# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- NAD_synthase PF02540.17 EME67444.1 - 0.05 12.7 0.0 0.05 12.7 0.0 1.1 1 0 0 1 1 1 0 NAD synthase tRNA_Me_trans PF03054.16 EME67444.1 - 0.15 10.8 0.0 0.16 10.7 0.0 1.1 1 0 0 1 1 1 0 tRNA methyl transferase NAD_synthase PF02540.17 EME67445.1 - 0.05 12.7 0.0 0.05 12.7 0.0 1.1 1 0 0 1 1 1 0 NAD synthase tRNA_Me_trans PF03054.16 EME67445.1 - 0.15 10.8 0.0 0.16 10.7 0.0 1.1 1 0 0 1 1 1 0 tRNA methyl transferase Cadherin_5 PF17892.1 EME67446.1 - 7.6e-19 67.5 2.5 3.2e-10 39.8 0.1 2.0 2 0 0 2 2 2 2 Cadherin-like domain Cadherin_4 PF17803.1 EME67446.1 - 6e-08 33.2 1.0 6e-08 33.2 1.0 1.7 1 1 1 2 2 2 1 Bacterial cadherin-like domain Big_9 PF17963.1 EME67446.1 - 2e-07 31.6 3.4 0.00011 22.9 0.5 2.1 2 0 0 2 2 2 2 Bacterial Ig domain nec1 PF10379.9 EME67446.1 - 0.068 12.7 0.2 0.078 12.5 0.2 1.0 1 0 0 1 1 1 0 Virulence protein nec1 Epiglycanin_TR PF05647.11 EME67447.1 - 0.00041 20.2 20.1 0.0082 16.0 12.1 2.1 1 1 1 2 2 2 2 Tandem-repeating region of mucin, epiglycanin-like Rrp40_N PF18311.1 EME67447.1 - 1.9 8.5 9.8 11 6.1 1.4 3.1 1 1 2 3 3 3 0 Exosome complex exonuclease Rrp40 N-terminal domain ETF PF01012.21 EME67448.1 - 4e-19 69.2 1.6 4.3e-19 69.1 1.6 1.0 1 0 0 1 1 1 1 Electron transfer flavoprotein domain Bac_DNA_binding PF00216.21 EME67449.1 - 2.6e-20 72.4 0.1 2.7e-20 72.4 0.1 1.0 1 0 0 1 1 1 1 Bacterial DNA-binding protein HU-HIG PF18291.1 EME67449.1 - 0.0062 16.6 0.0 0.0066 16.5 0.0 1.0 1 0 0 1 1 1 1 HU domain fused to wHTH, Ig, or Glycine-rich motif HTH_26 PF13443.6 EME67451.1 - 0.011 16.2 1.5 0.33 11.4 0.2 2.6 1 1 1 2 2 2 0 Cro/C1-type HTH DNA-binding domain Mesothelin PF06060.12 EME67451.1 - 0.029 12.6 0.3 0.028 12.6 0.3 1.1 1 0 0 1 1 1 0 Pre-pro-megakaryocyte potentiating factor precursor (Mesothelin) Epiglycanin_TR PF05647.11 EME67451.1 - 2.4 8.1 30.2 2.7 8.0 17.9 2.1 1 1 1 2 2 2 0 Tandem-repeating region of mucin, epiglycanin-like ETF PF01012.21 EME67455.1 - 1.6e-24 86.8 1.6 1.7e-24 86.7 1.6 1.0 1 0 0 1 1 1 1 Electron transfer flavoprotein domain ETF PF01012.21 EME67457.1 - 2.9e-25 89.2 0.1 3.3e-25 89.0 0.1 1.0 1 0 0 1 1 1 1 Electron transfer flavoprotein domain UDPG_MGDP_dh PF00984.19 EME67458.1 - 1.3e-11 44.5 0.1 2e-11 44.0 0.1 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain CDC24_OB1 PF17246.2 EME67458.1 - 0.046 13.8 0.0 0.06 13.5 0.0 1.2 1 0 0 1 1 1 0 Cell division control protein 24, OB domain 1 HATPase_c PF02518.26 EME67459.1 - 2.2e-20 73.2 0.0 2.3e-20 73.1 0.0 1.0 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 EME67459.1 - 0.014 15.2 0.0 0.016 15.0 0.0 1.1 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.6 EME67459.1 - 0.082 12.8 0.0 0.11 12.4 0.0 1.3 1 1 0 1 1 1 0 GHKL domain Transposase_mut PF00872.18 EME67460.1 - 0.004 16.1 0.2 0.004 16.1 0.2 1.0 1 0 0 1 1 1 1 Transposase, Mutator family IMS PF00817.20 EME67461.1 - 2.7e-10 40.4 0.0 4.5e-10 39.7 0.0 1.4 1 0 0 1 1 1 1 impB/mucB/samB family IMS_HHH PF11798.8 EME67461.1 - 0.0042 17.3 0.0 0.01 16.1 0.0 1.7 1 0 0 1 1 1 1 IMS family HHH motif DNA_pol_lambd_f PF10391.9 EME67461.1 - 0.035 13.9 0.4 0.068 13.0 0.4 1.5 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda BAF PF02961.14 EME67461.1 - 0.042 14.3 0.0 0.085 13.3 0.0 1.5 1 0 0 1 1 1 0 Barrier to autointegration factor ETF_alpha PF00766.19 EME67462.1 - 1.5e-37 127.4 0.4 2e-37 127.1 0.4 1.2 1 0 0 1 1 1 1 Electron transfer flavoprotein FAD-binding domain HTH_28 PF13518.6 EME67463.1 - 1.5e-05 25.0 0.4 2.7e-05 24.2 0.4 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 EME67463.1 - 5.8e-05 22.8 0.7 0.00015 21.4 0.1 2.0 3 0 0 3 3 3 1 Homeodomain-like domain HTH_Tnp_Tc3_2 PF01498.18 EME67463.1 - 6.4e-05 23.1 0.0 0.00011 22.4 0.0 1.4 1 0 0 1 1 1 1 Transposase HTH_Tnp_IS630 PF01710.16 EME67463.1 - 0.00015 21.8 0.0 0.0002 21.4 0.0 1.2 1 0 0 1 1 1 1 Transposase HTH_29 PF13551.6 EME67463.1 - 0.0043 17.0 0.2 0.008 16.2 0.2 1.4 1 0 0 1 1 1 1 Winged helix-turn helix HTH_32 PF13565.6 EME67463.1 - 0.011 16.3 0.1 0.027 15.1 0.1 1.6 2 0 0 2 2 2 0 Homeodomain-like domain DUF5466 PF17554.2 EME67463.1 - 0.029 14.6 0.7 0.05 13.8 0.7 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5466) HTH_33 PF13592.6 EME67463.1 - 0.044 13.4 0.1 0.11 12.2 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn helix HTH_7 PF02796.15 EME67463.1 - 0.072 13.2 0.4 0.29 11.2 0.0 2.1 2 1 0 2 2 2 0 Helix-turn-helix domain of resolvase Slx4 PF09494.10 EME67463.1 - 0.23 11.4 0.0 0.35 10.8 0.0 1.3 1 0 0 1 1 1 0 Slx4 endonuclease Bac_DNA_binding PF00216.21 EME67464.1 - 2.7e-20 72.3 0.1 2.9e-20 72.3 0.1 1.0 1 0 0 1 1 1 1 Bacterial DNA-binding protein HU-HIG PF18291.1 EME67464.1 - 0.0049 17.0 0.0 0.0052 16.9 0.0 1.0 1 0 0 1 1 1 1 HU domain fused to wHTH, Ig, or Glycine-rich motif ROS_MUCR PF05443.11 EME67465.1 - 4e-27 94.7 0.0 4.4e-27 94.6 0.0 1.0 1 0 0 1 1 1 1 ROS/MUCR transcriptional regulator protein DUF4351 PF14261.6 EME67468.1 - 8.3e-05 22.6 2.9 4.2 7.5 0.2 4.7 1 1 1 2 2 2 2 Domain of unknown function (DUF4351) Phage_TAC_7 PF10109.9 EME67468.1 - 0.00019 21.4 0.4 8 6.7 0.0 3.8 1 1 2 4 4 4 2 Phage tail assembly chaperone proteins, E, or 41 or 14 HTH_26 PF13443.6 EME67468.1 - 0.0004 20.8 8.6 1.8 9.1 0.1 4.3 1 1 3 4 4 4 3 Cro/C1-type HTH DNA-binding domain Arc_PepC PF06819.11 EME67468.1 - 0.008 16.3 0.2 0.96 9.6 0.0 2.7 1 1 2 3 3 3 2 Archaeal Peptidase A24 C-terminal Domain DUF3275 PF11679.8 EME67468.1 - 0.12 12.4 2.9 2.6 8.0 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3275) Resolvase PF00239.21 EME67469.1 - 1.2e-21 77.3 0.5 2e-21 76.7 0.1 1.5 2 0 0 2 2 2 1 Resolvase, N terminal domain HTH_7 PF02796.15 EME67469.1 - 3.2e-08 33.5 0.2 6.7e-08 32.5 0.1 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain of resolvase HTH_38 PF13936.6 EME67469.1 - 9.5e-06 25.3 0.1 3.1e-05 23.7 0.1 1.9 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 EME67469.1 - 6.1e-05 22.3 0.4 0.00016 21.1 0.4 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 Sigma70_r4 PF04545.16 EME67469.1 - 7.4e-05 22.2 0.2 0.0011 18.4 0.2 2.3 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_23 PF13384.6 EME67469.1 - 0.0044 16.8 0.2 0.011 15.6 0.2 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.6 EME67469.1 - 0.0064 16.5 0.6 0.028 14.5 0.1 2.1 1 1 1 2 2 2 1 Winged helix-turn helix HTH_20 PF12840.7 EME67469.1 - 0.0069 16.4 0.0 0.015 15.3 0.0 1.7 1 1 0 1 1 1 1 Helix-turn-helix domain Sigma70_ECF PF07638.11 EME67469.1 - 0.0084 16.0 0.1 0.014 15.3 0.1 1.4 1 1 0 1 1 1 1 ECF sigma factor CENP-B_N PF04218.13 EME67469.1 - 0.019 14.6 0.1 0.042 13.5 0.1 1.5 1 0 0 1 1 1 0 CENP-B N-terminal DNA-binding domain Sigma70_r4_2 PF08281.12 EME67469.1 - 0.03 14.0 0.0 0.063 13.0 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_28 PF13518.6 EME67469.1 - 0.12 12.5 0.1 0.23 11.6 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_3 PF01381.22 EME67470.1 - 1.7e-07 31.2 0.0 2e-07 31.0 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 EME67470.1 - 0.00041 20.6 0.0 0.00052 20.3 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 EME67470.1 - 0.011 16.1 0.0 0.012 16.0 0.0 1.1 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_19 PF12844.7 EME67470.1 - 0.056 13.5 0.0 0.066 13.2 0.0 1.1 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_26 PF13443.6 EME67471.1 - 0.00091 19.6 7.3 0.086 13.3 0.3 3.6 2 2 2 4 4 4 2 Cro/C1-type HTH DNA-binding domain DUF3275 PF11679.8 EME67471.1 - 0.41 10.6 3.7 4.2 7.3 0.5 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3275) Epiglycanin_TR PF05647.11 EME67471.1 - 4.2 7.4 63.6 2.7 8.0 19.6 4.0 1 1 3 4 4 4 0 Tandem-repeating region of mucin, epiglycanin-like GAF_2 PF13185.6 EME67472.1 - 1.3e-18 67.6 0.2 1.6e-18 67.3 0.2 1.1 1 0 0 1 1 1 1 GAF domain GAF PF01590.26 EME67472.1 - 6.3e-09 36.6 0.1 8.4e-09 36.2 0.1 1.2 1 0 0 1 1 1 1 GAF domain bHLH-MYC_N PF14215.6 EME67472.1 - 0.017 15.5 0.0 0.031 14.5 0.0 1.4 1 1 0 1 1 1 0 bHLH-MYC and R2R3-MYB transcription factors N-terminal HTH_31 PF13560.6 EME67473.1 - 3.8e-07 30.3 1.1 4.4e-07 30.1 1.1 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 EME67473.1 - 0.0003 20.8 0.0 0.0004 20.4 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 EME67473.1 - 0.014 15.4 0.0 0.018 15.0 0.0 1.1 1 0 0 1 1 1 0 Helix-turn-helix domain DUF4788 PF16032.5 EME67473.1 - 0.17 10.8 0.0 0.18 10.7 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4788) GTP_EFTU_D3 PF03143.17 EME67475.1 - 1e-33 116.0 0.0 2e-33 115.0 0.0 1.5 1 0 0 1 1 1 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.25 EME67475.1 - 2.4e-17 63.1 7.6 7.6e-17 61.5 6.2 2.0 2 0 0 2 2 2 1 Elongation factor Tu domain 2 Lsm_C PF14894.6 EME67475.1 - 0.081 12.7 4.2 0.18 11.6 4.2 1.5 1 0 0 1 1 1 0 Lsm C-terminal 23S_rRNA_IVP PF05635.11 EME67476.1 - 0.0011 19.2 0.0 0.0014 18.9 0.0 1.1 1 0 0 1 1 1 1 23S rRNA-intervening sequence protein Terminase_GpA PF05876.12 EME67477.1 - 2.7e-11 42.7 0.2 2.9e-11 42.6 0.2 1.0 1 0 0 1 1 1 1 Phage terminase large subunit (GpA) ETF PF01012.21 EME67478.1 - 2.1e-31 109.2 13.9 2.4e-31 109.1 13.9 1.0 1 0 0 1 1 1 1 Electron transfer flavoprotein domain Epiglycanin_TR PF05647.11 EME67479.1 - 0.046 13.6 82.2 2.5 8.1 19.5 4.7 1 1 3 4 4 4 0 Tandem-repeating region of mucin, epiglycanin-like HTH_26 PF13443.6 EME67479.1 - 0.075 13.5 8.1 4.6 7.7 0.1 4.4 1 1 2 3 3 3 0 Cro/C1-type HTH DNA-binding domain PemK_toxin PF02452.17 EME67479.1 - 1.9 8.9 4.9 2 8.9 0.6 2.3 1 1 1 2 2 2 0 PemK-like, MazF-like toxin of type II toxin-antitoxin system CaMKII_AD PF08332.10 EME67479.1 - 2 8.6 5.6 17 5.5 0.1 3.6 1 1 5 6 6 6 0 Calcium/calmodulin dependent protein kinase II association domain DUF3275 PF11679.8 EME67479.1 - 4.4 7.2 7.8 6.9 6.6 1.5 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3275) HTH_26 PF13443.6 EME67480.1 - 0.011 16.2 13.2 4.9 7.7 0.4 5.1 1 1 3 4 4 4 0 Cro/C1-type HTH DNA-binding domain Epiglycanin_TR PF05647.11 EME67480.1 - 0.27 11.2 86.7 0.099 12.6 25.2 4.4 1 1 2 4 4 4 0 Tandem-repeating region of mucin, epiglycanin-like DUF3275 PF11679.8 EME67480.1 - 0.67 9.9 6.1 0.66 9.9 0.8 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3275) DUF4096 PF13340.6 EME67481.1 - 4.7e-23 81.2 0.6 6.4e-23 80.8 0.6 1.2 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) DDE_3 PF13358.6 EME67483.1 - 2.2e-34 118.3 0.0 2.7e-34 118.0 0.0 1.1 1 0 0 1 1 1 1 DDE superfamily endonuclease MethyltransfD12 PF02086.15 EME67484.1 - 1.5e-12 47.8 0.0 2.1e-12 47.3 0.0 1.2 1 0 0 1 1 1 1 D12 class N6 adenine-specific DNA methyltransferase LINES_C PF14695.6 EME67485.1 - 0.15 11.5 0.3 0.26 10.8 0.3 1.4 1 0 0 1 1 1 0 Lines C-terminus Prim-Pol PF09250.11 EME67486.1 - 7.3e-09 36.2 0.1 8.6e-09 36.0 0.1 1.1 1 0 0 1 1 1 1 Bifunctional DNA primase/polymerase, N-terminal GGDEF PF00990.21 EME67487.1 - 4.7e-30 104.5 0.1 1.5e-29 102.9 0.0 1.7 2 0 0 2 2 2 1 Diguanylate cyclase, GGDEF domain HemolysinCabind PF00353.19 EME67488.1 - 4.9e-31 106.3 107.9 7.2e-08 32.3 16.9 6.3 3 3 3 6 6 6 6 RTX calcium-binding nonapeptide repeat (4 copies) DNA_methylase PF00145.17 EME67490.1 - 2.6e-35 122.3 0.0 4e-23 82.3 0.0 2.0 2 0 0 2 2 2 2 C-5 cytosine-specific DNA methylase TrkA_N PF02254.18 EME67491.1 - 6.5e-27 94.1 0.4 8.9e-27 93.7 0.4 1.2 1 0 0 1 1 1 1 TrkA-N domain Na_H_Exchanger PF00999.21 EME67491.1 - 3.1e-06 26.2 0.4 5.5e-06 25.4 0.4 1.3 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family ApbA PF02558.16 EME67491.1 - 0.00059 19.5 0.2 0.0009 18.9 0.2 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_10 PF13460.6 EME67491.1 - 0.0016 18.3 0.8 0.0024 17.8 0.8 1.3 1 0 0 1 1 1 1 NAD(P)H-binding NAD_binding_7 PF13241.6 EME67491.1 - 0.032 14.7 0.2 0.082 13.4 0.2 1.6 1 1 0 1 1 1 0 Putative NAD(P)-binding NmrA PF05368.13 EME67491.1 - 0.038 13.5 0.8 0.19 11.3 0.7 1.8 1 1 1 2 2 2 0 NmrA-like family GerE PF00196.19 EME67492.1 - 5.5e-05 22.6 0.0 5.6e-05 22.6 0.0 1.0 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_23 PF13384.6 EME67492.1 - 0.0013 18.5 0.0 0.0013 18.5 0.0 1.0 1 0 0 1 1 1 1 Homeodomain-like domain HTH_7 PF02796.15 EME67492.1 - 0.0024 17.9 0.0 0.0026 17.8 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_28 PF13518.6 EME67492.1 - 0.026 14.6 0.0 0.026 14.6 0.0 1.0 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 EME67492.1 - 0.034 13.8 0.0 0.034 13.8 0.0 1.0 1 0 0 1 1 1 0 Sigma-70, region 4 PAS_3 PF08447.12 EME67493.1 - 5.4e-15 55.5 0.1 9.6e-15 54.7 0.1 1.4 1 0 0 1 1 1 1 PAS fold HisKA PF00512.25 EME67493.1 - 1.7e-10 40.8 0.0 3.7e-10 39.7 0.0 1.6 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS PF00989.25 EME67493.1 - 2.3e-06 27.6 0.0 1.6e-05 24.8 0.0 2.0 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.7 EME67493.1 - 5.3e-05 23.4 0.0 0.00012 22.2 0.0 1.6 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.10 EME67493.1 - 0.00026 21.2 0.0 0.0006 20.0 0.0 1.6 1 0 0 1 1 1 1 PAS fold 2-oxoacid_dh PF00198.23 EME67494.1 - 1.6e-82 276.4 0.0 1.9e-82 276.2 0.0 1.0 1 0 0 1 1 1 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) E3_binding PF02817.17 EME67494.1 - 2.4e-11 43.8 2.3 5.5e-11 42.6 2.3 1.7 1 0 0 1 1 1 1 e3 binding domain Phage_sheath_1N PF17481.2 EME67495.1 - 0.0014 19.1 5.7 0.036 14.5 5.7 2.6 1 1 0 1 1 1 1 Phage tail sheath protein beta-sandwich domain P22_AR_N PF10547.9 EME67496.1 - 3.4e-25 88.6 0.0 4.5e-25 88.2 0.0 1.2 1 0 0 1 1 1 1 P22_AR N-terminal domain dCache_1 PF02743.18 EME67497.1 - 7.1e-13 48.9 0.0 9.2e-13 48.5 0.0 1.1 1 0 0 1 1 1 1 Cache domain MCPsignal PF00015.21 EME67499.1 - 5e-32 111.1 37.9 7.6e-31 107.2 27.0 3.1 1 1 2 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF948 PF06103.11 EME67499.1 - 0.00014 22.1 14.1 0.088 13.1 0.6 4.0 1 1 3 4 4 4 3 Bacterial protein of unknown function (DUF948) DUF1664 PF07889.12 EME67499.1 - 0.0012 18.9 6.0 1.5 8.8 1.0 3.5 2 1 2 4 4 4 2 Protein of unknown function (DUF1664) FlaC_arch PF05377.11 EME67499.1 - 0.013 15.8 0.9 1.7 9.1 0.0 3.1 3 1 0 3 3 3 0 Flagella accessory protein C (FlaC) COG5 PF10392.9 EME67499.1 - 0.045 13.9 1.5 0.62 10.2 0.1 2.8 2 1 0 3 3 3 0 Golgi transport complex subunit 5 KASH_CCD PF14662.6 EME67499.1 - 0.047 13.5 0.7 1.4 8.7 0.0 2.7 1 1 1 3 3 3 0 Coiled-coil region of CCDC155 or KASH Laminin_I PF06008.14 EME67499.1 - 0.076 12.7 18.8 0.32 10.7 1.8 3.1 1 1 3 4 4 4 0 Laminin Domain I Syntaxin PF00804.25 EME67499.1 - 0.086 12.5 7.8 1.9 8.1 0.4 2.9 1 1 0 2 2 2 0 Syntaxin DUF1421 PF07223.11 EME67499.1 - 0.13 12.1 0.0 0.3 10.9 0.0 1.6 1 0 0 1 1 1 0 UBA-like domain (DUF1421) Seryl_tRNA_N PF02403.22 EME67499.1 - 0.15 12.3 6.5 5.9 7.2 0.3 3.1 1 1 3 4 4 4 0 Seryl-tRNA synthetase N-terminal domain ArsR PF09824.9 EME67499.1 - 0.2 11.3 0.3 5.3 6.6 0.0 2.5 2 1 1 3 3 3 0 ArsR transcriptional regulator Laminin_II PF06009.12 EME67499.1 - 0.34 10.9 17.0 1.5 8.8 0.6 3.3 1 1 2 3 3 3 0 Laminin Domain II DUF3450 PF11932.8 EME67499.1 - 0.45 9.8 18.1 0.024 13.9 4.9 2.8 1 1 1 3 3 3 0 Protein of unknown function (DUF3450) WXG100 PF06013.12 EME67499.1 - 0.73 10.1 19.7 2.7 8.3 0.3 4.6 1 1 2 4 4 4 0 Proteins of 100 residues with WXG GldM_N PF12081.8 EME67499.1 - 1.5 8.8 7.2 1.5 8.9 0.2 3.0 1 1 2 3 3 3 0 GldM N-terminal domain CENP-H PF05837.12 EME67499.1 - 2.3 8.7 7.2 2 8.9 1.1 2.7 2 1 1 3 3 3 0 Centromere protein H (CENP-H) PhageMin_Tail PF10145.9 EME67499.1 - 6.3 6.6 34.1 0.61 9.9 21.8 2.3 1 1 1 2 2 2 0 Phage-related minor tail protein DUF4351 PF14261.6 EME67500.1 - 0.00039 20.4 18.0 31 4.7 0.1 9.2 2 2 4 6 6 6 1 Domain of unknown function (DUF4351) Phage_TAC_7 PF10109.9 EME67500.1 - 0.00063 19.8 6.9 24 5.1 0.1 6.5 3 3 4 7 7 7 1 Phage tail assembly chaperone proteins, E, or 41 or 14 HTH_26 PF13443.6 EME67500.1 - 0.0033 17.8 27.1 7.7 7.0 0.3 8.3 2 2 6 9 9 9 3 Cro/C1-type HTH DNA-binding domain Epiglycanin_TR PF05647.11 EME67500.1 - 2.8 7.9 135.1 0.88 9.5 23.2 7.9 1 1 7 8 8 8 0 Tandem-repeating region of mucin, epiglycanin-like DUF3275 PF11679.8 EME67500.1 - 9.9 6.1 12.6 13 5.7 1.5 3.6 1 1 2 4 4 4 0 Protein of unknown function (DUF3275) Mob_synth_C PF06463.13 EME67501.1 - 1.5e-41 141.4 0.0 2.2e-41 140.8 0.0 1.3 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Radical_SAM PF04055.21 EME67501.1 - 1.3e-26 94.0 0.0 2e-26 93.4 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 EME67501.1 - 8.8e-07 29.3 0.0 1.6e-06 28.5 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 EME67501.1 - 5e-05 23.4 0.0 0.00013 22.1 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Resolvase PF00239.21 EME67502.1 - 5e-27 94.8 0.2 6.7e-27 94.4 0.2 1.2 1 0 0 1 1 1 1 Resolvase, N terminal domain Recombinase PF07508.13 EME67502.1 - 1.4e-05 25.4 0.0 3.6e-05 24.1 0.0 1.7 1 0 0 1 1 1 1 Recombinase HTH_23 PF13384.6 EME67502.1 - 0.083 12.7 0.3 39 4.2 0.0 3.2 3 0 0 3 3 3 0 Homeodomain-like domain dTDP_sugar_isom PF00908.17 EME67502.1 - 0.097 12.3 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 dTDP-4-dehydrorhamnose 3,5-epimerase DUF3368 PF11848.8 EME67502.1 - 0.14 11.9 0.0 0.27 11.1 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3368) DUF4351 PF14261.6 EME67504.1 - 5e-05 23.3 18.5 9.8 6.3 0.2 9.9 3 3 6 9 9 9 2 Domain of unknown function (DUF4351) HTH_26 PF13443.6 EME67504.1 - 0.0001 22.7 28.7 0.82 10.2 0.4 8.6 3 2 4 7 7 7 3 Cro/C1-type HTH DNA-binding domain Prok_Ub PF14454.6 EME67504.1 - 0.0038 16.9 1.5 5 6.9 0.1 3.9 3 1 0 3 3 3 2 Prokaryotic Ubiquitin DUF3275 PF11679.8 EME67504.1 - 0.39 10.7 18.8 4.1 7.3 0.5 4.0 1 1 3 4 4 4 0 Protein of unknown function (DUF3275) FAM72 PF14976.6 EME67504.1 - 1.8 8.7 7.3 13 5.9 0.3 3.6 2 1 2 4 4 4 0 FAM72 protein DDE_Tnp_IS1595 PF12762.7 EME67505.1 - 7.1e-38 130.0 0.1 9.6e-38 129.6 0.1 1.1 1 0 0 1 1 1 1 ISXO2-like transposase domain Zn_Tnp_IS1595 PF12760.7 EME67505.1 - 8.4e-14 51.3 2.7 1.6e-13 50.4 2.7 1.5 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Elf1 PF05129.13 EME67505.1 - 0.2 11.7 0.1 0.39 10.8 0.1 1.4 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like HTH_26 PF13443.6 EME67506.1 - 0.0048 17.3 26.3 1 9.8 0.3 8.2 3 3 3 6 6 6 5 Cro/C1-type HTH DNA-binding domain Sigma70_r4_2 PF08281.12 EME67506.1 - 0.017 14.8 0.2 5 6.9 0.0 4.5 3 1 2 5 5 5 0 Sigma-70, region 4 2-oxoacid_dh PF00198.23 EME67507.1 - 5.5e-66 222.4 0.0 7e-66 222.0 0.0 1.1 1 0 0 1 1 1 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Biotin_lipoyl PF00364.22 EME67507.1 - 7.3e-20 70.6 0.3 1.3e-19 69.8 0.3 1.4 1 0 0 1 1 1 1 Biotin-requiring enzyme E3_binding PF02817.17 EME67507.1 - 9.3e-17 61.1 0.6 3.8e-16 59.1 0.6 2.2 1 0 0 1 1 1 1 e3 binding domain Biotin_lipoyl_2 PF13533.6 EME67507.1 - 0.00027 20.7 0.0 0.00078 19.2 0.0 1.8 1 0 0 1 1 1 1 Biotin-lipoyl like TPR_16 PF13432.6 EME67508.1 - 6e-15 55.6 16.2 1.5e-07 31.9 1.2 3.3 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_2 PF07719.17 EME67508.1 - 1.7e-14 52.6 4.0 0.0012 18.8 0.1 4.5 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_19 PF14559.6 EME67508.1 - 2.5e-13 50.3 5.5 4.6e-08 33.5 1.9 3.1 2 1 1 3 3 2 2 Tetratricopeptide repeat TPR_1 PF00515.28 EME67508.1 - 2.6e-10 39.7 0.1 0.0059 16.4 0.0 4.0 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_14 PF13428.6 EME67508.1 - 4.8e-10 39.4 23.2 0.00094 19.8 3.4 5.5 3 2 2 5 5 5 3 Tetratricopeptide repeat TPR_17 PF13431.6 EME67508.1 - 5.7e-08 32.6 0.0 1.4 9.5 0.0 4.4 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_11 PF13414.6 EME67508.1 - 2.7e-07 30.1 0.0 0.0056 16.3 0.0 3.4 2 1 1 3 3 3 1 TPR repeat TPR_8 PF13181.6 EME67508.1 - 9.7e-07 28.5 0.0 0.22 11.8 0.0 3.9 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_12 PF13424.6 EME67508.1 - 2.8e-06 27.5 7.2 0.00089 19.5 2.0 3.4 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_7 PF13176.6 EME67508.1 - 6.3e-06 25.8 1.6 0.04 13.9 0.3 3.7 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_9 PF13371.6 EME67508.1 - 8.8e-06 25.8 17.7 9.2e-05 22.5 1.7 3.5 2 1 2 4 4 4 3 Tetratricopeptide repeat Glyco_transf_9 PF01075.17 EME67508.1 - 8.2e-05 22.0 0.4 0.00014 21.3 0.4 1.2 1 0 0 1 1 1 1 Glycosyltransferase family 9 (heptosyltransferase) TPR_4 PF07721.14 EME67508.1 - 0.00023 21.5 5.7 0.003 18.0 0.5 7.0 7 0 0 7 7 5 2 Tetratricopeptide repeat TPR_15 PF13429.6 EME67508.1 - 0.0015 17.8 1.3 0.0097 15.2 0.8 1.9 1 1 0 1 1 1 1 Tetratricopeptide repeat ANAPC3 PF12895.7 EME67508.1 - 0.081 13.2 0.0 0.18 12.0 0.0 1.6 1 1 0 1 1 1 0 Anaphase-promoting complex, cyclosome, subunit 3 BTAD PF03704.17 EME67508.1 - 0.1 13.0 0.4 0.1 13.0 0.4 2.6 1 1 1 2 2 2 0 Bacterial transcriptional activator domain TPR_10 PF13374.6 EME67508.1 - 0.58 10.1 17.9 0.78 9.7 0.2 4.3 5 0 0 5 5 5 0 Tetratricopeptide repeat Phage_int_SAM_3 PF14659.6 EME67509.1 - 2.7e-06 27.6 0.2 4.7e-06 26.8 0.2 1.4 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Pep3_Vps18 PF05131.14 EME67509.1 - 0.15 11.9 0.1 0.27 11.1 0.1 1.4 1 0 0 1 1 1 0 Pep3/Vps18/deep orange family zf-dskA_traR PF01258.17 EME67510.1 - 4e-09 36.3 3.5 5.8e-09 35.7 3.5 1.3 1 0 0 1 1 1 1 Prokaryotic dksA/traR C4-type zinc finger HypA PF01155.19 EME67510.1 - 0.024 14.6 0.7 0.03 14.4 0.7 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA GED PF02212.18 EME67511.1 - 0.1 12.8 0.0 0.1 12.8 0.0 1.1 1 0 0 1 1 1 0 Dynamin GTPase effector domain NAD_binding_1 PF00175.21 EME67512.1 - 9.8e-15 55.1 0.0 1.6e-14 54.4 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain Fer4 PF00037.27 EME67512.1 - 6e-14 51.2 15.7 1.4e-07 31.0 3.8 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 EME67512.1 - 5.2e-10 39.3 12.1 8.4e-10 38.6 12.1 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 EME67512.1 - 4.3e-09 37.2 6.0 0.0012 19.7 0.2 2.5 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 EME67512.1 - 3.6e-08 33.4 12.8 6.5e-08 32.6 12.8 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 EME67512.1 - 8e-08 32.8 15.0 1.8e-07 31.6 15.0 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 EME67512.1 - 2.1e-07 30.7 16.0 0.00017 21.5 3.4 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 EME67512.1 - 4.4e-07 29.9 14.0 1.1e-06 28.6 14.1 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain FAD_binding_6 PF00970.24 EME67512.1 - 8.4e-07 29.3 0.0 1.5e-06 28.5 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain Fer4_2 PF12797.7 EME67512.1 - 8.7e-06 25.5 15.9 0.0016 18.4 4.3 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 EME67512.1 - 0.00045 20.5 16.1 0.025 15.1 4.7 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 EME67512.1 - 0.0012 19.6 18.3 0.17 12.9 3.4 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 EME67512.1 - 0.017 15.5 15.4 7.1 7.2 15.4 2.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 EME67512.1 - 0.033 14.7 13.9 0.53 10.9 2.9 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_11 PF13247.6 EME67512.1 - 0.12 12.5 7.5 0.22 11.7 7.5 1.4 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 EME67512.1 - 0.83 10.2 14.4 4.4 7.9 2.6 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I HATPase_c PF02518.26 EME67513.1 - 1.2e-15 57.9 0.0 2.2e-15 57.1 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Hpt PF01627.23 EME67513.1 - 0.00024 21.3 0.1 0.00085 19.5 0.1 2.0 1 0 0 1 1 1 1 Hpt domain HATPase_c_2 PF13581.6 EME67513.1 - 0.0025 17.8 0.3 0.0072 16.3 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain TetR_C_32 PF09209.11 EME67513.1 - 0.054 13.5 0.1 4.3 7.3 0.1 3.0 4 0 0 4 4 4 0 Tetracyclin repressor-like, C-terminal domain HATPase_c_3 PF13589.6 EME67513.1 - 0.14 12.0 0.0 0.27 11.1 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDE_5 PF13546.6 EME67514.1 - 8.4e-49 166.3 2.0 1.2e-48 165.8 2.0 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1 PF01609.21 EME67514.1 - 4.8e-06 26.4 0.0 2e-05 24.4 0.0 1.9 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_4 PF13701.6 EME67514.1 - 0.022 13.0 0.0 0.18 10.0 0.0 1.9 2 0 0 2 2 2 0 Transposase DDE domain group 1 DUF523 PF04463.12 EME67514.1 - 0.083 12.9 0.0 0.14 12.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF523) Phage_integrase PF00589.22 EME67515.1 - 3.5e-10 39.9 0.0 6.8e-10 39.0 0.0 1.4 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_5 PF13102.6 EME67515.1 - 0.00015 22.1 0.0 0.00044 20.5 0.0 1.8 1 0 0 1 1 1 1 Phage integrase SAM-like domain Phage_int_SAM_1 PF02899.17 EME67515.1 - 0.16 12.3 0.0 6.3 7.2 0.0 2.8 3 0 0 3 3 3 0 Phage integrase, N-terminal SAM-like domain DDE_Tnp_ISL3 PF01610.17 EME67516.1 - 2.4e-60 204.2 0.5 3.3e-60 203.8 0.5 1.2 1 0 0 1 1 1 1 Transposase HTH_Tnp_ISL3 PF13542.6 EME67516.1 - 1.2e-14 53.5 0.2 6.6e-14 51.1 0.2 2.4 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 EME67516.1 - 1.4e-07 32.0 3.7 3.3e-07 30.9 3.7 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF1610 PF07754.11 EME67516.1 - 0.026 14.5 0.0 0.063 13.3 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF1610) DUF723 PF05265.13 EME67516.1 - 0.24 11.4 1.5 7 6.7 0.0 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF723) Zn_ribbon_recom PF13408.6 EME67517.1 - 1.5e-11 44.6 1.1 2.7e-11 43.8 1.1 1.4 1 0 0 1 1 1 1 Recombinase zinc beta ribbon domain Recombinase PF07508.13 EME67517.1 - 2.8e-10 40.5 0.2 4.4e-10 39.9 0.2 1.3 1 0 0 1 1 1 1 Recombinase Baculo_PEP_C PF04513.12 EME67517.1 - 0.055 13.5 0.0 3.7 7.6 0.0 2.2 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF4164 PF13747.6 EME67517.1 - 1.8 8.9 7.0 1.6 9.1 2.2 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4164) Arm-DNA-bind_3 PF13356.6 EME67518.1 - 1e-17 64.3 0.1 1.3e-17 63.9 0.1 1.2 1 0 0 1 1 1 1 Arm DNA-binding domain HTH_19 PF12844.7 EME67519.1 - 4.7e-07 29.7 0.1 7.5e-07 29.1 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 EME67519.1 - 3.1e-06 27.1 0.2 5.7e-06 26.3 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 EME67519.1 - 5.9e-05 23.3 0.3 0.00012 22.3 0.3 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 EME67519.1 - 0.00019 21.2 0.4 0.0018 18.1 0.4 2.1 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 EME67519.1 - 0.0018 18.7 0.0 0.0029 18.0 0.0 1.4 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain Bac_luciferase PF00296.20 EME67519.1 - 0.039 13.4 0.6 0.045 13.2 0.6 1.1 1 0 0 1 1 1 0 Luciferase-like monooxygenase EF-G-binding_N PF07299.11 EME67520.1 - 0.16 12.5 0.1 0.29 11.7 0.1 1.4 1 0 0 1 1 1 0 Elongation factor G-binding protein, N-terminal ATP-cone PF03477.16 EME67521.1 - 6.6e-18 65.1 0.1 8.6e-18 64.7 0.1 1.2 1 0 0 1 1 1 1 ATP cone domain TF_Zn_Ribbon PF08271.12 EME67521.1 - 0.0067 15.9 1.3 0.25 10.9 0.3 2.4 2 0 0 2 2 2 1 TFIIB zinc-binding Lar_restr_allev PF14354.6 EME67521.1 - 0.02 15.3 1.1 0.053 13.9 1.1 1.7 1 1 0 1 1 1 0 Restriction alleviation protein Lar zf-ISL3 PF14690.6 EME67521.1 - 0.022 15.4 2.0 5.8 7.7 0.1 2.6 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-ribbon_3 PF13248.6 EME67521.1 - 0.025 14.0 0.5 2.8 7.5 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain PBC PF03792.13 EME67521.1 - 0.069 12.9 0.1 0.1 12.4 0.1 1.2 1 0 0 1 1 1 0 PBC domain UXS1_N PF11803.8 EME67521.1 - 0.12 12.7 0.0 0.2 12.1 0.0 1.3 1 0 0 1 1 1 0 UDP-glucuronate decarboxylase N-terminal zf-Di19 PF05605.12 EME67521.1 - 0.16 12.3 2.2 0.82 10.0 2.2 2.0 1 1 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding Nudix_N_2 PF14803.6 EME67521.1 - 0.45 10.5 4.0 1.3 9.1 4.0 1.7 1 0 0 1 1 1 0 Nudix N-terminal UPF0547 PF10571.9 EME67521.1 - 0.57 10.3 4.0 0.71 10.0 0.2 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Zn_Tnp_IS1595 PF12760.7 EME67521.1 - 0.64 10.0 5.9 8.2 6.5 0.8 2.3 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zinc_ribbon_9 PF14369.6 EME67521.1 - 0.91 9.8 3.0 2.2 8.6 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon Zn-ribbon_8 PF09723.10 EME67521.1 - 2.3 8.4 4.3 7.7 6.7 4.3 1.9 1 1 0 1 1 1 0 Zinc ribbon domain Rad50_zn_hook PF04423.14 EME67521.1 - 2.6 8.0 4.4 78 3.2 0.1 3.4 4 0 0 4 4 4 0 Rad50 zinc hook motif Response_reg PF00072.24 EME67522.1 - 2.1e-25 89.1 0.0 2.4e-25 88.9 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain SpoVG PF04026.12 EME67523.1 - 1.4e-05 25.2 0.0 2e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 SpoVG Hemerythrin PF01814.23 EME67525.1 - 4.7e-09 37.0 1.2 7.2e-09 36.4 1.2 1.3 1 0 0 1 1 1 1 Hemerythrin HHE cation binding domain GGDEF PF00990.21 EME67525.1 - 2.6e-07 30.5 0.0 5.5e-06 26.2 0.0 2.1 2 0 0 2 2 2 1 Diguanylate cyclase, GGDEF domain CheB_methylest PF01339.17 EME67526.1 - 9.7e-53 178.4 0.1 1.1e-52 178.2 0.1 1.0 1 0 0 1 1 1 1 CheB methylesterase CheR PF01739.18 EME67527.1 - 7.1e-62 208.4 0.0 8.6e-62 208.1 0.0 1.1 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain CheR_N PF03705.15 EME67527.1 - 3.1e-09 36.4 0.0 5.4e-09 35.6 0.0 1.4 1 0 0 1 1 1 1 CheR methyltransferase, all-alpha domain Methyltransf_25 PF13649.6 EME67527.1 - 3.9e-08 33.9 0.0 9.1e-06 26.3 0.0 2.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 EME67527.1 - 4.5e-08 33.8 0.0 7.6e-07 29.8 0.0 2.2 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 EME67527.1 - 6.2e-07 30.0 0.1 2.1e-05 25.1 0.1 2.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 EME67527.1 - 2.3e-06 27.5 0.1 5.3e-05 23.1 0.1 2.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 EME67527.1 - 5.2e-05 23.2 0.0 8.5e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain NAS PF03059.16 EME67527.1 - 0.18 11.1 0.0 0.27 10.6 0.0 1.2 1 0 0 1 1 1 0 Nicotianamine synthase protein PEPCK_GTP PF00821.18 EME67527.1 - 0.18 10.6 0.0 0.24 10.2 0.0 1.2 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain Peptidase_A24 PF01478.18 EME67528.1 - 4.8e-09 36.6 12.3 7.3e-09 36.0 12.3 1.3 1 0 0 1 1 1 1 Type IV leader peptidase family RcpC PF16976.5 EME67529.1 - 1.1e-28 99.6 1.4 2.2e-28 98.6 1.4 1.5 1 0 0 1 1 1 1 Flp pilus assembly protein RcpC/CpaB SAF PF08666.12 EME67529.1 - 1.6e-06 28.7 1.1 1.2e-05 25.9 0.1 2.7 3 0 0 3 3 3 1 SAF domain DUF2749 PF10907.8 EME67529.1 - 0.23 11.6 1.5 0.89 9.8 0.5 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2749) DUF1772 PF08592.11 EME67530.1 - 0.00013 22.3 0.2 0.00018 21.9 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1772) DUF3040 PF11239.8 EME67530.1 - 0.036 14.3 0.6 0.14 12.5 0.6 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF3040) Sigma70_r2 PF04542.14 EME67531.1 - 7.6e-07 28.8 0.1 2.1e-06 27.4 0.1 1.8 1 0 0 1 1 1 1 Sigma-70 region 2 Sigma70_ECF PF07638.11 EME67531.1 - 0.045 13.6 0.1 0.099 12.5 0.1 1.5 1 1 0 1 1 1 0 ECF sigma factor RPA_interact_N PF14766.6 EME67531.1 - 1.1 9.0 5.1 9.6 5.9 0.5 2.6 2 0 0 2 2 2 0 Replication protein A interacting N-terminal DSPc PF00782.20 EME67532.1 - 1.5e-06 28.1 0.0 2e-06 27.7 0.0 1.1 1 0 0 1 1 1 1 Dual specificity phosphatase, catalytic domain PhageMin_Tail PF10145.9 EME67534.1 - 0.014 15.3 0.1 0.019 14.8 0.1 1.1 1 0 0 1 1 1 0 Phage-related minor tail protein Dam PF05869.11 EME67535.1 - 5.3e-13 48.9 0.1 3e-12 46.4 0.1 1.9 1 1 0 1 1 1 1 DNA N-6-adenine-methyltransferase (Dam) DSPc PF00782.20 EME67536.1 - 1.5e-07 31.3 0.0 1.7e-07 31.1 0.0 1.2 1 0 0 1 1 1 1 Dual specificity phosphatase, catalytic domain Y_phosphatase PF00102.27 EME67536.1 - 0.013 15.1 0.0 0.015 14.9 0.0 1.1 1 0 0 1 1 1 0 Protein-tyrosine phosphatase CcmF_C PF16327.5 EME67538.1 - 0.018 14.3 3.3 0.15 11.3 0.1 2.1 2 0 0 2 2 2 0 Cytochrome c-type biogenesis protein CcmF C-terminal ADP_PFK_GK PF04587.15 EME67540.1 - 0.00083 18.0 0.1 0.00093 17.9 0.1 1.0 1 0 0 1 1 1 1 ADP-specific Phosphofructokinase/Glucokinase conserved region DUF4350 PF14258.6 EME67540.1 - 0.02 15.3 0.1 0.039 14.4 0.1 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4350) Cation_efflux PF01545.21 EME67541.1 - 1.1e-41 142.8 11.5 1.3e-41 142.5 11.5 1.1 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 EME67541.1 - 8.5e-10 38.6 0.1 1.3e-09 38.0 0.1 1.3 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter Acyl_CoA_thio PF02551.15 EME67541.1 - 0.17 11.7 0.0 0.27 11.1 0.0 1.3 1 0 0 1 1 1 0 Acyl-CoA thioesterase HTH_17 PF12728.7 EME67542.1 - 2.4e-06 27.6 0.0 4.3e-06 26.8 0.0 1.4 2 0 0 2 2 2 1 Helix-turn-helix domain UPF0175 PF03683.13 EME67542.1 - 0.011 15.4 0.0 0.018 14.8 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0175) LemA PF04011.12 EME67543.1 - 2.4e-25 89.2 0.0 7e-25 87.6 0.0 1.7 1 1 0 1 1 1 1 LemA family Phage_integrase PF00589.22 EME67544.1 - 7.5e-12 45.4 0.0 1.6e-11 44.3 0.0 1.5 1 1 0 1 1 1 1 Phage integrase family Phage_integr_3 PF16795.5 EME67544.1 - 0.004 17.1 0.0 0.013 15.5 0.0 1.8 2 0 0 2 2 2 1 Archaeal phage integrase Resolvase PF00239.21 EME67545.1 - 6.7e-42 143.0 1.0 8.4e-42 142.7 1.0 1.1 1 0 0 1 1 1 1 Resolvase, N terminal domain HTH_7 PF02796.15 EME67545.1 - 0.0013 18.7 0.0 0.0065 16.5 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain of resolvase HTH_38 PF13936.6 EME67545.1 - 0.06 13.1 0.3 21 5.0 0.1 3.3 3 0 0 3 3 3 0 Helix-turn-helix domain GGDEF PF00990.21 EME67548.1 - 3.7e-45 153.6 0.0 6.3e-44 149.6 0.0 2.3 2 0 0 2 2 2 1 Diguanylate cyclase, GGDEF domain Hemerythrin PF01814.23 EME67548.1 - 6.5e-09 36.5 1.5 6.5e-09 36.5 1.5 2.3 2 1 0 2 2 2 1 Hemerythrin HHE cation binding domain Response_reg PF00072.24 EME67550.1 - 3.2e-06 27.3 0.0 4.9e-06 26.7 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain Orthopox_F6 PF06601.12 EME67550.1 - 0.11 12.6 0.3 0.59 10.3 0.1 2.1 2 0 0 2 2 2 0 Orthopoxvirus F6 protein MCPsignal PF00015.21 EME67552.1 - 1.9e-28 99.4 42.1 1.4e-27 96.6 28.0 3.4 1 1 2 3 3 3 1 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF1664 PF07889.12 EME67552.1 - 0.00066 19.7 10.1 0.029 14.4 1.4 3.2 2 1 1 3 3 3 2 Protein of unknown function (DUF1664) DUF948 PF06103.11 EME67552.1 - 0.00082 19.6 15.6 0.087 13.1 1.1 3.6 1 1 2 3 3 3 3 Bacterial protein of unknown function (DUF948) Laminin_II PF06009.12 EME67552.1 - 0.0013 18.7 3.3 0.0013 18.7 3.3 3.4 1 1 2 3 3 3 1 Laminin Domain II Laminin_I PF06008.14 EME67552.1 - 0.0064 16.2 19.3 0.29 10.8 3.3 3.1 1 1 3 4 4 4 2 Laminin Domain I Myosin_tail_1 PF01576.19 EME67552.1 - 0.014 13.3 0.2 0.014 13.3 0.2 1.4 2 0 0 2 2 2 0 Myosin tail COG6 PF06419.11 EME67552.1 - 0.017 13.4 3.3 0.61 8.2 0.2 2.4 2 1 0 2 2 2 0 Conserved oligomeric complex COG6 zf-C4H2 PF10146.9 EME67552.1 - 0.022 15.1 0.5 0.083 13.2 0.1 2.0 2 0 0 2 2 2 0 Zinc finger-containing protein Syntaxin_2 PF14523.6 EME67552.1 - 0.026 14.9 6.6 0.25 11.7 0.5 3.3 1 1 3 4 4 4 0 Syntaxin-like protein SKA1 PF07160.12 EME67552.1 - 0.029 14.2 1.7 0.36 10.6 0.2 2.2 2 0 0 2 2 2 0 Spindle and kinetochore-associated protein 1 COG5 PF10392.9 EME67552.1 - 0.042 14.0 6.0 0.51 10.5 0.2 2.8 3 1 0 3 3 2 0 Golgi transport complex subunit 5 DUF3450 PF11932.8 EME67552.1 - 0.045 13.1 7.1 0.13 11.6 1.8 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF3450) Sec34 PF04136.15 EME67552.1 - 0.047 13.6 3.3 0.15 12.0 0.1 2.9 2 2 2 4 4 4 0 Sec34-like family TMF_TATA_bd PF12325.8 EME67552.1 - 0.051 13.8 2.6 0.21 11.8 0.1 2.4 2 1 0 2 2 2 0 TATA element modulatory factor 1 TATA binding EzrA PF06160.12 EME67552.1 - 0.057 11.6 2.9 0.083 11.1 0.3 2.1 1 1 0 2 2 2 0 Septation ring formation regulator, EzrA Flagellin_C PF00700.21 EME67552.1 - 0.063 13.6 0.8 0.063 13.6 0.8 3.7 3 1 0 4 4 4 0 Bacterial flagellin C-terminal helical region Vps53_N PF04100.12 EME67552.1 - 0.32 9.9 10.1 0.069 12.1 2.1 2.3 1 1 1 2 2 2 0 Vps53-like, N-terminal TMPIT PF07851.13 EME67552.1 - 0.34 10.1 1.2 1.1 8.4 0.2 2.0 2 0 0 2 2 2 0 TMPIT-like protein DASH_Dad1 PF08649.10 EME67552.1 - 0.35 11.1 3.2 1.8 8.8 0.1 3.2 3 0 0 3 3 3 0 DASH complex subunit Dad1 HAUS-augmin3 PF14932.6 EME67552.1 - 0.48 10.0 4.1 0.53 9.8 0.8 2.0 2 0 0 2 2 2 0 HAUS augmin-like complex subunit 3 DUF148 PF02520.17 EME67552.1 - 0.52 10.4 17.8 0.087 12.9 1.6 3.4 1 1 1 3 3 3 0 Domain of unknown function DUF148 DASH_Dad4 PF08650.10 EME67552.1 - 0.89 9.6 3.5 4.9 7.2 0.1 2.7 3 0 0 3 3 2 0 DASH complex subunit Dad4 FlaC_arch PF05377.11 EME67552.1 - 1.2 9.5 9.2 5.9 7.4 0.5 3.7 3 1 1 4 4 3 0 Flagella accessory protein C (FlaC) AIP3 PF03915.13 EME67552.1 - 1.4 7.9 14.0 2.8 7.0 13.9 1.4 1 1 0 1 1 1 0 Actin interacting protein 3 AATF-Che1 PF13339.6 EME67552.1 - 1.4 9.6 5.4 65 4.2 4.6 2.6 1 1 1 2 2 2 0 Apoptosis antagonizing transcription factor Acyl-CoA_dh_C PF12806.7 EME67552.1 - 1.5 9.0 14.7 0.3 11.3 0.8 3.3 1 1 2 3 3 3 0 Acetyl-CoA dehydrogenase C-terminal like PIN_8 PF18476.1 EME67552.1 - 2 8.2 4.6 23 4.8 0.4 2.6 1 1 2 3 3 3 0 PIN like domain Flu_M1_C PF08289.11 EME67552.1 - 4 7.7 17.3 2.7 8.3 0.4 3.6 1 1 1 3 3 3 0 Influenza Matrix protein (M1) C-terminal domain GSH_synth_ATP PF03917.17 EME67552.1 - 4.7 5.9 11.6 18 3.9 11.6 1.8 1 1 0 1 1 1 0 Eukaryotic glutathione synthase, ATP binding domain rve PF00665.26 EME67553.1 - 2.9e-16 59.7 0.0 7.2e-16 58.5 0.0 1.7 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.6 EME67553.1 - 0.00032 20.4 0.1 0.0011 18.7 0.0 2.0 2 0 0 2 2 2 1 Integrase core domain IstB_IS21 PF01695.17 EME67554.1 - 6.4e-58 195.4 0.1 8e-58 195.1 0.1 1.1 1 0 0 1 1 1 1 IstB-like ATP binding protein Bac_DnaA PF00308.18 EME67554.1 - 6.9e-08 32.6 0.0 9.9e-08 32.1 0.0 1.2 1 0 0 1 1 1 1 Bacterial dnaA protein AAA_16 PF13191.6 EME67554.1 - 6e-05 23.5 0.2 0.00013 22.4 0.0 1.7 2 0 0 2 2 2 1 AAA ATPase domain DUF815 PF05673.13 EME67554.1 - 8.9e-05 21.8 0.0 0.00013 21.3 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_30 PF13604.6 EME67554.1 - 0.00042 20.1 0.0 0.00084 19.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 EME67554.1 - 0.00098 19.4 1.4 0.024 14.9 1.4 2.2 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.6 EME67554.1 - 0.0036 17.1 0.0 0.005 16.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain RNA_helicase PF00910.22 EME67554.1 - 0.0098 16.3 0.0 0.024 15.0 0.0 1.6 1 1 0 1 1 1 1 RNA helicase AAA_7 PF12775.7 EME67554.1 - 0.014 14.9 0.1 0.11 12.0 0.1 2.1 1 1 0 1 1 1 0 P-loop containing dynein motor region CobA_CobO_BtuR PF02572.15 EME67554.1 - 0.023 15.0 0.9 0.13 12.5 0.9 1.9 1 1 0 1 1 1 0 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP DUF87 PF01935.17 EME67554.1 - 0.026 14.6 0.2 0.058 13.5 0.1 1.5 1 1 0 1 1 1 0 Helicase HerA, central domain AAA PF00004.29 EME67554.1 - 0.027 14.9 0.0 0.049 14.0 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 EME67554.1 - 0.034 13.9 0.1 0.078 12.7 0.1 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain ABC_tran PF00005.27 EME67554.1 - 0.04 14.4 0.0 0.13 12.8 0.0 1.6 1 1 0 1 1 1 0 ABC transporter AAA_5 PF07728.14 EME67554.1 - 0.045 13.8 0.0 0.1 12.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_25 PF13481.6 EME67554.1 - 0.055 13.0 2.8 0.94 9.0 0.1 2.6 2 1 1 3 3 3 0 AAA domain AAA_19 PF13245.6 EME67554.1 - 0.074 13.4 0.0 0.15 12.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain CbiA PF01656.23 EME67554.1 - 0.12 12.4 0.0 0.2 11.7 0.0 1.5 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_NifH PF00142.18 EME67554.1 - 0.18 11.2 0.0 0.28 10.6 0.0 1.3 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_23 PF13476.6 EME67554.1 - 0.24 11.9 0.1 0.34 11.4 0.1 1.4 1 1 0 1 1 1 0 AAA domain CheZ PF04344.13 EME67556.1 - 1.5e-16 61.0 1.5 2.7e-11 43.8 0.0 2.6 2 1 1 3 3 3 2 Chemotaxis phosphatase, CheZ GIT1_C PF12205.8 EME67556.1 - 0.0051 16.9 0.1 0.27 11.4 0.0 2.2 2 0 0 2 2 2 1 G protein-coupled receptor kinase-interacting protein 1 C term Med5 PF08689.10 EME67556.1 - 0.039 11.8 0.3 2 6.1 0.0 2.0 1 1 1 2 2 2 0 Mediator complex subunit Med5 DUF1018 PF06252.12 EME67556.1 - 0.055 14.5 0.0 0.088 13.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1018) EzrA PF06160.12 EME67556.1 - 0.1 10.8 0.4 0.25 9.5 0.1 1.6 1 1 0 1 1 1 0 Septation ring formation regulator, EzrA SH3BP5 PF05276.14 EME67556.1 - 0.11 12.3 0.1 0.18 11.5 0.1 1.3 1 1 0 1 1 1 0 SH3 domain-binding protein 5 (SH3BP5) DUF1664 PF07889.12 EME67556.1 - 0.14 12.2 0.5 1.2 9.2 0.3 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) Baculo_PEP_C PF04513.12 EME67556.1 - 0.18 11.8 1.1 3.7 7.6 0.6 2.9 2 1 2 4 4 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus ABC_tran_CTD PF16326.5 EME67556.1 - 0.25 11.6 3.3 4.7 7.5 0.7 2.8 3 1 0 3 3 3 0 ABC transporter C-terminal domain Response_reg PF00072.24 EME67557.1 - 1.2e-28 99.5 0.1 1.4e-28 99.3 0.1 1.0 1 0 0 1 1 1 1 Response regulator receiver domain Secretin_N PF03958.17 EME67557.1 - 0.1 13.0 0.1 0.21 12.0 0.1 1.5 1 0 0 1 1 1 0 Bacterial type II/III secretion system short domain ApoB100_C PF12491.8 EME67557.1 - 0.15 12.1 0.0 0.28 11.2 0.0 1.5 1 0 0 1 1 1 0 Apolipoprotein B100 C terminal Ceramidase_alk PF04734.13 EME67557.1 - 0.17 10.5 0.0 0.18 10.4 0.0 1.1 1 0 0 1 1 1 0 Neutral/alkaline non-lysosomal ceramidase, N-terminal MgtE_N PF03448.17 EME67558.1 - 2.8e-07 31.1 1.5 2.8e-07 31.1 1.5 1.9 1 1 0 2 2 2 1 MgtE intracellular N domain FliG_M PF14841.6 EME67558.1 - 0.00086 19.5 5.5 0.053 13.8 0.1 3.1 2 2 1 3 3 3 2 FliG middle domain DUF3552 PF12072.8 EME67558.1 - 0.011 15.1 10.4 0.017 14.6 10.4 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF3552) ECM11 PF15463.6 EME67558.1 - 0.017 15.7 2.5 0.017 15.7 2.5 2.5 1 1 1 2 2 2 0 Extracellular mutant protein 11 FliG_N PF14842.6 EME67558.1 - 0.018 15.6 4.1 0.31 11.6 0.2 2.9 1 1 2 3 3 3 0 FliG N-terminal domain PPR_3 PF13812.6 EME67558.1 - 0.026 14.6 1.9 0.12 12.5 0.2 2.6 1 1 2 3 3 3 0 Pentatricopeptide repeat domain Turandot PF07240.11 EME67558.1 - 0.098 12.6 0.7 9.5 6.3 0.1 2.3 1 1 1 2 2 2 0 Stress-inducible humoral factor Turandot Spc7 PF08317.11 EME67558.1 - 0.53 9.1 9.7 0.63 8.9 9.7 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein Telomere_reg-2 PF10193.9 EME67558.1 - 1.8 9.1 4.5 9 6.8 4.5 2.0 1 1 0 1 1 1 0 Telomere length regulation protein Resolvase PF00239.21 EME67559.1 - 9.3e-40 136.1 1.0 1.2e-39 135.7 1.0 1.2 1 0 0 1 1 1 1 Resolvase, N terminal domain HTH_7 PF02796.15 EME67559.1 - 0.00062 19.8 0.0 0.0017 18.4 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase GIT1_C PF12205.8 EME67559.1 - 0.045 13.9 0.0 1.5 8.9 0.0 2.3 2 1 0 2 2 2 0 G protein-coupled receptor kinase-interacting protein 1 C term HTH_28 PF13518.6 EME67559.1 - 0.11 12.7 0.3 0.36 11.0 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_38 PF13936.6 EME67559.1 - 0.12 12.1 1.0 0.39 10.5 0.1 2.3 3 0 0 3 3 3 0 Helix-turn-helix domain Resolvase PF00239.21 EME67561.1 - 0.031 14.4 0.4 0.1 12.7 0.0 2.0 2 1 0 2 2 2 0 Resolvase, N terminal domain PhageMin_Tail PF10145.9 EME67563.1 - 0.013 15.4 0.2 0.019 14.8 0.2 1.1 1 0 0 1 1 1 0 Phage-related minor tail protein Phage_integrase PF00589.22 EME67564.1 - 1e-18 67.7 0.0 1.3e-18 67.4 0.0 1.1 1 0 0 1 1 1 1 Phage integrase family PRiA4_ORF3 PF07929.11 EME67565.1 - 7.1e-59 198.4 0.0 8.5e-59 198.1 0.0 1.0 1 0 0 1 1 1 1 Plasmid pRiA4b ORF-3-like protein DDE_Tnp_IS66 PF03050.14 EME67566.1 - 4.4e-92 308.5 0.0 7.6e-92 307.8 0.0 1.4 1 0 0 1 1 1 1 Transposase IS66 family DDE_Tnp_IS66_C PF13817.6 EME67566.1 - 8.2e-19 67.6 0.2 3.6e-18 65.5 0.1 2.2 2 0 0 2 2 2 1 IS66 C-terminal element zf-IS66 PF13005.7 EME67566.1 - 3e-17 62.8 4.5 3e-17 62.8 4.5 2.1 2 0 0 2 2 2 1 zinc-finger binding domain of transposase IS66 LZ_Tnp_IS66 PF13007.7 EME67566.1 - 3.2e-17 63.1 9.4 3.2e-17 63.1 9.4 2.0 2 0 0 2 2 2 1 Transposase C of IS166 homeodomain MCPVI PF02993.14 EME67566.1 - 0.032 14.1 0.1 0.053 13.3 0.1 1.3 1 0 0 1 1 1 0 Minor capsid protein VI TnpB_IS66 PF05717.13 EME67567.1 - 5.4e-42 141.8 0.0 6.1e-42 141.6 0.0 1.0 1 0 0 1 1 1 1 IS66 Orf2 like protein HTH_Tnp_1 PF01527.20 EME67568.1 - 2.3e-15 56.6 1.0 3.2e-15 56.2 1.0 1.2 1 0 0 1 1 1 1 Transposase HTH_23 PF13384.6 EME67568.1 - 0.0015 18.3 1.5 0.0027 17.4 1.5 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.6 EME67568.1 - 0.003 17.6 1.0 0.0084 16.2 1.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain POR PF01558.18 EME67570.1 - 5.8e-27 94.9 0.2 1.1e-26 94.0 0.2 1.4 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.21 EME67570.1 - 1.6e-06 28.0 0.1 1.7e-05 24.7 0.4 2.5 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Fer4_10 PF13237.6 EME67570.1 - 0.29 11.3 2.9 18 5.5 0.8 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain TPR_19 PF14559.6 EME67571.1 - 3e-06 27.6 1.1 6.7e-05 23.3 0.2 1.9 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_14 PF13428.6 EME67571.1 - 1.1e-05 25.8 5.3 0.0026 18.4 2.4 2.4 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_12 PF13424.6 EME67571.1 - 1.7e-05 25.0 2.6 0.0039 17.5 0.2 2.2 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_2 PF07719.17 EME67571.1 - 0.0002 21.2 0.6 0.08 13.1 0.0 2.4 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_1 PF00515.28 EME67571.1 - 0.00033 20.3 0.2 0.011 15.5 0.0 2.3 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_16 PF13432.6 EME67571.1 - 0.0048 17.5 2.5 0.008 16.8 2.5 1.4 1 0 0 1 1 1 1 Tetratricopeptide repeat ANAPC3 PF12895.7 EME67571.1 - 0.014 15.6 0.0 0.03 14.5 0.0 1.4 1 1 0 1 1 1 0 Anaphase-promoting complex, cyclosome, subunit 3 TPR_17 PF13431.6 EME67571.1 - 0.026 14.9 0.0 0.15 12.5 0.0 2.0 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_6 PF13174.6 EME67571.1 - 0.032 14.8 0.8 0.62 10.8 0.1 2.3 2 0 0 2 2 2 0 Tetratricopeptide repeat GGDEF PF00990.21 EME67573.1 - 1.8e-39 135.0 0.0 9.2e-36 123.0 0.0 2.1 2 0 0 2 2 2 2 Diguanylate cyclase, GGDEF domain Hemerythrin PF01814.23 EME67573.1 - 1.8e-09 38.3 0.9 3.1e-09 37.5 0.9 1.4 1 0 0 1 1 1 1 Hemerythrin HHE cation binding domain ATP-cone PF03477.16 EME67575.1 - 4.3e-19 68.9 0.3 4.9e-19 68.7 0.3 1.0 1 0 0 1 1 1 1 ATP cone domain PBC PF03792.13 EME67575.1 - 0.032 14.0 0.1 0.05 13.4 0.1 1.3 1 0 0 1 1 1 0 PBC domain Response_reg PF00072.24 EME67576.1 - 8.4e-25 87.1 0.1 9.4e-25 87.0 0.1 1.0 1 0 0 1 1 1 1 Response regulator receiver domain Phage_integrase PF00589.22 EME67578.1 - 1.1e-15 57.9 0.0 1.3e-15 57.6 0.0 1.1 1 0 0 1 1 1 1 Phage integrase family DUF262 PF03235.14 EME67579.1 - 2.4e-32 112.9 2.6 2.4e-32 112.9 2.6 2.3 3 0 0 3 3 3 1 Protein of unknown function DUF262 DUF1524 PF07510.11 EME67579.1 - 0.00014 21.8 0.1 0.00036 20.4 0.1 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF1524) AFG1_ATPase PF03969.16 EME67579.1 - 0.023 13.6 0.0 0.05 12.5 0.0 1.4 1 0 0 1 1 1 0 AFG1-like ATPase Dabb PF07876.12 EME67579.1 - 0.025 15.2 0.0 0.084 13.5 0.0 1.8 1 0 0 1 1 1 0 Stress responsive A/B Barrel Domain DUF3243 PF11588.8 EME67579.1 - 0.057 13.7 0.0 0.16 12.3 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF3243) Phage_integrase PF00589.22 EME67581.1 - 1.9e-12 47.3 2.8 1e-10 41.7 0.1 2.8 2 1 1 3 3 3 2 Phage integrase family Phage_int_SAM_3 PF14659.6 EME67581.1 - 0.00067 19.9 0.0 0.0028 17.9 0.0 2.0 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Response_reg PF00072.24 EME67582.1 - 6.8e-12 45.5 0.3 9.1e-12 45.1 0.3 1.2 1 0 0 1 1 1 1 Response regulator receiver domain RbsD_FucU PF05025.13 EME67582.1 - 0.084 13.3 0.2 0.14 12.6 0.0 1.5 2 0 0 2 2 2 0 RbsD / FucU transport protein family HemolysinCabind PF00353.19 EME67584.1 - 1.2e-27 95.4 104.1 7.4e-09 35.4 19.4 6.0 4 2 2 6 6 6 5 RTX calcium-binding nonapeptide repeat (4 copies) HemolysinCabind PF00353.19 EME67585.1 - 7.3e-72 236.7 216.3 2.5e-10 40.1 11.9 14.7 9 5 6 16 16 16 15 RTX calcium-binding nonapeptide repeat (4 copies) Cadherin_5 PF17892.1 EME67585.1 - 3.3e-60 200.1 23.5 1.9e-32 111.2 4.1 4.4 3 1 1 4 4 4 3 Cadherin-like domain Big_9 PF17963.1 EME67585.1 - 4.4e-28 97.9 25.3 2.8e-16 60.0 8.7 9.2 6 3 1 7 7 7 2 Bacterial Ig domain Cadherin_4 PF17803.1 EME67585.1 - 1.1e-21 77.2 23.4 1.8e-12 47.7 8.6 9.2 5 3 0 5 5 5 2 Bacterial cadherin-like domain EKR PF10371.9 EME67585.1 - 0.088 12.6 0.6 4.2 7.2 0.2 2.9 2 0 0 2 2 2 0 Domain of unknown function EAL PF00563.20 EME67586.1 - 8.9e-68 228.4 0.0 1.6e-67 227.6 0.0 1.4 1 0 0 1 1 1 1 EAL domain GGDEF PF00990.21 EME67586.1 - 4.8e-28 97.9 0.0 7.8e-28 97.2 0.0 1.3 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain PAS_9 PF13426.7 EME67586.1 - 6.4e-12 45.6 0.0 2.6e-11 43.7 0.0 2.0 2 0 0 2 2 2 1 PAS domain PAS PF00989.25 EME67586.1 - 6.2e-11 42.3 0.0 1.1e-10 41.4 0.0 1.5 1 0 0 1 1 1 1 PAS fold PAS_3 PF08447.12 EME67586.1 - 7.8e-07 29.3 0.1 1.8e-06 28.1 0.1 1.7 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 EME67586.1 - 0.0025 17.8 0.0 0.0069 16.4 0.0 1.8 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.10 EME67586.1 - 0.036 14.3 0.0 0.097 12.9 0.0 1.8 1 0 0 1 1 1 0 PAS fold DSPc PF00782.20 EME67588.1 - 7.2e-07 29.1 0.0 9.8e-07 28.7 0.0 1.1 1 0 0 1 1 1 1 Dual specificity phosphatase, catalytic domain Transket_pyr PF02779.24 EME67589.1 - 1e-45 155.6 0.1 1.6e-45 155.0 0.1 1.3 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 EME67589.1 - 4e-42 143.0 0.8 7.9e-42 142.1 0.8 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain Biotin_lipoyl PF00364.22 EME67589.1 - 6.2e-19 67.6 1.2 1.3e-18 66.6 1.2 1.6 1 0 0 1 1 1 1 Biotin-requiring enzyme PFOR_II PF17147.4 EME67589.1 - 0.00076 19.8 0.3 0.0017 18.6 0.3 1.6 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Biotin_lipoyl_2 PF13533.6 EME67589.1 - 0.0017 18.2 0.0 0.0036 17.1 0.0 1.5 1 0 0 1 1 1 1 Biotin-lipoyl like Alba PF01918.21 EME67589.1 - 0.011 15.6 0.2 0.023 14.5 0.2 1.5 1 0 0 1 1 1 0 Alba QRPTase_N PF02749.16 EME67589.1 - 0.047 13.7 0.1 1.3 9.1 0.0 2.7 2 0 0 2 2 2 0 Quinolinate phosphoribosyl transferase, N-terminal domain E1_dh PF00676.20 EME67590.1 - 3.9e-98 328.1 0.0 4.5e-98 327.9 0.0 1.0 1 0 0 1 1 1 1 Dehydrogenase E1 component TPP_enzyme_C PF02775.21 EME67590.1 - 0.00011 22.0 1.6 0.00035 20.4 1.6 1.8 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.6 EME67590.1 - 0.00032 20.0 0.0 0.0005 19.4 0.0 1.3 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase OEP PF02321.18 EME67591.1 - 4.4e-43 147.3 13.0 5.8e-24 84.9 2.9 2.1 2 0 0 2 2 2 2 Outer membrane efflux protein TBCA PF02970.16 EME67591.1 - 0.12 12.8 0.0 0.12 12.8 0.0 2.5 4 0 0 4 4 4 0 Tubulin binding cofactor A MethyltransfD12 PF02086.15 EME67593.1 - 1.7e-12 47.5 0.0 6.9e-12 45.6 0.0 1.8 1 1 0 1 1 1 1 D12 class N6 adenine-specific DNA methyltransferase Phage_integrase PF00589.22 EME67594.1 - 9.7e-15 54.8 0.0 1.2e-14 54.5 0.0 1.1 1 0 0 1 1 1 1 Phage integrase family PhageMin_Tail PF10145.9 EME67596.1 - 0.015 15.2 0.2 0.02 14.8 0.2 1.1 1 0 0 1 1 1 0 Phage-related minor tail protein DUF2255 PF10012.9 EME67597.1 - 0.077 13.1 0.1 0.2 11.8 0.1 1.7 2 1 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2255) CBM64 PF18666.1 EME67597.1 - 0.092 12.8 0.0 0.19 11.8 0.0 1.5 1 0 0 1 1 1 0 Carbohydrate-binding module 64 PriCT_2 PF08707.11 EME67598.1 - 2.6e-18 66.2 0.4 2.2e-17 63.2 0.1 2.3 2 0 0 2 2 2 1 Primase C terminal 2 (PriCT-2) KORA PF16509.5 EME67599.1 - 0.0068 16.7 0.0 0.04 14.2 0.0 2.1 2 0 0 2 2 2 1 TrfB plasmid transcriptional repressor MarR_2 PF12802.7 EME67599.1 - 0.011 15.7 0.3 5.6 6.9 0.1 2.4 2 0 0 2 2 2 0 MarR family Terminase_GpA PF05876.12 EME67600.1 - 2.1e-193 643.9 0.0 2.5e-193 643.7 0.0 1.0 1 0 0 1 1 1 1 Phage terminase large subunit (GpA) KAAG1 PF15354.6 EME67600.1 - 0.081 13.5 0.0 0.32 11.6 0.0 2.1 1 0 0 1 1 1 0 Kidney-associated antigen 1 Cadherin_5 PF17892.1 EME67601.1 - 2.5e-217 704.0 96.1 1.2e-25 89.3 3.8 10.5 10 0 0 10 10 10 10 Cadherin-like domain Big_9 PF17963.1 EME67601.1 - 8.8e-180 584.1 161.2 1.8e-20 73.4 10.8 12.0 12 1 0 12 12 12 10 Bacterial Ig domain Cadherin_4 PF17803.1 EME67601.1 - 1.4e-118 387.6 160.9 8.3e-15 55.2 8.8 13.0 13 0 0 13 13 13 10 Bacterial cadherin-like domain Cadherin_3 PF16184.5 EME67601.1 - 5.5e-18 65.0 8.9 0.27 11.2 0.0 10.6 10 1 0 10 10 10 7 Cadherin-like HemolysinCabind PF00353.19 EME67601.1 - 9e-17 60.7 36.5 5.2e-10 39.1 13.4 6.4 6 1 1 7 7 7 2 RTX calcium-binding nonapeptide repeat (4 copies) TPR_19 PF14559.6 EME67602.1 - 6.5e-10 39.4 19.1 0.00045 20.7 3.6 4.3 1 1 1 3 3 3 3 Tetratricopeptide repeat TPR_16 PF13432.6 EME67602.1 - 2.7e-09 37.5 33.7 6.6e-05 23.5 5.0 4.7 3 1 1 4 4 4 3 Tetratricopeptide repeat Glyco_transf_9 PF01075.17 EME67602.1 - 5.6e-08 32.4 0.0 9.4e-08 31.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase family 9 (heptosyltransferase) TPR_12 PF13424.6 EME67602.1 - 8.5e-08 32.4 18.2 1.3e-05 25.4 7.2 4.2 2 2 1 3 3 3 3 Tetratricopeptide repeat TPR_2 PF07719.17 EME67602.1 - 2.7e-06 27.1 16.8 0.0071 16.4 0.2 5.3 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_14 PF13428.6 EME67602.1 - 1.2e-05 25.7 25.3 0.18 12.7 5.0 6.2 2 1 3 5 5 4 3 Tetratricopeptide repeat TPR_1 PF00515.28 EME67602.1 - 1.9e-05 24.3 4.9 0.64 9.9 0.0 4.5 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_17 PF13431.6 EME67602.1 - 2e-05 24.6 5.0 0.22 12.0 0.4 3.8 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_10 PF13374.6 EME67602.1 - 0.00019 21.2 27.6 0.0015 18.3 0.8 5.3 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_11 PF13414.6 EME67602.1 - 0.0023 17.6 1.8 0.038 13.7 0.4 2.6 2 0 0 2 2 2 1 TPR repeat TPR_8 PF13181.6 EME67602.1 - 0.0032 17.6 1.3 3.2 8.2 0.0 4.4 4 0 0 4 4 4 1 Tetratricopeptide repeat ANAPC3 PF12895.7 EME67602.1 - 0.0036 17.5 0.1 0.044 14.0 0.0 2.4 1 1 1 2 2 2 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_7 PF13176.6 EME67602.1 - 0.0038 17.2 6.0 1.4 9.1 0.1 4.5 3 1 1 4 4 4 1 Tetratricopeptide repeat SpoVR PF04293.13 EME67603.1 - 2.8e-167 556.7 1.4 3.3e-167 556.4 1.4 1.0 1 0 0 1 1 1 1 SpoVR like protein Fucose_iso_N2 PF07882.12 EME67603.1 - 0.098 12.2 0.0 0.2 11.2 0.0 1.5 1 0 0 1 1 1 0 L-fucose isomerase, second N-terminal domain DUF444 PF04285.12 EME67604.1 - 9.1e-177 588.3 0.0 1e-176 588.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF444) VWA_CoxE PF05762.14 EME67604.1 - 0.0075 15.7 2.4 0.03 13.7 0.3 2.6 2 1 1 3 3 3 1 VWA domain containing CoxE-like protein IMS PF00817.20 EME67605.1 - 0.0037 17.3 0.0 0.0038 17.2 0.0 1.0 1 0 0 1 1 1 1 impB/mucB/samB family DUF5486 PF17588.2 EME67605.1 - 0.15 12.0 0.0 0.19 11.6 0.0 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5486) Peptidase_S24 PF00717.23 EME67606.1 - 3.2e-15 55.8 0.0 4.8e-15 55.3 0.0 1.3 1 0 0 1 1 1 1 Peptidase S24-like DDE_Tnp_IS1595 PF12762.7 EME67607.1 - 3.8e-35 121.1 0.0 4.7e-35 120.8 0.0 1.1 1 0 0 1 1 1 1 ISXO2-like transposase domain Phage_integrase PF00589.22 EME67608.1 - 2.5e-21 76.2 0.0 3.2e-21 75.9 0.0 1.1 1 0 0 1 1 1 1 Phage integrase family DUF3365 PF11845.8 EME67609.1 - 3.2e-28 99.0 0.0 7.6e-28 97.8 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF3365) GAF_2 PF13185.6 EME67609.1 - 1.3e-18 67.6 0.0 2.9e-18 66.5 0.0 1.7 1 0 0 1 1 1 1 GAF domain HisKA PF00512.25 EME67609.1 - 1.4e-11 44.2 0.0 6e-11 42.2 0.0 2.2 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.7 EME67609.1 - 2.5e-11 43.7 0.0 6.3e-11 42.5 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 EME67609.1 - 5.3e-09 36.1 0.0 2e-08 34.2 0.0 2.0 1 0 0 1 1 1 1 PAS fold GAF PF01590.26 EME67609.1 - 5.4e-06 27.1 0.0 2.2e-05 25.1 0.0 2.1 2 0 0 2 2 2 1 GAF domain PAS_3 PF08447.12 EME67609.1 - 8.8e-06 25.9 0.0 3.2e-05 24.1 0.0 2.0 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.10 EME67609.1 - 0.0022 18.2 0.0 0.03 14.6 0.0 2.9 4 0 0 4 4 4 1 PAS fold GAF_3 PF13492.6 EME67609.1 - 0.0048 17.2 0.0 0.019 15.3 0.0 2.2 2 1 0 2 2 1 1 GAF domain HATPase_c PF02518.26 EME67609.1 - 0.0071 16.8 0.0 0.015 15.8 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 EME67609.1 - 0.083 12.9 0.0 0.36 10.9 0.0 2.1 1 0 0 1 1 1 0 PAS domain TOBE_2 PF08402.10 EME67611.1 - 0.087 13.0 0.0 0.11 12.6 0.0 1.1 1 0 0 1 1 1 0 TOBE domain EVC2_like PF12297.8 EME67611.1 - 0.39 9.4 0.9 0.4 9.3 0.9 1.0 1 0 0 1 1 1 0 Ellis van Creveld protein 2 like protein Hemerythrin PF01814.23 EME67612.1 - 5.2e-11 43.3 0.4 6.1e-11 43.1 0.4 1.1 1 0 0 1 1 1 1 Hemerythrin HHE cation binding domain Hemerythrin PF01814.23 EME67615.1 - 8e-11 42.7 1.8 1e-10 42.3 1.8 1.2 1 0 0 1 1 1 1 Hemerythrin HHE cation binding domain SpoVG PF04026.12 EME67617.1 - 1.4e-06 28.3 0.0 2.1e-06 27.9 0.0 1.2 1 0 0 1 1 1 1 SpoVG Mago-bind PF09282.10 EME67617.1 - 0.1 12.5 0.6 0.48 10.3 0.0 2.1 2 0 0 2 2 2 0 Mago binding HATPase_c PF02518.26 EME67618.1 - 1.1e-25 90.4 0.0 2.1e-25 89.4 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF3365 PF11845.8 EME67618.1 - 6.5e-23 81.8 0.0 1.6e-22 80.5 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF3365) GAF_2 PF13185.6 EME67618.1 - 3.5e-19 69.5 0.0 7.9e-19 68.3 0.0 1.6 1 0 0 1 1 1 1 GAF domain PAS_9 PF13426.7 EME67618.1 - 1.5e-12 47.6 0.0 3.9e-12 46.3 0.0 1.8 1 0 0 1 1 1 1 PAS domain HisKA PF00512.25 EME67618.1 - 1.1e-11 44.5 0.0 3.1e-11 43.1 0.0 1.8 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS PF00989.25 EME67618.1 - 1.4e-10 41.1 0.0 5.1e-10 39.4 0.0 2.0 1 0 0 1 1 1 1 PAS fold PAS_3 PF08447.12 EME67618.1 - 1.5e-07 31.6 0.1 2.7e-06 27.5 0.0 2.8 2 0 0 2 2 2 1 PAS fold GAF PF01590.26 EME67618.1 - 5.8e-06 27.0 0.0 2.1e-05 25.2 0.0 2.0 2 0 0 2 2 2 1 GAF domain PAS_4 PF08448.10 EME67618.1 - 8e-06 26.1 0.0 0.00024 21.3 0.0 3.2 3 0 0 3 3 3 1 PAS fold HATPase_c_5 PF14501.6 EME67618.1 - 0.0018 18.2 0.0 0.0044 16.9 0.0 1.6 1 0 0 1 1 1 1 GHKL domain PAS_8 PF13188.7 EME67618.1 - 0.004 17.2 0.0 0.017 15.1 0.0 2.1 1 0 0 1 1 1 1 PAS domain GAF_3 PF13492.6 EME67618.1 - 0.0084 16.5 0.0 0.032 14.6 0.0 2.2 1 1 0 1 1 1 1 GAF domain HATPase_c_2 PF13581.6 EME67618.1 - 0.084 12.8 0.0 0.17 11.8 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain Cytochrome_CBB3 PF13442.6 EME67618.1 - 0.14 12.5 0.0 0.41 11.0 0.0 1.8 1 1 0 1 1 1 0 Cytochrome C oxidase, cbb3-type, subunit III HATPase_c PF02518.26 EME67619.1 - 1e-25 90.4 0.0 2.3e-25 89.3 0.0 1.6 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.12 EME67619.1 - 1.4e-11 44.5 0.0 1e-10 41.7 0.0 2.2 2 0 0 2 2 2 1 PAS fold HisKA PF00512.25 EME67619.1 - 3.2e-10 39.9 0.0 6.1e-10 39.0 0.0 1.5 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.6 EME67619.1 - 7.5e-05 22.6 0.0 0.00012 21.9 0.0 1.3 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.6 EME67619.1 - 0.041 13.7 0.0 0.076 12.8 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DMT_6 PF04342.12 EME67620.1 - 2.4e-11 43.7 1.1 2.7e-11 43.6 1.1 1.0 1 0 0 1 1 1 1 Putative member of DMT superfamily (DUF486) EamA PF00892.20 EME67620.1 - 0.00011 22.3 1.5 0.00012 22.2 1.5 1.1 1 0 0 1 1 1 1 EamA-like transporter family TspO_MBR PF03073.15 EME67621.1 - 5.9e-43 146.2 15.6 7e-43 145.9 15.6 1.1 1 0 0 1 1 1 1 TspO/MBR family CcmF_C PF16327.5 EME67621.1 - 0.43 9.8 8.6 0.52 9.5 7.7 1.5 1 1 0 1 1 1 0 Cytochrome c-type biogenesis protein CcmF C-terminal DUF3572 PF12096.8 EME67622.1 - 1.8e-20 72.9 0.2 1.9e-20 72.8 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3572) UBA_4 PF14555.6 EME67622.1 - 0.052 13.4 0.0 0.087 12.7 0.0 1.4 1 0 0 1 1 1 0 UBA-like domain DUF2786 PF10979.8 EME67623.1 - 2.4e-08 33.7 4.1 5.1e-08 32.7 4.1 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF2786) ACT PF01842.25 EME67623.1 - 0.1 12.4 0.2 0.34 10.7 0.0 1.9 2 0 0 2 2 2 0 ACT domain G-gamma PF00631.22 EME67623.1 - 0.23 11.5 0.9 0.4 10.7 0.2 1.7 2 0 0 2 2 2 0 GGL domain Response_reg PF00072.24 EME67624.1 - 4.3e-17 62.3 0.0 6.4e-17 61.7 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain GFO_IDH_MocA PF01408.22 EME67624.1 - 0.012 16.5 0.0 0.016 16.1 0.0 1.2 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold Hemerythrin PF01814.23 EME67625.1 - 4.6e-10 40.2 2.4 6.1e-10 39.8 2.4 1.1 1 0 0 1 1 1 1 Hemerythrin HHE cation binding domain WYL_2 PF10902.8 EME67625.1 - 0.0088 16.4 0.1 0.024 15.0 0.1 1.7 1 0 0 1 1 1 1 WYL_2, Sm-like SH3 beta-barrel fold Utp13 PF08625.11 EME67625.1 - 0.055 13.4 0.6 0.11 12.4 0.2 1.7 1 1 0 1 1 1 0 Utp13 specific WD40 associated domain Hemerythrin PF01814.23 EME67626.1 - 1.6e-09 38.5 0.2 3.6e-09 37.3 0.2 1.6 1 0 0 1 1 1 1 Hemerythrin HHE cation binding domain Flu_M1_C PF08289.11 EME67626.1 - 0.93 9.8 4.7 1.5 9.0 0.2 3.1 3 0 0 3 3 3 0 Influenza Matrix protein (M1) C-terminal domain PHB_acc_N PF07879.11 EME67627.1 - 2.3e-31 107.6 1.3 3.2e-31 107.2 1.3 1.2 1 0 0 1 1 1 1 PHB/PHA accumulation regulator DNA-binding domain PHB_acc PF05233.13 EME67627.1 - 2e-16 59.7 0.4 1.1e-15 57.3 0.1 2.3 2 0 0 2 2 2 1 PHB accumulation regulatory domain Abhydrolase_1 PF00561.20 EME67629.1 - 3e-15 56.6 0.0 1.1e-14 54.7 0.0 1.8 1 1 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 EME67629.1 - 6.4e-09 35.4 0.0 3.7e-06 26.4 0.0 2.3 2 0 0 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 EME67629.1 - 4.9e-08 33.9 10.3 4.9e-08 33.9 10.3 2.0 1 1 1 2 2 2 1 Alpha/beta hydrolase family PhaC_N PF07167.13 EME67629.1 - 6.9e-06 25.8 0.0 1.1e-05 25.2 0.0 1.2 1 0 0 1 1 1 1 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus DLH PF01738.18 EME67629.1 - 4.5e-05 23.1 0.0 0.00011 21.9 0.0 1.5 2 0 0 2 2 2 1 Dienelactone hydrolase family Esterase PF00756.20 EME67629.1 - 0.00051 19.8 0.0 0.00078 19.2 0.0 1.2 1 0 0 1 1 1 1 Putative esterase Pam17 PF08566.10 EME67629.1 - 0.016 15.1 0.0 0.49 10.2 0.0 2.5 2 0 0 2 2 2 0 Mitochondrial import protein Pam17 PGAP1 PF07819.13 EME67629.1 - 0.032 13.9 0.0 0.045 13.5 0.0 1.2 1 0 0 1 1 1 0 PGAP1-like protein Peptidase_S9 PF00326.21 EME67629.1 - 0.11 11.9 0.0 0.88 9.0 0.0 2.1 2 0 0 2 2 2 0 Prolyl oligopeptidase family FSH1 PF03959.13 EME67629.1 - 0.15 11.7 0.0 0.83 9.3 0.0 1.9 2 0 0 2 2 2 0 Serine hydrolase (FSH1) DUF3141 PF11339.8 EME67629.1 - 0.25 9.7 0.2 0.45 8.9 0.0 1.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3141) Thiolase_N PF00108.23 EME67630.1 - 3.6e-98 328.1 10.9 4.7e-98 327.7 10.9 1.1 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 EME67630.1 - 4.2e-53 178.2 7.1 4.8e-53 178.0 1.8 2.4 2 0 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 EME67630.1 - 0.0004 20.0 2.0 0.0004 20.0 2.0 3.1 3 1 1 4 4 4 1 Beta-ketoacyl synthase, N-terminal domain adh_short_C2 PF13561.6 EME67631.1 - 4.8e-59 199.8 2.8 5.8e-59 199.5 2.8 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 EME67631.1 - 2.8e-55 186.8 2.2 3.4e-55 186.5 2.2 1.0 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 EME67631.1 - 4.6e-17 62.5 0.3 6.4e-17 62.0 0.3 1.2 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.6 EME67631.1 - 0.00053 19.9 0.3 0.00095 19.1 0.3 1.3 1 1 0 1 1 1 1 NAD(P)H-binding Epimerase PF01370.21 EME67631.1 - 0.00094 18.7 0.3 0.0025 17.3 0.3 1.8 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family LytR_C PF13399.6 EME67631.1 - 0.012 16.6 0.2 3.2 8.8 0.0 2.4 2 0 0 2 2 2 0 LytR cell envelope-related transcriptional attenuator SH3_16 PF18348.1 EME67632.1 - 0.037 13.8 0.2 0.12 12.2 0.2 1.9 2 0 0 2 2 2 0 Bacterial dipeptidyl-peptidase Sh3 domain Response_reg PF00072.24 EME67633.1 - 0.0025 17.9 0.0 0.0029 17.8 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain Phage_integrase PF00589.22 EME67634.1 - 6.9e-06 26.0 0.0 8.9e-06 25.6 0.0 1.1 1 0 0 1 1 1 1 Phage integrase family NiFeSe_Hases PF00374.19 EME67635.1 - 9.6e-65 219.4 0.0 1.2e-48 166.3 0.0 3.6 2 1 0 2 2 2 2 Nickel-dependent hydrogenase Oxidored_q6 PF01058.22 EME67636.1 - 8.2e-30 103.3 0.0 1.3e-29 102.6 0.0 1.3 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit NiFe_hyd_SSU_C PF14720.6 EME67636.1 - 1.8e-18 66.6 4.3 1.8e-18 66.6 4.3 1.9 2 0 0 2 2 2 1 NiFe/NiFeSe hydrogenase small subunit C-terminal UPF0126 PF03458.13 EME67637.1 - 1.3e-36 124.3 25.9 3.3e-19 68.5 4.8 2.5 2 1 0 2 2 2 2 UPF0126 domain NADH5_C PF06455.11 EME67637.1 - 0.17 11.4 1.6 0.24 11.0 0.6 1.6 1 1 0 1 1 1 0 NADH dehydrogenase subunit 5 C-terminus GGDEF PF00990.21 EME67638.1 - 8.1e-46 155.7 0.0 1.1e-45 155.3 0.0 1.2 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain GGDEF_2 PF17853.1 EME67638.1 - 0.026 14.8 0.3 0.046 14.0 0.3 1.6 1 1 0 1 1 1 0 GGDEF-like domain AAA_16 PF13191.6 EME67638.1 - 0.058 13.8 0.8 0.11 12.9 0.5 1.6 1 1 1 2 2 2 0 AAA ATPase domain Response_reg PF00072.24 EME67639.1 - 1.7e-29 102.2 0.7 3.1e-29 101.4 0.7 1.4 1 0 0 1 1 1 1 Response regulator receiver domain CheX PF13690.6 EME67639.1 - 2.2e-13 50.2 0.0 4.6e-13 49.2 0.0 1.5 1 0 0 1 1 1 1 Chemotaxis phosphatase CheX HATPase_c PF02518.26 EME67641.1 - 1e-21 77.5 0.0 2e-21 76.6 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.12 EME67641.1 - 3.3e-12 46.5 0.0 7.6e-12 45.4 0.0 1.7 1 0 0 1 1 1 1 PAS fold HAMP PF00672.25 EME67641.1 - 7.6e-11 42.2 0.4 2.1e-09 37.6 0.0 3.0 3 0 0 3 3 2 1 HAMP domain PAS_4 PF08448.10 EME67641.1 - 2.8e-09 37.2 0.1 4.9e-09 36.4 0.1 1.5 1 0 0 1 1 1 1 PAS fold PAS PF00989.25 EME67641.1 - 1.1e-08 35.1 0.0 3.5e-08 33.4 0.0 1.8 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.7 EME67641.1 - 4.2e-07 30.2 0.0 7.9e-07 29.3 0.0 1.5 1 0 0 1 1 1 1 PAS domain HisKA PF00512.25 EME67641.1 - 2e-06 27.8 0.5 7.8e-06 25.8 0.1 2.3 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.7 EME67641.1 - 0.019 15.0 0.0 0.051 13.6 0.0 1.8 1 0 0 1 1 1 0 PAS domain HATPase_c_3 PF13589.6 EME67641.1 - 0.024 14.5 0.0 0.048 13.5 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.6 EME67641.1 - 0.057 13.3 0.0 0.2 11.6 0.0 1.9 2 0 0 2 2 2 0 GHKL domain CHASE8 PF17152.4 EME67641.1 - 0.1 12.9 0.0 0.22 11.8 0.0 1.5 1 0 0 1 1 1 0 Periplasmic sensor domain ATPase_gene1 PF09527.10 EME67641.1 - 0.18 12.0 0.6 0.75 10.0 0.1 2.2 2 0 0 2 2 2 0 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter Phosphonate-bd PF12974.7 EME67642.1 - 5.5e-34 117.8 0.0 6.3e-34 117.6 0.0 1.0 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein SBP_bac_3 PF00497.20 EME67642.1 - 4.8e-05 22.9 0.0 0.00013 21.5 0.0 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 PBP_like PF12727.7 EME67642.1 - 0.019 14.1 0.0 0.028 13.5 0.0 1.2 1 0 0 1 1 1 0 PBP superfamily domain FG-GAP PF01839.23 EME67642.1 - 0.026 14.7 0.1 0.067 13.3 0.1 1.8 1 0 0 1 1 1 0 FG-GAP repeat Rtt106_N PF18215.1 EME67642.1 - 0.054 13.3 0.0 0.11 12.3 0.0 1.5 1 0 0 1 1 1 0 Histone chaperone Rtt106 N-terminal domain DUF3987 PF13148.6 EME67644.1 - 1.2e-56 192.3 0.1 1.4e-56 192.1 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3987) DSPc PF00782.20 EME67646.1 - 8e-07 28.9 0.0 1.1e-06 28.5 0.0 1.1 1 0 0 1 1 1 1 Dual specificity phosphatase, catalytic domain DNA_pol3_chi PF04364.13 EME67647.1 - 0.13 12.5 0.0 0.19 11.9 0.0 1.3 1 0 0 1 1 1 0 DNA polymerase III chi subunit, HolC HSP90 PF00183.18 EME67649.1 - 6.5e-123 411.4 0.0 3.4e-120 402.4 0.0 2.0 1 1 1 2 2 2 2 Hsp90 protein HATPase_c_3 PF13589.6 EME67649.1 - 7.6e-11 42.0 0.0 1.4e-10 41.2 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.26 EME67649.1 - 5.9e-09 36.4 0.0 1e-08 35.7 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Ribosomal_S30AE PF02482.19 EME67650.1 - 3.6e-16 59.7 0.6 4.3e-16 59.5 0.6 1.1 1 0 0 1 1 1 1 Sigma 54 modulation protein / S30EA ribosomal protein DUF4478 PF14793.6 EME67650.1 - 0.038 13.9 0.1 0.046 13.6 0.1 1.1 1 0 0 1 1 1 0 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases DUF4795 PF16043.5 EME67650.1 - 0.039 13.6 0.0 0.041 13.5 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4795) HTH_1 PF00126.27 EME67651.1 - 4.8e-23 80.9 1.1 2.6e-22 78.5 0.2 2.3 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family LysR_substrate PF03466.20 EME67651.1 - 1.2e-16 60.7 0.9 2.4e-16 59.7 0.9 1.5 1 1 0 1 1 1 1 LysR substrate binding domain HTH_30 PF13556.6 EME67651.1 - 0.0022 17.7 0.0 0.0044 16.8 0.0 1.5 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain HTH_20 PF12840.7 EME67651.1 - 0.023 14.7 1.4 0.11 12.5 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_24 PF13412.6 EME67651.1 - 0.069 12.7 0.0 0.13 11.8 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 EME67651.1 - 0.1 12.4 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 EME67651.1 - 0.13 12.3 0.0 0.31 11.0 0.0 1.6 1 0 0 1 1 1 0 HTH domain ABC_tran PF00005.27 EME67654.1 - 5.9e-30 104.6 0.0 8.2e-30 104.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 EME67654.1 - 4.5e-10 39.8 0.0 0.00015 21.7 0.1 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 EME67654.1 - 1.3e-08 34.6 0.1 2.7e-06 27.0 0.1 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.6 EME67654.1 - 0.0012 19.0 0.2 0.033 14.4 0.2 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.6 EME67654.1 - 0.0014 18.3 0.1 0.0026 17.5 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain NACHT PF05729.12 EME67654.1 - 0.0031 17.4 0.1 0.031 14.2 0.0 2.1 2 0 0 2 2 2 1 NACHT domain AAA_30 PF13604.6 EME67654.1 - 0.0061 16.3 1.1 0.02 14.6 1.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 EME67654.1 - 0.014 15.6 0.8 2.4 8.3 0.2 2.3 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.6 EME67654.1 - 0.02 15.2 0.2 0.071 13.4 0.2 1.8 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 EME67654.1 - 0.021 14.4 0.8 0.043 13.4 0.8 1.9 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 EME67654.1 - 0.026 14.9 1.4 0.044 14.2 1.3 1.5 1 1 0 1 1 1 0 AAA ATPase domain DUF3584 PF12128.8 EME67654.1 - 0.061 10.8 0.0 0.083 10.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) FtsK_SpoIIIE PF01580.18 EME67654.1 - 0.068 12.5 0.1 0.13 11.6 0.1 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family DinB_2 PF12867.7 EME67654.1 - 0.072 13.6 1.5 1.3 9.6 0.3 2.9 2 1 0 2 2 2 0 DinB superfamily DLIC PF05783.11 EME67654.1 - 0.077 11.8 0.0 0.11 11.3 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) AAA_28 PF13521.6 EME67654.1 - 0.11 12.7 0.6 0.23 11.7 0.2 1.8 2 1 0 2 2 1 0 AAA domain AAA_23 PF13476.6 EME67654.1 - 0.12 12.9 0.0 0.18 12.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain TrwB_AAD_bind PF10412.9 EME67654.1 - 0.15 11.0 0.0 0.17 10.7 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain G-alpha PF00503.20 EME67654.1 - 0.25 10.5 0.0 0.33 10.1 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit AAA_15 PF13175.6 EME67654.1 - 0.35 10.5 0.0 0.43 10.2 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain DNA_gyraseB PF00204.25 EME67655.1 - 2.2e-54 183.6 0.0 3.4e-54 182.9 0.0 1.3 1 0 0 1 1 1 1 DNA gyrase B DNA_gyraseB_C PF00986.21 EME67655.1 - 3.1e-29 100.9 0.0 8.7e-29 99.5 0.0 1.8 1 0 0 1 1 1 1 DNA gyrase B subunit, carboxyl terminus HATPase_c PF02518.26 EME67655.1 - 2.9e-19 69.6 0.0 5.4e-19 68.8 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Toprim PF01751.22 EME67655.1 - 8.1e-18 64.6 0.0 2.7e-17 62.9 0.0 2.0 2 0 0 2 2 2 1 Toprim domain GyrB_insert PF18053.1 EME67655.1 - 3.4e-05 23.8 0.0 9.1e-05 22.4 0.1 1.6 1 1 0 1 1 1 1 DNA gyrase B subunit insert domain Toprim_4 PF13662.6 EME67655.1 - 0.14 12.7 0.0 0.64 10.5 0.0 2.1 1 0 0 1 1 1 0 Toprim domain HCV_NS5a_1a PF08300.13 EME67655.1 - 0.15 12.2 0.0 0.34 11.1 0.0 1.5 1 0 0 1 1 1 0 Hepatitis C virus non-structural 5a zinc finger domain SMC_N PF02463.19 EME67656.1 - 5.2e-17 62.0 0.0 7.4e-17 61.5 0.0 1.2 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 EME67656.1 - 3e-09 37.1 0.0 3.3e-06 27.1 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 EME67656.1 - 1.1e-06 29.3 0.0 1.4e-06 29.0 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 EME67656.1 - 2.3e-05 24.3 0.0 4.7e-05 23.3 0.0 1.4 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 EME67656.1 - 0.0011 18.7 0.0 0.0019 17.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_28 PF13521.6 EME67656.1 - 0.031 14.5 0.0 0.09 13.0 0.0 1.8 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 EME67656.1 - 0.032 14.7 0.2 0.14 12.6 0.0 2.0 2 1 0 2 2 2 0 ABC transporter AAA_27 PF13514.6 EME67656.1 - 0.035 13.7 0.0 0.4 10.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.6 EME67656.1 - 0.077 13.2 0.0 0.17 12.1 0.0 1.5 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_5 PF07728.14 EME67656.1 - 0.18 11.8 0.0 0.48 10.4 0.0 1.8 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) DNA_pol3_beta PF00712.19 EME67657.1 - 4.8e-39 133.2 0.0 2.1e-33 115.0 0.0 3.2 3 0 0 3 3 3 3 DNA polymerase III beta subunit, N-terminal domain DNA_pol3_beta_2 PF02767.16 EME67657.1 - 2.4e-37 127.7 0.1 2e-32 111.8 0.0 2.8 3 0 0 3 3 3 2 DNA polymerase III beta subunit, central domain DNA_pol3_beta_3 PF02768.15 EME67657.1 - 7.7e-36 122.6 0.3 1.6e-33 115.1 0.0 2.6 2 0 0 2 2 2 2 DNA polymerase III beta subunit, C-terminal domain Bac_DnaA PF00308.18 EME67658.1 - 1.3e-78 263.8 0.5 2.2e-78 263.1 0.1 1.6 2 0 0 2 2 2 1 Bacterial dnaA protein Bac_DnaA_C PF08299.11 EME67658.1 - 1.4e-32 111.5 0.8 1.1e-31 108.6 0.5 2.2 2 0 0 2 2 2 1 Bacterial dnaA protein helix-turn-helix IstB_IS21 PF01695.17 EME67658.1 - 4.7e-10 39.5 0.0 9.4e-10 38.5 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA PF00004.29 EME67658.1 - 9.9e-07 29.2 0.1 3.4e-06 27.5 0.0 1.9 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AFG1_ATPase PF03969.16 EME67658.1 - 1.6e-06 27.2 0.7 0.018 13.9 0.2 2.5 1 1 1 2 2 2 2 AFG1-like ATPase AAA_14 PF13173.6 EME67658.1 - 1.4e-05 25.1 0.0 3.6e-05 23.8 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 EME67658.1 - 0.00038 20.7 3.0 0.74 10.1 0.1 3.6 2 2 1 3 3 3 2 AAA domain ATPase_2 PF01637.18 EME67658.1 - 0.002 18.1 0.1 0.0072 16.3 0.0 1.9 2 1 0 2 2 2 1 ATPase domain predominantly from Archaea HIGH_NTase1_ass PF16581.5 EME67658.1 - 0.0029 17.7 0.1 0.0049 16.9 0.1 1.3 1 0 0 1 1 1 1 Cytidyltransferase-related C-terminal region AAA_16 PF13191.6 EME67658.1 - 0.0041 17.5 1.2 0.02 15.3 1.2 2.3 1 1 0 1 1 1 1 AAA ATPase domain NACHT PF05729.12 EME67658.1 - 0.005 16.8 0.1 0.016 15.2 0.0 2.0 2 1 0 2 2 2 1 NACHT domain AAA_19 PF13245.6 EME67658.1 - 0.011 16.1 1.0 0.091 13.1 0.0 2.5 2 2 1 3 3 3 0 AAA domain RNA_helicase PF00910.22 EME67658.1 - 0.016 15.5 0.0 0.051 14.0 0.0 1.9 1 1 0 1 1 1 0 RNA helicase TrwB_AAD_bind PF10412.9 EME67658.1 - 0.016 14.1 0.1 0.047 12.6 0.0 1.7 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain RuvB_N PF05496.12 EME67658.1 - 0.017 14.8 0.1 0.1 12.4 0.1 2.2 1 1 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain TsaE PF02367.17 EME67658.1 - 0.025 14.6 0.0 0.064 13.3 0.0 1.7 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_5 PF07728.14 EME67658.1 - 0.048 13.7 0.3 0.37 10.8 0.0 2.6 2 1 1 3 3 3 0 AAA domain (dynein-related subfamily) HD PF01966.22 EME67659.1 - 2.5e-16 60.0 0.0 3.9e-16 59.4 0.0 1.3 1 0 0 1 1 1 1 HD domain HD_5 PF13487.6 EME67659.1 - 3.2e-14 52.9 0.1 2.1e-13 50.3 0.0 2.1 2 0 0 2 2 2 1 HD domain HDOD PF08668.12 EME67659.1 - 0.018 14.5 0.0 0.03 13.8 0.0 1.3 1 0 0 1 1 1 0 HDOD domain TonB_dep_Rec PF00593.24 EME67660.1 - 3.7e-16 60.1 15.7 4.9e-16 59.7 15.7 1.1 1 0 0 1 1 1 1 TonB dependent receptor DUF5528 PF17666.1 EME67660.1 - 0.07 13.1 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5528) 7TMR-DISMED2 PF07696.11 EME67661.1 - 9.9e-27 93.6 0.0 2.3e-26 92.4 0.0 1.7 1 0 0 1 1 1 1 7TMR-DISM extracellular 2 HATPase_c PF02518.26 EME67661.1 - 8.2e-24 84.3 0.0 1.5e-23 83.5 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 7TMR-DISM_7TM PF07695.11 EME67661.1 - 6.3e-23 81.7 11.9 1.1e-22 80.9 11.9 1.4 1 0 0 1 1 1 1 7TM diverse intracellular signalling HisKA PF00512.25 EME67661.1 - 2.2e-09 37.2 0.2 2.2e-09 37.2 0.2 2.6 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS PF00989.25 EME67661.1 - 4.8e-08 33.0 0.0 1.1e-07 31.8 0.0 1.6 1 0 0 1 1 1 1 PAS fold HATPase_c_2 PF13581.6 EME67661.1 - 1e-05 25.5 0.0 2.8e-05 24.0 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_4 PF08448.10 EME67661.1 - 0.00014 22.1 0.7 0.00075 19.7 0.0 2.5 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.7 EME67661.1 - 0.0093 16.2 0.0 0.048 13.9 0.0 2.1 2 0 0 2 2 2 1 PAS domain Response_reg PF00072.24 EME67662.1 - 2.8e-22 79.0 0.0 3.8e-22 78.6 0.0 1.2 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 EME67662.1 - 8e-15 54.7 0.0 2.6e-14 53.1 0.0 1.8 2 0 0 2 2 2 1 Transcriptional regulatory protein, C terminal MarR_2 PF12802.7 EME67662.1 - 0.037 13.9 0.1 0.14 12.1 0.0 2.0 2 0 0 2 2 2 0 MarR family TetR_N PF00440.23 EME67663.1 - 4.5e-11 42.4 0.0 8.9e-11 41.4 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_24 PF17932.1 EME67663.1 - 5.4e-08 33.1 0.1 1.1e-07 32.1 0.0 1.6 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain Mga PF05043.13 EME67663.1 - 0.038 14.6 0.0 0.62 10.7 0.0 2.2 1 1 0 1 1 1 0 Mga helix-turn-helix domain HTH_Tnp_1_2 PF13022.6 EME67663.1 - 0.042 14.0 0.0 0.058 13.6 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase NleF_casp_inhib PF16809.5 EME67663.1 - 0.11 12.4 0.0 0.14 12.1 0.0 1.1 1 0 0 1 1 1 0 NleF caspase inhibitor ZnuA PF01297.17 EME67663.1 - 0.2 11.1 0.0 0.3 10.5 0.0 1.3 1 1 0 1 1 1 0 Zinc-uptake complex component A periplasmic MCR PF18509.1 EME67665.1 - 9.5e-17 60.3 16.2 1.2e-09 37.5 4.3 2.2 2 0 0 2 2 2 2 Magnetochrome domain Paired_CXXCH_1 PF09699.10 EME67665.1 - 0.011 15.5 1.3 1.7 8.5 0.0 2.3 2 0 0 2 2 2 0 Doubled CXXCH motif (Paired_CXXCH_1) DAGK_cat PF00781.24 EME67666.1 - 4.1e-14 52.3 0.1 5.4e-14 51.9 0.1 1.2 1 0 0 1 1 1 1 Diacylglycerol kinase catalytic domain Cation_efflux PF01545.21 EME67667.1 - 8.8e-38 130.0 14.6 1.1e-37 129.7 14.6 1.1 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 EME67667.1 - 1.6e-10 40.9 0.4 2.6e-10 40.3 0.4 1.4 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter DUF150 PF02576.17 EME67667.1 - 0.018 15.5 0.0 0.032 14.6 0.0 1.4 1 0 0 1 1 1 0 RimP N-terminal domain Dynein_attach_N PF15867.5 EME67667.1 - 0.14 12.2 0.1 0.62 10.1 0.1 1.9 1 1 0 1 1 1 0 Dynein attachment factor N-terminus Phage_holin_2_4 PF16082.5 EME67667.1 - 0.45 10.3 7.0 0.23 11.2 3.9 2.1 2 0 0 2 2 2 0 Bacteriophage holin family, superfamily II-like TMEM40 PF15817.5 EME67669.1 - 0.076 12.8 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 Transmembrane protein 40 family DUF2207 PF09972.9 EME67670.1 - 6.1 5.5 4.9 7.2 5.2 4.9 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Pentapeptide PF00805.22 EME67671.1 - 2e-39 132.8 55.3 1.3e-10 40.7 3.9 5.6 1 1 5 6 6 6 6 Pentapeptide repeats (8 copies) Pentapeptide_3 PF13576.6 EME67671.1 - 8.3e-18 64.3 0.1 1.5e-06 28.2 0.4 4.0 2 2 2 4 4 4 3 Pentapeptide repeats (9 copies) Pentapeptide_4 PF13599.6 EME67671.1 - 7.9e-15 54.8 0.0 4.9e-07 29.8 0.0 2.9 1 1 1 2 2 2 2 Pentapeptide repeats (9 copies) DivIC PF04977.15 EME67672.1 - 0.0034 17.1 0.3 0.0035 17.1 0.3 1.1 1 0 0 1 1 1 1 Septum formation initiator Dynamitin PF04912.14 EME67672.1 - 0.0086 15.4 0.1 0.0087 15.4 0.1 1.1 1 0 0 1 1 1 1 Dynamitin ABC_tran_CTD PF16326.5 EME67672.1 - 0.024 14.8 2.1 0.032 14.5 2.1 1.5 1 1 0 1 1 1 0 ABC transporter C-terminal domain GreA_GreB_N PF03449.15 EME67672.1 - 0.028 14.6 1.3 0.048 13.8 0.6 1.7 1 1 0 1 1 1 0 Transcription elongation factor, N-terminal MerR-DNA-bind PF09278.11 EME67672.1 - 0.037 14.6 1.8 0.059 13.9 1.8 1.4 1 0 0 1 1 1 0 MerR, DNA binding DUF4230 PF14014.6 EME67673.1 - 0.041 14.2 0.4 0.06 13.6 0.4 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF4230) CAP_N PF01213.19 EME67673.1 - 0.058 12.9 7.8 0.065 12.7 7.8 1.2 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal Mito_fiss_reg PF05308.11 EME67673.1 - 0.11 12.6 3.1 0.12 12.5 3.1 1.1 1 0 0 1 1 1 0 Mitochondrial fission regulator PRIMA1 PF16101.5 EME67673.1 - 0.12 12.5 7.3 0.14 12.2 7.3 1.2 1 0 0 1 1 1 0 Proline-rich membrane anchor 1 DEC-1_N PF04625.13 EME67673.1 - 0.13 11.2 9.7 0.14 11.1 9.7 1.1 1 0 0 1 1 1 0 DEC-1 protein, N-terminal region Trypsin_2 PF13365.6 EME67674.1 - 3.2e-30 106.0 2.1 6.5e-30 105.0 2.1 1.6 1 0 0 1 1 1 1 Trypsin-like peptidase domain MCR PF18509.1 EME67674.1 - 1.5e-29 101.2 17.6 4.5e-15 54.9 3.9 2.6 2 0 0 2 2 2 2 Magnetochrome domain Trypsin PF00089.26 EME67674.1 - 7.9e-13 48.7 0.1 1.4e-12 47.9 0.1 1.4 1 0 0 1 1 1 1 Trypsin PDZ_6 PF17820.1 EME67674.1 - 1.7e-10 40.6 0.2 4.3e-10 39.3 0.2 1.8 1 0 0 1 1 1 1 PDZ domain PDZ_2 PF13180.6 EME67674.1 - 2.2e-10 40.7 0.0 6.4e-10 39.2 0.0 1.8 1 0 0 1 1 1 1 PDZ domain PDZ PF00595.24 EME67674.1 - 2e-08 34.4 0.4 8.1e-08 32.5 0.0 2.2 2 0 0 2 2 2 1 PDZ domain Peptidase_S55 PF05580.12 EME67674.1 - 0.0038 17.2 1.1 0.011 15.7 0.7 1.8 2 0 0 2 2 2 1 SpoIVB peptidase S55 PDZ_1 PF12812.7 EME67674.1 - 0.008 16.2 0.0 0.03 14.3 0.0 1.9 2 0 0 2 2 2 1 PDZ-like domain Peptidase_S46 PF10459.9 EME67674.1 - 0.008 14.9 1.9 0.23 10.1 0.1 2.0 2 0 0 2 2 2 1 Peptidase S46 Peptidase_S29 PF02907.15 EME67674.1 - 0.017 14.9 0.1 0.04 13.6 0.1 1.6 1 0 0 1 1 1 0 Hepatitis C virus NS3 protease Cytochrome_CBB3 PF13442.6 EME67674.1 - 0.031 14.6 2.6 1.8 8.9 0.5 2.7 2 0 0 2 2 2 0 Cytochrome C oxidase, cbb3-type, subunit III Cytochrome_C7 PF14522.6 EME67674.1 - 0.45 10.6 2.3 3.6 7.7 2.8 1.9 1 1 1 2 2 2 0 Cytochrome c7 and related cytochrome c Cytochrom_C PF00034.21 EME67674.1 - 1.4 10.1 8.4 8.4 7.6 2.2 2.4 1 1 1 2 2 2 0 Cytochrome c Cytochrom_c3_2 PF14537.6 EME67674.1 - 1.6 9.3 5.1 9.4 6.8 5.1 1.9 1 1 0 1 1 1 0 Cytochrome c3 PSCyt3 PF07627.11 EME67674.1 - 1.8 8.9 6.0 5.1 7.4 0.7 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1588) SPESP1 PF15754.5 EME67675.1 - 0.18 10.9 7.3 0.25 10.5 7.3 1.2 1 0 0 1 1 1 0 Sperm equatorial segment protein 1 Trypsin_2 PF13365.6 EME67676.1 - 1.3e-16 61.9 0.9 1.9e-16 61.3 0.9 1.3 1 0 0 1 1 1 1 Trypsin-like peptidase domain Trypsin PF00089.26 EME67676.1 - 0.011 15.5 0.7 0.25 11.1 0.7 2.2 1 1 0 1 1 1 0 Trypsin ChaC PF04752.12 EME67677.1 - 1.1e-47 162.4 0.0 1.2e-47 162.2 0.0 1.0 1 0 0 1 1 1 1 ChaC-like protein GGACT PF06094.12 EME67677.1 - 9.7e-06 26.2 0.1 1.4e-05 25.6 0.1 1.2 1 0 0 1 1 1 1 Gamma-glutamyl cyclotransferase, AIG2-like Cache_3-Cache_2 PF17201.4 EME67677.1 - 0.015 14.6 0.1 0.02 14.2 0.1 1.1 1 0 0 1 1 1 0 Cache 3/Cache 2 fusion domain AIG2_2 PF13772.6 EME67677.1 - 0.1 13.0 0.0 0.16 12.3 0.0 1.2 1 0 0 1 1 1 0 AIG2-like family Nitroreductase PF00881.24 EME67678.1 - 3.1e-28 98.9 0.0 5.2e-28 98.2 0.0 1.4 1 1 0 1 1 1 1 Nitroreductase family HATPase_c PF02518.26 EME67679.1 - 2e-21 76.6 0.0 4.2e-21 75.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 EME67679.1 - 1.4e-09 37.9 0.5 6.7e-09 35.7 0.0 2.3 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain CCDC144C PF14915.6 EME67679.1 - 0.08 12.1 0.1 0.14 11.3 0.1 1.3 1 0 0 1 1 1 0 CCDC144C protein coiled-coil region Methyltransf_25 PF13649.6 EME67680.1 - 8.5e-09 36.0 0.0 1.4e-08 35.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 EME67680.1 - 5.8e-07 30.1 0.0 8.6e-07 29.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain TPMT PF05724.11 EME67680.1 - 2.5e-06 27.3 0.1 7.4e-06 25.8 0.1 1.7 1 1 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) Methyltransf_12 PF08242.12 EME67680.1 - 9.1e-06 26.3 0.0 1.7e-05 25.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 EME67680.1 - 0.00011 22.0 0.0 0.00013 21.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_2 PF00891.18 EME67680.1 - 0.012 14.9 0.1 0.016 14.5 0.1 1.1 1 0 0 1 1 1 0 O-methyltransferase domain ILVD_EDD PF00920.21 EME67680.1 - 0.13 10.8 0.0 0.16 10.6 0.0 1.0 1 0 0 1 1 1 0 Dehydratase family Methyltransf_23 PF13489.6 EME67680.1 - 0.19 11.6 0.0 0.23 11.3 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain DAHP_synth_2 PF01474.16 EME67681.1 - 2.6e-207 688.6 0.0 2.9e-207 688.4 0.0 1.0 1 0 0 1 1 1 1 Class-II DAHP synthetase family Tsi6 PF18660.1 EME67681.1 - 0.039 14.0 0.0 0.089 12.8 0.0 1.5 1 0 0 1 1 1 0 Tsi6 MaoC_dehydratas PF01575.19 EME67682.1 - 6.3e-16 58.1 0.0 8.3e-16 57.7 0.0 1.2 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 EME67682.1 - 0.00061 19.9 0.0 0.0012 18.9 0.0 1.5 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase FabA PF07977.13 EME67682.1 - 0.023 14.3 0.0 0.027 14.1 0.0 1.3 1 0 0 1 1 1 0 FabA-like domain sCache_2 PF17200.4 EME67683.1 - 7.2e-40 136.4 0.0 1.5e-39 135.3 0.0 1.6 2 0 0 2 2 2 1 Single Cache domain 2 dCache_2 PF08269.11 EME67683.1 - 5.4e-36 124.3 0.0 3.6e-35 121.6 0.0 2.1 2 1 1 3 3 3 1 Cache domain HAMP PF00672.25 EME67683.1 - 2.7e-10 40.4 0.7 1.2e-09 38.4 0.7 2.1 1 0 0 1 1 1 1 HAMP domain Cache_3-Cache_2 PF17201.4 EME67683.1 - 1.2e-09 37.9 0.1 4.1e-09 36.1 0.0 2.0 3 0 0 3 3 3 1 Cache 3/Cache 2 fusion domain DUF416 PF04222.12 EME67683.1 - 0.041 13.3 0.0 0.085 12.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF416) Tnp_22_dsRBD PF17490.2 EME67683.1 - 0.043 13.8 0.0 0.088 12.8 0.0 1.5 1 0 0 1 1 1 0 L1 transposable element dsRBD-like domain DUF647 PF04884.14 EME67683.1 - 1.2 8.7 5.7 1.2 8.7 0.3 2.3 2 1 0 2 2 2 0 Vitamin B6 photo-protection and homoeostasis TPR_MLP1_2 PF07926.12 EME67683.1 - 2.2 8.3 9.9 0.23 11.5 5.0 1.7 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein MCPsignal PF00015.21 EME67685.1 - 2.4e-30 105.6 51.4 3.6e-29 101.8 29.9 3.3 1 1 2 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF948 PF06103.11 EME67685.1 - 2e-06 27.9 25.4 0.0013 19.0 2.5 5.2 1 1 4 5 5 5 2 Bacterial protein of unknown function (DUF948) DUF1664 PF07889.12 EME67685.1 - 0.01 15.9 16.4 1.1 9.3 4.8 4.1 2 2 2 4 4 4 0 Protein of unknown function (DUF1664) Syntaxin_2 PF14523.6 EME67685.1 - 0.044 14.2 3.3 0.68 10.3 1.0 3.3 4 2 0 4 4 2 0 Syntaxin-like protein Tubulin_C PF03953.17 EME67685.1 - 0.05 13.8 0.5 0.15 12.2 0.0 2.1 2 1 0 2 2 2 0 Tubulin C-terminal domain TMPIT PF07851.13 EME67685.1 - 0.07 12.4 1.9 1.5 8.0 0.3 2.3 2 0 0 2 2 2 0 TMPIT-like protein HAP1_N PF04849.13 EME67685.1 - 0.08 12.1 0.2 0.08 12.1 0.2 2.0 3 0 0 3 3 3 0 HAP1 N-terminal conserved region PhaP_Bmeg PF09602.10 EME67685.1 - 0.094 12.6 4.4 2.1 8.3 0.3 2.9 2 2 1 3 3 3 0 Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg) Spc7 PF08317.11 EME67685.1 - 0.095 11.6 7.8 1.5 7.6 0.4 2.3 2 0 0 2 2 2 0 Spc7 kinetochore protein COG5 PF10392.9 EME67685.1 - 0.1 12.8 7.3 0.19 11.9 0.2 2.7 2 1 0 2 2 2 0 Golgi transport complex subunit 5 Laminin_II PF06009.12 EME67685.1 - 0.22 11.5 27.4 1.3 9.0 3.3 4.1 1 1 4 5 5 5 0 Laminin Domain II Kre28 PF17097.5 EME67685.1 - 0.34 9.8 4.0 0.16 10.9 1.2 1.7 2 0 0 2 2 2 0 Spindle pole body component Nup54 PF13874.6 EME67685.1 - 0.76 9.9 14.9 0.74 9.9 1.3 2.9 2 2 0 2 2 2 0 Nucleoporin complex subunit 54 DUF3450 PF11932.8 EME67685.1 - 0.91 8.8 24.4 0.99 8.7 2.2 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF3450) IFT57 PF10498.9 EME67685.1 - 2 7.3 9.9 0.48 9.3 2.5 2.8 2 1 1 3 3 3 0 Intra-flagellar transport protein 57 DUF241 PF03087.14 EME67685.1 - 2.1 8.2 9.1 2.9 7.7 1.4 2.2 2 0 0 2 2 2 0 Arabidopsis protein of unknown function DUF2203 PF09969.9 EME67685.1 - 2.4 8.9 16.0 1.5 9.5 0.6 3.5 1 1 0 2 2 2 0 Uncharacterized conserved protein (DUF2203) Plk4_PB2 PF18409.1 EME67685.1 - 2.4 8.9 5.8 4.4 8.0 0.6 2.8 2 1 1 3 3 3 0 Polo-like Kinase 4 Polo Box 2 DUF4200 PF13863.6 EME67685.1 - 2.4 8.6 5.0 15 6.0 1.3 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF4200) SLS PF14611.6 EME67685.1 - 3.3 7.5 9.6 5.1 6.9 0.7 2.6 2 1 0 2 2 2 0 Mitochondrial inner-membrane-bound regulator V_ATPase_I PF01496.19 EME67685.1 - 3.9 5.3 7.8 3.6 5.4 1.9 2.0 1 1 0 2 2 2 0 V-type ATPase 116kDa subunit family DUF3540 PF12059.8 EME67685.1 - 6.2 6.6 28.6 0.36 10.6 8.9 3.1 1 1 1 3 3 3 0 Protein of unknown function (DUF3540) DUF2935 PF11155.8 EME67685.1 - 6.3 7.2 5.5 1.2e+02 3.0 5.5 2.9 1 1 0 1 1 1 0 Domain of unknown function (DUF2935) Fib_alpha PF08702.10 EME67685.1 - 9.9 6.3 8.4 38 4.5 1.7 3.3 2 2 2 4 4 4 0 Fibrinogen alpha/beta chain family PAS_3 PF08447.12 EME67686.1 - 2e-10 40.8 0.0 4e-10 39.8 0.0 1.5 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.7 EME67686.1 - 4.5e-09 36.5 0.0 6.6e-09 36.0 0.0 1.2 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.10 EME67686.1 - 1.6e-06 28.3 0.0 3e-06 27.4 0.0 1.4 1 0 0 1 1 1 1 PAS fold PAS PF00989.25 EME67686.1 - 3.4e-06 27.0 0.0 6.2e-06 26.2 0.0 1.4 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 EME67686.1 - 0.019 15.0 0.0 0.047 13.7 0.0 1.8 1 0 0 1 1 1 0 PAS domain DUF5596 PF18082.1 EME67686.1 - 0.16 11.8 0.0 0.27 11.1 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF5596) Response_reg PF00072.24 EME67687.1 - 2.5e-06 27.6 0.0 3.7e-06 27.1 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain Hpt PF01627.23 EME67687.1 - 3e-05 24.2 0.0 5.5e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 Hpt domain GGDEF PF00990.21 EME67689.1 - 7.6e-49 165.6 0.0 1.2e-48 164.9 0.0 1.3 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain PAS_9 PF13426.7 EME67689.1 - 3e-20 72.4 0.0 1.5e-13 50.9 0.0 2.4 2 0 0 2 2 2 2 PAS domain PAS PF00989.25 EME67689.1 - 7.7e-17 61.3 0.1 2.1e-11 43.8 0.0 2.5 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.7 EME67689.1 - 8.2e-13 48.1 0.1 9.7e-07 28.7 0.0 2.6 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.10 EME67689.1 - 4.1e-08 33.4 0.0 1.1e-06 28.9 0.0 2.7 2 1 0 2 2 2 1 PAS fold PAS_7 PF12860.7 EME67689.1 - 0.0054 16.9 0.4 0.033 14.3 0.1 2.4 2 1 0 2 2 2 1 PAS fold PAS_10 PF13596.6 EME67689.1 - 0.0056 17.3 0.0 0.015 15.9 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS_3 PF08447.12 EME67689.1 - 0.0072 16.6 0.0 1 9.7 0.0 2.6 2 0 0 2 2 2 1 PAS fold GCH_III PF05165.12 EME67689.1 - 0.046 13.0 0.0 0.073 12.3 0.0 1.2 1 0 0 1 1 1 0 GTP cyclohydrolase III Pox_A_type_inc PF04508.12 EME67692.1 - 0.09 12.7 1.2 0.25 11.3 1.2 1.8 1 0 0 1 1 1 0 Viral A-type inclusion protein repeat LPD23 PF18838.1 EME67693.1 - 0.028 14.2 0.3 0.1 12.4 0.0 1.9 1 1 1 2 2 2 0 Large polyvalent protein associated domain 23 Fusion_gly PF00523.18 EME67694.1 - 0.14 10.4 0.0 0.21 9.8 0.0 1.1 1 0 0 1 1 1 0 Fusion glycoprotein F0 KfrA_N PF11740.8 EME67694.1 - 1.2 9.8 8.9 16 6.2 3.5 2.8 3 0 0 3 3 3 0 Plasmid replication region DNA-binding N-term DNA_pol_phi PF04931.13 EME67694.1 - 5.2 5.1 14.7 8.4 4.4 14.7 1.2 1 0 0 1 1 1 0 DNA polymerase phi EAL PF00563.20 EME67697.1 - 8.7e-45 153.1 0.1 1.1e-44 152.8 0.1 1.0 1 0 0 1 1 1 1 EAL domain DUF1465 PF07323.12 EME67698.1 - 4.6e-23 81.8 1.7 5.2e-23 81.6 1.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1465) Gp49 PF05973.14 EME67699.1 - 5.7e-26 90.5 0.1 6.6e-26 90.3 0.1 1.0 1 0 0 1 1 1 1 Phage derived protein Gp49-like (DUF891) HTH_3 PF01381.22 EME67700.1 - 3.2e-12 46.3 0.3 5.1e-12 45.7 0.3 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 EME67700.1 - 7.4e-12 45.4 4.3 9.7e-12 45.1 4.3 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.6 EME67700.1 - 1.2e-07 31.6 0.1 1.5e-07 31.2 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 EME67700.1 - 1.9e-06 27.8 0.0 3.1e-06 27.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 EME67700.1 - 0.0002 21.2 0.2 0.00028 20.7 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.6 EME67700.1 - 0.0012 18.6 0.2 0.0022 17.7 0.1 1.5 1 1 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 EME67700.1 - 0.0035 16.8 0.3 0.0057 16.1 0.3 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 MqsA_antitoxin PF15731.5 EME67700.1 - 0.015 15.4 0.0 0.015 15.4 0.0 1.1 1 0 0 1 1 1 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA DUF3071 PF11268.8 EME67700.1 - 0.025 14.6 0.1 0.031 14.4 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3071) HTH_23 PF13384.6 EME67700.1 - 0.045 13.6 0.1 0.081 12.7 0.1 1.4 1 0 0 1 1 1 0 Homeodomain-like domain Pou PF00157.17 EME67700.1 - 0.047 13.7 0.2 0.075 13.0 0.2 1.4 1 1 0 1 1 1 0 Pou domain - N-terminal to homeobox domain Sigma70_r4_2 PF08281.12 EME67700.1 - 0.073 12.8 0.1 0.13 12.0 0.1 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_24 PF13412.6 EME67700.1 - 0.099 12.2 0.1 0.16 11.6 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_26 PF13443.6 EME67700.1 - 0.12 12.8 0.1 0.18 12.3 0.1 1.3 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain FUR PF01475.19 EME67701.1 - 1.9e-36 124.8 0.4 2.2e-36 124.6 0.4 1.0 1 0 0 1 1 1 1 Ferric uptake regulator family RepL PF05732.11 EME67701.1 - 0.0021 17.5 0.0 0.31 10.5 0.0 2.1 2 0 0 2 2 2 2 Firmicute plasmid replication protein (RepL) HTH_23 PF13384.6 EME67701.1 - 0.044 13.6 0.7 0.11 12.4 0.1 2.0 2 0 0 2 2 2 0 Homeodomain-like domain HTH_29 PF13551.6 EME67701.1 - 0.06 13.4 0.0 0.12 12.4 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn helix HTH_20 PF12840.7 EME67701.1 - 0.094 12.8 0.0 0.19 11.8 0.0 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain VbhA PF18495.1 EME67702.1 - 0.022 14.6 0.1 0.063 13.2 0.0 1.8 2 0 0 2 2 2 0 Antitoxin VbhA Peptidase_C14 PF00656.22 EME67703.1 - 1.3e-15 58.0 0.0 2.8e-15 56.9 0.0 1.5 1 0 0 1 1 1 1 Caspase domain LPP20 PF02169.16 EME67705.1 - 0.00037 20.8 0.5 0.00082 19.7 0.0 1.9 2 0 0 2 2 2 1 LPP20 lipoprotein TPR_2 PF07719.17 EME67706.1 - 3.4e-15 54.9 14.4 0.0011 19.0 0.0 5.3 4 1 1 5 5 5 5 Tetratricopeptide repeat TPR_16 PF13432.6 EME67706.1 - 4.8e-11 43.1 26.4 5.5e-07 30.1 3.5 4.2 2 2 1 3 3 3 3 Tetratricopeptide repeat TPR_1 PF00515.28 EME67706.1 - 9.3e-11 41.1 7.5 0.0041 16.9 0.9 5.1 4 1 1 5 5 5 3 Tetratricopeptide repeat TPR_19 PF14559.6 EME67706.1 - 4.9e-10 39.8 12.6 0.00031 21.2 2.4 3.7 2 1 1 3 3 3 2 Tetratricopeptide repeat TPR_14 PF13428.6 EME67706.1 - 1.7e-08 34.6 18.6 0.0028 18.4 0.7 5.1 1 1 2 4 4 4 3 Tetratricopeptide repeat TPR_11 PF13414.6 EME67706.1 - 8.6e-08 31.7 6.7 0.0021 17.7 0.3 4.3 2 1 2 4 4 4 3 TPR repeat TPR_17 PF13431.6 EME67706.1 - 1.6e-06 28.1 8.6 0.59 10.6 0.1 4.5 3 1 1 4 4 4 3 Tetratricopeptide repeat TPR_8 PF13181.6 EME67706.1 - 2.2e-06 27.4 7.0 0.12 12.7 0.0 4.0 5 0 0 5 5 4 2 Tetratricopeptide repeat ANAPC3 PF12895.7 EME67706.1 - 3.2e-05 24.1 1.4 0.0086 16.3 0.3 2.4 2 0 0 2 2 2 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_9 PF13371.6 EME67706.1 - 4.4e-05 23.6 6.2 0.03 14.5 0.7 3.2 1 1 1 2 2 2 2 Tetratricopeptide repeat DUF799 PF05643.11 EME67706.1 - 0.0012 18.5 0.0 0.0023 17.5 0.0 1.4 1 0 0 1 1 1 1 Putative bacterial lipoprotein (DUF799) TPR_12 PF13424.6 EME67706.1 - 0.0013 19.0 11.9 0.033 14.5 3.2 3.5 2 1 1 3 3 3 2 Tetratricopeptide repeat NARP1 PF12569.8 EME67706.1 - 0.003 16.5 0.0 0.078 11.9 0.0 2.1 1 1 1 2 2 2 1 NMDA receptor-regulated protein 1 HemY_N PF07219.13 EME67706.1 - 0.013 15.7 7.4 0.034 14.4 2.9 2.8 2 0 0 2 2 2 0 HemY protein N-terminus TPR_6 PF13174.6 EME67706.1 - 0.058 14.0 10.9 0.32 11.7 1.2 4.2 4 1 0 4 4 4 0 Tetratricopeptide repeat TPR_4 PF07721.14 EME67706.1 - 2.2 9.2 22.0 5 8.1 0.7 5.1 4 0 0 4 4 4 0 Tetratricopeptide repeat DUF4384 PF14326.6 EME67707.1 - 1.2e-07 31.8 0.0 2.5e-07 30.7 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4384) Trypsin_2 PF13365.6 EME67708.1 - 5.8e-20 72.7 0.8 5.8e-20 72.7 0.8 1.8 2 0 0 2 2 2 1 Trypsin-like peptidase domain Trypsin PF00089.26 EME67708.1 - 7.9e-08 32.4 0.0 1.3e-07 31.6 0.0 1.3 1 0 0 1 1 1 1 Trypsin TPR_19 PF14559.6 EME67708.1 - 4.7e-07 30.2 13.1 0.0011 19.5 3.0 4.1 1 1 3 5 5 5 3 Tetratricopeptide repeat TPR_14 PF13428.6 EME67708.1 - 2.2e-05 24.9 28.5 0.013 16.3 4.7 6.3 4 2 3 7 7 7 3 Tetratricopeptide repeat TPR_16 PF13432.6 EME67708.1 - 0.0011 19.6 4.3 0.0011 19.6 4.3 4.9 3 2 2 5 5 5 2 Tetratricopeptide repeat TPR_2 PF07719.17 EME67708.1 - 0.0024 17.9 10.6 0.4 10.9 0.8 4.6 5 0 0 5 5 5 2 Tetratricopeptide repeat ANAPC3 PF12895.7 EME67708.1 - 0.0033 17.6 0.0 0.26 11.5 0.0 2.5 2 0 0 2 2 2 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_7 PF13176.6 EME67708.1 - 0.0061 16.5 2.3 3.8 7.7 0.0 4.2 3 1 0 3 3 3 1 Tetratricopeptide repeat Peptidase_S46 PF10459.9 EME67708.1 - 0.014 14.1 0.1 0.023 13.4 0.1 1.2 1 0 0 1 1 1 0 Peptidase S46 TPR_8 PF13181.6 EME67708.1 - 0.045 14.0 0.4 24 5.4 0.1 3.8 4 0 0 4 4 3 0 Tetratricopeptide repeat TPR_6 PF13174.6 EME67708.1 - 0.052 14.2 10.7 23 5.9 0.5 5.4 5 0 0 5 5 5 0 Tetratricopeptide repeat TPR_1 PF00515.28 EME67708.1 - 0.13 12.1 2.9 9.1 6.3 0.0 3.0 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_12 PF13424.6 EME67708.1 - 0.14 12.5 0.1 0.14 12.5 0.1 4.0 4 2 0 4 4 3 0 Tetratricopeptide repeat TPR_20 PF14561.6 EME67708.1 - 0.61 10.4 6.1 9.7 6.6 2.2 3.0 2 1 0 2 2 2 0 Tetratricopeptide repeat TPR_21 PF09976.9 EME67708.1 - 0.65 9.7 5.6 3.9 7.2 0.2 2.3 1 1 0 2 2 2 0 Tetratricopeptide repeat-like domain Rib_recp_KP_reg PF05104.12 EME67708.1 - 1.1 10.3 9.2 2.4 9.2 9.2 1.5 1 0 0 1 1 1 0 Ribosome receptor lysine/proline rich region DNA_pol_A PF00476.20 EME67709.1 - 1.4e-64 218.5 0.0 1.6e-64 218.4 0.0 1.0 1 0 0 1 1 1 1 DNA polymerase family A DUF4164 PF13747.6 EME67711.1 - 0.013 15.7 5.1 0.025 14.8 0.1 2.6 1 1 0 2 2 2 0 Domain of unknown function (DUF4164) cwf21 PF08312.12 EME67711.1 - 0.023 14.8 2.5 0.023 14.8 2.5 1.8 2 0 0 2 2 2 0 cwf21 domain Cep57_CLD_2 PF14197.6 EME67711.1 - 0.023 14.8 7.0 0.053 13.6 6.8 1.7 1 1 0 1 1 1 0 Centrosome localisation domain of PPC89 Flg_hook PF02120.16 EME67711.1 - 0.056 13.3 1.6 0.094 12.6 0.2 1.9 1 1 0 2 2 2 0 Flagellar hook-length control protein FliK HpaP PF09483.10 EME67711.1 - 0.063 13.5 0.2 0.6 10.4 0.0 2.1 1 1 1 2 2 2 0 Type III secretion protein (HpaP) Nas2_N PF18265.1 EME67711.1 - 0.14 12.1 2.0 5.3 7.0 0.0 2.6 2 1 0 2 2 2 0 Nas2 N_terminal domain DUF4139 PF13598.6 EME67712.1 - 3.8e-06 26.8 0.0 7.6e-06 25.8 0.0 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF4139) BON PF04972.17 EME67713.1 - 1.5e-19 70.1 8.9 1.3e-09 38.3 2.7 2.2 2 0 0 2 2 2 2 BON domain SNARE_assoc PF09335.11 EME67714.1 - 1.1e-18 67.8 13.8 2.7e-18 66.6 9.4 2.4 1 1 1 2 2 2 2 SNARE associated Golgi protein PA28_alpha PF02251.18 EME67714.1 - 0.0052 16.8 0.0 0.0084 16.1 0.0 1.3 1 0 0 1 1 1 1 Proteasome activator pa28 alpha subunit Glycos_transf_2 PF00535.26 EME67715.1 - 3.9e-24 85.4 0.0 6.3e-24 84.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 EME67715.1 - 5.6e-11 42.8 0.8 1.1e-10 41.8 0.8 1.6 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 EME67715.1 - 0.0066 16.0 0.0 0.0092 15.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 EME67715.1 - 0.029 14.9 0.0 0.046 14.2 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase family 2 ACCA PF03255.14 EME67716.1 - 3.6e-62 208.5 0.0 5.3e-62 208.0 0.0 1.2 1 0 0 1 1 1 1 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit Carboxyl_trans PF01039.22 EME67716.1 - 9.7e-20 70.7 0.1 1.1e-19 70.5 0.1 1.1 1 0 0 1 1 1 1 Carboxyl transferase domain MdcE PF06833.11 EME67716.1 - 3e-07 30.2 0.5 4.3e-07 29.7 0.5 1.2 1 0 0 1 1 1 1 Malonate decarboxylase gamma subunit (MdcE) ABC_tran_CTD PF16326.5 EME67716.1 - 0.085 13.1 0.2 0.28 11.5 0.2 1.8 2 0 0 2 2 2 0 ABC transporter C-terminal domain Rieske PF00355.26 EME67717.1 - 5e-09 36.0 0.0 5.8e-09 35.8 0.0 1.1 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain EVE PF01878.18 EME67718.1 - 2.8e-45 153.9 0.0 3.1e-45 153.7 0.0 1.0 1 0 0 1 1 1 1 EVE domain YCII PF03795.14 EME67719.1 - 8.2e-17 61.4 0.0 9.1e-17 61.3 0.0 1.0 1 0 0 1 1 1 1 YCII-related domain DUF4337 PF14235.6 EME67720.1 - 4.8e-42 143.8 4.3 6e-42 143.5 4.3 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4337) Hemerythrin PF01814.23 EME67721.1 - 8.2e-13 49.1 0.6 9.1e-13 49.0 0.6 1.0 1 0 0 1 1 1 1 Hemerythrin HHE cation binding domain HEAT_EZ PF13513.6 EME67721.1 - 0.0027 18.2 0.1 0.007 16.9 0.0 1.8 2 0 0 2 2 2 1 HEAT-like repeat Bac_DNA_binding PF00216.21 EME67722.1 - 6.7e-33 112.8 0.1 7.3e-33 112.6 0.1 1.0 1 0 0 1 1 1 1 Bacterial DNA-binding protein HU-HIG PF18291.1 EME67722.1 - 1.2e-07 31.8 0.0 1.3e-07 31.7 0.0 1.0 1 0 0 1 1 1 1 HU domain fused to wHTH, Ig, or Glycine-rich motif DUF2267 PF10025.9 EME67722.1 - 0.0052 17.0 0.2 0.0067 16.7 0.2 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2267) HU-CCDC81_euk_2 PF18289.1 EME67722.1 - 0.0063 16.6 0.0 0.009 16.1 0.0 1.2 1 0 0 1 1 1 1 CCDC81 eukaryotic HU domain 2 HU-CCDC81_euk_1 PF14908.6 EME67722.1 - 0.03 14.5 0.0 0.035 14.3 0.0 1.1 1 0 0 1 1 1 0 CCDC81 eukaryotic HU domain 1 HU-DNA_bdg PF14848.6 EME67722.1 - 0.03 14.3 0.0 0.046 13.7 0.0 1.4 1 1 0 1 1 1 0 DNA-binding domain HU-CCDC81_bac_2 PF18175.1 EME67722.1 - 0.11 12.4 0.0 0.16 11.9 0.0 1.2 1 0 0 1 1 1 0 CCDC81-like prokaryotic HU domain 2 ROS_MUCR PF05443.11 EME67723.1 - 2.4e-46 156.8 0.0 2.7e-46 156.6 0.0 1.0 1 0 0 1 1 1 1 ROS/MUCR transcriptional regulator protein Response_reg PF00072.24 EME67724.1 - 1e-16 61.1 0.0 1.5e-16 60.5 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain GFO_IDH_MocA PF01408.22 EME67724.1 - 0.0068 17.2 0.0 0.0096 16.7 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Hemerythrin PF01814.23 EME67725.1 - 1.2e-09 38.9 2.3 1.6e-09 38.5 2.3 1.1 1 0 0 1 1 1 1 Hemerythrin HHE cation binding domain WYL_2 PF10902.8 EME67725.1 - 0.013 15.9 0.6 0.024 15.0 0.1 1.7 2 0 0 2 2 2 0 WYL_2, Sm-like SH3 beta-barrel fold Utp13 PF08625.11 EME67725.1 - 0.055 13.4 0.6 0.11 12.4 0.2 1.7 1 1 1 2 2 2 0 Utp13 specific WD40 associated domain Hemerythrin PF01814.23 EME67726.1 - 3.3e-09 37.5 0.1 7.8e-09 36.3 0.1 1.7 1 0 0 1 1 1 1 Hemerythrin HHE cation binding domain Response_reg PF00072.24 EME67727.1 - 9.6e-20 70.8 0.0 1.7e-19 70.1 0.0 1.4 1 0 0 1 1 1 1 Response regulator receiver domain Hemerythrin PF01814.23 EME67727.1 - 2.7e-06 28.0 3.7 4.2e-06 27.4 3.7 1.2 1 0 0 1 1 1 1 Hemerythrin HHE cation binding domain PFK PF00365.20 EME67727.1 - 0.24 10.7 0.0 0.32 10.3 0.0 1.2 1 0 0 1 1 1 0 Phosphofructokinase Hemerythrin PF01814.23 EME67728.1 - 2.5e-10 41.1 0.2 3.3e-10 40.7 0.2 1.2 1 0 0 1 1 1 1 Hemerythrin HHE cation binding domain RraB PF06877.11 EME67728.1 - 0.057 14.2 0.0 0.21 12.3 0.0 1.8 2 0 0 2 2 2 0 Regulator of ribonuclease activity B MCPsignal PF00015.21 EME67729.1 - 1.1e-30 106.7 50.9 1.3e-28 100.0 32.2 3.2 1 1 2 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF948 PF06103.11 EME67729.1 - 8e-06 26.0 26.3 0.0017 18.6 2.6 5.3 2 1 4 6 6 6 2 Bacterial protein of unknown function (DUF948) HAMP PF00672.25 EME67729.1 - 0.0069 16.7 0.3 0.0069 16.7 0.3 4.6 6 1 0 6 6 4 1 HAMP domain DUF1664 PF07889.12 EME67729.1 - 0.02 15.0 16.3 1.2 9.2 4.7 4.0 2 2 2 4 4 4 0 Protein of unknown function (DUF1664) HAP1_N PF04849.13 EME67729.1 - 0.034 13.4 0.2 0.1 11.8 0.2 1.7 1 0 0 1 1 1 0 HAP1 N-terminal conserved region Tubulin_C PF03953.17 EME67729.1 - 0.064 13.4 0.0 0.22 11.7 0.0 1.9 1 1 0 1 1 1 0 Tubulin C-terminal domain TMPIT PF07851.13 EME67729.1 - 0.15 11.3 2.9 1.6 7.9 0.5 2.3 2 0 0 2 2 2 0 TMPIT-like protein COG5 PF10392.9 EME67729.1 - 0.18 12.0 7.7 0.23 11.6 0.2 2.8 2 1 0 2 2 2 0 Golgi transport complex subunit 5 Syntaxin_2 PF14523.6 EME67729.1 - 0.21 12.0 4.7 1.5 9.2 1.5 3.2 3 2 0 3 3 2 0 Syntaxin-like protein Laminin_II PF06009.12 EME67729.1 - 0.37 10.8 26.9 2.5 8.1 2.0 4.1 1 1 3 4 4 4 0 Laminin Domain II DUF3450 PF11932.8 EME67729.1 - 0.9 8.8 23.8 0.74 9.1 2.1 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF3450) Myosin_tail_1 PF01576.19 EME67729.1 - 0.96 7.2 7.1 0.053 11.3 1.7 1.5 2 0 0 2 2 2 0 Myosin tail DUF241 PF03087.14 EME67729.1 - 1.3 8.8 9.9 1.3 8.8 1.9 2.2 2 0 0 2 2 2 0 Arabidopsis protein of unknown function Fez1 PF06818.15 EME67729.1 - 2.2 8.7 5.0 5.5 7.4 1.1 2.1 2 0 0 2 2 2 0 Fez1 Nup54 PF13874.6 EME67729.1 - 2.3 8.3 14.2 2.4 8.3 1.4 2.7 2 2 0 2 2 2 0 Nucleoporin complex subunit 54 IFT57 PF10498.9 EME67729.1 - 2.7 6.9 9.5 0.5 9.3 2.4 2.5 2 1 1 3 3 3 0 Intra-flagellar transport protein 57 DUF2203 PF09969.9 EME67729.1 - 3.7 8.3 15.4 2.2 9.0 0.7 3.5 2 1 1 3 3 3 0 Uncharacterized conserved protein (DUF2203) V_ATPase_I PF01496.19 EME67729.1 - 4.8 5.0 7.9 3.6 5.4 1.7 2.0 1 1 0 2 2 2 0 V-type ATPase 116kDa subunit family Plk4_PB2 PF18409.1 EME67729.1 - 4.8 7.9 6.1 5.1 7.8 0.7 2.8 2 1 1 3 3 3 0 Polo-like Kinase 4 Polo Box 2 Response_reg PF00072.24 EME67731.1 - 9.9e-07 28.9 0.0 1.5e-06 28.4 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain Hpt PF01627.23 EME67731.1 - 2.3e-05 24.6 0.0 4e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 Hpt domain LPD23 PF18838.1 EME67732.1 - 0.0099 15.6 0.6 0.026 14.3 0.1 1.8 1 1 1 2 2 2 1 Large polyvalent protein associated domain 23 EAL PF00563.20 EME67735.1 - 2.1e-51 174.7 0.1 3e-51 174.2 0.1 1.1 1 0 0 1 1 1 1 EAL domain DUF1465 PF07323.12 EME67736.1 - 2.2e-22 79.6 0.6 2.7e-22 79.3 0.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1465) FidL_like PF15941.5 EME67736.1 - 0.14 12.6 0.0 0.22 12.0 0.0 1.3 1 0 0 1 1 1 0 FidL-like putative membrane protein HTH_3 PF01381.22 EME67737.1 - 1.7e-12 47.2 0.3 2.1e-12 46.9 0.3 1.1 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 EME67737.1 - 3.3e-12 46.5 4.3 3.8e-12 46.4 4.3 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.6 EME67737.1 - 7.2e-08 32.3 0.1 9.6e-08 31.9 0.1 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 EME67737.1 - 1.1e-06 28.5 0.0 1.2e-06 28.4 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 EME67737.1 - 9.7e-05 22.2 0.2 0.00012 21.9 0.2 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.6 EME67737.1 - 0.00063 19.4 0.2 0.0012 18.6 0.1 1.5 1 1 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 EME67737.1 - 0.0019 17.7 0.3 0.0029 17.1 0.3 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 MqsA_antitoxin PF15731.5 EME67737.1 - 0.01 15.9 0.0 0.01 15.9 0.0 1.1 1 0 0 1 1 1 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA Pou PF00157.17 EME67737.1 - 0.024 14.6 0.2 0.033 14.2 0.2 1.4 1 1 0 1 1 1 0 Pou domain - N-terminal to homeobox domain HTH_23 PF13384.6 EME67737.1 - 0.03 14.1 0.2 0.048 13.5 0.2 1.3 1 0 0 1 1 1 0 Homeodomain-like domain DUF3071 PF11268.8 EME67737.1 - 0.038 14.1 0.3 0.046 13.8 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3071) Sigma70_r4_2 PF08281.12 EME67737.1 - 0.041 13.6 0.1 0.069 12.8 0.1 1.5 1 1 0 1 1 1 0 Sigma-70, region 4 HTH_24 PF13412.6 EME67737.1 - 0.056 13.0 0.1 0.085 12.4 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_26 PF13443.6 EME67737.1 - 0.067 13.6 0.1 0.079 13.4 0.1 1.2 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain FUR PF01475.19 EME67738.1 - 2.2e-36 124.6 0.3 2.6e-36 124.4 0.3 1.0 1 0 0 1 1 1 1 Ferric uptake regulator family RepL PF05732.11 EME67738.1 - 0.002 17.6 0.0 0.28 10.6 0.0 2.1 2 0 0 2 2 2 2 Firmicute plasmid replication protein (RepL) HTH_23 PF13384.6 EME67738.1 - 0.0049 16.6 0.7 0.011 15.5 0.2 1.9 2 0 0 2 2 2 1 Homeodomain-like domain HTH_29 PF13551.6 EME67738.1 - 0.048 13.7 0.0 0.094 12.8 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn helix HTH_20 PF12840.7 EME67738.1 - 0.058 13.5 0.0 0.11 12.5 0.0 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain Response_reg PF00072.24 EME67739.1 - 7.8e-25 87.2 0.1 8.8e-25 87.1 0.1 1.0 1 0 0 1 1 1 1 Response regulator receiver domain ATP-cone PF03477.16 EME67740.1 - 4.9e-19 68.7 0.3 5.5e-19 68.5 0.3 1.0 1 0 0 1 1 1 1 ATP cone domain PBC PF03792.13 EME67740.1 - 0.022 14.5 0.1 0.036 13.8 0.1 1.3 1 0 0 1 1 1 0 PBC domain DUF58 PF01882.18 EME67741.1 - 2.4e-14 53.4 1.4 3.1e-14 53.0 0.6 1.6 2 0 0 2 2 2 1 Protein of unknown function DUF58 GTP_EFTU PF00009.27 EME67742.1 - 1.5e-52 178.0 0.2 2.3e-52 177.4 0.2 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain LepA_C PF06421.12 EME67742.1 - 2.9e-50 168.9 0.3 5.8e-50 167.9 0.3 1.5 1 0 0 1 1 1 1 GTP-binding protein LepA C-terminus EFG_C PF00679.24 EME67742.1 - 1.5e-21 76.2 0.0 3.2e-21 75.2 0.0 1.6 1 0 0 1 1 1 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.25 EME67742.1 - 2.3e-08 34.3 0.2 4.9e-08 33.3 0.2 1.6 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 EME67742.1 - 8.3e-06 25.9 0.0 1.7e-05 24.8 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase EFG_II PF14492.6 EME67742.1 - 2.5e-05 24.3 0.0 0.00011 22.2 0.0 2.1 1 1 0 1 1 1 1 Elongation Factor G, domain II Ras PF00071.22 EME67742.1 - 0.0056 16.3 0.0 0.01 15.4 0.0 1.3 1 0 0 1 1 1 1 Ras family SRPRB PF09439.10 EME67742.1 - 0.026 13.9 0.0 0.066 12.6 0.0 1.7 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit RF3_C PF16658.5 EME67742.1 - 0.054 13.3 0.0 0.091 12.6 0.0 1.4 1 0 0 1 1 1 0 Class II release factor RF3, C-terminal domain Roc PF08477.13 EME67742.1 - 0.057 13.6 0.0 0.15 12.3 0.0 1.7 1 1 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase MMR_HSR1_Xtn PF16897.5 EME67742.1 - 0.069 13.2 0.0 0.15 12.1 0.0 1.5 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain TPR_12 PF13424.6 EME67743.1 - 0.0064 16.8 6.8 2 8.7 0.0 4.5 2 1 2 4 4 4 2 Tetratricopeptide repeat SNAP PF14938.6 EME67743.1 - 0.12 11.7 0.9 7 6.0 0.0 2.7 2 1 1 3 3 3 0 Soluble NSF attachment protein, SNAP TPR_10 PF13374.6 EME67743.1 - 0.28 11.1 11.2 3.6 7.6 0.1 5.2 5 1 0 5 5 5 0 Tetratricopeptide repeat TPR_2 PF07719.17 EME67743.1 - 0.44 10.8 6.5 76 3.8 0.1 5.1 6 0 0 6 6 6 0 Tetratricopeptide repeat DNA_ligase_aden PF01653.18 EME67744.1 - 3.3e-108 361.6 0.0 4.4e-108 361.2 0.0 1.1 1 0 0 1 1 1 1 NAD-dependent DNA ligase adenylation domain DNA_ligase_OB PF03120.16 EME67744.1 - 4.3e-35 119.4 3.8 9.6e-35 118.3 3.8 1.6 1 0 0 1 1 1 1 NAD-dependent DNA ligase OB-fold domain HHH_2 PF12826.7 EME67744.1 - 2.4e-17 62.7 0.1 6e-17 61.5 0.1 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif BRCT PF00533.26 EME67744.1 - 2.2e-12 47.2 0.0 4.1e-12 46.3 0.0 1.4 1 0 0 1 1 1 1 BRCA1 C Terminus (BRCT) domain DNA_ligase_ZBD PF03119.16 EME67744.1 - 2.2e-10 40.4 6.1 5.2e-10 39.2 6.1 1.7 1 0 0 1 1 1 1 NAD-dependent DNA ligase C4 zinc finger domain HHH_5 PF14520.6 EME67744.1 - 1.4e-07 32.0 0.0 0.00071 20.1 0.0 3.0 3 0 0 3 3 3 2 Helix-hairpin-helix domain PTCB-BRCT PF12738.7 EME67744.1 - 0.0068 16.3 0.1 0.018 15.0 0.1 1.7 1 0 0 1 1 1 1 twin BRCT domain HHH PF00633.23 EME67744.1 - 0.01 15.6 1.0 0.04 13.8 0.0 2.6 3 0 0 3 3 3 0 Helix-hairpin-helix motif SMC_N PF02463.19 EME67745.1 - 5.2e-15 55.5 0.0 8.6e-15 54.8 0.0 1.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 EME67745.1 - 3.7e-08 34.1 0.3 1.4e-07 32.3 0.0 2.0 2 1 0 2 2 2 1 AAA domain AAA_21 PF13304.6 EME67745.1 - 9.1e-07 29.0 0.0 0.0019 18.1 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 EME67745.1 - 0.0017 18.1 0.1 0.0038 16.9 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 EME67745.1 - 0.0062 16.8 0.0 0.11 12.7 0.0 2.7 2 1 0 2 2 2 1 AAA domain NTPase_P4 PF11602.8 EME67745.1 - 0.0082 15.4 0.2 0.11 11.6 0.0 2.3 2 0 0 2 2 2 1 ATPase P4 of dsRNA bacteriophage phi-12 RsgA_GTPase PF03193.16 EME67745.1 - 0.048 13.6 0.1 0.1 12.5 0.1 1.5 1 0 0 1 1 1 0 RsgA GTPase ApbE PF02424.15 EME67745.1 - 0.076 12.5 0.4 0.15 11.6 0.4 1.5 1 0 0 1 1 1 0 ApbE family DUF2813 PF11398.8 EME67745.1 - 0.12 11.6 0.2 0.23 10.7 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2813) AAA_13 PF13166.6 EME67745.1 - 0.15 10.6 0.8 0.23 10.1 0.8 1.2 1 0 0 1 1 1 0 AAA domain Fez1 PF06818.15 EME67745.1 - 1.7 9.1 4.8 0.73 10.3 1.8 1.8 2 0 0 2 2 2 0 Fez1 YfiO PF13525.6 EME67746.1 - 1.6e-53 181.5 9.7 2.1e-53 181.1 9.7 1.2 1 0 0 1 1 1 1 Outer membrane lipoprotein TPR_18 PF13512.6 EME67746.1 - 9.6e-18 64.7 7.1 9.6e-18 64.7 7.1 2.1 2 1 0 2 2 2 1 Tetratricopeptide repeat TPR_6 PF13174.6 EME67746.1 - 1.8e-14 53.3 11.4 6.8e-05 23.3 0.1 5.3 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_16 PF13432.6 EME67746.1 - 3.2e-09 37.3 10.7 0.00053 20.6 1.6 4.4 3 1 1 4 4 4 4 Tetratricopeptide repeat TPR_14 PF13428.6 EME67746.1 - 5.6e-08 33.0 9.1 0.023 15.5 0.0 4.8 3 1 1 4 4 4 3 Tetratricopeptide repeat TPR_19 PF14559.6 EME67746.1 - 2.1e-07 31.4 7.0 0.0042 17.6 0.7 4.2 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_21 PF09976.9 EME67746.1 - 3.8e-06 26.8 5.7 0.00082 19.1 1.7 2.4 1 1 1 2 2 2 2 Tetratricopeptide repeat-like domain TPR_2 PF07719.17 EME67746.1 - 0.018 15.1 0.2 0.018 15.1 0.2 5.7 6 0 0 6 6 6 0 Tetratricopeptide repeat ANAPC3 PF12895.7 EME67746.1 - 0.034 14.4 1.6 0.034 14.4 1.6 3.2 2 1 1 3 3 3 0 Anaphase-promoting complex, cyclosome, subunit 3 TPR_1 PF00515.28 EME67746.1 - 0.15 11.9 0.2 0.15 11.9 0.2 4.6 5 0 0 5 5 5 0 Tetratricopeptide repeat TPR_12 PF13424.6 EME67746.1 - 1.3 9.4 13.4 7.8 6.9 0.6 4.7 1 1 4 5 5 5 0 Tetratricopeptide repeat GatB_N PF02934.15 EME67748.1 - 2.6e-111 371.4 0.0 3.3e-111 371.1 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 EME67748.1 - 2.5e-48 163.7 0.1 4.2e-48 163.0 0.1 1.3 1 0 0 1 1 1 1 GatB domain Amidase PF01425.21 EME67749.1 - 2.6e-149 498.0 0.1 3e-149 497.8 0.1 1.0 1 0 0 1 1 1 1 Amidase Glu-tRNAGln PF02686.15 EME67750.1 - 5.1e-22 77.9 0.1 6.3e-22 77.6 0.1 1.1 1 0 0 1 1 1 1 Glu-tRNAGln amidotransferase C subunit RuvX PF03652.15 EME67751.1 - 1.3e-39 135.7 0.0 1.4e-39 135.5 0.0 1.0 1 0 0 1 1 1 1 Holliday junction resolvase SidE PF12252.8 EME67751.1 - 0.14 9.6 0.0 0.21 9.1 0.0 1.2 1 0 0 1 1 1 0 Dot/Icm substrate protein Chorismate_synt PF01264.21 EME67754.1 - 3.1e-141 469.8 0.1 3.6e-141 469.6 0.1 1.0 1 0 0 1 1 1 1 Chorismate synthase adh_short_C2 PF13561.6 EME67755.1 - 1.1e-86 290.2 0.0 1.3e-86 290.0 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 EME67755.1 - 9.6e-19 67.6 0.0 1.3e-18 67.2 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 EME67755.1 - 0.0026 17.7 0.0 0.0044 17.0 0.0 1.4 1 0 0 1 1 1 1 KR domain CBS PF00571.28 EME67756.1 - 2.3e-22 79.2 1.3 5.1e-11 42.9 0.2 2.2 2 0 0 2 2 2 2 CBS domain Peptidase_M55 PF04951.13 EME67756.1 - 0.0071 15.8 0.0 0.084 12.3 0.0 2.0 2 0 0 2 2 2 1 D-aminopeptidase CSD PF00313.22 EME67757.1 - 9.9e-24 83.0 0.0 1.1e-23 82.9 0.0 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain OB_RNB PF08206.11 EME67757.1 - 0.00012 21.6 0.0 0.00017 21.2 0.0 1.3 1 0 0 1 1 1 1 Ribonuclease B OB domain Rho_RNA_bind PF07497.12 EME67757.1 - 0.033 14.1 0.0 0.037 13.9 0.0 1.2 1 0 0 1 1 1 0 Rho termination factor, RNA-binding domain TraW_N PF12477.8 EME67758.1 - 0.0016 18.3 0.4 0.0039 17.1 0.4 1.6 1 0 0 1 1 1 1 Sex factor F TraW protein N terminal Defensin_propep PF00879.18 EME67758.1 - 0.36 11.1 1.6 0.69 10.2 1.6 1.5 1 0 0 1 1 1 0 Defensin propeptide Rhodanese PF00581.20 EME67759.1 - 2.4e-12 47.3 0.0 3.7e-12 46.7 0.0 1.3 1 1 0 1 1 1 1 Rhodanese-like domain Peptidase_S49 PF01343.18 EME67760.1 - 3.3e-15 56.3 0.0 4.9e-15 55.8 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S49 Herpes_ICP4_N PF03584.15 EME67760.1 - 0.028 14.2 0.0 0.044 13.6 0.0 1.2 1 0 0 1 1 1 0 Herpesvirus ICP4-like protein N-terminal region AAA_31 PF13614.6 EME67761.1 - 2e-12 47.4 0.0 5.7e-12 45.9 0.0 1.6 1 1 0 1 1 1 1 AAA domain CbiA PF01656.23 EME67761.1 - 2e-09 37.6 0.0 2.1e-09 37.5 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 EME67761.1 - 6.6e-08 32.3 0.0 9.6e-08 31.8 0.0 1.2 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase MipZ PF09140.11 EME67761.1 - 0.0018 17.6 0.1 0.0058 16.0 0.1 1.8 2 0 0 2 2 2 1 ATPase MipZ ArsA_ATPase PF02374.15 EME67761.1 - 0.0028 16.9 0.0 0.0054 15.9 0.0 1.4 1 0 0 1 1 1 1 Anion-transporting ATPase CBP_BcsQ PF06564.12 EME67761.1 - 0.014 14.9 0.0 0.67 9.4 0.0 2.5 3 0 0 3 3 3 0 Cellulose biosynthesis protein BcsQ SRP54 PF00448.22 EME67761.1 - 0.03 14.0 0.1 0.077 12.6 0.0 1.6 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain VirC1 PF07015.11 EME67761.1 - 0.078 12.3 0.0 0.24 10.7 0.0 1.7 2 0 0 2 2 2 0 VirC1 protein DUF853 PF05872.12 EME67761.1 - 0.091 11.3 0.1 0.12 10.9 0.1 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF853) Fer4_NifH PF00142.18 EME67761.1 - 0.1 12.0 0.0 0.16 11.4 0.0 1.2 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CLP1_P PF16575.5 EME67761.1 - 0.16 11.7 0.0 0.25 11.1 0.0 1.3 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop CM_2 PF01817.21 EME67762.1 - 0.12 12.7 0.0 3.5 8.0 0.0 2.9 3 0 0 3 3 3 0 Chorismate mutase type II Ldh_1_N PF00056.23 EME67763.1 - 2.1e-37 128.4 0.3 3.6e-37 127.6 0.3 1.4 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.18 EME67763.1 - 1.4e-29 103.1 0.0 1.9e-29 102.7 0.0 1.1 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain Glyco_hydro_4 PF02056.16 EME67763.1 - 0.0047 16.5 0.2 0.053 13.1 0.1 2.2 1 1 1 2 2 2 1 Family 4 glycosyl hydrolase Glyco_hydro_4C PF11975.8 EME67763.1 - 0.0078 16.3 0.0 0.011 15.8 0.0 1.2 1 0 0 1 1 1 1 Family 4 glycosyl hydrolase C-terminal domain UDPG_MGDP_dh_N PF03721.14 EME67763.1 - 0.033 13.8 0.5 0.17 11.4 0.5 2.0 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ATP-grasp_2 PF08442.10 EME67764.1 - 6.1e-79 264.3 3.1 6.1e-79 264.3 1.4 1.8 2 0 0 2 2 2 1 ATP-grasp domain Ligase_CoA PF00549.19 EME67764.1 - 5.1e-28 97.8 0.9 8.8e-28 97.0 0.9 1.4 1 0 0 1 1 1 1 CoA-ligase ATP-grasp_5 PF13549.6 EME67764.1 - 1.9e-11 43.9 0.8 1.9e-11 43.9 0.8 2.2 2 1 0 2 2 2 1 ATP-grasp domain CPSase_L_D2 PF02786.17 EME67764.1 - 0.002 17.7 0.7 0.0097 15.4 0.7 2.2 1 1 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain GARS_A PF01071.19 EME67764.1 - 0.16 11.7 2.4 0.72 9.6 0.4 2.7 3 1 0 3 3 3 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CoA_binding PF02629.19 EME67765.1 - 1.3e-31 109.1 0.6 1.3e-31 109.1 0.6 1.9 2 0 0 2 2 2 1 CoA binding domain Ligase_CoA PF00549.19 EME67765.1 - 7.1e-19 68.1 0.4 1.1e-18 67.6 0.4 1.2 1 0 0 1 1 1 1 CoA-ligase Succ_CoA_lig PF13607.6 EME67765.1 - 1e-09 38.3 0.1 1.6e-09 37.7 0.1 1.3 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 EME67765.1 - 0.00096 19.6 0.1 0.0024 18.4 0.1 1.7 2 0 0 2 2 2 1 CoA binding domain Phage_GPO PF05929.11 EME67765.1 - 0.093 12.3 0.1 0.13 11.9 0.1 1.1 1 0 0 1 1 1 0 Phage capsid scaffolding protein (GPO) serine peptidase Transket_pyr PF02779.24 EME67766.1 - 6e-65 218.2 0.0 1.4e-64 217.1 0.0 1.7 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain E1_dh PF00676.20 EME67766.1 - 6.2e-59 199.4 0.0 1.3e-58 198.4 0.0 1.5 2 0 0 2 2 2 1 Dehydrogenase E1 component OxoGdeHyase_C PF16870.5 EME67766.1 - 4.2e-51 172.6 0.0 7.1e-51 171.9 0.0 1.4 1 0 0 1 1 1 1 2-oxoglutarate dehydrogenase C-terminal 2-oxogl_dehyd_N PF16078.5 EME67766.1 - 1.8e-17 62.6 0.1 4.8e-17 61.3 0.1 1.8 1 0 0 1 1 1 1 2-oxoglutarate dehydrogenase N-terminus DUF501 PF04417.12 EME67766.1 - 0.01 15.7 0.1 0.021 14.6 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF501) Biotin_lipoyl PF00364.22 EME67767.1 - 7e-11 41.8 0.1 7.5e-11 41.7 0.1 1.0 1 0 0 1 1 1 1 Biotin-requiring enzyme Amidase_3 PF01520.18 EME67768.1 - 8.4e-49 166.0 0.0 1.4e-48 165.3 0.0 1.3 1 1 0 1 1 1 1 N-acetylmuramoyl-L-alanine amidase Transgly PF00912.22 EME67770.1 - 1.3e-60 203.9 0.0 1.8e-60 203.4 0.0 1.2 1 0 0 1 1 1 1 Transglycosylase Transpeptidase PF00905.22 EME67770.1 - 7.2e-39 133.8 0.0 3.4e-38 131.6 0.0 2.0 1 1 0 1 1 1 1 Penicillin binding protein transpeptidase domain PCB_OB PF17092.5 EME67770.1 - 4.1e-23 82.3 0.1 8.6e-23 81.2 0.1 1.6 1 0 0 1 1 1 1 Penicillin-binding protein OB-like domain Response_reg PF00072.24 EME67771.1 - 3.2e-26 91.7 0.0 3.7e-26 91.5 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain POR PF01558.18 EME67772.1 - 6.4e-43 146.9 0.1 7.5e-43 146.6 0.1 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.21 EME67773.1 - 1.9e-24 86.2 0.2 3.9e-24 85.2 0.2 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 EME67773.1 - 3.8e-14 53.0 0.4 6.3e-14 52.3 0.4 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4_10 PF13237.6 EME67773.1 - 2.5e-06 27.5 9.6 2.5e-06 27.5 9.6 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 EME67773.1 - 2e-05 24.7 9.3 2e-05 24.7 9.3 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.27 EME67773.1 - 4.9e-05 23.0 18.5 0.00048 19.8 2.8 2.7 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 EME67773.1 - 5e-05 23.3 10.0 0.041 14.0 2.5 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 EME67773.1 - 5.5e-05 23.7 9.0 5.5e-05 23.7 9.0 2.1 2 0 0 2 2 1 1 4Fe-4S dicluster domain DXP_synthase_N PF13292.6 EME67773.1 - 0.00017 20.9 0.4 0.00017 20.9 0.4 1.7 2 0 0 2 2 2 1 1-deoxy-D-xylulose-5-phosphate synthase Fer4_8 PF13183.6 EME67773.1 - 0.00038 20.8 8.2 0.0011 19.3 8.2 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain TPP_enzyme_N PF02776.18 EME67773.1 - 0.00077 19.1 0.3 0.0015 18.1 0.3 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4_2 PF12797.7 EME67773.1 - 0.00092 19.2 22.4 0.0036 17.3 3.8 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Transket_pyr PF02779.24 EME67773.1 - 0.012 15.3 0.3 0.094 12.4 0.1 2.3 3 0 0 3 3 3 0 Transketolase, pyrimidine binding domain Fer4_15 PF13459.6 EME67773.1 - 0.013 16.2 5.4 0.24 12.1 0.4 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_6 PF12837.7 EME67773.1 - 0.11 12.6 20.5 0.18 12.0 4.3 2.9 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_16 PF13484.6 EME67773.1 - 0.19 12.7 11.8 1.1 10.2 2.3 2.7 1 1 2 3 3 3 0 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 EME67773.1 - 2.3 8.9 13.0 2.9 8.5 10.3 2.5 2 1 0 2 2 2 0 4Fe-4S dicluster domain LysR_substrate PF03466.20 EME67774.1 - 9.6e-39 132.9 9.8 1.4e-38 132.4 9.8 1.3 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 EME67774.1 - 4.3e-23 81.0 0.1 2.6e-22 78.5 0.1 2.3 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_30 PF13556.6 EME67774.1 - 0.0051 16.6 0.0 0.014 15.2 0.0 1.7 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain HTH_5 PF01022.20 EME67774.1 - 0.013 15.4 0.3 0.026 14.4 0.3 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 EME67774.1 - 0.039 14.0 0.3 0.16 12.1 0.2 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain Acyl-CoA_dh_N PF02771.16 EME67775.1 - 2e-34 118.6 0.0 3.3e-34 117.9 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_1 PF00441.24 EME67775.1 - 1.1e-24 87.3 0.3 1.7e-24 86.8 0.3 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 EME67775.1 - 4.1e-22 78.2 0.0 6.7e-22 77.5 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 EME67775.1 - 0.0042 17.3 0.1 0.013 15.7 0.1 1.8 1 1 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_ox_N PF14749.6 EME67775.1 - 0.17 12.5 0.0 0.31 11.6 0.0 1.4 1 0 0 1 1 1 0 Acyl-coenzyme A oxidase N-terminal ETF PF01012.21 EME67776.1 - 2.5e-19 69.9 0.9 2.8e-19 69.7 0.9 1.1 1 0 0 1 1 1 1 Electron transfer flavoprotein domain DZR PF12773.7 EME67777.1 - 0.0043 17.0 5.8 1 9.4 0.8 2.9 2 1 1 3 3 3 3 Double zinc ribbon HypA PF01155.19 EME67777.1 - 0.037 14.0 3.6 1.5 8.9 0.2 2.5 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 EME67777.1 - 0.039 14.1 4.9 0.87 9.8 0.4 2.9 2 1 0 2 2 2 0 Zinc ribbon domain Nudix_N_2 PF14803.6 EME67777.1 - 0.41 10.6 13.0 3.8 7.5 0.1 5.1 5 0 0 5 5 5 0 Nudix N-terminal TF_Zn_Ribbon PF08271.12 EME67777.1 - 0.71 9.4 8.4 21 4.7 0.0 4.3 4 0 0 4 4 4 0 TFIIB zinc-binding zf-CHY PF05495.12 EME67777.1 - 1.3 9.6 3.9 3.7 8.1 0.6 2.4 1 1 1 2 2 2 0 CHY zinc finger zf-Sec23_Sec24 PF04810.15 EME67777.1 - 3.5 7.8 7.3 30 4.8 0.1 3.9 4 1 1 5 5 5 0 Sec23/Sec24 zinc finger OrfB_Zn_ribbon PF07282.11 EME67777.1 - 6.2 6.8 7.1 12 5.9 0.4 2.9 2 1 1 3 3 3 0 Putative transposase DNA-binding domain zf-NADH-PPase PF09297.11 EME67777.1 - 6.2 6.6 13.4 1.7 8.4 0.1 4.6 5 0 0 5 5 5 0 NADH pyrophosphatase zinc ribbon domain DUF1863 PF08937.11 EME67780.1 - 9e-23 81.0 0.0 1.3e-22 80.5 0.0 1.2 1 0 0 1 1 1 1 MTH538 TIR-like domain (DUF1863) DUF2190 PF09956.9 EME67781.1 - 1.9e-20 73.3 8.2 2.3e-20 73.0 8.2 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2190) STAS_2 PF13466.6 EME67782.1 - 0.0011 19.3 0.5 0.0013 19.0 0.5 1.1 1 0 0 1 1 1 1 STAS domain gpW PF02831.15 EME67782.1 - 0.099 12.6 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 gpW Mu-like_gpT PF10124.9 EME67783.1 - 3.9e-14 52.7 0.0 2.9e-06 26.8 0.0 2.1 1 1 1 2 2 2 2 Mu-like prophage major head subunit gpT Peptidase_S78 PF04586.17 EME67783.1 - 0.00049 20.3 0.0 0.00084 19.5 0.0 1.3 1 0 0 1 1 1 1 Caudovirus prohead serine protease Phage_portal_2 PF05136.13 EME67784.1 - 5.9e-97 325.1 0.0 8.5e-97 324.5 0.0 1.2 1 0 0 1 1 1 1 Phage portal protein, lambda family ParE_toxin PF05016.15 EME67785.1 - 5.6e-12 46.1 0.4 6.7e-12 45.9 0.4 1.1 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE CbiX PF01903.17 EME67785.1 - 0.074 13.4 0.0 6.6 7.1 0.0 2.2 2 0 0 2 2 2 0 CbiX ParD_antitoxin PF03693.14 EME67786.1 - 1.5e-08 34.9 0.1 1.9e-08 34.6 0.1 1.2 1 0 0 1 1 1 1 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH RHH_1 PF01402.21 EME67786.1 - 2.4e-05 24.1 0.6 0.0027 17.6 0.0 2.6 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family RHH_8 PF17723.1 EME67786.1 - 0.012 15.8 0.2 0.013 15.6 0.2 1.1 1 0 0 1 1 1 0 Ribbon-Helix-Helix transcriptional regulator family YfdX PF10938.8 EME67786.1 - 0.027 14.4 0.2 0.054 13.4 0.2 1.4 1 1 0 1 1 1 0 YfdX protein Terminase_GpA PF05876.12 EME67787.1 - 0.022 13.3 0.1 0.023 13.2 0.1 1.1 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) UDPG_MGDP_dh_N PF03721.14 EME67788.1 - 9.2e-24 84.0 0.0 1.1e-23 83.7 0.0 1.1 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ApbA PF02558.16 EME67788.1 - 0.0017 18.1 0.0 0.0024 17.5 0.0 1.2 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_2 PF03446.15 EME67788.1 - 0.0064 16.7 0.0 0.017 15.3 0.0 1.6 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase AlaDh_PNT_C PF01262.21 EME67788.1 - 0.036 13.4 0.0 0.044 13.1 0.0 1.1 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain TrkA_N PF02254.18 EME67788.1 - 0.05 13.9 0.0 0.073 13.3 0.0 1.3 1 0 0 1 1 1 0 TrkA-N domain Sacchrp_dh_NADP PF03435.18 EME67788.1 - 0.2 12.0 0.1 0.48 10.7 0.1 1.8 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Polysacc_synt_2 PF02719.15 EME67790.1 - 1.2e-115 385.7 0.0 1.8e-115 385.1 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein Epimerase PF01370.21 EME67790.1 - 2.8e-21 76.1 0.0 2.2e-20 73.2 0.0 2.1 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 EME67790.1 - 5e-16 58.6 0.0 1.1e-14 54.3 0.0 2.2 1 1 0 1 1 1 1 RmlD substrate binding domain GDP_Man_Dehyd PF16363.5 EME67790.1 - 8.4e-13 48.4 0.0 1.3e-12 47.8 0.0 1.4 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase CoA_binding_3 PF13727.6 EME67790.1 - 3e-12 46.9 0.8 1.5e-11 44.6 0.4 2.1 2 0 0 2 2 2 1 CoA-binding domain 3Beta_HSD PF01073.19 EME67790.1 - 3e-10 39.6 0.0 4.5e-10 39.0 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.6 EME67790.1 - 0.0013 18.6 0.1 0.0036 17.2 0.1 1.8 1 1 0 1 1 1 1 NAD(P)H-binding adh_short PF00106.25 EME67790.1 - 0.0095 15.4 0.0 0.021 14.3 0.0 1.7 1 1 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 EME67790.1 - 0.014 15.4 0.0 0.032 14.1 0.0 1.6 1 0 0 1 1 1 0 KR domain NAD_binding_4 PF07993.12 EME67790.1 - 0.031 13.4 0.1 0.14 11.3 0.0 1.9 2 0 0 2 2 2 0 Male sterility protein AICARFT_IMPCHas PF01808.18 EME67791.1 - 3.9e-115 384.4 0.2 5.1e-115 384.0 0.2 1.1 1 0 0 1 1 1 1 AICARFT/IMPCHase bienzyme MGS PF02142.22 EME67791.1 - 4.7e-26 90.8 0.0 9e-26 89.9 0.0 1.5 1 0 0 1 1 1 1 MGS-like domain CW_binding_2 PF04122.12 EME67791.1 - 0.83 10.3 6.4 17 6.1 2.8 2.9 2 0 0 2 2 2 0 Putative cell wall binding repeat 2 Hydrolase_like PF13242.6 EME67792.1 - 9.8e-16 57.6 0.2 1.5e-15 57.0 0.2 1.3 1 0 0 1 1 1 1 HAD-hyrolase-like HAD_2 PF13419.6 EME67792.1 - 2.4e-07 31.0 0.0 0.00017 21.7 0.0 2.2 2 0 0 2 2 2 2 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 EME67792.1 - 1.3e-05 25.6 0.0 4.7e-05 23.8 0.0 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase PNK3P PF08645.11 EME67792.1 - 2.1e-05 24.3 0.0 2.2e-05 24.2 0.0 1.1 1 0 0 1 1 1 1 Polynucleotide kinase 3 phosphatase Hydrolase_6 PF13344.6 EME67792.1 - 0.00051 20.1 0.0 0.0014 18.7 0.0 1.7 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Glycos_transf_1 PF00534.20 EME67793.1 - 1.7e-32 112.3 0.0 2.4e-32 111.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 EME67793.1 - 2.3e-25 89.6 0.2 4.6e-25 88.6 0.2 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 EME67793.1 - 1.6e-10 41.2 0.0 7.3e-10 39.1 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 EME67793.1 - 2.2e-06 27.8 1.0 3.4e-06 27.2 0.1 1.7 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.20 EME67794.1 - 2.5e-31 108.5 0.0 3.8e-31 107.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 EME67794.1 - 1.7e-28 99.7 0.1 2.6e-28 99.1 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 EME67794.1 - 0.0005 20.5 2.6 0.00064 20.2 0.8 2.0 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 EME67794.1 - 0.0067 16.8 0.0 0.013 15.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 EME67794.1 - 0.061 13.3 0.0 0.14 12.1 0.0 1.8 1 1 0 1 1 1 0 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.20 EME67795.1 - 5.3e-20 71.6 0.0 2.2e-18 66.4 0.0 2.8 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 EME67795.1 - 9.7e-15 55.2 0.0 1.9e-14 54.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 EME67795.1 - 2.6e-12 47.0 0.0 7.5e-12 45.5 0.0 1.8 1 1 1 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 EME67795.1 - 5.2e-09 36.3 0.5 2.8e-08 33.9 0.5 2.1 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 EME67795.1 - 9.4e-06 26.2 4.7 9.4e-06 26.2 4.7 2.7 2 2 0 2 2 2 1 Glycosyl transferase 4-like domain UDPG_MGDP_dh_N PF03721.14 EME67796.1 - 2.6e-15 56.5 0.0 2.9e-15 56.3 0.0 1.1 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AAA_PrkA PF08298.11 EME67797.1 - 2.8e-172 572.6 0.0 3.8e-172 572.1 0.0 1.2 1 0 0 1 1 1 1 PrkA AAA domain PrkA PF06798.12 EME67797.1 - 5.7e-77 258.8 2.3 8.2e-77 258.3 2.3 1.2 1 0 0 1 1 1 1 PrkA serine protein kinase C-terminal domain AAA_16 PF13191.6 EME67797.1 - 0.0015 19.0 0.0 0.0034 17.8 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 EME67797.1 - 0.052 13.8 0.0 0.16 12.3 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 EME67797.1 - 0.071 13.1 0.5 0.4 10.7 0.1 2.5 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) DUF21 PF01595.20 EME67798.1 - 1.6e-45 154.9 3.6 2.4e-45 154.4 3.6 1.2 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain CorC_HlyC PF03471.17 EME67798.1 - 3.6e-19 68.6 0.1 1e-18 67.1 0.0 1.8 2 0 0 2 2 2 1 Transporter associated domain CBS PF00571.28 EME67798.1 - 2.8e-11 43.7 1.3 1e-05 25.8 0.3 2.6 2 0 0 2 2 2 2 CBS domain adh_short_C2 PF13561.6 EME67799.1 - 2.6e-50 171.2 5.5 3.8e-50 170.6 5.5 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 EME67799.1 - 2.2e-46 157.8 5.0 3.5e-46 157.1 5.0 1.2 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 EME67799.1 - 2.1e-11 44.1 5.0 1.2e-09 38.4 5.0 2.2 1 1 0 1 1 1 1 KR domain Epimerase PF01370.21 EME67799.1 - 0.002 17.6 1.5 0.0022 17.5 0.2 1.8 3 0 0 3 3 3 1 NAD dependent epimerase/dehydratase family Acetyltransf_1 PF00583.25 EME67800.1 - 3.7e-22 78.7 0.1 6.5e-12 45.7 0.0 2.1 2 0 0 2 2 2 2 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 EME67800.1 - 1.1e-14 54.6 0.1 8.3e-08 32.6 0.0 2.2 2 0 0 2 2 2 2 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 EME67800.1 - 1.8e-11 44.1 0.0 1.7e-06 28.0 0.0 2.2 2 0 0 2 2 2 2 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 EME67800.1 - 2.1e-07 31.1 0.1 0.00048 20.2 0.0 2.2 2 0 0 2 2 2 2 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 EME67800.1 - 3.1e-06 27.2 0.1 0.0084 16.2 0.0 2.3 2 0 0 2 2 2 2 GCN5-related N-acetyl-transferase Acetyltransf_4 PF13420.7 EME67800.1 - 1.4e-05 25.3 0.0 0.016 15.3 0.0 2.2 2 0 0 2 2 2 2 Acetyltransferase (GNAT) domain FR47 PF08445.10 EME67800.1 - 0.00019 21.3 0.0 0.001 19.0 0.0 2.0 2 0 0 2 2 2 1 FR47-like protein Acetyltransf_6 PF13480.7 EME67800.1 - 0.0013 18.9 0.0 0.042 14.0 0.0 2.8 2 1 1 3 3 3 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 EME67800.1 - 0.0023 17.6 0.0 0.022 14.5 0.0 2.2 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 EME67800.1 - 0.0094 16.6 0.0 0.099 13.3 0.0 2.3 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain Methyltransf_23 PF13489.6 EME67801.1 - 2.3e-11 43.8 0.0 2.9e-11 43.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 EME67801.1 - 1.6e-09 38.3 0.0 4.3e-09 36.9 0.0 1.7 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 EME67801.1 - 1.6e-07 31.9 0.0 4.8e-07 30.4 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 EME67801.1 - 2.1e-06 28.4 0.0 8.1e-06 26.5 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain CheR PF01739.18 EME67801.1 - 0.034 13.6 0.0 0.053 13.0 0.0 1.2 1 0 0 1 1 1 0 CheR methyltransferase, SAM binding domain Methyltransf_8 PF05148.15 EME67801.1 - 0.079 12.8 0.0 0.19 11.5 0.0 1.6 1 1 0 1 1 1 0 Hypothetical methyltransferase Bin3 PF06859.12 EME67801.1 - 0.083 13.5 0.0 0.18 12.4 0.0 1.6 1 0 0 1 1 1 0 Bicoid-interacting protein 3 (Bin3) NNMT_PNMT_TEMT PF01234.17 EME67801.1 - 0.11 11.7 0.0 0.15 11.2 0.0 1.2 1 0 0 1 1 1 0 NNMT/PNMT/TEMT family Methyltransf_31 PF13847.6 EME67801.1 - 0.12 12.2 0.0 1.9 8.2 0.0 2.1 2 0 0 2 2 2 0 Methyltransferase domain Glucosamine_iso PF01182.20 EME67802.1 - 2.9e-21 76.4 0.0 6.2e-21 75.3 0.0 1.4 1 1 0 1 1 1 1 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase Sugar-bind PF04198.13 EME67802.1 - 0.006 15.8 0.1 1.1 8.3 0.1 2.2 2 0 0 2 2 2 2 Putative sugar-binding domain Glyco_hydro_4 PF02056.16 EME67803.1 - 1.7e-41 141.8 0.0 2.4e-41 141.3 0.0 1.2 1 0 0 1 1 1 1 Family 4 glycosyl hydrolase Glyco_hydro_4C PF11975.8 EME67803.1 - 3.2e-39 135.2 0.0 4.5e-39 134.7 0.0 1.2 1 0 0 1 1 1 1 Family 4 glycosyl hydrolase C-terminal domain PAS_9 PF13426.7 EME67804.1 - 2.5e-24 85.5 0.0 1.1e-23 83.5 0.0 2.1 2 0 0 2 2 2 1 PAS domain HATPase_c PF02518.26 EME67804.1 - 5e-24 85.0 0.0 1.7e-23 83.2 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 EME67804.1 - 1.6e-18 66.7 0.0 3.7e-18 65.6 0.0 1.6 1 0 0 1 1 1 1 PAS fold dCache_1 PF02743.18 EME67804.1 - 2.3e-15 57.1 0.0 2.1e-14 53.9 0.0 2.1 2 0 0 2 2 2 1 Cache domain PAS_4 PF08448.10 EME67804.1 - 2.7e-12 46.9 0.0 8.2e-12 45.4 0.0 1.9 1 0 0 1 1 1 1 PAS fold HisKA PF00512.25 EME67804.1 - 2.6e-10 40.2 0.1 7.3e-10 38.8 0.1 1.8 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_3 PF08447.12 EME67804.1 - 1.3e-09 38.2 0.0 3.3e-09 36.9 0.0 1.8 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 EME67804.1 - 1e-05 25.4 0.0 2.8e-05 24.0 0.0 1.8 1 0 0 1 1 1 1 PAS domain HATPase_c_5 PF14501.6 EME67804.1 - 0.00065 19.6 0.0 0.0013 18.7 0.0 1.4 1 0 0 1 1 1 1 GHKL domain Ntox28 PF15605.6 EME67804.1 - 0.11 12.7 0.0 0.31 11.3 0.0 1.7 1 0 0 1 1 1 0 Bacterial toxin 28 DUF5612 PF18462.1 EME67806.1 - 0.1 12.4 0.0 0.23 11.2 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF5612) Lactamase_B PF00753.27 EME67807.1 - 5.3e-25 88.6 2.4 6.4e-25 88.3 2.4 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 EME67807.1 - 0.017 14.6 0.0 0.022 14.3 0.0 1.2 1 0 0 1 1 1 0 Beta-lactamase superfamily domain Lysine_decarbox PF03641.14 EME67808.1 - 2.3e-31 108.6 0.0 4.5e-31 107.7 0.0 1.5 1 0 0 1 1 1 1 Possible lysine decarboxylase LDcluster4 PF18306.1 EME67808.1 - 9.6e-09 35.0 0.0 2.6e-08 33.6 0.0 1.7 2 0 0 2 2 2 1 SLOG cluster4 family Apolipoprotein PF01442.18 EME67809.1 - 0.0069 16.3 4.5 0.011 15.6 4.5 1.2 1 0 0 1 1 1 1 Apolipoprotein A1/A4/E domain Phasin PF05597.11 EME67809.1 - 0.039 13.9 3.1 0.049 13.6 2.0 1.6 1 1 0 1 1 1 0 Poly(hydroxyalcanoate) granule associated protein (phasin) DUF948 PF06103.11 EME67809.1 - 0.054 13.8 0.5 1.7 9.0 0.2 2.2 1 1 0 2 2 2 0 Bacterial protein of unknown function (DUF948) LapA_dom PF06305.11 EME67809.1 - 0.081 12.7 0.1 0.14 11.9 0.1 1.5 1 0 0 1 1 1 0 Lipopolysaccharide assembly protein A domain DUF5034 PF16437.5 EME67809.1 - 0.093 12.7 0.0 0.12 12.4 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF5034) LUC7 PF03194.15 EME67809.1 - 0.2 11.3 3.1 0.25 11.0 3.1 1.1 1 0 0 1 1 1 0 LUC7 N_terminus TRAF_BIRC3_bd PF16673.5 EME67809.1 - 0.34 10.7 3.8 4.8 7.1 0.2 2.8 2 2 1 3 3 3 0 TNF receptor-associated factor BIRC3 binding domain PspB PF06667.12 EME67809.1 - 0.43 10.7 2.8 6 7.0 0.4 2.3 1 1 1 2 2 2 0 Phage shock protein B RHH_1 PF01402.21 EME67809.1 - 4 7.5 9.0 1.9 8.6 0.5 3.3 3 0 0 3 3 3 0 Ribbon-helix-helix protein, copG family MFS_1 PF07690.16 EME67810.1 - 8.8e-29 100.5 48.8 2.7e-19 69.3 24.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily EAL PF00563.20 EME67811.1 - 2.3e-69 233.6 0.0 3.9e-69 232.8 0.0 1.4 1 0 0 1 1 1 1 EAL domain GGDEF PF00990.21 EME67811.1 - 1e-56 191.2 0.0 1.8e-56 190.3 0.0 1.4 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain CBS PF00571.28 EME67811.1 - 2.7e-35 120.6 1.1 1.3e-07 32.0 0.0 5.0 4 0 0 4 4 4 4 CBS domain PAS_9 PF13426.7 EME67811.1 - 3.5e-17 62.6 0.1 7.6e-17 61.5 0.1 1.6 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 EME67811.1 - 1.6e-11 44.2 0.0 3.6e-11 43.0 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 EME67811.1 - 2.4e-10 40.2 0.0 1.4e-09 37.8 0.0 2.3 2 0 0 2 2 2 1 PAS domain PAS_4 PF08448.10 EME67811.1 - 4.5e-10 39.8 0.0 1.2e-09 38.4 0.0 1.8 1 0 0 1 1 1 1 PAS fold PAS_3 PF08447.12 EME67811.1 - 3.8e-09 36.7 0.2 1.2e-08 35.1 0.2 2.0 1 0 0 1 1 1 1 PAS fold PAS_7 PF12860.7 EME67811.1 - 0.0052 16.9 0.1 0.34 11.1 0.0 2.7 2 0 0 2 2 2 1 PAS fold PAS_12 PF18095.1 EME67811.1 - 0.019 14.6 0.0 0.036 13.7 0.0 1.4 1 0 0 1 1 1 0 UPF0242 C-terminal PAS-like domain SUKH-4 PF14435.6 EME67811.1 - 0.067 13.2 0.1 0.21 11.6 0.1 1.8 1 0 0 1 1 1 0 SUKH-4 immunity protein Response_reg PF00072.24 EME67812.1 - 6.2e-09 36.0 0.1 9e-09 35.5 0.1 1.3 1 0 0 1 1 1 1 Response regulator receiver domain Hpt PF01627.23 EME67812.1 - 0.0003 21.0 0.0 0.00059 20.0 0.0 1.5 1 0 0 1 1 1 1 Hpt domain DLH PF01738.18 EME67813.1 - 2.2e-10 40.4 0.0 3.7e-10 39.7 0.0 1.3 1 0 0 1 1 1 1 Dienelactone hydrolase family Peptidase_S9 PF00326.21 EME67813.1 - 2.4e-09 37.0 0.0 0.00044 19.8 0.1 2.5 1 1 1 2 2 2 2 Prolyl oligopeptidase family Abhydrolase_3 PF07859.13 EME67813.1 - 0.00052 19.9 0.1 0.091 12.6 0.1 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 EME67813.1 - 0.007 17.0 9.2 0.034 14.7 9.2 1.8 1 1 0 1 1 1 1 Alpha/beta hydrolase family AXE1 PF05448.12 EME67813.1 - 0.057 12.1 0.1 0.087 11.5 0.1 1.4 1 1 0 1 1 1 0 Acetyl xylan esterase (AXE1) DUF2971 PF11185.8 EME67814.1 - 1.8e-10 41.8 0.0 3.9e-10 40.7 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF2971) NTP_transferase PF00483.23 EME67815.1 - 1.5e-66 224.5 0.0 1.9e-66 224.2 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 EME67815.1 - 2.4e-09 37.7 0.0 4.9e-09 36.8 0.0 1.6 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.24 EME67815.1 - 0.029 14.1 7.5 0.06 13.1 0.2 2.8 2 1 1 3 3 3 0 Bacterial transferase hexapeptide (six repeats) Fucokinase PF07959.12 EME67815.1 - 0.05 12.5 0.0 0.38 9.6 0.0 1.9 2 0 0 2 2 2 0 L-fucokinase Glyco_transf_5 PF08323.11 EME67816.1 - 1.9e-78 263.5 0.0 3.3e-78 262.7 0.0 1.4 1 0 0 1 1 1 1 Starch synthase catalytic domain Glycos_transf_1 PF00534.20 EME67816.1 - 1e-12 47.9 0.0 1.5e-12 47.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 EME67816.1 - 1.2e-10 42.0 1.0 2.7e-10 40.9 0.2 1.9 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.6 EME67816.1 - 2.7e-09 37.6 0.1 4.3e-09 36.9 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 EME67816.1 - 1.1e-06 28.7 0.1 2.2e-05 24.5 0.1 2.4 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glucokinase PF02685.16 EME67817.1 - 4.9e-107 357.6 0.1 5.5e-107 357.4 0.1 1.0 1 0 0 1 1 1 1 Glucokinase XhlA PF10779.9 EME67819.1 - 0.074 13.3 3.6 21 5.4 0.0 3.0 3 0 0 3 3 3 0 Haemolysin XhlA Vac_Fusion PF02346.16 EME67819.1 - 0.12 12.0 0.0 3.9 7.2 0.0 2.1 2 0 0 2 2 2 0 Chordopoxvirus multifunctional envelope protein A27 GATase_5 PF13507.6 EME67820.1 - 4.1e-39 134.2 0.0 5.2e-39 133.9 0.0 1.1 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase_3 PF07685.14 EME67820.1 - 2.3e-08 33.9 0.0 3e-08 33.5 0.0 1.5 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.24 EME67820.1 - 6.2e-07 29.4 0.0 1e-06 28.7 0.0 1.3 1 0 0 1 1 1 1 DJ-1/PfpI family GATase PF00117.28 EME67820.1 - 0.0014 18.5 0.0 0.0018 18.1 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase class-I AIRS_C PF02769.22 EME67821.1 - 4.9e-51 172.9 6.2 7.3e-33 113.9 0.5 2.4 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain AIRS PF00586.24 EME67821.1 - 5.5e-49 164.8 4.0 1.3e-23 83.5 0.2 2.5 2 0 0 2 2 2 2 AIR synthase related protein, N-terminal domain FGAR-AT_linker PF18072.1 EME67821.1 - 5.6e-14 52.4 0.0 1.3e-13 51.3 0.0 1.6 1 0 0 1 1 1 1 Formylglycinamide ribonucleotide amidotransferase linker domain BolA PF01722.18 EME67822.1 - 5.8e-14 52.1 0.0 6.6e-14 51.9 0.0 1.1 1 0 0 1 1 1 1 BolA-like protein Kdo PF06293.14 EME67822.1 - 0.083 12.2 0.0 0.091 12.1 0.0 1.1 1 0 0 1 1 1 0 Lipopolysaccharide kinase (Kdo/WaaP) family Glutaredoxin PF00462.24 EME67823.1 - 2.1e-19 69.5 0.0 3.8e-19 68.7 0.0 1.4 1 0 0 1 1 1 1 Glutaredoxin Response_reg PF00072.24 EME67824.1 - 2.4e-07 30.9 0.0 2.9e-07 30.6 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain GGDEF PF00990.21 EME67827.1 - 2.4e-41 141.2 0.0 1.2e-40 138.9 0.0 2.0 2 0 0 2 2 2 1 Diguanylate cyclase, GGDEF domain PAS_7 PF12860.7 EME67827.1 - 3.1e-41 140.2 0.1 2.6e-32 111.4 0.0 2.9 3 0 0 3 3 3 2 PAS fold PAS_4 PF08448.10 EME67827.1 - 1.1e-18 67.4 0.1 5.2e-11 42.8 0.0 3.0 3 0 0 3 3 3 2 PAS fold PAS_9 PF13426.7 EME67827.1 - 6.3e-13 48.9 0.0 5.5e-10 39.4 0.0 3.5 3 1 0 3 3 3 1 PAS domain PAS PF00989.25 EME67827.1 - 1.5e-12 47.5 0.1 3.7e-09 36.6 0.0 3.1 3 0 0 3 3 3 2 PAS fold PAS_8 PF13188.7 EME67827.1 - 1e-08 35.0 1.7 0.0001 22.2 0.1 3.7 4 1 0 4 4 4 2 PAS domain Hemerythrin PF01814.23 EME67827.1 - 2.4e-08 34.6 0.9 2.4e-08 34.6 0.9 2.2 2 0 0 2 2 2 1 Hemerythrin HHE cation binding domain MLTR_LBD PF17765.1 EME67827.1 - 0.03 14.4 3.2 0.26 11.4 0.0 3.2 3 0 0 3 3 3 0 MmyB-like transcription regulator ligand binding domain Bac_DNA_binding PF00216.21 EME67830.1 - 3.6e-33 113.6 0.1 4e-33 113.5 0.1 1.0 1 0 0 1 1 1 1 Bacterial DNA-binding protein HU-HIG PF18291.1 EME67830.1 - 8.2e-08 32.4 0.0 8.9e-08 32.3 0.0 1.0 1 0 0 1 1 1 1 HU domain fused to wHTH, Ig, or Glycine-rich motif HU-CCDC81_euk_2 PF18289.1 EME67830.1 - 0.0021 18.2 0.0 0.003 17.7 0.0 1.2 1 0 0 1 1 1 1 CCDC81 eukaryotic HU domain 2 DUF2267 PF10025.9 EME67830.1 - 0.0067 16.7 0.1 0.0086 16.4 0.1 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2267) HU-CCDC81_euk_1 PF14908.6 EME67830.1 - 0.018 15.2 0.0 0.02 15.0 0.0 1.1 1 0 0 1 1 1 0 CCDC81 eukaryotic HU domain 1 HU-CCDC81_bac_2 PF18175.1 EME67830.1 - 0.056 13.3 0.0 0.086 12.7 0.0 1.2 1 0 0 1 1 1 0 CCDC81-like prokaryotic HU domain 2 HU-DNA_bdg PF14848.6 EME67830.1 - 0.057 13.4 0.0 0.087 12.8 0.0 1.4 1 1 0 1 1 1 0 DNA-binding domain ROS_MUCR PF05443.11 EME67831.1 - 9.2e-41 138.8 0.1 1.4e-40 138.3 0.1 1.2 1 0 0 1 1 1 1 ROS/MUCR transcriptional regulator protein rve_3 PF13683.6 EME67832.1 - 1.1e-31 108.3 0.1 2.2e-31 107.4 0.1 1.5 1 0 0 1 1 1 1 Integrase core domain rve PF00665.26 EME67832.1 - 2.6e-20 72.8 0.0 4e-20 72.2 0.0 1.3 1 0 0 1 1 1 1 Integrase core domain rve_2 PF13333.6 EME67832.1 - 6.5e-06 26.2 0.0 1e-05 25.6 0.0 1.3 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 EME67832.1 - 0.16 12.2 0.0 0.21 11.8 0.0 1.2 1 0 0 1 1 1 0 DDE domain DUF4096 PF13340.6 EME67833.1 - 3e-26 91.4 1.8 4.2e-26 91.0 1.8 1.2 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) TSC22 PF01166.18 EME67834.1 - 0.044 14.1 0.2 0.053 13.8 0.2 1.1 1 0 0 1 1 1 0 TSC-22/dip/bun family HTH_Tnp_1 PF01527.20 EME67834.1 - 0.06 13.7 0.5 0.081 13.3 0.5 1.2 1 0 0 1 1 1 0 Transposase Transposase_20 PF02371.16 EME67835.1 - 1.1e-13 51.3 0.0 2e-13 50.4 0.0 1.5 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family DEDD_Tnp_IS110 PF01548.17 EME67835.1 - 4.7e-12 46.0 0.0 7.7e-12 45.4 0.0 1.4 1 0 0 1 1 1 1 Transposase Transposase_20 PF02371.16 EME67836.1 - 0.00022 21.5 0.6 0.00035 20.8 0.1 1.6 2 0 0 2 2 2 1 Transposase IS116/IS110/IS902 family Roc PF08477.13 EME67836.1 - 0.12 12.6 0.0 0.13 12.5 0.0 1.1 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase DUF2384 PF09722.10 EME67837.1 - 9.4e-08 32.0 0.0 1.5e-07 31.3 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2384) HlyD_3 PF13437.6 EME67838.1 - 3.1e-11 43.9 0.0 3.7e-10 40.4 0.0 2.2 2 0 0 2 2 2 1 HlyD family secretion protein HlyD_D23 PF16576.5 EME67838.1 - 6.6e-08 32.0 0.0 1.5e-07 30.8 0.0 1.6 1 1 0 1 1 1 1 Barrel-sandwich domain of CusB or HlyD membrane-fusion Biotin_lipoyl_2 PF13533.6 EME67838.1 - 4.8e-06 26.3 0.0 4.7e-05 23.1 0.0 2.4 2 0 0 2 2 2 1 Biotin-lipoyl like TPR_2 PF07719.17 EME67839.1 - 3.3e-05 23.6 0.3 0.00055 19.9 0.4 2.2 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_16 PF13432.6 EME67839.1 - 0.0013 19.3 0.1 0.002 18.8 0.1 1.3 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_1 PF00515.28 EME67839.1 - 0.0014 18.4 0.1 0.011 15.5 0.4 2.1 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_7 PF13176.6 EME67839.1 - 0.0045 16.9 0.1 1.2 9.4 0.1 2.3 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_19 PF14559.6 EME67839.1 - 0.047 14.2 0.0 11 6.6 0.0 2.1 2 0 0 2 2 2 0 Tetratricopeptide repeat DUF29 PF01724.16 EME67841.1 - 0.00085 19.6 0.0 0.0014 18.9 0.0 1.3 1 1 0 1 1 1 1 Domain of unknown function DUF29 Response_reg PF00072.24 EME67842.1 - 1.5e-05 25.1 0.1 1.5e-05 25.1 0.1 1.0 1 0 0 1 1 1 1 Response regulator receiver domain 3HCDH_RFF PF18321.1 EME67842.1 - 0.14 12.6 0.0 0.2 12.1 0.0 1.3 1 0 0 1 1 1 0 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain MgtC PF02308.16 EME67843.1 - 5.6e-34 117.1 12.7 7.6e-34 116.7 12.7 1.2 1 0 0 1 1 1 1 MgtC family HATPase_c PF02518.26 EME67844.1 - 3.5e-26 91.9 0.0 3e-25 88.9 0.0 2.4 3 0 0 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHASE PF03924.13 EME67844.1 - 7.1e-16 58.7 0.1 3.4e-15 56.5 0.1 2.0 1 1 0 1 1 1 1 CHASE domain HisKA PF00512.25 EME67844.1 - 8.5e-11 41.7 0.1 3e-10 40.0 0.0 2.0 1 1 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS PF00989.25 EME67844.1 - 2.9e-10 40.1 0.0 7e-10 38.9 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.10 EME67844.1 - 3.4e-09 36.9 0.3 2e-08 34.4 0.3 2.4 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 EME67844.1 - 5.2e-08 32.7 0.0 1.6e-07 31.2 0.0 1.9 1 0 0 1 1 1 1 PAS domain PAS_9 PF13426.7 EME67844.1 - 1.9e-07 31.3 0.0 7.4e-07 29.4 0.0 2.0 2 0 0 2 2 2 1 PAS domain HATPase_c_5 PF14501.6 EME67844.1 - 3.3e-05 23.7 0.0 5.9e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 GHKL domain PAS_3 PF08447.12 EME67844.1 - 0.0035 17.6 0.0 0.021 15.1 0.0 2.4 2 0 0 2 2 2 1 PAS fold HATPase_c_3 PF13589.6 EME67844.1 - 0.0036 17.1 0.0 0.011 15.6 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 EME67844.1 - 0.031 14.2 0.0 0.3 11.0 0.0 2.5 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain ABC-3 PF00950.17 EME67846.1 - 1.6e-70 237.6 24.0 1.8e-70 237.4 24.0 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.18 EME67846.1 - 1.5e-07 30.7 25.8 1.5e-07 30.7 25.8 1.6 1 1 0 1 1 1 1 FecCD transport family CYYR1 PF10873.8 EME67846.1 - 8.7 6.8 7.4 0.25 11.8 0.9 1.7 2 0 0 2 2 2 0 Cysteine and tyrosine-rich protein 1 ABC_tran PF00005.27 EME67847.1 - 7.5e-25 88.0 0.0 1.1e-24 87.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 EME67847.1 - 3.6e-11 43.4 0.5 5.5e-05 23.1 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_30 PF13604.6 EME67847.1 - 0.00069 19.4 0.2 0.0011 18.7 0.2 1.3 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 EME67847.1 - 0.0017 17.9 0.0 0.021 14.3 0.0 2.0 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 EME67847.1 - 0.0036 17.7 0.5 0.0058 17.0 0.5 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 EME67847.1 - 0.0036 17.6 0.0 0.012 15.8 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 EME67847.1 - 0.0062 16.3 0.0 0.011 15.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_27 PF13514.6 EME67847.1 - 0.014 15.0 0.0 0.021 14.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 EME67847.1 - 0.029 14.3 0.0 0.08 12.8 0.0 1.8 2 0 0 2 2 2 0 RsgA GTPase SbcCD_C PF13558.6 EME67847.1 - 0.082 13.2 0.0 1.6 9.0 0.0 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.6 EME67847.1 - 0.094 13.2 0.0 0.13 12.7 0.0 1.1 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 EME67847.1 - 0.11 12.2 0.0 0.16 11.7 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain IstB_IS21 PF01695.17 EME67847.1 - 0.14 11.8 0.1 4.9 6.8 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein ABC_ATPase PF09818.9 EME67847.1 - 0.19 10.4 0.4 6.8 5.4 0.0 2.2 2 0 0 2 2 2 0 Predicted ATPase of the ABC class NB-ARC PF00931.22 EME67847.1 - 0.25 10.5 0.1 0.5 9.5 0.1 1.5 1 1 0 1 1 1 0 NB-ARC domain FUR PF01475.19 EME67848.1 - 9.7e-10 38.6 0.0 2.3e-09 37.4 0.0 1.6 2 0 0 2 2 2 1 Ferric uptake regulator family PadR PF03551.14 EME67848.1 - 0.002 18.0 0.0 0.0039 17.1 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family ZnuA PF01297.17 EME67849.1 - 1.6e-61 208.0 0.0 1.8e-61 207.8 0.0 1.0 1 0 0 1 1 1 1 Zinc-uptake complex component A periplasmic PRA-CH PF01502.18 EME67850.1 - 1.5e-33 114.4 0.3 2.1e-33 114.0 0.3 1.2 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase cobW PF02492.19 EME67851.1 - 5.4e-47 159.7 0.0 6.9e-47 159.3 0.0 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CobW_C PF07683.14 EME67851.1 - 1.3e-19 69.9 0.0 2.3e-19 69.1 0.0 1.4 1 0 0 1 1 1 1 Cobalamin synthesis protein cobW C-terminal domain RsgA_GTPase PF03193.16 EME67851.1 - 0.012 15.5 0.1 0.51 10.2 0.0 2.2 2 0 0 2 2 2 0 RsgA GTPase AAA_22 PF13401.6 EME67851.1 - 0.019 15.2 0.1 0.055 13.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 EME67851.1 - 0.02 15.1 0.1 0.053 13.7 0.1 1.7 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 EME67851.1 - 0.032 14.5 0.1 0.23 11.7 0.0 2.3 2 0 0 2 2 2 0 AAA domain TsaE PF02367.17 EME67851.1 - 0.051 13.6 0.1 0.16 12.0 0.1 1.8 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE SRP54 PF00448.22 EME67851.1 - 0.054 13.1 0.5 6.7 6.3 0.1 2.3 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_16 PF13191.6 EME67851.1 - 0.1 13.0 0.6 0.24 11.8 0.6 1.9 1 1 0 1 1 1 0 AAA ATPase domain GTP_EFTU PF00009.27 EME67851.1 - 0.11 12.1 0.1 6.9 6.1 0.0 2.2 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain FixO PF02433.15 EME67852.1 - 0.12 11.8 0.0 0.12 11.8 0.0 1.1 1 0 0 1 1 1 0 Cytochrome C oxidase, mono-heme subunit/FixO Cytochrom_C PF00034.21 EME67853.1 - 5.9e-16 59.4 1.7 4.5e-07 30.9 0.1 3.3 2 2 0 2 2 2 2 Cytochrome c Cytochrome_CBB3 PF13442.6 EME67853.1 - 2.9e-13 49.9 0.3 5.6e-07 29.8 0.0 2.3 2 0 0 2 2 2 2 Cytochrome C oxidase, cbb3-type, subunit III Paired_CXXCH_1 PF09699.10 EME67853.1 - 0.027 14.2 0.2 8.3 6.2 0.0 2.3 2 0 0 2 2 2 0 Doubled CXXCH motif (Paired_CXXCH_1) Cytochrome_C7 PF14522.6 EME67853.1 - 0.043 13.8 0.0 4.6 7.3 0.0 2.3 2 0 0 2 2 2 0 Cytochrome c7 and related cytochrome c DUF1924 PF09086.11 EME67853.1 - 0.057 13.8 0.1 3 8.3 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1924) AMP-binding PF00501.28 EME67854.1 - 5.5e-93 311.8 0.2 6.8e-93 311.6 0.2 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 EME67854.1 - 2.1e-21 76.7 0.1 6e-21 75.2 0.1 1.8 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Meth_synt_2 PF01717.18 EME67854.1 - 0.0068 15.7 0.0 0.013 14.8 0.0 1.4 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain ETF PF01012.21 EME67855.1 - 1.6e-50 171.5 3.8 1.9e-50 171.3 3.8 1.0 1 0 0 1 1 1 1 Electron transfer flavoprotein domain Response_reg PF00072.24 EME67856.1 - 1.2e-47 160.7 0.8 2.6e-24 85.5 0.3 2.9 3 0 0 3 3 3 2 Response regulator receiver domain HATPase_c PF02518.26 EME67856.1 - 6e-30 104.0 0.1 1.1e-29 103.2 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 EME67856.1 - 1.9e-20 72.7 0.1 1.9e-20 72.7 0.1 2.6 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS PF00989.25 EME67856.1 - 1.9e-15 56.8 0.0 5.1e-15 55.5 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 EME67856.1 - 2.7e-12 46.9 0.0 9.4e-12 45.1 0.0 2.0 1 0 0 1 1 1 1 PAS domain Hpt PF01627.23 EME67856.1 - 5.2e-10 39.4 1.3 5.2e-10 39.4 1.3 4.0 4 0 0 4 4 4 1 Hpt domain PAS_4 PF08448.10 EME67856.1 - 5.5e-10 39.5 0.1 1.9e-09 37.7 0.1 2.1 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 EME67856.1 - 8.8e-10 38.4 0.0 3.3e-09 36.5 0.0 2.0 1 0 0 1 1 1 1 PAS domain PAS_7 PF12860.7 EME67856.1 - 4.2e-06 26.9 0.0 2e-05 24.7 0.0 2.3 1 0 0 1 1 1 1 PAS fold Oxidored_nitro PF00148.19 EME67856.1 - 0.0028 16.5 0.3 0.0028 16.5 0.3 1.7 2 0 0 2 2 2 1 Nitrogenase component 1 type Oxidoreductase DUF5082 PF16888.5 EME67856.1 - 0.078 13.3 1.0 0.19 12.0 1.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF5082) HATPase_c_3 PF13589.6 EME67856.1 - 0.086 12.7 0.0 0.21 11.4 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.12 EME67856.1 - 0.13 12.6 0.0 0.37 11.1 0.0 1.8 1 0 0 1 1 1 0 PAS fold BRCT_3 PF18428.1 EME67856.1 - 0.23 11.5 0.0 3.1 7.9 0.0 2.4 2 0 0 2 2 2 0 BRCA1 C Terminus (BRCT) domain CheB_methylest PF01339.17 EME67857.1 - 2.3e-45 154.3 0.0 3.4e-45 153.8 0.0 1.2 1 0 0 1 1 1 1 CheB methylesterase CheR PF01739.18 EME67857.1 - 2.6e-45 154.3 0.0 3.8e-45 153.8 0.0 1.2 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain CheR_N PF03705.15 EME67857.1 - 1.2e-12 47.3 0.2 2.3e-12 46.5 0.2 1.5 1 0 0 1 1 1 1 CheR methyltransferase, all-alpha domain Methyltransf_23 PF13489.6 EME67857.1 - 0.00061 19.7 0.0 0.0031 17.4 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 EME67857.1 - 0.00079 20.1 0.0 1.9 9.2 0.0 3.4 3 0 0 3 3 3 1 Methyltransferase domain Methyltransf_11 PF08241.12 EME67857.1 - 0.00094 19.8 0.1 0.096 13.3 0.0 3.1 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 EME67857.1 - 0.0039 17.9 0.0 0.088 13.6 0.0 2.8 2 1 0 2 2 2 1 Methyltransferase domain GAF_2 PF13185.6 EME67858.1 - 9.9e-19 68.0 0.6 2.9e-18 66.5 0.0 2.1 3 0 0 3 3 3 1 GAF domain 4HB_MCP_1 PF12729.7 EME67858.1 - 3.2e-18 65.9 0.3 3.2e-18 65.9 0.3 2.0 2 0 0 2 2 2 1 Four helix bundle sensory module for signal transduction PAS PF00989.25 EME67858.1 - 4.3e-10 39.6 0.1 2e-09 37.4 0.0 2.2 2 1 0 2 2 2 1 PAS fold PAS_8 PF13188.7 EME67858.1 - 7.5e-10 38.6 0.0 2.3e-09 37.1 0.0 1.8 1 0 0 1 1 1 1 PAS domain PAS_9 PF13426.7 EME67858.1 - 3.5e-08 33.6 0.0 3.8e-07 30.3 0.0 2.8 2 1 0 2 2 2 1 PAS domain GAF PF01590.26 EME67858.1 - 2.7e-07 31.3 0.0 5.9e-07 30.2 0.0 1.6 1 0 0 1 1 1 1 GAF domain PAS_4 PF08448.10 EME67858.1 - 3.4e-06 27.3 1.5 2e-05 24.8 0.0 3.0 3 0 0 3 3 3 1 PAS fold HAMP PF00672.25 EME67858.1 - 7e-06 26.3 0.1 2.4e-05 24.6 0.1 2.0 1 0 0 1 1 1 1 HAMP domain GAF_3 PF13492.6 EME67858.1 - 5.7e-05 23.5 0.0 0.00013 22.3 0.0 1.7 1 0 0 1 1 1 1 GAF domain TarH PF02203.15 EME67858.1 - 0.035 14.0 0.8 0.035 14.0 0.8 2.8 4 0 0 4 4 4 0 Tar ligand binding domain homologue DUF16 PF01519.16 EME67858.1 - 0.046 14.2 0.8 0.12 12.9 0.8 1.7 1 0 0 1 1 1 0 Protein of unknown function DUF16 PAS_7 PF12860.7 EME67858.1 - 0.089 13.0 0.1 2.7 8.2 0.0 2.8 2 0 0 2 2 2 0 PAS fold PAS_3 PF08447.12 EME67858.1 - 0.096 13.0 0.0 1.8 8.9 0.0 2.9 1 1 0 1 1 1 0 PAS fold Response_reg PF00072.24 EME67859.1 - 8.3e-47 158.0 4.1 9.9e-28 96.6 1.2 2.6 2 0 0 2 2 2 2 Response regulator receiver domain PAS_9 PF13426.7 EME67859.1 - 2.6e-33 114.4 0.0 2.3e-09 37.4 0.0 3.6 3 0 0 3 3 3 3 PAS domain HATPase_c PF02518.26 EME67859.1 - 4.4e-27 94.8 0.0 1.1e-26 93.5 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 EME67859.1 - 3.2e-24 85.1 0.0 3.4e-08 33.5 0.0 3.6 3 0 0 3 3 3 3 PAS fold HisKA PF00512.25 EME67859.1 - 2.9e-21 75.3 7.9 5.6e-21 74.4 0.0 4.5 4 0 0 4 4 4 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.7 EME67859.1 - 1.8e-16 59.7 0.1 2.7e-06 27.2 0.0 4.0 3 0 0 3 3 3 3 PAS domain PAS_4 PF08448.10 EME67859.1 - 4.1e-15 56.0 0.7 3e-05 24.2 0.0 4.0 3 0 0 3 3 3 3 PAS fold PAS_3 PF08447.12 EME67859.1 - 2e-09 37.6 0.0 0.0015 18.8 0.0 3.8 3 0 0 3 3 3 2 PAS fold Hpt PF01627.23 EME67859.1 - 1.7e-07 31.4 5.3 1.8e-07 31.3 1.7 3.0 2 0 0 2 2 2 1 Hpt domain HAMP PF00672.25 EME67859.1 - 2.4e-07 31.0 2.7 3.9e-07 30.4 0.4 2.8 2 0 0 2 2 2 1 HAMP domain GAF_2 PF13185.6 EME67859.1 - 3.2e-07 30.7 0.7 2.1e-06 28.1 0.2 2.7 2 0 0 2 2 2 1 GAF domain DUF4351 PF14261.6 EME67860.1 - 0.0099 15.9 0.7 0.46 10.6 0.7 2.9 1 1 0 1 1 1 1 Domain of unknown function (DUF4351) HTH_26 PF13443.6 EME67860.1 - 0.032 14.7 0.1 0.49 10.9 0.1 2.0 1 1 1 2 2 2 0 Cro/C1-type HTH DNA-binding domain FluMu_N PF17891.1 EME67860.1 - 0.14 12.0 4.0 11 5.8 0.2 3.2 1 1 3 4 4 4 0 Mu-like prophage FluMu N-terminal domain Extensin-like_C PF06904.12 EME67863.1 - 2.7e-55 187.2 0.2 3.5e-55 186.8 0.2 1.1 1 0 0 1 1 1 1 Extensin-like protein C-terminus YbjQ_1 PF01906.17 EME67864.1 - 3.4e-38 130.5 3.9 3.7e-38 130.3 3.9 1.0 1 0 0 1 1 1 1 Putative heavy-metal-binding DUF4156 PF13698.6 EME67864.1 - 0.0057 17.0 0.1 0.0084 16.4 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4156) MoCF_biosynth PF00994.24 EME67865.1 - 2.3e-29 101.9 0.1 2.7e-29 101.7 0.1 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain HisKA_2 PF07568.12 EME67866.1 - 1.5e-25 89.1 0.4 3.2e-25 88.0 0.4 1.6 1 0 0 1 1 1 1 Histidine kinase dCache_1 PF02743.18 EME67866.1 - 3e-10 40.3 0.0 5.6e-10 39.4 0.0 1.4 1 0 0 1 1 1 1 Cache domain HATPase_c PF02518.26 EME67866.1 - 5.3e-08 33.4 0.1 6e-07 30.0 0.1 2.4 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HWE_HK PF07536.14 EME67866.1 - 3.7e-07 30.8 0.1 1.2e-06 29.1 0.1 1.9 1 0 0 1 1 1 1 HWE histidine kinase HATPase_c_2 PF13581.6 EME67866.1 - 8.4e-05 22.5 0.1 0.00041 20.3 0.1 2.1 1 1 0 1 1 1 1 Histidine kinase-like ATPase domain DUF3754 PF12576.8 EME67866.1 - 0.051 13.5 0.2 0.14 12.1 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3754) SPOB_a PF14689.6 EME67866.1 - 0.16 11.7 0.2 0.31 10.8 0.2 1.4 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain CobT_C PF11775.8 EME67867.1 - 5.3e-105 349.9 0.5 1.8e-104 348.1 0.1 2.0 2 0 0 2 2 2 1 Cobalamin biosynthesis protein CobT VWA domain CobT PF06213.12 EME67867.1 - 9e-78 261.4 7.8 1.5e-77 260.7 7.8 1.3 1 0 0 1 1 1 1 Cobalamin biosynthesis protein CobT VWA_2 PF13519.6 EME67867.1 - 0.022 15.4 0.0 1.4 9.6 0.0 2.9 3 0 0 3 3 3 0 von Willebrand factor type A domain VWA PF00092.28 EME67867.1 - 0.11 12.7 0.0 10 6.4 0.0 2.3 2 0 0 2 2 2 0 von Willebrand factor type A domain Paf1 PF03985.13 EME67867.1 - 8 5.3 7.6 13 4.7 7.6 1.3 1 0 0 1 1 1 0 Paf1 CobS_N PF12556.8 EME67868.1 - 9.1e-18 63.7 0.4 1.8e-17 62.8 0.4 1.5 1 0 0 1 1 1 1 Cobaltochelatase CobS subunit N terminal AAA_5 PF07728.14 EME67868.1 - 6.5e-12 45.6 0.0 1.2e-11 44.8 0.0 1.4 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 EME67868.1 - 0.00029 21.2 0.0 0.00045 20.7 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 EME67868.1 - 0.002 18.3 0.0 0.0041 17.3 0.0 1.5 1 1 0 1 1 1 1 AAA domain CbbQ_C PF08406.10 EME67868.1 - 0.0027 17.9 0.0 0.0057 16.9 0.0 1.5 1 0 0 1 1 1 1 CbbQ/NirQ/NorQ C-terminal AAA_3 PF07726.11 EME67868.1 - 0.004 17.0 0.0 0.0071 16.2 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 EME67868.1 - 0.023 15.3 0.0 0.038 14.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 EME67868.1 - 0.027 14.8 0.0 0.082 13.3 0.0 1.7 1 1 1 2 2 2 0 AAA ATPase domain AAA_7 PF12775.7 EME67868.1 - 0.11 12.0 0.0 0.18 11.3 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_14 PF13173.6 EME67868.1 - 0.13 12.3 0.0 0.21 11.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain DnaJ PF00226.31 EME67869.1 - 1.1e-13 51.1 0.3 2.4e-13 50.0 0.3 1.5 1 0 0 1 1 1 1 DnaJ domain BolA PF01722.18 EME67870.1 - 2.8e-32 110.8 0.3 3.2e-32 110.6 0.3 1.0 1 0 0 1 1 1 1 BolA-like protein TPR_2 PF07719.17 EME67871.1 - 2.7e-14 52.0 7.3 0.0014 18.5 0.1 5.2 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_9 PF13371.6 EME67871.1 - 4.9e-11 42.6 17.2 2.1e-05 24.6 0.6 4.4 1 1 4 5 5 5 3 Tetratricopeptide repeat TPR_16 PF13432.6 EME67871.1 - 1.2e-09 38.6 15.0 0.0025 18.4 2.5 4.2 1 1 3 4 4 4 4 Tetratricopeptide repeat TPR_1 PF00515.28 EME67871.1 - 4.3e-09 35.8 3.1 0.0022 17.7 0.0 4.6 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_17 PF13431.6 EME67871.1 - 1.6e-05 25.0 1.0 4.4 7.9 0.0 5.0 4 1 1 5 5 5 1 Tetratricopeptide repeat TPR_8 PF13181.6 EME67871.1 - 2.7e-05 24.0 1.9 0.29 11.4 0.0 4.6 5 0 0 5 5 5 1 Tetratricopeptide repeat TPR_19 PF14559.6 EME67871.1 - 5.8e-05 23.5 10.4 0.0023 18.4 0.5 3.6 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_12 PF13424.6 EME67871.1 - 0.00056 20.1 14.2 0.43 10.9 4.5 4.0 4 0 0 4 4 4 2 Tetratricopeptide repeat ANAPC3 PF12895.7 EME67871.1 - 0.0056 16.9 0.7 0.85 9.9 0.0 2.8 2 1 1 3 3 3 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_6 PF13174.6 EME67871.1 - 0.0087 16.6 10.5 2.8 8.8 0.0 4.6 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_11 PF13414.6 EME67871.1 - 0.021 14.5 8.5 0.15 11.7 0.0 4.2 5 0 0 5 5 5 0 TPR repeat DUF4123 PF13503.6 EME67871.1 - 0.035 14.5 3.3 0.048 14.1 1.8 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4123) TPR_7 PF13176.6 EME67871.1 - 0.042 13.9 3.1 4.6 7.5 0.1 3.9 4 0 0 4 4 4 0 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 EME67871.1 - 0.051 13.6 1.3 6.9 6.8 0.2 3.0 2 1 1 3 3 3 0 Fis1 C-terminal tetratricopeptide repeat TPR_14 PF13428.6 EME67871.1 - 0.14 13.1 21.9 0.55 11.2 0.9 4.8 1 1 4 5 5 5 0 Tetratricopeptide repeat TPR_20 PF14561.6 EME67871.1 - 0.18 12.1 7.0 12 6.4 2.3 3.3 2 1 0 2 2 2 0 Tetratricopeptide repeat TPR_10 PF13374.6 EME67871.1 - 9.5 6.2 7.5 31 4.6 0.6 3.7 3 0 0 3 3 3 0 Tetratricopeptide repeat Epimerase PF01370.21 EME67872.1 - 0.0046 16.4 0.0 3.1 7.2 0.0 2.9 2 1 0 2 2 2 2 NAD dependent epimerase/dehydratase family CSD PF00313.22 EME67874.1 - 4.1e-37 125.9 0.4 5.3e-20 71.0 0.2 2.1 2 0 0 2 2 2 2 'Cold-shock' DNA-binding domain OB_RNB PF08206.11 EME67874.1 - 2e-10 40.2 0.5 4.7e-05 23.0 0.2 2.4 2 0 0 2 2 2 2 Ribonuclease B OB domain PAP2 PF01569.21 EME67875.1 - 4.9e-19 68.4 0.6 4.9e-19 68.4 0.6 1.8 2 0 0 2 2 2 1 PAP2 superfamily PAP2_3 PF14378.6 EME67875.1 - 4.7e-11 42.7 3.0 8.4e-11 41.9 3.0 1.5 1 1 0 1 1 1 1 PAP2 superfamily LptF_LptG PF03739.14 EME67876.1 - 1.1e-56 192.2 4.4 1.4e-56 191.9 4.4 1.0 1 0 0 1 1 1 1 Lipopolysaccharide export system permease LptF/LptG DUF1129 PF06570.11 EME67876.1 - 2.4 7.6 6.4 2.6 7.5 0.3 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF1129) Cob_adeno_trans PF01923.18 EME67877.1 - 7.7e-61 205.0 0.0 9.7e-61 204.7 0.0 1.0 1 0 0 1 1 1 1 Cobalamin adenosyltransferase ETF PF01012.21 EME67878.1 - 2.5e-19 69.9 0.9 2.8e-19 69.7 0.9 1.1 1 0 0 1 1 1 1 Electron transfer flavoprotein domain MethyltransfD12 PF02086.15 EME67879.1 - 2.7e-13 50.2 0.0 6e-13 49.1 0.0 1.6 1 1 0 1 1 1 1 D12 class N6 adenine-specific DNA methyltransferase Dam PF05869.11 EME67879.1 - 1.3e-09 37.9 1.8 4.2e-08 32.9 2.2 2.2 2 0 0 2 2 2 1 DNA N-6-adenine-methyltransferase (Dam) FixQ PF05545.11 EME67880.1 - 0.1 12.6 0.2 0.1 12.6 0.2 1.9 2 0 0 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ DUF4217 PF13959.6 EME67881.1 - 0.069 13.4 0.0 0.13 12.5 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4217) DUF2563 PF10817.8 EME67881.1 - 0.14 12.8 0.0 0.24 12.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2563) Resolvase PF00239.21 EME67882.1 - 2.9e-37 128.0 0.7 4e-37 127.6 0.7 1.1 1 0 0 1 1 1 1 Resolvase, N terminal domain HTH_7 PF02796.15 EME67882.1 - 2.1e-07 30.9 0.0 4.8e-07 29.7 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_38 PF13936.6 EME67882.1 - 7.8e-05 22.4 0.2 0.00062 19.5 0.1 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.6 EME67882.1 - 0.0022 17.7 0.0 0.0051 16.6 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.6 EME67882.1 - 0.0026 17.7 0.5 0.039 14.0 0.0 2.3 1 1 1 2 2 2 1 Winged helix-turn helix HTH_28 PF13518.6 EME67882.1 - 0.0055 16.8 1.4 0.014 15.5 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.19 EME67882.1 - 0.0071 16.2 0.0 0.14 12.1 0.0 2.3 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB DUF4350 PF14258.6 EME67882.1 - 0.025 15.0 0.0 2.2 8.8 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4350) HTH_IclR PF09339.10 EME67882.1 - 0.035 13.9 0.0 0.11 12.3 0.0 1.8 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_22 PF13309.6 EME67882.1 - 0.054 13.6 0.3 0.51 10.5 0.1 2.4 2 1 0 2 2 2 0 HTH domain DUF4325 PF14213.6 EME67883.1 - 1e-10 41.2 0.0 1.6e-10 40.5 0.0 1.3 1 0 0 1 1 1 1 STAS-like domain of unknown function (DUF4325) PIN PF01850.21 EME67884.1 - 7.7e-08 32.9 0.0 1e-07 32.5 0.0 1.1 1 0 0 1 1 1 1 PIN domain DUF5615 PF18480.1 EME67884.1 - 4.4e-05 23.1 0.1 9.6e-05 22.1 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF5615) IMS PF00817.20 EME67885.1 - 5.6e-35 120.6 0.0 1.1e-34 119.6 0.0 1.5 2 0 0 2 2 2 1 impB/mucB/samB family DUF4113 PF13438.6 EME67885.1 - 3.1e-21 75.2 0.0 8e-21 73.9 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4113) IMS_C PF11799.8 EME67885.1 - 1.5e-09 38.6 0.0 6.4e-09 36.5 0.0 1.9 2 0 0 2 2 2 1 impB/mucB/samB family C-terminal domain IMS_HHH PF11798.8 EME67885.1 - 0.016 15.5 0.0 0.046 14.1 0.0 1.8 1 0 0 1 1 1 0 IMS family HHH motif Peptidase_S24 PF00717.23 EME67886.1 - 1.1e-15 57.4 0.0 1.5e-15 56.9 0.0 1.2 1 0 0 1 1 1 1 Peptidase S24-like RNA_pol_A_bac PF01000.26 EME67886.1 - 0.17 12.3 0.0 0.2 12.0 0.0 1.1 1 0 0 1 1 1 0 RNA polymerase Rpb3/RpoA insert domain DUF5131 PF07505.11 EME67888.1 - 4.9e-58 196.5 0.2 5.6e-58 196.3 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF5131) PEP_mutase PF13714.6 EME67888.1 - 0.17 11.3 0.0 0.24 10.8 0.0 1.2 1 0 0 1 1 1 0 Phosphoenolpyruvate phosphomutase DUF3116 PF11313.8 EME67889.1 - 0.06 13.2 0.2 0.14 12.0 0.2 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3116) WYL PF13280.6 EME67890.1 - 1.7e-32 112.9 0.3 3.7e-32 111.7 0.3 1.5 1 0 0 1 1 1 1 WYL domain HD_2 PF12917.7 EME67893.1 - 1.2e-05 25.1 0.0 0.00018 21.3 0.0 2.2 1 1 0 1 1 1 1 HD containing hydrolase-like enzyme HD_3 PF13023.6 EME67893.1 - 0.0066 16.4 0.0 0.0086 16.0 0.0 1.2 1 0 0 1 1 1 1 HD domain DUF3572 PF12096.8 EME67894.1 - 2.7e-31 107.6 0.0 3.1e-31 107.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3572) RNase_T PF00929.24 EME67895.1 - 1.2e-08 35.6 0.0 2.4e-08 34.7 0.0 1.5 1 1 0 1 1 1 1 Exonuclease DUF3077 PF11275.8 EME67896.1 - 0.14 12.4 0.0 0.19 12.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3077) HTH_17 PF12728.7 EME67897.1 - 0.0027 17.8 0.2 0.0037 17.4 0.2 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain Phage_integrase PF00589.22 EME67899.1 - 2e-27 96.1 0.0 3e-27 95.5 0.0 1.3 1 0 0 1 1 1 1 Phage integrase family Arm-DNA-bind_3 PF13356.6 EME67899.1 - 2.4e-16 59.8 0.1 5.9e-16 58.6 0.1 1.7 1 0 0 1 1 1 1 Arm DNA-binding domain Phage_int_SAM_3 PF14659.6 EME67899.1 - 0.017 15.4 0.0 0.031 14.5 0.0 1.4 1 0 0 1 1 1 0 Phage integrase, N-terminal SAM-like domain AAA PF00004.29 EME67900.1 - 3.5e-30 105.1 0.0 7.3e-30 104.1 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Peptidase_M41 PF01434.18 EME67900.1 - 2.3e-19 70.0 0.5 8.3e-19 68.2 0.5 1.8 1 1 0 1 1 1 1 Peptidase family M41 RuvB_N PF05496.12 EME67900.1 - 4.7e-05 23.2 0.0 0.0001 22.1 0.0 1.6 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_18 PF13238.6 EME67900.1 - 0.00044 20.8 0.0 0.00086 19.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 EME67900.1 - 0.00092 19.6 1.1 0.051 14.0 0.1 2.8 1 1 1 2 2 2 1 AAA ATPase domain IstB_IS21 PF01695.17 EME67900.1 - 0.0017 18.1 0.0 0.0043 16.8 0.0 1.7 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_33 PF13671.6 EME67900.1 - 0.0019 18.4 0.0 0.0043 17.2 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 EME67900.1 - 0.0032 17.7 0.3 2.1 8.6 0.2 2.5 1 1 1 2 2 2 1 AAA domain AAA_5 PF07728.14 EME67900.1 - 0.0084 16.1 0.2 0.047 13.7 0.2 2.2 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) TsaE PF02367.17 EME67900.1 - 0.011 15.8 0.0 0.019 15.0 0.0 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_2 PF07724.14 EME67900.1 - 0.018 15.2 0.0 0.034 14.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) AAA_28 PF13521.6 EME67900.1 - 0.022 15.0 0.0 0.04 14.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 EME67900.1 - 0.043 13.7 0.0 0.091 12.7 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain Sigma54_activ_2 PF14532.6 EME67900.1 - 0.065 13.3 0.0 0.16 12.1 0.0 1.6 1 0 0 1 1 1 0 Sigma-54 interaction domain NACHT PF05729.12 EME67900.1 - 0.079 12.9 1.5 0.25 11.2 0.2 2.5 3 0 0 3 3 3 0 NACHT domain Viral_helicase1 PF01443.18 EME67900.1 - 0.089 12.5 0.0 0.13 12.0 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_17 PF13207.6 EME67900.1 - 0.089 13.2 0.0 0.24 11.8 0.0 1.7 2 0 0 2 2 1 0 AAA domain AAA_25 PF13481.6 EME67900.1 - 0.11 12.1 2.8 0.19 11.3 0.3 2.7 3 1 0 3 3 3 0 AAA domain DUF2530 PF10745.9 EME67900.1 - 0.14 12.4 1.3 0.47 10.7 1.3 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF2530) Zeta_toxin PF06414.12 EME67900.1 - 0.16 11.2 0.1 0.32 10.2 0.1 1.4 1 0 0 1 1 1 0 Zeta toxin dNK PF01712.19 EME67900.1 - 0.31 10.9 0.0 0.46 10.3 0.0 1.2 1 0 0 1 1 1 0 Deoxynucleoside kinase Peptidase_S24 PF00717.23 EME67902.1 - 1.2e-13 50.8 0.0 1.7e-13 50.3 0.0 1.3 1 0 0 1 1 1 1 Peptidase S24-like RNA_pol_A_bac PF01000.26 EME67902.1 - 0.075 13.4 0.0 0.099 13.0 0.0 1.2 1 0 0 1 1 1 0 RNA polymerase Rpb3/RpoA insert domain IMS PF00817.20 EME67903.1 - 8.1e-34 116.8 0.0 1.4e-33 116.1 0.0 1.4 1 0 0 1 1 1 1 impB/mucB/samB family DUF4113 PF13438.6 EME67903.1 - 1.4e-20 73.1 0.0 3.4e-20 71.8 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4113) IMS_C PF11799.8 EME67903.1 - 1.1e-08 35.8 0.0 3.7e-08 34.1 0.0 1.8 2 0 0 2 2 2 1 impB/mucB/samB family C-terminal domain IMS_HHH PF11798.8 EME67903.1 - 0.004 17.4 0.0 0.011 16.1 0.0 1.8 1 0 0 1 1 1 1 IMS family HHH motif DUF3320 PF11784.8 EME67904.1 - 0.00027 20.8 0.4 0.001 19.0 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF3320) DUF1974 PF09317.11 EME67904.1 - 0.02 14.5 0.0 0.031 13.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1974) DUF2554 PF10829.8 EME67904.1 - 0.095 13.1 0.2 2 8.9 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2554) HTH_17 PF12728.7 EME67905.1 - 0.0011 19.2 0.0 0.0016 18.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_7 PF02796.15 EME67905.1 - 0.029 14.5 0.0 0.045 13.8 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase MerR PF00376.23 EME67905.1 - 0.041 13.6 0.0 0.069 12.9 0.0 1.4 1 0 0 1 1 1 0 MerR family regulatory protein HTH_23 PF13384.6 EME67905.1 - 0.049 13.4 0.0 0.08 12.8 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain GP3_package PF16677.5 EME67905.1 - 0.065 13.4 0.0 0.085 13.0 0.0 1.1 1 0 0 1 1 1 0 DNA-packaging protein gp3 HTH_31 PF13560.6 EME67905.1 - 0.08 13.3 0.0 0.12 12.8 0.0 1.3 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 EME67905.1 - 0.12 11.8 0.0 0.18 11.2 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_Tnp_1 PF01527.20 EME67906.1 - 1e-18 67.4 0.1 1.3e-18 67.0 0.1 1.2 1 0 0 1 1 1 1 Transposase HTH_23 PF13384.6 EME67906.1 - 0.011 15.6 0.1 0.019 14.7 0.1 1.5 1 1 0 1 1 1 0 Homeodomain-like domain HTH_28 PF13518.6 EME67906.1 - 0.016 15.4 0.0 0.016 15.4 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 EME67906.1 - 0.017 14.5 0.6 0.034 13.6 0.6 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 SBP_bac_5 PF00496.22 EME67908.1 - 5.3e-66 223.1 0.0 7.7e-66 222.6 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle ACC_epsilon PF13822.6 EME67909.1 - 0.028 15.1 1.5 0.071 13.8 1.0 1.8 2 0 0 2 2 2 0 Acyl-CoA carboxylase epsilon subunit DUF4148 PF13663.6 EME67909.1 - 0.42 10.8 4.7 0.48 10.6 3.1 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4148) EF-hand_6 PF13405.6 EME67910.1 - 0.049 13.6 0.0 5.7 7.1 0.0 2.7 2 0 0 2 2 2 0 EF-hand domain EF-hand_1 PF00036.32 EME67910.1 - 0.089 12.4 0.1 6.9 6.5 0.0 2.6 2 0 0 2 2 2 0 EF hand CAP_N PF01213.19 EME67910.1 - 0.12 11.8 3.1 0.23 10.9 3.1 1.4 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal Sensor PF13796.6 EME67910.1 - 0.2 11.7 12.5 0.78 9.8 12.5 2.0 1 1 0 1 1 1 0 Putative sensor EF-hand_5 PF13202.6 EME67910.1 - 0.27 10.8 4.4 1 9.0 0.8 2.6 2 0 0 2 2 2 0 EF hand EPSP_synthase PF00275.20 EME67911.1 - 1.3e-97 327.1 5.7 1.7e-97 326.8 5.7 1.1 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) EpmC PF04315.12 EME67912.1 - 0.047 13.4 0.0 0.078 12.7 0.0 1.3 1 0 0 1 1 1 0 Elongation factor P hydroxylase Peptidase_M50 PF02163.22 EME67912.1 - 0.14 11.4 0.0 0.19 11.0 0.0 1.2 1 0 0 1 1 1 0 Peptidase family M50 ApbA PF02558.16 EME67913.1 - 3.1e-35 121.1 0.0 4.9e-35 120.4 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA ApbA_C PF08546.11 EME67913.1 - 1.9e-24 86.2 0.1 2.9e-24 85.7 0.1 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA C terminal F420_oxidored PF03807.17 EME67913.1 - 6e-06 26.7 0.1 4.2e-05 24.0 0.0 2.3 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent POR_N PF01855.19 EME67914.1 - 1.1e-78 264.1 0.6 1.8e-78 263.4 0.6 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.18 EME67914.1 - 7.5e-29 101.0 0.0 1.4e-28 100.1 0.0 1.4 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase EKR PF10371.9 EME67914.1 - 5.1e-22 77.4 0.0 1.1e-21 76.3 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function PFOR_II PF17147.4 EME67914.1 - 1.5e-12 47.7 0.1 4.5e-12 46.2 0.1 1.8 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Fer4_16 PF13484.6 EME67914.1 - 2e-09 38.3 7.6 4.6e-09 37.1 7.6 1.7 1 0 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 EME67914.1 - 4.1e-09 36.4 9.3 2.7e-08 33.8 9.3 2.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 EME67914.1 - 6.3e-09 36.3 8.2 1.9e-08 34.7 8.2 1.9 1 0 0 1 1 1 1 4Fe-4S dicluster domain TPP_enzyme_C PF02775.21 EME67914.1 - 7.8e-09 35.5 0.3 2.3e-08 34.0 0.3 1.8 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Fer4_6 PF12837.7 EME67914.1 - 9.2e-08 31.9 21.7 4.4e-06 26.5 4.0 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.6 EME67914.1 - 1.9e-07 31.1 7.1 1.9e-07 31.1 7.1 2.1 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 EME67914.1 - 3.3e-07 30.4 6.5 2.4e-06 27.6 6.4 2.5 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.27 EME67914.1 - 6.2e-07 29.0 24.1 4.2e-05 23.2 3.5 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_8 PF13183.6 EME67914.1 - 1.9e-05 25.0 5.0 5.6e-05 23.5 5.0 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 EME67914.1 - 4.7e-05 23.2 17.8 0.018 15.1 3.1 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_17 PF13534.6 EME67914.1 - 0.00037 21.0 7.5 0.0014 19.1 7.5 2.1 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.6 EME67914.1 - 0.00054 20.1 4.0 0.21 11.8 0.2 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Transketolase_C PF02780.20 EME67914.1 - 0.038 13.9 0.1 0.16 11.9 0.1 2.0 2 0 0 2 2 2 0 Transketolase, C-terminal domain Fer4_13 PF13370.6 EME67914.1 - 0.073 13.6 9.6 0.51 10.9 0.5 3.1 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_4 PF12800.7 EME67914.1 - 0.15 12.6 15.5 0.72 10.5 2.2 3.3 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_15 PF13459.6 EME67914.1 - 0.45 11.3 4.9 1 10.1 0.2 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_3 PF12798.7 EME67914.1 - 1.3 10.1 26.7 0.057 14.4 5.1 3.2 3 0 0 3 3 2 0 4Fe-4S binding domain PAS_4 PF08448.10 EME67915.1 - 2.7e-12 46.9 0.0 4e-12 46.3 0.0 1.2 1 0 0 1 1 1 1 PAS fold PAS PF00989.25 EME67915.1 - 3.3e-09 36.8 0.0 4.1e-09 36.4 0.0 1.2 1 1 0 1 1 1 1 PAS fold PAS_9 PF13426.7 EME67915.1 - 2.1e-07 31.1 0.0 2.5e-07 30.9 0.0 1.2 1 0 0 1 1 1 1 PAS domain PAS_8 PF13188.7 EME67915.1 - 9.7e-06 25.5 0.0 1.6e-05 24.8 0.0 1.3 1 0 0 1 1 1 1 PAS domain PAS_7 PF12860.7 EME67915.1 - 0.069 13.3 0.0 0.089 13.0 0.0 1.2 1 0 0 1 1 1 0 PAS fold Cadherin_5 PF17892.1 EME67917.1 - 1.5e-40 137.1 51.1 2.3e-31 107.7 4.0 6.6 6 1 0 6 6 6 5 Cadherin-like domain Big_9 PF17963.1 EME67917.1 - 1.6e-40 137.7 78.9 1.3e-16 61.1 9.3 6.1 6 1 0 6 6 6 4 Bacterial Ig domain Cadherin_4 PF17803.1 EME67917.1 - 1.4e-34 118.5 81.6 2.4e-13 50.5 7.4 7.3 7 0 0 7 7 7 5 Bacterial cadherin-like domain NPCBM_assoc PF10633.9 EME67917.1 - 0.012 15.8 2.3 0.6 10.4 0.1 3.6 3 0 0 3 3 3 0 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF11 PF01345.18 EME67917.1 - 0.027 14.8 13.3 8.1 6.8 3.7 4.8 2 2 1 3 3 3 0 Domain of unknown function DUF11 GldM_C PF12080.8 EME67917.1 - 0.039 14.2 0.4 0.3 11.3 0.0 2.7 2 0 0 2 2 2 0 GldM C-terminal domain HU-CCDC81_bac_2 PF18175.1 EME67917.1 - 0.055 13.3 1.1 6.5 6.7 0.1 3.8 4 0 0 4 4 4 0 CCDC81-like prokaryotic HU domain 2 DUF2231 PF09990.9 EME67922.1 - 0.037 14.5 0.2 0.041 14.3 0.2 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2231) Helicase_RecD PF05127.14 EME67923.1 - 0.02 14.7 0.0 0.042 13.7 0.0 1.5 1 0 0 1 1 1 0 Helicase DUF4381 PF14316.6 EME67924.1 - 0.093 13.0 0.1 0.11 12.8 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4381) YvrJ PF12841.7 EME67924.1 - 0.14 11.7 0.0 0.43 10.1 0.0 1.8 2 0 0 2 2 2 0 YvrJ protein family GTA_holin_3TM PF11351.8 EME67925.1 - 6.3e-25 88.1 2.2 8.3e-25 87.7 2.2 1.1 1 0 0 1 1 1 1 Holin of 3TMs, for gene-transfer release Rubrerythrin PF02915.17 EME67926.1 - 1.4e-11 44.9 1.0 5.1e-06 26.9 0.2 2.0 2 0 0 2 2 2 2 Rubrerythrin Ferritin_2 PF13668.6 EME67926.1 - 2.4e-07 31.0 0.2 0.00021 21.5 0.0 2.1 2 0 0 2 2 2 2 Ferritin-like domain Ferritin PF00210.24 EME67926.1 - 0.00018 21.4 3.0 0.00085 19.3 3.0 1.9 1 1 0 1 1 1 1 Ferritin-like domain Fe-ADH PF00465.19 EME67926.1 - 0.0087 14.9 0.2 0.41 9.4 0.1 2.0 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase Dodecin PF07311.12 EME67927.1 - 9.4e-31 105.9 0.6 1e-30 105.7 0.6 1.0 1 0 0 1 1 1 1 Dodecin NeA_P2 PF12312.8 EME67927.1 - 0.047 13.1 0.0 0.05 13.1 0.0 1.0 1 0 0 1 1 1 0 Nepovirus subgroup A polyprotein DUF3723 PF12520.8 EME67928.1 - 0.022 13.4 0.0 0.025 13.3 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3723) Thioredoxin PF00085.20 EME67929.1 - 2.2e-33 114.3 0.0 2.4e-33 114.2 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_8 PF13905.6 EME67929.1 - 2.3e-08 34.3 0.0 4.1e-06 27.0 0.0 2.1 1 1 1 2 2 2 1 Thioredoxin-like Thioredoxin_2 PF13098.6 EME67929.1 - 3.8e-08 33.8 0.0 4e-07 30.5 0.0 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_9 PF14595.6 EME67929.1 - 9.5e-06 25.4 0.0 1e-05 25.3 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Redoxin PF08534.10 EME67929.1 - 1.1e-05 25.1 0.0 0.00013 21.7 0.0 1.9 1 1 1 2 2 2 1 Redoxin AhpC-TSA PF00578.21 EME67929.1 - 0.0002 21.3 0.0 0.00023 21.1 0.0 1.3 1 0 0 1 1 1 1 AhpC/TSA family Thioredoxin_7 PF13899.6 EME67929.1 - 0.00032 20.8 0.0 0.00044 20.4 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like DUF836 PF05768.14 EME67929.1 - 0.0011 19.3 0.0 0.0014 19.0 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) TraF PF13728.6 EME67929.1 - 0.0013 18.6 0.0 0.0015 18.4 0.0 1.1 1 0 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin_3 PF13192.6 EME67929.1 - 0.0018 18.2 0.0 0.0023 18.0 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin domain OST3_OST6 PF04756.13 EME67929.1 - 0.0068 15.8 0.0 0.0082 15.5 0.0 1.1 1 0 0 1 1 1 1 OST3 / OST6 family, transporter family Glutaredoxin PF00462.24 EME67929.1 - 0.12 12.6 0.0 0.22 11.8 0.0 1.5 1 1 0 1 1 1 0 Glutaredoxin Hemerythrin PF01814.23 EME67930.1 - 2e-10 41.4 0.5 2.6e-10 41.0 0.5 1.1 1 0 0 1 1 1 1 Hemerythrin HHE cation binding domain Saccharop_dh_N PF04455.12 EME67931.1 - 0.019 15.3 0.0 0.022 15.2 0.0 1.1 1 0 0 1 1 1 0 LOR/SDH bifunctional enzyme conserved region ALG3 PF05208.13 EME67931.1 - 0.035 13.5 0.1 0.039 13.4 0.1 1.1 1 0 0 1 1 1 0 ALG3 protein Kazal_2 PF07648.15 EME67933.1 - 0.028 14.6 0.1 0.072 13.2 0.0 1.7 1 1 1 2 2 2 0 Kazal-type serine protease inhibitor domain Uso1_p115_C PF04871.13 EME67933.1 - 0.11 12.9 6.9 0.13 12.7 6.9 1.0 1 0 0 1 1 1 0 Uso1 / p115 like vesicle tethering protein, C terminal region TMPIT PF07851.13 EME67933.1 - 0.11 11.7 1.6 0.13 11.5 1.6 1.0 1 0 0 1 1 1 0 TMPIT-like protein Phage_integrase PF00589.22 EME67934.1 - 1.6e-24 86.7 0.1 1.8e-24 86.5 0.1 1.0 1 0 0 1 1 1 1 Phage integrase family Phage_integr_3 PF16795.5 EME67934.1 - 0.025 14.5 0.2 0.075 12.9 0.2 2.0 1 1 0 1 1 1 0 Archaeal phage integrase LRR_4 PF12799.7 EME67935.1 - 0.017 15.5 1.1 8.4 7.0 0.0 3.8 4 0 0 4 4 4 0 Leucine Rich repeats (2 copies) Phage_integrase PF00589.22 EME67938.1 - 5.4e-10 39.3 0.0 8e-10 38.8 0.0 1.3 1 0 0 1 1 1 1 Phage integrase family WYL PF13280.6 EME67939.1 - 8.5e-08 32.4 0.0 9.1e-08 32.3 0.0 1.0 1 0 0 1 1 1 1 WYL domain RelE PF06296.12 EME67941.1 - 6.9e-09 35.9 0.1 7.9e-09 35.7 0.1 1.1 1 0 0 1 1 1 1 RelE toxin of RelE / RelB toxin-antitoxin system MqsA_antitoxin PF15731.5 EME67942.1 - 8.5e-05 22.7 0.1 8.9e-05 22.6 0.1 1.1 1 0 0 1 1 1 1 Antitoxin component of bacterial toxin-antitoxin system, MqsA HTH_3 PF01381.22 EME67942.1 - 0.0016 18.4 0.0 0.0025 17.9 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix Viral_Rep PF02407.16 EME67942.1 - 0.0087 16.3 0.3 0.012 15.8 0.3 1.3 1 1 0 1 1 1 1 Putative viral replication protein HTH_31 PF13560.6 EME67942.1 - 0.01 16.1 0.4 0.014 15.7 0.4 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Thioesterase PF00975.20 EME67942.1 - 0.012 15.8 0.2 0.012 15.7 0.2 1.2 1 0 0 1 1 1 0 Thioesterase domain HTH_19 PF12844.7 EME67942.1 - 0.029 14.4 0.1 0.045 13.8 0.1 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain DUF1186 PF06685.11 EME67943.1 - 2.4e-27 95.9 0.0 2.9e-27 95.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1186) SEC-C PF02810.15 EME67943.1 - 2.4e-10 40.1 10.2 3.8e-10 39.5 10.2 1.3 1 0 0 1 1 1 1 SEC-C motif FAD-SLDH PF12318.8 EME67943.1 - 0.13 12.3 0.0 0.22 11.6 0.0 1.3 1 0 0 1 1 1 0 Membrane bound FAD containing D-sorbitol dehydrogenase DDE_Tnp_IS66 PF03050.14 EME67944.1 - 2.5e-76 256.8 0.1 3.6e-76 256.3 0.1 1.1 1 0 0 1 1 1 1 Transposase IS66 family DDE_Tnp_IS66_C PF13817.6 EME67944.1 - 7.4e-17 61.3 0.1 1.4e-16 60.4 0.1 1.5 1 0 0 1 1 1 1 IS66 C-terminal element NTase_sub_bind PF08780.11 EME67944.1 - 0.14 12.1 0.4 0.25 11.3 0.4 1.3 1 0 0 1 1 1 0 Nucleotidyltransferase substrate binding protein like Transposase_mut PF00872.18 EME67945.1 - 1.8e-42 145.6 0.2 2.1e-42 145.3 0.2 1.0 1 0 0 1 1 1 1 Transposase, Mutator family MULE PF10551.9 EME67945.1 - 5.2e-08 33.2 0.0 6.7e-08 32.9 0.0 1.1 1 0 0 1 1 1 1 MULE transposase domain Transposase_mut PF00872.18 EME67946.1 - 9.7e-17 60.9 0.0 1.1e-16 60.7 0.0 1.0 1 0 0 1 1 1 1 Transposase, Mutator family YfhO PF09586.10 EME67947.1 - 1.3 7.2 0.0 1.3 7.2 0.0 3.0 3 1 0 3 3 3 0 Bacterial membrane protein YfhO Glycos_transf_2 PF00535.26 EME67948.1 - 5e-09 36.2 0.0 7.3e-09 35.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Orbi_NS3 PF01616.16 EME67948.1 - 0.68 9.6 3.9 0.3 10.8 0.5 2.0 3 0 0 3 3 3 0 Orbivirus NS3 Methyltransf_11 PF08241.12 EME67949.1 - 9.1e-11 42.3 0.0 1.6e-10 41.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 EME67949.1 - 1.8e-10 41.4 0.0 3e-10 40.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 EME67949.1 - 2.3e-10 40.6 0.0 2.8e-10 40.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 EME67949.1 - 4.4e-09 37.0 0.0 8.8e-09 36.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 EME67949.1 - 2.7e-06 27.2 0.0 2e-05 24.4 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_9 PF08003.11 EME67949.1 - 1.2e-05 24.4 0.0 1.7e-05 23.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Ubie_methyltran PF01209.18 EME67949.1 - 0.00099 18.5 0.0 0.0014 18.0 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family RrnaAD PF00398.20 EME67949.1 - 0.016 14.3 0.0 0.022 13.8 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_24 PF13578.6 EME67949.1 - 0.027 15.5 0.0 0.056 14.5 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain MTS PF05175.14 EME67949.1 - 0.059 12.9 0.0 0.26 10.8 0.0 1.9 1 1 0 1 1 1 0 Methyltransferase small domain Radical_SAM PF04055.21 EME67950.1 - 2.1e-19 70.5 0.7 2.7e-17 63.7 0.4 2.4 2 0 0 2 2 2 2 Radical SAM superfamily B12-binding PF02310.19 EME67950.1 - 2.4e-19 69.6 0.0 6.1e-19 68.2 0.0 1.7 1 0 0 1 1 1 1 B12 binding domain Baculo_LEF-11 PF06385.12 EME67950.1 - 0.068 13.7 0.0 6.2 7.4 0.0 2.8 2 0 0 2 2 2 0 Baculovirus LEF-11 protein FAD_binding_4 PF01565.23 EME67951.1 - 1e-20 73.9 0.1 2.5e-20 72.7 0.0 1.6 2 0 0 2 2 2 1 FAD binding domain adh_short PF00106.25 EME67952.1 - 2.8e-27 95.4 0.0 3.7e-27 95.1 0.0 1.0 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 EME67952.1 - 6.3e-16 58.6 0.0 7.8e-16 58.3 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 EME67952.1 - 4.9e-09 36.4 0.1 6.2e-09 36.0 0.1 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 EME67952.1 - 0.00061 19.3 0.0 0.00089 18.8 0.0 1.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NYN PF01936.18 EME67952.1 - 0.04 14.4 0.0 0.071 13.6 0.0 1.3 1 0 0 1 1 1 0 NYN domain Methyltransf_11 PF08241.12 EME67953.1 - 1.3e-16 61.0 0.0 2.2e-16 60.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 EME67953.1 - 4.2e-16 59.2 0.0 5.8e-16 58.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 EME67953.1 - 2.2e-14 53.9 0.0 5e-14 52.8 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 EME67953.1 - 4e-14 52.7 0.0 6.2e-14 52.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 EME67953.1 - 1.7e-13 51.2 0.0 3.1e-13 50.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 EME67953.1 - 3.1e-08 33.2 0.0 4.8e-08 32.6 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family NodS PF05401.11 EME67953.1 - 0.00035 20.2 0.0 0.00048 19.8 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) Prok-RING_1 PF14446.6 EME67953.1 - 0.0012 18.7 1.1 0.0028 17.5 1.1 1.6 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 CMAS PF02353.20 EME67953.1 - 0.0042 16.4 0.0 0.0055 16.0 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_2 PF00891.18 EME67953.1 - 0.0087 15.4 0.0 0.012 15.0 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase domain MTS PF05175.14 EME67953.1 - 0.012 15.2 0.0 0.021 14.4 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase small domain UPF0547 PF10571.9 EME67953.1 - 0.026 14.6 0.7 0.065 13.3 0.7 1.7 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 TehB PF03848.14 EME67953.1 - 0.048 13.1 0.2 0.14 11.5 0.0 1.7 2 0 0 2 2 2 0 Tellurite resistance protein TehB DZR PF12773.7 EME67953.1 - 0.054 13.5 0.2 0.13 12.3 0.2 1.6 1 0 0 1 1 1 0 Double zinc ribbon CheR PF01739.18 EME67953.1 - 0.098 12.1 0.0 0.23 10.9 0.0 1.6 1 0 0 1 1 1 0 CheR methyltransferase, SAM binding domain HypA PF01155.19 EME67953.1 - 0.11 12.5 0.1 0.75 9.8 0.0 2.0 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Ribosomal_S27e PF01667.17 EME67953.1 - 0.26 11.0 1.6 0.48 10.2 0.2 2.1 2 0 0 2 2 2 0 Ribosomal protein S27 zf-ribbon_3 PF13248.6 EME67953.1 - 1.1 8.7 3.2 2.9 7.4 1.7 2.4 2 1 0 2 2 2 0 zinc-ribbon domain zf-TFIIB PF13453.6 EME67953.1 - 1.2 8.6 3.4 27 4.2 0.1 3.1 3 0 0 3 3 3 0 Transcription factor zinc-finger Metalloenzyme PF01676.18 EME67954.1 - 8.6e-20 71.1 0.0 9.9e-20 71.0 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Ntox14 PF15522.6 EME67954.1 - 0.037 13.4 0.0 0.038 13.4 0.0 1.0 1 0 0 1 1 1 0 Novel toxin 14 TauE PF01925.19 EME67955.1 - 0.039 13.6 44.4 0.05 13.2 31.5 2.1 2 0 0 2 2 2 0 Sulfite exporter TauE/SafE DUF1129 PF06570.11 EME67955.1 - 0.085 12.3 1.9 3.1 7.2 0.7 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1129) Pam17 PF08566.10 EME67955.1 - 0.21 11.4 0.0 0.44 10.4 0.0 1.6 1 0 0 1 1 1 0 Mitochondrial import protein Pam17 DUF4491 PF14898.6 EME67955.1 - 3.1 8.3 5.9 17 5.9 0.0 3.3 3 0 0 3 3 3 0 Domain of unknown function (DUF4491) Acyl-CoA_dh_1 PF00441.24 EME67957.1 - 1.4e-41 142.2 8.0 2.8e-41 141.2 3.5 2.5 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 EME67957.1 - 4.5e-32 111.1 1.9 2e-31 109.0 0.1 2.3 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 EME67957.1 - 2.5e-16 59.7 0.1 5.2e-16 58.6 0.1 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 EME67957.1 - 6e-14 52.5 0.8 6e-14 52.5 0.8 1.9 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain ADH_zinc_N PF00107.26 EME67958.1 - 5e-33 113.9 0.1 8.1e-33 113.2 0.1 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 EME67958.1 - 2.4e-15 56.4 0.9 6.5e-15 55.0 0.2 1.9 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.6 EME67958.1 - 2.9e-06 28.4 0.0 5.7e-06 27.4 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase MM_CoA_mutase PF01642.22 EME67959.1 - 1.5e-130 436.2 0.1 1.9e-130 435.9 0.1 1.1 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase B12-binding PF02310.19 EME67959.1 - 3.2e-17 62.7 0.4 7.6e-17 61.5 0.4 1.6 1 0 0 1 1 1 1 B12 binding domain DUF2236 PF09995.9 EME67959.1 - 0.032 14.5 0.3 0.084 13.1 0.3 1.7 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2236) ArsC PF03960.15 EME67960.1 - 7.8e-13 48.2 0.0 1e-12 47.9 0.0 1.3 1 1 0 1 1 1 1 ArsC family Glutaredoxin PF00462.24 EME67960.1 - 0.00096 19.3 0.0 0.0015 18.7 0.0 1.3 1 0 0 1 1 1 1 Glutaredoxin AbiEi_4 PF13338.6 EME67960.1 - 0.035 14.2 1.4 0.13 12.4 0.2 2.4 3 1 0 3 3 3 0 Transcriptional regulator, AbiEi antitoxin MS_channel PF00924.18 EME67961.1 - 6.2e-41 140.2 0.4 6.2e-41 140.2 0.4 1.8 2 0 0 2 2 2 1 Mechanosensitive ion channel MscS_TM PF12794.7 EME67961.1 - 0.025 13.4 9.4 0.02 13.8 6.1 2.1 1 1 1 2 2 2 0 Mechanosensitive ion channel inner membrane domain 1 DUF4235 PF14019.6 EME67961.1 - 0.058 13.5 0.2 0.058 13.5 0.2 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF4235) DUF2721 PF11026.8 EME67961.1 - 0.62 10.0 8.5 0.63 9.9 3.6 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2721) RecX PF02631.16 EME67962.1 - 4.9e-19 69.0 0.3 9.5e-19 68.1 0.1 1.5 1 1 0 1 1 1 1 RecX family Acetyltransf_11 PF13720.6 EME67962.1 - 0.035 14.6 0.2 3 8.4 0.1 2.7 1 1 1 2 2 2 0 Udp N-acetylglucosamine O-acyltransferase; Domain 2 ABC2_membrane PF01061.24 EME67963.1 - 2.3e-28 99.1 18.3 3.4e-28 98.5 18.3 1.2 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 EME67963.1 - 8.7e-07 28.4 16.5 8.7e-07 28.4 16.5 1.5 1 1 1 2 2 2 1 ABC-2 family transporter protein Aminotran_3 PF00202.21 EME67964.1 - 5.5e-113 377.7 0.0 6.7e-113 377.4 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 EME67964.1 - 0.069 12.3 0.0 0.1 11.8 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class I and II OTCace_N PF02729.21 EME67965.1 - 8.5e-48 162.1 0.0 1.1e-47 161.7 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 EME67965.1 - 2.2e-46 157.8 0.0 3.6e-46 157.1 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HSP33 PF01430.19 EME67966.1 - 1.2e-72 244.6 0.0 1.3e-72 244.4 0.0 1.0 1 0 0 1 1 1 1 Hsp33 protein NapD PF03927.13 EME67966.1 - 0.018 15.1 0.1 0.095 12.8 0.0 2.1 2 0 0 2 2 2 0 NapD protein Ribosomal_L28 PF00830.19 EME67968.1 - 6.9e-25 87.0 0.2 1e-24 86.5 0.2 1.3 1 0 0 1 1 1 1 Ribosomal L28 family HTH_26 PF13443.6 EME67969.1 - 0.042 14.3 89.8 5.8 7.4 0.3 22.7 10 9 12 24 24 24 0 Cro/C1-type HTH DNA-binding domain LRR_8 PF13855.6 EME67969.1 - 0.06 13.1 0.1 5 7.0 0.0 4.6 4 0 0 4 4 4 0 Leucine rich repeat DUF4351 PF14261.6 EME67969.1 - 0.061 13.4 78.3 9 6.4 0.1 25.8 12 10 14 26 26 26 0 Domain of unknown function (DUF4351) Phage_integrase PF00589.22 EME67971.1 - 8.6e-07 28.9 0.1 3.1e-06 27.1 0.1 1.7 1 1 0 1 1 1 1 Phage integrase family Resolvase PF00239.21 EME67972.1 - 4.1e-34 117.8 0.3 7.7e-34 116.9 0.1 1.5 2 0 0 2 2 2 1 Resolvase, N terminal domain Macro PF01661.21 EME67973.1 - 9.5e-21 74.0 0.0 1.7e-20 73.3 0.0 1.4 1 0 0 1 1 1 1 Macro domain DarT PF14487.6 EME67974.1 - 2.3e-64 217.0 0.0 2.5e-64 216.8 0.0 1.0 1 0 0 1 1 1 1 ssDNA thymidine ADP-ribosyltransferase, DarT Eco57I PF07669.11 EME67975.1 - 2.3e-16 60.2 0.0 6.8e-16 58.7 0.0 1.8 1 0 0 1 1 1 1 Eco57I restriction-modification methylase N6_Mtase PF02384.16 EME67975.1 - 4.6e-12 45.8 0.0 4.7e-06 26.1 0.0 3.8 2 1 0 2 2 2 2 N-6 DNA Methylase TaqI_C PF12950.7 EME67975.1 - 1.2e-09 38.2 0.0 2.1e-09 37.5 0.0 1.4 1 0 0 1 1 1 1 TaqI-like C-terminal specificity domain MTS PF05175.14 EME67975.1 - 0.051 13.1 0.0 1.7 8.1 0.0 2.7 2 1 0 2 2 2 0 Methyltransferase small domain HSDR_N PF04313.14 EME67975.1 - 0.15 12.0 0.0 0.31 11.0 0.0 1.5 1 0 0 1 1 1 0 Type I restriction enzyme R protein N terminus (HSDR_N) Amnionless PF14828.6 EME67976.1 - 0.18 10.6 0.0 0.24 10.2 0.0 1.1 1 0 0 1 1 1 0 Amnionless SpoVG PF04026.12 EME67979.1 - 6.9e-05 23.0 0.0 7.8e-05 22.8 0.0 1.1 1 0 0 1 1 1 1 SpoVG UvrD_C PF13361.6 EME67980.1 - 5.9e-19 68.6 0.0 6.4e-14 52.1 0.0 2.2 1 1 1 2 2 2 2 UvrD-like helicase C-terminal domain UvrD-helicase PF00580.21 EME67980.1 - 3.3e-11 43.3 0.0 8.6e-06 25.5 0.0 2.4 2 0 0 2 2 2 2 UvrD/REP helicase N-terminal domain AAA_19 PF13245.6 EME67980.1 - 1.1e-09 38.8 0.0 7.3e-09 36.1 0.0 2.3 2 1 0 2 2 2 1 AAA domain UvrD_C_2 PF13538.6 EME67980.1 - 5.2e-07 29.4 3.4 2.7e-06 27.1 0.6 2.8 2 1 0 2 2 2 1 UvrD-like helicase C-terminal domain AAA_30 PF13604.6 EME67980.1 - 4.4e-06 26.5 0.3 0.021 14.6 0.1 2.6 2 0 0 2 2 2 2 AAA domain PhoH PF02562.16 EME67980.1 - 2.4e-05 23.9 0.0 0.032 13.7 0.0 2.4 2 0 0 2 2 2 2 PhoH-like protein AAA_12 PF13087.6 EME67980.1 - 0.002 17.7 0.0 0.0079 15.8 0.0 1.7 1 1 1 2 2 2 1 AAA domain DUF2075 PF09848.9 EME67980.1 - 0.0042 16.4 0.1 0.28 10.4 0.0 2.4 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) Viral_helicase1 PF01443.18 EME67980.1 - 0.0054 16.5 0.7 0.36 10.5 0.2 3.3 3 1 0 3 3 3 1 Viral (Superfamily 1) RNA helicase HigB-like_toxin PF05015.13 EME67980.1 - 0.02 15.3 0.0 0.044 14.2 0.0 1.6 1 0 0 1 1 1 0 RelE-like toxin of type II toxin-antitoxin system HigB AAA_22 PF13401.6 EME67980.1 - 0.026 14.8 0.0 3.7 7.8 0.0 3.2 3 0 0 3 3 3 0 AAA domain AAA_25 PF13481.6 EME67980.1 - 0.029 14.0 0.9 0.081 12.5 0.0 2.3 3 0 0 3 3 3 0 AAA domain AAA_16 PF13191.6 EME67980.1 - 0.036 14.4 0.2 0.16 12.4 0.2 2.1 1 1 0 1 1 1 0 AAA ATPase domain ATPase PF06745.13 EME67980.1 - 0.079 12.3 0.1 0.54 9.6 0.0 2.0 2 0 0 2 2 2 0 KaiC AlbA_2 PF04326.14 EME67981.1 - 2.4e-16 60.1 0.0 4.6e-16 59.3 0.0 1.5 1 0 0 1 1 1 1 Putative DNA-binding domain DUF2971 PF11185.8 EME67982.1 - 3.1e-05 25.1 0.3 0.00067 20.8 0.3 2.3 1 1 0 1 1 1 1 Protein of unknown function (DUF2971) Linocin_M18 PF04454.12 EME67984.1 - 0.055 12.7 0.0 1.4 8.2 0.0 2.2 2 0 0 2 2 2 0 Encapsulating protein for peroxidase TrbL PF04610.14 EME67985.1 - 0.17 11.6 0.0 0.2 11.4 0.0 1.1 1 0 0 1 1 1 0 TrbL/VirB6 plasmid conjugal transfer protein ResIII PF04851.15 EME67987.1 - 2.5e-13 50.4 0.0 4.4e-13 49.6 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_22 PF13401.6 EME67987.1 - 0.035 14.4 0.0 4 7.7 0.0 3.4 2 2 1 3 3 3 0 AAA domain Helicase_C PF00271.31 EME67987.1 - 0.19 12.1 0.1 0.53 10.6 0.1 1.8 1 0 0 1 1 1 0 Helicase conserved C-terminal domain DUF5131 PF07505.11 EME67990.1 - 2.4e-60 204.1 0.0 2.8e-60 203.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF5131) AMP-binding_C_2 PF14535.6 EME67991.1 - 1.5e-27 95.7 0.1 3.8e-27 94.4 0.1 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 EME67991.1 - 8.9e-15 54.2 0.1 8.9e-15 54.2 0.1 1.6 2 0 0 2 2 2 1 AMP-binding enzyme LuxE PF04443.12 EME67991.1 - 7.6e-07 28.5 0.0 0.00031 19.9 0.0 2.1 2 0 0 2 2 2 2 Acyl-protein synthetase, LuxE Thiolase_N PF00108.23 EME67992.1 - 2.2e-71 240.3 0.3 2.9e-71 239.9 0.3 1.1 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 EME67992.1 - 1.6e-46 156.9 1.7 3.8e-46 155.7 1.7 1.7 1 0 0 1 1 1 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 EME67992.1 - 2.9e-05 23.8 0.3 6.7e-05 22.6 0.3 1.6 1 0 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain 4HBT PF03061.22 EME67993.1 - 1.2e-13 51.2 1.7 1.3e-13 51.1 0.7 1.6 2 0 0 2 2 2 1 Thioesterase superfamily DUF4442 PF14539.6 EME67993.1 - 0.0059 16.7 0.0 0.0078 16.4 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) PS-DH PF14765.6 EME67993.1 - 0.08 12.2 0.0 0.1 11.8 0.0 1.1 1 0 0 1 1 1 0 Polyketide synthase dehydratase GGDEF PF00990.21 EME67994.1 - 2.1e-38 131.6 0.0 3.1e-38 131.0 0.0 1.3 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain ATP-synt_8 PF00895.20 EME67994.1 - 0.29 11.6 1.2 1.9 9.0 0.0 2.5 2 0 0 2 2 2 0 ATP synthase protein 8 YjgF_endoribonc PF14588.6 EME67995.1 - 5.1e-44 150.0 0.2 5.6e-44 149.9 0.2 1.0 1 0 0 1 1 1 1 YjgF/chorismate_mutase-like, putative endoribonuclease Ribonuc_L-PSP PF01042.21 EME67995.1 - 2.5e-22 79.2 0.0 3.2e-22 78.8 0.0 1.1 1 0 0 1 1 1 1 Endoribonuclease L-PSP DUF1127 PF06568.11 EME67996.1 - 0.0019 17.9 0.1 0.0029 17.3 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1127) AhpC-TSA PF00578.21 EME67997.1 - 0.00031 20.7 0.0 0.0004 20.3 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family T4_deiodinase PF00837.17 EME67997.1 - 0.00073 18.9 0.0 0.0011 18.4 0.0 1.2 1 0 0 1 1 1 1 Iodothyronine deiodinase Redoxin PF08534.10 EME67997.1 - 0.0014 18.3 0.0 0.0017 18.0 0.0 1.3 1 1 0 1 1 1 1 Redoxin Thioredoxin PF00085.20 EME67997.1 - 0.0049 16.8 0.0 0.028 14.4 0.0 1.9 2 0 0 2 2 2 1 Thioredoxin Thioredoxin_8 PF13905.6 EME67997.1 - 0.11 12.8 0.0 0.16 12.3 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin-like SBP_bac_3 PF00497.20 EME67998.1 - 9.1e-09 35.1 0.0 1.4e-08 34.4 0.0 1.3 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 SBP_bac_11 PF13531.6 EME67998.1 - 0.014 15.1 0.0 0.16 11.7 0.0 2.0 2 0 0 2 2 2 0 Bacterial extracellular solute-binding protein Ribonuc_red_lgC PF02867.15 EME68000.1 - 6.4e-126 420.9 0.0 5e-107 358.6 0.0 2.2 2 0 0 2 2 2 2 Ribonucleotide reductase, barrel domain Ribonuc_red_2_N PF08471.10 EME68000.1 - 5e-42 142.1 0.0 1.4e-41 140.7 0.0 1.8 1 0 0 1 1 1 1 Class II vitamin B12-dependent ribonucleotide reductase Transcrip_reg PF01709.20 EME68000.1 - 0.0028 17.1 0.0 0.0058 16.1 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator AAA_lid_3 PF17862.1 EME68000.1 - 0.029 14.2 0.0 0.085 12.7 0.0 1.8 1 0 0 1 1 1 0 AAA+ lid domain RNA_POL_M_15KD PF02150.16 EME68000.1 - 2.3 8.2 5.0 6.7 6.7 5.0 1.8 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit NDUFA12 PF05071.16 EME68001.1 - 2.2e-25 89.3 2.6 2.5e-25 89.1 2.6 1.1 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase subunit NDUFA12 MlaD PF02470.20 EME68002.1 - 1.1e-16 60.8 0.1 1.8e-16 60.2 0.1 1.3 1 0 0 1 1 1 1 MlaD protein MlaD PF02470.20 EME68003.1 - 1.7e-20 73.0 0.2 2.3e-20 72.7 0.2 1.2 1 0 0 1 1 1 1 MlaD protein DUF2155 PF09923.9 EME68004.1 - 3.4e-34 116.9 0.0 4.3e-34 116.6 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2155) Peptidase_A6 PF01829.16 EME68004.1 - 0.046 13.0 0.0 0.054 12.8 0.0 1.1 1 0 0 1 1 1 0 Peptidase A6 family Leu_Phe_trans PF03588.14 EME68005.1 - 6e-68 227.6 0.0 7e-68 227.4 0.0 1.0 1 0 0 1 1 1 1 Leucyl/phenylalanyl-tRNA protein transferase Acetyltransf_6 PF13480.7 EME68005.1 - 0.00037 20.7 2.6 0.00065 19.9 2.1 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain PTPS_related PF10131.9 EME68006.1 - 2.5e-06 26.1 9.3 3.8e-06 25.5 9.3 1.4 1 0 0 1 1 1 1 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein PMT_2 PF13231.6 EME68006.1 - 4.1e-05 23.8 7.6 4.1e-05 23.8 7.6 2.8 3 1 1 4 4 4 1 Dolichyl-phosphate-mannose-protein mannosyltransferase GT87 PF09594.10 EME68006.1 - 0.00048 19.9 34.3 0.00048 19.9 34.3 2.7 2 1 0 2 2 2 1 Glycosyltransferase family 87 Phage_integrase PF00589.22 EME68008.1 - 1.5e-28 99.8 0.0 2.4e-28 99.1 0.0 1.3 1 0 0 1 1 1 1 Phage integrase family DUF2188 PF09954.9 EME68008.1 - 0.11 12.7 0.9 0.3 11.2 0.9 1.8 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2188) SO_alpha_A3 PF17806.1 EME68008.1 - 0.12 12.8 0.1 0.65 10.4 0.0 2.3 3 0 0 3 3 3 0 Sarcosine oxidase A3 domain Arm-DNA-bind_4 PF14657.6 EME68008.1 - 0.15 11.8 0.2 0.29 10.9 0.2 1.4 1 0 0 1 1 1 0 Arm DNA-binding domain OmdA PF13376.6 EME68009.1 - 0.14 12.1 0.5 0.25 11.4 0.5 1.4 1 0 0 1 1 1 0 Bacteriocin-protection, YdeI or OmpD-Associated Pentapeptide PF00805.22 EME68010.1 - 3.7e-29 99.9 15.3 3.2e-10 39.4 0.2 8.4 7 2 1 9 9 9 5 Pentapeptide repeats (8 copies) Pentapeptide_3 PF13576.6 EME68010.1 - 3.2e-21 75.2 14.3 3.1e-05 24.0 0.0 7.7 5 2 2 8 8 8 5 Pentapeptide repeats (9 copies) Pentapeptide_4 PF13599.6 EME68010.1 - 3.2e-14 52.8 0.0 4e-07 30.1 0.0 4.1 2 1 0 3 3 3 3 Pentapeptide repeats (9 copies) UCR_Fe-S_N PF10399.9 EME68010.1 - 0.03 13.7 0.3 0.067 12.6 0.3 1.6 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal HEPN PF05168.14 EME68012.1 - 4.3e-22 78.4 0.0 5.6e-22 78.1 0.0 1.1 1 0 0 1 1 1 1 HEPN domain PaREP1 PF05942.11 EME68012.1 - 0.076 12.9 0.0 0.096 12.6 0.0 1.2 1 0 0 1 1 1 0 Archaeal PaREP1/PaREP8 family CHAD PF05235.14 EME68012.1 - 0.1 12.6 2.8 0.11 12.5 2.8 1.2 1 1 0 1 1 1 0 CHAD domain NTP_transf_2 PF01909.23 EME68013.1 - 2.8e-10 40.4 0.0 3.6e-10 40.0 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 EME68013.1 - 5.1e-10 39.3 0.0 7.1e-10 38.8 0.0 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase RlaP PF10127.9 EME68013.1 - 0.15 11.6 0.0 0.22 11.1 0.0 1.2 1 0 0 1 1 1 0 RNA repair pathway DNA polymerase beta family DNA_methylase PF00145.17 EME68014.1 - 2.2e-37 129.2 0.0 1.2e-22 80.7 0.0 3.2 3 0 0 3 3 3 3 C-5 cytosine-specific DNA methylase HATPase_c_3 PF13589.6 EME68015.1 - 1.8e-27 95.9 0.0 2.6e-27 95.3 0.0 1.2 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.26 EME68015.1 - 0.00011 22.7 0.0 0.00024 21.6 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Peptidase_C97 PF05903.14 EME68016.1 - 0.041 13.7 0.0 0.046 13.5 0.0 1.2 1 0 0 1 1 1 0 PPPDE putative peptidase domain Neisseria_TspB PF05616.13 EME68016.1 - 0.082 11.4 0.0 0.11 11.0 0.0 1.1 1 0 0 1 1 1 0 Neisseria meningitidis TspB protein Resolvase PF00239.21 EME68017.1 - 3.4e-30 105.1 2.8 4.7e-29 101.4 2.0 2.1 2 0 0 2 2 2 1 Resolvase, N terminal domain Recombinase PF07508.13 EME68017.1 - 2.6e-06 27.8 0.0 3.8e-06 27.2 0.0 1.2 1 0 0 1 1 1 1 Recombinase UPF0253 PF06786.12 EME68017.1 - 0.85 9.9 3.2 0.49 10.7 0.7 1.8 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0253) SpoIIE PF07228.12 EME68018.1 - 0.019 14.9 0.0 0.022 14.7 0.0 1.0 1 0 0 1 1 1 0 Stage II sporulation protein E (SpoIIE) Taxilin PF09728.9 EME68019.1 - 0.035 13.3 1.4 0.047 12.9 1.4 1.0 1 0 0 1 1 1 0 Myosin-like coiled-coil protein DUF4653 PF15546.6 EME68019.1 - 0.13 11.9 0.1 0.17 11.5 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4653) Oxysterol_BP PF01237.18 EME68019.1 - 0.17 10.7 0.0 0.2 10.4 0.0 1.1 1 0 0 1 1 1 0 Oxysterol-binding protein HTH_31 PF13560.6 EME68022.1 - 1.7e-14 53.9 0.5 2e-14 53.6 0.5 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 EME68022.1 - 2.5e-13 49.9 0.2 3.6e-13 49.3 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 EME68022.1 - 2.4e-12 46.7 0.0 2.8e-12 46.5 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 EME68022.1 - 1.2e-06 28.8 0.0 1.6e-06 28.4 0.0 1.1 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_37 PF13744.6 EME68022.1 - 0.00019 21.3 0.0 0.0003 20.7 0.0 1.4 1 1 0 1 1 1 1 Helix-turn-helix domain MqsA_antitoxin PF15731.5 EME68022.1 - 0.00061 19.9 0.0 0.00067 19.8 0.0 1.1 1 0 0 1 1 1 1 Antitoxin component of bacterial toxin-antitoxin system, MqsA HTH_25 PF13413.6 EME68022.1 - 0.0022 17.8 0.2 0.0047 16.8 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 EME68022.1 - 0.056 13.4 0.2 0.21 11.6 0.2 1.9 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_3 PF01381.22 EME68024.1 - 3.5e-07 30.2 0.0 1.1e-06 28.6 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.6 EME68024.1 - 0.00068 19.9 0.2 0.0029 17.9 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_26 PF13443.6 EME68024.1 - 0.057 13.9 0.0 0.094 13.2 0.0 1.3 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain ROS_MUCR PF05443.11 EME68025.1 - 4.9e-37 126.8 0.0 5.5e-37 126.6 0.0 1.0 1 0 0 1 1 1 1 ROS/MUCR transcriptional regulator protein Acyl-CoA_dh_1 PF00441.24 EME68026.1 - 7.6e-50 169.0 1.1 1.2e-49 168.3 1.1 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 EME68026.1 - 5.8e-35 120.4 0.3 1.3e-34 119.3 0.3 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.11 EME68026.1 - 7.1e-29 100.8 0.2 1.4e-28 99.8 0.2 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 EME68026.1 - 1.2e-22 80.0 0.1 2.1e-22 79.1 0.1 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain HpaB_N PF11794.8 EME68026.1 - 0.003 17.3 0.0 0.0042 16.8 0.0 1.2 1 0 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase N terminal Thiolase_N PF00108.23 EME68027.1 - 2.1e-83 279.7 1.0 2.8e-83 279.3 0.4 1.5 2 0 0 2 2 2 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 EME68027.1 - 1.6e-42 144.1 2.6 1.3e-41 141.1 1.9 2.3 2 0 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 EME68027.1 - 0.045 13.3 9.4 0.037 13.6 2.3 3.6 3 1 1 4 4 4 0 Beta-ketoacyl synthase, N-terminal domain ECH_1 PF00378.20 EME68028.1 - 1.4e-54 185.0 0.0 1.8e-54 184.7 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 EME68028.1 - 7.6e-27 94.7 0.1 1.1e-26 94.1 0.1 1.2 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase Acyl-CoA_dh_1 PF00441.24 EME68029.1 - 4.7e-19 69.1 10.1 7.6e-19 68.4 10.1 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 EME68030.1 - 7.8e-22 78.1 0.4 1.4e-21 77.2 0.4 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 EME68030.1 - 8.5e-21 74.0 0.0 1.4e-20 73.3 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_1 PF00441.24 EME68030.1 - 1.2e-06 28.8 0.1 3.8e-06 27.2 0.1 1.8 1 1 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain HpaB_N PF11794.8 EME68030.1 - 0.13 11.9 0.0 0.21 11.2 0.0 1.4 1 0 0 1 1 1 0 4-hydroxyphenylacetate 3-hydroxylase N terminal AMP-binding PF00501.28 EME68031.1 - 1.2e-93 314.1 0.0 1.4e-93 313.8 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 EME68031.1 - 1.1e-17 64.7 0.0 2.5e-17 63.6 0.0 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain HGD-D PF06050.13 EME68032.1 - 1.2e-46 160.0 0.0 1.4e-46 159.8 0.0 1.0 1 0 0 1 1 1 1 2-hydroxyglutaryl-CoA dehydratase, D-component KIX PF02172.16 EME68032.1 - 0.15 12.4 0.2 4.1 7.7 0.0 2.7 3 0 0 3 3 3 0 KIX domain Peripla_BP_6 PF13458.6 EME68033.1 - 1e-71 242.4 6.2 1.2e-71 242.2 6.2 1.0 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 EME68033.1 - 3.7e-27 95.3 0.0 4.5e-27 95.0 0.0 1.0 1 0 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.28 EME68033.1 - 9.5e-16 57.8 0.0 1.2e-15 57.5 0.0 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region LppC PF04348.13 EME68033.1 - 5e-06 25.6 0.0 5.9e-06 25.4 0.0 1.2 1 0 0 1 1 1 1 LppC putative lipoprotein adh_short PF00106.25 EME68034.1 - 1.4e-43 148.6 2.5 1.7e-43 148.4 2.5 1.0 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 EME68034.1 - 2e-41 142.1 1.9 2.7e-41 141.7 1.9 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 EME68034.1 - 1.5e-09 38.0 2.4 6.8e-09 35.9 2.4 2.1 1 1 0 1 1 1 1 KR domain Shikimate_DH PF01488.20 EME68034.1 - 0.0024 17.9 0.1 0.0045 17.0 0.1 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Epimerase PF01370.21 EME68034.1 - 0.0025 17.3 0.3 0.0042 16.6 0.3 1.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 EME68034.1 - 0.0083 15.3 0.2 0.013 14.6 0.2 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain NmrA PF05368.13 EME68034.1 - 0.048 13.2 0.9 0.075 12.6 0.9 1.2 1 0 0 1 1 1 0 NmrA-like family Glyco_transf_4 PF13439.6 EME68034.1 - 0.069 13.2 0.2 0.88 9.6 0.0 2.1 2 0 0 2 2 2 0 Glycosyltransferase Family 4 NAD_binding_10 PF13460.6 EME68034.1 - 0.11 12.4 1.7 0.16 11.8 1.7 1.5 1 1 0 1 1 1 0 NAD(P)H-binding BPD_transp_2 PF02653.16 EME68035.1 - 8.4e-39 133.3 38.5 1e-38 133.0 38.5 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Pox_A32 PF04665.12 EME68035.1 - 0.31 10.5 0.2 0.54 9.7 0.2 1.3 1 0 0 1 1 1 0 Poxvirus A32 protein BPD_transp_2 PF02653.16 EME68036.1 - 6.3e-38 130.5 38.0 6.3e-38 130.5 38.0 1.8 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component ABC_tran PF00005.27 EME68037.1 - 6.3e-26 91.5 0.0 8.1e-26 91.2 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 EME68037.1 - 0.00025 21.0 0.4 0.03 14.1 0.1 2.1 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 EME68037.1 - 0.0004 19.9 0.1 0.005 16.3 0.1 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 EME68037.1 - 0.00043 20.0 0.1 0.0009 18.9 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain BCA_ABC_TP_C PF12399.8 EME68037.1 - 0.0012 18.7 0.0 0.0021 17.9 0.0 1.4 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_23 PF13476.6 EME68037.1 - 0.0028 18.2 0.1 0.0037 17.8 0.1 1.2 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 EME68037.1 - 0.0066 16.4 0.1 0.011 15.6 0.1 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_30 PF13604.6 EME68037.1 - 0.0094 15.7 1.5 0.075 12.7 1.5 2.0 1 1 0 1 1 1 1 AAA domain AAA_27 PF13514.6 EME68037.1 - 0.012 15.3 0.1 0.021 14.4 0.1 1.4 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 EME68037.1 - 0.027 14.5 0.1 0.059 13.5 0.1 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase ATP_bind_1 PF03029.17 EME68037.1 - 0.028 14.2 0.1 0.044 13.5 0.1 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_16 PF13191.6 EME68037.1 - 0.032 14.6 0.2 0.039 14.3 0.2 1.5 1 1 0 1 1 1 0 AAA ATPase domain Dynamin_N PF00350.23 EME68037.1 - 0.053 13.6 0.1 0.092 12.8 0.1 1.3 1 0 0 1 1 1 0 Dynamin family AAA_10 PF12846.7 EME68037.1 - 0.068 12.1 0.1 0.11 11.4 0.1 1.3 1 0 0 1 1 1 0 AAA-like domain AAA_33 PF13671.6 EME68037.1 - 0.11 12.7 0.1 0.17 12.1 0.1 1.5 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.6 EME68037.1 - 0.16 11.6 0.0 0.22 11.2 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain ABC_tran PF00005.27 EME68038.1 - 1e-31 110.3 0.0 1.4e-31 109.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_29 PF13555.6 EME68038.1 - 2.3e-05 24.1 0.0 5.2e-05 22.9 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.6 EME68038.1 - 4.8e-05 23.0 0.1 0.012 15.2 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_21 PF13304.6 EME68038.1 - 0.00024 21.0 0.1 0.37 10.6 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 EME68038.1 - 0.00039 20.4 0.1 0.00059 19.8 0.1 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 EME68038.1 - 0.0018 18.7 0.0 0.0025 18.2 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 EME68038.1 - 0.0041 17.4 0.3 1 9.6 0.1 2.2 2 0 0 2 2 2 1 AAA domain MMR_HSR1 PF01926.23 EME68038.1 - 0.013 15.6 0.1 0.022 14.8 0.1 1.4 1 0 0 1 1 1 0 50S ribosome-binding GTPase SMC_N PF02463.19 EME68038.1 - 0.017 14.6 0.1 0.09 12.2 0.1 1.9 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain NACHT PF05729.12 EME68038.1 - 0.03 14.2 0.2 0.065 13.1 0.1 1.6 2 0 0 2 2 2 0 NACHT domain Fer4_NifH PF00142.18 EME68038.1 - 0.033 13.6 0.3 0.7 9.3 0.1 2.1 2 0 0 2 2 2 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family IstB_IS21 PF01695.17 EME68038.1 - 0.065 13.0 0.1 0.79 9.4 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein DUF815 PF05673.13 EME68038.1 - 0.096 11.8 0.1 0.14 11.3 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_23 PF13476.6 EME68038.1 - 0.14 12.6 0.0 0.2 12.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 EME68038.1 - 0.16 11.4 0.0 0.25 10.8 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region TrwB_AAD_bind PF10412.9 EME68038.1 - 0.24 10.3 1.2 0.49 9.3 0.2 1.8 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain MCPsignal PF00015.21 EME68039.1 - 2.7e-32 112.0 46.8 5.1e-32 111.0 23.1 3.0 2 1 1 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 EME68039.1 - 6.3e-09 36.1 3.0 2.2e-08 34.3 0.1 3.5 4 0 0 4 4 4 1 HAMP domain DUF948 PF06103.11 EME68039.1 - 1.6e-05 25.0 21.4 0.001 19.3 1.8 5.6 3 1 4 7 7 7 4 Bacterial protein of unknown function (DUF948) IFT57 PF10498.9 EME68039.1 - 0.045 12.7 1.5 0.33 9.9 0.1 2.3 2 0 0 2 2 2 0 Intra-flagellar transport protein 57 DUF1664 PF07889.12 EME68039.1 - 0.14 12.2 13.2 1.1 9.4 1.7 3.8 2 2 2 4 4 4 0 Protein of unknown function (DUF1664) DUF1805 PF08827.11 EME68039.1 - 0.35 11.2 2.7 0.86 10.0 0.4 3.0 2 1 1 3 3 3 0 Domain of unknown function (DUF1805) Laminin_II PF06009.12 EME68039.1 - 0.71 9.9 17.7 3.7 7.6 0.6 4.3 1 1 2 4 4 4 0 Laminin Domain II Usp PF00582.26 EME68041.1 - 4.1e-06 27.3 0.1 4.4e-06 27.2 0.1 1.2 1 0 0 1 1 1 1 Universal stress protein family Root_cap PF06830.11 EME68041.1 - 0.056 13.6 0.0 0.087 13.0 0.0 1.3 1 0 0 1 1 1 0 Root cap DUF2490 PF10677.9 EME68042.1 - 0.011 15.7 0.3 0.23 11.4 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2490) Response_reg PF00072.24 EME68043.1 - 1.7e-20 73.2 0.0 2.6e-20 72.7 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain GerE PF00196.19 EME68043.1 - 5.9e-13 48.2 0.2 9.2e-13 47.5 0.2 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4 PF04545.16 EME68043.1 - 0.00073 19.0 0.3 0.0015 18.0 0.3 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.12 EME68043.1 - 0.0067 16.1 0.1 0.015 15.0 0.1 1.6 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_Tnp_ISL3 PF13542.6 EME68043.1 - 0.007 15.8 0.0 2.9 7.4 0.0 2.5 2 0 0 2 2 2 2 Helix-turn-helix domain of transposase family ISL3 DUF2089 PF09862.9 EME68043.1 - 0.11 12.5 0.0 0.16 12.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2089) MASE1 PF05231.14 EME68044.1 - 2.2e-15 56.6 38.1 3.3e-15 56.0 38.1 1.2 1 0 0 1 1 1 1 MASE1 HATPase_c PF02518.26 EME68044.1 - 8.4e-14 52.0 0.0 1.3e-13 51.4 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 EME68044.1 - 1.3e-06 28.3 0.1 3.8e-06 26.8 0.1 1.8 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain MM_CoA_mutase PF01642.22 EME68044.1 - 0.029 13.0 0.0 0.047 12.3 0.0 1.2 1 0 0 1 1 1 0 Methylmalonyl-CoA mutase HATPase_c_5 PF14501.6 EME68044.1 - 0.069 13.1 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 GHKL domain Phage_integrase PF00589.22 EME68045.1 - 1.3e-25 90.2 0.3 1.4e-25 90.0 0.3 1.0 1 0 0 1 1 1 1 Phage integrase family Phage_integr_3 PF16795.5 EME68045.1 - 0.0027 17.6 0.2 0.016 15.1 0.2 1.9 1 1 0 1 1 1 1 Archaeal phage integrase Saccharop_dh_N PF04455.12 EME68046.1 - 0.007 16.8 0.0 0.0079 16.6 0.0 1.1 1 0 0 1 1 1 1 LOR/SDH bifunctional enzyme conserved region ALG3 PF05208.13 EME68046.1 - 0.057 12.8 0.0 0.067 12.6 0.0 1.1 1 0 0 1 1 1 0 ALG3 protein Rick_17kDa_Anti PF05433.15 EME68047.1 - 6.6e-06 25.9 12.7 6.6e-06 25.9 12.7 2.2 3 0 0 3 3 3 1 Glycine zipper 2TM domain 17kDa_Anti_2 PF16998.5 EME68047.1 - 0.00059 19.7 0.6 0.00085 19.2 0.6 1.3 1 0 0 1 1 1 1 17 kDa outer membrane surface antigen Gly-zipper_YMGG PF13441.6 EME68047.1 - 0.00065 19.4 13.4 0.00065 19.4 13.4 2.2 3 0 0 3 3 3 1 YMGG-like Gly-zipper DUF5061 PF16587.5 EME68047.1 - 0.041 13.9 2.8 0.05 13.7 1.1 2.0 2 1 0 2 2 2 0 17 kDa common-antigen outer membrane protein Gly-zipper_Omp PF13488.6 EME68047.1 - 0.11 12.5 14.6 0.065 13.2 10.3 2.6 2 1 1 3 3 3 0 Glycine zipper ATPase_gene1 PF09527.10 EME68047.1 - 0.25 11.5 6.2 0.5 10.6 6.2 1.5 1 0 0 1 1 1 0 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter TraT PF05818.12 EME68047.1 - 0.36 10.5 2.8 0.52 10.0 2.8 1.3 1 0 0 1 1 1 0 Enterobacterial TraT complement resistance protein Phage_integrase PF00589.22 EME68048.1 - 2e-10 40.7 0.0 4.1e-10 39.7 0.0 1.5 1 0 0 1 1 1 1 Phage integrase family Sugarporin_N PF11471.8 EME68048.1 - 0.094 12.7 4.7 0.11 12.4 3.2 2.1 1 1 1 2 2 2 0 Maltoporin periplasmic N-terminal extension Pertus-S5-tox PF09276.10 EME68048.1 - 0.19 11.8 0.7 0.58 10.2 0.2 2.0 2 1 0 2 2 2 0 Pertussis toxin S5 subunit MobA_MobL PF03389.15 EME68049.1 - 2.1e-36 125.7 0.3 2.1e-36 125.7 0.3 2.2 2 2 0 2 2 2 1 MobA/MobL family DUF4859 PF16151.5 EME68049.1 - 0.0084 16.0 0.0 0.024 14.5 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4859) DUF3847 PF12958.7 EME68050.1 - 0.0054 16.8 3.3 0.0063 16.6 3.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3847) N36 PF11438.8 EME68051.1 - 0.3 10.9 0.0 0.3 10.9 0.0 3.0 3 0 0 3 3 3 0 36-mer N-terminal peptide of the N protein (N36) Prok-E2_E PF14462.6 EME68052.1 - 1.4e-34 118.6 0.0 1.5e-34 118.5 0.0 1.0 1 0 0 1 1 1 1 Prokaryotic E2 family E ThiF PF00899.21 EME68053.1 - 1.2e-22 80.4 0.7 1.7e-22 80.0 0.7 1.1 1 0 0 1 1 1 1 ThiF family 2-Hacid_dh_C PF02826.19 EME68053.1 - 0.00074 18.9 0.2 0.0013 18.1 0.1 1.5 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PALP PF00291.25 EME68053.1 - 0.0065 15.9 0.7 0.0091 15.4 0.7 1.3 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme DAO PF01266.24 EME68053.1 - 0.021 14.4 0.2 0.024 14.3 0.2 1.2 1 0 0 1 1 1 0 FAD dependent oxidoreductase PglD_N PF17836.1 EME68053.1 - 0.022 15.4 0.0 0.033 14.8 0.0 1.2 1 0 0 1 1 1 0 PglD N-terminal domain FAD_binding_3 PF01494.19 EME68053.1 - 0.022 14.0 0.4 0.024 13.9 0.4 1.2 1 0 0 1 1 1 0 FAD binding domain Sacchrp_dh_NADP PF03435.18 EME68053.1 - 0.059 13.6 0.2 0.083 13.1 0.2 1.3 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain ApbA PF02558.16 EME68053.1 - 0.13 11.9 0.2 0.19 11.4 0.2 1.2 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA DUF2190 PF09956.9 EME68054.1 - 1.2e-19 70.6 8.0 1.5e-19 70.4 8.0 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2190) STAS_2 PF13466.6 EME68055.1 - 0.0022 18.3 0.5 0.0028 17.9 0.5 1.1 1 0 0 1 1 1 1 STAS domain Mu-like_gpT PF10124.9 EME68056.1 - 2.8e-13 49.8 0.0 1.1e-05 24.9 0.0 2.1 1 1 1 2 2 2 2 Mu-like prophage major head subunit gpT Peptidase_S78 PF04586.17 EME68056.1 - 2.3e-05 24.6 0.0 4.1e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 Caudovirus prohead serine protease Phage_portal_2 PF05136.13 EME68057.1 - 5.2e-101 338.4 0.0 6.6e-101 338.1 0.0 1.1 1 0 0 1 1 1 1 Phage portal protein, lambda family FLgD_tudor PF13861.6 EME68059.1 - 0.00088 19.5 0.0 0.013 15.7 0.0 3.1 2 1 0 2 2 2 1 FlgD Tudor-like domain DUF3787 PF12655.7 EME68060.1 - 0.071 13.0 0.2 0.15 12.0 0.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3787) DDE_Tnp_IS1595 PF12762.7 EME68062.1 - 1.5e-25 90.0 0.0 2.8e-25 89.1 0.0 1.5 1 0 0 1 1 1 1 ISXO2-like transposase domain VWA_2 PF13519.6 EME68063.1 - 1.7e-06 28.6 0.0 4.5e-06 27.3 0.0 1.8 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA PF00092.28 EME68063.1 - 5.6e-05 23.5 0.0 8.6e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 EME68063.1 - 0.00091 18.7 0.0 0.0031 16.9 0.0 1.8 2 0 0 2 2 2 1 VWA domain containing CoxE-like protein ATPase_gene1 PF09527.10 EME68063.1 - 0.046 13.9 0.1 0.12 12.6 0.1 1.7 1 0 0 1 1 1 0 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter Citrate_synt PF00285.21 EME68063.1 - 0.1 11.6 0.1 0.87 8.6 0.2 2.3 3 0 0 3 3 3 0 Citrate synthase, C-terminal domain GT-D PF08759.11 EME68063.1 - 0.15 11.7 0.0 0.73 9.5 0.0 1.9 2 0 0 2 2 2 0 Glycosyltransferase GT-D fold VPDSG-CTERM PF18205.1 EME68063.1 - 0.62 9.9 2.3 1.3 8.9 2.3 1.6 1 0 0 1 1 1 0 VPDSG-CTERM motif FapA PF03961.13 EME68064.1 - 0.00093 17.9 2.7 0.0011 17.7 2.7 1.0 1 0 0 1 1 1 1 Flagellar Assembly Protein A FRP PF18032.1 EME68064.1 - 0.052 14.2 3.5 2.4 8.8 0.4 3.1 2 1 0 2 2 2 0 Photoprotection regulator fluorescence recovery protein Fez1 PF06818.15 EME68064.1 - 0.067 13.6 8.2 0.085 13.3 8.2 1.1 1 0 0 1 1 1 0 Fez1 Atg14 PF10186.9 EME68064.1 - 0.13 11.3 4.6 0.16 11.0 4.6 1.1 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 DUF1284 PF06935.11 EME68064.1 - 0.17 12.3 0.4 0.32 11.4 0.3 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1284) DUF4795 PF16043.5 EME68064.1 - 0.2 11.2 8.0 0.24 11.0 8.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4795) FUSC PF04632.12 EME68064.1 - 0.49 8.9 4.1 0.55 8.7 4.1 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein family Remorin_C PF03763.13 EME68064.1 - 0.67 9.9 10.9 0.7 9.8 1.3 2.5 1 1 1 2 2 2 0 Remorin, C-terminal region LPP PF04728.13 EME68064.1 - 0.81 10.1 4.4 10 6.6 3.9 2.6 2 1 0 2 2 2 0 Lipoprotein leucine-zipper DUF4407 PF14362.6 EME68064.1 - 0.88 8.9 7.8 1.2 8.5 7.8 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) Topoisom_I_N PF02919.15 EME68064.1 - 1.2 8.6 4.3 0.75 9.3 2.2 1.5 1 1 1 2 2 2 0 Eukaryotic DNA topoisomerase I, DNA binding fragment YabA PF06156.13 EME68064.1 - 1.6 9.4 5.0 10 6.9 5.0 2.1 1 1 0 1 1 1 0 Initiation control protein YabA M PF02370.16 EME68064.1 - 3.9 8.4 7.0 9.9 7.1 0.1 3.7 4 0 0 4 4 3 0 M protein repeat Terminase_GpA PF05876.12 EME68066.1 - 6.3e-196 652.2 0.0 8.4e-196 651.8 0.0 1.0 1 0 0 1 1 1 1 Phage terminase large subunit (GpA) KAAG1 PF15354.6 EME68066.1 - 0.22 12.1 0.1 0.22 12.1 0.1 2.5 2 0 0 2 2 2 0 Kidney-associated antigen 1 MarR_2 PF12802.7 EME68067.1 - 0.024 14.5 0.2 2 8.4 0.0 2.4 2 0 0 2 2 2 0 MarR family KORA PF16509.5 EME68067.1 - 0.03 14.6 0.0 0.094 13.0 0.0 1.9 2 0 0 2 2 2 0 TrfB plasmid transcriptional repressor PriCT_2 PF08707.11 EME68068.1 - 1.7e-16 60.3 0.1 1.6e-15 57.2 0.0 2.3 2 0 0 2 2 2 1 Primase C terminal 2 (PriCT-2) Ala_racemase_N PF01168.20 EME68069.1 - 1.2e-07 31.6 0.3 1.3e-07 31.5 0.3 1.0 1 0 0 1 1 1 1 Alanine racemase, N-terminal domain GTP_cyclohydro2 PF00925.20 EME68071.1 - 5.8e-61 204.8 0.0 1.2e-60 203.9 0.0 1.4 2 0 0 2 2 2 1 GTP cyclohydrolase II DHBP_synthase PF00926.19 EME68071.1 - 0.00033 20.2 0.5 0.15 11.5 0.0 2.3 2 0 0 2 2 2 2 3,4-dihydroxy-2-butanone 4-phosphate synthase Trans_reg_C PF00486.28 EME68072.1 - 1.6e-17 63.4 0.2 4e-17 62.1 0.1 1.7 2 0 0 2 2 2 1 Transcriptional regulatory protein, C terminal Response_reg PF00072.24 EME68072.1 - 0.0084 16.3 0.0 0.014 15.5 0.0 1.4 1 0 0 1 1 1 1 Response regulator receiver domain Exo_endo_phos PF03372.23 EME68073.1 - 2.8e-21 76.1 0.3 3.2e-21 75.9 0.3 1.0 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family LolA PF03548.15 EME68074.1 - 4.2e-23 81.9 0.0 5e-23 81.6 0.0 1.1 1 0 0 1 1 1 1 Outer membrane lipoprotein carrier protein LolA FtsK_SpoIIIE PF01580.18 EME68075.1 - 6.1e-65 219.0 0.2 9.7e-65 218.3 0.2 1.3 1 0 0 1 1 1 1 FtsK/SpoIIIE family FtsK_alpha PF17854.1 EME68075.1 - 1e-29 102.6 0.0 1.8e-29 101.8 0.0 1.4 1 0 0 1 1 1 1 FtsK alpha domain FtsK_gamma PF09397.10 EME68075.1 - 5.3e-27 93.4 0.0 1.1e-26 92.4 0.0 1.6 1 0 0 1 1 1 1 Ftsk gamma domain FtsK_4TM PF13491.6 EME68075.1 - 5.1e-18 65.4 18.2 7.7e-18 64.8 18.2 1.3 1 0 0 1 1 1 1 4TM region of DNA translocase FtsK/SpoIIIE AAA_10 PF12846.7 EME68075.1 - 3.9e-06 26.0 0.0 0.0021 17.0 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain DUF87 PF01935.17 EME68075.1 - 1.8e-05 25.0 0.1 3.2e-05 24.1 0.1 1.3 1 0 0 1 1 1 1 Helicase HerA, central domain T2SSE PF00437.20 EME68075.1 - 0.0021 17.2 0.0 0.0039 16.3 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein TrwB_AAD_bind PF10412.9 EME68075.1 - 0.0051 15.8 0.0 0.0095 14.9 0.0 1.4 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain TniB PF05621.11 EME68075.1 - 0.0092 15.4 0.0 1 8.7 0.0 2.9 3 0 0 3 3 3 1 Bacterial TniB protein AAA_22 PF13401.6 EME68075.1 - 0.023 15.0 0.0 0.18 12.0 0.0 2.3 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.6 EME68075.1 - 0.073 13.4 0.2 0.44 10.9 0.2 2.1 1 1 0 1 1 1 0 AAA domain DEAD PF00270.29 EME68075.1 - 0.076 12.8 0.1 0.31 10.8 0.1 1.9 1 1 0 1 1 1 0 DEAD/DEAH box helicase AAA_29 PF13555.6 EME68075.1 - 0.097 12.4 0.0 0.28 10.9 0.0 1.8 1 0 0 1 1 1 0 P-loop containing region of AAA domain Aminotran_1_2 PF00155.21 EME68076.1 - 1.4e-33 116.6 0.0 1.5e-33 116.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.7 EME68076.1 - 0.14 10.9 0.0 0.21 10.3 0.0 1.2 1 0 0 1 1 1 0 Alanine-glyoxylate amino-transferase Cys_Met_Meta_PP PF01053.20 EME68076.1 - 0.18 10.3 0.0 0.26 9.8 0.0 1.1 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Ammonium_transp PF00909.21 EME68077.1 - 1.3e-120 402.7 41.1 1.5e-120 402.6 41.1 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family P-II PF00543.22 EME68078.1 - 1e-43 148.1 1.6 1.1e-43 147.9 1.6 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II DUF3240 PF11582.8 EME68078.1 - 0.0057 16.8 0.0 0.0066 16.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3240) SHS2_FTSA PF02491.20 EME68078.1 - 0.022 15.1 0.1 8.7 6.8 0.1 2.2 2 0 0 2 2 2 0 SHS2 domain inserted in FTSA Cdc6_C PF09079.11 EME68078.1 - 0.06 13.3 0.0 0.24 11.4 0.0 1.8 2 0 0 2 2 2 0 CDC6, C terminal winged helix domain SecB PF02556.14 EME68078.1 - 0.11 12.4 0.1 0.13 12.2 0.1 1.1 1 0 0 1 1 1 0 Preprotein translocase subunit SecB DUF3574 PF12098.8 EME68078.1 - 0.11 12.2 0.1 0.28 11.0 0.0 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3574) FAD_binding_3 PF01494.19 EME68079.1 - 7.7e-28 97.7 0.1 1.1e-27 97.3 0.1 1.1 1 0 0 1 1 1 1 FAD binding domain Lycopene_cycl PF05834.12 EME68079.1 - 0.00014 21.1 1.2 0.5 9.4 0.4 3.2 3 0 0 3 3 3 2 Lycopene cyclase protein SE PF08491.10 EME68079.1 - 0.0008 18.5 0.1 0.0013 17.9 0.1 1.3 1 0 0 1 1 1 1 Squalene epoxidase Pyr_redox_2 PF07992.14 EME68079.1 - 0.0013 18.0 0.1 0.35 10.1 0.3 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 EME68079.1 - 0.46 9.3 2.1 15 4.2 0.6 2.2 2 1 0 2 2 2 0 Tryptophan halogenase DAO PF01266.24 EME68079.1 - 7.3 6.1 10.9 20 4.6 5.5 2.5 2 1 1 3 3 3 0 FAD dependent oxidoreductase tRNA_edit PF04073.15 EME68080.1 - 5.9e-27 94.2 0.2 7.9e-27 93.8 0.2 1.1 1 0 0 1 1 1 1 Aminoacyl-tRNA editing domain zf-CHCC PF10276.9 EME68080.1 - 0.14 12.3 0.0 0.24 11.5 0.0 1.5 1 0 0 1 1 1 0 Zinc-finger domain DUF971 PF06155.12 EME68081.1 - 1.9e-28 99.0 0.0 2.3e-28 98.7 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF971) DUF2442 PF10387.9 EME68081.1 - 0.011 16.0 0.0 0.33 11.3 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2442) DUF1266 PF06889.11 EME68081.1 - 0.1 12.6 0.0 0.13 12.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1266) Trm112p PF03966.16 EME68082.1 - 0.00028 21.4 0.0 0.00081 19.9 0.0 1.7 1 1 0 1 1 1 1 Trm112p-like protein LON_substr_bdg PF02190.16 EME68083.1 - 7.7e-20 71.7 0.0 3.9e-19 69.4 0.0 1.8 1 1 0 1 1 1 1 ATP-dependent protease La (LON) substrate-binding domain TPR_20 PF14561.6 EME68084.1 - 1.3e-30 105.5 9.5 1.3e-30 105.5 0.7 3.2 4 0 0 4 4 3 1 Tetratricopeptide repeat Thioredoxin PF00085.20 EME68084.1 - 1e-19 70.4 0.0 1.6e-19 69.8 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin TPR_19 PF14559.6 EME68084.1 - 2.5e-15 56.7 17.7 9.2e-13 48.5 3.9 2.8 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_6 PF13174.6 EME68084.1 - 8.9e-06 26.0 7.2 0.16 12.7 0.0 3.8 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_16 PF13432.6 EME68084.1 - 7.9e-05 23.2 20.7 0.023 15.3 3.8 2.8 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_14 PF13428.6 EME68084.1 - 0.00041 20.9 21.1 0.078 13.8 0.1 4.3 1 1 3 4 4 4 2 Tetratricopeptide repeat OST3_OST6 PF04756.13 EME68084.1 - 0.00055 19.4 0.0 0.00078 18.9 0.0 1.2 1 0 0 1 1 1 1 OST3 / OST6 family, transporter family ANAPC3 PF12895.7 EME68084.1 - 0.0011 19.1 0.2 0.46 10.7 0.2 2.3 2 0 0 2 2 2 1 Anaphase-promoting complex, cyclosome, subunit 3 Alkyl_sulf_dimr PF14863.6 EME68084.1 - 0.002 18.6 0.6 0.33 11.4 0.0 2.3 2 0 0 2 2 2 1 Alkyl sulfatase dimerisation Thioredoxin_2 PF13098.6 EME68084.1 - 0.0022 18.4 0.0 0.017 15.6 0.0 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain DUF935 PF06074.12 EME68084.1 - 0.0041 15.9 0.5 0.0052 15.6 0.5 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF935) TPR_17 PF13431.6 EME68084.1 - 0.0059 16.9 0.8 0.15 12.5 0.1 2.6 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_15 PF13429.6 EME68084.1 - 0.0092 15.2 4.8 0.017 14.4 4.7 1.4 1 1 0 1 1 1 1 Tetratricopeptide repeat TraF PF13728.6 EME68084.1 - 0.02 14.7 0.0 0.029 14.2 0.0 1.2 1 0 0 1 1 1 0 F plasmid transfer operon protein DUF892 PF05974.12 EME68084.1 - 0.029 14.4 1.7 0.066 13.2 1.6 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF892) DSBA PF01323.20 EME68084.1 - 0.042 13.6 7.1 0.73 9.6 0.1 2.6 2 1 1 3 3 3 0 DSBA-like thioredoxin domain Thioredoxin_3 PF13192.6 EME68084.1 - 0.063 13.3 0.0 0.14 12.2 0.0 1.6 1 0 0 1 1 1 0 Thioredoxin domain Thioredoxin_7 PF13899.6 EME68084.1 - 0.081 13.1 0.0 0.19 12.0 0.0 1.6 1 0 0 1 1 1 0 Thioredoxin-like DUF1488 PF07369.11 EME68084.1 - 0.16 12.0 0.6 0.49 10.4 0.1 2.0 2 0 0 2 2 1 0 Protein of unknown function (DUF1488) DIM1 PF02966.16 EME68084.1 - 0.17 11.7 0.0 0.27 11.0 0.0 1.3 1 0 0 1 1 1 0 Mitosis protein DIM1 TPR_2 PF07719.17 EME68084.1 - 0.19 12.0 6.1 5.1 7.5 1.6 3.3 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_9 PF13371.6 EME68084.1 - 1.2 9.3 12.2 0.25 11.5 3.2 2.9 1 1 0 2 2 2 0 Tetratricopeptide repeat HTH_3 PF01381.22 EME68085.1 - 2.3e-16 59.6 0.1 2.7e-16 59.4 0.1 1.1 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 EME68085.1 - 1.2e-11 44.5 0.0 1.3e-11 44.4 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 EME68085.1 - 2.4e-11 43.8 0.2 2.9e-11 43.6 0.2 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 EME68085.1 - 8e-07 29.4 0.0 9.9e-07 29.1 0.0 1.1 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_25 PF13413.6 EME68085.1 - 0.0016 18.3 0.1 0.0036 17.1 0.0 1.6 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_37 PF13744.6 EME68085.1 - 0.0072 16.3 0.0 0.0079 16.1 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 EME68085.1 - 0.037 13.9 0.0 1.1 9.2 0.0 2.1 2 0 0 2 2 2 0 MarR family Pou PF00157.17 EME68085.1 - 0.068 13.2 0.2 0.12 12.3 0.2 1.5 1 1 0 1 1 1 0 Pou domain - N-terminal to homeobox domain Cytochrom_C_asm PF01578.20 EME68086.1 - 5.4e-13 49.2 15.4 2e-12 47.3 15.4 2.1 1 1 0 1 1 1 1 Cytochrome C assembly protein CD20 PF04103.15 EME68086.1 - 5.4 7.1 7.2 1.7 8.7 3.2 2.2 2 0 0 2 2 2 0 CD20-like family Peptidase_S8 PF00082.22 EME68087.1 - 3.4e-07 29.8 1.0 0.0014 18.0 0.0 2.4 2 1 0 3 3 3 2 Subtilase family ABC_membrane PF00664.23 EME68088.1 - 5e-37 128.0 0.0 6e-37 127.8 0.0 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 EME68088.1 - 4.5e-29 101.7 0.0 6.5e-29 101.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_16 PF13191.6 EME68088.1 - 4.9e-06 27.0 0.8 4.9e-06 27.0 0.8 1.9 2 0 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.19 EME68088.1 - 0.00094 18.7 0.0 0.0038 16.7 0.0 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 EME68088.1 - 0.006 16.3 0.1 0.018 14.7 0.1 1.8 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 EME68088.1 - 0.013 15.4 0.0 0.027 14.4 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase MeaB PF03308.16 EME68088.1 - 0.032 13.2 0.3 0.85 8.5 0.0 2.3 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_21 PF13304.6 EME68088.1 - 0.07 12.9 0.0 0.63 9.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 EME68088.1 - 0.1 12.8 0.0 0.4 11.0 0.0 2.0 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.6 EME68088.1 - 0.14 12.7 0.1 1.1 9.9 0.0 2.3 2 1 0 2 2 2 0 AAA domain DUF815 PF05673.13 EME68088.1 - 0.15 11.2 0.0 0.25 10.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_24 PF13479.6 EME68088.1 - 0.21 11.3 0.0 0.4 10.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 EME68088.1 - 9.3 5.8 7.8 2.6 7.6 2.2 2.8 2 1 0 2 2 2 0 AAA domain PQQ_2 PF13360.6 EME68089.1 - 0.00082 19.0 0.0 0.03 13.9 0.0 2.7 1 1 1 2 2 2 2 PQQ-like domain QH-AmDH_gamma PF08992.11 EME68090.1 - 5.1e-42 141.8 5.0 6.5e-42 141.4 5.0 1.1 1 0 0 1 1 1 1 Quinohemoprotein amine dehydrogenase, gamma subunit Radical_SAM PF04055.21 EME68091.1 - 5e-12 46.5 0.0 9.7e-12 45.6 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 EME68091.1 - 2.2e-11 44.2 0.0 3.8e-11 43.4 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 EME68091.1 - 8.6e-06 25.9 0.0 1.5e-05 25.1 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain PqqD PF05402.12 EME68091.1 - 0.00045 20.4 0.0 0.0026 18.0 0.0 2.3 3 0 0 3 3 3 1 Coenzyme PQQ synthesis protein D (PqqD) Dehyd-heme_bind PF09098.10 EME68092.1 - 1.1e-64 217.0 1.4 1.7e-64 216.4 1.4 1.3 1 0 0 1 1 1 1 Quinohemoprotein amine dehydrogenase A, alpha subunit, haem binding Qn_am_d_aIV PF09100.10 EME68092.1 - 2.5e-36 124.4 0.2 5.5e-36 123.3 0.2 1.6 1 0 0 1 1 1 1 Quinohemoprotein amine dehydrogenase, alpha subunit domain IV Qn_am_d_aII PF14930.6 EME68092.1 - 3.7e-32 110.8 4.0 7.5e-32 109.8 4.0 1.5 1 0 0 1 1 1 1 Quinohemoprotein amine dehydrogenase, alpha subunit domain II Qn_am_d_aIII PF09099.10 EME68092.1 - 6.5e-18 64.9 2.5 1.2e-17 64.1 1.3 2.0 1 1 1 2 2 2 1 Quinohemoprotein amine dehydrogenase, alpha subunit domain III Cytochrome_CBB3 PF13442.6 EME68092.1 - 0.00021 21.5 0.2 0.064 13.6 0.0 2.8 2 0 0 2 2 2 1 Cytochrome C oxidase, cbb3-type, subunit III Paired_CXXCH_1 PF09699.10 EME68092.1 - 0.027 14.2 0.1 8.1 6.3 0.0 2.4 2 0 0 2 2 2 0 Doubled CXXCH motif (Paired_CXXCH_1) Cytochrome_C7 PF14522.6 EME68092.1 - 0.042 13.8 0.0 11 6.2 0.0 2.3 2 0 0 2 2 2 0 Cytochrome c7 and related cytochrome c DUF4129 PF13559.6 EME68092.1 - 0.14 12.4 6.0 0.58 10.5 6.0 2.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4129) Cytochrom_C PF00034.21 EME68092.1 - 0.23 12.6 1.5 69 4.7 0.0 3.3 2 1 0 2 2 2 0 Cytochrome c Aldedh PF00171.22 EME68093.1 - 2.7e-178 593.2 0.1 3.1e-178 593.0 0.1 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family PSII_BNR PF14870.6 EME68094.1 - 2.3e-23 82.9 3.0 1.8e-15 57.0 0.7 2.3 1 1 1 2 2 2 2 Photosynthesis system II assembly factor YCF48 BNR PF02012.20 EME68094.1 - 5e-10 37.8 12.0 0.66 10.2 0.4 5.6 5 0 0 5 5 5 5 BNR/Asp-box repeat Sortilin-Vps10 PF15902.5 EME68094.1 - 2.2e-08 33.4 0.0 0.00088 18.2 0.0 3.1 1 1 2 4 4 4 4 Sortilin, neurotensin receptor 3, BNR_2 PF13088.6 EME68094.1 - 3.7e-08 33.0 4.0 0.39 10.0 0.0 4.4 1 1 2 4 4 4 4 BNR repeat-like domain DUF4185 PF13810.6 EME68094.1 - 0.00029 20.2 1.4 3.9 6.6 0.0 4.4 1 1 3 5 5 5 1 Domain of unknown function (DUF4185) MMPL PF03176.15 EME68095.1 - 2.1e-24 86.1 22.6 2.7e-14 52.8 11.3 2.4 2 0 0 2 2 2 2 MMPL family ACR_tran PF00873.19 EME68095.1 - 4.1e-16 57.9 21.1 6.4e-11 40.7 8.2 2.0 2 0 0 2 2 2 2 AcrB/AcrD/AcrF family Patched PF02460.18 EME68095.1 - 0.0011 17.1 3.4 0.0011 17.1 3.4 2.7 3 0 0 3 3 3 2 Patched family DUF1302 PF06980.11 EME68096.1 - 2.9e-153 511.6 4.4 3.3e-153 511.3 4.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1302) SH3_2 PF07653.17 EME68096.1 - 0.13 12.0 0.0 0.27 10.9 0.0 1.4 1 0 0 1 1 1 0 Variant SH3 domain DUF1329 PF07044.11 EME68097.1 - 5.8e-120 400.9 2.3 6.9e-120 400.6 2.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1329) LolA_like PF17131.4 EME68097.1 - 4.5e-07 29.8 0.1 0.0051 16.6 0.1 2.4 2 0 0 2 2 2 2 Outer membrane lipoprotein-sorting protein GerE PF00196.19 EME68098.1 - 2.4e-21 75.0 0.9 3.5e-21 74.5 0.9 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Response_reg PF00072.24 EME68098.1 - 1.7e-19 70.0 0.0 2.5e-19 69.5 0.0 1.2 1 0 0 1 1 1 1 Response regulator receiver domain Sigma70_r4 PF04545.16 EME68098.1 - 1.3e-07 31.0 0.3 2.4e-07 30.2 0.3 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.12 EME68098.1 - 1.3e-06 27.9 0.4 2.4e-06 27.1 0.4 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_7 PF02796.15 EME68098.1 - 0.0019 18.2 0.0 0.0085 16.1 0.1 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain of resolvase DUF2089 PF09862.9 EME68098.1 - 0.0044 17.0 0.0 0.0063 16.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2089) HTH_10 PF04967.12 EME68098.1 - 0.0095 15.7 2.1 0.094 12.5 0.3 2.4 2 0 0 2 2 2 1 HTH DNA binding domain HTH_20 PF12840.7 EME68098.1 - 0.027 14.6 0.0 0.05 13.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Trp_repressor PF01371.19 EME68098.1 - 0.061 13.5 0.0 0.11 12.6 0.0 1.4 1 0 0 1 1 1 0 Trp repressor protein HTH_11 PF08279.12 EME68098.1 - 0.064 13.2 0.5 0.13 12.2 0.5 1.5 1 0 0 1 1 1 0 HTH domain HTH_40 PF14493.6 EME68098.1 - 0.15 12.6 0.2 0.32 11.5 0.2 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain Radical_SAM PF04055.21 EME68099.1 - 2.9e-25 89.6 0.0 6.9e-25 88.3 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily Nitro_FeMo-Co PF02579.17 EME68099.1 - 1.3e-20 73.6 0.8 2.1e-20 72.8 0.1 1.8 2 0 0 2 2 2 1 Dinitrogenase iron-molybdenum cofactor Fer4 PF00037.27 EME68100.1 - 2.2e-06 27.2 2.7 2.2e-06 27.2 2.7 3.1 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_7 PF12838.7 EME68100.1 - 3.9e-06 27.3 13.5 7.7e-06 26.4 13.5 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 EME68100.1 - 9.8e-06 25.6 14.4 1.4e-05 25.1 14.4 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 EME68100.1 - 4.7e-05 23.4 14.7 4.7e-05 23.4 14.7 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 EME68100.1 - 0.00016 21.8 14.7 0.00025 21.2 14.7 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 EME68100.1 - 0.00016 21.5 12.8 0.02 15.0 2.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 EME68100.1 - 0.00087 20.2 15.9 0.021 15.8 8.7 2.2 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 EME68100.1 - 0.0026 18.2 14.9 0.016 15.6 3.9 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 EME68100.1 - 0.0065 17.0 14.6 0.0083 16.7 4.0 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 EME68100.1 - 0.0095 16.0 2.7 0.0095 16.0 2.7 2.4 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_4 PF12800.7 EME68100.1 - 0.012 16.1 14.3 0.16 12.6 1.5 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.7 EME68100.1 - 0.44 11.6 20.7 1.7 9.8 4.9 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain NifZ PF04319.13 EME68101.1 - 2.2e-29 101.0 0.2 2.5e-29 100.8 0.2 1.1 1 0 0 1 1 1 1 NifZ domain NifT PF06988.11 EME68102.1 - 7.4e-28 96.1 0.5 8.4e-28 96.0 0.5 1.0 1 0 0 1 1 1 1 NifT/FixU protein SIR2_2 PF13289.6 EME68103.1 - 1.9e-23 83.1 0.0 2.6e-23 82.7 0.0 1.2 1 0 0 1 1 1 1 SIR2-like domain NHL PF01436.21 EME68103.1 - 0.15 12.1 0.0 0.37 10.9 0.0 1.6 1 0 0 1 1 1 0 NHL repeat Fer2 PF00111.27 EME68104.1 - 1.4e-11 44.1 1.1 2.9e-11 43.2 1.1 1.5 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain ArsC PF03960.15 EME68105.1 - 0.0002 21.3 0.0 0.00031 20.7 0.0 1.3 1 0 0 1 1 1 1 ArsC family Abhydrolase_1 PF00561.20 EME68105.1 - 0.021 14.5 0.0 0.027 14.1 0.0 1.1 1 0 0 1 1 1 0 alpha/beta hydrolase fold DUF2087 PF09860.9 EME68105.1 - 0.21 11.8 0.0 0.36 11.0 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2087) ADP_ribosyl_GH PF03747.14 EME68106.1 - 1e-60 205.9 6.7 9.2e-60 202.8 6.7 1.9 1 1 0 1 1 1 1 ADP-ribosylglycohydrolase DRAT PF07357.11 EME68107.1 - 1.1e-112 375.4 0.0 1.2e-112 375.3 0.0 1.0 1 0 0 1 1 1 1 Dinitrogenase reductase ADP-ribosyltransferase (DRAT) Fer4_NifH PF00142.18 EME68108.1 - 6.5e-133 442.3 1.3 7.4e-133 442.1 1.3 1.0 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CbiA PF01656.23 EME68108.1 - 4.6e-09 36.4 0.0 9.8e-09 35.3 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 EME68108.1 - 1.3e-08 35.0 0.5 2.6e-08 34.0 0.1 1.7 2 0 0 2 2 2 1 AAA domain ParA PF10609.9 EME68108.1 - 6.1e-07 29.1 0.4 0.00024 20.6 0.1 2.2 2 0 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 EME68108.1 - 8.4e-07 28.5 0.1 1.6e-06 27.5 0.1 1.5 1 0 0 1 1 1 1 Anion-transporting ATPase CBP_BcsQ PF06564.12 EME68108.1 - 0.00047 19.7 0.5 0.033 13.7 0.1 2.3 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ MeaB PF03308.16 EME68108.1 - 0.0027 16.8 0.1 0.0055 15.7 0.1 1.4 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB MipZ PF09140.11 EME68108.1 - 0.015 14.6 0.0 0.029 13.7 0.0 1.4 1 0 0 1 1 1 0 ATPase MipZ AAA_24 PF13479.6 EME68108.1 - 0.037 13.7 0.0 0.06 13.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 EME68108.1 - 0.12 12.0 0.1 0.26 10.9 0.1 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain DUF1896 PF08989.10 EME68108.1 - 0.14 12.3 0.0 0.25 11.4 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1896) DNA_ligase_A_N PF04675.14 EME68108.1 - 0.14 12.4 0.1 0.23 11.8 0.1 1.2 1 0 0 1 1 1 0 DNA ligase N terminus Oxidored_nitro PF00148.19 EME68109.1 - 7.5e-111 370.7 0.0 8.8e-111 370.5 0.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Oxidored_nitro PF00148.19 EME68110.1 - 1.1e-119 399.8 0.0 1.3e-119 399.5 0.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase DUF3364 PF11844.8 EME68110.1 - 1.9e-23 82.4 2.6 3.7e-23 81.5 2.6 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF3364) Oxidored_nitro PF00148.19 EME68111.1 - 1.1e-103 347.1 0.0 1.2e-103 346.9 0.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Med22 PF06179.12 EME68111.1 - 0.088 13.0 0.0 0.16 12.2 0.0 1.4 1 0 0 1 1 1 0 Surfeit locus protein 5 subunit 22 of Mediator complex DUF5612 PF18462.1 EME68111.1 - 0.12 12.1 0.0 0.41 10.5 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF5612) Nitro_FeMo-Co PF02579.17 EME68112.1 - 1.7e-18 66.7 0.0 2.1e-18 66.5 0.0 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor DUF269 PF03270.13 EME68113.1 - 2.1e-47 160.2 0.0 2.5e-47 159.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function, DUF269 Fer4_7 PF12838.7 EME68114.1 - 2.1e-08 34.6 10.4 3.8e-08 33.8 10.5 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 EME68114.1 - 2.3e-08 34.0 33.5 1.6e-05 25.0 13.2 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.27 EME68114.1 - 8.7e-08 31.7 20.0 4.8e-05 23.0 2.3 2.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.6 EME68114.1 - 2.3e-07 30.8 11.6 5.3e-07 29.7 11.6 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 EME68114.1 - 4e-07 30.9 7.4 6.4e-07 30.2 7.4 1.3 1 0 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_22 PF17179.4 EME68114.1 - 4.9e-07 30.5 6.4 0.00062 20.6 0.3 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 EME68114.1 - 1.4e-06 28.1 19.1 0.0001 22.2 2.4 2.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.6 EME68114.1 - 1.9e-06 27.9 13.4 1.4e-05 25.1 13.4 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 EME68114.1 - 3.1e-06 27.5 8.3 5.4e-06 26.8 8.3 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 EME68114.1 - 5.6e-05 23.3 13.9 0.018 15.5 3.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 EME68114.1 - 7.1e-05 22.7 16.5 0.0046 17.0 1.3 2.5 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 EME68114.1 - 0.00023 21.6 10.3 0.00054 20.5 10.4 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.7 EME68114.1 - 0.0018 19.1 18.4 0.07 14.1 4.4 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 EME68114.1 - 0.093 13.3 10.8 1.7 9.3 2.2 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 EME68114.1 - 0.11 12.7 10.9 1.3 9.3 2.3 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 EME68114.1 - 1.4 9.7 14.3 1.7 9.5 3.6 2.3 1 1 1 2 2 2 0 4Fe-4S single cluster domain NifQ PF04891.12 EME68115.1 - 5.8e-57 192.5 0.1 6.7e-57 192.3 0.1 1.0 1 0 0 1 1 1 1 NifQ CIMR PF00878.18 EME68115.1 - 0.075 13.1 0.0 0.11 12.5 0.0 1.2 1 0 0 1 1 1 0 Cation-independent mannose-6-phosphate receptor repeat Fe-S_biosyn PF01521.20 EME68116.1 - 1.4e-13 51.0 0.0 2.2e-13 50.4 0.0 1.3 1 0 0 1 1 1 1 Iron-sulphur cluster biosynthesis HMGL-like PF00682.19 EME68117.1 - 2.5e-83 279.7 1.5 3.4e-83 279.2 1.5 1.2 1 0 0 1 1 1 1 HMGL-like NifW PF03206.14 EME68118.1 - 1.1e-27 96.4 0.0 1.2e-27 96.3 0.0 1.0 1 0 0 1 1 1 1 Nitrogen fixation protein NifW MlaC PF05494.12 EME68120.1 - 1.8e-37 128.6 0.1 2.1e-37 128.4 0.1 1.1 1 0 0 1 1 1 1 MlaC protein MlaA PF04333.13 EME68121.1 - 3.4e-72 242.3 0.0 3.9e-72 242.0 0.0 1.0 1 0 0 1 1 1 1 MlaA lipoprotein Methyltransf_11 PF08241.12 EME68122.1 - 2.4e-23 82.6 0.0 4.9e-23 81.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 EME68122.1 - 1.2e-19 70.8 0.0 2.6e-19 69.7 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 EME68122.1 - 2.8e-19 69.4 0.0 5.1e-19 68.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain HTH_5 PF01022.20 EME68122.1 - 2e-15 56.4 0.5 4.1e-15 55.4 0.5 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Methyltransf_23 PF13489.6 EME68122.1 - 5e-14 52.5 0.0 7.9e-14 51.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 EME68122.1 - 1.6e-13 51.2 0.0 4.3e-13 49.8 0.0 1.7 2 0 0 2 2 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 EME68122.1 - 2.5e-11 43.4 0.0 3.4e-11 42.9 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family HTH_20 PF12840.7 EME68122.1 - 6.2e-09 35.8 0.8 6.2e-09 35.8 0.8 2.2 3 0 0 3 3 2 1 Helix-turn-helix domain MarR_2 PF12802.7 EME68122.1 - 1.5e-08 34.4 2.5 2.1e-08 33.9 0.3 2.4 3 0 0 3 3 3 1 MarR family Methyltransf_2 PF00891.18 EME68122.1 - 3e-06 26.7 0.0 4.1e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase domain HTH_24 PF13412.6 EME68122.1 - 3.8e-06 26.4 0.1 7.6e-06 25.4 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MTS PF05175.14 EME68122.1 - 1.7e-05 24.4 0.1 3e-05 23.6 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase small domain TrmB PF01978.19 EME68122.1 - 0.00019 21.2 0.0 0.00054 19.8 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB PCMT PF01135.19 EME68122.1 - 0.0004 20.2 0.0 0.00061 19.6 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_8 PF05148.15 EME68122.1 - 0.0013 18.6 0.0 0.0021 17.9 0.0 1.3 1 0 0 1 1 1 1 Hypothetical methyltransferase NodS PF05401.11 EME68122.1 - 0.0014 18.3 0.0 0.0027 17.4 0.0 1.4 1 0 0 1 1 1 1 Nodulation protein S (NodS) MarR PF01047.22 EME68122.1 - 0.0014 18.5 0.1 0.0026 17.6 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 EME68122.1 - 0.0039 17.7 0.0 0.0093 16.4 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_23 PF13384.6 EME68122.1 - 0.0067 16.2 2.0 0.032 14.0 0.0 2.9 3 0 0 3 3 3 1 Homeodomain-like domain UPF0020 PF01170.18 EME68122.1 - 0.009 15.7 0.0 0.015 15.0 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 HTH_29 PF13551.6 EME68122.1 - 0.016 15.3 0.1 0.13 12.3 0.0 2.5 2 0 0 2 2 2 0 Winged helix-turn helix DREV PF05219.12 EME68122.1 - 0.018 14.2 0.0 0.028 13.5 0.0 1.3 1 0 0 1 1 1 0 DREV methyltransferase HTH_IclR PF09339.10 EME68122.1 - 0.02 14.7 0.6 0.02 14.7 0.6 3.1 3 0 0 3 3 3 0 IclR helix-turn-helix domain HTH_37 PF13744.6 EME68122.1 - 0.036 14.0 0.2 0.58 10.2 0.1 2.9 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_Crp_2 PF13545.6 EME68122.1 - 0.057 13.4 3.2 0.18 11.8 0.1 2.6 3 0 0 3 3 3 0 Crp-like helix-turn-helix domain MTHFR PF02219.17 EME68123.1 - 5.2e-93 311.5 0.0 6.2e-93 311.2 0.0 1.0 1 0 0 1 1 1 1 Methylenetetrahydrofolate reductase DUF559 PF04480.12 EME68124.1 - 2.5e-38 130.3 0.1 2.9e-38 130.1 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF559) MTES_1575 PF18741.1 EME68124.1 - 6.9e-10 39.0 0.0 8.9e-10 38.6 0.0 1.2 1 0 0 1 1 1 1 REase_MTES_1575 S-methyl_trans PF02574.16 EME68125.1 - 4.4e-53 180.8 0.0 2.3e-52 178.5 0.0 2.0 2 0 0 2 2 2 1 Homocysteine S-methyltransferase Met_synt_B12 PF02965.17 EME68125.1 - 1.8e-46 158.8 0.0 2.6e-46 158.3 0.0 1.2 1 0 0 1 1 1 1 Vitamin B12 dependent methionine synthase, activation domain Pterin_bind PF00809.22 EME68125.1 - 2.4e-41 142.0 0.1 4.3e-41 141.2 0.1 1.4 1 0 0 1 1 1 1 Pterin binding enzyme B12-binding_2 PF02607.17 EME68125.1 - 5.7e-25 87.6 0.0 2.3e-24 85.6 0.0 2.2 1 0 0 1 1 1 1 B12 binding domain B12-binding PF02310.19 EME68125.1 - 1.9e-20 73.1 0.4 5.9e-20 71.5 0.4 1.9 1 0 0 1 1 1 1 B12 binding domain CdhD PF03599.16 EME68125.1 - 0.053 12.2 0.1 0.1 11.3 0.1 1.4 1 0 0 1 1 1 0 CO dehydrogenase/acetyl-CoA synthase delta subunit PhdYeFM_antitox PF02604.19 EME68126.1 - 1.4e-16 60.1 0.3 1.6e-16 59.8 0.3 1.2 1 0 0 1 1 1 1 Antitoxin Phd_YefM, type II toxin-antitoxin system PIN PF01850.21 EME68127.1 - 7.5e-10 39.4 2.4 8.4e-10 39.2 2.4 1.0 1 0 0 1 1 1 1 PIN domain UPF0160 PF03690.13 EME68128.1 - 1.7e-74 251.3 0.0 1.9e-74 251.1 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0160) DUF2786 PF10979.8 EME68129.1 - 3.9e-08 33.1 3.4 3.9e-08 33.1 3.4 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF2786) Histone_HNS PF00816.21 EME68129.1 - 0.067 14.0 0.7 0.13 13.1 0.1 1.7 2 0 0 2 2 2 0 H-NS histone family PDDEXK_1 PF12705.7 EME68130.1 - 2e-24 86.9 0.0 8.6e-24 84.8 0.0 2.0 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily PhdYeFM_antitox PF02604.19 EME68131.1 - 1.2e-14 53.8 0.0 1.6e-14 53.4 0.0 1.3 1 1 0 1 1 1 1 Antitoxin Phd_YefM, type II toxin-antitoxin system PHD_like PF12910.7 EME68131.1 - 0.15 12.1 0.0 0.18 11.8 0.0 1.1 1 0 0 1 1 1 0 Antitoxin of toxin-antitoxin, RelE / RelB, TA system PIN PF01850.21 EME68132.1 - 7.5e-16 58.8 0.1 9.7e-16 58.4 0.1 1.1 1 0 0 1 1 1 1 PIN domain DUF4411 PF14367.6 EME68132.1 - 0.0028 17.6 0.0 0.0044 16.9 0.0 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4411) PIN_3 PF13470.6 EME68132.1 - 0.057 14.2 0.5 0.077 13.8 0.5 1.1 1 0 0 1 1 1 0 PIN domain DUF5615 PF18480.1 EME68132.1 - 0.099 12.4 0.0 0.38 10.5 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF5615) Cadherin_5 PF17892.1 EME68133.1 - 1e-79 262.7 39.0 4e-28 97.3 3.5 4.7 4 0 0 4 4 4 4 Cadherin-like domain Big_9 PF17963.1 EME68133.1 - 3.3e-71 236.1 70.1 2.3e-26 92.3 8.7 6.7 7 0 0 7 7 7 4 Bacterial Ig domain Cadherin_4 PF17803.1 EME68133.1 - 2.9e-35 120.7 71.5 2.3e-18 66.6 6.8 6.6 8 1 0 8 8 8 4 Bacterial cadherin-like domain HCBP_related PF06594.11 EME68133.1 - 2.8e-08 33.6 0.3 1.2e-07 31.6 0.3 2.2 1 0 0 1 1 1 1 Haemolysin-type calcium binding protein related domain Cadherin_3 PF16184.5 EME68133.1 - 7.1e-07 29.2 0.5 0.0067 16.4 0.1 2.9 2 0 0 2 2 2 2 Cadherin-like HemolysinCabind PF00353.19 EME68133.1 - 2.3e-05 24.3 27.8 0.001 19.0 17.7 3.3 2 0 0 2 2 2 2 RTX calcium-binding nonapeptide repeat (4 copies) CopC PF04234.12 EME68133.1 - 0.00027 21.9 11.9 5.7 8.1 0.1 7.0 4 3 2 8 8 8 1 CopC domain HU-CCDC81_bac_2 PF18175.1 EME68133.1 - 0.16 11.8 0.1 6.5 6.7 0.0 3.1 3 0 0 3 3 3 0 CCDC81-like prokaryotic HU domain 2 Pentapeptide_3 PF13576.6 EME68133.1 - 0.57 10.4 3.1 23 5.3 0.2 2.8 2 0 0 2 2 2 0 Pentapeptide repeats (9 copies) SIR2_2 PF13289.6 EME68135.1 - 2.3e-07 31.0 0.0 5.2e-07 29.9 0.0 1.7 1 0 0 1 1 1 1 SIR2-like domain SIR2 PF02146.17 EME68135.1 - 0.00059 19.8 0.0 0.0014 18.6 0.0 1.6 2 0 0 2 2 2 1 Sir2 family HAD PF12710.7 EME68135.1 - 0.019 15.4 0.0 0.17 12.3 0.0 2.5 2 1 0 2 2 2 0 haloacid dehalogenase-like hydrolase Lon_2 PF13337.6 EME68136.1 - 7.4e-208 690.7 0.0 8.7e-208 690.4 0.0 1.0 1 0 0 1 1 1 1 Putative ATP-dependent Lon protease Lon_C PF05362.13 EME68136.1 - 9.5e-13 48.2 0.0 1.6e-12 47.4 0.0 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain ChlI PF13541.6 EME68136.1 - 0.00016 21.5 0.4 0.00045 20.1 0.0 2.0 2 0 0 2 2 2 1 Subunit ChlI of Mg-chelatase IstB_IS21 PF01695.17 EME68136.1 - 0.18 11.5 0.0 0.36 10.5 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein PglZ PF08665.12 EME68137.1 - 2.9e-65 219.7 0.0 7e-65 218.4 0.0 1.7 2 0 0 2 2 2 1 PglZ domain Phosphodiest PF01663.22 EME68137.1 - 0.00045 19.9 0.3 0.0033 17.1 0.0 2.3 2 1 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.18 EME68137.1 - 0.041 13.3 0.1 0.091 12.1 0.1 1.6 1 0 0 1 1 1 0 Metalloenzyme superfamily DUF3376 PF11856.8 EME68138.1 - 0.033 13.2 3.9 0.02 13.9 1.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3376) KAP_NTPase PF07693.14 EME68138.1 - 0.081 12.1 0.0 0.25 10.5 0.0 2.0 2 1 0 2 2 2 0 KAP family P-loop domain Cohesin_HEAT PF12765.7 EME68138.1 - 0.11 12.8 0.3 0.62 10.4 0.1 2.4 2 0 0 2 2 2 0 HEAT repeat associated with sister chromatid cohesion DUF1788 PF08747.11 EME68139.1 - 4.2e-40 136.6 0.0 5.4e-40 136.2 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1788) DUF812 PF05667.11 EME68139.1 - 0.12 11.2 0.0 0.14 11.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF812) DUF1819 PF08849.11 EME68140.1 - 2.1e-50 171.1 0.0 2.4e-50 170.9 0.0 1.0 1 0 0 1 1 1 1 Putative inner membrane protein (DUF1819) N6_N4_Mtase PF01555.18 EME68142.1 - 1.3e-39 136.3 0.0 1.9e-39 135.7 0.0 1.2 1 0 0 1 1 1 1 DNA methylase Methyltransf_31 PF13847.6 EME68142.1 - 6.2e-05 22.8 0.0 0.0015 18.3 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain UPF0020 PF01170.18 EME68142.1 - 0.00061 19.5 0.0 0.052 13.2 0.0 2.2 2 0 0 2 2 2 2 Putative RNA methylase family UPF0020 UreE_C PF05194.12 EME68142.1 - 0.059 13.9 0.1 1.8 9.1 0.0 2.4 2 0 0 2 2 2 0 UreE urease accessory protein, C-terminal domain Methyltransf_25 PF13649.6 EME68142.1 - 0.1 13.3 0.0 0.43 11.3 0.0 2.0 3 0 0 3 3 3 0 Methyltransferase domain Glyoxalase_4 PF13669.6 EME68143.1 - 2.7e-16 59.8 0.0 7e-16 58.5 0.0 1.6 1 1 1 2 2 2 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase PF00903.25 EME68143.1 - 2.9e-10 40.4 0.0 4.2e-10 39.9 0.0 1.2 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.6 EME68143.1 - 0.00012 22.2 0.3 0.0011 19.1 0.3 2.0 1 1 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_6 PF18029.1 EME68143.1 - 0.00044 21.0 0.0 0.00069 20.4 0.0 1.4 1 1 0 1 1 1 1 Glyoxalase-like domain E1_dh PF00676.20 EME68144.1 - 8.4e-62 208.8 0.0 1.3e-56 191.8 0.0 2.1 2 0 0 2 2 2 2 Dehydrogenase E1 component Transket_pyr PF02779.24 EME68144.1 - 8.6e-35 120.0 0.0 2.1e-34 118.8 0.0 1.7 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 EME68144.1 - 3.3e-17 62.5 0.1 5.6e-17 61.8 0.1 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_C PF02775.21 EME68144.1 - 0.00018 21.3 0.1 0.0011 18.8 0.1 2.2 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.6 EME68144.1 - 0.016 14.4 0.0 0.029 13.6 0.0 1.3 1 0 0 1 1 1 0 1-deoxy-D-xylulose-5-phosphate synthase cobW PF02492.19 EME68145.1 - 9.4e-43 145.8 0.1 1.3e-42 145.4 0.1 1.2 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CobW_C PF07683.14 EME68145.1 - 3.8e-15 55.6 0.0 7.9e-15 54.6 0.0 1.5 1 0 0 1 1 1 1 Cobalamin synthesis protein cobW C-terminal domain RsgA_GTPase PF03193.16 EME68145.1 - 0.0033 17.4 0.0 0.51 10.2 0.1 2.2 2 0 0 2 2 2 1 RsgA GTPase AAA_16 PF13191.6 EME68145.1 - 0.018 15.5 0.0 0.077 13.4 0.0 2.0 2 1 0 2 2 2 0 AAA ATPase domain AAA_22 PF13401.6 EME68145.1 - 0.028 14.7 0.0 0.21 11.8 0.0 2.3 2 1 0 2 2 2 0 AAA domain TsaE PF02367.17 EME68145.1 - 0.03 14.3 0.1 0.068 13.2 0.1 1.6 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE SRP54 PF00448.22 EME68145.1 - 0.059 13.0 0.8 7.5 6.1 0.7 2.2 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_18 PF13238.6 EME68145.1 - 0.067 13.7 0.4 0.16 12.5 0.1 1.8 2 0 0 2 2 1 0 AAA domain AAA_33 PF13671.6 EME68145.1 - 0.088 13.0 0.3 0.18 11.9 0.3 1.5 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 EME68145.1 - 0.096 12.4 0.6 0.18 11.6 0.3 1.7 1 1 0 1 1 1 0 P-loop containing region of AAA domain SRPRB PF09439.10 EME68145.1 - 0.1 12.0 0.1 0.3 10.5 0.1 1.7 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit AAA_28 PF13521.6 EME68145.1 - 0.12 12.6 0.0 0.25 11.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain MobB PF03205.14 EME68145.1 - 0.12 12.3 0.4 0.49 10.3 0.2 2.0 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_23 PF13476.6 EME68145.1 - 0.14 12.6 0.1 0.23 11.9 0.1 1.2 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 EME68145.1 - 0.16 12.1 0.2 0.35 11.0 0.2 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase Aldedh PF00171.22 EME68146.1 - 7.4e-171 568.7 0.9 8.3e-171 568.5 0.9 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family DUF1487 PF07368.11 EME68146.1 - 0.23 10.9 0.0 1.1 8.7 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1487) Peptidase_M24 PF00557.24 EME68147.1 - 1.3e-33 116.5 0.0 2.6e-33 115.5 0.1 1.5 2 0 0 2 2 2 1 Metallopeptidase family M24 Creatinase_N PF01321.18 EME68147.1 - 1.2e-06 29.2 0.0 2.7e-06 28.1 0.0 1.6 1 1 0 1 1 1 1 Creatinase/Prolidase N-terminal domain Usp PF00582.26 EME68148.1 - 1.5e-09 38.5 0.5 0.0047 17.4 0.0 3.1 2 2 0 2 2 2 2 Universal stress protein family ABC_tran PF00005.27 EME68149.1 - 2.3e-29 102.7 0.0 3.1e-29 102.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 EME68149.1 - 1e-07 32.1 0.8 0.0079 16.0 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 EME68149.1 - 0.00038 20.8 0.4 0.0025 18.1 0.4 2.0 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 EME68149.1 - 0.00059 19.8 0.1 0.00096 19.1 0.1 1.2 1 0 0 1 1 1 1 RsgA GTPase MMR_HSR1 PF01926.23 EME68149.1 - 0.0036 17.4 0.1 0.0073 16.4 0.1 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase AAA_29 PF13555.6 EME68149.1 - 0.0061 16.3 0.1 0.013 15.2 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain NB-ARC PF00931.22 EME68149.1 - 0.02 14.1 0.0 0.047 12.9 0.1 1.5 2 0 0 2 2 2 0 NB-ARC domain NACHT PF05729.12 EME68149.1 - 0.027 14.4 0.2 0.076 12.9 0.2 1.8 1 0 0 1 1 1 0 NACHT domain DUF87 PF01935.17 EME68149.1 - 0.073 13.2 0.3 0.13 12.3 0.3 1.3 1 0 0 1 1 1 0 Helicase HerA, central domain SMC_N PF02463.19 EME68149.1 - 0.12 11.7 0.0 0.49 9.8 0.0 1.8 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 EME68149.1 - 0.16 12.5 0.1 0.27 11.7 0.1 1.3 1 0 0 1 1 1 0 AAA domain Roc PF08477.13 EME68149.1 - 0.23 11.7 0.0 0.38 11.0 0.0 1.3 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase AAA_10 PF12846.7 EME68149.1 - 0.23 10.4 0.1 0.36 9.7 0.1 1.2 1 0 0 1 1 1 0 AAA-like domain Septin PF00735.18 EME68149.1 - 0.23 10.7 0.1 0.35 10.1 0.1 1.2 1 0 0 1 1 1 0 Septin ABC_tran PF00005.27 EME68150.1 - 4.2e-28 98.6 0.0 6.1e-28 98.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.8 EME68150.1 - 1.6e-07 31.1 0.0 2.7e-07 30.3 0.0 1.4 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_21 PF13304.6 EME68150.1 - 8.4e-06 25.8 4.7 0.04 13.7 0.4 2.5 2 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 EME68150.1 - 0.0084 16.6 0.0 0.013 16.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 EME68150.1 - 0.0096 16.3 0.2 0.026 14.9 0.2 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 EME68150.1 - 0.011 15.5 0.0 0.025 14.3 0.0 1.7 1 1 0 1 1 1 0 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 EME68150.1 - 0.017 15.0 0.1 0.03 14.2 0.1 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_33 PF13671.6 EME68150.1 - 0.035 14.3 0.1 0.078 13.1 0.1 1.7 2 1 0 2 2 2 0 AAA domain AAA_30 PF13604.6 EME68150.1 - 0.037 13.7 0.0 0.056 13.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain SMC_N PF02463.19 EME68150.1 - 0.041 13.3 0.2 0.16 11.4 0.2 1.9 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain MMR_HSR1 PF01926.23 EME68150.1 - 0.062 13.4 0.3 0.083 13.0 0.3 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_22 PF13401.6 EME68150.1 - 0.085 13.1 0.1 0.68 10.2 0.1 2.2 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 EME68150.1 - 0.1 12.3 0.1 0.25 11.0 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 EME68150.1 - 0.11 12.7 0.0 0.17 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 EME68150.1 - 0.11 12.9 0.0 0.73 10.2 0.0 2.0 1 1 0 1 1 1 0 RNA helicase AAA PF00004.29 EME68150.1 - 0.12 12.8 0.3 1 9.8 0.3 2.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SRP54 PF00448.22 EME68150.1 - 0.14 11.7 0.1 0.4 10.3 0.0 1.7 1 1 1 2 2 2 0 SRP54-type protein, GTPase domain ATP_bind_1 PF03029.17 EME68150.1 - 0.15 11.8 0.0 0.27 11.0 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein BPD_transp_2 PF02653.16 EME68151.1 - 4.5e-39 134.2 26.9 5.9e-39 133.9 26.9 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 EME68152.1 - 2.8e-39 134.9 39.7 3.3e-39 134.7 39.7 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Pam17 PF08566.10 EME68152.1 - 9.8 6.0 10.3 4.6 7.1 1.8 2.6 2 2 0 2 2 2 0 Mitochondrial import protein Pam17 Cupin_2 PF07883.11 EME68153.1 - 4.5e-05 23.1 0.0 5.6e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 EME68153.1 - 8.5e-05 22.5 0.0 0.00011 22.1 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain AraC_binding_2 PF14525.6 EME68153.1 - 0.034 13.9 0.0 0.039 13.6 0.0 1.2 1 0 0 1 1 1 0 AraC-binding-like domain Cupin_2 PF07883.11 EME68154.1 - 2.1e-12 46.6 0.4 3.8e-12 45.7 0.4 1.4 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 EME68154.1 - 1.6e-07 31.3 0.1 2e-07 31.0 0.1 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_6 PF12852.7 EME68154.1 - 0.00022 21.0 0.0 0.00076 19.2 0.0 1.8 1 1 1 2 2 2 1 Cupin DMSP_lyase PF16867.5 EME68154.1 - 0.00028 20.6 0.1 0.0009 18.9 0.1 1.7 2 0 0 2 2 2 1 Dimethlysulfonioproprionate lyase Ectoine_synth PF06339.12 EME68154.1 - 0.00044 20.4 0.0 0.00082 19.6 0.0 1.4 1 1 0 1 1 1 1 Ectoine synthase Cupin_1 PF00190.22 EME68154.1 - 0.0034 17.0 0.0 0.0047 16.5 0.0 1.4 1 0 0 1 1 1 1 Cupin Cupin_7 PF12973.7 EME68154.1 - 0.02 14.8 0.1 0.026 14.4 0.1 1.3 1 0 0 1 1 1 0 ChrR Cupin-like domain AraC_binding_2 PF14525.6 EME68154.1 - 0.022 14.4 0.0 0.027 14.1 0.0 1.2 1 0 0 1 1 1 0 AraC-binding-like domain cNMP_binding PF00027.29 EME68154.1 - 0.046 13.8 0.0 0.17 12.0 0.0 1.8 2 0 0 2 2 2 0 Cyclic nucleotide-binding domain MannoseP_isomer PF01050.18 EME68154.1 - 0.096 12.6 0.0 0.13 12.1 0.0 1.2 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase NAD_binding_2 PF03446.15 EME68155.1 - 1e-34 120.0 0.1 1.6e-34 119.4 0.1 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.6 EME68155.1 - 6.3e-22 78.1 0.0 1.7e-21 76.7 0.0 1.6 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Shikimate_DH PF01488.20 EME68155.1 - 1.6e-08 34.7 0.0 3.9e-08 33.4 0.0 1.6 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.17 EME68155.1 - 6.3e-07 29.9 0.6 4.1e-06 27.3 0.0 2.3 2 1 1 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 EME68155.1 - 1.7e-06 27.5 0.0 2.7e-06 26.8 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ApbA PF02558.16 EME68155.1 - 1.9e-05 24.4 0.1 3.8e-05 23.4 0.0 1.6 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.18 EME68155.1 - 0.00019 21.4 0.1 0.00031 20.7 0.1 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 EME68155.1 - 0.00025 21.3 0.0 0.0012 19.0 0.0 2.1 1 1 1 2 2 2 1 Saccharopine dehydrogenase NADP binding domain Fer4_11 PF13247.6 EME68156.1 - 5.4e-16 58.5 0.1 5.4e-16 58.5 0.1 1.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain CarboxypepD_reg PF13620.6 EME68156.1 - 3.3e-10 40.1 0.3 6.2e-10 39.2 0.3 1.4 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain Fer4 PF00037.27 EME68156.1 - 0.00053 19.7 3.5 1.4 8.9 0.7 3.6 3 0 0 3 3 3 2 4Fe-4S binding domain SdrD_B PF17210.3 EME68156.1 - 0.00085 19.5 0.0 0.0015 18.7 0.0 1.3 1 0 0 1 1 1 1 SdrD B-like domain CarbopepD_reg_2 PF13715.6 EME68156.1 - 0.0081 16.1 0.0 0.013 15.4 0.0 1.3 1 0 0 1 1 1 1 CarboxypepD_reg-like domain Fer4_19 PF06902.11 EME68156.1 - 0.027 14.6 0.5 0.068 13.3 0.5 1.7 1 0 0 1 1 1 0 Divergent 4Fe-4S mono-cluster Fer4_7 PF12838.7 EME68156.1 - 0.042 14.4 6.6 10 6.8 0.3 3.6 3 1 0 3 3 3 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 EME68156.1 - 0.07 13.3 6.6 0.32 11.2 0.7 3.1 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 EME68156.1 - 4.9 7.8 9.1 10 6.8 0.1 3.1 3 1 0 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Molybdopterin PF00384.22 EME68157.1 - 4.5e-46 157.7 0.0 7.3e-46 157.0 0.0 1.4 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 EME68157.1 - 9.1e-17 61.1 0.0 2.6e-16 59.6 0.0 1.8 1 1 0 1 1 1 1 Molydopterin dinucleotide binding domain LysR_substrate PF03466.20 EME68158.1 - 7.8e-39 133.2 0.3 9.6e-39 132.9 0.3 1.1 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 EME68158.1 - 1.2e-19 70.0 0.4 4.3e-19 68.2 0.4 2.0 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family MarR_2 PF12802.7 EME68158.1 - 0.0031 17.4 0.1 0.0072 16.2 0.1 1.7 1 0 0 1 1 1 1 MarR family HTH_28 PF13518.6 EME68158.1 - 0.021 15.0 0.0 0.042 14.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.6 EME68158.1 - 0.026 14.5 0.0 0.053 13.5 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn helix Fe_dep_repress PF01325.19 EME68158.1 - 0.042 14.0 0.2 0.1 12.8 0.2 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_24 PF13412.6 EME68158.1 - 0.054 13.1 0.4 0.12 11.9 0.4 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_30 PF13556.6 EME68158.1 - 0.1 12.4 0.0 0.24 11.2 0.0 1.6 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain MCPsignal PF00015.21 EME68159.1 - 2.7e-31 108.7 21.2 2.7e-31 108.7 21.2 3.0 1 1 1 2 2 2 1 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 EME68159.1 - 2.3e-11 43.9 0.5 2.3e-11 43.9 0.5 4.3 5 1 0 5 5 5 1 HAMP domain DUF948 PF06103.11 EME68159.1 - 0.003 17.8 15.4 0.33 11.2 1.1 4.9 2 1 3 5 5 5 3 Bacterial protein of unknown function (DUF948) DUF1664 PF07889.12 EME68159.1 - 0.022 14.8 2.5 7.5 6.6 0.1 3.5 2 2 0 3 3 3 0 Protein of unknown function (DUF1664) Phasin_2 PF09361.10 EME68159.1 - 0.022 15.0 5.8 0.022 15.0 5.8 3.6 2 2 1 3 3 3 0 Phasin protein HTH_AsnC-type PF13404.6 EME68159.1 - 0.22 11.4 2.1 1 9.2 0.4 3.2 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain Laminin_II PF06009.12 EME68159.1 - 0.4 10.7 7.6 4.2 7.4 0.8 3.3 1 1 0 2 2 2 0 Laminin Domain II Serine_rich PF08824.10 EME68159.1 - 0.47 10.4 3.9 1 9.3 0.7 2.9 2 1 1 3 3 3 0 Serine rich protein interaction domain Casc1_N PF15927.5 EME68159.1 - 0.59 9.8 2.9 1.9 8.1 2.8 1.7 2 0 0 2 2 2 0 Cancer susceptibility candidate 1 N-terminus DUF2203 PF09969.9 EME68159.1 - 0.9 10.3 6.2 6.2 7.6 0.1 3.3 2 1 1 4 4 4 0 Uncharacterized conserved protein (DUF2203) Peptidase_M41 PF01434.18 EME68160.1 - 2.1e-68 229.9 0.2 3.2e-68 229.4 0.2 1.3 1 0 0 1 1 1 1 Peptidase family M41 AAA PF00004.29 EME68160.1 - 1.2e-46 158.4 0.0 1.6e-45 154.7 0.0 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 EME68160.1 - 4.1e-13 48.9 0.1 8.1e-13 48.0 0.1 1.5 1 0 0 1 1 1 1 AAA+ lid domain FtsH_ext PF06480.15 EME68160.1 - 2.3e-09 37.5 0.0 8.1e-09 35.8 0.0 1.9 2 0 0 2 2 2 1 FtsH Extracellular AAA_5 PF07728.14 EME68160.1 - 5e-07 29.8 0.1 8.4e-06 25.8 0.0 2.8 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 EME68160.1 - 2.7e-05 24.6 0.0 9.4e-05 22.9 0.0 2.1 1 1 0 1 1 1 1 AAA ATPase domain TIP49 PF06068.13 EME68160.1 - 5.7e-05 22.5 0.0 0.00016 21.0 0.0 1.7 1 0 0 1 1 1 1 TIP49 P-loop domain RuvB_N PF05496.12 EME68160.1 - 0.00045 20.0 0.0 0.0021 17.8 0.0 2.2 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 EME68160.1 - 0.00077 19.8 0.1 0.028 14.7 0.0 2.9 2 1 0 2 2 2 1 AAA domain IstB_IS21 PF01695.17 EME68160.1 - 0.0044 16.8 0.0 0.0087 15.8 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_2 PF07724.14 EME68160.1 - 0.0058 16.8 0.0 0.016 15.3 0.0 1.7 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_33 PF13671.6 EME68160.1 - 0.02 15.1 0.0 0.045 13.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 EME68160.1 - 0.028 13.8 0.1 0.059 12.7 0.1 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_28 PF13521.6 EME68160.1 - 0.081 13.2 0.0 0.31 11.3 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 EME68160.1 - 0.11 13.0 0.0 0.51 10.9 0.0 2.1 2 0 0 2 2 1 0 AAA domain AAA_17 PF13207.6 EME68160.1 - 0.13 12.7 0.0 0.29 11.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 EME68160.1 - 0.18 11.1 0.2 0.73 9.1 0.1 1.9 1 1 1 2 2 2 0 Zeta toxin AAA_7 PF12775.7 EME68160.1 - 0.18 11.3 0.1 0.54 9.7 0.1 1.7 1 1 0 1 1 1 0 P-loop containing dynein motor region ABC_tran PF00005.27 EME68160.1 - 0.19 12.2 0.1 0.52 10.8 0.1 1.7 1 0 0 1 1 1 0 ABC transporter NACHT PF05729.12 EME68160.1 - 0.2 11.6 0.2 0.74 9.7 0.0 2.0 2 0 0 2 2 2 0 NACHT domain ATP_bind_3 PF01171.20 EME68161.1 - 3e-51 173.8 0.0 3.9e-51 173.4 0.0 1.1 1 0 0 1 1 1 1 PP-loop family TPR_16 PF13432.6 EME68162.1 - 2.1e-10 41.0 6.3 1.4e-09 38.5 3.4 3.6 2 1 2 4 4 4 3 Tetratricopeptide repeat TPR_6 PF13174.6 EME68162.1 - 7.8e-07 29.3 9.9 0.28 11.9 0.2 4.4 3 1 0 3 3 3 3 Tetratricopeptide repeat YfiO PF13525.6 EME68162.1 - 9.5e-07 28.7 2.7 1.5e-06 28.1 2.7 1.3 1 0 0 1 1 1 1 Outer membrane lipoprotein TolA_bind_tri PF16331.5 EME68162.1 - 0.00037 20.5 4.1 0.003 17.6 3.5 2.2 1 1 1 2 2 2 1 TolA binding protein trimerisation TPR_2 PF07719.17 EME68162.1 - 0.00038 20.3 8.5 0.18 12.0 2.0 3.7 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_14 PF13428.6 EME68162.1 - 0.0014 19.2 1.3 3.4 8.7 0.2 3.9 1 1 2 3 3 3 1 Tetratricopeptide repeat SlyX PF04102.12 EME68162.1 - 0.0048 17.5 0.4 0.0048 17.5 0.4 2.6 3 0 0 3 3 2 1 SlyX TPR_9 PF13371.6 EME68162.1 - 0.0062 16.7 0.6 0.021 15.0 0.6 1.9 1 0 0 1 1 1 1 Tetratricopeptide repeat CLZ PF16526.5 EME68162.1 - 0.0077 16.6 2.4 6.1 7.3 0.0 3.0 2 1 0 2 2 2 2 C-terminal leucine zipper domain of cyclic nucleotide-gated channels KLRAQ PF10205.9 EME68162.1 - 0.012 15.9 0.7 0.033 14.4 0.1 2.0 3 0 0 3 3 2 0 Predicted coiled-coil domain-containing protein TPR_18 PF13512.6 EME68162.1 - 0.046 13.8 1.2 0.081 13.0 1.2 1.4 1 0 0 1 1 1 0 Tetratricopeptide repeat CENP-F_leu_zip PF10473.9 EME68162.1 - 0.11 12.5 1.5 9.1 6.3 0.0 2.3 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 TPR_17 PF13431.6 EME68162.1 - 0.56 10.7 4.3 1.4 9.5 1.1 2.9 3 0 0 3 3 2 0 Tetratricopeptide repeat TPR_3 PF07720.12 EME68162.1 - 0.73 9.9 9.1 1.1 9.3 3.4 3.0 2 1 0 2 2 2 0 Tetratricopeptide repeat TPR_8 PF13181.6 EME68162.1 - 0.74 10.2 4.3 28 5.2 0.3 3.4 3 0 0 3 3 3 0 Tetratricopeptide repeat DMPK_coil PF08826.10 EME68162.1 - 0.79 9.9 5.4 0.18 11.9 1.3 1.9 2 0 0 2 2 2 0 DMPK coiled coil domain like TPR_20 PF14561.6 EME68162.1 - 0.88 9.9 6.0 0.2 12.0 2.0 2.1 2 0 0 2 2 2 0 Tetratricopeptide repeat Sugarporin_N PF11471.8 EME68162.1 - 3.2 7.8 12.7 0.9 9.5 1.0 3.2 3 0 0 3 3 3 0 Maltoporin periplasmic N-terminal extension ABC_tran_CTD PF16326.5 EME68162.1 - 6.7 7.0 7.9 24 5.3 1.5 2.7 3 0 0 3 3 2 0 ABC transporter C-terminal domain OmpA PF00691.20 EME68163.1 - 1.5e-24 86.2 0.2 2e-24 85.8 0.2 1.2 1 0 0 1 1 1 1 OmpA family Pilus_CpaD PF09476.10 EME68163.1 - 0.0093 15.7 0.8 0.021 14.6 0.8 1.5 1 1 0 1 1 1 1 Pilus biogenesis CpaD protein (pilus_cpaD) TolB_N PF04052.13 EME68164.1 - 4.8e-36 123.1 0.0 7.7e-36 122.5 0.0 1.3 1 0 0 1 1 1 1 TolB amino-terminal domain PD40 PF07676.12 EME68164.1 - 6.4e-29 99.3 10.2 1.9e-11 43.5 0.1 6.2 6 0 0 6 6 6 4 WD40-like Beta Propeller Repeat Pectate_lyase22 PF14583.6 EME68164.1 - 1.1e-05 24.3 0.0 0.77 8.4 0.0 3.3 1 1 2 3 3 3 3 Oligogalacturonate lyase DUF5050 PF16472.5 EME68164.1 - 6.5e-05 22.3 0.0 0.002 17.4 0.0 2.5 1 1 1 3 3 3 1 Domain of unknown function (DUF5050) DPPIV_N PF00930.21 EME68164.1 - 0.00098 18.0 0.0 0.56 8.9 0.0 3.5 2 1 1 4 4 4 3 Dipeptidyl peptidase IV (DPP IV) N-terminal region Gmad1 PF10647.9 EME68164.1 - 0.054 13.2 0.0 0.29 10.9 0.0 2.1 2 1 1 3 3 3 0 Lipoprotein LpqB beta-propeller domain TonB_2 PF13103.6 EME68165.1 - 1.3e-05 25.4 0.2 1.3e-05 25.4 0.2 3.8 4 2 0 4 4 4 1 TonB C terminal ExbD PF02472.16 EME68166.1 - 1.4e-32 112.6 0.1 1.7e-32 112.3 0.1 1.0 1 0 0 1 1 1 1 Biopolymer transport protein ExbD/TolR DDE_Tnp_1_4 PF13701.6 EME68166.1 - 0.28 9.4 0.0 0.32 9.2 0.0 1.1 1 0 0 1 1 1 0 Transposase DDE domain group 1 MotA_ExbB PF01618.16 EME68167.1 - 1.6e-39 134.6 0.2 2.2e-39 134.1 0.2 1.2 1 0 0 1 1 1 1 MotA/TolQ/ExbB proton channel family DUF5305 PF17231.2 EME68167.1 - 0.13 11.7 0.0 0.23 10.8 0.0 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5305) 4HBT PF03061.22 EME68168.1 - 8.9e-18 64.4 0.1 1.4e-17 63.8 0.1 1.3 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_2 PF13279.6 EME68168.1 - 1.9e-12 47.7 0.0 2.5e-12 47.4 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily Acyl-ACP_TE PF01643.17 EME68168.1 - 0.0042 16.4 0.0 0.0048 16.2 0.0 1.1 1 0 0 1 1 1 1 Acyl-ACP thioesterase RuvB_N PF05496.12 EME68169.1 - 1.7e-79 265.1 0.0 2.4e-79 264.6 0.0 1.2 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_lid_4 PF17864.1 EME68169.1 - 8.7e-30 102.3 0.3 1.7e-29 101.3 0.3 1.5 1 0 0 1 1 1 1 RuvB AAA lid domain RuvB_C PF05491.13 EME68169.1 - 8.5e-28 96.0 0.0 1.4e-27 95.3 0.0 1.4 1 0 0 1 1 1 1 RuvB C-terminal winged helix domain AAA PF00004.29 EME68169.1 - 2.6e-18 66.7 0.0 4.4e-18 66.0 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 EME68169.1 - 5.6e-07 29.6 0.2 0.00023 21.2 0.2 2.4 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 EME68169.1 - 1.3e-05 25.6 0.5 0.00072 20.0 0.0 2.5 1 1 1 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 EME68169.1 - 0.00015 22.0 0.3 0.068 13.4 0.0 2.5 1 1 1 2 2 2 1 AAA domain AAA_3 PF07726.11 EME68169.1 - 0.00018 21.4 0.0 0.024 14.5 0.0 2.4 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) TIP49 PF06068.13 EME68169.1 - 0.0002 20.7 0.1 0.0025 17.1 0.0 2.0 2 0 0 2 2 2 1 TIP49 P-loop domain Mg_chelatase PF01078.21 EME68169.1 - 0.00023 20.6 0.1 0.042 13.2 0.0 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_33 PF13671.6 EME68169.1 - 0.00023 21.3 0.0 0.00074 19.7 0.0 1.8 2 0 0 2 2 2 1 AAA domain Sigma54_activat PF00158.26 EME68169.1 - 0.0019 17.9 0.0 1.6 8.4 0.0 2.3 1 1 1 2 2 2 2 Sigma-54 interaction domain TsaE PF02367.17 EME68169.1 - 0.003 17.5 0.0 0.0052 16.8 0.0 1.3 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE NB-ARC PF00931.22 EME68169.1 - 0.0048 16.1 0.0 0.044 13.0 0.0 2.1 2 0 0 2 2 2 1 NB-ARC domain Rad17 PF03215.15 EME68169.1 - 0.0097 15.9 0.0 0.016 15.1 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain NACHT PF05729.12 EME68169.1 - 0.014 15.3 0.0 0.037 13.9 0.0 1.7 2 0 0 2 2 1 0 NACHT domain AAA_18 PF13238.6 EME68169.1 - 0.014 16.0 0.0 0.031 14.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain ResIII PF04851.15 EME68169.1 - 0.016 15.2 0.0 6.8 6.7 0.0 2.1 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit NTPase_1 PF03266.15 EME68169.1 - 0.017 15.0 0.1 0.18 11.7 0.0 2.2 1 1 1 2 2 2 0 NTPase AAA_14 PF13173.6 EME68169.1 - 0.032 14.3 0.0 0.09 12.8 0.0 1.7 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 EME68169.1 - 0.05 14.0 0.0 0.078 13.4 0.0 1.3 1 0 0 1 1 1 0 RNA helicase Cytidylate_kin PF02224.18 EME68169.1 - 0.11 12.2 0.0 0.19 11.5 0.0 1.3 1 0 0 1 1 1 0 Cytidylate kinase AAA_17 PF13207.6 EME68169.1 - 0.13 12.7 0.0 0.23 11.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain Bac_DnaA PF00308.18 EME68169.1 - 0.19 11.5 0.0 1.3 8.8 0.0 2.0 2 0 0 2 2 2 0 Bacterial dnaA protein RuvA_N PF01330.21 EME68170.1 - 1.4e-20 73.2 0.0 7.4e-20 70.8 0.0 2.1 2 1 0 2 2 2 1 RuvA N terminal domain RuvA_C PF07499.13 EME68170.1 - 6.2e-14 52.2 1.6 8.8e-14 51.7 0.3 2.0 2 0 0 2 2 2 1 RuvA, C-terminal domain HHH_5 PF14520.6 EME68170.1 - 2.2e-12 47.4 1.0 4.8e-12 46.3 0.5 1.9 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH PF00633.23 EME68170.1 - 0.017 15.0 3.2 7.2 6.7 0.3 3.5 2 1 1 3 3 3 0 Helix-hairpin-helix motif RuvC PF02075.17 EME68171.1 - 3.1e-39 134.2 0.1 3.6e-39 134.0 0.1 1.0 1 0 0 1 1 1 1 Crossover junction endodeoxyribonuclease RuvC DUF1930 PF09122.10 EME68171.1 - 0.75 9.8 3.7 1.1 9.3 0.2 2.5 2 1 1 3 3 3 0 Domain of unknown function (DUF1930) Transcrip_reg PF01709.20 EME68172.1 - 8.3e-91 303.7 0.0 9.4e-91 303.5 0.0 1.0 1 0 0 1 1 1 1 Transcriptional regulator MCPsignal PF00015.21 EME68173.1 - 9.8e-24 84.1 33.4 4.8e-23 81.8 21.4 2.7 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain PilZ PF07238.14 EME68173.1 - 0.00013 22.2 0.0 0.00027 21.2 0.0 1.6 1 0 0 1 1 1 1 PilZ domain STN1_2 PF09170.10 EME68173.1 - 0.05 13.8 0.0 0.1 12.8 0.0 1.5 1 0 0 1 1 1 0 CST, Suppressor of cdc thirteen homolog, complex subunit STN1 Laminin_I PF06008.14 EME68173.1 - 1.2 8.8 11.0 1.1 8.9 0.4 3.3 3 1 1 4 4 4 0 Laminin Domain I DUF948 PF06103.11 EME68173.1 - 1.6 9.0 13.1 8.2 6.8 0.1 3.7 2 2 1 3 3 3 0 Bacterial protein of unknown function (DUF948) Thioredoxin PF00085.20 EME68174.1 - 1.2e-11 44.5 0.0 1.4e-11 44.3 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_7 PF13899.6 EME68174.1 - 2.9e-07 30.5 0.1 5.2e-07 29.8 0.1 1.4 1 1 0 1 1 1 1 Thioredoxin-like Thioredoxin_2 PF13098.6 EME68174.1 - 2.2e-05 24.9 0.0 0.00013 22.4 0.0 1.9 1 1 0 1 1 1 1 Thioredoxin-like domain Redoxin PF08534.10 EME68174.1 - 5.7e-05 22.9 0.1 6.8e-05 22.6 0.1 1.1 1 0 0 1 1 1 1 Redoxin Thioredox_DsbH PF03190.15 EME68174.1 - 0.00035 20.6 0.1 0.00048 20.1 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_9 PF14595.6 EME68174.1 - 0.0015 18.3 0.0 0.0016 18.2 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin AhpC-TSA PF00578.21 EME68174.1 - 0.053 13.4 0.0 0.091 12.7 0.0 1.5 1 1 0 1 1 1 0 AhpC/TSA family Thioredoxin_8 PF13905.6 EME68174.1 - 0.066 13.5 0.0 0.091 13.1 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin-like MlaC PF05494.12 EME68175.1 - 5.3e-11 42.6 0.0 5.7e-11 42.5 0.0 1.0 1 0 0 1 1 1 1 MlaC protein YmdB PF13277.6 EME68176.1 - 1.5e-96 322.6 0.0 1.7e-96 322.5 0.0 1.0 1 0 0 1 1 1 1 YmdB-like protein Metallophos PF00149.28 EME68176.1 - 0.00059 20.4 0.1 0.0015 19.1 0.1 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase PGA_cap PF09587.10 EME68176.1 - 0.0061 16.0 0.1 1 8.8 0.1 2.2 2 0 0 2 2 2 2 Bacterial capsule synthesis protein PGA_cap 5-FTHF_cyc-lig PF01812.20 EME68177.1 - 1.9e-32 112.7 0.0 2.2e-32 112.5 0.0 1.0 1 0 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family ZapA PF05164.13 EME68178.1 - 1.6e-20 73.3 0.1 1.9e-20 73.1 0.1 1.1 1 0 0 1 1 1 1 Cell division protein ZapA DUF4164 PF13747.6 EME68179.1 - 1.5e-08 34.8 4.3 0.00019 21.7 0.8 2.0 1 1 1 2 2 2 2 Domain of unknown function (DUF4164) HalX PF08663.10 EME68179.1 - 0.34 11.3 5.9 0.14 12.5 2.0 1.9 2 0 0 2 2 2 0 HalX domain DUF3124 PF11322.8 EME68180.1 - 4.1e-45 153.0 0.0 4.8e-45 152.7 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3124) SecE PF00584.20 EME68182.1 - 3.3e-20 71.8 5.9 3.7e-20 71.6 5.9 1.0 1 0 0 1 1 1 1 SecE/Sec61-gamma subunits of protein translocation complex NusG PF02357.19 EME68183.1 - 1.2e-28 99.5 0.6 2e-28 98.8 0.3 1.5 2 0 0 2 2 2 1 Transcription termination factor nusG KOW PF00467.29 EME68183.1 - 5.5e-06 26.2 0.7 1.9e-05 24.4 0.1 2.2 2 0 0 2 2 2 1 KOW motif PolyG_pol PF01518.16 EME68183.1 - 0.081 11.6 0.0 0.13 10.9 0.0 1.2 1 0 0 1 1 1 0 Sigma NS protein Ribosomal_L11_N PF03946.14 EME68184.1 - 6.8e-33 112.3 0.2 1.2e-32 111.6 0.2 1.4 1 0 0 1 1 1 1 Ribosomal protein L11, N-terminal domain Ribosomal_L11 PF00298.19 EME68184.1 - 1.6e-26 92.6 1.2 2.8e-26 91.8 1.2 1.4 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain DUF3140 PF11338.8 EME68184.1 - 0.024 15.1 0.0 0.067 13.6 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3140) Ribosomal_L1 PF00687.21 EME68185.1 - 1.9e-58 197.6 0.0 2.4e-58 197.3 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family Ribosomal_L10 PF00466.20 EME68186.1 - 5.1e-23 81.1 0.0 7.4e-23 80.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L10 Ribosomal_L12 PF00542.19 EME68187.1 - 6.2e-31 106.6 11.1 6.2e-31 106.6 11.1 2.0 2 1 0 2 2 2 1 Ribosomal protein L7/L12 C-terminal domain Ribosomal_L12_N PF16320.5 EME68187.1 - 1.2e-19 69.7 14.5 5.5e-18 64.4 11.8 2.5 2 0 0 2 2 2 2 Ribosomal protein L7/L12 dimerisation domain Ribosomal_60s PF00428.19 EME68187.1 - 0.043 14.4 13.8 0.12 13.0 5.8 2.5 2 1 0 2 2 2 0 60s Acidic ribosomal protein DUF520 PF04461.13 EME68187.1 - 0.14 12.2 2.5 0.24 11.5 2.5 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF520) RNA_pol_Rpb2_6 PF00562.28 EME68188.1 - 4e-168 559.5 0.6 3.2e-167 556.5 0.1 2.4 3 0 0 3 3 3 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_1 PF04563.15 EME68188.1 - 3.6e-33 114.8 0.0 9.1e-33 113.5 0.0 1.7 1 1 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_3 PF04565.16 EME68188.1 - 8.7e-33 112.3 0.0 1.8e-32 111.3 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_7 PF04560.20 EME68188.1 - 3.5e-27 94.6 0.0 9.2e-27 93.3 0.0 1.8 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_2 PF04561.14 EME68188.1 - 1.6e-26 93.1 0.0 2e-20 73.2 0.0 2.5 2 1 0 2 2 2 2 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_45 PF10385.9 EME68188.1 - 5.2e-25 87.5 0.1 2.9e-24 85.1 0.1 2.4 2 0 0 2 2 2 1 RNA polymerase beta subunit external 1 domain 5-nucleotidase PF06189.12 EME68188.1 - 0.098 11.6 0.1 0.37 9.7 0.0 1.8 2 0 0 2 2 2 0 5'-nucleotidase RNA_pol_Rpb1_1 PF04997.12 EME68189.1 - 1.1e-90 304.1 0.0 1.9e-90 303.4 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_5 PF04998.17 EME68189.1 - 1.9e-74 250.5 0.1 3.9e-74 249.4 0.1 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 RNA_pol_Rpb1_2 PF00623.20 EME68189.1 - 1.1e-37 129.8 0.0 4.5e-27 95.3 0.0 2.8 1 1 1 2 2 2 2 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.18 EME68189.1 - 1.6e-23 83.3 0.4 4.2e-22 78.8 0.4 2.7 1 1 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_4 PF05000.17 EME68189.1 - 1.5e-17 63.5 0.5 3.4e-17 62.4 0.5 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 Biotin_lipoyl_2 PF13533.6 EME68189.1 - 6.6e-06 25.9 0.0 0.3 10.9 0.0 4.0 4 0 0 4 4 4 2 Biotin-lipoyl like Peptidase_M23 PF01551.22 EME68189.1 - 1.4e-05 25.2 0.1 0.091 13.0 0.0 4.3 4 1 0 4 4 4 1 Peptidase family M23 Apocytochr_F_C PF01333.19 EME68189.1 - 2.6e-05 24.2 0.0 0.27 11.3 0.0 2.8 2 0 0 2 2 2 2 Apocytochrome F, C-terminal PTS_EIIA_1 PF00358.20 EME68189.1 - 0.0019 18.0 0.0 33 4.2 0.0 5.0 4 0 0 4 4 4 0 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 Lin0512_fam PF09585.10 EME68189.1 - 0.079 13.0 0.0 0.32 11.1 0.0 2.1 1 0 0 1 1 1 0 Conserved hypothetical protein (Lin0512_fam) ApbA_C PF08546.11 EME68189.1 - 0.11 12.6 0.0 0.51 10.6 0.0 2.1 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA C terminal Trypsin_2 PF13365.6 EME68190.1 - 1.3e-19 71.6 0.7 2.3e-19 70.7 0.7 1.4 1 0 0 1 1 1 1 Trypsin-like peptidase domain Sel1 PF08238.12 EME68190.1 - 1.3e-10 41.6 7.9 0.0023 18.6 0.8 3.7 3 0 0 3 3 3 3 Sel1 repeat Trypsin PF00089.26 EME68190.1 - 0.015 15.2 0.3 0.15 11.8 0.3 2.1 1 1 0 1 1 1 0 Trypsin DUF2880 PF11082.8 EME68190.1 - 0.32 11.4 2.8 0.62 10.4 1.9 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2880) SLT PF01464.20 EME68191.1 - 5.3e-07 29.3 0.1 2e-05 24.2 0.0 2.8 3 0 0 3 3 3 1 Transglycosylase SLT domain Phage_lysozyme2 PF18013.1 EME68191.1 - 0.0035 17.4 0.0 0.0056 16.7 0.0 1.4 1 0 0 1 1 1 1 Phage tail lysozyme Phage_lysozyme PF00959.19 EME68191.1 - 0.066 13.7 0.0 0.15 12.5 0.0 1.6 1 0 0 1 1 1 0 Phage lysozyme Ribosom_S12_S23 PF00164.25 EME68192.1 - 8.3e-44 147.9 0.9 9.5e-44 147.7 0.9 1.0 1 0 0 1 1 1 1 Ribosomal protein S12/S23 Ribosomal_S7 PF00177.21 EME68193.1 - 7.7e-69 230.1 1.7 8.6e-69 229.9 1.7 1.0 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e Nup153 PF08604.10 EME68193.1 - 0.13 11.0 0.1 0.16 10.8 0.1 1.1 1 0 0 1 1 1 0 Nucleoporin Nup153-like GTP_EFTU PF00009.27 EME68194.1 - 1.7e-69 233.3 0.0 2.5e-69 232.7 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 EME68194.1 - 2e-44 150.2 0.2 4.1e-44 149.2 0.2 1.6 1 0 0 1 1 1 1 Elongation factor G, domain IV EFG_II PF14492.6 EME68194.1 - 1.3e-33 114.9 0.1 2.5e-33 114.0 0.1 1.5 1 0 0 1 1 1 1 Elongation Factor G, domain II EFG_C PF00679.24 EME68194.1 - 1.8e-32 111.2 0.0 6.3e-32 109.5 0.0 2.0 1 0 0 1 1 1 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.25 EME68194.1 - 1.8e-16 60.3 1.2 5.2e-16 58.8 0.2 2.4 3 0 0 3 3 3 1 Elongation factor Tu domain 2 RF3_C PF16658.5 EME68194.1 - 7e-05 22.7 0.1 0.00015 21.6 0.1 1.5 1 0 0 1 1 1 1 Class II release factor RF3, C-terminal domain MMR_HSR1 PF01926.23 EME68194.1 - 0.001 19.2 0.0 0.0021 18.1 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase AIG1 PF04548.16 EME68194.1 - 0.032 13.6 0.0 0.059 12.7 0.0 1.4 1 0 0 1 1 1 0 AIG1 family ANP PF00212.18 EME68194.1 - 0.1 12.8 0.0 0.21 11.8 0.0 1.5 1 0 0 1 1 1 0 Atrial natriuretic peptide GTP_EFTU PF00009.27 EME68195.1 - 3.7e-56 189.7 0.0 4.3e-56 189.6 0.0 1.0 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain MMR_HSR1 PF01926.23 EME68195.1 - 1.2e-05 25.3 0.0 2.3e-05 24.4 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase cobW PF02492.19 EME68195.1 - 0.018 14.7 0.0 0.036 13.6 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain RsgA_GTPase PF03193.16 EME68195.1 - 0.082 12.8 0.0 0.33 10.8 0.0 1.7 1 1 1 2 2 2 0 RsgA GTPase MBOAT PF03062.19 EME68197.1 - 4.3e-33 115.1 3.4 4.3e-33 115.1 3.4 1.6 1 1 1 2 2 2 1 MBOAT, membrane-bound O-acyltransferase family MBOAT_2 PF13813.6 EME68197.1 - 8.3e-07 29.2 1.2 3e-06 27.4 1.2 2.0 1 1 0 1 1 1 1 Membrane bound O-acyl transferase family NAD_kinase PF01513.21 EME68198.1 - 6.2e-19 68.3 0.0 9.6e-19 67.7 0.0 1.3 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 EME68198.1 - 0.04 13.5 0.0 0.07 12.7 0.0 1.5 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain AbrB PF05145.12 EME68199.1 - 1.3e-79 267.4 45.5 1.7e-79 267.1 45.5 1.1 1 0 0 1 1 1 1 Transition state regulatory protein AbrB DUF485 PF04341.12 EME68199.1 - 0.53 10.3 4.8 0.17 11.9 0.4 2.5 3 0 0 3 3 3 0 Protein of unknown function, DUF485 Cupin_2 PF07883.11 EME68200.1 - 8.6e-05 22.2 0.0 0.00022 20.8 0.0 1.7 1 1 0 1 1 1 1 Cupin domain DUF992 PF06186.11 EME68201.1 - 8.6e-30 103.5 5.3 1e-29 103.2 5.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF992) Mur_ligase_M PF08245.12 EME68202.1 - 8.6e-18 65.0 0.0 1.3e-17 64.5 0.0 1.2 1 0 0 1 1 1 1 Mur ligase middle domain Mur_ligase PF01225.25 EME68202.1 - 9.1e-12 45.2 0.1 3e-10 40.3 0.0 2.7 2 0 0 2 2 2 1 Mur ligase family, catalytic domain Mur_ligase_C PF02875.21 EME68202.1 - 1.6e-10 41.1 0.0 8.4e-10 38.8 0.0 2.2 2 0 0 2 2 2 1 Mur ligase family, glutamate ligase domain Peptidase_S66 PF02016.15 EME68203.1 - 4.7e-21 75.1 0.0 6.3e-21 74.7 0.0 1.2 1 0 0 1 1 1 1 LD-carboxypeptidase N-terminal domain Peptidase_S66C PF17676.1 EME68203.1 - 5.4e-17 62.5 0.0 8.5e-17 61.8 0.0 1.2 1 0 0 1 1 1 1 LD-carboxypeptidase C-terminal domain SKI PF01202.22 EME68204.1 - 2.5e-28 99.2 0.0 4.3e-28 98.4 0.0 1.4 1 0 0 1 1 1 1 Shikimate kinase HTH_31 PF13560.6 EME68204.1 - 8.6e-10 38.8 0.3 2.3e-09 37.5 0.3 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 EME68204.1 - 4.6e-08 33.0 0.0 1.6e-07 31.2 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.7 EME68204.1 - 1.1e-06 28.6 0.0 3e-06 27.2 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain AAA_18 PF13238.6 EME68204.1 - 7e-05 23.4 1.1 0.00048 20.7 0.1 2.5 2 1 0 2 2 2 1 AAA domain HTH_26 PF13443.6 EME68204.1 - 0.00014 22.3 0.1 0.00036 20.9 0.0 1.8 2 0 0 2 2 1 1 Cro/C1-type HTH DNA-binding domain AAA_33 PF13671.6 EME68204.1 - 0.00017 21.8 0.0 0.00042 20.5 0.0 1.7 1 1 0 1 1 1 1 AAA domain Cytidylate_kin2 PF13189.6 EME68204.1 - 0.00044 20.4 0.4 0.019 15.1 0.0 2.9 2 1 0 2 2 2 1 Cytidylate kinase-like family AAA PF00004.29 EME68204.1 - 0.00061 20.2 0.1 0.0013 19.2 0.1 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.27 EME68204.1 - 0.006 17.1 0.2 0.015 15.8 0.1 1.5 1 1 0 1 1 1 1 ABC transporter HTH_25 PF13413.6 EME68204.1 - 0.0066 16.3 0.1 0.026 14.4 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain DUF815 PF05673.13 EME68204.1 - 0.0085 15.3 0.3 0.066 12.4 0.2 2.3 2 1 0 2 2 2 1 Protein of unknown function (DUF815) TsaE PF02367.17 EME68204.1 - 0.012 15.6 0.0 0.022 14.7 0.0 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_17 PF13207.6 EME68204.1 - 0.016 15.6 0.1 0.093 13.2 0.1 2.2 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 EME68204.1 - 0.045 14.0 0.1 0.091 13.0 0.1 1.6 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 EME68204.1 - 0.056 13.7 0.1 0.16 12.2 0.1 1.9 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 EME68204.1 - 0.11 12.9 0.3 0.17 12.3 0.2 1.7 1 1 0 1 1 1 0 AAA ATPase domain Cytidylate_kin PF02224.18 EME68204.1 - 0.14 11.8 0.2 0.71 9.6 0.2 2.1 1 1 0 1 1 1 0 Cytidylate kinase Complex1_51K PF01512.17 EME68205.1 - 2.7e-44 150.7 0.0 4.6e-44 149.9 0.0 1.4 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit NADH_4Fe-4S PF10589.9 EME68205.1 - 3e-21 75.3 0.0 5.9e-21 74.3 0.0 1.5 1 0 0 1 1 1 1 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 2Fe-2S_thioredx PF01257.19 EME68205.1 - 2.4e-14 53.4 0.0 9.3e-10 38.5 0.0 2.2 2 0 0 2 2 2 2 Thioredoxin-like [2Fe-2S] ferredoxin SLBB PF10531.9 EME68205.1 - 1.2e-08 34.7 0.6 9.4e-08 31.8 0.2 2.4 2 0 0 2 2 2 1 SLBB domain Molybdopterin PF00384.22 EME68206.1 - 3.3e-86 289.9 0.0 4e-86 289.7 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 EME68206.1 - 5.5e-27 94.0 0.0 1.4e-26 92.7 0.0 1.7 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Fer2_4 PF13510.6 EME68206.1 - 6.1e-16 58.2 0.8 2.1e-15 56.5 0.3 2.3 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Molybdop_Fe4S4 PF04879.16 EME68206.1 - 5.8e-14 51.8 0.5 1.7e-13 50.3 0.5 1.9 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Fer4_21 PF14697.6 EME68206.1 - 1.7e-07 31.2 5.5 1.7e-07 31.2 5.5 2.4 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 EME68206.1 - 1e-06 28.7 25.2 3e-06 27.2 9.7 2.4 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 EME68206.1 - 1e-06 29.1 5.8 1e-06 29.1 5.8 2.4 4 0 0 4 4 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 EME68206.1 - 1.2e-06 29.0 8.4 1.2e-06 29.0 8.4 3.1 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.27 EME68206.1 - 1.7e-06 27.6 3.6 1.7e-06 27.6 3.6 3.5 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_6 PF12837.7 EME68206.1 - 2.5e-06 27.3 18.6 7.8e-05 22.6 3.5 3.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.6 EME68206.1 - 2.6e-06 27.5 8.4 2.6e-06 27.5 8.4 3.0 2 1 1 4 4 4 2 4Fe-4S dicluster domain Fer2 PF00111.27 EME68206.1 - 1.8e-05 24.6 0.2 4.6e-05 23.3 0.2 1.7 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_17 PF13534.6 EME68206.1 - 9.3e-05 22.9 7.9 9.3e-05 22.9 7.9 2.4 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 EME68206.1 - 0.0061 16.6 3.8 0.0061 16.6 3.8 4.0 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_16 PF13484.6 EME68206.1 - 0.0078 17.1 3.5 0.0078 17.1 3.5 2.7 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_3 PF12798.7 EME68206.1 - 0.013 16.4 7.9 0.013 16.4 7.9 4.0 4 0 0 4 4 3 0 4Fe-4S binding domain Fer4_22 PF17179.4 EME68206.1 - 0.026 15.4 2.8 0.026 15.4 2.8 2.5 1 1 1 2 2 2 0 4Fe-4S dicluster domain CDC48_N PF02359.18 EME68206.1 - 0.026 14.7 0.0 0.11 12.7 0.0 2.0 2 0 0 2 2 2 0 Cell division protein 48 (CDC48), N-terminal domain Fer4_18 PF13746.6 EME68206.1 - 0.058 13.6 10.1 0.14 12.4 1.2 2.5 1 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 EME68206.1 - 0.069 13.7 20.4 0.035 14.6 4.6 3.6 3 0 0 3 3 3 0 4Fe-4S binding domain TrwB_AAD_bind PF10412.9 EME68206.1 - 0.075 11.9 0.0 0.11 11.3 0.0 1.1 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain Fer4_15 PF13459.6 EME68206.1 - 0.1 13.4 7.6 2 9.2 0.5 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.6 EME68206.1 - 1.9 9.1 11.8 6.1 7.5 0.9 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I DUF4863 PF16155.5 EME68207.1 - 1.6e-52 177.4 0.0 1.8e-52 177.2 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4863) Abhydrolase_6 PF12697.7 EME68208.1 - 2.1e-13 51.4 4.7 3.6e-13 50.6 4.7 1.4 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 EME68208.1 - 1.8e-08 34.0 0.1 0.00044 19.6 0.1 2.1 2 0 0 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 EME68208.1 - 1.9e-08 34.3 0.2 6.3e-07 29.3 0.2 2.1 1 1 1 2 2 2 1 alpha/beta hydrolase fold Thioesterase PF00975.20 EME68208.1 - 0.027 14.6 0.1 0.052 13.7 0.1 1.4 1 0 0 1 1 1 0 Thioesterase domain LIDHydrolase PF10230.9 EME68208.1 - 0.19 11.2 0.0 2.6 7.5 0.0 2.0 2 0 0 2 2 2 0 Lipid-droplet associated hydrolase Aldedh PF00171.22 EME68209.1 - 4.7e-60 203.4 0.0 5.6e-60 203.2 0.0 1.1 1 0 0 1 1 1 1 Aldehyde dehydrogenase family ECH_1 PF00378.20 EME68210.1 - 5e-19 68.6 0.1 9.5e-19 67.7 0.1 1.3 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 EME68210.1 - 2.4e-08 33.8 0.1 3.9e-08 33.2 0.1 1.2 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase PaaA_PaaC PF05138.12 EME68211.1 - 0.0081 15.4 0.0 0.018 14.2 0.0 1.6 1 0 0 1 1 1 1 Phenylacetic acid catabolic protein FinO_N PF12602.8 EME68212.1 - 0.045 14.1 0.0 0.054 13.8 0.0 1.2 1 0 0 1 1 1 0 Fertility inhibition protein N terminal SNF2_N PF00176.23 EME68213.1 - 1.7e-35 122.4 0.0 3e-35 121.6 0.0 1.3 1 0 0 1 1 1 1 SNF2 family N-terminal domain Mrr_cat PF04471.12 EME68213.1 - 1.6e-17 63.6 0.0 3.3e-17 62.6 0.0 1.5 1 0 0 1 1 1 1 Restriction endonuclease Helicase_C PF00271.31 EME68213.1 - 6.1e-13 49.1 0.0 1.2e-12 48.2 0.0 1.4 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 EME68213.1 - 0.00034 20.7 0.0 0.0017 18.4 0.0 2.1 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Mrr_cat_2 PF13156.6 EME68213.1 - 0.03 14.2 0.0 0.079 12.9 0.0 1.7 1 0 0 1 1 1 0 Restriction endonuclease EH_Signature PF15611.6 EME68214.1 - 5.2e-42 144.7 8.5 7.1e-42 144.3 8.5 1.1 1 0 0 1 1 1 1 EH_Signature domain MMS19_N PF14500.6 EME68214.1 - 0.16 11.5 0.0 0.28 10.7 0.0 1.3 1 0 0 1 1 1 0 Dos2-interacting transcription regulator of RNA-Pol-II OmpA PF00691.20 EME68215.1 - 3.2e-12 46.7 0.6 8e-12 45.4 0.1 2.0 2 1 0 2 2 2 1 OmpA family MotB_plug PF13677.6 EME68215.1 - 0.0017 17.9 1.6 0.0038 16.8 1.6 1.6 1 0 0 1 1 1 1 Membrane MotB of proton-channel complex MotA/MotB TssO PF17561.2 EME68215.1 - 0.019 15.1 1.5 0.042 13.9 1.5 1.5 1 0 0 1 1 1 0 Type VI secretion system, TssO MIT_C PF16565.5 EME68215.1 - 0.086 12.8 0.1 0.35 10.8 0.1 1.8 2 0 0 2 2 2 0 Phospholipase D-like domain at C-terminus of MIT EIF_2_alpha PF07541.12 EME68215.1 - 0.097 12.8 0.2 0.4 10.8 0.1 1.9 2 1 0 2 2 2 0 Eukaryotic translation initiation factor 2 alpha subunit DHHC PF01529.20 EME68215.1 - 0.11 12.6 0.1 0.17 12.0 0.1 1.2 1 0 0 1 1 1 0 DHHC palmitoyltransferase Apolipoprotein PF01442.18 EME68216.1 - 8.1e-16 58.4 38.8 1.4e-05 25.0 3.7 5.2 1 1 4 5 5 5 5 Apolipoprotein A1/A4/E domain Baculo_PEP_C PF04513.12 EME68216.1 - 1.4e-07 31.6 27.3 0.12 12.5 0.0 6.9 2 2 4 6 6 6 3 Baculovirus polyhedron envelope protein, PEP, C terminus ApoLp-III PF07464.11 EME68216.1 - 3.5e-06 27.2 31.7 0.065 13.3 8.9 6.0 2 2 4 6 6 6 3 Apolipophorin-III precursor (apoLp-III) DUF1664 PF07889.12 EME68216.1 - 0.00019 21.4 26.0 0.16 12.0 0.6 7.4 1 1 7 8 8 8 2 Protein of unknown function (DUF1664) Fib_alpha PF08702.10 EME68216.1 - 0.0002 21.5 12.4 2.9 8.1 1.5 5.3 2 1 3 5 5 5 2 Fibrinogen alpha/beta chain family Prominin PF05478.11 EME68216.1 - 0.00024 19.3 14.5 0.22 9.4 1.9 3.9 1 1 2 4 4 4 4 Prominin AAA_13 PF13166.6 EME68216.1 - 0.001 17.8 17.1 0.0056 15.4 2.1 3.1 2 1 1 3 3 3 2 AAA domain SF-assemblin PF06705.11 EME68216.1 - 0.0047 16.3 15.9 0.71 9.2 2.5 4.2 2 2 3 5 5 5 2 SF-assemblin/beta giardin Phasin PF05597.11 EME68216.1 - 0.0056 16.7 1.1 0.0056 16.7 1.1 6.8 2 2 5 8 8 7 1 Poly(hydroxyalcanoate) granule associated protein (phasin) GIT1_C PF12205.8 EME68216.1 - 0.0071 16.5 14.2 0.012 15.7 0.0 4.9 3 2 2 5 5 4 1 G protein-coupled receptor kinase-interacting protein 1 C term NPV_P10 PF05531.12 EME68216.1 - 0.0085 16.5 16.7 15 6.1 0.0 7.8 5 3 2 7 7 6 0 Nucleopolyhedrovirus P10 protein DUF948 PF06103.11 EME68216.1 - 0.011 16.0 39.6 0.59 10.4 0.8 9.4 4 2 3 8 8 7 0 Bacterial protein of unknown function (DUF948) DUF4455 PF14643.6 EME68216.1 - 0.021 13.5 9.0 0.49 9.0 1.1 3.3 2 1 0 3 3 3 0 Domain of unknown function (DUF4455) EzrA PF06160.12 EME68216.1 - 0.03 12.5 6.7 1.5 6.9 0.5 4.0 1 1 4 5 5 5 0 Septation ring formation regulator, EzrA BLOC1_2 PF10046.9 EME68216.1 - 0.034 14.5 16.7 8.1 6.8 1.5 7.0 5 2 2 7 7 7 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Spore_III_AB PF09548.10 EME68216.1 - 0.042 13.9 8.3 4.6 7.3 0.1 4.5 3 2 0 3 3 3 0 Stage III sporulation protein AB (spore_III_AB) Catalase-rel PF06628.12 EME68216.1 - 0.074 13.3 0.1 0.88 9.8 0.0 2.9 3 0 0 3 3 1 0 Catalase-related immune-responsive DUF3510 PF12022.8 EME68216.1 - 0.094 13.1 3.1 1.5 9.2 0.5 3.4 3 0 0 3 3 3 0 Domain of unknown function (DUF3510) Exonuc_VII_L PF02601.15 EME68216.1 - 0.1 12.2 25.1 9.5 5.7 0.5 3.9 1 1 1 2 2 1 0 Exonuclease VII, large subunit DUF3584 PF12128.8 EME68216.1 - 0.24 8.8 25.7 0.078 10.5 5.1 2.8 1 1 1 2 2 2 0 Protein of unknown function (DUF3584) YlqD PF11068.8 EME68216.1 - 0.59 10.5 16.2 1.2 9.5 0.0 4.1 3 2 1 4 4 4 0 YlqD protein COG5 PF10392.9 EME68216.1 - 0.68 10.1 13.3 18 5.5 0.3 6.0 5 2 3 8 8 8 0 Golgi transport complex subunit 5 DUF4795 PF16043.5 EME68216.1 - 1.2 8.7 17.0 1.6 8.3 2.5 4.5 2 2 0 3 3 3 0 Domain of unknown function (DUF4795) DUF4776 PF16003.5 EME68216.1 - 1.3 7.9 2.8 13 4.6 0.6 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4776) Tropomyosin_1 PF12718.7 EME68216.1 - 1.9 8.6 13.1 0.19 11.9 0.5 4.1 2 2 1 3 3 3 0 Tropomyosin like DUF885 PF05960.11 EME68216.1 - 2 8.0 29.6 0.71 9.4 12.1 3.4 1 1 1 3 3 3 0 Bacterial protein of unknown function (DUF885) Goodbye PF17109.5 EME68216.1 - 2 8.9 8.7 37 4.8 0.1 5.1 4 2 2 6 6 4 0 fungal STAND N-terminal Goodbye domain RmuC PF02646.16 EME68216.1 - 2.2 7.4 26.8 1.6 7.8 0.6 6.8 3 2 2 6 6 6 0 RmuC family ApoO PF09769.9 EME68216.1 - 2.5 8.1 8.7 7.3 6.6 0.8 4.5 3 2 0 4 4 4 0 Apolipoprotein O Filament PF00038.21 EME68216.1 - 2.5 7.6 18.4 1.5 8.3 2.8 3.8 1 1 2 3 3 3 0 Intermediate filament protein V_ATPase_I PF01496.19 EME68216.1 - 3.2 5.6 12.8 0.37 8.6 1.2 2.4 2 1 0 2 2 2 0 V-type ATPase 116kDa subunit family DUF4446 PF14584.6 EME68216.1 - 4 7.4 12.2 2.4 8.1 0.0 5.2 4 2 1 6 6 6 0 Protein of unknown function (DUF4446) FlaF PF07309.11 EME68216.1 - 7.2 6.7 9.7 20 5.3 0.9 3.6 2 1 1 3 3 3 0 Flagellar protein FlaF FlgN PF05130.12 EME68216.1 - 9.4 6.7 29.3 1.7 9.1 1.6 6.1 2 2 3 6 6 6 0 FlgN protein ROS_MUCR PF05443.11 EME68218.1 - 5e-35 120.3 0.0 7.1e-35 119.8 0.0 1.2 1 0 0 1 1 1 1 ROS/MUCR transcriptional regulator protein PIN PF01850.21 EME68219.1 - 9.9e-13 48.7 0.1 1.2e-12 48.4 0.1 1.1 1 0 0 1 1 1 1 PIN domain GATase_6 PF13522.6 EME68219.1 - 0.018 15.3 1.2 2 8.6 0.2 2.1 1 1 1 2 2 2 0 Glutamine amidotransferase domain PhdYeFM_antitox PF02604.19 EME68220.1 - 1.8e-09 37.3 0.0 1.9e-09 37.2 0.0 1.1 1 0 0 1 1 1 1 Antitoxin Phd_YefM, type II toxin-antitoxin system Mago-bind PF09282.10 EME68220.1 - 0.081 12.8 0.1 0.21 11.5 0.0 1.7 2 0 0 2 2 2 0 Mago binding DUF1566 PF07603.11 EME68221.1 - 0.0016 18.8 0.0 0.0017 18.7 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1566) HTH_3 PF01381.22 EME68223.1 - 8.6e-10 38.5 0.0 3.6e-09 36.5 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.6 EME68223.1 - 0.00011 22.4 0.0 0.00022 21.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 EME68223.1 - 0.0011 18.9 0.0 0.0022 17.9 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain EF-G-binding_N PF07299.11 EME68223.1 - 0.19 12.2 0.0 0.3 11.6 0.0 1.3 1 0 0 1 1 1 0 Elongation factor G-binding protein, N-terminal DUF2384 PF09722.10 EME68224.1 - 5.7e-08 32.7 0.0 9.1e-08 32.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2384) T2SS-T3SS_pil_N PF13629.6 EME68224.1 - 0.18 11.5 0.9 0.29 10.9 0.2 1.7 2 0 0 2 2 2 0 Pilus formation protein N terminal region zf-dskA_traR PF01258.17 EME68225.1 - 2e-08 34.0 5.2 2e-08 34.0 5.2 1.5 2 0 0 2 2 2 1 Prokaryotic dksA/traR C4-type zinc finger Zn-ribbon_8 PF09723.10 EME68225.1 - 0.12 12.5 5.2 0.2 11.8 5.2 1.3 1 0 0 1 1 1 0 Zinc ribbon domain RNase_T PF00929.24 EME68226.1 - 2.5e-17 63.9 0.0 4.2e-17 63.2 0.0 1.4 1 1 0 1 1 1 1 Exonuclease DUF5051 PF16473.5 EME68226.1 - 1.4 8.9 6.5 2 8.3 1.0 3.2 2 2 0 2 2 2 0 3' exoribonuclease, RNase T-like DUF5132 PF17195.4 EME68227.1 - 0.024 14.7 0.3 0.032 14.3 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF5132) HD_2 PF12917.7 EME68228.1 - 2.4e-07 30.7 0.0 3.8e-07 30.1 0.0 1.3 1 0 0 1 1 1 1 HD containing hydrolase-like enzyme HD_3 PF13023.6 EME68228.1 - 0.0098 15.8 0.0 0.013 15.5 0.0 1.2 1 0 0 1 1 1 1 HD domain HD PF01966.22 EME68228.1 - 0.036 14.3 0.1 0.054 13.7 0.1 1.4 1 0 0 1 1 1 0 HD domain WYL PF13280.6 EME68230.1 - 1.8e-09 37.9 0.1 2.4e-09 37.5 0.1 1.3 1 0 0 1 1 1 1 WYL domain DOCK-C2 PF14429.6 EME68230.1 - 0.23 11.2 0.0 0.71 9.7 0.0 1.6 2 0 0 2 2 2 0 C2 domain in Dock180 and Zizimin proteins Bac_DNA_binding PF00216.21 EME68231.1 - 6.7e-33 112.8 0.1 7.4e-33 112.6 0.1 1.0 1 0 0 1 1 1 1 Bacterial DNA-binding protein HU-HIG PF18291.1 EME68231.1 - 6.9e-07 29.4 0.0 7.3e-07 29.3 0.0 1.1 1 0 0 1 1 1 1 HU domain fused to wHTH, Ig, or Glycine-rich motif DUF2267 PF10025.9 EME68231.1 - 0.0017 18.6 0.1 0.0025 18.1 0.1 1.3 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2267) HU-CCDC81_euk_2 PF18289.1 EME68231.1 - 0.12 12.5 0.1 0.18 12.0 0.1 1.2 1 0 0 1 1 1 0 CCDC81 eukaryotic HU domain 2 ROS_MUCR PF05443.11 EME68232.1 - 9.4e-43 145.2 0.0 1.2e-42 144.9 0.0 1.1 1 0 0 1 1 1 1 ROS/MUCR transcriptional regulator protein T2SS_PulS_OutS PF09691.10 EME68232.1 - 0.13 12.4 0.0 0.24 11.6 0.0 1.4 1 0 0 1 1 1 0 Type II secretion system pilotin lipoprotein (PulS_OutS) zf-C2H2 PF00096.26 EME68232.1 - 1.6 9.3 3.9 10 6.8 3.9 2.1 1 1 0 1 1 1 0 Zinc finger, C2H2 type Phage_integrase PF00589.22 EME68233.1 - 2.6e-23 82.7 0.6 1.7e-21 76.7 0.0 2.8 1 1 1 2 2 2 1 Phage integrase family Phage_int_SAM_3 PF14659.6 EME68233.1 - 0.085 13.1 0.0 0.2 12.0 0.0 1.6 1 0 0 1 1 1 0 Phage integrase, N-terminal SAM-like domain DUF4351 PF14261.6 EME68234.1 - 0.0018 18.3 59.4 12 6.0 0.1 20.1 5 3 16 22 22 22 5 Domain of unknown function (DUF4351) HTH_26 PF13443.6 EME68234.1 - 0.17 12.3 80.8 3 8.4 0.7 18.7 7 5 11 20 20 20 0 Cro/C1-type HTH DNA-binding domain Radical_SAM PF04055.21 EME68236.1 - 2.4e-12 47.5 0.0 4.1e-12 46.8 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily B12-binding PF02310.19 EME68236.1 - 0.014 15.4 0.0 0.029 14.4 0.0 1.5 1 0 0 1 1 1 0 B12 binding domain ANP PF00212.18 EME68236.1 - 0.22 11.7 1.4 0.27 11.4 0.1 1.8 2 0 0 2 2 2 0 Atrial natriuretic peptide Glyco_trans_1_4 PF13692.6 EME68237.1 - 1e-05 25.9 0.1 1.5e-05 25.4 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 EME68237.1 - 0.00035 20.1 0.0 0.0007 19.2 0.0 1.4 1 1 0 1 1 1 1 Glycosyl transferases group 1 Epimerase PF01370.21 EME68238.1 - 9.7e-37 126.7 0.0 6.6e-36 124.0 0.0 1.9 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 EME68238.1 - 8.8e-28 97.6 0.0 6.9e-27 94.7 0.0 1.9 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 EME68238.1 - 2.1e-11 43.5 0.0 4.1e-11 42.5 0.0 1.5 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 EME68238.1 - 5.3e-08 32.3 0.0 7.4e-08 31.9 0.0 1.2 1 0 0 1 1 1 1 Male sterility protein Polysacc_synt_2 PF02719.15 EME68238.1 - 4.3e-05 22.8 0.0 0.00012 21.4 0.0 1.6 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.19 EME68238.1 - 0.00014 21.0 0.0 0.00022 20.4 0.0 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family adh_short PF00106.25 EME68238.1 - 0.0015 18.0 0.0 0.0028 17.2 0.0 1.4 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 EME68238.1 - 0.0056 16.6 0.0 0.048 13.6 0.0 2.1 2 0 0 2 2 2 1 KR domain Epimerase PF01370.21 EME68239.1 - 9.9e-26 90.7 0.0 2.3e-25 89.5 0.0 1.5 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 EME68239.1 - 1.3e-19 70.8 0.0 2.5e-18 66.6 0.0 2.2 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase NAD_binding_4 PF07993.12 EME68239.1 - 1e-07 31.4 0.0 1.9e-07 30.6 0.0 1.4 1 1 0 1 1 1 1 Male sterility protein RmlD_sub_bind PF04321.17 EME68239.1 - 0.00099 18.3 0.0 0.048 12.8 0.0 2.0 2 0 0 2 2 2 2 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 EME68239.1 - 0.0084 15.3 0.0 0.19 10.9 0.0 2.0 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein DUF5070 PF16802.5 EME68240.1 - 0.042 13.8 0.3 0.043 13.8 0.3 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF5070) Methyltr_RsmB-F PF01189.17 EME68241.1 - 1.5e-49 168.4 0.0 2.1e-49 167.9 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltransf_31 PF13847.6 EME68241.1 - 1.2e-08 34.8 0.0 2e-08 34.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 EME68241.1 - 7e-08 33.1 0.3 9.6e-06 26.2 0.0 3.1 3 0 0 3 3 3 1 Methyltransferase domain Ubie_methyltran PF01209.18 EME68241.1 - 2.2e-07 30.5 0.0 2.2e-06 27.2 0.0 2.0 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family FtsJ PF01728.19 EME68241.1 - 0.00014 22.0 0.0 0.00024 21.3 0.0 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_24 PF13578.6 EME68241.1 - 0.00016 22.6 0.9 0.00066 20.7 0.1 2.3 3 0 0 3 3 2 1 Methyltransferase domain Methyltr_RsmF_N PF17125.5 EME68241.1 - 0.00057 20.3 0.0 0.001 19.5 0.0 1.5 1 0 0 1 1 1 1 N-terminal domain of 16S rRNA methyltransferase RsmF PCMT PF01135.19 EME68241.1 - 0.001 18.9 0.0 0.0017 18.2 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_11 PF08241.12 EME68241.1 - 0.0025 18.4 1.2 0.033 14.8 0.0 3.0 3 1 0 3 3 3 1 Methyltransferase domain MTS PF05175.14 EME68241.1 - 0.008 15.7 0.0 0.017 14.7 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_3 PF01596.17 EME68241.1 - 0.031 13.5 0.0 0.049 12.8 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase GCD14 PF08704.10 EME68241.1 - 0.048 13.3 0.0 0.088 12.5 0.0 1.3 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit PrmA PF06325.13 EME68241.1 - 0.072 12.5 0.0 0.14 11.5 0.0 1.4 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_32 PF13679.6 EME68241.1 - 0.097 12.6 0.0 0.15 12.0 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_15 PF09445.10 EME68241.1 - 0.13 11.8 0.0 0.19 11.3 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_12 PF08242.12 EME68241.1 - 0.14 12.9 0.1 5.3 7.9 0.0 2.8 3 0 0 3 3 3 0 Methyltransferase domain SBP_bac_3 PF00497.20 EME68242.1 - 7.5e-45 153.1 0.0 9e-45 152.8 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Phosphonate-bd PF12974.7 EME68242.1 - 0.0021 17.7 0.2 0.003 17.2 0.2 1.2 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein IMPDH PF00478.25 EME68243.1 - 7e-160 531.7 9.8 7.9e-160 531.5 9.8 1.0 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain CBS PF00571.28 EME68243.1 - 8e-20 71.1 3.1 3e-12 46.8 0.0 3.2 3 0 0 3 3 3 2 CBS domain NMO PF03060.15 EME68243.1 - 2.9e-12 46.6 9.0 1.5e-07 31.2 6.2 2.2 2 0 0 2 2 2 2 Nitronate monooxygenase FMN_dh PF01070.18 EME68243.1 - 2.1e-08 33.6 8.6 2.1e-08 33.6 8.6 2.2 2 1 1 3 3 3 1 FMN-dependent dehydrogenase Glu_synthase PF01645.17 EME68243.1 - 6.6e-07 28.8 6.4 1.2e-06 28.0 6.4 1.4 1 0 0 1 1 1 1 Conserved region in glutamate synthase His_biosynth PF00977.21 EME68243.1 - 9.3e-06 25.3 4.0 0.0044 16.5 0.4 2.7 1 1 1 2 2 2 2 Histidine biosynthesis protein IGPS PF00218.21 EME68243.1 - 5e-05 22.6 1.0 0.11 11.7 0.0 2.6 3 0 0 3 3 3 2 Indole-3-glycerol phosphate synthase Dus PF01207.17 EME68243.1 - 7.5e-05 22.0 1.1 0.021 13.9 0.1 2.3 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NanE PF04131.14 EME68243.1 - 0.002 17.4 3.9 0.0095 15.1 3.9 2.2 1 1 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase Beta_elim_lyase PF01212.21 EME68243.1 - 0.0053 16.1 0.5 0.01 15.2 0.5 1.5 1 0 0 1 1 1 1 Beta-eliminating lyase G3P_antiterm PF04309.12 EME68243.1 - 0.018 14.4 3.1 0.96 8.8 0.3 2.5 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator TMP-TENI PF02581.17 EME68243.1 - 0.062 12.6 6.6 0.088 12.1 3.8 2.5 2 1 0 2 2 2 0 Thiamine monophosphate synthase PcrB PF01884.17 EME68243.1 - 0.069 12.6 6.6 2 7.8 0.6 2.8 3 0 0 3 3 3 0 PcrB family Cys_Met_Meta_PP PF01053.20 EME68243.1 - 0.11 11.0 0.7 0.3 9.6 0.1 1.9 2 0 0 2 2 2 0 Cys/Met metabolism PLP-dependent enzyme DHO_dh PF01180.21 EME68243.1 - 0.16 11.2 8.1 0.23 10.6 2.3 2.3 1 1 1 2 2 2 0 Dihydroorotate dehydrogenase Ribul_P_3_epim PF00834.19 EME68243.1 - 0.5 9.7 5.5 0.33 10.3 2.5 2.3 2 1 1 3 3 3 0 Ribulose-phosphate 3 epimerase family FtsJ PF01728.19 EME68244.1 - 1e-56 191.9 0.0 1.2e-56 191.6 0.0 1.1 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_31 PF13847.6 EME68244.1 - 0.0016 18.3 0.0 0.28 11.0 0.0 2.1 2 0 0 2 2 2 2 Methyltransferase domain Methyltransf_23 PF13489.6 EME68244.1 - 0.12 12.3 0.0 0.24 11.2 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase domain Ppx-GppA PF02541.16 EME68245.1 - 7.3e-49 166.7 0.0 8.3e-49 166.5 0.0 1.0 1 0 0 1 1 1 1 Ppx/GppA phosphatase family Phage_integrase PF00589.22 EME68246.1 - 7.2e-07 29.2 0.0 1.8e-06 27.8 0.0 1.6 2 0 0 2 2 2 1 Phage integrase family Phage_int_SAM_3 PF14659.6 EME68246.1 - 0.00011 22.4 0.1 0.00024 21.3 0.1 1.6 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 EME68246.1 - 0.07 13.5 0.0 0.34 11.3 0.0 2.2 2 1 0 2 2 2 0 Phage integrase SAM-like domain Phage_int_SAM_4 PF13495.6 EME68246.1 - 0.096 13.2 0.3 0.45 11.0 0.6 2.0 2 0 0 2 2 2 0 Phage integrase, N-terminal SAM-like domain DNA_binding_2 PF13724.6 EME68246.1 - 0.3 11.5 2.1 1.3 9.5 0.3 2.7 2 0 0 2 2 2 0 DNA-binding domain Mtf2_C PF14061.6 EME68247.1 - 0.088 13.0 0.0 0.15 12.3 0.0 1.4 1 0 0 1 1 1 0 Polycomb-like MTF2 factor 2 OTCace PF00185.24 EME68248.1 - 0.49 10.5 5.3 9.8 6.2 0.6 2.5 1 1 1 2 2 2 0 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CCDC84 PF14968.6 EME68248.1 - 0.96 9.0 7.0 0.92 9.1 6.1 1.4 1 1 0 1 1 1 0 Coiled coil protein 84 PNKP_ligase PF16542.5 EME68248.1 - 1.3 8.5 11.0 0.21 11.1 5.7 2.2 1 1 1 3 3 3 0 PNKP adenylyltransferase domain, ligase domain Metal_resist PF13801.6 EME68248.1 - 4.5 7.5 12.8 5.8 7.1 10.5 2.2 2 0 0 2 2 2 0 Heavy-metal resistance IFT46_B_C PF12317.8 EME68248.1 - 7.9 6.1 9.9 1.9 8.2 5.3 2.1 2 1 1 3 3 3 0 Intraflagellar transport complex B protein 46 C terminal AAA_24 PF13479.6 EME68249.1 - 3.9e-10 39.8 0.3 6.6e-10 39.0 0.3 1.3 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 EME68249.1 - 2.4e-08 34.5 0.0 3.9e-08 33.8 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.6 EME68249.1 - 1.1e-06 28.6 0.0 9e-05 22.3 0.0 2.2 1 1 1 2 2 2 1 DNA polymerase III, delta subunit AAA_14 PF13173.6 EME68249.1 - 0.00031 20.8 0.1 0.00048 20.2 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 EME68249.1 - 0.00091 19.6 0.0 0.002 18.5 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 EME68249.1 - 0.0022 18.3 0.9 1.2 9.4 0.1 2.6 2 1 1 3 3 3 2 AAA domain Bac_DnaA PF00308.18 EME68249.1 - 0.0033 17.3 0.1 0.0057 16.5 0.1 1.4 1 1 0 1 1 1 1 Bacterial dnaA protein AAA_18 PF13238.6 EME68249.1 - 0.01 16.4 0.0 0.015 15.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 EME68249.1 - 0.015 15.1 0.0 0.024 14.4 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein Mg_chelatase PF01078.21 EME68249.1 - 0.024 14.0 0.0 0.061 12.7 0.0 1.6 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI TniB PF05621.11 EME68249.1 - 0.026 13.9 0.0 0.13 11.7 0.0 1.9 2 0 0 2 2 2 0 Bacterial TniB protein Rad17 PF03215.15 EME68249.1 - 0.036 14.0 0.0 0.075 12.9 0.0 1.6 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_28 PF13521.6 EME68249.1 - 0.039 14.2 0.0 0.056 13.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 EME68249.1 - 0.044 14.2 0.0 0.13 12.7 0.0 1.9 1 1 0 1 1 1 0 RNA helicase AAA_5 PF07728.14 EME68249.1 - 0.045 13.7 0.1 0.24 11.4 0.1 2.2 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_13 PF13166.6 EME68249.1 - 0.054 12.1 0.0 0.074 11.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain RuvB_N PF05496.12 EME68249.1 - 0.092 12.5 0.0 0.46 10.2 0.0 2.2 2 1 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain DUF815 PF05673.13 EME68249.1 - 0.096 11.8 0.0 0.15 11.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) TsaE PF02367.17 EME68249.1 - 0.12 12.4 0.0 0.22 11.5 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE PhoH PF02562.16 EME68249.1 - 0.15 11.5 0.1 16 4.8 0.0 2.3 2 0 0 2 2 2 0 PhoH-like protein SpoVG PF04026.12 EME68250.1 - 0.0018 18.4 0.0 0.0022 18.1 0.0 1.1 1 0 0 1 1 1 1 SpoVG RNase_T PF00929.24 EME68252.1 - 4.4e-35 121.7 0.0 7.3e-35 120.9 0.0 1.4 1 0 0 1 1 1 1 Exonuclease DNA_pol_A_exo1 PF01612.20 EME68252.1 - 3.8e-06 26.7 0.0 0.00037 20.3 0.0 2.3 2 0 0 2 2 2 1 3'-5' exonuclease PAS PF00989.25 EME68252.1 - 0.00035 20.5 0.1 0.00081 19.4 0.1 1.7 1 0 0 1 1 1 1 PAS fold DUF2384 PF09722.10 EME68252.1 - 0.00083 19.3 0.2 0.0028 17.7 0.2 1.9 1 0 0 1 1 1 1 Protein of unknown function (DUF2384) PAS_8 PF13188.7 EME68252.1 - 0.0049 16.8 0.1 0.014 15.4 0.1 1.8 1 0 0 1 1 1 1 PAS domain PAS_9 PF13426.7 EME68252.1 - 0.12 12.6 0.0 0.26 11.6 0.0 1.5 1 0 0 1 1 1 0 PAS domain PAS_4 PF08448.10 EME68252.1 - 0.12 12.6 1.6 1.3 9.3 0.1 3.2 2 1 0 2 2 2 0 PAS fold PAS_7 PF12860.7 EME68252.1 - 0.16 12.1 0.2 0.58 10.3 0.2 2.0 1 1 0 1 1 1 0 PAS fold DUF294 PF03445.13 EME68253.1 - 5e-36 123.5 0.0 8.6e-36 122.8 0.0 1.4 1 0 0 1 1 1 1 Putative nucleotidyltransferase DUF294 DUF294_C PF10335.9 EME68253.1 - 2e-27 95.8 1.5 4.4e-27 94.6 0.5 1.9 2 0 0 2 2 2 1 Putative nucleotidyltransferase substrate binding domain CBS PF00571.28 EME68253.1 - 2.6e-22 79.0 1.5 9.8e-11 41.9 0.1 2.5 2 0 0 2 2 2 2 CBS domain DUF485 PF04341.12 EME68254.1 - 7.5e-33 112.4 0.6 8.6e-33 112.2 0.6 1.0 1 0 0 1 1 1 1 Protein of unknown function, DUF485 E1-E2_ATPase PF00122.20 EME68254.1 - 0.0024 17.4 1.4 0.003 17.1 1.4 1.1 1 0 0 1 1 1 1 E1-E2 ATPase DUF5639 PF18690.1 EME68254.1 - 0.16 12.1 0.0 0.24 11.6 0.0 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5639) DUF202 PF02656.15 EME68254.1 - 1.3 9.6 5.9 1.9 9.0 5.9 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF202) SSF PF00474.17 EME68255.1 - 3.2e-110 368.8 42.0 4.9e-110 368.2 42.0 1.3 1 0 0 1 1 1 1 Sodium:solute symporter family DUF2818 PF10993.8 EME68255.1 - 0.2 12.2 0.0 0.2 12.2 0.0 4.6 5 1 1 6 6 6 0 Protein of unknown function (DUF2818) BacA PF02673.18 EME68256.1 - 7.2e-76 255.3 16.7 8.3e-76 255.1 16.7 1.0 1 0 0 1 1 1 1 Bacitracin resistance protein BacA YIEGIA PF14045.6 EME68256.1 - 0.18 10.6 1.3 0.32 9.8 0.1 1.9 2 0 0 2 2 2 0 YIEGIA protein DUF5353 PF17304.2 EME68256.1 - 0.4 10.5 7.3 0.073 12.8 1.0 2.6 2 1 0 2 2 2 0 Family of unknown function (DUF5353) PNTB_4TM PF12769.7 EME68256.1 - 3 8.4 8.8 3.2 8.3 0.5 3.0 1 1 1 2 2 2 0 4TM region of pyridine nucleotide transhydrogenase, mitoch Hemerythrin PF01814.23 EME68257.1 - 2.9e-13 50.6 3.6 3.5e-13 50.3 3.6 1.0 1 0 0 1 1 1 1 Hemerythrin HHE cation binding domain TetR_C_31 PF17940.1 EME68257.1 - 0.0043 17.2 1.4 0.0054 16.9 1.4 1.2 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain ADH_zinc_N_2 PF13602.6 EME68258.1 - 9.3e-25 88.2 0.1 1.5e-24 87.6 0.1 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N PF00107.26 EME68258.1 - 4.2e-19 68.8 0.9 6.6e-19 68.2 0.9 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 EME68258.1 - 2.4e-11 43.5 0.0 7.7e-10 38.6 0.0 2.4 1 1 1 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_N_2 PF16884.5 EME68258.1 - 0.022 14.7 0.0 0.096 12.6 0.0 2.0 2 0 0 2 2 2 0 N-terminal domain of oxidoreductase AMP-binding PF00501.28 EME68259.1 - 1.2e-80 271.2 0.0 1.5e-80 270.9 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 EME68259.1 - 3.1e-14 53.7 0.5 7.9e-14 52.4 0.5 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Peripla_BP_6 PF13458.6 EME68260.1 - 9.8e-61 206.3 0.1 1.1e-60 206.1 0.1 1.0 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 EME68260.1 - 5.2e-20 71.7 0.0 4.4e-16 58.8 0.0 2.1 2 0 0 2 2 2 2 Periplasmic binding protein domain ANF_receptor PF01094.28 EME68260.1 - 9.8e-14 51.2 0.0 1.6e-13 50.5 0.0 1.3 1 1 0 1 1 1 1 Receptor family ligand binding region FCD PF07729.12 EME68261.1 - 3.1e-21 76.1 8.9 5.3e-21 75.3 8.9 1.4 1 0 0 1 1 1 1 FCD domain GntR PF00392.21 EME68261.1 - 5e-19 67.7 0.3 5e-19 67.7 0.3 1.9 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_Crp_2 PF13545.6 EME68261.1 - 0.00047 20.1 1.0 0.00086 19.2 0.1 1.9 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_11 PF08279.12 EME68261.1 - 0.00076 19.4 0.1 0.0017 18.2 0.1 1.5 1 0 0 1 1 1 1 HTH domain Rrf2 PF02082.20 EME68261.1 - 0.0038 17.5 0.1 0.0089 16.4 0.1 1.7 1 0 0 1 1 1 1 Transcriptional regulator TrmB PF01978.19 EME68261.1 - 0.022 14.6 0.0 0.047 13.6 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.19 EME68261.1 - 0.038 14.2 0.0 0.08 13.2 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain PaaX PF07848.12 EME68261.1 - 0.043 14.0 1.0 0.11 12.8 0.2 2.0 2 0 0 2 2 2 0 PaaX-like protein HTH_DeoR PF08220.12 EME68261.1 - 0.056 13.2 0.1 0.12 12.1 0.1 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain MarR_2 PF12802.7 EME68261.1 - 0.11 12.4 1.6 0.41 10.6 0.1 2.6 3 0 0 3 3 3 0 MarR family PK PF00224.21 EME68262.1 - 1.1e-115 386.3 0.0 1.4e-115 385.9 0.0 1.1 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.16 EME68262.1 - 2.3e-33 114.9 1.7 2.3e-33 114.9 1.7 1.8 2 0 0 2 2 2 1 Pyruvate kinase, alpha/beta domain DUF4253 PF14062.6 EME68262.1 - 0.12 12.5 0.0 7.1 6.8 0.0 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4253) MCPsignal PF00015.21 EME68263.1 - 6.8e-27 94.4 14.0 4e-26 91.9 9.3 2.3 2 0 0 2 2 2 1 Methyl-accepting chemotaxis protein (MCP) signalling domain Diacid_rec PF05651.13 EME68263.1 - 1.8e-19 69.7 0.2 5e-19 68.3 0.0 1.8 2 0 0 2 2 2 1 Putative sugar diacid recognition Baculo_PEP_C PF04513.12 EME68263.1 - 0.0005 20.1 2.4 0.69 10.0 0.1 2.9 3 1 0 3 3 3 2 Baculovirus polyhedron envelope protein, PEP, C terminus DUF948 PF06103.11 EME68263.1 - 0.00057 20.1 2.9 2.2 8.6 0.1 4.1 2 2 2 4 4 4 2 Bacterial protein of unknown function (DUF948) MscS_porin PF12795.7 EME68263.1 - 0.00087 18.9 3.5 0.012 15.2 0.1 2.3 2 0 0 2 2 2 1 Mechanosensitive ion channel porin domain Serine_rich PF08824.10 EME68263.1 - 0.0073 16.3 0.2 0.36 10.8 0.0 2.6 3 0 0 3 3 2 1 Serine rich protein interaction domain DUF3450 PF11932.8 EME68263.1 - 0.011 15.0 0.3 3.4 6.9 0.0 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF3450) Seryl_tRNA_N PF02403.22 EME68263.1 - 0.015 15.5 1.0 26 5.1 0.0 3.9 3 1 0 4 4 4 0 Seryl-tRNA synthetase N-terminal domain CENP-H PF05837.12 EME68263.1 - 0.026 14.9 2.2 2.1 8.8 0.2 2.9 2 1 1 3 3 3 0 Centromere protein H (CENP-H) Spc7 PF08317.11 EME68263.1 - 0.053 12.4 0.2 4 6.2 0.0 2.1 2 0 0 2 2 2 0 Spc7 kinetochore protein RmuC PF02646.16 EME68263.1 - 0.068 12.3 0.8 2.6 7.1 0.0 2.6 3 0 0 3 3 3 0 RmuC family DUF1664 PF07889.12 EME68263.1 - 0.11 12.6 1.0 9.2 6.3 0.0 3.0 2 2 2 4 4 4 0 Protein of unknown function (DUF1664) ZapB PF06005.12 EME68263.1 - 0.12 12.8 0.1 6.7 7.2 0.1 2.4 2 0 0 2 2 2 0 Cell division protein ZapB cNMP_binding PF00027.29 EME68264.1 - 8.8e-15 54.6 0.0 1.3e-14 54.1 0.0 1.3 1 0 0 1 1 1 1 Cyclic nucleotide-binding domain HTH_Crp_2 PF13545.6 EME68264.1 - 5e-10 39.2 0.1 9.5e-10 38.3 0.1 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Crp PF00325.20 EME68264.1 - 6.6e-05 22.5 0.0 0.00016 21.3 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, crp family DUF746 PF05344.11 EME68264.1 - 0.064 13.1 0.0 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 Domain of Unknown Function (DUF746) AAA_2 PF07724.14 EME68265.1 - 7.2e-59 198.7 0.0 8.1e-57 192.1 0.0 2.5 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) AAA_lid_9 PF17871.1 EME68265.1 - 7.6e-36 122.2 2.0 1e-35 121.8 0.1 2.2 2 0 0 2 2 1 1 AAA lid domain ClpB_D2-small PF10431.9 EME68265.1 - 9.7e-27 92.9 0.4 4.7e-26 90.7 0.1 2.5 2 0 0 2 2 1 1 C-terminal, D2-small domain, of ClpB protein Clp_N PF02861.20 EME68265.1 - 5e-23 81.0 7.5 2.2e-12 46.9 1.9 3.2 2 0 0 2 2 2 2 Clp amino terminal domain, pathogenicity island component AAA PF00004.29 EME68265.1 - 7.4e-23 81.4 0.0 3.5e-12 46.9 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 EME68265.1 - 5.1e-20 71.9 0.2 1.5e-13 50.9 0.0 3.6 2 1 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 EME68265.1 - 5e-13 49.8 3.1 2.5e-05 24.7 0.0 4.9 3 2 1 4 4 4 2 AAA ATPase domain AAA_22 PF13401.6 EME68265.1 - 2.7e-10 40.6 1.0 0.0076 16.5 0.0 4.9 3 2 0 3 3 3 2 AAA domain Sigma54_activat PF00158.26 EME68265.1 - 2.1e-07 30.8 0.3 0.00018 21.3 0.0 3.0 3 1 0 3 3 2 1 Sigma-54 interaction domain IstB_IS21 PF01695.17 EME68265.1 - 1.5e-06 28.1 0.1 0.089 12.5 0.0 3.0 3 0 0 3 3 3 2 IstB-like ATP binding protein TniB PF05621.11 EME68265.1 - 2.7e-06 26.9 0.0 0.0012 18.3 0.0 3.3 2 1 0 2 2 2 1 Bacterial TniB protein AAA_7 PF12775.7 EME68265.1 - 4.3e-06 26.4 0.0 0.01 15.4 0.0 2.4 2 1 0 2 2 2 2 P-loop containing dynein motor region AAA_18 PF13238.6 EME68265.1 - 4.6e-05 24.0 0.0 0.35 11.4 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_14 PF13173.6 EME68265.1 - 6.3e-05 23.0 0.0 0.32 11.0 0.0 2.6 2 0 0 2 2 2 2 AAA domain ATPase_2 PF01637.18 EME68265.1 - 0.00014 21.9 0.1 3.8 7.4 0.1 4.0 3 1 0 3 3 3 1 ATPase domain predominantly from Archaea RuvB_N PF05496.12 EME68265.1 - 0.00019 21.2 0.7 5.3 6.8 0.3 4.1 3 1 0 3 3 3 0 Holliday junction DNA helicase RuvB P-loop domain RsgA_GTPase PF03193.16 EME68265.1 - 0.00026 20.9 0.0 0.82 9.5 0.0 2.5 2 0 0 2 2 2 2 RsgA GTPase Mg_chelatase PF01078.21 EME68265.1 - 0.00026 20.4 0.1 1.3 8.4 0.0 3.4 2 1 1 3 3 3 1 Magnesium chelatase, subunit ChlI Roc PF08477.13 EME68265.1 - 0.00034 20.8 0.0 1.4 9.2 0.0 2.5 2 0 0 2 2 2 2 Ras of Complex, Roc, domain of DAPkinase AAA_25 PF13481.6 EME68265.1 - 0.00046 19.8 0.3 0.02 14.4 0.1 3.0 2 1 0 2 2 2 1 AAA domain AAA_28 PF13521.6 EME68265.1 - 0.00087 19.6 5.2 0.93 9.7 0.0 3.9 4 1 0 4 4 3 2 AAA domain AAA_3 PF07726.11 EME68265.1 - 0.0009 19.1 0.1 0.65 9.9 0.0 3.2 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.22 EME68265.1 - 0.001 19.4 0.0 1.8 9.0 0.0 2.5 2 0 0 2 2 2 1 RNA helicase TsaE PF02367.17 EME68265.1 - 0.0017 18.3 0.0 2.5 8.1 0.0 2.5 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_23 PF13476.6 EME68265.1 - 0.0031 18.1 6.6 1.3 9.5 0.0 3.3 2 1 0 2 2 2 1 AAA domain NACHT PF05729.12 EME68265.1 - 0.0034 17.3 0.0 0.26 11.2 0.0 2.5 2 0 0 2 2 2 1 NACHT domain AAA_24 PF13479.6 EME68265.1 - 0.0036 17.0 0.0 1.6 8.4 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 EME68265.1 - 0.004 16.9 0.0 9.6 6.0 0.0 3.3 3 0 0 3 3 3 0 P-loop containing region of AAA domain ABC_tran PF00005.27 EME68265.1 - 0.012 16.1 0.1 2.7 8.5 0.0 3.1 3 0 0 3 3 3 0 ABC transporter NTPase_1 PF03266.15 EME68265.1 - 0.013 15.4 0.1 9 6.2 0.0 3.5 3 0 0 3 3 3 0 NTPase DUF815 PF05673.13 EME68265.1 - 0.014 14.5 0.0 2.5 7.2 0.0 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF815) ResIII PF04851.15 EME68265.1 - 0.017 15.1 0.0 21 5.0 0.0 3.4 2 1 1 3 3 3 0 Type III restriction enzyme, res subunit AAA_assoc_2 PF16193.5 EME68265.1 - 0.019 15.3 0.1 0.16 12.3 0.0 2.5 2 0 0 2 2 2 0 AAA C-terminal domain DNA_pol3_delta2 PF13177.6 EME68265.1 - 0.022 14.6 0.0 2.3 8.0 0.0 2.4 2 0 0 2 2 2 0 DNA polymerase III, delta subunit AAA_19 PF13245.6 EME68265.1 - 0.024 15.0 0.2 3.2 8.1 0.1 3.1 3 1 0 3 3 2 0 AAA domain T2SSE PF00437.20 EME68265.1 - 0.028 13.5 0.0 0.062 12.4 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein Bac_DnaA PF00308.18 EME68265.1 - 0.038 13.8 0.0 7.7 6.3 0.0 3.1 3 0 0 3 3 3 0 Bacterial dnaA protein AAA_33 PF13671.6 EME68265.1 - 0.039 14.1 0.4 13 5.9 0.0 3.2 3 0 0 3 3 2 0 AAA domain Hc1 PF07432.13 EME68265.1 - 0.071 13.5 1.1 0.17 12.2 0.0 2.1 2 0 0 2 2 2 0 Histone H1-like protein Hc1 ATP_bind_1 PF03029.17 EME68265.1 - 0.12 12.1 0.0 2.7 7.7 0.0 2.4 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein Ras PF00071.22 EME68265.1 - 0.19 11.4 0.0 24 4.5 0.0 3.2 4 0 0 4 4 3 0 Ras family MscS_porin PF12795.7 EME68265.1 - 0.38 10.3 7.7 1.7 8.1 5.5 2.1 1 1 1 2 2 2 0 Mechanosensitive ion channel porin domain PC4 PF02229.16 EME68267.1 - 9.4e-08 31.6 0.0 1e-07 31.4 0.0 1.1 1 0 0 1 1 1 1 Transcriptional Coactivator p15 (PC4) TRAM_2 PF18693.1 EME68267.1 - 0.054 13.7 0.0 0.072 13.3 0.0 1.3 1 0 0 1 1 1 0 TRAM domain HTH_3 PF01381.22 EME68268.1 - 3.8e-07 30.0 2.1 3.9e-07 30.0 0.5 1.8 2 0 0 2 2 2 1 Helix-turn-helix HTH_36 PF13730.6 EME68268.1 - 1.5e-05 24.8 0.1 0.0002 21.3 0.0 2.5 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_31 PF13560.6 EME68268.1 - 2.7e-05 24.4 3.1 0.00051 20.3 0.9 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_25 PF13413.6 EME68268.1 - 0.0083 16.0 0.6 0.02 14.8 0.6 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 EME68268.1 - 0.018 15.0 0.2 1.8 8.6 0.0 2.4 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_37 PF13744.6 EME68268.1 - 0.04 13.9 0.1 0.1 12.6 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain Ribosomal_S13_N PF08069.12 EME68268.1 - 0.048 13.7 0.1 0.56 10.3 0.0 2.5 2 1 1 3 3 3 0 Ribosomal S13/S15 N-terminal domain SMC_Nse1 PF07574.13 EME68268.1 - 0.054 13.4 0.4 0.18 11.7 0.0 1.9 2 0 0 2 2 2 0 Nse1 non-SMC component of SMC5-6 complex MarR_2 PF12802.7 EME68268.1 - 0.097 12.6 1.0 0.62 10.0 0.1 2.3 2 0 0 2 2 2 0 MarR family HTH_IclR PF09339.10 EME68268.1 - 0.097 12.5 0.2 1.1 9.1 0.0 2.3 2 0 0 2 2 2 0 IclR helix-turn-helix domain GPP34 PF05719.11 EME68268.1 - 0.38 10.8 3.6 4.5 7.2 3.6 2.0 1 1 0 1 1 1 0 Golgi phosphoprotein 3 (GPP34) DUF2267 PF10025.9 EME68269.1 - 0.08 13.2 1.1 3.1 8.1 0.0 2.4 2 1 0 2 2 2 0 Uncharacterized conserved protein (DUF2267) zf-HC2 PF13490.6 EME68269.1 - 0.12 12.6 0.7 1.2 9.5 0.6 2.4 2 0 0 2 2 2 0 Putative zinc-finger LysR_substrate PF03466.20 EME68273.1 - 6e-38 130.3 0.0 7.4e-38 130.0 0.0 1.1 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 EME68273.1 - 7.2e-23 80.3 0.3 1.2e-22 79.7 0.3 1.3 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_5 PF01022.20 EME68273.1 - 0.051 13.4 0.1 0.11 12.4 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 EME68273.1 - 0.1 12.2 0.0 0.21 11.2 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Pyr_redox_2 PF07992.14 EME68274.1 - 3.2e-51 174.3 1.2 3.8e-51 174.1 1.2 1.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 EME68274.1 - 2.4e-18 66.5 0.8 1.2e-15 57.8 0.1 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 EME68274.1 - 1.3e-17 64.0 0.0 3.8e-14 52.6 0.0 2.2 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 EME68274.1 - 3.8e-05 22.9 8.9 0.0038 16.4 0.2 3.7 3 1 0 4 4 4 2 Glucose inhibited division protein A FAD_oxidored PF12831.7 EME68274.1 - 6.8e-05 22.4 3.5 0.00047 19.6 0.1 2.7 2 1 1 3 3 3 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 EME68274.1 - 0.0014 17.8 7.9 0.0019 17.4 0.2 3.0 2 2 0 3 3 3 1 FAD binding domain NAD_binding_7 PF13241.6 EME68274.1 - 0.0032 17.9 0.0 0.064 13.7 0.0 2.5 2 0 0 2 2 2 1 Putative NAD(P)-binding Thi4 PF01946.17 EME68274.1 - 0.0039 16.5 0.3 0.24 10.6 0.0 2.3 2 0 0 2 2 2 1 Thi4 family NAD_binding_8 PF13450.6 EME68274.1 - 0.004 17.3 0.4 0.028 14.6 0.0 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 EME68274.1 - 0.0044 16.6 4.1 0.49 9.9 0.2 3.4 3 0 0 3 3 3 1 FAD dependent oxidoreductase AlaDh_PNT_C PF01262.21 EME68274.1 - 0.012 15.0 0.3 1.4 8.2 0.0 2.3 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain HI0933_like PF03486.14 EME68274.1 - 0.015 14.0 2.4 0.27 9.9 0.2 3.0 3 0 0 3 3 3 0 HI0933-like protein NAD_binding_9 PF13454.6 EME68274.1 - 0.029 14.4 2.4 0.19 11.7 0.0 3.1 4 0 0 4 4 4 0 FAD-NAD(P)-binding Shikimate_DH PF01488.20 EME68274.1 - 0.031 14.3 0.3 5.4 7.1 0.0 2.9 3 0 0 3 3 3 0 Shikimate / quinate 5-dehydrogenase K_oxygenase PF13434.6 EME68274.1 - 0.064 12.4 0.1 0.25 10.5 0.1 1.8 1 1 0 1 1 1 0 L-lysine 6-monooxygenase (NADPH-requiring) Trp_halogenase PF04820.14 EME68274.1 - 0.23 10.3 1.5 4.3 6.1 0.1 2.7 3 0 0 3 3 3 0 Tryptophan halogenase AhpC-TSA PF00578.21 EME68275.1 - 6.5e-32 110.1 0.0 8e-32 109.8 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 EME68275.1 - 3e-14 53.0 0.0 3.6e-14 52.7 0.0 1.1 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.9 EME68275.1 - 3.7e-12 45.9 0.1 1.4e-11 44.0 0.1 2.0 2 0 0 2 2 2 1 C-terminal domain of 1-Cys peroxiredoxin AsnC_trans_reg PF01037.21 EME68276.1 - 1.2e-20 73.2 0.0 2e-20 72.5 0.0 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 EME68276.1 - 7.2e-19 67.1 0.1 1.1e-18 66.5 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 EME68276.1 - 3.6e-16 58.7 4.1 5.5e-16 58.1 4.1 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_20 PF12840.7 EME68276.1 - 5.3e-06 26.4 0.1 1e-05 25.5 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 EME68276.1 - 6.1e-05 22.8 0.1 9.7e-05 22.2 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 EME68276.1 - 0.00032 20.4 0.0 0.00054 19.7 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.22 EME68276.1 - 0.00067 19.5 0.0 0.0011 18.9 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_39 PF14090.6 EME68276.1 - 0.0025 17.5 0.1 0.0045 16.7 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 EME68276.1 - 0.012 15.5 0.0 0.025 14.5 0.0 1.5 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_47 PF16221.5 EME68276.1 - 0.067 12.8 0.0 0.1 12.2 0.0 1.3 1 0 0 1 1 1 0 winged helix-turn-helix Rrf2 PF02082.20 EME68276.1 - 0.093 13.1 0.0 0.16 12.3 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator HATPase_c PF02518.26 EME68278.1 - 1.5e-25 89.9 0.0 2.8e-25 89.0 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.12 EME68278.1 - 1.9e-19 69.7 0.0 1.1e-18 67.3 0.0 2.2 2 0 0 2 2 2 1 PAS fold HisKA PF00512.25 EME68278.1 - 1.4e-17 63.4 1.8 8.2e-17 61.0 0.0 2.9 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.10 EME68278.1 - 4.1e-06 27.0 0.1 2.3e-05 24.6 0.1 2.2 2 0 0 2 2 2 1 PAS fold HATPase_c_3 PF13589.6 EME68278.1 - 0.0031 17.3 0.0 0.0055 16.5 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Spc7 PF08317.11 EME68278.1 - 0.028 13.3 1.2 0.049 12.5 0.1 1.8 2 0 0 2 2 2 0 Spc7 kinetochore protein KfrA_N PF11740.8 EME68278.1 - 0.044 14.4 2.0 0.044 14.4 2.0 3.0 3 0 0 3 3 3 0 Plasmid replication region DNA-binding N-term HPTransfase PF10090.9 EME68278.1 - 0.053 13.3 0.1 0.12 12.2 0.1 1.5 1 0 0 1 1 1 0 Histidine phosphotransferase C-terminal domain HisG PF01634.18 EME68278.1 - 0.12 12.3 0.0 0.41 10.6 0.0 1.8 2 0 0 2 2 2 0 ATP phosphoribosyltransferase FlgT_N PF16548.5 EME68278.1 - 1.7 9.2 5.2 4.1 8.0 0.8 2.7 2 0 0 2 2 2 0 Flagellar assembly protein T, N-terminal domain Big_6 PF17936.1 EME68280.1 - 4.3e-14 52.5 0.0 1.1e-05 25.6 0.0 2.6 2 0 0 2 2 2 2 Bacterial Ig domain LysM PF01476.20 EME68280.1 - 1.2e-09 38.1 0.0 2.1e-09 37.3 0.0 1.4 1 0 0 1 1 1 1 LysM domain bMG3 PF11974.8 EME68280.1 - 5.7e-06 26.3 0.0 0.018 15.0 0.0 2.7 2 1 0 2 2 2 2 Bacterial alpha-2-macroglobulin MG3 domain Big_3_5 PF16640.5 EME68280.1 - 8.3e-05 22.7 0.0 0.74 10.0 0.0 2.9 2 1 0 2 2 2 2 Bacterial Ig-like domain (group 3) BiPBP_C PF06832.12 EME68280.1 - 0.00028 20.9 0.4 0.0019 18.2 0.1 2.4 1 1 0 2 2 2 1 Penicillin-Binding Protein C-terminus Family Peptidase_C25_C PF03785.14 EME68280.1 - 0.056 13.3 0.0 1.8 8.5 0.0 2.8 3 0 0 3 3 3 0 Peptidase family C25, C terminal ig-like domain IDH PF03971.14 EME68281.1 - 0 1323.5 0.2 0 1323.3 0.2 1.0 1 0 0 1 1 1 1 Monomeric isocitrate dehydrogenase Iso_dh PF00180.20 EME68282.1 - 3.3e-75 253.4 0.0 3.9e-75 253.2 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Phe_ZIP PF08916.11 EME68282.1 - 0.018 15.7 0.2 0.052 14.3 0.0 1.9 2 0 0 2 2 2 0 Phenylalanine zipper AAA_2 PF07724.14 EME68283.1 - 1.7e-49 168.2 0.0 2.6e-46 157.9 0.0 2.8 3 0 0 3 3 2 2 AAA domain (Cdc48 subfamily) AAA_lid_9 PF17871.1 EME68283.1 - 6.7e-29 99.9 2.1 1.8e-28 98.5 2.1 1.8 1 0 0 1 1 1 1 AAA lid domain ClpB_D2-small PF10431.9 EME68283.1 - 9.8e-26 89.6 0.1 3.7e-25 87.8 0.1 2.1 1 0 0 1 1 1 1 C-terminal, D2-small domain, of ClpB protein AAA PF00004.29 EME68283.1 - 2e-25 89.7 0.0 5.5e-11 43.0 0.0 3.4 3 0 0 3 3 3 2 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 EME68283.1 - 4.9e-20 71.9 0.0 2.1e-13 50.4 0.0 3.0 3 0 0 3 3 3 2 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 EME68283.1 - 1.3e-12 48.5 1.0 0.00022 21.7 0.0 4.0 3 1 1 4 4 4 2 AAA ATPase domain Clp_N PF02861.20 EME68283.1 - 3e-12 46.5 1.0 8.8e-12 45.0 1.0 1.9 1 0 0 1 1 1 1 Clp amino terminal domain, pathogenicity island component Sigma54_activat PF00158.26 EME68283.1 - 5.5e-10 39.2 0.0 3.2e-05 23.7 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain RuvB_N PF05496.12 EME68283.1 - 1.5e-08 34.6 0.9 0.018 14.8 0.0 4.2 3 1 0 3 3 3 2 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 EME68283.1 - 4.2e-07 30.3 2.3 0.034 14.4 1.1 4.5 2 2 1 3 3 2 2 AAA domain AAA_18 PF13238.6 EME68283.1 - 1.1e-06 29.2 0.0 0.027 15.0 0.0 2.9 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 EME68283.1 - 1.5e-06 27.7 0.0 0.058 12.8 0.0 3.4 2 1 0 3 3 3 2 Magnesium chelatase, subunit ChlI AAA_3 PF07726.11 EME68283.1 - 1.8e-06 27.8 0.1 0.00031 20.6 0.0 3.1 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) TniB PF05621.11 EME68283.1 - 1.4e-05 24.6 0.0 0.042 13.2 0.0 3.7 2 1 0 2 2 2 1 Bacterial TniB protein AAA_14 PF13173.6 EME68283.1 - 5.1e-05 23.3 0.0 0.29 11.2 0.0 3.0 3 1 0 3 3 2 2 AAA domain AAA_7 PF12775.7 EME68283.1 - 0.00029 20.4 0.0 0.96 8.9 0.0 2.7 3 0 0 3 3 2 2 P-loop containing dynein motor region RNA_helicase PF00910.22 EME68283.1 - 0.00035 20.9 0.0 0.81 10.1 0.0 3.0 3 0 0 3 3 3 1 RNA helicase TIP49 PF06068.13 EME68283.1 - 0.00035 19.9 0.3 0.82 8.8 0.0 2.5 3 0 0 3 3 2 2 TIP49 P-loop domain TsaE PF02367.17 EME68283.1 - 0.00052 20.0 0.0 0.19 11.7 0.0 2.5 2 0 0 2 2 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_6 PF12774.7 EME68283.1 - 0.0006 18.9 0.0 0.0013 17.8 0.0 1.4 1 0 0 1 1 1 1 Hydrolytic ATP binding site of dynein motor region IstB_IS21 PF01695.17 EME68283.1 - 0.0012 18.7 0.0 0.41 10.4 0.0 2.6 2 0 0 2 2 2 1 IstB-like ATP binding protein Torsin PF06309.11 EME68283.1 - 0.0014 18.7 0.0 0.0046 17.1 0.0 1.8 2 0 0 2 2 1 1 Torsin AAA_33 PF13671.6 EME68283.1 - 0.0029 17.8 0.0 1.4 9.1 0.0 2.7 2 0 0 2 2 2 1 AAA domain ResIII PF04851.15 EME68283.1 - 0.0085 16.1 0.0 0.52 10.3 0.0 3.0 2 1 1 3 3 3 1 Type III restriction enzyme, res subunit DNA_pol3_delta2 PF13177.6 EME68283.1 - 0.0085 15.9 0.0 0.36 10.6 0.0 3.2 4 0 0 4 4 4 1 DNA polymerase III, delta subunit AAA_25 PF13481.6 EME68283.1 - 0.017 14.7 0.7 2.1 7.9 0.0 3.5 3 0 0 3 3 3 0 AAA domain NACHT PF05729.12 EME68283.1 - 0.02 14.8 0.0 1.5 8.7 0.0 2.7 2 0 0 2 2 2 0 NACHT domain Rad17 PF03215.15 EME68283.1 - 0.021 14.7 0.0 0.093 12.6 0.0 1.9 2 0 0 2 2 2 0 Rad17 P-loop domain AAA_28 PF13521.6 EME68283.1 - 0.026 14.8 0.0 3 8.1 0.0 2.7 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.12 EME68283.1 - 0.043 13.1 0.0 5.2 6.3 0.0 2.7 2 0 0 2 2 2 0 Zeta toxin AAA_17 PF13207.6 EME68283.1 - 0.045 14.2 0.0 5.4 7.4 0.0 2.6 2 0 0 2 2 2 0 AAA domain IPT PF01745.16 EME68283.1 - 0.099 12.0 0.0 0.27 10.6 0.0 1.7 1 0 0 1 1 1 0 Isopentenyl transferase NTPase_1 PF03266.15 EME68283.1 - 0.13 12.2 0.2 55 3.6 0.0 3.8 5 0 0 5 5 4 0 NTPase CbiA PF01656.23 EME68283.1 - 0.14 12.2 0.0 37 4.4 0.0 3.6 4 0 0 4 4 3 0 CobQ/CobB/MinD/ParA nucleotide binding domain ClpS PF02617.17 EME68284.1 - 4.6e-36 122.5 0.5 5.6e-36 122.2 0.5 1.1 1 0 0 1 1 1 1 ATP-dependent Clp protease adaptor protein ClpS Phasin_2 PF09361.10 EME68285.1 - 3.5e-23 81.8 35.3 1.4e-21 76.6 1.7 4.4 2 1 3 5 5 5 4 Phasin protein MCR_gamma PF02240.16 EME68285.1 - 0.13 11.5 0.4 0.23 10.7 0.4 1.5 1 1 0 1 1 1 0 Methyl-coenzyme M reductase gamma subunit DUF659 PF04937.15 EME68285.1 - 0.5 10.2 3.1 0.66 9.8 0.2 2.3 1 1 0 2 2 2 0 Protein of unknown function (DUF 659) DUF1896 PF08989.10 EME68285.1 - 1.5 8.9 15.4 0.51 10.4 1.5 4.0 1 1 4 5 5 5 0 Domain of unknown function (DUF1896) Peptidase_S11 PF00768.20 EME68287.1 - 3.4e-55 187.1 0.0 4.7e-55 186.6 0.0 1.1 1 0 0 1 1 1 1 D-alanyl-D-alanine carboxypeptidase Beta-lactamase2 PF13354.6 EME68287.1 - 1.1e-10 41.5 0.0 1.7e-10 40.9 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase enzyme family SPOR PF05036.13 EME68287.1 - 4.1e-08 33.5 0.5 1.9e-07 31.4 0.5 2.2 1 0 0 1 1 1 1 Sporulation related domain Peptidase_S13 PF02113.15 EME68287.1 - 0.013 14.3 0.2 0.02 13.7 0.2 1.2 1 0 0 1 1 1 0 D-Ala-D-Ala carboxypeptidase 3 (S13) family GGACT PF06094.12 EME68288.1 - 2e-16 60.7 0.0 2.4e-16 60.4 0.0 1.1 1 0 0 1 1 1 1 Gamma-glutamyl cyclotransferase, AIG2-like AIG2_2 PF13772.6 EME68288.1 - 0.21 12.0 0.0 0.31 11.5 0.0 1.2 1 0 0 1 1 1 0 AIG2-like family GAF PF01590.26 EME68289.1 - 0.0015 19.2 0.0 0.0016 19.0 0.0 1.1 1 0 0 1 1 1 1 GAF domain GAF_2 PF13185.6 EME68289.1 - 0.0018 18.6 0.1 0.0021 18.3 0.1 1.1 1 0 0 1 1 1 1 GAF domain cNMP_binding PF00027.29 EME68290.1 - 1.2e-16 60.5 0.0 2e-16 59.8 0.0 1.3 1 0 0 1 1 1 1 Cyclic nucleotide-binding domain HTH_Crp_2 PF13545.6 EME68290.1 - 8.9e-11 41.6 0.0 1.8e-10 40.6 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain GntR PF00392.21 EME68290.1 - 0.00015 21.4 0.1 0.00033 20.2 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family Response_reg PF00072.24 EME68291.1 - 9.6e-13 48.3 0.0 1.1e-12 48.1 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain Transposase_20 PF02371.16 EME68292.1 - 3.8e-25 88.0 0.1 9.9e-25 86.7 0.1 1.7 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family DEDD_Tnp_IS110 PF01548.17 EME68292.1 - 7.7e-13 48.6 0.0 1.6e-12 47.6 0.0 1.6 1 0 0 1 1 1 1 Transposase HHH_3 PF12836.7 EME68292.1 - 0.084 13.2 0.0 0.15 12.3 0.0 1.3 1 0 0 1 1 1 0 Helix-hairpin-helix motif UCR_UQCRX_QCR9 PF05365.12 EME68294.1 - 0.022 14.7 0.3 0.064 13.2 0.0 1.9 1 1 1 2 2 2 0 Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like FLgD_tudor PF13861.6 EME68295.1 - 0.074 13.3 10.0 0.69 10.2 2.2 3.2 3 0 0 3 3 3 0 FlgD Tudor-like domain PGC7_Stella PF15549.6 EME68295.1 - 2 8.4 12.9 3 7.8 12.9 1.2 1 0 0 1 1 1 0 PGC7/Stella/Dppa3 domain PsbW PF07123.12 EME68297.1 - 0.32 11.0 3.0 0.35 10.9 3.0 1.1 1 0 0 1 1 1 0 Photosystem II reaction centre W protein (PsbW) FeoB_associated PF12669.7 EME68298.1 - 7.7e-05 23.0 3.8 0.00012 22.5 3.8 1.3 1 0 0 1 1 1 1 FeoB-associated Cys-rich membrane protein Mitofilin PF09731.9 EME68301.1 - 0.00044 19.2 0.3 0.00044 19.2 0.3 2.0 2 0 0 2 2 2 1 Mitochondrial inner membrane protein HemY_N PF07219.13 EME68302.1 - 1.4e-13 51.0 0.5 1.4e-13 51.0 0.5 3.4 4 0 0 4 4 4 1 HemY protein N-terminus TPR_9 PF13371.6 EME68302.1 - 0.0009 19.3 5.0 0.0009 19.3 5.0 2.7 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_19 PF14559.6 EME68302.1 - 0.0011 19.5 15.4 0.018 15.5 0.4 3.5 3 0 0 3 3 3 2 Tetratricopeptide repeat Rubredoxin_2 PF18073.1 EME68302.1 - 0.042 13.6 6.0 0.076 12.8 6.0 1.4 1 0 0 1 1 1 0 Rubredoxin metal binding domain TPR_2 PF07719.17 EME68302.1 - 0.078 13.1 3.2 5.7 7.3 0.2 3.1 3 0 0 3 3 3 0 Tetratricopeptide repeat zf-RanBP PF00641.18 EME68302.1 - 1.3 8.4 4.9 3.4 7.0 4.9 1.7 1 1 0 1 1 1 0 Zn-finger in Ran binding protein and others DUF445 PF04286.12 EME68303.1 - 3.6e-91 306.7 0.0 4e-91 306.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF445) DnaI_N PF07319.11 EME68303.1 - 0.12 13.1 0.0 0.25 12.0 0.0 1.5 1 0 0 1 1 1 0 Primosomal protein DnaI N-terminus MFS_1 PF07690.16 EME68304.1 - 3.7e-28 98.5 58.0 3.9e-14 52.3 30.5 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.6 EME68304.1 - 5.9e-10 38.3 34.0 8e-10 37.8 34.0 1.2 1 0 0 1 1 1 1 MFS/sugar transport protein Sugar_tr PF00083.24 EME68304.1 - 7.9e-06 25.0 7.5 7.9e-06 25.0 7.5 3.1 2 1 1 3 3 3 2 Sugar (and other) transporter OATP PF03137.20 EME68304.1 - 0.44 8.8 3.4 1.3 7.2 3.2 2.0 1 1 0 1 1 1 0 Organic Anion Transporter Polypeptide (OATP) family YfhO PF09586.10 EME68304.1 - 0.71 8.0 3.6 1.4 7.0 3.6 1.4 1 0 0 1 1 1 0 Bacterial membrane protein YfhO Phage_holin_3_6 PF07332.11 EME68305.1 - 0.015 15.4 3.6 0.017 15.1 3.6 1.1 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III Bax1-I PF01027.20 EME68305.1 - 0.031 14.1 1.4 0.034 14.0 1.4 1.0 1 0 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 DUF4131 PF13567.6 EME68305.1 - 0.09 12.4 1.7 0.094 12.4 1.7 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF2892 PF11127.8 EME68305.1 - 0.17 12.0 8.0 0.27 11.3 8.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2892) PEP-CTERM PF07589.11 EME68305.1 - 1.3 9.2 7.5 3.1 8.0 2.0 2.3 2 0 0 2 2 2 0 PEP-CTERM motif FixS PF03597.15 EME68305.1 - 2.9 7.7 10.7 1.8 8.4 4.4 2.3 2 0 0 2 2 2 0 Cytochrome oxidase maturation protein cbb3-type MCR PF18509.1 EME68306.1 - 2.6e-30 103.6 13.0 5.5e-15 54.6 4.5 2.6 2 0 0 2 2 2 2 Magnetochrome domain Trypsin_2 PF13365.6 EME68306.1 - 1.2e-28 100.9 4.2 2.2e-28 100.1 2.3 2.4 2 0 0 2 2 2 1 Trypsin-like peptidase domain PDZ_2 PF13180.6 EME68306.1 - 3.8e-24 84.8 1.5 4.3e-13 49.4 0.0 3.3 4 0 0 4 4 4 2 PDZ domain PDZ_6 PF17820.1 EME68306.1 - 5.9e-24 83.7 9.4 9.4e-14 51.0 0.0 3.3 3 0 0 3 3 3 2 PDZ domain PDZ PF00595.24 EME68306.1 - 4.4e-19 68.6 0.2 2e-08 34.5 0.0 2.9 3 0 0 3 3 3 2 PDZ domain Trypsin PF00089.26 EME68306.1 - 1.1e-14 54.8 0.1 1.7e-14 54.2 0.1 1.3 1 0 0 1 1 1 1 Trypsin Tricorn_PDZ PF14685.6 EME68306.1 - 3.3e-05 23.8 0.2 0.017 15.1 0.0 2.6 2 0 0 2 2 2 1 Tricorn protease PDZ domain Cytochrom_C PF00034.21 EME68306.1 - 0.00063 20.8 0.5 0.046 14.9 0.1 2.5 2 0 0 2 2 2 1 Cytochrome c Cytochrome_CBB3 PF13442.6 EME68306.1 - 0.0033 17.7 0.8 1.1 9.7 0.3 2.7 2 0 0 2 2 2 1 Cytochrome C oxidase, cbb3-type, subunit III Peptidase_S55 PF05580.12 EME68306.1 - 0.0039 17.2 1.2 0.0058 16.6 0.4 1.6 2 0 0 2 2 2 1 SpoIVB peptidase S55 Peptidase_S29 PF02907.15 EME68306.1 - 0.0072 16.1 0.1 0.017 14.8 0.1 1.6 1 0 0 1 1 1 1 Hepatitis C virus NS3 protease Peptidase_S46 PF10459.9 EME68306.1 - 0.015 14.0 0.7 1.1 7.9 0.0 2.0 2 0 0 2 2 2 0 Peptidase S46 CCP_MauG PF03150.14 EME68306.1 - 0.1 13.2 0.0 7.2 7.3 0.0 2.3 2 0 0 2 2 2 0 Di-haem cytochrome c peroxidase PSCyt3 PF07627.11 EME68306.1 - 0.13 12.5 0.1 27 5.1 0.0 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1588) Cytochrom_c3_2 PF14537.6 EME68306.1 - 0.25 11.8 2.3 1 9.9 2.3 1.8 1 1 0 1 1 1 0 Cytochrome c3 Cytochrome_C7 PF14522.6 EME68306.1 - 0.6 10.2 3.3 6 6.9 3.7 2.0 1 1 1 2 2 2 0 Cytochrome c7 and related cytochrome c Paired_CXXCH_1 PF09699.10 EME68306.1 - 1.5 8.6 4.1 21 4.9 4.1 2.2 1 1 0 1 1 1 0 Doubled CXXCH motif (Paired_CXXCH_1) MreB_Mbl PF06723.13 EME68308.1 - 6.6e-19 67.9 0.0 8.2e-19 67.6 0.0 1.0 1 0 0 1 1 1 1 MreB/Mbl protein Actin PF00022.19 EME68308.1 - 3.1e-10 39.2 0.0 8.2e-07 28.0 0.0 2.0 1 1 0 2 2 2 2 Actin FtsA PF14450.6 EME68308.1 - 0.0015 19.0 0.0 0.0029 18.0 0.0 1.5 1 0 0 1 1 1 1 Cell division protein FtsA DDR PF08841.10 EME68308.1 - 0.023 13.7 0.0 0.55 9.2 0.0 2.1 2 0 0 2 2 2 0 Diol dehydratase reactivase ATPase-like domain HSP70 PF00012.20 EME68308.1 - 0.034 12.3 0.2 0.44 8.7 0.2 2.0 1 1 0 1 1 1 0 Hsp70 protein LapA_dom PF06305.11 EME68309.1 - 0.0057 16.4 0.5 0.0057 16.4 0.5 2.1 1 1 1 2 2 2 1 Lipopolysaccharide assembly protein A domain PsbX PF06596.11 EME68309.1 - 6.1 6.9 9.7 0.27 11.3 0.9 2.4 2 1 1 3 3 3 0 Photosystem II reaction centre X protein (PsbX) Cation_efflux PF01545.21 EME68310.1 - 4.5e-39 134.3 9.7 5.4e-39 134.0 9.7 1.1 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 EME68310.1 - 9.4e-16 57.7 0.6 1.6e-15 57.0 0.6 1.3 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter CitMHS PF03600.16 EME68311.1 - 3e-26 92.3 40.5 7.6e-26 91.0 40.5 1.6 1 1 0 1 1 1 1 Citrate transporter Na_sulph_symp PF00939.19 EME68311.1 - 5e-06 25.8 28.5 0.00011 21.5 15.2 2.2 2 0 0 2 2 2 2 Sodium:sulfate symporter transmembrane region TauE PF01925.19 EME68312.1 - 1.5e-35 122.9 30.6 1.5e-35 122.9 30.6 2.0 2 0 0 2 2 2 1 Sulfite exporter TauE/SafE Trypsin_2 PF13365.6 EME68312.1 - 9.3e-16 59.1 0.8 2e-15 58.0 0.8 1.6 1 0 0 1 1 1 1 Trypsin-like peptidase domain MCR PF18509.1 EME68313.1 - 8.8e-15 54.0 5.1 3.9e-10 39.1 0.8 2.5 2 0 0 2 2 2 2 Magnetochrome domain PDZ_2 PF13180.6 EME68313.1 - 1.3e-05 25.4 0.0 2.4e-05 24.6 0.0 1.4 1 0 0 1 1 1 1 PDZ domain PDZ_6 PF17820.1 EME68313.1 - 0.0012 18.7 0.0 0.0022 17.8 0.0 1.5 1 0 0 1 1 1 1 PDZ domain PDZ_1 PF12812.7 EME68313.1 - 0.0092 16.0 0.0 0.024 14.7 0.0 1.7 2 0 0 2 2 2 1 PDZ-like domain PDZ PF00595.24 EME68313.1 - 0.09 13.1 0.0 0.16 12.3 0.0 1.5 1 0 0 1 1 1 0 PDZ domain TPR_2 PF07719.17 EME68314.1 - 4.7e-20 70.0 0.1 3.4e-05 23.6 0.1 5.2 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_16 PF13432.6 EME68314.1 - 3e-19 69.4 0.4 5.9e-08 33.2 0.0 3.2 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_1 PF00515.28 EME68314.1 - 3.3e-19 67.8 0.1 2.7e-06 26.9 0.0 4.9 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_19 PF14559.6 EME68314.1 - 5e-18 65.4 0.5 1e-07 32.3 0.1 3.1 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_8 PF13181.6 EME68314.1 - 2.3e-16 58.5 0.0 0.00042 20.3 0.0 5.1 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_14 PF13428.6 EME68314.1 - 3.2e-15 55.5 1.1 0.0032 18.2 0.0 5.2 1 1 5 6 6 5 3 Tetratricopeptide repeat TPR_12 PF13424.6 EME68314.1 - 7.5e-15 55.0 0.2 1.2e-05 25.5 0.0 4.3 2 1 2 4 4 4 4 Tetratricopeptide repeat TPR_7 PF13176.6 EME68314.1 - 2.8e-13 48.9 0.1 0.0029 17.5 0.0 5.1 5 1 0 5 5 5 3 Tetratricopeptide repeat TPR_11 PF13414.6 EME68314.1 - 1.4e-11 43.9 0.0 0.0057 16.3 0.0 4.4 2 1 2 4 4 4 4 TPR repeat TPR_17 PF13431.6 EME68314.1 - 1.6e-10 40.6 0.0 0.00092 19.4 0.0 4.6 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_10 PF13374.6 EME68314.1 - 2.1e-10 40.1 1.8 1.8 8.5 0.0 5.2 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_6 PF13174.6 EME68314.1 - 1.5e-09 37.8 0.0 0.42 11.4 0.0 5.0 5 0 0 5 5 5 2 Tetratricopeptide repeat ANAPC3 PF12895.7 EME68314.1 - 2.2e-09 37.4 0.0 7.4e-05 22.9 0.0 2.2 1 1 1 2 2 2 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_9 PF13371.6 EME68314.1 - 5.9e-07 29.5 0.5 1.4 9.1 0.1 4.0 1 1 3 4 4 4 2 Tetratricopeptide repeat DUF3856 PF12968.7 EME68314.1 - 6.1e-07 29.6 0.7 0.028 14.5 0.0 3.1 2 1 1 3 3 3 3 Domain of Unknown Function (DUF3856) TPR_20 PF14561.6 EME68314.1 - 3.4e-06 27.3 0.1 0.073 13.4 0.0 3.9 1 1 3 4 4 4 1 Tetratricopeptide repeat TPR_4 PF07721.14 EME68314.1 - 0.00011 22.5 0.1 6.3 7.7 0.0 4.4 5 0 0 5 5 4 1 Tetratricopeptide repeat TPR_15 PF13429.6 EME68314.1 - 0.00027 20.3 0.0 0.057 12.6 0.0 2.0 1 1 1 2 2 2 2 Tetratricopeptide repeat MIT PF04212.18 EME68314.1 - 0.0047 17.0 0.0 1.6 8.9 0.0 3.3 4 0 0 4 4 4 1 MIT (microtubule interacting and transport) domain BTAD PF03704.17 EME68314.1 - 0.015 15.8 0.0 0.061 13.8 0.0 1.8 2 0 0 2 2 2 0 Bacterial transcriptional activator domain PPR PF01535.20 EME68314.1 - 0.026 14.7 0.0 54 4.4 0.0 4.1 4 0 0 4 4 4 0 PPR repeat Fis1_TPR_C PF14853.6 EME68314.1 - 0.081 13.0 0.1 32 4.7 0.1 3.2 3 0 0 3 3 3 0 Fis1 C-terminal tetratricopeptide repeat Clathrin PF00637.20 EME68314.1 - 0.16 11.8 0.0 6.8 6.6 0.0 2.6 1 1 1 2 2 2 0 Region in Clathrin and VPS AAA PF00004.29 EME68315.1 - 9.4e-33 113.4 0.0 2.6e-32 112.0 0.0 1.8 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) Peptidase_M41 PF01434.18 EME68315.1 - 2.7e-18 66.5 2.3 1e-17 64.6 2.3 1.9 1 1 0 1 1 1 1 Peptidase family M41 RuvB_N PF05496.12 EME68315.1 - 3.4e-05 23.7 0.0 8.4e-05 22.4 0.0 1.6 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_18 PF13238.6 EME68315.1 - 0.0002 21.9 0.0 0.00041 20.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 EME68315.1 - 0.00022 21.7 1.8 0.0098 16.3 0.1 3.3 1 1 1 3 3 3 1 AAA ATPase domain AAA_33 PF13671.6 EME68315.1 - 0.0011 19.1 0.0 0.0039 17.3 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_28 PF13521.6 EME68315.1 - 0.0016 18.7 0.1 0.0054 17.0 0.1 1.9 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 EME68315.1 - 0.0028 17.9 0.2 0.23 11.7 0.1 2.9 2 1 0 2 2 2 1 AAA domain TsaE PF02367.17 EME68315.1 - 0.0035 17.3 0.0 0.0066 16.4 0.0 1.4 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_5 PF07728.14 EME68315.1 - 0.006 16.6 0.1 0.018 15.1 0.1 2.0 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) IstB_IS21 PF01695.17 EME68315.1 - 0.0073 16.1 0.0 0.016 15.0 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_2 PF07724.14 EME68315.1 - 0.02 15.0 0.0 0.04 14.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) AAA_25 PF13481.6 EME68315.1 - 0.025 14.2 0.4 0.19 11.3 0.2 2.6 2 1 1 3 3 3 0 AAA domain TIP49 PF06068.13 EME68315.1 - 0.033 13.4 0.0 0.052 12.7 0.0 1.2 1 0 0 1 1 1 0 TIP49 P-loop domain NACHT PF05729.12 EME68315.1 - 0.055 13.4 0.3 0.39 10.6 0.1 2.3 2 0 0 2 2 2 0 NACHT domain AAA_24 PF13479.6 EME68315.1 - 0.095 12.4 0.0 0.19 11.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_11 PF13086.6 EME68315.1 - 0.14 11.9 0.0 0.24 11.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 EME68315.1 - 0.15 11.5 0.1 0.29 10.5 0.1 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_17 PF13207.6 EME68315.1 - 0.16 12.4 0.0 0.31 11.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain Peptidase_C28 PF05408.11 EME68317.1 - 0.019 14.7 0.0 0.027 14.2 0.0 1.2 1 0 0 1 1 1 0 Foot-and-mouth virus L-proteinase HTH_3 PF01381.22 EME68318.1 - 1.1e-07 31.8 0.0 1.3e-07 31.5 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 EME68318.1 - 2.5e-06 27.7 0.0 3.7e-06 27.2 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 EME68318.1 - 0.00015 21.7 0.0 0.0002 21.3 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 EME68318.1 - 0.083 12.8 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HMMR_N PF15905.5 EME68320.1 - 0.017 14.6 0.4 0.017 14.6 0.4 1.0 1 0 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal Wtap PF17098.5 EME68320.1 - 0.036 14.0 0.4 0.036 14.0 0.4 1.1 1 0 0 1 1 1 0 WTAP/Mum2p family TSC22 PF01166.18 EME68320.1 - 0.068 13.5 0.2 0.071 13.4 0.2 1.2 1 0 0 1 1 1 0 TSC-22/dip/bun family rve PF00665.26 EME68321.1 - 2.9e-26 92.0 0.0 6.9e-26 90.8 0.0 1.7 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 EME68321.1 - 9.4e-17 60.9 0.6 6.2e-15 55.1 0.8 2.6 2 0 0 2 2 2 1 HTH-like domain rve_3 PF13683.6 EME68321.1 - 4.8e-11 42.3 0.0 8.4e-11 41.5 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain rve_2 PF13333.6 EME68321.1 - 0.0035 17.5 0.0 0.0061 16.7 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_Crp_2 PF13545.6 EME68321.1 - 0.04 13.9 0.2 0.18 11.8 0.2 2.1 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain ROS_MUCR PF05443.11 EME68322.1 - 1.4e-42 144.7 0.0 1.6e-42 144.5 0.0 1.1 1 0 0 1 1 1 1 ROS/MUCR transcriptional regulator protein DUF4954 PF16314.5 EME68322.1 - 0.026 12.7 0.0 0.03 12.4 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4954) Bac_DNA_binding PF00216.21 EME68323.1 - 8e-32 109.3 0.0 8.8e-32 109.2 0.0 1.0 1 0 0 1 1 1 1 Bacterial DNA-binding protein HU-HIG PF18291.1 EME68323.1 - 1.3e-06 28.6 0.0 1.3e-06 28.5 0.0 1.1 1 0 0 1 1 1 1 HU domain fused to wHTH, Ig, or Glycine-rich motif DUF2267 PF10025.9 EME68323.1 - 0.043 14.1 0.0 0.056 13.7 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2267) DUF1465 PF07323.12 EME68324.1 - 7.8e-30 103.8 2.0 8.3e-30 103.7 2.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1465) DUF4044 PF13253.6 EME68324.1 - 0.22 11.1 0.1 0.33 10.5 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4044) MCPsignal PF00015.21 EME68325.1 - 2.4e-32 112.1 49.1 2.5e-32 112.1 24.6 3.7 2 1 1 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain 4HB_MCP_1 PF12729.7 EME68325.1 - 1.6e-20 73.4 0.0 1.6e-20 73.4 0.0 4.0 3 2 1 4 4 4 1 Four helix bundle sensory module for signal transduction TarH PF02203.15 EME68325.1 - 6.4e-15 55.5 2.4 6.4e-15 55.5 2.4 3.3 3 1 0 2 2 2 1 Tar ligand binding domain homologue HAMP PF00672.25 EME68325.1 - 3.3e-09 37.0 0.0 3.3e-09 37.0 0.0 5.1 7 1 1 8 8 5 1 HAMP domain DUF1664 PF07889.12 EME68325.1 - 0.00013 22.0 15.1 0.046 13.7 0.5 4.7 3 2 1 4 4 4 2 Protein of unknown function (DUF1664) Syntaxin_2 PF14523.6 EME68325.1 - 0.0028 18.0 8.0 0.98 9.8 0.1 5.0 3 2 1 5 5 5 1 Syntaxin-like protein DUF948 PF06103.11 EME68325.1 - 0.0035 17.6 26.5 0.14 12.4 2.4 5.7 3 1 3 6 6 6 4 Bacterial protein of unknown function (DUF948) PIN_8 PF18476.1 EME68325.1 - 0.043 13.7 11.8 0.45 10.3 0.2 3.6 2 1 2 4 4 4 0 PIN like domain BAR_3 PF16746.5 EME68325.1 - 0.1 12.3 0.6 0.65 9.7 0.0 2.5 3 0 0 3 3 3 0 BAR domain of APPL family Laminin_I PF06008.14 EME68325.1 - 0.39 10.4 19.0 0.093 12.4 3.8 3.0 1 1 0 2 2 2 0 Laminin Domain I Dynactin_p22 PF07426.11 EME68325.1 - 0.72 9.7 2.7 1.3 8.9 0.1 2.6 3 0 0 3 3 3 0 Dynactin subunit p22 DUF16 PF01519.16 EME68325.1 - 1.3 9.5 7.9 8.3 7.0 0.0 4.0 2 1 1 4 4 4 0 Protein of unknown function DUF16 TACC_C PF05010.14 EME68325.1 - 1.7 8.4 6.9 6.6 6.5 0.9 3.3 3 2 0 3 3 3 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal Golgin_A5 PF09787.9 EME68325.1 - 1.8 8.0 12.4 4.4 6.7 2.8 2.8 3 0 0 3 3 3 0 Golgin subfamily A member 5 TMPIT PF07851.13 EME68325.1 - 2.5 7.3 4.9 5.5 6.1 0.2 2.7 3 0 0 3 3 3 0 TMPIT-like protein IFT57 PF10498.9 EME68325.1 - 3.8 6.4 6.8 8.8 5.2 0.2 2.6 3 0 0 3 3 3 0 Intra-flagellar transport protein 57 Lectin_N PF03954.14 EME68325.1 - 6.3 6.5 9.5 0.98 9.2 1.1 3.3 3 0 0 3 3 3 0 Hepatic lectin, N-terminal domain FlaC_arch PF05377.11 EME68325.1 - 6.4 7.3 6.0 18 5.8 0.0 4.1 4 1 1 5 5 5 0 Flagella accessory protein C (FlaC) Vps53_N PF04100.12 EME68325.1 - 9.1 5.1 10.3 2.1 7.2 2.4 2.8 1 1 1 2 2 2 0 Vps53-like, N-terminal DUF3450 PF11932.8 EME68325.1 - 9.9 5.4 22.0 0.034 13.4 3.9 2.9 3 1 0 3 3 3 0 Protein of unknown function (DUF3450) GerE PF00196.19 EME68327.1 - 2.5e-16 58.9 0.7 4.2e-16 58.2 0.7 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Response_reg PF00072.24 EME68327.1 - 4e-15 56.0 0.0 5.8e-15 55.4 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain Sigma70_r4_2 PF08281.12 EME68327.1 - 2.3e-05 24.0 0.1 0.0001 21.9 0.1 2.2 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_38 PF13936.6 EME68327.1 - 0.00089 19.0 0.2 0.0017 18.1 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 EME68327.1 - 0.0027 17.2 2.1 0.0035 16.8 0.2 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_40 PF14493.6 EME68327.1 - 0.0055 17.1 0.2 0.013 16.0 0.1 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain DUF742 PF05331.11 EME68327.1 - 0.023 14.5 1.3 0.043 13.6 0.2 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF742) HTH_24 PF13412.6 EME68327.1 - 0.026 14.1 0.1 0.065 12.8 0.1 1.8 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_23 PF13384.6 EME68327.1 - 0.044 13.6 0.0 0.11 12.3 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain LexA_DNA_bind PF01726.16 EME68327.1 - 0.15 11.8 0.3 0.89 9.4 0.3 2.1 1 1 0 1 1 1 0 LexA DNA binding domain HTH_AsnC-type PF13404.6 EME68327.1 - 0.28 11.1 1.7 0.79 9.6 0.0 2.6 3 0 0 3 3 3 0 AsnC-type helix-turn-helix domain HTH_Tnp_1 PF01527.20 EME68328.1 - 1.1e-24 86.5 0.2 1.4e-24 86.2 0.2 1.1 1 0 0 1 1 1 1 Transposase HTH_23 PF13384.6 EME68328.1 - 8.9e-05 22.2 0.1 0.00029 20.6 0.0 1.9 1 1 1 2 2 2 1 Homeodomain-like domain HTH_Tnp_1_2 PF13022.6 EME68328.1 - 0.0014 18.8 0.2 0.0026 17.9 0.1 1.5 1 1 1 2 2 2 1 Helix-turn-helix of insertion element transposase HTH_28 PF13518.6 EME68328.1 - 0.0025 17.9 0.0 0.0046 17.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.6 EME68328.1 - 0.036 14.1 0.1 0.069 13.2 0.1 1.8 1 1 0 1 1 1 0 Winged helix-turn helix HTH_7 PF02796.15 EME68328.1 - 0.11 12.6 0.2 0.27 11.4 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase Transposase_mut PF00872.18 EME68329.1 - 7e-07 28.4 0.0 8.3e-07 28.2 0.0 1.0 1 0 0 1 1 1 1 Transposase, Mutator family HATPase_c PF02518.26 EME68330.1 - 4.3e-25 88.4 0.0 4e-24 85.3 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 EME68330.1 - 6.9e-11 42.0 0.4 1.2e-10 41.2 0.4 1.4 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain Sen15 PF09631.10 EME68330.1 - 0.13 12.6 0.0 0.22 11.8 0.0 1.4 1 0 0 1 1 1 0 Sen15 protein HATPase_c PF02518.26 EME68331.1 - 1e-22 80.8 0.0 1.7e-22 80.0 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 EME68331.1 - 1.1e-09 38.1 0.2 2.9e-09 36.8 0.1 1.8 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.6 EME68331.1 - 0.00027 20.8 0.0 0.0007 19.5 0.0 1.7 1 0 0 1 1 1 1 GHKL domain Med16 PF11635.8 EME68331.1 - 0.015 13.3 0.6 0.019 12.9 0.6 1.1 1 0 0 1 1 1 0 Mediator complex subunit 16 DUF1043 PF06295.12 EME68331.1 - 0.15 12.1 0.1 0.31 11.1 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1043) HTH_Tnp_1 PF01527.20 EME68332.1 - 3.9e-15 55.9 1.8 4.6e-15 55.7 1.8 1.1 1 0 0 1 1 1 1 Transposase HTH_23 PF13384.6 EME68332.1 - 1.2e-05 25.0 1.0 1.4e-05 24.7 0.1 1.7 2 0 0 2 2 2 1 Homeodomain-like domain bZIP_2 PF07716.15 EME68332.1 - 0.0039 17.3 0.5 0.0085 16.2 0.5 1.5 1 0 0 1 1 1 1 Basic region leucine zipper HTH_Tnp_IS630 PF01710.16 EME68332.1 - 0.0069 16.4 0.4 0.0085 16.1 0.4 1.1 1 0 0 1 1 1 1 Transposase HTH_Tnp_1_2 PF13022.6 EME68332.1 - 0.014 15.5 0.1 0.015 15.4 0.1 1.3 1 1 0 1 1 1 0 Helix-turn-helix of insertion element transposase HTH_29 PF13551.6 EME68332.1 - 0.015 15.3 0.4 0.029 14.4 0.4 1.6 1 1 0 1 1 1 0 Winged helix-turn helix HTH_28 PF13518.6 EME68332.1 - 0.027 14.6 0.2 0.073 13.2 0.2 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_22 PF13309.6 EME68332.1 - 0.037 14.1 0.1 0.093 12.8 0.1 1.6 1 0 0 1 1 1 0 HTH domain HTH_7 PF02796.15 EME68332.1 - 0.057 13.5 0.0 0.12 12.5 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase DivIC PF04977.15 EME68332.1 - 0.22 11.3 4.5 0.16 11.8 3.1 1.6 1 1 0 1 1 1 0 Septum formation initiator DDE_Tnp_IS1595 PF12762.7 EME68333.1 - 6.7e-31 107.4 0.0 8e-31 107.1 0.0 1.1 1 0 0 1 1 1 1 ISXO2-like transposase domain MMACHC PF16690.5 EME68333.1 - 0.066 12.8 0.0 0.085 12.5 0.0 1.1 1 0 0 1 1 1 0 Methylmalonic aciduria and homocystinuria type C family AbiEii PF08843.11 EME68334.1 - 1.3e-34 120.2 0.0 1.8e-34 119.8 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase AbiEii toxin, Type IV TA system UPF0180 PF03698.13 EME68334.1 - 0.0024 18.0 0.0 0.0059 16.8 0.0 1.6 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0180) Crp PF00325.20 EME68334.1 - 0.15 11.7 0.4 2.4 7.9 0.1 2.5 2 0 0 2 2 2 0 Bacterial regulatory proteins, crp family Xin PF08043.12 EME68334.1 - 0.42 10.3 1.6 0.91 9.2 1.6 1.6 1 0 0 1 1 1 0 Xin repeat AbiEi_3 PF11459.8 EME68335.1 - 1.5e-30 106.0 0.0 2.5e-30 105.3 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator, AbiEi antitoxin, Type IV TA system AbiEi_3_N PF17194.4 EME68335.1 - 1.1e-22 79.8 0.2 2.7e-22 78.6 0.2 1.7 1 0 0 1 1 1 1 Transcriptional regulator, AbiEi antitoxin N-terminal domain AbiEi_4 PF13338.6 EME68335.1 - 0.0002 21.5 0.1 0.0005 20.2 0.1 1.7 1 0 0 1 1 1 1 Transcriptional regulator, AbiEi antitoxin AbiEi_1 PF09407.10 EME68335.1 - 0.0057 17.0 0.0 0.009 16.3 0.0 1.3 1 0 0 1 1 1 1 AbiEi antitoxin C-terminal domain Gp49 PF05973.14 EME68336.1 - 5.3e-26 90.6 0.1 6.2e-26 90.4 0.1 1.0 1 0 0 1 1 1 1 Phage derived protein Gp49-like (DUF891) HTH_3 PF01381.22 EME68337.1 - 3.2e-12 46.3 0.5 4.7e-12 45.8 0.5 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 EME68337.1 - 1.9e-11 44.1 5.7 2.5e-11 43.8 5.7 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.6 EME68337.1 - 2.7e-07 30.5 0.1 3.3e-07 30.2 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 EME68337.1 - 1.6e-06 28.0 0.0 2.5e-06 27.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 EME68337.1 - 0.00022 21.0 0.3 0.0003 20.6 0.3 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.6 EME68337.1 - 0.0012 18.6 0.2 0.0022 17.7 0.1 1.5 1 1 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 EME68337.1 - 0.0035 16.8 0.3 0.0057 16.1 0.3 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 MqsA_antitoxin PF15731.5 EME68337.1 - 0.016 15.3 0.0 0.018 15.1 0.0 1.1 1 0 0 1 1 1 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA DUF3071 PF11268.8 EME68337.1 - 0.025 14.7 0.1 0.031 14.4 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3071) HTH_23 PF13384.6 EME68337.1 - 0.045 13.6 0.1 0.081 12.7 0.1 1.4 1 0 0 1 1 1 0 Homeodomain-like domain Pou PF00157.17 EME68337.1 - 0.047 13.7 0.2 0.075 13.0 0.2 1.4 1 1 0 1 1 1 0 Pou domain - N-terminal to homeobox domain HTH_24 PF13412.6 EME68337.1 - 0.098 12.2 0.1 0.16 11.6 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_26 PF13443.6 EME68337.1 - 0.12 12.8 0.1 0.18 12.3 0.1 1.4 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain FUR PF01475.19 EME68338.1 - 2.6e-36 124.4 0.2 2.9e-36 124.2 0.2 1.0 1 0 0 1 1 1 1 Ferric uptake regulator family RepL PF05732.11 EME68338.1 - 0.00049 19.6 0.0 0.91 8.9 0.0 2.1 2 0 0 2 2 2 2 Firmicute plasmid replication protein (RepL) HTH_23 PF13384.6 EME68338.1 - 0.033 14.0 0.3 0.11 12.3 0.1 2.0 2 0 0 2 2 2 0 Homeodomain-like domain HTH_29 PF13551.6 EME68338.1 - 0.064 13.3 0.0 0.13 12.3 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn helix HTH_20 PF12840.7 EME68338.1 - 0.1 12.7 0.0 0.2 11.7 0.0 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain YfmQ PF10787.9 EME68338.1 - 0.17 11.7 0.0 0.19 11.5 0.0 1.1 1 0 0 1 1 1 0 Uncharacterised protein from bacillus cereus group Response_reg PF00072.24 EME68339.1 - 7.8e-25 87.2 0.1 8.8e-25 87.1 0.1 1.0 1 0 0 1 1 1 1 Response regulator receiver domain ATP-cone PF03477.16 EME68340.1 - 3.1e-18 66.1 0.2 3.5e-18 65.9 0.2 1.0 1 0 0 1 1 1 1 ATP cone domain PBC PF03792.13 EME68340.1 - 0.044 13.5 0.1 0.058 13.2 0.1 1.1 1 0 0 1 1 1 0 PBC domain UXS1_N PF11803.8 EME68340.1 - 0.083 13.3 0.0 0.13 12.7 0.0 1.3 1 0 0 1 1 1 0 UDP-glucuronate decarboxylase N-terminal GGDEF PF00990.21 EME68341.1 - 2.6e-43 147.5 0.0 9.4e-42 142.5 0.0 2.2 2 0 0 2 2 2 1 Diguanylate cyclase, GGDEF domain PAS_7 PF12860.7 EME68341.1 - 4.4e-33 113.9 0.0 1.3e-32 112.4 0.0 1.8 1 0 0 1 1 1 1 PAS fold Hemerythrin PF01814.23 EME68341.1 - 6.9e-07 29.9 0.1 6.9e-07 29.9 0.1 2.4 2 0 0 2 2 2 1 Hemerythrin HHE cation binding domain PAS_4 PF08448.10 EME68341.1 - 0.0018 18.5 0.1 0.01 16.1 0.1 2.2 1 1 0 1 1 1 1 PAS fold MLTR_LBD PF17765.1 EME68341.1 - 0.0059 16.7 2.3 0.12 12.4 0.0 2.4 2 0 0 2 2 2 1 MmyB-like transcription regulator ligand binding domain PAS PF00989.25 EME68341.1 - 0.13 12.3 0.0 1.4 8.9 0.0 2.4 2 0 0 2 2 2 0 PAS fold HhH-GPD PF00730.25 EME68342.1 - 5.4e-19 68.6 0.0 7.2e-19 68.2 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 EME68342.1 - 2.1e-08 33.6 0.0 7e-08 32.0 0.0 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.9 EME68342.1 - 4e-06 27.0 5.2 4e-06 27.0 5.2 2.1 2 0 0 2 2 2 1 Iron-sulfur binding domain of endonuclease III Inositol_P PF00459.25 EME68343.1 - 8.1e-47 160.0 0.0 9.6e-47 159.8 0.0 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.20 EME68343.1 - 0.19 11.2 0.0 0.28 10.6 0.0 1.2 1 0 0 1 1 1 0 Fructose-1-6-bisphosphatase, N-terminal domain CTP_transf_3 PF02348.19 EME68344.1 - 9.6e-41 140.1 0.0 1.2e-40 139.8 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase NTP_transf_3 PF12804.7 EME68344.1 - 9.3e-12 45.6 1.8 1.3e-11 45.1 1.8 1.3 1 1 0 1 1 1 1 MobA-like NTP transferase domain LAL_C2 PF18603.1 EME68344.1 - 0.0021 18.2 0.2 1.2 9.4 0.0 3.1 3 0 0 3 3 3 2 L-amino acid ligase C-terminal domain 2 DUF2064 PF09837.9 EME68344.1 - 0.009 15.8 0.0 0.017 14.9 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2064) PDT PF00800.18 EME68345.1 - 1.2e-50 171.9 0.0 1.5e-50 171.6 0.0 1.1 1 0 0 1 1 1 1 Prephenate dehydratase Cytochrom_D1 PF02239.16 EME68346.1 - 4.2e-158 525.7 0.5 5e-158 525.4 0.5 1.0 1 0 0 1 1 1 1 Cytochrome D1 heme domain Cytochrome_CBB3 PF13442.6 EME68346.1 - 1.5e-12 47.7 0.0 3.7e-12 46.4 0.0 1.8 1 0 0 1 1 1 1 Cytochrome C oxidase, cbb3-type, subunit III Cytochrom_C PF00034.21 EME68346.1 - 1.7e-05 25.9 0.1 0.00012 23.2 0.1 2.3 1 1 0 1 1 1 1 Cytochrome c Cytochrom_C550 PF14495.6 EME68346.1 - 0.057 13.1 0.0 1.7 8.4 0.1 2.3 1 1 0 2 2 2 0 Cytochrome c-550 domain SH3_6 PF12913.7 EME68346.1 - 0.075 12.6 0.0 0.16 11.6 0.0 1.5 1 0 0 1 1 1 0 SH3 domain (SH3b1 type) MCPsignal PF00015.21 EME68347.1 - 4.8e-28 98.1 28.8 4.8e-28 98.1 28.8 4.2 1 1 2 3 3 3 1 Methyl-accepting chemotaxis protein (MCP) signalling domain 4HB_MCP_1 PF12729.7 EME68347.1 - 4e-12 46.1 0.0 4e-12 46.1 0.0 3.2 3 0 0 3 3 3 1 Four helix bundle sensory module for signal transduction HAMP PF00672.25 EME68347.1 - 7.1e-09 35.9 0.0 7.1e-09 35.9 0.0 4.4 5 0 0 5 5 5 1 HAMP domain AAA_13 PF13166.6 EME68347.1 - 0.0066 15.1 4.8 0.012 14.3 4.8 1.3 1 0 0 1 1 1 1 AAA domain DUF948 PF06103.11 EME68347.1 - 0.0088 16.3 18.0 0.64 10.3 0.6 5.1 1 1 4 5 5 5 3 Bacterial protein of unknown function (DUF948) Syntaxin-6_N PF09177.11 EME68347.1 - 0.011 16.2 1.2 0.57 10.8 0.1 2.7 2 0 0 2 2 2 0 Syntaxin 6, N-terminal DUF1664 PF07889.12 EME68347.1 - 0.021 14.9 7.1 0.17 11.9 0.4 3.5 3 1 2 5 5 5 0 Protein of unknown function (DUF1664) Baculo_PEP_C PF04513.12 EME68347.1 - 0.043 13.8 12.3 2.6 8.1 11.1 2.9 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF148 PF02520.17 EME68347.1 - 0.058 13.5 6.3 4.7 7.4 0.1 3.3 3 0 0 3 3 3 0 Domain of unknown function DUF148 BLOC1_2 PF10046.9 EME68347.1 - 0.24 11.7 1.2 7.6 6.9 0.2 3.0 2 1 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF1345 PF07077.11 EME68347.1 - 1.3 8.7 6.2 0.21 11.3 1.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1345) Laminin_II PF06009.12 EME68347.1 - 2.2 8.3 18.8 0.11 12.5 1.1 3.6 3 1 1 4 4 4 0 Laminin Domain II MIP-T3_C PF17749.1 EME68347.1 - 4.8 7.1 6.7 4.2 7.3 0.3 3.6 2 2 1 3 3 3 0 Microtubule-binding protein MIP-T3 C-terminal region TetR_C_7 PF14246.6 EME68348.1 - 4.1e-24 84.9 0.7 7.2e-24 84.1 0.7 1.4 1 0 0 1 1 1 1 AefR-like transcriptional repressor, C-terminal domain TetR_N PF00440.23 EME68348.1 - 5.6e-20 70.9 1.8 1.1e-19 69.9 1.8 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_11 PF16859.5 EME68348.1 - 1.5e-09 38.2 3.2 1.5e-09 38.2 3.2 1.9 2 1 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain LacI PF00356.21 EME68348.1 - 0.047 13.5 0.0 0.12 12.2 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory proteins, lacI family HTH_22 PF13309.6 EME68348.1 - 0.051 13.7 0.1 0.11 12.6 0.1 1.6 1 0 0 1 1 1 0 HTH domain HTH_Tnp_1_2 PF13022.6 EME68348.1 - 0.14 12.3 0.0 0.4 10.9 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix of insertion element transposase UvrD-helicase PF00580.21 EME68349.1 - 2.9e-49 168.3 0.0 3.3e-48 164.8 0.0 2.0 1 1 0 1 1 1 1 UvrD/REP helicase N-terminal domain AAA_19 PF13245.6 EME68349.1 - 1.9e-18 67.2 0.0 9e-18 65.0 0.0 2.0 1 1 0 1 1 1 1 AAA domain UvrD_C PF13361.6 EME68349.1 - 1.8e-17 63.8 0.0 1.3e-15 57.7 0.0 2.2 1 1 0 1 1 1 1 UvrD-like helicase C-terminal domain UvrD_C_2 PF13538.6 EME68349.1 - 2.9e-12 46.2 0.9 2e-05 24.3 0.7 2.6 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain PDDEXK_1 PF12705.7 EME68349.1 - 2.7e-08 34.1 0.0 8e-08 32.5 0.0 1.7 1 1 0 1 1 1 1 PD-(D/E)XK nuclease superfamily AAA_30 PF13604.6 EME68349.1 - 0.013 15.2 1.1 0.04 13.6 0.3 2.2 2 0 0 2 2 2 0 AAA domain Viral_helicase1 PF01443.18 EME68349.1 - 0.12 12.1 0.7 51 3.5 0.1 3.7 4 0 0 4 4 4 0 Viral (Superfamily 1) RNA helicase AAA_3 PF07726.11 EME68350.1 - 3e-57 192.1 0.0 4.5e-57 191.5 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 EME68350.1 - 3e-11 43.0 6.0 8.5e-11 41.5 6.0 1.8 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 EME68350.1 - 1.1e-09 38.4 0.0 3.3e-09 36.8 0.0 1.9 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) MCM PF00493.23 EME68350.1 - 0.0048 16.0 0.0 0.74 8.9 0.0 2.1 2 0 0 2 2 2 2 MCM P-loop domain Sigma54_activat PF00158.26 EME68350.1 - 0.0059 16.3 0.0 0.011 15.5 0.0 1.3 1 0 0 1 1 1 1 Sigma-54 interaction domain RuvB_N PF05496.12 EME68350.1 - 0.031 14.0 0.0 2.9 7.6 0.1 2.4 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain Mg_chelatase PF01078.21 EME68350.1 - 0.11 11.9 0.1 2.5 7.4 0.0 2.2 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI DUF1285 PF06938.11 EME68351.1 - 9.6e-55 184.6 0.0 1.1e-54 184.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1285) NUDIX PF00293.28 EME68352.1 - 2e-14 53.7 0.0 3.4e-14 53.0 0.0 1.4 1 0 0 1 1 1 1 NUDIX domain PolyA_pol PF01743.20 EME68353.1 - 1.5e-28 99.8 0.0 2.5e-28 99.0 0.0 1.4 1 0 0 1 1 1 1 Poly A polymerase head domain PolyA_pol_RNAbd PF12627.7 EME68353.1 - 4.6e-12 45.5 0.0 5.5e-11 42.1 0.0 2.6 3 0 0 3 3 3 1 Probable RNA and SrmB- binding site of polymerase A PmbA_TldD PF01523.16 EME68355.1 - 1.5e-66 225.1 0.2 3.5e-66 223.9 0.0 1.7 2 0 0 2 2 2 1 Putative modulator of DNA gyrase DUF3422 PF11902.8 EME68356.1 - 1.2e-166 555.0 0.0 1.4e-166 554.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3422) ABC_tran_CTD PF16326.5 EME68356.1 - 0.082 13.2 0.4 0.082 13.2 0.4 2.1 3 0 0 3 3 3 0 ABC transporter C-terminal domain EAL PF00563.20 EME68357.1 - 3e-70 236.4 0.0 5.7e-70 235.5 0.0 1.5 1 0 0 1 1 1 1 EAL domain GGDEF PF00990.21 EME68357.1 - 1.1e-51 174.8 1.0 2e-51 173.9 0.2 2.0 2 0 0 2 2 2 1 Diguanylate cyclase, GGDEF domain PAS_4 PF08448.10 EME68357.1 - 3.1e-27 95.0 0.0 4.2e-13 49.5 0.0 4.6 3 1 0 3 3 3 3 PAS fold PAS PF00989.25 EME68357.1 - 3e-19 69.1 0.0 1.5e-07 31.4 0.0 3.7 3 0 0 3 3 3 3 PAS fold PAS_9 PF13426.7 EME68357.1 - 3.5e-17 62.5 0.0 1.6e-07 31.5 0.0 3.7 3 0 0 3 3 3 3 PAS domain PAS_8 PF13188.7 EME68357.1 - 7.9e-10 38.5 0.5 0.00027 20.9 0.0 4.0 4 0 0 4 4 4 2 PAS domain PAS_7 PF12860.7 EME68357.1 - 1.1e-06 28.8 0.0 0.033 14.4 0.0 4.1 3 1 1 4 4 4 1 PAS fold PAS_3 PF08447.12 EME68357.1 - 0.18 12.1 0.0 0.87 9.9 0.0 2.2 2 0 0 2 2 2 0 PAS fold CheX PF13690.6 EME68358.1 - 1.3e-11 44.5 0.0 3.7e-05 23.8 0.0 3.0 2 1 0 3 3 3 2 Chemotaxis phosphatase CheX CheC PF04509.12 EME68358.1 - 1.6e-05 24.7 0.4 7.3e-05 22.6 0.0 2.2 2 0 0 2 2 2 1 CheC-like family Response_reg PF00072.24 EME68359.1 - 1.4e-19 70.4 0.0 1.5e-19 70.2 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain TerB PF05099.13 EME68360.1 - 3.5e-06 27.0 0.8 3.3e-05 23.9 0.1 2.1 1 1 1 2 2 2 2 Tellurite resistance protein TerB Phage_integrase PF00589.22 EME68361.1 - 2e-07 30.9 0.0 3.2e-07 30.3 0.0 1.3 1 0 0 1 1 1 1 Phage integrase family Peptidase_S49 PF01343.18 EME68363.1 - 9.7e-48 162.0 0.0 3.8e-44 150.3 0.0 2.1 2 0 0 2 2 2 2 Peptidase family S49 CLP_protease PF00574.23 EME68363.1 - 4.9e-06 26.5 0.1 0.0041 17.0 0.0 2.7 3 0 0 3 3 3 2 Clp protease SDH_sah PF01972.16 EME68363.1 - 0.0019 17.3 0.1 0.0027 16.8 0.1 1.1 1 0 0 1 1 1 1 Serine dehydrogenase proteinase Amidohydro_2 PF04909.14 EME68363.1 - 0.0022 17.8 0.1 0.0032 17.3 0.1 1.2 1 0 0 1 1 1 1 Amidohydrolase MdcE PF06833.11 EME68363.1 - 0.096 12.2 1.2 0.39 10.2 1.1 1.8 1 1 0 1 1 1 0 Malonate decarboxylase gamma subunit (MdcE) Ligase_CoA PF00549.19 EME68363.1 - 0.1 12.4 0.0 0.17 11.7 0.0 1.3 1 0 0 1 1 1 0 CoA-ligase ECH_1 PF00378.20 EME68363.1 - 0.32 10.3 1.2 1.1 8.6 0.1 2.3 3 0 0 3 3 3 0 Enoyl-CoA hydratase/isomerase adh_short_C2 PF13561.6 EME68364.1 - 3.5e-48 164.2 0.1 4.1e-48 164.0 0.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 EME68364.1 - 1.1e-46 158.8 0.0 1.4e-46 158.5 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase Epimerase PF01370.21 EME68364.1 - 0.0002 20.9 0.0 0.0012 18.3 0.0 1.9 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family KR PF08659.10 EME68364.1 - 0.0018 18.2 0.2 0.0087 16.0 0.1 2.0 1 1 1 2 2 2 1 KR domain Glyco_trans_4_4 PF13579.6 EME68364.1 - 0.073 13.5 2.9 0.8 10.1 0.1 2.5 2 1 0 2 2 2 0 Glycosyl transferase 4-like domain RmlD_sub_bind PF04321.17 EME68364.1 - 0.091 11.8 0.0 0.14 11.2 0.0 1.3 1 0 0 1 1 1 0 RmlD substrate binding domain DUF1776 PF08643.10 EME68364.1 - 0.15 11.4 0.0 0.18 11.1 0.0 1.1 1 0 0 1 1 1 0 Fungal family of unknown function (DUF1776) PilZ PF07238.14 EME68365.1 - 0.004 17.4 0.1 0.006 16.9 0.1 1.3 1 0 0 1 1 1 1 PilZ domain Peptidase_M24 PF00557.24 EME68368.1 - 1.7e-53 181.4 0.2 2e-53 181.2 0.2 1.0 1 0 0 1 1 1 1 Metallopeptidase family M24 SfsA PF03749.13 EME68369.1 - 4.7e-49 165.8 0.0 6e-49 165.5 0.0 1.1 1 0 0 1 1 1 1 Sugar fermentation stimulation protein RE domain SfsA_N PF17746.1 EME68369.1 - 4.5e-23 81.2 0.0 8.8e-23 80.2 0.0 1.5 1 0 0 1 1 1 1 SfsA N-terminal OB domain DUF3322 PF11795.8 EME68369.1 - 0.16 12.0 0.0 0.22 11.5 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria N-term (DUF3322) Methyltransf_11 PF08241.12 EME68370.1 - 2.1e-19 70.0 0.0 3.6e-19 69.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 EME68370.1 - 1.9e-15 57.1 0.0 2.8e-15 56.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 EME68370.1 - 3.7e-14 53.2 0.0 6.8e-14 52.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 EME68370.1 - 1.4e-11 45.0 0.0 3.2e-11 43.9 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 EME68370.1 - 2.9e-06 27.2 0.0 1.2e-05 25.1 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 EME68370.1 - 3.8e-06 26.4 0.0 2.1e-05 24.0 0.0 2.0 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_8 PF05148.15 EME68370.1 - 0.0006 19.7 0.0 0.00098 19.0 0.0 1.3 1 0 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_29 PF03141.16 EME68370.1 - 0.0013 17.4 0.0 0.0017 17.0 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_7 PF03492.15 EME68370.1 - 0.23 10.7 0.0 0.49 9.6 0.0 1.5 2 0 0 2 2 2 0 SAM dependent carboxyl methyltransferase Pribosyltran PF00156.27 EME68371.1 - 1.5e-07 31.1 0.1 2.2e-07 30.5 0.1 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 EME68371.1 - 0.0027 17.2 0.0 0.0044 16.5 0.0 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase FAM76 PF16046.5 EME68371.1 - 2.6 7.3 3.8 3.6 6.8 3.8 1.1 1 0 0 1 1 1 0 FAM76 protein NMD3 PF04981.13 EME68371.1 - 4.6 6.6 4.6 25 4.2 4.8 1.7 1 1 1 2 2 2 0 NMD3 family DZR PF12773.7 EME68371.1 - 7.1 6.7 10.0 48 4.1 10.0 2.1 1 1 0 1 1 1 0 Double zinc ribbon Glutaredoxin PF00462.24 EME68372.1 - 1.1e-22 80.0 0.1 1.3e-22 79.7 0.1 1.1 1 0 0 1 1 1 1 Glutaredoxin Thioredoxin_3 PF13192.6 EME68372.1 - 0.0024 17.9 0.2 0.0047 17.0 0.1 1.4 1 1 0 1 1 1 1 Thioredoxin domain DUF836 PF05768.14 EME68372.1 - 0.013 15.9 0.0 0.018 15.5 0.0 1.3 1 1 0 1 1 1 0 Glutaredoxin-like domain (DUF836) SH3BGR PF04908.15 EME68372.1 - 0.015 15.4 0.0 0.02 15.0 0.0 1.3 1 0 0 1 1 1 0 SH3-binding, glutamic acid-rich protein GST_N_3 PF13417.6 EME68372.1 - 0.035 14.5 0.0 0.04 14.3 0.0 1.1 1 0 0 1 1 1 0 Glutathione S-transferase, N-terminal domain CN_hydrolase PF00795.22 EME68373.1 - 7.9e-47 159.8 0.0 8.8e-47 159.6 0.0 1.0 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase Methyltransf_23 PF13489.6 EME68374.1 - 2.1e-08 34.2 0.0 4.8e-08 33.0 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 EME68374.1 - 2.6e-07 31.3 0.0 4.7e-07 30.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 EME68374.1 - 1.6e-06 28.7 0.0 3.1e-06 27.7 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain TehB PF03848.14 EME68374.1 - 0.011 15.2 0.0 0.016 14.6 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB Methyltransf_31 PF13847.6 EME68374.1 - 0.019 14.7 0.0 0.075 12.8 0.0 1.9 1 1 0 1 1 1 0 Methyltransferase domain MetW PF07021.12 EME68374.1 - 0.021 14.4 0.0 0.031 13.9 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW DUF1178 PF06676.11 EME68375.1 - 2.4e-46 157.8 0.2 8e-46 156.1 0.2 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF1178) Zn-ribbon_8 PF09723.10 EME68375.1 - 0.0052 16.9 0.4 0.016 15.3 0.4 1.8 1 1 0 1 1 1 1 Zinc ribbon domain SH3_16 PF18348.1 EME68375.1 - 0.16 11.8 0.5 1.2 8.9 0.1 2.3 2 0 0 2 2 2 0 Bacterial dipeptidyl-peptidase Sh3 domain Methyltransf_23 PF13489.6 EME68376.1 - 2.5e-20 72.9 0.0 3e-20 72.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 EME68376.1 - 1.7e-19 70.2 0.1 3.8e-19 69.1 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 EME68376.1 - 1e-15 58.2 0.0 1.8e-15 57.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 EME68376.1 - 5.8e-14 52.1 0.0 6.7e-14 51.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 EME68376.1 - 5.4e-13 49.5 0.0 8.2e-13 48.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 EME68376.1 - 2.8e-08 33.4 0.0 3.4e-08 33.1 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase NodS PF05401.11 EME68376.1 - 1.4e-06 28.1 0.0 2e-06 27.6 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) MTS PF05175.14 EME68376.1 - 0.00022 20.8 0.0 0.00038 20.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 EME68376.1 - 0.0005 19.6 0.0 0.00069 19.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_32 PF13679.6 EME68376.1 - 0.0051 16.8 0.0 0.0073 16.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_9 PF08003.11 EME68376.1 - 0.0054 15.7 0.0 0.0072 15.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Ubie_methyltran PF01209.18 EME68376.1 - 0.014 14.7 0.0 0.021 14.1 0.0 1.3 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family TehB PF03848.14 EME68376.1 - 0.048 13.1 0.0 0.066 12.6 0.0 1.1 1 0 0 1 1 1 0 Tellurite resistance protein TehB GidB PF02527.15 EME68376.1 - 0.11 11.9 0.0 0.15 11.4 0.0 1.2 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G AA_kinase PF00696.28 EME68377.1 - 6e-46 157.0 2.4 1.1e-45 156.2 2.4 1.4 1 0 0 1 1 1 1 Amino acid kinase family ACT PF01842.25 EME68377.1 - 4.9e-20 71.0 3.9 1.1e-13 50.7 0.2 3.4 4 0 0 4 4 4 2 ACT domain ACT_7 PF13840.6 EME68377.1 - 2.2e-19 69.0 3.1 1.2e-14 53.8 0.4 2.7 3 0 0 3 3 3 2 ACT domain ACT_4 PF13291.6 EME68377.1 - 0.63 10.7 4.0 5.1 7.8 0.0 2.9 3 0 0 3 3 3 0 ACT domain NMO PF03060.15 EME68378.1 - 8.3e-50 170.0 0.8 5.8e-33 114.7 0.8 2.0 1 1 1 2 2 2 2 Nitronate monooxygenase ThiG PF05690.14 EME68378.1 - 1e-06 28.3 2.1 1.5e-06 27.7 2.1 1.3 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG DHO_dh PF01180.21 EME68378.1 - 5.3e-05 22.6 0.1 8e-05 22.0 0.1 1.2 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase FMN_dh PF01070.18 EME68378.1 - 0.00012 21.2 2.6 0.00012 21.2 2.6 2.1 1 1 1 2 2 2 1 FMN-dependent dehydrogenase IMPDH PF00478.25 EME68378.1 - 0.00023 20.3 0.0 0.0013 17.8 0.0 1.9 1 1 1 2 2 2 2 IMP dehydrogenase / GMP reductase domain His_biosynth PF00977.21 EME68378.1 - 0.00053 19.5 0.3 0.022 14.2 0.0 2.2 1 1 1 2 2 2 1 Histidine biosynthesis protein Glu_synthase PF01645.17 EME68378.1 - 0.19 10.8 2.1 1.9 7.5 2.0 2.0 1 1 0 1 1 1 0 Conserved region in glutamate synthase PEP-utilizers_C PF02896.18 EME68379.1 - 3.7e-88 295.4 0.0 5.9e-88 294.8 0.0 1.3 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilisers_N PF05524.13 EME68379.1 - 3.8e-24 85.1 0.2 1.1e-23 83.6 0.1 1.9 2 0 0 2 2 2 1 PEP-utilising enzyme, N-terminal PEP-utilizers PF00391.23 EME68379.1 - 3.4e-17 61.9 0.1 1.3e-16 60.1 0.0 2.1 2 0 0 2 2 2 1 PEP-utilising enzyme, mobile domain GAF_2 PF13185.6 EME68379.1 - 7.6e-15 55.4 0.1 2.2e-14 53.9 0.1 1.9 1 0 0 1 1 1 1 GAF domain GAF PF01590.26 EME68379.1 - 1.1e-11 45.5 0.9 2.1e-11 44.6 0.2 1.8 2 0 0 2 2 2 1 GAF domain GAF_3 PF13492.6 EME68379.1 - 0.00062 20.1 0.1 0.0015 18.9 0.1 1.7 1 0 0 1 1 1 1 GAF domain SpoVT_C PF15714.5 EME68379.1 - 0.033 14.2 0.0 0.063 13.3 0.0 1.4 1 0 0 1 1 1 0 Stage V sporulation protein T C-terminal, transcription factor HTH_25 PF13413.6 EME68380.1 - 1.1e-20 73.2 0.0 2e-20 72.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain DUF4115 PF13464.6 EME68380.1 - 5.6e-18 64.9 0.0 1e-17 64.1 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4115) HTH_19 PF12844.7 EME68380.1 - 5e-05 23.2 0.0 8.3e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 EME68380.1 - 6.8e-05 23.1 2.3 8.3e-05 22.9 0.7 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain GcpE PF04551.14 EME68381.1 - 1.1e-126 422.6 0.0 1.3e-126 422.5 0.0 1.0 1 0 0 1 1 1 1 GcpE protein AP_endonuc_2 PF01261.24 EME68381.1 - 0.016 14.7 0.0 3.3 7.1 0.1 2.8 2 1 0 2 2 2 0 Xylose isomerase-like TIM barrel tRNA-synt_His PF13393.6 EME68382.1 - 3e-47 161.4 0.0 4e-47 161.0 0.0 1.2 1 0 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.25 EME68382.1 - 1.3e-19 70.8 0.0 2.4e-19 70.0 0.0 1.4 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 EME68382.1 - 5.8e-13 48.8 0.0 1.1e-12 47.9 0.0 1.5 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2d PF01409.20 EME68382.1 - 3.6e-07 29.9 0.1 4.8e-05 23.0 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) GlutR_N PF05201.15 EME68383.1 - 6.4e-36 123.3 0.0 1.3e-35 122.3 0.0 1.5 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, N-terminal domain Shikimate_DH PF01488.20 EME68383.1 - 1.2e-29 103.1 0.0 2.1e-29 102.4 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GlutR_dimer PF00745.20 EME68383.1 - 5.9e-11 42.7 2.8 3.3e-10 40.3 2.8 2.2 1 1 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain F420_oxidored PF03807.17 EME68383.1 - 2.1e-07 31.4 0.2 2.4e-06 28.1 0.1 2.5 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 EME68383.1 - 5.9e-05 23.3 0.0 0.00016 21.9 0.0 1.7 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_7 PF13241.6 EME68383.1 - 0.00013 22.4 0.3 0.00049 20.5 0.0 2.1 2 0 0 2 2 2 1 Putative NAD(P)-binding NAD_binding_10 PF13460.6 EME68383.1 - 0.00019 21.4 2.5 0.00025 21.0 1.6 1.7 1 1 0 1 1 1 1 NAD(P)H-binding GFO_IDH_MocA PF01408.22 EME68383.1 - 0.00022 22.0 0.0 0.00055 20.8 0.0 1.7 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold OCD_Mu_crystall PF02423.15 EME68383.1 - 0.0011 18.0 0.1 0.0019 17.2 0.1 1.3 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family ThiF PF00899.21 EME68383.1 - 0.031 13.6 2.2 0.15 11.3 0.4 2.3 1 1 1 2 2 2 0 ThiF family 2-Hacid_dh_C PF02826.19 EME68383.1 - 0.055 12.8 0.0 0.11 11.9 0.0 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.21 EME68383.1 - 0.095 12.8 0.0 0.19 11.8 0.0 1.4 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Methyltransf_25 PF13649.6 EME68383.1 - 0.16 12.7 1.4 0.38 11.5 0.0 2.4 3 0 0 3 3 3 0 Methyltransferase domain ParE_toxin PF05016.15 EME68384.1 - 2.9e-19 69.5 0.4 3.1e-19 69.4 0.4 1.0 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE PCRF PF03462.18 EME68385.1 - 3.1e-69 232.7 0.5 3.1e-69 232.7 0.5 1.5 2 0 0 2 2 2 1 PCRF domain RF-1 PF00472.20 EME68385.1 - 1.7e-39 134.3 1.3 3.7e-39 133.2 1.3 1.6 1 0 0 1 1 1 1 RF-1 domain MIR PF02815.19 EME68385.1 - 0.017 15.0 0.1 0.031 14.1 0.1 1.5 1 0 0 1 1 1 0 MIR domain Methyltransf_31 PF13847.6 EME68386.1 - 1.2e-14 54.4 0.0 3.1e-14 53.0 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain PrmC_N PF17827.1 EME68386.1 - 5.9e-13 49.2 0.2 2e-12 47.5 0.1 1.9 2 0 0 2 2 2 1 PrmC N-terminal domain MTS PF05175.14 EME68386.1 - 1.3e-11 44.3 0.0 2.5e-11 43.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.6 EME68386.1 - 7.1e-09 36.3 0.0 1.4e-07 32.1 0.0 2.6 2 0 0 2 2 2 1 Methyltransferase domain PrmA PF06325.13 EME68386.1 - 1.9e-06 27.5 0.0 4.4e-06 26.3 0.0 1.5 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_23 PF13489.6 EME68386.1 - 2.2e-06 27.6 0.0 2.3e-05 24.3 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 EME68386.1 - 4.1e-05 24.1 0.1 0.0016 19.0 0.0 2.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 EME68386.1 - 8.5e-05 23.2 0.0 0.001 19.7 0.0 2.5 2 0 0 2 2 2 1 Methyltransferase domain Cons_hypoth95 PF03602.15 EME68386.1 - 0.00039 20.1 0.0 0.0006 19.5 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 UPF0020 PF01170.18 EME68386.1 - 0.0018 18.0 0.0 0.0032 17.2 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_18 PF12847.7 EME68386.1 - 0.057 13.3 0.0 0.097 12.6 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Eco57I PF07669.11 EME68386.1 - 0.27 11.7 0.2 0.39 11.2 0.2 1.2 1 0 0 1 1 1 0 Eco57I restriction-modification methylase DUF4167 PF13763.6 EME68387.1 - 2.5e-31 107.6 1.5 2.5e-31 107.6 1.5 1.7 1 1 1 2 2 2 1 Domain of unknown function (DUF4167) Hemerythrin PF01814.23 EME68388.1 - 1e-06 29.4 10.7 6.2e-06 26.9 10.7 1.8 1 1 0 1 1 1 1 Hemerythrin HHE cation binding domain RsmJ PF04378.13 EME68390.1 - 5.4e-86 287.8 0.0 6.4e-86 287.6 0.0 1.0 1 0 0 1 1 1 1 Ribosomal RNA large subunit methyltransferase D, RlmJ Cons_hypoth95 PF03602.15 EME68390.1 - 0.0041 16.8 0.0 0.058 13.0 0.0 2.1 2 0 0 2 2 2 1 Conserved hypothetical protein 95 PAS_3 PF08447.12 EME68391.1 - 1.4e-14 54.1 0.0 2.2e-14 53.5 0.0 1.3 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 EME68391.1 - 5.6e-12 45.8 0.0 9.2e-12 45.1 0.0 1.3 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 EME68391.1 - 2.9e-09 36.9 0.0 4.7e-09 36.2 0.0 1.2 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.10 EME68391.1 - 6.6e-06 26.3 0.0 2e-05 24.8 0.0 1.7 1 1 0 1 1 1 1 PAS fold PAS_8 PF13188.7 EME68391.1 - 0.0011 19.0 0.0 0.0019 18.2 0.0 1.4 1 0 0 1 1 1 1 PAS domain MCPsignal PF00015.21 EME68392.1 - 1e-31 110.1 44.4 3e-30 105.3 28.0 3.9 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF1664 PF07889.12 EME68392.1 - 0.00012 22.2 14.6 0.011 15.8 1.1 3.8 2 2 1 3 3 3 2 Protein of unknown function (DUF1664) DUF948 PF06103.11 EME68392.1 - 0.0049 17.1 27.8 0.39 11.0 3.6 5.5 1 1 5 6 6 6 3 Bacterial protein of unknown function (DUF948) CALCOCO1 PF07888.11 EME68392.1 - 0.047 12.6 0.2 0.047 12.6 0.2 2.1 1 1 0 2 2 2 0 Calcium binding and coiled-coil domain (CALCOCO1) like TMPIT PF07851.13 EME68392.1 - 0.067 12.4 1.4 6.6 5.9 0.0 2.4 2 0 0 2 2 2 0 TMPIT-like protein Laminin_II PF06009.12 EME68392.1 - 0.076 13.0 20.4 0.58 10.2 2.8 4.3 1 1 4 5 5 5 0 Laminin Domain II Syntaxin-6_N PF09177.11 EME68392.1 - 0.08 13.5 6.7 0.72 10.4 0.3 3.6 1 1 2 3 3 3 0 Syntaxin 6, N-terminal LXG PF04740.12 EME68392.1 - 0.084 12.6 12.1 0.84 9.3 1.8 2.9 1 1 0 2 2 2 0 LXG domain of WXG superfamily HAP1_N PF04849.13 EME68392.1 - 0.13 11.4 1.5 8.7 5.4 0.0 2.2 2 0 0 2 2 2 0 HAP1 N-terminal conserved region ALIX_LYPXL_bnd PF13949.6 EME68392.1 - 0.14 11.4 5.7 1.7 7.8 0.2 2.5 2 1 0 2 2 2 0 ALIX V-shaped domain binding to HIV ISG65-75 PF11727.8 EME68392.1 - 0.14 11.3 16.1 0.6 9.3 1.7 2.2 2 0 0 2 2 2 0 Invariant surface glycoprotein IFT57 PF10498.9 EME68392.1 - 0.16 10.9 2.9 8.5 5.2 0.5 2.5 2 1 0 2 2 2 0 Intra-flagellar transport protein 57 Ykof PF07615.11 EME68392.1 - 0.47 11.0 2.4 5.8 7.5 0.2 3.3 2 2 1 3 3 3 0 YKOF-related Family DUF3450 PF11932.8 EME68392.1 - 0.55 9.5 16.5 0.52 9.6 1.7 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF3450) APG17 PF04108.12 EME68392.1 - 0.57 9.2 7.7 4.8 6.2 0.4 2.4 2 0 0 2 2 2 0 Autophagy protein Apg17 DUF1216 PF06746.11 EME68392.1 - 0.83 9.7 6.7 1.6 8.8 0.3 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF1216) COG2 PF06148.11 EME68392.1 - 0.85 9.7 8.0 5.7 7.0 0.3 3.7 1 1 1 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 HisKA_3 PF07730.13 EME68392.1 - 0.86 10.2 0.1 0.86 10.2 0.1 4.7 4 1 1 5 5 4 0 Histidine kinase Serine_rich PF08824.10 EME68392.1 - 0.94 9.5 6.6 22 5.0 0.1 3.1 2 1 1 3 3 3 0 Serine rich protein interaction domain Prominin PF05478.11 EME68392.1 - 1.2 7.0 5.6 5.2 4.9 0.2 2.3 1 1 0 2 2 2 0 Prominin Sec20 PF03908.13 EME68392.1 - 1.4 8.9 6.2 1.3 9.0 0.3 3.6 3 2 2 5 5 5 0 Sec20 SlyX PF04102.12 EME68392.1 - 1.6 9.4 6.5 13 6.5 0.1 3.8 2 2 1 3 3 3 0 SlyX Laminin_I PF06008.14 EME68392.1 - 1.8 8.2 23.8 2.5 7.7 3.1 3.6 1 1 2 3 3 3 0 Laminin Domain I Tropomyosin PF00261.20 EME68392.1 - 2.1 7.6 11.6 5.3 6.3 4.9 2.9 1 1 1 2 2 2 0 Tropomyosin DUF724 PF05266.14 EME68392.1 - 2.2 8.1 6.9 4.1 7.2 0.2 2.9 2 1 1 3 3 3 0 Protein of unknown function (DUF724) Fib_alpha PF08702.10 EME68392.1 - 2.4 8.4 6.2 23 5.1 0.3 3.0 2 1 1 3 3 3 0 Fibrinogen alpha/beta chain family AAA_13 PF13166.6 EME68392.1 - 5.5 5.5 12.8 16 4.0 5.0 2.0 1 1 1 2 2 2 0 AAA domain DUF148 PF02520.17 EME68392.1 - 9.6 6.4 13.5 0.9 9.7 0.6 3.4 2 1 0 3 3 3 0 Domain of unknown function DUF148 Semialdhyde_dhC PF02774.18 EME68393.1 - 2.7e-57 193.8 0.1 3.7e-57 193.4 0.1 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain Semialdhyde_dh PF01118.24 EME68393.1 - 3.4e-32 111.4 0.1 8.7e-32 110.1 0.0 1.7 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain Gp_dh_C PF02800.20 EME68393.1 - 0.00017 21.2 1.6 0.0015 18.1 0.2 2.3 2 0 0 2 2 2 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NmrA PF05368.13 EME68393.1 - 0.02 14.5 0.0 0.036 13.6 0.0 1.4 1 0 0 1 1 1 0 NmrA-like family DapB_N PF01113.20 EME68393.1 - 0.027 14.6 0.3 0.26 11.4 0.0 2.3 2 0 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus Ldh_1_N PF00056.23 EME68393.1 - 0.031 14.3 0.1 0.075 13.1 0.0 1.7 2 0 0 2 2 2 0 lactate/malate dehydrogenase, NAD binding domain DXP_reductoisom PF02670.16 EME68393.1 - 0.047 14.4 0.1 0.18 12.6 0.0 1.9 2 0 0 2 2 2 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase VPS13_mid_rpt PF16910.5 EME68393.1 - 0.054 12.9 0.0 0.093 12.1 0.0 1.3 1 0 0 1 1 1 0 Repeating coiled region of VPS13 F420_oxidored PF03807.17 EME68393.1 - 0.082 13.5 0.3 0.53 10.9 0.0 2.3 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent RAP-1 PF03085.15 EME68393.1 - 0.094 12.4 0.0 0.17 11.6 0.0 1.4 1 0 0 1 1 1 0 Rhoptry-associated protein 1 (RAP-1) NAD_binding_10 PF13460.6 EME68393.1 - 0.16 11.8 0.5 0.4 10.6 0.0 2.0 3 0 0 3 3 3 0 NAD(P)H-binding ABC_tran PF00005.27 EME68394.1 - 1.2e-25 90.6 0.0 1.6e-25 90.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_30 PF13604.6 EME68394.1 - 0.00039 20.2 0.0 0.00077 19.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 EME68394.1 - 0.0017 18.8 0.1 0.0022 18.4 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_21 PF13304.6 EME68394.1 - 0.007 16.2 0.0 0.24 11.2 0.0 2.1 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 EME68394.1 - 0.016 14.9 0.1 0.035 13.9 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain SMC_N PF02463.19 EME68394.1 - 0.032 13.7 0.1 4.2 6.8 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_10 PF12846.7 EME68394.1 - 0.034 13.1 0.0 0.053 12.4 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain RsgA_GTPase PF03193.16 EME68394.1 - 0.04 13.8 0.0 0.063 13.2 0.0 1.2 1 0 0 1 1 1 0 RsgA GTPase TrwB_AAD_bind PF10412.9 EME68394.1 - 0.062 12.2 0.0 0.094 11.6 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain T2SSE PF00437.20 EME68394.1 - 0.071 12.2 0.0 0.14 11.2 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_22 PF13401.6 EME68394.1 - 0.18 12.0 0.0 0.46 10.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain LysR_substrate PF03466.20 EME68395.1 - 1.1e-48 165.4 5.8 1.7e-48 164.8 5.8 1.2 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 EME68395.1 - 1.2e-17 63.6 1.6 1.2e-17 63.6 1.6 2.3 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family Pribosyltran_N PF13793.6 EME68396.1 - 6.4e-50 168.0 2.1 9.4e-49 164.2 0.1 2.5 2 1 0 2 2 2 1 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyl_synth PF14572.6 EME68396.1 - 8.6e-27 94.4 3.2 1.4e-26 93.7 1.1 2.1 1 1 1 2 2 2 1 Phosphoribosyl synthetase-associated domain Pribosyltran PF00156.27 EME68396.1 - 5.5e-19 68.2 3.7 2e-18 66.4 2.6 2.3 3 0 0 3 3 3 1 Phosphoribosyl transferase domain Cu-oxidase_4 PF02578.15 EME68398.1 - 4.5e-71 239.1 0.0 5e-71 239.0 0.0 1.0 1 0 0 1 1 1 1 Multi-copper polyphenol oxidoreductase laccase Methyltransf_28 PF02636.17 EME68399.1 - 2.6e-65 220.7 0.0 3.2e-65 220.4 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase LGT PF01790.18 EME68400.1 - 2.9e-74 249.3 9.0 3.3e-74 249.2 9.0 1.0 1 0 0 1 1 1 1 Prolipoprotein diacylglyceryl transferase Epimerase PF01370.21 EME68401.1 - 1e-39 136.5 0.0 1.2e-39 136.2 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 EME68401.1 - 1.3e-16 61.0 0.0 2.1e-16 60.2 0.0 1.3 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 EME68401.1 - 1e-11 44.5 0.0 9.2e-11 41.4 0.0 2.0 1 1 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 EME68401.1 - 6.7e-09 35.1 0.0 1.1e-08 34.4 0.0 1.5 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 EME68401.1 - 6.9e-05 22.1 0.0 0.031 13.4 0.3 3.3 3 1 0 3 3 3 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 EME68401.1 - 0.00024 20.4 0.3 0.12 11.5 0.0 2.2 1 1 1 2 2 2 2 Male sterility protein KR PF08659.10 EME68401.1 - 0.00041 20.3 1.3 0.0049 16.8 1.3 2.3 1 1 0 1 1 1 1 KR domain NAD_binding_3 PF03447.16 EME68401.1 - 0.011 16.3 0.0 0.021 15.5 0.0 1.4 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain adh_short PF00106.25 EME68401.1 - 0.18 11.2 0.1 0.29 10.6 0.1 1.4 1 0 0 1 1 1 0 short chain dehydrogenase Abhydrolase_1 PF00561.20 EME68402.1 - 1.9e-24 86.7 0.0 4.4e-19 69.1 0.1 2.1 2 0 0 2 2 2 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 EME68402.1 - 2.8e-13 49.7 0.0 2.5e-09 36.7 0.0 2.1 2 0 0 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_4 PF08386.10 EME68402.1 - 0.008 16.3 0.0 0.02 15.0 0.0 1.6 1 0 0 1 1 1 1 TAP-like protein Ser_hydrolase PF06821.13 EME68402.1 - 0.017 15.0 0.0 0.037 13.9 0.0 1.5 1 0 0 1 1 1 0 Serine hydrolase Esterase_phd PF10503.9 EME68402.1 - 0.024 14.1 0.8 2 7.8 0.0 2.9 2 1 1 3 3 3 0 Esterase PHB depolymerase Peptidase_S28 PF05577.12 EME68402.1 - 0.18 10.6 0.0 0.25 10.1 0.0 1.1 1 0 0 1 1 1 0 Serine carboxypeptidase S28 Queuosine_synth PF02547.15 EME68403.1 - 5.5e-125 416.8 0.0 6.1e-125 416.7 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein Glyoxalase_6 PF18029.1 EME68403.1 - 0.0055 17.5 0.9 0.011 16.5 0.9 1.6 1 0 0 1 1 1 1 Glyoxalase-like domain Hydrolase PF00702.26 EME68403.1 - 0.079 13.2 0.3 0.11 12.8 0.3 1.3 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase TGT PF01702.18 EME68404.1 - 1.4e-142 475.1 0.0 1.7e-142 474.7 0.0 1.0 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase PEMT PF04191.13 EME68405.1 - 5.1e-06 26.8 0.1 1.2e-05 25.7 0.0 1.7 2 0 0 2 2 2 1 Phospholipid methyltransferase Wzy_C_2 PF11846.8 EME68405.1 - 0.024 14.5 0.2 0.061 13.2 0.0 1.8 1 1 1 2 2 2 0 Virulence factor membrane-bound polymerase, C-terminal ICMT PF04140.14 EME68405.1 - 0.04 14.3 0.0 0.085 13.3 0.0 1.7 1 0 0 1 1 1 0 Isoprenylcysteine carboxyl methyltransferase (ICMT) family IalB PF06776.12 EME68406.1 - 2.9e-05 24.1 0.1 7.2e-05 22.8 0.1 1.9 1 1 0 1 1 1 1 Invasion associated locus B (IalB) protein OMP_b-brl PF13505.6 EME68407.1 - 7.8e-18 65.2 11.6 7.8e-18 65.2 11.6 1.5 2 0 0 2 2 2 1 Outer membrane protein beta-barrel domain OmpA PF00691.20 EME68407.1 - 7.5e-17 61.5 0.1 1.2e-16 60.9 0.1 1.3 1 0 0 1 1 1 1 OmpA family Opacity PF02462.15 EME68407.1 - 4.9e-09 36.4 1.7 1.6e-08 34.7 0.7 2.3 2 0 0 2 2 2 1 Opacity family porin protein Surface_Ag_2 PF01617.17 EME68407.1 - 1.5e-08 34.4 1.7 5.2e-06 26.1 0.1 2.4 1 1 1 2 2 2 2 Surface antigen OmpA_membrane PF01389.17 EME68407.1 - 8.2e-07 28.9 5.1 1.2e-06 28.4 5.1 1.2 1 0 0 1 1 1 1 OmpA-like transmembrane domain OmpW PF03922.14 EME68407.1 - 0.00016 21.6 0.3 0.00016 21.6 0.3 2.0 3 0 0 3 3 3 1 OmpW family PagL PF09411.10 EME68407.1 - 0.00023 21.3 1.8 0.0033 17.6 0.6 2.3 1 1 1 2 2 2 1 Lipid A 3-O-deacylase (PagL) Pilus_CpaD PF09476.10 EME68407.1 - 0.11 12.3 0.5 0.16 11.7 0.5 1.2 1 0 0 1 1 1 0 Pilus biogenesis CpaD protein (pilus_cpaD) CDP-OH_P_tran_2 PF08009.11 EME68408.1 - 2.4e-14 52.9 6.6 2.4e-14 52.9 6.6 2.7 2 0 0 2 2 2 1 CDP-alcohol phosphatidyltransferase 2 CDP-OH_P_transf PF01066.21 EME68408.1 - 1.4e-12 48.2 0.6 1.4e-12 48.2 0.6 3.3 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase PS_Dcarbxylase PF02666.15 EME68409.1 - 3.5e-32 111.6 0.0 2.4e-31 108.9 0.0 1.9 1 1 0 1 1 1 1 Phosphatidylserine decarboxylase DUF4131 PF13567.6 EME68409.1 - 0.014 15.1 0.0 0.024 14.3 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) NMT1_3 PF16868.5 EME68412.1 - 2e-75 253.9 0.0 2.3e-75 253.7 0.0 1.0 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.11 EME68412.1 - 2e-07 31.2 0.0 3.2e-07 30.5 0.0 1.3 1 0 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.7 EME68412.1 - 3.9e-06 26.6 0.6 1.5e-05 24.7 0.4 1.8 1 1 1 2 2 2 1 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1_2 PF13379.6 EME68412.1 - 0.00068 19.4 0.1 0.0012 18.6 0.1 1.4 1 0 0 1 1 1 1 NMT1-like family DNA_pol3_gamma3 PF12169.8 EME68413.1 - 1.3e-55 187.2 5.5 2.9e-55 186.1 5.5 1.6 1 0 0 1 1 1 1 DNA polymerase III subunits gamma and tau domain III DNA_pol3_delta2 PF13177.6 EME68413.1 - 3e-38 131.2 0.0 4.1e-38 130.7 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase III, delta subunit DUF3646 PF12362.8 EME68413.1 - 3.1e-37 127.4 0.5 6.4e-37 126.4 0.5 1.6 1 0 0 1 1 1 1 DNA polymerase III gamma and tau subunits C terminal AAA PF00004.29 EME68413.1 - 8e-11 42.5 0.6 5.3e-10 39.8 0.6 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 EME68413.1 - 9e-06 26.0 0.0 0.00058 20.1 0.0 2.7 1 1 0 1 1 1 1 AAA domain RuvB_N PF05496.12 EME68413.1 - 3.1e-05 23.8 0.1 0.00072 19.3 0.0 2.3 1 1 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_30 PF13604.6 EME68413.1 - 3.3e-05 23.7 1.5 7e-05 22.6 0.1 2.3 2 1 0 2 2 2 1 AAA domain AAA_5 PF07728.14 EME68413.1 - 4.5e-05 23.5 0.2 0.34 10.9 0.0 2.6 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_14 PF13173.6 EME68413.1 - 0.00036 20.6 0.0 0.0018 18.3 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 EME68413.1 - 0.0011 19.4 6.0 0.0013 19.2 0.3 3.2 1 1 0 2 2 2 1 AAA ATPase domain TIP49 PF06068.13 EME68413.1 - 0.0014 17.9 0.2 1.2 8.3 0.1 2.2 2 0 0 2 2 2 2 TIP49 P-loop domain AAA_18 PF13238.6 EME68413.1 - 0.0022 18.5 0.0 0.0046 17.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.6 EME68413.1 - 0.014 15.7 0.6 0.27 11.6 0.6 2.4 1 1 0 1 1 1 0 AAA domain AAA_assoc_2 PF16193.5 EME68413.1 - 0.015 15.6 0.3 0.036 14.4 0.3 1.7 1 0 0 1 1 1 0 AAA C-terminal domain AAA_24 PF13479.6 EME68413.1 - 0.016 15.0 0.0 0.03 14.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain ResIII PF04851.15 EME68413.1 - 0.035 14.1 0.4 0.76 9.8 0.0 2.1 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit DUF815 PF05673.13 EME68413.1 - 0.13 11.4 0.0 0.37 9.9 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF815) TsaE PF02367.17 EME68413.1 - 0.14 12.2 0.1 0.28 11.2 0.1 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE NTPase_1 PF03266.15 EME68413.1 - 0.21 11.5 0.6 0.63 9.9 0.2 1.9 2 0 0 2 2 2 0 NTPase YbaB_DNA_bd PF02575.16 EME68414.1 - 3.5e-35 120.1 8.7 4e-35 119.9 8.7 1.0 1 0 0 1 1 1 1 YbaB/EbfC DNA-binding family FliJ PF02050.16 EME68414.1 - 0.13 12.4 4.2 4.3 7.6 0.3 2.1 2 0 0 2 2 2 0 Flagellar FliJ protein SIMPL PF04402.14 EME68414.1 - 1.4 9.3 3.9 1.2 9.5 0.2 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF541) Toprim_4 PF13662.6 EME68415.1 - 1.4e-22 79.9 0.1 2.7e-22 79.0 0.0 1.5 2 0 0 2 2 2 1 Toprim domain RecR PF02132.15 EME68415.1 - 1.6e-14 53.2 0.7 3e-14 52.3 0.7 1.5 1 0 0 1 1 1 1 RecR protein PHF5 PF03660.14 EME68415.1 - 0.037 14.2 0.1 0.061 13.5 0.1 1.3 1 0 0 1 1 1 0 PHF5-like protein Toprim PF01751.22 EME68415.1 - 0.057 13.7 0.0 0.1 12.9 0.0 1.4 1 0 0 1 1 1 0 Toprim domain GST_C_2 PF13410.6 EME68416.1 - 0.063 13.3 0.1 0.078 13.0 0.1 1.2 1 0 0 1 1 1 0 Glutathione S-transferase, C-terminal domain AMP-binding PF00501.28 EME68417.1 - 7.6e-20 70.9 0.0 9.7e-20 70.5 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 EME68417.1 - 1.2e-09 38.9 0.7 2.5e-09 38.0 0.1 1.8 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain Aminotran_1_2 PF00155.21 EME68420.1 - 5.4e-28 98.2 0.0 1.8e-27 96.5 0.0 1.6 1 1 0 1 1 1 1 Aminotransferase class I and II DUF3592 PF12158.8 EME68420.1 - 0.034 14.2 0.1 0.045 13.8 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3592) Flg_hook PF02120.16 EME68420.1 - 0.13 12.2 0.0 7 6.6 0.0 2.8 3 0 0 3 3 3 0 Flagellar hook-length control protein FliK Alliinase_C PF04864.13 EME68420.1 - 0.23 10.3 0.0 0.43 9.4 0.0 1.4 1 0 0 1 1 1 0 Allinase FlaF PF07309.11 EME68421.1 - 1.7e-12 47.3 0.3 2e-12 47.1 0.3 1.0 1 0 0 1 1 1 1 Flagellar protein FlaF GIT_CC PF16559.5 EME68421.1 - 0.015 15.1 0.0 0.066 13.1 0.0 1.9 2 0 0 2 2 2 0 GIT coiled-coil Rho guanine nucleotide exchange factor Glyco_transf_41 PF13844.6 EME68422.1 - 2.8e-91 306.3 0.0 3.7e-51 174.0 0.0 2.1 1 1 1 2 2 2 2 Glycosyl transferase family 41 TPR_2 PF07719.17 EME68422.1 - 3.8e-12 45.3 1.0 4.9e-05 23.1 0.0 5.3 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_16 PF13432.6 EME68422.1 - 5.7e-11 42.9 8.7 2.6e-05 24.8 0.1 3.7 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_1 PF00515.28 EME68422.1 - 3.2e-09 36.2 0.0 5.9e-07 29.0 0.0 3.5 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_8 PF13181.6 EME68422.1 - 1.6e-08 34.1 0.0 0.00015 21.7 0.0 4.1 5 0 0 5 5 3 2 Tetratricopeptide repeat TPR_11 PF13414.6 EME68422.1 - 4.4e-07 29.5 1.9 4.7e-05 23.0 0.0 3.7 2 1 3 5 5 4 1 TPR repeat TPR_14 PF13428.6 EME68422.1 - 1.5e-06 28.5 0.5 0.00034 21.2 0.0 6.9 4 3 5 9 9 9 2 Tetratricopeptide repeat TPR_17 PF13431.6 EME68422.1 - 1.8e-05 24.8 0.1 0.18 12.3 0.0 3.9 4 0 0 4 4 3 2 Tetratricopeptide repeat TPR_12 PF13424.6 EME68422.1 - 5.7e-05 23.3 0.4 5.7e-05 23.3 0.4 4.0 3 1 2 5 5 5 1 Tetratricopeptide repeat TPR_19 PF14559.6 EME68422.1 - 0.00013 22.4 12.5 0.0018 18.7 0.3 4.0 4 1 0 5 5 4 2 Tetratricopeptide repeat TPR_7 PF13176.6 EME68422.1 - 0.00023 21.0 0.3 0.045 13.8 0.0 4.2 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_10 PF13374.6 EME68422.1 - 0.00024 20.9 0.9 0.074 13.0 0.0 3.6 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_6 PF13174.6 EME68422.1 - 0.023 15.3 0.1 3.7 8.4 0.0 4.1 3 1 0 3 3 3 0 Tetratricopeptide repeat TPR_9 PF13371.6 EME68422.1 - 0.087 13.0 0.1 0.087 13.0 0.1 3.7 5 0 0 5 5 5 0 Tetratricopeptide repeat TPR_4 PF07721.14 EME68422.1 - 0.46 11.3 0.0 0.46 11.3 0.0 6.9 7 0 0 7 7 5 0 Tetratricopeptide repeat Acetyltransf_6 PF13480.7 EME68423.1 - 6.8e-08 32.8 5.2 2.3e-07 31.1 1.0 2.4 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FemAB PF02388.16 EME68423.1 - 0.083 11.7 0.0 0.11 11.3 0.0 1.1 1 0 0 1 1 1 0 FemAB family DegT_DnrJ_EryC1 PF01041.17 EME68424.1 - 1.3e-89 301.0 0.1 2.3e-89 300.2 0.1 1.4 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 EME68424.1 - 0.0012 17.9 0.1 0.0017 17.4 0.1 1.2 1 0 0 1 1 1 1 Aminotransferase class-V OKR_DC_1 PF01276.20 EME68424.1 - 0.16 10.7 0.2 0.31 9.7 0.2 1.4 1 1 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain GFO_IDH_MocA PF01408.22 EME68425.1 - 6.2e-14 52.9 0.0 1.1e-13 52.1 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold CTP_transf_3 PF02348.19 EME68426.1 - 2.3e-25 89.8 0.0 2.7e-25 89.6 0.0 1.0 1 0 0 1 1 1 1 Cytidylyltransferase NTP_transf_3 PF12804.7 EME68426.1 - 3.6e-10 40.4 0.2 5.2e-10 39.9 0.2 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain PseudoU_synth_2 PF00849.22 EME68427.1 - 5.2e-29 101.4 0.0 6.7e-29 101.0 0.0 1.1 1 0 0 1 1 1 1 RNA pseudouridylate synthase SgrR_N PF12793.7 EME68427.1 - 0.17 12.1 0.2 0.3 11.3 0.2 1.4 1 0 0 1 1 1 0 Sugar transport-related sRNA regulator N-term MarR_2 PF12802.7 EME68429.1 - 2.4e-07 30.5 0.2 5.1e-07 29.5 0.2 1.5 1 0 0 1 1 1 1 MarR family MarR PF01047.22 EME68429.1 - 5.2e-06 26.3 0.0 7.5e-06 25.8 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 EME68429.1 - 0.0004 20.4 1.5 0.0006 19.8 1.5 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 EME68429.1 - 0.0029 17.4 0.6 0.005 16.6 0.6 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.12 EME68429.1 - 0.021 14.7 0.0 0.032 14.2 0.0 1.3 1 0 0 1 1 1 0 HTH domain DUF2250 PF10007.9 EME68429.1 - 0.087 12.9 0.0 0.12 12.5 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_27 PF13463.6 EME68429.1 - 0.088 13.3 0.1 0.14 12.7 0.1 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain UvrB_inter PF17757.1 EME68430.1 - 1.6e-33 114.7 0.0 9.8e-33 112.2 0.0 2.1 2 0 0 2 2 2 1 UvrB interaction domain UvrB PF12344.8 EME68430.1 - 1.2e-19 69.9 0.1 3.1e-19 68.6 0.1 1.8 1 0 0 1 1 1 1 Ultra-violet resistance protein B Helicase_C PF00271.31 EME68430.1 - 1.4e-17 64.0 0.1 3.7e-17 62.7 0.1 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 EME68430.1 - 1.6e-10 41.2 0.0 9.9e-10 38.7 0.0 2.0 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit UVR PF02151.19 EME68430.1 - 1e-07 31.5 7.9 3.7e-07 29.7 7.9 2.1 1 0 0 1 1 1 1 UvrB/uvrC motif DEAD PF00270.29 EME68430.1 - 9.1e-06 25.5 0.0 4.1e-05 23.4 0.0 2.1 3 0 0 3 3 3 1 DEAD/DEAH box helicase AAA_30 PF13604.6 EME68430.1 - 1.4e-05 24.9 0.0 0.00082 19.1 0.0 3.3 4 0 0 4 4 4 1 AAA domain AAA_19 PF13245.6 EME68430.1 - 0.00079 19.8 0.0 0.5 10.7 0.0 3.1 3 1 0 3 3 3 1 AAA domain UB2H PF14814.6 EME68430.1 - 0.031 14.3 0.0 0.069 13.2 0.0 1.6 1 0 0 1 1 1 0 Bifunctional transglycosylase second domain eIF3_p135 PF12807.7 EME68430.1 - 0.049 13.7 0.2 0.19 11.8 0.1 1.8 1 1 0 2 2 2 0 Translation initiation factor eIF3 subunit 135 Microtub_bd PF16796.5 EME68430.1 - 0.095 12.6 0.0 0.27 11.1 0.0 1.7 1 0 0 1 1 1 0 Microtubule binding Kinesin PF00225.23 EME68430.1 - 0.17 10.8 0.0 0.27 10.1 0.0 1.2 1 0 0 1 1 1 0 Kinesin motor domain Pkinase PF00069.25 EME68431.1 - 3.9e-25 88.7 0.0 9.2e-25 87.5 0.0 1.5 2 0 0 2 2 2 1 Protein kinase domain Pkinase_Tyr PF07714.17 EME68431.1 - 2.7e-17 62.9 0.0 1.7e-16 60.3 0.0 1.9 2 0 0 2 2 2 1 Protein tyrosine kinase Kdo PF06293.14 EME68431.1 - 0.024 14.0 0.0 0.03 13.7 0.0 1.2 1 0 0 1 1 1 0 Lipopolysaccharide kinase (Kdo/WaaP) family Kinase-like PF14531.6 EME68431.1 - 0.032 13.5 0.0 0.045 13.1 0.0 1.2 1 0 0 1 1 1 0 Kinase-like APH PF01636.23 EME68431.1 - 0.097 12.6 1.2 2.3 8.1 0.1 2.8 1 1 2 3 3 3 0 Phosphotransferase enzyme family UvrC_HhH_N PF08459.11 EME68432.1 - 2.1e-51 173.9 0.0 3.5e-51 173.1 0.0 1.4 1 0 0 1 1 1 1 UvrC Helix-hairpin-helix N-terminal HHH_2 PF12826.7 EME68432.1 - 8.5e-08 32.2 0.0 1.9e-07 31.1 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif UVR PF02151.19 EME68432.1 - 1.4e-07 31.0 2.8 2.8e-07 30.1 2.8 1.5 1 0 0 1 1 1 1 UvrB/uvrC motif HHH PF00633.23 EME68432.1 - 2.4e-07 30.3 0.1 0.0048 16.7 0.0 2.7 2 0 0 2 2 2 2 Helix-hairpin-helix motif GIY-YIG PF01541.24 EME68432.1 - 4.8e-07 30.0 0.0 9.3e-07 29.0 0.0 1.5 1 0 0 1 1 1 1 GIY-YIG catalytic domain HHH_5 PF14520.6 EME68432.1 - 5.3e-07 30.1 0.0 1.5e-06 28.7 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH_3 PF12836.7 EME68432.1 - 0.037 14.3 0.1 0.66 10.3 0.0 2.5 3 0 0 3 3 3 0 Helix-hairpin-helix motif GTA_holin_3TM PF11351.8 EME68432.1 - 0.044 14.3 2.5 0.37 11.3 2.0 2.4 2 0 0 2 2 2 0 Holin of 3TMs, for gene-transfer release CDP-OH_P_transf PF01066.21 EME68433.1 - 3.7e-18 66.1 0.2 3.7e-18 66.1 0.2 2.2 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase MobB PF03205.14 EME68434.1 - 6.8e-50 168.4 0.0 7.9e-50 168.2 0.0 1.0 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B PRK PF00485.18 EME68434.1 - 0.021 14.6 0.0 0.028 14.2 0.0 1.2 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family RsgA_GTPase PF03193.16 EME68434.1 - 0.024 14.5 0.0 0.031 14.2 0.0 1.2 1 0 0 1 1 1 0 RsgA GTPase cobW PF02492.19 EME68434.1 - 0.03 13.9 0.0 0.047 13.3 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Ploopntkinase2 PF18747.1 EME68434.1 - 0.037 13.3 0.4 0.049 12.9 0.3 1.3 1 1 0 1 1 1 0 P-loop Nucleotide Kinase2 MeaB PF03308.16 EME68434.1 - 0.069 12.1 0.2 0.1 11.5 0.2 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB NTPase_1 PF03266.15 EME68434.1 - 0.081 12.8 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 NTPase CbiA PF01656.23 EME68434.1 - 0.11 12.5 0.0 0.11 12.5 0.0 1.2 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain ABC_tran PF00005.27 EME68434.1 - 0.15 12.6 0.3 0.19 12.2 0.3 1.4 1 1 0 1 1 1 0 ABC transporter NACHT PF05729.12 EME68434.1 - 0.17 11.8 0.1 0.29 11.1 0.1 1.4 1 0 0 1 1 1 0 NACHT domain MoeA_N PF03453.17 EME68435.1 - 1e-42 145.6 2.4 2e-42 144.6 2.4 1.5 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 EME68435.1 - 1.3e-25 89.8 0.0 2.4e-25 88.9 0.0 1.5 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 EME68435.1 - 5.7e-19 68.1 0.1 2.3e-18 66.1 0.0 2.2 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) DUF348 PF03990.14 EME68435.1 - 0.052 13.3 0.3 0.87 9.4 0.0 2.6 2 0 0 2 2 2 0 G5-linked-Ubiquitin-like domain ThiS PF02597.20 EME68436.1 - 1.1e-18 67.7 0.0 1.2e-18 67.5 0.0 1.0 1 0 0 1 1 1 1 ThiS family MoaE PF02391.17 EME68437.1 - 4.8e-34 117.0 0.0 5.8e-34 116.8 0.0 1.1 1 0 0 1 1 1 1 MoaE protein Glyco_transf_41 PF13844.6 EME68439.1 - 5.5e-88 295.5 0.0 1.5e-44 152.2 0.0 2.1 1 1 1 2 2 2 2 Glycosyl transferase family 41 TPR_16 PF13432.6 EME68439.1 - 4.9e-08 33.5 3.4 0.00029 21.4 0.0 2.8 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_11 PF13414.6 EME68439.1 - 2.4e-07 30.3 5.2 2.8e-05 23.7 0.0 3.5 3 0 0 3 3 3 1 TPR repeat TPR_7 PF13176.6 EME68439.1 - 2.9e-06 26.9 0.1 0.59 10.3 0.0 4.4 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_1 PF00515.28 EME68439.1 - 7.5e-06 25.6 0.0 0.011 15.5 0.2 2.8 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_17 PF13431.6 EME68439.1 - 6.3e-05 23.1 0.1 0.0082 16.5 0.0 3.0 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_8 PF13181.6 EME68439.1 - 0.00012 22.0 0.0 0.19 12.1 0.0 3.5 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_2 PF07719.17 EME68439.1 - 0.00014 21.7 1.8 0.18 12.0 0.2 3.8 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_12 PF13424.6 EME68439.1 - 0.00032 20.9 0.4 0.33 11.3 0.6 3.1 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_14 PF13428.6 EME68439.1 - 0.0021 18.8 11.2 0.46 11.4 0.0 5.2 4 1 2 6 6 5 2 Tetratricopeptide repeat OKR_DC_1_N PF03709.15 EME68439.1 - 0.024 14.9 0.0 0.056 13.7 0.0 1.5 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain TPR_10 PF13374.6 EME68439.1 - 0.07 13.0 0.0 6.9 6.7 0.1 3.0 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_20 PF14561.6 EME68439.1 - 0.12 12.7 0.0 4.1 7.8 0.0 3.0 3 0 0 3 3 3 0 Tetratricopeptide repeat RVT_thumb PF06817.14 EME68439.1 - 0.13 12.1 0.0 0.33 10.8 0.0 1.6 1 0 0 1 1 1 0 Reverse transcriptase thumb domain TPR_6 PF13174.6 EME68439.1 - 0.18 12.5 1.6 2.4 9.0 0.1 3.1 3 0 0 3 3 2 0 Tetratricopeptide repeat Glyco_transf_41 PF13844.6 EME68440.1 - 1e-85 288.0 0.0 3.3e-43 147.8 0.0 2.2 1 1 1 2 2 2 2 Glycosyl transferase family 41 TPR_2 PF07719.17 EME68440.1 - 2.2e-11 42.9 0.3 7.3e-06 25.7 0.0 4.5 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_12 PF13424.6 EME68440.1 - 2.4e-10 40.6 4.7 0.00025 21.3 1.4 3.0 2 1 0 2 2 2 2 Tetratricopeptide repeat TPR_14 PF13428.6 EME68440.1 - 8.2e-09 35.6 9.7 0.0044 17.7 0.1 5.2 3 1 2 5 5 4 2 Tetratricopeptide repeat TPR_8 PF13181.6 EME68440.1 - 9.7e-09 34.8 0.0 0.00018 21.4 0.0 4.3 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_1 PF00515.28 EME68440.1 - 2e-08 33.7 0.0 6.6e-06 25.7 0.0 3.8 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_17 PF13431.6 EME68440.1 - 1e-07 31.8 0.4 0.00021 21.4 0.0 3.5 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_16 PF13432.6 EME68440.1 - 3.4e-07 30.8 1.7 0.00047 20.7 0.0 3.7 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_6 PF13174.6 EME68440.1 - 1.5e-06 28.4 0.0 0.089 13.5 0.0 4.0 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_4 PF07721.14 EME68440.1 - 9.5e-06 25.8 2.9 0.23 12.2 0.0 4.7 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_19 PF14559.6 EME68440.1 - 1.9e-05 25.1 4.3 0.0011 19.4 0.0 3.4 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_11 PF13414.6 EME68440.1 - 2.3e-05 24.0 0.1 0.00011 21.8 0.0 2.2 2 0 0 2 2 2 1 TPR repeat TPR_7 PF13176.6 EME68440.1 - 0.0012 18.7 7.3 1.2 9.3 0.2 4.6 5 1 1 6 6 4 2 Tetratricopeptide repeat DUF3856 PF12968.7 EME68440.1 - 0.0061 16.6 0.1 6.1 6.9 0.0 3.2 2 1 1 3 3 3 1 Domain of Unknown Function (DUF3856) ANAPC3 PF12895.7 EME68440.1 - 0.013 15.7 0.2 0.092 13.0 0.1 2.2 2 0 0 2 2 2 0 Anaphase-promoting complex, cyclosome, subunit 3 TPR_MalT PF17874.1 EME68440.1 - 0.024 14.0 3.0 0.043 13.2 3.0 1.4 1 0 0 1 1 1 0 MalT-like TPR region TPR_10 PF13374.6 EME68440.1 - 0.3 11.0 7.2 0.82 9.6 0.0 4.0 4 0 0 4 4 4 0 Tetratricopeptide repeat LptD PF04453.14 EME68441.1 - 1.2e-47 163.0 0.1 1.6e-47 162.6 0.1 1.1 1 0 0 1 1 1 1 LPS transport system D OstA PF03968.14 EME68441.1 - 0.0059 16.8 0.3 0.024 14.9 0.3 2.2 1 1 0 1 1 1 1 OstA-like protein OstA_2 PF13100.6 EME68441.1 - 0.067 12.8 0.1 0.13 11.9 0.1 1.4 1 0 0 1 1 1 0 OstA-like protein Rotamase PF00639.21 EME68442.1 - 2.7e-19 69.9 0.0 6.6e-16 59.1 0.0 2.9 2 1 1 3 3 3 2 PPIC-type PPIASE domain Rotamase_3 PF13616.6 EME68442.1 - 3.3e-17 63.1 0.0 7.6e-16 58.7 0.0 2.3 2 0 0 2 2 2 1 PPIC-type PPIASE domain SurA_N PF09312.11 EME68442.1 - 7.1e-15 55.1 2.0 2.2e-14 53.5 1.4 2.2 2 0 0 2 2 2 1 SurA N-terminal domain SurA_N_3 PF13624.6 EME68442.1 - 2.4e-09 37.2 0.0 8.3e-09 35.4 0.0 2.0 2 0 0 2 2 2 1 SurA N-terminal domain Rotamase_2 PF13145.6 EME68442.1 - 1.6e-06 28.9 0.0 0.00012 22.9 0.0 2.6 3 0 0 3 3 3 1 PPIC-type PPIASE domain SurA_N_2 PF13623.6 EME68442.1 - 2e-06 27.7 0.1 2e-05 24.5 0.0 2.3 2 0 0 2 2 2 1 SurA N-terminal domain PdxA PF04166.12 EME68443.1 - 2.4e-97 325.7 0.0 2.9e-97 325.5 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal phosphate biosynthetic protein PdxA BtrH_N PF14399.6 EME68443.1 - 0.16 12.2 0.0 0.32 11.2 0.0 1.4 1 0 0 1 1 1 0 Butirosin biosynthesis protein H, N-terminal RrnaAD PF00398.20 EME68444.1 - 9.3e-46 156.0 0.0 1e-45 155.9 0.0 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_25 PF13649.6 EME68444.1 - 0.00043 20.9 0.0 0.00077 20.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 EME68444.1 - 0.019 15.6 0.0 0.034 14.8 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain MCPsignal PF00015.21 EME68445.1 - 1.4e-27 96.6 13.0 3.3e-27 95.4 10.3 2.7 1 1 1 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF948 PF06103.11 EME68445.1 - 2.4e-06 27.7 5.1 0.53 10.6 0.1 4.4 2 2 2 4 4 4 3 Bacterial protein of unknown function (DUF948) Laminin_II PF06009.12 EME68445.1 - 0.001 19.1 0.4 9.6 6.2 0.0 3.6 2 1 1 3 3 3 2 Laminin Domain II NPV_P10 PF05531.12 EME68445.1 - 0.0025 18.2 1.3 1.9 9.0 0.0 4.1 3 1 1 4 4 4 1 Nucleopolyhedrovirus P10 protein DUF1664 PF07889.12 EME68445.1 - 0.0092 16.0 1.1 1.9 8.6 0.1 3.4 2 2 1 3 3 3 1 Protein of unknown function (DUF1664) Cytidylate_kin2 PF13189.6 EME68446.1 - 2.5e-37 128.7 0.0 2.9e-37 128.5 0.0 1.0 1 0 0 1 1 1 1 Cytidylate kinase-like family Ni_hydr_CYTB PF01292.20 EME68447.1 - 4.4e-21 75.3 11.4 5e-21 75.1 11.4 1.0 1 0 0 1 1 1 1 Prokaryotic cytochrome b561 DUF2231 PF09990.9 EME68447.1 - 0.028 14.8 0.6 0.028 14.8 0.6 2.8 1 1 2 3 3 3 0 Predicted membrane protein (DUF2231) MscS_TM PF12794.7 EME68447.1 - 0.038 12.8 2.0 0.056 12.3 2.0 1.3 1 0 0 1 1 1 0 Mechanosensitive ion channel inner membrane domain 1 IncD PF17628.2 EME68447.1 - 0.73 9.6 2.7 0.74 9.6 1.8 1.6 1 1 0 1 1 1 0 Inclusion membrane protein D SPOR PF05036.13 EME68448.1 - 0.00014 22.2 0.0 0.00026 21.3 0.0 1.5 1 0 0 1 1 1 1 Sporulation related domain SCP2_2 PF13530.6 EME68448.1 - 0.082 13.3 0.1 0.31 11.5 0.0 1.9 2 0 0 2 2 2 0 Sterol carrier protein domain PAS_4 PF08448.10 EME68449.1 - 3.9e-32 110.8 3.2 1.8e-18 66.8 0.2 3.4 3 0 0 3 3 3 2 PAS fold PAS PF00989.25 EME68449.1 - 1.8e-25 89.2 0.0 4e-15 55.8 0.0 2.7 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.26 EME68449.1 - 5e-25 88.2 0.0 1.4e-24 86.7 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 EME68449.1 - 4.9e-21 74.9 0.0 8.1e-10 38.9 0.0 2.6 2 0 0 2 2 2 2 PAS domain HisKA PF00512.25 EME68449.1 - 3.1e-13 49.5 2.8 4e-13 49.2 0.6 2.4 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.7 EME68449.1 - 3.2e-13 49.3 0.0 1.8e-06 27.8 0.0 2.8 2 0 0 2 2 2 2 PAS domain dCache_1 PF02743.18 EME68449.1 - 5.8e-13 49.2 0.0 6.7e-11 42.5 0.0 3.2 3 0 0 3 3 3 1 Cache domain GAF_2 PF13185.6 EME68449.1 - 1e-11 45.3 5.9 2.3e-08 34.4 0.1 4.0 4 0 0 4 4 4 2 GAF domain GAF PF01590.26 EME68449.1 - 3.3e-11 43.9 2.8 3.3e-07 31.0 0.1 3.3 2 1 0 2 2 2 2 GAF domain GAF_3 PF13492.6 EME68449.1 - 2.1e-09 37.8 0.0 8.3e-08 32.6 0.0 2.9 3 0 0 3 3 2 1 GAF domain PAS_7 PF12860.7 EME68449.1 - 1e-06 28.9 0.0 0.0012 18.9 0.0 3.6 2 1 0 2 2 2 1 PAS fold HATPase_c_5 PF14501.6 EME68449.1 - 0.009 15.9 0.0 0.02 14.8 0.0 1.5 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.6 EME68449.1 - 0.057 13.2 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SpoVT_C PF15714.5 EME68449.1 - 0.11 12.5 0.0 1.5 8.9 0.0 2.5 2 0 0 2 2 2 0 Stage V sporulation protein T C-terminal, transcription factor PAS_3 PF08447.12 EME68449.1 - 0.13 12.5 0.0 4.1 7.8 0.0 2.8 2 1 0 2 2 2 0 PAS fold Cache_3-Cache_2 PF17201.4 EME68449.1 - 0.2 10.9 0.0 0.38 10.0 0.0 1.4 1 0 0 1 1 1 0 Cache 3/Cache 2 fusion domain PhaC_N PF07167.13 EME68450.1 - 7.6e-80 266.6 0.4 1.5e-79 265.6 0.1 1.7 2 0 0 2 2 2 1 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus Abhydrolase_1 PF00561.20 EME68450.1 - 2.2e-14 53.8 0.1 9.9e-14 51.6 0.0 2.0 2 0 0 2 2 2 1 alpha/beta hydrolase fold DLH PF01738.18 EME68450.1 - 0.0039 16.8 0.0 0.6 9.6 0.0 2.5 2 0 0 2 2 2 2 Dienelactone hydrolase family DUF3141 PF11339.8 EME68450.1 - 0.0065 15.0 0.1 0.017 13.6 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF3141) OmpA PF00691.20 EME68451.1 - 0.007 16.7 0.0 0.015 15.7 0.0 1.5 1 0 0 1 1 1 1 OmpA family Pilus_CpaD PF09476.10 EME68451.1 - 0.029 14.1 1.2 0.037 13.8 0.2 1.6 2 0 0 2 2 2 0 Pilus biogenesis CpaD protein (pilus_cpaD) Aminotran_1_2 PF00155.21 EME68452.1 - 4.1e-53 180.8 0.0 4.7e-53 180.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DUF3339 PF11820.8 EME68452.1 - 0.18 12.0 0.0 0.43 10.8 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3339) Homoserine_dh PF00742.19 EME68453.1 - 1.7e-64 216.9 0.0 3e-64 216.1 0.0 1.4 1 0 0 1 1 1 1 Homoserine dehydrogenase NAD_binding_3 PF03447.16 EME68453.1 - 2.3e-13 50.8 1.4 4.6e-13 49.8 1.4 1.5 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain ACT PF01842.25 EME68453.1 - 1.9e-08 34.0 0.1 3.9e-08 32.9 0.1 1.6 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.6 EME68453.1 - 0.00047 20.7 0.0 0.0011 19.5 0.0 1.6 1 0 0 1 1 1 1 ACT domain DXP_reductoisom PF02670.16 EME68453.1 - 0.019 15.7 0.3 0.046 14.4 0.3 1.7 1 0 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase Imm49 PF15575.6 EME68453.1 - 0.065 13.0 0.1 12 5.6 0.0 2.3 2 0 0 2 2 2 0 Immunity protein 49 FBPase_glpX PF03320.13 EME68454.1 - 3e-116 387.6 5.3 3.3e-116 387.5 5.3 1.0 1 0 0 1 1 1 1 Bacterial fructose-1,6-bisphosphatase, glpX-encoded RsgI_N PF12791.7 EME68454.1 - 0.2 11.6 0.0 0.37 10.7 0.0 1.4 1 0 0 1 1 1 0 Anti-sigma factor N-terminus RecJ_OB PF17768.1 EME68455.1 - 1.1e-21 77.1 0.0 1.6e-21 76.5 0.0 1.3 1 0 0 1 1 1 1 RecJ OB domain DHHA1 PF02272.19 EME68455.1 - 7.8e-21 74.9 0.2 2e-20 73.6 0.2 1.7 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.20 EME68455.1 - 4.5e-08 33.2 0.1 1.4e-07 31.7 0.1 1.7 1 1 0 1 1 1 1 DHH family Peripla_BP_6 PF13458.6 EME68455.1 - 4e-05 23.4 0.3 8.7e-05 22.3 0.3 1.5 1 0 0 1 1 1 1 Periplasmic binding protein ThiG PF05690.14 EME68455.1 - 0.059 12.7 1.1 0.13 11.6 1.1 1.5 1 0 0 1 1 1 0 Thiazole biosynthesis protein ThiG Nitro_FeMo-Co PF02579.17 EME68455.1 - 0.06 13.7 0.1 0.15 12.4 0.1 1.6 1 0 0 1 1 1 0 Dinitrogenase iron-molybdenum cofactor DUF2384 PF09722.10 EME68456.1 - 0.16 12.1 0.5 0.47 10.5 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2384) SnoaL_2 PF12680.7 EME68457.1 - 6.2e-12 46.1 0.1 7e-12 45.9 0.1 1.2 1 0 0 1 1 1 1 SnoaL-like domain SnoaL PF07366.12 EME68457.1 - 0.00013 21.7 0.1 0.00018 21.3 0.1 1.2 1 0 0 1 1 1 1 SnoaL-like polyketide cyclase DUF4440 PF14534.6 EME68457.1 - 0.073 13.5 0.1 0.11 12.9 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4440) Peptidase_S15 PF02129.18 EME68458.1 - 7.3e-13 48.7 0.1 1e-12 48.2 0.1 1.3 1 0 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) Peptidase_S9 PF00326.21 EME68458.1 - 1.4e-07 31.2 0.6 2.3e-06 27.3 0.3 2.2 1 1 0 2 2 2 1 Prolyl oligopeptidase family DLH PF01738.18 EME68458.1 - 2.2e-07 30.7 0.0 3.6e-07 30.0 0.0 1.4 1 0 0 1 1 1 1 Dienelactone hydrolase family Hydrolase_4 PF12146.8 EME68458.1 - 3.6e-06 26.4 0.1 0.00039 19.8 0.2 2.6 2 1 1 3 3 3 1 Serine aminopeptidase, S33 AXE1 PF05448.12 EME68458.1 - 0.00083 18.1 0.9 0.0054 15.4 0.9 2.0 1 1 0 1 1 1 1 Acetyl xylan esterase (AXE1) Esterase PF00756.20 EME68458.1 - 0.0058 16.3 0.2 0.021 14.5 0.1 1.9 1 1 1 2 2 2 1 Putative esterase Abhydrolase_3 PF07859.13 EME68458.1 - 0.013 15.4 0.1 0.028 14.3 0.1 1.6 1 0 0 1 1 1 0 alpha/beta hydrolase fold BAAT_C PF08840.11 EME68458.1 - 0.016 15.2 0.0 0.022 14.7 0.0 1.2 1 0 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal DUF4189 PF13827.6 EME68458.1 - 0.04 14.4 0.2 0.085 13.4 0.2 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4189) Abhydrolase_1 PF00561.20 EME68458.1 - 0.1 12.2 0.0 0.22 11.1 0.0 1.5 1 1 1 2 2 2 0 alpha/beta hydrolase fold EAL PF00563.20 EME68459.1 - 2.8e-05 23.8 0.3 0.0003 20.4 0.2 2.2 2 0 0 2 2 2 1 EAL domain HisKA PF00512.25 EME68460.1 - 8.6e-17 60.9 0.1 8.6e-17 60.9 0.1 4.1 5 1 0 5 5 5 1 His Kinase A (phospho-acceptor) domain HAMP PF00672.25 EME68460.1 - 3.7e-06 27.2 9.4 0.00023 21.5 0.2 4.4 4 0 0 4 4 4 2 HAMP domain FAM184 PF15665.5 EME68460.1 - 0.11 12.3 5.6 0.49 10.1 0.1 2.6 2 0 0 2 2 2 0 Family with sequence similarity 184, A and B HATPase_c PF02518.26 EME68460.1 - 0.16 12.5 0.0 0.33 11.5 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Spore_III_AB PF09548.10 EME68460.1 - 0.37 10.9 3.6 1.8 8.6 0.0 2.9 2 1 0 3 3 3 0 Stage III sporulation protein AB (spore_III_AB) Rrf2 PF02082.20 EME68461.1 - 2e-23 82.5 0.1 2.9e-23 82.0 0.1 1.2 1 0 0 1 1 1 1 Transcriptional regulator MarR_2 PF12802.7 EME68461.1 - 5.2e-06 26.3 0.0 1.2e-05 25.1 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 EME68461.1 - 5.9e-05 23.0 0.1 0.0036 17.3 0.0 2.2 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_20 PF12840.7 EME68461.1 - 0.00011 22.1 0.0 0.0002 21.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.6 EME68461.1 - 0.00084 19.8 0.1 0.0014 19.1 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.19 EME68461.1 - 0.0036 17.2 0.0 0.0057 16.5 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 EME68461.1 - 0.0046 16.7 0.0 0.0097 15.7 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain GntR PF00392.21 EME68461.1 - 0.0089 15.7 0.0 0.016 14.8 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family MarR PF01047.22 EME68461.1 - 0.012 15.5 0.0 0.021 14.7 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_AraC PF00165.23 EME68461.1 - 0.017 15.2 0.0 0.045 13.9 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_6 PF01418.17 EME68461.1 - 0.018 15.0 0.0 0.092 12.7 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain, rpiR family Fe_dep_repress PF01325.19 EME68461.1 - 0.019 15.1 0.0 0.027 14.7 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_11 PF08279.12 EME68461.1 - 0.025 14.5 0.0 0.12 12.4 0.0 1.9 2 0 0 2 2 2 0 HTH domain PuR_N PF09182.10 EME68461.1 - 0.026 14.5 0.1 0.12 12.3 0.1 2.0 1 1 0 1 1 1 0 Bacterial purine repressor, N-terminal RQC PF09382.10 EME68461.1 - 0.045 13.5 0.0 0.078 12.8 0.0 1.5 1 0 0 1 1 1 0 RQC domain Rio2_N PF09202.11 EME68461.1 - 0.084 13.1 0.0 0.15 12.3 0.0 1.4 1 0 0 1 1 1 0 Rio2, N-terminal DUF1323 PF07037.11 EME68461.1 - 0.092 13.1 0.0 0.17 12.3 0.0 1.5 2 0 0 2 2 1 0 Putative transcription regulator (DUF1323) SgrR_N PF12793.7 EME68461.1 - 0.092 13.0 0.0 0.13 12.5 0.0 1.3 1 0 0 1 1 1 0 Sugar transport-related sRNA regulator N-term HTH_17 PF12728.7 EME68461.1 - 0.1 12.8 0.1 0.17 12.1 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_46 PF15977.5 EME68461.1 - 0.16 12.0 0.1 2.2 8.4 0.0 2.5 2 1 1 3 3 3 0 Winged helix-turn-helix DNA binding Response_reg PF00072.24 EME68462.1 - 0.00072 19.7 0.0 0.0026 17.9 0.0 1.9 2 0 0 2 2 2 1 Response regulator receiver domain Vps51 PF08700.11 EME68462.1 - 0.0033 17.5 0.1 0.0069 16.4 0.1 1.5 1 0 0 1 1 1 1 Vps51/Vps67 Hpt PF01627.23 EME68462.1 - 0.0047 17.2 0.3 0.011 16.0 0.3 1.7 1 1 0 1 1 1 1 Hpt domain EzrA PF06160.12 EME68462.1 - 0.017 13.3 0.2 0.024 12.8 0.2 1.1 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA Aldedh PF00171.22 EME68463.1 - 1.3e-168 561.3 1.1 1.5e-168 561.1 1.1 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family Abhydrolase_6 PF12697.7 EME68464.1 - 9.6e-21 75.4 6.8 1.2e-20 75.1 6.8 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 EME68464.1 - 5e-18 65.7 0.1 2.4e-17 63.4 0.1 1.8 1 1 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 EME68464.1 - 0.00012 21.4 0.1 0.00034 19.9 0.1 1.7 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Methyltransf_11 PF08241.12 EME68465.1 - 5.2e-11 43.1 0.0 9.1e-11 42.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 EME68465.1 - 1.7e-08 34.5 0.1 4e-08 33.3 0.1 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 EME68465.1 - 5e-06 27.2 0.0 9.6e-06 26.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 EME68465.1 - 6.2e-06 25.7 0.0 9.2e-06 25.2 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.6 EME68465.1 - 2e-05 24.4 0.0 3.1e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 EME68465.1 - 2.3e-05 25.0 0.0 4.7e-05 24.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 EME68465.1 - 0.049 13.2 0.0 0.068 12.8 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW DctP PF03480.13 EME68466.1 - 1e-26 93.9 0.0 1.4e-26 93.5 0.0 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein, family 7 AAA_assoc_C PF09821.9 EME68467.1 - 5.8e-42 143.0 0.4 9e-42 142.4 0.4 1.3 1 0 0 1 1 1 1 C-terminal AAA-associated domain ABC_tran PF00005.27 EME68467.1 - 5.6e-33 114.4 0.0 9e-33 113.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 EME68467.1 - 5.8e-07 29.6 0.4 0.008 16.0 0.1 2.3 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 EME68467.1 - 0.00024 20.8 0.1 0.00056 19.6 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 EME68467.1 - 0.00039 20.4 0.0 0.00069 19.6 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 EME68467.1 - 0.0068 16.8 0.4 0.021 15.2 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_30 PF13604.6 EME68467.1 - 0.016 14.9 0.1 0.032 13.9 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 EME68467.1 - 0.034 14.4 1.8 0.38 11.0 0.7 2.8 2 1 0 2 2 2 0 AAA domain NACHT PF05729.12 EME68467.1 - 0.042 13.8 0.2 0.091 12.7 0.2 1.5 1 0 0 1 1 1 0 NACHT domain CbiA PF01656.23 EME68467.1 - 0.11 12.5 1.2 1.8 8.7 0.8 2.2 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain MMR_HSR1 PF01926.23 EME68467.1 - 0.12 12.5 0.2 0.31 11.1 0.2 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase ABC_ATPase PF09818.9 EME68467.1 - 0.12 11.1 0.0 1.9 7.2 0.0 2.3 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_23 PF13476.6 EME68467.1 - 0.12 12.8 0.0 0.2 12.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 EME68467.1 - 0.16 12.0 0.2 0.4 10.7 0.2 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) G-alpha PF00503.20 EME68467.1 - 0.22 10.6 0.0 0.42 9.7 0.0 1.4 1 0 0 1 1 1 0 G-protein alpha subunit DUF87 PF01935.17 EME68467.1 - 0.87 9.6 2.7 0.69 10.0 1.0 1.6 2 0 0 2 2 2 0 Helicase HerA, central domain BPD_transp_1 PF00528.22 EME68468.1 - 1.7e-20 73.6 35.9 6.2e-12 45.6 12.1 3.5 4 1 0 4 4 4 2 Binding-protein-dependent transport system inner membrane component CoatB PF10389.9 EME68468.1 - 0.0049 16.7 2.3 0.053 13.4 0.9 2.8 2 0 0 2 2 2 1 Bacteriophage coat protein B SLATT_3 PF18184.1 EME68468.1 - 7 6.8 7.1 1.8 8.7 1.5 2.4 2 0 0 2 2 2 0 SMODS and SLOG-associating 2TM effector domain 3 DHFR_1 PF00186.19 EME68469.1 - 2.1e-55 186.8 0.0 2.3e-55 186.7 0.0 1.0 1 0 0 1 1 1 1 Dihydrofolate reductase Thymidylat_synt PF00303.19 EME68470.1 - 6.2e-123 409.2 0.0 7e-123 409.0 0.0 1.0 1 0 0 1 1 1 1 Thymidylate synthase SspB PF04386.13 EME68471.1 - 2.2e-48 164.2 0.0 2.5e-48 164.0 0.0 1.0 1 0 0 1 1 1 1 Stringent starvation protein B Fumerase_C PF05683.12 EME68472.1 - 8.7e-89 296.3 0.0 1.6e-88 295.4 0.0 1.5 1 0 0 1 1 1 1 Fumarase C-terminus Fumerase PF05681.14 EME68472.1 - 2.8e-87 292.6 0.0 3.9e-87 292.1 0.0 1.2 1 0 0 1 1 1 1 Fumarate hydratase (Fumerase) Histone_H2A_C PF16211.5 EME68472.1 - 0.023 14.4 0.0 0.051 13.3 0.0 1.5 1 0 0 1 1 1 0 C-terminus of histone H2A Colipase_C PF02740.14 EME68472.1 - 0.099 12.8 0.7 0.19 11.9 0.1 1.7 2 0 0 2 2 2 0 Colipase, C-terminal domain PG_binding_1 PF01471.18 EME68473.1 - 0.15 12.3 0.0 0.44 10.8 0.0 1.8 2 0 0 2 2 2 0 Putative peptidoglycan binding domain Abhydrolase_6 PF12697.7 EME68474.1 - 1.7e-19 71.3 13.6 2e-19 71.1 13.6 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 EME68474.1 - 5.8e-14 51.9 4.7 7.1e-13 48.4 4.7 2.0 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 EME68474.1 - 2.5e-13 50.3 1.7 2.8e-12 46.9 2.4 1.9 2 0 0 2 2 2 1 alpha/beta hydrolase fold Ser_hydrolase PF06821.13 EME68474.1 - 4.7e-07 29.8 0.0 2.1e-06 27.7 0.0 1.9 2 0 0 2 2 2 1 Serine hydrolase Abhydrolase_5 PF12695.7 EME68474.1 - 0.0019 18.0 0.1 0.0036 17.1 0.1 1.4 1 0 0 1 1 1 1 Alpha/beta hydrolase family PGAP1 PF07819.13 EME68474.1 - 0.0073 16.1 0.1 0.019 14.7 0.1 1.6 1 0 0 1 1 1 1 PGAP1-like protein Peptidase_S9 PF00326.21 EME68474.1 - 0.093 12.2 0.4 2.2 7.7 0.1 2.6 2 1 1 3 3 3 0 Prolyl oligopeptidase family Cas_Cas4 PF01930.17 EME68475.1 - 0.11 12.6 0.0 0.15 12.2 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function DUF83 FliMN_C PF01052.20 EME68476.1 - 4.4e-25 87.5 1.4 5.1e-25 87.3 1.4 1.1 1 0 0 1 1 1 1 Type III flagellar switch regulator (C-ring) FliN C-term Ribosomal_S21e PF01249.18 EME68476.1 - 0.078 13.1 0.7 0.27 11.4 0.1 1.9 2 0 0 2 2 2 0 Ribosomal protein S21e TAL_FSA PF00923.19 EME68477.1 - 2.3e-60 204.4 0.1 6.3e-59 199.7 0.1 2.2 1 1 0 1 1 1 1 Transaldolase/Fructose-6-phosphate aldolase ALAD PF00490.21 EME68477.1 - 0.12 11.5 0.2 0.44 9.7 0.1 1.8 1 1 1 2 2 2 0 Delta-aminolevulinic acid dehydratase PfkB PF00294.24 EME68478.1 - 4.6e-37 128.0 0.1 3e-18 66.1 0.2 2.0 2 0 0 2 2 2 2 pfkB family carbohydrate kinase LEM PF03020.15 EME68478.1 - 0.0011 18.5 0.0 0.0032 17.0 0.0 1.8 1 0 0 1 1 1 1 LEM domain Glyco_transf_4 PF13439.6 EME68478.1 - 0.0025 17.8 0.0 0.006 16.6 0.0 1.6 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Phos_pyr_kin PF08543.12 EME68478.1 - 0.0039 16.6 0.0 0.0059 16.0 0.0 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase V_ATPase_prox PF18274.1 EME68478.1 - 0.085 12.8 0.5 0.4 10.7 0.0 2.2 2 0 0 2 2 2 0 Vacuolar ATPase Subunit I N-terminal proximal lobe HATPase_c PF02518.26 EME68479.1 - 6.8e-20 71.7 0.0 2.2e-19 70.0 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 EME68479.1 - 5.4e-10 39.2 1.4 1.2e-09 38.0 1.4 1.7 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HAMP PF00672.25 EME68479.1 - 3.1e-06 27.4 0.5 3.1e-06 27.4 0.5 2.5 2 0 0 2 2 2 1 HAMP domain 2CSK_N PF08521.10 EME68479.1 - 0.00062 19.9 0.0 0.0013 18.9 0.0 1.6 1 0 0 1 1 1 1 Two-component sensor kinase N-terminal PEP-utilisers_N PF05524.13 EME68479.1 - 0.00076 19.6 0.3 0.0019 18.4 0.3 1.6 1 0 0 1 1 1 1 PEP-utilising enzyme, N-terminal HATPase_c_2 PF13581.6 EME68479.1 - 0.013 15.4 0.0 0.053 13.5 0.0 2.0 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain Trans_reg_C PF00486.28 EME68480.1 - 6.8e-19 67.7 0.2 4.8e-18 65.0 0.1 2.0 2 0 0 2 2 2 1 Transcriptional regulatory protein, C terminal Response_reg PF00072.24 EME68480.1 - 1.9e-18 66.7 0.0 3e-18 66.0 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain RNase_E_G PF10150.9 EME68482.1 - 9.2e-95 317.1 0.6 1.3e-94 316.6 0.6 1.2 1 0 0 1 1 1 1 Ribonuclease E/G family S1 PF00575.23 EME68482.1 - 4.7e-05 23.7 0.5 0.00062 20.1 0.0 2.7 3 0 0 3 3 3 1 S1 RNA binding domain Lar_restr_allev PF14354.6 EME68482.1 - 0.11 12.8 0.0 0.59 10.5 0.0 2.3 1 0 0 1 1 1 0 Restriction alleviation protein Lar AMIN PF11741.8 EME68483.1 - 1.2e-06 28.5 0.0 4.7e-06 26.6 0.0 2.0 2 1 0 2 2 2 1 AMIN domain DUF3077 PF11275.8 EME68484.1 - 0.13 12.5 0.0 0.16 12.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3077) HTH_17 PF12728.7 EME68485.1 - 0.046 13.9 0.1 0.069 13.4 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Phage_integrase PF00589.22 EME68487.1 - 1.7e-27 96.3 0.0 2.6e-27 95.7 0.0 1.3 1 0 0 1 1 1 1 Phage integrase family Arm-DNA-bind_3 PF13356.6 EME68487.1 - 2e-16 60.1 0.3 2e-16 60.1 0.3 1.9 2 0 0 2 2 2 1 Arm DNA-binding domain Phage_int_SAM_3 PF14659.6 EME68487.1 - 0.0031 17.7 0.0 0.0058 16.9 0.0 1.4 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain DNA_methylase PF00145.17 EME68488.1 - 2.5e-54 184.9 0.0 6.8e-54 183.4 0.0 1.6 1 1 0 1 1 1 1 C-5 cytosine-specific DNA methylase Cons_hypoth95 PF03602.15 EME68488.1 - 0.0065 16.1 0.0 0.012 15.3 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_15 PF09445.10 EME68488.1 - 0.025 14.1 0.0 0.1 12.2 0.0 1.9 2 0 0 2 2 2 0 RNA cap guanine-N2 methyltransferase HAS-barrel PF09378.10 EME68490.1 - 0.015 15.4 0.0 0.02 15.1 0.0 1.2 1 0 0 1 1 1 0 HAS barrel domain MarR PF01047.22 EME68491.1 - 5.3e-13 48.7 0.1 2.1e-12 46.8 0.1 1.8 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.7 EME68491.1 - 2.2e-12 46.7 0.3 4.1e-12 45.8 0.3 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 EME68491.1 - 2.2e-06 28.0 0.1 3.8e-06 27.3 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_34 PF13601.6 EME68491.1 - 1.8e-05 24.8 0.0 2.8e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.19 EME68491.1 - 0.0013 18.5 0.0 0.0029 17.5 0.0 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB DprA_WH PF17782.1 EME68491.1 - 0.003 17.6 0.2 0.003 17.6 0.2 2.1 2 1 1 3 3 3 1 DprA winged helix domain HTH_IclR PF09339.10 EME68491.1 - 0.018 14.9 0.2 0.042 13.6 0.2 1.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_24 PF13412.6 EME68491.1 - 0.082 12.5 0.0 0.16 11.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Cupin_2 PF07883.11 EME68492.1 - 1.9e-28 98.0 0.7 2.1e-20 72.2 0.4 2.7 3 0 0 3 3 3 2 Cupin domain AraC_binding PF02311.19 EME68492.1 - 3.9e-09 36.5 0.0 2.4e-05 24.2 0.2 2.4 2 0 0 2 2 2 2 AraC-like ligand binding domain DMSP_lyase PF16867.5 EME68492.1 - 0.0001 22.0 0.2 0.00017 21.2 0.2 1.2 1 0 0 1 1 1 1 Dimethlysulfonioproprionate lyase Cupin_3 PF05899.12 EME68492.1 - 0.00022 20.8 0.2 0.25 11.0 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF861) Cupin_1 PF00190.22 EME68492.1 - 0.00023 20.8 0.0 0.42 10.2 0.0 2.5 2 0 0 2 2 2 2 Cupin ARD PF03079.14 EME68492.1 - 0.00092 19.4 0.1 0.0015 18.7 0.1 1.2 1 0 0 1 1 1 1 ARD/ARD' family Auxin_BP PF02041.16 EME68492.1 - 0.00096 18.8 0.0 0.25 11.0 0.0 2.3 2 0 0 2 2 2 2 Auxin binding protein CENP-C_C PF11699.8 EME68492.1 - 0.2 11.9 0.0 0.45 10.7 0.0 1.5 1 0 0 1 1 1 0 Mif2/CENP-C like FAA_hydrolase PF01557.18 EME68493.1 - 1.8e-51 174.9 0.0 2.2e-51 174.6 0.0 1.0 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family MreC PF04085.14 EME68493.1 - 0.18 11.7 0.0 0.63 9.9 0.0 1.8 2 0 0 2 2 2 0 rod shape-determining protein MreC GST_N_3 PF13417.6 EME68494.1 - 3e-16 59.6 0.0 6e-16 58.6 0.0 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.6 EME68494.1 - 6e-16 58.5 0.0 1e-15 57.8 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N PF02798.20 EME68494.1 - 9.6e-13 48.3 0.0 1.6e-12 47.6 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_C_2 PF13410.6 EME68494.1 - 0.0002 21.3 0.0 0.00055 19.9 0.0 1.8 2 0 0 2 2 2 1 Glutathione S-transferase, C-terminal domain GST_C_3 PF14497.6 EME68494.1 - 0.019 15.1 0.0 0.03 14.5 0.0 1.4 1 0 0 1 1 1 0 Glutathione S-transferase, C-terminal domain GST_N_4 PF17172.4 EME68494.1 - 0.073 13.8 0.0 0.12 13.1 0.0 1.4 1 0 0 1 1 1 0 Glutathione S-transferase N-terminal domain 4HBT PF03061.22 EME68495.1 - 2.2e-11 44.0 0.0 3.9e-11 43.1 0.0 1.4 1 1 0 1 1 1 1 Thioesterase superfamily 4HBT_2 PF13279.6 EME68495.1 - 6.8e-05 23.3 0.0 7.4e-05 23.2 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily FAD_binding_3 PF01494.19 EME68496.1 - 1.8e-11 43.9 0.0 5.7e-08 32.4 0.0 2.6 1 1 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.6 EME68496.1 - 1.8e-05 24.9 0.0 5e-05 23.4 0.0 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 EME68496.1 - 0.0015 17.8 0.0 0.0022 17.3 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 EME68496.1 - 0.01 15.1 0.0 0.017 14.4 0.0 1.4 1 0 0 1 1 1 0 Thi4 family NAD_binding_9 PF13454.6 EME68496.1 - 0.018 15.0 0.0 0.035 14.1 0.0 1.5 1 0 0 1 1 1 0 FAD-NAD(P)-binding SE PF08491.10 EME68496.1 - 0.028 13.5 0.0 0.059 12.4 0.0 1.5 2 0 0 2 2 2 0 Squalene epoxidase Lycopene_cycl PF05834.12 EME68496.1 - 0.046 12.8 0.0 0.064 12.3 0.0 1.2 1 0 0 1 1 1 0 Lycopene cyclase protein Pyr_redox_3 PF13738.6 EME68496.1 - 0.11 11.7 0.0 0.18 11.0 0.0 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 EME68496.1 - 0.14 11.7 0.0 0.77 9.3 0.0 2.5 1 1 0 1 1 1 0 FAD dependent oxidoreductase MarR PF01047.22 EME68497.1 - 1e-11 44.6 0.6 1.6e-11 43.9 0.6 1.3 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 EME68497.1 - 1.3e-08 34.6 0.1 2.2e-08 33.9 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 EME68497.1 - 6.7e-07 29.7 0.1 9e-07 29.3 0.1 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.19 EME68497.1 - 0.00028 20.7 0.0 0.0009 19.1 0.0 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 EME68497.1 - 0.0003 20.5 0.1 0.00048 19.9 0.1 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HxlR PF01638.17 EME68497.1 - 0.0027 17.5 0.1 0.0047 16.8 0.1 1.4 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_34 PF13601.6 EME68497.1 - 0.0033 17.6 0.0 0.006 16.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain TFIIE_alpha PF02002.17 EME68497.1 - 0.0034 17.2 0.1 0.0053 16.6 0.1 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit Penicillinase_R PF03965.16 EME68497.1 - 0.0072 16.7 1.2 0.016 15.6 1.2 1.7 1 1 0 1 1 1 1 Penicillinase repressor HTH_5 PF01022.20 EME68497.1 - 0.016 15.1 0.0 0.024 14.5 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 EME68497.1 - 0.042 13.9 0.2 0.075 13.1 0.2 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Ribosomal_L37e PF01907.19 EME68498.1 - 0.0077 16.4 1.0 0.011 15.9 1.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L37e FYDLN_acid PF09538.10 EME68498.1 - 0.0095 16.6 0.2 0.0096 16.6 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (FYDLN_acid) zf_UBZ PF18439.1 EME68498.1 - 0.14 11.8 0.1 0.14 11.8 0.1 1.9 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger HypA PF01155.19 EME68498.1 - 0.16 12.0 1.4 0.18 11.9 1.4 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA sCache_2 PF17200.4 EME68499.1 - 1.8e-12 47.3 0.1 2.3e-12 47.0 0.1 1.1 1 0 0 1 1 1 1 Single Cache domain 2 dCache_2 PF08269.11 EME68499.1 - 2.4e-10 40.1 0.0 3.3e-10 39.7 0.0 1.3 1 1 0 1 1 1 1 Cache domain Oxidored_FMN PF00724.20 EME68501.1 - 9.3e-42 143.5 0.0 1.5e-41 142.8 0.0 1.3 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family Pyr_redox_2 PF07992.14 EME68501.1 - 3.4e-21 75.7 2.0 5.7e-21 75.0 2.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 EME68501.1 - 1.7e-15 57.0 0.3 9.9e-09 35.3 0.1 2.6 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain DAO PF01266.24 EME68501.1 - 1.2e-12 48.1 4.9 0.0002 21.1 0.3 3.8 3 1 1 4 4 4 3 FAD dependent oxidoreductase Pyr_redox PF00070.27 EME68501.1 - 2.4e-12 47.3 2.9 8.1e-05 23.1 0.2 3.3 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 EME68501.1 - 1.1e-10 40.8 4.3 1.4e-07 30.6 0.5 2.3 2 0 0 2 2 2 2 HI0933-like protein FAD_binding_2 PF00890.24 EME68501.1 - 4.6e-09 35.9 2.5 2.1e-06 27.1 0.5 2.3 2 0 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.7 EME68501.1 - 1e-08 35.0 1.3 2.2e-07 30.6 0.3 2.3 2 0 0 2 2 2 1 FAD dependent oxidoreductase 3HCDH_N PF02737.18 EME68501.1 - 1.2e-07 31.8 0.5 0.0016 18.4 0.1 2.3 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 EME68501.1 - 2.9e-07 30.9 1.5 0.012 16.0 0.1 2.5 2 0 0 2 2 2 2 Putative NAD(P)-binding Pyr_redox_3 PF13738.6 EME68501.1 - 1.2e-06 28.0 3.3 0.0013 18.0 0.1 3.2 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 EME68501.1 - 1.2e-06 27.9 4.2 0.0026 17.1 0.3 2.3 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain TrkA_N PF02254.18 EME68501.1 - 5.9e-06 26.5 1.7 0.0033 17.7 0.1 2.9 3 0 0 3 3 2 2 TrkA-N domain Thi4 PF01946.17 EME68501.1 - 1e-05 24.9 2.6 0.035 13.4 0.3 2.5 2 1 0 2 2 2 2 Thi4 family UDPG_MGDP_dh_N PF03721.14 EME68501.1 - 1.1e-05 25.1 1.4 0.052 13.1 0.1 2.4 2 0 0 2 2 2 2 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain GIDA PF01134.22 EME68501.1 - 1.6e-05 24.2 1.8 4.9e-05 22.6 0.6 2.1 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_binding_3 PF01494.19 EME68501.1 - 3.4e-05 23.3 1.1 0.14 11.4 0.5 2.3 2 0 0 2 2 2 2 FAD binding domain Amino_oxidase PF01593.24 EME68501.1 - 6.5e-05 22.4 1.3 0.091 12.0 0.0 3.0 3 0 0 3 3 3 2 Flavin containing amine oxidoreductase XdhC_C PF13478.6 EME68501.1 - 0.00019 21.9 0.4 0.91 10.0 0.0 2.4 2 0 0 2 2 2 2 XdhC Rossmann domain Lycopene_cycl PF05834.12 EME68501.1 - 0.00038 19.6 1.9 0.031 13.3 0.1 2.2 2 0 0 2 2 2 1 Lycopene cyclase protein Shikimate_DH PF01488.20 EME68501.1 - 0.00086 19.4 0.7 5.3 7.1 0.0 3.3 2 1 1 3 3 3 1 Shikimate / quinate 5-dehydrogenase NAD_binding_9 PF13454.6 EME68501.1 - 0.0015 18.5 0.1 2.6 8.0 0.0 2.7 2 0 0 2 2 2 2 FAD-NAD(P)-binding NAD_Gly3P_dh_N PF01210.23 EME68501.1 - 0.0043 17.1 0.3 1.7 8.6 0.1 2.6 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Trp_halogenase PF04820.14 EME68501.1 - 0.013 14.4 0.9 0.32 9.8 0.2 2.1 2 0 0 2 2 2 0 Tryptophan halogenase 2-Hacid_dh_C PF02826.19 EME68501.1 - 0.025 14.0 0.6 6.7 6.0 0.1 2.3 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 EME68501.1 - 0.037 14.2 0.2 0.77 9.9 0.1 2.4 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.16 EME68501.1 - 0.048 13.3 2.3 0.62 9.7 0.1 2.6 3 0 0 3 3 3 0 Ketopantoate reductase PanE/ApbA DUF4147 PF13660.6 EME68501.1 - 0.06 12.9 0.1 11 5.5 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4147) F420_oxidored PF03807.17 EME68501.1 - 0.14 12.8 0.8 2.4 8.8 0.1 2.7 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Sacchrp_dh_NADP PF03435.18 EME68501.1 - 0.16 12.3 0.3 2.9 8.2 0.0 2.5 2 0 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain AMP-binding PF00501.28 EME68502.1 - 5.5e-74 249.3 0.0 6.6e-74 249.0 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 EME68502.1 - 2.9e-14 53.8 0.1 1.6e-13 51.4 0.0 2.4 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain GH3 PF03321.13 EME68502.1 - 0.012 14.4 0.0 2.3 7.0 0.0 2.2 2 0 0 2 2 2 0 GH3 auxin-responsive promoter DUF4147 PF13660.6 EME68502.1 - 0.15 11.6 0.0 0.25 10.9 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4147) Peripla_BP_6 PF13458.6 EME68503.1 - 3.1e-62 211.2 8.1 3.8e-62 210.9 8.1 1.0 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 EME68503.1 - 8.4e-27 94.1 0.0 9.7e-27 93.9 0.0 1.0 1 0 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.28 EME68503.1 - 6.9e-12 45.1 0.0 8.7e-12 44.8 0.0 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region LppC PF04348.13 EME68503.1 - 0.014 14.2 0.0 0.021 13.6 0.0 1.3 1 0 0 1 1 1 0 LppC putative lipoprotein ATP_sub_h PF10775.9 EME68503.1 - 0.18 11.8 0.0 0.34 10.9 0.0 1.4 1 0 0 1 1 1 0 ATP synthase complex subunit h BPD_transp_2 PF02653.16 EME68504.1 - 4.1e-45 154.0 38.4 5e-45 153.7 38.4 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 EME68505.1 - 6.8e-34 117.2 39.9 1e-33 116.7 39.9 1.2 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component ABC_tran PF00005.27 EME68506.1 - 8.9e-26 91.0 0.0 1.2e-25 90.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 EME68506.1 - 3.6e-05 23.7 0.6 0.0077 16.1 0.2 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system BCA_ABC_TP_C PF12399.8 EME68506.1 - 0.00043 20.1 0.0 0.00089 19.1 0.0 1.6 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter SMC_N PF02463.19 EME68506.1 - 0.0015 18.0 0.1 0.028 13.8 0.1 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 EME68506.1 - 0.0018 18.0 0.0 0.0039 16.9 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 EME68506.1 - 0.0037 17.2 0.0 0.0061 16.5 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_23 PF13476.6 EME68506.1 - 0.0041 17.6 0.1 0.0061 17.1 0.1 1.3 1 0 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.23 EME68506.1 - 0.008 16.3 0.0 0.019 15.1 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase ATP_bind_1 PF03029.17 EME68506.1 - 0.07 12.9 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_15 PF13175.6 EME68506.1 - 0.091 12.4 0.0 0.13 11.9 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain AAA_27 PF13514.6 EME68506.1 - 0.1 12.1 0.0 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 EME68506.1 - 0.11 12.8 0.0 0.21 12.0 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain Dynamin_N PF00350.23 EME68506.1 - 0.12 12.5 0.1 0.22 11.6 0.1 1.4 1 0 0 1 1 1 0 Dynamin family ABC_tran PF00005.27 EME68507.1 - 1.2e-33 116.6 0.0 5.3e-33 114.4 0.0 1.8 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 EME68507.1 - 1.5e-06 28.2 0.2 0.033 14.0 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 EME68507.1 - 0.00013 21.7 0.1 0.00025 20.7 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.6 EME68507.1 - 0.00028 20.5 0.3 0.037 13.6 0.3 2.5 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 EME68507.1 - 0.0005 20.0 0.1 0.00079 19.4 0.1 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 EME68507.1 - 0.0013 19.2 0.1 0.0017 18.8 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 EME68507.1 - 0.0033 17.7 0.3 0.061 13.6 0.3 2.1 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 EME68507.1 - 0.0057 16.6 0.2 1.5 8.7 0.1 2.1 2 0 0 2 2 2 1 NTPase SMC_N PF02463.19 EME68507.1 - 0.0088 15.5 0.0 0.25 10.7 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain MMR_HSR1 PF01926.23 EME68507.1 - 0.009 16.1 0.1 0.018 15.1 0.1 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase NACHT PF05729.12 EME68507.1 - 0.013 15.4 0.2 0.037 13.9 0.1 1.8 2 0 0 2 2 2 0 NACHT domain IstB_IS21 PF01695.17 EME68507.1 - 0.035 13.8 0.1 1.4 8.6 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein Mg_chelatase PF01078.21 EME68507.1 - 0.054 12.9 0.1 0.2 11.0 0.0 1.8 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI DUF815 PF05673.13 EME68507.1 - 0.12 11.5 0.1 0.19 10.9 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_30 PF13604.6 EME68507.1 - 0.13 11.9 0.2 0.43 10.3 0.2 1.8 1 1 0 1 1 1 0 AAA domain AAA_7 PF12775.7 EME68507.1 - 0.19 11.2 0.1 0.28 10.7 0.1 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region TrwB_AAD_bind PF10412.9 EME68507.1 - 0.21 10.5 0.3 0.37 9.6 0.3 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_23 PF13476.6 EME68507.1 - 0.26 11.8 0.1 0.36 11.3 0.1 1.2 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 EME68507.1 - 0.3 10.8 0.0 0.38 10.4 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain ADH_N PF08240.12 EME68508.1 - 8.8e-29 99.6 2.3 1.7e-28 98.7 2.3 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 EME68508.1 - 3.6e-14 52.9 0.1 5.9e-14 52.2 0.1 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ELFV_dehydrog PF00208.21 EME68508.1 - 0.11 12.3 0.2 0.17 11.6 0.2 1.3 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ADH_N PF08240.12 EME68509.1 - 2e-28 98.4 2.9 2e-28 98.4 2.9 1.7 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 EME68509.1 - 6.1e-17 61.8 0.1 1.1e-16 61.0 0.1 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.21 EME68509.1 - 1.4e-05 24.5 0.7 2.2e-05 23.9 0.7 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain UDPG_MGDP_dh_N PF03721.14 EME68509.1 - 0.0079 15.8 0.2 0.012 15.2 0.2 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain MoCF_biosynth PF00994.24 EME68509.1 - 0.0093 15.6 1.0 0.021 14.5 0.2 1.9 2 0 0 2 2 2 1 Probable molybdopterin binding domain TrkA_N PF02254.18 EME68509.1 - 0.016 15.5 0.8 0.027 14.7 0.1 1.7 2 0 0 2 2 2 0 TrkA-N domain AdoHcyase_NAD PF00670.21 EME68509.1 - 0.023 14.8 3.5 0.5 10.4 1.6 2.4 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain adh_short PF00106.25 EME68509.1 - 0.037 13.5 0.3 0.52 9.7 0.2 2.2 2 0 0 2 2 2 0 short chain dehydrogenase 3HCDH_N PF02737.18 EME68509.1 - 0.043 13.7 0.5 0.072 13.0 0.5 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Methyltransf_25 PF13649.6 EME68509.1 - 0.12 13.0 0.4 0.38 11.5 0.4 1.9 1 1 0 1 1 1 0 Methyltransferase domain DegT_DnrJ_EryC1 PF01041.17 EME68509.1 - 0.14 11.5 0.7 0.2 10.9 0.7 1.1 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family 2-Hacid_dh_C PF02826.19 EME68509.1 - 0.14 11.5 0.3 0.28 10.5 0.1 1.5 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Methyltransf_11 PF08241.12 EME68509.1 - 0.16 12.7 0.4 0.59 10.8 0.4 2.1 1 1 0 1 1 1 0 Methyltransferase domain MaoC_dehydratas PF01575.19 EME68510.1 - 1.3e-18 66.8 0.0 1.7e-18 66.4 0.0 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 EME68510.1 - 1.7e-06 28.2 0.0 3.4e-06 27.2 0.0 1.4 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase Ribosomal_L19 PF01245.20 EME68510.1 - 0.032 14.1 0.0 0.046 13.7 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein L19 4HBT PF03061.22 EME68510.1 - 0.045 14.1 0.0 0.083 13.3 0.0 1.5 1 0 0 1 1 1 0 Thioesterase superfamily FabA PF07977.13 EME68510.1 - 0.15 11.7 0.0 0.2 11.3 0.0 1.3 1 0 0 1 1 1 0 FabA-like domain ECH_1 PF00378.20 EME68511.1 - 3.2e-27 95.5 1.1 4.6e-27 94.9 1.1 1.2 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 EME68511.1 - 1.6e-13 50.9 1.6 2.8e-13 50.1 1.0 1.6 2 0 0 2 2 2 1 Enoyl-CoA hydratase/isomerase Usp PF00582.26 EME68512.1 - 8.4e-08 32.8 0.0 1.5e-07 32.0 0.0 1.4 1 0 0 1 1 1 1 Universal stress protein family GerE PF00196.19 EME68513.1 - 2.5e-10 39.7 0.0 4.4e-10 39.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 EME68513.1 - 0.00041 20.0 2.1 0.002 17.7 0.2 2.8 3 0 0 3 3 3 1 Sigma-70, region 4 TetR_C_24 PF17932.1 EME68514.1 - 1.2e-28 99.7 0.0 1.7e-28 99.1 0.0 1.2 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_N PF00440.23 EME68514.1 - 5.6e-14 51.7 0.0 1.3e-13 50.5 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_23 PF13384.6 EME68514.1 - 0.00027 20.6 0.2 0.0049 16.6 0.0 2.8 3 0 0 3 3 3 1 Homeodomain-like domain TetR_C_9 PF14514.6 EME68514.1 - 0.001 19.2 0.0 0.002 18.3 0.0 1.6 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain HTH_Tnp_1_2 PF13022.6 EME68514.1 - 0.0043 17.2 0.0 0.0068 16.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix of insertion element transposase Sigma70_r4_2 PF08281.12 EME68514.1 - 0.006 16.2 0.2 0.36 10.6 0.0 3.0 3 0 0 3 3 3 1 Sigma-70, region 4 HTH_22 PF13309.6 EME68514.1 - 0.0097 16.0 0.0 0.023 14.8 0.0 1.6 1 0 0 1 1 1 1 HTH domain HTH_10 PF04967.12 EME68514.1 - 0.051 13.4 0.0 0.11 12.3 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain HTH_3 PF01381.22 EME68514.1 - 0.079 13.0 0.0 0.21 11.7 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix Peripla_BP_6 PF13458.6 EME68515.1 - 1.3e-64 219.0 4.9 1.5e-64 218.8 4.9 1.0 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 EME68515.1 - 5.3e-23 81.6 0.1 1.5e-22 80.1 0.1 1.6 1 1 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.28 EME68515.1 - 1.4e-16 60.5 0.0 2.2e-16 59.9 0.0 1.2 1 0 0 1 1 1 1 Receptor family ligand binding region AMP-binding_C_2 PF14535.6 EME68516.1 - 1.3e-24 86.3 0.0 3e-24 85.2 0.0 1.6 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 EME68516.1 - 1.8e-15 56.5 0.2 3.8e-15 55.4 0.2 1.5 1 1 0 1 1 1 1 AMP-binding enzyme TPP_enzyme_C PF02775.21 EME68517.1 - 2.8e-19 69.4 0.1 6.6e-19 68.2 0.2 1.6 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Fer4_6 PF12837.7 EME68517.1 - 2.5e-10 39.9 35.2 5.4e-06 26.3 1.6 5.1 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_11 PF13247.6 EME68517.1 - 1.2e-08 35.0 6.3 1.2e-08 35.0 6.3 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 EME68517.1 - 3.5e-07 30.3 29.1 6.9e-05 22.9 7.6 3.6 2 1 2 4 4 4 4 4Fe-4S dicluster domain Fer4_10 PF13237.6 EME68517.1 - 1.4e-06 28.3 26.6 1.2e-05 25.4 9.7 3.2 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 EME68517.1 - 4.6e-06 27.1 29.8 0.069 13.8 14.8 4.3 1 1 4 5 5 5 5 4Fe-4S dicluster domain Fer4 PF00037.27 EME68517.1 - 0.0026 17.5 3.3 0.0026 17.5 3.3 6.0 6 1 0 6 6 6 2 4Fe-4S binding domain Fer4_2 PF12797.7 EME68517.1 - 0.0046 17.0 35.8 0.011 15.7 2.5 5.0 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_21 PF14697.6 EME68517.1 - 0.94 9.7 28.6 0.87 9.8 7.8 3.3 2 2 0 3 3 3 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 EME68517.1 - 1.8 9.6 24.7 1.8 9.6 1.6 4.5 3 1 1 4 4 4 0 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 EME68517.1 - 2.7 8.7 37.3 0.57 10.8 3.1 5.3 5 0 0 5 5 5 0 4Fe-4S binding domain Pyr_redox_2 PF07992.14 EME68518.1 - 1.5e-55 188.5 0.0 2e-55 188.1 0.0 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 EME68518.1 - 1.4e-14 54.4 0.0 7.8e-14 52.0 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 EME68518.1 - 2e-06 27.6 6.7 0.0084 15.7 1.1 2.9 2 1 1 3 3 3 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 EME68518.1 - 1.1e-05 25.6 0.1 3.4e-05 24.0 0.1 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.21 EME68518.1 - 1.1e-05 24.8 0.2 0.00015 21.2 0.1 2.4 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox_3 PF13738.6 EME68518.1 - 3e-05 23.4 0.0 0.014 14.7 0.0 2.3 1 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 EME68518.1 - 3.7e-05 23.0 4.7 0.00074 18.7 1.3 2.3 2 0 0 2 2 2 2 FAD binding domain FAD_binding_3 PF01494.19 EME68518.1 - 0.00026 20.3 0.4 0.00058 19.2 0.2 1.6 2 0 0 2 2 2 1 FAD binding domain NAD_binding_9 PF13454.6 EME68518.1 - 0.00076 19.5 0.6 0.49 10.4 0.0 3.5 3 1 1 4 4 3 1 FAD-NAD(P)-binding HI0933_like PF03486.14 EME68518.1 - 0.0012 17.6 0.0 0.04 12.6 0.3 2.7 3 0 0 3 3 3 1 HI0933-like protein 3HCDH_N PF02737.18 EME68518.1 - 0.0016 18.4 0.1 0.0023 17.8 0.1 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K_oxygenase PF13434.6 EME68518.1 - 0.002 17.4 0.0 0.0028 16.9 0.0 1.2 1 0 0 1 1 1 1 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_7 PF13241.6 EME68518.1 - 0.0054 17.2 0.0 0.02 15.3 0.0 2.0 2 0 0 2 2 2 1 Putative NAD(P)-binding Amino_oxidase PF01593.24 EME68518.1 - 0.0066 15.8 0.2 0.12 11.7 0.3 2.6 3 0 0 3 3 3 1 Flavin containing amine oxidoreductase GIDA PF01134.22 EME68518.1 - 0.01 15.0 0.8 0.11 11.6 0.2 2.6 4 0 0 4 4 4 1 Glucose inhibited division protein A TrkA_N PF02254.18 EME68518.1 - 0.031 14.5 0.0 0.12 12.6 0.0 2.0 2 0 0 2 2 2 0 TrkA-N domain Thi4 PF01946.17 EME68518.1 - 0.042 13.1 0.1 0.077 12.2 0.1 1.3 1 0 0 1 1 1 0 Thi4 family UDPG_MGDP_dh_N PF03721.14 EME68518.1 - 0.058 13.0 0.0 0.09 12.3 0.0 1.2 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Rubredoxin_C PF18267.1 EME68518.1 - 0.087 12.8 0.0 0.24 11.3 0.0 1.8 2 0 0 2 2 2 0 Rubredoxin NAD+ reductase C-terminal domain Reductase_C PF14759.6 EME68518.1 - 0.12 13.0 0.1 0.57 10.8 0.0 2.3 2 0 0 2 2 1 0 Reductase C-terminal POR_N PF01855.19 EME68519.1 - 3.7e-48 164.3 0.0 6.7e-48 163.4 0.0 1.4 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 EME68519.1 - 8.8e-26 90.2 0.1 1.6e-25 89.4 0.1 1.4 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 EME68519.1 - 0.003 17.4 0.1 0.0062 16.4 0.1 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain Fer4 PF00037.27 EME68520.1 - 2.2e-10 39.9 18.2 1.9e-06 27.4 4.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 EME68520.1 - 1.6e-08 34.6 11.4 2.1e-08 34.2 11.4 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 EME68520.1 - 1.4e-06 29.1 14.2 0.0013 19.7 3.3 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 EME68520.1 - 8e-06 25.7 12.1 0.0011 18.9 2.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 EME68520.1 - 1.5e-05 25.1 15.3 0.00031 20.9 16.9 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 EME68520.1 - 2.8e-05 24.6 29.6 0.0011 19.6 17.4 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 EME68520.1 - 0.00016 21.7 15.8 0.0091 16.1 16.4 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 EME68520.1 - 0.00026 20.9 16.5 0.012 15.7 3.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 EME68520.1 - 0.0091 16.5 16.1 0.018 15.6 3.0 2.6 1 1 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_4 PF12800.7 EME68520.1 - 0.03 14.8 17.3 0.25 12.0 4.0 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.6 EME68520.1 - 0.13 13.0 17.3 0.17 12.6 2.7 2.9 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_17 PF13534.6 EME68520.1 - 0.18 12.4 14.9 0.19 12.3 3.9 2.2 1 1 3 4 4 4 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 EME68520.1 - 1.1 10.2 16.5 0.31 11.9 3.2 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 EME68520.1 - 2.7 8.5 16.9 0.73 10.3 4.1 2.2 1 1 2 3 3 3 0 4Fe-4S dicluster domain POR PF01558.18 EME68521.1 - 8.3e-32 110.7 0.0 9.8e-32 110.4 0.0 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase NrfD PF03916.14 EME68522.1 - 0.00013 21.7 0.6 0.00022 21.0 0.6 1.3 1 0 0 1 1 1 1 Polysulphide reductase, NrfD DmsC PF04976.12 EME68522.1 - 0.00039 20.0 2.1 0.00055 19.5 2.1 1.1 1 0 0 1 1 1 1 DMSO reductase anchor subunit (DmsC) Fer4_11 PF13247.6 EME68523.1 - 2.6e-16 59.6 18.4 1.2e-12 47.8 4.8 3.5 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 EME68523.1 - 8.7e-14 51.9 21.5 2.2e-06 28.1 6.1 3.2 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 EME68523.1 - 1.2e-10 41.4 17.9 3.9e-05 23.7 2.2 2.7 2 2 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 EME68523.1 - 1.8e-08 34.3 24.7 2.9e-05 24.1 4.4 3.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.27 EME68523.1 - 6.9e-08 32.0 2.9 6.9e-08 32.0 2.9 5.2 6 0 0 6 6 6 2 4Fe-4S binding domain Fer4_17 PF13534.6 EME68523.1 - 4e-07 30.5 17.3 0.00013 22.4 2.2 3.8 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 EME68523.1 - 8.2e-07 28.8 3.4 8.2e-07 28.8 3.4 4.5 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_2 PF12797.7 EME68523.1 - 1.4e-06 28.1 12.7 0.00016 21.6 2.3 4.4 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_8 PF13183.6 EME68523.1 - 4.7e-05 23.8 21.4 0.0018 18.7 1.9 3.2 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 EME68523.1 - 0.00029 21.7 22.0 0.64 11.0 5.0 4.5 4 1 0 4 4 4 3 4Fe-4S double cluster binding domain Fer4_3 PF12798.7 EME68523.1 - 0.00091 20.0 37.9 0.19 12.8 4.8 4.6 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_15 PF13459.6 EME68523.1 - 0.0071 17.1 3.5 0.0071 17.1 3.5 3.3 3 1 0 3 3 3 2 4Fe-4S single cluster domain Fer4_21 PF14697.6 EME68523.1 - 0.012 15.7 30.3 0.02 15.0 10.9 3.4 2 2 1 3 3 3 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 EME68523.1 - 0.035 14.6 33.7 0.062 13.8 2.4 4.7 5 0 0 5 5 5 0 4Fe-4S binding domain Fer4_13 PF13370.6 EME68523.1 - 0.19 12.3 0.4 0.19 12.3 0.4 3.6 3 0 0 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I FdhD-NarQ PF02634.15 EME68524.1 - 3.9e-76 255.8 0.5 4.6e-76 255.6 0.5 1.0 1 0 0 1 1 1 1 FdhD/NarQ family PriCT_1 PF08708.11 EME68524.1 - 0.14 11.9 0.0 0.26 11.0 0.0 1.4 1 0 0 1 1 1 0 Primase C terminal 1 (PriCT-1) Molybdopterin PF00384.22 EME68525.1 - 1.8e-27 96.4 0.0 9.2e-26 90.8 0.0 2.8 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 EME68525.1 - 3.7e-08 33.4 0.0 1.6e-07 31.4 0.0 1.9 2 0 0 2 2 2 1 Molydopterin dinucleotide binding domain Type_III_YscG PF09477.10 EME68525.1 - 0.17 12.0 0.0 19 5.4 0.0 2.4 2 0 0 2 2 2 0 Bacterial type II secretion system chaperone protein (type_III_yscG) SWM_repeat PF13753.6 EME68526.1 - 0.01 16.0 0.0 0.015 15.5 0.0 1.2 1 0 0 1 1 1 1 Putative flagellar system-associated repeat Tudor_1_RapA PF18339.1 EME68526.1 - 0.21 11.5 0.8 1.2 9.1 0.0 2.4 2 1 1 3 3 3 0 RapA N-terminal Tudor like domain 1 CHASE PF03924.13 EME68527.1 - 4.3e-38 131.1 0.0 9e-38 130.1 0.0 1.5 1 0 0 1 1 1 1 CHASE domain PAS_3 PF08447.12 EME68527.1 - 5.7e-34 116.3 0.1 1.1e-20 73.8 0.1 3.3 3 0 0 3 3 3 2 PAS fold HATPase_c PF02518.26 EME68527.1 - 9e-26 90.6 0.0 1.8e-25 89.7 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 EME68527.1 - 2.7e-23 82.2 0.0 2.2e-14 53.6 0.0 3.7 3 0 0 3 3 3 2 PAS domain Response_reg PF00072.24 EME68527.1 - 1.4e-21 76.8 0.0 2.9e-21 75.7 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain PAS PF00989.25 EME68527.1 - 4.1e-21 75.1 0.0 4.7e-09 36.2 0.0 3.5 3 0 0 3 3 3 3 PAS fold PAS_4 PF08448.10 EME68527.1 - 7e-19 68.1 2.5 1.2e-09 38.4 0.0 4.6 5 0 0 5 5 5 3 PAS fold PAS_8 PF13188.7 EME68527.1 - 4e-12 45.8 0.0 9.4e-07 28.7 0.0 3.8 3 0 0 3 3 3 3 PAS domain HisKA PF00512.25 EME68527.1 - 1.8e-10 40.7 0.2 2.4e-09 37.1 0.0 2.9 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_11 PF14598.6 EME68527.1 - 0.059 13.5 0.0 1.8 8.7 0.0 2.9 4 0 0 4 4 4 0 PAS domain PAS_12 PF18095.1 EME68527.1 - 0.11 12.1 0.0 0.58 9.8 0.0 2.1 3 0 0 3 3 3 0 UPF0242 C-terminal PAS-like domain FixS PF03597.15 EME68527.1 - 6.8 6.5 8.0 0.44 10.3 0.2 2.6 2 0 0 2 2 2 0 Cytochrome oxidase maturation protein cbb3-type HD_5 PF13487.6 EME68528.1 - 1e-16 60.9 0.0 2.2e-16 59.9 0.0 1.5 1 0 0 1 1 1 1 HD domain HD PF01966.22 EME68528.1 - 5.3e-16 59.0 0.1 1.1e-15 57.9 0.0 1.6 2 0 0 2 2 2 1 HD domain NIT PF08376.10 EME68529.1 - 4.3e-39 135.3 7.7 4.3e-39 135.3 7.7 3.7 2 1 2 4 4 3 1 Nitrate and nitrite sensing MCPsignal PF00015.21 EME68529.1 - 2.6e-29 102.2 41.4 2.9e-28 98.8 25.5 4.4 3 1 1 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain Hemerythrin PF01814.23 EME68529.1 - 1.2e-10 42.1 2.0 1.2e-10 42.1 2.0 2.5 2 1 0 2 2 2 1 Hemerythrin HHE cation binding domain HAMP PF00672.25 EME68529.1 - 8.4e-06 26.1 0.5 8.4e-06 26.1 0.5 4.4 6 0 0 6 6 4 1 HAMP domain baeRF_family10 PF18854.1 EME68529.1 - 0.0047 17.2 0.5 0.0047 17.2 0.5 3.3 3 1 0 3 3 3 1 Bacterial archaeo-eukaryotic release factor family 10 Laminin_I PF06008.14 EME68529.1 - 0.0085 15.8 1.9 0.0085 15.8 1.9 3.4 1 1 2 3 3 3 1 Laminin Domain I Molybdopterin PF00384.22 EME68529.1 - 0.01 14.8 0.3 0.014 14.4 0.3 1.3 1 0 0 1 1 1 0 Molybdopterin oxidoreductase AAA_13 PF13166.6 EME68529.1 - 0.015 13.9 3.4 0.024 13.3 3.4 1.2 1 0 0 1 1 1 0 AAA domain DUF948 PF06103.11 EME68529.1 - 0.1 12.9 24.6 0.98 9.7 1.9 5.8 2 1 3 5 5 5 0 Bacterial protein of unknown function (DUF948) DUF1664 PF07889.12 EME68529.1 - 0.11 12.6 8.2 3.8 7.5 0.2 3.6 2 2 0 2 2 2 0 Protein of unknown function (DUF1664) Pox_A14 PF05767.12 EME68529.1 - 0.12 12.6 0.3 0.28 11.3 0.3 1.6 1 0 0 1 1 1 0 Poxvirus virion envelope protein A14 DUF3450 PF11932.8 EME68529.1 - 0.29 10.4 9.5 0.41 9.9 2.5 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) COG2 PF06148.11 EME68529.1 - 0.64 10.1 4.1 1.6 8.8 0.3 3.1 2 1 1 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 zf-C4H2 PF10146.9 EME68529.1 - 0.65 10.3 1.8 3.7 7.8 0.0 2.7 3 0 0 3 3 3 0 Zinc finger-containing protein SEN1_N PF12726.7 EME68529.1 - 1.6 6.8 4.1 0.5 8.5 0.9 1.5 1 1 0 1 1 1 0 SEN1 N terminal HisKA_3 PF07730.13 EME68529.1 - 2.6 8.6 9.4 3.6 8.2 0.0 5.1 4 1 0 4 4 4 0 Histidine kinase DUF2277 PF10041.9 EME68529.1 - 7 7.1 8.4 4.1 7.8 0.8 3.3 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2277) DUF148 PF02520.17 EME68529.1 - 7.4 6.7 8.9 9.2 6.4 1.0 3.4 2 1 1 3 3 3 0 Domain of unknown function DUF148 AAA_16 PF13191.6 EME68530.1 - 3.6e-44 151.1 0.6 2.7e-43 148.3 0.0 2.8 3 0 0 3 3 3 1 AAA ATPase domain Pkinase PF00069.25 EME68530.1 - 3.3e-21 75.8 0.0 5.6e-21 75.1 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 EME68530.1 - 6.2e-13 48.6 0.0 1e-12 47.9 0.0 1.2 1 0 0 1 1 1 1 Protein tyrosine kinase GAF PF01590.26 EME68530.1 - 7.2e-11 42.9 1.0 1.4e-10 41.9 0.2 2.1 2 0 0 2 2 1 1 GAF domain GAF_2 PF13185.6 EME68530.1 - 2.3e-10 40.9 1.8 2.6e-09 37.5 0.2 2.9 2 0 0 2 2 2 1 GAF domain GAF_3 PF13492.6 EME68530.1 - 3e-05 24.4 1.3 0.00012 22.4 0.1 2.7 3 0 0 3 3 3 1 GAF domain DUF815 PF05673.13 EME68530.1 - 0.001 18.3 0.0 0.011 14.9 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF815) RsgA_GTPase PF03193.16 EME68530.1 - 0.0039 17.1 0.0 0.0079 16.1 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase Kinase-like PF14531.6 EME68530.1 - 0.0068 15.8 0.0 0.01 15.2 0.0 1.2 1 0 0 1 1 1 1 Kinase-like APH PF01636.23 EME68530.1 - 0.035 14.0 2.0 0.083 12.8 0.1 2.7 2 0 0 2 2 2 0 Phosphotransferase enzyme family Phage-MuB_C PF09077.11 EME68530.1 - 0.067 13.1 3.6 0.045 13.6 0.5 2.4 2 0 0 2 2 2 0 Mu B transposition protein, C terminal Sigma54_activat PF00158.26 EME68530.1 - 0.07 12.8 0.2 0.18 11.5 0.0 1.8 2 0 0 2 2 2 0 Sigma-54 interaction domain NACHT PF05729.12 EME68530.1 - 0.092 12.7 0.2 1.7 8.5 0.0 2.4 2 0 0 2 2 2 0 NACHT domain GED PF02212.18 EME68531.1 - 0.17 12.1 0.0 0.19 11.9 0.0 1.2 1 0 0 1 1 1 0 Dynamin GTPase effector domain NnrS PF05940.12 EME68532.1 - 4e-78 263.4 65.9 4.5e-78 263.2 65.9 1.0 1 0 0 1 1 1 1 NnrS protein ABC_tran PF00005.27 EME68533.1 - 1.3e-25 90.5 0.0 2.1e-25 89.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 EME68533.1 - 1.6e-06 28.2 0.5 0.00068 19.5 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 EME68533.1 - 0.0045 17.3 0.0 0.01 16.1 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 EME68533.1 - 0.0087 15.7 0.1 0.035 13.7 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA PF00004.29 EME68533.1 - 0.018 15.4 0.1 0.081 13.4 0.1 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 EME68533.1 - 0.036 14.0 0.0 0.068 13.1 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_29 PF13555.6 EME68533.1 - 0.036 13.8 0.1 0.061 13.1 0.1 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain SbcCD_C PF13558.6 EME68533.1 - 0.057 13.6 0.1 0.13 12.5 0.1 1.6 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit SMC_N PF02463.19 EME68533.1 - 0.066 12.6 0.1 3.1 7.2 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain ATPase PF06745.13 EME68533.1 - 0.082 12.2 0.1 7.3 5.9 0.0 2.1 2 0 0 2 2 2 0 KaiC ATP-synt_ab PF00006.25 EME68533.1 - 0.092 12.4 0.1 0.14 11.8 0.1 1.6 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_16 PF13191.6 EME68533.1 - 0.11 12.8 2.6 0.29 11.5 2.6 1.8 1 1 0 1 1 1 0 AAA ATPase domain Rad17 PF03215.15 EME68533.1 - 0.12 12.3 0.7 0.19 11.6 0.3 1.5 2 0 0 2 2 2 0 Rad17 P-loop domain AAA_30 PF13604.6 EME68533.1 - 0.18 11.5 0.4 1 9.0 0.4 2.0 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.14 EME68533.1 - 0.2 11.6 1.0 1.2 9.1 0.7 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) BPD_transp_1 PF00528.22 EME68534.1 - 2.7e-14 53.3 16.5 4.4e-14 52.6 16.5 1.4 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component NMT1_2 PF13379.6 EME68535.1 - 1.2e-07 31.7 0.0 1.9e-07 31.1 0.0 1.3 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.11 EME68535.1 - 1.3e-07 31.8 0.0 2.1e-07 31.1 0.0 1.4 1 0 0 1 1 1 1 NMT1/THI5 like NMT1_3 PF16868.5 EME68535.1 - 0.00069 19.1 0.0 0.0035 16.8 0.0 1.9 1 1 1 2 2 2 1 NMT1-like family SBP_bac_3 PF00497.20 EME68535.1 - 0.026 13.9 0.0 0.035 13.5 0.0 1.3 1 0 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 Phosphonate-bd PF12974.7 EME68535.1 - 0.069 12.7 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 ABC transporter, phosphonate, periplasmic substrate-binding protein DUF1581 PF07619.11 EME68535.1 - 0.11 12.6 0.0 0.23 11.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1581) TonB_dep_Rec PF00593.24 EME68536.1 - 2.2e-28 100.4 15.7 2.6e-28 100.1 15.7 1.1 1 0 0 1 1 1 1 TonB dependent receptor HATPase_c PF02518.26 EME68538.1 - 3.4e-23 82.3 0.0 5.9e-23 81.5 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 EME68538.1 - 2.7e-12 46.5 0.2 9e-12 44.9 0.2 2.0 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain CHASE5 PF17149.4 EME68538.1 - 1.7e-10 40.8 0.0 3.7e-10 39.7 0.0 1.6 1 0 0 1 1 1 1 Periplasmic sensor domain found in signal transduction proteins HATPase_c_2 PF13581.6 EME68538.1 - 7.5e-05 22.7 0.0 0.00022 21.2 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.6 EME68538.1 - 0.012 15.5 0.0 0.026 14.4 0.0 1.5 1 0 0 1 1 1 0 GHKL domain Mt_ATP-synt_B PF05405.14 EME68538.1 - 0.12 12.0 0.1 0.24 11.0 0.1 1.4 1 0 0 1 1 1 0 Mitochondrial ATP synthase B chain precursor (ATP-synt_B) Prominin PF05478.11 EME68538.1 - 0.22 9.4 0.0 1.2 7.0 0.0 1.9 2 0 0 2 2 2 0 Prominin Acetyltransf_4 PF13420.7 EME68539.1 - 2.8e-27 95.8 0.0 3.2e-27 95.6 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 EME68539.1 - 9.3e-13 48.4 0.2 1.2e-12 48.1 0.2 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.7 EME68539.1 - 1.4e-07 32.2 0.0 1.7e-07 32.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 EME68539.1 - 8.3e-06 25.8 0.0 1.1e-05 25.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 EME68539.1 - 1.7e-05 25.1 0.1 3.1e-05 24.3 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 EME68539.1 - 0.001 19.0 0.0 0.002 18.1 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_6 PF13480.7 EME68539.1 - 0.0012 19.0 1.5 0.0018 18.5 1.5 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain ESR1_C PF12743.7 EME68539.1 - 0.044 13.5 0.0 0.094 12.5 0.0 1.5 1 0 0 1 1 1 0 Oestrogen-type nuclear receptor final C-terminal DUF3265 PF11665.8 EME68539.1 - 0.086 13.1 1.3 0.29 11.4 0.6 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3265) FGase PF05013.12 EME68540.1 - 3.8e-71 239.7 0.0 4.7e-71 239.4 0.0 1.1 1 0 0 1 1 1 1 N-formylglutamate amidohydrolase TPPK_C PF12555.8 EME68541.1 - 0.033 14.3 1.5 0.064 13.3 1.5 1.5 1 0 0 1 1 1 0 Thiamine pyrophosphokinase C terminal zf-dskA_traR PF01258.17 EME68542.1 - 1.4e-11 44.1 2.9 2.5e-11 43.3 2.9 1.4 1 0 0 1 1 1 1 Prokaryotic dksA/traR C4-type zinc finger DZR PF12773.7 EME68542.1 - 0.003 17.6 2.0 0.0039 17.2 2.0 1.2 1 0 0 1 1 1 1 Double zinc ribbon Zn-ribbon_8 PF09723.10 EME68542.1 - 0.18 12.0 3.1 0.19 11.9 2.1 1.5 1 1 0 1 1 1 0 Zinc ribbon domain FCSD-flav_bind PF09242.11 EME68544.1 - 2.8e-24 85.3 0.2 8.3e-24 83.7 0.2 1.9 1 0 0 1 1 1 1 Flavocytochrome c sulphide dehydrogenase, flavin-binding Pyr_redox_2 PF07992.14 EME68544.1 - 1.1e-11 44.5 0.4 2.3e-09 36.9 0.1 2.4 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 EME68544.1 - 2.2e-06 27.8 0.4 0.0052 17.0 0.1 3.1 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain DAO PF01266.24 EME68544.1 - 6.7e-05 22.6 3.7 0.002 17.8 2.4 2.3 2 0 0 2 2 2 1 FAD dependent oxidoreductase AlaDh_PNT_C PF01262.21 EME68544.1 - 0.00037 19.9 3.5 0.37 10.0 1.0 2.5 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_9 PF13454.6 EME68544.1 - 0.00059 19.9 0.2 0.098 12.6 0.2 2.6 2 0 0 2 2 2 1 FAD-NAD(P)-binding Thi4 PF01946.17 EME68544.1 - 0.00064 19.0 0.4 0.0014 17.9 0.4 1.5 1 0 0 1 1 1 1 Thi4 family Trp_halogenase PF04820.14 EME68544.1 - 0.0044 15.9 0.3 0.0066 15.3 0.3 1.2 1 0 0 1 1 1 1 Tryptophan halogenase Cytochrome_CBB3 PF13442.6 EME68545.1 - 0.0055 17.0 0.0 0.0074 16.6 0.0 1.2 1 0 0 1 1 1 1 Cytochrome C oxidase, cbb3-type, subunit III Cytochrom_C PF00034.21 EME68545.1 - 0.022 15.9 0.0 0.027 15.6 0.0 1.2 1 0 0 1 1 1 0 Cytochrome c Rhodanese PF00581.20 EME68546.1 - 4.9e-11 43.1 0.0 1.2e-10 41.8 0.0 1.6 1 1 0 1 1 1 1 Rhodanese-like domain COX2 PF00116.20 EME68547.1 - 3.2e-51 172.2 0.1 4.5e-51 171.8 0.1 1.2 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, periplasmic domain COX2_TM PF02790.15 EME68547.1 - 1.2e-22 79.8 0.3 1.8e-22 79.3 0.3 1.2 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, transmembrane domain Cupredoxin_1 PF13473.6 EME68547.1 - 0.01 16.0 0.0 0.027 14.6 0.0 1.7 1 1 0 1 1 1 0 Cupredoxin-like domain Adeno_E3_CR2 PF02439.15 EME68547.1 - 0.022 14.5 0.0 0.05 13.4 0.0 1.5 1 0 0 1 1 1 0 Adenovirus E3 region protein CR2 MIG-14_Wnt-bd PF06664.12 EME68547.1 - 0.038 13.2 0.1 0.046 12.9 0.1 1.1 1 0 0 1 1 1 0 Wnt-binding factor required for Wnt secretion NPCC PF08058.11 EME68547.1 - 0.16 12.0 0.1 0.26 11.3 0.1 1.2 1 0 0 1 1 1 0 Nuclear pore complex component COX1 PF00115.20 EME68548.1 - 1.2e-157 525.2 69.5 1.6e-157 524.8 69.5 1.1 1 0 0 1 1 1 1 Cytochrome C and Quinol oxidase polypeptide I CtaG_Cox11 PF04442.14 EME68549.1 - 3e-52 176.7 0.0 3.4e-52 176.5 0.0 1.0 1 0 0 1 1 1 1 Cytochrome c oxidase assembly protein CtaG/Cox11 COX3 PF00510.18 EME68550.1 - 2.9e-87 292.8 23.5 3.3e-87 292.6 23.5 1.0 1 0 0 1 1 1 1 Cytochrome c oxidase subunit III DUF2975 PF11188.8 EME68550.1 - 0.05 13.5 0.2 0.05 13.5 0.2 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF2975) DUF4131 PF13567.6 EME68550.1 - 0.37 10.4 0.0 0.37 10.4 0.0 3.0 2 1 1 3 3 3 0 Domain of unknown function (DUF4131) EAL PF00563.20 EME68551.1 - 3.4e-65 219.9 0.0 4.5e-65 219.5 0.0 1.1 1 0 0 1 1 1 1 EAL domain Response_reg PF00072.24 EME68551.1 - 7.9e-09 35.7 0.0 1.9e-08 34.5 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain PG_isomerase_N PF18353.1 EME68551.1 - 0.042 14.2 0.1 10 6.5 0.0 2.5 2 0 0 2 2 2 0 Phosphoglucose isomerase N-terminal domain PAS PF00989.25 EME68552.1 - 8.7e-28 96.6 0.0 3.7e-15 55.9 0.0 2.7 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 EME68552.1 - 1.5e-22 79.8 0.0 5.4e-10 39.5 0.0 2.6 2 0 0 2 2 2 2 PAS domain HATPase_c PF02518.26 EME68552.1 - 6.5e-21 74.9 0.0 2.1e-20 73.3 0.0 1.9 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 EME68552.1 - 1.4e-19 70.4 1.5 1.6e-10 41.2 0.2 3.1 3 0 0 3 3 3 2 PAS fold Response_reg PF00072.24 EME68552.1 - 1e-13 51.4 0.0 2.3e-13 50.3 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain PAS_8 PF13188.7 EME68552.1 - 2.6e-13 49.6 0.0 2.3e-06 27.5 0.0 2.9 2 0 0 2 2 2 2 PAS domain HisKA PF00512.25 EME68552.1 - 2.9e-10 40.0 0.2 2e-09 37.3 0.0 2.5 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PilJ PF13675.6 EME68552.1 - 3.3e-09 36.8 0.7 9.9e-09 35.2 0.1 2.1 2 0 0 2 2 2 1 Type IV pili methyl-accepting chemotaxis transducer N-term PAS_3 PF08447.12 EME68552.1 - 1.1e-06 28.9 0.0 0.056 13.7 0.0 2.6 2 0 0 2 2 2 2 PAS fold PAS_7 PF12860.7 EME68552.1 - 2.5e-05 24.4 0.1 0.22 11.7 0.0 4.0 3 1 0 3 3 3 2 PAS fold HPTransfase PF10090.9 EME68552.1 - 0.00039 20.2 0.0 0.0016 18.2 0.0 2.1 1 0 0 1 1 1 1 Histidine phosphotransferase C-terminal domain Prok-JAB PF14464.6 EME68552.1 - 0.049 13.4 0.6 0.45 10.3 0.3 2.4 2 0 0 2 2 2 0 Prokaryotic homologs of the JAB domain Tmemb_55A PF09788.9 EME68553.1 - 0.0036 16.4 0.1 0.0045 16.1 0.1 1.2 1 0 0 1 1 1 1 Transmembrane protein 55A OAD_gamma PF04277.13 EME68553.1 - 0.026 15.1 0.0 0.03 14.9 0.0 1.1 1 0 0 1 1 1 0 Oxaloacetate decarboxylase, gamma chain TrbC PF04956.13 EME68553.1 - 0.1 12.8 0.2 0.12 12.5 0.2 1.1 1 0 0 1 1 1 0 TrbC/VIRB2 family MTS PF05175.14 EME68554.1 - 7.3e-14 51.7 0.0 1e-12 47.9 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.6 EME68554.1 - 1.5e-07 32.0 0.1 4.2e-07 30.6 0.1 1.8 1 1 0 1 1 1 1 Methyltransferase domain N6_Mtase PF02384.16 EME68554.1 - 1.8e-05 24.2 0.0 2.6e-05 23.7 0.0 1.1 1 0 0 1 1 1 1 N-6 DNA Methylase Methyltransf_23 PF13489.6 EME68554.1 - 5.7e-05 23.0 0.0 0.00012 21.9 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 EME68554.1 - 5.7e-05 23.0 0.0 7.5e-05 22.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 EME68554.1 - 0.0019 18.9 0.0 0.0045 17.7 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 EME68554.1 - 0.0019 18.8 0.1 0.0062 17.2 0.1 1.9 1 1 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.16 EME68554.1 - 0.0053 16.5 0.0 0.0085 15.9 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein PrmA PF06325.13 EME68554.1 - 0.0072 15.8 0.0 0.01 15.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) PCMT PF01135.19 EME68554.1 - 0.013 15.2 0.0 0.019 14.7 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) FmrO PF07091.11 EME68554.1 - 0.065 12.8 0.0 0.1 12.1 0.0 1.3 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) MetW PF07021.12 EME68554.1 - 0.26 10.9 0.0 0.39 10.3 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW polyprenyl_synt PF00348.17 EME68555.1 - 4.1e-72 242.3 0.0 5e-72 242.0 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase Epimerase PF01370.21 EME68557.1 - 8.8e-50 169.4 0.0 1e-49 169.2 0.0 1.0 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 EME68557.1 - 3.7e-49 167.9 0.0 4.4e-49 167.7 0.0 1.1 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 EME68557.1 - 2.7e-12 46.3 0.0 3.5e-12 45.9 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 EME68557.1 - 3.6e-10 39.4 0.0 4.3e-10 39.2 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain adh_short PF00106.25 EME68557.1 - 3.1e-05 23.5 0.0 0.00011 21.8 0.0 1.8 2 0 0 2 2 2 1 short chain dehydrogenase Polysacc_synt_2 PF02719.15 EME68557.1 - 8e-05 21.9 0.0 0.00055 19.1 0.0 1.9 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 EME68557.1 - 0.00013 21.2 0.2 0.0028 16.9 0.2 2.2 1 1 0 1 1 1 1 Male sterility protein KR PF08659.10 EME68557.1 - 0.00038 20.4 0.0 0.00096 19.1 0.0 1.7 1 1 0 1 1 1 1 KR domain MethyltransfD12 PF02086.15 EME68560.1 - 4e-13 49.7 0.0 5.1e-12 46.0 0.0 2.0 1 1 0 1 1 1 1 D12 class N6 adenine-specific DNA methyltransferase DSPc PF00782.20 EME68563.1 - 1e-06 28.6 0.0 1.4e-06 28.2 0.0 1.2 1 0 0 1 1 1 1 Dual specificity phosphatase, catalytic domain DMT_6 PF04342.12 EME68564.1 - 5.7e-46 155.0 6.3 6.5e-46 154.9 6.3 1.0 1 0 0 1 1 1 1 Putative member of DMT superfamily (DUF486) EamA PF00892.20 EME68564.1 - 0.0072 16.5 10.5 0.028 14.6 10.5 1.9 1 1 0 1 1 1 1 EamA-like transporter family TspO_MBR PF03073.15 EME68565.1 - 4.9e-43 146.4 15.1 5.9e-43 146.2 15.1 1.1 1 0 0 1 1 1 1 TspO/MBR family CcmF_C PF16327.5 EME68565.1 - 0.28 10.4 8.1 0.35 10.1 7.2 1.5 1 1 0 1 1 1 0 Cytochrome c-type biogenesis protein CcmF C-terminal DUF2786 PF10979.8 EME68566.1 - 8.1e-09 35.3 4.3 1.8e-08 34.1 4.3 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF2786) G-gamma PF00631.22 EME68566.1 - 0.21 11.6 0.9 0.4 10.7 0.2 1.8 2 0 0 2 2 2 0 GGL domain PLDc_2 PF13091.6 EME68567.1 - 2.4e-27 95.4 0.1 3e-27 95.1 0.1 1.1 1 0 0 1 1 1 1 PLD-like domain FAM83 PF07894.12 EME68567.1 - 3.8e-06 26.7 0.0 0.036 13.6 0.0 2.1 1 1 1 2 2 2 2 FAM83 A-H PLDc PF00614.22 EME68567.1 - 0.032 14.4 0.2 0.068 13.4 0.2 1.6 1 0 0 1 1 1 0 Phospholipase D Active site motif SpoVG PF04026.12 EME68568.1 - 0.00011 22.3 0.0 0.00013 22.1 0.0 1.2 1 0 0 1 1 1 1 SpoVG RNase_T PF00929.24 EME68569.1 - 1.3e-22 81.2 0.0 1.7e-22 80.8 0.0 1.2 1 0 0 1 1 1 1 Exonuclease Lon_2 PF13337.6 EME68571.1 - 2.4e-206 685.7 0.0 2.8e-206 685.4 0.0 1.0 1 0 0 1 1 1 1 Putative ATP-dependent Lon protease Lon_C PF05362.13 EME68571.1 - 9.1e-13 48.2 0.0 1.6e-12 47.4 0.0 1.4 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain ChlI PF13541.6 EME68571.1 - 0.00011 22.0 0.7 0.00034 20.4 0.0 2.1 2 0 0 2 2 2 1 Subunit ChlI of Mg-chelatase PglZ PF08665.12 EME68572.1 - 6e-67 225.1 0.0 1.2e-66 224.2 0.0 1.5 1 0 0 1 1 1 1 PglZ domain Phosphodiest PF01663.22 EME68572.1 - 0.0048 16.5 0.0 0.012 15.3 0.0 1.7 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.18 EME68572.1 - 0.023 14.1 0.1 0.048 13.0 0.1 1.4 1 0 0 1 1 1 0 Metalloenzyme superfamily HEPN_AbiU2 PF18734.1 EME68572.1 - 0.14 11.7 0.0 18 4.8 0.0 2.4 2 0 0 2 2 2 0 AbiU2 FAM83 PF07894.12 EME68573.1 - 0.11 12.1 0.0 0.18 11.4 0.0 1.3 1 0 0 1 1 1 0 FAM83 A-H NPP PF08384.10 EME68574.1 - 0.099 12.7 0.0 0.35 11.0 0.0 1.8 2 0 0 2 2 2 0 Pro-opiomelanocortin, N-terminal region DUF4298 PF14131.6 EME68575.1 - 0.11 12.5 0.0 2.1 8.4 0.0 2.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4298) DUF1788 PF08747.11 EME68576.1 - 1.4e-38 131.7 0.0 1.8e-38 131.3 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1788) DUF812 PF05667.11 EME68576.1 - 0.1 11.5 0.0 0.12 11.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF812) DUF1819 PF08849.11 EME68577.1 - 3.3e-52 177.0 0.0 3.7e-52 176.8 0.0 1.0 1 0 0 1 1 1 1 Putative inner membrane protein (DUF1819) DUF4391 PF14335.6 EME68580.1 - 0.0093 15.7 0.1 0.011 15.4 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4391) End3 PF12761.7 EME68580.1 - 0.12 12.5 0.2 0.15 12.2 0.2 1.2 1 0 0 1 1 1 0 Actin cytoskeleton-regulatory complex protein END3 Pox_A_type_inc PF04508.12 EME68580.1 - 0.15 12.0 1.2 0.35 10.8 1.2 1.7 1 0 0 1 1 1 0 Viral A-type inclusion protein repeat PCRF PF03462.18 EME68582.1 - 8.8e-59 198.6 1.2 8.8e-59 198.6 1.2 1.7 2 0 0 2 2 2 1 PCRF domain RF-1 PF00472.20 EME68582.1 - 1.3e-41 141.2 0.3 1.3e-41 141.2 0.3 1.8 2 0 0 2 2 2 1 RF-1 domain Metal_resist PF13801.6 EME68583.1 - 1.1e-29 103.1 9.2 1.1e-29 103.1 9.2 1.7 1 1 1 2 2 2 1 Heavy-metal resistance RskA PF10099.9 EME68584.1 - 0.017 15.4 4.0 0.022 15.1 4.0 1.1 1 0 0 1 1 1 0 Anti-sigma-K factor rskA Sigma70_r2 PF04542.14 EME68585.1 - 6.3e-20 70.7 2.9 1.2e-19 69.8 2.9 1.5 1 0 0 1 1 1 1 Sigma-70 region 2 Sigma70_r4_2 PF08281.12 EME68585.1 - 2e-11 43.4 0.5 4.2e-11 42.3 0.5 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 EME68585.1 - 7.1e-08 31.9 0.8 3.3e-07 29.7 0.1 2.5 3 0 0 3 3 3 1 Sigma-70, region 4 Sigma70_ECF PF07638.11 EME68585.1 - 0.032 14.1 1.6 1.2 9.0 1.6 2.1 1 1 0 1 1 1 0 ECF sigma factor zf-HC2 PF13490.6 EME68585.1 - 0.071 13.4 0.6 0.29 11.4 0.1 2.4 2 0 0 2 2 2 0 Putative zinc-finger EF-hand_7 PF13499.6 EME68586.1 - 1e-14 54.7 0.0 4.4e-09 36.7 0.0 2.4 2 0 0 2 2 2 2 EF-hand domain pair EF-hand_1 PF00036.32 EME68586.1 - 2.1e-11 42.5 0.1 5.7e-05 22.4 0.1 3.5 3 0 0 3 3 3 2 EF hand EF-hand_6 PF13405.6 EME68586.1 - 1.1e-10 40.5 0.5 0.047 13.6 0.0 3.6 3 0 0 3 3 3 3 EF-hand domain EF-hand_8 PF13833.6 EME68586.1 - 4.3e-10 39.3 0.2 0.0013 18.6 0.0 3.4 2 1 1 3 3 3 3 EF-hand domain pair EF-hand_5 PF13202.6 EME68586.1 - 1.5e-06 27.4 3.2 0.0021 17.5 0.4 2.9 3 0 0 3 3 3 2 EF hand SPARC_Ca_bdg PF10591.9 EME68586.1 - 0.09 13.1 0.0 3.1 8.1 0.0 2.6 2 1 1 3 3 3 0 Secreted protein acidic and rich in cysteine Ca binding region EF-hand_7 PF13499.6 EME68587.1 - 3e-07 30.8 0.2 0.0012 19.2 0.0 2.7 2 1 1 3 3 3 2 EF-hand domain pair EF-hand_1 PF00036.32 EME68587.1 - 4.5e-05 22.7 0.1 0.00012 21.4 0.1 1.7 1 0 0 1 1 1 1 EF hand EF-hand_6 PF13405.6 EME68587.1 - 0.0001 21.9 0.1 0.00043 20.0 0.1 2.1 1 0 0 1 1 1 1 EF-hand domain EF-hand_5 PF13202.6 EME68587.1 - 0.00016 21.0 0.1 0.00031 20.1 0.1 1.5 1 0 0 1 1 1 1 EF hand DUF2680 PF10925.8 EME68587.1 - 0.0034 17.4 0.0 0.015 15.3 0.0 2.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2680) EF-hand_8 PF13833.6 EME68587.1 - 0.0061 16.4 0.9 0.049 13.5 0.1 2.6 3 0 0 3 3 3 1 EF-hand domain pair COQ9 PF08511.11 EME68588.1 - 7.2e-31 105.8 0.5 1.4e-30 104.9 0.5 1.5 1 0 0 1 1 1 1 COQ9 TetR_C_23 PF17931.1 EME68588.1 - 0.085 13.0 0.1 0.14 12.3 0.1 1.4 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain Ribosomal_S21 PF01165.20 EME68589.1 - 1.6e-19 69.3 10.3 1.6e-19 69.3 10.3 1.7 1 1 1 2 2 2 1 Ribosomal protein S21 DUF4337 PF14235.6 EME68589.1 - 0.92 9.6 3.1 1.1 9.4 3.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4337) RF-1 PF00472.20 EME68589.1 - 1 9.3 6.9 1.3 9.0 6.9 1.1 1 0 0 1 1 1 0 RF-1 domain NIT PF08376.10 EME68590.1 - 6.6e-52 177.3 10.1 6.6e-52 177.3 10.1 3.1 2 1 0 3 3 2 1 Nitrate and nitrite sensing MCPsignal PF00015.21 EME68590.1 - 2.6e-28 99.0 25.1 2.6e-28 99.0 25.1 4.1 2 1 1 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 EME68590.1 - 5e-05 23.6 0.1 5e-05 23.6 0.1 4.1 5 1 0 5 5 5 1 HAMP domain DUF948 PF06103.11 EME68590.1 - 0.00061 20.0 20.8 0.77 10.1 2.4 5.5 4 1 2 6 6 6 3 Bacterial protein of unknown function (DUF948) Laminin_I PF06008.14 EME68590.1 - 0.0015 18.3 20.0 0.0047 16.7 3.3 3.6 1 1 1 3 3 3 2 Laminin Domain I DUF1664 PF07889.12 EME68590.1 - 0.023 14.7 12.3 1.4 9.0 3.1 3.9 3 2 1 4 4 4 0 Protein of unknown function (DUF1664) Dynactin_p22 PF07426.11 EME68590.1 - 0.084 12.7 1.0 0.22 11.3 0.2 2.0 2 0 0 2 2 2 0 Dynactin subunit p22 Mu-like_Pro PF10123.9 EME68590.1 - 0.088 12.3 0.1 0.088 12.3 0.1 3.3 2 1 1 3 3 3 0 Mu-like prophage I protein CENP-F_leu_zip PF10473.9 EME68590.1 - 0.19 11.7 4.7 0.6 10.1 0.2 3.1 2 1 1 3 3 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Jnk-SapK_ap_N PF09744.9 EME68590.1 - 1.4 9.1 6.7 27 4.9 4.1 3.0 2 1 0 2 2 2 0 JNK_SAPK-associated protein-1 Seryl_tRNA_N PF02403.22 EME68590.1 - 8.2 6.7 16.0 4.2 7.6 0.7 4.1 3 1 1 4 4 4 0 Seryl-tRNA synthetase N-terminal domain CCP_MauG PF03150.14 EME68591.1 - 5.9e-58 195.8 0.0 1.1e-52 178.7 0.0 2.1 2 0 0 2 2 2 2 Di-haem cytochrome c peroxidase Cytochrom_C PF00034.21 EME68591.1 - 2.1e-13 51.2 0.0 7.4e-09 36.6 0.0 2.4 2 0 0 2 2 2 2 Cytochrome c Cytochrome_C7 PF14522.6 EME68591.1 - 0.0049 16.8 0.1 1.4 9.0 0.0 2.3 2 0 0 2 2 2 2 Cytochrome c7 and related cytochrome c Cytochrome_CBB3 PF13442.6 EME68591.1 - 0.012 15.9 5.0 0.58 10.5 0.5 3.0 2 2 0 2 2 2 0 Cytochrome C oxidase, cbb3-type, subunit III DHOR PF06537.11 EME68591.1 - 0.014 14.0 0.2 0.57 8.7 0.0 2.5 3 0 0 3 3 3 0 Di-haem oxidoreductase, putative peroxidase Paired_CXXCH_1 PF09699.10 EME68591.1 - 0.019 14.7 0.4 3.2 7.6 0.0 2.4 2 0 0 2 2 2 0 Doubled CXXCH motif (Paired_CXXCH_1) DUF1924 PF09086.11 EME68591.1 - 0.063 13.6 0.1 2.8 8.4 0.0 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF1924) PNTB PF02233.16 EME68592.1 - 7.4e-200 664.7 23.5 8.4e-200 664.5 23.5 1.0 1 0 0 1 1 1 1 NAD(P) transhydrogenase beta subunit TPP_enzyme_M PF00205.22 EME68592.1 - 0.061 13.1 1.0 0.33 10.7 0.1 2.7 2 1 0 2 2 2 0 Thiamine pyrophosphate enzyme, central domain Ribosomal_L10 PF00466.20 EME68592.1 - 0.16 12.2 0.0 5.4 7.2 0.0 2.3 2 0 0 2 2 2 0 Ribosomal protein L10 AlaDh_PNT_C PF01262.21 EME68593.1 - 6.6e-73 244.5 4.5 1.1e-72 243.8 4.5 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain AlaDh_PNT_N PF05222.15 EME68593.1 - 8.9e-50 168.5 0.3 2.5e-49 167.1 0.1 1.8 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, N-terminal domain PNTB_4TM PF12769.7 EME68593.1 - 4.7e-35 119.9 5.8 2e-34 117.9 5.8 2.2 1 0 0 1 1 1 1 4TM region of pyridine nucleotide transhydrogenase, mitoch 2-Hacid_dh_C PF02826.19 EME68593.1 - 0.0043 16.4 0.8 6.1 6.2 0.1 3.2 2 1 1 3 3 3 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DUF3392 PF11872.8 EME68593.1 - 0.0054 17.0 2.4 0.013 15.7 2.4 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF3392) RGS12_usC PF16612.5 EME68593.1 - 0.089 13.2 0.3 0.16 12.4 0.3 1.3 1 0 0 1 1 1 0 C-terminal unstructured region of RGS12 DUF3108 PF11306.8 EME68594.1 - 2.6e-13 50.5 0.1 3.4e-13 50.1 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3108) Peptidase_M3 PF01432.20 EME68595.1 - 4.5e-31 108.6 0.0 3.3e-30 105.8 0.0 1.9 1 1 0 1 1 1 1 Peptidase family M3 Peptidase_M3_N PF08439.10 EME68595.1 - 7.1e-20 71.0 0.0 1.9e-19 69.7 0.0 1.8 1 0 0 1 1 1 1 Oligopeptidase F AMP-binding PF00501.28 EME68596.1 - 1.4e-96 323.7 0.0 1.7e-96 323.4 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 EME68596.1 - 0.11 13.4 0.0 0.38 11.8 0.0 2.0 2 0 0 2 2 2 0 AMP-binding enzyme C-terminal domain Response_reg PF00072.24 EME68597.1 - 1.2e-05 25.5 0.0 4.9e-05 23.5 0.0 1.9 2 0 0 2 2 2 1 Response regulator receiver domain GGDEF PF00990.21 EME68598.1 - 7.7e-39 133.0 0.0 1.1e-38 132.5 0.0 1.2 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain Response_reg PF00072.24 EME68598.1 - 6.5e-13 48.8 0.1 1.1e-12 48.0 0.1 1.4 1 0 0 1 1 1 1 Response regulator receiver domain TPR_7 PF13176.6 EME68599.1 - 0.00012 21.9 2.2 1.2 9.3 0.0 4.8 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_2 PF07719.17 EME68599.1 - 0.13 12.4 6.9 46 4.5 0.3 5.3 5 2 1 6 6 6 0 Tetratricopeptide repeat TPR_6 PF13174.6 EME68599.1 - 0.17 12.6 3.9 41 5.1 0.0 5.5 6 2 0 6 6 6 0 Tetratricopeptide repeat DUF1849 PF08904.11 EME68600.1 - 2.5e-76 256.5 0.0 2.8e-76 256.3 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1849) tRNA-synt_2 PF00152.20 EME68603.1 - 5.4e-92 308.2 0.0 6.6e-92 307.9 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 EME68603.1 - 4.2e-16 58.7 0.0 2.4e-15 56.3 0.0 2.2 3 0 0 3 3 3 1 OB-fold nucleic acid binding domain GAD PF02938.14 EME68603.1 - 5.8e-16 58.5 0.0 9.8e-16 57.8 0.0 1.4 1 0 0 1 1 1 1 GAD domain Response_reg PF00072.24 EME68604.1 - 0.0031 17.6 0.1 0.0052 16.9 0.1 1.6 1 1 0 1 1 1 1 Response regulator receiver domain GFO_IDH_MocA PF01408.22 EME68604.1 - 0.015 16.1 0.0 0.021 15.6 0.0 1.4 1 1 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold Ad_Cy_reg PF16701.5 EME68604.1 - 0.024 14.4 0.9 0.034 13.9 0.9 1.3 1 0 0 1 1 1 0 Adenylate cyclase regulatory domain PPR_2 PF13041.6 EME68604.1 - 0.05 13.8 0.0 0.088 13.0 0.0 1.4 1 0 0 1 1 1 0 PPR repeat family DNA_pol_A_exo1 PF01612.20 EME68605.1 - 8.5e-33 113.5 0.0 1.2e-32 113.0 0.0 1.2 1 0 0 1 1 1 1 3'-5' exonuclease HRDC PF00570.23 EME68605.1 - 1.7e-18 66.3 0.2 7.9e-18 64.2 0.1 2.2 2 0 0 2 2 2 1 HRDC domain CxxCxxCC PF03692.15 EME68606.1 - 4.5e-07 30.4 0.8 7.1e-07 29.8 0.8 1.3 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain DUF188 PF02639.14 EME68607.1 - 2.1e-46 156.8 0.0 2.4e-46 156.6 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized BCR, YaiI/YqxD family COG1671 PIN_9 PF18477.1 EME68607.1 - 0.11 12.8 0.0 0.27 11.6 0.0 1.6 2 0 0 2 2 2 0 PIN like domain HTH_17 PF12728.7 EME68609.1 - 1.7e-08 34.5 0.0 1.9e-08 34.4 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain Phage_AlpA PF05930.12 EME68609.1 - 0.047 13.5 0.0 0.063 13.1 0.0 1.3 1 0 0 1 1 1 0 Prophage CP4-57 regulatory protein (AlpA) LPAM_1 PF08139.12 EME68610.1 - 0.034 14.6 0.9 0.08 13.5 0.9 1.7 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site Phage_integrase PF00589.22 EME68611.1 - 1.1e-18 67.6 0.1 3.5e-18 66.0 0.0 1.8 2 0 0 2 2 2 1 Phage integrase family Arm-DNA-bind_3 PF13356.6 EME68611.1 - 2.1e-12 47.2 0.1 3.1e-11 43.5 0.1 2.4 2 0 0 2 2 2 1 Arm DNA-binding domain Phage_int_SAM_3 PF14659.6 EME68611.1 - 0.00039 20.6 0.0 0.00096 19.4 0.0 1.7 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Virulence_RhuM PF13310.6 EME68612.1 - 3.5e-103 344.3 3.1 4.6e-103 343.9 3.1 1.1 1 0 0 1 1 1 1 Virulence protein RhuM family Peptidase_M16_C PF05193.21 EME68612.1 - 0.022 14.8 0.0 1.7 8.6 0.0 2.2 2 0 0 2 2 2 0 Peptidase M16 inactive domain HTH_20 PF12840.7 EME68612.1 - 0.048 13.7 0.1 0.99 9.5 0.1 2.7 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Crp_2 PF13545.6 EME68612.1 - 0.13 12.3 0.3 1.4 8.9 0.0 2.3 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain DUF3958 PF13125.6 EME68612.1 - 1.7 8.9 5.2 0.49 10.6 0.6 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF3958) N6_Mtase PF02384.16 EME68613.1 - 1.3e-59 202.0 0.0 1.7e-59 201.6 0.0 1.1 1 0 0 1 1 1 1 N-6 DNA Methylase HsdM_N PF12161.8 EME68613.1 - 1e-19 71.5 0.0 6.4e-19 68.9 0.0 2.3 3 0 0 3 3 3 1 HsdM N-terminal domain MTS PF05175.14 EME68613.1 - 0.054 13.0 0.0 0.13 11.8 0.0 1.6 2 0 0 2 2 2 0 Methyltransferase small domain Bac_GDH PF05088.12 EME68613.1 - 0.24 8.8 0.0 0.36 8.3 0.0 1.1 1 0 0 1 1 1 0 Bacterial NAD-glutamate dehydrogenase Acetyltransf_3 PF13302.7 EME68614.1 - 5e-13 49.9 0.0 6.2e-13 49.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 EME68614.1 - 1.6e-05 25.1 0.0 2.2e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.7 EME68614.1 - 0.045 13.9 0.0 0.057 13.6 0.0 1.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain AAA_21 PF13304.6 EME68615.1 - 2.1e-15 57.4 0.2 4.6e-07 29.9 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 EME68615.1 - 1.4e-12 48.0 0.1 2.2e-06 27.7 0.0 2.0 2 0 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.19 EME68615.1 - 9.2e-07 28.5 0.3 0.0016 17.9 0.3 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 EME68615.1 - 1.6e-06 28.8 0.2 2.1e-06 28.4 0.2 1.1 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 EME68615.1 - 5.5e-05 22.8 0.2 0.00011 21.8 0.2 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 EME68615.1 - 8e-05 22.9 0.5 0.13 12.5 0.2 2.2 2 0 0 2 2 2 2 AAA domain ABC_tran PF00005.27 EME68615.1 - 0.00028 21.4 0.8 0.0011 19.5 0.7 1.9 2 0 0 2 2 2 1 ABC transporter NACHT PF05729.12 EME68615.1 - 0.019 14.9 0.5 0.04 13.8 0.2 1.7 2 0 0 2 2 2 0 NACHT domain RsgA_GTPase PF03193.16 EME68615.1 - 0.058 13.3 0.1 0.089 12.7 0.1 1.2 1 0 0 1 1 1 0 RsgA GTPase AAA PF00004.29 EME68615.1 - 0.084 13.3 0.1 1.3 9.5 0.1 2.3 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 EME68615.1 - 0.095 12.9 0.2 0.2 11.8 0.0 1.6 2 0 0 2 2 2 0 AAA domain DUF2813 PF11398.8 EME68615.1 - 0.11 11.7 0.2 3 7.0 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2813) AAA_5 PF07728.14 EME68615.1 - 0.15 12.1 0.1 0.29 11.1 0.1 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) ABC_ATPase PF09818.9 EME68615.1 - 0.15 10.8 0.1 0.2 10.4 0.1 1.1 1 0 0 1 1 1 0 Predicted ATPase of the ABC class DUF815 PF05673.13 EME68615.1 - 0.22 10.6 0.2 0.37 9.9 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_30 PF13604.6 EME68615.1 - 0.23 11.1 0.4 0.48 10.1 0.4 1.4 1 0 0 1 1 1 0 AAA domain PG_binding_1 PF01471.18 EME68617.1 - 3.1e-05 24.1 0.0 6e-05 23.2 0.0 1.5 1 0 0 1 1 1 1 Putative peptidoglycan binding domain HTH_3 PF01381.22 EME68618.1 - 9.7e-05 22.4 0.0 0.00014 21.8 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 EME68618.1 - 0.00019 21.7 0.0 0.00029 21.1 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain DUF5055 PF16478.5 EME68618.1 - 0.083 13.1 0.0 0.12 12.6 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF5055) HTH_19 PF12844.7 EME68618.1 - 0.11 12.5 0.0 0.21 11.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HipA_C PF07804.12 EME68619.1 - 7e-45 153.3 0.0 9.4e-45 152.9 0.0 1.1 1 0 0 1 1 1 1 HipA-like C-terminal domain Couple_hipA PF13657.6 EME68619.1 - 1.2e-05 25.8 0.0 4e-05 24.2 0.0 1.8 1 0 0 1 1 1 1 HipA N-terminal domain RHH_1 PF01402.21 EME68619.1 - 0.073 13.0 0.0 0.23 11.5 0.0 1.8 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family Death PF00531.22 EME68619.1 - 0.13 12.4 0.1 1.2 9.4 0.1 2.2 2 0 0 2 2 2 0 Death domain CotH PF08757.11 EME68619.1 - 0.19 11.2 0.0 0.28 10.7 0.0 1.2 1 0 0 1 1 1 0 CotH kinase protein BCS1_N PF08740.11 EME68620.1 - 5.9e-23 81.8 0.1 8e-23 81.4 0.1 1.2 1 0 0 1 1 1 1 BCS1 N terminal AAA PF00004.29 EME68620.1 - 3e-20 73.0 0.0 5.2e-20 72.2 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 EME68620.1 - 1e-05 26.0 0.3 5.4e-05 23.7 0.1 2.3 1 1 0 2 2 2 1 AAA ATPase domain AAA_11 PF13086.6 EME68620.1 - 0.00011 22.1 0.0 0.00018 21.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 EME68620.1 - 0.0006 20.1 0.0 0.032 14.5 0.0 2.7 3 0 0 3 3 3 1 AAA domain AAA_33 PF13671.6 EME68620.1 - 0.001 19.2 0.0 0.028 14.6 0.0 2.4 2 1 0 2 2 2 1 AAA domain DUF815 PF05673.13 EME68620.1 - 0.0025 17.0 0.0 0.0047 16.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_18 PF13238.6 EME68620.1 - 0.0027 18.2 0.0 0.0067 17.0 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.6 EME68620.1 - 0.0076 16.5 0.1 0.041 14.1 0.0 2.2 2 0 0 2 2 2 1 AAA domain NACHT PF05729.12 EME68620.1 - 0.0095 15.9 0.0 0.27 11.1 0.0 2.6 3 0 0 3 3 3 1 NACHT domain RuvB_N PF05496.12 EME68620.1 - 0.013 15.3 0.0 0.024 14.4 0.0 1.4 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain AAA_5 PF07728.14 EME68620.1 - 0.013 15.5 0.1 0.087 12.8 0.0 2.3 2 1 1 3 3 3 0 AAA domain (dynein-related subfamily) AAA_7 PF12775.7 EME68620.1 - 0.018 14.6 0.0 0.027 14.0 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_30 PF13604.6 EME68620.1 - 0.033 13.9 0.0 0.064 13.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 EME68620.1 - 0.051 13.3 0.0 1.2 8.8 0.0 2.6 3 0 0 3 3 3 0 IstB-like ATP binding protein AAA_3 PF07726.11 EME68620.1 - 0.075 12.9 0.0 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) TIP49 PF06068.13 EME68620.1 - 0.094 11.9 0.0 0.14 11.3 0.0 1.1 1 0 0 1 1 1 0 TIP49 P-loop domain ABC_tran PF00005.27 EME68620.1 - 0.097 13.2 0.0 0.17 12.4 0.0 1.4 1 0 0 1 1 1 0 ABC transporter RNA_helicase PF00910.22 EME68620.1 - 0.12 12.8 0.0 0.21 12.0 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_25 PF13481.6 EME68620.1 - 0.14 11.7 0.9 1.1 8.8 0.0 2.6 2 1 1 3 3 3 0 AAA domain TsaE PF02367.17 EME68620.1 - 0.15 12.0 0.0 0.28 11.2 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE RsgA_GTPase PF03193.16 EME68620.1 - 0.2 11.5 0.0 0.42 10.5 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase NACHT PF05729.12 EME68625.1 - 8.8e-06 25.7 0.3 0.00019 21.4 0.3 2.6 1 1 0 1 1 1 1 NACHT domain AAA_22 PF13401.6 EME68625.1 - 0.0068 16.7 0.0 0.053 13.8 0.0 2.5 2 0 0 2 2 2 1 AAA domain GDH_N PF12466.8 EME68625.1 - 0.012 15.7 0.1 0.52 10.5 0.0 3.1 3 0 0 3 3 3 0 Glutamate dehydrogenase N terminal HEAT_2 PF13646.6 EME68625.1 - 0.13 12.7 6.2 0.6 10.5 0.1 4.7 4 0 0 4 4 4 0 HEAT repeats Phage_Mu_Gam PF07352.12 EME68628.1 - 0.011 15.7 0.5 0.2 11.6 0.0 2.0 1 1 1 2 2 2 0 Bacteriophage Mu Gam like protein DUF4351 PF14261.6 EME68628.1 - 0.036 14.1 0.4 0.094 12.8 0.1 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4351) Tup_N PF08581.10 EME68628.1 - 0.073 13.4 1.0 0.27 11.6 1.0 1.8 1 1 0 1 1 1 0 Tup N-terminal Apolipoprotein PF01442.18 EME68628.1 - 0.087 12.7 2.6 0.2 11.5 0.5 1.8 1 1 0 2 2 2 0 Apolipoprotein A1/A4/E domain ZYG-11_interact PF05884.12 EME68628.1 - 0.12 11.7 0.1 0.14 11.5 0.1 1.1 1 0 0 1 1 1 0 Interactor of ZYG-11 HBB PF06777.11 EME68628.1 - 0.13 11.9 0.0 0.14 11.8 0.0 1.2 1 0 0 1 1 1 0 Helical and beta-bridge domain Nbl1_Borealin_N PF10444.9 EME68628.1 - 0.13 11.9 0.4 0.13 11.9 0.4 1.9 2 0 0 2 2 2 0 Nbl1 / Borealin N terminal Baculo_PEP_C PF04513.12 EME68628.1 - 0.2 11.7 0.4 0.51 10.4 0.4 1.5 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus PMT_2 PF13231.6 EME68629.1 - 3.5e-27 95.6 18.0 3.5e-27 95.6 18.0 2.3 2 0 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase HI0933_like PF03486.14 EME68630.1 - 5.5e-103 344.8 0.0 6.6e-103 344.6 0.0 1.1 1 0 0 1 1 1 1 HI0933-like protein NAD_binding_8 PF13450.6 EME68630.1 - 5.3e-05 23.4 0.1 5.3e-05 23.4 0.1 2.2 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 EME68630.1 - 0.00019 20.7 2.3 0.0002 20.6 0.5 1.9 3 0 0 3 3 3 1 FAD binding domain DAO PF01266.24 EME68630.1 - 0.00081 19.1 3.4 0.14 11.7 0.3 2.3 1 1 1 2 2 2 2 FAD dependent oxidoreductase Pyr_redox PF00070.27 EME68630.1 - 0.0013 19.2 0.0 0.008 16.7 0.0 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 EME68630.1 - 0.0018 17.6 0.1 0.01 15.1 0.1 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 EME68630.1 - 0.007 15.7 0.1 0.011 15.0 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain Thi4 PF01946.17 EME68630.1 - 0.05 12.8 0.0 0.082 12.1 0.0 1.3 1 0 0 1 1 1 0 Thi4 family AlaDh_PNT_C PF01262.21 EME68630.1 - 0.056 12.7 0.1 0.085 12.1 0.1 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Glu_dehyd_C PF16912.5 EME68630.1 - 0.073 12.6 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 Glucose dehydrogenase C-terminus NAD_binding_9 PF13454.6 EME68630.1 - 0.11 12.5 0.1 0.71 9.8 0.1 2.0 2 0 0 2 2 2 0 FAD-NAD(P)-binding GIDA PF01134.22 EME68630.1 - 0.33 10.0 3.1 0.19 10.8 0.7 1.7 2 0 0 2 2 2 0 Glucose inhibited division protein A Pyr_redox_3 PF13738.6 EME68630.1 - 0.41 9.9 0.5 0.56 9.4 0.5 1.1 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 EME68630.1 - 0.47 9.7 1.6 0.81 9.0 1.6 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase ECH_1 PF00378.20 EME68631.1 - 4.6e-17 62.2 0.0 6.9e-17 61.6 0.0 1.2 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase Formyl_trans_N PF00551.19 EME68631.1 - 4.8e-11 42.7 0.0 7.6e-11 42.1 0.0 1.3 1 0 0 1 1 1 1 Formyl transferase Formyl_trans_C PF02911.18 EME68631.1 - 1.4e-06 28.5 0.0 2.2e-06 27.8 0.0 1.3 1 0 0 1 1 1 1 Formyl transferase, C-terminal domain AIRS_C PF02769.22 EME68632.1 - 2.2e-25 89.6 0.4 3.7e-25 88.9 0.4 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 EME68632.1 - 1.1e-16 61.2 0.3 3.1e-16 59.8 0.3 1.7 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain HypD PF01924.16 EME68633.1 - 1.4e-156 521.0 0.0 1.6e-156 520.8 0.0 1.0 1 0 0 1 1 1 1 Hydrogenase formation hypA family K_channel_TID PF07941.11 EME68633.1 - 0.95 10.0 3.0 7.6 7.1 0.1 2.4 2 0 0 2 2 2 0 Potassium channel Kv1.4 tandem inactivation domain HupF_HypC PF01455.18 EME68634.1 - 1.4e-25 89.3 0.0 1.5e-25 89.1 0.0 1.0 1 0 0 1 1 1 1 HupF/HypC family HypF_C PF17788.1 EME68635.1 - 5.1e-25 88.1 1.5 8e-25 87.5 1.5 1.3 1 0 0 1 1 1 1 HypF Kae1-like domain Peptidase_M22 PF00814.25 EME68635.1 - 0.044 13.5 0.2 0.08 12.6 0.2 1.3 1 0 0 1 1 1 0 Glycoprotease family cobW PF02492.19 EME68636.1 - 1.5e-36 125.6 0.0 2e-36 125.2 0.0 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CbiA PF01656.23 EME68636.1 - 0.015 15.4 0.0 0.024 14.7 0.0 1.5 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain NACHT PF05729.12 EME68636.1 - 0.076 12.9 0.0 0.23 11.4 0.0 1.7 2 0 0 2 2 2 0 NACHT domain Zip PF02535.22 EME68636.1 - 0.081 12.1 5.7 0.1 11.8 5.7 1.1 1 0 0 1 1 1 0 ZIP Zinc transporter MobB PF03205.14 EME68636.1 - 0.11 12.4 0.0 0.11 12.4 0.0 2.1 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Zeta_toxin PF06414.12 EME68636.1 - 0.12 11.7 0.0 0.18 11.0 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin HypA PF01155.19 EME68637.1 - 2.6e-33 114.4 0.3 2.8e-33 114.3 0.3 1.0 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_9 PF14369.6 EME68637.1 - 4e-05 23.8 1.2 9e-05 22.6 1.2 1.6 1 0 0 1 1 1 1 zinc-ribbon DZR PF12773.7 EME68637.1 - 0.0041 17.1 0.2 0.0072 16.3 0.2 1.4 1 0 0 1 1 1 1 Double zinc ribbon DUF1451 PF07295.11 EME68637.1 - 0.017 15.2 0.2 0.025 14.6 0.2 1.2 1 0 0 1 1 1 0 Zinc-ribbon containing domain Anti-TRAP PF15777.5 EME68637.1 - 0.042 13.8 0.8 0.074 13.0 0.8 1.4 1 0 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein zf-TFIIB PF13453.6 EME68637.1 - 0.044 13.1 0.4 1.2 8.5 0.1 2.5 2 0 0 2 2 2 0 Transcription factor zinc-finger PSD4 PF07631.11 EME68637.1 - 0.052 14.1 0.0 0.066 13.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1592) DUF1272 PF06906.11 EME68637.1 - 0.063 13.4 0.4 0.1 12.7 0.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) NOB1_Zn_bind PF08772.11 EME68637.1 - 0.14 12.3 0.3 0.25 11.5 0.3 1.4 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like DUF2614 PF11023.8 EME68637.1 - 0.43 10.7 1.4 0.62 10.2 1.1 1.5 1 1 0 1 1 1 0 Zinc-ribbon containing domain NiFeSe_Hases PF00374.19 EME68638.1 - 1.7e-11 43.8 0.0 9.8e-07 28.0 0.0 2.6 2 1 0 2 2 2 2 Nickel-dependent hydrogenase HflK_N PF12221.8 EME68638.1 - 0.3 11.1 0.1 0.3 11.1 0.1 2.1 3 0 0 3 3 3 0 Bacterial membrane protein N terminal HupF_HypC PF01455.18 EME68639.1 - 1.4e-18 66.8 0.1 1.6e-18 66.6 0.1 1.0 1 0 0 1 1 1 1 HupF/HypC family DUF977 PF06163.11 EME68639.1 - 0.016 15.2 0.0 0.018 15.0 0.0 1.2 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) HycI PF01750.18 EME68640.1 - 1.4e-29 102.6 0.0 1.6e-29 102.3 0.0 1.1 1 0 0 1 1 1 1 Hydrogenase maturation protease NiFeSe_Hases PF00374.19 EME68641.1 - 8.3e-207 688.1 0.0 9.4e-207 687.9 0.0 1.0 1 0 0 1 1 1 1 Nickel-dependent hydrogenase NrfD PF03916.14 EME68642.1 - 2e-12 47.4 23.3 2e-12 47.4 23.3 2.1 1 1 1 2 2 2 1 Polysulphide reductase, NrfD SKG6 PF08693.10 EME68642.1 - 8.1 5.9 11.3 4.9 6.7 1.9 2.9 2 0 0 2 2 2 0 Transmembrane alpha-helix domain Fer4_11 PF13247.6 EME68643.1 - 1.6e-21 76.3 11.1 1.6e-21 76.3 11.1 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 EME68643.1 - 1.7e-17 63.7 18.0 1.1e-08 35.5 0.1 3.0 3 1 0 3 3 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 EME68643.1 - 9e-13 48.2 23.2 5.9e-06 26.4 10.4 3.1 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 EME68643.1 - 4.1e-12 45.6 34.5 2.1e-06 27.6 4.2 4.8 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4 PF00037.27 EME68643.1 - 3.2e-11 42.6 36.6 2.1e-06 27.3 4.3 4.8 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_2 PF12797.7 EME68643.1 - 1.6e-10 40.4 28.0 3.5e-05 23.6 2.4 4.5 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_10 PF13237.6 EME68643.1 - 2.8e-10 40.1 31.3 4e-06 26.8 11.0 3.4 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.7 EME68643.1 - 5.4e-09 35.9 30.1 0.00096 19.5 3.3 4.4 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_21 PF14697.6 EME68643.1 - 1.2e-06 28.6 25.8 3.5e-05 23.8 9.6 3.6 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 EME68643.1 - 2.9e-06 27.8 41.9 0.11 13.5 4.9 4.5 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_8 PF13183.6 EME68643.1 - 1e-05 25.9 26.5 0.0002 21.7 4.6 3.7 2 2 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 EME68643.1 - 2.8e-05 25.0 29.6 0.65 11.0 1.8 4.8 2 1 3 5 5 5 3 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 EME68643.1 - 0.00071 20.1 24.6 0.03 14.9 6.3 4.0 1 1 1 3 3 3 1 4Fe-4S dicluster domain UCR_Fe-S_N PF10399.9 EME68643.1 - 0.038 13.3 5.5 0.12 11.7 5.5 1.9 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Fer4_15 PF13459.6 EME68643.1 - 0.11 13.3 25.4 0.12 13.1 0.5 4.0 4 1 0 4 4 3 0 4Fe-4S single cluster domain Fer4_18 PF13746.6 EME68643.1 - 0.77 10.0 24.7 1 9.6 3.3 4.5 2 2 2 4 4 4 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 EME68643.1 - 5.1 8.0 18.9 4.2 8.3 2.4 4.0 3 1 1 4 4 4 0 4Fe-4S dicluster domain CytB6-F_Fe-S PF08802.10 EME68643.1 - 9.6 6.3 7.9 1.1 9.4 2.2 2.3 2 0 0 2 2 2 0 Cytochrome B6-F complex Fe-S subunit Oxidored_q6 PF01058.22 EME68644.1 - 1.1e-33 115.9 0.6 1.8e-33 115.1 0.6 1.4 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit NiFe_hyd_SSU_C PF14720.6 EME68644.1 - 1.1e-29 102.5 3.3 3.5e-29 101.0 1.3 2.2 2 0 0 2 2 2 1 NiFe/NiFeSe hydrogenase small subunit C-terminal TAT_signal PF10518.9 EME68644.1 - 0.00013 21.6 0.4 0.00013 21.6 0.4 3.8 3 1 0 3 3 3 1 TAT (twin-arginine translocation) pathway signal sequence DivIC PF04977.15 EME68647.1 - 1.3e-15 57.0 0.0 1.6e-15 56.6 0.0 1.0 1 0 0 1 1 1 1 Septum formation initiator Rrf2 PF02082.20 EME68649.1 - 1.3e-23 83.2 0.1 1.9e-23 82.6 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator HrcA_DNA-bdg PF03444.15 EME68649.1 - 0.12 12.0 0.0 0.68 9.6 0.1 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding GGDEF PF00990.21 EME68650.1 - 7.9e-51 172.0 0.1 1.7e-50 170.9 0.0 1.6 2 0 0 2 2 2 1 Diguanylate cyclase, GGDEF domain PAS_4 PF08448.10 EME68650.1 - 1.1e-33 115.7 2.9 2.7e-15 56.5 0.3 3.8 3 0 0 3 3 3 3 PAS fold PAS_9 PF13426.7 EME68650.1 - 8.7e-32 109.5 0.0 4.3e-15 55.8 0.0 4.5 4 0 0 4 4 4 3 PAS domain PAS PF00989.25 EME68650.1 - 5.6e-28 97.2 0.0 8.7e-12 45.0 0.0 3.6 3 0 0 3 3 3 3 PAS fold PAS_8 PF13188.7 EME68650.1 - 8.4e-20 70.4 0.1 1.6e-06 28.0 0.0 4.7 4 0 0 4 4 4 3 PAS domain PAS_3 PF08447.12 EME68650.1 - 3.8e-19 68.8 0.3 7.1e-10 39.0 0.0 3.2 4 0 0 4 4 4 2 PAS fold CHASE PF03924.13 EME68650.1 - 1.5e-11 44.6 0.0 3.7e-11 43.3 0.0 1.6 1 0 0 1 1 1 1 CHASE domain PAS_7 PF12860.7 EME68650.1 - 3.7e-06 27.1 0.1 0.042 14.0 0.0 3.6 3 2 0 3 3 3 2 PAS fold ABC_tran PF00005.27 EME68651.1 - 5.6e-45 153.2 0.0 2.8e-22 79.7 0.0 2.8 3 0 0 3 3 2 2 ABC transporter ABC_tran_Xtn PF12848.7 EME68651.1 - 8.2e-27 93.1 7.2 2.7e-26 91.4 4.1 2.4 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 EME68651.1 - 9.8e-14 51.9 0.3 0.0073 16.1 0.0 4.3 4 0 0 4 4 4 4 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 EME68651.1 - 2.4e-08 33.7 0.1 0.012 15.1 0.0 4.1 4 0 0 4 4 4 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 EME68651.1 - 2.3e-06 28.1 0.4 0.036 14.4 0.0 2.9 3 0 0 3 3 3 2 AAA ATPase domain AAA_23 PF13476.6 EME68651.1 - 6.9e-06 26.7 3.2 0.024 15.1 0.0 3.1 3 0 0 3 3 3 2 AAA domain AAA PF00004.29 EME68651.1 - 1.8e-05 25.2 0.5 0.048 14.1 0.0 2.9 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 EME68651.1 - 2.1e-05 24.2 0.0 0.21 11.3 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 EME68651.1 - 2.6e-05 24.2 0.2 0.15 12.0 0.1 2.3 2 0 0 2 2 2 2 RsgA GTPase AAA_18 PF13238.6 EME68651.1 - 5.2e-05 23.8 0.0 0.4 11.2 0.0 2.9 2 0 0 2 2 2 2 AAA domain AAA_30 PF13604.6 EME68651.1 - 6.9e-05 22.6 3.5 0.071 12.8 0.0 3.0 3 0 0 3 3 3 2 AAA domain MMR_HSR1 PF01926.23 EME68651.1 - 7.9e-05 22.7 0.0 0.04 14.0 0.0 2.5 2 0 0 2 2 2 1 50S ribosome-binding GTPase AAA_22 PF13401.6 EME68651.1 - 0.00015 22.0 0.0 0.65 10.3 0.0 2.6 2 0 0 2 2 2 2 AAA domain cobW PF02492.19 EME68651.1 - 0.00017 21.3 0.1 0.1 12.2 0.0 2.8 3 0 0 3 3 3 1 CobW/HypB/UreG, nucleotide-binding domain AAA_24 PF13479.6 EME68651.1 - 0.00051 19.8 0.1 0.48 10.1 0.1 2.4 2 0 0 2 2 2 2 AAA domain ATP-synt_ab PF00006.25 EME68651.1 - 0.00055 19.6 0.0 0.64 9.6 0.0 2.3 2 0 0 2 2 2 2 ATP synthase alpha/beta family, nucleotide-binding domain AAA_7 PF12775.7 EME68651.1 - 0.0007 19.2 0.5 0.22 11.0 0.0 2.6 3 0 0 3 3 3 1 P-loop containing dynein motor region AAA_33 PF13671.6 EME68651.1 - 0.0013 18.9 2.9 0.87 9.7 0.0 3.0 3 0 0 3 3 2 2 AAA domain AAA_28 PF13521.6 EME68651.1 - 0.0015 18.8 1.1 2.2 8.5 0.0 2.9 3 0 0 3 3 3 2 AAA domain AAA_13 PF13166.6 EME68651.1 - 0.0019 16.9 1.0 0.54 8.8 0.0 2.8 3 0 0 3 3 3 1 AAA domain NACHT PF05729.12 EME68651.1 - 0.0031 17.4 0.4 2.2 8.2 0.0 2.7 3 0 0 3 3 2 1 NACHT domain IstB_IS21 PF01695.17 EME68651.1 - 0.004 16.9 0.1 0.68 9.6 0.0 2.6 2 0 0 2 2 2 1 IstB-like ATP binding protein Roc PF08477.13 EME68651.1 - 0.0055 16.9 0.1 0.71 10.1 0.0 2.5 2 0 0 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase AAA_5 PF07728.14 EME68651.1 - 0.015 15.3 1.5 4.1 7.4 0.3 2.7 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) TsaE PF02367.17 EME68651.1 - 0.016 15.2 0.2 2.7 8.0 0.0 2.3 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE NB-ARC PF00931.22 EME68651.1 - 0.022 13.9 0.1 0.81 8.8 0.0 2.2 2 0 0 2 2 2 0 NB-ARC domain ABC_tran_CTD PF16326.5 EME68651.1 - 0.035 14.3 1.6 0.15 12.3 0.0 2.4 2 0 0 2 2 2 0 ABC transporter C-terminal domain AAA_14 PF13173.6 EME68651.1 - 0.035 14.1 0.1 11 6.0 0.0 2.6 2 0 0 2 2 2 0 AAA domain AAA_8 PF12780.7 EME68651.1 - 0.041 13.2 0.1 3.7 6.8 0.0 2.2 2 0 0 2 2 2 0 P-loop containing dynein motor region D4 SRPRB PF09439.10 EME68651.1 - 0.041 13.3 0.0 0.22 10.9 0.0 2.1 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit RNA_helicase PF00910.22 EME68651.1 - 0.045 14.2 0.1 16 5.9 0.0 2.5 2 0 0 2 2 2 0 RNA helicase MeaB PF03308.16 EME68651.1 - 0.045 12.7 0.3 6.7 5.6 0.0 2.3 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB NTPase_1 PF03266.15 EME68651.1 - 0.061 13.2 0.6 8.1 6.3 0.1 2.6 2 0 0 2 2 2 0 NTPase AAA_19 PF13245.6 EME68651.1 - 0.062 13.6 0.0 0.75 10.1 0.0 2.3 2 0 0 2 2 2 0 AAA domain RuvB_N PF05496.12 EME68651.1 - 0.072 12.8 0.0 0.99 9.1 0.0 2.4 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain AAA_25 PF13481.6 EME68651.1 - 0.079 12.5 0.4 4.7 6.7 0.1 2.6 2 0 0 2 2 2 0 AAA domain Ploopntkinase1 PF18748.1 EME68651.1 - 0.11 12.1 0.0 1.4 8.4 0.0 2.1 2 0 0 2 2 2 0 P-loop Nucleotide Kinase1 PduV-EutP PF10662.9 EME68651.1 - 0.13 12.1 0.3 1.2 8.9 0.1 2.2 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation SRP54 PF00448.22 EME68651.1 - 0.14 11.8 2.6 7.3 6.2 0.1 2.3 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_15 PF13175.6 EME68651.1 - 0.15 11.8 2.3 6.5 6.3 0.0 3.1 4 0 0 4 4 3 0 AAA ATPase domain Arf PF00025.21 EME68651.1 - 0.15 11.5 0.1 7.9 5.9 0.0 2.2 2 0 0 2 2 2 0 ADP-ribosylation factor family Zeta_toxin PF06414.12 EME68651.1 - 0.42 9.9 4.5 2 7.7 0.0 2.6 3 0 0 3 3 2 0 Zeta toxin DUF3584 PF12128.8 EME68651.1 - 0.79 7.2 10.6 1.2 6.6 0.0 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF3584) Thymidylate_kin PF02223.17 EME68651.1 - 7.2 6.2 6.2 5.2 6.7 0.0 2.9 3 0 0 3 3 3 0 Thymidylate kinase Response_reg PF00072.24 EME68652.1 - 8.3e-49 164.4 0.0 1.3e-26 92.9 0.0 2.6 2 0 0 2 2 2 2 Response regulator receiver domain HATPase_c PF02518.26 EME68652.1 - 5.8e-18 65.4 0.0 1.3e-17 64.3 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 EME68652.1 - 1.1e-08 34.9 1.9 1.7e-08 34.4 0.0 2.3 2 1 1 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.10 EME68652.1 - 2.7e-07 30.8 0.2 1.7e-06 28.3 0.1 2.3 2 0 0 2 2 2 1 PAS fold PAS_7 PF12860.7 EME68652.1 - 0.00033 20.8 1.1 0.0022 18.1 0.0 2.7 2 1 0 2 2 2 1 PAS fold PAS_9 PF13426.7 EME68652.1 - 0.0024 18.1 0.0 0.0066 16.7 0.0 1.8 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 EME68652.1 - 0.0044 17.0 0.0 0.015 15.3 0.0 2.0 2 1 0 2 2 2 1 PAS fold PAS_8 PF13188.7 EME68652.1 - 0.0075 16.3 0.0 0.021 14.8 0.0 1.8 1 0 0 1 1 1 1 PAS domain Pinin_SDK_memA PF04696.13 EME68652.1 - 1.9 8.6 6.8 0.29 11.2 0.5 2.1 2 0 0 2 2 2 0 pinin/SDK/memA/ protein conserved region Response_reg PF00072.24 EME68653.1 - 1.3e-26 92.9 0.1 3.6e-26 91.5 0.1 1.8 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.26 EME68653.1 - 1.2e-24 87.0 0.0 2.2e-24 86.1 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 EME68653.1 - 8.9e-21 73.7 0.3 2.7e-20 72.2 0.3 1.9 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.10 EME68653.1 - 1.9e-15 57.0 0.1 6.7e-15 55.3 0.1 2.0 1 0 0 1 1 1 1 PAS fold PAS PF00989.25 EME68653.1 - 6.2e-15 55.2 0.0 1.3e-14 54.1 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS_3 PF08447.12 EME68653.1 - 2e-11 44.0 0.0 4.4e-11 42.9 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 EME68653.1 - 4.3e-08 33.4 0.0 1e-07 32.2 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS_11 PF14598.6 EME68653.1 - 0.0014 18.8 0.0 0.0029 17.7 0.0 1.5 1 0 0 1 1 1 1 PAS domain PAS_8 PF13188.7 EME68653.1 - 0.0019 18.2 0.0 0.0054 16.7 0.0 1.8 1 0 0 1 1 1 1 PAS domain Secretin PF00263.21 EME68654.1 - 2.1e-37 128.4 0.3 3.8e-37 127.5 0.3 1.4 1 0 0 1 1 1 1 Bacterial type II and III secretion system protein T2SS-T3SS_pil_N PF13629.6 EME68654.1 - 7.8e-18 64.0 0.9 7.8e-18 64.0 0.9 2.3 2 0 0 2 2 2 1 Pilus formation protein N terminal region BON PF04972.17 EME68654.1 - 0.0022 18.3 1.2 0.0022 18.3 1.2 2.0 2 0 0 2 2 2 1 BON domain Pilus_CpaD PF09476.10 EME68655.1 - 5.8e-46 156.8 0.1 6.9e-46 156.5 0.1 1.0 1 0 0 1 1 1 1 Pilus biogenesis CpaD protein (pilus_cpaD) CBP_BcsQ PF06564.12 EME68656.1 - 8.8e-11 41.7 0.3 1.6e-10 40.9 0.3 1.5 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ AAA_31 PF13614.6 EME68656.1 - 2.2e-07 30.9 0.0 5.9e-06 26.3 0.0 2.2 1 1 0 1 1 1 1 AAA domain CbiA PF01656.23 EME68656.1 - 2.4e-06 27.6 0.0 4.3e-06 26.8 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 EME68656.1 - 0.00022 20.8 0.0 0.00039 19.9 0.0 1.4 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase Fer4_NifH PF00142.18 EME68656.1 - 0.00097 18.7 0.0 0.0023 17.4 0.0 1.7 1 1 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.11 EME68656.1 - 0.0071 15.7 0.2 0.12 11.6 0.1 2.5 2 1 0 2 2 2 1 ATPase MipZ T2SSE PF00437.20 EME68657.1 - 8.7e-81 271.0 0.2 1.2e-80 270.5 0.2 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein Mg_chelatase PF01078.21 EME68657.1 - 0.00014 21.3 0.0 0.00032 20.1 0.0 1.5 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_16 PF13191.6 EME68657.1 - 0.00032 21.1 0.0 0.00079 19.8 0.0 1.7 1 0 0 1 1 1 1 AAA ATPase domain ABC_tran PF00005.27 EME68657.1 - 0.00034 21.1 0.0 0.001 19.6 0.0 1.7 2 0 0 2 2 1 1 ABC transporter AAA_23 PF13476.6 EME68657.1 - 0.0011 19.5 0.0 0.0018 18.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 EME68657.1 - 0.0029 16.9 0.0 0.0048 16.2 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin AAA_29 PF13555.6 EME68657.1 - 0.0032 17.2 0.0 0.0063 16.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_19 PF13245.6 EME68657.1 - 0.0037 17.6 0.0 0.0081 16.5 0.0 1.7 1 0 0 1 1 1 1 AAA domain FtsK_SpoIIIE PF01580.18 EME68657.1 - 0.0059 16.0 0.1 0.016 14.6 0.0 1.7 2 0 0 2 2 2 1 FtsK/SpoIIIE family Sigma54_activat PF00158.26 EME68657.1 - 0.02 14.6 0.0 0.037 13.7 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain cobW PF02492.19 EME68657.1 - 0.021 14.4 0.0 0.047 13.3 0.0 1.6 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 EME68657.1 - 0.025 14.3 0.0 0.047 13.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 EME68657.1 - 0.026 14.8 0.0 0.043 14.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 EME68657.1 - 0.03 14.6 0.0 0.086 13.1 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_2 PF07724.14 EME68657.1 - 0.067 13.3 0.0 0.16 12.1 0.0 1.6 2 0 0 2 2 2 0 AAA domain (Cdc48 subfamily) SRP54 PF00448.22 EME68657.1 - 0.073 12.7 0.5 1.5 8.4 0.0 2.7 3 0 0 3 3 3 0 SRP54-type protein, GTPase domain AAA_7 PF12775.7 EME68657.1 - 0.079 12.5 0.0 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region TrwB_AAD_bind PF10412.9 EME68657.1 - 0.088 11.7 0.0 0.14 11.1 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain Septin PF00735.18 EME68657.1 - 0.093 12.0 0.0 0.15 11.3 0.0 1.2 1 0 0 1 1 1 0 Septin G-alpha PF00503.20 EME68657.1 - 0.12 11.5 0.0 0.18 10.9 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit Bac_DnaA PF00308.18 EME68657.1 - 0.14 12.0 0.0 0.27 11.1 0.0 1.4 1 0 0 1 1 1 0 Bacterial dnaA protein KAP_NTPase PF07693.14 EME68657.1 - 0.15 11.2 0.0 0.22 10.7 0.0 1.3 1 0 0 1 1 1 0 KAP family P-loop domain UvrD-helicase PF00580.21 EME68657.1 - 0.17 11.4 0.1 0.27 10.7 0.1 1.2 1 0 0 1 1 1 0 UvrD/REP helicase N-terminal domain T2SSF PF00482.23 EME68658.1 - 6e-20 71.5 2.7 6e-20 71.5 2.7 2.0 2 0 0 2 2 2 1 Type II secretion system (T2SS), protein F TRIQK PF15168.6 EME68658.1 - 0.43 10.5 0.0 0.43 10.5 0.0 1.8 2 0 0 2 2 2 0 Triple QxxK/R motif-containing protein family T2SSF PF00482.23 EME68659.1 - 9e-18 64.4 1.2 9e-18 64.4 1.2 2.4 2 0 0 2 2 2 1 Type II secretion system (T2SS), protein F LapA_dom PF06305.11 EME68659.1 - 9.9 6.1 15.4 6.7 6.6 0.3 4.1 4 0 0 4 4 4 0 Lipopolysaccharide assembly protein A domain TPR_19 PF14559.6 EME68660.1 - 2.2e-11 44.1 37.3 2.8e-05 24.5 0.6 4.1 1 1 4 5 5 5 4 Tetratricopeptide repeat TPR_2 PF07719.17 EME68660.1 - 1.3e-10 40.6 17.3 1.8e-05 24.5 0.0 6.1 6 0 0 6 6 6 3 Tetratricopeptide repeat TPR_17 PF13431.6 EME68660.1 - 3.1e-10 39.7 5.6 1.8e-05 24.8 0.5 4.3 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_11 PF13414.6 EME68660.1 - 8.9e-08 31.7 9.3 1.1e-05 24.9 1.4 4.0 1 1 3 4 4 4 2 TPR repeat TPR_1 PF00515.28 EME68660.1 - 9.2e-08 31.6 4.4 0.0087 15.8 0.0 4.6 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_14 PF13428.6 EME68660.1 - 6.3e-07 29.7 38.8 0.0015 19.2 0.7 6.2 1 1 5 6 6 6 4 Tetratricopeptide repeat TPR_8 PF13181.6 EME68660.1 - 1.1e-06 28.4 1.1 0.0067 16.6 0.0 4.0 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_16 PF13432.6 EME68660.1 - 2.4e-06 28.1 24.4 5.8e-05 23.6 11.2 4.5 4 1 1 5 5 4 3 Tetratricopeptide repeat TPR_12 PF13424.6 EME68660.1 - 1.2e-05 25.5 33.7 0.00056 20.1 6.8 5.3 2 2 2 4 4 4 3 Tetratricopeptide repeat Wzy_C_2 PF11846.8 EME68660.1 - 0.00023 21.2 4.8 0.0084 16.0 1.1 2.5 1 1 1 2 2 2 2 Virulence factor membrane-bound polymerase, C-terminal TPR_10 PF13374.6 EME68660.1 - 0.0039 17.0 25.9 0.2 11.6 1.5 5.1 4 1 0 4 4 4 3 Tetratricopeptide repeat TPR_20 PF14561.6 EME68660.1 - 0.013 15.9 16.8 0.51 10.7 0.3 3.6 1 1 2 4 4 4 0 Tetratricopeptide repeat TPR_6 PF13174.6 EME68660.1 - 1.5 9.6 22.4 7.3 7.5 0.1 5.8 6 1 1 7 7 7 0 Tetratricopeptide repeat T2SS-T3SS_pil_N PF13629.6 EME68661.1 - 1.1e-19 70.0 1.3 1.6e-19 69.4 1.3 1.3 1 0 0 1 1 1 1 Pilus formation protein N terminal region TadE PF07811.12 EME68662.1 - 9.7e-09 35.4 0.7 2.1e-08 34.3 0.7 1.6 1 0 0 1 1 1 1 TadE-like protein TadE PF07811.12 EME68663.1 - 5.8e-09 36.1 1.3 1.2e-08 35.1 1.3 1.5 1 0 0 1 1 1 1 TadE-like protein TadF PF16964.5 EME68663.1 - 0.0018 18.1 0.0 0.0037 17.0 0.0 1.5 1 1 0 1 1 1 1 Putative tight adherence pilin protein F YobH PF13996.6 EME68663.1 - 0.11 12.5 0.0 0.26 11.4 0.0 1.6 1 0 0 1 1 1 0 YobH-like protein Tad PF13400.6 EME68664.1 - 2.6e-10 40.4 11.8 2.6e-10 40.4 11.8 2.4 3 0 0 3 3 3 1 Putative Flp pilus-assembly TadE/G-like VWA PF00092.28 EME68664.1 - 4.3e-07 30.4 0.2 0.45 10.7 0.1 4.2 4 0 0 4 4 4 3 von Willebrand factor type A domain VWA_2 PF13519.6 EME68664.1 - 0.0012 19.4 0.7 0.031 14.9 0.0 3.2 3 1 1 4 4 4 1 von Willebrand factor type A domain BPD_transp_1 PF00528.22 EME68665.1 - 8.6e-13 48.4 32.8 2.9e-10 40.2 13.7 4.0 2 2 2 4 4 4 2 Binding-protein-dependent transport system inner membrane component PALP PF00291.25 EME68665.1 - 0.04 13.3 1.1 0.23 10.8 1.1 2.1 1 1 0 1 1 1 0 Pyridoxal-phosphate dependent enzyme ABC_tran PF00005.27 EME68666.1 - 3.1e-30 105.5 0.0 4.4e-30 105.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 EME68666.1 - 1.5e-07 31.5 1.3 1.3e-06 28.4 0.5 2.6 2 0 0 2 2 2 1 TOBE domain AAA_21 PF13304.6 EME68666.1 - 2.4e-06 27.6 0.0 0.0089 15.9 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE PF03459.17 EME68666.1 - 0.00014 22.1 1.1 0.0017 18.6 0.1 2.8 3 0 0 3 3 3 1 TOBE domain AAA_16 PF13191.6 EME68666.1 - 0.001 19.4 0.2 0.0022 18.4 0.2 1.6 1 1 0 1 1 1 1 AAA ATPase domain SbcCD_C PF13558.6 EME68666.1 - 0.0024 18.1 0.1 0.016 15.4 0.1 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit Rad17 PF03215.15 EME68666.1 - 0.011 15.7 0.1 0.017 15.0 0.1 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_33 PF13671.6 EME68666.1 - 0.026 14.7 0.5 0.31 11.2 0.5 2.2 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 EME68666.1 - 0.03 14.7 0.0 0.099 13.1 0.1 1.7 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 EME68666.1 - 0.042 13.6 0.0 0.3 10.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 EME68666.1 - 0.13 12.3 0.1 0.24 11.4 0.1 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) IstB_IS21 PF01695.17 EME68666.1 - 0.15 11.8 0.1 0.29 10.8 0.1 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein Ferritin_2 PF13668.6 EME68666.1 - 0.16 12.2 0.0 0.25 11.5 0.0 1.3 1 0 0 1 1 1 0 Ferritin-like domain CysA_C_terminal PF17850.1 EME68666.1 - 0.76 10.4 7.2 0.42 11.2 0.3 3.4 3 0 0 3 3 2 0 CysA C-terminal regulatory domain SBP_bac_6 PF13343.6 EME68667.1 - 7.7e-28 97.5 0.1 1e-27 97.1 0.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 EME68667.1 - 2.4e-25 89.9 0.2 3e-25 89.6 0.2 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 EME68667.1 - 7.2e-23 81.5 1.5 1e-22 81.0 1.5 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 EME68667.1 - 3.8e-17 63.2 0.1 5.6e-17 62.7 0.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein HpcH_HpaI PF03328.14 EME68668.1 - 1.8e-26 92.6 0.0 6e-26 90.9 0.0 1.9 2 1 0 2 2 2 1 HpcH/HpaI aldolase/citrate lyase family C-C_Bond_Lyase PF15617.6 EME68668.1 - 0.012 14.8 0.0 0.9 8.6 0.0 2.2 2 0 0 2 2 2 0 C-C_Bond_Lyase of the TIM-Barrel fold ParE_toxin PF05016.15 EME68669.1 - 1.5e-13 51.2 0.0 1.8e-13 50.9 0.0 1.1 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE PhdYeFM_antitox PF02604.19 EME68670.1 - 2e-14 53.1 0.1 2.5e-14 52.8 0.1 1.2 1 0 0 1 1 1 1 Antitoxin Phd_YefM, type II toxin-antitoxin system Glyoxalase_3 PF13468.6 EME68671.1 - 1.9e-38 132.3 0.4 1e-36 126.7 0.0 2.1 2 0 0 2 2 2 1 Glyoxalase-like domain Glyoxalase_4 PF13669.6 EME68671.1 - 3.6e-06 27.2 0.1 4.1e-05 23.8 0.0 2.2 2 0 0 2 2 2 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DUF4224 PF13986.6 EME68671.1 - 0.0032 17.3 0.0 0.0064 16.4 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4224) Glyoxalase PF00903.25 EME68671.1 - 0.0063 16.7 0.0 0.038 14.2 0.0 2.1 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PDH PF02153.17 EME68672.1 - 3e-76 255.9 0.0 3.4e-76 255.7 0.0 1.0 1 0 0 1 1 1 1 Prephenate dehydrogenase F420_oxidored PF03807.17 EME68672.1 - 6.4e-08 33.1 0.1 1.3e-07 32.1 0.1 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 EME68672.1 - 2.7e-07 30.9 0.0 1.5e-06 28.5 0.0 2.1 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 EME68672.1 - 0.00094 18.6 0.0 0.0022 17.4 0.0 1.5 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.18 EME68672.1 - 0.089 13.1 0.0 0.22 11.8 0.0 1.7 1 0 0 1 1 1 0 TrkA-N domain GFO_IDH_MocA PF01408.22 EME68672.1 - 0.092 13.6 0.1 0.26 12.1 0.0 1.7 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold Aminotran_1_2 PF00155.21 EME68673.1 - 2.4e-46 158.6 0.0 3.3e-46 158.1 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 EME68673.1 - 5.1e-05 22.4 0.0 0.00011 21.3 0.0 1.5 2 0 0 2 2 2 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 EME68673.1 - 6.5e-05 22.4 0.0 8.7e-05 22.0 0.0 1.1 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 EME68673.1 - 0.03 12.9 0.0 0.041 12.4 0.0 1.2 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme MFS_MOT1 PF16983.5 EME68673.1 - 0.048 14.1 0.2 2.8 8.4 0.0 2.5 2 0 0 2 2 2 0 Molybdate transporter of MFS superfamily CM_2 PF01817.21 EME68674.1 - 1.8e-17 63.4 0.1 3.2e-17 62.6 0.1 1.4 1 0 0 1 1 1 1 Chorismate mutase type II Abhydrolase_1 PF00561.20 EME68675.1 - 2.7e-30 105.9 0.2 3.4e-30 105.5 0.2 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 EME68675.1 - 0.0027 17.0 0.1 0.0054 16.0 0.1 1.4 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Esterase PF00756.20 EME68675.1 - 0.1 12.2 0.0 0.22 11.2 0.0 1.5 2 0 0 2 2 2 0 Putative esterase MetW PF07021.12 EME68676.1 - 1.4e-83 279.2 0.0 1.6e-83 279.1 0.0 1.0 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_23 PF13489.6 EME68676.1 - 7.1e-11 42.2 0.0 1.2e-10 41.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 EME68676.1 - 1.5e-08 35.2 0.0 2.2e-08 34.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 EME68676.1 - 2.9e-07 30.4 0.0 5.4e-07 29.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 EME68676.1 - 4.7e-07 30.4 0.0 7.4e-07 29.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 EME68676.1 - 1.1e-05 26.0 0.1 2.6e-05 24.9 0.1 1.5 1 1 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 EME68676.1 - 0.0028 17.0 0.1 0.0038 16.6 0.1 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_18 PF12847.7 EME68676.1 - 0.014 15.4 0.0 0.026 14.4 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain sCache_2 PF17200.4 EME68677.1 - 7e-37 126.7 0.0 2.5e-36 124.9 0.0 2.0 1 0 0 1 1 1 1 Single Cache domain 2 dCache_2 PF08269.11 EME68677.1 - 2.9e-32 112.1 0.0 2.9e-32 112.1 0.0 2.7 3 0 0 3 3 3 1 Cache domain MCPsignal PF00015.21 EME68677.1 - 5.4e-30 104.5 47.7 1.3e-29 103.3 29.3 2.5 1 1 1 2 2 2 1 Methyl-accepting chemotaxis protein (MCP) signalling domain Cache_3-Cache_2 PF17201.4 EME68677.1 - 6.1e-08 32.3 0.0 6.1e-08 32.3 0.0 3.2 2 1 0 3 3 3 1 Cache 3/Cache 2 fusion domain HAMP PF00672.25 EME68677.1 - 1.3e-07 31.9 2.1 1.2e-06 28.8 0.1 3.6 3 0 0 3 3 3 1 HAMP domain DUF948 PF06103.11 EME68677.1 - 0.018 15.3 24.4 3.7 7.9 0.8 6.0 2 2 3 5 5 5 0 Bacterial protein of unknown function (DUF948) DUF1664 PF07889.12 EME68677.1 - 0.018 15.0 19.2 0.27 11.3 1.5 4.5 3 2 1 5 5 5 0 Protein of unknown function (DUF1664) GAS PF13851.6 EME68677.1 - 0.24 10.7 3.5 0.22 10.8 0.9 2.1 2 0 0 2 2 2 0 Growth-arrest specific micro-tubule binding AAA_13 PF13166.6 EME68677.1 - 0.79 8.3 13.7 1.7 7.2 13.6 1.6 1 1 0 1 1 1 0 AAA domain Syntaxin_2 PF14523.6 EME68677.1 - 0.81 10.1 3.8 4.6 7.7 0.2 3.1 2 2 0 2 2 2 0 Syntaxin-like protein IFT46_B_C PF12317.8 EME68677.1 - 0.82 9.4 2.7 14 5.4 0.0 2.9 1 1 2 4 4 4 0 Intraflagellar transport complex B protein 46 C terminal DUF4756 PF15948.5 EME68677.1 - 9.4 6.1 8.2 0.69 9.7 0.9 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4756) PPK2 PF03976.14 EME68678.1 - 1.4e-136 453.3 11.6 4.1e-85 284.9 3.2 2.0 2 0 0 2 2 2 2 Polyphosphate kinase 2 (PPK2) Thymidylate_kin PF02223.17 EME68678.1 - 0.001 18.8 0.0 1.1 8.9 0.0 3.1 3 0 0 3 3 3 2 Thymidylate kinase Zeta_toxin PF06414.12 EME68678.1 - 0.0059 15.9 0.0 0.12 11.6 0.0 2.7 2 1 1 3 3 3 1 Zeta toxin DUF190 PF02641.15 EME68678.1 - 0.041 14.2 0.0 1.2 9.5 0.0 2.9 3 0 0 3 3 3 0 Uncharacterized ACR, COG1993 AAA_18 PF13238.6 EME68678.1 - 0.12 12.9 0.0 5.1 7.6 0.1 2.8 3 0 0 3 3 3 0 AAA domain DUF2735 PF10931.8 EME68678.1 - 0.73 10.6 3.5 41 4.9 0.2 3.8 4 0 0 4 4 4 0 Protein of unknown function (DUF2735) RHH_1 PF01402.21 EME68679.1 - 0.021 14.8 2.9 0.021 14.8 2.9 1.7 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family ParE_toxin PF05016.15 EME68680.1 - 7.5e-11 42.5 0.0 8.3e-11 42.4 0.0 1.0 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE MFS_1 PF07690.16 EME68681.1 - 1.6e-28 99.7 40.8 2.5e-28 99.0 40.8 1.2 1 0 0 1 1 1 1 Major Facilitator Superfamily MFS_4 PF06779.14 EME68681.1 - 8.9e-08 31.8 33.1 1.4e-07 31.2 33.1 1.3 1 0 0 1 1 1 1 Uncharacterised MFS-type transporter YbfB Sugar_tr PF00083.24 EME68681.1 - 5.4e-05 22.2 16.2 0.02 13.7 3.5 3.1 3 0 0 3 3 3 3 Sugar (and other) transporter MFS_2 PF13347.6 EME68681.1 - 0.00025 19.8 9.1 0.00025 19.8 9.1 2.9 1 1 1 3 3 3 2 MFS/sugar transport protein OATP PF03137.20 EME68681.1 - 0.26 9.5 4.2 0.12 10.6 0.5 2.0 1 1 1 2 2 2 0 Organic Anion Transporter Polypeptide (OATP) family Hemerythrin PF01814.23 EME68682.1 - 1.9e-06 28.5 2.6 2.4e-06 28.2 2.6 1.1 1 0 0 1 1 1 1 Hemerythrin HHE cation binding domain Pyr_redox_2 PF07992.14 EME68683.1 - 1.4e-71 241.1 10.9 2.1e-71 240.6 10.9 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 EME68683.1 - 9.7e-39 132.0 0.2 9.7e-39 132.0 0.2 2.1 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 EME68683.1 - 7.8e-22 77.6 8.3 1e-19 70.8 0.6 3.1 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 EME68683.1 - 1.3e-12 47.6 5.4 5.6e-09 35.7 0.0 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 EME68683.1 - 8.3e-09 35.3 6.0 8.3e-09 35.3 6.0 3.1 2 2 1 3 3 3 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 EME68683.1 - 1.6e-07 30.8 19.6 2.4e-07 30.2 2.5 4.2 5 0 0 5 5 5 2 FAD binding domain GIDA PF01134.22 EME68683.1 - 1.4e-06 27.6 16.2 8.1e-06 25.2 9.8 2.9 2 1 0 2 2 2 1 Glucose inhibited division protein A HI0933_like PF03486.14 EME68683.1 - 5e-06 25.5 14.6 0.00019 20.2 1.4 4.2 3 1 1 4 4 4 2 HI0933-like protein Thi4 PF01946.17 EME68683.1 - 2.7e-05 23.5 1.6 0.00018 20.8 0.2 2.5 2 0 0 2 2 2 1 Thi4 family K_oxygenase PF13434.6 EME68683.1 - 2.8e-05 23.5 1.0 0.014 14.5 0.1 2.7 3 0 0 3 3 3 2 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_8 PF13450.6 EME68683.1 - 4.1e-05 23.7 1.3 4.1e-05 23.7 1.3 3.2 4 0 0 4 4 3 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 EME68683.1 - 5.1e-05 23.0 19.0 0.011 15.3 0.1 4.1 4 0 0 4 4 4 2 FAD dependent oxidoreductase AlaDh_PNT_C PF01262.21 EME68683.1 - 7.2e-05 22.2 6.0 0.025 13.9 0.3 3.2 3 0 0 3 3 3 2 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_3 PF01494.19 EME68683.1 - 0.00063 19.1 14.3 0.0064 15.8 0.7 3.7 3 1 1 4 4 4 1 FAD binding domain Amino_oxidase PF01593.24 EME68683.1 - 0.022 14.1 0.6 0.041 13.2 0.0 1.7 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase Mqo PF06039.15 EME68683.1 - 0.13 10.7 1.0 1.5 7.3 0.0 2.2 1 1 1 2 2 2 0 Malate:quinone oxidoreductase (Mqo) Lycopene_cycl PF05834.12 EME68683.1 - 0.25 10.3 9.4 0.56 9.2 1.0 3.3 2 1 1 3 3 3 0 Lycopene cyclase protein 3HCDH_N PF02737.18 EME68683.1 - 0.7 9.7 5.1 0.15 12.0 0.4 2.3 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 EME68683.1 - 1.1 9.8 10.1 2.1 8.8 0.6 4.1 4 2 0 4 4 4 0 Putative NAD(P)-binding PhoH PF02562.16 EME68684.1 - 1.1e-78 263.3 0.0 1.3e-78 263.2 0.0 1.0 1 0 0 1 1 1 1 PhoH-like protein AAA_30 PF13604.6 EME68684.1 - 9e-10 38.6 0.0 1.3e-09 38.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.6 EME68684.1 - 4.8e-07 30.2 0.1 4.8e-06 27.0 0.1 2.1 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 EME68684.1 - 0.00052 19.8 0.0 0.00093 19.0 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein UvrD-helicase PF00580.21 EME68684.1 - 0.00057 19.5 0.1 0.094 12.2 0.0 2.1 2 0 0 2 2 2 1 UvrD/REP helicase N-terminal domain Viral_helicase1 PF01443.18 EME68684.1 - 0.00065 19.5 0.0 0.0066 16.2 0.0 2.2 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase AAA_22 PF13401.6 EME68684.1 - 0.00067 19.9 0.1 0.0033 17.7 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 EME68684.1 - 0.0011 18.6 0.0 0.0078 15.8 0.0 2.1 2 0 0 2 2 2 1 AAA domain DUF2075 PF09848.9 EME68684.1 - 0.01 15.1 0.0 0.028 13.7 0.0 1.7 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) Zot PF05707.12 EME68684.1 - 0.019 14.6 0.0 6.3 6.4 0.0 2.2 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) AAA_11 PF13086.6 EME68684.1 - 0.025 14.4 0.0 7.1 6.3 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 EME68684.1 - 0.041 14.3 0.0 0.08 13.3 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain DEAD PF00270.29 EME68684.1 - 0.074 12.8 0.1 1.3 8.8 0.0 2.4 2 1 1 3 3 3 0 DEAD/DEAH box helicase AAA PF00004.29 EME68684.1 - 0.12 12.8 0.3 0.24 11.8 0.1 1.9 2 1 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) DUF21 PF01595.20 EME68685.1 - 7.3e-40 136.5 5.7 1.1e-39 135.9 5.7 1.2 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain CorC_HlyC PF03471.17 EME68685.1 - 1e-19 70.3 0.0 2.6e-19 69.0 0.0 1.7 1 0 0 1 1 1 1 Transporter associated domain CBS PF00571.28 EME68685.1 - 4e-17 62.4 1.0 1e-07 32.3 0.0 3.2 3 0 0 3 3 3 2 CBS domain YrvL PF14184.6 EME68685.1 - 0.056 13.5 0.2 0.056 13.5 0.2 1.9 3 0 0 3 3 3 0 Regulatory protein YrvL DHQ_synthase PF01761.20 EME68686.1 - 1.8e-101 338.7 0.0 2.2e-101 338.4 0.0 1.1 1 0 0 1 1 1 1 3-dehydroquinate synthase Fe-ADH_2 PF13685.6 EME68686.1 - 2.4e-18 66.7 0.7 9e-17 61.6 0.7 2.1 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 EME68686.1 - 1.6e-14 53.5 5.3 2.4e-12 46.4 0.6 2.1 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase Exonuc_VII_L PF02601.15 EME68686.1 - 0.2 11.2 0.0 0.28 10.7 0.0 1.2 1 0 0 1 1 1 0 Exonuclease VII, large subunit SKI PF01202.22 EME68687.1 - 1.2e-41 142.5 0.0 1.4e-41 142.2 0.0 1.0 1 0 0 1 1 1 1 Shikimate kinase AAA_18 PF13238.6 EME68687.1 - 4.7e-06 27.2 0.0 1.1e-05 26.0 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 EME68687.1 - 8.4e-06 26.0 0.0 1.5e-05 25.2 0.0 1.5 1 1 0 1 1 1 1 AAA domain Cytidylate_kin2 PF13189.6 EME68687.1 - 7.6e-05 22.9 0.0 0.00017 21.7 0.0 1.6 1 1 1 2 2 2 1 Cytidylate kinase-like family TsaE PF02367.17 EME68687.1 - 0.011 15.7 0.0 0.016 15.2 0.0 1.2 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Cytidylate_kin PF02224.18 EME68687.1 - 0.017 14.9 0.0 0.027 14.2 0.0 1.4 1 0 0 1 1 1 0 Cytidylate kinase AAA_16 PF13191.6 EME68687.1 - 0.034 14.5 0.2 0.038 14.4 0.2 1.4 1 1 0 1 1 1 0 AAA ATPase domain CoaE PF01121.20 EME68687.1 - 0.045 13.4 0.1 0.17 11.5 0.0 1.8 2 0 0 2 2 2 0 Dephospho-CoA kinase AAA_22 PF13401.6 EME68687.1 - 0.1 12.9 0.0 0.12 12.6 0.0 1.4 1 1 0 1 1 1 0 AAA domain TPR_4 PF07721.14 EME68689.1 - 0.032 14.8 1.6 0.032 14.8 1.6 6.3 8 0 0 8 8 8 0 Tetratricopeptide repeat Phage_integrase PF00589.22 EME68690.1 - 1.1e-39 136.0 0.0 1.4e-39 135.6 0.0 1.1 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.17 EME68690.1 - 2.3e-17 63.0 0.0 1.3e-16 60.6 0.0 2.1 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 EME68690.1 - 5.9e-05 23.5 0.0 0.00013 22.4 0.0 1.6 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain HTH_31 PF13560.6 EME68691.1 - 0.021 15.2 2.8 0.03 14.7 2.8 1.4 1 1 0 1 1 1 0 Helix-turn-helix domain YdaS_antitoxin PF15943.5 EME68691.1 - 0.025 14.5 0.8 0.12 12.3 0.8 2.2 1 1 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT NTP_transf_3 PF12804.7 EME68691.1 - 0.026 14.9 0.2 0.03 14.7 0.2 1.1 1 0 0 1 1 1 0 MobA-like NTP transferase domain Rtt106_N PF18215.1 EME68691.1 - 0.071 12.9 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 Histone chaperone Rtt106 N-terminal domain NAD_binding_10 PF13460.6 EME68692.1 - 4.3e-21 75.7 6.4 2.7e-19 69.8 5.4 2.2 2 0 0 2 2 2 1 NAD(P)H-binding Epimerase PF01370.21 EME68692.1 - 6.1e-20 71.7 0.0 1.9e-19 70.1 0.0 1.7 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NmrA PF05368.13 EME68692.1 - 1.1e-17 64.3 1.4 4.4e-13 49.3 3.1 2.1 2 0 0 2 2 2 2 NmrA-like family 3Beta_HSD PF01073.19 EME68692.1 - 2.4e-17 62.9 0.0 2e-14 53.3 0.0 2.1 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 EME68692.1 - 6.4e-15 55.0 0.0 3.3e-12 46.1 0.0 3.0 2 1 0 2 2 2 1 RmlD substrate binding domain adh_short PF00106.25 EME68692.1 - 1.4e-05 24.6 4.4 0.00013 21.5 4.4 2.1 1 1 0 1 1 1 1 short chain dehydrogenase Sacchrp_dh_NADP PF03435.18 EME68692.1 - 3.9e-05 23.9 0.4 6.3e-05 23.2 0.4 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain GDP_Man_Dehyd PF16363.5 EME68692.1 - 0.00012 21.7 0.0 0.0022 17.5 0.0 2.2 2 0 0 2 2 2 1 GDP-mannose 4,6 dehydratase NAD_binding_4 PF07993.12 EME68692.1 - 0.0003 20.1 0.0 0.012 14.7 0.0 2.4 2 1 0 2 2 2 1 Male sterility protein KR PF08659.10 EME68692.1 - 0.0019 18.2 1.1 0.0031 17.5 1.1 1.3 1 0 0 1 1 1 1 KR domain adh_short_C2 PF13561.6 EME68692.1 - 0.011 15.3 6.0 0.049 13.2 5.0 2.2 2 1 0 2 2 2 0 Enoyl-(Acyl carrier protein) reductase Glyco_trans_4_4 PF13579.6 EME68692.1 - 0.025 15.0 4.4 0.039 14.4 4.4 1.3 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain DUF4808 PF16066.5 EME68692.1 - 0.049 14.2 0.0 0.1 13.2 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4808) DNA_pol_A_exo1 PF01612.20 EME68693.1 - 3.2e-35 121.4 0.0 3.8e-35 121.2 0.0 1.0 1 0 0 1 1 1 1 3'-5' exonuclease RNase_H_2 PF13482.6 EME68693.1 - 0.00036 20.6 0.0 0.0026 17.8 0.0 1.9 1 1 0 1 1 1 1 RNase_H superfamily RNase_T PF00929.24 EME68693.1 - 0.0051 17.4 0.0 1.9 9.0 0.0 2.2 1 1 1 2 2 2 2 Exonuclease SIS PF01380.22 EME68694.1 - 4.5e-28 97.7 0.0 7.1e-28 97.1 0.0 1.3 1 0 0 1 1 1 1 SIS domain CBS PF00571.28 EME68694.1 - 1.6e-19 70.1 0.0 4.6e-10 39.8 0.0 3.5 3 0 0 3 3 3 2 CBS domain SIS_2 PF13580.6 EME68694.1 - 0.0044 17.0 0.5 0.26 11.3 0.0 2.7 2 1 1 3 3 3 1 SIS domain LptC PF06835.13 EME68695.1 - 2.8e-12 46.6 0.0 3.3e-12 46.4 0.0 1.1 1 0 0 1 1 1 1 Lipopolysaccharide-assembly, LptC-related OstA PF03968.14 EME68696.1 - 7.4e-17 61.6 0.8 1.6e-07 31.6 0.0 2.9 2 1 1 3 3 3 2 OstA-like protein LptC PF06835.13 EME68696.1 - 0.0038 16.8 0.0 3.4 7.2 0.0 2.6 3 1 0 3 3 3 2 Lipopolysaccharide-assembly, LptC-related ABC_tran PF00005.27 EME68697.1 - 4.4e-33 114.7 0.0 6.5e-33 114.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 EME68697.1 - 7.3e-07 29.3 1.3 0.019 14.8 0.2 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system BCA_ABC_TP_C PF12399.8 EME68697.1 - 1.6e-05 24.7 0.2 3.2e-05 23.7 0.2 1.5 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter SMC_N PF02463.19 EME68697.1 - 0.0099 15.3 0.1 3.8 6.9 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 EME68697.1 - 0.011 16.3 0.0 0.016 15.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 EME68697.1 - 0.083 12.6 0.0 0.15 11.8 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Sigma54_DBD PF04552.13 EME68698.1 - 3.3e-68 228.4 1.3 5.1e-68 227.8 1.3 1.3 1 0 0 1 1 1 1 Sigma-54, DNA binding domain Sigma54_CBD PF04963.13 EME68698.1 - 1.2e-49 168.6 0.0 2.1e-49 167.8 0.0 1.4 1 0 0 1 1 1 1 Sigma-54 factor, core binding domain Sigma54_AID PF00309.20 EME68698.1 - 3e-19 68.6 6.8 6.6e-19 67.5 6.8 1.6 1 0 0 1 1 1 1 Sigma-54 factor, Activator interacting domain (AID) Arg_repressor PF01316.21 EME68698.1 - 0.0062 16.3 0.0 0.021 14.6 0.0 1.8 1 0 0 1 1 1 1 Arginine repressor, DNA binding domain HTH_23 PF13384.6 EME68698.1 - 0.019 14.7 0.1 21 5.0 0.0 3.5 3 0 0 3 3 3 0 Homeodomain-like domain HTH_38 PF13936.6 EME68698.1 - 0.18 11.6 0.5 2.2 8.1 0.1 2.7 3 0 0 3 3 3 0 Helix-turn-helix domain PTS_EIIA_2 PF00359.22 EME68699.1 - 7e-35 120.0 0.0 7.8e-35 119.9 0.0 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DUF1150 PF06620.11 EME68700.1 - 3.6e-11 43.0 0.1 1.5e-08 34.6 0.1 2.1 1 1 1 2 2 2 2 Protein of unknown function (DUF1150) HSP20 PF00011.21 EME68701.1 - 8.1e-17 61.2 0.0 1.2e-16 60.7 0.0 1.2 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 EME68701.1 - 0.0038 16.8 0.0 0.0091 15.5 0.0 1.7 1 1 0 1 1 1 1 HSP20-like domain found in ArsA DUF4743 PF15916.5 EME68702.1 - 2.1e-34 118.1 0.0 2.9e-34 117.6 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4743) NUDIX PF00293.28 EME68702.1 - 4.2e-05 23.6 0.0 6.5e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 NUDIX domain GST_N_3 PF13417.6 EME68703.1 - 4.1e-19 68.8 0.0 7.2e-19 68.0 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.6 EME68703.1 - 7.1e-15 55.1 0.0 1.5e-14 54.0 0.0 1.6 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N PF02798.20 EME68703.1 - 2.9e-11 43.5 0.0 5.7e-11 42.6 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_C_2 PF13410.6 EME68703.1 - 1e-07 31.9 1.2 1.9e-07 31.0 1.2 1.7 1 1 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C_3 PF14497.6 EME68703.1 - 1.9e-05 24.8 0.0 4.3e-05 23.6 0.0 1.5 1 1 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C PF00043.25 EME68703.1 - 0.0003 21.0 0.0 0.001 19.2 0.0 1.9 2 0 0 2 2 2 1 Glutathione S-transferase, C-terminal domain Tom37 PF10568.9 EME68703.1 - 0.044 14.1 0.0 0.11 12.7 0.0 1.6 2 0 0 2 2 2 0 Outer mitochondrial membrane transport complex protein GST_N_4 PF17172.4 EME68703.1 - 0.15 12.9 0.0 0.24 12.1 0.0 1.3 1 0 0 1 1 1 0 Glutathione S-transferase N-terminal domain LysE PF01810.18 EME68704.1 - 4.2e-19 68.8 13.5 5.1e-19 68.5 13.5 1.0 1 0 0 1 1 1 1 LysE type translocator Phos_pyr_kin PF08543.12 EME68705.1 - 5.1e-20 71.9 0.0 6.1e-20 71.7 0.0 1.1 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase PfkB PF00294.24 EME68705.1 - 8.4e-12 45.0 0.0 1.2e-11 44.4 0.0 1.3 1 0 0 1 1 1 1 pfkB family carbohydrate kinase HpcH_HpaI PF03328.14 EME68706.1 - 1.8e-50 171.2 0.0 2.7e-50 170.6 0.0 1.3 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family C-C_Bond_Lyase PF15617.6 EME68706.1 - 6.4e-09 35.4 0.0 0.0033 16.6 0.0 2.3 2 1 0 2 2 2 2 C-C_Bond_Lyase of the TIM-Barrel fold PEP-utilizers_C PF02896.18 EME68706.1 - 0.00036 19.8 0.0 0.00059 19.0 0.0 1.3 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain MaoC_dehydratas PF01575.19 EME68707.1 - 1.4e-13 50.5 0.7 6.5e-06 25.7 0.2 2.6 2 1 0 2 2 2 2 MaoC like domain MaoC_dehydrat_N PF13452.6 EME68707.1 - 0.0055 16.8 0.2 0.011 15.9 0.2 1.6 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase Sdh_cyt PF01127.22 EME68708.1 - 6.5e-23 81.1 6.8 7.4e-23 80.9 6.8 1.0 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Fumarate_red_D PF02313.17 EME68708.1 - 0.00018 21.5 0.9 0.00069 19.7 0.5 1.8 1 1 1 2 2 2 1 Fumarate reductase subunit D LptF_LptG PF03739.14 EME68708.1 - 0.31 9.8 4.0 0.39 9.5 4.0 1.1 1 0 0 1 1 1 0 Lipopolysaccharide export system permease LptF/LptG Sdh_cyt PF01127.22 EME68709.1 - 1.5e-18 67.0 4.0 1.7e-18 66.8 4.0 1.1 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CybS PF05328.12 EME68709.1 - 9.6e-05 22.1 3.8 0.0013 18.4 3.8 2.0 1 1 0 1 1 1 1 CybS, succinate dehydrogenase cytochrome B small subunit Osw5 PF17062.5 EME68709.1 - 0.038 14.1 0.9 0.038 14.1 0.9 2.3 2 1 0 2 2 2 0 Outer spore wall 5 Fumarate_red_C PF02300.17 EME68709.1 - 0.78 9.8 6.5 1.1 9.3 6.5 1.2 1 1 0 1 1 1 0 Fumarate reductase subunit C FAD_binding_2 PF00890.24 EME68710.1 - 6.8e-124 414.1 5.4 8.8e-124 413.7 5.4 1.1 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.20 EME68710.1 - 9.5e-42 142.0 0.7 1.4e-41 141.5 0.7 1.3 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.14 EME68710.1 - 1.4e-05 24.5 0.4 0.0001 21.7 0.4 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 EME68710.1 - 0.00078 18.6 1.2 0.068 12.3 2.7 2.1 2 0 0 2 2 2 1 Glucose inhibited division protein A Thi4 PF01946.17 EME68710.1 - 0.0085 15.4 1.1 0.026 13.8 0.3 2.0 2 0 0 2 2 2 1 Thi4 family FAD_binding_3 PF01494.19 EME68710.1 - 0.042 13.1 2.8 0.032 13.5 0.9 1.7 2 0 0 2 2 2 0 FAD binding domain HI0933_like PF03486.14 EME68710.1 - 0.089 11.5 0.8 0.58 8.8 1.2 1.9 2 0 0 2 2 2 0 HI0933-like protein Fer2_3 PF13085.6 EME68711.1 - 1.2e-32 112.1 0.0 1.9e-32 111.5 0.0 1.3 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.6 EME68711.1 - 4.5e-11 43.0 19.0 5.3e-09 36.4 6.6 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 EME68711.1 - 4.5e-09 36.7 3.3 4.5e-09 36.7 3.3 1.8 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 EME68711.1 - 6.2e-07 29.4 4.8 6.2e-07 29.4 4.8 2.5 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer2 PF00111.27 EME68711.1 - 0.0064 16.4 0.3 0.0064 16.4 0.3 2.2 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4_9 PF13187.6 EME68711.1 - 0.28 11.4 14.5 0.047 13.9 7.9 2.7 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 EME68711.1 - 0.59 11.1 9.1 3.1 8.8 1.1 3.0 3 0 0 3 3 3 0 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 EME68711.1 - 2.5 8.8 16.5 1 10.0 10.0 3.1 2 2 1 3 3 3 0 4Fe-4S dicluster domain DHHA1 PF02272.19 EME68713.1 - 0.1 13.0 0.1 0.2 12.1 0.1 1.5 1 0 0 1 1 1 0 DHHA1 domain AFG1_ATPase PF03969.16 EME68714.1 - 2.6e-122 408.2 0.0 4.4e-122 407.5 0.0 1.3 1 1 0 1 1 1 1 AFG1-like ATPase IstB_IS21 PF01695.17 EME68714.1 - 0.0009 19.0 0.0 0.3 10.8 0.0 2.3 2 0 0 2 2 2 2 IstB-like ATP binding protein Bac_DnaA PF00308.18 EME68714.1 - 0.013 15.4 0.0 0.75 9.6 0.0 2.7 2 1 0 2 2 2 0 Bacterial dnaA protein AAA_16 PF13191.6 EME68714.1 - 0.016 15.6 1.5 1.5 9.2 0.2 3.2 2 2 0 2 2 2 0 AAA ATPase domain AAA_22 PF13401.6 EME68714.1 - 0.039 14.2 0.0 0.083 13.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.7 EME68714.1 - 0.042 12.8 0.0 0.15 10.9 0.0 1.8 2 0 0 2 2 2 0 AAA-like domain ETRAMP PF09716.10 EME68716.1 - 0.026 14.6 0.3 0.84 9.7 0.0 3.0 2 1 1 3 3 3 0 Malarial early transcribed membrane protein (ETRAMP) MauJ PF17419.2 EME68716.1 - 0.028 13.9 0.0 0.043 13.3 0.0 1.3 1 0 0 1 1 1 0 Methylamine utilization protein MauJ Neurensin PF14927.6 EME68716.1 - 0.035 13.8 0.0 0.051 13.3 0.0 1.3 1 0 0 1 1 1 0 Neurensin DUF2167 PF09935.9 EME68716.1 - 0.043 13.0 0.3 0.061 12.5 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2167) TMEM251 PF15190.6 EME68717.1 - 0.038 14.0 0.0 0.11 12.5 0.0 1.6 1 1 1 2 2 2 0 Transmembrane protein 251 DUF3325 PF11804.8 EME68717.1 - 5 7.3 12.1 2.4 8.4 7.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3325) Phage_integrase PF00589.22 EME68718.1 - 1.4e-17 64.0 0.0 2.6e-17 63.1 0.0 1.4 1 0 0 1 1 1 1 Phage integrase family Arm-DNA-bind_3 PF13356.6 EME68718.1 - 8.2e-17 61.4 0.1 2.9e-16 59.6 0.1 1.9 2 0 0 2 2 2 1 Arm DNA-binding domain HTH_17 PF12728.7 EME68719.1 - 9.1e-07 29.0 0.0 1.1e-06 28.7 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma54_CBD PF04963.13 EME68720.1 - 0.086 12.7 0.0 0.14 12.0 0.0 1.2 1 0 0 1 1 1 0 Sigma-54 factor, core binding domain DUF1206 PF06724.11 EME68723.1 - 0.099 12.7 3.4 0.11 12.6 0.1 2.3 2 0 0 2 2 2 0 Domain of Unknown Function (DUF1206) S_4TM PF18159.1 EME68724.1 - 5.5e-87 291.8 0.0 6.2e-87 291.6 0.0 1.0 1 0 0 1 1 1 1 SMODS-associating 4TM effector domain DHHA1 PF02272.19 EME68727.1 - 1.8e-06 28.4 0.1 4.2e-06 27.2 0.1 1.5 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.20 EME68727.1 - 0.11 12.8 0.0 0.19 12.0 0.0 1.4 1 0 0 1 1 1 0 DHH family IF3_C PF00707.22 EME68728.1 - 4.7e-40 135.4 3.3 6.8e-40 134.9 3.3 1.3 1 0 0 1 1 1 1 Translation initiation factor IF-3, C-terminal domain IF3_N PF05198.16 EME68728.1 - 4.8e-29 100.4 0.0 9.9e-29 99.4 0.0 1.5 1 0 0 1 1 1 1 Translation initiation factor IF-3, N-terminal domain Tubulin_3 PF14881.6 EME68728.1 - 0.015 15.0 0.1 0.019 14.6 0.1 1.3 1 0 0 1 1 1 0 Tubulin domain Cystatin PF00031.21 EME68728.1 - 0.069 13.4 0.1 0.091 13.0 0.1 1.2 1 0 0 1 1 1 0 Cystatin domain tRNA-synt_2b PF00587.25 EME68729.1 - 9.4e-42 143.0 0.0 1.7e-41 142.2 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 EME68729.1 - 3.9e-19 68.6 2.4 3.9e-19 68.6 2.4 2.0 2 0 0 2 2 2 1 Anticodon binding domain tRNA_SAD PF07973.14 EME68729.1 - 1.3e-13 50.8 0.0 2.4e-13 49.9 0.0 1.5 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain TGS PF02824.21 EME68729.1 - 1.8e-06 27.9 0.1 3.6e-06 26.9 0.1 1.6 1 0 0 1 1 1 1 TGS domain IPPT PF01715.17 EME68729.1 - 0.012 15.5 0.6 0.2 11.4 0.1 2.2 2 0 0 2 2 2 0 IPP transferase Lipoprotein_15 PF03640.15 EME68729.1 - 0.16 11.6 0.0 0.34 10.5 0.0 1.5 1 0 0 1 1 1 0 Secreted repeat of unknown function DUF5555 PF17710.1 EME68729.1 - 0.16 11.5 0.2 0.28 10.7 0.2 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5555) Glyco_transf_9 PF01075.17 EME68730.1 - 3.7e-24 85.4 0.0 4.9e-24 85.0 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase family 9 (heptosyltransferase) Glyco_transf_4 PF13439.6 EME68731.1 - 3.6e-33 115.0 2.1 2.9e-28 99.0 1.5 2.7 2 1 0 2 2 2 2 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.20 EME68731.1 - 2.6e-27 95.5 0.0 3.9e-27 94.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 EME68731.1 - 3.5e-23 82.5 0.0 8e-23 81.3 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 EME68731.1 - 5e-20 72.5 16.6 1.9e-16 60.9 4.1 2.7 2 1 0 2 2 2 2 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 EME68731.1 - 6.7e-09 35.9 0.0 1.3e-08 34.9 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like Hydrolase_4 PF12146.8 EME68732.1 - 7.4e-15 54.9 2.4 3.9e-11 42.7 1.1 2.1 1 1 1 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 EME68732.1 - 3e-13 50.9 4.1 4.1e-13 50.4 4.1 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 EME68732.1 - 2.2e-07 30.8 0.4 2.9e-06 27.1 0.2 2.0 1 1 0 2 2 2 1 alpha/beta hydrolase fold Peptidase_S9 PF00326.21 EME68732.1 - 0.00063 19.3 0.0 0.0014 18.1 0.0 1.5 1 1 0 1 1 1 1 Prolyl oligopeptidase family Esterase PF00756.20 EME68732.1 - 0.002 17.8 0.0 0.0037 16.9 0.0 1.5 1 1 0 1 1 1 1 Putative esterase Peptidase_S15 PF02129.18 EME68732.1 - 0.0023 17.6 0.0 0.048 13.2 0.0 2.1 1 1 1 2 2 2 1 X-Pro dipeptidyl-peptidase (S15 family) Patatin PF01734.22 EME68732.1 - 0.0055 16.9 0.0 0.009 16.2 0.0 1.4 1 0 0 1 1 1 1 Patatin-like phospholipase UPF0227 PF05728.12 EME68732.1 - 0.0061 16.5 0.0 0.027 14.4 0.0 2.1 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0227) Ser_hydrolase PF06821.13 EME68732.1 - 0.064 13.1 0.0 0.32 10.8 0.0 1.8 2 0 0 2 2 2 0 Serine hydrolase Thioesterase PF00975.20 EME68732.1 - 0.12 12.5 0.1 0.27 11.3 0.1 1.7 1 1 0 1 1 1 0 Thioesterase domain DUF2920 PF11144.8 EME68732.1 - 0.16 11.1 0.0 0.23 10.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2920) Abhydrolase_2 PF02230.16 EME68732.1 - 0.24 11.2 0.0 5.6 6.7 0.0 2.3 2 0 0 2 2 2 0 Phospholipase/Carboxylesterase SpoIIE PF07228.12 EME68735.1 - 1.5e-42 145.7 0.3 2.8e-42 144.9 0.3 1.4 1 0 0 1 1 1 1 Stage II sporulation protein E (SpoIIE) HATPase_c_2 PF13581.6 EME68735.1 - 5.9e-24 84.4 0.0 1.3e-23 83.3 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain GAF_2 PF13185.6 EME68735.1 - 1.4e-16 61.1 0.6 7.3e-16 58.7 0.2 2.2 2 0 0 2 2 2 1 GAF domain GAF PF01590.26 EME68735.1 - 2.7e-11 44.2 0.0 5.3e-11 43.3 0.0 1.5 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.6 EME68735.1 - 1.4e-06 28.7 0.0 3.3e-06 27.5 0.0 1.7 1 0 0 1 1 1 1 GAF domain STAS_2 PF13466.6 EME68736.1 - 5.6e-20 71.5 1.1 6.7e-20 71.2 1.1 1.1 1 0 0 1 1 1 1 STAS domain STAS PF01740.21 EME68736.1 - 4.3e-18 65.0 0.0 4.9e-18 64.9 0.0 1.0 1 0 0 1 1 1 1 STAS domain MlaE PF02405.16 EME68737.1 - 1.4e-66 224.2 23.3 1.7e-66 223.9 23.3 1.0 1 0 0 1 1 1 1 Permease MlaE ABC_tran PF00005.27 EME68738.1 - 7.2e-29 101.1 0.0 9.9e-29 100.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 EME68738.1 - 4.5e-05 23.4 0.5 0.16 11.7 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 EME68738.1 - 8e-05 23.1 1.0 0.00062 20.2 1.0 2.1 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 EME68738.1 - 0.00011 22.2 0.3 0.00018 21.5 0.3 1.3 1 0 0 1 1 1 1 RsgA GTPase cobW PF02492.19 EME68738.1 - 0.00095 18.8 0.3 0.0017 18.0 0.1 1.5 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain T2SSE PF00437.20 EME68738.1 - 0.00098 18.3 0.2 0.0016 17.6 0.2 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_19 PF13245.6 EME68738.1 - 0.0014 19.0 0.1 0.0022 18.3 0.1 1.4 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 EME68738.1 - 0.0017 18.0 0.4 0.0031 17.2 0.4 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_ATPase PF09818.9 EME68738.1 - 0.0021 16.9 3.3 0.55 9.0 0.0 2.2 2 0 0 2 2 2 2 Predicted ATPase of the ABC class AAA_30 PF13604.6 EME68738.1 - 0.0024 17.6 0.0 0.0034 17.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.6 EME68738.1 - 0.0034 17.6 0.1 0.011 16.0 0.1 1.8 2 0 0 2 2 2 1 AAA domain AAA_5 PF07728.14 EME68738.1 - 0.0063 16.5 0.8 1.6 8.7 0.0 2.2 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_23 PF13476.6 EME68738.1 - 0.0084 16.6 0.4 0.012 16.1 0.4 1.2 1 0 0 1 1 1 1 AAA domain AAA_24 PF13479.6 EME68738.1 - 0.011 15.5 0.4 0.084 12.6 0.2 2.0 2 0 0 2 2 2 0 AAA domain MobB PF03205.14 EME68738.1 - 0.011 15.7 0.0 0.02 14.8 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.6 EME68738.1 - 0.014 15.7 1.5 0.019 15.2 0.4 2.0 2 1 0 2 2 1 0 AAA domain Pox_A32 PF04665.12 EME68738.1 - 0.029 13.8 0.9 0.045 13.2 0.9 1.2 1 0 0 1 1 1 0 Poxvirus A32 protein ATPase_2 PF01637.18 EME68738.1 - 0.032 14.1 0.1 0.051 13.5 0.1 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea NACHT PF05729.12 EME68738.1 - 0.038 13.9 2.0 0.05 13.5 0.4 1.9 2 0 0 2 2 2 0 NACHT domain Zeta_toxin PF06414.12 EME68738.1 - 0.043 13.1 0.0 0.066 12.5 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin MMR_HSR1 PF01926.23 EME68738.1 - 0.073 13.2 0.1 0.21 11.7 0.1 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase SRP54 PF00448.22 EME68738.1 - 0.075 12.6 0.0 0.11 12.1 0.0 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain FtsK_SpoIIIE PF01580.18 EME68738.1 - 0.11 11.8 1.4 0.15 11.4 0.5 1.6 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_33 PF13671.6 EME68738.1 - 0.15 12.2 0.1 0.25 11.5 0.1 1.4 1 0 0 1 1 1 0 AAA domain SMC_N PF02463.19 EME68738.1 - 0.16 11.4 0.4 7.8 5.9 0.2 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain Adeno_IVa2 PF02456.15 EME68738.1 - 0.17 10.6 0.1 1.7 7.3 0.0 2.0 2 0 0 2 2 2 0 Adenovirus IVa2 protein ATP-synt_ab PF00006.25 EME68738.1 - 0.19 11.4 0.1 0.28 10.8 0.1 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain DLIC PF05783.11 EME68738.1 - 0.19 10.5 0.3 0.33 9.7 0.3 1.3 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) DAP3 PF10236.9 EME68738.1 - 0.36 10.0 0.5 1.1 8.4 0.7 1.6 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 DUF2075 PF09848.9 EME68738.1 - 0.36 10.0 0.4 0.51 9.5 0.4 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) MlaD PF02470.20 EME68739.1 - 8.7e-12 45.2 0.0 2.5e-11 43.7 0.0 1.8 1 0 0 1 1 1 1 MlaD protein FlgN PF05130.12 EME68739.1 - 0.00022 21.7 2.2 0.00032 21.2 2.2 1.3 1 0 0 1 1 1 1 FlgN protein Baculo_PEP_C PF04513.12 EME68739.1 - 0.0016 18.5 11.0 0.0021 18.1 4.5 2.3 1 1 1 2 2 2 1 Baculovirus polyhedron envelope protein, PEP, C terminus DUF948 PF06103.11 EME68739.1 - 0.01 16.1 9.4 0.27 11.5 0.0 3.9 2 1 1 3 3 2 0 Bacterial protein of unknown function (DUF948) DUF2205 PF10224.9 EME68739.1 - 0.014 15.4 0.9 0.075 13.0 0.1 2.2 1 1 1 2 2 2 0 Short coiled-coil protein DUF1664 PF07889.12 EME68739.1 - 0.015 15.3 2.2 0.047 13.7 0.7 2.2 1 1 0 2 2 2 0 Protein of unknown function (DUF1664) Bacillus_HBL PF05791.11 EME68739.1 - 0.017 15.0 2.3 0.16 11.8 0.7 2.2 1 1 1 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) Apolipoprotein PF01442.18 EME68739.1 - 0.019 14.8 0.8 0.04 13.8 0.8 1.6 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain BORCS6 PF10157.9 EME68739.1 - 0.02 15.1 1.5 2.5 8.3 0.5 2.5 1 1 1 2 2 2 0 BLOC-1-related complex sub-unit 6 DUF1351 PF07083.11 EME68739.1 - 0.024 14.4 0.1 0.036 13.8 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1351) Mce4_CUP1 PF11887.8 EME68739.1 - 0.031 13.7 2.2 0.075 12.5 1.8 1.7 1 1 0 1 1 1 0 Cholesterol uptake porter CUP1 of Mce4, putative SpecificRecomb PF10136.9 EME68739.1 - 0.04 12.2 0.2 0.059 11.7 0.2 1.2 1 0 0 1 1 1 0 Site-specific recombinase Fib_alpha PF08702.10 EME68739.1 - 0.066 13.4 1.3 0.11 12.7 1.3 1.4 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family Laminin_II PF06009.12 EME68739.1 - 0.071 13.1 2.3 4 7.5 0.1 2.7 1 1 1 2 2 2 0 Laminin Domain II WD40_alt PF14077.6 EME68739.1 - 0.088 12.7 0.0 1.4 8.8 0.0 2.2 2 0 0 2 2 2 0 Alternative WD40 repeat motif DASH_Duo1 PF08651.10 EME68739.1 - 0.09 12.6 2.7 3.6 7.4 0.0 3.1 1 1 2 3 3 3 0 DASH complex subunit Duo1 Z1 PF10593.9 EME68739.1 - 0.12 11.9 0.2 0.24 10.9 0.2 1.5 1 1 0 1 1 1 0 Z1 domain IFT57 PF10498.9 EME68739.1 - 0.12 11.3 0.2 0.21 10.5 0.2 1.3 1 0 0 1 1 1 0 Intra-flagellar transport protein 57 COG2 PF06148.11 EME68739.1 - 0.12 12.4 0.6 1.3 9.1 0.2 2.3 1 1 2 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 Translin PF01997.16 EME68739.1 - 0.14 12.1 0.2 0.26 11.3 0.2 1.4 1 0 0 1 1 1 0 Translin family AHSP PF09236.10 EME68739.1 - 0.19 12.2 0.0 0.75 10.3 0.0 1.9 2 0 0 2 2 2 0 Alpha-haemoglobin stabilising protein NPV_P10 PF05531.12 EME68739.1 - 0.47 10.9 3.8 1.7 9.2 0.6 2.9 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein ABC_trans_aux PF03886.13 EME68740.1 - 8.9e-16 57.9 0.5 1e-15 57.7 0.5 1.1 1 0 0 1 1 1 1 ABC-type transport auxiliary lipoprotein component tRNA_U5-meth_tr PF05958.11 EME68741.1 - 4.5e-12 45.6 0.0 1.1e-10 41.0 0.0 2.0 2 0 0 2 2 2 2 tRNA (Uracil-5-)-methyltransferase HPTransfase PF10090.9 EME68742.1 - 2.6e-24 85.4 0.1 3.8e-24 84.9 0.1 1.2 1 0 0 1 1 1 1 Histidine phosphotransferase C-terminal domain CheW PF01584.19 EME68743.1 - 1.6e-32 112.0 5.6 2.7e-22 78.9 1.1 2.4 2 0 0 2 2 2 2 CheW-like domain Response_reg PF00072.24 EME68743.1 - 1.1e-19 70.6 0.0 2.6e-19 69.5 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain Hpt PF01627.23 EME68743.1 - 1.1e-16 60.8 0.0 3.6e-16 59.2 0.0 1.9 1 0 0 1 1 1 1 Hpt domain HATPase_c PF02518.26 EME68743.1 - 1.4e-15 57.7 0.4 3.1e-15 56.7 0.4 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H-kinase_dim PF02895.14 EME68743.1 - 3.7e-15 56.1 2.2 1.1e-14 54.5 2.2 1.9 1 0 0 1 1 1 1 Signal transducing histidine kinase, homodimeric domain SPESP1 PF15754.5 EME68743.1 - 0.098 11.8 0.7 0.16 11.1 0.7 1.2 1 0 0 1 1 1 0 Sperm equatorial segment protein 1 CheW PF01584.19 EME68744.1 - 3.6e-26 91.5 0.1 4.3e-26 91.2 0.1 1.0 1 0 0 1 1 1 1 CheW-like domain Response_reg PF00072.24 EME68745.1 - 3e-29 101.4 0.0 3.3e-29 101.3 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain Response_reg PF00072.24 EME68746.1 - 1.8e-25 89.3 0.4 2e-25 89.1 0.4 1.0 1 0 0 1 1 1 1 Response regulator receiver domain Nitro_FeMo-Co PF02579.17 EME68746.1 - 0.017 15.4 0.2 0.025 14.9 0.2 1.3 1 0 0 1 1 1 0 Dinitrogenase iron-molybdenum cofactor OpuAC PF04069.12 EME68746.1 - 0.12 12.0 0.1 0.23 11.0 0.1 1.5 2 0 0 2 2 2 0 Substrate binding domain of ABC-type glycine betaine transport system LysR_substrate PF03466.20 EME68747.1 - 9.8e-43 145.9 4.2 9.8e-43 145.9 4.2 2.0 2 1 1 3 3 3 1 LysR substrate binding domain HTH_1 PF00126.27 EME68747.1 - 4e-20 71.5 1.5 1e-19 70.3 1.5 1.7 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_30 PF13556.6 EME68747.1 - 0.00077 19.2 0.6 0.0018 18.0 0.6 1.6 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain MarR_2 PF12802.7 EME68747.1 - 0.0011 18.8 0.7 0.0033 17.3 0.2 2.0 2 0 0 2 2 2 1 MarR family HTH_28 PF13518.6 EME68747.1 - 0.0014 18.7 0.4 0.0046 17.1 0.1 2.0 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 EME68747.1 - 0.0028 17.0 0.0 0.0071 15.7 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_AsnC-type PF13404.6 EME68747.1 - 0.0037 17.1 0.3 0.0078 16.0 0.3 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 EME68747.1 - 0.013 15.1 0.1 0.023 14.3 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 EME68747.1 - 0.047 13.5 0.8 0.14 12.0 0.8 1.9 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_20 PF12840.7 EME68747.1 - 0.058 13.5 1.1 0.14 12.3 1.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_8 PF02954.19 EME68747.1 - 0.081 12.7 0.1 0.19 11.5 0.1 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_5 PF01022.20 EME68747.1 - 0.13 12.1 0.0 0.31 10.9 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family TauE PF01925.19 EME68748.1 - 9.3e-43 146.5 39.8 1.1e-42 146.3 39.8 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE HATPase_c PF02518.26 EME68749.1 - 6.9e-27 94.2 0.0 4.6e-26 91.5 0.0 2.2 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHASE5 PF17149.4 EME68749.1 - 8.2e-14 51.4 0.1 2.9e-13 49.7 0.0 2.0 2 0 0 2 2 2 1 Periplasmic sensor domain found in signal transduction proteins HisKA PF00512.25 EME68749.1 - 2.7e-11 43.4 1.7 3.6e-11 42.9 0.0 2.2 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.6 EME68749.1 - 0.11 12.4 0.0 0.27 11.2 0.0 1.6 1 0 0 1 1 1 0 GHKL domain ApoLp-III PF07464.11 EME68749.1 - 0.12 12.4 0.0 0.24 11.5 0.0 1.5 1 0 0 1 1 1 0 Apolipophorin-III precursor (apoLp-III) ZapB PF06005.12 EME68749.1 - 0.14 12.6 0.9 0.52 10.8 0.9 2.0 1 0 0 1 1 1 0 Cell division protein ZapB SBP_bac_3 PF00497.20 EME68750.1 - 0.00081 18.9 0.0 0.00096 18.6 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 CorA PF01544.18 EME68751.1 - 1.4e-59 201.8 0.0 1.8e-59 201.5 0.0 1.0 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein DUF5610 PF18433.1 EME68751.1 - 0.035 14.6 0.1 0.068 13.7 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF5610) EAL PF00563.20 EME68752.1 - 2.4e-55 187.7 0.0 3.4e-55 187.2 0.0 1.2 1 0 0 1 1 1 1 EAL domain PAS_4 PF08448.10 EME68752.1 - 3.1e-06 27.4 0.1 1e-05 25.8 0.1 1.9 1 0 0 1 1 1 1 PAS fold Hemerythrin PF01814.23 EME68753.1 - 1.3e-13 51.7 5.3 1.6e-13 51.5 5.3 1.0 1 0 0 1 1 1 1 Hemerythrin HHE cation binding domain UPF0149 PF03695.13 EME68753.1 - 0.0086 16.4 0.1 0.019 15.3 0.0 1.6 2 0 0 2 2 2 1 Uncharacterised protein family (UPF0149) UvrD-helicase PF00580.21 EME68755.1 - 2.9e-52 178.2 0.0 1.2e-26 94.0 0.0 2.4 2 1 1 3 3 3 2 UvrD/REP helicase N-terminal domain UvrD_C PF13361.6 EME68755.1 - 3.7e-31 108.8 0.0 1.8e-19 70.4 0.0 2.1 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain AAA_19 PF13245.6 EME68755.1 - 1e-26 94.0 0.0 2e-26 93.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain UvrD_C_2 PF13538.6 EME68755.1 - 1.5e-13 50.4 0.0 2.2e-12 46.6 0.0 2.7 2 0 0 2 2 2 1 UvrD-like helicase C-terminal domain AAA_30 PF13604.6 EME68755.1 - 1.4e-08 34.7 1.2 0.00032 20.5 0.0 2.9 3 0 0 3 3 3 2 AAA domain Viral_helicase1 PF01443.18 EME68755.1 - 0.0021 17.9 0.1 0.41 10.3 0.0 3.0 3 0 0 3 3 3 1 Viral (Superfamily 1) RNA helicase AAA_11 PF13086.6 EME68755.1 - 0.023 14.5 0.0 0.11 12.3 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 EME68755.1 - 0.025 14.8 0.0 2.3 8.5 0.0 2.6 2 0 0 2 2 2 0 AAA domain AAA_12 PF13087.6 EME68755.1 - 0.057 13.0 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain Apolipoprotein PF01442.18 EME68756.1 - 1.7e-11 44.4 105.4 0.0013 18.6 21.3 6.0 1 1 5 6 6 6 6 Apolipoprotein A1/A4/E domain Phasin_2 PF09361.10 EME68756.1 - 0.0049 17.1 10.8 0.0097 16.2 2.6 10.5 2 2 9 12 12 11 3 Phasin protein PspB PF06667.12 EME68756.1 - 0.031 14.3 16.8 0.062 13.4 0.0 5.7 5 0 0 5 5 5 0 Phage shock protein B Prominin PF05478.11 EME68756.1 - 0.16 9.9 32.2 0.28 9.1 6.0 4.6 1 1 2 4 4 4 0 Prominin CdvA PF18822.1 EME68756.1 - 0.35 10.7 25.8 3.8 7.3 0.0 7.8 6 3 2 8 8 8 0 CdvA-like coiled-coil domain Utp12 PF04003.12 EME68756.1 - 0.57 10.5 7.7 5.3 7.4 0.0 5.2 4 2 1 6 6 6 0 Dip2/Utp12 Family Tn7_Tnp_TnsA_C PF08721.11 EME68756.1 - 1.3 9.7 8.8 11 6.7 0.4 4.6 5 0 0 5 5 5 0 TnsA endonuclease C terminal DUF1664 PF07889.12 EME68756.1 - 1.5 8.8 44.6 1.1 9.3 0.1 7.8 2 2 5 8 8 8 0 Protein of unknown function (DUF1664) Gp-FAR-1 PF05823.12 EME68756.1 - 1.7 9.0 24.3 8.8 6.7 0.2 6.4 4 2 0 6 6 6 0 Nematode fatty acid retinoid binding protein (Gp-FAR-1) Baculo_PEP_C PF04513.12 EME68756.1 - 2.7 8.0 46.7 0.063 13.3 5.2 7.8 1 1 6 8 8 8 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF2935 PF11155.8 EME68756.1 - 7.5 6.9 22.3 4.5 7.6 0.1 6.8 4 2 1 6 6 6 0 Domain of unknown function (DUF2935) Tup_N PF08581.10 EME68756.1 - 9.4 6.6 15.4 1 9.7 0.1 5.9 6 1 1 7 7 6 0 Tup N-terminal ApoO PF09769.9 EME68756.1 - 9.5 6.2 23.0 5.3 7.0 0.2 6.7 6 2 1 7 7 7 0 Apolipoprotein O OmpA PF00691.20 EME68757.1 - 1.9e-30 105.1 5.1 4.3e-16 59.1 1.6 2.3 2 0 0 2 2 2 2 OmpA family Pilus_CpaD PF09476.10 EME68757.1 - 0.00054 19.8 7.0 0.048 13.4 1.6 2.2 2 0 0 2 2 2 2 Pilus biogenesis CpaD protein (pilus_cpaD) Herpes_UL51 PF04540.13 EME68757.1 - 0.1 12.3 4.3 0.28 10.9 0.9 2.2 2 0 0 2 2 2 0 Herpesvirus UL51 protein APH PF01636.23 EME68757.1 - 0.99 9.3 6.2 0.5 10.2 4.0 1.8 2 1 0 2 2 2 0 Phosphotransferase enzyme family LysR_substrate PF03466.20 EME68759.1 - 1.9e-53 180.9 10.9 3.2e-53 180.2 10.9 1.3 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 EME68759.1 - 1.3e-20 73.0 2.0 1.3e-20 73.0 2.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family DUF475 PF04332.15 EME68760.1 - 1.8e-109 366.1 16.8 2.6e-109 365.6 16.8 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF475) TerC PF03741.16 EME68760.1 - 1.1e-19 70.9 17.5 4.2e-19 68.9 15.3 2.6 1 1 0 1 1 1 1 Integral membrane protein TerC family LapA_dom PF06305.11 EME68760.1 - 2.4 8.1 0.0 2.4 8.1 0.0 4.1 3 1 0 3 3 3 0 Lipopolysaccharide assembly protein A domain Sigma70_r2 PF04542.14 EME68761.1 - 8.4e-17 60.7 0.3 2.5e-16 59.2 0.0 2.0 2 0 0 2 2 2 1 Sigma-70 region 2 Sigma70_r4 PF04545.16 EME68761.1 - 1.8e-12 46.6 6.7 5.9e-12 44.9 6.7 2.0 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r3 PF04539.16 EME68761.1 - 0.002 18.2 0.7 0.49 10.5 0.1 2.3 2 0 0 2 2 2 2 Sigma-70 region 3 Sigma70_r1_2 PF00140.20 EME68761.1 - 0.012 15.6 0.6 0.033 14.2 0.1 2.1 2 0 0 2 2 2 0 Sigma-70 factor, region 1.2 GntR PF00392.21 EME68761.1 - 0.67 9.7 5.5 0.38 10.4 1.5 2.6 3 0 0 3 3 3 0 Bacterial regulatory proteins, gntR family dUTPase PF00692.19 EME68763.1 - 3.6e-06 26.7 0.0 1.2e-05 25.0 0.0 1.7 2 0 0 2 2 2 1 dUTPase Flagellar_put PF12611.8 EME68763.1 - 0.013 15.2 0.3 0.023 14.4 0.3 1.4 1 0 0 1 1 1 0 Putative flagellar AAA_33 PF13671.6 EME68764.1 - 1.2e-21 77.3 0.1 2.5e-20 73.1 0.0 2.4 2 0 0 2 2 2 1 AAA domain APH PF01636.23 EME68764.1 - 3.2e-08 33.8 7.7 3.2e-08 33.8 7.7 2.4 2 1 0 2 2 2 1 Phosphotransferase enzyme family Zeta_toxin PF06414.12 EME68764.1 - 4.6e-07 29.3 0.0 7e-07 28.7 0.0 1.2 1 0 0 1 1 1 1 Zeta toxin CPT PF07931.12 EME68764.1 - 0.00016 21.6 0.0 0.00038 20.3 0.0 1.6 1 0 0 1 1 1 1 Chloramphenicol phosphotransferase-like protein AAA_18 PF13238.6 EME68764.1 - 0.00033 21.2 0.1 0.037 14.6 0.0 2.8 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.6 EME68764.1 - 0.0024 18.3 2.0 0.33 11.3 0.0 2.5 2 1 0 2 2 2 2 AAA ATPase domain Usp PF00582.26 EME68765.1 - 5.5e-17 62.6 5.9 2e-09 38.1 1.2 3.4 2 2 0 2 2 2 2 Universal stress protein family NUDIX PF00293.28 EME68766.1 - 1.1e-08 35.2 0.4 2.2e-08 34.2 0.1 1.7 2 0 0 2 2 2 1 NUDIX domain COQ7 PF03232.13 EME68767.1 - 6e-72 241.0 0.1 6.7e-72 240.8 0.1 1.0 1 0 0 1 1 1 1 Ubiquinone biosynthesis protein COQ7 Rubrerythrin PF02915.17 EME68767.1 - 3.6e-09 37.1 0.0 5.1e-09 36.6 0.0 1.3 1 0 0 1 1 1 1 Rubrerythrin DsbB PF02600.16 EME68768.1 - 4e-30 105.2 10.8 4.7e-30 105.0 10.8 1.0 1 0 0 1 1 1 1 Disulfide bond formation protein DsbB MeaB PF03308.16 EME68769.1 - 1.4e-70 237.3 4.2 1.8e-70 237.0 4.2 1.0 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB ATP_bind_1 PF03029.17 EME68769.1 - 9.3e-07 28.9 0.0 0.0013 18.6 0.0 3.1 3 0 0 3 3 3 1 Conserved hypothetical ATP binding protein RsgA_GTPase PF03193.16 EME68769.1 - 1.7e-05 24.8 0.0 0.0094 15.9 0.0 2.4 2 0 0 2 2 2 1 RsgA GTPase AAA_30 PF13604.6 EME68769.1 - 6.8e-05 22.7 1.2 8.4e-05 22.4 0.1 1.7 2 0 0 2 2 2 1 AAA domain cobW PF02492.19 EME68769.1 - 0.00019 21.1 0.3 0.0048 16.5 0.3 2.4 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MMR_HSR1 PF01926.23 EME68769.1 - 0.00022 21.3 0.1 0.00054 20.0 0.1 1.8 1 1 0 1 1 1 1 50S ribosome-binding GTPase NTPase_1 PF03266.15 EME68769.1 - 0.0013 18.6 0.1 0.0021 18.0 0.1 1.4 1 0 0 1 1 1 1 NTPase AAA_18 PF13238.6 EME68769.1 - 0.004 17.7 0.0 0.022 15.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain ABC_tran PF00005.27 EME68769.1 - 0.0045 17.5 0.0 0.0091 16.5 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_29 PF13555.6 EME68769.1 - 0.0072 16.0 0.0 0.015 15.0 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain GTP_EFTU PF00009.27 EME68769.1 - 0.0083 15.7 0.0 0.49 9.9 0.0 2.2 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain AAA_16 PF13191.6 EME68769.1 - 0.0097 16.3 0.1 0.024 15.0 0.1 1.7 1 0 0 1 1 1 1 AAA ATPase domain NACHT PF05729.12 EME68769.1 - 0.019 14.9 0.3 0.038 13.9 0.3 1.5 1 0 0 1 1 1 0 NACHT domain AAA PF00004.29 EME68769.1 - 0.029 14.8 0.1 0.17 12.3 0.1 2.2 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) Ploopntkinase3 PF18751.1 EME68769.1 - 0.035 14.0 1.3 0.45 10.4 0.0 2.5 3 0 0 3 3 2 0 P-loop Nucleotide Kinase3 RNA_helicase PF00910.22 EME68769.1 - 0.036 14.5 0.0 0.061 13.7 0.0 1.4 1 0 0 1 1 1 0 RNA helicase AAA_22 PF13401.6 EME68769.1 - 0.046 14.0 0.0 0.096 13.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain FeoB_N PF02421.18 EME68769.1 - 0.069 12.7 0.1 1 8.8 0.1 2.2 2 0 0 2 2 2 0 Ferrous iron transport protein B NB-ARC PF00931.22 EME68769.1 - 0.085 12.0 0.0 0.13 11.4 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_28 PF13521.6 EME68769.1 - 0.093 13.0 1.3 0.26 11.5 0.1 2.2 3 0 0 3 3 3 0 AAA domain AAA_33 PF13671.6 EME68769.1 - 0.099 12.8 0.1 0.24 11.6 0.1 1.7 1 0 0 1 1 1 0 AAA domain MobB PF03205.14 EME68769.1 - 0.14 12.1 0.0 0.56 10.1 0.0 2.0 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B IstB_IS21 PF01695.17 EME68769.1 - 0.18 11.5 0.0 0.38 10.5 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein PIF1 PF05970.14 EME68769.1 - 0.19 10.9 0.1 2.2 7.3 0.0 2.0 2 0 0 2 2 2 0 PIF1-like helicase GGDEF PF00990.21 EME68770.1 - 2.1e-52 177.1 0.0 7.9e-52 175.3 0.0 1.9 2 0 0 2 2 2 1 Diguanylate cyclase, GGDEF domain PAS_9 PF13426.7 EME68770.1 - 3.1e-20 72.4 0.0 4.8e-13 49.2 0.0 2.5 2 0 0 2 2 2 2 PAS domain PAS PF00989.25 EME68770.1 - 7.5e-20 71.0 0.0 9.3e-13 48.2 0.0 2.6 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.7 EME68770.1 - 1.9e-13 50.1 0.2 8.9e-09 35.2 0.0 2.7 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.10 EME68770.1 - 7.1e-11 42.3 0.0 8e-07 29.3 0.0 2.6 2 0 0 2 2 2 2 PAS fold DUF1476 PF07345.11 EME68771.1 - 4.3e-34 116.9 2.8 4.8e-34 116.8 2.8 1.0 1 0 0 1 1 1 1 ATPase inhibitor subunit zeta TANGO2 PF05742.12 EME68772.1 - 2.7e-27 96.4 0.0 3.4e-27 96.1 0.0 1.1 1 0 0 1 1 1 1 Transport and Golgi organisation 2 SAICAR_synt PF01259.18 EME68773.1 - 5.2e-62 209.7 0.0 5.8e-62 209.6 0.0 1.0 1 0 0 1 1 1 1 SAICAR synthetase PurS PF02700.14 EME68774.1 - 2.6e-34 117.2 0.0 2.9e-34 117.1 0.0 1.0 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase His_Phos_1 PF00300.22 EME68776.1 - 1.3e-41 142.5 0.1 1.5e-41 142.2 0.1 1.0 1 0 0 1 1 1 1 Histidine phosphatase superfamily (branch 1) MarR_2 PF12802.7 EME68777.1 - 3e-10 39.8 0.5 5.6e-10 39.0 0.5 1.4 1 0 0 1 1 1 1 MarR family MarR PF01047.22 EME68777.1 - 4.4e-06 26.5 0.0 7.6e-06 25.8 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 EME68777.1 - 1.7e-05 25.2 0.1 2.4e-05 24.7 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.7 EME68777.1 - 0.0097 16.0 0.1 0.019 15.0 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_1 PF00126.27 EME68777.1 - 0.042 13.8 1.2 0.066 13.2 1.2 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Alpha-mann_mid PF09261.11 EME68777.1 - 0.078 13.1 0.0 0.091 12.9 0.0 1.2 1 0 0 1 1 1 0 Alpha mannosidase middle domain DLH PF01738.18 EME68778.1 - 1.1e-66 224.6 0.0 1.4e-66 224.1 0.0 1.1 1 0 0 1 1 1 1 Dienelactone hydrolase family Peptidase_S9 PF00326.21 EME68778.1 - 6.3e-05 22.6 0.6 0.19 11.2 0.0 2.2 1 1 1 2 2 2 2 Prolyl oligopeptidase family Peptidase_S15 PF02129.18 EME68778.1 - 0.0023 17.6 0.4 0.0048 16.5 0.3 1.5 1 1 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) Chlorophyllase PF07224.11 EME68778.1 - 0.0023 17.0 0.0 0.0031 16.6 0.0 1.2 1 0 0 1 1 1 1 Chlorophyllase BAAT_C PF08840.11 EME68778.1 - 0.011 15.7 0.0 2.4 8.0 0.0 2.1 2 0 0 2 2 2 0 BAAT / Acyl-CoA thioester hydrolase C terminal Chlorophyllase2 PF12740.7 EME68778.1 - 0.019 13.9 0.0 0.024 13.5 0.0 1.2 1 0 0 1 1 1 0 Chlorophyllase enzyme Hydrolase_4 PF12146.8 EME68778.1 - 0.034 13.4 0.0 2 7.6 0.0 2.2 1 1 1 2 2 2 0 Serine aminopeptidase, S33 Abhydrolase_3 PF07859.13 EME68778.1 - 0.084 12.7 2.3 0.41 10.5 0.1 2.2 1 1 1 2 2 2 0 alpha/beta hydrolase fold Abhydrolase_1 PF00561.20 EME68778.1 - 0.092 12.4 0.0 1.3 8.6 0.1 2.0 1 1 1 2 2 2 0 alpha/beta hydrolase fold YGGT PF02325.17 EME68779.1 - 1.8e-17 63.5 10.0 2.4e-17 63.1 10.0 1.2 1 0 0 1 1 1 1 YGGT family RSF PF14876.6 EME68779.1 - 0.48 9.3 2.6 1.1 8.2 0.4 1.9 1 1 1 2 2 2 0 Respiratory growth transcriptional regulator DUF167 PF02594.16 EME68780.1 - 3.8e-25 87.8 0.5 4.3e-25 87.6 0.5 1.1 1 0 0 1 1 1 1 Uncharacterised ACR, YggU family COG1872 Nas2_N PF18265.1 EME68780.1 - 0.016 15.1 0.0 0.02 14.8 0.0 1.2 1 0 0 1 1 1 0 Nas2 N_terminal domain THF_DHG_CYH_C PF02882.19 EME68781.1 - 5.1e-67 224.2 0.9 8.9e-67 223.4 0.9 1.4 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THF_DHG_CYH PF00763.23 EME68781.1 - 4.1e-38 130.2 0.0 5.8e-38 129.7 0.0 1.2 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain OCD_Mu_crystall PF02423.15 EME68781.1 - 0.024 13.6 0.1 0.036 13.0 0.1 1.2 1 0 0 1 1 1 0 Ornithine cyclodeaminase/mu-crystallin family NnrU PF07298.11 EME68782.1 - 2e-56 190.8 10.3 2.3e-56 190.7 10.3 1.0 1 0 0 1 1 1 1 NnrU protein PmbA_TldD PF01523.16 EME68783.1 - 3.9e-58 197.5 1.2 5e-58 197.2 1.2 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase Pantoate_ligase PF02569.15 EME68784.1 - 2e-96 322.3 0.0 2.3e-96 322.1 0.0 1.0 1 0 0 1 1 1 1 Pantoate-beta-alanine ligase Pantoate_transf PF02548.15 EME68785.1 - 8.9e-106 353.0 0.2 1e-105 352.8 0.2 1.0 1 0 0 1 1 1 1 Ketopantoate hydroxymethyltransferase HTH_Crp_2 PF13545.6 EME68786.1 - 6.7e-20 70.8 0.0 1.1e-19 70.1 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Crp PF00325.20 EME68786.1 - 4.9e-17 61.3 0.0 1e-16 60.2 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, crp family cNMP_binding PF00027.29 EME68786.1 - 4e-15 55.6 0.0 8.3e-15 54.6 0.0 1.4 1 0 0 1 1 1 1 Cyclic nucleotide-binding domain Sigma70_r4_2 PF08281.12 EME68786.1 - 0.0033 17.1 0.1 1.3 8.7 0.0 2.6 2 0 0 2 2 2 2 Sigma-70, region 4 HTH_23 PF13384.6 EME68786.1 - 0.012 15.4 0.0 0.049 13.4 0.0 2.1 2 0 0 2 2 2 0 Homeodomain-like domain HTH_24 PF13412.6 EME68786.1 - 0.016 14.8 0.0 0.051 13.1 0.0 1.9 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 EME68786.1 - 0.04 13.8 0.0 0.28 11.1 0.0 2.4 4 0 0 4 4 4 0 MarR family HTH_Tnp_ISL3 PF13542.6 EME68786.1 - 0.068 12.6 0.0 0.23 10.9 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 HTH_11 PF08279.12 EME68786.1 - 0.078 12.9 0.0 0.17 11.9 0.0 1.6 1 0 0 1 1 1 0 HTH domain MarR PF01047.22 EME68786.1 - 0.12 12.3 0.0 0.31 11.0 0.0 1.6 1 0 0 1 1 1 0 MarR family HTH_36 PF13730.6 EME68786.1 - 0.15 12.0 0.0 0.33 10.9 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain FixS PF03597.15 EME68787.1 - 1.2e-21 76.2 3.2 1.4e-21 75.9 3.2 1.1 1 0 0 1 1 1 1 Cytochrome oxidase maturation protein cbb3-type E1-E2_ATPase PF00122.20 EME68788.1 - 1.8e-46 158.0 0.7 1.8e-46 158.0 0.7 2.4 3 0 0 3 3 3 1 E1-E2 ATPase Hydrolase PF00702.26 EME68788.1 - 3.3e-30 106.0 0.2 1e-29 104.4 0.2 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 EME68788.1 - 2.1e-07 31.3 0.0 7e-07 29.6 0.0 2.0 2 0 0 2 2 2 1 Heavy-metal-associated domain ATPase-cat_bd PF12156.8 EME68788.1 - 7e-07 29.9 0.0 1.3e-06 29.0 0.0 1.3 1 0 0 1 1 1 1 Putative metal-binding domain of cation transport ATPase Hydrolase_3 PF08282.12 EME68788.1 - 0.057 13.2 0.0 0.097 12.4 0.0 1.3 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase HAD PF12710.7 EME68788.1 - 0.058 13.8 0.2 0.21 12.0 0.2 2.0 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase FixH PF05751.11 EME68789.1 - 1.1e-43 148.9 0.1 1.2e-43 148.7 0.1 1.0 1 0 0 1 1 1 1 FixH YtkA PF13115.6 EME68789.1 - 6.8e-09 36.2 0.1 1e-08 35.7 0.1 1.3 1 0 0 1 1 1 1 YtkA-like Invasin_D3 PF09134.10 EME68789.1 - 0.011 16.0 0.0 0.017 15.4 0.0 1.3 1 0 0 1 1 1 0 Invasin, domain 3 Big_1 PF02369.16 EME68789.1 - 0.018 15.0 0.0 0.044 13.8 0.0 1.6 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 1) Fer4_18 PF13746.6 EME68790.1 - 2.6e-40 137.2 6.9 5.9e-40 136.0 6.9 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain FixG_C PF11614.8 EME68790.1 - 2.4e-28 98.7 0.0 3.4e-28 98.3 0.0 1.2 1 0 0 1 1 1 1 IG-like fold at C-terminal of FixG, putative oxidoreductase Fer4_7 PF12838.7 EME68790.1 - 1.5e-09 38.2 5.5 1.6e-05 25.4 1.7 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 EME68790.1 - 2.3e-07 31.3 7.0 0.00016 22.2 1.9 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 EME68790.1 - 5.7e-07 29.6 9.7 0.00049 20.2 4.3 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_5 PF12801.7 EME68790.1 - 9.1e-07 28.7 2.6 9.1e-07 28.7 2.6 3.4 4 0 0 4 4 3 1 4Fe-4S binding domain Fer4_8 PF13183.6 EME68790.1 - 1.8e-06 28.3 5.9 0.0021 18.5 1.6 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 EME68790.1 - 2.8e-05 25.0 6.1 0.0055 17.6 1.8 2.5 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4 PF00037.27 EME68790.1 - 0.00038 20.1 3.0 0.00038 20.1 3.0 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 EME68790.1 - 0.00065 19.7 15.7 0.0015 18.5 2.8 2.6 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_2 PF12797.7 EME68790.1 - 0.004 17.2 3.6 0.004 17.2 3.6 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.6 EME68790.1 - 0.0043 17.1 14.9 0.051 13.7 13.9 2.5 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.7 EME68790.1 - 0.0047 17.3 17.2 0.011 16.2 2.3 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.6 EME68790.1 - 0.056 13.6 17.5 0.94 9.7 15.7 2.9 1 1 1 2 2 2 0 4Fe-4S dicluster domain DUF3040 PF11239.8 EME68790.1 - 0.15 12.3 2.8 27 5.1 0.0 3.4 3 0 0 3 3 3 0 Protein of unknown function (DUF3040) Fer4_20 PF14691.6 EME68790.1 - 1.2 8.9 6.4 4.2 7.2 6.4 1.8 1 1 0 1 1 1 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_15 PF13459.6 EME68790.1 - 3 8.7 11.6 7.3 7.4 2.3 2.5 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.6 EME68790.1 - 5 7.8 16.1 1.2 9.7 3.9 2.6 1 1 1 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I FixP_N PF14715.6 EME68791.1 - 9.5e-25 86.1 8.9 1.6e-24 85.4 8.9 1.4 1 0 0 1 1 1 1 N-terminal domain of cytochrome oxidase-cbb3, FixP Cytochrome_CBB3 PF13442.6 EME68791.1 - 3.2e-24 85.0 1.6 3.3e-11 43.3 0.4 2.4 2 0 0 2 2 2 2 Cytochrome C oxidase, cbb3-type, subunit III Cytochrom_C PF00034.21 EME68791.1 - 6.2e-17 62.5 0.3 7.9e-07 30.1 0.0 3.3 2 1 0 2 2 2 2 Cytochrome c Cytochrom_C550 PF14495.6 EME68791.1 - 0.0038 16.9 0.2 1.9 8.2 0.0 2.5 2 1 0 2 2 2 2 Cytochrome c-550 domain Paired_CXXCH_1 PF09699.10 EME68791.1 - 0.14 12.0 1.1 3.1 7.6 0.1 2.3 2 0 0 2 2 2 0 Doubled CXXCH motif (Paired_CXXCH_1) FixQ PF05545.11 EME68792.1 - 2.4e-14 53.0 0.5 2.8e-14 52.8 0.5 1.2 1 0 0 1 1 1 1 Cbb3-type cytochrome oxidase component FixQ SLC3A2_N PF16028.5 EME68792.1 - 0.023 14.3 0.1 0.027 14.0 0.1 1.1 1 0 0 1 1 1 0 Solute carrier family 3 member 2 N-terminus FixO PF02433.15 EME68793.1 - 1e-93 312.8 0.0 1.2e-93 312.6 0.0 1.0 1 0 0 1 1 1 1 Cytochrome C oxidase, mono-heme subunit/FixO Cytochrom_C PF00034.21 EME68793.1 - 6.6e-06 27.2 0.2 0.00033 21.7 0.2 2.3 1 1 0 1 1 1 1 Cytochrome c COX1 PF00115.20 EME68794.1 - 8.3e-119 397.3 61.4 1.1e-118 396.9 61.4 1.2 1 0 0 1 1 1 1 Cytochrome C and Quinol oxidase polypeptide I DUF3084 PF11283.8 EME68794.1 - 0.076 13.0 0.0 0.37 10.8 0.0 2.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3084) Methyltrans_SAM PF10672.9 EME68795.1 - 2.1e-20 73.0 0.0 3.6e-20 72.3 0.0 1.2 1 0 0 1 1 1 1 S-adenosylmethionine-dependent methyltransferase PUA_3 PF17785.1 EME68795.1 - 4.2e-18 64.9 0.0 1e-17 63.7 0.0 1.7 1 0 0 1 1 1 1 PUA-like domain Methyltransf_31 PF13847.6 EME68795.1 - 4.9e-07 29.7 0.0 1.1e-06 28.5 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain Cons_hypoth95 PF03602.15 EME68795.1 - 5.3e-06 26.2 0.0 1.1e-05 25.2 0.0 1.5 1 0 0 1 1 1 1 Conserved hypothetical protein 95 MTS PF05175.14 EME68795.1 - 4.9e-05 22.9 0.0 0.00011 21.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.6 EME68795.1 - 0.0002 22.0 0.1 0.00055 20.6 0.1 1.8 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.16 EME68795.1 - 0.00067 19.5 0.0 0.00096 18.9 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein PrmA PF06325.13 EME68795.1 - 0.0015 18.0 0.1 0.0022 17.4 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_15 PF09445.10 EME68795.1 - 0.0034 17.0 0.0 0.0051 16.4 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase ADH_zinc_N PF00107.26 EME68795.1 - 0.092 12.7 0.8 0.19 11.7 0.8 1.6 1 0 0 1 1 1 0 Zinc-binding dehydrogenase Methyltransf_23 PF13489.6 EME68795.1 - 0.1 12.4 0.1 3.3 7.5 0.0 2.9 3 1 0 3 3 3 0 Methyltransferase domain Methyltransf_11 PF08241.12 EME68795.1 - 0.12 13.1 0.2 0.34 11.6 0.2 1.9 1 1 0 1 1 1 0 Methyltransferase domain UPF0020 PF01170.18 EME68795.1 - 0.12 12.0 0.0 0.39 10.4 0.0 1.8 2 1 0 2 2 2 0 Putative RNA methylase family UPF0020 HTH_3 PF01381.22 EME68796.1 - 0.00029 20.8 0.0 0.00066 19.7 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix HPP PF04982.13 EME68797.1 - 3.9e-32 111.0 14.7 3.9e-32 111.0 14.7 2.3 3 0 0 3 3 3 1 HPP family YesK PF14150.6 EME68797.1 - 0.73 10.1 4.5 0.22 11.7 0.8 2.1 2 0 0 2 2 2 0 YesK-like protein Sdh_cyt PF01127.22 EME68797.1 - 7.8 6.6 10.2 2.1 8.4 2.7 2.2 1 1 1 2 2 2 0 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AA_kinase PF00696.28 EME68798.1 - 4.1e-44 151.0 2.4 4.8e-44 150.8 2.4 1.0 1 0 0 1 1 1 1 Amino acid kinase family GatB_Yqey PF02637.18 EME68798.1 - 0.057 13.3 0.0 0.86 9.5 0.0 2.2 2 0 0 2 2 2 0 GatB domain MMR_HSR1 PF01926.23 EME68799.1 - 2.5e-22 79.1 0.0 3.8e-22 78.5 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 EME68799.1 - 5.5e-09 36.2 0.2 2e-05 24.6 0.0 2.2 2 0 0 2 2 2 2 RsgA GTPase FeoB_N PF02421.18 EME68799.1 - 6.5e-08 32.2 0.1 1.1e-07 31.5 0.1 1.6 1 1 0 1 1 1 1 Ferrous iron transport protein B Dynamin_N PF00350.23 EME68799.1 - 1.1e-06 28.8 0.1 0.00068 19.7 0.1 2.2 1 1 1 2 2 2 2 Dynamin family GTP_EFTU PF00009.27 EME68799.1 - 6.9e-05 22.5 0.1 0.0018 17.9 0.1 2.2 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain Septin PF00735.18 EME68799.1 - 0.00025 20.4 1.0 0.14 11.5 0.1 2.3 2 1 0 2 2 2 2 Septin SRPRB PF09439.10 EME68799.1 - 0.009 15.5 0.0 0.015 14.8 0.0 1.5 1 1 0 1 1 1 1 Signal recognition particle receptor beta subunit cobW PF02492.19 EME68799.1 - 0.019 14.6 0.1 0.048 13.2 0.0 1.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AIG1 PF04548.16 EME68799.1 - 0.056 12.8 0.1 0.11 11.9 0.1 1.5 1 1 0 1 1 1 0 AIG1 family Roc PF08477.13 EME68799.1 - 0.065 13.5 0.0 0.21 11.8 0.0 1.8 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase AAA_29 PF13555.6 EME68799.1 - 0.082 12.7 0.0 0.17 11.7 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain YcgL PF05166.13 EME68799.1 - 0.11 12.9 0.2 0.33 11.3 0.2 1.8 2 0 0 2 2 2 0 YcgL domain ABC_tran PF00005.27 EME68799.1 - 0.11 13.0 0.0 0.22 12.0 0.0 1.4 1 0 0 1 1 1 0 ABC transporter YidC_periplas PF14849.6 EME68800.1 - 1.3e-81 274.6 0.0 1.7e-81 274.2 0.0 1.1 1 0 0 1 1 1 1 YidC periplasmic domain 60KD_IMP PF02096.20 EME68800.1 - 1.4e-59 200.7 10.9 1.9e-59 200.3 10.9 1.2 1 0 0 1 1 1 1 60Kd inner membrane protein YidD PF01809.18 EME68801.1 - 5.1e-29 99.9 0.1 6.4e-29 99.6 0.1 1.1 1 0 0 1 1 1 1 Putative membrane protein insertion efficiency factor Ribonuclease_P PF00825.18 EME68802.1 - 1.8e-23 82.7 0.2 2.1e-23 82.5 0.2 1.0 1 0 0 1 1 1 1 Ribonuclease P SLATT_1 PF18181.1 EME68802.1 - 0.12 12.3 0.0 0.19 11.7 0.0 1.4 1 1 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain 1 Ribosomal_L34 PF00468.17 EME68803.1 - 8.8e-23 80.0 10.1 9.4e-23 79.9 10.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L34 Methyltransf_25 PF13649.6 EME68804.1 - 9.3e-17 61.5 0.0 1.7e-16 60.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 EME68804.1 - 2e-15 57.2 0.0 3.8e-15 56.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 EME68804.1 - 2.7e-14 53.4 0.0 3.6e-14 52.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 EME68804.1 - 4.9e-12 45.9 0.0 6e-12 45.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 EME68804.1 - 1.3e-09 38.7 0.0 2.1e-09 38.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 EME68804.1 - 3.7e-05 23.2 0.0 5e-05 22.8 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.14 EME68804.1 - 4.9e-05 22.9 0.0 7.4e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain FtsJ PF01728.19 EME68804.1 - 0.00064 19.9 0.1 0.0048 17.0 0.0 2.0 1 1 0 2 2 2 1 FtsJ-like methyltransferase Methyltransf_32 PF13679.6 EME68804.1 - 0.002 18.1 0.0 0.003 17.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 EME68804.1 - 0.01 15.5 0.0 0.013 15.1 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW TrkA_N PF02254.18 EME68804.1 - 0.058 13.7 0.0 0.1 12.8 0.0 1.3 1 0 0 1 1 1 0 TrkA-N domain CMAS PF02353.20 EME68804.1 - 0.066 12.5 0.0 0.087 12.1 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase PCMT PF01135.19 EME68804.1 - 0.083 12.6 0.0 0.12 12.1 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) HD_3 PF13023.6 EME68805.1 - 1.3e-52 178.0 0.3 1.6e-52 177.7 0.3 1.0 1 0 0 1 1 1 1 HD domain HD_2 PF12917.7 EME68805.1 - 1.1e-17 64.4 0.1 1.4e-17 64.0 0.1 1.1 1 0 0 1 1 1 1 HD containing hydrolase-like enzyme HD PF01966.22 EME68805.1 - 0.0074 16.5 2.0 0.014 15.6 2.0 1.4 1 0 0 1 1 1 1 HD domain Ribosomal_TL5_C PF14693.6 EME68806.1 - 6.3e-30 103.4 0.2 9.4e-30 102.8 0.2 1.3 1 0 0 1 1 1 1 Ribosomal protein TL5, C-terminal domain Ribosomal_L25p PF01386.19 EME68806.1 - 2.6e-22 79.1 0.0 5.1e-22 78.2 0.0 1.5 1 0 0 1 1 1 1 Ribosomal L25p family Pept_tRNA_hydro PF01195.19 EME68807.1 - 7.8e-53 178.9 0.0 1e-52 178.6 0.0 1.1 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase YchF-GTPase_C PF06071.13 EME68808.1 - 3.1e-41 139.4 0.5 7.7e-41 138.2 0.1 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF933) MMR_HSR1 PF01926.23 EME68808.1 - 4e-24 84.9 0.0 8.1e-24 83.9 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 EME68808.1 - 4e-08 32.9 0.0 1.5e-07 31.1 0.0 2.1 1 1 0 1 1 1 1 Ferrous iron transport protein B Arf PF00025.21 EME68808.1 - 0.17 11.3 0.0 2.4 7.6 0.0 2.3 2 0 0 2 2 2 0 ADP-ribosylation factor family GTP_EFTU PF00009.27 EME68808.1 - 0.18 11.4 0.0 1.5 8.3 0.0 2.1 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain DUF2635 PF10948.8 EME68808.1 - 0.19 11.5 0.4 0.89 9.3 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2635) UbiA PF01040.18 EME68809.1 - 2.1e-30 105.9 24.1 2.7e-30 105.5 24.1 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family GGDEF PF00990.21 EME68811.1 - 1.9e-45 154.5 0.1 5.9e-44 149.6 0.0 2.1 2 0 0 2 2 2 2 Diguanylate cyclase, GGDEF domain RsdA_SigD_bd PF16751.5 EME68811.1 - 0.038 14.2 0.4 0.12 12.6 0.2 1.9 2 0 0 2 2 2 0 Anti-sigma-D factor RsdA to sigma factor binding region DNA_processg_A PF02481.15 EME68812.1 - 4e-71 238.6 0.0 5.2e-71 238.2 0.0 1.1 1 0 0 1 1 1 1 DNA recombination-mediator protein A DprA_WH PF17782.1 EME68812.1 - 0.0038 17.3 0.6 0.016 15.3 0.1 2.3 2 0 0 2 2 2 1 DprA winged helix domain LDcluster4 PF18306.1 EME68812.1 - 0.073 12.7 0.9 0.14 11.7 0.9 1.5 1 1 0 1 1 1 0 SLOG cluster4 family Patatin PF01734.22 EME68813.1 - 4.6e-12 46.5 13.4 6.1e-11 42.9 13.4 2.7 1 1 0 1 1 1 1 Patatin-like phospholipase cNMP_binding PF00027.29 EME68814.1 - 1.5e-20 73.0 0.0 1.9e-20 72.7 0.0 1.1 1 0 0 1 1 1 1 Cyclic nucleotide-binding domain Mem_trans PF03547.18 EME68815.1 - 1.8e-13 49.7 20.2 1.2e-12 46.9 14.0 2.1 1 1 1 2 2 2 2 Membrane transport protein SBF PF01758.16 EME68815.1 - 0.002 17.8 6.2 0.002 17.8 6.2 2.1 2 1 0 2 2 2 1 Sodium Bile acid symporter family Acyl-CoA_dh_1 PF00441.24 EME68816.1 - 1e-40 139.4 0.8 1.7e-40 138.7 0.8 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 EME68816.1 - 3.6e-38 130.7 0.1 8e-38 129.6 0.1 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 EME68816.1 - 2.1e-26 91.9 0.0 4.3e-26 91.0 0.0 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 EME68816.1 - 1.4e-09 38.3 0.0 2.5e-09 37.5 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Carboxyl_trans PF01039.22 EME68817.1 - 6.8e-150 500.0 0.1 8e-150 499.7 0.1 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain MdcE PF06833.11 EME68817.1 - 0.002 17.7 0.0 0.24 10.9 0.0 2.3 2 0 0 2 2 2 2 Malonate decarboxylase gamma subunit (MdcE) ECH_1 PF00378.20 EME68818.1 - 9.1e-57 192.2 0.0 1e-56 192.1 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 EME68818.1 - 1.4e-30 107.0 0.6 5.7e-28 98.4 0.2 1.9 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase CPSase_L_D2 PF02786.17 EME68819.1 - 8.2e-76 254.2 0.0 1.2e-75 253.6 0.0 1.2 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Biotin_carb_N PF00289.22 EME68819.1 - 7.8e-46 155.2 0.6 2.2e-45 153.7 0.6 1.8 1 0 0 1 1 1 1 Biotin carboxylase, N-terminal domain Biotin_carb_C PF02785.19 EME68819.1 - 1.9e-39 134.1 0.0 7.2e-39 132.2 0.0 2.0 2 0 0 2 2 2 1 Biotin carboxylase C-terminal domain Biotin_lipoyl PF00364.22 EME68819.1 - 3.9e-20 71.5 0.5 1e-19 70.1 0.5 1.8 1 0 0 1 1 1 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 EME68819.1 - 3.7e-09 36.3 2.5 2.5e-06 27.2 0.1 2.9 2 1 1 3 3 2 2 Biotin-lipoyl like ATP-grasp PF02222.22 EME68819.1 - 4e-08 33.0 0.0 9.6e-08 31.8 0.0 1.6 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.13 EME68819.1 - 5.7e-08 32.5 0.0 2.1e-07 30.7 0.0 1.8 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus HlyD_3 PF13437.6 EME68819.1 - 4.4e-05 24.1 0.7 0.12 13.0 0.1 2.8 2 0 0 2 2 2 2 HlyD family secretion protein ATP-grasp_3 PF02655.14 EME68819.1 - 8.6e-05 22.6 0.0 0.00014 22.0 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain HlyD_D23 PF16576.5 EME68819.1 - 0.0015 17.8 0.2 0.67 9.1 0.0 2.3 1 1 1 2 2 2 2 Barrel-sandwich domain of CusB or HlyD membrane-fusion RnfC_N PF13375.6 EME68819.1 - 0.0048 16.8 0.2 0.013 15.5 0.2 1.7 1 0 0 1 1 1 1 RnfC Barrel sandwich hybrid domain ATPgrasp_N PF18130.1 EME68819.1 - 0.0089 16.6 0.4 3 8.5 0.1 3.0 2 0 0 2 2 2 1 ATP-grasp N-terminal domain NQRA PF05896.11 EME68819.1 - 0.029 13.8 0.1 0.052 13.0 0.1 1.3 1 0 0 1 1 1 0 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) PTS_EIIA_1 PF00358.20 EME68819.1 - 0.03 14.1 0.1 0.5 10.1 0.0 2.6 1 1 1 2 2 2 0 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DUF2118 PF09891.9 EME68819.1 - 0.037 14.0 0.1 0.083 12.8 0.1 1.6 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2118) YqfD PF06898.11 EME68819.1 - 0.045 12.6 0.6 0.076 11.8 0.6 1.3 1 0 0 1 1 1 0 Putative stage IV sporulation protein YqfD GCV_H PF01597.19 EME68819.1 - 0.051 13.5 0.1 0.12 12.3 0.1 1.6 1 0 0 1 1 1 0 Glycine cleavage H-protein GARS_A PF01071.19 EME68819.1 - 0.089 12.6 0.1 0.18 11.6 0.0 1.6 2 0 0 2 2 2 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain HMGL-like PF00682.19 EME68820.1 - 3.5e-57 194.0 0.0 3.9e-57 193.8 0.0 1.0 1 0 0 1 1 1 1 HMGL-like RsdA_SigD_bd PF16751.5 EME68820.1 - 0.16 12.2 0.3 0.16 12.2 0.3 1.9 2 0 0 2 2 2 0 Anti-sigma-D factor RsdA to sigma factor binding region Hemerythrin PF01814.23 EME68821.1 - 0.02 15.5 6.3 1.4 9.5 3.8 2.0 1 1 1 2 2 2 0 Hemerythrin HHE cation binding domain Dfp1_Him1_M PF08630.10 EME68822.1 - 0.041 14.1 0.0 0.045 14.0 0.0 1.1 1 0 0 1 1 1 0 Dfp1/Him1, central region DUF760 PF05542.11 EME68822.1 - 0.14 12.5 0.0 0.16 12.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF760) OST-HTH PF12872.7 EME68823.1 - 0.029 14.2 0.0 0.16 11.8 0.0 2.0 1 1 0 1 1 1 0 OST-HTH/LOTUS domain EAL PF00563.20 EME68824.1 - 6.3e-17 61.9 0.1 7.2e-17 61.7 0.1 1.1 1 0 0 1 1 1 1 EAL domain ADH_zinc_N PF00107.26 EME68824.1 - 0.016 15.2 0.1 0.022 14.7 0.1 1.2 1 0 0 1 1 1 0 Zinc-binding dehydrogenase PAS_9 PF13426.7 EME68825.1 - 1.1e-12 48.1 0.0 1.3e-12 47.9 0.0 1.1 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 EME68825.1 - 2.2e-12 47.0 0.0 2.9e-12 46.6 0.0 1.1 1 0 0 1 1 1 1 PAS fold PAS_3 PF08447.12 EME68825.1 - 2.6e-06 27.6 0.1 3.8e-06 27.1 0.1 1.3 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.10 EME68825.1 - 7.2e-06 26.2 0.0 9.4e-06 25.9 0.0 1.2 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 EME68825.1 - 7.2e-06 25.9 0.0 1.2e-05 25.1 0.0 1.4 1 0 0 1 1 1 1 PAS domain MCPsignal PF00015.21 EME68826.1 - 1.3e-31 109.7 46.9 2.1e-29 102.6 26.3 4.2 2 1 2 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain TarH PF02203.15 EME68826.1 - 1.2e-24 87.2 1.0 1.2e-24 87.2 1.0 4.3 4 1 1 5 5 5 1 Tar ligand binding domain homologue 4HB_MCP_1 PF12729.7 EME68826.1 - 2.2e-21 76.2 1.7 3.9e-20 72.2 0.0 3.3 3 1 1 4 4 4 1 Four helix bundle sensory module for signal transduction PAS_3 PF08447.12 EME68826.1 - 2e-15 56.8 0.0 4.1e-15 55.8 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 EME68826.1 - 5.9e-13 49.0 0.0 1.5e-12 47.7 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 EME68826.1 - 3.5e-09 36.7 0.0 9.7e-09 35.2 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.10 EME68826.1 - 4.4e-07 30.1 0.1 9.9e-06 25.8 0.0 2.9 2 0 0 2 2 2 1 PAS fold PAS_8 PF13188.7 EME68826.1 - 0.0011 19.0 0.0 0.0036 17.3 0.0 1.9 1 0 0 1 1 1 1 PAS domain HAMP PF00672.25 EME68826.1 - 0.013 15.8 9.1 0.035 14.5 0.0 5.1 6 1 0 6 6 4 0 HAMP domain DUF948 PF06103.11 EME68826.1 - 0.027 14.7 19.7 3.6 7.9 3.3 5.0 2 2 2 4 4 4 0 Bacterial protein of unknown function (DUF948) IFT57 PF10498.9 EME68826.1 - 0.098 11.6 3.3 0.24 10.3 0.1 2.5 2 0 0 2 2 2 0 Intra-flagellar transport protein 57 DUF1664 PF07889.12 EME68826.1 - 0.32 11.0 18.0 0.26 11.3 1.8 4.4 3 2 1 4 4 4 0 Protein of unknown function (DUF1664) LXG PF04740.12 EME68826.1 - 0.47 10.1 8.1 3 7.5 1.1 2.5 1 1 1 2 2 2 0 LXG domain of WXG superfamily FlaC_arch PF05377.11 EME68826.1 - 0.54 10.7 5.3 23 5.5 0.1 3.7 3 0 0 3 3 3 0 Flagella accessory protein C (FlaC) Laminin_I PF06008.14 EME68826.1 - 0.63 9.7 19.6 0.36 10.5 5.2 3.1 1 1 2 4 4 4 0 Laminin Domain I DUF3450 PF11932.8 EME68826.1 - 1.7 7.9 18.7 0.049 12.9 4.6 3.7 2 1 2 4 4 4 0 Protein of unknown function (DUF3450) COG2 PF06148.11 EME68826.1 - 4.4 7.4 11.6 1.3 9.1 0.8 3.7 3 1 1 4 4 3 0 COG (conserved oligomeric Golgi) complex component, COG2 Hpt PF01627.23 EME68827.1 - 1.7e-06 28.2 0.1 2.1e-06 27.9 0.1 1.1 1 0 0 1 1 1 1 Hpt domain Trans_reg_C PF00486.28 EME68828.1 - 9e-23 80.2 0.0 1.8e-22 79.2 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal Response_reg PF00072.24 EME68828.1 - 7.4e-18 64.7 0.1 1.2e-17 64.0 0.1 1.4 1 0 0 1 1 1 1 Response regulator receiver domain Hpt PF01627.23 EME68829.1 - 2.4e-07 30.9 0.9 3.1e-07 30.6 0.9 1.2 1 0 0 1 1 1 1 Hpt domain Response_reg PF00072.24 EME68830.1 - 1.5e-27 96.0 0.0 1.7e-27 95.8 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain PAS PF00989.25 EME68831.1 - 1.1e-52 176.7 0.0 2.9e-15 56.2 0.0 5.3 5 1 0 5 5 5 4 PAS fold PAS_4 PF08448.10 EME68831.1 - 1.7e-46 157.0 0.5 2.4e-19 69.6 0.4 5.0 4 1 0 4 4 4 4 PAS fold PAS_9 PF13426.7 EME68831.1 - 1.3e-42 144.3 0.0 2.2e-13 50.3 0.0 4.5 4 0 0 4 4 4 4 PAS domain HATPase_c PF02518.26 EME68831.1 - 1.1e-25 90.3 0.0 2.9e-25 89.0 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 EME68831.1 - 3.9e-23 81.0 0.8 1.3e-07 31.4 0.0 5.0 4 0 0 4 4 4 4 PAS domain HisKA PF00512.25 EME68831.1 - 9.6e-16 57.6 0.0 9.6e-16 57.6 0.0 3.8 4 0 0 4 4 3 1 His Kinase A (phospho-acceptor) domain Response_reg PF00072.24 EME68831.1 - 4.3e-12 46.2 0.0 9.2e-12 45.1 0.0 1.5 1 0 0 1 1 1 1 Response regulator receiver domain PAS_3 PF08447.12 EME68831.1 - 9.8e-12 45.0 0.0 0.015 15.6 0.0 5.2 5 1 0 5 5 5 3 PAS fold dCache_1 PF02743.18 EME68831.1 - 2e-09 37.7 0.0 2.9e-08 33.8 0.0 2.3 2 0 0 2 2 2 1 Cache domain PAS_7 PF12860.7 EME68831.1 - 0.0021 18.2 0.0 3.7 7.7 0.0 4.1 4 1 0 4 4 4 1 PAS fold HATPase_c_2 PF13581.6 EME68831.1 - 0.014 15.4 0.0 0.039 13.9 0.0 1.8 1 1 0 1 1 1 0 Histidine kinase-like ATPase domain PAS_10 PF13596.6 EME68831.1 - 0.016 15.7 0.0 44 4.7 0.0 4.0 4 0 0 4 4 4 0 PAS domain PAS_12 PF18095.1 EME68831.1 - 0.097 12.3 0.0 0.65 9.6 0.0 2.3 3 0 0 3 3 3 0 UPF0242 C-terminal PAS-like domain Gly-zipper_Omp PF13488.6 EME68831.1 - 2.3 8.3 7.8 0.2 11.7 0.2 3.1 3 0 0 3 3 3 0 Glycine zipper DUF2135 PF09906.9 EME68832.1 - 0.048 14.0 0.0 0.061 13.6 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2135) YccF PF03733.13 EME68833.1 - 7.1e-15 55.5 29.0 2.7e-08 34.4 8.1 2.8 3 1 0 3 3 3 2 Inner membrane component domain FA_desaturase PF00487.24 EME68833.1 - 2.3 8.0 4.7 4.1 7.2 4.7 1.4 1 0 0 1 1 1 0 Fatty acid desaturase Rick_17kDa_Anti PF05433.15 EME68834.1 - 1.4e-05 24.8 26.8 3.1e-05 23.7 26.8 1.6 1 0 0 1 1 1 1 Glycine zipper 2TM domain Gly-zipper_Omp PF13488.6 EME68834.1 - 0.0079 16.2 23.3 0.061 13.3 23.3 2.3 1 1 0 1 1 1 1 Glycine zipper TraT PF05818.12 EME68834.1 - 0.045 13.4 3.9 0.081 12.6 3.9 1.4 1 0 0 1 1 1 0 Enterobacterial TraT complement resistance protein DUF5061 PF16587.5 EME68834.1 - 0.06 13.4 0.7 0.06 13.4 0.7 2.1 2 0 0 2 2 2 0 17 kDa common-antigen outer membrane protein Gly-zipper_OmpA PF13436.6 EME68834.1 - 0.27 11.0 22.1 0.72 9.7 22.1 1.7 1 0 0 1 1 1 0 Glycine-zipper domain Gly-zipper_YMGG PF13441.6 EME68834.1 - 0.93 9.3 25.9 3 7.7 26.0 1.9 1 1 0 1 1 1 0 YMGG-like Gly-zipper Sporozoite_P67 PF05642.11 EME68834.1 - 2 6.4 13.5 2.7 6.0 13.5 1.1 1 0 0 1 1 1 0 Sporozoite P67 surface antigen IMS PF00817.20 EME68835.1 - 1.3e-45 155.0 0.0 2.3e-45 154.3 0.0 1.4 1 0 0 1 1 1 1 impB/mucB/samB family IMS_C PF11799.8 EME68835.1 - 6.2e-22 78.5 0.1 2.9e-21 76.3 0.0 2.0 2 0 0 2 2 2 1 impB/mucB/samB family C-terminal domain IMS_HHH PF11798.8 EME68835.1 - 0.00025 21.2 0.0 0.00073 19.7 0.0 1.9 1 0 0 1 1 1 1 IMS family HHH motif DNA_pol_lambd_f PF10391.9 EME68835.1 - 0.0052 16.6 0.0 0.012 15.4 0.0 1.5 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda HHH_5 PF14520.6 EME68835.1 - 0.013 16.1 0.0 0.039 14.6 0.0 1.8 1 0 0 1 1 1 0 Helix-hairpin-helix domain Ins134_P3_kin PF05770.11 EME68835.1 - 0.24 10.9 0.0 0.41 10.1 0.0 1.3 1 0 0 1 1 1 0 Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain zf-ribbon_3 PF13248.6 EME68835.1 - 0.31 10.5 3.3 0.64 9.5 3.3 1.5 1 0 0 1 1 1 0 zinc-ribbon domain RecA PF00154.21 EME68836.1 - 1.9e-145 483.2 3.0 2.3e-145 482.9 3.0 1.1 1 0 0 1 1 1 1 recA bacterial DNA recombination protein Rad51 PF08423.11 EME68836.1 - 3.4e-12 46.2 0.5 1.1e-11 44.5 0.5 1.7 1 1 0 1 1 1 1 Rad51 ATPase PF06745.13 EME68836.1 - 1.5e-09 37.6 0.5 3.3e-08 33.2 0.5 2.6 1 1 0 1 1 1 1 KaiC ATPase_2 PF01637.18 EME68836.1 - 9.7e-06 25.7 0.0 1.9e-05 24.7 0.0 1.4 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_24 PF13479.6 EME68836.1 - 2.5e-05 24.1 0.0 4e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 EME68836.1 - 0.00019 21.9 0.1 0.00033 21.1 0.1 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 EME68836.1 - 0.00054 20.4 0.0 0.0011 19.4 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.6 EME68836.1 - 0.0018 17.9 0.3 0.018 14.6 0.3 2.3 1 1 0 1 1 1 1 AAA domain AAA_35 PF14516.6 EME68836.1 - 0.017 13.9 0.0 0.027 13.3 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain DnaB_C PF03796.15 EME68836.1 - 0.021 14.1 0.0 0.039 13.3 0.0 1.5 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain CobU PF02283.16 EME68836.1 - 0.022 14.3 0.0 0.055 13.0 0.0 1.6 1 1 0 1 1 1 0 Cobinamide kinase / cobinamide phosphate guanyltransferase ABC_tran PF00005.27 EME68836.1 - 0.025 15.1 0.0 0.051 14.1 0.0 1.8 1 1 0 1 1 1 0 ABC transporter MobB PF03205.14 EME68836.1 - 0.047 13.6 0.0 0.11 12.4 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.6 EME68836.1 - 0.077 13.3 0.0 0.17 12.1 0.0 1.5 1 1 0 1 1 1 0 AAA domain CLP1_P PF16575.5 EME68836.1 - 0.094 12.5 0.0 0.19 11.5 0.0 1.5 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_14 PF13173.6 EME68836.1 - 0.12 12.4 0.0 0.34 11.0 0.0 1.8 1 1 0 1 1 1 0 AAA domain Peptidase_C14 PF00656.22 EME68837.1 - 9.9e-14 51.9 0.0 1.4e-13 51.4 0.0 1.2 1 0 0 1 1 1 1 Caspase domain GCV_T_C PF08669.11 EME68837.1 - 0.13 12.2 0.5 0.3 11.1 0.5 1.6 1 0 0 1 1 1 0 Glycine cleavage T-protein C-terminal barrel domain Phage_integrase PF00589.22 EME68838.1 - 1.1e-07 31.8 0.0 2.9e-07 30.4 0.0 1.7 2 0 0 2 2 2 1 Phage integrase family Phage_int_SAM_3 PF14659.6 EME68838.1 - 0.00034 20.8 0.1 0.00066 19.9 0.1 1.5 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain FdhD-NarQ PF02634.15 EME68839.1 - 1.9e-21 76.8 0.0 2.3e-21 76.6 0.0 1.1 1 0 0 1 1 1 1 FdhD/NarQ family Molybdopterin PF00384.22 EME68840.1 - 2e-28 99.5 0.0 2e-27 96.2 0.0 2.4 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 EME68840.1 - 5.1e-11 42.6 0.0 6e-10 39.1 0.0 2.3 2 0 0 2 2 2 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 EME68840.1 - 0.023 14.7 0.9 0.046 13.7 0.9 1.5 1 0 0 1 1 1 0 Molybdopterin oxidoreductase Fe4S4 domain Peptidase_M48 PF01435.18 EME68841.1 - 3.1e-37 128.3 0.3 5.6e-37 127.4 0.0 1.5 2 0 0 2 2 2 1 Peptidase family M48 Peptidase_M56 PF05569.11 EME68841.1 - 0.0011 18.3 0.0 0.002 17.4 0.0 1.4 1 0 0 1 1 1 1 BlaR1 peptidase M56 PhoR PF11808.8 EME68841.1 - 0.2 12.1 3.9 0.17 12.3 0.6 2.4 2 0 0 2 2 2 0 Phosphate regulon sensor protein PhoR PAS_7 PF12860.7 EME68842.1 - 9.4e-113 370.7 0.0 3.5e-38 130.3 0.0 3.5 3 0 0 3 3 3 3 PAS fold GGDEF PF00990.21 EME68842.1 - 7.9e-51 172.0 0.1 1.2e-50 171.4 0.1 1.3 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain PAS_8 PF13188.7 EME68842.1 - 1.1e-17 63.6 2.3 1.2e-05 25.2 0.0 4.4 5 0 0 5 5 5 3 PAS domain PAS_4 PF08448.10 EME68842.1 - 4e-16 59.2 1.2 7.8e-06 26.1 0.0 4.4 3 2 0 3 3 3 3 PAS fold PAS_9 PF13426.7 EME68842.1 - 2.8e-08 34.0 0.0 0.23 11.8 0.0 3.5 3 0 0 3 3 3 3 PAS domain PAS PF00989.25 EME68842.1 - 3.4e-07 30.3 0.0 0.0062 16.5 0.0 3.2 3 0 0 3 3 3 2 PAS fold DUF87 PF01935.17 EME68843.1 - 1.3e-08 35.3 0.0 2e-08 34.6 0.0 1.2 1 0 0 1 1 1 1 Helicase HerA, central domain AAA_22 PF13401.6 EME68843.1 - 4.5e-07 30.2 0.0 8.9e-07 29.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 EME68843.1 - 7.1e-06 26.5 0.2 2.1e-05 25.0 0.2 1.8 1 0 0 1 1 1 1 AAA ATPase domain TrwB_AAD_bind PF10412.9 EME68843.1 - 0.0001 21.4 0.0 0.018 13.9 0.0 2.2 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain AAA_30 PF13604.6 EME68843.1 - 0.00093 19.0 0.4 0.0023 17.7 0.4 1.6 1 0 0 1 1 1 1 AAA domain FtsK_SpoIIIE PF01580.18 EME68843.1 - 0.0045 16.4 0.2 0.015 14.7 0.2 1.8 1 1 0 1 1 1 1 FtsK/SpoIIIE family AAA PF00004.29 EME68843.1 - 0.0061 17.0 0.0 0.057 13.8 0.0 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 EME68843.1 - 0.0065 16.4 0.0 0.013 15.5 0.0 1.4 1 0 0 1 1 1 1 NACHT domain AAA_33 PF13671.6 EME68843.1 - 0.015 15.4 0.3 0.094 12.9 0.2 2.5 2 1 0 2 2 1 0 AAA domain RsgA_GTPase PF03193.16 EME68843.1 - 0.024 14.5 0.0 0.058 13.3 0.0 1.6 1 0 0 1 1 1 0 RsgA GTPase ABC_tran PF00005.27 EME68843.1 - 0.048 14.2 0.0 0.092 13.3 0.0 1.4 1 1 0 1 1 1 0 ABC transporter Zot PF05707.12 EME68843.1 - 0.055 13.1 0.1 0.19 11.4 0.1 1.7 1 1 0 1 1 1 0 Zonular occludens toxin (Zot) DUF2075 PF09848.9 EME68843.1 - 0.072 12.3 0.0 0.12 11.6 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) ATPase_2 PF01637.18 EME68843.1 - 0.088 12.7 0.0 0.14 12.1 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea Viral_helicase1 PF01443.18 EME68843.1 - 0.12 12.1 0.0 0.23 11.1 0.0 1.5 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase cobW PF02492.19 EME68843.1 - 0.13 11.8 0.0 0.23 11.0 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain DUF815 PF05673.13 EME68843.1 - 0.16 11.1 0.1 0.39 9.9 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF815) DAP3 PF10236.9 EME68843.1 - 0.23 10.6 0.1 2 7.5 0.0 2.0 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 CitMHS PF03600.16 EME68844.1 - 8.3e-35 120.4 24.2 8.3e-35 120.4 24.2 1.8 1 1 1 2 2 2 2 Citrate transporter DUF1646 PF07854.12 EME68844.1 - 4.2 6.7 24.0 0.089 12.1 4.3 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF1646) EAL PF00563.20 EME68845.1 - 2.1e-05 24.2 0.0 3.2e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 EAL domain Response_reg PF00072.24 EME68846.1 - 1.5e-21 76.7 0.0 3.5e-21 75.5 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain HD_5 PF13487.6 EME68846.1 - 2.8e-17 62.7 0.0 1.9e-16 60.1 0.0 2.3 2 0 0 2 2 2 1 HD domain AbrB_C PF18277.1 EME68846.1 - 0.036 13.7 0.1 0.27 10.9 0.1 2.5 2 0 0 2 2 2 0 AbrB C-terminal domain HDOD PF08668.12 EME68847.1 - 1.2e-50 171.7 0.3 1.7e-50 171.2 0.3 1.2 1 0 0 1 1 1 1 HDOD domain Response_reg PF00072.24 EME68847.1 - 1.4e-17 63.9 0.0 3.5e-17 62.6 0.0 1.7 2 0 0 2 2 2 1 Response regulator receiver domain PAS_9 PF13426.7 EME68848.1 - 3.4e-32 110.8 0.0 3.1e-10 40.2 0.0 5.5 5 0 0 5 5 5 4 PAS domain PAS PF00989.25 EME68848.1 - 9.6e-30 102.9 0.0 3.8e-09 36.5 0.0 5.7 5 1 0 5 5 5 5 PAS fold PAS_4 PF08448.10 EME68848.1 - 4.2e-27 94.6 7.1 5.4e-07 29.8 0.0 6.8 6 2 0 6 6 6 5 PAS fold PAS_7 PF12860.7 EME68848.1 - 1.2e-25 89.9 0.0 9.2e-18 64.5 0.0 5.7 5 0 0 5 5 5 3 PAS fold PAS_8 PF13188.7 EME68848.1 - 2.6e-21 75.2 1.6 0.0025 17.8 0.0 5.8 5 0 0 5 5 5 5 PAS domain HATPase_c PF02518.26 EME68848.1 - 1.5e-19 70.5 0.2 5.3e-19 68.8 0.1 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 EME68848.1 - 0.011 15.7 0.0 0.011 15.7 0.0 3.7 5 0 0 5 5 5 0 His Kinase A (phospho-acceptor) domain SpoVT_C PF15714.5 EME68848.1 - 0.061 13.4 0.0 7 6.7 0.0 2.8 2 0 0 2 2 2 0 Stage V sporulation protein T C-terminal, transcription factor PAS_7 PF12860.7 EME68849.1 - 2.7e-41 140.3 0.0 6.7e-37 126.2 0.0 2.8 3 0 0 3 3 3 2 PAS fold HATPase_c PF02518.26 EME68849.1 - 2.4e-22 79.5 0.0 4.5e-22 78.7 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 EME68849.1 - 5.5e-10 39.5 1.0 0.00028 21.1 0.0 3.1 2 1 0 2 2 2 2 PAS fold PAS_9 PF13426.7 EME68849.1 - 4.6e-09 36.5 0.0 3.2e-08 33.8 0.0 2.3 3 0 0 3 3 3 1 PAS domain PAS_8 PF13188.7 EME68849.1 - 1e-06 28.6 0.2 0.037 14.1 0.0 2.7 2 0 0 2 2 2 2 PAS domain PAS PF00989.25 EME68849.1 - 2.1e-05 24.5 0.0 0.031 14.3 0.0 2.8 2 1 0 2 2 2 2 PAS fold HisKA PF00512.25 EME68849.1 - 0.0053 16.8 0.4 0.034 14.2 0.0 2.5 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.6 EME68849.1 - 0.065 13.1 0.0 0.17 11.7 0.0 1.6 2 0 0 2 2 2 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 EME68850.1 - 9.2e-52 174.0 3.0 1.2e-28 99.6 0.8 3.3 3 0 0 3 3 3 2 Response regulator receiver domain PAS_3 PF08447.12 EME68850.1 - 3.9e-32 110.4 0.4 4e-13 49.5 0.0 4.5 4 0 0 4 4 4 3 PAS fold HATPase_c PF02518.26 EME68850.1 - 1.4e-28 99.7 0.2 2.8e-28 98.6 0.2 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 EME68850.1 - 1.8e-21 75.9 0.8 2.2e-20 72.5 0.0 3.3 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.7 EME68850.1 - 5.7e-18 65.1 0.0 3.7e-10 40.0 0.0 4.4 3 1 1 4 4 4 3 PAS domain PAS_4 PF08448.10 EME68850.1 - 2.9e-14 53.3 4.5 2.5e-05 24.5 0.1 4.2 3 0 0 3 3 3 3 PAS fold dCache_1 PF02743.18 EME68850.1 - 1.1e-13 51.6 0.0 2.5e-13 50.4 0.0 1.6 1 0 0 1 1 1 1 Cache domain PAS PF00989.25 EME68850.1 - 9.2e-13 48.2 0.0 6.8e-05 22.8 0.0 3.9 3 1 0 3 3 3 2 PAS fold Hpt PF01627.23 EME68850.1 - 1.3e-09 38.2 3.4 1.3e-09 38.2 3.4 3.1 2 0 0 2 2 2 1 Hpt domain PAS_8 PF13188.7 EME68850.1 - 1e-07 31.8 0.2 0.0095 15.9 0.0 4.2 3 1 0 3 3 3 2 PAS domain PAS_7 PF12860.7 EME68850.1 - 0.00053 20.1 0.0 2 8.6 0.0 3.0 2 0 0 2 2 2 2 PAS fold HAMP PF00672.25 EME68850.1 - 0.0019 18.5 2.9 0.0019 18.5 2.9 2.5 2 0 0 2 2 2 1 HAMP domain Cons_hypoth95 PF03602.15 EME68850.1 - 0.14 11.8 0.0 9.1 5.9 0.0 2.4 2 0 0 2 2 2 0 Conserved hypothetical protein 95 Response_reg PF00072.24 EME68851.1 - 2.3e-27 95.4 0.1 9.6e-27 93.4 0.1 2.0 2 0 0 2 2 2 1 Response regulator receiver domain HD PF01966.22 EME68851.1 - 3.5e-17 62.8 0.2 1e-16 61.3 0.0 1.8 2 0 0 2 2 2 1 HD domain HD_5 PF13487.6 EME68851.1 - 5.5e-17 61.8 0.1 2.5e-16 59.7 0.0 2.2 2 0 0 2 2 2 1 HD domain Response_reg PF00072.24 EME68852.1 - 6.9e-22 77.7 0.0 1.2e-21 77.0 0.0 1.4 1 0 0 1 1 1 1 Response regulator receiver domain HD_5 PF13487.6 EME68852.1 - 3.8e-19 68.7 0.1 1.3e-18 67.0 0.1 1.9 1 0 0 1 1 1 1 HD domain HD PF01966.22 EME68852.1 - 5.3e-16 59.0 0.1 1.1e-15 57.9 0.1 1.6 1 0 0 1 1 1 1 HD domain DUF599 PF04654.12 EME68853.1 - 4.7e-59 199.3 9.9 5.4e-59 199.1 9.9 1.0 1 0 0 1 1 1 1 Protein of unknown function, DUF599 Methyltransf_11 PF08241.12 EME68854.1 - 3.8e-06 27.5 0.0 1.2e-05 25.8 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 EME68854.1 - 0.022 14.6 0.0 0.033 14.0 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase domain Ubie_methyltran PF01209.18 EME68854.1 - 0.061 12.6 0.0 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.6 EME68854.1 - 0.092 13.5 0.0 0.22 12.2 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase domain tRNA_Me_trans PF03054.16 EME68855.1 - 1.8e-108 362.5 0.0 2e-108 362.3 0.0 1.0 1 0 0 1 1 1 1 tRNA methyl transferase Asn_synthase PF00733.21 EME68855.1 - 1.6e-06 28.0 0.0 2.1e-06 27.7 0.0 1.1 1 0 0 1 1 1 1 Asparagine synthase NAD_synthase PF02540.17 EME68855.1 - 0.0002 20.5 0.0 0.00042 19.5 0.0 1.4 1 1 0 1 1 1 1 NAD synthase QueC PF06508.13 EME68855.1 - 0.0046 16.5 0.2 0.01 15.4 0.2 1.5 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC Arginosuc_synth PF00764.19 EME68855.1 - 0.018 14.3 0.3 0.12 11.6 0.3 2.0 1 1 0 1 1 1 0 Arginosuccinate synthase ThiI PF02568.14 EME68855.1 - 0.19 11.3 0.1 0.37 10.3 0.1 1.4 2 0 0 2 2 2 0 Thiamine biosynthesis protein (ThiI) Phage_AlpA PF05930.12 EME68856.1 - 9.6e-11 41.3 0.0 1.3e-10 40.9 0.0 1.2 1 0 0 1 1 1 1 Prophage CP4-57 regulatory protein (AlpA) PhdYeFM_antitox PF02604.19 EME68857.1 - 3.7e-12 45.9 0.1 9.6e-12 44.5 0.0 1.7 1 1 1 2 2 2 1 Antitoxin Phd_YefM, type II toxin-antitoxin system ParE_toxin PF05016.15 EME68858.1 - 2e-10 41.1 0.3 2.2e-10 41.0 0.3 1.0 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE Rep_3 PF01051.21 EME68859.1 - 1.7e-06 28.0 0.1 2.7e-06 27.4 0.1 1.3 1 0 0 1 1 1 1 Initiator Replication protein TetR_C_6 PF13977.6 EME68859.1 - 0.027 14.7 9.5 0.03 14.5 1.0 3.0 2 1 1 3 3 3 0 BetI-type transcriptional repressor, C-terminal PVL_ORF50 PF07768.11 EME68859.1 - 1.1 9.6 5.0 3.2 8.1 0.2 2.4 2 1 1 3 3 3 0 PVL ORF-50-like family Rep_3 PF01051.21 EME68860.1 - 3.3e-17 63.0 0.0 3.5e-17 63.0 0.0 1.0 1 0 0 1 1 1 1 Initiator Replication protein Cadherin_5 PF17892.1 EME68861.1 - 3.1e-72 238.7 102.7 1.4e-34 118.0 6.3 11.5 8 2 2 11 11 11 5 Cadherin-like domain Big_9 PF17963.1 EME68861.1 - 1.9e-58 195.2 91.1 2.1e-18 66.8 13.1 14.3 11 2 3 14 14 14 6 Bacterial Ig domain Cadherin_4 PF17803.1 EME68861.1 - 1.2e-30 105.9 73.6 1.6e-14 54.2 11.9 16.1 14 4 1 15 15 15 7 Bacterial cadherin-like domain AFP_2 PF18815.1 EME68861.1 - 1.7e-24 85.8 2.3 1.7e-24 85.8 2.3 8.7 9 2 1 10 10 10 1 Bacterial antifreeze protein repeat HemolysinCabind PF00353.19 EME68861.1 - 1.7e-06 27.9 13.3 1.7e-06 27.9 13.3 14.5 13 2 2 15 15 15 3 RTX calcium-binding nonapeptide repeat (4 copies) DUF4114 PF13448.6 EME68861.1 - 2e-06 28.5 3.0 2e-06 28.5 3.0 3.2 2 0 0 2 2 2 1 Domain of unknown function (DUF4114) Pkinase PF00069.25 EME68862.1 - 5.9e-30 104.5 0.0 1.4e-28 100.0 0.0 2.0 1 1 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 EME68862.1 - 6.1e-19 68.3 0.0 4.8e-17 62.1 0.0 2.1 1 1 0 1 1 1 1 Protein tyrosine kinase APH PF01636.23 EME68862.1 - 0.0044 17.0 1.0 0.042 13.8 0.0 2.3 2 1 1 3 3 3 1 Phosphotransferase enzyme family Kinase-like PF14531.6 EME68862.1 - 0.071 12.4 0.0 0.11 11.8 0.0 1.3 1 0 0 1 1 1 0 Kinase-like Kdo PF06293.14 EME68862.1 - 0.2 11.0 0.0 0.29 10.5 0.0 1.2 1 0 0 1 1 1 0 Lipopolysaccharide kinase (Kdo/WaaP) family ACP_syn_III PF08545.10 EME68863.1 - 0.073 12.9 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Nuc_deoxyrib_tr PF05014.15 EME68864.1 - 4.5e-43 146.4 0.0 5.9e-43 146.0 0.0 1.1 1 0 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase Nuc_deoxyri_tr2 PF15891.5 EME68864.1 - 0.012 15.9 0.0 0.019 15.2 0.0 1.5 1 1 0 1 1 1 0 Nucleoside 2-deoxyribosyltransferase like HATPase_c PF02518.26 EME68865.1 - 8.6e-26 90.6 0.0 2.4e-25 89.2 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 EME68865.1 - 5.5e-13 49.1 0.2 2e-12 47.3 0.2 1.9 1 0 0 1 1 1 1 PAS fold HisKA PF00512.25 EME68865.1 - 3.8e-12 46.1 0.8 9.4e-12 44.8 0.1 2.1 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.6 EME68865.1 - 0.00056 19.9 0.0 0.0015 18.5 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.6 EME68865.1 - 0.02 14.8 0.0 0.034 14.1 0.0 1.3 1 0 0 1 1 1 0 GHKL domain PAS_7 PF12860.7 EME68865.1 - 0.027 14.6 0.2 0.16 12.2 0.1 2.3 2 1 0 2 2 2 0 PAS fold DUF4864 PF16156.5 EME68865.1 - 0.034 14.8 0.1 0.11 13.2 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4864) PAS_3 PF08447.12 EME68865.1 - 0.06 13.6 0.0 0.52 10.6 0.0 2.3 2 0 0 2 2 2 0 PAS fold PAS PF00989.25 EME68865.1 - 0.11 12.5 0.1 1 9.4 0.0 2.3 2 1 0 2 2 2 0 PAS fold DUF2061 PF09834.9 EME68865.1 - 0.26 11.8 1.6 0.72 10.4 1.6 1.7 1 0 0 1 1 1 0 Predicted membrane protein (DUF2061) DUF3365 PF11845.8 EME68866.1 - 3e-23 82.9 0.0 1.3e-22 80.8 0.0 2.1 3 0 0 3 3 3 1 Protein of unknown function (DUF3365) HATPase_c PF02518.26 EME68866.1 - 6.1e-21 75.0 0.0 1.3e-20 74.0 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.12 EME68866.1 - 2.2e-19 69.5 0.1 1.5e-15 57.3 0.0 2.5 2 0 0 2 2 2 2 PAS fold PAS PF00989.25 EME68866.1 - 1.5e-17 63.6 0.0 5.9e-12 45.6 0.1 2.5 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.10 EME68866.1 - 4.4e-15 55.9 0.7 2.9e-09 37.2 0.1 3.1 3 0 0 3 3 3 2 PAS fold PAS_8 PF13188.7 EME68866.1 - 2.1e-14 53.2 0.3 8.7e-08 32.0 0.0 3.6 3 0 0 3 3 3 2 PAS domain PAS_9 PF13426.7 EME68866.1 - 3e-12 46.7 0.0 3.8e-06 27.1 0.0 2.5 2 0 0 2 2 2 2 PAS domain HisKA PF00512.25 EME68866.1 - 1e-09 38.2 0.1 1e-09 38.2 0.1 2.8 4 0 0 4 4 4 1 His Kinase A (phospho-acceptor) domain PAS_7 PF12860.7 EME68866.1 - 0.027 14.6 0.2 0.2 11.9 0.1 2.5 2 1 0 2 2 2 0 PAS fold HATPase_c_5 PF14501.6 EME68866.1 - 0.03 14.2 0.0 0.071 13.0 0.0 1.6 1 0 0 1 1 1 0 GHKL domain RF-1 PF00472.20 EME68867.1 - 2.3e-27 95.2 0.7 2.9e-27 94.9 0.7 1.1 1 0 0 1 1 1 1 RF-1 domain MRP-S28 PF10213.9 EME68867.1 - 0.034 14.6 0.0 0.039 14.4 0.0 1.2 1 0 0 1 1 1 0 Mitochondrial ribosomal subunit protein Nucleo_P87 PF07267.11 EME68867.1 - 0.045 12.6 0.0 0.05 12.5 0.0 1.1 1 0 0 1 1 1 0 Nucleopolyhedrovirus capsid protein P87 TonB_2 PF13103.6 EME68867.1 - 0.14 12.4 0.3 6.6 7.1 0.0 2.2 1 1 0 2 2 2 0 TonB C terminal DUF1476 PF07345.11 EME68868.1 - 1.7e-08 34.8 0.1 2e-08 34.5 0.1 1.1 1 0 0 1 1 1 1 ATPase inhibitor subunit zeta SBP_bac_11 PF13531.6 EME68869.1 - 2e-45 155.3 0.8 2.4e-45 155.1 0.8 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 EME68869.1 - 3e-13 50.4 3.7 3.8e-13 50.1 3.7 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 EME68869.1 - 3.2e-06 26.7 0.1 6.3e-06 25.8 0.1 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.7 EME68869.1 - 0.0041 16.3 0.0 0.013 14.6 0.0 1.7 2 0 0 2 2 2 1 PBP superfamily domain BPD_transp_1 PF00528.22 EME68870.1 - 2.8e-22 79.4 14.2 2.8e-22 79.4 14.2 2.1 1 1 1 2 2 2 2 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 EME68871.1 - 5.7e-10 39.2 11.1 5.7e-10 39.2 11.1 2.1 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Keratin_assoc PF09775.9 EME68871.1 - 0.059 13.0 0.2 0.16 11.6 0.2 1.7 1 0 0 1 1 1 0 Keratinocyte-associated protein 2 ABC_tran PF00005.27 EME68872.1 - 9.9e-36 123.3 0.0 1.5e-35 122.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 EME68872.1 - 6.1e-09 36.1 0.6 0.00029 20.7 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 EME68872.1 - 1.8e-07 30.8 0.0 2.1e-06 27.3 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain TOBE_3 PF12857.7 EME68872.1 - 4.6e-07 29.7 2.0 1.5e-06 28.0 2.0 1.9 1 0 0 1 1 1 1 TOBE-like domain CysA_C_terminal PF17850.1 EME68872.1 - 1.2e-05 25.7 7.1 2.5e-05 24.8 1.8 3.3 3 0 0 3 3 2 1 CysA C-terminal regulatory domain TOBE PF03459.17 EME68872.1 - 6.5e-05 23.1 3.4 8e-05 22.9 1.4 2.2 2 0 0 2 2 2 1 TOBE domain AAA_16 PF13191.6 EME68872.1 - 0.00026 21.4 0.6 0.00051 20.5 0.5 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 EME68872.1 - 0.00054 20.2 0.3 0.0037 17.5 0.3 2.0 1 1 0 1 1 1 1 AAA domain TOBE_2 PF08402.10 EME68872.1 - 0.00076 19.6 4.8 0.0018 18.4 0.7 3.1 3 0 0 3 3 3 1 TOBE domain AAA_29 PF13555.6 EME68872.1 - 0.0025 17.5 0.0 0.0046 16.7 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 EME68872.1 - 0.0025 17.7 0.0 0.004 17.1 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase SbcCD_C PF13558.6 EME68872.1 - 0.0063 16.7 0.1 0.044 14.0 0.1 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit DLIC PF05783.11 EME68872.1 - 0.011 14.6 0.1 0.016 14.1 0.1 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) NACHT PF05729.12 EME68872.1 - 0.011 15.6 0.1 0.046 13.6 0.0 1.9 2 0 0 2 2 2 0 NACHT domain AAA_23 PF13476.6 EME68872.1 - 0.016 15.7 0.0 0.026 15.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 EME68872.1 - 0.016 14.9 0.1 0.05 13.3 0.1 1.8 1 0 0 1 1 1 0 AAA domain ABC_ATPase PF09818.9 EME68872.1 - 0.017 14.0 0.1 1.4 7.6 0.0 2.8 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA_18 PF13238.6 EME68872.1 - 0.022 15.3 0.0 0.042 14.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 EME68872.1 - 0.025 14.8 0.2 0.057 13.6 0.2 1.9 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 EME68872.1 - 0.029 14.6 0.0 0.068 13.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 EME68872.1 - 0.04 13.6 0.1 0.54 10.0 0.0 2.3 3 0 0 3 3 2 0 AAA domain Rad17 PF03215.15 EME68872.1 - 0.042 13.8 0.0 0.07 13.0 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA PF00004.29 EME68872.1 - 0.043 14.3 0.0 0.22 11.9 0.0 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) PhoH PF02562.16 EME68872.1 - 0.051 13.0 0.0 1.7 8.1 0.0 2.3 2 0 0 2 2 2 0 PhoH-like protein AAA_25 PF13481.6 EME68872.1 - 0.058 13.0 0.6 0.3 10.6 0.1 2.1 2 0 0 2 2 2 0 AAA domain TsaE PF02367.17 EME68872.1 - 0.069 13.2 0.0 0.13 12.3 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ATPase PF06745.13 EME68872.1 - 0.1 11.9 0.1 14 4.9 0.0 2.1 2 0 0 2 2 2 0 KaiC NTPase_1 PF03266.15 EME68872.1 - 0.12 12.3 0.2 0.46 10.4 0.1 2.0 2 0 0 2 2 2 0 NTPase cobW PF02492.19 EME68872.1 - 0.13 11.8 0.0 0.24 11.0 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_5 PF07728.14 EME68872.1 - 0.15 12.1 0.1 0.46 10.5 0.1 1.8 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) DEAD PF00270.29 EME68872.1 - 0.15 11.8 0.0 0.28 10.9 0.0 1.4 1 1 0 1 1 1 0 DEAD/DEAH box helicase Cytochrome_CBB3 PF13442.6 EME68873.1 - 2.3e-06 27.8 0.0 3e-06 27.5 0.0 1.2 1 0 0 1 1 1 1 Cytochrome C oxidase, cbb3-type, subunit III Cytochrom_C PF00034.21 EME68873.1 - 4.8e-05 24.4 1.4 0.0011 20.0 1.4 2.1 1 1 0 1 1 1 1 Cytochrome c FCSD-flav_bind PF09242.11 EME68874.1 - 1.2e-29 102.4 0.1 5.2e-29 100.4 0.0 2.2 2 0 0 2 2 2 1 Flavocytochrome c sulphide dehydrogenase, flavin-binding Pyr_redox_2 PF07992.14 EME68874.1 - 9e-16 57.9 0.2 9.6e-12 44.7 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 EME68874.1 - 1.6e-05 24.7 0.3 0.00081 19.1 0.0 2.7 2 1 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox PF00070.27 EME68874.1 - 3.7e-05 24.2 0.1 0.00011 22.7 0.0 1.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 EME68874.1 - 8.3e-05 22.6 0.0 0.21 11.5 0.0 2.4 2 0 0 2 2 2 2 FAD-NAD(P)-binding NAD_binding_8 PF13450.6 EME68874.1 - 0.00011 22.3 4.8 0.00013 22.1 0.0 3.2 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 EME68874.1 - 0.0024 17.0 0.0 0.019 14.1 0.0 2.1 1 1 1 2 2 2 1 Glucose inhibited division protein A Trp_halogenase PF04820.14 EME68874.1 - 0.0032 16.4 0.0 0.0048 15.8 0.0 1.2 1 0 0 1 1 1 1 Tryptophan halogenase Thi4 PF01946.17 EME68874.1 - 0.0045 16.3 0.0 0.009 15.3 0.0 1.4 1 0 0 1 1 1 1 Thi4 family Mqo PF06039.15 EME68874.1 - 0.014 14.0 0.0 0.024 13.2 0.0 1.3 1 0 0 1 1 1 0 Malate:quinone oxidoreductase (Mqo) Lycopene_cycl PF05834.12 EME68874.1 - 0.043 12.9 0.6 1.3 8.0 0.0 2.7 3 0 0 3 3 3 0 Lycopene cyclase protein K_oxygenase PF13434.6 EME68874.1 - 0.071 12.2 0.0 0.16 11.1 0.0 1.5 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) PaaX_C PF08223.11 EME68875.1 - 1.5e-35 121.4 0.0 2.5e-35 120.7 0.0 1.3 1 0 0 1 1 1 1 PaaX-like protein C-terminal domain PaaX PF07848.12 EME68875.1 - 2.4e-26 91.8 0.2 5.1e-26 90.7 0.2 1.6 1 0 0 1 1 1 1 PaaX-like protein Metal_resist PF13801.6 EME68875.1 - 0.013 15.7 1.0 0.064 13.5 0.6 2.3 3 0 0 3 3 3 0 Heavy-metal resistance PadR PF03551.14 EME68875.1 - 0.045 13.7 0.0 0.11 12.4 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family Polysacc_deac_2 PF04748.13 EME68876.1 - 1.5e-80 269.4 0.0 1.8e-80 269.1 0.0 1.1 1 0 0 1 1 1 1 Divergent polysaccharide deacetylase HMA PF00403.26 EME68877.1 - 7.7e-11 42.3 0.1 9e-11 42.1 0.1 1.1 1 0 0 1 1 1 1 Heavy-metal-associated domain AphA_like PF14557.6 EME68878.1 - 2.5e-66 222.7 0.6 2.8e-66 222.5 0.6 1.0 1 0 0 1 1 1 1 Putative AphA-like transcriptional regulator NMT1_3 PF16868.5 EME68878.1 - 0.15 11.4 0.0 0.21 11.0 0.0 1.1 1 0 0 1 1 1 0 NMT1-like family Chorismate_bind PF00425.18 EME68879.1 - 5.4e-96 321.1 0.0 1.1e-95 320.1 0.0 1.5 2 0 0 2 2 2 1 chorismate binding enzyme Anth_synt_I_N PF04715.13 EME68879.1 - 1.1e-31 109.9 0.0 1.4e-29 103.2 0.0 3.1 2 1 0 2 2 2 1 Anthranilate synthase component I, N terminal region SurA_N_3 PF13624.6 EME68880.1 - 2.6e-41 141.1 2.4 4.7e-40 137.0 0.0 2.9 3 0 0 3 3 3 1 SurA N-terminal domain Rotamase_2 PF13145.6 EME68880.1 - 3.2e-33 115.1 14.2 1.1e-22 81.1 0.3 4.3 3 1 1 4 4 4 4 PPIC-type PPIASE domain SurA_N_2 PF13623.6 EME68880.1 - 1.3e-20 73.7 0.1 6.4e-20 71.5 0.0 2.2 3 0 0 3 3 3 1 SurA N-terminal domain Rotamase PF00639.21 EME68880.1 - 9.3e-08 32.9 9.0 1.2e-06 29.4 0.0 3.1 3 0 0 3 3 3 2 PPIC-type PPIASE domain Rotamase_3 PF13616.6 EME68880.1 - 9.8e-06 26.1 6.2 0.00015 22.3 0.0 2.9 3 0 0 3 3 3 2 PPIC-type PPIASE domain DUF3071 PF11268.8 EME68880.1 - 0.11 12.5 1.6 0.3 11.1 0.5 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF3071) DapB_C PF05173.14 EME68880.1 - 0.13 12.3 0.0 0.27 11.3 0.0 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, C-terminus Arm-DNA-bind_3 PF13356.6 EME68880.1 - 0.14 12.5 3.3 1.1 9.6 0.2 3.2 3 0 0 3 3 3 0 Arm DNA-binding domain TEX13 PF15186.6 EME68880.1 - 0.37 10.5 2.7 0.18 11.5 0.3 1.6 2 0 0 2 2 2 0 Testis-expressed sequence 13 protein family DrsE PF02635.15 EME68881.1 - 0.00021 21.6 0.0 0.00026 21.4 0.0 1.1 1 0 0 1 1 1 1 DsrE/DsrF-like family DrsE_2 PF13686.6 EME68881.1 - 0.00045 20.2 0.1 0.42 10.5 0.0 2.0 1 1 1 2 2 2 2 DsrE/DsrF/DrsH-like family TusA PF01206.17 EME68882.1 - 1.1e-20 73.2 0.0 1.2e-20 73.1 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA Pyr_redox_2 PF07992.14 EME68883.1 - 3.3e-17 62.7 0.0 1.9e-16 60.2 0.0 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 EME68883.1 - 0.0012 18.8 0.7 0.97 9.4 0.0 2.5 3 0 0 3 3 3 2 FAD-NAD(P)-binding GIDA PF01134.22 EME68883.1 - 0.1 11.7 0.5 3.4 6.7 0.0 2.1 2 0 0 2 2 2 0 Glucose inhibited division protein A DUF1641 PF07849.11 EME68884.1 - 8.4e-07 28.8 0.7 0.00025 20.9 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF1641) Alpha-E PF04168.12 EME68884.1 - 0.053 13.3 0.1 0.07 12.9 0.1 1.3 1 0 0 1 1 1 0 A predicted alpha-helical domain with a conserved ER motif. Phage_mat-A PF03863.13 EME68884.1 - 0.11 11.4 0.0 0.16 10.8 0.0 1.1 1 0 0 1 1 1 0 Phage maturation protein TIM PF00121.18 EME68885.1 - 7.5e-85 284.2 0.0 8.5e-85 284.0 0.0 1.0 1 0 0 1 1 1 1 Triosephosphate isomerase SecG PF03840.14 EME68886.1 - 2.4e-17 62.8 9.8 3e-17 62.4 9.8 1.1 1 0 0 1 1 1 1 Preprotein translocase SecG subunit CTP_synth_N PF06418.14 EME68887.1 - 2.7e-121 403.9 0.0 3.5e-121 403.6 0.0 1.1 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.28 EME68887.1 - 6e-55 186.0 0.0 8.7e-55 185.4 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 EME68887.1 - 2.9e-08 33.7 0.0 0.0004 20.2 0.0 2.9 2 1 1 3 3 3 2 Peptidase C26 CbiA PF01656.23 EME68887.1 - 0.038 14.1 0.0 0.056 13.5 0.0 1.4 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain DAHP_synth_1 PF00793.20 EME68888.1 - 5.4e-70 235.4 0.0 6.4e-70 235.2 0.0 1.0 1 0 0 1 1 1 1 DAHP synthetase I family Enolase_C PF00113.22 EME68889.1 - 6.7e-131 435.9 0.4 8.2e-131 435.6 0.4 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.16 EME68889.1 - 1.9e-59 199.5 0.1 3.9e-59 198.5 0.1 1.6 1 0 0 1 1 1 1 Enolase, N-terminal domain MR_MLE_C PF13378.6 EME68889.1 - 8.7e-07 28.7 0.0 1.5e-06 28.0 0.0 1.4 1 0 0 1 1 1 1 Enolase C-terminal domain-like MAAL_C PF07476.11 EME68889.1 - 6.1e-05 22.3 1.0 0.00013 21.2 0.1 1.8 2 0 0 2 2 2 1 Methylaspartate ammonia-lyase C-terminus NrfD PF03916.14 EME68890.1 - 2.9e-07 30.4 11.0 5.1e-07 29.6 11.0 1.6 1 1 0 1 1 1 1 Polysulphide reductase, NrfD B12D PF06522.11 EME68890.1 - 0.47 10.3 4.1 2.7 7.9 0.2 3.0 2 1 0 2 2 2 0 NADH-ubiquinone reductase complex 1 MLRQ subunit Fer4_11 PF13247.6 EME68891.1 - 4.9e-16 58.7 16.5 2.6e-12 46.7 3.8 3.6 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 EME68891.1 - 1.6e-14 54.2 21.7 3e-06 27.7 10.3 3.2 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 EME68891.1 - 9.5e-11 41.6 24.9 6.7e-07 29.3 2.8 3.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.27 EME68891.1 - 1.7e-08 34.0 3.3 1.7e-08 34.0 3.3 5.2 6 0 0 6 6 6 2 4Fe-4S binding domain Fer4_9 PF13187.6 EME68891.1 - 5.2e-08 32.9 25.7 0.00013 22.1 10.1 3.3 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_6 PF12837.7 EME68891.1 - 7e-08 32.2 32.3 3.1e-07 30.2 2.5 4.7 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_17 PF13534.6 EME68891.1 - 4.2e-07 30.4 17.6 0.00014 22.4 1.4 3.8 4 0 0 4 4 4 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 EME68891.1 - 1.6e-06 27.8 32.9 0.00021 21.2 1.5 4.6 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_8 PF13183.6 EME68891.1 - 1.4e-05 25.5 20.2 0.0016 18.8 1.0 3.3 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 EME68891.1 - 2.2e-05 24.6 33.4 0.0035 17.7 1.9 4.7 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_3 PF12798.7 EME68891.1 - 3.7e-05 24.4 34.3 0.28 12.2 5.9 4.5 4 1 0 4 4 4 4 4Fe-4S binding domain Fer4_16 PF13484.6 EME68891.1 - 0.00057 20.8 23.0 0.28 12.1 3.9 4.4 4 1 0 4 4 4 2 4Fe-4S double cluster binding domain Fer4_15 PF13459.6 EME68891.1 - 0.0078 16.9 2.4 0.0078 16.9 2.4 3.1 3 1 0 3 3 3 2 4Fe-4S single cluster domain Fer4_21 PF14697.6 EME68891.1 - 0.017 15.3 4.8 0.017 15.3 4.8 3.7 2 1 2 4 4 3 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 EME68891.1 - 0.79 10.6 18.2 0.25 12.2 1.0 3.3 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 EME68891.1 - 1.5 9.4 18.7 0.32 11.5 0.7 3.5 3 0 0 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I FdhD-NarQ PF02634.15 EME68892.1 - 1.3e-24 87.2 2.5 1.4e-24 87.1 2.5 1.0 1 0 0 1 1 1 1 FdhD/NarQ family DUF4159 PF13709.6 EME68894.1 - 7.7e-46 156.1 0.0 1.2e-45 155.5 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4159) BatA PF07584.11 EME68894.1 - 7.8e-15 55.0 17.2 7.8e-15 55.0 17.2 2.7 2 0 0 2 2 2 1 Aerotolerance regulator N-terminal GATase1_like PF07090.11 EME68895.1 - 0.0053 16.2 0.0 0.0091 15.5 0.0 1.3 1 0 0 1 1 1 1 Putative glutamine amidotransferase DUF4131 PF13567.6 EME68895.1 - 0.0065 16.1 0.8 0.0065 16.1 0.8 2.5 2 1 0 2 2 2 1 Domain of unknown function (DUF4131) Peptidase_M23 PF01551.22 EME68896.1 - 2.3e-32 111.0 0.4 4.3e-32 110.2 0.4 1.4 1 0 0 1 1 1 1 Peptidase family M23 Surfac_D-trimer PF09006.11 EME68896.1 - 0.047 13.6 0.3 0.099 12.5 0.3 1.5 1 0 0 1 1 1 0 Lung surfactant protein D coiled-coil trimerisation DUF1664 PF07889.12 EME68896.1 - 0.064 13.3 0.5 1 9.4 0.4 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) CLZ PF16526.5 EME68896.1 - 0.066 13.6 0.8 0.45 10.9 0.1 2.3 2 0 0 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels DUF3220 PF11516.8 EME68896.1 - 0.092 13.0 0.1 0.2 11.9 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3120) DUF3510 PF12022.8 EME68896.1 - 0.11 12.9 0.2 0.22 11.9 0.2 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3510) DUF5089 PF17002.5 EME68896.1 - 0.17 11.8 0.3 0.25 11.2 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5089) Bactofilin PF04519.13 EME68897.1 - 1.2e-24 86.4 7.6 1.5e-24 86.1 7.6 1.1 1 0 0 1 1 1 1 Polymer-forming cytoskeletal Phage_spike PF18715.1 EME68897.1 - 0.00016 21.6 3.1 0.066 13.3 0.0 3.2 1 1 1 2 2 2 2 Phage spike trimer CorA PF01544.18 EME68898.1 - 3.1e-52 177.7 0.0 3.8e-52 177.4 0.0 1.1 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein ABM PF03992.16 EME68899.1 - 0.057 13.5 0.0 0.12 12.6 0.0 1.5 1 1 0 1 1 1 0 Antibiotic biosynthesis monooxygenase TPR_1 PF00515.28 EME68900.1 - 9.9e-16 56.8 2.6 3.1e-06 26.8 0.0 3.6 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_12 PF13424.6 EME68900.1 - 1.2e-15 57.6 23.4 2.7e-10 40.4 3.3 3.7 1 1 4 5 5 5 3 Tetratricopeptide repeat TPR_10 PF13374.6 EME68900.1 - 7.5e-13 47.9 15.0 9.9e-06 25.3 2.4 3.8 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_2 PF07719.17 EME68900.1 - 9e-12 44.2 17.4 3.1e-06 26.9 0.1 4.8 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_14 PF13428.6 EME68900.1 - 1.3e-09 38.0 26.0 0.0013 19.4 0.6 5.2 1 1 4 5 5 5 3 Tetratricopeptide repeat TPR_8 PF13181.6 EME68900.1 - 1.8e-09 37.0 3.1 0.00037 20.5 0.0 4.0 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_16 PF13432.6 EME68900.1 - 2.3e-09 37.8 30.2 1.3e-08 35.3 6.5 3.7 2 1 2 4 4 4 2 Tetratricopeptide repeat TPR_11 PF13414.6 EME68900.1 - 3.6e-09 36.2 7.7 0.00017 21.2 0.5 4.0 2 1 2 4 4 4 2 TPR repeat TPR_7 PF13176.6 EME68900.1 - 1.6e-07 30.9 11.0 0.0016 18.4 0.1 3.7 5 0 0 5 5 4 2 Tetratricopeptide repeat TPR_19 PF14559.6 EME68900.1 - 2.6e-07 31.0 17.5 3.9e-05 24.1 2.4 3.7 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_15 PF13429.6 EME68900.1 - 8.1e-07 28.5 7.0 6.3e-06 25.6 2.7 2.4 1 1 1 2 2 2 1 Tetratricopeptide repeat TPR_17 PF13431.6 EME68900.1 - 3.5e-05 23.9 4.4 0.2 12.1 0.0 4.0 3 0 0 3 3 3 2 Tetratricopeptide repeat Glyco_transf_9 PF01075.17 EME68900.1 - 0.00018 20.9 0.0 0.00033 20.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase family 9 (heptosyltransferase) TPR_5 PF12688.7 EME68900.1 - 0.00036 20.8 3.3 0.00092 19.4 3.3 1.8 1 0 0 1 1 1 1 Tetratrico peptide repeat TPR_4 PF07721.14 EME68900.1 - 0.0004 20.8 7.5 0.0041 17.6 1.1 6.4 6 0 0 6 6 6 2 Tetratricopeptide repeat TPR_9 PF13371.6 EME68900.1 - 0.0058 16.7 10.7 0.015 15.4 5.2 2.9 1 1 1 2 2 2 1 Tetratricopeptide repeat ANAPC3 PF12895.7 EME68900.1 - 0.0078 16.4 1.4 0.068 13.4 0.1 2.2 1 1 1 2 2 2 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_6 PF13174.6 EME68900.1 - 0.017 15.7 6.7 5.2 7.9 0.0 4.3 4 0 0 4 4 3 0 Tetratricopeptide repeat TPR_20 PF14561.6 EME68900.1 - 0.035 14.4 5.8 1.4 9.3 0.1 3.3 2 1 1 3 3 3 0 Tetratricopeptide repeat DHBP_synthase PF00926.19 EME68900.1 - 0.37 10.3 2.0 0.34 10.4 0.3 1.7 2 0 0 2 2 2 0 3,4-dihydroxy-2-butanone 4-phosphate synthase FKBP_C PF00254.28 EME68901.1 - 0.00095 19.4 0.0 0.0012 19.2 0.0 1.3 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase THDPS_N_2 PF14805.6 EME68902.1 - 4.2e-23 81.3 1.7 6.6e-23 80.7 1.7 1.3 1 0 0 1 1 1 1 Tetrahydrodipicolinate N-succinyltransferase N-terminal Hexapep_2 PF14602.6 EME68902.1 - 1.1e-12 47.5 1.8 1.1e-12 47.5 1.8 3.6 4 0 0 4 4 4 1 Hexapeptide repeat of succinyl-transferase Hexapep PF00132.24 EME68902.1 - 4.9e-12 45.1 11.6 9.2e-06 25.2 0.9 3.5 3 0 0 3 3 3 2 Bacterial transferase hexapeptide (six repeats) Peptidase_M20 PF01546.28 EME68903.1 - 1.1e-45 155.9 0.1 5.4e-45 153.7 0.0 1.8 2 0 0 2 2 2 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 EME68903.1 - 3.5e-20 72.0 0.0 7.1e-20 70.9 0.0 1.6 1 0 0 1 1 1 1 Peptidase dimerisation domain TraX PF05857.11 EME68904.1 - 0.0061 16.6 0.9 0.0081 16.2 0.9 1.2 1 0 0 1 1 1 1 TraX protein Yip1 PF04893.17 EME68904.1 - 0.045 13.5 10.2 0.059 13.1 10.2 1.3 1 0 0 1 1 1 0 Yip1 domain Redoxin PF08534.10 EME68905.1 - 5.9e-25 87.7 0.0 6.9e-25 87.5 0.0 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA PF00578.21 EME68905.1 - 1.6e-16 60.3 0.0 1.9e-16 60.1 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Peripla_BP_5 PF13433.6 EME68905.1 - 0.035 13.1 0.0 0.045 12.8 0.0 1.1 1 0 0 1 1 1 0 Periplasmic binding protein domain PAGK PF15284.6 EME68907.1 - 0.13 12.1 0.0 0.25 11.3 0.0 1.5 1 0 0 1 1 1 0 Phage-encoded virulence factor cNMP_binding PF00027.29 EME68908.1 - 3.1e-21 75.2 0.1 4.8e-21 74.6 0.1 1.3 1 0 0 1 1 1 1 Cyclic nucleotide-binding domain FAD_binding_2 PF00890.24 EME68909.1 - 7.2e-101 338.3 5.5 8.7e-101 338.0 5.5 1.1 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.20 EME68909.1 - 1.6e-12 47.5 0.0 4.1e-12 46.2 0.0 1.6 1 1 0 1 1 1 1 Fumarate reductase flavoprotein C-term DAO PF01266.24 EME68909.1 - 1e-09 38.4 7.3 2e-05 24.4 4.0 2.3 1 1 1 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 EME68909.1 - 1.7e-07 30.8 0.5 0.0012 18.1 0.2 2.8 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 EME68909.1 - 5.4e-05 22.1 0.4 0.31 9.7 0.1 2.7 3 0 0 3 3 3 2 HI0933-like protein Thi4 PF01946.17 EME68909.1 - 0.0067 15.7 3.1 0.018 14.3 0.3 2.6 2 1 1 3 3 3 1 Thi4 family Lycopene_cycl PF05834.12 EME68909.1 - 0.031 13.3 0.1 0.053 12.6 0.1 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein Ntox11 PF15521.6 EME68909.1 - 0.087 12.4 0.0 0.13 11.8 0.0 1.2 1 0 0 1 1 1 0 Novel toxin 11 K_oxygenase PF13434.6 EME68909.1 - 0.095 11.8 0.0 9.3 5.3 0.0 2.3 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) QRPTase_C PF01729.19 EME68910.1 - 7.3e-57 191.8 0.1 9.6e-57 191.4 0.1 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 EME68910.1 - 1.7e-28 98.5 0.1 3.9e-28 97.3 0.1 1.6 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain TMP-TENI PF02581.17 EME68910.1 - 0.022 14.1 0.8 0.12 11.6 0.8 2.0 1 1 0 1 1 1 0 Thiamine monophosphate synthase Ribul_P_3_epim PF00834.19 EME68910.1 - 0.06 12.7 1.2 0.15 11.4 0.2 1.9 1 1 1 2 2 2 0 Ribulose-phosphate 3 epimerase family Biotin_lipoyl_2 PF13533.6 EME68910.1 - 0.12 12.3 0.0 0.31 10.9 0.0 1.7 1 0 0 1 1 1 0 Biotin-lipoyl like Biotin_lipoyl PF00364.22 EME68910.1 - 0.12 12.2 0.0 0.29 11.0 0.0 1.6 1 0 0 1 1 1 0 Biotin-requiring enzyme PHB_acc_N PF07879.11 EME68910.1 - 0.17 12.0 0.5 13 6.0 0.0 2.7 3 0 0 3 3 3 0 PHB/PHA accumulation regulator DNA-binding domain NadA PF02445.16 EME68911.1 - 3.1e-117 391.0 0.0 3.5e-117 390.8 0.0 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein DUF2769 PF10967.8 EME68911.1 - 0.026 15.2 0.2 0.061 14.0 0.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2769) Response_reg PF00072.24 EME68912.1 - 5.4e-10 39.4 0.0 6.5e-10 39.2 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain Hpr_kinase_N PF02603.16 EME68912.1 - 0.15 12.1 0.0 0.29 11.2 0.0 1.5 1 0 0 1 1 1 0 HPr Serine kinase N terminus E1-E2_ATPase PF00122.20 EME68913.1 - 6.1e-53 179.0 2.8 1.6e-52 177.6 2.8 1.8 1 0 0 1 1 1 1 E1-E2 ATPase Cation_ATPase_C PF00689.21 EME68913.1 - 4.2e-43 147.2 0.3 8e-43 146.3 0.3 1.5 1 0 0 1 1 1 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.26 EME68913.1 - 8.8e-24 85.0 7.0 3.7e-23 82.9 7.0 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.26 EME68913.1 - 2e-18 65.9 0.0 3.5e-18 65.0 0.0 1.4 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Cation_ATPase PF13246.6 EME68913.1 - 3.4e-13 49.5 0.0 7.2e-13 48.4 0.0 1.5 1 0 0 1 1 1 1 Cation transport ATPase (P-type) HAD PF12710.7 EME68913.1 - 0.00012 22.6 6.0 0.00044 20.7 4.0 2.7 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 EME68913.1 - 0.00062 19.6 0.0 0.028 14.1 0.1 2.1 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase PT-VENN PF04829.13 EME68913.1 - 0.084 13.0 0.1 0.084 13.0 0.1 3.1 2 0 0 2 2 2 0 Pre-toxin domain with VENN motif Response_reg PF00072.24 EME68914.1 - 3.4e-20 72.3 0.0 5.4e-20 71.6 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain GerE PF00196.19 EME68914.1 - 2.4e-18 65.4 0.4 3.9e-18 64.8 0.4 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 EME68914.1 - 3.5e-11 42.6 0.2 7.1e-11 41.6 0.2 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 EME68914.1 - 5e-06 25.9 0.2 1.1e-05 24.8 0.2 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_40 PF14493.6 EME68914.1 - 0.0013 19.1 0.1 0.004 17.6 0.1 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_38 PF13936.6 EME68914.1 - 0.013 15.2 0.0 0.027 14.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_20 PF12840.7 EME68914.1 - 0.015 15.3 0.2 0.1 12.7 0.1 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain DUF742 PF05331.11 EME68914.1 - 0.061 13.1 0.8 0.42 10.4 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF742) HTH_24 PF13412.6 EME68914.1 - 0.064 12.8 0.1 0.44 10.2 0.0 2.2 1 1 1 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 EME68914.1 - 0.089 12.6 5.3 2.5 8.0 0.0 2.7 3 0 0 3 3 2 0 AsnC-type helix-turn-helix domain HTH_23 PF13384.6 EME68914.1 - 0.091 12.6 0.0 0.67 9.8 0.0 2.3 1 1 1 2 2 2 0 Homeodomain-like domain DUF952 PF06108.12 EME68915.1 - 5.5e-28 96.8 0.0 6.6e-28 96.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF952) DHO_dh PF01180.21 EME68916.1 - 2.5e-96 322.4 0.0 2.9e-96 322.2 0.0 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase NMO PF03060.15 EME68916.1 - 0.011 15.1 0.7 0.023 14.1 0.7 1.5 1 0 0 1 1 1 0 Nitronate monooxygenase DUF1454 PF07305.12 EME68916.1 - 0.039 13.4 0.0 0.075 12.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1454) Hydrolase_6 PF13344.6 EME68917.1 - 2.4e-15 56.5 0.0 4.5e-15 55.6 0.0 1.5 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 EME68917.1 - 1.4e-14 53.9 0.2 3.3e-14 52.7 0.2 1.7 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.26 EME68917.1 - 2.9e-10 40.8 0.4 7.1e-05 23.2 0.2 2.3 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 EME68917.1 - 7.2e-09 36.0 0.0 9.8e-07 29.0 0.0 2.1 2 0 0 2 2 2 2 Haloacid dehalogenase-like hydrolase YAcAr PF10686.9 EME68917.1 - 0.016 15.2 1.0 0.41 10.6 0.0 2.4 2 0 0 2 2 2 0 YspA, cpYpsA-related SLOG family HAD PF12710.7 EME68917.1 - 0.088 13.2 0.8 1.2 9.6 0.0 2.6 2 1 1 3 3 3 0 haloacid dehalogenase-like hydrolase Pyr_redox_2 PF07992.14 EME68918.1 - 1.1e-22 80.7 0.0 1.3e-22 80.4 0.0 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 EME68918.1 - 1.4e-18 67.2 0.0 4.2e-16 59.1 0.0 2.0 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 EME68918.1 - 1.1e-09 38.7 1.4 1.2e-08 35.4 0.1 2.5 3 0 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 EME68918.1 - 1.6e-06 27.1 0.1 0.1 11.3 0.4 3.1 3 0 0 3 3 3 2 HI0933-like protein NAD_binding_7 PF13241.6 EME68918.1 - 0.00024 21.5 1.2 0.0052 17.2 0.1 2.3 2 0 0 2 2 2 1 Putative NAD(P)-binding FMO-like PF00743.19 EME68918.1 - 0.00051 18.6 0.0 0.00078 18.0 0.0 1.2 1 0 0 1 1 1 1 Flavin-binding monooxygenase-like NAD_binding_9 PF13454.6 EME68918.1 - 0.001 19.1 0.1 0.072 13.1 0.0 2.5 2 0 0 2 2 2 1 FAD-NAD(P)-binding K_oxygenase PF13434.6 EME68918.1 - 0.0034 16.6 0.0 0.0097 15.1 0.0 1.7 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) DAO PF01266.24 EME68918.1 - 0.0036 17.0 1.1 1.5 8.3 0.0 2.6 2 1 0 2 2 2 2 FAD dependent oxidoreductase Oxidored_nitro PF00148.19 EME68918.1 - 0.009 14.8 0.0 0.013 14.3 0.0 1.2 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase NAD_binding_8 PF13450.6 EME68918.1 - 0.012 15.8 0.3 0.037 14.3 0.0 2.0 2 0 0 2 2 1 0 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 EME68918.1 - 0.02 14.2 0.3 0.33 10.2 0.2 2.1 2 0 0 2 2 2 0 Thi4 family XdhC_C PF13478.6 EME68918.1 - 0.049 14.1 0.1 4.5 7.8 0.0 2.2 2 0 0 2 2 2 0 XdhC Rossmann domain DUF43 PF01861.16 EME68918.1 - 0.067 12.4 0.0 0.098 11.9 0.0 1.1 1 0 0 1 1 1 0 Branched-chain polyamine synthase A C-terminal domain Amino_oxidase PF01593.24 EME68918.1 - 0.11 11.7 0.0 0.5 9.6 0.0 2.0 2 1 1 3 3 3 0 Flavin containing amine oxidoreductase FAD_binding_3 PF01494.19 EME68918.1 - 0.16 11.2 3.0 0.53 9.5 0.6 2.2 2 1 0 2 2 2 0 FAD binding domain DUF2336 PF10098.9 EME68919.1 - 1.8e-62 211.2 35.6 1.8e-60 204.6 19.4 2.5 2 1 0 2 2 2 2 Uncharacterised protein conserved in bacteria (DUF2336) LRV PF01816.17 EME68919.1 - 0.003 17.8 1.2 0.003 17.8 1.2 7.5 10 0 0 10 10 10 2 Leucine rich repeat variant Dicer_dimer PF03368.14 EME68919.1 - 0.066 13.4 1.6 0.16 12.2 0.2 2.2 2 0 0 2 2 2 0 Dicer dimerisation domain GYF_2 PF14237.6 EME68919.1 - 0.13 12.1 0.1 0.82 9.5 0.0 2.4 2 0 0 2 2 2 0 GYF domain 2 HEAT PF02985.22 EME68919.1 - 0.77 10.2 8.6 2.7 8.5 0.1 5.1 6 0 0 6 6 6 0 HEAT repeat GGDEF PF00990.21 EME68920.1 - 1e-38 132.6 0.0 1.8e-38 131.8 0.0 1.4 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain PAS_4 PF08448.10 EME68920.1 - 1.3e-09 38.3 0.6 0.00013 22.2 0.1 4.0 2 2 1 3 3 3 2 PAS fold PAS_9 PF13426.7 EME68920.1 - 2.8e-08 33.9 0.0 5e-07 29.9 0.0 2.7 2 0 0 2 2 2 1 PAS domain PAS PF00989.25 EME68920.1 - 1.6e-07 31.3 0.0 0.00061 19.8 0.0 2.7 2 0 0 2 2 2 2 PAS fold GAF_3 PF13492.6 EME68920.1 - 0.0016 18.8 0.1 0.14 12.5 0.1 2.6 1 1 0 1 1 1 1 GAF domain HAD_2 PF13419.6 EME68921.1 - 1.1e-10 42.0 0.0 7e-10 39.3 0.0 2.0 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 EME68921.1 - 1e-07 32.5 0.0 8.3e-06 26.2 0.0 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 EME68921.1 - 2.5e-05 24.3 0.0 5.1e-05 23.2 0.0 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 EME68921.1 - 0.0023 18.3 0.3 0.0034 17.8 0.3 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase SecA_DEAD PF07517.14 EME68922.1 - 4e-133 443.2 0.8 7.2e-133 442.3 0.8 1.4 1 0 0 1 1 1 1 SecA DEAD-like domain SecA_SW PF07516.13 EME68922.1 - 1.1e-64 218.2 6.5 1.1e-64 218.2 6.5 2.2 3 1 0 3 3 3 1 SecA Wing and Scaffold domain SecA_PP_bind PF01043.20 EME68922.1 - 4e-38 130.5 3.1 1.4e-37 128.7 0.5 3.1 3 0 0 3 3 3 1 SecA preprotein cross-linking domain SEC-C PF02810.15 EME68922.1 - 2.2e-10 40.2 8.2 3.6e-10 39.6 8.2 1.3 1 0 0 1 1 1 1 SEC-C motif DEAD PF00270.29 EME68922.1 - 0.00049 19.9 0.0 0.0017 18.1 0.0 1.9 2 0 0 2 2 2 1 DEAD/DEAH box helicase AAA_19 PF13245.6 EME68922.1 - 0.008 16.5 0.4 0.067 13.5 0.2 2.4 2 0 0 2 2 2 1 AAA domain Helicase_C PF00271.31 EME68922.1 - 0.12 12.8 0.2 0.57 10.5 0.2 2.3 1 1 0 1 1 1 0 Helicase conserved C-terminal domain 3HCDH_N PF02737.18 EME68923.1 - 1.5e-63 214.0 0.1 1.9e-63 213.6 0.1 1.1 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.22 EME68923.1 - 5.2e-34 116.7 0.0 1.6e-33 115.2 0.0 1.8 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_binding_2 PF03446.15 EME68923.1 - 4.7e-06 26.9 0.2 1.2e-05 25.5 0.2 1.7 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 EME68923.1 - 0.00029 20.2 0.5 0.00064 19.1 0.4 1.6 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 EME68923.1 - 0.0012 18.4 0.5 0.0022 17.6 0.4 1.5 1 1 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain F420_oxidored PF03807.17 EME68923.1 - 0.0031 18.0 3.4 0.0064 17.0 3.4 1.7 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Sacchrp_dh_NADP PF03435.18 EME68923.1 - 0.0042 17.3 0.2 0.0088 16.3 0.2 1.6 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NAD_Gly3P_dh_N PF01210.23 EME68923.1 - 0.037 14.0 0.2 0.1 12.6 0.1 1.8 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus adh_short_C2 PF13561.6 EME68923.1 - 0.051 13.1 0.3 0.07 12.7 0.3 1.2 1 0 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase ApbA PF02558.16 EME68923.1 - 0.079 12.6 0.5 0.13 11.9 0.5 1.5 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_binding_7 PF13241.6 EME68923.1 - 0.11 12.9 0.1 0.18 12.2 0.1 1.3 1 0 0 1 1 1 0 Putative NAD(P)-binding Ldh_1_N PF00056.23 EME68923.1 - 0.24 11.5 1.3 1.6 8.8 1.3 2.1 1 1 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain NAD_binding_10 PF13460.6 EME68924.1 - 3.3e-07 30.4 0.1 3.5e-07 30.3 0.1 1.0 1 0 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 EME68924.1 - 0.0034 17.0 0.0 0.0039 16.8 0.0 1.0 1 0 0 1 1 1 1 NmrA-like family adh_short_C2 PF13561.6 EME68924.1 - 0.086 12.4 0.1 0.1 12.1 0.1 1.0 1 0 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase RmlD_sub_bind PF04321.17 EME68924.1 - 0.11 11.5 0.0 0.12 11.4 0.0 1.0 1 0 0 1 1 1 0 RmlD substrate binding domain Epimerase PF01370.21 EME68924.1 - 0.13 11.7 0.0 0.13 11.7 0.0 1.0 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family adh_short PF00106.25 EME68924.1 - 0.17 11.3 0.0 0.2 11.1 0.0 1.1 1 0 0 1 1 1 0 short chain dehydrogenase ChuX_HutX PF06228.13 EME68925.1 - 5.9e-33 113.5 0.0 7e-33 113.2 0.0 1.1 1 0 0 1 1 1 1 Haem utilisation ChuX/HutX HemS PF05171.12 EME68925.1 - 5.1e-08 32.9 0.0 6e-08 32.7 0.0 1.1 1 0 0 1 1 1 1 Haemin-degrading HemS.ChuX domain Hce2 PF14856.6 EME68925.1 - 0.13 12.6 0.0 0.21 11.9 0.0 1.4 1 0 0 1 1 1 0 Pathogen effector; putative necrosis-inducing factor Radical_SAM PF04055.21 EME68926.1 - 1e-19 71.6 0.0 1.5e-19 71.0 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily HemN_C PF06969.16 EME68926.1 - 0.0004 20.4 0.1 0.00098 19.1 0.1 1.7 1 0 0 1 1 1 1 HemN C-terminal domain BATS PF06968.13 EME68926.1 - 0.019 15.1 0.0 0.34 11.1 0.0 2.3 2 0 0 2 2 2 0 Biotin and Thiamin Synthesis associated domain ABC_tran PF00005.27 EME68927.1 - 4.7e-27 95.2 0.0 6.5e-27 94.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 EME68927.1 - 5.3e-06 26.5 0.0 0.0003 20.7 0.0 2.1 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 EME68927.1 - 7.9e-05 22.2 0.0 0.085 12.3 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 EME68927.1 - 0.00095 19.6 0.2 0.0014 19.0 0.2 1.5 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 EME68927.1 - 0.0014 18.6 0.1 0.0023 17.9 0.1 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_29 PF13555.6 EME68927.1 - 0.0042 16.8 0.0 0.011 15.5 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 EME68927.1 - 0.0071 16.9 0.0 0.0096 16.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain SbcCD_C PF13558.6 EME68927.1 - 0.0073 16.5 0.0 0.013 15.8 0.0 1.4 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_15 PF13175.6 EME68927.1 - 0.021 14.6 0.0 0.032 14.0 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.6 EME68927.1 - 0.04 13.6 0.1 0.43 10.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 EME68927.1 - 0.053 13.6 0.0 0.11 12.5 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_33 PF13671.6 EME68927.1 - 0.075 13.2 0.0 0.69 10.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 EME68927.1 - 0.11 13.0 0.1 0.32 11.4 0.0 1.7 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.6 EME68927.1 - 0.11 12.1 0.1 0.3 10.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.12 EME68927.1 - 0.18 11.0 0.0 0.29 10.4 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin DUF3584 PF12128.8 EME68927.1 - 0.2 9.1 0.0 0.26 8.7 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) FecCD PF01032.18 EME68928.1 - 9e-92 307.4 38.8 1.1e-91 307.1 38.8 1.0 1 0 0 1 1 1 1 FecCD transport family Peripla_BP_2 PF01497.18 EME68929.1 - 3.3e-34 118.5 0.0 4.2e-34 118.2 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_4 PF13407.6 EME68929.1 - 0.028 14.0 0.0 0.055 13.0 0.0 1.4 1 1 0 1 1 1 0 Periplasmic binding protein domain TonB_dep_Rec PF00593.24 EME68930.1 - 4.2e-37 129.1 28.8 8.7e-37 128.1 28.9 1.5 1 1 0 1 1 1 1 TonB dependent receptor Plug PF07715.15 EME68930.1 - 1.5e-24 86.6 0.2 5.1e-24 84.9 0.2 2.0 1 0 0 1 1 1 1 TonB-dependent Receptor Plug Domain OMP_b-brl_3 PF14905.6 EME68930.1 - 2.4e-08 33.4 0.0 1.6e-07 30.7 0.0 2.0 1 1 1 2 2 2 1 Outer membrane protein beta-barrel family Cation_efflux PF01545.21 EME68931.1 - 2e-34 119.1 11.5 2.6e-34 118.7 11.5 1.2 1 0 0 1 1 1 1 Cation efflux family MarR PF01047.22 EME68932.1 - 1.2e-09 37.9 0.0 2.9e-09 36.7 0.0 1.6 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.7 EME68932.1 - 4e-09 36.2 0.3 3.1e-08 33.4 0.1 2.2 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.6 EME68932.1 - 4.2e-06 27.2 0.1 9.8e-06 26.0 0.0 1.6 2 0 0 2 2 2 1 Winged helix DNA-binding domain TrmB PF01978.19 EME68932.1 - 0.00026 20.8 0.0 0.00055 19.8 0.0 1.5 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB GntR PF00392.21 EME68932.1 - 0.0075 15.9 0.1 0.015 14.9 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_Crp_2 PF13545.6 EME68932.1 - 0.017 15.1 0.2 0.031 14.3 0.2 1.6 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_29 PF13551.6 EME68932.1 - 0.076 13.0 0.1 0.14 12.2 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn helix Peripla_BP_6 PF13458.6 EME68933.1 - 3.7e-64 217.5 1.7 4.3e-64 217.3 1.7 1.0 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 EME68933.1 - 5.4e-28 98.0 0.0 7.2e-28 97.6 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.28 EME68933.1 - 1.6e-12 47.2 0.0 2.6e-12 46.6 0.0 1.2 1 0 0 1 1 1 1 Receptor family ligand binding region Lysine_decarbox PF03641.14 EME68934.1 - 5.5e-44 149.5 0.1 6.6e-44 149.2 0.1 1.1 1 0 0 1 1 1 1 Possible lysine decarboxylase LDcluster4 PF18306.1 EME68934.1 - 3.3e-18 65.8 0.4 4.2e-18 65.4 0.4 1.1 1 0 0 1 1 1 1 SLOG cluster4 family LSDAT_prok PF18171.1 EME68934.1 - 0.021 14.1 0.2 0.026 13.8 0.2 1.2 1 0 0 1 1 1 0 SLOG in TRPM, prokaryote TMP-TENI PF02581.17 EME68935.1 - 6.5e-51 172.2 0.0 7.4e-51 172.0 0.0 1.0 1 0 0 1 1 1 1 Thiamine monophosphate synthase RuBisCO_large PF00016.20 EME68935.1 - 0.075 12.2 0.2 0.17 11.0 0.0 1.5 1 1 0 1 1 1 0 Ribulose bisphosphate carboxylase large chain, catalytic domain VirB8 PF04335.13 EME68936.1 - 0.11 12.3 0.8 0.12 12.2 0.8 1.1 1 0 0 1 1 1 0 VirB8 protein DUF4072 PF13284.6 EME68936.1 - 1.8 9.0 6.1 0.64 10.5 3.1 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4072) FSA_C PF10479.9 EME68936.1 - 4.9 5.2 6.7 5.4 5.0 6.7 1.0 1 0 0 1 1 1 0 Fragile site-associated protein C-terminus FliD_C PF07195.12 EME68937.1 - 3.8e-07 29.8 0.0 7e-07 28.9 0.0 1.5 1 0 0 1 1 1 1 Flagellar hook-associated protein 2 C-terminus Flagellin_IN PF07196.13 EME68937.1 - 0.0017 18.5 0.4 0.0052 16.9 0.4 1.9 1 0 0 1 1 1 1 Flagellin hook IN motif NAD_binding_3 PF03447.16 EME68938.1 - 0.074 13.7 0.0 0.48 11.1 0.0 2.1 2 0 0 2 2 2 0 Homoserine dehydrogenase, NAD binding domain Aminotran_5 PF00266.19 EME68938.1 - 0.1 11.6 0.0 0.43 9.5 0.0 1.8 2 0 0 2 2 2 0 Aminotransferase class-V TPR_19 PF14559.6 EME68939.1 - 0.017 15.6 0.9 0.047 14.2 0.9 1.7 1 0 0 1 1 1 0 Tetratricopeptide repeat R2K_3 PF14243.6 EME68939.1 - 0.043 13.8 0.0 0.085 12.9 0.0 1.5 1 0 0 1 1 1 0 ATP-grasp domain, R2K clade family 3 Pyridoxal_deC PF00282.19 EME68940.1 - 2.3e-57 194.5 0.0 3.2e-57 194.0 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Abhydrolase_1 PF00561.20 EME68940.1 - 2.5e-23 83.0 0.1 2.3e-18 66.8 1.4 2.3 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 EME68940.1 - 1.3e-21 78.2 23.2 1.3e-21 78.2 23.2 3.6 1 1 1 2 2 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 EME68940.1 - 4.9e-19 68.5 2.0 2.5e-18 66.2 2.0 2.1 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Thioesterase PF00975.20 EME68940.1 - 1.8e-07 31.5 0.6 3.3e-07 30.7 0.6 1.5 1 0 0 1 1 1 1 Thioesterase domain DLH PF01738.18 EME68940.1 - 3e-05 23.7 0.4 0.0047 16.5 0.0 2.8 2 1 0 2 2 2 1 Dienelactone hydrolase family Beta_elim_lyase PF01212.21 EME68940.1 - 0.00014 21.3 0.0 0.00023 20.6 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Chlorophyllase2 PF12740.7 EME68940.1 - 0.00096 18.1 0.0 0.0016 17.4 0.0 1.2 1 0 0 1 1 1 1 Chlorophyllase enzyme Esterase PF00756.20 EME68940.1 - 0.003 17.3 0.6 0.003 17.3 0.6 1.7 2 0 0 2 2 2 1 Putative esterase Acyl_transf_1 PF00698.21 EME68940.1 - 0.0036 16.9 1.8 0.008 15.7 1.8 1.5 1 0 0 1 1 1 1 Acyl transferase domain Chlorophyllase PF07224.11 EME68940.1 - 0.0098 14.9 0.2 0.016 14.3 0.2 1.2 1 0 0 1 1 1 1 Chlorophyllase Ser_hydrolase PF06821.13 EME68940.1 - 0.019 14.9 3.4 1.9 8.3 3.4 2.5 1 1 0 1 1 1 0 Serine hydrolase Abhydrolase_5 PF12695.7 EME68940.1 - 0.065 13.0 0.0 0.2 11.4 0.0 1.8 1 1 0 1 1 1 0 Alpha/beta hydrolase family Abhydrolase_4 PF08386.10 EME68940.1 - 0.094 12.8 0.0 0.28 11.3 0.0 1.8 1 0 0 1 1 1 0 TAP-like protein PAF-AH_p_II PF03403.13 EME68940.1 - 0.16 10.5 0.7 0.6 8.6 0.1 1.9 1 1 1 2 2 2 0 Platelet-activating factor acetylhydrolase, isoform II PGAP1 PF07819.13 EME68940.1 - 0.26 11.0 0.1 15 5.2 0.0 2.2 2 0 0 2 2 2 0 PGAP1-like protein CoA_binding_2 PF13380.6 EME68941.1 - 2.5e-41 140.8 0.0 2.9e-41 140.6 0.0 1.0 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.19 EME68941.1 - 1e-05 26.2 0.0 1.5e-05 25.6 0.0 1.2 1 0 0 1 1 1 1 CoA binding domain Ribul_P_3_epim PF00834.19 EME68941.1 - 0.033 13.6 0.0 0.046 13.1 0.0 1.3 1 1 0 1 1 1 0 Ribulose-phosphate 3 epimerase family PAS_7 PF12860.7 EME68942.1 - 1.2e-40 138.3 0.0 3.4e-22 78.8 0.0 3.7 3 0 0 3 3 3 3 PAS fold HATPase_c PF02518.26 EME68942.1 - 4.5e-29 101.2 0.0 1e-28 100.1 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 EME68942.1 - 1.5e-24 85.5 1.1 1.3e-07 31.5 0.0 3.9 4 0 0 4 4 4 3 PAS domain HisKA PF00512.25 EME68942.1 - 5.7e-21 74.3 10.2 7.3e-20 70.8 0.0 4.6 5 0 0 5 5 5 1 His Kinase A (phospho-acceptor) domain PAS PF00989.25 EME68942.1 - 2.5e-20 72.6 0.1 4.1e-15 55.7 0.0 3.1 3 0 0 3 3 3 2 PAS fold PAS_9 PF13426.7 EME68942.1 - 5.8e-18 65.1 0.0 5.6e-14 52.3 0.0 3.4 3 0 0 3 3 3 2 PAS domain PAS_4 PF08448.10 EME68942.1 - 6.6e-15 55.3 0.1 7.8e-09 35.8 0.0 3.9 3 1 0 3 3 3 2 PAS fold HATPase_c_3 PF13589.6 EME68942.1 - 0.0086 15.9 0.0 0.021 14.7 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 EME68942.1 - 0.014 15.3 0.0 0.036 14.0 0.0 1.7 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain MLTR_LBD PF17765.1 EME68942.1 - 0.024 14.8 0.6 3.7 7.6 0.0 2.7 2 0 0 2 2 2 0 MmyB-like transcription regulator ligand binding domain Pribosyltran PF00156.27 EME68943.1 - 6.9e-19 67.9 0.0 8.6e-19 67.6 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 EME68943.1 - 0.00057 19.4 0.0 0.00071 19.1 0.0 1.1 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 EME68943.1 - 0.21 11.1 0.0 0.28 10.7 0.0 1.2 1 0 0 1 1 1 0 Phosphoribosyl transferase Glyco_transf_9 PF01075.17 EME68944.1 - 8.7e-18 64.5 0.0 1.3e-17 63.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase family 9 (heptosyltransferase) Formyl_trans_N PF00551.19 EME68945.1 - 2e-60 203.6 0.0 2.3e-60 203.4 0.0 1.0 1 0 0 1 1 1 1 Formyl transferase AIRS_C PF02769.22 EME68946.1 - 1.8e-38 132.1 0.6 3.1e-38 131.4 0.6 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 EME68946.1 - 2.1e-15 57.1 1.2 4e-15 56.3 1.2 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain DUF2066 PF09839.9 EME68947.1 - 5.3e-30 104.5 0.4 8.5e-30 103.9 0.4 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2066) HTH_33 PF13592.6 EME68947.1 - 0.013 15.1 0.1 0.04 13.5 0.1 1.9 1 0 0 1 1 1 0 Winged helix-turn helix AI-2E_transport PF01594.16 EME68948.1 - 2.5e-60 204.4 21.5 3.2e-60 204.0 21.5 1.0 1 0 0 1 1 1 1 AI-2E family transporter DUF5518 PF17647.1 EME68948.1 - 0.0049 17.0 5.5 0.0049 17.0 5.5 4.4 3 1 1 4 4 4 1 Family of unknown function (DUF5518) CCB1 PF12046.8 EME68948.1 - 0.17 11.2 1.0 12 5.2 0.0 2.6 2 0 0 2 2 2 0 Cofactor assembly of complex C subunit B Bac_DnaA PF00308.18 EME68949.1 - 3.2e-05 23.9 0.0 0.0022 17.9 0.0 2.0 2 0 0 2 2 2 1 Bacterial dnaA protein AAA_16 PF13191.6 EME68949.1 - 0.0091 16.4 0.1 0.016 15.6 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.6 EME68949.1 - 0.018 15.2 0.0 0.025 14.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 EME68949.1 - 0.019 14.7 0.1 0.17 11.6 0.4 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein Zeta_toxin PF06414.12 EME68949.1 - 0.02 14.2 0.0 0.032 13.5 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin AAA_22 PF13401.6 EME68949.1 - 0.055 13.7 0.0 0.096 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 EME68949.1 - 0.075 12.6 0.1 0.17 11.5 0.0 1.7 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 EME68949.1 - 0.093 12.6 0.0 0.2 11.6 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_18 PF13238.6 EME68949.1 - 0.098 13.2 0.0 0.16 12.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 EME68949.1 - 0.2 12.1 0.0 0.36 11.3 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) PhoH PF02562.16 EME68949.1 - 0.24 10.8 0.1 0.38 10.2 0.1 1.2 1 0 0 1 1 1 0 PhoH-like protein adh_short_C2 PF13561.6 EME68950.1 - 9.1e-41 139.9 0.1 1.5e-40 139.2 0.1 1.3 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 EME68950.1 - 2.8e-35 121.5 0.0 3.9e-35 121.1 0.0 1.2 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 EME68950.1 - 1.8e-05 24.7 0.0 2.9e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.6 EME68950.1 - 0.0011 19.0 0.2 0.0017 18.3 0.2 1.3 1 0 0 1 1 1 1 NAD(P)H-binding 3HCDH_N PF02737.18 EME68950.1 - 0.15 11.9 0.1 0.27 11.1 0.1 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TPR_2 PF07719.17 EME68951.1 - 1.4e-28 96.6 9.2 0.00013 21.8 0.1 8.3 8 0 0 8 8 8 6 Tetratricopeptide repeat TPR_16 PF13432.6 EME68951.1 - 1.4e-28 99.2 26.0 3.1e-08 34.1 1.4 5.6 3 2 2 5 5 5 5 Tetratricopeptide repeat Glyco_transf_41 PF13844.6 EME68951.1 - 7.5e-26 90.6 0.0 1.8e-14 53.1 0.0 2.1 2 0 0 2 2 2 2 Glycosyl transferase family 41 TPR_14 PF13428.6 EME68951.1 - 5.9e-25 85.8 21.5 0.00016 22.2 0.1 8.3 1 1 6 7 7 7 6 Tetratricopeptide repeat TPR_19 PF14559.6 EME68951.1 - 1.9e-23 82.8 13.6 2.3e-06 28.0 0.4 4.6 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_17 PF13431.6 EME68951.1 - 5.7e-22 76.5 8.5 9.9e-05 22.5 0.1 7.5 7 0 0 7 7 7 6 Tetratricopeptide repeat TPR_11 PF13414.6 EME68951.1 - 1.9e-18 65.8 4.9 1e-05 25.1 0.0 5.7 2 2 3 5 5 5 5 TPR repeat TPR_1 PF00515.28 EME68951.1 - 3.2e-18 64.7 5.3 0.00029 20.5 0.1 6.1 6 0 0 6 6 6 4 Tetratricopeptide repeat TPR_8 PF13181.6 EME68951.1 - 6.8e-17 60.2 0.2 0.019 15.1 0.0 6.4 7 0 0 7 7 6 4 Tetratricopeptide repeat TPR_6 PF13174.6 EME68951.1 - 5.6e-16 58.0 5.3 0.028 15.1 0.0 7.8 7 0 0 7 7 7 2 Tetratricopeptide repeat TPR_12 PF13424.6 EME68951.1 - 1.4e-11 44.5 20.9 0.0015 18.8 2.3 6.2 3 3 2 5 5 5 4 Tetratricopeptide repeat TPR_9 PF13371.6 EME68951.1 - 7e-10 38.9 15.5 4.1e-05 23.6 0.5 5.0 1 1 3 4 4 4 2 Tetratricopeptide repeat TPR_7 PF13176.6 EME68951.1 - 1.9e-08 33.7 12.1 0.13 12.4 0.0 7.0 7 1 1 8 8 8 3 Tetratricopeptide repeat BTAD PF03704.17 EME68951.1 - 2.2e-07 31.4 12.5 0.021 15.2 0.6 4.2 2 1 2 4 4 4 3 Bacterial transcriptional activator domain TPR_10 PF13374.6 EME68951.1 - 3.8e-07 29.8 31.4 0.061 13.2 0.1 7.3 8 0 0 8 8 8 4 Tetratricopeptide repeat TPR_4 PF07721.14 EME68951.1 - 5e-07 29.7 34.3 0.75 10.6 0.6 8.7 8 0 0 8 8 8 3 Tetratricopeptide repeat ANAPC3 PF12895.7 EME68951.1 - 5.3e-07 29.8 0.0 0.11 12.7 0.0 3.4 3 0 0 3 3 3 2 Anaphase-promoting complex, cyclosome, subunit 3 HrpB1_HrpK PF09613.10 EME68951.1 - 3e-05 23.7 1.0 0.12 12.1 0.1 3.3 1 1 1 3 3 3 2 Bacterial type III secretion protein (HrpB1_HrpK) TPR_15 PF13429.6 EME68951.1 - 0.00018 20.8 5.1 0.021 14.1 3.9 3.0 1 1 1 2 2 2 1 Tetratricopeptide repeat TPR_20 PF14561.6 EME68951.1 - 0.0011 19.3 9.1 1.6 9.1 0.1 4.3 3 1 0 4 4 3 2 Tetratricopeptide repeat PknG_TPR PF16918.5 EME68951.1 - 0.0014 17.5 1.5 0.033 12.9 0.5 2.7 2 1 1 3 3 3 2 Protein kinase G tetratricopeptide repeat Glyco_trans_1_4 PF13692.6 EME68951.1 - 0.0063 16.9 0.0 0.02 15.3 0.0 1.9 1 0 0 1 1 1 1 Glycosyl transferases group 1 Wzy_C_2 PF11846.8 EME68951.1 - 0.015 15.2 0.3 0.38 10.7 0.0 2.7 2 1 1 3 3 3 0 Virulence factor membrane-bound polymerase, C-terminal YfiO PF13525.6 EME68951.1 - 0.044 13.5 0.0 0.28 10.9 0.0 2.3 3 0 0 3 3 3 0 Outer membrane lipoprotein NARP1 PF12569.8 EME68951.1 - 0.082 11.8 0.0 0.69 8.7 0.0 2.2 2 1 0 2 2 2 0 NMDA receptor-regulated protein 1 PPR PF01535.20 EME68951.1 - 0.098 12.9 0.2 45 4.6 0.0 4.5 6 0 0 6 6 3 0 PPR repeat DUF3856 PF12968.7 EME68951.1 - 0.11 12.6 0.5 1.7 8.7 0.2 2.9 2 1 1 3 3 3 0 Domain of Unknown Function (DUF3856) HemY_N PF07219.13 EME68951.1 - 0.24 11.6 3.2 22 5.3 2.6 3.3 1 1 0 1 1 1 0 HemY protein N-terminus TAF1_subA PF14929.6 EME68951.1 - 0.28 10.6 0.0 8.5 5.7 0.0 2.2 2 0 0 2 2 2 0 TAF RNA Polymerase I subunit A His_Phos_1 PF00300.22 EME68952.1 - 1.9e-10 40.7 0.2 2.9e-10 40.2 0.2 1.3 1 0 0 1 1 1 1 Histidine phosphatase superfamily (branch 1) PP_kinase_C_1 PF17941.1 EME68953.1 - 5.9e-74 247.2 0.0 1.3e-73 246.0 0.0 1.6 2 0 0 2 2 2 1 Polyphosphate kinase C-terminal domain 1 PP_kinase_C PF13090.6 EME68953.1 - 7.6e-62 207.8 0.0 3.9e-60 202.2 0.0 2.6 3 0 0 3 3 3 1 Polyphosphate kinase C-terminal domain 2 PP_kinase PF02503.17 EME68953.1 - 9.8e-54 182.0 0.1 1.4e-53 181.5 0.1 1.2 1 0 0 1 1 1 1 Polyphosphate kinase middle domain PP_kinase_N PF13089.6 EME68953.1 - 1.8e-36 124.7 0.0 3.3e-36 123.9 0.0 1.5 1 0 0 1 1 1 1 Polyphosphate kinase N-terminal domain PLDc_2 PF13091.6 EME68953.1 - 1.3e-08 34.8 0.0 0.0023 17.8 0.0 3.1 2 1 0 2 2 2 2 PLD-like domain MR_MLE_C PF13378.6 EME68953.1 - 0.024 14.2 1.7 0.052 13.1 1.1 1.8 2 0 0 2 2 2 0 Enolase C-terminal domain-like Ppx-GppA PF02541.16 EME68954.1 - 5.7e-40 137.5 0.0 7.9e-40 137.1 0.0 1.2 1 0 0 1 1 1 1 Ppx/GppA phosphatase family DDR PF08841.10 EME68954.1 - 0.00078 18.5 0.2 0.0015 17.6 0.2 1.4 1 0 0 1 1 1 1 Diol dehydratase reactivase ATPase-like domain HHH_5 PF14520.6 EME68954.1 - 0.15 12.7 0.0 0.42 11.3 0.0 1.7 1 0 0 1 1 1 0 Helix-hairpin-helix domain TAT_signal PF10518.9 EME68955.1 - 0.0039 17.0 7.4 0.01 15.6 7.4 1.8 1 1 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence DSBA PF01323.20 EME68956.1 - 3.6e-08 33.4 0.0 1.2e-07 31.8 0.0 1.7 1 1 0 1 1 1 1 DSBA-like thioredoxin domain Thioredoxin_5 PF13743.6 EME68956.1 - 0.039 13.6 0.0 0.092 12.4 0.0 1.7 1 1 0 1 1 1 0 Thioredoxin LysR_substrate PF03466.20 EME68957.1 - 1.6e-38 132.2 6.1 2.2e-38 131.7 6.1 1.2 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 EME68957.1 - 6.8e-22 77.2 1.2 1.5e-21 76.1 1.2 1.6 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family MarR_2 PF12802.7 EME68957.1 - 0.0088 15.9 0.1 0.027 14.4 0.1 1.8 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.19 EME68957.1 - 0.027 14.7 0.1 0.052 13.7 0.1 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_24 PF13412.6 EME68957.1 - 0.073 12.6 0.0 0.16 11.6 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 EME68957.1 - 0.08 13.0 0.7 1 9.5 0.2 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain 5_nucleotid_C PF02872.18 EME68958.1 - 7e-47 159.6 0.0 1.2e-46 158.8 0.0 1.4 1 0 0 1 1 1 1 5'-nucleotidase, C-terminal domain Metallophos PF00149.28 EME68958.1 - 1.3e-10 42.1 0.0 1.9e-10 41.6 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase PGA_cap PF09587.10 EME68958.1 - 0.0027 17.2 0.0 0.005 16.3 0.0 1.4 1 0 0 1 1 1 1 Bacterial capsule synthesis protein PGA_cap CMD PF02627.20 EME68959.1 - 2.6e-14 53.0 0.3 6e-11 42.3 0.0 2.3 1 1 1 2 2 2 2 Carboxymuconolactone decarboxylase family PA26 PF04636.13 EME68959.1 - 0.032 13.2 0.0 0.035 13.0 0.0 1.1 1 0 0 1 1 1 0 PA26 p53-induced protein (sestrin) TAL_effector PF03377.13 EME68959.1 - 0.13 12.7 0.2 6.3 7.2 0.0 2.6 2 0 0 2 2 2 0 TAL effector repeat 4HBT PF03061.22 EME68960.1 - 1.2e-15 57.6 0.2 1.8e-15 57.1 0.2 1.3 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.6 EME68960.1 - 1.1e-12 48.2 0.1 1.2e-12 48.1 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) 4HBT_3 PF13622.6 EME68960.1 - 0.00052 20.3 0.3 0.0007 19.9 0.3 1.2 1 0 0 1 1 1 1 Thioesterase-like superfamily Usp PF00582.26 EME68961.1 - 3.6e-19 69.7 3.2 2.3e-11 44.4 0.2 2.4 2 1 0 2 2 2 2 Universal stress protein family Acyl-CoA_dh_1 PF00441.24 EME68962.1 - 6.3e-54 182.3 3.1 9.9e-54 181.6 3.1 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 EME68962.1 - 6.7e-38 129.8 1.6 1.5e-37 128.7 0.0 2.3 3 0 0 3 3 3 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.11 EME68962.1 - 1.7e-29 102.8 3.7 3.8e-29 101.7 3.7 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 EME68962.1 - 1.1e-26 92.8 0.0 2e-26 92.0 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain HpaB_N PF11794.8 EME68962.1 - 0.081 12.6 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 4-hydroxyphenylacetate 3-hydroxylase N terminal AMP-binding_C PF13193.6 EME68962.1 - 0.15 13.1 0.0 0.44 11.6 0.0 1.8 2 0 0 2 2 2 0 AMP-binding enzyme C-terminal domain Thiolase_N PF00108.23 EME68963.1 - 1e-84 283.9 2.2 1.8e-84 283.1 2.2 1.4 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 EME68963.1 - 8.9e-41 138.4 1.6 8.9e-41 138.4 1.6 2.7 3 0 0 3 3 3 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 EME68963.1 - 0.021 14.4 8.1 0.071 12.7 1.7 3.5 2 1 1 3 3 3 0 Beta-ketoacyl synthase, N-terminal domain NTP_transf_2 PF01909.23 EME68964.1 - 3.2e-12 46.6 0.0 3.6e-12 46.4 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 EME68964.1 - 4.3e-10 39.6 0.0 4.8e-10 39.4 0.0 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DUF86 PF01934.17 EME68965.1 - 3.2e-20 72.2 0.0 4.2e-20 71.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF86 DUF3818 PF12825.7 EME68965.1 - 0.077 12.0 0.0 0.083 11.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function in PX-proteins (DUF3818) NTase_sub_bind PF08780.11 EME68965.1 - 0.17 11.8 0.0 0.26 11.3 0.0 1.3 1 0 0 1 1 1 0 Nucleotidyltransferase substrate binding protein like Aldedh PF00171.22 EME68966.1 - 7.3e-155 516.0 2.2 8.2e-155 515.8 2.2 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family DUF1487 PF07368.11 EME68966.1 - 6.9e-05 22.4 0.0 0.00015 21.3 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1487) Wtap PF17098.5 EME68966.1 - 0.017 15.0 0.1 0.044 13.7 0.1 1.6 2 0 0 2 2 2 0 WTAP/Mum2p family AMP-binding PF00501.28 EME68967.1 - 4.3e-10 38.8 0.0 6.6e-10 38.1 0.0 1.2 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C_2 PF14535.6 EME68967.1 - 0.0023 18.2 0.0 0.0047 17.2 0.0 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ABC_tran PF00005.27 EME68968.1 - 1.9e-26 93.2 0.0 3.2e-26 92.5 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 EME68968.1 - 9.3e-12 45.4 0.2 3.5e-06 27.0 0.1 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 EME68968.1 - 1.1e-05 26.1 0.0 1.7e-05 25.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 EME68968.1 - 0.00011 21.7 0.1 0.00059 19.3 0.1 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 EME68968.1 - 0.00046 19.9 0.4 0.00086 19.0 0.4 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_27 PF13514.6 EME68968.1 - 0.00097 18.8 0.0 0.002 17.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain Rad17 PF03215.15 EME68968.1 - 0.0051 16.8 0.0 0.01 15.8 0.0 1.4 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_15 PF13175.6 EME68968.1 - 0.0068 16.2 0.0 0.0068 16.2 0.0 1.2 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 EME68968.1 - 0.008 15.9 0.7 0.023 14.4 0.7 1.9 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 EME68968.1 - 0.023 15.2 0.1 0.28 11.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 EME68968.1 - 0.064 13.2 0.3 0.11 12.4 0.3 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_25 PF13481.6 EME68968.1 - 0.067 12.8 0.0 0.47 10.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 EME68968.1 - 0.083 13.2 0.3 0.31 11.3 0.3 2.0 1 1 0 1 1 1 0 AAA domain MukB PF04310.12 EME68968.1 - 0.097 12.5 0.0 0.16 11.8 0.0 1.3 1 0 0 1 1 1 0 MukB N-terminal AAA_16 PF13191.6 EME68968.1 - 0.14 12.5 0.0 0.21 12.0 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain BCA_ABC_TP_C PF12399.8 EME68968.1 - 0.23 11.4 0.9 0.65 10.0 0.0 2.3 3 0 0 3 3 3 0 Branched-chain amino acid ATP-binding cassette transporter Peripla_BP_6 PF13458.6 EME68969.1 - 1.7e-68 231.8 6.8 2e-68 231.6 6.8 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 EME68969.1 - 1.9e-05 23.8 0.3 0.00024 20.2 0.1 2.4 2 1 0 2 2 2 1 Periplasmic binding protein domain BPD_transp_2 PF02653.16 EME68970.1 - 4.9e-39 134.1 38.5 6.7e-39 133.7 38.5 1.2 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 EME68971.1 - 7.9e-35 120.3 44.2 9.3e-35 120.1 44.2 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component HupE_UreJ PF04955.12 EME68971.1 - 0.34 10.3 20.2 0.12 11.8 5.6 2.6 1 1 1 2 2 2 0 HupE / UreJ protein AMP-binding PF00501.28 EME68972.1 - 3.3e-71 240.1 0.0 4.1e-71 239.8 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme ABC_tran PF00005.27 EME68973.1 - 2.5e-28 99.3 0.0 3.3e-28 98.9 0.0 1.1 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.8 EME68973.1 - 1.2e-09 37.9 0.0 2.2e-09 37.0 0.0 1.5 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_23 PF13476.6 EME68973.1 - 4.8e-05 24.0 0.1 7.3e-05 23.4 0.1 1.3 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 EME68973.1 - 0.0074 15.7 0.8 0.073 12.5 0.2 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 EME68973.1 - 0.0083 16.0 0.0 0.17 11.7 0.0 2.1 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA PF00004.29 EME68973.1 - 0.0085 16.5 0.1 0.34 11.3 0.1 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 EME68973.1 - 0.01 15.6 0.1 0.014 15.1 0.1 1.4 1 1 0 1 1 1 0 AAA domain AAA_27 PF13514.6 EME68973.1 - 0.023 14.3 0.0 0.035 13.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 EME68973.1 - 0.023 14.6 0.1 0.073 13.0 0.0 1.7 2 0 0 2 2 2 0 RsgA GTPase AAA_29 PF13555.6 EME68973.1 - 0.035 13.8 0.1 0.074 12.8 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.6 EME68973.1 - 0.064 13.6 0.0 0.079 13.3 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_15 PF13175.6 EME68973.1 - 0.14 11.8 0.1 0.25 11.0 0.1 1.4 2 0 0 2 2 2 0 AAA ATPase domain NAD_binding_2 PF03446.15 EME68974.1 - 2.6e-49 167.4 7.5 2.6e-49 167.4 7.5 1.6 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.6 EME68974.1 - 2.3e-40 137.6 0.7 2.3e-40 137.6 0.7 2.2 2 0 0 2 2 2 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase F420_oxidored PF03807.17 EME68974.1 - 5.4e-09 36.5 1.8 8.5e-09 35.9 0.4 2.0 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.18 EME68974.1 - 0.0004 20.3 1.0 0.00083 19.3 1.0 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 EME68974.1 - 0.001 18.4 0.3 0.0015 17.9 0.3 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 EME68974.1 - 0.011 16.0 0.3 0.019 15.2 0.3 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain UDPG_MGDP_dh_N PF03721.14 EME68974.1 - 0.044 13.4 0.0 0.13 11.9 0.0 1.7 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TrkA_N PF02254.18 EME68974.1 - 0.072 13.4 0.0 0.13 12.5 0.0 1.4 1 0 0 1 1 1 0 TrkA-N domain Acyl-CoA_dh_1 PF00441.24 EME68975.1 - 7.1e-49 165.9 2.3 1e-48 165.3 2.3 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 EME68975.1 - 1.5e-32 112.6 0.0 3e-32 111.6 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 EME68975.1 - 1.1e-26 92.8 0.0 2.5e-26 91.7 0.0 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 EME68975.1 - 1.2e-24 87.1 1.4 1.2e-24 87.1 1.4 1.6 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain FCD PF07729.12 EME68976.1 - 5.3e-29 101.2 5.3 5.3e-29 101.2 5.3 2.0 2 0 0 2 2 2 1 FCD domain GntR PF00392.21 EME68976.1 - 8.5e-17 60.6 0.7 1.7e-16 59.6 0.7 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family PCI PF01399.27 EME68976.1 - 0.15 12.6 0.0 0.45 11.0 0.0 1.7 1 0 0 1 1 1 0 PCI domain AMP-binding PF00501.28 EME68977.1 - 1.8e-102 343.1 0.0 2.3e-102 342.8 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 EME68977.1 - 4.2e-14 53.3 1.1 8.4e-14 52.3 1.1 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ECH_2 PF16113.5 EME68978.1 - 4.6e-125 417.5 0.0 5.5e-125 417.3 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_1 PF00378.20 EME68978.1 - 4.2e-29 101.6 0.0 5.9e-29 101.1 0.0 1.2 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase SnoaL_2 PF12680.7 EME68978.1 - 0.042 14.5 0.5 14 6.4 0.1 2.8 2 1 0 2 2 2 0 SnoaL-like domain COG4 PF08318.12 EME68978.1 - 0.17 10.9 0.0 0.27 10.3 0.0 1.3 1 0 0 1 1 1 0 COG4 transport protein adh_short PF00106.25 EME68979.1 - 3.8e-43 147.2 2.3 4.6e-43 147.0 2.3 1.0 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 EME68979.1 - 2.3e-41 141.9 2.8 2.9e-41 141.6 2.8 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 EME68979.1 - 9.1e-08 32.2 2.6 2.4e-07 30.9 2.6 1.7 1 1 0 1 1 1 1 KR domain Epimerase PF01370.21 EME68979.1 - 0.00089 18.8 0.5 0.0016 17.9 0.5 1.5 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Sacchrp_dh_NADP PF03435.18 EME68979.1 - 0.0013 19.0 0.7 0.0042 17.3 0.6 1.8 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain 3Beta_HSD PF01073.19 EME68979.1 - 0.011 14.8 0.1 0.016 14.2 0.1 1.4 1 1 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family TrkA_N PF02254.18 EME68979.1 - 0.015 15.6 0.3 0.031 14.5 0.3 1.6 1 0 0 1 1 1 0 TrkA-N domain 3HCDH_N PF02737.18 EME68979.1 - 0.02 14.8 1.1 0.028 14.3 1.1 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 EME68979.1 - 0.099 12.0 0.2 0.26 10.6 0.2 1.7 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 EME68979.1 - 0.11 13.0 0.2 1.1 9.7 0.7 2.1 2 1 0 2 2 2 0 Putative NAD(P)-binding AdoHcyase_NAD PF00670.21 EME68979.1 - 0.23 11.5 1.1 0.38 10.8 1.1 1.4 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Rop-like PF05082.13 EME68981.1 - 5e-27 93.5 1.0 5.9e-27 93.3 1.0 1.0 1 0 0 1 1 1 1 Rop-like LPP PF04728.13 EME68981.1 - 0.09 13.2 2.0 0.15 12.4 0.6 1.8 2 0 0 2 2 2 0 Lipoprotein leucine-zipper BAGE PF08180.11 EME68981.1 - 0.32 11.1 7.0 9.1 6.5 3.7 3.0 2 1 0 2 2 2 0 B melanoma antigen family Asp_Glu_race PF01177.22 EME68982.1 - 5.2e-26 91.9 0.0 6.5e-26 91.6 0.0 1.1 1 0 0 1 1 1 1 Asp/Glu/Hydantoin racemase FIST PF08495.10 EME68982.1 - 0.013 15.6 0.1 0.03 14.3 0.1 1.6 1 1 1 2 2 2 0 FIST N domain cNMP_binding PF00027.29 EME68983.1 - 4.7e-14 52.2 0.0 7.9e-14 51.5 0.0 1.5 1 0 0 1 1 1 1 Cyclic nucleotide-binding domain HTH_Crp_2 PF13545.6 EME68983.1 - 4.9e-11 42.4 0.0 1.2e-10 41.2 0.0 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_Crp_2 PF13545.6 EME68984.1 - 4.8e-18 64.9 0.3 9.5e-18 64.0 0.3 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain cNMP_binding PF00027.29 EME68984.1 - 1.1e-12 47.9 0.0 1.7e-12 47.2 0.0 1.4 1 0 0 1 1 1 1 Cyclic nucleotide-binding domain MarR_2 PF12802.7 EME68984.1 - 0.012 15.5 1.6 0.021 14.7 0.4 2.2 2 1 0 2 2 2 0 MarR family Crp PF00325.20 EME68984.1 - 0.03 14.0 0.0 0.061 13.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, crp family HTH_24 PF13412.6 EME68984.1 - 0.15 11.6 0.0 0.45 10.1 0.0 1.9 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF2249 PF10006.9 EME68985.1 - 1e-28 99.0 0.6 3e-13 49.4 0.0 2.2 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2249) TusA PF01206.17 EME68985.1 - 0.0074 16.1 0.0 0.012 15.4 0.0 1.5 1 0 0 1 1 1 1 Sulfurtransferase TusA Hemerythrin PF01814.23 EME68987.1 - 1.1e-14 55.2 11.8 4.2e-11 43.6 5.1 1.5 1 1 1 2 2 2 2 Hemerythrin HHE cation binding domain DUF1708 PF08101.11 EME68987.1 - 0.082 12.1 0.0 0.098 11.8 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1708) DUF1529 PF07485.11 EME68988.1 - 0.076 12.9 0.0 0.086 12.8 0.0 1.2 1 0 0 1 1 1 0 Domain of Unknown Function (DUF1259) Formyl_trans_N PF00551.19 EME68989.1 - 3.6e-36 124.6 0.2 4.5e-36 124.3 0.2 1.1 1 0 0 1 1 1 1 Formyl transferase ACT PF01842.25 EME68989.1 - 0.00014 21.6 0.0 0.0003 20.5 0.0 1.6 1 0 0 1 1 1 1 ACT domain ACT_6 PF13740.6 EME68989.1 - 0.018 15.0 0.0 0.045 13.7 0.0 1.7 1 0 0 1 1 1 0 ACT domain FecR PF04773.13 EME68990.1 - 7.1e-12 45.8 0.0 1.2e-11 45.1 0.0 1.3 1 0 0 1 1 1 1 FecR protein DUF423 PF04241.15 EME68991.1 - 1.9e-18 66.4 2.4 3.7e-18 65.5 2.4 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF423) Response_reg PF00072.24 EME68992.1 - 4e-27 94.6 0.3 4.5e-27 94.4 0.3 1.0 1 0 0 1 1 1 1 Response regulator receiver domain Ribosomal_L33 PF00471.20 EME68993.1 - 6.3e-15 55.4 0.1 7e-15 55.2 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L33 GGDEF PF00990.21 EME68994.1 - 3.6e-32 111.4 0.0 3.5e-31 108.1 0.0 2.0 1 1 0 1 1 1 1 Diguanylate cyclase, GGDEF domain Glyco_tranf_2_3 PF13641.6 EME68995.1 - 0.19 11.6 0.0 0.22 11.4 0.0 1.1 1 0 0 1 1 1 0 Glycosyltransferase like family 2 Aminotran_3 PF00202.21 EME68996.1 - 6.3e-96 321.5 0.0 7.6e-96 321.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 EME68997.1 - 3.6e-79 266.6 0.0 4.2e-79 266.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 EME68997.1 - 4.6e-05 22.1 0.0 7.6e-05 21.4 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 EME68997.1 - 0.00032 19.8 0.0 0.00066 18.7 0.0 1.5 2 0 0 2 2 2 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 EME68997.1 - 0.017 14.4 0.1 0.025 13.8 0.1 1.3 1 0 0 1 1 1 0 Beta-eliminating lyase ScsC_N PF18312.1 EME68997.1 - 0.24 11.2 0.4 17 5.3 0.0 2.5 2 0 0 2 2 2 0 Copper resistance protein ScsC N-terminal domain cNMP_binding PF00027.29 EME68998.1 - 2.5e-19 69.1 0.0 3.1e-09 36.8 0.0 3.0 3 0 0 3 3 3 2 Cyclic nucleotide-binding domain Hemerythrin PF01814.23 EME68998.1 - 5.2e-10 40.0 1.3 1e-09 39.1 1.3 1.5 1 0 0 1 1 1 1 Hemerythrin HHE cation binding domain Lactamase_B PF00753.27 EME68998.1 - 2.3e-08 34.3 0.1 5.6e-08 33.0 0.1 1.6 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 EME68998.1 - 7.5e-08 32.1 0.0 2.1e-07 30.7 0.0 1.7 1 0 0 1 1 1 1 Beta-lactamase superfamily domain tify PF06200.14 EME68998.1 - 3.1 7.2 4.2 49 3.4 0.0 3.9 5 0 0 5 5 5 0 tify domain FTR1 PF03239.14 EME68999.1 - 1.5e-28 99.9 19.0 2e-28 99.5 19.0 1.1 1 0 0 1 1 1 1 Iron permease FTR1 family TPP_enzyme_C PF02775.21 EME69000.1 - 5.1e-19 68.6 0.0 7.6e-19 68.0 0.0 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Fer4_6 PF12837.7 EME69000.1 - 4.1e-16 58.3 28.3 2.4e-05 24.2 0.8 4.8 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_11 PF13247.6 EME69000.1 - 6.1e-12 45.5 9.5 6.1e-12 45.5 9.5 2.1 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 EME69000.1 - 3.3e-10 39.9 25.5 5.4e-05 23.2 9.0 3.7 3 0 0 3 3 3 3 4Fe-4S dicluster domain Fer4_7 PF12838.7 EME69000.1 - 1.7e-08 34.9 30.1 0.00033 21.2 9.9 3.7 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.6 EME69000.1 - 1.9e-08 34.3 30.7 4.1e-05 23.7 8.5 3.7 1 1 4 5 5 5 5 4Fe-4S dicluster domain Fer4_2 PF12797.7 EME69000.1 - 3.5e-08 33.1 32.0 0.0078 16.3 2.6 4.8 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_21 PF14697.6 EME69000.1 - 0.00049 20.2 29.3 0.002 18.2 7.9 2.9 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.27 EME69000.1 - 0.0016 18.2 41.7 0.14 12.0 3.6 5.5 5 1 0 5 5 5 4 4Fe-4S binding domain Fer4_16 PF13484.6 EME69000.1 - 0.0023 18.8 28.2 0.048 14.6 0.6 4.7 3 1 1 4 4 4 2 4Fe-4S double cluster binding domain Fer4_3 PF12798.7 EME69000.1 - 0.021 15.7 5.0 0.021 15.7 5.0 5.4 5 0 0 5 5 5 0 4Fe-4S binding domain Fer4_17 PF13534.6 EME69000.1 - 0.98 10.0 30.9 3.9 8.1 1.3 4.9 3 2 1 4 4 4 0 4Fe-4S dicluster domain Fer4_19 PF06902.11 EME69000.1 - 1.3 9.2 9.6 23 5.2 0.1 3.5 2 1 0 2 2 2 0 Divergent 4Fe-4S mono-cluster Pyr_redox_2 PF07992.14 EME69001.1 - 5.6e-53 180.1 0.8 7.6e-53 179.7 0.8 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 EME69001.1 - 3.7e-16 59.4 0.2 9.1e-16 58.2 0.2 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 EME69001.1 - 2.4e-07 30.3 0.0 8.1e-07 28.6 0.0 1.9 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.24 EME69001.1 - 6.3e-06 25.7 1.8 0.025 13.9 0.1 2.2 2 0 0 2 2 2 2 Flavin containing amine oxidoreductase DAO PF01266.24 EME69001.1 - 1.2e-05 25.1 2.8 0.019 14.6 0.3 3.2 2 1 1 3 3 3 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 EME69001.1 - 1.7e-05 24.1 4.3 0.0061 15.7 1.3 2.3 2 0 0 2 2 2 2 FAD binding domain HI0933_like PF03486.14 EME69001.1 - 1.9e-05 23.6 0.8 0.024 13.3 0.2 2.7 3 0 0 3 3 3 2 HI0933-like protein NAD_binding_8 PF13450.6 EME69001.1 - 5.7e-05 23.3 0.1 0.00013 22.1 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain 3HCDH_N PF02737.18 EME69001.1 - 0.0017 18.3 0.1 0.0027 17.6 0.1 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 EME69001.1 - 0.0031 16.9 0.3 0.0063 15.8 0.3 1.5 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Rubredoxin_C PF18267.1 EME69001.1 - 0.0051 16.7 0.0 0.015 15.2 0.0 1.9 2 0 0 2 2 1 1 Rubredoxin NAD+ reductase C-terminal domain FAD_binding_3 PF01494.19 EME69001.1 - 0.0069 15.7 0.1 0.01 15.1 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain Lycopene_cycl PF05834.12 EME69001.1 - 0.011 14.9 2.2 0.4 9.7 0.4 2.5 1 1 0 2 2 2 0 Lycopene cyclase protein Thi4 PF01946.17 EME69001.1 - 0.013 14.8 0.2 0.024 13.9 0.2 1.4 1 0 0 1 1 1 0 Thi4 family K_oxygenase PF13434.6 EME69001.1 - 0.018 14.2 0.0 0.035 13.2 0.0 1.4 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_7 PF13241.6 EME69001.1 - 0.029 14.8 0.2 0.063 13.7 0.2 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding TrkA_N PF02254.18 EME69001.1 - 0.063 13.5 0.1 0.36 11.1 0.0 2.2 2 0 0 2 2 2 0 TrkA-N domain GIDA PF01134.22 EME69001.1 - 0.1 11.7 1.7 0.33 10.0 1.1 2.0 1 1 1 2 2 2 0 Glucose inhibited division protein A AdoHcyase_NAD PF00670.21 EME69001.1 - 0.12 12.4 0.1 0.28 11.2 0.1 1.6 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_binding_9 PF13454.6 EME69001.1 - 0.13 12.3 4.5 4.3 7.3 0.1 3.2 2 1 1 3 3 3 0 FAD-NAD(P)-binding UDPG_MGDP_dh_N PF03721.14 EME69001.1 - 0.14 11.7 0.0 0.3 10.6 0.0 1.5 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain POR_N PF01855.19 EME69002.1 - 1.3e-44 152.6 0.1 2.7e-44 151.6 0.0 1.5 2 0 0 2 2 2 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 EME69002.1 - 1.2e-29 102.6 0.1 2e-29 101.9 0.1 1.4 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 EME69002.1 - 1.4e-05 24.9 0.0 3e-05 23.9 0.0 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain Fer4 PF00037.27 EME69003.1 - 6.4e-12 44.8 19.7 2.2e-08 33.6 1.8 2.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.6 EME69003.1 - 1e-08 35.2 9.4 1e-08 35.2 9.4 1.7 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 EME69003.1 - 5e-08 32.6 11.1 7.2e-05 22.7 1.0 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 EME69003.1 - 1.8e-07 30.9 15.9 9.8e-05 22.3 2.4 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 EME69003.1 - 2.1e-07 31.7 11.6 8.2e-05 23.5 2.1 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 EME69003.1 - 4.2e-05 23.6 15.1 9.5e-05 22.5 14.8 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 EME69003.1 - 4.5e-05 24.0 16.4 0.00095 19.7 2.0 2.3 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 EME69003.1 - 7.5e-05 22.8 16.3 0.0012 18.9 15.8 2.4 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 EME69003.1 - 0.0026 18.5 13.2 0.16 12.7 0.8 2.5 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_17 PF13534.6 EME69003.1 - 0.0043 17.6 11.8 0.016 15.7 0.5 2.5 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_13 PF13370.6 EME69003.1 - 0.0057 17.2 14.9 0.058 13.9 5.6 2.5 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_4 PF12800.7 EME69003.1 - 0.11 13.1 13.9 2.1 9.0 0.8 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_22 PF17179.4 EME69003.1 - 0.39 11.6 15.2 1 10.2 4.0 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 EME69003.1 - 0.84 10.1 17.3 1.2 9.7 3.1 2.7 1 1 3 4 4 2 0 4Fe-4S dicluster domain POR PF01558.18 EME69004.1 - 4.9e-33 114.7 0.8 5.8e-33 114.4 0.8 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase ABC_tran PF00005.27 EME69006.1 - 6.4e-30 104.5 0.0 8.3e-30 104.1 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 EME69006.1 - 7.9e-16 58.7 0.6 3e-07 30.5 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 EME69006.1 - 4.9e-05 23.9 0.1 7e-05 23.4 0.1 1.2 1 0 0 1 1 1 1 AAA domain MCM PF00493.23 EME69006.1 - 0.0015 17.7 0.0 0.022 13.9 0.0 2.0 2 0 0 2 2 2 1 MCM P-loop domain SMC_N PF02463.19 EME69006.1 - 0.0028 17.1 0.3 0.1 12.0 0.3 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 EME69006.1 - 0.0048 17.3 0.2 0.0086 16.5 0.2 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.6 EME69006.1 - 0.007 16.0 0.4 0.026 14.1 0.4 2.0 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 EME69006.1 - 0.0085 15.8 0.0 0.016 14.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 EME69006.1 - 0.0093 15.7 0.5 0.05 13.3 0.3 1.9 2 0 0 2 2 2 1 AAA domain DUF3584 PF12128.8 EME69006.1 - 0.012 13.2 0.1 0.016 12.7 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Zeta_toxin PF06414.12 EME69006.1 - 0.013 14.8 0.1 0.041 13.1 0.1 1.7 2 0 0 2 2 2 0 Zeta toxin BCA_ABC_TP_C PF12399.8 EME69006.1 - 0.024 14.5 0.0 0.14 12.1 0.0 2.1 2 0 0 2 2 2 0 Branched-chain amino acid ATP-binding cassette transporter AAA_15 PF13175.6 EME69006.1 - 0.025 14.3 0.0 0.051 13.3 0.0 1.4 2 0 0 2 2 2 0 AAA ATPase domain AAA_27 PF13514.6 EME69006.1 - 0.027 14.1 0.0 0.056 13.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 EME69006.1 - 0.032 14.2 0.2 0.05 13.5 0.2 1.3 1 0 0 1 1 1 0 RsgA GTPase TsaE PF02367.17 EME69006.1 - 0.036 14.0 0.4 0.063 13.3 0.4 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_22 PF13401.6 EME69006.1 - 0.055 13.7 0.2 1.1 9.5 0.2 2.1 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.22 EME69006.1 - 0.066 12.8 0.3 0.12 12.0 0.3 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_28 PF13521.6 EME69006.1 - 0.069 13.4 0.3 0.19 12.0 0.3 1.8 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 EME69006.1 - 0.071 13.0 0.1 0.13 12.2 0.1 1.4 1 0 0 1 1 1 0 NACHT domain MMR_HSR1 PF01926.23 EME69006.1 - 0.091 12.9 0.1 0.19 11.8 0.1 1.5 2 0 0 2 2 1 0 50S ribosome-binding GTPase AAA_13 PF13166.6 EME69006.1 - 0.13 10.9 0.0 0.16 10.5 0.0 1.1 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 EME69006.1 - 0.14 12.3 0.5 0.31 11.2 0.3 1.6 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 EME69006.1 - 0.26 10.7 1.3 0.44 9.9 0.3 1.7 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI ABC_tran PF00005.27 EME69007.1 - 5.4e-25 88.5 0.0 8e-25 87.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.8 EME69007.1 - 4.1e-12 45.7 0.2 6.6e-12 45.1 0.2 1.4 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_21 PF13304.6 EME69007.1 - 6.6e-07 29.4 0.6 0.0029 17.5 0.5 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 EME69007.1 - 3.5e-05 24.4 0.1 5.2e-05 23.8 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 EME69007.1 - 0.00029 20.6 0.1 0.0017 18.1 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 EME69007.1 - 0.00034 20.3 0.1 0.00082 19.1 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 EME69007.1 - 0.0018 17.8 0.1 0.065 12.7 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_27 PF13514.6 EME69007.1 - 0.0035 17.0 0.1 0.0053 16.4 0.1 1.2 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 EME69007.1 - 0.0044 16.9 0.1 0.015 15.2 0.0 1.8 2 0 0 2 2 2 1 RsgA GTPase MMR_HSR1 PF01926.23 EME69007.1 - 0.037 14.1 0.2 0.22 11.6 0.1 2.0 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_22 PF13401.6 EME69007.1 - 0.044 14.1 0.5 0.87 9.9 0.1 2.7 2 1 1 3 3 3 0 AAA domain AAA_33 PF13671.6 EME69007.1 - 0.17 12.1 0.0 0.49 10.5 0.0 1.9 1 1 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 EME69007.1 - 0.22 11.4 0.1 0.7 9.8 0.0 1.7 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_13 PF13166.6 EME69007.1 - 0.27 9.8 0.0 0.34 9.5 0.0 1.1 1 0 0 1 1 1 0 AAA domain DUF3584 PF12128.8 EME69007.1 - 0.37 8.3 0.1 0.49 7.8 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) BPD_transp_2 PF02653.16 EME69008.1 - 3.8e-37 127.9 36.5 3.8e-37 127.9 36.5 1.5 1 1 1 2 2 2 1 Branched-chain amino acid transport system / permease component ATP19 PF11022.8 EME69008.1 - 0.16 12.4 0.2 0.75 10.2 0.2 2.2 1 0 0 1 1 1 0 ATP synthase subunit K BPD_transp_2 PF02653.16 EME69009.1 - 2.2e-39 135.2 45.3 2.6e-39 135.0 45.3 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Peripla_BP_6 PF13458.6 EME69010.1 - 1.8e-67 228.4 0.7 2.1e-67 228.2 0.7 1.0 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 EME69010.1 - 3.4e-21 75.6 0.0 1.9e-20 73.2 0.0 2.1 1 1 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.28 EME69010.1 - 7.8e-14 51.5 0.0 1.1e-13 51.0 0.0 1.2 1 0 0 1 1 1 1 Receptor family ligand binding region Ribosomal_S11 PF00411.19 EME69010.1 - 0.11 13.0 0.1 0.31 11.5 0.0 1.8 2 0 0 2 2 2 0 Ribosomal protein S11 EAL PF00563.20 EME69011.1 - 8.1e-57 192.5 0.0 1.3e-56 191.8 0.0 1.3 1 0 0 1 1 1 1 EAL domain PAS_4 PF08448.10 EME69011.1 - 0.0075 16.5 0.0 0.015 15.5 0.0 1.4 1 0 0 1 1 1 1 PAS fold PAS PF00989.25 EME69011.1 - 0.012 15.5 0.0 0.026 14.5 0.0 1.5 1 0 0 1 1 1 0 PAS fold Amidase PF01425.21 EME69012.1 - 3.8e-65 220.6 0.8 1.3e-50 172.7 2.9 2.0 1 1 0 2 2 2 2 Amidase DUF3040 PF11239.8 EME69012.1 - 0.21 11.9 3.2 5.2 7.4 0.1 3.5 2 1 1 3 3 3 0 Protein of unknown function (DUF3040) Radical_SAM PF04055.21 EME69013.1 - 4e-14 53.3 0.0 5.5e-14 52.9 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Pyr_redox_2 PF07992.14 EME69014.1 - 1.2e-67 228.3 4.3 1.6e-67 227.8 4.3 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 EME69014.1 - 2.6e-33 114.5 0.1 5.1e-33 113.6 0.1 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 EME69014.1 - 5.2e-22 78.2 10.2 1e-21 77.2 0.7 4.0 4 0 0 4 4 4 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 EME69014.1 - 4.7e-16 58.9 0.6 5e-14 52.3 0.0 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 EME69014.1 - 7.5e-06 24.9 4.4 0.0073 15.0 0.0 3.0 3 0 0 3 3 3 2 HI0933-like protein K_oxygenase PF13434.6 EME69014.1 - 5.9e-05 22.4 0.3 0.0051 16.0 0.0 2.1 1 1 1 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) FAD_oxidored PF12831.7 EME69014.1 - 0.00016 21.2 3.5 0.0012 18.3 2.3 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase Amino_oxidase PF01593.24 EME69014.1 - 0.00067 19.1 0.4 0.0029 17.0 0.0 1.9 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase NAD_binding_9 PF13454.6 EME69014.1 - 0.0022 18.0 0.4 0.008 16.2 0.1 2.1 2 0 0 2 2 2 1 FAD-NAD(P)-binding Thi4 PF01946.17 EME69014.1 - 0.003 16.8 0.9 0.008 15.4 0.2 2.0 2 0 0 2 2 2 1 Thi4 family DAO PF01266.24 EME69014.1 - 0.024 14.2 0.1 0.024 14.2 0.1 3.8 3 1 0 4 4 4 0 FAD dependent oxidoreductase XdhC_C PF13478.6 EME69014.1 - 0.14 12.6 0.4 22 5.5 0.0 2.5 2 0 0 2 2 2 0 XdhC Rossmann domain FAD_binding_2 PF00890.24 EME69014.1 - 0.22 10.5 10.3 1.2 8.2 10.3 2.5 1 1 0 1 1 1 0 FAD binding domain GIDA PF01134.22 EME69014.1 - 4.1 6.4 12.9 0.45 9.5 3.3 3.0 2 2 0 2 2 2 0 Glucose inhibited division protein A AlaDh_PNT_C PF01262.21 EME69014.1 - 4.8 6.4 9.4 8.5 5.6 0.8 3.6 3 1 0 3 3 3 0 Alanine dehydrogenase/PNT, C-terminal domain MFS_1 PF07690.16 EME69015.1 - 1.2e-43 149.4 87.8 2.5e-31 108.9 45.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_4 PF06779.14 EME69015.1 - 4.6e-35 121.6 47.3 8.8e-35 120.7 47.3 1.4 1 1 0 1 1 1 1 Uncharacterised MFS-type transporter YbfB MFS_1_like PF12832.7 EME69015.1 - 0.00095 18.1 15.5 0.0061 15.5 3.3 3.4 2 1 0 2 2 2 2 MFS_1 like family LacY_symp PF01306.19 EME69015.1 - 0.002 17.0 12.2 0.083 11.6 8.0 2.2 2 0 0 2 2 2 2 LacY proton/sugar symporter HTH_42 PF06224.12 EME69015.1 - 1.6 8.2 4.0 0.59 9.6 0.3 1.9 2 0 0 2 2 2 0 Winged helix DNA-binding domain Fe-S_assembly PF04384.13 EME69016.1 - 2.2e-32 111.5 1.3 2.4e-32 111.4 1.3 1.0 1 0 0 1 1 1 1 Iron-sulphur cluster assembly Fer2 PF00111.27 EME69017.1 - 1.3e-15 57.1 0.2 1.8e-15 56.6 0.2 1.2 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain MCR PF18509.1 EME69017.1 - 0.13 11.8 0.2 0.24 11.0 0.2 1.4 1 0 0 1 1 1 0 Magnetochrome domain NAD-GH PF10712.9 EME69018.1 - 3.1e-100 336.3 44.4 4.1e-100 335.9 44.4 1.1 1 0 0 1 1 1 1 NAD-specific glutamate dehydrogenase HSCB_C PF07743.13 EME69019.1 - 3e-14 53.3 4.3 3e-14 53.3 4.3 2.1 2 0 0 2 2 2 1 HSCB C-terminal oligomerisation domain DnaJ PF00226.31 EME69019.1 - 8.8e-08 32.2 0.2 1.7e-07 31.3 0.2 1.4 1 0 0 1 1 1 1 DnaJ domain zf-ribbon_3 PF13248.6 EME69019.1 - 0.0019 17.5 1.0 0.0019 17.5 1.0 1.8 2 0 0 2 2 2 1 zinc-ribbon domain DZR PF12773.7 EME69019.1 - 0.012 15.6 0.8 0.036 14.1 0.8 1.7 1 0 0 1 1 1 0 Double zinc ribbon HscB_4_cys PF18256.1 EME69019.1 - 0.098 12.5 4.5 0.29 11.0 4.5 1.8 1 1 0 1 1 1 0 Co-chaperone HscB tetracysteine metal binding motif Cytochrom_C552 PF02335.15 EME69019.1 - 0.2 10.6 3.0 3 6.7 0.1 2.1 2 0 0 2 2 2 0 Cytochrome c552 Fe-S_biosyn PF01521.20 EME69020.1 - 4e-23 81.7 0.0 4.4e-23 81.6 0.0 1.0 1 0 0 1 1 1 1 Iron-sulphur cluster biosynthesis NifU_N PF01592.16 EME69021.1 - 3.3e-57 192.2 0.2 3.7e-57 192.0 0.2 1.0 1 0 0 1 1 1 1 NifU-like N terminal domain Aminotran_5 PF00266.19 EME69022.1 - 4.7e-86 289.1 0.0 5.7e-86 288.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 EME69022.1 - 2.1e-08 33.8 0.1 2.4e-08 33.6 0.1 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 EME69022.1 - 8.4e-08 31.9 0.5 1.3e-07 31.3 0.5 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Pyridoxal_deC PF00282.19 EME69022.1 - 0.054 12.2 0.0 0.078 11.7 0.0 1.2 1 0 0 1 1 1 0 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.19 EME69023.1 - 1.8e-62 211.4 0.0 3.1e-62 210.7 0.0 1.4 2 0 0 2 2 2 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 EME69023.1 - 1.6e-05 24.4 0.5 4.4e-05 22.9 0.5 1.7 1 1 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 EME69023.1 - 0.0045 16.4 0.8 0.0077 15.6 0.8 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Pyridoxal_deC PF00282.19 EME69023.1 - 0.056 12.1 0.0 0.093 11.4 0.0 1.3 1 0 0 1 1 1 0 Pyridoxal-dependent decarboxylase conserved domain Rrf2 PF02082.20 EME69024.1 - 1.6e-27 95.7 0.1 2.4e-27 95.1 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator HrcA_DNA-bdg PF03444.15 EME69024.1 - 0.00046 19.8 0.0 0.00077 19.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding MarR_2 PF12802.7 EME69024.1 - 0.0055 16.6 0.0 0.011 15.6 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_47 PF16221.5 EME69024.1 - 0.065 12.8 0.0 0.12 12.0 0.0 1.5 1 0 0 1 1 1 0 winged helix-turn-helix HTH_AraC PF00165.23 EME69024.1 - 0.16 12.1 0.0 0.83 9.8 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix proteins, AraC family Hexapep PF00132.24 EME69025.1 - 1.1e-11 43.9 5.8 1.1e-06 28.2 0.6 2.5 2 0 0 2 2 2 2 Bacterial transferase hexapeptide (six repeats) SATase_N PF06426.14 EME69025.1 - 3.6e-05 24.1 0.0 6.2e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 Serine acetyltransferase, N-terminal Hexapep_2 PF14602.6 EME69025.1 - 0.0016 18.2 11.5 0.018 14.8 3.0 2.7 2 1 0 2 2 2 2 Hexapeptide repeat of succinyl-transferase Hydrolase_4 PF12146.8 EME69026.1 - 6.6e-12 45.2 0.4 1.5e-08 34.2 0.2 2.1 1 1 1 2 2 2 2 Serine aminopeptidase, S33 Peptidase_S9 PF00326.21 EME69026.1 - 1.9e-09 37.3 0.5 5e-05 22.9 0.0 2.2 1 1 1 2 2 2 2 Prolyl oligopeptidase family Peptidase_S15 PF02129.18 EME69026.1 - 2.2e-08 34.0 0.0 4.5e-08 33.0 0.0 1.5 1 1 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_6 PF12697.7 EME69026.1 - 1.3e-07 32.5 0.5 0.0001 23.0 0.2 2.1 1 1 1 2 2 2 2 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 EME69026.1 - 2.5e-07 30.6 0.5 5.3e-05 23.0 0.3 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold DLH PF01738.18 EME69026.1 - 8.5e-05 22.2 0.0 0.00014 21.5 0.0 1.3 1 0 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_5 PF12695.7 EME69026.1 - 0.0062 16.3 0.0 0.0093 15.7 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_2 PF02230.16 EME69026.1 - 0.046 13.5 0.0 0.087 12.6 0.0 1.3 1 1 0 1 1 1 0 Phospholipase/Carboxylesterase Esterase PF00756.20 EME69026.1 - 0.053 13.2 0.0 2.6 7.6 0.0 2.1 2 0 0 2 2 2 0 Putative esterase BAAT_C PF08840.11 EME69026.1 - 0.13 12.2 0.0 9.4 6.1 0.0 2.1 1 1 1 2 2 2 0 BAAT / Acyl-CoA thioester hydrolase C terminal DIM PF08194.12 EME69027.1 - 0.0062 16.7 0.8 0.0062 16.7 0.8 1.7 1 1 1 2 2 2 1 DIM protein AnmK PF03702.14 EME69028.1 - 3.9e-85 286.1 0.3 4.6e-85 285.9 0.3 1.0 1 0 0 1 1 1 1 Anhydro-N-acetylmuramic acid kinase tRNA-synt_1b PF00579.25 EME69029.1 - 3.1e-71 240.1 0.0 3.9e-71 239.8 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) S4 PF01479.25 EME69029.1 - 0.031 14.0 0.0 0.078 12.7 0.0 1.6 1 0 0 1 1 1 0 S4 domain Peptidase_U32 PF01136.19 EME69030.1 - 4.6e-27 94.7 0.0 6.2e-27 94.3 0.0 1.2 1 0 0 1 1 1 1 Peptidase family U32 FIST PF08495.10 EME69031.1 - 4e-30 105.1 0.9 2.9e-29 102.3 0.4 2.3 2 0 0 2 2 2 1 FIST N domain HATPase_c PF02518.26 EME69031.1 - 2.2e-18 66.8 0.1 8.1e-18 65.0 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIST_C PF10442.9 EME69031.1 - 2.9e-12 46.7 0.8 3.2e-08 33.6 0.0 3.1 3 0 0 3 3 3 2 FIST C domain Response_reg PF00072.24 EME69031.1 - 7.6e-12 45.4 0.1 2.7e-11 43.6 0.0 2.0 2 0 0 2 2 2 1 Response regulator receiver domain HisKA PF00512.25 EME69031.1 - 1.1e-10 41.4 2.3 1.1e-10 41.4 0.3 2.1 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.6 EME69031.1 - 0.0092 15.9 0.0 0.029 14.3 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain FleQ PF06490.11 EME69031.1 - 0.013 15.8 0.0 0.047 14.1 0.0 1.9 1 0 0 1 1 1 0 Flagellar regulatory protein FleQ LPP PF04728.13 EME69031.1 - 0.12 12.8 1.2 0.31 11.5 1.2 1.7 1 0 0 1 1 1 0 Lipoprotein leucine-zipper PEP-utilisers_N PF05524.13 EME69031.1 - 0.78 9.9 3.7 0.49 10.6 0.4 2.4 3 0 0 3 3 3 0 PEP-utilising enzyme, N-terminal Rubrerythrin PF02915.17 EME69032.1 - 7e-20 71.8 9.0 2.1e-18 67.0 9.0 2.1 1 1 0 1 1 1 1 Rubrerythrin DZR PF12773.7 EME69032.1 - 0.013 15.5 0.2 0.02 14.9 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon Ferritin PF00210.24 EME69032.1 - 0.053 13.5 1.4 0.064 13.2 1.4 1.4 1 1 0 1 1 1 0 Ferritin-like domain CT_C_D PF02682.16 EME69033.1 - 3.2e-68 229.4 0.0 3.8e-68 229.2 0.0 1.0 1 0 0 1 1 1 1 Carboxyltransferase domain, subdomain C and D CT_A_B PF02626.15 EME69034.1 - 2.7e-79 266.5 0.5 3.2e-79 266.3 0.5 1.1 1 0 0 1 1 1 1 Carboxyltransferase domain, subdomain A and B LamB_YcsF PF03746.16 EME69035.1 - 9.3e-97 323.4 0.3 1e-96 323.2 0.3 1.0 1 0 0 1 1 1 1 LamB/YcsF family PaaB PF06243.11 EME69035.1 - 2.8 8.3 3.5 23 5.3 0.4 3.0 3 0 0 3 3 3 0 Phenylacetic acid degradation B E1-E2_ATPase PF00122.20 EME69036.1 - 1e-33 116.4 1.6 2.3e-33 115.3 1.6 1.6 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.26 EME69036.1 - 2.2e-32 113.1 0.6 5.2e-32 111.8 0.6 1.7 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 EME69036.1 - 0.0021 17.8 0.4 0.0051 16.6 0.4 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 EME69036.1 - 0.021 15.2 1.3 0.18 12.2 0.2 3.1 3 1 0 3 3 3 0 haloacid dehalogenase-like hydrolase DUF1192 PF06698.11 EME69036.1 - 0.41 10.7 4.2 0.55 10.3 1.4 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1192) YtxH PF12732.7 EME69037.1 - 0.16 12.5 4.1 0.54 10.8 4.1 1.8 1 1 0 1 1 1 0 YtxH-like protein NDUF_B12 PF08122.12 EME69038.1 - 8.1 6.6 6.6 9.5 6.3 2.9 2.7 1 1 1 2 2 2 0 NADH-ubiquinone oxidoreductase B12 subunit family Med3 PF11593.8 EME69039.1 - 9 5.4 7.4 8.8 5.4 7.4 1.1 1 0 0 1 1 1 0 Mediator complex subunit 3 fungal HMA PF00403.26 EME69040.1 - 0.0028 18.1 0.0 0.0038 17.6 0.0 1.3 1 0 0 1 1 1 1 Heavy-metal-associated domain CT_C_D PF02682.16 EME69041.1 - 0.015 15.0 0.0 0.021 14.6 0.0 1.1 1 0 0 1 1 1 0 Carboxyltransferase domain, subdomain C and D HMA PF00403.26 EME69041.1 - 0.085 13.3 0.0 0.13 12.8 0.0 1.3 1 0 0 1 1 1 0 Heavy-metal-associated domain FUR PF01475.19 EME69042.1 - 2.6e-14 53.4 0.0 3.3e-14 53.1 0.0 1.1 1 0 0 1 1 1 1 Ferric uptake regulator family HTH_20 PF12840.7 EME69042.1 - 0.022 14.8 1.2 0.18 11.9 0.3 2.4 3 0 0 3 3 3 0 Helix-turn-helix domain SBF_like PF13593.6 EME69043.1 - 1.5e-95 320.2 12.1 1.6e-95 320.0 12.1 1.0 1 0 0 1 1 1 1 SBF-like CPA transporter family (DUF4137) SBF PF01758.16 EME69043.1 - 1.2e-10 41.4 8.6 1.2e-10 41.4 8.6 2.0 2 0 0 2 2 2 1 Sodium Bile acid symporter family HKR_ArcB_TM PF18415.1 EME69043.1 - 2.1 9.2 6.7 2.2 9.1 0.1 3.2 2 1 1 3 3 3 0 Histidine kinase receptor ArcB trans-membrane domain Arm-DNA-bind_3 PF13356.6 EME69045.1 - 4.3e-14 52.6 0.3 1.9e-13 50.6 0.2 2.1 2 0 0 2 2 2 1 Arm DNA-binding domain Phage_integrase PF00589.22 EME69045.1 - 8.8e-12 45.2 0.0 2.9e-11 43.5 0.0 1.8 2 1 0 2 2 2 1 Phage integrase family Phage_int_SAM_1 PF02899.17 EME69045.1 - 0.0033 17.7 0.1 0.011 16.0 0.1 2.0 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 EME69045.1 - 0.006 17.0 0.1 0.011 16.2 0.1 1.5 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain pPIWI_RE_Y PF18156.1 EME69045.1 - 0.059 13.8 0.4 1.8 9.0 0.0 2.3 2 0 0 2 2 2 0 pPIWI_RE three-gene island domain Y DUF1822 PF08852.11 EME69046.1 - 0.014 14.4 0.0 0.017 14.2 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1822) DUF1967 PF09269.11 EME69046.1 - 0.091 12.7 0.0 5.3 7.0 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1967) FAF PF11250.8 EME69046.1 - 0.11 12.8 0.0 0.24 11.7 0.0 1.6 1 1 0 1 1 1 0 Fantastic Four meristem regulator LPD26 PF18842.1 EME69046.1 - 0.19 11.7 0.2 4 7.5 0.1 2.1 2 0 0 2 2 2 0 Large polyvalent protein associated domain 26 ParE_toxin PF05016.15 EME69047.1 - 1.3e-19 70.6 0.0 1.4e-19 70.5 0.0 1.0 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE ATG22 PF11700.8 EME69049.1 - 5.2e-44 150.7 24.5 3.2e-39 134.9 7.5 3.1 1 1 2 3 3 3 3 Vacuole effluxer Atg22 like MFS_1 PF07690.16 EME69049.1 - 5e-22 78.3 48.6 1.2e-13 50.8 26.4 2.4 2 1 0 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 EME69049.1 - 0.015 14.2 10.5 21 3.8 10.5 2.7 1 1 0 1 1 1 0 MFS_1 like family GerE PF00196.19 EME69050.1 - 2.5e-13 49.4 0.2 4.7e-13 48.5 0.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Autoind_bind PF03472.15 EME69050.1 - 1.5e-08 34.2 0.0 2e-08 33.8 0.0 1.2 1 0 0 1 1 1 1 Autoinducer binding domain Sigma70_r4_2 PF08281.12 EME69050.1 - 1.4e-07 31.0 0.4 4.1e-07 29.6 0.4 1.8 1 1 1 2 2 2 1 Sigma-70, region 4 HTH_38 PF13936.6 EME69050.1 - 0.00073 19.2 0.1 0.0021 17.8 0.1 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma70_ECF PF07638.11 EME69050.1 - 0.017 15.0 0.4 0.036 14.0 0.1 1.7 2 0 0 2 2 2 0 ECF sigma factor HTH_23 PF13384.6 EME69050.1 - 0.019 14.7 0.3 0.038 13.8 0.3 1.5 1 0 0 1 1 1 0 Homeodomain-like domain Sigma70_r4 PF04545.16 EME69050.1 - 0.034 13.7 2.7 0.037 13.5 1.0 2.0 2 1 0 2 2 2 0 Sigma-70, region 4 CaMBD PF02888.16 EME69050.1 - 0.047 13.9 0.1 0.13 12.5 0.1 1.7 1 0 0 1 1 1 0 Calmodulin binding domain GerE PF00196.19 EME69051.1 - 6.4e-13 48.0 0.0 7.3e-13 47.9 0.0 1.1 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 EME69051.1 - 2.7e-07 30.2 0.2 3.6e-07 29.7 0.2 1.1 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_ECF PF07638.11 EME69051.1 - 0.00014 21.8 0.0 0.00014 21.8 0.0 1.1 1 0 0 1 1 1 1 ECF sigma factor HTH_10 PF04967.12 EME69051.1 - 0.00032 20.4 0.7 0.00092 19.0 0.2 1.9 2 0 0 2 2 2 1 HTH DNA binding domain Sigma70_r4 PF04545.16 EME69051.1 - 0.0012 18.3 0.7 0.0065 16.0 0.7 1.9 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_11 PF08279.12 EME69051.1 - 0.0023 17.9 0.2 0.0024 17.8 0.2 1.2 1 0 0 1 1 1 1 HTH domain HTH_23 PF13384.6 EME69051.1 - 0.012 15.4 0.1 0.017 14.9 0.1 1.3 1 1 0 1 1 1 0 Homeodomain-like domain DUF134 PF02001.16 EME69051.1 - 0.045 14.3 0.2 0.055 14.0 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function DUF134 DUF746 PF05344.11 EME69051.1 - 0.051 13.4 0.0 0.061 13.2 0.0 1.1 1 0 0 1 1 1 0 Domain of Unknown Function (DUF746) HTH_24 PF13412.6 EME69051.1 - 0.075 12.6 0.1 0.11 12.1 0.1 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_30 PF13556.6 EME69051.1 - 0.08 12.8 0.2 0.096 12.5 0.2 1.1 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain Trans_reg_C PF00486.28 EME69051.1 - 0.087 12.9 0.2 1.7 8.8 0.2 2.0 1 1 0 1 1 1 0 Transcriptional regulatory protein, C terminal HTH_3 PF01381.22 EME69052.1 - 5.6e-09 35.9 0.3 7.1e-09 35.6 0.3 1.1 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 EME69052.1 - 7.7e-08 32.6 1.8 9.6e-08 32.3 1.8 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 EME69052.1 - 2.9e-05 23.8 0.5 4e-05 23.4 0.5 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 EME69052.1 - 0.0001 22.3 0.0 0.00013 21.9 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 EME69052.1 - 0.021 15.2 0.1 0.03 14.8 0.1 1.2 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_37 PF13744.6 EME69052.1 - 0.12 12.4 0.7 0.27 11.2 0.5 1.6 1 1 1 2 2 2 0 Helix-turn-helix domain DUF2007 PF09413.10 EME69052.1 - 0.12 12.6 0.1 0.27 11.4 0.0 1.6 2 0 0 2 2 2 0 Putative prokaryotic signal transducing protein Autotransporter PF03797.19 EME69053.1 - 4e-57 193.8 28.9 4e-57 193.8 28.9 6.3 3 1 1 6 6 6 1 Autotransporter beta-domain DUF3575 PF12099.8 EME69053.1 - 0.76 9.1 5.6 0.16 11.3 0.5 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3575) Hydrolase_4 PF12146.8 EME69054.1 - 2.2e-06 27.1 0.1 0.011 15.0 0.1 2.1 1 1 1 2 2 2 2 Serine aminopeptidase, S33 Cutinase PF01083.22 EME69054.1 - 0.00095 19.2 0.2 0.0016 18.4 0.1 1.4 2 0 0 2 2 2 1 Cutinase Abhydrolase_1 PF00561.20 EME69054.1 - 0.0033 17.1 0.1 0.0083 15.8 0.1 1.6 1 1 1 2 2 2 1 alpha/beta hydrolase fold Lipase_3 PF01764.25 EME69054.1 - 0.0066 16.3 0.0 0.011 15.7 0.0 1.3 1 0 0 1 1 1 1 Lipase (class 3) Chlorophyllase2 PF12740.7 EME69054.1 - 0.04 12.8 0.0 0.52 9.2 0.1 2.0 2 0 0 2 2 2 0 Chlorophyllase enzyme FSH1 PF03959.13 EME69054.1 - 0.073 12.7 0.0 0.19 11.4 0.0 1.5 1 1 0 1 1 1 0 Serine hydrolase (FSH1) DUF5029 PF16432.5 EME69054.1 - 0.097 12.2 0.1 0.13 11.8 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5029) DUF2974 PF11187.8 EME69054.1 - 0.1 12.2 0.1 0.14 11.7 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2974) DLH PF01738.18 EME69054.1 - 0.14 11.6 0.0 0.2 11.2 0.0 1.3 1 0 0 1 1 1 0 Dienelactone hydrolase family Abhydrolase_6 PF12697.7 EME69054.1 - 0.15 12.7 7.3 0.078 13.6 2.7 2.3 1 1 1 2 2 2 0 Alpha/beta hydrolase family Abhydrolase_2 PF02230.16 EME69054.1 - 0.2 11.4 0.1 2.6 7.8 0.1 2.0 1 1 0 1 1 1 0 Phospholipase/Carboxylesterase DUF676 PF05057.14 EME69054.1 - 0.25 10.8 0.0 0.33 10.4 0.0 1.1 1 0 0 1 1 1 0 Putative serine esterase (DUF676) POTRA_2 PF08479.11 EME69055.1 - 1.5e-18 66.4 0.0 2.7e-18 65.6 0.0 1.4 1 0 0 1 1 1 1 POTRA domain, ShlB-type ShlB PF03865.13 EME69055.1 - 4.9e-18 65.6 7.5 7.8e-18 65.0 7.5 1.3 1 0 0 1 1 1 1 Haemolysin secretion/activation protein ShlB/FhaC/HecB POTRA PF07244.15 EME69055.1 - 0.08 13.5 0.0 0.32 11.6 0.0 2.1 2 0 0 2 2 2 0 Surface antigen variable number repeat Haemagg_act PF05860.13 EME69057.1 - 2.5e-23 82.3 5.7 1.3e-22 80.0 5.7 2.4 1 0 0 1 1 1 1 haemagglutination activity domain Resolvase PF00239.21 EME69058.1 - 4.7e-18 65.7 2.1 1.2e-17 64.4 1.4 1.9 2 0 0 2 2 2 1 Resolvase, N terminal domain Recombinase PF07508.13 EME69058.1 - 0.00027 21.3 0.0 0.00046 20.5 0.0 1.3 1 0 0 1 1 1 1 Recombinase ThrE PF06738.12 EME69059.1 - 0.03 13.7 0.7 0.042 13.2 0.7 1.2 1 0 0 1 1 1 0 Putative threonine/serine exporter TrwB_AAD_bind PF10412.9 EME69062.1 - 4.2e-06 25.9 0.0 0.00066 18.7 0.0 2.2 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain TraG-D_C PF12696.7 EME69062.1 - 2.2e-05 24.4 0.0 4.4e-05 23.5 0.0 1.5 1 0 0 1 1 1 1 TraM recognition site of TraD and TraG DUF87 PF01935.17 EME69062.1 - 6.5e-05 23.1 0.0 0.0014 18.8 0.0 2.5 2 0 0 2 2 2 1 Helicase HerA, central domain AAA_22 PF13401.6 EME69062.1 - 7e-05 23.1 0.0 0.0025 18.1 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_10 PF12846.7 EME69062.1 - 0.00055 19.0 0.0 0.0015 17.5 0.0 1.6 2 0 0 2 2 2 1 AAA-like domain ABC_tran PF00005.27 EME69062.1 - 0.018 15.6 0.0 0.063 13.8 0.0 1.8 2 0 0 2 2 2 0 ABC transporter AAA_16 PF13191.6 EME69062.1 - 0.032 14.6 0.0 0.27 11.6 0.0 2.4 2 0 0 2 2 2 0 AAA ATPase domain AAA_19 PF13245.6 EME69062.1 - 0.04 14.2 0.0 0.24 11.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 EME69062.1 - 0.041 13.6 0.0 0.11 12.2 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain T4SS-DNA_transf PF02534.14 EME69062.1 - 0.047 12.5 0.0 4.1 6.1 0.0 2.1 2 0 0 2 2 2 0 Type IV secretory system Conjugative DNA transfer ATPase_2 PF01637.18 EME69062.1 - 0.09 12.7 0.5 3.4 7.5 0.1 3.0 3 1 0 3 3 3 0 ATPase domain predominantly from Archaea FtsK_SpoIIIE PF01580.18 EME69062.1 - 0.14 11.5 0.0 0.28 10.5 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family Replic_Relax PF13814.6 EME69063.1 - 1.3e-05 25.3 0.2 2.1e-05 24.7 0.2 1.3 1 0 0 1 1 1 1 Replication-relaxation Barstar PF01337.18 EME69065.1 - 0.042 13.9 0.0 0.061 13.3 0.0 1.3 1 0 0 1 1 1 0 Barstar (barnase inhibitor) Jnk-SapK_ap_N PF09744.9 EME69067.1 - 0.00091 19.5 0.7 0.0032 17.7 0.1 1.8 2 0 0 2 2 2 1 JNK_SAPK-associated protein-1 DUF3584 PF12128.8 EME69067.1 - 0.0042 14.7 0.9 0.0061 14.2 0.9 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) DUF812 PF05667.11 EME69067.1 - 0.01 14.8 1.3 0.016 14.1 1.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF812) DUF2570 PF10828.8 EME69067.1 - 0.029 14.2 0.3 0.055 13.3 0.3 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2570) Fmp27_WPPW PF10359.9 EME69067.1 - 0.035 13.0 0.3 0.037 12.9 0.3 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain DegS PF05384.11 EME69067.1 - 0.24 10.9 4.0 2.2 7.7 1.8 2.2 1 1 1 2 2 2 0 Sensor protein DegS YscO-like PF16789.5 EME69067.1 - 0.7 9.9 4.9 0.11 12.5 1.3 1.5 2 0 0 2 2 2 0 YscO-like protein TPR_MLP1_2 PF07926.12 EME69067.1 - 1.6 8.8 10.7 0.1 12.7 4.2 2.2 2 1 1 3 3 3 0 TPR/MLP1/MLP2-like protein FlgN PF05130.12 EME69067.1 - 2.1 8.8 9.6 0.11 13.0 3.5 1.8 2 0 0 2 2 2 0 FlgN protein CCDC53 PF10152.9 EME69067.1 - 2.8 8.4 5.3 5.3 7.4 5.3 1.4 1 1 0 1 1 1 0 Subunit CCDC53 of WASH complex DUF4200 PF13863.6 EME69067.1 - 3.8 7.9 8.1 0.19 12.1 2.4 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) APG6_N PF17675.1 EME69067.1 - 5.3 7.6 9.1 0.95 10.0 2.9 2.0 2 0 0 2 2 2 0 Apg6 coiled-coil region FliM PF02154.15 EME69068.1 - 1.1e-65 221.1 0.1 1.5e-65 220.7 0.1 1.2 1 0 0 1 1 1 1 Flagellar motor switch protein FliM FliMN_C PF01052.20 EME69068.1 - 1.9e-19 69.4 0.0 1.2e-18 66.8 0.0 2.1 2 0 0 2 2 2 1 Type III flagellar switch regulator (C-ring) FliN C-term FliL PF03748.14 EME69069.1 - 5.3e-19 68.7 0.8 8.2e-19 68.1 0.8 1.3 1 0 0 1 1 1 1 Flagellar basal body-associated protein FliL Flg_bbr_C PF06429.13 EME69070.1 - 1.7e-13 50.5 3.0 4.7e-13 49.1 3.0 1.8 1 0 0 1 1 1 1 Flagellar basal body rod FlgEFG protein C-terminal Flg_bb_rod PF00460.20 EME69070.1 - 1.9e-07 30.9 0.4 1.9e-07 30.9 0.4 1.7 2 0 0 2 2 2 1 Flagella basal body rod protein Flg_bbr_C PF06429.13 EME69071.1 - 1.4e-27 95.7 0.4 4.8e-27 93.9 0.4 2.0 1 0 0 1 1 1 1 Flagellar basal body rod FlgEFG protein C-terminal Flg_bb_rod PF00460.20 EME69071.1 - 1.3e-09 37.8 8.6 3.3e-09 36.5 8.6 1.8 1 0 0 1 1 1 1 Flagella basal body rod protein Nuc_deoxyrib_tr PF05014.15 EME69071.1 - 0.11 12.5 0.0 1.3 9.0 0.0 2.2 2 0 0 2 2 2 0 Nucleoside 2-deoxyribosyltransferase ChapFlgA PF13144.6 EME69072.1 - 2.1e-33 115.0 4.7 4.5e-33 113.9 4.7 1.6 1 0 0 1 1 1 1 Chaperone for flagella basal body P-ring formation SAF PF08666.12 EME69072.1 - 5.2e-05 23.8 0.7 0.00048 20.7 0.2 2.6 2 0 0 2 2 2 1 SAF domain ChapFlgA_N PF17656.1 EME69072.1 - 0.011 15.9 0.2 0.034 14.3 0.0 1.9 2 0 0 2 2 2 0 FlgA N-terminal domain FlgH PF02107.16 EME69073.1 - 6.4e-53 178.8 0.5 7.7e-53 178.6 0.5 1.1 1 0 0 1 1 1 1 Flagellar L-ring protein Trypsin_2 PF13365.6 EME69074.1 - 8.2e-34 117.7 0.4 1.4e-33 116.9 0.4 1.4 1 0 0 1 1 1 1 Trypsin-like peptidase domain PDZ_2 PF13180.6 EME69074.1 - 1e-29 102.6 0.1 1.5e-16 60.5 0.1 2.6 2 0 0 2 2 2 2 PDZ domain PDZ_6 PF17820.1 EME69074.1 - 8.1e-24 83.2 0.5 6.1e-11 42.0 0.0 3.5 3 0 0 3 3 3 2 PDZ domain PDZ PF00595.24 EME69074.1 - 1.1e-18 67.4 0.1 6.9e-10 39.1 0.0 2.8 3 0 0 3 3 3 2 PDZ domain Trypsin PF00089.26 EME69074.1 - 1.5e-14 54.4 0.0 3.4e-14 53.2 0.0 1.5 1 1 0 1 1 1 1 Trypsin Tricorn_PDZ PF14685.6 EME69074.1 - 0.0023 17.9 0.1 2.9 7.9 0.0 2.6 2 0 0 2 2 2 2 Tricorn protease PDZ domain GRASP55_65 PF04495.14 EME69074.1 - 0.006 16.9 0.0 0.56 10.5 0.0 2.3 2 0 0 2 2 2 1 GRASP55/65 PDZ-like domain Peptidase_S46 PF10459.9 EME69074.1 - 0.0082 14.8 0.1 0.044 12.4 0.1 1.8 2 0 0 2 2 2 1 Peptidase S46 Peptidase_S29 PF02907.15 EME69074.1 - 0.087 12.6 0.0 0.26 11.0 0.1 1.7 2 0 0 2 2 2 0 Hepatitis C virus NS3 protease Peptidase_S7 PF00949.21 EME69074.1 - 0.26 11.1 0.4 0.45 10.3 0.4 1.3 1 0 0 1 1 1 0 Peptidase S7, Flavivirus NS3 serine protease DUF2065 PF09838.9 EME69075.1 - 4.9e-19 68.1 13.2 5.4e-19 67.9 13.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2065) Band_7 PF01145.25 EME69076.1 - 3.3e-28 98.9 3.8 3.3e-28 98.9 3.8 1.8 2 0 0 2 2 2 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 EME69076.1 - 0.0093 15.7 0.2 0.017 14.8 0.2 1.4 1 0 0 1 1 1 1 SPFH domain-Band 7 family DUF3323 PF11796.8 EME69076.1 - 0.04 13.8 3.9 0.058 13.3 3.9 1.2 1 0 0 1 1 1 0 Protein of unknown function N-terminus (DUF3323) MgtE_N PF03448.17 EME69076.1 - 0.083 13.5 1.5 0.19 12.3 1.5 1.6 1 0 0 1 1 1 0 MgtE intracellular N domain FXMR_C2 PF16098.5 EME69076.1 - 0.15 12.5 1.7 0.33 11.5 1.7 1.5 1 0 0 1 1 1 0 Fragile X-related mental retardation protein C-terminal region 2 Band_7 PF01145.25 EME69077.1 - 2.3e-29 102.7 2.0 8.4e-29 100.8 0.5 2.0 2 0 0 2 2 2 1 SPFH domain / Band 7 family FTCD_C PF04961.12 EME69077.1 - 0.011 15.5 0.2 0.011 15.5 0.2 1.9 2 0 0 2 2 2 0 Formiminotransferase-cyclodeaminase GNAT_like PF18407.1 EME69077.1 - 0.046 14.1 1.3 0.23 11.8 0.1 2.6 2 1 0 2 2 2 0 GCN5-related N-acetyltransferase like domain DUF1481 PF07356.12 EME69077.1 - 0.11 12.3 0.6 0.2 11.4 0.6 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1481) HflK_N PF12221.8 EME69077.1 - 0.11 12.5 39.7 34 4.5 39.7 2.6 1 1 0 1 1 1 0 Bacterial membrane protein N terminal ParA PF10609.9 EME69078.1 - 2.4e-105 351.4 0.2 3e-105 351.1 0.2 1.1 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase FeS_assembly_P PF01883.19 EME69078.1 - 1.5e-17 63.5 0.3 1.1e-16 60.7 0.2 2.2 2 0 0 2 2 2 1 Iron-sulfur cluster assembly protein CbiA PF01656.23 EME69078.1 - 5e-14 52.4 0.0 9.4e-14 51.6 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 EME69078.1 - 7.1e-10 39.1 0.2 2.9e-08 33.8 0.2 2.1 2 0 0 2 2 2 1 AAA domain MipZ PF09140.11 EME69078.1 - 2.7e-08 33.4 0.0 5.8e-08 32.3 0.0 1.5 1 1 0 1 1 1 1 ATPase MipZ Fer4_NifH PF00142.18 EME69078.1 - 5.6e-08 32.5 0.1 7.1e-05 22.4 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.15 EME69078.1 - 1.2e-05 24.6 2.7 0.00037 19.8 0.9 2.6 2 1 0 2 2 2 1 Anion-transporting ATPase VirC1 PF07015.11 EME69078.1 - 0.0026 17.1 0.3 0.0051 16.1 0.3 1.4 1 0 0 1 1 1 1 VirC1 protein SRP54 PF00448.22 EME69078.1 - 0.013 15.1 0.1 0.027 14.1 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain MeaB PF03308.16 EME69078.1 - 0.043 12.8 0.2 0.072 12.1 0.2 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB APS_kinase PF01583.20 EME69078.1 - 0.048 13.6 0.1 0.46 10.4 0.0 2.0 2 0 0 2 2 2 0 Adenylylsulphate kinase AAA_26 PF13500.6 EME69078.1 - 0.059 13.2 1.6 22 4.8 0.3 3.2 2 1 1 3 3 3 0 AAA domain AAA_25 PF13481.6 EME69078.1 - 0.06 12.9 0.4 0.15 11.6 0.1 1.8 2 0 0 2 2 2 0 AAA domain A2L_zn_ribbon PF08792.10 EME69078.1 - 0.17 11.6 0.1 0.3 10.9 0.1 1.3 1 0 0 1 1 1 0 A2L zinc ribbon domain NTPase_1 PF03266.15 EME69078.1 - 0.18 11.7 0.1 0.35 10.8 0.1 1.4 1 0 0 1 1 1 0 NTPase FTHFS PF01268.19 EME69078.1 - 1 7.5 3.8 1.7 6.8 3.8 1.4 1 0 0 1 1 1 0 Formate--tetrahydrofolate ligase Na_H_Exchanger PF00999.21 EME69079.1 - 8.8e-67 225.5 47.8 1.2e-66 225.1 47.8 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.18 EME69079.1 - 3.9e-23 81.9 0.9 8e-23 80.9 0.9 1.6 1 0 0 1 1 1 1 TrkA-N domain 2-Hacid_dh_C PF02826.19 EME69079.1 - 0.038 13.4 0.0 0.07 12.5 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Gp_dh_N PF00044.24 EME69079.1 - 0.082 13.3 0.2 0.26 11.6 0.1 1.8 2 0 0 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 EME69079.1 - 0.2 11.2 0.1 0.32 10.6 0.1 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HMGL-like PF00682.19 EME69080.1 - 1.3e-76 257.6 0.0 2.3e-75 253.5 0.0 2.0 2 0 0 2 2 2 1 HMGL-like LeuA_dimer PF08502.10 EME69080.1 - 1.8e-28 99.1 0.5 4.1e-28 97.9 0.1 1.8 2 0 0 2 2 2 1 LeuA allosteric (dimerisation) domain HATPase_c PF02518.26 EME69081.1 - 4.5e-18 65.8 0.0 8.6e-18 64.9 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHASE PF03924.13 EME69081.1 - 7.6e-08 32.5 1.0 2.2e-07 31.0 0.5 2.0 2 0 0 2 2 2 1 CHASE domain HisKA PF00512.25 EME69081.1 - 1.4e-07 31.4 0.1 5.3e-07 29.6 0.1 2.0 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.6 EME69081.1 - 0.038 13.8 0.0 0.064 13.1 0.0 1.3 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 EME69082.1 - 1.2e-20 73.7 0.0 1.4e-20 73.5 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain F-box_4 PF15966.5 EME69083.1 - 0.11 12.3 0.0 0.22 11.4 0.0 1.4 1 0 0 1 1 1 0 F-box DUF2336 PF10098.9 EME69084.1 - 3.4e-83 279.1 12.0 4.7e-83 278.7 2.3 2.1 2 0 0 2 2 2 2 Uncharacterised protein conserved in bacteria (DUF2336) HEAT_2 PF13646.6 EME69084.1 - 0.042 14.2 3.7 0.24 11.8 0.6 2.6 2 0 0 2 2 2 0 HEAT repeats Tcp11 PF05794.13 EME69084.1 - 0.044 12.9 0.8 0.081 12.0 0.8 1.6 1 1 0 1 1 1 0 T-complex protein 11 GATase PF00117.28 EME69085.1 - 1.6e-13 50.9 0.0 2.2e-13 50.4 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 EME69085.1 - 4.2e-05 23.4 0.9 7.6e-05 22.6 0.1 1.7 2 0 0 2 2 2 1 Peptidase C26 GATase_3 PF07685.14 EME69085.1 - 0.15 11.6 0.0 0.19 11.3 0.0 1.2 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain MCPsignal PF00015.21 EME69086.1 - 8.1e-33 113.6 48.4 1.1e-31 109.9 27.9 3.8 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 EME69086.1 - 3.5e-08 33.7 4.3 1.9e-07 31.4 0.3 4.0 3 1 1 4 4 4 1 HAMP domain 4HB_MCP_1 PF12729.7 EME69086.1 - 1.3e-06 28.1 5.5 5.1e-06 26.2 0.0 3.8 3 1 1 4 4 4 1 Four helix bundle sensory module for signal transduction DUF1664 PF07889.12 EME69086.1 - 0.0014 18.6 11.1 0.36 10.9 0.6 3.8 2 2 2 4 4 4 4 Protein of unknown function (DUF1664) DUF948 PF06103.11 EME69086.1 - 0.027 14.7 29.7 0.68 10.2 3.2 5.7 2 1 4 6 6 6 0 Bacterial protein of unknown function (DUF948) DUF3450 PF11932.8 EME69086.1 - 0.071 12.4 27.9 0.08 12.2 5.5 5.1 2 1 1 5 5 5 0 Protein of unknown function (DUF3450) Syntaxin-6_N PF09177.11 EME69086.1 - 0.11 13.1 4.6 15 6.2 0.6 3.4 2 1 0 2 2 2 0 Syntaxin 6, N-terminal Laminin_II PF06009.12 EME69086.1 - 0.47 10.5 17.5 0.75 9.8 3.3 3.6 1 1 4 5 5 5 0 Laminin Domain II Vps53_N PF04100.12 EME69086.1 - 2.4 7.0 9.0 0.18 10.7 2.3 2.1 2 0 0 2 2 2 0 Vps53-like, N-terminal GCN5L1 PF06320.13 EME69086.1 - 6.6 6.9 15.7 23 5.2 6.5 4.0 2 2 0 3 3 3 0 GCN5-like protein 1 (GCN5L1) DUF5455 PF17537.2 EME69086.1 - 8 6.9 9.2 11 6.5 1.7 2.9 2 0 0 2 2 2 0 Family of unknown function (DUF5455) ABC_tran PF00005.27 EME69087.1 - 3e-31 108.8 0.0 5.7e-31 107.8 0.0 1.4 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.23 EME69087.1 - 6.4e-29 101.5 3.6 8.6e-29 101.0 3.6 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region AAA_21 PF13304.6 EME69087.1 - 9.1e-15 55.2 0.2 3.6e-07 30.3 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 EME69087.1 - 1.8e-06 27.9 0.0 0.053 13.2 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.19 EME69087.1 - 3.1e-06 26.8 0.1 0.074 12.5 0.0 2.6 2 1 1 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 EME69087.1 - 0.00063 19.4 0.1 0.0016 18.2 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 EME69087.1 - 0.00084 19.9 0.0 0.0014 19.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain T2SSE PF00437.20 EME69087.1 - 0.024 13.7 0.0 0.071 12.2 0.0 1.7 2 0 0 2 2 2 0 Type II/IV secretion system protein DUF3584 PF12128.8 EME69087.1 - 0.041 11.4 0.1 0.063 10.8 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_22 PF13401.6 EME69087.1 - 0.045 14.0 1.0 0.27 11.5 0.0 2.5 3 0 0 3 3 3 0 AAA domain AAA_30 PF13604.6 EME69087.1 - 0.063 13.0 0.4 0.16 11.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 EME69087.1 - 0.1 13.0 0.6 0.42 11.0 0.6 2.1 1 1 0 1 1 1 0 AAA ATPase domain DLIC PF05783.11 EME69087.1 - 0.11 11.3 0.0 0.17 10.7 0.0 1.2 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) AAA PF00004.29 EME69087.1 - 0.14 12.6 0.0 27 5.2 0.0 2.7 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) ABC_ATPase PF09818.9 EME69087.1 - 0.17 10.7 0.0 0.41 9.4 0.1 1.5 2 0 0 2 2 2 0 Predicted ATPase of the ABC class NACHT PF05729.12 EME69087.1 - 0.33 10.9 1.8 0.49 10.3 0.2 2.1 3 0 0 3 3 3 0 NACHT domain Oleosin PF01277.17 EME69087.1 - 7.5 6.3 13.9 4.2 7.1 0.1 3.8 4 0 0 4 4 3 0 Oleosin HlyD_3 PF13437.6 EME69088.1 - 2e-14 54.2 0.4 2e-14 54.2 0.4 3.1 4 1 1 5 5 4 1 HlyD family secretion protein HlyD_D23 PF16576.5 EME69088.1 - 4.1e-10 39.2 2.1 9.7e-08 31.5 2.1 2.4 1 1 0 1 1 1 1 Barrel-sandwich domain of CusB or HlyD membrane-fusion HlyD PF00529.20 EME69088.1 - 3e-07 30.2 0.0 7.3e-07 29.0 0.0 1.7 1 1 0 1 1 1 1 HlyD membrane-fusion protein of T1SS Biotin_lipoyl_2 PF13533.6 EME69088.1 - 3e-05 23.7 0.1 0.016 15.1 0.0 3.6 2 2 0 2 2 2 1 Biotin-lipoyl like Biotin_lipoyl PF00364.22 EME69088.1 - 0.0047 16.7 1.6 0.071 12.9 0.2 2.7 2 1 0 2 2 2 1 Biotin-requiring enzyme Rotamase_2 PF13145.6 EME69088.1 - 0.21 12.4 1.2 29 5.5 0.0 2.3 2 0 0 2 2 2 0 PPIC-type PPIASE domain OEP PF02321.18 EME69088.1 - 0.41 10.4 12.8 0.082 12.7 8.1 2.1 1 1 0 2 2 2 0 Outer membrane efflux protein Exonuc_VII_L PF02601.15 EME69088.1 - 0.68 9.5 6.5 4.3 6.8 6.5 1.9 1 1 0 1 1 1 0 Exonuclease VII, large subunit UPF0242 PF06785.11 EME69088.1 - 1.1 9.3 5.7 1.1 9.3 4.9 1.4 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus DUF4407 PF14362.6 EME69088.1 - 3.4 6.9 9.6 5.5 6.3 9.6 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) TPR_MLP1_2 PF07926.12 EME69088.1 - 4.9 7.2 11.1 7.5 6.6 7.2 2.5 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein CMD PF02627.20 EME69089.1 - 1.7e-15 56.9 0.6 7.9e-15 54.7 0.0 1.9 2 0 0 2 2 2 1 Carboxymuconolactone decarboxylase family Sigma70_r2 PF04542.14 EME69090.1 - 6.2e-13 48.3 2.1 1.3e-12 47.3 2.1 1.5 1 0 0 1 1 1 1 Sigma-70 region 2 Sigma70_r4_2 PF08281.12 EME69090.1 - 1.6e-12 46.9 0.5 4.3e-12 45.5 0.5 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 EME69090.1 - 1.6e-05 24.3 0.1 3.1e-05 23.4 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 SnoaL_2 PF12680.7 EME69090.1 - 0.0084 16.7 0.1 0.026 15.1 0.0 1.9 2 0 0 2 2 2 1 SnoaL-like domain HAD PF12710.7 EME69091.1 - 8e-20 72.0 0.3 1.7e-19 71.0 0.2 1.6 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 EME69091.1 - 4.9e-11 43.3 1.0 8.6e-11 42.5 1.0 1.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 EME69091.1 - 1.7e-07 31.3 0.0 3.8e-07 30.1 0.0 1.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase S6PP PF05116.13 EME69091.1 - 0.005 16.4 0.2 1.3 8.5 0.0 2.3 2 0 0 2 2 2 2 Sucrose-6F-phosphate phosphohydrolase Put_Phosphatase PF06888.12 EME69091.1 - 0.023 14.1 0.0 0.073 12.5 0.0 1.7 2 0 0 2 2 2 0 Putative Phosphatase DUF1015 PF06245.11 EME69092.1 - 2e-129 431.9 0.0 2.2e-129 431.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1015) PDZ_6 PF17820.1 EME69094.1 - 2.7e-09 36.7 0.1 6.4e-09 35.5 0.0 1.7 2 0 0 2 2 2 1 PDZ domain PDZ_2 PF13180.6 EME69094.1 - 7.8e-08 32.5 0.0 0.00015 22.0 0.0 2.2 2 0 0 2 2 2 2 PDZ domain PDZ PF00595.24 EME69094.1 - 3.3e-06 27.3 0.0 4.8e-06 26.8 0.0 1.3 1 0 0 1 1 1 1 PDZ domain MgsA_C PF12002.8 EME69095.1 - 2.2e-71 239.2 0.0 3e-71 238.7 0.0 1.2 1 0 0 1 1 1 1 MgsA AAA+ ATPase C terminal AAA_assoc_2 PF16193.5 EME69095.1 - 6.8e-18 64.8 0.0 2.1e-17 63.2 0.0 1.8 2 0 0 2 2 1 1 AAA C-terminal domain AAA PF00004.29 EME69095.1 - 2.2e-14 54.0 0.0 3.8e-14 53.2 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 EME69095.1 - 3.7e-11 43.0 0.0 7.5e-11 42.0 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_5 PF07728.14 EME69095.1 - 3.2e-06 27.2 0.0 0.00078 19.5 0.0 2.3 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_18 PF13238.6 EME69095.1 - 4.2e-05 24.1 0.0 8.1e-05 23.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 EME69095.1 - 4.8e-05 23.8 3.9 0.00061 20.2 0.0 2.9 2 2 1 3 3 2 1 AAA ATPase domain Sigma54_activat PF00158.26 EME69095.1 - 5.4e-05 22.9 0.0 0.059 13.1 0.0 2.2 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_22 PF13401.6 EME69095.1 - 0.00012 22.4 0.1 0.019 15.2 0.0 2.7 1 1 1 2 2 2 1 AAA domain Mg_chelatase PF01078.21 EME69095.1 - 0.0002 20.8 0.1 0.013 14.9 0.1 2.2 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI Sigma54_activ_2 PF14532.6 EME69095.1 - 0.00022 21.3 0.0 0.00046 20.3 0.0 1.5 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_14 PF13173.6 EME69095.1 - 0.00027 21.0 0.0 0.0005 20.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 EME69095.1 - 0.00093 19.0 0.0 0.23 11.2 0.0 2.5 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 EME69095.1 - 0.0041 17.4 0.0 0.0074 16.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 EME69095.1 - 0.01 15.6 0.0 0.02 14.6 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein SKI PF01202.22 EME69095.1 - 0.011 15.9 0.0 0.034 14.3 0.0 1.9 3 0 0 3 3 1 0 Shikimate kinase AAA_33 PF13671.6 EME69095.1 - 0.012 15.8 0.0 0.026 14.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain ResIII PF04851.15 EME69095.1 - 0.013 15.5 0.0 1.5 8.8 0.0 2.2 1 1 1 2 2 2 0 Type III restriction enzyme, res subunit RNA_helicase PF00910.22 EME69095.1 - 0.014 15.7 0.0 0.025 14.9 0.0 1.4 1 0 0 1 1 1 0 RNA helicase AAA_25 PF13481.6 EME69095.1 - 0.021 14.4 1.3 0.11 12.0 0.1 2.5 2 1 0 2 2 2 0 AAA domain AAA_3 PF07726.11 EME69095.1 - 0.024 14.5 0.0 0.086 12.7 0.0 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Viral_helicase1 PF01443.18 EME69095.1 - 0.027 14.2 0.0 0.041 13.6 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_19 PF13245.6 EME69095.1 - 0.028 14.8 0.1 3.3 8.0 0.1 2.3 1 1 1 2 2 2 0 AAA domain AAA_24 PF13479.6 EME69095.1 - 0.037 13.7 0.0 0.064 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 EME69095.1 - 0.039 13.9 0.0 0.066 13.1 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain TsaE PF02367.17 EME69095.1 - 0.045 13.7 0.0 0.076 13.0 0.0 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_17 PF13207.6 EME69095.1 - 0.064 13.7 0.0 0.11 12.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 EME69095.1 - 0.076 13.5 0.0 0.14 12.7 0.0 1.4 1 0 0 1 1 1 0 ABC transporter TIP49 PF06068.13 EME69095.1 - 0.081 12.1 0.0 0.13 11.4 0.0 1.2 1 0 0 1 1 1 0 TIP49 P-loop domain Zeta_toxin PF06414.12 EME69095.1 - 0.12 11.6 0.0 0.19 11.0 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin Cytidylate_kin PF02224.18 EME69095.1 - 0.2 11.4 0.0 0.31 10.8 0.0 1.3 1 0 0 1 1 1 0 Cytidylate kinase Parvo_NS1 PF01057.17 EME69095.1 - 0.24 10.5 0.0 0.38 9.8 0.0 1.2 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 DUF2207 PF09972.9 EME69096.1 - 0.00067 18.5 0.0 0.00071 18.5 0.0 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2207) DUF2721 PF11026.8 EME69096.1 - 0.0017 18.3 0.6 0.0017 18.3 0.6 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF2721) Baculo_ODV-E27 PF05314.11 EME69096.1 - 0.084 12.0 0.0 0.099 11.8 0.0 1.1 1 0 0 1 1 1 0 Baculovirus occlusion-derived virus envelope protein EC27 Radical_SAM PF04055.21 EME69098.1 - 8.8e-15 55.5 0.1 1.5e-14 54.8 0.1 1.4 1 0 0 1 1 1 1 Radical SAM superfamily B12-binding PF02310.19 EME69098.1 - 3.5e-06 27.1 0.3 0.00015 21.8 0.1 2.9 2 1 0 2 2 2 1 B12 binding domain Glyco_transf_21 PF13506.6 EME69099.1 - 1.5e-44 151.5 0.0 2.3e-44 150.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_3 PF13641.6 EME69099.1 - 7.4e-30 104.5 0.0 9.8e-30 104.1 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 EME69099.1 - 2e-13 50.7 0.1 3.1e-13 50.1 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glycos_transf_2 PF00535.26 EME69099.1 - 1.4e-07 31.5 0.0 2.1e-07 30.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 MlaC PF05494.12 EME69100.1 - 4.8e-35 120.8 0.0 5.5e-35 120.6 0.0 1.0 1 0 0 1 1 1 1 MlaC protein TrbC PF04956.13 EME69100.1 - 0.082 13.1 0.1 0.17 12.1 0.1 1.5 1 0 0 1 1 1 0 TrbC/VIRB2 family DUF2478 PF10649.9 EME69102.1 - 7.1e-53 178.5 0.1 1.3e-52 177.6 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF2478) DUF364 PF04016.12 EME69102.1 - 1.7e-30 105.6 0.0 2.5e-30 105.0 0.0 1.3 1 0 0 1 1 1 1 Putative heavy-metal chelation DUF4213 PF13938.6 EME69102.1 - 9.8e-18 64.2 0.3 2.2e-17 63.0 0.3 1.7 1 0 0 1 1 1 1 Putative heavy-metal chelation Methyltransf_23 PF13489.6 EME69103.1 - 1.3e-16 60.8 0.0 2.1e-16 60.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 EME69103.1 - 2e-12 47.6 0.0 3.7e-12 46.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 EME69103.1 - 2.4e-12 47.4 0.0 4.3e-12 46.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 EME69103.1 - 4.2e-09 37.0 0.2 1.1e-08 35.7 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 EME69103.1 - 5.8e-07 29.4 0.0 0.028 14.2 0.0 2.2 2 0 0 2 2 2 2 Methyltransferase domain CMAS PF02353.20 EME69103.1 - 1.9e-06 27.4 0.0 2.4e-06 27.1 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase DUF3419 PF11899.8 EME69103.1 - 1e-05 24.9 0.0 1.2e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3419) PCMT PF01135.19 EME69103.1 - 0.0012 18.7 0.0 0.0037 17.0 0.0 1.7 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RrnaAD PF00398.20 EME69103.1 - 0.039 13.0 0.0 0.053 12.6 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase MetW PF07021.12 EME69103.1 - 0.04 13.5 0.0 0.052 13.1 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW TMEM191C PF15194.6 EME69103.1 - 0.044 14.0 0.0 0.078 13.2 0.0 1.3 1 0 0 1 1 1 0 TMEM191C family FtsJ PF01728.19 EME69103.1 - 0.062 13.4 0.0 0.12 12.4 0.0 1.6 1 1 0 1 1 1 0 FtsJ-like methyltransferase Methyltransf_9 PF08003.11 EME69103.1 - 0.095 11.6 0.0 0.15 10.9 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1698) Ubie_methyltran PF01209.18 EME69103.1 - 0.15 11.4 0.0 2 7.7 0.0 2.0 2 0 0 2 2 2 0 ubiE/COQ5 methyltransferase family Polysacc_deac_1 PF01522.21 EME69104.1 - 1.8e-21 76.3 0.0 2.7e-21 75.8 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide deacetylase GRDA PF04723.14 EME69104.1 - 0.068 13.0 0.0 0.1 12.4 0.0 1.2 1 0 0 1 1 1 0 Glycine reductase complex selenoprotein A Glycos_transf_1 PF00534.20 EME69105.1 - 1.1e-31 109.7 0.0 1.7e-31 109.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 EME69105.1 - 2.2e-26 92.9 0.3 7.1e-26 91.2 0.2 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 EME69105.1 - 6.7e-13 49.0 1.0 1.3e-12 48.1 1.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 EME69105.1 - 2.1e-07 31.5 4.2 2.1e-07 31.5 4.2 2.7 2 2 1 3 3 3 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 EME69105.1 - 7.7e-06 26.2 0.0 1.9e-05 25.0 0.0 1.7 1 1 0 1 1 1 1 Glycosyl transferases group 1 Gemini_V2 PF01524.17 EME69105.1 - 0.0062 16.7 0.0 0.013 15.7 0.0 1.4 1 0 0 1 1 1 1 Geminivirus V2 protein Glycos_transf_2 PF00535.26 EME69106.1 - 4.7e-10 39.5 0.0 7.3e-10 38.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_4 PF13704.6 EME69106.1 - 0.00016 22.1 0.2 0.00062 20.2 0.2 1.9 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 EME69106.1 - 0.00021 21.3 0.3 0.0013 18.7 0.2 1.9 1 1 1 2 2 2 1 Glycosyltransferase like family 2 RHH_1 PF01402.21 EME69107.1 - 7.5e-10 38.4 0.1 7.5e-10 38.4 0.1 2.8 3 0 0 3 3 3 1 Ribbon-helix-helix protein, copG family RHH_5 PF07878.11 EME69107.1 - 0.00036 20.4 1.9 0.0098 15.8 0.1 2.4 2 0 0 2 2 2 2 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 BrnA_antitoxin PF14384.6 EME69107.1 - 0.062 13.8 0.2 0.17 12.4 0.0 1.9 2 0 0 2 2 2 0 BrnA antitoxin of type II toxin-antitoxin system ParE_toxin PF05016.15 EME69108.1 - 1.4e-08 35.2 0.1 1.7e-08 35.0 0.1 1.0 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE Glyco_trans_1_4 PF13692.6 EME69109.1 - 3.6e-09 37.2 0.1 6.2e-09 36.4 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 EME69109.1 - 4e-07 30.3 0.3 8.7e-07 29.2 0.3 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 EME69109.1 - 1.1e-06 28.3 0.0 1.8e-06 27.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 EME69109.1 - 7.3e-06 26.1 0.3 1.4e-05 25.2 0.2 1.6 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 EME69109.1 - 0.049 14.1 13.2 0.029 14.8 7.9 2.9 1 1 1 2 2 2 0 Glycosyl transferase 4-like domain GDP_Man_Dehyd PF16363.5 EME69110.1 - 1.7e-49 169.0 0.0 7.9e-49 166.8 0.0 1.9 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 EME69110.1 - 4.3e-48 163.9 0.0 5.3e-48 163.6 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_4 PF07993.12 EME69110.1 - 1.3e-08 34.3 0.0 0.0014 17.8 0.0 2.3 2 1 0 2 2 2 2 Male sterility protein 3Beta_HSD PF01073.19 EME69110.1 - 1.5e-06 27.4 0.0 2.9e-06 26.5 0.0 1.5 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 EME69110.1 - 2.5e-06 26.8 0.0 5.9e-06 25.6 0.0 1.5 1 1 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 EME69110.1 - 2.2e-05 23.7 0.0 0.33 10.0 0.2 3.0 2 1 0 2 2 2 2 Polysaccharide biosynthesis protein adh_short PF00106.25 EME69110.1 - 0.0046 16.4 0.0 0.0069 15.9 0.0 1.2 1 0 0 1 1 1 1 short chain dehydrogenase Wzy_C PF04932.15 EME69111.1 - 2.4e-07 30.5 3.4 2.4e-07 30.5 3.4 3.9 2 2 2 4 4 4 1 O-Antigen ligase Glycos_transf_2 PF00535.26 EME69112.1 - 2.8e-16 59.8 0.0 4.8e-16 59.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Methyltransf_23 PF13489.6 EME69112.1 - 7.9e-09 35.6 0.0 1.6e-08 34.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 EME69112.1 - 7.4e-06 25.7 0.0 1.6e-05 24.6 0.0 1.5 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_11 PF08241.12 EME69112.1 - 6.1e-05 23.6 0.0 0.00021 21.9 0.0 1.9 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 EME69112.1 - 0.0041 17.8 0.0 0.017 15.8 0.0 2.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 EME69112.1 - 0.0045 17.7 0.0 0.01 16.6 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Glyco_tranf_2_3 PF13641.6 EME69112.1 - 0.027 14.3 0.0 0.04 13.8 0.0 1.2 1 0 0 1 1 1 0 Glycosyltransferase like family 2 Methyltransf_31 PF13847.6 EME69112.1 - 0.12 12.1 0.0 0.68 9.7 0.0 2.0 1 1 0 1 1 1 0 Methyltransferase domain NTP_transferase PF00483.23 EME69113.1 - 7e-65 219.0 0.0 8.3e-65 218.8 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 EME69113.1 - 2.2e-10 41.1 0.0 2.9e-10 40.7 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain GDP_Man_Dehyd PF16363.5 EME69114.1 - 7.2e-91 305.0 0.0 8.1e-91 304.9 0.0 1.0 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 EME69114.1 - 1.9e-65 220.7 0.0 2.3e-65 220.4 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.15 EME69114.1 - 4.5e-13 49.0 0.0 6.6e-13 48.4 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 EME69114.1 - 6.8e-12 45.1 0.0 1.2e-11 44.3 0.0 1.3 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 EME69114.1 - 8e-11 41.6 0.0 2.7e-07 30.0 0.0 2.3 2 1 0 2 2 2 2 Male sterility protein 3Beta_HSD PF01073.19 EME69114.1 - 4.5e-09 35.7 0.0 1.1e-08 34.5 0.0 1.6 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family adh_short PF00106.25 EME69114.1 - 4.8e-05 22.9 0.2 0.1 12.0 0.0 2.8 2 1 0 2 2 2 2 short chain dehydrogenase KR PF08659.10 EME69114.1 - 0.097 12.6 0.0 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 KR domain NmrA PF05368.13 EME69114.1 - 0.14 11.7 0.0 0.19 11.3 0.0 1.2 1 0 0 1 1 1 0 NmrA-like family NAD_binding_10 PF13460.6 EME69114.1 - 0.14 12.0 0.1 0.21 11.5 0.1 1.4 1 0 0 1 1 1 0 NAD(P)H-binding dTDP_sugar_isom PF00908.17 EME69115.1 - 2.9e-57 193.0 0.0 3.3e-57 192.8 0.0 1.0 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase Epimerase PF01370.21 EME69116.1 - 1.4e-21 77.1 0.0 2.2e-21 76.4 0.0 1.3 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 EME69116.1 - 4.7e-09 36.1 0.0 3.5e-08 33.2 0.0 2.3 2 1 0 2 2 2 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 EME69116.1 - 4.6e-06 25.9 0.0 9.1e-06 25.0 0.0 1.4 1 1 0 1 1 1 1 RmlD substrate binding domain KR PF08659.10 EME69116.1 - 0.0035 17.3 0.0 0.0052 16.7 0.0 1.2 1 0 0 1 1 1 1 KR domain adh_short PF00106.25 EME69116.1 - 0.17 11.4 0.0 6.7 6.1 0.0 2.2 2 0 0 2 2 2 0 short chain dehydrogenase DegT_DnrJ_EryC1 PF01041.17 EME69117.1 - 3.2e-79 266.9 0.0 3.8e-79 266.6 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 EME69117.1 - 3.8e-06 25.7 0.0 5e-06 25.3 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.21 EME69117.1 - 0.00063 19.0 0.0 0.0011 18.3 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 EME69117.1 - 0.0018 17.6 0.0 0.033 13.5 0.0 2.0 2 0 0 2 2 2 1 Beta-eliminating lyase Methyltransf_14 PF08484.11 EME69118.1 - 8.4e-47 158.9 0.0 1.4e-46 158.2 0.0 1.4 1 0 0 1 1 1 1 C-methyltransferase C-terminal domain Methyltransf_13 PF08421.11 EME69118.1 - 1.2e-14 54.3 0.1 2.1e-14 53.5 0.1 1.5 1 0 0 1 1 1 1 Putative zinc binding domain Methyltransf_23 PF13489.6 EME69118.1 - 3.6e-13 49.7 0.0 5.7e-13 49.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 EME69118.1 - 5.1e-09 36.8 0.1 9e-09 36.0 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 EME69118.1 - 7e-09 36.2 0.1 1.5e-08 35.2 0.1 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 EME69118.1 - 5.8e-08 33.3 0.1 1.3e-07 32.2 0.1 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 EME69118.1 - 0.0053 16.6 0.0 0.011 15.5 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain B12-binding PF02310.19 EME69120.1 - 3.4e-14 52.9 0.1 7.6e-14 51.8 0.1 1.6 1 0 0 1 1 1 1 B12 binding domain Radical_SAM PF04055.21 EME69120.1 - 4.8e-13 49.8 0.0 2.3e-12 47.6 0.0 2.0 2 0 0 2 2 2 1 Radical SAM superfamily Epimerase_2 PF02350.19 EME69121.1 - 5.4e-111 370.8 0.0 6.7e-111 370.5 0.0 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase Pyr_redox_2 PF07992.14 EME69121.1 - 0.021 14.1 0.0 0.04 13.2 0.0 1.6 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Glyco_transf_4 PF13439.6 EME69121.1 - 0.079 13.0 0.0 0.29 11.1 0.0 2.0 2 1 0 2 2 2 0 Glycosyltransferase Family 4 Pyr_redox_3 PF13738.6 EME69121.1 - 0.11 11.7 0.0 0.17 11.1 0.0 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase SIS_2 PF13580.6 EME69122.1 - 1.2e-22 80.4 0.5 1.6e-22 80.0 0.5 1.2 1 0 0 1 1 1 1 SIS domain SIS PF01380.22 EME69122.1 - 1.3e-11 44.5 0.7 7.8e-11 41.9 0.0 2.2 3 0 0 3 3 3 1 SIS domain NTP_transferase PF00483.23 EME69123.1 - 2.4e-66 223.8 0.0 5.2e-66 222.7 0.0 1.5 2 0 0 2 2 2 1 Nucleotidyl transferase MannoseP_isomer PF01050.18 EME69123.1 - 4.6e-65 218.1 0.1 7.7e-65 217.4 0.1 1.4 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_2 PF07883.11 EME69123.1 - 4.5e-13 48.7 0.1 1.1e-12 47.5 0.1 1.7 1 0 0 1 1 1 1 Cupin domain NTP_transf_3 PF12804.7 EME69123.1 - 5.3e-11 43.1 4.1 1.7e-09 38.3 0.3 3.5 2 1 0 3 3 3 1 MobA-like NTP transferase domain AraC_binding PF02311.19 EME69123.1 - 1e-06 28.7 0.0 2.2e-06 27.6 0.0 1.5 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_6 PF12852.7 EME69123.1 - 0.0014 18.4 0.9 0.052 13.3 0.0 3.2 2 2 1 3 3 3 1 Cupin DUF218 PF02698.17 EME69123.1 - 0.012 15.6 0.1 0.058 13.4 0.0 2.1 1 1 1 2 2 2 0 DUF218 domain Hepar_II_III_N PF16889.5 EME69124.1 - 3.2e-19 69.4 0.0 4.6e-19 68.9 0.0 1.1 1 0 0 1 1 1 1 Heparinase II/III N-terminus Hepar_II_III PF07940.13 EME69124.1 - 9.7e-19 67.9 0.1 1.7e-18 67.1 0.1 1.3 1 0 0 1 1 1 1 Heparinase II/III-like protein Asn_synthase PF00733.21 EME69125.1 - 1.2e-79 268.6 0.1 1.5e-79 268.2 0.1 1.1 1 0 0 1 1 1 1 Asparagine synthase GATase_7 PF13537.6 EME69125.1 - 1.3e-43 147.8 0.0 3.3e-43 146.5 0.0 1.7 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_6 PF13522.6 EME69125.1 - 5.4e-42 143.2 0.0 3.6e-41 140.5 0.0 2.1 2 0 0 2 2 2 1 Glutamine amidotransferase domain DUF3700 PF12481.8 EME69125.1 - 0.0014 18.2 0.0 0.0027 17.2 0.0 1.4 1 0 0 1 1 1 1 Aluminium induced protein NAD_synthase PF02540.17 EME69125.1 - 0.035 13.2 0.0 0.06 12.5 0.0 1.3 1 0 0 1 1 1 0 NAD synthase tRNA_Me_trans PF03054.16 EME69125.1 - 0.061 12.1 0.0 0.082 11.7 0.0 1.1 1 0 0 1 1 1 0 tRNA methyl transferase GFO_IDH_MocA PF01408.22 EME69126.1 - 4.1e-22 79.2 0.0 7.1e-22 78.5 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold F420_oxidored PF03807.17 EME69126.1 - 0.0047 17.5 0.0 0.01 16.4 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA_C PF02894.17 EME69126.1 - 0.0069 16.4 0.0 0.016 15.2 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain Peripla_BP_1 PF00532.21 EME69126.1 - 0.013 15.0 0.0 0.019 14.4 0.0 1.2 1 0 0 1 1 1 0 Periplasmic binding proteins and sugar binding domain of LacI family 2-Hacid_dh_C PF02826.19 EME69126.1 - 0.076 12.4 0.0 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_3 PF03447.16 EME69126.1 - 0.082 13.6 0.1 0.13 13.0 0.1 1.3 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain DUF4684 PF15736.5 EME69126.1 - 0.39 9.4 2.4 0.98 8.0 1.2 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4684) Epimerase PF01370.21 EME69127.1 - 3.2e-43 147.9 0.0 4.1e-43 147.6 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 EME69127.1 - 2.5e-30 106.0 0.0 3.3e-30 105.6 0.0 1.1 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 EME69127.1 - 1.2e-12 47.5 0.0 2.3e-12 46.5 0.0 1.4 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.12 EME69127.1 - 2e-07 30.5 0.0 2.5e-05 23.6 0.0 2.2 2 0 0 2 2 2 2 Male sterility protein RmlD_sub_bind PF04321.17 EME69127.1 - 0.0011 18.2 0.0 0.0017 17.5 0.0 1.3 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 EME69127.1 - 0.0021 17.2 0.0 0.86 8.7 0.0 2.4 2 1 0 2 2 2 2 Polysaccharide biosynthesis protein Methyltransf_14 PF08484.11 EME69128.1 - 5.8e-51 172.5 0.0 7.8e-51 172.1 0.0 1.2 1 0 0 1 1 1 1 C-methyltransferase C-terminal domain Methyltransf_13 PF08421.11 EME69128.1 - 5.9e-21 74.5 1.0 9.4e-21 73.8 1.0 1.3 1 0 0 1 1 1 1 Putative zinc binding domain Methyltransf_23 PF13489.6 EME69128.1 - 3.4e-13 49.7 0.0 5.7e-13 49.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 EME69128.1 - 1.6e-07 32.0 0.0 3.8e-07 30.8 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 EME69128.1 - 7.5e-07 29.7 0.0 2e-06 28.3 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 EME69128.1 - 1.4e-05 25.7 0.1 3e-05 24.6 0.1 1.6 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 EME69128.1 - 0.002 17.8 0.0 0.0033 17.0 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_31 PF13847.6 EME69128.1 - 0.038 13.8 0.0 0.097 12.5 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain Cupin_2 PF07883.11 EME69129.1 - 5.3e-07 29.3 0.1 8.1e-07 28.7 0.1 1.3 1 0 0 1 1 1 1 Cupin domain Cupin_3 PF05899.12 EME69129.1 - 0.0054 16.4 0.0 0.0083 15.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) Cupin_1 PF00190.22 EME69129.1 - 0.1 12.2 0.0 0.13 11.9 0.0 1.2 1 0 0 1 1 1 0 Cupin Glycos_transf_2 PF00535.26 EME69130.1 - 1.7e-31 109.3 0.3 2.3e-31 108.9 0.3 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 EME69130.1 - 1.4e-11 44.7 0.1 1.9e-11 44.3 0.1 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 EME69130.1 - 4.4e-05 23.9 0.0 0.0001 22.7 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.9 EME69130.1 - 0.00018 21.1 0.0 0.00026 20.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 EME69130.1 - 0.0032 17.0 0.0 0.0047 16.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_trans_1_4 PF13692.6 EME69131.1 - 8.1e-27 94.3 0.0 1.4e-26 93.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 EME69131.1 - 2e-26 92.5 0.0 3e-26 92.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 EME69131.1 - 3.9e-08 33.6 0.0 1e-07 32.2 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 EME69131.1 - 3.8e-07 30.3 1.5 6.2e-07 29.6 0.8 1.7 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 EME69131.1 - 0.00056 20.4 11.0 0.00056 20.4 11.0 2.8 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Methyltransf_11 PF08241.12 EME69132.1 - 1.9e-17 63.7 0.1 3e-17 63.1 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 EME69132.1 - 6.6e-15 55.6 0.1 1.1e-14 54.8 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 EME69132.1 - 1.4e-11 44.4 0.0 2.1e-11 43.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 EME69132.1 - 1.9e-10 41.4 0.0 3.4e-10 40.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 EME69132.1 - 1.2e-09 38.2 0.0 1.7e-09 37.7 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_9 PF08003.11 EME69132.1 - 8e-08 31.6 0.0 1.2e-07 31.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Trm112p PF03966.16 EME69132.1 - 1.3e-05 25.7 0.1 2.8e-05 24.6 0.1 1.6 1 0 0 1 1 1 1 Trm112p-like protein FtsJ PF01728.19 EME69132.1 - 0.00057 20.0 0.0 0.00089 19.4 0.0 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase Ubie_methyltran PF01209.18 EME69132.1 - 0.00073 18.9 0.0 0.001 18.5 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.14 EME69132.1 - 0.0012 18.5 0.0 0.0019 17.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PhnA_Zn_Ribbon PF08274.12 EME69132.1 - 0.0083 16.1 2.7 0.036 14.0 0.2 2.4 2 0 0 2 2 2 1 PhnA Zinc-Ribbon NodS PF05401.11 EME69132.1 - 0.046 13.3 0.0 0.074 12.7 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) DREV PF05219.12 EME69132.1 - 0.16 11.1 0.0 0.2 10.7 0.0 1.2 1 0 0 1 1 1 0 DREV methyltransferase Polysacc_synt_3 PF13440.6 EME69133.1 - 2.8e-15 56.3 4.9 4.8e-15 55.6 4.9 1.4 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein Polysacc_synt PF01943.17 EME69133.1 - 9.7e-08 31.7 11.5 9.7e-08 31.7 11.5 2.4 1 1 1 2 2 2 2 Polysaccharide biosynthesis protein Epimerase PF01370.21 EME69134.1 - 5.1e-27 94.9 0.0 6.3e-27 94.6 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 EME69134.1 - 3.2e-19 69.1 0.0 4.2e-19 68.7 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 EME69134.1 - 2.7e-15 56.1 0.0 3.4e-12 46.0 0.0 2.0 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.12 EME69134.1 - 4.5e-15 55.5 0.0 4.5e-11 42.4 0.0 2.2 2 0 0 2 2 2 2 Male sterility protein GDP_Man_Dehyd PF16363.5 EME69134.1 - 5e-13 49.2 0.0 1.1e-05 25.0 0.0 2.9 2 1 1 3 3 3 2 GDP-mannose 4,6 dehydratase NAD_binding_10 PF13460.6 EME69134.1 - 2e-10 40.8 0.8 7.2e-09 35.8 0.8 2.2 1 1 0 1 1 1 1 NAD(P)H-binding Polysacc_synt_2 PF02719.15 EME69134.1 - 0.00048 19.4 0.3 0.39 9.8 0.0 2.4 1 1 1 2 2 2 2 Polysaccharide biosynthesis protein Glycos_transf_4 PF00953.21 EME69135.1 - 1.6e-21 76.9 9.0 1.6e-21 76.9 9.0 2.3 2 0 0 2 2 2 1 Glycosyl transferase family 4 ABC2_membrane_3 PF12698.7 EME69135.1 - 4 6.5 5.6 5.3 6.1 5.6 1.2 1 0 0 1 1 1 0 ABC-2 family transporter protein SLATT_1 PF18181.1 EME69135.1 - 9.1 6.2 8.9 5.1 7.1 4.8 2.5 2 0 0 2 2 2 0 SMODS and SLOG-associating 2TM effector domain 1 GFO_IDH_MocA PF01408.22 EME69136.1 - 1.2e-16 61.7 1.0 1.9e-14 54.5 0.1 2.7 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold ADH_zinc_N PF00107.26 EME69136.1 - 1.8e-16 60.3 0.1 4.4e-16 59.0 0.1 1.6 1 0 0 1 1 1 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.21 EME69136.1 - 0.00011 21.6 1.5 0.00027 20.3 1.5 1.7 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain UDPG_MGDP_dh_N PF03721.14 EME69136.1 - 0.0019 17.8 0.2 0.0033 17.0 0.2 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ADH_zinc_N_2 PF13602.6 EME69136.1 - 0.0028 18.7 0.3 0.018 16.1 0.0 2.6 3 1 0 3 3 3 1 Zinc-binding dehydrogenase TrkA_N PF02254.18 EME69136.1 - 0.0079 16.5 0.3 0.036 14.3 0.2 2.2 2 0 0 2 2 2 1 TrkA-N domain NAD_binding_3 PF03447.16 EME69136.1 - 0.024 15.3 1.1 0.079 13.6 0.2 2.2 2 0 0 2 2 2 0 Homoserine dehydrogenase, NAD binding domain GFO_IDH_MocA_C PF02894.17 EME69136.1 - 0.028 14.4 0.0 0.056 13.5 0.0 1.5 1 0 0 1 1 1 0 Oxidoreductase family, C-terminal alpha/beta domain ApbA PF02558.16 EME69136.1 - 0.1 12.2 0.1 0.25 11.0 0.1 1.7 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA 2-Hacid_dh_C PF02826.19 EME69136.1 - 0.14 11.5 0.5 0.63 9.4 0.1 2.2 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Shikimate_DH PF01488.20 EME69136.1 - 1 9.4 2.6 13 5.9 0.1 2.8 3 0 0 3 3 3 0 Shikimate / quinate 5-dehydrogenase UDPG_MGDP_dh_C PF03720.15 EME69137.1 - 3.6e-18 65.9 0.0 4.8e-18 65.5 0.0 1.1 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain UDPG_MGDP_dh PF00984.19 EME69137.1 - 0.00012 22.2 0.0 0.00023 21.3 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain Glyco_transf_4 PF13439.6 EME69137.1 - 0.024 14.6 0.0 0.65 10.0 0.0 2.1 2 0 0 2 2 2 0 Glycosyltransferase Family 4 PASTA PF03793.19 EME69137.1 - 0.18 11.7 0.0 0.33 10.9 0.0 1.4 1 0 0 1 1 1 0 PASTA domain LptF_LptG PF03739.14 EME69139.1 - 4.2e-65 219.9 5.7 4.8e-65 219.7 5.7 1.0 1 0 0 1 1 1 1 Lipopolysaccharide export system permease LptF/LptG FAD-oxidase_C PF02913.19 EME69140.1 - 3.9e-56 190.5 0.0 5.3e-56 190.0 0.0 1.2 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 EME69140.1 - 1.6e-34 118.7 2.8 3.7e-34 117.4 2.8 1.6 1 0 0 1 1 1 1 FAD binding domain Sua5_yciO_yrdC PF01300.18 EME69141.1 - 7.1e-57 191.8 0.0 8.9e-57 191.5 0.0 1.1 1 0 0 1 1 1 1 Telomere recombination SUA5 PF03481.13 EME69141.1 - 1e-23 84.4 0.1 5e-23 82.1 0.1 2.0 1 1 0 1 1 1 1 Putative GTP-binding controlling metal-binding BrnA_antitoxin PF14384.6 EME69142.1 - 1.1e-16 61.0 0.0 1.7e-16 60.4 0.0 1.3 1 1 0 1 1 1 1 BrnA antitoxin of type II toxin-antitoxin system WYL PF13280.6 EME69142.1 - 0.025 14.6 0.0 0.028 14.5 0.0 1.1 1 0 0 1 1 1 0 WYL domain DUF3022 PF11226.8 EME69142.1 - 0.063 13.7 0.0 0.079 13.4 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3022) DUF2325 PF10087.9 EME69143.1 - 2.1e-23 82.2 0.0 4.8e-23 81.1 0.0 1.7 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2325) Filament PF00038.21 EME69143.1 - 0.01 15.5 15.5 0.016 14.8 15.5 1.2 1 0 0 1 1 1 1 Intermediate filament protein HIP1_clath_bdg PF16515.5 EME69143.1 - 0.14 12.8 14.2 1.6 9.4 2.5 2.5 1 1 1 2 2 2 0 Clathrin-binding domain of Huntingtin-interacting protein 1 KELK PF15796.5 EME69143.1 - 0.22 12.0 9.6 2.1 8.9 0.8 2.5 2 0 0 2 2 2 0 KELK-motif containing domain of MRCK Ser/Thr protein kinase DUF641 PF04859.12 EME69143.1 - 0.25 11.7 9.3 3.3 8.1 1.4 2.4 1 1 1 2 2 2 0 Plant protein of unknown function (DUF641) JAKMIP_CC3 PF16034.5 EME69143.1 - 0.28 11.1 9.6 0.56 10.1 9.6 1.4 1 0 0 1 1 1 0 JAKMIP CC3 domain Rho_Binding PF08912.11 EME69143.1 - 0.31 11.9 6.4 2.1 9.2 1.9 2.7 2 1 1 3 3 3 0 Rho Binding V_ATPase_I PF01496.19 EME69143.1 - 0.43 8.5 0.4 0.53 8.1 0.4 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Fungal_TACC PF12709.7 EME69143.1 - 0.7 10.4 4.8 1.2 9.6 0.7 2.6 2 1 1 3 3 3 0 Fungal Transforming acidic coiled-coil (TACC) proteins PRKG1_interact PF15898.5 EME69143.1 - 0.88 10.5 10.8 6.3 7.8 0.3 2.6 1 1 1 2 2 2 0 cGMP-dependent protein kinase interacting domain DUF4407 PF14362.6 EME69143.1 - 3 7.1 14.3 4.7 6.5 14.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) Fez1 PF06818.15 EME69143.1 - 3.2 8.1 12.7 2.9 8.3 0.6 2.2 1 1 1 2 2 2 0 Fez1 AAA_13 PF13166.6 EME69143.1 - 7.9 5.0 6.7 18 3.8 6.6 1.6 1 1 0 1 1 1 0 AAA domain Hemerythrin PF01814.23 EME69144.1 - 2.8e-14 53.8 1.5 4.4e-14 53.2 1.5 1.3 1 0 0 1 1 1 1 Hemerythrin HHE cation binding domain Acetyltransf_1 PF00583.25 EME69145.1 - 3.8e-09 36.8 0.1 5.4e-09 36.3 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.7 EME69145.1 - 3e-05 24.7 0.0 3.8e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 EME69145.1 - 3.5e-05 23.8 0.0 6.3e-05 22.9 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 EME69145.1 - 0.00023 21.5 0.0 0.0004 20.8 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 EME69145.1 - 0.012 15.7 0.0 0.036 14.2 0.0 1.8 2 0 0 2 2 2 0 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.7 EME69145.1 - 0.15 12.1 0.1 0.9 9.6 0.0 2.1 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 EME69145.1 - 0.21 11.7 0.0 0.3 11.2 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain tRNA-synt_2c PF01411.19 EME69146.1 - 2.5e-213 709.6 0.0 3e-213 709.3 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) DHHA1 PF02272.19 EME69146.1 - 1.3e-19 71.0 4.0 3.2e-19 69.7 4.0 1.8 1 0 0 1 1 1 1 DHHA1 domain tRNA_SAD PF07973.14 EME69146.1 - 7e-18 64.5 0.3 1.9e-17 63.0 0.3 1.8 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain DUF2249 PF10006.9 EME69147.1 - 1.1e-30 105.2 0.1 1.2e-30 105.1 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) Cytochrom_C_2 PF01322.20 EME69148.1 - 0.00075 20.4 0.1 0.0034 18.3 0.0 1.8 1 1 1 2 2 2 1 Cytochrome C' Htr2 PF17909.1 EME69148.1 - 0.052 13.8 1.1 0.052 13.8 1.1 2.7 2 1 1 3 3 3 0 Htr2 transmembrane domain SNase PF00565.17 EME69149.1 - 0.0025 18.3 0.0 0.0036 17.7 0.0 1.3 1 0 0 1 1 1 1 Staphylococcal nuclease homologue Glyco_transf_4 PF13439.6 EME69151.1 - 1.2e-18 67.7 2.6 8e-18 65.0 1.9 2.5 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.6 EME69151.1 - 8.2e-15 55.4 0.1 1.4e-14 54.6 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 EME69151.1 - 6.8e-14 51.8 0.0 5.6e-13 48.8 0.0 2.0 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 EME69151.1 - 2.5e-08 34.5 4.1 2.5e-08 34.5 4.1 2.8 2 2 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 EME69151.1 - 0.043 14.2 0.0 0.13 12.7 0.0 1.9 2 1 0 2 2 2 0 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 EME69151.1 - 0.13 12.2 0.0 0.26 11.3 0.0 1.6 1 0 0 1 1 1 0 Glycosyl transferase 4-like Asp_Glu_race PF01177.22 EME69152.1 - 5.5e-24 85.3 0.0 7.1e-24 84.9 0.0 1.2 1 0 0 1 1 1 1 Asp/Glu/Hydantoin racemase FIST PF08495.10 EME69152.1 - 0.16 11.9 0.4 0.24 11.4 0.4 1.4 1 1 0 1 1 1 0 FIST N domain sCache_3_2 PF17203.4 EME69153.1 - 0.012 15.7 0.1 0.021 15.0 0.1 1.4 1 0 0 1 1 1 0 Single cache domain 3 MFS_1 PF07690.16 EME69154.1 - 4.6e-32 111.3 33.1 4.6e-32 111.3 33.1 2.3 1 1 1 2 2 2 2 Major Facilitator Superfamily sCache_3_2 PF17203.4 EME69154.1 - 1.6e-06 28.3 0.0 3.1e-06 27.4 0.0 1.5 1 0 0 1 1 1 1 Single cache domain 3 LacY_symp PF01306.19 EME69154.1 - 5.1e-05 22.2 2.8 7.9e-05 21.6 1.4 1.9 2 0 0 2 2 2 1 LacY proton/sugar symporter MFS_1_like PF12832.7 EME69154.1 - 6e-05 22.1 3.8 0.00015 20.7 2.6 2.2 2 0 0 2 2 2 1 MFS_1 like family HAMP PF00672.25 EME69154.1 - 0.00011 22.5 0.0 0.00041 20.7 0.0 2.0 2 0 0 2 2 2 1 HAMP domain Sugar_tr PF00083.24 EME69154.1 - 0.00019 20.5 15.5 0.00019 20.5 15.5 2.9 2 1 0 2 2 2 1 Sugar (and other) transporter BT1 PF03092.16 EME69154.1 - 0.28 9.4 10.1 0.0052 15.1 3.1 1.6 2 0 0 2 2 2 0 BT1 family ABC_sub_bind PF04392.12 EME69155.1 - 1.9e-28 99.5 0.0 2.5e-28 99.2 0.0 1.1 1 0 0 1 1 1 1 ABC transporter substrate binding protein Peripla_BP_6 PF13458.6 EME69155.1 - 3.6e-05 23.6 0.5 6.6e-05 22.7 0.5 1.3 1 1 0 1 1 1 1 Periplasmic binding protein Formyl_trans_N PF00551.19 EME69156.1 - 5.1e-16 58.9 0.0 9.3e-16 58.1 0.0 1.3 1 0 0 1 1 1 1 Formyl transferase SpoIIE PF07228.12 EME69157.1 - 8.5e-50 169.4 0.1 1.5e-49 168.6 0.1 1.4 1 0 0 1 1 1 1 Stage II sporulation protein E (SpoIIE) HATPase_c_2 PF13581.6 EME69157.1 - 4.1e-21 75.2 0.0 7.5e-21 74.4 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HAMP PF00672.25 EME69157.1 - 1.1e-07 32.1 0.3 0.00014 22.2 0.1 2.8 2 0 0 2 2 2 2 HAMP domain dCache_3 PF14827.6 EME69157.1 - 1.2e-06 28.4 0.2 1.2e-06 28.4 0.2 3.0 3 1 0 3 3 3 1 Double sensory domain of two-component sensor kinase PAS_4 PF08448.10 EME69157.1 - 6.5e-05 23.2 0.1 0.0022 18.2 0.0 2.9 2 0 0 2 2 2 1 PAS fold Cache_3-Cache_2 PF17201.4 EME69157.1 - 0.0059 15.9 0.2 0.046 13.0 0.0 2.3 3 0 0 3 3 3 1 Cache 3/Cache 2 fusion domain PAS_9 PF13426.7 EME69157.1 - 0.081 13.2 0.0 0.63 10.3 0.0 2.4 2 0 0 2 2 2 0 PAS domain FUSC PF04632.12 EME69157.1 - 0.18 10.3 6.9 0.38 9.2 6.9 1.5 1 0 0 1 1 1 0 Fusaric acid resistance protein family STAS_2 PF13466.6 EME69158.1 - 8.7e-10 38.8 0.0 1.2e-09 38.3 0.0 1.2 1 0 0 1 1 1 1 STAS domain STAS PF01740.21 EME69158.1 - 8.5e-08 31.8 0.0 9.5e-08 31.7 0.0 1.1 1 0 0 1 1 1 1 STAS domain Phasin_2 PF09361.10 EME69159.1 - 0.097 12.9 0.0 0.11 12.7 0.0 1.1 1 0 0 1 1 1 0 Phasin protein FTSW_RODA_SPOVE PF01098.19 EME69160.1 - 2.4e-100 336.0 28.8 3e-100 335.7 28.8 1.0 1 0 0 1 1 1 1 Cell cycle protein Vma12 PF11712.8 EME69160.1 - 0.11 12.6 0.9 0.18 11.8 0.1 1.8 2 0 0 2 2 2 0 Endoplasmic reticulum-based factor for assembly of V-ATPase DUF4231 PF14015.6 EME69160.1 - 4.3 7.9 7.2 0.71 10.4 0.3 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF4231) Transpeptidase PF00905.22 EME69161.1 - 3.1e-74 249.9 0.0 3.9e-74 249.6 0.0 1.1 1 0 0 1 1 1 1 Penicillin binding protein transpeptidase domain PBP_dimer PF03717.15 EME69161.1 - 4.8e-38 131.3 0.0 1e-37 130.3 0.0 1.6 1 0 0 1 1 1 1 Penicillin-binding Protein dimerisation domain AAA_28 PF13521.6 EME69161.1 - 0.012 15.9 0.1 0.69 10.1 0.0 3.0 2 1 0 2 2 2 0 AAA domain MreD PF04093.12 EME69162.1 - 1.1e-10 41.8 11.6 1.5e-10 41.4 11.6 1.2 1 0 0 1 1 1 1 rod shape-determining protein MreD CrgA PF06781.12 EME69162.1 - 2.6 8.2 6.3 1.4 9.0 2.5 2.5 2 1 1 3 3 3 0 Cell division protein CrgA MreC PF04085.14 EME69163.1 - 7.2e-31 107.1 0.1 1.1e-30 106.5 0.1 1.3 1 0 0 1 1 1 1 rod shape-determining protein MreC PRKG1_interact PF15898.5 EME69163.1 - 0.0023 18.8 0.2 0.0047 17.8 0.2 1.5 1 0 0 1 1 1 1 cGMP-dependent protein kinase interacting domain DHR10 PF18595.1 EME69163.1 - 0.048 13.7 0.3 0.065 13.3 0.3 1.2 1 0 0 1 1 1 0 Designed helical repeat protein 10 domain XRCC4 PF06632.12 EME69163.1 - 0.083 11.7 0.2 0.12 11.2 0.2 1.1 1 0 0 1 1 1 0 DNA double-strand break repair and V(D)J recombination protein XRCC4 ZapB PF06005.12 EME69163.1 - 0.14 12.6 1.0 0.27 11.7 1.0 1.4 1 0 0 1 1 1 0 Cell division protein ZapB MreB_Mbl PF06723.13 EME69164.1 - 5.1e-153 508.7 7.3 5.8e-153 508.5 7.3 1.0 1 0 0 1 1 1 1 MreB/Mbl protein Actin PF00022.19 EME69164.1 - 2.3e-13 49.5 0.0 2.7e-11 42.7 0.0 2.1 2 0 0 2 2 2 2 Actin FtsA PF14450.6 EME69164.1 - 1.9e-12 47.5 1.9 3.4e-12 46.7 0.2 2.1 2 1 0 2 2 2 1 Cell division protein FtsA HSP70 PF00012.20 EME69164.1 - 5.9e-12 44.6 0.5 1.1e-11 43.7 0.1 1.8 2 1 0 2 2 2 1 Hsp70 protein PilM_2 PF11104.8 EME69164.1 - 2.8e-08 33.2 0.0 0.0026 16.9 0.0 3.0 3 0 0 3 3 3 2 Type IV pilus assembly protein PilM; EutA PF06277.11 EME69164.1 - 0.0018 17.2 0.3 0.0018 17.2 0.3 1.8 3 0 0 3 3 3 1 Ethanolamine utilisation protein EutA U79_P34 PF03064.16 EME69164.1 - 0.0062 15.9 0.2 1.8 7.9 0.0 2.1 2 0 0 2 2 2 2 HSV U79 / HCMV P34 HMGL-like PF00682.19 EME69165.1 - 1.1e-96 323.4 0.8 1.7e-96 322.8 0.8 1.3 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.10 EME69165.1 - 2.9e-38 130.8 0.2 7.4e-38 129.5 0.2 1.7 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain DUF4351 PF14261.6 EME69166.1 - 0.047 13.8 0.0 0.095 12.8 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4351) DUF2461 PF09365.10 EME69167.1 - 3.3e-46 157.9 0.0 3.7e-46 157.7 0.0 1.0 1 0 0 1 1 1 1 Conserved hypothetical protein (DUF2461) IlvN PF07991.12 EME69168.1 - 8.3e-71 236.9 1.4 1.2e-70 236.4 1.4 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain IlvC PF01450.19 EME69168.1 - 3.2e-66 222.0 0.1 4.3e-66 221.6 0.1 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain AdoHcyase_NAD PF00670.21 EME69168.1 - 1.1e-05 25.5 0.1 1.9e-05 24.8 0.1 1.3 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.19 EME69168.1 - 2.7e-05 23.6 0.0 4.6e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 EME69168.1 - 0.0002 21.6 0.1 0.00036 20.8 0.1 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 EME69168.1 - 0.00044 20.8 0.1 0.00079 20.0 0.1 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Oxidored_nitro PF00148.19 EME69168.1 - 0.025 13.3 0.1 0.05 12.3 0.1 1.4 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase Shikimate_DH PF01488.20 EME69168.1 - 0.028 14.5 0.1 0.05 13.7 0.1 1.3 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase DUF1103 PF06513.11 EME69168.1 - 0.031 13.9 0.0 0.05 13.2 0.0 1.2 1 0 0 1 1 1 0 Repeat of unknown function (DUF1103) ThiF PF00899.21 EME69168.1 - 0.051 12.9 0.0 0.25 10.6 0.0 1.9 2 0 0 2 2 2 0 ThiF family NT5C PF06941.12 EME69168.1 - 0.052 13.4 0.0 0.082 12.8 0.0 1.3 1 0 0 1 1 1 0 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) GFO_IDH_MocA PF01408.22 EME69168.1 - 0.067 14.0 0.1 0.13 13.1 0.1 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_7 PF13241.6 EME69168.1 - 0.076 13.5 0.1 0.23 11.9 0.1 1.8 1 0 0 1 1 1 0 Putative NAD(P)-binding ALS_ss_C PF10369.9 EME69169.1 - 2.1e-25 88.7 0.5 2.1e-25 88.7 0.5 2.0 2 1 0 2 2 2 1 Small subunit of acetolactate synthase ACT_5 PF13710.6 EME69169.1 - 1.8e-11 43.7 0.4 3.6e-11 42.7 0.1 1.7 2 0 0 2 2 2 1 ACT domain ACT PF01842.25 EME69169.1 - 3.7e-09 36.2 1.1 6.2e-09 35.5 0.3 1.8 2 0 0 2 2 2 1 ACT domain ACT_4 PF13291.6 EME69169.1 - 0.034 14.8 0.3 0.075 13.6 0.3 1.6 1 1 0 1 1 1 0 ACT domain Glycoprotein PF03409.15 EME69169.1 - 0.075 11.9 0.0 0.099 11.5 0.0 1.1 1 0 0 1 1 1 0 Transmembrane glycoprotein tRNA_NucTran2_2 PF13735.6 EME69169.1 - 0.24 11.4 1.1 0.61 10.1 0.1 1.9 2 0 0 2 2 2 0 tRNA nucleotidyltransferase domain 2 putative TPP_enzyme_N PF02776.18 EME69170.1 - 2.9e-60 202.8 0.3 1e-58 197.8 0.1 2.2 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 EME69170.1 - 2.6e-49 166.9 0.1 2.5e-48 163.7 0.1 2.2 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.22 EME69170.1 - 4.1e-46 156.1 0.0 8.6e-46 155.1 0.0 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain CO_dh PF02552.16 EME69170.1 - 0.1 12.4 0.0 0.21 11.3 0.0 1.4 1 0 0 1 1 1 0 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit IPPT PF01715.17 EME69171.1 - 7.6e-62 209.1 0.0 9.4e-62 208.8 0.0 1.0 1 0 0 1 1 1 1 IPP transferase IPT PF01745.16 EME69171.1 - 7.1e-06 25.6 0.0 1.1e-05 24.9 0.0 1.3 1 0 0 1 1 1 1 Isopentenyl transferase AAA_33 PF13671.6 EME69171.1 - 0.0013 18.9 0.0 0.0044 17.2 0.0 1.9 2 0 0 2 2 2 1 AAA domain Cytidylate_kin PF02224.18 EME69171.1 - 0.016 15.0 0.0 0.027 14.2 0.0 1.4 1 0 0 1 1 1 0 Cytidylate kinase CobU PF02283.16 EME69171.1 - 0.031 13.8 0.0 1.4 8.5 0.0 2.4 2 0 0 2 2 2 0 Cobinamide kinase / cobinamide phosphate guanyltransferase Zeta_toxin PF06414.12 EME69171.1 - 0.047 13.0 0.0 0.086 12.1 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_16 PF13191.6 EME69171.1 - 0.094 13.1 0.2 0.59 10.5 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain Hydin_ADK PF17213.3 EME69171.1 - 0.18 12.0 0.1 0.34 11.1 0.1 1.4 1 0 0 1 1 1 0 Hydin Adenylate kinase-like domain NTP_transf_2 PF01909.23 EME69172.1 - 1.5e-05 25.2 0.3 1.6e-05 25.1 0.3 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 EME69172.1 - 0.0015 18.6 0.2 0.0051 16.9 0.1 1.7 1 1 1 2 2 2 1 Polymerase beta, Nucleotidyltransferase NTP_transf_5 PF14907.6 EME69172.1 - 0.094 12.3 0.1 0.094 12.3 0.1 1.1 1 0 0 1 1 1 0 Uncharacterised nucleotidyltransferase NnrS PF05940.12 EME69173.1 - 1.4e-60 205.6 47.4 1.7e-60 205.4 47.4 1.0 1 0 0 1 1 1 1 NnrS protein IncD PF17628.2 EME69173.1 - 4.8 7.0 6.5 0.27 11.0 0.2 2.2 3 1 0 3 3 3 0 Inclusion membrane protein D TPR_2 PF07719.17 EME69175.1 - 0.01 15.9 0.8 6.6 7.1 0.0 3.9 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_6 PF13174.6 EME69175.1 - 0.056 14.1 4.6 1.9 9.3 0.0 4.7 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_16 PF13432.6 EME69175.1 - 0.15 12.7 0.1 1 10.1 0.0 5.2 4 1 0 5 5 5 0 Tetratricopeptide repeat TPR_9 PF13371.6 EME69175.1 - 0.35 11.1 11.2 10 6.4 1.0 5.3 5 1 1 6 6 6 0 Tetratricopeptide repeat AMP-binding PF00501.28 EME69176.1 - 2.3e-20 72.6 0.0 2.6e-20 72.4 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme Glyco_hydro_114 PF03537.13 EME69177.1 - 0.012 15.0 0.0 0.022 14.1 0.0 1.4 1 0 0 1 1 1 0 Glycoside-hydrolase family GH114 DAO PF01266.24 EME69178.1 - 3.8e-62 210.9 9.0 4.3e-62 210.7 9.0 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 EME69178.1 - 8.1e-07 29.2 1.6 2.1e-06 27.8 1.6 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 EME69178.1 - 3.7e-05 23.1 3.4 8.1e-05 22.0 2.0 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 EME69178.1 - 0.00011 21.5 2.4 0.00018 20.7 2.4 1.5 1 0 0 1 1 1 1 FAD binding domain Thi4 PF01946.17 EME69178.1 - 0.00012 21.4 1.6 0.00025 20.4 1.6 1.4 1 0 0 1 1 1 1 Thi4 family HI0933_like PF03486.14 EME69178.1 - 0.00021 20.1 3.9 0.011 14.5 3.3 2.1 2 0 0 2 2 2 1 HI0933-like protein Amino_oxidase PF01593.24 EME69178.1 - 0.00022 20.7 0.6 0.00033 20.1 0.6 1.2 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase Pyr_redox PF00070.27 EME69178.1 - 0.0015 19.0 2.3 0.0028 18.2 2.3 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 EME69178.1 - 0.0038 16.5 1.6 0.0067 15.8 1.6 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox_3 PF13738.6 EME69178.1 - 0.0078 15.5 2.9 0.014 14.7 2.9 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.6 EME69178.1 - 0.01 16.3 0.4 0.016 15.6 0.4 1.3 1 0 0 1 1 1 0 Putative NAD(P)-binding TrkA_N PF02254.18 EME69178.1 - 0.012 15.9 0.2 0.026 14.8 0.2 1.6 1 0 0 1 1 1 0 TrkA-N domain 3HCDH_N PF02737.18 EME69178.1 - 0.016 15.1 1.7 0.026 14.4 1.7 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 EME69178.1 - 0.023 14.3 1.1 0.035 13.7 1.1 1.2 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ApbA PF02558.16 EME69178.1 - 0.033 13.8 0.8 0.056 13.1 0.8 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA FAD_binding_3 PF01494.19 EME69178.1 - 0.034 13.4 3.9 0.059 12.6 3.9 1.3 1 0 0 1 1 1 0 FAD binding domain FAD_oxidored PF12831.7 EME69178.1 - 0.098 12.0 6.4 0.027 13.8 3.5 1.5 2 0 0 2 2 2 0 FAD dependent oxidoreductase NAD_binding_9 PF13454.6 EME69178.1 - 0.11 12.5 1.0 1.5 8.7 0.4 2.2 2 0 0 2 2 2 0 FAD-NAD(P)-binding GIDA PF01134.22 EME69178.1 - 0.26 10.3 3.0 0.38 9.8 3.0 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A NAD_binding_2 PF03446.15 EME69178.1 - 0.29 11.3 4.1 0.11 12.6 0.4 1.9 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase Lycopene_cycl PF05834.12 EME69178.1 - 1.1 8.2 6.2 0.44 9.5 3.6 1.6 2 0 0 2 2 2 0 Lycopene cyclase protein Rossmann-like PF10727.9 EME69178.1 - 1.2 9.0 8.9 0.15 12.0 2.3 2.6 3 1 0 3 3 3 0 Rossmann-like domain Molybdopterin PF00384.22 EME69179.1 - 6e-51 173.8 0.0 3.8e-50 171.1 0.0 1.9 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 EME69179.1 - 2e-15 56.8 0.0 4.3e-15 55.7 0.0 1.6 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 EME69179.1 - 0.00098 19.1 0.6 0.0019 18.2 0.6 1.5 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain MipZ PF09140.11 EME69180.1 - 5.1e-118 393.1 0.1 5.7e-118 392.9 0.1 1.0 1 0 0 1 1 1 1 ATPase MipZ CbiA PF01656.23 EME69180.1 - 6.3e-10 39.2 0.0 1.4e-09 38.1 0.0 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 EME69180.1 - 2.8e-09 37.1 0.0 1.6e-06 28.2 0.0 2.3 2 0 0 2 2 2 2 AAA domain ParA PF10609.9 EME69180.1 - 1e-07 31.7 0.3 1.9e-07 30.8 0.0 1.6 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase LpxK PF02606.14 EME69180.1 - 0.0033 16.6 0.2 0.0053 15.9 0.2 1.2 1 0 0 1 1 1 1 Tetraacyldisaccharide-1-P 4'-kinase CLP1_P PF16575.5 EME69180.1 - 0.0099 15.7 0.0 0.18 11.6 0.0 2.3 2 0 0 2 2 2 1 mRNA cleavage and polyadenylation factor CLP1 P-loop FtsK_SpoIIIE PF01580.18 EME69180.1 - 0.034 13.5 0.5 0.065 12.6 0.5 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family MeaB PF03308.16 EME69180.1 - 0.046 12.7 0.2 0.12 11.4 0.3 1.7 2 1 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB VirC1 PF07015.11 EME69180.1 - 0.048 12.9 0.0 0.11 11.8 0.0 1.7 1 1 0 1 1 1 0 VirC1 protein APS_kinase PF01583.20 EME69180.1 - 0.077 12.9 0.1 0.14 12.1 0.1 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase zf-dskA_traR PF01258.17 EME69181.1 - 2.8e-12 46.3 0.4 4.1e-12 45.8 0.4 1.3 1 0 0 1 1 1 1 Prokaryotic dksA/traR C4-type zinc finger FliX PF10768.9 EME69182.1 - 1.2e-45 155.4 3.7 1.3e-45 155.2 3.7 1.0 1 0 0 1 1 1 1 Class II flagellar assembly regulator RsmF_methylt_CI PF17126.5 EME69182.1 - 0.084 12.9 0.1 0.16 12.0 0.1 1.5 1 0 0 1 1 1 0 RsmF rRNA methyltransferase first C-terminal domain FlgI PF02119.16 EME69183.1 - 1.9e-137 457.8 8.0 2.2e-137 457.6 8.0 1.0 1 0 0 1 1 1 1 Flagellar P-ring protein SH3_12 PF18129.1 EME69183.1 - 0.068 13.3 0.3 0.21 11.7 0.3 1.8 1 0 0 1 1 1 0 Xrn1 SH3-like domain Rod-binding PF10135.9 EME69184.1 - 2.3e-10 40.9 7.7 9.7e-10 38.9 2.9 2.2 1 1 1 2 2 2 2 Rod binding protein FlgN PF05130.12 EME69185.1 - 3.7e-05 24.3 1.0 0.00092 19.7 1.0 2.1 1 1 0 1 1 1 1 FlgN protein Flg_bbr_C PF06429.13 EME69186.1 - 3.7e-14 52.6 1.3 3.7e-14 52.6 1.3 3.4 3 0 0 3 3 3 1 Flagellar basal body rod FlgEFG protein C-terminal Flagellin_IN PF07196.13 EME69186.1 - 3.9e-05 23.8 20.6 0.0019 18.4 3.9 4.5 3 1 0 3 3 3 2 Flagellin hook IN motif Flg_bb_rod PF00460.20 EME69186.1 - 0.00028 20.7 0.5 0.00028 20.7 0.5 2.4 2 0 0 2 2 2 1 Flagella basal body rod protein Leptin PF02024.15 EME69186.1 - 0.014 15.1 0.7 0.042 13.6 0.0 2.0 2 0 0 2 2 2 0 Leptin DALR_2 PF09190.11 EME69186.1 - 0.2 12.1 1.5 3.1 8.3 0.1 3.5 3 0 0 3 3 3 0 DALR domain KinB_sensor PF16767.5 EME69186.1 - 0.76 10.3 4.3 0.8 10.2 0.5 2.5 2 0 0 2 2 2 0 Sensor domain of alginate biosynthesis sensor protein KinB Flagellin_C PF00700.21 EME69187.1 - 3.1e-07 30.7 5.5 9.4e-07 29.1 2.8 3.0 2 0 0 2 2 2 1 Bacterial flagellin C-terminal helical region Flagellin_N PF00669.20 EME69187.1 - 0.00028 21.0 4.4 0.00028 21.0 4.4 3.2 3 0 0 3 3 3 1 Bacterial flagellin N-terminal helical region FlbT PF07378.11 EME69188.1 - 6.7e-39 132.8 0.0 7.8e-39 132.6 0.0 1.1 1 0 0 1 1 1 1 Flagellar protein FlbT DSBA PF01323.20 EME69189.1 - 1.5e-30 106.4 0.0 1.7e-30 106.3 0.0 1.0 1 0 0 1 1 1 1 DSBA-like thioredoxin domain adh_short PF00106.25 EME69190.1 - 4.1e-29 101.4 0.2 6.1e-29 100.9 0.2 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 EME69190.1 - 4.7e-27 95.1 4.5 5.3e-27 94.9 4.5 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 EME69190.1 - 0.00019 21.4 3.1 0.00041 20.3 3.1 1.5 1 1 0 1 1 1 1 KR domain Epimerase PF01370.21 EME69190.1 - 0.00054 19.5 0.1 0.001 18.6 0.1 1.5 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 EME69190.1 - 0.0082 15.3 0.2 0.014 14.5 0.2 1.4 1 0 0 1 1 1 1 RmlD substrate binding domain Ribonuc_L-PSP PF01042.21 EME69191.1 - 2.2e-26 92.2 0.1 2.5e-26 92.1 0.1 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP DUF1491 PF07372.12 EME69192.1 - 3.4e-31 107.7 0.1 3.9e-31 107.5 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1491) cNMP_binding PF00027.29 EME69193.1 - 8.1e-21 73.9 0.0 1.8e-20 72.8 0.0 1.6 1 0 0 1 1 1 1 Cyclic nucleotide-binding domain Ion_trans PF00520.31 EME69193.1 - 7.6e-19 67.9 0.6 1.1e-18 67.4 0.6 1.2 1 0 0 1 1 1 1 Ion transport protein Ion_trans_2 PF07885.16 EME69193.1 - 4.6e-15 55.4 2.9 4.6e-15 55.4 2.9 2.0 2 0 0 2 2 2 1 Ion channel DUF418 PF04235.12 EME69193.1 - 0.081 12.8 0.3 0.081 12.8 0.3 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF418) Exo_endo_phos PF03372.23 EME69194.1 - 5.1e-09 36.0 0.0 2e-08 34.0 0.0 1.8 1 1 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family DUF1133 PF06576.11 EME69194.1 - 0.25 10.7 0.1 0.5 9.7 0.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1133) Hemerythrin PF01814.23 EME69195.1 - 5.2e-14 53.0 0.4 6.5e-14 52.7 0.4 1.1 1 0 0 1 1 1 1 Hemerythrin HHE cation binding domain EH_Signature PF15611.6 EME69195.1 - 0.02 14.3 0.1 0.025 14.0 0.1 1.1 1 0 0 1 1 1 0 EH_Signature domain CheZ PF04344.13 EME69196.1 - 1.5e-11 44.6 1.5 6.2e-09 36.1 0.0 2.4 1 1 1 2 2 2 2 Chemotaxis phosphatase, CheZ zf-C4H2 PF10146.9 EME69196.1 - 0.014 15.7 0.3 0.04 14.2 0.1 1.9 1 1 0 2 2 2 0 Zinc finger-containing protein GAS PF13851.6 EME69196.1 - 0.06 12.7 0.0 0.12 11.7 0.0 1.5 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding DUF3418 PF11898.8 EME69196.1 - 0.067 11.9 0.1 0.081 11.6 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3418) DCB PF16213.5 EME69196.1 - 0.072 12.7 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 Dimerisation and cyclophilin-binding domain of Mon2 Fez1 PF06818.15 EME69196.1 - 0.14 12.6 0.0 0.21 12.0 0.0 1.4 1 0 0 1 1 1 0 Fez1 MraZ PF02381.18 EME69197.1 - 4e-14 52.3 0.0 9.5e-08 31.9 0.0 2.3 2 1 0 2 2 2 2 MraZ protein, putative antitoxin-like MazE_antitoxin PF04014.18 EME69197.1 - 0.094 12.7 0.1 1.2 9.1 0.0 2.1 2 0 0 2 2 2 0 Antidote-toxin recognition MazE, bacterial antitoxin Methyltransf_5 PF01795.19 EME69198.1 - 6.6e-98 328.0 0.0 7.5e-98 327.8 0.0 1.0 1 0 0 1 1 1 1 MraW methylase family Methyltransf_11 PF08241.12 EME69198.1 - 0.029 15.0 0.1 9.5 6.9 0.0 2.5 2 0 0 2 2 2 0 Methyltransferase domain HHH_3 PF12836.7 EME69198.1 - 0.053 13.8 0.5 2.4 8.5 0.3 2.3 2 0 0 2 2 2 0 Helix-hairpin-helix motif Methyltransf_31 PF13847.6 EME69198.1 - 0.067 13.0 0.0 12 5.7 0.0 2.2 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_25 PF13649.6 EME69198.1 - 0.092 13.5 0.1 2.3 9.0 0.0 2.5 2 1 0 2 2 2 0 Methyltransferase domain FtsL PF04999.13 EME69199.1 - 0.046 13.7 0.0 0.068 13.2 0.0 1.2 1 0 0 1 1 1 0 Cell division protein FtsL Transpeptidase PF00905.22 EME69200.1 - 2.4e-59 201.0 0.0 3.3e-59 200.6 0.0 1.1 1 0 0 1 1 1 1 Penicillin binding protein transpeptidase domain PBP_dimer PF03717.15 EME69200.1 - 8.2e-11 42.6 0.0 1e-09 39.0 0.0 2.1 1 1 0 1 1 1 1 Penicillin-binding Protein dimerisation domain Mur_ligase_M PF08245.12 EME69201.1 - 2.6e-48 164.6 0.0 3.5e-48 164.2 0.0 1.2 1 0 0 1 1 1 1 Mur ligase middle domain Mur_ligase_C PF02875.21 EME69201.1 - 3.5e-24 84.9 0.1 1.1e-21 76.8 0.0 3.0 3 0 0 3 3 3 2 Mur ligase family, glutamate ligase domain Mur_ligase PF01225.25 EME69201.1 - 5.6e-11 42.6 0.1 4.1e-10 39.9 0.0 2.6 2 1 0 2 2 2 1 Mur ligase family, catalytic domain Tape_meas_lam_C PF09718.10 EME69201.1 - 0.12 12.5 0.2 0.29 11.3 0.2 1.6 1 0 0 1 1 1 0 Lambda phage tail tape-measure protein (Tape_meas_lam_C) Mur_ligase_M PF08245.12 EME69202.1 - 3.1e-41 141.5 0.0 4.3e-41 141.0 0.0 1.2 1 0 0 1 1 1 1 Mur ligase middle domain Mur_ligase_C PF02875.21 EME69202.1 - 2.8e-12 46.7 0.1 6e-11 42.5 0.0 2.6 3 0 0 3 3 3 1 Mur ligase family, glutamate ligase domain Mur_ligase PF01225.25 EME69202.1 - 3.9e-12 46.3 0.1 1.1e-11 44.9 0.1 1.9 1 0 0 1 1 1 1 Mur ligase family, catalytic domain Glycos_transf_4 PF00953.21 EME69203.1 - 5.3e-35 120.7 13.4 5.3e-35 120.7 13.4 2.0 3 0 0 3 3 3 1 Glycosyl transferase family 4 MraY_sig1 PF10555.9 EME69203.1 - 0.0015 17.9 5.2 0.0047 16.4 5.2 1.9 1 0 0 1 1 1 1 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 YtpI PF14007.6 EME69203.1 - 0.9 9.7 0.0 0.9 9.7 0.0 3.8 4 1 0 4 4 4 0 YtpI-like protein Mur_ligase_M PF08245.12 EME69204.1 - 1.1e-27 97.4 0.0 1.9e-27 96.5 0.0 1.4 1 0 0 1 1 1 1 Mur ligase middle domain Mur_ligase_C PF02875.21 EME69204.1 - 0.0002 21.5 0.0 0.0012 19.1 0.0 2.3 2 0 0 2 2 2 1 Mur ligase family, glutamate ligase domain 2-Hacid_dh_C PF02826.19 EME69204.1 - 0.0015 17.9 0.0 0.003 16.9 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Peptidase_M17_N PF02789.17 EME69204.1 - 0.074 12.9 0.5 0.23 11.3 0.1 2.0 2 0 0 2 2 2 0 Cytosol aminopeptidase family, N-terminal domain FTSW_RODA_SPOVE PF01098.19 EME69205.1 - 1e-77 261.6 23.7 1.2e-77 261.4 23.7 1.0 1 0 0 1 1 1 1 Cell cycle protein LMBR1 PF04791.16 EME69205.1 - 1.7 7.5 4.8 0.34 9.8 0.3 2.0 2 0 0 2 2 2 0 LMBR1-like membrane protein Glyco_tran_28_C PF04101.16 EME69206.1 - 7.9e-37 126.8 0.0 1.1e-36 126.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase family 28 C-terminal domain Glyco_transf_28 PF03033.20 EME69206.1 - 4.1e-31 107.9 0.7 6.8e-31 107.2 0.7 1.4 1 0 0 1 1 1 1 Glycosyltransferase family 28 N-terminal domain Glyco_trans_4_4 PF13579.6 EME69206.1 - 0.0058 17.1 3.4 0.0058 17.1 3.4 2.4 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Mur_ligase PF01225.25 EME69207.1 - 1.5e-28 98.9 2.0 2.2e-28 98.4 0.9 1.9 2 0 0 2 2 2 1 Mur ligase family, catalytic domain Mur_ligase_M PF08245.12 EME69207.1 - 8.2e-28 97.7 0.1 1.2e-27 97.1 0.1 1.3 1 0 0 1 1 1 1 Mur ligase middle domain Mur_ligase_C PF02875.21 EME69207.1 - 3.2e-20 72.2 0.2 2.5e-19 69.3 0.0 2.7 3 0 0 3 3 3 1 Mur ligase family, glutamate ligase domain MurB_C PF02873.16 EME69208.1 - 4.6e-29 100.9 0.1 1.5e-28 99.3 0.0 1.9 2 1 0 2 2 2 1 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain FAD_binding_4 PF01565.23 EME69208.1 - 4.5e-21 75.1 3.8 4.3e-20 71.9 2.6 2.1 2 0 0 2 2 2 1 FAD binding domain Dala_Dala_lig_C PF07478.13 EME69209.1 - 1.2e-38 132.7 0.0 1.7e-38 132.2 0.0 1.2 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus Dala_Dala_lig_N PF01820.21 EME69209.1 - 5.1e-20 71.9 0.1 3.2e-19 69.3 0.1 2.0 1 1 0 1 1 1 1 D-ala D-ala ligase N-terminus B12-binding PF02310.19 EME69209.1 - 6.6e-06 26.2 0.1 3.7e-05 23.7 0.1 2.1 1 1 1 2 2 2 1 B12 binding domain ATP-grasp_3 PF02655.14 EME69209.1 - 0.00022 21.3 0.0 0.00039 20.5 0.0 1.4 1 1 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.6 EME69209.1 - 0.00074 19.1 0.0 1.2 8.7 0.1 2.2 2 0 0 2 2 2 2 ATP-grasp domain GARS_A PF01071.19 EME69209.1 - 0.017 14.9 0.0 0.15 11.8 0.0 2.1 1 1 0 1 1 1 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain POTRA_1 PF08478.10 EME69210.1 - 1.1e-15 57.7 0.0 9e-15 54.7 0.0 2.2 2 0 0 2 2 2 1 POTRA domain, FtsQ-type FtsQ PF03799.15 EME69210.1 - 2.3e-14 54.2 0.3 5.6e-14 53.0 0.2 1.7 2 0 0 2 2 2 1 Cell division protein FtsQ P22_Cro PF14549.6 EME69210.1 - 0.011 15.5 0.0 0.023 14.5 0.0 1.4 1 0 0 1 1 1 0 DNA-binding transcriptional regulator Cro FtsA PF14450.6 EME69211.1 - 2.7e-32 111.3 0.5 1.6e-20 73.4 0.0 2.1 2 0 0 2 2 2 2 Cell division protein FtsA SHS2_FTSA PF02491.20 EME69211.1 - 6.2e-24 84.2 0.5 6.2e-24 84.2 0.5 2.4 3 0 0 3 3 3 1 SHS2 domain inserted in FTSA MreB_Mbl PF06723.13 EME69211.1 - 5.7e-10 38.5 2.2 2.9e-08 32.9 0.6 2.3 2 0 0 2 2 2 2 MreB/Mbl protein EutA PF06277.11 EME69211.1 - 3e-06 26.4 0.2 3e-06 26.4 0.2 1.7 2 0 0 2 2 2 1 Ethanolamine utilisation protein EutA PilM_2 PF11104.8 EME69211.1 - 0.00014 21.1 0.1 0.011 14.8 0.0 2.8 3 1 0 3 3 3 1 Type IV pilus assembly protein PilM; HSP70 PF00012.20 EME69211.1 - 0.0026 16.0 0.2 0.36 9.0 0.0 2.3 2 0 0 2 2 2 2 Hsp70 protein GATase_7 PF13537.6 EME69211.1 - 0.025 14.5 0.0 0.06 13.3 0.0 1.6 2 0 0 2 2 2 0 Glutamine amidotransferase domain Tubulin PF00091.25 EME69212.1 - 4.2e-40 138.0 1.2 7.6e-40 137.2 1.2 1.4 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 EME69212.1 - 7.5e-40 135.1 2.0 7.5e-40 135.1 2.0 1.9 2 0 0 2 2 2 1 FtsZ family, C-terminal domain Tubulin_2 PF13809.6 EME69212.1 - 0.067 12.4 10.0 0.12 11.5 4.3 2.5 1 1 1 2 2 2 0 Tubulin like LpxC PF03331.13 EME69213.1 - 1.9e-103 345.7 0.0 2.1e-103 345.5 0.0 1.0 1 0 0 1 1 1 1 UDP-3-O-acyl N-acetylglycosamine deacetylase GRA6 PF05084.13 EME69213.1 - 0.05 13.6 0.0 0.078 12.9 0.0 1.2 1 0 0 1 1 1 0 Granule antigen protein (GRA6) UDG PF03167.19 EME69214.1 - 2.1e-45 154.5 0.0 2.5e-45 154.2 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily RskA PF10099.9 EME69214.1 - 1 9.6 6.7 0.19 12.0 0.6 2.0 2 0 0 2 2 2 0 Anti-sigma-K factor rskA Methyltransf_21 PF05050.12 EME69215.1 - 8.8e-15 55.2 0.0 1.4e-14 54.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase FkbM domain HSP70 PF00012.20 EME69216.1 - 6.5e-276 916.3 9.9 7.4e-276 916.1 9.9 1.0 1 0 0 1 1 1 1 Hsp70 protein MreB_Mbl PF06723.13 EME69216.1 - 4.2e-18 65.3 2.1 4.7e-16 58.5 0.9 2.7 2 1 0 2 2 2 2 MreB/Mbl protein FtsA PF14450.6 EME69216.1 - 0.0016 18.9 4.4 0.38 11.2 0.0 3.6 3 1 0 3 3 3 2 Cell division protein FtsA DMRL_synthase PF00885.19 EME69216.1 - 0.031 14.1 0.2 0.11 12.4 0.2 1.8 1 0 0 1 1 1 0 6,7-dimethyl-8-ribityllumazine synthase DnaJ_C PF01556.18 EME69217.1 - 3.6e-40 137.5 0.0 4.7e-40 137.1 0.0 1.2 1 0 0 1 1 1 1 DnaJ C terminal domain DnaJ PF00226.31 EME69217.1 - 1.1e-27 95.9 1.5 1.1e-27 95.9 1.5 2.1 2 0 0 2 2 2 1 DnaJ domain DnaJ_CXXCXGXG PF00684.19 EME69217.1 - 9.3e-13 48.3 19.5 1.7e-12 47.5 19.5 1.5 1 0 0 1 1 1 1 DnaJ central domain Anti-TRAP PF15777.5 EME69217.1 - 0.014 15.3 18.9 0.57 10.2 4.0 3.2 1 1 2 3 3 3 0 Tryptophan RNA-binding attenuator protein inhibitory protein LTXXQ PF07813.12 EME69217.1 - 0.026 15.2 1.2 4.7 8.0 0.1 2.3 2 0 0 2 2 2 0 LTXXQ motif family protein UvsW PF11637.8 EME69217.1 - 0.053 13.6 0.0 0.51 10.5 0.0 2.5 2 0 0 2 2 2 0 ATP-dependant DNA helicase UvsW RseC_MucC PF04246.12 EME69217.1 - 4 7.4 5.0 1.1e+02 2.7 5.0 2.4 1 1 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC DUF1356 PF07092.12 EME69217.1 - 6.4 6.0 10.9 2.7 7.2 1.7 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1356) HypA PF01155.19 EME69217.1 - 7.5 6.6 8.7 30 4.7 4.8 2.3 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA PhdYeFM_antitox PF02604.19 EME69218.1 - 3.7e-12 45.9 0.0 5.2e-12 45.4 0.0 1.4 1 1 0 1 1 1 1 Antitoxin Phd_YefM, type II toxin-antitoxin system PIN PF01850.21 EME69219.1 - 1.1e-15 58.2 0.9 1.4e-15 57.9 0.9 1.0 1 0 0 1 1 1 1 PIN domain ABC_tran PF00005.27 EME69220.1 - 4.9e-33 114.6 0.0 6.6e-33 114.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 EME69220.1 - 6.6e-08 32.7 0.0 0.011 15.6 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 EME69220.1 - 0.00063 19.3 0.0 0.0027 17.2 0.0 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 EME69220.1 - 0.001 18.8 0.0 0.0018 18.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 EME69220.1 - 0.0033 17.8 0.0 0.0047 17.3 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.6 EME69220.1 - 0.0083 15.7 0.2 0.022 14.3 0.2 1.7 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 EME69220.1 - 0.011 15.6 0.0 0.021 14.7 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_18 PF13238.6 EME69220.1 - 0.045 14.3 0.0 1.5 9.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 EME69220.1 - 0.065 13.5 0.0 0.13 12.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.7 EME69220.1 - 0.071 12.0 0.0 0.095 11.6 0.0 1.1 1 0 0 1 1 1 0 AAA-like domain Zeta_toxin PF06414.12 EME69220.1 - 0.074 12.3 0.0 0.12 11.7 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin AAA_27 PF13514.6 EME69220.1 - 0.091 12.3 0.0 0.15 11.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain TrwB_AAD_bind PF10412.9 EME69220.1 - 0.11 11.4 0.0 0.2 10.5 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain FAM167 PF11652.8 EME69220.1 - 0.14 12.7 0.1 0.44 11.0 0.1 1.9 2 0 0 2 2 2 0 FAM167 AAA_33 PF13671.6 EME69220.1 - 0.15 12.2 0.0 0.52 10.5 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.6 EME69220.1 - 0.16 12.5 0.0 0.25 11.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain PIF1 PF05970.14 EME69220.1 - 0.21 10.8 0.0 0.32 10.1 0.0 1.3 1 0 0 1 1 1 0 PIF1-like helicase FtsX PF02687.21 EME69221.1 - 0.00029 21.2 11.8 0.0003 21.2 2.9 2.9 2 1 0 2 2 2 2 FtsX-like permease family DUF296 PF03479.15 EME69221.1 - 0.075 13.4 0.1 0.15 12.4 0.1 1.5 1 0 0 1 1 1 0 Plants and Prokaryotes Conserved (PCC) domain DUF218 PF02698.17 EME69222.1 - 4.6e-15 55.8 0.0 6.9e-15 55.2 0.0 1.2 1 0 0 1 1 1 1 DUF218 domain Acyltransferase PF01553.21 EME69223.1 - 2.1e-20 72.7 0.0 2.8e-20 72.3 0.0 1.2 1 0 0 1 1 1 1 Acyltransferase Ribonuc_red_lgC PF02867.15 EME69224.1 - 6.5e-137 457.2 0.0 2e-136 455.6 0.0 1.7 1 1 0 1 1 1 1 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.21 EME69224.1 - 3.2e-10 39.8 0.0 8.8e-10 38.5 0.0 1.8 1 0 0 1 1 1 1 Ribonucleotide reductase, all-alpha domain IBR PF01485.21 EME69224.1 - 0.19 12.0 3.4 0.41 10.9 3.4 1.6 1 0 0 1 1 1 0 IBR domain, a half RING-finger domain S4 PF01479.25 EME69225.1 - 8e-12 44.7 0.0 1e-11 44.3 0.0 1.2 1 0 0 1 1 1 1 S4 domain S4_2 PF13275.6 EME69225.1 - 0.0047 16.7 0.0 0.0058 16.4 0.0 1.2 1 0 0 1 1 1 1 S4 domain GlnD_UR_UTase PF08335.11 EME69226.1 - 9.1e-35 119.9 0.0 1.8e-34 118.9 0.0 1.5 1 0 0 1 1 1 1 GlnD PII-uridylyltransferase ACT PF01842.25 EME69226.1 - 1.5e-09 37.4 0.4 0.00012 21.8 0.0 2.9 2 0 0 2 2 2 2 ACT domain HD PF01966.22 EME69226.1 - 4.8e-08 33.3 0.5 3.5e-07 30.5 0.2 2.5 2 0 0 2 2 2 1 HD domain ACT_6 PF13740.6 EME69226.1 - 2e-07 30.9 0.1 0.022 14.7 0.0 2.7 2 0 0 2 2 2 2 ACT domain ACT_4 PF13291.6 EME69226.1 - 4.4e-07 30.4 0.1 0.0031 18.1 0.0 2.6 2 0 0 2 2 2 2 ACT domain NTP_transf_2 PF01909.23 EME69226.1 - 2.5e-06 27.7 0.0 4.9e-06 26.7 0.0 1.5 1 0 0 1 1 1 1 Nucleotidyltransferase domain GlnE PF03710.15 EME69226.1 - 0.004 16.6 0.0 0.0099 15.3 0.0 1.6 1 0 0 1 1 1 1 Glutamate-ammonia ligase adenylyltransferase CobA_CobO_BtuR PF02572.15 EME69227.1 - 1.5e-61 207.6 0.3 2.1e-61 207.2 0.3 1.2 1 0 0 1 1 1 1 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Co_AT_N PF12557.8 EME69227.1 - 0.00072 19.4 9.7 0.0015 18.4 9.7 1.5 1 0 0 1 1 1 1 Cob(I)alamin adenosyltransferase N terminal AAA_25 PF13481.6 EME69227.1 - 0.0024 17.5 1.8 0.0055 16.3 1.4 1.8 1 1 0 1 1 1 1 AAA domain TniB PF05621.11 EME69227.1 - 0.13 11.6 0.0 0.37 10.2 0.0 1.7 2 0 0 2 2 2 0 Bacterial TniB protein ABC_tran PF00005.27 EME69228.1 - 2.6e-29 102.5 0.0 3.6e-29 102.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 EME69228.1 - 1.7e-11 44.5 0.0 0.00012 22.0 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 EME69228.1 - 1.3e-06 28.0 0.0 1.1e-05 24.9 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 EME69228.1 - 0.00042 20.3 0.0 0.00083 19.3 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_29 PF13555.6 EME69228.1 - 0.00072 19.2 0.0 0.0016 18.1 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 EME69228.1 - 0.0012 19.1 0.0 0.0022 18.3 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 EME69228.1 - 0.0015 18.3 0.0 0.0027 17.5 0.0 1.4 2 0 0 2 2 2 1 AAA ATPase domain AAA_16 PF13191.6 EME69228.1 - 0.0019 18.6 0.1 0.0038 17.6 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.6 EME69228.1 - 0.0029 17.2 0.1 0.011 15.3 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.6 EME69228.1 - 0.0075 16.8 0.0 0.012 16.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain Rad17 PF03215.15 EME69228.1 - 0.0091 15.9 0.0 0.017 15.1 0.0 1.4 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_33 PF13671.6 EME69228.1 - 0.025 14.7 0.0 0.039 14.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 EME69228.1 - 0.03 14.0 0.7 0.29 10.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 EME69228.1 - 0.041 14.3 0.3 1.2 9.6 0.0 2.3 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 EME69228.1 - 0.063 13.0 0.2 0.26 11.0 0.0 2.0 3 0 0 3 3 3 0 AAA domain ABC_ATPase PF09818.9 EME69228.1 - 0.09 11.5 0.1 7.1 5.3 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_18 PF13238.6 EME69228.1 - 0.14 12.7 0.0 0.27 11.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 EME69228.1 - 0.16 11.9 0.0 0.49 10.3 0.0 1.7 2 0 0 2 2 2 0 NACHT domain AAA_5 PF07728.14 EME69228.1 - 0.17 11.9 0.0 0.68 9.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) PhoU PF01895.19 EME69229.1 - 1.2e-35 121.8 8.6 7.1e-19 68.1 2.3 2.1 2 0 0 2 2 2 2 PhoU domain PHO4 PF01384.20 EME69230.1 - 3.2e-90 302.6 39.9 1.1e-89 300.8 39.9 1.7 1 1 0 1 1 1 1 Phosphate transporter family WBS28 PF15164.6 EME69230.1 - 0.0084 15.4 0.7 0.02 14.2 0.7 1.6 1 0 0 1 1 1 1 Williams-Beuren syndrome chromosomal region 28 protein homologue PsbY PF06298.11 EME69230.1 - 1.6 8.7 0.0 1.6 8.7 0.0 4.3 5 0 0 5 5 5 0 Photosystem II protein Y (PsbY) PhoU_div PF01865.16 EME69231.1 - 4.7e-35 120.9 2.8 5.4e-35 120.7 2.8 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF47 Methyltransf_4 PF02390.17 EME69232.1 - 1.4e-40 138.6 0.0 1.6e-40 138.4 0.0 1.1 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_25 PF13649.6 EME69232.1 - 0.0027 18.4 0.0 0.005 17.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 EME69232.1 - 0.059 14.0 0.0 0.16 12.7 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_12 PF08242.12 EME69232.1 - 0.15 12.8 0.0 0.66 10.8 0.0 1.9 2 0 0 2 2 2 0 Methyltransferase domain S-AdoMet_synt_C PF02773.16 EME69233.1 - 5.5e-64 214.3 0.1 4.8e-63 211.2 0.0 2.1 2 0 0 2 2 2 1 S-adenosylmethionine synthetase, C-terminal domain S-AdoMet_synt_M PF02772.16 EME69233.1 - 1.6e-38 131.7 0.0 2.9e-38 130.8 0.0 1.5 1 0 0 1 1 1 1 S-adenosylmethionine synthetase, central domain S-AdoMet_synt_N PF00438.20 EME69233.1 - 5.2e-37 126.5 0.1 2.7e-36 124.2 0.0 2.1 2 0 0 2 2 2 1 S-adenosylmethionine synthetase, N-terminal domain HTH_3 PF01381.22 EME69234.1 - 7.4e-09 35.5 0.0 1.7e-08 34.4 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.6 EME69234.1 - 0.00022 21.5 0.0 0.00077 19.8 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_19 PF12844.7 EME69234.1 - 0.0017 18.3 0.0 0.003 17.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain CN_hydrolase PF00795.22 EME69235.1 - 4e-25 88.6 0.0 9.3e-25 87.4 0.0 1.5 1 1 0 1 1 1 1 Carbon-nitrogen hydrolase TruB_C PF09142.11 EME69235.1 - 0.94 9.3 7.3 0.083 12.7 0.6 2.8 3 0 0 3 3 3 0 tRNA Pseudouridine synthase II, C terminal CorC_HlyC PF03471.17 EME69236.1 - 2.7e-16 59.4 3.7 4.5e-16 58.6 0.5 2.5 2 0 0 2 2 2 1 Transporter associated domain CBS PF00571.28 EME69236.1 - 6.3e-11 42.6 8.1 2.5e-05 24.6 0.3 3.4 2 1 1 3 3 3 2 CBS domain UPF0054 PF02130.17 EME69237.1 - 2.7e-34 117.8 0.0 3.1e-34 117.5 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein family UPF0054 PhoH PF02562.16 EME69238.1 - 1.1e-88 296.1 0.0 1.3e-88 295.8 0.0 1.1 1 0 0 1 1 1 1 PhoH-like protein AAA_30 PF13604.6 EME69238.1 - 6.9e-09 35.7 0.0 1.1e-08 35.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.6 EME69238.1 - 5.8e-06 26.7 0.2 1.8e-05 25.1 0.2 1.8 1 1 0 1 1 1 1 AAA domain UvrD-helicase PF00580.21 EME69238.1 - 0.00015 21.4 0.2 0.022 14.3 0.0 2.2 2 0 0 2 2 2 2 UvrD/REP helicase N-terminal domain KH_1 PF00013.29 EME69238.1 - 0.0036 17.1 0.0 0.0069 16.2 0.0 1.5 1 0 0 1 1 1 1 KH domain DEAD PF00270.29 EME69238.1 - 0.01 15.6 0.1 4.4 7.0 0.0 2.2 2 0 0 2 2 2 0 DEAD/DEAH box helicase IstB_IS21 PF01695.17 EME69238.1 - 0.011 15.4 0.0 0.024 14.3 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_25 PF13481.6 EME69238.1 - 0.017 14.7 0.3 0.033 13.8 0.2 1.8 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 EME69238.1 - 0.06 13.6 0.1 10 6.4 0.0 2.5 2 0 0 2 2 2 0 AAA domain Secretin_N PF03958.17 EME69238.1 - 0.067 13.6 0.1 0.27 11.7 0.1 2.0 1 1 0 1 1 1 0 Bacterial type II/III secretion system short domain UPF0004 PF00919.20 EME69239.1 - 8.6e-30 102.7 0.0 1.4e-29 102.0 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 Radical_SAM PF04055.21 EME69239.1 - 9.3e-29 100.9 0.0 2.3e-28 99.6 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily TRAM PF01938.20 EME69239.1 - 9.7e-10 38.3 0.0 1.6e-09 37.6 0.0 1.4 1 0 0 1 1 1 1 TRAM domain B12-binding PF02310.19 EME69239.1 - 0.064 13.3 0.0 0.16 12.0 0.0 1.6 1 0 0 1 1 1 0 B12 binding domain TRAM_2 PF18693.1 EME69239.1 - 0.11 12.7 0.0 0.29 11.3 0.0 1.8 1 1 0 1 1 1 0 TRAM domain Acyltransferase PF01553.21 EME69240.1 - 1.5e-18 66.8 0.0 2.1e-18 66.2 0.0 1.2 1 0 0 1 1 1 1 Acyltransferase Acetyltransf_5 PF13444.6 EME69241.1 - 2.2e-32 111.7 0.1 3.4e-32 111.1 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FUR PF01475.19 EME69242.1 - 2.3e-40 137.5 0.1 2.6e-40 137.3 0.1 1.0 1 0 0 1 1 1 1 Ferric uptake regulator family RepL PF05732.11 EME69242.1 - 0.00071 19.0 0.0 0.12 11.7 0.0 2.1 2 0 0 2 2 2 2 Firmicute plasmid replication protein (RepL) TPR_14 PF13428.6 EME69242.1 - 0.054 14.3 0.1 0.67 10.9 0.0 2.4 2 0 0 2 2 2 0 Tetratricopeptide repeat HTH_23 PF13384.6 EME69242.1 - 0.084 12.7 0.2 1.8 8.4 0.0 2.8 2 0 0 2 2 2 0 Homeodomain-like domain ROS_MUCR PF05443.11 EME69243.1 - 1.9e-49 166.8 0.0 2.2e-49 166.7 0.0 1.0 1 0 0 1 1 1 1 ROS/MUCR transcriptional regulator protein TusA PF01206.17 EME69244.1 - 8.3e-15 54.4 0.0 9e-15 54.3 0.0 1.1 1 0 0 1 1 1 1 Sulfurtransferase TusA Acetyltransf_1 PF00583.25 EME69245.1 - 2.1e-11 44.1 0.0 2.4e-11 43.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 EME69245.1 - 2.9e-08 33.7 0.0 3.4e-08 33.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 EME69245.1 - 3.2e-08 33.9 0.0 4.1e-08 33.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 EME69245.1 - 7e-06 25.9 0.0 1.2e-05 25.1 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Na_H_antiport_3 PF07399.11 EME69245.1 - 0.043 12.7 0.0 0.067 12.0 0.0 1.3 1 0 0 1 1 1 0 Putative Na+/H+ antiporter Acetyltransf_4 PF13420.7 EME69245.1 - 0.11 12.7 0.0 0.14 12.3 0.0 1.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 EME69245.1 - 0.12 12.0 0.0 0.19 11.4 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 EME69245.1 - 0.12 13.0 0.0 0.14 12.9 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Peptidase_M22 PF00814.25 EME69246.1 - 2e-19 70.3 0.8 3.1e-19 69.7 0.4 1.4 2 0 0 2 2 2 1 Glycoprotease family Peptidase_M15 PF01427.17 EME69247.1 - 9.5e-39 133.2 0.0 1.8e-38 132.3 0.0 1.3 1 1 0 1 1 1 1 D-ala-D-ala dipeptidase VanY PF02557.17 EME69247.1 - 0.00037 20.3 0.5 0.0014 18.5 0.5 2.1 1 1 0 1 1 1 1 D-alanyl-D-alanine carboxypeptidase Peptidase_M15_4 PF13539.6 EME69247.1 - 0.07 13.6 0.6 1.4 9.4 0.7 2.6 2 1 0 2 2 2 0 D-alanyl-D-alanine carboxypeptidase FMN_dh PF01070.18 EME69248.1 - 3.1e-116 388.2 0.2 3.5e-116 388.1 0.2 1.0 1 0 0 1 1 1 1 FMN-dependent dehydrogenase IMPDH PF00478.25 EME69248.1 - 0.00014 21.0 4.7 0.00038 19.6 4.7 1.7 1 1 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain Glu_synthase PF01645.17 EME69248.1 - 0.0014 17.8 0.3 0.0022 17.2 0.3 1.3 1 0 0 1 1 1 1 Conserved region in glutamate synthase NanE PF04131.14 EME69248.1 - 0.054 12.7 0.2 0.93 8.6 0.0 2.6 2 1 1 3 3 3 0 Putative N-acetylmannosamine-6-phosphate epimerase DHO_dh PF01180.21 EME69248.1 - 0.061 12.5 1.1 0.091 11.9 0.7 1.4 1 1 0 1 1 1 0 Dihydroorotate dehydrogenase His_biosynth PF00977.21 EME69248.1 - 0.11 11.9 0.4 0.38 10.2 0.2 1.8 1 1 1 2 2 2 0 Histidine biosynthesis protein Endonuclease_NS PF01223.23 EME69250.1 - 8.2e-28 97.8 0.0 1e-27 97.5 0.0 1.2 1 0 0 1 1 1 1 DNA/RNA non-specific endonuclease NTP_transferase PF00483.23 EME69251.1 - 1.7e-27 96.6 0.0 2.2e-27 96.2 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 EME69251.1 - 6.6e-10 39.6 1.6 2.1e-09 37.9 1.6 1.9 1 1 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 EME69251.1 - 0.02 14.7 0.0 0.039 13.7 0.0 1.5 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ChaC PF04752.12 EME69252.1 - 1.6e-40 139.1 0.0 1.9e-40 138.8 0.0 1.0 1 0 0 1 1 1 1 ChaC-like protein GGACT PF06094.12 EME69252.1 - 7e-08 33.1 0.0 9.5e-08 32.7 0.0 1.2 1 0 0 1 1 1 1 Gamma-glutamyl cyclotransferase, AIG2-like AIG2_2 PF13772.6 EME69252.1 - 0.054 13.9 0.0 0.078 13.4 0.0 1.3 1 0 0 1 1 1 0 AIG2-like family DUF2125 PF09898.9 EME69253.1 - 1.4e-52 179.4 16.4 1.6e-52 179.1 16.4 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2125) MLTD_N PF06474.12 EME69253.1 - 0.55 10.5 2.8 1.4 9.1 2.8 1.7 1 0 0 1 1 1 0 MltD lipid attachment motif Aminotran_5 PF00266.19 EME69254.1 - 3.7e-36 124.8 0.0 8.5e-35 120.4 0.0 2.0 1 1 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 EME69254.1 - 0.0014 17.2 0.0 0.0023 16.5 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 EME69254.1 - 0.0047 16.3 1.3 0.0091 15.3 1.3 1.4 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Glyco_transf_9 PF01075.17 EME69255.1 - 2.6e-18 66.2 0.0 3.7e-18 65.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase family 9 (heptosyltransferase) GYF_2 PF14237.6 EME69255.1 - 0.029 14.2 0.1 0.14 12.0 0.0 2.1 2 0 0 2 2 2 0 GYF domain 2 Epimerase_2 PF02350.19 EME69255.1 - 0.18 10.6 0.0 0.26 10.1 0.0 1.2 1 0 0 1 1 1 0 UDP-N-acetylglucosamine 2-epimerase Glyco_transf_9 PF01075.17 EME69256.1 - 0.00011 21.6 0.0 0.00017 21.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase family 9 (heptosyltransferase) Glyco_transf_9 PF01075.17 EME69257.1 - 7.8e-09 35.2 0.0 1.2e-08 34.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase family 9 (heptosyltransferase) DUF4254 PF14063.6 EME69258.1 - 0.00096 19.0 0.1 0.21 11.4 0.0 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF4254) YwqJ-deaminase PF14431.6 EME69258.1 - 0.16 12.2 0.0 0.19 11.9 0.0 1.2 1 0 0 1 1 1 0 YwqJ-like deaminase FmdE PF02663.14 EME69259.1 - 0.019 15.0 0.0 0.14 12.2 0.0 2.0 1 1 0 1 1 1 0 FmdE, Molybdenum formylmethanofuran dehydrogenase operon Bac_DNA_binding PF00216.21 EME69261.1 - 6.2e-07 29.5 0.1 1.4e-06 28.4 0.1 1.5 1 1 0 1 1 1 1 Bacterial DNA-binding protein DUF2889 PF11136.8 EME69262.1 - 3.8e-26 91.8 0.0 5e-26 91.4 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2889) TetR_C_24 PF17932.1 EME69264.1 - 1.8e-18 66.9 0.0 8.4e-18 64.7 0.0 2.1 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain DUF772 PF05598.11 EME69264.1 - 4.3e-18 65.1 0.2 8.5e-18 64.2 0.2 1.5 1 0 0 1 1 1 1 Transposase domain (DUF772) TetR_N PF00440.23 EME69264.1 - 1.3e-15 56.9 0.4 2.9e-15 55.8 0.4 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_11 PF16859.5 EME69264.1 - 0.032 14.6 0.1 2.4 8.5 0.0 2.6 2 1 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain DUF5415 PF17436.2 EME69264.1 - 0.039 14.0 0.1 2.3 8.4 0.1 2.5 2 0 0 2 2 2 0 Family of unknown function (DUF5415) RE_ScaI PF09569.10 EME69264.1 - 0.046 13.4 0.0 0.087 12.5 0.0 1.4 1 0 0 1 1 1 0 ScaI restriction endonuclease HTH_10 PF04967.12 EME69264.1 - 0.048 13.5 0.2 0.18 11.6 0.0 2.0 3 0 0 3 3 3 0 HTH DNA binding domain HTH_Tnp_1_2 PF13022.6 EME69264.1 - 0.076 13.2 0.0 0.17 12.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase TetR_C_29 PF17938.1 EME69264.1 - 0.11 12.6 0.0 0.43 10.7 0.0 2.0 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain Terminase_5 PF06056.12 EME69264.1 - 0.12 12.3 0.1 0.27 11.2 0.1 1.5 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) HTH_7 PF02796.15 EME69264.1 - 0.16 12.1 0.4 0.52 10.4 0.4 1.8 1 1 0 1 1 1 0 Helix-turn-helix domain of resolvase Thiolase_C PF02803.18 EME69265.1 - 2.2e-22 79.0 0.1 5.2e-22 77.8 0.1 1.7 1 1 0 1 1 1 1 Thiolase, C-terminal domain Thiolase_N PF00108.23 EME69265.1 - 2e-20 73.3 0.0 2.9e-20 72.7 0.0 1.2 1 0 0 1 1 1 1 Thiolase, N-terminal domain ACP_syn_III PF08545.10 EME69265.1 - 0.42 10.5 7.4 0.12 12.3 0.5 3.0 3 0 0 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ABC_tran PF00005.27 EME69266.1 - 4.6e-28 98.4 0.0 8.5e-28 97.6 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 EME69266.1 - 2.3e-13 50.6 0.8 1.3e-05 25.2 0.0 2.7 2 1 1 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system Hemerythrin PF01814.23 EME69266.1 - 7.4e-11 42.8 6.2 9.2e-10 39.2 5.1 2.3 2 0 0 2 2 2 1 Hemerythrin HHE cation binding domain AAA_23 PF13476.6 EME69266.1 - 0.00059 20.4 0.0 0.001 19.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 EME69266.1 - 0.01 15.6 0.0 0.023 14.4 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain BCA_ABC_TP_C PF12399.8 EME69266.1 - 0.012 15.6 0.7 0.026 14.5 0.0 2.0 2 0 0 2 2 1 0 Branched-chain amino acid ATP-binding cassette transporter AAA_22 PF13401.6 EME69266.1 - 0.02 15.1 3.5 1.4 9.2 0.1 3.1 3 0 0 3 3 3 0 AAA domain DUF3584 PF12128.8 EME69266.1 - 0.026 12.1 0.1 0.04 11.5 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_16 PF13191.6 EME69266.1 - 0.033 14.6 0.2 0.11 12.8 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain RsgA_GTPase PF03193.16 EME69266.1 - 0.033 14.1 0.1 0.06 13.3 0.1 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_30 PF13604.6 EME69266.1 - 0.082 12.6 0.1 0.51 10.0 0.1 2.0 2 0 0 2 2 2 0 AAA domain AAA_13 PF13166.6 EME69266.1 - 0.1 11.2 0.0 0.17 10.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 EME69266.1 - 0.12 11.9 0.1 0.29 10.7 0.1 1.6 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 EME69266.1 - 0.13 12.2 0.2 0.3 11.0 0.2 1.6 1 0 0 1 1 1 0 NACHT domain TsaE PF02367.17 EME69266.1 - 0.13 12.2 0.0 0.31 11.0 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE SMC_N PF02463.19 EME69266.1 - 0.13 11.6 0.1 1.3 8.4 0.0 2.1 1 1 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_33 PF13671.6 EME69266.1 - 0.2 11.8 0.7 0.49 10.5 0.0 2.0 2 1 0 2 2 2 0 AAA domain AAA_15 PF13175.6 EME69266.1 - 0.21 11.3 0.0 0.32 10.7 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain ABC_tran PF00005.27 EME69267.1 - 6e-26 91.6 0.0 8.3e-26 91.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.8 EME69267.1 - 9e-13 47.8 0.1 1.7e-12 47.0 0.1 1.4 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_21 PF13304.6 EME69267.1 - 2.7e-07 30.7 0.3 0.00054 19.9 0.1 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 EME69267.1 - 0.00071 19.3 0.2 0.0026 17.5 0.1 1.9 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_23 PF13476.6 EME69267.1 - 0.0018 18.8 0.2 0.0024 18.4 0.2 1.2 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.6 EME69267.1 - 0.0076 15.8 0.5 0.28 10.7 0.0 2.2 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.19 EME69267.1 - 0.088 12.2 0.2 0.41 10.1 0.1 1.9 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 EME69267.1 - 0.1 12.5 0.1 0.21 11.5 0.1 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_30 PF13604.6 EME69267.1 - 0.11 12.3 0.3 0.56 9.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_13 PF13166.6 EME69267.1 - 0.16 10.6 0.1 0.2 10.3 0.1 1.1 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 EME69267.1 - 0.2 12.1 0.0 0.37 11.2 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain BPD_transp_2 PF02653.16 EME69268.1 - 2.8e-35 121.8 34.8 3.9e-35 121.3 34.8 1.2 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component DUF4231 PF14015.6 EME69268.1 - 0.048 14.1 0.1 0.048 14.1 0.1 3.3 3 1 1 4 4 4 0 Protein of unknown function (DUF4231) ATP19 PF11022.8 EME69268.1 - 0.14 12.6 0.1 0.4 11.1 0.1 1.8 1 0 0 1 1 1 0 ATP synthase subunit K Arg_repressor_C PF02863.18 EME69268.1 - 0.19 11.6 1.0 11 6.0 0.1 2.6 2 0 0 2 2 2 0 Arginine repressor, C-terminal domain BPD_transp_2 PF02653.16 EME69269.1 - 2.5e-40 138.3 38.1 3e-40 138.1 38.1 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Peripla_BP_6 PF13458.6 EME69270.1 - 1e-61 209.6 4.8 1.2e-61 209.3 4.8 1.0 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 EME69270.1 - 1.8e-20 73.3 0.1 1.5e-13 50.5 0.0 2.7 2 1 0 2 2 2 2 Periplasmic binding protein domain ANF_receptor PF01094.28 EME69270.1 - 6.1e-13 48.6 0.0 8.1e-13 48.2 0.0 1.2 1 0 0 1 1 1 1 Receptor family ligand binding region MaoC_dehydratas PF01575.19 EME69272.1 - 1.2e-25 89.5 0.0 1.4e-25 89.2 0.0 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 EME69272.1 - 6.4e-06 26.3 0.0 7e-05 23.0 0.0 2.0 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase MaoC_dehydrat_N PF13452.6 EME69273.1 - 7.8e-42 142.5 0.0 8.8e-42 142.4 0.0 1.0 1 0 0 1 1 1 1 N-terminal half of MaoC dehydratase MaoC_dehydratas PF01575.19 EME69273.1 - 0.0051 16.4 0.2 0.0068 16.0 0.2 1.3 1 1 0 1 1 1 1 MaoC like domain MeaB PF03308.16 EME69274.1 - 5e-72 242.1 0.9 6.1e-72 241.8 0.9 1.0 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB ATP_bind_1 PF03029.17 EME69274.1 - 1.3e-06 28.4 0.2 0.002 18.0 0.1 2.6 2 1 0 2 2 2 2 Conserved hypothetical ATP binding protein RsgA_GTPase PF03193.16 EME69274.1 - 7.2e-06 26.0 0.0 0.036 14.0 0.0 2.4 2 1 0 2 2 2 2 RsgA GTPase AAA_30 PF13604.6 EME69274.1 - 1.1e-05 25.2 0.3 2.6e-05 24.0 0.3 1.6 1 0 0 1 1 1 1 AAA domain cobW PF02492.19 EME69274.1 - 0.00011 21.8 0.1 0.00034 20.2 0.1 1.9 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain GTP_EFTU PF00009.27 EME69274.1 - 0.00064 19.3 0.0 0.015 14.8 0.0 2.2 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain MMR_HSR1 PF01926.23 EME69274.1 - 0.00079 19.5 0.1 0.0021 18.2 0.1 1.9 1 1 0 1 1 1 1 50S ribosome-binding GTPase NTPase_1 PF03266.15 EME69274.1 - 0.0019 18.1 0.2 0.0051 16.7 0.1 1.7 2 0 0 2 2 1 1 NTPase IstB_IS21 PF01695.17 EME69274.1 - 0.0021 17.8 0.1 0.018 14.8 0.0 2.3 2 1 0 2 2 2 1 IstB-like ATP binding protein ABC_tran PF00005.27 EME69274.1 - 0.0026 18.3 0.0 0.0051 17.3 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_16 PF13191.6 EME69274.1 - 0.0046 17.3 0.2 0.029 14.8 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain CbiA PF01656.23 EME69274.1 - 0.0095 16.0 0.0 0.019 15.0 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_29 PF13555.6 EME69274.1 - 0.015 15.0 0.0 0.032 14.0 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_18 PF13238.6 EME69274.1 - 0.017 15.6 0.1 0.056 14.0 0.1 2.0 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 EME69274.1 - 0.017 14.8 0.0 0.036 13.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 EME69274.1 - 0.031 14.2 0.4 0.064 13.2 0.4 1.5 1 0 0 1 1 1 0 NACHT domain AAA PF00004.29 EME69274.1 - 0.036 14.5 0.8 0.14 12.6 0.6 2.0 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) FeoB_N PF02421.18 EME69274.1 - 0.04 13.4 0.1 1.6 8.3 0.0 2.3 2 0 0 2 2 2 0 Ferrous iron transport protein B NB-ARC PF00931.22 EME69274.1 - 0.064 12.4 0.0 0.14 11.4 0.0 1.5 1 0 0 1 1 1 0 NB-ARC domain AAA_33 PF13671.6 EME69274.1 - 0.071 13.3 0.1 0.15 12.2 0.1 1.7 1 0 0 1 1 1 0 AAA domain PIF1 PF05970.14 EME69274.1 - 0.074 12.2 0.0 0.15 11.2 0.0 1.4 2 0 0 2 2 2 0 PIF1-like helicase Ploopntkinase3 PF18751.1 EME69274.1 - 0.092 12.7 0.4 0.41 10.5 0.0 2.2 3 0 0 3 3 3 0 P-loop Nucleotide Kinase3 RNA_helicase PF00910.22 EME69274.1 - 0.094 13.1 0.0 0.18 12.2 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_25 PF13481.6 EME69274.1 - 0.12 11.9 2.3 0.62 9.6 0.8 2.6 2 1 0 2 2 2 0 AAA domain AAA_22 PF13401.6 EME69274.1 - 0.15 12.3 0.7 1.2 9.4 0.6 2.4 2 1 0 2 2 2 0 AAA domain AAA_19 PF13245.6 EME69274.1 - 0.16 12.3 0.3 0.35 11.2 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 EME69274.1 - 0.19 11.9 0.7 0.58 10.4 0.2 2.0 1 1 1 2 2 2 0 AAA domain Oxidored_FMN PF00724.20 EME69275.1 - 7.6e-44 150.4 0.1 4.5e-32 111.7 0.1 3.1 2 1 0 2 2 2 2 NADH:flavin oxidoreductase / NADH oxidase family zf-RING_7 PF02591.15 EME69275.1 - 0.094 12.9 0.0 0.24 11.6 0.0 1.7 1 0 0 1 1 1 0 C4-type zinc ribbon domain adh_short_C2 PF13561.6 EME69276.1 - 3.6e-50 170.7 4.3 2.3e-48 164.8 4.3 2.0 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 EME69276.1 - 2.9e-46 157.4 3.3 3.8e-46 157.0 3.3 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 EME69276.1 - 3.9e-12 46.5 1.1 3.8e-11 43.2 1.1 2.0 1 1 0 1 1 1 1 KR domain 3HCDH_N PF02737.18 EME69276.1 - 0.1 12.5 0.3 0.23 11.3 0.3 1.7 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CoA_transf_3 PF02515.17 EME69277.1 - 7.8e-68 229.2 0.0 9.8e-68 228.9 0.0 1.0 1 0 0 1 1 1 1 CoA-transferase family III CoA_transf_3 PF02515.17 EME69278.1 - 1e-71 242.1 0.0 1.2e-71 241.7 0.0 1.0 1 0 0 1 1 1 1 CoA-transferase family III ThiS PF02597.20 EME69279.1 - 4.5e-10 40.0 0.0 5.1e-10 39.8 0.0 1.0 1 0 0 1 1 1 1 ThiS family Ald_Xan_dh_C2 PF02738.18 EME69280.1 - 6.3e-153 510.1 0.2 7.7e-153 509.9 0.2 1.1 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.22 EME69280.1 - 1.1e-26 93.3 0.2 4.4e-26 91.4 0.0 2.1 2 0 0 2 2 2 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Fer2_2 PF01799.20 EME69281.1 - 6.5e-32 109.4 0.3 6.5e-32 109.4 0.3 1.6 2 0 0 2 2 2 1 [2Fe-2S] binding domain Fer2 PF00111.27 EME69281.1 - 4e-07 29.9 1.1 4e-07 29.9 1.1 2.3 2 1 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.6 EME69281.1 - 3.8e-05 23.6 0.7 6.5e-05 22.9 0.7 1.5 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain DUF1815 PF08844.10 EME69281.1 - 0.02 14.9 0.2 0.056 13.4 0.2 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF1815) PhnG PF06754.12 EME69281.1 - 0.054 13.4 0.1 0.078 12.9 0.1 1.3 1 0 0 1 1 1 0 Phosphonate metabolism protein PhnG Fer2_4 PF13510.6 EME69281.1 - 0.068 13.2 1.5 0.23 11.5 1.5 2.0 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain FAD_binding_5 PF00941.21 EME69282.1 - 1.5e-43 148.5 0.0 2.5e-43 147.8 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain in molybdopterin dehydrogenase CO_deh_flav_C PF03450.17 EME69282.1 - 1.2e-24 86.4 0.3 2.7e-24 85.3 0.3 1.5 1 0 0 1 1 1 1 CO dehydrogenase flavoprotein C-terminal domain MM_CoA_mutase PF01642.22 EME69283.1 - 3.5e-192 639.5 0.1 4.2e-192 639.3 0.1 1.0 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase B12-binding PF02310.19 EME69284.1 - 6.8e-17 61.6 0.1 7.7e-17 61.5 0.1 1.1 1 0 0 1 1 1 1 B12 binding domain PGM_PMM_I PF02878.16 EME69284.1 - 0.021 14.5 0.0 0.026 14.3 0.0 1.2 1 0 0 1 1 1 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Acyl-CoA_dh_1 PF00441.24 EME69285.1 - 7.6e-42 143.1 3.6 1.2e-41 142.4 3.6 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 EME69285.1 - 1.2e-26 92.7 0.0 2e-26 92.0 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 EME69285.1 - 7.9e-25 87.7 3.4 1.5e-24 86.8 3.4 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 EME69285.1 - 6.9e-24 84.7 0.0 2.2e-23 83.1 0.0 1.9 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain HpaB_N PF11794.8 EME69285.1 - 0.0032 17.2 0.2 0.008 15.9 0.2 1.6 1 1 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase N terminal Hydantoinase_B PF02538.14 EME69286.1 - 3e-141 471.3 0.1 3.4e-141 471.2 0.1 1.0 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase Hydantoinase_A PF01968.18 EME69287.1 - 3.5e-89 298.9 1.0 2.9e-87 292.6 0.0 2.2 2 0 0 2 2 2 2 Hydantoinase/oxoprolinase Hydant_A_N PF05378.13 EME69287.1 - 1.5e-45 155.1 1.7 1.6e-45 155.0 0.5 1.6 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase N-terminal region AMP-binding PF00501.28 EME69288.1 - 2.4e-101 339.4 0.0 3e-101 339.1 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 EME69288.1 - 3.6e-16 59.9 1.3 6.9e-16 59.0 0.1 2.1 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain MarR PF01047.22 EME69289.1 - 3.7e-09 36.4 0.3 9.3e-09 35.1 0.0 1.8 3 0 0 3 3 3 1 MarR family MarR_2 PF12802.7 EME69289.1 - 1.1e-06 28.4 0.0 2.4e-06 27.3 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 EME69289.1 - 2.3e-05 24.8 0.0 6.1e-05 23.4 0.0 1.8 2 0 0 2 2 2 1 Winged helix DNA-binding domain PadR PF03551.14 EME69289.1 - 0.038 14.0 0.0 0.058 13.4 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HxlR PF01638.17 EME69289.1 - 0.078 12.8 0.0 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 HxlR-like helix-turn-helix Oxidored_FMN PF00724.20 EME69290.1 - 2.4e-45 155.3 0.2 5.6e-26 91.6 0.1 3.1 2 1 1 3 3 3 3 NADH:flavin oxidoreductase / NADH oxidase family Dus PF01207.17 EME69290.1 - 0.001 18.3 0.0 0.002 17.3 0.0 1.4 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) Peripla_BP_6 PF13458.6 EME69291.1 - 4.1e-68 230.6 1.7 5e-68 230.3 1.7 1.0 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 EME69291.1 - 2.6e-25 89.2 0.1 3.2e-25 88.9 0.1 1.0 1 0 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.28 EME69291.1 - 1.5e-13 50.6 0.0 2.1e-13 50.1 0.0 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_4 PF13407.6 EME69291.1 - 0.073 12.6 0.1 0.13 11.8 0.1 1.5 1 1 0 1 1 1 0 Periplasmic binding protein domain BPD_transp_2 PF02653.16 EME69292.1 - 2.7e-34 118.5 46.9 3.3e-34 118.3 46.9 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 EME69293.1 - 7.2e-39 133.6 31.3 9.7e-39 133.1 31.3 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component DNAPolymera_Pol PF11590.8 EME69293.1 - 9.7 6.2 6.2 2.1 8.3 0.8 2.7 2 1 1 3 3 3 0 DNA polymerase catalytic subunit Pol ABC_tran PF00005.27 EME69294.1 - 1.1e-25 90.8 0.0 1.4e-25 90.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.8 EME69294.1 - 4.6e-06 26.4 0.3 9.5e-06 25.4 0.3 1.5 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_21 PF13304.6 EME69294.1 - 7.2e-06 26.0 1.5 0.029 14.2 0.3 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_25 PF13481.6 EME69294.1 - 0.00018 21.1 0.0 0.00038 20.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 EME69294.1 - 0.00053 19.7 0.0 0.001 18.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 EME69294.1 - 0.0013 19.1 0.0 0.0026 18.2 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 EME69294.1 - 0.0015 18.4 0.0 0.0026 17.7 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_33 PF13671.6 EME69294.1 - 0.0073 16.5 0.0 0.015 15.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_27 PF13514.6 EME69294.1 - 0.0094 15.6 0.0 0.044 13.4 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA PF00004.29 EME69294.1 - 0.015 15.7 0.0 0.12 12.8 0.0 2.1 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) SRP54 PF00448.22 EME69294.1 - 0.018 14.7 0.0 0.027 14.1 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain MukB PF04310.12 EME69294.1 - 0.019 14.8 0.1 0.028 14.2 0.1 1.2 1 0 0 1 1 1 0 MukB N-terminal AAA_28 PF13521.6 EME69294.1 - 0.032 14.5 0.0 0.089 13.0 0.0 1.8 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 EME69294.1 - 0.039 13.9 0.0 0.087 12.7 0.0 1.5 1 0 0 1 1 1 0 NACHT domain SMC_N PF02463.19 EME69294.1 - 0.05 13.0 0.0 0.14 11.6 0.0 1.6 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain MMR_HSR1 PF01926.23 EME69294.1 - 0.051 13.7 0.0 0.063 13.4 0.0 1.5 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_22 PF13401.6 EME69294.1 - 0.051 13.8 0.0 0.11 12.8 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.6 EME69294.1 - 0.059 13.9 0.0 0.089 13.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 EME69294.1 - 0.12 12.0 0.1 0.19 11.4 0.1 1.6 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 EME69294.1 - 0.14 11.9 0.0 0.75 9.5 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_14 PF13173.6 EME69294.1 - 0.14 12.2 0.0 0.3 11.1 0.0 1.5 2 0 0 2 2 1 0 AAA domain RNA_helicase PF00910.22 EME69294.1 - 0.17 12.3 0.0 0.27 11.6 0.0 1.3 1 0 0 1 1 1 0 RNA helicase AAA_24 PF13479.6 EME69294.1 - 0.19 11.4 0.0 0.53 10.0 0.0 1.6 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.27 EME69295.1 - 4.2e-32 111.5 0.0 5.7e-32 111.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 EME69295.1 - 3.2e-05 23.9 0.2 0.018 14.8 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 EME69295.1 - 0.0021 17.7 0.1 0.0046 16.7 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain MukB PF04310.12 EME69295.1 - 0.0041 17.0 0.2 0.0077 16.1 0.2 1.4 1 0 0 1 1 1 1 MukB N-terminal SMC_N PF02463.19 EME69295.1 - 0.021 14.3 0.0 5.7 6.3 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 EME69295.1 - 0.03 14.6 0.8 0.32 11.3 0.8 2.1 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.22 EME69295.1 - 0.064 12.9 0.8 0.13 11.8 0.8 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain SbcCD_C PF13558.6 EME69295.1 - 0.097 12.9 0.1 2 8.7 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.6 EME69295.1 - 0.099 12.3 0.5 0.28 10.9 0.5 1.7 1 1 0 1 1 1 0 AAA domain AAA_7 PF12775.7 EME69295.1 - 0.15 11.6 0.1 0.22 11.0 0.1 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_19 PF13245.6 EME69295.1 - 0.34 11.2 1.6 0.62 10.4 1.6 1.8 1 1 0 1 1 1 0 AAA domain MCPsignal PF00015.21 EME69296.1 - 6.7e-25 87.9 18.4 6.7e-25 87.9 18.4 2.9 2 1 1 3 3 3 1 Methyl-accepting chemotaxis protein (MCP) signalling domain sCache_2 PF17200.4 EME69296.1 - 8.8e-12 45.1 0.0 3.1e-11 43.4 0.0 2.0 1 0 0 1 1 1 1 Single Cache domain 2 dCache_2 PF08269.11 EME69296.1 - 5.3e-06 25.8 0.0 1.4e-05 24.5 0.0 1.6 1 0 0 1 1 1 1 Cache domain BLOC1_2 PF10046.9 EME69296.1 - 0.0099 16.2 4.1 3.5 8.0 0.3 3.2 3 0 0 3 3 3 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 YabA PF06156.13 EME69296.1 - 0.071 13.7 0.8 5.6 7.7 0.1 3.1 2 1 0 3 3 3 0 Initiation control protein YabA DUF1664 PF07889.12 EME69296.1 - 3.8 7.6 11.1 3.1 7.9 0.9 3.4 2 2 1 3 3 3 0 Protein of unknown function (DUF1664) NPV_P10 PF05531.12 EME69296.1 - 4.2 7.9 7.5 32 5.1 0.2 3.9 3 1 0 3 3 3 0 Nucleopolyhedrovirus P10 protein DUF948 PF06103.11 EME69296.1 - 5.1 7.4 14.6 2.6 8.4 1.4 4.2 1 1 2 4 4 4 0 Bacterial protein of unknown function (DUF948) AMP-binding PF00501.28 EME69297.1 - 3.5e-82 276.3 0.0 4.4e-82 275.9 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 EME69297.1 - 2.3e-24 86.1 0.4 5.8e-24 84.9 0.4 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Ribonuc_L-PSP PF01042.21 EME69298.1 - 2e-20 73.0 0.2 2.5e-20 72.7 0.2 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP TPR_15 PF13429.6 EME69298.1 - 0.017 14.3 0.0 0.021 14.1 0.0 1.1 1 0 0 1 1 1 0 Tetratricopeptide repeat DDE_Tnp_IS66_C PF13817.6 EME69299.1 - 4.8e-11 42.7 0.0 7.1e-11 42.1 0.0 1.3 1 0 0 1 1 1 1 IS66 C-terminal element HTH_Tnp_1 PF01527.20 EME69300.1 - 1.8e-13 50.6 1.1 3.1e-13 49.8 1.1 1.3 1 0 0 1 1 1 1 Transposase HTH_23 PF13384.6 EME69300.1 - 0.0011 18.7 1.1 0.0026 17.5 1.1 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.6 EME69300.1 - 0.0014 18.7 3.6 0.0025 17.9 2.3 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain CENP-B_N PF04218.13 EME69300.1 - 0.018 14.6 0.1 0.031 13.9 0.1 1.3 1 0 0 1 1 1 0 CENP-B N-terminal DNA-binding domain TnpB_IS66 PF05717.13 EME69301.1 - 7.9e-40 134.9 0.1 8.8e-40 134.7 0.1 1.0 1 0 0 1 1 1 1 IS66 Orf2 like protein DDE_Tnp_IS66 PF03050.14 EME69302.1 - 2.2e-24 86.4 0.1 2.8e-24 86.1 0.1 1.1 1 0 0 1 1 1 1 Transposase IS66 family DDE_Tnp_IS66_C PF13817.6 EME69302.1 - 9.3e-18 64.2 0.0 1.6e-17 63.5 0.0 1.4 1 0 0 1 1 1 1 IS66 C-terminal element DZR PF12773.7 EME69303.1 - 0.015 15.3 0.9 0.022 14.8 0.9 1.2 1 0 0 1 1 1 0 Double zinc ribbon GATase PF00117.28 EME69304.1 - 3.6e-18 66.0 0.0 4.3e-18 65.8 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.14 EME69304.1 - 1.1e-06 28.4 0.0 1.4e-06 28.0 0.0 1.1 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain SNO PF01174.19 EME69304.1 - 0.00027 20.8 0.0 0.009 15.9 0.0 2.0 2 0 0 2 2 2 1 SNO glutamine amidotransferase family Peptidase_C26 PF07722.13 EME69304.1 - 0.0054 16.5 0.2 0.023 14.4 0.2 1.9 1 1 0 1 1 1 1 Peptidase C26 DJ-1_PfpI PF01965.24 EME69304.1 - 0.14 12.0 0.1 0.2 11.5 0.1 1.2 1 0 0 1 1 1 0 DJ-1/PfpI family His_biosynth PF00977.21 EME69305.1 - 3.1e-62 210.0 0.1 3.6e-62 209.8 0.1 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein ThiG PF05690.14 EME69305.1 - 8.4e-08 31.8 2.9 0.0022 17.4 1.0 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG NMO PF03060.15 EME69305.1 - 2e-07 30.7 4.5 0.00091 18.7 3.0 2.2 2 0 0 2 2 2 2 Nitronate monooxygenase Dus PF01207.17 EME69305.1 - 2.9e-07 29.9 0.4 0.017 14.3 0.1 2.2 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) TMP-TENI PF02581.17 EME69305.1 - 2e-05 24.0 2.1 0.002 17.5 1.1 2.4 2 0 0 2 2 2 2 Thiamine monophosphate synthase DHO_dh PF01180.21 EME69305.1 - 9.3e-05 21.8 0.9 0.048 12.9 0.7 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase F_bP_aldolase PF01116.20 EME69305.1 - 0.00026 20.6 0.0 0.02 14.4 0.0 2.3 2 1 0 2 2 2 1 Fructose-bisphosphate aldolase class-II IMPDH PF00478.25 EME69305.1 - 0.00029 20.0 2.7 0.13 11.3 1.5 2.2 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain G3P_antiterm PF04309.12 EME69305.1 - 0.00053 19.4 0.6 0.055 12.9 0.0 2.3 2 0 0 2 2 2 1 Glycerol-3-phosphate responsive antiterminator Glu_synthase PF01645.17 EME69305.1 - 0.0041 16.3 0.5 0.028 13.6 0.0 2.0 2 0 0 2 2 2 1 Conserved region in glutamate synthase FMN_dh PF01070.18 EME69305.1 - 0.011 14.7 3.4 1.6 7.7 1.6 2.2 2 0 0 2 2 2 0 FMN-dependent dehydrogenase Sulfotransfer_1 PF00685.27 EME69306.1 - 5.2e-16 58.9 0.0 1.6e-15 57.3 0.0 1.7 1 1 0 1 1 1 1 Sulfotransferase domain Sulfotransfer_3 PF13469.6 EME69306.1 - 7.5e-06 26.5 0.0 0.00083 19.8 0.1 2.1 1 1 0 2 2 2 2 Sulfotransferase family Radical_SAM PF04055.21 EME69307.1 - 1.8e-16 61.0 0.0 2.4e-16 60.5 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.6 EME69307.1 - 2.4e-10 40.8 0.6 4.7e-10 39.8 0.6 1.5 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 EME69307.1 - 2.4e-05 24.6 0.0 4.4e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 EME69307.1 - 0.00028 21.0 0.0 0.0006 19.9 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain B12-binding PF02310.19 EME69308.1 - 1.9e-07 31.1 0.0 3.9e-07 30.1 0.0 1.5 1 0 0 1 1 1 1 B12 binding domain Radical_SAM PF04055.21 EME69308.1 - 6.2e-07 29.9 0.0 1.4e-06 28.8 0.0 1.6 1 0 0 1 1 1 1 Radical SAM superfamily RNase_T PF00929.24 EME69309.1 - 2.5e-09 37.9 0.0 3.4e-09 37.5 0.0 1.2 1 0 0 1 1 1 1 Exonuclease DUF5051 PF16473.5 EME69309.1 - 0.032 14.2 0.0 0.061 13.3 0.0 1.7 1 1 0 1 1 1 0 3' exoribonuclease, RNase T-like EamA PF00892.20 EME69310.1 - 1.6e-24 86.6 31.2 1.7e-12 47.7 10.8 2.0 2 0 0 2 2 2 2 EamA-like transporter family DUF975 PF06161.11 EME69310.1 - 0.088 12.6 0.2 0.15 11.8 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF975) NTP_transferase PF00483.23 EME69311.1 - 3.4e-41 141.5 0.0 4.6e-41 141.0 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 EME69311.1 - 2.8e-10 40.8 0.0 5.2e-10 39.9 0.0 1.5 2 0 0 2 2 2 1 MobA-like NTP transferase domain CBS PF00571.28 EME69311.1 - 8.9e-07 29.3 7.4 0.005 17.3 0.2 3.1 3 0 0 3 3 3 2 CBS domain ISP1_C PF18161.1 EME69311.1 - 0.17 11.9 0.0 10 6.1 0.0 2.3 2 0 0 2 2 2 0 ISP1 C-terminal Hexapep PF00132.24 EME69312.1 - 6.9e-14 50.9 17.2 0.00028 20.5 5.6 4.1 1 1 1 3 3 3 3 Bacterial transferase hexapeptide (six repeats) PglD_N PF17836.1 EME69312.1 - 1e-09 38.9 0.1 1e-09 38.9 0.1 1.7 2 0 0 2 2 2 1 PglD N-terminal domain Hexapep_2 PF14602.6 EME69312.1 - 1.2e-06 28.1 18.5 0.0013 18.4 7.2 4.3 3 1 1 4 4 4 3 Hexapeptide repeat of succinyl-transferase RNase_T PF00929.24 EME69313.1 - 2e-08 34.9 0.0 3.6e-08 34.1 0.0 1.4 1 1 0 1 1 1 1 Exonuclease DUF5051 PF16473.5 EME69313.1 - 0.00034 20.6 0.0 0.0067 16.4 0.0 2.3 2 1 0 2 2 2 1 3' exoribonuclease, RNase T-like NeuB PF03102.14 EME69314.1 - 9e-91 303.6 0.0 1.1e-90 303.4 0.0 1.1 1 0 0 1 1 1 1 NeuB family SAF PF08666.12 EME69314.1 - 1.3e-06 28.9 0.2 1.1e-05 26.0 0.0 2.5 3 0 0 3 3 3 1 SAF domain Epimerase_2 PF02350.19 EME69315.1 - 8.9e-86 287.9 0.0 1e-85 287.7 0.0 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase DRTGG PF07085.12 EME69315.1 - 0.0033 17.2 1.3 0.021 14.6 0.1 2.7 2 1 1 3 3 3 1 DRTGG domain DegT_DnrJ_EryC1 PF01041.17 EME69316.1 - 2.1e-86 290.5 0.0 2.5e-86 290.2 0.0 1.1 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.21 EME69316.1 - 0.00031 20.0 0.0 0.00051 19.3 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 EME69316.1 - 0.0081 14.7 0.1 0.013 14.1 0.1 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme OKR_DC_1 PF01276.20 EME69316.1 - 0.018 13.8 0.0 0.025 13.3 0.0 1.1 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain Beta_elim_lyase PF01212.21 EME69316.1 - 0.086 12.1 0.2 0.11 11.7 0.2 1.3 1 1 0 1 1 1 0 Beta-eliminating lyase Chlam_PMP PF02415.17 EME69316.1 - 0.51 10.9 2.6 1.1 9.9 2.6 1.6 1 0 0 1 1 1 0 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat Epimerase PF01370.21 EME69317.1 - 9.8e-31 107.0 0.0 1.4e-30 106.5 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 EME69317.1 - 2e-23 83.3 0.0 4.4e-23 82.2 0.0 1.5 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 EME69317.1 - 5.7e-15 55.1 0.0 8e-15 54.6 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.6 EME69317.1 - 1.3e-11 44.8 0.0 2.2e-11 44.0 0.0 1.4 1 0 0 1 1 1 1 NAD(P)H-binding RmlD_sub_bind PF04321.17 EME69317.1 - 5.7e-07 28.9 0.0 7.5e-07 28.5 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain NmrA PF05368.13 EME69317.1 - 7.2e-05 22.5 0.0 0.00012 21.8 0.0 1.4 1 0 0 1 1 1 1 NmrA-like family NAD_binding_4 PF07993.12 EME69317.1 - 0.0046 16.1 0.1 0.54 9.4 0.0 2.6 2 1 0 2 2 2 1 Male sterility protein Polysacc_synt_2 PF02719.15 EME69317.1 - 0.012 14.8 0.0 0.031 13.4 0.0 1.8 1 1 0 1 1 1 0 Polysaccharide biosynthesis protein Pyr_redox_2 PF07992.14 EME69317.1 - 0.034 13.4 0.0 0.054 12.7 0.0 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase adh_short PF00106.25 EME69317.1 - 0.2 11.1 0.0 0.41 10.1 0.0 1.5 1 0 0 1 1 1 0 short chain dehydrogenase Asn_synthase PF00733.21 EME69318.1 - 1.2e-85 288.4 0.3 1.6e-85 287.9 0.3 1.1 1 0 0 1 1 1 1 Asparagine synthase GATase_7 PF13537.6 EME69318.1 - 2.5e-43 146.9 0.0 4e-43 146.2 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 EME69318.1 - 6e-41 139.8 0.0 1.2e-40 138.8 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain DUF3700 PF12481.8 EME69318.1 - 0.015 14.7 0.0 0.027 13.9 0.0 1.3 1 0 0 1 1 1 0 Aluminium induced protein QueC PF06508.13 EME69318.1 - 0.12 11.8 0.0 0.24 10.9 0.0 1.3 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC NAD_synthase PF02540.17 EME69318.1 - 0.25 10.4 0.0 0.35 9.9 0.0 1.2 1 0 0 1 1 1 0 NAD synthase Glycos_transf_2 PF00535.26 EME69319.1 - 9.8e-27 93.8 0.0 1.3e-26 93.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 EME69319.1 - 1.5e-08 34.8 0.1 2.1e-08 34.3 0.1 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 EME69319.1 - 0.0004 20.0 0.0 0.00062 19.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 NTP_transf_3 PF12804.7 EME69319.1 - 0.0017 18.7 0.1 0.0034 17.8 0.1 1.3 1 1 0 1 1 1 1 MobA-like NTP transferase domain DUF4350 PF14258.6 EME69319.1 - 0.0088 16.5 0.2 1.1 9.8 0.0 2.7 1 1 1 2 2 2 1 Domain of unknown function (DUF4350) Glyco_transf_21 PF13506.6 EME69319.1 - 0.069 12.6 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase family 21 Methyltransf_23 PF13489.6 EME69320.1 - 1.8e-12 47.4 0.0 2.4e-12 47.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 EME69320.1 - 1.2e-10 41.9 0.1 4.8e-10 39.9 0.1 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 EME69320.1 - 2.9e-08 34.3 0.1 1.6e-06 28.7 0.1 2.4 1 1 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 EME69320.1 - 4.8e-08 32.8 0.0 1.7e-07 31.1 0.0 1.7 1 1 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_31 PF13847.6 EME69320.1 - 1e-05 25.4 0.0 0.1 12.4 0.0 2.1 2 0 0 2 2 2 2 Methyltransferase domain Methyltransf_12 PF08242.12 EME69320.1 - 1.1e-05 26.0 0.1 0.00071 20.3 0.1 2.3 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 EME69320.1 - 0.0005 19.7 0.0 0.00079 19.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_8 PF05148.15 EME69320.1 - 0.0019 18.1 0.1 0.0025 17.7 0.1 1.2 1 0 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_18 PF12847.7 EME69320.1 - 0.041 13.8 0.0 0.061 13.2 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain B12-binding PF02310.19 EME69321.1 - 4.3e-19 68.7 0.0 8.4e-19 67.8 0.0 1.4 1 0 0 1 1 1 1 B12 binding domain Radical_SAM PF04055.21 EME69321.1 - 6.3e-18 65.7 0.0 1.6e-16 61.2 0.0 2.4 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.6 EME69321.1 - 0.0015 18.6 0.0 0.0035 17.5 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 EME69321.1 - 0.0075 16.5 0.0 0.018 15.3 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Peripla_BP_6 PF13458.6 EME69321.1 - 0.011 15.4 0.0 0.02 14.5 0.0 1.3 1 0 0 1 1 1 0 Periplasmic binding protein Radical_SAM_N PF08497.10 EME69321.1 - 0.21 10.8 0.0 0.34 10.1 0.0 1.3 1 0 0 1 1 1 0 Radical SAM N-terminal adh_short_C2 PF13561.6 EME69324.1 - 2.4e-43 148.4 0.0 1.6e-22 80.3 0.0 2.0 2 0 0 2 2 2 2 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 EME69324.1 - 1.9e-29 102.5 0.0 1e-21 77.3 0.0 2.2 2 0 0 2 2 2 2 short chain dehydrogenase KR PF08659.10 EME69324.1 - 0.0021 18.0 0.2 0.0049 16.8 0.1 1.7 2 0 0 2 2 2 1 KR domain Pyr_redox PF00070.27 EME69324.1 - 0.022 15.3 0.3 0.053 14.1 0.2 1.7 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase GFO_IDH_MocA PF01408.22 EME69325.1 - 6.4e-15 56.0 0.0 1.1e-14 55.2 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_3 PF03447.16 EME69325.1 - 4.4e-05 24.1 0.1 8.7e-05 23.2 0.1 1.5 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain GFO_IDH_MocA_C PF02894.17 EME69325.1 - 0.00052 20.0 0.1 0.0012 18.9 0.1 1.6 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain Semialdhyde_dh PF01118.24 EME69325.1 - 0.16 12.4 0.0 0.26 11.7 0.0 1.4 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain Aminotran_3 PF00202.21 EME69326.1 - 1.3e-41 142.6 0.0 1.9e-41 142.1 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III CTP_transf_3 PF02348.19 EME69327.1 - 0.001 19.0 0.0 0.0075 16.2 0.0 2.0 1 1 0 1 1 1 1 Cytidylyltransferase Formyl_trans_N PF00551.19 EME69328.1 - 1e-12 48.2 0.0 1.5e-12 47.7 0.0 1.1 1 0 0 1 1 1 1 Formyl transferase Formyl_trans_C PF02911.18 EME69328.1 - 9e-11 41.9 0.0 1.6e-10 41.1 0.0 1.3 1 0 0 1 1 1 1 Formyl transferase, C-terminal domain AP_endonuc_2 PF01261.24 EME69329.1 - 6.4e-26 91.1 0.0 8.9e-26 90.6 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel NeuB PF03102.14 EME69330.1 - 1.4e-68 230.9 0.0 1.7e-68 230.7 0.0 1.0 1 0 0 1 1 1 1 NeuB family Hydrolase_3 PF08282.12 EME69331.1 - 4.1e-06 26.7 0.0 6.2e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 EME69331.1 - 0.00046 20.5 2.2 0.0088 16.4 0.1 2.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 EME69331.1 - 0.00048 20.6 0.4 0.0024 18.3 0.0 2.2 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase Radical_SAM PF04055.21 EME69332.1 - 5.7e-18 65.8 1.2 1.9e-17 64.1 0.7 2.0 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.19 EME69332.1 - 6e-15 55.3 0.0 1.3e-14 54.2 0.0 1.5 1 0 0 1 1 1 1 B12 binding domain Herpes_UL51 PF04540.13 EME69332.1 - 0.08 12.7 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 Herpesvirus UL51 protein Radical_SAM_N PF08497.10 EME69332.1 - 0.086 12.1 0.0 0.88 8.7 0.0 2.1 2 0 0 2 2 2 0 Radical SAM N-terminal NusG PF02357.19 EME69333.1 - 1.4e-22 80.0 0.0 2.3e-22 79.3 0.0 1.3 1 0 0 1 1 1 1 Transcription termination factor nusG KOW PF00467.29 EME69333.1 - 8.7e-05 22.3 0.0 0.00025 20.9 0.0 1.8 1 0 0 1 1 1 1 KOW motif HTH_24 PF13412.6 EME69334.1 - 2.8e-08 33.2 0.1 1.2e-07 31.1 0.1 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.6 EME69334.1 - 0.00096 19.6 0.0 0.0022 18.4 0.0 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.19 EME69334.1 - 0.012 15.5 0.0 0.025 14.4 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.6 EME69334.1 - 0.021 14.8 0.0 0.035 14.1 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix MarR_2 PF12802.7 EME69334.1 - 0.021 14.7 0.7 0.087 12.7 0.1 2.3 3 0 0 3 3 3 0 MarR family Sigma70_r4_2 PF08281.12 EME69334.1 - 0.024 14.3 0.0 0.11 12.2 0.0 2.1 2 0 0 2 2 2 0 Sigma-70, region 4 ELFV_dehydrog PF00208.21 EME69334.1 - 0.024 14.3 0.1 0.036 13.8 0.1 1.2 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase MarR PF01047.22 EME69334.1 - 0.039 13.9 0.0 0.1 12.5 0.0 1.7 1 0 0 1 1 1 0 MarR family Fe-ADH_2 PF13685.6 EME69334.1 - 0.045 13.5 0.0 0.065 12.9 0.0 1.2 1 0 0 1 1 1 0 Iron-containing alcohol dehydrogenase Asn_synthase PF00733.21 EME69335.1 - 2.7e-53 181.9 0.0 3.9e-53 181.4 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase GATase_7 PF13537.6 EME69335.1 - 3.9e-46 156.0 0.0 6.4e-46 155.3 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 EME69335.1 - 1.6e-41 141.7 0.2 4.7e-41 140.1 0.0 1.9 2 0 0 2 2 2 1 Glutamine amidotransferase domain DUF3700 PF12481.8 EME69335.1 - 0.078 12.4 0.0 0.13 11.7 0.0 1.2 1 0 0 1 1 1 0 Aluminium induced protein SIS_2 PF13580.6 EME69336.1 - 6.9e-24 84.4 0.5 8.7e-24 84.1 0.5 1.1 1 0 0 1 1 1 1 SIS domain SIS PF01380.22 EME69336.1 - 5.3e-06 26.3 0.0 8.3e-05 22.5 0.0 2.1 1 1 0 2 2 2 1 SIS domain Inositol_P PF00459.25 EME69337.1 - 2.7e-49 168.1 0.8 3.5e-49 167.8 0.8 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family Glycos_transf_1 PF00534.20 EME69338.1 - 4.7e-29 101.1 0.0 6.4e-29 100.7 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 EME69338.1 - 5.9e-28 98.0 0.0 8.9e-28 97.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 EME69338.1 - 5.2e-07 29.8 0.2 1e-05 25.6 0.2 2.8 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 EME69338.1 - 4.9e-06 26.8 0.0 9.5e-06 25.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 EME69338.1 - 0.0014 19.1 8.2 0.0014 19.1 8.2 2.6 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 EME69339.1 - 1.7e-16 60.4 0.4 4.6e-16 59.0 0.4 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 EME69339.1 - 0.0067 16.4 0.1 0.096 12.7 0.1 2.2 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 EME69339.1 - 0.066 13.7 13.9 0.074 13.5 8.8 2.9 1 1 1 2 2 2 0 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.6 EME69340.1 - 3e-06 27.3 6.1 5.3e-05 23.3 6.1 2.3 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 EME69340.1 - 0.00065 20.2 17.3 0.00065 20.2 17.3 2.9 1 1 1 2 2 2 1 Glycosyl transferase 4-like domain Asn_synthase PF00733.21 EME69341.1 - 3.5e-72 244.0 0.0 4.3e-72 243.7 0.0 1.1 1 0 0 1 1 1 1 Asparagine synthase GATase_7 PF13537.6 EME69341.1 - 3.7e-42 143.1 0.0 6.2e-42 142.4 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 EME69341.1 - 5.1e-39 133.5 0.0 9e-39 132.7 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain NAD_synthase PF02540.17 EME69341.1 - 0.19 10.8 0.0 0.27 10.3 0.0 1.2 1 0 0 1 1 1 0 NAD synthase Methyltr_RsmB-F PF01189.17 EME69342.1 - 2e-42 145.1 0.0 2.9e-42 144.6 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F NusB PF01029.18 EME69342.1 - 6.1e-24 84.8 0.0 1.1e-23 83.9 0.0 1.4 1 0 0 1 1 1 1 NusB family Methyltransf_25 PF13649.6 EME69342.1 - 6.4e-05 23.6 0.1 0.00043 20.9 0.1 2.3 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 EME69342.1 - 0.0017 17.9 0.1 0.0092 15.5 0.1 2.0 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_11 PF08241.12 EME69342.1 - 0.0025 18.4 0.0 0.014 16.1 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.19 EME69342.1 - 0.18 11.9 0.1 0.6 10.2 0.1 1.8 1 1 0 1 1 1 0 FtsJ-like methyltransferase Glyco_trans_4_4 PF13579.6 EME69343.1 - 2.5e-20 73.6 0.5 2.5e-20 73.6 0.5 2.2 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.6 EME69343.1 - 2e-19 70.3 0.0 4.1e-19 69.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.20 EME69343.1 - 5.7e-17 61.8 0.0 1e-16 61.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 EME69343.1 - 8e-14 52.2 0.1 2.3e-13 50.8 0.1 1.8 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 EME69343.1 - 0.00018 21.8 0.0 0.00061 20.1 0.0 1.9 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_9 PF01075.17 EME69344.1 - 1.2e-27 96.9 0.0 1.6e-27 96.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase family 9 (heptosyltransferase) UDPG_MGDP_dh_C PF03720.15 EME69345.1 - 4.7e-18 65.5 0.0 6.1e-18 65.2 0.0 1.2 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain UDPG_MGDP_dh PF00984.19 EME69345.1 - 0.00013 22.1 0.0 0.00023 21.3 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain Glyco_transf_4 PF13439.6 EME69345.1 - 0.013 15.5 0.0 0.36 10.8 0.0 2.1 2 0 0 2 2 2 0 Glycosyltransferase Family 4 PASTA PF03793.19 EME69345.1 - 0.13 12.1 0.0 0.25 11.2 0.0 1.4 1 0 0 1 1 1 0 PASTA domain BPD_transp_1 PF00528.22 EME69346.1 - 4.1e-41 140.8 8.9 4.1e-41 140.8 8.9 1.6 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 EME69347.1 - 7.3e-33 113.9 10.3 7.3e-33 113.9 10.3 1.6 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 EME69347.1 - 0.079 13.0 1.1 0.079 13.0 1.1 2.9 3 0 0 3 3 3 0 N-terminal TM domain of oligopeptide transport permease C NiFe_hyd_3_EhaA PF17367.2 EME69347.1 - 0.62 10.2 3.9 0.28 11.4 0.3 2.2 2 1 0 2 2 2 0 NiFe-hydrogenase-type-3 Eha complex subunit A Usp PF00582.26 EME69348.1 - 2.6e-16 60.4 6.9 2.2e-07 31.5 1.1 3.1 2 1 0 2 2 2 2 Universal stress protein family Rsa3 PF14615.6 EME69348.1 - 0.00065 19.2 0.0 0.0013 18.3 0.0 1.5 1 0 0 1 1 1 1 Ribosome-assembly protein 3 T4SS_CagC PF16943.5 EME69348.1 - 0.037 14.2 0.0 0.071 13.3 0.0 1.4 1 0 0 1 1 1 0 Cag pathogenicity island, type IV secretory system DUF3008 PF11450.8 EME69348.1 - 0.14 12.3 0.6 12 6.2 0.0 2.4 2 0 0 2 2 2 0 Protein of unknwon function (DUF3008) SPOR PF05036.13 EME69349.1 - 3.8e-09 36.8 0.5 1.4e-08 35.0 0.0 2.2 2 0 0 2 2 2 1 Sporulation related domain TPR_16 PF13432.6 EME69349.1 - 8.2e-08 32.8 3.0 1.7e-07 31.8 0.8 2.7 3 0 0 3 3 2 1 Tetratricopeptide repeat TPR_6 PF13174.6 EME69349.1 - 3.2e-05 24.3 4.1 0.00027 21.4 1.1 3.0 3 0 0 3 3 2 1 Tetratricopeptide repeat TPR_2 PF07719.17 EME69349.1 - 5.3e-05 23.0 0.3 0.0012 18.8 0.1 2.5 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_19 PF14559.6 EME69349.1 - 9.1e-05 22.9 0.1 0.00032 21.1 0.1 2.0 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_12 PF13424.6 EME69349.1 - 0.00075 19.7 0.9 0.0022 18.2 0.9 1.8 1 1 0 1 1 1 1 Tetratricopeptide repeat TPR_9 PF13371.6 EME69349.1 - 0.0029 17.7 0.9 0.0073 16.4 0.1 2.2 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_8 PF13181.6 EME69349.1 - 0.0046 17.1 0.1 0.013 15.7 0.1 1.8 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_1 PF00515.28 EME69349.1 - 0.0079 16.0 0.2 0.037 13.9 0.2 2.0 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_14 PF13428.6 EME69349.1 - 0.0096 16.7 4.7 1.3 10.1 0.1 3.8 3 1 1 4 4 3 2 Tetratricopeptide repeat TPR_17 PF13431.6 EME69349.1 - 0.01 16.1 0.2 0.037 14.4 0.1 2.0 2 0 0 2 2 2 0 Tetratricopeptide repeat HemY_N PF07219.13 EME69349.1 - 0.028 14.6 0.1 0.17 12.1 0.1 2.3 1 1 1 2 2 2 0 HemY protein N-terminus TPR_10 PF13374.6 EME69349.1 - 0.04 13.8 3.6 0.23 11.4 0.4 2.8 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_3 PF07720.12 EME69349.1 - 0.2 11.7 0.8 0.42 10.7 0.8 1.4 1 0 0 1 1 1 0 Tetratricopeptide repeat SHOCT PF09851.9 EME69349.1 - 0.21 11.4 0.6 0.6 9.9 0.0 2.2 2 0 0 2 2 2 0 Short C-terminal domain TPR_4 PF07721.14 EME69349.1 - 1.5 9.7 0.1 1.5 9.7 0.1 4.3 5 0 0 5 5 3 0 Tetratricopeptide repeat LPAM_2 PF13627.6 EME69349.1 - 2.6 8.0 6.1 5.1 7.1 6.1 1.5 1 0 0 1 1 1 0 Prokaryotic lipoprotein-attachment site CHAD PF05235.14 EME69350.1 - 4e-56 190.5 5.2 6.1e-56 189.9 5.2 1.3 1 0 0 1 1 1 1 CHAD domain CYTH PF01928.21 EME69350.1 - 4.1e-26 92.0 0.0 1e-25 90.7 0.0 1.7 2 0 0 2 2 2 1 CYTH domain EAL PF00563.20 EME69351.1 - 1.1e-70 237.8 0.0 3.6e-70 236.2 0.0 1.8 2 0 0 2 2 2 1 EAL domain GGDEF PF00990.21 EME69351.1 - 8.4e-46 155.7 0.1 1.5e-45 154.9 0.1 1.4 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain PAS_9 PF13426.7 EME69351.1 - 4e-31 107.4 0.0 2.4e-10 40.6 0.0 3.4 3 0 0 3 3 3 3 PAS domain PAS PF00989.25 EME69351.1 - 5.3e-31 106.9 0.0 6.2e-13 48.8 0.0 3.4 3 0 0 3 3 3 3 PAS fold PAS_4 PF08448.10 EME69351.1 - 2.6e-26 92.0 1.6 3.6e-11 43.3 0.1 3.5 3 0 0 3 3 3 3 PAS fold PAS_3 PF08447.12 EME69351.1 - 2.5e-20 72.5 0.3 1.1e-08 35.2 0.0 3.5 3 0 0 3 3 3 3 PAS fold PAS_8 PF13188.7 EME69351.1 - 4.9e-14 52.0 0.1 0.0029 17.6 0.0 4.0 3 0 0 3 3 3 3 PAS domain PAS_10 PF13596.6 EME69351.1 - 1.7e-05 25.4 0.0 0.0011 19.5 0.0 2.6 2 0 0 2 2 2 1 PAS domain DUF4169 PF13770.6 EME69352.1 - 5e-19 68.3 15.4 5.4e-19 68.2 15.4 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4169) NARP1 PF12569.8 EME69352.1 - 0.64 8.9 7.0 0.69 8.8 7.0 1.0 1 0 0 1 1 1 0 NMDA receptor-regulated protein 1 Ammonium_transp PF00909.21 EME69353.1 - 6.9e-86 288.4 39.6 7.9e-86 288.2 39.6 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family HATPase_c PF02518.26 EME69354.1 - 4.5e-24 85.1 0.0 8.2e-24 84.3 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 EME69354.1 - 1e-17 64.3 0.1 3.6e-17 62.6 0.0 2.0 2 0 0 2 2 2 1 Response regulator receiver domain PAS_4 PF08448.10 EME69354.1 - 4.6e-15 55.8 1.2 6.9e-15 55.3 0.0 2.0 2 0 0 2 2 2 1 PAS fold HisKA PF00512.25 EME69354.1 - 1.2e-14 54.0 0.1 1.2e-14 54.0 0.1 4.1 3 1 2 5 5 5 1 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.7 EME69354.1 - 9.5e-10 38.7 0.0 2e-09 37.6 0.0 1.6 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 EME69354.1 - 1.2e-08 34.9 0.0 3.1e-08 33.6 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 EME69354.1 - 0.0016 18.4 0.0 0.0071 16.3 0.0 2.1 1 0 0 1 1 1 1 PAS domain PAS_7 PF12860.7 EME69354.1 - 0.0019 18.3 0.2 0.0068 16.6 0.1 2.1 2 0 0 2 2 2 1 PAS fold HATPase_c_2 PF13581.6 EME69354.1 - 0.0039 17.1 0.2 0.024 14.6 0.0 2.4 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 EME69354.1 - 0.088 12.6 0.0 0.18 11.6 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 EME69355.1 - 2.4e-48 162.9 0.9 2e-25 89.1 0.1 2.6 2 0 0 2 2 2 2 Response regulator receiver domain HATPase_c PF02518.26 EME69355.1 - 1.6e-23 83.4 0.1 9.6e-23 80.8 0.1 2.3 3 0 0 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 EME69355.1 - 2.1e-11 43.7 0.0 2.1e-11 43.7 0.0 2.7 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.6 EME69355.1 - 0.00035 20.4 0.0 0.012 15.5 0.0 2.4 2 0 0 2 2 2 1 GHKL domain HATPase_c_3 PF13589.6 EME69355.1 - 0.0032 17.3 0.0 0.02 14.7 0.0 2.3 3 0 0 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OKR_DC_1_N PF03709.15 EME69355.1 - 0.14 12.4 1.8 3.2 8.1 0.0 3.2 3 0 0 3 3 3 0 Orn/Lys/Arg decarboxylase, N-terminal domain CcdA PF07362.12 EME69355.1 - 0.3 11.5 4.1 0.51 10.8 0.0 2.7 2 0 0 2 2 2 0 Post-segregation antitoxin CcdA CheB_methylest PF01339.17 EME69356.1 - 3.2e-51 173.4 0.2 5.9e-51 172.6 0.1 1.5 2 0 0 2 2 2 1 CheB methylesterase Response_reg PF00072.24 EME69356.1 - 4.5e-20 71.9 0.8 8.2e-20 71.0 0.3 1.7 2 0 0 2 2 2 1 Response regulator receiver domain Response_reg PF00072.24 EME69357.1 - 3e-22 78.9 0.0 5.8e-22 78.0 0.0 1.5 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.26 EME69357.1 - 1.1e-14 54.8 0.0 2.1e-14 54.0 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Hpt PF01627.23 EME69357.1 - 7.9e-14 51.7 2.8 7.9e-14 51.7 2.8 2.9 2 1 0 2 2 2 1 Hpt domain CheW PF01584.19 EME69357.1 - 9.1e-14 51.3 0.9 2.5e-13 49.9 0.6 1.9 2 0 0 2 2 2 1 CheW-like domain TelA PF05816.11 EME69357.1 - 0.024 13.7 0.1 0.042 12.9 0.1 1.3 1 0 0 1 1 1 0 Toxic anion resistance protein (TelA) HATPase_c_2 PF13581.6 EME69357.1 - 0.065 13.2 0.0 0.15 12.1 0.0 1.7 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain MCPsignal PF00015.21 EME69358.1 - 3.8e-30 104.9 41.0 4.3e-29 101.5 25.3 3.1 1 1 0 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 EME69358.1 - 2.3e-11 43.9 0.1 2.3e-11 43.9 0.1 4.8 5 1 0 5 5 5 1 HAMP domain PilJ PF13675.6 EME69358.1 - 1.3e-08 34.9 2.6 1.3e-08 34.9 2.6 4.6 2 1 0 3 3 3 1 Type IV pili methyl-accepting chemotaxis transducer N-term DUF948 PF06103.11 EME69358.1 - 0.24 11.7 26.3 0.69 10.2 1.7 4.9 1 1 3 4 4 4 0 Bacterial protein of unknown function (DUF948) TnpV PF14198.6 EME69358.1 - 3.1 7.8 0.0 3.1 7.8 0.0 3.3 3 1 0 3 3 3 0 Transposon-encoded protein TnpV CheW PF01584.19 EME69359.1 - 4.8e-27 94.3 0.0 6.6e-27 93.8 0.0 1.1 1 0 0 1 1 1 1 CheW-like domain CheR PF01739.18 EME69360.1 - 2.4e-50 170.7 0.0 3.2e-50 170.3 0.0 1.2 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain TPR_2 PF07719.17 EME69360.1 - 4.6e-06 26.3 5.8 0.035 14.2 0.3 4.5 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_16 PF13432.6 EME69360.1 - 0.00022 21.8 3.1 0.00022 21.8 3.1 3.5 2 1 1 3 3 3 1 Tetratricopeptide repeat Methyltransf_12 PF08242.12 EME69360.1 - 0.00037 21.2 0.1 0.022 15.5 0.0 2.9 2 1 0 2 2 2 1 Methyltransferase domain TPR_1 PF00515.28 EME69360.1 - 0.0011 18.7 0.5 0.042 13.7 0.1 3.5 4 0 0 4 4 4 1 Tetratricopeptide repeat Methyltransf_25 PF13649.6 EME69360.1 - 0.0025 18.5 0.5 0.38 11.5 0.0 3.1 3 1 0 3 3 2 1 Methyltransferase domain TPR_14 PF13428.6 EME69360.1 - 0.0029 18.3 12.7 0.046 14.6 1.6 4.5 3 1 1 4 4 3 2 Tetratricopeptide repeat TPR_11 PF13414.6 EME69360.1 - 0.0063 16.2 0.2 4 7.2 0.0 2.6 2 0 0 2 2 2 2 TPR repeat CheR_N PF03705.15 EME69360.1 - 0.011 15.4 0.0 0.024 14.3 0.0 1.6 1 0 0 1 1 1 0 CheR methyltransferase, all-alpha domain TPR_9 PF13371.6 EME69360.1 - 0.053 13.7 5.9 0.12 12.5 0.8 2.7 1 1 1 2 2 2 0 Tetratricopeptide repeat TPR_17 PF13431.6 EME69360.1 - 0.062 13.7 0.0 7 7.3 0.0 3.0 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_8 PF13181.6 EME69360.1 - 0.097 12.9 0.0 1.6 9.2 0.0 2.6 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_6 PF13174.6 EME69360.1 - 2 9.2 4.5 58 4.6 0.0 4.4 4 0 0 4 4 4 0 Tetratricopeptide repeat CheW PF01584.19 EME69361.1 - 4.1e-20 71.8 0.1 4.8e-20 71.6 0.1 1.1 1 0 0 1 1 1 1 CheW-like domain AAA_31 PF13614.6 EME69362.1 - 1.5e-47 161.8 0.2 2.3e-47 161.2 0.2 1.2 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 EME69362.1 - 3.7e-19 69.1 0.1 5e-19 68.6 0.1 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_NifH PF00142.18 EME69362.1 - 5.8e-12 45.6 0.4 2.1e-09 37.2 0.1 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CBP_BcsQ PF06564.12 EME69362.1 - 3e-10 40.0 0.0 2.1e-09 37.2 0.0 1.9 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ MipZ PF09140.11 EME69362.1 - 4.8e-09 35.9 0.2 2.1e-05 24.0 0.1 2.2 2 0 0 2 2 2 2 ATPase MipZ ParA PF10609.9 EME69362.1 - 5.7e-09 35.8 2.4 4.1e-08 33.0 2.5 2.1 2 1 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 EME69362.1 - 0.00055 19.2 0.7 0.0011 18.3 0.5 1.5 2 0 0 2 2 2 1 Anion-transporting ATPase sCache_2 PF17200.4 EME69363.1 - 7.2e-12 45.4 0.1 8.7e-12 45.2 0.1 1.1 1 0 0 1 1 1 1 Single Cache domain 2 dCache_2 PF08269.11 EME69363.1 - 1e-09 38.1 0.1 1.1e-09 38.0 0.1 1.1 1 0 0 1 1 1 1 Cache domain MCPsignal PF00015.21 EME69364.1 - 5e-31 107.8 24.6 5e-31 107.8 24.6 3.9 2 1 1 3 3 3 1 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 EME69364.1 - 9.8e-09 35.5 4.3 6.7e-08 32.8 0.4 3.8 3 0 0 3 3 3 1 HAMP domain 4HB_MCP_1 PF12729.7 EME69364.1 - 1.9e-06 27.5 0.0 1.9e-06 27.5 0.0 3.7 3 2 0 3 3 3 1 Four helix bundle sensory module for signal transduction COG5 PF10392.9 EME69364.1 - 0.022 14.9 1.0 5.3 7.2 0.3 2.7 2 0 0 2 2 2 0 Golgi transport complex subunit 5 DUF948 PF06103.11 EME69364.1 - 0.19 12.0 30.2 0.11 12.8 1.7 6.1 3 2 4 7 7 7 0 Bacterial protein of unknown function (DUF948) DUF1664 PF07889.12 EME69364.1 - 0.24 11.5 17.6 0.84 9.7 0.3 5.1 3 2 2 5 5 5 0 Protein of unknown function (DUF1664) Laminin_II PF06009.12 EME69364.1 - 0.45 10.5 22.2 0.48 10.4 4.3 3.5 2 1 1 3 3 3 0 Laminin Domain II GCN5L1 PF06320.13 EME69364.1 - 1.6 8.9 10.7 0.72 10.0 4.1 3.2 2 2 1 3 3 3 0 GCN5-like protein 1 (GCN5L1) ZapB PF06005.12 EME69364.1 - 2.2 8.8 6.0 72 3.9 0.0 3.5 3 1 0 3 3 3 0 Cell division protein ZapB Laminin_I PF06008.14 EME69364.1 - 5.2 6.7 30.6 0.76 9.4 14.5 3.9 2 1 1 4 4 4 0 Laminin Domain I Patatin PF01734.22 EME69365.1 - 7.4e-23 81.8 0.0 1.3e-22 81.0 0.0 1.4 1 0 0 1 1 1 1 Patatin-like phospholipase PAS_7 PF12860.7 EME69366.1 - 2.9e-42 143.5 0.0 5.6e-42 142.5 0.0 1.5 1 0 0 1 1 1 1 PAS fold HATPase_c PF02518.26 EME69366.1 - 2e-32 112.0 0.0 4.2e-32 111.0 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 EME69366.1 - 1.1e-27 96.4 0.0 2.1e-27 95.5 0.0 1.5 1 0 0 1 1 1 1 Response regulator receiver domain HisKA PF00512.25 EME69366.1 - 1.3e-21 76.4 1.6 3.1e-21 75.2 0.1 2.5 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.10 EME69366.1 - 0.0039 17.4 0.0 0.0099 16.1 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 EME69366.1 - 0.13 12.4 0.0 0.5 10.5 0.0 2.0 1 0 0 1 1 1 0 PAS domain Acetyltransf_5 PF13444.6 EME69367.1 - 6.7e-33 113.4 0.3 1.2e-32 112.6 0.3 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 EME69367.1 - 0.015 15.3 0.0 2 8.5 0.0 2.2 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain PMSR PF01625.21 EME69369.1 - 4.8e-64 215.2 0.4 5.7e-64 214.9 0.4 1.1 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase Hemerythrin PF01814.23 EME69370.1 - 3.9e-10 40.5 5.2 4.7e-10 40.2 5.2 1.1 1 0 0 1 1 1 1 Hemerythrin HHE cation binding domain WXG100 PF06013.12 EME69370.1 - 0.1 12.9 0.8 0.94 9.8 0.1 2.2 2 0 0 2 2 2 0 Proteins of 100 residues with WXG CheX PF13690.6 EME69371.1 - 1.1e-09 38.3 0.0 1.5e-09 37.9 0.0 1.2 1 0 0 1 1 1 1 Chemotaxis phosphatase CheX Biotin_lipoyl PF00364.22 EME69372.1 - 4.2e-11 42.5 0.1 1.7e-10 40.6 0.1 1.8 1 1 0 1 1 1 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 EME69372.1 - 0.03 14.1 0.0 0.2 11.5 0.0 2.1 1 1 1 2 2 2 0 Biotin-lipoyl like E1_dh PF00676.20 EME69373.1 - 1.4e-41 142.4 0.0 2e-41 141.9 0.0 1.1 1 0 0 1 1 1 1 Dehydrogenase E1 component Transket_pyr PF02779.24 EME69373.1 - 4e-30 104.8 0.0 8.4e-30 103.8 0.0 1.5 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 EME69373.1 - 1.3e-22 80.0 0.0 2.4e-22 79.1 0.0 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain DXP_synthase_N PF13292.6 EME69373.1 - 0.037 13.2 0.0 0.062 12.5 0.0 1.3 1 0 0 1 1 1 0 1-deoxy-D-xylulose-5-phosphate synthase Patatin PF01734.22 EME69374.1 - 3.8e-10 40.3 4.6 7.5e-09 36.1 4.6 2.2 1 1 0 1 1 1 1 Patatin-like phospholipase Acyl_transf_1 PF00698.21 EME69375.1 - 1.7e-61 208.5 0.7 2.5e-61 207.9 0.7 1.3 1 0 0 1 1 1 1 Acyl transferase domain KR PF08659.10 EME69375.1 - 5.2e-60 202.4 0.5 1.2e-59 201.2 0.2 1.8 2 0 0 2 2 2 1 KR domain ketoacyl-synt PF00109.26 EME69375.1 - 3.6e-58 197.1 0.9 1.5e-57 195.1 0.3 2.3 2 0 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain PS-DH PF14765.6 EME69375.1 - 1.1e-49 169.3 0.3 2.3e-49 168.3 0.3 1.5 1 0 0 1 1 1 1 Polyketide synthase dehydratase Ketoacyl-synt_C PF02801.22 EME69375.1 - 3.2e-39 133.6 0.0 1.3e-38 131.7 0.0 2.2 1 0 0 1 1 1 1 Beta-ketoacyl synthase, C-terminal domain Thioesterase PF00975.20 EME69375.1 - 6e-28 98.5 0.0 4.2e-27 95.8 0.0 2.1 2 0 0 2 2 2 1 Thioesterase domain adh_short PF00106.25 EME69375.1 - 3e-12 46.4 0.3 8.1e-12 45.0 0.0 1.8 2 0 0 2 2 2 1 short chain dehydrogenase KAsynt_C_assoc PF16197.5 EME69375.1 - 2e-09 37.9 0.0 3.6e-09 37.1 0.0 1.4 1 0 0 1 1 1 1 Ketoacyl-synthetase C-terminal extension adh_short_C2 PF13561.6 EME69375.1 - 1.2e-08 34.8 0.0 2.9e-08 33.6 0.0 1.6 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase PP-binding PF00550.25 EME69375.1 - 7.5e-08 32.6 0.1 1.8e-07 31.4 0.1 1.7 1 0 0 1 1 1 1 Phosphopantetheine attachment site GDP_Man_Dehyd PF16363.5 EME69375.1 - 0.0053 16.2 0.0 0.0084 15.5 0.0 1.3 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 EME69375.1 - 0.023 14.2 0.0 0.037 13.5 0.0 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family Sacchrp_dh_NADP PF03435.18 EME69375.1 - 0.2 11.9 0.6 0.54 10.5 0.6 1.7 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain AAA_16 PF13191.6 EME69377.1 - 3.5e-43 147.9 0.6 3.5e-43 147.9 0.6 3.5 4 0 0 4 4 3 1 AAA ATPase domain Pkinase PF00069.25 EME69377.1 - 3.5e-27 95.4 0.0 6.6e-27 94.5 0.0 1.4 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 EME69377.1 - 4.3e-14 52.4 0.0 9.7e-14 51.3 0.0 1.5 1 0 0 1 1 1 1 Protein tyrosine kinase GAF PF01590.26 EME69377.1 - 1.1e-11 45.4 0.2 5.6e-11 43.2 0.2 2.4 1 0 0 1 1 1 1 GAF domain PAS_9 PF13426.7 EME69377.1 - 1e-09 38.6 0.0 2.3e-09 37.5 0.0 1.6 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.10 EME69377.1 - 1.7e-08 34.7 0.0 1.3e-07 31.8 0.0 2.7 2 0 0 2 2 2 1 PAS fold GAF_2 PF13185.6 EME69377.1 - 2.6e-08 34.2 3.8 7e-08 32.9 0.4 3.3 4 0 0 4 4 3 1 GAF domain GAF_3 PF13492.6 EME69377.1 - 5.9e-08 33.1 0.2 1.6e-07 31.8 0.2 1.8 1 0 0 1 1 1 1 GAF domain TPR_MalT PF17874.1 EME69377.1 - 1.4e-05 24.7 6.2 1.4e-05 24.7 6.2 2.3 3 0 0 3 3 3 1 MalT-like TPR region PAS_8 PF13188.7 EME69377.1 - 7.1e-05 22.7 0.0 0.00053 19.9 0.0 2.5 2 0 0 2 2 2 1 PAS domain PAS_3 PF08447.12 EME69377.1 - 0.00012 22.3 0.0 0.00061 20.0 0.0 2.2 2 0 0 2 2 2 1 PAS fold PAS PF00989.25 EME69377.1 - 0.0024 17.8 0.0 0.006 16.6 0.0 1.7 1 0 0 1 1 1 1 PAS fold Kinase-like PF14531.6 EME69377.1 - 0.014 14.7 0.0 0.024 14.0 0.0 1.3 1 0 0 1 1 1 0 Kinase-like Kdo PF06293.14 EME69377.1 - 0.02 14.3 0.1 0.049 13.0 0.0 1.7 2 0 0 2 2 2 0 Lipopolysaccharide kinase (Kdo/WaaP) family TPR_14 PF13428.6 EME69377.1 - 0.11 13.4 7.4 0.69 10.9 1.2 4.4 2 0 0 2 2 2 0 Tetratricopeptide repeat AAA_22 PF13401.6 EME69377.1 - 0.12 12.6 0.0 0.57 10.5 0.0 2.1 1 1 0 1 1 1 0 AAA domain TPR_12 PF13424.6 EME69377.1 - 2.4 8.5 16.4 0.83 10.0 4.1 5.3 4 0 0 4 4 4 0 Tetratricopeptide repeat CbiQ PF02361.16 EME69378.1 - 1.3e-28 100.1 10.0 1.5e-28 99.9 10.0 1.0 1 0 0 1 1 1 1 Cobalt transport protein TraW_N PF12477.8 EME69379.1 - 0.65 10.0 5.3 0.87 9.6 1.0 2.7 2 0 0 2 2 2 0 Sex factor F TraW protein N terminal CbiM PF01891.16 EME69380.1 - 1.6e-48 165.3 23.4 1.8e-48 165.1 23.4 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region DUF2970 PF11174.8 EME69380.1 - 0.23 11.3 0.1 0.23 11.3 0.1 3.5 4 1 0 4 4 4 0 Protein of unknown function (DUF2970) DUF4198 PF10670.9 EME69381.1 - 1.9e-48 165.7 0.2 2.2e-48 165.5 0.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4198) SSF PF00474.17 EME69382.1 - 8.4e-101 337.8 38.4 1.1e-100 337.3 38.4 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family DUF2818 PF10993.8 EME69382.1 - 0.038 14.5 0.4 0.038 14.5 0.4 3.8 4 1 0 4 4 4 0 Protein of unknown function (DUF2818) EamA PF00892.20 EME69383.1 - 1.3e-23 83.7 38.9 1.9e-12 47.5 15.3 2.0 2 0 0 2 2 2 2 EamA-like transporter family DUF4536 PF15055.6 EME69383.1 - 0.03 14.6 0.7 6.4 7.1 0.1 3.3 3 0 0 3 3 3 0 Domain of unknown function (DUF4536) LigT_PEase PF02834.16 EME69386.1 - 3.9e-33 113.5 0.3 2.1e-15 56.6 0.0 2.0 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.6 EME69386.1 - 1.3e-16 60.9 0.1 1.4e-16 60.7 0.1 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.9 EME69386.1 - 2.4e-07 30.9 0.0 4.9e-07 29.9 0.0 1.5 1 1 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain FIST_C PF10442.9 EME69387.1 - 7.8e-27 93.8 0.0 1.5e-26 92.9 0.0 1.5 1 0 0 1 1 1 1 FIST C domain FIST PF08495.10 EME69387.1 - 9.2e-19 68.1 0.1 4.9e-16 59.2 0.1 2.5 2 1 1 3 3 3 2 FIST N domain Lipase_GDSL_2 PF13472.6 EME69388.1 - 2.6e-26 93.1 0.1 3e-26 92.9 0.1 1.0 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family Lipase_GDSL PF00657.22 EME69388.1 - 2.1e-11 44.2 0.0 2.6e-11 43.9 0.0 1.1 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase Lipase_GDSL_3 PF14606.6 EME69388.1 - 0.22 11.6 0.0 1.8 8.6 0.0 2.0 1 1 0 1 1 1 0 GDSL-like Lipase/Acylhydrolase family ABC_tran PF00005.27 EME69389.1 - 2e-32 112.6 0.0 2.5e-32 112.3 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 EME69389.1 - 0.00016 21.6 0.0 0.028 14.2 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 EME69389.1 - 0.0011 18.7 0.1 0.0021 17.8 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain cobW PF02492.19 EME69389.1 - 0.0015 18.1 0.0 0.0028 17.3 0.0 1.4 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain SMC_N PF02463.19 EME69389.1 - 0.0021 17.5 0.0 1.1 8.7 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 EME69389.1 - 0.0073 16.7 0.2 0.011 16.1 0.2 1.4 1 1 0 1 1 1 1 AAA ATPase domain SbcCD_C PF13558.6 EME69389.1 - 0.022 15.0 0.0 0.65 10.3 0.0 2.4 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit RsgA_GTPase PF03193.16 EME69389.1 - 0.053 13.4 0.1 0.077 12.9 0.1 1.2 1 0 0 1 1 1 0 RsgA GTPase AAA_25 PF13481.6 EME69389.1 - 0.075 12.6 0.6 0.44 10.1 0.1 2.2 2 1 0 2 2 2 0 AAA domain AAA_33 PF13671.6 EME69389.1 - 0.12 12.5 0.1 0.24 11.6 0.0 1.5 2 0 0 2 2 2 0 AAA domain FtsK_SpoIIIE PF01580.18 EME69389.1 - 0.13 11.5 0.1 0.21 10.9 0.1 1.2 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_22 PF13401.6 EME69389.1 - 0.24 11.7 0.5 1.3 9.3 0.2 2.0 2 0 0 2 2 2 0 AAA domain FtsX PF02687.21 EME69390.1 - 3.3e-05 24.3 22.0 0.00076 19.9 6.9 5.7 6 1 1 7 7 7 2 FtsX-like permease family Bax1-I PF01027.20 EME69391.1 - 1.9e-66 223.8 33.9 2.1e-66 223.7 33.9 1.0 1 0 0 1 1 1 1 Inhibitor of apoptosis-promoting Bax1 DUF2189 PF09955.9 EME69392.1 - 8.3e-35 119.8 8.5 8.3e-35 119.8 8.5 2.5 3 0 0 3 3 3 1 Predicted integral membrane protein (DUF2189) DnaJ PF00226.31 EME69393.1 - 1.2e-06 28.6 0.0 2.8e-06 27.3 0.0 1.7 1 0 0 1 1 1 1 DnaJ domain CAP_N PF01213.19 EME69393.1 - 0.029 13.9 0.6 0.041 13.4 0.6 1.3 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal PSK_trans_fac PF07704.11 EME69393.1 - 9.7 7.0 7.4 35 5.2 0.2 2.7 2 1 1 3 3 3 0 Rv0623-like transcription factor EAL PF00563.20 EME69394.1 - 3.9e-73 245.9 0.1 3.6e-72 242.7 0.0 2.1 2 0 0 2 2 2 1 EAL domain GGDEF PF00990.21 EME69394.1 - 7.8e-37 126.5 0.0 1.3e-36 125.7 0.0 1.4 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain PAS_3 PF08447.12 EME69394.1 - 9.8e-22 77.1 0.0 4.2e-09 36.6 0.0 3.5 3 0 0 3 3 3 2 PAS fold PAS PF00989.25 EME69394.1 - 1.6e-19 69.9 0.0 3e-12 46.5 0.0 3.4 3 0 0 3 3 3 2 PAS fold PAS_9 PF13426.7 EME69394.1 - 2.5e-18 66.3 0.0 5.2e-10 39.5 0.0 3.5 3 0 0 3 3 3 3 PAS domain PAS_4 PF08448.10 EME69394.1 - 2.4e-15 56.7 2.9 6.7e-08 32.8 0.1 4.0 3 1 0 3 3 3 2 PAS fold PAS_8 PF13188.7 EME69394.1 - 8.3e-09 35.3 0.2 3.4e-07 30.1 0.0 3.1 2 0 0 2 2 2 1 PAS domain TerC PF03741.16 EME69395.1 - 9.1e-49 165.6 7.9 1.1e-48 165.3 7.9 1.1 1 0 0 1 1 1 1 Integral membrane protein TerC family DUF1700 PF08006.11 EME69395.1 - 0.014 14.9 1.5 0.027 14.0 1.5 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1700) DUF3470 PF11953.8 EME69396.1 - 2.3e-17 62.7 1.9 3.4e-17 62.1 1.9 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF3470) Fer4 PF00037.27 EME69396.1 - 2.7e-10 39.6 21.7 1.7e-07 30.7 6.4 3.1 3 0 0 3 3 3 3 4Fe-4S binding domain Fer4_10 PF13237.6 EME69396.1 - 9e-08 32.1 8.8 7.8e-05 22.7 0.3 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 EME69396.1 - 2.8e-07 30.6 24.6 8.1e-05 22.7 14.9 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 EME69396.1 - 5.1e-07 30.2 28.0 3.4e-05 24.3 16.2 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 EME69396.1 - 7.6e-07 28.9 14.2 0.0017 18.3 3.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 EME69396.1 - 1.5e-06 29.0 9.2 0.00051 20.9 0.7 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 EME69396.1 - 1.6e-06 27.9 19.6 9.5e-05 22.3 5.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 EME69396.1 - 3.1e-06 27.2 11.4 0.0023 18.0 0.4 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 EME69396.1 - 6e-05 23.4 7.5 0.0024 18.3 0.1 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 EME69396.1 - 0.00013 22.2 15.7 0.00089 19.6 1.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 EME69396.1 - 0.00013 22.4 10.0 0.0041 17.6 1.3 2.2 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 EME69396.1 - 0.007 16.9 11.3 0.014 16.0 1.0 2.3 2 0 0 2 2 2 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_11 PF13247.6 EME69396.1 - 0.29 11.3 8.7 0.61 10.2 8.7 1.5 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 EME69396.1 - 2 9.5 20.4 0.8 10.8 7.5 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain ETF_QO PF05187.13 EME69396.1 - 3.2 7.9 8.4 1.2 9.4 2.3 2.2 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_20 PF14691.6 EME69396.1 - 5.4 6.8 14.1 0.21 11.3 3.9 2.1 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CarD_CdnL_TRCF PF02559.16 EME69397.1 - 1.7e-19 70.3 0.0 2.6e-19 69.7 0.0 1.3 1 0 0 1 1 1 1 CarD-like/TRCF domain DUF4197 PF13852.6 EME69399.1 - 1.2e-68 230.8 0.0 1.4e-68 230.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF4197) Nitroreductase PF00881.24 EME69400.1 - 6.1e-15 55.7 0.0 1.5e-14 54.4 0.0 1.6 1 1 0 1 1 1 1 Nitroreductase family Polysacc_deac_1 PF01522.21 EME69401.1 - 2.4e-22 79.1 0.0 3.3e-22 78.7 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide deacetylase HNH_5 PF14279.6 EME69402.1 - 6.8e-18 64.3 0.0 9e-18 63.9 0.0 1.2 1 0 0 1 1 1 1 HNH endonuclease HNH PF01844.23 EME69402.1 - 1.2e-13 51.0 0.0 1.6e-13 50.5 0.0 1.2 1 0 0 1 1 1 1 HNH endonuclease HNH_4 PF13395.6 EME69402.1 - 7.6e-06 25.7 0.0 1.5e-05 24.8 0.0 1.5 1 0 0 1 1 1 1 HNH endonuclease BCMA-Tall_bind PF09257.10 EME69402.1 - 0.048 13.8 1.2 0.074 13.2 0.0 1.9 2 0 0 2 2 2 0 BCMA, TALL-1 binding zf-C2H2_4 PF13894.6 EME69402.1 - 0.11 13.4 0.5 0.28 12.1 0.5 1.6 1 0 0 1 1 1 0 C2H2-type zinc finger Abhydrolase_2 PF02230.16 EME69403.1 - 1.4e-32 113.3 0.0 1.7e-32 113.0 0.0 1.0 1 0 0 1 1 1 1 Phospholipase/Carboxylesterase DLH PF01738.18 EME69403.1 - 1.4e-05 24.8 0.0 1.9e-05 24.3 0.0 1.1 1 0 0 1 1 1 1 Dienelactone hydrolase family FSH1 PF03959.13 EME69403.1 - 6.2e-05 22.7 0.0 9.1e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 Serine hydrolase (FSH1) Abhydrolase_6 PF12697.7 EME69403.1 - 0.00015 22.5 13.5 0.00029 21.5 11.7 1.7 1 1 1 2 2 2 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.21 EME69403.1 - 0.00021 20.8 0.0 0.0022 17.5 0.0 2.0 2 0 0 2 2 2 1 Prolyl oligopeptidase family Abhydrolase_3 PF07859.13 EME69403.1 - 0.0012 18.8 0.5 0.039 13.8 0.4 2.1 1 1 1 2 2 2 1 alpha/beta hydrolase fold Abhydrolase_1 PF00561.20 EME69403.1 - 0.0013 18.4 0.2 0.015 15.0 0.1 2.2 1 1 1 2 2 2 1 alpha/beta hydrolase fold BAAT_C PF08840.11 EME69403.1 - 0.0028 17.6 0.0 0.4 10.6 0.1 2.1 1 1 1 2 2 2 1 BAAT / Acyl-CoA thioester hydrolase C terminal Hydrolase_4 PF12146.8 EME69403.1 - 0.0033 16.7 0.8 3.1 7.0 0.3 2.7 2 1 1 3 3 3 2 Serine aminopeptidase, S33 Esterase PF00756.20 EME69403.1 - 0.11 12.2 0.0 0.13 11.8 0.0 1.2 1 0 0 1 1 1 0 Putative esterase tRNA-synt_1c PF00749.21 EME69404.1 - 4.3e-50 170.4 0.0 5.1e-50 170.2 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain GST_C PF00043.25 EME69405.1 - 3.4e-12 46.4 0.0 5.5e-12 45.7 0.0 1.5 1 1 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C_3 PF14497.6 EME69405.1 - 1.7e-11 44.2 0.0 2.8e-11 43.5 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_N PF02798.20 EME69405.1 - 9.2e-10 38.7 0.0 1.8e-09 37.8 0.0 1.6 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.6 EME69405.1 - 4.9e-09 36.4 0.0 9.3e-09 35.5 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_C_2 PF13410.6 EME69405.1 - 1.4e-08 34.6 0.2 2.8e-08 33.7 0.2 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_N_3 PF13417.6 EME69405.1 - 1.6e-07 31.6 0.0 3.1e-07 30.7 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_C_6 PF17171.4 EME69405.1 - 0.016 15.0 0.0 0.029 14.2 0.0 1.5 1 0 0 1 1 1 0 Glutathione S-transferase, C-terminal domain Zn_ribbon_SprT PF17283.2 EME69406.1 - 0.0021 17.9 0.3 0.0027 17.5 0.3 1.2 1 0 0 1 1 1 1 SprT-like zinc ribbon domain DNA_RNApol_7kD PF03604.13 EME69406.1 - 0.01 15.5 1.1 0.37 10.5 0.0 2.3 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit A2L_zn_ribbon PF08792.10 EME69406.1 - 0.32 10.8 3.3 0.95 9.3 0.7 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain G_glu_transpept PF01019.21 EME69407.1 - 2.2e-123 412.8 0.0 2.5e-123 412.6 0.0 1.0 1 0 0 1 1 1 1 Gamma-glutamyltranspeptidase Helicase_Sgs1 PF11408.8 EME69407.1 - 0.24 11.5 0.0 0.45 10.6 0.0 1.4 1 0 0 1 1 1 0 Sgs1 RecQ helicase Phage_TAC_11 PF11836.8 EME69407.1 - 0.27 11.4 5.1 0.084 13.0 0.5 2.6 2 0 0 2 2 2 0 Phage tail tube protein, GTA-gp10 Pribosyltran PF00156.27 EME69408.1 - 2.7e-10 40.0 0.2 6.3e-10 38.8 0.2 1.5 1 1 0 1 1 1 1 Phosphoribosyl transferase domain Pox_F12L PF03337.13 EME69408.1 - 0.073 11.2 0.0 0.093 10.9 0.0 1.1 1 0 0 1 1 1 0 Poxvirus F12L protein 4HBT_2 PF13279.6 EME69409.1 - 5.7e-11 43.0 0.0 6.7e-11 42.7 0.0 1.0 1 0 0 1 1 1 1 Thioesterase-like superfamily 4HBT PF03061.22 EME69409.1 - 1.1e-08 35.2 0.0 1.5e-08 34.8 0.0 1.2 1 0 0 1 1 1 1 Thioesterase superfamily FUR PF01475.19 EME69410.1 - 1.3e-21 77.0 0.0 1.4e-21 76.8 0.0 1.0 1 0 0 1 1 1 1 Ferric uptake regulator family HTH_Crp_2 PF13545.6 EME69410.1 - 0.046 13.7 0.2 0.092 12.7 0.2 1.6 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_20 PF12840.7 EME69410.1 - 0.077 13.1 1.0 0.13 12.4 0.9 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain PadR PF03551.14 EME69410.1 - 0.13 12.2 0.0 0.25 11.3 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_Tnp_Tc3_2 PF01498.18 EME69410.1 - 0.13 12.5 0.3 0.38 11.0 0.0 1.8 2 0 0 2 2 2 0 Transposase GTP_EFTU PF00009.27 EME69411.1 - 4.4e-53 179.7 0.0 6.1e-53 179.2 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_C PF00679.24 EME69411.1 - 2.6e-20 72.2 0.0 5.6e-20 71.2 0.0 1.6 1 0 0 1 1 1 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.25 EME69411.1 - 1.2e-10 41.6 0.1 6.1e-10 39.4 0.0 2.2 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 EME69411.1 - 1.3e-06 28.5 0.1 2.6e-06 27.5 0.1 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase Septin PF00735.18 EME69411.1 - 0.0013 18.1 0.0 0.0021 17.4 0.0 1.2 1 0 0 1 1 1 1 Septin AIG1 PF04548.16 EME69411.1 - 0.055 12.8 0.0 0.088 12.1 0.0 1.2 1 0 0 1 1 1 0 AIG1 family FeoB_N PF02421.18 EME69411.1 - 0.13 11.8 0.0 0.77 9.3 0.0 2.2 1 1 0 1 1 1 0 Ferrous iron transport protein B EFG_II PF14492.6 EME69411.1 - 0.14 12.3 0.0 0.31 11.1 0.0 1.6 1 0 0 1 1 1 0 Elongation Factor G, domain II PfkB PF00294.24 EME69412.1 - 2.2e-41 142.1 0.3 2.8e-41 141.8 0.3 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase EI24 PF07264.11 EME69413.1 - 1.6e-22 80.6 15.6 1.9e-22 80.4 15.6 1.1 1 0 0 1 1 1 1 Etoposide-induced protein 2.4 (EI24) Oleosin PF01277.17 EME69413.1 - 0.11 12.3 0.1 0.11 12.3 0.1 2.9 3 1 0 3 3 3 0 Oleosin DUF4239 PF14023.6 EME69413.1 - 6.7 6.4 6.5 0.25 11.1 0.7 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF4239) Transglut_core2 PF13369.6 EME69414.1 - 0.072 12.7 0.0 0.076 12.6 0.0 1.1 1 0 0 1 1 1 0 Transglutaminase-like superfamily Ldt_C PF17969.1 EME69414.1 - 0.11 13.3 0.0 0.11 13.3 0.0 1.1 1 0 0 1 1 1 0 L,D-transpeptidase C-terminal domain OmpA PF00691.20 EME69415.1 - 0.097 13.1 0.0 0.26 11.7 0.0 1.7 1 0 0 1 1 1 0 OmpA family DUF4200 PF13863.6 EME69415.1 - 0.15 12.4 1.0 9.3 6.7 0.1 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF4200) DUF948 PF06103.11 EME69415.1 - 2.4 8.4 6.4 30 4.9 1.9 2.8 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) DUF2786 PF10979.8 EME69416.1 - 0.0044 16.9 0.9 0.011 15.6 0.9 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF2786) cNMP_binding PF00027.29 EME69417.1 - 1.2e-21 76.5 0.0 1.4e-21 76.3 0.0 1.1 1 0 0 1 1 1 1 Cyclic nucleotide-binding domain Polyketide_cyc PF03364.20 EME69418.1 - 1.4e-23 83.5 0.0 1.9e-23 83.1 0.0 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc2 PF10604.9 EME69418.1 - 6.1e-09 36.3 0.0 7.7e-09 36.0 0.0 1.0 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport S1 PF00575.23 EME69419.1 - 1.7e-98 323.0 20.4 1.1e-20 73.8 0.1 6.1 6 0 0 6 6 6 6 S1 RNA binding domain PCB_OB PF17092.5 EME69419.1 - 6.3e-11 43.0 4.2 0.78 10.5 0.0 6.2 2 2 4 6 6 6 3 Penicillin-binding protein OB-like domain S1_2 PF13509.6 EME69419.1 - 7.3e-09 35.6 4.1 0.39 10.8 0.1 6.1 5 1 0 5 5 5 2 S1 domain Peptidase_A4 PF01828.17 EME69419.1 - 0.0018 17.8 0.1 0.93 8.9 0.0 2.8 2 0 0 2 2 2 2 Peptidase A4 family SH3_2 PF07653.17 EME69419.1 - 0.0034 17.0 1.4 1.6 8.4 0.0 4.3 5 1 0 5 5 5 1 Variant SH3 domain RNase_II_C_S1 PF18614.1 EME69419.1 - 0.013 15.5 12.0 24 5.0 1.1 5.8 6 0 0 6 6 6 0 RNase II-type exonuclease C-terminal S1 domain PLD_C PF12357.8 EME69419.1 - 0.07 13.1 0.1 13 5.8 0.0 2.8 3 0 0 3 3 3 0 Phospholipase D C terminal SH3_4 PF06347.13 EME69419.1 - 0.088 12.6 0.0 0.43 10.4 0.0 2.1 2 0 0 2 2 2 0 Bacterial SH3 domain RuvA_N PF01330.21 EME69419.1 - 0.21 11.7 2.0 5 7.3 0.0 3.3 3 0 0 3 3 3 0 RuvA N terminal domain RNA_pol_Rbc25 PF08292.12 EME69419.1 - 0.24 11.6 2.9 5.9 7.1 0.0 3.9 5 0 0 5 5 5 0 RNA polymerase III subunit Rpc25 HupF_HypC PF01455.18 EME69419.1 - 0.35 11.1 1.8 36 4.6 0.0 3.8 4 0 0 4 4 4 0 HupF/HypC family Ribosomal_L19 PF01245.20 EME69419.1 - 0.42 10.6 4.1 23 4.9 0.9 4.2 3 1 1 4 4 4 0 Ribosomal protein L19 EXOSC1 PF10447.9 EME69419.1 - 0.53 10.9 4.5 59 4.3 0.0 4.3 5 0 0 5 5 5 0 Exosome component EXOSC1/CSL4 CsrA PF02599.16 EME69419.1 - 0.6 10.1 6.8 3.7 7.6 0.0 4.4 4 0 0 4 4 4 0 Global regulator protein family BPL_C PF02237.17 EME69419.1 - 0.78 9.7 11.2 8.9 6.3 0.0 5.8 6 1 0 6 6 6 0 Biotin protein ligase C terminal domain DUF150_C PF17384.2 EME69419.1 - 1.1 9.5 0.0 1.1 9.5 0.0 4.1 6 0 0 6 6 6 0 RimP C-terminal SH3 domain Cytidylate_kin PF02224.18 EME69420.1 - 2e-55 187.8 0.3 7.6e-55 185.9 0.3 1.7 1 1 0 1 1 1 1 Cytidylate kinase Cytidylate_kin2 PF13189.6 EME69420.1 - 1.4e-06 28.5 0.1 2.8e-06 27.6 0.1 1.5 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.6 EME69420.1 - 0.00014 22.4 0.0 0.00026 21.5 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.6 EME69420.1 - 0.00039 20.9 0.1 0.0019 18.6 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 EME69420.1 - 0.0041 17.3 0.0 0.017 15.3 0.0 1.9 2 0 0 2 2 2 1 AAA domain ADK PF00406.22 EME69420.1 - 0.017 15.2 0.0 0.027 14.6 0.0 1.3 1 0 0 1 1 1 0 Adenylate kinase SKI PF01202.22 EME69420.1 - 0.04 14.1 0.0 0.15 12.2 0.0 1.8 2 0 0 2 2 2 0 Shikimate kinase dNK PF01712.19 EME69420.1 - 0.08 12.8 0.0 0.12 12.2 0.0 1.2 1 0 0 1 1 1 0 Deoxynucleoside kinase EPSP_synthase PF00275.20 EME69421.1 - 3.4e-109 365.3 0.0 3.9e-109 365.1 0.0 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) FYDLN_acid PF09538.10 EME69422.1 - 4.2e-27 94.9 4.9 5.6e-27 94.5 4.9 1.2 1 0 0 1 1 1 1 Protein of unknown function (FYDLN_acid) DZR PF12773.7 EME69422.1 - 0.0014 18.7 1.9 0.0022 18.0 1.9 1.2 1 0 0 1 1 1 1 Double zinc ribbon Zn-ribbon_8 PF09723.10 EME69422.1 - 0.011 15.8 4.2 0.027 14.6 4.2 1.6 1 0 0 1 1 1 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 EME69422.1 - 0.042 13.8 8.1 1.5 8.9 0.6 2.3 1 1 1 2 2 2 0 Transposase zinc-ribbon domain DUF2318 PF10080.9 EME69422.1 - 0.085 13.0 0.3 0.12 12.5 0.3 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) zf-ribbon_3 PF13248.6 EME69422.1 - 0.12 11.8 5.3 0.13 11.8 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 EME69422.1 - 0.16 11.7 0.1 0.16 11.7 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain HypA PF01155.19 EME69422.1 - 0.17 11.9 1.7 0.27 11.2 1.7 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA OrfB_Zn_ribbon PF07282.11 EME69422.1 - 0.19 11.7 2.6 0.31 11.0 2.6 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-NADH-PPase PF09297.11 EME69422.1 - 0.25 11.0 5.9 5.8 6.7 0.2 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain CpXC PF14353.6 EME69422.1 - 0.3 11.1 0.0 0.3 11.1 0.0 2.2 1 1 1 2 2 2 0 CpXC protein TF_Zn_Ribbon PF08271.12 EME69422.1 - 3.2 7.4 11.0 0.78 9.3 6.5 2.4 2 1 0 2 2 2 0 TFIIB zinc-binding Hemerythrin PF01814.23 EME69423.1 - 2.6e-05 24.9 2.2 3.1e-05 24.6 2.2 1.1 1 0 0 1 1 1 1 Hemerythrin HHE cation binding domain DUF1907 PF08925.11 EME69425.1 - 0.17 11.3 0.1 0.62 9.4 0.0 1.7 2 0 0 2 2 2 0 Domain of Unknown Function (DUF1907) Tube PF17212.3 EME69426.1 - 0.013 15.5 0.0 0.021 14.9 0.0 1.3 1 1 0 1 1 1 0 Tail tubular protein Phage_int_SAM_4 PF13495.6 EME69428.1 - 3.1e-18 66.0 0.0 3.5e-18 65.8 0.0 1.1 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 EME69428.1 - 1.1e-06 28.9 0.0 1.3e-06 28.6 0.0 1.1 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain CorA PF01544.18 EME69429.1 - 0.083 12.2 0.1 0.083 12.2 0.1 1.0 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein Phage_integrase PF00589.22 EME69430.1 - 2.7e-31 108.7 0.0 3.4e-31 108.3 0.0 1.1 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.17 EME69431.1 - 1.7e-09 37.8 0.1 2.7e-09 37.2 0.1 1.2 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 EME69431.1 - 0.012 15.9 0.0 0.016 15.6 0.0 1.1 1 0 0 1 1 1 0 Phage integrase SAM-like domain Phage_int_SAM_4 PF13495.6 EME69431.1 - 0.022 15.2 0.0 0.031 14.7 0.0 1.2 1 0 0 1 1 1 0 Phage integrase, N-terminal SAM-like domain Phage_integrase PF00589.22 EME69432.1 - 3.2e-21 75.9 0.0 5.2e-21 75.2 0.0 1.3 1 0 0 1 1 1 1 Phage integrase family Phage_integrase PF00589.22 EME69433.1 - 2.6e-31 108.7 0.0 3.5e-31 108.3 0.0 1.2 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.17 EME69433.1 - 3.3e-09 36.9 0.0 1.2e-05 25.5 0.0 2.7 2 0 0 2 2 2 2 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 EME69433.1 - 0.054 13.8 0.0 0.52 10.7 0.0 2.3 2 0 0 2 2 2 0 Phage integrase SAM-like domain ParE_toxin PF05016.15 EME69434.1 - 5e-12 46.3 0.1 5.9e-12 46.0 0.1 1.1 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE ParD_antitoxin PF03693.14 EME69435.1 - 3.8e-11 43.3 0.1 4.3e-11 43.1 0.1 1.1 1 0 0 1 1 1 1 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH DUF2786 PF10979.8 EME69436.1 - 2.4e-11 43.3 1.4 5.9e-11 42.1 0.4 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF2786) MutS_III PF05192.18 EME69436.1 - 0.12 12.6 0.1 0.36 11.0 0.0 1.7 1 1 1 2 2 2 0 MutS domain III Histone_HNS PF00816.21 EME69436.1 - 0.18 12.7 0.1 0.48 11.3 0.1 1.7 1 0 0 1 1 1 0 H-NS histone family ResIII PF04851.15 EME69437.1 - 7.9e-16 58.5 0.0 1.4e-15 57.7 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD PF00270.29 EME69437.1 - 1.1e-07 31.9 0.0 2.2e-07 30.8 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 EME69437.1 - 0.00056 20.2 0.0 0.0011 19.2 0.0 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DUF86 PF01934.17 EME69438.1 - 7.9e-16 58.0 0.0 9.8e-16 57.7 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 NTP_transf_2 PF01909.23 EME69439.1 - 1.3e-13 51.1 0.0 1.5e-13 50.9 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 EME69439.1 - 1.1e-10 41.4 0.0 1.2e-10 41.3 0.0 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase TfuA PF07812.12 EME69439.1 - 0.0037 17.0 0.0 0.0044 16.7 0.0 1.1 1 0 0 1 1 1 1 TfuA-like protein MdcG PF10620.9 EME69439.1 - 0.0078 16.0 0.1 0.011 15.5 0.1 1.3 1 0 0 1 1 1 1 Phosphoribosyl-dephospho-CoA transferase MdcG HTH_17 PF12728.7 EME69441.1 - 0.046 13.9 0.1 0.069 13.4 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Phage_integrase PF00589.22 EME69443.1 - 1.7e-27 96.3 0.0 2.4e-27 95.8 0.0 1.3 1 0 0 1 1 1 1 Phage integrase family Arm-DNA-bind_3 PF13356.6 EME69443.1 - 5.7e-16 58.7 0.1 5.7e-16 58.7 0.1 1.9 2 0 0 2 2 2 1 Arm DNA-binding domain Phage_int_SAM_3 PF14659.6 EME69443.1 - 0.0049 17.1 0.0 0.0088 16.3 0.0 1.4 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain HTH_Tnp_1 PF01527.20 EME69444.1 - 1.2e-08 35.2 0.0 1.5e-08 34.9 0.0 1.1 1 0 0 1 1 1 1 Transposase rve_3 PF13683.6 EME69445.1 - 3.4e-32 110.0 0.1 9.4e-32 108.6 0.1 1.8 1 0 0 1 1 1 1 Integrase core domain rve PF00665.26 EME69445.1 - 2.8e-22 79.1 0.0 5.1e-22 78.3 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_21 PF13276.6 EME69445.1 - 7.9e-08 32.3 2.7 2e-07 31.1 2.7 1.6 1 0 0 1 1 1 1 HTH-like domain rve_2 PF13333.6 EME69445.1 - 5.9e-05 23.2 0.0 0.00011 22.3 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 EME69445.1 - 0.13 12.5 0.0 0.21 11.8 0.0 1.4 1 0 0 1 1 1 0 DDE domain HTH_Tnp_1 PF01527.20 EME69446.1 - 7.6e-24 83.8 0.1 9.1e-24 83.6 0.1 1.1 1 0 0 1 1 1 1 Transposase HTH_23 PF13384.6 EME69446.1 - 7.7e-07 28.7 0.2 3.6e-06 26.6 0.0 2.2 1 1 2 3 3 3 1 Homeodomain-like domain HTH_28 PF13518.6 EME69446.1 - 6.9e-05 22.9 0.0 0.00015 21.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.6 EME69446.1 - 0.0015 18.5 0.0 0.0037 17.2 0.0 1.9 1 1 0 1 1 1 1 Winged helix-turn helix HTH_Tnp_1_2 PF13022.6 EME69446.1 - 0.0026 17.9 0.0 0.0066 16.6 0.0 1.6 1 1 1 2 2 2 1 Helix-turn-helix of insertion element transposase HTH_24 PF13412.6 EME69446.1 - 0.033 13.8 0.5 0.96 9.1 0.0 2.6 2 1 1 3 3 3 0 Winged helix-turn-helix DNA-binding HTH_7 PF02796.15 EME69446.1 - 0.036 14.1 0.4 0.2 11.7 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase Potass_KdpF PF09604.10 EME69447.1 - 1e-11 44.5 1.3 1.5e-11 44.0 1.3 1.3 1 0 0 1 1 1 1 F subunit of K+-transporting ATPase (Potass_KdpF) Gram_pos_anchor PF00746.21 EME69447.1 - 0.097 12.6 0.2 0.097 12.6 0.2 1.1 1 0 0 1 1 1 0 LPXTG cell wall anchor motif KdpA PF03814.15 EME69448.1 - 4.9e-235 780.9 32.0 6e-235 780.6 32.0 1.0 1 0 0 1 1 1 1 Potassium-transporting ATPase A subunit DUF4131 PF13567.6 EME69448.1 - 0.052 13.2 0.5 0.052 13.2 0.5 4.2 5 0 0 5 5 5 0 Domain of unknown function (DUF4131) Hydrolase PF00702.26 EME69449.1 - 9.5e-33 114.3 1.5 9.5e-33 114.3 1.5 1.6 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase E1-E2_ATPase PF00122.20 EME69449.1 - 1.4e-29 102.9 4.2 1.4e-29 102.9 4.2 2.3 2 0 0 2 2 2 1 E1-E2 ATPase HAD PF12710.7 EME69449.1 - 8.2e-05 23.1 0.0 0.00051 20.5 0.0 2.3 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 EME69449.1 - 0.00027 20.8 0.3 0.0024 17.7 0.2 2.1 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase CBS PF00571.28 EME69449.1 - 0.017 15.5 0.1 0.053 14.0 0.1 1.8 1 0 0 1 1 1 0 CBS domain KdpC PF02669.15 EME69450.1 - 1.8e-73 246.2 0.0 2e-73 246.1 0.0 1.0 1 0 0 1 1 1 1 K+-transporting ATPase, c chain KdpD PF02702.17 EME69451.1 - 2.3e-93 311.5 0.1 3.7e-93 310.8 0.1 1.3 1 0 0 1 1 1 1 Osmosensitive K+ channel His kinase sensor domain DUF4118 PF13493.6 EME69451.1 - 3.5e-27 94.3 14.9 6.7e-27 93.4 14.9 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4118) HATPase_c PF02518.26 EME69451.1 - 3.5e-24 85.4 0.0 2.2e-23 82.9 0.0 2.3 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 EME69451.1 - 1.2e-12 47.7 4.6 2.5e-12 46.6 0.7 3.3 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain GAF_3 PF13492.6 EME69451.1 - 8.9e-11 42.2 0.1 2.6e-10 40.7 0.0 1.9 2 0 0 2 2 2 1 GAF domain Usp PF00582.26 EME69451.1 - 2e-10 41.3 4.4 2.2e-09 38.0 2.7 3.0 2 1 0 2 2 2 1 Universal stress protein family GAF_2 PF13185.6 EME69451.1 - 2e-06 28.2 1.4 2.3e-05 24.7 0.0 3.4 3 1 0 3 3 3 1 GAF domain HATPase_c_2 PF13581.6 EME69451.1 - 8.5e-05 22.5 0.0 0.00024 21.0 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain DUF2779 PF11074.8 EME69451.1 - 0.032 14.7 0.0 0.06 13.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function(DUF2779) DUF4126 PF13548.6 EME69451.1 - 0.12 12.1 12.3 0.32 10.7 12.3 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4126) Response_reg PF00072.24 EME69452.1 - 1.3e-26 93.0 0.0 3e-26 91.8 0.0 1.6 2 0 0 2 2 2 1 Response regulator receiver domain Trans_reg_C PF00486.28 EME69452.1 - 6.2e-24 83.9 0.0 5.6e-23 80.8 0.0 2.1 2 0 0 2 2 2 1 Transcriptional regulatory protein, C terminal SBP_bac_11 PF13531.6 EME69453.1 - 6.6e-43 147.1 5.3 7.6e-43 146.9 5.3 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 EME69453.1 - 6.1e-11 42.8 1.5 5.8e-10 39.6 1.5 2.0 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein DUF2541 PF10807.8 EME69453.1 - 0.033 14.2 0.7 0.085 12.9 0.2 1.9 2 1 1 3 3 3 0 Protein of unknown function (DUF2541) FUSC_2 PF13515.6 EME69453.1 - 0.057 13.5 0.1 0.088 12.9 0.1 1.4 1 0 0 1 1 1 0 Fusaric acid resistance protein-like TOBE PF03459.17 EME69454.1 - 4e-37 126.3 2.0 5.8e-18 65.0 0.1 2.3 2 0 0 2 2 2 2 TOBE domain HTH_1 PF00126.27 EME69454.1 - 6.4e-14 51.6 0.0 2.4e-13 49.8 0.0 2.0 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family TOBE_2 PF08402.10 EME69454.1 - 0.0054 16.9 0.5 0.87 9.8 0.0 2.5 1 1 1 2 2 2 2 TOBE domain FeoA PF04023.14 EME69454.1 - 0.028 14.7 0.1 0.12 12.7 0.0 2.0 2 0 0 2 2 2 0 FeoA domain HTH_8 PF02954.19 EME69454.1 - 0.061 13.1 0.6 0.37 10.6 0.1 2.5 3 0 0 3 3 3 0 Bacterial regulatory protein, Fis family HTH_50 PF18024.1 EME69454.1 - 0.16 11.6 0.1 0.36 10.5 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain PP2C_2 PF13672.6 EME69455.1 - 7.8e-16 58.3 3.0 1.1e-15 57.9 3.0 1.2 1 0 0 1 1 1 1 Protein phosphatase 2C PP2C PF00481.21 EME69455.1 - 8.2e-11 42.0 0.0 0.00011 21.9 0.0 2.1 2 0 0 2 2 2 2 Protein phosphatase 2C SpoIIE PF07228.12 EME69455.1 - 3e-06 27.3 1.4 7.4e-06 26.0 1.4 1.5 1 1 0 1 1 1 1 Stage II sporulation protein E (SpoIIE) DsrH PF04077.12 EME69455.1 - 0.065 13.4 0.0 0.14 12.3 0.0 1.5 1 0 0 1 1 1 0 DsrH like protein Pkinase PF00069.25 EME69456.1 - 9.4e-45 153.0 0.0 1.2e-44 152.7 0.0 1.1 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 EME69456.1 - 1.9e-26 92.9 0.0 2.7e-26 92.4 0.0 1.1 1 0 0 1 1 1 1 Protein tyrosine kinase DUF4384 PF14326.6 EME69456.1 - 1e-11 44.7 0.0 2.4e-11 43.6 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4384) APH PF01636.23 EME69456.1 - 2.1e-06 27.9 0.9 0.0018 18.3 0.0 2.9 2 1 1 3 3 3 2 Phosphotransferase enzyme family Kdo PF06293.14 EME69456.1 - 2.8e-05 23.6 0.0 4.4e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Haspin_kinase PF12330.8 EME69456.1 - 0.0022 17.0 0.0 0.003 16.5 0.0 1.1 1 0 0 1 1 1 1 Haspin like kinase domain Pkinase_fungal PF17667.1 EME69456.1 - 0.0026 16.6 0.0 0.0038 16.1 0.0 1.2 1 0 0 1 1 1 1 Fungal protein kinase RIO1 PF01163.22 EME69456.1 - 0.027 14.1 0.0 0.046 13.3 0.0 1.3 1 0 0 1 1 1 0 RIO1 family FTA2 PF13095.6 EME69456.1 - 0.038 13.6 0.0 0.064 12.9 0.0 1.4 1 1 0 1 1 1 0 Kinetochore Sim4 complex subunit FTA2 DUF1679 PF07914.11 EME69456.1 - 0.2 10.5 0.0 0.31 9.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1679) MMPL PF03176.15 EME69458.1 - 4.7e-22 78.4 19.9 2.4e-13 49.7 3.1 2.5 2 1 0 2 2 2 2 MMPL family cNMP_binding PF00027.29 EME69458.1 - 4.1e-20 71.7 0.1 1.2e-19 70.2 0.1 1.8 1 0 0 1 1 1 1 Cyclic nucleotide-binding domain FHA PF00498.26 EME69458.1 - 5.1e-11 42.8 0.1 1.4e-10 41.3 0.1 1.8 1 0 0 1 1 1 1 FHA domain Yop-YscD_cpl PF16697.5 EME69458.1 - 1.1e-06 28.8 0.0 2.5e-06 27.7 0.0 1.6 1 0 0 1 1 1 1 Inner membrane component of T3SS, cytoplasmic domain Sterol-sensing PF12349.8 EME69458.1 - 5e-06 26.4 24.2 2.8e-05 24.0 4.6 2.9 3 0 0 3 3 3 2 Sterol-sensing domain of SREBP cleavage-activation Dicty_CAR PF05462.11 EME69458.1 - 0.0038 16.4 0.2 0.011 14.9 0.2 1.7 1 0 0 1 1 1 1 Slime mold cyclic AMP receptor ACR_tran PF00873.19 EME69458.1 - 0.018 12.7 36.4 0.049 11.3 14.2 2.2 2 0 0 2 2 2 0 AcrB/AcrD/AcrF family LolA_like PF17131.4 EME69459.1 - 1.8e-47 161.5 0.8 2.3e-47 161.1 0.8 1.1 1 0 0 1 1 1 1 Outer membrane lipoprotein-sorting protein DUF1329 PF07044.11 EME69459.1 - 4.7e-08 32.7 2.5 0.0017 17.7 0.5 2.1 1 1 1 2 2 2 2 Protein of unknown function (DUF1329) Guanylate_cyc PF00211.20 EME69461.1 - 1.1e-26 93.5 0.0 1.8e-26 92.9 0.0 1.1 1 0 0 1 1 1 1 Adenylate and Guanylate cyclase catalytic domain CHASE2 PF05226.11 EME69461.1 - 7.5e-23 81.5 0.9 1.3e-22 80.8 0.9 1.3 1 0 0 1 1 1 1 CHASE2 domain cNMP_binding PF00027.29 EME69462.1 - 4.1e-14 52.4 0.1 5.3e-14 52.0 0.1 1.2 1 0 0 1 1 1 1 Cyclic nucleotide-binding domain Metallophos PF00149.28 EME69463.1 - 5.8e-06 26.9 0.5 3e-05 24.6 0.5 1.9 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 EME69463.1 - 1.7e-05 25.1 0.0 8.4e-05 22.8 0.0 2.1 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain DUF3390 PF11870.8 EME69463.1 - 0.21 12.0 0.5 0.51 10.7 0.3 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF3390) DUF3307 PF11750.8 EME69464.1 - 2.3e-11 43.8 2.1 4.1e-11 43.0 2.1 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF3307) OmpA PF00691.20 EME69465.1 - 6.9e-21 74.4 0.1 1.1e-20 73.8 0.1 1.3 1 0 0 1 1 1 1 OmpA family WD40 PF00400.32 EME69467.1 - 9.3e-24 83.3 10.4 0.0005 20.8 0.0 8.0 6 1 1 7 7 7 5 WD domain, G-beta repeat Peptidase_C14 PF00656.22 EME69467.1 - 4.6e-15 56.3 0.0 1.2e-14 54.9 0.0 1.6 1 1 0 1 1 1 1 Caspase domain ANAPC4_WD40 PF12894.7 EME69467.1 - 2.5e-11 43.7 0.8 0.034 14.4 0.0 5.2 3 1 2 5 5 5 4 Anaphase-promoting complex subunit 4 WD40 domain PQQ_3 PF13570.6 EME69467.1 - 6.4e-07 29.7 13.3 0.012 16.1 2.3 5.0 4 0 0 4 4 4 2 PQQ-like domain PQQ_2 PF13360.6 EME69467.1 - 1.7e-05 24.5 6.2 1.7e-05 24.5 6.2 2.6 1 1 1 2 2 2 2 PQQ-like domain Big_7 PF17957.1 EME69467.1 - 0.00031 21.4 0.4 0.0035 18.1 0.0 3.0 3 1 1 4 4 3 1 Bacterial Ig domain CHAT PF12770.7 EME69467.1 - 0.00032 20.2 0.1 0.0006 19.3 0.1 1.4 1 0 0 1 1 1 1 CHAT domain Nup160 PF11715.8 EME69467.1 - 0.0017 17.1 1.4 0.83 8.2 0.0 3.6 3 1 1 4 4 4 1 Nucleoporin Nup120/160 Cytochrom_D1 PF02239.16 EME69467.1 - 0.0028 16.2 0.8 0.055 12.0 0.1 2.3 2 0 0 2 2 2 1 Cytochrome D1 heme domain EF-hand_5 PF13202.6 EME69467.1 - 0.053 13.0 0.0 0.15 11.6 0.0 1.8 1 0 0 1 1 1 0 EF hand WD40_3 PF15911.5 EME69467.1 - 0.079 13.0 0.0 10 6.2 0.0 2.8 3 0 0 3 3 2 0 WD domain, G-beta repeat Phage_Mu_Gp45 PF06890.12 EME69467.1 - 0.11 12.3 0.0 5.2 6.9 0.0 3.4 3 1 1 4 4 4 0 Bacteriophage Mu Gp45 protein SGL PF08450.12 EME69467.1 - 0.14 11.7 0.5 2 7.9 0.0 2.8 2 1 2 4 4 4 0 SMP-30/Gluconolactonase/LRE-like region Autotransporter PF03797.19 EME69468.1 - 4.4e-23 82.2 12.3 4.4e-23 82.2 12.3 1.4 2 0 0 2 2 2 1 Autotransporter beta-domain GAF_2 PF13185.6 EME69469.1 - 2.5e-09 37.6 0.6 7e-09 36.1 0.6 1.8 1 0 0 1 1 1 1 GAF domain GAF PF01590.26 EME69469.1 - 0.001 19.7 0.1 0.0025 18.4 0.1 1.7 1 0 0 1 1 1 1 GAF domain 4HB_MCP_1 PF12729.7 EME69470.1 - 5.9e-13 48.8 0.1 5.9e-13 48.8 0.1 1.5 2 0 0 2 2 2 1 Four helix bundle sensory module for signal transduction HAMP PF00672.25 EME69470.1 - 3.2e-07 30.6 0.3 1.2e-06 28.7 0.1 2.2 2 0 0 2 2 2 1 HAMP domain TarH PF02203.15 EME69470.1 - 3.7e-05 23.7 3.8 3.7e-05 23.7 3.8 2.2 2 1 0 2 2 2 1 Tar ligand binding domain homologue CHASE3 PF05227.13 EME69470.1 - 0.054 13.4 9.1 0.096 12.6 9.1 1.4 1 0 0 1 1 1 0 CHASE3 domain NBD_C PF17042.5 EME69470.1 - 0.23 12.0 4.9 0.38 11.3 4.9 1.4 1 0 0 1 1 1 0 Nucleotide-binding C-terminal domain TPR_19 PF14559.6 EME69471.1 - 2e-13 50.7 23.6 2.8e-07 30.9 3.7 4.4 3 1 2 5 5 4 4 Tetratricopeptide repeat TPR_8 PF13181.6 EME69471.1 - 2.9e-11 42.6 6.0 0.014 15.5 0.0 4.8 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_14 PF13428.6 EME69471.1 - 1.3e-10 41.1 32.0 4.8e-07 30.1 2.5 6.7 2 2 5 7 7 7 3 Tetratricopeptide repeat TPR_2 PF07719.17 EME69471.1 - 4.7e-10 38.8 12.9 0.00097 19.1 0.3 5.2 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_12 PF13424.6 EME69471.1 - 7.5e-10 39.0 18.5 0.015 15.5 0.1 4.4 3 2 1 4 4 4 3 Tetratricopeptide repeat TPR_1 PF00515.28 EME69471.1 - 6.4e-07 28.9 6.2 0.0079 16.0 0.1 3.8 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_7 PF13176.6 EME69471.1 - 1.9e-06 27.5 8.3 0.055 13.5 0.0 4.7 4 2 1 5 5 5 2 Tetratricopeptide repeat TPR_16 PF13432.6 EME69471.1 - 8.9e-06 26.3 31.2 0.038 14.6 6.3 4.9 2 1 2 5 5 5 3 Tetratricopeptide repeat TPR_4 PF07721.14 EME69471.1 - 1.3e-05 25.3 31.1 0.021 15.4 4.7 6.2 5 1 0 5 5 5 2 Tetratricopeptide repeat TPR_6 PF13174.6 EME69471.1 - 0.00013 22.3 20.2 0.016 15.8 0.2 6.4 7 0 0 7 7 7 1 Tetratricopeptide repeat VirC2 PF07181.11 EME69471.1 - 0.00066 19.2 0.1 0.001 18.6 0.1 1.2 1 0 0 1 1 1 1 VirC2 protein ANAPC3 PF12895.7 EME69471.1 - 0.0011 19.1 4.2 0.2 11.9 0.6 3.2 2 1 1 3 3 3 1 Anaphase-promoting complex, cyclosome, subunit 3 Fis1_TPR_C PF14853.6 EME69471.1 - 0.015 15.4 1.2 0.044 13.9 0.2 2.2 3 0 0 3 3 2 0 Fis1 C-terminal tetratricopeptide repeat NARP1 PF12569.8 EME69471.1 - 0.016 14.2 3.9 0.88 8.4 1.4 2.3 1 1 1 2 2 2 0 NMDA receptor-regulated protein 1 TPR_11 PF13414.6 EME69471.1 - 0.016 14.9 5.9 13 5.6 0.0 4.9 5 1 1 6 6 6 0 TPR repeat TPR_17 PF13431.6 EME69471.1 - 0.023 15.0 6.2 15 6.3 0.1 4.9 6 0 0 6 6 5 0 Tetratricopeptide repeat TPR_9 PF13371.6 EME69471.1 - 0.03 14.5 21.4 0.25 11.5 6.8 3.9 1 1 2 3 3 3 0 Tetratricopeptide repeat DUF2732 PF10809.8 EME69471.1 - 0.038 13.9 4.1 0.19 11.6 2.5 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF2732) RPN7 PF10602.9 EME69471.1 - 0.05 13.3 0.3 0.35 10.5 0.1 2.0 2 0 0 2 2 2 0 26S proteasome subunit RPN7 TPR_10 PF13374.6 EME69471.1 - 0.13 12.2 0.2 1.3 9.0 0.0 5.7 7 0 0 7 7 7 0 Tetratricopeptide repeat Alkyl_sulf_dimr PF14863.6 EME69471.1 - 0.14 12.6 4.8 3.1 8.3 0.3 2.6 1 1 2 3 3 3 0 Alkyl sulfatase dimerisation ANAPC5 PF12862.7 EME69471.1 - 0.26 11.4 1.4 1.5 9.0 1.4 2.3 1 1 0 1 1 1 0 Anaphase-promoting complex subunit 5 TPR_21 PF09976.9 EME69471.1 - 0.26 11.0 16.3 2.8 7.6 2.1 2.7 1 1 1 2 2 2 0 Tetratricopeptide repeat-like domain Aldedh PF00171.22 EME69472.1 - 1.6e-160 534.6 0.0 1.8e-160 534.5 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family OmdA PF13376.6 EME69472.1 - 0.13 12.3 0.7 0.29 11.2 0.7 1.5 1 0 0 1 1 1 0 Bacteriocin-protection, YdeI or OmpD-Associated LuxC PF05893.14 EME69472.1 - 0.18 10.8 0.0 0.26 10.3 0.0 1.2 1 0 0 1 1 1 0 Acyl-CoA reductase (LuxC) DUF779 PF05610.11 EME69473.1 - 3.9e-42 142.4 0.0 4.5e-42 142.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF779) TonB_dep_Rec PF00593.24 EME69474.1 - 2.2e-43 149.8 12.3 2.8e-43 149.5 12.3 1.1 1 0 0 1 1 1 1 TonB dependent receptor Plug PF07715.15 EME69474.1 - 6.9e-12 45.9 0.2 1.5e-11 44.8 0.2 1.6 1 0 0 1 1 1 1 TonB-dependent Receptor Plug Domain SHOCT PF09851.9 EME69475.1 - 3.9e-07 29.6 1.7 7.9e-07 28.6 1.7 1.6 1 0 0 1 1 1 1 Short C-terminal domain DMAP_binding PF06464.11 EME69475.1 - 8.4e-05 23.3 0.0 8.4e-05 23.3 0.0 2.3 3 0 0 3 3 3 1 DMAP1-binding Domain GET2 PF08690.10 EME69475.1 - 0.0027 17.4 1.5 0.0033 17.2 1.5 1.1 1 0 0 1 1 1 1 GET complex subunit GET2 YlqD PF11068.8 EME69475.1 - 0.018 15.5 2.9 0.03 14.7 2.9 1.4 1 0 0 1 1 1 0 YlqD protein SUIM_assoc PF16619.5 EME69475.1 - 0.035 14.2 3.6 0.073 13.2 3.6 1.5 1 0 0 1 1 1 0 Unstructured region C-term to UIM in Ataxin3 Spt20 PF12090.8 EME69475.1 - 0.76 9.3 4.7 0.98 9.0 4.7 1.1 1 0 0 1 1 1 0 Spt20 family Lipase_chap PF03280.14 EME69475.1 - 0.78 9.7 13.3 1.3 9.0 13.3 1.3 1 0 0 1 1 1 0 Proteobacterial lipase chaperone protein DUF3138 PF11336.8 EME69475.1 - 0.89 8.1 2.6 1.2 7.7 2.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3138) SlyX PF04102.12 EME69475.1 - 6.9 7.4 13.9 20 5.9 13.9 1.8 1 0 0 1 1 1 0 SlyX Response_reg PF00072.24 EME69477.1 - 5.4e-24 84.5 0.0 8.9e-24 83.8 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain GerE PF00196.19 EME69477.1 - 1.5e-21 75.7 1.5 2.4e-21 75.0 1.5 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 EME69477.1 - 1.9e-06 27.4 0.5 4.1e-06 26.4 0.5 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 EME69477.1 - 1.7e-05 24.2 0.5 5.3e-05 22.6 0.2 2.0 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_40 PF14493.6 EME69477.1 - 0.0028 18.1 0.1 0.011 16.2 0.2 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_20 PF12840.7 EME69477.1 - 0.0032 17.5 0.5 0.012 15.7 0.1 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.6 EME69477.1 - 0.004 16.9 0.2 0.013 15.3 0.1 1.9 1 1 1 2 2 2 1 Homeodomain-like domain HTH_7 PF02796.15 EME69477.1 - 0.005 16.9 0.1 0.013 15.5 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_38 PF13936.6 EME69477.1 - 0.0084 15.8 0.6 0.039 13.7 0.0 2.4 3 0 0 3 3 3 1 Helix-turn-helix domain DUF2089 PF09862.9 EME69477.1 - 0.025 14.6 0.0 0.036 14.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2089) HTH_10 PF04967.12 EME69477.1 - 0.033 14.0 1.4 0.25 11.2 0.1 2.4 2 0 0 2 2 2 0 HTH DNA binding domain HTH_11 PF08279.12 EME69477.1 - 0.066 13.2 0.6 0.13 12.3 0.6 1.4 1 0 0 1 1 1 0 HTH domain CENP-B_N PF04218.13 EME69477.1 - 0.089 12.4 0.2 0.14 11.8 0.2 1.3 1 0 0 1 1 1 0 CENP-B N-terminal DNA-binding domain HTH_29 PF13551.6 EME69477.1 - 0.15 12.1 0.0 0.39 10.8 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn helix PQQ PF01011.21 EME69478.1 - 1.2e-42 141.8 14.6 1.2e-08 34.5 0.0 8.3 8 0 0 8 8 8 7 PQQ enzyme repeat PQQ_2 PF13360.6 EME69478.1 - 1.3e-31 110.0 6.5 6.6e-19 68.4 0.1 3.2 3 0 0 3 3 3 3 PQQ-like domain PQQ_3 PF13570.6 EME69478.1 - 3.1e-21 75.2 28.1 3.7e-07 30.4 0.1 9.1 8 2 0 8 8 8 5 PQQ-like domain Kelch_6 PF13964.6 EME69478.1 - 0.027 14.8 0.1 4.4 7.8 0.0 4.1 4 0 0 4 4 4 0 Kelch motif DUF1859 PF08948.10 EME69478.1 - 0.048 13.6 0.0 0.11 12.4 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1859) SUKH-4 PF14435.6 EME69478.1 - 0.099 12.7 0.0 4.1 7.4 0.0 2.9 3 0 0 3 3 3 0 SUKH-4 immunity protein TENA_THI-4 PF03070.16 EME69479.1 - 1.9e-52 178.1 0.0 2.1e-52 178.0 0.0 1.0 1 0 0 1 1 1 1 TENA/THI-4/PQQC family DUF1967 PF09269.11 EME69479.1 - 0.15 12.0 0.0 2 8.4 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1967) Lactamase_B_2 PF12706.7 EME69480.1 - 1.1e-46 158.9 0.1 1.3e-46 158.6 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 EME69480.1 - 0.0019 18.3 0.1 0.0031 17.5 0.1 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily DUF3168 PF11367.8 EME69480.1 - 0.096 12.9 0.7 0.25 11.5 0.7 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3168) Lactamase_B PF00753.27 EME69481.1 - 1e-23 84.4 2.3 1.6e-23 83.7 2.3 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 EME69481.1 - 0.0041 16.7 1.1 0.009 15.5 1.1 1.8 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Peptidase_S9 PF00326.21 EME69481.1 - 0.11 12.0 0.0 11 5.5 0.0 2.3 2 0 0 2 2 2 0 Prolyl oligopeptidase family SoxY PF13501.6 EME69482.1 - 2.4e-24 85.7 0.0 3.4e-24 85.2 0.0 1.2 1 0 0 1 1 1 1 Sulfur oxidation protein SoxY SoxZ PF08770.11 EME69482.1 - 4.6e-10 39.1 0.0 1e-09 38.1 0.0 1.5 1 0 0 1 1 1 1 Sulphur oxidation protein SoxZ SBP_bac_3 PF00497.20 EME69483.1 - 1.2e-21 77.2 0.0 3.2e-11 43.1 0.0 2.0 2 0 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 3 Cytochrome_CBB3 PF13442.6 EME69484.1 - 3.4e-14 52.9 0.0 6.1e-14 52.1 0.0 1.4 1 0 0 1 1 1 1 Cytochrome C oxidase, cbb3-type, subunit III Cytochrom_C PF00034.21 EME69484.1 - 1.3e-05 26.2 0.1 7.9e-05 23.7 0.1 2.0 1 1 0 1 1 1 1 Cytochrome c ANF_receptor PF01094.28 EME69485.1 - 0.00024 20.3 0.0 0.00034 19.8 0.0 1.2 1 0 0 1 1 1 1 Receptor family ligand binding region Lactonase PF10282.9 EME69486.1 - 4.1e-18 65.8 0.1 8.1e-08 31.9 0.0 3.3 1 1 3 4 4 4 4 Lactonase, 7-bladed beta-propeller Cytochrom_D1 PF02239.16 EME69486.1 - 6.4e-18 64.4 1.9 1e-06 27.5 0.1 3.7 1 1 3 4 4 4 3 Cytochrome D1 heme domain SGL PF08450.12 EME69486.1 - 9.3e-05 22.1 0.0 0.55 9.8 0.0 3.0 1 1 2 3 3 3 3 SMP-30/Gluconolactonase/LRE-like region NHL PF01436.21 EME69486.1 - 0.0021 18.0 3.0 9.2 6.5 0.0 5.4 5 1 1 6 6 6 1 NHL repeat DUF1513 PF07433.11 EME69486.1 - 0.0081 15.3 0.2 2.8 6.9 0.0 3.6 2 1 0 3 3 3 1 Protein of unknown function (DUF1513) Arylesterase PF01731.20 EME69486.1 - 0.014 15.5 0.0 1.7 8.9 0.0 3.4 3 0 0 3 3 3 0 Arylesterase Me-amine-dh_H PF06433.11 EME69486.1 - 0.02 13.7 0.6 0.99 8.2 0.1 3.2 2 1 0 3 3 3 0 Methylamine dehydrogenase heavy chain (MADH) PQQ_3 PF13570.6 EME69486.1 - 0.029 14.9 3.2 15 6.2 0.0 4.8 5 1 0 5 5 5 0 PQQ-like domain FlaG PF03646.15 EME69486.1 - 1.9 8.7 6.6 15 5.9 0.2 3.5 4 0 0 4 4 4 0 FlaG protein ABC_tran PF00005.27 EME69487.1 - 3.1e-15 56.9 0.0 3.6e-15 56.7 0.0 1.0 1 0 0 1 1 1 1 ABC transporter AAA_29 PF13555.6 EME69487.1 - 2.4e-05 24.0 0.1 3.8e-05 23.3 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 EME69487.1 - 0.00044 20.0 0.0 0.00051 19.8 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 EME69487.1 - 0.00044 20.7 0.0 0.00048 20.6 0.0 1.1 1 0 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 EME69487.1 - 0.00054 19.9 0.0 0.00067 19.6 0.0 1.1 1 0 0 1 1 1 1 RsgA GTPase AAA_23 PF13476.6 EME69487.1 - 0.00068 20.2 0.2 0.00084 19.9 0.2 1.1 1 0 0 1 1 1 1 AAA domain AAA_27 PF13514.6 EME69487.1 - 0.00073 19.2 0.0 0.0012 18.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_21 PF13304.6 EME69487.1 - 0.0008 19.3 0.1 0.00082 19.3 0.1 1.1 1 0 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 EME69487.1 - 0.017 14.6 0.0 0.022 14.2 0.0 1.1 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 EME69487.1 - 0.021 15.1 0.1 0.023 15.0 0.1 1.2 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 EME69487.1 - 0.037 13.6 0.2 0.044 13.4 0.2 1.1 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 EME69487.1 - 0.058 13.1 0.0 0.066 12.9 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain Mg_chelatase PF01078.21 EME69487.1 - 0.14 11.6 0.3 1.7 8.0 0.1 2.0 1 1 1 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 EME69487.1 - 0.14 12.2 0.1 0.2 11.6 0.1 1.2 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_13 PF13166.6 EME69487.1 - 0.17 10.5 0.0 0.17 10.5 0.0 1.0 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 EME69487.1 - 0.2 11.7 0.1 0.24 11.5 0.1 1.2 1 0 0 1 1 1 0 50S ribosome-binding GTPase cobW PF02492.19 EME69487.1 - 0.23 11.0 0.3 0.28 10.7 0.3 1.1 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain ABC2_membrane PF01061.24 EME69489.1 - 1.7e-31 109.3 19.3 1.7e-31 109.3 19.3 1.4 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 EME69489.1 - 3e-18 66.0 16.8 3e-18 66.0 16.8 1.4 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 EME69489.1 - 7.4e-11 41.8 16.6 7.4e-11 41.8 16.6 1.5 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 EME69489.1 - 0.018 14.6 4.0 0.037 13.6 4.0 1.6 1 1 0 1 1 1 0 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 EME69489.1 - 0.056 13.4 6.7 0.12 12.3 6.7 1.6 1 1 0 1 1 1 0 ABC-2 family transporter protein ABC_tran PF00005.27 EME69490.1 - 1.5e-21 77.4 0.0 4.1e-21 75.9 0.0 1.7 1 1 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 EME69490.1 - 2.9e-06 27.3 0.0 0.0045 16.9 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 EME69490.1 - 0.0003 21.2 0.9 0.00052 20.4 0.9 1.6 1 1 0 1 1 1 1 AAA ATPase domain Rad17 PF03215.15 EME69490.1 - 0.00082 19.3 0.0 0.0012 18.8 0.0 1.2 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_28 PF13521.6 EME69490.1 - 0.0011 19.2 0.0 0.002 18.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 EME69490.1 - 0.0011 18.6 0.0 0.0019 17.9 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 EME69490.1 - 0.0027 18.0 0.1 0.0038 17.5 0.0 1.5 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 EME69490.1 - 0.0065 16.4 0.0 0.01 15.8 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_25 PF13481.6 EME69490.1 - 0.007 16.0 0.3 0.084 12.4 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 EME69490.1 - 0.007 16.9 0.0 0.0099 16.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain SbcCD_C PF13558.6 EME69490.1 - 0.011 15.9 0.0 0.041 14.1 0.0 1.8 2 0 0 2 2 2 0 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.6 EME69490.1 - 0.021 15.0 0.3 0.47 10.6 0.1 2.4 3 0 0 3 3 3 0 AAA domain NACHT PF05729.12 EME69490.1 - 0.039 13.9 0.0 0.062 13.2 0.0 1.3 1 0 0 1 1 1 0 NACHT domain Cytidylate_kin PF02224.18 EME69490.1 - 0.079 12.7 0.0 0.12 12.1 0.0 1.2 1 0 0 1 1 1 0 Cytidylate kinase ATPase_2 PF01637.18 EME69490.1 - 0.094 12.6 0.0 0.13 12.2 0.0 1.1 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_14 PF13173.6 EME69490.1 - 0.1 12.6 0.0 0.16 12.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 EME69490.1 - 0.11 13.0 0.0 0.14 12.7 0.0 1.1 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 EME69490.1 - 0.13 12.4 0.0 0.22 11.6 0.0 1.4 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_30 PF13604.6 EME69490.1 - 0.13 11.9 0.0 0.22 11.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain PRK PF00485.18 EME69490.1 - 0.14 11.9 0.1 0.19 11.4 0.1 1.2 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA PF00004.29 EME69490.1 - 0.14 12.5 0.0 0.28 11.6 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.22 EME69490.1 - 0.16 12.4 0.0 0.24 11.8 0.0 1.2 1 0 0 1 1 1 0 RNA helicase NTPase_1 PF03266.15 EME69490.1 - 0.18 11.7 0.0 0.33 10.8 0.0 1.4 1 0 0 1 1 1 0 NTPase BPD_transp_1 PF00528.22 EME69491.1 - 9.7e-19 67.8 11.4 9.7e-19 67.8 11.4 2.0 1 1 1 2 2 2 2 Binding-protein-dependent transport system inner membrane component NMT1 PF09084.11 EME69492.1 - 3.9e-05 23.7 0.0 5.9e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 NMT1/THI5 like SBP_bac_3 PF00497.20 EME69492.1 - 0.00017 21.1 0.0 0.0003 20.3 0.0 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 NMT1_2 PF13379.6 EME69492.1 - 0.0094 15.7 0.1 0.34 10.5 0.0 2.1 2 0 0 2 2 2 2 NMT1-like family Rhodanese PF00581.20 EME69493.1 - 0.0016 19.0 0.0 0.0021 18.6 0.0 1.2 1 0 0 1 1 1 1 Rhodanese-like domain LPD24 PF18839.1 EME69493.1 - 0.19 12.0 0.0 0.34 11.2 0.0 1.3 1 0 0 1 1 1 0 Large polyvalent protein associated domain 24 sCache_2 PF17200.4 EME69494.1 - 5.3e-15 55.6 0.0 6.9e-15 55.2 0.0 1.2 1 0 0 1 1 1 1 Single Cache domain 2 dCache_2 PF08269.11 EME69494.1 - 1.4e-12 47.4 0.0 1.9e-12 47.0 0.0 1.1 1 0 0 1 1 1 1 Cache domain Cytochrom_C PF00034.21 EME69494.1 - 2.7e-06 28.4 0.0 2.1e-05 25.6 0.0 2.2 2 0 0 2 2 2 1 Cytochrome c Ish1 PF10281.9 EME69494.1 - 0.062 13.6 0.0 1.8 8.9 0.0 2.5 2 0 0 2 2 2 0 Putative stress-responsive nuclear envelope protein Cytochrome_CBB3 PF13442.6 EME69494.1 - 0.076 13.3 2.2 0.18 12.2 0.7 2.3 2 1 0 2 2 2 0 Cytochrome C oxidase, cbb3-type, subunit III SIP PF04954.13 EME69494.1 - 0.14 12.7 0.3 0.6 10.6 0.1 2.1 2 1 0 2 2 2 0 Siderophore-interacting protein Peptidase_M48 PF01435.18 EME69495.1 - 7e-22 78.2 0.0 9.8e-22 77.7 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 EME69495.1 - 0.088 12.0 0.0 0.15 11.2 0.0 1.3 1 0 0 1 1 1 0 BlaR1 peptidase M56 SprT-like PF10263.9 EME69495.1 - 0.11 12.4 0.0 0.21 11.4 0.0 1.4 1 0 0 1 1 1 0 SprT-like family PqqD PF05402.12 EME69496.1 - 5.1e-10 39.5 0.0 8.2e-10 38.9 0.0 1.3 1 0 0 1 1 1 1 Coenzyme PQQ synthesis protein D (PqqD) Radical_SAM PF04055.21 EME69497.1 - 3.4e-20 73.1 0.0 5.7e-20 72.4 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.6 EME69497.1 - 2.7e-07 31.0 1.5 6.9e-07 29.7 0.1 2.3 3 0 0 3 3 3 1 Iron-sulfur cluster-binding domain Fer4_14 PF13394.6 EME69497.1 - 2e-05 24.7 0.1 4.8e-05 23.5 0.0 1.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 EME69497.1 - 5.5e-05 23.4 0.0 9.1e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain PqqA PF08042.11 EME69498.1 - 4.8e-10 39.1 0.2 5.5e-10 38.9 0.2 1.1 1 0 0 1 1 1 1 PqqA family Urate_ox_N PF06181.11 EME69499.1 - 1.2e-10 41.2 5.8 3.9e-07 29.7 0.0 3.0 2 1 1 3 3 3 3 Urate oxidase N-terminal FIST PF08495.10 EME69500.1 - 1e-32 113.5 0.5 9.8e-32 110.3 0.1 2.1 2 0 0 2 2 2 1 FIST N domain FIST_C PF10442.9 EME69500.1 - 4e-16 59.2 1.0 2.2e-12 47.1 0.1 2.5 3 0 0 3 3 3 2 FIST C domain PAS_7 PF12860.7 EME69501.1 - 2.7e-64 214.5 0.0 1.8e-36 124.8 0.0 2.7 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.26 EME69501.1 - 8.1e-18 65.0 0.0 2.5e-17 63.4 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 EME69501.1 - 2e-08 34.1 0.2 2e-08 34.1 0.2 2.8 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain Response_reg PF00072.24 EME69501.1 - 2.8e-08 33.9 0.0 9.1e-08 32.3 0.0 1.9 2 0 0 2 2 2 1 Response regulator receiver domain PAS_8 PF13188.7 EME69501.1 - 8.1e-07 28.9 0.1 0.064 13.3 0.0 3.1 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.10 EME69501.1 - 4.1e-06 27.0 1.6 0.022 15.0 0.1 3.6 3 1 0 3 3 3 2 PAS fold DASH_Duo1 PF08651.10 EME69501.1 - 0.043 13.6 0.3 5.3 6.9 0.0 2.6 2 0 0 2 2 2 0 DASH complex subunit Duo1 Syntaxin-6_N PF09177.11 EME69501.1 - 0.43 11.1 7.1 17 6.0 0.1 3.5 3 1 0 3 3 3 0 Syntaxin 6, N-terminal Jnk-SapK_ap_N PF09744.9 EME69501.1 - 0.58 10.4 11.7 0.083 13.1 0.6 3.0 3 0 0 3 3 3 0 JNK_SAPK-associated protein-1 UPF0449 PF15136.6 EME69501.1 - 1.1 9.8 5.8 17 6.0 0.1 3.4 3 1 0 3 3 3 0 Uncharacterised protein family UPF0449 DUF2205 PF10224.9 EME69501.1 - 1.1 9.3 9.8 1.4 8.9 0.2 3.5 3 0 0 3 3 3 0 Short coiled-coil protein GerE PF00196.19 EME69502.1 - 2.3e-20 71.9 0.7 4.4e-20 71.0 0.7 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Response_reg PF00072.24 EME69502.1 - 3.2e-14 53.0 0.1 6e-14 52.2 0.0 1.5 2 0 0 2 2 2 1 Response regulator receiver domain Sigma70_r4_2 PF08281.12 EME69502.1 - 5.4e-07 29.2 0.2 1e-06 28.3 0.2 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 EME69502.1 - 0.0011 18.4 0.1 0.0026 17.3 0.1 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_20 PF12840.7 EME69502.1 - 0.0046 17.0 1.5 2.2 8.4 0.2 2.5 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_38 PF13936.6 EME69502.1 - 0.022 14.5 0.0 0.072 12.9 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain Trans_reg_C PF00486.28 EME69502.1 - 0.037 14.1 2.0 0.17 12.0 2.0 2.0 1 1 0 1 1 1 0 Transcriptional regulatory protein, C terminal HTH_10 PF04967.12 EME69502.1 - 0.049 13.4 0.2 0.13 12.1 0.0 1.8 2 0 0 2 2 2 0 HTH DNA binding domain DUF2089 PF09862.9 EME69502.1 - 0.16 12.0 0.1 0.27 11.3 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2089) TonB_C PF03544.14 EME69503.1 - 5.1e-12 46.1 0.0 1.7e-11 44.4 0.0 1.9 2 0 0 2 2 2 1 Gram-negative bacterial TonB protein C-terminal TonB_2 PF13103.6 EME69503.1 - 0.0017 18.5 0.0 0.004 17.4 0.0 1.6 1 0 0 1 1 1 1 TonB C terminal TolA PF06519.11 EME69503.1 - 0.03 14.5 0.0 0.054 13.7 0.0 1.4 1 0 0 1 1 1 0 TolA C-terminal sCache_3_3 PF17202.4 EME69504.1 - 2.8e-33 114.5 0.6 2.8e-33 114.5 0.6 2.5 2 0 0 2 2 2 1 Single cache domain 3 Cache_3-Cache_2 PF17201.4 EME69504.1 - 2.4e-30 105.8 0.8 2.4e-30 105.8 0.8 2.8 3 0 0 3 3 3 1 Cache 3/Cache 2 fusion domain MCPsignal PF00015.21 EME69504.1 - 3.3e-29 101.9 24.2 3.3e-29 101.9 24.2 3.1 2 1 1 3 3 3 1 Methyl-accepting chemotaxis protein (MCP) signalling domain sCache_3_2 PF17203.4 EME69504.1 - 9.6e-13 48.5 0.1 9.6e-13 48.5 0.1 3.4 2 1 0 2 2 2 1 Single cache domain 3 HAMP PF00672.25 EME69504.1 - 6.7e-08 32.8 0.9 6.7e-08 32.8 0.9 3.3 4 0 0 4 4 4 1 HAMP domain PilZ PF07238.14 EME69504.1 - 1.3e-07 31.9 0.1 3.1e-07 30.6 0.1 1.6 1 0 0 1 1 1 1 PilZ domain DUF948 PF06103.11 EME69504.1 - 0.023 15.0 20.2 2.7 8.3 2.5 5.0 2 1 1 3 3 3 0 Bacterial protein of unknown function (DUF948) DUF1664 PF07889.12 EME69504.1 - 0.082 12.9 8.3 3.4 7.7 1.5 3.4 2 1 0 2 2 2 0 Protein of unknown function (DUF1664) Mrr_cat PF04471.12 EME69504.1 - 9.3 6.3 10.5 1 9.4 2.6 3.0 2 2 0 2 2 2 0 Restriction endonuclease Glyco_tranf_2_3 PF13641.6 EME69505.1 - 1.6e-32 113.2 0.0 2.6e-32 112.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.26 EME69505.1 - 2.2e-26 92.7 0.0 4.3e-26 91.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.6 EME69505.1 - 1.1e-23 84.2 2.3 1.1e-23 84.2 2.3 2.3 2 0 0 2 2 2 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 EME69505.1 - 5.3e-10 39.0 0.0 1.1e-09 38.0 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_hydro_17 PF00332.18 EME69505.1 - 1.7e-07 31.1 0.1 2.7e-07 30.5 0.1 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 17 Cellulose_synt PF03552.14 EME69505.1 - 0.011 14.3 0.8 0.029 12.9 0.1 1.9 2 0 0 2 2 2 0 Cellulose synthase Chitin_synth_2 PF03142.15 EME69505.1 - 0.025 13.2 0.0 4.4 5.8 0.0 2.2 2 0 0 2 2 2 0 Chitin synthase RelB PF04221.12 EME69505.1 - 0.082 12.9 0.0 0.19 11.7 0.0 1.6 1 0 0 1 1 1 0 RelB antitoxin Lyase_1 PF00206.20 EME69506.1 - 5.9e-54 183.6 0.0 8.8e-54 183.0 0.0 1.2 1 0 0 1 1 1 1 Lyase ADSL_C PF10397.9 EME69506.1 - 6.5e-28 97.1 0.1 1.8e-27 95.7 0.1 1.8 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminus ASL_C PF08328.11 EME69506.1 - 0.0059 16.7 0.0 0.015 15.3 0.0 1.7 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminal HTH_27 PF13463.6 EME69507.1 - 4.4e-15 55.9 0.1 9.7e-15 54.8 0.0 1.6 2 0 0 2 2 2 1 Winged helix DNA-binding domain MarR_2 PF12802.7 EME69507.1 - 1.9e-06 27.7 0.0 3e-06 27.0 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.6 EME69507.1 - 0.00062 19.9 0.1 0.0012 19.0 0.0 1.4 2 0 0 2 2 2 1 Winged helix DNA-binding domain MarR PF01047.22 EME69507.1 - 0.0009 19.1 0.0 0.0018 18.1 0.0 1.6 1 0 0 1 1 1 1 MarR family AAA_31 PF13614.6 EME69508.1 - 6.7e-43 146.6 0.0 8.7e-43 146.3 0.0 1.1 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 EME69508.1 - 6.9e-20 71.4 0.0 1.1e-19 70.7 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 EME69508.1 - 1.3e-13 51.0 0.7 1.6e-12 47.4 0.7 2.0 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase MipZ PF09140.11 EME69508.1 - 6e-13 48.7 0.6 2.3e-08 33.7 0.3 2.1 2 0 0 2 2 2 2 ATPase MipZ Fer4_NifH PF00142.18 EME69508.1 - 2.7e-08 33.6 0.0 2.8e-06 27.0 0.0 2.1 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CBP_BcsQ PF06564.12 EME69508.1 - 3.8e-08 33.1 0.2 5.6e-07 29.3 0.2 2.2 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ ArsA_ATPase PF02374.15 EME69508.1 - 1.3e-06 27.8 1.8 1.3e-06 27.8 0.2 1.8 3 0 0 3 3 3 1 Anion-transporting ATPase SRP54 PF00448.22 EME69508.1 - 0.018 14.7 0.9 0.033 13.8 0.1 1.8 3 0 0 3 3 3 0 SRP54-type protein, GTPase domain VirC1 PF07015.11 EME69508.1 - 0.031 13.6 0.1 0.087 12.1 0.1 1.6 2 0 0 2 2 2 0 VirC1 protein CLP1_P PF16575.5 EME69508.1 - 0.065 13.0 0.9 0.092 12.5 0.1 1.6 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_25 PF13481.6 EME69508.1 - 0.066 12.8 4.7 1.5 8.4 1.5 2.8 2 1 0 2 2 2 0 AAA domain Usp PF00582.26 EME69508.1 - 0.097 13.2 0.4 0.097 13.2 0.4 1.7 2 0 0 2 2 2 0 Universal stress protein family HATPase_c PF02518.26 EME69510.1 - 1.4e-25 90.0 0.0 2.3e-25 89.3 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 EME69510.1 - 8.1e-19 67.4 3.5 1.7e-18 66.4 0.1 2.7 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.10 EME69510.1 - 4e-15 56.0 0.1 3.1e-12 46.7 0.0 2.5 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 EME69510.1 - 2e-08 34.4 0.0 2.6e-07 30.8 0.0 2.2 2 0 0 2 2 2 1 PAS domain PAS PF00989.25 EME69510.1 - 0.0063 16.5 0.0 0.016 15.2 0.0 1.7 1 0 0 1 1 1 1 PAS fold HATPase_c_2 PF13581.6 EME69510.1 - 0.01 15.8 0.0 0.021 14.8 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain PAS_8 PF13188.7 EME69510.1 - 0.11 12.5 0.0 0.48 10.5 0.0 2.1 2 0 0 2 2 2 0 PAS domain NifU PF01106.17 EME69510.1 - 0.18 12.0 0.0 0.45 10.7 0.0 1.7 1 0 0 1 1 1 0 NifU-like domain Radical_SAM PF04055.21 EME69511.1 - 9.7e-28 97.6 0.0 2.5e-25 89.8 0.0 3.1 3 0 0 3 3 3 1 Radical SAM superfamily UPF0004 PF00919.20 EME69511.1 - 1e-19 70.4 0.0 2e-19 69.5 0.0 1.5 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM_2 PF18693.1 EME69511.1 - 7e-19 67.7 3.3 1.6e-18 66.6 3.3 1.6 1 0 0 1 1 1 1 TRAM domain TRAM PF01938.20 EME69511.1 - 0.0038 17.2 0.3 0.0071 16.3 0.3 1.5 1 0 0 1 1 1 1 TRAM domain CLP1_P PF16575.5 EME69511.1 - 0.092 12.5 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop RNase_II_C_S1 PF18614.1 EME69511.1 - 0.17 11.9 1.6 1.9 8.5 0.2 2.5 2 0 0 2 2 2 0 RNase II-type exonuclease C-terminal S1 domain ABC_tran PF00005.27 EME69513.1 - 5.5e-26 91.7 0.0 7.8e-26 91.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 EME69513.1 - 4.4e-11 43.1 0.0 3.3e-06 27.1 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 EME69513.1 - 0.0024 17.4 0.0 0.76 9.2 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 EME69513.1 - 0.011 15.4 0.0 0.019 14.7 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.6 EME69513.1 - 0.035 14.6 0.0 0.049 14.1 0.0 1.1 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 EME69513.1 - 0.17 11.3 0.1 0.37 10.1 0.0 1.6 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI SbcCD_C PF13558.6 EME69513.1 - 0.19 12.0 0.2 3.4 8.0 0.2 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit RsgA_GTPase PF03193.16 EME69513.1 - 0.2 11.6 0.0 3.3 7.6 0.0 2.2 2 0 0 2 2 2 0 RsgA GTPase PBP_like_2 PF12849.7 EME69514.1 - 1.5e-22 80.6 0.1 1.9e-22 80.3 0.1 1.1 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.6 EME69514.1 - 5.6e-09 36.1 0.7 9e-09 35.4 0.7 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein LysR_substrate PF03466.20 EME69514.1 - 0.0028 17.0 0.0 0.0046 16.4 0.0 1.3 1 0 0 1 1 1 1 LysR substrate binding domain PBP_like PF12727.7 EME69514.1 - 0.058 12.5 0.1 0.097 11.8 0.1 1.5 1 1 0 1 1 1 0 PBP superfamily domain PBP_like_2 PF12849.7 EME69515.1 - 2.2e-18 66.9 0.0 7.7e-18 65.2 0.0 1.7 1 1 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.6 EME69515.1 - 3.8e-12 46.5 1.5 6.5e-12 45.7 1.5 1.3 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.7 EME69515.1 - 3.6e-05 23.0 0.0 5.1e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 PBP superfamily domain LysR_substrate PF03466.20 EME69515.1 - 0.036 13.4 0.0 0.066 12.6 0.0 1.3 1 0 0 1 1 1 0 LysR substrate binding domain MMtag PF10159.9 EME69516.1 - 0.03 14.6 0.0 0.031 14.5 0.0 1.2 1 0 0 1 1 1 0 Multiple myeloma tumor-associated DUF1465 PF07323.12 EME69517.1 - 5.5e-31 107.5 2.4 6.4e-31 107.3 2.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1465) DUF4044 PF13253.6 EME69517.1 - 0.035 13.6 0.1 0.061 12.8 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4044) Guanylate_cyc PF00211.20 EME69518.1 - 1.8e-14 53.8 0.3 4e-14 52.6 0.1 1.6 2 0 0 2 2 2 1 Adenylate and Guanylate cyclase catalytic domain Ribosomal_L31 PF01197.18 EME69519.1 - 4.8e-26 90.8 0.1 5.8e-26 90.5 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L31 Frataxin_Cyay PF01491.16 EME69520.1 - 1.8e-25 89.1 0.0 1.9e-25 89.0 0.0 1.0 1 0 0 1 1 1 1 Frataxin-like domain Rbsn PF11464.8 EME69521.1 - 0.22 11.3 0.1 0.41 10.4 0.1 1.4 1 0 0 1 1 1 0 Rabenosyn Rab binding domain Biotin_lipoyl_2 PF13533.6 EME69522.1 - 2.7e-13 49.5 1.6 3e-08 33.3 0.2 3.1 2 1 0 2 2 2 2 Biotin-lipoyl like HlyD_3 PF13437.6 EME69522.1 - 1.9e-12 47.8 0.8 1.1e-07 32.5 0.1 2.5 2 0 0 2 2 2 2 HlyD family secretion protein HlyD_D23 PF16576.5 EME69522.1 - 1.5e-08 34.1 2.9 0.00025 20.3 0.3 2.6 2 1 0 2 2 2 2 Barrel-sandwich domain of CusB or HlyD membrane-fusion Biotin_lipoyl PF00364.22 EME69522.1 - 2.8e-08 33.5 1.5 0.0086 15.9 0.0 3.8 3 1 0 3 3 3 2 Biotin-requiring enzyme RnfC_N PF13375.6 EME69522.1 - 0.0081 16.1 0.6 0.22 11.5 0.0 3.0 3 0 0 3 3 3 1 RnfC Barrel sandwich hybrid domain PASTA PF03793.19 EME69522.1 - 0.38 10.6 3.4 12 5.8 0.1 4.1 5 0 0 5 5 5 0 PASTA domain Peptidase_C39 PF03412.15 EME69523.1 - 1.6e-37 128.3 0.0 2.7e-37 127.5 0.0 1.4 1 0 0 1 1 1 1 Peptidase C39 family ABC_tran PF00005.27 EME69523.1 - 8.8e-32 110.5 0.0 1.7e-31 109.5 0.0 1.5 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.23 EME69523.1 - 9.6e-22 77.9 15.2 1.2e-21 77.6 15.2 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region Peptidase_C70 PF12385.8 EME69523.1 - 1.4e-06 28.4 0.0 3.7e-06 27.0 0.0 1.7 1 0 0 1 1 1 1 Papain-like cysteine protease AvrRpt2 Peptidase_C39_2 PF13529.6 EME69523.1 - 0.00075 20.1 0.0 0.42 11.1 0.0 2.3 2 0 0 2 2 2 2 Peptidase_C39 like family SMC_N PF02463.19 EME69523.1 - 0.0015 18.0 0.0 0.048 13.1 0.0 1.7 1 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 EME69523.1 - 0.012 15.9 0.1 4.6 7.5 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_21 PF13304.6 EME69523.1 - 0.02 14.7 0.3 0.056 13.3 0.1 1.8 1 1 1 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 EME69523.1 - 0.13 12.1 0.7 0.32 10.8 0.7 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF4191 PF13829.6 EME69523.1 - 2.1 7.6 5.0 1.1 8.5 1.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4191) DUF805 PF05656.14 EME69523.1 - 6.2 7.3 6.3 1.2 9.6 1.6 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF805) ABC_tran PF00005.27 EME69524.1 - 1.7e-30 106.3 0.0 2.9e-30 105.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.23 EME69524.1 - 2.9e-19 69.8 17.5 4.1e-19 69.3 17.5 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region SMC_N PF02463.19 EME69524.1 - 6e-06 25.9 0.0 0.0039 16.6 0.0 2.3 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 EME69524.1 - 1.5e-05 25.3 0.0 2.9e-05 24.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 EME69524.1 - 0.00057 20.3 0.1 0.0015 18.9 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 EME69524.1 - 0.0038 17.1 0.0 0.0072 16.3 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_29 PF13555.6 EME69524.1 - 0.0081 15.9 0.0 0.019 14.7 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.6 EME69524.1 - 0.017 14.7 0.0 0.073 12.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.15 EME69524.1 - 0.021 14.7 0.0 0.037 13.9 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_21 PF13304.6 EME69524.1 - 0.026 14.3 0.0 0.051 13.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system AAA PF00004.29 EME69524.1 - 0.036 14.5 0.3 0.58 10.6 0.3 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.6 EME69524.1 - 0.088 13.1 0.2 0.65 10.3 0.2 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.6 EME69524.1 - 0.11 12.6 0.0 0.23 11.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 EME69524.1 - 0.12 12.4 0.0 0.25 11.4 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase NB-ARC PF00931.22 EME69524.1 - 0.16 11.2 0.0 0.27 10.4 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain RNA_helicase PF00910.22 EME69524.1 - 0.19 12.2 0.1 0.34 11.3 0.1 1.4 1 0 0 1 1 1 0 RNA helicase AAA_18 PF13238.6 EME69524.1 - 0.22 12.1 0.3 0.57 10.7 0.3 1.7 1 1 0 1 1 1 0 AAA domain cNMP_binding PF00027.29 EME69525.1 - 3.7e-16 59.0 0.0 5.3e-16 58.5 0.0 1.3 1 0 0 1 1 1 1 Cyclic nucleotide-binding domain AraC_binding_2 PF14525.6 EME69525.1 - 0.002 17.9 0.2 0.0036 17.0 0.2 1.6 1 1 0 1 1 1 1 AraC-binding-like domain Response_reg PF00072.24 EME69526.1 - 7.9e-51 170.9 1.3 2.2e-26 92.2 0.0 2.8 3 0 0 3 3 3 2 Response regulator receiver domain GGDEF PF00990.21 EME69526.1 - 9e-47 158.8 0.0 1.8e-46 157.8 0.0 1.5 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain HATPase_c PF02518.26 EME69526.1 - 1.8e-29 102.5 0.0 3.5e-29 101.6 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 EME69526.1 - 8.9e-17 60.9 0.1 3.7e-16 58.9 0.1 2.2 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS PF00989.25 EME69526.1 - 2.4e-11 43.6 0.0 5.3e-11 42.5 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.10 EME69526.1 - 3.7e-11 43.2 0.0 1.2e-10 41.6 0.0 1.9 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 EME69526.1 - 4.5e-11 42.9 0.0 1.1e-10 41.6 0.0 1.7 1 0 0 1 1 1 1 PAS domain Hpt PF01627.23 EME69526.1 - 3.1e-07 30.6 3.0 9.8e-07 29.0 3.0 1.8 1 0 0 1 1 1 1 Hpt domain PAS_8 PF13188.7 EME69526.1 - 0.002 18.1 0.0 0.0066 16.5 0.0 1.9 1 0 0 1 1 1 1 PAS domain EAL PF00563.20 EME69527.1 - 1.6e-63 214.4 0.0 2.2e-63 214.0 0.0 1.1 1 0 0 1 1 1 1 EAL domain Hemerythrin PF01814.23 EME69527.1 - 9.8e-12 45.6 0.1 1.5e-11 45.0 0.1 1.3 1 0 0 1 1 1 1 Hemerythrin HHE cation binding domain Halo_GVPC PF05465.13 EME69527.1 - 0.011 15.9 0.0 0.03 14.6 0.0 1.7 1 0 0 1 1 1 0 Halobacterial gas vesicle protein C (GVPC) repeat COX2 PF00116.20 EME69528.1 - 3.3e-08 33.4 0.6 1.4e-07 31.4 0.0 1.9 1 1 1 2 2 2 1 Cytochrome C oxidase subunit II, periplasmic domain Cupredoxin_1 PF13473.6 EME69528.1 - 0.06 13.5 0.0 0.093 12.9 0.0 1.4 1 0 0 1 1 1 0 Cupredoxin-like domain COX1 PF00115.20 EME69529.1 - 1.6e-46 159.1 61.1 2e-46 158.8 61.1 1.1 1 0 0 1 1 1 1 Cytochrome C and Quinol oxidase polypeptide I SpoIIIAC PF06686.11 EME69529.1 - 0.2 11.9 0.3 0.2 11.9 0.3 3.3 3 0 0 3 3 3 0 Stage III sporulation protein AC/AD protein family SCO1-SenC PF02630.14 EME69530.1 - 3.2e-11 43.3 0.0 6.5e-11 42.3 0.0 1.6 1 1 0 1 1 1 1 SCO1/SenC CPP1-like PF11833.8 EME69531.1 - 0.016 14.9 1.1 0.03 14.0 0.5 1.7 1 1 0 2 2 2 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like CbtB PF09489.10 EME69531.1 - 0.63 10.2 4.5 1 9.5 1.0 2.6 2 0 0 2 2 2 0 Probable cobalt transporter subunit (CbtB) TPR_11 PF13414.6 EME69532.1 - 1.1e-37 127.4 7.9 1.9e-08 33.9 0.0 7.3 2 2 5 7 7 7 6 TPR repeat TPR_2 PF07719.17 EME69532.1 - 7.2e-37 122.5 26.8 2.3e-07 30.4 0.5 8.6 8 0 0 8 8 8 8 Tetratricopeptide repeat TPR_1 PF00515.28 EME69532.1 - 2.5e-34 115.7 14.2 6.2e-06 25.8 0.1 8.4 8 0 0 8 8 8 7 Tetratricopeptide repeat TPR_8 PF13181.6 EME69532.1 - 1.2e-30 103.1 1.9 0.00045 20.2 0.0 8.3 8 0 0 8 8 8 6 Tetratricopeptide repeat TPR_16 PF13432.6 EME69532.1 - 3.3e-30 104.4 59.4 2.1e-08 34.7 3.0 7.6 5 1 4 9 9 7 6 Tetratricopeptide repeat TPR_12 PF13424.6 EME69532.1 - 7.8e-24 83.8 29.5 2.8e-08 33.9 0.4 5.9 2 1 4 6 6 6 6 Tetratricopeptide repeat TPR_17 PF13431.6 EME69532.1 - 5.1e-23 79.8 11.4 0.00026 21.2 0.1 7.9 7 1 0 7 7 7 5 Tetratricopeptide repeat TPR_19 PF14559.6 EME69532.1 - 1.4e-20 73.5 30.2 6.9e-06 26.5 0.6 6.5 4 2 3 7 7 6 6 Tetratricopeptide repeat TPR_14 PF13428.6 EME69532.1 - 4.6e-20 70.6 51.0 0.00014 22.4 1.7 10.6 5 2 6 11 11 9 6 Tetratricopeptide repeat Methyltransf_11 PF08241.12 EME69532.1 - 1.7e-16 60.6 0.1 4.3e-13 49.7 0.0 3.2 3 0 0 3 3 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 EME69532.1 - 3e-16 59.6 0.0 6.5e-16 58.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 EME69532.1 - 6.5e-15 55.6 0.0 2.9e-14 53.5 0.0 2.2 2 0 0 2 2 1 1 Methyltransferase domain TPR_10 PF13374.6 EME69532.1 - 7.5e-15 54.3 41.9 8.6e-07 28.6 0.3 8.6 8 0 0 8 8 8 6 Tetratricopeptide repeat TPR_7 PF13176.6 EME69532.1 - 2.2e-13 49.2 21.1 0.063 13.3 0.0 8.5 7 1 1 8 8 8 4 Tetratricopeptide repeat TPR_4 PF07721.14 EME69532.1 - 7.6e-12 44.7 70.3 0.026 15.1 2.8 11.0 11 0 0 11 11 9 6 Tetratricopeptide repeat TPR_9 PF13371.6 EME69532.1 - 1.3e-11 44.4 32.0 1.5e-05 25.1 2.8 5.5 3 2 1 4 4 4 3 Tetratricopeptide repeat Methyltransf_12 PF08242.12 EME69532.1 - 8.1e-11 42.5 0.0 3.1e-10 40.7 0.0 2.1 2 0 0 2 2 1 1 Methyltransferase domain TPR_6 PF13174.6 EME69532.1 - 2.3e-08 34.1 15.2 0.056 14.1 0.1 7.8 7 0 0 7 7 7 1 Tetratricopeptide repeat TPR_15 PF13429.6 EME69532.1 - 1.8e-07 30.6 10.0 0.13 11.5 0.0 3.8 2 1 2 4 4 4 3 Tetratricopeptide repeat ANAPC3 PF12895.7 EME69532.1 - 9.1e-07 29.0 4.8 0.002 18.3 0.3 4.1 1 1 3 4 4 4 1 Anaphase-promoting complex, cyclosome, subunit 3 Methyltransf_23 PF13489.6 EME69532.1 - 6.6e-06 26.0 0.0 3.3e-05 23.8 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain TPR_20 PF14561.6 EME69532.1 - 6.3e-05 23.2 10.5 0.044 14.1 0.8 4.9 2 2 1 3 3 3 1 Tetratricopeptide repeat Ubie_methyltran PF01209.18 EME69532.1 - 0.00018 21.0 0.0 0.00029 20.2 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family BTAD PF03704.17 EME69532.1 - 0.0003 21.3 23.8 0.12 12.8 3.9 4.5 1 1 3 5 5 5 3 Bacterial transcriptional activator domain CMAS PF02353.20 EME69532.1 - 0.0023 17.3 0.0 0.0044 16.4 0.0 1.4 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase DUF3856 PF12968.7 EME69532.1 - 0.0038 17.3 3.8 15 5.7 0.0 5.3 2 1 1 5 5 5 0 Domain of Unknown Function (DUF3856) MTS PF05175.14 EME69532.1 - 0.0042 16.6 0.0 0.008 15.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_4 PF02390.17 EME69532.1 - 0.0051 16.3 0.0 0.0083 15.6 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase HrpB1_HrpK PF09613.10 EME69532.1 - 0.007 16.0 3.2 0.0094 15.6 0.5 2.5 2 0 0 2 2 2 1 Bacterial type III secretion protein (HrpB1_HrpK) Methyltransf_9 PF08003.11 EME69532.1 - 0.046 12.6 0.0 0.071 12.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) SMG1 PF15785.5 EME69532.1 - 0.064 11.6 0.0 0.12 10.8 0.0 1.3 1 0 0 1 1 1 0 Serine/threonine-protein kinase smg-1 CheR PF01739.18 EME69532.1 - 0.098 12.1 0.0 16 5.0 0.0 2.5 1 1 1 2 2 2 0 CheR methyltransferase, SAM binding domain NARP1 PF12569.8 EME69532.1 - 0.1 11.5 0.7 11 4.8 0.1 2.5 3 0 0 3 3 3 0 NMDA receptor-regulated protein 1 TPR_5 PF12688.7 EME69532.1 - 0.12 12.6 13.5 0.21 11.8 1.5 4.4 2 2 2 4 4 4 0 Tetratrico peptide repeat Fis1_TPR_C PF14853.6 EME69532.1 - 0.62 10.2 14.1 7.7 6.7 0.1 5.3 6 0 0 6 6 5 0 Fis1 C-terminal tetratricopeptide repeat DUF4096 PF13340.6 EME69533.1 - 2.3e-21 75.8 1.9 7.4e-21 74.2 0.1 2.2 2 0 0 2 2 2 1 Putative transposase of IS4/5 family (DUF4096) AAA_11 PF13086.6 EME69534.1 - 2.1e-08 34.3 0.0 2.4e-08 34.1 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 EME69534.1 - 3.8e-08 33.3 0.6 7e-07 29.1 0.3 1.9 1 1 1 2 2 2 1 AAA domain AAA_19 PF13245.6 EME69534.1 - 7.4e-06 26.4 0.1 8.8e-06 26.1 0.1 1.1 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 EME69534.1 - 2.7e-05 24.0 0.0 3e-05 23.8 0.0 1.2 1 0 0 1 1 1 1 IstB-like ATP binding protein ResIII PF04851.15 EME69534.1 - 0.0016 18.5 0.0 0.0018 18.3 0.0 1.1 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_16 PF13191.6 EME69534.1 - 0.003 18.0 0.1 0.0048 17.3 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain ATPase PF06745.13 EME69534.1 - 0.003 16.9 0.0 0.0034 16.8 0.0 1.2 1 0 0 1 1 1 1 KaiC FtsK_SpoIIIE PF01580.18 EME69534.1 - 0.0034 16.8 0.0 0.0046 16.4 0.0 1.2 1 0 0 1 1 1 1 FtsK/SpoIIIE family TrwB_AAD_bind PF10412.9 EME69534.1 - 0.0035 16.3 0.1 0.0048 15.9 0.1 1.1 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain Helicase_RecD PF05127.14 EME69534.1 - 0.0042 17.0 0.1 0.0051 16.7 0.1 1.1 1 0 0 1 1 1 1 Helicase AAA_7 PF12775.7 EME69534.1 - 0.0085 15.6 0.0 0.01 15.4 0.0 1.1 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_22 PF13401.6 EME69534.1 - 0.0098 16.2 0.0 0.015 15.6 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.7 EME69534.1 - 0.014 14.4 0.0 0.017 14.0 0.0 1.1 1 0 0 1 1 1 0 AAA-like domain MeaB PF03308.16 EME69534.1 - 0.02 13.9 0.1 0.027 13.4 0.1 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_5 PF07728.14 EME69534.1 - 0.021 14.8 0.2 0.037 14.0 0.1 1.7 2 1 0 2 2 1 0 AAA domain (dynein-related subfamily) AAA_25 PF13481.6 EME69534.1 - 0.022 14.3 0.2 0.033 13.8 0.2 1.3 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 EME69534.1 - 0.026 14.2 0.0 0.03 14.1 0.0 1.1 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 EME69534.1 - 0.031 14.3 0.0 0.043 13.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 EME69534.1 - 0.037 13.6 0.2 0.19 11.3 0.2 2.0 2 1 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_34 PF13872.6 EME69534.1 - 0.037 12.9 0.1 0.041 12.8 0.1 1.1 1 0 0 1 1 1 0 P-loop containing NTP hydrolase pore-1 Adeno_IVa2 PF02456.15 EME69534.1 - 0.041 12.7 0.0 0.05 12.4 0.0 1.1 1 0 0 1 1 1 0 Adenovirus IVa2 protein ABC_tran PF00005.27 EME69534.1 - 0.054 14.0 0.0 0.068 13.7 0.0 1.3 1 0 0 1 1 1 0 ABC transporter DAP3 PF10236.9 EME69534.1 - 0.064 12.4 0.0 0.11 11.7 0.0 1.4 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 DUF2075 PF09848.9 EME69534.1 - 0.065 12.5 0.1 0.072 12.3 0.1 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) DEAD PF00270.29 EME69534.1 - 0.075 12.8 0.1 0.095 12.5 0.1 1.3 1 1 0 1 1 1 0 DEAD/DEAH box helicase Fer4_NifH PF00142.18 EME69534.1 - 0.1 12.0 0.0 0.11 11.9 0.0 1.2 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family UvrD-helicase PF00580.21 EME69534.1 - 0.1 12.1 0.1 0.1 12.1 0.1 1.1 1 0 0 1 1 1 0 UvrD/REP helicase N-terminal domain Viral_helicase1 PF01443.18 EME69534.1 - 0.14 11.9 0.0 0.18 11.5 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_28 PF13521.6 EME69534.1 - 0.14 12.4 0.0 0.17 12.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 EME69534.1 - 0.15 12.5 0.0 0.18 12.2 0.0 1.3 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Glyco_hydro_15 PF00723.21 EME69535.1 - 9.5e-35 120.2 0.0 8.2e-30 104.0 0.0 2.1 1 1 1 2 2 2 2 Glycosyl hydrolases family 15 TPR_4 PF07721.14 EME69535.1 - 0.0068 16.9 0.3 0.034 14.7 0.3 2.3 1 0 0 1 1 1 1 Tetratricopeptide repeat Trehalase PF01204.18 EME69535.1 - 0.033 13.0 0.0 1.9 7.2 0.0 2.1 2 0 0 2 2 2 0 Trehalase TPR_12 PF13424.6 EME69535.1 - 0.073 13.4 0.4 7.1 7.0 0.0 3.4 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_7 PF13176.6 EME69535.1 - 0.076 13.1 0.3 21 5.5 0.1 3.1 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_10 PF13374.6 EME69535.1 - 0.084 12.8 0.9 0.23 11.4 0.2 2.2 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_2 PF07719.17 EME69535.1 - 0.12 12.5 1.4 5 7.5 0.1 2.9 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_14 PF13428.6 EME69535.1 - 1.7 9.6 6.1 2.4 9.2 0.1 3.6 4 0 0 4 4 4 0 Tetratricopeptide repeat Trehalose_PPase PF02358.16 EME69536.1 - 3.6e-34 117.9 0.0 4.5e-34 117.6 0.0 1.0 1 0 0 1 1 1 1 Trehalose-phosphatase Hydrolase_3 PF08282.12 EME69536.1 - 1.7e-05 24.7 0.0 0.03 14.0 0.0 2.1 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.13 EME69536.1 - 0.025 14.1 0.0 1.5 8.3 0.0 2.1 2 0 0 2 2 2 0 Sucrose-6F-phosphate phosphohydrolase Hydrolase PF00702.26 EME69536.1 - 0.099 12.9 0.0 0.19 12.0 0.0 1.6 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase Glyco_transf_20 PF00982.21 EME69537.1 - 5.4e-121 404.6 0.0 6.5e-121 404.3 0.0 1.0 1 0 0 1 1 1 1 Glycosyltransferase family 20 BetaGal_dom3 PF13363.6 EME69538.1 - 0.04 13.5 0.0 0.07 12.7 0.0 1.3 1 0 0 1 1 1 0 Beta-galactosidase, domain 3 DUF4431 PF14485.6 EME69540.1 - 0.0075 16.0 0.1 6.3 6.7 0.0 3.1 3 0 0 3 3 3 2 Domain of unknown function (DUF4431) Cytochrome_C7 PF14522.6 EME69542.1 - 4.7e-08 32.9 10.8 0.0045 17.0 1.0 3.2 1 1 2 3 3 3 3 Cytochrome c7 and related cytochrome c Cytochrom_NNT PF03264.14 EME69542.1 - 5.5e-06 26.2 3.0 0.02 14.6 0.1 3.2 3 0 0 3 3 3 2 NapC/NirT cytochrome c family, N-terminal region Cytochrome_C554 PF13435.6 EME69542.1 - 7e-06 26.9 14.5 5.7e-05 24.0 4.5 4.1 2 2 2 4 4 4 1 Cytochrome c554 and c-prime Cytochrom_c3_2 PF14537.6 EME69542.1 - 0.00046 20.6 11.0 1.6 9.2 11.0 2.9 1 1 0 1 1 1 1 Cytochrome c3 C1_1 PF00130.22 EME69542.1 - 0.0032 17.3 0.1 0.62 10.0 0.0 2.9 2 2 0 2 2 2 1 Phorbol esters/diacylglycerol binding domain (C1 domain) Paired_CXXCH_1 PF09699.10 EME69542.1 - 0.015 15.1 21.6 5.8 6.7 2.0 4.7 1 1 2 4 4 4 0 Doubled CXXCH motif (Paired_CXXCH_1) Cytochrom_CIII PF02085.16 EME69542.1 - 0.051 13.9 10.0 2.1 8.7 0.2 3.3 2 1 0 2 2 2 0 Class III cytochrome C family Cytochrom_C552 PF02335.15 EME69542.1 - 0.39 9.6 3.9 0.32 9.8 0.3 2.4 2 0 0 2 2 2 0 Cytochrome c552 CCP_MauG PF03150.14 EME69542.1 - 5.9 7.5 20.5 3.7 8.2 0.1 4.8 1 1 4 5 5 5 0 Di-haem cytochrome c peroxidase Cytochrome_CBB3 PF13442.6 EME69542.1 - 6.4 7.2 27.3 4.9 7.5 0.1 5.5 2 2 3 5 5 5 0 Cytochrome C oxidase, cbb3-type, subunit III VWA_N2 PF16164.5 EME69542.1 - 7.8 6.7 9.8 3.4 7.9 0.1 3.8 4 0 0 4 4 4 0 VWA N-terminal Cytochrome_P460 PF16694.5 EME69542.1 - 8.2 6.8 17.9 7.5 6.9 0.2 5.3 5 1 1 6 6 6 0 Cytochrome P460 zf-CHY PF05495.12 EME69542.1 - 9.6 6.8 8.2 8.5 6.9 0.3 2.9 2 1 0 2 2 2 0 CHY zinc finger DUF1223 PF06764.11 EME69543.1 - 1.6e-59 201.3 0.0 1.9e-59 201.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1223) Thioredoxin_3 PF13192.6 EME69543.1 - 0.01 15.9 0.0 5.1 7.2 0.0 2.2 2 0 0 2 2 2 0 Thioredoxin domain Thioredoxin_4 PF13462.6 EME69543.1 - 0.2 11.8 0.0 0.29 11.3 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin Sigma70_r4_2 PF08281.12 EME69544.1 - 9.3e-15 54.0 1.3 3.9e-14 52.1 0.6 2.0 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r2 PF04542.14 EME69544.1 - 1.8e-11 43.6 0.9 2.9e-11 43.0 0.9 1.3 1 0 0 1 1 1 1 Sigma-70 region 2 Sigma70_r4 PF04545.16 EME69544.1 - 6.9e-08 31.9 3.5 6e-07 28.9 0.5 2.2 2 0 0 2 2 2 2 Sigma-70, region 4 Sigma70_ECF PF07638.11 EME69544.1 - 0.00082 19.3 0.9 0.03 14.2 0.9 2.1 1 1 0 1 1 1 1 ECF sigma factor NrsF PF06532.11 EME69545.1 - 3.3e-33 115.1 21.8 4.1e-33 114.8 21.8 1.0 1 0 0 1 1 1 1 Negative regulator of sigma F EAL PF00563.20 EME69546.1 - 2e-72 243.6 0.0 3.8e-72 242.6 0.0 1.5 1 0 0 1 1 1 1 EAL domain GGDEF PF00990.21 EME69546.1 - 1.3e-48 164.8 0.6 2.9e-48 163.6 0.1 1.9 2 0 0 2 2 2 1 Diguanylate cyclase, GGDEF domain PAS_3 PF08447.12 EME69546.1 - 1.8e-28 98.7 0.0 2.8e-19 69.2 0.0 2.7 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 EME69546.1 - 2e-17 63.4 0.0 1.8e-09 37.8 0.0 2.8 3 0 0 3 3 3 2 PAS domain PAS PF00989.25 EME69546.1 - 6.3e-15 55.2 0.0 2.3e-07 30.8 0.0 3.0 3 0 0 3 3 3 2 PAS fold PAS_4 PF08448.10 EME69546.1 - 1e-12 48.3 0.3 6.3e-05 23.2 0.0 3.3 3 0 0 3 3 3 2 PAS fold Response_reg PF00072.24 EME69546.1 - 3.5e-11 43.3 0.0 8.5e-11 42.0 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain PAS_8 PF13188.7 EME69546.1 - 6.3e-05 22.9 0.0 0.064 13.3 0.0 3.0 2 0 0 2 2 2 2 PAS domain Response_reg PF00072.24 EME69547.1 - 6.5e-20 71.4 0.0 7.7e-20 71.1 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.26 EME69548.1 - 1.4e-41 141.5 0.0 8.8e-22 77.7 0.0 2.6 2 0 0 2 2 2 2 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 EME69548.1 - 1.5e-26 92.2 1.5 7.9e-13 48.2 0.4 3.0 2 0 0 2 2 2 2 His Kinase A (phospho-acceptor) domain Response_reg PF00072.24 EME69548.1 - 1.5e-23 83.1 0.4 3.9e-23 81.8 0.4 1.8 1 0 0 1 1 1 1 Response regulator receiver domain PAS PF00989.25 EME69548.1 - 2.7e-10 40.2 0.0 1.1e-07 31.8 0.0 2.9 2 0 0 2 2 2 1 PAS fold PAS_4 PF08448.10 EME69548.1 - 7e-10 39.1 0.2 0.0001 22.5 0.0 3.0 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 EME69548.1 - 8.4e-10 38.8 0.0 3.6e-05 24.0 0.0 2.7 2 0 0 2 2 2 2 PAS domain HATPase_c_2 PF13581.6 EME69548.1 - 4.6e-07 29.8 0.1 0.027 14.4 0.0 2.9 3 0 0 3 3 2 2 Histidine kinase-like ATPase domain PAS_3 PF08447.12 EME69548.1 - 7.1e-06 26.2 0.0 9.5e-05 22.6 0.0 2.6 2 0 0 2 2 2 1 PAS fold HATPase_c_5 PF14501.6 EME69548.1 - 1e-05 25.3 0.0 0.0067 16.3 0.0 2.4 2 0 0 2 2 2 2 GHKL domain PAS_8 PF13188.7 EME69548.1 - 0.00019 21.4 0.1 0.00088 19.2 0.1 2.2 1 0 0 1 1 1 1 PAS domain HATPase_c_3 PF13589.6 EME69548.1 - 0.00033 20.5 0.0 0.46 10.3 0.0 2.6 3 0 0 3 3 3 2 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HPTransfase PF10090.9 EME69548.1 - 0.025 14.4 0.0 0.23 11.3 0.0 2.6 2 0 0 2 2 2 0 Histidine phosphotransferase C-terminal domain UPF0449 PF15136.6 EME69548.1 - 1.4 9.4 5.7 1.6 9.2 0.8 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0449 Seryl_tRNA_N PF02403.22 EME69548.1 - 1.9 8.8 5.4 11 6.3 1.6 2.5 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Rho_Binding PF08912.11 EME69548.1 - 7.7 7.4 5.9 2.4 9.0 0.3 2.7 2 1 1 3 3 3 0 Rho Binding MCPsignal PF00015.21 EME69549.1 - 2.3e-06 27.5 3.2 2.3e-06 27.5 3.2 3.4 2 1 0 2 2 2 1 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF4164 PF13747.6 EME69549.1 - 0.069 13.4 12.0 0.78 10.1 0.1 4.3 3 1 0 3 3 3 0 Domain of unknown function (DUF4164) Baculo_PEP_C PF04513.12 EME69549.1 - 0.19 11.8 1.5 31 4.6 0.1 4.1 3 1 1 4 4 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus CLZ PF16526.5 EME69549.1 - 1.9 8.9 5.9 11 6.5 0.4 4.2 5 0 0 5 5 5 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels CheW PF01584.19 EME69550.1 - 6.9e-26 90.5 0.1 7.9e-26 90.3 0.1 1.0 1 0 0 1 1 1 1 CheW-like domain MCPsignal PF00015.21 EME69551.1 - 2.6e-31 108.7 22.6 2.6e-31 108.7 22.6 5.3 3 2 2 5 5 5 2 Methyl-accepting chemotaxis protein (MCP) signalling domain 4HB_MCP_1 PF12729.7 EME69551.1 - 1.4e-30 106.1 1.1 1.4e-30 106.1 1.1 4.0 4 0 0 4 4 4 1 Four helix bundle sensory module for signal transduction TarH PF02203.15 EME69551.1 - 4.9e-18 65.7 1.4 4.9e-18 65.7 1.4 4.0 3 1 0 3 3 3 1 Tar ligand binding domain homologue HAMP PF00672.25 EME69551.1 - 3e-05 24.3 9.7 6.8e-05 23.2 0.2 4.6 4 0 0 4 4 4 1 HAMP domain DUF948 PF06103.11 EME69551.1 - 0.16 12.3 31.0 0.91 9.8 2.4 6.2 4 3 1 5 5 5 0 Bacterial protein of unknown function (DUF948) RasGAP_C PF03836.15 EME69551.1 - 0.51 10.5 3.1 13 6.0 0.1 3.2 3 0 0 3 3 3 0 RasGAP C-terminus Jnk-SapK_ap_N PF09744.9 EME69551.1 - 0.83 9.9 11.4 0.34 11.1 0.6 3.1 3 0 0 3 3 3 0 JNK_SAPK-associated protein-1 CpXC PF14353.6 EME69551.1 - 3.6 7.6 5.1 2 8.5 0.2 2.9 4 1 0 4 4 4 0 CpXC protein Dynein_light PF01221.18 EME69551.1 - 4 7.8 7.8 30 5.0 0.0 3.7 4 0 0 4 4 4 0 Dynein light chain type 1 CheW PF01584.19 EME69552.1 - 3.6e-29 101.1 0.7 4.5e-29 100.9 0.7 1.0 1 0 0 1 1 1 1 CheW-like domain CheW PF01584.19 EME69553.1 - 2.6e-25 88.7 0.3 4.8e-25 87.8 0.3 1.4 1 0 0 1 1 1 1 CheW-like domain HATPase_c PF02518.26 EME69553.1 - 4.3e-18 65.9 0.0 4.7e-16 59.3 0.0 2.6 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Hpt PF01627.23 EME69553.1 - 1.4e-16 60.5 0.6 1.4e-16 60.5 0.6 2.7 2 0 0 2 2 2 1 Hpt domain H-kinase_dim PF02895.14 EME69553.1 - 6.3e-14 52.1 0.8 2.3e-13 50.3 0.8 2.0 1 0 0 1 1 1 1 Signal transducing histidine kinase, homodimeric domain SPO22 PF08631.10 EME69553.1 - 0.0044 16.5 0.0 0.013 15.1 0.0 1.8 1 0 0 1 1 1 1 Meiosis protein SPO22/ZIP4 like HATPase_c_3 PF13589.6 EME69553.1 - 0.046 13.5 0.0 0.13 12.1 0.0 1.9 1 1 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PBC PF03792.13 EME69553.1 - 0.082 12.7 0.1 0.15 11.8 0.1 1.4 1 0 0 1 1 1 0 PBC domain Rnk_N PF14760.6 EME69553.1 - 0.66 10.5 5.3 0.31 11.6 0.3 3.1 3 0 0 3 3 3 0 Rnk N-terminus STAS_2 PF13466.6 EME69554.1 - 1e-14 54.6 0.5 1.2e-14 54.4 0.5 1.1 1 0 0 1 1 1 1 STAS domain STAS PF01740.21 EME69554.1 - 0.00035 20.2 0.0 0.00041 20.0 0.0 1.1 1 0 0 1 1 1 1 STAS domain FCD PF07729.12 EME69554.1 - 0.01 16.3 0.0 0.011 16.1 0.0 1.2 1 0 0 1 1 1 0 FCD domain EAL PF00563.20 EME69555.1 - 2.6e-74 249.8 0.0 6.1e-74 248.5 0.0 1.7 2 0 0 2 2 2 1 EAL domain GGDEF PF00990.21 EME69555.1 - 1.2e-44 151.9 0.1 2.3e-44 151.0 0.1 1.5 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain Response_reg PF00072.24 EME69555.1 - 8.3e-20 71.0 0.0 2.8e-19 69.3 0.1 2.0 2 0 0 2 2 2 1 Response regulator receiver domain PAS_9 PF13426.7 EME69555.1 - 1.3e-17 63.9 0.0 2.9e-17 62.8 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 EME69555.1 - 3.9e-14 52.6 0.0 9.7e-14 51.3 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS_3 PF08447.12 EME69555.1 - 1.3e-12 47.9 0.0 4e-12 46.2 0.0 1.9 2 0 0 2 2 2 1 PAS fold PAS_4 PF08448.10 EME69555.1 - 3.6e-10 40.1 0.1 6.5e-09 36.0 0.0 2.8 2 0 0 2 2 2 1 PAS fold PAS_8 PF13188.7 EME69555.1 - 1.1e-08 34.8 0.0 1.9e-05 24.6 0.0 3.1 2 0 0 2 2 2 2 PAS domain GGDEF_2 PF17853.1 EME69555.1 - 0.0025 18.1 2.5 0.0046 17.2 0.6 2.5 2 0 0 2 2 2 1 GGDEF-like domain CheB_methylest PF01339.17 EME69556.1 - 2.8e-61 206.2 0.9 7.2e-60 201.6 0.2 2.8 3 0 0 3 3 3 1 CheB methylesterase Response_reg PF00072.24 EME69556.1 - 4.4e-24 84.8 0.1 1e-23 83.7 0.1 1.7 1 0 0 1 1 1 1 Response regulator receiver domain Sulfotransfer_4 PF17784.1 EME69556.1 - 0.047 13.5 0.0 2.9 7.7 0.0 2.2 2 0 0 2 2 2 0 Sulfotransferase domain HK97-gp10_like PF04883.12 EME69556.1 - 0.21 12.6 0.2 4.3 8.4 0.1 2.9 2 1 1 3 3 3 0 Bacteriophage HK97-gp10, putative tail-component CheR PF01739.18 EME69557.1 - 1.3e-56 191.2 0.0 1.7e-56 190.8 0.0 1.1 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain CheR_N PF03705.15 EME69557.1 - 2.9e-15 55.7 0.0 5e-15 54.9 0.0 1.4 1 0 0 1 1 1 1 CheR methyltransferase, all-alpha domain Methyltransf_25 PF13649.6 EME69557.1 - 2.7e-05 24.8 0.0 0.0022 18.6 0.0 2.6 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 EME69557.1 - 0.00015 22.4 0.0 0.0013 19.4 0.0 2.2 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 EME69557.1 - 0.0012 19.4 0.0 0.011 16.3 0.0 2.2 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 EME69557.1 - 0.0066 16.3 0.0 0.0099 15.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 EME69557.1 - 0.1 12.4 0.0 0.2 11.5 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Response_reg PF00072.24 EME69558.1 - 8.5e-28 96.8 0.0 9.5e-28 96.6 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain GerE PF00196.19 EME69559.1 - 2.6e-18 65.3 1.8 3.9e-18 64.8 1.8 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Response_reg PF00072.24 EME69559.1 - 4.3e-17 62.3 0.0 6.3e-17 61.8 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain Sigma70_r4_2 PF08281.12 EME69559.1 - 6.9e-09 35.3 0.7 1.2e-08 34.5 0.7 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_38 PF13936.6 EME69559.1 - 0.0038 16.9 0.0 0.033 14.0 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 EME69559.1 - 0.023 14.2 0.6 0.04 13.5 0.6 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 S4 PF01479.25 EME69559.1 - 0.041 13.6 0.1 0.1 12.3 0.1 1.7 1 0 0 1 1 1 0 S4 domain HTH_23 PF13384.6 EME69559.1 - 0.049 13.5 0.1 0.27 11.1 0.0 2.1 1 1 1 2 2 2 0 Homeodomain-like domain Fn_bind PF02986.14 EME69559.1 - 0.11 12.2 0.1 0.26 11.0 0.1 1.6 1 0 0 1 1 1 0 Fibronectin binding repeat Herpes_UL87 PF03043.14 EME69559.1 - 0.15 10.5 0.1 0.21 10.0 0.1 1.1 1 0 0 1 1 1 0 Herpesvirus UL87 family Response_reg PF00072.24 EME69560.1 - 1.8e-24 86.1 0.1 2.1e-24 85.9 0.1 1.0 1 0 0 1 1 1 1 Response regulator receiver domain UPF0180 PF03698.13 EME69560.1 - 0.015 15.4 0.0 0.03 14.5 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0180) BRCT_3 PF18428.1 EME69560.1 - 0.026 14.6 0.0 0.047 13.8 0.0 1.4 1 0 0 1 1 1 0 BRCA1 C Terminus (BRCT) domain OpuAC PF04069.12 EME69560.1 - 0.13 11.8 0.0 0.13 11.8 0.0 1.1 1 0 0 1 1 1 0 Substrate binding domain of ABC-type glycine betaine transport system FleQ PF06490.11 EME69560.1 - 0.15 12.4 0.0 0.19 12.1 0.0 1.3 1 1 0 1 1 1 0 Flagellar regulatory protein FleQ CAAP1 PF15335.6 EME69561.1 - 2.2e-15 56.9 0.0 10 6.8 0.0 17.3 18 5 4 23 23 23 2 Caspase activity and apoptosis inhibitor 1 HTH_26 PF13443.6 EME69561.1 - 0.11 13.0 91.5 19 5.8 0.2 28.7 19 10 11 30 30 30 0 Cro/C1-type HTH DNA-binding domain Pepsin-I3 PF06394.13 EME69561.1 - 0.12 12.6 0.0 0.81 9.9 0.0 2.5 1 0 0 1 1 1 0 Pepsin inhibitor-3-like repeated domain IspA PF04279.15 EME69562.1 - 1.9e-58 197.5 7.4 2.2e-58 197.4 7.4 1.0 1 0 0 1 1 1 1 Intracellular septation protein A SIS PF01380.22 EME69563.1 - 4e-56 188.4 0.2 1.5e-29 102.5 0.1 2.3 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.6 EME69563.1 - 9.8e-24 84.1 0.1 2.2e-23 82.9 0.1 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 EME69563.1 - 1.8e-16 60.2 0.0 3.8e-16 59.1 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.6 EME69563.1 - 0.0031 16.4 0.0 0.0052 15.7 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferases class-II GATase_2 PF00310.21 EME69563.1 - 0.17 10.5 0.1 0.28 9.9 0.1 1.2 1 0 0 1 1 1 0 Glutamine amidotransferases class-II Hexapep PF00132.24 EME69564.1 - 1.5e-26 91.1 18.2 1.6e-08 34.0 1.4 4.5 2 1 2 4 4 4 4 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 EME69564.1 - 1.8e-21 77.2 1.0 2.5e-21 76.7 1.0 1.4 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 EME69564.1 - 1.2e-11 44.7 0.2 4.7e-10 39.6 0.2 2.2 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Hexapep_2 PF14602.6 EME69564.1 - 4e-10 39.3 15.4 8.8e-09 35.0 2.1 4.5 4 0 0 4 4 4 2 Hexapeptide repeat of succinyl-transferase NTP_transferase PF00483.23 EME69564.1 - 1.3e-05 24.9 0.0 2e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyl transferase CofC PF01983.16 EME69564.1 - 0.11 11.7 0.0 0.16 11.1 0.0 1.2 1 0 0 1 1 1 0 Guanylyl transferase CofC like CTP_transf_3 PF02348.19 EME69564.1 - 0.25 11.2 0.0 0.79 9.6 0.0 1.7 1 1 0 1 1 1 0 Cytidylyltransferase HAD_2 PF13419.6 EME69565.1 - 7.3e-35 120.7 0.0 8.3e-35 120.5 0.0 1.0 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 EME69565.1 - 8e-22 78.6 0.2 3.5e-21 76.5 0.2 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 EME69565.1 - 1.2e-11 45.4 0.0 1.6e-11 44.9 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 EME69565.1 - 1.5e-10 41.0 0.1 4.1e-10 39.6 0.0 1.8 2 0 0 2 2 2 1 HAD-hyrolase-like Hydrolase_6 PF13344.6 EME69565.1 - 3.5e-06 27.0 0.0 0.00013 22.0 0.0 2.5 2 1 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 EME69565.1 - 0.00028 20.7 0.0 6 6.5 0.0 3.0 3 0 0 3 3 3 2 haloacid dehalogenase-like hydrolase NIF PF03031.18 EME69565.1 - 0.015 15.0 0.0 0.42 10.4 0.0 2.1 1 1 0 1 1 1 0 NLI interacting factor-like phosphatase Acid_PPase PF12689.7 EME69565.1 - 0.17 11.7 0.0 5.1 6.9 0.0 2.1 2 0 0 2 2 2 0 Acid Phosphatase EAL PF00563.20 EME69566.1 - 2.3e-73 246.7 0.0 4e-73 245.8 0.0 1.4 1 0 0 1 1 1 1 EAL domain GGDEF PF00990.21 EME69566.1 - 1.5e-47 161.3 0.0 2.4e-47 160.7 0.0 1.3 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain Response_reg PF00072.24 EME69566.1 - 9.7e-19 67.6 0.0 3.8e-18 65.7 0.0 2.1 2 0 0 2 2 2 1 Response regulator receiver domain PAS_9 PF13426.7 EME69566.1 - 1.7e-13 50.7 0.0 6.6e-13 48.8 0.0 2.0 2 0 0 2 2 2 1 PAS domain PAS PF00989.25 EME69566.1 - 3.9e-13 49.4 0.0 1.1e-12 48.0 0.0 1.8 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.10 EME69566.1 - 1.5e-08 34.8 0.3 3.2e-07 30.6 0.1 3.3 4 0 0 4 4 4 1 PAS fold PAS_8 PF13188.7 EME69566.1 - 1.3e-07 31.5 0.0 9.3e-07 28.7 0.0 2.6 1 0 0 1 1 1 1 PAS domain Hpt PF01627.23 EME69566.1 - 2.2e-05 24.6 0.6 0.00012 22.2 0.6 2.4 1 0 0 1 1 1 1 Hpt domain PAS_3 PF08447.12 EME69566.1 - 0.00018 21.7 0.0 0.00086 19.5 0.0 2.2 3 0 0 3 3 3 1 PAS fold Rrf2 PF02082.20 EME69567.1 - 4.5e-21 75.0 0.1 6.4e-21 74.5 0.1 1.2 1 0 0 1 1 1 1 Transcriptional regulator MarR_2 PF12802.7 EME69567.1 - 4e-05 23.4 0.1 6.9e-05 22.7 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 EME69567.1 - 0.00093 19.6 0.1 0.0016 18.9 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 EME69567.1 - 0.0057 16.6 0.2 0.01 15.8 0.2 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain TrmB PF01978.19 EME69567.1 - 0.011 15.6 0.0 0.017 15.0 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Tn916-Xis PF09035.10 EME69567.1 - 0.02 15.1 0.0 0.094 12.9 0.0 1.9 2 0 0 2 2 2 0 Excisionase from transposon Tn916 HTH_42 PF06224.12 EME69567.1 - 0.025 14.1 0.1 0.031 13.8 0.1 1.2 1 1 0 1 1 1 0 Winged helix DNA-binding domain HTH_17 PF12728.7 EME69567.1 - 0.026 14.7 0.1 0.043 14.0 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain SgrR_N PF12793.7 EME69567.1 - 0.057 13.6 0.0 0.081 13.2 0.0 1.2 1 0 0 1 1 1 0 Sugar transport-related sRNA regulator N-term B-block_TFIIIC PF04182.12 EME69567.1 - 0.078 13.2 0.0 0.11 12.7 0.0 1.2 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC RPA_C PF08784.11 EME69567.1 - 0.079 13.6 0.0 0.11 13.2 0.0 1.2 1 0 0 1 1 1 0 Replication protein A C terminal PuR_N PF09182.10 EME69567.1 - 0.11 12.4 0.0 0.24 11.3 0.0 1.6 1 1 0 1 1 1 0 Bacterial purine repressor, N-terminal HrcA_DNA-bdg PF03444.15 EME69567.1 - 0.17 11.6 0.0 0.23 11.1 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HATPase_c PF02518.26 EME69568.1 - 2.2e-24 86.1 0.0 5.4e-24 84.9 0.0 1.6 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 EME69568.1 - 1.9e-11 44.1 0.0 3.8e-11 43.2 0.0 1.5 1 0 0 1 1 1 1 PAS domain HisKA PF00512.25 EME69568.1 - 9.1e-11 41.6 0.5 2.8e-10 40.1 0.0 2.1 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.7 EME69568.1 - 1.2e-06 28.4 0.0 3.3e-06 27.0 0.0 1.8 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 EME69568.1 - 1.9e-06 27.9 0.0 5.1e-06 26.5 0.0 1.8 2 0 0 2 2 2 1 PAS fold PAS_3 PF08447.12 EME69568.1 - 1.9e-05 24.9 0.0 0.00069 19.9 0.0 2.4 2 0 0 2 2 2 1 PAS fold PAS_4 PF08448.10 EME69568.1 - 9e-05 22.7 0.4 0.00072 19.8 0.0 2.6 3 0 0 3 3 3 1 PAS fold HATPase_c_5 PF14501.6 EME69568.1 - 0.006 16.5 0.0 0.011 15.7 0.0 1.3 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.6 EME69568.1 - 0.021 14.8 0.0 0.048 13.6 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain Thr_synth_N PF14821.6 EME69569.1 - 7e-28 96.7 0.0 2.2e-27 95.0 0.0 1.9 1 0 0 1 1 1 1 Threonine synthase N terminus PALP PF00291.25 EME69569.1 - 4.4e-23 82.1 1.3 6e-22 78.4 1.3 2.0 1 1 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Ntox44 PF15607.6 EME69569.1 - 0.11 12.8 0.0 0.22 11.8 0.0 1.5 1 0 0 1 1 1 0 Bacterial toxin 44 RELT PF12606.8 EME69569.1 - 0.16 11.0 0.0 0.29 10.2 0.0 1.4 1 0 0 1 1 1 0 Tumour necrosis factor receptor superfamily member 19 Peptidase_M16 PF00675.20 EME69570.1 - 1.4e-44 151.6 0.0 7.8e-43 146.0 0.0 2.2 2 0 0 2 2 2 2 Insulinase (Peptidase family M16) Peptidase_M16_C PF05193.21 EME69570.1 - 2e-41 142.0 0.0 3.5e-41 141.2 0.0 1.4 1 0 0 1 1 1 1 Peptidase M16 inactive domain Peripla_BP_6 PF13458.6 EME69571.1 - 2.2e-58 198.5 4.3 2.9e-58 198.2 4.3 1.0 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 EME69571.1 - 1.2e-17 64.0 0.0 1.6e-17 63.6 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.28 EME69571.1 - 0.00049 19.3 0.0 0.61 9.1 0.0 2.1 2 0 0 2 2 2 2 Receptor family ligand binding region DUF2064 PF09837.9 EME69571.1 - 0.01 15.7 0.1 2.2 8.1 0.0 2.5 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2064) DsbC PF11412.8 EME69572.1 - 8.6e-19 67.8 0.0 1.4e-18 67.1 0.0 1.3 1 0 0 1 1 1 1 Disulphide bond corrector protein DsbC Thioredoxin_7 PF13899.6 EME69572.1 - 1.4e-11 44.4 0.0 2.5e-11 43.6 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin-like DsbD PF02683.15 EME69572.1 - 3.7e-07 30.2 13.8 6e-07 29.6 13.8 1.3 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region Thioredox_DsbH PF03190.15 EME69572.1 - 0.042 13.8 0.0 0.072 13.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF255 NrfD PF03916.14 EME69574.1 - 4.8e-45 154.5 29.9 4.8e-45 154.5 29.9 1.6 1 1 0 1 1 1 1 Polysulphide reductase, NrfD Fer4_11 PF13247.6 EME69575.1 - 3.4e-19 68.8 18.5 1.3e-18 67.0 14.4 2.9 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 EME69575.1 - 1.7e-12 47.7 27.8 6e-07 30.0 7.9 3.0 2 2 2 4 4 4 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 EME69575.1 - 1e-09 38.4 27.7 3.7e-07 30.1 7.8 2.9 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.6 EME69575.1 - 2.4e-08 34.0 25.8 0.00028 21.0 7.3 3.3 2 2 1 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 EME69575.1 - 8.7e-08 31.9 37.9 4.7e-06 26.4 2.7 4.8 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4 PF00037.27 EME69575.1 - 4.9e-06 26.1 1.4 4.9e-06 26.1 1.4 5.6 6 1 0 6 6 6 2 4Fe-4S binding domain Fer4_2 PF12797.7 EME69575.1 - 5.3e-06 26.2 34.0 0.0004 20.3 1.5 4.5 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_21 PF14697.6 EME69575.1 - 6.7e-05 22.9 1.4 6.7e-05 22.9 1.4 3.8 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_3 PF12798.7 EME69575.1 - 0.00038 21.2 41.1 0.058 14.4 7.1 4.5 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_8 PF13183.6 EME69575.1 - 0.0015 18.9 24.6 0.14 12.6 8.5 2.8 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 EME69575.1 - 0.0042 18.0 26.1 0.053 14.5 1.8 4.7 4 1 1 5 5 5 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 EME69575.1 - 0.024 15.1 2.0 0.024 15.1 2.0 4.5 4 1 0 4 4 4 0 4Fe-4S binding domain Rieske_3 PF18465.1 EME69575.1 - 0.027 14.7 0.1 0.064 13.5 0.1 1.6 1 0 0 1 1 1 0 Rieske 3Fe-4S Fer4_13 PF13370.6 EME69575.1 - 0.046 14.3 0.6 0.046 14.3 0.6 3.9 5 0 0 5 5 4 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_17 PF13534.6 EME69575.1 - 0.078 13.5 25.7 1.6 9.3 9.5 3.9 2 2 1 3 3 3 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 EME69575.1 - 6.1 7.1 22.0 0.43 10.8 7.3 3.1 1 1 2 3 3 3 0 4Fe-4S dicluster domain Paired_CXXCH_1 PF09699.10 EME69576.1 - 0.0013 18.4 10.9 0.0078 15.9 4.0 2.6 1 1 1 2 2 2 2 Doubled CXXCH motif (Paired_CXXCH_1) Cytochrome_C7 PF14522.6 EME69576.1 - 0.0099 15.9 9.5 0.5 10.4 9.5 2.6 1 1 0 1 1 1 1 Cytochrome c7 and related cytochrome c Cytochrome_C554 PF13435.6 EME69576.1 - 0.066 14.1 9.6 1.2 10.1 3.6 2.4 1 1 1 2 2 2 0 Cytochrome c554 and c-prime zinc-ribbons_6 PF07191.12 EME69576.1 - 0.089 12.8 4.4 0.16 12.0 4.4 1.4 1 0 0 1 1 1 0 zinc-ribbons Cytochrom_c3_2 PF14537.6 EME69576.1 - 0.3 11.6 10.4 3.1 8.3 5.3 2.5 1 1 1 2 2 2 0 Cytochrome c3 DZR PF12773.7 EME69576.1 - 0.83 9.7 9.4 3.5 7.7 3.7 2.3 1 1 1 2 2 2 0 Double zinc ribbon Cytochrome_CBB3 PF13442.6 EME69576.1 - 6.4 7.2 13.1 15 6.0 1.2 3.2 1 1 1 2 2 2 0 Cytochrome C oxidase, cbb3-type, subunit III Pyr_redox_2 PF07992.14 EME69577.1 - 9.1e-23 80.9 0.4 3.3e-22 79.1 0.4 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_20 PF14691.6 EME69577.1 - 2e-15 56.5 12.2 4.1e-12 45.9 0.0 3.3 2 1 1 3 3 3 2 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NAD_binding_8 PF13450.6 EME69577.1 - 2.8e-10 40.3 0.2 1.1e-09 38.4 0.2 2.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 EME69577.1 - 4e-09 36.9 6.0 0.00011 22.6 0.3 3.3 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Fer4_21 PF14697.6 EME69577.1 - 1.9e-08 34.3 14.1 1.3e-07 31.6 14.1 2.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain DAO PF01266.24 EME69577.1 - 7.4e-07 29.1 1.5 1.5e-06 28.0 0.7 1.9 2 0 0 2 2 2 1 FAD dependent oxidoreductase Fer4_7 PF12838.7 EME69577.1 - 1.5e-06 28.7 17.3 1.5e-06 28.7 17.3 3.4 3 1 1 4 4 2 1 4Fe-4S dicluster domain FAD_binding_2 PF00890.24 EME69577.1 - 2.9e-06 26.6 0.5 5.6e-06 25.7 0.5 1.4 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.14 EME69577.1 - 3.6e-06 25.9 0.2 5.9e-06 25.2 0.2 1.3 1 0 0 1 1 1 1 HI0933-like protein FAD_oxidored PF12831.7 EME69577.1 - 3.8e-06 26.5 0.4 3.8e-06 26.5 0.4 1.7 2 0 0 2 2 1 1 FAD dependent oxidoreductase Fer4_9 PF13187.6 EME69577.1 - 9.1e-06 25.7 14.6 9.1e-06 25.7 14.6 3.6 2 2 2 4 4 4 1 4Fe-4S dicluster domain Fer4 PF00037.27 EME69577.1 - 1e-05 25.1 3.9 1e-05 25.1 3.9 4.1 3 1 1 4 4 3 1 4Fe-4S binding domain Pyr_redox_3 PF13738.6 EME69577.1 - 1.1e-05 24.9 0.2 0.0028 16.9 0.0 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.24 EME69577.1 - 1.3e-05 24.7 0.1 2e-05 24.1 0.1 1.2 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase Thi4 PF01946.17 EME69577.1 - 2.5e-05 23.6 0.4 6.5e-05 22.3 0.1 1.8 2 0 0 2 2 1 1 Thi4 family FAD_binding_3 PF01494.19 EME69577.1 - 0.00013 21.3 0.2 0.00022 20.6 0.2 1.3 1 0 0 1 1 1 1 FAD binding domain AlaDh_PNT_C PF01262.21 EME69577.1 - 0.00017 20.9 3.9 0.036 13.4 0.1 2.9 2 1 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain GIDA PF01134.22 EME69577.1 - 0.00034 19.8 0.6 0.00034 19.8 0.6 1.6 2 0 0 2 2 2 1 Glucose inhibited division protein A Fer4_10 PF13237.6 EME69577.1 - 0.00081 19.5 16.5 0.00081 19.5 16.5 3.4 3 1 0 3 3 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 EME69577.1 - 0.0013 18.7 2.6 0.0013 18.7 2.6 4.5 4 1 0 4 4 2 1 4Fe-4S binding domain NAD_binding_7 PF13241.6 EME69577.1 - 0.0018 18.7 4.9 0.0065 16.9 0.1 3.3 4 0 0 4 4 3 1 Putative NAD(P)-binding Fer4_6 PF12837.7 EME69577.1 - 0.0026 17.7 2.5 0.0026 17.7 2.5 4.2 3 1 0 3 3 1 1 4Fe-4S binding domain Fer4_8 PF13183.6 EME69577.1 - 0.017 15.6 16.5 0.063 13.7 15.5 2.6 2 1 0 2 2 2 0 4Fe-4S dicluster domain Trp_halogenase PF04820.14 EME69577.1 - 0.047 12.5 0.1 0.12 11.3 0.1 1.6 1 0 0 1 1 1 0 Tryptophan halogenase Fer4_17 PF13534.6 EME69577.1 - 0.053 14.1 18.1 0.38 11.3 15.9 3.1 2 1 1 3 3 3 0 4Fe-4S dicluster domain NAD_binding_9 PF13454.6 EME69577.1 - 0.062 13.3 0.2 0.16 11.9 0.2 1.7 1 0 0 1 1 1 0 FAD-NAD(P)-binding Lycopene_cycl PF05834.12 EME69577.1 - 0.066 12.2 0.1 0.11 11.5 0.1 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein Fer4_16 PF13484.6 EME69577.1 - 0.34 11.9 22.7 0.12 13.3 3.2 3.4 2 1 2 4 4 3 0 4Fe-4S double cluster binding domain 3HCDH_N PF02737.18 EME69577.1 - 0.38 10.6 1.1 0.59 10.0 0.3 1.7 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Fer4_18 PF13746.6 EME69577.1 - 1.5 9.1 16.8 0.34 11.1 1.7 3.2 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 EME69577.1 - 7 7.3 16.1 0.41 11.2 1.6 3.1 2 1 1 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_8 PF13183.6 EME69578.1 - 1.1e-09 38.6 3.8 1.9e-09 37.9 1.7 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 EME69578.1 - 2.6e-09 37.5 1.7 2.6e-09 37.5 1.7 1.8 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 EME69578.1 - 2e-06 28.3 0.5 2e-06 28.3 0.5 2.1 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 EME69578.1 - 8.2e-06 25.8 3.6 0.024 14.7 0.6 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain CCG PF02754.16 EME69578.1 - 0.00012 22.2 0.5 0.0036 17.5 0.2 2.5 2 0 0 2 2 2 1 Cysteine-rich domain Fer4_9 PF13187.6 EME69578.1 - 0.00048 20.2 9.5 0.038 14.2 11.0 2.6 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 EME69578.1 - 0.0013 18.7 9.9 0.2 11.8 1.1 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.27 EME69578.1 - 0.0015 18.3 11.6 0.18 11.7 4.0 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 EME69578.1 - 0.011 16.2 11.6 0.48 11.1 1.8 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_2 PF12797.7 EME69578.1 - 0.018 15.1 12.5 0.23 11.6 1.5 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.6 EME69578.1 - 0.098 13.6 11.7 0.32 12.0 0.9 2.9 3 0 0 3 3 3 0 4Fe-4S double cluster binding domain Fer4_18 PF13746.6 EME69578.1 - 0.11 12.7 4.6 1 9.6 0.3 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 EME69578.1 - 0.45 11.4 5.9 7.4 7.5 0.3 2.8 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 EME69578.1 - 3.1 8.0 11.1 4 7.6 0.8 2.7 3 0 0 3 3 2 0 4Fe-4S dicluster domain Nitrate_red_gam PF02665.14 EME69579.1 - 5.3e-13 49.0 13.1 5.3e-13 49.0 13.1 2.3 2 1 0 2 2 2 1 Nitrate reductase gamma subunit DsrC PF04358.13 EME69580.1 - 1.1e-46 157.7 0.0 1.3e-46 157.6 0.0 1.0 1 0 0 1 1 1 1 DsrC like protein PC4 PF02229.16 EME69580.1 - 0.11 12.1 1.0 0.33 10.6 0.0 2.0 2 0 0 2 2 2 0 Transcriptional Coactivator p15 (PC4) DUF1615 PF07759.12 EME69580.1 - 0.17 11.0 0.0 0.2 10.8 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1615) DsrH PF04077.12 EME69581.1 - 3.3e-26 91.2 0.0 3.6e-26 91.1 0.0 1.0 1 0 0 1 1 1 1 DsrH like protein DrsE PF02635.15 EME69582.1 - 5.1e-27 94.6 0.0 5.6e-27 94.4 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family DrsE PF02635.15 EME69583.1 - 9.3e-30 103.4 0.0 1e-29 103.3 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family NIR_SIR PF01077.22 EME69584.1 - 2e-27 95.6 0.0 2.8e-27 95.2 0.0 1.1 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 EME69584.1 - 6.7e-09 35.5 0.0 3.2e-08 33.3 0.0 2.0 2 0 0 2 2 2 1 Nitrite/Sulfite reductase ferredoxin-like half domain Fer4_21 PF14697.6 EME69584.1 - 1.3 9.2 14.5 0.11 12.6 7.9 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_9 PF13187.6 EME69584.1 - 1.8 8.8 12.5 0.084 13.1 6.8 1.7 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4 PF00037.27 EME69584.1 - 4.9 7.1 14.1 2.9 7.9 8.6 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_7 PF12838.7 EME69584.1 - 8.8 7.0 13.9 23 5.7 13.8 1.8 1 1 0 1 1 1 0 4Fe-4S dicluster domain NIR_SIR PF01077.22 EME69585.1 - 5.5e-33 113.7 0.0 8.4e-33 113.1 0.0 1.3 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 EME69585.1 - 3.2e-08 33.3 0.0 6.8e-08 32.2 0.0 1.6 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain Fer4_7 PF12838.7 EME69585.1 - 0.00022 21.8 5.1 0.0078 16.8 5.5 2.6 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 EME69585.1 - 0.0085 16.2 2.2 0.0085 16.2 2.2 2.6 2 1 1 3 3 3 1 4Fe-4S dicluster domain Fer4_13 PF13370.6 EME69585.1 - 0.047 14.2 4.3 0.24 12.0 0.1 3.0 3 0 0 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_21 PF14697.6 EME69585.1 - 0.14 12.3 11.1 0.2 11.8 3.0 2.5 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 EME69585.1 - 0.43 11.5 6.0 9.8 7.1 0.5 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 EME69585.1 - 1 9.9 9.4 10 6.7 9.3 2.4 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 EME69585.1 - 3.6 8.2 8.4 5.7 7.6 0.6 2.7 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_10 PF13237.6 EME69585.1 - 9 6.5 15.1 0.88 9.7 4.3 2.7 2 2 1 3 3 2 0 4Fe-4S dicluster domain TauD PF02668.16 EME69586.1 - 5.2e-14 52.7 0.0 6.5e-14 52.4 0.0 1.1 1 0 0 1 1 1 1 Taurine catabolism dioxygenase TauD, TfdA family CsiD PF08943.10 EME69586.1 - 0.13 11.4 0.0 0.77 8.8 0.0 1.8 2 0 0 2 2 2 0 CsiD zf-SCNM1 PF15803.5 EME69586.1 - 0.17 11.6 0.1 15 5.3 0.0 2.5 2 0 0 2 2 2 0 Zinc-finger of sodium channel modifier 1 Rhodanese PF00581.20 EME69588.1 - 3.6e-37 127.1 0.0 2.2e-18 66.7 0.0 2.0 2 0 0 2 2 2 2 Rhodanese-like domain PALP PF00291.25 EME69589.1 - 1.2e-68 231.8 1.5 1.4e-68 231.4 1.5 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Ald_Xan_dh_C2 PF02738.18 EME69590.1 - 4.4e-67 226.8 0.0 5.3e-24 84.6 0.0 3.8 3 1 0 3 3 3 3 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.22 EME69590.1 - 0.041 14.3 0.0 0.041 14.3 0.0 2.5 2 1 1 3 3 3 0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain FAD-SLDH PF12318.8 EME69590.1 - 0.15 12.1 0.1 0.26 11.3 0.1 1.4 1 0 0 1 1 1 0 Membrane bound FAD containing D-sorbitol dehydrogenase Fer2_2 PF01799.20 EME69591.1 - 1.9e-25 88.6 0.1 1.9e-25 88.6 0.1 1.5 2 0 0 2 2 2 1 [2Fe-2S] binding domain Fer2 PF00111.27 EME69591.1 - 3e-06 27.1 0.3 3e-06 27.1 0.3 2.1 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.6 EME69591.1 - 8.6e-06 25.7 0.8 8.6e-06 25.7 0.8 1.8 1 1 1 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.6 EME69591.1 - 0.002 18.1 0.6 0.019 15.0 0.7 2.2 2 1 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain DHODB_Fe-S_bind PF10418.9 EME69591.1 - 0.048 13.5 3.8 0.048 13.5 3.8 1.8 2 0 0 2 2 2 0 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Methyltransf_23 PF13489.6 EME69592.1 - 4.7e-15 55.8 0.0 6.9e-15 55.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 EME69592.1 - 1.3e-09 38.6 0.1 1.9e-09 38.1 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 EME69592.1 - 1.9e-09 38.1 0.0 2.8e-09 37.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 EME69592.1 - 5.1e-09 36.7 0.1 7.5e-09 36.1 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain DUF3419 PF11899.8 EME69592.1 - 0.00066 19.0 0.0 0.00082 18.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3419) Methyltransf_31 PF13847.6 EME69592.1 - 0.002 18.0 0.0 0.0027 17.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 EME69592.1 - 0.0021 17.4 0.0 0.0043 16.4 0.0 1.4 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_9 PF08003.11 EME69592.1 - 0.0023 16.9 0.0 0.0039 16.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) CheR PF01739.18 EME69592.1 - 0.034 13.6 0.1 0.13 11.7 0.0 1.8 2 0 0 2 2 2 0 CheR methyltransferase, SAM binding domain FtsJ PF01728.19 EME69592.1 - 0.088 12.9 0.0 0.11 12.6 0.0 1.2 1 0 0 1 1 1 0 FtsJ-like methyltransferase Methyltransf_24 PF13578.6 EME69592.1 - 0.094 13.7 0.1 0.15 13.1 0.1 1.3 1 0 0 1 1 1 0 Methyltransferase domain AdoMet_MTase PF07757.13 EME69592.1 - 0.18 12.1 0.0 0.28 11.5 0.0 1.3 1 0 0 1 1 1 0 Predicted AdoMet-dependent methyltransferase AAA_31 PF13614.6 EME69594.1 - 3.6e-20 72.6 0.1 1.2e-11 44.9 0.0 2.2 1 1 1 2 2 2 2 AAA domain CbiA PF01656.23 EME69594.1 - 3.8e-16 59.3 0.0 6e-16 58.7 0.0 1.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.11 EME69594.1 - 3.1e-15 56.2 0.3 4.3e-13 49.1 0.3 2.2 1 1 0 1 1 1 1 ATPase MipZ ParA PF10609.9 EME69594.1 - 5.4e-10 39.1 3.5 2.3e-09 37.1 0.1 2.6 1 1 1 2 2 2 1 NUBPL iron-transfer P-loop NTPase VirC1 PF07015.11 EME69594.1 - 5.1e-09 35.8 0.2 2.7e-08 33.4 0.2 1.9 1 1 0 1 1 1 1 VirC1 protein CBP_BcsQ PF06564.12 EME69594.1 - 1.2e-08 34.8 0.1 0.0003 20.3 0.0 2.2 1 1 1 2 2 2 2 Cellulose biosynthesis protein BcsQ ArsA_ATPase PF02374.15 EME69594.1 - 5.7e-06 25.7 0.1 1.3e-05 24.5 0.1 1.6 2 0 0 2 2 2 1 Anion-transporting ATPase MeaB PF03308.16 EME69594.1 - 0.00048 19.2 0.1 0.0011 18.0 0.1 1.6 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB Beta_elim_lyase PF01212.21 EME69594.1 - 0.0078 15.5 0.0 0.011 15.0 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Fer4_NifH PF00142.18 EME69594.1 - 0.012 15.1 0.1 0.1 12.0 0.0 2.0 2 0 0 2 2 2 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_25 PF13481.6 EME69594.1 - 0.014 15.0 0.2 0.039 13.5 0.1 1.9 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 EME69594.1 - 0.025 14.3 0.0 0.04 13.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain Methyltransf_24 PF13578.6 EME69594.1 - 0.034 15.2 0.0 0.062 14.3 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain SRP54 PF00448.22 EME69594.1 - 0.035 13.7 0.2 0.085 12.5 0.2 1.7 1 1 0 1 1 1 0 SRP54-type protein, GTPase domain MobB PF03205.14 EME69594.1 - 0.047 13.6 0.0 1.2 9.1 0.0 2.3 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B CLP1_P PF16575.5 EME69594.1 - 0.071 12.9 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop LpxK PF02606.14 EME69594.1 - 0.19 10.8 1.2 0.85 8.7 0.1 2.1 2 1 0 2 2 2 0 Tetraacyldisaccharide-1-P 4'-kinase CopD PF05425.13 EME69595.1 - 1.9e-06 28.2 2.5 1.9e-06 28.2 2.5 2.1 1 1 1 2 2 2 1 Copper resistance protein D DUF4149 PF13664.6 EME69595.1 - 0.38 11.1 12.8 0.039 14.3 7.9 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4149) NUDIX PF00293.28 EME69596.1 - 5.7e-13 49.1 0.1 8.6e-13 48.5 0.1 1.3 1 0 0 1 1 1 1 NUDIX domain RNase_T PF00929.24 EME69598.1 - 6.3e-19 69.1 0.0 8.2e-19 68.7 0.0 1.1 1 0 0 1 1 1 1 Exonuclease CSD PF00313.22 EME69599.1 - 1.7e-22 79.0 0.0 1.8e-22 78.9 0.0 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain OB_RNB PF08206.11 EME69599.1 - 0.00021 20.9 0.1 0.00034 20.2 0.1 1.3 1 0 0 1 1 1 1 Ribonuclease B OB domain Haem_degrading PF03928.14 EME69600.1 - 2.4e-28 98.6 3.1 2.6e-28 98.4 3.1 1.0 1 0 0 1 1 1 1 Haem-degrading Titin_Z PF09042.11 EME69600.1 - 0.18 11.8 4.3 4.3 7.4 1.2 2.6 2 0 0 2 2 2 0 Titin Z Chromate_transp PF02417.15 EME69601.1 - 2.4e-23 83.0 18.9 2.9e-23 82.8 18.9 1.0 1 0 0 1 1 1 1 Chromate transporter Chromate_transp PF02417.15 EME69602.1 - 1.4e-26 93.6 15.4 1.7e-26 93.3 15.4 1.0 1 0 0 1 1 1 1 Chromate transporter LysR_substrate PF03466.20 EME69603.1 - 9e-32 110.1 2.3 1.3e-31 109.6 2.3 1.3 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 EME69603.1 - 1.5e-23 82.5 5.7 2.9e-12 46.4 0.8 3.0 3 0 0 3 3 3 2 Bacterial regulatory helix-turn-helix protein, lysR family OpuAC PF04069.12 EME69603.1 - 0.064 12.8 0.0 0.099 12.2 0.0 1.2 1 0 0 1 1 1 0 Substrate binding domain of ABC-type glycine betaine transport system LigB PF02900.18 EME69604.1 - 2.8e-61 207.0 0.0 3.5e-61 206.7 0.0 1.1 1 0 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase LigA PF07746.11 EME69604.1 - 2.2e-33 114.3 0.1 5e-33 113.1 0.0 1.7 2 0 0 2 2 2 1 Aromatic-ring-opening dioxygenase LigAB, LigA subunit Frankia_peptide PF14407.6 EME69604.1 - 0.0036 17.2 0.1 0.012 15.5 0.0 1.9 2 0 0 2 2 2 1 Ribosomally synthesized peptide prototyped by Frankia Franean1_4349. GTP_EFTU PF00009.27 EME69605.1 - 3.7e-56 189.7 0.0 4.3e-56 189.6 0.0 1.0 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain MMR_HSR1 PF01926.23 EME69605.1 - 1.2e-05 25.3 0.0 2.3e-05 24.4 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase cobW PF02492.19 EME69605.1 - 0.018 14.7 0.0 0.036 13.6 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain RsgA_GTPase PF03193.16 EME69605.1 - 0.082 12.8 0.0 0.33 10.8 0.0 1.7 1 1 1 2 2 2 0 RsgA GTPase SpoU_methylase PF00588.19 EME69606.1 - 8.8e-38 129.7 0.0 1.5e-37 128.9 0.0 1.4 2 0 0 2 2 2 1 SpoU rRNA Methylase family SpoU_sub_bind PF08032.12 EME69606.1 - 2e-09 37.6 0.0 5.3e-09 36.2 0.0 1.8 1 1 0 1 1 1 1 RNA 2'-O ribose methyltransferase substrate binding MlaA PF04333.13 EME69608.1 - 1.6e-64 217.2 0.1 1.9e-64 217.0 0.1 1.1 1 0 0 1 1 1 1 MlaA lipoprotein HATPase_c PF02518.26 EME69609.1 - 4.1e-19 69.1 0.0 1.2e-18 67.6 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 EME69609.1 - 1.2e-18 67.3 1.3 2.6e-10 40.5 0.1 2.8 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 EME69609.1 - 8.1e-13 48.5 0.0 2.8e-05 24.3 0.0 3.8 2 2 1 3 3 3 2 PAS domain PAS PF00989.25 EME69609.1 - 4.4e-09 36.3 0.2 7.1e-05 22.8 0.1 3.1 2 1 0 2 2 2 2 PAS fold HisKA PF00512.25 EME69609.1 - 1.4e-08 34.6 0.7 2.5e-07 30.6 0.0 2.6 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.7 EME69609.1 - 7.9e-08 32.1 0.0 2.6e-07 30.5 0.0 1.9 1 0 0 1 1 1 1 PAS domain HATPase_c_2 PF13581.6 EME69609.1 - 0.0024 17.9 0.0 0.0053 16.7 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_3 PF08447.12 EME69609.1 - 0.11 12.8 0.0 10 6.5 0.0 3.1 3 0 0 3 3 3 0 PAS fold PAS_7 PF12860.7 EME69609.1 - 0.12 12.5 0.0 1.4 9.1 0.0 2.6 2 1 0 2 2 2 0 PAS fold CheB_methylest PF01339.17 EME69610.1 - 1.4e-53 181.1 0.0 2.5e-53 180.3 0.0 1.4 1 0 0 1 1 1 1 CheB methylesterase Response_reg PF00072.24 EME69610.1 - 6.3e-21 74.6 0.2 1.2e-20 73.7 0.0 1.5 2 0 0 2 2 2 1 Response regulator receiver domain LysR_substrate PF03466.20 EME69610.1 - 0.027 13.8 0.1 1.1 8.5 0.1 2.5 2 0 0 2 2 2 0 LysR substrate binding domain Response_reg PF00072.24 EME69611.1 - 1.2e-40 138.1 0.0 2.1e-21 76.2 0.0 2.3 2 0 0 2 2 2 2 Response regulator receiver domain HATPase_c PF02518.26 EME69611.1 - 2.5e-27 95.6 0.0 4.3e-27 94.9 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 EME69611.1 - 1.2e-18 66.9 1.4 1.5e-16 60.1 0.2 3.3 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain Hpt PF01627.23 EME69611.1 - 4.8e-08 33.2 5.4 6.9e-08 32.7 3.3 2.4 2 0 0 2 2 2 1 Hpt domain FleQ PF06490.11 EME69611.1 - 0.00043 20.6 0.0 0.15 12.5 0.0 2.6 2 1 0 2 2 2 2 Flagellar regulatory protein FleQ Response_reg PF00072.24 EME69612.1 - 6.2e-21 74.7 0.0 7.2e-21 74.5 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.26 EME69613.1 - 5.8e-23 81.5 0.0 1.2e-22 80.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.12 EME69613.1 - 8.6e-12 45.2 0.0 2.2e-11 43.9 0.0 1.7 1 0 0 1 1 1 1 PAS fold HisKA PF00512.25 EME69613.1 - 2.4e-10 40.3 1.5 8e-10 38.6 0.0 2.5 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.6 EME69613.1 - 0.0014 18.6 0.0 0.0052 16.7 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain PAS PF00989.25 EME69613.1 - 0.0034 17.4 0.0 0.0095 15.9 0.0 1.8 1 0 0 1 1 1 1 PAS fold HATPase_c_5 PF14501.6 EME69613.1 - 0.0091 15.9 0.0 0.017 15.0 0.0 1.4 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.6 EME69613.1 - 0.044 13.6 0.0 0.084 12.7 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF2755 PF10954.8 EME69613.1 - 0.12 12.3 0.4 4.3 7.3 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2755) NUDIX PF00293.28 EME69614.1 - 1.7e-19 70.1 0.3 1.9e-19 70.0 0.3 1.0 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.6 EME69614.1 - 0.00012 22.0 0.0 0.00023 21.1 0.0 1.4 1 1 0 1 1 1 1 NUDIX domain DEAD PF00270.29 EME69615.1 - 2.2e-47 161.1 0.1 7.4e-47 159.4 0.0 1.7 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 EME69615.1 - 3.8e-29 101.3 0.1 8.9e-29 100.1 0.1 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 EME69615.1 - 7.7e-05 22.8 0.0 0.00014 21.9 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit UTP25 PF06862.12 EME69615.1 - 0.0026 16.6 0.0 0.12 11.1 0.0 2.7 2 1 1 3 3 3 1 Utp25, U3 small nucleolar RNA-associated SSU processome protein 25 CMS1 PF14617.6 EME69615.1 - 0.024 14.0 0.1 0.053 12.9 0.0 1.6 2 0 0 2 2 2 0 U3-containing 90S pre-ribosomal complex subunit AAA_22 PF13401.6 EME69615.1 - 0.076 13.3 0.3 0.55 10.5 0.3 2.2 1 1 0 1 1 1 0 AAA domain SUa-2TM PF18179.1 EME69615.1 - 0.14 11.5 0.0 0.2 11.0 0.0 1.2 1 0 0 1 1 1 0 SMODS- and Ubiquitin system-associated 2TM effector domain CitMHS PF03600.16 EME69616.1 - 5e-39 134.3 45.5 1.2e-38 133.0 45.5 1.6 1 1 0 1 1 1 1 Citrate transporter TrkA_C PF02080.21 EME69616.1 - 7.6e-23 80.1 0.3 4.9e-10 39.1 0.1 2.4 2 0 0 2 2 2 2 TrkA-C domain Na_sulph_symp PF00939.19 EME69616.1 - 1.6e-17 63.7 31.6 4.5e-11 42.5 12.1 3.0 2 1 1 3 3 3 3 Sodium:sulfate symporter transmembrane region Fer2_BFD PF04324.15 EME69617.1 - 1.1e-11 44.9 0.1 1.1e-11 44.9 0.1 1.8 2 0 0 2 2 2 1 BFD-like [2Fe-2S] binding domain AMP-binding PF00501.28 EME69618.1 - 1.9e-88 296.9 0.0 2.4e-88 296.6 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 EME69618.1 - 1.6e-21 77.1 0.1 3.9e-21 75.8 0.1 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Lipase_GDSL_2 PF13472.6 EME69619.1 - 3e-06 27.7 0.4 6.7e-06 26.6 0.1 1.7 2 0 0 2 2 2 1 GDSL-like Lipase/Acylhydrolase family Lipase_GDSL PF00657.22 EME69619.1 - 0.023 14.7 0.0 2 8.3 0.0 2.3 2 0 0 2 2 2 0 GDSL-like Lipase/Acylhydrolase DUF1574 PF07611.11 EME69619.1 - 0.024 14.0 0.0 0.091 12.1 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1574) HIT PF01230.23 EME69620.1 - 2.1e-13 50.8 0.0 2.9e-13 50.4 0.0 1.1 1 0 0 1 1 1 1 HIT domain TGase_elicitor PF16683.5 EME69620.1 - 0.2 10.4 0.0 0.25 10.0 0.0 1.1 1 0 0 1 1 1 0 Transglutaminase elicitor DcpS_C PF11969.8 EME69620.1 - 0.21 12.1 0.1 0.41 11.1 0.1 1.4 1 1 0 1 1 1 0 Scavenger mRNA decapping enzyme C-term binding B12-binding PF02310.19 EME69621.1 - 2.3e-19 69.6 0.6 4.7e-19 68.6 0.6 1.5 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.17 EME69621.1 - 2.2e-13 50.5 0.9 5.2e-13 49.2 0.9 1.7 1 0 0 1 1 1 1 B12 binding domain URO-D PF01208.17 EME69622.1 - 3.2e-24 85.7 0.1 4.4e-22 78.7 0.0 2.1 2 0 0 2 2 2 2 Uroporphyrinogen decarboxylase (URO-D) MTHFR PF02219.17 EME69623.1 - 4.5e-33 114.8 0.0 5.7e-33 114.5 0.0 1.1 1 0 0 1 1 1 1 Methylenetetrahydrofolate reductase MTHFR_C PF12225.8 EME69623.1 - 2.8e-22 78.2 3.4 5.4e-22 77.3 3.4 1.4 1 0 0 1 1 1 1 Methylene-tetrahydrofolate reductase C terminal RACo_C_ter PF14574.6 EME69625.1 - 2.1e-74 249.9 0.0 3.1e-74 249.3 0.0 1.2 1 0 0 1 1 1 1 C-terminal domain of RACo the ASKHA domain Raco_middle PF17651.1 EME69625.1 - 2.1e-38 131.6 0.0 5.9e-38 130.1 0.0 1.7 2 0 0 2 2 2 1 RACo middle region Fer2 PF00111.27 EME69625.1 - 9.2e-09 35.1 0.1 2.8e-08 33.6 0.1 1.9 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain FGGY_N PF00370.21 EME69625.1 - 0.087 12.4 0.0 0.13 11.8 0.0 1.2 1 0 0 1 1 1 0 FGGY family of carbohydrate kinases, N-terminal domain Fer2_4 PF13510.6 EME69625.1 - 0.15 12.1 0.6 1.2 9.2 0.1 2.8 2 1 0 2 2 2 0 2Fe-2S iron-sulfur cluster binding domain Pterin_bind PF00809.22 EME69626.1 - 6.7e-12 45.6 0.3 8.8e-12 45.2 0.3 1.1 1 0 0 1 1 1 1 Pterin binding enzyme Amidohydro_1 PF01979.20 EME69627.1 - 3.4e-14 52.9 0.0 4.3e-14 52.6 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 EME69627.1 - 0.00093 18.8 5.3 0.015 14.8 1.3 2.3 1 1 1 2 2 2 2 Amidohydrolase family THF_DHG_CYH_C PF02882.19 EME69628.1 - 6.9e-60 201.0 2.7 1e-59 200.4 2.7 1.3 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THF_DHG_CYH PF00763.23 EME69628.1 - 1.2e-27 96.4 0.0 2e-27 95.8 0.0 1.3 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain FolB PF02152.18 EME69628.1 - 7e-20 71.6 0.0 1.6e-19 70.4 0.0 1.7 1 0 0 1 1 1 1 Dihydroneopterin aldolase MarR_2 PF12802.7 EME69628.1 - 0.25 11.3 3.4 1.9 8.4 0.3 3.2 3 0 0 3 3 3 0 MarR family Peripla_BP_6 PF13458.6 EME69629.1 - 8.2e-60 203.3 0.0 9.2e-60 203.1 0.0 1.0 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 EME69629.1 - 3.8e-20 72.2 0.0 7.3e-16 58.1 0.0 2.0 2 0 0 2 2 2 2 Periplasmic binding protein domain ANF_receptor PF01094.28 EME69629.1 - 4.7e-18 65.4 0.0 5.7e-18 65.1 0.0 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region Prok-JAB PF14464.6 EME69632.1 - 3e-23 81.8 0.3 3.6e-23 81.6 0.3 1.1 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain JAB PF01398.21 EME69632.1 - 0.00072 19.5 0.0 0.0013 18.7 0.0 1.4 1 1 0 1 1 1 1 JAB1/Mov34/MPN/PAD-1 ubiquitin protease DUF4307 PF14155.6 EME69633.1 - 0.14 12.0 0.6 4.2 7.3 0.1 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4307) PseudoU_synth_2 PF00849.22 EME69634.1 - 2.5e-37 128.4 0.0 3.2e-37 128.1 0.0 1.1 1 0 0 1 1 1 1 RNA pseudouridylate synthase S4 PF01479.25 EME69634.1 - 1.3e-08 34.4 0.0 2.8e-08 33.3 0.0 1.6 1 0 0 1 1 1 1 S4 domain MazE_antitoxin PF04014.18 EME69634.1 - 0.5 10.4 1.9 0.71 9.9 0.1 2.2 3 0 0 3 3 3 0 Antidote-toxin recognition MazE, bacterial antitoxin Sigma70_r2 PF04542.14 EME69635.1 - 9.8e-18 63.7 0.2 3.3e-16 58.8 0.0 2.4 2 0 0 2 2 2 1 Sigma-70 region 2 Sigma70_r4 PF04545.16 EME69635.1 - 4.5e-17 61.3 2.8 4.5e-17 61.3 2.8 2.7 3 0 0 3 3 3 1 Sigma-70, region 4 Sigma70_r1_2 PF00140.20 EME69635.1 - 2.7e-07 30.5 0.1 2.7e-07 30.5 0.1 2.4 3 0 0 3 3 3 1 Sigma-70 factor, region 1.2 Sigma70_r3 PF04539.16 EME69635.1 - 0.00075 19.6 3.2 0.014 15.5 0.6 2.4 2 0 0 2 2 2 1 Sigma-70 region 3 HTH_19 PF12844.7 EME69635.1 - 0.0016 18.4 0.1 0.34 11.0 0.0 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_3 PF01381.22 EME69635.1 - 0.0041 17.2 0.2 1.5 9.0 0.1 2.5 2 0 0 2 2 2 2 Helix-turn-helix LysM PF01476.20 EME69635.1 - 0.0054 16.8 0.0 1.9 8.6 0.0 3.0 3 0 0 3 3 3 1 LysM domain UCR_14kD PF02271.16 EME69635.1 - 0.019 14.9 0.0 0.046 13.7 0.0 1.7 1 0 0 1 1 1 0 Ubiquinol-cytochrome C reductase complex 14kD subunit HTH_11 PF08279.12 EME69635.1 - 0.021 14.7 0.8 0.086 12.8 0.5 2.1 2 0 0 2 2 2 0 HTH domain HTH_25 PF13413.6 EME69635.1 - 0.025 14.4 0.2 0.46 10.4 0.1 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.6 EME69635.1 - 0.082 12.7 0.7 0.69 9.8 0.4 2.5 3 0 0 3 3 3 0 Homeodomain-like domain Pkinase PF00069.25 EME69637.1 - 2.3e-05 23.9 0.0 0.00011 21.6 0.0 2.0 1 1 0 1 1 1 1 Protein kinase domain GD_AH_C PF04295.13 EME69637.1 - 0.16 10.8 0.3 0.27 10.0 0.3 1.2 1 0 0 1 1 1 0 D-galactarate dehydratase / Altronate hydrolase, C terminus Adenylsucc_synt PF00709.21 EME69638.1 - 2.7e-173 576.7 0.0 3e-173 576.6 0.0 1.0 1 0 0 1 1 1 1 Adenylosuccinate synthetase tRNA-synt_His PF13393.6 EME69639.1 - 2.7e-84 283.1 0.2 3.1e-84 282.9 0.2 1.0 1 0 0 1 1 1 1 Histidyl-tRNA synthetase MCPsignal PF00015.21 EME69640.1 - 2.1e-37 128.6 26.3 2.1e-37 128.6 26.3 3.2 1 1 2 3 3 3 1 Methyl-accepting chemotaxis protein (MCP) signalling domain CZB PF13682.6 EME69640.1 - 3.9e-11 43.2 0.2 7.1e-11 42.4 0.2 1.5 1 0 0 1 1 1 1 Chemoreceptor zinc-binding domain NPV_P10 PF05531.12 EME69640.1 - 0.0046 17.4 10.2 7.1 7.2 0.8 4.7 3 2 1 4 4 4 2 Nucleopolyhedrovirus P10 protein BLOC1_2 PF10046.9 EME69640.1 - 0.012 15.8 4.1 5.5 7.4 0.1 4.1 3 1 1 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF1664 PF07889.12 EME69640.1 - 0.076 13.0 10.8 1.6 8.8 0.7 4.1 2 2 3 5 5 5 0 Protein of unknown function (DUF1664) APG17 PF04108.12 EME69640.1 - 0.14 11.2 4.3 1.6 7.8 3.9 2.2 1 1 1 2 2 2 0 Autophagy protein Apg17 DUF948 PF06103.11 EME69640.1 - 0.18 12.1 18.3 3.8 7.8 0.7 4.7 1 1 4 5 5 5 0 Bacterial protein of unknown function (DUF948) HTH_23 PF13384.6 EME69640.1 - 0.31 10.9 2.3 0.54 10.1 0.6 2.4 2 0 0 2 2 2 0 Homeodomain-like domain FSA_C PF10479.9 EME69640.1 - 2.2 6.3 14.1 0.01 14.0 1.4 2.0 2 0 0 2 2 2 0 Fragile site-associated protein C-terminus Laminin_II PF06009.12 EME69640.1 - 2.5 8.1 17.7 0.91 9.5 2.5 2.8 2 1 0 2 2 2 0 Laminin Domain II 2-Hacid_dh_C PF02826.19 EME69641.1 - 1.8e-63 213.1 0.0 3.1e-63 212.3 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 EME69641.1 - 2.3e-38 130.9 2.3 2.1e-37 127.8 0.6 2.7 3 0 0 3 3 3 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ACT PF01842.25 EME69641.1 - 1.6e-08 34.2 0.0 4.5e-08 32.7 0.0 1.8 1 0 0 1 1 1 1 ACT domain AdoHcyase_NAD PF00670.21 EME69641.1 - 0.00025 21.1 0.1 0.00058 20.0 0.1 1.5 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain IlvN PF07991.12 EME69641.1 - 0.00026 20.6 0.0 0.00061 19.4 0.0 1.6 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain HutP PF09021.11 EME69641.1 - 0.013 15.8 0.4 0.073 13.4 0.0 2.4 3 0 0 3 3 3 0 HutP TMP-TENI PF02581.17 EME69641.1 - 0.068 12.5 2.2 0.41 10.0 0.0 2.8 3 0 0 3 3 3 0 Thiamine monophosphate synthase EAP30 PF04157.16 EME69641.1 - 0.13 11.5 0.0 0.23 10.7 0.0 1.4 1 0 0 1 1 1 0 EAP30/Vps36 family Aminotran_5 PF00266.19 EME69642.1 - 1.3e-05 24.3 0.0 2.1e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Amidase02_C PF12123.8 EME69642.1 - 0.19 11.5 0.8 1.1 9.0 0.2 2.4 2 0 0 2 2 2 0 N-acetylmuramoyl-l-alanine amidase CxxCxxCC PF03692.15 EME69643.1 - 3.3e-06 27.7 0.9 5.1e-06 27.1 0.9 1.3 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain Phos_pyr_kin PF08543.12 EME69644.1 - 1.1e-88 296.8 0.8 1.3e-88 296.6 0.8 1.0 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase PfkB PF00294.24 EME69644.1 - 7.5e-08 32.0 0.2 1.3e-07 31.3 0.1 1.4 1 1 0 1 1 1 1 pfkB family carbohydrate kinase HK PF02110.15 EME69644.1 - 2.2 7.6 7.6 4.9 6.5 0.1 2.4 3 0 0 3 3 3 0 Hydroxyethylthiazole kinase family DUF4253 PF14062.6 EME69645.1 - 0.0022 18.1 0.1 0.0024 18.0 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4253) TPR_14 PF13428.6 EME69645.1 - 0.021 15.6 0.4 0.044 14.6 0.2 1.7 1 1 0 1 1 1 0 Tetratricopeptide repeat TPR_6 PF13174.6 EME69645.1 - 0.093 13.4 0.0 0.68 10.7 0.0 2.2 2 1 0 2 2 2 0 Tetratricopeptide repeat Cas3_C PF18395.1 EME69645.1 - 0.12 12.8 0.1 0.14 12.7 0.1 1.1 1 0 0 1 1 1 0 Cas3 C-terminal domain PGM_PMM_I PF02878.16 EME69646.1 - 8.5e-43 145.4 0.0 2e-42 144.2 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_III PF02880.16 EME69646.1 - 9e-34 116.1 0.0 1.6e-33 115.3 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_II PF02879.16 EME69646.1 - 3e-17 63.1 0.0 7e-17 61.9 0.0 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.20 EME69646.1 - 2.4e-12 46.8 2.4 4.4e-12 46.0 1.8 1.8 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain DUF4405 PF14358.6 EME69647.1 - 3e-08 34.1 3.6 3e-08 34.1 3.6 1.6 2 0 0 2 2 2 1 Domain of unknown function (DUF4405) HTH_AsnC-type PF13404.6 EME69647.1 - 0.0066 16.3 1.2 0.013 15.3 1.2 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain SLAC1 PF03595.17 EME69647.1 - 0.013 14.7 0.6 0.019 14.3 0.6 1.2 1 0 0 1 1 1 0 Voltage-dependent anion channel AC_N PF16214.5 EME69647.1 - 0.016 14.3 0.4 0.021 14.0 0.4 1.1 1 0 0 1 1 1 0 Adenylyl cyclase N-terminal extracellular and transmembrane region Ferric_reduct PF01794.19 EME69647.1 - 0.065 13.4 5.4 0.12 12.5 5.4 1.5 1 1 0 1 1 1 0 Ferric reductase like transmembrane component Ni_hydr_CYTB PF01292.20 EME69647.1 - 1 8.9 10.1 0.44 10.1 7.1 1.7 1 1 0 1 1 1 0 Prokaryotic cytochrome b561 PepSY_TM PF03929.16 EME69647.1 - 4.2 6.9 6.9 65 3.1 6.9 2.5 1 1 0 1 1 1 0 PepSY-associated TM region Pterin_bind PF00809.22 EME69648.1 - 1.7e-72 244.0 0.0 2.1e-72 243.7 0.0 1.1 1 0 0 1 1 1 1 Pterin binding enzyme Response_reg PF00072.24 EME69649.1 - 3.6e-23 81.9 0.0 5.4e-23 81.3 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain GerE PF00196.19 EME69649.1 - 1.2e-17 63.2 0.8 1.7e-17 62.7 0.8 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 EME69649.1 - 0.0001 21.9 0.7 0.00021 20.9 0.7 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 FleQ PF06490.11 EME69649.1 - 0.0016 18.8 0.0 0.0022 18.3 0.0 1.2 1 0 0 1 1 1 1 Flagellar regulatory protein FleQ HATPase_c PF02518.26 EME69650.1 - 1.6e-20 73.7 0.0 2.9e-20 72.8 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MASE1 PF05231.14 EME69650.1 - 1.2e-13 51.0 31.8 1.7e-13 50.4 31.8 1.2 1 0 0 1 1 1 1 MASE1 HATPase_c_5 PF14501.6 EME69650.1 - 0.0011 18.9 0.0 0.0016 18.3 0.0 1.2 1 0 0 1 1 1 1 GHKL domain HisKA PF00512.25 EME69650.1 - 0.0014 18.6 0.1 0.0027 17.7 0.1 1.5 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.6 EME69650.1 - 0.0021 17.9 0.0 0.0035 17.2 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ELFV_dehydrog PF00208.21 EME69651.1 - 8.5e-67 225.4 0.0 1.5e-66 224.6 0.0 1.4 2 0 0 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 EME69651.1 - 3.2e-49 166.1 0.0 5e-49 165.5 0.0 1.3 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.19 EME69651.1 - 0.0046 16.3 0.0 0.0086 15.5 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.18 EME69651.1 - 0.026 14.8 1.1 0.05 13.9 0.1 2.0 2 1 0 2 2 2 0 TrkA-N domain Glyco_hydro_42 PF02449.15 EME69651.1 - 0.071 12.4 0.0 0.11 11.9 0.0 1.2 1 0 0 1 1 1 0 Beta-galactosidase Pyr_redox_2 PF07992.14 EME69651.1 - 0.074 12.3 0.1 0.11 11.8 0.1 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase PTAC PF06130.12 EME69651.1 - 0.17 12.0 0.0 7.2 6.8 0.0 2.4 2 0 0 2 2 2 0 Phosphate propanoyltransferase EAL PF00563.20 EME69652.1 - 9.2e-72 241.4 0.0 1.9e-71 240.4 0.0 1.6 1 0 0 1 1 1 1 EAL domain dCache_2 PF08269.11 EME69652.1 - 2.9e-69 233.5 0.0 6.4e-69 232.4 0.0 1.6 2 0 0 2 2 2 1 Cache domain GGDEF PF00990.21 EME69652.1 - 7.4e-48 162.3 0.0 1.6e-47 161.3 0.0 1.6 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain sCache_2 PF17200.4 EME69652.1 - 3.2e-43 147.3 0.0 9.1e-25 87.3 0.0 2.3 1 1 1 2 2 2 2 Single Cache domain 2 PAS_4 PF08448.10 EME69652.1 - 7.5e-32 109.9 0.4 1.1e-14 54.6 0.0 3.0 2 0 0 2 2 2 2 PAS fold PAS PF00989.25 EME69652.1 - 4e-27 94.5 0.1 2e-14 53.5 0.0 3.0 3 0 0 3 3 3 2 PAS fold PAS_9 PF13426.7 EME69652.1 - 1.7e-23 82.9 0.0 1.5e-12 47.7 0.0 2.9 2 0 0 2 2 2 2 PAS domain PAS_3 PF08447.12 EME69652.1 - 1e-18 67.4 0.0 3e-10 40.2 0.0 2.7 2 0 0 2 2 2 2 PAS fold Cache_3-Cache_2 PF17201.4 EME69652.1 - 6.2e-16 58.5 0.0 1.8e-09 37.3 0.0 2.9 2 1 1 3 3 3 2 Cache 3/Cache 2 fusion domain PAS_8 PF13188.7 EME69652.1 - 6.8e-08 32.4 0.0 1.9e-05 24.6 0.0 3.7 3 0 0 3 3 3 1 PAS domain PAS_7 PF12860.7 EME69652.1 - 0.00039 20.5 0.5 0.0041 17.3 0.0 3.0 3 1 0 3 3 2 1 PAS fold PAS_11 PF14598.6 EME69652.1 - 0.0057 16.8 0.0 0.39 10.9 0.0 2.5 2 0 0 2 2 2 1 PAS domain PAS_10 PF13596.6 EME69652.1 - 0.16 12.6 0.0 2.4 8.8 0.0 2.6 2 0 0 2 2 2 0 PAS domain 3HCDH_N PF02737.18 EME69653.1 - 7e-60 202.0 0.1 7e-60 202.0 0.1 1.9 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ECH_1 PF00378.20 EME69653.1 - 8.2e-37 126.9 2.2 1.3e-36 126.2 1.1 1.9 2 0 0 2 2 2 1 Enoyl-CoA hydratase/isomerase 3HCDH PF00725.22 EME69653.1 - 8.2e-30 103.3 0.1 3e-16 59.8 0.1 3.4 4 0 0 4 4 4 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ECH_2 PF16113.5 EME69653.1 - 4.1e-19 69.3 0.5 7.5e-19 68.4 0.5 1.4 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase UDPG_MGDP_dh_N PF03721.14 EME69653.1 - 0.00073 19.2 0.1 0.0017 18.0 0.1 1.7 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox_2 PF07992.14 EME69653.1 - 0.0058 15.9 0.1 0.0093 15.2 0.1 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 EME69653.1 - 0.0064 17.0 0.3 0.022 15.3 0.3 2.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase 2-Hacid_dh_C PF02826.19 EME69653.1 - 0.0085 15.5 0.1 0.017 14.5 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 EME69653.1 - 0.014 15.5 1.0 0.027 14.6 0.1 2.0 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase Peptidase_S49 PF01343.18 EME69653.1 - 0.12 12.3 3.1 3 7.8 0.0 3.2 3 1 1 4 4 4 0 Peptidase family S49 F420_oxidored PF03807.17 EME69653.1 - 3.1 8.4 7.0 0.64 10.6 1.9 2.6 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Thiolase_C PF02803.18 EME69654.1 - 6.7e-19 67.7 2.0 7.8e-19 67.5 0.1 2.0 2 0 0 2 2 2 1 Thiolase, C-terminal domain Thiolase_N PF00108.23 EME69654.1 - 3.9e-18 65.7 0.0 6.2e-18 65.1 0.0 1.2 1 0 0 1 1 1 1 Thiolase, N-terminal domain MarR PF01047.22 EME69655.1 - 2.9e-11 43.1 0.0 6.2e-11 42.1 0.0 1.6 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 EME69655.1 - 3.8e-10 39.5 0.1 7.4e-10 38.6 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 EME69655.1 - 4.8e-05 23.8 0.0 0.0001 22.7 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.6 EME69655.1 - 0.059 12.9 0.0 0.11 12.0 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_36 PF13730.6 EME69655.1 - 0.14 12.1 0.0 0.59 10.1 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain DUF2189 PF09955.9 EME69656.1 - 7.6e-36 123.1 7.4 7.6e-36 123.1 7.4 2.4 3 0 0 3 3 3 1 Predicted integral membrane protein (DUF2189) FAD-oxidase_C PF02913.19 EME69658.1 - 7.2e-68 228.9 0.2 7.2e-68 228.9 0.2 1.7 2 0 0 2 2 2 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 EME69658.1 - 7e-40 136.0 0.8 7e-40 136.0 0.8 1.8 2 0 0 2 2 2 1 FAD binding domain Peripla_BP_4 PF13407.6 EME69658.1 - 0.19 11.3 0.1 0.4 10.2 0.1 1.5 1 0 0 1 1 1 0 Periplasmic binding protein domain MFS_1 PF07690.16 EME69659.1 - 1.5e-37 129.4 55.8 2.4e-34 118.8 41.0 2.0 2 0 0 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 EME69659.1 - 0.00011 21.3 11.4 0.00011 21.3 11.4 2.4 2 0 0 2 2 2 1 Sugar (and other) transporter MFS_4 PF06779.14 EME69659.1 - 0.00025 20.5 34.9 0.00035 20.0 34.9 1.1 1 0 0 1 1 1 1 Uncharacterised MFS-type transporter YbfB Lipase PF00151.19 EME69661.1 - 0.03 13.6 0.0 0.038 13.3 0.0 1.0 1 0 0 1 1 1 0 Lipase DUF326 PF03860.16 EME69661.1 - 0.65 10.0 27.6 0.15 12.1 8.4 4.2 5 0 0 5 5 5 0 Domain of Unknown Function (DUF326) NPP PF08384.10 EME69661.1 - 2.1 8.5 7.7 1.2 9.2 5.1 2.1 2 0 0 2 2 2 0 Pro-opiomelanocortin, N-terminal region Peripla_BP_6 PF13458.6 EME69662.1 - 1.2e-60 206.0 10.7 1.5e-60 205.7 10.7 1.0 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.28 EME69662.1 - 4.3e-30 105.0 0.0 5.3e-30 104.7 0.0 1.0 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.6 EME69662.1 - 1.1e-21 77.2 0.1 1.6e-21 76.7 0.1 1.2 1 0 0 1 1 1 1 Periplasmic binding protein domain RL10P_insert PF17777.1 EME69662.1 - 0.13 12.3 0.0 13 5.9 0.0 2.5 2 0 0 2 2 2 0 Insertion domain in 60S ribosomal protein L10P ETRAMP PF09716.10 EME69663.1 - 0.33 11.0 2.8 0.41 10.7 2.8 1.2 1 0 0 1 1 1 0 Malarial early transcribed membrane protein (ETRAMP) DUF1180 PF06679.12 EME69663.1 - 2.2 8.7 6.4 2.7 8.4 6.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1180) Med3 PF11593.8 EME69663.1 - 5.7 6.0 13.6 6.6 5.8 13.6 1.0 1 0 0 1 1 1 0 Mediator complex subunit 3 fungal SRP-alpha_N PF04086.13 EME69663.1 - 5.8 6.7 11.2 8.9 6.1 11.2 1.2 1 0 0 1 1 1 0 Signal recognition particle, alpha subunit, N-terminal EAL PF00563.20 EME69664.1 - 1.7e-72 243.8 0.0 5.3e-72 242.2 0.0 1.9 2 0 0 2 2 2 1 EAL domain GGDEF PF00990.21 EME69664.1 - 3.1e-55 186.3 0.1 1.3e-54 184.3 0.1 2.0 2 0 0 2 2 2 1 Diguanylate cyclase, GGDEF domain PAS_9 PF13426.7 EME69664.1 - 1.2e-28 99.4 0.1 1e-14 54.6 0.0 3.0 4 0 0 4 4 3 2 PAS domain PAS PF00989.25 EME69664.1 - 2e-25 89.0 0.0 2.6e-12 46.8 0.0 2.5 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.7 EME69664.1 - 1.2e-21 76.3 0.0 3.2e-09 36.6 0.0 3.5 3 0 0 3 3 3 2 PAS domain PAS_3 PF08447.12 EME69664.1 - 1.4e-21 76.6 0.1 3.1e-13 49.8 0.0 2.6 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.10 EME69664.1 - 4.7e-21 75.1 0.7 4.4e-09 36.6 0.2 3.4 3 0 0 3 3 3 2 PAS fold Response_reg PF00072.24 EME69664.1 - 1.5e-18 67.0 0.0 3.2e-18 65.9 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain PAS_7 PF12860.7 EME69664.1 - 9.4e-08 32.2 0.1 0.011 15.9 0.0 3.8 2 2 0 2 2 2 2 PAS fold TadZ_N PF16968.5 EME69664.1 - 0.02 14.6 0.9 0.06 13.0 0.3 2.2 2 0 0 2 2 2 0 Pilus assembly protein TadZ N-terminal PAS_11 PF14598.6 EME69664.1 - 0.062 13.4 0.0 0.53 10.4 0.0 2.3 2 0 0 2 2 2 0 PAS domain Response_reg PF00072.24 EME69665.1 - 4.8e-18 65.4 0.0 5.7e-18 65.1 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain Sod_Cu PF00080.20 EME69666.1 - 5.6e-30 104.4 1.0 6.5e-30 104.2 1.0 1.1 1 0 0 1 1 1 1 Copper/zinc superoxide dismutase (SODC) Hydantoinase_A PF01968.18 EME69666.1 - 0.055 12.7 0.1 0.08 12.2 0.1 1.3 1 0 0 1 1 1 0 Hydantoinase/oxoprolinase cNMP_binding PF00027.29 EME69667.1 - 3.2e-17 62.4 0.0 5.4e-17 61.7 0.0 1.4 1 0 0 1 1 1 1 Cyclic nucleotide-binding domain HTH_Crp_2 PF13545.6 EME69667.1 - 3.7e-14 52.5 0.2 8.9e-14 51.2 0.0 1.8 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain MarR_2 PF12802.7 EME69667.1 - 0.09 12.7 0.4 0.26 11.2 0.1 1.9 2 0 0 2 2 2 0 MarR family ROK PF00480.20 EME69668.1 - 5.9e-74 249.2 0.0 6.7e-74 249.0 0.0 1.0 1 0 0 1 1 1 1 ROK family Glucokinase PF02685.16 EME69668.1 - 2e-05 23.8 0.1 0.00011 21.3 0.1 2.1 1 1 0 1 1 1 1 Glucokinase BcrAD_BadFG PF01869.20 EME69668.1 - 0.0011 18.5 0.0 0.029 13.9 0.1 2.3 2 1 0 2 2 2 1 BadF/BadG/BcrA/BcrD ATPase family Hydant_A_N PF05378.13 EME69668.1 - 0.0041 16.9 0.2 0.0065 16.2 0.2 1.3 1 0 0 1 1 1 1 Hydantoinase/oxoprolinase N-terminal region DUF1974 PF09317.11 EME69668.1 - 0.13 11.8 0.0 0.19 11.3 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1974) CitMHS PF03600.16 EME69669.1 - 0.00022 20.5 30.3 0.0064 15.7 30.4 2.9 1 1 0 1 1 1 1 Citrate transporter COX4 PF02936.14 EME69669.1 - 0.41 10.7 0.9 13 5.8 0.0 3.1 3 1 1 4 4 4 0 Cytochrome c oxidase subunit IV TylF PF05711.11 EME69670.1 - 1.5e-09 37.5 0.0 1.5e-06 27.7 0.0 2.2 2 0 0 2 2 2 2 Macrocin-O-methyltransferase (TylF) Methyltransf_24 PF13578.6 EME69670.1 - 1.7e-07 32.2 0.0 4.7e-07 30.8 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain TPR_6 PF13174.6 EME69670.1 - 0.13 12.9 0.2 0.13 12.9 0.2 2.6 2 1 0 2 2 2 0 Tetratricopeptide repeat Ribonuc_L-PSP PF01042.21 EME69671.1 - 7.4e-16 58.3 0.0 9.2e-16 58.0 0.0 1.1 1 0 0 1 1 1 1 Endoribonuclease L-PSP Peripla_BP_6 PF13458.6 EME69672.1 - 1.2e-56 192.9 0.3 1.3e-56 192.7 0.3 1.0 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 EME69672.1 - 7.6e-17 61.3 0.1 2.6e-16 59.6 0.1 1.7 1 1 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.28 EME69672.1 - 5.4e-12 45.5 0.0 6.1e-12 45.3 0.0 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region IPT PF01745.16 EME69672.1 - 0.0015 18.0 0.1 0.047 13.1 0.0 2.2 2 0 0 2 2 2 1 Isopentenyl transferase adh_short_C2 PF13561.6 EME69673.1 - 6.7e-55 186.2 2.6 4.7e-53 180.2 2.6 2.0 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 EME69673.1 - 4.1e-50 170.0 1.0 5.3e-50 169.6 1.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 EME69673.1 - 1.6e-12 47.7 0.8 1.2e-11 44.9 0.8 2.0 1 1 0 1 1 1 1 KR domain 3HCDH_N PF02737.18 EME69673.1 - 0.07 13.0 0.6 0.14 12.1 0.6 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 EME69673.1 - 0.091 13.0 0.1 0.13 12.5 0.1 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain CoA_transf_3 PF02515.17 EME69674.1 - 9.6e-71 238.8 0.0 1.2e-70 238.5 0.0 1.0 1 0 0 1 1 1 1 CoA-transferase family III Peripla_BP_2 PF01497.18 EME69674.1 - 0.077 12.6 0.0 1.2 8.6 0.0 2.1 2 0 0 2 2 2 0 Periplasmic binding protein Ald_Xan_dh_C2 PF02738.18 EME69675.1 - 2.3e-160 534.7 0.9 2.9e-160 534.4 0.9 1.1 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.22 EME69675.1 - 2.2e-27 95.6 0.1 5.8e-27 94.2 0.0 1.8 2 0 0 2 2 2 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Fer2_2 PF01799.20 EME69676.1 - 6.7e-27 93.3 0.0 6.7e-27 93.3 0.0 1.5 2 0 0 2 2 2 1 [2Fe-2S] binding domain Fer2 PF00111.27 EME69676.1 - 5.6e-07 29.4 0.7 5.6e-07 29.4 0.7 2.2 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.6 EME69676.1 - 0.00021 21.2 0.4 0.00054 20.0 0.1 1.7 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain FAD_binding_5 PF00941.21 EME69677.1 - 5.3e-52 176.0 0.1 7.2e-52 175.6 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain in molybdopterin dehydrogenase CO_deh_flav_C PF03450.17 EME69677.1 - 2.5e-24 85.4 0.1 5.8e-24 84.2 0.1 1.6 1 0 0 1 1 1 1 CO dehydrogenase flavoprotein C-terminal domain MM_CoA_mutase PF01642.22 EME69678.1 - 3.3e-189 629.7 0.8 3.8e-189 629.5 0.8 1.0 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase B12-binding PF02310.19 EME69679.1 - 5.4e-16 58.7 0.0 6.3e-16 58.5 0.0 1.1 1 0 0 1 1 1 1 B12 binding domain PGM_PMM_I PF02878.16 EME69679.1 - 0.013 15.2 0.0 0.018 14.8 0.0 1.3 1 0 0 1 1 1 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Acyl-CoA_dh_1 PF00441.24 EME69680.1 - 7e-42 143.2 5.5 7e-42 143.2 5.5 1.7 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 EME69680.1 - 1.1e-26 92.8 0.1 2.1e-26 91.9 0.1 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_N PF02771.16 EME69680.1 - 4.9e-25 88.4 1.1 1.2e-24 87.2 0.1 2.1 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.11 EME69680.1 - 3.2e-21 76.0 9.8 3.2e-21 76.0 9.8 2.0 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Hydantoinase_B PF02538.14 EME69681.1 - 1.2e-137 459.5 0.0 1.3e-137 459.3 0.0 1.0 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase Hydantoinase_A PF01968.18 EME69682.1 - 2.7e-88 296.0 1.6 2.9e-87 292.6 0.1 2.2 2 0 0 2 2 2 2 Hydantoinase/oxoprolinase Hydant_A_N PF05378.13 EME69682.1 - 7.7e-47 159.3 0.1 1.3e-46 158.6 0.1 1.4 1 0 0 1 1 1 1 Hydantoinase/oxoprolinase N-terminal region AMP-binding PF00501.28 EME69683.1 - 3.3e-88 296.1 0.0 4e-88 295.8 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 EME69683.1 - 1.7e-19 70.6 0.2 3.2e-19 69.7 0.2 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Thiolase_N PF00108.23 EME69684.1 - 4.5e-19 68.8 0.0 1.6e-18 67.0 0.0 1.7 1 1 1 2 2 2 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 EME69684.1 - 1.6e-17 63.3 2.2 7e-16 58.0 0.1 2.3 2 0 0 2 2 2 2 Thiolase, C-terminal domain AAA_3 PF07726.11 EME69684.1 - 0.16 11.8 0.0 0.42 10.5 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) MaoC_dehydratas PF01575.19 EME69685.1 - 1.3e-25 89.4 0.0 1.5e-25 89.1 0.0 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 EME69685.1 - 5.4e-07 29.8 0.0 1.2e-05 25.5 0.0 2.1 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase MaoC_dehydrat_N PF13452.6 EME69686.1 - 1e-39 135.7 0.0 1.1e-39 135.5 0.0 1.0 1 0 0 1 1 1 1 N-terminal half of MaoC dehydratase MaoC_dehydratas PF01575.19 EME69686.1 - 0.0018 17.8 0.0 0.0046 16.5 0.0 1.6 1 1 0 1 1 1 1 MaoC like domain CDC48_2 PF02933.17 EME69686.1 - 0.049 13.4 0.1 0.081 12.7 0.1 1.3 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), domain 2 TetR_C_24 PF17932.1 EME69687.1 - 2.5e-23 82.5 0.0 3.4e-23 82.1 0.0 1.2 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_N PF00440.23 EME69687.1 - 8e-13 48.0 0.1 1.3e-12 47.3 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_4 PF08359.11 EME69687.1 - 1.8e-05 24.9 0.0 2.5e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 YsiA-like protein, C-terminal region TetR_C_29 PF17938.1 EME69687.1 - 0.0019 18.3 0.0 0.003 17.6 0.0 1.3 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain GCV_T PF01571.21 EME69687.1 - 0.042 13.2 0.0 0.12 11.7 0.0 1.7 1 1 0 1 1 1 0 Aminomethyltransferase folate-binding domain TetR_C_11 PF16859.5 EME69687.1 - 0.046 14.0 0.0 0.098 13.0 0.0 1.5 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain Oxidored_FMN PF00724.20 EME69688.1 - 1.6e-70 238.1 0.0 2.2e-70 237.7 0.0 1.1 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family FAD_binding_3 PF01494.19 EME69688.1 - 3.1e-13 49.7 0.0 1e-11 44.7 0.0 2.3 1 1 1 2 2 2 1 FAD binding domain Lycopene_cycl PF05834.12 EME69688.1 - 0.0023 17.0 0.0 0.0041 16.2 0.0 1.4 1 0 0 1 1 1 1 Lycopene cyclase protein K_oxygenase PF13434.6 EME69688.1 - 0.003 16.8 0.0 0.0044 16.2 0.0 1.2 1 0 0 1 1 1 1 L-lysine 6-monooxygenase (NADPH-requiring) DAO PF01266.24 EME69688.1 - 0.017 14.7 0.1 0.35 10.4 0.0 3.0 2 1 2 4 4 4 0 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 EME69688.1 - 0.076 13.3 0.0 0.32 11.2 0.0 2.1 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain SE PF08491.10 EME69688.1 - 0.2 10.7 0.0 0.33 10.0 0.0 1.2 1 0 0 1 1 1 0 Squalene epoxidase MoCF_biosynth PF00994.24 EME69689.1 - 0.0084 15.8 0.1 0.021 14.5 0.0 1.6 1 1 0 1 1 1 1 Probable molybdopterin binding domain NnrS PF05940.12 EME69690.1 - 1.2e-81 274.9 69.4 1.4e-81 274.7 69.4 1.0 1 0 0 1 1 1 1 NnrS protein AMP-binding PF00501.28 EME69691.1 - 1.8e-82 277.2 0.0 2.3e-82 276.9 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 EME69691.1 - 1.4e-23 83.6 0.9 2.8e-23 82.7 0.9 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain MarR PF01047.22 EME69692.1 - 1.6e-14 53.6 0.0 2.9e-14 52.7 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 EME69692.1 - 7.9e-13 48.1 0.1 1.6e-12 47.1 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 EME69692.1 - 1.8e-07 31.5 0.0 2.9e-07 30.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_IclR PF09339.10 EME69692.1 - 4.6e-06 26.3 0.6 1.2e-05 25.0 0.1 1.8 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_34 PF13601.6 EME69692.1 - 9.8e-05 22.5 0.0 0.00023 21.3 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.6 EME69692.1 - 0.00059 19.4 0.0 0.001 18.6 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 EME69692.1 - 0.0087 15.9 0.0 0.28 11.1 0.0 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB DUF4194 PF13835.6 EME69692.1 - 0.063 13.0 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4194) HTH_Crp_2 PF13545.6 EME69692.1 - 0.088 12.8 0.2 0.3 11.1 0.1 1.8 1 1 1 2 2 2 0 Crp-like helix-turn-helix domain RPA_C PF08784.11 EME69692.1 - 0.093 13.4 0.0 0.24 12.1 0.0 1.7 2 0 0 2 2 2 0 Replication protein A C terminal DUF1495 PF07381.11 EME69692.1 - 0.097 12.5 0.0 1.3 8.9 0.0 2.2 1 1 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) HTH_20 PF12840.7 EME69692.1 - 0.097 12.7 0.0 0.21 11.7 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain PadR PF03551.14 EME69692.1 - 0.11 12.5 0.0 0.18 11.8 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HGD-D PF06050.13 EME69693.1 - 3.1e-49 168.5 0.0 3.8e-49 168.2 0.0 1.0 1 0 0 1 1 1 1 2-hydroxyglutaryl-CoA dehydratase, D-component Ribonuc_L-PSP PF01042.21 EME69694.1 - 3.5e-23 81.9 0.0 4.1e-23 81.7 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP Response_reg PF00072.24 EME69695.1 - 1e-17 64.3 0.2 1.1e-17 64.2 0.2 1.0 1 0 0 1 1 1 1 Response regulator receiver domain HisG PF01634.18 EME69696.1 - 1.2e-43 148.9 0.0 1.5e-43 148.6 0.0 1.1 1 0 0 1 1 1 1 ATP phosphoribosyltransferase Aminotran_MocR PF12897.7 EME69696.1 - 0.026 13.3 0.1 2.1 7.1 0.0 2.1 2 0 0 2 2 2 0 Alanine-glyoxylate amino-transferase Histidinol_dh PF00815.20 EME69697.1 - 3.1e-168 560.0 0.1 3.5e-168 559.8 0.1 1.0 1 0 0 1 1 1 1 Histidinol dehydrogenase Glyoxalase_6 PF18029.1 EME69697.1 - 0.21 12.4 0.1 0.21 12.4 0.1 2.7 2 1 0 2 2 2 0 Glyoxalase-like domain UPF0262 PF06793.12 EME69698.1 - 5.1e-69 231.2 0.0 5.8e-69 231.1 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0262) LMWPc PF01451.21 EME69699.1 - 1.6e-17 64.2 0.0 2e-17 63.9 0.0 1.1 1 0 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase eIF-1a PF01176.19 EME69700.1 - 6.2e-28 96.4 0.0 6.9e-28 96.2 0.0 1.0 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 RsgA_N PF16745.5 EME69700.1 - 0.00059 19.5 0.0 0.00069 19.3 0.0 1.3 1 0 0 1 1 1 1 RsgA N-terminal domain S1 PF00575.23 EME69700.1 - 0.0068 16.7 0.0 0.0085 16.4 0.0 1.2 1 0 0 1 1 1 1 S1 RNA binding domain RNase_II_C_S1 PF18614.1 EME69700.1 - 0.019 14.9 0.0 0.04 13.9 0.0 1.8 1 1 0 1 1 1 0 RNase II-type exonuclease C-terminal S1 domain Maf PF02545.14 EME69701.1 - 7.4e-48 162.5 0.0 8.3e-48 162.4 0.0 1.0 1 0 0 1 1 1 1 Maf-like protein RNase_E_G PF10150.9 EME69702.1 - 1.2e-33 116.7 0.0 2.7e-33 115.6 0.0 1.5 2 0 0 2 2 2 1 Ribonuclease E/G family DUF3117 PF11314.8 EME69702.1 - 0.0067 16.2 1.0 0.11 12.3 0.1 2.9 2 0 0 2 2 2 1 Protein of unknown function (DUF3117) YacG PF03884.14 EME69703.1 - 8.3e-14 51.1 1.8 1.1e-13 50.6 1.8 1.2 1 0 0 1 1 1 1 DNA gyrase inhibitor YacG DUF2116 PF09889.9 EME69703.1 - 0.016 15.2 0.4 0.019 15.0 0.4 1.1 1 0 0 1 1 1 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) zf-C6H2 PF15801.5 EME69703.1 - 0.065 13.6 0.3 0.08 13.3 0.3 1.2 1 0 0 1 1 1 0 zf-MYND-like zinc finger, mRNA-binding zf-HIT PF04438.16 EME69703.1 - 0.48 10.3 5.2 5.1 7.0 5.2 2.1 1 1 0 1 1 1 0 HIT zinc finger MethyltransfD12 PF02086.15 EME69704.1 - 4.1e-20 72.6 0.0 5.6e-20 72.1 0.0 1.1 1 0 0 1 1 1 1 D12 class N6 adenine-specific DNA methyltransferase DUF1907 PF08925.11 EME69704.1 - 0.089 12.2 0.0 0.12 11.7 0.0 1.1 1 0 0 1 1 1 0 Domain of Unknown Function (DUF1907) F5_F8_type_C PF00754.25 EME69706.1 - 5.7e-09 36.2 1.5 9.5e-09 35.4 1.5 1.4 1 0 0 1 1 1 1 F5/8 type C domain DUF2313 PF10076.9 EME69707.1 - 8.1e-39 133.1 0.0 9.1e-39 132.9 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein conserved in bacteria (DUF2313) Nif11 PF07862.11 EME69707.1 - 0.035 14.4 0.1 0.11 12.9 0.0 1.8 2 0 0 2 2 2 0 Nif11 domain Baseplate_J PF04865.14 EME69708.1 - 2.1e-57 194.2 2.7 2.7e-57 193.8 2.7 1.1 1 0 0 1 1 1 1 Baseplate J-like protein GP46 PF07409.12 EME69709.1 - 3.1e-33 114.0 0.7 3.6e-33 113.7 0.7 1.1 1 0 0 1 1 1 1 Phage protein GP46 Phage_Mu_Gp45 PF06890.12 EME69710.1 - 6.8e-23 80.3 0.1 1e-22 79.7 0.1 1.3 1 0 0 1 1 1 1 Bacteriophage Mu Gp45 protein FLgD_tudor PF13861.6 EME69710.1 - 0.0056 16.9 0.0 0.0088 16.3 0.0 1.3 1 0 0 1 1 1 1 FlgD Tudor-like domain Phage_GPD PF05954.11 EME69711.1 - 4.3e-11 42.7 0.0 8.2e-11 41.7 0.0 1.4 1 1 0 1 1 1 1 Phage late control gene D protein (GPD) DNA_circ_N PF07157.12 EME69712.1 - 3.7e-25 88.1 0.0 8.2e-25 87.0 0.0 1.6 1 0 0 1 1 1 1 DNA circularisation protein N-terminus ZapA PF05164.13 EME69713.1 - 0.22 12.0 1.4 4.4 7.8 0.1 3.2 3 0 0 3 3 3 0 Cell division protein ZapA Tail_tube PF10618.9 EME69715.1 - 1.3e-15 57.4 0.3 1.4e-15 57.2 0.3 1.0 1 0 0 1 1 1 1 Phage tail tube protein DUF2635 PF10948.8 EME69716.1 - 1.3e-15 56.8 0.1 2e-15 56.2 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2635) DUF1834 PF08873.11 EME69717.1 - 2.1e-28 99.5 0.0 2.6e-28 99.2 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1834) Phage_tail_S PF05069.13 EME69718.1 - 9.4e-34 116.4 0.9 3.6e-32 111.2 0.9 2.0 1 1 0 1 1 1 1 Phage virion morphogenesis family Dis3l2_C_term PF17877.1 EME69718.1 - 0.059 13.7 0.0 0.082 13.3 0.0 1.2 1 0 0 1 1 1 0 DIS3-like exonuclease 2 C terminal DUF2724 PF10893.8 EME69718.1 - 0.13 12.1 0.0 0.25 11.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2724) DUF1320 PF07030.12 EME69719.1 - 2.2e-31 108.6 0.1 2.4e-31 108.5 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1320) Plasmid_RAQPRD PF09686.10 EME69719.1 - 0.00054 20.1 0.1 0.00099 19.3 0.1 1.3 1 0 0 1 1 1 1 Plasmid protein of unknown function (Plasmid_RAQPRD) HTHP PF11534.8 EME69719.1 - 0.15 12.5 0.0 0.31 11.5 0.0 1.5 1 0 0 1 1 1 0 Hexameric tyrosine-coordinated heme protein (HTHP) Phage_connect_1 PF05135.13 EME69719.1 - 0.23 12.0 0.0 0.3 11.6 0.0 1.3 1 0 0 1 1 1 0 Phage gp6-like head-tail connector protein End3 PF12761.7 EME69720.1 - 0.033 14.4 0.6 0.043 14.0 0.5 1.3 1 1 0 1 1 1 0 Actin cytoskeleton-regulatory complex protein END3 DUF4680 PF15730.5 EME69720.1 - 2 8.8 8.3 1.3 9.4 6.5 1.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4680) Phage_cap_E PF03864.15 EME69721.1 - 3.7e-05 23.1 0.0 5.2e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 Phage major capsid protein E DUF2190 PF09956.9 EME69722.1 - 2e-11 44.2 8.4 2.6e-11 43.9 8.4 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2190) PBECR2 PF18810.1 EME69724.1 - 1.1e-18 67.6 0.0 2.8e-18 66.3 0.0 1.6 1 0 0 1 1 1 1 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2 Phage_Mu_F PF04233.14 EME69724.1 - 4.1e-14 53.3 0.1 1.3e-12 48.4 0.0 2.2 2 0 0 2 2 2 1 Phage Mu protein F like protein DUF935 PF06074.12 EME69725.1 - 3.6e-77 260.3 0.0 5.1e-77 259.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF935) DUF1804 PF08822.11 EME69727.1 - 3.6e-52 176.6 1.2 4e-52 176.5 1.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1804) HTH_3 PF01381.22 EME69727.1 - 0.021 14.9 0.0 1.9 8.6 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix HTH_23 PF13384.6 EME69727.1 - 0.026 14.3 1.2 0.41 10.5 0.1 2.4 2 0 0 2 2 2 0 Homeodomain-like domain SmpA_OmlA PF04355.13 EME69728.1 - 0.025 14.4 0.0 0.036 13.8 0.0 1.2 1 0 0 1 1 1 0 SmpA / OmlA family RQC PF09382.10 EME69728.1 - 0.067 13.0 0.0 0.093 12.5 0.0 1.2 1 0 0 1 1 1 0 RQC domain DUF2730 PF10805.8 EME69729.1 - 1.9e-10 40.8 0.3 4.8e-09 36.2 0.3 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF2730) DUF16 PF01519.16 EME69729.1 - 0.0034 17.9 0.0 0.0044 17.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF16 SLT PF01464.20 EME69732.1 - 1.1e-11 44.4 0.0 1.8e-11 43.7 0.0 1.3 1 0 0 1 1 1 1 Transglycosylase SLT domain Phage_holin_3_6 PF07332.11 EME69732.1 - 0.66 10.0 0.1 0.66 10.0 0.1 2.1 1 1 1 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III Mor PF08765.11 EME69733.1 - 2.6e-06 27.4 0.0 0.0098 15.9 0.0 2.3 1 1 1 2 2 2 2 Mor transcription activator family Sigma70_r4_2 PF08281.12 EME69733.1 - 4.1e-05 23.2 0.2 0.0044 16.7 0.0 2.2 2 0 0 2 2 2 2 Sigma-70, region 4 HTH_23 PF13384.6 EME69733.1 - 0.00023 20.9 1.3 0.00055 19.6 0.4 2.0 2 0 0 2 2 2 1 Homeodomain-like domain Terminase_5 PF06056.12 EME69733.1 - 0.0019 18.0 0.3 0.017 15.0 0.1 2.2 2 0 0 2 2 2 1 Putative ATPase subunit of terminase (gpP-like) HTH_29 PF13551.6 EME69733.1 - 0.03 14.3 1.1 0.042 13.9 0.2 1.7 2 0 0 2 2 2 0 Winged helix-turn helix HTH_11 PF08279.12 EME69733.1 - 0.12 12.3 0.1 0.31 11.0 0.0 1.7 2 0 0 2 2 2 0 HTH domain DUF1018 PF06252.12 EME69735.1 - 3e-34 118.6 1.0 1.3e-31 110.1 0.1 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF1018) GcrA PF07750.11 EME69740.1 - 8.4e-10 39.3 0.8 0.00068 20.1 0.0 2.3 2 0 0 2 2 2 2 GcrA cell cycle regulator Sigma70_r4_2 PF08281.12 EME69740.1 - 0.08 12.6 0.0 7.5 6.3 0.0 2.4 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_3 PF01381.22 EME69741.1 - 1.5e-12 47.3 0.4 2.8e-12 46.5 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.6 EME69741.1 - 1.3e-08 35.1 0.1 2.3e-08 34.3 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 EME69741.1 - 4.7e-06 26.5 0.0 6.8e-06 26.0 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 EME69741.1 - 0.056 13.9 0.0 0.092 13.2 0.0 1.4 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain PP-binding PF00550.25 EME69743.1 - 0.083 13.3 0.0 0.14 12.5 0.0 1.4 1 0 0 1 1 1 0 Phosphopantetheine attachment site DUF3164 PF11363.8 EME69745.1 - 3.3e-58 196.5 0.0 5.1e-58 195.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3164) Bac_DnaA_C PF08299.11 EME69746.1 - 1.8e-17 63.1 0.2 6.3e-17 61.4 0.0 1.8 2 0 0 2 2 2 1 Bacterial dnaA protein helix-turn-helix HTH_38 PF13936.6 EME69746.1 - 0.022 14.5 0.9 0.041 13.7 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain DUF3218 PF11508.8 EME69747.1 - 0.098 12.1 0.0 0.12 11.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3218) SMN PF06003.12 EME69748.1 - 0.3 10.3 1.4 0.36 10.0 1.4 1.2 1 0 0 1 1 1 0 Survival motor neuron protein (SMN) AAA_22 PF13401.6 EME69750.1 - 5.3e-14 52.7 0.0 9.3e-14 51.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 EME69750.1 - 0.00085 19.8 0.0 0.0014 19.0 0.0 1.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TniB PF05621.11 EME69750.1 - 0.00088 18.7 0.0 0.0013 18.2 0.0 1.3 1 0 0 1 1 1 1 Bacterial TniB protein AAA_16 PF13191.6 EME69750.1 - 0.016 15.6 0.0 0.9 9.9 0.0 2.6 1 1 1 2 2 2 0 AAA ATPase domain Mu-transpos_C PF09299.11 EME69751.1 - 8.6e-14 51.2 0.3 1.9e-13 50.2 0.3 1.6 1 0 0 1 1 1 1 Mu transposase, C-terminal rve PF00665.26 EME69751.1 - 1.3e-08 35.0 0.0 1.3e-07 31.8 0.0 2.3 2 0 0 2 2 2 1 Integrase core domain HTH_Tnp_Mu_1 PF02316.16 EME69751.1 - 3.7e-05 23.9 0.0 7.9e-05 22.9 0.0 1.5 1 0 0 1 1 1 1 Mu DNA-binding domain DDE_2 PF02914.15 EME69751.1 - 0.0095 15.7 0.0 0.016 14.9 0.0 1.3 1 0 0 1 1 1 1 Bacteriophage Mu transposase HTH_35 PF13693.6 EME69753.1 - 9.1e-14 51.3 0.0 1.1e-13 51.0 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TetR_N PF00440.23 EME69753.1 - 0.0042 16.8 0.4 0.72 9.7 0.1 2.5 3 0 0 3 3 3 2 Bacterial regulatory proteins, tetR family HTH_3 PF01381.22 EME69753.1 - 0.045 13.8 0.2 4.6 7.4 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix HTH_3 PF01381.22 EME69754.1 - 2.8e-07 30.5 0.0 4.8e-07 29.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 EME69754.1 - 1.8e-06 28.2 0.3 4.5e-06 26.9 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_19 PF12844.7 EME69754.1 - 0.0069 16.4 0.0 0.014 15.4 0.0 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_36 PF13730.6 EME69754.1 - 0.049 13.6 0.0 0.16 11.9 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain Phage_CI_repr PF07022.13 EME69754.1 - 0.074 13.2 0.0 0.13 12.4 0.0 1.4 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain DUF1018 PF06252.12 EME69755.1 - 0.03 15.3 0.0 0.059 14.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1018) Polbeta PF18765.1 EME69758.1 - 6.3e-09 35.8 0.0 7e-09 35.7 0.0 1.0 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 EME69758.1 - 4e-07 30.2 0.0 5e-07 29.9 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF86 PF01934.17 EME69759.1 - 5.8e-18 64.9 0.0 1.5e-16 60.3 0.0 2.0 1 1 0 1 1 1 1 Protein of unknown function DUF86 Catalase-rel PF06628.12 EME69759.1 - 0.11 12.7 0.0 0.18 12.0 0.0 1.3 1 0 0 1 1 1 0 Catalase-related immune-responsive T3SchapCesA PF11439.8 EME69759.1 - 0.14 12.3 0.0 2.8 8.2 0.0 2.1 1 1 1 2 2 2 0 Type III secretion system filament chaperone CesA Gate PF07670.14 EME69760.1 - 6.9e-11 42.4 13.7 2.5e-08 34.2 1.0 3.2 3 1 0 3 3 3 2 Nucleoside recognition TPR_9 PF13371.6 EME69761.1 - 0.017 15.2 3.4 0.039 14.1 3.4 1.6 1 0 0 1 1 1 0 Tetratricopeptide repeat LrgB PF04172.16 EME69762.1 - 1.4e-77 260.1 18.9 1.5e-77 259.9 18.9 1.0 1 0 0 1 1 1 1 LrgB-like family LrgA PF03788.14 EME69763.1 - 7.9e-25 86.6 6.4 9.6e-25 86.4 6.4 1.1 1 0 0 1 1 1 1 LrgA family PQ-loop PF04193.14 EME69764.1 - 1.2e-09 37.8 0.4 1.8e-09 37.2 0.4 1.2 1 0 0 1 1 1 1 PQ loop repeat MtN3_slv PF03083.16 EME69764.1 - 4.3e-05 23.5 0.6 5.3e-05 23.2 0.6 1.2 1 0 0 1 1 1 1 Sugar efflux transporter for intercellular exchange DUF3367 PF11847.8 EME69764.1 - 0.0071 14.3 1.4 0.0093 13.9 1.4 1.1 1 0 0 1 1 1 1 Alpha-(1->3)-arabinofuranosyltransferase Imp-YgjV PF10688.9 EME69764.1 - 0.064 13.1 5.2 0.22 11.3 5.2 1.8 1 1 0 1 1 1 0 Bacterial inner membrane protein DUF3040 PF11239.8 EME69764.1 - 0.73 10.1 2.9 0.59 10.4 1.4 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF3040) Pribosyltran PF00156.27 EME69765.1 - 2.4e-09 36.9 0.0 3.5e-09 36.4 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain ECH_1 PF00378.20 EME69766.1 - 2e-45 155.1 0.0 2.4e-45 154.8 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 EME69766.1 - 7.6e-24 84.8 0.0 1e-23 84.4 0.0 1.2 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase DUF3599 PF12206.8 EME69766.1 - 0.18 12.1 0.0 0.32 11.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3599) Response_reg PF00072.24 EME69768.1 - 5.5e-26 90.9 0.0 2.5e-25 88.8 0.0 1.9 2 0 0 2 2 2 1 Response regulator receiver domain HATPase_c PF02518.26 EME69768.1 - 1.1e-18 67.7 0.0 1.6e-18 67.3 0.0 1.2 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 2-oxoacid_dh PF00198.23 EME69769.1 - 2e-12 47.1 0.0 2e-12 47.0 0.0 1.0 1 0 0 1 1 1 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) PFOR_II PF17147.4 EME69771.1 - 0.17 12.2 0.0 0.29 11.5 0.0 1.3 1 0 0 1 1 1 0 Pyruvate:ferredoxin oxidoreductase core domain II Pyr_redox_2 PF07992.14 EME69772.1 - 2.5e-62 210.8 5.0 2.5e-62 210.8 5.0 1.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 EME69772.1 - 4.1e-37 126.8 2.5 4.1e-37 126.8 2.5 2.0 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 EME69772.1 - 9.2e-21 74.2 9.1 2.3e-18 66.5 0.5 3.7 4 0 0 4 4 4 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 EME69772.1 - 3.2e-16 59.5 2.4 1.2e-15 57.6 2.4 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 EME69772.1 - 1.5e-09 37.5 4.1 1.5e-09 37.5 4.1 2.9 2 2 0 3 3 3 1 Glucose inhibited division protein A FAD_oxidored PF12831.7 EME69772.1 - 3.9e-09 36.4 0.7 3.9e-09 36.4 0.7 1.6 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 EME69772.1 - 5.3e-08 32.4 10.0 1e-06 28.1 0.9 3.6 4 0 0 4 4 4 2 FAD binding domain HI0933_like PF03486.14 EME69772.1 - 9.5e-05 21.3 14.6 0.00035 19.4 0.9 3.4 3 1 1 4 4 4 3 HI0933-like protein NAD_binding_8 PF13450.6 EME69772.1 - 0.00013 22.1 6.0 0.011 16.0 1.1 3.1 3 0 0 3 3 3 2 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 EME69772.1 - 0.0012 18.2 3.3 0.071 12.3 0.3 2.7 2 1 0 2 2 2 2 FAD binding domain 2-Hacid_dh_C PF02826.19 EME69772.1 - 0.002 17.5 1.2 0.016 14.6 0.0 2.6 3 0 0 3 3 3 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 EME69772.1 - 0.022 14.0 10.8 0.097 12.0 1.1 3.1 3 1 0 3 3 3 0 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.18 EME69772.1 - 0.029 14.2 0.7 0.029 14.2 0.7 2.2 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DAO PF01266.24 EME69772.1 - 0.034 13.7 17.6 0.46 10.0 2.7 4.0 3 1 0 4 4 4 0 FAD dependent oxidoreductase Thi4 PF01946.17 EME69772.1 - 0.046 12.9 0.1 0.046 12.9 0.1 2.7 4 0 0 4 4 4 0 Thi4 family Trp_halogenase PF04820.14 EME69772.1 - 0.051 12.4 1.2 0.13 11.1 0.4 1.9 2 0 0 2 2 2 0 Tryptophan halogenase Ribosomal_S9 PF00380.19 EME69772.1 - 0.18 12.3 0.8 6.3 7.3 0.0 2.5 2 0 0 2 2 2 0 Ribosomal protein S9/S16 Lycopene_cycl PF05834.12 EME69772.1 - 1.1 8.2 3.7 2.2 7.3 1.1 2.5 2 1 0 2 2 2 0 Lycopene cyclase protein NAD_binding_7 PF13241.6 EME69772.1 - 1.6 9.2 5.5 1.4 9.3 0.2 3.0 3 1 0 3 3 3 0 Putative NAD(P)-binding Pentapeptide PF00805.22 EME69773.1 - 7.1e-31 105.4 20.2 3.2e-10 39.4 1.9 4.1 1 1 3 4 4 4 4 Pentapeptide repeats (8 copies) Pentapeptide_3 PF13576.6 EME69773.1 - 8.5e-16 57.9 0.1 1.2e-05 25.3 0.1 3.8 1 1 2 3 3 3 3 Pentapeptide repeats (9 copies) Pentapeptide_4 PF13599.6 EME69773.1 - 3.5e-14 52.7 0.0 3.1e-08 33.7 0.0 2.1 1 1 1 2 2 2 2 Pentapeptide repeats (9 copies) Radical_SAM PF04055.21 EME69774.1 - 2.3e-13 50.9 0.4 8.1e-13 49.1 0.1 2.0 2 1 1 3 3 3 1 Radical SAM superfamily LIAS_N PF16881.5 EME69774.1 - 3.2e-07 30.7 0.2 5.8e-07 29.9 0.2 1.4 1 0 0 1 1 1 1 N-terminal domain of lipoyl synthase of Radical_SAM family Polyketide_cyc PF03364.20 EME69775.1 - 2.8e-31 108.4 0.1 3.1e-31 108.3 0.1 1.0 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc2 PF10604.9 EME69775.1 - 9.9e-09 35.6 0.0 1.1e-08 35.4 0.0 1.0 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport ROS_MUCR PF05443.11 EME69776.1 - 2e-50 170.0 0.0 2.3e-50 169.8 0.0 1.0 1 0 0 1 1 1 1 ROS/MUCR transcriptional regulator protein LacAB_rpiB PF02502.18 EME69777.1 - 1e-53 181.1 0.0 1.1e-53 180.9 0.0 1.0 1 0 0 1 1 1 1 Ribose/Galactose Isomerase SHMT PF00464.19 EME69778.1 - 1.9e-180 599.7 0.0 2.2e-180 599.5 0.0 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.21 EME69778.1 - 2.4e-06 27.0 0.0 3.4e-06 26.5 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 EME69778.1 - 0.00041 19.8 0.1 0.00064 19.1 0.1 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 EME69778.1 - 0.00054 19.3 0.0 0.00099 18.5 0.0 1.4 1 1 0 1 1 1 1 Beta-eliminating lyase ATP-cone PF03477.16 EME69779.1 - 8.3e-19 67.9 0.1 1.1e-18 67.6 0.1 1.2 1 0 0 1 1 1 1 ATP cone domain TFIIS_C PF01096.18 EME69779.1 - 0.029 14.2 0.1 0.041 13.7 0.1 1.2 1 0 0 1 1 1 0 Transcription factor S-II (TFIIS) TF_Zn_Ribbon PF08271.12 EME69779.1 - 0.092 12.3 0.1 0.19 11.3 0.1 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding PBC PF03792.13 EME69779.1 - 0.11 12.3 0.0 0.16 11.7 0.0 1.2 1 0 0 1 1 1 0 PBC domain RibD_C PF01872.17 EME69780.1 - 6.4e-49 166.5 0.1 9.1e-49 166.0 0.1 1.2 1 0 0 1 1 1 1 RibD C-terminal domain dCMP_cyt_deam_1 PF00383.23 EME69780.1 - 1.1e-15 57.4 0.1 1.9e-15 56.6 0.1 1.4 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region MafB19-deam PF14437.6 EME69780.1 - 1.5e-10 41.0 0.0 2.3e-10 40.4 0.0 1.2 1 0 0 1 1 1 1 MafB19-like deaminase Inv-AAD PF18785.1 EME69780.1 - 0.0016 18.3 0.0 0.0056 16.5 0.0 1.9 2 1 0 2 2 2 1 Invertebrate-AID/APOBEC-deaminase Lum_binding PF00677.17 EME69781.1 - 1.4e-49 166.0 0.1 9.1e-25 86.5 0.0 2.0 2 0 0 2 2 2 2 Lumazine binding domain HMG-CoA_red PF00368.18 EME69781.1 - 0.059 12.4 0.0 0.071 12.1 0.0 1.1 1 0 0 1 1 1 0 Hydroxymethylglutaryl-coenzyme A reductase DHBP_synthase PF00926.19 EME69782.1 - 1.7e-80 269.1 1.1 3.5e-80 268.1 0.7 1.6 2 0 0 2 2 2 1 3,4-dihydroxy-2-butanone 4-phosphate synthase GTP_cyclohydro2 PF00925.20 EME69782.1 - 1.4e-34 119.1 0.0 7.3e-34 116.7 0.0 2.1 1 1 0 1 1 1 1 GTP cyclohydrolase II DUF1643 PF07799.12 EME69782.1 - 0.11 12.7 0.0 0.19 11.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1643) DMRL_synthase PF00885.19 EME69783.1 - 8.9e-37 126.0 0.1 9.9e-37 125.9 0.1 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase NusB PF01029.18 EME69784.1 - 7.8e-29 100.6 0.0 8.8e-29 100.4 0.0 1.0 1 0 0 1 1 1 1 NusB family AIRS PF00586.24 EME69785.1 - 4.3e-21 75.4 0.1 1.3e-20 73.9 0.1 1.8 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 EME69785.1 - 3.7e-10 40.1 0.7 5.9e-10 39.5 0.7 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain LapA_dom PF06305.11 EME69786.1 - 1.8 8.4 4.7 3.6 7.5 4.1 1.7 2 0 0 2 2 2 0 Lipopolysaccharide assembly protein A domain H_PPase PF03030.16 EME69787.1 - 1.4e-263 876.4 55.7 1.6e-263 876.2 55.7 1.0 1 0 0 1 1 1 1 Inorganic H+ pyrophosphatase SmpA_OmlA PF04355.13 EME69788.1 - 5.3e-17 61.4 0.0 6.8e-17 61.0 0.0 1.1 1 0 0 1 1 1 1 SmpA / OmlA family DUF4148 PF13663.6 EME69788.1 - 0.06 13.5 0.4 0.095 12.9 0.4 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4148) Ubiq_cyt_C_chap PF03981.12 EME69789.1 - 2.4e-44 150.9 1.7 3e-44 150.5 1.7 1.1 1 0 0 1 1 1 1 Ubiquinol-cytochrome C chaperone DUF4605 PF15378.6 EME69789.1 - 0.076 12.9 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4605) YceD PF02620.17 EME69790.1 - 5.6e-14 52.3 0.0 8.6e-14 51.7 0.0 1.3 1 0 0 1 1 1 1 Large ribosomal RNA subunit accumulation protein YceD Ribosomal_L32p PF01783.23 EME69791.1 - 2.5e-28 98.1 4.0 2.7e-28 98.0 4.0 1.0 1 0 0 1 1 1 1 Ribosomal L32p protein family OrfB_Zn_ribbon PF07282.11 EME69791.1 - 0.002 18.0 2.3 0.0029 17.5 1.8 1.6 1 1 0 1 1 1 1 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.6 EME69791.1 - 0.23 10.9 8.5 1.1 8.8 8.5 1.9 1 1 0 1 1 1 0 zinc-ribbon domain YhfH PF14149.6 EME69791.1 - 0.58 10.2 5.3 3.4 7.7 0.2 2.4 1 1 1 2 2 2 0 YhfH-like protein Zn-ribbon_8 PF09723.10 EME69791.1 - 1 9.5 4.7 3.3 7.9 0.4 2.2 1 1 1 2 2 2 0 Zinc ribbon domain TF_Zn_Ribbon PF08271.12 EME69791.1 - 2.9 7.5 8.1 35 4.0 8.1 2.1 1 1 0 1 1 1 0 TFIIB zinc-binding DUF1610 PF07754.11 EME69791.1 - 5 7.2 10.0 1.2 9.2 3.8 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) FA_synthesis PF02504.15 EME69792.1 - 1.3e-102 343.2 0.5 1.4e-102 343.1 0.5 1.0 1 0 0 1 1 1 1 Fatty acid synthesis protein ACP_syn_III_C PF08541.10 EME69793.1 - 2e-36 124.0 0.6 5.4e-36 122.6 0.1 2.0 3 0 0 3 3 3 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ACP_syn_III PF08545.10 EME69793.1 - 3.9e-35 119.6 0.7 7.7e-35 118.6 0.7 1.5 1 0 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Thiolase_N PF00108.23 EME69793.1 - 9.1e-09 35.0 2.7 2.4e-08 33.6 0.3 2.3 2 1 1 3 3 3 1 Thiolase, N-terminal domain FAE1_CUT1_RppA PF08392.12 EME69793.1 - 0.0006 19.2 0.0 0.0016 17.8 0.0 1.7 2 0 0 2 2 2 1 FAE1/Type III polyketide synthase-like protein ketoacyl-synt PF00109.26 EME69793.1 - 0.046 13.3 4.9 0.093 12.3 0.8 2.7 1 1 1 2 2 2 0 Beta-ketoacyl synthase, N-terminal domain Bac_DNA_binding PF00216.21 EME69794.1 - 1.3e-27 95.8 0.0 1.5e-27 95.6 0.0 1.0 1 0 0 1 1 1 1 Bacterial DNA-binding protein HU-HIG PF18291.1 EME69794.1 - 3.3e-09 36.9 0.0 3.6e-09 36.8 0.0 1.0 1 0 0 1 1 1 1 HU domain fused to wHTH, Ig, or Glycine-rich motif HU-CCDC81_euk_1 PF14908.6 EME69794.1 - 0.11 12.6 0.0 0.13 12.4 0.0 1.2 1 0 0 1 1 1 0 CCDC81 eukaryotic HU domain 1 MerR_1 PF13411.6 EME69795.1 - 4e-24 84.5 0.4 5.3e-24 84.1 0.0 1.4 2 0 0 2 2 2 1 MerR HTH family regulatory protein MerR PF00376.23 EME69795.1 - 2.8e-06 27.0 0.0 5e-06 26.2 0.0 1.5 1 0 0 1 1 1 1 MerR family regulatory protein HTH_Tnp_1 PF01527.20 EME69795.1 - 0.0013 19.0 0.0 0.021 15.1 0.0 2.4 2 0 0 2 2 2 1 Transposase Ribosomal_60s PF00428.19 EME69795.1 - 0.028 15.0 0.2 0.055 14.0 0.2 1.5 1 0 0 1 1 1 0 60s Acidic ribosomal protein HTH_17 PF12728.7 EME69795.1 - 0.052 13.7 0.0 0.22 11.7 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain Methyltransf_21 PF05050.12 EME69796.1 - 1.7e-16 60.7 0.0 2.4e-16 60.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase FkbM domain Glyco_transf_41 PF13844.6 EME69797.1 - 5.3e-86 288.9 0.0 2e-43 148.5 0.0 2.1 1 1 1 2 2 2 2 Glycosyl transferase family 41 TPR_2 PF07719.17 EME69797.1 - 1.6e-56 183.9 33.2 8.6e-08 31.7 0.3 11.3 11 0 0 11 11 11 8 Tetratricopeptide repeat TPR_11 PF13414.6 EME69797.1 - 1.6e-52 174.9 13.6 7.3e-09 35.2 0.0 9.9 1 1 9 10 10 10 8 TPR repeat TPR_1 PF00515.28 EME69797.1 - 1e-49 164.4 14.1 6.2e-09 35.3 0.2 9.9 10 0 0 10 10 10 6 Tetratricopeptide repeat TPR_16 PF13432.6 EME69797.1 - 6.7e-45 151.5 63.1 3.9e-11 43.4 4.0 7.5 5 1 3 8 8 8 7 Tetratricopeptide repeat TPR_8 PF13181.6 EME69797.1 - 4.8e-39 129.3 1.3 7.4e-05 22.7 0.1 9.2 10 0 0 10 10 8 6 Tetratricopeptide repeat TPR_14 PF13428.6 EME69797.1 - 4.1e-37 123.7 56.6 2.7e-07 30.9 0.2 11.6 3 2 8 11 11 11 10 Tetratricopeptide repeat TPR_17 PF13431.6 EME69797.1 - 2.2e-36 121.6 7.6 0.00018 21.7 0.0 10.5 10 0 0 10 10 10 6 Tetratricopeptide repeat TPR_19 PF14559.6 EME69797.1 - 2.5e-34 117.6 37.6 1.6e-08 34.9 0.2 7.5 4 2 4 8 8 8 7 Tetratricopeptide repeat TPR_12 PF13424.6 EME69797.1 - 2.4e-30 104.6 36.9 4.1e-07 30.2 0.3 7.2 4 2 4 8 8 8 7 Tetratricopeptide repeat TPR_7 PF13176.6 EME69797.1 - 5.2e-23 79.3 18.9 0.0034 17.3 0.0 10.1 10 0 0 10 10 10 5 Tetratricopeptide repeat TPR_9 PF13371.6 EME69797.1 - 8.7e-21 73.9 39.2 1.7e-07 31.3 1.1 6.6 5 1 1 6 6 6 5 Tetratricopeptide repeat TPR_10 PF13374.6 EME69797.1 - 8.4e-20 70.0 47.1 0.0034 17.2 0.5 10.5 10 0 0 10 10 10 6 Tetratricopeptide repeat TPR_6 PF13174.6 EME69797.1 - 2.9e-18 65.2 9.2 0.04 14.5 0.1 8.4 8 0 0 8 8 8 4 Tetratricopeptide repeat TPR_4 PF07721.14 EME69797.1 - 5.4e-18 63.7 51.0 0.00045 20.6 0.0 11.8 10 0 0 10 10 10 6 Tetratricopeptide repeat ANAPC3 PF12895.7 EME69797.1 - 3e-14 53.0 4.5 0.0035 17.5 0.0 4.4 3 1 1 4 4 4 4 Anaphase-promoting complex, cyclosome, subunit 3 BTAD PF03704.17 EME69797.1 - 2e-07 31.6 35.1 0.00022 21.7 0.3 5.8 2 1 3 6 6 5 4 Bacterial transcriptional activator domain TPR_20 PF14561.6 EME69797.1 - 1e-06 29.0 15.9 0.53 10.7 0.1 6.7 3 3 4 7 7 7 3 Tetratricopeptide repeat TPR_3 PF07720.12 EME69797.1 - 6.5e-05 22.8 1.1 4.1 7.5 0.0 5.8 7 0 0 7 7 5 1 Tetratricopeptide repeat TPR_15 PF13429.6 EME69797.1 - 0.0003 20.1 14.2 0.072 12.3 2.2 4.8 2 2 3 5 5 5 2 Tetratricopeptide repeat NARP1 PF12569.8 EME69797.1 - 0.0058 15.6 0.0 5.9 5.7 0.0 3.1 2 1 1 3 3 3 0 NMDA receptor-regulated protein 1 Fis1_TPR_C PF14853.6 EME69797.1 - 0.019 15.0 1.0 3 8.0 0.1 3.5 3 0 0 3 3 3 0 Fis1 C-terminal tetratricopeptide repeat DUF4810 PF16068.5 EME69797.1 - 0.037 14.6 0.2 3.7 8.2 0.0 3.6 2 1 2 4 4 4 0 Domain of unknown function (DUF4810) TPPII_N PF12583.8 EME69797.1 - 0.073 13.7 0.1 17 6.0 0.0 2.4 2 0 0 2 2 2 0 Tripeptidyl peptidase II N terminal DUF3856 PF12968.7 EME69797.1 - 0.087 12.9 4.3 23 5.0 0.2 5.0 2 2 0 3 3 3 0 Domain of Unknown Function (DUF3856) ANAPC5 PF12862.7 EME69797.1 - 0.14 12.2 3.3 1.4 9.0 0.5 3.3 3 1 0 3 3 3 0 Anaphase-promoting complex subunit 5 PPR_1 PF12854.7 EME69797.1 - 1.1 9.0 3.3 43 3.9 0.1 3.7 3 0 0 3 3 3 0 PPR repeat TPR_21 PF09976.9 EME69797.1 - 1.2 8.9 11.5 0.59 9.8 0.4 3.9 2 1 2 4 4 4 0 Tetratricopeptide repeat-like domain PPR PF01535.20 EME69797.1 - 2.4 8.6 4.2 56 4.3 0.0 4.4 5 0 0 5 5 3 0 PPR repeat SNAP PF14938.6 EME69797.1 - 7.3 5.9 6.4 8.6 5.7 1.4 2.6 1 1 0 2 2 2 0 Soluble NSF attachment protein, SNAP MIT PF04212.18 EME69797.1 - 8.4 6.5 7.2 12 6.1 0.4 4.1 5 0 0 5 5 5 0 MIT (microtubule interacting and transport) domain DHO_dh PF01180.21 EME69799.1 - 6.2e-11 42.1 0.0 1.9e-10 40.5 0.0 1.8 1 1 0 1 1 1 1 Dihydroorotate dehydrogenase His_biosynth PF00977.21 EME69799.1 - 0.0073 15.8 0.2 0.17 11.3 0.1 2.8 1 1 2 3 3 3 1 Histidine biosynthesis protein FMN_dh PF01070.18 EME69799.1 - 0.034 13.2 0.5 0.082 11.9 0.5 1.8 1 1 0 1 1 1 0 FMN-dependent dehydrogenase BtpA PF03437.15 EME69799.1 - 0.053 13.0 0.5 15 5.0 0.0 3.0 3 0 0 3 3 3 0 BtpA family IMPDH PF00478.25 EME69799.1 - 0.082 11.9 0.6 0.26 10.3 0.4 1.8 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain Glyco_transf_4 PF13439.6 EME69800.1 - 0.014 15.4 0.5 0.071 13.1 0.2 2.1 1 1 0 2 2 2 0 Glycosyltransferase Family 4 CutA1 PF03091.15 EME69801.1 - 2.6e-34 117.0 0.0 2.8e-34 116.9 0.0 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein IspD PF01128.19 EME69802.1 - 2.1e-62 210.7 1.3 3.4e-62 210.1 1.3 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YgbB PF02542.16 EME69802.1 - 9.3e-61 204.6 0.0 6.7e-60 201.9 0.1 2.0 2 0 0 2 2 2 1 YgbB family NTP_transf_3 PF12804.7 EME69802.1 - 4e-10 40.3 2.5 6.9e-10 39.5 2.5 1.5 1 0 0 1 1 1 1 MobA-like NTP transferase domain Cytochrom_C_asm PF01578.20 EME69803.1 - 3.2e-14 53.2 11.5 4.9e-14 52.6 11.5 1.4 1 1 0 1 1 1 1 Cytochrome C assembly protein Dus PF01207.17 EME69804.1 - 1.7e-111 372.2 0.1 2.1e-111 371.9 0.1 1.0 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) DHO_dh PF01180.21 EME69804.1 - 3.6e-08 33.0 0.2 1.3e-05 24.5 0.2 2.2 1 1 0 1 1 1 1 Dihydroorotate dehydrogenase His_biosynth PF00977.21 EME69804.1 - 0.0033 16.9 1.0 0.0086 15.6 0.7 1.9 1 1 1 2 2 2 1 Histidine biosynthesis protein DeoC PF01791.9 EME69804.1 - 0.011 15.4 0.2 0.73 9.4 0.0 2.2 1 1 1 2 2 2 0 DeoC/LacD family aldolase PEP_mutase PF13714.6 EME69804.1 - 0.023 14.1 0.6 0.056 12.9 0.1 2.0 2 1 0 2 2 2 0 Phosphoenolpyruvate phosphomutase HATPase_c PF02518.26 EME69805.1 - 3.2e-19 69.5 0.0 6.6e-19 68.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 EME69805.1 - 5.3e-12 45.6 0.2 1.3e-11 44.3 0.1 1.8 1 1 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.10 EME69805.1 - 5.2e-09 36.3 0.0 1.2e-08 35.1 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS PF00989.25 EME69805.1 - 5e-08 32.9 0.0 9.8e-08 32.0 0.0 1.4 1 0 0 1 1 1 1 PAS fold HATPase_c_5 PF14501.6 EME69805.1 - 0.0059 16.5 0.0 0.014 15.3 0.0 1.6 1 0 0 1 1 1 1 GHKL domain PAS_8 PF13188.7 EME69805.1 - 0.011 15.7 0.0 0.032 14.3 0.0 1.8 1 0 0 1 1 1 0 PAS domain PAS_9 PF13426.7 EME69805.1 - 0.012 15.9 0.0 0.026 14.8 0.0 1.5 1 0 0 1 1 1 0 PAS domain Sigma54_activat PF00158.26 EME69806.1 - 4.7e-71 237.9 0.0 7.5e-71 237.3 0.0 1.3 1 0 0 1 1 1 1 Sigma-54 interaction domain Sigma54_activ_2 PF14532.6 EME69806.1 - 1.2e-27 96.7 0.0 6.7e-27 94.3 0.0 2.2 2 1 0 2 2 2 1 Sigma-54 interaction domain Response_reg PF00072.24 EME69806.1 - 2.8e-26 91.9 0.0 6.1e-26 90.8 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain HTH_8 PF02954.19 EME69806.1 - 8.9e-14 51.0 0.6 2.6e-13 49.5 0.3 2.0 2 0 0 2 2 2 1 Bacterial regulatory protein, Fis family AAA_5 PF07728.14 EME69806.1 - 6.9e-09 35.8 0.0 1.6e-08 34.6 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 EME69806.1 - 5.4e-06 26.9 0.0 1.3e-05 25.6 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 EME69806.1 - 8.6e-06 26.2 0.2 2.2e-05 24.9 0.2 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_2 PF07724.14 EME69806.1 - 1.1e-05 25.7 0.0 2e-05 24.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) Phage_NinH PF06322.11 EME69806.1 - 0.00072 19.4 0.0 0.0018 18.1 0.0 1.6 1 0 0 1 1 1 1 Phage NinH protein Mg_chelatase PF01078.21 EME69806.1 - 0.011 15.2 0.1 1.4 8.3 0.0 2.3 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_3 PF07726.11 EME69806.1 - 0.019 14.9 0.0 0.045 13.6 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) HTH_30 PF13556.6 EME69806.1 - 0.053 13.3 0.1 0.15 11.9 0.1 1.7 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain AAA_7 PF12775.7 EME69806.1 - 0.18 11.3 0.0 0.34 10.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region HATPase_c PF02518.26 EME69807.1 - 1.8e-19 70.3 0.0 3.3e-19 69.4 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HAMP PF00672.25 EME69807.1 - 3.9e-13 49.5 0.3 3.9e-13 49.5 0.3 2.2 2 0 0 2 2 1 1 HAMP domain HisKA PF00512.25 EME69807.1 - 7.8e-10 38.7 0.0 4e-09 36.4 0.0 2.4 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS PF00989.25 EME69807.1 - 2.1e-07 30.9 0.0 4.7e-07 29.8 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 EME69807.1 - 2.1e-06 27.9 0.0 5.8e-06 26.5 0.0 1.8 1 0 0 1 1 1 1 PAS domain HATPase_c_2 PF13581.6 EME69807.1 - 5.6e-06 26.3 0.0 1.7e-05 24.8 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_4 PF08448.10 EME69807.1 - 7.8e-06 26.1 0.1 1.7e-05 25.0 0.1 1.6 1 0 0 1 1 1 1 PAS fold HATPase_c_5 PF14501.6 EME69807.1 - 0.0013 18.6 0.0 0.0027 17.6 0.0 1.4 1 0 0 1 1 1 1 GHKL domain PAS_7 PF12860.7 EME69807.1 - 0.014 15.5 0.0 0.054 13.7 0.0 2.1 1 1 0 1 1 1 0 PAS fold PAS_10 PF13596.6 EME69807.1 - 0.026 15.1 0.0 0.15 12.7 0.0 2.3 2 0 0 2 2 2 0 PAS domain P22_CoatProtein PF11651.8 EME69807.1 - 0.035 12.7 0.0 0.055 12.1 0.0 1.2 1 0 0 1 1 1 0 P22 coat protein - gene protein 5 PAS_8 PF13188.7 EME69807.1 - 0.064 13.3 0.0 0.21 11.7 0.0 1.9 1 0 0 1 1 1 0 PAS domain HATPase_c_3 PF13589.6 EME69807.1 - 0.14 12.0 0.0 0.24 11.2 0.0 1.3 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Sigma54_activat PF00158.26 EME69808.1 - 4.2e-55 186.0 0.0 5.9e-55 185.5 0.0 1.2 1 0 0 1 1 1 1 Sigma-54 interaction domain Response_reg PF00072.24 EME69808.1 - 5.2e-29 100.7 0.1 9.2e-29 99.9 0.1 1.4 1 0 0 1 1 1 1 Response regulator receiver domain Sigma54_activ_2 PF14532.6 EME69808.1 - 3.1e-21 75.9 0.0 5.5e-21 75.1 0.0 1.4 1 0 0 1 1 1 1 Sigma-54 interaction domain HTH_8 PF02954.19 EME69808.1 - 6.2e-09 35.5 0.2 6.2e-09 35.5 0.2 2.0 2 0 0 2 2 2 1 Bacterial regulatory protein, Fis family AAA_5 PF07728.14 EME69808.1 - 2.6e-06 27.5 0.0 5.4e-06 26.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 EME69808.1 - 0.00028 21.3 0.1 0.00085 19.7 0.1 1.9 1 1 0 1 1 1 1 AAA ATPase domain Mg_chelatase PF01078.21 EME69808.1 - 0.00056 19.3 0.5 0.37 10.1 0.1 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA PF00004.29 EME69808.1 - 0.00057 20.3 0.0 0.0014 19.0 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.22 EME69808.1 - 0.024 13.8 0.0 0.1 11.8 0.0 1.9 3 0 0 3 3 3 0 NB-ARC domain AAA_30 PF13604.6 EME69808.1 - 0.025 14.3 0.0 0.052 13.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain FleQ PF06490.11 EME69808.1 - 0.041 14.2 0.0 0.076 13.4 0.0 1.5 1 0 0 1 1 1 0 Flagellar regulatory protein FleQ B12-binding PF02310.19 EME69808.1 - 0.049 13.7 0.0 0.15 12.1 0.0 1.8 1 0 0 1 1 1 0 B12 binding domain AAA_18 PF13238.6 EME69808.1 - 0.069 13.7 0.0 0.22 12.1 0.0 1.9 1 0 0 1 1 1 0 AAA domain RNA12 PF10443.9 EME69808.1 - 0.17 10.6 0.0 0.25 10.0 0.0 1.2 1 0 0 1 1 1 0 RNA12 protein AAA_19 PF13245.6 EME69808.1 - 0.24 11.7 1.9 0.57 10.5 0.2 2.4 2 1 0 2 2 1 0 AAA domain TrkA_N PF02254.18 EME69809.1 - 5.3e-52 175.0 7.2 2.3e-27 95.6 0.1 2.8 3 0 0 3 3 3 2 TrkA-N domain TrkA_C PF02080.21 EME69809.1 - 2.5e-27 94.5 1.6 9.4e-16 57.4 0.1 2.7 2 1 0 2 2 2 2 TrkA-C domain NAD_binding_7 PF13241.6 EME69809.1 - 1.4e-08 35.1 3.0 0.00094 19.6 0.3 2.6 2 0 0 2 2 2 2 Putative NAD(P)-binding XdhC_C PF13478.6 EME69809.1 - 5.2e-08 33.4 1.3 0.0068 16.9 0.1 2.5 2 0 0 2 2 2 2 XdhC Rossmann domain Pyr_redox PF00070.27 EME69809.1 - 5.4e-08 33.3 2.4 0.0013 19.3 0.1 3.1 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 EME69809.1 - 1e-07 31.5 0.6 0.0067 15.7 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase F420_oxidored PF03807.17 EME69809.1 - 1.7e-07 31.7 3.4 0.0049 17.4 0.4 3.1 3 0 0 3 3 2 2 NADP oxidoreductase coenzyme F420-dependent NAD_binding_10 PF13460.6 EME69809.1 - 1.8e-06 28.0 4.2 0.00064 19.7 0.3 2.3 2 0 0 2 2 2 2 NAD(P)H-binding DAO PF01266.24 EME69809.1 - 2.2e-06 27.5 0.4 0.019 14.6 0.0 2.4 2 0 0 2 2 2 2 FAD dependent oxidoreductase GFO_IDH_MocA PF01408.22 EME69809.1 - 3.3e-06 27.9 1.5 0.0021 18.9 0.1 2.7 3 0 0 3 3 2 1 Oxidoreductase family, NAD-binding Rossmann fold AlaDh_PNT_C PF01262.21 EME69809.1 - 1.4e-05 24.5 5.6 0.0013 18.1 0.8 2.3 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.18 EME69809.1 - 2e-05 24.5 2.6 0.0013 18.6 0.2 2.3 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.16 EME69809.1 - 2.3e-05 24.1 0.6 0.026 14.2 0.1 2.7 2 0 0 2 2 2 2 Ketopantoate reductase PanE/ApbA Sacchrp_dh_NADP PF03435.18 EME69809.1 - 2.5e-05 24.6 2.2 0.098 12.9 0.2 2.6 2 0 0 2 2 2 2 Saccharopine dehydrogenase NADP binding domain HI0933_like PF03486.14 EME69809.1 - 2.8e-05 23.0 0.2 0.044 12.5 0.0 2.2 2 0 0 2 2 2 2 HI0933-like protein Shikimate_DH PF01488.20 EME69809.1 - 6.4e-05 23.0 1.5 0.15 12.1 0.1 2.5 2 1 0 2 2 2 2 Shikimate / quinate 5-dehydrogenase Lycopene_cycl PF05834.12 EME69809.1 - 0.00013 21.2 0.1 0.056 12.5 0.1 2.2 2 0 0 2 2 2 2 Lycopene cyclase protein Ldh_1_N PF00056.23 EME69809.1 - 0.00014 22.0 3.0 0.055 13.6 0.5 2.3 2 0 0 2 2 2 2 lactate/malate dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 EME69809.1 - 0.00014 21.9 0.6 0.05 13.6 0.1 2.5 2 1 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DUF1188 PF06690.11 EME69809.1 - 0.00031 20.4 0.2 0.13 11.8 0.1 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF1188) Castor_Poll_mid PF06241.12 EME69809.1 - 0.00067 19.6 0.0 1 9.4 0.0 2.6 2 0 0 2 2 2 2 Castor and Pollux, part of voltage-gated ion channel NAD_binding_8 PF13450.6 EME69809.1 - 0.00069 19.8 0.0 0.16 12.2 0.0 2.5 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain UDPG_MGDP_dh_N PF03721.14 EME69809.1 - 0.00083 19.0 0.3 0.046 13.3 0.1 2.5 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Thi4 PF01946.17 EME69809.1 - 0.00091 18.5 0.3 1.3 8.2 0.0 2.4 2 0 0 2 2 2 2 Thi4 family NAD_binding_2 PF03446.15 EME69809.1 - 0.0017 18.5 1.2 0.068 13.3 0.2 2.4 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase OCD_Mu_crystall PF02423.15 EME69809.1 - 0.0028 16.6 1.5 0.058 12.3 0.2 2.1 2 0 0 2 2 2 1 Ornithine cyclodeaminase/mu-crystallin family AA_kinase PF00696.28 EME69809.1 - 0.015 14.9 3.3 0.15 11.7 0.2 2.5 2 1 0 2 2 2 0 Amino acid kinase family FAD_binding_3 PF01494.19 EME69809.1 - 0.043 13.0 0.1 4.9 6.3 0.0 2.2 2 0 0 2 2 2 0 FAD binding domain adh_short PF00106.25 EME69809.1 - 0.054 13.0 1.1 4.4 6.7 0.0 2.3 2 0 0 2 2 2 0 short chain dehydrogenase Epimerase PF01370.21 EME69809.1 - 0.06 12.8 0.5 0.35 10.3 0.1 2.1 2 0 0 2 2 2 0 NAD dependent epimerase/dehydratase family LYTB PF02401.18 EME69809.1 - 0.085 12.1 0.1 0.36 10.0 0.0 1.9 2 0 0 2 2 2 0 LytB protein 2-Hacid_dh_C PF02826.19 EME69809.1 - 0.1 12.0 0.1 6.9 6.0 0.0 2.3 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HAD_2 PF13419.6 EME69810.1 - 5.7e-30 104.7 0.0 6.5e-30 104.5 0.0 1.0 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase HAD PF12710.7 EME69810.1 - 2.6e-08 34.5 0.3 4.5e-08 33.7 0.3 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 EME69810.1 - 1e-06 29.2 0.1 1e-05 25.9 0.1 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 EME69810.1 - 0.011 15.8 0.0 0.022 14.8 0.0 1.5 1 1 0 1 1 1 0 HAD-hyrolase-like Hydrolase_6 PF13344.6 EME69810.1 - 0.038 14.1 0.0 0.074 13.2 0.0 1.4 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Hfq PF17209.3 EME69811.1 - 5.2e-33 112.5 0.1 6.1e-33 112.3 0.1 1.1 1 0 0 1 1 1 1 Hfq protein GTP-bdg_M PF16360.5 EME69812.1 - 6.9e-30 103.5 3.4 6.9e-30 103.5 3.4 2.1 2 0 0 2 2 2 1 GTP-binding GTPase Middle Region GTP-bdg_N PF13167.6 EME69812.1 - 8.4e-26 90.5 0.0 2.5e-25 88.9 0.0 1.8 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal MMR_HSR1 PF01926.23 EME69812.1 - 1.2e-19 70.5 0.0 3.4e-19 69.0 0.0 1.8 2 0 0 2 2 2 1 50S ribosome-binding GTPase FeoB_N PF02421.18 EME69812.1 - 3.8e-05 23.3 0.3 9.7e-05 21.9 0.2 1.8 2 1 0 2 2 2 1 Ferrous iron transport protein B RsgA_GTPase PF03193.16 EME69812.1 - 7.4e-05 22.7 0.0 0.14 12.1 0.0 2.3 2 0 0 2 2 2 2 RsgA GTPase Dynamin_N PF00350.23 EME69812.1 - 0.0037 17.4 0.0 0.011 15.8 0.0 1.8 1 1 0 1 1 1 1 Dynamin family AAA_16 PF13191.6 EME69812.1 - 0.0045 17.4 0.2 0.019 15.4 0.3 2.2 2 1 0 2 2 2 1 AAA ATPase domain cobW PF02492.19 EME69812.1 - 0.0082 15.8 1.0 1.4 8.5 0.2 2.4 1 1 1 2 2 2 2 CobW/HypB/UreG, nucleotide-binding domain ABC_tran PF00005.27 EME69812.1 - 0.029 14.9 0.0 0.078 13.5 0.0 1.7 1 0 0 1 1 1 0 ABC transporter GTP_EFTU PF00009.27 EME69812.1 - 0.057 13.0 0.1 8.1 5.9 0.0 2.7 2 1 0 2 2 2 0 Elongation factor Tu GTP binding domain Arf PF00025.21 EME69812.1 - 0.069 12.6 0.3 0.66 9.4 0.3 2.3 1 1 0 1 1 1 0 ADP-ribosylation factor family SRPRB PF09439.10 EME69812.1 - 0.077 12.4 0.0 0.2 11.0 0.0 1.7 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit PduV-EutP PF10662.9 EME69812.1 - 0.15 11.8 0.0 25 4.6 0.0 2.7 2 1 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Inositol_P PF00459.25 EME69813.1 - 3.2e-42 144.9 0.1 9.1e-42 143.4 0.1 1.6 1 1 0 1 1 1 1 Inositol monophosphatase family MCR_alpha_N PF02745.15 EME69813.1 - 0.057 12.8 0.3 0.096 12.0 0.1 1.4 2 0 0 2 2 2 0 Methyl-coenzyme M reductase alpha subunit, N-terminal domain ParE_toxin PF05016.15 EME69814.1 - 5.2e-13 49.4 0.3 5.8e-13 49.3 0.3 1.0 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE ParD_antitoxin PF03693.14 EME69815.1 - 0.002 18.5 0.1 0.0025 18.2 0.1 1.2 1 0 0 1 1 1 1 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH RHH_1 PF01402.21 EME69815.1 - 0.052 13.5 0.0 0.11 12.5 0.0 1.5 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family ABC_membrane PF00664.23 EME69816.1 - 2e-29 103.1 5.7 2.9e-29 102.6 5.7 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 EME69816.1 - 8.8e-27 94.3 0.0 1.4e-26 93.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_16 PF13191.6 EME69816.1 - 0.0017 18.8 0.0 0.0032 17.9 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 EME69816.1 - 0.0043 16.8 0.1 0.011 15.5 0.1 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 EME69816.1 - 0.0045 17.5 0.5 0.0075 16.8 0.5 1.2 1 0 0 1 1 1 1 AAA domain T2SSE PF00437.20 EME69816.1 - 0.02 14.0 0.1 0.037 13.1 0.1 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein NACHT PF05729.12 EME69816.1 - 0.033 14.1 0.4 0.73 9.7 0.2 2.2 2 0 0 2 2 2 0 NACHT domain Zeta_toxin PF06414.12 EME69816.1 - 0.039 13.2 0.0 0.072 12.4 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_28 PF13521.6 EME69816.1 - 0.047 13.9 0.0 0.089 13.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 EME69816.1 - 0.12 12.0 0.2 0.17 11.6 0.2 1.1 1 0 0 1 1 1 0 AAA ATPase domain DLIC PF05783.11 EME69816.1 - 0.18 10.6 0.1 0.28 10.0 0.1 1.2 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) KAP_NTPase PF07693.14 EME69816.1 - 0.2 10.9 0.0 0.29 10.3 0.0 1.3 1 0 0 1 1 1 0 KAP family P-loop domain SMC_N PF02463.19 EME69816.1 - 0.23 10.8 0.1 4.6 6.6 0.1 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 EME69816.1 - 0.24 11.2 0.0 0.38 10.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system ABC_tran PF00005.27 EME69817.1 - 9.5e-25 87.7 0.0 1.5e-24 87.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.23 EME69817.1 - 3.2e-22 79.5 10.5 4.6e-22 79.0 10.5 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region AAA_21 PF13304.6 EME69817.1 - 3.9e-09 36.8 0.0 0.0015 18.4 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 EME69817.1 - 1.9e-06 27.5 0.0 0.022 14.2 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 EME69817.1 - 0.00019 21.1 0.0 0.00041 20.0 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain Zeta_toxin PF06414.12 EME69817.1 - 0.00056 19.3 0.0 0.001 18.4 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin AAA_15 PF13175.6 EME69817.1 - 0.0015 18.3 0.0 0.0024 17.6 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 EME69817.1 - 0.0062 17.1 0.0 0.01 16.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 EME69817.1 - 0.02 14.6 0.0 0.039 13.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain Peptidase_C39 PF03412.15 EME69817.1 - 0.026 14.3 0.0 0.045 13.6 0.0 1.3 1 0 0 1 1 1 0 Peptidase C39 family AAA_16 PF13191.6 EME69817.1 - 0.04 14.3 0.0 0.081 13.3 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain FtsK_SpoIIIE PF01580.18 EME69817.1 - 0.17 11.2 0.2 1.1 8.6 0.0 2.2 3 0 0 3 3 3 0 FtsK/SpoIIIE family AAA_14 PF13173.6 EME69817.1 - 0.22 11.6 0.0 2.3 8.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain HlyD_3 PF13437.6 EME69818.1 - 2.9e-17 63.3 1.7 1.7e-14 54.4 0.1 2.9 3 0 0 3 3 3 2 HlyD family secretion protein HlyD PF00529.20 EME69818.1 - 4.8e-06 26.4 0.1 7.4e-06 25.8 0.1 1.3 1 0 0 1 1 1 1 HlyD membrane-fusion protein of T1SS HlyD_D23 PF16576.5 EME69818.1 - 9.3e-05 21.7 9.1 0.00014 21.2 1.6 2.6 1 1 1 2 2 2 2 Barrel-sandwich domain of CusB or HlyD membrane-fusion Biotin_lipoyl PF00364.22 EME69818.1 - 0.0052 16.6 5.8 0.12 12.3 0.1 3.9 3 2 1 4 4 4 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 EME69818.1 - 0.0065 16.3 4.4 0.034 14.0 0.4 3.4 3 0 0 3 3 3 1 Biotin-lipoyl like CSD2 PF17876.1 EME69818.1 - 0.016 15.3 0.8 0.091 12.9 0.1 2.6 3 0 0 3 3 3 0 Cold shock domain DUF5082 PF16888.5 EME69818.1 - 8.6 6.7 7.0 8.3 6.7 0.2 3.0 2 1 1 3 3 3 0 Domain of unknown function (DUF5082) SSB PF00436.25 EME69819.1 - 5.6e-39 132.4 0.7 7e-39 132.1 0.7 1.1 1 0 0 1 1 1 1 Single-strand binding protein family GRP PF07172.11 EME69819.1 - 0.23 12.2 26.4 0.37 11.5 26.4 1.3 1 0 0 1 1 1 0 Glycine rich protein family DNA_topoisoIV PF00521.20 EME69821.1 - 2.7e-150 501.0 0.0 3.6e-150 500.6 0.0 1.1 1 0 0 1 1 1 1 DNA gyrase/topoisomerase IV, subunit A DNA_gyraseA_C PF03989.13 EME69821.1 - 4e-70 231.1 15.2 5.6e-15 54.6 0.2 7.1 7 0 0 7 7 7 6 DNA gyrase C-terminal domain, beta-propeller CTP_transf_like PF01467.26 EME69822.1 - 3.2e-17 63.1 0.0 4e-17 62.7 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase-like Citrate_ly_lig PF08218.11 EME69822.1 - 0.073 12.8 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 Citrate lyase ligase C-terminal domain YscJ_FliF_C PF08345.11 EME69822.1 - 0.096 13.0 0.1 0.14 12.5 0.1 1.1 1 0 0 1 1 1 0 Flagellar M-ring protein C-terminal Pro_isomerase PF00160.21 EME69823.1 - 2.8e-44 151.1 0.0 3.3e-44 150.9 0.0 1.0 1 0 0 1 1 1 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Pro_isomerase PF00160.21 EME69824.1 - 4.8e-45 153.7 0.0 5.6e-45 153.5 0.0 1.0 1 0 0 1 1 1 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD FUSC PF04632.12 EME69825.1 - 0.0062 15.1 2.7 0.0067 15.0 2.7 1.0 1 0 0 1 1 1 1 Fusaric acid resistance protein family CENP-H PF05837.12 EME69825.1 - 0.0081 16.6 0.7 0.0099 16.3 0.7 1.2 1 0 0 1 1 1 1 Centromere protein H (CENP-H) MutS_II PF05188.17 EME69825.1 - 0.0096 16.2 0.1 0.013 15.8 0.1 1.2 1 0 0 1 1 1 1 MutS domain II SKA2 PF16740.5 EME69825.1 - 0.013 15.3 1.9 0.019 14.7 1.6 1.4 1 1 0 1 1 1 0 Spindle and kinetochore-associated protein 2 APG6_N PF17675.1 EME69825.1 - 0.014 15.9 1.2 0.02 15.4 1.2 1.3 1 0 0 1 1 1 0 Apg6 coiled-coil region Golgin_A5 PF09787.9 EME69825.1 - 0.019 14.4 1.3 0.02 14.3 1.3 1.0 1 0 0 1 1 1 0 Golgin subfamily A member 5 RecR PF02132.15 EME69825.1 - 0.019 14.5 0.2 0.059 12.9 0.0 1.9 2 0 0 2 2 2 0 RecR protein DUF4344 PF14247.6 EME69825.1 - 0.029 14.1 0.1 0.035 13.8 0.1 1.2 1 0 0 1 1 1 0 Putative metallopeptidase CDT1_C PF16679.5 EME69825.1 - 0.044 14.2 0.7 0.068 13.6 0.6 1.3 1 1 0 1 1 1 0 DNA replication factor Cdt1 C-terminal domain TMF_TATA_bd PF12325.8 EME69825.1 - 0.047 13.9 2.1 0.067 13.4 2.1 1.2 1 0 0 1 1 1 0 TATA element modulatory factor 1 TATA binding zf-CpG_bind_C PF12269.8 EME69825.1 - 0.075 12.8 0.3 0.092 12.5 0.3 1.1 1 0 0 1 1 1 0 CpG binding protein zinc finger C terminal domain Fez1 PF06818.15 EME69825.1 - 0.076 13.5 1.3 0.086 13.3 1.3 1.1 1 0 0 1 1 1 0 Fez1 IFT57 PF10498.9 EME69825.1 - 0.077 12.0 0.1 0.088 11.8 0.1 1.1 1 0 0 1 1 1 0 Intra-flagellar transport protein 57 Osmo_CC PF08946.10 EME69825.1 - 0.091 13.0 2.8 3.4 8.0 0.1 2.9 3 0 0 3 3 3 0 Osmosensory transporter coiled coil phiKZ_IP PF12699.7 EME69825.1 - 0.11 11.6 0.0 0.14 11.3 0.0 1.1 1 0 0 1 1 1 0 phiKZ-like phage internal head proteins DUF2203 PF09969.9 EME69825.1 - 0.17 12.6 2.0 0.4 11.4 1.7 1.7 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) YabA PF06156.13 EME69825.1 - 0.34 11.6 2.1 0.62 10.7 2.2 1.5 1 1 0 1 1 1 0 Initiation control protein YabA DUF559 PF04480.12 EME69826.1 - 3.5e-26 91.2 0.0 4.1e-26 91.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF559) MTES_1575 PF18741.1 EME69826.1 - 0.00025 21.1 0.0 0.00032 20.8 0.0 1.2 1 0 0 1 1 1 1 REase_MTES_1575 Vsr PF03852.15 EME69826.1 - 0.092 12.6 0.0 0.11 12.4 0.0 1.1 1 0 0 1 1 1 0 DNA mismatch endonuclease Vsr BATS PF06968.13 EME69827.1 - 3.4e-18 65.6 0.0 6.2e-18 64.7 0.0 1.5 1 0 0 1 1 1 1 Biotin and Thiamin Synthesis associated domain Radical_SAM PF04055.21 EME69827.1 - 1.3e-15 58.1 0.1 2.1e-15 57.5 0.1 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Aminotran_1_2 PF00155.21 EME69828.1 - 2.3e-53 181.6 0.0 2.6e-53 181.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 EME69828.1 - 4.3e-05 22.2 0.0 5.9e-05 21.8 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 EME69828.1 - 0.017 14.4 0.1 0.032 13.5 0.1 1.4 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 EME69828.1 - 0.018 14.3 0.0 0.027 13.8 0.0 1.3 1 1 0 1 1 1 0 Beta-eliminating lyase SHMT PF00464.19 EME69828.1 - 0.059 12.0 0.0 0.085 11.4 0.0 1.3 1 1 0 1 1 1 0 Serine hydroxymethyltransferase Abhydrolase_6 PF12697.7 EME69829.1 - 1.5e-07 32.3 9.1 1.5e-07 32.3 9.1 2.1 1 1 1 2 2 2 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 EME69829.1 - 0.0038 16.9 0.0 0.16 11.6 0.0 2.2 1 1 0 2 2 2 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 EME69829.1 - 0.026 13.8 0.0 0.49 9.6 0.0 2.2 1 1 0 1 1 1 0 Serine aminopeptidase, S33 Methyltransf_23 PF13489.6 EME69830.1 - 4.6e-14 52.6 0.0 6.2e-14 52.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 EME69830.1 - 1.1e-13 51.7 0.0 2e-13 50.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 EME69830.1 - 2.1e-13 50.7 0.0 3.5e-13 50.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 EME69830.1 - 4.7e-13 49.7 0.0 7.4e-13 49.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 EME69830.1 - 3e-09 36.8 0.0 4.9e-09 36.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 EME69830.1 - 0.00014 21.3 0.0 0.0003 20.2 0.0 1.4 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.14 EME69830.1 - 0.0031 17.1 0.1 0.0053 16.3 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 EME69830.1 - 0.013 14.9 0.0 0.018 14.5 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) NodS PF05401.11 EME69830.1 - 0.02 14.5 0.0 0.029 14.0 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) PCMT PF01135.19 EME69830.1 - 0.041 13.6 0.0 0.085 12.6 0.0 1.4 1 1 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_16 PF10294.9 EME69830.1 - 0.049 13.4 0.0 0.074 12.8 0.0 1.2 1 0 0 1 1 1 0 Lysine methyltransferase AAA_26 PF13500.6 EME69831.1 - 4.5e-56 189.8 0.0 5e-56 189.7 0.0 1.0 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 EME69831.1 - 0.031 14.3 0.0 0.68 10.0 0.0 2.1 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain DUF1611 PF07755.11 EME69831.1 - 0.12 11.6 0.1 0.61 9.3 0.0 2.1 2 1 0 2 2 2 0 Domain of unknown function (DUF1611_C) P-loop domain Aminotran_3 PF00202.21 EME69832.1 - 5.5e-105 351.3 0.0 6.5e-105 351.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III AstE_AspA PF04952.14 EME69832.1 - 0.027 13.6 0.0 0.046 12.8 0.0 1.3 1 0 0 1 1 1 0 Succinylglutamate desuccinylase / Aspartoacylase family HlyD_D23 PF16576.5 EME69833.1 - 1.2e-25 90.0 0.6 1.6e-25 89.6 0.6 1.1 1 0 0 1 1 1 1 Barrel-sandwich domain of CusB or HlyD membrane-fusion HlyD_3 PF13437.6 EME69833.1 - 2.4e-19 70.0 0.3 2e-15 57.4 0.2 2.4 2 0 0 2 2 2 2 HlyD family secretion protein Biotin_lipoyl_2 PF13533.6 EME69833.1 - 3e-11 43.0 0.1 2.4e-10 40.1 0.0 2.6 3 0 0 3 3 3 1 Biotin-lipoyl like HlyD PF00529.20 EME69833.1 - 1.5e-08 34.4 1.8 1.9e-08 34.0 0.1 2.0 3 0 0 3 3 3 1 HlyD membrane-fusion protein of T1SS Biotin_lipoyl PF00364.22 EME69833.1 - 0.0073 16.1 0.0 0.029 14.2 0.0 2.1 1 0 0 1 1 1 1 Biotin-requiring enzyme TruB-C_2 PF09157.11 EME69833.1 - 0.047 13.7 0.3 5.3 7.2 0.0 3.6 3 2 1 4 4 4 0 Pseudouridine synthase II TruB, C-terminal DUF4131 PF13567.6 EME69833.1 - 0.048 13.3 0.7 1.3 8.7 0.1 2.9 3 1 0 3 3 3 0 Domain of unknown function (DUF4131) HemX PF04375.14 EME69833.1 - 0.17 11.2 2.3 4.5 6.5 0.2 2.2 2 0 0 2 2 2 0 HemX, putative uroporphyrinogen-III C-methyltransferase FtsX PF02687.21 EME69834.1 - 1.6e-14 54.2 0.3 1.6e-14 54.2 0.3 2.9 3 0 0 3 3 3 1 FtsX-like permease family MacB_PCD PF12704.7 EME69834.1 - 5.9e-14 52.9 0.8 1.1e-13 52.0 0.8 1.4 1 0 0 1 1 1 1 MacB-like periplasmic core domain DUF4131 PF13567.6 EME69834.1 - 0.048 13.3 2.0 0.15 11.7 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) Yip1 PF04893.17 EME69834.1 - 0.19 11.4 5.5 0.58 9.9 3.3 2.2 2 0 0 2 2 2 0 Yip1 domain ABC_tran PF00005.27 EME69835.1 - 2.1e-30 106.0 0.0 2.9e-30 105.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 EME69835.1 - 6.8e-10 39.2 0.8 0.00011 22.1 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 EME69835.1 - 1.1e-08 34.8 0.0 8.4e-05 22.1 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 EME69835.1 - 0.00014 22.3 6.7 0.0013 19.1 6.7 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 EME69835.1 - 0.00084 19.0 0.0 0.0015 18.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain IstB_IS21 PF01695.17 EME69835.1 - 0.0046 16.7 0.1 0.8 9.4 0.0 2.5 2 1 0 2 2 2 1 IstB-like ATP binding protein AAA_25 PF13481.6 EME69835.1 - 0.0058 16.2 1.4 0.053 13.1 0.0 2.3 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.6 EME69835.1 - 0.006 16.9 0.3 0.16 12.3 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 EME69835.1 - 0.044 14.3 0.2 0.95 10.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 EME69835.1 - 0.081 12.6 0.0 0.22 11.2 0.0 1.8 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 EME69835.1 - 0.11 12.4 0.0 0.19 11.6 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase RNA12 PF10443.9 EME69835.1 - 0.12 11.1 0.0 0.2 10.3 0.0 1.3 1 0 0 1 1 1 0 RNA12 protein AAA_23 PF13476.6 EME69835.1 - 0.21 12.1 0.0 0.35 11.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 EME69835.1 - 0.88 9.7 4.7 12 6.0 4.7 2.4 1 1 0 1 1 1 0 AAA domain Response_reg PF00072.24 EME69836.1 - 1.3e-20 73.6 0.0 2.1e-20 73.0 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain GerE PF00196.19 EME69836.1 - 3.4e-19 68.1 0.1 5.1e-19 67.6 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 EME69836.1 - 3.6e-08 32.9 0.5 9.1e-08 31.7 0.3 1.8 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 EME69836.1 - 0.00087 18.8 0.1 0.0021 17.5 0.1 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_40 PF14493.6 EME69836.1 - 0.0027 18.1 0.1 0.0051 17.2 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 EME69836.1 - 0.0028 17.4 0.0 0.011 15.6 0.0 1.9 1 1 1 2 2 2 1 Homeodomain-like domain MarR_2 PF12802.7 EME69836.1 - 0.0077 16.1 0.6 0.15 12.0 0.0 2.8 2 1 1 3 3 3 1 MarR family HTH_20 PF12840.7 EME69836.1 - 0.011 15.8 0.4 0.027 14.5 0.3 1.8 1 1 0 1 1 1 0 Helix-turn-helix domain CENP-B_N PF04218.13 EME69836.1 - 0.025 14.2 0.1 0.13 12.0 0.0 2.0 1 1 1 2 2 2 0 CENP-B N-terminal DNA-binding domain HTH_38 PF13936.6 EME69836.1 - 0.027 14.2 0.0 0.068 12.9 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_7 PF02796.15 EME69836.1 - 0.052 13.6 0.0 0.12 12.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_28 PF13518.6 EME69836.1 - 0.1 12.7 0.3 1.8 8.8 0.0 2.3 1 1 1 2 2 2 0 Helix-turn-helix domain DUF2089 PF09862.9 EME69836.1 - 0.12 12.5 0.0 0.22 11.5 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2089) HTH_24 PF13412.6 EME69836.1 - 0.17 11.5 0.3 0.53 9.9 0.1 1.9 1 1 1 2 2 2 0 Winged helix-turn-helix DNA-binding MobB PF03205.14 EME69837.1 - 5.5e-36 123.4 0.0 6.6e-36 123.1 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B MeaB PF03308.16 EME69837.1 - 0.00026 20.0 0.1 0.00036 19.6 0.1 1.2 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB CbiA PF01656.23 EME69837.1 - 0.00032 20.7 0.0 0.00035 20.6 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain cobW PF02492.19 EME69837.1 - 0.00071 19.2 0.0 0.00093 18.8 0.0 1.5 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain PRK PF00485.18 EME69837.1 - 0.0063 16.3 0.0 0.0085 15.8 0.0 1.2 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family AAA_16 PF13191.6 EME69837.1 - 0.013 15.9 0.1 0.022 15.2 0.0 1.3 1 1 0 1 1 1 0 AAA ATPase domain NTPase_1 PF03266.15 EME69837.1 - 0.016 15.2 0.0 0.024 14.5 0.0 1.2 1 0 0 1 1 1 0 NTPase NACHT PF05729.12 EME69837.1 - 0.032 14.1 0.1 0.079 12.9 0.2 1.6 2 0 0 2 2 2 0 NACHT domain AAA_25 PF13481.6 EME69837.1 - 0.047 13.3 0.5 1.6 8.3 0.1 2.7 3 0 0 3 3 3 0 AAA domain AAA_22 PF13401.6 EME69837.1 - 0.047 14.0 0.0 0.068 13.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 EME69837.1 - 0.048 13.4 0.2 0.076 12.7 0.2 1.4 1 0 0 1 1 1 0 AAA domain DUF463 PF04317.12 EME69837.1 - 0.052 12.5 0.0 0.07 12.0 0.0 1.1 1 0 0 1 1 1 0 YcjX-like family, DUF463 AAA_33 PF13671.6 EME69837.1 - 0.055 13.6 0.0 0.077 13.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 EME69837.1 - 0.055 14.0 0.0 0.077 13.5 0.0 1.3 1 0 0 1 1 1 0 ABC transporter RsgA_GTPase PF03193.16 EME69837.1 - 0.056 13.4 0.0 0.078 12.9 0.0 1.2 1 0 0 1 1 1 0 RsgA GTPase MMR_HSR1 PF01926.23 EME69837.1 - 0.068 13.3 0.0 0.49 10.5 0.0 2.0 2 0 0 2 2 2 0 50S ribosome-binding GTPase TAFA PF12020.8 EME69837.1 - 0.1 13.0 0.0 0.17 12.3 0.0 1.3 1 0 0 1 1 1 0 TAFA family AAA_29 PF13555.6 EME69837.1 - 0.13 12.0 0.1 0.26 11.1 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.6 EME69837.1 - 0.18 12.3 0.0 0.23 11.9 0.0 1.1 1 0 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.17 EME69837.1 - 0.21 11.3 0.0 0.29 10.9 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein MipZ PF09140.11 EME69837.1 - 0.25 10.6 0.1 0.36 10.1 0.1 1.2 1 0 0 1 1 1 0 ATPase MipZ LpxK PF02606.14 EME69837.1 - 0.26 10.3 0.7 0.75 8.8 0.7 1.8 1 1 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase MCPsignal PF00015.21 EME69838.1 - 9.1e-28 97.2 17.1 9.1e-28 97.2 17.1 3.6 3 1 1 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 EME69838.1 - 3.6e-10 40.1 0.2 3.6e-10 40.1 0.2 5.3 5 1 0 5 5 5 1 HAMP domain DUF948 PF06103.11 EME69838.1 - 0.00013 22.1 5.7 1.5 9.1 0.1 5.5 5 1 0 5 5 5 2 Bacterial protein of unknown function (DUF948) Serine_rich PF08824.10 EME69838.1 - 1.5 8.8 3.8 19 5.2 0.1 3.7 4 0 0 4 4 4 0 Serine rich protein interaction domain DUF2023 PF09633.10 EME69839.1 - 1.2e-40 137.7 0.0 1.4e-40 137.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2023) Trp_repressor PF01371.19 EME69839.1 - 0.16 12.1 0.5 1.4 9.1 0.1 2.1 2 0 0 2 2 2 0 Trp repressor protein Flavodoxin_1 PF00258.25 EME69840.1 - 4.1e-20 72.4 0.2 4.8e-20 72.2 0.2 1.0 1 0 0 1 1 1 1 Flavodoxin Flavodoxin_5 PF12724.7 EME69840.1 - 8.9e-07 29.2 0.0 1.1e-06 28.9 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_3 PF12641.7 EME69840.1 - 0.00012 21.8 0.0 0.00016 21.4 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_4 PF12682.7 EME69840.1 - 0.028 14.1 0.1 0.05 13.3 0.1 1.4 1 0 0 1 1 1 0 Flavodoxin RMMBL PF07521.12 EME69841.1 - 2.1e-12 46.8 0.3 2.3e-10 40.2 0.1 2.8 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 EME69841.1 - 9.2e-12 45.4 0.4 2.1e-11 44.2 0.4 1.6 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 EME69841.1 - 1.5e-11 44.2 0.2 5.2e-10 39.2 0.1 2.3 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Pan_kinase PF03309.14 EME69842.1 - 1.4e-72 243.9 0.0 2.1e-72 243.3 0.0 1.3 1 0 0 1 1 1 1 Type III pantothenate kinase BPL_LplA_LipB PF03099.19 EME69843.1 - 1.5e-17 63.7 0.0 2.1e-17 63.3 0.0 1.1 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family BPL_LplA_LipB_2 PF16917.5 EME69843.1 - 1.7e-16 60.3 0.6 3.9e-16 59.1 0.5 1.7 1 1 0 1 1 1 1 Biotin/lipoate A/B protein ligase family BPL_C PF02237.17 EME69843.1 - 0.00011 22.1 0.9 0.00023 21.0 0.9 1.6 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain DUF4444 PF14563.6 EME69843.1 - 0.016 14.8 1.1 0.023 14.4 0.2 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4444) Proton_antipo_M PF00361.20 EME69844.1 - 9.2e-86 287.7 20.6 9.2e-86 287.7 20.6 2.1 3 0 0 3 3 3 1 Proton-conducting membrane transporter Proton_antipo_M PF00361.20 EME69845.1 - 2.6e-89 299.3 29.1 2.6e-89 299.3 29.1 2.1 1 1 1 2 2 2 1 Proton-conducting membrane transporter Oxidored_q5_N PF01059.17 EME69845.1 - 7.9e-06 25.9 3.3 7.9e-06 25.9 3.3 4.2 4 1 0 4 4 4 1 NADH-ubiquinone oxidoreductase chain 4, amino terminus Proton_antipo_M PF00361.20 EME69846.1 - 4.3e-94 315.0 19.3 9.8e-94 313.8 19.3 1.7 1 0 0 1 1 1 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 EME69846.1 - 7.7e-22 77.1 8.4 1.7e-21 76.0 3.2 3.2 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NADH5_C PF06455.11 EME69846.1 - 1.3e-08 34.7 12.0 0.00033 20.3 0.0 4.4 4 0 0 4 4 4 2 NADH dehydrogenase subunit 5 C-terminus Proton_antipo_C PF01010.19 EME69846.1 - 7.5e-05 22.5 0.0 0.00015 21.5 0.0 1.4 1 0 0 1 1 1 1 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus FATC PF02260.20 EME69846.1 - 0.19 11.6 2.3 0.3 10.9 0.0 2.5 3 0 0 3 3 3 0 FATC domain Oxidored_q2 PF00420.24 EME69847.1 - 2.7e-24 84.8 12.4 3.2e-24 84.6 12.4 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Gram_pos_anchor PF00746.21 EME69847.1 - 0.7 9.9 5.4 2.8 8.0 0.2 2.3 2 0 0 2 2 2 0 LPXTG cell wall anchor motif Oxidored_q3 PF00499.20 EME69848.1 - 6.3e-40 136.2 22.2 9.4e-40 135.7 22.2 1.3 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 HTH_31 PF13560.6 EME69848.1 - 0.16 12.3 0.1 0.29 11.5 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Fer4 PF00037.27 EME69849.1 - 1.1e-14 53.5 15.8 6.4e-09 35.3 3.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 EME69849.1 - 6.3e-14 52.3 9.0 9.1e-14 51.8 9.0 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 EME69849.1 - 2.4e-11 44.4 4.6 1.3e-05 26.0 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 EME69849.1 - 1.4e-09 38.0 9.2 2.2e-09 37.3 9.2 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 EME69849.1 - 3.2e-09 36.8 21.6 1.8e-06 28.0 12.1 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 EME69849.1 - 4.2e-09 36.7 18.1 4.8e-06 26.9 10.4 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 EME69849.1 - 6.9e-09 35.7 21.7 5.4e-06 26.4 13.0 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 EME69849.1 - 3.4e-07 29.9 11.6 0.0014 18.6 1.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 EME69849.1 - 3.6e-07 30.0 17.5 0.00025 21.0 5.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 EME69849.1 - 2.7e-06 27.5 10.9 0.00032 21.0 2.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 EME69849.1 - 0.0001 22.8 12.2 0.014 15.9 12.9 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 EME69849.1 - 0.0039 18.0 16.5 0.0095 16.8 4.2 2.2 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_13 PF13370.6 EME69849.1 - 0.0047 17.4 14.6 0.25 11.9 3.6 2.5 2 1 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 EME69849.1 - 0.011 16.0 8.2 0.41 10.9 1.1 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain c-SKI_SMAD_bind PF08782.10 EME69849.1 - 0.012 15.9 4.7 0.67 10.2 0.4 2.2 1 1 1 2 2 2 0 c-SKI Smad4 binding domain Fer4_22 PF17179.4 EME69849.1 - 0.27 12.1 11.0 2 9.3 1.7 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain ETF_QO PF05187.13 EME69849.1 - 0.35 11.0 5.6 1.1 9.5 0.8 2.2 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S NADHdh PF00146.21 EME69850.1 - 5.7e-131 436.3 26.9 6.6e-131 436.0 26.9 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Molybdopterin PF00384.22 EME69851.1 - 4.8e-72 243.3 0.0 3e-71 240.6 0.0 2.0 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Fer2_4 PF13510.6 EME69851.1 - 9.6e-20 70.4 0.1 2.2e-19 69.3 0.1 1.7 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain NADH-G_4Fe-4S_3 PF10588.9 EME69851.1 - 3.3e-17 61.7 0.3 3.3e-17 61.7 0.3 1.7 2 0 0 2 2 2 1 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region NADH_dhqG_C PF09326.11 EME69851.1 - 1.2e-14 54.7 0.0 3.6e-14 53.2 0.0 1.8 1 0 0 1 1 1 1 NADH-ubiquinone oxidoreductase subunit G, C-terminal Fer2 PF00111.27 EME69851.1 - 4e-10 39.5 1.4 6.4e-10 38.9 0.3 2.0 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain TPP_enzyme_M PF00205.22 EME69851.1 - 0.011 15.5 1.2 0.11 12.2 0.1 2.6 2 1 0 2 2 2 0 Thiamine pyrophosphate enzyme, central domain Cys_rich_CWC PF14375.6 EME69851.1 - 3.1 8.3 5.7 7.2 7.1 5.7 1.7 1 0 0 1 1 1 0 Cysteine-rich CWC Complex1_51K PF01512.17 EME69852.1 - 1.4e-50 171.1 0.0 2.1e-50 170.6 0.0 1.2 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit NADH_4Fe-4S PF10589.9 EME69852.1 - 6.5e-29 99.9 0.1 1.3e-28 98.9 0.1 1.5 1 0 0 1 1 1 1 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region SLBB PF10531.9 EME69852.1 - 7.1e-10 38.6 0.0 1.5e-09 37.6 0.0 1.6 1 0 0 1 1 1 1 SLBB domain 2Fe-2S_thioredx PF01257.19 EME69853.1 - 9.2e-63 210.4 0.1 1.1e-62 210.2 0.1 1.0 1 0 0 1 1 1 1 Thioredoxin-like [2Fe-2S] ferredoxin Complex1_49kDa PF00346.19 EME69854.1 - 8.1e-127 421.9 0.0 1.2e-126 421.4 0.0 1.2 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.19 EME69854.1 - 0.0033 16.4 0.0 0.0062 15.5 0.0 1.4 1 0 0 1 1 1 1 Nickel-dependent hydrogenase Complex1_30kDa PF00329.19 EME69855.1 - 3.7e-48 163.2 0.0 4.6e-48 162.9 0.0 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Oxidored_q6 PF01058.22 EME69856.1 - 3e-22 78.8 0.1 4e-22 78.5 0.1 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit PPARgamma_N PF12577.8 EME69856.1 - 0.22 12.2 0.0 0.39 11.4 0.0 1.3 1 0 0 1 1 1 0 PPAR gamma N-terminal region Oxidored_q4 PF00507.19 EME69857.1 - 1.3e-39 134.4 2.9 1.3e-39 134.4 2.9 1.4 1 1 1 2 2 2 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Bac_DNA_binding PF00216.21 EME69858.1 - 6.4e-33 112.8 0.0 6.9e-33 112.7 0.0 1.0 1 0 0 1 1 1 1 Bacterial DNA-binding protein HU-HIG PF18291.1 EME69858.1 - 2.9e-05 24.2 0.0 2.9e-05 24.2 0.0 1.1 1 0 0 1 1 1 1 HU domain fused to wHTH, Ig, or Glycine-rich motif HU-CCDC81_euk_2 PF18289.1 EME69858.1 - 0.0028 17.8 0.0 0.0039 17.3 0.0 1.1 1 0 0 1 1 1 1 CCDC81 eukaryotic HU domain 2 HU-CCDC81_bac_2 PF18175.1 EME69858.1 - 0.0083 16.0 0.0 0.011 15.5 0.0 1.1 1 0 0 1 1 1 1 CCDC81-like prokaryotic HU domain 2 2C_adapt PF08793.10 EME69858.1 - 0.052 13.7 0.1 0.082 13.1 0.1 1.3 1 0 0 1 1 1 0 2-cysteine adaptor domain DUF2267 PF10025.9 EME69858.1 - 0.071 13.4 0.0 0.11 12.8 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2267) Lon_C PF05362.13 EME69859.1 - 1.5e-98 328.3 1.7 3.2e-98 327.3 1.1 1.8 2 0 0 2 2 2 1 Lon protease (S16) C-terminal proteolytic domain LON_substr_bdg PF02190.16 EME69859.1 - 1e-42 146.4 1.5 1e-42 146.4 1.5 1.8 2 0 0 2 2 2 1 ATP-dependent protease La (LON) substrate-binding domain AAA PF00004.29 EME69859.1 - 1.4e-20 74.1 0.0 4.8e-20 72.3 0.0 2.0 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 EME69859.1 - 6.3e-09 36.0 0.0 1.4e-08 34.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) ChlI PF13541.6 EME69859.1 - 5.5e-08 32.7 0.0 1.3e-07 31.5 0.0 1.7 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase AAA_PrkA PF08298.11 EME69859.1 - 1.2e-05 24.4 0.0 3e-05 23.1 0.0 1.6 1 0 0 1 1 1 1 PrkA AAA domain AAA_16 PF13191.6 EME69859.1 - 0.00097 19.6 3.8 0.0013 19.2 0.0 2.9 3 1 0 3 3 3 1 AAA ATPase domain RuvB_N PF05496.12 EME69859.1 - 0.0016 18.2 0.0 0.0043 16.8 0.0 1.7 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_18 PF13238.6 EME69859.1 - 0.0071 16.9 1.3 0.012 16.2 0.1 2.0 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.6 EME69859.1 - 0.0094 16.0 0.0 0.025 14.6 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 EME69859.1 - 0.0099 16.2 0.7 0.11 12.7 0.1 2.8 2 1 0 2 2 1 1 AAA domain IstB_IS21 PF01695.17 EME69859.1 - 0.033 13.9 0.0 0.078 12.7 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_33 PF13671.6 EME69859.1 - 0.037 14.2 0.1 0.1 12.8 0.1 1.8 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 EME69859.1 - 0.047 13.6 0.1 1.4 8.8 0.0 3.0 3 0 0 3 3 3 0 NACHT domain AAA_25 PF13481.6 EME69859.1 - 0.051 13.1 0.5 13 5.3 0.1 2.6 2 0 0 2 2 2 0 AAA domain AAA_3 PF07726.11 EME69859.1 - 0.058 13.3 0.0 0.15 11.9 0.0 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) TsaE PF02367.17 EME69859.1 - 0.11 12.5 0.1 0.37 10.8 0.0 2.0 2 0 0 2 2 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_19 PF13245.6 EME69859.1 - 0.18 12.1 1.4 5.7 7.3 0.1 3.0 3 0 0 3 3 3 0 AAA domain ABC_tran PF00005.27 EME69859.1 - 0.53 10.8 3.6 1 9.8 0.0 2.9 2 1 0 2 2 2 0 ABC transporter Laps PF10169.9 EME69859.1 - 2.1 9.0 8.3 4.4 7.9 3.1 2.5 1 1 1 2 2 2 0 Learning-associated protein AAA_2 PF07724.14 EME69860.1 - 2.4e-50 171.0 0.0 4.7e-50 170.0 0.0 1.5 2 0 0 2 2 1 1 AAA domain (Cdc48 subfamily) zf-C4_ClpX PF06689.13 EME69860.1 - 2.4e-20 72.1 3.8 6.7e-20 70.7 3.8 1.8 1 0 0 1 1 1 1 ClpX C4-type zinc finger AAA PF00004.29 EME69860.1 - 3.9e-17 62.9 0.0 1.1e-16 61.4 0.0 1.7 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) ClpB_D2-small PF10431.9 EME69860.1 - 1.8e-15 56.7 0.3 7.8e-15 54.7 0.2 2.0 2 0 0 2 2 2 1 C-terminal, D2-small domain, of ClpB protein AAA_5 PF07728.14 EME69860.1 - 1e-06 28.8 0.0 1.1e-05 25.5 0.1 2.4 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.21 EME69860.1 - 1.6e-06 27.7 0.5 0.00037 19.9 0.7 2.9 1 1 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_22 PF13401.6 EME69860.1 - 4.6e-06 27.0 0.2 7.7e-05 23.0 0.2 2.5 1 1 0 1 1 1 1 AAA domain RuvB_N PF05496.12 EME69860.1 - 9.5e-06 25.4 0.1 3.3e-05 23.7 0.1 1.9 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain MCM PF00493.23 EME69860.1 - 4.9e-05 22.5 0.1 8.1e-05 21.8 0.1 1.3 1 0 0 1 1 1 1 MCM P-loop domain Sigma54_activat PF00158.26 EME69860.1 - 0.00033 20.4 0.0 0.055 13.2 0.0 2.4 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_16 PF13191.6 EME69860.1 - 0.00077 19.9 0.1 0.0056 17.1 0.0 2.0 1 1 1 2 2 2 1 AAA ATPase domain Sigma54_activ_2 PF14532.6 EME69860.1 - 0.0019 18.3 0.0 0.0057 16.8 0.0 1.7 1 1 0 1 1 1 1 Sigma-54 interaction domain Rad17 PF03215.15 EME69860.1 - 0.0024 17.8 0.0 0.0052 16.7 0.0 1.5 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_7 PF12775.7 EME69860.1 - 0.0025 17.4 0.0 0.005 16.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_14 PF13173.6 EME69860.1 - 0.0031 17.6 0.0 0.0065 16.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 EME69860.1 - 0.0052 16.5 0.0 0.011 15.5 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein ABC_tran PF00005.27 EME69860.1 - 0.0058 17.1 0.0 0.014 15.9 0.0 1.8 2 0 0 2 2 1 1 ABC transporter NACHT PF05729.12 EME69860.1 - 0.006 16.5 0.0 0.06 13.3 0.0 2.3 2 0 0 2 2 2 1 NACHT domain PduV-EutP PF10662.9 EME69860.1 - 0.011 15.4 0.0 0.02 14.6 0.0 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation RNA_helicase PF00910.22 EME69860.1 - 0.013 15.9 0.0 0.033 14.6 0.0 1.8 1 1 0 1 1 1 0 RNA helicase TsaE PF02367.17 EME69860.1 - 0.013 15.5 0.0 0.026 14.5 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_25 PF13481.6 EME69860.1 - 0.021 14.4 0.0 0.043 13.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 EME69860.1 - 0.021 15.3 0.1 0.067 13.7 0.0 1.9 2 0 0 2 2 1 0 AAA domain TIP49 PF06068.13 EME69860.1 - 0.023 13.9 0.1 0.06 12.5 0.0 1.5 1 1 1 2 2 2 0 TIP49 P-loop domain AAA_21 PF13304.6 EME69860.1 - 0.039 13.8 0.0 0.068 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system T2SSE PF00437.20 EME69860.1 - 0.041 12.9 0.1 0.084 11.9 0.0 1.5 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_3 PF07726.11 EME69860.1 - 0.046 13.6 0.2 0.35 10.7 0.1 2.6 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 EME69860.1 - 0.056 13.2 0.0 0.09 12.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 EME69860.1 - 0.059 13.7 0.2 3.7 7.9 0.1 2.6 2 1 1 3 3 2 0 AAA domain ATPase PF06745.13 EME69860.1 - 0.06 12.7 0.2 1.4 8.3 0.0 2.2 2 0 0 2 2 2 0 KaiC AAA_28 PF13521.6 EME69860.1 - 0.076 13.3 0.0 0.18 12.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain PhoH PF02562.16 EME69860.1 - 0.096 12.1 0.0 0.19 11.1 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein AAA_33 PF13671.6 EME69860.1 - 0.12 12.5 0.0 0.23 11.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain Ta0938 PF11494.8 EME69860.1 - 0.17 12.2 0.1 2.2 8.6 0.1 2.3 2 0 0 2 2 2 0 Ta0938 AAA_15 PF13175.6 EME69860.1 - 0.22 11.2 0.0 2.8 7.6 0.0 2.1 1 1 1 2 2 2 0 AAA ATPase domain AAA_8 PF12780.7 EME69860.1 - 0.22 10.8 0.0 0.56 9.5 0.0 1.6 2 0 0 2 2 2 0 P-loop containing dynein motor region D4 CLP_protease PF00574.23 EME69861.1 - 2.9e-87 291.3 0.0 3.5e-87 291.0 0.0 1.1 1 0 0 1 1 1 1 Clp protease Trigger_C PF05698.14 EME69862.1 - 2.8e-37 128.2 1.2 2.8e-37 128.2 1.2 2.7 3 0 0 3 3 3 1 Bacterial trigger factor protein (TF) C-terminus Trigger_N PF05697.13 EME69862.1 - 2.3e-35 122.0 0.8 2.3e-35 122.0 0.8 2.2 3 0 0 3 3 3 1 Bacterial trigger factor protein (TF) FKBP_C PF00254.28 EME69862.1 - 1.2e-14 54.3 0.4 4.4e-14 52.6 0.2 2.0 2 0 0 2 2 2 1 FKBP-type peptidyl-prolyl cis-trans isomerase Protoglobin PF11563.8 EME69863.1 - 1.7e-41 141.7 1.7 2.4e-41 141.3 0.3 1.9 2 0 0 2 2 2 1 Protoglobin MCPsignal PF00015.21 EME69863.1 - 2.2e-34 118.7 49.4 1.4e-31 109.6 29.3 2.7 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF1664 PF07889.12 EME69863.1 - 0.0002 21.4 9.1 0.15 12.1 3.1 4.0 3 1 0 3 3 3 2 Protein of unknown function (DUF1664) BLOC1_2 PF10046.9 EME69863.1 - 0.16 12.3 12.3 3.2 8.1 1.4 4.3 3 1 1 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF948 PF06103.11 EME69863.1 - 0.19 12.0 27.2 1.1 9.6 4.9 4.9 1 1 4 5 5 5 0 Bacterial protein of unknown function (DUF948) DUF1974 PF09317.11 EME69863.1 - 0.32 10.5 0.1 0.32 10.5 0.1 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF1974) TMPIT PF07851.13 EME69863.1 - 0.54 9.4 5.4 1.6 7.9 2.4 2.2 2 0 0 2 2 2 0 TMPIT-like protein COMMD1_N PF17221.3 EME69863.1 - 0.73 10.2 7.6 0.17 12.2 0.6 3.2 2 1 0 3 3 3 0 COMMD1 N-terminal domain Clathrin_H_link PF13838.6 EME69863.1 - 2.4 8.1 4.9 1 9.3 1.0 2.3 2 0 0 2 2 2 0 Clathrin-H-link AIP3 PF03915.13 EME69863.1 - 2.5 7.1 14.9 3.3 6.7 1.1 2.3 1 1 1 2 2 2 0 Actin interacting protein 3 LOH1CR12 PF10158.9 EME69863.1 - 2.8 8.0 7.2 42 4.2 0.0 2.8 2 1 0 2 2 2 0 Tumour suppressor protein KORA PF16509.5 EME69863.1 - 4.1 7.7 14.5 0.055 13.7 1.4 3.8 3 1 1 4 4 4 0 TrfB plasmid transcriptional repressor Fib_alpha PF08702.10 EME69863.1 - 5 7.3 10.8 3.5 7.8 0.2 3.3 2 2 2 4 4 4 0 Fibrinogen alpha/beta chain family Laminin_I PF06008.14 EME69863.1 - 7 6.3 29.6 0.34 10.6 8.5 3.8 1 1 2 3 3 3 0 Laminin Domain I MCD PF05292.11 EME69864.1 - 1.5e-111 372.1 0.0 1.8e-111 371.8 0.0 1.1 1 0 0 1 1 1 1 Malonyl-CoA decarboxylase C-terminal domain MCD_N PF17408.2 EME69864.1 - 3.4e-27 94.4 0.1 1.6e-26 92.2 0.0 2.3 3 0 0 3 3 3 1 Malonyl-CoA decarboxylase N-terminal domain Carb_kinase PF01256.17 EME69865.1 - 2.1e-47 161.6 1.3 4.1e-47 160.7 1.3 1.4 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.15 EME69865.1 - 2.7e-34 118.5 0.2 2.7e-34 118.5 0.2 1.9 2 0 0 2 2 2 1 YjeF-related protein N-terminus Phos_pyr_kin PF08543.12 EME69865.1 - 0.0012 18.3 0.0 0.0019 17.6 0.0 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase CoA_binding_2 PF13380.6 EME69865.1 - 0.13 12.7 1.1 0.29 11.6 0.2 2.1 2 1 0 2 2 2 0 CoA binding domain DAO PF01266.24 EME69866.1 - 1.3e-70 238.7 5.2 1.5e-70 238.5 5.2 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 EME69866.1 - 2.7e-07 30.1 0.1 3.1e-05 23.4 0.5 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 EME69866.1 - 2.7e-07 30.7 0.2 7.9e-07 29.2 0.2 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 EME69866.1 - 5.1e-07 29.1 3.0 2e-05 23.9 1.0 2.2 2 0 0 2 2 2 1 FAD binding domain Pyr_redox PF00070.27 EME69866.1 - 1.1e-06 29.1 0.3 2.8e-05 24.6 0.8 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.16 EME69866.1 - 2.4e-06 27.3 0.0 3.7e-06 26.7 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Trp_halogenase PF04820.14 EME69866.1 - 1.5e-05 24.1 1.4 0.024 13.5 0.0 2.1 2 0 0 2 2 2 2 Tryptophan halogenase HI0933_like PF03486.14 EME69866.1 - 1.9e-05 23.6 0.0 0.0076 15.0 0.1 2.1 2 0 0 2 2 2 2 HI0933-like protein AlaDh_PNT_C PF01262.21 EME69866.1 - 2.2e-05 23.9 0.1 3.5e-05 23.2 0.1 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_3 PF01494.19 EME69866.1 - 3.7e-05 23.2 0.3 0.001 18.4 0.6 2.1 2 0 0 2 2 2 1 FAD binding domain UDPG_MGDP_dh_N PF03721.14 EME69866.1 - 4e-05 23.3 0.3 5.8e-05 22.7 0.3 1.2 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.18 EME69866.1 - 6.4e-05 22.9 0.5 9.5e-05 22.4 0.5 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GIDA PF01134.22 EME69866.1 - 0.00086 18.5 1.0 0.0014 17.8 1.0 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A Glyco_transf_4 PF13439.6 EME69866.1 - 0.0073 16.3 0.1 0.018 15.0 0.1 1.7 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Sacchrp_dh_NADP PF03435.18 EME69866.1 - 0.0073 16.6 0.0 0.011 16.0 0.0 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain XdhC_C PF13478.6 EME69866.1 - 0.0098 16.4 0.0 0.019 15.5 0.0 1.5 1 0 0 1 1 1 1 XdhC Rossmann domain NAD_Gly3P_dh_N PF01210.23 EME69866.1 - 0.013 15.4 0.4 0.021 14.8 0.4 1.2 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Thi4 PF01946.17 EME69866.1 - 0.017 14.4 0.2 0.093 12.0 0.6 1.8 2 0 0 2 2 2 0 Thi4 family F420_oxidored PF03807.17 EME69866.1 - 0.017 15.6 0.0 0.038 14.6 0.0 1.6 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 EME69866.1 - 0.018 15.2 0.0 0.03 14.5 0.0 1.3 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase TrkA_N PF02254.18 EME69866.1 - 0.018 15.3 0.1 0.037 14.3 0.1 1.5 1 0 0 1 1 1 0 TrkA-N domain NAD_binding_7 PF13241.6 EME69866.1 - 0.02 15.3 0.0 0.034 14.6 0.0 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding FAD_oxidored PF12831.7 EME69866.1 - 0.022 14.1 0.2 0.031 13.6 0.2 1.2 1 0 0 1 1 1 0 FAD dependent oxidoreductase ThiF PF00899.21 EME69866.1 - 0.049 13.0 0.2 0.072 12.4 0.2 1.2 1 0 0 1 1 1 0 ThiF family Amino_oxidase PF01593.24 EME69866.1 - 0.072 12.4 0.1 1.7 7.8 0.1 2.1 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase Rossmann-like PF10727.9 EME69866.1 - 0.078 12.8 0.6 0.17 11.7 0.6 1.6 1 0 0 1 1 1 0 Rossmann-like domain Pyr_redox_3 PF13738.6 EME69866.1 - 0.092 12.0 0.1 0.16 11.2 0.1 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Shikimate_DH PF01488.20 EME69866.1 - 0.14 12.2 0.2 0.21 11.6 0.2 1.2 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Epimerase PF01370.21 EME69866.1 - 0.14 11.6 0.2 0.23 10.9 0.2 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family 2-Hacid_dh_C PF02826.19 EME69866.1 - 0.16 11.3 0.4 0.28 10.5 0.4 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 EME69866.1 - 0.21 11.2 0.0 0.38 10.3 0.0 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain Hemerythrin PF01814.23 EME69867.1 - 3e-05 24.7 1.6 3.8e-05 24.3 1.6 1.2 1 0 0 1 1 1 1 Hemerythrin HHE cation binding domain HATPase_c PF02518.26 EME69868.1 - 1.8e-22 79.9 0.0 2.9e-22 79.3 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 EME69868.1 - 8e-15 54.6 0.1 3.4e-14 52.6 0.1 2.2 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain dCache_1 PF02743.18 EME69868.1 - 5.4e-09 36.2 0.0 8.3e-09 35.6 0.0 1.3 1 0 0 1 1 1 1 Cache domain sCache_3_2 PF17203.4 EME69868.1 - 0.0016 18.6 0.0 0.0078 16.3 0.0 2.1 2 0 0 2 2 2 1 Single cache domain 3 HATPase_c_5 PF14501.6 EME69868.1 - 0.028 14.3 0.0 0.067 13.1 0.0 1.6 1 0 0 1 1 1 0 GHKL domain Competence PF03772.16 EME69869.1 - 6.7e-65 219.1 40.0 6.7e-65 219.1 40.0 2.0 2 0 0 2 2 2 1 Competence protein DUF4131 PF13567.6 EME69869.1 - 1.4e-14 54.1 0.8 1.4e-14 54.1 0.8 4.7 4 1 1 5 5 5 2 Domain of unknown function (DUF4131) tRNA-synt_1c PF00749.21 EME69870.1 - 5.1e-90 301.5 0.0 6.5e-90 301.2 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain Citrate_synt PF00285.21 EME69871.1 - 9.3e-131 436.2 0.0 1.1e-130 435.9 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase, C-terminal domain cNMP_binding PF00027.29 EME69872.1 - 3.7e-19 68.6 0.0 4.5e-19 68.3 0.0 1.1 1 0 0 1 1 1 1 Cyclic nucleotide-binding domain DUF3842 PF12953.7 EME69872.1 - 0.023 15.1 0.2 0.03 14.7 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3842) Sigma70_r4 PF04545.16 EME69873.1 - 5.1e-19 67.5 4.0 1.6e-18 65.9 2.7 2.3 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r2 PF04542.14 EME69873.1 - 5.8e-16 58.0 0.0 8.1e-15 54.4 0.0 2.4 2 0 0 2 2 2 1 Sigma-70 region 2 Sigma70_r1_2 PF00140.20 EME69873.1 - 2e-06 27.7 0.1 6.4e-06 26.1 0.1 1.9 2 0 0 2 2 2 1 Sigma-70 factor, region 1.2 UCR_14kD PF02271.16 EME69873.1 - 0.0018 18.2 0.1 0.046 13.7 0.0 2.4 2 0 0 2 2 2 1 Ubiquinol-cytochrome C reductase complex 14kD subunit Sigma70_r4_2 PF08281.12 EME69873.1 - 0.014 15.0 1.5 0.058 13.1 0.5 2.3 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_19 PF12844.7 EME69873.1 - 0.049 13.7 0.0 3.7 7.6 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_31 PF13560.6 EME69873.1 - 0.074 13.4 2.2 0.63 10.4 0.2 2.6 2 1 0 2 2 2 0 Helix-turn-helix domain EamA PF00892.20 EME69874.1 - 2.6e-35 121.6 34.7 3e-22 79.3 13.2 2.0 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.16 EME69874.1 - 1.1e-05 24.9 1.5 0.0094 15.3 0.1 2.1 2 0 0 2 2 2 2 Triose-phosphate Transporter family COXG PF06240.13 EME69875.1 - 2.6e-37 127.7 0.0 2.9e-37 127.5 0.0 1.0 1 0 0 1 1 1 1 Carbon monoxide dehydrogenase subunit G (CoxG) Polyketide_cyc2 PF10604.9 EME69875.1 - 1.6e-06 28.4 0.0 1.9e-06 28.2 0.0 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.20 EME69875.1 - 0.17 12.1 0.0 0.32 11.2 0.0 1.3 1 1 0 1 1 1 0 Polyketide cyclase / dehydrase and lipid transport TetR_N PF00440.23 EME69876.1 - 2.6e-13 49.5 0.1 5.3e-13 48.5 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family Tim44 PF04280.15 EME69878.1 - 9.3e-20 71.2 0.0 1.2e-19 70.9 0.0 1.1 1 0 0 1 1 1 1 Tim44-like domain Response_reg PF00072.24 EME69879.1 - 1.5e-18 67.0 0.1 2.1e-18 66.5 0.1 1.2 1 0 0 1 1 1 1 Response regulator receiver domain GFO_IDH_MocA PF01408.22 EME69879.1 - 0.0092 16.8 0.0 0.02 15.7 0.0 1.3 1 1 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GGDEF PF00990.21 EME69880.1 - 1.1e-11 44.7 0.0 1.2e-11 44.7 0.0 1.0 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain GGDEF PF00990.21 EME69881.1 - 2.8e-41 141.0 0.1 4.7e-41 140.2 0.1 1.4 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain SBP_bac_3 PF00497.20 EME69881.1 - 5.9e-32 110.9 0.0 8.5e-32 110.4 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 GGDEF_2 PF17853.1 EME69881.1 - 0.0068 16.7 0.2 0.014 15.6 0.2 1.6 1 0 0 1 1 1 1 GGDEF-like domain DUF3611 PF12263.8 EME69881.1 - 0.059 13.3 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3611) Neuralized PF07177.12 EME69881.1 - 0.11 12.5 0.0 0.2 11.6 0.0 1.4 1 0 0 1 1 1 0 Neuralized OsmC PF02566.19 EME69883.1 - 2.2e-17 63.4 0.0 3.4e-17 62.7 0.0 1.2 1 0 0 1 1 1 1 OsmC-like protein Lac_bphage_repr PF06543.12 EME69884.1 - 0.088 12.8 0.1 0.093 12.7 0.1 1.1 1 0 0 1 1 1 0 Lactococcus bacteriophage repressor Resolvase PF00239.21 EME69887.1 - 2.1e-37 128.4 0.0 3.8e-37 127.6 0.0 1.4 1 0 0 1 1 1 1 Resolvase, N terminal domain Zn_ribbon_recom PF13408.6 EME69887.1 - 4.7e-15 55.8 1.0 9.2e-15 54.9 1.0 1.5 1 0 0 1 1 1 1 Recombinase zinc beta ribbon domain Recombinase PF07508.13 EME69887.1 - 6.6e-10 39.3 0.0 1.3e-09 38.4 0.0 1.5 1 0 0 1 1 1 1 Recombinase DUF2924 PF11149.8 EME69888.1 - 2.3e-52 176.9 0.0 2.7e-52 176.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2924) Peptidase_S24 PF00717.23 EME69890.1 - 2.1e-07 30.8 0.0 3.6e-07 30.1 0.0 1.4 1 0 0 1 1 1 1 Peptidase S24-like HTH_31 PF13560.6 EME69890.1 - 4.2e-07 30.2 0.3 8e-07 29.3 0.3 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 EME69890.1 - 1.5e-05 24.9 0.0 2.6e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 EME69890.1 - 6e-05 23.0 0.0 0.00031 20.7 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_26 PF13443.6 EME69890.1 - 0.0005 20.5 0.0 0.0012 19.2 0.0 1.6 2 0 0 2 2 2 1 Cro/C1-type HTH DNA-binding domain DUF3572 PF12096.8 EME69891.1 - 0.038 14.2 0.0 0.056 13.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3572) AAA_24 PF13479.6 EME69893.1 - 1.8e-43 148.6 0.0 2.1e-43 148.4 0.0 1.0 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 EME69893.1 - 0.0021 18.5 0.0 0.0076 16.7 0.0 2.0 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 EME69893.1 - 0.0022 18.4 0.1 0.0034 17.8 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 EME69893.1 - 0.0024 18.2 0.0 0.005 17.1 0.0 1.7 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 EME69893.1 - 0.008 16.1 0.0 0.014 15.3 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_18 PF13238.6 EME69893.1 - 0.02 15.4 0.0 0.054 14.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.27 EME69893.1 - 0.028 14.9 0.0 0.064 13.8 0.0 1.5 1 0 0 1 1 1 0 ABC transporter AAA_28 PF13521.6 EME69893.1 - 0.033 14.4 0.0 0.074 13.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 EME69893.1 - 0.044 13.9 0.0 0.085 12.9 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_19 PF13245.6 EME69893.1 - 0.078 13.3 0.0 0.42 10.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain RuvB_N PF05496.12 EME69893.1 - 0.14 11.9 0.0 0.48 10.2 0.0 1.9 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain IstB_IS21 PF01695.17 EME69893.1 - 0.16 11.7 0.0 0.28 10.9 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein NB-ARC PF00931.22 EME69893.1 - 0.19 10.9 0.0 0.91 8.7 0.0 1.8 2 0 0 2 2 2 0 NB-ARC domain ATPase_2 PF01637.18 EME69893.1 - 0.23 11.3 0.0 0.47 10.3 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea DUF2379 PF09543.10 EME69896.1 - 0.037 14.2 0.3 0.04 14.1 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2379) DUF2336 PF10098.9 EME69898.1 - 0.0014 18.1 0.3 0.0018 17.8 0.3 1.2 1 0 0 1 1 1 1 Uncharacterised protein conserved in bacteria (DUF2336) HTH_23 PF13384.6 EME69899.1 - 0.0054 16.5 0.0 0.0095 15.7 0.0 1.5 1 1 0 1 1 1 1 Homeodomain-like domain Terminase_5 PF06056.12 EME69899.1 - 0.033 14.1 0.0 0.085 12.8 0.0 1.6 2 0 0 2 2 2 0 Putative ATPase subunit of terminase (gpP-like) Mod_r PF07200.13 EME69899.1 - 0.099 12.7 0.0 0.11 12.6 0.0 1.1 1 0 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein AAA_30 PF13604.6 EME69900.1 - 7.9e-21 74.6 0.0 2.2e-20 73.2 0.0 1.7 1 1 0 1 1 1 1 AAA domain UvrD_C_2 PF13538.6 EME69900.1 - 1.8e-19 69.3 0.1 3.8e-19 68.3 0.1 1.6 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain AAA_19 PF13245.6 EME69900.1 - 2.3e-12 47.5 0.0 6e-12 46.1 0.0 1.6 2 0 0 2 2 2 1 AAA domain Viral_helicase1 PF01443.18 EME69900.1 - 2.7e-08 33.9 0.0 0.0033 17.2 0.0 3.2 3 0 0 3 3 3 3 Viral (Superfamily 1) RNA helicase AAA_22 PF13401.6 EME69900.1 - 3.2e-05 24.2 0.0 6.7e-05 23.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain PIF1 PF05970.14 EME69900.1 - 6.6e-05 22.2 0.8 0.0038 16.4 0.0 3.0 2 1 1 3 3 3 1 PIF1-like helicase AAA_16 PF13191.6 EME69900.1 - 0.014 15.8 0.1 0.042 14.2 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain UvrD_C PF13361.6 EME69900.1 - 0.036 13.5 0.0 0.062 12.7 0.0 1.4 1 0 0 1 1 1 0 UvrD-like helicase C-terminal domain DUF927 PF06048.11 EME69901.1 - 1.4e-39 136.4 0.0 2.2e-39 135.8 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF927) Toprim_3 PF13362.6 EME69901.1 - 2.4e-23 82.3 0.3 8.6e-23 80.5 0.3 2.1 1 0 0 1 1 1 1 Toprim domain Toprim_2 PF13155.6 EME69901.1 - 0.009 16.4 0.0 0.027 14.9 0.0 1.9 1 0 0 1 1 1 1 Toprim-like YozE_SAM_like PF06855.12 EME69902.1 - 1.3e-05 25.3 0.0 1.9e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 YozE SAM-like fold DNA_methylase PF00145.17 EME69906.1 - 4.7e-39 134.7 0.0 9.7e-22 77.7 0.0 3.0 3 0 0 3 3 3 3 C-5 cytosine-specific DNA methylase PAPS_reduct PF01507.19 EME69907.1 - 1.3e-08 35.1 0.0 2.2e-08 34.3 0.0 1.4 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family ParBc PF02195.18 EME69908.1 - 3.4e-11 43.3 0.0 7.4e-11 42.2 0.0 1.5 1 0 0 1 1 1 1 ParB-like nuclease domain N6_N4_Mtase PF01555.18 EME69908.1 - 3.5e-11 43.3 0.3 5.2e-10 39.4 0.3 2.5 1 1 0 1 1 1 1 DNA methylase UPF0020 PF01170.18 EME69908.1 - 0.09 12.5 0.1 4.5 6.9 0.0 2.4 2 0 0 2 2 2 0 Putative RNA methylase family UPF0020 Met_10 PF02475.16 EME69908.1 - 0.21 11.3 0.0 0.33 10.7 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein ALMT PF11744.8 EME69911.1 - 0.89 8.3 3.3 1.3 7.7 3.2 1.4 1 1 0 1 1 1 0 Aluminium activated malate transporter Bac_DNA_binding PF00216.21 EME69912.1 - 8.3e-22 77.2 0.2 8.9e-22 77.1 0.2 1.0 1 0 0 1 1 1 1 Bacterial DNA-binding protein HU-CCDC81_bac_2 PF18175.1 EME69912.1 - 0.015 15.2 0.0 0.02 14.8 0.0 1.2 1 0 0 1 1 1 0 CCDC81-like prokaryotic HU domain 2 HU-HIG PF18291.1 EME69912.1 - 0.053 13.6 0.0 0.062 13.4 0.0 1.1 1 0 0 1 1 1 0 HU domain fused to wHTH, Ig, or Glycine-rich motif DUF3489 PF11994.8 EME69913.1 - 9e-29 99.3 0.3 1.6e-28 98.6 0.3 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3489) DUF2742 PF10888.8 EME69913.1 - 0.15 12.3 0.2 0.25 11.6 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2742) Terminase_GpA PF05876.12 EME69917.1 - 9.7e-213 707.7 1.7 1.1e-212 707.5 1.7 1.0 1 0 0 1 1 1 1 Phage terminase large subunit (GpA) Lar_restr_allev PF14354.6 EME69917.1 - 0.009 16.4 0.7 0.02 15.3 0.7 1.5 1 0 0 1 1 1 1 Restriction alleviation protein Lar Zn_Tnp_IS1595 PF12760.7 EME69917.1 - 0.021 14.8 2.2 0.066 13.2 2.2 1.9 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.10 EME69917.1 - 0.23 11.6 1.0 22 5.3 0.0 2.5 2 0 0 2 2 2 0 Zinc ribbon domain zf-HYPF PF07503.12 EME69917.1 - 1.8 8.4 4.2 1.4 8.7 0.2 2.4 2 0 0 2 2 2 0 HypF finger PspA_IM30 PF04012.12 EME69918.1 - 0.029 13.9 0.1 0.031 13.8 0.1 1.0 1 0 0 1 1 1 0 PspA/IM30 family gpW PF02831.15 EME69918.1 - 0.033 14.1 0.1 0.043 13.7 0.1 1.2 1 0 0 1 1 1 0 gpW Phage_portal_2 PF05136.13 EME69919.1 - 2e-105 352.9 0.0 3.3e-105 352.2 0.0 1.3 1 0 0 1 1 1 1 Phage portal protein, lambda family Peptidase_S49 PF01343.18 EME69920.1 - 3.3e-30 105.1 0.1 5e-30 104.5 0.1 1.2 1 0 0 1 1 1 1 Peptidase family S49 CLP_protease PF00574.23 EME69920.1 - 0.098 12.5 0.1 2.2 8.1 0.0 2.2 1 1 1 2 2 2 0 Clp protease HDPD PF02924.14 EME69921.1 - 2.5e-29 101.7 3.6 2.8e-29 101.6 3.6 1.0 1 0 0 1 1 1 1 Bacteriophage lambda head decoration protein D Phage_cap_E PF03864.15 EME69922.1 - 9.9e-93 310.9 0.5 1.2e-92 310.7 0.5 1.0 1 0 0 1 1 1 1 Phage major capsid protein E Gifsy-2 PF13856.6 EME69923.1 - 0.03 14.7 0.0 0.037 14.4 0.0 1.2 1 0 0 1 1 1 0 ATP-binding sugar transporter from pro-phage IGF2_C PF08365.11 EME69924.1 - 0.16 12.0 1.6 0.54 10.3 0.1 2.4 2 0 0 2 2 2 0 Insulin-like growth factor II E-peptide RES PF08808.11 EME69925.1 - 6.2e-25 87.9 1.0 1.2e-24 87.1 1.0 1.4 1 1 0 1 1 1 1 RES domain DUF2384 PF09722.10 EME69926.1 - 1.2e-19 70.1 0.2 2.5e-19 69.0 0.2 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF2384) Tape_meas_lam_C PF09718.10 EME69931.1 - 7.5e-20 70.8 3.1 7.5e-20 70.8 3.1 3.9 5 0 0 5 5 5 1 Lambda phage tail tape-measure protein (Tape_meas_lam_C) SHOCT PF09851.9 EME69931.1 - 0.0053 16.5 3.1 0.0053 16.5 3.1 3.5 4 0 0 4 4 4 1 Short C-terminal domain GvpG PF05120.12 EME69931.1 - 0.079 13.0 2.7 0.7 9.9 1.0 3.0 2 0 0 2 2 2 0 Gas vesicle protein G TPR_22 PF18833.1 EME69931.1 - 0.1 12.7 0.1 0.26 11.4 0.1 1.6 1 0 0 1 1 1 0 Tetratricopeptide repeat KfrA_N PF11740.8 EME69933.1 - 4.1 8.1 13.5 0.15 12.7 5.6 2.4 2 1 0 2 2 2 0 Plasmid replication region DNA-binding N-term Radical_SAM PF04055.21 EME69935.1 - 1.8e-10 41.4 0.0 2.9e-10 40.8 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 EME69935.1 - 4.1e-08 33.4 0.0 7.9e-08 32.5 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 EME69935.1 - 2.5e-06 27.8 0.0 4.6e-06 26.9 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Knl1_RWD_C PF18210.1 EME69935.1 - 0.19 12.2 0.1 0.35 11.4 0.1 1.4 1 0 0 1 1 1 0 Knl1 RWD C-terminal domain Radical_SAM PF04055.21 EME69936.1 - 2e-08 34.8 0.0 3.7e-08 33.9 0.0 1.4 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 EME69936.1 - 1.6e-05 25.0 0.0 5.1e-05 23.4 0.0 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 EME69936.1 - 2.1e-05 24.8 0.1 6.8e-05 23.2 0.0 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain DUF1833 PF08875.11 EME69937.1 - 2.2e-33 114.9 0.1 7.1e-32 110.0 0.1 2.0 1 1 0 1 1 1 1 Domain of unknown function (DUF1833) Fer4_13 PF13370.6 EME69937.1 - 0.033 14.7 0.2 0.069 13.7 0.2 1.5 1 0 0 1 1 1 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 EME69937.1 - 0.13 13.0 0.2 0.32 11.7 0.2 1.6 1 0 0 1 1 1 0 4Fe-4S single cluster domain LysR_substrate PF03466.20 EME69938.1 - 6.5e-27 94.3 0.6 8.7e-27 93.9 0.6 1.1 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 EME69938.1 - 3e-14 52.7 0.2 8.5e-14 51.3 0.2 1.8 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family Transposase_mut PF00872.18 EME69939.1 - 3.4e-122 408.0 0.2 3.9e-122 407.8 0.2 1.0 1 0 0 1 1 1 1 Transposase, Mutator family MULE PF10551.9 EME69939.1 - 2e-08 34.5 0.0 4.2e-08 33.5 0.0 1.6 1 0 0 1 1 1 1 MULE transposase domain Creatininase PF02633.14 EME69939.1 - 0.0037 16.8 0.2 0.01 15.3 0.2 1.7 2 0 0 2 2 2 1 Creatinine amidohydrolase DDE_Tnp_ISL3 PF01610.17 EME69939.1 - 0.0078 16.0 0.3 0.59 9.8 0.0 2.2 1 1 1 2 2 2 2 Transposase DDE_Tnp_IS240 PF13610.6 EME69939.1 - 0.12 12.6 2.0 6.3 7.0 1.3 2.8 1 1 0 1 1 1 0 DDE domain Acetyltransf_1 PF00583.25 EME69940.1 - 0.085 13.1 0.0 0.22 11.8 0.0 1.6 1 1 0 1 1 1 0 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 EME69940.1 - 0.15 12.0 0.0 0.25 11.3 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain NLPC_P60 PF00877.19 EME69941.1 - 4.4e-06 26.7 0.0 5.3e-06 26.4 0.0 1.1 1 0 0 1 1 1 1 NlpC/P60 family Phage-tail_3 PF13550.6 EME69942.1 - 3.9e-08 33.3 0.0 1e-07 32.0 0.0 1.7 1 0 0 1 1 1 1 Putative phage tail protein Phage_holin_3_3 PF16083.5 EME69943.1 - 3.9e-13 49.3 5.6 6.3e-13 48.6 5.6 1.3 1 1 0 1 1 1 1 LydA holin phage, holin superfamily III DUF3040 PF11239.8 EME69945.1 - 0.096 13.0 2.8 1.4 9.2 0.7 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) HlyD_3 PF13437.6 EME69946.1 - 3.3e-20 72.8 1.2 1.5e-18 67.5 0.6 2.6 2 0 0 2 2 2 1 HlyD family secretion protein HlyD PF00529.20 EME69946.1 - 8.2e-13 48.0 0.0 1.7e-12 47.0 0.0 1.6 1 1 0 1 1 1 1 HlyD membrane-fusion protein of T1SS HlyD_D23 PF16576.5 EME69946.1 - 1.2e-12 47.5 8.2 2.2e-10 40.1 3.2 2.3 1 1 1 2 2 2 2 Barrel-sandwich domain of CusB or HlyD membrane-fusion Biotin_lipoyl_2 PF13533.6 EME69946.1 - 3.1e-06 26.9 3.4 2.4e-05 24.1 0.2 3.3 2 0 0 2 2 2 1 Biotin-lipoyl like zf-C4H2 PF10146.9 EME69946.1 - 3.7e-05 24.1 2.6 6.5e-05 23.3 2.6 1.3 1 0 0 1 1 1 1 Zinc finger-containing protein Biotin_lipoyl PF00364.22 EME69946.1 - 0.011 15.6 0.8 0.036 13.9 0.1 2.2 2 0 0 2 2 2 0 Biotin-requiring enzyme DUF1905 PF08922.11 EME69946.1 - 0.021 14.9 0.4 2.3 8.3 0.1 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF1905) PTS_EIIA_1 PF00358.20 EME69946.1 - 0.15 11.9 0.9 1.5 8.6 0.0 2.7 3 0 0 3 3 3 0 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 TMF_TATA_bd PF12325.8 EME69946.1 - 0.21 11.8 16.1 6.6 7.0 0.0 3.5 2 1 1 3 3 3 0 TATA element modulatory factor 1 TATA binding Spc7 PF08317.11 EME69946.1 - 0.23 10.3 11.9 0.046 12.6 2.6 2.4 1 1 1 2 2 2 0 Spc7 kinetochore protein Fez1 PF06818.15 EME69946.1 - 1.8 9.0 12.4 3.4 8.1 12.4 1.4 1 0 0 1 1 1 0 Fez1 ABC_membrane PF00664.23 EME69947.1 - 1.1e-54 186.0 9.8 1.4e-54 185.6 9.8 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 EME69947.1 - 4.9e-36 124.3 0.0 8.6e-36 123.5 0.0 1.4 1 0 0 1 1 1 1 ABC transporter Peptidase_C39 PF03412.15 EME69947.1 - 2.3e-07 30.7 0.0 4.1e-07 29.9 0.0 1.4 1 0 0 1 1 1 1 Peptidase C39 family SMC_N PF02463.19 EME69947.1 - 5.8e-07 29.2 0.1 0.00031 20.2 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 EME69947.1 - 0.0007 19.9 0.0 0.0044 17.3 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 EME69947.1 - 0.0011 19.4 0.3 0.0044 17.4 0.1 2.2 2 1 0 2 2 1 1 AAA ATPase domain AAA_29 PF13555.6 EME69947.1 - 0.0023 17.7 0.1 0.0069 16.1 0.1 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 EME69947.1 - 0.017 14.9 0.1 0.062 13.0 0.1 2.1 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.6 EME69947.1 - 0.017 15.7 0.0 0.037 14.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_21 PF13304.6 EME69947.1 - 0.02 14.7 0.0 0.057 13.2 0.0 1.7 2 0 0 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system MeaB PF03308.16 EME69947.1 - 0.055 12.4 0.1 0.091 11.7 0.1 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB RsgA_GTPase PF03193.16 EME69947.1 - 0.074 12.9 0.0 0.19 11.6 0.0 1.6 1 0 0 1 1 1 0 RsgA GTPase AAA_33 PF13671.6 EME69947.1 - 0.11 12.7 0.0 0.34 11.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 EME69947.1 - 0.24 11.9 0.0 0.48 10.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 EME69947.1 - 0.27 11.3 0.5 3.5 7.7 0.0 3.0 4 1 0 4 4 4 0 AAA domain Vma12 PF11712.8 EME69947.1 - 0.47 10.5 2.9 0.98 9.5 2.9 1.4 1 0 0 1 1 1 0 Endoplasmic reticulum-based factor for assembly of V-ATPase HlyC PF02794.16 EME69948.1 - 3.4e-31 107.8 0.0 4.1e-31 107.5 0.0 1.1 1 0 0 1 1 1 1 RTX toxin acyltransferase family Peptidase_S8 PF00082.22 EME69949.1 - 2.7e-31 109.0 7.9 4.8e-31 108.1 7.9 1.5 1 0 0 1 1 1 1 Subtilase family P_proprotein PF01483.20 EME69949.1 - 5.1e-23 80.9 0.4 5.1e-23 80.9 0.4 2.1 2 1 0 2 2 2 1 Proprotein convertase P-domain HemolysinCabind PF00353.19 EME69949.1 - 6.6e-21 73.9 92.8 1.4e-08 34.5 18.2 9.2 8 1 1 9 9 9 3 RTX calcium-binding nonapeptide repeat (4 copies) Cadherin_5 PF17892.1 EME69949.1 - 1.2e-16 60.4 0.4 1.1e-15 57.4 0.0 2.9 2 0 0 2 2 2 1 Cadherin-like domain Big_9 PF17963.1 EME69949.1 - 1.1e-10 42.0 0.0 1.1e-10 42.0 0.0 5.0 4 1 0 4 4 4 1 Bacterial Ig domain Dockerin_1 PF00404.18 EME69949.1 - 4.3 7.6 7.5 0.79 10.0 0.1 3.4 3 1 1 4 4 4 0 Dockerin type I domain Usp PF00582.26 EME69950.1 - 3.2e-12 47.1 5.6 3.9e-08 33.9 0.4 2.9 2 1 0 2 2 2 2 Universal stress protein family HGD-D PF06050.13 EME69951.1 - 1.9e-45 156.0 0.0 2.1e-45 155.9 0.0 1.0 1 0 0 1 1 1 1 2-hydroxyglutaryl-CoA dehydratase, D-component BcrAD_BadFG PF01869.20 EME69952.1 - 7.6e-120 399.4 0.5 8.7e-120 399.2 0.5 1.0 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family FGGY_N PF00370.21 EME69952.1 - 0.0079 15.8 0.2 0.016 14.7 0.0 1.6 2 0 0 2 2 2 1 FGGY family of carbohydrate kinases, N-terminal domain ROK PF00480.20 EME69952.1 - 0.088 12.3 0.0 0.22 11.0 0.0 1.6 2 0 0 2 2 2 0 ROK family FtsA PF14450.6 EME69952.1 - 0.1 13.1 0.5 0.35 11.3 0.0 2.2 2 1 0 2 2 2 0 Cell division protein FtsA BcrAD_BadFG PF01869.20 EME69953.1 - 1.5e-57 195.1 4.0 1.7e-57 195.0 4.0 1.0 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family FtsA PF14450.6 EME69953.1 - 0.056 13.9 5.3 8.2 6.9 5.3 2.9 1 1 0 1 1 1 0 Cell division protein FtsA Acetyltransf_1 PF00583.25 EME69954.1 - 2.2e-20 73.0 0.5 5.7e-09 36.2 0.0 2.2 2 0 0 2 2 2 2 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 EME69954.1 - 3.3e-10 40.2 0.4 9.2e-05 22.8 0.0 2.4 2 0 0 2 2 2 2 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 EME69954.1 - 7.5e-09 35.6 0.1 0.0032 17.4 0.0 2.2 2 0 0 2 2 2 2 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 EME69954.1 - 3.2e-07 30.5 0.0 0.0004 20.5 0.0 2.1 2 0 0 2 2 2 2 Acetyltransferase (GNAT) domain Acetyltransf_18 PF18014.1 EME69954.1 - 1.9e-05 24.5 0.2 0.049 13.5 0.1 3.3 3 0 0 3 3 3 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 EME69954.1 - 0.00041 20.4 0.2 0.46 10.6 0.0 2.4 2 0 0 2 2 2 2 GCN5-related N-acetyl-transferase FR47 PF08445.10 EME69954.1 - 0.024 14.6 0.2 4.3 7.4 0.0 2.8 3 0 0 3 3 3 0 FR47-like protein ATP-grasp_5 PF13549.6 EME69955.1 - 3.9e-74 248.8 0.0 5.9e-74 248.3 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain Succ_CoA_lig PF13607.6 EME69955.1 - 2.3e-47 160.3 0.0 1.7e-46 157.4 0.0 2.4 2 0 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 EME69955.1 - 2.1e-19 70.1 0.0 1e-18 67.9 0.0 2.3 1 0 0 1 1 1 1 CoA binding domain Acetyltransf_3 PF13302.7 EME69955.1 - 1.9e-08 35.1 0.0 4.7e-08 33.8 0.0 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 EME69955.1 - 1.3e-06 28.6 0.0 3e-06 27.5 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Peripla_BP_6 PF13458.6 EME69955.1 - 0.0021 17.8 0.4 7.1 6.2 0.1 3.4 3 0 0 3 3 3 2 Periplasmic binding protein FR47 PF08445.10 EME69955.1 - 0.013 15.4 0.0 0.036 14.0 0.0 1.7 1 0 0 1 1 1 0 FR47-like protein Acetyltransf_4 PF13420.7 EME69955.1 - 0.049 13.8 0.0 0.11 12.6 0.0 1.5 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 EME69955.1 - 0.16 12.4 0.0 0.59 10.6 0.0 2.0 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 EME69955.1 - 0.2 11.6 0.0 0.43 10.5 0.0 1.5 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain ATP-grasp_2 PF08442.10 EME69955.1 - 0.23 11.0 0.0 0.44 10.1 0.0 1.4 1 0 0 1 1 1 0 ATP-grasp domain 4HBT_2 PF13279.6 EME69956.1 - 2.8e-14 53.6 0.1 3.3e-14 53.4 0.1 1.0 1 0 0 1 1 1 1 Thioesterase-like superfamily 4HBT PF03061.22 EME69956.1 - 8.3e-07 29.3 0.1 1.2e-06 28.8 0.1 1.2 1 0 0 1 1 1 1 Thioesterase superfamily zf_C2H2_ZHX PF18387.1 EME69956.1 - 0.022 14.4 0.9 3.9 7.2 0.1 2.3 2 0 0 2 2 2 0 Zinc-fingers and homeoboxes C2H2 finger domain LnmK_N_HDF PF18238.1 EME69956.1 - 0.054 13.3 0.0 0.065 13.0 0.0 1.1 1 0 0 1 1 1 0 LnmK N-terminal Hot Dog Fold domain Acyl-ACP_TE PF01643.17 EME69956.1 - 0.074 12.3 0.0 0.13 11.5 0.0 1.4 1 1 0 1 1 1 0 Acyl-ACP thioesterase ECH_1 PF00378.20 EME69957.1 - 1.3e-35 122.9 0.0 1.6e-35 122.6 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 EME69957.1 - 5.8e-16 58.9 0.0 7.7e-16 58.5 0.0 1.2 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase Transketolase_C PF02780.20 EME69957.1 - 0.061 13.2 0.0 0.17 11.8 0.0 1.7 1 0 0 1 1 1 0 Transketolase, C-terminal domain ECH_1 PF00378.20 EME69958.1 - 2.7e-36 125.2 0.1 4.6e-36 124.4 0.1 1.2 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 EME69958.1 - 1.2e-19 71.0 0.5 2.9e-19 69.7 0.4 1.6 1 1 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ADH_N PF08240.12 EME69959.1 - 2.8e-27 94.7 2.0 5.2e-27 93.9 2.0 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 EME69959.1 - 8.5e-19 67.8 0.3 8.5e-19 67.8 0.3 1.7 2 0 0 2 2 2 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.21 EME69959.1 - 0.0012 18.1 0.4 0.0021 17.4 0.4 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain AdoHcyase_NAD PF00670.21 EME69959.1 - 0.0081 16.2 2.1 0.019 15.0 2.1 1.5 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.19 EME69959.1 - 0.065 12.6 0.6 0.18 11.1 0.3 1.8 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Methyltransf_15 PF09445.10 EME69959.1 - 0.1 12.2 0.2 0.16 11.6 0.2 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase 3HCDH_N PF02737.18 EME69960.1 - 3.8e-56 189.8 0.0 5.6e-56 189.3 0.0 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.22 EME69960.1 - 1.5e-31 108.8 0.0 3.3e-31 107.8 0.0 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_Gly3P_dh_N PF01210.23 EME69960.1 - 3.2e-05 24.0 0.0 7.9e-05 22.7 0.0 1.7 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.15 EME69960.1 - 0.00022 21.4 0.0 0.00051 20.2 0.0 1.6 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 EME69960.1 - 0.00035 21.1 0.6 0.0013 19.3 0.6 2.0 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent AlaDh_PNT_C PF01262.21 EME69960.1 - 0.003 16.9 0.0 0.0047 16.3 0.0 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain XdhC_C PF13478.6 EME69960.1 - 0.064 13.8 0.0 0.13 12.8 0.0 1.7 1 1 0 1 1 1 0 XdhC Rossmann domain ThiF PF00899.21 EME69960.1 - 0.074 12.4 0.1 0.21 10.9 0.2 1.7 2 0 0 2 2 2 0 ThiF family 2-Hacid_dh_C PF02826.19 EME69960.1 - 0.11 11.8 0.2 0.26 10.6 0.0 1.8 3 0 0 3 3 3 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain OTCace PF00185.24 EME69960.1 - 0.12 12.4 0.3 0.33 11.0 0.0 1.8 2 0 0 2 2 2 0 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Ldh_1_N PF00056.23 EME69960.1 - 0.14 12.3 0.2 0.49 10.5 0.2 1.9 1 1 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain GIDA PF01134.22 EME69960.1 - 0.16 11.0 0.0 0.28 10.2 0.0 1.4 2 0 0 2 2 2 0 Glucose inhibited division protein A IlvN PF07991.12 EME69960.1 - 0.18 11.4 2.0 1.4 8.5 0.7 2.9 3 1 0 3 3 3 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain DapB_N PF01113.20 EME69960.1 - 0.31 11.2 3.1 7.1 6.8 0.9 3.0 1 1 1 2 2 2 0 Dihydrodipicolinate reductase, N-terminus ECH_1 PF00378.20 EME69961.1 - 4e-56 190.1 0.2 4.5e-56 190.0 0.2 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 EME69961.1 - 2.7e-37 129.0 0.1 3.3e-37 128.7 0.1 1.1 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase Thiolase_N PF00108.23 EME69962.1 - 4.3e-79 265.5 0.1 5.5e-79 265.2 0.1 1.1 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 EME69962.1 - 1.3e-40 137.8 1.3 3.6e-39 133.2 0.1 2.7 3 0 0 3 3 3 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 EME69962.1 - 0.0038 16.8 3.9 0.0088 15.7 1.4 2.5 2 1 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.10 EME69962.1 - 0.12 12.2 0.9 6.7 6.7 0.1 2.5 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DUF3485 PF11984.8 EME69962.1 - 0.13 12.0 0.0 0.22 11.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3485) Amidohydro_2 PF04909.14 EME69963.1 - 1.9e-44 152.6 0.4 2.2e-44 152.4 0.4 1.0 1 0 0 1 1 1 1 Amidohydrolase PEP_hydrolase PF09370.10 EME69963.1 - 0.023 14.0 0.0 0.22 10.7 0.0 2.0 2 0 0 2 2 2 0 Phosphoenolpyruvate hydrolase-like CoA_transf_3 PF02515.17 EME69964.1 - 2.3e-83 280.4 0.1 2.6e-83 280.2 0.1 1.0 1 0 0 1 1 1 1 CoA-transferase family III DBI_PRT PF02277.17 EME69964.1 - 0.072 12.3 0.1 0.1 11.8 0.1 1.2 1 0 0 1 1 1 0 Phosphoribosyltransferase TetR_N PF00440.23 EME69965.1 - 7e-14 51.4 0.4 1.2e-13 50.6 0.4 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_4 PF08359.11 EME69965.1 - 2.1e-06 27.9 0.0 2.9e-06 27.4 0.0 1.2 1 0 0 1 1 1 1 YsiA-like protein, C-terminal region TetR_C_29 PF17938.1 EME69965.1 - 1.5e-05 25.0 0.0 3.3e-05 23.9 0.0 1.5 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_24 PF17932.1 EME69965.1 - 0.00011 22.4 0.0 0.00017 21.8 0.0 1.3 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_6 PF13977.6 EME69965.1 - 0.0004 20.6 0.0 0.0013 18.9 0.0 1.8 2 0 0 2 2 2 1 BetI-type transcriptional repressor, C-terminal TetR_C_2 PF08361.11 EME69965.1 - 0.011 15.9 0.0 0.019 15.1 0.0 1.4 1 0 0 1 1 1 0 MAATS-type transcriptional repressor, C-terminal region Glyco_hydro_79n PF03662.14 EME69965.1 - 0.028 13.4 0.0 0.039 12.9 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 79, N-terminal domain SURF2 PF05477.11 EME69966.1 - 0.04 13.6 0.0 0.055 13.2 0.0 1.2 1 0 0 1 1 1 0 Surfeit locus protein 2 (SURF2) QueC PF06508.13 EME69967.1 - 4.8e-07 29.5 0.2 3.5e-05 23.4 0.0 2.5 2 0 0 2 2 2 2 Queuosine biosynthesis protein QueC HTH_17 PF12728.7 EME69968.1 - 4.2e-07 30.1 0.9 6.2e-07 29.5 0.9 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 EME69968.1 - 0.0039 17.0 1.3 0.0069 16.1 0.5 1.7 1 1 1 2 2 2 1 Homeodomain-like domain HTH_Tnp_4 PF13613.6 EME69968.1 - 0.043 13.6 0.0 0.064 13.0 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease PDDEXK_1 PF12705.7 EME69970.1 - 8.2e-05 22.6 0.0 0.00011 22.2 0.0 1.2 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Nuc_deoxyrib_tr PF05014.15 EME69970.1 - 0.027 14.5 0.1 0.052 13.6 0.1 1.4 1 0 0 1 1 1 0 Nucleoside 2-deoxyribosyltransferase DUF4073 PF13285.6 EME69971.1 - 0.15 11.7 0.0 0.29 10.8 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4073) AAA_25 PF13481.6 EME69972.1 - 3.8e-41 140.8 0.6 3.8e-41 140.8 0.6 1.9 2 0 0 2 2 2 1 AAA domain RepB_primase PF16793.5 EME69972.1 - 9.3e-08 32.5 0.7 2.2e-07 31.2 0.4 1.7 2 0 0 2 2 2 1 RepB DNA-primase from phage plasmid Lipase_GDSL_2 PF13472.6 EME69972.1 - 0.03 14.7 0.2 0.14 12.6 0.2 2.2 1 1 0 1 1 1 0 GDSL-like Lipase/Acylhydrolase family Lant_dehydr_N PF04738.13 EME69975.1 - 0.0045 15.1 0.2 0.0065 14.6 0.2 1.2 1 0 0 1 1 1 1 Lantibiotic dehydratase, N terminus HTH_31 PF13560.6 EME69976.1 - 1.4e-07 31.8 3.4 2.8e-07 30.8 3.4 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 EME69976.1 - 0.00012 22.1 0.2 0.00023 21.2 0.2 1.5 1 1 0 1 1 1 1 Helix-turn-helix PSK_trans_fac PF07704.11 EME69976.1 - 0.00012 22.7 1.7 0.00017 22.2 0.1 1.9 2 0 0 2 2 2 1 Rv0623-like transcription factor LacI PF00356.21 EME69976.1 - 0.0031 17.3 0.1 0.0068 16.2 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, lacI family HTH_24 PF13412.6 EME69976.1 - 0.0072 15.9 0.1 0.75 9.4 0.0 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_25 PF13413.6 EME69976.1 - 0.017 15.0 1.9 0.031 14.1 1.9 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_28 PF13518.6 EME69976.1 - 0.022 14.9 1.6 2.2 8.5 0.1 2.6 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_19 PF12844.7 EME69976.1 - 0.03 14.3 0.1 0.046 13.8 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_26 PF13443.6 EME69976.1 - 0.04 14.3 0.0 0.065 13.7 0.0 1.3 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain PIN PF01850.21 EME69977.1 - 2.4e-16 60.3 0.0 2.9e-16 60.1 0.0 1.0 1 0 0 1 1 1 1 PIN domain DNA_methylase PF00145.17 EME69979.1 - 3.1e-10 39.9 0.0 3.7e-10 39.7 0.0 1.1 1 0 0 1 1 1 1 C-5 cytosine-specific DNA methylase PAPS_reduct PF01507.19 EME69980.1 - 3.5e-10 40.2 0.0 5.6e-10 39.5 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family N6_N4_Mtase PF01555.18 EME69981.1 - 1.4e-14 54.4 0.2 1.4e-12 47.8 0.2 2.7 1 1 0 1 1 1 1 DNA methylase ParBc PF02195.18 EME69981.1 - 9.8e-11 41.8 0.0 2.4e-10 40.5 0.0 1.6 1 0 0 1 1 1 1 ParB-like nuclease domain Met_10 PF02475.16 EME69981.1 - 0.06 13.1 0.0 0.095 12.4 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein UPF0020 PF01170.18 EME69981.1 - 0.095 12.4 0.0 12 5.6 0.0 2.4 2 0 0 2 2 2 0 Putative RNA methylase family UPF0020 DUF2244 PF10003.9 EME69984.1 - 0.12 12.1 2.0 0.14 11.8 2.0 1.4 1 1 0 1 1 1 0 Integral membrane protein (DUF2244) Bac_DNA_binding PF00216.21 EME69985.1 - 2.3e-22 79.0 0.1 2.5e-22 78.9 0.1 1.0 1 0 0 1 1 1 1 Bacterial DNA-binding protein HU-CCDC81_bac_2 PF18175.1 EME69985.1 - 0.0048 16.7 0.0 0.0065 16.3 0.0 1.2 1 0 0 1 1 1 1 CCDC81-like prokaryotic HU domain 2 HU-HIG PF18291.1 EME69985.1 - 0.022 14.8 0.0 0.024 14.7 0.0 1.0 1 0 0 1 1 1 0 HU domain fused to wHTH, Ig, or Glycine-rich motif DpnD-PcfM PF14207.6 EME69986.1 - 0.0061 16.4 0.4 0.0095 15.8 0.4 1.3 1 0 0 1 1 1 1 DpnD/PcfM-like protein DUF3489 PF11994.8 EME69987.1 - 1.8e-31 108.0 1.2 3.7e-31 107.0 0.4 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF3489) DUF1495 PF07381.11 EME69987.1 - 0.00011 21.9 0.0 0.24 11.2 0.0 2.3 2 0 0 2 2 2 2 Winged helix DNA-binding domain (DUF1495) MarR_2 PF12802.7 EME69987.1 - 0.00013 21.8 0.0 0.65 9.9 0.0 2.5 2 1 0 2 2 2 2 MarR family MarR PF01047.22 EME69987.1 - 0.022 14.7 0.1 0.14 12.1 0.0 2.3 3 0 0 3 3 3 0 MarR family HTH_23 PF13384.6 EME69987.1 - 0.11 12.3 0.0 0.25 11.2 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain PDEase_I_N PF08499.12 EME69988.1 - 0.13 12.1 0.0 21 5.1 0.0 2.3 2 0 0 2 2 2 0 3'5'-cyclic nucleotide phosphodiesterase N-terminal NUDE_C PF04880.13 EME69989.1 - 8.4 6.8 11.9 1.6 9.1 0.7 2.1 1 1 1 2 2 2 0 NUDE protein, C-terminal conserved region Terminase_GpA PF05876.12 EME69990.1 - 2.4e-209 696.5 1.2 2.8e-209 696.3 1.2 1.0 1 0 0 1 1 1 1 Phage terminase large subunit (GpA) DUF3268 PF11672.8 EME69990.1 - 0.021 15.1 0.1 0.056 13.8 0.1 1.6 1 0 0 1 1 1 0 zinc-finger-containing domain Lar_restr_allev PF14354.6 EME69990.1 - 0.037 14.4 0.3 0.077 13.4 0.3 1.5 1 0 0 1 1 1 0 Restriction alleviation protein Lar zf-HYPF PF07503.12 EME69990.1 - 1.4 8.8 3.3 1.8 8.4 0.2 2.4 2 0 0 2 2 2 0 HypF finger CwsA PF10814.8 EME69991.1 - 0.014 15.6 1.3 0.015 15.5 1.3 1.0 1 0 0 1 1 1 0 Cell wall synthesis protein CwsA gpW PF02831.15 EME69991.1 - 0.047 13.6 0.7 0.06 13.3 0.7 1.3 1 0 0 1 1 1 0 gpW Phage_portal_2 PF05136.13 EME69992.1 - 2.8e-109 365.6 0.1 3.9e-109 365.1 0.1 1.2 1 0 0 1 1 1 1 Phage portal protein, lambda family DUF1604 PF07713.13 EME69992.1 - 0.1 12.4 0.1 0.24 11.2 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1604) Peptidase_S49 PF01343.18 EME69993.1 - 1.3e-29 103.1 0.2 2.3e-29 102.4 0.2 1.4 1 0 0 1 1 1 1 Peptidase family S49 CLP_protease PF00574.23 EME69993.1 - 0.07 13.0 0.4 0.56 10.1 0.1 2.2 1 1 1 2 2 2 0 Clp protease OKR_DC_1_N PF03709.15 EME69993.1 - 0.12 12.6 0.2 0.65 10.3 0.0 2.1 2 0 0 2 2 2 0 Orn/Lys/Arg decarboxylase, N-terminal domain HDPD PF02924.14 EME69994.1 - 3.9e-29 101.1 0.7 4.4e-29 100.9 0.7 1.0 1 0 0 1 1 1 1 Bacteriophage lambda head decoration protein D Phage_cap_E PF03864.15 EME69995.1 - 3e-91 306.1 0.2 3.5e-91 305.9 0.2 1.0 1 0 0 1 1 1 1 Phage major capsid protein E Ribosomal_L3 PF00297.22 EME69995.1 - 0.063 12.2 0.0 0.1 11.6 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L3 IpaB_EvcA PF03278.13 EME69995.1 - 0.15 11.8 0.0 0.23 11.1 0.0 1.2 1 0 0 1 1 1 0 IpaB/EvcA family Phage_H_T_join PF05521.11 EME69996.1 - 0.089 13.3 0.1 0.098 13.2 0.1 1.2 1 0 0 1 1 1 0 Phage head-tail joining protein Gifsy-2 PF13856.6 EME69996.1 - 0.097 13.0 0.0 0.12 12.8 0.0 1.2 1 0 0 1 1 1 0 ATP-binding sugar transporter from pro-phage IGF2_C PF08365.11 EME69997.1 - 0.22 11.5 1.3 0.47 10.5 0.1 2.2 2 0 0 2 2 2 0 Insulin-like growth factor II E-peptide Acetyltransf_1 PF00583.25 EME69998.1 - 1.6e-06 28.4 0.0 2e-06 28.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 EME69998.1 - 2e-06 28.1 0.0 3e-06 27.5 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 EME69998.1 - 8.1e-06 25.8 0.0 1.8e-05 24.7 0.0 1.5 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 EME69998.1 - 0.013 15.4 0.0 0.024 14.6 0.0 1.4 1 0 0 1 1 1 0 FR47-like protein DUF1778 PF08681.11 EME69999.1 - 1.1e-26 92.5 1.3 1.3e-26 92.3 1.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1778) ParD PF09386.10 EME69999.1 - 0.002 18.4 0.3 0.0036 17.6 0.2 1.5 1 1 0 1 1 1 1 Antitoxin ParD RHH_1 PF01402.21 EME69999.1 - 0.054 13.4 2.8 1.4 9.0 0.1 2.9 3 0 0 3 3 3 0 Ribbon-helix-helix protein, copG family HicB PF05534.12 EME69999.1 - 0.096 12.5 0.0 0.24 11.3 0.0 1.6 1 0 0 1 1 1 0 HicB family Tape_meas_lam_C PF09718.10 EME70003.1 - 7.6e-20 70.8 3.1 7.6e-20 70.8 3.1 3.6 3 0 0 3 3 3 1 Lambda phage tail tape-measure protein (Tape_meas_lam_C) SHOCT PF09851.9 EME70003.1 - 0.0053 16.5 3.1 0.0053 16.5 3.1 3.4 4 0 0 4 4 4 1 Short C-terminal domain TPR_22 PF18833.1 EME70003.1 - 0.077 13.1 0.2 0.18 12.0 0.2 1.5 1 0 0 1 1 1 0 Tetratricopeptide repeat GvpG PF05120.12 EME70003.1 - 0.18 11.8 2.3 1.8 8.7 0.8 3.0 2 0 0 2 2 2 0 Gas vesicle protein G YafQ_toxin PF15738.5 EME70004.1 - 3.3e-32 110.7 0.8 3.8e-32 110.4 0.8 1.0 1 0 0 1 1 1 1 Bacterial toxin of type II toxin-antitoxin system, YafQ ParE_toxin PF05016.15 EME70004.1 - 6.4e-07 29.9 0.4 7.2e-07 29.7 0.4 1.1 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE RelB PF04221.12 EME70005.1 - 1.5e-20 73.0 0.1 1.6e-20 72.8 0.1 1.0 1 0 0 1 1 1 1 RelB antitoxin LPD7 PF18821.1 EME70005.1 - 0.017 15.2 0.0 0.023 14.8 0.0 1.3 1 0 0 1 1 1 0 Large polyvalent protein-associated domain 7 Lipocalin_9 PF17186.4 EME70006.1 - 0.18 12.0 0.0 5.1 7.4 0.0 2.3 2 1 0 2 2 2 0 Lipocalin-like domain FAM196 PF15265.6 EME70007.1 - 0.87 9.0 17.5 1.1 8.7 17.5 1.0 1 0 0 1 1 1 0 FAM196 family TFIIA PF03153.13 EME70007.1 - 4.7 7.1 23.1 5.4 6.9 23.1 1.1 1 0 0 1 1 1 0 Transcription factor IIA, alpha/beta subunit DUF1664 PF07889.12 EME70011.1 - 0.14 12.2 1.9 0.2 11.7 1.9 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) LppA PF16708.5 EME70011.1 - 0.16 11.9 2.4 0.68 9.9 1.7 2.1 1 1 1 2 2 2 0 Lipoprotein confined to pathogenic Mycobacterium DUF1833 PF08875.11 EME70013.1 - 3e-72 241.0 0.1 3.5e-72 240.9 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1833) DUF736 PF05284.12 EME70013.1 - 0.0095 15.8 0.0 0.058 13.3 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF736) PIN PF01850.21 EME70014.1 - 8.8e-15 55.3 0.0 1e-14 55.1 0.0 1.0 1 0 0 1 1 1 1 PIN domain DUF5615 PF18480.1 EME70014.1 - 0.019 14.7 0.0 0.039 13.7 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF5615) DUF4411 PF14367.6 EME70014.1 - 0.15 11.9 0.0 0.17 11.8 0.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4411) PhdYeFM_antitox PF02604.19 EME70015.1 - 2.2e-16 59.4 0.0 2.4e-16 59.3 0.0 1.1 1 0 0 1 1 1 1 Antitoxin Phd_YefM, type II toxin-antitoxin system Dus PF01207.17 EME70015.1 - 0.17 10.9 0.0 0.19 10.8 0.0 1.1 1 0 0 1 1 1 0 Dihydrouridine synthase (Dus) NLPC_P60 PF00877.19 EME70016.1 - 5.5e-06 26.4 0.0 6.7e-06 26.1 0.0 1.1 1 0 0 1 1 1 1 NlpC/P60 family Phage-tail_3 PF13550.6 EME70017.1 - 6.3e-26 91.2 0.0 1.3e-25 90.2 0.0 1.5 1 0 0 1 1 1 1 Putative phage tail protein Lambda_tail_I PF06805.12 EME70017.1 - 1.1e-23 83.3 0.6 3.8e-23 81.6 0.6 2.0 1 0 0 1 1 1 1 Bacteriophage lambda tail assembly protein I DUF3040 PF11239.8 EME70019.1 - 0.054 13.8 3.5 0.61 10.4 0.9 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) RepB PF07506.11 EME70020.1 - 8.1e-35 120.6 3.8 5.3e-34 117.9 3.7 1.9 2 0 0 2 2 2 1 RepB plasmid partitioning protein ParBc PF02195.18 EME70020.1 - 7.8e-08 32.5 0.5 3.8e-07 30.3 0.0 2.3 3 0 0 3 3 3 1 ParB-like nuclease domain DUF3131 PF11329.8 EME70020.1 - 0.011 14.8 0.0 0.066 12.3 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3131) RepB PF07506.11 EME70021.1 - 1.2e-14 54.8 0.1 1.8e-14 54.3 0.1 1.2 1 0 0 1 1 1 1 RepB plasmid partitioning protein ParBc PF02195.18 EME70021.1 - 4.8e-13 49.2 0.1 4.6e-12 46.1 0.1 2.2 2 0 0 2 2 2 1 ParB-like nuclease domain Med14 PF08638.11 EME70021.1 - 0.17 11.3 0.0 0.27 10.6 0.0 1.3 1 0 0 1 1 1 0 Mediator complex subunit MED14 Resolvase PF00239.21 EME70022.1 - 2.6e-21 76.3 0.6 6.9e-21 74.9 0.4 1.8 2 0 0 2 2 2 1 Resolvase, N terminal domain Recombinase PF07508.13 EME70022.1 - 5.2e-20 71.8 0.3 9.9e-20 70.9 0.1 1.6 2 0 0 2 2 2 1 Recombinase Phage_integrase PF00589.22 EME70023.1 - 4.3e-19 68.9 0.0 9.4e-19 67.8 0.0 1.6 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_3 PF14659.6 EME70023.1 - 3.6e-07 30.4 0.0 5.9e-07 29.7 0.0 1.4 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Arm-DNA-bind_3 PF13356.6 EME70023.1 - 0.00072 19.9 0.6 0.0035 17.7 0.3 2.3 2 0 0 2 2 2 1 Arm DNA-binding domain Phage_int_SAM_4 PF13495.6 EME70023.1 - 0.0038 17.7 0.1 0.01 16.3 0.1 1.7 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain TetR_C_24 PF17932.1 EME70024.1 - 9.7e-21 74.2 0.0 1.1e-20 74.1 0.0 1.0 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_7 PF14246.6 EME70024.1 - 0.00016 21.7 0.0 0.00017 21.6 0.0 1.1 1 0 0 1 1 1 1 AefR-like transcriptional repressor, C-terminal domain TetR_C_6 PF13977.6 EME70024.1 - 0.0011 19.2 0.1 0.0012 19.0 0.1 1.1 1 0 0 1 1 1 1 BetI-type transcriptional repressor, C-terminal TetR_C_27 PF17935.1 EME70024.1 - 0.014 15.5 0.0 0.019 15.0 0.0 1.2 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain TetR_C_29 PF17938.1 EME70024.1 - 0.19 11.8 0.0 0.21 11.7 0.0 1.1 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain Biotin_lipoyl_2 PF13533.6 EME70025.1 - 0.0001 22.1 0.1 0.018 14.8 0.0 2.8 2 1 1 3 3 3 2 Biotin-lipoyl like Biotin_lipoyl PF00364.22 EME70025.1 - 0.016 15.1 0.2 0.04 13.8 0.2 1.7 1 1 0 1 1 1 0 Biotin-requiring enzyme XdhC_C PF13478.6 EME70025.1 - 0.035 14.6 0.0 0.071 13.6 0.0 1.7 1 1 0 1 1 1 0 XdhC Rossmann domain Peptidase_M23 PF01551.22 EME70025.1 - 0.16 12.2 0.1 0.93 9.7 0.0 2.1 1 1 1 2 2 2 0 Peptidase family M23 HlyD_3 PF13437.6 EME70025.1 - 0.24 12.1 2.2 21 5.9 0.0 2.7 2 1 1 3 3 3 0 HlyD family secretion protein 4HBT PF03061.22 EME70026.1 - 3e-11 43.5 0.0 4.5e-11 42.9 0.0 1.3 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.6 EME70026.1 - 1.4e-05 25.2 0.0 1.6e-05 25.1 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) 4HBT_3 PF13622.6 EME70026.1 - 0.0014 18.9 0.1 0.0017 18.7 0.1 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily ECH_1 PF00378.20 EME70027.1 - 3.1e-52 177.4 0.8 3.5e-52 177.2 0.8 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 EME70027.1 - 9.9e-28 97.6 2.7 1.5e-24 87.1 1.6 2.0 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase STAS_2 PF13466.6 EME70028.1 - 1.2e-09 38.3 0.0 1.4e-09 38.1 0.0 1.1 1 0 0 1 1 1 1 STAS domain STAS PF01740.21 EME70028.1 - 1.3e-08 34.5 0.0 1.6e-08 34.2 0.0 1.2 1 0 0 1 1 1 1 STAS domain NIT PF08376.10 EME70029.1 - 1.3e-52 179.6 2.3 1.3e-52 179.6 2.3 3.5 2 1 1 3 3 3 1 Nitrate and nitrite sensing MCPsignal PF00015.21 EME70029.1 - 2.3e-34 118.7 47.6 2.9e-33 115.1 27.2 3.8 3 1 1 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 EME70029.1 - 1.6e-09 38.0 5.2 1.7e-09 37.9 0.2 3.6 3 0 0 3 3 3 1 HAMP domain DUF948 PF06103.11 EME70029.1 - 0.0039 17.4 27.0 0.28 11.5 3.0 5.6 3 1 2 5 5 5 4 Bacterial protein of unknown function (DUF948) TarH PF02203.15 EME70029.1 - 0.006 16.5 0.0 0.006 16.5 0.0 3.9 4 0 0 4 4 4 1 Tar ligand binding domain homologue DUF1664 PF07889.12 EME70029.1 - 0.51 10.4 11.7 8.5 6.4 3.6 3.9 2 1 1 3 3 3 0 Protein of unknown function (DUF1664) Laminin_II PF06009.12 EME70029.1 - 8.9 6.3 26.3 1.9 8.5 3.0 4.6 2 1 3 5 5 5 0 Laminin Domain II SoxZ PF08770.11 EME70030.1 - 1.2e-30 105.2 0.0 1.4e-30 104.9 0.0 1.1 1 0 0 1 1 1 1 Sulphur oxidation protein SoxZ SoxY PF13501.6 EME70031.1 - 1.4e-33 115.4 0.0 1.8e-33 115.1 0.0 1.1 1 0 0 1 1 1 1 Sulfur oxidation protein SoxY EFP_N PF08207.12 EME70031.1 - 0.022 14.8 0.0 0.21 11.6 0.0 2.2 2 1 0 2 2 2 0 Elongation factor P (EF-P) KOW-like domain T2SSM_b PF10741.9 EME70031.1 - 0.084 12.7 0.0 0.11 12.3 0.0 1.2 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein M subtype b Sulf_transp PF04143.14 EME70032.1 - 5.7e-65 219.9 40.2 5.7e-65 219.9 40.2 1.4 2 0 0 2 2 2 1 Sulphur transport TusA PF01206.17 EME70033.1 - 6.5e-24 83.5 0.0 7.1e-24 83.4 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.9 EME70033.1 - 0.072 13.0 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2249) Amidase_2 PF01510.25 EME70034.1 - 2.9e-33 115.0 0.0 3.9e-33 114.6 0.0 1.1 1 0 0 1 1 1 1 N-acetylmuramoyl-L-alanine amidase EamA PF00892.20 EME70035.1 - 5.4e-35 120.5 38.9 1.9e-19 70.2 11.5 2.1 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.16 EME70035.1 - 8.3e-08 31.9 4.9 1.1e-07 31.5 4.9 1.1 1 0 0 1 1 1 1 Triose-phosphate Transporter family Mg_trans_NIPA PF05653.14 EME70035.1 - 0.052 12.7 4.5 0.3 10.2 0.2 2.3 2 0 0 2 2 2 0 Magnesium transporter NIPA Nuc_sug_transp PF04142.15 EME70035.1 - 0.73 8.9 4.7 0.16 11.1 0.5 2.1 2 1 1 3 3 3 0 Nucleotide-sugar transporter UAA PF08449.11 EME70035.1 - 4.2 6.5 7.6 6.1 6.0 3.2 2.2 2 0 0 2 2 2 0 UAA transporter family ABC_tran PF00005.27 EME70036.1 - 1.2e-45 155.4 0.0 2.4e-21 76.7 0.0 2.8 2 0 0 2 2 2 2 ABC transporter ABC_tran_CTD PF16326.5 EME70036.1 - 6.6e-20 71.1 3.5 6.6e-20 71.1 3.5 1.7 2 0 0 2 2 1 1 ABC transporter C-terminal domain AAA_21 PF13304.6 EME70036.1 - 1.2e-16 61.4 6.1 0.00037 20.4 0.2 4.3 2 2 2 4 4 4 4 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 EME70036.1 - 1.6e-09 37.5 0.1 0.055 12.9 0.0 3.6 4 0 0 4 4 4 3 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 EME70036.1 - 1.4e-08 35.3 0.6 0.00026 21.4 0.0 2.9 3 0 0 3 3 2 2 AAA ATPase domain AAA_29 PF13555.6 EME70036.1 - 2.9e-08 33.3 0.2 0.0006 19.5 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_15 PF13175.6 EME70036.1 - 1.3e-06 28.4 0.4 0.0028 17.5 0.1 2.3 2 0 0 2 2 2 2 AAA ATPase domain RsgA_GTPase PF03193.16 EME70036.1 - 1.5e-06 28.3 0.1 0.039 13.8 0.0 2.5 2 0 0 2 2 2 2 RsgA GTPase AAA_23 PF13476.6 EME70036.1 - 2.7e-06 28.0 4.9 0.017 15.6 0.0 2.6 3 0 0 3 3 2 2 AAA domain MMR_HSR1 PF01926.23 EME70036.1 - 2.8e-06 27.4 0.1 0.12 12.5 0.0 2.5 2 0 0 2 2 2 2 50S ribosome-binding GTPase NACHT PF05729.12 EME70036.1 - 6.8e-06 26.1 0.0 0.08 12.9 0.0 2.7 2 0 0 2 2 2 2 NACHT domain AAA_25 PF13481.6 EME70036.1 - 1.5e-05 24.7 5.9 0.00076 19.1 0.1 3.7 4 1 0 4 4 2 1 AAA domain Zeta_toxin PF06414.12 EME70036.1 - 2.7e-05 23.6 0.1 0.018 14.3 0.0 2.4 2 0 0 2 2 2 1 Zeta toxin AAA_33 PF13671.6 EME70036.1 - 2.9e-05 24.3 2.1 0.026 14.7 0.0 3.1 4 0 0 4 4 2 2 AAA domain AAA_22 PF13401.6 EME70036.1 - 7e-05 23.1 3.6 0.29 11.4 0.0 3.8 3 1 0 3 3 3 2 AAA domain AAA PF00004.29 EME70036.1 - 0.00033 21.1 0.2 0.65 10.4 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 EME70036.1 - 0.0005 19.8 5.4 0.32 10.7 0.0 3.3 3 1 0 3 3 3 2 AAA domain AAA_24 PF13479.6 EME70036.1 - 0.00067 19.4 0.2 0.48 10.1 0.0 2.4 2 0 0 2 2 2 1 AAA domain RNA_helicase PF00910.22 EME70036.1 - 0.00074 19.9 0.0 0.91 9.9 0.0 2.5 2 0 0 2 2 2 1 RNA helicase Roc PF08477.13 EME70036.1 - 0.00087 19.5 0.0 0.87 9.8 0.0 2.3 2 0 0 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase TsaE PF02367.17 EME70036.1 - 0.0012 18.8 0.2 0.27 11.2 0.0 2.4 2 0 0 2 2 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE ATP-synt_ab PF00006.25 EME70036.1 - 0.0015 18.2 0.1 1.9 8.1 0.0 2.2 2 0 0 2 2 2 2 ATP synthase alpha/beta family, nucleotide-binding domain AAA_18 PF13238.6 EME70036.1 - 0.0017 18.9 0.5 2 9.0 0.0 3.2 3 0 0 3 3 2 1 AAA domain AAA_5 PF07728.14 EME70036.1 - 0.0021 18.1 0.2 1.8 8.5 0.0 2.7 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) cobW PF02492.19 EME70036.1 - 0.0026 17.4 0.9 0.68 9.5 0.1 2.3 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain MeaB PF03308.16 EME70036.1 - 0.0028 16.7 0.9 0.14 11.1 0.1 2.2 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB PduV-EutP PF10662.9 EME70036.1 - 0.0051 16.6 1.1 1.4 8.7 0.1 2.3 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation AAA_28 PF13521.6 EME70036.1 - 0.0054 17.0 3.7 0.56 10.4 0.1 3.2 3 0 0 3 3 2 1 AAA domain MobB PF03205.14 EME70036.1 - 0.0068 16.3 0.3 0.99 9.3 0.1 2.4 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B IstB_IS21 PF01695.17 EME70036.1 - 0.012 15.4 1.2 2 8.1 0.1 3.0 3 0 0 3 3 3 0 IstB-like ATP binding protein AAA_7 PF12775.7 EME70036.1 - 0.016 14.7 0.1 4.6 6.7 0.0 2.2 2 0 0 2 2 2 0 P-loop containing dynein motor region MukB PF04310.12 EME70036.1 - 0.02 14.7 0.1 2.9 7.6 0.0 2.3 2 0 0 2 2 2 0 MukB N-terminal NTPase_1 PF03266.15 EME70036.1 - 0.031 14.2 0.3 3.9 7.4 0.0 2.5 2 0 0 2 2 2 0 NTPase Rad17 PF03215.15 EME70036.1 - 0.039 13.9 0.0 5.5 6.9 0.0 2.3 2 0 0 2 2 2 0 Rad17 P-loop domain RuvB_N PF05496.12 EME70036.1 - 0.042 13.6 0.1 3.8 7.2 0.0 2.4 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain DUF87 PF01935.17 EME70036.1 - 0.043 13.9 0.2 2.4 8.2 0.0 2.4 2 0 0 2 2 2 0 Helicase HerA, central domain Dynamin_N PF00350.23 EME70036.1 - 0.045 13.8 0.1 4.8 7.2 0.0 2.7 2 0 0 2 2 2 0 Dynamin family AAA_13 PF13166.6 EME70036.1 - 0.067 11.8 2.2 6 5.4 0.0 2.9 3 0 0 3 3 3 0 AAA domain AAA_14 PF13173.6 EME70036.1 - 0.09 12.8 0.1 8.1 6.5 0.0 2.8 3 0 0 3 3 2 0 AAA domain SRP54 PF00448.22 EME70036.1 - 0.1 12.2 0.5 12 5.5 0.2 2.3 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain NB-ARC PF00931.22 EME70036.1 - 0.12 11.6 0.4 13 4.9 0.1 2.3 2 0 0 2 2 2 0 NB-ARC domain DUF815 PF05673.13 EME70036.1 - 0.12 11.5 0.1 3.6 6.7 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF815) Mg_chelatase PF01078.21 EME70036.1 - 0.12 11.7 0.5 12 5.2 0.1 2.4 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI T2SSE PF00437.20 EME70036.1 - 0.14 11.2 0.6 17 4.4 0.1 2.4 2 1 0 2 2 2 0 Type II/IV secretion system protein CLP1_P PF16575.5 EME70036.1 - 0.17 11.7 0.1 20 4.9 0.0 2.4 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop Arf PF00025.21 EME70036.1 - 0.21 11.0 0.2 6.6 6.2 0.1 2.3 2 0 0 2 2 2 0 ADP-ribosylation factor family dNK PF01712.19 EME70036.1 - 0.33 10.8 0.4 22 4.8 0.0 2.3 2 0 0 2 2 2 0 Deoxynucleoside kinase AAA_19 PF13245.6 EME70036.1 - 4.1 7.7 4.5 21 5.4 0.2 3.0 3 0 0 3 3 3 0 AAA domain Hemerythrin PF01814.23 EME70037.1 - 4.2e-05 24.2 6.3 5.3e-05 23.8 6.3 1.2 1 0 0 1 1 1 1 Hemerythrin HHE cation binding domain K_trans PF02705.16 EME70039.1 - 4.6e-205 682.2 10.6 5.5e-205 681.9 10.6 1.0 1 0 0 1 1 1 1 K+ potassium transporter K_trans PF02705.16 EME70040.1 - 7.5e-212 704.6 19.9 8.8e-212 704.3 19.9 1.0 1 0 0 1 1 1 1 K+ potassium transporter DUF3094 PF11293.8 EME70040.1 - 0.63 9.8 5.7 0.44 10.3 0.5 3.4 3 0 0 3 3 3 0 Protein of unknown function (DUF3094) SIR2 PF02146.17 EME70041.1 - 3.4e-46 157.4 0.0 4e-46 157.2 0.0 1.1 1 0 0 1 1 1 1 Sir2 family Glyco_transf_28 PF03033.20 EME70041.1 - 0.0024 17.9 0.1 0.0046 17.0 0.1 1.4 1 0 0 1 1 1 1 Glycosyltransferase family 28 N-terminal domain Tmemb_55A PF09788.9 EME70041.1 - 0.028 13.5 0.1 0.036 13.2 0.1 1.1 1 0 0 1 1 1 0 Transmembrane protein 55A Mu-like_Com PF10122.9 EME70041.1 - 0.048 13.1 0.9 0.11 12.0 0.9 1.6 1 0 0 1 1 1 0 Mu-like prophage protein Com HypA PF01155.19 EME70041.1 - 0.13 12.3 0.1 0.23 11.5 0.1 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA LMWPc PF01451.21 EME70042.1 - 6.7e-41 140.0 0.0 7.6e-41 139.8 0.0 1.0 1 0 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase Hemerythrin PF01814.23 EME70044.1 - 4.2e-08 33.9 3.1 4.9e-08 33.7 0.5 2.5 2 0 0 2 2 2 1 Hemerythrin HHE cation binding domain CBS PF00571.28 EME70046.1 - 1.4e-26 92.7 3.9 1.7e-14 54.0 1.2 2.1 2 0 0 2 2 2 2 CBS domain VAPB_antitox PF02697.14 EME70046.1 - 0.15 12.9 0.2 2.5 9.0 0.1 2.6 3 0 0 3 3 3 0 Putative antitoxin Ank_5 PF13857.6 EME70047.1 - 1.7e-05 25.0 0.1 3.6e-05 24.0 0.1 1.6 1 0 0 1 1 1 1 Ankyrin repeats (many copies) Ank_2 PF12796.7 EME70047.1 - 0.0017 18.9 0.0 0.0036 17.9 0.0 1.6 1 0 0 1 1 1 1 Ankyrin repeats (3 copies) Ank_3 PF13606.6 EME70047.1 - 0.0061 17.0 0.0 1.9 9.3 0.0 2.9 2 0 0 2 2 2 1 Ankyrin repeat Ank_4 PF13637.6 EME70047.1 - 0.02 15.4 0.0 0.067 13.8 0.0 2.0 1 1 1 2 2 2 0 Ankyrin repeats (many copies) Ank PF00023.30 EME70047.1 - 0.027 14.9 0.2 8.3 7.1 0.1 2.7 2 0 0 2 2 2 0 Ankyrin repeat ABC_tran PF00005.27 EME70048.1 - 6.3e-51 172.5 0.2 2.8e-24 86.2 0.0 3.0 3 1 0 3 3 2 2 ABC transporter AAA_21 PF13304.6 EME70048.1 - 1.4e-16 61.2 5.7 8.7e-05 22.5 0.0 4.4 3 1 1 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system ABC_tran_Xtn PF12848.7 EME70048.1 - 1.7e-14 53.6 3.9 1.5e-12 47.4 0.4 2.8 3 0 0 3 3 3 1 ABC transporter SMC_N PF02463.19 EME70048.1 - 6.5e-09 35.5 2.5 0.31 10.5 0.0 4.3 4 0 0 4 4 4 3 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 EME70048.1 - 1.4e-05 25.7 0.1 1.4e-05 25.7 0.1 3.4 4 0 0 4 4 3 1 AAA domain AAA_29 PF13555.6 EME70048.1 - 2e-05 24.2 1.0 0.054 13.2 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain MMR_HSR1 PF01926.23 EME70048.1 - 2.1e-05 24.6 0.2 0.045 13.8 0.0 2.5 2 0 0 2 2 2 2 50S ribosome-binding GTPase AAA_18 PF13238.6 EME70048.1 - 6.6e-05 23.5 0.0 0.27 11.8 0.0 3.1 2 1 0 2 2 2 2 AAA domain NB-ARC PF00931.22 EME70048.1 - 7.7e-05 22.0 0.0 0.037 13.2 0.0 2.5 2 1 0 2 2 2 2 NB-ARC domain AAA_22 PF13401.6 EME70048.1 - 0.00019 21.7 2.2 0.29 11.4 0.3 3.5 2 2 0 2 2 2 1 AAA domain Dynamin_N PF00350.23 EME70048.1 - 0.00054 20.1 0.0 0.66 10.0 0.0 2.6 3 0 0 3 3 2 2 Dynamin family DLIC PF05783.11 EME70048.1 - 0.00089 18.2 0.2 0.13 11.0 0.0 2.2 2 0 0 2 2 2 1 Dynein light intermediate chain (DLIC) AAA_28 PF13521.6 EME70048.1 - 0.00094 19.5 1.5 0.2 11.9 0.0 2.9 3 0 0 3 3 2 1 AAA domain RsgA_GTPase PF03193.16 EME70048.1 - 0.0013 18.7 0.2 0.56 10.1 0.0 2.4 2 0 0 2 2 2 1 RsgA GTPase AAA_24 PF13479.6 EME70048.1 - 0.0017 18.1 0.8 1.6 8.4 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_13 PF13166.6 EME70048.1 - 0.0035 16.1 2.7 0.29 9.7 0.0 3.2 3 1 0 3 3 3 1 AAA domain AAA_33 PF13671.6 EME70048.1 - 0.004 17.3 1.0 0.81 9.9 0.1 2.8 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.6 EME70048.1 - 0.0077 16.6 6.7 0.26 11.7 0.1 3.6 2 2 1 3 3 3 1 AAA ATPase domain AAA_27 PF13514.6 EME70048.1 - 0.0078 15.8 0.2 1 8.9 0.0 2.5 2 0 0 2 2 2 1 AAA domain SbcCD_C PF13558.6 EME70048.1 - 0.0095 16.1 1.5 10 6.4 0.0 3.9 2 2 0 2 2 2 0 Putative exonuclease SbcCD, C subunit MeaB PF03308.16 EME70048.1 - 0.022 13.7 0.5 0.25 10.3 0.1 2.2 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA PF00004.29 EME70048.1 - 0.041 14.3 0.3 2.1 8.8 0.2 3.0 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Roc PF08477.13 EME70048.1 - 0.043 14.0 2.2 2.2 8.5 0.0 3.1 4 0 0 4 4 3 0 Ras of Complex, Roc, domain of DAPkinase AAA_30 PF13604.6 EME70048.1 - 0.05 13.3 5.6 2.4 7.9 0.3 2.6 2 1 0 2 2 2 0 AAA domain AAA_14 PF13173.6 EME70048.1 - 0.053 13.5 0.0 7.1 6.7 0.0 3.0 4 0 0 4 4 2 0 AAA domain cobW PF02492.19 EME70048.1 - 0.059 13.0 3.0 1.5 8.4 0.5 2.4 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain FeoB_N PF02421.18 EME70048.1 - 0.06 12.9 0.9 0.87 9.1 0.1 2.4 2 0 0 2 2 2 0 Ferrous iron transport protein B AAA_17 PF13207.6 EME70048.1 - 0.082 13.3 1.5 4.2 7.8 0.5 2.8 2 1 0 2 2 2 0 AAA domain AAA_15 PF13175.6 EME70048.1 - 0.11 12.2 0.0 4.7 6.8 0.0 2.4 2 0 0 2 2 2 0 AAA ATPase domain AAA_25 PF13481.6 EME70048.1 - 0.16 11.5 1.8 12 5.4 0.0 3.6 3 1 0 3 3 3 0 AAA domain Arf PF00025.21 EME70048.1 - 0.18 11.3 1.9 7.5 6.0 0.2 2.5 2 0 0 2 2 2 0 ADP-ribosylation factor family TsaE PF02367.17 EME70048.1 - 0.23 11.4 1.5 1.4 8.9 0.0 2.4 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE NACHT PF05729.12 EME70048.1 - 0.27 11.1 3.8 7 6.5 0.2 2.6 2 0 0 2 2 2 0 NACHT domain ATP_bind_1 PF03029.17 EME70048.1 - 0.45 10.2 1.2 24 4.6 0.1 2.7 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein DUF3584 PF12128.8 EME70048.1 - 1.1 6.7 8.1 0.37 8.3 0.0 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF3584) HOOK PF05622.12 EME70048.1 - 5.8 4.9 6.8 0.45 8.6 0.3 1.9 2 0 0 2 2 2 0 HOOK protein RNB PF00773.19 EME70050.1 - 4.1e-92 309.0 0.0 5.1e-92 308.7 0.0 1.1 1 0 0 1 1 1 1 RNB domain S1 PF00575.23 EME70050.1 - 6.2e-10 39.3 0.3 1.4e-09 38.1 0.0 1.8 2 0 0 2 2 2 1 S1 RNA binding domain CSD2 PF17876.1 EME70050.1 - 4.4e-07 30.0 0.1 1.6e-05 24.9 0.0 3.0 3 0 0 3 3 3 1 Cold shock domain Peptidase_S41 PF03572.18 EME70051.1 - 1.6e-43 148.2 0.0 2.5e-43 147.5 0.0 1.3 1 0 0 1 1 1 1 Peptidase family S41 PDZ_6 PF17820.1 EME70051.1 - 3e-14 52.6 1.8 1.8e-13 50.1 1.5 2.6 2 0 0 2 2 2 1 PDZ domain PDZ_2 PF13180.6 EME70051.1 - 5.1e-12 45.9 0.1 1.1e-11 44.9 0.1 1.6 1 0 0 1 1 1 1 PDZ domain PDZ PF00595.24 EME70051.1 - 1.7e-06 28.3 0.1 3.9e-06 27.1 0.1 1.6 1 0 0 1 1 1 1 PDZ domain Tricorn_PDZ PF14685.6 EME70051.1 - 0.0041 17.1 0.2 0.025 14.5 0.0 2.1 2 0 0 2 2 2 1 Tricorn protease PDZ domain MaoC_dehydrat_N PF13452.6 EME70052.1 - 1.3e-11 44.8 0.0 1.9e-10 41.0 0.0 2.1 2 0 0 2 2 2 1 N-terminal half of MaoC dehydratase adh_short_C2 PF13561.6 EME70053.1 - 4.8e-62 209.6 1.1 5.5e-62 209.4 1.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 EME70053.1 - 4.8e-54 182.8 0.5 6.4e-54 182.4 0.5 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 EME70053.1 - 1.2e-11 44.9 0.6 1.8e-11 44.3 0.3 1.4 2 0 0 2 2 2 1 KR domain NAD_binding_10 PF13460.6 EME70053.1 - 7.3e-07 29.3 2.2 1e-06 28.8 2.2 1.2 1 0 0 1 1 1 1 NAD(P)H-binding Epimerase PF01370.21 EME70053.1 - 0.00045 19.8 0.3 0.00075 19.0 0.3 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family DFP PF04127.15 EME70053.1 - 0.0021 17.9 1.2 0.0027 17.6 0.3 1.6 2 0 0 2 2 2 1 DNA / pantothenate metabolism flavoprotein THF_DHG_CYH_C PF02882.19 EME70053.1 - 0.0034 16.7 0.8 0.012 15.0 0.1 2.1 1 1 0 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain TrkA_N PF02254.18 EME70053.1 - 0.038 14.2 0.3 0.064 13.5 0.3 1.3 1 0 0 1 1 1 0 TrkA-N domain baeRF_family2 PF18844.1 EME70053.1 - 0.041 13.9 0.8 0.079 13.0 0.8 1.4 1 0 0 1 1 1 0 Bacterial archaeo-eukaryotic release factor family 2 NmrA PF05368.13 EME70053.1 - 0.087 12.4 1.1 0.14 11.7 1.1 1.3 1 0 0 1 1 1 0 NmrA-like family DUF1776 PF08643.10 EME70053.1 - 0.094 12.1 0.0 0.13 11.6 0.0 1.1 1 0 0 1 1 1 0 Fungal family of unknown function (DUF1776) KRTDAP PF15200.6 EME70054.1 - 0.028 14.2 0.0 0.047 13.5 0.0 1.3 1 0 0 1 1 1 0 Keratinocyte differentiation-associated CBS PF00571.28 EME70055.1 - 8.9e-23 80.5 2.4 3.1e-15 56.4 0.5 2.1 2 0 0 2 2 2 2 CBS domain IMPDH PF00478.25 EME70055.1 - 0.0071 15.4 2.9 0.0085 15.1 2.0 1.5 1 1 1 2 2 2 1 IMP dehydrogenase / GMP reductase domain Sugar-bind PF04198.13 EME70055.1 - 0.038 13.1 0.1 0.095 11.8 0.0 1.6 2 0 0 2 2 2 0 Putative sugar-binding domain IF3_N PF05198.16 EME70055.1 - 0.098 12.9 0.3 4.5 7.6 0.1 2.4 2 1 0 2 2 2 0 Translation initiation factor IF-3, N-terminal domain ACT PF01842.25 EME70055.1 - 0.11 12.4 0.7 0.93 9.3 0.1 2.5 3 0 0 3 3 3 0 ACT domain EB_dh PF09459.10 EME70056.1 - 2e-43 149.2 0.0 2.6e-41 142.3 0.0 2.0 1 1 0 1 1 1 1 Ethylbenzene dehydrogenase Cytochrome_CBB3 PF13442.6 EME70057.1 - 1.4e-12 47.8 0.1 1e-05 25.8 0.0 2.4 2 0 0 2 2 2 2 Cytochrome C oxidase, cbb3-type, subunit III Cytochrom_C PF00034.21 EME70057.1 - 4.3e-12 47.0 0.5 0.00014 22.9 0.0 3.3 2 2 0 2 2 2 2 Cytochrome c Lon_2 PF13337.6 EME70057.1 - 0.0074 14.9 0.0 0.011 14.4 0.0 1.1 1 0 0 1 1 1 1 Putative ATP-dependent Lon protease Cytochrome_C7 PF14522.6 EME70057.1 - 0.064 13.3 0.0 15 5.7 0.0 2.3 2 0 0 2 2 2 0 Cytochrome c7 and related cytochrome c DUF179 PF02622.15 EME70058.1 - 7.6e-46 156.0 0.0 8.7e-46 155.8 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized ACR, COG1678 Cation_efflux PF01545.21 EME70059.1 - 3.3e-36 124.9 12.6 3.9e-36 124.6 12.6 1.1 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 EME70059.1 - 7.8e-25 86.8 0.3 1.2e-24 86.2 0.3 1.3 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter Putative_PNPOx PF01243.20 EME70060.1 - 1.3e-25 89.4 0.0 1.9e-25 88.9 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase PNP_phzG_C PF10590.9 EME70060.1 - 1.5e-15 57.0 6.3 2.6e-15 56.2 6.3 1.4 1 0 0 1 1 1 1 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region Pyridox_oxase_2 PF12766.7 EME70060.1 - 9.5e-06 26.2 0.0 1.5e-05 25.5 0.0 1.3 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyrid_ox_like PF16242.5 EME70060.1 - 0.036 13.6 0.0 0.052 13.1 0.0 1.3 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase like 17kDa_Anti_2 PF16998.5 EME70061.1 - 4.5e-13 49.1 0.4 5.8e-13 48.8 0.4 1.2 1 0 0 1 1 1 1 17 kDa outer membrane surface antigen Rick_17kDa_Anti PF05433.15 EME70061.1 - 1.9e-08 34.0 18.5 3.5e-08 33.2 18.5 1.5 1 0 0 1 1 1 1 Glycine zipper 2TM domain DUF5061 PF16587.5 EME70061.1 - 5.8e-05 23.1 0.4 5.8e-05 23.1 0.4 1.8 1 1 1 2 2 2 1 17 kDa common-antigen outer membrane protein Gly-zipper_Omp PF13488.6 EME70061.1 - 0.0037 17.2 15.8 0.013 15.5 15.4 2.0 1 1 1 2 2 2 2 Glycine zipper Gly-zipper_YMGG PF13441.6 EME70061.1 - 0.0046 16.7 16.2 0.0079 15.9 16.2 1.4 1 0 0 1 1 1 1 YMGG-like Gly-zipper DUF456 PF04306.13 EME70061.1 - 0.017 15.4 2.2 0.021 15.1 2.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF456) TraT PF05818.12 EME70061.1 - 0.44 10.2 1.6 0.52 10.0 1.6 1.2 1 0 0 1 1 1 0 Enterobacterial TraT complement resistance protein Gly-zipper_OmpA PF13436.6 EME70061.1 - 7.2 6.5 20.4 5.2 6.9 3.3 2.4 1 1 1 2 2 2 0 Glycine-zipper domain Bacteriocin_IIc PF10439.9 EME70061.1 - 7.9 6.7 18.3 1.2e+02 3.0 18.3 2.2 1 1 0 1 1 1 0 Bacteriocin class II with double-glycine leader peptide DnaJ_C PF01556.18 EME70062.1 - 1.7e-33 115.8 0.0 2.5e-33 115.2 0.0 1.2 1 0 0 1 1 1 1 DnaJ C terminal domain DnaJ PF00226.31 EME70062.1 - 6.5e-24 83.8 0.1 1.3e-23 82.9 0.1 1.5 1 0 0 1 1 1 1 DnaJ domain Cofac_haem_bdg PF04187.13 EME70063.1 - 1.6e-51 175.4 2.3 1.9e-51 175.1 2.3 1.1 1 0 0 1 1 1 1 Haem-binding uptake, Tiki superfamily, ChaN TraB PF01963.17 EME70063.1 - 0.12 12.2 0.2 0.31 10.9 0.1 1.7 2 0 0 2 2 2 0 TraB family NMT1_3 PF16868.5 EME70064.1 - 9.8e-90 300.9 0.9 1.1e-89 300.7 0.9 1.0 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.11 EME70064.1 - 2.7e-08 34.0 0.1 4.9e-08 33.2 0.1 1.5 1 0 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.7 EME70064.1 - 6.3e-08 32.5 0.3 1.3e-07 31.5 0.2 1.4 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein SBP_bac_3 PF00497.20 EME70064.1 - 0.00028 20.4 0.1 0.00092 18.7 0.1 1.7 2 0 0 2 2 2 1 Bacterial extracellular solute-binding proteins, family 3 DctM PF06808.12 EME70065.1 - 6.6e-89 298.6 50.9 8.7e-62 209.3 15.0 2.3 1 1 1 2 2 2 2 Tripartite ATP-independent periplasmic transporter, DctM component TrbI PF03743.14 EME70065.1 - 0.13 12.0 0.4 0.27 11.0 0.0 1.7 2 0 0 2 2 2 0 Bacterial conjugation TrbI-like protein DUF1850 PF08905.11 EME70066.1 - 8.6e-25 86.9 0.0 1e-24 86.7 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1850) FlhE PF06366.13 EME70066.1 - 0.24 11.4 2.8 0.17 11.9 0.4 2.0 1 1 1 2 2 2 0 Flagellar protein FlhE DctM PF06808.12 EME70067.1 - 1.7e-131 438.9 56.9 1.9e-131 438.7 56.9 1.0 1 0 0 1 1 1 1 Tripartite ATP-independent periplasmic transporter, DctM component FAM176 PF14851.6 EME70067.1 - 0.2 11.3 0.9 1.4 8.6 0.0 2.2 2 0 0 2 2 2 0 FAM176 family CitMHS PF03600.16 EME70067.1 - 4.3 6.4 63.3 0.43 9.7 54.6 2.2 1 1 1 2 2 2 0 Citrate transporter DctQ PF04290.12 EME70068.1 - 1.2e-21 77.0 11.3 7.7e-21 74.4 11.3 2.0 1 1 0 1 1 1 1 Tripartite ATP-independent periplasmic transporters, DctQ component DctP PF03480.13 EME70069.1 - 4e-106 354.5 0.1 4.6e-106 354.3 0.1 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein, family 7 HATPase_c PF02518.26 EME70070.1 - 1.3e-19 70.7 0.0 2.3e-19 69.9 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 EME70070.1 - 7.1e-17 61.4 0.0 2.5e-16 59.7 0.0 2.0 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.7 EME70070.1 - 6.6e-12 45.6 0.0 1.3e-11 44.7 0.0 1.5 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.10 EME70070.1 - 7.7e-12 45.4 0.1 2.7e-11 43.7 0.1 2.0 1 0 0 1 1 1 1 PAS fold HisKA PF00512.25 EME70070.1 - 2.4e-08 33.9 0.5 6.8e-08 32.4 0.0 2.1 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_3 PF08447.12 EME70070.1 - 7.4e-08 32.6 0.0 1.7e-07 31.4 0.0 1.7 1 0 0 1 1 1 1 PAS fold HATPase_c_5 PF14501.6 EME70070.1 - 1.8e-06 27.8 0.0 3.4e-06 26.9 0.0 1.4 1 0 0 1 1 1 1 GHKL domain PAS_8 PF13188.7 EME70070.1 - 2e-06 27.7 0.0 8.8e-06 25.6 0.0 2.1 2 0 0 2 2 2 1 PAS domain DUF3188 PF11384.8 EME70070.1 - 0.0017 18.0 0.3 0.0075 16.0 0.1 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF3188) HATPase_c_3 PF13589.6 EME70070.1 - 0.0036 17.1 0.0 0.0063 16.3 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 EME70070.1 - 0.074 13.0 0.0 0.17 11.9 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain DUF4010 PF13194.6 EME70070.1 - 0.15 11.8 0.7 14 5.3 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4010) Response_reg PF00072.24 EME70071.1 - 3.5e-26 91.6 0.0 5.7e-26 90.9 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain GerE PF00196.19 EME70071.1 - 2.6e-18 65.3 0.7 4.6e-18 64.5 0.5 1.5 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 EME70071.1 - 0.0036 16.9 0.2 0.0062 16.2 0.2 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 FleQ PF06490.11 EME70071.1 - 0.0038 17.6 0.0 0.0068 16.8 0.0 1.5 1 1 0 1 1 1 1 Flagellar regulatory protein FleQ HTH_23 PF13384.6 EME70071.1 - 0.023 14.5 0.0 0.055 13.3 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain Pox_I3 PF04661.12 EME70071.1 - 0.06 12.4 0.0 0.079 12.1 0.0 1.1 1 0 0 1 1 1 0 Poxvirus I3 ssDNA-binding protein Response_reg PF00072.24 EME70072.1 - 5.8e-27 94.1 0.0 9.9e-27 93.3 0.0 1.4 1 0 0 1 1 1 1 Response regulator receiver domain GerE PF00196.19 EME70072.1 - 9.6e-19 66.7 0.5 1.4e-18 66.1 0.5 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 EME70072.1 - 8.7e-09 34.9 1.3 2.5e-08 33.4 0.4 2.1 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_23 PF13384.6 EME70072.1 - 6.2e-05 22.7 0.0 0.00018 21.2 0.0 1.8 1 0 0 1 1 1 1 Homeodomain-like domain GFO_IDH_MocA PF01408.22 EME70072.1 - 0.02 15.7 0.0 0.057 14.2 0.0 1.8 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold Sigma70_ECF PF07638.11 EME70072.1 - 0.022 14.7 0.3 0.036 13.9 0.3 1.4 1 1 0 1 1 1 0 ECF sigma factor Sigma70_r4 PF04545.16 EME70072.1 - 0.033 13.7 0.1 0.099 12.2 0.1 1.8 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_28 PF13518.6 EME70072.1 - 0.055 13.6 0.6 0.23 11.6 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain PTE PF02126.18 EME70072.1 - 0.07 12.5 0.1 0.17 11.3 0.0 1.6 2 0 0 2 2 2 0 Phosphotriesterase family HTH_29 PF13551.6 EME70072.1 - 0.085 12.9 1.2 0.18 11.9 0.2 2.1 2 0 0 2 2 2 0 Winged helix-turn helix FleQ PF06490.11 EME70072.1 - 0.14 12.5 0.0 0.27 11.6 0.0 1.5 1 0 0 1 1 1 0 Flagellar regulatory protein FleQ DUF192 PF02643.15 EME70073.1 - 1.9e-30 104.8 0.0 2.3e-30 104.6 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 DUF4138 PF13595.6 EME70073.1 - 0.13 11.5 0.0 0.15 11.3 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4138) Peptidase_C14 PF00656.22 EME70074.1 - 1.3e-17 64.6 0.0 2.5e-17 63.7 0.0 1.4 1 0 0 1 1 1 1 Caspase domain ANAPC4_WD40 PF12894.7 EME70074.1 - 3.4e-11 43.3 0.0 6.2e-05 23.2 0.0 5.3 3 1 2 5 5 5 3 Anaphase-promoting complex subunit 4 WD40 domain WD40 PF00400.32 EME70074.1 - 1.7e-09 38.1 0.0 0.0022 18.8 0.0 5.3 5 0 0 5 5 4 1 WD domain, G-beta repeat Peptidase_C13 PF01650.18 EME70074.1 - 0.0019 17.8 0.0 0.0031 17.1 0.0 1.2 1 0 0 1 1 1 1 Peptidase C13 family PD40 PF07676.12 EME70074.1 - 0.0023 17.8 0.0 0.22 11.5 0.0 3.1 2 0 0 2 2 2 1 WD40-like Beta Propeller Repeat PQQ_2 PF13360.6 EME70074.1 - 0.003 17.2 11.7 0.023 14.3 1.1 3.3 2 1 1 3 3 3 2 PQQ-like domain Hira PF07569.11 EME70074.1 - 0.012 15.3 0.0 0.031 14.0 0.0 1.7 1 0 0 1 1 1 0 TUP1-like enhancer of split Cytochrom_D1 PF02239.16 EME70074.1 - 0.028 12.9 1.4 0.14 10.6 0.0 2.7 3 1 1 4 4 4 0 Cytochrome D1 heme domain Lactonase PF10282.9 EME70074.1 - 0.044 13.0 0.0 0.16 11.2 0.0 1.9 2 0 0 2 2 2 0 Lactonase, 7-bladed beta-propeller GspH PF12019.8 EME70074.1 - 0.053 13.9 0.3 5.2 7.5 0.0 3.2 2 1 0 2 2 2 0 Type II transport protein GspH Nbas_N PF15492.6 EME70074.1 - 0.095 12.0 0.0 9 5.5 0.0 3.4 3 1 1 4 4 4 0 Neuroblastoma-amplified sequence, N terminal DUF3438 PF11920.8 EME70074.1 - 0.13 11.5 0.1 0.37 10.0 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3438) Ge1_WD40 PF16529.5 EME70074.1 - 0.15 11.0 0.2 0.79 8.6 0.1 2.2 2 1 0 2 2 2 0 WD40 region of Ge1, enhancer of mRNA-decapping protein Autotransporter PF03797.19 EME70075.1 - 1.2e-09 38.2 10.0 2.4e-09 37.2 10.0 1.5 1 1 0 1 1 1 1 Autotransporter beta-domain PhaC_N PF07167.13 EME70076.1 - 2.2e-57 193.5 0.0 3.3e-57 192.9 0.0 1.3 1 0 0 1 1 1 1 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus PHBC_N PF12551.8 EME70076.1 - 2.3e-20 72.0 0.1 7.2e-20 70.5 0.1 1.9 1 0 0 1 1 1 1 Poly-beta-hydroxybutyrate polymerase N terminal Abhydrolase_1 PF00561.20 EME70076.1 - 1.1e-09 38.4 0.0 3.2e-09 36.8 0.0 1.7 1 1 0 1 1 1 1 alpha/beta hydrolase fold DUF3141 PF11339.8 EME70076.1 - 0.081 11.3 0.0 0.13 10.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3141) EAL PF00563.20 EME70078.1 - 0.11 12.0 0.0 0.22 11.0 0.0 1.5 1 0 0 1 1 1 0 EAL domain Proteasome PF00227.26 EME70079.1 - 1.6e-07 31.0 0.1 3.6e-07 29.9 0.1 1.5 1 1 0 1 1 1 1 Proteasome subunit Peptidase_M23 PF01551.22 EME70080.1 - 8e-33 112.5 2.6 2.2e-32 111.1 2.6 1.8 1 0 0 1 1 1 1 Peptidase family M23 HHH_9 PF17674.1 EME70081.1 - 1.6e-24 86.6 0.0 3.3e-24 85.6 0.0 1.6 2 0 0 2 2 2 1 HHH domain S1 PF00575.23 EME70081.1 - 1.8e-24 85.8 1.0 2.6e-24 85.3 1.0 1.2 1 0 0 1 1 1 1 S1 RNA binding domain PCB_OB PF17092.5 EME70081.1 - 0.07 13.9 0.1 0.21 12.3 0.1 1.8 1 1 0 1 1 1 0 Penicillin-binding protein OB-like domain MSA-2c PF12238.8 EME70081.1 - 0.83 9.6 5.8 1.1 9.2 5.8 1.3 1 0 0 1 1 1 0 Merozoite surface antigen 2c MarR_2 PF12802.7 EME70082.1 - 3.9e-13 49.1 1.5 9.8e-13 47.8 0.2 2.3 2 1 1 3 3 3 1 MarR family MarR PF01047.22 EME70082.1 - 1.4e-12 47.4 0.0 4.3e-12 45.8 0.0 1.8 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 EME70082.1 - 8.2e-06 26.2 0.0 2.4e-05 24.7 0.0 1.8 1 1 1 2 2 2 1 Winged helix DNA-binding domain Sigma70_r4 PF04545.16 EME70082.1 - 4.9e-05 22.8 0.2 0.058 12.9 0.0 2.5 2 0 0 2 2 2 2 Sigma-70, region 4 HTH_24 PF13412.6 EME70082.1 - 0.0014 18.2 0.1 0.0076 15.8 0.0 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 EME70082.1 - 0.0016 18.2 0.3 0.0068 16.2 0.3 2.1 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.6 EME70082.1 - 0.012 15.6 0.0 0.023 14.7 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_20 PF12840.7 EME70082.1 - 0.034 14.2 1.5 0.18 11.9 0.1 2.7 3 0 0 3 3 3 0 Helix-turn-helix domain Crp PF00325.20 EME70082.1 - 0.035 13.8 0.1 0.081 12.6 0.1 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, crp family Sigma70_r4_2 PF08281.12 EME70082.1 - 0.053 13.2 0.7 1 9.1 0.1 2.5 3 0 0 3 3 3 0 Sigma-70, region 4 HTH_34 PF13601.6 EME70082.1 - 0.074 13.2 0.0 0.34 11.1 0.0 1.9 1 1 1 2 2 2 0 Winged helix DNA-binding domain DUF1398 PF07166.11 EME70083.1 - 6.4e-06 26.2 0.0 8.3e-05 22.6 0.0 1.8 1 1 1 2 2 2 2 Protein of unknown function (DUF1398) TetR_C_28 PF17937.1 EME70084.1 - 7.2e-17 61.6 0.2 1.4e-16 60.7 0.1 1.5 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_N PF00440.23 EME70084.1 - 6.7e-10 38.6 0.0 1.1e-09 38.0 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_31 PF17940.1 EME70084.1 - 0.00034 20.8 0.2 0.0036 17.5 0.1 2.3 2 1 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain HAD_2 PF13419.6 EME70084.1 - 0.066 13.3 0.0 0.1 12.7 0.0 1.3 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase TetR_C_6 PF13977.6 EME70084.1 - 0.1 12.8 0.1 1.9 8.7 0.1 2.5 1 1 0 1 1 1 0 BetI-type transcriptional repressor, C-terminal HlyD_D23 PF16576.5 EME70085.1 - 5.4e-31 107.5 0.3 8.3e-31 106.9 0.3 1.3 1 0 0 1 1 1 1 Barrel-sandwich domain of CusB or HlyD membrane-fusion HlyD_3 PF13437.6 EME70085.1 - 2.4e-17 63.6 0.4 3.1e-16 60.0 0.0 2.8 3 1 0 3 3 3 1 HlyD family secretion protein Biotin_lipoyl_2 PF13533.6 EME70085.1 - 2.1e-07 30.6 8.0 2.6e-05 24.0 0.4 3.3 3 0 0 3 3 3 2 Biotin-lipoyl like HlyD PF00529.20 EME70085.1 - 0.00081 19.2 7.3 0.031 14.2 0.3 2.3 2 0 0 2 2 2 2 HlyD membrane-fusion protein of T1SS Biotin_lipoyl PF00364.22 EME70085.1 - 0.0019 18.0 0.4 0.48 10.3 0.1 2.9 2 0 0 2 2 2 1 Biotin-requiring enzyme MFS_MOT1 PF16983.5 EME70085.1 - 0.24 11.8 2.7 0.42 11.0 1.2 2.2 2 0 0 2 2 2 0 Molybdate transporter of MFS superfamily Fil_haemagg PF05594.14 EME70085.1 - 1.9 9.1 4.7 0.53 10.9 0.7 2.2 3 0 0 3 3 3 0 Haemagluttinin repeat ACR_tran PF00873.19 EME70086.1 - 2.5e-260 866.4 24.6 2.8e-260 866.2 24.6 1.0 1 0 0 1 1 1 1 AcrB/AcrD/AcrF family MMPL PF03176.15 EME70086.1 - 3e-14 52.7 39.2 1.8e-10 40.3 10.8 2.8 3 0 0 3 3 3 2 MMPL family SecD_SecF PF02355.16 EME70086.1 - 0.069 12.5 32.7 0.044 13.2 10.2 2.5 2 0 0 2 2 2 0 Protein export membrane protein Metallophos PF00149.28 EME70087.1 - 2.1e-05 25.1 1.5 0.11 12.9 0.6 2.2 2 0 0 2 2 2 2 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 EME70087.1 - 0.00053 20.2 0.2 0.034 14.3 0.0 2.2 2 0 0 2 2 2 2 Calcineurin-like phosphoesterase superfamily domain PseudoU_synth_2 PF00849.22 EME70088.1 - 1.6e-30 106.3 0.0 1.9e-30 106.0 0.0 1.1 1 0 0 1 1 1 1 RNA pseudouridylate synthase Usp PF00582.26 EME70089.1 - 2.5e-10 41.0 2.4 2.7e-06 28.0 0.3 2.3 2 1 0 2 2 2 2 Universal stress protein family OmpA PF00691.20 EME70090.1 - 3.7e-17 62.5 0.6 7.8e-17 61.4 0.6 1.5 1 0 0 1 1 1 1 OmpA family DIM PF08194.12 EME70090.1 - 0.086 13.1 1.0 0.17 12.1 1.0 1.5 1 0 0 1 1 1 0 DIM protein AsmA PF05170.14 EME70091.1 - 1.1e-61 209.5 0.3 2.3e-32 112.6 0.0 2.1 1 1 1 2 2 2 2 AsmA family AsmA_2 PF13502.6 EME70091.1 - 2.7e-26 92.5 9.5 2.8e-25 89.2 6.1 3.1 2 1 0 2 2 2 1 AsmA-like C-terminal region AsmA_1 PF13109.6 EME70091.1 - 0.071 12.6 0.1 2.1 7.8 0.0 2.4 2 0 0 2 2 2 0 AsmA-like C-terminal region DUF190 PF02641.15 EME70092.1 - 8.2e-38 128.6 0.0 9.2e-38 128.5 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized ACR, COG1993 ALS_ss_C PF10369.9 EME70092.1 - 0.017 15.3 0.0 0.029 14.6 0.0 1.3 1 0 0 1 1 1 0 Small subunit of acetolactate synthase CRCB PF02537.15 EME70093.1 - 6.6e-24 84.0 11.8 7.7e-24 83.8 11.8 1.0 1 0 0 1 1 1 1 CrcB-like protein, Camphor Resistance (CrcB) GGDEF PF00990.21 EME70094.1 - 1.1e-48 165.1 0.0 1.5e-48 164.6 0.0 1.2 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain PAS_9 PF13426.7 EME70094.1 - 1e-28 99.7 0.0 7.3e-15 55.1 0.0 2.4 2 0 0 2 2 2 2 PAS domain PAS PF00989.25 EME70094.1 - 6.6e-21 74.4 0.1 2.9e-09 36.9 0.0 2.3 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.10 EME70094.1 - 6.7e-16 58.5 0.0 3.2e-09 37.0 0.0 2.8 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.7 EME70094.1 - 7.1e-14 51.5 0.3 2.1e-05 24.4 0.0 3.9 4 0 0 4 4 4 2 PAS domain PAS_3 PF08447.12 EME70094.1 - 2.8e-09 37.1 0.3 0.0001 22.5 0.1 2.5 2 0 0 2 2 2 2 PAS fold DAGK_cat PF00781.24 EME70094.1 - 0.05 13.2 0.0 0.13 11.9 0.0 1.6 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain BPD_transp_1 PF00528.22 EME70095.1 - 3.1e-22 79.2 9.4 3.7e-22 78.9 9.4 1.1 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 EME70096.1 - 3.7e-29 102.0 0.0 7.7e-29 101.0 0.0 1.5 2 0 0 2 2 2 1 ABC transporter TOBE PF03459.17 EME70096.1 - 2e-11 44.0 1.5 4.9e-10 39.6 0.5 2.7 2 0 0 2 2 2 1 TOBE domain AAA_21 PF13304.6 EME70096.1 - 2.8e-08 34.0 0.2 0.00074 19.4 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 EME70096.1 - 0.0005 19.6 0.1 0.48 9.8 0.1 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 EME70096.1 - 0.0018 18.7 0.2 0.0033 17.8 0.2 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 EME70096.1 - 0.007 16.9 0.0 0.011 16.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 EME70096.1 - 0.018 15.3 0.1 0.13 12.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 EME70096.1 - 0.021 14.6 0.5 0.095 12.5 0.1 2.1 2 0 0 2 2 2 0 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 EME70096.1 - 0.036 14.0 0.0 0.092 12.6 0.0 1.6 2 0 0 2 2 2 0 RsgA GTPase AAA PF00004.29 EME70096.1 - 0.042 14.3 0.0 0.17 12.3 0.0 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.6 EME70096.1 - 0.048 13.9 0.1 1.8 8.8 0.1 2.6 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Zeta_toxin PF06414.12 EME70096.1 - 0.11 11.7 0.1 0.18 11.0 0.1 1.2 1 0 0 1 1 1 0 Zeta toxin DD_K PF12121.8 EME70097.1 - 0.12 12.5 1.3 0.19 11.9 1.3 1.3 1 0 0 1 1 1 0 Dermaseptin NiFeSe_Hases PF00374.19 EME70101.1 - 2.9e-33 115.6 0.0 1.3e-16 60.6 0.0 2.7 3 0 0 3 3 3 2 Nickel-dependent hydrogenase Oxidored_q6 PF01058.22 EME70102.1 - 2.3e-30 105.1 0.1 2.7e-30 104.9 0.1 1.1 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit NADH-G_4Fe-4S_3 PF10588.9 EME70103.1 - 5.3e-14 51.5 0.3 5.3e-14 51.5 0.3 2.1 3 0 0 3 3 3 1 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Fer2_4 PF13510.6 EME70103.1 - 3.3e-13 49.5 0.0 9.7e-13 48.0 0.0 1.8 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_15 PF13459.6 EME70103.1 - 2e-12 47.6 1.0 3.4e-11 43.7 0.1 2.5 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer2 PF00111.27 EME70103.1 - 1e-10 41.4 0.4 3.4e-10 39.7 0.0 2.0 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4 PF00037.27 EME70103.1 - 0.031 14.1 8.4 0.049 13.5 0.3 3.0 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_13 PF13370.6 EME70103.1 - 1.1 9.8 6.2 0.19 12.3 0.9 2.4 2 1 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Complex1_51K PF01512.17 EME70104.1 - 1.7e-43 148.1 0.0 3e-43 147.3 0.0 1.3 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit 2Fe-2S_thioredx PF01257.19 EME70104.1 - 4.7e-33 114.1 0.0 7.2e-33 113.5 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like [2Fe-2S] ferredoxin NADH_4Fe-4S PF10589.9 EME70104.1 - 1.1e-25 89.6 0.1 2.8e-25 88.2 0.1 1.8 1 0 0 1 1 1 1 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region SLBB PF10531.9 EME70104.1 - 0.00092 19.0 0.0 0.0024 17.7 0.0 1.7 1 0 0 1 1 1 1 SLBB domain DUF3967 PF13152.6 EME70104.1 - 0.076 12.8 1.3 0.17 11.7 1.3 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3967) Acetyltransf_1 PF00583.25 EME70105.1 - 6.2e-07 29.7 0.0 6.5e-07 29.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 EME70105.1 - 0.0026 18.2 0.0 0.003 18.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 EME70105.1 - 0.0033 17.4 0.0 0.0039 17.1 0.0 1.1 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_10 PF13673.7 EME70105.1 - 0.0094 15.9 0.0 0.01 15.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain PanZ PF12568.8 EME70105.1 - 0.055 13.2 0.0 0.067 12.9 0.0 1.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain, PanZ Rrf2 PF02082.20 EME70106.1 - 3.5e-21 75.4 0.1 5.4e-21 74.7 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_20 PF12840.7 EME70106.1 - 1.3e-05 25.1 0.3 2.4e-05 24.3 0.1 1.5 2 0 0 2 2 2 1 Helix-turn-helix domain GntR PF00392.21 EME70106.1 - 2.3e-05 23.9 0.3 4e-05 23.2 0.3 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family TrmB PF01978.19 EME70106.1 - 2.4e-05 24.1 0.0 3.1e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 EME70106.1 - 0.00013 21.9 0.3 0.00023 21.0 0.1 1.6 2 0 0 2 2 1 1 HTH domain HrcA_DNA-bdg PF03444.15 EME70106.1 - 0.00015 21.3 0.0 0.00023 20.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_27 PF13463.6 EME70106.1 - 0.00018 21.9 0.0 0.00055 20.4 0.0 1.8 1 1 0 1 1 1 1 Winged helix DNA-binding domain HTH_28 PF13518.6 EME70106.1 - 0.004 17.2 0.1 0.017 15.3 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_10 PF04967.12 EME70106.1 - 0.0051 16.6 0.0 0.0096 15.7 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_47 PF16221.5 EME70106.1 - 0.0067 16.0 0.1 0.016 14.8 0.1 1.7 1 0 0 1 1 1 1 winged helix-turn-helix HTH_IclR PF09339.10 EME70106.1 - 0.0071 16.1 0.4 0.015 15.1 0.1 1.7 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.6 EME70106.1 - 0.011 15.2 0.1 0.03 13.9 0.1 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 EME70106.1 - 0.02 14.8 0.0 0.067 13.2 0.0 1.8 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain MarR_2 PF12802.7 EME70106.1 - 0.037 13.9 0.2 0.093 12.6 0.1 1.6 2 0 0 2 2 2 0 MarR family Ad_Cy_reg PF16701.5 EME70106.1 - 0.07 12.9 0.0 0.1 12.3 0.0 1.3 1 0 0 1 1 1 0 Adenylate cyclase regulatory domain HxlR PF01638.17 EME70106.1 - 0.072 13.0 0.0 0.23 11.4 0.0 1.8 2 0 0 2 2 2 0 HxlR-like helix-turn-helix HTH_23 PF13384.6 EME70106.1 - 0.11 12.3 0.0 0.24 11.2 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain HTH_psq PF05225.16 EME70106.1 - 0.14 11.9 0.0 0.32 10.8 0.0 1.6 1 0 0 1 1 1 0 helix-turn-helix, Psq domain NIT PF08376.10 EME70107.1 - 3.8e-49 168.2 8.1 3.8e-49 168.2 8.1 3.4 2 1 1 3 3 3 1 Nitrate and nitrite sensing MCPsignal PF00015.21 EME70107.1 - 8e-34 116.9 49.0 7.6e-33 113.7 24.0 3.6 3 1 0 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF1664 PF07889.12 EME70107.1 - 1.1e-05 25.5 7.9 0.25 11.4 0.2 4.8 3 2 0 3 3 3 2 Protein of unknown function (DUF1664) HAMP PF00672.25 EME70107.1 - 1.3e-05 25.5 5.8 1.5e-05 25.3 0.1 3.9 4 0 0 4 4 4 1 HAMP domain Laminin_II PF06009.12 EME70107.1 - 0.0052 16.8 14.3 0.039 14.0 1.9 3.9 1 1 3 4 4 4 2 Laminin Domain II CorA PF01544.18 EME70107.1 - 0.33 10.2 2.1 3.1 7.0 0.4 2.7 1 1 2 3 3 3 0 CorA-like Mg2+ transporter protein DUF3450 PF11932.8 EME70107.1 - 0.58 9.4 11.0 0.87 8.8 3.2 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) Laminin_I PF06008.14 EME70107.1 - 1.4 8.6 20.4 0.11 12.2 4.1 3.0 3 1 0 3 3 3 0 Laminin Domain I Goodbye PF17109.5 EME70107.1 - 3.8 8.0 7.0 12 6.3 0.4 3.0 2 0 0 2 2 2 0 fungal STAND N-terminal Goodbye domain AAA_13 PF13166.6 EME70107.1 - 5.7 5.5 7.4 11 4.6 6.6 1.6 1 1 1 2 2 2 0 AAA domain Pentapeptide PF00805.22 EME70108.1 - 3.7e-25 87.2 17.9 3.1e-07 29.9 2.0 4.2 3 1 1 4 4 4 4 Pentapeptide repeats (8 copies) Pentapeptide_3 PF13576.6 EME70108.1 - 5.1e-14 52.2 0.5 0.0016 18.6 0.0 4.2 1 1 3 4 4 4 4 Pentapeptide repeats (9 copies) Pentapeptide_4 PF13599.6 EME70108.1 - 1.5e-09 37.9 0.0 3.6e-06 27.0 0.0 3.0 1 1 2 3 3 3 3 Pentapeptide repeats (9 copies) Response_reg PF00072.24 EME70108.1 - 2.4e-06 27.7 0.0 3.9e-06 27.0 0.0 1.4 1 0 0 1 1 1 1 Response regulator receiver domain ABC_tran PF00005.27 EME70110.1 - 1.5e-33 116.2 0.0 3.1e-33 115.2 0.0 1.5 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.23 EME70110.1 - 4.9e-33 114.9 3.8 6.1e-33 114.6 3.8 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region SMC_N PF02463.19 EME70110.1 - 6.9e-08 32.2 0.1 6.8e-06 25.7 0.0 2.3 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 EME70110.1 - 0.00033 20.9 0.1 0.015 15.5 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 EME70110.1 - 0.00048 20.6 0.2 0.0015 19.0 0.2 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.6 EME70110.1 - 0.002 18.3 0.0 0.068 13.3 0.0 2.5 2 0 0 2 2 2 1 AAA domain ABC_ATPase PF09818.9 EME70110.1 - 0.0091 14.8 0.2 0.14 11.0 0.0 2.1 2 0 0 2 2 2 1 Predicted ATPase of the ABC class AAA_24 PF13479.6 EME70110.1 - 0.0094 15.7 0.0 0.021 14.5 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_21 PF13304.6 EME70110.1 - 0.012 15.4 0.8 0.11 12.2 0.1 2.1 1 1 0 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system AAA PF00004.29 EME70110.1 - 0.013 15.9 0.2 0.44 11.0 0.2 2.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.12 EME70110.1 - 0.018 14.4 0.3 0.055 12.7 0.0 1.9 2 0 0 2 2 2 0 Zeta toxin RsgA_GTPase PF03193.16 EME70110.1 - 0.018 14.9 0.0 0.06 13.3 0.0 1.8 1 0 0 1 1 1 0 RsgA GTPase AAA_29 PF13555.6 EME70110.1 - 0.021 14.5 0.2 0.021 14.5 0.2 2.2 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_10 PF12846.7 EME70110.1 - 0.027 13.4 0.0 0.09 11.7 0.0 1.7 2 0 0 2 2 2 0 AAA-like domain APS_kinase PF01583.20 EME70110.1 - 0.065 13.1 0.0 0.19 11.6 0.0 1.8 1 0 0 1 1 1 0 Adenylylsulphate kinase MMR_HSR1 PF01926.23 EME70110.1 - 0.071 13.2 0.0 0.21 11.7 0.0 1.8 2 0 0 2 2 2 0 50S ribosome-binding GTPase Cytidylate_kin PF02224.18 EME70110.1 - 0.085 12.6 0.0 0.15 11.8 0.0 1.4 1 0 0 1 1 1 0 Cytidylate kinase SbcCD_C PF13558.6 EME70110.1 - 0.1 12.9 0.4 2.7 8.3 0.4 2.6 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.6 EME70110.1 - 0.12 12.0 0.2 0.43 10.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 EME70110.1 - 0.21 11.3 0.9 3.6 7.3 0.0 2.8 3 0 0 3 3 3 0 IstB-like ATP binding protein Phasin_2 PF09361.10 EME70111.1 - 2.1e-08 34.3 1.2 2.8e-08 33.9 1.2 1.2 1 0 0 1 1 1 1 Phasin protein DUF3417 PF11897.8 EME70111.1 - 0.015 15.8 0.1 0.02 15.3 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3417) Tsp45I PF06300.12 EME70111.1 - 0.15 11.6 0.0 0.17 11.4 0.0 1.0 1 0 0 1 1 1 0 Tsp45I type II restriction enzyme tRNA-synt_2 PF00152.20 EME70112.1 - 9e-46 156.4 0.0 1.2e-45 156.0 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA-synt_2d PF01409.20 EME70112.1 - 0.03 13.8 0.0 0.57 9.6 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetases class II core domain (F) Radical_SAM PF04055.21 EME70113.1 - 1.8e-08 34.9 0.0 2.9e-08 34.3 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 EME70113.1 - 6.3e-05 23.1 0.0 9.3e-05 22.5 0.0 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 EME70113.1 - 7.1e-05 23.1 0.0 0.0001 22.6 0.0 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain LAM_C PF12544.8 EME70114.1 - 7.8e-07 29.3 0.2 7.8e-07 29.3 0.2 1.6 2 0 0 2 2 2 1 Lysine-2,3-aminomutase Inositol_P PF00459.25 EME70115.1 - 2.5e-67 227.2 0.0 2.9e-67 227.0 0.0 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family OmpA PF00691.20 EME70116.1 - 3.2e-10 40.3 0.0 5.1e-10 39.6 0.0 1.3 1 0 0 1 1 1 1 OmpA family Pilus_CpaD PF09476.10 EME70116.1 - 0.00014 21.7 0.2 0.00026 20.8 0.2 1.3 1 0 0 1 1 1 1 Pilus biogenesis CpaD protein (pilus_cpaD) MotA_ExbB PF01618.16 EME70117.1 - 0.00031 20.5 4.4 0.0028 17.4 3.9 2.8 1 1 1 2 2 2 1 MotA/TolQ/ExbB proton channel family DUF4407 PF14362.6 EME70117.1 - 0.037 13.4 5.4 0.069 12.5 1.5 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF4407) Ribosomal_S15 PF00312.22 EME70117.1 - 0.21 11.8 0.7 0.36 11.1 0.1 1.7 2 0 0 2 2 2 0 Ribosomal protein S15 DUF2752 PF10825.8 EME70117.1 - 0.71 10.0 2.9 2.1 8.5 2.9 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF2752) SlyX PF04102.12 EME70117.1 - 2.2 9.0 4.2 36 5.1 1.0 2.7 2 0 0 2 2 2 0 SlyX OmpA PF00691.20 EME70118.1 - 1.8e-17 63.5 1.0 6e-17 61.8 0.0 2.2 3 0 0 3 3 3 1 OmpA family Spc7 PF08317.11 EME70118.1 - 0.13 11.1 10.1 0.19 10.6 10.1 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein Golgin_A5 PF09787.9 EME70118.1 - 0.2 11.1 6.2 0.36 10.2 6.2 1.4 1 0 0 1 1 1 0 Golgin subfamily A member 5 HIP1_clath_bdg PF16515.5 EME70118.1 - 0.33 11.6 12.1 0.33 11.6 4.4 2.6 1 1 0 2 2 2 0 Clathrin-binding domain of Huntingtin-interacting protein 1 Fez1 PF06818.15 EME70118.1 - 0.41 11.1 6.3 0.78 10.2 6.3 1.5 1 0 0 1 1 1 0 Fez1 SlyX PF04102.12 EME70118.1 - 0.5 11.0 12.1 1.5 9.5 0.5 3.6 2 1 0 3 3 3 0 SlyX TMF_TATA_bd PF12325.8 EME70118.1 - 0.73 10.1 12.0 3.9 7.7 2.6 2.7 2 1 1 3 3 3 0 TATA element modulatory factor 1 TATA binding Apt1 PF10351.9 EME70118.1 - 1.3 7.8 3.6 1.8 7.4 3.6 1.1 1 0 0 1 1 1 0 Golgi-body localisation protein domain DUF4164 PF13747.6 EME70118.1 - 2.7 8.3 19.4 2.1 8.7 7.8 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4164) HAUS6_N PF14661.6 EME70118.1 - 3.2 7.3 6.8 8.8 5.8 6.8 1.7 1 1 0 1 1 1 0 HAUS augmin-like complex subunit 6 N-terminus OmpH PF03938.14 EME70118.1 - 3.3 8.0 13.8 0.99 9.7 6.0 2.3 1 1 1 2 2 2 0 Outer membrane protein (OmpH-like) DUF3618 PF12277.8 EME70118.1 - 4.8 7.5 13.3 12 6.2 1.4 3.8 3 0 0 3 3 3 0 Protein of unknown function (DUF3618) MerR-DNA-bind PF09278.11 EME70118.1 - 6.3 7.4 15.2 0.094 13.3 5.5 2.8 3 0 0 3 3 2 0 MerR, DNA binding GAS PF13851.6 EME70118.1 - 6.5 6.0 11.8 10 5.4 2.3 2.1 1 1 1 2 2 2 0 Growth-arrest specific micro-tubule binding DUF724 PF05266.14 EME70118.1 - 8.5 6.1 10.1 2.5 7.9 5.2 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF724) Multi_Drug_Res PF00893.19 EME70119.1 - 3.5e-26 91.7 4.1 4.3e-26 91.4 4.1 1.1 1 0 0 1 1 1 1 Small Multidrug Resistance protein Fer4_20 PF14691.6 EME70120.1 - 0.11 12.2 1.2 0.36 10.6 1.2 1.8 1 1 0 1 1 1 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NicO PF03824.16 EME70121.1 - 2e-30 106.1 25.2 2.7e-16 59.8 10.5 2.1 1 1 1 2 2 2 2 High-affinity nickel-transport protein DUF1007 PF06226.13 EME70122.1 - 6.6e-40 137.3 0.0 7.9e-40 137.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1007) EF-hand_5 PF13202.6 EME70122.1 - 0.023 14.2 0.2 0.023 14.2 0.2 2.0 2 0 0 2 2 2 0 EF hand EF-hand_1 PF00036.32 EME70122.1 - 0.031 13.8 0.2 0.096 12.3 0.2 1.8 1 0 0 1 1 1 0 EF hand EF-hand_6 PF13405.6 EME70122.1 - 0.037 14.0 0.1 0.12 12.4 0.1 1.9 1 0 0 1 1 1 0 EF-hand domain Cys_Met_Meta_PP PF01053.20 EME70123.1 - 2.1e-97 326.1 0.0 2.5e-97 325.8 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.21 EME70123.1 - 3.2e-05 23.3 0.0 4.6e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 EME70123.1 - 7.7e-05 21.8 0.0 0.00012 21.2 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 EME70123.1 - 0.00019 20.8 0.1 0.00043 19.7 0.1 1.6 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family SMBP PF16785.5 EME70124.1 - 0.94 9.7 16.4 6.2 7.1 16.4 2.0 1 1 0 1 1 1 0 Small metal-binding protein GGDEF PF00990.21 EME70125.1 - 1.5e-48 164.6 0.0 2.8e-48 163.7 0.0 1.5 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain sCache_2 PF17200.4 EME70125.1 - 1.1e-33 116.3 0.0 1.7e-33 115.7 0.0 1.3 1 0 0 1 1 1 1 Single Cache domain 2 dCache_2 PF08269.11 EME70125.1 - 5.3e-29 101.3 0.0 7.8e-29 100.8 0.0 1.2 1 0 0 1 1 1 1 Cache domain PAS_9 PF13426.7 EME70125.1 - 4.9e-14 52.4 0.0 2.2e-13 50.3 0.0 2.1 2 0 0 2 2 2 1 PAS domain PAS PF00989.25 EME70125.1 - 1.6e-11 44.2 0.0 4.3e-10 39.6 0.0 2.4 2 0 0 2 2 2 1 PAS fold Cache_3-Cache_2 PF17201.4 EME70125.1 - 4.2e-10 39.4 0.0 6.8e-10 38.7 0.0 1.2 1 0 0 1 1 1 1 Cache 3/Cache 2 fusion domain PAS_4 PF08448.10 EME70125.1 - 1.7e-08 34.7 0.0 1.2e-07 32.0 0.0 2.5 2 0 0 2 2 2 1 PAS fold PAS_3 PF08447.12 EME70125.1 - 1.8e-08 34.6 0.1 2.2e-07 31.0 0.0 2.5 1 1 1 2 2 2 1 PAS fold HAMP PF00672.25 EME70125.1 - 2.2e-08 34.3 0.7 7.5e-08 32.6 0.2 2.3 2 0 0 2 2 2 1 HAMP domain PAS_8 PF13188.7 EME70125.1 - 4e-08 33.1 0.9 1.1e-05 25.3 0.0 3.6 3 0 0 3 3 3 1 PAS domain PAS_7 PF12860.7 EME70125.1 - 0.0059 16.8 0.1 0.21 11.8 0.0 3.0 2 1 0 2 2 2 1 PAS fold CbiX PF01903.17 EME70126.1 - 4.3e-28 97.8 0.0 6.1e-13 49.0 0.0 2.0 2 0 0 2 2 2 2 CbiX TP_methylase PF00590.20 EME70127.1 - 9.9e-50 169.4 1.8 1.2e-49 169.2 1.8 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Radical_SAM PF04055.21 EME70127.1 - 0.0025 18.2 0.0 0.0062 16.9 0.0 1.6 1 1 0 1 1 1 1 Radical SAM superfamily Ion_trans PF00520.31 EME70128.1 - 4.1e-29 101.5 6.5 4.8e-29 101.3 6.5 1.0 1 0 0 1 1 1 1 Ion transport protein Ion_trans_2 PF07885.16 EME70128.1 - 4.2e-14 52.3 3.2 4.2e-14 52.3 3.2 1.8 2 0 0 2 2 2 1 Ion channel Herpes_UL73 PF03554.13 EME70128.1 - 3.1 7.9 4.6 2 8.5 1.1 2.1 2 0 0 2 2 2 0 UL73 viral envelope glycoprotein PCRF PF03462.18 EME70129.1 - 0.061 13.2 0.0 0.16 11.8 0.0 1.6 1 0 0 1 1 1 0 PCRF domain CAP_N PF01213.19 EME70130.1 - 0.21 11.1 0.2 0.19 11.2 0.2 1.0 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal CMD PF02627.20 EME70131.1 - 3.3e-20 71.9 0.5 4.4e-20 71.5 0.5 1.2 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family DUF533 PF04391.12 EME70131.1 - 1.1 8.8 4.5 1.1 8.8 0.8 2.2 1 1 0 2 2 2 0 Protein of unknown function (DUF533) Sulf_transp PF04143.14 EME70132.1 - 6.5e-08 32.5 18.8 1.2e-07 31.6 18.8 1.4 1 1 0 1 1 1 1 Sulphur transport Sulf_transp PF04143.14 EME70133.1 - 0.0081 15.8 4.7 0.0081 15.8 4.7 2.2 2 0 0 2 2 2 2 Sulphur transport HTH_24 PF13412.6 EME70134.1 - 0.029 13.9 0.0 0.043 13.4 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 EME70134.1 - 0.036 14.0 0.0 0.049 13.6 0.0 1.2 1 0 0 1 1 1 0 HTH domain Sigma70_r4_2 PF08281.12 EME70134.1 - 0.037 13.7 0.0 0.046 13.4 0.0 1.2 1 0 0 1 1 1 0 Sigma-70, region 4 Wzy_C PF04932.15 EME70135.1 - 0.00025 20.7 2.2 0.00025 20.7 2.2 4.7 2 2 2 4 4 4 2 O-Antigen ligase Abhydrolase_5 PF12695.7 EME70136.1 - 0.073 12.8 0.0 0.19 11.5 0.0 1.7 2 0 0 2 2 2 0 Alpha/beta hydrolase family Peptidase_S9 PF00326.21 EME70136.1 - 0.12 11.9 0.1 0.19 11.2 0.1 1.3 1 0 0 1 1 1 0 Prolyl oligopeptidase family Hydrolase_4 PF12146.8 EME70136.1 - 0.16 11.2 0.3 1.2 8.3 0.1 2.0 2 0 0 2 2 2 0 Serine aminopeptidase, S33 Autotransporter PF03797.19 EME70137.1 - 5.3e-19 68.9 18.6 5.3e-19 68.9 18.6 1.9 2 0 0 2 2 2 1 Autotransporter beta-domain OMP_b-brl PF13505.6 EME70137.1 - 0.00045 20.4 12.6 0.00045 20.4 12.6 2.6 2 1 1 3 3 3 2 Outer membrane protein beta-barrel domain Transglut_core PF01841.19 EME70138.1 - 0.0041 17.5 0.0 0.0057 17.1 0.0 1.3 1 0 0 1 1 1 1 Transglutaminase-like superfamily Transglut_core3 PF13471.6 EME70138.1 - 0.1 12.5 1.7 0.18 11.7 1.7 1.5 1 1 0 1 1 1 0 Transglutaminase-like superfamily DNA_gyraseB PF00204.25 EME70140.1 - 3.9e-45 153.5 0.0 5.8e-45 152.9 0.0 1.3 1 0 0 1 1 1 1 DNA gyrase B DNA_gyraseB_C PF00986.21 EME70140.1 - 9.7e-24 83.3 0.2 2.1e-23 82.2 0.2 1.6 1 0 0 1 1 1 1 DNA gyrase B subunit, carboxyl terminus HATPase_c PF02518.26 EME70140.1 - 7e-20 71.6 0.0 1.5e-19 70.5 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Toprim PF01751.22 EME70140.1 - 3.1e-17 62.7 0.0 6.9e-17 61.6 0.0 1.6 1 0 0 1 1 1 1 Toprim domain HATPase_c_2 PF13581.6 EME70140.1 - 0.026 14.5 0.1 0.05 13.6 0.1 1.4 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 EME70140.1 - 0.048 13.5 0.0 0.098 12.5 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 4HBT PF03061.22 EME70141.1 - 2e-18 66.5 2.0 2.8e-18 66.1 1.0 1.7 1 1 0 2 2 2 1 Thioesterase superfamily 4HBT_3 PF13622.6 EME70141.1 - 0.00016 22.0 0.2 0.00018 21.8 0.2 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily 4HBT_2 PF13279.6 EME70141.1 - 0.0022 18.5 0.0 0.0026 18.2 0.0 1.2 1 0 0 1 1 1 1 Thioesterase-like superfamily MaoC_dehydrat_N PF13452.6 EME70141.1 - 0.0083 16.3 0.0 0.019 15.1 0.0 1.7 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase LPAM_1 PF08139.12 EME70142.1 - 0.013 16.0 5.0 0.019 15.5 5.0 1.2 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site LPAM_2 PF13627.6 EME70142.1 - 0.28 11.1 4.0 0.39 10.6 4.0 1.2 1 0 0 1 1 1 0 Prokaryotic lipoprotein-attachment site Orn_Arg_deC_N PF02784.16 EME70143.1 - 3.8e-32 111.6 0.0 4.8e-32 111.3 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.22 EME70143.1 - 0.00084 19.5 0.0 0.00094 19.4 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain SET PF00856.28 EME70144.1 - 1.1e-06 29.1 0.0 0.00016 22.1 0.0 2.2 1 1 1 2 2 2 2 SET domain Guanylate_cyc PF00211.20 EME70145.1 - 1.1e-13 51.2 0.0 2.1e-13 50.3 0.0 1.3 1 0 0 1 1 1 1 Adenylate and Guanylate cyclase catalytic domain TPR_19 PF14559.6 EME70145.1 - 0.014 15.8 6.3 0.14 12.7 0.1 3.8 3 0 0 3 3 3 0 Tetratricopeptide repeat DUF2379 PF09543.10 EME70145.1 - 0.025 14.8 2.6 0.54 10.5 0.2 3.6 3 1 0 3 3 3 0 Protein of unknown function (DUF2379) DUF1641 PF07849.11 EME70145.1 - 0.059 13.3 0.2 0.45 10.4 0.0 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1641) TPR_10 PF13374.6 EME70145.1 - 0.26 11.2 1.6 10 6.1 0.0 3.6 4 0 0 4 4 4 0 Tetratricopeptide repeat HATPase_c PF02518.26 EME70146.1 - 8.3e-24 84.3 0.0 1.7e-23 83.2 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HAMP PF00672.25 EME70146.1 - 1.9e-07 31.4 2.0 3.3e-07 30.6 0.6 2.2 2 0 0 2 2 2 1 HAMP domain HisKA PF00512.25 EME70146.1 - 2e-07 31.0 1.5 5.5e-07 29.5 1.5 1.9 1 1 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.6 EME70146.1 - 0.00031 20.6 0.0 0.00051 19.9 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF4229 PF14012.6 EME70146.1 - 1.4 9.1 10.3 0.073 13.2 1.3 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF4229) Trans_reg_C PF00486.28 EME70147.1 - 3.2e-21 75.2 0.0 5.2e-21 74.5 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal Response_reg PF00072.24 EME70147.1 - 1.8e-05 24.8 0.0 2.7e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain B3_4 PF03483.17 EME70148.1 - 2.8e-61 206.2 0.0 4.4e-61 205.6 0.0 1.3 1 0 0 1 1 1 1 B3/4 domain tRNA_synthFbeta PF17759.1 EME70148.1 - 7.2e-44 149.8 0.0 1e-43 149.2 0.0 1.3 1 0 0 1 1 1 1 Phenylalanyl tRNA synthetase beta chain CLM domain FDX-ACB PF03147.14 EME70148.1 - 1.4e-23 83.1 0.1 2.7e-23 82.2 0.1 1.5 1 0 0 1 1 1 1 Ferredoxin-fold anticodon binding domain tRNA_bind PF01588.20 EME70148.1 - 4.5e-23 81.2 0.1 1.4e-22 79.6 0.1 1.9 1 0 0 1 1 1 1 Putative tRNA binding domain B5 PF03484.15 EME70148.1 - 2e-17 63.3 0.1 1.3e-16 60.6 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetase B5 domain DUF4908 PF16252.5 EME70148.1 - 0.0018 17.9 0.5 0.0018 17.9 0.5 2.3 3 0 0 3 3 3 1 Domain of unknown function (DUF4908) tRNA-synt_2d PF01409.20 EME70149.1 - 7.4e-103 343.3 0.0 8.7e-103 343.0 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) Phe_tRNA-synt_N PF02912.18 EME70149.1 - 5.4e-22 77.5 0.4 3.4e-21 74.9 1.3 1.8 2 0 0 2 2 2 1 Aminoacyl tRNA synthetase class II, N-terminal domain tRNA_synthFbeta PF17759.1 EME70149.1 - 0.11 12.0 0.0 2 7.8 0.0 2.3 2 0 0 2 2 2 0 Phenylalanyl tRNA synthetase beta chain CLM domain Ribosomal_L20 PF00453.18 EME70150.1 - 2.6e-50 169.0 4.0 3e-50 168.8 4.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L20 DDE_Tnp_IS66 PF03050.14 EME70150.1 - 0.0028 17.2 0.0 0.007 15.9 0.0 1.7 1 1 0 1 1 1 1 Transposase IS66 family Ribosomal_L35p PF01632.19 EME70151.1 - 1.3e-21 76.9 8.0 1.4e-21 76.7 8.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L35 EamA PF00892.20 EME70152.1 - 3.3e-31 108.3 37.0 2.4e-16 60.2 18.8 2.0 2 0 0 2 2 2 2 EamA-like transporter family RseC_MucC PF04246.12 EME70152.1 - 2.9 7.9 16.7 2.4 8.1 2.8 3.1 2 1 1 3 3 3 0 Positive regulator of sigma(E), RseC/MucC ABC_tran PF00005.27 EME70153.1 - 1.9e-57 193.6 0.0 1.1e-28 100.5 0.0 2.2 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 EME70153.1 - 1.2e-14 54.9 1.4 2.9e-05 24.0 0.1 4.0 4 0 0 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 EME70153.1 - 7.9e-12 45.1 0.0 4e-05 23.2 0.0 3.0 2 2 0 2 2 2 2 RecF/RecN/SMC N terminal domain oligo_HPY PF08352.12 EME70153.1 - 9.7e-11 42.0 0.1 0.00011 22.7 0.0 2.5 2 0 0 2 2 2 2 Oligopeptide/dipeptide transporter, C-terminal region AAA_22 PF13401.6 EME70153.1 - 3e-08 34.0 1.4 0.0076 16.5 0.2 3.4 2 2 0 2 2 2 2 AAA domain AAA_29 PF13555.6 EME70153.1 - 7.1e-07 28.9 0.7 0.017 14.8 0.1 2.3 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_16 PF13191.6 EME70153.1 - 3.3e-06 27.6 3.2 0.0058 17.0 0.1 2.6 2 1 0 2 2 2 2 AAA ATPase domain Mg_chelatase PF01078.21 EME70153.1 - 5.4e-06 25.9 3.0 0.031 13.7 0.1 3.0 3 0 0 3 3 3 2 Magnesium chelatase, subunit ChlI AAA_7 PF12775.7 EME70153.1 - 0.00064 19.3 0.2 0.7 9.4 0.0 2.3 2 0 0 2 2 2 2 P-loop containing dynein motor region AAA PF00004.29 EME70153.1 - 0.00067 20.1 0.0 2.4 8.6 0.0 3.2 3 1 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 EME70153.1 - 0.0009 19.2 0.1 1.4 8.8 0.1 2.5 2 0 0 2 2 2 2 NACHT domain AAA_5 PF07728.14 EME70153.1 - 0.00094 19.2 0.9 2.3 8.2 0.0 3.3 4 0 0 4 4 2 2 AAA domain (dynein-related subfamily) AAA_25 PF13481.6 EME70153.1 - 0.0011 18.5 6.0 0.69 9.5 0.1 3.9 4 0 0 4 4 4 2 AAA domain Pox_A32 PF04665.12 EME70153.1 - 0.0012 18.4 0.5 1.5 8.2 0.1 2.3 2 0 0 2 2 2 2 Poxvirus A32 protein CbiA PF01656.23 EME70153.1 - 0.0023 18.0 0.6 2.4 8.2 0.2 3.1 4 0 0 4 4 3 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF87 PF01935.17 EME70153.1 - 0.0029 17.7 1.7 0.88 9.6 0.0 2.2 2 0 0 2 2 2 1 Helicase HerA, central domain AAA_33 PF13671.6 EME70153.1 - 0.0055 16.9 0.6 4.7 7.4 0.3 2.8 2 1 0 2 2 2 0 AAA domain ATPase PF06745.13 EME70153.1 - 0.0064 15.9 0.8 0.5 9.7 0.1 2.3 2 0 0 2 2 2 1 KaiC DUF2075 PF09848.9 EME70153.1 - 0.0067 15.7 0.0 2.1 7.5 0.0 2.1 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) AAA_24 PF13479.6 EME70153.1 - 0.0072 16.1 0.2 2 8.1 0.0 2.2 2 0 0 2 2 2 1 AAA domain PRK PF00485.18 EME70153.1 - 0.0074 16.0 0.0 0.23 11.2 0.0 2.2 2 0 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family ATP-synt_ab PF00006.25 EME70153.1 - 0.0088 15.7 0.1 5.2 6.7 0.0 2.3 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain IstB_IS21 PF01695.17 EME70153.1 - 0.0094 15.7 0.3 2.6 7.7 0.0 2.8 2 0 0 2 2 2 1 IstB-like ATP binding protein RsgA_GTPase PF03193.16 EME70153.1 - 0.011 15.7 1.9 2.8 7.8 0.1 2.3 2 0 0 2 2 2 0 RsgA GTPase MobB PF03205.14 EME70153.1 - 0.013 15.4 0.2 0.17 11.8 0.1 2.4 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B APS_kinase PF01583.20 EME70153.1 - 0.023 14.6 0.3 2.2 8.2 0.1 2.3 2 0 0 2 2 2 0 Adenylylsulphate kinase SbcCD_C PF13558.6 EME70153.1 - 0.031 14.5 0.6 3.2 8.1 0.0 3.5 2 2 0 2 2 2 0 Putative exonuclease SbcCD, C subunit FtsK_SpoIIIE PF01580.18 EME70153.1 - 0.041 13.2 0.5 7.7 5.8 0.0 2.6 3 0 0 3 3 3 0 FtsK/SpoIIIE family AAA_30 PF13604.6 EME70153.1 - 0.054 13.2 2.2 0.68 9.6 0.2 2.8 2 1 0 2 2 2 0 AAA domain NB-ARC PF00931.22 EME70153.1 - 0.054 12.7 0.7 4.7 6.3 0.2 2.2 2 0 0 2 2 2 0 NB-ARC domain T2SSE PF00437.20 EME70153.1 - 0.084 11.9 0.5 2.9 6.9 0.1 2.2 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_18 PF13238.6 EME70153.1 - 0.1 13.1 0.0 0.64 10.6 0.0 2.2 2 0 0 2 2 2 0 AAA domain TIP49 PF06068.13 EME70153.1 - 0.11 11.7 0.4 4 6.5 0.0 2.2 2 0 0 2 2 2 0 TIP49 P-loop domain AAA_23 PF13476.6 EME70153.1 - 0.13 12.8 0.0 3 8.3 0.0 2.1 2 0 0 2 2 2 0 AAA domain GvpD PF07088.11 EME70153.1 - 0.15 10.6 0.2 2.1 6.9 0.1 2.1 2 0 0 2 2 2 0 GvpD gas vesicle protein AAA_13 PF13166.6 EME70153.1 - 0.16 10.6 0.0 6.1 5.4 0.0 2.7 3 0 0 3 3 3 0 AAA domain NTPase_1 PF03266.15 EME70153.1 - 0.17 11.8 0.0 0.95 9.4 0.0 2.1 2 0 0 2 2 2 0 NTPase TsaE PF02367.17 EME70153.1 - 0.21 11.6 0.4 15 5.6 0.1 2.3 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Sigma54_activat PF00158.26 EME70153.1 - 0.21 11.3 3.8 5.1 6.8 0.0 3.3 4 0 0 4 4 3 0 Sigma-54 interaction domain AIG1 PF04548.16 EME70153.1 - 0.54 9.5 2.2 0.61 9.4 0.1 2.0 2 0 0 2 2 2 0 AIG1 family BPD_transp_1 PF00528.22 EME70154.1 - 1.6e-27 96.5 9.3 1.6e-27 96.5 9.3 1.4 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 EME70154.1 - 8e-05 22.5 0.2 8e-05 22.5 0.2 4.0 4 1 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C ABC2_membrane_4 PF12730.7 EME70154.1 - 4.9 7.1 9.9 0.18 11.8 2.8 2.2 3 0 0 3 3 3 0 ABC-2 family transporter protein BPD_transp_1 PF00528.22 EME70155.1 - 3e-36 124.9 10.2 3e-36 124.9 10.2 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF2754 PF10953.8 EME70155.1 - 1.5 9.1 4.3 0.3 11.4 0.3 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2754) SBP_bac_5 PF00496.22 EME70156.1 - 2.9e-79 266.8 0.8 3.7e-79 266.4 0.8 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle FecR PF04773.13 EME70157.1 - 0.00018 22.1 0.0 0.00066 20.3 0.0 1.9 1 1 1 2 2 2 1 FecR protein AdoHcyase PF05221.17 EME70158.1 - 4.8e-147 488.9 0.0 5.4e-147 488.7 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.21 EME70158.1 - 4.9e-82 273.8 1.0 7.6e-82 273.2 1.0 1.3 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.19 EME70158.1 - 1.6e-06 27.6 0.0 3e-06 26.7 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 EME70158.1 - 0.00026 20.6 0.1 0.00076 19.1 0.1 1.7 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain 3HCDH_N PF02737.18 EME70158.1 - 0.0084 16.0 0.3 0.021 14.7 0.3 1.7 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 EME70158.1 - 0.015 15.7 0.3 0.039 14.4 0.3 1.7 1 0 0 1 1 1 0 Putative NAD(P)-binding TrkA_N PF02254.18 EME70158.1 - 0.042 14.1 0.1 0.1 12.8 0.1 1.8 1 1 0 1 1 1 0 TrkA-N domain SpoVAE PF14097.6 EME70158.1 - 0.068 12.8 0.1 0.13 11.9 0.1 1.4 1 0 0 1 1 1 0 Stage V sporulation protein AE1 Urocanase PF01175.18 EME70158.1 - 0.14 11.7 0.1 0.27 10.8 0.1 1.4 1 0 0 1 1 1 0 Urocanase Rossmann-like domain Cupin_2 PF07883.11 EME70159.1 - 2.4e-10 40.0 0.2 3.4e-10 39.5 0.2 1.2 1 0 0 1 1 1 1 Cupin domain Cupin_7 PF12973.7 EME70159.1 - 0.0096 15.8 0.0 0.013 15.4 0.0 1.2 1 0 0 1 1 1 1 ChrR Cupin-like domain PEP-utilizers_C PF02896.18 EME70160.1 - 6.5e-97 324.2 0.0 1e-96 323.5 0.0 1.3 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilisers_N PF05524.13 EME70160.1 - 3.3e-27 94.9 0.4 9.1e-27 93.5 0.4 1.8 1 0 0 1 1 1 1 PEP-utilising enzyme, N-terminal PEP-utilizers PF00391.23 EME70160.1 - 1.7e-17 62.9 1.9 3.8e-17 61.8 1.9 1.7 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain PTS-HPr PF00381.19 EME70161.1 - 4.8e-25 87.6 0.2 5.3e-25 87.5 0.2 1.0 1 0 0 1 1 1 1 PTS HPr component phosphorylation site EIIA-man PF03610.16 EME70162.1 - 6.6e-29 100.5 0.1 7.9e-29 100.3 0.1 1.1 1 0 0 1 1 1 1 PTS system fructose IIA component Tubulin PF00091.25 EME70162.1 - 0.023 14.9 0.0 0.026 14.7 0.0 1.1 1 0 0 1 1 1 0 Tubulin/FtsZ family, GTPase domain ATP_bind_2 PF03668.15 EME70163.1 - 2.5e-85 286.2 0.0 3.1e-85 285.9 0.0 1.0 1 0 0 1 1 1 1 P-loop ATPase protein family AAA_33 PF13671.6 EME70163.1 - 0.00086 19.5 0.7 1.3 9.2 0.1 2.9 2 1 0 2 2 2 2 AAA domain AAA_30 PF13604.6 EME70163.1 - 0.00086 19.1 0.2 0.0014 18.4 0.2 1.3 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 EME70163.1 - 0.0023 18.5 0.5 0.12 12.9 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 EME70163.1 - 0.0054 17.1 0.1 0.017 15.5 0.1 1.8 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 EME70163.1 - 0.013 15.8 0.0 0.028 14.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 EME70163.1 - 0.068 13.4 0.0 0.14 12.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain CPT PF07931.12 EME70163.1 - 0.12 12.2 0.1 17 5.2 0.1 2.4 1 1 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein Hpr_kinase_C PF07475.12 EME70164.1 - 2.6e-21 75.9 0.1 4.3e-21 75.2 0.1 1.4 1 1 0 1 1 1 1 HPr Serine kinase C-terminal domain Mg_chelatase PF01078.21 EME70164.1 - 0.072 12.5 0.1 0.11 11.9 0.1 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI TIP49 PF06068.13 EME70164.1 - 0.091 11.9 0.3 0.13 11.4 0.3 1.1 1 0 0 1 1 1 0 TIP49 P-loop domain AAA_29 PF13555.6 EME70164.1 - 0.12 12.1 0.1 0.2 11.4 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_33 PF13671.6 EME70164.1 - 0.14 12.3 0.0 0.14 12.3 0.0 1.3 1 1 0 1 1 1 0 AAA domain SLT PF01464.20 EME70165.1 - 1.3e-26 92.6 0.0 3.4e-26 91.2 0.0 1.6 1 0 0 1 1 1 1 Transglycosylase SLT domain TPR_2 PF07719.17 EME70165.1 - 0.00093 19.1 2.0 0.039 14.1 0.0 2.9 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_4 PF07721.14 EME70165.1 - 0.024 15.2 0.3 0.024 15.2 0.3 5.8 5 0 0 5 5 5 0 Tetratricopeptide repeat TPR_6 PF13174.6 EME70165.1 - 0.048 14.3 4.2 1.9 9.3 0.0 4.1 3 0 0 3 3 3 0 Tetratricopeptide repeat DUF1848 PF08902.11 EME70166.1 - 5.1e-80 269.0 0.0 5.7e-80 268.8 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1848) MIIP PF15734.5 EME70166.1 - 0.2 11.1 0.4 0.29 10.6 0.4 1.2 1 0 0 1 1 1 0 Migration and invasion-inhibitory Aconitase_2_N PF06434.13 EME70167.1 - 3.1e-95 317.6 0.0 4.6e-95 317.1 0.0 1.3 1 0 0 1 1 1 1 Aconitate hydratase 2 N-terminus Aconitase_B_N PF11791.8 EME70167.1 - 7.9e-61 204.6 0.0 1.4e-60 203.8 0.0 1.5 1 0 0 1 1 1 1 Aconitate B N-terminal domain Aconitase PF00330.20 EME70167.1 - 3.5e-40 138.4 0.0 2.6e-38 132.2 0.0 2.4 1 1 0 1 1 1 1 Aconitase family (aconitate hydratase) Ketoacyl-synt_C PF02801.22 EME70167.1 - 0.06 13.4 0.0 0.13 12.3 0.0 1.5 1 0 0 1 1 1 0 Beta-ketoacyl synthase, C-terminal domain Hemerythrin PF01814.23 EME70168.1 - 3.7e-14 53.5 23.2 4e-07 30.7 7.6 3.1 2 1 1 3 3 3 3 Hemerythrin HHE cation binding domain Glucosaminidase PF01832.20 EME70169.1 - 7.9e-17 61.5 0.0 1.4e-16 60.8 0.0 1.4 1 0 0 1 1 1 1 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase Nfu_N PF08712.11 EME70170.1 - 5e-31 106.6 0.0 7.6e-31 106.0 0.0 1.3 1 0 0 1 1 1 1 Scaffold protein Nfu/NifU N terminal NifU PF01106.17 EME70170.1 - 2.1e-29 101.5 0.0 3e-29 101.0 0.0 1.2 1 0 0 1 1 1 1 NifU-like domain Usp PF00582.26 EME70171.1 - 7.7e-16 58.9 0.0 8.6e-16 58.7 0.0 1.0 1 0 0 1 1 1 1 Universal stress protein family DNA_photolyase PF00875.18 EME70171.1 - 0.017 15.1 0.0 0.022 14.8 0.0 1.1 1 0 0 1 1 1 0 DNA photolyase DUF3088 PF11287.8 EME70171.1 - 0.06 13.1 0.0 0.089 12.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3088) Alph_Pro_TM PF09608.10 EME70172.1 - 2.7e-80 269.5 0.1 3e-80 269.3 0.1 1.0 1 0 0 1 1 1 1 Putative transmembrane protein (Alph_Pro_TM) TcfC PF16967.5 EME70172.1 - 0.036 13.6 0.2 0.078 12.5 0.2 1.5 1 0 0 1 1 1 0 E-set like domain NIL PF09383.10 EME70172.1 - 0.1 12.4 0.0 0.24 11.3 0.0 1.6 1 0 0 1 1 1 0 NIL domain DUF4244 PF14029.6 EME70172.1 - 0.14 11.7 5.2 7.7 6.0 4.2 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF4244) TauE PF01925.19 EME70173.1 - 1.5e-50 172.0 42.6 1.9e-50 171.7 42.6 1.1 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF2333 PF10095.9 EME70174.1 - 3.6e-10 39.4 0.0 0.00045 19.3 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized protein conserved in bacteria (DUF2333) KdpC PF02669.15 EME70174.1 - 0.12 12.2 0.0 0.23 11.3 0.0 1.4 1 0 0 1 1 1 0 K+-transporting ATPase, c chain tRNA-synt_1b PF00579.25 EME70175.1 - 1.1e-77 261.3 0.0 1.2e-77 261.1 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) MurJ PF03023.14 EME70176.1 - 2.9e-116 388.8 30.5 3.8e-116 388.3 30.5 1.2 1 0 0 1 1 1 1 Lipid II flippase MurJ Polysacc_synt_C PF14667.6 EME70176.1 - 1.2e-10 41.6 20.2 1.2e-10 41.6 20.2 4.6 2 2 2 4 4 4 2 Polysaccharide biosynthesis C-terminal domain MatE PF01554.18 EME70176.1 - 2.8e-07 30.3 6.7 2.8e-07 30.3 6.7 3.2 4 1 0 4 4 4 2 MatE Polysacc_synt_3 PF13440.6 EME70176.1 - 0.00046 19.5 6.0 0.00046 19.5 6.0 2.9 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein DUF63 PF01889.17 EME70176.1 - 0.066 13.4 1.0 0.17 12.1 1.0 1.6 1 0 0 1 1 1 0 Membrane protein of unknown function DUF63 Acetyltransf_1 PF00583.25 EME70177.1 - 2.2e-14 53.7 0.2 2.8e-14 53.4 0.2 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 EME70177.1 - 3.2e-09 36.8 0.0 4.1e-09 36.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 EME70177.1 - 1.3e-08 35.1 0.0 1.9e-08 34.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 EME70177.1 - 0.0032 17.6 0.0 0.0053 16.8 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 EME70177.1 - 0.019 15.1 0.0 0.043 13.9 0.0 1.7 2 0 0 2 2 2 0 GCN5-related N-acetyl-transferase FR47 PF08445.10 EME70177.1 - 0.13 12.2 0.0 0.22 11.5 0.0 1.3 1 0 0 1 1 1 0 FR47-like protein Cupredoxin_1 PF13473.6 EME70178.1 - 3.3e-24 85.0 0.0 3.9e-24 84.8 0.0 1.0 1 0 0 1 1 1 1 Cupredoxin-like domain Iron_transport PF10634.9 EME70179.1 - 2.7e-65 219.1 0.4 3.1e-65 218.9 0.4 1.0 1 0 0 1 1 1 1 Fe2+ transport protein OprB PF04966.12 EME70180.1 - 7.9e-16 58.4 7.8 1.1e-14 54.6 7.8 2.2 1 1 0 1 1 1 1 Carbohydrate-selective porin, OprB family ABC_tran_CTD PF16326.5 EME70180.1 - 3.1 8.1 8.0 23 5.3 6.9 2.3 1 1 1 2 2 2 0 ABC transporter C-terminal domain Fer4_5 PF12801.7 EME70181.1 - 6.7e-10 38.8 28.4 4.4e-08 32.9 9.6 3.7 3 0 0 3 3 3 2 4Fe-4S binding domain PGI PF00342.19 EME70182.1 - 6.7e-228 757.1 0.0 7.6e-228 757.0 0.0 1.0 1 0 0 1 1 1 1 Phosphoglucose isomerase Urease_beta PF00699.20 EME70182.1 - 0.055 13.5 0.0 0.11 12.6 0.0 1.4 1 0 0 1 1 1 0 Urease beta subunit PAS_4 PF08448.10 EME70183.1 - 4.8e-13 49.3 0.0 4.9e-08 33.2 0.1 2.1 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 EME70183.1 - 1.1e-10 41.7 0.0 1.7e-07 31.5 0.0 2.1 2 0 0 2 2 2 2 PAS domain PAS PF00989.25 EME70183.1 - 5.9e-06 26.3 0.0 4.8e-05 23.3 0.0 2.0 2 0 0 2 2 2 1 PAS fold PAS_8 PF13188.7 EME70183.1 - 6.9e-06 26.0 0.6 0.001 19.1 0.2 2.4 2 0 0 2 2 2 2 PAS domain GGDEF PF00990.21 EME70184.1 - 2.9e-45 153.9 0.1 6.9e-45 152.7 0.1 1.7 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain PAS_4 PF08448.10 EME70184.1 - 4.4e-15 55.9 0.1 1.6e-14 54.1 0.1 2.0 1 0 0 1 1 1 1 PAS fold PAS PF00989.25 EME70184.1 - 1.3e-10 41.3 0.2 7.2e-10 38.9 0.0 2.2 3 0 0 3 3 3 1 PAS fold PAS_9 PF13426.7 EME70184.1 - 0.00012 22.3 0.0 0.00049 20.3 0.0 2.1 2 0 0 2 2 2 1 PAS domain PAS_8 PF13188.7 EME70184.1 - 0.00025 21.0 0.0 0.001 19.1 0.0 2.1 1 0 0 1 1 1 1 PAS domain Polbeta PF18765.1 EME70185.1 - 4.1e-09 36.4 0.0 5.6e-09 36.0 0.0 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 EME70185.1 - 4.1e-08 33.4 0.0 4.1e-08 33.4 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF294 PF03445.13 EME70185.1 - 0.018 14.9 0.1 0.024 14.5 0.1 1.1 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 RlaP PF10127.9 EME70185.1 - 0.15 11.6 0.0 0.16 11.5 0.0 1.2 1 0 0 1 1 1 0 RNA repair pathway DNA polymerase beta family HEPN PF05168.14 EME70186.1 - 1.5e-09 38.0 0.1 1.6e-09 37.9 0.1 1.1 1 0 0 1 1 1 1 HEPN domain HEPN_SAV_6107 PF18726.1 EME70186.1 - 0.0035 17.8 1.8 0.0047 17.4 1.8 1.2 1 0 0 1 1 1 1 SAV_6107-like HEPN MutL_C PF08676.11 EME70187.1 - 3.6e-49 166.3 0.0 5.6e-49 165.7 0.0 1.3 1 0 0 1 1 1 1 MutL C terminal dimerisation domain DNA_mis_repair PF01119.19 EME70187.1 - 2.7e-36 123.8 0.0 3.8e-36 123.3 0.0 1.2 1 0 0 1 1 1 1 DNA mismatch repair protein, C-terminal domain HATPase_c_3 PF13589.6 EME70187.1 - 2.6e-10 40.3 0.0 4.3e-10 39.5 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.26 EME70187.1 - 4e-06 27.3 0.0 1e-05 26.0 0.0 1.7 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Hemerythrin PF01814.23 EME70188.1 - 4.7e-09 37.0 0.0 5.2e-09 36.8 0.0 1.0 1 0 0 1 1 1 1 Hemerythrin HHE cation binding domain NitrOD5 PF11537.8 EME70188.1 - 0.043 13.9 0.0 6.5 7.0 0.0 2.3 2 0 0 2 2 2 0 Nitrosopumilus output domain 5 GreA_GreB PF01272.19 EME70189.1 - 1.4e-23 82.6 0.1 2.8e-23 81.6 0.1 1.5 1 0 0 1 1 1 1 Transcription elongation factor, GreA/GreB, C-term GreA_GreB_N PF03449.15 EME70189.1 - 1.3e-22 79.7 0.0 2.1e-22 79.1 0.0 1.3 1 0 0 1 1 1 1 Transcription elongation factor, N-terminal Peptidase_M22 PF00814.25 EME70190.1 - 1.1e-92 310.6 0.0 1.2e-92 310.4 0.0 1.0 1 0 0 1 1 1 1 Glycoprotease family DUF1487 PF07368.11 EME70190.1 - 0.0074 15.8 0.0 0.011 15.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1487) Porphobil_deam PF01379.20 EME70191.1 - 9.8e-79 263.6 0.1 1.2e-78 263.3 0.1 1.1 1 0 0 1 1 1 1 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.15 EME70191.1 - 1.9e-19 69.8 0.0 3.4e-19 69.0 0.0 1.4 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain HEM4 PF02602.15 EME70192.1 - 1.9e-27 96.1 0.7 2.2e-27 95.9 0.7 1.0 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD Mitofilin PF09731.9 EME70193.1 - 7.1e-16 58.2 15.0 9.3e-16 57.8 15.0 1.2 1 0 0 1 1 1 1 Mitochondrial inner membrane protein Seryl_tRNA_N PF02403.22 EME70193.1 - 0.074 13.3 1.1 11 6.3 0.4 2.7 1 1 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain ASD2 PF08687.11 EME70193.1 - 1.1 8.8 5.1 3 7.3 2.4 2.0 1 1 1 2 2 2 0 Apx/Shroom domain ASD2 ABC_tran_CTD PF16326.5 EME70193.1 - 1.9 8.8 8.1 2.2 8.6 0.1 3.0 3 0 0 3 3 3 0 ABC transporter C-terminal domain Matrilin_ccoil PF10393.9 EME70193.1 - 6.4 6.7 4.9 2.4 8.1 0.1 2.6 3 0 0 3 3 3 0 Trimeric coiled-coil oligomerisation domain of matrilin HemY_N PF07219.13 EME70194.1 - 7.7e-26 90.4 2.2 7.7e-26 90.4 2.2 5.9 2 1 4 6 6 6 1 HemY protein N-terminus TPR_19 PF14559.6 EME70194.1 - 4.8e-06 27.0 35.7 8.2e-05 23.0 3.2 4.9 2 1 2 5 5 5 2 Tetratricopeptide repeat ANAPC3 PF12895.7 EME70194.1 - 0.0061 16.8 3.0 8.8 6.6 0.1 3.9 3 1 1 4 4 4 2 Anaphase-promoting complex, cyclosome, subunit 3 Anti-TRAP PF15777.5 EME70194.1 - 0.016 15.1 1.2 0.032 14.2 1.2 1.5 1 0 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein TPR_2 PF07719.17 EME70194.1 - 0.029 14.5 0.1 0.029 14.5 0.1 5.9 6 0 0 6 6 6 0 Tetratricopeptide repeat TPR_14 PF13428.6 EME70194.1 - 0.03 15.1 3.5 0.03 15.1 3.5 7.2 2 1 5 7 7 7 0 Tetratricopeptide repeat Cyt_bd_oxida_II PF02322.15 EME70194.1 - 0.069 12.5 1.7 0.12 11.8 1.7 1.3 1 0 0 1 1 1 0 Cytochrome bd terminal oxidase subunit II TPR_7 PF13176.6 EME70194.1 - 0.085 12.9 6.9 15 5.9 0.0 4.8 5 0 0 5 5 5 0 Tetratricopeptide repeat RPEL PF02755.15 EME70194.1 - 1.4 8.7 3.2 1.7 8.5 0.2 2.6 3 0 0 3 3 3 0 RPEL repeat Rubredoxin_2 PF18073.1 EME70194.1 - 4.9 7.0 7.7 1.6 8.5 4.8 1.7 2 0 0 2 2 2 0 Rubredoxin metal binding domain Cytochrom_C PF00034.21 EME70195.1 - 3.9e-19 69.6 0.5 2.5e-09 38.2 0.0 2.7 2 1 0 2 2 2 2 Cytochrome c Cytochrome_CBB3 PF13442.6 EME70195.1 - 2.1e-15 56.8 0.1 1.2e-07 32.0 0.0 2.2 2 0 0 2 2 2 2 Cytochrome C oxidase, cbb3-type, subunit III DHOR PF06537.11 EME70195.1 - 0.0066 15.1 0.8 1.4 7.5 0.1 2.2 1 1 0 2 2 2 2 Di-haem oxidoreductase, putative peroxidase Cytochrome_C7 PF14522.6 EME70195.1 - 0.01 15.8 0.0 3.5 7.7 0.0 2.3 2 0 0 2 2 2 0 Cytochrome c7 and related cytochrome c Paired_CXXCH_1 PF09699.10 EME70195.1 - 0.022 14.5 0.6 4.8 7.0 0.1 2.4 2 0 0 2 2 2 0 Doubled CXXCH motif (Paired_CXXCH_1) DUF3365 PF11845.8 EME70195.1 - 0.5 10.7 4.8 15 5.9 0.1 3.1 1 1 2 3 3 3 0 Protein of unknown function (DUF3365) PSCyt1 PF07635.11 EME70195.1 - 2.5 8.7 4.7 12 6.6 0.3 2.8 2 1 0 2 2 2 0 Planctomycete cytochrome C CobU PF02283.16 EME70196.1 - 2.5e-57 193.1 0.0 2.8e-57 193.0 0.0 1.0 1 0 0 1 1 1 1 Cobinamide kinase / cobinamide phosphate guanyltransferase RHH_1 PF01402.21 EME70196.1 - 0.0083 16.0 0.9 0.2 11.7 0.0 2.5 3 0 0 3 3 3 1 Ribbon-helix-helix protein, copG family cobW PF02492.19 EME70197.1 - 5.7e-57 192.1 0.0 7.3e-57 191.8 0.0 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CobW_C PF07683.14 EME70197.1 - 2.8e-15 56.0 0.0 5.2e-15 55.1 0.0 1.5 1 0 0 1 1 1 1 Cobalamin synthesis protein cobW C-terminal domain AAA_16 PF13191.6 EME70197.1 - 0.0061 17.0 1.6 0.013 15.9 1.0 2.1 1 1 0 1 1 1 1 AAA ATPase domain Arf PF00025.21 EME70197.1 - 0.0066 15.9 0.0 0.49 9.8 0.0 2.2 2 0 0 2 2 2 1 ADP-ribosylation factor family TsaE PF02367.17 EME70197.1 - 0.026 14.5 0.1 0.051 13.6 0.1 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE MeaB PF03308.16 EME70197.1 - 0.031 13.3 0.2 0.55 9.2 0.1 2.2 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Viral_helicase1 PF01443.18 EME70197.1 - 0.052 13.3 0.0 0.084 12.6 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase RsgA_GTPase PF03193.16 EME70197.1 - 0.077 12.9 0.0 4.9 7.0 0.0 2.4 2 0 0 2 2 2 0 RsgA GTPase AAA_18 PF13238.6 EME70197.1 - 0.094 13.3 0.0 0.21 12.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 EME70197.1 - 0.098 12.9 0.8 0.18 12.1 0.0 1.8 2 0 0 2 2 1 0 AAA domain AAA_28 PF13521.6 EME70197.1 - 0.11 12.7 0.0 0.24 11.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain MobB PF03205.14 EME70197.1 - 0.14 12.1 0.1 0.3 11.0 0.1 1.7 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B TrwB_AAD_bind PF10412.9 EME70197.1 - 0.14 11.0 0.2 0.22 10.4 0.2 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain GTP_EFTU PF00009.27 EME70197.1 - 0.14 11.6 0.2 3.3 7.2 0.1 2.4 2 1 0 2 2 2 0 Elongation factor Tu GTP binding domain AAA_33 PF13671.6 EME70197.1 - 0.19 11.9 0.0 0.38 10.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain CobN-Mg_chel PF02514.16 EME70198.1 - 0 1293.3 0.0 0 1293.1 0.0 1.0 1 0 0 1 1 1 1 CobN/Magnesium Chelatase DUF1323 PF07037.11 EME70201.1 - 0.00032 21.1 0.1 0.00057 20.3 0.1 1.4 1 0 0 1 1 1 1 Putative transcription regulator (DUF1323) HTH_24 PF13412.6 EME70201.1 - 0.00071 19.1 0.0 0.0015 18.0 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 EME70201.1 - 0.013 15.4 0.0 0.031 14.2 0.0 1.6 1 0 0 1 1 1 0 MarR family HTH_Crp_2 PF13545.6 EME70201.1 - 0.016 15.1 0.2 0.082 12.9 0.0 2.0 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_11 PF08279.12 EME70201.1 - 0.045 13.7 0.0 0.13 12.2 0.0 1.8 2 0 0 2 2 2 0 HTH domain TrmB PF01978.19 EME70201.1 - 0.054 13.4 0.0 0.1 12.5 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_29 PF13551.6 EME70201.1 - 0.06 13.4 0.0 0.16 12.0 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn helix Sigma70_r4 PF04545.16 EME70201.1 - 0.083 12.4 0.0 0.17 11.4 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_AsnC-type PF13404.6 EME70201.1 - 0.089 12.6 0.0 0.2 11.5 0.0 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_23 PF13384.6 EME70201.1 - 0.091 12.6 0.0 0.24 11.2 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain HTH_10 PF04967.12 EME70201.1 - 0.099 12.5 0.0 0.24 11.2 0.0 1.7 1 0 0 1 1 1 0 HTH DNA binding domain HTH_CodY PF08222.11 EME70201.1 - 0.14 11.7 0.0 0.72 9.5 0.0 1.9 2 0 0 2 2 2 0 CodY helix-turn-helix domain Resolvase PF00239.21 EME70202.1 - 9.3e-42 142.6 0.5 1.1e-41 142.3 0.5 1.1 1 0 0 1 1 1 1 Resolvase, N terminal domain HTH_7 PF02796.15 EME70202.1 - 2.6e-09 37.0 0.0 5.9e-09 35.9 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_29 PF13551.6 EME70202.1 - 1.2e-05 25.2 0.6 6e-05 23.0 0.1 2.4 3 0 0 3 3 3 1 Winged helix-turn helix HTH_IclR PF09339.10 EME70202.1 - 5.6e-05 22.9 0.9 0.00046 19.9 0.1 2.4 2 1 0 2 2 2 1 IclR helix-turn-helix domain HTH_23 PF13384.6 EME70202.1 - 0.00016 21.3 0.3 0.00032 20.4 0.0 1.7 2 0 0 2 2 2 1 Homeodomain-like domain HTH_38 PF13936.6 EME70202.1 - 0.0021 17.8 1.8 0.0039 16.9 0.1 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.19 EME70202.1 - 0.0036 17.1 0.0 0.0067 16.3 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_28 PF13518.6 EME70202.1 - 0.0038 17.3 0.2 0.011 15.9 0.2 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_ECF PF07638.11 EME70202.1 - 0.011 15.6 0.2 0.043 13.7 0.1 2.0 2 0 0 2 2 2 0 ECF sigma factor HTH_22 PF13309.6 EME70202.1 - 0.014 15.4 0.0 0.037 14.1 0.0 1.7 1 0 0 1 1 1 0 HTH domain TetR_N PF00440.23 EME70202.1 - 0.02 14.7 0.9 0.054 13.3 0.3 2.1 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family GerE PF00196.19 EME70202.1 - 0.026 14.1 0.0 0.053 13.1 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 EME70202.1 - 0.029 14.0 0.0 0.075 12.7 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_8 PF02954.19 EME70202.1 - 0.053 13.3 0.7 0.053 13.3 0.7 2.6 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family Phage_integrase PF00589.22 EME70205.1 - 1.6e-06 28.1 0.0 5.9e-05 22.9 0.0 3.1 4 0 0 4 4 4 1 Phage integrase family GHMP_kinases_C PF08544.13 EME70206.1 - 4.4e-07 30.2 0.2 9e-07 29.2 0.2 1.5 1 0 0 1 1 1 1 GHMP kinases C terminal GHMP_kinases_N PF00288.26 EME70206.1 - 6.5e-07 29.5 2.0 6.5e-07 29.5 2.0 2.0 2 0 0 2 2 2 1 GHMP kinases N terminal domain TPR_16 PF13432.6 EME70207.1 - 7.4e-28 96.9 58.9 3.4e-09 37.2 0.1 9.1 8 1 0 8 8 8 7 Tetratricopeptide repeat TPR_2 PF07719.17 EME70207.1 - 3.3e-26 89.2 38.7 8.3e-05 22.4 0.1 11.2 12 0 0 12 12 12 7 Tetratricopeptide repeat TPR_19 PF14559.6 EME70207.1 - 1.7e-22 79.7 31.7 2.4e-05 24.8 0.6 8.3 7 1 2 9 9 9 6 Tetratricopeptide repeat TPR_14 PF13428.6 EME70207.1 - 6.5e-19 67.0 62.1 3.7e-05 24.2 0.1 12.5 3 3 11 14 14 14 6 Tetratricopeptide repeat TPR_11 PF13414.6 EME70207.1 - 5.1e-17 61.3 22.1 7.6e-07 28.7 0.0 10.0 10 3 2 12 12 11 4 TPR repeat TPR_1 PF00515.28 EME70207.1 - 2.2e-15 55.7 13.2 0.00013 21.6 0.0 8.8 10 0 0 10 10 8 4 Tetratricopeptide repeat TPR_12 PF13424.6 EME70207.1 - 1.8e-13 50.6 33.9 0.0018 18.6 0.0 10.1 9 3 0 9 9 9 2 Tetratricopeptide repeat TPR_21 PF09976.9 EME70207.1 - 2.6e-12 46.9 18.8 1.7e-07 31.1 4.9 4.9 4 1 1 5 5 5 3 Tetratricopeptide repeat-like domain TPR_8 PF13181.6 EME70207.1 - 4.5e-11 42.1 11.4 0.0011 19.0 0.0 8.5 9 0 0 9 9 8 1 Tetratricopeptide repeat TPR_17 PF13431.6 EME70207.1 - 1.7e-10 40.6 4.5 0.12 12.9 0.0 7.8 9 1 0 10 10 8 2 Tetratricopeptide repeat TPR_9 PF13371.6 EME70207.1 - 1.8e-10 40.8 27.8 6.5e-06 26.2 0.0 6.7 5 2 1 6 6 6 2 Tetratricopeptide repeat TPR_7 PF13176.6 EME70207.1 - 4.4e-09 35.7 20.1 0.0083 16.1 0.0 8.3 8 1 1 9 9 9 3 Tetratricopeptide repeat TPR_15 PF13429.6 EME70207.1 - 1.1e-08 34.6 21.4 2.9e-07 30.0 0.3 4.7 2 1 2 4 4 4 2 Tetratricopeptide repeat TPR_6 PF13174.6 EME70207.1 - 1.7e-08 34.5 33.9 0.028 15.0 0.2 9.4 11 0 0 11 11 9 3 Tetratricopeptide repeat ANAPC3 PF12895.7 EME70207.1 - 2.3e-05 24.5 2.1 0.84 9.9 0.0 4.2 3 1 1 4 4 4 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_10 PF13374.6 EME70207.1 - 0.006 16.4 44.9 0.013 15.3 0.1 9.0 10 0 0 10 10 10 3 Tetratricopeptide repeat NARP1 PF12569.8 EME70207.1 - 0.02 13.8 0.0 5.3 5.8 0.0 3.1 3 0 0 3 3 3 0 NMDA receptor-regulated protein 1 PPR PF01535.20 EME70207.1 - 0.022 15.0 0.7 36 4.9 0.0 4.6 4 0 0 4 4 4 0 PPR repeat Fis1_TPR_C PF14853.6 EME70207.1 - 0.024 14.7 0.2 1.9 8.6 0.0 3.7 4 0 0 4 4 4 0 Fis1 C-terminal tetratricopeptide repeat BTAD PF03704.17 EME70207.1 - 0.15 12.5 0.0 0.15 12.5 0.0 4.6 3 1 0 4 4 4 0 Bacterial transcriptional activator domain HemY_N PF07219.13 EME70207.1 - 0.36 11.0 10.7 5.2 7.3 0.3 5.6 5 1 1 6 6 6 0 HemY protein N-terminus Sel1 PF08238.12 EME70207.1 - 1.4 9.7 11.5 10 6.9 0.7 5.2 4 2 1 5 5 5 0 Sel1 repeat TPR_20 PF14561.6 EME70207.1 - 4 7.8 16.8 2 8.8 0.2 5.1 5 2 0 6 6 4 0 Tetratricopeptide repeat ETF_QO PF05187.13 EME70208.1 - 1.1e-51 173.4 0.1 2e-51 172.5 0.1 1.4 1 0 0 1 1 1 1 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S DAO PF01266.24 EME70208.1 - 8.2e-09 35.5 2.8 5.2e-05 23.0 0.7 2.3 1 1 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 EME70208.1 - 2.5e-08 34.0 0.1 3.6e-07 30.3 0.1 2.5 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 EME70208.1 - 2.8e-08 33.3 0.1 6.6e-07 28.8 0.1 2.6 3 0 0 3 3 3 1 Thi4 family FAD_binding_2 PF00890.24 EME70208.1 - 5.6e-08 32.3 1.5 2.7e-06 26.8 1.2 2.2 2 0 0 2 2 2 1 FAD binding domain HI0933_like PF03486.14 EME70208.1 - 8.2e-06 24.8 0.3 1.2e-05 24.3 0.3 1.2 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox_3 PF13738.6 EME70208.1 - 5.9e-05 22.5 0.6 8.9e-05 21.9 0.6 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 EME70208.1 - 6.1e-05 22.4 0.0 9.9e-05 21.7 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 EME70208.1 - 0.00018 20.7 0.5 0.00018 20.7 0.5 1.8 2 0 0 2 2 2 1 Lycopene cyclase protein Pyr_redox PF00070.27 EME70208.1 - 0.00021 21.8 0.1 0.052 14.1 0.3 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 EME70208.1 - 0.00047 19.1 0.6 0.064 12.1 0.3 2.5 2 1 1 3 3 3 1 Tryptophan halogenase FAD_binding_3 PF01494.19 EME70208.1 - 0.00083 18.7 0.6 0.0037 16.6 0.0 2.0 2 0 0 2 2 2 1 FAD binding domain FAD_oxidored PF12831.7 EME70208.1 - 0.00088 18.7 0.5 0.0017 17.8 0.5 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase K_oxygenase PF13434.6 EME70208.1 - 0.0023 17.1 0.0 0.0035 16.5 0.0 1.2 1 0 0 1 1 1 1 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_9 PF13454.6 EME70208.1 - 0.0079 16.2 0.1 0.019 14.9 0.1 1.7 1 1 0 1 1 1 1 FAD-NAD(P)-binding GIDA PF01134.22 EME70208.1 - 0.016 14.3 0.4 0.025 13.7 0.4 1.3 1 0 0 1 1 1 0 Glucose inhibited division protein A Fer4_7 PF12838.7 EME70208.1 - 0.033 14.8 0.7 0.071 13.7 0.7 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain SlyX PF04102.12 EME70209.1 - 0.033 14.8 0.3 0.036 14.7 0.3 1.1 1 0 0 1 1 1 0 SlyX bZIP_2 PF07716.15 EME70209.1 - 0.085 12.9 0.0 0.091 12.9 0.0 1.0 1 0 0 1 1 1 0 Basic region leucine zipper LPP PF04728.13 EME70209.1 - 0.18 12.2 2.1 0.19 12.1 2.1 1.1 1 0 0 1 1 1 0 Lipoprotein leucine-zipper Peptidase_M16_C PF05193.21 EME70210.1 - 1.1e-29 103.7 0.0 2.4e-29 102.7 0.0 1.6 2 0 0 2 2 2 1 Peptidase M16 inactive domain Peptidase_M16 PF00675.20 EME70210.1 - 0.00027 20.9 0.0 0.00043 20.3 0.0 1.2 1 0 0 1 1 1 1 Insulinase (Peptidase family M16) Peptidase_M16_C PF05193.21 EME70211.1 - 2.3e-29 102.7 0.0 4.8e-29 101.7 0.0 1.6 1 0 0 1 1 1 1 Peptidase M16 inactive domain Peptidase_M16 PF00675.20 EME70211.1 - 4.5e-25 88.4 0.0 8.2e-25 87.5 0.0 1.4 1 0 0 1 1 1 1 Insulinase (Peptidase family M16) DUF3035 PF11233.8 EME70212.1 - 2.4e-45 154.3 3.9 3e-45 154.0 3.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3035) Peptidase_A8 PF01252.18 EME70213.1 - 3e-37 128.0 2.0 3.4e-37 127.8 2.0 1.0 1 0 0 1 1 1 1 Signal peptidase (SPase) II tRNA-synt_1 PF00133.22 EME70214.1 - 8.5e-185 615.5 0.0 1e-184 615.2 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 EME70214.1 - 4e-23 82.1 0.0 6.6e-23 81.4 0.0 1.3 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 EME70214.1 - 6.5e-21 74.5 0.0 8.3e-11 41.3 0.0 3.5 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 EME70214.1 - 9.9e-08 31.7 0.0 0.0004 19.8 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 EME70214.1 - 1e-05 24.7 0.0 5.1e-05 22.4 0.0 1.8 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1_2 PF13603.6 EME70214.1 - 0.0001 21.9 0.0 0.00018 21.1 0.0 1.3 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 zf-FPG_IleRS PF06827.14 EME70214.1 - 0.011 15.5 3.9 0.025 14.4 3.9 1.7 1 0 0 1 1 1 0 Zinc finger found in FPG and IleRS FAD_syn PF06574.12 EME70215.1 - 5.1e-51 172.7 0.0 6.6e-51 172.3 0.0 1.1 1 0 0 1 1 1 1 FAD synthetase Flavokinase PF01687.17 EME70215.1 - 1.1e-35 122.2 0.0 1.8e-35 121.6 0.0 1.3 1 0 0 1 1 1 1 Riboflavin kinase CTP_transf_like PF01467.26 EME70215.1 - 0.13 12.5 0.1 0.31 11.2 0.1 1.8 2 0 0 2 2 2 0 Cytidylyltransferase-like MaoC_dehydratas PF01575.19 EME70216.1 - 1.5e-26 92.4 0.2 1.9e-26 92.0 0.2 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 EME70216.1 - 3.4e-07 30.4 0.0 4.6e-07 30.0 0.0 1.2 1 0 0 1 1 1 1 N-terminal half of MaoC dehydratase 4HBT PF03061.22 EME70216.1 - 0.0044 17.3 0.0 0.0078 16.5 0.0 1.4 1 0 0 1 1 1 1 Thioesterase superfamily Homoserine_dh PF00742.19 EME70216.1 - 0.022 14.7 0.4 0.28 11.1 0.1 2.0 2 0 0 2 2 2 0 Homoserine dehydrogenase Rho_RNA_bind PF07497.12 EME70216.1 - 0.19 11.6 0.0 0.28 11.1 0.0 1.2 1 0 0 1 1 1 0 Rho termination factor, RNA-binding domain Flag1_repress PF03614.13 EME70218.1 - 0.18 11.6 0.0 0.22 11.3 0.0 1.1 1 0 0 1 1 1 0 Repressor of phase-1 flagellin 4HBT PF03061.22 EME70219.1 - 3e-09 37.1 0.0 4.7e-09 36.5 0.0 1.3 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_2 PF13279.6 EME70219.1 - 1.2e-08 35.5 0.0 1.5e-08 35.1 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily Acyl-ACP_TE PF01643.17 EME70219.1 - 2.2e-05 23.8 0.0 0.019 14.3 0.0 2.0 1 1 0 2 2 2 2 Acyl-ACP thioesterase EamA PF00892.20 EME70220.1 - 2.9e-34 118.2 31.9 5.7e-19 68.6 12.6 2.0 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.16 EME70220.1 - 0.041 13.2 2.9 0.034 13.5 0.4 1.9 1 1 0 2 2 2 0 Triose-phosphate Transporter family EmrE PF13536.6 EME70220.1 - 0.085 12.4 11.5 0.14 11.7 11.5 1.5 1 1 0 1 1 1 0 Putative multidrug resistance efflux transporter LysR_substrate PF03466.20 EME70221.1 - 3e-38 131.3 10.2 3e-38 131.3 10.2 1.6 2 0 0 2 2 2 1 LysR substrate binding domain HTH_1 PF00126.27 EME70221.1 - 2.4e-19 69.1 2.3 5.2e-19 67.9 2.3 1.6 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family MarR_2 PF12802.7 EME70221.1 - 0.003 17.4 0.1 0.01 15.7 0.1 1.9 1 0 0 1 1 1 1 MarR family HTH_30 PF13556.6 EME70221.1 - 0.0056 16.5 0.0 0.021 14.6 0.0 2.0 1 1 1 2 2 2 1 PucR C-terminal helix-turn-helix domain HTH_20 PF12840.7 EME70221.1 - 0.016 15.2 2.9 1 9.5 0.1 2.6 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_28 PF13518.6 EME70221.1 - 0.076 13.2 0.1 0.18 11.9 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.6 EME70221.1 - 0.08 12.5 0.0 0.15 11.7 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 EME70221.1 - 0.093 12.7 0.0 0.2 11.7 0.0 1.5 1 0 0 1 1 1 0 HTH domain Cro PF09048.10 EME70221.1 - 0.19 11.8 0.0 0.33 11.0 0.0 1.4 1 0 0 1 1 1 0 Cro Ferritin PF00210.24 EME70222.1 - 6.7e-36 123.3 0.2 7.6e-36 123.2 0.2 1.0 1 0 0 1 1 1 1 Ferritin-like domain Ferritin PF00210.24 EME70223.1 - 1.6e-35 122.1 5.4 1.8e-35 121.9 5.4 1.1 1 0 0 1 1 1 1 Ferritin-like domain DUF5446 PF17522.2 EME70223.1 - 0.0054 16.9 0.2 0.097 12.8 0.1 2.3 2 0 0 2 2 2 1 Family of unknown function (DUF5446) Phage_TAC_12 PF12363.8 EME70223.1 - 0.0067 16.8 0.4 0.02 15.3 0.1 1.9 2 1 1 3 3 3 1 Phage tail assembly chaperone protein, TAC Imm6 PF14434.6 EME70223.1 - 0.024 14.6 0.2 0.041 13.8 0.2 1.4 1 0 0 1 1 1 0 Immunity protein Imm6 OMPdecase PF00215.24 EME70223.1 - 0.037 13.6 0.1 0.12 11.9 0.0 1.8 2 0 0 2 2 2 0 Orotidine 5'-phosphate decarboxylase / HUMPS family DUF2730 PF10805.8 EME70223.1 - 0.078 13.1 0.2 1.2 9.2 0.0 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF2730) HATPase_c PF02518.26 EME70224.1 - 4.9e-26 91.4 0.0 1.4e-25 89.9 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dCache_1 PF02743.18 EME70224.1 - 1.1e-12 48.3 0.0 2.2e-12 47.3 0.0 1.5 1 0 0 1 1 1 1 Cache domain PAS_4 PF08448.10 EME70224.1 - 3.6e-12 46.5 1.1 6.1e-09 36.1 0.9 2.8 2 0 0 2 2 2 2 PAS fold PAS_3 PF08447.12 EME70224.1 - 2.2e-11 43.9 0.2 1.3e-09 38.3 0.1 3.0 3 0 0 3 3 3 1 PAS fold PAS PF00989.25 EME70224.1 - 2.8e-11 43.4 0.0 2.1e-07 30.9 0.0 2.6 2 0 0 2 2 2 2 PAS fold HisKA PF00512.25 EME70224.1 - 1.4e-10 41.1 1.0 2.4e-10 40.3 0.0 2.0 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.7 EME70224.1 - 5.4e-10 39.4 0.0 1.8e-05 24.9 0.0 2.6 2 0 0 2 2 2 2 PAS domain PAS_8 PF13188.7 EME70224.1 - 4e-06 26.7 0.0 0.051 13.6 0.0 3.0 2 0 0 2 2 2 2 PAS domain HATPase_c_5 PF14501.6 EME70224.1 - 3.4e-05 23.7 0.0 6.5e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.6 EME70224.1 - 0.054 13.3 0.0 0.13 12.0 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase sCache_3_2 PF17203.4 EME70224.1 - 0.055 13.6 0.8 1.7 8.8 0.1 3.3 3 0 0 3 3 3 0 Single cache domain 3 HATPase_c_2 PF13581.6 EME70224.1 - 0.058 13.4 0.3 0.28 11.1 0.0 2.1 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain Pdase_C33_assoc PF14756.6 EME70224.1 - 0.15 12.0 0.0 0.29 11.1 0.0 1.4 1 0 0 1 1 1 0 Peptidase_C33-associated domain RCC1_2 PF13540.6 EME70225.1 - 0.13 12.1 0.3 0.23 11.3 0.1 1.5 2 0 0 2 2 2 0 Regulator of chromosome condensation (RCC1) repeat PdaC PF13739.6 EME70225.1 - 0.2 12.6 0.0 0.27 12.2 0.0 1.2 1 0 0 1 1 1 0 Deacetylase PdaC DNA_pol3_chi PF04364.13 EME70226.1 - 2e-38 131.6 0.0 2.3e-38 131.5 0.0 1.0 1 0 0 1 1 1 1 DNA polymerase III chi subunit, HolC JSRP PF15312.6 EME70226.1 - 0.058 13.3 0.0 5.1 7.1 0.0 2.2 2 0 0 2 2 2 0 Junctional sarcoplasmic reticulum protein Glycos_transf_2 PF00535.26 EME70227.1 - 6e-19 68.5 0.0 8.1e-19 68.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 EME70227.1 - 4.9e-06 26.6 0.0 6.5e-06 26.2 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 DUF4141 PF13605.6 EME70227.1 - 0.02 14.1 0.0 0.042 13.1 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4141) Peptidase_M17 PF00883.21 EME70228.1 - 3.4e-105 351.7 0.0 4.4e-105 351.4 0.0 1.1 1 0 0 1 1 1 1 Cytosol aminopeptidase family, catalytic domain Peptidase_M17_N PF02789.17 EME70228.1 - 1.5e-15 57.1 0.1 5.4e-15 55.4 0.0 2.0 2 0 0 2 2 2 1 Cytosol aminopeptidase family, N-terminal domain Peptidase_M17 PF00883.21 EME70229.1 - 1.1e-124 415.7 3.0 1.6e-124 415.2 3.0 1.2 1 0 0 1 1 1 1 Cytosol aminopeptidase family, catalytic domain Peptidase_M17_N PF02789.17 EME70229.1 - 8.3e-26 90.3 3.7 3e-25 88.5 3.7 2.0 1 0 0 1 1 1 1 Cytosol aminopeptidase family, N-terminal domain LPG_synthase_TM PF03706.13 EME70230.1 - 6e-44 150.8 36.8 7.2e-44 150.5 36.8 1.0 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region Phage_Coat_Gp8 PF05371.12 EME70230.1 - 0.062 13.1 0.6 0.42 10.4 0.1 2.2 2 0 0 2 2 2 0 Phage major coat protein, Gp8 Radical_SAM PF04055.21 EME70231.1 - 8e-15 55.6 0.1 1.3e-14 55.0 0.1 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 EME70231.1 - 0.0028 17.9 0.0 0.0049 17.1 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 EME70231.1 - 0.15 12.2 0.0 0.31 11.2 0.0 1.5 1 0 0 1 1 1 0 4Fe-4S single cluster domain DZR PF12773.7 EME70231.1 - 0.42 10.7 0.0 0.42 10.7 0.0 3.3 4 0 0 4 4 4 0 Double zinc ribbon PhdYeFM_antitox PF02604.19 EME70232.1 - 1.6e-10 40.6 0.0 2.1e-10 40.3 0.0 1.1 1 0 0 1 1 1 1 Antitoxin Phd_YefM, type II toxin-antitoxin system PIN PF01850.21 EME70233.1 - 1.6e-11 44.8 0.0 1.7e-11 44.6 0.0 1.0 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.6 EME70233.1 - 0.00015 22.5 0.3 0.00019 22.2 0.3 1.2 1 0 0 1 1 1 1 PIN domain Memo PF01875.17 EME70234.1 - 4.3e-43 147.4 0.0 5.6e-43 147.0 0.0 1.1 1 0 0 1 1 1 1 Memo-like protein AMMECR1 PF01871.17 EME70234.1 - 3.1e-41 140.8 0.0 4.2e-41 140.3 0.0 1.2 1 0 0 1 1 1 1 AMMECR1 Ald_Xan_dh_C2 PF02738.18 EME70235.1 - 9.7e-159 529.3 0.0 1.2e-158 529.0 0.0 1.0 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.22 EME70235.1 - 1.7e-20 73.4 0.0 3.5e-20 72.4 0.0 1.6 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Inositol_P PF00459.25 EME70236.1 - 1.4e-50 172.3 0.0 1.7e-50 172.0 0.0 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family Sulfate_transp PF00916.20 EME70238.1 - 2.2e-31 109.0 24.4 3.4e-31 108.4 24.4 1.2 1 0 0 1 1 1 1 Sulfate permease family cNMP_binding PF00027.29 EME70238.1 - 2.8e-15 56.1 0.0 9.4e-15 54.5 0.0 1.9 2 0 0 2 2 2 1 Cyclic nucleotide-binding domain STAS PF01740.21 EME70238.1 - 5.6e-13 48.6 0.0 9.5e-13 47.8 0.0 1.3 1 0 0 1 1 1 1 STAS domain STAS_2 PF13466.6 EME70238.1 - 0.032 14.6 2.0 0.041 14.2 0.1 2.3 2 0 0 2 2 2 0 STAS domain PAS_9 PF13426.7 EME70239.1 - 2.8e-28 98.2 0.0 2.6e-18 66.2 0.0 2.4 2 0 0 2 2 2 2 PAS domain HATPase_c PF02518.26 EME70239.1 - 2.8e-25 89.0 0.0 6.3e-25 87.9 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 EME70239.1 - 3.7e-25 88.1 0.1 4e-17 62.2 0.0 2.6 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.10 EME70239.1 - 2.2e-19 69.7 0.0 7.7e-09 35.8 0.0 2.7 2 1 0 2 2 2 2 PAS fold PAS_3 PF08447.12 EME70239.1 - 8.4e-18 64.5 0.1 1e-11 44.9 0.0 2.9 3 0 0 3 3 3 2 PAS fold HisKA PF00512.25 EME70239.1 - 2.5e-11 43.5 0.9 1.4e-10 41.1 0.0 2.6 2 1 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.7 EME70239.1 - 2.2e-08 33.9 0.0 2.5e-06 27.4 0.0 2.8 2 0 0 2 2 2 1 PAS domain HATPase_c_5 PF14501.6 EME70239.1 - 0.0057 16.5 0.0 0.012 15.4 0.0 1.5 1 0 0 1 1 1 1 GHKL domain PAS_12 PF18095.1 EME70239.1 - 0.014 15.0 0.1 3 7.5 0.1 2.4 2 0 0 2 2 2 0 UPF0242 C-terminal PAS-like domain HATPase_c_3 PF13589.6 EME70239.1 - 0.087 12.7 0.0 0.2 11.5 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DivIC PF04977.15 EME70239.1 - 0.15 11.8 3.6 5.2 6.9 0.8 2.4 2 0 0 2 2 2 0 Septum formation initiator PEP-CTERM PF07589.11 EME70239.1 - 1.9 8.7 4.1 0.66 10.1 0.8 2.0 2 0 0 2 2 2 0 PEP-CTERM motif SpoIIE PF07228.12 EME70241.1 - 5.4e-31 108.0 0.0 8.6e-31 107.4 0.0 1.3 1 0 0 1 1 1 1 Stage II sporulation protein E (SpoIIE) Response_reg PF00072.24 EME70241.1 - 6e-18 65.1 0.0 1e-17 64.3 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c_2 PF13581.6 EME70242.1 - 2.1e-16 60.0 0.0 3.8e-16 59.2 0.0 1.4 1 1 0 1 1 1 1 Histidine kinase-like ATPase domain AphA_like PF14557.6 EME70242.1 - 0.032 14.0 0.2 0.073 12.8 0.1 1.6 1 1 0 1 1 1 0 Putative AphA-like transcriptional regulator DUF2863 PF11062.8 EME70242.1 - 0.089 11.2 0.0 0.13 10.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2863) STAS PF01740.21 EME70243.1 - 1.3e-12 47.4 0.0 1.3e-12 47.3 0.0 1.0 1 0 0 1 1 1 1 STAS domain STAS_2 PF13466.6 EME70243.1 - 1.6e-08 34.7 0.0 2.1e-08 34.4 0.0 1.1 1 0 0 1 1 1 1 STAS domain MCPsignal PF00015.21 EME70244.1 - 1.2e-34 119.6 26.9 1.2e-34 119.6 26.9 2.5 1 1 1 2 2 2 1 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 EME70244.1 - 1.7e-09 37.9 0.2 1.7e-09 37.9 0.2 3.9 5 1 0 5 5 5 1 HAMP domain DUF1664 PF07889.12 EME70244.1 - 0.0015 18.6 15.0 0.052 13.6 4.5 3.2 2 1 1 3 3 3 2 Protein of unknown function (DUF1664) Syntaxin_2 PF14523.6 EME70244.1 - 1.7 9.1 4.9 1.1 9.7 1.1 2.7 2 2 0 2 2 2 0 Syntaxin-like protein BLOC1_2 PF10046.9 EME70244.1 - 3.1 8.1 7.0 14 6.1 0.4 3.9 3 2 0 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF3450 PF11932.8 EME70244.1 - 4.2 6.6 17.8 0.049 12.9 2.9 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF3450) NPV_P10 PF05531.12 EME70244.1 - 7.3 7.1 10.6 20 5.8 1.8 3.6 3 1 0 3 3 3 0 Nucleopolyhedrovirus P10 protein SKA1 PF07160.12 EME70244.1 - 9 6.1 12.2 9.9 5.9 1.3 2.9 1 1 1 3 3 3 0 Spindle and kinetochore-associated protein 1 Molybdopterin PF00384.22 EME70246.1 - 1.8e-33 116.2 0.0 2.8e-21 76.0 0.0 2.9 3 1 0 3 3 3 2 Molybdopterin oxidoreductase Molybdop_Fe4S4 PF04879.16 EME70246.1 - 1.5e-16 60.1 2.1 2.5e-16 59.4 2.1 1.4 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Molydop_binding PF01568.21 EME70246.1 - 1.2e-10 41.4 0.0 2.6e-10 40.3 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Fer4_11 PF13247.6 EME70247.1 - 2.2e-23 82.2 8.8 2.2e-23 82.2 8.8 1.7 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 EME70247.1 - 3.1e-17 62.9 15.3 7.6e-09 36.0 2.1 2.8 2 2 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 EME70247.1 - 1.6e-11 43.5 38.5 6.8e-08 32.0 1.7 5.5 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_10 PF13237.6 EME70247.1 - 1.7e-11 44.1 24.7 6.1e-06 26.3 11.9 3.8 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 EME70247.1 - 6.7e-11 41.8 33.8 6.4e-06 26.0 1.2 5.0 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_9 PF13187.6 EME70247.1 - 1.7e-10 40.9 23.2 4.8e-05 23.5 6.8 2.9 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 EME70247.1 - 8.1e-10 38.2 35.5 2.6e-05 24.0 1.2 4.8 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_3 PF12798.7 EME70247.1 - 5.5e-09 36.4 34.9 0.032 15.2 6.6 4.7 4 1 0 4 4 4 4 4Fe-4S binding domain Fer4_4 PF12800.7 EME70247.1 - 4.9e-06 26.6 34.6 0.041 14.4 1.2 4.8 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_17 PF13534.6 EME70247.1 - 0.00015 22.2 21.3 0.091 13.3 1.4 4.1 2 1 3 5 5 5 4 4Fe-4S dicluster domain Fer4_21 PF14697.6 EME70247.1 - 0.00024 21.2 27.2 0.00087 19.4 8.3 3.7 3 2 1 4 4 4 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 EME70247.1 - 0.027 15.0 1.0 0.027 15.0 1.0 3.9 5 0 0 5 5 4 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_8 PF13183.6 EME70247.1 - 0.074 13.5 28.1 1.3 9.5 10.4 4.0 2 2 0 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 EME70247.1 - 0.16 12.2 21.8 0.52 10.5 5.2 3.9 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 EME70247.1 - 0.26 12.3 28.7 8.4 7.4 1.7 4.7 3 1 1 4 4 4 0 4Fe-4S double cluster binding domain Fer4_15 PF13459.6 EME70247.1 - 9.2 7.1 20.2 0.73 10.6 0.6 3.5 4 1 0 4 4 3 0 4Fe-4S single cluster domain DmsC PF04976.12 EME70248.1 - 2.6e-27 96.0 19.4 3.4e-27 95.6 19.4 1.1 1 0 0 1 1 1 1 DMSO reductase anchor subunit (DmsC) DUF2946 PF11162.8 EME70251.1 - 0.00025 21.7 12.1 0.00027 21.6 12.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2946) TonB_dep_Rec PF00593.24 EME70252.1 - 8.9e-39 134.6 28.5 1.3e-38 134.1 28.5 1.3 1 0 0 1 1 1 1 TonB dependent receptor Plug PF07715.15 EME70252.1 - 1.8e-17 63.9 0.1 5.7e-17 62.2 0.1 1.9 1 0 0 1 1 1 1 TonB-dependent Receptor Plug Domain PAM2 PF07145.15 EME70252.1 - 3.4 7.6 7.4 0.17 11.6 0.8 2.5 3 0 0 3 3 3 0 Ataxin-2 C-terminal region BNR_2 PF13088.6 EME70253.1 - 1.9e-08 33.9 0.0 3e-05 23.5 0.0 2.8 2 1 0 2 2 2 2 BNR repeat-like domain BNR PF02012.20 EME70253.1 - 0.002 17.9 6.5 1.3 9.3 0.4 3.9 4 0 0 4 4 4 2 BNR/Asp-box repeat TonB_C PF03544.14 EME70254.1 - 1.5e-19 70.2 0.0 4.1e-19 68.8 0.0 1.8 1 0 0 1 1 1 1 Gram-negative bacterial TonB protein C-terminal TonB_2 PF13103.6 EME70254.1 - 0.00016 21.9 0.5 0.00066 19.9 0.0 2.2 2 0 0 2 2 2 1 TonB C terminal MotA_ExbB PF01618.16 EME70255.1 - 4.6e-31 107.2 1.0 7e-31 106.6 1.0 1.4 1 0 0 1 1 1 1 MotA/TolQ/ExbB proton channel family GerA PF03323.13 EME70255.1 - 0.19 10.2 0.1 0.36 9.2 0.1 1.4 1 0 0 1 1 1 0 Bacillus/Clostridium GerA spore germination protein ExbD PF02472.16 EME70256.1 - 5.8e-30 104.1 0.0 7e-30 103.9 0.0 1.0 1 0 0 1 1 1 1 Biopolymer transport protein ExbD/TolR DUF2149 PF09919.9 EME70256.1 - 0.033 14.4 0.0 0.05 13.9 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2149) DHH PF01368.20 EME70256.1 - 0.16 12.3 0.0 0.2 11.9 0.0 1.2 1 0 0 1 1 1 0 DHH family PsbH PF00737.20 EME70256.1 - 0.7 9.7 4.3 1.2 8.9 4.3 1.4 1 0 0 1 1 1 0 Photosystem II 10 kDa phosphoprotein ExbD PF02472.16 EME70257.1 - 4.7e-21 75.3 0.0 6.1e-21 74.9 0.0 1.0 1 0 0 1 1 1 1 Biopolymer transport protein ExbD/TolR TauE PF01925.19 EME70258.1 - 5.3e-45 153.9 48.0 6.3e-45 153.6 48.0 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE TarH PF02203.15 EME70259.1 - 3.5e-28 98.7 1.7 3.5e-28 98.7 1.7 3.0 2 1 1 3 3 3 1 Tar ligand binding domain homologue MCPsignal PF00015.21 EME70259.1 - 2.5e-24 86.0 40.4 2.7e-24 85.9 26.9 2.8 1 1 1 2 2 2 1 Methyl-accepting chemotaxis protein (MCP) signalling domain 4HB_MCP_1 PF12729.7 EME70259.1 - 2.5e-20 72.8 0.0 2.7e-19 69.4 0.0 2.7 2 1 0 3 3 3 1 Four helix bundle sensory module for signal transduction PAS_3 PF08447.12 EME70259.1 - 3e-13 49.9 0.0 6.8e-13 48.7 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 EME70259.1 - 3e-09 37.1 0.0 9.3e-09 35.5 0.0 1.9 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 EME70259.1 - 1.5e-08 34.6 0.0 8.5e-08 32.2 0.0 2.3 1 0 0 1 1 1 1 PAS fold HAMP PF00672.25 EME70259.1 - 5.2e-05 23.5 6.5 0.0042 17.4 0.0 5.5 5 0 0 5 5 5 1 HAMP domain PilZ PF07238.14 EME70259.1 - 0.00026 21.2 0.0 0.0007 19.9 0.0 1.8 1 0 0 1 1 1 1 PilZ domain PAS_4 PF08448.10 EME70259.1 - 0.00032 20.9 4.2 0.00062 20.0 0.0 3.7 4 1 1 5 5 4 1 PAS fold PAS_8 PF13188.7 EME70259.1 - 0.0018 18.3 0.0 0.0048 16.9 0.0 1.8 1 0 0 1 1 1 1 PAS domain T4SS_CagC PF16943.5 EME70259.1 - 0.039 14.1 0.1 0.18 12.0 0.1 2.1 1 0 0 1 1 1 0 Cag pathogenicity island, type IV secretory system DUF948 PF06103.11 EME70259.1 - 0.22 11.8 20.3 0.88 9.9 0.9 5.2 2 1 3 5 5 4 0 Bacterial protein of unknown function (DUF948) GvpG PF05120.12 EME70259.1 - 0.28 11.2 2.8 0.56 10.2 0.6 2.8 3 0 0 3 3 3 0 Gas vesicle protein G GCN5L1 PF06320.13 EME70259.1 - 0.45 10.7 9.8 4 7.6 0.3 3.5 2 1 1 3 3 3 0 GCN5-like protein 1 (GCN5L1) GldM_N PF12081.8 EME70259.1 - 0.63 10.1 5.5 0.76 9.8 0.2 2.8 1 1 0 2 2 2 0 GldM N-terminal domain Spc7 PF08317.11 EME70259.1 - 2 7.2 12.3 15 4.3 8.5 2.4 2 0 0 2 2 2 0 Spc7 kinetochore protein Nup54 PF13874.6 EME70259.1 - 3.1 7.9 17.1 40 4.3 0.0 4.2 2 1 3 5 5 5 0 Nucleoporin complex subunit 54 DUF1664 PF07889.12 EME70259.1 - 3.1 7.8 13.4 5.6 7.0 0.3 4.2 3 2 1 4 4 3 0 Protein of unknown function (DUF1664) Nup88 PF10168.9 EME70259.1 - 5.1 4.8 6.3 1.1 7.0 3.0 1.4 2 0 0 2 2 2 0 Nuclear pore component 7TMR-DISMED2 PF07696.11 EME70260.1 - 1.2e-16 61.0 0.0 2.2e-16 60.1 0.0 1.3 1 0 0 1 1 1 1 7TMR-DISM extracellular 2 7TMR-DISM_7TM PF07695.11 EME70260.1 - 2.8e-15 56.8 9.9 4.1e-15 56.2 9.9 1.2 1 0 0 1 1 1 1 7TM diverse intracellular signalling HATPase_c PF02518.26 EME70260.1 - 4.6e-15 56.1 0.0 9.2e-15 55.1 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 EME70260.1 - 2.5e-06 27.4 0.1 8.2e-06 25.8 0.0 1.9 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.6 EME70260.1 - 0.00023 21.1 0.0 0.00055 19.9 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain Ribosomal_S9 PF00380.19 EME70262.1 - 1.7e-47 160.9 0.1 2.1e-47 160.6 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S9/S16 Ribosomal_L13 PF00572.18 EME70263.1 - 2.7e-50 169.8 0.0 3.2e-50 169.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L13 HATPase_c PF02518.26 EME70264.1 - 1.2e-18 67.6 0.0 2e-18 66.9 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 EME70264.1 - 2.8e-10 40.1 1.2 5.5e-10 39.1 0.2 2.2 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain dCache_1 PF02743.18 EME70264.1 - 1.6e-05 24.8 0.0 2.4e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 Cache domain DUF4131 PF13567.6 EME70264.1 - 0.043 13.5 0.8 2.3 7.8 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) Oberon_cc PF16312.5 EME70264.1 - 0.062 13.2 1.9 0.098 12.6 1.9 1.2 1 0 0 1 1 1 0 Coiled-coil region of Oberon ABC_tran PF00005.27 EME70265.1 - 2.5e-44 151.1 0.0 1.1e-22 81.0 0.0 3.0 3 0 0 3 3 3 2 ABC transporter ABC_tran_Xtn PF12848.7 EME70265.1 - 1.5e-28 98.6 13.7 3.8e-28 97.3 4.3 2.5 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 EME70265.1 - 8e-18 65.3 9.5 2.8e-06 27.3 0.1 4.2 3 1 1 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 EME70265.1 - 9e-09 35.1 3.3 0.00079 18.9 0.0 4.4 4 1 0 4 4 4 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 EME70265.1 - 5.7e-06 26.0 0.2 0.053 13.3 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain ABC_tran_CTD PF16326.5 EME70265.1 - 5e-05 23.5 8.8 5e-05 23.5 8.8 2.9 3 0 0 3 3 2 1 ABC transporter C-terminal domain MMR_HSR1 PF01926.23 EME70265.1 - 0.00015 21.9 0.1 0.15 12.2 0.0 2.7 2 0 0 2 2 2 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 EME70265.1 - 0.00037 20.4 0.0 1.1 9.1 0.0 2.5 2 0 0 2 2 2 2 RsgA GTPase NB-ARC PF00931.22 EME70265.1 - 0.0013 17.9 0.4 0.68 9.1 0.2 2.4 2 0 0 2 2 2 2 NB-ARC domain AAA PF00004.29 EME70265.1 - 0.0014 19.1 3.7 0.13 12.7 0.0 3.2 3 1 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.6 EME70265.1 - 0.0016 18.2 3.4 2.8 7.6 0.0 3.8 4 0 0 4 4 4 1 AAA ATPase domain AAA_28 PF13521.6 EME70265.1 - 0.0023 18.2 0.6 0.77 10.0 0.0 3.7 3 0 0 3 3 3 1 AAA domain AAA_18 PF13238.6 EME70265.1 - 0.0024 18.4 2.4 0.73 10.4 0.0 3.7 4 1 0 4 4 3 1 AAA domain NACHT PF05729.12 EME70265.1 - 0.0028 17.6 0.3 3.2 7.6 0.0 2.7 2 0 0 2 2 2 2 NACHT domain AAA_22 PF13401.6 EME70265.1 - 0.004 17.4 0.3 1.1 9.5 0.0 3.5 4 0 0 4 4 3 1 AAA domain AAA_24 PF13479.6 EME70265.1 - 0.0078 15.9 0.6 3.4 7.3 0.0 2.8 3 0 0 3 3 3 1 AAA domain MobB PF03205.14 EME70265.1 - 0.01 15.7 0.3 0.071 13.0 0.0 2.5 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_5 PF07728.14 EME70265.1 - 0.011 15.7 0.3 6.1 6.8 0.0 2.7 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) SbcCD_C PF13558.6 EME70265.1 - 0.014 15.7 1.2 0.96 9.7 0.1 3.4 2 2 0 2 2 2 0 Putative exonuclease SbcCD, C subunit NTPase_1 PF03266.15 EME70265.1 - 0.015 15.3 0.4 0.53 10.2 0.1 2.7 2 0 0 2 2 2 0 NTPase AAA_25 PF13481.6 EME70265.1 - 0.015 14.9 5.9 1.3 8.6 0.1 3.8 3 1 0 3 3 3 0 AAA domain RNA_helicase PF00910.22 EME70265.1 - 0.016 15.6 0.2 4.6 7.7 0.0 2.4 2 0 0 2 2 2 0 RNA helicase PduV-EutP PF10662.9 EME70265.1 - 0.017 14.8 0.6 6.7 6.5 0.1 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_7 PF12775.7 EME70265.1 - 0.044 13.3 0.3 1.1 8.8 0.0 2.4 3 0 0 3 3 2 0 P-loop containing dynein motor region AAA_30 PF13604.6 EME70265.1 - 0.072 12.8 6.5 0.22 11.2 0.0 3.5 3 2 0 3 3 3 0 AAA domain TsaE PF02367.17 EME70265.1 - 0.08 12.9 1.1 2.6 8.0 0.1 2.4 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_33 PF13671.6 EME70265.1 - 0.091 12.9 6.7 9.4 6.4 0.0 4.5 5 0 0 5 5 5 0 AAA domain Roc PF08477.13 EME70265.1 - 0.2 11.9 0.3 23 5.3 0.1 2.6 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase AAA_23 PF13476.6 EME70265.1 - 0.22 12.0 13.6 0.71 10.3 0.2 3.9 4 0 0 4 4 4 0 AAA domain DUF87 PF01935.17 EME70265.1 - 0.23 11.5 11.5 0.43 10.6 0.0 3.4 4 0 0 4 4 4 0 Helicase HerA, central domain AAA_16 PF13191.6 EME70265.1 - 0.82 10.0 9.8 3.4 8.0 0.2 3.7 4 2 0 4 4 3 0 AAA ATPase domain Thymidylate_kin PF02223.17 EME70265.1 - 1.1 8.9 6.0 13 5.4 0.0 3.3 3 0 0 3 3 3 0 Thymidylate kinase CENP-F_leu_zip PF10473.9 EME70265.1 - 1.2 9.1 8.2 0.52 10.3 3.0 2.2 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 AAA_13 PF13166.6 EME70265.1 - 1.6 7.3 12.3 2.7 6.5 0.0 3.8 4 0 0 4 4 4 0 AAA domain MeaB PF03308.16 EME70265.1 - 5.4 5.9 6.6 2.6 6.9 0.2 2.6 3 0 0 3 3 3 0 Methylmalonyl Co-A mutase-associated GTPase MeaB NDK PF00334.19 EME70266.1 - 3e-53 179.4 0.0 3.4e-53 179.3 0.0 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase HTH_3 PF01381.22 EME70267.1 - 1.8e-13 50.3 0.1 1.3e-12 47.5 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.6 EME70267.1 - 6.9e-10 39.1 1.4 1e-09 38.6 0.4 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_19 PF12844.7 EME70267.1 - 2.8e-07 30.4 0.1 4.9e-07 29.7 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Pou PF00157.17 EME70267.1 - 0.071 13.1 0.1 0.14 12.2 0.1 1.4 1 0 0 1 1 1 0 Pou domain - N-terminal to homeobox domain DUF4228 PF14009.6 EME70267.1 - 0.076 13.4 0.0 0.098 13.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4228) GGDEF PF00990.21 EME70268.1 - 1e-45 155.4 0.0 1.8e-45 154.6 0.0 1.4 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain dCache_1 PF02743.18 EME70268.1 - 2.2e-14 53.8 0.0 3.4e-14 53.2 0.0 1.2 1 0 0 1 1 1 1 Cache domain sCache_3_2 PF17203.4 EME70268.1 - 0.011 15.9 0.0 0.023 14.8 0.0 1.5 1 0 0 1 1 1 0 Single cache domain 3 HATPase_c PF02518.26 EME70269.1 - 5.2e-25 88.1 0.0 9.8e-25 87.3 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dCache_1 PF02743.18 EME70269.1 - 1.4e-16 61.1 0.0 3e-16 60.0 0.0 1.6 2 0 0 2 2 2 1 Cache domain HisKA PF00512.25 EME70269.1 - 2.4e-11 43.5 0.5 8.5e-11 41.7 0.2 2.1 1 1 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.10 EME70269.1 - 2.7e-09 37.3 6.2 9.6e-09 35.5 0.8 3.7 4 0 0 4 4 4 1 PAS fold PAS_3 PF08447.12 EME70269.1 - 2.3e-08 34.2 0.0 7e-08 32.6 0.0 1.9 1 0 0 1 1 1 1 PAS fold PAS PF00989.25 EME70269.1 - 4.3e-08 33.1 0.1 1.3e-07 31.6 0.1 1.9 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 EME70269.1 - 8.7e-06 25.9 0.0 2.2e-05 24.7 0.0 1.7 1 0 0 1 1 1 1 PAS domain HATPase_c_5 PF14501.6 EME70269.1 - 0.00084 19.2 0.0 0.0016 18.3 0.0 1.4 1 0 0 1 1 1 1 GHKL domain PAS_8 PF13188.7 EME70269.1 - 0.027 14.5 0.1 0.091 12.8 0.1 2.0 1 0 0 1 1 1 0 PAS domain HATPase_c_2 PF13581.6 EME70269.1 - 0.039 13.9 0.1 0.38 10.7 0.0 2.4 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain Big_6 PF17936.1 EME70269.1 - 0.057 13.7 0.1 0.14 12.4 0.1 1.7 1 0 0 1 1 1 0 Bacterial Ig domain BPD_transp_1 PF00528.22 EME70270.1 - 5.7e-12 45.8 7.4 5.7e-12 45.8 7.4 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF2273 PF10031.9 EME70270.1 - 0.11 12.5 0.0 0.11 12.5 0.0 3.4 3 1 1 4 4 4 0 Small integral membrane protein (DUF2273) BPD_transp_1 PF00528.22 EME70271.1 - 3.1e-25 89.0 9.4 3.1e-25 89.0 9.4 1.7 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_11 PF13531.6 EME70272.1 - 1.2e-41 143.0 1.8 1.6e-41 142.6 1.8 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 EME70272.1 - 6.5e-11 42.1 0.2 1.9e-10 40.6 0.2 1.7 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 EME70272.1 - 1.2e-10 41.9 6.0 1.6e-10 41.5 4.8 1.6 1 1 1 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 EME70272.1 - 9e-06 25.7 0.3 1.1e-05 25.4 0.3 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like_2 PF12849.7 EME70272.1 - 0.00028 20.6 0.8 0.00066 19.4 0.8 1.7 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.7 EME70272.1 - 0.00032 19.9 0.1 0.00063 18.9 0.1 1.6 1 1 0 1 1 1 1 PBP superfamily domain RNase_T PF00929.24 EME70273.1 - 2.1e-07 31.7 0.0 2.8e-07 31.2 0.0 1.2 1 0 0 1 1 1 1 Exonuclease DUF5051 PF16473.5 EME70273.1 - 0.11 12.4 0.0 0.14 12.1 0.0 1.2 1 0 0 1 1 1 0 3' exoribonuclease, RNase T-like DUF2527 PF10736.9 EME70274.1 - 0.015 15.1 0.0 0.023 14.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2627) ATP-cone PF03477.16 EME70275.1 - 4.8e-19 68.7 0.2 6.1e-19 68.4 0.2 1.1 1 0 0 1 1 1 1 ATP cone domain zf-ISL3 PF14690.6 EME70275.1 - 0.00075 20.1 1.8 0.88 10.3 0.1 2.5 2 0 0 2 2 2 2 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 TF_Zn_Ribbon PF08271.12 EME70275.1 - 0.0012 18.3 1.6 0.71 9.4 0.3 2.5 2 0 0 2 2 2 2 TFIIB zinc-binding Lar_restr_allev PF14354.6 EME70275.1 - 0.0099 16.2 2.1 0.085 13.2 2.3 2.0 1 1 1 2 2 2 1 Restriction alleviation protein Lar TFIIS_C PF01096.18 EME70275.1 - 0.015 15.1 1.1 0.16 11.9 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-ribbon_3 PF13248.6 EME70275.1 - 0.033 13.6 0.9 5 6.7 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 EME70275.1 - 0.61 10.2 4.1 5.4 7.2 4.2 2.2 1 1 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_9 PF14369.6 EME70275.1 - 0.72 10.2 2.9 2.4 8.5 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon Zn_Tnp_IS1595 PF12760.7 EME70275.1 - 0.83 9.7 5.4 7.5 6.6 0.7 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain DUF35_N PF12172.8 EME70275.1 - 1 9.3 5.7 2.1 8.3 0.8 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-Di19 PF05605.12 EME70275.1 - 1.5 9.1 2.7 15 6.0 2.8 2.1 1 1 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding Bac_DNA_binding PF00216.21 EME70276.1 - 9.7e-32 109.0 0.0 1.1e-31 108.9 0.0 1.0 1 0 0 1 1 1 1 Bacterial DNA-binding protein HU-HIG PF18291.1 EME70276.1 - 1.2e-05 25.4 0.0 1.3e-05 25.2 0.0 1.2 1 1 0 1 1 1 1 HU domain fused to wHTH, Ig, or Glycine-rich motif HU-CCDC81_euk_2 PF18289.1 EME70276.1 - 0.012 15.8 0.0 0.017 15.2 0.0 1.2 1 0 0 1 1 1 0 CCDC81 eukaryotic HU domain 2 ROS_MUCR PF05443.11 EME70277.1 - 1.4e-43 147.9 0.0 1.6e-43 147.7 0.0 1.0 1 0 0 1 1 1 1 ROS/MUCR transcriptional regulator protein HTH_3 PF01381.22 EME70278.1 - 6.1e-10 39.0 0.1 1.6e-09 37.6 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.6 EME70278.1 - 7.5e-07 29.4 3.6 9e-07 29.2 2.4 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_19 PF12844.7 EME70278.1 - 0.00074 19.5 0.0 0.0012 18.9 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 EME70278.1 - 0.018 15.5 0.0 0.026 14.9 0.0 1.3 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain EF-G-binding_N PF07299.11 EME70278.1 - 0.15 12.6 0.0 0.26 11.9 0.0 1.3 1 0 0 1 1 1 0 Elongation factor G-binding protein, N-terminal HTH_20 PF12840.7 EME70279.1 - 6.4e-06 26.1 0.2 9.3e-06 25.6 0.2 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 EME70279.1 - 9.1e-05 22.3 0.1 0.00013 21.8 0.1 1.2 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 EME70279.1 - 0.00011 22.0 0.0 0.00016 21.5 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 EME70279.1 - 0.0002 21.2 0.0 0.00028 20.7 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.22 EME70279.1 - 0.00028 20.7 0.0 0.00042 20.2 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 EME70279.1 - 0.00053 19.9 0.0 0.0009 19.1 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_27 PF13463.6 EME70279.1 - 0.0019 18.7 0.0 0.0035 17.8 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.6 EME70279.1 - 0.0028 17.2 0.0 0.008 15.7 0.0 1.8 1 1 1 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_38 PF13936.6 EME70279.1 - 0.0031 17.2 0.4 4.8 7.0 0.0 2.8 3 0 0 3 3 3 2 Helix-turn-helix domain HTH_28 PF13518.6 EME70279.1 - 0.012 15.7 0.8 0.091 12.9 0.1 2.4 2 1 1 3 3 3 0 Helix-turn-helix domain HMG_box PF00505.19 EME70279.1 - 0.016 15.6 0.0 0.038 14.4 0.0 1.6 2 0 0 2 2 2 0 HMG (high mobility group) box HTH_AsnC-type PF13404.6 EME70279.1 - 0.031 14.1 0.1 0.11 12.3 0.0 2.0 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HemN_C PF06969.16 EME70279.1 - 0.081 13.0 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 HemN C-terminal domain E2F_TDP PF02319.20 EME70279.1 - 0.11 12.6 0.0 0.16 12.0 0.0 1.3 1 0 0 1 1 1 0 E2F/DP family winged-helix DNA-binding domain HTH_18 PF12833.7 EME70279.1 - 0.11 12.7 0.3 0.69 10.2 0.1 2.0 1 1 1 2 2 2 0 Helix-turn-helix domain 2-oxoacid_dh PF00198.23 EME70280.1 - 0.14 11.6 0.1 0.2 11.1 0.1 1.1 1 0 0 1 1 1 0 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Phage_integrase PF00589.22 EME70281.1 - 4.2e-12 46.2 0.1 4.9e-12 46.0 0.1 1.1 1 0 0 1 1 1 1 Phage integrase family DprA_WH PF17782.1 EME70282.1 - 0.00015 21.8 0.1 0.00016 21.8 0.1 1.1 1 0 0 1 1 1 1 DprA winged helix domain Topoisom_bac PF01131.20 EME70283.1 - 9.1e-120 400.4 0.0 1.1e-119 400.1 0.0 1.1 1 0 0 1 1 1 1 DNA topoisomerase Toprim_C_rpt PF13368.6 EME70283.1 - 1.9e-46 155.8 3.3 7.2e-17 61.1 0.0 4.6 4 0 0 4 4 4 3 Topoisomerase C-terminal repeat Toprim PF01751.22 EME70283.1 - 9.2e-25 86.9 0.0 2.1e-24 85.7 0.0 1.6 1 0 0 1 1 1 1 Toprim domain zf-C4_Topoisom PF01396.19 EME70283.1 - 6e-14 51.5 1.7 1.6e-13 50.2 1.4 1.8 2 0 0 2 2 2 1 Topoisomerase DNA binding C4 zinc finger Flagellin_N PF00669.20 EME70284.1 - 7.2e-13 48.8 10.9 7.2e-13 48.8 10.9 2.8 2 1 1 3 3 3 1 Bacterial flagellin N-terminal helical region Flagellin_C PF00700.21 EME70284.1 - 4.1e-06 27.1 2.1 4.1e-06 27.1 2.1 2.8 3 0 0 3 3 3 1 Bacterial flagellin C-terminal helical region DUF4156 PF13698.6 EME70284.1 - 0.055 13.8 0.4 0.17 12.3 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4156) MAF_flag10 PF01973.18 EME70285.1 - 1.5e-35 122.4 0.0 2.6e-35 121.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function DUF115 Glyco_transf_41 PF13844.6 EME70286.1 - 2.3e-10 39.5 0.0 1.1e-09 37.3 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferase family 41 TPR_16 PF13432.6 EME70286.1 - 9.6e-07 29.4 8.7 0.00014 22.4 2.5 3.1 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_2 PF07719.17 EME70286.1 - 1.6e-05 24.6 0.4 0.081 13.1 0.0 3.6 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_19 PF14559.6 EME70286.1 - 5.5e-05 23.6 11.2 0.01 16.3 2.4 4.4 2 1 3 5 5 5 3 Tetratricopeptide repeat TPR_14 PF13428.6 EME70286.1 - 0.00019 22.0 17.4 0.025 15.4 1.0 4.7 4 2 1 5 5 5 3 Tetratricopeptide repeat ANAPC3 PF12895.7 EME70286.1 - 0.0011 19.1 0.3 0.0026 17.9 0.3 1.6 1 0 0 1 1 1 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_1 PF00515.28 EME70286.1 - 0.03 14.1 0.4 5.1 7.1 0.1 2.9 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_4 PF07721.14 EME70286.1 - 0.14 12.8 0.3 0.14 12.8 0.3 5.2 5 0 0 5 5 5 0 Tetratricopeptide repeat TPR_12 PF13424.6 EME70286.1 - 0.21 11.9 9.1 0.55 10.6 2.5 4.0 4 1 0 4 4 4 0 Tetratricopeptide repeat TPR_9 PF13371.6 EME70286.1 - 5.7 7.2 15.2 0.13 12.4 3.4 3.2 2 1 1 3 3 3 0 Tetratricopeptide repeat TPR_16 PF13432.6 EME70287.1 - 1.8e-06 28.5 5.1 1.8e-06 28.5 5.1 2.5 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_19 PF14559.6 EME70287.1 - 3.8e-05 24.1 2.1 9.8e-05 22.8 2.1 1.7 1 0 0 1 1 1 1 Tetratricopeptide repeat Glyco_transf_9 PF01075.17 EME70287.1 - 7.7e-05 22.1 0.0 0.00011 21.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase family 9 (heptosyltransferase) TPR_11 PF13414.6 EME70287.1 - 9.7e-05 22.0 0.2 0.0002 21.0 0.2 1.5 1 0 0 1 1 1 1 TPR repeat TPR_14 PF13428.6 EME70287.1 - 0.0019 18.9 3.5 0.0019 18.9 3.5 3.0 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_9 PF13371.6 EME70287.1 - 0.1 12.8 2.3 0.26 11.4 2.3 1.7 1 0 0 1 1 1 0 Tetratricopeptide repeat TPR_7 PF13176.6 EME70287.1 - 0.11 12.5 1.4 0.66 10.1 0.3 2.2 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_2 PF07719.17 EME70287.1 - 0.63 10.3 4.8 4.3 7.7 2.2 2.4 2 0 0 2 2 2 0 Tetratricopeptide repeat FlaF PF07309.11 EME70288.1 - 7e-17 61.5 0.0 8.4e-17 61.2 0.0 1.1 1 0 0 1 1 1 1 Flagellar protein FlaF DUF2389 PF09493.10 EME70288.1 - 0.092 13.4 0.0 0.14 12.8 0.0 1.2 1 0 0 1 1 1 0 Tryptophan-rich protein (DUF2389) DUF16 PF01519.16 EME70289.1 - 0.019 15.5 9.4 0.54 10.8 0.2 2.6 2 1 0 2 2 2 0 Protein of unknown function DUF16 DUF1664 PF07889.12 EME70289.1 - 0.019 15.0 5.6 2.8 8.0 0.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) DUF1192 PF06698.11 EME70289.1 - 0.13 12.3 1.4 1.1 9.4 0.0 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF1192) Apolipoprotein PF01442.18 EME70289.1 - 0.13 12.1 11.9 0.22 11.4 4.6 2.4 2 0 0 2 2 2 0 Apolipoprotein A1/A4/E domain DUF2418 PF10332.9 EME70289.1 - 0.25 11.9 0.7 4.4 7.9 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2418) Baculo_PEP_C PF04513.12 EME70289.1 - 0.32 11.0 11.4 0.23 11.5 1.3 3.2 2 1 1 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus UPF0242 PF06785.11 EME70289.1 - 0.39 10.8 12.4 0.7 10.0 2.7 2.1 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus Tweety PF04906.13 EME70289.1 - 1.2 7.8 4.9 1.5 7.4 0.7 2.1 2 0 0 2 2 2 0 Tweety SKA2 PF16740.5 EME70289.1 - 1.4 8.7 9.7 0.34 10.7 3.7 2.4 2 1 0 2 2 2 0 Spindle and kinetochore-associated protein 2 YtxH PF12732.7 EME70289.1 - 1.5 9.4 3.8 2 9.0 0.7 2.3 2 0 0 2 2 2 0 YtxH-like protein Allexi_40kDa PF05549.11 EME70289.1 - 1.7 8.1 5.1 1.2 8.6 1.0 2.0 2 0 0 2 2 2 0 Allexivirus 40kDa protein Fib_alpha PF08702.10 EME70289.1 - 5.2 7.2 9.4 11 6.2 0.2 2.6 2 1 0 2 2 2 0 Fibrinogen alpha/beta chain family FlaF PF07309.11 EME70290.1 - 7.5e-15 54.9 0.1 1e-14 54.5 0.1 1.2 1 0 0 1 1 1 1 Flagellar protein FlaF PucR PF07905.11 EME70291.1 - 0.054 13.8 0.0 0.2 11.9 0.0 1.9 2 0 0 2 2 2 0 Purine catabolism regulatory protein-like family TPR_2 PF07719.17 EME70292.1 - 8.6e-19 66.1 12.3 6.2e-06 25.9 0.1 7.0 7 0 0 7 7 7 4 Tetratricopeptide repeat TPR_16 PF13432.6 EME70292.1 - 2.3e-16 60.1 47.9 1.8e-07 31.7 3.6 6.0 5 1 1 6 6 5 4 Tetratricopeptide repeat TPR_1 PF00515.28 EME70292.1 - 8.9e-16 57.0 5.5 9.5e-05 22.1 0.0 6.4 7 0 0 7 7 6 3 Tetratricopeptide repeat TPR_19 PF14559.6 EME70292.1 - 2.9e-15 56.5 24.1 0.00016 22.1 3.8 5.6 5 1 1 6 6 5 3 Tetratricopeptide repeat TPR_12 PF13424.6 EME70292.1 - 3.1e-14 53.0 26.1 6.8e-07 29.5 2.4 5.7 3 1 3 6 6 5 4 Tetratricopeptide repeat TPR_14 PF13428.6 EME70292.1 - 1.1e-12 47.7 47.1 1.8e-05 25.1 1.3 8.2 5 1 4 9 9 7 5 Tetratricopeptide repeat TPR_8 PF13181.6 EME70292.1 - 3.3e-12 45.6 0.0 0.005 16.9 0.0 6.0 7 0 0 7 7 6 2 Tetratricopeptide repeat Methyltransf_25 PF13649.6 EME70292.1 - 7.6e-12 45.8 0.2 2.2e-11 44.3 0.2 1.9 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 EME70292.1 - 2.4e-11 44.1 0.1 6.1e-11 42.8 0.1 1.8 1 0 0 1 1 1 1 Methyltransferase domain TPR_17 PF13431.6 EME70292.1 - 1.3e-09 37.8 4.5 0.11 12.9 0.0 5.6 5 0 0 5 5 5 2 Tetratricopeptide repeat Methyltransf_23 PF13489.6 EME70292.1 - 8e-09 35.5 0.0 1.7e-08 34.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 EME70292.1 - 3.8e-08 34.0 0.0 9.5e-08 32.7 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain TPR_15 PF13429.6 EME70292.1 - 2.8e-07 30.0 2.9 2.2e-06 27.1 1.0 2.2 1 1 1 2 2 2 1 Tetratricopeptide repeat Methyltransf_31 PF13847.6 EME70292.1 - 5.5e-07 29.5 0.0 1e-06 28.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain TPR_7 PF13176.6 EME70292.1 - 8.8e-07 28.5 11.1 0.032 14.2 0.1 5.9 6 0 0 6 6 5 1 Tetratricopeptide repeat TPR_9 PF13371.6 EME70292.1 - 1.5e-06 28.3 19.2 0.00075 19.6 0.9 4.7 3 1 1 4 4 4 2 Tetratricopeptide repeat TPR_10 PF13374.6 EME70292.1 - 6.4e-06 25.9 36.2 0.0012 18.7 2.1 6.6 7 0 0 7 7 7 3 Tetratricopeptide repeat TPR_11 PF13414.6 EME70292.1 - 1.2e-05 24.9 4.9 1 9.1 0.1 4.5 3 1 1 4 4 4 3 TPR repeat TPR_21 PF09976.9 EME70292.1 - 3.8e-05 23.5 7.6 0.48 10.1 0.1 3.4 2 1 1 3 3 3 3 Tetratricopeptide repeat-like domain TPR_6 PF13174.6 EME70292.1 - 6.3e-05 23.4 15.1 0.00058 20.3 0.1 6.6 8 0 0 8 8 6 1 Tetratricopeptide repeat Wzy_C_2 PF11846.8 EME70292.1 - 0.0001 22.3 4.1 0.097 12.6 0.2 3.4 3 1 1 4 4 4 2 Virulence factor membrane-bound polymerase, C-terminal BTAD PF03704.17 EME70292.1 - 0.00026 21.4 4.5 0.00026 21.4 4.5 3.7 2 2 1 3 3 3 1 Bacterial transcriptional activator domain TPR_4 PF07721.14 EME70292.1 - 0.00032 21.1 22.7 0.013 16.1 3.6 8.5 9 0 0 9 9 6 3 Tetratricopeptide repeat ANAPC3 PF12895.7 EME70292.1 - 0.0034 17.6 0.1 4 7.7 0.0 2.7 2 0 0 2 2 2 1 Anaphase-promoting complex, cyclosome, subunit 3 N6_N4_Mtase PF01555.18 EME70292.1 - 0.011 15.5 0.0 0.033 13.9 0.0 1.7 2 0 0 2 2 2 0 DNA methylase TPR_MalT PF17874.1 EME70292.1 - 0.014 14.8 5.6 0.035 13.5 2.5 2.9 1 1 2 3 3 3 0 MalT-like TPR region NARP1 PF12569.8 EME70292.1 - 0.11 11.4 0.0 2.2 7.1 0.0 2.0 2 0 0 2 2 2 0 NMDA receptor-regulated protein 1 MTS PF05175.14 EME70292.1 - 0.17 11.4 0.2 2.3 7.7 0.1 2.2 2 0 0 2 2 2 0 Methyltransferase small domain PrmA PF06325.13 EME70292.1 - 0.25 10.7 0.2 0.36 10.2 0.2 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Aminotran_1_2 PF00155.21 EME70293.1 - 1.5e-53 182.3 0.0 1.9e-53 182.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 EME70293.1 - 0.00018 20.2 0.0 0.00025 19.7 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 EME70293.1 - 0.00026 20.4 0.0 0.00042 19.7 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 EME70293.1 - 0.0014 17.7 0.0 0.0021 17.1 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V P-II PF00543.22 EME70294.1 - 1.1e-42 144.8 1.0 1.2e-42 144.6 1.0 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II DUF3240 PF11582.8 EME70294.1 - 0.0087 16.2 0.1 0.012 15.8 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3240) VbhA PF18495.1 EME70294.1 - 0.027 14.3 0.8 0.3 11.0 0.0 2.4 2 1 0 2 2 2 0 Antitoxin VbhA DUF2344 PF10105.9 EME70294.1 - 0.14 12.0 0.0 0.16 11.8 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2344) Gln-synt_C PF00120.24 EME70295.1 - 6.5e-138 459.4 0.0 7.7e-138 459.2 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 EME70295.1 - 2.1e-29 101.0 0.2 4e-29 100.2 0.2 1.5 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain BPL_LplA_LipB PF03099.19 EME70296.1 - 3.3e-09 36.7 0.0 4.7e-09 36.2 0.0 1.2 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family PTA_PTB PF01515.19 EME70297.1 - 1.1e-90 304.3 0.0 1.8e-90 303.5 0.0 1.4 1 0 0 1 1 1 1 Phosphate acetyl/butaryl transferase malic PF00390.19 EME70297.1 - 5.2e-26 91.5 0.5 3.9e-23 82.2 0.5 2.7 1 1 0 1 1 1 1 Malic enzyme, N-terminal domain Malic_M PF03949.15 EME70297.1 - 3.1e-23 82.4 1.3 9.5e-23 80.8 1.3 1.7 1 1 0 1 1 1 1 Malic enzyme, NAD binding domain AlaDh_PNT_C PF01262.21 EME70297.1 - 0.021 14.1 2.5 0.042 13.1 2.5 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Malate_DH PF12434.8 EME70297.1 - 0.039 14.0 0.3 0.095 12.7 0.3 1.7 1 0 0 1 1 1 0 Malate dehydrogenase enzyme CTP_transf_3 PF02348.19 EME70298.1 - 4.2e-19 69.3 0.0 5.1e-19 69.1 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase NTP_transf_3 PF12804.7 EME70298.1 - 5.4e-06 26.9 0.8 5.4e-06 26.9 0.8 1.5 2 0 0 2 2 2 1 MobA-like NTP transferase domain LAL_C2 PF18603.1 EME70298.1 - 0.0056 16.8 1.0 0.013 15.6 1.0 1.6 1 0 0 1 1 1 1 L-amino acid ligase C-terminal domain 2 DUF2064 PF09837.9 EME70298.1 - 0.045 13.6 0.1 0.077 12.8 0.1 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2064) DUF3304 PF11745.8 EME70298.1 - 0.12 12.7 0.0 0.19 12.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3304) DegT_DnrJ_EryC1 PF01041.17 EME70299.1 - 7e-109 364.4 0.0 8e-109 364.2 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.21 EME70299.1 - 1.3e-11 44.3 0.0 8.2e-11 41.7 0.0 2.0 2 0 0 2 2 2 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 EME70299.1 - 6.3e-08 32.2 0.6 1e-07 31.5 0.6 1.3 1 1 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 EME70299.1 - 7.5e-05 21.4 0.0 0.00011 20.8 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 EME70299.1 - 0.002 17.1 0.0 0.0029 16.6 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V PSP PF04046.16 EME70299.1 - 0.073 12.9 1.7 0.13 12.2 0.1 2.2 3 0 0 3 3 3 0 PSP Polysacc_synt_2 PF02719.15 EME70300.1 - 1.9e-100 335.8 0.0 2.1e-100 335.6 0.0 1.0 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein Epimerase PF01370.21 EME70300.1 - 1.6e-22 80.2 0.0 1.3e-21 77.1 0.0 2.0 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 EME70300.1 - 1.5e-14 54.2 0.0 7e-13 48.7 0.0 2.1 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 EME70300.1 - 8.6e-14 51.2 0.0 2.6e-13 49.6 0.0 1.6 1 1 1 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 EME70300.1 - 4.9e-11 42.3 0.0 1.6e-09 37.3 0.0 2.2 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.6 EME70300.1 - 7.4e-09 35.7 0.0 1.3e-08 35.0 0.0 1.4 1 0 0 1 1 1 1 NAD(P)H-binding adh_short PF00106.25 EME70300.1 - 9.3e-08 31.8 0.0 1.4e-07 31.2 0.0 1.2 1 0 0 1 1 1 1 short chain dehydrogenase NAD_binding_4 PF07993.12 EME70300.1 - 7.9e-07 28.5 1.4 0.00023 20.4 0.9 2.9 1 1 1 2 2 2 2 Male sterility protein NmrA PF05368.13 EME70300.1 - 6.3e-06 25.9 0.0 9.8e-06 25.3 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family KR PF08659.10 EME70300.1 - 0.00024 21.0 0.0 0.00041 20.3 0.0 1.4 1 0 0 1 1 1 1 KR domain HutP PF09021.11 EME70300.1 - 0.016 15.5 0.2 0.03 14.6 0.2 1.4 1 0 0 1 1 1 0 HutP Sacchrp_dh_NADP PF03435.18 EME70300.1 - 0.053 13.8 0.0 0.18 12.1 0.0 1.9 3 0 0 3 3 3 0 Saccharopine dehydrogenase NADP binding domain Acetyltransf_3 PF13302.7 EME70301.1 - 2.1e-17 64.1 0.0 2.5e-17 63.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 EME70301.1 - 2e-07 31.3 0.0 2.4e-07 31.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_8 PF13523.6 EME70301.1 - 3.1e-05 23.7 0.1 9.9e-05 22.0 0.1 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 EME70301.1 - 0.0004 20.3 0.0 0.00064 19.7 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_7 PF13508.7 EME70301.1 - 0.0006 20.2 0.0 0.0009 19.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 EME70301.1 - 0.077 12.9 0.0 0.1 12.6 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Glyco_tran_28_C PF04101.16 EME70302.1 - 0.0092 16.0 0.0 0.014 15.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase family 28 C-terminal domain DUF354 PF04007.12 EME70302.1 - 0.018 14.1 0.1 0.024 13.7 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF354) NeuB PF03102.14 EME70303.1 - 2.7e-87 292.2 0.0 3.2e-87 292.0 0.0 1.0 1 0 0 1 1 1 1 NeuB family SAF PF08666.12 EME70303.1 - 6.9e-10 39.4 0.0 3.5e-09 37.2 0.0 2.1 2 0 0 2 2 2 1 SAF domain MscS_TM PF12794.7 EME70303.1 - 0.16 10.8 0.0 0.23 10.3 0.0 1.1 1 0 0 1 1 1 0 Mechanosensitive ion channel inner membrane domain 1 EFG_IV PF03764.18 EME70305.1 - 4.8e-42 142.6 0.0 8.9e-42 141.7 0.0 1.5 1 0 0 1 1 1 1 Elongation factor G, domain IV GTP_EFTU PF00009.27 EME70305.1 - 2.3e-26 92.5 0.0 3.7e-26 91.9 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_C PF00679.24 EME70305.1 - 7.4e-20 70.8 0.0 1.6e-19 69.7 0.0 1.6 1 0 0 1 1 1 1 Elongation factor G C-terminus EFG_II PF14492.6 EME70305.1 - 3.6e-15 55.8 0.0 7.9e-15 54.7 0.0 1.5 1 0 0 1 1 1 1 Elongation Factor G, domain II MMR_HSR1 PF01926.23 EME70305.1 - 0.00059 19.9 0.0 0.0012 18.9 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase ATP_bind_1 PF03029.17 EME70305.1 - 0.014 15.2 0.1 2.1 8.0 0.0 2.4 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein SRPRB PF09439.10 EME70305.1 - 0.031 13.7 0.0 0.065 12.7 0.0 1.5 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit AAA_23 PF13476.6 EME70305.1 - 0.056 13.9 0.0 0.098 13.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_21 PF13304.6 EME70305.1 - 0.09 12.6 0.0 0.15 11.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 EME70305.1 - 0.22 10.9 0.0 0.38 10.2 0.0 1.2 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain ECH_1 PF00378.20 EME70306.1 - 5.6e-47 160.2 0.5 6.2e-47 160.0 0.5 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 EME70306.1 - 6.9e-32 111.3 0.8 1.2e-31 110.5 0.8 1.4 1 1 0 1 1 1 1 Enoyl-CoA hydratase/isomerase CoA_transf_3 PF02515.17 EME70307.1 - 5.4e-102 341.7 0.0 6.5e-102 341.4 0.0 1.0 1 0 0 1 1 1 1 CoA-transferase family III TPR_2 PF07719.17 EME70308.1 - 9.3e-45 147.2 25.2 4.6e-08 32.6 0.1 12.6 13 0 0 13 13 12 8 Tetratricopeptide repeat TPR_1 PF00515.28 EME70308.1 - 1.5e-44 148.0 4.7 1e-08 34.6 0.1 11.5 12 0 0 12 12 12 7 Tetratricopeptide repeat TPR_11 PF13414.6 EME70308.1 - 1.2e-40 136.9 7.5 1e-08 34.7 0.0 10.5 7 3 4 11 11 11 8 TPR repeat TPR_19 PF14559.6 EME70308.1 - 2.2e-37 127.4 30.6 2.4e-06 27.9 0.2 6.8 5 1 2 7 7 7 7 Tetratricopeptide repeat TPR_16 PF13432.6 EME70308.1 - 5.6e-35 119.7 98.1 1.3e-08 35.4 0.4 8.8 1 1 8 11 11 11 10 Tetratricopeptide repeat TPR_12 PF13424.6 EME70308.1 - 1e-31 109.0 37.2 4.1e-06 27.0 1.7 8.2 4 3 3 7 7 7 6 Tetratricopeptide repeat TPR_8 PF13181.6 EME70308.1 - 1.2e-31 106.2 0.0 3.6e-05 23.6 0.0 11.1 11 0 0 11 11 11 6 Tetratricopeptide repeat TPR_17 PF13431.6 EME70308.1 - 1.2e-30 103.6 3.5 7e-06 26.1 0.1 10.8 11 0 0 11 11 11 5 Tetratricopeptide repeat TPR_14 PF13428.6 EME70308.1 - 1e-28 97.5 57.7 0.00033 21.2 1.3 12.6 2 2 11 13 13 12 9 Tetratricopeptide repeat TPR_7 PF13176.6 EME70308.1 - 1.4e-21 74.9 24.9 0.00029 20.7 0.0 11.0 10 3 2 12 12 11 7 Tetratricopeptide repeat TPR_10 PF13374.6 EME70308.1 - 5.9e-18 64.1 58.3 0.0038 17.1 1.2 12.2 12 0 0 12 12 12 6 Tetratricopeptide repeat ANAPC3 PF12895.7 EME70308.1 - 2.1e-13 50.3 0.3 0.0055 16.9 0.0 5.2 3 1 2 5 5 5 4 Anaphase-promoting complex, cyclosome, subunit 3 TPR_4 PF07721.14 EME70308.1 - 2.3e-13 49.4 54.3 0.013 16.1 0.3 11.9 11 0 0 11 11 11 6 Tetratricopeptide repeat TPR_6 PF13174.6 EME70308.1 - 8e-11 41.9 28.0 4.6 8.1 0.2 10.9 12 0 0 12 12 10 4 Tetratricopeptide repeat TPR_9 PF13371.6 EME70308.1 - 4.1e-10 39.7 41.1 0.0097 16.0 1.3 6.2 3 2 2 6 6 6 4 Tetratricopeptide repeat NARP1 PF12569.8 EME70308.1 - 2.2e-07 30.2 0.8 0.025 13.5 0.0 4.8 2 1 2 5 5 5 1 NMDA receptor-regulated protein 1 TPR_MalT PF17874.1 EME70308.1 - 3.6e-07 29.9 16.2 0.19 11.1 0.1 5.5 2 1 1 5 5 5 3 MalT-like TPR region Glyco_transf_9 PF01075.17 EME70308.1 - 6.2e-07 29.0 0.4 1.2e-06 28.0 0.4 1.4 1 0 0 1 1 1 1 Glycosyltransferase family 9 (heptosyltransferase) TPR_15 PF13429.6 EME70308.1 - 7.6e-05 22.1 16.0 0.0027 17.0 5.4 3.4 2 1 0 3 3 3 2 Tetratricopeptide repeat BTAD PF03704.17 EME70308.1 - 0.00019 21.9 8.2 0.00019 21.9 8.2 5.8 2 1 2 5 5 4 1 Bacterial transcriptional activator domain TPR_3 PF07720.12 EME70308.1 - 0.0013 18.7 0.3 22 5.2 0.0 4.7 5 0 0 5 5 4 0 Tetratricopeptide repeat PPR PF01535.20 EME70308.1 - 0.0038 17.4 2.4 1.6e+02 2.9 0.0 6.5 9 0 0 9 9 7 0 PPR repeat SNAP PF14938.6 EME70308.1 - 0.017 14.5 1.8 0.24 10.8 0.1 2.8 2 1 1 3 3 3 0 Soluble NSF attachment protein, SNAP TPR_20 PF14561.6 EME70308.1 - 8.8 6.7 21.7 20 5.6 0.8 6.9 4 3 4 9 9 8 0 Tetratricopeptide repeat AsnC_trans_reg PF01037.21 EME70309.1 - 4.5e-19 68.2 0.0 7e-19 67.6 0.0 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 EME70309.1 - 2.5e-18 65.3 0.0 3.6e-18 64.8 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 EME70309.1 - 2e-15 56.3 0.0 3e-15 55.8 0.0 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_20 PF12840.7 EME70309.1 - 9.9e-05 22.3 0.0 0.00024 21.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 EME70309.1 - 0.00012 22.0 0.1 0.00021 21.2 0.1 1.4 1 0 0 1 1 1 1 HTH domain HTH_Crp_2 PF13545.6 EME70309.1 - 0.0082 16.1 0.1 0.015 15.3 0.1 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR PF01047.22 EME70309.1 - 0.0093 15.9 0.0 0.014 15.3 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 EME70309.1 - 0.012 15.4 0.1 0.025 14.4 0.1 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain MarR_2 PF12802.7 EME70309.1 - 0.024 14.5 0.1 0.036 14.0 0.1 1.3 1 0 0 1 1 1 0 MarR family HTH_DeoR PF08220.12 EME70309.1 - 0.034 13.9 0.0 0.055 13.2 0.0 1.3 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_5 PF01022.20 EME70309.1 - 0.16 11.9 0.1 0.92 9.4 0.1 2.0 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family POR PF01558.18 EME70310.1 - 1.5e-23 83.7 0.8 2.8e-23 82.9 0.8 1.4 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.21 EME70310.1 - 1.3e-05 25.1 3.8 3.1e-05 23.8 3.8 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Fer4_6 PF12837.7 EME70310.1 - 3.3 8.0 10.3 1.5 9.0 3.6 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain HSP70 PF00012.20 EME70311.1 - 1.4e-19 69.8 0.1 3.5e-08 32.1 0.0 3.0 3 0 0 3 3 3 3 Hsp70 protein MreB_Mbl PF06723.13 EME70311.1 - 2.8e-07 29.7 0.2 0.00027 19.9 0.0 2.7 3 0 0 3 3 3 2 MreB/Mbl protein Autotransporter PF03797.19 EME70313.1 - 6.7e-26 91.5 7.8 9.1e-26 91.0 7.8 1.1 1 0 0 1 1 1 1 Autotransporter beta-domain OMP_b-brl PF13505.6 EME70313.1 - 1.5e-06 28.4 4.4 0.0041 17.3 1.1 2.3 1 1 1 2 2 2 2 Outer membrane protein beta-barrel domain Na_H_Exchanger PF00999.21 EME70314.1 - 1.8e-42 145.5 51.7 2.6e-42 145.0 51.7 1.2 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family cNMP_binding PF00027.29 EME70314.1 - 4.9e-18 65.0 0.0 1.4e-17 63.5 0.0 1.8 1 0 0 1 1 1 1 Cyclic nucleotide-binding domain Rick_17kDa_Anti PF05433.15 EME70317.1 - 0.0012 18.7 7.0 0.0012 18.7 7.0 2.4 2 1 1 3 3 3 2 Glycine zipper 2TM domain Gly-zipper_YMGG PF13441.6 EME70317.1 - 0.029 14.1 33.9 0.051 13.3 33.9 1.4 1 0 0 1 1 1 0 YMGG-like Gly-zipper Gly-zipper_OmpA PF13436.6 EME70317.1 - 0.044 13.6 31.9 0.085 12.7 31.9 1.5 1 0 0 1 1 1 0 Glycine-zipper domain TraT PF05818.12 EME70317.1 - 0.35 10.5 8.7 0.4 10.3 8.7 1.1 1 0 0 1 1 1 0 Enterobacterial TraT complement resistance protein Gly-zipper_Omp PF13488.6 EME70317.1 - 0.41 10.7 35.8 0.15 12.1 32.9 1.7 1 1 0 1 1 1 0 Glycine zipper HATPase_c PF02518.26 EME70318.1 - 1.8e-17 63.8 0.0 2.9e-17 63.2 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 EME70318.1 - 0.0023 17.9 2.2 0.0033 17.4 0.1 2.4 2 1 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.6 EME70318.1 - 0.015 15.1 0.0 0.024 14.5 0.0 1.3 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.6 EME70318.1 - 0.095 12.6 0.0 0.18 11.7 0.0 1.5 1 0 0 1 1 1 0 GHKL domain FlgN PF05130.12 EME70318.1 - 0.45 11.0 2.5 1 9.8 0.3 2.5 2 1 1 3 3 3 0 FlgN protein Response_reg PF00072.24 EME70319.1 - 9e-22 77.4 0.0 1.3e-21 76.9 0.0 1.2 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 EME70319.1 - 3.7e-08 33.3 0.0 5.8e-08 32.7 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal AMP-binding PF00501.28 EME70321.1 - 1.4e-92 310.5 0.1 1.7e-92 310.2 0.1 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 EME70321.1 - 2e-25 89.5 0.1 6.9e-25 87.8 0.0 1.9 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 EME70321.1 - 1.4e-20 73.0 1.4 2.9e-20 71.9 1.4 1.6 1 0 0 1 1 1 1 Acetyl-coenzyme A synthetase N-terminus Hydrolase_4 PF12146.8 EME70322.1 - 7.6e-15 54.8 0.4 2.6e-09 36.7 0.2 2.1 1 1 1 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 EME70322.1 - 7.5e-08 32.3 0.3 0.0046 16.6 0.3 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold AXE1 PF05448.12 EME70322.1 - 5.9e-06 25.2 0.0 0.008 14.9 0.0 2.9 2 1 1 3 3 3 2 Acetyl xylan esterase (AXE1) Abhydrolase_6 PF12697.7 EME70322.1 - 0.00075 20.2 9.2 0.0013 19.4 4.7 2.2 1 1 1 2 2 2 1 Alpha/beta hydrolase family Peptidase_S15 PF02129.18 EME70322.1 - 0.0013 18.3 0.1 0.017 14.7 0.1 2.0 1 1 1 2 2 2 1 X-Pro dipeptidyl-peptidase (S15 family) Peptidase_S9 PF00326.21 EME70322.1 - 0.0065 16.0 2.4 0.09 12.2 2.4 2.2 1 1 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_3 PF07859.13 EME70322.1 - 0.013 15.4 0.4 0.034 14.0 0.3 1.8 1 1 0 1 1 1 0 alpha/beta hydrolase fold FSH1 PF03959.13 EME70322.1 - 0.019 14.6 0.0 0.027 14.1 0.0 1.3 1 0 0 1 1 1 0 Serine hydrolase (FSH1) Abhydrolase_2 PF02230.16 EME70322.1 - 0.037 13.8 0.0 4 7.2 0.0 2.9 3 0 0 3 3 3 0 Phospholipase/Carboxylesterase Trypsin PF00089.26 EME70323.1 - 4.3e-09 36.5 0.4 0.0013 18.6 2.9 2.2 2 0 0 2 2 2 2 Trypsin MCPsignal PF00015.21 EME70324.1 - 2.2e-32 112.2 28.2 6.3e-32 110.8 20.2 3.2 1 1 1 2 2 2 1 Methyl-accepting chemotaxis protein (MCP) signalling domain Hemerythrin PF01814.23 EME70324.1 - 9.9e-07 29.4 1.9 9.9e-07 29.4 1.9 3.5 3 2 0 3 3 3 1 Hemerythrin HHE cation binding domain DUF948 PF06103.11 EME70324.1 - 7.4e-06 26.1 9.2 0.0014 18.9 0.2 4.3 1 1 2 4 4 4 1 Bacterial protein of unknown function (DUF948) DUF1664 PF07889.12 EME70324.1 - 0.0011 19.0 1.5 1.5 8.9 0.3 3.1 2 2 0 2 2 2 2 Protein of unknown function (DUF1664) T7SS_ESX_EspC PF10824.8 EME70324.1 - 0.0068 16.9 2.3 0.0068 16.9 2.3 5.1 5 1 2 7 7 7 1 Excreted virulence factor EspC, type VII ESX diderm DUF3450 PF11932.8 EME70324.1 - 0.016 14.6 0.3 0.2 10.9 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) HAMP PF00672.25 EME70324.1 - 0.021 15.2 0.2 0.021 15.2 0.2 4.8 5 2 0 5 5 5 0 HAMP domain Mur_ligase_C PF02875.21 EME70324.1 - 0.066 13.5 0.0 0.38 11.0 0.0 2.3 1 0 0 1 1 1 0 Mur ligase family, glutamate ligase domain H-kinase_dim PF02895.14 EME70324.1 - 0.31 11.5 2.9 8.2 6.9 0.0 3.0 2 1 0 2 2 2 0 Signal transducing histidine kinase, homodimeric domain TPR_10 PF13374.6 EME70324.1 - 1.3 9.0 4.4 0.97 9.4 0.1 3.0 3 0 0 3 3 3 0 Tetratricopeptide repeat DUF2219 PF09982.9 EME70325.1 - 1e-96 323.6 0.0 1.2e-96 323.4 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2219) Esterase_phd PF10503.9 EME70327.1 - 3.3e-22 79.1 2.4 1.9e-21 76.6 2.4 2.0 1 1 0 1 1 1 1 Esterase PHB depolymerase Esterase PF00756.20 EME70327.1 - 6.7e-06 25.9 0.0 1.7e-05 24.6 0.0 1.6 1 1 0 1 1 1 1 Putative esterase Peptidase_S9 PF00326.21 EME70327.1 - 0.00098 18.6 0.7 0.0042 16.6 0.7 1.9 1 1 0 1 1 1 1 Prolyl oligopeptidase family FSH1 PF03959.13 EME70327.1 - 0.18 11.4 0.1 0.8 9.3 0.1 2.1 1 1 0 1 1 1 0 Serine hydrolase (FSH1) Dyp_perox PF04261.12 EME70328.1 - 1.6e-73 247.6 0.0 1.9e-73 247.3 0.0 1.1 1 0 0 1 1 1 1 Dyp-type peroxidase family GreA_GreB_N PF03449.15 EME70329.1 - 1.4e-31 108.4 2.1 1.9e-31 108.0 2.1 1.2 1 0 0 1 1 1 1 Transcription elongation factor, N-terminal GreA_GreB PF01272.19 EME70329.1 - 3.4e-30 103.8 0.1 5e-30 103.2 0.1 1.2 1 0 0 1 1 1 1 Transcription elongation factor, GreA/GreB, C-term PapC_C PF13953.6 EME70329.1 - 0.052 13.4 0.0 0.088 12.6 0.0 1.3 1 0 0 1 1 1 0 PapC C-terminal domain WD40_alt PF14077.6 EME70329.1 - 0.059 13.3 0.0 1.8 8.5 0.0 2.3 2 0 0 2 2 2 0 Alternative WD40 repeat motif CPSase_L_D2 PF02786.17 EME70330.1 - 5.7e-106 352.7 0.1 6.3e-66 221.9 0.0 2.2 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_D3 PF02787.19 EME70330.1 - 1.2e-36 125.8 0.0 2.3e-36 124.8 0.0 1.5 1 0 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain MGS PF02142.22 EME70330.1 - 1.9e-20 72.8 0.2 8.7e-20 70.7 0.1 2.3 2 0 0 2 2 2 1 MGS-like domain ATP-grasp PF02222.22 EME70330.1 - 1.8e-14 53.7 0.0 4.4e-08 32.9 0.0 2.4 2 0 0 2 2 2 2 ATP-grasp domain ATPgrasp_Ter PF15632.6 EME70330.1 - 6.3e-11 42.1 0.3 3.8e-06 26.7 0.1 3.1 3 1 0 3 3 3 2 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.14 EME70330.1 - 9.7e-11 42.0 0.0 3.2e-07 30.5 0.0 3.5 3 0 0 3 3 3 1 ATP-grasp domain Dala_Dala_lig_C PF07478.13 EME70330.1 - 1e-07 31.7 0.1 0.00035 20.2 0.0 2.4 2 0 0 2 2 2 2 D-ala D-ala ligase C-terminus RimK PF08443.11 EME70330.1 - 4.2e-06 26.5 0.0 0.0049 16.5 0.0 3.6 3 0 0 3 3 3 1 RimK-like ATP-grasp domain ATP-grasp_5 PF13549.6 EME70330.1 - 8.1e-05 22.2 0.0 0.001 18.5 0.0 2.4 2 0 0 2 2 2 1 ATP-grasp domain ATP-grasp_2 PF08442.10 EME70330.1 - 0.021 14.4 0.2 5.1 6.6 0.0 3.1 3 1 0 3 3 3 0 ATP-grasp domain TSR PF18487.1 EME70330.1 - 0.13 12.5 0.4 0.32 11.2 0.4 1.6 1 0 0 1 1 1 0 Thrombospondin type 1 repeat CPSase_sm_chain PF00988.22 EME70331.1 - 1.4e-49 167.2 0.0 2.3e-49 166.5 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.28 EME70331.1 - 1e-46 159.1 0.0 1.4e-46 158.7 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 EME70331.1 - 1.5e-11 44.5 0.3 3.1e-09 36.9 0.3 2.4 1 1 0 1 1 1 1 Peptidase C26 DJ-1_PfpI PF01965.24 EME70331.1 - 0.084 12.7 0.0 0.17 11.7 0.0 1.5 1 0 0 1 1 1 0 DJ-1/PfpI family YqeY PF09424.10 EME70332.1 - 9.3e-45 152.2 4.3 1e-44 152.1 4.3 1.0 1 0 0 1 1 1 1 Yqey-like protein Toprim_N PF08275.11 EME70333.1 - 1e-40 138.7 0.0 1.8e-40 137.9 0.0 1.4 1 0 0 1 1 1 1 DNA primase catalytic core, N-terminal domain zf-CHC2 PF01807.20 EME70333.1 - 1.3e-34 118.0 0.0 2.2e-34 117.2 0.0 1.4 1 0 0 1 1 1 1 CHC2 zinc finger Toprim_4 PF13662.6 EME70333.1 - 2.1e-17 63.4 0.0 4e-17 62.5 0.0 1.5 1 0 0 1 1 1 1 Toprim domain Toprim_2 PF13155.6 EME70333.1 - 1.7e-14 54.0 0.0 3.8e-14 52.9 0.0 1.6 1 0 0 1 1 1 1 Toprim-like Toprim PF01751.22 EME70333.1 - 2e-06 28.0 0.0 4.4e-06 26.9 0.0 1.6 1 0 0 1 1 1 1 Toprim domain Toprim_3 PF13362.6 EME70333.1 - 0.00012 22.3 0.0 0.00031 21.1 0.0 1.7 1 0 0 1 1 1 1 Toprim domain GST_N_3 PF13417.6 EME70334.1 - 1.7e-12 47.6 0.0 2.4e-12 47.1 0.0 1.2 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N PF02798.20 EME70334.1 - 7.9e-12 45.4 0.0 1e-11 45.0 0.0 1.2 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.6 EME70334.1 - 1.5e-11 44.4 0.0 2.1e-11 43.9 0.0 1.2 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_4 PF17172.4 EME70334.1 - 0.0011 19.7 0.0 0.0018 19.0 0.0 1.3 1 0 0 1 1 1 1 Glutathione S-transferase N-terminal domain Tom37 PF10568.9 EME70334.1 - 0.063 13.6 0.0 0.08 13.3 0.0 1.2 1 0 0 1 1 1 0 Outer mitochondrial membrane transport complex protein GST_C_4 PF14834.6 EME70334.1 - 0.076 13.4 0.0 0.14 12.5 0.0 1.5 1 0 0 1 1 1 0 Glutathione S-transferase, C-terminal domain GluRS_N PF18466.1 EME70334.1 - 0.16 12.4 0.0 0.26 11.7 0.0 1.3 1 0 0 1 1 1 0 Glutamate--tRNA ligase N-terminal domain Peptidase_M17 PF00883.21 EME70335.1 - 4.8e-103 344.7 0.0 5.7e-103 344.5 0.0 1.0 1 0 0 1 1 1 1 Cytosol aminopeptidase family, catalytic domain TrkH PF02386.16 EME70336.1 - 3.9e-58 197.1 18.1 1.7e-56 191.8 18.1 2.0 1 1 0 1 1 1 1 Cation transport protein DUF5353 PF17304.2 EME70336.1 - 0.016 14.9 0.4 0.016 14.9 0.4 3.2 3 1 0 3 3 3 0 Family of unknown function (DUF5353) DUF5423 PF17461.2 EME70336.1 - 0.04 12.8 2.4 0.088 11.6 2.4 1.6 1 0 0 1 1 1 0 Family of unknown function (DUF5423) TrkH PF02386.16 EME70337.1 - 2.7e-42 144.9 8.5 1.2e-41 142.8 8.5 1.8 1 1 0 1 1 1 1 Cation transport protein CheZ PF04344.13 EME70338.1 - 1.5e-10 41.4 2.5 1.3e-08 35.0 0.4 2.0 1 1 1 2 2 2 2 Chemotaxis phosphatase, CheZ DUF4164 PF13747.6 EME70338.1 - 0.012 15.9 0.0 0.029 14.6 0.0 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4164) MeaB PF03308.16 EME70339.1 - 7.9e-107 356.2 0.2 9.1e-107 356.0 0.2 1.0 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB cobW PF02492.19 EME70339.1 - 2.4e-06 27.2 0.1 8.5e-06 25.5 0.1 1.9 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_24 PF13479.6 EME70339.1 - 3.9e-05 23.4 0.0 6.5e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain ATP_bind_1 PF03029.17 EME70339.1 - 0.0016 18.3 0.0 0.0029 17.4 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein DUF463 PF04317.12 EME70339.1 - 0.026 13.5 0.0 0.051 12.5 0.0 1.5 2 0 0 2 2 2 0 YcjX-like family, DUF463 Viral_helicase1 PF01443.18 EME70339.1 - 0.041 13.6 0.1 0.065 13.0 0.1 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase MMR_HSR1 PF01926.23 EME70339.1 - 0.049 13.7 0.1 0.26 11.4 0.0 2.0 2 0 0 2 2 2 0 50S ribosome-binding GTPase PALP PF00291.25 EME70339.1 - 0.05 13.0 1.1 2 7.8 0.7 2.7 1 1 1 2 2 2 0 Pyridoxal-phosphate dependent enzyme SRP54 PF00448.22 EME70339.1 - 0.12 12.0 0.2 0.86 9.2 0.0 2.2 2 1 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_18 PF13238.6 EME70339.1 - 0.12 12.9 0.2 0.28 11.7 0.2 1.6 1 0 0 1 1 1 0 AAA domain ATPase PF06745.13 EME70339.1 - 0.14 11.4 0.0 0.21 10.9 0.0 1.2 1 0 0 1 1 1 0 KaiC AAA_17 PF13207.6 EME70339.1 - 0.15 12.5 0.0 0.3 11.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain GcrA PF07750.11 EME70341.1 - 0.093 13.1 1.9 0.1 13.0 1.9 1.2 1 0 0 1 1 1 0 GcrA cell cycle regulator FUSC PF04632.12 EME70341.1 - 0.73 8.3 6.0 0.84 8.1 6.0 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family Peptidase_M32 PF02074.15 EME70342.1 - 2.3e-165 551.1 0.0 2.5e-165 550.9 0.0 1.0 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase DJ-1_PfpI PF01965.24 EME70343.1 - 1.1e-05 25.3 0.8 4.7e-05 23.2 0.8 2.1 1 1 0 1 1 1 1 DJ-1/PfpI family GATase PF00117.28 EME70343.1 - 0.096 12.5 0.1 0.15 11.8 0.1 1.3 1 1 0 1 1 1 0 Glutamine amidotransferase class-I TruB_N PF01509.18 EME70344.1 - 3.5e-53 180.0 0.0 4.7e-53 179.6 0.0 1.2 1 0 0 1 1 1 1 TruB family pseudouridylate synthase (N terminal domain) TruB_C_2 PF16198.5 EME70344.1 - 1.6e-13 50.6 0.1 4.5e-13 49.1 0.0 1.8 2 0 0 2 2 2 1 tRNA pseudouridylate synthase B C-terminal domain TruB-C_2 PF09157.11 EME70344.1 - 0.00022 21.2 3.4 0.0005 20.0 0.1 2.9 3 0 0 3 3 3 1 Pseudouridine synthase II TruB, C-terminal TruB_C PF09142.11 EME70344.1 - 0.0017 18.1 3.0 0.018 14.8 0.6 3.3 3 1 0 3 3 3 1 tRNA Pseudouridine synthase II, C terminal PHA_gran_rgn PF09650.10 EME70344.1 - 0.15 12.4 0.0 0.3 11.4 0.0 1.5 1 0 0 1 1 1 0 Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn) Ribosomal_S15 PF00312.22 EME70345.1 - 2e-37 127.2 1.1 2.3e-37 127.1 1.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S15 FACT-Spt16_Nlob PF14826.6 EME70345.1 - 0.01 15.6 0.0 0.021 14.6 0.0 1.5 1 1 1 2 2 2 0 FACT complex subunit SPT16 N-terminal lobe domain RNase_PH PF01138.21 EME70346.1 - 5.5e-51 172.5 0.0 1.7e-25 90.0 0.0 2.4 2 0 0 2 2 2 2 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 EME70346.1 - 7e-17 61.2 2.0 6.5e-09 35.7 0.0 2.6 2 0 0 2 2 2 2 3' exoribonuclease family, domain 2 S1 PF00575.23 EME70346.1 - 7.1e-17 61.5 6.6 1e-16 61.0 2.8 3.1 3 0 0 3 3 3 1 S1 RNA binding domain PNPase PF03726.14 EME70346.1 - 1.6e-14 54.1 0.1 5.7e-14 52.4 0.1 1.9 1 0 0 1 1 1 1 Polyribonucleotide nucleotidyltransferase, RNA binding domain KH_1 PF00013.29 EME70346.1 - 1.3e-12 47.3 2.1 6.3e-12 45.2 2.1 2.3 1 0 0 1 1 1 1 KH domain KH_2 PF07650.17 EME70346.1 - 0.016 15.0 0.2 0.046 13.6 0.2 1.7 1 0 0 1 1 1 0 KH domain Cauli_DNA-bind PF03310.13 EME70346.1 - 0.05 13.7 0.0 0.14 12.3 0.0 1.7 1 0 0 1 1 1 0 Caulimovirus DNA-binding protein SelR PF01641.18 EME70347.1 - 6.2e-55 184.5 0.0 7e-55 184.3 0.0 1.0 1 0 0 1 1 1 1 SelR domain Yippee-Mis18 PF03226.14 EME70347.1 - 0.0091 16.2 0.2 0.016 15.4 0.2 1.4 1 1 0 1 1 1 1 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly Endonuclease_7 PF02945.15 EME70347.1 - 0.22 11.4 4.0 1.8 8.6 4.0 2.0 1 1 0 1 1 1 0 Recombination endonuclease VII Ribosomal_L37e PF01907.19 EME70347.1 - 0.42 10.8 3.9 3.1 8.0 0.6 2.2 2 0 0 2 2 2 0 Ribosomal protein L37e VF530 PF09905.9 EME70348.1 - 2.1e-33 114.3 0.0 2.7e-33 113.9 0.0 1.1 1 0 0 1 1 1 1 DNA-binding protein VF530 PNP_UDP_1 PF01048.20 EME70349.1 - 4.2e-44 150.6 0.1 4.9e-44 150.3 0.1 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily NAD_binding_10 PF13460.6 EME70349.1 - 0.031 14.2 0.0 0.067 13.1 0.0 1.5 1 0 0 1 1 1 0 NAD(P)H-binding PemK_toxin PF02452.17 EME70350.1 - 3.8e-11 43.4 0.0 4.1e-11 43.3 0.0 1.0 1 0 0 1 1 1 1 PemK-like, MazF-like toxin of type II toxin-antitoxin system PrlF_antitoxin PF15937.5 EME70351.1 - 7e-12 45.6 0.0 8.2e-12 45.4 0.0 1.0 1 0 0 1 1 1 1 prlF antitoxin for toxin YhaV_toxin MazE_antitoxin PF04014.18 EME70351.1 - 0.0061 16.5 0.0 0.011 15.7 0.0 1.5 1 1 1 2 2 2 1 Antidote-toxin recognition MazE, bacterial antitoxin IF-2B PF01008.17 EME70352.1 - 5.5e-53 180.0 0.0 7.2e-53 179.6 0.0 1.1 1 0 0 1 1 1 1 Initiation factor 2 subunit family TRAM PF01938.20 EME70352.1 - 0.011 15.8 0.0 0.023 14.7 0.0 1.5 1 0 0 1 1 1 0 TRAM domain HAP2-GCS1 PF10699.9 EME70352.1 - 0.033 14.2 0.1 0.063 13.3 0.1 1.4 1 0 0 1 1 1 0 Male gamete fusion factor RmuC PF02646.16 EME70353.1 - 4.4e-76 255.8 1.7 5e-76 255.6 0.1 1.8 2 1 0 2 2 2 1 RmuC family IFT57 PF10498.9 EME70353.1 - 0.0013 17.8 3.4 0.43 9.5 0.5 2.3 2 0 0 2 2 2 2 Intra-flagellar transport protein 57 Apolipoprotein PF01442.18 EME70353.1 - 0.0024 17.8 14.2 0.0024 17.8 14.2 3.0 3 0 0 3 3 3 1 Apolipoprotein A1/A4/E domain MLD PF11647.8 EME70353.1 - 0.0098 16.2 0.5 0.12 12.7 0.0 2.8 2 2 2 4 4 4 1 Membrane Localization Domain Baculo_PEP_C PF04513.12 EME70353.1 - 0.012 15.6 2.3 3.3 7.8 0.1 2.9 2 1 1 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus Cactin_mid PF10312.9 EME70353.1 - 0.057 13.1 4.3 0.019 14.7 1.5 1.6 2 0 0 2 2 2 0 Conserved mid region of cactin DUF2218 PF09981.9 EME70353.1 - 0.088 13.2 0.4 5.4 7.5 0.0 3.2 2 1 1 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2218) DUF1664 PF07889.12 EME70353.1 - 0.28 11.2 9.2 2.1 8.4 0.5 3.5 3 0 0 3 3 3 0 Protein of unknown function (DUF1664) DUF16 PF01519.16 EME70353.1 - 0.39 11.2 10.2 0.43 11.1 1.0 3.0 3 0 0 3 3 3 0 Protein of unknown function DUF16 BAR_3 PF16746.5 EME70353.1 - 0.45 10.2 3.2 3.6 7.2 0.1 2.7 2 1 1 3 3 3 0 BAR domain of APPL family MutS_III PF05192.18 EME70353.1 - 1.6 8.9 4.7 61 3.7 4.7 2.5 1 1 0 1 1 1 0 MutS domain III CcmD PF04995.14 EME70353.1 - 5.1 7.3 7.2 48 4.1 7.2 2.5 1 1 0 1 1 1 0 Heme exporter protein D (CcmD) DUF745 PF05335.13 EME70353.1 - 8.1 6.1 14.4 1.3 8.7 0.7 3.7 3 1 1 4 4 4 0 Protein of unknown function (DUF745) Cons_hypoth95 PF03602.15 EME70354.1 - 1.3e-45 155.3 0.0 1.5e-45 155.1 0.0 1.0 1 0 0 1 1 1 1 Conserved hypothetical protein 95 MTS PF05175.14 EME70354.1 - 0.0003 20.4 0.0 0.00037 20.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain MethyltransfD12 PF02086.15 EME70354.1 - 0.013 15.2 0.1 0.92 9.1 0.0 2.1 1 1 0 2 2 2 0 D12 class N6 adenine-specific DNA methyltransferase S4 PF01479.25 EME70355.1 - 2.2e-13 49.7 0.1 6.8e-13 48.1 0.0 1.9 2 0 0 2 2 2 1 S4 domain PseudoU_synth_2 PF00849.22 EME70355.1 - 1.1e-12 48.4 0.0 7.1e-12 45.7 0.0 2.1 1 1 0 1 1 1 1 RNA pseudouridylate synthase Peptidase_C26 PF07722.13 EME70356.1 - 4.6e-61 206.3 0.0 5.2e-61 206.1 0.0 1.0 1 0 0 1 1 1 1 Peptidase C26 GATase PF00117.28 EME70356.1 - 3.3e-16 59.6 0.0 5.4e-16 58.9 0.0 1.3 1 1 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.14 EME70356.1 - 0.014 15.0 0.1 0.021 14.4 0.1 1.2 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain GATase_5 PF13507.6 EME70356.1 - 0.031 13.4 0.0 0.04 13.0 0.0 1.1 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain Lactate_perm PF02652.14 EME70357.1 - 1.4e-209 697.1 44.5 1.6e-209 697.0 44.5 1.0 1 0 0 1 1 1 1 L-lactate permease FCD PF07729.12 EME70358.1 - 3.9e-24 85.5 12.2 3.9e-24 85.5 12.2 1.7 1 1 1 2 2 2 1 FCD domain CCG PF02754.16 EME70359.1 - 2.3e-31 107.9 0.4 1.4e-14 54.0 0.3 2.3 2 0 0 2 2 2 2 Cysteine-rich domain LUD_dom PF02589.15 EME70360.1 - 1.6e-52 178.0 0.1 2.2e-52 177.5 0.1 1.2 1 0 0 1 1 1 1 LUD domain DUF3390 PF11870.8 EME70360.1 - 3.6e-26 91.3 0.2 6.6e-26 90.5 0.2 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF3390) Fer4_8 PF13183.6 EME70360.1 - 3.3e-07 30.7 6.6 8.7e-07 29.3 6.6 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 EME70360.1 - 2e-06 27.3 9.1 0.0011 18.7 0.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 EME70360.1 - 1.2e-05 25.4 1.8 0.018 15.2 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 EME70360.1 - 2.9e-05 24.1 9.4 0.002 18.2 11.3 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 EME70360.1 - 0.00021 21.8 10.4 0.00058 20.4 10.4 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 EME70360.1 - 0.00026 21.9 6.4 0.00069 20.5 6.4 1.8 1 1 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_20 PF14691.6 EME70360.1 - 0.00041 20.1 1.4 0.22 11.3 0.2 2.5 2 0 0 2 2 2 2 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_17 PF13534.6 EME70360.1 - 0.0015 19.0 6.2 0.0044 17.5 6.2 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 EME70360.1 - 0.0025 17.8 13.5 0.082 13.0 2.8 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 EME70360.1 - 0.012 15.7 13.7 0.065 13.3 3.3 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.7 EME70360.1 - 0.017 15.6 12.3 0.11 13.0 2.2 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_21 PF14697.6 EME70360.1 - 0.055 13.6 8.6 0.39 10.9 0.4 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 EME70360.1 - 0.056 13.6 3.9 5.8 7.2 0.2 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 EME70360.1 - 0.25 12.4 14.1 1.1 10.3 1.4 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.6 EME70360.1 - 0.7 10.5 8.6 0.36 11.4 5.4 2.2 2 1 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I LUD_dom PF02589.15 EME70361.1 - 4.9e-33 114.4 0.0 6.5e-33 114.1 0.0 1.2 1 0 0 1 1 1 1 LUD domain FAD-oxidase_C PF02913.19 EME70362.1 - 2e-54 184.9 0.1 3.4e-54 184.1 0.1 1.4 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 EME70362.1 - 1.4e-30 105.8 0.7 2.6e-30 105.0 0.7 1.5 1 0 0 1 1 1 1 FAD binding domain Fer4_7 PF12838.7 EME70362.1 - 1.2e-10 41.8 4.8 2.8e-10 40.6 4.8 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 EME70362.1 - 1.3e-10 41.6 3.5 2.7e-10 40.6 3.5 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 EME70362.1 - 1.4e-09 38.3 4.9 2.8e-09 37.4 4.9 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 EME70362.1 - 4.4e-07 30.7 3.5 9.2e-07 29.7 3.5 1.6 1 0 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 EME70362.1 - 8e-07 29.1 5.2 1.9e-06 27.9 5.2 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 EME70362.1 - 2.6e-06 27.0 14.7 0.0063 16.3 2.1 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 EME70362.1 - 1.5e-05 25.0 9.9 0.00098 19.2 11.8 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain CCG PF02754.16 EME70362.1 - 3.3e-05 24.0 7.8 0.0011 19.1 0.0 3.7 4 0 0 4 4 4 2 Cysteine-rich domain Fer4_2 PF12797.7 EME70362.1 - 7.2e-05 22.6 12.6 0.012 15.7 2.3 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 EME70362.1 - 0.00076 19.8 10.5 0.093 13.3 1.7 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 EME70362.1 - 0.0018 18.4 0.5 0.83 9.9 0.0 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 EME70362.1 - 0.0038 17.3 11.2 0.049 13.8 11.2 2.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 EME70362.1 - 0.0055 16.7 14.8 0.32 11.1 4.8 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 EME70362.1 - 2.8 8.5 16.3 2.1 8.9 2.6 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 EME70362.1 - 3 9.0 18.2 11 7.2 4.1 3.1 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_22 PF17179.4 EME70362.1 - 4.6 8.2 11.2 5 8.0 1.3 2.7 2 1 2 4 4 3 0 4Fe-4S dicluster domain ECH_1 PF00378.20 EME70363.1 - 6.6e-50 169.8 0.0 8.2e-50 169.5 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 EME70363.1 - 2.3e-22 80.0 0.0 3.2e-22 79.5 0.0 1.1 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase HTH_1 PF00126.27 EME70363.1 - 0.1 12.6 0.1 0.24 11.4 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Hemerythrin PF01814.23 EME70366.1 - 1.4e-11 45.1 6.6 1.7e-11 44.8 6.6 1.1 1 0 0 1 1 1 1 Hemerythrin HHE cation binding domain DUF4054 PF13262.6 EME70366.1 - 0.014 15.4 0.2 0.014 15.4 0.2 1.4 2 0 0 2 2 2 0 Protein of unknown function (DUF4054) DUF3479 PF11965.8 EME70366.1 - 0.084 13.0 0.2 0.11 12.6 0.2 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF3479) FA_desaturase_2 PF03405.14 EME70367.1 - 0.00013 20.9 0.0 0.14 11.0 0.0 2.1 2 0 0 2 2 2 2 Fatty acid desaturase Rubrerythrin PF02915.17 EME70367.1 - 0.0011 19.4 0.0 0.014 15.8 0.0 2.1 2 0 0 2 2 2 1 Rubrerythrin COQ7 PF03232.13 EME70367.1 - 0.017 14.9 0.0 0.19 11.5 0.0 2.1 2 0 0 2 2 2 0 Ubiquinone biosynthesis protein COQ7 Chloroa_b-bind PF00504.21 EME70367.1 - 0.053 14.0 0.0 0.13 12.8 0.0 1.7 1 1 0 1 1 1 0 Chlorophyll A-B binding protein ATP-synt_DE_N PF02823.16 EME70368.1 - 1.1e-25 89.3 0.3 1.4e-25 89.0 0.3 1.2 1 0 0 1 1 1 1 ATP synthase, Delta/Epsilon chain, beta-sandwich domain SLBB PF10531.9 EME70368.1 - 0.097 12.6 0.1 0.75 9.7 0.0 2.0 2 0 0 2 2 2 0 SLBB domain ATP-synt_ab PF00006.25 EME70369.1 - 6.7e-62 208.9 0.0 9.4e-62 208.4 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 EME70369.1 - 1.5e-22 79.9 0.4 3.3e-22 78.8 0.4 1.6 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain RsgA_GTPase PF03193.16 EME70369.1 - 0.00072 19.5 0.1 0.0019 18.2 0.0 1.6 2 0 0 2 2 2 1 RsgA GTPase NB-ARC PF00931.22 EME70369.1 - 0.0096 15.1 0.1 0.022 14.0 0.1 1.5 1 0 0 1 1 1 1 NB-ARC domain T3SS_ATPase_C PF18269.1 EME70369.1 - 0.015 15.2 0.5 0.12 12.3 0.5 2.3 1 1 0 1 1 1 0 T3SS EscN ATPase C-terminal domain AAA_16 PF13191.6 EME70369.1 - 0.12 12.7 0.1 0.41 11.0 0.1 1.9 1 0 0 1 1 1 0 AAA ATPase domain ATPase_2 PF01637.18 EME70369.1 - 0.13 12.2 0.0 0.22 11.4 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_19 PF13245.6 EME70369.1 - 0.14 12.5 0.5 0.3 11.4 0.2 1.7 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 EME70369.1 - 0.15 12.0 0.2 0.39 10.6 0.0 1.7 2 0 0 2 2 2 0 NACHT domain ATPase PF06745.13 EME70369.1 - 0.16 11.3 1.3 0.3 10.4 0.4 1.9 3 0 0 3 3 3 0 KaiC ATP-synt PF00231.19 EME70370.1 - 1.2e-93 313.9 5.0 1.3e-93 313.7 5.0 1.0 1 0 0 1 1 1 1 ATP synthase ATP-synt_ab PF00006.25 EME70371.1 - 2.6e-74 249.5 0.0 4e-74 248.9 0.0 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.27 EME70371.1 - 1.8e-48 164.0 2.0 3.2e-48 163.2 2.0 1.4 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.23 EME70371.1 - 1.5e-17 63.9 4.6 3.9e-17 62.5 4.6 1.8 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.10 EME70371.1 - 1.4e-05 25.2 0.8 5.3e-05 23.3 0.8 2.1 1 1 0 1 1 1 1 HAS barrel domain CSD2 PF17876.1 EME70371.1 - 0.17 12.0 1.0 1.1 9.5 0.2 2.3 2 0 0 2 2 2 0 Cold shock domain OSCP PF00213.18 EME70372.1 - 2.3e-48 164.5 0.7 2.6e-48 164.4 0.7 1.0 1 0 0 1 1 1 1 ATP synthase delta (OSCP) subunit RQC PF09382.10 EME70373.1 - 4.4e-40 136.0 0.0 1.1e-39 134.8 0.0 1.6 2 0 0 2 2 2 1 RQC domain HRDC PF00570.23 EME70373.1 - 8.6e-19 67.3 0.1 1.9e-18 66.2 0.1 1.6 1 0 0 1 1 1 1 HRDC domain RecQ_Zn_bind PF16124.5 EME70373.1 - 9.4e-18 64.7 0.1 1.9e-17 63.7 0.1 1.5 1 0 0 1 1 1 1 RecQ zinc-binding DEAD PF00270.29 EME70373.1 - 2.2e-17 63.4 0.0 3.1e-17 62.9 0.0 1.2 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 EME70373.1 - 1e-15 58.0 0.0 7.1e-13 48.9 0.0 2.4 2 0 0 2 2 2 2 Helicase conserved C-terminal domain PriA_C PF18074.1 EME70374.1 - 3.6e-19 69.4 0.0 9.1e-19 68.1 0.0 1.7 1 0 0 1 1 1 1 Primosomal protein N C-terminal domain PriA_3primeBD PF17764.1 EME70374.1 - 3.8e-15 55.5 0.0 7e-15 54.7 0.0 1.5 1 0 0 1 1 1 1 3′ DNA-binding domain (3′BD) DEAD PF00270.29 EME70374.1 - 2.5e-12 46.9 0.0 3.9e-12 46.3 0.0 1.3 1 0 0 1 1 1 1 DEAD/DEAH box helicase PriA_CRR PF18319.1 EME70374.1 - 8e-10 38.5 9.6 8e-10 38.5 9.6 2.5 3 0 0 3 3 3 1 PriA DNA helicase Cys-rich region (CRR) domain ResIII PF04851.15 EME70374.1 - 3.7e-09 36.8 0.0 7.4e-09 35.8 0.0 1.4 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 EME70374.1 - 3.1e-07 30.7 0.0 0.0034 17.7 0.0 2.3 2 0 0 2 2 2 2 Helicase conserved C-terminal domain AAA_30 PF13604.6 EME70374.1 - 9.6e-05 22.2 0.1 0.0002 21.1 0.1 1.6 1 0 0 1 1 1 1 AAA domain zinc-ribbons_6 PF07191.12 EME70374.1 - 0.0032 17.4 9.2 0.011 15.7 9.4 1.8 1 1 1 2 2 2 1 zinc-ribbons MarR_2 PF12802.7 EME70374.1 - 0.023 14.6 1.9 0.039 13.8 0.0 2.4 2 0 0 2 2 2 0 MarR family HTH_Tnp_Tc5 PF03221.16 EME70374.1 - 0.12 12.4 0.0 0.29 11.2 0.0 1.5 1 0 0 1 1 1 0 Tc5 transposase DNA-binding domain zinc_ribbon_12 PF11331.8 EME70374.1 - 0.21 11.4 7.0 0.042 13.7 3.0 1.9 1 1 1 2 2 2 0 Probable zinc-ribbon domain HypA PF01155.19 EME70374.1 - 3.7 7.6 9.9 1.3 9.0 1.6 2.3 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 EME70374.1 - 4.6 7.4 14.1 8 6.6 8.7 2.3 1 1 1 2 2 2 0 Double zinc ribbon DUF484 PF04340.12 EME70375.1 - 2.9e-26 92.6 0.1 2e-25 89.8 0.1 1.9 1 1 0 1 1 1 1 Protein of unknown function, DUF484 DUF805 PF05656.14 EME70376.1 - 1.7e-30 105.5 3.4 2e-30 105.3 3.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF805) DUF4381 PF14316.6 EME70376.1 - 0.03 14.6 1.4 0.062 13.5 1.4 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4381) DUF1129 PF06570.11 EME70376.1 - 0.087 12.3 1.5 0.12 11.9 1.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) DUF2207 PF09972.9 EME70376.1 - 0.12 11.1 9.2 5.5 5.6 10.1 1.9 1 1 1 2 2 2 0 Predicted membrane protein (DUF2207) DUF2613 PF11021.8 EME70376.1 - 0.29 11.3 2.1 0.61 10.2 2.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2613) DUF4131 PF13567.6 EME70376.1 - 0.39 10.4 4.3 0.28 10.8 3.0 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) Phage_holin_3_6 PF07332.11 EME70376.1 - 0.5 10.4 5.5 0.74 9.9 5.5 1.3 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III Pox_EPC_I2-L1 PF12575.8 EME70376.1 - 1.4 9.2 5.6 3.5 7.9 0.0 2.4 1 1 2 3 3 3 0 Poxvirus entry protein complex L1 and I2 DUF4191 PF13829.6 EME70376.1 - 8.5 5.7 7.3 34 3.7 7.3 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4191) Phage_integrase PF00589.22 EME70377.1 - 8.3e-34 116.8 0.0 1.6e-33 115.9 0.0 1.4 2 0 0 2 2 2 1 Phage integrase family Phage_int_SAM_1 PF02899.17 EME70377.1 - 3e-15 56.3 0.0 9e-15 54.7 0.0 1.8 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Smr PF01713.21 EME70377.1 - 0.05 14.0 0.0 0.29 11.5 0.0 2.3 1 1 0 1 1 1 0 Smr domain PUB_1 PF18486.1 EME70377.1 - 0.12 12.3 0.0 0.37 10.7 0.0 1.8 1 0 0 1 1 1 0 PNGase/UBA- or UBX-containing domain TsaE PF02367.17 EME70378.1 - 3.2e-33 114.4 0.0 3.9e-33 114.1 0.0 1.1 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE ABC_tran PF00005.27 EME70378.1 - 4.4e-05 24.0 0.0 4.7e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_18 PF13238.6 EME70378.1 - 0.00019 22.0 0.0 0.00022 21.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.6 EME70378.1 - 0.0024 17.5 0.2 0.0045 16.6 0.1 1.4 1 1 0 1 1 1 1 AAA domain AAA_7 PF12775.7 EME70378.1 - 0.0048 16.4 0.0 0.0074 15.8 0.0 1.2 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_22 PF13401.6 EME70378.1 - 0.0064 16.8 0.0 0.009 16.3 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 EME70378.1 - 0.0074 16.5 0.0 0.0082 16.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 EME70378.1 - 0.011 16.1 0.2 0.014 15.8 0.2 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.6 EME70378.1 - 0.013 15.2 0.0 0.027 14.2 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain MMR_HSR1 PF01926.23 EME70378.1 - 0.016 15.3 0.0 0.019 15.0 0.0 1.2 1 0 0 1 1 1 0 50S ribosome-binding GTPase RNA_helicase PF00910.22 EME70378.1 - 0.021 15.2 0.0 0.031 14.7 0.0 1.3 1 0 0 1 1 1 0 RNA helicase AAA PF00004.29 EME70378.1 - 0.027 14.9 0.0 0.04 14.4 0.0 1.3 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 EME70378.1 - 0.028 14.2 0.1 0.052 13.3 0.1 1.4 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 EME70378.1 - 0.031 14.2 0.6 0.06 13.3 0.1 1.7 1 1 0 2 2 2 0 NACHT domain AAA_28 PF13521.6 EME70378.1 - 0.037 14.3 0.0 0.045 14.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 EME70378.1 - 0.042 13.7 0.0 0.075 12.9 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase Zeta_toxin PF06414.12 EME70378.1 - 0.056 12.7 0.0 0.083 12.2 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin IstB_IS21 PF01695.17 EME70378.1 - 0.065 13.0 0.0 0.088 12.5 0.0 1.2 1 0 0 1 1 1 0 IstB-like ATP binding protein T2SSE PF00437.20 EME70378.1 - 0.068 12.2 0.0 0.087 11.9 0.0 1.1 1 0 0 1 1 1 0 Type II/IV secretion system protein APS_kinase PF01583.20 EME70378.1 - 0.086 12.7 0.0 0.12 12.2 0.0 1.2 1 0 0 1 1 1 0 Adenylylsulphate kinase NB-ARC PF00931.22 EME70378.1 - 0.096 11.8 0.0 0.11 11.6 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain CPT PF07931.12 EME70378.1 - 0.1 12.4 0.0 0.12 12.2 0.0 1.2 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein AAA_5 PF07728.14 EME70378.1 - 0.11 12.5 0.0 0.19 11.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) MeaB PF03308.16 EME70378.1 - 0.12 11.4 0.0 0.16 11.0 0.0 1.1 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB TrwB_AAD_bind PF10412.9 EME70378.1 - 0.13 11.1 0.0 0.18 10.7 0.0 1.1 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain DUF815 PF05673.13 EME70378.1 - 0.14 11.3 0.0 0.2 10.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF815) CbiA PF01656.23 EME70378.1 - 0.15 12.1 0.1 0.24 11.4 0.1 1.3 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain Fimbrial_PilY2 PF14481.6 EME70378.1 - 0.21 11.2 0.0 0.3 10.8 0.0 1.2 1 0 0 1 1 1 0 Type 4 fimbrial biogenesis protein PilY2 cobW PF02492.19 EME70378.1 - 0.22 11.1 0.0 0.3 10.7 0.0 1.2 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain CoA_trans PF01144.23 EME70378.1 - 0.23 10.9 0.0 0.28 10.5 0.0 1.2 1 0 0 1 1 1 0 Coenzyme A transferase AAA_23 PF13476.6 EME70378.1 - 0.26 11.8 0.0 0.28 11.7 0.0 1.1 1 0 0 1 1 1 0 AAA domain APH PF01636.23 EME70379.1 - 3.5e-24 86.1 10.2 3.5e-24 86.1 10.2 1.5 1 1 0 1 1 1 1 Phosphotransferase enzyme family APH_6_hur PF04655.14 EME70379.1 - 1.1e-05 25.0 2.0 3.3e-05 23.4 2.0 1.9 1 1 0 1 1 1 1 Aminoglycoside/hydroxyurea antibiotic resistance kinase EcKinase PF02958.20 EME70379.1 - 0.0015 18.0 0.0 0.097 12.0 0.0 2.1 2 0 0 2 2 2 2 Ecdysteroid kinase NTP_transf_3 PF12804.7 EME70380.1 - 2.3e-15 57.3 1.7 2.6e-15 57.2 1.7 1.2 1 1 0 1 1 1 1 MobA-like NTP transferase domain NTP_transferase PF00483.23 EME70380.1 - 1.5e-14 54.2 0.0 1.2e-13 51.2 0.0 1.9 2 0 0 2 2 2 1 Nucleotidyl transferase IspD PF01128.19 EME70380.1 - 0.0035 17.1 0.0 0.017 14.9 0.0 1.9 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase MarR PF01047.22 EME70381.1 - 4.3e-13 49.0 0.0 5.8e-13 48.6 0.0 1.2 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 EME70381.1 - 2.1e-11 43.6 0.1 3e-11 43.0 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 EME70381.1 - 4e-08 33.6 0.1 6.1e-08 33.0 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.19 EME70381.1 - 7.9e-05 22.5 0.0 0.00011 22.0 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB GntR PF00392.21 EME70381.1 - 0.00012 21.7 0.0 0.00022 20.8 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_24 PF13412.6 EME70381.1 - 0.00015 21.2 0.0 0.00034 20.1 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 EME70381.1 - 0.00035 20.4 0.0 0.00054 19.8 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.19 EME70381.1 - 0.00073 19.7 0.0 0.001 19.2 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_11 PF08279.12 EME70381.1 - 0.0012 18.7 0.0 0.0044 16.9 0.0 1.9 2 1 0 2 2 2 1 HTH domain HTH_IclR PF09339.10 EME70381.1 - 0.0053 16.5 0.1 0.0096 15.7 0.1 1.5 1 1 0 1 1 1 1 IclR helix-turn-helix domain DUF4423 PF14394.6 EME70381.1 - 0.0065 16.2 0.0 0.0075 16.0 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) HTH_20 PF12840.7 EME70381.1 - 0.015 15.4 0.0 0.027 14.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Crp_2 PF13545.6 EME70381.1 - 0.028 14.4 0.0 0.04 13.9 0.0 1.3 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain TBPIP PF07106.13 EME70381.1 - 0.032 14.1 0.0 0.053 13.5 0.0 1.3 1 0 0 1 1 1 0 TBPIP/Hop2 winged helix domain HTH_1 PF00126.27 EME70381.1 - 0.064 13.2 0.0 0.11 12.5 0.0 1.6 1 1 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Rrf2 PF02082.20 EME70381.1 - 0.082 13.3 0.0 0.12 12.7 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator Dimerisation2 PF16864.5 EME70381.1 - 0.1 12.6 0.0 0.13 12.3 0.0 1.2 1 0 0 1 1 1 0 Dimerisation domain HTH_10 PF04967.12 EME70381.1 - 0.13 12.1 0.0 0.29 11.0 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain Helicase_C PF00271.31 EME70382.1 - 2.8e-07 30.8 0.0 4.9e-07 30.1 0.0 1.3 1 0 0 1 1 1 1 Helicase conserved C-terminal domain HCV_core PF01542.18 EME70382.1 - 0.11 12.9 0.1 0.37 11.2 0.1 1.9 1 0 0 1 1 1 0 Hepatitis C virus core protein DUF2083 PF09856.9 EME70383.1 - 1.3e-71 239.5 0.1 2.3e-71 238.7 0.1 1.4 1 0 0 1 1 1 1 Predicted transcriptional regulator (DUF2083) Peptidase_M78 PF06114.13 EME70383.1 - 5.2e-17 61.9 0.2 2e-16 60.0 0.0 2.1 2 1 1 3 3 3 1 IrrE N-terminal-like domain HTH_3 PF01381.22 EME70383.1 - 2.5e-14 53.1 0.1 4.9e-14 52.1 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 EME70383.1 - 5.5e-12 45.9 1.3 1.7e-11 44.3 0.1 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_19 PF12844.7 EME70383.1 - 6.8e-11 42.0 0.0 1.4e-10 41.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.6 EME70383.1 - 3.2e-05 23.8 0.1 7.1e-05 22.7 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 EME70383.1 - 5.1e-05 23.6 0.1 9.4e-05 22.8 0.1 1.5 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_25 PF13413.6 EME70383.1 - 0.00053 19.8 0.1 0.0012 18.6 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain CENP-T_C PF15511.6 EME70383.1 - 0.019 15.1 0.1 3.8 7.7 0.0 2.8 3 0 0 3 3 3 0 Centromere kinetochore component CENP-T histone fold CinA_KH PF18146.1 EME70383.1 - 0.11 12.7 0.0 0.51 10.5 0.0 2.1 2 0 0 2 2 2 0 Damage-inducible protein CinA KH domain Carboxyl_trans PF01039.22 EME70384.1 - 2.1e-199 663.3 0.1 2.4e-199 663.1 0.1 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain MdcE PF06833.11 EME70384.1 - 0.04 13.4 0.3 0.46 9.9 0.0 2.3 2 1 0 3 3 3 0 Malonate decarboxylase gamma subunit (MdcE) NUC130_3NT PF08158.12 EME70384.1 - 0.13 12.6 0.1 0.28 11.6 0.1 1.5 1 0 0 1 1 1 0 NUC130/3NT domain CPSase_L_D2 PF02786.17 EME70385.1 - 1.2e-83 279.8 0.3 3.3e-83 278.3 0.1 1.8 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Biotin_carb_N PF00289.22 EME70385.1 - 1.2e-44 151.4 0.4 3.5e-44 149.8 0.4 1.9 1 0 0 1 1 1 1 Biotin carboxylase, N-terminal domain Biotin_carb_C PF02785.19 EME70385.1 - 2e-39 134.0 0.0 4.1e-39 133.0 0.0 1.5 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain PCC_BT PF18140.1 EME70385.1 - 9e-31 106.9 0.0 2.1e-30 105.7 0.0 1.7 1 0 0 1 1 1 1 Propionyl-coenzyme A carboxylase BT domain Biotin_lipoyl PF00364.22 EME70385.1 - 6.7e-14 51.5 0.3 2.1e-13 49.9 0.3 1.9 1 0 0 1 1 1 1 Biotin-requiring enzyme Dala_Dala_lig_C PF07478.13 EME70385.1 - 2.3e-09 37.1 0.0 4.7e-09 36.1 0.0 1.5 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp PF02222.22 EME70385.1 - 6.1e-07 29.2 0.6 2.2e-06 27.4 0.0 2.0 2 0 0 2 2 2 1 ATP-grasp domain Biotin_lipoyl_2 PF13533.6 EME70385.1 - 1.4e-05 24.9 0.0 3.6e-05 23.5 0.0 1.6 1 0 0 1 1 1 1 Biotin-lipoyl like ATP-grasp_3 PF02655.14 EME70385.1 - 2.3e-05 24.5 0.0 4.1e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_5 PF13549.6 EME70385.1 - 0.00016 21.3 0.0 0.00038 20.0 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain QRPTase_N PF02749.16 EME70385.1 - 0.00095 19.2 0.0 0.0038 17.3 0.0 2.0 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain GARS_A PF01071.19 EME70385.1 - 0.0019 18.0 1.9 0.0022 17.8 0.1 2.0 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain RimK PF08443.11 EME70385.1 - 0.016 14.8 0.0 0.18 11.4 0.0 2.1 2 0 0 2 2 2 0 RimK-like ATP-grasp domain Pro_CA PF00484.19 EME70386.1 - 3.2e-51 173.7 0.9 4e-51 173.4 0.9 1.1 1 0 0 1 1 1 1 Carbonic anhydrase PNP_UDP_1 PF01048.20 EME70386.1 - 0.12 11.6 0.0 0.16 11.2 0.0 1.1 1 0 0 1 1 1 0 Phosphorylase superfamily MM_CoA_mutase PF01642.22 EME70387.1 - 7e-244 810.1 1.3 8.2e-244 809.9 1.3 1.0 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase B12-binding PF02310.19 EME70387.1 - 1e-14 54.6 0.4 2.5e-14 53.4 0.4 1.7 1 0 0 1 1 1 1 B12 binding domain PhnI PF05861.12 EME70387.1 - 0.067 12.0 0.2 0.22 10.4 0.0 1.8 2 0 0 2 2 2 0 Bacterial phosphonate metabolism protein (PhnI) MCPsignal PF00015.21 EME70389.1 - 1.3e-08 34.9 8.9 5e-06 26.4 1.8 2.3 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain Jnk-SapK_ap_N PF09744.9 EME70389.1 - 0.00014 22.2 0.1 0.00067 19.9 0.0 1.9 2 0 0 2 2 2 1 JNK_SAPK-associated protein-1 DASH_Dad2 PF08654.10 EME70389.1 - 0.0019 18.6 2.7 0.07 13.6 0.5 3.0 3 1 0 3 3 3 1 DASH complex subunit Dad2 WXG100 PF06013.12 EME70389.1 - 0.0088 16.3 1.2 7.8 6.8 0.0 3.2 3 0 0 3 3 3 1 Proteins of 100 residues with WXG HisKA_3 PF07730.13 EME70389.1 - 0.032 14.8 11.3 2.4 8.7 0.4 4.3 4 1 0 4 4 4 0 Histidine kinase CdvA PF18822.1 EME70389.1 - 0.032 14.0 0.1 0.17 11.7 0.0 2.0 2 0 0 2 2 2 0 CdvA-like coiled-coil domain Spc7 PF08317.11 EME70389.1 - 0.039 12.8 0.1 0.29 10.0 0.1 2.0 2 0 0 2 2 2 0 Spc7 kinetochore protein Apolipoprotein PF01442.18 EME70389.1 - 0.12 12.2 4.7 0.27 11.1 0.8 2.4 2 2 0 2 2 2 0 Apolipoprotein A1/A4/E domain CorA PF01544.18 EME70389.1 - 0.31 10.3 2.9 5.8 6.1 0.3 2.7 1 1 1 3 3 3 0 CorA-like Mg2+ transporter protein FUSC PF04632.12 EME70389.1 - 0.62 8.5 8.7 0.86 8.1 8.7 1.3 1 0 0 1 1 1 0 Fusaric acid resistance protein family Lactamase_B PF00753.27 EME70390.1 - 7.8e-14 52.1 0.0 9.6e-14 51.8 0.0 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 EME70390.1 - 0.089 12.3 0.0 0.13 11.7 0.0 1.2 1 0 0 1 1 1 0 Beta-lactamase superfamily domain Head-tail_con PF12236.8 EME70393.1 - 5.4e-157 523.1 0.0 6.2e-157 522.9 0.0 1.0 1 0 0 1 1 1 1 Bacteriophage head to tail connecting protein DEC-1_N PF04625.13 EME70394.1 - 0.039 13.0 2.2 0.035 13.1 2.2 1.1 1 0 0 1 1 1 0 DEC-1 protein, N-terminal region Peptidase_S24 PF00717.23 EME70397.1 - 5.1e-18 64.8 0.0 8.2e-18 64.1 0.0 1.3 1 0 0 1 1 1 1 Peptidase S24-like HTH_31 PF13560.6 EME70397.1 - 0.012 15.9 0.7 0.025 14.9 0.1 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_26 PF13443.6 EME70397.1 - 0.014 15.9 0.0 0.039 14.4 0.0 1.9 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain MarR_2 PF12802.7 EME70397.1 - 0.025 14.4 0.0 0.071 13.0 0.0 1.7 1 0 0 1 1 1 0 MarR family HTH_IclR PF09339.10 EME70397.1 - 0.043 13.6 0.2 0.53 10.1 0.2 2.2 2 0 0 2 2 2 0 IclR helix-turn-helix domain BrnA_antitoxin PF14384.6 EME70398.1 - 0.02 15.4 0.4 0.032 14.7 0.4 1.3 1 0 0 1 1 1 0 BrnA antitoxin of type II toxin-antitoxin system adh_short_C2 PF13561.6 EME70399.1 - 5.9e-84 281.3 0.0 6.7e-84 281.1 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 EME70399.1 - 1.3e-23 83.5 0.0 1.7e-23 83.1 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase Enoyl_reductase PF12241.8 EME70399.1 - 0.01 15.2 0.0 0.12 11.7 0.0 2.0 2 0 0 2 2 2 0 Trans-2-enoyl-CoA reductase catalytic region KR PF08659.10 EME70399.1 - 0.077 12.9 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 KR domain Cys_Met_Meta_PP PF01053.20 EME70400.1 - 7.8e-132 439.4 0.0 8.7e-132 439.2 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.21 EME70400.1 - 3.1e-10 39.8 0.0 4.5e-10 39.2 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 EME70400.1 - 3.3e-07 29.6 0.0 1.1e-06 27.9 0.0 1.7 2 0 0 2 2 2 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 EME70400.1 - 8.8e-07 28.5 0.2 6.3e-06 25.7 0.3 2.0 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family GDC-P PF02347.16 EME70400.1 - 7e-05 21.8 0.0 0.0001 21.3 0.0 1.2 1 0 0 1 1 1 1 Glycine cleavage system P-protein Met_gamma_lyase PF06838.11 EME70400.1 - 0.075 11.6 0.0 0.49 8.9 0.0 1.9 2 0 0 2 2 2 0 Methionine gamma-lyase DUF525 PF04379.14 EME70401.1 - 9.3e-36 121.9 0.0 1.1e-35 121.7 0.0 1.1 1 0 0 1 1 1 1 ApaG domain GTP_cyclohydroI PF01227.22 EME70402.1 - 2.3e-77 258.5 0.0 2.6e-77 258.3 0.0 1.0 1 0 0 1 1 1 1 GTP cyclohydrolase I QueF PF14489.6 EME70402.1 - 0.00056 20.0 0.0 0.0011 19.1 0.0 1.5 1 0 0 1 1 1 1 QueF-like protein UPF0262 PF06793.12 EME70402.1 - 0.11 12.6 0.2 0.19 11.8 0.2 1.5 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0262) EIF_2_alpha PF07541.12 EME70402.1 - 0.12 12.4 0.0 0.17 12.0 0.0 1.3 1 0 0 1 1 1 0 Eukaryotic translation initiation factor 2 alpha subunit Hydrolase_4 PF12146.8 EME70406.1 - 5.3e-63 212.5 0.0 6.5e-63 212.2 0.0 1.1 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 EME70406.1 - 3.4e-12 46.6 0.2 5.4e-11 42.6 0.3 2.0 1 1 1 2 2 2 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 EME70406.1 - 1.3e-11 45.6 16.5 1.3e-11 45.6 16.5 1.9 1 1 1 2 2 2 1 Alpha/beta hydrolase family Esterase PF00756.20 EME70406.1 - 0.062 12.9 0.5 0.18 11.4 0.3 1.7 2 0 0 2 2 2 0 Putative esterase ABC_tran PF00005.27 EME70407.1 - 8.7e-31 107.3 0.0 1.2e-30 106.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 EME70407.1 - 1.9e-12 47.6 0.6 1.7e-06 28.1 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 EME70407.1 - 7e-05 22.4 0.1 0.1 12.0 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 EME70407.1 - 0.0071 16.1 0.1 0.013 15.2 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 EME70407.1 - 0.017 15.6 0.1 0.028 14.9 0.1 1.2 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 EME70407.1 - 0.023 14.6 0.0 0.054 13.4 0.0 1.6 2 0 0 2 2 2 0 RsgA GTPase CLP1_P PF16575.5 EME70407.1 - 0.043 13.6 0.0 0.063 13.1 0.0 1.3 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop DUF4162 PF13732.6 EME70407.1 - 0.054 14.2 0.0 0.1 13.3 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4162) MMR_HSR1 PF01926.23 EME70407.1 - 0.08 13.0 0.0 0.25 11.4 0.0 1.8 2 1 0 2 2 2 0 50S ribosome-binding GTPase AAA_24 PF13479.6 EME70407.1 - 0.15 11.8 0.0 0.84 9.3 0.0 1.9 2 0 0 2 2 2 0 AAA domain FAD_binding_3 PF01494.19 EME70407.1 - 0.18 11.0 0.0 0.25 10.6 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain zf-CHCC PF10276.9 EME70408.1 - 6.9e-14 51.6 0.2 1.2e-13 50.9 0.2 1.4 1 0 0 1 1 1 1 Zinc-finger domain DNA_pol_A PF00476.20 EME70409.1 - 3.6e-69 233.6 0.0 4.6e-69 233.3 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase family A 5_3_exonuc_N PF02739.16 EME70409.1 - 1e-57 194.5 0.0 1.5e-57 193.9 0.0 1.2 1 0 0 1 1 1 1 5'-3' exonuclease, N-terminal resolvase-like domain DNA_pol_A_exo1 PF01612.20 EME70409.1 - 1.8e-32 112.4 0.0 2.8e-32 111.8 0.0 1.3 1 0 0 1 1 1 1 3'-5' exonuclease 5_3_exonuc PF01367.20 EME70409.1 - 2.3e-32 111.4 0.0 6.8e-32 110.0 0.0 1.9 1 0 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold HHH_2 PF12826.7 EME70409.1 - 0.038 14.1 0.0 0.1 12.7 0.0 1.7 1 0 0 1 1 1 0 Helix-hairpin-helix motif HHH_5 PF14520.6 EME70409.1 - 0.053 14.1 0.0 0.21 12.2 0.0 2.0 1 0 0 1 1 1 0 Helix-hairpin-helix domain Transposase_mut PF00872.18 EME70410.1 - 3.5e-27 95.2 0.4 7.8e-21 74.3 0.0 2.0 1 1 1 2 2 2 2 Transposase, Mutator family Peptidase_C14 PF00656.22 EME70411.1 - 6.2e-07 29.6 0.0 1.1e-06 28.8 0.0 1.4 1 0 0 1 1 1 1 Caspase domain UPF0225 PF17775.1 EME70412.1 - 1.4e-28 99.6 0.0 1.7e-28 99.3 0.0 1.1 1 0 0 1 1 1 1 UPF0225 domain SEC-C PF02810.15 EME70412.1 - 1.4e-17 63.2 20.5 4.2e-11 42.5 10.7 2.2 2 0 0 2 2 2 2 SEC-C motif ParBc PF02195.18 EME70414.1 - 1.7e-25 89.1 0.1 3.9e-25 88.0 0.1 1.6 1 0 0 1 1 1 1 ParB-like nuclease domain HTH_ParB PF17762.1 EME70414.1 - 2.7e-14 52.7 0.0 7.9e-14 51.2 0.0 1.9 1 0 0 1 1 1 1 HTH domain found in ParB protein KorB PF08535.10 EME70414.1 - 0.0003 20.8 0.0 0.032 14.3 0.0 2.7 2 0 0 2 2 2 1 KorB domain HTH_3 PF01381.22 EME70414.1 - 0.00067 19.7 0.0 0.0016 18.4 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix SoPB_HTH PF18090.1 EME70414.1 - 0.0041 17.2 0.0 0.038 14.1 0.0 2.2 1 1 1 2 2 2 1 Centromere-binding protein HTH domain HTH_29 PF13551.6 EME70414.1 - 0.011 15.8 0.1 3 7.9 0.0 3.2 3 0 0 3 3 3 0 Winged helix-turn helix HTH_Crp_2 PF13545.6 EME70414.1 - 0.046 13.7 0.2 0.2 11.6 0.1 2.2 2 1 0 2 2 2 0 Crp-like helix-turn-helix domain TrmB PF01978.19 EME70414.1 - 0.049 13.5 0.0 0.16 11.9 0.0 1.9 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 EME70414.1 - 0.071 12.7 0.1 0.48 10.0 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Latarcin PF10279.9 EME70414.1 - 0.13 12.7 0.6 0.29 11.6 0.6 1.7 1 1 0 1 1 1 0 Latarcin precursor AAA_31 PF13614.6 EME70415.1 - 5.6e-63 212.0 0.0 1.1e-62 211.1 0.0 1.4 2 0 0 2 2 2 1 AAA domain CbiA PF01656.23 EME70415.1 - 4.9e-30 104.2 0.1 1.6e-29 102.6 0.1 1.8 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.11 EME70415.1 - 3.2e-12 46.3 0.3 1.2e-10 41.2 0.3 2.1 1 1 0 1 1 1 1 ATPase MipZ Fer4_NifH PF00142.18 EME70415.1 - 7.5e-12 45.3 0.0 5.9e-06 25.9 0.1 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ParA PF10609.9 EME70415.1 - 8.7e-12 45.0 0.4 7.4e-09 35.4 0.4 2.2 2 0 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase CBP_BcsQ PF06564.12 EME70415.1 - 8.9e-12 45.0 0.0 2.5e-11 43.5 0.0 1.7 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ ArsA_ATPase PF02374.15 EME70415.1 - 2.1e-07 30.5 1.4 1.7e-06 27.5 0.3 2.3 2 1 0 2 2 2 1 Anion-transporting ATPase SRP54 PF00448.22 EME70415.1 - 0.00021 21.0 0.5 0.088 12.4 0.6 2.3 2 0 0 2 2 2 2 SRP54-type protein, GTPase domain VirC1 PF07015.11 EME70415.1 - 0.003 16.9 0.6 0.0067 15.8 0.2 1.6 2 0 0 2 2 2 1 VirC1 protein ATP_bind_1 PF03029.17 EME70415.1 - 0.0031 17.3 0.0 0.2 11.4 0.0 2.3 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein CLP1_P PF16575.5 EME70415.1 - 0.037 13.8 0.0 0.083 12.7 0.0 1.5 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_25 PF13481.6 EME70415.1 - 0.067 12.8 1.0 0.14 11.7 1.0 1.7 1 1 1 2 2 2 0 AAA domain FTHFS PF01268.19 EME70415.1 - 0.075 11.2 0.4 0.12 10.6 0.4 1.2 1 0 0 1 1 1 0 Formate--tetrahydrofolate ligase LpxK PF02606.14 EME70415.1 - 0.088 11.9 0.1 0.12 11.4 0.1 1.1 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase DnaB_C PF03796.15 EME70415.1 - 0.099 12.0 0.0 0.14 11.5 0.0 1.3 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain GidB PF02527.15 EME70416.1 - 5.6e-41 139.9 0.0 6.6e-41 139.7 0.0 1.0 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G MTS PF05175.14 EME70416.1 - 0.00038 20.1 0.0 0.0008 19.0 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.6 EME70416.1 - 0.0037 17.9 0.0 0.0054 17.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 EME70416.1 - 0.0038 17.0 0.0 0.005 16.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 EME70416.1 - 0.081 12.3 0.0 0.1 11.9 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_16 PF10294.9 EME70416.1 - 0.2 11.4 0.0 0.27 11.0 0.0 1.2 1 0 0 1 1 1 0 Lysine methyltransferase GIDA PF01134.22 EME70417.1 - 6e-161 535.9 0.0 7.2e-161 535.7 0.0 1.1 1 0 0 1 1 1 1 Glucose inhibited division protein A GIDA_assoc PF13932.6 EME70417.1 - 7.8e-70 235.3 0.0 1.1e-69 234.9 0.0 1.2 1 0 0 1 1 1 1 GidA associated domain FAD_oxidored PF12831.7 EME70417.1 - 7.2e-08 32.2 3.3 1.2e-07 31.5 3.3 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 EME70417.1 - 4.3e-06 26.1 6.1 0.002 17.3 3.3 2.5 2 0 0 2 2 2 2 FAD binding domain Pyr_redox_2 PF07992.14 EME70417.1 - 6.4e-05 22.3 0.4 0.00015 21.2 0.4 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 EME70417.1 - 0.00079 18.8 2.3 0.0011 18.3 0.9 1.9 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox PF00070.27 EME70417.1 - 0.00083 19.9 0.3 0.0018 18.8 0.3 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 EME70417.1 - 0.028 14.6 0.9 0.084 13.1 0.9 1.8 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain NAD_binding_9 PF13454.6 EME70417.1 - 0.15 12.0 2.0 0.18 11.8 0.1 1.9 2 0 0 2 2 2 0 FAD-NAD(P)-binding Thi4 PF01946.17 EME70417.1 - 0.67 9.2 2.0 4.1 6.6 2.0 2.0 1 1 0 1 1 1 0 Thi4 family HI0933_like PF03486.14 EME70417.1 - 1.4 7.6 4.7 0.43 9.2 1.2 1.9 3 0 0 3 3 3 0 HI0933-like protein MnmE_helical PF12631.7 EME70418.1 - 1.6e-51 175.4 0.1 1.9e-51 175.2 0.1 1.1 1 0 0 1 1 1 1 MnmE helical domain TrmE_N PF10396.9 EME70418.1 - 2.3e-34 118.2 0.0 1.2e-33 115.8 0.0 2.2 3 0 0 3 3 3 1 GTP-binding protein TrmE N-terminus MMR_HSR1 PF01926.23 EME70418.1 - 2.5e-20 72.7 0.0 7.7e-20 71.1 0.0 1.8 2 0 0 2 2 2 1 50S ribosome-binding GTPase FeoB_N PF02421.18 EME70418.1 - 1.8e-07 30.8 0.0 3.8e-07 29.8 0.0 1.6 1 1 0 1 1 1 1 Ferrous iron transport protein B Dynamin_N PF00350.23 EME70418.1 - 5e-06 26.7 0.0 7.6e-06 26.1 0.0 1.3 1 0 0 1 1 1 1 Dynamin family RsgA_GTPase PF03193.16 EME70418.1 - 0.00011 22.2 0.0 0.053 13.4 0.0 2.3 2 0 0 2 2 2 2 RsgA GTPase AAA_28 PF13521.6 EME70418.1 - 0.00019 21.7 0.5 0.00045 20.5 0.0 1.8 2 0 0 2 2 2 1 AAA domain AIG1 PF04548.16 EME70418.1 - 0.012 14.9 0.0 0.017 14.4 0.0 1.2 1 0 0 1 1 1 0 AIG1 family MCM PF00493.23 EME70418.1 - 0.022 13.8 0.0 0.035 13.2 0.0 1.2 1 0 0 1 1 1 0 MCM P-loop domain ABC_tran PF00005.27 EME70418.1 - 0.049 14.1 0.0 0.14 12.7 0.0 1.7 1 0 0 1 1 1 0 ABC transporter cobW PF02492.19 EME70418.1 - 0.091 12.3 0.1 3.6 7.1 0.0 2.3 1 1 1 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Arf PF00025.21 EME70418.1 - 0.11 12.0 0.0 0.47 9.9 0.0 1.9 2 0 0 2 2 2 0 ADP-ribosylation factor family AAA_24 PF13479.6 EME70418.1 - 0.14 11.9 0.0 0.21 11.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain MMR_HSR1_Xtn PF16897.5 EME70418.1 - 0.19 11.8 0.0 1.3 9.0 0.0 2.1 2 0 0 2 2 2 0 C-terminal region of MMR_HSR1 domain 2Fe-2S_thioredx PF01257.19 EME70419.1 - 0.00022 21.1 0.0 0.00029 20.7 0.0 1.3 1 1 0 1 1 1 1 Thioredoxin-like [2Fe-2S] ferredoxin DUF1636 PF07845.11 EME70419.1 - 0.0017 18.7 0.0 0.0021 18.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1636) Suc_Fer-like PF06999.12 EME70419.1 - 0.035 14.0 0.9 0.18 11.7 0.9 1.8 1 1 0 1 1 1 0 Sucrase/ferredoxin-like Thioredox_DsbH PF03190.15 EME70421.1 - 3.7e-70 235.1 0.0 7.8e-70 234.0 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.6 EME70421.1 - 1.9e-06 27.9 0.0 4.1e-06 26.9 0.0 1.6 1 0 0 1 1 1 1 Thioredoxin-like Glyco_hydro_88 PF07470.13 EME70421.1 - 1.3e-05 24.5 0.0 0.3 10.1 0.1 3.2 3 0 0 3 3 3 2 Glycosyl Hydrolase Family 88 Glyco_hydro_76 PF03663.14 EME70421.1 - 3.4e-05 23.5 11.3 0.00031 20.4 2.3 3.8 2 1 2 4 4 4 3 Glycosyl hydrolase family 76 DNA_binding_1 PF01035.20 EME70422.1 - 1.8e-31 108.1 0.0 2.3e-31 107.7 0.0 1.1 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain Methyltransf_1N PF02870.15 EME70422.1 - 7.7e-05 23.4 0.0 0.0013 19.5 0.0 2.2 1 1 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ADH_zinc_N PF00107.26 EME70423.1 - 4.2e-27 94.7 0.0 6.5e-27 94.1 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 EME70423.1 - 5.4e-19 69.6 0.0 8.7e-19 68.9 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 EME70423.1 - 5e-10 39.2 0.0 1.4e-09 37.8 0.0 1.9 1 1 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain Rho_RNA_bind PF07497.12 EME70425.1 - 2.1e-32 110.8 0.0 3.7e-32 110.0 0.0 1.4 1 0 0 1 1 1 1 Rho termination factor, RNA-binding domain ATP-synt_ab PF00006.25 EME70425.1 - 5.1e-23 81.8 0.1 7.1e-23 81.4 0.1 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain Rho_N PF07498.12 EME70425.1 - 1.4e-17 63.3 0.8 4.2e-17 61.8 0.8 1.9 1 0 0 1 1 1 1 Rho termination factor, N-terminal domain AAA_25 PF13481.6 EME70425.1 - 0.00033 20.3 0.1 0.0015 18.1 0.1 2.1 1 1 0 1 1 1 1 AAA domain OB_RNB PF08206.11 EME70425.1 - 0.0011 18.6 0.0 0.0024 17.5 0.0 1.5 1 0 0 1 1 1 1 Ribonuclease B OB domain AAA_22 PF13401.6 EME70425.1 - 0.0016 18.7 0.0 0.016 15.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain NACHT PF05729.12 EME70425.1 - 0.0085 16.0 0.0 0.015 15.2 0.0 1.3 1 0 0 1 1 1 1 NACHT domain AAA PF00004.29 EME70425.1 - 0.017 15.6 0.0 0.038 14.4 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.6 EME70425.1 - 0.09 12.8 0.1 1 9.4 0.0 2.5 2 1 0 2 2 2 0 AAA domain Terminase_GpA PF05876.12 EME70425.1 - 0.19 10.2 0.0 13 4.2 0.0 2.1 2 0 0 2 2 2 0 Phage terminase large subunit (GpA) UPF0093 PF03653.13 EME70426.1 - 3e-59 199.4 4.4 3.4e-59 199.3 4.4 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0093) CopD PF05425.13 EME70426.1 - 6.5e-05 23.3 2.7 6.5e-05 23.3 2.7 1.9 1 1 1 2 2 2 1 Copper resistance protein D 7TM_GPCR_Srh PF10318.9 EME70426.1 - 0.012 14.7 1.2 0.35 9.8 0.5 2.0 1 1 1 2 2 2 0 Serpentine type 7TM GPCR chemoreceptor Srh DUF4229 PF14012.6 EME70426.1 - 0.027 14.6 0.1 0.027 14.6 0.1 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF4229) DUF4519 PF15012.6 EME70426.1 - 0.19 11.9 0.4 0.19 11.9 0.4 2.1 2 1 0 2 2 2 0 Domain of unknown function (DUF4519) COX6C PF02937.15 EME70426.1 - 0.32 11.2 4.6 0.32 11.1 0.3 2.8 1 1 2 3 3 3 0 Cytochrome c oxidase subunit VIc Ferrochelatase PF00762.19 EME70427.1 - 2.9e-104 348.6 0.0 3.2e-104 348.4 0.0 1.0 1 0 0 1 1 1 1 Ferrochelatase CbiX PF01903.17 EME70427.1 - 0.015 15.6 0.1 14 6.1 0.0 2.9 2 1 0 3 3 3 0 CbiX TRI12 PF06609.13 EME70427.1 - 0.14 10.6 0.0 0.2 10.1 0.0 1.1 1 0 0 1 1 1 0 Fungal trichothecene efflux pump (TRI12) URO-D PF01208.17 EME70428.1 - 4.9e-116 387.7 0.0 5.5e-116 387.5 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) Kinase-PPPase PF03618.14 EME70429.1 - 2.9e-92 309.1 0.0 3.3e-92 308.9 0.0 1.0 1 0 0 1 1 1 1 Kinase/pyrophosphorylase ALGX PF16822.5 EME70429.1 - 0.11 12.2 0.1 1.4 8.6 0.0 2.3 2 1 1 3 3 3 0 SGNH hydrolase-like domain, acetyltransferase AlgX Maf PF02545.14 EME70430.1 - 5.2e-35 120.7 0.0 5.8e-35 120.6 0.0 1.0 1 0 0 1 1 1 1 Maf-like protein Shikimate_dh_N PF08501.11 EME70431.1 - 8.2e-26 90.1 0.0 1.4e-25 89.4 0.0 1.4 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain SDH_C PF18317.1 EME70431.1 - 2.3e-07 30.5 0.1 6e-07 29.1 0.1 1.7 1 0 0 1 1 1 1 Shikimate 5'-dehydrogenase C-terminal domain Shikimate_DH PF01488.20 EME70431.1 - 7.9e-07 29.2 0.0 1.3e-06 28.5 0.0 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.17 EME70431.1 - 0.025 15.2 0.1 0.044 14.4 0.1 1.4 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Sacchrp_dh_NADP PF03435.18 EME70431.1 - 0.037 14.3 0.1 0.071 13.4 0.1 1.5 2 0 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain CoaE PF01121.20 EME70432.1 - 4.6e-38 130.7 0.0 5.7e-38 130.4 0.0 1.0 1 0 0 1 1 1 1 Dephospho-CoA kinase RNase_T PF00929.24 EME70433.1 - 4.4e-33 115.2 0.0 5.5e-33 114.9 0.0 1.1 1 0 0 1 1 1 1 Exonuclease DNA_pol_A_exo1 PF01612.20 EME70433.1 - 0.00084 19.1 0.0 0.0035 17.1 0.0 1.9 1 1 0 1 1 1 1 3'-5' exonuclease RNase_H_2 PF13482.6 EME70433.1 - 0.0039 17.2 0.0 0.02 14.9 0.0 2.0 1 1 0 1 1 1 1 RNase_H superfamily Amidohydro_3 PF07969.11 EME70433.1 - 0.062 12.8 0.0 0.08 12.4 0.0 1.1 1 0 0 1 1 1 0 Amidohydrolase family SecB PF02556.14 EME70434.1 - 3.5e-51 172.8 0.0 4.2e-51 172.6 0.0 1.0 1 0 0 1 1 1 1 Preprotein translocase subunit SecB FxsA PF04186.13 EME70435.1 - 2.2e-26 92.1 12.4 2.7e-26 91.8 12.4 1.1 1 0 0 1 1 1 1 FxsA cytoplasmic membrane protein Tim44 PF04280.15 EME70436.1 - 4.7e-49 166.3 0.0 5.6e-49 166.0 0.0 1.1 1 0 0 1 1 1 1 Tim44-like domain MltA PF03562.17 EME70437.1 - 1.8e-74 250.3 0.0 2.1e-74 250.1 0.0 1.1 1 0 0 1 1 1 1 MltA specific insert domain 3D PF06725.11 EME70437.1 - 1.8e-21 76.1 0.0 3.9e-21 75.0 0.0 1.6 1 0 0 1 1 1 1 3D domain Smr PF01713.21 EME70439.1 - 5.3e-25 87.6 0.1 7.8e-25 87.0 0.1 1.3 1 0 0 1 1 1 1 Smr domain HTH_31 PF13560.6 EME70440.1 - 4.1e-10 39.9 1.8 2.3e-09 37.4 0.4 2.4 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_19 PF12844.7 EME70440.1 - 9.5e-09 35.2 0.0 3.4e-08 33.4 0.0 1.9 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_3 PF01381.22 EME70440.1 - 1.4e-08 34.7 0.1 1.3e-07 31.5 0.0 2.4 3 0 0 3 3 3 1 Helix-turn-helix HTH_25 PF13413.6 EME70440.1 - 3.5e-06 26.8 0.2 8e-06 25.6 0.2 1.7 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 EME70440.1 - 0.00014 22.2 0.0 0.0003 21.2 0.0 1.6 1 1 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_37 PF13744.6 EME70440.1 - 0.076 13.0 0.0 0.39 10.7 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain cNMP_binding PF00027.29 EME70441.1 - 1.7e-17 63.3 0.0 2.7e-17 62.6 0.0 1.4 1 0 0 1 1 1 1 Cyclic nucleotide-binding domain HTH_Crp_2 PF13545.6 EME70441.1 - 0.0015 18.5 1.2 0.002 18.0 0.1 1.8 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain DUF2917 PF11142.8 EME70441.1 - 0.09 12.2 0.7 35 3.9 0.0 3.3 3 0 0 3 3 3 0 Protein of unknown function (DUF2917) Metal_resist PF13801.6 EME70442.1 - 0.00011 22.4 13.2 0.00025 21.2 13.2 1.7 1 1 0 1 1 1 1 Heavy-metal resistance LTXXQ PF07813.12 EME70442.1 - 0.003 18.2 0.2 0.0044 17.7 0.2 1.2 1 0 0 1 1 1 1 LTXXQ motif family protein AAA_2 PF07724.14 EME70443.1 - 1.8e-44 151.9 0.0 1.5e-36 126.0 0.0 2.3 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA PF00004.29 EME70443.1 - 4.7e-15 56.2 0.0 4e-06 27.3 0.0 2.9 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 EME70443.1 - 3.2e-07 30.4 0.1 1.2e-05 25.3 0.0 2.5 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) ClpB_D2-small PF10431.9 EME70443.1 - 4.2e-06 26.7 1.6 1.4e-05 25.0 0.1 2.4 2 0 0 2 2 2 1 C-terminal, D2-small domain, of ClpB protein AAA_16 PF13191.6 EME70443.1 - 6.8e-06 26.6 1.9 0.00026 21.4 0.4 2.4 2 1 0 2 2 2 1 AAA ATPase domain MCM PF00493.23 EME70443.1 - 1.1e-05 24.7 0.0 0.004 16.3 0.0 2.3 2 0 0 2 2 2 2 MCM P-loop domain RuvB_N PF05496.12 EME70443.1 - 2e-05 24.4 0.1 0.0025 17.6 0.0 2.7 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 EME70443.1 - 2.4e-05 24.6 0.1 0.0002 21.7 0.0 2.5 2 0 0 2 2 2 1 AAA domain Mg_chelatase PF01078.21 EME70443.1 - 0.00023 20.6 0.0 0.0063 15.9 0.0 2.8 3 0 0 3 3 3 1 Magnesium chelatase, subunit ChlI AAA_33 PF13671.6 EME70443.1 - 0.00075 19.7 0.1 0.0017 18.5 0.1 1.6 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 EME70443.1 - 0.0029 18.2 0.0 0.0074 16.8 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.6 EME70443.1 - 0.0071 16.6 0.1 0.015 15.6 0.1 1.5 1 0 0 1 1 1 1 AAA domain Sigma54_activat PF00158.26 EME70443.1 - 0.0078 15.9 0.0 0.11 12.2 0.0 2.3 2 0 0 2 2 2 1 Sigma-54 interaction domain TniB PF05621.11 EME70443.1 - 0.022 14.2 0.3 0.061 12.7 0.0 1.9 2 1 0 2 2 2 0 Bacterial TniB protein IstB_IS21 PF01695.17 EME70443.1 - 0.023 14.4 0.0 0.049 13.4 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein SRP54 PF00448.22 EME70443.1 - 0.025 14.2 0.2 0.062 12.9 0.2 1.7 1 1 0 1 1 1 0 SRP54-type protein, GTPase domain NACHT PF05729.12 EME70443.1 - 0.041 13.8 0.0 0.9 9.4 0.0 2.8 2 1 1 3 3 3 0 NACHT domain TIP49 PF06068.13 EME70443.1 - 0.05 12.8 0.1 0.09 12.0 0.1 1.4 1 0 0 1 1 1 0 TIP49 P-loop domain AAA_7 PF12775.7 EME70443.1 - 0.072 12.6 0.0 0.22 11.0 0.0 1.7 2 0 0 2 2 2 0 P-loop containing dynein motor region TsaE PF02367.17 EME70443.1 - 0.076 13.0 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ATP-synt_ab PF00006.25 EME70443.1 - 0.13 11.9 0.0 0.22 11.2 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_24 PF13479.6 EME70443.1 - 0.17 11.6 0.0 0.31 10.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain DEAD PF00270.29 EME70443.1 - 0.27 11.0 1.2 0.5 10.1 0.1 2.0 2 1 0 2 2 2 0 DEAD/DEAH box helicase Proteasome PF00227.26 EME70444.1 - 2.3e-23 82.7 1.7 6.7e-23 81.2 1.7 1.6 1 1 0 1 1 1 1 Proteasome subunit Peptidase_M48 PF01435.18 EME70445.1 - 1.9e-16 60.4 0.2 2.7e-16 59.9 0.2 1.2 1 0 0 1 1 1 1 Peptidase family M48 PDZ_2 PF13180.6 EME70445.1 - 0.00078 19.7 0.0 0.0022 18.3 0.0 1.7 1 0 0 1 1 1 1 PDZ domain PDZ_6 PF17820.1 EME70445.1 - 0.002 18.0 0.6 0.03 14.2 0.2 2.8 2 0 0 2 2 2 1 PDZ domain PDZ PF00595.24 EME70445.1 - 0.042 14.2 0.0 0.096 13.1 0.0 1.6 1 0 0 1 1 1 0 PDZ domain HATPase_c_2 PF13581.6 EME70445.1 - 0.095 12.7 0.0 0.3 11.0 0.0 1.8 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain PhageMin_Tail PF10145.9 EME70445.1 - 0.1 12.4 1.9 0.19 11.5 1.9 1.5 1 0 0 1 1 1 0 Phage-related minor tail protein IGPD PF00475.18 EME70446.1 - 8.3e-68 227.2 0.2 1.5e-67 226.4 0.2 1.4 2 0 0 2 2 2 1 Imidazoleglycerol-phosphate dehydratase GATase PF00117.28 EME70447.1 - 4.3e-21 75.6 0.0 5.3e-21 75.3 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 EME70447.1 - 1.8e-05 24.6 1.2 0.0017 18.1 0.1 2.4 3 0 0 3 3 3 2 Peptidase C26 SNO PF01174.19 EME70447.1 - 0.00026 20.9 0.0 0.011 15.6 0.0 2.4 1 1 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.14 EME70447.1 - 0.0096 15.5 0.1 0.012 15.2 0.1 1.4 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase_5 PF13507.6 EME70447.1 - 0.062 12.4 0.1 0.1 11.7 0.1 1.3 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain His_biosynth PF00977.21 EME70448.1 - 4.1e-77 258.7 0.3 4.7e-77 258.5 0.3 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.17 EME70448.1 - 1.3e-09 37.6 0.1 0.00024 20.3 0.0 2.2 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NMO PF03060.15 EME70448.1 - 0.0058 16.1 5.0 0.14 11.5 0.2 2.1 2 0 0 2 2 2 2 Nitronate monooxygenase DUF561 PF04481.12 EME70448.1 - 0.18 10.9 0.1 0.35 10.0 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF561) His_biosynth PF00977.21 EME70449.1 - 2.2e-91 305.4 0.5 2.5e-91 305.2 0.5 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein NMO PF03060.15 EME70449.1 - 0.00024 20.6 4.1 0.035 13.5 1.2 2.1 1 1 0 2 2 2 2 Nitronate monooxygenase ThiG PF05690.14 EME70449.1 - 0.00045 19.6 2.0 0.12 11.6 0.5 2.2 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG IMPDH PF00478.25 EME70449.1 - 0.00067 18.8 3.7 0.32 10.0 0.1 2.1 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain TMP-TENI PF02581.17 EME70449.1 - 0.0024 17.2 0.1 1.6 8.1 0.1 2.3 2 0 0 2 2 2 2 Thiamine monophosphate synthase G3P_antiterm PF04309.12 EME70449.1 - 0.0054 16.2 0.1 0.18 11.2 0.0 2.2 2 0 0 2 2 2 1 Glycerol-3-phosphate responsive antiterminator Dus PF01207.17 EME70449.1 - 0.02 14.0 0.1 1 8.4 0.0 2.1 1 1 1 2 2 2 0 Dihydrouridine synthase (Dus) DHO_dh PF01180.21 EME70449.1 - 0.026 13.7 0.1 6.2 5.9 0.0 2.1 2 0 0 2 2 2 0 Dihydroorotate dehydrogenase PRA-PH PF01503.17 EME70450.1 - 9.8e-19 67.6 0.0 1.1e-18 67.4 0.0 1.1 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase HIT PF01230.23 EME70451.1 - 3e-25 88.8 0.0 3.5e-25 88.6 0.0 1.1 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 EME70451.1 - 1.8e-14 54.2 0.0 2.2e-14 53.9 0.0 1.1 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding Mg_chelatase PF01078.21 EME70453.1 - 5.9e-82 274.1 0.0 9.6e-82 273.4 0.0 1.3 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI Mg_chelatase_C PF13335.6 EME70453.1 - 9.4e-29 99.9 6.1 1.6e-28 99.2 6.1 1.3 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI C-terminal AAA_5 PF07728.14 EME70453.1 - 6.9e-08 32.6 0.0 1.8e-07 31.2 0.0 1.7 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) MCM PF00493.23 EME70453.1 - 9.1e-07 28.2 0.0 2.8e-06 26.6 0.0 1.8 1 1 0 1 1 1 1 MCM P-loop domain Sigma54_activat PF00158.26 EME70453.1 - 2.3e-05 24.2 0.0 0.003 17.3 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_33 PF13671.6 EME70453.1 - 0.0088 16.2 0.1 0.028 14.6 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 EME70453.1 - 0.023 15.0 0.0 0.09 13.0 0.0 2.0 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 EME70453.1 - 0.028 14.8 0.0 0.11 13.0 0.0 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 EME70453.1 - 0.16 11.9 0.0 0.27 11.1 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_32 PF13654.6 EME70453.1 - 0.33 9.7 0.2 0.94 8.2 0.1 1.8 3 0 0 3 3 3 0 AAA domain DUF3780 PF12635.7 EME70454.1 - 0.043 13.6 0.0 0.082 12.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3780) PLDc_2 PF13091.6 EME70455.1 - 4.7e-26 91.2 0.6 5.5e-26 91.0 0.6 1.1 1 0 0 1 1 1 1 PLD-like domain FAM83 PF07894.12 EME70455.1 - 9.2e-09 35.2 0.1 0.0011 18.6 0.0 2.0 2 0 0 2 2 2 2 FAM83 A-H PLDc PF00614.22 EME70455.1 - 0.0019 18.3 0.1 0.0046 17.1 0.0 1.7 1 1 1 2 2 2 1 Phospholipase D Active site motif Regulator_TrmB PF11495.8 EME70455.1 - 0.0081 15.4 0.3 0.01 15.0 0.3 1.2 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB ICEA PF05315.11 EME70456.1 - 0.046 13.2 0.0 0.086 12.3 0.0 1.5 1 1 0 1 1 1 0 ICEA Protein Apolipoprotein PF01442.18 EME70456.1 - 0.33 10.8 22.5 0.49 10.3 2.4 2.6 1 1 1 2 2 2 0 Apolipoprotein A1/A4/E domain hnRNP_Q_AcD PF18360.1 EME70456.1 - 0.65 10.0 3.0 2.7 8.0 0.2 3.0 3 0 0 3 3 3 0 Heterogeneous nuclear ribonucleoprotein Q acidic domain Response_reg PF00072.24 EME70457.1 - 9.1e-23 80.6 0.0 1.3e-22 80.1 0.0 1.2 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 EME70457.1 - 1.5e-14 53.8 0.0 2.6e-14 53.0 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal PSD2 PF07624.11 EME70457.1 - 0.0058 16.4 0.0 0.012 15.4 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1585) RQC PF09382.10 EME70458.1 - 0.086 12.6 0.0 0.1 12.4 0.0 1.1 1 0 0 1 1 1 0 RQC domain Resolvase PF00239.21 EME70459.1 - 6.8e-29 100.9 0.4 9.3e-29 100.4 0.4 1.2 1 0 0 1 1 1 1 Resolvase, N terminal domain Recombinase PF07508.13 EME70459.1 - 0.0027 18.1 0.0 0.005 17.2 0.0 1.5 1 1 0 1 1 1 1 Recombinase MarR_2 PF12802.7 EME70461.1 - 0.013 15.4 0.3 0.044 13.7 0.3 1.9 1 0 0 1 1 1 0 MarR family Cro PF09048.10 EME70461.1 - 0.14 12.2 0.4 0.23 11.5 0.4 1.4 1 0 0 1 1 1 0 Cro UPF0175 PF03683.13 EME70461.1 - 0.22 11.3 0.9 0.69 9.7 0.2 2.1 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0175) DUF3338 PF11819.8 EME70462.1 - 0.12 12.4 5.9 0.15 12.0 5.9 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3338) DUF4748 PF15932.5 EME70462.1 - 0.17 11.7 0.5 0.17 11.7 0.5 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF4748) DUF572 PF04502.13 EME70462.1 - 0.24 11.0 3.2 0.28 10.8 3.2 1.0 1 0 0 1 1 1 0 Family of unknown function (DUF572) CCSAP PF15748.5 EME70462.1 - 1.6 8.9 8.6 1.4 9.1 8.0 1.2 1 1 0 1 1 1 0 Centriole, cilia and spindle-associated Resolvase PF00239.21 EME70465.1 - 2.6e-22 79.5 0.1 2.6e-22 79.5 0.1 2.1 3 0 0 3 3 3 1 Resolvase, N terminal domain Recombinase PF07508.13 EME70465.1 - 3.3e-11 43.5 0.0 1.7e-10 41.2 0.0 2.1 1 1 0 1 1 1 1 Recombinase Zn_ribbon_recom PF13408.6 EME70465.1 - 2.6e-08 34.2 2.4 5.1e-08 33.3 2.4 1.5 1 0 0 1 1 1 1 Recombinase zinc beta ribbon domain ChlI PF13541.6 EME70466.1 - 1.8e-40 137.6 0.0 2.6e-40 137.0 0.0 1.2 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase Mg_chelatase PF01078.21 EME70466.1 - 1.1e-07 31.5 0.0 1.4e-07 31.1 0.0 1.3 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI GSH-S_ATP PF02955.16 EME70468.1 - 2.3e-72 242.1 0.0 3.6e-72 241.4 0.0 1.3 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain GSH-S_N PF02951.14 EME70468.1 - 3e-44 149.9 0.2 4.4e-44 149.4 0.2 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, N-terminal domain RimK PF08443.11 EME70468.1 - 2.7e-15 56.5 0.0 4.7e-15 55.7 0.0 1.4 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATPgrasp_YheCD PF14398.6 EME70468.1 - 7.1e-05 22.2 0.0 0.0015 17.9 0.0 2.3 2 1 0 2 2 2 1 YheC/D like ATP-grasp GSP_synth PF03738.14 EME70468.1 - 0.19 10.8 0.0 0.31 10.2 0.0 1.2 1 0 0 1 1 1 0 Glutathionylspermidine synthase preATP-grasp Transglut_core2 PF13369.6 EME70469.1 - 4.4e-34 117.3 0.1 4.4e-34 117.3 0.1 1.9 3 0 0 3 3 3 1 Transglutaminase-like superfamily TPR_9 PF13371.6 EME70469.1 - 3.8e-15 55.8 5.2 3.8e-15 55.8 5.2 2.3 2 0 0 2 2 2 1 Tetratricopeptide repeat BON PF04972.17 EME70470.1 - 1.1e-21 76.9 10.2 4.5e-11 42.9 1.3 2.6 2 1 1 3 3 3 2 BON domain B3_4 PF03483.17 EME70470.1 - 0.049 13.3 0.0 0.08 12.6 0.0 1.3 1 0 0 1 1 1 0 B3/4 domain UPF0102 PF02021.17 EME70471.1 - 2.3e-17 63.0 0.0 2.8e-17 62.7 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0102 Hjc PF01870.18 EME70471.1 - 0.017 15.1 0.1 0.027 14.5 0.1 1.4 1 1 0 1 1 1 0 Archaeal holliday junction resolvase (hjc) Mrr_cat PF04471.12 EME70471.1 - 0.074 13.1 0.0 0.093 12.8 0.0 1.1 1 0 0 1 1 1 0 Restriction endonuclease NERD PF08378.11 EME70471.1 - 0.09 13.2 0.0 0.11 12.9 0.0 1.2 1 0 0 1 1 1 0 Nuclease-related domain AHJR-like PF18743.1 EME70471.1 - 0.22 11.1 0.0 0.35 10.4 0.0 1.3 1 0 0 1 1 1 0 REase_AHJR-like TP_methylase PF00590.20 EME70472.1 - 1.3e-27 97.1 1.5 2.2e-27 96.4 1.5 1.3 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Peripla_BP_6 PF13458.6 EME70473.1 - 3.2e-29 102.7 12.4 7.1e-26 91.7 9.2 2.0 2 0 0 2 2 2 2 Periplasmic binding protein LppC PF04348.13 EME70473.1 - 1.6e-14 53.7 1.8 2e-14 53.3 1.8 1.1 1 0 0 1 1 1 1 LppC putative lipoprotein ANF_receptor PF01094.28 EME70473.1 - 2e-06 27.2 0.0 3.9e-06 26.2 0.0 1.4 1 1 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_3 PF13377.6 EME70473.1 - 0.034 14.5 0.0 0.09 13.1 0.0 1.8 1 0 0 1 1 1 0 Periplasmic binding protein-like domain Radical_SAM PF04055.21 EME70474.1 - 1.3e-19 71.2 0.0 1.9e-19 70.6 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily HemN_C PF06969.16 EME70474.1 - 2.8e-12 46.5 0.3 6.3e-12 45.4 0.3 1.6 1 0 0 1 1 1 1 HemN C-terminal domain Fer4_14 PF13394.6 EME70474.1 - 0.03 14.5 0.0 0.052 13.7 0.0 1.4 1 0 0 1 1 1 0 4Fe-4S single cluster domain Ham1p_like PF01725.16 EME70475.1 - 9.5e-62 208.3 0.0 1.1e-61 208.1 0.0 1.0 1 0 0 1 1 1 1 Ham1 family RNase_PH PF01138.21 EME70476.1 - 6.9e-24 84.8 0.1 1.4e-23 83.8 0.0 1.5 2 0 0 2 2 2 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 EME70476.1 - 4.1e-09 36.3 0.0 8.1e-09 35.4 0.0 1.5 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 HrcA PF01628.21 EME70477.1 - 1.4e-55 188.6 0.0 1.9e-55 188.2 0.0 1.2 1 0 0 1 1 1 1 HrcA protein C terminal domain HrcA_DNA-bdg PF03444.15 EME70477.1 - 0.00093 18.8 0.0 0.002 17.7 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding LexA_DNA_bind PF01726.16 EME70477.1 - 0.036 13.8 0.0 0.068 12.9 0.0 1.4 1 0 0 1 1 1 0 LexA DNA binding domain HTH_11 PF08279.12 EME70477.1 - 0.05 13.5 0.0 0.14 12.1 0.0 1.7 1 0 0 1 1 1 0 HTH domain DUF2111 PF09884.9 EME70477.1 - 0.059 13.4 0.1 0.2 11.8 0.1 1.8 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2111) GrpE PF01025.19 EME70478.1 - 7.5e-51 172.1 0.3 8.5e-51 171.9 0.3 1.0 1 0 0 1 1 1 1 GrpE Dynamitin PF04912.14 EME70478.1 - 0.0091 15.4 1.9 0.011 15.1 1.9 1.1 1 0 0 1 1 1 1 Dynamitin DUF5098 PF17023.5 EME70478.1 - 0.11 11.5 0.2 0.13 11.2 0.2 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF5098) Anillin_N PF16018.5 EME70478.1 - 0.15 12.7 1.4 1 10.0 1.1 2.3 2 1 0 2 2 2 0 Anillin N-terminus DUF2894 PF11445.8 EME70478.1 - 0.91 10.0 7.3 1.3 9.4 7.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2894) eIF3_subunit PF08597.10 EME70478.1 - 1.7 8.5 6.4 2.2 8.1 6.4 1.1 1 0 0 1 1 1 0 Translation initiation factor eIF3 subunit HTH_3 PF01381.22 EME70479.1 - 1.1e-14 54.2 0.1 1.5e-14 53.8 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 EME70479.1 - 1.1e-09 38.5 3.7 1.8e-09 37.8 3.7 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain 2TM PF13239.6 EME70479.1 - 1.9e-09 37.7 0.0 3.3e-09 36.9 0.0 1.3 1 0 0 1 1 1 1 2TM domain HTH_26 PF13443.6 EME70479.1 - 6.1e-07 29.8 0.0 9.5e-07 29.2 0.0 1.3 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_25 PF13413.6 EME70479.1 - 7e-07 29.0 0.5 1.1e-06 28.4 0.5 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 EME70479.1 - 6.1e-06 26.2 0.0 8.5e-06 25.7 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.6 EME70479.1 - 0.0017 18.3 0.3 0.0024 17.8 0.3 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 EME70479.1 - 0.0053 16.3 0.1 0.057 12.9 0.2 2.1 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_23 PF13384.6 EME70479.1 - 0.0059 16.4 0.4 0.0059 16.4 0.4 2.3 2 1 1 3 3 3 1 Homeodomain-like domain BetR PF08667.10 EME70479.1 - 0.047 13.7 0.0 0.067 13.2 0.0 1.2 1 0 0 1 1 1 0 BetR domain HHH_5 PF14520.6 EME70479.1 - 0.059 14.0 0.4 0.1 13.2 0.0 1.6 2 0 0 2 2 1 0 Helix-hairpin-helix domain Vir_act_alpha_C PF10400.9 EME70479.1 - 0.074 13.7 0.5 0.12 13.0 0.5 1.5 1 1 0 1 1 1 0 Virulence activator alpha C-term MerR PF00376.23 EME70479.1 - 0.14 12.0 0.0 0.47 10.3 0.0 2.0 1 0 0 1 1 1 0 MerR family regulatory protein HTH_32 PF13565.6 EME70479.1 - 0.19 12.4 0.7 0.19 12.4 0.7 1.8 2 0 0 2 2 2 0 Homeodomain-like domain HTH_11 PF08279.12 EME70479.1 - 0.38 10.7 1.8 0.41 10.6 0.2 1.8 2 0 0 2 2 2 0 HTH domain DapB_C PF05173.14 EME70481.1 - 5.9e-44 149.0 0.0 9.6e-44 148.3 0.0 1.3 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, C-terminus DapB_N PF01113.20 EME70481.1 - 2.7e-36 124.4 0.0 4.5e-36 123.7 0.0 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus EAL PF00563.20 EME70482.1 - 3.9e-73 245.9 0.0 6.2e-73 245.2 0.0 1.3 1 0 0 1 1 1 1 EAL domain GGDEF PF00990.21 EME70482.1 - 3.7e-48 163.3 0.0 7.7e-48 162.3 0.0 1.5 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain PAS_9 PF13426.7 EME70482.1 - 9.4e-23 80.5 0.0 6.9e-11 42.3 0.0 2.4 2 0 0 2 2 2 2 PAS domain PAS_8 PF13188.7 EME70482.1 - 8.6e-19 67.1 0.5 6.7e-09 35.6 0.0 3.5 3 0 0 3 3 3 2 PAS domain PAS PF00989.25 EME70482.1 - 4.9e-17 62.0 0.0 3.2e-08 33.6 0.0 2.8 2 1 0 2 2 2 2 PAS fold PAS_4 PF08448.10 EME70482.1 - 2.2e-14 53.6 3.5 3e-06 27.4 0.3 3.0 2 1 0 2 2 2 2 PAS fold PAS_3 PF08447.12 EME70482.1 - 1.3e-12 47.9 0.0 6.6e-08 32.7 0.0 2.6 2 0 0 2 2 2 2 PAS fold PAS_7 PF12860.7 EME70482.1 - 0.00064 19.9 0.0 0.2 11.8 0.0 3.3 2 1 0 2 2 2 1 PAS fold MLTR_LBD PF17765.1 EME70482.1 - 0.023 14.8 0.7 7.6 6.6 0.1 2.6 2 0 0 2 2 2 0 MmyB-like transcription regulator ligand binding domain PAS_12 PF18095.1 EME70482.1 - 0.099 12.3 0.0 0.18 11.4 0.0 1.3 1 0 0 1 1 1 0 UPF0242 C-terminal PAS-like domain DUF3426 PF11906.8 EME70483.1 - 1.5e-18 67.4 0.2 3.6e-18 66.1 0.2 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF3426) zinc_ribbon_4 PF13717.6 EME70483.1 - 6.9e-14 51.5 0.3 1.1e-13 50.8 0.3 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_5 PF13719.6 EME70483.1 - 2.2e-10 40.1 0.5 4e-10 39.3 0.5 1.4 1 0 0 1 1 1 1 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 EME70483.1 - 0.14 12.2 0.3 0.22 11.5 0.3 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain DUF4366 PF14283.6 EME70483.1 - 0.15 12.1 0.1 1.8 8.6 0.0 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF4366) TFIIS_C PF01096.18 EME70483.1 - 1.5 8.7 4.2 12 5.9 1.0 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DUF4175 PF13779.6 EME70484.1 - 5.4e-189 630.0 46.3 6.3e-189 629.7 46.3 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4175) SesA PF17107.5 EME70484.1 - 0.00055 20.1 0.4 0.49 10.6 0.0 2.6 2 1 0 2 2 2 2 N-terminal domain on NACHT_NTPase and P-loop NTPases YfdX PF10938.8 EME70484.1 - 0.0077 16.2 0.5 0.13 12.2 0.1 2.6 2 0 0 2 2 2 1 YfdX protein DUF4795 PF16043.5 EME70484.1 - 0.17 11.4 1.4 0.91 9.1 0.8 2.2 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) DUF4131 PF13567.6 EME70484.1 - 0.33 10.6 5.3 0.66 9.6 3.7 2.2 3 0 0 3 3 3 0 Domain of unknown function (DUF4131) 7TMR-HDED PF07697.11 EME70484.1 - 0.4 10.8 5.7 6.1 6.9 5.7 2.2 1 1 0 1 1 1 0 7TM-HD extracellular DUF2564 PF10819.8 EME70484.1 - 1.5 9.3 6.7 0.18 12.2 0.7 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF2564) Orn_Arg_deC_N PF02784.16 EME70485.1 - 2e-60 204.2 0.0 7.4e-60 202.4 0.0 1.7 1 1 1 2 2 2 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.22 EME70485.1 - 1.3e-28 99.1 0.0 1.5e-28 98.9 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Ala_racemase_N PF01168.20 EME70485.1 - 1.9e-10 40.8 0.1 3.3e-10 40.0 0.1 1.3 1 0 0 1 1 1 1 Alanine racemase, N-terminal domain LPAM_2 PF13627.6 EME70486.1 - 1.1e-05 25.1 0.1 1.5e-05 24.7 0.1 1.2 1 0 0 1 1 1 1 Prokaryotic lipoprotein-attachment site Lyase_1 PF00206.20 EME70487.1 - 1.3e-80 271.2 0.0 1.7e-80 270.7 0.0 1.2 1 0 0 1 1 1 1 Lyase ASL_C2 PF14698.6 EME70487.1 - 5.9e-22 78.2 0.0 1.5e-21 76.9 0.0 1.8 1 0 0 1 1 1 1 Argininosuccinate lyase C-terminal SnoaL_4 PF13577.6 EME70487.1 - 0.073 13.2 0.4 0.2 11.8 0.0 1.9 2 0 0 2 2 2 0 SnoaL-like domain MFS_1 PF07690.16 EME70488.1 - 1e-19 70.7 63.9 2.7e-19 69.3 46.2 2.3 1 1 1 2 2 2 2 Major Facilitator Superfamily Acatn PF13000.7 EME70488.1 - 7.8e-14 51.1 8.9 3.1e-12 45.8 5.4 2.3 1 1 1 2 2 2 2 Acetyl-coenzyme A transporter 1 AlaDh_PNT_C PF01262.21 EME70489.1 - 5.8e-81 270.9 3.2 5.8e-81 270.9 3.2 1.5 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain AlaDh_PNT_N PF05222.15 EME70489.1 - 1.6e-47 161.2 0.2 2.7e-47 160.5 0.2 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, N-terminal domain Shikimate_DH PF01488.20 EME70489.1 - 2e-06 27.9 0.1 4.4e-06 26.8 0.0 1.5 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase 2-Hacid_dh_C PF02826.19 EME70489.1 - 8.7e-05 21.9 0.1 0.00019 20.9 0.1 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 EME70489.1 - 0.0046 17.2 0.2 0.018 15.3 0.2 2.0 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain THF_DHG_CYH_C PF02882.19 EME70489.1 - 0.0062 15.9 2.1 0.0065 15.8 0.7 1.9 2 0 0 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NAD_binding_2 PF03446.15 EME70489.1 - 0.007 16.6 2.3 0.04 14.1 0.5 2.2 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase Pyr_redox_2 PF07992.14 EME70489.1 - 0.0073 15.6 0.3 0.0073 15.6 0.3 1.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 EME70489.1 - 0.013 16.1 0.4 0.013 16.1 0.4 1.9 2 0 0 2 2 1 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 EME70489.1 - 0.023 14.6 1.2 0.036 13.9 0.2 1.8 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 EME70489.1 - 0.029 14.8 0.2 0.07 13.6 0.2 1.6 1 0 0 1 1 1 0 Putative NAD(P)-binding TrkA_N PF02254.18 EME70489.1 - 0.3 11.3 2.1 0.35 11.1 0.4 2.0 2 0 0 2 2 2 0 TrkA-N domain Pyrophosphatase PF00719.19 EME70490.1 - 5.9e-52 175.7 0.0 6.8e-52 175.5 0.0 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase CreA PF05981.12 EME70493.1 - 5.1e-58 194.7 0.0 6.1e-58 194.5 0.0 1.0 1 0 0 1 1 1 1 CreA protein Ala_racemase_N PF01168.20 EME70494.1 - 3.4e-12 46.5 0.1 4e-12 46.2 0.1 1.0 1 0 0 1 1 1 1 Alanine racemase, N-terminal domain TMP-TENI PF02581.17 EME70495.1 - 2.3e-19 69.4 0.0 3e-19 69.0 0.0 1.2 1 0 0 1 1 1 1 Thiamine monophosphate synthase TPR_2 PF07719.17 EME70496.1 - 7.6e-20 69.4 18.0 1.7e-05 24.6 0.1 8.0 7 1 0 7 7 7 4 Tetratricopeptide repeat TPR_19 PF14559.6 EME70496.1 - 1.9e-19 69.9 18.4 1.4e-06 28.7 0.6 4.7 1 1 3 4 4 4 4 Tetratricopeptide repeat TPR_16 PF13432.6 EME70496.1 - 2.3e-17 63.3 43.4 1.1e-06 29.2 3.0 6.0 3 2 3 6 6 6 5 Tetratricopeptide repeat TPR_14 PF13428.6 EME70496.1 - 5e-16 58.0 36.6 0.003 18.2 0.6 7.2 3 1 4 7 7 7 5 Tetratricopeptide repeat TPR_1 PF00515.28 EME70496.1 - 8.1e-16 57.1 4.9 6.2e-05 22.6 0.0 6.9 7 0 0 7 7 7 2 Tetratricopeptide repeat TPR_8 PF13181.6 EME70496.1 - 1.8e-13 49.5 0.1 0.00078 19.5 0.0 6.1 6 1 0 6 6 6 2 Tetratricopeptide repeat TPR_17 PF13431.6 EME70496.1 - 2.6e-13 49.4 5.7 0.037 14.4 0.0 6.4 7 0 0 7 7 6 3 Tetratricopeptide repeat TPR_9 PF13371.6 EME70496.1 - 1.3e-10 41.2 30.8 1e-05 25.5 3.9 4.4 1 1 2 3 3 3 2 Tetratricopeptide repeat TPR_11 PF13414.6 EME70496.1 - 1.2e-09 37.6 4.5 0.0012 18.4 0.1 3.5 3 0 0 3 3 3 2 TPR repeat TPR_12 PF13424.6 EME70496.1 - 6.1e-08 32.9 25.0 0.0018 18.5 4.1 5.1 2 2 3 5 5 5 5 Tetratricopeptide repeat TPR_15 PF13429.6 EME70496.1 - 1.7e-06 27.5 10.5 1.8e-05 24.1 6.0 2.4 1 1 1 2 2 2 1 Tetratricopeptide repeat TPR_4 PF07721.14 EME70496.1 - 1.9e-06 27.9 51.7 0.17 12.6 1.6 8.8 7 1 0 7 7 7 4 Tetratricopeptide repeat ANAPC3 PF12895.7 EME70496.1 - 3.3e-06 27.2 0.7 0.046 14.0 0.0 3.6 1 1 3 4 4 4 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_7 PF13176.6 EME70496.1 - 9.3e-06 25.3 10.5 2.8 8.2 0.0 6.4 6 0 0 6 6 6 1 Tetratricopeptide repeat TPR_20 PF14561.6 EME70496.1 - 0.00034 20.9 14.9 0.0069 16.7 0.6 4.6 2 1 2 4 4 4 2 Tetratricopeptide repeat TPR_10 PF13374.6 EME70496.1 - 0.0018 18.1 25.6 0.29 11.1 0.0 6.9 6 1 0 6 6 6 2 Tetratricopeptide repeat Glyco_transf_9 PF01075.17 EME70496.1 - 0.003 16.9 0.2 0.0054 16.1 0.2 1.3 1 0 0 1 1 1 1 Glycosyltransferase family 9 (heptosyltransferase) TPR_6 PF13174.6 EME70496.1 - 0.0068 17.0 11.6 3.4 8.5 0.0 6.2 7 0 0 7 7 7 1 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 EME70496.1 - 0.013 15.5 0.1 6.4 6.9 0.0 2.8 2 0 0 2 2 2 0 Fis1 C-terminal tetratricopeptide repeat Wzy_C_2 PF11846.8 EME70496.1 - 0.022 14.7 2.3 3.5 7.5 0.1 3.1 1 1 2 3 3 3 0 Virulence factor membrane-bound polymerase, C-terminal BTAD PF03704.17 EME70496.1 - 0.77 10.2 21.4 0.3 11.5 2.3 4.1 2 1 2 4 4 4 0 Bacterial transcriptional activator domain Porin_4 PF13609.6 EME70497.1 - 1.2e-47 163.3 38.8 1.4e-47 162.9 38.8 1.1 1 0 0 1 1 1 1 Gram-negative porin DUF3576 PF12100.8 EME70498.1 - 3.6e-43 145.8 0.0 4.6e-43 145.5 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF3576) tRNA-synt_1_2 PF13603.6 EME70499.1 - 6.7e-66 221.3 0.0 9.6e-66 220.8 0.0 1.2 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1 PF00133.22 EME70499.1 - 6.5e-65 219.5 0.6 2.6e-25 88.8 0.7 6.0 2 1 3 5 5 5 5 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.11 EME70499.1 - 1.9e-29 102.6 0.0 8.3e-20 70.9 0.0 4.0 3 1 1 4 4 4 3 tRNA synthetases class I (M) Anticodon_1 PF08264.13 EME70499.1 - 4e-18 65.8 0.0 4.4e-17 62.5 0.0 2.3 2 0 0 2 2 2 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.19 EME70499.1 - 6.9e-05 22.3 0.0 0.17 11.2 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 EME70499.1 - 0.00024 20.1 0.0 0.23 10.3 0.0 3.0 3 0 0 3 3 3 2 tRNA synthetases class I (K) LptE PF04390.12 EME70500.1 - 5.9e-10 39.8 1.0 7.9e-10 39.4 1.0 1.1 1 0 0 1 1 1 1 Lipopolysaccharide-assembly ComFB PF10719.9 EME70500.1 - 0.0085 16.2 0.1 0.015 15.4 0.1 1.4 1 0 0 1 1 1 1 Late competence development protein ComFB DNA_pol3_delta PF06144.13 EME70501.1 - 1.5e-06 28.2 0.0 2.2e-06 27.6 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase III, delta subunit Lipase_GDSL_2 PF13472.6 EME70502.1 - 2.5e-18 67.1 1.0 7.3e-17 62.3 1.0 2.1 1 1 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family Bac_GDH PF05088.12 EME70503.1 - 0 2101.6 0.0 0 2101.4 0.0 1.0 1 0 0 1 1 1 1 Bacterial NAD-glutamate dehydrogenase SIS_2 PF13580.6 EME70504.1 - 6.5e-25 87.8 1.4 8.1e-25 87.4 1.4 1.1 1 0 0 1 1 1 1 SIS domain SIS PF01380.22 EME70504.1 - 0.00041 20.2 0.1 0.014 15.2 0.0 2.2 1 1 0 2 2 2 1 SIS domain FIST PF08495.10 EME70504.1 - 0.083 12.9 0.7 1.1 9.2 0.1 2.0 1 1 1 2 2 2 0 FIST N domain DUF1772 PF08592.11 EME70505.1 - 3.4 8.0 8.0 38 4.6 8.0 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF1772) Wzy_C PF04932.15 EME70506.1 - 0.069 12.8 1.5 0.068 12.8 1.5 1.1 1 0 0 1 1 1 0 O-Antigen ligase Carbam_trans_N PF02543.15 EME70507.1 - 3e-107 359.2 0.0 3.8e-107 358.9 0.0 1.1 1 0 0 1 1 1 1 Carbamoyltransferase N-terminus Carbam_trans_C PF16861.5 EME70507.1 - 3.6e-75 251.2 0.0 1.2e-74 249.6 0.0 1.8 2 0 0 2 2 2 1 Carbamoyltransferase C-terminus Peptidase_M22 PF00814.25 EME70507.1 - 5.5e-05 23.0 0.0 0.014 15.1 0.0 2.3 2 0 0 2 2 2 2 Glycoprotease family Sua5_yciO_yrdC PF01300.18 EME70507.1 - 0.039 13.5 0.0 0.074 12.5 0.0 1.4 1 0 0 1 1 1 0 Telomere recombination Radical_SAM PF04055.21 EME70508.1 - 1.7e-09 38.3 0.0 2.4e-08 34.6 0.0 2.1 1 1 0 2 2 2 1 Radical SAM superfamily SPASM PF13186.6 EME70508.1 - 7.2e-05 23.2 0.0 0.00016 22.1 0.0 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain DUF43 PF01861.16 EME70508.1 - 0.12 11.6 0.0 0.21 10.8 0.0 1.3 1 0 0 1 1 1 0 Branched-chain polyamine synthase A C-terminal domain APS_kinase PF01583.20 EME70510.1 - 1.1e-69 233.3 0.0 2e-69 232.5 0.0 1.4 1 0 0 1 1 1 1 Adenylylsulphate kinase GTP_EFTU PF00009.27 EME70510.1 - 1.1e-38 132.8 0.0 3.1e-38 131.3 0.0 1.7 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain MMR_HSR1 PF01926.23 EME70510.1 - 2.3e-06 27.7 0.1 0.00025 21.1 0.0 3.1 2 1 0 2 2 2 1 50S ribosome-binding GTPase AAA_29 PF13555.6 EME70510.1 - 1.5e-05 24.6 0.0 0.0015 18.2 0.0 2.7 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_33 PF13671.6 EME70510.1 - 3.6e-05 23.9 0.1 0.00043 20.5 0.0 2.6 2 1 0 2 2 2 1 AAA domain AAA_18 PF13238.6 EME70510.1 - 0.00077 20.0 0.0 0.0017 18.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain GTP_EFTU_D2 PF03144.25 EME70510.1 - 0.0013 19.0 0.2 0.0031 17.9 0.2 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 2 RsgA_GTPase PF03193.16 EME70510.1 - 0.0092 15.9 0.3 3.8 7.4 0.0 3.3 2 1 1 3 3 3 1 RsgA GTPase AAA_16 PF13191.6 EME70510.1 - 0.015 15.7 0.0 0.052 13.9 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain KTI12 PF08433.10 EME70510.1 - 0.033 13.6 0.0 0.056 12.9 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 ABC_tran PF00005.27 EME70510.1 - 0.069 13.7 0.0 0.26 11.8 0.0 1.9 2 0 0 2 2 2 0 ABC transporter Zeta_toxin PF06414.12 EME70510.1 - 0.071 12.4 0.0 0.16 11.2 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin Thymidylate_kin PF02223.17 EME70510.1 - 0.072 12.8 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 Thymidylate kinase SRP54 PF00448.22 EME70510.1 - 0.11 12.1 0.0 5.4 6.6 0.0 2.3 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_22 PF13401.6 EME70510.1 - 0.12 12.6 0.1 0.32 11.3 0.0 1.7 2 0 0 2 2 1 0 AAA domain AAA_17 PF13207.6 EME70510.1 - 0.19 12.2 0.0 0.45 10.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain PAPS_reduct PF01507.19 EME70511.1 - 1.1e-64 217.6 0.0 1.4e-64 217.3 0.0 1.1 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family Wzy_C PF04932.15 EME70512.1 - 6.4e-11 42.1 1.8 6.4e-11 42.1 1.8 3.4 2 2 0 2 2 2 1 O-Antigen ligase Glycos_transf_2 PF00535.26 EME70513.1 - 8.5e-10 38.7 0.2 2e-05 24.5 0.0 2.0 1 1 1 2 2 2 2 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 EME70513.1 - 0.061 13.2 0.0 0.12 12.2 0.0 1.6 1 1 0 1 1 1 0 Glycosyltransferase like family 2 Hepar_II_III PF07940.13 EME70514.1 - 9.7e-18 64.7 0.3 1.5e-17 64.0 0.3 1.3 1 0 0 1 1 1 1 Heparinase II/III-like protein Hepar_II_III_N PF16889.5 EME70514.1 - 0.031 13.6 0.0 0.046 13.0 0.0 1.2 1 0 0 1 1 1 0 Heparinase II/III N-terminus Glyco_transf_4 PF13439.6 EME70515.1 - 0.0058 16.6 9.7 0.006 16.6 5.5 2.7 1 1 2 3 3 3 1 Glycosyltransferase Family 4 Glycos_transf_N PF04413.16 EME70515.1 - 0.11 12.1 0.0 0.21 11.2 0.0 1.3 1 0 0 1 1 1 0 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) Methyltransf_23 PF13489.6 EME70516.1 - 1.1e-12 48.0 0.0 1.5e-12 47.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 EME70516.1 - 2.9e-11 44.0 0.0 4.5e-11 43.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 EME70516.1 - 4.9e-10 40.0 0.0 8.4e-10 39.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 EME70516.1 - 2.3e-09 37.8 0.0 3.9e-09 37.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 EME70516.1 - 3.4e-08 32.9 0.0 4.9e-08 32.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_PK PF05891.12 EME70516.1 - 2.3e-06 27.3 0.0 3e-06 26.9 0.0 1.1 1 0 0 1 1 1 1 AdoMet dependent proline di-methyltransferase NodS PF05401.11 EME70516.1 - 0.0053 16.4 0.0 0.0071 16.0 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) DREV PF05219.12 EME70516.1 - 0.0079 15.3 0.0 0.011 14.9 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase Methyltransf_31 PF13847.6 EME70516.1 - 0.0085 15.9 0.0 0.023 14.5 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.14 EME70516.1 - 0.0087 15.6 0.0 0.02 14.4 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_9 PF08003.11 EME70516.1 - 0.012 14.5 0.0 0.02 13.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) Ubie_methyltran PF01209.18 EME70516.1 - 0.028 13.8 0.0 0.05 12.9 0.0 1.4 1 1 0 1 1 1 0 ubiE/COQ5 methyltransferase family Methyltransf_28 PF02636.17 EME70516.1 - 0.16 11.5 0.0 0.25 11.0 0.0 1.3 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase PMT_2 PF13231.6 EME70517.1 - 2.3e-08 34.4 28.6 1.5e-07 31.8 18.3 3.5 3 0 0 3 3 3 2 Dolichyl-phosphate-mannose-protein mannosyltransferase Glycos_transf_2 PF00535.26 EME70518.1 - 2e-26 92.8 0.0 3.3e-26 92.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 EME70518.1 - 9.5e-21 74.7 0.4 1.3e-20 74.3 0.4 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 EME70518.1 - 6.8e-12 45.4 0.0 1.5e-10 41.0 0.0 2.0 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 EME70518.1 - 1.9e-08 34.5 6.3 3.2e-08 33.7 6.3 1.4 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_4 PF13704.6 EME70518.1 - 0.0016 18.9 0.0 0.0039 17.7 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferase family 2 2OG-FeII_Oxy PF03171.20 EME70518.1 - 0.11 13.0 0.0 0.79 10.2 0.0 2.1 2 0 0 2 2 2 0 2OG-Fe(II) oxygenase superfamily Asn_synthase PF00733.21 EME70519.1 - 4.1e-80 270.1 0.0 5.5e-80 269.7 0.0 1.1 1 0 0 1 1 1 1 Asparagine synthase GATase_7 PF13537.6 EME70519.1 - 2.6e-36 124.2 0.0 3.9e-36 123.7 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 EME70519.1 - 4.1e-27 95.0 0.0 8.7e-27 93.9 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain DUF3700 PF12481.8 EME70519.1 - 0.031 13.7 0.0 0.053 13.0 0.0 1.3 1 0 0 1 1 1 0 Aluminium induced protein DUF5632 PF18646.1 EME70519.1 - 0.053 13.6 0.1 0.92 9.6 0.0 2.6 2 0 0 2 2 2 0 Family of unknown function (DUF5632) PMT_2 PF13231.6 EME70520.1 - 1.4e-06 28.6 11.8 1.4e-06 28.6 11.8 2.5 2 0 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Glyco_transf_22 PF03901.17 EME70520.1 - 0.54 9.4 8.6 2 7.5 8.6 1.8 1 1 0 1 1 1 0 Alg9-like mannosyltransferase family PMT PF02366.18 EME70520.1 - 1.4 8.4 15.6 0.085 12.4 9.3 2.1 2 0 0 2 2 2 0 Dolichyl-phosphate-mannose-protein mannosyltransferase Methyltransf_25 PF13649.6 EME70521.1 - 2.3e-14 53.9 0.0 3.8e-14 53.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 EME70521.1 - 2.8e-13 50.4 0.0 5.1e-13 49.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 EME70521.1 - 3.4e-12 46.4 0.0 4.5e-12 46.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 EME70521.1 - 1.2e-11 45.1 0.0 2.2e-11 44.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 EME70521.1 - 1.1e-10 41.6 0.0 1.4e-10 41.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain NodS PF05401.11 EME70521.1 - 2.7e-06 27.1 0.0 4.9e-06 26.3 0.0 1.4 1 1 0 1 1 1 1 Nodulation protein S (NodS) FtsJ PF01728.19 EME70521.1 - 5.7e-06 26.5 0.0 7.1e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase MetW PF07021.12 EME70521.1 - 3.1e-05 23.6 0.0 4.6e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Ubie_methyltran PF01209.18 EME70521.1 - 0.00043 19.7 0.0 0.0019 17.5 0.0 1.8 1 1 1 2 2 2 1 ubiE/COQ5 methyltransferase family MTS PF05175.14 EME70521.1 - 0.00098 18.7 0.0 0.0013 18.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.19 EME70521.1 - 0.002 17.9 0.0 0.0031 17.3 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_32 PF13679.6 EME70521.1 - 0.0055 16.7 0.0 0.0083 16.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.17 EME70521.1 - 0.0088 15.5 0.0 0.013 15.0 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase CMAS PF02353.20 EME70521.1 - 0.02 14.2 0.0 0.026 13.8 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_18 PF12847.7 EME70521.1 - 0.054 13.4 0.0 0.082 12.8 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_5 PF01795.19 EME70521.1 - 0.067 12.7 0.0 0.09 12.3 0.0 1.1 1 0 0 1 1 1 0 MraW methylase family FmrO PF07091.11 EME70521.1 - 0.094 12.2 0.0 0.14 11.7 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) PrmA PF06325.13 EME70521.1 - 0.12 11.7 0.0 0.23 10.8 0.0 1.4 1 1 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) 2-Hacid_dh_C PF02826.19 EME70523.1 - 5.5e-53 179.0 0.0 7.7e-53 178.5 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 EME70523.1 - 5.7e-15 55.2 0.0 7.5e-15 54.8 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AdoHcyase_NAD PF00670.21 EME70523.1 - 3e-05 24.1 0.0 7.6e-05 22.8 0.0 1.6 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain IlvN PF07991.12 EME70523.1 - 0.00025 20.7 0.0 0.00041 19.9 0.0 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_binding_2 PF03446.15 EME70523.1 - 0.0029 17.8 0.0 0.0047 17.1 0.0 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.18 EME70523.1 - 0.18 11.7 0.1 0.31 10.9 0.1 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Acyl_transf_3 PF01757.22 EME70524.1 - 1.4e-27 96.6 39.5 1.7e-27 96.4 39.5 1.0 1 0 0 1 1 1 1 Acyltransferase family LSR PF05624.14 EME70524.1 - 0.32 11.0 0.2 0.32 11.0 0.2 3.4 4 0 0 4 4 4 0 Lipolysis stimulated receptor (LSR) TMEM220 PF15071.6 EME70524.1 - 1.7 9.5 7.6 1.1 10.0 0.4 2.9 1 1 1 2 2 2 0 Transmembrane family 220, helix DHQ_synthase PF01761.20 EME70525.1 - 1.1e-66 224.7 0.0 1.3e-66 224.4 0.0 1.0 1 0 0 1 1 1 1 3-dehydroquinate synthase Fe-ADH_2 PF13685.6 EME70525.1 - 0.00018 21.3 0.2 0.0004 20.2 0.0 1.6 2 0 0 2 2 2 1 Iron-containing alcohol dehydrogenase adh_short_C2 PF13561.6 EME70526.1 - 5.7e-52 176.6 0.9 7.2e-52 176.3 0.9 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 EME70526.1 - 3.1e-46 157.3 0.3 4.3e-46 156.9 0.3 1.2 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 EME70526.1 - 1.3e-06 28.4 2.1 1.5e-05 25.0 2.1 2.1 1 1 0 1 1 1 1 KR domain Epimerase PF01370.21 EME70526.1 - 2.6e-05 23.8 0.1 7.6e-05 22.3 0.1 1.7 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Glyco_trans_4_4 PF13579.6 EME70526.1 - 0.013 16.0 1.6 2.3 8.6 0.1 2.2 2 0 0 2 2 2 0 Glycosyl transferase 4-like domain NAD_binding_10 PF13460.6 EME70526.1 - 0.024 14.5 0.5 0.03 14.2 0.5 1.2 1 0 0 1 1 1 0 NAD(P)H-binding RmlD_sub_bind PF04321.17 EME70526.1 - 0.1 11.7 0.1 0.16 11.0 0.1 1.2 1 0 0 1 1 1 0 RmlD substrate binding domain Methyltransf_11 PF08241.12 EME70527.1 - 4.3e-22 78.6 0.0 7.7e-22 77.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 EME70527.1 - 6.6e-18 65.2 1.3 6.9e-18 65.2 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 EME70527.1 - 3.4e-14 53.0 0.0 5.8e-14 52.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 EME70527.1 - 3.5e-14 53.3 0.0 6e-14 52.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 EME70527.1 - 1e-11 44.9 0.0 1.8e-11 44.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 EME70527.1 - 3.9e-08 32.9 0.0 5.9e-08 32.3 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_9 PF08003.11 EME70527.1 - 9.2e-05 21.5 0.0 0.00014 20.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) RPA_interact_C PF14768.6 EME70527.1 - 0.00083 19.9 0.0 0.0013 19.2 0.0 1.3 1 0 0 1 1 1 1 Replication protein A interacting C-terminal Methyltransf_29 PF03141.16 EME70527.1 - 0.048 12.2 0.0 0.063 11.8 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase NodS PF05401.11 EME70527.1 - 0.14 11.7 0.0 0.25 10.9 0.0 1.3 1 0 0 1 1 1 0 Nodulation protein S (NodS) CTP_transf_3 PF02348.19 EME70528.1 - 3.1e-35 122.1 0.0 3.8e-35 121.8 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase NTP_transf_3 PF12804.7 EME70528.1 - 4e-12 46.8 0.0 5.1e-12 46.4 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain PHP_C PF13263.6 EME70528.1 - 0.0091 15.7 0.0 0.017 14.8 0.0 1.4 1 0 0 1 1 1 1 PHP-associated Hydrolase_6 PF13344.6 EME70528.1 - 0.028 14.5 0.0 0.15 12.2 0.0 1.9 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase PK_C PF02887.16 EME70528.1 - 0.037 14.2 0.0 0.058 13.6 0.0 1.2 1 0 0 1 1 1 0 Pyruvate kinase, alpha/beta domain GFO_IDH_MocA PF01408.22 EME70529.1 - 2.5e-16 60.6 0.0 4.1e-16 59.9 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 EME70529.1 - 4.4e-07 29.9 0.1 8.7e-07 29.0 0.1 1.5 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain ox_reductase_C PF08635.10 EME70529.1 - 0.003 17.2 0.0 0.0051 16.5 0.0 1.5 1 0 0 1 1 1 1 Putative oxidoreductase C terminal domain DapB_N PF01113.20 EME70529.1 - 0.09 12.9 0.1 0.16 12.1 0.1 1.4 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Gp_dh_N PF00044.24 EME70529.1 - 0.12 12.8 0.3 0.26 11.6 0.3 1.6 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 EME70530.1 - 1.6e-21 77.4 0.1 2.4e-21 76.8 0.1 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 EME70530.1 - 7.6e-14 51.7 0.0 1.3e-13 51.0 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain ox_reductase_C PF08635.10 EME70530.1 - 2.7e-07 30.3 0.0 6.4e-05 22.6 0.0 2.3 1 1 1 2 2 2 2 Putative oxidoreductase C terminal domain F420_oxidored PF03807.17 EME70530.1 - 0.025 15.1 0.0 0.054 14.1 0.0 1.5 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent CoA_binding PF02629.19 EME70530.1 - 0.05 14.3 0.1 0.14 12.8 0.1 1.7 1 0 0 1 1 1 0 CoA binding domain Aminotran_1_2 PF00155.21 EME70531.1 - 2.6e-36 125.6 0.0 2.8e-36 125.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II ABC_tran PF00005.27 EME70532.1 - 3.4e-34 118.3 0.0 1.2e-33 116.6 0.0 1.9 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 EME70532.1 - 3.4e-07 30.4 0.9 0.0055 16.6 0.2 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 EME70532.1 - 3.9e-05 23.2 0.1 0.0097 15.4 0.0 2.4 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 EME70532.1 - 0.00015 21.4 3.0 0.00019 21.1 0.1 2.4 3 0 0 3 3 3 1 P-loop containing region of AAA domain ABC_membrane PF00664.23 EME70532.1 - 0.00051 19.8 10.4 0.00072 19.3 10.4 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region RsgA_GTPase PF03193.16 EME70532.1 - 0.0011 18.9 0.1 0.0076 16.2 0.0 2.3 3 0 0 3 3 3 1 RsgA GTPase AAA_33 PF13671.6 EME70532.1 - 0.017 15.3 0.0 0.04 14.1 0.0 1.7 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 EME70532.1 - 0.04 13.3 0.4 0.23 10.8 0.0 2.3 3 0 0 3 3 3 0 Magnesium chelatase, subunit ChlI APS_kinase PF01583.20 EME70532.1 - 0.049 13.5 0.0 0.099 12.5 0.0 1.6 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_16 PF13191.6 EME70532.1 - 0.099 13.0 0.3 0.3 11.5 0.3 1.9 1 1 0 1 1 1 0 AAA ATPase domain AAA_18 PF13238.6 EME70532.1 - 0.11 13.1 0.0 0.25 11.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 EME70532.1 - 0.11 11.7 0.0 0.24 10.7 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_5 PF07728.14 EME70532.1 - 0.13 12.3 0.0 0.55 10.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 EME70532.1 - 0.15 12.3 0.0 0.75 10.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 EME70532.1 - 0.16 11.5 0.1 0.92 9.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 EME70532.1 - 0.2 12.2 0.0 0.32 11.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain Methyltransf_21 PF05050.12 EME70533.1 - 8.8e-09 35.6 0.0 1.5e-08 34.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase FkbM domain Met_10 PF02475.16 EME70533.1 - 0.016 14.9 0.0 0.025 14.3 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein Radical_SAM PF04055.21 EME70534.1 - 4e-15 56.6 0.1 6e-15 56.0 0.1 1.3 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.6 EME70534.1 - 6.7e-06 26.5 0.5 1.4e-05 25.5 0.5 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 EME70534.1 - 0.00051 20.3 0.0 0.0013 19.0 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 EME70534.1 - 0.0018 18.4 0.0 0.0033 17.6 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Tfb2_C PF18307.1 EME70534.1 - 0.019 15.4 0.2 3.4 8.2 0.0 2.5 2 0 0 2 2 2 0 Transcription factor Tfb2 (p52) C-terminal domain GLF PF03275.13 EME70535.1 - 2.1e-33 115.8 3.6 2.9e-33 115.3 3.6 1.2 1 0 0 1 1 1 1 UDP-galactopyranose mutase NAD_binding_8 PF13450.6 EME70535.1 - 1.9e-13 50.4 0.1 4.2e-13 49.3 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Amino_oxidase PF01593.24 EME70535.1 - 5.8e-08 32.4 0.0 9e-07 28.5 0.0 2.0 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase Pyr_redox_2 PF07992.14 EME70535.1 - 3.5e-06 26.5 0.0 6.7e-06 25.5 0.0 1.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 EME70535.1 - 6e-06 25.6 0.5 8.5e-06 25.1 0.5 1.2 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.24 EME70535.1 - 2.1e-05 24.3 0.0 3.4e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox PF00070.27 EME70535.1 - 2.2e-05 24.9 0.9 0.00013 22.5 0.2 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 EME70535.1 - 7.3e-05 22.3 0.0 0.00011 21.7 0.0 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 EME70535.1 - 0.00058 19.2 0.2 0.00096 18.5 0.2 1.3 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.14 EME70535.1 - 0.0018 17.1 0.3 0.0025 16.6 0.3 1.2 1 0 0 1 1 1 1 HI0933-like protein GIDA PF01134.22 EME70535.1 - 0.0028 16.8 0.2 0.0042 16.2 0.2 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A ApbA PF02558.16 EME70535.1 - 0.046 13.4 0.7 0.076 12.6 0.7 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Pyr_redox_3 PF13738.6 EME70535.1 - 0.056 12.7 0.1 0.41 9.9 0.0 2.2 2 1 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 EME70535.1 - 0.064 12.1 0.2 0.093 11.6 0.2 1.2 1 0 0 1 1 1 0 Tryptophan halogenase Lycopene_cycl PF05834.12 EME70535.1 - 0.069 12.2 0.1 0.1 11.6 0.1 1.2 1 0 0 1 1 1 0 Lycopene cyclase protein IQ_SEC7_PH PF16453.5 EME70535.1 - 0.17 11.9 0.0 0.31 11.0 0.0 1.3 1 0 0 1 1 1 0 PH domain Thi4 PF01946.17 EME70535.1 - 0.21 10.8 0.3 0.31 10.2 0.3 1.2 1 0 0 1 1 1 0 Thi4 family AlaDh_PNT_C PF01262.21 EME70535.1 - 0.24 10.7 0.2 0.48 9.7 0.2 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Epimerase PF01370.21 EME70536.1 - 8e-25 87.7 0.0 9.7e-25 87.4 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 EME70536.1 - 5.6e-17 61.8 0.0 7.4e-17 61.4 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain GDP_Man_Dehyd PF16363.5 EME70536.1 - 2.7e-12 46.7 0.2 1.1e-11 44.8 0.2 1.8 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase NAD_binding_4 PF07993.12 EME70536.1 - 1.4e-10 40.8 0.2 9.5e-09 34.8 0.0 2.6 1 1 1 2 2 2 1 Male sterility protein Polysacc_synt_2 PF02719.15 EME70536.1 - 1.4e-06 27.7 0.1 0.0019 17.4 0.0 3.4 3 1 0 3 3 3 2 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.19 EME70536.1 - 1.7e-06 27.3 0.0 2.5e-06 26.7 0.0 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NmrA PF05368.13 EME70536.1 - 0.0011 18.6 0.0 0.0019 17.8 0.0 1.4 1 0 0 1 1 1 1 NmrA-like family adh_short PF00106.25 EME70536.1 - 0.025 14.0 0.0 0.21 11.0 0.0 2.1 2 0 0 2 2 2 0 short chain dehydrogenase 3HCDH_N PF02737.18 EME70536.1 - 0.15 11.9 0.0 0.23 11.3 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DUF1971 PF09313.11 EME70537.1 - 0.0021 18.0 0.0 0.0049 16.9 0.0 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF1971) Cupin_2 PF07883.11 EME70537.1 - 0.011 15.4 0.2 0.02 14.6 0.2 1.4 1 1 0 1 1 1 0 Cupin domain Cupin_7 PF12973.7 EME70537.1 - 0.013 15.4 0.0 0.023 14.6 0.0 1.4 1 0 0 1 1 1 0 ChrR Cupin-like domain Radical_SAM PF04055.21 EME70538.1 - 5.8e-22 78.8 0.1 8.7e-21 75.0 0.0 2.2 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.19 EME70538.1 - 5.7e-15 55.4 0.2 2.5e-14 53.4 0.1 2.1 2 2 0 2 2 2 1 B12 binding domain RmlD_sub_bind PF04321.17 EME70539.1 - 8.2e-34 117.0 0.0 9.7e-34 116.8 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.21 EME70539.1 - 1.7e-08 34.3 0.0 2.1e-08 33.9 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 EME70539.1 - 0.0018 18.2 2.7 0.0048 16.8 2.7 1.8 1 1 0 1 1 1 1 NAD(P)H-binding KR PF08659.10 EME70539.1 - 0.074 13.0 0.2 0.12 12.3 0.2 1.5 1 0 0 1 1 1 0 KR domain Methyltransf_25 PF13649.6 EME70540.1 - 5.9e-14 52.5 0.0 1.1e-13 51.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 EME70540.1 - 1.8e-13 50.9 0.0 3.1e-13 50.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 EME70540.1 - 1.9e-13 50.5 0.0 2.9e-13 49.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 EME70540.1 - 2.3e-08 34.7 0.0 6.6e-08 33.2 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 EME70540.1 - 4.1e-08 33.2 0.0 6.1e-08 32.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 EME70540.1 - 9.7e-06 25.3 0.0 1.4e-05 24.8 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW MTS PF05175.14 EME70540.1 - 0.00042 19.9 0.0 0.00061 19.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.20 EME70540.1 - 0.0014 17.9 0.0 0.002 17.5 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_4 PF02390.17 EME70540.1 - 0.0026 17.3 0.0 0.0046 16.4 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_32 PF13679.6 EME70540.1 - 0.0027 17.7 0.0 0.0046 17.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 EME70540.1 - 0.0044 16.4 0.0 0.0065 15.8 0.0 1.4 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_18 PF12847.7 EME70540.1 - 0.0077 16.2 0.1 0.02 14.8 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain TPMT PF05724.11 EME70540.1 - 0.097 12.3 0.0 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) PCMT PF01135.19 EME70540.1 - 0.2 11.3 0.0 0.31 10.7 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) SPASM PF13186.6 EME70543.1 - 3.3e-08 33.9 0.5 7.8e-08 32.7 0.2 1.8 2 0 0 2 2 2 1 Iron-sulfur cluster-binding domain Radical_SAM PF04055.21 EME70543.1 - 1.4e-07 32.0 0.1 3.1e-07 30.9 0.1 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Methyltransf_11 PF08241.12 EME70544.1 - 7e-10 39.4 0.0 1e-09 38.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 EME70544.1 - 8.5e-10 39.2 0.0 1.2e-09 38.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 EME70544.1 - 3.5e-08 33.4 0.0 5.9e-08 32.6 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 EME70544.1 - 1.8e-07 31.2 0.0 2.5e-07 30.7 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 EME70544.1 - 1.5e-05 25.7 0.0 2.8e-05 24.8 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 EME70544.1 - 0.0012 18.2 0.0 0.0016 17.8 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.14 EME70544.1 - 0.0036 16.9 0.0 0.0049 16.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain MetW PF07021.12 EME70544.1 - 0.0039 16.8 0.0 0.0055 16.3 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_32 PF13679.6 EME70544.1 - 0.0059 16.6 0.0 0.0084 16.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 EME70544.1 - 0.042 13.8 0.0 0.058 13.3 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain CMAS PF02353.20 EME70544.1 - 0.055 12.8 0.0 0.065 12.5 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase TPMT PF05724.11 EME70544.1 - 0.17 11.5 0.0 0.2 11.3 0.0 1.2 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) Radical_SAM PF04055.21 EME70546.1 - 1e-20 74.8 0.2 5.7e-19 69.1 0.0 2.1 1 1 1 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 EME70546.1 - 2.5e-07 31.1 0.1 1.5e-06 28.6 0.0 2.2 3 0 0 3 3 3 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 EME70546.1 - 4.3e-06 26.9 0.6 1e-05 25.6 0.0 1.9 2 0 0 2 2 2 1 4Fe-4S single cluster domain SPASM PF13186.6 EME70546.1 - 5.4e-05 23.6 0.2 0.0002 21.8 0.1 2.1 2 0 0 2 2 2 1 Iron-sulfur cluster-binding domain GTPase_binding PF09027.10 EME70546.1 - 0.034 14.1 0.1 0.15 12.1 0.1 1.9 2 0 0 2 2 2 0 GTPase binding Transket_pyr PF02779.24 EME70547.1 - 2.6e-28 98.9 0.0 4.5e-28 98.1 0.0 1.3 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 EME70547.1 - 2e-23 82.6 0.1 5.3e-23 81.2 0.0 1.7 2 0 0 2 2 2 1 Transketolase, C-terminal domain PFOR_II PF17147.4 EME70547.1 - 0.0081 16.5 0.0 0.016 15.5 0.0 1.4 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_N PF00456.21 EME70548.1 - 9.9e-55 185.8 0.0 1.5e-54 185.2 0.0 1.2 1 0 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain E1_dh PF00676.20 EME70548.1 - 1.3e-08 34.1 0.1 1.8e-08 33.7 0.1 1.1 1 0 0 1 1 1 1 Dehydrogenase E1 component DXP_synthase_N PF13292.6 EME70548.1 - 2.8e-08 33.3 0.9 6e-06 25.7 0.9 2.8 1 1 0 2 2 2 2 1-deoxy-D-xylulose-5-phosphate synthase XFP_N PF09364.10 EME70548.1 - 0.00043 19.2 0.1 0.00058 18.8 0.1 1.2 1 0 0 1 1 1 1 XFP N-terminal domain TPP_enzyme_C PF02775.21 EME70548.1 - 0.0032 17.3 2.7 0.041 13.7 2.7 2.3 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APH PF01636.23 EME70549.1 - 5.2e-12 46.2 4.4 5.2e-12 46.2 4.4 2.1 2 1 0 2 2 2 1 Phosphotransferase enzyme family HAD PF12710.7 EME70549.1 - 0.0054 17.1 2.4 0.32 11.4 0.3 3.3 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Epimerase PF01370.21 EME70550.1 - 1.5e-38 132.6 0.0 1.9e-38 132.3 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 EME70550.1 - 1.7e-22 80.3 0.0 4.9e-22 78.8 0.0 1.6 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 EME70550.1 - 8.7e-22 77.4 0.0 1e-21 77.2 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.6 EME70550.1 - 6.7e-18 65.2 0.0 1.3e-17 64.2 0.0 1.5 1 1 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 EME70550.1 - 6.5e-14 52.1 0.0 1.1e-12 48.0 0.0 2.4 2 1 0 2 2 2 1 NmrA-like family RmlD_sub_bind PF04321.17 EME70550.1 - 5.5e-13 48.6 0.0 7.4e-13 48.2 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 EME70550.1 - 1.5e-08 34.1 0.0 0.00053 19.2 0.0 2.3 2 0 0 2 2 2 2 Male sterility protein Polysacc_synt_2 PF02719.15 EME70550.1 - 3e-08 33.2 0.0 9.7e-07 28.2 0.0 2.3 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Sacchrp_dh_NADP PF03435.18 EME70550.1 - 0.0054 17.0 0.0 0.013 15.8 0.0 1.6 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain UDPG_MGDP_dh_N PF03721.14 EME70550.1 - 0.16 11.5 0.4 0.52 9.9 0.4 1.8 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain PfkB PF00294.24 EME70551.1 - 1.1e-14 54.4 0.1 2.4e-14 53.4 0.1 1.6 1 1 0 1 1 1 1 pfkB family carbohydrate kinase CTP_transf_like PF01467.26 EME70551.1 - 3.7e-11 43.4 0.0 6.6e-11 42.6 0.0 1.4 1 0 0 1 1 1 1 Cytidylyltransferase-like DUF4357 PF14267.6 EME70551.1 - 0.0038 17.1 0.0 0.008 16.1 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4357) Npa1 PF11707.8 EME70551.1 - 0.059 12.7 0.0 0.087 12.2 0.0 1.1 1 0 0 1 1 1 0 Ribosome 60S biogenesis N-terminal GDP_Man_Dehyd PF16363.5 EME70552.1 - 2e-60 204.9 0.0 1.3e-58 199.0 0.0 2.0 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 EME70552.1 - 3.9e-60 203.3 0.0 4.6e-60 203.1 0.0 1.0 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 EME70552.1 - 4.6e-28 98.0 0.0 6.1e-28 97.6 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.6 EME70552.1 - 2.1e-15 57.1 0.0 4.1e-15 56.2 0.0 1.4 2 0 0 2 2 2 1 NAD(P)H-binding NAD_binding_4 PF07993.12 EME70552.1 - 9.2e-15 54.5 0.0 1.1e-08 34.5 0.0 2.9 2 1 0 2 2 2 2 Male sterility protein RmlD_sub_bind PF04321.17 EME70552.1 - 3.8e-14 52.5 0.0 5e-14 52.1 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 EME70552.1 - 2.9e-11 43.0 0.0 9e-11 41.4 0.0 1.8 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NmrA PF05368.13 EME70552.1 - 5.8e-10 39.1 0.0 1.2e-09 38.1 0.0 1.4 1 0 0 1 1 1 1 NmrA-like family adh_short PF00106.25 EME70552.1 - 0.0015 18.0 0.0 0.0025 17.3 0.0 1.3 1 0 0 1 1 1 1 short chain dehydrogenase Sacchrp_dh_NADP PF03435.18 EME70552.1 - 0.01 16.1 0.0 0.026 14.8 0.0 1.6 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain KR PF08659.10 EME70552.1 - 0.05 13.5 0.2 0.19 11.6 0.2 2.1 1 1 0 1 1 1 0 KR domain B12-binding PF02310.19 EME70553.1 - 1.1e-13 51.2 0.1 2.5e-13 50.1 0.1 1.6 1 0 0 1 1 1 1 B12 binding domain Radical_SAM PF04055.21 EME70553.1 - 5.3e-12 46.4 0.2 4.5e-11 43.4 0.1 2.3 2 1 0 2 2 2 1 Radical SAM superfamily MAF_flag10 PF01973.18 EME70554.1 - 5.9e-14 52.1 0.0 2.2e-08 34.0 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function DUF115 CTP_transf_3 PF02348.19 EME70555.1 - 1.5e-24 87.2 0.0 1.9e-24 86.9 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase NTP_transf_3 PF12804.7 EME70555.1 - 6.2e-07 29.9 0.6 9.5e-07 29.3 0.6 1.3 1 1 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 EME70555.1 - 0.0044 16.8 0.1 0.0097 15.7 0.0 1.6 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DAPDH_C PF16654.5 EME70556.1 - 0.064 13.1 0.0 0.25 11.2 0.0 1.8 2 0 0 2 2 2 0 Diaminopimelic acid dehydrogenase C-terminal domain Flg_bb_rod PF00460.20 EME70558.1 - 8.2e-06 25.6 0.2 1.8e-05 24.6 0.2 1.5 1 0 0 1 1 1 1 Flagella basal body rod protein Flg_bbr_C PF06429.13 EME70559.1 - 3.6e-12 46.2 0.4 9.9e-12 44.8 0.4 1.8 1 1 0 1 1 1 1 Flagellar basal body rod FlgEFG protein C-terminal Flg_bb_rod PF00460.20 EME70559.1 - 0.00061 19.7 0.3 0.00061 19.7 0.3 1.9 2 0 0 2 2 2 1 Flagella basal body rod protein FliE PF02049.18 EME70560.1 - 1.3e-21 76.5 1.9 1.3e-21 76.5 1.9 1.3 1 1 0 1 1 1 1 Flagellar hook-basal body complex protein FliE Tubulin PF00091.25 EME70560.1 - 0.032 14.4 0.1 0.043 14.0 0.1 1.1 1 0 0 1 1 1 0 Tubulin/FtsZ family, GTPase domain Bac_export_3 PF01313.19 EME70561.1 - 7.6e-29 99.5 8.7 8.6e-29 99.3 8.7 1.0 1 0 0 1 1 1 1 Bacterial export proteins, family 3 Bac_export_1 PF01311.20 EME70561.1 - 0.0036 16.9 6.2 0.0041 16.7 6.2 1.0 1 0 0 1 1 1 1 Bacterial export proteins, family 1 Col_cuticle_N PF01484.17 EME70561.1 - 0.046 13.8 3.3 0.37 10.9 0.3 2.1 2 0 0 2 2 2 0 Nematode cuticle collagen N-terminal domain Bac_export_2 PF01312.19 EME70561.1 - 2.6 7.1 6.3 7.3 5.7 6.3 1.6 1 1 0 1 1 1 0 FlhB HrpN YscU SpaS Family Bac_export_1 PF01311.20 EME70562.1 - 1.1e-58 198.6 31.4 1.2e-58 198.4 31.4 1.0 1 0 0 1 1 1 1 Bacterial export proteins, family 1 Bac_export_2 PF01312.19 EME70563.1 - 1.9e-125 418.5 7.0 2.1e-125 418.3 7.0 1.0 1 0 0 1 1 1 1 FlhB HrpN YscU SpaS Family DUF3263 PF11662.8 EME70563.1 - 0.017 14.9 0.6 0.04 13.8 0.6 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3263) DUF4808 PF16066.5 EME70563.1 - 0.027 15.0 0.2 0.049 14.2 0.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4808) OppC_N PF12911.7 EME70563.1 - 0.082 12.9 7.7 1.7 8.6 0.2 3.2 3 0 0 3 3 3 0 N-terminal TM domain of oligopeptide transport permease C Wzy_C PF04932.15 EME70563.1 - 0.43 10.2 7.2 3.1 7.4 1.4 2.4 1 1 1 2 2 2 0 O-Antigen ligase LIDHydrolase PF10230.9 EME70563.1 - 0.71 9.4 2.6 1.5 8.3 0.2 2.0 2 0 0 2 2 2 0 Lipid-droplet associated hydrolase Tmemb_9 PF05434.11 EME70563.1 - 0.84 9.5 3.1 17 5.3 0.1 2.4 2 0 0 2 2 2 0 TMEM9 DUF2085 PF09858.9 EME70563.1 - 1 9.9 5.3 0.9 10.1 0.3 2.5 3 0 0 3 3 3 0 Predicted membrane protein (DUF2085) DUF3810 PF12725.7 EME70563.1 - 1.3 8.3 4.8 3.5 6.9 4.8 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3810) PAS_4 PF08448.10 EME70564.1 - 1e-30 106.2 5.2 5.7e-14 52.3 0.0 4.5 4 0 0 4 4 4 3 PAS fold PAS PF00989.25 EME70564.1 - 1.3e-23 83.2 0.0 2e-10 40.7 0.0 3.8 3 0 0 3 3 3 3 PAS fold HATPase_c PF02518.26 EME70564.1 - 3.6e-19 69.3 0.0 7.6e-19 68.3 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 EME70564.1 - 2.8e-17 62.9 0.0 5.3e-17 62.0 0.0 1.5 1 0 0 1 1 1 1 Response regulator receiver domain PAS_9 PF13426.7 EME70564.1 - 2e-15 56.9 0.0 4.2e-05 23.7 0.0 3.9 3 0 0 3 3 3 3 PAS domain PAS_8 PF13188.7 EME70564.1 - 3.7e-15 55.5 1.6 5.5e-07 29.5 0.2 3.8 3 0 0 3 3 3 2 PAS domain HisKA PF00512.25 EME70564.1 - 9.1e-09 35.2 0.0 3.3e-08 33.5 0.0 2.1 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_10 PF13596.6 EME70564.1 - 0.0065 17.0 0.0 0.033 14.8 0.0 2.1 2 0 0 2 2 2 1 PAS domain PAS_7 PF12860.7 EME70564.1 - 0.1 12.8 0.1 3.9 7.7 0.0 3.1 3 1 0 3 3 3 0 PAS fold T6SS_TssG PF06996.11 EME70564.1 - 0.42 9.8 3.3 0.33 10.2 0.8 2.0 2 1 0 2 2 2 0 Type VI secretion, TssG Hemerythrin PF01814.23 EME70565.1 - 0.00093 19.8 1.3 0.08 13.6 0.1 2.0 2 0 0 2 2 2 2 Hemerythrin HHE cation binding domain DUF1871 PF08958.10 EME70565.1 - 0.2 12.0 0.0 0.35 11.2 0.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF1871) GATase_2 PF00310.21 EME70566.1 - 1.5e-153 511.5 0.0 2e-153 511.1 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Glu_synthase PF01645.17 EME70566.1 - 1.3e-151 504.9 0.0 2.3e-151 504.1 0.0 1.4 1 0 0 1 1 1 1 Conserved region in glutamate synthase Glu_syn_central PF04898.14 EME70566.1 - 1.5e-98 329.7 0.0 3e-98 328.7 0.0 1.5 2 0 0 2 2 2 1 Glutamate synthase central domain GXGXG PF01493.19 EME70566.1 - 1.4e-76 256.3 3.6 2.9e-76 255.3 3.6 1.5 1 0 0 1 1 1 1 GXGXG motif FMN_dh PF01070.18 EME70566.1 - 0.00013 21.1 2.2 0.00043 19.4 1.8 1.9 2 0 0 2 2 2 1 FMN-dependent dehydrogenase Ser_hydrolase PF06821.13 EME70566.1 - 0.62 9.9 2.6 1.2 9.0 2.6 1.4 1 0 0 1 1 1 0 Serine hydrolase Fer4_20 PF14691.6 EME70567.1 - 6.4e-33 112.9 0.2 1.1e-32 112.1 0.2 1.4 1 0 0 1 1 1 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Pyr_redox_2 PF07992.14 EME70567.1 - 9.1e-31 107.2 4.4 1.3e-30 106.7 4.4 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 EME70567.1 - 2.6e-13 50.3 2.2 6.4e-06 26.6 0.1 2.7 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 EME70567.1 - 1.3e-10 41.1 0.2 9.7e-05 21.8 0.0 2.8 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 EME70567.1 - 1.3e-10 41.3 2.1 3.2e-10 40.1 0.4 2.4 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain NAD_binding_7 PF13241.6 EME70567.1 - 7e-06 26.4 2.7 0.042 14.3 0.3 3.0 2 1 0 2 2 2 2 Putative NAD(P)-binding HI0933_like PF03486.14 EME70567.1 - 1e-05 24.5 1.2 6.4e-05 21.8 0.3 2.1 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_3 PF01494.19 EME70567.1 - 2.4e-05 23.8 0.3 5.3e-05 22.6 0.3 1.5 1 0 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.7 EME70567.1 - 3.1e-05 23.5 1.0 3.1e-05 23.5 1.0 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase DAO PF01266.24 EME70567.1 - 3.7e-05 23.5 4.3 0.00098 18.8 0.9 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase Amino_oxidase PF01593.24 EME70567.1 - 0.00018 20.9 1.6 0.00045 19.6 0.3 2.2 3 0 0 3 3 3 1 Flavin containing amine oxidoreductase AlaDh_PNT_C PF01262.21 EME70567.1 - 0.00075 18.9 5.8 0.016 14.6 0.2 2.5 2 1 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain Thi4 PF01946.17 EME70567.1 - 0.00078 18.7 1.6 0.0019 17.5 0.3 2.2 3 0 0 3 3 3 1 Thi4 family FAD_binding_2 PF00890.24 EME70567.1 - 0.0015 17.7 3.7 0.0025 17.0 0.8 2.6 3 0 0 3 3 3 1 FAD binding domain 2-Hacid_dh_C PF02826.19 EME70567.1 - 0.013 14.9 0.6 0.056 12.8 0.1 2.1 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain K_oxygenase PF13434.6 EME70567.1 - 0.019 14.2 0.1 0.11 11.6 0.0 2.0 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_9 PF13454.6 EME70567.1 - 0.019 15.0 1.4 0.036 14.1 0.5 1.9 2 0 0 2 2 1 0 FAD-NAD(P)-binding Shikimate_DH PF01488.20 EME70567.1 - 0.022 14.8 0.2 5.2 7.1 0.0 2.5 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase GIDA PF01134.22 EME70567.1 - 0.031 13.4 0.5 0.031 13.4 0.5 2.5 3 0 0 3 3 3 0 Glucose inhibited division protein A Rossmann-like PF10727.9 EME70567.1 - 0.032 14.1 1.7 0.082 12.8 0.3 2.3 3 0 0 3 3 3 0 Rossmann-like domain NAD_binding_2 PF03446.15 EME70567.1 - 0.036 14.2 0.5 0.34 11.1 0.0 2.6 3 0 0 3 3 3 0 NAD binding domain of 6-phosphogluconate dehydrogenase Trp_halogenase PF04820.14 EME70567.1 - 0.051 12.4 0.1 0.1 11.5 0.1 1.4 1 0 0 1 1 1 0 Tryptophan halogenase zf-HIT PF04438.16 EME70567.1 - 0.057 13.3 2.2 0.13 12.2 2.2 1.5 1 0 0 1 1 1 0 HIT zinc finger F420_oxidored PF03807.17 EME70567.1 - 0.093 13.3 0.4 6.3 7.4 0.1 3.0 3 0 0 3 3 2 0 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.18 EME70567.1 - 0.42 10.5 2.0 0.35 10.7 0.3 1.7 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.21 EME70567.1 - 0.89 9.6 3.9 5.9 6.9 0.5 2.3 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain BacA PF02673.18 EME70568.1 - 9.3e-52 176.3 18.7 1.1e-51 176.1 18.7 1.0 1 0 0 1 1 1 1 Bacitracin resistance protein BacA Ldr_toxin PF13940.6 EME70568.1 - 0.23 11.6 6.3 1.7 8.7 0.3 4.1 4 0 0 4 4 4 0 Toxin Ldr, type I toxin-antitoxin system Transgly PF00912.22 EME70569.1 - 1.7e-60 203.5 0.0 2.4e-60 203.0 0.0 1.2 1 0 0 1 1 1 1 Transglycosylase Transpeptidase PF00905.22 EME70569.1 - 4.5e-34 118.0 0.1 1.4e-33 116.5 0.1 1.8 1 1 0 1 1 1 1 Penicillin binding protein transpeptidase domain RHH_5 PF07878.11 EME70570.1 - 1.3e-06 28.1 0.2 1.9e-06 27.7 0.2 1.2 1 0 0 1 1 1 1 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 RHH_1 PF01402.21 EME70570.1 - 1.5e-06 27.9 0.0 3.5e-06 26.7 0.0 1.6 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family ParD PF09386.10 EME70570.1 - 1.9e-05 25.0 0.1 6.3e-05 23.3 0.1 1.7 1 1 0 1 1 1 1 Antitoxin ParD DUF5063 PF16702.5 EME70570.1 - 0.036 14.4 0.0 0.044 14.2 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF5063) RHH_3 PF12651.7 EME70570.1 - 0.043 13.8 0.0 0.058 13.4 0.0 1.4 1 0 0 1 1 1 0 Ribbon-helix-helix domain NMO PF03060.15 EME70571.1 - 4.3e-07 29.6 0.0 2.2e-06 27.3 0.0 2.1 2 1 0 2 2 2 1 Nitronate monooxygenase GDPD PF03009.17 EME70572.1 - 5.3e-44 150.9 0.0 6.2e-44 150.7 0.0 1.0 1 0 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family GDPD_2 PF13653.6 EME70572.1 - 0.002 18.5 1.5 0.0029 18.0 0.0 2.1 3 0 0 3 3 3 1 Glycerophosphoryl diester phosphodiesterase family BKACE PF05853.12 EME70572.1 - 0.11 11.8 0.0 10 5.3 0.0 2.3 1 1 1 2 2 2 0 beta-keto acid cleavage enzyme Glyco_transf_9 PF01075.17 EME70573.1 - 5.6e-28 97.9 0.0 7.6e-28 97.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase family 9 (heptosyltransferase) Copper-fist PF00649.18 EME70573.1 - 0.085 12.4 0.4 0.2 11.2 0.4 1.6 1 0 0 1 1 1 0 Copper fist DNA binding domain Glycos_transf_1 PF00534.20 EME70573.1 - 0.11 12.0 0.0 0.18 11.3 0.0 1.2 1 0 0 1 1 1 0 Glycosyl transferases group 1 PMT_2 PF13231.6 EME70574.1 - 1.9e-38 132.2 17.6 1.9e-38 132.2 17.6 3.0 4 0 0 4 4 4 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.18 EME70574.1 - 1.5e-06 28.0 14.5 1.5e-06 28.0 14.5 2.2 2 1 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Phasin_2 PF09361.10 EME70576.1 - 6.1e-22 77.8 7.0 9e-22 77.2 7.0 1.3 1 0 0 1 1 1 1 Phasin protein DUF2935 PF11155.8 EME70576.1 - 0.03 14.6 1.6 0.03 14.6 1.6 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF2935) DUF883 PF05957.13 EME70576.1 - 0.24 12.0 4.8 0.21 12.2 0.7 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) P5CR_dimer PF14748.6 EME70577.1 - 1.7e-32 111.7 3.1 3.5e-32 110.7 3.1 1.5 1 0 0 1 1 1 1 Pyrroline-5-carboxylate reductase dimerisation F420_oxidored PF03807.17 EME70577.1 - 1.2e-08 35.4 0.1 4.2e-08 33.7 0.1 2.0 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent CoA_binding_2 PF13380.6 EME70577.1 - 0.0052 17.3 1.2 0.014 15.9 1.1 1.9 1 1 0 1 1 1 1 CoA binding domain YbjN PF10722.9 EME70578.1 - 7.9e-33 113.2 0.2 9.5e-33 113.0 0.2 1.1 1 0 0 1 1 1 1 Putative bacterial sensory transduction regulator BMFP PF04380.13 EME70579.1 - 3.6e-25 88.2 4.4 5.1e-25 87.7 4.4 1.2 1 0 0 1 1 1 1 Membrane fusogenic activity DUF3583 PF12126.8 EME70579.1 - 0.0012 18.4 0.7 0.0014 18.1 0.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3583) HWE_HK PF07536.14 EME70579.1 - 0.05 14.3 0.7 0.2 12.4 0.3 1.9 2 0 0 2 2 2 0 HWE histidine kinase DBI_PRT PF02277.17 EME70580.1 - 5.2e-112 374.3 16.7 5.9e-112 374.1 16.7 1.0 1 0 0 1 1 1 1 Phosphoribosyltransferase CW_binding_2 PF04122.12 EME70580.1 - 0.3 11.8 4.8 3.1 8.5 0.1 3.1 3 0 0 3 3 3 0 Putative cell wall binding repeat 2 CobS PF02654.15 EME70581.1 - 3.2e-48 164.6 27.7 3.7e-48 164.5 27.7 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase His_Phos_1 PF00300.22 EME70582.1 - 2.9e-39 134.8 0.0 3.2e-39 134.6 0.0 1.0 1 0 0 1 1 1 1 Histidine phosphatase superfamily (branch 1) ANTAR PF03861.14 EME70584.1 - 3.4e-18 65.2 5.6 3.4e-18 65.2 5.6 2.0 2 0 0 2 2 2 1 ANTAR domain Response_reg PF00072.24 EME70584.1 - 1.2e-12 48.0 0.2 2.1e-12 47.2 0.2 1.4 1 0 0 1 1 1 1 Response regulator receiver domain OKR_DC_1_N PF03709.15 EME70584.1 - 0.0074 16.6 0.0 0.016 15.5 0.0 1.6 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, N-terminal domain NMT1_2 PF13379.6 EME70585.1 - 9.2e-103 343.3 0.1 1.2e-102 343.0 0.1 1.1 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.11 EME70585.1 - 2.4e-05 24.4 0.0 0.00044 20.3 0.0 2.2 2 0 0 2 2 2 1 NMT1/THI5 like BPD_transp_1 PF00528.22 EME70586.1 - 6.6e-22 78.1 11.7 6.6e-22 78.1 11.7 2.3 2 0 0 2 2 2 2 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 EME70587.1 - 5.8e-58 195.3 0.0 5.1e-29 101.5 0.0 2.2 2 0 0 2 2 2 2 ABC transporter AAA_16 PF13191.6 EME70587.1 - 2.5e-08 34.5 0.9 0.01 16.2 0.3 2.6 2 1 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.6 EME70587.1 - 1.1e-06 28.2 1.7 0.032 14.0 0.2 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_22 PF13401.6 EME70587.1 - 1.9e-06 28.2 0.2 0.057 13.7 0.0 3.0 3 1 0 3 3 2 2 AAA domain AAA_21 PF13304.6 EME70587.1 - 4e-06 26.9 0.8 0.51 10.1 0.0 4.7 4 1 1 5 5 5 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_25 PF13481.6 EME70587.1 - 4.2e-05 23.2 0.3 0.33 10.5 0.0 2.7 2 0 0 2 2 2 2 AAA domain RsgA_GTPase PF03193.16 EME70587.1 - 0.0001 22.3 0.9 0.32 10.9 0.1 2.3 2 0 0 2 2 2 2 RsgA GTPase SMC_N PF02463.19 EME70587.1 - 0.00011 21.7 0.3 8.6 5.7 0.0 4.0 4 0 0 4 4 4 0 RecF/RecN/SMC N terminal domain AAA_33 PF13671.6 EME70587.1 - 0.00012 22.2 1.0 0.31 11.2 0.2 3.2 2 1 0 2 2 2 2 AAA domain AAA PF00004.29 EME70587.1 - 0.0044 17.4 4.8 4.4 7.7 1.5 3.9 2 2 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.22 EME70587.1 - 0.0078 15.4 0.6 2.1 7.4 0.0 2.3 2 0 0 2 2 2 1 NB-ARC domain AAA_23 PF13476.6 EME70587.1 - 0.028 14.9 0.7 4.8 7.6 0.0 2.3 2 0 0 2 2 2 0 AAA domain PhoH PF02562.16 EME70587.1 - 0.029 13.8 0.6 5.1 6.5 0.1 2.3 2 0 0 2 2 2 0 PhoH-like protein cobW PF02492.19 EME70587.1 - 0.035 13.7 0.3 0.78 9.3 0.1 2.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 EME70587.1 - 0.037 13.7 5.1 1.5 8.5 1.1 3.1 3 1 1 4 4 3 0 AAA domain MMR_HSR1 PF01926.23 EME70587.1 - 0.049 13.7 1.2 6.8 6.8 0.0 2.8 3 0 0 3 3 3 0 50S ribosome-binding GTPase MobB PF03205.14 EME70587.1 - 0.061 13.2 0.6 1.6 8.7 0.0 2.4 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B PRK PF00485.18 EME70587.1 - 0.064 13.0 3.4 2.8 7.6 0.7 2.5 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family ABC_ATPase PF09818.9 EME70587.1 - 0.069 11.9 2.5 1.4 7.6 0.1 2.9 3 0 0 3 3 3 0 Predicted ATPase of the ABC class AAA_24 PF13479.6 EME70587.1 - 0.072 12.8 0.2 5.9 6.6 0.1 2.3 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.6 EME70587.1 - 0.11 12.7 4.8 4.1 7.7 0.0 3.4 3 1 0 3 3 2 0 Putative exonuclease SbcCD, C subunit AAA_5 PF07728.14 EME70587.1 - 0.13 12.2 1.1 16 5.4 0.1 3.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) IstB_IS21 PF01695.17 EME70587.1 - 0.19 11.4 3.7 9.8 5.9 0.0 3.1 3 0 0 3 3 3 0 IstB-like ATP binding protein DUF87 PF01935.17 EME70587.1 - 0.2 11.7 1.3 0.46 10.5 0.0 2.1 2 0 0 2 2 2 0 Helicase HerA, central domain NACHT PF05729.12 EME70587.1 - 0.26 11.2 4.5 1.7 8.6 0.1 2.8 3 0 0 3 3 3 0 NACHT domain Mg_chelatase PF01078.21 EME70587.1 - 0.26 10.6 0.9 1.4 8.3 0.1 2.1 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI SRP54 PF00448.22 EME70587.1 - 0.28 10.8 1.4 1.5 8.4 0.1 2.4 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_18 PF13238.6 EME70587.1 - 0.29 11.7 2.7 5.1 7.6 0.1 2.6 2 0 0 2 2 2 0 AAA domain ATPase PF06745.13 EME70587.1 - 0.34 10.2 1.0 17 4.7 0.0 2.6 2 0 0 2 2 2 0 KaiC AAA_28 PF13521.6 EME70587.1 - 2.3 8.5 7.4 2.5 8.3 0.0 3.2 4 0 0 4 4 3 0 AAA domain CbiA PF01656.23 EME70587.1 - 2.9 8.0 4.1 9.4 6.3 0.2 2.6 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain NMT1_2 PF13379.6 EME70588.1 - 8.6e-73 245.1 0.5 1.2e-72 244.7 0.5 1.2 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.11 EME70588.1 - 2.8e-05 24.1 0.1 7.8e-05 22.7 0.0 1.6 2 0 0 2 2 2 1 NMT1/THI5 like Pyr_redox_2 PF07992.14 EME70589.1 - 5.3e-53 180.1 0.2 8.7e-53 179.4 0.2 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer2_BFD PF04324.15 EME70589.1 - 3.3e-28 97.8 6.3 2.5e-14 53.4 2.8 2.8 2 0 0 2 2 2 2 BFD-like [2Fe-2S] binding domain NIR_SIR PF01077.22 EME70589.1 - 2e-27 95.7 0.1 3.6e-27 94.8 0.1 1.4 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain Rubredoxin_C PF18267.1 EME70589.1 - 1.8e-19 69.4 0.0 4.7e-19 68.1 0.0 1.7 1 0 0 1 1 1 1 Rubredoxin NAD+ reductase C-terminal domain Pyr_redox PF00070.27 EME70589.1 - 9.7e-18 64.5 0.2 1.1e-14 54.7 0.1 3.4 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase NIR_SIR_ferr PF03460.17 EME70589.1 - 4.1e-16 58.6 0.0 1.8e-15 56.5 0.0 2.2 2 0 0 2 2 2 1 Nitrite/Sulfite reductase ferredoxin-like half domain DAO PF01266.24 EME70589.1 - 1e-07 31.9 0.4 0.064 12.8 0.1 4.1 4 0 0 4 4 4 2 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 EME70589.1 - 1.6e-06 27.6 0.0 2.8e-06 26.8 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 EME70589.1 - 6.1e-06 25.6 3.0 0.00013 21.2 0.1 2.8 2 1 1 3 3 3 1 Glucose inhibited division protein A NAD_binding_9 PF13454.6 EME70589.1 - 0.00032 20.7 4.5 0.96 9.4 0.0 4.0 4 0 0 4 4 4 2 FAD-NAD(P)-binding Lycopene_cycl PF05834.12 EME70589.1 - 0.0011 18.1 0.6 0.22 10.5 0.0 3.2 3 0 0 3 3 3 1 Lycopene cyclase protein NAD_binding_8 PF13450.6 EME70589.1 - 0.0013 18.9 0.0 0.34 11.2 0.0 2.9 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 EME70589.1 - 0.0032 16.6 0.8 0.031 13.4 0.2 2.5 2 0 0 2 2 2 1 FAD binding domain AlaDh_PNT_C PF01262.21 EME70589.1 - 0.0061 15.9 1.7 0.39 10.0 0.1 2.9 3 0 0 3 3 3 1 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_4 PF01565.23 EME70589.1 - 0.034 13.9 0.1 2.1 8.1 0.0 3.0 3 0 0 3 3 3 0 FAD binding domain HI0933_like PF03486.14 EME70589.1 - 0.053 12.2 0.7 9.3 4.8 0.2 3.5 3 1 1 4 4 4 0 HI0933-like protein Amino_oxidase PF01593.24 EME70589.1 - 0.11 11.7 0.1 2.2 7.5 0.0 2.5 3 0 0 3 3 3 0 Flavin containing amine oxidoreductase K_oxygenase PF13434.6 EME70589.1 - 0.22 10.6 0.0 0.88 8.6 0.0 1.8 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) Rieske PF00355.26 EME70590.1 - 6.7e-16 58.0 0.0 8.5e-16 57.7 0.0 1.1 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.6 EME70590.1 - 2.1e-13 50.1 0.0 2.4e-13 49.9 0.0 1.0 1 0 0 1 1 1 1 Rieske-like [2Fe-2S] domain Molybdopterin PF00384.22 EME70591.1 - 1.5e-71 241.6 0.0 3.7e-71 240.3 0.0 1.6 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 EME70591.1 - 4.6e-28 97.5 0.0 9.4e-28 96.5 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 EME70591.1 - 1.8e-16 59.8 0.2 4.1e-16 58.7 0.2 1.6 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Fer2_BFD PF04324.15 EME70591.1 - 6.1e-05 23.3 0.1 0.0002 21.6 0.1 1.9 2 0 0 2 2 2 1 BFD-like [2Fe-2S] binding domain HATPase_c PF02518.26 EME70592.1 - 4.7e-29 101.2 0.0 8.4e-29 100.3 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 EME70592.1 - 7.7e-19 67.5 0.1 4.1e-18 65.2 0.0 2.3 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain dCache_1 PF02743.18 EME70592.1 - 1e-14 54.9 0.0 1.8e-14 54.2 0.0 1.3 1 0 0 1 1 1 1 Cache domain HATPase_c_3 PF13589.6 EME70592.1 - 0.0011 18.8 0.0 0.0019 18.0 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 EME70592.1 - 0.012 15.6 0.0 0.025 14.5 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain CbiA PF01656.23 EME70593.1 - 6e-12 45.7 0.0 7.6e-12 45.4 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 EME70593.1 - 2e-09 37.6 0.0 6.7e-06 26.1 0.0 2.1 2 0 0 2 2 2 2 AAA domain MipZ PF09140.11 EME70593.1 - 3.6e-08 33.0 1.4 2.7e-07 30.1 0.0 2.3 1 1 2 3 3 3 1 ATPase MipZ ParA PF10609.9 EME70593.1 - 0.00019 21.0 0.4 0.00065 19.2 0.1 1.8 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase AAA_16 PF13191.6 EME70593.1 - 0.0044 17.4 0.1 0.0074 16.7 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain VirC1 PF07015.11 EME70593.1 - 0.015 14.6 0.2 0.15 11.3 0.1 2.0 2 0 0 2 2 2 0 VirC1 protein AAA_25 PF13481.6 EME70593.1 - 0.038 13.6 1.2 0.085 12.4 0.1 2.1 2 1 1 3 3 3 0 AAA domain AAA_26 PF13500.6 EME70593.1 - 0.085 12.7 0.7 0.28 11.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 EME70593.1 - 0.17 11.9 0.0 0.44 10.5 0.0 1.6 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) NACHT PF05729.12 EME70593.1 - 0.18 11.7 0.2 0.46 10.4 0.3 1.6 2 0 0 2 2 2 0 NACHT domain LpxK PF02606.14 EME70593.1 - 0.2 10.7 0.7 0.32 10.1 0.7 1.3 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase HATPase_c PF02518.26 EME70594.1 - 4e-20 72.4 0.0 7.7e-20 71.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HAMP PF00672.25 EME70594.1 - 2.4e-08 34.2 4.2 2.5e-08 34.2 0.4 3.0 2 1 1 3 3 3 1 HAMP domain HisKA PF00512.25 EME70594.1 - 7.8e-08 32.2 0.0 2.6e-07 30.6 0.0 2.0 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.6 EME70594.1 - 0.013 15.3 0.0 0.022 14.6 0.0 1.3 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF996 PF06195.13 EME70594.1 - 0.046 14.0 1.1 0.65 10.3 0.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF996) HATPase_c_2 PF13581.6 EME70594.1 - 0.12 12.3 0.2 1.3 9.0 0.0 2.4 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain DUF1077 PF06417.12 EME70594.1 - 0.13 12.3 0.0 0.24 11.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1077) Response_reg PF00072.24 EME70595.1 - 4.7e-31 107.3 0.0 8.1e-31 106.5 0.0 1.4 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 EME70595.1 - 3.7e-20 71.8 0.1 1.1e-19 70.3 0.0 1.8 2 0 0 2 2 2 1 Transcriptional regulatory protein, C terminal MarR_2 PF12802.7 EME70596.1 - 9.2e-15 54.3 0.1 1.6e-14 53.5 0.1 1.4 1 0 0 1 1 1 1 MarR family MarR PF01047.22 EME70596.1 - 6.7e-07 29.2 0.1 1.1e-06 28.5 0.1 1.2 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 EME70596.1 - 4.9e-06 26.9 0.2 1.4e-05 25.5 0.1 1.8 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_24 PF13412.6 EME70596.1 - 0.0086 15.6 0.1 0.025 14.1 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 EME70596.1 - 0.022 14.7 1.5 0.034 14.1 0.4 1.8 1 1 1 2 2 2 0 Crp-like helix-turn-helix domain HTH_34 PF13601.6 EME70596.1 - 0.077 13.2 0.0 0.12 12.6 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain Aminotran_4 PF01063.19 EME70597.1 - 2e-46 158.7 0.0 2.3e-46 158.4 0.0 1.0 1 0 0 1 1 1 1 Amino-transferase class IV MCPsignal PF00015.21 EME70598.1 - 3.1e-33 115.0 44.2 7.8e-31 107.2 23.5 2.9 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 EME70598.1 - 2.4e-08 34.2 0.3 2.4e-08 34.2 0.3 3.4 3 0 0 3 3 3 1 HAMP domain DUF948 PF06103.11 EME70598.1 - 6.3e-05 23.1 3.9 6.3e-05 23.1 3.9 5.4 4 1 2 6 6 5 2 Bacterial protein of unknown function (DUF948) Laminin_II PF06009.12 EME70598.1 - 0.0028 17.7 26.6 0.037 14.1 6.2 4.4 1 1 2 4 4 4 3 Laminin Domain II TACC_C PF05010.14 EME70598.1 - 0.0044 16.8 6.9 0.69 9.7 3.0 2.6 2 0 0 2 2 2 2 Transforming acidic coiled-coil-containing protein (TACC), C-terminal DUF3365 PF11845.8 EME70598.1 - 0.013 15.8 3.8 4 7.8 0.0 3.6 3 0 0 3 3 3 0 Protein of unknown function (DUF3365) BLOC1_2 PF10046.9 EME70598.1 - 0.048 13.9 14.3 2.6 8.4 0.2 4.5 2 2 1 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 AAA_13 PF13166.6 EME70598.1 - 0.12 11.0 18.9 0.31 9.6 16.5 2.1 1 1 1 2 2 2 0 AAA domain SKA1 PF07160.12 EME70598.1 - 0.16 11.8 8.6 3.2 7.5 2.9 2.8 2 1 0 2 2 2 0 Spindle and kinetochore-associated protein 1 Syntaxin-6_N PF09177.11 EME70598.1 - 0.2 12.2 8.6 0.87 10.2 1.6 3.5 2 1 0 2 2 2 0 Syntaxin 6, N-terminal DUF3042 PF11240.8 EME70598.1 - 0.22 11.6 0.1 0.22 11.6 0.1 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF3042) zf-C4H2 PF10146.9 EME70598.1 - 0.27 11.5 8.5 8.5 6.6 0.2 3.3 2 1 1 3 3 3 0 Zinc finger-containing protein V_ATPase_I PF01496.19 EME70598.1 - 0.3 9.0 10.3 0.47 8.3 10.3 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family PIN_8 PF18476.1 EME70598.1 - 0.31 10.8 10.8 0.52 10.1 2.9 2.8 1 1 2 3 3 3 0 PIN like domain DUF1664 PF07889.12 EME70598.1 - 0.49 10.4 19.6 4.1 7.5 3.3 4.3 3 2 2 5 5 4 0 Protein of unknown function (DUF1664) TMPIT PF07851.13 EME70598.1 - 0.79 8.9 5.4 3.9 6.6 1.4 2.4 2 0 0 2 2 2 0 TMPIT-like protein DUF2935 PF11155.8 EME70598.1 - 0.83 10.0 4.1 11 6.4 0.7 3.0 2 1 0 2 2 2 0 Domain of unknown function (DUF2935) Sec34 PF04136.15 EME70598.1 - 0.98 9.3 4.7 5.5 6.9 0.4 3.1 2 1 1 3 3 3 0 Sec34-like family Laminin_I PF06008.14 EME70598.1 - 2 8.0 25.6 0.49 10.1 8.5 3.7 1 1 2 3 3 3 0 Laminin Domain I CENP-F_leu_zip PF10473.9 EME70598.1 - 2.2 8.3 7.8 13 5.8 1.1 3.7 3 1 0 4 4 4 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF3450 PF11932.8 EME70598.1 - 4.6 6.5 34.1 0.025 13.9 1.0 3.8 3 2 2 5 5 5 0 Protein of unknown function (DUF3450) DUF4200 PF13863.6 EME70598.1 - 5.1 7.5 13.6 5.9 7.3 5.1 3.8 4 0 0 4 4 4 0 Domain of unknown function (DUF4200) zf-DNL PF05180.12 EME70599.1 - 0.00017 21.4 0.2 0.00018 21.4 0.2 1.1 1 0 0 1 1 1 1 DNL zinc finger Elf1 PF05129.13 EME70599.1 - 0.0028 17.7 0.0 0.0032 17.5 0.0 1.2 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like zf-LITAF-like PF10601.9 EME70599.1 - 0.015 15.5 0.3 0.023 15.0 0.3 1.3 1 0 0 1 1 1 0 LITAF-like zinc ribbon domain Lar_restr_allev PF14354.6 EME70599.1 - 0.016 15.6 0.1 0.017 15.5 0.1 1.2 1 0 0 1 1 1 0 Restriction alleviation protein Lar Cys_rich_CPXG PF14255.6 EME70599.1 - 0.017 15.0 0.1 0.022 14.7 0.1 1.3 1 0 0 1 1 1 0 Cysteine-rich CPXCG DUF5040 PF16443.5 EME70599.1 - 0.045 13.1 0.0 0.047 13.1 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF5040) Zn-ribbon_8 PF09723.10 EME70599.1 - 0.17 12.1 2.1 0.5 10.5 1.8 1.8 1 1 2 3 3 3 0 Zinc ribbon domain HD PF01966.22 EME70600.1 - 1.1e-19 70.8 0.0 1.8e-19 70.1 0.0 1.4 1 0 0 1 1 1 1 HD domain Response_reg PF00072.24 EME70600.1 - 4.5e-18 65.5 0.0 7.6e-18 64.7 0.0 1.4 1 0 0 1 1 1 1 Response regulator receiver domain HD_5 PF13487.6 EME70600.1 - 1.9e-17 63.2 0.1 4.9e-17 61.9 0.1 1.7 1 0 0 1 1 1 1 HD domain HDOD PF08668.12 EME70600.1 - 2.5e-06 27.1 0.3 2.1e-05 24.1 0.3 2.3 1 1 0 1 1 1 1 HDOD domain sCache_2 PF17200.4 EME70601.1 - 1.7e-40 138.4 0.8 5e-40 136.9 0.0 2.3 2 1 0 2 2 2 1 Single Cache domain 2 dCache_2 PF08269.11 EME70601.1 - 2.3e-35 122.2 9.2 5.8e-34 117.6 0.0 3.2 3 0 0 3 3 3 1 Cache domain MCPsignal PF00015.21 EME70601.1 - 4.8e-33 114.4 53.3 1.9e-32 112.5 27.4 2.9 2 1 1 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 EME70601.1 - 9.8e-12 45.1 1.2 9.8e-12 45.1 1.2 4.8 5 1 0 5 5 5 1 HAMP domain Cache_3-Cache_2 PF17201.4 EME70601.1 - 1.1e-09 37.9 0.0 1.1e-09 37.9 0.0 3.6 4 1 0 4 4 4 1 Cache 3/Cache 2 fusion domain DUF3450 PF11932.8 EME70601.1 - 0.00059 19.2 3.1 0.00059 19.2 3.1 3.5 3 1 1 4 4 4 1 Protein of unknown function (DUF3450) DUF1664 PF07889.12 EME70601.1 - 0.009 16.0 18.7 0.058 13.4 3.3 3.8 3 2 1 4 4 3 2 Protein of unknown function (DUF1664) DUF948 PF06103.11 EME70601.1 - 0.016 15.5 31.6 0.12 12.7 5.5 5.4 3 2 3 6 6 6 0 Bacterial protein of unknown function (DUF948) SKA1 PF07160.12 EME70601.1 - 0.059 13.2 10.3 0.087 12.7 0.6 2.4 2 0 0 2 2 2 0 Spindle and kinetochore-associated protein 1 COG5 PF10392.9 EME70601.1 - 0.15 12.3 4.4 1.3 9.2 0.2 2.7 2 1 0 2 2 2 0 Golgi transport complex subunit 5 KASH_CCD PF14662.6 EME70601.1 - 0.22 11.4 15.1 0.85 9.4 1.3 2.9 2 1 0 2 2 2 0 Coiled-coil region of CCDC155 or KASH TMPIT PF07851.13 EME70601.1 - 0.56 9.4 10.5 0.43 9.8 1.4 2.5 2 1 0 2 2 2 0 TMPIT-like protein Rab5-bind PF09311.11 EME70601.1 - 0.85 9.0 12.4 0.091 12.1 3.7 2.3 2 0 0 2 2 2 0 Rabaptin-like protein Spc7 PF08317.11 EME70601.1 - 1.3 7.8 15.7 0.31 9.9 2.0 2.4 2 0 0 2 2 2 0 Spc7 kinetochore protein Fib_alpha PF08702.10 EME70601.1 - 2.3 8.4 11.3 14 5.9 2.0 3.6 2 2 2 4 4 4 0 Fibrinogen alpha/beta chain family Sec34 PF04136.15 EME70601.1 - 2.3 8.1 8.8 19 5.1 0.3 3.9 2 2 1 3 3 3 0 Sec34-like family Leu_zip PF15294.6 EME70601.1 - 3.2 7.2 11.5 0.85 9.1 3.8 2.3 2 0 0 2 2 2 0 Leucine zipper Prominin PF05478.11 EME70601.1 - 3.5 5.5 9.5 1 7.2 1.4 2.1 1 1 1 2 2 2 0 Prominin zf-C4H2 PF10146.9 EME70601.1 - 3.9 7.7 14.0 0.73 10.1 4.1 2.5 2 1 0 2 2 2 0 Zinc finger-containing protein COG6 PF06419.11 EME70601.1 - 6.6 4.8 10.9 5.7 5.0 1.7 2.2 2 0 0 2 2 2 0 Conserved oligomeric complex COG6 IFT57 PF10498.9 EME70601.1 - 7.2 5.5 13.7 0.42 9.5 0.9 2.5 3 0 0 3 3 3 0 Intra-flagellar transport protein 57 Seryl_tRNA_N PF02403.22 EME70601.1 - 9.5 6.5 19.7 3.1 8.1 4.5 3.7 2 2 3 5 5 5 0 Seryl-tRNA synthetase N-terminal domain Allexi_40kDa PF05549.11 EME70601.1 - 9.9 5.6 7.5 9.5 5.6 1.2 2.4 2 0 0 2 2 2 0 Allexivirus 40kDa protein Aminotran_1_2 PF00155.21 EME70602.1 - 7e-73 245.9 0.0 8.1e-73 245.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 EME70602.1 - 3.7e-07 29.8 0.0 5e-07 29.4 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 EME70602.1 - 0.17 10.4 0.0 0.27 9.7 0.0 1.3 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Sel1 PF08238.12 EME70603.1 - 1.9e-17 63.3 39.0 0.00037 21.1 0.1 8.0 8 0 0 8 8 8 6 Sel1 repeat Hpt PF01627.23 EME70604.1 - 4.8e-05 23.5 0.3 0.00013 22.2 0.3 1.9 1 1 0 1 1 1 1 Hpt domain TetR_C_14 PF17754.1 EME70604.1 - 0.013 15.4 0.1 2.6 8.0 0.1 2.1 2 0 0 2 2 2 0 MftR C-terminal domain Response_reg PF00072.24 EME70605.1 - 1.4e-11 44.6 0.0 1.6e-11 44.3 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain GFO_IDH_MocA PF01408.22 EME70605.1 - 0.0096 16.7 0.0 0.011 16.5 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold SlyX PF04102.12 EME70607.1 - 1.3e-13 51.3 0.4 1.4e-13 51.2 0.4 1.0 1 0 0 1 1 1 1 SlyX DivIC PF04977.15 EME70607.1 - 0.011 15.4 0.2 0.012 15.4 0.2 1.1 1 0 0 1 1 1 0 Septum formation initiator TolA_bind_tri PF16331.5 EME70607.1 - 0.028 14.5 1.3 0.036 14.1 1.3 1.2 1 0 0 1 1 1 0 TolA binding protein trimerisation YabA PF06156.13 EME70607.1 - 0.053 14.2 0.0 0.055 14.1 0.0 1.0 1 0 0 1 1 1 0 Initiation control protein YabA APG6_N PF17675.1 EME70607.1 - 0.058 13.9 1.2 0.069 13.7 1.2 1.0 1 0 0 1 1 1 0 Apg6 coiled-coil region DUF4577 PF15145.6 EME70607.1 - 0.093 12.8 0.1 0.1 12.6 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4577) Erythro-docking PF09277.11 EME70607.1 - 0.48 10.4 6.3 1.8 8.5 5.9 2.0 1 1 1 2 2 2 0 Erythronolide synthase, docking PspB PF06667.12 EME70607.1 - 0.72 10.0 2.9 0.89 9.7 2.2 1.5 1 1 1 2 2 2 0 Phage shock protein B DUF5536 PF17688.1 EME70608.1 - 0.47 10.3 6.5 0.52 10.2 6.5 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5536) Pterin_4a PF01329.19 EME70609.1 - 5.1e-33 113.1 0.1 5.7e-33 112.9 0.1 1.0 1 0 0 1 1 1 1 Pterin 4 alpha carbinolamine dehydratase Sun2_CC2 PF18580.1 EME70609.1 - 0.0029 17.8 0.0 0.0058 16.8 0.0 1.5 1 0 0 1 1 1 1 SUN2 coiled coil domain 2 Zincin_1 PF06262.11 EME70610.1 - 4.2e-32 110.1 0.3 5.6e-32 109.7 0.3 1.1 1 0 0 1 1 1 1 Zincin-like metallopeptidase Reprolysin_3 PF13582.6 EME70610.1 - 0.057 13.9 0.1 0.1 13.1 0.1 1.4 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like DUF4953 PF16313.5 EME70610.1 - 0.062 12.5 0.3 0.1 11.8 0.3 1.3 1 0 0 1 1 1 0 Met-zincin Peptidase_M10 PF00413.24 EME70610.1 - 0.2 11.5 1.7 0.22 11.3 1.7 1.4 1 1 0 1 1 1 0 Matrixin Reprolysin_5 PF13688.6 EME70610.1 - 0.23 11.6 0.2 0.33 11.1 0.2 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12 Peptidase_M57 PF12388.8 EME70610.1 - 0.33 10.5 0.6 0.47 10.0 0.6 1.2 1 0 0 1 1 1 0 Dual-action HEIGH metallo-peptidase AAA_32 PF13654.6 EME70611.1 - 1.5e-190 634.4 0.0 1.8e-190 634.1 0.0 1.0 1 0 0 1 1 1 1 AAA domain Lon_C PF05362.13 EME70611.1 - 4.1e-08 33.0 0.1 1.1e-07 31.7 0.0 1.7 2 0 0 2 2 2 1 Lon protease (S16) C-terminal proteolytic domain GlnE PF03710.15 EME70611.1 - 0.0097 15.3 0.4 1.6 8.1 0.1 2.3 2 0 0 2 2 2 2 Glutamate-ammonia ligase adenylyltransferase GOLGA2L5 PF15070.6 EME70611.1 - 0.2 10.3 1.1 0.31 9.7 1.1 1.2 1 0 0 1 1 1 0 Putative golgin subfamily A member 2-like protein 5 SBP_bac_8 PF13416.6 EME70612.1 - 2.7e-17 63.5 0.0 6.7e-17 62.2 0.0 1.5 1 1 1 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 EME70612.1 - 4.1e-15 55.9 0.0 6.1e-15 55.3 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 EME70612.1 - 1.1e-06 28.6 0.1 8.6e-06 25.6 0.1 2.0 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 EME70612.1 - 2e-05 24.7 0.0 0.061 13.3 0.0 2.1 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein SoxZ PF08770.11 EME70613.1 - 2.9e-28 97.5 0.0 3.4e-28 97.2 0.0 1.0 1 0 0 1 1 1 1 Sulphur oxidation protein SoxZ SoxY PF13501.6 EME70614.1 - 9.4e-36 122.4 0.0 1.2e-35 122.1 0.0 1.1 1 0 0 1 1 1 1 Sulfur oxidation protein SoxY Desulfoferrodox PF01880.18 EME70614.1 - 0.0018 18.8 0.0 0.0031 18.1 0.0 1.4 1 1 0 1 1 1 1 Desulfoferrodoxin Hydrolase_4 PF12146.8 EME70616.1 - 1.5e-07 31.0 0.0 2e-07 30.5 0.0 1.2 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 EME70616.1 - 0.00021 21.0 0.0 0.00033 20.4 0.0 1.2 1 0 0 1 1 1 1 alpha/beta hydrolase fold HATPase_c PF02518.26 EME70617.1 - 1.5e-25 89.9 0.0 2.4e-25 89.2 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 EME70617.1 - 1.5e-18 66.6 0.0 4.7e-18 65.0 0.0 1.9 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_3 PF08447.12 EME70617.1 - 1.2e-15 57.5 0.0 3.1e-15 56.2 0.0 1.8 1 0 0 1 1 1 1 PAS fold PAS PF00989.25 EME70617.1 - 6.1e-14 52.0 0.0 1.5e-13 50.7 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 EME70617.1 - 2.4e-12 47.0 0.0 5.2e-12 45.9 0.0 1.6 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.10 EME70617.1 - 4.1e-12 46.3 0.2 5e-11 42.8 0.1 2.8 2 1 1 3 3 3 1 PAS fold HAMP PF00672.25 EME70617.1 - 6.1e-09 36.1 1.2 2.4e-08 34.3 1.2 2.1 1 0 0 1 1 1 1 HAMP domain PAS_8 PF13188.7 EME70617.1 - 1e-05 25.4 0.0 2.9e-05 24.0 0.0 1.8 1 0 0 1 1 1 1 PAS domain HATPase_c_3 PF13589.6 EME70617.1 - 0.0028 17.5 0.0 0.0055 16.5 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dCache_1 PF02743.18 EME70617.1 - 0.0034 17.2 0.0 0.0064 16.3 0.0 1.3 1 0 0 1 1 1 1 Cache domain PAS_11 PF14598.6 EME70617.1 - 0.028 14.5 0.0 0.05 13.7 0.0 1.3 1 0 0 1 1 1 0 PAS domain VWA_CoxE PF05762.14 EME70618.1 - 1.9e-12 47.0 0.2 2.2e-11 43.6 0.0 2.2 2 0 0 2 2 2 1 VWA domain containing CoxE-like protein Hemerythrin PF01814.23 EME70619.1 - 3.3e-12 47.1 0.7 4.1e-12 46.9 0.7 1.0 1 0 0 1 1 1 1 Hemerythrin HHE cation binding domain AAA_5 PF07728.14 EME70620.1 - 5.5e-13 49.1 0.0 8.9e-13 48.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 EME70620.1 - 1.4e-12 48.2 0.0 2.7e-12 47.2 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 EME70620.1 - 3.1e-06 27.7 2.1 7e-05 23.3 0.8 2.8 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 EME70620.1 - 3.6e-06 27.3 0.0 1.1e-05 25.7 0.0 1.8 2 0 0 2 2 2 1 AAA domain Sigma54_activat PF00158.26 EME70620.1 - 6.5e-06 25.9 0.0 0.0099 15.6 0.0 2.2 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_2 PF07724.14 EME70620.1 - 0.00076 19.6 0.0 0.0012 19.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) NACHT PF05729.12 EME70620.1 - 0.00079 19.4 0.2 0.0055 16.6 0.0 2.2 2 0 0 2 2 2 1 NACHT domain DUF2075 PF09848.9 EME70620.1 - 0.0011 18.3 0.0 0.0015 17.9 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) TIP49 PF06068.13 EME70620.1 - 0.004 16.4 0.1 0.011 14.9 0.0 1.7 2 0 0 2 2 2 1 TIP49 P-loop domain TsaE PF02367.17 EME70620.1 - 0.0088 16.0 0.0 0.015 15.3 0.0 1.4 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_7 PF12775.7 EME70620.1 - 0.0097 15.4 0.0 0.015 14.8 0.0 1.2 1 0 0 1 1 1 1 P-loop containing dynein motor region RNA_helicase PF00910.22 EME70620.1 - 0.0098 16.3 0.0 0.057 13.8 0.0 2.3 2 1 0 2 2 2 1 RNA helicase AAA_30 PF13604.6 EME70620.1 - 0.01 15.6 0.0 0.018 14.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 EME70620.1 - 0.013 16.1 0.0 0.035 14.6 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_3 PF07726.11 EME70620.1 - 0.016 15.1 0.1 1 9.2 0.0 2.4 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.6 EME70620.1 - 0.025 14.9 0.1 0.084 13.2 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_11 PF13086.6 EME70620.1 - 0.026 14.3 0.0 0.037 13.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain RuvB_N PF05496.12 EME70620.1 - 0.027 14.2 0.2 0.055 13.2 0.0 1.5 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain AAA_33 PF13671.6 EME70620.1 - 0.028 14.6 0.0 0.048 13.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain ATPase PF06745.13 EME70620.1 - 0.041 13.2 0.0 0.082 12.2 0.0 1.4 1 0 0 1 1 1 0 KaiC Sigma54_activ_2 PF14532.6 EME70620.1 - 0.044 13.9 0.1 0.25 11.4 0.0 2.3 2 1 0 2 2 2 0 Sigma-54 interaction domain Mg_chelatase PF01078.21 EME70620.1 - 0.059 12.8 0.0 0.11 11.8 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI gag-asp_proteas PF13975.6 EME70620.1 - 0.14 12.8 0.0 0.25 11.9 0.0 1.4 1 0 0 1 1 1 0 gag-polyprotein putative aspartyl protease AAA_14 PF13173.6 EME70620.1 - 0.17 12.0 0.0 0.36 10.9 0.0 1.6 1 1 0 1 1 1 0 AAA domain Asp_protease_2 PF13650.6 EME70620.1 - 0.19 12.4 0.0 0.36 11.5 0.0 1.4 1 0 0 1 1 1 0 Aspartyl protease FliJ PF02050.16 EME70621.1 - 1.2e-07 32.0 14.2 1.6e-07 31.6 14.2 1.2 1 0 0 1 1 1 1 Flagellar FliJ protein Cob_adeno_trans PF01923.18 EME70621.1 - 0.014 15.6 1.9 0.024 14.8 1.9 1.3 1 1 0 1 1 1 0 Cobalamin adenosyltransferase DUF1843 PF08898.10 EME70621.1 - 0.13 12.8 4.6 6.2 7.4 0.1 3.7 2 2 2 4 4 4 0 Domain of unknown function (DUF1843) ATP-synt_ab PF00006.25 EME70622.1 - 9.7e-74 247.6 0.0 1.5e-73 247.0 0.0 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain T3SS_ATPase_C PF18269.1 EME70622.1 - 2.9e-21 75.1 0.2 4.7e-21 74.4 0.2 1.3 1 0 0 1 1 1 1 T3SS EscN ATPase C-terminal domain ATP-synt_ab_N PF02874.23 EME70622.1 - 0.0026 18.2 1.1 0.0062 17.0 1.1 1.6 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain ABC_tran PF00005.27 EME70622.1 - 0.017 15.6 0.0 0.034 14.7 0.0 1.5 1 0 0 1 1 1 0 ABC transporter RsgA_GTPase PF03193.16 EME70622.1 - 0.078 12.9 0.1 0.16 11.9 0.1 1.4 1 0 0 1 1 1 0 RsgA GTPase DUF87 PF01935.17 EME70622.1 - 0.088 12.9 0.0 0.14 12.2 0.0 1.3 1 0 0 1 1 1 0 Helicase HerA, central domain Response_reg PF00072.24 EME70623.1 - 4.4e-29 100.9 0.1 6.5e-29 100.4 0.1 1.3 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 EME70623.1 - 6.4e-21 74.2 0.0 1.5e-20 73.1 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal ABC1 PF03109.16 EME70624.1 - 1.4e-35 122.1 0.0 2.4e-35 121.3 0.0 1.4 1 0 0 1 1 1 1 ABC1 family APH PF01636.23 EME70624.1 - 4.7e-05 23.4 4.0 0.00089 19.2 0.6 3.2 2 1 0 2 2 2 1 Phosphotransferase enzyme family Pkinase PF00069.25 EME70624.1 - 0.015 14.7 0.0 0.032 13.6 0.0 1.6 2 0 0 2 2 2 0 Protein kinase domain Rab_bind PF16704.5 EME70624.1 - 0.085 12.9 0.0 0.18 11.9 0.0 1.5 1 0 0 1 1 1 0 Rab binding domain Ubie_methyltran PF01209.18 EME70625.1 - 3.6e-79 265.4 0.0 4.1e-79 265.2 0.0 1.0 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_11 PF08241.12 EME70625.1 - 7.4e-21 74.6 0.0 1.6e-20 73.5 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 EME70625.1 - 9.2e-20 71.2 0.0 3.4e-19 69.3 0.0 2.0 3 0 0 3 3 3 1 Methyltransferase domain Methyltransf_31 PF13847.6 EME70625.1 - 4.2e-10 39.6 0.0 5.4e-10 39.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 EME70625.1 - 2e-09 38.1 0.0 3.3e-09 37.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 EME70625.1 - 2.6e-07 30.6 0.0 4.2e-07 29.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.15 EME70625.1 - 0.00015 21.7 0.0 0.00042 20.2 0.0 1.8 1 1 0 1 1 1 1 Hypothetical methyltransferase MTS PF05175.14 EME70625.1 - 0.00095 18.7 0.0 0.0062 16.1 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase small domain Fapy_DNA_glyco PF01149.24 EME70626.1 - 2.7e-31 108.6 0.1 3.9e-31 108.1 0.1 1.2 1 0 0 1 1 1 1 Formamidopyrimidine-DNA glycosylase N-terminal domain H2TH PF06831.14 EME70626.1 - 1.1e-26 92.6 0.0 1.6e-26 92.1 0.0 1.3 1 0 0 1 1 1 1 Formamidopyrimidine-DNA glycosylase H2TH domain zf-FPG_IleRS PF06827.14 EME70626.1 - 0.005 16.7 0.1 0.005 16.7 0.1 2.7 3 0 0 3 3 3 1 Zinc finger found in FPG and IleRS ECH_1 PF00378.20 EME70628.1 - 2.4e-88 295.7 0.9 2.7e-88 295.5 0.9 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 EME70628.1 - 5.8e-36 124.7 3.5 1.5e-35 123.3 2.8 1.6 1 1 1 2 2 2 1 Enoyl-CoA hydratase/isomerase Peptidase_S49 PF01343.18 EME70628.1 - 0.031 14.2 0.0 2.9 7.8 0.0 2.4 2 0 0 2 2 2 0 Peptidase family S49 Ribosomal_S20p PF01649.18 EME70629.1 - 3.9e-28 97.9 7.8 4.3e-28 97.8 7.8 1.0 1 0 0 1 1 1 1 Ribosomal protein S20 DUF677 PF05055.12 EME70629.1 - 0.12 11.3 1.4 0.27 10.1 1.4 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF677) DnaA_N PF11638.8 EME70630.1 - 5.9e-20 70.8 0.0 7.2e-20 70.5 0.0 1.1 1 0 0 1 1 1 1 DnaA N-terminal domain SPOR PF05036.13 EME70631.1 - 0.052 13.9 0.0 0.1 13.0 0.0 1.4 1 0 0 1 1 1 0 Sporulation related domain DEC-1_N PF04625.13 EME70631.1 - 0.14 11.2 5.0 0.21 10.6 5.0 1.3 1 0 0 1 1 1 0 DEC-1 protein, N-terminal region Carb_anhydrase PF00194.21 EME70632.1 - 7.5e-44 150.2 0.0 1.5e-43 149.2 0.0 1.4 1 1 0 1 1 1 1 Eukaryotic-type carbonic anhydrase TAT_signal PF10518.9 EME70632.1 - 0.00059 19.6 0.8 0.00059 19.6 0.8 2.6 4 0 0 4 4 4 1 TAT (twin-arginine translocation) pathway signal sequence AMP-binding PF00501.28 EME70633.1 - 4.3e-42 144.2 0.0 6.1e-42 143.7 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme ACAS_N PF16177.5 EME70633.1 - 3.3e-09 36.5 0.1 8.9e-09 35.1 0.1 1.8 1 0 0 1 1 1 1 Acetyl-coenzyme A synthetase N-terminus AMP-binding_C PF13193.6 EME70633.1 - 2.8e-07 31.4 0.6 9.1e-07 29.8 0.0 2.1 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain STAS_2 PF13466.6 EME70634.1 - 2.2e-11 43.9 0.1 2.5e-11 43.7 0.1 1.1 1 0 0 1 1 1 1 STAS domain STAS PF01740.21 EME70634.1 - 1.1e-08 34.7 0.0 1.2e-08 34.6 0.0 1.0 1 0 0 1 1 1 1 STAS domain DnaJ PF00226.31 EME70635.1 - 4.4e-06 26.7 0.0 7.1e-06 26.1 0.0 1.4 1 0 0 1 1 1 1 DnaJ domain FtsK_4TM PF13491.6 EME70635.1 - 0.046 13.4 1.2 0.046 13.4 1.2 2.0 1 1 1 2 2 2 0 4TM region of DNA translocase FtsK/SpoIIIE Vma12 PF11712.8 EME70635.1 - 0.11 12.6 0.3 0.19 11.8 0.3 1.4 1 0 0 1 1 1 0 Endoplasmic reticulum-based factor for assembly of V-ATPase Phage_holin_3_6 PF07332.11 EME70635.1 - 2.3 8.3 13.3 4.8 7.3 0.8 2.5 1 1 1 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III NTP_transferase PF00483.23 EME70636.1 - 5.3e-24 85.2 0.0 6.7e-24 84.8 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 EME70636.1 - 2.4e-07 31.2 0.1 3.3e-07 30.8 0.1 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain UDPG_MGDP_dh_N PF03721.14 EME70637.1 - 6.7e-69 231.2 0.2 1e-68 230.6 0.2 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 EME70637.1 - 1.8e-38 130.7 0.0 6.7e-38 128.8 0.0 2.0 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 EME70637.1 - 6e-35 119.8 0.2 4.5e-31 107.4 0.0 2.9 3 0 0 3 3 3 2 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 3HCDH_N PF02737.18 EME70637.1 - 1.2e-05 25.3 0.1 3.2e-05 23.9 0.1 1.7 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.17 EME70637.1 - 3.5e-05 24.3 0.1 0.015 15.8 0.0 3.0 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 EME70637.1 - 0.0012 19.0 0.3 0.03 14.5 0.1 2.7 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.16 EME70637.1 - 0.0042 16.7 0.0 0.0089 15.7 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_10 PF13460.6 EME70637.1 - 0.013 15.4 1.3 0.013 15.4 1.3 2.2 2 1 0 2 2 2 0 NAD(P)H-binding FAD_binding_3 PF01494.19 EME70637.1 - 0.013 14.7 0.0 0.018 14.3 0.0 1.3 1 0 0 1 1 1 0 FAD binding domain OTCace PF00185.24 EME70637.1 - 0.018 15.1 0.1 2.7 8.0 0.0 3.1 3 0 0 3 3 3 0 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Pyr_redox PF00070.27 EME70637.1 - 0.025 15.1 0.0 0.076 13.6 0.0 1.9 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_Gly3P_dh_N PF01210.23 EME70637.1 - 0.043 13.8 0.0 0.23 11.4 0.0 2.3 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AlaDh_PNT_C PF01262.21 EME70637.1 - 0.076 12.3 0.7 0.21 10.9 0.7 1.8 1 1 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain AnmK PF03702.14 EME70637.1 - 0.093 11.8 0.1 0.33 10.0 0.0 1.8 2 0 0 2 2 2 0 Anhydro-N-acetylmuramic acid kinase ADH_zinc_N PF00107.26 EME70637.1 - 0.39 10.7 4.0 1.6 8.7 0.1 3.4 3 1 1 4 4 4 0 Zinc-binding dehydrogenase DUF2971 PF11185.8 EME70638.1 - 0.032 15.4 0.0 0.072 14.3 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2971) Tox-ART-HYD1 PF15633.6 EME70638.1 - 0.036 14.7 0.0 0.052 14.2 0.0 1.3 1 0 0 1 1 1 0 HYD1 signature containing ADP-ribosyltransferase PDDEXK_3 PF13366.6 EME70639.1 - 6.2e-35 120.1 0.0 7e-35 119.9 0.0 1.0 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily PGM_PMM_I PF02878.16 EME70640.1 - 1.6e-33 115.3 0.2 2.8e-33 114.6 0.2 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_III PF02880.16 EME70640.1 - 3.3e-29 101.4 0.0 6e-29 100.6 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_II PF02879.16 EME70640.1 - 2.2e-14 53.9 0.0 1e-12 48.6 0.1 2.6 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.20 EME70640.1 - 3.7e-08 33.4 0.0 1e-07 32.0 0.0 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain PGM_PMM_I PF02878.16 EME70641.1 - 2e-31 108.6 0.0 3.2e-31 107.9 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 EME70641.1 - 8.5e-22 77.7 0.0 1.9e-21 76.6 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 EME70641.1 - 3.8e-21 75.4 0.0 8.6e-21 74.3 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 EME70641.1 - 5.7e-13 48.8 0.2 1.4e-12 47.6 0.2 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain DUF2218 PF09981.9 EME70641.1 - 0.047 14.1 0.0 0.15 12.5 0.0 1.8 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2218) CBS PF00571.28 EME70642.1 - 6.4e-23 81.0 2.3 5.6e-13 49.1 0.5 2.1 2 0 0 2 2 2 2 CBS domain Phasin_2 PF09361.10 EME70643.1 - 1.8e-20 73.0 10.7 2.1e-20 72.8 10.7 1.0 1 0 0 1 1 1 1 Phasin protein PTH2 PF01981.16 EME70643.1 - 0.018 15.4 1.2 0.021 15.1 1.2 1.1 1 0 0 1 1 1 0 Peptidyl-tRNA hydrolase PTH2 SNARE_assoc PF09335.11 EME70644.1 - 1.5e-09 38.4 7.4 1.5e-09 38.4 7.4 1.6 2 0 0 2 2 2 1 SNARE associated Golgi protein PT-VENN PF04829.13 EME70644.1 - 0.16 12.0 1.4 0.31 11.1 1.4 1.4 1 0 0 1 1 1 0 Pre-toxin domain with VENN motif PAS_7 PF12860.7 EME70645.1 - 9.1e-28 96.7 0.0 1.9e-13 50.6 0.0 3.5 3 0 0 3 3 3 2 PAS fold HATPase_c PF02518.26 EME70645.1 - 8.6e-22 77.8 0.0 1.8e-21 76.7 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 EME70645.1 - 3.9e-15 55.5 0.1 0.00016 21.6 0.0 4.1 3 0 0 3 3 3 3 PAS domain HisKA PF00512.25 EME70645.1 - 1.9e-14 53.4 0.9 7.4e-14 51.5 0.0 2.7 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.10 EME70645.1 - 1.5e-10 41.3 8.3 0.0014 18.9 0.3 4.7 4 0 0 4 4 4 3 PAS fold PAS PF00989.25 EME70645.1 - 3.4e-08 33.5 0.0 0.82 9.7 0.0 4.0 4 0 0 4 4 4 3 PAS fold HATPase_c_2 PF13581.6 EME70645.1 - 0.00025 21.0 0.3 0.00073 19.5 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain PsbX PF06596.11 EME70645.1 - 3.8 7.6 5.1 8.2 6.5 5.1 1.6 1 0 0 1 1 1 0 Photosystem II reaction centre X protein (PsbX) Hydrolase_4 PF12146.8 EME70646.1 - 6.4e-21 74.7 0.0 3e-20 72.5 0.0 1.9 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 EME70646.1 - 1.1e-18 67.8 0.0 3.4e-18 66.2 0.0 1.7 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 EME70646.1 - 5.5e-17 63.1 5.3 7.3e-17 62.7 5.3 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.21 EME70646.1 - 1.2e-10 41.2 0.0 7.6e-05 22.3 0.0 2.5 2 1 0 2 2 2 2 Prolyl oligopeptidase family Peptidase_S15 PF02129.18 EME70646.1 - 8.5e-08 32.1 0.5 9.1e-07 28.7 0.5 2.0 1 1 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) DLH PF01738.18 EME70646.1 - 2.6e-05 23.9 0.0 9.8e-05 22.0 0.0 1.8 2 0 0 2 2 2 1 Dienelactone hydrolase family Abhydrolase_3 PF07859.13 EME70646.1 - 0.00025 20.9 0.2 0.00049 20.0 0.2 1.4 1 0 0 1 1 1 1 alpha/beta hydrolase fold Peptidase_S28 PF05577.12 EME70646.1 - 0.00033 19.6 0.0 0.00046 19.1 0.0 1.2 1 0 0 1 1 1 1 Serine carboxypeptidase S28 Abhydrolase_4 PF08386.10 EME70646.1 - 0.0005 20.2 0.0 0.001 19.1 0.0 1.5 1 0 0 1 1 1 1 TAP-like protein FSH1 PF03959.13 EME70646.1 - 0.0037 16.9 0.0 3.4 7.3 0.0 2.8 3 0 0 3 3 3 2 Serine hydrolase (FSH1) VirJ PF06057.11 EME70646.1 - 0.025 14.5 0.1 0.065 13.1 0.0 1.6 2 0 0 2 2 2 0 Bacterial virulence protein (VirJ) DUF3530 PF12048.8 EME70646.1 - 0.053 12.9 0.0 0.083 12.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3530) Response_reg PF00072.24 EME70647.1 - 9.7e-24 83.7 0.2 1.1e-23 83.5 0.2 1.0 1 0 0 1 1 1 1 Response regulator receiver domain EAL PF00563.20 EME70648.1 - 1.6e-74 250.4 0.0 3.6e-74 249.3 0.0 1.6 1 0 0 1 1 1 1 EAL domain GGDEF PF00990.21 EME70648.1 - 5.7e-40 136.7 0.1 1.6e-39 135.3 0.1 1.8 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain PAS_4 PF08448.10 EME70648.1 - 7.1e-31 106.7 0.8 6.4e-12 45.7 0.2 3.8 3 0 0 3 3 3 3 PAS fold PAS PF00989.25 EME70648.1 - 2.1e-29 101.8 0.1 6.7e-12 45.4 0.0 3.7 4 0 0 4 4 4 3 PAS fold PAS_9 PF13426.7 EME70648.1 - 2.7e-24 85.4 0.0 1.1e-12 48.1 0.0 3.6 3 0 0 3 3 3 3 PAS domain PAS_8 PF13188.7 EME70648.1 - 8.4e-16 57.6 0.3 1.8e-06 27.8 0.0 4.8 4 0 0 4 4 4 3 PAS domain Response_reg PF00072.24 EME70648.1 - 1.7e-14 54.0 0.0 1e-13 51.4 0.0 2.5 3 0 0 3 3 3 1 Response regulator receiver domain HisKA PF00512.25 EME70648.1 - 5.5e-09 35.9 0.7 7.4e-08 32.3 0.0 3.1 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_7 PF12860.7 EME70648.1 - 0.051 13.7 0.0 3.3 7.9 0.0 3.1 3 0 0 3 3 3 0 PAS fold Hydrolase PF00702.26 EME70648.1 - 0.15 12.4 0.6 1 9.6 0.1 2.5 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase FtsJ PF01728.19 EME70650.1 - 8.2e-10 39.1 0.0 1.2e-09 38.6 0.0 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase Lip_A_acyltrans PF03279.13 EME70651.1 - 2.8e-51 174.4 0.0 3.4e-51 174.2 0.0 1.0 1 0 0 1 1 1 1 Bacterial lipid A biosynthesis acyltransferase LpxK PF02606.14 EME70652.1 - 6e-86 288.5 0.0 7e-86 288.3 0.0 1.0 1 0 0 1 1 1 1 Tetraacyldisaccharide-1-P 4'-kinase Thymidylate_kin PF02223.17 EME70652.1 - 0.27 10.9 0.0 0.41 10.3 0.0 1.3 1 0 0 1 1 1 0 Thymidylate kinase Glycos_transf_N PF04413.16 EME70653.1 - 1.5e-55 187.6 0.0 3.2e-55 186.5 0.0 1.5 2 0 0 2 2 2 1 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) Glyco_trans_1_2 PF13524.6 EME70653.1 - 0.024 15.0 0.0 0.059 13.8 0.0 1.7 1 0 0 1 1 1 0 Glycosyl transferases group 1 NQR2_RnfD_RnfE PF03116.15 EME70653.1 - 0.058 12.8 0.2 0.096 12.1 0.2 1.3 1 0 0 1 1 1 0 NQR2, RnfD, RnfE family DUF374 PF04028.13 EME70656.1 - 5.1e-30 102.8 0.7 7.9e-30 102.2 0.1 1.6 2 0 0 2 2 2 1 Domain of unknown function (DUF374) ABC_membrane PF00664.23 EME70657.1 - 2.3e-54 184.9 4.1 2.8e-54 184.6 4.1 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 EME70657.1 - 1.6e-33 116.1 0.0 3.5e-33 115.0 0.0 1.6 2 0 0 2 2 1 1 ABC transporter SMC_N PF02463.19 EME70657.1 - 9e-09 35.1 0.0 1e-06 28.4 0.0 2.3 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 EME70657.1 - 0.0001 22.7 0.2 0.00029 21.2 0.2 1.8 1 0 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 EME70657.1 - 0.00012 22.1 0.0 0.00091 19.2 0.0 2.4 3 0 0 3 3 3 1 RsgA GTPase DEAD PF00270.29 EME70657.1 - 0.00064 19.5 0.1 0.0039 17.0 0.0 2.1 2 1 1 3 3 3 1 DEAD/DEAH box helicase AAA_22 PF13401.6 EME70657.1 - 0.0016 18.7 0.2 0.014 15.6 0.2 2.4 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.6 EME70657.1 - 0.0024 17.6 0.0 0.18 11.5 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 EME70657.1 - 0.0054 16.5 0.2 0.014 15.1 0.2 1.7 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 EME70657.1 - 0.012 15.4 0.1 0.027 14.2 0.1 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain Cytidylate_kin PF02224.18 EME70657.1 - 0.013 15.2 0.0 0.022 14.5 0.0 1.3 1 0 0 1 1 1 0 Cytidylate kinase AAA_21 PF13304.6 EME70657.1 - 0.016 15.0 0.2 0.31 10.8 0.0 2.1 1 1 1 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system ABC_ATPase PF09818.9 EME70657.1 - 0.023 13.5 0.6 0.14 11.0 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class MMR_HSR1 PF01926.23 EME70657.1 - 0.039 14.0 0.0 0.11 12.6 0.0 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_28 PF13521.6 EME70657.1 - 0.047 13.9 0.2 3.1 8.0 0.0 2.5 1 1 0 2 2 2 0 AAA domain Zeta_toxin PF06414.12 EME70657.1 - 0.053 12.8 0.0 0.19 11.0 0.0 1.9 1 0 0 1 1 1 0 Zeta toxin AAA PF00004.29 EME70657.1 - 0.056 13.9 0.2 1.4 9.4 0.2 2.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.21 EME70657.1 - 0.1 12.0 0.0 0.21 10.9 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Dynamin_N PF00350.23 EME70657.1 - 0.13 12.3 0.0 1.4 9.0 0.0 2.2 2 0 0 2 2 2 0 Dynamin family AAA_23 PF13476.6 EME70657.1 - 0.29 11.6 0.0 0.55 10.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain Cytochrom_C1 PF02167.15 EME70658.1 - 1.6e-92 309.2 0.0 2.9e-92 308.4 0.0 1.4 1 0 0 1 1 1 1 Cytochrome C1 family Cytochrome_B PF00033.19 EME70658.1 - 1.2e-76 256.7 18.6 2.5e-76 255.7 18.6 1.5 1 0 0 1 1 1 1 Cytochrome b/b6/petB Cytochrom_B_N_2 PF13631.6 EME70658.1 - 4e-42 144.1 15.9 5.8e-41 140.3 11.4 2.5 2 0 0 2 2 2 2 Cytochrome b(N-terminal)/b6/petB Cytochrom_B_C PF00032.17 EME70658.1 - 3.7e-40 136.4 3.2 3.7e-40 136.4 3.2 3.7 5 1 0 5 5 5 1 Cytochrome b(C-terminal)/b6/petD Ni_hydr_CYTB PF01292.20 EME70658.1 - 0.00097 18.8 4.1 0.00097 18.8 4.1 4.6 2 1 1 4 4 4 2 Prokaryotic cytochrome b561 Cytochrome_CBB3 PF13442.6 EME70658.1 - 0.034 14.4 0.0 0.1 12.9 0.0 1.8 1 0 0 1 1 1 0 Cytochrome C oxidase, cbb3-type, subunit III Cytochrom_C PF00034.21 EME70658.1 - 0.15 13.2 0.0 0.36 12.0 0.0 1.7 1 0 0 1 1 1 0 Cytochrome c Rieske PF00355.26 EME70659.1 - 1.2e-12 47.6 0.0 1.9e-12 47.0 0.0 1.4 1 1 0 1 1 1 1 Rieske [2Fe-2S] domain PNRC PF15365.6 EME70659.1 - 0.68 9.8 3.4 1.2 9.0 3.4 1.3 1 0 0 1 1 1 0 Proline-rich nuclear receptor coactivator motif SpoU_methylase PF00588.19 EME70660.1 - 8.2e-17 61.7 0.0 9.1e-17 61.5 0.0 1.0 1 0 0 1 1 1 1 SpoU rRNA Methylase family Methyltransf_25 PF13649.6 EME70661.1 - 3.1e-15 56.7 0.0 5.9e-15 55.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 EME70661.1 - 1.9e-13 51.0 0.0 3e-13 50.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 EME70661.1 - 2.2e-11 44.3 0.0 3.9e-11 43.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 EME70661.1 - 2.3e-10 40.5 0.0 2.7e-10 40.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 EME70661.1 - 1.8e-09 37.7 0.0 2.2e-09 37.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 EME70661.1 - 0.00014 21.3 0.0 0.00017 21.0 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family PCMT PF01135.19 EME70661.1 - 0.00066 19.5 0.0 0.0012 18.6 0.0 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_4 PF02390.17 EME70661.1 - 0.00075 19.0 0.0 0.0027 17.2 0.0 1.9 2 1 0 2 2 2 1 Putative methyltransferase MTS PF05175.14 EME70661.1 - 0.0014 18.2 0.2 0.0044 16.6 0.0 1.8 1 1 1 2 2 2 1 Methyltransferase small domain Methyltransf_9 PF08003.11 EME70661.1 - 0.0022 17.0 0.0 0.0029 16.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) CMAS PF02353.20 EME70661.1 - 0.0064 15.8 0.0 0.0087 15.4 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase NodS PF05401.11 EME70661.1 - 0.022 14.4 0.0 0.029 14.0 0.0 1.1 1 0 0 1 1 1 0 Nodulation protein S (NodS) Methyltransf_34 PF11312.8 EME70661.1 - 0.03 13.6 0.0 0.2 10.9 0.0 1.9 2 0 0 2 2 2 0 Putative SAM-dependent methyltransferase DUF938 PF06080.12 EME70661.1 - 0.039 13.7 0.0 0.047 13.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF938) Methyltransf_19 PF04672.12 EME70661.1 - 0.043 13.3 0.1 0.18 11.3 0.1 1.9 1 1 0 1 1 1 0 S-adenosyl methyltransferase CheR PF01739.18 EME70661.1 - 0.059 12.8 0.0 4.7 6.7 0.0 2.3 1 1 1 2 2 2 0 CheR methyltransferase, SAM binding domain 3HCDH_N PF02737.18 EME70661.1 - 0.085 12.7 0.0 0.19 11.6 0.0 1.6 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Methyltransf_16 PF10294.9 EME70661.1 - 0.21 11.3 0.0 0.28 10.9 0.0 1.2 1 0 0 1 1 1 0 Lysine methyltransferase SPOUT_MTase PF02590.17 EME70663.1 - 3.5e-43 147.3 0.0 3.9e-43 147.1 0.0 1.0 1 0 0 1 1 1 1 Predicted SPOUT methyltransferase RsfS PF02410.15 EME70664.1 - 8.1e-21 74.3 0.0 9.9e-21 74.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal silencing factor during starvation CTP_transf_like PF01467.26 EME70665.1 - 3.6e-18 66.1 0.0 4.3e-18 65.9 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase-like Aldedh PF00171.22 EME70666.1 - 2.2e-15 56.2 4.2 7e-14 51.2 0.8 2.1 1 1 1 2 2 2 2 Aldehyde dehydrogenase family AA_kinase PF00696.28 EME70667.1 - 4.8e-42 144.2 1.0 6.5e-42 143.8 1.0 1.2 1 0 0 1 1 1 1 Amino acid kinase family PUA PF01472.20 EME70667.1 - 3.1e-22 78.3 0.3 3.1e-22 78.3 0.3 2.7 3 0 0 3 3 3 1 PUA domain PUA_3 PF17785.1 EME70667.1 - 0.0039 17.0 0.1 0.014 15.2 0.0 1.9 2 0 0 2 2 2 1 PUA-like domain UPF0113 PF03657.13 EME70667.1 - 0.0056 16.9 0.0 0.012 15.8 0.0 1.5 1 0 0 1 1 1 1 UPF0113 PUA domain GTP1_OBG PF01018.22 EME70668.1 - 1.1e-59 200.5 2.6 1.1e-59 200.5 2.6 1.6 2 0 0 2 2 2 1 GTP1/OBG MMR_HSR1 PF01926.23 EME70668.1 - 2.8e-25 88.6 0.0 4.2e-25 88.1 0.0 1.3 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 EME70668.1 - 1.1e-13 51.1 0.0 5.4e-13 48.7 0.0 1.9 1 1 0 1 1 1 1 Ferrous iron transport protein B Arf PF00025.21 EME70668.1 - 0.033 13.6 0.0 0.095 12.2 0.0 1.7 1 1 0 1 1 1 0 ADP-ribosylation factor family Ribosomal_L27 PF01016.19 EME70669.1 - 1.7e-38 130.5 2.5 1.9e-38 130.3 2.5 1.0 1 0 0 1 1 1 1 Ribosomal L27 protein Ribosomal_L21p PF00829.21 EME70670.1 - 1.8e-39 134.0 2.6 2e-39 133.9 2.6 1.0 1 0 0 1 1 1 1 Ribosomal prokaryotic L21 protein Hydrolase_like PF13242.6 EME70670.1 - 0.073 13.1 0.1 0.082 13.0 0.1 1.3 1 0 0 1 1 1 0 HAD-hyrolase-like DUF1289 PF06945.13 EME70671.1 - 1.1e-18 66.8 2.4 1.2e-18 66.6 2.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1289) PFK PF00365.20 EME70672.1 - 5.1e-49 167.1 0.0 6.1e-49 166.9 0.0 1.1 1 0 0 1 1 1 1 Phosphofructokinase BclA_C PF18573.1 EME70672.1 - 0.017 15.0 0.0 0.037 13.9 0.0 1.5 1 0 0 1 1 1 0 BclA C-terminal domain DUF150 PF02576.17 EME70673.1 - 2.7e-26 91.8 0.1 3.9e-26 91.3 0.1 1.3 1 0 0 1 1 1 1 RimP N-terminal domain DUF150_C PF17384.2 EME70673.1 - 7.6e-14 51.6 0.0 2.7e-13 49.8 0.0 1.8 2 0 0 2 2 2 1 RimP C-terminal SH3 domain TOBE PF03459.17 EME70673.1 - 0.07 13.4 0.1 3.6 8.0 0.1 2.3 2 0 0 2 2 2 0 TOBE domain NusA_N PF08529.11 EME70674.1 - 5.1e-36 123.7 5.2 7.4e-36 123.2 3.9 2.0 2 0 0 2 2 2 1 NusA N-terminal domain KH_5 PF13184.6 EME70674.1 - 9.4e-31 105.7 0.8 1.4e-28 98.7 0.1 2.9 3 0 0 3 3 3 1 NusA-like KH domain HHH_5 PF14520.6 EME70674.1 - 1.1e-07 32.3 2.7 0.012 16.2 1.7 2.9 2 0 0 2 2 2 2 Helix-hairpin-helix domain S1 PF00575.23 EME70674.1 - 5.9e-06 26.5 0.0 2.1e-05 24.8 0.0 2.0 1 0 0 1 1 1 1 S1 RNA binding domain KH_2 PF07650.17 EME70674.1 - 2.5e-05 24.0 0.2 0.00034 20.4 0.0 2.8 2 0 0 2 2 2 1 KH domain KH_1 PF00013.29 EME70674.1 - 0.00054 19.7 0.0 0.087 12.7 0.0 2.6 2 0 0 2 2 2 1 KH domain DUF448 PF04296.13 EME70675.1 - 5.6e-21 74.2 0.0 1e-20 73.3 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF448) Ribosomal_L7Ae PF01248.26 EME70675.1 - 1.9e-05 24.3 0.0 3e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family IF-2 PF11987.8 EME70676.1 - 3.5e-38 130.0 0.3 1.5e-37 127.9 0.3 2.2 1 0 0 1 1 1 1 Translation-initiation factor 2 GTP_EFTU PF00009.27 EME70676.1 - 1.7e-32 112.5 10.0 3.3e-32 111.6 4.5 2.8 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain IF2_N PF04760.15 EME70676.1 - 1.1e-15 57.1 0.0 3.5e-15 55.6 0.0 1.9 1 0 0 1 1 1 1 Translation initiation factor IF-2, N-terminal region IF2_assoc PF08364.11 EME70676.1 - 1.2e-13 51.1 5.9 3.3e-13 49.6 5.9 1.8 1 0 0 1 1 1 1 Bacterial translation initiation factor IF-2 associated region MMR_HSR1 PF01926.23 EME70676.1 - 1.4e-10 41.3 0.2 6.8e-10 39.0 0.2 2.3 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 EME70676.1 - 5.3e-08 33.1 0.7 5.3e-08 33.1 0.7 3.8 3 1 0 3 3 3 1 Elongation factor Tu domain 2 SRPRB PF09439.10 EME70676.1 - 2.1e-06 27.3 0.1 2.1e-06 27.3 0.1 3.0 3 1 0 3 3 3 1 Signal recognition particle receptor beta subunit FeoB_N PF02421.18 EME70676.1 - 1.1e-05 25.1 1.1 3e-05 23.6 1.1 1.8 1 1 0 1 1 1 1 Ferrous iron transport protein B Arf PF00025.21 EME70676.1 - 6.1e-05 22.6 0.0 0.00015 21.3 0.0 1.6 1 0 0 1 1 1 1 ADP-ribosylation factor family Ras PF00071.22 EME70676.1 - 0.00017 21.2 0.1 0.00048 19.8 0.1 1.7 1 0 0 1 1 1 1 Ras family PduV-EutP PF10662.9 EME70676.1 - 0.0011 18.7 0.2 0.0035 17.1 0.2 1.9 1 0 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation Roc PF08477.13 EME70676.1 - 0.005 17.0 0.2 0.019 15.2 0.0 2.1 2 0 0 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase Dynamin_N PF00350.23 EME70676.1 - 0.0074 16.4 1.9 1.6 8.8 0.0 3.3 2 1 1 3 3 3 2 Dynamin family MMR_HSR1_Xtn PF16897.5 EME70676.1 - 0.0091 16.0 0.3 0.036 14.1 0.1 2.2 2 0 0 2 2 2 1 C-terminal region of MMR_HSR1 domain RBFA PF02033.18 EME70677.1 - 2.1e-26 92.4 0.0 2.7e-26 92.1 0.0 1.1 1 0 0 1 1 1 1 Ribosome-binding factor A Iso_dh PF00180.20 EME70678.1 - 2.4e-132 441.3 0.0 2.7e-132 441.1 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Aconitase_C PF00694.19 EME70679.1 - 7.1e-40 136.4 0.0 9.4e-40 136.0 0.0 1.2 1 0 0 1 1 1 1 Aconitase C-terminal domain Lipase_GDSL_2 PF13472.6 EME70680.1 - 4.2e-10 40.3 0.1 0.00036 21.0 0.0 2.2 2 0 0 2 2 2 2 GDSL-like Lipase/Acylhydrolase family Lipase_GDSL PF00657.22 EME70680.1 - 0.00048 20.2 0.0 0.9 9.5 0.0 2.2 2 0 0 2 2 2 2 GDSL-like Lipase/Acylhydrolase Aconitase PF00330.20 EME70681.1 - 1.9e-162 541.5 0.4 2.1e-162 541.3 0.4 1.0 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) DUF521 PF04412.13 EME70681.1 - 0.0023 16.7 0.0 0.0046 15.7 0.0 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF521) Ribosomal_L19 PF01245.20 EME70682.1 - 2.5e-49 165.8 0.7 3.4e-49 165.4 0.7 1.2 1 0 0 1 1 1 1 Ribosomal protein L19 tRNA_m1G_MT PF01746.21 EME70683.1 - 2.4e-50 170.9 0.0 2.8e-50 170.7 0.0 1.0 1 0 0 1 1 1 1 tRNA (Guanine-1)-methyltransferase RimM PF01782.18 EME70684.1 - 4e-19 68.6 0.0 6.3e-19 68.0 0.0 1.3 1 0 0 1 1 1 1 RimM N-terminal domain PRC PF05239.16 EME70684.1 - 3.5e-10 39.8 1.0 3.5e-10 39.8 1.0 1.6 2 0 0 2 2 2 1 PRC-barrel domain Ribosomal_S16 PF00886.19 EME70685.1 - 2.9e-27 94.5 0.1 4.5e-27 93.9 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein S16 SRP54 PF00448.22 EME70686.1 - 1.7e-70 236.6 1.2 3.4e-70 235.7 1.2 1.5 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.19 EME70686.1 - 3.1e-34 117.5 3.2 1.1e-33 115.8 3.2 2.0 1 0 0 1 1 1 1 Signal peptide binding domain SRP54_N PF02881.19 EME70686.1 - 5.1e-22 77.9 0.5 1.6e-21 76.3 0.5 1.9 1 0 0 1 1 1 1 SRP54-type protein, helical bundle domain CbiA PF01656.23 EME70686.1 - 3.7e-08 33.5 0.7 1.5e-07 31.6 0.2 2.2 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain Zeta_toxin PF06414.12 EME70686.1 - 2.1e-06 27.2 0.1 5.6e-06 25.8 0.1 1.7 1 0 0 1 1 1 1 Zeta toxin AAA_31 PF13614.6 EME70686.1 - 3.4e-05 23.8 2.2 0.0005 20.0 0.4 2.9 2 1 0 3 3 3 1 AAA domain ArsA_ATPase PF02374.15 EME70686.1 - 0.00015 21.1 8.5 0.00022 20.5 0.5 3.3 2 2 1 4 4 4 1 Anion-transporting ATPase AAA_33 PF13671.6 EME70686.1 - 0.00063 19.9 2.4 0.0016 18.7 0.2 2.4 2 1 0 2 2 2 1 AAA domain ParA PF10609.9 EME70686.1 - 0.0012 18.3 0.5 0.0031 17.0 0.2 1.8 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase APS_kinase PF01583.20 EME70686.1 - 0.0035 17.3 0.2 0.021 14.7 0.0 2.2 2 0 0 2 2 2 1 Adenylylsulphate kinase 6PF2K PF01591.18 EME70686.1 - 0.018 14.3 0.1 0.037 13.3 0.1 1.4 1 0 0 1 1 1 0 6-phosphofructo-2-kinase NACHT PF05729.12 EME70686.1 - 0.024 14.5 0.1 0.06 13.3 0.1 1.7 1 0 0 1 1 1 0 NACHT domain ResIII PF04851.15 EME70686.1 - 0.036 14.1 0.2 0.1 12.6 0.0 1.8 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_7 PF12775.7 EME70686.1 - 0.038 13.5 0.0 0.069 12.7 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_24 PF13479.6 EME70686.1 - 0.044 13.5 0.1 0.17 11.6 0.1 2.0 1 1 0 1 1 1 0 AAA domain KTI12 PF08433.10 EME70686.1 - 0.079 12.4 0.1 0.079 12.4 0.1 2.2 3 0 0 3 3 3 0 Chromatin associated protein KTI12 ABC_tran PF00005.27 EME70686.1 - 0.1 13.1 0.5 0.4 11.2 0.0 2.1 2 1 0 2 2 2 0 ABC transporter AAA_22 PF13401.6 EME70686.1 - 0.12 12.6 0.2 0.3 11.3 0.2 1.7 1 1 0 1 1 1 0 AAA domain Thymidylate_kin PF02223.17 EME70686.1 - 1.4 8.5 4.6 0.26 10.9 0.4 1.8 2 0 0 2 2 2 0 Thymidylate kinase DUF2508 PF10704.9 EME70686.1 - 3.1 8.0 5.5 44 4.3 0.1 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF2508) MMR_HSR1 PF01926.23 EME70686.1 - 5.6 7.1 5.5 5.8 7.0 0.5 3.4 2 2 0 3 3 3 0 50S ribosome-binding GTPase DEAD PF00270.29 EME70687.1 - 2.5e-42 144.6 0.0 4.8e-42 143.7 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 EME70687.1 - 2.9e-25 88.8 0.0 1.3e-24 86.7 0.0 2.0 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DbpA PF03880.15 EME70687.1 - 6.5e-17 61.3 0.1 1.2e-16 60.4 0.1 1.5 1 0 0 1 1 1 1 DbpA RNA binding domain ResIII PF04851.15 EME70687.1 - 0.00029 20.9 0.0 0.00046 20.2 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit CMS1 PF14617.6 EME70687.1 - 0.01 15.2 0.0 0.018 14.4 0.0 1.3 1 0 0 1 1 1 0 U3-containing 90S pre-ribosomal complex subunit AAA_22 PF13401.6 EME70687.1 - 0.24 11.7 1.1 4.4 7.6 1.1 2.5 1 1 0 1 1 1 0 AAA domain Guanylate_cyc PF00211.20 EME70688.1 - 1.7e-20 73.4 0.0 3.4e-20 72.5 0.0 1.5 1 0 0 1 1 1 1 Adenylate and Guanylate cyclase catalytic domain CHASE8 PF17152.4 EME70688.1 - 0.0083 16.4 0.0 0.033 14.4 0.0 2.0 2 0 0 2 2 2 1 Periplasmic sensor domain OEP PF02321.18 EME70689.1 - 6.4e-22 78.3 9.6 8.8e-11 42.0 0.4 2.1 2 0 0 2 2 2 2 Outer membrane efflux protein ABC_tran PF00005.27 EME70690.1 - 2e-28 99.6 0.0 5.1e-28 98.3 0.0 1.7 2 0 0 2 2 2 1 ABC transporter ABC_membrane PF00664.23 EME70690.1 - 5.5e-17 62.3 0.4 7.6e-17 61.9 0.4 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region SMC_N PF02463.19 EME70690.1 - 3.1e-07 30.1 0.0 2.4e-05 23.9 0.0 2.0 1 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 EME70690.1 - 0.00056 19.8 0.0 0.97 9.2 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_33 PF13671.6 EME70690.1 - 0.021 15.0 0.2 0.23 11.6 0.2 2.3 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 EME70690.1 - 0.043 13.6 0.1 0.092 12.5 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Mg_chelatase PF01078.21 EME70690.1 - 0.08 12.3 0.0 0.19 11.1 0.0 1.6 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI MobB PF03205.14 EME70690.1 - 0.084 12.8 0.1 8 6.4 0.0 2.4 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B HlyD_3 PF13437.6 EME70691.1 - 1.8e-17 64.0 0.6 4.3e-14 53.1 0.0 3.2 3 0 0 3 3 3 2 HlyD family secretion protein HlyD_D23 PF16576.5 EME70691.1 - 8.6e-11 41.5 4.5 3.9e-09 36.1 0.0 2.6 1 1 1 2 2 2 2 Barrel-sandwich domain of CusB or HlyD membrane-fusion HlyD PF00529.20 EME70691.1 - 3.8e-10 39.5 0.0 4.9e-10 39.2 0.0 1.3 1 1 0 1 1 1 1 HlyD membrane-fusion protein of T1SS Biotin_lipoyl_2 PF13533.6 EME70691.1 - 3.9e-05 23.4 0.5 0.0035 17.1 0.1 2.8 2 0 0 2 2 2 1 Biotin-lipoyl like Biotin_lipoyl PF00364.22 EME70691.1 - 0.0019 18.0 2.3 0.1 12.5 0.1 3.2 2 1 0 2 2 2 1 Biotin-requiring enzyme Csm1_N PF18504.1 EME70691.1 - 0.031 14.6 0.4 0.031 14.6 0.4 3.1 3 0 0 3 3 3 0 Csm1 N-terminal domain Spc7 PF08317.11 EME70691.1 - 0.51 9.2 7.4 0.76 8.6 7.4 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein ABC_tran_CTD PF16326.5 EME70691.1 - 0.7 10.2 8.7 2.5 8.4 3.0 2.9 2 1 1 3 3 3 0 ABC transporter C-terminal domain TMF_DNA_bd PF12329.8 EME70691.1 - 0.94 9.5 4.4 0.31 11.1 1.5 1.7 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding DUF724 PF05266.14 EME70691.1 - 1.8 8.3 6.0 0.84 9.4 2.8 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF724) FlaC_arch PF05377.11 EME70691.1 - 8.5 6.9 6.0 35 4.9 0.7 2.7 3 0 0 3 3 3 0 Flagella accessory protein C (FlaC) HemolysinCabind PF00353.19 EME70692.1 - 3.3e-23 81.3 215.7 2.2e-06 27.5 10.8 19.1 16 6 7 23 23 23 12 RTX calcium-binding nonapeptide repeat (4 copies) Cadherin_5 PF17892.1 EME70692.1 - 1e-14 54.2 2.7 1e-14 54.2 2.7 4.9 5 0 0 5 5 5 1 Cadherin-like domain Big_9 PF17963.1 EME70692.1 - 6.4e-10 39.6 7.2 6.4e-10 39.6 7.2 13.4 10 4 0 11 11 11 1 Bacterial Ig domain Phage_integrase PF00589.22 EME70693.1 - 4.3e-25 88.5 0.8 1.1e-24 87.2 0.1 2.0 2 0 0 2 2 2 1 Phage integrase family DUF3387 PF11867.8 EME70694.1 - 1.3e-26 93.8 0.3 1.4e-26 93.7 0.3 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF3387) Ank_5 PF13857.6 EME70695.1 - 4e-07 30.2 0.0 1.3e-06 28.6 0.0 1.9 1 0 0 1 1 1 1 Ankyrin repeats (many copies) Ank_2 PF12796.7 EME70695.1 - 0.00013 22.5 0.0 0.00029 21.4 0.0 1.6 1 0 0 1 1 1 1 Ankyrin repeats (3 copies) Ank_3 PF13606.6 EME70695.1 - 0.0047 17.3 0.0 0.026 15.0 0.0 2.3 2 0 0 2 2 2 1 Ankyrin repeat Ank_4 PF13637.6 EME70695.1 - 0.04 14.5 0.0 0.1 13.2 0.0 1.8 1 0 0 1 1 1 0 Ankyrin repeats (many copies) Ank PF00023.30 EME70695.1 - 0.058 13.9 0.3 0.4 11.2 0.1 2.5 2 0 0 2 2 2 0 Ankyrin repeat FliT PF05400.13 EME70695.1 - 0.065 14.1 0.1 0.16 12.8 0.0 1.8 1 1 0 1 1 1 0 Flagellar protein FliT MitoNEET_N PF10660.9 EME70696.1 - 0.093 12.8 0.0 0.2 11.7 0.0 1.5 1 0 0 1 1 1 0 Iron-containing outer mitochondrial membrane protein N-terminus Phage_integrase PF00589.22 EME70697.1 - 9.8e-24 84.1 1.0 6.7e-23 81.3 0.1 2.6 2 2 1 3 3 3 1 Phage integrase family HemolysinCabind PF00353.19 EME70698.1 - 6.3e-22 77.2 66.1 1.6e-09 37.5 15.9 4.7 3 1 1 4 4 4 4 RTX calcium-binding nonapeptide repeat (4 copies) Peptidase_M10_C PF08548.11 EME70698.1 - 0.021 14.7 14.7 0.015 15.2 5.5 3.0 1 1 2 3 3 3 0 Peptidase M10 serralysin C terminal ABC_tran PF00005.27 EME70699.1 - 3.1e-49 167.0 0.0 6.5e-24 85.0 0.0 2.5 2 0 0 2 2 2 2 ABC transporter ABC_membrane PF00664.23 EME70699.1 - 4.6e-43 147.8 23.2 5.9e-27 95.0 6.5 2.1 2 0 0 2 2 2 2 ABC transporter transmembrane region AAA_16 PF13191.6 EME70699.1 - 8e-09 36.1 2.8 0.0027 18.1 0.0 3.7 3 0 0 3 3 3 2 AAA ATPase domain SMC_N PF02463.19 EME70699.1 - 3.8e-08 33.0 0.0 0.12 11.8 0.0 4.0 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 EME70699.1 - 1.2e-07 31.8 0.4 0.13 12.0 0.0 3.4 3 0 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 EME70699.1 - 3.9e-06 27.2 0.0 0.03 14.6 0.0 3.1 2 1 0 2 2 2 2 AAA domain AAA_29 PF13555.6 EME70699.1 - 4.1e-06 26.4 1.3 0.096 12.4 0.4 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 EME70699.1 - 0.00016 21.6 2.4 0.3 11.0 0.0 3.2 3 0 0 3 3 3 2 RsgA GTPase Zeta_toxin PF06414.12 EME70699.1 - 0.00049 19.4 0.6 0.013 14.8 0.0 2.4 2 0 0 2 2 2 1 Zeta toxin AAA PF00004.29 EME70699.1 - 0.00062 20.2 0.0 2.4 8.6 0.0 3.3 3 0 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.6 EME70699.1 - 0.0041 17.6 0.5 2 8.9 0.0 2.3 2 0 0 2 2 2 1 AAA domain MMR_HSR1 PF01926.23 EME70699.1 - 0.0058 16.7 0.0 1.7 8.8 0.0 2.6 2 0 0 2 2 2 1 50S ribosome-binding GTPase AAA_18 PF13238.6 EME70699.1 - 0.01 16.3 1.0 2 9.0 0.0 2.6 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 EME70699.1 - 0.011 15.9 0.0 0.73 10.0 0.0 3.2 2 1 0 2 2 2 0 AAA domain AAA_24 PF13479.6 EME70699.1 - 0.011 15.4 0.1 5.5 6.7 0.0 2.3 2 0 0 2 2 2 0 AAA domain PRK PF00485.18 EME70699.1 - 0.014 15.2 0.1 2 8.1 0.3 2.5 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family AAA_30 PF13604.6 EME70699.1 - 0.016 15.0 7.0 0.039 13.7 0.0 2.9 3 1 0 3 3 2 0 AAA domain AAA_25 PF13481.6 EME70699.1 - 0.05 13.2 0.2 4.4 6.8 0.0 2.9 2 0 0 2 2 2 0 AAA domain DUF87 PF01935.17 EME70699.1 - 0.065 13.3 0.8 1.7 8.7 0.0 2.4 2 0 0 2 2 2 0 Helicase HerA, central domain NACHT PF05729.12 EME70699.1 - 0.076 12.9 2.6 3.1 7.7 0.0 3.1 3 0 0 3 3 3 0 NACHT domain cobW PF02492.19 EME70699.1 - 0.082 12.5 0.2 0.66 9.5 0.0 2.2 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain KAP_NTPase PF07693.14 EME70699.1 - 0.11 11.7 0.0 8.9 5.4 0.0 2.4 2 0 0 2 2 2 0 KAP family P-loop domain AAA_28 PF13521.6 EME70699.1 - 0.21 11.8 0.6 5.1 7.3 0.0 2.6 2 0 0 2 2 2 0 AAA domain Dynamin_N PF00350.23 EME70699.1 - 0.43 10.6 1.0 4.7 7.2 0.0 2.4 2 0 0 2 2 2 0 Dynamin family HlyD_3 PF13437.6 EME70700.1 - 1e-16 61.6 2.6 1.7e-13 51.1 0.3 2.5 2 0 0 2 2 2 2 HlyD family secretion protein HlyD_D23 PF16576.5 EME70700.1 - 3.7e-11 42.7 1.0 4.1e-08 32.7 0.2 2.2 2 0 0 2 2 2 2 Barrel-sandwich domain of CusB or HlyD membrane-fusion Biotin_lipoyl_2 PF13533.6 EME70700.1 - 2e-07 30.7 0.2 2e-07 30.7 0.2 2.5 3 0 0 3 3 3 1 Biotin-lipoyl like HlyD PF00529.20 EME70700.1 - 3.1e-05 23.8 0.0 4.6e-05 23.2 0.0 1.4 1 1 0 1 1 1 1 HlyD membrane-fusion protein of T1SS Biotin_lipoyl PF00364.22 EME70700.1 - 0.018 14.8 1.8 0.2 11.5 0.0 2.8 3 0 0 3 3 3 0 Biotin-requiring enzyme Ly49 PF08391.10 EME70700.1 - 0.072 13.4 0.1 0.13 12.6 0.1 1.3 1 0 0 1 1 1 0 Ly49-like protein, N-terminal region AAA_9 PF12781.7 EME70700.1 - 0.44 9.7 1.6 0.75 8.9 1.6 1.3 1 0 0 1 1 1 0 ATP-binding dynein motor region ApoO PF09769.9 EME70700.1 - 1.1 9.2 4.0 5.6 6.9 0.2 2.8 3 0 0 3 3 3 0 Apolipoprotein O RPA_interact_N PF14766.6 EME70700.1 - 7.4 6.3 6.2 0.72 9.5 0.9 2.1 3 0 0 3 3 3 0 Replication protein A interacting N-terminal HisKA_3 PF07730.13 EME70701.1 - 2.7e-11 43.8 0.2 2.7e-11 43.8 0.2 2.8 4 0 0 4 4 4 1 Histidine kinase HATPase_c PF02518.26 EME70701.1 - 4.1e-08 33.7 0.3 3.2e-07 30.8 0.3 2.4 2 1 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 EME70701.1 - 9.2e-07 29.1 0.0 1.7e-06 28.2 0.0 1.5 1 0 0 1 1 1 1 PAS domain HATPase_c_2 PF13581.6 EME70701.1 - 0.087 12.8 1.0 0.47 10.4 0.1 2.6 2 1 0 2 2 2 0 Histidine kinase-like ATPase domain Response_reg PF00072.24 EME70702.1 - 6.4e-23 81.1 0.0 8.6e-23 80.7 0.0 1.2 1 0 0 1 1 1 1 Response regulator receiver domain GerE PF00196.19 EME70702.1 - 1.3e-16 59.9 0.1 2.4e-16 59.0 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 EME70702.1 - 4.3e-06 26.3 0.1 7.2e-06 25.6 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 EME70702.1 - 0.0029 17.1 1.2 0.004 16.6 0.2 1.8 2 0 0 2 2 2 1 Sigma-70, region 4 TadZ_N PF16968.5 EME70702.1 - 0.0098 15.6 0.1 0.015 15.0 0.1 1.3 1 0 0 1 1 1 1 Pilus assembly protein TadZ N-terminal DUF742 PF05331.11 EME70702.1 - 0.02 14.7 0.1 0.047 13.5 0.1 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF742) HTH_28 PF13518.6 EME70702.1 - 0.021 14.9 0.0 0.052 13.7 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.6 EME70702.1 - 0.11 12.3 0.1 0.24 11.2 0.1 1.5 1 0 0 1 1 1 0 Homeodomain-like domain Coatamer_beta_C PF07718.12 EME70702.1 - 0.14 12.1 0.0 0.21 11.5 0.0 1.3 1 0 0 1 1 1 0 Coatomer beta C-terminal region HTH_5 PF01022.20 EME70702.1 - 0.14 12.1 0.0 0.26 11.2 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Radical_SAM PF04055.21 EME70703.1 - 3.3e-17 63.4 0.0 5.5e-17 62.6 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily DUF4070 PF13282.6 EME70703.1 - 1.8e-08 34.6 0.0 3.2e-08 33.8 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4070) DUF2623 PF11115.8 EME70703.1 - 0.13 12.3 0.0 0.84 9.8 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2623) DUF4136 PF13590.6 EME70706.1 - 0.052 14.1 0.0 0.052 14.1 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4136) HATPase_c PF02518.26 EME70708.1 - 7e-25 87.7 0.0 1.2e-24 87.0 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 EME70708.1 - 4.5e-08 33.0 0.5 1e-07 31.9 0.0 1.9 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.6 EME70708.1 - 0.00089 19.1 0.0 0.0016 18.3 0.0 1.3 1 0 0 1 1 1 1 GHKL domain DUF4398 PF14346.6 EME70708.1 - 0.0083 16.7 3.1 0.0083 16.7 3.1 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4398) HATPase_c_3 PF13589.6 EME70708.1 - 0.0085 15.9 0.0 0.015 15.1 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 EME70708.1 - 0.013 15.7 0.0 0.032 14.5 0.0 1.7 1 0 0 1 1 1 0 PAS domain PAS PF00989.25 EME70708.1 - 0.052 13.6 0.0 0.15 12.0 0.0 1.8 1 0 0 1 1 1 0 PAS fold HATPase_c_2 PF13581.6 EME70708.1 - 0.099 12.6 0.0 0.099 12.6 0.0 2.1 3 0 0 3 3 3 0 Histidine kinase-like ATPase domain CheR PF01739.18 EME70709.1 - 5.3e-53 179.4 0.0 8.4e-53 178.8 0.0 1.3 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain CheB_methylest PF01339.17 EME70709.1 - 6.5e-52 175.7 0.0 1.1e-51 174.9 0.0 1.4 1 0 0 1 1 1 1 CheB methylesterase PAS_10 PF13596.6 EME70709.1 - 2.4e-27 95.6 0.1 9.3e-27 93.7 0.1 2.1 2 0 0 2 2 1 1 PAS domain CheR_N PF03705.15 EME70709.1 - 3.8e-13 48.9 0.1 7.7e-13 48.0 0.1 1.5 1 0 0 1 1 1 1 CheR methyltransferase, all-alpha domain PAS_4 PF08448.10 EME70709.1 - 6.6e-09 36.0 1.4 0.0014 18.8 0.0 3.7 3 0 0 3 3 3 2 PAS fold PAS PF00989.25 EME70709.1 - 8.5e-05 22.5 0.0 0.096 12.7 0.0 3.5 3 0 0 3 3 3 1 PAS fold AIP3 PF03915.13 EME70709.1 - 0.00023 20.4 0.4 0.00036 19.7 0.4 1.2 1 0 0 1 1 1 1 Actin interacting protein 3 CENP-F_leu_zip PF10473.9 EME70709.1 - 0.00047 20.2 15.9 0.00095 19.2 15.9 1.4 1 0 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 ATG16 PF08614.11 EME70709.1 - 0.0029 17.8 15.3 0.0052 17.0 15.3 1.3 1 0 0 1 1 1 1 Autophagy protein 16 (ATG16) Leu_zip PF15294.6 EME70709.1 - 0.0057 16.2 8.7 0.0094 15.5 8.7 1.3 1 0 0 1 1 1 1 Leucine zipper Laminin_II PF06009.12 EME70709.1 - 0.0058 16.7 6.2 0.014 15.5 6.2 1.6 1 0 0 1 1 1 1 Laminin Domain II Golgin_A5 PF09787.9 EME70709.1 - 0.014 14.9 14.9 0.024 14.1 14.9 1.3 1 0 0 1 1 1 0 Golgin subfamily A member 5 Rootletin PF15035.6 EME70709.1 - 0.016 15.2 9.6 0.029 14.4 9.6 1.3 1 0 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion Spc7 PF08317.11 EME70709.1 - 0.02 13.8 14.5 0.032 13.1 14.5 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein Atg14 PF10186.9 EME70709.1 - 0.032 13.3 7.1 0.049 12.7 7.1 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 PAS_9 PF13426.7 EME70709.1 - 0.038 14.2 0.0 0.75 10.1 0.0 3.0 3 0 0 3 3 2 0 PAS domain DUF4795 PF16043.5 EME70709.1 - 0.039 13.5 6.2 0.08 12.5 6.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4795) UPF0242 PF06785.11 EME70709.1 - 0.05 13.7 9.1 0.082 13.0 9.1 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus HMMR_N PF15905.5 EME70709.1 - 0.055 12.9 14.0 0.09 12.2 14.0 1.2 1 0 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal DUF3552 PF12072.8 EME70709.1 - 0.056 12.9 16.8 0.11 11.9 16.8 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) HOOK PF05622.12 EME70709.1 - 0.08 11.1 12.7 0.13 10.4 12.7 1.2 1 0 0 1 1 1 0 HOOK protein GAS PF13851.6 EME70709.1 - 0.092 12.1 13.3 0.21 10.9 13.3 1.5 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding Med30 PF11315.8 EME70709.1 - 0.1 12.8 6.7 0.19 11.9 5.5 2.0 2 0 0 2 2 1 0 Mediator complex subunit 30 Snapin_Pallidin PF14712.6 EME70709.1 - 0.12 12.8 10.5 0.36 11.3 10.5 1.9 1 0 0 1 1 1 0 Snapin/Pallidin V_ATPase_I PF01496.19 EME70709.1 - 0.14 10.1 6.5 0.19 9.6 6.5 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family IFT57 PF10498.9 EME70709.1 - 0.14 11.1 10.4 0.21 10.5 10.4 1.2 1 0 0 1 1 1 0 Intra-flagellar transport protein 57 Exonuc_VII_L PF02601.15 EME70709.1 - 0.14 11.7 4.9 0.23 11.0 4.9 1.3 1 0 0 1 1 1 0 Exonuclease VII, large subunit Baculo_gp64 PF03273.13 EME70709.1 - 0.19 10.5 1.1 0.45 9.2 0.9 1.5 1 1 0 1 1 1 0 Baculovirus gp64 envelope glycoprotein family AAA_13 PF13166.6 EME70709.1 - 0.33 9.6 7.1 0.46 9.1 7.1 1.1 1 0 0 1 1 1 0 AAA domain DUF3584 PF12128.8 EME70709.1 - 0.33 8.4 12.5 0.47 7.9 12.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) FapA PF03961.13 EME70709.1 - 0.35 9.4 6.1 0.53 8.8 6.1 1.1 1 0 0 1 1 1 0 Flagellar Assembly Protein A HSD3 PF15244.6 EME70709.1 - 0.36 10.3 6.6 0.57 9.6 6.6 1.1 1 0 0 1 1 1 0 Spermatogenesis-associated protein 7, or HSD3 HIP1_clath_bdg PF16515.5 EME70709.1 - 0.5 11.0 15.0 1.4 9.5 15.0 1.8 1 0 0 1 1 1 0 Clathrin-binding domain of Huntingtin-interacting protein 1 LMBR1 PF04791.16 EME70709.1 - 0.73 8.7 1.5 1 8.2 1.5 1.1 1 0 0 1 1 1 0 LMBR1-like membrane protein DUF3618 PF12277.8 EME70709.1 - 0.95 9.8 4.6 3.9 7.8 3.5 2.7 2 0 0 2 2 1 0 Protein of unknown function (DUF3618) Seryl_tRNA_N PF02403.22 EME70709.1 - 1 9.6 11.4 2.6 8.3 11.4 1.6 1 0 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain Fmp27_WPPW PF10359.9 EME70709.1 - 1.1 8.0 8.5 1.6 7.5 8.5 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain KxDL PF10241.9 EME70709.1 - 1.3 9.4 12.8 0.78 10.1 2.2 2.6 1 1 1 2 2 2 0 Uncharacterized conserved protein LXG PF04740.12 EME70709.1 - 1.3 8.7 11.5 2.5 7.8 11.5 1.3 1 0 0 1 1 1 0 LXG domain of WXG superfamily TMPIT PF07851.13 EME70709.1 - 1.7 7.8 7.7 2.6 7.2 7.7 1.1 1 0 0 1 1 1 0 TMPIT-like protein DUF3450 PF11932.8 EME70709.1 - 1.8 7.8 16.3 0.95 8.7 13.9 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) ZapB PF06005.12 EME70709.1 - 2 8.9 22.2 5.9e+02 1.0 22.2 2.5 1 1 0 1 1 1 0 Cell division protein ZapB Prominin PF05478.11 EME70709.1 - 2 6.3 5.8 2.9 5.7 5.8 1.1 1 0 0 1 1 1 0 Prominin DUF745 PF05335.13 EME70709.1 - 2.1 8.0 13.1 4.5 7.0 13.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF745) DUF1664 PF07889.12 EME70709.1 - 2.3 8.2 8.9 5.6 7.0 8.2 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) OmpH PF03938.14 EME70709.1 - 2.4 8.5 12.6 5.2 7.4 12.6 1.5 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) Sec20 PF03908.13 EME70709.1 - 2.5 8.1 5.9 6.2 6.8 5.9 1.7 1 0 0 1 1 1 0 Sec20 ADIP PF11559.8 EME70709.1 - 3.4 7.8 16.6 6.1 6.9 16.6 1.3 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding DUF2203 PF09969.9 EME70709.1 - 4.9 7.9 6.3 11 6.7 6.3 1.6 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) DUF4407 PF14362.6 EME70709.1 - 5.3 6.3 7.4 8.9 5.6 7.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) PilO PF04350.13 EME70709.1 - 5.5 7.1 9.0 1.2 9.2 4.6 2.1 1 1 1 2 2 2 0 Pilus assembly protein, PilO UPF0449 PF15136.6 EME70709.1 - 7.1 7.2 13.9 40 4.7 13.9 2.2 1 1 0 1 1 1 0 Uncharacterised protein family UPF0449 APG6_N PF17675.1 EME70709.1 - 7.9 7.0 18.9 17 6.0 18.9 1.4 1 0 0 1 1 1 0 Apg6 coiled-coil region E1-E2_ATPase PF00122.20 EME70710.1 - 2e-45 154.6 1.8 2e-45 154.6 1.8 3.0 4 0 0 4 4 4 1 E1-E2 ATPase Cation_ATPase_C PF00689.21 EME70710.1 - 2.2e-42 144.8 0.1 5.3e-42 143.6 0.1 1.7 1 0 0 1 1 1 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.26 EME70710.1 - 6.5e-24 85.4 4.7 1.7e-23 84.0 4.7 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.26 EME70710.1 - 1.9e-15 56.3 0.0 3.5e-15 55.4 0.0 1.5 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Cation_ATPase PF13246.6 EME70710.1 - 2.7e-08 33.8 0.0 1.5e-07 31.4 0.0 2.2 1 1 0 1 1 1 1 Cation transport ATPase (P-type) Hydrolase_3 PF08282.12 EME70710.1 - 8.2e-08 32.3 0.7 4e-05 23.5 0.9 2.2 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 EME70710.1 - 0.00022 21.7 0.1 0.00078 19.9 0.1 2.0 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Lyase_1 PF00206.20 EME70711.1 - 4.5e-105 351.5 0.0 5.6e-105 351.2 0.0 1.1 1 0 0 1 1 1 1 Lyase FumaraseC_C PF10415.9 EME70711.1 - 5.7e-24 84.3 0.1 1.5e-23 83.0 0.1 1.8 1 0 0 1 1 1 1 Fumarase C C-terminus ADH_N PF08240.12 EME70711.1 - 0.08 12.8 0.0 1 9.3 0.0 2.3 1 1 0 1 1 1 0 Alcohol dehydrogenase GroES-like domain Lactamase_B PF00753.27 EME70712.1 - 3e-31 109.0 0.4 4.5e-31 108.4 0.4 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily HTH_5 PF01022.20 EME70713.1 - 3.2e-13 49.3 1.0 5.2e-13 48.6 1.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 EME70713.1 - 6.3e-11 42.2 1.4 1.1e-10 41.4 1.4 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 EME70713.1 - 9.1e-07 28.7 0.9 2.8e-06 27.1 0.7 1.9 2 1 0 2 2 2 1 MarR family HxlR PF01638.17 EME70713.1 - 4.6e-06 26.4 0.1 6.8e-06 25.9 0.1 1.3 1 1 0 1 1 1 1 HxlR-like helix-turn-helix PaaX PF07848.12 EME70713.1 - 0.007 16.6 0.1 1.1 9.5 0.1 2.2 2 0 0 2 2 2 1 PaaX-like protein Rrf2 PF02082.20 EME70713.1 - 0.011 16.0 0.2 0.016 15.5 0.2 1.3 1 0 0 1 1 1 0 Transcriptional regulator HTH_24 PF13412.6 EME70713.1 - 0.019 14.5 0.3 0.037 13.6 0.3 1.6 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR PF01047.22 EME70713.1 - 0.033 14.1 0.2 0.055 13.4 0.2 1.4 1 0 0 1 1 1 0 MarR family HTH_1 PF00126.27 EME70713.1 - 0.045 13.7 1.1 0.058 13.3 0.1 1.7 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family DUF1995 PF09353.10 EME70713.1 - 0.053 13.5 0.0 0.062 13.3 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF1995) HTH_28 PF13518.6 EME70713.1 - 0.067 13.3 0.2 0.11 12.6 0.2 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_Crp_2 PF13545.6 EME70713.1 - 0.071 13.1 1.3 0.11 12.4 1.3 1.5 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain TFA2_Winged_2 PF18121.1 EME70713.1 - 0.13 11.9 0.0 0.2 11.4 0.0 1.5 1 1 0 1 1 1 0 TFA2 Winged helix domain 2 TIP49 PF06068.13 EME70713.1 - 0.21 10.8 0.1 0.27 10.4 0.1 1.1 1 0 0 1 1 1 0 TIP49 P-loop domain polyprenyl_synt PF00348.17 EME70714.1 - 1.6e-53 181.4 0.3 1.9e-53 181.2 0.3 1.0 1 0 0 1 1 1 1 Polyprenyl synthetase DUF555 PF04475.12 EME70714.1 - 0.036 14.4 0.4 45 4.4 0.0 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF555) Exonuc_VII_S PF02609.16 EME70715.1 - 4.6e-17 61.8 2.6 5.7e-17 61.5 2.6 1.1 1 0 0 1 1 1 1 Exonuclease VII small subunit Vps53_N PF04100.12 EME70715.1 - 0.054 12.5 0.0 0.061 12.3 0.0 1.0 1 0 0 1 1 1 0 Vps53-like, N-terminal TPR_1 PF00515.28 EME70716.1 - 2.4e-10 39.8 5.6 0.0023 17.7 0.6 3.9 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_16 PF13432.6 EME70716.1 - 1.2e-09 38.7 16.2 3.2e-08 34.1 5.1 3.7 2 1 1 4 4 4 3 Tetratricopeptide repeat TPR_2 PF07719.17 EME70716.1 - 1.6e-09 37.2 11.9 0.00054 19.9 0.1 4.4 5 0 0 5 5 3 3 Tetratricopeptide repeat TPR_19 PF14559.6 EME70716.1 - 6.4e-08 33.0 4.5 1.9e-06 28.3 3.5 2.5 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_8 PF13181.6 EME70716.1 - 9.8e-08 31.6 3.6 0.0029 17.7 0.1 3.6 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_12 PF13424.6 EME70716.1 - 4.6e-06 26.8 9.8 0.099 13.0 0.5 3.8 1 1 2 3 3 3 2 Tetratricopeptide repeat TPR_14 PF13428.6 EME70716.1 - 2e-05 25.0 19.6 0.0081 16.9 0.5 5.1 4 1 2 6 6 4 2 Tetratricopeptide repeat Methyltransf_25 PF13649.6 EME70716.1 - 2.7e-05 24.8 0.1 8e-05 23.3 0.1 1.9 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 EME70716.1 - 7.6e-05 22.3 0.0 0.00015 21.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase small domain Coatomer_E PF04733.14 EME70716.1 - 0.00011 21.8 0.0 0.0016 18.0 0.0 2.1 1 1 1 2 2 2 1 Coatomer epsilon subunit Methyltransf_31 PF13847.6 EME70716.1 - 0.00047 20.0 0.0 0.00084 19.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Wzy_C_2 PF11846.8 EME70716.1 - 0.00047 20.1 0.8 0.013 15.5 0.6 2.2 1 1 1 2 2 2 2 Virulence factor membrane-bound polymerase, C-terminal TPR_17 PF13431.6 EME70716.1 - 0.0005 20.3 0.6 0.5 10.9 0.5 3.2 3 0 0 3 3 2 1 Tetratricopeptide repeat TPR_9 PF13371.6 EME70716.1 - 0.0006 19.9 5.4 0.33 11.1 0.1 3.8 3 0 0 3 3 3 1 Tetratricopeptide repeat Methyltransf_23 PF13489.6 EME70716.1 - 0.00082 19.2 0.0 0.014 15.2 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain ANAPC3 PF12895.7 EME70716.1 - 0.0012 19.0 0.5 0.0033 17.6 0.1 1.9 2 0 0 2 2 2 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_6 PF13174.6 EME70716.1 - 0.0012 19.4 6.7 0.69 10.7 0.1 3.8 4 0 0 4 4 3 2 Tetratricopeptide repeat TPR_4 PF07721.14 EME70716.1 - 0.0028 18.1 10.6 0.11 13.2 0.0 4.3 4 0 0 4 4 3 2 Tetratricopeptide repeat TPR_7 PF13176.6 EME70716.1 - 0.0039 17.1 3.6 0.27 11.4 0.1 3.8 4 0 0 4 4 4 1 Tetratricopeptide repeat Met_10 PF02475.16 EME70716.1 - 0.015 15.1 0.0 0.024 14.4 0.0 1.3 1 0 0 1 1 1 0 Met-10+ like-protein TPR_11 PF13414.6 EME70716.1 - 0.017 14.8 6.5 0.55 10.0 0.4 3.6 3 1 1 4 4 4 0 TPR repeat Methyltransf_4 PF02390.17 EME70716.1 - 0.026 14.0 0.0 0.042 13.3 0.0 1.3 1 0 0 1 1 1 0 Putative methyltransferase PrmA PF06325.13 EME70716.1 - 0.046 13.1 0.0 0.071 12.5 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) RPN7 PF10602.9 EME70716.1 - 0.12 12.1 0.2 7.4 6.2 0.0 2.3 2 0 0 2 2 2 0 26S proteasome subunit RPN7 Methyltransf_21 PF05050.12 EME70716.1 - 0.2 11.7 0.0 0.34 10.9 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase FkbM domain Hist_deacetyl PF00850.19 EME70717.1 - 1.1e-86 291.1 0.2 1.3e-86 290.8 0.2 1.1 1 0 0 1 1 1 1 Histone deacetylase domain FtsJ PF01728.19 EME70718.1 - 1.1e-23 84.2 0.0 1.3e-23 84.0 0.0 1.1 1 0 0 1 1 1 1 FtsJ-like methyltransferase S4 PF01479.25 EME70718.1 - 9.2e-05 22.1 0.0 0.00021 20.9 0.0 1.7 1 0 0 1 1 1 1 S4 domain Methyltransf_11 PF08241.12 EME70718.1 - 0.0013 19.3 0.0 0.002 18.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 EME70718.1 - 0.0033 18.1 0.0 0.0053 17.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 EME70718.1 - 0.086 13.6 0.0 0.13 13.0 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain BRK PF07533.16 EME70718.1 - 0.11 12.2 0.1 8.2 6.2 0.0 2.4 2 0 0 2 2 2 0 BRK domain SRAP PF02586.14 EME70719.1 - 6.3e-26 91.3 0.0 9.1e-26 90.8 0.0 1.2 1 0 0 1 1 1 1 SOS response associated peptidase (SRAP) Trans_reg_C PF00486.28 EME70721.1 - 2.9e-29 101.0 0.1 4.9e-29 100.2 0.1 1.4 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal Response_reg PF00072.24 EME70721.1 - 7e-23 80.9 0.0 1.3e-22 80.1 0.0 1.4 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.26 EME70722.1 - 1.2e-18 67.6 0.0 2.5e-18 66.6 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HAMP PF00672.25 EME70722.1 - 3.2e-08 33.8 0.4 3.2e-08 33.8 0.4 2.6 3 0 0 3 3 3 1 HAMP domain HisKA PF00512.25 EME70722.1 - 8.3e-05 22.6 2.4 0.00019 21.4 0.6 2.4 1 1 1 2 2 2 1 His Kinase A (phospho-acceptor) domain Prominin PF05478.11 EME70722.1 - 0.0021 16.1 0.0 0.003 15.6 0.0 1.1 1 0 0 1 1 1 1 Prominin HATPase_c_2 PF13581.6 EME70722.1 - 0.0052 16.7 0.0 0.011 15.7 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain DUF948 PF06103.11 EME70722.1 - 0.024 14.9 0.0 0.75 10.1 0.0 2.9 3 0 0 3 3 3 0 Bacterial protein of unknown function (DUF948) Baculo_PEP_C PF04513.12 EME70722.1 - 0.03 14.4 0.0 0.086 12.9 0.0 1.7 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus MFS_1 PF07690.16 EME70724.1 - 9.9e-37 126.7 40.1 9.9e-37 126.7 40.1 1.6 1 1 0 1 1 1 1 Major Facilitator Superfamily UCR_UQCRX_QCR9 PF05365.12 EME70724.1 - 5.7 7.0 5.8 4.2 7.4 0.0 3.0 3 0 0 3 3 3 0 Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like SDF PF00375.18 EME70725.1 - 4.3e-101 338.7 33.9 4.9e-101 338.6 33.9 1.0 1 0 0 1 1 1 1 Sodium:dicarboxylate symporter family Hemerythrin PF01814.23 EME70726.1 - 1.2e-10 42.1 1.3 1.5e-10 41.8 1.3 1.0 1 0 0 1 1 1 1 Hemerythrin HHE cation binding domain Oxidored_FMN PF00724.20 EME70727.1 - 1.6e-60 205.2 0.0 1.9e-60 205.0 0.0 1.0 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family Dus PF01207.17 EME70727.1 - 0.0062 15.7 0.0 0.013 14.6 0.0 1.5 2 0 0 2 2 2 1 Dihydrouridine synthase (Dus) G3P_antiterm PF04309.12 EME70727.1 - 0.17 11.3 0.1 0.32 10.4 0.1 1.4 1 0 0 1 1 1 0 Glycerol-3-phosphate responsive antiterminator TetR_N PF00440.23 EME70728.1 - 1.9e-13 50.0 0.2 3.9e-13 49.0 0.2 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family OHCU_decarbox PF09349.10 EME70728.1 - 0.084 13.4 0.0 0.15 12.5 0.0 1.4 1 0 0 1 1 1 0 OHCU decarboxylase TetR_C_31 PF17940.1 EME70728.1 - 0.094 12.9 2.2 0.47 10.7 0.2 2.2 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain MFS_1 PF07690.16 EME70729.1 - 5.5e-39 134.1 70.5 3e-33 115.2 48.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_4 PF06779.14 EME70729.1 - 1.2e-06 28.1 34.8 0.00072 19.0 8.4 2.2 2 0 0 2 2 2 2 Uncharacterised MFS-type transporter YbfB DUF2517 PF10725.9 EME70729.1 - 0.71 9.7 3.4 0.34 10.7 0.5 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2517) MaoC_dehydratas PF01575.19 EME70730.1 - 1.4e-12 47.3 0.0 1.7e-12 47.0 0.0 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 EME70730.1 - 9.2e-10 38.8 0.0 1.2e-09 38.4 0.0 1.1 1 0 0 1 1 1 1 N-terminal half of MaoC dehydratase Glyco_hydro_25 PF01183.20 EME70731.1 - 3.6e-24 85.9 0.0 6.1e-24 85.2 0.0 1.3 1 1 0 1 1 1 1 Glycosyl hydrolases family 25 DUF4065 PF13274.6 EME70732.1 - 4.6e-07 30.7 0.0 2.6e-06 28.3 0.0 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF4065) Fer2_2 PF01799.20 EME70733.1 - 3.2e-30 104.0 2.3 9.5e-30 102.4 0.0 2.0 2 0 0 2 2 2 1 [2Fe-2S] binding domain Fer2 PF00111.27 EME70733.1 - 7.2e-08 32.3 1.0 1.5e-07 31.2 0.4 1.8 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.6 EME70733.1 - 0.0013 18.8 0.6 0.0013 18.8 0.6 1.9 2 1 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.6 EME70733.1 - 0.0021 18.0 0.6 0.0021 18.0 0.6 1.5 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain BIR PF00653.21 EME70733.1 - 0.063 13.9 0.2 0.33 11.6 0.1 2.0 2 0 0 2 2 2 0 Inhibitor of Apoptosis domain FAD_binding_5 PF00941.21 EME70734.1 - 3e-37 128.0 0.0 3.9e-37 127.6 0.0 1.1 1 0 0 1 1 1 1 FAD binding domain in molybdopterin dehydrogenase CO_deh_flav_C PF03450.17 EME70734.1 - 0.0002 21.5 1.3 0.0053 16.9 0.4 2.9 2 1 0 2 2 2 1 CO dehydrogenase flavoprotein C-terminal domain NTP_transf_3 PF12804.7 EME70735.1 - 1.4e-39 136.0 7.5 1.8e-39 135.7 7.5 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 EME70735.1 - 1.4e-05 25.0 0.2 1.9e-05 24.5 0.2 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Aminotran_5 PF00266.19 EME70736.1 - 6.7e-118 393.9 0.0 7.6e-118 393.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 EME70736.1 - 1.8e-06 27.5 0.1 2.9e-06 26.9 0.1 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 EME70736.1 - 1.8e-05 23.4 0.0 2.6e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.21 EME70736.1 - 0.00028 20.2 0.0 0.006 15.8 0.0 2.4 2 1 0 2 2 2 1 Aminotransferase class I and II NifU_N PF01592.16 EME70737.1 - 0.00032 20.8 0.0 0.0004 20.5 0.0 1.2 1 0 0 1 1 1 1 NifU-like N terminal domain 2-ph_phosp PF04029.14 EME70738.1 - 0.14 11.3 0.1 2.7 7.1 0.0 2.2 2 0 0 2 2 2 0 2-phosphosulpholactate phosphatase HATPase_c PF02518.26 EME70739.1 - 1.3e-20 74.0 0.0 3.6e-20 72.5 0.0 1.8 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 EME70739.1 - 2.2e-11 43.6 0.2 6.3e-10 38.9 0.0 2.9 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain dCache_1 PF02743.18 EME70739.1 - 4.5e-08 33.2 0.0 8.1e-08 32.4 0.0 1.4 1 0 0 1 1 1 1 Cache domain FAA_hydrolase PF01557.18 EME70740.1 - 8e-52 176.1 0.0 9.2e-52 175.9 0.0 1.0 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family Peripla_BP_6 PF13458.6 EME70741.1 - 1.1e-72 245.6 10.8 1.4e-72 245.3 10.8 1.0 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 EME70741.1 - 7.6e-29 100.8 0.0 9.5e-29 100.5 0.0 1.0 1 0 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.28 EME70741.1 - 1.5e-12 47.3 0.0 2e-12 46.9 0.0 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region LppC PF04348.13 EME70741.1 - 1.6e-09 37.1 0.1 2.9e-09 36.3 0.0 1.4 2 0 0 2 2 2 1 LppC putative lipoprotein TAT_signal PF10518.9 EME70741.1 - 0.00082 19.1 0.4 0.00082 19.1 0.4 3.0 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence TCRP1 PF14944.6 EME70741.1 - 0.95 9.4 4.5 5.8 6.8 1.4 2.7 2 1 0 2 2 2 0 Tongue Cancer Chemotherapy Resistant Protein 1 BPD_transp_2 PF02653.16 EME70742.1 - 4.6e-41 140.8 38.0 5.7e-41 140.5 38.0 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Phage_HK97_TLTM PF06120.11 EME70742.1 - 8.9 5.4 4.9 13 4.8 4.9 1.2 1 0 0 1 1 1 0 Tail length tape measure protein BPD_transp_2 PF02653.16 EME70743.1 - 1.9e-36 125.6 42.8 1.9e-36 125.6 42.8 1.4 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component ABC_tran PF00005.27 EME70744.1 - 7.9e-28 97.7 0.0 1e-27 97.3 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 EME70744.1 - 1.5e-05 25.0 0.0 0.011 15.6 0.0 2.5 2 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 EME70744.1 - 0.00017 21.1 0.0 0.00036 20.0 0.0 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 EME70744.1 - 0.00036 20.2 0.0 0.00068 19.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain BCA_ABC_TP_C PF12399.8 EME70744.1 - 0.00056 19.8 0.0 0.001 18.9 0.0 1.5 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_23 PF13476.6 EME70744.1 - 0.0013 19.3 0.3 0.002 18.7 0.3 1.2 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 EME70744.1 - 0.0048 16.8 0.0 0.0083 16.0 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase MMR_HSR1 PF01926.23 EME70744.1 - 0.006 16.7 0.0 0.015 15.4 0.0 1.6 2 0 0 2 2 2 1 50S ribosome-binding GTPase ATP_bind_1 PF03029.17 EME70744.1 - 0.0079 16.0 0.1 0.015 15.1 0.1 1.4 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein SRP54 PF00448.22 EME70744.1 - 0.0084 15.8 0.0 0.057 13.0 0.0 2.0 1 1 1 2 2 2 1 SRP54-type protein, GTPase domain AAA_16 PF13191.6 EME70744.1 - 0.0085 16.5 0.6 0.027 14.9 0.6 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 EME70744.1 - 0.011 15.5 2.1 0.11 12.2 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_27 PF13514.6 EME70744.1 - 0.013 15.1 0.1 0.023 14.3 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 EME70744.1 - 0.036 14.3 0.1 0.23 11.7 0.1 2.2 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.6 EME70744.1 - 0.048 13.4 0.0 0.065 12.9 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain Thymidylate_kin PF02223.17 EME70744.1 - 0.094 12.4 0.0 0.17 11.5 0.0 1.4 1 0 0 1 1 1 0 Thymidylate kinase AAA_10 PF12846.7 EME70744.1 - 0.11 11.4 0.1 0.26 10.2 0.0 1.5 2 0 0 2 2 2 0 AAA-like domain AAA_33 PF13671.6 EME70744.1 - 0.13 12.4 0.2 0.28 11.3 0.1 1.8 2 1 0 2 2 2 0 AAA domain Dynamin_N PF00350.23 EME70744.1 - 0.19 11.8 0.0 0.32 11.0 0.0 1.3 1 0 0 1 1 1 0 Dynamin family ABC_tran PF00005.27 EME70745.1 - 2.3e-31 109.1 0.0 3.4e-31 108.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 EME70745.1 - 5.4e-06 26.4 0.0 0.061 13.1 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_25 PF13481.6 EME70745.1 - 0.00022 20.8 0.3 0.063 12.9 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.6 EME70745.1 - 0.00025 20.7 0.1 0.00052 19.7 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 EME70745.1 - 0.00025 21.0 0.3 0.00042 20.3 0.3 1.3 1 0 0 1 1 1 1 RsgA GTPase NTPase_1 PF03266.15 EME70745.1 - 0.0013 18.7 0.3 0.4 10.6 0.1 2.1 2 0 0 2 2 2 2 NTPase MMR_HSR1 PF01926.23 EME70745.1 - 0.0057 16.7 0.1 0.011 15.7 0.1 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase NACHT PF05729.12 EME70745.1 - 0.011 15.7 0.1 0.026 14.4 0.1 1.6 1 0 0 1 1 1 0 NACHT domain AAA_16 PF13191.6 EME70745.1 - 0.012 16.0 0.1 0.019 15.4 0.1 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.6 EME70745.1 - 0.018 15.3 0.4 0.32 11.3 0.4 2.2 1 1 0 1 1 1 0 AAA domain SMC_N PF02463.19 EME70745.1 - 0.025 14.0 0.1 0.11 12.0 0.1 1.9 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain MCM PF00493.23 EME70745.1 - 0.062 12.4 0.0 0.12 11.5 0.0 1.4 1 0 0 1 1 1 0 MCM P-loop domain ABC_ATPase PF09818.9 EME70745.1 - 0.073 11.9 1.2 4.5 5.9 0.1 2.3 2 1 0 2 2 2 0 Predicted ATPase of the ABC class IstB_IS21 PF01695.17 EME70745.1 - 0.084 12.6 0.2 2 8.1 0.1 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein DUF815 PF05673.13 EME70745.1 - 0.13 11.4 0.2 0.22 10.6 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) KdpD PF02702.17 EME70745.1 - 0.13 11.7 0.1 1.2 8.6 0.0 2.1 2 0 0 2 2 2 0 Osmosensitive K+ channel His kinase sensor domain MobB PF03205.14 EME70745.1 - 0.15 12.0 0.1 0.24 11.3 0.1 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_30 PF13604.6 EME70745.1 - 0.15 11.7 1.5 0.78 9.4 1.0 2.3 1 1 1 2 2 2 0 AAA domain AAA_24 PF13479.6 EME70745.1 - 0.16 11.7 0.1 0.84 9.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.6 EME70745.1 - 0.18 12.1 0.1 5.6 7.3 0.1 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AMP-binding PF00501.28 EME70746.1 - 5.1e-92 308.7 0.0 6e-92 308.4 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 EME70746.1 - 1.3e-21 77.4 1.6 3.6e-21 75.9 1.1 2.0 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain LexA_DNA_bind PF01726.16 EME70749.1 - 7.2e-14 51.3 0.2 1.6e-12 47.0 0.1 2.2 2 0 0 2 2 2 1 LexA DNA binding domain Peptidase_S24 PF00717.23 EME70749.1 - 5.6e-12 45.4 0.0 1e-11 44.6 0.0 1.5 1 0 0 1 1 1 1 Peptidase S24-like MarR_2 PF12802.7 EME70749.1 - 0.0067 16.3 0.1 0.014 15.3 0.1 1.6 1 0 0 1 1 1 1 MarR family MarR PF01047.22 EME70749.1 - 0.017 15.0 0.1 0.043 13.8 0.1 1.7 1 1 0 1 1 1 0 MarR family HTH_IclR PF09339.10 EME70749.1 - 0.033 14.0 0.0 0.073 12.9 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF1967 PF09269.11 EME70749.1 - 0.048 13.6 0.2 0.68 9.9 0.0 2.6 2 1 1 3 3 3 0 Domain of unknown function (DUF1967) MoeA_N PF03453.17 EME70750.1 - 7.5e-42 142.8 1.9 1.1e-41 142.2 1.9 1.3 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 EME70750.1 - 7.6e-25 87.3 0.2 4.1e-24 84.9 0.1 2.0 2 0 0 2 2 2 1 Probable molybdopterin binding domain MoeA_C PF03454.15 EME70750.1 - 1.6e-16 60.2 0.6 1e-15 57.6 0.0 2.7 4 1 0 4 4 4 1 MoeA C-terminal region (domain IV) MoaC PF01967.21 EME70751.1 - 9.7e-59 197.3 2.2 1.1e-58 197.1 2.2 1.0 1 0 0 1 1 1 1 MoaC family Urease_gamma PF00547.18 EME70751.1 - 0.05 13.9 1.3 0.5 10.7 0.2 2.1 2 0 0 2 2 2 0 Urease, gamma subunit IGPS PF00218.21 EME70752.1 - 3.8e-93 311.3 0.0 4.3e-93 311.1 0.0 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase Glycos_transf_3 PF00591.21 EME70753.1 - 4.7e-97 324.5 4.9 6.7e-97 324.0 4.9 1.1 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 EME70753.1 - 1.6e-17 63.1 1.1 1.6e-17 63.1 1.1 1.9 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain GATase PF00117.28 EME70754.1 - 3e-55 186.9 0.0 3.5e-55 186.7 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 EME70754.1 - 4.9e-10 39.5 0.3 2.1e-09 37.5 0.3 1.8 1 1 0 1 1 1 1 Peptidase C26 Formyl_trans_N PF00551.19 EME70755.1 - 3.2e-07 30.3 0.0 4.5e-07 29.8 0.0 1.2 1 0 0 1 1 1 1 Formyl transferase DUF4395 PF14340.6 EME70756.1 - 1.1e-16 61.3 9.5 1.2e-16 61.2 9.5 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4395) DUF2892 PF11127.8 EME70756.1 - 0.21 11.7 10.6 2.3 8.3 3.8 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2892) RadC PF04002.15 EME70757.1 - 8.3e-43 145.2 0.0 1.3e-42 144.5 0.0 1.3 1 0 0 1 1 1 1 RadC-like JAB domain Prok-JAB PF14464.6 EME70757.1 - 0.00042 20.1 0.1 0.0007 19.4 0.1 1.3 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain HHH_2 PF12826.7 EME70757.1 - 0.0027 17.7 0.0 0.0053 16.8 0.0 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 EME70757.1 - 0.051 14.2 0.2 0.12 13.0 0.2 1.6 1 0 0 1 1 1 0 Helix-hairpin-helix domain AphA_like PF14557.6 EME70758.1 - 2.2e-74 248.9 1.8 2.5e-74 248.7 1.8 1.0 1 0 0 1 1 1 1 Putative AphA-like transcriptional regulator Vir_act_alpha_C PF10400.9 EME70758.1 - 0.018 15.7 1.3 0.037 14.7 1.3 1.5 1 0 0 1 1 1 0 Virulence activator alpha C-term Mito_fiss_Elm1 PF06258.11 EME70759.1 - 2.7e-90 302.6 0.0 3.1e-90 302.5 0.0 1.0 1 0 0 1 1 1 1 Mitochondrial fission ELM1 Trypsin PF00089.26 EME70760.1 - 8.5e-13 48.6 0.0 7.4e-12 45.5 0.0 1.9 1 1 0 1 1 1 1 Trypsin Trypsin_2 PF13365.6 EME70760.1 - 1.5e-09 38.9 0.0 2.2e-09 38.4 0.0 1.2 1 0 0 1 1 1 1 Trypsin-like peptidase domain Peptidase_S46 PF10459.9 EME70760.1 - 0.19 10.4 0.0 1.2 7.7 0.0 1.9 2 0 0 2 2 2 0 Peptidase S46 Macro PF01661.21 EME70761.1 - 1.7e-43 147.4 0.0 2.3e-43 147.0 0.0 1.2 1 0 0 1 1 1 1 Macro domain Glyoxalase PF00903.25 EME70762.1 - 5.2e-14 52.5 0.0 6.2e-14 52.3 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 EME70762.1 - 7.9e-13 48.6 0.0 1e-12 48.3 0.0 1.2 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.6 EME70762.1 - 7.2e-07 29.5 0.0 8.8e-07 29.2 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_6 PF18029.1 EME70762.1 - 2e-05 25.3 0.1 3e-05 24.8 0.1 1.3 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_2 PF12681.7 EME70762.1 - 0.00011 22.1 0.0 0.089 12.7 0.0 2.1 2 0 0 2 2 2 2 Glyoxalase-like domain adh_short PF00106.25 EME70764.1 - 2.9e-43 147.6 0.1 3.3e-43 147.4 0.1 1.0 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 EME70764.1 - 3.9e-36 124.8 1.8 5.4e-36 124.3 1.8 1.2 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 EME70764.1 - 2.8e-12 46.9 0.4 3.6e-12 46.6 0.4 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 EME70764.1 - 8.8e-07 28.6 0.5 4.5e-06 26.3 0.5 2.0 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 EME70764.1 - 0.0024 17.8 1.1 0.041 13.8 0.4 2.2 2 0 0 2 2 2 1 NAD(P)H-binding RmlD_sub_bind PF04321.17 EME70764.1 - 0.047 12.8 0.4 0.75 8.8 0.0 2.5 2 1 0 2 2 2 0 RmlD substrate binding domain GATase_6 PF13522.6 EME70765.1 - 3.9e-19 69.2 0.0 8e-19 68.2 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 EME70765.1 - 9.2e-19 67.6 0.0 2.3e-18 66.3 0.0 1.6 1 1 0 1 1 1 1 Glutamine amidotransferase domain Pribosyltran PF00156.27 EME70765.1 - 6.4e-10 38.8 0.4 1.1e-09 38.0 0.4 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain GATase_4 PF13230.6 EME70765.1 - 7.1e-05 21.8 0.1 0.00014 20.9 0.1 1.4 1 0 0 1 1 1 1 Glutamine amidotransferases class-II PRTase_2 PF15609.6 EME70765.1 - 0.078 12.5 0.1 0.15 11.6 0.1 1.4 1 0 0 1 1 1 0 Phosphoribosyl transferase MctB PF11382.8 EME70765.1 - 0.12 12.1 0.1 0.21 11.3 0.1 1.3 1 0 0 1 1 1 0 Copper transport outer membrane protein, MctB Colicin_V PF02674.16 EME70766.1 - 2.8e-33 114.9 7.9 3.6e-33 114.6 7.9 1.1 1 0 0 1 1 1 1 Colicin V production protein AAA_25 PF13481.6 EME70767.1 - 2.1e-13 50.3 0.3 6e-13 48.8 0.3 1.8 1 1 0 1 1 1 1 AAA domain ATPase PF06745.13 EME70767.1 - 4.5e-13 49.1 0.0 7.7e-08 32.0 0.0 2.2 1 1 1 2 2 2 2 KaiC Rubredoxin_2 PF18073.1 EME70767.1 - 5.9e-12 45.1 3.7 1e-11 44.3 3.7 1.4 1 0 0 1 1 1 1 Rubredoxin metal binding domain ChlI PF13541.6 EME70767.1 - 6.4e-09 35.7 0.1 1.2e-08 34.8 0.1 1.4 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase AAA_16 PF13191.6 EME70767.1 - 3.6e-06 27.5 0.2 8.8e-06 26.2 0.2 1.7 1 0 0 1 1 1 1 AAA ATPase domain Lon_C PF05362.13 EME70767.1 - 6.2e-06 25.9 0.2 1.3e-05 24.9 0.2 1.4 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain DnaB_C PF03796.15 EME70767.1 - 0.00017 21.0 0.0 0.00063 19.2 0.0 1.7 1 1 1 2 2 2 1 DnaB-like helicase C terminal domain AAA_22 PF13401.6 EME70767.1 - 0.00051 20.3 0.0 0.0012 19.1 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 EME70767.1 - 0.0015 18.9 0.0 0.0026 18.2 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 EME70767.1 - 0.0016 18.2 0.0 0.0055 16.4 0.0 1.8 2 0 0 2 2 2 1 AAA domain GvpD PF07088.11 EME70767.1 - 0.0016 17.1 0.1 0.1 11.2 0.0 2.5 1 1 1 3 3 3 1 GvpD gas vesicle protein NTPase_1 PF03266.15 EME70767.1 - 0.0025 17.7 0.0 0.0087 16.0 0.0 1.9 2 0 0 2 2 2 1 NTPase DUF2075 PF09848.9 EME70767.1 - 0.046 12.9 0.0 0.059 12.6 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) CBM_25 PF03423.13 EME70767.1 - 0.049 13.9 0.0 0.16 12.3 0.0 1.8 1 0 0 1 1 1 0 Carbohydrate binding domain (family 25) AAA_5 PF07728.14 EME70767.1 - 0.079 13.0 0.0 0.17 11.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_14 PF13173.6 EME70767.1 - 0.19 11.8 0.0 0.3 11.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain Gp49 PF05973.14 EME70769.1 - 1.8e-05 24.8 0.0 2.4e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 Phage derived protein Gp49-like (DUF891) MacB_PCD PF12704.7 EME70769.1 - 0.068 13.5 0.1 0.079 13.3 0.1 1.1 1 0 0 1 1 1 0 MacB-like periplasmic core domain ABC_tran PF00005.27 EME70770.1 - 1.1e-30 107.0 0.0 1.4e-30 106.6 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 EME70770.1 - 7.4e-05 22.7 0.0 0.027 14.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 EME70770.1 - 0.003 17.3 0.2 0.0054 16.4 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.29 EME70770.1 - 0.0046 17.4 0.1 0.053 14.0 0.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 EME70770.1 - 0.0079 15.7 0.0 0.013 15.1 0.0 1.2 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_16 PF13191.6 EME70770.1 - 0.012 16.0 0.5 0.017 15.5 0.5 1.4 1 1 0 1 1 1 0 AAA ATPase domain Mg_chelatase PF01078.21 EME70770.1 - 0.015 14.7 0.1 0.049 13.0 0.0 1.7 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI T2SSE PF00437.20 EME70770.1 - 0.019 14.1 0.1 0.034 13.2 0.1 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein MCM PF00493.23 EME70770.1 - 0.027 13.5 0.0 0.053 12.6 0.0 1.4 1 0 0 1 1 1 0 MCM P-loop domain AAA_19 PF13245.6 EME70770.1 - 0.035 14.4 0.5 0.051 13.9 0.5 1.7 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 EME70770.1 - 0.053 13.2 0.0 0.091 12.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.25 EME70770.1 - 0.086 12.5 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_22 PF13401.6 EME70770.1 - 0.09 13.0 0.1 0.16 12.2 0.2 1.6 1 1 1 2 2 2 0 AAA domain SMC_N PF02463.19 EME70770.1 - 0.1 12.0 0.5 2.7 7.4 0.5 2.1 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 EME70770.1 - 0.11 12.4 0.3 0.18 11.7 0.3 1.2 1 0 0 1 1 1 0 RsgA GTPase MukB PF04310.12 EME70770.1 - 0.14 11.9 0.1 0.19 11.5 0.1 1.1 1 0 0 1 1 1 0 MukB N-terminal FtsK_SpoIIIE PF01580.18 EME70770.1 - 0.19 11.1 0.2 0.32 10.3 0.2 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family MlaE PF02405.16 EME70771.1 - 1.7e-79 266.4 21.5 2.4e-79 265.9 21.5 1.2 1 0 0 1 1 1 1 Permease MlaE Ala_racemase_N PF01168.20 EME70772.1 - 9.5e-52 175.8 0.0 1.2e-51 175.5 0.0 1.1 1 0 0 1 1 1 1 Alanine racemase, N-terminal domain Ala_racemase_C PF00842.21 EME70772.1 - 6.1e-33 113.3 0.1 8.5e-33 112.8 0.1 1.2 1 0 0 1 1 1 1 Alanine racemase, C-terminal domain DnaB_C PF03796.15 EME70773.1 - 6.9e-106 353.3 0.1 9.1e-106 352.9 0.1 1.2 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain DnaB PF00772.21 EME70773.1 - 7.3e-31 106.3 0.0 1.4e-30 105.4 0.0 1.5 1 0 0 1 1 1 1 DnaB-like helicase N terminal domain AAA_25 PF13481.6 EME70773.1 - 1e-13 51.3 0.2 3.6e-13 49.5 0.0 1.9 2 0 0 2 2 2 1 AAA domain ATPase PF06745.13 EME70773.1 - 0.00067 19.1 0.1 0.002 17.5 0.1 1.9 1 1 0 1 1 1 1 KaiC AAA PF00004.29 EME70773.1 - 0.0085 16.5 0.2 0.1 13.0 0.2 2.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 EME70773.1 - 0.016 15.6 0.2 0.09 13.1 0.1 2.4 2 1 0 2 2 2 0 AAA ATPase domain AAA_28 PF13521.6 EME70773.1 - 0.43 10.8 2.9 1.2 9.4 0.1 2.8 2 2 1 3 3 3 0 AAA domain Ribosomal_L9_C PF03948.14 EME70774.1 - 2e-25 89.1 0.0 4.1e-25 88.0 0.0 1.6 1 0 0 1 1 1 1 Ribosomal protein L9, C-terminal domain Ribosomal_L9_N PF01281.19 EME70774.1 - 7.2e-22 76.7 0.3 1.7e-21 75.5 0.1 1.8 2 0 0 2 2 2 1 Ribosomal protein L9, N-terminal domain LPD26 PF18842.1 EME70774.1 - 0.065 13.2 0.5 0.19 11.7 0.1 1.9 2 0 0 2 2 2 0 Large polyvalent protein associated domain 26 FDF PF09532.10 EME70774.1 - 0.66 10.9 4.1 1.3 9.9 0.0 2.1 2 0 0 2 2 2 0 FDF domain DUF2232 PF09991.9 EME70775.1 - 1.7e-07 30.7 18.5 2.3e-06 27.0 18.5 2.0 1 1 0 1 1 1 1 Predicted membrane protein (DUF2232) Ribosomal_S18 PF01084.20 EME70776.1 - 6.8e-25 87.0 0.4 8.6e-25 86.7 0.4 1.1 1 0 0 1 1 1 1 Ribosomal protein S18 Ribosomal_S6 PF01250.17 EME70777.1 - 1.5e-28 98.9 0.1 1.8e-28 98.6 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S6 Acyl_transf_1 PF00698.21 EME70778.1 - 1.3e-37 130.1 5.9 1.5e-37 129.8 5.9 1.0 1 0 0 1 1 1 1 Acyl transferase domain Pik1 PF11522.8 EME70778.1 - 0.17 11.9 0.0 0.33 11.0 0.0 1.4 1 0 0 1 1 1 0 Yeast phosphatidylinositol-4-OH kinase Pik1 adh_short_C2 PF13561.6 EME70779.1 - 2.2e-62 210.7 12.2 2.5e-62 210.5 12.2 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 EME70779.1 - 5.7e-56 189.1 4.8 7.5e-56 188.7 4.8 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 EME70779.1 - 1.9e-20 73.5 3.4 2.7e-20 73.1 3.4 1.3 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 EME70779.1 - 0.00031 20.3 1.4 0.00074 19.0 1.5 1.9 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 EME70779.1 - 0.00031 20.7 5.5 0.00041 20.3 5.5 1.2 1 0 0 1 1 1 1 NAD(P)H-binding Seadorna_Vp10 PF07322.11 EME70779.1 - 0.0041 16.6 0.0 0.0066 15.9 0.0 1.3 1 0 0 1 1 1 1 Seadornavirus Vp10 F420_oxidored PF03807.17 EME70779.1 - 0.019 15.5 2.1 7.9 7.1 1.0 2.6 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent THF_DHG_CYH_C PF02882.19 EME70779.1 - 0.039 13.3 0.4 0.27 10.5 0.0 2.4 2 1 1 3 3 3 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain RmlD_sub_bind PF04321.17 EME70779.1 - 0.12 11.5 2.9 0.078 12.1 0.9 1.7 2 0 0 2 2 2 0 RmlD substrate binding domain NmrA PF05368.13 EME70779.1 - 0.15 11.6 2.3 0.18 11.3 1.0 1.7 2 0 0 2 2 2 0 NmrA-like family PP-binding PF00550.25 EME70780.1 - 8.2e-13 48.5 0.6 9.1e-13 48.4 0.6 1.0 1 0 0 1 1 1 1 Phosphopantetheine attachment site PP-binding_2 PF14573.6 EME70780.1 - 1e-05 25.7 1.4 1.1e-05 25.6 1.4 1.2 1 0 0 1 1 1 1 Acyl-carrier DUF1493 PF07377.12 EME70780.1 - 0.0035 17.8 0.3 0.0038 17.7 0.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1493) Ribosomal_L12_N PF16320.5 EME70780.1 - 0.09 12.5 2.5 0.2 11.4 0.7 2.4 2 1 1 3 3 3 0 Ribosomal protein L7/L12 dimerisation domain ketoacyl-synt PF00109.26 EME70781.1 - 1.4e-59 201.7 0.4 1.4e-59 201.7 0.4 1.6 2 0 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain Ketoacyl-synt_C PF02801.22 EME70781.1 - 1.2e-35 122.0 1.5 2.3e-35 121.1 1.5 1.5 1 0 0 1 1 1 1 Beta-ketoacyl synthase, C-terminal domain Thiolase_N PF00108.23 EME70781.1 - 1e-05 25.0 0.4 0.00014 21.3 0.2 2.1 2 0 0 2 2 2 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 EME70781.1 - 0.00099 18.8 5.5 0.0031 17.2 0.3 3.2 3 1 1 4 4 4 1 Thiolase, C-terminal domain KAsynt_C_assoc PF16197.5 EME70781.1 - 0.023 15.1 0.0 0.058 13.9 0.0 1.7 1 0 0 1 1 1 0 Ketoacyl-synthetase C-terminal extension YceG PF02618.16 EME70782.1 - 2.3e-79 266.8 0.0 2.7e-79 266.6 0.0 1.0 1 0 0 1 1 1 1 YceG-like family Cupin_2 PF07883.11 EME70782.1 - 0.005 16.5 0.1 0.86 9.4 0.0 2.5 2 0 0 2 2 2 2 Cupin domain Protoglobin PF11563.8 EME70783.1 - 5.4e-34 117.4 0.0 2.2e-33 115.4 0.0 2.0 2 0 0 2 2 2 1 Protoglobin MCPsignal PF00015.21 EME70783.1 - 3.7e-25 88.7 30.3 6.5e-25 87.9 18.8 2.5 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain DHR10 PF18595.1 EME70783.1 - 0.0095 16.0 1.2 0.0095 16.0 1.2 2.1 2 0 0 2 2 2 1 Designed helical repeat protein 10 domain DUF948 PF06103.11 EME70783.1 - 0.014 15.6 19.0 1.5 9.1 1.5 4.0 2 2 1 3 3 3 0 Bacterial protein of unknown function (DUF948) DUF1664 PF07889.12 EME70783.1 - 0.055 13.5 9.0 0.087 12.9 0.5 2.9 3 1 0 3 3 3 0 Protein of unknown function (DUF1664) Lipoprotein_7 PF01540.16 EME70783.1 - 0.071 12.4 0.3 0.17 11.2 0.1 1.6 1 1 0 1 1 1 0 Adhesin lipoprotein BLOC1_2 PF10046.9 EME70783.1 - 0.18 12.1 3.3 7.7 6.9 0.1 3.3 2 1 1 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 V_ATPase_I PF01496.19 EME70783.1 - 1.1 7.0 3.1 1.6 6.5 3.1 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family YuzL PF14115.6 EME70783.1 - 1.8 9.1 3.8 1.3 9.5 0.5 2.5 2 0 0 2 2 2 0 YuzL-like protein DUF815 PF05673.13 EME70784.1 - 1.1e-103 345.8 0.0 1.3e-103 345.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_16 PF13191.6 EME70784.1 - 7.6e-09 36.2 0.2 9.3e-07 29.4 0.0 2.6 1 1 1 2 2 2 1 AAA ATPase domain AAA PF00004.29 EME70784.1 - 0.00043 20.7 0.0 0.0012 19.2 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 EME70784.1 - 0.009 15.7 0.0 0.016 15.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 EME70784.1 - 0.018 14.8 0.0 0.036 13.8 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_7 PF12775.7 EME70784.1 - 0.046 13.2 0.0 1.2 8.6 0.0 2.1 2 0 0 2 2 2 0 P-loop containing dynein motor region AAA_28 PF13521.6 EME70784.1 - 0.058 13.6 0.0 0.14 12.4 0.0 1.7 1 0 0 1 1 1 0 AAA domain Sigma54_activat PF00158.26 EME70784.1 - 0.068 12.9 0.0 0.2 11.3 0.0 1.8 1 1 1 2 2 2 0 Sigma-54 interaction domain AAA_22 PF13401.6 EME70784.1 - 0.13 12.5 0.0 0.26 11.5 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.6 EME70784.1 - 0.13 12.3 0.0 0.24 11.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain YajC PF02699.15 EME70785.1 - 5.7e-30 103.0 1.1 6.8e-30 102.8 1.1 1.1 1 0 0 1 1 1 1 Preprotein translocase subunit Orf78 PF06024.12 EME70785.1 - 0.0051 17.1 0.0 0.0077 16.5 0.0 1.3 1 0 0 1 1 1 1 Orf78 (ac78) AIRS_C PF02769.22 EME70785.1 - 0.0065 16.6 0.0 0.0083 16.3 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain YMF19 PF02326.15 EME70785.1 - 0.12 13.2 0.1 0.2 12.4 0.1 1.3 1 0 0 1 1 1 0 Plant ATP synthase F0 SecD_SecF PF02355.16 EME70786.1 - 8.1e-16 58.0 10.2 1.7e-15 56.9 10.2 1.5 1 0 0 1 1 1 1 Protein export membrane protein SecD-TM1 PF13721.6 EME70786.1 - 9.3e-08 32.5 2.8 0.014 15.8 0.0 3.3 3 0 0 3 3 3 2 SecD export protein N-terminal TM region MMPL PF03176.15 EME70786.1 - 3.3e-06 26.2 20.8 6.1e-06 25.4 20.8 1.3 1 0 0 1 1 1 1 MMPL family Sec_GG PF07549.14 EME70786.1 - 6.4e-05 22.3 0.3 0.00015 21.1 0.3 1.6 1 0 0 1 1 1 1 SecD/SecF GG Motif ACR_tran PF00873.19 EME70786.1 - 0.2 9.3 13.9 0.28 8.8 13.9 1.1 1 0 0 1 1 1 0 AcrB/AcrD/AcrF family SecD_SecF PF02355.16 EME70787.1 - 7.3e-65 217.9 6.8 9.8e-65 217.5 6.8 1.2 1 0 0 1 1 1 1 Protein export membrane protein Sec_GG PF07549.14 EME70787.1 - 7.1e-08 31.7 0.0 2.8e-07 29.8 0.0 2.1 2 0 0 2 2 2 1 SecD/SecF GG Motif DUF498 PF04430.14 EME70788.1 - 2.5e-33 114.4 0.0 2.8e-33 114.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF498/DUF598) Sod_Fe_C PF02777.18 EME70789.1 - 7.9e-36 122.3 1.1 3.6e-35 120.2 0.1 2.1 2 1 0 2 2 2 1 Iron/manganese superoxide dismutases, C-terminal domain Sod_Fe_N PF00081.22 EME70789.1 - 3.1e-33 114.1 0.6 5.1e-33 113.4 0.6 1.3 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, alpha-hairpin domain Amino_oxidase PF01593.24 EME70790.1 - 2e-29 103.2 2.0 1.5e-16 60.7 0.1 3.2 1 1 1 2 2 2 2 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 EME70790.1 - 1e-09 38.4 3.8 1e-09 38.4 3.8 2.0 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.7 EME70790.1 - 1.1e-05 25.0 5.1 1.8e-05 24.3 5.1 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 EME70790.1 - 0.00012 21.3 7.8 0.00027 20.2 7.8 1.5 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 EME70790.1 - 0.00021 20.7 1.6 0.014 14.7 2.5 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 EME70790.1 - 0.00049 19.3 4.0 0.00069 18.8 4.0 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A AlaDh_PNT_C PF01262.21 EME70790.1 - 0.019 14.3 1.1 0.028 13.7 1.1 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain HI0933_like PF03486.14 EME70790.1 - 0.055 12.2 4.2 0.085 11.5 4.2 1.2 1 0 0 1 1 1 0 HI0933-like protein Pyr_redox_3 PF13738.6 EME70790.1 - 0.068 12.4 1.4 0.096 11.9 1.4 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 EME70790.1 - 0.2 11.2 7.0 3.8 7.0 5.1 2.3 2 0 0 2 2 2 0 FAD dependent oxidoreductase 3HCDH_N PF02737.18 EME70790.1 - 0.27 11.1 0.9 0.39 10.6 0.9 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_3 PF01494.19 EME70790.1 - 1.6 7.9 3.5 1.4 8.0 2.1 1.5 2 0 0 2 2 2 0 FAD binding domain SQS_PSY PF00494.19 EME70791.1 - 3.2e-47 161.2 7.6 3.7e-47 161.0 7.6 1.0 1 0 0 1 1 1 1 Squalene/phytoene synthase SQS_PSY PF00494.19 EME70792.1 - 6.6e-47 160.2 2.5 8.1e-47 159.9 2.5 1.0 1 0 0 1 1 1 1 Squalene/phytoene synthase Aldedh PF00171.22 EME70793.1 - 4.5e-107 358.4 0.0 6.7e-107 357.8 0.0 1.2 1 0 0 1 1 1 1 Aldehyde dehydrogenase family Pro_dh PF01619.18 EME70793.1 - 4.2e-91 305.6 0.0 7.7e-91 304.7 0.0 1.4 2 0 0 2 2 2 1 Proline dehydrogenase Pro_dh-DNA_bdg PF14850.6 EME70793.1 - 1.7e-42 144.4 0.0 3.8e-42 143.3 0.0 1.6 1 0 0 1 1 1 1 DNA-binding domain of Proline dehydrogenase PRODH PF18327.1 EME70793.1 - 0.0015 18.7 6.0 0.0062 16.7 3.4 3.3 2 0 0 2 2 2 1 Proline utilization A proline dehydrogenase N-terminal domain DUF2892 PF11127.8 EME70794.1 - 9.2e-19 67.2 1.8 9.8e-19 67.2 1.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2892) ACT_6 PF13740.6 EME70795.1 - 1.6e-11 44.0 0.1 6e-05 22.9 0.0 2.3 2 0 0 2 2 2 2 ACT domain ACT PF01842.25 EME70795.1 - 4.6e-11 42.3 0.7 1.6e-05 24.6 0.0 2.3 2 0 0 2 2 2 2 ACT domain ACT_4 PF13291.6 EME70795.1 - 9.1e-07 29.4 0.0 7.2e-05 23.3 0.0 2.2 2 0 0 2 2 2 1 ACT domain Cytochrome_CBB3 PF13442.6 EME70796.1 - 1.5e-15 57.3 0.2 2.5e-15 56.5 0.2 1.4 1 0 0 1 1 1 1 Cytochrome C oxidase, cbb3-type, subunit III Cytochrom_C PF00034.21 EME70796.1 - 1.5e-11 45.2 0.0 2.3e-11 44.6 0.0 1.3 1 0 0 1 1 1 1 Cytochrome c Cytochrom_C1 PF02167.15 EME70796.1 - 0.0077 16.0 0.1 0.011 15.4 0.1 1.2 1 0 0 1 1 1 1 Cytochrome C1 family Methyltransf_24 PF13578.6 EME70797.1 - 5.5e-09 37.0 0.0 9.4e-09 36.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Glyco_transf_41 PF13844.6 EME70798.1 - 8.9e-82 275.0 0.0 1e-41 142.9 0.0 2.1 2 0 0 2 2 2 2 Glycosyl transferase family 41 TPR_2 PF07719.17 EME70798.1 - 7.1e-17 60.1 6.0 2.9e-05 23.8 0.6 5.6 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_1 PF00515.28 EME70798.1 - 1.2e-14 53.4 0.5 0.00013 21.6 0.3 4.6 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_16 PF13432.6 EME70798.1 - 2.9e-12 47.0 42.0 7.3e-06 26.5 8.9 5.6 5 2 1 6 6 5 4 Tetratricopeptide repeat TPR_14 PF13428.6 EME70798.1 - 4.3e-11 42.7 47.7 0.00016 22.2 2.9 9.5 4 1 5 9 9 8 5 Tetratricopeptide repeat TPR_19 PF14559.6 EME70798.1 - 7.9e-11 42.3 31.3 2.6e-05 24.6 0.1 5.1 4 1 2 6 6 5 4 Tetratricopeptide repeat TPR_8 PF13181.6 EME70798.1 - 1.2e-10 40.7 0.1 0.0019 18.2 0.1 4.9 5 0 0 5 5 4 2 Tetratricopeptide repeat ANAPC3 PF12895.7 EME70798.1 - 3e-10 40.2 0.1 0.0018 18.5 0.0 3.4 2 1 1 3 3 3 3 Anaphase-promoting complex, cyclosome, subunit 3 TPR_12 PF13424.6 EME70798.1 - 6.2e-08 32.8 26.9 0.0072 16.6 3.3 6.1 4 2 1 5 5 5 3 Tetratricopeptide repeat TPR_17 PF13431.6 EME70798.1 - 7.8e-08 32.2 3.8 0.063 13.7 0.0 5.3 5 1 1 6 6 5 2 Tetratricopeptide repeat TPR_11 PF13414.6 EME70798.1 - 1.7e-07 30.8 1.7 0.009 15.7 0.2 3.9 2 1 2 4 4 4 2 TPR repeat TPR_7 PF13176.6 EME70798.1 - 4.6e-05 23.1 4.5 0.52 10.5 0.1 5.0 5 0 0 5 5 4 2 Tetratricopeptide repeat TPR_6 PF13174.6 EME70798.1 - 0.00032 21.1 13.5 5.8 7.8 0.1 6.8 8 0 0 8 8 6 1 Tetratricopeptide repeat TPR_4 PF07721.14 EME70798.1 - 0.0019 18.6 0.2 0.0019 18.6 0.2 8.6 10 1 0 10 10 6 2 Tetratricopeptide repeat TPR_9 PF13371.6 EME70798.1 - 0.0024 18.0 4.6 0.0024 18.0 4.6 4.7 4 1 1 5 5 4 2 Tetratricopeptide repeat HrpB1_HrpK PF09613.10 EME70798.1 - 0.0036 16.9 5.1 0.0063 16.2 0.9 2.5 2 0 0 2 2 2 1 Bacterial type III secretion protein (HrpB1_HrpK) BTAD PF03704.17 EME70798.1 - 0.0036 17.8 20.2 0.012 16.1 1.8 4.8 3 1 2 6 6 6 2 Bacterial transcriptional activator domain TPR_20 PF14561.6 EME70798.1 - 0.0077 16.5 9.9 0.039 14.3 0.0 3.8 2 1 0 4 4 4 1 Tetratricopeptide repeat NARP1 PF12569.8 EME70798.1 - 0.0084 15.1 0.0 0.05 12.5 0.0 2.0 2 0 0 2 2 2 1 NMDA receptor-regulated protein 1 DUF5437 PF17505.2 EME70798.1 - 0.026 14.6 1.8 0.11 12.5 0.4 2.9 2 0 0 2 2 2 0 Family of unknown function (DUF5437) TPR_15 PF13429.6 EME70798.1 - 0.028 13.7 5.8 0.064 12.5 0.9 2.8 2 1 1 3 3 3 0 Tetratricopeptide repeat Wzy_C_2 PF11846.8 EME70798.1 - 0.3 11.0 2.2 2.7 7.9 0.1 2.5 2 0 0 2 2 2 0 Virulence factor membrane-bound polymerase, C-terminal T6SS_VasJ PF16989.5 EME70798.1 - 0.36 10.2 4.7 1.3 8.5 0.1 2.6 3 0 0 3 3 3 0 Type VI secretion, EvfE, EvfF, ImpA, BimE, VC_A0119, VasJ TPR_21 PF09976.9 EME70798.1 - 0.58 9.8 5.2 3.7 7.2 1.1 2.7 2 0 0 2 2 2 0 Tetratricopeptide repeat-like domain TPR_10 PF13374.6 EME70798.1 - 2 8.4 29.6 2 8.4 0.3 6.4 7 0 0 7 7 6 0 Tetratricopeptide repeat Metallophos PF00149.28 EME70799.1 - 7.8e-16 59.2 1.7 7.8e-16 59.2 1.7 1.6 2 1 0 2 2 2 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 EME70799.1 - 2.2e-14 54.0 1.8 6.3e-14 52.5 1.8 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.6 EME70799.1 - 0.11 11.9 0.0 0.86 8.9 0.0 2.1 1 1 1 2 2 2 0 Metallophosphoesterase, calcineurin superfamily Glyco_hydro_3 PF00933.21 EME70799.1 - 0.2 11.0 0.0 0.31 10.3 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 3 N terminal domain DAGK_cat PF00781.24 EME70800.1 - 1.8e-18 66.4 0.2 2.5e-18 65.9 0.2 1.2 1 0 0 1 1 1 1 Diacylglycerol kinase catalytic domain NAD_kinase PF01513.21 EME70800.1 - 0.0069 15.6 0.4 0.019 14.2 0.2 1.7 2 0 0 2 2 2 1 ATP-NAD kinase Usp PF00582.26 EME70800.1 - 0.064 13.8 0.1 0.12 12.9 0.1 1.4 1 0 0 1 1 1 0 Universal stress protein family GGDEF PF00990.21 EME70801.1 - 9.3e-37 126.3 0.0 1.7e-36 125.4 0.0 1.4 1 1 0 1 1 1 1 Diguanylate cyclase, GGDEF domain GGDEF_2 PF17853.1 EME70801.1 - 0.018 15.3 0.0 0.032 14.5 0.0 1.5 1 1 0 1 1 1 0 GGDEF-like domain AMP-binding PF00501.28 EME70802.1 - 1.3e-94 317.2 0.2 1.6e-94 316.9 0.2 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 EME70802.1 - 4.1e-23 82.2 0.1 9e-23 81.0 0.1 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain HD PF01966.22 EME70803.1 - 8.7e-18 64.7 0.1 7.6e-17 61.7 0.0 2.2 2 1 0 2 2 2 1 HD domain HD_5 PF13487.6 EME70803.1 - 1.9e-15 56.9 0.0 1.6e-14 53.9 0.0 2.4 1 1 0 1 1 1 1 HD domain Peptidase_M74 PF03411.13 EME70804.1 - 2.9e-92 308.6 0.0 3.3e-92 308.4 0.0 1.0 1 0 0 1 1 1 1 Penicillin-insensitive murein endopeptidase EspF PF04806.12 EME70804.1 - 0.036 14.5 2.3 0.18 12.3 2.3 2.2 1 0 0 1 1 1 0 EspF protein repeat Ribosomal_S2 PF00318.20 EME70805.1 - 8e-95 316.1 0.0 9.5e-95 315.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S2 DUF454 PF04304.13 EME70805.1 - 0.13 12.2 0.0 0.23 11.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF454) EF_TS PF00889.19 EME70806.1 - 4.2e-67 225.8 0.3 5.4e-67 225.4 0.3 1.1 1 0 0 1 1 1 1 Elongation factor TS HOIP-UBA PF16678.5 EME70806.1 - 0.017 15.1 0.1 0.06 13.4 0.0 1.9 2 0 0 2 2 2 0 HOIP UBA domain pair UBA PF00627.31 EME70806.1 - 0.042 13.8 0.1 0.4 10.6 0.0 2.4 2 0 0 2 2 2 0 UBA/TS-N domain AA_kinase PF00696.28 EME70807.1 - 1.4e-29 103.4 1.3 1.6e-29 103.2 1.3 1.0 1 0 0 1 1 1 1 Amino acid kinase family RRF PF01765.19 EME70808.1 - 1.4e-62 210.4 0.8 1.7e-62 210.2 0.8 1.1 1 0 0 1 1 1 1 Ribosome recycling factor SpoIIIAH PF12685.7 EME70808.1 - 0.0035 17.2 0.4 0.0043 16.9 0.4 1.1 1 0 0 1 1 1 1 SpoIIIAH-like protein 14-3-3 PF00244.20 EME70808.1 - 0.0047 16.5 2.4 0.0085 15.6 2.3 1.4 2 0 0 2 2 2 1 14-3-3 protein HTH_19 PF12844.7 EME70808.1 - 0.082 12.9 0.2 0.16 12.0 0.2 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HSCB_C PF07743.13 EME70808.1 - 0.15 12.6 3.2 3.5 8.2 1.5 2.7 2 1 0 3 3 3 0 HSCB C-terminal oligomerisation domain DUF883 PF05957.13 EME70808.1 - 0.17 12.5 1.2 0.53 10.9 0.7 1.9 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF883) Prenyltransf PF01255.19 EME70809.1 - 1.5e-78 263.4 0.0 1.7e-78 263.2 0.0 1.0 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase CTP_transf_1 PF01148.20 EME70810.1 - 1.1e-51 176.2 13.3 1.8e-51 175.4 13.3 1.3 1 1 0 1 1 1 1 Cytidylyltransferase family DXPR_C PF13288.6 EME70811.1 - 3.7e-41 140.0 0.0 5.9e-41 139.3 0.0 1.3 1 0 0 1 1 1 1 DXP reductoisomerase C-terminal domain DXP_redisom_C PF08436.12 EME70811.1 - 5.1e-40 135.5 0.1 1e-39 134.5 0.1 1.6 1 0 0 1 1 1 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain DXP_reductoisom PF02670.16 EME70811.1 - 3.7e-39 134.4 2.0 7.3e-39 133.4 2.0 1.5 1 0 0 1 1 1 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase Peptidase_M50 PF02163.22 EME70812.1 - 5.8e-77 258.3 2.2 6.9e-77 258.1 2.2 1.0 1 0 0 1 1 1 1 Peptidase family M50 PDZ_6 PF17820.1 EME70812.1 - 4.2e-12 45.7 0.3 8.7e-12 44.7 0.3 1.6 1 0 0 1 1 1 1 PDZ domain PDZ_2 PF13180.6 EME70812.1 - 4.7e-08 33.3 0.0 9.2e-08 32.3 0.0 1.5 1 0 0 1 1 1 1 PDZ domain PDZ PF00595.24 EME70812.1 - 8.1e-08 32.5 0.0 1.6e-07 31.6 0.0 1.4 1 0 0 1 1 1 1 PDZ domain Tricorn_PDZ PF14685.6 EME70812.1 - 0.0042 17.0 0.0 0.0087 16.0 0.0 1.4 1 0 0 1 1 1 1 Tricorn protease PDZ domain Peptidase_M50B PF13398.6 EME70812.1 - 0.026 14.2 0.6 0.026 14.2 0.6 2.4 3 1 0 3 3 3 0 Peptidase M50B-like POTRA PF07244.15 EME70813.1 - 7.7e-64 212.3 17.8 1.2e-15 57.8 0.5 5.3 5 0 0 5 5 5 5 Surface antigen variable number repeat Bac_surface_Ag PF01103.23 EME70813.1 - 5.8e-63 213.3 6.7 8.1e-63 212.9 6.7 1.2 1 0 0 1 1 1 1 Surface antigen POTRA_1 PF08478.10 EME70813.1 - 1.4e-05 25.3 1.1 5 7.5 0.1 4.7 4 0 0 4 4 4 2 POTRA domain, FtsQ-type OmpH PF03938.14 EME70814.1 - 1.1e-17 64.6 11.7 1.3e-17 64.4 11.7 1.1 1 0 0 1 1 1 1 Outer membrane protein (OmpH-like) SIP1 PF04938.12 EME70814.1 - 0.019 14.7 0.1 0.022 14.5 0.1 1.2 1 0 0 1 1 1 0 Survival motor neuron (SMN) interacting protein 1 (SIP1) SHE3 PF17078.5 EME70814.1 - 0.024 14.3 0.6 0.03 14.0 0.6 1.1 1 0 0 1 1 1 0 SWI5-dependent HO expression protein 3 IL28A PF15177.6 EME70814.1 - 0.081 12.8 1.6 0.15 11.9 1.6 1.4 1 1 0 1 1 1 0 Interleukin-28A Hexapep PF00132.24 EME70815.1 - 1.7e-30 103.5 34.4 2.3e-10 39.8 4.0 6.2 4 1 3 7 7 7 7 Bacterial transferase hexapeptide (six repeats) LpxD PF04613.14 EME70815.1 - 2.4e-18 65.7 0.4 4.4e-18 64.8 0.4 1.5 1 0 0 1 1 1 1 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD Hexapep_2 PF14602.6 EME70815.1 - 1.2e-14 53.8 34.9 2.7e-10 39.8 4.2 5.4 5 0 0 5 5 5 3 Hexapeptide repeat of succinyl-transferase FabA PF07977.13 EME70816.1 - 5.6e-37 126.5 0.1 6.6e-37 126.2 0.1 1.1 1 0 0 1 1 1 1 FabA-like domain 4HBT PF03061.22 EME70816.1 - 1.5e-05 25.2 0.1 2.5e-05 24.5 0.1 1.4 1 0 0 1 1 1 1 Thioesterase superfamily MaoC_dehydratas PF01575.19 EME70816.1 - 0.0049 16.4 0.1 0.0087 15.6 0.0 1.4 1 1 0 1 1 1 1 MaoC like domain Acetyltransf_11 PF13720.6 EME70817.1 - 1.9e-25 89.1 0.0 3e-25 88.5 0.0 1.3 1 0 0 1 1 1 1 Udp N-acetylglucosamine O-acyltransferase; Domain 2 Hexapep PF00132.24 EME70817.1 - 2.7e-23 80.8 11.0 2.7e-08 33.2 0.1 6.1 6 1 0 6 6 6 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 EME70817.1 - 3.3e-06 26.7 6.6 0.25 11.1 0.0 4.9 6 0 0 6 6 6 3 Hexapeptide repeat of succinyl-transferase DUF2407_C PF13373.6 EME70817.1 - 0.064 13.4 0.0 0.11 12.6 0.0 1.3 1 0 0 1 1 1 0 DUF2407 C-terminal domain LpxI_C PF06230.11 EME70818.1 - 3.5e-46 156.3 0.1 5.2e-46 155.8 0.1 1.2 1 0 0 1 1 1 1 LpxI C-terminal domain LpxI_N PF17930.1 EME70818.1 - 4.9e-38 129.9 0.1 7.8e-38 129.3 0.1 1.3 1 0 0 1 1 1 1 LpxI N-terminal domain LpxB PF02684.15 EME70819.1 - 1.3e-93 313.9 0.0 1.5e-93 313.6 0.0 1.0 1 0 0 1 1 1 1 Lipid-A-disaccharide synthetase DUF982 PF06169.12 EME70819.1 - 0.33 11.0 0.1 0.33 11.0 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF982) Glyoxalase PF00903.25 EME70820.1 - 1.6e-23 83.3 0.0 1.9e-23 83.1 0.0 1.0 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 EME70820.1 - 6.7e-12 45.6 0.0 3.1e-11 43.5 0.0 1.8 1 1 1 2 2 2 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 EME70820.1 - 5.5e-07 30.4 0.0 9.7e-07 29.6 0.0 1.4 1 1 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_3 PF13468.6 EME70820.1 - 0.018 15.1 0.0 0.46 10.6 0.0 2.1 1 1 0 1 1 1 0 Glyoxalase-like domain CppA_N PF14506.6 EME70820.1 - 0.051 13.7 0.0 0.071 13.2 0.0 1.3 1 0 0 1 1 1 0 CppA N-terminal Glyoxalase_2 PF12681.7 EME70820.1 - 0.12 12.3 0.0 0.35 10.8 0.0 1.7 1 1 0 1 1 1 0 Glyoxalase-like domain GIDA PF01134.22 EME70821.1 - 9.9e-107 357.4 0.0 1.2e-106 357.1 0.0 1.1 1 0 0 1 1 1 1 Glucose inhibited division protein A DAO PF01266.24 EME70821.1 - 8.4e-05 22.3 0.8 0.0004 20.1 0.8 2.3 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 EME70821.1 - 0.00048 19.4 0.0 0.00082 18.7 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 EME70821.1 - 0.0036 16.4 0.0 0.0036 16.4 0.0 1.6 2 0 0 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.6 EME70821.1 - 0.0069 16.6 0.2 0.018 15.3 0.0 1.8 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.21 EME70821.1 - 0.036 13.3 0.0 0.056 12.7 0.0 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain IU_nuc_hydro PF01156.19 EME70821.1 - 0.048 13.2 0.0 0.077 12.5 0.0 1.2 1 0 0 1 1 1 0 Inosine-uridine preferring nucleoside hydrolase 3HCDH_N PF02737.18 EME70821.1 - 0.075 12.9 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_oxidored PF12831.7 EME70821.1 - 0.18 11.1 0.2 0.22 10.8 0.2 1.2 1 0 0 1 1 1 0 FAD dependent oxidoreductase Ten_N PF06484.12 EME70822.1 - 0.029 14.3 0.0 0.032 14.1 0.0 1.0 1 0 0 1 1 1 0 Teneurin Intracellular Region CD52 PF15116.6 EME70822.1 - 0.16 12.0 0.5 0.16 12.0 0.5 2.2 2 1 0 2 2 2 0 CAMPATH-1 antigen DUF4170 PF13773.6 EME70823.1 - 5.5e-13 48.9 0.0 4e-06 26.9 0.0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF4170) ACBP PF00887.19 EME70823.1 - 0.013 15.7 0.0 5.4 7.3 0.0 2.2 2 0 0 2 2 2 0 Acyl CoA binding protein DUF977 PF06163.11 EME70823.1 - 0.038 13.9 0.0 0.83 9.6 0.0 2.1 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF977) GYF_2 PF14237.6 EME70823.1 - 0.061 13.1 0.0 6.8 6.6 0.0 2.7 2 0 0 2 2 2 0 GYF domain 2 Suc_Fer-like PF06999.12 EME70824.1 - 7.7e-05 22.6 0.0 9.1e-05 22.4 0.0 1.0 1 0 0 1 1 1 1 Sucrase/ferredoxin-like 2Fe-2S_thioredx PF01257.19 EME70824.1 - 0.0028 17.5 0.0 0.0036 17.1 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like [2Fe-2S] ferredoxin DUF1636 PF07845.11 EME70824.1 - 0.058 13.8 0.0 0.062 13.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1636) MTS PF05175.14 EME70826.1 - 6.1e-44 149.5 0.0 1.1e-42 145.4 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_25 PF13649.6 EME70826.1 - 4.1e-06 27.4 0.0 5.5e-05 23.8 0.0 2.5 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 EME70826.1 - 2.4e-05 24.2 0.0 0.00041 20.2 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 EME70826.1 - 0.0029 18.2 0.0 0.13 13.0 0.0 2.7 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 EME70826.1 - 0.0044 16.9 0.0 2.9 7.7 0.0 2.5 2 1 0 2 2 2 2 Methyltransferase domain Methyltransf_12 PF08242.12 EME70826.1 - 0.0086 16.8 0.0 0.04 14.7 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain ADH_zinc_N PF00107.26 EME70826.1 - 0.11 12.5 0.0 0.52 10.3 0.0 2.0 2 0 0 2 2 2 0 Zinc-binding dehydrogenase PseudoU_synth_2 PF00849.22 EME70827.1 - 4.4e-14 52.9 0.0 1.2e-12 48.2 0.0 2.2 1 1 0 1 1 1 1 RNA pseudouridylate synthase S4 PF01479.25 EME70827.1 - 0.0023 17.6 0.0 0.012 15.3 0.1 2.1 2 0 0 2 2 2 1 S4 domain Yippee-Mis18 PF03226.14 EME70828.1 - 0.0054 16.9 0.2 0.012 15.8 0.2 1.7 1 1 0 1 1 1 1 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly zf-NADH-PPase PF09297.11 EME70828.1 - 0.0091 15.6 0.4 0.0091 15.6 0.4 1.9 2 0 0 2 2 2 1 NADH pyrophosphatase zinc ribbon domain GFA PF04828.14 EME70828.1 - 0.089 13.1 0.1 1.7 9.0 0.0 2.2 2 0 0 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme UPF0114 PF03350.16 EME70829.1 - 6e-39 132.9 3.6 6e-39 132.9 3.6 1.5 2 0 0 2 2 2 1 Uncharacterized protein family, UPF0114 PPK2 PF03976.14 EME70830.1 - 1e-103 345.8 0.6 1.2e-103 345.5 0.6 1.1 1 0 0 1 1 1 1 Polyphosphate kinase 2 (PPK2) Rotamase_3 PF13616.6 EME70831.1 - 2.1e-30 105.6 0.0 2.3e-30 105.5 0.0 1.0 1 0 0 1 1 1 1 PPIC-type PPIASE domain Rotamase PF00639.21 EME70831.1 - 1.2e-29 103.1 0.0 1.3e-29 103.0 0.0 1.0 1 0 0 1 1 1 1 PPIC-type PPIASE domain Rotamase_2 PF13145.6 EME70831.1 - 2.9e-07 31.3 0.0 3.3e-07 31.1 0.0 1.1 1 0 0 1 1 1 1 PPIC-type PPIASE domain SpoU_methylase PF00588.19 EME70832.1 - 3.6e-33 114.7 0.0 5e-33 114.3 0.0 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family SpoU_sub_bind PF08032.12 EME70832.1 - 7.4e-06 26.2 0.0 1.5e-05 25.2 0.0 1.5 1 0 0 1 1 1 1 RNA 2'-O ribose methyltransferase substrate binding PseudoU_synth_2 PF00849.22 EME70833.1 - 1e-18 67.9 0.0 5.4e-18 65.6 0.0 1.9 1 1 0 1 1 1 1 RNA pseudouridylate synthase Aminotran_3 PF00202.21 EME70834.1 - 1.8e-119 399.0 0.0 2.2e-119 398.7 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III GntR PF00392.21 EME70834.1 - 0.14 11.8 0.2 24 4.7 0.3 2.5 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family Arginase PF00491.21 EME70835.1 - 4e-50 170.9 0.0 4.9e-50 170.6 0.0 1.0 1 0 0 1 1 1 1 Arginase family Type2_restr_D3 PF16902.5 EME70836.1 - 0.059 13.3 0.1 0.07 13.1 0.1 1.1 1 0 0 1 1 1 0 Type-2 restriction enzyme D3 domain OmpA PF00691.20 EME70837.1 - 1.7e-14 53.9 0.1 2.4e-14 53.5 0.1 1.2 1 0 0 1 1 1 1 OmpA family UvrA_DNA-bind PF17755.1 EME70838.1 - 8.4e-41 138.8 0.0 4.5e-39 133.2 0.0 2.6 2 0 0 2 2 2 1 UvrA DNA-binding domain UvrA_inter PF17760.1 EME70838.1 - 3.9e-37 126.7 0.0 8.1e-37 125.6 0.0 1.6 1 0 0 1 1 1 1 UvrA interaction domain ABC_tran PF00005.27 EME70838.1 - 4e-20 72.7 0.1 3.9e-05 24.2 0.0 4.3 4 0 0 4 4 4 4 ABC transporter SMC_N PF02463.19 EME70838.1 - 1.1e-08 34.9 0.0 0.026 14.0 0.0 3.9 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 EME70838.1 - 8.2e-07 29.6 0.1 0.063 13.7 0.0 3.3 4 0 0 4 4 4 2 AAA ATPase domain AAA_29 PF13555.6 EME70838.1 - 4.1e-06 26.4 0.3 0.1 12.4 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_25 PF13481.6 EME70838.1 - 3.8e-05 23.4 0.1 0.46 10.0 0.0 2.9 3 0 0 3 3 3 2 AAA domain RsgA_GTPase PF03193.16 EME70838.1 - 0.00034 20.5 0.1 0.51 10.2 0.0 2.4 2 0 0 2 2 2 2 RsgA GTPase AAA_23 PF13476.6 EME70838.1 - 0.00046 20.8 0.1 0.1 13.1 0.0 2.5 2 0 0 2 2 2 1 AAA domain DnaJ_CXXCXGXG PF00684.19 EME70838.1 - 0.00069 19.9 2.6 0.036 14.4 0.4 3.2 3 0 0 3 3 3 1 DnaJ central domain BCA_ABC_TP_C PF12399.8 EME70838.1 - 0.00089 19.1 1.2 0.047 13.6 0.1 2.7 2 0 0 2 2 2 1 Branched-chain amino acid ATP-binding cassette transporter AAA_22 PF13401.6 EME70838.1 - 0.0035 17.6 0.7 3 8.1 0.0 3.2 4 0 0 4 4 4 1 AAA domain AAA_21 PF13304.6 EME70838.1 - 0.0048 16.8 8.0 0.012 15.4 0.0 3.7 4 0 0 4 4 4 1 AAA domain, putative AbiEii toxin, Type IV TA system ATPase PF06745.13 EME70838.1 - 0.0075 15.6 0.0 3.9 6.7 0.0 2.6 2 0 0 2 2 2 2 KaiC APS_kinase PF01583.20 EME70838.1 - 0.0078 16.1 0.6 1.3 8.9 0.0 3.1 3 0 0 3 3 3 1 Adenylylsulphate kinase AAA_18 PF13238.6 EME70838.1 - 0.0088 16.6 0.0 5.5 7.6 0.0 2.9 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 EME70838.1 - 0.018 15.2 0.0 3.4 7.8 0.0 3.0 3 0 0 3 3 3 0 AAA domain DUF2075 PF09848.9 EME70838.1 - 0.026 13.8 0.0 3 7.0 0.0 2.3 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_14 PF13173.6 EME70838.1 - 0.028 14.4 0.0 3.3 7.8 0.0 2.9 3 0 0 3 3 3 0 AAA domain NACHT PF05729.12 EME70838.1 - 0.091 12.7 0.1 13 5.6 0.0 2.4 2 0 0 2 2 2 0 NACHT domain cobW PF02492.19 EME70838.1 - 0.19 11.3 1.2 12 5.4 0.4 2.4 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_15 PF13175.6 EME70838.1 - 0.19 11.4 0.7 13 5.3 0.0 3.2 4 0 0 4 4 4 0 AAA ATPase domain Anti-TRAP PF15777.5 EME70838.1 - 0.72 9.9 3.8 8.4 6.4 0.3 3.3 3 0 0 3 3 3 0 Tryptophan RNA-binding attenuator protein inhibitory protein UPF0016 PF01169.19 EME70839.1 - 1.9e-41 140.3 21.1 2.5e-21 75.8 4.5 2.1 2 0 0 2 2 2 2 Uncharacterized protein family UPF0016 TauE PF01925.19 EME70839.1 - 0.0071 16.0 13.0 0.016 14.9 1.3 2.3 1 1 1 2 2 2 2 Sulfite exporter TauE/SafE Helicase_C PF00271.31 EME70840.1 - 1.5e-19 70.4 0.0 3.9e-16 59.4 0.0 2.3 2 0 0 2 2 2 2 Helicase conserved C-terminal domain DEAD PF00270.29 EME70840.1 - 6e-16 58.7 0.1 3.3e-15 56.3 0.1 2.0 2 0 0 2 2 2 1 DEAD/DEAH box helicase ResIII PF04851.15 EME70840.1 - 0.00012 22.2 0.0 0.0002 21.4 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit tRNA_anti-codon PF01336.25 EME70840.1 - 0.00019 21.3 0.0 0.00039 20.3 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain RecG_wedge PF17191.4 EME70840.1 - 0.00025 20.7 0.0 0.00039 20.1 0.0 1.3 1 0 0 1 1 1 1 RecG wedge domain SecA_DEAD PF07517.14 EME70840.1 - 0.018 14.4 0.0 0.029 13.7 0.0 1.3 1 0 0 1 1 1 0 SecA DEAD-like domain AAA_30 PF13604.6 EME70840.1 - 0.096 12.4 2.4 0.63 9.7 2.4 2.2 1 1 0 1 1 1 0 AAA domain IMS_HHH PF11798.8 EME70840.1 - 0.18 12.2 0.1 1.3 9.5 0.0 2.4 2 0 0 2 2 2 0 IMS family HHH motif Sdh5 PF03937.16 EME70841.1 - 2.7e-21 75.3 0.0 3.2e-21 75.1 0.0 1.1 1 0 0 1 1 1 1 Flavinator of succinate dehydrogenase TRCF PF03461.15 EME70842.1 - 6.7e-26 90.5 0.0 5.1e-25 87.7 0.0 2.2 2 0 0 2 2 2 1 TRCF domain CarD_CdnL_TRCF PF02559.16 EME70842.1 - 5.9e-24 84.6 0.0 1.5e-23 83.3 0.0 1.8 1 0 0 1 1 1 1 CarD-like/TRCF domain UvrB_inter PF17757.1 EME70842.1 - 4e-18 65.4 0.0 7.7e-18 64.5 0.0 1.5 1 0 0 1 1 1 1 UvrB interaction domain Helicase_C PF00271.31 EME70842.1 - 5.8e-17 62.0 0.0 2.7e-15 56.7 0.0 2.6 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.29 EME70842.1 - 3.7e-16 59.4 0.2 1e-15 57.9 0.1 1.9 2 0 0 2 2 2 1 DEAD/DEAH box helicase ResIII PF04851.15 EME70842.1 - 4.2e-06 26.9 0.0 1.1e-05 25.5 0.0 1.7 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit UB2H PF14814.6 EME70842.1 - 0.0081 16.2 0.0 0.024 14.6 0.0 1.8 1 1 0 1 1 1 1 Bifunctional transglycosylase second domain AAA_22 PF13401.6 EME70842.1 - 0.034 14.4 0.7 2.3 8.5 0.2 3.4 3 1 0 3 3 3 0 AAA domain AAA_16 PF13191.6 EME70842.1 - 0.047 14.1 0.2 0.21 12.0 0.0 2.2 2 0 0 2 2 2 0 AAA ATPase domain SecA_DEAD PF07517.14 EME70842.1 - 0.075 12.3 0.1 0.13 11.6 0.1 1.2 1 0 0 1 1 1 0 SecA DEAD-like domain NitrOD2 PF18550.1 EME70842.1 - 0.16 12.1 0.0 0.36 11.0 0.0 1.6 1 0 0 1 1 1 0 Nitrososphaera output domain 2 Aminotran_5 PF00266.19 EME70843.1 - 2.2e-25 89.4 0.0 2.8e-25 89.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V adh_short PF00106.25 EME70844.1 - 1.7e-51 174.4 0.1 2.3e-51 174.1 0.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 EME70844.1 - 4e-35 121.5 0.9 5e-35 121.2 0.9 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 EME70844.1 - 1.1e-11 44.9 0.3 1.4e-11 44.6 0.3 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 EME70844.1 - 3e-05 23.6 0.8 6.9e-05 22.4 0.1 2.0 2 1 0 2 2 2 1 NAD dependent epimerase/dehydratase family Sacchrp_dh_NADP PF03435.18 EME70844.1 - 0.0025 18.1 0.1 0.0043 17.3 0.1 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain F420_oxidored PF03807.17 EME70844.1 - 0.005 17.4 0.2 0.011 16.3 0.2 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Polysacc_synt_2 PF02719.15 EME70844.1 - 0.016 14.4 0.0 0.026 13.7 0.0 1.4 1 1 0 1 1 1 0 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 EME70844.1 - 0.072 12.2 0.1 0.14 11.2 0.1 1.5 1 0 0 1 1 1 0 RmlD substrate binding domain NmrA PF05368.13 EME70844.1 - 0.17 11.4 0.3 1.6 8.2 0.3 2.0 2 0 0 2 2 2 0 NmrA-like family Cpn60_TCP1 PF00118.24 EME70844.1 - 0.22 10.1 0.1 0.36 9.4 0.1 1.3 1 0 0 1 1 1 0 TCP-1/cpn60 chaperonin family MazG PF03819.17 EME70846.1 - 4.3e-44 148.6 0.4 6.3e-28 96.8 0.0 2.2 2 0 0 2 2 2 2 MazG nucleotide pyrophosphohydrolase domain PRA-PH PF01503.17 EME70846.1 - 1.1e-11 45.0 0.4 4.9e-05 23.7 0.1 2.5 2 0 0 2 2 2 2 Phosphoribosyl-ATP pyrophosphohydrolase MazG-like PF12643.7 EME70846.1 - 2e-06 27.9 0.2 0.0014 18.8 0.0 2.8 2 1 0 2 2 2 2 MazG-like family HAMP PF00672.25 EME70846.1 - 0.003 17.9 0.6 11 6.5 0.2 3.5 2 1 1 3 3 3 1 HAMP domain Csd3_N PF18059.1 EME70846.1 - 0.01 16.4 0.0 0.031 14.8 0.0 1.8 2 0 0 2 2 2 0 Csd3 N-terminal DUF4088 PF13317.6 EME70846.1 - 0.017 14.7 0.2 0.1 12.1 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF4088) Tropomyosin PF00261.20 EME70846.1 - 0.095 12.0 2.5 0.18 11.1 2.5 1.5 1 0 0 1 1 1 0 Tropomyosin BshC PF10079.9 EME70846.1 - 0.19 10.5 0.2 0.25 10.0 0.2 1.1 1 0 0 1 1 1 0 Bacillithiol biosynthesis BshC Fe_dep_repr_C PF02742.15 EME70846.1 - 0.51 10.5 3.4 8.8 6.5 0.1 3.7 4 0 0 4 4 4 0 Iron dependent repressor, metal binding and dimerisation domain Cytochrom_C_2 PF01322.20 EME70846.1 - 1.6 9.7 7.8 31 5.5 0.4 3.7 3 1 1 4 4 4 0 Cytochrome C' Remorin_C PF03763.13 EME70846.1 - 2.4 8.0 7.0 16 5.5 1.2 3.1 3 0 0 3 3 3 0 Remorin, C-terminal region Transglut_core PF01841.19 EME70847.1 - 5.2e-17 62.3 0.6 7.2e-17 61.9 0.1 1.5 2 0 0 2 2 2 1 Transglutaminase-like superfamily Lactamase_B_2 PF12706.7 EME70849.1 - 2.3e-38 131.7 1.8 2.8e-38 131.5 1.8 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 EME70849.1 - 6.2e-12 45.9 4.2 7.9e-12 45.6 3.0 1.8 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 EME70849.1 - 8.3e-05 22.5 0.1 0.00013 21.9 0.1 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain TatD_DNase PF01026.21 EME70850.1 - 3.1e-79 266.0 0.0 3.4e-79 265.8 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase tRNA-synt_1g PF09334.11 EME70851.1 - 2e-111 372.5 0.0 1.2e-109 366.6 0.0 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (M) tRNA-synt_1 PF00133.22 EME70851.1 - 2.4e-29 102.1 0.2 1.2e-15 56.8 0.0 3.1 2 1 1 3 3 3 3 tRNA synthetases class I (I, L, M and V) tRNA-synt_1e PF01406.19 EME70851.1 - 8.3e-14 51.6 0.0 1.5e-07 31.1 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain Anticodon_1 PF08264.13 EME70851.1 - 9e-05 22.5 0.0 0.00018 21.5 0.0 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1f PF01921.18 EME70851.1 - 0.043 12.7 0.0 0.15 11.0 0.0 1.7 2 0 0 2 2 2 0 tRNA synthetases class I (K) DNA_pol3_delta2 PF13177.6 EME70852.1 - 1.3e-35 122.6 0.0 2.4e-35 121.7 0.0 1.4 1 1 0 1 1 1 1 DNA polymerase III, delta subunit AAA PF00004.29 EME70852.1 - 1e-05 26.0 0.1 0.0001 22.7 0.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 EME70852.1 - 0.0016 18.8 0.1 0.025 15.0 0.0 2.4 1 1 1 2 2 2 1 AAA ATPase domain AAA_5 PF07728.14 EME70852.1 - 0.0061 16.6 0.2 1.3 9.0 0.1 2.3 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) NACHT PF05729.12 EME70852.1 - 0.022 14.7 0.1 0.13 12.1 0.1 2.1 1 1 0 1 1 1 0 NACHT domain AAA_25 PF13481.6 EME70852.1 - 0.042 13.4 1.7 0.29 10.7 1.7 2.2 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 EME70852.1 - 0.076 13.3 0.1 0.33 11.2 0.0 2.1 2 1 0 2 2 2 0 AAA domain AAA_24 PF13479.6 EME70852.1 - 0.079 12.7 0.0 0.25 11.0 0.0 1.8 1 1 0 1 1 1 0 AAA domain Thymidylate_kin PF02223.17 EME70853.1 - 1.4e-46 158.5 0.0 1.6e-46 158.4 0.0 1.0 1 0 0 1 1 1 1 Thymidylate kinase AAA_28 PF13521.6 EME70853.1 - 1.9e-06 28.2 0.0 2.4e-06 27.9 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 EME70853.1 - 0.0045 17.4 0.1 0.064 13.6 0.1 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.6 EME70853.1 - 0.013 15.7 0.0 0.022 14.9 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 EME70853.1 - 0.075 13.3 0.0 0.13 12.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain Methyltransf_24 PF13578.6 EME70853.1 - 0.077 14.0 0.3 31 5.6 0.0 2.9 2 1 0 2 2 2 0 Methyltransferase domain Peptidase_S11 PF00768.20 EME70854.1 - 2.5e-60 203.9 0.0 3.5e-60 203.4 0.0 1.1 1 0 0 1 1 1 1 D-alanyl-D-alanine carboxypeptidase PBP5_C PF07943.13 EME70854.1 - 3.8e-15 55.9 0.0 6.2e-15 55.2 0.0 1.4 1 0 0 1 1 1 1 Penicillin-binding protein 5, C-terminal domain Beta-lactamase2 PF13354.6 EME70854.1 - 3.1e-07 30.2 0.0 4.5e-07 29.7 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase enzyme family Peptidase_S13 PF02113.15 EME70854.1 - 0.00026 19.8 0.1 0.0004 19.2 0.1 1.2 1 0 0 1 1 1 1 D-Ala-D-Ala carboxypeptidase 3 (S13) family DPBB_1 PF03330.18 EME70855.1 - 7.3e-25 87.1 0.0 1.8e-24 85.8 0.0 1.7 1 0 0 1 1 1 1 Lytic transglycolase SPOR PF05036.13 EME70855.1 - 3.7e-12 46.4 0.2 1.1e-11 44.9 0.1 1.8 2 0 0 2 2 2 1 Sporulation related domain SLT_2 PF13406.6 EME70856.1 - 1.9e-109 365.4 0.0 2.2e-109 365.2 0.0 1.0 1 0 0 1 1 1 1 Transglycosylase SLT domain Glucosaminidase PF01832.20 EME70856.1 - 0.0097 16.4 0.0 0.019 15.5 0.0 1.6 1 1 0 1 1 1 1 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SLT PF01464.20 EME70856.1 - 0.069 12.8 0.0 0.16 11.6 0.0 1.6 1 1 0 1 1 1 0 Transglycosylase SLT domain DUF218 PF02698.17 EME70857.1 - 1.6e-22 79.9 0.0 2.1e-22 79.6 0.0 1.2 1 0 0 1 1 1 1 DUF218 domain Aldo_ket_red PF00248.21 EME70858.1 - 1.5e-25 90.0 0.0 4.7e-23 81.8 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family ABC_tran PF00005.27 EME70859.1 - 1.1e-28 100.5 0.0 1.4e-28 100.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 EME70859.1 - 1.1e-11 45.2 0.1 6.1e-06 26.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 EME70859.1 - 2e-05 24.2 0.3 0.0025 17.3 0.1 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 EME70859.1 - 3.6e-05 24.4 0.0 4.6e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 EME70859.1 - 0.00091 19.0 0.1 0.0019 18.0 0.0 1.4 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 EME70859.1 - 0.0015 18.3 0.1 0.0027 17.4 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 EME70859.1 - 0.003 17.9 0.0 0.0046 17.3 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain MMR_HSR1 PF01926.23 EME70859.1 - 0.016 15.3 0.0 0.033 14.3 0.0 1.6 2 0 0 2 2 2 0 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 EME70859.1 - 0.016 15.1 0.0 0.026 14.4 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_22 PF13401.6 EME70859.1 - 0.017 15.4 0.1 0.074 13.3 0.1 1.9 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 EME70859.1 - 0.018 15.3 0.1 0.57 10.5 0.1 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_13 PF13166.6 EME70859.1 - 0.021 13.5 0.0 0.039 12.6 0.0 1.4 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 EME70859.1 - 0.032 14.5 0.0 0.047 13.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF3584 PF12128.8 EME70859.1 - 0.035 11.6 0.1 0.046 11.2 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Zeta_toxin PF06414.12 EME70859.1 - 0.037 13.3 0.1 0.073 12.3 0.1 1.4 1 0 0 1 1 1 0 Zeta toxin BCA_ABC_TP_C PF12399.8 EME70859.1 - 0.039 13.9 0.0 0.07 13.1 0.0 1.5 1 0 0 1 1 1 0 Branched-chain amino acid ATP-binding cassette transporter AAA_27 PF13514.6 EME70859.1 - 0.052 13.1 0.1 0.13 11.8 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 EME70859.1 - 0.065 13.7 0.0 0.093 13.2 0.0 1.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) TniB PF05621.11 EME70859.1 - 0.08 12.3 0.1 3.9 6.8 0.0 2.1 2 0 0 2 2 2 0 Bacterial TniB protein ABC_ATPase PF09818.9 EME70859.1 - 0.13 11.1 1.9 0.1 11.4 0.5 1.4 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_30 PF13604.6 EME70859.1 - 0.14 11.8 2.6 0.49 10.1 2.6 2.0 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.27 EME70860.1 - 4.6e-25 88.7 0.0 5.8e-25 88.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.8 EME70860.1 - 2.8e-08 33.5 0.0 5.9e-08 32.5 0.0 1.6 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_25 PF13481.6 EME70860.1 - 1.1e-06 28.3 2.8 0.0014 18.3 0.4 2.2 2 0 0 2 2 2 2 AAA domain AAA_21 PF13304.6 EME70860.1 - 2.5e-06 27.5 0.1 0.00059 19.7 0.0 2.1 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 EME70860.1 - 1.3e-05 25.5 0.3 0.00051 20.3 0.3 2.2 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 EME70860.1 - 2.7e-05 24.8 0.0 3.7e-05 24.3 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 EME70860.1 - 0.00079 19.2 0.0 0.0011 18.8 0.0 1.1 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 EME70860.1 - 0.0013 18.4 0.0 0.0024 17.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 EME70860.1 - 0.002 17.6 0.1 0.071 12.5 0.1 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA PF00004.29 EME70860.1 - 0.0036 17.7 0.0 0.18 12.2 0.0 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 EME70860.1 - 0.0036 17.0 0.5 0.007 16.1 0.3 1.8 1 1 0 1 1 1 1 AAA domain SRP54 PF00448.22 EME70860.1 - 0.029 14.0 0.0 0.052 13.2 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_16 PF13191.6 EME70860.1 - 0.037 14.4 0.3 0.065 13.6 0.2 1.7 1 1 0 1 1 1 0 AAA ATPase domain Zeta_toxin PF06414.12 EME70860.1 - 0.047 13.0 0.0 0.09 12.0 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin FeoB_N PF02421.18 EME70860.1 - 0.05 13.1 0.9 0.21 11.1 0.1 2.0 2 0 0 2 2 2 0 Ferrous iron transport protein B RsgA_GTPase PF03193.16 EME70860.1 - 0.051 13.5 0.1 0.088 12.7 0.1 1.3 1 0 0 1 1 1 0 RsgA GTPase TniB PF05621.11 EME70860.1 - 0.085 12.3 0.3 1 8.8 0.1 2.1 2 0 0 2 2 2 0 Bacterial TniB protein MMR_HSR1 PF01926.23 EME70860.1 - 0.13 12.4 0.1 0.67 10.1 0.0 2.0 2 1 0 2 2 2 0 50S ribosome-binding GTPase AAA_33 PF13671.6 EME70860.1 - 0.14 12.3 0.3 0.32 11.1 0.3 2.0 1 1 0 1 1 1 0 AAA domain TsaE PF02367.17 EME70860.1 - 0.14 12.2 0.1 0.31 11.0 0.0 1.6 2 0 0 2 2 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE MukB PF04310.12 EME70860.1 - 0.18 11.6 0.1 0.29 10.9 0.1 1.3 1 0 0 1 1 1 0 MukB N-terminal ATP-synt_ab PF00006.25 EME70860.1 - 0.27 10.9 1.1 0.32 10.6 1.1 1.3 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain BPD_transp_2 PF02653.16 EME70861.1 - 4.8e-32 111.2 37.4 8.3e-32 110.4 37.4 1.4 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 EME70862.1 - 3.8e-36 124.6 38.8 4.4e-36 124.4 38.8 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Peripla_BP_6 PF13458.6 EME70863.1 - 4.2e-42 145.0 2.8 5e-42 144.8 2.8 1.0 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 EME70863.1 - 4.5e-07 29.2 0.0 0.00053 19.1 0.0 2.3 2 1 0 2 2 2 2 Periplasmic binding protein domain ANF_receptor PF01094.28 EME70863.1 - 2e-06 27.2 0.0 5e-06 25.8 0.0 1.5 1 1 0 1 1 1 1 Receptor family ligand binding region LppC PF04348.13 EME70863.1 - 1.1e-05 24.5 0.1 1.3e-05 24.2 0.1 1.2 1 0 0 1 1 1 1 LppC putative lipoprotein TAT_signal PF10518.9 EME70863.1 - 0.012 15.4 7.8 0.012 15.4 7.8 2.4 3 0 0 3 3 3 0 TAT (twin-arginine translocation) pathway signal sequence baeRF_family11 PF18855.1 EME70863.1 - 0.053 13.8 0.0 0.11 12.8 0.0 1.4 1 0 0 1 1 1 0 Bacterial archaeo-eukaryotic release factor family 11 UCR_Fe-S_N PF10399.9 EME70863.1 - 1.9 7.9 7.3 0.11 11.9 1.2 2.0 2 0 0 2 2 2 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal GGDEF PF00990.21 EME70864.1 - 4.1e-17 62.4 0.0 5.8e-17 61.9 0.0 1.2 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain Response_reg PF00072.24 EME70864.1 - 0.00093 19.3 0.0 0.082 13.1 0.1 2.7 2 0 0 2 2 2 1 Response regulator receiver domain OKR_DC_1_N PF03709.15 EME70864.1 - 0.025 14.9 0.0 0.99 9.7 0.0 2.5 2 0 0 2 2 2 0 Orn/Lys/Arg decarboxylase, N-terminal domain DSBA PF01323.20 EME70865.1 - 3.9e-39 134.4 0.0 4.4e-39 134.3 0.0 1.0 1 0 0 1 1 1 1 DSBA-like thioredoxin domain Thioredoxin_4 PF13462.6 EME70865.1 - 0.00046 20.4 0.0 0.0013 18.9 0.0 1.7 2 0 0 2 2 2 1 Thioredoxin Thioredoxin_3 PF13192.6 EME70865.1 - 0.003 17.6 0.0 0.046 13.8 0.0 2.6 3 0 0 3 3 3 1 Thioredoxin domain EamA PF00892.20 EME70866.1 - 1.1e-23 83.9 37.4 5.9e-12 45.9 17.7 2.0 2 0 0 2 2 2 2 EamA-like transporter family BON PF04972.17 EME70868.1 - 1.4e-10 41.3 2.3 4.3e-07 30.1 1.0 2.5 2 1 0 2 2 2 2 BON domain SPOR PF05036.13 EME70868.1 - 0.0081 16.5 0.2 0.096 13.1 0.1 2.2 2 0 0 2 2 2 1 Sporulation related domain DUF1471 PF07338.13 EME70868.1 - 0.033 14.1 0.0 0.085 12.8 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1471) HTH_11 PF08279.12 EME70869.1 - 0.00013 21.8 0.0 0.00027 20.8 0.0 1.5 1 0 0 1 1 1 1 HTH domain Sigma70_r4 PF04545.16 EME70869.1 - 0.00046 19.7 0.6 0.0073 15.8 0.0 2.8 3 1 0 3 3 3 1 Sigma-70, region 4 HTH_23 PF13384.6 EME70869.1 - 0.0033 17.2 0.4 0.018 14.8 0.0 2.5 2 0 0 2 2 2 1 Homeodomain-like domain HTH_10 PF04967.12 EME70869.1 - 0.0065 16.2 0.0 0.013 15.3 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain HTH_38 PF13936.6 EME70869.1 - 0.069 12.9 0.1 0.74 9.6 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 EME70869.1 - 0.073 12.8 0.2 0.77 9.5 0.0 2.5 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_24 PF13412.6 EME70869.1 - 0.12 11.9 2.0 0.13 11.9 0.0 2.1 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 EME70869.1 - 0.2 11.5 0.0 0.2 11.5 0.0 2.8 3 0 0 3 3 3 0 AsnC-type helix-turn-helix domain Trypsin_2 PF13365.6 EME70870.1 - 5.1e-22 79.4 0.1 6.9e-22 79.0 0.1 1.2 1 0 0 1 1 1 1 Trypsin-like peptidase domain Trypsin PF00089.26 EME70870.1 - 2.3e-10 40.7 0.0 3.8e-10 39.9 0.0 1.3 1 0 0 1 1 1 1 Trypsin Peptidase_S46 PF10459.9 EME70870.1 - 0.0072 15.0 0.2 0.01 14.5 0.2 1.1 1 0 0 1 1 1 1 Peptidase S46 DUF4384 PF14326.6 EME70871.1 - 2.6e-07 30.6 0.0 3.2e-06 27.2 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF4384) TPR_16 PF13432.6 EME70872.1 - 4e-05 24.2 6.3 4e-05 24.2 6.3 6.1 3 1 3 6 6 6 3 Tetratricopeptide repeat TPR_19 PF14559.6 EME70872.1 - 0.00012 22.5 18.5 0.00098 19.6 4.5 4.1 2 1 0 2 2 2 1 Tetratricopeptide repeat TPR_2 PF07719.17 EME70872.1 - 0.00026 20.9 22.7 0.68 10.2 0.0 5.6 4 1 1 5 5 5 3 Tetratricopeptide repeat TPR_17 PF13431.6 EME70872.1 - 0.00029 21.0 11.5 1 9.9 0.1 5.0 4 1 0 4 4 4 2 Tetratricopeptide repeat TPR_1 PF00515.28 EME70872.1 - 0.00062 19.5 12.2 2.9 7.9 0.0 4.7 4 1 1 5 5 5 3 Tetratricopeptide repeat TPR_11 PF13414.6 EME70872.1 - 0.0021 17.7 18.5 0.17 11.6 1.0 4.6 3 1 1 4 4 4 3 TPR repeat HEPN PF05168.14 EME70872.1 - 0.0077 16.4 1.1 0.029 14.5 0.9 2.0 2 0 0 2 2 2 1 HEPN domain DUF799 PF05643.11 EME70872.1 - 0.012 15.2 0.0 0.023 14.3 0.0 1.4 1 0 0 1 1 1 0 Putative bacterial lipoprotein (DUF799) TPR_8 PF13181.6 EME70872.1 - 0.034 14.4 11.5 3.5 8.1 0.4 4.9 5 0 0 5 5 5 0 Tetratricopeptide repeat TPR_12 PF13424.6 EME70872.1 - 0.061 13.6 19.4 0.15 12.4 1.8 4.0 2 1 0 3 3 3 0 Tetratricopeptide repeat TPR_6 PF13174.6 EME70872.1 - 0.46 11.2 15.9 0.75 10.6 0.5 5.4 4 1 1 5 5 5 0 Tetratricopeptide repeat TPR_14 PF13428.6 EME70872.1 - 4.3 8.4 30.9 0.91 10.5 5.1 6.0 2 1 3 5 5 5 0 Tetratricopeptide repeat LPP20 PF02169.16 EME70873.1 - 0.12 12.8 0.0 0.12 12.8 0.0 2.1 3 0 0 3 3 3 0 LPP20 lipoprotein KdpC PF02669.15 EME70873.1 - 0.24 11.2 1.7 1.5 8.6 0.2 2.1 1 1 1 2 2 2 0 K+-transporting ATPase, c chain Peptidase_C14 PF00656.22 EME70874.1 - 3.1e-09 37.2 0.0 4.7e-09 36.6 0.0 1.3 1 0 0 1 1 1 1 Caspase domain EF-hand_1 PF00036.32 EME70874.1 - 0.016 14.7 0.1 0.035 13.7 0.1 1.6 1 0 0 1 1 1 0 EF hand Peptidase_C14 PF00656.22 EME70876.1 - 1.2e-09 38.5 0.0 2.4e-09 37.5 0.0 1.5 2 0 0 2 2 2 1 Caspase domain EF-hand_1 PF00036.32 EME70876.1 - 0.0066 15.9 0.0 0.016 14.8 0.0 1.7 1 0 0 1 1 1 1 EF hand EF-hand_7 PF13499.6 EME70876.1 - 0.079 13.4 0.0 0.2 12.1 0.0 1.7 1 0 0 1 1 1 0 EF-hand domain pair LUC7 PF03194.15 EME70877.1 - 0.015 15.0 3.3 0.022 14.4 3.3 1.2 1 0 0 1 1 1 0 LUC7 N_terminus GOLGA2L5 PF15070.6 EME70878.1 - 0.018 13.7 0.1 0.025 13.2 0.1 1.1 1 0 0 1 1 1 0 Putative golgin subfamily A member 2-like protein 5 TPR_16 PF13432.6 EME70878.1 - 0.049 14.3 15.2 0.049 14.3 15.2 3.3 3 0 0 3 3 3 0 Tetratricopeptide repeat EAL PF00563.20 EME70879.1 - 1.6e-71 240.6 0.0 3e-71 239.7 0.0 1.5 1 0 0 1 1 1 1 EAL domain GGDEF PF00990.21 EME70879.1 - 1.3e-52 177.8 0.1 3.7e-52 176.3 0.1 1.8 2 0 0 2 2 2 1 Diguanylate cyclase, GGDEF domain Response_reg PF00072.24 EME70879.1 - 3.3e-20 72.3 0.0 8.7e-20 71.0 0.0 1.8 1 0 0 1 1 1 1 Response regulator receiver domain PAS_3 PF08447.12 EME70879.1 - 1.3e-17 63.9 0.0 2.6e-10 40.4 0.0 2.6 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 EME70879.1 - 2.6e-15 56.6 0.0 9.8e-14 51.5 0.0 2.6 2 0 0 2 2 2 1 PAS domain PAS_4 PF08448.10 EME70879.1 - 9.2e-13 48.4 3.0 8.4e-11 42.1 0.2 3.5 3 0 0 3 3 3 1 PAS fold PAS_8 PF13188.7 EME70879.1 - 7.8e-08 32.2 0.1 3.7e-07 30.0 0.1 2.1 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 EME70879.1 - 2.1e-07 30.9 0.0 1.7e-05 24.8 0.0 2.7 3 0 0 3 3 3 1 PAS fold B12-binding PF02310.19 EME70879.1 - 0.021 14.8 0.0 0.14 12.2 0.0 2.5 1 0 0 1 1 1 0 B12 binding domain PAS_7 PF12860.7 EME70879.1 - 0.087 13.0 0.0 2.3 8.4 0.0 2.9 2 0 0 2 2 2 0 PAS fold GRAS PF03514.14 EME70879.1 - 0.16 10.9 0.0 0.29 10.0 0.0 1.3 1 0 0 1 1 1 0 GRAS domain family HisKA_2 PF07568.12 EME70880.1 - 1.6e-27 95.4 5.6 3e-27 94.5 0.2 2.9 3 0 0 3 3 3 1 Histidine kinase PAS PF00989.25 EME70880.1 - 1.5e-14 53.9 0.0 3.5e-14 52.8 0.0 1.6 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.7 EME70880.1 - 3.2e-14 53.0 0.0 1.6e-13 50.8 0.0 2.1 2 0 0 2 2 2 1 PAS domain PAS_8 PF13188.7 EME70880.1 - 2.1e-11 43.6 0.0 5.1e-11 42.3 0.0 1.7 1 0 0 1 1 1 1 PAS domain HATPase_c PF02518.26 EME70880.1 - 1.1e-09 38.8 0.2 5.9e-09 36.4 0.0 2.3 2 1 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 EME70880.1 - 1.2e-06 28.7 0.0 2.5e-06 27.7 0.0 1.6 1 0 0 1 1 1 1 PAS fold HATPase_c_2 PF13581.6 EME70880.1 - 1.4e-05 25.1 0.0 2.9e-05 24.0 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HWE_HK PF07536.14 EME70880.1 - 1.4e-05 25.7 0.1 3.7e-05 24.3 0.1 1.8 1 0 0 1 1 1 1 HWE histidine kinase PAS_3 PF08447.12 EME70880.1 - 0.0036 17.5 0.0 0.013 15.8 0.0 2.0 1 1 0 1 1 1 1 PAS fold GntR PF00392.21 EME70881.1 - 1.4e-13 50.3 0.0 2.5e-13 49.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family FCD PF07729.12 EME70881.1 - 9.8e-09 35.7 1.5 2.3e-08 34.5 1.5 1.6 1 1 0 1 1 1 1 FCD domain SOG2 PF10428.9 EME70881.1 - 0.03 13.5 0.0 0.039 13.1 0.0 1.1 1 0 0 1 1 1 0 RAM signalling pathway protein TPR_1 PF00515.28 EME70882.1 - 2e-27 93.9 11.8 1.7e-09 37.1 0.0 7.9 9 0 0 9 9 9 5 Tetratricopeptide repeat TPR_2 PF07719.17 EME70882.1 - 5.6e-27 91.7 23.5 2.6e-08 33.4 0.0 7.9 9 0 0 9 9 8 5 Tetratricopeptide repeat TPR_11 PF13414.6 EME70882.1 - 1.1e-26 92.2 7.6 2.8e-08 33.3 0.1 7.3 4 3 3 7 7 7 5 TPR repeat TPR_16 PF13432.6 EME70882.1 - 6.8e-23 81.0 39.7 4.6e-08 33.6 5.0 4.9 3 1 1 4 4 4 4 Tetratricopeptide repeat TPR_8 PF13181.6 EME70882.1 - 1.6e-21 74.6 4.1 6.5e-06 26.0 0.0 7.0 8 0 0 8 8 7 4 Tetratricopeptide repeat TPR_14 PF13428.6 EME70882.1 - 2.5e-18 65.2 39.9 1e-05 25.9 1.9 8.0 1 1 6 7 7 7 6 Tetratricopeptide repeat TPR_12 PF13424.6 EME70882.1 - 1.4e-15 57.4 33.9 6.9e-05 23.1 0.5 5.3 3 2 2 5 5 5 5 Tetratricopeptide repeat TPR_17 PF13431.6 EME70882.1 - 1.9e-14 52.9 12.0 0.031 14.6 0.0 7.4 8 0 0 8 8 7 4 Tetratricopeptide repeat TPR_10 PF13374.6 EME70882.1 - 5.4e-12 45.2 37.3 0.00014 21.6 0.4 6.7 6 0 0 6 6 6 5 Tetratricopeptide repeat TPR_19 PF14559.6 EME70882.1 - 1.1e-11 45.1 29.3 0.0016 18.9 4.1 5.8 2 1 5 7 7 7 7 Tetratricopeptide repeat TPR_7 PF13176.6 EME70882.1 - 9.4e-11 41.0 14.4 0.063 13.3 0.0 6.5 6 0 0 6 6 6 4 Tetratricopeptide repeat TPR_15 PF13429.6 EME70882.1 - 5.5e-08 32.4 15.5 0.00068 18.9 2.8 3.1 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_6 PF13174.6 EME70882.1 - 2.7e-07 30.8 11.2 0.066 13.9 0.0 6.0 6 0 0 6 6 6 2 Tetratricopeptide repeat ANAPC3 PF12895.7 EME70882.1 - 1.3e-05 25.4 4.5 0.1 12.9 0.5 3.4 3 0 0 3 3 3 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_9 PF13371.6 EME70882.1 - 3.1e-05 24.0 6.8 3.1e-05 24.0 6.8 4.8 4 1 1 6 6 5 3 Tetratricopeptide repeat Glyco_transf_9 PF01075.17 EME70882.1 - 0.00029 20.2 0.1 0.00076 18.9 0.1 1.6 1 0 0 1 1 1 1 Glycosyltransferase family 9 (heptosyltransferase) TPR_4 PF07721.14 EME70882.1 - 0.00046 20.5 38.1 0.0078 16.7 0.4 7.5 6 0 0 6 6 6 2 Tetratricopeptide repeat Coatomer_E PF04733.14 EME70882.1 - 0.01 15.3 0.3 0.6 9.5 0.1 2.2 1 1 1 2 2 2 0 Coatomer epsilon subunit FAT PF02259.23 EME70882.1 - 0.021 14.1 0.0 0.83 8.8 0.0 2.3 1 1 1 2 2 2 0 FAT domain TPR_3 PF07720.12 EME70882.1 - 0.15 12.1 0.0 5.7 7.1 0.1 2.7 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_21 PF09976.9 EME70882.1 - 0.33 10.7 12.3 2.4 7.8 0.1 3.2 3 1 1 4 4 4 0 Tetratricopeptide repeat-like domain Wzy_C_2 PF11846.8 EME70882.1 - 0.68 9.8 4.3 2.2 8.2 0.6 2.7 2 1 1 3 3 3 0 Virulence factor membrane-bound polymerase, C-terminal TPR_20 PF14561.6 EME70882.1 - 0.81 10.1 11.9 17 5.9 0.0 4.7 3 1 2 5 5 5 0 Tetratricopeptide repeat BTAD PF03704.17 EME70882.1 - 0.88 10.0 27.5 2 8.8 0.4 3.6 1 1 2 3 3 3 0 Bacterial transcriptional activator domain OEP PF02321.18 EME70883.1 - 3.1e-52 177.1 13.8 3.3e-27 95.5 4.0 2.1 2 0 0 2 2 2 2 Outer membrane efflux protein Phosphorylase PF00343.20 EME70884.1 - 0 1072.2 0.0 0 1072.0 0.0 1.0 1 0 0 1 1 1 1 Carbohydrate phosphorylase DUF2798 PF11391.8 EME70885.1 - 4.3e-17 61.9 6.9 5.3e-17 61.6 6.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2798) Glyco_hydro_77 PF02446.17 EME70886.1 - 2.2e-119 399.4 0.0 2.8e-119 399.0 0.0 1.0 1 0 0 1 1 1 1 4-alpha-glucanotransferase CBM_48 PF02922.18 EME70887.1 - 2.1e-20 72.8 0.0 4.2e-20 71.9 0.0 1.5 1 0 0 1 1 1 1 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Alpha-amylase PF00128.24 EME70887.1 - 2.1e-15 57.1 0.0 7.8e-09 35.5 0.0 3.1 2 1 1 3 3 3 3 Alpha amylase, catalytic domain ParE_toxin PF05016.15 EME70888.1 - 3.7e-11 43.5 1.3 4.2e-11 43.3 1.3 1.0 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE PhdYeFM_antitox PF02604.19 EME70889.1 - 4.8e-12 45.5 0.0 5.9e-12 45.2 0.0 1.2 1 0 0 1 1 1 1 Antitoxin Phd_YefM, type II toxin-antitoxin system CBM_48 PF02922.18 EME70890.1 - 2.6e-27 95.0 0.0 2.9e-22 78.8 0.0 2.8 2 0 0 2 2 2 2 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Alpha-amylase_C PF02806.18 EME70890.1 - 2.3e-19 69.7 0.0 5.1e-19 68.5 0.0 1.7 1 0 0 1 1 1 1 Alpha amylase, C-terminal all-beta domain Alpha-amylase PF00128.24 EME70890.1 - 1.5e-12 47.8 0.0 1.8e-06 27.8 0.0 2.3 1 1 1 2 2 2 2 Alpha amylase, catalytic domain Glyco_hydro_70 PF02324.16 EME70890.1 - 0.023 12.9 0.0 0.041 12.1 0.0 1.3 1 0 0 1 1 1 0 Glycosyl hydrolase family 70 MCPsignal PF00015.21 EME70892.1 - 2e-29 102.6 56.2 5.8e-29 101.1 26.2 4.1 2 2 2 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 EME70892.1 - 2.6e-07 30.9 5.5 4.5e-07 30.1 0.3 3.9 3 0 0 3 3 3 1 HAMP domain 4HB_MCP_1 PF12729.7 EME70892.1 - 0.0046 16.5 0.4 0.0046 16.5 0.4 4.1 4 1 1 5 5 4 1 Four helix bundle sensory module for signal transduction DUF1664 PF07889.12 EME70892.1 - 0.02 14.9 19.1 0.43 10.6 0.9 5.3 3 3 3 6 6 6 0 Protein of unknown function (DUF1664) DUF1515 PF07439.11 EME70892.1 - 0.055 13.5 14.5 0.13 12.2 0.3 4.3 4 0 0 4 4 4 0 Protein of unknown function (DUF1515) Dynactin_p22 PF07426.11 EME70892.1 - 0.28 11.0 3.5 0.62 9.9 0.0 2.9 3 1 0 3 3 3 0 Dynactin subunit p22 Cauli_AT PF03233.13 EME70892.1 - 0.33 10.8 3.7 26 4.7 0.0 3.7 3 1 1 4 4 4 0 Aphid transmission protein DUF948 PF06103.11 EME70892.1 - 0.44 10.8 36.4 0.18 12.1 1.4 7.0 3 2 2 6 6 6 0 Bacterial protein of unknown function (DUF948) DUF1759 PF03564.15 EME70892.1 - 1.1 9.1 3.7 1.1 9.2 0.1 2.8 3 2 2 5 5 5 0 Protein of unknown function (DUF1759) ADIP PF11559.8 EME70892.1 - 1.3 9.1 8.1 0.17 12.0 2.2 2.6 2 1 0 2 2 2 0 Afadin- and alpha -actinin-Binding DUF5082 PF16888.5 EME70892.1 - 1.5 9.1 11.4 1.5 9.1 2.2 3.0 3 0 0 3 3 2 0 Domain of unknown function (DUF5082) TMPIT PF07851.13 EME70892.1 - 1.8 7.7 6.5 5 6.3 0.6 3.0 3 0 0 3 3 3 0 TMPIT-like protein SKA1 PF07160.12 EME70892.1 - 2.8 7.7 9.5 15 5.3 2.7 3.3 3 0 0 3 3 3 0 Spindle and kinetochore-associated protein 1 Occludin_ELL PF07303.13 EME70892.1 - 3.7 8.3 4.4 4.1 8.2 0.1 3.2 4 1 0 4 4 3 0 Occludin homology domain BLOC1_2 PF10046.9 EME70892.1 - 4.1 7.8 12.2 11 6.5 0.4 4.8 3 2 1 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Vps53_N PF04100.12 EME70892.1 - 8.5 5.2 10.7 1.7 7.5 4.1 2.6 1 1 1 2 2 2 0 Vps53-like, N-terminal Ferric_reduct PF01794.19 EME70894.1 - 2e-18 66.7 5.4 3.8e-18 65.8 5.4 1.5 1 0 0 1 1 1 1 Ferric reductase like transmembrane component Oxidored_molyb PF00174.19 EME70895.1 - 3.9e-31 108.0 0.0 5.3e-31 107.5 0.0 1.1 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain UCR_Fe-S_N PF10399.9 EME70895.1 - 1 8.7 4.2 2.1 7.8 4.2 1.4 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Peptidase_M48 PF01435.18 EME70896.1 - 6.5e-25 88.1 0.1 1.4e-24 86.9 0.1 1.5 1 1 0 1 1 1 1 Peptidase family M48 DUF4157 PF13699.6 EME70896.1 - 0.0036 17.5 0.1 0.0096 16.1 0.1 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4157) BSP PF04450.12 EME70896.1 - 0.014 15.2 0.0 0.02 14.7 0.0 1.2 1 0 0 1 1 1 0 Peptidase of plants and bacteria DUF898 PF05987.13 EME70897.1 - 8.5e-78 261.8 22.0 9.5e-78 261.6 22.0 1.0 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF898) DUF1686 PF07937.11 EME70897.1 - 0.044 13.7 0.1 0.084 12.7 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1686) DUF3533 PF12051.8 EME70897.1 - 0.073 12.0 1.9 0.13 11.2 1.9 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3533) DUF4231 PF14015.6 EME70897.1 - 1.6 9.2 5.6 0.56 10.7 1.4 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4231) MCPsignal PF00015.21 EME70898.1 - 5.2e-30 104.5 30.0 5.2e-30 104.5 30.0 5.2 2 1 3 5 5 5 2 Methyl-accepting chemotaxis protein (MCP) signalling domain 4HB_MCP_1 PF12729.7 EME70898.1 - 1.1e-15 57.7 0.0 1.1e-15 57.7 0.0 4.8 4 3 1 5 5 4 1 Four helix bundle sensory module for signal transduction HAMP PF00672.25 EME70898.1 - 6.1e-09 36.1 0.1 6.1e-09 36.1 0.1 4.0 4 1 0 4 4 3 1 HAMP domain DUF948 PF06103.11 EME70898.1 - 0.00094 19.4 24.4 0.18 12.1 2.7 5.1 1 1 4 5 5 5 5 Bacterial protein of unknown function (DUF948) DUF1664 PF07889.12 EME70898.1 - 0.0015 18.6 15.4 0.1 12.6 1.4 3.8 3 2 0 3 3 3 2 Protein of unknown function (DUF1664) HTH_24 PF13412.6 EME70898.1 - 0.011 15.2 0.0 0.038 13.5 0.0 1.9 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF3450 PF11932.8 EME70898.1 - 0.012 14.9 22.9 0.074 12.3 8.8 2.9 2 1 0 2 2 2 0 Protein of unknown function (DUF3450) IFT57 PF10498.9 EME70898.1 - 0.022 13.7 7.2 0.43 9.5 0.4 2.3 2 0 0 2 2 2 0 Intra-flagellar transport protein 57 Sec34 PF04136.15 EME70898.1 - 0.084 12.8 6.3 5.8 6.8 0.1 3.6 2 2 1 3 3 3 0 Sec34-like family PIN_8 PF18476.1 EME70898.1 - 0.15 11.9 9.4 0.36 10.7 1.7 2.7 1 1 1 2 2 2 0 PIN like domain DUF812 PF05667.11 EME70898.1 - 0.52 9.1 19.9 0.9 8.3 18.2 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF812) BLOC1_2 PF10046.9 EME70898.1 - 1 9.7 9.8 1.4 9.3 0.8 3.9 2 2 1 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 COG6 PF06419.11 EME70898.1 - 1.1 7.4 9.4 0.89 7.7 1.5 2.9 3 0 0 3 3 3 0 Conserved oligomeric complex COG6 Syntaxin_2 PF14523.6 EME70898.1 - 2.2 8.7 7.8 4 7.9 1.5 3.6 2 2 0 2 2 2 0 Syntaxin-like protein Med22 PF06179.12 EME70898.1 - 2.6 8.3 12.9 10 6.4 0.0 4.2 3 1 1 4 4 4 0 Surfeit locus protein 5 subunit 22 of Mediator complex Not3 PF04065.15 EME70898.1 - 3.9 6.9 11.3 0.062 12.7 1.2 2.5 2 1 1 3 3 3 0 Not1 N-terminal domain, CCR4-Not complex component TMPIT PF07851.13 EME70898.1 - 3.9 6.6 6.3 7.7 5.7 0.4 2.5 2 0 0 2 2 2 0 TMPIT-like protein DUF724 PF05266.14 EME70898.1 - 7.9 6.3 16.1 3.8 7.3 0.7 3.6 2 1 2 4 4 4 0 Protein of unknown function (DUF724) ADH_zinc_N PF00107.26 EME70899.1 - 4.7e-10 39.5 0.0 8.1e-10 38.8 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 EME70899.1 - 3.7e-06 26.8 0.0 8.1e-06 25.7 0.0 1.6 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_N_2 PF16884.5 EME70899.1 - 0.0051 16.7 0.1 0.13 12.2 0.1 2.8 2 1 0 2 2 2 1 N-terminal domain of oxidoreductase adh_short PF00106.25 EME70899.1 - 0.018 14.5 0.2 0.037 13.5 0.2 1.4 1 0 0 1 1 1 0 short chain dehydrogenase SBF PF01758.16 EME70900.1 - 1.4e-29 103.2 7.5 1.4e-29 103.2 7.5 1.7 2 0 0 2 2 2 1 Sodium Bile acid symporter family SBF_like PF13593.6 EME70900.1 - 1.4e-20 73.9 18.8 1.6e-20 73.6 18.8 1.0 1 0 0 1 1 1 1 SBF-like CPA transporter family (DUF4137) Mem_trans PF03547.18 EME70900.1 - 1.8e-06 26.6 10.6 1.8e-06 26.6 10.6 2.2 2 1 0 2 2 2 1 Membrane transport protein DUF2070 PF09843.9 EME70900.1 - 4.3 5.5 15.5 31 2.7 13.6 2.0 1 1 0 1 1 1 0 Predicted membrane protein (DUF2070) UbiA PF01040.18 EME70901.1 - 7e-37 127.1 22.5 8.7e-37 126.8 22.5 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family Ubie_methyltran PF01209.18 EME70902.1 - 2.3e-71 239.8 0.0 2.7e-71 239.6 0.0 1.0 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.6 EME70902.1 - 1.4e-18 67.4 0.0 3.5e-18 66.1 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 EME70902.1 - 2e-18 66.8 0.0 3.7e-18 66.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 EME70902.1 - 6.5e-10 39.1 0.0 8.8e-10 38.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 EME70902.1 - 6.8e-09 35.7 0.0 9.2e-09 35.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 EME70902.1 - 2.6e-08 34.5 0.0 4.1e-08 33.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.15 EME70902.1 - 0.22 11.3 0.0 0.99 9.2 0.0 1.9 2 0 0 2 2 2 0 Hypothetical methyltransferase ABC2_membrane_2 PF12679.7 EME70903.1 - 9.1e-17 61.3 23.2 2.5e-16 59.8 23.2 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 EME70903.1 - 5.3e-09 35.7 20.9 5.3e-09 35.7 20.9 2.0 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 EME70903.1 - 3.4e-08 33.2 26.0 6.4e-08 32.3 26.0 1.4 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_4 PF12730.7 EME70903.1 - 0.027 14.4 16.9 0.018 15.0 14.1 2.1 1 1 0 1 1 1 0 ABC-2 family transporter protein NosL PF05573.12 EME70904.1 - 0.00027 21.3 0.2 0.00093 19.6 0.2 2.0 1 1 0 1 1 1 1 NosL zf-FCS PF06467.14 EME70904.1 - 0.045 13.7 0.1 0.18 11.7 0.0 1.9 1 1 1 2 2 2 0 MYM-type Zinc finger with FCS sequence motif zf-BED PF02892.15 EME70904.1 - 0.18 11.9 0.0 0.39 10.8 0.0 1.5 1 0 0 1 1 1 0 BED zinc finger ABC_tran PF00005.27 EME70905.1 - 4.7e-24 85.5 0.0 9.2e-24 84.5 0.0 1.5 2 0 0 2 2 1 1 ABC transporter AAA_21 PF13304.6 EME70905.1 - 7e-11 42.5 0.4 2.8e-05 24.1 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 EME70905.1 - 6.1e-08 32.4 0.0 7.9e-05 22.2 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain IstB_IS21 PF01695.17 EME70905.1 - 5.2e-06 26.3 0.1 0.009 15.8 0.0 2.2 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_29 PF13555.6 EME70905.1 - 0.0045 16.7 0.1 0.0086 15.8 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 EME70905.1 - 0.0068 16.2 0.0 0.027 14.2 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 EME70905.1 - 0.0073 16.8 0.0 0.011 16.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 EME70905.1 - 0.0077 16.0 0.3 0.52 9.9 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain MMR_HSR1 PF01926.23 EME70905.1 - 0.013 15.6 0.3 0.033 14.3 0.1 1.8 2 0 0 2 2 2 0 50S ribosome-binding GTPase TsaE PF02367.17 EME70905.1 - 0.014 15.4 0.0 0.024 14.6 0.0 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_16 PF13191.6 EME70905.1 - 0.015 15.7 0.2 0.03 14.7 0.0 1.6 2 0 0 2 2 1 0 AAA ATPase domain RsgA_GTPase PF03193.16 EME70905.1 - 0.016 15.1 0.1 0.026 14.4 0.1 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_25 PF13481.6 EME70905.1 - 0.034 13.7 0.4 0.08 12.5 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 EME70905.1 - 0.054 13.8 0.5 0.16 12.2 0.1 1.8 2 0 0 2 2 2 0 AAA domain DUF3584 PF12128.8 EME70905.1 - 0.054 11.0 0.1 0.079 10.5 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) MeaB PF03308.16 EME70905.1 - 0.055 12.4 0.1 0.09 11.7 0.1 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB PduV-EutP PF10662.9 EME70905.1 - 0.057 13.2 0.1 0.13 12.0 0.1 1.5 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation cobW PF02492.19 EME70905.1 - 0.066 12.8 0.5 0.12 11.9 0.1 1.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain DUF815 PF05673.13 EME70905.1 - 0.067 12.3 1.3 0.23 10.6 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF815) SRP54 PF00448.22 EME70905.1 - 0.088 12.4 0.1 0.15 11.6 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain NTPase_1 PF03266.15 EME70905.1 - 0.094 12.6 1.6 0.2 11.6 0.1 2.0 2 1 0 2 2 2 0 NTPase Zeta_toxin PF06414.12 EME70905.1 - 0.1 11.9 0.0 0.17 11.1 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_28 PF13521.6 EME70905.1 - 0.12 12.6 0.2 0.3 11.3 0.2 1.6 1 0 0 1 1 1 0 AAA domain FeoB_N PF02421.18 EME70905.1 - 0.13 11.8 1.8 0.85 9.1 0.0 2.3 2 1 0 2 2 2 0 Ferrous iron transport protein B AAA_7 PF12775.7 EME70905.1 - 0.14 11.7 0.0 0.21 11.1 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_33 PF13671.6 EME70905.1 - 0.14 12.3 0.1 0.54 10.4 0.1 1.8 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 EME70905.1 - 0.15 11.8 0.0 0.26 11.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain Arf PF00025.21 EME70905.1 - 0.17 11.3 0.2 0.54 9.7 0.0 1.7 2 0 0 2 2 2 0 ADP-ribosylation factor family TrwB_AAD_bind PF10412.9 EME70905.1 - 0.19 10.6 0.0 0.27 10.1 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain Roc PF08477.13 EME70905.1 - 0.2 11.9 0.0 0.36 11.0 0.0 1.4 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase AAA_19 PF13245.6 EME70905.1 - 0.21 11.9 0.3 0.51 10.7 0.1 1.7 2 0 0 2 2 2 0 AAA domain Fer4_5 PF12801.7 EME70906.1 - 7.1e-11 41.9 20.2 1.6e-08 34.4 1.5 3.0 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 EME70906.1 - 7.7e-06 26.4 10.0 0.0098 16.5 1.8 3.4 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.27 EME70906.1 - 3e-05 23.7 2.7 3e-05 23.7 2.7 3.5 4 0 0 4 4 4 1 4Fe-4S binding domain Fer4_16 PF13484.6 EME70906.1 - 0.0016 19.4 0.8 0.0016 19.4 0.8 3.4 4 0 0 4 4 4 1 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 EME70906.1 - 0.0033 17.4 4.0 0.0033 17.4 4.0 3.8 4 0 0 4 4 4 1 4Fe-4S binding domain Fer4_21 PF14697.6 EME70906.1 - 0.0037 17.4 8.0 0.0037 17.4 8.0 2.4 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 EME70906.1 - 0.0044 17.1 11.3 0.14 12.3 10.8 2.8 2 1 1 3 3 3 1 4Fe-4S dicluster domain Fer4_18 PF13746.6 EME70906.1 - 0.0076 16.4 7.2 0.071 13.3 6.0 2.6 2 1 0 2 2 2 1 4Fe-4S dicluster domain Nodulin_late PF07127.11 EME70906.1 - 0.013 15.8 0.2 0.049 14.0 0.2 2.0 1 0 0 1 1 1 0 Late nodulin protein Fer4_10 PF13237.6 EME70906.1 - 0.015 15.4 14.6 0.03 14.4 3.2 3.0 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 EME70906.1 - 0.018 15.5 3.3 0.018 15.5 3.3 3.6 4 0 0 4 4 3 0 4Fe-4S binding domain Fer4_6 PF12837.7 EME70906.1 - 0.022 14.8 3.2 0.022 14.8 3.2 3.3 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_3 PF12798.7 EME70906.1 - 0.03 15.2 3.4 0.03 15.2 3.4 4.0 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_8 PF13183.6 EME70906.1 - 0.03 14.7 0.7 0.03 14.7 0.7 3.5 3 1 1 4 4 4 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 EME70906.1 - 2.2 8.9 15.8 0.58 10.7 2.6 3.7 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4 PF00037.27 EME70907.1 - 8.9e-15 53.8 32.1 1.7e-06 27.6 4.9 4.6 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_7 PF12838.7 EME70907.1 - 1.8e-12 47.7 26.7 6.1e-08 33.1 7.5 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 EME70907.1 - 2.3e-12 46.4 31.7 0.00043 20.2 3.1 4.6 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_16 PF13484.6 EME70907.1 - 4.1e-12 46.9 22.5 0.00042 21.2 2.0 3.9 2 1 1 3 3 3 3 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 EME70907.1 - 4.9e-12 45.8 18.7 2.7e-05 24.2 0.1 3.5 3 0 0 3 3 3 3 4Fe-4S dicluster domain Fer4_21 PF14697.6 EME70907.1 - 1.9e-08 34.3 28.2 0.0018 18.4 4.6 3.7 3 1 1 4 4 4 3 4Fe-4S dicluster domain Fer4_4 PF12800.7 EME70907.1 - 2.4e-08 33.8 31.0 0.0025 18.2 3.3 4.5 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_3 PF12798.7 EME70907.1 - 3.5e-06 27.6 41.3 0.0014 19.4 6.4 4.5 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_2 PF12797.7 EME70907.1 - 1.2e-05 25.1 30.4 0.0036 17.3 2.1 4.7 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_10 PF13237.6 EME70907.1 - 3.5e-05 23.8 32.1 0.017 15.3 10.6 3.9 2 2 2 4 4 4 4 4Fe-4S dicluster domain Fer4_8 PF13183.6 EME70907.1 - 0.00013 22.3 22.9 0.0023 18.4 0.0 3.7 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 EME70907.1 - 0.0012 19.3 27.7 0.017 15.6 1.6 4.0 3 2 0 3 3 3 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 EME70907.1 - 0.0036 18.1 20.2 0.73 10.7 5.0 3.5 2 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 EME70907.1 - 0.0073 16.5 0.3 0.0073 16.5 0.3 4.0 3 1 1 4 4 4 2 4Fe-4S dicluster domain NosD PF05048.13 EME70908.1 - 1.6e-46 158.5 19.6 9.8e-44 149.4 13.7 2.1 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 EME70908.1 - 1.3e-30 106.3 25.3 4.8e-21 75.2 10.3 2.2 1 1 1 2 2 2 2 Right handed beta helix region Pectate_lyase_3 PF12708.7 EME70908.1 - 0.00049 20.0 11.0 0.11 12.4 1.8 3.2 1 1 2 3 3 3 2 Pectate lyase superfamily protein DUF2502 PF10697.9 EME70908.1 - 0.29 11.5 9.4 0.078 13.3 3.4 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2502) TMEM125 PF15109.6 EME70909.1 - 0.0096 16.2 0.1 0.017 15.4 0.1 1.5 1 0 0 1 1 1 1 TMEM125 protein family Cytochrom_C PF00034.21 EME70910.1 - 1.7e-17 64.3 2.3 1.4e-07 32.5 0.0 2.9 2 1 0 2 2 2 2 Cytochrome c Cytochrome_CBB3 PF13442.6 EME70910.1 - 6.2e-17 61.7 2.0 6.2e-10 39.3 0.2 2.5 3 0 0 3 3 3 2 Cytochrome C oxidase, cbb3-type, subunit III Cytochrom_C1 PF02167.15 EME70910.1 - 0.00026 20.8 0.0 0.14 11.9 0.0 2.3 2 0 0 2 2 2 2 Cytochrome C1 family Cytochrom_C550 PF14495.6 EME70910.1 - 0.00058 19.6 0.0 0.014 15.1 0.0 2.3 2 0 0 2 2 2 1 Cytochrome c-550 domain Paired_CXXCH_1 PF09699.10 EME70910.1 - 0.0045 16.7 0.3 2.9 7.7 0.0 2.5 2 0 0 2 2 2 2 Doubled CXXCH motif (Paired_CXXCH_1) Cytochrome-c551 PF10643.9 EME70910.1 - 0.022 14.3 0.0 0.034 13.7 0.0 1.4 1 0 0 1 1 1 0 Photosystem P840 reaction-centre cytochrome c-551 Cytochrome_C7 PF14522.6 EME70910.1 - 0.057 13.4 0.2 5.4 7.1 0.1 2.3 2 0 0 2 2 2 0 Cytochrome c7 and related cytochrome c MCR PF18509.1 EME70910.1 - 0.32 10.6 2.1 8.5 6.1 0.1 2.4 2 0 0 2 2 2 0 Magnetochrome domain Cytochrom_C PF00034.21 EME70911.1 - 1e-24 87.5 3.2 1.6e-11 45.2 0.1 2.7 2 1 0 2 2 2 2 Cytochrome c Cytochrome_CBB3 PF13442.6 EME70911.1 - 2.5e-17 62.9 1.8 1.4e-07 31.7 0.1 2.2 2 0 0 2 2 2 2 Cytochrome C oxidase, cbb3-type, subunit III DUF3365 PF11845.8 EME70911.1 - 0.0011 19.3 2.8 0.46 10.8 0.2 2.5 1 1 2 3 3 3 2 Protein of unknown function (DUF3365) Cytochrome_C7 PF14522.6 EME70911.1 - 0.0052 16.8 0.0 3.5 7.7 0.0 2.3 2 0 0 2 2 2 2 Cytochrome c7 and related cytochrome c Haem_bd PF14376.6 EME70911.1 - 0.0065 16.4 0.1 1.9 8.4 0.0 2.4 1 1 0 2 2 2 2 Haem-binding domain Paired_CXXCH_1 PF09699.10 EME70911.1 - 0.0065 16.2 0.2 4.9 7.0 0.0 2.5 2 0 0 2 2 2 2 Doubled CXXCH motif (Paired_CXXCH_1) FixO PF02433.15 EME70911.1 - 0.0084 15.6 0.0 0.68 9.3 0.0 2.8 2 1 1 3 3 3 1 Cytochrome C oxidase, mono-heme subunit/FixO DHOR PF06537.11 EME70911.1 - 0.0096 14.6 0.2 1.2 7.7 0.0 2.1 1 1 1 2 2 2 2 Di-haem oxidoreductase, putative peroxidase DUF1924 PF09086.11 EME70911.1 - 0.051 13.9 0.8 3.7 8.0 0.0 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF1924) Cytochrom_c3_2 PF14537.6 EME70911.1 - 0.051 14.0 0.1 11 6.5 0.0 2.3 2 0 0 2 2 2 0 Cytochrome c3 PSCyt1 PF07635.11 EME70911.1 - 0.99 10.0 4.3 11 6.7 0.2 2.7 2 1 0 2 2 2 0 Planctomycete cytochrome C nos_propeller PF18764.1 EME70912.1 - 7.6e-38 128.3 0.4 5.3e-36 122.4 0.2 3.1 3 0 0 3 3 3 1 Nitrous oxide reductase propeller repeat Cupredoxin_1 PF13473.6 EME70912.1 - 1.9e-07 31.2 0.0 3.8e-07 30.2 0.0 1.5 1 0 0 1 1 1 1 Cupredoxin-like domain COX2 PF00116.20 EME70912.1 - 0.00075 19.4 0.0 0.0016 18.3 0.0 1.5 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, periplasmic domain Copper-bind PF00127.20 EME70912.1 - 0.15 12.5 0.8 0.77 10.2 0.0 2.5 3 0 0 3 3 3 0 Copper binding proteins, plastocyanin/azurin family SCO1-SenC PF02630.14 EME70913.1 - 3.2e-44 150.1 0.0 4e-44 149.8 0.0 1.1 1 0 0 1 1 1 1 SCO1/SenC AhpC-TSA PF00578.21 EME70913.1 - 0.085 12.8 0.0 0.13 12.2 0.0 1.3 1 1 0 1 1 1 0 AhpC/TSA family Redoxin PF08534.10 EME70914.1 - 6.3e-14 51.9 0.0 7.6e-14 51.7 0.0 1.1 1 0 0 1 1 1 1 Redoxin AhpC-TSA PF00578.21 EME70914.1 - 2.4e-13 50.1 0.0 3.5e-13 49.5 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Thioredoxin_8 PF13905.6 EME70914.1 - 8.4e-10 38.9 0.0 1.1e-09 38.5 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin PF00085.20 EME70914.1 - 2e-05 24.5 0.0 0.0028 17.6 0.0 2.1 1 1 1 2 2 2 2 Thioredoxin Thioredoxin_2 PF13098.6 EME70914.1 - 0.0074 16.7 0.0 0.017 15.6 0.0 1.5 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_7 PF13899.6 EME70914.1 - 0.032 14.4 0.1 0.054 13.7 0.1 1.6 1 1 0 1 1 1 0 Thioredoxin-like AhpC-TSA_2 PF13911.6 EME70914.1 - 0.18 11.9 0.0 0.27 11.3 0.0 1.3 1 0 0 1 1 1 0 AhpC/TSA antioxidant enzyme PCuAC PF04314.13 EME70915.1 - 1.5e-35 121.3 0.1 2.2e-35 120.8 0.1 1.2 1 0 0 1 1 1 1 Copper chaperone PCu(A)C PetL PF05115.14 EME70915.1 - 0.21 11.6 1.6 5.5 7.1 1.5 2.2 2 0 0 2 2 2 0 Cytochrome B6-F complex subunit VI (PetL) Hemerythrin PF01814.23 EME70917.1 - 1.7e-09 38.4 5.2 2.2e-09 38.0 5.2 1.1 1 0 0 1 1 1 1 Hemerythrin HHE cation binding domain EAL PF00563.20 EME70919.1 - 1.4e-64 217.9 0.0 2e-64 217.4 0.0 1.2 1 0 0 1 1 1 1 EAL domain cNMP_binding PF00027.29 EME70919.1 - 2.8e-20 72.2 0.1 8.9e-20 70.6 0.1 1.9 2 0 0 2 2 2 1 Cyclic nucleotide-binding domain GGDEF PF00990.21 EME70920.1 - 1.6e-39 135.2 0.0 2.1e-39 134.8 0.0 1.1 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain CZB PF13682.6 EME70920.1 - 9e-09 35.7 0.0 1.6e-08 34.9 0.0 1.4 1 0 0 1 1 1 1 Chemoreceptor zinc-binding domain GGDEF_2 PF17853.1 EME70920.1 - 0.00039 20.7 0.3 0.0013 19.0 0.1 1.9 2 0 0 2 2 2 1 GGDEF-like domain PAS_7 PF12860.7 EME70921.1 - 2e-81 269.7 1.5 6.7e-40 135.8 0.0 4.2 2 1 2 4 4 4 2 PAS fold HATPase_c PF02518.26 EME70921.1 - 2.6e-22 79.4 0.0 5.2e-22 78.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 EME70921.1 - 1.2e-20 73.3 0.3 7.3e-19 67.6 0.0 2.9 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.10 EME70921.1 - 5.1e-19 68.6 1.3 8.2e-11 42.1 0.1 3.6 3 0 0 3 3 3 3 PAS fold PAS PF00989.25 EME70921.1 - 1.3e-11 44.5 0.4 0.0022 18.0 0.0 4.1 4 0 0 4 4 4 3 PAS fold PAS_9 PF13426.7 EME70921.1 - 2.1e-10 40.7 0.0 1.1e-05 25.6 0.0 3.4 3 0 0 3 3 3 2 PAS domain PAS_8 PF13188.7 EME70921.1 - 7.5e-07 29.0 1.1 0.25 11.4 0.1 3.8 3 0 0 3 3 3 2 PAS domain MLTR_LBD PF17765.1 EME70921.1 - 0.0049 17.0 0.0 2.4 8.3 0.0 3.0 2 0 0 2 2 2 1 MmyB-like transcription regulator ligand binding domain Replicase PF03090.17 EME70921.1 - 0.13 12.1 0.0 0.23 11.3 0.0 1.3 1 0 0 1 1 1 0 Replicase family ANAPC5 PF12862.7 EME70921.1 - 0.4 10.8 2.3 7.5 6.7 0.7 2.4 2 0 0 2 2 2 0 Anaphase-promoting complex subunit 5 Radical_SAM_N PF08497.10 EME70922.1 - 3.2e-139 463.3 0.0 4.3e-139 462.9 0.0 1.2 1 0 0 1 1 1 1 Radical SAM N-terminal DUF3362 PF11842.8 EME70922.1 - 2e-41 141.8 0.0 3.9e-41 140.9 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF3362) Radical_SAM PF04055.21 EME70922.1 - 2.5e-20 73.5 0.0 1.1e-19 71.4 0.1 1.9 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.19 EME70922.1 - 0.016 15.3 0.1 2.9 8.0 0.0 3.0 2 1 0 2 2 2 0 B12 binding domain MMPL PF03176.15 EME70923.1 - 2.6e-21 75.9 44.1 2.8e-13 49.5 22.2 2.9 3 1 1 4 4 4 2 MMPL family Patched PF02460.18 EME70923.1 - 0.0017 16.6 9.4 0.0017 16.6 9.4 2.6 3 1 1 4 4 4 1 Patched family GGDEF_2 PF17853.1 EME70923.1 - 0.48 10.7 6.2 12 6.2 0.1 3.6 3 1 0 3 3 3 0 GGDEF-like domain YdjC PF04794.12 EME70924.1 - 1.7e-55 188.6 0.0 2.1e-55 188.3 0.0 1.1 1 0 0 1 1 1 1 YdjC-like protein LPG_synthase_TM PF03706.13 EME70925.1 - 1.4e-25 90.5 35.6 1.7e-25 90.2 35.6 1.1 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region MCPsignal PF00015.21 EME70926.1 - 3.4e-33 114.9 41.5 1.1e-30 106.7 25.8 3.1 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain TarH PF02203.15 EME70926.1 - 1.1e-26 93.9 0.0 1.1e-26 93.9 0.0 4.0 4 1 1 5 5 5 1 Tar ligand binding domain homologue 4HB_MCP_1 PF12729.7 EME70926.1 - 1.1e-16 60.9 3.7 1.8e-15 56.9 0.0 3.7 3 1 1 4 4 4 1 Four helix bundle sensory module for signal transduction PAS_3 PF08447.12 EME70926.1 - 3.8e-15 55.9 0.0 8.8e-15 54.8 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 EME70926.1 - 9.2e-13 48.4 0.0 2.7e-12 46.8 0.0 1.8 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 EME70926.1 - 4.3e-10 39.6 0.0 1.5e-09 37.9 0.0 1.8 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.10 EME70926.1 - 2.5e-06 27.7 0.0 2.2e-05 24.7 0.0 2.6 2 1 0 2 2 2 1 PAS fold HAMP PF00672.25 EME70926.1 - 0.00019 21.8 3.7 0.02 15.3 0.0 4.4 4 1 0 5 5 5 1 HAMP domain PAS_8 PF13188.7 EME70926.1 - 0.0011 19.0 0.0 0.0034 17.4 0.0 1.8 1 0 0 1 1 1 1 PAS domain DUF1664 PF07889.12 EME70926.1 - 0.022 14.8 13.0 1.2 9.2 1.2 4.0 3 2 2 5 5 5 0 Protein of unknown function (DUF1664) DUF3450 PF11932.8 EME70926.1 - 0.21 10.9 14.5 0.018 14.4 3.3 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF3450) DUF948 PF06103.11 EME70926.1 - 0.34 11.2 26.4 0.085 13.1 1.8 5.1 4 2 2 6 6 6 0 Bacterial protein of unknown function (DUF948) TMPIT PF07851.13 EME70926.1 - 0.5 9.6 3.2 11 5.1 0.4 2.9 3 0 0 3 3 3 0 TMPIT-like protein zf-C4H2 PF10146.9 EME70926.1 - 0.7 10.2 2.8 2.3 8.5 0.2 2.3 2 0 0 2 2 2 0 Zinc finger-containing protein IFT57 PF10498.9 EME70926.1 - 1.7 7.5 5.6 0.4 9.6 0.2 2.3 2 1 0 2 2 2 0 Intra-flagellar transport protein 57 AIP3 PF03915.13 EME70926.1 - 1.8 7.5 10.7 1.9 7.5 7.8 2.3 2 1 1 3 3 3 0 Actin interacting protein 3 Laminin_I PF06008.14 EME70926.1 - 6.2 6.4 19.0 1.9 8.1 3.9 3.0 1 1 0 2 2 2 0 Laminin Domain I COG2 PF06148.11 EME70926.1 - 7.8 6.6 9.9 12 6.0 0.3 4.0 4 2 0 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 FlaC_arch PF05377.11 EME70926.1 - 8 6.9 6.7 28 5.2 0.1 3.9 4 0 0 4 4 4 0 Flagella accessory protein C (FlaC) PseudoU_synth_2 PF00849.22 EME70927.1 - 7e-35 120.5 0.0 9.3e-35 120.1 0.0 1.2 1 0 0 1 1 1 1 RNA pseudouridylate synthase S4 PF01479.25 EME70927.1 - 9.7e-05 22.0 0.0 0.00019 21.1 0.0 1.5 1 0 0 1 1 1 1 S4 domain HAMP_N3 PF18575.1 EME70927.1 - 0.12 11.9 0.0 0.23 11.1 0.0 1.4 1 0 0 1 1 1 0 HAMP N-terminal domain 3 Ub-Mut7C PF14451.6 EME70927.1 - 0.13 12.1 0.0 0.32 10.9 0.0 1.6 1 0 0 1 1 1 0 Mut7-C ubiquitin HAD_2 PF13419.6 EME70928.1 - 1.7e-28 99.9 0.0 2.4e-28 99.4 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 EME70928.1 - 7.5e-19 68.8 0.1 4e-12 46.9 0.1 2.9 2 1 1 3 3 3 2 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 EME70928.1 - 9.8e-12 44.8 0.1 2e-11 43.8 0.1 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 EME70928.1 - 2.3e-10 41.2 0.0 3.7e-10 40.5 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 EME70928.1 - 3.2e-06 27.1 0.0 0.24 11.1 0.0 3.0 3 0 0 3 3 3 2 haloacid dehalogenase-like hydrolase ADH_zinc_N PF00107.26 EME70928.1 - 0.016 15.2 0.2 0.078 13.0 0.2 1.9 2 0 0 2 2 2 0 Zinc-binding dehydrogenase Hydrolase_6 PF13344.6 EME70928.1 - 0.032 14.3 0.0 10 6.3 0.0 2.4 2 1 0 2 2 2 0 Haloacid dehalogenase-like hydrolase AsmA PF05170.14 EME70929.1 - 7.9e-25 87.7 0.0 1.4e-11 44.0 0.1 2.5 2 1 0 2 2 2 2 AsmA family AsmA_2 PF13502.6 EME70929.1 - 3.3e-13 49.7 13.6 1.7e-12 47.4 0.9 4.6 4 1 2 6 6 6 2 AsmA-like C-terminal region PHF12_MRG_bd PF16737.5 EME70929.1 - 0.19 11.5 0.5 0.46 10.3 0.5 1.6 1 0 0 1 1 1 0 PHD finger protein 12 MRG binding domain ATP12 PF07542.11 EME70930.1 - 1.6e-36 125.3 0.0 2.3e-36 124.7 0.0 1.3 1 0 0 1 1 1 1 ATP12 chaperone protein Methyltransf_11 PF08241.12 EME70931.1 - 9.7e-14 51.8 0.0 2e-13 50.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 EME70931.1 - 1.1e-12 48.1 0.0 1.9e-12 47.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 EME70931.1 - 1.9e-12 47.7 0.0 4.2e-12 46.6 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 EME70931.1 - 1.2e-10 42.0 0.0 4.6e-10 40.1 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain TPR_2 PF07719.17 EME70931.1 - 2.1e-10 39.9 0.4 0.018 15.1 0.0 4.2 4 0 0 4 4 3 3 Tetratricopeptide repeat TPR_16 PF13432.6 EME70931.1 - 5.5e-10 39.7 2.6 0.0011 19.5 0.3 2.8 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_14 PF13428.6 EME70931.1 - 2.8e-09 37.0 13.9 0.00067 20.3 0.1 5.3 6 1 1 7 7 4 2 Tetratricopeptide repeat TPR_19 PF14559.6 EME70931.1 - 8.4e-09 35.8 0.4 0.00034 21.1 0.3 2.8 2 0 0 2 2 2 2 Tetratricopeptide repeat Methyltransf_31 PF13847.6 EME70931.1 - 1.2e-08 34.9 0.0 2.7e-08 33.7 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain TPR_12 PF13424.6 EME70931.1 - 1.8e-06 28.1 2.1 0.023 15.0 0.1 3.7 2 2 1 3 3 3 2 Tetratricopeptide repeat TPR_1 PF00515.28 EME70931.1 - 4.4e-06 26.3 0.0 0.018 14.8 0.0 3.5 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_9 PF13371.6 EME70931.1 - 6.7e-06 26.2 3.3 0.0059 16.7 0.0 2.5 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_10 PF13374.6 EME70931.1 - 7.7e-06 25.6 3.1 0.22 11.4 0.0 3.6 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_11 PF13414.6 EME70931.1 - 8.5e-06 25.4 0.0 0.023 14.4 0.0 3.3 2 1 1 3 3 3 1 TPR repeat TPR_6 PF13174.6 EME70931.1 - 9.3e-05 22.8 0.8 2.1 9.1 0.0 4.1 4 0 0 4 4 3 1 Tetratricopeptide repeat TPR_8 PF13181.6 EME70931.1 - 0.00018 21.4 0.0 0.49 10.7 0.0 3.5 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_7 PF13176.6 EME70931.1 - 0.00038 20.3 0.0 0.24 11.5 0.0 3.7 3 0 0 3 3 3 1 Tetratricopeptide repeat NodS PF05401.11 EME70931.1 - 0.0006 19.5 0.0 0.00098 18.8 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) BTAD PF03704.17 EME70931.1 - 0.0026 18.2 0.4 1.7 9.1 0.0 2.5 2 0 0 2 2 2 1 Bacterial transcriptional activator domain MTS PF05175.14 EME70931.1 - 0.0093 15.5 0.0 0.027 14.0 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase small domain TPR_4 PF07721.14 EME70931.1 - 0.011 16.2 0.7 0.097 13.4 0.2 5.0 6 0 0 6 6 4 0 Tetratricopeptide repeat TPR_20 PF14561.6 EME70931.1 - 0.015 15.7 0.1 8 6.9 0.1 3.1 2 1 1 3 3 3 0 Tetratricopeptide repeat Ubie_methyltran PF01209.18 EME70931.1 - 0.015 14.7 0.0 0.024 14.0 0.0 1.3 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family TPR_5 PF12688.7 EME70931.1 - 0.015 15.5 0.3 3.7 7.8 0.0 2.4 2 0 0 2 2 2 0 Tetratrico peptide repeat ANAPC3 PF12895.7 EME70931.1 - 0.027 14.7 0.0 2 8.7 0.0 2.3 2 0 0 2 2 2 0 Anaphase-promoting complex, cyclosome, subunit 3 PPR PF01535.20 EME70931.1 - 0.17 12.2 0.9 45 4.6 0.0 3.7 4 0 0 4 4 3 0 PPR repeat PPR_1 PF12854.7 EME70931.1 - 0.71 9.6 4.8 2.6 7.8 0.2 3.2 3 0 0 3 3 3 0 PPR repeat Ribosomal_L17 PF01196.19 EME70932.1 - 6.5e-35 119.9 0.0 8e-35 119.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L17 RNA_pol_A_CTD PF03118.15 EME70933.1 - 6.4e-25 86.7 1.6 6.4e-25 86.7 1.6 1.7 2 0 0 2 2 2 1 Bacterial RNA polymerase, alpha chain C terminal domain RNA_pol_L PF01193.24 EME70933.1 - 1.4e-23 82.1 0.0 3.5e-23 80.8 0.0 1.7 1 1 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_A_bac PF01000.26 EME70933.1 - 1.7e-22 79.9 0.0 6.1e-22 78.1 0.0 1.9 1 1 1 2 2 2 1 RNA polymerase Rpb3/RpoA insert domain DUF211 PF02680.14 EME70933.1 - 0.051 13.7 0.1 2.8 8.1 0.0 2.5 2 0 0 2 2 2 0 Uncharacterized ArCR, COG1888 Big_2 PF02368.18 EME70933.1 - 0.19 11.6 0.5 3.2 7.7 0.2 2.5 3 0 0 3 3 3 0 Bacterial Ig-like domain (group 2) Ribosomal_S11 PF00411.19 EME70934.1 - 1.1e-49 167.4 1.2 1.3e-49 167.2 1.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S11 Ribosomal_S13 PF00416.22 EME70935.1 - 7.6e-32 110.4 6.2 2.7e-30 105.4 6.2 2.0 1 1 0 1 1 1 1 Ribosomal protein S13/S18 ADK PF00406.22 EME70936.1 - 2e-57 193.5 0.0 2.4e-57 193.3 0.0 1.0 1 0 0 1 1 1 1 Adenylate kinase AAA_17 PF13207.6 EME70936.1 - 2.6e-22 79.7 0.1 4.7e-22 78.9 0.1 1.4 1 0 0 1 1 1 1 AAA domain ADK_lid PF05191.14 EME70936.1 - 5.7e-12 45.4 0.9 9.6e-12 44.7 0.9 1.4 1 0 0 1 1 1 1 Adenylate kinase, active site lid Hydin_ADK PF17213.3 EME70936.1 - 0.0002 21.7 0.2 0.29 11.4 0.1 2.2 1 1 0 2 2 2 2 Hydin Adenylate kinase-like domain AAA_33 PF13671.6 EME70936.1 - 0.00039 20.6 0.0 0.00063 19.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain DUF1451 PF07295.11 EME70936.1 - 0.00041 20.4 1.0 0.00087 19.4 1.0 1.5 1 0 0 1 1 1 1 Zinc-ribbon containing domain AAA_18 PF13238.6 EME70936.1 - 0.0039 17.7 0.0 0.0069 16.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 EME70936.1 - 0.009 15.8 0.0 0.013 15.2 0.0 1.3 1 0 0 1 1 1 1 Cytidylate kinase HypA PF01155.19 EME70936.1 - 0.044 13.8 0.0 0.07 13.1 0.0 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Mg_chelatase PF01078.21 EME70936.1 - 0.057 12.8 0.1 0.086 12.2 0.1 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI zf-IS66 PF13005.7 EME70936.1 - 0.074 13.5 1.8 2.8 8.4 0.3 2.3 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Rubredoxin_2 PF18073.1 EME70936.1 - 0.085 12.6 4.7 1.1 9.0 4.7 2.1 1 1 0 1 1 1 0 Rubredoxin metal binding domain AAA PF00004.29 EME70936.1 - 0.14 12.6 0.0 0.23 11.9 0.0 1.3 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Zn-ribbon_8 PF09723.10 EME70936.1 - 0.24 11.6 2.0 0.42 10.8 2.0 1.4 1 0 0 1 1 1 0 Zinc ribbon domain SecY PF00344.20 EME70937.1 - 2.6e-116 388.2 20.5 3.1e-116 387.9 20.5 1.1 1 0 0 1 1 1 1 SecY translocase SieB PF14163.6 EME70937.1 - 1.9 8.0 5.1 8.4 5.9 0.4 2.9 2 1 0 2 2 2 0 Super-infection exclusion protein B DUF485 PF04341.12 EME70937.1 - 2.9 7.9 7.7 1.6 8.8 0.3 3.2 3 0 0 3 3 3 0 Protein of unknown function, DUF485 FixS PF03597.15 EME70937.1 - 6.4 6.6 11.8 3.7 7.3 2.4 3.2 2 0 0 2 2 2 0 Cytochrome oxidase maturation protein cbb3-type Ribosomal_L27A PF00828.19 EME70938.1 - 6.5e-37 127.1 3.4 7.9e-37 126.8 3.4 1.1 1 0 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Ribosomal_L30 PF00327.20 EME70939.1 - 4.2e-18 65.0 0.0 5.1e-18 64.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_S5_C PF03719.15 EME70940.1 - 7e-30 102.3 0.2 1.1e-29 101.6 0.2 1.4 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_S5 PF00333.20 EME70940.1 - 9e-29 99.3 4.7 1.7e-28 98.4 4.7 1.5 1 0 0 1 1 1 1 Ribosomal protein S5, N-terminal domain Ribosomal_L18p PF00861.22 EME70941.1 - 1.2e-42 144.9 1.7 1.3e-42 144.8 1.7 1.0 1 0 0 1 1 1 1 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Ribosomal_L5e PF17144.4 EME70941.1 - 0.055 13.5 0.1 0.067 13.2 0.1 1.1 1 0 0 1 1 1 0 Ribosomal large subunit proteins 60S L5, and 50S L18 Ribosomal_L6 PF00347.23 EME70942.1 - 1.7e-39 134.3 1.3 2.6e-19 69.7 0.7 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 Ribosomal_S8 PF00410.19 EME70943.1 - 1.8e-44 150.7 0.0 2e-44 150.6 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_S14 PF00253.21 EME70944.1 - 1.4e-24 85.6 2.2 2.6e-24 84.7 2.2 1.5 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e SpoIIIAH PF12685.7 EME70944.1 - 0.19 11.6 0.4 0.23 11.3 0.4 1.2 1 0 0 1 1 1 0 SpoIIIAH-like protein Ribosomal_L5_C PF00673.21 EME70945.1 - 3e-42 142.7 0.0 4.6e-42 142.1 0.0 1.3 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.19 EME70945.1 - 2.3e-28 98.3 0.9 4.3e-28 97.4 0.9 1.4 1 0 0 1 1 1 1 Ribosomal protein L5 ribosomal_L24 PF17136.4 EME70946.1 - 1.3e-27 96.0 1.9 1.3e-27 96.0 1.9 1.6 2 0 0 2 2 2 1 Ribosomal proteins 50S L24/mitochondrial 39S L24 KOW PF00467.29 EME70946.1 - 9.5e-06 25.4 1.1 9.5e-06 25.4 1.1 2.0 2 0 0 2 2 2 1 KOW motif DUF1918 PF08940.11 EME70946.1 - 0.31 10.7 4.7 6.4 6.5 0.2 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF1918) Ribosomal_L14 PF00238.19 EME70947.1 - 1.7e-55 186.3 2.3 1.9e-55 186.2 2.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e Ribosomal_S17 PF00366.20 EME70948.1 - 3.7e-33 113.4 5.5 4.2e-33 113.3 5.5 1.0 1 0 0 1 1 1 1 Ribosomal protein S17 Ribosomal_L29 PF00831.23 EME70949.1 - 7e-24 83.6 4.4 7.9e-24 83.4 4.4 1.0 1 0 0 1 1 1 1 Ribosomal L29 protein MRP-L47 PF06984.13 EME70949.1 - 0.0014 18.7 0.2 0.0019 18.3 0.2 1.2 1 0 0 1 1 1 1 Mitochondrial 39-S ribosomal protein L47 (MRP-L47) CdvA PF18822.1 EME70949.1 - 0.022 14.6 0.5 0.044 13.6 0.4 1.6 1 1 0 1 1 1 0 CdvA-like coiled-coil domain APC_N_CC PF16689.5 EME70949.1 - 0.086 12.9 0.6 0.13 12.4 0.6 1.6 1 1 0 1 1 1 0 Coiled-coil N-terminus of APC, dimerisation domain DUF1192 PF06698.11 EME70949.1 - 0.12 12.4 3.9 0.48 10.5 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1192) FlgM PF04316.13 EME70949.1 - 0.43 11.0 3.5 5.8 7.4 0.4 2.2 1 1 1 2 2 2 0 Anti-sigma-28 factor, FlgM Ribosomal_L16 PF00252.18 EME70950.1 - 2.6e-48 163.4 0.3 2.9e-48 163.2 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e Ribosomal_S3_C PF00189.20 EME70951.1 - 1.3e-39 134.6 1.0 2.9e-39 133.5 1.0 1.6 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.17 EME70951.1 - 4e-22 77.8 2.9 9.1e-22 76.7 2.9 1.6 1 0 0 1 1 1 1 KH domain KH_4 PF13083.6 EME70951.1 - 0.035 14.0 0.1 0.07 13.0 0.1 1.5 1 0 0 1 1 1 0 KH domain Ribosomal_L22 PF00237.19 EME70952.1 - 1.9e-29 101.9 0.8 2.2e-29 101.7 0.8 1.1 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Ribosomal_S19 PF00203.21 EME70953.1 - 1.4e-34 117.8 0.0 1.6e-34 117.6 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19 Ribosomal_L2_C PF03947.18 EME70954.1 - 5.1e-58 194.8 3.3 8.6e-58 194.0 3.3 1.4 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.23 EME70954.1 - 7.6e-33 112.3 0.6 1.5e-32 111.4 0.6 1.5 1 0 0 1 1 1 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_L23 PF00276.20 EME70955.1 - 1.4e-31 108.7 0.4 1.7e-31 108.5 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L23 VWA PF00092.28 EME70955.1 - 0.034 14.4 0.0 0.04 14.2 0.0 1.0 1 0 0 1 1 1 0 von Willebrand factor type A domain Ribosomal_L4 PF00573.22 EME70956.1 - 4.3e-63 212.5 0.1 4.8e-63 212.3 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L3 PF00297.22 EME70957.1 - 6.3e-19 68.2 6.8 2.8e-16 59.5 4.5 2.5 1 1 1 2 2 2 2 Ribosomal protein L3 Ribosomal_S10 PF00338.22 EME70958.1 - 2.2e-37 127.2 0.2 2.4e-37 127.1 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e MazE_antitoxin PF04014.18 EME70959.1 - 4.6e-11 42.4 0.1 6.1e-11 42.0 0.1 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin PIN PF01850.21 EME70960.1 - 2e-13 50.9 0.0 2.2e-13 50.8 0.0 1.0 1 0 0 1 1 1 1 PIN domain DUF4411 PF14367.6 EME70960.1 - 0.012 15.5 0.0 0.79 9.6 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4411) PIN_3 PF13470.6 EME70960.1 - 0.072 13.9 0.0 0.088 13.6 0.0 1.4 1 1 0 1 1 1 0 PIN domain 2-oxoacid_dh PF00198.23 EME70961.1 - 1.2e-12 47.7 0.0 1.3e-12 47.7 0.0 1.0 1 0 0 1 1 1 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Nitroreductase PF00881.24 EME70962.1 - 2.4e-19 70.0 4.6 1e-16 61.5 4.6 2.0 1 1 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 EME70962.1 - 0.0026 17.4 2.0 0.1 12.2 0.1 2.7 2 1 1 3 3 3 2 Putative TM nitroreductase 4HBT_2 PF13279.6 EME70963.1 - 1.4e-10 41.8 0.0 1.6e-10 41.6 0.0 1.0 1 0 0 1 1 1 1 Thioesterase-like superfamily 4HBT PF03061.22 EME70963.1 - 2.3e-10 40.7 0.0 4e-10 39.9 0.0 1.4 1 1 0 1 1 1 1 Thioesterase superfamily Inhibitor_I78 PF11720.8 EME70963.1 - 0.031 14.3 0.0 0.05 13.7 0.0 1.3 1 0 0 1 1 1 0 Peptidase inhibitor I78 family Molybdopterin PF00384.22 EME70965.1 - 9.5e-56 189.6 0.0 1.7e-55 188.7 0.0 1.4 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 EME70965.1 - 5.3e-21 74.7 0.0 1e-20 73.8 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 EME70965.1 - 2.9e-13 49.6 0.5 5.5e-13 48.7 0.5 1.5 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Peripla_BP_6 PF13458.6 EME70966.1 - 6.4e-67 226.6 3.2 7.2e-67 226.5 3.2 1.0 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 EME70966.1 - 3.9e-30 105.1 0.0 4.6e-30 104.8 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.28 EME70966.1 - 7.7e-16 58.1 0.0 9e-16 57.9 0.0 1.0 1 0 0 1 1 1 1 Receptor family ligand binding region TPP_enzyme_M PF00205.22 EME70966.1 - 0.055 13.2 0.0 0.1 12.3 0.0 1.4 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, central domain EspF PF04806.12 EME70966.1 - 0.094 13.1 0.1 3 8.3 0.0 2.4 2 1 0 2 2 2 0 EspF protein repeat MFS_1 PF07690.16 EME70967.1 - 1.7e-33 116.0 52.3 4e-29 101.7 37.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 EME70967.1 - 0.0032 16.4 13.6 0.0032 16.4 13.6 2.9 2 1 0 2 2 2 1 Sugar (and other) transporter CopD PF05425.13 EME70967.1 - 0.018 15.4 9.9 0.018 15.4 9.9 4.2 2 1 0 4 4 4 0 Copper resistance protein D OATP PF03137.20 EME70967.1 - 0.018 13.3 1.3 0.068 11.5 0.0 2.2 1 1 1 2 2 2 0 Organic Anion Transporter Polypeptide (OATP) family HTH_5 PF01022.20 EME70968.1 - 3.3e-16 58.9 0.2 4.8e-16 58.4 0.2 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 EME70968.1 - 1.1e-11 44.7 0.2 2.1e-11 43.7 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.6 EME70968.1 - 0.0061 16.3 0.0 0.013 15.2 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain BH4 PF02180.17 EME70968.1 - 0.008 16.0 0.0 0.012 15.4 0.0 1.3 1 0 0 1 1 1 1 Bcl-2 homology region 4 MarR_2 PF12802.7 EME70968.1 - 0.011 15.5 0.2 0.025 14.5 0.2 1.6 1 0 0 1 1 1 0 MarR family DprA_WH PF17782.1 EME70968.1 - 0.013 15.6 2.0 0.064 13.4 0.2 2.1 2 0 0 2 2 2 0 DprA winged helix domain HTH_Crp_2 PF13545.6 EME70968.1 - 0.054 13.5 0.0 0.12 12.4 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Trp_repressor PF01371.19 EME70968.1 - 0.059 13.5 0.0 0.09 12.9 0.0 1.3 1 0 0 1 1 1 0 Trp repressor protein PaaX PF07848.12 EME70968.1 - 0.1 12.8 0.0 0.17 12.1 0.0 1.4 1 0 0 1 1 1 0 PaaX-like protein HTH_29 PF13551.6 EME70968.1 - 0.12 12.4 0.4 0.19 11.7 0.4 1.3 1 0 0 1 1 1 0 Winged helix-turn helix TrmB PF01978.19 EME70968.1 - 0.12 12.2 0.0 0.21 11.5 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_40 PF14493.6 EME70968.1 - 0.17 12.4 0.0 0.28 11.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain DUF4423 PF14394.6 EME70968.1 - 0.22 11.2 0.0 0.28 10.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) LMWPc PF01451.21 EME70969.1 - 1.3e-18 67.7 0.0 1.7e-18 67.4 0.0 1.1 1 0 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase SBF PF01758.16 EME70970.1 - 5.9e-35 120.7 16.3 5.9e-35 120.7 16.3 2.5 1 1 0 2 2 2 1 Sodium Bile acid symporter family PetL PF05115.14 EME70970.1 - 1.4 8.9 8.1 18 5.4 2.1 3.6 2 0 0 2 2 2 0 Cytochrome B6-F complex subunit VI (PetL) ArsD PF06953.11 EME70971.1 - 9.3e-42 142.3 0.0 1e-41 142.1 0.0 1.0 1 0 0 1 1 1 1 Arsenical resistance operon trans-acting repressor ArsD ArsA_ATPase PF02374.15 EME70972.1 - 6.8e-90 301.3 0.0 2.7e-49 168.0 0.0 4.2 2 2 1 3 3 3 3 Anion-transporting ATPase CbiA PF01656.23 EME70972.1 - 1.2e-20 73.8 0.0 5.5e-09 36.2 0.0 2.3 2 0 0 2 2 2 2 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 EME70972.1 - 1.7e-17 63.9 0.0 2.3e-09 37.4 0.0 2.6 3 0 0 3 3 2 2 AAA domain ParA PF10609.9 EME70972.1 - 1.3e-11 44.5 4.1 9.3e-06 25.3 0.6 3.3 3 0 0 3 3 3 2 NUBPL iron-transfer P-loop NTPase Fer4_NifH PF00142.18 EME70972.1 - 1e-10 41.5 0.1 7.4e-05 22.3 0.0 2.3 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family IstB_IS21 PF01695.17 EME70972.1 - 1.7e-08 34.4 2.2 0.0031 17.3 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_25 PF13481.6 EME70972.1 - 2.5e-08 33.7 7.8 6.7e-06 25.8 2.2 3.1 3 1 0 3 3 2 2 AAA domain MeaB PF03308.16 EME70972.1 - 7.2e-08 31.7 3.1 0.0014 17.7 0.1 2.4 2 0 0 2 2 2 2 Methylmalonyl Co-A mutase-associated GTPase MeaB PhoH PF02562.16 EME70972.1 - 1.5e-07 31.1 2.1 0.0054 16.2 0.0 2.4 2 0 0 2 2 2 2 PhoH-like protein CBP_BcsQ PF06564.12 EME70972.1 - 4.3e-07 29.7 2.6 0.0026 17.3 0.0 2.8 2 1 0 2 2 2 2 Cellulose biosynthesis protein BcsQ AAA_16 PF13191.6 EME70972.1 - 2e-05 25.0 4.0 0.0032 17.9 0.1 2.8 2 1 0 2 2 2 2 AAA ATPase domain AAA_33 PF13671.6 EME70972.1 - 0.00022 21.4 0.2 0.017 15.3 0.0 3.1 3 0 0 3 3 3 1 AAA domain APS_kinase PF01583.20 EME70972.1 - 0.00026 20.9 1.2 0.22 11.4 0.1 2.4 2 0 0 2 2 2 2 Adenylylsulphate kinase SRP54 PF00448.22 EME70972.1 - 0.00045 19.9 6.7 0.013 15.2 1.0 3.2 3 0 0 3 3 3 1 SRP54-type protein, GTPase domain AAA PF00004.29 EME70972.1 - 0.0011 19.4 2.3 0.079 13.4 0.4 3.2 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 EME70972.1 - 0.0017 18.3 6.3 0.032 14.1 0.8 3.0 3 0 0 3 3 3 1 NACHT domain MipZ PF09140.11 EME70972.1 - 0.002 17.4 7.4 0.017 14.4 3.0 3.1 3 1 0 3 3 2 1 ATPase MipZ RsgA_GTPase PF03193.16 EME70972.1 - 0.004 17.1 1.1 1 9.2 0.1 2.4 2 0 0 2 2 2 1 RsgA GTPase ATP_bind_1 PF03029.17 EME70972.1 - 0.0059 16.4 2.4 1.4 8.6 0.4 2.4 2 0 0 2 2 2 2 Conserved hypothetical ATP binding protein AAA_30 PF13604.6 EME70972.1 - 0.0094 15.7 11.4 0.058 13.1 3.0 3.1 4 0 0 4 4 3 1 AAA domain NB-ARC PF00931.22 EME70972.1 - 0.012 14.9 4.7 0.078 12.1 0.5 2.2 2 0 0 2 2 2 0 NB-ARC domain TsaE PF02367.17 EME70972.1 - 0.018 15.1 0.5 0.34 10.9 0.0 2.4 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_24 PF13479.6 EME70972.1 - 0.019 14.7 1.4 1.6 8.4 0.1 2.7 2 2 0 2 2 2 0 AAA domain ABC_tran PF00005.27 EME70972.1 - 0.021 15.3 0.1 0.58 10.7 0.0 2.3 2 0 0 2 2 2 0 ABC transporter VirC1 PF07015.11 EME70972.1 - 0.021 14.1 3.3 0.54 9.5 0.5 2.4 2 0 0 2 2 2 0 VirC1 protein RuvB_N PF05496.12 EME70972.1 - 0.028 14.2 0.6 0.35 10.6 0.1 2.4 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain PIF1 PF05970.14 EME70972.1 - 0.044 13.0 0.3 4.7 6.3 0.0 2.3 2 0 0 2 2 2 0 PIF1-like helicase AAA_29 PF13555.6 EME70972.1 - 0.055 13.2 3.7 0.96 9.2 0.5 2.5 2 0 0 2 2 2 0 P-loop containing region of AAA domain CTP_synth_N PF06418.14 EME70972.1 - 0.079 12.3 0.3 4.3 6.6 0.1 2.2 2 0 0 2 2 2 0 CTP synthase N-terminus AAA_23 PF13476.6 EME70972.1 - 0.083 13.4 0.3 2.2 8.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 EME70972.1 - 0.1 12.6 0.3 2.1 8.4 0.0 2.4 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 EME70972.1 - 0.1 12.9 1.0 2.9 8.2 0.1 2.8 2 1 0 2 2 2 0 AAA domain NTPase_1 PF03266.15 EME70972.1 - 0.12 12.3 3.4 2 8.3 0.2 2.7 3 0 0 3 3 3 0 NTPase MMR_HSR1 PF01926.23 EME70972.1 - 0.12 12.5 0.2 1.1 9.4 0.1 2.4 2 1 0 2 2 2 0 50S ribosome-binding GTPase MobB PF03205.14 EME70972.1 - 0.13 12.1 0.5 2.2 8.2 0.1 2.4 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Roc PF08477.13 EME70972.1 - 0.4 10.9 1.4 9 6.5 0.0 2.2 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase LpxK PF02606.14 EME70972.1 - 0.64 9.1 2.5 14 4.6 0.6 2.2 2 0 0 2 2 2 0 Tetraacyldisaccharide-1-P 4'-kinase Zeta_toxin PF06414.12 EME70972.1 - 0.76 9.0 4.3 1.1 8.5 0.4 2.6 3 0 0 3 3 2 0 Zeta toxin PduV-EutP PF10662.9 EME70972.1 - 1.1 9.0 3.2 3.2 7.5 0.2 2.3 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_18 PF13238.6 EME70972.1 - 3.3 8.3 5.1 8.2 7.0 0.1 2.8 3 0 0 3 3 3 0 AAA domain Mg_chelatase PF01078.21 EME70972.1 - 4.4 6.6 5.6 1.7 8.0 0.7 2.6 3 0 0 3 3 3 0 Magnesium chelatase, subunit ChlI MCPsignal PF00015.21 EME70973.1 - 3.4e-30 105.1 48.3 2.7e-29 102.2 29.4 3.5 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 EME70973.1 - 1.8e-08 34.6 1.5 1.9e-07 31.3 0.2 3.4 2 0 0 2 2 2 1 HAMP domain 4HB_MCP_1 PF12729.7 EME70973.1 - 0.00062 19.4 0.5 0.00062 19.4 0.5 3.3 3 1 0 4 4 4 1 Four helix bundle sensory module for signal transduction DUF1664 PF07889.12 EME70973.1 - 0.18 11.9 12.6 1.8 8.6 0.6 3.8 2 2 1 3 3 3 0 Protein of unknown function (DUF1664) Sec34 PF04136.15 EME70973.1 - 4.1 7.3 5.2 5.9 6.8 0.8 2.9 2 2 1 3 3 3 0 Sec34-like family Laminin_II PF06009.12 EME70973.1 - 4.1 7.4 21.2 3.7 7.6 2.8 3.7 1 1 1 3 3 3 0 Laminin Domain II DUF4679 PF15728.5 EME70973.1 - 4.8 6.1 14.8 2.7 7.0 3.3 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4679) BLOC1_2 PF10046.9 EME70973.1 - 7 7.0 8.1 9.3 6.6 0.3 4.1 3 1 1 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 MFS_1 PF07690.16 EME70974.1 - 4.4e-19 68.6 58.2 5.6e-09 35.4 27.1 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF962 PF06127.11 EME70974.1 - 8.2 6.6 6.3 7.2 6.8 2.2 2.9 2 2 0 2 2 2 0 Protein of unknown function (DUF962) PhnA PF03831.14 EME70975.1 - 5.6e-33 112.6 5.6 6.9e-33 112.3 5.6 1.1 1 0 0 1 1 1 1 PhnA domain PhnA_Zn_Ribbon PF08274.12 EME70975.1 - 1.8e-14 53.4 4.2 3e-14 52.6 4.2 1.4 1 0 0 1 1 1 1 PhnA Zinc-Ribbon OrfB_Zn_ribbon PF07282.11 EME70975.1 - 0.00015 21.6 0.9 0.00015 21.6 0.9 1.7 2 0 0 2 2 2 1 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.12 EME70975.1 - 0.001 18.6 1.0 0.0023 17.4 1.0 1.7 1 0 0 1 1 1 1 TFIIB zinc-binding A2L_zn_ribbon PF08792.10 EME70975.1 - 0.0036 17.0 0.8 0.0069 16.1 0.8 1.4 1 0 0 1 1 1 1 A2L zinc ribbon domain Zn_Tnp_IS1 PF03811.13 EME70975.1 - 0.012 15.3 1.7 0.031 14.0 0.1 2.3 2 0 0 2 2 2 0 InsA N-terminal domain DUF4469 PF14734.6 EME70975.1 - 0.048 13.8 0.2 0.062 13.5 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4469) with IG-like fold DUF2318 PF10080.9 EME70975.1 - 0.075 13.2 0.2 0.13 12.4 0.2 1.4 1 1 0 1 1 1 0 Predicted membrane protein (DUF2318) PADR1 PF08063.12 EME70975.1 - 0.09 12.6 1.4 0.19 11.5 1.4 1.5 1 0 0 1 1 1 0 PADR1 (NUC008) domain zf-RRN7 PF11781.8 EME70975.1 - 0.16 11.6 2.6 0.6 9.8 2.6 2.0 1 1 0 1 1 1 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Zn_Tnp_IS1595 PF12760.7 EME70975.1 - 0.21 11.6 3.6 0.72 9.9 3.7 1.8 1 1 0 1 1 1 0 Transposase zinc-ribbon domain TFIIS_C PF01096.18 EME70975.1 - 0.29 11.0 5.8 1.7 8.6 0.5 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-ISL3 PF14690.6 EME70975.1 - 0.79 10.4 5.8 0.96 10.2 0.4 2.8 2 1 1 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-Sec23_Sec24 PF04810.15 EME70975.1 - 1.4 9.0 4.9 3.7 7.7 0.3 2.6 2 1 1 3 3 3 0 Sec23/Sec24 zinc finger DUF4379 PF14311.6 EME70975.1 - 3.8 7.9 8.1 0.39 11.1 1.4 2.2 1 1 0 2 2 2 0 Probable Zinc-ribbon domain Zn_ribbon_SprT PF17283.2 EME70975.1 - 4.4 7.3 5.2 14 5.7 0.2 2.8 3 0 0 3 3 3 0 SprT-like zinc ribbon domain PemK_toxin PF02452.17 EME70976.1 - 9.7e-05 22.7 0.0 0.00012 22.5 0.0 1.0 1 0 0 1 1 1 1 PemK-like, MazF-like toxin of type II toxin-antitoxin system DUF3018 PF11455.8 EME70977.1 - 3e-23 81.5 0.1 3.4e-23 81.3 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3018) HEPN_Swt1 PF18731.1 EME70978.1 - 0.14 12.5 0.0 0.32 11.3 0.0 1.6 1 0 0 1 1 1 0 Swt1-like HEPN K_channel_TID PF07941.11 EME70978.1 - 0.15 12.5 0.1 0.38 11.3 0.1 1.6 1 0 0 1 1 1 0 Potassium channel Kv1.4 tandem inactivation domain DEAD PF00270.29 EME70979.1 - 1.4e-19 70.5 0.0 2.3e-19 69.8 0.0 1.3 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 EME70979.1 - 1.8e-12 47.6 0.0 4.6e-12 46.3 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DUF1998 PF09369.10 EME70979.1 - 9.8e-08 32.7 0.4 9.8e-08 32.7 0.4 2.7 3 0 0 3 3 3 1 Domain of unknown function (DUF1998) ResIII PF04851.15 EME70979.1 - 0.00066 19.7 0.0 0.0011 18.9 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit MscS_porin PF12795.7 EME70979.1 - 0.058 12.9 0.2 0.1 12.2 0.2 1.3 1 0 0 1 1 1 0 Mechanosensitive ion channel porin domain zf-ribbon_3 PF13248.6 EME70979.1 - 0.068 12.6 9.4 0.41 10.1 2.9 2.9 2 0 0 2 2 2 0 zinc-ribbon domain PspA_IM30 PF04012.12 EME70979.1 - 0.35 10.4 1.7 0.68 9.5 1.7 1.4 1 0 0 1 1 1 0 PspA/IM30 family HTH_31 PF13560.6 EME70980.1 - 4.1e-10 39.8 0.0 5.4e-10 39.5 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 EME70980.1 - 1.2e-09 38.1 0.0 1.7e-09 37.6 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 EME70980.1 - 1.2e-09 38.0 0.0 1.5e-09 37.7 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain DUF1870 PF08965.10 EME70980.1 - 0.0016 18.5 0.0 0.002 18.1 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1870) Phage_CI_repr PF07022.13 EME70980.1 - 0.019 15.0 0.0 0.026 14.6 0.0 1.2 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain Pou PF00157.17 EME70980.1 - 0.043 13.8 0.0 0.063 13.3 0.0 1.3 1 0 0 1 1 1 0 Pou domain - N-terminal to homeobox domain HTH_25 PF13413.6 EME70980.1 - 0.072 13.0 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain MqsA_antitoxin PF15731.5 EME70980.1 - 0.095 12.8 0.0 0.12 12.5 0.0 1.1 1 0 0 1 1 1 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA Recombinase PF07508.13 EME70981.1 - 8.2e-22 77.6 0.0 1.8e-21 76.5 0.0 1.6 1 0 0 1 1 1 1 Recombinase Resolvase PF00239.21 EME70981.1 - 1.3e-19 70.7 0.1 2.2e-19 70.0 0.1 1.3 1 0 0 1 1 1 1 Resolvase, N terminal domain RepB PF07506.11 EME70982.1 - 2.4e-31 109.3 1.3 3.1e-31 108.9 1.3 1.1 1 0 0 1 1 1 1 RepB plasmid partitioning protein ParBc PF02195.18 EME70982.1 - 3.9e-12 46.3 0.0 2.5e-10 40.5 0.0 2.4 2 0 0 2 2 2 1 ParB-like nuclease domain HTH_19 PF12844.7 EME70982.1 - 0.0013 18.7 1.6 0.98 9.5 0.0 3.1 2 1 0 2 2 2 2 Helix-turn-helix domain HTH_3 PF01381.22 EME70982.1 - 0.049 13.7 1.0 0.31 11.2 0.0 2.8 4 0 0 4 4 4 0 Helix-turn-helix RepB PF07506.11 EME70983.1 - 6.4e-53 179.6 0.3 8.9e-53 179.1 0.3 1.2 1 0 0 1 1 1 1 RepB plasmid partitioning protein ParBc PF02195.18 EME70983.1 - 2.8e-07 30.7 0.0 7.7e-07 29.3 0.0 1.7 1 0 0 1 1 1 1 ParB-like nuclease domain HTH_23 PF13384.6 EME70983.1 - 0.016 15.0 0.1 0.038 13.8 0.1 1.7 1 0 0 1 1 1 0 Homeodomain-like domain DUF3040 PF11239.8 EME70984.1 - 0.4 11.0 5.6 5.8 7.3 2.5 2.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3040) Glyco_hydro_19 PF00182.19 EME70985.1 - 5.8e-12 46.0 0.1 1.2e-10 41.7 0.1 2.4 1 1 1 2 2 2 1 Chitinase class I Phage-tail_3 PF13550.6 EME70986.1 - 3.4e-25 88.8 0.0 7.7e-25 87.6 0.0 1.6 1 0 0 1 1 1 1 Putative phage tail protein Lambda_tail_I PF06805.12 EME70986.1 - 1.2e-19 70.4 0.6 4e-19 68.7 0.6 2.0 1 0 0 1 1 1 1 Bacteriophage lambda tail assembly protein I NLPC_P60 PF00877.19 EME70987.1 - 4.3e-06 26.7 0.0 5.3e-06 26.4 0.0 1.1 1 0 0 1 1 1 1 NlpC/P60 family DUF1833 PF08875.11 EME70988.1 - 1.1e-68 229.5 0.1 1.2e-68 229.3 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1833) DUF736 PF05284.12 EME70988.1 - 0.079 12.9 0.0 0.5 10.3 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF736) Malate_synthase PF01274.22 EME70989.1 - 0.14 10.4 0.7 0.15 10.3 0.7 1.0 1 0 0 1 1 1 0 Malate synthase RCC1 PF00415.18 EME70991.1 - 2.7e-35 120.8 26.4 2.8e-12 47.1 0.5 7.5 7 0 0 7 7 7 6 Regulator of chromosome condensation (RCC1) repeat RCC1_2 PF13540.6 EME70991.1 - 7.1e-19 67.1 28.9 8.1e-06 25.5 0.1 7.5 7 0 0 7 7 7 6 Regulator of chromosome condensation (RCC1) repeat AAA_17 PF13207.6 EME70993.1 - 0.016 15.6 4.2 0.44 11.0 0.5 2.4 2 0 0 2 2 2 0 AAA domain ApoLp-III PF07464.11 EME70993.1 - 0.14 12.3 6.3 1.4 9.0 1.1 2.5 2 0 0 2 2 2 0 Apolipophorin-III precursor (apoLp-III) Tape_meas_lam_C PF09718.10 EME70995.1 - 4.6e-20 71.5 0.8 2.4e-19 69.3 0.8 2.3 1 0 0 1 1 1 1 Lambda phage tail tape-measure protein (Tape_meas_lam_C) TMP_2 PF06791.13 EME70995.1 - 4e-11 43.0 15.6 4e-11 43.0 15.6 4.4 3 1 1 4 4 4 2 Prophage tail length tape measure protein HicB-like_2 PF15970.5 EME71001.1 - 0.021 14.9 0.0 0.028 14.5 0.0 1.2 1 0 0 1 1 1 0 HicB_like antitoxin of bacterial toxin-antitoxin system Gifsy-2 PF13856.6 EME71001.1 - 0.028 14.8 0.0 0.036 14.4 0.0 1.2 1 0 0 1 1 1 0 ATP-binding sugar transporter from pro-phage Phage_cap_E PF03864.15 EME71002.1 - 7.6e-93 311.3 0.4 8.9e-93 311.1 0.4 1.0 1 0 0 1 1 1 1 Phage major capsid protein E HDPD PF02924.14 EME71003.1 - 2.2e-27 95.5 0.6 2.5e-27 95.3 0.6 1.0 1 0 0 1 1 1 1 Bacteriophage lambda head decoration protein D Peptidase_S49 PF01343.18 EME71004.1 - 2.2e-30 105.6 0.2 3.8e-30 104.9 0.2 1.3 1 0 0 1 1 1 1 Peptidase family S49 CLP_protease PF00574.23 EME71004.1 - 0.093 12.6 0.3 0.48 10.3 0.1 2.0 2 0 0 2 2 2 0 Clp protease Phage_portal_2 PF05136.13 EME71005.1 - 1.8e-105 353.1 0.0 2.5e-105 352.6 0.0 1.2 1 0 0 1 1 1 1 Phage portal protein, lambda family PspA_IM30 PF04012.12 EME71006.1 - 0.021 14.4 0.2 0.021 14.4 0.2 1.0 1 0 0 1 1 1 0 PspA/IM30 family Terminase_GpA PF05876.12 EME71007.1 - 8.7e-205 681.5 0.4 1e-204 681.3 0.4 1.0 1 0 0 1 1 1 1 Phage terminase large subunit (GpA) Lar_restr_allev PF14354.6 EME71007.1 - 0.02 15.2 0.5 0.044 14.2 0.5 1.5 1 0 0 1 1 1 0 Restriction alleviation protein Lar DinB_2 PF12867.7 EME71009.1 - 0.0083 16.6 0.1 0.0098 16.4 0.1 1.1 1 0 0 1 1 1 1 DinB superfamily DUF3489 PF11994.8 EME71010.1 - 5.6e-30 103.2 1.0 9.7e-30 102.4 1.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3489) HTH_23 PF13384.6 EME71010.1 - 0.00067 19.4 0.0 0.0014 18.3 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain MarR_2 PF12802.7 EME71010.1 - 0.024 14.5 0.0 1.5 8.7 0.0 2.4 2 0 0 2 2 2 0 MarR family DUF1495 PF07381.11 EME71010.1 - 0.028 14.3 0.0 0.98 9.3 0.0 2.4 2 1 0 2 2 2 0 Winged helix DNA-binding domain (DUF1495) End_N_terminal PF12218.8 EME71010.1 - 0.066 12.9 0.0 0.16 11.7 0.0 1.6 1 0 0 1 1 1 0 N terminal extension of bacteriophage endosialidase HTH_DeoR PF08220.12 EME71010.1 - 0.098 12.4 0.0 0.19 11.5 0.0 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain DUF4232 PF14016.6 EME71010.1 - 0.12 12.5 3.2 0.23 11.6 3.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF4232) DpnD-PcfM PF14207.6 EME71011.1 - 0.002 18.0 0.8 0.0031 17.3 0.8 1.5 1 0 0 1 1 1 1 DpnD/PcfM-like protein N6_N4_Mtase PF01555.18 EME71016.1 - 2.1e-15 57.1 0.3 2.1e-13 50.5 0.3 2.6 1 1 0 1 1 1 1 DNA methylase ParBc PF02195.18 EME71016.1 - 1.6e-11 44.3 0.0 3.9e-11 43.1 0.0 1.7 2 0 0 2 2 2 1 ParB-like nuclease domain UPF0020 PF01170.18 EME71016.1 - 0.045 13.4 0.0 6.9 6.3 0.0 2.3 2 0 0 2 2 2 0 Putative RNA methylase family UPF0020 Met_10 PF02475.16 EME71016.1 - 0.13 11.9 0.0 0.21 11.3 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein N6_N4_Mtase PF01555.18 EME71017.1 - 2.3e-16 60.2 0.0 7.5e-16 58.5 0.0 1.8 1 1 0 1 1 1 1 DNA methylase ParBc PF02195.18 EME71017.1 - 3.7e-13 49.6 0.0 7.6e-13 48.6 0.0 1.6 1 0 0 1 1 1 1 ParB-like nuclease domain HTH_Tnp_4 PF13613.6 EME71018.1 - 0.033 13.9 0.1 0.057 13.1 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease XOO_2897-deam PF14440.6 EME71019.1 - 0.19 11.8 0.0 0.23 11.6 0.0 1.1 1 0 0 1 1 1 0 Xanthomonas XOO_2897-like deaminase TubC_N PF18563.1 EME71021.1 - 4.9e-06 26.4 0.1 1.1e-05 25.3 0.0 1.5 2 0 0 2 2 2 1 TubC N-terminal docking domain Toprim_3 PF13362.6 EME71022.1 - 7.1e-22 77.6 0.2 1.7e-21 76.4 0.2 1.7 1 0 0 1 1 1 1 Toprim domain Toprim_2 PF13155.6 EME71022.1 - 0.046 14.1 0.0 0.081 13.4 0.0 1.4 1 0 0 1 1 1 0 Toprim-like AAA_30 PF13604.6 EME71023.1 - 3.4e-21 75.9 0.0 7.3e-21 74.8 0.0 1.5 1 1 0 1 1 1 1 AAA domain UvrD_C_2 PF13538.6 EME71023.1 - 2.2e-17 62.6 0.1 4.5e-17 61.6 0.1 1.6 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain AAA_19 PF13245.6 EME71023.1 - 3.5e-15 56.6 0.0 6.3e-15 55.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain Viral_helicase1 PF01443.18 EME71023.1 - 5.2e-07 29.6 0.0 0.076 12.7 0.0 3.2 3 0 0 3 3 3 3 Viral (Superfamily 1) RNA helicase AAA_16 PF13191.6 EME71023.1 - 0.018 15.4 0.0 0.035 14.5 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain TsaE PF02367.17 EME71023.1 - 0.024 14.7 0.0 0.052 13.5 0.0 1.6 1 1 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE NB-ARC PF00931.22 EME71023.1 - 0.039 13.1 0.0 0.067 12.4 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain ABC_tran PF00005.27 EME71023.1 - 0.1 13.1 0.2 1.4 9.5 0.2 2.7 1 1 0 1 1 1 0 ABC transporter AAA_33 PF13671.6 EME71023.1 - 0.13 12.4 0.0 0.33 11.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 EME71023.1 - 0.14 12.1 0.0 0.29 11.0 0.0 1.5 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea UvrD-helicase PF00580.21 EME71023.1 - 0.15 11.5 0.2 0.31 10.5 0.2 1.5 1 1 0 1 1 1 0 UvrD/REP helicase N-terminal domain PIF1 PF05970.14 EME71023.1 - 0.16 11.1 7.9 3.6 6.7 0.1 3.7 3 1 0 3 3 3 0 PIF1-like helicase Cas_Cas4 PF01930.17 EME71024.1 - 0.0014 18.8 0.0 0.0022 18.1 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.7 EME71024.1 - 0.0045 16.9 0.0 0.0061 16.5 0.0 1.4 1 1 0 1 1 1 1 PD-(D/E)XK nuclease superfamily VATC PF18716.1 EME71025.1 - 0.07 13.0 0.3 0.13 12.2 0.3 1.6 1 0 0 1 1 1 0 Vms1-associating treble clef domain AAA_24 PF13479.6 EME71028.1 - 8.5e-40 136.6 0.0 1e-39 136.4 0.0 1.0 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 EME71028.1 - 0.064 13.6 0.4 0.36 11.2 0.4 2.0 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.6 EME71028.1 - 0.12 12.6 0.2 0.27 11.5 0.2 1.7 1 1 0 1 1 1 0 AAA domain Sigma70_r2 PF04542.14 EME71031.1 - 2.6e-06 27.1 0.1 4.7e-06 26.3 0.1 1.5 1 0 0 1 1 1 1 Sigma-70 region 2 DUF2924 PF11149.8 EME71035.1 - 5.3e-51 172.6 0.0 6e-51 172.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2924) Resolvase PF00239.21 EME71036.1 - 1.3e-37 129.2 0.0 2.3e-37 128.3 0.0 1.5 1 0 0 1 1 1 1 Resolvase, N terminal domain Zn_ribbon_recom PF13408.6 EME71036.1 - 3.1e-15 56.4 1.2 5.9e-15 55.5 1.2 1.5 1 0 0 1 1 1 1 Recombinase zinc beta ribbon domain Recombinase PF07508.13 EME71036.1 - 1.2e-10 41.7 0.0 2.4e-10 40.7 0.0 1.5 1 0 0 1 1 1 1 Recombinase Ogr_Delta PF04606.12 EME71036.1 - 0.29 11.2 2.5 0.57 10.2 2.5 1.6 1 0 0 1 1 1 0 Ogr/Delta-like zinc finger SoPB_HTH PF18090.1 EME71037.1 - 0.1 12.7 0.0 0.13 12.4 0.0 1.2 1 0 0 1 1 1 0 Centromere-binding protein HTH domain Lac_bphage_repr PF06543.12 EME71039.1 - 0.084 12.9 0.1 0.093 12.7 0.1 1.1 1 0 0 1 1 1 0 Lactococcus bacteriophage repressor EAL PF00563.20 EME71040.1 - 2.5e-69 233.4 0.0 1.2e-68 231.2 0.0 2.0 2 0 0 2 2 2 1 EAL domain GGDEF PF00990.21 EME71040.1 - 1e-47 161.9 0.1 2.1e-47 160.9 0.1 1.6 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain PAS_9 PF13426.7 EME71040.1 - 7e-41 138.7 0.1 2.3e-15 56.7 0.0 3.5 3 0 0 3 3 3 3 PAS domain PAS PF00989.25 EME71040.1 - 6.2e-38 129.3 0.1 5.1e-12 45.8 0.0 3.5 3 0 0 3 3 3 3 PAS fold PAS_8 PF13188.7 EME71040.1 - 2.7e-23 81.5 0.0 1.1e-07 31.7 0.0 4.2 4 0 0 4 4 4 3 PAS domain PAS_4 PF08448.10 EME71040.1 - 2.3e-22 79.3 0.1 1.1e-06 28.8 0.0 4.1 4 0 0 4 4 4 3 PAS fold PAS_3 PF08447.12 EME71040.1 - 1.2e-16 60.8 0.4 3.4e-05 24.0 0.0 4.1 4 0 0 4 4 4 3 PAS fold Response_reg PF00072.24 EME71040.1 - 1.5e-11 44.4 0.0 3.8e-11 43.1 0.0 1.8 1 0 0 1 1 1 1 Response regulator receiver domain PAS_7 PF12860.7 EME71040.1 - 8.5e-05 22.7 0.0 0.69 10.1 0.0 4.5 3 1 0 3 3 3 1 PAS fold Response_reg PF00072.24 EME71041.1 - 1.6e-17 63.7 0.0 1.9e-17 63.4 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.26 EME71042.1 - 3.2e-18 66.3 0.0 6.3e-18 65.3 0.0 1.5 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 EME71042.1 - 1.7e-12 47.1 0.1 3.4e-12 46.2 0.1 1.5 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.6 EME71042.1 - 3e-05 23.9 0.0 5.4e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.6 EME71042.1 - 0.0012 18.8 0.0 0.0021 18.0 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 EME71042.1 - 0.0089 15.9 0.0 0.015 15.1 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase rve PF00665.26 EME71043.1 - 5.5e-15 55.6 0.0 1e-14 54.7 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.6 EME71043.1 - 0.00024 20.8 0.0 0.00049 19.8 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS66 PF03050.14 EME71044.1 - 1.4e-31 110.0 0.1 2.1e-31 109.5 0.1 1.2 1 0 0 1 1 1 1 Transposase IS66 family DDE_Tnp_IS66_C PF13817.6 EME71044.1 - 6.8e-19 67.8 0.0 1.1e-18 67.1 0.0 1.3 1 0 0 1 1 1 1 IS66 C-terminal element NTase_sub_bind PF08780.11 EME71044.1 - 0.032 14.2 0.0 0.052 13.5 0.0 1.3 1 0 0 1 1 1 0 Nucleotidyltransferase substrate binding protein like IstB_IS21 PF01695.17 EME71045.1 - 3.1e-08 33.5 0.0 4.7e-08 33.0 0.0 1.2 1 0 0 1 1 1 1 IstB-like ATP binding protein Response_reg PF00072.24 EME71046.1 - 1.2e-05 25.4 0.0 3.2e-05 24.0 0.0 1.8 1 1 0 1 1 1 1 Response regulator receiver domain RMI1_C PF16099.5 EME71046.1 - 0.0015 18.4 0.0 0.0028 17.5 0.0 1.4 1 0 0 1 1 1 1 Recq-mediated genome instability protein 1, C-terminal OB-fold NAD_binding_10 PF13460.6 EME71047.1 - 4.3e-20 72.4 0.0 4.8e-20 72.2 0.0 1.1 1 0 0 1 1 1 1 NAD(P)H-binding NAD_binding_4 PF07993.12 EME71047.1 - 0.14 11.3 0.0 0.19 10.9 0.0 1.2 1 0 0 1 1 1 0 Male sterility protein ABC_membrane PF00664.23 EME71048.1 - 7.8e-32 111.0 3.6 9.5e-32 110.7 3.6 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 EME71048.1 - 8.2e-31 107.3 0.0 1.8e-30 106.2 0.0 1.6 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 EME71048.1 - 2.6e-07 30.3 0.0 1.5e-05 24.6 0.0 2.3 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 EME71048.1 - 0.018 15.4 0.3 0.087 13.2 0.2 2.2 2 1 0 2 2 2 0 AAA ATPase domain AAA_29 PF13555.6 EME71048.1 - 0.028 14.1 0.6 0.087 12.6 0.1 2.0 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_18 PF13238.6 EME71048.1 - 0.17 12.4 0.0 0.38 11.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain MotA_ExbB PF01618.16 EME71049.1 - 1.2e-31 109.1 3.8 1.7e-31 108.6 3.8 1.3 1 0 0 1 1 1 1 MotA/TolQ/ExbB proton channel family HTH_AsnC-type PF13404.6 EME71049.1 - 2 8.3 7.7 5.9 6.8 0.2 3.4 3 0 0 3 3 3 0 AsnC-type helix-turn-helix domain ExbD PF02472.16 EME71050.1 - 1.4e-24 86.7 0.0 1.5e-24 86.6 0.0 1.0 1 0 0 1 1 1 1 Biopolymer transport protein ExbD/TolR TonB_C PF03544.14 EME71051.1 - 3.5e-13 49.8 0.0 8.7e-13 48.5 0.0 1.7 1 0 0 1 1 1 1 Gram-negative bacterial TonB protein C-terminal TonB_2 PF13103.6 EME71051.1 - 1.2e-09 38.3 0.3 3.8e-09 36.7 0.0 2.0 2 0 0 2 2 2 1 TonB C terminal ABM PF03992.16 EME71052.1 - 4.4e-16 58.8 0.3 7.3e-16 58.1 0.1 1.4 2 0 0 2 2 2 1 Antibiotic biosynthesis monooxygenase CBS PF00571.28 EME71053.1 - 3.2e-20 72.3 0.1 4.4e-12 46.2 0.0 2.1 2 0 0 2 2 2 2 CBS domain DUF4372 PF14294.6 EME71053.1 - 0.069 13.3 0.1 0.53 10.5 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4372) SAICAR_synt PF01259.18 EME71054.1 - 6.7e-78 261.8 0.0 8.6e-78 261.4 0.0 1.1 1 0 0 1 1 1 1 SAICAR synthetase Peripla_BP_6 PF13458.6 EME71055.1 - 4e-46 158.2 0.2 4.7e-46 158.0 0.2 1.0 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 EME71055.1 - 4.3e-06 26.0 0.0 0.00058 19.0 0.0 2.2 2 0 0 2 2 2 2 Periplasmic binding protein domain ANF_receptor PF01094.28 EME71055.1 - 4.5e-06 26.0 0.0 1.7e-05 24.1 0.0 1.8 1 1 0 1 1 1 1 Receptor family ligand binding region LppC PF04348.13 EME71055.1 - 0.11 11.3 0.0 0.2 10.4 0.0 1.4 1 0 0 1 1 1 0 LppC putative lipoprotein BPD_transp_2 PF02653.16 EME71056.1 - 1.7e-40 138.9 36.1 1.9e-40 138.7 36.1 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 EME71057.1 - 2.1e-33 115.6 33.5 3.1e-33 115.1 33.5 1.2 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component ABC_tran PF00005.27 EME71058.1 - 9.8e-25 87.7 0.0 1.3e-24 87.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.8 EME71058.1 - 6.9e-10 38.6 0.0 1.2e-09 37.8 0.0 1.4 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_23 PF13476.6 EME71058.1 - 0.00029 21.4 0.0 0.00044 20.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_21 PF13304.6 EME71058.1 - 0.0014 18.5 1.5 0.0057 16.5 0.2 2.0 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 EME71058.1 - 0.002 18.4 0.3 0.071 13.4 0.3 2.3 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 EME71058.1 - 0.0049 16.2 0.0 0.009 15.3 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA PF00004.29 EME71058.1 - 0.0073 16.7 0.2 0.14 12.6 0.1 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 EME71058.1 - 0.012 16.0 0.1 0.026 14.9 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.6 EME71058.1 - 0.015 15.0 0.5 0.051 13.3 0.5 2.0 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 EME71058.1 - 0.017 14.9 0.0 0.033 13.9 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain SRP54 PF00448.22 EME71058.1 - 0.031 13.9 0.1 0.054 13.1 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain KdpD PF02702.17 EME71058.1 - 0.037 13.5 0.0 0.067 12.7 0.0 1.3 1 0 0 1 1 1 0 Osmosensitive K+ channel His kinase sensor domain Mg_chelatase PF01078.21 EME71058.1 - 0.062 12.7 0.0 0.094 12.1 0.0 1.3 1 1 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_24 PF13479.6 EME71058.1 - 0.065 13.0 0.2 0.18 11.5 0.1 1.8 2 0 0 2 2 2 0 AAA domain SMC_N PF02463.19 EME71058.1 - 0.07 12.6 0.1 0.96 8.8 0.0 2.0 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_25 PF13481.6 EME71058.1 - 0.094 12.3 8.4 0.7 9.4 0.0 2.7 3 1 0 3 3 2 0 AAA domain TsaE PF02367.17 EME71058.1 - 0.13 12.2 0.0 0.32 11.0 0.0 1.6 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_33 PF13671.6 EME71058.1 - 0.14 12.3 0.1 0.16 12.1 0.1 1.4 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 EME71058.1 - 0.15 12.0 0.0 0.25 11.2 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase FeoB_N PF02421.18 EME71058.1 - 0.16 11.5 0.9 1.8 8.0 0.1 2.6 3 0 0 3 3 3 0 Ferrous iron transport protein B AAA_28 PF13521.6 EME71058.1 - 0.18 12.0 0.1 0.38 11.0 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 EME71058.1 - 0.22 11.2 0.0 0.27 10.9 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain ABC_tran PF00005.27 EME71059.1 - 2.3e-30 105.9 0.0 3e-30 105.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 EME71059.1 - 3e-12 47.0 0.1 6.9e-06 26.1 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 EME71059.1 - 4.5e-05 23.0 0.3 0.0092 15.4 0.1 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 EME71059.1 - 0.00038 21.0 0.0 0.00059 20.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 EME71059.1 - 0.0008 19.1 0.1 0.0017 18.1 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 EME71059.1 - 0.001 18.9 0.0 0.0029 17.4 0.0 1.7 2 0 0 2 2 2 1 AAA ATPase domain AAA_16 PF13191.6 EME71059.1 - 0.0035 17.7 0.0 0.0048 17.3 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_28 PF13521.6 EME71059.1 - 0.004 17.4 0.0 0.0067 16.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 EME71059.1 - 0.0044 16.9 0.1 0.011 15.6 0.0 1.6 2 0 0 2 2 2 1 RsgA GTPase MMR_HSR1 PF01926.23 EME71059.1 - 0.012 15.7 0.1 0.021 14.9 0.1 1.4 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_30 PF13604.6 EME71059.1 - 0.013 15.2 1.8 0.036 13.8 1.8 1.8 1 1 0 1 1 1 0 AAA domain DUF3584 PF12128.8 EME71059.1 - 0.054 11.0 0.0 0.073 10.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_27 PF13514.6 EME71059.1 - 0.058 13.0 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 EME71059.1 - 0.065 13.7 0.1 0.12 12.8 0.0 1.6 2 0 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) TsaE PF02367.17 EME71059.1 - 0.068 13.2 0.1 0.13 12.3 0.1 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_13 PF13166.6 EME71059.1 - 0.075 11.7 0.0 0.22 10.1 0.0 1.6 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.6 EME71059.1 - 0.08 13.2 0.1 1.4 9.2 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Mg_chelatase PF01078.21 EME71059.1 - 0.08 12.3 0.1 0.68 9.3 0.1 2.1 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI Dynamin_N PF00350.23 EME71059.1 - 0.1 12.6 0.0 0.28 11.2 0.0 1.8 1 1 0 1 1 1 0 Dynamin family NACHT PF05729.12 EME71059.1 - 0.11 12.5 0.1 0.17 11.8 0.1 1.4 1 0 0 1 1 1 0 NACHT domain Zeta_toxin PF06414.12 EME71059.1 - 0.11 11.7 0.2 0.23 10.7 0.2 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_22 PF13401.6 EME71059.1 - 0.14 12.4 0.1 0.27 11.5 0.1 1.7 1 1 0 1 1 1 0 AAA domain DLIC PF05783.11 EME71059.1 - 0.23 10.3 0.1 0.33 9.7 0.1 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) AbrB_C PF18277.1 EME71059.1 - 0.44 10.2 1.8 1.7 8.3 0.0 2.4 3 0 0 3 3 2 0 AbrB C-terminal domain AMP-binding PF00501.28 EME71060.1 - 2.1e-58 198.0 0.0 2.7e-58 197.6 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme Acyl-CoA_dh_1 PF00441.24 EME71061.1 - 1.7e-27 96.5 7.8 4.1e-27 95.2 7.8 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 EME71061.1 - 5.3e-17 61.8 0.0 1.1e-16 60.7 0.0 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_N PF02771.16 EME71061.1 - 9.9e-14 52.0 0.1 2.7e-13 50.6 0.1 1.8 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.11 EME71061.1 - 3.6e-08 33.7 2.1 3.6e-08 33.7 2.1 2.9 3 1 0 3 3 3 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_C PF12806.7 EME71061.1 - 2.7e-06 27.6 5.5 6.8e-06 26.3 5.5 1.7 1 0 0 1 1 1 1 Acetyl-CoA dehydrogenase C-terminal like Bac_DNA_binding PF00216.21 EME71062.1 - 3.4e-33 113.7 0.1 3.7e-33 113.6 0.1 1.0 1 0 0 1 1 1 1 Bacterial DNA-binding protein HU-HIG PF18291.1 EME71062.1 - 5.7e-08 32.9 0.0 6.1e-08 32.8 0.0 1.1 1 0 0 1 1 1 1 HU domain fused to wHTH, Ig, or Glycine-rich motif HU-CCDC81_euk_2 PF18289.1 EME71062.1 - 0.0021 18.2 0.1 0.0031 17.6 0.1 1.2 1 0 0 1 1 1 1 CCDC81 eukaryotic HU domain 2 HU-CCDC81_bac_2 PF18175.1 EME71062.1 - 0.0061 16.4 0.0 0.0087 15.9 0.0 1.1 1 0 0 1 1 1 1 CCDC81-like prokaryotic HU domain 2 DUF2267 PF10025.9 EME71062.1 - 0.14 12.5 0.1 0.24 11.7 0.1 1.4 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2267) XdhC_C PF13478.6 EME71063.1 - 3.9e-36 124.3 0.6 7.4e-36 123.4 0.6 1.5 1 0 0 1 1 1 1 XdhC Rossmann domain XdhC_CoxI PF02625.16 EME71063.1 - 2.6e-20 72.4 7.9 2.7e-20 72.3 0.9 3.2 3 0 0 3 3 3 1 XdhC and CoxI family FAD_binding_5 PF00941.21 EME71064.1 - 1e-39 136.0 0.0 1.4e-39 135.6 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain in molybdopterin dehydrogenase CO_deh_flav_C PF03450.17 EME71064.1 - 2.1e-09 37.5 0.2 4.5e-09 36.4 0.2 1.6 1 0 0 1 1 1 1 CO dehydrogenase flavoprotein C-terminal domain Ald_Xan_dh_C2 PF02738.18 EME71065.1 - 5e-151 503.9 3.4 6e-151 503.6 3.4 1.1 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.22 EME71065.1 - 3.5e-32 111.0 0.2 8.2e-32 109.8 0.2 1.7 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Fer2_2 PF01799.20 EME71066.1 - 1.5e-27 95.4 0.2 1.5e-27 95.4 0.2 1.8 2 0 0 2 2 2 1 [2Fe-2S] binding domain Fer2 PF00111.27 EME71066.1 - 3.1e-08 33.4 0.4 3.1e-08 33.4 0.4 2.8 2 1 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.6 EME71066.1 - 7.8e-07 29.1 0.3 1.5e-06 28.2 0.3 1.6 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain MarR PF01047.22 EME71067.1 - 1.7e-13 50.3 0.0 2.7e-13 49.6 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 EME71067.1 - 2.3e-12 46.6 0.0 5.1e-12 45.5 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 EME71067.1 - 4.4e-10 39.9 0.0 7.4e-10 39.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain B-block_TFIIIC PF04182.12 EME71067.1 - 7e-07 29.3 0.0 3.4e-06 27.1 0.0 1.9 1 1 1 2 2 2 1 B-block binding subunit of TFIIIC TrmB PF01978.19 EME71067.1 - 1.6e-06 27.9 0.2 7.2e-06 25.8 0.1 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 EME71067.1 - 0.00011 21.7 0.1 0.00024 20.6 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_36 PF13730.6 EME71067.1 - 0.00012 22.0 0.0 0.00069 19.5 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 EME71067.1 - 0.00042 20.3 0.0 0.00094 19.1 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_34 PF13601.6 EME71067.1 - 0.00043 20.4 0.0 0.00069 19.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_11 PF08279.12 EME71067.1 - 0.0005 20.0 0.0 0.00092 19.1 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_29 PF13551.6 EME71067.1 - 0.00055 19.9 0.3 0.0016 18.4 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn helix SMC_ScpB PF04079.16 EME71067.1 - 0.00059 19.5 0.0 0.00074 19.2 0.0 1.1 1 0 0 1 1 1 1 Segregation and condensation complex subunit ScpB TFIIE_alpha PF02002.17 EME71067.1 - 0.0038 17.1 0.0 0.0051 16.6 0.0 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit GntR PF00392.21 EME71067.1 - 0.0052 16.4 0.1 0.012 15.2 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_IclR PF09339.10 EME71067.1 - 0.008 16.0 0.1 0.031 14.1 0.0 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain Fe_dep_repress PF01325.19 EME71067.1 - 0.0082 16.3 0.0 0.013 15.6 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Penicillinase_R PF03965.16 EME71067.1 - 0.027 14.8 0.0 0.046 14.1 0.0 1.5 1 0 0 1 1 1 0 Penicillinase repressor HTH_3 PF01381.22 EME71067.1 - 0.03 14.4 0.0 0.12 12.5 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix PadR PF03551.14 EME71067.1 - 0.032 14.2 0.0 0.054 13.5 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family hemP PF10636.9 EME71067.1 - 0.07 12.9 0.1 0.23 11.3 0.0 1.8 2 0 0 2 2 2 0 Hemin uptake protein hemP Rrf2 PF02082.20 EME71067.1 - 0.07 13.5 0.0 0.13 12.6 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator HTH_20 PF12840.7 EME71067.1 - 0.087 12.9 0.0 0.37 10.9 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain DUF3116 PF11313.8 EME71067.1 - 0.17 11.8 0.0 0.24 11.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3116) MerR-DNA-bind PF09278.11 EME71068.1 - 1.5e-18 67.1 1.0 2.7e-18 66.3 1.0 1.4 1 0 0 1 1 1 1 MerR, DNA binding MerR_1 PF13411.6 EME71068.1 - 1.1e-16 60.6 0.0 2.2e-16 59.7 0.0 1.4 1 0 0 1 1 1 1 MerR HTH family regulatory protein MerR PF00376.23 EME71068.1 - 1.2e-16 60.1 1.0 1.2e-16 60.1 1.0 2.0 2 0 0 2 2 2 1 MerR family regulatory protein HTH_31 PF13560.6 EME71068.1 - 0.012 15.9 2.4 0.017 15.5 0.1 2.1 2 1 0 2 2 2 0 Helix-turn-helix domain E1-E2_ATPase PF00122.20 EME71069.1 - 1.3e-55 187.7 1.9 1.3e-55 187.7 1.9 2.2 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.26 EME71069.1 - 1.7e-45 155.9 7.2 3.4e-45 154.9 7.2 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 EME71069.1 - 6e-11 42.6 0.0 1.4e-10 41.4 0.0 1.7 1 0 0 1 1 1 1 Heavy-metal-associated domain Hydrolase_3 PF08282.12 EME71069.1 - 0.00063 19.5 0.4 0.0013 18.5 0.4 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 EME71069.1 - 0.014 15.8 0.9 0.097 13.1 0.9 2.4 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase MCPsignal PF00015.21 EME71070.1 - 1.4e-33 116.1 52.9 2.8e-33 115.1 27.7 3.3 2 1 2 4 4 4 3 Methyl-accepting chemotaxis protein (MCP) signalling domain 4HB_MCP_1 PF12729.7 EME71070.1 - 2.7e-26 92.2 1.3 2.7e-26 92.2 1.3 3.9 3 2 1 4 4 4 1 Four helix bundle sensory module for signal transduction HAMP PF00672.25 EME71070.1 - 4.7e-08 33.3 0.7 4.7e-08 33.3 0.7 4.8 5 2 0 5 5 5 1 HAMP domain Laminin_I PF06008.14 EME71070.1 - 0.0038 17.0 8.3 0.0038 17.0 8.3 3.8 3 2 1 4 4 4 2 Laminin Domain I DUF1664 PF07889.12 EME71070.1 - 0.014 15.4 15.9 0.37 10.9 2.9 3.7 2 2 1 3 3 3 0 Protein of unknown function (DUF1664) DUF3937 PF13073.6 EME71070.1 - 0.18 12.0 0.1 0.41 10.8 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3937) Vps53_N PF04100.12 EME71070.1 - 0.22 10.4 12.6 0.46 9.4 3.0 2.4 2 0 0 2 2 2 0 Vps53-like, N-terminal Mur_ligase_C PF02875.21 EME71070.1 - 0.31 11.3 3.5 0.68 10.2 0.1 3.1 3 0 0 3 3 3 0 Mur ligase family, glutamate ligase domain COG5 PF10392.9 EME71070.1 - 0.9 9.7 5.0 1.1 9.4 0.7 3.1 2 1 0 2 2 2 0 Golgi transport complex subunit 5 DUF948 PF06103.11 EME71070.1 - 3.6 7.9 34.9 0.26 11.6 2.0 6.1 3 1 4 7 7 7 0 Bacterial protein of unknown function (DUF948) ArdA PF07275.11 EME71070.1 - 5.5 7.6 8.3 10 6.7 0.1 3.1 3 0 0 3 3 3 0 Antirestriction protein (ArdA) TMPIT PF07851.13 EME71070.1 - 6.5 5.9 7.4 13 5.0 1.5 2.6 2 0 0 2 2 2 0 TMPIT-like protein BPD_transp_2 PF02653.16 EME71071.1 - 5.2e-52 176.7 42.7 6.3e-52 176.4 42.7 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 EME71072.1 - 6.9e-51 173.0 26.2 6.9e-51 173.0 26.2 1.9 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component DUF3382 PF11862.8 EME71072.1 - 1.4e-10 41.3 5.0 1.4e-10 41.3 5.0 3.7 4 2 1 5 5 5 1 Domain of unknown function (DUF3382) ABC_tran PF00005.27 EME71073.1 - 1.5e-27 96.8 0.0 2e-27 96.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.8 EME71073.1 - 2.3e-10 40.1 0.6 4.8e-10 39.1 0.6 1.6 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_21 PF13304.6 EME71073.1 - 1.6e-07 31.4 0.2 7e-05 22.8 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 EME71073.1 - 9.6e-06 26.2 0.3 1.6e-05 25.5 0.3 1.2 1 0 0 1 1 1 1 AAA domain AAA_27 PF13514.6 EME71073.1 - 0.00027 20.6 0.0 0.00049 19.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 EME71073.1 - 0.00036 20.8 0.0 0.0089 16.3 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 EME71073.1 - 0.00071 19.3 0.0 0.0013 18.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 EME71073.1 - 0.0022 17.9 0.0 0.0038 17.2 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 EME71073.1 - 0.0023 18.3 0.1 0.0046 17.4 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 EME71073.1 - 0.006 16.1 0.0 0.012 15.0 0.0 1.5 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 EME71073.1 - 0.0062 16.3 0.0 0.053 13.2 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain MMR_HSR1 PF01926.23 EME71073.1 - 0.031 14.3 0.0 0.066 13.3 0.0 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_30 PF13604.6 EME71073.1 - 0.048 13.4 0.1 0.078 12.7 0.1 1.6 1 1 0 1 1 1 0 AAA domain FeoB_N PF02421.18 EME71073.1 - 0.06 12.9 0.1 0.11 12.0 0.1 1.4 1 0 0 1 1 1 0 Ferrous iron transport protein B DUF3584 PF12128.8 EME71073.1 - 0.23 8.9 0.1 0.31 8.5 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_13 PF13166.6 EME71073.1 - 0.25 10.0 0.0 0.29 9.7 0.0 1.1 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 EME71074.1 - 3e-30 105.5 0.0 4e-30 105.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 EME71074.1 - 4.3e-11 43.2 2.7 4.9e-06 26.6 0.2 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 EME71074.1 - 0.0012 19.2 0.1 0.0022 18.4 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 EME71074.1 - 0.0014 19.1 0.1 0.002 18.7 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 EME71074.1 - 0.0017 18.1 0.0 0.0038 16.9 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.6 EME71074.1 - 0.0034 17.0 1.6 0.018 14.6 0.6 2.4 2 1 0 2 2 2 1 AAA domain AAA_30 PF13604.6 EME71074.1 - 0.0065 16.2 0.4 0.021 14.5 0.4 1.8 1 1 0 1 1 1 1 AAA domain cobW PF02492.19 EME71074.1 - 0.013 15.1 0.1 0.019 14.5 0.1 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain SMC_N PF02463.19 EME71074.1 - 0.014 14.9 0.4 0.7 9.3 0.1 2.5 2 1 1 3 3 3 0 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 EME71074.1 - 0.016 15.1 0.0 0.032 14.1 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase MMR_HSR1 PF01926.23 EME71074.1 - 0.02 15.0 0.1 0.047 13.8 0.1 1.6 2 0 0 2 2 2 0 50S ribosome-binding GTPase NACHT PF05729.12 EME71074.1 - 0.031 14.2 0.1 0.062 13.2 0.1 1.5 1 0 0 1 1 1 0 NACHT domain AAA_33 PF13671.6 EME71074.1 - 0.039 14.1 0.1 0.067 13.4 0.1 1.5 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.22 EME71074.1 - 0.046 13.3 0.2 0.07 12.7 0.2 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_15 PF13175.6 EME71074.1 - 0.05 13.3 0.1 0.11 12.2 0.0 1.5 2 0 0 2 2 2 0 AAA ATPase domain AAA_14 PF13173.6 EME71074.1 - 0.11 12.5 0.0 0.79 9.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 EME71074.1 - 0.11 12.7 0.3 0.58 10.4 0.3 2.0 1 1 0 1 1 1 0 AAA domain DUF3584 PF12128.8 EME71074.1 - 0.11 10.0 0.2 0.15 9.6 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) VirC1 PF07015.11 EME71074.1 - 0.11 11.7 0.7 0.27 10.5 0.3 1.8 2 1 0 2 2 2 0 VirC1 protein TsaE PF02367.17 EME71074.1 - 0.14 12.2 0.0 0.26 11.3 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE NB-ARC PF00931.22 EME71074.1 - 0.14 11.3 0.1 0.31 10.2 0.1 1.5 2 0 0 2 2 2 0 NB-ARC domain SbcCD_C PF13558.6 EME71074.1 - 0.14 12.4 0.2 0.7 10.2 0.2 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit CbiA PF01656.23 EME71074.1 - 0.15 12.1 0.0 0.18 11.9 0.0 1.3 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_28 PF13521.6 EME71074.1 - 0.18 12.0 0.0 0.28 11.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain PIF1 PF05970.14 EME71074.1 - 0.22 10.7 0.1 0.43 9.7 0.0 1.4 2 0 0 2 2 2 0 PIF1-like helicase TrwB_AAD_bind PF10412.9 EME71074.1 - 0.23 10.4 0.2 0.32 9.9 0.2 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain GGDEF PF00990.21 EME71076.1 - 2.8e-42 144.2 0.1 9.9e-42 142.4 0.0 1.9 2 0 0 2 2 2 1 Diguanylate cyclase, GGDEF domain Response_reg PF00072.24 EME71076.1 - 4.2e-17 62.3 0.1 8.4e-17 61.4 0.1 1.5 1 0 0 1 1 1 1 Response regulator receiver domain AadA_C PF18280.1 EME71076.1 - 0.0046 17.1 0.0 0.14 12.3 0.0 2.6 2 0 0 2 2 2 1 Aminoglycoside adenyltransferase C-terminal domain TadZ_N PF16968.5 EME71076.1 - 0.053 13.2 0.0 0.12 12.1 0.0 1.5 1 0 0 1 1 1 0 Pilus assembly protein TadZ N-terminal LpoB PF13036.6 EME71077.1 - 4.3e-21 75.4 0.0 5.2e-21 75.1 0.0 1.1 1 0 0 1 1 1 1 Peptidoglycan-synthase activator LpoB DUF4136 PF13590.6 EME71077.1 - 0.025 15.2 0.2 0.069 13.7 0.2 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4136) TPR_2 PF07719.17 EME71078.1 - 1.1e-06 28.3 9.9 0.00042 20.2 0.9 3.6 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_1 PF00515.28 EME71078.1 - 0.0002 21.0 6.9 0.00086 19.0 1.5 2.6 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_16 PF13432.6 EME71078.1 - 0.00061 20.4 12.9 0.0063 17.1 0.6 3.6 2 1 1 3 3 3 2 Tetratricopeptide repeat TPR_8 PF13181.6 EME71078.1 - 0.0077 16.4 3.4 0.056 13.7 1.2 2.6 2 0 0 2 2 2 1 Tetratricopeptide repeat DUF357 PF04010.13 EME71078.1 - 0.025 14.6 0.5 0.085 12.9 0.5 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF357) TPR_17 PF13431.6 EME71078.1 - 0.082 13.3 0.7 0.32 11.5 0.7 2.0 1 0 0 1 1 1 0 Tetratricopeptide repeat TPR_12 PF13424.6 EME71078.1 - 0.12 12.7 8.3 1.7 9.0 1.2 2.8 2 1 0 2 2 2 0 Tetratricopeptide repeat TPR_6 PF13174.6 EME71078.1 - 0.14 12.9 7.2 0.14 12.8 1.7 2.9 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_14 PF13428.6 EME71078.1 - 0.39 11.7 11.4 5.1 8.2 0.7 3.1 2 1 0 2 2 2 0 Tetratricopeptide repeat TPR_10 PF13374.6 EME71078.1 - 1 9.3 5.3 1.1 9.2 0.9 2.5 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_7 PF13176.6 EME71078.1 - 3.4 7.9 5.1 2.2 8.5 0.5 2.6 2 0 0 2 2 2 0 Tetratricopeptide repeat HemY_N PF07219.13 EME71078.1 - 6.3 7.0 12.6 4.5 7.5 0.8 4.0 3 2 2 5 5 5 0 HemY protein N-terminus DUF1425 PF07233.12 EME71079.1 - 0.0052 16.7 0.0 0.0068 16.3 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1425) LcrR PF09621.10 EME71079.1 - 0.13 11.7 0.0 0.19 11.2 0.0 1.3 1 0 0 1 1 1 0 Type III secretion system regulator (LcrR) LPAM_1 PF08139.12 EME71079.1 - 0.16 12.5 1.0 0.28 11.8 1.0 1.4 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site DUF4189 PF13827.6 EME71081.1 - 8e-18 64.8 10.8 9.7e-18 64.5 10.8 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4189) Radical_SAM PF04055.21 EME71082.1 - 2.8e-17 63.6 0.0 4.7e-17 62.9 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.6 EME71082.1 - 1.5e-05 25.4 0.0 3.9e-05 24.1 0.0 1.8 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_14 PF13394.6 EME71082.1 - 4.9e-05 23.4 0.0 8.8e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 EME71082.1 - 0.0017 18.7 0.0 0.0033 17.7 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Semialdhyde_dh PF01118.24 EME71084.1 - 2.6e-28 98.9 0.0 4.7e-28 98.1 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 EME71084.1 - 1e-19 71.3 0.0 1.5e-19 70.8 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain Sacchrp_dh_NADP PF03435.18 EME71084.1 - 0.15 12.3 0.1 0.4 10.9 0.0 2.0 2 1 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain Hexapep PF00132.24 EME71085.1 - 8.5e-15 53.8 13.7 1.4e-05 24.6 0.4 3.9 2 1 1 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 EME71085.1 - 0.00089 19.0 0.5 0.00089 19.0 0.5 3.9 2 1 1 3 3 3 2 Hexapeptide repeat of succinyl-transferase AsmA PF05170.14 EME71088.1 - 1.4e-26 93.5 0.0 1.4e-18 67.0 0.0 3.3 2 1 1 3 3 3 2 AsmA family AsmA_2 PF13502.6 EME71088.1 - 3.9e-24 85.4 22.1 2.4e-15 56.7 3.2 5.6 4 2 2 6 6 6 4 AsmA-like C-terminal region PALP PF00291.25 EME71089.1 - 6.2e-46 157.1 0.3 7.5e-46 156.9 0.3 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme COX4_pro PF03626.14 EME71090.1 - 3.6e-10 40.1 0.7 5e-10 39.7 0.6 1.3 1 1 0 1 1 1 1 Prokaryotic Cytochrome C oxidase subunit IV DUF1129 PF06570.11 EME71090.1 - 0.031 13.8 0.3 0.033 13.7 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) FUSC-like PF12805.7 EME71090.1 - 0.29 10.2 2.7 0.33 10.0 2.7 1.3 1 1 0 1 1 1 0 FUSC-like inner membrane protein yccS SLATT_1 PF18181.1 EME71090.1 - 1.7 8.6 5.6 0.54 10.2 1.1 1.9 1 1 0 2 2 2 0 SMODS and SLOG-associating 2TM effector domain 1 DUF4231 PF14015.6 EME71090.1 - 1.7 9.1 4.0 0.6 10.6 0.8 1.9 2 1 0 2 2 2 0 Protein of unknown function (DUF4231) COX3 PF00510.18 EME71091.1 - 1.3e-15 58.0 7.4 2.5e-15 57.0 7.4 1.4 1 1 0 1 1 1 1 Cytochrome c oxidase subunit III Ldr_toxin PF13940.6 EME71091.1 - 0.068 13.2 5.4 0.15 12.2 0.4 2.7 2 0 0 2 2 2 0 Toxin Ldr, type I toxin-antitoxin system VWA PF00092.28 EME71092.1 - 7.9e-06 26.2 0.0 1.3e-05 25.5 0.0 1.3 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_2 PF13519.6 EME71092.1 - 1.5e-05 25.6 0.0 3.7e-05 24.3 0.0 1.7 1 0 0 1 1 1 1 von Willebrand factor type A domain DUF1194 PF06707.11 EME71092.1 - 0.099 11.8 0.0 0.27 10.4 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1194) AAA_5 PF07728.14 EME71093.1 - 2.3e-37 128.0 0.0 3.3e-37 127.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) CbbQ_C PF08406.10 EME71093.1 - 1.5e-29 102.1 1.9 1.9e-29 101.8 0.8 1.7 2 0 0 2 2 2 1 CbbQ/NirQ/NorQ C-terminal Mg_chelatase PF01078.21 EME71093.1 - 7.3e-07 28.8 0.0 0.00053 19.4 0.0 2.2 1 1 1 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_3 PF07726.11 EME71093.1 - 0.00011 22.1 0.0 0.00018 21.3 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 EME71093.1 - 0.00055 20.4 0.0 0.00092 19.6 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MCM PF00493.23 EME71093.1 - 0.0028 16.8 0.0 0.0051 15.9 0.0 1.3 1 0 0 1 1 1 1 MCM P-loop domain Sigma54_activat PF00158.26 EME71093.1 - 0.0034 17.1 0.0 0.011 15.4 0.0 1.7 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_6 PF12774.7 EME71093.1 - 0.0043 16.1 0.0 0.0065 15.5 0.0 1.2 1 0 0 1 1 1 1 Hydrolytic ATP binding site of dynein motor region AAA_16 PF13191.6 EME71093.1 - 0.012 16.1 0.0 0.023 15.1 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain AAA_7 PF12775.7 EME71093.1 - 0.017 14.7 0.0 0.026 14.0 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_22 PF13401.6 EME71093.1 - 0.017 15.4 0.0 0.035 14.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain TsaE PF02367.17 EME71093.1 - 0.034 14.1 0.0 0.064 13.3 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE RNA_helicase PF00910.22 EME71093.1 - 0.058 13.8 0.0 0.091 13.2 0.0 1.3 1 0 0 1 1 1 0 RNA helicase Rad17 PF03215.15 EME71093.1 - 0.084 12.8 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_14 PF13173.6 EME71093.1 - 0.087 12.9 0.0 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 EME71093.1 - 0.088 12.7 0.0 0.23 11.3 0.0 1.7 2 0 0 2 2 2 0 NACHT domain AAA_33 PF13671.6 EME71093.1 - 0.12 12.5 0.1 0.21 11.7 0.1 1.7 1 1 0 1 1 1 0 AAA domain ResIII PF04851.15 EME71093.1 - 0.14 12.1 0.0 0.29 11.1 0.0 1.4 2 0 0 2 2 1 0 Type III restriction enzyme, res subunit COX1 PF00115.20 EME71094.1 - 5.1e-82 276.0 68.9 6.2e-82 275.7 68.9 1.1 1 0 0 1 1 1 1 Cytochrome C and Quinol oxidase polypeptide I Phage_antitermQ PF06530.12 EME71094.1 - 0.05 13.5 0.0 0.089 12.7 0.0 1.3 1 0 0 1 1 1 0 Phage antitermination protein Q Cytochrom_C PF00034.21 EME71095.1 - 6.5e-07 30.4 0.0 9.7e-07 29.9 0.0 1.3 1 0 0 1 1 1 1 Cytochrome c Cytochrome_CBB3 PF13442.6 EME71095.1 - 3e-06 27.4 0.2 7.3e-06 26.2 0.2 1.6 1 1 0 1 1 1 1 Cytochrome C oxidase, cbb3-type, subunit III MCR PF18509.1 EME71095.1 - 6.7 6.4 6.9 0.37 10.4 1.5 1.7 2 0 0 2 2 2 0 Magnetochrome domain HTH_Crp_2 PF13545.6 EME71096.1 - 2.5e-13 49.8 0.7 6.4e-13 48.5 0.7 1.8 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain cNMP_binding PF00027.29 EME71096.1 - 7.6e-07 29.1 0.1 4e-06 26.8 0.0 2.1 2 0 0 2 2 2 1 Cyclic nucleotide-binding domain DUF2946 PF11162.8 EME71097.1 - 0.028 15.1 3.4 0.036 14.7 3.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2946) TTL PF03133.15 EME71098.1 - 0.00027 20.2 0.0 0.0058 15.8 0.0 2.0 2 0 0 2 2 2 1 Tubulin-tyrosine ligase family ATPgrasp_YheCD PF14398.6 EME71098.1 - 0.00044 19.6 0.0 0.0078 15.5 0.0 2.1 2 0 0 2 2 2 1 YheC/D like ATP-grasp ATP-grasp_3 PF02655.14 EME71098.1 - 0.0017 18.4 0.0 0.057 13.5 0.0 2.2 2 0 0 2 2 2 1 ATP-grasp domain ATPgrasp_ST PF14397.6 EME71098.1 - 0.017 14.4 0.0 0.081 12.2 0.0 1.8 2 0 0 2 2 2 0 Sugar-transfer associated ATP-grasp NosL PF05573.12 EME71099.1 - 7.4e-28 97.5 0.0 1.1e-27 97.0 0.0 1.2 1 0 0 1 1 1 1 NosL GPR15L PF15854.5 EME71099.1 - 0.11 12.7 0.0 0.18 12.1 0.0 1.2 1 0 0 1 1 1 0 G-protein coupled receptor ligand 15 NosL PF05573.12 EME71100.1 - 2.3e-07 31.2 0.1 3.8e-07 30.5 0.1 1.2 1 0 0 1 1 1 1 NosL TAT_signal PF10518.9 EME71100.1 - 0.068 13.1 0.6 0.16 11.9 0.6 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DsbD_2 PF13386.6 EME71101.1 - 1.4e-40 139.4 30.0 1.6e-40 139.2 30.0 1.0 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DsbD PF02683.15 EME71101.1 - 5.3e-07 29.7 12.6 8.3e-07 29.1 12.6 1.4 1 1 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region COPI_assoc PF08507.10 EME71101.1 - 3.2 7.8 8.3 0.39 10.8 2.0 2.4 2 0 0 2 2 2 0 COPI associated protein E1-E2_ATPase PF00122.20 EME71102.1 - 8.1e-52 175.4 1.8 1.5e-51 174.5 1.8 1.5 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.26 EME71102.1 - 2.1e-38 132.7 1.6 3.5e-38 132.0 1.6 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 EME71102.1 - 1.3e-11 44.7 0.0 2.9e-11 43.6 0.0 1.6 1 0 0 1 1 1 1 Heavy-metal-associated domain Hydrolase_3 PF08282.12 EME71102.1 - 2.5e-06 27.4 0.9 0.0006 19.6 0.3 2.2 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 EME71102.1 - 0.012 16.1 0.4 0.054 13.9 0.3 2.1 2 1 0 2 2 2 0 haloacid dehalogenase-like hydrolase CT_C_D PF02682.16 EME71102.1 - 0.067 12.9 0.2 0.26 11.0 0.0 2.1 2 0 0 2 2 2 0 Carboxyltransferase domain, subdomain C and D AviRa PF11599.8 EME71104.1 - 0.031 13.7 0.0 0.037 13.5 0.0 1.1 1 0 0 1 1 1 0 RRNA methyltransferase AviRa Mem_trans PF03547.18 EME71104.1 - 0.21 10.0 0.1 0.24 9.7 0.1 1.2 1 0 0 1 1 1 0 Membrane transport protein YtxH PF12732.7 EME71104.1 - 1.6 9.3 5.3 3.3 8.3 5.3 1.6 1 1 0 1 1 1 0 YtxH-like protein AhpC-TSA PF00578.21 EME71105.1 - 4.5e-27 94.4 0.0 5.3e-27 94.2 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 EME71105.1 - 9.1e-25 87.1 0.0 1.1e-24 86.9 0.0 1.0 1 0 0 1 1 1 1 Redoxin Thioredoxin_8 PF13905.6 EME71105.1 - 4.2e-11 43.0 0.0 5.4e-11 42.7 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin PF00085.20 EME71105.1 - 6.3e-08 32.6 0.1 2.5e-05 24.2 0.2 2.1 1 1 1 2 2 2 2 Thioredoxin Thioredoxin_2 PF13098.6 EME71105.1 - 2e-06 28.2 0.0 3.3e-06 27.5 0.0 1.4 1 1 0 1 1 1 1 Thioredoxin-like domain GSHPx PF00255.19 EME71105.1 - 0.012 15.1 0.0 0.019 14.5 0.0 1.2 1 0 0 1 1 1 0 Glutathione peroxidase AhpC-TSA_2 PF13911.6 EME71105.1 - 0.024 14.7 0.0 0.035 14.2 0.0 1.3 1 0 0 1 1 1 0 AhpC/TSA antioxidant enzyme DSBA PF01323.20 EME71105.1 - 0.28 10.9 1.1 0.44 10.3 0.1 1.7 1 1 1 2 2 2 0 DSBA-like thioredoxin domain DUF5316 PF17247.2 EME71106.1 - 0.22 11.6 0.1 0.22 11.6 0.1 3.2 4 0 0 4 4 4 0 Family of unknown function (DUF5316) DUF975 PF06161.11 EME71106.1 - 1.8 8.3 5.8 1.5 8.6 2.6 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF975) ABC_tran PF00005.27 EME71107.1 - 2.7e-28 99.2 0.0 3.8e-28 98.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 EME71107.1 - 9e-09 35.5 0.0 0.00068 19.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 EME71107.1 - 0.0011 18.6 0.3 0.0037 17.0 0.1 1.9 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_33 PF13671.6 EME71107.1 - 0.0013 18.9 0.1 0.0048 17.1 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 EME71107.1 - 0.0028 17.4 1.7 0.081 12.6 0.1 2.2 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 EME71107.1 - 0.0047 17.3 0.4 0.0096 16.3 0.4 1.8 1 1 0 1 1 1 1 AAA ATPase domain NTPase_1 PF03266.15 EME71107.1 - 0.0048 16.8 0.5 0.94 9.4 0.0 2.2 2 0 0 2 2 2 1 NTPase RsgA_GTPase PF03193.16 EME71107.1 - 0.011 15.7 0.1 0.02 14.8 0.1 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_23 PF13476.6 EME71107.1 - 0.014 15.9 0.0 0.022 15.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain SMC_N PF02463.19 EME71107.1 - 0.024 14.1 0.0 2.8 7.3 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_25 PF13481.6 EME71107.1 - 0.083 12.5 1.0 0.16 11.5 0.1 1.8 2 1 0 2 2 2 0 AAA domain cobW PF02492.19 EME71107.1 - 0.085 12.4 0.8 0.15 11.6 0.3 1.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain CbiA PF01656.23 EME71107.1 - 0.14 12.2 0.0 0.21 11.6 0.0 1.6 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_24 PF13479.6 EME71107.1 - 0.23 11.2 0.5 4.5 6.9 0.2 2.2 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 EME71107.1 - 0.24 11.3 1.1 0.25 11.3 0.1 1.5 2 0 0 2 2 2 0 NACHT domain AAA_22 PF13401.6 EME71107.1 - 0.39 11.0 2.2 0.75 10.1 0.3 2.1 2 1 0 2 2 2 0 AAA domain PEPCK_ATP PF01293.20 EME71107.1 - 0.39 9.3 0.7 0.71 8.5 0.7 1.3 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxykinase FtsX PF02687.21 EME71108.1 - 1.4e-13 51.1 4.7 1.5e-13 51.0 0.3 2.6 3 0 0 3 3 3 1 FtsX-like permease family DUF2946 PF11162.8 EME71111.1 - 0.00011 22.9 10.4 0.00013 22.6 10.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2946) HTH_36 PF13730.6 EME71113.1 - 2.5e-14 53.0 0.0 3.6e-14 52.5 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain RP-C PF03428.13 EME71113.1 - 0.021 14.5 0.0 0.023 14.3 0.0 1.2 1 0 0 1 1 1 0 Replication protein C N-terminal domain GntR PF00392.21 EME71113.1 - 0.026 14.2 0.0 0.043 13.5 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Pkinase PF00069.25 EME71114.1 - 2.8e-07 30.2 0.0 1e-06 28.4 0.0 1.7 2 0 0 2 2 2 1 Protein kinase domain SHOCT PF09851.9 EME71114.1 - 2.8e-05 23.7 0.2 6.1e-05 22.6 0.2 1.6 1 0 0 1 1 1 1 Short C-terminal domain APH PF01636.23 EME71114.1 - 0.00011 22.3 0.4 0.026 14.4 0.3 2.3 1 1 1 2 2 2 2 Phosphotransferase enzyme family GvpG PF05120.12 EME71114.1 - 0.12 12.4 0.1 0.41 10.7 0.0 1.9 2 0 0 2 2 2 0 Gas vesicle protein G Kinase-like PF14531.6 EME71114.1 - 0.21 10.8 0.0 0.35 10.1 0.0 1.2 1 0 0 1 1 1 0 Kinase-like VWA_2 PF13519.6 EME71115.1 - 0.0087 16.7 0.0 0.079 13.6 0.0 2.2 2 0 0 2 2 2 1 von Willebrand factor type A domain VapB_antitoxin PF09957.9 EME71115.1 - 0.042 13.8 0.6 0.15 12.0 0.1 2.1 2 1 0 2 2 2 0 Bacterial antitoxin of type II TA system, VapB FeoB_N PF02421.18 EME71119.1 - 6.3e-53 178.5 0.0 9.5e-53 177.9 0.0 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.14 EME71119.1 - 8.3e-44 148.4 14.6 2.3e-30 105.1 0.4 2.9 2 0 0 2 2 2 2 Nucleoside recognition FeoB_C PF07664.12 EME71119.1 - 3.1e-18 65.2 0.6 3.1e-18 65.2 0.6 2.6 2 0 0 2 2 2 1 Ferrous iron transport protein B C terminus FeoB_Cyto PF17910.1 EME71119.1 - 6.8e-17 61.8 0.6 1.5e-16 60.7 0.2 1.9 2 0 0 2 2 2 1 FeoB cytosolic helical domain MMR_HSR1 PF01926.23 EME71119.1 - 1.2e-16 60.8 0.0 2.4e-16 59.8 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase AIG1 PF04548.16 EME71119.1 - 7.9e-05 22.1 0.1 0.00017 21.0 0.0 1.6 2 0 0 2 2 2 1 AIG1 family Dynamin_N PF00350.23 EME71119.1 - 0.0044 17.1 0.1 1.4 9.0 0.0 2.5 1 1 1 2 2 2 2 Dynamin family SRPRB PF09439.10 EME71119.1 - 0.018 14.5 0.0 0.03 13.7 0.0 1.3 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit FeoA PF04023.14 EME71120.1 - 3.9e-14 52.7 0.1 5.2e-14 52.3 0.1 1.2 1 0 0 1 1 1 1 FeoA domain OprB PF04966.12 EME71121.1 - 2.4e-68 231.3 6.4 3e-68 231.0 6.4 1.0 1 0 0 1 1 1 1 Carbohydrate-selective porin, OprB family Pkinase PF00069.25 EME71122.1 - 1.9e-09 37.3 0.0 2.9e-09 36.7 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain APH PF01636.23 EME71122.1 - 0.0019 18.2 1.3 0.0059 16.6 0.4 1.9 1 1 1 2 2 2 1 Phosphotransferase enzyme family RIO1 PF01163.22 EME71122.1 - 0.11 12.1 0.0 0.92 9.1 0.0 2.0 2 0 0 2 2 2 0 RIO1 family Kinase-like PF14531.6 EME71122.1 - 0.2 10.9 0.0 0.29 10.4 0.0 1.2 1 0 0 1 1 1 0 Kinase-like SpoIIE PF07228.12 EME71123.1 - 0.0049 16.8 0.0 0.02 14.8 0.0 1.9 1 1 0 1 1 1 1 Stage II sporulation protein E (SpoIIE) PP2C_2 PF13672.6 EME71123.1 - 0.013 15.2 0.0 0.066 12.8 0.0 2.0 1 1 0 1 1 1 0 Protein phosphatase 2C VWA_2 PF13519.6 EME71124.1 - 0.11 13.1 0.0 2.1 9.0 0.0 2.3 2 0 0 2 2 2 0 von Willebrand factor type A domain DUF2975 PF11188.8 EME71125.1 - 0.016 15.1 2.8 0.039 13.8 2.8 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2975) DASH_Dad4 PF08650.10 EME71125.1 - 0.022 14.7 0.5 0.76 9.8 0.1 2.8 2 1 1 3 3 3 0 DASH complex subunit Dad4 Wzy_C PF04932.15 EME71125.1 - 0.028 14.1 0.4 0.035 13.7 0.4 1.2 1 0 0 1 1 1 0 O-Antigen ligase CARD PF00619.21 EME71125.1 - 0.067 13.2 0.3 0.48 10.5 0.3 2.5 1 1 0 1 1 1 0 Caspase recruitment domain ImpA_N PF06812.12 EME71125.1 - 0.11 12.6 0.9 4.4 7.4 0.1 2.5 2 0 0 2 2 2 0 ImpA, N-terminal, type VI secretion system DUF3561 PF12084.8 EME71125.1 - 0.13 12.3 1.7 0.22 11.5 1.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3561) Talin_middle PF09141.10 EME71125.1 - 0.34 10.9 13.8 0.1 12.6 2.2 3.0 2 1 1 3 3 3 0 Talin, middle domain MCR PF18509.1 EME71126.1 - 2.9e-26 90.7 13.6 2.7e-13 49.2 4.8 2.6 2 0 0 2 2 2 2 Magnetochrome domain Nudix_N_2 PF14803.6 EME71126.1 - 0.012 15.6 2.5 0.75 9.8 0.2 2.4 2 0 0 2 2 2 0 Nudix N-terminal DUF1924 PF09086.11 EME71126.1 - 0.048 14.0 0.9 3.9 7.9 0.2 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1924) CCP_MauG PF03150.14 EME71126.1 - 0.054 14.1 0.4 2.1 9.0 0.0 2.2 1 1 1 2 2 2 0 Di-haem cytochrome c peroxidase Paired_CXXCH_1 PF09699.10 EME71126.1 - 0.16 11.7 1.1 17 5.3 0.1 2.3 2 0 0 2 2 2 0 Doubled CXXCH motif (Paired_CXXCH_1) Cytochrome_CBB3 PF13442.6 EME71126.1 - 0.43 10.9 4.4 6.4 7.2 0.4 2.7 1 1 2 3 3 3 0 Cytochrome C oxidase, cbb3-type, subunit III Cytochrom_C PF00034.21 EME71126.1 - 1.9 9.7 4.7 4.1 8.6 0.4 2.3 1 1 1 2 2 2 0 Cytochrome c MFS_1 PF07690.16 EME71127.1 - 1.3e-21 76.9 60.9 1.2e-10 40.9 21.6 2.3 1 1 1 2 2 2 2 Major Facilitator Superfamily Ferric_reduct PF01794.19 EME71127.1 - 3e-15 56.5 4.4 3e-15 56.5 4.4 3.2 2 1 0 2 2 2 1 Ferric reductase like transmembrane component OATP PF03137.20 EME71127.1 - 0.0039 15.6 5.0 0.63 8.3 0.1 2.5 2 0 0 2 2 2 2 Organic Anion Transporter Polypeptide (OATP) family DUF1029 PF06269.12 EME71127.1 - 3.6 7.8 6.1 45 4.3 0.4 4.0 3 0 0 3 3 3 0 Protein of unknown function (DUF1029) YfhO PF09586.10 EME71127.1 - 7 4.7 16.4 0.028 12.7 2.0 2.2 2 0 0 2 2 2 0 Bacterial membrane protein YfhO Tubulin PF00091.25 EME71128.1 - 3e-40 138.5 0.7 4.6e-40 137.9 0.7 1.3 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 EME71128.1 - 7.7e-36 122.3 4.5 7.7e-36 122.3 4.5 2.1 2 0 0 2 2 2 1 FtsZ family, C-terminal domain Tubulin_2 PF13809.6 EME71128.1 - 0.0027 16.9 7.7 0.0042 16.3 2.1 2.6 1 1 1 2 2 2 2 Tubulin like UPF0060 PF02694.15 EME71129.1 - 1e-30 106.1 6.1 1.1e-30 106.0 6.1 1.0 1 0 0 1 1 1 1 Uncharacterised BCR, YnfA/UPF0060 family EamA PF00892.20 EME71129.1 - 0.0025 18.0 1.8 0.0095 16.1 0.1 2.1 1 1 2 3 3 3 2 EamA-like transporter family Cation_efflux PF01545.21 EME71130.1 - 1e-36 126.6 12.3 1.5e-36 126.0 12.3 1.2 1 0 0 1 1 1 1 Cation efflux family 7TM_GPCR_Srw PF10324.9 EME71130.1 - 0.03 13.6 0.0 0.054 12.8 0.0 1.4 1 0 0 1 1 1 0 Serpentine type 7TM GPCR chemoreceptor Srw Metal_resist PF13801.6 EME71130.1 - 0.046 13.9 3.2 0.064 13.5 0.2 2.6 1 1 1 2 2 2 0 Heavy-metal resistance E1-E2_ATPase PF00122.20 EME71131.1 - 1e-45 155.5 0.8 1e-45 155.5 0.8 1.8 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.26 EME71131.1 - 1.8e-36 126.5 3.9 2.6e-36 125.9 1.9 2.1 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 EME71131.1 - 0.013 15.9 0.3 0.21 12.0 0.2 2.7 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 EME71131.1 - 0.16 11.7 0.8 0.26 11.0 0.8 1.2 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase MerR-DNA-bind PF09278.11 EME71132.1 - 7.5e-21 74.4 3.3 1.2e-20 73.7 3.3 1.4 1 0 0 1 1 1 1 MerR, DNA binding MerR_1 PF13411.6 EME71132.1 - 2e-19 69.4 0.0 3.1e-19 68.8 0.0 1.3 1 0 0 1 1 1 1 MerR HTH family regulatory protein MerR PF00376.23 EME71132.1 - 6.6e-15 54.6 0.4 1.3e-14 53.6 0.4 1.6 1 0 0 1 1 1 1 MerR family regulatory protein FUR PF01475.19 EME71133.1 - 7.3e-40 135.9 0.2 8.3e-40 135.7 0.2 1.0 1 0 0 1 1 1 1 Ferric uptake regulator family RepL PF05732.11 EME71133.1 - 0.0049 16.3 0.0 0.15 11.5 0.0 2.1 2 0 0 2 2 2 2 Firmicute plasmid replication protein (RepL) Fib_alpha PF08702.10 EME71135.1 - 0.13 12.4 0.8 0.24 11.6 0.2 1.8 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family Peptidase_U32 PF01136.19 EME71136.1 - 6.2e-18 64.8 0.0 8e-18 64.4 0.0 1.2 1 0 0 1 1 1 1 Peptidase family U32 Peptidase_U32 PF01136.19 EME71137.1 - 1.7e-62 210.6 0.0 2.3e-62 210.2 0.0 1.1 1 0 0 1 1 1 1 Peptidase family U32 SCP2 PF02036.17 EME71138.1 - 1.8e-10 41.2 0.0 2.9e-10 40.5 0.0 1.4 1 0 0 1 1 1 1 SCP-2 sterol transfer family cNMP_binding PF00027.29 EME71139.1 - 1.9e-22 79.1 0.1 7.2e-22 77.3 0.0 1.9 2 0 0 2 2 2 1 Cyclic nucleotide-binding domain Response_reg PF00072.24 EME71139.1 - 3.4e-20 72.3 0.0 5.8e-20 71.5 0.0 1.4 1 0 0 1 1 1 1 Response regulator receiver domain DnaJ PF00226.31 EME71140.1 - 3.2e-18 65.6 0.0 4.8e-18 65.1 0.0 1.3 1 0 0 1 1 1 1 DnaJ domain SH3_3 PF08239.11 EME71140.1 - 7.5e-06 26.1 0.0 1.7e-05 25.0 0.0 1.6 1 0 0 1 1 1 1 Bacterial SH3 domain CbiA PF01656.23 EME71142.1 - 3.6e-16 59.4 0.0 5.1e-16 58.9 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 EME71142.1 - 1.9e-13 50.5 2.2 5.5e-11 42.4 2.2 2.3 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase AAA_31 PF13614.6 EME71142.1 - 8.4e-11 42.1 0.0 1.9e-10 40.9 0.0 1.6 1 1 0 1 1 1 1 AAA domain CBP_BcsQ PF06564.12 EME71142.1 - 2.5e-10 40.3 0.0 1.5e-09 37.7 0.0 1.9 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ ArsA_ATPase PF02374.15 EME71142.1 - 3e-05 23.4 0.3 0.00066 19.0 0.4 2.2 2 0 0 2 2 2 1 Anion-transporting ATPase Fer4_NifH PF00142.18 EME71142.1 - 0.0007 19.1 0.6 0.0024 17.3 0.1 1.9 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family VirC1 PF07015.11 EME71142.1 - 0.0013 18.1 0.1 0.0027 17.0 0.1 1.5 1 0 0 1 1 1 1 VirC1 protein IstB_IS21 PF01695.17 EME71142.1 - 0.0024 17.6 0.2 0.0042 16.8 0.2 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein MipZ PF09140.11 EME71142.1 - 0.022 14.0 0.2 0.045 13.0 0.2 1.5 1 0 0 1 1 1 0 ATPase MipZ APS_kinase PF01583.20 EME71142.1 - 0.023 14.6 0.5 0.21 11.5 0.1 2.2 2 0 0 2 2 2 0 Adenylylsulphate kinase AAA_25 PF13481.6 EME71142.1 - 0.028 14.0 1.4 0.085 12.4 0.1 2.3 3 0 0 3 3 3 0 AAA domain CLP1_P PF16575.5 EME71142.1 - 0.031 14.1 0.1 0.39 10.5 0.0 2.1 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop SRP54 PF00448.22 EME71143.1 - 3.7e-23 82.2 0.0 5.8e-23 81.5 0.0 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain IstB_IS21 PF01695.17 EME71143.1 - 2.8e-05 23.9 0.1 0.00079 19.2 0.0 2.6 2 1 0 2 2 2 1 IstB-like ATP binding protein AAA_16 PF13191.6 EME71143.1 - 0.0011 19.3 0.5 0.0043 17.4 0.1 2.2 2 1 0 2 2 2 1 AAA ATPase domain AAA_33 PF13671.6 EME71143.1 - 0.016 15.4 0.0 0.033 14.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain CLP1_P PF16575.5 EME71143.1 - 0.021 14.7 0.0 2.5 7.9 0.0 2.3 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_25 PF13481.6 EME71143.1 - 0.022 14.3 0.7 0.63 9.6 0.7 2.7 1 1 0 1 1 1 0 AAA domain AAA_7 PF12775.7 EME71143.1 - 0.038 13.5 0.0 0.068 12.7 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_5 PF07728.14 EME71143.1 - 0.083 12.9 0.0 0.2 11.7 0.0 1.7 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) RsgA_GTPase PF03193.16 EME71143.1 - 0.11 12.3 0.0 0.64 9.9 0.0 2.2 1 1 1 2 2 2 0 RsgA GTPase ABC_tran PF00005.27 EME71143.1 - 0.11 13.0 0.0 0.26 11.8 0.0 1.5 1 0 0 1 1 1 0 ABC transporter DAP3 PF10236.9 EME71143.1 - 0.22 10.6 0.0 0.7 9.0 0.0 1.7 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 FHIPEP PF00771.20 EME71144.1 - 3.1e-264 878.5 5.5 3.7e-264 878.2 5.5 1.0 1 0 0 1 1 1 1 FHIPEP family Competence PF03772.16 EME71144.1 - 0.00095 18.5 12.5 0.002 17.4 12.5 1.5 1 0 0 1 1 1 1 Competence protein DFF-C PF09033.10 EME71144.1 - 0.041 13.8 0.2 0.077 12.9 0.2 1.4 1 0 0 1 1 1 0 DNA Fragmentation factor 45kDa, C terminal domain Sigma54_activat PF00158.26 EME71145.1 - 4.3e-71 238.0 0.2 6.5e-71 237.5 0.2 1.3 1 0 0 1 1 1 1 Sigma-54 interaction domain Sigma54_activ_2 PF14532.6 EME71145.1 - 8.4e-21 74.5 0.0 2.8e-20 72.8 0.0 1.8 1 1 0 1 1 1 1 Sigma-54 interaction domain HTH_8 PF02954.19 EME71145.1 - 6.9e-16 57.8 0.0 2.8e-15 55.8 0.0 2.2 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family AAA_5 PF07728.14 EME71145.1 - 8.1e-08 32.4 0.1 1.3e-07 31.6 0.1 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Response_reg PF00072.24 EME71145.1 - 5.8e-06 26.5 0.1 1.8e-05 24.8 0.1 1.9 1 1 0 1 1 1 1 Response regulator receiver domain AAA PF00004.29 EME71145.1 - 7.2e-06 26.5 0.2 2.6e-05 24.6 0.0 2.1 3 0 0 3 3 1 1 ATPase family associated with various cellular activities (AAA) AAA_3 PF07726.11 EME71145.1 - 6e-05 22.9 0.0 0.00012 22.0 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 EME71145.1 - 0.0016 18.2 0.1 0.0044 16.8 0.1 1.7 1 0 0 1 1 1 1 AAA domain HTH_50 PF18024.1 EME71145.1 - 0.0032 17.0 0.0 0.012 15.3 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain Mg_chelatase PF01078.21 EME71145.1 - 0.0044 16.4 0.0 1.3 8.3 0.0 2.4 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI HTH_28 PF13518.6 EME71145.1 - 0.0053 16.9 0.0 0.016 15.3 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 EME71145.1 - 0.007 15.8 0.0 0.017 14.5 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 MCM PF00493.23 EME71145.1 - 0.0075 15.4 0.1 0.02 14.0 0.1 1.5 1 1 0 1 1 1 1 MCM P-loop domain AAA_19 PF13245.6 EME71145.1 - 0.011 16.1 0.0 0.4 11.0 0.0 2.4 2 0 0 2 2 2 0 AAA domain ATPase PF06745.13 EME71145.1 - 0.02 14.2 0.1 0.084 12.2 0.0 2.0 2 0 0 2 2 2 0 KaiC AAA_22 PF13401.6 EME71145.1 - 0.029 14.6 0.0 0.09 13.0 0.0 1.8 2 0 0 2 2 1 0 AAA domain AAA_2 PF07724.14 EME71145.1 - 0.037 14.1 0.0 0.077 13.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) HTH_23 PF13384.6 EME71145.1 - 0.047 13.5 0.0 0.2 11.5 0.0 2.1 2 0 0 2 2 2 0 Homeodomain-like domain AAA_16 PF13191.6 EME71145.1 - 0.048 14.0 0.1 0.12 12.7 0.1 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA_7 PF12775.7 EME71145.1 - 0.057 12.9 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region ADH_zinc_N PF00107.26 EME71145.1 - 0.06 13.3 3.0 1.8 8.5 0.0 2.6 2 1 1 3 3 3 0 Zinc-binding dehydrogenase HTH_29 PF13551.6 EME71145.1 - 0.082 12.9 0.0 0.21 11.6 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn helix FliMN_C PF01052.20 EME71146.1 - 2.4e-25 88.3 3.0 3e-25 88.0 3.0 1.1 1 0 0 1 1 1 1 Type III flagellar switch regulator (C-ring) FliN C-term DUF1839 PF08893.10 EME71146.1 - 0.16 11.1 0.0 0.27 10.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1839) FliH PF02108.16 EME71147.1 - 4.6e-11 42.9 2.5 6.3e-11 42.4 1.8 1.6 2 0 0 2 2 2 1 Flagellar assembly protein FliH T6SS_VasJ PF16989.5 EME71147.1 - 0.01 15.3 0.7 0.015 14.8 0.7 1.2 1 0 0 1 1 1 0 Type VI secretion, EvfE, EvfF, ImpA, BimE, VC_A0119, VasJ TetR_C_15 PF17918.1 EME71147.1 - 0.12 13.1 6.3 0.28 11.9 5.5 2.1 1 1 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain FliG_C PF01706.16 EME71148.1 - 9.8e-42 141.5 13.6 3.1e-39 133.5 3.5 4.0 2 1 1 4 4 4 2 FliG C-terminal domain FliG_N PF14842.6 EME71148.1 - 2.5e-33 114.7 10.0 1.1e-25 90.2 0.0 3.7 2 1 2 4 4 4 2 FliG N-terminal domain FliG_M PF14841.6 EME71148.1 - 1.2e-30 105.5 1.6 3.4e-24 84.9 0.6 3.1 3 0 0 3 3 3 2 FliG middle domain MgtE_N PF03448.17 EME71148.1 - 2.5e-08 34.4 9.5 0.00017 22.2 1.9 5.2 3 1 1 4 4 4 2 MgtE intracellular N domain STAS PF01740.21 EME71148.1 - 0.0077 15.9 0.1 0.02 14.5 0.0 1.7 2 0 0 2 2 2 1 STAS domain IFT81_CH PF18383.1 EME71148.1 - 0.017 15.3 0.2 0.037 14.3 0.2 1.5 1 0 0 1 1 1 0 Intraflagellar transport 81 calponin homology domain STAS_2 PF13466.6 EME71148.1 - 0.053 13.9 0.2 0.19 12.1 0.0 2.0 2 0 0 2 2 2 0 STAS domain AAA_16 PF13191.6 EME71148.1 - 0.09 13.2 0.2 0.21 12.0 0.2 1.6 1 0 0 1 1 1 0 AAA ATPase domain YscJ_FliF PF01514.17 EME71149.1 - 2.1e-63 213.5 0.0 6e-63 212.0 0.0 1.7 1 0 0 1 1 1 1 Secretory protein of YscJ/FliF family YscJ_FliF_C PF08345.11 EME71149.1 - 5.7e-40 137.1 10.3 5.7e-40 137.1 10.3 2.0 2 0 0 2 2 2 1 Flagellar M-ring protein C-terminal Flg_bbr_C PF06429.13 EME71150.1 - 8.2e-18 64.3 1.1 3.3e-17 62.4 1.1 2.2 1 0 0 1 1 1 1 Flagellar basal body rod FlgEFG protein C-terminal Flg_bb_rod PF00460.20 EME71150.1 - 2e-07 30.8 0.5 9.2e-07 28.7 0.5 2.3 1 0 0 1 1 1 1 Flagella basal body rod protein FlaE PF07559.14 EME71150.1 - 0.056 14.0 42.5 1.1e+02 3.3 33.0 4.7 2 2 0 2 2 2 0 Flagellar basal body protein FlaE PilX PF13681.6 EME71150.1 - 0.14 12.6 5.4 0.065 13.6 0.8 2.9 3 0 0 3 3 3 0 Type IV pilus assembly protein PilX C-term FlgD PF03963.14 EME71151.1 - 5e-22 78.0 7.8 5e-22 78.0 7.8 2.6 2 0 0 2 2 2 1 Flagellar hook capping protein - N-terminal region FlgD_ig PF13860.6 EME71151.1 - 1.2e-19 69.9 0.7 4.2e-19 68.2 0.7 1.9 1 0 0 1 1 1 1 FlgD Ig-like domain FLgD_tudor PF13861.6 EME71151.1 - 1e-09 38.5 0.0 7.7e-09 35.7 0.0 2.4 2 1 1 3 3 3 1 FlgD Tudor-like domain DUF2271 PF10029.9 EME71151.1 - 0.00064 19.4 0.3 0.0014 18.2 0.3 1.7 1 0 0 1 1 1 1 Predicted periplasmic protein (DUF2271) CSN7a_helixI PF18392.1 EME71151.1 - 3.5 7.6 5.6 7.8 6.5 0.2 2.4 2 0 0 2 2 2 0 COP9 signalosome complex subunit 7a helix I domain Flg_hook PF02120.16 EME71152.1 - 7.2e-19 67.5 3.2 1.8e-18 66.2 0.3 2.9 2 1 1 3 3 3 1 Flagellar hook-length control protein FliK Pox_A_type_inc PF04508.12 EME71152.1 - 0.24 11.3 0.2 0.53 10.2 0.2 1.5 1 0 0 1 1 1 0 Viral A-type inclusion protein repeat SNF5 PF04855.12 EME71152.1 - 1.5 8.5 6.0 2 8.2 0.2 2.6 3 0 0 3 3 3 0 SNF5 / SMARCB1 / INI1 DUF3592 PF12158.8 EME71153.1 - 0.27 11.3 0.1 0.27 11.3 0.1 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3592) MoCF_biosynth PF00994.24 EME71154.1 - 8.5e-33 113.0 0.1 1.2e-32 112.6 0.1 1.1 1 0 0 1 1 1 1 Probable molybdopterin binding domain Acetyltransf_3 PF13302.7 EME71155.1 - 1.5e-32 113.1 0.0 2.7e-32 112.3 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain NUDIX_4 PF14815.6 EME71155.1 - 7.3e-20 71.0 0.0 1.6e-19 69.9 0.0 1.5 1 0 0 1 1 1 1 NUDIX domain NUDIX PF00293.28 EME71155.1 - 1.8e-19 70.0 0.0 3e-19 69.4 0.0 1.3 1 0 0 1 1 1 1 NUDIX domain Acetyltransf_1 PF00583.25 EME71155.1 - 7.5e-07 29.4 0.0 1.2e-06 28.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family ArgJ PF01960.18 EME71156.1 - 2.2e-135 451.2 10.1 2.4e-135 451.1 10.1 1.0 1 0 0 1 1 1 1 ArgJ family Rotamase_3 PF13616.6 EME71157.1 - 7.9e-23 81.2 0.1 2.1e-22 79.8 0.0 1.7 1 1 0 1 1 1 1 PPIC-type PPIASE domain Rotamase PF00639.21 EME71157.1 - 2.5e-21 76.4 1.3 3.3e-21 76.0 0.0 1.9 3 0 0 3 3 3 1 PPIC-type PPIASE domain Rotamase_2 PF13145.6 EME71157.1 - 3.9e-16 60.0 0.1 3.9e-16 60.0 0.1 1.8 2 0 0 2 2 2 1 PPIC-type PPIASE domain Gp_dh_C PF02800.20 EME71158.1 - 1.1e-67 226.5 0.0 1.6e-67 226.0 0.0 1.2 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Gp_dh_N PF00044.24 EME71158.1 - 1.9e-38 130.8 0.0 3.6e-38 129.9 0.0 1.5 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 EME71158.1 - 0.013 16.3 0.2 0.11 13.4 0.2 2.1 1 1 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold DapB_N PF01113.20 EME71158.1 - 0.05 13.7 0.3 0.26 11.4 0.2 2.4 2 1 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus NAD_binding_3 PF03447.16 EME71158.1 - 0.054 14.2 0.2 0.41 11.3 0.2 2.2 1 1 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain PGK PF00162.19 EME71159.1 - 1.2e-147 491.8 0.6 1.4e-147 491.6 0.6 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase TP_methylase PF00590.20 EME71160.1 - 2.3e-42 145.3 1.2 2.7e-42 145.1 1.2 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Radical_SAM PF04055.21 EME71160.1 - 0.0047 17.3 0.0 0.0074 16.7 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily AP_endonuc_2 PF01261.24 EME71160.1 - 0.11 11.9 0.0 0.21 11.0 0.0 1.6 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel TP_methylase PF00590.20 EME71161.1 - 2.4e-42 145.3 4.1 2.8e-42 145.1 4.1 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases MEDS PF14417.6 EME71161.1 - 0.062 13.1 0.1 0.41 10.5 0.0 1.9 2 0 0 2 2 2 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain Radical_SAM PF04055.21 EME71161.1 - 0.07 13.5 0.0 0.16 12.3 0.0 1.6 1 1 0 1 1 1 0 Radical SAM superfamily DUF1344 PF07076.11 EME71161.1 - 0.096 12.6 0.0 0.18 11.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1344) DsbD_2 PF13386.6 EME71162.1 - 2.1e-36 125.8 30.1 2.6e-36 125.4 30.1 1.1 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region SCO1-SenC PF02630.14 EME71163.1 - 1.7e-52 176.9 0.0 2e-52 176.6 0.0 1.1 1 0 0 1 1 1 1 SCO1/SenC AhpC-TSA PF00578.21 EME71163.1 - 3.1e-08 33.6 0.0 4.2e-08 33.1 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 EME71163.1 - 0.00078 19.2 0.0 0.0011 18.7 0.0 1.2 1 0 0 1 1 1 1 Redoxin Thioredoxin_8 PF13905.6 EME71163.1 - 0.0046 17.3 0.0 0.0084 16.4 0.0 1.6 1 1 0 1 1 1 1 Thioredoxin-like Thioredoxin_2 PF13098.6 EME71163.1 - 0.17 12.3 0.0 0.28 11.7 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin-like domain GATase_3 PF07685.14 EME71164.1 - 3.9e-29 101.6 0.0 5.9e-29 101.1 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain AAA_26 PF13500.6 EME71164.1 - 2.2e-15 57.0 0.1 3.8e-09 36.6 0.0 2.3 2 0 0 2 2 2 2 AAA domain CbiA PF01656.23 EME71164.1 - 1.5e-12 47.7 0.0 2.2e-12 47.2 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MobB PF03205.14 EME71164.1 - 0.0018 18.2 0.1 0.0045 16.9 0.0 1.7 1 1 1 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B PHB_depo_C PF06850.11 EME71165.1 - 3.1e-96 320.6 0.1 4.6e-96 320.1 0.1 1.3 1 0 0 1 1 1 1 PHB de-polymerase C-terminus Lsm_C PF14894.6 EME71165.1 - 0.16 11.8 0.0 0.48 10.3 0.0 1.8 1 0 0 1 1 1 0 Lsm C-terminal CxxCxxCC PF03692.15 EME71166.1 - 3e-08 34.2 5.6 5.2e-08 33.5 5.6 1.4 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain GCS2 PF04107.13 EME71167.1 - 2e-93 312.9 0.0 2.8e-93 312.5 0.0 1.2 1 0 0 1 1 1 1 Glutamate-cysteine ligase family 2(GCS2) Asp_decarbox PF02261.16 EME71168.1 - 2.6e-37 127.3 0.0 3.6e-37 126.8 0.0 1.2 1 0 0 1 1 1 1 Aspartate decarboxylase QueC PF06508.13 EME71169.1 - 4.1e-73 245.4 0.0 4.6e-73 245.2 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 EME71169.1 - 2.2e-07 30.9 0.1 2.9e-07 30.5 0.1 1.1 1 0 0 1 1 1 1 Asparagine synthase ThiI PF02568.14 EME71169.1 - 0.06 12.9 0.0 4.9 6.7 0.0 2.1 2 0 0 2 2 2 0 Thiamine biosynthesis protein (ThiI) tRNA_Me_trans PF03054.16 EME71169.1 - 0.14 10.9 0.0 0.18 10.5 0.0 1.1 1 0 0 1 1 1 0 tRNA methyl transferase NAD_synthase PF02540.17 EME71169.1 - 0.18 10.9 0.0 0.2 10.7 0.0 1.2 1 0 0 1 1 1 0 NAD synthase DUF4684 PF15736.5 EME71169.1 - 0.26 9.9 0.7 0.34 9.5 0.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4684) SBP_bac_3 PF00497.20 EME71170.1 - 0.004 16.6 0.0 0.0045 16.4 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Asn_synthase PF00733.21 EME71171.1 - 4.9e-98 329.1 0.0 6.1e-98 328.8 0.0 1.1 1 0 0 1 1 1 1 Asparagine synthase GATase_7 PF13537.6 EME71171.1 - 9.3e-44 148.3 0.0 1.4e-43 147.8 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 EME71171.1 - 1.9e-40 138.2 0.0 3.9e-40 137.2 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain DUF3700 PF12481.8 EME71171.1 - 0.00014 21.4 0.0 0.00025 20.6 0.0 1.3 1 0 0 1 1 1 1 Aluminium induced protein NAD_synthase PF02540.17 EME71171.1 - 0.00023 20.4 0.0 0.00035 19.8 0.0 1.2 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 EME71171.1 - 0.052 12.3 0.1 0.074 11.8 0.1 1.2 1 0 0 1 1 1 0 tRNA methyl transferase QueC PF06508.13 EME71171.1 - 0.3 10.5 0.0 0.47 9.9 0.0 1.2 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC TPR_2 PF07719.17 EME71172.1 - 2.1e-35 118.0 27.1 4.1e-07 29.6 0.6 9.6 9 0 0 9 9 9 8 Tetratricopeptide repeat TPR_1 PF00515.28 EME71172.1 - 3.7e-29 99.3 8.6 4.9e-06 26.1 0.3 8.5 8 0 0 8 8 8 5 Tetratricopeptide repeat TPR_8 PF13181.6 EME71172.1 - 4.1e-29 98.3 4.0 0.0025 17.9 0.0 9.5 11 0 0 11 11 8 6 Tetratricopeptide repeat TPR_14 PF13428.6 EME71172.1 - 3.9e-28 95.7 56.3 2e-05 25.0 1.2 10.8 2 1 8 10 10 10 9 Tetratricopeptide repeat TPR_17 PF13431.6 EME71172.1 - 8.2e-26 88.5 10.9 6.4e-05 23.1 0.1 9.5 9 0 0 9 9 9 5 Tetratricopeptide repeat TPR_19 PF14559.6 EME71172.1 - 1.1e-25 89.9 29.5 1.6e-06 28.6 2.6 7.0 3 1 1 5 5 5 4 Tetratricopeptide repeat TPR_11 PF13414.6 EME71172.1 - 2.5e-22 78.3 10.6 0.00095 18.8 0.1 8.9 2 2 7 9 9 9 6 TPR repeat TPR_16 PF13432.6 EME71172.1 - 2e-21 76.3 75.9 5.3e-08 33.4 3.8 7.4 5 3 4 9 9 7 7 Tetratricopeptide repeat TPR_12 PF13424.6 EME71172.1 - 6.1e-16 58.5 47.3 4.8e-06 26.8 2.3 7.2 6 3 1 7 7 6 5 Tetratricopeptide repeat Methyltransf_23 PF13489.6 EME71172.1 - 1.7e-15 57.3 0.0 4.6e-15 55.8 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 EME71172.1 - 3.6e-14 53.2 0.1 1.1e-13 51.6 0.1 1.9 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 EME71172.1 - 5.2e-14 52.7 0.3 4.4e-13 49.7 0.1 2.7 3 0 0 3 3 2 1 Methyltransferase domain ANAPC3 PF12895.7 EME71172.1 - 4.1e-13 49.3 2.3 0.01 16.0 0.0 4.4 2 1 1 4 4 4 3 Anaphase-promoting complex, cyclosome, subunit 3 TPR_6 PF13174.6 EME71172.1 - 1.7e-12 47.1 15.3 0.24 12.1 0.0 9.3 9 0 0 9 9 9 3 Tetratricopeptide repeat Methyltransf_12 PF08242.12 EME71172.1 - 3.6e-12 46.9 0.0 1.4e-11 44.9 0.0 2.1 1 0 0 1 1 1 1 Methyltransferase domain TPR_7 PF13176.6 EME71172.1 - 7.1e-12 44.5 19.9 0.014 15.4 0.1 8.1 8 0 0 8 8 8 4 Tetratricopeptide repeat Methyltransf_31 PF13847.6 EME71172.1 - 2.5e-10 40.4 0.0 4.4e-10 39.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain TPR_20 PF14561.6 EME71172.1 - 6.7e-10 39.2 16.2 0.0046 17.3 0.4 4.4 2 1 1 4 4 4 3 Tetratricopeptide repeat TPR_9 PF13371.6 EME71172.1 - 7.7e-09 35.6 42.6 1.1e-05 25.5 1.3 6.4 3 2 3 7 7 6 5 Tetratricopeptide repeat NodS PF05401.11 EME71172.1 - 4e-08 33.1 0.0 7.3e-08 32.3 0.0 1.4 1 0 0 1 1 1 1 Nodulation protein S (NodS) TPR_15 PF13429.6 EME71172.1 - 1e-05 24.9 16.0 0.14 11.3 3.2 4.3 1 1 3 4 4 4 3 Tetratricopeptide repeat TPR_10 PF13374.6 EME71172.1 - 2.4e-05 24.0 48.0 0.0019 18.0 0.7 8.4 8 1 1 9 9 9 3 Tetratricopeptide repeat Ubie_methyltran PF01209.18 EME71172.1 - 8.8e-05 21.9 0.0 0.00013 21.4 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.14 EME71172.1 - 0.00071 19.2 0.0 0.0037 16.8 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase small domain CheR PF01739.18 EME71172.1 - 0.011 15.2 0.0 2.4 7.6 0.0 2.5 1 1 1 2 2 2 0 CheR methyltransferase, SAM binding domain PrmA PF06325.13 EME71172.1 - 0.011 15.1 0.0 0.019 14.4 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Fis1_TPR_C PF14853.6 EME71172.1 - 0.021 14.9 0.3 1.9 8.6 0.1 3.5 3 0 0 3 3 3 0 Fis1 C-terminal tetratricopeptide repeat NARP1 PF12569.8 EME71172.1 - 0.023 13.6 0.4 4.4 6.1 0.0 3.0 2 1 1 3 3 3 0 NMDA receptor-regulated protein 1 TPR_4 PF07721.14 EME71172.1 - 0.039 14.6 6.2 0.039 14.6 6.2 11.2 11 1 0 11 11 9 0 Tetratricopeptide repeat PCMT PF01135.19 EME71172.1 - 0.076 12.7 0.0 0.11 12.2 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) BTAD PF03704.17 EME71172.1 - 0.13 12.7 30.6 0.4 11.1 1.5 4.3 1 1 1 3 3 3 0 Bacterial transcriptional activator domain Methyltransf_32 PF13679.6 EME71172.1 - 0.18 11.8 0.0 0.41 10.6 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Rrf2 PF02082.20 EME71173.1 - 2.7e-24 85.3 0.1 5.3e-24 84.4 0.0 1.5 2 0 0 2 2 2 1 Transcriptional regulator HrcA_DNA-bdg PF03444.15 EME71173.1 - 0.00073 19.1 0.0 0.0012 18.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_Crp_2 PF13545.6 EME71173.1 - 0.0014 18.5 0.1 0.003 17.5 0.0 1.6 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain GntR PF00392.21 EME71173.1 - 0.065 12.9 0.1 0.11 12.2 0.1 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family FMN_red PF03358.15 EME71174.1 - 6e-16 58.6 1.8 1.3e-14 54.2 1.8 2.3 1 1 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_5 PF12724.7 EME71174.1 - 2.4e-10 40.8 0.1 3.3e-10 40.4 0.1 1.3 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_2 PF02525.17 EME71174.1 - 2.6e-06 27.3 0.2 1.6e-05 24.7 0.2 2.3 1 1 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_1 PF00258.25 EME71174.1 - 4.4e-06 27.0 0.0 5e-06 26.8 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin Flavodoxin_3 PF12641.7 EME71174.1 - 0.00068 19.4 0.0 0.0011 18.6 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin domain HATPase_c PF02518.26 EME71175.1 - 1e-28 100.1 0.0 1.8e-28 99.2 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 EME71175.1 - 1.8e-23 82.8 0.1 3.5e-23 81.9 0.1 1.5 1 0 0 1 1 1 1 Response regulator receiver domain HisKA PF00512.25 EME71175.1 - 1.8e-16 59.9 0.7 5.6e-16 58.3 0.7 1.9 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain Hpt PF01627.23 EME71175.1 - 2.3e-05 24.5 3.0 7.8e-05 22.9 3.0 1.9 1 0 0 1 1 1 1 Hpt domain HATPase_c_3 PF13589.6 EME71175.1 - 0.16 11.8 0.0 0.29 11.0 0.0 1.3 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Mur_ligase_M PF08245.12 EME71176.1 - 5.1e-09 36.4 0.0 9.1e-09 35.6 0.0 1.5 1 1 0 1 1 1 1 Mur ligase middle domain Mur_ligase_C PF02875.21 EME71176.1 - 0.00017 21.7 0.0 0.0005 20.3 0.0 1.9 2 0 0 2 2 2 1 Mur ligase family, glutamate ligase domain MASE3 PF17159.4 EME71177.1 - 3.1e-64 216.7 0.3 4.1e-64 216.3 0.3 1.1 1 0 0 1 1 1 1 Membrane-associated sensor domain HATPase_c PF02518.26 EME71177.1 - 2.1e-24 86.2 0.0 3.2e-24 85.6 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 EME71177.1 - 2.6e-21 76.0 0.1 1.4e-20 73.6 0.0 2.1 2 0 0 2 2 2 1 PAS fold PAS PF00989.25 EME71177.1 - 1.4e-09 37.9 0.0 2.2e-09 37.3 0.0 1.3 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 EME71177.1 - 3.5e-08 33.7 0.0 6.1e-08 32.9 0.0 1.4 1 0 0 1 1 1 1 PAS domain HisKA PF00512.25 EME71177.1 - 9.3e-06 25.6 0.2 1.8e-05 24.7 0.2 1.5 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.7 EME71177.1 - 0.0002 21.3 0.1 0.0011 18.9 0.0 2.3 2 0 0 2 2 2 1 PAS domain Bax1-I PF01027.20 EME71177.1 - 0.018 14.9 0.6 0.018 14.9 0.6 2.0 1 1 1 2 2 2 0 Inhibitor of apoptosis-promoting Bax1 DUF1772 PF08592.11 EME71177.1 - 0.098 13.0 16.4 0.41 11.0 1.5 3.7 1 1 2 3 3 3 0 Domain of unknown function (DUF1772) MerC PF03203.14 EME71177.1 - 0.13 12.7 14.9 0.54 10.7 2.9 3.2 1 1 1 2 2 2 0 MerC mercury resistance protein DUF2157 PF09925.9 EME71177.1 - 3.7 7.3 12.2 1.8 8.4 7.1 2.5 2 1 0 2 2 2 0 Predicted membrane protein (DUF2157) DUF202 PF02656.15 EME71177.1 - 6.9 7.2 14.8 9.1 6.8 0.5 3.7 3 0 0 3 3 3 0 Domain of unknown function (DUF202) Carboxyl_trans PF01039.22 EME71178.1 - 8.2e-17 61.0 0.2 1.3e-16 60.4 0.2 1.3 1 0 0 1 1 1 1 Carboxyl transferase domain zf-ACC PF17848.1 EME71178.1 - 7.3e-11 41.9 1.2 1.2e-10 41.2 1.2 1.4 1 0 0 1 1 1 1 Acetyl-coA carboxylase zinc finger domain OrfB_Zn_ribbon PF07282.11 EME71178.1 - 0.054 13.4 1.6 0.13 12.2 1.6 1.6 1 1 0 1 1 1 0 Putative transposase DNA-binding domain DUF1451 PF07295.11 EME71178.1 - 0.096 12.7 0.8 11 6.0 0.2 2.3 2 0 0 2 2 2 0 Zinc-ribbon containing domain TF_Zn_Ribbon PF08271.12 EME71178.1 - 0.16 11.5 0.2 0.31 10.6 0.2 1.4 1 0 0 1 1 1 0 TFIIB zinc-binding UPF0547 PF10571.9 EME71178.1 - 0.57 10.3 3.5 15 5.8 0.2 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF4379 PF14311.6 EME71178.1 - 0.95 9.9 3.2 23 5.4 0.1 2.3 1 1 1 2 2 2 0 Probable Zinc-ribbon domain Trp_syntA PF00290.20 EME71179.1 - 2.9e-95 318.0 0.3 3.4e-95 317.8 0.3 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain His_biosynth PF00977.21 EME71179.1 - 2.8e-05 23.7 0.3 0.00019 21.0 0.2 2.2 2 1 0 3 3 3 1 Histidine biosynthesis protein PcrB PF01884.17 EME71179.1 - 0.0025 17.3 0.5 0.007 15.8 0.4 1.8 2 0 0 2 2 2 1 PcrB family Hydrolase PF00702.26 EME71179.1 - 0.034 14.4 0.0 0.059 13.6 0.0 1.6 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase PALP PF00291.25 EME71180.1 - 5.6e-48 163.8 0.9 6.6e-48 163.6 0.9 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme EAL PF00563.20 EME71181.1 - 2e-47 161.7 0.0 3.1e-47 161.1 0.0 1.3 1 0 0 1 1 1 1 EAL domain GGDEF PF00990.21 EME71181.1 - 3.3e-10 39.9 0.0 5.9e-10 39.1 0.0 1.4 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain CBS PF00571.28 EME71181.1 - 4e-07 30.4 0.3 0.0029 18.0 0.0 3.5 3 0 0 3 3 3 2 CBS domain DUF5380 PF17351.2 EME71181.1 - 0.0049 16.7 0.0 0.011 15.5 0.0 1.6 1 0 0 1 1 1 1 Family of unknown function (DUF5380) PAS_3 PF08447.12 EME71182.1 - 3.4e-10 40.1 0.0 5.9e-10 39.3 0.0 1.3 1 0 0 1 1 1 1 PAS fold PAS PF00989.25 EME71182.1 - 8.8e-07 28.9 0.0 1.3e-06 28.3 0.0 1.2 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 EME71182.1 - 9.4e-07 29.0 0.0 1.5e-06 28.4 0.0 1.3 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.10 EME71182.1 - 0.00023 21.4 0.0 0.00045 20.4 0.0 1.4 1 0 0 1 1 1 1 PAS fold MCPsignal PF00015.21 EME71183.1 - 2.9e-29 102.1 43.8 3.6e-29 101.8 28.4 3.1 1 1 2 3 3 3 1 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF948 PF06103.11 EME71183.1 - 8.4e-05 22.7 26.9 0.021 15.1 2.7 5.6 2 1 2 4 4 4 2 Bacterial protein of unknown function (DUF948) DUF4559 PF15112.6 EME71183.1 - 0.072 12.8 1.2 5.5 6.6 0.0 2.7 1 1 0 3 3 3 0 Domain of unknown function (DUF4559) Laminin_II PF06009.12 EME71183.1 - 0.13 12.3 27.0 0.71 9.9 4.7 3.8 1 1 3 4 4 4 0 Laminin Domain II FlgN PF05130.12 EME71183.1 - 1.3 9.5 19.1 0.92 10.0 5.0 3.3 1 1 2 3 3 3 0 FlgN protein Seryl_tRNA_N PF02403.22 EME71183.1 - 1.7 8.9 14.0 3.1 8.1 1.2 3.7 1 1 2 3 3 3 0 Seryl-tRNA synthetase N-terminal domain IFT20 PF14931.6 EME71183.1 - 1.9 8.7 7.3 4.5 7.5 0.2 3.2 1 1 1 3 3 3 0 Intraflagellar transport complex B, subunit 20 DUF1664 PF07889.12 EME71183.1 - 2.5 8.1 15.4 0.99 9.5 0.6 3.9 2 2 1 3 3 3 0 Protein of unknown function (DUF1664) zf-CDGSH PF09360.10 EME71184.1 - 2.4e-18 66.1 4.5 1.7e-10 40.9 0.2 2.1 2 0 0 2 2 2 2 Iron-binding zinc finger CDGSH type NAD_Gly3P_dh_C PF07479.14 EME71185.1 - 3.2e-44 150.7 0.3 4.5e-44 150.2 0.3 1.2 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus NAD_Gly3P_dh_N PF01210.23 EME71185.1 - 2e-35 122.1 0.0 3.4e-35 121.3 0.0 1.4 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.16 EME71185.1 - 0.0064 16.1 0.0 0.012 15.2 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA ApbA_C PF08546.11 EME71185.1 - 0.024 14.8 0.1 0.067 13.4 0.1 1.8 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA C terminal Rick_17kDa_Anti PF05433.15 EME71186.1 - 2.7e-05 23.9 21.2 2.7e-05 23.9 21.2 2.1 2 1 0 2 2 2 1 Glycine zipper 2TM domain Gly-zipper_Omp PF13488.6 EME71186.1 - 0.0073 16.3 22.9 0.19 11.8 10.0 2.7 1 1 2 3 3 3 3 Glycine zipper DUF5061 PF16587.5 EME71186.1 - 0.11 12.6 0.2 0.11 12.6 0.2 2.0 2 0 0 2 2 2 0 17 kDa common-antigen outer membrane protein PT-VENN PF04829.13 EME71186.1 - 5.6 7.1 10.0 5.5 7.2 0.5 2.5 2 0 0 2 2 2 0 Pre-toxin domain with VENN motif Bac_DNA_binding PF00216.21 EME71187.1 - 1e-31 109.0 0.1 1.1e-31 108.8 0.1 1.0 1 0 0 1 1 1 1 Bacterial DNA-binding protein HU-HIG PF18291.1 EME71187.1 - 5.4e-07 29.7 0.0 6.1e-07 29.6 0.0 1.0 1 0 0 1 1 1 1 HU domain fused to wHTH, Ig, or Glycine-rich motif HU-CCDC81_euk_1 PF14908.6 EME71187.1 - 0.0071 16.5 0.0 0.0085 16.2 0.0 1.1 1 0 0 1 1 1 1 CCDC81 eukaryotic HU domain 1 HU-CCDC81_euk_2 PF18289.1 EME71187.1 - 0.043 14.0 0.0 0.065 13.4 0.0 1.3 1 0 0 1 1 1 0 CCDC81 eukaryotic HU domain 2 HU-CCDC81_bac_2 PF18175.1 EME71187.1 - 0.076 12.9 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 CCDC81-like prokaryotic HU domain 2 HU-DNA_bdg PF14848.6 EME71187.1 - 0.1 12.6 0.0 0.23 11.5 0.0 1.5 2 0 0 2 2 2 0 DNA-binding domain LapA_dom PF06305.11 EME71188.1 - 2.3e-10 40.1 0.4 7.5e-09 35.3 0.0 2.0 1 1 1 2 2 2 2 Lipopolysaccharide assembly protein A domain YbgT_YccB PF08173.11 EME71188.1 - 0.03 14.4 4.1 0.03 14.4 4.1 2.3 2 0 0 2 2 2 0 Membrane bound YbgT-like protein OMPdecase PF00215.24 EME71189.1 - 1e-38 133.2 0.1 1.1e-38 133.1 0.1 1.0 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family PRAI PF00697.22 EME71190.1 - 5.1e-47 160.2 0.0 5.8e-47 160.0 0.0 1.0 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase GGDEF PF00990.21 EME71191.1 - 2.8e-52 176.7 0.1 3.9e-52 176.2 0.1 1.2 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain PAS_9 PF13426.7 EME71191.1 - 1.5e-08 34.8 0.0 3.6e-08 33.6 0.0 1.6 2 0 0 2 2 2 1 PAS domain PAS PF00989.25 EME71191.1 - 1.9e-08 34.3 0.0 7.6e-08 32.4 0.0 2.0 1 1 0 1 1 1 1 PAS fold PAS_4 PF08448.10 EME71191.1 - 1.5e-07 31.6 0.1 1.1e-05 25.6 0.1 2.5 1 1 0 1 1 1 1 PAS fold Peptidase_M17 PF00883.21 EME71191.1 - 0.0012 18.2 0.7 0.0021 17.4 0.7 1.3 1 0 0 1 1 1 1 Cytosol aminopeptidase family, catalytic domain MLTR_LBD PF17765.1 EME71191.1 - 0.011 15.8 2.2 0.033 14.3 0.1 2.7 2 2 2 4 4 4 0 MmyB-like transcription regulator ligand binding domain PAS_3 PF08447.12 EME71191.1 - 0.085 13.2 0.0 0.24 11.7 0.0 1.8 2 0 0 2 2 2 0 PAS fold MFS_1 PF07690.16 EME71192.1 - 4e-43 147.7 44.5 4e-43 147.7 44.5 1.8 2 0 0 2 2 2 1 Major Facilitator Superfamily UL42 PF17638.2 EME71192.1 - 0.036 14.0 2.1 0.068 13.2 0.2 2.4 3 0 0 3 3 3 0 HCMV UL42 DUF2070 PF09843.9 EME71192.1 - 4.8 5.4 10.9 2.2 6.5 8.2 1.7 1 1 1 2 2 2 0 Predicted membrane protein (DUF2070) HlyD_D23 PF16576.5 EME71193.1 - 1.6e-23 83.1 1.3 3.1e-22 78.9 1.3 2.2 1 1 0 1 1 1 1 Barrel-sandwich domain of CusB or HlyD membrane-fusion HlyD_3 PF13437.6 EME71193.1 - 1.2e-21 77.4 1.5 3.3e-17 63.1 0.1 2.7 2 0 0 2 2 2 2 HlyD family secretion protein Biotin_lipoyl_2 PF13533.6 EME71193.1 - 4.5e-15 55.2 7.3 4e-10 39.4 0.4 3.2 3 0 0 3 3 3 2 Biotin-lipoyl like HlyD PF00529.20 EME71193.1 - 8.8e-11 41.5 0.0 1.3e-10 41.0 0.0 1.4 1 1 0 1 1 1 1 HlyD membrane-fusion protein of T1SS Biotin_lipoyl PF00364.22 EME71193.1 - 0.019 14.8 0.0 9.8 6.1 0.0 2.6 2 0 0 2 2 2 0 Biotin-requiring enzyme QRPTase_N PF02749.16 EME71193.1 - 0.041 13.9 0.1 6 7.0 0.0 3.0 2 1 1 3 3 3 0 Quinolinate phosphoribosyl transferase, N-terminal domain FliJ PF02050.16 EME71193.1 - 1.9 8.7 8.0 0.32 11.2 2.1 2.1 1 1 1 2 2 2 0 Flagellar FliJ protein DUF1476 PF07345.11 EME71194.1 - 8.5e-25 87.1 0.1 9.6e-25 86.9 0.1 1.0 1 0 0 1 1 1 1 ATPase inhibitor subunit zeta ExoD PF06055.12 EME71195.1 - 1.2e-30 106.2 16.0 1.5e-30 105.9 16.0 1.0 1 0 0 1 1 1 1 Exopolysaccharide synthesis, ExoD FAD_binding_4 PF01565.23 EME71195.1 - 0.055 13.2 1.0 0.13 12.0 1.0 1.6 1 1 0 1 1 1 0 FAD binding domain Pirin PF02678.16 EME71196.1 - 9.5e-37 125.3 1.8 1.6e-36 124.6 0.3 1.9 2 0 0 2 2 2 1 Pirin Pirin_C_2 PF17954.1 EME71196.1 - 5.5e-26 90.6 0.5 1.2e-25 89.4 0.2 1.7 2 0 0 2 2 2 1 Quercetinase C-terminal cupin domain Cupin_2 PF07883.11 EME71196.1 - 0.092 12.5 0.8 0.34 10.6 0.2 2.1 2 0 0 2 2 2 0 Cupin domain ATP-synt_B PF00430.18 EME71197.1 - 1.4e-24 86.7 21.5 1.8e-24 86.3 21.5 1.1 1 0 0 1 1 1 1 ATP synthase B/B' CF(0) Mt_ATP-synt_B PF05405.14 EME71197.1 - 3e-10 39.9 3.2 3.8e-10 39.6 3.2 1.1 1 0 0 1 1 1 1 Mitochondrial ATP synthase B chain precursor (ATP-synt_B) Actin_micro PF17003.5 EME71197.1 - 0.023 13.9 0.4 0.027 13.7 0.4 1.1 1 0 0 1 1 1 0 Putative actin-like family DUF1327 PF07041.11 EME71197.1 - 0.032 14.3 2.4 0.16 12.0 0.8 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1327) DUF948 PF06103.11 EME71197.1 - 0.089 13.1 3.2 1.1 9.6 3.2 2.4 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF948) YMF19 PF02326.15 EME71197.1 - 0.11 13.3 0.0 0.2 12.5 0.0 1.4 1 1 0 1 1 1 0 Plant ATP synthase F0 OmpH PF03938.14 EME71197.1 - 0.14 12.4 14.6 0.2 12.0 14.6 1.2 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) DUF2894 PF11445.8 EME71197.1 - 0.19 12.2 8.6 0.24 11.9 8.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2894) DUF2937 PF11157.8 EME71197.1 - 0.26 11.0 8.5 0.47 10.2 8.5 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2937) DUF447 PF04289.12 EME71197.1 - 0.31 10.8 4.1 0.9 9.3 0.9 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF447) CREPT PF16566.5 EME71197.1 - 0.58 10.3 9.6 0.22 11.7 6.4 1.7 1 1 1 2 2 2 0 Cell-cycle alteration and expression-elevated protein in tumour TMPIT PF07851.13 EME71197.1 - 1.3 8.3 4.2 1.6 7.9 4.2 1.1 1 0 0 1 1 1 0 TMPIT-like protein MutS_IV PF05190.18 EME71197.1 - 1.4 9.3 5.6 2.5 8.5 0.9 2.2 1 1 1 2 2 2 0 MutS family domain IV ISG65-75 PF11727.8 EME71197.1 - 2.3 7.4 16.0 5.4 6.2 1.1 2.1 1 1 1 2 2 2 0 Invariant surface glycoprotein DUF2203 PF09969.9 EME71197.1 - 3.5 8.4 7.8 5.9 7.6 7.8 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) ATP-synt_B PF00430.18 EME71198.1 - 7.2e-25 87.6 14.1 9.7e-25 87.2 14.1 1.2 1 0 0 1 1 1 1 ATP synthase B/B' CF(0) YMF19 PF02326.15 EME71198.1 - 3.1e-12 47.1 0.0 5e-12 46.4 0.0 1.4 1 0 0 1 1 1 1 Plant ATP synthase F0 Mt_ATP-synt_B PF05405.14 EME71198.1 - 5.2e-09 35.9 0.7 6.7e-09 35.6 0.7 1.1 1 0 0 1 1 1 1 Mitochondrial ATP synthase B chain precursor (ATP-synt_B) NACHT_N PF17100.5 EME71198.1 - 0.0024 17.8 1.8 0.0029 17.5 1.8 1.1 1 0 0 1 1 1 1 N-terminal domain of NWD NACHT-NTPase Fun_ATP-synt_8 PF05933.13 EME71198.1 - 0.0066 16.6 1.3 0.0092 16.1 1.3 1.2 1 0 0 1 1 1 1 Fungal ATP synthase protein 8 (A6L) YbjQ_1 PF01906.17 EME71198.1 - 3.8 8.2 6.5 1.3 9.7 1.8 2.1 1 1 1 2 2 2 0 Putative heavy-metal-binding ATP-synt_C PF00137.21 EME71199.1 - 2e-13 50.4 9.2 2.5e-13 50.1 9.2 1.1 1 0 0 1 1 1 1 ATP synthase subunit C ATP-synt_A PF00119.20 EME71200.1 - 1.3e-56 191.9 29.0 1.6e-56 191.6 29.0 1.0 1 0 0 1 1 1 1 ATP synthase A chain ATPase_gene1 PF09527.10 EME71201.1 - 5.2e-19 68.2 9.1 6.4e-19 67.9 9.1 1.1 1 0 0 1 1 1 1 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter ATP-synt_I PF03899.15 EME71201.1 - 0.13 12.6 3.5 2.1 8.8 0.3 2.0 1 1 1 2 2 2 0 ATP synthase I chain Sterol-sensing PF12349.8 EME71201.1 - 0.19 11.5 0.0 0.2 11.5 0.0 1.0 1 0 0 1 1 1 0 Sterol-sensing domain of SREBP cleavage-activation DUF86 PF01934.17 EME71202.1 - 0.00033 20.5 0.0 0.00036 20.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 NTase_sub_bind PF08780.11 EME71202.1 - 0.077 13.0 0.0 0.081 12.9 0.0 1.0 1 0 0 1 1 1 0 Nucleotidyltransferase substrate binding protein like NTP_transf_2 PF01909.23 EME71203.1 - 1.6e-12 47.5 0.0 1.8e-12 47.4 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 EME71203.1 - 1.4e-10 41.1 0.0 1.6e-10 40.9 0.0 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase SMC_N PF02463.19 EME71204.1 - 1.3e-56 191.6 0.0 1.8e-56 191.1 0.0 1.2 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 EME71204.1 - 1e-13 52.3 0.0 1e-13 52.3 0.0 4.6 4 2 0 4 4 4 1 AAA domain AAA_21 PF13304.6 EME71204.1 - 1.4e-10 41.5 0.0 4.5e-06 26.7 0.0 2.8 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 EME71204.1 - 2.8e-05 24.0 0.0 6.3e-05 22.9 0.0 1.5 2 0 0 2 2 2 1 AAA ATPase domain ABC_tran PF00005.27 EME71204.1 - 3.5e-05 24.3 2.8 0.022 15.3 0.0 3.9 4 0 0 4 4 4 2 ABC transporter AAA_29 PF13555.6 EME71204.1 - 0.019 14.7 0.0 0.039 13.7 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Thioredoxin_4 PF13462.6 EME71205.1 - 1.2e-42 145.9 0.0 1.5e-42 145.6 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin DSBA PF01323.20 EME71205.1 - 4.9e-10 39.5 0.1 6.4e-06 26.1 0.0 2.1 1 1 1 2 2 2 2 DSBA-like thioredoxin domain Thioredoxin_2 PF13098.6 EME71205.1 - 6.9e-06 26.5 0.0 0.013 15.9 0.0 2.1 2 0 0 2 2 2 2 Thioredoxin-like domain Thioredoxin_3 PF13192.6 EME71205.1 - 0.0088 16.1 0.0 0.37 10.9 0.0 2.3 2 0 0 2 2 2 1 Thioredoxin domain Thioredoxin_12 PF18400.1 EME71205.1 - 0.02 14.7 0.0 0.038 13.8 0.0 1.4 1 0 0 1 1 1 0 Thioredoxin-like domain DUF3328 PF11807.8 EME71206.1 - 0.12 12.1 0.0 0.13 12.0 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF3328) DciA PF05258.12 EME71207.1 - 5e-20 71.7 0.0 8.8e-20 70.9 0.0 1.3 1 0 0 1 1 1 1 Dna[CI] antecedent, DciA DEC-1_N PF04625.13 EME71207.1 - 0.02 13.9 1.7 0.024 13.7 1.7 1.1 1 0 0 1 1 1 0 DEC-1 protein, N-terminal region NeA_P2 PF12312.8 EME71207.1 - 0.35 10.3 3.2 0.5 9.8 2.8 1.5 2 0 0 2 2 2 0 Nepovirus subgroup A polyprotein NUDIX_4 PF14815.6 EME71208.1 - 2.7e-25 88.5 0.6 6.8e-25 87.2 0.3 1.9 3 0 0 3 3 3 1 NUDIX domain HhH-GPD PF00730.25 EME71208.1 - 1e-16 61.3 0.0 1.5e-16 60.7 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 EME71208.1 - 4.5e-06 26.3 0.1 1.2e-05 24.9 0.1 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.9 EME71208.1 - 0.0013 19.0 9.3 0.0032 17.7 9.3 1.8 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III NUDIX PF00293.28 EME71208.1 - 0.11 12.6 0.1 2.7 8.0 0.1 2.5 2 1 0 2 2 2 0 NUDIX domain N6_N4_Mtase PF01555.18 EME71211.1 - 7.5e-56 189.4 0.0 9.9e-56 189.0 0.0 1.1 1 0 0 1 1 1 1 DNA methylase RAMA PF18755.1 EME71211.1 - 4.6e-16 59.2 0.0 7.6e-16 58.5 0.0 1.4 1 0 0 1 1 1 1 Restriction Enzyme Adenine Methylase Associated UPF0020 PF01170.18 EME71211.1 - 0.0025 17.5 0.0 0.53 9.9 0.0 2.7 3 0 0 3 3 3 2 Putative RNA methylase family UPF0020 MethyltransfD12 PF02086.15 EME71211.1 - 0.011 15.4 0.0 3.8 7.1 0.0 2.2 2 0 0 2 2 2 0 D12 class N6 adenine-specific DNA methyltransferase Cons_hypoth95 PF03602.15 EME71211.1 - 0.028 14.1 0.0 0.5 10.0 0.0 2.1 2 0 0 2 2 2 0 Conserved hypothetical protein 95 Methyltransf_25 PF13649.6 EME71211.1 - 0.077 13.7 0.0 1.4 9.7 0.0 2.6 3 0 0 3 3 3 0 Methyltransferase domain RNase_HII PF01351.18 EME71212.1 - 1.1e-47 162.5 0.0 1.2e-47 162.3 0.0 1.0 1 0 0 1 1 1 1 Ribonuclease HII Rnk_N PF14760.6 EME71212.1 - 2.7 8.5 6.2 6.2 7.4 0.4 2.8 2 0 0 2 2 2 0 Rnk N-terminus Na_H_Exchanger PF00999.21 EME71213.1 - 2.9e-57 194.2 41.9 3.5e-57 193.9 41.9 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Orai-1 PF07856.12 EME71213.1 - 0.013 15.2 2.4 0.028 14.1 1.4 2.1 1 1 0 1 1 1 0 Mediator of CRAC channel activity PAS_3 PF08447.12 EME71214.1 - 2.9e-28 98.0 0.0 1.2e-15 57.5 0.0 2.5 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.26 EME71214.1 - 4.5e-24 85.1 0.0 7.8e-24 84.3 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dCache_1 PF02743.18 EME71214.1 - 4.2e-15 56.2 0.0 2.4e-14 53.7 0.0 2.2 3 0 0 3 3 3 1 Cache domain HisKA PF00512.25 EME71214.1 - 5.6e-13 48.7 0.1 2e-12 47.0 0.1 2.0 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS PF00989.25 EME71214.1 - 2.3e-08 34.0 0.0 9.5e-06 25.6 0.0 2.5 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.10 EME71214.1 - 5.4e-08 33.1 0.1 0.00013 22.1 0.0 2.9 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 EME71214.1 - 8.5e-05 22.8 0.0 0.46 10.8 0.0 2.6 2 0 0 2 2 2 2 PAS domain HATPase_c_5 PF14501.6 EME71214.1 - 0.00034 20.5 0.0 0.00063 19.6 0.0 1.4 1 0 0 1 1 1 1 GHKL domain DUF4381 PF14316.6 EME71214.1 - 0.27 11.5 9.9 4.2 7.6 0.5 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4381) Arginosuc_synth PF00764.19 EME71215.1 - 3.2e-153 510.6 0.0 3.7e-153 510.4 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase QueC PF06508.13 EME71215.1 - 0.0022 17.5 0.0 0.0038 16.8 0.0 1.3 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 EME71215.1 - 0.0024 17.6 0.0 0.0038 17.0 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase ATP_bind_3 PF01171.20 EME71215.1 - 0.16 11.7 0.1 5.4 6.7 0.0 2.8 1 1 2 3 3 3 0 PP-loop family Radical_SAM PF04055.21 EME71216.1 - 5.6e-15 56.1 0.1 1.3e-14 55.0 0.1 1.6 1 1 0 1 1 1 1 Radical SAM superfamily TetR_N PF00440.23 EME71217.1 - 1.5e-14 53.5 0.4 2.7e-14 52.7 0.4 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_31 PF17940.1 EME71217.1 - 0.0021 18.3 5.2 0.008 16.4 1.3 2.4 2 1 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain Flagellin_C PF00700.21 EME71218.1 - 0.14 12.6 0.0 0.15 12.4 0.0 1.0 1 0 0 1 1 1 0 Bacterial flagellin C-terminal helical region FliP PF00813.20 EME71219.1 - 3.9e-79 265.0 14.0 4.8e-79 264.7 14.0 1.1 1 0 0 1 1 1 1 FliP family GTA_holin_3TM PF11351.8 EME71219.1 - 0.3 11.6 2.2 1.7 9.2 0.1 2.5 2 0 0 2 2 2 0 Holin of 3TMs, for gene-transfer release FliO PF04347.13 EME71220.1 - 1.8e-10 40.9 0.1 2.3e-10 40.6 0.1 1.1 1 0 0 1 1 1 1 Flagellar biosynthesis protein, FliO Bac_export_2 PF01312.19 EME71222.1 - 2.2e-15 56.7 2.9 2.5e-15 56.5 2.9 1.0 1 0 0 1 1 1 1 FlhB HrpN YscU SpaS Family LPD7 PF18821.1 EME71222.1 - 0.021 14.9 0.1 0.043 13.9 0.0 1.5 1 1 0 1 1 1 0 Large polyvalent protein-associated domain 7 Tex_N PF09371.10 EME71223.1 - 2.5e-72 242.4 0.2 4.2e-72 241.6 0.2 1.4 1 0 0 1 1 1 1 Tex-like protein N-terminal domain Tex_YqgF PF16921.5 EME71223.1 - 1e-50 171.4 0.0 1.9e-50 170.5 0.0 1.5 1 0 0 1 1 1 1 Tex protein YqgF-like domain HHH_3 PF12836.7 EME71223.1 - 4e-25 87.9 0.0 1e-24 86.5 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif YqgF PF14639.6 EME71223.1 - 4e-06 26.7 0.0 8.3e-06 25.6 0.0 1.6 1 0 0 1 1 1 1 Holliday-junction resolvase-like of SPT6 HHH_7 PF14635.6 EME71223.1 - 8.2e-05 22.9 0.0 0.00016 22.0 0.0 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix motif T2SSK PF03934.13 EME71223.1 - 0.00045 19.7 0.3 0.0045 16.4 0.0 2.3 2 0 0 2 2 2 1 Type II secretion system (T2SS), protein K FAD_binding_4 PF01565.23 EME71223.1 - 0.0016 18.2 0.1 0.011 15.5 0.0 2.4 3 0 0 3 3 3 1 FAD binding domain PilZ PF07238.14 EME71225.1 - 9.2e-06 25.9 0.0 1.5e-05 25.2 0.0 1.3 1 1 0 1 1 1 1 PilZ domain Alginate_exp PF13372.6 EME71226.1 - 6.8e-14 51.4 4.0 6.8e-14 51.4 4.0 2.2 2 1 0 2 2 2 1 Alginate export Laminin_G_3 PF13385.6 EME71227.1 - 5.6e-250 818.8 149.4 1.6e-23 83.5 4.1 17.2 15 0 0 15 15 14 13 Concanavalin A-like lectin/glucanases superfamily Laminin_G_2 PF02210.24 EME71227.1 - 2.8e-69 231.5 23.3 1.5e-09 38.5 0.0 14.5 14 0 0 14 14 14 12 Laminin G domain Big_9 PF17963.1 EME71227.1 - 4.1e-50 168.5 102.4 3.3e-12 47.0 10.4 42.4 39 7 2 42 42 25 13 Bacterial Ig domain Cadherin_5 PF17892.1 EME71227.1 - 1.1e-39 134.3 95.4 2.2e-07 30.8 0.3 16.5 15 1 1 16 16 16 9 Cadherin-like domain Laminin_G_1 PF00054.23 EME71227.1 - 4.8e-38 130.3 15.7 9.4e-09 35.6 0.0 13.4 12 0 0 12 12 12 6 Laminin G domain HemolysinCabind PF00353.19 EME71227.1 - 1.4e-37 127.2 722.7 1.5e-07 31.3 8.7 56.7 47 13 4 55 55 53 21 RTX calcium-binding nonapeptide repeat (4 copies) Pentaxin PF00354.17 EME71227.1 - 6e-20 71.7 11.0 0.085 12.5 0.0 11.1 12 0 0 12 12 12 7 Pentaxin family Cadherin_3 PF16184.5 EME71227.1 - 1.2e-15 57.5 0.0 1.9e-06 27.9 0.0 5.6 6 0 0 6 6 6 2 Cadherin-like FecR PF04773.13 EME71227.1 - 4.2e-06 27.3 0.0 4.2e-06 27.3 0.0 8.2 9 0 0 9 9 7 1 FecR protein Cadherin_4 PF17803.1 EME71227.1 - 4.6e-05 24.0 33.8 0.00067 20.2 1.6 36.5 32 6 4 36 36 17 11 Bacterial cadherin-like domain DUF1080 PF06439.11 EME71227.1 - 0.00016 21.8 0.9 14 5.7 0.0 6.5 8 0 0 8 8 8 0 Domain of Unknown Function (DUF1080) HCBP_related PF06594.11 EME71227.1 - 0.00021 21.2 25.8 0.41 10.6 0.8 10.1 10 0 0 10 10 10 2 Haemolysin-type calcium binding protein related domain LysM PF01476.20 EME71227.1 - 0.097 12.8 0.0 5.5 7.1 0.0 3.0 2 0 0 2 2 2 0 LysM domain PAS_9 PF13426.7 EME71228.1 - 4.1e-30 104.1 0.0 7.5e-14 51.9 0.0 3.4 3 0 0 3 3 3 2 PAS domain PAS PF00989.25 EME71228.1 - 8.7e-29 99.8 0.4 1.4e-14 54.1 0.0 3.5 4 0 0 4 4 4 2 PAS fold PAS_3 PF08447.12 EME71228.1 - 7.6e-26 90.2 3.0 3.2e-16 59.4 0.0 3.5 4 0 0 4 4 4 2 PAS fold PAS_4 PF08448.10 EME71228.1 - 5.4e-25 87.8 5.0 6.4e-15 55.4 0.2 3.7 3 0 0 3 3 3 2 PAS fold HATPase_c PF02518.26 EME71228.1 - 1.5e-23 83.4 0.0 3e-23 82.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 EME71228.1 - 1.9e-18 66.0 0.1 1.4e-08 34.6 0.0 2.9 2 0 0 2 2 2 2 PAS domain dCache_1 PF02743.18 EME71228.1 - 4.6e-17 62.6 0.0 8.6e-16 58.5 0.0 2.2 2 0 0 2 2 2 1 Cache domain HisKA PF00512.25 EME71228.1 - 2.3e-11 43.5 3.9 2.4e-11 43.5 0.1 2.9 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain sCache_3_2 PF17203.4 EME71228.1 - 0.00019 21.6 0.3 0.00084 19.5 0.1 2.3 2 0 0 2 2 2 1 Single cache domain 3 PAS_7 PF12860.7 EME71228.1 - 0.0015 18.6 0.0 0.021 15.0 0.0 2.9 2 1 0 2 2 2 1 PAS fold PAS_11 PF14598.6 EME71228.1 - 0.007 16.5 0.0 2.3 8.3 0.0 2.5 2 0 0 2 2 2 1 PAS domain HATPase_c_5 PF14501.6 EME71228.1 - 0.038 13.9 0.0 0.068 13.1 0.0 1.4 1 0 0 1 1 1 0 GHKL domain Cache_3-Cache_2 PF17201.4 EME71228.1 - 0.049 12.9 0.0 0.08 12.2 0.0 1.3 1 0 0 1 1 1 0 Cache 3/Cache 2 fusion domain HlyD_D23 PF16576.5 EME71229.1 - 7.6e-16 58.0 0.2 2.1e-13 50.0 0.1 1.9 1 1 1 2 2 2 2 Barrel-sandwich domain of CusB or HlyD membrane-fusion Biotin_lipoyl_2 PF13533.6 EME71229.1 - 2.1e-15 56.2 0.1 1.4e-13 50.5 0.0 3.1 3 0 0 3 3 3 1 Biotin-lipoyl like HlyD_3 PF13437.6 EME71229.1 - 1.6e-11 44.8 0.1 5.7e-07 30.2 0.1 2.5 2 0 0 2 2 2 2 HlyD family secretion protein Biotin_lipoyl PF00364.22 EME71229.1 - 0.00074 19.3 0.1 0.006 16.4 0.0 2.3 2 0 0 2 2 2 1 Biotin-requiring enzyme HlyD PF00529.20 EME71229.1 - 0.0025 17.6 0.8 0.2 11.6 0.3 2.4 2 0 0 2 2 2 2 HlyD membrane-fusion protein of T1SS ACR_tran PF00873.19 EME71230.1 - 0 1128.2 14.0 0 1128.0 14.0 1.0 1 0 0 1 1 1 1 AcrB/AcrD/AcrF family MMPL PF03176.15 EME71230.1 - 6e-11 41.8 12.0 6e-11 41.8 12.0 2.6 3 0 0 3 3 3 2 MMPL family SecD_SecF PF02355.16 EME71230.1 - 0.0072 15.7 25.3 0.078 12.3 13.8 2.5 2 0 0 2 2 2 2 Protein export membrane protein Peptidase_M48_N PF16491.5 EME71230.1 - 0.076 12.9 1.4 0.25 11.2 1.4 1.9 1 0 0 1 1 1 0 CAAX prenyl protease N-terminal, five membrane helices Cytochrom_C PF00034.21 EME71231.1 - 1.5e-08 35.7 0.0 2.2e-08 35.1 0.0 1.3 1 0 0 1 1 1 1 Cytochrome c Cytochrome_CBB3 PF13442.6 EME71231.1 - 0.00034 20.9 3.2 0.0042 17.4 2.9 2.2 1 1 0 1 1 1 1 Cytochrome C oxidase, cbb3-type, subunit III Pyr_redox_2 PF07992.14 EME71232.1 - 9.4e-53 179.3 0.0 1.2e-52 178.9 0.0 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Rbx_binding PF18113.1 EME71232.1 - 3.2e-24 84.5 0.1 5.7e-24 83.7 0.1 1.4 1 0 0 1 1 1 1 Rubredoxin binding C-terminal domain Pyr_redox PF00070.27 EME71232.1 - 1.3e-16 60.9 0.4 4.5e-13 49.6 0.0 3.2 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 EME71232.1 - 1.8e-05 24.9 2.2 0.17 12.2 0.1 2.5 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain K_oxygenase PF13434.6 EME71232.1 - 0.00013 21.3 0.0 0.0012 18.1 0.0 1.9 1 1 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) ThiF PF00899.21 EME71232.1 - 0.00015 21.3 1.2 0.0002 20.8 0.0 1.8 2 0 0 2 2 2 1 ThiF family TrkA_N PF02254.18 EME71232.1 - 0.00022 21.4 0.0 0.2 12.0 0.0 2.5 2 0 0 2 2 2 2 TrkA-N domain FAD_binding_3 PF01494.19 EME71232.1 - 0.0013 18.0 1.0 0.79 8.9 0.1 2.3 2 0 0 2 2 2 2 FAD binding domain 3HCDH_N PF02737.18 EME71232.1 - 0.004 17.1 0.7 0.0087 16.0 0.0 1.8 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Lycopene_cycl PF05834.12 EME71232.1 - 0.0067 15.5 0.5 2.3 7.2 0.1 2.5 2 0 0 2 2 2 2 Lycopene cyclase protein NAD_binding_7 PF13241.6 EME71232.1 - 0.0085 16.5 0.1 0.15 12.5 0.0 2.2 2 0 0 2 2 2 1 Putative NAD(P)-binding 2-Hacid_dh_C PF02826.19 EME71232.1 - 0.016 14.5 0.1 0.099 12.0 0.0 2.0 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 EME71232.1 - 0.025 14.9 0.1 0.18 12.0 0.0 2.2 2 0 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain Pyr_redox_3 PF13738.6 EME71232.1 - 0.032 13.5 0.0 2.9 7.1 0.0 2.1 1 1 1 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.16 EME71232.1 - 0.044 13.4 1.9 0.22 11.2 0.1 2.3 2 1 0 2 2 2 0 Ketopantoate reductase PanE/ApbA DUF1188 PF06690.11 EME71232.1 - 0.051 13.1 0.0 0.61 9.6 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1188) DAO PF01266.24 EME71232.1 - 0.07 12.7 11.3 1.7 8.1 0.1 3.6 2 2 1 4 4 4 0 FAD dependent oxidoreductase YiiD_C PF09500.10 EME71232.1 - 0.079 12.8 0.0 0.12 12.2 0.0 1.2 1 0 0 1 1 1 0 Putative thioesterase (yiiD_Cterm) FAD_binding_2 PF00890.24 EME71232.1 - 0.098 11.7 4.7 0.51 9.4 1.4 3.0 3 1 1 4 4 4 0 FAD binding domain Amino_oxidase PF01593.24 EME71232.1 - 0.13 11.5 0.0 0.24 10.7 0.0 1.4 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase F420_oxidored PF03807.17 EME71232.1 - 0.14 12.8 1.0 6.7 7.4 0.0 2.7 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent AlaDh_PNT_C PF01262.21 EME71232.1 - 0.18 11.1 1.9 2.5 7.3 0.0 2.2 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain UDPG_MGDP_dh_N PF03721.14 EME71232.1 - 0.2 11.2 0.9 0.33 10.5 0.1 1.7 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Rubredoxin PF00301.20 EME71233.1 - 9.2e-25 86.4 3.6 1e-24 86.3 3.6 1.0 1 0 0 1 1 1 1 Rubredoxin Zn-ribbon_8 PF09723.10 EME71233.1 - 0.0029 17.7 0.8 0.04 14.0 0.8 2.1 1 1 0 1 1 1 1 Zinc ribbon domain PHD_4 PF16866.5 EME71233.1 - 0.0084 16.2 1.6 0.023 14.7 1.6 1.7 1 1 0 1 1 1 1 PHD-finger zf-piccolo PF05715.13 EME71233.1 - 0.018 15.2 0.2 0.38 10.9 0.1 2.0 2 0 0 2 2 2 0 Piccolo Zn-finger zinc_ribbon_10 PF10058.9 EME71233.1 - 0.018 14.7 0.5 2 8.2 0.0 2.1 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein TF_Zn_Ribbon PF08271.12 EME71233.1 - 0.031 13.8 1.6 4.8 6.8 0.2 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding Rubredoxin_2 PF18073.1 EME71233.1 - 0.031 14.0 4.8 0.74 9.6 0.2 2.1 2 0 0 2 2 2 0 Rubredoxin metal binding domain zf-C2H2_3 PF13878.6 EME71233.1 - 0.053 13.3 0.4 1.9 8.4 0.2 2.2 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO zf-Mss51 PF13824.6 EME71233.1 - 0.054 13.6 1.0 1.4 9.0 0.1 2.1 2 0 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 A2L_zn_ribbon PF08792.10 EME71233.1 - 0.06 13.1 1.3 8 6.3 0.0 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain Zn_ribbon_SprT PF17283.2 EME71233.1 - 0.092 12.7 3.7 4.3 7.3 0.6 2.1 2 0 0 2 2 2 0 SprT-like zinc ribbon domain OrfB_Zn_ribbon PF07282.11 EME71233.1 - 0.12 12.4 0.2 14 5.7 0.0 2.1 2 0 0 2 2 2 0 Putative transposase DNA-binding domain zf_C2H2_ZHX PF18387.1 EME71233.1 - 0.12 12.0 1.7 4 7.2 0.5 2.1 2 0 0 2 2 2 0 Zinc-fingers and homeoboxes C2H2 finger domain zf-RanBP PF00641.18 EME71233.1 - 0.18 11.2 3.8 0.79 9.1 0.6 2.1 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others zf-C2H2 PF00096.26 EME71233.1 - 0.28 11.7 2.4 8.7 7.0 0.2 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type Rubredoxin PF00301.20 EME71234.1 - 7.4e-22 77.1 1.5 9.7e-22 76.7 1.5 1.2 1 0 0 1 1 1 1 Rubredoxin A2L_zn_ribbon PF08792.10 EME71234.1 - 0.018 14.8 0.6 3.2 7.6 0.0 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain TF_Zn_Ribbon PF08271.12 EME71234.1 - 0.019 14.4 1.0 2.2 7.9 0.1 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding Zn_ribbon_SprT PF17283.2 EME71234.1 - 0.038 13.9 1.7 4.1 7.4 0.1 2.1 2 0 0 2 2 2 0 SprT-like zinc ribbon domain ADK_lid PF05191.14 EME71234.1 - 0.043 13.8 0.4 6.6 6.8 0.0 2.3 2 1 0 2 2 2 0 Adenylate kinase, active site lid zf-C2H2_3 PF13878.6 EME71234.1 - 0.076 12.8 0.0 2.5 8.0 0.0 2.3 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO PHD_4 PF16866.5 EME71234.1 - 0.087 12.9 3.7 0.34 11.0 3.7 1.9 1 1 0 1 1 1 0 PHD-finger zf-RanBP PF00641.18 EME71234.1 - 0.088 12.2 5.2 0.45 9.9 1.0 2.1 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others Vps36-NZF-N PF16988.5 EME71234.1 - 0.25 10.8 2.9 8.3 5.9 0.1 2.2 2 0 0 2 2 2 0 Vacuolar protein sorting 36 NZF-N zinc-finger domain Rubredoxin_2 PF18073.1 EME71234.1 - 0.32 10.8 3.3 8.3 6.2 1.1 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain Rubrerythrin PF02915.17 EME71235.1 - 6.9e-19 68.6 20.4 3.3e-16 59.9 14.9 3.0 2 1 0 2 2 2 2 Rubrerythrin Ferritin PF00210.24 EME71235.1 - 8.7e-05 22.5 8.4 0.023 14.6 1.8 2.3 1 1 1 2 2 2 2 Ferritin-like domain DUF892 PF05974.12 EME71235.1 - 0.17 11.9 9.0 2.2 8.3 2.7 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF892) OEP PF02321.18 EME71236.1 - 3.3e-50 170.5 32.0 1.6e-25 90.1 10.7 2.0 2 0 0 2 2 2 2 Outer membrane efflux protein Lipoprotein_21 PF14041.6 EME71236.1 - 0.025 14.7 0.0 8.1 6.6 0.0 2.7 2 0 0 2 2 2 0 LppP/LprE lipoprotein LPAM_1 PF08139.12 EME71236.1 - 3.5 8.3 5.6 0.69 10.5 0.6 2.5 2 0 0 2 2 2 0 Prokaryotic membrane lipoprotein lipid attachment site Resolvase PF00239.21 EME71237.1 - 1.2e-08 35.1 0.4 1.8e-08 34.6 0.4 1.3 1 0 0 1 1 1 1 Resolvase, N terminal domain HTH_AsnC-type PF13404.6 EME71237.1 - 2.1e-06 27.4 0.8 6e-06 26.0 0.8 1.9 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_20 PF12840.7 EME71237.1 - 2.1e-05 24.5 0.3 7.2e-05 22.8 0.3 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 EME71237.1 - 2.3e-05 23.7 0.4 9.2e-05 21.8 0.0 2.2 2 1 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 HTH_30 PF13556.6 EME71237.1 - 5.1e-05 23.0 0.1 0.00014 21.6 0.1 1.8 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain HTH_24 PF13412.6 EME71237.1 - 0.00011 21.7 0.0 0.00025 20.5 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_38 PF13936.6 EME71237.1 - 0.00016 21.3 0.1 0.00095 18.9 0.1 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_29 PF13551.6 EME71237.1 - 0.00053 20.0 3.8 0.75 9.9 0.0 2.9 2 1 0 2 2 2 2 Winged helix-turn helix HTH_28 PF13518.6 EME71237.1 - 0.0014 18.8 0.0 0.0014 18.8 0.0 2.4 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_1 PF00126.27 EME71237.1 - 0.0031 17.4 2.2 0.0044 17.0 0.2 2.1 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_23 PF13384.6 EME71237.1 - 0.0047 16.7 0.0 0.011 15.5 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain HTH_8 PF02954.19 EME71237.1 - 0.0052 16.5 0.1 0.012 15.4 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family HTH_11 PF08279.12 EME71237.1 - 0.0058 16.6 0.0 0.011 15.6 0.0 1.5 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.7 EME71237.1 - 0.0091 15.9 6.8 0.13 12.2 4.6 2.8 2 1 0 2 2 2 1 MarR family HTH_10 PF04967.12 EME71237.1 - 0.011 15.5 0.0 0.065 13.1 0.0 2.2 2 0 0 2 2 2 0 HTH DNA binding domain HTH_7 PF02796.15 EME71237.1 - 0.014 15.4 0.0 0.023 14.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_32 PF13565.6 EME71237.1 - 0.016 15.8 1.5 0.046 14.3 1.5 1.8 1 0 0 1 1 1 0 Homeodomain-like domain HTH_IclR PF09339.10 EME71237.1 - 0.026 14.3 0.5 0.026 14.3 0.5 2.4 2 1 0 2 2 2 0 IclR helix-turn-helix domain HTH_50 PF18024.1 EME71237.1 - 0.029 14.0 0.1 0.069 12.8 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain Amidohydro_2 PF04909.14 EME71237.1 - 0.095 12.5 0.3 0.12 12.1 0.3 1.1 1 0 0 1 1 1 0 Amidohydrolase HTH_36 PF13730.6 EME71237.1 - 0.18 11.8 0.0 0.37 10.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain ACR_tran PF00873.19 EME71238.1 - 5.8e-298 991.0 12.5 6.6e-298 990.8 12.5 1.0 1 0 0 1 1 1 1 AcrB/AcrD/AcrF family SecD_SecF PF02355.16 EME71238.1 - 1.5e-06 27.7 25.7 0.00043 19.7 14.9 2.3 2 0 0 2 2 2 2 Protein export membrane protein ACR_tran PF00873.19 EME71239.1 - 0 1065.5 16.5 0 1065.3 16.5 1.0 1 0 0 1 1 1 1 AcrB/AcrD/AcrF family SecD_SecF PF02355.16 EME71239.1 - 0.0048 16.3 30.4 0.013 14.9 15.6 2.9 3 1 1 4 4 4 2 Protein export membrane protein HlyD_D23 PF16576.5 EME71240.1 - 1.3e-14 54.0 3.2 1.9e-14 53.4 3.2 1.3 1 0 0 1 1 1 1 Barrel-sandwich domain of CusB or HlyD membrane-fusion Biotin_lipoyl_2 PF13533.6 EME71240.1 - 4.7e-14 51.9 2.7 1.8e-13 50.1 0.5 3.0 3 0 0 3 3 3 1 Biotin-lipoyl like HlyD_3 PF13437.6 EME71240.1 - 6.4e-09 36.5 4.2 0.0026 18.4 0.2 3.1 3 0 0 3 3 3 2 HlyD family secretion protein Biotin_lipoyl PF00364.22 EME71240.1 - 0.00069 19.4 0.1 0.0029 17.4 0.1 2.1 1 0 0 1 1 1 1 Biotin-requiring enzyme PTS_EIIA_1 PF00358.20 EME71240.1 - 0.031 14.0 0.0 0.087 12.6 0.0 1.8 1 0 0 1 1 1 0 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 FIST PF08495.10 EME71241.1 - 8.9e-36 123.5 2.3 1.3e-35 123.0 0.4 1.9 2 0 0 2 2 2 1 FIST N domain FIST_C PF10442.9 EME71241.1 - 2.2e-34 118.2 0.6 3.1e-31 108.1 0.1 2.5 3 0 0 3 3 3 2 FIST C domain Response_reg PF00072.24 EME71242.1 - 1.3e-41 141.3 0.1 2.1e-25 89.0 0.0 2.5 2 0 0 2 2 2 2 Response regulator receiver domain HATPase_c PF02518.26 EME71242.1 - 3.5e-30 104.8 0.0 6.5e-30 103.9 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 EME71242.1 - 2.4e-19 69.1 0.1 2.4e-19 69.1 0.1 2.5 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.7 EME71242.1 - 6.7e-14 52.0 0.0 1.1e-09 38.5 0.0 2.7 2 0 0 2 2 2 2 PAS domain Hpt PF01627.23 EME71242.1 - 2.9e-13 49.9 1.6 2.9e-13 49.9 1.6 3.2 3 0 0 3 3 3 1 Hpt domain PAS_4 PF08448.10 EME71242.1 - 6.1e-12 45.8 0.6 6.5e-05 23.1 0.1 3.5 3 0 0 3 3 3 2 PAS fold PAS PF00989.25 EME71242.1 - 1.8e-09 37.6 0.0 3.8e-06 26.9 0.0 2.8 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.7 EME71242.1 - 6.9e-06 26.0 0.0 3.2e-05 23.8 0.0 2.2 1 0 0 1 1 1 1 PAS domain TetR_C_18 PF17923.1 EME71242.1 - 1.8 9.1 5.6 14 6.2 0.0 3.4 3 1 0 3 3 3 0 Tetracyclin repressor-like, C-terminal domain Abhydrolase_1 PF00561.20 EME71243.1 - 8.9e-25 87.8 0.0 1.8e-17 63.9 0.0 2.0 2 0 0 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 EME71243.1 - 6.7e-23 82.4 10.1 8.1e-23 82.2 10.1 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 EME71243.1 - 1.9e-09 37.2 0.2 6.5e-09 35.4 0.2 1.7 1 1 0 1 1 1 1 Serine aminopeptidase, S33 PGAP1 PF07819.13 EME71243.1 - 7.3e-06 25.9 0.0 0.0099 15.6 0.0 2.3 1 1 1 2 2 2 2 PGAP1-like protein Esterase PF00756.20 EME71243.1 - 8.8e-05 22.3 0.0 0.00012 21.9 0.0 1.4 1 0 0 1 1 1 1 Putative esterase Thioesterase PF00975.20 EME71243.1 - 0.0012 19.0 0.1 0.0015 18.7 0.1 1.2 1 0 0 1 1 1 1 Thioesterase domain Chlorophyllase PF07224.11 EME71243.1 - 0.015 14.3 0.0 0.025 13.6 0.0 1.3 1 0 0 1 1 1 0 Chlorophyllase Chlorophyllase2 PF12740.7 EME71243.1 - 0.019 13.9 0.0 0.029 13.3 0.0 1.3 1 0 0 1 1 1 0 Chlorophyllase enzyme Abhydrolase_4 PF08386.10 EME71243.1 - 0.027 14.6 0.0 0.064 13.4 0.0 1.6 2 0 0 2 2 2 0 TAP-like protein Ser_hydrolase PF06821.13 EME71243.1 - 0.03 14.2 0.1 0.15 11.9 0.1 2.0 2 0 0 2 2 2 0 Serine hydrolase DUF3141 PF11339.8 EME71243.1 - 0.2 10.1 0.0 0.25 9.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3141) DUF1057 PF06342.12 EME71243.1 - 0.3 10.1 0.0 0.44 9.5 0.0 1.2 1 0 0 1 1 1 0 Alpha/beta hydrolase of unknown function (DUF1057) PilZ PF07238.14 EME71244.1 - 0.0018 18.6 0.0 0.0021 18.3 0.0 1.1 1 0 0 1 1 1 1 PilZ domain ETC_C1_NDUFA4 PF04800.12 EME71246.1 - 1.6e-32 111.6 0.2 1.8e-32 111.4 0.2 1.0 1 0 0 1 1 1 1 ETC complex I subunit conserved region NAD_binding_11 PF14833.6 EME71246.1 - 0.074 13.3 0.0 0.29 11.4 0.0 1.8 2 0 0 2 2 2 0 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase OprB PF04966.12 EME71247.1 - 5.5e-67 226.8 4.1 7.7e-67 226.3 4.1 1.1 1 0 0 1 1 1 1 Carbohydrate-selective porin, OprB family BBP2 PF07642.11 EME71247.1 - 0.011 14.9 0.3 1.4 8.0 0.8 2.3 2 1 0 2 2 2 0 Putative beta-barrel porin-2, OmpL-like. bbp2 HTH_28 PF13518.6 EME71248.1 - 3.7e-08 33.4 0.0 1.4e-07 31.5 0.0 2.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.6 EME71248.1 - 5e-05 23.2 0.1 0.00023 21.1 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn helix HTH_23 PF13384.6 EME71248.1 - 0.0011 18.7 0.0 0.0024 17.6 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_Tnp_ISL3 PF13542.6 EME71248.1 - 0.081 12.4 0.0 0.19 11.2 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_32 PF13565.6 EME71248.1 - 0.15 12.7 0.0 0.15 12.7 0.0 3.2 3 1 0 3 3 3 0 Homeodomain-like domain Response_reg PF00072.24 EME71249.1 - 9.4e-18 64.4 0.0 1.2e-17 64.0 0.0 1.2 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 EME71249.1 - 2.9e-14 52.9 0.0 5.9e-14 51.9 0.0 1.5 2 0 0 2 2 2 1 Transcriptional regulatory protein, C terminal Ribosomal_60s PF00428.19 EME71249.1 - 0.069 13.7 0.6 0.11 13.0 0.6 1.3 1 0 0 1 1 1 0 60s Acidic ribosomal protein HATPase_c PF02518.26 EME71250.1 - 1.1e-23 83.8 0.0 2.1e-23 83.0 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 EME71250.1 - 2.3e-10 40.3 0.0 6.7e-10 38.9 0.0 1.8 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain Response_reg PF00072.24 EME71250.1 - 1e-09 38.5 0.1 2e-09 37.6 0.1 1.5 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c_2 PF13581.6 EME71250.1 - 0.0072 16.3 0.0 0.021 14.8 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain SLATT_1 PF18181.1 EME71250.1 - 0.058 13.3 1.7 0.12 12.3 1.7 1.5 1 0 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain 1 HATPase_c_5 PF14501.6 EME71250.1 - 0.06 13.3 0.0 0.13 12.2 0.0 1.5 1 0 0 1 1 1 0 GHKL domain HATPase_c_3 PF13589.6 EME71250.1 - 0.12 12.3 0.0 0.22 11.4 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF1987 PF09345.10 EME71252.1 - 1.5e-44 150.5 0.0 1.7e-44 150.4 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1987) HATPase_c PF02518.26 EME71253.1 - 8.6e-20 71.3 0.0 6.5e-19 68.5 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 EME71253.1 - 0.00021 21.3 0.5 0.0011 19.0 0.0 2.4 2 1 0 2 2 2 1 His Kinase A (phospho-acceptor) domain ERM PF00769.19 EME71253.1 - 0.002 18.0 1.2 0.0031 17.4 1.2 1.2 1 0 0 1 1 1 1 Ezrin/radixin/moesin family HD_3 PF13023.6 EME71253.1 - 0.1 12.5 0.5 0.17 11.8 0.5 1.4 1 0 0 1 1 1 0 HD domain HATPase_c_3 PF13589.6 EME71253.1 - 0.11 12.3 0.0 0.2 11.4 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF948 PF06103.11 EME71253.1 - 0.13 12.5 1.0 1.6 9.0 0.3 2.3 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) EzrA PF06160.12 EME71253.1 - 0.17 10.1 0.7 0.24 9.5 0.7 1.2 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA DUF883 PF05957.13 EME71253.1 - 0.18 12.4 7.3 2.9 8.6 2.0 3.0 2 1 1 3 3 3 0 Bacterial protein of unknown function (DUF883) HAUS-augmin3 PF14932.6 EME71253.1 - 0.32 10.5 2.2 0.51 9.9 2.2 1.3 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 3 Cortex-I_coil PF09304.10 EME71253.1 - 0.38 11.0 5.5 3.4 7.9 2.8 2.8 2 2 1 3 3 3 0 Cortexillin I, coiled coil DHR10 PF18595.1 EME71253.1 - 0.39 10.8 8.0 0.93 9.6 7.9 1.7 1 1 0 1 1 1 0 Designed helical repeat protein 10 domain TPR_MLP1_2 PF07926.12 EME71253.1 - 0.88 9.6 8.9 1.7 8.7 8.9 1.5 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein DegS PF05384.11 EME71253.1 - 1.4 8.4 5.6 5.2 6.5 0.1 2.9 2 1 1 3 3 3 0 Sensor protein DegS Rho_Binding PF08912.11 EME71253.1 - 2 9.3 5.1 0.34 11.7 1.1 1.8 2 0 0 2 2 1 0 Rho Binding FUSC PF04632.12 EME71253.1 - 3.5 6.0 10.9 0.5 8.8 5.7 1.8 1 1 1 2 2 2 0 Fusaric acid resistance protein family GGDEF PF00990.21 EME71254.1 - 1.4e-42 145.2 0.0 2.5e-42 144.4 0.0 1.4 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain PAS_4 PF08448.10 EME71254.1 - 3e-11 43.5 0.5 3.1e-10 40.3 0.0 2.8 3 0 0 3 3 3 1 PAS fold Response_reg PF00072.24 EME71254.1 - 2.7e-08 34.0 0.1 5.1e-08 33.1 0.1 1.4 1 0 0 1 1 1 1 Response regulator receiver domain PAS_8 PF13188.7 EME71254.1 - 2.4e-05 24.2 0.3 0.00024 21.1 0.1 2.6 2 0 0 2 2 2 1 PAS domain PAS PF00989.25 EME71254.1 - 0.00028 20.9 0.0 0.0006 19.8 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 EME71254.1 - 0.00045 20.4 0.0 0.0012 19.1 0.0 1.8 1 0 0 1 1 1 1 PAS domain PAS_7 PF12860.7 EME71254.1 - 0.0066 16.6 0.1 0.09 12.9 0.1 2.4 1 1 0 1 1 1 1 PAS fold SBP_bac_3 PF00497.20 EME71255.1 - 1.4e-11 44.2 0.0 2.2e-11 43.6 0.0 1.2 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Oxidored_FMN PF00724.20 EME71256.1 - 1.9e-72 244.4 0.0 2.5e-72 244.0 0.0 1.1 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family Pyr_redox_2 PF07992.14 EME71256.1 - 4.3e-26 91.8 0.1 2e-25 89.6 0.1 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 EME71256.1 - 3.1e-09 36.9 0.2 1.1e-08 35.2 0.2 2.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.6 EME71256.1 - 7.2e-09 35.3 0.0 0.0054 16.0 0.0 3.1 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 EME71256.1 - 2.2e-08 33.9 1.1 3.2e-08 33.3 1.1 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 EME71256.1 - 5.9e-08 31.8 1.6 6.2e-08 31.8 0.4 1.6 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_2 PF00890.24 EME71256.1 - 6.8e-08 32.0 2.1 1.4e-07 31.0 2.1 1.5 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.24 EME71256.1 - 9.2e-08 32.0 8.8 9.6e-06 25.4 0.8 4.0 3 1 0 3 3 3 2 FAD dependent oxidoreductase Pyr_redox PF00070.27 EME71256.1 - 9.6e-07 29.3 1.3 0.0056 17.2 0.2 4.2 5 0 0 5 5 5 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 EME71256.1 - 3.7e-05 23.0 1.0 6.4e-05 22.2 1.0 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A 3HCDH_N PF02737.18 EME71256.1 - 0.011 15.6 0.9 0.1 12.4 0.3 2.3 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Dus PF01207.17 EME71256.1 - 0.017 14.2 0.7 0.038 13.1 0.7 1.5 1 0 0 1 1 1 0 Dihydrouridine synthase (Dus) F420_oxidored PF03807.17 EME71256.1 - 0.031 14.9 0.1 54 4.5 0.0 3.6 3 0 0 3 3 3 0 NADP oxidoreductase coenzyme F420-dependent FAD_binding_3 PF01494.19 EME71256.1 - 0.032 13.5 0.2 0.032 13.5 0.2 1.5 2 0 0 2 2 2 0 FAD binding domain Thi4 PF01946.17 EME71256.1 - 0.046 12.9 0.4 0.1 11.8 0.0 1.7 2 0 0 2 2 2 0 Thi4 family AlaDh_PNT_C PF01262.21 EME71256.1 - 0.048 13.0 1.2 0.078 12.3 0.1 1.8 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_9 PF13454.6 EME71256.1 - 0.072 13.1 1.0 0.52 10.3 0.1 2.3 2 0 0 2 2 2 0 FAD-NAD(P)-binding UDPG_MGDP_dh_N PF03721.14 EME71256.1 - 0.074 12.6 0.1 1.8 8.1 0.0 2.5 3 0 0 3 3 3 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Lycopene_cycl PF05834.12 EME71256.1 - 0.11 11.6 0.7 0.2 10.6 0.4 1.6 2 0 0 2 2 2 0 Lycopene cyclase protein NAD_Gly3P_dh_N PF01210.23 EME71256.1 - 0.15 12.0 0.2 4 7.4 0.1 2.8 3 0 0 3 3 3 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus K_oxygenase PF13434.6 EME71256.1 - 0.28 10.3 0.0 45 3.0 0.0 2.8 3 0 0 3 3 3 0 L-lysine 6-monooxygenase (NADPH-requiring) HI0933_like PF03486.14 EME71257.1 - 4.2e-130 434.1 0.0 4.7e-130 434.0 0.0 1.0 1 0 0 1 1 1 1 HI0933-like protein FAD_binding_2 PF00890.24 EME71257.1 - 9.9e-09 34.8 4.5 1.2e-08 34.5 0.7 2.2 1 1 0 2 2 2 1 FAD binding domain Pyr_redox_3 PF13738.6 EME71257.1 - 1.3e-08 34.4 0.4 0.0042 16.4 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 EME71257.1 - 2e-08 34.2 5.9 3.9e-05 23.4 1.0 2.6 1 1 2 3 3 3 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 EME71257.1 - 1.3e-07 31.8 0.1 3.9e-07 30.2 0.1 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 EME71257.1 - 4e-06 26.3 0.2 1.1e-05 24.9 0.2 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 EME71257.1 - 1e-05 26.0 0.2 0.00082 19.9 0.5 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 EME71257.1 - 0.00016 21.2 0.8 0.00018 21.0 0.8 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase AlaDh_PNT_C PF01262.21 EME71257.1 - 0.00024 20.5 0.0 0.00043 19.7 0.0 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain GIDA PF01134.22 EME71257.1 - 0.0007 18.8 3.6 0.002 17.2 0.4 2.4 3 0 0 3 3 3 1 Glucose inhibited division protein A FAD_binding_3 PF01494.19 EME71257.1 - 0.00077 18.8 0.1 0.0012 18.2 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain Lycopene_cycl PF05834.12 EME71257.1 - 0.0021 17.1 1.1 0.014 14.5 0.7 2.0 2 0 0 2 2 2 1 Lycopene cyclase protein Thi4 PF01946.17 EME71257.1 - 0.0023 17.2 1.1 0.0038 16.5 0.1 1.8 2 0 0 2 2 2 1 Thi4 family UDPG_MGDP_dh_N PF03721.14 EME71257.1 - 0.025 14.2 0.2 0.038 13.6 0.2 1.2 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Glu_dehyd_C PF16912.5 EME71257.1 - 0.04 13.4 0.0 0.069 12.6 0.0 1.4 1 0 0 1 1 1 0 Glucose dehydrogenase C-terminus GDI PF00996.18 EME71257.1 - 0.19 10.2 0.0 0.27 9.7 0.0 1.1 1 0 0 1 1 1 0 GDP dissociation inhibitor 3HCDH_N PF02737.18 EME71257.1 - 0.25 11.2 0.4 0.42 10.5 0.4 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PglD_N PF17836.1 EME71257.1 - 0.29 11.8 1.2 0.37 11.5 0.0 1.8 2 0 0 2 2 1 0 PglD N-terminal domain Abhydrolase_1 PF00561.20 EME71258.1 - 0.0052 16.4 0.0 0.027 14.1 0.0 2.3 1 1 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 EME71258.1 - 0.063 12.5 0.2 0.52 9.5 0.0 2.3 2 1 0 2 2 2 0 Serine aminopeptidase, S33 Peptidase_S9 PF00326.21 EME71258.1 - 0.14 11.6 0.0 0.27 10.7 0.0 1.4 1 0 0 1 1 1 0 Prolyl oligopeptidase family Tropomyosin_1 PF12718.7 EME71259.1 - 0.0014 18.8 4.7 0.0019 18.4 1.3 2.2 2 0 0 2 2 2 1 Tropomyosin like PL48 PF15903.5 EME71259.1 - 0.009 15.0 0.1 0.015 14.3 0.1 1.3 1 0 0 1 1 1 1 Filopodia upregulated, FAM65 MSP1a PF11670.8 EME71259.1 - 0.017 14.4 0.3 0.019 14.3 0.3 1.1 1 0 0 1 1 1 0 Major surface protein 1a (MSP1a) ABC_tran_CTD PF16326.5 EME71259.1 - 0.017 15.3 1.2 0.039 14.2 1.2 1.6 1 0 0 1 1 1 0 ABC transporter C-terminal domain DUF2207 PF09972.9 EME71259.1 - 0.039 12.7 0.6 0.057 12.2 0.3 1.2 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) Sm_like PF16243.5 EME71259.1 - 0.041 14.0 0.0 0.12 12.6 0.1 1.7 2 0 0 2 2 2 0 Sm_like domain MSC PF09402.10 EME71259.1 - 0.078 12.4 0.2 0.092 12.2 0.2 1.1 1 0 0 1 1 1 0 Man1-Src1p-C-terminal domain FemAB_like PF04339.12 EME71260.1 - 1.5e-152 508.0 0.0 1.7e-152 507.9 0.0 1.0 1 0 0 1 1 1 1 Peptidogalycan biosysnthesis/recognition Acetyltransf_6 PF13480.7 EME71260.1 - 2.2e-11 44.1 5.5 2.2e-11 44.1 5.5 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FAD_binding_4 PF01565.23 EME71261.1 - 1.1e-05 25.2 6.8 0.00022 21.0 0.5 3.7 4 0 0 4 4 4 2 FAD binding domain DSPc PF00782.20 EME71262.1 - 0.00087 19.1 0.0 0.0012 18.6 0.0 1.3 1 0 0 1 1 1 1 Dual specificity phosphatase, catalytic domain CDKN3 PF05706.12 EME71262.1 - 0.023 14.4 0.0 0.053 13.2 0.0 1.5 2 0 0 2 2 2 0 Cyclin-dependent kinase inhibitor 3 (CDKN3) Y_phosphatase PF00102.27 EME71262.1 - 0.036 13.6 0.0 0.041 13.5 0.0 1.2 1 0 0 1 1 1 0 Protein-tyrosine phosphatase PTPlike_phytase PF14566.6 EME71262.1 - 0.19 11.9 0.0 0.28 11.3 0.0 1.3 1 0 0 1 1 1 0 Inositol hexakisphosphate Sigma54_activat PF00158.26 EME71263.1 - 4.2e-71 238.1 0.3 5.8e-71 237.6 0.3 1.2 1 0 0 1 1 1 1 Sigma-54 interaction domain Sigma54_activ_2 PF14532.6 EME71263.1 - 1.2e-20 74.1 0.0 2.6e-20 72.9 0.0 1.6 1 1 0 1 1 1 1 Sigma-54 interaction domain HTH_8 PF02954.19 EME71263.1 - 1.7e-14 53.3 0.2 6.3e-14 51.5 0.2 2.0 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family GAF PF01590.26 EME71263.1 - 8.5e-11 42.6 0.0 1.7e-10 41.6 0.0 1.5 1 0 0 1 1 1 1 GAF domain AAA_5 PF07728.14 EME71263.1 - 2.7e-10 40.4 0.1 3.6e-09 36.7 0.0 2.2 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) GAF_2 PF13185.6 EME71263.1 - 7.9e-09 35.9 0.0 1.6e-08 34.9 0.0 1.5 1 0 0 1 1 1 1 GAF domain AAA PF00004.29 EME71263.1 - 1.3e-06 28.9 0.1 3.2e-06 27.6 0.0 1.7 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.21 EME71263.1 - 2.1e-06 27.3 0.6 4.3e-05 23.0 0.6 2.3 1 1 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_2 PF07724.14 EME71263.1 - 1.8e-05 24.9 0.0 4.4e-05 23.7 0.0 1.6 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) GAF_3 PF13492.6 EME71263.1 - 4.2e-05 23.9 0.3 0.00015 22.1 0.0 2.0 2 0 0 2 2 2 1 GAF domain TIP39 PF14980.6 EME71263.1 - 0.025 14.5 0.0 0.057 13.3 0.0 1.6 1 0 0 1 1 1 0 TIP39 peptide HTH_28 PF13518.6 EME71263.1 - 0.065 13.4 0.2 0.15 12.2 0.2 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain AAA_16 PF13191.6 EME71263.1 - 0.067 13.6 0.2 0.25 11.7 0.1 2.1 2 1 0 2 2 2 0 AAA ATPase domain AAA_30 PF13604.6 EME71263.1 - 0.087 12.5 0.1 0.2 11.4 0.1 1.5 1 0 0 1 1 1 0 AAA domain HTH_31 PF13560.6 EME71263.1 - 1.5 9.3 4.1 0.79 10.1 0.5 2.5 3 0 0 3 3 2 0 Helix-turn-helix domain HTH_28 PF13518.6 EME71265.1 - 7.8e-06 25.9 0.2 1.6e-05 24.9 0.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.6 EME71265.1 - 0.00034 20.6 0.1 0.00064 19.7 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn helix Resolvase PF00239.21 EME71266.1 - 6.1e-08 32.9 0.0 6.6e-08 32.8 0.0 1.0 1 0 0 1 1 1 1 Resolvase, N terminal domain OppC_N PF12911.7 EME71267.1 - 3.5 7.7 7.3 41 4.3 7.3 2.9 1 1 0 1 1 1 0 N-terminal TM domain of oligopeptide transport permease C Bac_transf PF02397.16 EME71268.1 - 1.8e-60 203.7 0.0 2.5e-60 203.2 0.0 1.2 1 0 0 1 1 1 1 Bacterial sugar transferase CoA_binding_3 PF13727.6 EME71268.1 - 2.7e-09 37.3 0.9 5.6e-09 36.3 0.9 1.5 1 0 0 1 1 1 1 CoA-binding domain Autotransporter PF03797.19 EME71269.1 - 7.2e-20 71.7 19.8 7.2e-20 71.7 19.8 2.1 2 0 0 2 2 2 1 Autotransporter beta-domain Hydrolase_4 PF12146.8 EME71270.1 - 2.2e-07 30.4 0.1 5.9e-05 22.4 0.0 2.0 1 1 1 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 EME71270.1 - 4.7e-05 23.1 0.2 0.00027 20.7 0.1 1.8 1 1 1 2 2 2 1 alpha/beta hydrolase fold FSH1 PF03959.13 EME71270.1 - 0.0027 17.4 0.1 0.0053 16.5 0.1 1.4 1 1 0 1 1 1 1 Serine hydrolase (FSH1) Abhydrolase_6 PF12697.7 EME71270.1 - 0.003 18.2 5.9 0.014 16.1 4.8 1.8 1 1 1 2 2 2 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.7 EME71270.1 - 0.0035 17.1 0.0 0.022 14.5 0.0 1.9 1 1 1 2 2 2 1 Alpha/beta hydrolase family DLH PF01738.18 EME71270.1 - 0.02 14.5 0.1 0.02 14.4 0.1 1.2 1 1 0 1 1 1 0 Dienelactone hydrolase family Lipase_3 PF01764.25 EME71270.1 - 0.042 13.7 0.1 0.065 13.1 0.1 1.3 1 0 0 1 1 1 0 Lipase (class 3) Abhydrolase_3 PF07859.13 EME71270.1 - 0.053 13.4 0.6 0.12 12.2 0.3 1.6 1 1 1 2 2 2 0 alpha/beta hydrolase fold Esterase PF00756.20 EME71270.1 - 0.092 12.4 0.0 0.11 12.2 0.0 1.1 1 0 0 1 1 1 0 Putative esterase Peptidase_S9 PF00326.21 EME71270.1 - 0.13 11.7 0.2 0.25 10.8 0.2 1.6 1 1 0 1 1 1 0 Prolyl oligopeptidase family Esterase_phd PF10503.9 EME71270.1 - 0.21 11.1 3.0 0.55 9.7 2.9 1.7 1 1 0 1 1 1 0 Esterase PHB depolymerase AXE1 PF05448.12 EME71270.1 - 0.6 8.7 1.5 0.68 8.6 0.8 1.4 2 0 0 2 2 2 0 Acetyl xylan esterase (AXE1) tRNA_anti-like PF12869.7 EME71271.1 - 0.098 12.3 2.3 0.11 12.2 2.3 1.0 1 0 0 1 1 1 0 tRNA_anti-like CsbD PF05532.12 EME71271.1 - 0.2 11.6 11.8 0.37 10.7 11.8 1.5 1 1 0 1 1 1 0 CsbD-like DUF2946 PF11162.8 EME71271.1 - 0.22 12.2 9.0 0.22 12.2 8.4 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2946) Lipase_GDSL_2 PF13472.6 EME71272.1 - 3.4e-06 27.6 0.0 1.1e-05 25.9 0.0 1.8 1 1 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family Glycos_transf_1 PF00534.20 EME71273.1 - 3.6e-21 75.5 0.0 7.5e-21 74.4 0.0 1.5 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 EME71273.1 - 1e-16 61.6 0.0 1.5e-16 61.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 EME71273.1 - 2.7e-06 27.7 0.0 5.8e-06 26.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 EME71273.1 - 7.9e-05 22.7 0.0 0.00015 21.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Transglut_core3 PF13471.6 EME71274.1 - 2e-25 89.0 0.2 3.2e-25 88.3 0.2 1.3 1 0 0 1 1 1 1 Transglutaminase-like superfamily Transglut_core PF01841.19 EME71274.1 - 0.099 13.1 0.1 0.14 12.6 0.1 1.3 1 0 0 1 1 1 0 Transglutaminase-like superfamily PqqD PF05402.12 EME71275.1 - 1.4e-14 54.1 0.1 1.7e-14 53.8 0.1 1.1 1 0 0 1 1 1 1 Coenzyme PQQ synthesis protein D (PqqD) Sulfotransfer_1 PF00685.27 EME71276.1 - 4e-19 69.1 0.0 5.4e-19 68.7 0.0 1.1 1 0 0 1 1 1 1 Sulfotransferase domain Sulfotransfer_3 PF13469.6 EME71276.1 - 1.4e-06 28.9 0.0 2.4e-06 28.1 0.0 1.3 1 0 0 1 1 1 1 Sulfotransferase family N_Asn_amidohyd PF14736.6 EME71276.1 - 0.2 10.7 0.0 0.38 9.9 0.0 1.5 1 0 0 1 1 1 0 Protein N-terminal asparagine amidohydrolase PEPCK_ATP PF01293.20 EME71277.1 - 0.007 15.1 0.0 0.0093 14.7 0.0 1.1 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxykinase AAA_30 PF13604.6 EME71277.1 - 0.0094 15.7 0.1 0.017 14.8 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 EME71277.1 - 0.016 15.0 0.1 0.041 13.6 0.1 1.7 1 1 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.6 EME71277.1 - 0.018 15.3 0.5 0.061 13.6 0.5 1.9 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 EME71277.1 - 0.047 13.6 0.0 0.068 13.1 0.0 1.2 1 0 0 1 1 1 0 RsgA GTPase ABC_tran PF00005.27 EME71277.1 - 0.051 14.1 0.0 0.09 13.3 0.0 1.4 1 1 0 1 1 1 0 ABC transporter ATP_bind_2 PF03668.15 EME71277.1 - 0.056 12.7 0.0 0.079 12.2 0.0 1.1 1 0 0 1 1 1 0 P-loop ATPase protein family AAA_33 PF13671.6 EME71277.1 - 0.062 13.5 0.0 0.092 12.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain Hpr_kinase_C PF07475.12 EME71277.1 - 0.1 12.1 0.1 0.16 11.5 0.1 1.3 1 0 0 1 1 1 0 HPr Serine kinase C-terminal domain AAA_23 PF13476.6 EME71277.1 - 0.15 12.5 0.0 0.23 11.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain Hpr_kinase_C PF07475.12 EME71278.1 - 0.026 14.0 0.1 0.043 13.3 0.1 1.3 1 0 0 1 1 1 0 HPr Serine kinase C-terminal domain Asn_synthase PF00733.21 EME71279.1 - 8.3e-30 104.6 0.0 2.5e-29 103.1 0.0 1.7 1 1 0 1 1 1 1 Asparagine synthase GATase_7 PF13537.6 EME71279.1 - 1.1e-14 54.4 0.0 1.9e-14 53.7 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 EME71279.1 - 2.1e-10 40.9 0.0 4.7e-10 39.8 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain NTP_transf_5 PF14907.6 EME71280.1 - 6.5e-46 157.0 0.6 8.7e-46 156.6 0.6 1.1 1 0 0 1 1 1 1 Uncharacterised nucleotidyltransferase ABC_tran PF00005.27 EME71281.1 - 1.7e-31 109.6 0.0 2.6e-31 109.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 EME71281.1 - 3.6e-10 39.7 0.1 3.1e-07 30.1 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.6 EME71281.1 - 0.00076 19.7 0.5 0.012 15.8 0.5 2.6 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_22 PF13401.6 EME71281.1 - 0.0025 18.1 0.1 0.017 15.4 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 EME71281.1 - 0.0026 18.1 0.5 0.0066 16.8 0.5 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_21 PF13304.6 EME71281.1 - 0.0044 16.9 0.1 0.43 10.3 0.0 2.2 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 EME71281.1 - 0.0048 16.6 0.5 0.011 15.4 0.5 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_membrane PF00664.23 EME71281.1 - 0.027 14.1 5.5 0.088 12.4 5.7 1.7 1 1 1 2 2 2 0 ABC transporter transmembrane region RsgA_GTPase PF03193.16 EME71281.1 - 0.09 12.7 0.3 0.21 11.4 0.3 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_25 PF13481.6 EME71281.1 - 0.16 11.5 2.5 1.6 8.2 1.2 2.7 1 1 1 2 2 2 0 AAA domain PEPCK_ATP PF01293.20 EME71281.1 - 0.25 10.0 0.1 0.36 9.5 0.1 1.2 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxykinase DDE_Tnp_Tn3 PF01526.17 EME71282.1 - 3.2e-145 483.8 0.0 5.5e-145 483.0 0.0 1.4 1 0 0 1 1 1 1 Tn3 transposase DDE domain DUF4158 PF13700.6 EME71282.1 - 1.3e-42 145.5 1.4 3e-42 144.3 1.4 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4158) Lactamase_B_2 PF12706.7 EME71283.1 - 8.7e-06 25.4 0.1 1.2e-05 25.0 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 EME71283.1 - 0.0015 18.5 0.0 0.002 18.0 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain DUF4147 PF13660.6 EME71284.1 - 1.4e-80 270.1 3.6 2.1e-80 269.5 3.6 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4147) Mem_trans PF03547.18 EME71284.1 - 1.4e-12 46.7 11.9 4e-08 32.1 8.1 2.1 1 1 0 2 2 2 2 Membrane transport protein DHDPS PF00701.22 EME71285.1 - 6.1e-34 117.0 0.0 6.8e-34 116.9 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family Engrail_1_C_sig PF10525.9 EME71285.1 - 0.72 9.1 2.1 1.4 8.2 2.1 1.4 1 0 0 1 1 1 0 Engrailed homeobox C-terminal signature domain SBP_bac_3 PF00497.20 EME71286.1 - 1.2e-40 139.3 0.0 1.5e-40 139.0 0.0 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Lig_chan-Glu_bd PF10613.9 EME71286.1 - 5.2e-06 26.6 0.0 0.00027 21.1 0.0 2.6 2 1 0 2 2 2 1 Ligated ion channel L-glutamate- and glycine-binding site HATPase_c PF02518.26 EME71287.1 - 1.7e-18 67.2 0.0 3.4e-18 66.2 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 EME71287.1 - 2.2e-17 63.2 0.0 5.5e-17 61.9 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS_3 PF08447.12 EME71287.1 - 2.3e-13 50.3 0.0 7e-13 48.7 0.0 1.9 2 0 0 2 2 2 1 PAS fold PAS_4 PF08448.10 EME71287.1 - 1e-10 41.8 0.1 3.2e-10 40.2 0.1 1.9 1 0 0 1 1 1 1 PAS fold PAS PF00989.25 EME71287.1 - 5.9e-10 39.1 0.0 1.4e-09 37.9 0.0 1.6 1 0 0 1 1 1 1 PAS fold dCache_1 PF02743.18 EME71287.1 - 1.6e-08 34.7 0.0 2.5e-08 34.0 0.0 1.3 1 0 0 1 1 1 1 Cache domain PAS_8 PF13188.7 EME71287.1 - 0.0013 18.7 0.0 0.0042 17.1 0.0 1.9 1 0 0 1 1 1 1 PAS domain DUF202 PF02656.15 EME71287.1 - 2.3 8.7 7.7 0.45 11.0 1.8 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF202) cNMP_binding PF00027.29 EME71288.1 - 1.1e-22 79.9 0.0 2e-22 79.0 0.0 1.5 1 0 0 1 1 1 1 Cyclic nucleotide-binding domain HTH_Crp_2 PF13545.6 EME71288.1 - 9.9e-18 63.9 0.1 2.3e-17 62.7 0.1 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR_2 PF12802.7 EME71288.1 - 4.7e-07 29.6 0.7 3.8e-05 23.5 0.0 3.1 4 0 0 4 4 2 1 MarR family Crp PF00325.20 EME71288.1 - 1.3e-06 27.9 0.0 2.8e-06 26.9 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, crp family HTH_23 PF13384.6 EME71288.1 - 3.2e-06 26.8 0.0 9.6e-06 25.2 0.0 1.8 2 0 0 2 2 1 1 Homeodomain-like domain HTH_24 PF13412.6 EME71288.1 - 5.1e-05 22.7 0.0 0.00012 21.6 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_28 PF13518.6 EME71288.1 - 0.00016 21.7 0.0 0.00036 20.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain GntR PF00392.21 EME71288.1 - 0.00024 20.7 0.0 0.00063 19.3 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family Sigma70_r4 PF04545.16 EME71288.1 - 0.0005 19.5 0.0 0.0013 18.2 0.0 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 Rrf2 PF02082.20 EME71288.1 - 0.00067 19.9 0.1 0.0013 19.0 0.1 1.6 1 0 0 1 1 1 1 Transcriptional regulator TrmB PF01978.19 EME71288.1 - 0.00069 19.4 0.0 0.0021 17.9 0.0 1.8 2 0 0 2 2 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 EME71288.1 - 0.003 17.5 0.0 0.011 15.7 0.0 2.0 1 0 0 1 1 1 1 MarR family HTH_29 PF13551.6 EME71288.1 - 0.0053 16.7 0.0 0.031 14.3 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn helix HTH_CodY PF08222.11 EME71288.1 - 0.0066 16.0 0.0 0.014 14.9 0.0 1.5 1 0 0 1 1 1 1 CodY helix-turn-helix domain HTH_11 PF08279.12 EME71288.1 - 0.0087 16.0 0.1 0.02 14.8 0.1 1.6 1 0 0 1 1 1 1 HTH domain HTH_3 PF01381.22 EME71288.1 - 0.025 14.7 0.1 0.059 13.4 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix HTH_36 PF13730.6 EME71288.1 - 0.027 14.4 0.0 0.063 13.2 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain ssDNA-exonuc_C PF10141.9 EME71288.1 - 0.03 13.9 0.0 0.61 9.7 0.0 2.0 1 1 1 2 2 2 0 Single-strand DNA-specific exonuclease, C terminal domain Sigma70_r4_2 PF08281.12 EME71288.1 - 0.036 13.7 0.0 0.1 12.3 0.0 1.8 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_19 PF12844.7 EME71288.1 - 0.057 13.5 0.1 0.18 11.8 0.0 1.9 1 1 0 1 1 1 0 Helix-turn-helix domain DUF603 PF04645.12 EME71288.1 - 0.059 13.1 0.0 0.094 12.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF603 HTH_10 PF04967.12 EME71288.1 - 0.062 13.1 0.1 0.17 11.7 0.1 1.7 1 0 0 1 1 1 0 HTH DNA binding domain Sigma70_r3 PF04539.16 EME71288.1 - 0.081 13.0 0.0 0.24 11.5 0.0 1.7 1 0 0 1 1 1 0 Sigma-70 region 3 FeoC PF09012.10 EME71288.1 - 0.092 12.8 0.0 0.36 11.0 0.0 2.0 2 0 0 2 2 1 0 FeoC like transcriptional regulator HTH_38 PF13936.6 EME71288.1 - 0.11 12.3 0.0 0.25 11.1 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Phage_CI_repr PF07022.13 EME71288.1 - 0.12 12.4 0.1 0.3 11.2 0.0 1.7 2 0 0 2 2 1 0 Bacteriophage CI repressor helix-turn-helix domain Fe_dep_repress PF01325.19 EME71288.1 - 0.15 12.3 0.0 0.31 11.3 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Phage_rep_O PF04492.13 EME71288.1 - 0.17 12.5 0.0 3.5 8.3 0.0 2.7 2 0 0 2 2 2 0 Bacteriophage replication protein O BPD_transp_2 PF02653.16 EME71289.1 - 8.4e-38 130.1 33.6 1.3e-37 129.5 33.6 1.2 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 EME71290.1 - 1.4e-40 139.2 40.2 1.7e-40 138.9 40.2 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Peripla_BP_6 PF13458.6 EME71291.1 - 3e-84 283.6 11.0 3.6e-84 283.3 11.0 1.0 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 EME71291.1 - 3.3e-17 62.5 1.5 2.3e-11 43.3 0.1 2.0 2 0 0 2 2 2 2 Periplasmic binding protein domain ABC_tran PF00005.27 EME71292.1 - 3.3e-25 89.2 0.0 5.1e-25 88.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 EME71292.1 - 3.3e-08 33.7 0.2 0.0013 18.6 0.1 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 EME71292.1 - 0.0021 17.5 0.1 0.11 11.9 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 EME71292.1 - 0.017 15.7 0.0 0.023 15.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 EME71292.1 - 0.017 15.5 0.0 0.036 14.5 0.0 1.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 EME71292.1 - 0.044 13.7 0.2 0.071 13.0 0.2 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_16 PF13191.6 EME71292.1 - 0.045 14.1 0.1 0.07 13.5 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain NACHT PF05729.12 EME71292.1 - 0.075 12.9 0.2 0.11 12.4 0.2 1.5 1 1 1 2 2 2 0 NACHT domain AAA_22 PF13401.6 EME71292.1 - 0.08 13.2 0.5 0.62 10.3 0.5 2.1 1 1 0 1 1 1 0 AAA domain NDK PF00334.19 EME71292.1 - 0.081 12.9 0.0 0.23 11.5 0.0 1.7 1 0 0 1 1 1 0 Nucleoside diphosphate kinase AAA_29 PF13555.6 EME71292.1 - 0.088 12.6 0.1 0.18 11.6 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_30 PF13604.6 EME71292.1 - 0.15 11.8 0.3 0.32 10.7 0.3 1.5 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 EME71292.1 - 0.16 11.6 0.0 0.28 10.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain DLIC PF05783.11 EME71292.1 - 0.21 10.4 0.1 0.29 9.9 0.1 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) ABC_tran PF00005.27 EME71293.1 - 2.2e-28 99.5 0.0 3e-28 99.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.8 EME71293.1 - 3.7e-09 36.3 0.1 7.7e-09 35.3 0.1 1.6 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_21 PF13304.6 EME71293.1 - 8e-07 29.1 0.3 0.015 15.1 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 EME71293.1 - 0.00017 21.3 0.0 0.00033 20.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 EME71293.1 - 0.00023 20.7 0.0 0.00047 19.7 0.0 1.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 EME71293.1 - 0.00096 19.7 0.0 0.0012 19.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_27 PF13514.6 EME71293.1 - 0.0037 16.9 0.0 0.017 14.8 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 EME71293.1 - 0.011 16.0 0.1 0.018 15.3 0.1 1.5 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 EME71293.1 - 0.013 15.3 0.8 0.079 12.7 0.8 2.2 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.15 EME71293.1 - 0.036 14.0 0.0 0.052 13.5 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_15 PF13175.6 EME71293.1 - 0.059 13.1 0.0 0.076 12.7 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain SRP54 PF00448.22 EME71293.1 - 0.061 12.9 0.1 0.11 12.2 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain GATase_2 PF00310.21 EME71294.1 - 6.5e-185 614.8 0.0 8.2e-185 614.5 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Glu_synthase PF01645.17 EME71294.1 - 2.1e-156 520.7 0.4 1.1e-153 511.8 0.2 2.2 2 0 0 2 2 2 2 Conserved region in glutamate synthase Glu_syn_central PF04898.14 EME71294.1 - 2.3e-115 384.9 0.0 3.9e-115 384.1 0.0 1.4 1 0 0 1 1 1 1 Glutamate synthase central domain GXGXG PF01493.19 EME71294.1 - 2e-81 272.1 6.1 3.6e-81 271.3 6.1 1.4 1 0 0 1 1 1 1 GXGXG motif FMN_dh PF01070.18 EME71294.1 - 0.00012 21.3 0.1 0.00064 18.9 0.3 2.0 2 0 0 2 2 2 1 FMN-dependent dehydrogenase Pyr_redox_2 PF07992.14 EME71295.1 - 1.9e-28 99.6 1.6 4.4e-28 98.4 1.6 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_20 PF14691.6 EME71295.1 - 9.6e-26 89.8 0.3 1.5e-25 89.2 0.3 1.3 1 0 0 1 1 1 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Pyr_redox PF00070.27 EME71295.1 - 1.2e-09 38.6 1.3 0.0024 18.4 1.1 2.9 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 EME71295.1 - 6.3e-09 35.9 0.2 6.3e-09 35.9 0.2 1.9 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.7 EME71295.1 - 1.3e-08 34.6 0.8 1.3e-08 34.6 0.8 1.6 2 0 0 2 2 1 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 EME71295.1 - 9.9e-08 31.6 1.0 0.002 17.4 0.4 3.3 1 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 EME71295.1 - 6.9e-07 28.3 1.8 6.9e-07 28.3 1.8 2.4 3 0 0 3 3 3 1 HI0933-like protein AlaDh_PNT_C PF01262.21 EME71295.1 - 2.9e-05 23.5 1.7 0.018 14.3 0.2 2.2 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_7 PF13241.6 EME71295.1 - 3.7e-05 24.1 0.3 0.067 13.6 0.1 2.6 2 0 0 2 2 2 2 Putative NAD(P)-binding FAD_binding_2 PF00890.24 EME71295.1 - 4e-05 22.9 3.5 4e-05 22.9 3.5 2.2 2 1 0 3 3 3 1 FAD binding domain FAD_binding_3 PF01494.19 EME71295.1 - 4.6e-05 22.8 1.0 4.6e-05 22.8 1.0 1.7 2 0 0 2 2 2 1 FAD binding domain DAO PF01266.24 EME71295.1 - 5.8e-05 22.8 0.3 5.8e-05 22.8 0.3 2.7 2 1 1 3 3 3 1 FAD dependent oxidoreductase Amino_oxidase PF01593.24 EME71295.1 - 6.6e-05 22.4 2.2 7.7e-05 22.2 0.4 1.9 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase GIDA PF01134.22 EME71295.1 - 7.5e-05 22.0 2.9 7.5e-05 22.0 2.9 2.4 2 0 0 2 2 2 1 Glucose inhibited division protein A Thi4 PF01946.17 EME71295.1 - 0.00047 19.5 0.1 0.00047 19.5 0.1 1.6 2 0 0 2 2 2 1 Thi4 family Lycopene_cycl PF05834.12 EME71295.1 - 0.00063 18.9 3.1 0.034 13.2 1.6 2.3 2 0 0 2 2 2 1 Lycopene cyclase protein 3HCDH_N PF02737.18 EME71295.1 - 0.0031 17.4 0.4 0.011 15.6 0.4 1.8 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DJ-1_PfpI PF01965.24 EME71295.1 - 0.0047 16.8 3.1 0.014 15.2 0.2 2.6 1 1 2 3 3 3 1 DJ-1/PfpI family NAD_Gly3P_dh_N PF01210.23 EME71295.1 - 0.0092 16.0 0.0 0.017 15.1 0.0 1.4 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TrkA_N PF02254.18 EME71295.1 - 0.0095 16.2 0.1 0.087 13.1 0.0 2.2 2 0 0 2 2 2 1 TrkA-N domain AdoHcyase_NAD PF00670.21 EME71295.1 - 0.013 15.6 4.6 0.097 12.7 0.5 2.4 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain K_oxygenase PF13434.6 EME71295.1 - 0.013 14.7 0.1 1.1 8.4 0.0 2.4 3 0 0 3 3 3 0 L-lysine 6-monooxygenase (NADPH-requiring) FMO-like PF00743.19 EME71295.1 - 0.014 13.9 0.1 0.3 9.5 0.0 2.0 2 0 0 2 2 2 0 Flavin-binding monooxygenase-like NAD_binding_9 PF13454.6 EME71295.1 - 0.031 14.3 2.7 0.087 12.8 0.3 2.8 3 0 0 3 3 3 0 FAD-NAD(P)-binding F420_oxidored PF03807.17 EME71295.1 - 0.15 12.7 1.2 2.6 8.7 0.4 2.7 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Fer4_9 PF13187.6 EME71295.1 - 0.5 10.6 4.7 0.59 10.4 0.9 1.9 1 1 1 2 2 2 0 4Fe-4S dicluster domain Trp_halogenase PF04820.14 EME71295.1 - 0.75 8.6 6.6 0.1 11.4 1.5 2.0 2 0 0 2 2 2 0 Tryptophan halogenase sCache_2 PF17200.4 EME71296.1 - 3.1e-42 144.1 0.0 8.3e-42 142.7 0.0 1.7 1 0 0 1 1 1 1 Single Cache domain 2 dCache_2 PF08269.11 EME71296.1 - 7.1e-41 140.3 0.0 1.8e-40 139.0 0.0 1.6 1 0 0 1 1 1 1 Cache domain MCPsignal PF00015.21 EME71296.1 - 1.3e-31 109.7 24.4 1.3e-31 109.7 24.4 2.8 2 1 1 3 3 3 1 Methyl-accepting chemotaxis protein (MCP) signalling domain Cache_3-Cache_2 PF17201.4 EME71296.1 - 7.6e-09 35.3 0.0 7.6e-09 35.3 0.0 2.3 3 0 0 3 3 3 1 Cache 3/Cache 2 fusion domain HAMP PF00672.25 EME71296.1 - 3.5e-05 24.1 4.1 0.00011 22.5 0.1 3.8 4 0 0 4 4 4 1 HAMP domain DUF948 PF06103.11 EME71296.1 - 0.00019 21.6 18.1 2.3 8.5 0.2 4.9 2 1 3 5 5 5 4 Bacterial protein of unknown function (DUF948) DUF1664 PF07889.12 EME71296.1 - 0.0012 18.9 7.1 0.17 11.9 0.6 3.2 2 2 0 2 2 2 2 Protein of unknown function (DUF1664) PIN_8 PF18476.1 EME71296.1 - 0.0034 17.3 3.0 0.32 10.8 0.4 2.4 1 1 1 2 2 2 2 PIN like domain Mur_ligase_C PF02875.21 EME71296.1 - 0.038 14.2 0.1 0.15 12.4 0.1 2.0 1 0 0 1 1 1 0 Mur ligase family, glutamate ligase domain DUF2574 PF10836.8 EME71296.1 - 0.16 11.8 2.6 1.9 8.4 0.9 2.8 1 1 1 2 2 2 0 Protein of unknown function (DUF2574) DUF3450 PF11932.8 EME71296.1 - 1.6 8.0 12.1 4.1 6.7 2.9 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) Laminin_II PF06009.12 EME71296.1 - 8.7 6.4 14.5 4.3 7.4 2.7 3.5 1 1 3 4 4 4 0 Laminin Domain II NnrS PF05940.12 EME71297.1 - 5.3e-106 355.1 67.7 5.9e-106 354.9 67.7 1.0 1 0 0 1 1 1 1 NnrS protein SAM_adeno_trans PF01887.16 EME71298.1 - 1.2e-62 211.4 0.0 1.4e-62 211.2 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase Lactamase_B_2 PF12706.7 EME71299.1 - 1.2e-28 100.0 0.1 1.6e-28 99.6 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 EME71299.1 - 3.3e-05 24.0 3.2 7.3e-05 22.9 3.2 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Radical_SAM PF04055.21 EME71300.1 - 2.7e-15 57.1 0.0 4.7e-15 56.4 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily TPR_19 PF14559.6 EME71300.1 - 1.6e-11 44.5 8.7 1.5e-07 31.8 0.4 3.2 1 1 2 3 3 3 3 Tetratricopeptide repeat SPASM PF13186.6 EME71300.1 - 4.6e-08 33.5 0.3 9.9e-08 32.4 0.3 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain TPR_16 PF13432.6 EME71300.1 - 3.2e-07 30.9 19.5 1.8e-05 25.3 8.1 3.1 2 1 0 2 2 2 2 Tetratricopeptide repeat TPR_12 PF13424.6 EME71300.1 - 7.6e-06 26.1 6.7 1.1e-05 25.6 0.8 2.9 2 1 0 2 2 2 1 Tetratricopeptide repeat Fer4_14 PF13394.6 EME71300.1 - 0.0003 20.9 0.0 0.00053 20.1 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain TPR_14 PF13428.6 EME71300.1 - 0.0016 19.1 21.6 0.037 14.8 0.8 5.0 2 1 3 5 5 4 2 Tetratricopeptide repeat TPR_4 PF07721.14 EME71300.1 - 0.0034 17.8 23.6 0.022 15.3 0.7 5.3 4 1 0 4 4 3 2 Tetratricopeptide repeat TPR_2 PF07719.17 EME71300.1 - 0.0036 17.3 6.6 3.9 7.8 0.2 4.6 4 0 0 4 4 4 1 Tetratricopeptide repeat ANAPC3 PF12895.7 EME71300.1 - 0.01 16.0 0.0 0.15 12.3 0.0 2.4 1 1 1 2 2 2 0 Anaphase-promoting complex, cyclosome, subunit 3 Fer4_12 PF13353.6 EME71300.1 - 0.026 14.8 0.0 0.044 14.0 0.0 1.3 1 0 0 1 1 1 0 4Fe-4S single cluster domain DUF3209 PF11483.8 EME71300.1 - 0.068 13.6 0.1 0.18 12.3 0.1 1.7 2 0 0 2 2 1 0 Protein of unknown function (DUF3209) Hydrolase PF00702.26 EME71300.1 - 0.086 13.1 0.0 0.11 12.7 0.0 1.4 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase TPR_10 PF13374.6 EME71300.1 - 0.098 12.6 10.3 0.27 11.1 0.0 4.2 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_20 PF14561.6 EME71300.1 - 0.26 11.7 2.7 3.2 8.1 0.1 2.9 1 1 3 4 4 4 0 Tetratricopeptide repeat TPR_11 PF13414.6 EME71300.1 - 0.38 10.5 1.8 1 9.1 0.2 2.4 2 0 0 2 2 2 0 TPR repeat HATPase_c PF02518.26 EME71301.1 - 8.5e-31 106.8 0.0 2.4e-30 105.3 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 EME71301.1 - 2.2e-27 95.4 0.0 4.8e-24 84.7 0.0 3.2 3 1 0 3 3 3 2 Response regulator receiver domain HisKA PF00512.25 EME71301.1 - 1.4e-20 73.1 9.2 9.8e-20 70.4 0.2 4.4 4 0 0 4 4 4 1 His Kinase A (phospho-acceptor) domain HAMP PF00672.25 EME71301.1 - 2.2e-09 37.5 0.8 1.8e-08 34.6 0.1 3.2 2 0 0 2 2 2 1 HAMP domain Hpt PF01627.23 EME71301.1 - 1.1e-06 28.9 4.7 1.1e-06 28.9 4.7 3.5 3 0 0 3 3 3 1 Hpt domain PAS_9 PF13426.7 EME71301.1 - 3.7e-05 23.9 0.0 0.00013 22.2 0.0 2.0 2 0 0 2 2 2 1 PAS domain PAS_8 PF13188.7 EME71301.1 - 0.00024 21.0 0.1 0.0012 18.8 0.0 2.3 2 0 0 2 2 2 1 PAS domain PAS_4 PF08448.10 EME71301.1 - 0.016 15.4 0.0 0.073 13.3 0.0 2.3 1 0 0 1 1 1 0 PAS fold 4HB_MCP_1 PF12729.7 EME71301.1 - 0.13 11.7 0.0 0.44 10.1 0.0 1.9 2 0 0 2 2 2 0 Four helix bundle sensory module for signal transduction Ribosomal_L36 PF00444.18 EME71302.1 - 6.8e-19 67.8 4.2 7.5e-19 67.7 4.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L36 FGase PF05013.12 EME71303.1 - 2.6e-25 89.9 0.0 3.3e-25 89.6 0.0 1.1 1 0 0 1 1 1 1 N-formylglutamate amidohydrolase DUF2312 PF10073.9 EME71304.1 - 2.6e-33 113.5 6.5 3e-33 113.3 6.5 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2312) Val_tRNA-synt_C PF10458.9 EME71304.1 - 0.0048 17.2 0.7 0.0061 16.8 0.7 1.1 1 0 0 1 1 1 1 Valyl tRNA synthetase tRNA binding arm CPSase_L_D3 PF02787.19 EME71304.1 - 0.045 14.1 0.4 0.054 13.9 0.4 1.1 1 0 0 1 1 1 0 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DUF4303 PF14136.6 EME71304.1 - 0.074 12.8 0.4 0.085 12.6 0.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4303) PhaP_Bmeg PF09602.10 EME71304.1 - 0.079 12.9 1.4 0.52 10.2 0.1 2.0 1 1 1 2 2 2 0 Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg) DUF455 PF04305.14 EME71305.1 - 1.1e-93 313.3 0.0 1.3e-93 313.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF455) Phenol_Hydrox PF02332.18 EME71305.1 - 0.045 13.3 0.0 0.16 11.5 0.0 1.8 2 0 0 2 2 2 0 Methane/Phenol/Toluene Hydroxylase AhpC-TSA PF00578.21 EME71306.1 - 1.6e-36 125.0 0.0 1.8e-36 124.8 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 EME71306.1 - 5.3e-18 65.1 0.0 6.2e-18 64.9 0.0 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.6 EME71306.1 - 4.1e-05 23.7 0.0 0.00014 21.9 0.0 1.6 1 1 1 2 2 2 1 AhpC/TSA antioxidant enzyme DUF899 PF05988.12 EME71306.1 - 0.00065 19.3 0.0 0.0008 19.0 0.0 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF899) GlnE PF03710.15 EME71307.1 - 1.2e-129 431.1 0.3 3.9e-66 223.0 0.3 3.0 3 0 0 3 3 3 2 Glutamate-ammonia ligase adenylyltransferase GlnD_UR_UTase PF08335.11 EME71307.1 - 1.1e-56 191.0 3.1 7.2e-43 146.2 0.4 2.5 2 0 0 2 2 2 2 GlnD PII-uridylyltransferase DUF294_C PF10335.9 EME71307.1 - 5.6e-07 29.4 0.4 0.024 14.4 0.0 2.8 2 0 0 2 2 2 2 Putative nucleotidyltransferase substrate binding domain DUF294 PF03445.13 EME71307.1 - 0.00031 20.5 0.0 0.0014 18.5 0.0 2.0 2 0 0 2 2 2 1 Putative nucleotidyltransferase DUF294 NTP_transf_2 PF01909.23 EME71307.1 - 0.019 15.2 0.0 9.6 6.6 0.1 2.4 2 0 0 2 2 2 0 Nucleotidyltransferase domain UBA PF00627.31 EME71307.1 - 0.08 12.9 0.1 0.44 10.5 0.0 2.3 2 0 0 2 2 2 0 UBA/TS-N domain AsmA_2 PF13502.6 EME71308.1 - 1.2e-19 70.7 3.1 4.6e-19 68.8 0.5 3.3 3 2 1 4 4 4 1 AsmA-like C-terminal region DUF3971 PF13116.6 EME71308.1 - 2e-12 47.3 0.0 6.1e-12 45.7 0.0 1.8 1 0 0 1 1 1 1 Protein of unknown function AsmA_1 PF13109.6 EME71308.1 - 7.8e-08 32.1 0.0 1.5e-07 31.2 0.0 1.3 1 0 0 1 1 1 1 AsmA-like C-terminal region AsmA PF05170.14 EME71308.1 - 0.006 15.4 0.0 0.017 14.0 0.0 1.7 2 0 0 2 2 2 1 AsmA family DUF1013 PF06242.11 EME71309.1 - 4.1e-64 214.8 0.1 6e-64 214.2 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1013) HTH_Tnp_ISL3 PF13542.6 EME71309.1 - 3.9e-05 23.0 0.0 0.12 11.8 0.0 2.6 3 0 0 3 3 3 2 Helix-turn-helix domain of transposase family ISL3 HTH_23 PF13384.6 EME71309.1 - 0.08 12.8 0.0 16 5.4 0.0 2.5 2 0 0 2 2 2 0 Homeodomain-like domain HTH_AsnC-type PF13404.6 EME71309.1 - 0.15 11.9 0.0 26 4.8 0.0 2.4 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain Crp PF00325.20 EME71309.1 - 0.17 11.6 0.0 1.6 8.5 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory proteins, crp family ADH_zinc_N PF00107.26 EME71310.1 - 2.7e-30 105.0 0.6 4.5e-30 104.3 0.6 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 EME71310.1 - 1.1e-27 97.6 0.1 2.4e-27 96.6 0.1 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 EME71310.1 - 8.5e-10 38.5 0.1 1.9e-07 30.9 0.0 3.0 2 1 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain AlaDh_PNT_C PF01262.21 EME71310.1 - 0.0015 17.9 0.6 0.0027 17.0 0.6 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain adh_short PF00106.25 EME71310.1 - 0.019 14.4 0.6 0.031 13.7 0.6 1.4 1 0 0 1 1 1 0 short chain dehydrogenase 2-Hacid_dh_C PF02826.19 EME71310.1 - 0.06 12.7 0.1 0.12 11.7 0.1 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DUF1192 PF06698.11 EME71311.1 - 8.9e-22 76.9 1.0 9.9e-22 76.8 1.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1192) Spc7 PF08317.11 EME71311.1 - 0.021 13.7 0.0 0.022 13.7 0.0 1.0 1 0 0 1 1 1 0 Spc7 kinetochore protein Hormone_3 PF00159.18 EME71311.1 - 0.044 13.9 0.0 0.069 13.2 0.0 1.3 1 0 0 1 1 1 0 Pancreatic hormone peptide Halo_GVPC PF05465.13 EME71311.1 - 0.11 12.8 1.5 0.43 10.9 1.0 2.0 1 1 1 2 2 2 0 Halobacterial gas vesicle protein C (GVPC) repeat adh_short_C2 PF13561.6 EME71312.1 - 7e-55 186.1 1.8 1.8e-54 184.8 1.8 1.5 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 EME71312.1 - 1.9e-52 177.6 0.3 2.4e-52 177.3 0.3 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 EME71312.1 - 5.6e-09 36.2 2.1 8.3e-09 35.6 0.7 1.8 2 0 0 2 2 2 1 KR domain 4HBT PF03061.22 EME71313.1 - 1.4e-09 38.2 0.2 3.1e-09 37.0 0.0 1.7 2 0 0 2 2 2 1 Thioesterase superfamily 4HBT_2 PF13279.6 EME71313.1 - 1.6e-08 35.0 0.0 2.2e-08 34.6 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily Acyl-ACP_TE PF01643.17 EME71313.1 - 4e-06 26.3 0.0 0.0001 21.7 0.1 2.0 2 0 0 2 2 2 2 Acyl-ACP thioesterase Hexapep PF00132.24 EME71314.1 - 1e-13 50.4 7.0 1.5e-05 24.5 0.1 3.7 3 1 0 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 EME71314.1 - 0.00012 21.8 11.6 0.019 14.7 4.8 3.5 2 2 2 4 4 4 3 Hexapeptide repeat of succinyl-transferase Fucokinase PF07959.12 EME71314.1 - 0.034 13.1 0.0 0.35 9.7 0.0 2.0 1 1 1 2 2 2 0 L-fucokinase Ni_hydr_CYTB PF01292.20 EME71315.1 - 3.1e-19 69.3 18.9 3.1e-19 69.3 18.9 1.9 2 0 0 2 2 2 1 Prokaryotic cytochrome b561 Fer4_7 PF12838.7 EME71317.1 - 2.2e-13 50.6 19.0 5.5e-08 33.3 0.3 2.8 2 2 0 2 2 2 2 4Fe-4S dicluster domain Fer4_11 PF13247.6 EME71317.1 - 4.1e-13 49.3 16.2 2.2e-10 40.5 6.0 3.1 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 EME71317.1 - 1.7e-09 37.7 25.1 2.1e-06 27.8 2.1 3.1 2 2 1 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 EME71317.1 - 9.9e-09 35.2 30.9 1.5e-06 28.2 5.0 3.4 2 2 1 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.27 EME71317.1 - 4.7e-08 32.5 1.4 4.7e-08 32.5 1.4 5.5 6 0 0 6 6 6 2 4Fe-4S binding domain Fer4_6 PF12837.7 EME71317.1 - 2.5e-07 30.5 11.1 7.3e-07 29.0 1.2 4.1 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_2 PF12797.7 EME71317.1 - 1.1e-06 28.4 29.7 0.00014 21.8 0.7 3.9 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_3 PF12798.7 EME71317.1 - 2.2e-05 25.1 40.6 0.0051 17.7 3.8 4.6 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_21 PF14697.6 EME71317.1 - 8.9e-05 22.5 28.6 0.03 14.5 3.1 3.4 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_4 PF12800.7 EME71317.1 - 0.0044 17.4 30.5 0.0074 16.7 2.1 3.9 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_8 PF13183.6 EME71317.1 - 0.015 15.7 27.1 0.086 13.3 4.8 3.9 2 2 1 3 3 3 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 EME71317.1 - 0.39 11.3 29.6 0.2 12.2 1.7 4.3 3 1 2 5 5 5 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 EME71317.1 - 0.59 10.9 0.3 0.59 10.9 0.3 4.1 3 2 0 3 3 3 0 4Fe-4S single cluster domain Fer4_16 PF13484.6 EME71317.1 - 0.93 10.5 28.8 2.3 9.2 7.3 4.3 3 1 1 4 4 4 0 4Fe-4S double cluster binding domain Molybdopterin PF00384.22 EME71318.1 - 8.3e-60 203.0 0.2 1.1e-59 202.6 0.2 1.2 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 EME71318.1 - 1e-18 67.4 0.0 2.4e-18 66.2 0.0 1.7 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 EME71318.1 - 4.4e-11 42.6 1.1 1.2e-10 41.2 0.7 2.0 2 0 0 2 2 2 1 Molybdopterin oxidoreductase Fe4S4 domain Nitrate_red_del PF02613.15 EME71320.1 - 6.1e-28 97.5 0.0 8.4e-28 97.1 0.0 1.1 1 0 0 1 1 1 1 Nitrate reductase delta subunit DUF3306 PF11748.8 EME71321.1 - 6.6e-20 72.2 5.1 7.1e-19 68.9 0.9 2.8 2 1 0 2 2 2 1 Protein of unknown function (DUF3306) DUF3305 PF11749.8 EME71322.1 - 2.2e-37 128.3 0.0 3.7e-37 127.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3305) NTP_transf_3 PF12804.7 EME71322.1 - 4.2e-34 118.2 1.7 8.1e-34 117.3 1.7 1.4 1 0 0 1 1 1 1 MobA-like NTP transferase domain FdhD-NarQ PF02634.15 EME71323.1 - 1.6e-69 234.2 0.0 1.9e-69 234.0 0.0 1.0 1 0 0 1 1 1 1 FdhD/NarQ family GbpA_2 PF18416.1 EME71323.1 - 0.025 14.9 0.0 1.5 9.2 0.0 2.3 2 0 0 2 2 2 0 N-acetylglucosamine binding protein domain 2 Fer4 PF00037.27 EME71324.1 - 7.6e-14 50.9 31.4 1.7e-06 27.6 2.5 5.6 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_7 PF12838.7 EME71324.1 - 3.2e-12 46.8 25.9 0.00044 20.8 0.4 4.5 3 2 2 5 5 5 5 4Fe-4S dicluster domain Fer4_16 PF13484.6 EME71324.1 - 2.8e-11 44.2 25.5 0.0099 16.8 0.2 4.7 4 1 0 4 4 4 4 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 EME71324.1 - 1.4e-08 34.7 26.8 6.8e-06 26.1 10.3 3.6 3 1 1 4 4 4 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 EME71324.1 - 8e-08 32.3 28.5 0.0029 17.7 13.1 4.0 2 2 2 4 4 4 4 4Fe-4S dicluster domain Fer4_21 PF14697.6 EME71324.1 - 3.8e-07 30.1 25.9 0.00064 19.8 11.4 3.7 2 1 2 4 4 4 4 4Fe-4S dicluster domain Fer4_6 PF12837.7 EME71324.1 - 8.3e-07 28.8 45.7 1.7e-06 27.9 3.2 5.3 6 0 0 6 6 5 4 4Fe-4S binding domain Fer4_2 PF12797.7 EME71324.1 - 1.5e-06 27.9 41.1 0.00017 21.4 3.4 5.8 6 0 0 6 6 5 3 4Fe-4S binding domain Fer4_8 PF13183.6 EME71324.1 - 3.2e-06 27.5 22.4 0.0089 16.5 1.6 4.7 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 EME71324.1 - 0.021 15.3 3.2 0.021 15.3 3.2 5.7 6 0 0 6 6 5 0 4Fe-4S binding domain FlpD PF02662.16 EME71324.1 - 0.027 14.5 0.0 0.072 13.1 0.0 1.7 1 0 0 1 1 1 0 Methyl-viologen-reducing hydrogenase, delta subunit DUF4630 PF15443.6 EME71324.1 - 0.033 14.4 6.9 0.041 14.1 2.4 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4630) Fer4_13 PF13370.6 EME71324.1 - 0.6 10.7 26.6 0.7 10.5 4.2 4.7 4 0 0 4 4 4 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_17 PF13534.6 EME71324.1 - 1 9.9 31.6 2.2 8.9 1.5 5.5 4 2 0 4 4 4 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 EME71324.1 - 3.5 8.8 53.3 0.28 12.2 6.7 5.5 6 0 0 6 6 5 0 4Fe-4S binding domain FGE-sulfatase PF03781.16 EME71325.1 - 8.3e-48 163.2 7.2 1.3e-47 162.5 7.2 1.3 1 1 0 1 1 1 1 Sulfatase-modifying factor enzyme 1 NiFe-hyd_HybE PF11939.8 EME71326.1 - 3.8e-39 134.0 0.0 4.5e-39 133.8 0.0 1.0 1 0 0 1 1 1 1 [NiFe]-hydrogenase assembly, chaperone, HybE FBPase PF00316.20 EME71327.1 - 1.9e-65 219.9 0.2 2.5e-65 219.5 0.2 1.1 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase, N-terminal domain MCPsignal PF00015.21 EME71328.1 - 2.9e-33 115.1 46.8 6.1e-33 114.1 25.1 3.2 1 1 1 2 2 2 1 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 EME71328.1 - 4.1e-09 36.7 0.3 4.1e-09 36.7 0.3 4.4 5 1 0 5 5 5 1 HAMP domain DUF948 PF06103.11 EME71328.1 - 8.6e-07 29.1 24.4 0.002 18.3 0.6 5.8 2 2 2 4 4 4 4 Bacterial protein of unknown function (DUF948) 4HB_MCP_1 PF12729.7 EME71328.1 - 0.0015 18.1 0.2 0.0015 18.1 0.2 4.1 3 2 1 4 4 4 1 Four helix bundle sensory module for signal transduction DUF1427 PF07235.11 EME71328.1 - 0.073 13.0 0.5 0.25 11.3 0.5 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF1427) DUF1664 PF07889.12 EME71328.1 - 0.14 12.2 19.4 1.6 8.8 2.8 4.5 3 2 1 4 4 4 0 Protein of unknown function (DUF1664) Plk4_PB2 PF18409.1 EME71328.1 - 0.39 11.4 4.9 1.1 10.0 0.6 3.0 2 2 1 3 3 3 0 Polo-like Kinase 4 Polo Box 2 COG6 PF06419.11 EME71328.1 - 0.77 7.9 9.8 1.9 6.6 0.5 2.4 2 0 0 2 2 2 0 Conserved oligomeric complex COG6 GCN5L1 PF06320.13 EME71328.1 - 0.97 9.6 12.7 0.28 11.3 5.4 3.1 2 1 0 2 2 2 0 GCN5-like protein 1 (GCN5L1) V_ATPase_I PF01496.19 EME71328.1 - 1.2 6.9 8.8 3 5.7 8.8 1.6 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Red1 PF07964.11 EME71328.1 - 1.9 6.6 4.6 3.6 5.7 4.6 1.3 1 0 0 1 1 1 0 Rec10 / Red1 LXG PF04740.12 EME71328.1 - 2.1 8.0 13.1 7.3 6.3 1.9 3.1 1 1 0 2 2 2 0 LXG domain of WXG superfamily Laminin_I PF06008.14 EME71328.1 - 2.2 7.9 27.1 0.76 9.4 4.3 3.9 2 1 1 4 4 4 0 Laminin Domain I SKA1 PF07160.12 EME71328.1 - 2.5 7.9 10.9 5.8 6.7 0.2 3.1 4 1 0 4 4 4 0 Spindle and kinetochore-associated protein 1 Laminin_II PF06009.12 EME71328.1 - 2.8 8.0 20.6 1.3 9.1 2.5 4.1 1 1 4 5 5 5 0 Laminin Domain II YlbD_coat PF14071.6 EME71328.1 - 4.3 7.6 6.1 2.7 8.3 0.8 2.7 3 0 0 3 3 3 0 Putative coat protein LOH1CR12 PF10158.9 EME71328.1 - 4.4 7.3 7.8 10 6.2 0.4 3.3 1 1 2 3 3 3 0 Tumour suppressor protein SpoIIE PF07228.12 EME71329.1 - 2.5e-33 115.7 0.1 3.6e-33 115.1 0.1 1.2 1 0 0 1 1 1 1 Stage II sporulation protein E (SpoIIE) Response_reg PF00072.24 EME71329.1 - 8.6e-26 90.3 0.0 1.7e-25 89.3 0.0 1.5 1 0 0 1 1 1 1 Response regulator receiver domain Pox_A31 PF05771.11 EME71329.1 - 0.12 12.3 0.0 2.1 8.4 0.0 2.1 2 0 0 2 2 2 0 Poxvirus A31 protein HATPase_c_2 PF13581.6 EME71330.1 - 6.6e-14 51.9 0.0 2e-13 50.4 0.0 1.7 1 1 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c PF02518.26 EME71330.1 - 0.038 14.5 0.0 0.076 13.5 0.0 1.5 1 1 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase STAS PF01740.21 EME71331.1 - 2.9e-10 39.8 0.0 3.1e-10 39.7 0.0 1.0 1 0 0 1 1 1 1 STAS domain STAS_2 PF13466.6 EME71331.1 - 8.5e-06 26.0 0.0 1.1e-05 25.7 0.0 1.1 1 0 0 1 1 1 1 STAS domain sCache_2 PF17200.4 EME71332.1 - 2.1e-41 141.4 0.0 2.1e-41 141.4 0.0 2.4 3 0 0 3 3 3 1 Single Cache domain 2 dCache_2 PF08269.11 EME71332.1 - 6.8e-35 120.7 2.4 1.1e-34 120.0 0.0 2.4 3 1 0 3 3 3 1 Cache domain MCPsignal PF00015.21 EME71332.1 - 1.4e-32 112.9 44.9 4.7e-32 111.2 27.9 2.4 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain Cache_3-Cache_2 PF17201.4 EME71332.1 - 2.4e-11 43.5 5.5 5.5e-11 42.3 0.0 3.2 2 1 2 4 4 4 1 Cache 3/Cache 2 fusion domain HAMP PF00672.25 EME71332.1 - 2.3e-08 34.3 0.2 2.3e-08 34.3 0.2 4.6 5 2 0 5 5 3 1 HAMP domain Sec5 PF15469.6 EME71332.1 - 0.045 13.6 1.2 0.97 9.2 0.2 2.5 2 1 0 2 2 2 0 Exocyst complex component Sec5 ATG16 PF08614.11 EME71332.1 - 0.12 12.6 14.7 1.3 9.2 1.5 2.4 2 0 0 2 2 2 0 Autophagy protein 16 (ATG16) dCache_1 PF02743.18 EME71332.1 - 0.18 11.6 0.0 0.18 11.6 0.0 3.3 3 1 0 3 3 3 0 Cache domain rRNA_processing PF08524.11 EME71332.1 - 0.22 11.5 0.4 0.51 10.4 0.4 1.5 1 0 0 1 1 1 0 rRNA processing BLOC1_2 PF10046.9 EME71332.1 - 0.28 11.5 8.5 1.1 9.6 0.7 3.7 3 1 0 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Spc7 PF08317.11 EME71332.1 - 0.31 9.9 9.5 0.72 8.7 1.4 2.2 2 0 0 2 2 2 0 Spc7 kinetochore protein LXG PF04740.12 EME71332.1 - 0.39 10.4 8.7 0.52 10.0 2.0 2.4 2 0 0 2 2 2 0 LXG domain of WXG superfamily DUF1664 PF07889.12 EME71332.1 - 0.57 10.2 12.8 4.4 7.4 5.4 3.5 2 1 0 2 2 2 0 Protein of unknown function (DUF1664) Fib_alpha PF08702.10 EME71332.1 - 1.1 9.4 7.0 5.1 7.3 0.6 3.1 2 1 1 3 3 3 0 Fibrinogen alpha/beta chain family DUF5082 PF16888.5 EME71332.1 - 2 8.7 5.7 1.1 9.6 0.3 2.9 2 2 0 2 2 2 0 Domain of unknown function (DUF5082) V_ATPase_I PF01496.19 EME71332.1 - 2.4 6.0 8.9 9.1 4.1 8.8 1.7 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family Dynactin_p22 PF07426.11 EME71332.1 - 2.6 7.9 6.4 1.9 8.3 0.4 3.3 3 1 1 4 4 4 0 Dynactin subunit p22 DUF4665 PF15679.5 EME71332.1 - 5.8 7.6 7.0 1.6 9.4 0.9 2.7 2 1 1 3 3 3 0 Domain of unknown function (DUF4665) Prominin PF05478.11 EME71332.1 - 6.3 4.6 6.2 8.1 4.3 0.6 2.1 2 0 0 2 2 2 0 Prominin DUF948 PF06103.11 EME71332.1 - 9.2 6.6 34.3 0.79 10.0 2.7 6.3 3 1 1 5 5 5 0 Bacterial protein of unknown function (DUF948) GST_N PF02798.20 EME71333.1 - 4.7e-15 55.7 0.0 9.7e-15 54.7 0.0 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.6 EME71333.1 - 5.6e-11 42.6 0.0 1.3e-10 41.4 0.0 1.6 2 0 0 2 2 2 1 Glutathione S-transferase, N-terminal domain GST_N_3 PF13417.6 EME71333.1 - 6.8e-11 42.4 0.0 1.2e-10 41.7 0.0 1.3 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_C PF00043.25 EME71333.1 - 1.7e-08 34.6 0.0 2.6e-08 34.0 0.0 1.3 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C_3 PF14497.6 EME71333.1 - 7e-07 29.4 0.0 1.1e-06 28.7 0.0 1.3 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C_2 PF13410.6 EME71333.1 - 4.5e-05 23.4 0.1 0.0001 22.3 0.1 1.6 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain Hemerythrin PF01814.23 EME71334.1 - 1.8e-07 31.9 2.3 2.3e-07 31.5 2.3 1.1 1 0 0 1 1 1 1 Hemerythrin HHE cation binding domain tRNA-synt_1d PF00750.19 EME71334.1 - 0.032 13.2 0.1 0.033 13.1 0.1 1.0 1 0 0 1 1 1 0 tRNA synthetases class I (R) LysR_substrate PF03466.20 EME71335.1 - 1.6e-40 138.7 5.4 1.6e-40 138.7 5.4 1.7 2 0 0 2 2 2 1 LysR substrate binding domain HTH_1 PF00126.27 EME71335.1 - 1e-19 70.2 1.0 1.8e-19 69.4 1.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_IclR PF09339.10 EME71335.1 - 0.021 14.6 1.4 0.19 11.6 0.1 2.7 3 0 0 3 3 3 0 IclR helix-turn-helix domain HTH_11 PF08279.12 EME71335.1 - 0.032 14.2 0.0 0.64 10.0 0.0 2.5 3 0 0 3 3 3 0 HTH domain ECH_1 PF00378.20 EME71336.1 - 4.8e-61 206.2 0.1 5.4e-61 206.1 0.1 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 EME71336.1 - 3.6e-48 164.8 0.5 1.4e-43 149.7 0.5 2.0 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase tRNA-synt_2e PF02091.15 EME71337.1 - 1.2e-150 500.4 0.0 1.3e-150 500.2 0.0 1.0 1 0 0 1 1 1 1 Glycyl-tRNA synthetase alpha subunit N-glycanase_C PF09113.10 EME71337.1 - 0.0022 17.8 0.1 0.0038 17.0 0.1 1.3 1 0 0 1 1 1 1 Peptide-N-glycosidase F, C terminal tRNA_synt_2f PF02092.17 EME71338.1 - 2.4e-204 680.2 0.0 2.9e-204 679.9 0.0 1.1 1 0 0 1 1 1 1 Glycyl-tRNA synthetase beta subunit DALR_1 PF05746.15 EME71338.1 - 3.1e-10 40.3 0.2 7e-10 39.1 0.2 1.6 1 0 0 1 1 1 1 DALR anticodon binding domain AAA_lid_3 PF17862.1 EME71338.1 - 4.3 7.2 8.3 0.3 10.9 2.1 2.3 2 0 0 2 2 2 0 AAA+ lid domain PEP-utilizers_C PF02896.18 EME71339.1 - 3e-95 318.7 0.0 5e-95 318.0 0.0 1.4 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PPDK_N PF01326.19 EME71339.1 - 4.1e-71 239.9 0.0 9.9e-68 228.8 0.0 3.1 1 1 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers PF00391.23 EME71339.1 - 6.9e-27 93.0 2.7 6.9e-27 93.0 2.7 2.0 2 0 0 2 2 2 1 PEP-utilising enzyme, mobile domain DUF5371 PF17341.2 EME71339.1 - 0.13 12.5 0.4 3.6 7.9 0.0 2.5 1 1 1 2 2 2 0 Family of unknown function (DUF5371) Response_reg PF00072.24 EME71340.1 - 2.4e-21 76.0 0.0 2.8e-21 75.8 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain PAS_9 PF13426.7 EME71341.1 - 2.4e-24 85.6 0.0 2.3e-15 56.7 0.0 3.0 3 0 0 3 3 3 2 PAS domain HATPase_c PF02518.26 EME71341.1 - 8.6e-24 84.2 0.0 1.8e-23 83.2 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 EME71341.1 - 9.1e-22 77.2 0.0 3.1e-13 49.7 0.0 3.0 2 1 0 2 2 2 2 PAS fold PAS_4 PF08448.10 EME71341.1 - 5.2e-21 75.0 0.9 2.8e-09 37.2 0.2 3.6 3 1 0 3 3 3 2 PAS fold dCache_1 PF02743.18 EME71341.1 - 4.9e-15 56.0 0.0 1.4e-13 51.2 0.0 2.2 2 0 0 2 2 2 1 Cache domain HisKA PF00512.25 EME71341.1 - 1.5e-11 44.2 1.6 4.6e-11 42.6 0.0 2.8 4 0 0 4 4 3 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.7 EME71341.1 - 1.2e-08 34.8 0.0 0.004 17.1 0.0 2.8 2 0 0 2 2 2 2 PAS domain HAMP PF00672.25 EME71341.1 - 7.4e-06 26.2 1.8 1.5e-05 25.3 0.6 2.3 2 0 0 2 2 2 1 HAMP domain Cache_3-Cache_2 PF17201.4 EME71341.1 - 8.9e-05 21.9 0.0 0.00015 21.1 0.0 1.3 1 0 0 1 1 1 1 Cache 3/Cache 2 fusion domain PAS_3 PF08447.12 EME71341.1 - 0.0001 22.5 0.1 2.2 8.6 0.0 3.6 3 0 0 3 3 3 2 PAS fold HATPase_c_5 PF14501.6 EME71341.1 - 0.0099 15.8 0.0 0.02 14.8 0.0 1.5 1 0 0 1 1 1 1 GHKL domain PAS_12 PF18095.1 EME71341.1 - 0.02 14.5 0.0 4 7.1 0.0 2.5 2 0 0 2 2 2 0 UPF0242 C-terminal PAS-like domain Response_reg PF00072.24 EME71342.1 - 5.9e-23 81.2 0.0 7.6e-23 80.8 0.0 1.2 1 0 0 1 1 1 1 Response regulator receiver domain DUF4440 PF14534.6 EME71342.1 - 0.0079 16.6 0.1 0.012 16.0 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4440) DUF3088 PF11287.8 EME71342.1 - 0.18 11.6 0.0 0.26 11.1 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3088) CbiD PF01888.17 EME71343.1 - 1.8e-85 286.3 0.1 1.8e-85 286.3 0.1 1.5 2 0 0 2 2 2 1 CbiD CbiJ PF02571.14 EME71344.1 - 2.6e-64 216.9 0.0 3e-64 216.7 0.0 1.0 1 0 0 1 1 1 1 Precorrin-6x reductase CbiJ/CobK TPP_enzyme_M PF00205.22 EME71344.1 - 0.16 11.7 0.0 0.37 10.5 0.0 1.7 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, central domain Response_reg PF00072.24 EME71345.1 - 1.1e-26 93.2 0.0 1.2e-26 93.0 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.26 EME71346.1 - 1.6e-26 93.0 0.0 3.1e-26 92.1 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 EME71346.1 - 9.2e-26 90.2 0.0 1.8e-25 89.3 0.0 1.5 1 0 0 1 1 1 1 Response regulator receiver domain HisKA PF00512.25 EME71346.1 - 1.7e-20 72.8 0.5 3.7e-19 68.5 0.2 2.6 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain Hpt PF01627.23 EME71346.1 - 0.0018 18.5 1.6 0.0023 18.1 0.1 2.0 2 0 0 2 2 2 1 Hpt domain HATPase_c_3 PF13589.6 EME71346.1 - 0.017 15.0 0.0 0.03 14.2 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Get5_C PF18514.1 EME71346.1 - 0.13 12.0 0.1 0.4 10.4 0.1 1.9 1 0 0 1 1 1 0 Get5 C-terminal domain AAA_13 PF13166.6 EME71346.1 - 0.19 10.3 0.1 0.27 9.9 0.1 1.1 1 0 0 1 1 1 0 AAA domain HSCB_C PF07743.13 EME71346.1 - 2.9 8.4 5.0 1.7 9.2 0.1 2.4 2 0 0 2 2 2 0 HSCB C-terminal oligomerisation domain Response_reg PF00072.24 EME71347.1 - 2.1e-23 82.6 0.1 2.3e-23 82.5 0.1 1.0 1 0 0 1 1 1 1 Response regulator receiver domain CheX PF13690.6 EME71348.1 - 1.6e-14 53.8 0.0 2.3e-14 53.3 0.0 1.2 1 0 0 1 1 1 1 Chemotaxis phosphatase CheX HATPase_c PF02518.26 EME71349.1 - 2.4e-24 86.0 0.0 3.8e-24 85.4 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 EME71349.1 - 5.1e-10 39.2 0.1 1.4e-09 37.8 0.0 1.8 1 1 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.6 EME71349.1 - 0.00019 21.4 0.2 0.00049 20.1 0.0 1.7 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 EME71349.1 - 0.0022 17.8 0.0 0.0045 16.8 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.6 EME71349.1 - 0.03 14.2 0.0 3.6 7.6 0.0 2.6 3 0 0 3 3 3 0 GHKL domain Response_reg PF00072.24 EME71350.1 - 4.3e-25 88.1 0.3 4.7e-25 87.9 0.3 1.0 1 0 0 1 1 1 1 Response regulator receiver domain Acyl-CoA_dh_1 PF00441.24 EME71351.1 - 8.5e-26 91.0 3.2 8.5e-26 91.0 3.2 2.5 2 2 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_C PF12806.7 EME71351.1 - 3e-25 88.8 9.0 9.5e-25 87.2 9.0 1.9 1 0 0 1 1 1 1 Acetyl-CoA dehydrogenase C-terminal like Acyl-CoA_dh_M PF02770.19 EME71351.1 - 1.7e-17 63.4 0.0 4.1e-17 62.2 0.0 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_N PF02771.16 EME71351.1 - 1.2e-13 51.7 0.3 5e-13 49.7 0.0 2.2 2 1 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain AcylCoA_DH_N PF12418.8 EME71351.1 - 1.1e-12 47.7 0.0 2.5e-12 46.6 0.0 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase N terminal Acyl-CoA_dh_2 PF08028.11 EME71351.1 - 5e-05 23.6 1.1 5e-05 23.6 1.1 2.3 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Phage_integrase PF00589.22 EME71353.1 - 3.7e-12 46.4 3.6 1.6e-10 41.0 0.1 2.8 2 1 1 3 3 3 2 Phage integrase family Phage_int_SAM_3 PF14659.6 EME71353.1 - 0.00068 19.8 0.0 0.0028 17.9 0.0 2.0 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Response_reg PF00072.24 EME71354.1 - 6.7e-13 48.8 0.3 8.9e-13 48.4 0.3 1.2 1 0 0 1 1 1 1 Response regulator receiver domain RET_CLD4 PF17813.1 EME71354.1 - 0.097 13.0 0.1 0.14 12.4 0.1 1.3 1 0 0 1 1 1 0 RET Cadherin like domain 4 Ribosomal_S4 PF00163.19 EME71355.1 - 2.2e-25 89.4 2.3 3.5e-25 88.7 2.3 1.3 1 0 0 1 1 1 1 Ribosomal protein S4/S9 N-terminal domain S4 PF01479.25 EME71355.1 - 2.9e-18 65.3 0.2 7.9e-18 63.9 0.0 1.8 2 0 0 2 2 2 1 S4 domain Ub-Mut7C PF14451.6 EME71355.1 - 0.016 15.0 0.0 0.03 14.2 0.0 1.4 1 0 0 1 1 1 0 Mut7-C ubiquitin Elong-fact-P_C PF09285.11 EME71355.1 - 0.022 14.5 0.0 0.046 13.5 0.0 1.4 1 0 0 1 1 1 0 Elongation factor P, C-terminal MCPsignal PF00015.21 EME71356.1 - 1.9e-32 112.4 39.2 9.9e-32 110.1 21.6 3.2 2 1 1 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain 4HB_MCP_1 PF12729.7 EME71356.1 - 7.5e-09 35.4 4.8 2.4e-08 33.8 0.0 3.4 3 1 1 4 4 4 1 Four helix bundle sensory module for signal transduction HAMP PF00672.25 EME71356.1 - 1e-07 32.2 0.2 1e-07 32.2 0.2 4.1 5 0 0 5 5 4 1 HAMP domain Dynactin_p22 PF07426.11 EME71356.1 - 0.0032 17.3 0.4 7 6.5 0.0 3.3 3 0 0 3 3 3 1 Dynactin subunit p22 DUF3450 PF11932.8 EME71356.1 - 0.014 14.7 10.6 0.039 13.3 0.9 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) DUF948 PF06103.11 EME71356.1 - 0.014 15.6 17.9 0.17 12.2 0.7 5.6 3 1 3 6 6 6 0 Bacterial protein of unknown function (DUF948) Laminin_I PF06008.14 EME71356.1 - 0.029 14.1 12.3 0.085 12.5 3.1 3.2 2 1 1 3 3 3 0 Laminin Domain I DUF1664 PF07889.12 EME71356.1 - 0.055 13.5 13.8 1.4 9.0 3.2 4.5 3 2 1 4 4 4 0 Protein of unknown function (DUF1664) CorA PF01544.18 EME71356.1 - 0.11 11.8 3.2 4.8 6.4 0.2 2.9 2 1 1 3 3 3 0 CorA-like Mg2+ transporter protein BLOC1_2 PF10046.9 EME71356.1 - 0.19 12.1 7.8 2.4 8.5 0.2 4.3 4 1 1 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Fibin PF15819.5 EME71356.1 - 0.33 10.7 5.8 0.12 12.1 2.6 1.9 2 0 0 2 2 2 0 Fin bud initiation factor homologue Nup88 PF10168.9 EME71356.1 - 0.46 8.2 3.4 0.25 9.1 0.9 1.8 2 0 0 2 2 2 0 Nuclear pore component DUF148 PF02520.17 EME71356.1 - 0.79 9.9 7.9 0.15 12.2 0.5 2.9 3 1 1 4 4 4 0 Domain of unknown function DUF148 Sec20 PF03908.13 EME71356.1 - 2.1 8.4 5.2 5.2 7.0 0.3 3.4 3 1 1 4 4 4 0 Sec20 Laminin_II PF06009.12 EME71356.1 - 2.9 7.9 15.9 0.88 9.6 1.8 4.0 3 2 2 5 5 5 0 Laminin Domain II Baculo_PEP_C PF04513.12 EME71356.1 - 3.3 7.7 9.9 1.8 8.6 0.5 3.3 3 2 0 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus Seryl_tRNA_N PF02403.22 EME71356.1 - 4 7.7 5.7 16 5.8 0.2 3.1 2 1 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain SpoU_methylase PF00588.19 EME71357.1 - 6.8e-27 94.4 0.0 9e-27 94.0 0.0 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family HMGL-like PF00682.19 EME71358.1 - 3.7e-43 148.0 0.0 8.8e-43 146.8 0.0 1.6 1 1 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.10 EME71358.1 - 4.4e-28 97.8 0.1 8.9e-28 96.8 0.1 1.5 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain DPBB_1 PF03330.18 EME71359.1 - 1.4e-22 79.7 0.0 1.6e-22 79.5 0.0 1.0 1 0 0 1 1 1 1 Lytic transglycolase PAS_8 PF13188.7 EME71359.1 - 0.16 12.0 0.0 0.31 11.1 0.0 1.6 1 1 0 1 1 1 0 PAS domain DPBB_1 PF03330.18 EME71360.1 - 7.4e-27 93.4 0.0 9e-27 93.2 0.0 1.1 1 0 0 1 1 1 1 Lytic transglycolase PepSY_2 PF13670.6 EME71361.1 - 3.6e-15 55.7 2.5 1e-06 28.7 0.1 2.0 1 1 1 2 2 2 2 Peptidase propeptide and YPEB domain PepSY PF03413.19 EME71361.1 - 2.7e-06 27.8 0.0 0.0032 18.0 0.1 2.3 2 0 0 2 2 2 2 Peptidase propeptide and YPEB domain CarboxypepD_reg PF13620.6 EME71361.1 - 0.0021 18.3 0.0 0.56 10.5 0.0 2.2 1 1 1 2 2 2 2 Carboxypeptidase regulatory-like domain Lactonase PF10282.9 EME71361.1 - 0.01 15.1 0.0 0.17 11.1 0.0 2.0 1 1 0 2 2 2 0 Lactonase, 7-bladed beta-propeller PQQ PF01011.21 EME71361.1 - 0.014 15.3 0.6 5.1 7.2 0.0 2.7 2 1 1 3 3 3 0 PQQ enzyme repeat DUF2716 PF10898.8 EME71361.1 - 0.13 12.7 0.1 0.21 12.0 0.1 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2716) CoA_transf_3 PF02515.17 EME71362.1 - 1.3e-120 403.0 0.0 1.4e-120 402.8 0.0 1.0 1 0 0 1 1 1 1 CoA-transferase family III MCPsignal PF00015.21 EME71363.1 - 2.4e-32 112.1 49.6 3.8e-31 108.2 27.5 3.8 2 1 1 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 EME71363.1 - 2.6e-09 37.3 0.0 2.6e-09 37.3 0.0 3.9 6 0 0 6 6 6 1 HAMP domain DUF948 PF06103.11 EME71363.1 - 0.0011 19.1 35.2 0.0012 19.1 1.9 6.2 3 3 3 6 6 6 2 Bacterial protein of unknown function (DUF948) DUF1664 PF07889.12 EME71363.1 - 0.012 15.6 18.5 0.27 11.3 1.4 5.4 4 3 2 6 6 6 0 Protein of unknown function (DUF1664) DUF3450 PF11932.8 EME71363.1 - 0.087 12.1 25.4 0.087 12.1 2.1 3.5 3 0 0 3 3 3 0 Protein of unknown function (DUF3450) Mur_ligase_C PF02875.21 EME71363.1 - 0.25 11.6 2.1 3.7 7.9 0.1 3.1 2 0 0 2 2 2 0 Mur ligase family, glutamate ligase domain HTH_Tnp_ISL3 PF13542.6 EME71363.1 - 0.42 10.1 6.1 0.13 11.7 1.1 2.9 2 1 1 3 3 3 0 Helix-turn-helix domain of transposase family ISL3 Sec34 PF04136.15 EME71363.1 - 0.9 9.4 6.1 33 4.3 0.2 4.1 3 3 1 4 4 4 0 Sec34-like family BORCS7 PF16088.5 EME71363.1 - 6.6 7.1 9.7 0.53 10.6 2.4 2.8 2 1 1 3 3 3 0 BLOC-1-related complex sub-unit 7 DUF218 PF02698.17 EME71364.1 - 3.3e-28 98.3 0.1 4e-28 98.0 0.1 1.0 1 0 0 1 1 1 1 DUF218 domain MarR_2 PF12802.7 EME71364.1 - 0.0082 16.0 0.2 0.018 14.9 0.2 1.7 1 0 0 1 1 1 1 MarR family Methyltransf_11 PF08241.12 EME71365.1 - 1.9e-21 76.5 0.1 3.2e-21 75.8 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 EME71365.1 - 2.8e-20 72.8 0.1 4.9e-20 72.0 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 EME71365.1 - 8.1e-17 61.5 0.0 1.1e-16 61.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 EME71365.1 - 9.4e-15 54.7 0.0 1.2e-14 54.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 EME71365.1 - 1.5e-12 48.1 0.0 2.4e-12 47.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 EME71365.1 - 1.5e-08 34.3 0.0 2.2e-08 33.7 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family CMAS PF02353.20 EME71365.1 - 2.4e-08 33.6 0.0 6.5e-08 32.2 0.0 1.6 2 0 0 2 2 2 1 Mycolic acid cyclopropane synthetase MetW PF07021.12 EME71365.1 - 4.3e-07 29.7 0.1 8.3e-07 28.8 0.0 1.5 2 0 0 2 2 2 1 Methionine biosynthesis protein MetW MTS PF05175.14 EME71365.1 - 1.5e-06 27.8 0.0 2.6e-06 27.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_8 PF05148.15 EME71365.1 - 3e-06 27.3 0.0 1.1e-05 25.4 0.0 1.8 1 1 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_32 PF13679.6 EME71365.1 - 0.00034 20.6 0.0 0.00057 19.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_9 PF08003.11 EME71365.1 - 0.00067 18.7 0.0 0.00087 18.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) PrmA PF06325.13 EME71365.1 - 0.002 17.6 0.0 0.003 17.0 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_4 PF02390.17 EME71365.1 - 0.006 16.1 0.1 1.6 8.2 0.0 2.6 3 0 0 3 3 3 1 Putative methyltransferase TPMT PF05724.11 EME71365.1 - 0.016 14.9 0.5 0.026 14.2 0.1 1.5 2 0 0 2 2 2 0 Thiopurine S-methyltransferase (TPMT) DREV PF05219.12 EME71365.1 - 0.028 13.5 0.0 0.042 12.9 0.0 1.2 1 0 0 1 1 1 0 DREV methyltransferase AdoMet_MTase PF07757.13 EME71365.1 - 0.045 14.1 0.0 0.078 13.3 0.0 1.4 1 0 0 1 1 1 0 Predicted AdoMet-dependent methyltransferase DUF938 PF06080.12 EME71365.1 - 0.091 12.5 0.0 0.49 10.1 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF938) PCMT PF01135.19 EME71365.1 - 0.19 11.5 0.1 0.33 10.7 0.1 1.5 1 1 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) N6_N4_Mtase PF01555.18 EME71365.1 - 0.24 11.1 0.0 15 5.2 0.0 2.2 2 0 0 2 2 2 0 DNA methylase Fer4 PF00037.27 EME71366.1 - 1.6e-08 34.0 19.1 2.9e-07 30.0 2.8 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.7 EME71366.1 - 6.8e-07 29.0 14.0 0.00092 19.2 4.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 EME71366.1 - 3.9e-06 27.4 14.4 8.7e-06 26.2 14.4 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 EME71366.1 - 6e-06 27.1 12.8 7.9e-05 23.5 4.8 2.2 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 EME71366.1 - 1.1e-05 25.5 28.7 0.0011 19.1 3.7 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 EME71366.1 - 9.9e-05 22.4 15.7 0.00067 19.7 14.5 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 EME71366.1 - 0.00086 19.6 2.6 0.00086 19.6 2.6 2.8 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_6 PF12837.7 EME71366.1 - 0.0009 19.2 19.7 0.003 17.6 4.9 2.4 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 EME71366.1 - 0.0028 17.8 4.2 0.0028 17.8 4.2 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 EME71366.1 - 0.018 15.5 1.9 0.018 15.5 1.9 2.4 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 EME71366.1 - 0.036 15.0 5.3 0.036 15.0 5.3 2.6 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_17 PF13534.6 EME71366.1 - 0.095 13.3 4.2 0.095 13.3 4.2 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain GF_recep_IV PF14843.6 EME71366.1 - 0.1 12.4 12.2 0.25 11.1 12.2 1.7 1 1 0 1 1 1 0 Growth factor receptor domain IV Fer4_18 PF13746.6 EME71366.1 - 0.38 11.0 14.1 3.5 7.9 14.2 1.9 1 1 1 2 2 2 0 4Fe-4S dicluster domain BcrAD_BadFG PF01869.20 EME71367.1 - 1.4e-57 195.2 4.0 1.6e-57 195.0 4.0 1.0 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family FtsA PF14450.6 EME71367.1 - 0.064 13.7 5.5 9.3 6.7 5.5 2.9 1 1 0 1 1 1 0 Cell division protein FtsA BcrAD_BadFG PF01869.20 EME71368.1 - 5.5e-119 396.6 0.5 6.2e-119 396.4 0.5 1.0 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family FGGY_N PF00370.21 EME71368.1 - 0.0079 15.8 0.2 0.016 14.8 0.0 1.6 2 0 0 2 2 2 1 FGGY family of carbohydrate kinases, N-terminal domain ROK PF00480.20 EME71368.1 - 0.075 12.5 0.0 0.19 11.2 0.0 1.6 2 0 0 2 2 2 0 ROK family FtsA PF14450.6 EME71368.1 - 0.099 13.1 0.4 0.35 11.3 0.0 2.2 2 1 0 2 2 2 0 Cell division protein FtsA HGD-D PF06050.13 EME71369.1 - 3.7e-48 164.9 0.0 4.6e-48 164.6 0.0 1.0 1 0 0 1 1 1 1 2-hydroxyglutaryl-CoA dehydratase, D-component HGD-D PF06050.13 EME71370.1 - 7.3e-46 157.4 0.0 8.2e-46 157.2 0.0 1.0 1 0 0 1 1 1 1 2-hydroxyglutaryl-CoA dehydratase, D-component ECH_1 PF00378.20 EME71371.1 - 4.2e-32 111.4 0.0 4.7e-32 111.3 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 EME71371.1 - 6.7e-19 68.6 0.0 8.5e-17 61.6 0.0 2.1 2 0 0 2 2 2 2 Enoyl-CoA hydratase/isomerase ECH_1 PF00378.20 EME71372.1 - 4.5e-35 121.2 0.0 7.7e-35 120.4 0.0 1.3 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 EME71372.1 - 1.1e-20 74.5 0.0 1.4e-20 74.1 0.0 1.3 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ADH_N PF08240.12 EME71373.1 - 1.1e-27 96.0 3.3 3e-27 94.7 3.3 1.7 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 EME71373.1 - 1.1e-19 70.7 0.1 1.9e-19 70.0 0.1 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.21 EME71373.1 - 3.9e-07 29.6 0.4 6e-07 29.0 0.4 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain TrkA_N PF02254.18 EME71373.1 - 0.0043 17.3 0.1 0.008 16.4 0.1 1.4 1 0 0 1 1 1 1 TrkA-N domain AdoHcyase_NAD PF00670.21 EME71373.1 - 0.0055 16.8 3.8 0.029 14.4 1.3 2.4 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 EME71373.1 - 0.0068 16.0 1.1 0.012 15.2 1.1 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain adh_short PF00106.25 EME71373.1 - 0.011 15.2 0.4 0.13 11.7 0.3 2.4 2 0 0 2 2 2 0 short chain dehydrogenase Methyltransf_25 PF13649.6 EME71373.1 - 0.015 15.9 0.2 0.052 14.2 0.2 2.0 1 1 0 1 1 1 0 Methyltransferase domain 2-Hacid_dh_C PF02826.19 EME71373.1 - 0.018 14.4 0.2 0.036 13.4 0.2 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 EME71373.1 - 0.027 14.3 0.4 0.046 13.6 0.4 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain MoCF_biosynth PF00994.24 EME71373.1 - 0.029 14.0 0.1 0.06 13.0 0.1 1.5 1 1 0 1 1 1 0 Probable molybdopterin binding domain Methyltransf_11 PF08241.12 EME71373.1 - 0.032 14.9 0.4 0.14 12.9 0.2 2.2 2 1 0 2 2 1 0 Methyltransferase domain ApbA PF02558.16 EME71373.1 - 0.039 13.6 0.1 0.077 12.6 0.1 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA DegT_DnrJ_EryC1 PF01041.17 EME71373.1 - 0.057 12.7 0.6 0.084 12.2 0.6 1.1 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family TPP_enzyme_M PF00205.22 EME71373.1 - 0.06 13.1 0.0 0.1 12.4 0.0 1.4 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, central domain IGFBP PF00219.18 EME71373.1 - 2.7 8.7 7.0 0.4 11.4 0.5 2.6 3 0 0 3 3 3 0 Insulin-like growth factor binding protein POR_N PF01855.19 EME71374.1 - 5.9e-53 180.0 0.1 9.4e-53 179.3 0.1 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.18 EME71374.1 - 1.2e-21 77.6 0.1 1.9e-21 76.9 0.1 1.3 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Transketolase_C PF02780.20 EME71374.1 - 4.2e-08 33.1 0.0 1e-07 31.9 0.0 1.6 1 0 0 1 1 1 1 Transketolase, C-terminal domain PFOR_II PF17147.4 EME71374.1 - 8.3e-08 32.5 0.0 1.7e-07 31.5 0.0 1.5 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II TPP_enzyme_N PF02776.18 EME71374.1 - 0.0067 16.0 0.4 0.017 14.8 0.4 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 EME71375.1 - 1e-28 100.1 0.1 1.5e-28 99.5 0.1 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.8 EME71375.1 - 0.12 12.6 0.0 0.22 11.7 0.0 1.5 1 0 0 1 1 1 0 Pyruvate ferredoxin oxidoreductase beta subunit C terminal Rubrerythrin PF02915.17 EME71376.1 - 3.1e-08 34.1 6.9 1.3e-07 32.1 6.9 1.8 1 1 0 1 1 1 1 Rubrerythrin Ferritin_2 PF13668.6 EME71376.1 - 0.0081 16.4 0.3 0.089 13.0 0.1 2.0 2 0 0 2 2 2 1 Ferritin-like domain Ferritin PF00210.24 EME71376.1 - 0.066 13.1 0.3 0.16 11.9 0.1 1.7 2 0 0 2 2 2 0 Ferritin-like domain TetR_C_31 PF17940.1 EME71376.1 - 0.24 11.6 5.1 0.64 10.3 0.4 2.2 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain DUF2525 PF10733.9 EME71376.1 - 2.7 8.3 5.8 1.7 9.0 1.0 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF2525) GTA_holin_3TM PF11351.8 EME71377.1 - 0.23 12.0 7.5 3.7 8.1 7.5 2.0 1 1 0 1 1 1 0 Holin of 3TMs, for gene-transfer release Phage_lysozyme PF00959.19 EME71378.1 - 0.004 17.6 0.0 0.0055 17.2 0.0 1.2 1 0 0 1 1 1 1 Phage lysozyme IDEAL PF08858.10 EME71379.1 - 0.13 12.0 0.3 0.13 12.0 0.3 1.5 2 0 0 2 2 2 0 IDEAL domain DUF1358 PF07096.11 EME71379.1 - 0.17 11.9 0.1 0.26 11.3 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1358) LPP20 PF02169.16 EME71380.1 - 0.67 10.3 2.2 0.84 10.0 1.8 1.5 1 1 0 1 1 1 0 LPP20 lipoprotein Phage-tail_3 PF13550.6 EME71382.1 - 0.0091 15.9 0.7 5.9 6.7 0.0 3.1 3 0 0 3 3 3 2 Putative phage tail protein YebG PF07130.12 EME71386.1 - 4.5 7.2 6.8 14 5.6 0.5 3.0 2 0 0 2 2 2 0 YebG protein Phage_TAC_6 PF09550.10 EME71387.1 - 2.2e-05 24.8 0.4 2.6e-05 24.6 0.4 1.2 1 0 0 1 1 1 1 Phage tail assembly chaperone protein, TAC Phage_TAC_11 PF11836.8 EME71388.1 - 1.1e-14 54.3 0.3 1.3e-14 54.1 0.3 1.0 1 0 0 1 1 1 1 Phage tail tube protein, GTA-gp10 Phage_tail_2 PF06199.11 EME71389.1 - 7.9e-11 42.2 1.7 8.5e-11 42.1 0.4 1.7 2 0 0 2 2 2 1 Phage tail tube protein Phage_tail_U PF06141.11 EME71390.1 - 0.00018 21.8 0.0 0.00024 21.5 0.0 1.1 1 0 0 1 1 1 1 Phage minor tail protein U DivIC PF04977.15 EME71392.1 - 0.0049 16.6 0.7 0.0078 16.0 0.7 1.2 1 0 0 1 1 1 1 Septum formation initiator Fez1 PF06818.15 EME71392.1 - 0.064 13.7 0.0 0.08 13.4 0.0 1.1 1 0 0 1 1 1 0 Fez1 TMF_DNA_bd PF12329.8 EME71392.1 - 0.074 13.1 0.5 0.11 12.5 0.5 1.2 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding VSG_B PF13206.6 EME71392.1 - 0.14 11.4 0.2 0.17 11.1 0.2 1.1 1 0 0 1 1 1 0 Trypanosomal VSG domain Mu-like_gpT PF10124.9 EME71393.1 - 3.2e-26 92.3 0.0 2.4e-23 82.9 0.0 2.2 2 0 0 2 2 2 2 Mu-like prophage major head subunit gpT Peptidase_S49 PF01343.18 EME71395.1 - 5e-26 91.5 0.5 8.6e-26 90.7 0.5 1.3 1 0 0 1 1 1 1 Peptidase family S49 CLP_protease PF00574.23 EME71395.1 - 0.0069 16.3 0.5 0.04 13.8 0.5 2.0 2 0 0 2 2 2 1 Clp protease Succ_CoA_lig PF13607.6 EME71395.1 - 0.07 12.9 0.1 0.07 12.9 0.1 3.1 3 1 0 3 3 3 0 Succinyl-CoA ligase like flavodoxin domain Phage_portal_2 PF05136.13 EME71396.1 - 5.9e-88 295.5 0.0 7.5e-88 295.1 0.0 1.1 1 0 0 1 1 1 1 Phage portal protein, lambda family NinD PF17466.2 EME71397.1 - 0.019 15.1 0.0 0.031 14.4 0.0 1.4 1 0 0 1 1 1 0 Family of unknown function Terminase_GpA PF05876.12 EME71398.1 - 2.3e-128 429.2 0.0 2.9e-128 428.9 0.0 1.0 1 0 0 1 1 1 1 Phage terminase large subunit (GpA) HscB_4_cys PF18256.1 EME71398.1 - 0.021 14.6 2.5 0.18 11.7 0.4 2.5 2 0 0 2 2 2 0 Co-chaperone HscB tetracysteine metal binding motif zinc_ribbon_4 PF13717.6 EME71398.1 - 0.66 10.0 3.3 2.2 8.3 0.0 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Phage_Nu1 PF07471.12 EME71399.1 - 4.1e-16 59.2 1.1 1.2e-15 57.7 1.1 1.6 1 1 0 1 1 1 1 Phage DNA packaging protein Nu1 DUF1441 PF07278.11 EME71399.1 - 1.1e-11 44.9 0.1 1.6e-11 44.3 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1441) HTH_17 PF12728.7 EME71399.1 - 0.0041 17.3 0.0 0.013 15.7 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_28 PF13518.6 EME71399.1 - 0.012 15.7 0.0 0.057 13.6 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain PMEI PF04043.15 EME71399.1 - 0.088 13.1 0.3 0.16 12.3 0.3 1.5 1 1 0 1 1 1 0 Plant invertase/pectin methylesterase inhibitor HTH_23 PF13384.6 EME71399.1 - 0.12 12.3 0.3 0.55 10.1 0.0 2.1 2 0 0 2 2 2 0 Homeodomain-like domain DUF883 PF05957.13 EME71399.1 - 0.12 13.0 3.1 0.17 12.5 1.7 1.9 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) HTH_Crp_2 PF13545.6 EME71402.1 - 0.0021 18.0 0.0 0.0035 17.3 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain SMN PF06003.12 EME71402.1 - 0.3 10.3 3.8 0.5 9.6 3.8 1.3 1 0 0 1 1 1 0 Survival motor neuron protein (SMN) DnaB_C PF03796.15 EME71403.1 - 6.3e-78 261.6 0.0 8.5e-78 261.2 0.0 1.2 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain DnaB PF00772.21 EME71403.1 - 1.4e-29 102.2 0.0 2.4e-29 101.4 0.0 1.4 1 0 0 1 1 1 1 DnaB-like helicase N terminal domain AAA_25 PF13481.6 EME71403.1 - 5e-17 62.1 0.3 1.1e-16 61.0 0.3 1.5 1 0 0 1 1 1 1 AAA domain TniB PF05621.11 EME71403.1 - 0.0062 16.0 0.1 0.064 12.7 0.2 2.2 2 0 0 2 2 2 1 Bacterial TniB protein AAA PF00004.29 EME71403.1 - 0.011 16.1 0.0 0.12 12.8 0.0 2.5 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 EME71403.1 - 0.075 13.3 0.0 0.16 12.2 0.0 1.6 1 1 0 1 1 1 0 AAA domain MTS PF05175.14 EME71404.1 - 0.019 14.5 0.1 0.23 11.0 0.0 2.0 2 0 0 2 2 2 0 Methyltransferase small domain DNA_methylase PF00145.17 EME71406.1 - 4.3e-23 82.2 0.0 6.9e-13 48.6 0.0 2.2 2 0 0 2 2 2 2 C-5 cytosine-specific DNA methylase DUF1707 PF08044.11 EME71408.1 - 0.075 13.1 1.1 0.075 13.1 1.1 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF1707) HEAT_2 PF13646.6 EME71409.1 - 0.0048 17.3 0.0 0.0064 16.8 0.0 1.2 1 0 0 1 1 1 1 HEAT repeats Peptidase_S24 PF00717.23 EME71410.1 - 3.4e-08 33.3 0.0 5.6e-08 32.6 0.0 1.4 1 0 0 1 1 1 1 Peptidase S24-like DUF1566 PF07603.11 EME71412.1 - 6.5e-11 42.6 0.1 7.9e-11 42.3 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1566) DUF2312 PF10073.9 EME71413.1 - 1.3e-28 98.4 0.8 1.5e-28 98.2 0.8 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2312) MAP70 PF07058.11 EME71413.1 - 0.046 12.5 0.1 0.058 12.1 0.1 1.1 1 0 0 1 1 1 0 Microtubule-associated protein 70 HD_2 PF12917.7 EME71414.1 - 0.00012 21.9 0.0 0.00018 21.3 0.0 1.4 1 0 0 1 1 1 1 HD containing hydrolase-like enzyme SSB PF00436.25 EME71415.1 - 9.5e-39 131.6 1.2 1.1e-38 131.4 1.2 1.1 1 0 0 1 1 1 1 Single-strand binding protein family DUF1566 PF07603.11 EME71417.1 - 2e-11 44.3 0.0 2.6e-11 43.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1566) 23S_rRNA_IVP PF05635.11 EME71418.1 - 2e-06 28.0 0.0 2.3e-06 27.8 0.0 1.1 1 0 0 1 1 1 1 23S rRNA-intervening sequence protein RVT_1 PF00078.27 EME71419.1 - 1.8e-18 66.9 0.0 2.7e-17 63.0 0.0 2.0 1 1 0 1 1 1 1 Reverse transcriptase (RNA-dependent DNA polymerase) Sel_put PF04328.13 EME71419.1 - 0.072 13.1 0.1 0.17 11.9 0.1 1.6 1 0 0 1 1 1 0 Selenoprotein, putative ASCH PF04266.14 EME71420.1 - 0.00036 21.1 0.0 0.00049 20.6 0.0 1.3 1 0 0 1 1 1 1 ASCH domain DUF5131 PF07505.11 EME71421.1 - 8.6e-102 339.8 0.0 1e-101 339.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF5131) NOB1_Zn_bind PF08772.11 EME71421.1 - 0.12 12.5 0.6 0.29 11.3 0.6 1.5 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like PAPS_reduct PF01507.19 EME71422.1 - 1.1e-06 28.8 0.0 3e-06 27.4 0.0 1.7 1 1 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family HTH_17 PF12728.7 EME71425.1 - 0.0011 19.1 0.0 0.0019 18.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_8 PF02954.19 EME71425.1 - 0.0032 17.2 0.3 0.0084 15.9 0.2 1.7 2 0 0 2 2 2 1 Bacterial regulatory protein, Fis family Tn916-Xis PF09035.10 EME71425.1 - 0.13 12.5 0.0 0.17 12.1 0.0 1.2 1 0 0 1 1 1 0 Excisionase from transposon Tn916 UPF0175 PF03683.13 EME71425.1 - 0.16 11.7 0.0 0.23 11.2 0.0 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0175) Phage_integrase PF00589.22 EME71426.1 - 1.7e-15 57.3 0.0 2.6e-15 56.6 0.0 1.2 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_3 PF14659.6 EME71426.1 - 0.00098 19.3 0.2 0.0016 18.7 0.2 1.4 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 EME71426.1 - 0.0045 17.3 0.0 0.0089 16.3 0.0 1.6 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 EME71426.1 - 0.0052 17.2 0.0 0.0091 16.4 0.0 1.4 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 EME71426.1 - 0.018 15.4 0.0 0.032 14.6 0.0 1.3 1 0 0 1 1 1 0 Phage integrase SAM-like domain B1 PF02246.15 EME71426.1 - 0.12 12.4 0.1 0.26 11.3 0.1 1.7 1 0 0 1 1 1 0 Protein L b1 domain CPSase_L_D2 PF02786.17 EME71427.1 - 8.1e-82 273.8 0.0 1.1e-81 273.3 0.0 1.2 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Biotin_carb_N PF00289.22 EME71427.1 - 1e-46 158.0 0.4 2.2e-46 156.9 0.1 1.7 2 0 0 2 2 2 1 Biotin carboxylase, N-terminal domain Biotin_carb_C PF02785.19 EME71427.1 - 1.1e-39 134.8 0.0 2.3e-39 133.8 0.0 1.5 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain Dala_Dala_lig_C PF07478.13 EME71427.1 - 1.6e-08 34.4 0.0 3.1e-08 33.4 0.0 1.4 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp PF02222.22 EME71427.1 - 3e-08 33.4 0.0 5.6e-08 32.5 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.14 EME71427.1 - 0.0001 22.4 0.0 0.0014 18.7 0.0 2.2 1 1 0 1 1 1 1 ATP-grasp domain ATP-grasp_5 PF13549.6 EME71427.1 - 0.013 15.0 0.0 0.027 13.9 0.0 1.5 1 0 0 1 1 1 0 ATP-grasp domain GARS_A PF01071.19 EME71427.1 - 0.016 14.9 0.0 0.024 14.4 0.0 1.3 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATPgrasp_ST PF14397.6 EME71427.1 - 0.14 11.4 0.0 0.3 10.3 0.0 1.5 2 0 0 2 2 2 0 Sugar-transfer associated ATP-grasp Biotin_lipoyl PF00364.22 EME71428.1 - 1.7e-17 63.0 0.0 2.4e-17 62.5 0.0 1.2 1 0 0 1 1 1 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 EME71428.1 - 1.1e-05 25.2 0.0 0.00016 21.5 0.0 2.2 2 0 0 2 2 2 1 Biotin-lipoyl like HlyD_3 PF13437.6 EME71428.1 - 0.0076 16.9 0.0 0.37 11.5 0.0 2.3 2 0 0 2 2 2 1 HlyD family secretion protein DHquinase_II PF01220.19 EME71429.1 - 1.6e-59 199.5 0.3 1.8e-59 199.3 0.3 1.0 1 0 0 1 1 1 1 Dehydroquinase class II PBP_like_2 PF12849.7 EME71430.1 - 3.4e-11 43.3 0.0 8.3e-11 42.1 0.0 1.6 1 1 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.6 EME71430.1 - 5.7e-11 42.6 1.7 1.1e-10 41.6 1.7 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein LysR_substrate PF03466.20 EME71430.1 - 4.6e-05 22.9 0.3 8.3e-05 22.0 0.0 1.7 2 0 0 2 2 2 1 LysR substrate binding domain PBP_like PF12727.7 EME71430.1 - 0.078 12.1 0.0 0.13 11.4 0.0 1.4 1 0 0 1 1 1 0 PBP superfamily domain HisKA PF00512.25 EME71431.1 - 0.0046 17.0 2.4 0.014 15.4 0.0 2.6 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c PF02518.26 EME71431.1 - 0.043 14.3 0.0 0.071 13.6 0.0 1.3 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLP_protease PF00574.23 EME71431.1 - 0.05 13.5 0.1 3.6 7.4 0.2 2.2 2 0 0 2 2 2 0 Clp protease End3 PF12761.7 EME71431.1 - 0.12 12.5 0.0 0.18 12.0 0.0 1.1 1 0 0 1 1 1 0 Actin cytoskeleton-regulatory complex protein END3 ThiG PF05690.14 EME71432.1 - 1.5e-109 365.1 0.5 1.8e-109 364.8 0.5 1.1 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG ThiS PF02597.20 EME71432.1 - 7.8e-11 42.5 0.3 1.6e-10 41.5 0.3 1.5 1 0 0 1 1 1 1 ThiS family His_biosynth PF00977.21 EME71432.1 - 3.8e-05 23.3 0.3 0.002 17.7 0.0 2.1 2 0 0 2 2 2 1 Histidine biosynthesis protein FMN_dh PF01070.18 EME71432.1 - 0.0059 15.7 0.1 0.0083 15.2 0.1 1.3 1 0 0 1 1 1 1 FMN-dependent dehydrogenase SOR_SNZ PF01680.17 EME71432.1 - 0.0086 15.9 0.4 0.018 14.8 0.4 1.5 1 0 0 1 1 1 1 SOR/SNZ family Dus PF01207.17 EME71432.1 - 0.036 13.1 0.3 0.087 11.9 0.1 1.7 2 0 0 2 2 2 0 Dihydrouridine synthase (Dus) DUF4245 PF14030.6 EME71432.1 - 0.11 12.5 0.0 0.2 11.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4245) DUF561 PF04481.12 EME71432.1 - 0.16 11.1 0.1 0.27 10.4 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF561) Abhydrolase_1 PF00561.20 EME71433.1 - 1.1e-14 54.7 0.0 1.8e-08 34.3 0.0 2.8 3 0 0 3 3 3 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 EME71433.1 - 4.4e-14 53.6 7.8 5.5e-14 53.3 7.8 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Thioesterase PF00975.20 EME71433.1 - 1.7e-09 38.1 0.0 2.2e-09 37.8 0.0 1.1 1 0 0 1 1 1 1 Thioesterase domain Hydrolase_4 PF12146.8 EME71433.1 - 1.6e-08 34.1 0.1 3.6e-08 33.0 0.1 1.6 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_4 PF08386.10 EME71433.1 - 8.4e-06 25.8 0.0 1.3e-05 25.2 0.0 1.3 1 0 0 1 1 1 1 TAP-like protein Abhydrolase_5 PF12695.7 EME71433.1 - 0.0025 17.6 0.0 0.81 9.4 0.0 2.1 2 0 0 2 2 2 2 Alpha/beta hydrolase family Esterase PF00756.20 EME71433.1 - 0.0057 16.3 0.0 0.0081 15.8 0.0 1.3 1 0 0 1 1 1 1 Putative esterase LIDHydrolase PF10230.9 EME71433.1 - 0.011 15.4 0.0 0.028 14.0 0.0 1.8 1 1 0 1 1 1 0 Lipid-droplet associated hydrolase Abhydrolase_3 PF07859.13 EME71433.1 - 0.012 15.5 0.6 0.061 13.2 0.6 2.0 1 1 0 1 1 1 0 alpha/beta hydrolase fold FSH1 PF03959.13 EME71433.1 - 0.014 15.1 0.0 0.02 14.6 0.0 1.3 1 0 0 1 1 1 0 Serine hydrolase (FSH1) Peptidase_S9 PF00326.21 EME71433.1 - 0.16 11.4 0.0 5.3 6.4 0.0 2.1 2 0 0 2 2 2 0 Prolyl oligopeptidase family Ribonuclease_T2 PF00445.18 EME71434.1 - 2.9e-18 66.8 0.0 7.6e-18 65.4 0.0 1.6 1 1 0 1 1 1 1 Ribonuclease T2 family Radical_SAM PF04055.21 EME71436.1 - 2.8e-20 73.4 0.0 5.1e-20 72.5 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily HemN_C PF06969.16 EME71436.1 - 3.9e-16 58.8 0.1 7.4e-16 58.0 0.1 1.5 1 0 0 1 1 1 1 HemN C-terminal domain dCMP_cyt_deam_1 PF00383.23 EME71437.1 - 3.5e-24 84.6 0.0 4.3e-24 84.3 0.0 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region MafB19-deam PF14437.6 EME71437.1 - 2.6e-15 56.4 0.0 2.9e-15 56.2 0.0 1.0 1 0 0 1 1 1 1 MafB19-like deaminase APOBEC3 PF18771.1 EME71437.1 - 0.00073 19.7 0.0 0.00098 19.2 0.0 1.2 1 0 0 1 1 1 1 APOBEC3 APOBEC_N PF08210.11 EME71437.1 - 0.026 14.4 0.0 0.032 14.1 0.0 1.2 1 0 0 1 1 1 0 APOBEC-like N-terminal domain SNAD4 PF18750.1 EME71437.1 - 0.039 14.1 0.0 0.057 13.5 0.0 1.3 1 0 0 1 1 1 0 Secreted Novel AID/APOBEC-like Deaminase 4 NAD1 PF18778.1 EME71437.1 - 0.045 13.8 0.0 0.062 13.4 0.0 1.2 1 0 0 1 1 1 0 Novel AID APOBEC clade 1 APOBEC2 PF18772.1 EME71437.1 - 0.065 13.3 0.0 0.087 12.9 0.0 1.2 1 0 0 1 1 1 0 APOBEC2 SCP1201-deam PF14428.6 EME71437.1 - 0.11 12.4 0.0 0.13 12.1 0.0 1.2 1 0 0 1 1 1 0 SCP1.201-like deaminase Bd3614-deam PF14439.6 EME71437.1 - 0.18 11.9 2.7 0.38 10.8 0.7 2.2 2 1 1 3 3 3 0 Bd3614-like deaminase RuBisCO_large PF00016.20 EME71438.1 - 9.3e-119 396.0 0.1 1.2e-118 395.6 0.1 1.1 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, catalytic domain RuBisCO_large_N PF02788.16 EME71438.1 - 2.6e-39 134.1 0.0 4.1e-39 133.5 0.0 1.3 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, N-terminal domain PRK PF00485.18 EME71439.1 - 3.1e-74 249.0 0.0 3.7e-74 248.7 0.0 1.1 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family APS_kinase PF01583.20 EME71439.1 - 0.00088 19.2 0.0 0.0013 18.7 0.0 1.2 1 0 0 1 1 1 1 Adenylylsulphate kinase MeaB PF03308.16 EME71439.1 - 0.0017 17.4 0.0 0.003 16.6 0.0 1.3 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB Zeta_toxin PF06414.12 EME71439.1 - 0.039 13.2 0.1 0.35 10.1 0.0 2.1 2 0 0 2 2 2 0 Zeta toxin NUDIX PF00293.28 EME71440.1 - 3.7e-20 72.3 0.2 7.6e-20 71.3 0.2 1.5 1 0 0 1 1 1 1 NUDIX domain NUDIX-like PF09296.11 EME71440.1 - 5.3e-15 55.9 0.2 2.7e-14 53.7 0.3 2.0 2 0 0 2 2 2 1 NADH pyrophosphatase-like rudimentary NUDIX domain zf-NADH-PPase PF09297.11 EME71440.1 - 3e-07 30.0 2.6 4.8e-07 29.3 2.6 1.4 1 0 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain HTH_31 PF13560.6 EME71440.1 - 0.06 13.7 1.7 0.13 12.6 0.6 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain zf-C3H1 PF10650.9 EME71440.1 - 0.21 11.4 0.6 1.2 8.9 0.0 2.1 2 0 0 2 2 2 0 Putative zinc-finger domain EAL PF00563.20 EME71441.1 - 1.8e-70 237.1 0.0 2.5e-70 236.7 0.0 1.2 1 0 0 1 1 1 1 EAL domain GGDEF PF00990.21 EME71441.1 - 1.9e-41 141.5 0.0 3e-41 140.9 0.0 1.3 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain PAS_8 PF13188.7 EME71441.1 - 0.00052 20.0 0.1 0.0068 16.4 0.0 2.7 2 0 0 2 2 2 1 PAS domain PAS_4 PF08448.10 EME71441.1 - 0.0041 17.3 0.1 3.6 7.9 0.0 3.4 3 1 0 3 3 3 1 PAS fold PAS PF00989.25 EME71441.1 - 0.0048 16.9 0.0 0.11 12.5 0.0 2.5 1 1 0 1 1 1 1 PAS fold Fer4_7 PF12838.7 EME71442.1 - 3.8e-14 53.0 21.0 6.5e-07 29.8 7.8 2.5 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 EME71442.1 - 6.9e-13 48.5 18.8 1.1e-06 28.7 8.1 2.5 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 EME71442.1 - 1.1e-11 44.0 34.4 1.5e-07 31.0 4.2 4.2 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_6 PF12837.7 EME71442.1 - 4.8e-10 39.1 12.8 2.1e-06 27.6 2.7 4.2 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_10 PF13237.6 EME71442.1 - 1.4e-07 31.5 16.4 3.3e-05 23.9 7.7 3.2 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 EME71442.1 - 3.3e-07 30.0 34.1 3.9e-05 23.5 3.2 4.3 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_21 PF14697.6 EME71442.1 - 4.3e-06 26.8 27.5 0.00027 21.0 9.5 3.3 1 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 EME71442.1 - 6.3e-06 27.0 28.6 0.0019 19.1 1.6 4.1 3 1 1 4 4 4 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 EME71442.1 - 0.00025 21.3 13.0 0.001 19.4 3.9 4.1 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_17 PF13534.6 EME71442.1 - 0.00047 20.6 24.9 0.024 15.2 0.2 4.0 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 EME71442.1 - 0.0008 20.2 42.2 0.016 16.1 4.7 4.3 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_15 PF13459.6 EME71442.1 - 0.00089 19.9 19.7 1.5 9.6 1.2 3.7 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_8 PF13183.6 EME71442.1 - 0.005 17.3 28.8 0.021 15.3 1.5 3.9 2 1 2 4 4 4 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 EME71442.1 - 3.8 8.4 26.4 0.59 11.0 1.6 3.4 4 0 0 4 4 3 0 4Fe-4S dicluster domain NapD PF03927.13 EME71443.1 - 2.4e-26 91.6 0.1 2.9e-26 91.3 0.1 1.1 1 0 0 1 1 1 1 NapD protein Molybdopterin PF00384.22 EME71444.1 - 4.4e-92 309.3 0.1 5.5e-92 309.0 0.1 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 EME71444.1 - 5.6e-26 90.7 0.0 1.6e-25 89.3 0.0 1.8 2 0 0 2 2 2 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 EME71444.1 - 4.9e-18 64.9 1.1 1.1e-17 63.8 0.4 2.0 2 0 0 2 2 2 1 Molybdopterin oxidoreductase Fe4S4 domain TAT_signal PF10518.9 EME71444.1 - 0.00091 19.0 3.7 0.0021 17.8 3.7 1.6 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.9 EME71444.1 - 0.1 12.0 3.0 0.21 10.9 3.0 1.5 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Fer4_7 PF12838.7 EME71445.1 - 1.2e-12 48.2 23.1 8.9e-07 29.4 7.3 2.8 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 EME71445.1 - 2.5e-11 43.2 31.8 9.1e-05 22.4 2.1 4.4 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4 PF00037.27 EME71445.1 - 3.7e-09 36.0 34.8 0.0003 20.5 2.0 4.7 5 0 0 5 5 4 4 4Fe-4S binding domain Fer4_9 PF13187.6 EME71445.1 - 2.2e-08 34.1 25.2 0.00042 20.4 9.5 3.6 1 1 4 5 5 5 5 4Fe-4S dicluster domain Fer4_2 PF12797.7 EME71445.1 - 5e-08 32.6 32.1 0.0093 16.0 2.8 4.5 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_4 PF12800.7 EME71445.1 - 1e-07 31.9 32.1 0.015 15.8 0.6 4.6 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_10 PF13237.6 EME71445.1 - 2.1e-07 31.0 29.0 0.027 14.6 11.1 3.5 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_17 PF13534.6 EME71445.1 - 1.2e-05 25.8 21.5 0.0073 16.8 0.1 3.8 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 EME71445.1 - 5.7e-05 24.0 28.2 0.11 13.5 0.5 4.1 2 1 1 3 3 3 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 EME71445.1 - 0.00028 20.9 27.3 0.0089 16.1 9.1 3.5 1 1 4 5 5 5 3 4Fe-4S dicluster domain Fer4_8 PF13183.6 EME71445.1 - 0.00052 20.4 24.7 0.063 13.7 0.5 4.0 1 1 4 5 5 5 3 4Fe-4S dicluster domain Fer4_3 PF12798.7 EME71445.1 - 0.017 16.1 41.6 0.17 12.9 6.3 4.6 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_20 PF14691.6 EME71445.1 - 0.34 10.7 17.4 0.27 11.0 3.6 3.1 2 1 1 3 3 3 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_22 PF17179.4 EME71445.1 - 1.6 9.6 22.4 5.2 8.0 0.3 3.7 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_5 PF12801.7 EME71446.1 - 1.9e-16 59.8 8.7 8.8e-14 51.2 0.5 3.5 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_9 PF13187.6 EME71446.1 - 8.4e-09 35.5 10.0 9.6e-05 22.5 1.8 3.2 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.27 EME71446.1 - 8.6e-08 31.7 23.2 0.0084 15.9 3.2 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_6 PF12837.7 EME71446.1 - 2.9e-07 30.3 27.5 9.3e-06 25.5 5.6 4.0 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_7 PF12838.7 EME71446.1 - 8.4e-07 29.5 15.6 0.0022 18.6 13.5 3.4 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_16 PF13484.6 EME71446.1 - 1.3e-06 29.3 10.3 0.032 15.2 0.6 4.1 4 0 0 4 4 4 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 EME71446.1 - 2.8e-05 24.2 14.9 0.00041 20.4 11.8 3.2 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 EME71446.1 - 4.9e-05 23.4 17.7 0.00047 20.2 10.2 3.1 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_3 PF12798.7 EME71446.1 - 0.00078 20.2 25.7 0.85 10.7 3.6 4.3 4 0 0 4 4 4 3 4Fe-4S binding domain Furin-like_2 PF15913.5 EME71446.1 - 0.014 15.6 2.0 0.047 13.8 0.1 2.1 2 0 0 2 2 2 0 Furin-like repeat, cysteine-rich Fer4_8 PF13183.6 EME71446.1 - 0.051 14.0 16.5 0.6 10.6 2.8 3.9 3 1 2 5 5 5 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 EME71446.1 - 0.086 13.4 11.7 0.4 11.3 0.3 3.7 3 1 1 4 4 4 0 4Fe-4S dicluster domain Fer4_2 PF12797.7 EME71446.1 - 0.62 10.3 30.1 0.18 11.9 3.4 4.0 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_4 PF12800.7 EME71446.1 - 0.79 10.4 20.7 0.12 12.9 2.4 3.5 4 0 0 4 4 4 0 4Fe-4S binding domain NapB PF03892.14 EME71447.1 - 2.1e-40 137.7 0.5 2.5e-40 137.4 0.5 1.0 1 0 0 1 1 1 1 Nitrate reductase cytochrome c-type subunit (NapB) Cytochrom_NNT PF03264.14 EME71447.1 - 0.00064 19.5 0.3 0.0018 18.0 0.3 1.7 1 1 0 1 1 1 1 NapC/NirT cytochrome c family, N-terminal region Cytochrome_C7 PF14522.6 EME71447.1 - 0.0057 16.6 0.8 0.016 15.2 0.9 1.7 1 1 0 1 1 1 1 Cytochrome c7 and related cytochrome c Paired_CXXCH_1 PF09699.10 EME71447.1 - 0.016 14.9 1.3 0.1 12.4 1.3 2.1 1 1 1 2 2 2 0 Doubled CXXCH motif (Paired_CXXCH_1) Cytochrome_C554 PF13435.6 EME71447.1 - 0.019 15.9 1.7 1 10.3 1.2 2.2 1 1 1 2 2 2 0 Cytochrome c554 and c-prime Cytochrom_c3_2 PF14537.6 EME71447.1 - 0.027 14.9 1.3 0.064 13.7 1.2 1.6 1 1 0 1 1 1 0 Cytochrome c3 Cytochrome_CBB3 PF13442.6 EME71447.1 - 0.038 14.3 0.4 9.7 6.6 0.0 2.4 1 1 1 2 2 2 0 Cytochrome C oxidase, cbb3-type, subunit III DUF3365 PF11845.8 EME71447.1 - 0.09 13.1 0.3 0.6 10.4 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3365) Cytochrom_NNT PF03264.14 EME71448.1 - 9.9e-75 250.0 3.2 1.1e-74 249.8 3.2 1.0 1 0 0 1 1 1 1 NapC/NirT cytochrome c family, N-terminal region Cytochrom_c3_2 PF14537.6 EME71448.1 - 2.3e-07 31.2 8.6 0.0012 19.3 3.2 2.3 2 0 0 2 2 2 2 Cytochrome c3 Cytochrome_C7 PF14522.6 EME71448.1 - 4.9e-07 29.7 12.9 5.8e-05 23.0 2.8 2.6 2 1 0 2 2 2 2 Cytochrome c7 and related cytochrome c Cytochrom_CIII PF02085.16 EME71448.1 - 2.6e-06 27.7 8.1 0.0047 17.2 2.8 2.4 2 0 0 2 2 2 2 Class III cytochrome C family Paired_CXXCH_1 PF09699.10 EME71448.1 - 0.00023 20.8 12.8 0.022 14.5 2.3 3.2 2 2 1 3 3 3 2 Doubled CXXCH motif (Paired_CXXCH_1) zf-C4pol PF14260.6 EME71448.1 - 0.0036 17.7 5.4 0.45 11.0 1.0 2.7 2 1 0 2 2 2 2 C4-type zinc-finger of DNA polymerase delta Cytochrome_C554 PF13435.6 EME71448.1 - 0.062 14.2 15.0 3.4 8.7 10.1 3.2 1 1 2 3 3 3 0 Cytochrome c554 and c-prime C1_1 PF00130.22 EME71448.1 - 0.13 12.2 5.1 1.8 8.5 0.5 2.8 2 2 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) FixS PF03597.15 EME71448.1 - 0.29 10.9 2.0 0.44 10.3 2.0 1.3 1 0 0 1 1 1 0 Cytochrome oxidase maturation protein cbb3-type zinc_ribbon_9 PF14369.6 EME71448.1 - 0.39 11.0 9.6 17 5.8 0.0 4.0 3 1 1 4 4 4 0 zinc-ribbon zinc-ribbon_6 PF10005.9 EME71448.1 - 0.56 10.9 6.8 2.3 8.9 0.2 2.9 2 1 1 3 3 3 0 zinc-ribbon domain Defensin_5 PF18251.1 EME71448.1 - 1.6 8.9 12.8 6.3 7.0 0.1 3.9 4 0 0 4 4 4 0 Fungal defensin Copsin Cytochrome_P460 PF16694.5 EME71448.1 - 9.2 6.6 21.9 2.3 8.6 0.8 3.9 2 2 2 4 4 4 0 Cytochrome P460 ACPS PF01648.20 EME71449.1 - 7e-18 64.8 0.0 7.3e-18 64.8 0.0 1.1 1 0 0 1 1 1 1 4'-phosphopantetheinyl transferase superfamily Peptidase_S24 PF00717.23 EME71450.1 - 1.6e-18 66.4 0.1 2.7e-18 65.7 0.1 1.4 1 0 0 1 1 1 1 Peptidase S24-like Peptidase_S26 PF10502.9 EME71450.1 - 1.2e-10 41.3 0.1 0.00049 19.9 0.0 2.4 2 1 0 2 2 2 2 Signal peptidase, peptidase S26 Ribonucleas_3_3 PF14622.6 EME71451.1 - 3e-32 111.5 0.0 4.3e-32 111.0 0.0 1.2 1 0 0 1 1 1 1 Ribonuclease-III-like Ribonuclease_3 PF00636.26 EME71451.1 - 4.3e-17 62.6 0.0 7.3e-17 61.9 0.0 1.4 1 0 0 1 1 1 1 Ribonuclease III domain dsrm PF00035.26 EME71451.1 - 6.4e-13 49.2 0.0 9.2e-13 48.7 0.0 1.2 1 0 0 1 1 1 1 Double-stranded RNA binding motif DND1_DSRM PF14709.7 EME71451.1 - 0.0064 16.7 0.0 0.02 15.2 0.0 1.9 1 1 0 1 1 1 1 double strand RNA binding domain from DEAD END PROTEIN 1 MMR_HSR1 PF01926.23 EME71452.1 - 3.6e-25 88.3 0.1 7e-25 87.3 0.1 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase KH_2 PF07650.17 EME71452.1 - 1.6e-19 69.5 0.4 2.9e-19 68.7 0.4 1.5 1 0 0 1 1 1 1 KH domain FeoB_N PF02421.18 EME71452.1 - 2.2e-14 53.3 0.1 3.5e-14 52.6 0.1 1.2 1 0 0 1 1 1 1 Ferrous iron transport protein B Dynamin_N PF00350.23 EME71452.1 - 3.4e-11 43.5 2.3 3e-06 27.4 0.6 2.5 2 1 1 3 3 2 2 Dynamin family GTP_EFTU PF00009.27 EME71452.1 - 6.7e-11 42.1 0.3 6.1e-08 32.4 0.3 2.8 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain RsgA_GTPase PF03193.16 EME71452.1 - 3.9e-09 36.6 0.1 0.0011 18.9 0.0 2.4 2 0 0 2 2 2 2 RsgA GTPase PduV-EutP PF10662.9 EME71452.1 - 5.3e-09 36.0 0.0 1.9e-08 34.2 0.0 1.8 1 1 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation AIG1 PF04548.16 EME71452.1 - 4.4e-07 29.4 0.1 6.7e-07 28.8 0.1 1.2 1 0 0 1 1 1 1 AIG1 family cobW PF02492.19 EME71452.1 - 4.3e-06 26.4 0.5 0.00039 20.1 0.0 2.4 1 1 1 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain Arf PF00025.21 EME71452.1 - 0.00022 20.7 0.1 0.61 9.5 0.1 2.4 2 0 0 2 2 2 2 ADP-ribosylation factor family SRP54 PF00448.22 EME71452.1 - 0.0021 17.7 0.3 0.2 11.2 0.0 2.3 2 1 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_28 PF13521.6 EME71452.1 - 0.0021 18.3 1.0 0.081 13.2 0.1 2.9 2 1 1 3 3 3 1 AAA domain FtsK_SpoIIIE PF01580.18 EME71452.1 - 0.0042 16.5 0.1 0.034 13.5 0.0 2.1 2 0 0 2 2 2 1 FtsK/SpoIIIE family GBP PF02263.19 EME71452.1 - 0.0088 15.3 0.0 0.017 14.4 0.0 1.5 1 0 0 1 1 1 1 Guanylate-binding protein, N-terminal domain ATP_bind_1 PF03029.17 EME71452.1 - 0.0095 15.7 0.0 2.1 8.1 0.0 2.3 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein AAA_22 PF13401.6 EME71452.1 - 0.025 14.8 0.1 0.093 13.0 0.0 2.0 2 1 0 2 2 2 0 AAA domain Ras PF00071.22 EME71452.1 - 0.027 14.1 0.0 0.091 12.4 0.0 1.8 1 1 0 1 1 1 0 Ras family AAA_16 PF13191.6 EME71452.1 - 0.029 14.8 1.2 0.5 10.7 0.2 2.8 2 1 0 2 2 2 0 AAA ATPase domain MeaB PF03308.16 EME71452.1 - 0.03 13.3 0.2 0.22 10.5 0.1 2.2 1 1 1 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB MMR_HSR1_Xtn PF16897.5 EME71452.1 - 0.039 14.0 0.0 0.094 12.7 0.0 1.6 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain ABC_tran PF00005.27 EME71452.1 - 0.052 14.1 0.3 0.15 12.5 0.1 2.1 2 1 0 2 2 2 0 ABC transporter AAA_29 PF13555.6 EME71452.1 - 0.097 12.4 0.0 0.21 11.3 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Roc PF08477.13 EME71452.1 - 0.13 12.5 0.2 1.1 9.5 0.0 2.2 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase DUF4131 PF13567.6 EME71453.1 - 1.3 8.7 5.2 1.7 8.3 5.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) RecO_C PF02565.15 EME71454.1 - 1.2e-27 96.6 0.8 1.9e-27 96.0 0.8 1.3 1 0 0 1 1 1 1 Recombination protein O C terminal RecO_N PF11967.8 EME71454.1 - 8.6e-15 54.5 0.0 1.4e-14 53.8 0.0 1.3 1 0 0 1 1 1 1 Recombination protein O N terminal AMP-binding PF00501.28 EME71455.1 - 2.9e-80 269.9 0.0 3.9e-80 269.5 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 EME71455.1 - 2.4e-23 82.9 0.1 5.6e-23 81.7 0.1 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain LysE PF01810.18 EME71456.1 - 2e-32 112.2 10.6 2.3e-32 112.0 10.6 1.0 1 0 0 1 1 1 1 LysE type translocator TerC PF03741.16 EME71456.1 - 0.064 12.9 0.3 0.064 12.9 0.3 2.0 2 0 0 2 2 2 0 Integral membrane protein TerC family SfLAP PF11139.8 EME71456.1 - 0.68 9.3 15.1 0.43 10.0 12.7 2.0 1 1 1 2 2 2 0 Sap, sulfolipid-1-addressing protein DUF543 PF04418.12 EME71456.1 - 7.8 6.6 8.0 4.5 7.3 0.5 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF543) GIY-YIG PF01541.24 EME71457.1 - 7.1e-11 42.2 0.0 8.3e-11 42.0 0.0 1.0 1 0 0 1 1 1 1 GIY-YIG catalytic domain MFS_4 PF06779.14 EME71458.1 - 1.7e-74 251.3 41.4 1.9e-74 251.1 41.4 1.0 1 0 0 1 1 1 1 Uncharacterised MFS-type transporter YbfB MFS_1 PF07690.16 EME71458.1 - 8.1e-11 41.4 63.3 1.2e-08 34.3 32.3 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily LysR_substrate PF03466.20 EME71459.1 - 1.2e-35 122.7 4.6 1.2e-35 122.7 4.6 1.4 2 0 0 2 2 2 1 LysR substrate binding domain HTH_1 PF00126.27 EME71459.1 - 1.2e-19 70.0 1.3 4.3e-19 68.2 1.3 1.9 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family Sacchrp_dh_NADP PF03435.18 EME71460.1 - 9.7e-31 106.7 0.0 1.6e-30 106.0 0.0 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain Sacchrp_dh_C PF16653.5 EME71460.1 - 9.1e-30 104.6 0.0 1.5e-29 104.0 0.0 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase C-terminal domain F420_oxidored PF03807.17 EME71460.1 - 0.058 14.0 0.2 0.14 12.8 0.2 1.6 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent DUF228 PF02989.14 EME71460.1 - 0.16 11.8 0.0 0.24 11.2 0.0 1.2 1 0 0 1 1 1 0 Lyme disease proteins of unknown function DUF1328 PF07043.13 EME71462.1 - 1.1 9.5 3.9 16 5.8 0.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1328) RHH_4 PF13467.6 EME71463.1 - 1.2e-20 73.1 0.3 2e-20 72.4 0.3 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix domain DUF3426 PF11906.8 EME71463.1 - 0.13 12.4 0.0 0.28 11.4 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3426) Acetyltransf_1 PF00583.25 EME71464.1 - 0.0015 18.8 0.2 0.0023 18.2 0.2 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_9 PF13527.7 EME71464.1 - 0.023 14.7 0.1 0.35 11.0 0.1 2.1 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 EME71464.1 - 0.15 12.0 0.0 0.19 11.6 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain HTH_1 PF00126.27 EME71465.1 - 9.2e-18 63.9 0.0 1.7e-17 63.1 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family LysR_substrate PF03466.20 EME71465.1 - 5.7e-12 45.4 0.4 1.4e-11 44.2 0.4 1.6 1 0 0 1 1 1 1 LysR substrate binding domain HTH_28 PF13518.6 EME71465.1 - 0.019 15.1 0.2 0.051 13.7 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_3 PF01381.22 EME71466.1 - 5.8e-13 48.7 0.4 1.5e-12 47.4 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.6 EME71466.1 - 1.1e-07 32.1 0.0 2.5e-07 31.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 EME71466.1 - 4.6e-06 26.6 0.0 8.2e-06 25.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 EME71466.1 - 0.029 14.8 0.0 0.057 13.9 0.0 1.5 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain PBP_like PF12727.7 EME71467.1 - 7.6e-55 185.0 0.1 1e-54 184.6 0.1 1.1 1 0 0 1 1 1 1 PBP superfamily domain HTH_17 PF12728.7 EME71467.1 - 1.4e-13 50.8 0.4 4.9e-13 49.0 0.2 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain SBP_bac_11 PF13531.6 EME71467.1 - 0.0037 17.0 0.7 0.0051 16.6 0.7 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein ANT PF03374.14 EME71467.1 - 0.019 15.3 0.0 0.035 14.4 0.0 1.4 1 0 0 1 1 1 0 Phage antirepressor protein KilAC domain DUF2478 PF10649.9 EME71468.1 - 5.5e-53 178.8 0.0 6.4e-53 178.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2478) NTPase_1 PF03266.15 EME71468.1 - 4.5e-05 23.4 0.0 5.9e-05 23.0 0.0 1.1 1 0 0 1 1 1 1 NTPase EAL PF00563.20 EME71469.1 - 8.3e-72 241.5 0.3 1.3e-71 240.9 0.3 1.3 1 0 0 1 1 1 1 EAL domain GGDEF PF00990.21 EME71469.1 - 1.8e-51 174.1 0.1 3.1e-51 173.3 0.1 1.4 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain DUF3365 PF11845.8 EME71469.1 - 1.2e-23 84.2 0.0 2.4e-23 83.2 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF3365) PAS_9 PF13426.7 EME71469.1 - 9.3e-15 54.8 0.0 1.9e-14 53.8 0.0 1.6 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 EME71469.1 - 4.9e-11 42.6 0.0 1.4e-10 41.1 0.0 1.8 1 0 0 1 1 1 1 PAS fold PAS_3 PF08447.12 EME71469.1 - 2.2e-09 37.5 0.5 4.9e-09 36.3 0.5 1.7 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.10 EME71469.1 - 1.8e-06 28.2 0.2 3.9e-05 23.9 0.1 3.0 2 0 0 2 2 2 1 PAS fold PAS_8 PF13188.7 EME71469.1 - 0.00033 20.6 0.1 0.0051 16.8 0.0 2.9 2 0 0 2 2 2 1 PAS domain CEBP_ZZ PF16366.5 EME71469.1 - 0.22 11.8 0.0 0.49 10.7 0.0 1.5 1 0 0 1 1 1 0 Cytoplasmic polyadenylation element-binding protein ZZ domain Chromate_transp PF02417.15 EME71470.1 - 6.7e-66 221.3 38.2 5.1e-35 120.9 12.7 2.3 2 0 0 2 2 2 2 Chromate transporter MFS_1_like PF12832.7 EME71472.1 - 2.5e-57 194.5 14.3 5e-57 193.5 14.3 1.4 1 1 0 1 1 1 1 MFS_1 like family LacY_symp PF01306.19 EME71472.1 - 5e-17 61.8 9.9 1.1e-09 37.5 2.7 2.1 2 0 0 2 2 2 2 LacY proton/sugar symporter MFS_1 PF07690.16 EME71472.1 - 4.1e-15 55.6 57.4 8.6e-13 47.9 27.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Nuc_H_symport PF03825.16 EME71472.1 - 5.7e-13 48.6 14.3 8.4e-13 48.1 14.3 1.2 1 0 0 1 1 1 1 Nucleoside H+ symporter YdjC PF04794.12 EME71473.1 - 1.5e-45 156.0 0.0 1.7e-45 155.8 0.0 1.0 1 0 0 1 1 1 1 YdjC-like protein HTH_20 PF12840.7 EME71473.1 - 0.88 9.7 4.6 0.4 10.8 0.2 2.5 3 0 0 3 3 3 0 Helix-turn-helix domain Lipase_GDSL_2 PF13472.6 EME71474.1 - 1e-09 39.0 1.5 4.1e-09 37.1 1.5 2.0 1 1 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family ALGX PF16822.5 EME71474.1 - 0.0038 16.9 0.0 0.0074 16.0 0.0 1.5 1 0 0 1 1 1 1 SGNH hydrolase-like domain, acetyltransferase AlgX HATPase_c PF02518.26 EME71475.1 - 1.5e-20 73.7 0.0 2.6e-20 73.0 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 EME71475.1 - 1.6e-17 63.3 0.6 3.9e-16 58.8 0.1 3.1 2 1 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.10 EME71475.1 - 4e-06 27.0 0.2 1.4e-05 25.3 0.1 2.1 2 1 0 2 2 2 1 PAS fold PAS PF00989.25 EME71475.1 - 1.3e-05 25.2 0.0 2.9e-05 24.0 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 EME71475.1 - 1.6e-05 24.8 0.1 0.00013 21.9 0.1 2.4 2 0 0 2 2 2 1 PAS domain PAS_9 PF13426.7 EME71475.1 - 0.00016 21.9 0.0 0.00035 20.8 0.0 1.6 1 0 0 1 1 1 1 PAS domain HATPase_c_3 PF13589.6 EME71475.1 - 0.00021 21.1 0.0 0.00038 20.3 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.6 EME71475.1 - 0.0099 15.8 0.0 0.024 14.6 0.0 1.6 1 0 0 1 1 1 1 GHKL domain Sigma54_activat PF00158.26 EME71476.1 - 1.4e-66 223.3 0.0 2.3e-66 222.6 0.0 1.3 1 0 0 1 1 1 1 Sigma-54 interaction domain Response_reg PF00072.24 EME71476.1 - 5.8e-22 78.0 0.0 1.1e-21 77.1 0.0 1.5 1 0 0 1 1 1 1 Response regulator receiver domain Sigma54_activ_2 PF14532.6 EME71476.1 - 3.8e-21 75.6 0.0 3.7e-20 72.4 0.0 2.6 2 1 0 2 2 2 1 Sigma-54 interaction domain HTH_8 PF02954.19 EME71476.1 - 1.4e-09 37.5 2.1 3.4e-09 36.3 2.1 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family AAA_5 PF07728.14 EME71476.1 - 2.7e-07 30.7 0.0 8.8e-07 29.0 0.0 1.9 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 EME71476.1 - 6.7e-05 23.3 0.0 0.00013 22.3 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) HTH_50 PF18024.1 EME71476.1 - 0.0016 18.0 0.1 0.0043 16.6 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain Mg_chelatase PF01078.21 EME71476.1 - 0.02 14.3 0.0 7.3 5.9 0.0 2.4 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_2 PF07724.14 EME71476.1 - 0.076 13.1 0.0 0.33 11.1 0.0 1.9 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) MCM PF00493.23 EME71476.1 - 0.19 10.8 0.0 0.85 8.7 0.0 1.9 1 1 0 1 1 1 0 MCM P-loop domain Resolvase PF00239.21 EME71478.1 - 1.5e-31 109.5 1.3 2.6e-31 108.7 1.3 1.4 1 0 0 1 1 1 1 Resolvase, N terminal domain Recombinase PF07508.13 EME71478.1 - 0.00014 22.2 0.0 0.00027 21.3 0.0 1.4 1 0 0 1 1 1 1 Recombinase SLATT_1 PF18181.1 EME71479.1 - 0.055 13.4 0.0 0.064 13.2 0.0 1.1 1 0 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain 1 CoA_transf_3 PF02515.17 EME71481.1 - 6.2e-53 180.2 0.3 3.1e-45 154.9 0.2 2.3 2 0 0 2 2 2 2 CoA-transferase family III BAT PF15915.5 EME71481.1 - 0.37 10.6 1.8 12 5.7 0.0 2.7 3 0 0 3 3 3 0 GAF and HTH_10 associated domain Response_reg PF00072.24 EME71482.1 - 1.9e-14 53.8 0.0 2e-13 50.5 0.0 2.2 2 0 0 2 2 2 1 Response regulator receiver domain Hemerythrin PF01814.23 EME71482.1 - 1.8e-07 31.8 3.1 3.3e-07 31.0 3.1 1.4 1 0 0 1 1 1 1 Hemerythrin HHE cation binding domain UvrD-helicase PF00580.21 EME71484.1 - 8.3e-70 235.8 0.0 1.9e-69 234.6 0.0 1.6 1 1 0 1 1 1 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.6 EME71484.1 - 9.4e-61 206.1 0.0 1.3e-59 202.4 0.0 2.0 1 1 0 1 1 1 1 UvrD-like helicase C-terminal domain AAA_19 PF13245.6 EME71484.1 - 3.5e-29 102.0 0.1 2.1e-28 99.5 0.0 2.2 2 1 0 2 2 2 1 AAA domain AAA_30 PF13604.6 EME71484.1 - 9.2e-11 41.8 0.6 3.2e-07 30.3 0.1 3.6 2 1 0 2 2 2 1 AAA domain UvrD_C_2 PF13538.6 EME71484.1 - 4.6e-10 39.2 0.3 2.7e-09 36.7 0.1 2.4 2 1 0 2 2 2 1 UvrD-like helicase C-terminal domain Viral_helicase1 PF01443.18 EME71484.1 - 3.3e-07 30.3 0.1 0.073 12.8 0.0 3.7 3 1 0 3 3 3 2 Viral (Superfamily 1) RNA helicase DinB_2 PF12867.7 EME71484.1 - 0.026 15.0 2.2 0.039 14.5 0.4 2.4 2 0 0 2 2 2 0 DinB superfamily AAA_12 PF13087.6 EME71484.1 - 0.084 12.5 0.0 1.9 8.0 0.0 2.4 2 1 0 2 2 2 0 AAA domain AAA_16 PF13191.6 EME71484.1 - 0.34 11.3 2.2 0.68 10.3 0.5 2.4 2 1 0 2 2 2 0 AAA ATPase domain PrmA PF06325.13 EME71485.1 - 5.8e-55 186.8 0.0 6.3e-55 186.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 EME71485.1 - 4.2e-11 42.7 0.0 7.2e-11 41.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.6 EME71485.1 - 4.8e-08 33.6 0.0 1.2e-07 32.4 0.0 1.7 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_16 PF10294.9 EME71485.1 - 5.9e-07 29.4 0.0 1e-06 28.6 0.0 1.3 1 0 0 1 1 1 1 Lysine methyltransferase Methyltransf_31 PF13847.6 EME71485.1 - 1.3e-06 28.3 0.0 1.8e-06 27.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.16 EME71485.1 - 4.6e-06 26.5 0.0 6e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Cons_hypoth95 PF03602.15 EME71485.1 - 1.5e-05 24.7 0.0 2.6e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_23 PF13489.6 EME71485.1 - 0.00028 20.8 0.0 0.0012 18.7 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 EME71485.1 - 0.0057 17.3 0.0 0.015 16.0 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.7 EME71485.1 - 0.016 15.2 0.0 0.023 14.6 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain PCMT PF01135.19 EME71485.1 - 0.02 14.6 0.0 0.027 14.2 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_15 PF09445.10 EME71485.1 - 0.02 14.5 0.0 0.028 14.0 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Adeno_PIX PF03955.14 EME71485.1 - 0.036 14.2 0.4 3.7 7.7 0.0 2.6 2 1 0 2 2 2 0 Adenovirus hexon-associated protein (IX) Rsm22 PF09243.10 EME71485.1 - 0.045 13.0 0.0 0.069 12.4 0.0 1.2 1 0 0 1 1 1 0 Mitochondrial small ribosomal subunit Rsm22 TRM PF02005.16 EME71485.1 - 0.048 12.8 0.0 0.066 12.4 0.0 1.1 1 0 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase ADH_zinc_N PF00107.26 EME71485.1 - 0.063 13.3 0.0 0.14 12.2 0.0 1.6 1 0 0 1 1 1 0 Zinc-binding dehydrogenase Methyltransf_32 PF13679.6 EME71485.1 - 0.14 12.2 0.0 0.21 11.5 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain GidB PF02527.15 EME71485.1 - 0.23 10.7 0.0 0.38 10.1 0.0 1.2 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G MCPsignal PF00015.21 EME71486.1 - 5.5e-29 101.2 27.9 5.5e-29 101.2 27.9 4.3 3 2 1 4 4 4 1 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 EME71486.1 - 1.2e-09 38.3 6.1 9.1e-09 35.6 0.1 4.3 3 0 0 3 3 3 1 HAMP domain 4HB_MCP_1 PF12729.7 EME71486.1 - 6.1e-06 25.9 0.0 6.1e-06 25.9 0.0 3.7 3 2 0 4 4 4 1 Four helix bundle sensory module for signal transduction DUF1664 PF07889.12 EME71486.1 - 3.9 7.5 13.4 5.7 7.0 1.2 4.4 3 2 2 5 5 5 0 Protein of unknown function (DUF1664) EAL PF00563.20 EME71487.1 - 6.7e-60 202.6 0.1 1.5e-59 201.4 0.1 1.5 1 0 0 1 1 1 1 EAL domain GGDEF PF00990.21 EME71487.1 - 1e-44 152.1 0.0 1.8e-44 151.3 0.0 1.4 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain DUF3365 PF11845.8 EME71487.1 - 4.6e-05 23.8 0.0 0.00026 21.3 0.0 2.3 1 1 0 1 1 1 1 Protein of unknown function (DUF3365) GGDEF_2 PF17853.1 EME71487.1 - 0.04 14.2 1.0 0.34 11.2 0.1 2.7 2 0 0 2 2 2 0 GGDEF-like domain tRNA_edit PF04073.15 EME71488.1 - 2.5e-27 95.4 0.0 3.1e-27 95.1 0.0 1.1 1 0 0 1 1 1 1 Aminoacyl-tRNA editing domain MlaC PF05494.12 EME71489.1 - 1.5e-23 83.3 0.0 1.9e-23 83.0 0.0 1.1 1 0 0 1 1 1 1 MlaC protein GMP_synt_C PF00958.22 EME71491.1 - 6.3e-44 148.0 0.0 1.2e-43 147.0 0.0 1.5 1 0 0 1 1 1 1 GMP synthase C terminal domain GATase PF00117.28 EME71491.1 - 3.8e-41 141.0 0.0 5.3e-41 140.5 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 EME71491.1 - 6.4e-10 39.2 0.0 1.9e-09 37.6 0.0 1.9 1 0 0 1 1 1 1 Peptidase C26 NAD_synthase PF02540.17 EME71491.1 - 1.2e-09 37.6 0.2 3.8e-06 26.2 0.1 2.2 2 0 0 2 2 2 2 NAD synthase tRNA_Me_trans PF03054.16 EME71491.1 - 1e-05 24.5 0.2 4e-05 22.6 0.1 1.8 2 0 0 2 2 2 1 tRNA methyl transferase Asn_synthase PF00733.21 EME71491.1 - 0.0015 18.3 0.2 0.0015 18.3 0.2 1.5 2 0 0 2 2 2 1 Asparagine synthase QueC PF06508.13 EME71491.1 - 0.0021 17.6 0.0 0.31 10.5 0.0 2.2 2 0 0 2 2 2 2 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.20 EME71491.1 - 0.012 15.3 0.0 0.019 14.7 0.0 1.4 1 0 0 1 1 1 0 PP-loop family ThiI PF02568.14 EME71491.1 - 0.039 13.5 0.0 0.1 12.2 0.1 1.6 2 0 0 2 2 2 0 Thiamine biosynthesis protein (ThiI) PAPS_reduct PF01507.19 EME71491.1 - 0.076 13.1 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family AHSA1 PF08327.11 EME71492.1 - 1.3e-18 67.4 0.0 1.5e-18 67.2 0.0 1.0 1 0 0 1 1 1 1 Activator of Hsp90 ATPase homolog 1-like protein Polyketide_cyc2 PF10604.9 EME71492.1 - 0.00094 19.5 0.2 0.0012 19.1 0.2 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport HTH_20 PF12840.7 EME71493.1 - 4.3e-12 45.9 0.0 6.7e-12 45.3 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 EME71493.1 - 1.1e-07 31.6 0.0 1.6e-07 31.0 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 EME71493.1 - 0.0043 16.9 0.1 0.007 16.2 0.1 1.5 1 1 0 1 1 1 1 MarR family MarR PF01047.22 EME71493.1 - 0.0044 16.9 0.0 0.0089 15.9 0.0 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 EME71493.1 - 0.012 15.4 0.0 0.019 14.8 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 EME71493.1 - 0.022 14.5 0.1 0.062 13.1 0.0 1.9 2 0 0 2 2 2 0 IclR helix-turn-helix domain Prok-RING_1 PF14446.6 EME71495.1 - 0.4 10.6 10.4 1.1 9.3 10.4 1.7 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 Peptidase_M57 PF12388.8 EME71496.1 - 0.081 12.5 0.0 0.089 12.4 0.0 1.0 1 0 0 1 1 1 0 Dual-action HEIGH metallo-peptidase Hemerythrin PF01814.23 EME71497.1 - 8.4e-08 32.9 2.0 1.1e-07 32.5 2.0 1.1 1 0 0 1 1 1 1 Hemerythrin HHE cation binding domain Peptidase_M24 PF00557.24 EME71498.1 - 3.7e-50 170.5 0.0 5.4e-50 170.0 0.0 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N_2 PF16189.5 EME71498.1 - 1.5e-33 116.2 0.0 3.7e-33 114.9 0.0 1.6 2 0 0 2 2 2 1 Creatinase/Prolidase N-terminal domain Peptidase_M24_C PF16188.5 EME71498.1 - 1.9e-23 82.3 0.1 1.5e-22 79.4 0.0 2.3 2 0 0 2 2 2 1 C-terminal region of peptidase_M24 Creatinase_N PF01321.18 EME71498.1 - 3.4e-20 73.1 0.0 1.1e-13 52.0 0.0 2.3 2 0 0 2 2 2 2 Creatinase/Prolidase N-terminal domain UbiA PF01040.18 EME71500.1 - 2.3e-46 158.2 38.9 3e-46 157.8 38.9 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family COPI_assoc PF08507.10 EME71500.1 - 4.2 7.4 8.2 3 7.9 5.0 2.4 1 1 0 2 2 2 0 COPI associated protein DUF1129 PF06570.11 EME71500.1 - 8.6 5.8 14.4 0.54 9.7 4.8 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF1129) DUF420 PF04238.12 EME71501.1 - 6.9e-42 142.8 10.6 7.8e-42 142.7 10.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF420) DUF2306 PF10067.9 EME71501.1 - 3.7e-06 27.2 10.3 0.0013 19.0 0.9 2.2 2 0 0 2 2 2 2 Predicted membrane protein (DUF2306) AA_permease_2 PF13520.6 EME71501.1 - 0.0027 16.6 3.1 0.0027 16.6 3.1 1.8 1 1 1 2 2 2 1 Amino acid permease Spore_YhaL PF14147.6 EME71501.1 - 0.12 12.1 1.6 15 5.3 1.8 2.5 2 0 0 2 2 2 0 Sporulation protein YhaL CitMHS PF03600.16 EME71502.1 - 5.2e-27 94.8 25.3 5.2e-27 94.8 25.3 1.7 1 1 1 2 2 2 1 Citrate transporter adh_short PF00106.25 EME71503.1 - 1.1e-45 155.5 0.0 1.4e-45 155.1 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 EME71503.1 - 8.3e-31 107.3 0.2 1e-30 107.1 0.2 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 EME71503.1 - 4.3e-13 49.6 0.1 5.8e-13 49.1 0.1 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 EME71503.1 - 0.037 13.5 0.2 0.049 13.1 0.2 1.2 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 EME71503.1 - 0.046 12.8 0.3 0.064 12.4 0.3 1.2 1 0 0 1 1 1 0 RmlD substrate binding domain 3HCDH_N PF02737.18 EME71503.1 - 0.071 13.0 0.1 0.096 12.6 0.1 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DUF86 PF01934.17 EME71504.1 - 4.4e-28 97.5 0.0 5e-28 97.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 DUF2461 PF09365.10 EME71504.1 - 0.094 12.7 0.0 0.11 12.4 0.0 1.1 1 0 0 1 1 1 0 Conserved hypothetical protein (DUF2461) NTase_sub_bind PF08780.11 EME71504.1 - 0.17 11.8 0.1 0.66 10.0 0.1 1.9 1 1 1 2 2 2 0 Nucleotidyltransferase substrate binding protein like NTP_transf_2 PF01909.23 EME71505.1 - 9e-13 48.3 0.0 1.3e-12 47.8 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 EME71505.1 - 9.6e-12 44.8 0.0 1.4e-11 44.4 0.0 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DnaB_bind PF10410.9 EME71505.1 - 0.077 13.2 0.4 0.16 12.2 0.4 1.5 1 0 0 1 1 1 0 DnaB-helicase binding domain of primase DUF1732 PF08340.11 EME71506.1 - 9.4e-34 115.3 0.2 2.5e-33 113.9 0.2 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF1732) YicC_N PF03755.13 EME71506.1 - 2.3e-33 115.8 0.4 2.3e-33 115.8 0.4 1.9 2 0 0 2 2 2 1 YicC-like family, N-terminal region DUF2018 PF09442.10 EME71506.1 - 0.11 13.5 1.1 8.1 7.5 0.0 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF2018) HTH_32 PF13565.6 EME71506.1 - 0.4 11.3 6.4 2.9 8.6 0.7 3.1 1 1 2 3 3 3 0 Homeodomain-like domain DinB_2 PF12867.7 EME71506.1 - 2 8.9 8.9 1.8e+02 2.7 8.9 2.7 1 1 0 1 1 1 0 DinB superfamily Guanylate_kin PF00625.21 EME71507.1 - 3.6e-53 180.0 0.0 4.3e-53 179.7 0.0 1.0 1 0 0 1 1 1 1 Guanylate kinase AAA_33 PF13671.6 EME71507.1 - 3e-06 27.4 0.0 6.9e-06 26.3 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 EME71507.1 - 0.0013 19.3 0.0 0.0037 17.8 0.0 1.8 1 1 0 1 1 1 1 AAA domain Thymidylate_kin PF02223.17 EME71507.1 - 0.017 14.8 0.0 0.21 11.3 0.0 2.1 2 0 0 2 2 2 0 Thymidylate kinase MMR_HSR1 PF01926.23 EME71507.1 - 0.018 15.1 0.0 0.041 14.0 0.0 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase Viral_helicase1 PF01443.18 EME71507.1 - 0.066 12.9 0.0 0.077 12.7 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase CPT PF07931.12 EME71507.1 - 0.096 12.5 0.7 0.41 10.5 0.7 2.0 1 1 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein AAA_22 PF13401.6 EME71507.1 - 0.13 12.6 0.0 0.34 11.2 0.0 1.7 1 1 0 1 1 1 0 AAA domain Ni_hydr_CYTB PF01292.20 EME71508.1 - 6e-18 65.1 10.0 6e-18 65.1 10.0 1.9 2 0 0 2 2 2 1 Prokaryotic cytochrome b561 T_cell_tran_alt PF15128.6 EME71508.1 - 0.0073 16.1 0.1 3.3 7.6 0.0 2.4 2 0 0 2 2 2 2 T-cell leukemia translocation-altered Fis1_TPR_N PF14852.6 EME71508.1 - 0.017 14.8 0.1 0.026 14.2 0.1 1.3 1 0 0 1 1 1 0 Fis1 N-terminal tetratricopeptide repeat Ferric_reduct PF01794.19 EME71508.1 - 0.018 15.2 2.1 0.018 15.2 2.1 2.1 1 1 1 2 2 2 0 Ferric reductase like transmembrane component CAP_N PF01213.19 EME71508.1 - 4.8 6.6 4.5 6.4 6.2 4.5 1.1 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal Cytochrom_C_2 PF01322.20 EME71509.1 - 2.9e-33 115.3 3.4 3.9e-33 114.9 3.4 1.2 1 0 0 1 1 1 1 Cytochrome C' Cytochrom_B562 PF07361.11 EME71509.1 - 0.2 12.3 2.4 0.85 10.3 2.4 2.0 1 1 0 1 1 1 0 Cytochrome b562 ADH_zinc_N PF00107.26 EME71510.1 - 4.7e-29 101.0 0.5 1.1e-28 99.9 0.5 1.6 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 EME71510.1 - 8.9e-21 75.3 0.0 2.1e-20 74.1 0.0 1.6 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 EME71510.1 - 2.6e-10 40.1 0.7 5e-10 39.2 0.1 1.8 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain HK97-gp10_like PF04883.12 EME71512.1 - 0.17 12.9 0.0 0.19 12.7 0.0 1.3 1 1 0 1 1 1 0 Bacteriophage HK97-gp10, putative tail-component Nudix_N_2 PF14803.6 EME71513.1 - 7.9e-09 35.3 0.0 1.4e-08 34.5 0.0 1.4 1 0 0 1 1 1 1 Nudix N-terminal NUDIX PF00293.28 EME71513.1 - 8.2e-09 35.6 0.1 1e-08 35.3 0.1 1.2 1 0 0 1 1 1 1 NUDIX domain TPR_12 PF13424.6 EME71514.1 - 4.8e-14 52.4 33.1 2e-08 34.4 5.7 3.7 2 1 3 5 5 5 5 Tetratricopeptide repeat SNAP PF14938.6 EME71514.1 - 2.5e-08 33.7 9.1 0.00022 20.7 0.1 2.9 1 1 1 2 2 2 2 Soluble NSF attachment protein, SNAP TPR_2 PF07719.17 EME71514.1 - 6.9e-07 28.9 28.8 1.3 9.3 0.6 7.1 5 1 2 7 7 7 5 Tetratricopeptide repeat TPR_MalT PF17874.1 EME71514.1 - 0.00013 21.5 18.5 0.00022 20.7 18.5 1.4 1 1 0 1 1 1 1 MalT-like TPR region TPR_19 PF14559.6 EME71514.1 - 0.00019 21.9 26.6 0.023 15.2 0.4 5.2 2 2 3 5 5 5 3 Tetratricopeptide repeat TPR_8 PF13181.6 EME71514.1 - 0.0087 16.2 10.9 19 5.8 0.2 6.1 6 0 0 6 6 6 0 Tetratricopeptide repeat DUF2225 PF09986.9 EME71514.1 - 0.024 14.4 0.0 1.8 8.3 0.0 2.7 1 1 2 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2225) TPR_10 PF13374.6 EME71514.1 - 0.038 13.9 1.8 0.038 13.9 1.8 6.4 7 0 0 7 7 7 0 Tetratricopeptide repeat NRBF2_MIT PF17169.4 EME71514.1 - 0.061 13.6 2.7 0.15 12.3 0.4 2.6 1 1 1 2 2 2 0 MIT domain of nuclear receptor-binding factor 2 TPR_1 PF00515.28 EME71514.1 - 0.066 13.1 15.7 2.1 8.3 0.1 5.5 5 1 2 7 7 7 0 Tetratricopeptide repeat Wzy_C_2 PF11846.8 EME71514.1 - 0.42 10.5 11.8 0.65 9.9 0.1 4.0 2 1 3 5 5 5 0 Virulence factor membrane-bound polymerase, C-terminal TPR_11 PF13414.6 EME71514.1 - 0.96 9.2 0.0 0.96 9.2 0.0 3.2 4 0 0 4 4 4 0 TPR repeat Pentapeptide PF00805.22 EME71515.1 - 3.7e-21 74.4 11.5 1.1e-08 34.5 3.0 3.6 1 1 1 3 3 3 3 Pentapeptide repeats (8 copies) Pentapeptide_4 PF13599.6 EME71515.1 - 8.7e-11 41.8 0.0 5.8e-05 23.2 0.0 2.2 1 1 1 2 2 2 2 Pentapeptide repeats (9 copies) Pentapeptide_3 PF13576.6 EME71515.1 - 7.7e-10 38.8 0.9 0.00025 21.1 1.0 3.5 1 1 2 3 3 3 3 Pentapeptide repeats (9 copies) GGDEF PF00990.21 EME71516.1 - 1.2e-49 168.1 0.2 1e-48 165.1 0.3 2.2 2 0 0 2 2 2 1 Diguanylate cyclase, GGDEF domain Phage_GP20 PF06810.11 EME71516.1 - 0.0022 17.8 1.0 0.0057 16.5 1.0 1.6 1 0 0 1 1 1 1 Phage minor structural protein GP20 DUF2884 PF11101.8 EME71516.1 - 0.0064 16.0 0.0 0.93 8.9 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF2884) Mod_r PF07200.13 EME71516.1 - 0.013 15.6 0.2 0.03 14.4 0.2 1.6 1 0 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein Prefoldin_2 PF01920.20 EME71516.1 - 0.021 14.8 0.0 0.055 13.4 0.0 1.7 1 0 0 1 1 1 0 Prefoldin subunit Vps54_N PF10475.9 EME71516.1 - 0.049 12.9 0.1 2.2 7.5 0.2 2.2 2 0 0 2 2 2 0 Vacuolar-sorting protein 54, of GARP complex SbcD_C PF12320.8 EME71516.1 - 0.054 13.8 1.1 0.15 12.4 1.1 1.8 1 1 0 1 1 1 0 Type 5 capsule protein repressor C-terminal domain GGDEF_2 PF17853.1 EME71516.1 - 0.076 13.3 0.3 0.26 11.5 0.1 2.0 2 0 0 2 2 2 0 GGDEF-like domain Csm1_N PF18504.1 EME71516.1 - 0.085 13.2 0.9 0.24 11.7 0.9 1.8 1 0 0 1 1 1 0 Csm1 N-terminal domain PKcGMP_CC PF16808.5 EME71516.1 - 0.09 12.6 1.4 0.21 11.5 1.4 1.5 1 0 0 1 1 1 0 Coiled-coil N-terminus of cGMP-dependent protein kinase OmpH PF03938.14 EME71516.1 - 0.12 12.8 0.7 0.22 11.8 0.1 1.8 2 0 0 2 2 2 0 Outer membrane protein (OmpH-like) Response_reg PF00072.24 EME71517.1 - 1.6e-23 83.0 0.7 2.3e-23 82.5 0.7 1.3 1 0 0 1 1 1 1 Response regulator receiver domain Hydrolase PF00702.26 EME71517.1 - 0.022 15.0 0.0 0.049 13.9 0.0 1.6 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase RNase_H PF00075.24 EME71519.1 - 1.5e-51 174.4 0.0 1.7e-51 174.2 0.0 1.0 1 0 0 1 1 1 1 RNase H RVT_3 PF13456.6 EME71519.1 - 0.028 14.2 0.1 0.17 11.7 0.0 2.0 2 0 0 2 2 2 0 Reverse transcriptase-like APH PF01636.23 EME71520.1 - 4.1e-35 121.8 0.1 5.1e-35 121.5 0.1 1.1 1 0 0 1 1 1 1 Phosphotransferase enzyme family Choline_kinase PF01633.20 EME71520.1 - 0.00024 20.8 0.1 0.00036 20.2 0.1 1.2 1 0 0 1 1 1 1 Choline/ethanolamine kinase EcKinase PF02958.20 EME71520.1 - 0.051 12.9 0.0 0.072 12.4 0.0 1.2 1 0 0 1 1 1 0 Ecdysteroid kinase LYTB PF02401.18 EME71521.1 - 3.8e-85 285.3 0.0 4.3e-85 285.2 0.0 1.0 1 0 0 1 1 1 1 LytB protein Ferrochelatase PF00762.19 EME71521.1 - 0.038 13.1 0.0 0.064 12.3 0.0 1.3 1 0 0 1 1 1 0 Ferrochelatase GCV_T PF01571.21 EME71523.1 - 2.2e-86 289.4 0.1 2.7e-86 289.1 0.1 1.1 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.11 EME71523.1 - 1.5e-17 63.2 0.7 7e-17 61.1 0.1 2.1 2 0 0 2 2 2 1 Glycine cleavage T-protein C-terminal barrel domain tRNA_edit PF04073.15 EME71523.1 - 0.071 13.2 0.1 0.18 11.9 0.1 1.7 1 1 0 1 1 1 0 Aminoacyl-tRNA editing domain GCV_H PF01597.19 EME71524.1 - 1.1e-38 131.9 0.1 1.2e-38 131.7 0.1 1.0 1 0 0 1 1 1 1 Glycine cleavage H-protein Biotin_lipoyl PF00364.22 EME71524.1 - 0.0047 16.7 0.4 0.0075 16.1 0.4 1.4 1 0 0 1 1 1 1 Biotin-requiring enzyme GP70 PF17429.2 EME71524.1 - 0.031 14.1 0.0 0.061 13.2 0.0 1.4 1 0 0 1 1 1 0 Gene product 70 GDC-P PF02347.16 EME71525.1 - 2.7e-113 379.0 0.0 3.1e-113 378.9 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage system P-protein Aminotran_5 PF00266.19 EME71525.1 - 2.7e-08 33.2 0.0 3.7e-08 32.7 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V SLH PF00395.20 EME71525.1 - 0.029 14.4 0.3 0.1 12.7 0.0 2.0 2 0 0 2 2 2 0 S-layer homology domain Aminotran_1_2 PF00155.21 EME71525.1 - 0.12 11.5 0.0 0.35 10.0 0.0 1.8 2 0 0 2 2 2 0 Aminotransferase class I and II Aminotran_5 PF00266.19 EME71526.1 - 2.3e-10 40.0 0.0 3.4e-10 39.4 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 EME71526.1 - 0.086 12.1 0.0 0.11 11.8 0.0 1.3 1 0 0 1 1 1 0 Beta-eliminating lyase EAL PF00563.20 EME71527.1 - 7.5e-62 209.0 0.0 1.4e-61 208.1 0.0 1.4 1 0 0 1 1 1 1 EAL domain PAS_4 PF08448.10 EME71527.1 - 0.0064 16.7 0.0 0.016 15.5 0.0 1.6 1 0 0 1 1 1 1 PAS fold PhageMin_Tail PF10145.9 EME71527.1 - 0.025 14.5 0.3 0.025 14.5 0.3 2.1 2 0 0 2 2 2 0 Phage-related minor tail protein PAS_3 PF08447.12 EME71527.1 - 0.029 14.7 0.0 0.074 13.3 0.0 1.7 1 0 0 1 1 1 0 PAS fold PAS PF00989.25 EME71527.1 - 0.046 13.7 0.0 0.09 12.8 0.0 1.5 1 0 0 1 1 1 0 PAS fold PAS_9 PF13426.7 EME71527.1 - 0.083 13.1 0.0 0.25 11.6 0.0 1.8 1 0 0 1 1 1 0 PAS domain UbiA PF01040.18 EME71528.1 - 3.4e-63 213.3 25.9 4.2e-63 213.0 25.9 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family Ost4 PF10215.9 EME71528.1 - 0.057 13.3 1.2 0.12 12.2 0.7 1.9 1 1 0 1 1 1 0 Oligosaccaryltransferase PrmA PF06325.13 EME71529.1 - 7.1e-12 45.3 0.8 1.5e-11 44.3 0.8 1.7 1 1 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 EME71529.1 - 1.2e-07 31.5 0.1 1.8e-07 30.9 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Met_10 PF02475.16 EME71529.1 - 8.4e-05 22.4 0.1 0.00011 22.0 0.1 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_25 PF13649.6 EME71529.1 - 0.00023 21.8 0.1 0.00038 21.1 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 EME71529.1 - 0.00027 20.7 0.0 0.00044 19.9 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_16 PF10294.9 EME71529.1 - 0.00032 20.5 0.0 0.00047 19.9 0.0 1.3 1 0 0 1 1 1 1 Lysine methyltransferase Methyltransf_23 PF13489.6 EME71529.1 - 0.0039 17.0 0.0 0.005 16.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 EME71529.1 - 0.056 13.2 0.0 0.069 12.9 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_15 PF09445.10 EME71529.1 - 0.063 12.8 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase DNA_methylase PF00145.17 EME71529.1 - 0.18 11.1 0.0 0.23 10.8 0.0 1.1 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase N6_N4_Mtase PF01555.18 EME71529.1 - 0.22 11.2 0.0 0.32 10.7 0.0 1.2 1 0 0 1 1 1 0 DNA methylase ABC2_membrane PF01061.24 EME71530.1 - 3.3e-11 43.0 20.6 4.6e-11 42.5 20.6 1.2 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 EME71530.1 - 1e-08 34.7 16.6 1.3e-08 34.4 16.6 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein CCB1 PF12046.8 EME71530.1 - 0.0029 17.0 4.6 0.0038 16.6 3.1 1.9 1 1 1 2 2 2 1 Cofactor assembly of complex C subunit B ABC_tran PF00005.27 EME71531.1 - 1.7e-29 103.1 0.0 2.4e-29 102.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 EME71531.1 - 9.5e-11 42.0 1.7 2.7e-07 30.7 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 EME71531.1 - 4.8e-05 22.9 0.0 0.0099 15.3 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain MukB PF04310.12 EME71531.1 - 0.01 15.6 1.3 0.019 14.8 1.3 1.3 1 0 0 1 1 1 0 MukB N-terminal AAA_23 PF13476.6 EME71531.1 - 0.02 15.4 0.3 0.033 14.7 0.2 1.4 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 EME71531.1 - 0.022 14.5 2.2 0.037 13.8 2.2 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain Zeta_toxin PF06414.12 EME71531.1 - 0.034 13.4 0.0 0.13 11.5 0.0 1.8 2 0 0 2 2 2 0 Zeta toxin SRP54 PF00448.22 EME71531.1 - 0.035 13.7 0.2 0.074 12.7 0.2 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_22 PF13401.6 EME71531.1 - 0.054 13.8 0.0 0.1 12.9 0.0 1.4 1 1 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.25 EME71531.1 - 0.087 12.5 0.4 0.1 12.2 0.4 1.5 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_15 PF13175.6 EME71531.1 - 0.097 12.4 0.0 0.33 10.6 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain AAA_28 PF13521.6 EME71531.1 - 0.12 12.6 0.8 0.64 10.3 0.1 2.2 2 1 0 2 2 2 0 AAA domain AAA_19 PF13245.6 EME71531.1 - 0.15 12.4 0.8 0.4 11.0 0.8 1.7 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 EME71531.1 - 0.16 12.2 0.1 0.94 9.8 0.1 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.6 EME71531.1 - 1.3 8.6 3.2 6.4 6.3 3.2 2.0 1 1 0 1 1 1 0 AAA domain EAL PF00563.20 EME71532.1 - 0.0032 17.0 0.0 0.0089 15.6 0.0 1.7 1 1 0 1 1 1 1 EAL domain Cdh1_DBD_1 PF18196.1 EME71532.1 - 0.11 12.8 0.1 0.3 11.4 0.1 1.7 1 0 0 1 1 1 0 Chromodomain helicase DNA-binding domain 1 Nrap_D6 PF17407.2 EME71532.1 - 0.14 12.4 0.0 17 5.6 0.0 2.4 2 0 0 2 2 2 0 Nrap protein domain 6 Mog1 PF04603.12 EME71532.1 - 0.17 12.2 0.4 0.35 11.2 0.1 1.6 2 0 0 2 2 2 0 Ran-interacting Mog1 protein Metallophos PF00149.28 EME71534.1 - 5.1e-13 50.0 0.0 7.8e-13 49.4 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 EME71534.1 - 0.073 13.3 0.0 0.18 12.0 0.0 1.6 1 1 0 1 1 1 0 Calcineurin-like phosphoesterase superfamily domain PfkB PF00294.24 EME71535.1 - 3.8e-42 144.6 1.9 5.7e-42 144.1 1.9 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase CTP_transf_like PF01467.26 EME71535.1 - 4.9e-14 52.7 0.0 1.1e-13 51.6 0.0 1.6 1 0 0 1 1 1 1 Cytidylyltransferase-like Phos_pyr_kin PF08543.12 EME71535.1 - 2.5e-12 46.7 0.5 5.2e-12 45.7 0.5 1.5 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Carb_kinase PF01256.17 EME71535.1 - 2.2e-05 24.0 2.4 3.5e-05 23.4 1.1 1.8 2 0 0 2 2 2 1 Carbohydrate kinase Pantoate_ligase PF02569.15 EME71535.1 - 0.0099 15.1 0.0 0.017 14.3 0.0 1.3 1 0 0 1 1 1 1 Pantoate-beta-alanine ligase QueF PF14489.6 EME71536.1 - 2.1e-32 111.1 0.0 2.8e-32 110.7 0.0 1.2 1 0 0 1 1 1 1 QueF-like protein QueF_N PF14819.6 EME71536.1 - 0.001 19.3 0.0 0.0014 18.9 0.0 1.2 1 0 0 1 1 1 1 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term DUF1730 PF08331.10 EME71537.1 - 6.9e-24 83.6 0.0 1.1e-23 82.9 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1730) Fer4_16 PF13484.6 EME71537.1 - 4.4e-19 69.2 3.5 7.2e-19 68.5 3.5 1.3 1 0 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 EME71537.1 - 1.5e-08 35.1 5.0 3.3e-08 34.0 5.0 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 EME71537.1 - 1.1e-07 31.8 4.4 0.00075 19.6 1.8 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 EME71537.1 - 1.4e-06 28.3 1.4 0.0015 18.7 0.2 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 EME71537.1 - 2.3e-05 24.0 14.2 3.7e-05 23.4 3.2 2.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_8 PF13183.6 EME71537.1 - 5e-05 23.7 0.1 0.0095 16.4 0.0 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 EME71537.1 - 0.00011 22.2 16.7 0.0013 18.7 3.8 2.5 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 EME71537.1 - 0.00012 22.5 0.9 0.0099 16.4 0.1 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_3 PF12798.7 EME71537.1 - 0.002 18.9 12.8 0.29 12.1 5.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 EME71537.1 - 0.0047 17.3 7.3 0.26 11.9 2.4 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 EME71537.1 - 0.0055 16.7 5.7 0.0055 16.7 5.7 2.8 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_20 PF14691.6 EME71537.1 - 0.037 13.8 0.5 0.037 13.8 0.5 1.8 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_21 PF14697.6 EME71537.1 - 0.055 13.6 9.9 0.53 10.5 1.3 2.4 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 EME71537.1 - 2.2 8.5 8.4 0.7 10.1 2.0 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 EME71537.1 - 3 8.5 9.5 2.1 8.9 3.6 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I HTH_3 PF01381.22 EME71538.1 - 2.7e-15 56.1 0.1 8.1e-15 54.6 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.6 EME71538.1 - 4e-12 46.3 0.3 1.3e-10 41.5 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_19 PF12844.7 EME71538.1 - 4e-10 39.6 0.0 5.9e-10 39.0 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 EME71538.1 - 0.0035 17.3 0.4 0.011 15.7 0.0 2.0 3 0 0 3 3 3 1 Crp-like helix-turn-helix domain HTH_26 PF13443.6 EME71538.1 - 0.0042 17.5 0.0 0.0092 16.4 0.0 1.5 2 0 0 2 2 2 1 Cro/C1-type HTH DNA-binding domain HTH_37 PF13744.6 EME71538.1 - 0.0042 17.0 0.5 0.026 14.5 0.0 2.1 2 1 0 2 2 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 EME71538.1 - 0.0087 15.7 1.4 7.2 6.4 0.0 3.6 4 0 0 4 4 4 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 EME71538.1 - 0.014 14.9 0.5 3.8 7.1 0.0 3.4 3 1 0 3 3 3 0 Sigma-70, region 4 Pou PF00157.17 EME71538.1 - 0.019 14.9 0.2 0.047 13.7 0.0 1.7 2 0 0 2 2 2 0 Pou domain - N-terminal to homeobox domain MqsA_antitoxin PF15731.5 EME71538.1 - 0.023 14.8 0.1 0.038 14.1 0.1 1.4 1 0 0 1 1 1 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA YdaS_antitoxin PF15943.5 EME71538.1 - 0.028 14.3 0.0 0.058 13.3 0.0 1.5 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT PCuAC PF04314.13 EME71539.1 - 1.5e-33 114.9 0.0 2.2e-33 114.3 0.0 1.3 1 0 0 1 1 1 1 Copper chaperone PCu(A)C DUF11 PF01345.18 EME71539.1 - 0.06 13.7 0.0 0.24 11.7 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function DUF11 Pyrid_oxidase_2 PF13883.6 EME71540.1 - 3.9e-10 40.0 0.0 5.4e-10 39.5 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Putative_PNPOx PF01243.20 EME71540.1 - 1.7e-07 31.3 0.1 3.5e-07 30.3 0.1 1.6 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase PEPCK_GTP PF00821.18 EME71541.1 - 1.1e-166 554.1 0.1 1.4e-166 553.7 0.1 1.1 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain PEPCK_N PF17297.2 EME71541.1 - 9.1e-105 349.1 0.0 1.2e-104 348.7 0.0 1.1 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxykinase N-terminal domain TonB_dep_Rec PF00593.24 EME71543.1 - 1.3e-23 84.6 14.6 1.6e-23 84.3 14.6 1.1 1 0 0 1 1 1 1 TonB dependent receptor Plug PF07715.15 EME71543.1 - 3.9e-23 82.1 0.2 1.7e-22 80.0 0.1 2.2 2 0 0 2 2 2 1 TonB-dependent Receptor Plug Domain DUF4198 PF10670.9 EME71544.1 - 1e-20 75.0 0.0 1.3e-20 74.7 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4198) bMG3 PF11974.8 EME71544.1 - 0.008 16.2 0.0 0.015 15.4 0.0 1.5 1 0 0 1 1 1 1 Bacterial alpha-2-macroglobulin MG3 domain CarboxypepD_reg PF13620.6 EME71544.1 - 0.026 14.8 0.1 0.094 13.0 0.0 2.0 3 0 0 3 3 3 0 Carboxypeptidase regulatory-like domain GST_N_3 PF13417.6 EME71545.1 - 2.3e-17 63.2 0.0 6.7e-17 61.7 0.0 1.7 2 0 0 2 2 2 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.6 EME71545.1 - 3.2e-16 59.4 0.0 5.1e-16 58.7 0.0 1.3 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N PF02798.20 EME71545.1 - 6.8e-09 35.9 0.0 1.4e-08 35.0 0.0 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_C_2 PF13410.6 EME71545.1 - 7.8e-05 22.6 2.0 0.00014 21.8 2.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain Cupin_5 PF06172.11 EME71546.1 - 2.6e-48 163.8 0.0 2.9e-48 163.6 0.0 1.0 1 0 0 1 1 1 1 Cupin superfamily (DUF985) Cupredoxin_1 PF13473.6 EME71547.1 - 0.0074 16.4 0.0 0.047 13.8 0.0 1.9 1 1 0 1 1 1 1 Cupredoxin-like domain HAD_2 PF13419.6 EME71548.1 - 9.4e-28 97.5 0.0 1.1e-27 97.2 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 EME71548.1 - 3.1e-15 57.0 0.1 1.4e-14 54.9 0.1 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 EME71548.1 - 3e-07 31.0 0.0 3.7e-07 30.7 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 EME71548.1 - 0.0017 18.4 0.0 0.0039 17.2 0.0 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like UDG PF03167.19 EME71549.1 - 9.1e-23 81.0 0.0 1.1e-22 80.6 0.0 1.0 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily Radical_SAM PF04055.21 EME71550.1 - 1.1e-14 55.2 0.0 2.9e-13 50.6 0.0 2.2 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.19 EME71550.1 - 2.6e-11 43.6 0.1 1.4e-10 41.3 0.0 2.0 2 0 0 2 2 2 1 B12 binding domain Lipase_GDSL_2 PF13472.6 EME71550.1 - 0.066 13.6 0.1 0.61 10.5 0.0 2.3 2 0 0 2 2 2 0 GDSL-like Lipase/Acylhydrolase family NUDIX PF00293.28 EME71551.1 - 1.3e-11 44.6 0.1 2e-11 44.1 0.1 1.3 1 0 0 1 1 1 1 NUDIX domain dTDP_sugar_isom PF00908.17 EME71552.1 - 2.4e-46 157.5 0.0 2.7e-46 157.3 0.0 1.0 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase GDP_Man_Dehyd PF16363.5 EME71553.1 - 9.1e-70 235.7 0.0 1.1e-69 235.4 0.0 1.1 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 EME71553.1 - 6.2e-49 166.6 0.0 7.4e-49 166.4 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.15 EME71553.1 - 3e-07 29.9 0.0 4.8e-07 29.2 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 EME71553.1 - 2.2e-06 27.0 0.0 0.00061 19.0 0.0 2.7 2 1 0 2 2 2 1 Male sterility protein RmlD_sub_bind PF04321.17 EME71553.1 - 8.2e-05 21.8 0.0 0.00012 21.3 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 EME71553.1 - 0.00067 18.8 0.0 0.00085 18.4 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Phos_pyr_kin PF08543.12 EME71553.1 - 0.034 13.5 0.0 0.051 13.0 0.0 1.2 1 0 0 1 1 1 0 Phosphomethylpyrimidine kinase DEP PF00610.21 EME71553.1 - 0.066 13.3 0.0 17 5.6 0.0 2.5 2 0 0 2 2 2 0 Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP) NTP_transferase PF00483.23 EME71554.1 - 4.2e-22 78.9 0.0 5e-22 78.7 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 EME71554.1 - 1e-11 45.5 0.4 1.2e-11 45.3 0.4 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain GHMP_kinases_C PF08544.13 EME71555.1 - 1.5e-10 41.3 0.1 4.3e-10 39.8 0.1 1.9 1 1 0 1 1 1 1 GHMP kinases C terminal GHMP_kinases_N PF00288.26 EME71555.1 - 2.3e-10 40.5 0.6 5.5e-10 39.3 0.6 1.7 1 0 0 1 1 1 1 GHMP kinases N terminal domain GalKase_gal_bdg PF10509.9 EME71555.1 - 0.089 12.4 0.1 0.25 10.9 0.1 1.7 1 1 0 1 1 1 0 Galactokinase galactose-binding signature Glyco_trans_1_2 PF13524.6 EME71556.1 - 0.00096 19.5 0.0 0.0036 17.7 0.0 2.0 1 0 0 1 1 1 1 Glycosyl transferases group 1 Methyltransf_25 PF13649.6 EME71557.1 - 0.021 15.5 0.0 0.095 13.4 0.0 2.1 2 0 0 2 2 2 0 Methyltransferase domain K-box PF01486.17 EME71557.1 - 0.037 14.2 0.0 0.72 10.1 0.0 2.1 2 0 0 2 2 2 0 K-box region Prot_ATP_OB_N PF17758.1 EME71557.1 - 0.19 11.4 0.1 0.54 9.9 0.1 1.8 1 0 0 1 1 1 0 Proteasomal ATPase OB N-terminal domain Radical_SAM PF04055.21 EME71558.1 - 8.4e-10 39.3 0.0 5.8e-09 36.5 0.0 2.2 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.19 EME71558.1 - 1.7e-07 31.3 0.0 3.4e-07 30.3 0.0 1.5 1 0 0 1 1 1 1 B12 binding domain Glyco_trans_4_4 PF13579.6 EME71558.1 - 0.67 10.4 4.9 0.32 11.4 0.4 2.3 2 0 0 2 2 2 0 Glycosyl transferase 4-like domain Transket_pyr PF02779.24 EME71559.1 - 2.6e-21 76.1 0.0 3.8e-21 75.5 0.0 1.2 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 EME71559.1 - 5e-21 74.9 0.0 1.4e-20 73.4 0.0 1.8 2 0 0 2 2 2 1 Transketolase, C-terminal domain PFOR_II PF17147.4 EME71559.1 - 0.0013 19.0 0.0 0.043 14.1 0.0 2.3 2 0 0 2 2 2 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_N PF00456.21 EME71560.1 - 2.6e-37 128.5 0.0 3.9e-37 127.9 0.0 1.2 1 0 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain E1_dh PF00676.20 EME71560.1 - 1.4e-10 40.6 0.0 2e-10 40.2 0.0 1.1 1 0 0 1 1 1 1 Dehydrogenase E1 component DXP_synthase_N PF13292.6 EME71560.1 - 5.6e-09 35.6 0.3 0.0011 18.3 0.1 3.0 2 1 1 3 3 3 2 1-deoxy-D-xylulose-5-phosphate synthase TPP_enzyme_C PF02775.21 EME71560.1 - 0.00012 21.9 0.2 0.00065 19.5 0.2 2.1 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain XFP_N PF09364.10 EME71560.1 - 0.00021 20.2 0.0 0.00029 19.8 0.0 1.1 1 0 0 1 1 1 1 XFP N-terminal domain CoA_transf_3 PF02515.17 EME71561.1 - 1.6e-135 452.0 0.1 1.8e-135 451.8 0.1 1.0 1 0 0 1 1 1 1 CoA-transferase family III SAM_4 PF18017.1 EME71561.1 - 0.12 12.4 0.0 0.24 11.4 0.0 1.5 1 0 0 1 1 1 0 SAM domain (Sterile alpha motif) Alpha-E PF04168.12 EME71562.1 - 8.7e-78 262.1 3.4 9.7e-78 261.9 3.4 1.0 1 0 0 1 1 1 1 A predicted alpha-helical domain with a conserved ER motif. L27_1 PF09058.10 EME71562.1 - 0.095 12.7 0.1 0.24 11.4 0.1 1.6 1 0 0 1 1 1 0 L27_1 CP_ATPgrasp_2 PF14403.6 EME71563.1 - 6.8e-155 515.6 0.0 8.1e-155 515.4 0.0 1.1 1 0 0 1 1 1 1 Circularly permuted ATP-grasp type 2 CP_ATPgrasp_1 PF04174.13 EME71563.1 - 2.3e-146 487.1 0.0 3e-146 486.7 0.0 1.2 1 0 0 1 1 1 1 A circularly permuted ATPgrasp DUF2126 PF09899.9 EME71564.1 - 0 1313.1 0.0 0 1312.8 0.0 1.0 1 0 0 1 1 1 1 Putative amidoligase enzyme (DUF2126) Bact_transglu_N PF08379.10 EME71564.1 - 1.3e-29 102.9 0.3 3.6e-29 101.5 0.3 1.9 1 0 0 1 1 1 1 Bacterial transglutaminase-like N-terminal region Transglut_core PF01841.19 EME71564.1 - 1.3e-19 70.7 0.0 1.2e-18 67.6 0.0 2.3 2 1 0 2 2 2 1 Transglutaminase-like superfamily DUF553 PF04473.12 EME71564.1 - 0.12 11.9 0.0 0.21 11.1 0.0 1.3 1 0 0 1 1 1 0 Transglutaminase-like domain CP_ATPgrasp_2 PF14403.6 EME71565.1 - 1.9e-150 501.0 0.0 3.1e-150 500.3 0.0 1.3 1 0 0 1 1 1 1 Circularly permuted ATP-grasp type 2 CP_ATPgrasp_1 PF04174.13 EME71565.1 - 2.3e-110 368.7 0.0 3.2e-110 368.3 0.0 1.2 1 0 0 1 1 1 1 A circularly permuted ATPgrasp Alpha-E PF04168.12 EME71565.1 - 5.3e-63 213.5 3.3 7.5e-63 213.0 3.3 1.2 1 0 0 1 1 1 1 A predicted alpha-helical domain with a conserved ER motif. Bact_transglu_N PF08379.10 EME71566.1 - 3.4e-23 82.3 1.0 6.7e-23 81.4 1.0 1.5 1 0 0 1 1 1 1 Bacterial transglutaminase-like N-terminal region Transglut_core PF01841.19 EME71566.1 - 1.4e-20 73.8 0.0 2.3e-20 73.1 0.0 1.3 1 0 0 1 1 1 1 Transglutaminase-like superfamily DUF553 PF04473.12 EME71566.1 - 0.093 12.3 0.0 0.15 11.6 0.0 1.2 1 0 0 1 1 1 0 Transglutaminase-like domain TonB_2 PF13103.6 EME71566.1 - 0.11 12.7 0.0 0.32 11.2 0.0 1.7 2 0 0 2 2 2 0 TonB C terminal LysR_substrate PF03466.20 EME71568.1 - 6.3e-47 159.7 5.5 9.1e-47 159.1 5.5 1.2 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 EME71568.1 - 2.3e-17 62.7 2.2 4.4e-17 61.8 2.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_IclR PF09339.10 EME71568.1 - 0.00097 18.9 1.2 0.0026 17.5 0.8 2.0 1 1 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.7 EME71568.1 - 0.0093 16.0 2.4 0.016 15.3 0.3 2.4 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_30 PF13556.6 EME71568.1 - 0.016 15.0 0.1 0.038 13.8 0.1 1.6 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain MarR_2 PF12802.7 EME71568.1 - 0.019 14.8 0.1 0.085 12.8 0.1 2.1 1 0 0 1 1 1 0 MarR family HTH_23 PF13384.6 EME71568.1 - 0.13 12.1 0.0 0.32 10.9 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain Oxidored_FMN PF00724.20 EME71569.1 - 2.9e-75 253.7 0.0 4.2e-75 253.2 0.0 1.2 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family DoxX PF07681.12 EME71570.1 - 1.5e-15 57.5 16.5 2e-15 57.1 15.8 1.6 1 1 0 1 1 1 1 DoxX DoxD PF04173.13 EME71570.1 - 0.00034 20.6 1.5 0.00049 20.0 1.5 1.2 1 0 0 1 1 1 1 TQO small subunit DoxD DoxX_2 PF13564.6 EME71570.1 - 2.9 8.1 16.9 2.9 8.1 15.2 2.0 1 1 2 3 3 3 0 DoxX-like family tRNA-synt_2b PF00587.25 EME71571.1 - 6.5e-13 49.0 0.0 1.1e-12 48.3 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) ProRS-C_1 PF09180.11 EME71571.1 - 4e-11 43.0 0.0 9.2e-11 41.8 0.0 1.6 1 0 0 1 1 1 1 Prolyl-tRNA synthetase, C-terminal HGTP_anticodon PF03129.20 EME71571.1 - 5e-05 23.4 0.0 0.00015 21.8 0.0 1.8 1 0 0 1 1 1 1 Anticodon binding domain Glycos_transf_1 PF00534.20 EME71572.1 - 3.9e-09 36.3 0.0 5.8e-09 35.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 EME71572.1 - 2.8e-06 27.8 0.0 4.4e-06 27.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 STAS_2 PF13466.6 EME71573.1 - 3.2e-14 53.0 0.1 3.7e-14 52.8 0.1 1.1 1 0 0 1 1 1 1 STAS domain STAS PF01740.21 EME71573.1 - 2.9e-08 33.4 0.0 3e-08 33.3 0.0 1.0 1 0 0 1 1 1 1 STAS domain SpoIIAA-like PF11964.8 EME71573.1 - 0.14 13.2 0.1 0.17 12.9 0.1 1.2 1 0 0 1 1 1 0 SpoIIAA-like SpoIIE PF07228.12 EME71574.1 - 4e-32 111.7 0.0 6.3e-32 111.1 0.0 1.3 1 0 0 1 1 1 1 Stage II sporulation protein E (SpoIIE) Response_reg PF00072.24 EME71574.1 - 6.2e-28 97.2 0.0 1e-27 96.5 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c_2 PF13581.6 EME71574.1 - 8.3e-07 29.0 0.1 1.1e-05 25.4 0.1 2.5 1 1 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c PF02518.26 EME71574.1 - 0.085 13.4 0.0 0.22 12.1 0.0 1.7 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MCPsignal PF00015.21 EME71575.1 - 6e-35 120.6 36.1 2.2e-33 115.5 20.8 3.6 2 1 2 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain CZB PF13682.6 EME71575.1 - 3.9e-14 52.8 0.3 7.9e-14 51.8 0.3 1.6 1 0 0 1 1 1 1 Chemoreceptor zinc-binding domain DUF948 PF06103.11 EME71575.1 - 4.5e-05 23.6 24.0 0.0064 16.7 3.8 4.6 3 2 2 5 5 5 2 Bacterial protein of unknown function (DUF948) D5_N PF08706.11 EME71575.1 - 0.0071 16.6 0.3 0.021 15.1 0.3 1.8 1 0 0 1 1 1 1 D5 N terminal like DHR10 PF18595.1 EME71575.1 - 0.03 14.4 1.5 0.03 14.4 1.5 3.9 2 1 1 3 3 3 0 Designed helical repeat protein 10 domain Serine_rich PF08824.10 EME71575.1 - 0.13 12.3 9.7 0.62 10.1 2.6 3.4 1 1 4 5 5 5 0 Serine rich protein interaction domain DUF3739 PF12545.8 EME71575.1 - 0.15 12.5 4.6 0.32 11.5 3.8 2.0 1 1 0 1 1 1 0 Filamentous haemagglutinin family outer membrane protein Laminin_II PF06009.12 EME71575.1 - 0.22 11.5 21.1 1.4 8.9 3.3 4.1 2 2 2 4 4 4 0 Laminin Domain II Snf7 PF03357.21 EME71575.1 - 0.34 10.5 11.7 0.12 12.0 6.9 2.6 1 1 1 2 2 2 0 Snf7 Fib_alpha PF08702.10 EME71575.1 - 0.44 10.7 12.6 0.98 9.6 2.4 2.8 2 1 1 3 3 3 0 Fibrinogen alpha/beta chain family NPV_P10 PF05531.12 EME71575.1 - 0.85 10.1 17.9 6.3 7.3 0.0 5.1 4 1 1 5 5 5 0 Nucleopolyhedrovirus P10 protein Sec34 PF04136.15 EME71575.1 - 1 9.2 10.7 12 5.8 0.3 4.5 2 2 2 4 4 4 0 Sec34-like family DUF1664 PF07889.12 EME71575.1 - 1.8 8.6 18.5 32 4.6 0.1 4.3 2 2 2 4 4 4 0 Protein of unknown function (DUF1664) Bep_C_terminal PF17841.1 EME71575.1 - 5 7.4 7.0 12 6.2 0.3 3.9 4 0 0 4 4 3 0 BID domain of Bartonella effector protein (Bep) BLOC1_2 PF10046.9 EME71575.1 - 5 7.5 14.6 2.9 8.2 0.2 4.9 3 2 2 6 6 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 TPR_MLP1_2 PF07926.12 EME71575.1 - 5.6 7.0 16.6 2.1 8.4 2.7 3.1 3 0 0 3 3 3 0 TPR/MLP1/MLP2-like protein Vps51 PF08700.11 EME71575.1 - 5.9 7.0 7.1 12 6.1 0.2 3.8 5 1 0 5 5 4 0 Vps51/Vps67 TMPIT PF07851.13 EME71575.1 - 7.9 5.6 8.0 6.1 6.0 1.0 2.5 1 1 0 2 2 2 0 TMPIT-like protein Sec20 PF03908.13 EME71575.1 - 8.3 6.4 13.3 6.5 6.7 0.7 3.6 2 1 1 3 3 3 0 Sec20 WXG100 PF06013.12 EME71575.1 - 9.8 6.5 19.9 6.8 7.0 1.3 5.5 3 1 4 7 7 6 0 Proteins of 100 residues with WXG DUF520 PF04461.13 EME71576.1 - 6.6e-61 205.1 6.4 7.6e-61 204.9 6.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF520) DUF2120 PF09893.9 EME71576.1 - 0.039 14.1 0.9 0.054 13.6 0.9 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2120) DUF1948 PF09185.10 EME71576.1 - 0.047 13.6 0.2 0.064 13.1 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1948) GSHPx PF00255.19 EME71579.1 - 1.2e-31 108.4 0.0 1.6e-31 108.1 0.0 1.1 1 0 0 1 1 1 1 Glutathione peroxidase AhpC-TSA PF00578.21 EME71579.1 - 0.046 13.6 0.0 0.063 13.2 0.0 1.2 1 0 0 1 1 1 0 AhpC/TSA family HATPase_c PF02518.26 EME71580.1 - 3.6e-25 88.7 0.0 6.8e-25 87.8 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 EME71580.1 - 2e-23 82.7 0.6 1.4e-16 60.7 0.0 2.7 2 0 0 2 2 2 2 PAS fold PAS PF00989.25 EME71580.1 - 5.1e-14 52.2 0.0 3.2e-08 33.6 0.0 2.6 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.7 EME71580.1 - 1.1e-13 50.8 0.3 3.8e-06 26.8 0.0 2.8 2 0 0 2 2 2 2 PAS domain PAS_9 PF13426.7 EME71580.1 - 4.2e-13 49.4 0.0 1.7e-06 28.2 0.0 2.5 2 0 0 2 2 2 2 PAS domain HisKA PF00512.25 EME71580.1 - 2.4e-12 46.7 0.3 2.4e-12 46.7 0.3 2.4 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_3 PF08447.12 EME71580.1 - 7.8e-10 38.9 0.0 2.6e-07 30.9 0.0 2.7 2 0 0 2 2 2 1 PAS fold HATPase_c_5 PF14501.6 EME71580.1 - 0.0024 17.7 0.0 0.0048 16.8 0.0 1.4 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.6 EME71580.1 - 0.022 14.6 0.0 0.038 13.8 0.0 1.3 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 EME71580.1 - 0.044 13.8 0.0 0.11 12.4 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain HD_5 PF13487.6 EME71581.1 - 2.3e-20 72.6 0.5 3.8e-19 68.7 0.1 2.7 2 0 0 2 2 2 1 HD domain GAF PF01590.26 EME71581.1 - 3.5e-12 47.1 0.0 7.4e-12 46.0 0.0 1.6 1 0 0 1 1 1 1 GAF domain HD PF01966.22 EME71581.1 - 8.1e-09 35.7 0.1 0.00018 21.7 0.0 2.6 2 0 0 2 2 2 2 HD domain GAF_2 PF13185.6 EME71581.1 - 1.3e-08 35.3 0.0 4.8e-08 33.4 0.0 2.0 1 0 0 1 1 1 1 GAF domain dCache_1 PF02743.18 EME71581.1 - 1.6e-05 24.8 0.1 5.3e-05 23.1 0.0 2.0 3 0 0 3 3 3 1 Cache domain GAF_3 PF13492.6 EME71581.1 - 0.00011 22.5 0.2 0.0049 17.2 0.0 3.4 1 1 1 2 2 2 1 GAF domain HAMP PF00672.25 EME71581.1 - 0.0012 19.2 0.1 0.0032 17.8 0.1 1.8 1 0 0 1 1 1 1 HAMP domain NEMO PF11577.8 EME71581.1 - 0.037 14.0 0.2 0.11 12.5 0.0 1.9 2 0 0 2 2 2 0 NF-kappa-B essential modulator NEMO Pox_I6 PF04595.13 EME71581.1 - 0.16 10.9 0.0 0.28 10.1 0.0 1.3 1 0 0 1 1 1 0 Poxvirus I6-like family ABC2_membrane PF01061.24 EME71582.1 - 1.8e-31 109.2 23.8 1.8e-31 109.2 23.8 1.7 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 EME71582.1 - 1.8e-16 60.2 28.5 2.3e-16 59.9 28.5 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 EME71582.1 - 3e-13 49.7 22.0 8.7e-13 48.2 22.0 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 EME71582.1 - 0.00089 19.3 15.5 0.0064 16.5 15.5 2.1 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 EME71582.1 - 0.0012 18.5 11.0 0.0016 18.0 11.0 1.4 1 0 0 1 1 1 1 ABC-2 family transporter protein BphX PF06139.12 EME71582.1 - 0.25 11.3 6.6 0.13 12.2 3.7 1.9 1 1 1 2 2 2 0 BphX-like ABC_tran PF00005.27 EME71583.1 - 1.1e-25 90.8 0.0 1.7e-25 90.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 EME71583.1 - 1.4e-09 38.3 0.3 0.0011 18.9 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 EME71583.1 - 0.0003 20.3 0.0 0.13 11.7 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 EME71583.1 - 0.00059 20.4 0.0 0.00091 19.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.6 EME71583.1 - 0.0012 18.5 1.8 0.014 15.0 0.3 2.8 2 1 0 2 2 2 1 AAA domain AAA_29 PF13555.6 EME71583.1 - 0.0017 18.1 0.1 0.0033 17.1 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 EME71583.1 - 0.0086 15.8 2.2 1.2 8.8 0.0 2.4 2 1 0 2 2 2 2 AAA domain AAA PF00004.29 EME71583.1 - 0.013 15.9 0.0 0.045 14.2 0.0 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 EME71583.1 - 0.028 15.0 0.1 0.17 12.5 0.1 2.3 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.6 EME71583.1 - 0.045 13.4 0.0 0.31 10.7 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain AAA_16 PF13191.6 EME71583.1 - 0.047 14.1 0.4 0.12 12.8 0.1 1.8 2 0 0 2 2 2 0 AAA ATPase domain AAA_27 PF13514.6 EME71583.1 - 0.068 12.8 0.0 0.18 11.4 0.0 1.6 2 0 0 2 2 2 0 AAA domain DUF4162 PF13732.6 EME71583.1 - 0.069 13.9 0.0 0.12 13.1 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4162) AAA_33 PF13671.6 EME71583.1 - 0.079 13.1 0.0 0.13 12.4 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 EME71583.1 - 0.091 13.0 0.1 0.89 9.8 0.0 2.2 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.12 EME71583.1 - 0.092 12.0 0.0 0.18 11.1 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin T2SSE PF00437.20 EME71583.1 - 0.096 11.7 0.0 0.19 10.8 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein RsgA_GTPase PF03193.16 EME71583.1 - 0.15 12.0 0.0 0.3 11.0 0.0 1.6 1 0 0 1 1 1 0 RsgA GTPase AAA_5 PF07728.14 EME71583.1 - 0.15 12.0 0.3 0.61 10.1 0.1 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) ATPase PF06745.13 EME71583.1 - 0.16 11.3 0.0 1.5 8.1 0.0 2.1 2 0 0 2 2 2 0 KaiC GATase_3 PF07685.14 EME71584.1 - 1.7e-31 109.4 0.0 2.4e-31 108.9 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.23 EME71584.1 - 2.9e-17 62.9 0.0 5.3e-17 62.1 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 EME71584.1 - 5.3e-16 59.0 0.0 1.5e-10 41.3 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.6 EME71584.1 - 0.039 13.5 0.9 0.085 12.4 0.1 1.9 2 0 0 2 2 2 0 AAA domain MobB PF03205.14 EME71584.1 - 0.071 13.0 0.0 0.28 11.1 0.0 2.0 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Glycos_trans_3N PF02885.17 EME71585.1 - 5.6e-15 54.9 2.0 4.9e-13 48.7 0.0 2.5 2 0 0 2 2 2 2 Glycosyl transferase family, helical bundle domain Glycos_transf_3 PF00591.21 EME71585.1 - 3.2e-09 36.7 0.2 5.6e-09 36.0 0.2 1.5 1 1 0 1 1 1 1 Glycosyl transferase family, a/b domain Methyltransf_25 PF13649.6 EME71586.1 - 2.6e-20 72.9 0.0 4.4e-20 72.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 EME71586.1 - 2.7e-15 56.9 0.0 4.2e-15 56.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 EME71586.1 - 9.2e-15 55.1 0.0 1.4e-14 54.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 EME71586.1 - 2.8e-12 46.7 0.0 4e-12 46.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 EME71586.1 - 1.5e-09 37.7 0.0 2e-09 37.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_23 PF13489.6 EME71586.1 - 1.9e-09 37.6 0.0 2.4e-09 37.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 EME71586.1 - 8.9e-08 31.7 0.0 1.2e-07 31.3 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family CMAS PF02353.20 EME71586.1 - 9.5e-06 25.1 0.0 1.2e-05 24.7 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PrmA PF06325.13 EME71586.1 - 0.00011 21.7 0.0 0.00014 21.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_2 PF00891.18 EME71586.1 - 0.0002 20.7 0.0 0.00029 20.2 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase domain Methyltransf_18 PF12847.7 EME71586.1 - 0.00089 19.2 0.0 0.0022 17.9 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_16 PF10294.9 EME71586.1 - 0.0018 18.1 0.0 0.0029 17.3 0.0 1.3 1 0 0 1 1 1 1 Lysine methyltransferase Methyltransf_PK PF05891.12 EME71586.1 - 0.014 14.9 0.0 0.02 14.4 0.0 1.1 1 0 0 1 1 1 0 AdoMet dependent proline di-methyltransferase FtsJ PF01728.19 EME71586.1 - 0.043 13.9 0.0 0.069 13.3 0.0 1.3 1 1 0 1 1 1 0 FtsJ-like methyltransferase DUF938 PF06080.12 EME71586.1 - 0.044 13.6 0.0 0.072 12.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF938) PCMT PF01135.19 EME71586.1 - 0.11 12.2 0.0 0.3 10.8 0.0 1.7 1 1 1 2 2 2 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) GerE PF00196.19 EME71588.1 - 2.7e-19 68.5 0.1 3e-19 68.3 0.1 1.0 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 EME71588.1 - 6.4e-10 38.5 0.0 9.7e-10 38.0 0.0 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 EME71588.1 - 1e-05 24.9 0.0 1.6e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.6 EME71588.1 - 4.6e-05 22.9 0.0 7.9e-05 22.1 0.0 1.5 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.6 EME71588.1 - 0.00077 19.2 0.3 0.0017 18.1 0.1 1.7 2 0 0 2 2 2 1 Homeodomain-like domain HTH_20 PF12840.7 EME71588.1 - 0.0013 18.8 0.0 0.0023 17.9 0.0 1.5 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_10 PF04967.12 EME71588.1 - 0.0019 18.0 0.1 0.028 14.2 0.0 2.1 1 1 1 2 2 2 1 HTH DNA binding domain HTH_28 PF13518.6 EME71588.1 - 0.0037 17.4 0.4 0.0076 16.4 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_38 PF13936.6 EME71588.1 - 0.012 15.4 0.2 0.02 14.6 0.2 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Flu_M1 PF00598.19 EME71588.1 - 0.018 14.6 0.0 0.018 14.5 0.0 1.1 1 0 0 1 1 1 0 Influenza Matrix protein (M1) HTH_40 PF14493.6 EME71588.1 - 0.026 15.0 0.0 0.029 14.8 0.0 1.1 1 0 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.7 EME71588.1 - 0.049 13.5 0.0 0.069 13.0 0.0 1.4 1 1 0 1 1 1 0 MarR family HTH_Tnp_ISL3 PF13542.6 EME71588.1 - 0.11 12.0 0.0 0.19 11.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 Guanylate_cyc PF00211.20 EME71589.1 - 4.5e-26 91.6 0.0 7.2e-26 90.9 0.0 1.3 1 0 0 1 1 1 1 Adenylate and Guanylate cyclase catalytic domain dCache_1 PF02743.18 EME71589.1 - 8.8e-23 81.4 0.0 3e-22 79.6 0.0 1.8 1 1 0 1 1 1 1 Cache domain sCache_3_2 PF17203.4 EME71589.1 - 0.0003 20.9 0.1 1.2 9.2 0.0 2.6 1 1 1 2 2 2 2 Single cache domain 3 HAMP PF00672.25 EME71589.1 - 0.009 16.4 0.6 0.047 14.1 0.2 2.4 2 0 0 2 2 2 1 HAMP domain TPR_2 PF07719.17 EME71589.1 - 0.03 14.4 0.1 0.071 13.3 0.1 1.6 1 0 0 1 1 1 0 Tetratricopeptide repeat TPR_7 PF13176.6 EME71589.1 - 0.11 12.5 0.1 0.31 11.2 0.1 1.8 1 0 0 1 1 1 0 Tetratricopeptide repeat EAL PF00563.20 EME71590.1 - 8e-71 238.3 0.0 1.9e-70 237.1 0.0 1.7 1 0 0 1 1 1 1 EAL domain GGDEF PF00990.21 EME71590.1 - 2.2e-54 183.5 0.1 4.7e-54 182.5 0.1 1.6 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain PAS_9 PF13426.7 EME71590.1 - 1.3e-36 124.9 0.0 3.4e-15 56.2 0.0 3.5 3 0 0 3 3 3 3 PAS domain PAS_4 PF08448.10 EME71590.1 - 1.9e-35 121.4 7.1 2.8e-16 59.7 0.4 4.2 4 0 0 4 4 4 3 PAS fold PAS PF00989.25 EME71590.1 - 2.8e-35 120.7 0.1 1.2e-15 57.5 0.0 3.7 3 1 0 3 3 3 3 PAS fold PAS_8 PF13188.7 EME71590.1 - 7.7e-20 70.5 0.1 7.2e-06 25.9 0.0 4.1 4 0 0 4 4 4 3 PAS domain PAS_3 PF08447.12 EME71590.1 - 9.1e-18 64.3 0.0 1.1e-09 38.5 0.0 3.3 3 0 0 3 3 3 2 PAS fold GhoS PF11080.8 EME71590.1 - 0.13 12.3 0.1 4.5 7.3 0.0 3.0 3 0 0 3 3 3 0 Endoribonuclease GhoS RES PF08808.11 EME71591.1 - 0.02 14.8 0.7 0.02 14.8 0.7 2.5 2 1 1 3 3 3 0 RES domain HD_5 PF13487.6 EME71591.1 - 0.095 13.0 0.0 0.22 11.8 0.0 1.6 1 0 0 1 1 1 0 HD domain PAS_7 PF12860.7 EME71592.1 - 8.5e-43 145.2 0.2 2.8e-41 140.3 0.0 3.2 4 0 0 4 4 4 1 PAS fold HATPase_c PF02518.26 EME71592.1 - 9.1e-27 93.8 0.0 1.7e-26 92.9 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 EME71592.1 - 2.8e-21 75.7 0.0 1.3e-17 63.9 0.0 2.6 2 0 0 2 2 2 2 PAS domain PAS PF00989.25 EME71592.1 - 5.5e-18 65.0 0.0 7.1e-13 48.5 0.0 2.6 2 0 0 2 2 2 2 PAS fold HisKA PF00512.25 EME71592.1 - 6.6e-18 64.5 2.4 2e-17 63.0 0.1 3.1 4 0 0 4 4 4 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.10 EME71592.1 - 4.3e-16 59.1 0.1 3e-10 40.3 0.0 3.3 3 0 0 3 3 3 2 PAS fold dCache_1 PF02743.18 EME71592.1 - 6.8e-15 55.5 0.0 1.4e-14 54.5 0.0 1.5 1 0 0 1 1 1 1 Cache domain PAS_8 PF13188.7 EME71592.1 - 1.1e-14 54.1 0.0 2.3e-06 27.5 0.0 2.8 2 0 0 2 2 2 2 PAS domain PAS_3 PF08447.12 EME71592.1 - 4.8e-12 46.0 0.0 1.1e-11 44.8 0.0 1.6 1 0 0 1 1 1 1 PAS fold HATPase_c_2 PF13581.6 EME71592.1 - 0.058 13.3 0.0 0.14 12.1 0.0 1.7 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain DUF4455 PF14643.6 EME71592.1 - 0.3 9.7 0.0 0.48 9.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4455) HATPase_c PF02518.26 EME71593.1 - 2e-20 73.4 0.0 3e-20 72.8 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 EME71593.1 - 7.7e-19 67.5 0.3 4.1e-18 65.2 0.0 2.2 2 1 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.6 EME71593.1 - 0.076 13.0 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain SID-1_RNA_chan PF13965.6 EME71593.1 - 0.15 10.4 5.1 0.19 10.1 5.1 1.1 1 0 0 1 1 1 0 dsRNA-gated channel SID-1 LapA_dom PF06305.11 EME71593.1 - 0.88 9.4 4.2 5.6 6.9 0.1 3.0 2 0 0 2 2 2 0 Lipopolysaccharide assembly protein A domain OTCace_N PF02729.21 EME71594.1 - 3e-43 147.4 0.0 4.6e-43 146.8 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 EME71594.1 - 3.2e-22 79.3 0.0 1.2e-21 77.5 0.0 1.9 1 1 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Fer2_4 PF13510.6 EME71594.1 - 0.023 14.7 0.0 0.089 12.9 0.0 1.9 2 0 0 2 2 2 0 2Fe-2S iron-sulfur cluster binding domain DeoC PF01791.9 EME71594.1 - 0.045 13.4 0.0 0.067 12.8 0.0 1.3 1 0 0 1 1 1 0 DeoC/LacD family aldolase Amidohydro_1 PF01979.20 EME71595.1 - 8e-22 78.0 0.4 1.1e-21 77.5 0.4 1.2 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 EME71595.1 - 2e-10 40.8 2.2 2.6e-08 33.8 0.0 2.7 3 0 0 3 3 3 2 Amidohydrolase family DHOase PF12890.7 EME71595.1 - 1.8e-07 31.2 0.0 3e-07 30.4 0.0 1.3 1 0 0 1 1 1 1 Dihydro-orotase-like G3P_acyltransf PF02660.15 EME71596.1 - 5.4e-48 163.1 15.0 6.2e-48 163.0 15.0 1.0 1 0 0 1 1 1 1 Glycerol-3-phosphate acyltransferase Cupin_2 PF07883.11 EME71597.1 - 6.8e-08 32.1 0.1 8.9e-08 31.7 0.1 1.2 1 0 0 1 1 1 1 Cupin domain Cupin_3 PF05899.12 EME71597.1 - 0.0037 16.9 0.0 0.0054 16.4 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF861) AraC_binding PF02311.19 EME71597.1 - 0.0039 17.1 0.0 0.0047 16.8 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_6 PF12852.7 EME71597.1 - 0.0078 16.0 0.2 0.0094 15.7 0.2 1.2 1 0 0 1 1 1 1 Cupin HupF_HypC PF01455.18 EME71597.1 - 0.15 12.2 0.4 0.25 11.5 0.2 1.5 1 1 0 1 1 1 0 HupF/HypC family ARD PF03079.14 EME71597.1 - 0.17 12.0 0.1 0.33 11.1 0.0 1.4 2 0 0 2 2 2 0 ARD/ARD' family tRNA-synt_1f PF01921.18 EME71598.1 - 1.2e-132 442.3 0.0 1.4e-132 442.0 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class I (K) tRNA-synt_1g PF09334.11 EME71598.1 - 0.018 13.8 0.0 0.026 13.3 0.0 1.2 1 0 0 1 1 1 0 tRNA synthetases class I (M) tRNA-synt_1 PF00133.22 EME71598.1 - 0.089 11.0 0.0 0.12 10.6 0.0 1.1 1 0 0 1 1 1 0 tRNA synthetases class I (I, L, M and V) Hemerythrin PF01814.23 EME71599.1 - 1e-13 52.0 1.8 3.1e-13 50.5 1.8 1.9 1 0 0 1 1 1 1 Hemerythrin HHE cation binding domain ECH_1 PF00378.20 EME71602.1 - 2.3e-62 210.6 0.0 2.5e-62 210.4 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 EME71602.1 - 1.3e-30 107.0 0.2 7.4e-27 94.7 0.0 2.0 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase DUF4479 PF14794.6 EME71602.1 - 0.13 12.1 0.0 0.27 11.1 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4479) TPP_enzyme_C PF02775.21 EME71603.1 - 4.8e-19 68.7 0.2 9.6e-19 67.7 0.2 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_N PF02776.18 EME71603.1 - 0.017 14.7 1.1 0.34 10.5 0.4 2.5 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PUMA PF15826.5 EME71603.1 - 0.09 12.9 0.2 0.36 11.0 0.1 2.1 2 0 0 2 2 2 0 Bcl-2-binding component 3, p53 upregulated modulator of apoptosis Fer4_10 PF13237.6 EME71603.1 - 2.8 8.1 6.4 0.31 11.2 1.7 1.9 2 0 0 2 2 2 0 4Fe-4S dicluster domain POR PF01558.18 EME71606.1 - 3.1e-14 53.4 0.3 6.5e-14 52.4 0.3 1.6 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase HlyD_3 PF13437.6 EME71607.1 - 4.1e-14 53.2 0.2 2.1e-10 41.2 0.0 2.9 2 2 1 3 3 3 2 HlyD family secretion protein Biotin_lipoyl_2 PF13533.6 EME71607.1 - 7.8e-10 38.4 3.1 3e-07 30.2 0.3 3.1 3 0 0 3 3 3 2 Biotin-lipoyl like HlyD_D23 PF16576.5 EME71607.1 - 5.5e-07 29.0 0.0 8.4e-05 21.9 0.0 2.4 1 1 0 1 1 1 1 Barrel-sandwich domain of CusB or HlyD membrane-fusion Biotin_lipoyl PF00364.22 EME71607.1 - 1e-05 25.3 0.0 0.014 15.2 0.0 2.7 2 0 0 2 2 2 2 Biotin-requiring enzyme ABC_tran PF00005.27 EME71608.1 - 4.5e-30 105.0 0.0 5.8e-30 104.6 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 EME71608.1 - 2e-10 41.0 0.4 5.3e-06 26.4 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 EME71608.1 - 6.7e-05 23.5 0.0 8.5e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 EME71608.1 - 0.015 15.0 0.0 2.3 7.8 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_16 PF13191.6 EME71608.1 - 0.017 15.5 0.0 0.034 14.5 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.6 EME71608.1 - 0.026 14.3 0.0 0.052 13.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain SMC_N PF02463.19 EME71608.1 - 0.033 13.6 0.0 4.7 6.6 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain KdpD PF02702.17 EME71608.1 - 0.049 13.1 0.0 0.079 12.4 0.0 1.3 1 0 0 1 1 1 0 Osmosensitive K+ channel His kinase sensor domain AAA_33 PF13671.6 EME71608.1 - 0.067 13.4 0.0 0.12 12.5 0.0 1.6 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 EME71608.1 - 0.071 13.3 0.0 1.1 9.6 0.0 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit SRP54 PF00448.22 EME71608.1 - 0.15 11.7 0.1 0.23 11.0 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Ysc84 PF04366.12 EME71609.1 - 6.4e-25 87.4 2.4 7.1e-25 87.2 1.0 1.7 2 0 0 2 2 2 1 Las17-binding protein actin regulator Cytochrom_C_asm PF01578.20 EME71610.1 - 1.4e-31 109.9 14.6 1.4e-31 109.9 14.6 1.4 2 0 0 2 2 2 1 Cytochrome C assembly protein CcmD PF04995.14 EME71611.1 - 2.2e-11 43.6 2.7 2.2e-11 43.6 2.7 1.3 1 1 0 1 1 1 1 Heme exporter protein D (CcmD) TMEM51 PF15345.6 EME71611.1 - 0.015 15.1 0.0 0.017 14.9 0.0 1.0 1 0 0 1 1 1 0 Transmembrane protein 51 AA_permease_2 PF13520.6 EME71611.1 - 0.077 11.8 0.0 0.083 11.7 0.0 1.0 1 0 0 1 1 1 0 Amino acid permease RIC3 PF15361.6 EME71611.1 - 0.11 12.9 0.0 0.11 12.8 0.0 1.1 1 0 0 1 1 1 0 Resistance to inhibitors of cholinesterase homologue 3 CcmE PF03100.15 EME71612.1 - 4.8e-47 159.1 0.0 5.5e-47 158.9 0.0 1.0 1 0 0 1 1 1 1 CcmE CcmF_C PF16327.5 EME71613.1 - 2.1e-116 388.8 4.2 2.1e-116 388.8 4.2 2.4 3 0 0 3 3 3 1 Cytochrome c-type biogenesis protein CcmF C-terminal Cytochrom_C_asm PF01578.20 EME71613.1 - 1.7e-53 181.6 16.4 5.9e-53 179.8 16.4 2.0 1 0 0 1 1 1 1 Cytochrome C assembly protein Redoxin PF08534.10 EME71614.1 - 2.9e-08 33.5 0.0 4.4e-08 33.0 0.0 1.2 1 0 0 1 1 1 1 Redoxin AhpC-TSA PF00578.21 EME71614.1 - 4.3e-06 26.7 0.0 5.7e-06 26.3 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Thioredoxin_8 PF13905.6 EME71614.1 - 0.086 13.2 0.0 1.5 9.2 0.0 2.1 2 0 0 2 2 2 0 Thioredoxin-like CcmH PF03918.14 EME71615.1 - 4.1e-53 178.5 0.0 4.8e-53 178.3 0.0 1.0 1 0 0 1 1 1 1 Cytochrome C biogenesis protein DUF4342 PF14242.6 EME71615.1 - 0.081 12.9 0.0 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4342) TPR_2 PF07719.17 EME71616.1 - 1.6e-07 30.9 0.0 0.00049 20.0 0.1 3.3 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_6 PF13174.6 EME71616.1 - 3.5e-07 30.4 0.1 0.025 15.2 0.1 3.9 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_14 PF13428.6 EME71616.1 - 1.6e-06 28.4 9.4 0.00082 20.0 0.3 4.5 2 1 2 4 4 4 3 Tetratricopeptide repeat TPR_16 PF13432.6 EME71616.1 - 1.9e-06 28.4 7.1 0.003 18.2 0.0 3.2 2 1 2 4 4 4 3 Tetratricopeptide repeat TPR_15 PF13429.6 EME71616.1 - 4.4e-06 26.1 0.1 8.8e-06 25.1 0.1 1.5 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_19 PF14559.6 EME71616.1 - 3.7e-05 24.2 5.0 0.11 13.0 0.0 3.6 2 1 2 4 4 3 3 Tetratricopeptide repeat TPR_8 PF13181.6 EME71616.1 - 0.0003 20.7 0.0 0.00099 19.1 0.0 2.0 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_17 PF13431.6 EME71616.1 - 0.00079 19.6 0.0 0.7 10.4 0.0 3.4 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_1 PF00515.28 EME71616.1 - 0.0021 17.8 0.0 0.0052 16.5 0.0 1.8 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_11 PF13414.6 EME71616.1 - 0.024 14.3 0.0 9 6.1 0.0 2.5 2 0 0 2 2 2 0 TPR repeat BTAD PF03704.17 EME71616.1 - 0.079 13.4 0.3 0.079 13.4 0.3 2.3 2 0 0 2 2 2 0 Bacterial transcriptional activator domain CcmB PF03379.13 EME71617.1 - 1.6e-75 253.3 26.7 1.8e-75 253.1 26.7 1.0 1 0 0 1 1 1 1 CcmB protein ABC2_membrane PF01061.24 EME71617.1 - 0.0026 17.2 6.3 0.0026 17.2 6.3 1.4 1 1 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_2 PF12679.7 EME71617.1 - 3.1 7.0 19.7 14 4.9 19.4 2.2 1 1 0 1 1 1 0 ABC-2 family transporter protein ABC_tran PF00005.27 EME71618.1 - 2e-25 89.9 0.0 2.6e-25 89.5 0.0 1.1 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 EME71618.1 - 6.7e-09 35.5 0.0 0.00016 21.1 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 EME71618.1 - 1.1e-08 35.3 0.0 2.6e-05 24.2 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 EME71618.1 - 0.00028 20.6 0.4 0.00061 19.5 0.4 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 EME71618.1 - 0.00029 21.3 0.3 0.00048 20.6 0.3 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_PrkA PF08298.11 EME71618.1 - 0.0065 15.4 0.0 0.009 15.0 0.0 1.1 1 0 0 1 1 1 1 PrkA AAA domain Mg_chelatase PF01078.21 EME71618.1 - 0.0081 15.6 0.2 0.012 15.0 0.2 1.3 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_30 PF13604.6 EME71618.1 - 0.01 15.6 0.0 0.021 14.6 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.6 EME71618.1 - 0.023 15.2 0.2 0.032 14.7 0.2 1.1 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 EME71618.1 - 0.038 13.7 0.0 0.052 13.2 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain AAA_5 PF07728.14 EME71618.1 - 0.045 13.7 0.5 0.099 12.6 0.3 1.6 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) DUF2813 PF11398.8 EME71618.1 - 0.068 12.4 0.0 0.097 11.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2813) RsgA_GTPase PF03193.16 EME71618.1 - 0.071 13.0 0.4 0.12 12.2 0.4 1.3 1 0 0 1 1 1 0 RsgA GTPase NACHT PF05729.12 EME71618.1 - 0.1 12.5 0.1 0.21 11.5 0.1 1.4 1 0 0 1 1 1 0 NACHT domain AAA_22 PF13401.6 EME71618.1 - 0.11 12.7 0.0 0.22 11.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF748 PF05359.11 EME71619.1 - 2.6e-28 99.1 1.7 2.3e-18 66.8 0.0 3.9 3 1 1 4 4 4 2 Domain of Unknown Function (DUF748) OmpA PF00691.20 EME71619.1 - 0.039 14.3 0.0 0.37 11.2 0.0 2.5 2 1 0 2 2 2 0 OmpA family RDD PF06271.12 EME71619.1 - 0.1 12.8 0.3 7 6.9 0.0 2.4 2 0 0 2 2 2 0 RDD family HATPase_c PF02518.26 EME71620.1 - 6.3e-24 84.6 0.0 1.3e-23 83.7 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 EME71620.1 - 4.4e-08 33.0 3.3 7.3e-08 32.3 0.0 2.5 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain dCache_1 PF02743.18 EME71620.1 - 7.8e-08 32.4 0.0 2e-07 31.1 0.0 1.6 2 0 0 2 2 2 1 Cache domain HATPase_c_5 PF14501.6 EME71620.1 - 0.0016 18.3 0.0 0.0028 17.5 0.0 1.4 1 0 0 1 1 1 1 GHKL domain FCD PF07729.12 EME71621.1 - 6.6e-27 94.4 12.4 9.7e-27 93.9 12.4 1.2 1 0 0 1 1 1 1 FCD domain GntR PF00392.21 EME71621.1 - 5.3e-16 58.0 1.4 1.1e-15 56.9 0.0 2.3 3 0 0 3 3 3 1 Bacterial regulatory proteins, gntR family HTH_24 PF13412.6 EME71621.1 - 5e-08 32.4 0.0 9.9e-08 31.4 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 EME71621.1 - 6.1e-08 32.5 0.0 1.2e-07 31.6 0.0 1.4 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.7 EME71621.1 - 5.9e-07 29.3 0.5 5.4e-06 26.2 0.0 2.4 2 0 0 2 2 2 1 MarR family HTH_AsnC-type PF13404.6 EME71621.1 - 6.7e-06 25.8 0.0 2.1e-05 24.2 0.0 1.9 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain Fe_dep_repress PF01325.19 EME71621.1 - 2.1e-05 24.6 0.0 3.8e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_Crp_2 PF13545.6 EME71621.1 - 6.9e-05 22.7 0.0 0.00015 21.7 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_29 PF13551.6 EME71621.1 - 0.00037 20.5 0.0 0.0015 18.5 0.0 2.1 1 0 0 1 1 1 1 Winged helix-turn helix TrmB PF01978.19 EME71621.1 - 0.00047 20.0 0.0 0.001 18.9 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 EME71621.1 - 0.00076 19.4 0.0 0.0016 18.4 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_CodY PF08222.11 EME71621.1 - 0.0029 17.1 0.0 0.0057 16.2 0.0 1.4 1 0 0 1 1 1 1 CodY helix-turn-helix domain DUF3731 PF12531.8 EME71621.1 - 0.0079 16.0 0.0 0.019 14.8 0.0 1.5 1 0 0 1 1 1 1 DNA-K related protein HTH_IclR PF09339.10 EME71621.1 - 0.0099 15.7 0.0 0.03 14.1 0.0 1.8 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_23 PF13384.6 EME71621.1 - 0.011 15.6 1.5 0.028 14.2 0.0 2.4 3 1 0 3 3 3 0 Homeodomain-like domain HTH_20 PF12840.7 EME71621.1 - 0.016 15.3 0.1 0.076 13.1 0.0 2.2 3 0 0 3 3 2 0 Helix-turn-helix domain HTH_1 PF00126.27 EME71621.1 - 0.017 15.1 0.6 0.035 14.0 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family LZ_Tnp_IS481 PF13011.6 EME71621.1 - 0.025 15.1 0.2 0.41 11.2 0.0 2.4 2 0 0 2 2 2 0 leucine-zipper of insertion element IS481 Rrf2 PF02082.20 EME71621.1 - 0.053 13.9 0.0 0.12 12.7 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator HTH_27 PF13463.6 EME71621.1 - 0.061 13.8 0.1 0.16 12.5 0.0 1.8 2 0 0 2 2 1 0 Winged helix DNA-binding domain HTH_41 PF14502.6 EME71621.1 - 0.063 13.0 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain DUF3782 PF12644.7 EME71621.1 - 0.11 12.7 0.2 0.25 11.5 0.2 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3782) HTH_28 PF13518.6 EME71621.1 - 0.17 12.0 2.1 0.93 9.7 0.0 2.6 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_38 PF13936.6 EME71621.1 - 0.31 10.8 1.8 1.4 8.8 0.0 2.9 4 0 0 4 4 4 0 Helix-turn-helix domain Na_sulph_symp PF00939.19 EME71622.1 - 3.2e-27 95.7 25.5 4e-27 95.4 25.5 1.0 1 0 0 1 1 1 1 Sodium:sulfate symporter transmembrane region CitMHS PF03600.16 EME71622.1 - 1.1e-12 47.8 57.4 8.5e-12 44.9 36.5 1.7 1 1 1 2 2 2 2 Citrate transporter DUF2786 PF10979.8 EME71623.1 - 0.00011 22.0 1.8 0.00011 22.0 1.8 2.5 3 0 0 3 3 1 1 Protein of unknown function (DUF2786) Cnn_1N PF07989.11 EME71623.1 - 0.00045 20.3 0.2 0.0014 18.7 0.0 1.8 2 0 0 2 2 2 1 Centrosomin N-terminal motif 1 HALZ PF02183.18 EME71623.1 - 0.0009 19.4 5.0 0.082 13.1 0.1 3.4 3 0 0 3 3 3 1 Homeobox associated leucine zipper YabA PF06156.13 EME71623.1 - 0.00099 19.7 2.1 1.2 9.8 1.2 3.0 1 1 1 2 2 2 1 Initiation control protein YabA HOOK PF05622.12 EME71623.1 - 0.0012 17.1 1.0 0.0017 16.6 1.0 1.2 1 0 0 1 1 1 1 HOOK protein betaPIX_CC PF16523.5 EME71623.1 - 0.0024 17.6 0.2 0.02 14.7 0.0 2.2 2 0 0 2 2 2 1 betaPIX coiled coil Rootletin PF15035.6 EME71623.1 - 0.0045 17.0 4.1 0.0096 16.0 4.1 1.5 1 1 0 1 1 1 1 Ciliary rootlet component, centrosome cohesion TSC22 PF01166.18 EME71623.1 - 0.008 16.5 1.3 0.081 13.2 0.0 2.5 3 0 0 3 3 2 1 TSC-22/dip/bun family NRBF2 PF08961.10 EME71623.1 - 0.0089 15.7 1.4 0.23 11.0 0.0 2.3 2 1 0 2 2 2 1 Nuclear receptor-binding factor 2, autophagy regulator TolA_bind_tri PF16331.5 EME71623.1 - 0.011 15.8 4.3 1.9 8.6 0.5 2.9 2 1 1 3 3 3 0 TolA binding protein trimerisation K-box PF01486.17 EME71623.1 - 0.023 14.9 0.3 1.4 9.1 0.0 2.7 2 1 0 2 2 2 0 K-box region DUF4407 PF14362.6 EME71623.1 - 0.037 13.4 7.1 0.045 13.1 7.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) ZapB PF06005.12 EME71623.1 - 0.045 14.2 8.3 5.7 7.5 4.4 3.1 1 1 1 2 2 2 0 Cell division protein ZapB bZIP_1 PF00170.21 EME71623.1 - 0.049 13.7 4.1 1.6 8.9 0.1 2.9 3 0 0 3 3 3 0 bZIP transcription factor CENP-H PF05837.12 EME71623.1 - 0.052 14.0 1.6 0.25 11.8 0.3 2.2 1 1 1 2 2 2 0 Centromere protein H (CENP-H) KASH_CCD PF14662.6 EME71623.1 - 0.074 12.9 5.2 1.2 8.9 5.2 2.3 1 1 0 1 1 1 0 Coiled-coil region of CCDC155 or KASH MAD PF05557.13 EME71623.1 - 0.077 11.4 3.2 0.39 9.0 0.9 2.0 2 0 0 2 2 2 0 Mitotic checkpoint protein bZIP_2 PF07716.15 EME71623.1 - 0.078 13.1 11.1 0.34 11.0 0.6 3.9 4 0 0 4 4 4 0 Basic region leucine zipper ATG16 PF08614.11 EME71623.1 - 0.13 12.5 9.4 0.34 11.1 9.4 1.9 1 1 0 1 1 1 0 Autophagy protein 16 (ATG16) Leu_zip PF15294.6 EME71623.1 - 0.15 11.6 0.5 0.3 10.5 0.3 1.5 1 1 1 2 2 2 0 Leucine zipper CtIP_N PF10482.9 EME71623.1 - 0.21 11.6 1.1 1.1 9.3 0.0 2.3 2 1 0 2 2 2 0 Tumour-suppressor protein CtIP N-terminal domain PRKG1_interact PF15898.5 EME71623.1 - 0.21 12.5 5.4 4 8.4 2.5 2.5 2 1 0 2 2 2 0 cGMP-dependent protein kinase interacting domain TPR_MLP1_2 PF07926.12 EME71623.1 - 0.22 11.6 8.6 0.81 9.7 5.0 2.3 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein HAP1_N PF04849.13 EME71623.1 - 0.23 10.6 3.5 2.3 7.4 0.4 2.2 1 1 0 2 2 2 0 HAP1 N-terminal conserved region Shugoshin_N PF07558.11 EME71623.1 - 0.28 11.1 0.2 0.28 11.1 0.2 1.9 2 0 0 2 2 1 0 Shugoshin N-terminal coiled-coil region DUF2205 PF10224.9 EME71623.1 - 0.29 11.2 3.3 7.7 6.6 0.1 2.9 2 1 1 3 3 3 0 Short coiled-coil protein MCC-bdg_PDZ PF10506.9 EME71623.1 - 0.35 10.9 4.2 36 4.5 0.0 3.7 2 1 0 3 3 3 0 PDZ domain of MCC-2 bdg protein for Usher syndrome Uso1_p115_C PF04871.13 EME71623.1 - 0.37 11.2 4.5 0.97 9.8 1.6 2.4 1 1 1 2 2 2 0 Uso1 / p115 like vesicle tethering protein, C terminal region CENP-F_leu_zip PF10473.9 EME71623.1 - 0.4 10.7 5.4 6.7 6.7 0.2 2.2 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Spc7 PF08317.11 EME71623.1 - 0.4 9.5 1.8 0.7 8.7 1.8 1.4 1 1 0 1 1 1 0 Spc7 kinetochore protein COMP PF11598.8 EME71623.1 - 0.52 10.8 4.2 0.16 12.5 1.1 1.7 2 0 0 2 2 1 0 Cartilage oligomeric matrix protein DivIC PF04977.15 EME71623.1 - 0.53 10.1 6.1 16 5.4 0.0 3.2 2 1 1 3 3 3 0 Septum formation initiator Nnf1 PF03980.14 EME71623.1 - 0.55 10.6 8.8 7.2 7.0 0.1 2.4 2 0 0 2 2 2 0 Nnf1 SOGA PF11365.8 EME71623.1 - 0.57 11.3 3.4 3.1 9.0 3.4 2.0 1 1 0 1 1 1 0 Protein SOGA Fez1 PF06818.15 EME71623.1 - 0.6 10.5 4.4 0.69 10.3 1.8 1.9 1 1 1 2 2 2 0 Fez1 Macoilin PF09726.9 EME71623.1 - 0.6 8.6 1.9 0.81 8.2 1.9 1.1 1 0 0 1 1 1 0 Macoilin family FlaC_arch PF05377.11 EME71623.1 - 0.7 10.3 1.7 1.6 9.2 0.3 2.2 3 0 0 3 3 1 0 Flagella accessory protein C (FlaC) GAS PF13851.6 EME71623.1 - 0.75 9.1 3.8 0.81 9.0 0.9 2.0 2 0 0 2 2 2 0 Growth-arrest specific micro-tubule binding Spc24 PF08286.11 EME71623.1 - 1.4 9.2 3.5 9.8 6.5 1.2 2.7 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 APG6_N PF17675.1 EME71623.1 - 2.2 8.8 6.9 50 4.4 5.3 2.2 2 0 0 2 2 2 0 Apg6 coiled-coil region FUSC PF04632.12 EME71623.1 - 2.6 6.5 14.8 3 6.3 14.8 1.2 1 0 0 1 1 1 0 Fusaric acid resistance protein family ADIP PF11559.8 EME71623.1 - 2.9 8.0 7.4 6.1 6.9 3.1 2.6 2 1 0 2 2 2 0 Afadin- and alpha -actinin-Binding Jnk-SapK_ap_N PF09744.9 EME71623.1 - 4.3 7.6 6.9 4.7 7.4 2.3 2.1 2 0 0 2 2 2 0 JNK_SAPK-associated protein-1 Fer4_18 PF13746.6 EME71624.1 - 4.8e-39 133.1 6.4 1.5e-38 131.5 6.4 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain FixG_C PF11614.8 EME71624.1 - 1.7e-29 102.4 0.0 2.5e-29 101.9 0.0 1.2 1 0 0 1 1 1 1 IG-like fold at C-terminal of FixG, putative oxidoreductase Fer4_7 PF12838.7 EME71624.1 - 3.7e-09 37.0 6.1 5.3e-05 23.7 1.4 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 EME71624.1 - 1.4e-08 34.8 8.2 1.5e-05 25.1 1.2 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_5 PF12801.7 EME71624.1 - 8.2e-08 32.1 5.1 8.2e-08 32.1 5.1 3.3 4 0 0 4 4 3 1 4Fe-4S binding domain Fer4_17 PF13534.6 EME71624.1 - 4e-07 30.5 5.5 0.00033 21.1 0.5 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 EME71624.1 - 4.4e-05 23.8 7.9 0.013 16.0 0.9 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 EME71624.1 - 0.00016 21.7 13.6 0.013 15.6 13.3 2.5 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.7 EME71624.1 - 0.00019 21.7 19.3 0.07 13.7 4.1 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4 PF00037.27 EME71624.1 - 0.00027 20.6 23.6 0.0024 17.6 4.6 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.7 EME71624.1 - 0.00058 19.8 21.1 0.0044 17.0 3.9 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 EME71624.1 - 0.028 14.5 22.2 0.076 13.1 5.9 3.0 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_3 PF12798.7 EME71624.1 - 0.049 14.6 26.1 0.068 14.1 5.5 3.4 3 0 0 3 3 3 0 4Fe-4S binding domain EMP70 PF02990.16 EME71624.1 - 0.053 12.2 1.1 0.083 11.5 1.1 1.2 1 0 0 1 1 1 0 Endomembrane protein 70 Fer4_16 PF13484.6 EME71624.1 - 0.3 12.1 18.4 0.19 12.7 4.6 3.1 2 1 1 3 3 3 0 4Fe-4S double cluster binding domain Fer4_13 PF13370.6 EME71624.1 - 0.33 11.5 13.3 0.9 10.1 1.4 2.7 3 0 0 3 3 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_21 PF14697.6 EME71624.1 - 0.93 9.7 19.0 2.6 8.2 16.3 2.6 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 EME71624.1 - 5.1 7.9 12.1 1.3 9.8 2.1 2.6 1 1 1 2 2 2 0 4Fe-4S single cluster domain Response_reg PF00072.24 EME71625.1 - 6.8e-17 61.6 0.0 8.4e-17 61.4 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain HAGH_C PF16123.5 EME71626.1 - 4.6e-26 91.2 0.0 7.3e-26 90.5 0.0 1.3 1 0 0 1 1 1 1 Hydroxyacylglutathione hydrolase C-terminus Lactamase_B PF00753.27 EME71626.1 - 7e-18 65.3 4.0 3.1e-17 63.2 4.0 1.9 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily DUF4177 PF13783.6 EME71626.1 - 0.021 15.1 0.0 0.034 14.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4177) Lactamase_B_2 PF12706.7 EME71626.1 - 0.043 13.3 2.5 0.14 11.6 2.5 1.8 1 1 0 1 1 1 0 Beta-lactamase superfamily domain Methyltransf_11 PF08241.12 EME71627.1 - 4.3e-07 30.5 0.0 9.7e-07 29.4 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 EME71627.1 - 0.0017 19.0 0.0 0.0041 17.8 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 EME71627.1 - 0.006 16.4 0.0 0.0087 15.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.15 EME71627.1 - 0.067 13.0 0.0 0.15 11.9 0.0 1.5 2 0 0 2 2 2 0 Hypothetical methyltransferase Ubie_methyltran PF01209.18 EME71627.1 - 0.12 11.7 0.0 0.16 11.3 0.0 1.2 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family MTS PF05175.14 EME71627.1 - 0.13 11.8 0.0 0.21 11.1 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain GTP_EFTU PF00009.27 EME71628.1 - 8.8e-48 162.4 0.0 1.4e-47 161.8 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain RF3_C PF16658.5 EME71628.1 - 7.9e-45 151.9 0.0 1.3e-44 151.2 0.0 1.3 1 0 0 1 1 1 1 Class II release factor RF3, C-terminal domain GTP_EFTU_D2 PF03144.25 EME71628.1 - 2.4e-06 27.8 0.0 4.8e-06 26.9 0.0 1.5 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 EME71628.1 - 2.2e-05 24.5 0.0 4.7e-05 23.5 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase EFG_II PF14492.6 EME71628.1 - 0.027 14.6 0.0 0.054 13.6 0.0 1.5 1 0 0 1 1 1 0 Elongation Factor G, domain II Arf PF00025.21 EME71628.1 - 0.028 13.9 0.0 0.12 11.8 0.0 1.9 2 0 0 2 2 2 0 ADP-ribosylation factor family FeoB_N PF02421.18 EME71628.1 - 0.085 12.4 0.0 1.9 8.0 0.0 2.4 2 0 0 2 2 2 0 Ferrous iron transport protein B SRPRB PF09439.10 EME71628.1 - 0.16 11.4 0.0 0.72 9.3 0.0 2.0 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit Nitroreductase PF00881.24 EME71630.1 - 1.3e-15 57.9 0.0 7.9e-08 32.5 0.0 3.0 2 1 0 2 2 2 2 Nitroreductase family DAGK_cat PF00781.24 EME71632.1 - 1.9e-27 95.3 0.6 2.9e-27 94.8 0.6 1.3 1 0 0 1 1 1 1 Diacylglycerol kinase catalytic domain NAD_kinase PF01513.21 EME71632.1 - 0.00083 18.6 0.1 0.0011 18.2 0.1 1.2 1 0 0 1 1 1 1 ATP-NAD kinase Metallophos_2 PF12850.7 EME71633.1 - 6.3e-12 46.0 1.3 5.9e-11 42.8 1.3 2.0 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 EME71633.1 - 1e-11 45.7 3.7 1.8e-11 45.0 3.7 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase PGA_cap PF09587.10 EME71633.1 - 0.19 11.1 1.0 0.7 9.3 0.5 2.0 2 1 0 2 2 2 0 Bacterial capsule synthesis protein PGA_cap Glyco_trans_1_4 PF13692.6 EME71634.1 - 1.2e-17 64.6 0.0 2.2e-17 63.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 EME71634.1 - 2.5e-17 63.4 0.9 2.4e-16 60.2 0.5 2.5 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.20 EME71634.1 - 7.8e-15 54.8 0.0 2.5e-14 53.2 0.0 1.7 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 EME71634.1 - 2.5e-07 31.3 10.5 6.1e-07 30.0 4.5 2.8 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain PMT_2 PF13231.6 EME71635.1 - 2.1e-11 44.3 14.1 2.1e-11 44.3 14.1 3.5 2 1 2 4 4 4 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.18 EME71635.1 - 2.7e-06 27.1 6.4 2.7e-06 27.1 6.4 2.5 2 1 1 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase GATase_7 PF13537.6 EME71635.1 - 0.064 13.2 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 Glutamine amidotransferase domain PAP2 PF01569.21 EME71636.1 - 1.8e-23 82.8 6.4 1.8e-23 82.8 6.4 1.6 2 0 0 2 2 2 1 PAP2 superfamily PAP2_3 PF14378.6 EME71636.1 - 1.2e-05 25.1 8.5 1.2e-05 25.1 8.5 1.9 2 1 0 2 2 2 1 PAP2 superfamily FAD_binding_3 PF01494.19 EME71637.1 - 6.2e-89 298.7 0.0 7.1e-89 298.5 0.0 1.0 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.6 EME71637.1 - 0.00015 21.9 0.2 0.0004 20.6 0.2 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.6 EME71637.1 - 0.003 16.9 0.6 0.0047 16.2 0.6 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 EME71637.1 - 0.0045 16.3 0.1 0.0064 15.8 0.1 1.2 1 0 0 1 1 1 1 Thi4 family Pyr_redox_2 PF07992.14 EME71637.1 - 0.023 13.9 0.4 0.067 12.4 0.2 1.8 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 EME71637.1 - 0.091 11.4 0.4 0.13 10.9 0.4 1.2 1 0 0 1 1 1 0 HI0933-like protein Lycopene_cycl PF05834.12 EME71637.1 - 0.17 10.9 0.7 0.39 9.7 0.7 1.6 1 0 0 1 1 1 0 Lycopene cyclase protein LigB PF02900.18 EME71638.1 - 7.7e-57 192.4 0.0 9e-57 192.2 0.0 1.0 1 0 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase LigA PF07746.11 EME71639.1 - 4.1e-33 113.4 0.9 4.8e-33 113.2 0.9 1.1 1 0 0 1 1 1 1 Aromatic-ring-opening dioxygenase LigAB, LigA subunit Aldo_ket_red PF00248.21 EME71640.1 - 2.2e-70 237.2 0.0 2.5e-70 237.0 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family GFO_IDH_MocA PF01408.22 EME71641.1 - 4.4e-24 85.6 0.8 7e-24 85.0 0.8 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_3 PF03447.16 EME71641.1 - 0.00037 21.1 0.8 0.0006 20.5 0.8 1.3 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.24 EME71641.1 - 0.0018 18.7 0.1 0.003 18.0 0.1 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Shikimate_DH PF01488.20 EME71641.1 - 0.003 17.6 0.0 0.005 16.9 0.0 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.17 EME71641.1 - 0.0087 16.6 0.2 0.015 15.8 0.2 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent CoA_binding PF02629.19 EME71641.1 - 0.016 15.9 0.4 0.072 13.8 0.5 2.1 2 1 0 2 2 2 0 CoA binding domain TrkA_N PF02254.18 EME71641.1 - 0.085 13.1 0.4 0.19 12.0 0.4 1.6 1 1 0 1 1 1 0 TrkA-N domain Amidohydro_2 PF04909.14 EME71642.1 - 1.6e-51 175.9 2.6 1.8e-51 175.6 2.6 1.0 1 0 0 1 1 1 1 Amidohydrolase DUF1932 PF09130.11 EME71643.1 - 1.3e-15 57.1 2.2 2.4e-15 56.3 1.5 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF1932) NAD_binding_2 PF03446.15 EME71643.1 - 1.4e-06 28.5 0.0 4.4e-06 27.0 0.0 1.8 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 EME71643.1 - 0.00019 21.9 0.1 0.00085 19.9 0.0 2.1 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 EME71643.1 - 0.026 13.9 0.2 0.05 13.0 0.2 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 EME71643.1 - 0.099 12.9 0.6 12 6.2 0.0 2.4 2 0 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain RraA-like PF03737.15 EME71644.1 - 3.4e-39 134.4 4.8 4.7e-39 134.0 4.8 1.2 1 0 0 1 1 1 1 Aldolase/RraA Acyl-CoA_dh_N PF02771.16 EME71644.1 - 0.0095 16.6 0.6 1.9 9.1 0.0 2.3 2 0 0 2 2 2 2 Acyl-CoA dehydrogenase, N-terminal domain Amidohydro_2 PF04909.14 EME71645.1 - 2.6e-57 194.8 0.3 3e-57 194.6 0.3 1.0 1 0 0 1 1 1 1 Amidohydrolase PrpF PF04303.13 EME71646.1 - 3e-108 362.1 0.2 3.4e-108 361.9 0.2 1.0 1 0 0 1 1 1 1 PrpF protein Pro_racemase PF05544.11 EME71646.1 - 0.003 16.7 1.4 0.048 12.7 0.0 2.1 2 0 0 2 2 2 2 Proline racemase LysR_substrate PF03466.20 EME71647.1 - 1.5e-35 122.5 6.4 2.1e-35 122.0 6.4 1.2 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 EME71647.1 - 6.8e-21 74.0 1.2 6.8e-21 74.0 1.2 2.0 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family PTPS PF01242.19 EME71648.1 - 3.9e-37 126.9 0.1 5e-37 126.6 0.1 1.0 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase Radical_SAM PF04055.21 EME71649.1 - 4e-07 30.6 0.0 5.5e-07 30.1 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 EME71649.1 - 0.023 15.0 0.0 0.037 14.3 0.0 1.4 1 0 0 1 1 1 0 4Fe-4S single cluster domain Fer4_14 PF13394.6 EME71649.1 - 0.023 14.8 0.1 0.09 12.9 0.1 1.9 1 1 0 1 1 1 0 4Fe-4S single cluster domain PASTA PF03793.19 EME71649.1 - 0.15 12.0 0.0 0.33 10.8 0.0 1.5 1 0 0 1 1 1 0 PASTA domain EAL PF00563.20 EME71651.1 - 3.5e-80 269.0 0.0 5.1e-80 268.4 0.0 1.3 1 0 0 1 1 1 1 EAL domain GGDEF PF00990.21 EME71651.1 - 3.2e-52 176.5 0.1 1e-51 174.9 0.0 1.9 2 0 0 2 2 2 1 Diguanylate cyclase, GGDEF domain PAS_9 PF13426.7 EME71651.1 - 7.6e-37 125.7 0.0 2.9e-13 50.0 0.0 4.1 5 0 0 5 5 5 3 PAS domain PAS PF00989.25 EME71651.1 - 4.1e-32 110.5 0.0 4.2e-13 49.3 0.0 4.3 4 0 0 4 4 4 3 PAS fold PAS_8 PF13188.7 EME71651.1 - 3.2e-28 97.2 0.0 4.3e-08 33.0 0.0 3.8 3 0 0 3 3 3 3 PAS domain PAS_4 PF08448.10 EME71651.1 - 7.5e-23 80.9 3.7 6.2e-08 32.9 0.0 4.0 4 0 0 4 4 4 3 PAS fold PAS_3 PF08447.12 EME71651.1 - 8.6e-13 48.4 0.0 1.6e-07 31.5 0.0 3.6 3 0 0 3 3 3 2 PAS fold PAS_7 PF12860.7 EME71651.1 - 1.9e-05 24.8 0.0 1.1 9.5 0.0 4.9 4 1 0 4 4 4 2 PAS fold MLTR_LBD PF17765.1 EME71651.1 - 0.046 13.9 0.2 1.2 9.2 0.1 2.8 2 0 0 2 2 2 0 MmyB-like transcription regulator ligand binding domain Methyltrans_RNA PF04452.14 EME71652.1 - 1.2e-54 185.0 0.0 1.4e-54 184.8 0.0 1.0 1 0 0 1 1 1 1 RNA methyltransferase Pep_deformylase PF01327.21 EME71653.1 - 1.7e-54 183.7 0.0 1.9e-54 183.6 0.0 1.0 1 0 0 1 1 1 1 Polypeptide deformylase Formyl_trans_N PF00551.19 EME71654.1 - 1.8e-45 154.9 0.0 2.3e-45 154.5 0.0 1.1 1 0 0 1 1 1 1 Formyl transferase Formyl_trans_C PF02911.18 EME71654.1 - 5.3e-26 90.8 0.0 8.7e-26 90.1 0.0 1.4 1 0 0 1 1 1 1 Formyl transferase, C-terminal domain PseudoU_synth_1 PF01416.20 EME71655.1 - 5.5e-45 152.3 0.0 6.4e-31 107.0 0.0 2.1 2 0 0 2 2 2 2 tRNA pseudouridine synthase AAA_25 PF13481.6 EME71655.1 - 0.0073 15.9 0.2 0.027 14.1 0.2 1.9 1 1 0 1 1 1 1 AAA domain GT87 PF09594.10 EME71656.1 - 7.9e-07 29.0 37.4 7.9e-07 29.0 37.4 2.6 2 1 0 2 2 2 1 Glycosyltransferase family 87 PMT_2 PF13231.6 EME71656.1 - 0.00011 22.5 5.2 0.00011 22.5 5.2 2.9 2 1 1 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PTPS_related PF10131.9 EME71656.1 - 0.00026 19.4 7.2 0.00039 18.9 7.2 1.3 1 0 0 1 1 1 1 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein PYC_OADA PF02436.18 EME71657.1 - 1.2e-72 243.9 0.1 3.4e-72 242.4 0.0 1.8 2 0 0 2 2 2 1 Conserved carboxylase domain CPSase_L_D2 PF02786.17 EME71657.1 - 1.9e-71 239.9 0.3 3.2e-71 239.2 0.3 1.4 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Biotin_carb_N PF00289.22 EME71657.1 - 1.6e-39 134.8 0.1 1.2e-38 132.0 0.0 2.5 2 0 0 2 2 2 1 Biotin carboxylase, N-terminal domain Biotin_carb_C PF02785.19 EME71657.1 - 2.3e-33 114.5 0.0 8.3e-33 112.7 0.0 2.0 2 0 0 2 2 2 1 Biotin carboxylase C-terminal domain HMGL-like PF00682.19 EME71657.1 - 2e-31 109.5 0.1 3.6e-31 108.7 0.1 1.4 1 0 0 1 1 1 1 HMGL-like Biotin_lipoyl PF00364.22 EME71657.1 - 7.2e-15 54.6 1.4 1.5e-14 53.6 1.4 1.6 1 0 0 1 1 1 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 EME71657.1 - 1.8e-09 37.3 0.1 4.2e-06 26.5 0.0 2.6 1 1 1 2 2 2 2 Biotin-lipoyl like ATP-grasp PF02222.22 EME71657.1 - 3.7e-08 33.1 0.1 8.4e-08 32.0 0.1 1.5 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.13 EME71657.1 - 4.3e-07 29.7 0.0 8.8e-07 28.7 0.0 1.5 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp_3 PF02655.14 EME71657.1 - 0.0049 16.9 0.0 0.01 15.9 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain HlyD_3 PF13437.6 EME71657.1 - 0.0057 17.3 0.7 0.14 12.9 0.6 2.6 1 1 0 1 1 1 1 HlyD family secretion protein HlyD_D23 PF16576.5 EME71657.1 - 0.016 14.4 0.4 0.5 9.6 0.0 2.2 1 1 1 2 2 2 0 Barrel-sandwich domain of CusB or HlyD membrane-fusion ATPgrasp_Ter PF15632.6 EME71657.1 - 0.023 14.5 0.0 0.11 12.2 0.0 2.2 2 0 0 2 2 2 0 ATP-grasp in the biosynthetic pathway with Ter operon ADH_zinc_N PF00107.26 EME71657.1 - 0.12 12.4 1.3 2.5 8.1 0.1 3.3 4 0 0 4 4 4 0 Zinc-binding dehydrogenase FCD PF07729.12 EME71658.1 - 2.1e-23 83.1 7.3 5.5e-23 81.8 7.3 1.7 1 0 0 1 1 1 1 FCD domain GntR PF00392.21 EME71658.1 - 1.4e-19 69.5 0.5 3.9e-19 68.1 0.5 1.8 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family Rrf2 PF02082.20 EME71658.1 - 6.3e-06 26.4 0.9 0.00014 22.1 0.0 2.6 3 0 0 3 3 3 1 Transcriptional regulator HTH_20 PF12840.7 EME71658.1 - 0.00038 20.5 0.5 0.0013 18.8 0.5 2.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.12 EME71658.1 - 0.0004 20.1 0.0 0.00082 19.1 0.0 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain MarR_2 PF12802.7 EME71658.1 - 0.00049 19.9 1.9 0.0012 18.6 0.2 2.3 2 0 0 2 2 2 1 MarR family Fe_dep_repress PF01325.19 EME71658.1 - 0.00075 19.7 0.0 0.0016 18.6 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_Crp_2 PF13545.6 EME71658.1 - 0.0012 18.8 0.1 0.0032 17.4 0.1 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_24 PF13412.6 EME71658.1 - 0.0012 18.4 0.1 0.003 17.1 0.1 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 EME71658.1 - 0.0035 17.2 0.0 0.014 15.3 0.0 2.0 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 EME71658.1 - 0.0038 17.1 0.0 0.011 15.6 0.0 1.8 1 0 0 1 1 1 1 MarR family PaaX PF07848.12 EME71658.1 - 0.0078 16.4 0.1 0.023 14.9 0.1 1.7 1 0 0 1 1 1 1 PaaX-like protein HTH_IclR PF09339.10 EME71658.1 - 0.011 15.5 0.7 0.025 14.4 0.1 1.9 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_27 PF13463.6 EME71658.1 - 0.016 15.7 0.4 0.084 13.4 0.0 2.4 3 0 0 3 3 2 0 Winged helix DNA-binding domain HTH_11 PF08279.12 EME71658.1 - 0.026 14.5 0.1 0.079 12.9 0.1 1.8 1 0 0 1 1 1 0 HTH domain GHMP_kinases_C PF08544.13 EME71658.1 - 0.083 13.3 0.1 0.23 11.8 0.1 1.7 1 0 0 1 1 1 0 GHMP kinases C terminal HTH_5 PF01022.20 EME71658.1 - 0.097 12.6 1.9 0.13 12.1 0.1 2.2 3 0 0 3 3 3 0 Bacterial regulatory protein, arsR family dCMP_cyt_deam_1 PF00383.23 EME71659.1 - 1.2e-26 92.5 0.0 1.6e-26 92.1 0.0 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region MafB19-deam PF14437.6 EME71659.1 - 5.3e-26 91.0 0.0 5.9e-26 90.9 0.0 1.0 1 0 0 1 1 1 1 MafB19-like deaminase Bd3614-deam PF14439.6 EME71659.1 - 0.00056 20.0 1.1 0.0019 18.3 1.0 1.9 1 1 1 2 2 2 1 Bd3614-like deaminase Orbi_VP7 PF00897.17 EME71659.1 - 0.083 11.9 0.1 0.11 11.5 0.1 1.1 1 0 0 1 1 1 0 Orbivirus inner capsid protein VP7 SNAD4 PF18750.1 EME71659.1 - 0.13 12.4 0.0 0.18 11.9 0.0 1.2 1 0 0 1 1 1 0 Secreted Novel AID/APOBEC-like Deaminase 4 TNT PF14021.6 EME71660.1 - 3e-24 85.4 0.0 4.2e-24 84.9 0.0 1.1 1 0 0 1 1 1 1 Tuberculosis necrotizing toxin DUF3090 PF11290.8 EME71660.1 - 0.091 12.6 0.0 0.12 12.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3090) UbiD PF01977.16 EME71661.1 - 1.3e-170 567.6 0.0 1.5e-170 567.4 0.0 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase HD_5 PF13487.6 EME71662.1 - 5.3e-23 81.0 0.0 1e-22 80.1 0.0 1.5 1 0 0 1 1 1 1 HD domain GAF PF01590.26 EME71662.1 - 6.7e-12 46.2 0.0 1.2e-11 45.4 0.0 1.4 1 0 0 1 1 1 1 GAF domain HD PF01966.22 EME71662.1 - 2.8e-10 40.5 0.0 1.2e-05 25.5 0.0 2.7 2 0 0 2 2 2 2 HD domain GAF_2 PF13185.6 EME71662.1 - 8.6e-08 32.6 0.0 1.7e-07 31.6 0.0 1.6 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.6 EME71662.1 - 2.1e-05 24.8 0.1 0.00028 21.2 0.0 2.4 3 0 0 3 3 3 1 GAF domain RibD_C PF01872.17 EME71663.1 - 5.2e-19 68.9 0.0 4.9e-18 65.7 0.0 1.9 1 1 0 1 1 1 1 RibD C-terminal domain DHFR_1 PF00186.19 EME71663.1 - 2.6e-08 33.7 0.0 3.6e-08 33.3 0.0 1.2 1 0 0 1 1 1 1 Dihydrofolate reductase NMT1_3 PF16868.5 EME71664.1 - 5.4e-14 52.3 0.0 8.1e-13 48.4 0.0 2.1 2 0 0 2 2 2 1 NMT1-like family ETRAMP PF09716.10 EME71664.1 - 0.1 12.7 0.2 0.16 12.0 0.2 1.3 1 0 0 1 1 1 0 Malarial early transcribed membrane protein (ETRAMP) CopD PF05425.13 EME71665.1 - 6.8e-15 55.3 9.7 6.8e-15 55.3 9.7 4.0 4 1 0 4 4 4 1 Copper resistance protein D DUF1453 PF07301.11 EME71665.1 - 0.046 13.7 1.3 18 5.3 0.1 3.4 3 0 0 3 3 3 0 Protein of unknown function (DUF1453) COPI_assoc PF08507.10 EME71665.1 - 0.17 11.9 7.9 0.55 10.3 0.6 3.9 2 1 1 3 3 3 0 COPI associated protein DUF1345 PF07077.11 EME71665.1 - 0.4 10.4 9.8 3.8 7.2 0.2 3.3 3 0 0 3 3 3 0 Protein of unknown function (DUF1345) CopC PF04234.12 EME71666.1 - 9.5e-15 55.4 0.0 1.1e-14 55.2 0.0 1.0 1 0 0 1 1 1 1 CopC domain Polysacc_synt_4 PF04669.13 EME71666.1 - 0.15 11.6 0.0 0.16 11.5 0.0 1.0 1 0 0 1 1 1 0 Polysaccharide biosynthesis Glycos_transf_2 PF00535.26 EME71667.1 - 4.2e-26 91.7 0.0 6.3e-26 91.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 EME71667.1 - 3.9e-09 36.7 0.0 6.9e-09 35.9 0.0 1.4 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 EME71667.1 - 0.11 11.9 0.0 0.15 11.5 0.0 1.1 1 0 0 1 1 1 0 Glycosyltransferase like family 2 Hemerythrin PF01814.23 EME71668.1 - 9.6e-14 52.1 1.3 1e-13 52.0 1.3 1.1 1 0 0 1 1 1 1 Hemerythrin HHE cation binding domain LigB PF02900.18 EME71669.1 - 9.2e-34 116.7 0.0 1.2e-33 116.4 0.0 1.1 1 0 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase LysR_substrate PF03466.20 EME71670.1 - 1.4e-49 168.3 2.9 1.4e-49 168.3 2.9 1.8 2 0 0 2 2 2 1 LysR substrate binding domain HTH_1 PF00126.27 EME71670.1 - 9.8e-21 73.5 1.2 1.6e-20 72.8 1.2 1.4 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_20 PF12840.7 EME71670.1 - 0.011 15.7 0.2 0.037 14.1 0.2 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain MarR_2 PF12802.7 EME71670.1 - 0.021 14.7 2.6 0.035 14.0 0.2 2.5 3 0 0 3 3 3 0 MarR family VirD1 PF07328.11 EME71670.1 - 0.053 13.5 0.1 0.11 12.5 0.1 1.4 1 0 0 1 1 1 0 T-DNA border endonuclease VirD1 Sel1 PF08238.12 EME71671.1 - 1.9e-09 37.9 12.5 0.00013 22.6 1.6 3.7 3 0 0 3 3 3 2 Sel1 repeat SPOR PF05036.13 EME71671.1 - 6.6e-09 36.0 0.0 1.8e-08 34.7 0.0 1.8 1 0 0 1 1 1 1 Sporulation related domain ThiC_Rad_SAM PF01964.18 EME71672.1 - 2.3e-198 659.2 0.0 2.7e-198 658.9 0.0 1.1 1 0 0 1 1 1 1 Radical SAM ThiC family ThiC-associated PF13667.6 EME71672.1 - 8.1e-30 102.5 0.0 2.1e-29 101.1 0.0 1.8 1 0 0 1 1 1 1 ThiC-associated domain Pentapeptide PF00805.22 EME71673.1 - 3.6e-49 163.9 28.6 1.4e-12 46.9 1.0 5.9 1 1 5 6 6 6 6 Pentapeptide repeats (8 copies) Pentapeptide_3 PF13576.6 EME71673.1 - 1.2e-25 89.4 4.1 4.2e-05 23.6 0.0 5.3 1 1 4 5 5 5 5 Pentapeptide repeats (9 copies) Pentapeptide_4 PF13599.6 EME71673.1 - 3.8e-23 81.4 0.0 2.1e-09 37.4 0.0 3.1 1 1 2 3 3 3 3 Pentapeptide repeats (9 copies) NBD_C PF17042.5 EME71673.1 - 0.072 13.6 1.2 8.1 6.9 0.3 2.8 1 1 2 3 3 3 0 Nucleotide-binding C-terminal domain MCPsignal PF00015.21 EME71674.1 - 7.6e-34 117.0 30.4 7.6e-34 117.0 30.4 4.2 4 1 1 5 5 5 2 Methyl-accepting chemotaxis protein (MCP) signalling domain Hemerythrin PF01814.23 EME71674.1 - 1.4e-13 51.6 0.7 1.4e-13 51.6 0.7 4.7 7 1 0 7 7 7 1 Hemerythrin HHE cation binding domain HAMP PF00672.25 EME71674.1 - 1.7e-08 34.7 0.1 1.7e-08 34.7 0.1 3.4 3 1 0 3 3 3 1 HAMP domain DUF1664 PF07889.12 EME71674.1 - 0.013 15.5 21.8 0.31 11.1 2.6 4.7 2 2 2 4 4 4 0 Protein of unknown function (DUF1664) Dor1 PF04124.12 EME71674.1 - 0.041 12.6 8.8 0.54 8.9 1.9 2.9 2 0 0 2 2 2 0 Dor1-like family DUF948 PF06103.11 EME71674.1 - 0.31 11.3 33.6 0.83 10.0 5.2 6.2 2 2 4 6 6 6 0 Bacterial protein of unknown function (DUF948) TACC_C PF05010.14 EME71674.1 - 1.3 8.7 19.9 0.24 11.2 3.1 3.4 2 1 0 2 2 2 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal Laminin_II PF06009.12 EME71674.1 - 2.5 8.1 39.4 1.4 9.0 9.2 5.6 2 2 3 5 5 5 0 Laminin Domain II BLOC1_2 PF10046.9 EME71674.1 - 2.5 8.4 19.7 9.2 6.6 0.5 5.5 3 2 2 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Prominin PF05478.11 EME71674.1 - 3 5.7 14.8 1.3 6.8 2.5 2.4 1 1 1 2 2 2 0 Prominin IFT57 PF10498.9 EME71674.1 - 3.5 6.5 16.6 1.2 8.0 2.9 2.8 2 1 0 2 2 2 0 Intra-flagellar transport protein 57 SNARE PF05739.19 EME71674.1 - 4.4 7.4 6.5 23 5.1 0.0 4.1 3 0 0 3 3 3 0 SNARE domain Glyco_hydro_1 PF00232.18 EME71675.1 - 6.8e-145 482.9 0.0 8.6e-145 482.6 0.0 1.0 1 0 0 1 1 1 1 Glycosyl hydrolase family 1 Cellulase PF00150.18 EME71675.1 - 0.11 11.9 0.0 0.2 11.0 0.0 1.3 1 0 0 1 1 1 0 Cellulase (glycosyl hydrolase family 5) Acylphosphatase PF00708.18 EME71676.1 - 4.2e-22 78.4 0.0 4.7e-22 78.2 0.0 1.0 1 0 0 1 1 1 1 Acylphosphatase Rhodanese PF00581.20 EME71678.1 - 4.5e-14 52.9 0.0 5.6e-14 52.6 0.0 1.1 1 0 0 1 1 1 1 Rhodanese-like domain Na_H_Exchanger PF00999.21 EME71679.1 - 3.3e-46 157.8 45.7 4.1e-46 157.5 45.7 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family CorC_HlyC PF03471.17 EME71679.1 - 0.00019 21.4 0.0 0.00036 20.5 0.0 1.5 1 0 0 1 1 1 1 Transporter associated domain DAP_epimerase PF01678.19 EME71680.1 - 5.2e-52 175.1 0.2 1.2e-24 86.8 0.0 2.0 2 0 0 2 2 2 2 Diaminopimelate epimerase PhzC-PhzF PF02567.16 EME71680.1 - 0.033 13.7 0.0 0.91 8.9 0.0 2.2 2 0 0 2 2 2 0 Phenazine biosynthesis-like protein DHODB_Fe-S_bind PF10418.9 EME71680.1 - 0.16 11.8 1.5 0.34 10.7 1.5 1.5 1 0 0 1 1 1 0 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Radical_SAM PF04055.21 EME71681.1 - 1.5e-24 87.3 0.0 1.1e-23 84.5 0.0 2.3 2 1 1 3 3 3 1 Radical SAM superfamily UPF0004 PF00919.20 EME71681.1 - 1.8e-17 63.2 0.2 1.8e-16 60.0 0.1 2.4 2 0 0 2 2 2 1 Uncharacterized protein family UPF0004 B12-binding PF02310.19 EME71681.1 - 0.0081 16.2 0.2 0.053 13.6 0.0 2.4 2 0 0 2 2 2 1 B12 binding domain Lipase_GDSL_2 PF13472.6 EME71681.1 - 0.11 12.9 0.2 1.2 9.5 0.2 2.6 1 1 0 1 1 1 0 GDSL-like Lipase/Acylhydrolase family SRP54 PF00448.22 EME71682.1 - 2.5e-70 236.1 0.8 3.3e-70 235.7 0.8 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.19 EME71682.1 - 1e-10 41.6 1.9 1.5e-10 41.2 1.1 1.6 2 0 0 2 2 1 1 SRP54-type protein, helical bundle domain AAA_30 PF13604.6 EME71682.1 - 1.4e-07 31.4 1.4 1.4e-07 31.4 1.4 1.5 2 0 0 2 2 1 1 AAA domain cobW PF02492.19 EME71682.1 - 5.2e-05 22.9 2.1 0.00012 21.7 2.1 1.6 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_17 PF13207.6 EME71682.1 - 5.5e-05 23.6 0.3 0.00018 21.9 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 EME71682.1 - 8.4e-05 22.9 0.1 0.00022 21.5 0.0 1.7 2 0 0 2 2 1 1 AAA domain Zeta_toxin PF06414.12 EME71682.1 - 0.00014 21.2 0.1 0.00033 20.0 0.1 1.6 1 1 0 1 1 1 1 Zeta toxin AAA_16 PF13191.6 EME71682.1 - 0.00017 22.0 0.8 0.00029 21.3 0.3 1.7 1 1 1 2 2 2 1 AAA ATPase domain AAA_19 PF13245.6 EME71682.1 - 0.00091 19.6 0.2 0.0016 18.8 0.2 1.4 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 EME71682.1 - 0.0053 16.8 0.0 0.018 15.1 0.0 1.9 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA PF00004.29 EME71682.1 - 0.0063 16.9 0.0 0.012 16.0 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 EME71682.1 - 0.0067 16.6 0.9 0.017 15.3 0.5 1.9 2 1 0 2 2 2 1 AAA domain ATP_bind_1 PF03029.17 EME71682.1 - 0.0069 16.2 0.8 0.082 12.7 0.6 2.1 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein APS_kinase PF01583.20 EME71682.1 - 0.0072 16.2 0.0 0.014 15.3 0.0 1.5 1 0 0 1 1 1 1 Adenylylsulphate kinase MeaB PF03308.16 EME71682.1 - 0.011 14.7 2.4 0.025 13.6 0.7 2.2 1 1 1 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB ABC_tran PF00005.27 EME71682.1 - 0.021 15.3 0.1 0.049 14.1 0.1 1.5 1 1 0 1 1 1 0 ABC transporter Ploopntkinase3 PF18751.1 EME71682.1 - 0.031 14.2 0.1 6.5 6.6 0.0 2.4 2 0 0 2 2 2 0 P-loop Nucleotide Kinase3 DEK_C PF08766.11 EME71682.1 - 0.033 14.1 2.0 0.062 13.2 1.6 1.7 2 0 0 2 2 1 0 DEK C terminal domain NTPase_1 PF03266.15 EME71682.1 - 0.039 13.9 1.0 0.36 10.7 0.4 2.2 2 0 0 2 2 2 0 NTPase Thymidylate_kin PF02223.17 EME71682.1 - 0.059 13.0 0.1 0.12 12.0 0.1 1.5 1 0 0 1 1 1 0 Thymidylate kinase MobB PF03205.14 EME71682.1 - 0.061 13.2 0.7 0.13 12.2 0.2 1.7 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B NACHT PF05729.12 EME71682.1 - 0.062 13.2 0.7 0.23 11.3 0.2 2.0 2 0 0 2 2 2 0 NACHT domain AAA_23 PF13476.6 EME71682.1 - 0.063 13.8 0.1 0.15 12.5 0.0 1.6 2 0 0 2 2 1 0 AAA domain FtsK_SpoIIIE PF01580.18 EME71682.1 - 0.075 12.4 0.1 0.17 11.2 0.0 1.6 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_28 PF13521.6 EME71682.1 - 0.089 13.0 0.1 0.16 12.2 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 EME71682.1 - 0.16 12.0 0.1 0.33 11.0 0.1 1.6 1 1 0 1 1 1 0 AAA domain G-alpha PF00503.20 EME71682.1 - 0.17 11.0 0.0 0.26 10.4 0.0 1.3 1 0 0 1 1 1 0 G-protein alpha subunit AAA_24 PF13479.6 EME71682.1 - 0.19 11.4 0.3 0.39 10.4 0.3 1.6 1 1 0 1 1 1 0 AAA domain AAA_7 PF12775.7 EME71682.1 - 0.21 11.1 0.1 0.35 10.4 0.1 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region MCPsignal PF00015.21 EME71683.1 - 4.5e-32 111.2 27.8 4.5e-32 111.2 27.8 2.7 1 1 1 2 2 2 1 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 EME71683.1 - 0.00099 19.4 9.2 0.0019 18.5 0.6 3.7 3 1 0 3 3 3 1 HAMP domain DUF948 PF06103.11 EME71683.1 - 0.0045 17.2 3.9 0.0045 17.2 3.9 6.2 4 2 1 5 5 4 2 Bacterial protein of unknown function (DUF948) DUF1664 PF07889.12 EME71683.1 - 0.022 14.8 11.1 1.5 8.9 1.3 4.3 4 1 1 5 5 5 0 Protein of unknown function (DUF1664) SKA1 PF07160.12 EME71683.1 - 0.023 14.5 0.6 6.7 6.5 0.2 3.1 3 0 0 3 3 3 0 Spindle and kinetochore-associated protein 1 BMFP PF04380.13 EME71683.1 - 0.034 14.6 7.4 22 5.6 0.1 4.8 4 0 0 4 4 4 0 Membrane fusogenic activity Mer2 PF09074.10 EME71683.1 - 0.056 13.2 1.5 0.14 11.9 1.1 1.8 2 0 0 2 2 2 0 Mer2 BLOC1_2 PF10046.9 EME71683.1 - 0.091 13.1 4.9 8.7 6.7 0.9 4.1 3 1 1 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Apolipoprotein PF01442.18 EME71683.1 - 0.4 10.5 14.6 62 3.4 14.6 3.3 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain AAA_13 PF13166.6 EME71683.1 - 1.6 7.3 6.2 3.1 6.3 6.0 1.5 1 1 0 1 1 1 0 AAA domain Laminin_II PF06009.12 EME71683.1 - 4.1 7.4 20.0 0.73 9.8 0.5 4.1 1 1 3 4 4 4 0 Laminin Domain II GP41 PF00517.17 EME71683.1 - 7.7 6.4 8.0 1.7 8.5 0.1 2.7 3 0 0 3 3 3 0 Retroviral envelope protein PAS_3 PF08447.12 EME71684.1 - 1.8e-11 44.1 0.0 3.1e-11 43.4 0.0 1.3 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 EME71684.1 - 7e-09 35.9 0.0 1.1e-08 35.3 0.0 1.2 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 EME71684.1 - 2.1e-08 34.2 0.0 3.6e-08 33.4 0.0 1.3 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.10 EME71684.1 - 7.4e-07 29.4 0.0 1.2e-06 28.7 0.0 1.3 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 EME71684.1 - 0.0081 16.2 0.0 0.023 14.7 0.0 1.7 1 0 0 1 1 1 1 PAS domain CHAT PF12770.7 EME71685.1 - 3e-49 168.0 0.1 3e-49 168.0 0.1 2.3 4 0 0 4 4 4 1 CHAT domain TPR_12 PF13424.6 EME71685.1 - 4.2e-19 68.6 26.4 1.6e-06 28.3 1.6 6.0 4 1 0 5 5 5 4 Tetratricopeptide repeat TPR_MalT PF17874.1 EME71685.1 - 3.8e-13 49.5 15.5 3.4e-12 46.4 3.5 3.2 1 1 2 3 3 3 3 MalT-like TPR region TPR_10 PF13374.6 EME71685.1 - 1.8e-09 37.2 31.9 8.3e-05 22.3 0.5 8.6 9 0 0 9 9 9 2 Tetratricopeptide repeat TPR_2 PF07719.17 EME71685.1 - 3.4e-09 36.1 21.1 0.047 13.8 0.0 8.3 9 0 0 9 9 9 3 Tetratricopeptide repeat TPR_8 PF13181.6 EME71685.1 - 1.4e-05 24.9 4.9 0.0035 17.5 0.0 4.9 5 0 0 5 5 5 1 Tetratricopeptide repeat TPR_19 PF14559.6 EME71685.1 - 0.00063 20.2 29.7 0.022 15.3 6.1 6.3 3 1 2 6 6 5 2 Tetratricopeptide repeat DUF3856 PF12968.7 EME71685.1 - 0.0018 18.3 2.9 1.5 8.9 0.3 3.5 3 0 0 3 3 3 2 Domain of Unknown Function (DUF3856) TPR_16 PF13432.6 EME71685.1 - 0.0019 18.8 5.3 0.0019 18.8 5.3 9.8 6 4 3 9 9 8 4 Tetratricopeptide repeat TPR_1 PF00515.28 EME71685.1 - 0.0034 17.2 12.3 0.045 13.6 0.1 5.3 6 0 0 6 6 6 1 Tetratricopeptide repeat TPR_14 PF13428.6 EME71685.1 - 0.047 14.5 0.3 0.047 14.5 0.3 11.0 10 1 2 12 12 8 0 Tetratricopeptide repeat ANAPC3 PF12895.7 EME71685.1 - 0.085 13.1 0.9 6 7.2 0.2 3.4 4 0 0 4 4 4 0 Anaphase-promoting complex, cyclosome, subunit 3 TPR_17 PF13431.6 EME71685.1 - 1.1 9.8 4.4 34 5.1 0.1 4.2 4 0 0 4 4 3 0 Tetratricopeptide repeat TPR_11 PF13414.6 EME71685.1 - 1.2 8.9 8.4 5.8 6.7 0.4 4.9 3 1 1 4 4 4 0 TPR repeat SpoIIE PF07228.12 EME71686.1 - 8.1e-26 91.1 0.0 1.8e-25 90.0 0.0 1.5 1 0 0 1 1 1 1 Stage II sporulation protein E (SpoIIE) HAMP PF00672.25 EME71686.1 - 0.046 14.1 0.2 0.12 12.7 0.0 1.8 2 0 0 2 2 2 0 HAMP domain EAL PF00563.20 EME71687.1 - 2.8e-76 256.2 0.0 5.3e-76 255.3 0.0 1.5 1 0 0 1 1 1 1 EAL domain GGDEF PF00990.21 EME71687.1 - 2e-49 167.5 0.0 3e-49 166.9 0.0 1.3 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain PAS_4 PF08448.10 EME71687.1 - 4.1e-19 68.9 1.7 3.6e-08 33.6 0.2 5.1 4 1 0 4 4 4 3 PAS fold PAS PF00989.25 EME71687.1 - 6.8e-15 55.0 0.0 3.3e-06 27.1 0.0 2.9 3 0 0 3 3 3 2 PAS fold PAS_9 PF13426.7 EME71687.1 - 7.7e-13 48.6 0.0 4.2e-05 23.7 0.0 2.8 2 0 0 2 2 2 2 PAS domain PAS_8 PF13188.7 EME71687.1 - 1.4e-10 40.9 0.0 0.00027 20.9 0.0 3.7 3 0 0 3 3 3 2 PAS domain PAS_7 PF12860.7 EME71687.1 - 1.3e-06 28.6 0.0 0.12 12.6 0.0 4.3 3 1 0 3 3 3 2 PAS fold MLTR_LBD PF17765.1 EME71687.1 - 1.7e-05 25.0 3.2 0.08 13.1 0.0 3.3 2 1 1 3 3 3 2 MmyB-like transcription regulator ligand binding domain PAS_10 PF13596.6 EME71687.1 - 0.0013 19.3 0.0 1.1 9.9 0.0 3.2 4 0 0 4 4 4 1 PAS domain DUF5132 PF17195.4 EME71687.1 - 0.035 14.2 1.0 6.2 7.0 0.0 3.4 3 0 0 3 3 3 0 Protein of unknown function (DUF5132) PAS_3 PF08447.12 EME71687.1 - 0.081 13.2 0.0 2.3 8.6 0.0 2.6 2 0 0 2 2 2 0 PAS fold HATPase_c PF02518.26 EME71688.1 - 1.3e-07 32.1 0.0 2.8e-07 31.0 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 2CSK_N PF08521.10 EME71688.1 - 0.00012 22.2 1.6 0.00033 20.8 1.6 1.7 1 0 0 1 1 1 1 Two-component sensor kinase N-terminal HAMP PF00672.25 EME71688.1 - 0.0035 17.7 0.8 0.032 14.6 0.1 2.8 2 0 0 2 2 2 1 HAMP domain HATPase_c_2 PF13581.6 EME71688.1 - 0.0044 17.0 0.3 0.21 11.5 0.1 2.5 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain Response_reg PF00072.24 EME71689.1 - 4.6e-26 91.2 0.0 1.1e-25 90.0 0.0 1.6 2 0 0 2 2 2 1 Response regulator receiver domain Trans_reg_C PF00486.28 EME71689.1 - 9.1e-23 80.1 0.1 2.5e-22 78.8 0.0 1.7 2 0 0 2 2 2 1 Transcriptional regulatory protein, C terminal MarR_2 PF12802.7 EME71689.1 - 0.013 15.4 0.0 0.047 13.6 0.0 2.0 1 1 0 1 1 1 0 MarR family PepSY PF03413.19 EME71690.1 - 3.6e-06 27.4 0.0 4.6e-06 27.1 0.0 1.2 1 0 0 1 1 1 1 Peptidase propeptide and YPEB domain AbiEi_4 PF13338.6 EME71690.1 - 0.00061 19.9 4.6 0.23 11.6 0.1 2.4 2 1 0 2 2 2 2 Transcriptional regulator, AbiEi antitoxin PepSY_2 PF13670.6 EME71690.1 - 0.0031 17.5 0.0 0.011 15.7 0.0 1.8 1 1 0 1 1 1 1 Peptidase propeptide and YPEB domain DUF1924 PF09086.11 EME71692.1 - 7.5e-37 125.6 0.2 1e-36 125.2 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1924) Ni_hydr_CYTB PF01292.20 EME71692.1 - 0.0021 17.7 15.1 0.0084 15.7 15.1 2.0 1 1 0 1 1 1 1 Prokaryotic cytochrome b561 Peptidase_U4 PF03419.13 EME71692.1 - 0.016 14.5 2.8 0.021 14.1 1.6 1.6 1 1 0 1 1 1 0 Sporulation factor SpoIIGA CCP_MauG PF03150.14 EME71692.1 - 0.025 15.2 0.0 0.04 14.6 0.0 1.3 1 0 0 1 1 1 0 Di-haem cytochrome c peroxidase Cytochrome_P460 PF16694.5 EME71692.1 - 0.15 12.4 0.0 0.26 11.7 0.0 1.3 1 0 0 1 1 1 0 Cytochrome P460 DUF4405 PF14358.6 EME71692.1 - 2 9.0 14.3 1 10.0 4.3 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF4405) DUF4079 PF13301.6 EME71692.1 - 5.5 7.1 11.7 1 9.5 1.0 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF4079) DHC PF09626.10 EME71693.1 - 6.5e-37 127.0 0.0 7.6e-37 126.8 0.0 1.1 1 0 0 1 1 1 1 Dihaem cytochrome c Cytochrom_NNT PF03264.14 EME71693.1 - 0.00055 19.7 0.1 0.0098 15.6 0.0 2.0 2 0 0 2 2 2 1 NapC/NirT cytochrome c family, N-terminal region Cytochrome_C7 PF14522.6 EME71693.1 - 0.0056 16.6 0.1 1.6 8.8 0.0 2.2 2 0 0 2 2 2 2 Cytochrome c7 and related cytochrome c GSu_C4xC__C2xCH PF09698.10 EME71693.1 - 0.022 15.5 0.5 10 7.0 0.1 2.4 2 0 0 2 2 2 0 Geobacter CxxxxCH...CXXCH motif (GSu_C4xC__C2xCH) SH3_4 PF06347.13 EME71694.1 - 1e-24 86.1 1.6 4.8e-17 61.5 0.4 2.2 2 0 0 2 2 2 2 Bacterial SH3 domain SH3_3 PF08239.11 EME71694.1 - 1e-05 25.7 1.2 0.00019 21.6 1.5 2.6 2 1 0 2 2 2 1 Bacterial SH3 domain SH3_2 PF07653.17 EME71694.1 - 0.011 15.4 0.2 3 7.6 0.1 2.3 2 0 0 2 2 2 0 Variant SH3 domain 2-Hacid_dh_C PF02826.19 EME71695.1 - 7.7e-59 198.0 0.0 1.7e-58 196.9 0.0 1.5 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 EME71695.1 - 1.3e-32 112.2 0.0 1.6e-32 111.9 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 EME71695.1 - 4.2e-05 23.8 0.0 7.8e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 EME71695.1 - 0.0018 18.8 0.0 0.025 15.2 0.0 2.7 3 0 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.12 EME71695.1 - 0.0086 15.7 0.0 0.3 10.6 0.0 2.3 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain GFO_IDH_MocA PF01408.22 EME71695.1 - 0.064 14.1 0.1 0.2 12.5 0.1 1.8 1 1 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold LTXXQ PF07813.12 EME71696.1 - 1.1e-19 71.1 8.6 1.1e-19 71.1 8.6 1.6 1 1 1 2 2 2 1 LTXXQ motif family protein BBIP10 PF14777.6 EME71696.1 - 0.011 15.3 0.6 0.018 14.6 0.6 1.4 1 0 0 1 1 1 0 Cilia BBSome complex subunit 10 ISN1 PF06437.11 EME71696.1 - 0.074 11.9 0.0 0.08 11.8 0.0 1.1 1 0 0 1 1 1 0 IMP-specific 5'-nucleotidase Metal_resist PF13801.6 EME71696.1 - 5 7.3 13.0 16 5.7 8.4 2.8 1 1 1 2 2 2 0 Heavy-metal resistance DrsE_2 PF13686.6 EME71697.1 - 6.4e-14 52.1 0.1 1.2e-11 44.8 0.1 2.0 1 1 0 1 1 1 1 DsrE/DsrF/DrsH-like family DrsE PF02635.15 EME71697.1 - 1.2e-07 32.1 0.0 1.8e-07 31.5 0.0 1.3 1 1 0 1 1 1 1 DsrE/DsrF-like family DUF3390 PF11870.8 EME71697.1 - 0.15 12.4 0.0 0.18 12.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3390) ThiF PF00899.21 EME71698.1 - 1.4e-59 201.4 0.0 1.7e-59 201.1 0.0 1.0 1 0 0 1 1 1 1 ThiF family PglD_N PF17836.1 EME71698.1 - 0.022 15.4 1.1 0.048 14.3 0.7 1.9 1 1 1 2 2 2 0 PglD N-terminal domain ApbA PF02558.16 EME71698.1 - 0.041 13.5 0.1 0.062 12.9 0.1 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Sacchrp_dh_NADP PF03435.18 EME71698.1 - 0.069 13.4 0.4 0.12 12.7 0.4 1.6 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain PALP PF00291.25 EME71699.1 - 2.1e-64 217.8 2.1 2.4e-64 217.6 2.1 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Rrf2 PF02082.20 EME71700.1 - 2.7e-23 82.1 0.1 3.9e-23 81.6 0.1 1.2 1 0 0 1 1 1 1 Transcriptional regulator MarR_2 PF12802.7 EME71700.1 - 5.7e-05 22.9 0.7 0.00069 19.5 0.1 2.3 2 0 0 2 2 2 1 MarR family HrcA_DNA-bdg PF03444.15 EME71700.1 - 0.00084 19.0 0.1 0.0013 18.3 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_20 PF12840.7 EME71700.1 - 0.0039 17.2 0.2 0.014 15.5 0.0 2.0 3 0 0 3 3 3 1 Helix-turn-helix domain TrmB PF01978.19 EME71700.1 - 0.036 13.9 0.1 0.079 12.8 0.0 1.5 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF2250 PF10007.9 EME71700.1 - 0.12 12.5 0.0 0.31 11.2 0.0 1.7 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) PanZ PF12568.8 EME71700.1 - 0.15 11.8 0.3 0.27 10.9 0.3 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain, PanZ dUTPase PF00692.19 EME71701.1 - 3.2e-30 104.5 0.0 3.7e-30 104.2 0.0 1.0 1 0 0 1 1 1 1 dUTPase DFP PF04127.15 EME71702.1 - 1.1e-67 227.5 0.1 2.1e-67 226.6 0.0 1.5 2 0 0 2 2 2 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.19 EME71702.1 - 1.3e-43 148.5 0.0 2.1e-43 147.8 0.0 1.3 1 0 0 1 1 1 1 Flavoprotein Glyco_trans_4_4 PF13579.6 EME71702.1 - 0.00031 21.2 4.0 0.025 15.0 0.9 2.9 2 1 0 2 2 2 2 Glycosyl transferase 4-like domain Mur_ligase PF01225.25 EME71702.1 - 0.087 13.2 0.1 0.24 11.7 0.1 1.8 1 0 0 1 1 1 0 Mur ligase family, catalytic domain Glyco_transf_4 PF13439.6 EME71702.1 - 0.14 12.1 0.1 21 5.1 0.0 3.2 3 0 0 3 3 3 0 Glycosyltransferase Family 4 Cpn60_TCP1 PF00118.24 EME71703.1 - 5.2e-99 332.1 15.3 8e-99 331.5 15.3 1.3 1 1 0 1 1 1 1 TCP-1/cpn60 chaperonin family Cpn10 PF00166.21 EME71704.1 - 8.1e-36 122.0 0.1 8.9e-36 121.8 0.1 1.0 1 0 0 1 1 1 1 Chaperonin 10 Kd subunit DUF2076 PF09849.9 EME71705.1 - 2.1e-48 165.7 12.1 2.6e-48 165.4 12.1 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2076) Spt20 PF12090.8 EME71705.1 - 0.051 13.2 1.4 0.064 12.9 1.4 1.1 1 0 0 1 1 1 0 Spt20 family DUF1178 PF06676.11 EME71706.1 - 1.7e-21 77.1 0.0 2e-21 77.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1178) Zn-ribbon_8 PF09723.10 EME71706.1 - 0.00069 19.7 0.4 0.00069 19.7 0.4 2.5 2 2 0 2 2 2 1 Zinc ribbon domain Anti-TRAP PF15777.5 EME71706.1 - 0.037 14.0 0.4 0.037 14.0 0.4 2.0 1 1 1 2 2 2 0 Tryptophan RNA-binding attenuator protein inhibitory protein Oxidored_q6 PF01058.22 EME71707.1 - 3e-29 101.5 0.1 3.9e-29 101.1 0.1 1.1 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Complex1_49kDa PF00346.19 EME71708.1 - 3.3e-39 134.6 0.0 3.4e-33 114.9 0.0 2.2 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.19 EME71708.1 - 3.2e-06 26.3 0.1 7e-06 25.2 0.0 1.5 2 0 0 2 2 2 1 Nickel-dependent hydrogenase Complex1_30kDa PF00329.19 EME71708.1 - 0.41 11.3 2.2 0.41 11.3 0.2 1.9 1 1 1 2 2 2 0 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Proton_antipo_M PF00361.20 EME71709.1 - 1.2e-52 179.0 22.1 2.5e-52 177.9 22.1 1.5 1 0 0 1 1 1 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 EME71709.1 - 0.18 11.9 2.5 0.41 10.7 0.7 2.6 2 0 0 2 2 2 0 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DUF4818 PF16089.5 EME71710.1 - 0.038 14.5 7.0 0.088 13.3 6.9 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4818) NADHdh PF00146.21 EME71711.1 - 2.9e-31 108.9 20.2 3.5e-31 108.6 20.2 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Proton_antipo_M PF00361.20 EME71712.1 - 8.9e-52 176.1 19.3 8.9e-52 176.1 19.3 2.9 2 1 1 3 3 3 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 EME71712.1 - 0.0013 18.7 0.0 0.0013 18.7 0.0 3.6 6 0 0 6 6 6 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DUF962 PF06127.11 EME71712.1 - 0.0071 16.4 0.0 3 8.0 0.0 4.3 3 1 1 4 4 4 1 Protein of unknown function (DUF962) DUF1378 PF07125.11 EME71712.1 - 0.26 11.5 0.1 0.26 11.5 0.1 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF1378) GARS_A PF01071.19 EME71713.1 - 9.3e-78 260.5 0.1 1.6e-77 259.7 0.1 1.4 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.15 EME71713.1 - 1.2e-35 122.2 0.1 3.7e-35 120.6 0.1 1.9 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.16 EME71713.1 - 2.7e-27 94.8 1.1 9.4e-27 93.1 1.1 2.0 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_3 PF02655.14 EME71713.1 - 4.6e-05 23.5 0.0 9.7e-05 22.5 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp PF02222.22 EME71713.1 - 0.0044 16.6 0.0 0.013 15.1 0.0 1.7 2 0 0 2 2 2 1 ATP-grasp domain CPSase_L_D2 PF02786.17 EME71713.1 - 0.0075 15.8 0.1 0.015 14.8 0.1 1.5 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain RimK PF08443.11 EME71713.1 - 0.039 13.5 0.0 0.1 12.2 0.0 1.7 1 0 0 1 1 1 0 RimK-like ATP-grasp domain LAL_C2 PF18603.1 EME71713.1 - 0.096 12.9 4.0 0.59 10.3 2.3 2.6 2 0 0 2 2 2 0 L-amino acid ligase C-terminal domain 2 Exonuc_VII_L PF02601.15 EME71714.1 - 1.5e-94 317.0 0.2 1.8e-93 313.5 0.2 2.0 1 1 0 1 1 1 1 Exonuclease VII, large subunit tRNA_anti_2 PF13742.6 EME71714.1 - 5.4e-27 93.8 0.0 1e-26 93.0 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti-codon PF01336.25 EME71714.1 - 5.5e-09 35.9 0.0 1.1e-08 35.0 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain Spc7 PF08317.11 EME71714.1 - 0.012 14.5 0.3 0.017 14.0 0.3 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein DUF1704 PF08014.11 EME71714.1 - 0.022 13.8 0.6 0.032 13.3 0.6 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1704) RecJ_OB PF17768.1 EME71714.1 - 0.034 14.4 0.0 0.064 13.5 0.0 1.4 1 0 0 1 1 1 0 RecJ OB domain UPF0126 PF03458.13 EME71714.1 - 0.086 12.7 0.3 0.59 10.1 0.0 2.2 2 0 0 2 2 2 0 UPF0126 domain PRKG1_interact PF15898.5 EME71714.1 - 0.12 13.2 1.1 0.31 11.9 1.1 1.6 1 0 0 1 1 1 0 cGMP-dependent protein kinase interacting domain ERM PF00769.19 EME71714.1 - 0.74 9.6 10.1 1.3 8.8 10.1 1.3 1 0 0 1 1 1 0 Ezrin/radixin/moesin family Stimulus_sens_1 PF13756.6 EME71715.1 - 2.9e-30 105.1 0.9 8.4e-30 103.6 0.3 2.2 2 0 0 2 2 2 1 Stimulus-sensing domain HATPase_c PF02518.26 EME71715.1 - 2.4e-22 79.5 0.0 5.8e-22 78.3 0.0 1.7 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Sensor_TM1 PF13755.6 EME71715.1 - 1e-17 63.6 0.1 3.3e-17 62.0 0.1 1.9 1 0 0 1 1 1 1 Sensor N-terminal transmembrane domain HisKA PF00512.25 EME71715.1 - 1e-12 47.9 0.3 2.8e-12 46.5 0.3 1.8 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HAMP PF00672.25 EME71715.1 - 8.6e-12 45.3 4.0 3.8e-11 43.2 0.7 2.9 2 0 0 2 2 2 1 HAMP domain HATPase_c_3 PF13589.6 EME71715.1 - 0.084 12.7 0.0 0.15 11.9 0.0 1.3 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.6 EME71715.1 - 0.2 11.6 0.0 0.48 10.4 0.0 1.5 1 0 0 1 1 1 0 GHKL domain Response_reg PF00072.24 EME71716.1 - 5.2e-28 97.5 0.2 7.9e-28 96.9 0.2 1.3 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 EME71716.1 - 1.4e-21 76.3 0.1 3.3e-21 75.1 0.1 1.6 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal CbiM PF01891.16 EME71717.1 - 1.1e-44 152.7 19.3 1.3e-44 152.5 19.3 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region CbiN PF02553.15 EME71718.1 - 3.4e-20 71.8 0.2 4e-20 71.5 0.2 1.1 1 0 0 1 1 1 1 Cobalt transport protein component CbiN DUF4229 PF14012.6 EME71718.1 - 0.058 13.5 0.8 14 5.8 1.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF4229) PEP-CTERM PF07589.11 EME71718.1 - 7.8 6.7 7.4 4 7.7 1.3 2.4 2 0 0 2 2 2 0 PEP-CTERM motif CbiQ PF02361.16 EME71719.1 - 4.8e-43 147.3 3.1 6.3e-43 146.9 3.1 1.1 1 0 0 1 1 1 1 Cobalt transport protein ABC_tran PF00005.27 EME71720.1 - 6.6e-30 104.4 0.0 9e-30 104.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 EME71720.1 - 1.1e-09 38.5 0.9 9.9e-06 25.6 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 EME71720.1 - 0.0013 19.1 1.7 0.0028 18.0 1.6 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_24 PF13479.6 EME71720.1 - 0.016 14.9 0.0 0.063 13.0 0.0 1.8 2 0 0 2 2 2 0 AAA domain SMC_N PF02463.19 EME71720.1 - 0.02 14.3 0.1 5.1 6.5 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_25 PF13481.6 EME71720.1 - 0.048 13.2 2.8 0.47 10.0 0.1 2.9 2 1 0 2 2 2 0 AAA domain AAA_29 PF13555.6 EME71720.1 - 0.056 13.2 0.0 0.11 12.2 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_19 PF13245.6 EME71720.1 - 0.07 13.5 0.0 0.11 12.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 EME71720.1 - 0.08 13.2 0.1 0.16 12.2 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.6 EME71720.1 - 0.083 13.4 0.1 0.12 12.8 0.1 1.2 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 EME71720.1 - 0.12 12.3 0.0 0.22 11.4 0.0 1.4 1 0 0 1 1 1 0 NACHT domain cobW PF02492.19 EME71720.1 - 0.27 10.8 0.3 0.45 10.1 0.3 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Rhodanese PF00581.20 EME71721.1 - 9.5e-10 39.0 0.0 1.2e-09 38.6 0.0 1.1 1 0 0 1 1 1 1 Rhodanese-like domain PIP5K PF01504.18 EME71722.1 - 0.038 13.2 0.0 0.045 13.0 0.0 1.1 1 0 0 1 1 1 0 Phosphatidylinositol-4-phosphate 5-Kinase adh_short_C2 PF13561.6 EME71723.1 - 2.7e-42 144.9 4.1 4.2e-42 144.3 4.1 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 EME71723.1 - 5.3e-39 133.7 0.7 9.1e-39 132.9 0.7 1.3 1 0 0 1 1 1 1 short chain dehydrogenase Aldolase_II PF00596.21 EME71723.1 - 2e-30 106.1 0.0 5.9e-27 94.8 0.0 2.8 2 1 0 2 2 2 2 Class II Aldolase and Adducin N-terminal domain KR PF08659.10 EME71723.1 - 1.8e-08 34.5 0.8 3.2e-08 33.7 0.8 1.4 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.6 EME71723.1 - 2.7e-05 24.2 0.9 5.2e-05 23.2 0.9 1.5 1 0 0 1 1 1 1 NAD(P)H-binding Epimerase PF01370.21 EME71723.1 - 2.9e-05 23.6 0.8 0.00013 21.5 0.8 2.2 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 EME71723.1 - 0.0059 15.7 0.6 0.01 15.0 0.6 1.3 1 0 0 1 1 1 1 RmlD substrate binding domain 3HCDH_N PF02737.18 EME71723.1 - 0.011 15.7 1.0 0.025 14.5 1.0 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3Beta_HSD PF01073.19 EME71723.1 - 0.013 14.5 0.1 0.019 14.0 0.1 1.2 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family HI0933_like PF03486.14 EME71723.1 - 0.07 11.8 1.3 0.14 10.8 1.2 1.5 2 0 0 2 2 2 0 HI0933-like protein SPAR_C PF11881.8 EME71723.1 - 0.1 12.5 0.0 1.3 8.9 0.0 2.0 2 0 0 2 2 2 0 C-terminal domain of SPAR protein Peptidase_M23 PF01551.22 EME71725.1 - 8.2e-28 96.5 0.1 2.8e-27 94.8 0.0 1.8 2 0 0 2 2 2 1 Peptidase family M23 Big_6 PF17936.1 EME71725.1 - 0.012 15.8 0.1 0.047 14.0 0.1 2.1 1 1 0 1 1 1 0 Bacterial Ig domain Pyr_redox_2 PF07992.14 EME71727.1 - 1.5e-16 60.5 0.0 4.5e-15 55.7 0.0 2.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_20 PF14691.6 EME71727.1 - 8.1e-05 22.4 1.1 0.00031 20.5 0.3 2.1 2 0 0 2 2 2 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster FAD_binding_2 PF00890.24 EME71727.1 - 0.009 15.1 0.4 2.4 7.1 0.0 2.7 2 0 0 2 2 2 2 FAD binding domain K_oxygenase PF13434.6 EME71727.1 - 0.014 14.6 0.0 3.3 6.8 0.0 2.9 3 0 0 3 3 3 0 L-lysine 6-monooxygenase (NADPH-requiring) Pyr_redox PF00070.27 EME71727.1 - 0.073 13.6 0.3 20 5.8 0.0 3.0 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 EME71727.1 - 0.097 11.9 0.2 0.22 10.7 0.2 1.5 1 0 0 1 1 1 0 FAD binding domain MutS_V PF00488.21 EME71728.1 - 6.1e-83 277.5 1.1 1.5e-82 276.2 0.0 1.9 2 0 0 2 2 2 1 MutS domain V MutS_I PF01624.20 EME71728.1 - 2.7e-39 133.9 0.0 4.7e-39 133.1 0.0 1.4 1 0 0 1 1 1 1 MutS domain I MutS_III PF05192.18 EME71728.1 - 1.8e-35 122.9 0.0 4e-35 121.8 0.0 1.6 1 0 0 1 1 1 1 MutS domain III MutS_II PF05188.17 EME71728.1 - 1.5e-20 73.9 0.0 3.5e-20 72.7 0.0 1.6 1 0 0 1 1 1 1 MutS domain II MutS_IV PF05190.18 EME71728.1 - 1.9e-19 69.8 0.0 3.1e-19 69.1 0.0 1.4 1 0 0 1 1 1 1 MutS family domain IV AAA_27 PF13514.6 EME71728.1 - 0.0025 17.4 0.0 0.0048 16.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 EME71728.1 - 0.16 11.8 0.0 0.4 10.5 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF2442 PF10387.9 EME71729.1 - 1.5e-15 57.3 0.0 1.6e-15 57.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2442) DUF4160 PF13711.6 EME71730.1 - 7.6e-08 32.6 0.0 1.5e-07 31.6 0.0 1.5 2 0 0 2 2 2 1 Domain of unknown function (DUF4160) YflT PF11181.8 EME71731.1 - 0.018 15.5 0.0 0.028 14.9 0.0 1.3 1 0 0 1 1 1 0 Heat induced stress protein YflT PTA_PTB PF01515.19 EME71732.1 - 2.1e-87 293.4 0.1 3.1e-87 292.9 0.1 1.2 1 0 0 1 1 1 1 Phosphate acetyl/butaryl transferase malic PF00390.19 EME71732.1 - 2.9e-28 98.9 0.0 3.5e-26 92.1 0.0 2.4 1 1 0 1 1 1 1 Malic enzyme, N-terminal domain Malic_M PF03949.15 EME71732.1 - 1.1e-20 74.0 2.4 3.3e-20 72.4 2.4 1.8 1 1 0 1 1 1 1 Malic enzyme, NAD binding domain AlaDh_PNT_C PF01262.21 EME71732.1 - 0.0038 16.5 0.9 0.0088 15.4 0.9 1.6 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain ELFV_dehydrog PF00208.21 EME71732.1 - 0.1 12.3 0.2 0.22 11.2 0.2 1.5 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CW_7 PF08230.11 EME71732.1 - 0.1 12.4 0.6 0.23 11.2 0.6 1.6 1 0 0 1 1 1 0 CW_7 repeat DXP_synthase_N PF13292.6 EME71732.1 - 0.11 11.7 0.3 0.24 10.6 0.3 1.4 1 0 0 1 1 1 0 1-deoxy-D-xylulose-5-phosphate synthase HATPase_c PF02518.26 EME71733.1 - 4.4e-26 91.6 0.0 7e-26 90.9 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 EME71733.1 - 9.7e-17 60.8 2.5 1.6e-16 60.1 0.2 2.4 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.7 EME71733.1 - 6.7e-08 32.4 0.4 6e-07 29.3 0.0 2.5 2 0 0 2 2 2 1 PAS domain HATPase_c_2 PF13581.6 EME71733.1 - 0.00015 21.8 0.0 0.00031 20.7 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS PF00989.25 EME71733.1 - 0.00017 21.6 0.0 0.00036 20.5 0.0 1.5 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.10 EME71733.1 - 0.00022 21.4 0.6 0.00088 19.5 0.1 2.3 2 1 0 2 2 2 1 PAS fold HATPase_c_5 PF14501.6 EME71733.1 - 0.0052 16.7 0.0 1.3 9.0 0.0 2.2 2 0 0 2 2 2 2 GHKL domain HATPase_c_3 PF13589.6 EME71733.1 - 0.25 11.2 0.0 0.46 10.3 0.0 1.3 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MFS_1 PF07690.16 EME71734.1 - 6.5e-47 160.2 90.0 2.6e-44 151.6 51.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 EME71734.1 - 1.8e-10 40.3 36.0 2e-10 40.2 11.3 2.4 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_2 PF13347.6 EME71734.1 - 5.9e-08 31.7 27.0 8.9e-07 27.8 19.3 2.3 1 1 1 2 2 2 2 MFS/sugar transport protein TRI12 PF06609.13 EME71734.1 - 6.5e-05 21.5 3.1 6.5e-05 21.5 3.1 2.2 2 0 0 2 2 2 1 Fungal trichothecene efflux pump (TRI12) BT1 PF03092.16 EME71734.1 - 0.00028 19.3 2.7 0.00028 19.3 2.7 2.4 2 1 0 2 2 2 1 BT1 family MFS_3 PF05977.13 EME71734.1 - 0.002 16.6 28.0 0.0033 15.9 28.0 1.3 1 1 0 1 1 1 1 Transmembrane secretion effector 7TM_GPCR_Sri PF10327.9 EME71734.1 - 0.03 13.5 1.1 0.089 12.0 0.4 2.1 1 1 0 1 1 1 0 Serpentine type 7TM GPCR chemoreceptor Sri UL42 PF17638.2 EME71734.1 - 0.2 11.6 0.7 0.57 10.2 0.4 1.9 2 0 0 2 2 2 0 HCMV UL42 DUF4381 PF14316.6 EME71734.1 - 5.7 7.2 5.4 0.51 10.6 0.6 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4381) DUF45 PF01863.17 EME71735.1 - 4.7e-48 164.0 0.0 5.4e-48 163.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF45 GATase_3 PF07685.14 EME71736.1 - 1.2e-56 191.5 0.0 1.6e-56 191.1 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain AAA_26 PF13500.6 EME71736.1 - 2.6e-19 69.8 0.0 5.3e-19 68.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 EME71736.1 - 1.1e-18 67.5 0.0 1.7e-18 66.9 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain BPL_N PF09825.9 EME71736.1 - 0.07 12.2 0.0 0.11 11.6 0.0 1.1 1 0 0 1 1 1 0 Biotin-protein ligase, N terminal CobD_Cbib PF03186.13 EME71737.1 - 5.8e-95 317.7 0.4 6.7e-95 317.4 0.4 1.0 1 0 0 1 1 1 1 CobD/Cbib protein FA_desaturase PF00487.24 EME71737.1 - 0.0084 16.0 0.1 0.0084 16.0 0.1 2.4 1 1 1 3 3 3 1 Fatty acid desaturase CbiX PF01903.17 EME71738.1 - 2.3e-47 159.8 0.0 2.2e-23 82.6 0.0 2.2 2 0 0 2 2 2 2 CbiX CbiK PF06180.11 EME71738.1 - 3.7e-05 23.2 0.0 0.25 10.6 0.0 2.2 2 0 0 2 2 2 2 Cobalt chelatase (CbiK) Ferrochelatase PF00762.19 EME71738.1 - 0.0011 18.1 0.0 1 8.4 0.0 2.2 2 0 0 2 2 2 2 Ferrochelatase SelP_N PF04592.14 EME71738.1 - 1 8.7 10.5 1.5 8.2 10.5 1.2 1 0 0 1 1 1 0 Selenoprotein P, N terminal region CbiC PF02570.15 EME71739.1 - 8.5e-67 224.6 0.9 1e-66 224.4 0.9 1.0 1 0 0 1 1 1 1 Precorrin-8X methylmutase RelB_leu_zip PF16180.5 EME71739.1 - 0.049 13.6 0.1 0.48 10.5 0.0 2.2 2 0 0 2 2 2 0 RelB leucine zipper TP_methylase PF00590.20 EME71740.1 - 1.3e-15 57.9 2.9 2.4e-15 57.0 2.9 1.4 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Methyltransf_25 PF13649.6 EME71740.1 - 0.00026 21.6 0.0 0.00053 20.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 EME71740.1 - 0.0082 16.8 0.0 0.018 15.7 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltr_RsmB-F PF01189.17 EME71740.1 - 0.0087 15.7 0.0 0.017 14.7 0.0 1.5 1 1 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Cons_hypoth95 PF03602.15 EME71740.1 - 0.033 13.8 0.0 0.049 13.3 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Methyltransf_31 PF13847.6 EME71740.1 - 0.04 13.7 0.0 0.061 13.1 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain TP_methylase PF00590.20 EME71741.1 - 2.7e-45 154.9 1.8 3.3e-45 154.6 1.8 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases TP_methylase PF00590.20 EME71742.1 - 2.4e-34 119.1 0.6 2.4e-34 119.1 0.6 1.9 2 0 0 2 2 2 1 Tetrapyrrole (Corrin/Porphyrin) Methylases CbiG_C PF01890.16 EME71742.1 - 5.9e-29 101.0 5.0 1.7e-28 99.5 5.0 1.8 1 0 0 1 1 1 1 Cobalamin synthesis G C-terminus CbiG_N PF11760.8 EME71742.1 - 1.1e-25 89.4 0.2 3.3e-25 87.9 0.2 1.9 1 0 0 1 1 1 1 Cobalamin synthesis G N-terminal CbiG_mid PF11761.8 EME71742.1 - 0.00069 19.7 0.0 0.0021 18.1 0.0 1.9 1 0 0 1 1 1 1 Cobalamin biosynthesis central region Peptidase_M48 PF01435.18 EME71743.1 - 3e-33 115.2 0.0 5.1e-33 114.5 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M48 LysM PF01476.20 EME71743.1 - 0.0011 19.0 0.0 0.0022 18.0 0.0 1.5 1 0 0 1 1 1 1 LysM domain ApbA PF02558.16 EME71743.1 - 0.022 14.4 0.0 0.074 12.7 0.0 1.8 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA NUDIX PF00293.28 EME71744.1 - 5.9e-23 81.4 0.0 7.1e-23 81.1 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain Polysacc_deac_2 PF04748.13 EME71745.1 - 8.3e-37 126.4 0.0 1.2e-36 125.9 0.0 1.3 1 0 0 1 1 1 1 Divergent polysaccharide deacetylase Peptidase_S41 PF03572.18 EME71746.1 - 1.2e-55 187.6 0.0 1.6e-55 187.2 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S41 PDZ_6 PF17820.1 EME71746.1 - 1.3e-13 50.5 0.0 3.5e-13 49.2 0.0 1.8 1 0 0 1 1 1 1 PDZ domain PDZ_2 PF13180.6 EME71746.1 - 1.5e-12 47.7 0.0 2.8e-12 46.8 0.0 1.5 1 0 0 1 1 1 1 PDZ domain PDZ PF00595.24 EME71746.1 - 2.2e-06 27.9 0.0 5.1e-06 26.8 0.0 1.7 1 0 0 1 1 1 1 PDZ domain TSP_NTD PF17804.1 EME71746.1 - 0.00064 20.0 0.0 0.00093 19.5 0.0 1.2 1 0 0 1 1 1 1 Tail specific protease N-terminal domain Peptidase_M23 PF01551.22 EME71747.1 - 8.4e-21 74.0 0.0 1.4e-20 73.3 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M23 KASH_CCD PF14662.6 EME71747.1 - 0.0017 18.3 1.9 0.0017 18.3 1.9 3.3 2 1 0 3 3 3 2 Coiled-coil region of CCDC155 or KASH Nsp1_C PF05064.13 EME71747.1 - 0.59 9.9 7.0 1.7 8.5 0.9 2.7 2 0 0 2 2 2 0 Nsp1-like C-terminal region GREB1 PF15782.5 EME71747.1 - 2.5 5.1 11.0 3.4 4.7 11.0 1.1 1 0 0 1 1 1 0 Gene regulated by oestrogen in breast cancer Metalloenzyme PF01676.18 EME71748.1 - 4.2e-57 193.4 0.0 4.2e-57 193.4 0.0 1.1 1 0 0 1 1 1 1 Metalloenzyme superfamily iPGM_N PF06415.13 EME71748.1 - 1.3e-47 162.0 0.0 1.8e-47 161.6 0.0 1.2 1 0 0 1 1 1 1 BPG-independent PGAM N-terminus (iPGM_N) Phosphodiest PF01663.22 EME71748.1 - 0.00068 19.3 0.0 0.001 18.7 0.0 1.5 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Peptidase_M23 PF01551.22 EME71749.1 - 1.9e-28 98.5 0.7 4.2e-28 97.4 0.7 1.6 1 0 0 1 1 1 1 Peptidase family M23 LysM PF01476.20 EME71749.1 - 1e-25 89.5 0.0 7.6e-12 45.1 0.0 2.4 2 0 0 2 2 2 2 LysM domain Biotin_lipoyl_2 PF13533.6 EME71749.1 - 0.015 15.1 0.1 0.18 11.6 0.1 2.4 2 0 0 2 2 2 0 Biotin-lipoyl like RnfC_N PF13375.6 EME71749.1 - 0.02 14.8 0.1 0.085 12.8 0.0 2.1 2 0 0 2 2 2 0 RnfC Barrel sandwich hybrid domain Biotin_lipoyl PF00364.22 EME71749.1 - 0.024 14.5 0.3 0.19 11.6 0.0 2.5 3 0 0 3 3 3 0 Biotin-requiring enzyme ChapFlgA PF13144.6 EME71749.1 - 0.028 14.5 0.7 0.48 10.5 0.0 2.9 3 1 1 4 4 4 0 Chaperone for flagella basal body P-ring formation PCMT PF01135.19 EME71750.1 - 1e-57 195.3 0.0 1.2e-57 195.0 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 EME71750.1 - 4.9e-07 29.6 0.0 7.4e-07 29.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 EME71750.1 - 2.1e-06 28.3 0.0 3.4e-06 27.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 EME71750.1 - 3e-06 26.5 0.0 4.2e-06 26.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_11 PF08241.12 EME71750.1 - 2.8e-05 24.7 0.0 6.2e-05 23.6 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain GCD14 PF08704.10 EME71750.1 - 0.0071 16.1 0.0 0.009 15.7 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit NodS PF05401.11 EME71750.1 - 0.017 14.7 0.0 0.029 14.0 0.0 1.4 1 0 0 1 1 1 0 Nodulation protein S (NodS) Methyltr_RsmB-F PF01189.17 EME71750.1 - 0.018 14.7 0.0 0.13 11.9 0.0 2.0 2 0 0 2 2 2 0 16S rRNA methyltransferase RsmB/F Methyltransf_4 PF02390.17 EME71750.1 - 0.029 13.8 0.0 0.05 13.1 0.0 1.4 1 0 0 1 1 1 0 Putative methyltransferase MTS PF05175.14 EME71750.1 - 0.034 13.7 0.0 0.05 13.1 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain DUF938 PF06080.12 EME71750.1 - 0.07 12.9 0.0 0.1 12.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF938) SurE PF01975.17 EME71751.1 - 4.5e-60 202.8 0.0 5.4e-60 202.5 0.0 1.1 1 0 0 1 1 1 1 Survival protein SurE tRNA-synt_2b PF00587.25 EME71752.1 - 1.2e-39 136.1 0.0 1.7e-39 135.6 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.22 EME71752.1 - 3.1e-29 101.4 0.1 4.6e-29 100.8 0.1 1.3 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain Phage_GP20 PF06810.11 EME71752.1 - 0.014 15.2 0.9 0.023 14.5 0.9 1.3 1 0 0 1 1 1 0 Phage minor structural protein GP20 TatC PF00902.18 EME71753.1 - 4.4e-68 229.2 13.5 5.4e-68 228.9 13.5 1.1 1 0 0 1 1 1 1 Sec-independent protein translocase protein (TatC) MttA_Hcf106 PF02416.16 EME71754.1 - 4.7e-05 22.6 0.1 7.1e-05 22.1 0.1 1.4 1 1 0 1 1 1 1 mttA/Hcf106 family MttA_Hcf106 PF02416.16 EME71755.1 - 2.8e-13 49.0 0.1 3e-13 48.9 0.1 1.1 1 0 0 1 1 1 1 mttA/Hcf106 family DUF454 PF04304.13 EME71756.1 - 8.8e-38 128.9 8.0 1e-37 128.7 8.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF454) SMC_ScpB PF04079.16 EME71757.1 - 1.3e-48 164.6 0.0 1.6e-48 164.3 0.0 1.1 1 0 0 1 1 1 1 Segregation and condensation complex subunit ScpB HHH_4 PF14490.6 EME71757.1 - 0.0056 16.6 0.1 0.011 15.7 0.1 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix containing domain SMC_ScpA PF02616.14 EME71758.1 - 2.2e-12 47.4 0.0 3.7e-12 46.7 0.0 1.3 1 1 0 1 1 1 1 Segregation and condensation protein ScpA Rad21_Rec8 PF04824.16 EME71758.1 - 0.0013 18.0 0.0 0.0026 17.0 0.0 1.4 1 0 0 1 1 1 1 Conserved region of Rad21 / Rec8 like protein Peptidase_M50 PF02163.22 EME71759.1 - 4.3e-09 36.0 13.4 9.9e-06 25.0 1.4 2.9 1 1 1 2 2 2 2 Peptidase family M50 Glyco_hydro_3 PF00933.21 EME71760.1 - 2.7e-51 174.8 0.0 3.7e-51 174.4 0.0 1.0 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain SPOR PF05036.13 EME71761.1 - 1.2e-11 44.8 0.5 2.3e-11 43.9 0.5 1.5 1 0 0 1 1 1 1 Sporulation related domain DALR_1 PF05746.15 EME71762.1 - 3.9e-29 101.3 0.0 6.2e-29 100.6 0.0 1.3 1 0 0 1 1 1 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.16 EME71762.1 - 4.4e-21 75.3 0.1 1.3e-20 73.7 0.0 1.8 2 0 0 2 2 2 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1d PF00750.19 EME71762.1 - 4.2e-18 65.4 0.1 2.9e-11 42.9 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (R) tRNA-synt_1f PF01921.18 EME71762.1 - 1.5e-07 30.7 0.0 2.4e-05 23.4 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1e PF01406.19 EME71762.1 - 6.3e-07 29.0 0.0 0.034 13.5 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.11 EME71762.1 - 1.7e-05 23.7 0.0 0.042 12.6 0.0 3.1 3 0 0 3 3 3 2 tRNA synthetases class I (M) tRNA-synt_1 PF00133.22 EME71762.1 - 0.01 14.1 0.1 0.16 10.2 0.0 2.0 2 0 0 2 2 2 0 tRNA synthetases class I (I, L, M and V) HD_assoc PF13286.6 EME71763.1 - 1.2e-30 105.8 0.1 4.3e-30 104.1 0.1 2.0 1 0 0 1 1 1 1 Phosphohydrolase-associated domain HD PF01966.22 EME71763.1 - 1.7e-14 54.1 0.2 3.8e-14 52.9 0.2 1.7 1 0 0 1 1 1 1 HD domain HDOD PF08668.12 EME71763.1 - 6.8e-05 22.4 0.1 0.00016 21.2 0.0 1.6 2 0 0 2 2 2 1 HDOD domain Fe-S_biosyn PF01521.20 EME71764.1 - 1.7e-19 70.1 0.0 1.9e-19 69.9 0.0 1.0 1 0 0 1 1 1 1 Iron-sulphur cluster biosynthesis HATPase_c PF02518.26 EME71766.1 - 7.6e-26 90.8 0.0 1.3e-25 90.0 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 EME71766.1 - 2.7e-13 50.1 0.1 3.1e-10 40.3 0.0 2.5 2 0 0 2 2 2 2 PAS fold PAS_3 PF08447.12 EME71766.1 - 4.3e-11 43.0 0.1 6.3e-10 39.2 0.0 2.7 3 0 0 3 3 3 1 PAS fold HisKA PF00512.25 EME71766.1 - 7.6e-10 38.7 0.4 7.6e-10 38.7 0.4 2.5 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.7 EME71766.1 - 2.1e-07 31.1 0.0 6e-07 29.7 0.0 1.8 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 EME71766.1 - 7.2e-07 29.2 0.0 3.2e-06 27.1 0.0 2.2 1 1 0 1 1 1 1 PAS fold sCache_3_2 PF17203.4 EME71766.1 - 0.00019 21.6 0.0 0.015 15.4 0.1 3.0 2 1 0 2 2 2 1 Single cache domain 3 PAS_8 PF13188.7 EME71766.1 - 0.0024 17.8 0.1 0.0086 16.1 0.1 2.0 1 0 0 1 1 1 1 PAS domain HATPase_c_5 PF14501.6 EME71766.1 - 0.025 14.5 0.0 0.052 13.5 0.0 1.5 1 0 0 1 1 1 0 GHKL domain HATPase_c_3 PF13589.6 EME71766.1 - 0.079 12.8 0.0 0.16 11.8 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dCache_1 PF02743.18 EME71766.1 - 0.12 12.2 0.0 0.55 10.0 0.0 2.0 2 0 0 2 2 2 0 Cache domain EspB_PE PF18625.1 EME71766.1 - 0.24 11.9 1.9 0.32 11.5 0.1 2.1 2 0 0 2 2 2 0 ESX-1 secreted protein B PE domain Exo_endo_phos PF03372.23 EME71767.1 - 6.2e-27 94.6 2.3 7.3e-27 94.4 2.3 1.1 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Response_reg PF00072.24 EME71768.1 - 2.5e-17 63.0 0.0 6.2e-17 61.8 0.0 1.6 2 0 0 2 2 2 1 Response regulator receiver domain Hemerythrin PF01814.23 EME71768.1 - 1e-12 48.8 0.4 1.6e-12 48.2 0.4 1.3 1 0 0 1 1 1 1 Hemerythrin HHE cation binding domain TetR_C_31 PF17940.1 EME71768.1 - 0.025 14.8 0.2 0.055 13.7 0.2 1.6 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain BRCT_3 PF18428.1 EME71768.1 - 0.053 13.6 0.0 0.12 12.5 0.0 1.5 1 0 0 1 1 1 0 BRCA1 C Terminus (BRCT) domain ILVD_EDD PF00920.21 EME71769.1 - 9.9e-214 710.7 5.9 1.1e-213 710.5 5.9 1.0 1 0 0 1 1 1 1 Dehydratase family DivIC PF04977.15 EME71770.1 - 0.0016 18.2 1.7 0.0099 15.6 1.5 2.1 2 0 0 2 2 2 1 Septum formation initiator DUF2353 PF09789.9 EME71770.1 - 0.0053 16.2 0.2 0.0065 15.9 0.2 1.2 1 0 0 1 1 1 1 Uncharacterized coiled-coil protein (DUF2353) HALZ PF02183.18 EME71770.1 - 0.0057 16.8 4.4 0.0069 16.6 3.3 1.7 2 0 0 2 2 1 1 Homeobox associated leucine zipper bZIP_1 PF00170.21 EME71770.1 - 0.0088 16.1 1.0 0.016 15.3 1.0 1.4 1 0 0 1 1 1 1 bZIP transcription factor Mto2_bdg PF12808.7 EME71770.1 - 0.011 16.0 5.8 0.02 15.2 5.4 1.7 1 1 0 1 1 1 0 Micro-tubular organiser Mto1 C-term Mto2-binding region DUF2381 PF09544.10 EME71770.1 - 0.024 14.2 0.8 0.035 13.7 0.8 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2381) JIP_LZII PF16471.5 EME71770.1 - 0.028 14.6 1.3 0.086 13.0 1.5 1.7 2 0 0 2 2 2 0 JNK-interacting protein leucine zipper II TMF_DNA_bd PF12329.8 EME71770.1 - 0.03 14.3 1.8 0.38 10.8 1.2 2.1 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding Spc7 PF08317.11 EME71770.1 - 0.031 13.2 0.3 0.04 12.8 0.3 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein TolA_bind_tri PF16331.5 EME71770.1 - 0.037 14.1 0.2 0.051 13.6 0.2 1.4 1 0 0 1 1 1 0 TolA binding protein trimerisation NRBF2 PF08961.10 EME71770.1 - 0.038 13.6 0.2 0.052 13.1 0.2 1.4 1 0 0 1 1 1 0 Nuclear receptor-binding factor 2, autophagy regulator Swi5 PF07061.11 EME71770.1 - 0.039 14.0 0.4 0.07 13.2 0.3 1.5 1 1 0 1 1 1 0 Swi5 GAS PF13851.6 EME71770.1 - 0.039 13.3 0.2 0.046 13.1 0.2 1.2 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding Rootletin PF15035.6 EME71770.1 - 0.042 13.9 0.2 0.052 13.6 0.2 1.2 1 0 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion DUF4404 PF14357.6 EME71770.1 - 0.044 14.4 0.5 0.078 13.6 0.5 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4404) HalX PF08663.10 EME71770.1 - 0.047 14.0 4.8 0.1 13.0 4.2 2.0 2 0 0 2 2 1 0 HalX domain Snapin_Pallidin PF14712.6 EME71770.1 - 0.05 14.0 0.1 0.069 13.6 0.1 1.4 1 0 0 1 1 1 0 Snapin/Pallidin K-box PF01486.17 EME71770.1 - 0.051 13.7 0.4 0.073 13.2 0.4 1.3 1 0 0 1 1 1 0 K-box region APG6_N PF17675.1 EME71770.1 - 0.052 14.1 5.6 0.094 13.2 5.3 1.5 2 0 0 2 2 1 0 Apg6 coiled-coil region Cep57_CLD_2 PF14197.6 EME71770.1 - 0.053 13.6 7.2 0.13 12.4 7.0 1.9 1 1 0 1 1 1 0 Centrosome localisation domain of PPC89 ZapB PF06005.12 EME71770.1 - 0.058 13.8 4.3 0.11 13.0 4.4 1.4 1 1 0 1 1 1 0 Cell division protein ZapB CENP-Q PF13094.6 EME71770.1 - 0.069 13.4 1.3 0.078 13.2 1.3 1.1 1 0 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit DUF4201 PF13870.6 EME71770.1 - 0.07 12.9 0.0 0.082 12.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4201) bZIP_2 PF07716.15 EME71770.1 - 0.078 13.1 4.3 0.14 12.2 4.3 1.5 1 0 0 1 1 1 0 Basic region leucine zipper Spc24 PF08286.11 EME71770.1 - 0.078 13.2 0.1 0.095 12.9 0.1 1.3 1 0 0 1 1 1 0 Spc24 subunit of Ndc80 DUF1640 PF07798.11 EME71770.1 - 0.094 12.8 0.7 0.13 12.3 0.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1640) Hemerythrin PF01814.23 EME71770.1 - 0.098 13.3 5.7 0.89 10.2 5.7 2.0 1 1 0 1 1 1 0 Hemerythrin HHE cation binding domain DUF4795 PF16043.5 EME71770.1 - 0.11 12.1 0.1 0.14 11.8 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4795) MAD PF05557.13 EME71770.1 - 0.14 10.5 0.5 0.16 10.3 0.5 1.1 1 0 0 1 1 1 0 Mitotic checkpoint protein Atg14 PF10186.9 EME71770.1 - 0.16 11.1 0.0 0.16 11.1 0.0 1.1 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 THOC7 PF05615.13 EME71770.1 - 0.16 12.3 2.3 0.51 10.6 1.2 2.0 2 0 0 2 2 2 0 Tho complex subunit 7 Jnk-SapK_ap_N PF09744.9 EME71770.1 - 0.33 11.1 3.2 0.51 10.6 3.2 1.3 1 0 0 1 1 1 0 JNK_SAPK-associated protein-1 NUDE_C PF04880.13 EME71770.1 - 0.58 10.6 2.4 0.86 10.1 2.4 1.3 1 0 0 1 1 1 0 NUDE protein, C-terminal conserved region HAD_2 PF13419.6 EME71771.1 - 1.1e-15 58.1 0.0 1.7e-15 57.6 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 EME71771.1 - 9.1e-14 52.2 0.0 2.2e-12 47.7 0.0 2.1 1 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 EME71771.1 - 4.3e-05 23.5 0.0 0.00011 22.2 0.0 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase_6 PF13344.6 EME71771.1 - 0.0032 17.5 0.0 0.013 15.6 0.0 1.8 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase HAD PF12710.7 EME71771.1 - 0.0042 17.5 0.0 0.0056 17.1 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase SLT PF01464.20 EME71772.1 - 4.8e-25 87.5 0.0 1e-24 86.4 0.0 1.5 1 0 0 1 1 1 1 Transglycosylase SLT domain TPR_2 PF07719.17 EME71772.1 - 5.6 7.3 7.0 9.5 6.6 0.1 4.2 4 1 0 4 4 4 0 Tetratricopeptide repeat ABC_tran PF00005.27 EME71773.1 - 2.8e-30 105.6 0.0 3.5e-30 105.3 0.0 1.1 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 EME71773.1 - 1.9e-08 34.0 0.3 6.9e-06 25.7 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 EME71773.1 - 2.6e-08 34.0 1.1 0.00086 19.2 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 EME71773.1 - 0.00018 21.1 0.0 0.00033 20.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 EME71773.1 - 0.0027 18.1 0.8 0.0055 17.1 0.8 1.6 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 EME71773.1 - 0.0045 16.9 0.1 0.0093 15.9 0.1 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_25 PF13481.6 EME71773.1 - 0.013 15.1 1.9 0.29 10.7 1.9 2.2 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 EME71773.1 - 0.023 14.4 0.6 0.29 10.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.6 EME71773.1 - 0.034 14.4 0.7 0.52 10.6 0.7 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.6 EME71773.1 - 0.046 14.2 0.0 0.069 13.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 EME71773.1 - 0.11 12.5 0.8 0.47 10.5 0.3 2.1 2 0 0 2 2 2 0 50S ribosome-binding GTPase KAP_NTPase PF07693.14 EME71773.1 - 0.14 11.4 0.0 0.14 11.4 0.0 1.2 1 0 0 1 1 1 0 KAP family P-loop domain AAA_18 PF13238.6 EME71773.1 - 0.22 12.1 1.9 1.2 9.7 1.9 2.2 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 EME71773.1 - 0.22 11.7 2.2 1.6 8.9 2.2 2.1 1 1 0 1 1 1 0 AAA domain MacB_PCD PF12704.7 EME71774.1 - 1.2e-08 35.6 0.1 2.4e-08 34.6 0.1 1.5 1 0 0 1 1 1 1 MacB-like periplasmic core domain FtsX PF02687.21 EME71774.1 - 3.9e-06 27.2 2.5 3.9e-06 27.2 2.5 3.5 3 1 0 3 3 3 1 FtsX-like permease family Frizzled PF01534.17 EME71774.1 - 0.62 9.0 2.2 1 8.4 0.2 1.9 2 0 0 2 2 2 0 Frizzled/Smoothened family membrane region Chordopox_A13L PF05961.11 EME71774.1 - 5.8 7.2 5.8 0.54 10.5 0.8 1.8 2 0 0 2 2 2 0 Chordopoxvirus A13L protein HlyD_D23 PF16576.5 EME71775.1 - 1.8e-17 63.3 2.4 4.6e-17 62.0 2.4 1.6 1 1 0 1 1 1 1 Barrel-sandwich domain of CusB or HlyD membrane-fusion HlyD_3 PF13437.6 EME71775.1 - 4.5e-15 56.2 0.1 2e-13 51.0 0.0 2.6 2 0 0 2 2 2 1 HlyD family secretion protein Biotin_lipoyl_2 PF13533.6 EME71775.1 - 2.4e-06 27.3 0.1 0.00028 20.6 0.8 3.4 3 0 0 3 3 3 1 Biotin-lipoyl like Biotin_lipoyl PF00364.22 EME71775.1 - 0.0054 16.5 0.0 0.77 9.6 0.0 2.9 3 0 0 3 3 3 1 Biotin-requiring enzyme Bindin PF02084.15 EME71775.1 - 0.069 13.4 1.4 0.11 12.8 1.4 1.3 1 0 0 1 1 1 0 Bindin HlyD PF00529.20 EME71775.1 - 5 7.1 13.2 2.5e+02 1.7 11.4 3.2 1 1 1 2 2 2 0 HlyD membrane-fusion protein of T1SS DHDPS PF00701.22 EME71776.1 - 8.1e-96 320.1 0.0 9e-96 320.0 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family PA PF02225.22 EME71776.1 - 0.04 13.9 0.6 0.21 11.6 0.1 2.2 2 0 0 2 2 2 0 PA domain SmpB PF01668.18 EME71777.1 - 1.1e-54 184.3 0.1 1.2e-54 184.1 0.1 1.0 1 0 0 1 1 1 1 SmpB protein Oxidored_molyb PF00174.19 EME71778.1 - 3.4e-35 121.2 0.0 4.6e-35 120.8 0.0 1.1 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain HATPase_c PF02518.26 EME71779.1 - 1.8e-26 92.8 0.0 6.7e-26 91.0 0.0 2.0 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 EME71779.1 - 2.3e-18 66.0 2.8 6.5e-18 64.5 0.0 3.3 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain HPTransfase PF10090.9 EME71779.1 - 0.0095 15.7 0.1 0.041 13.7 0.0 2.1 2 0 0 2 2 2 1 Histidine phosphotransferase C-terminal domain PAS_4 PF08448.10 EME71779.1 - 0.043 14.1 0.1 0.38 11.0 0.0 2.8 2 1 0 2 2 2 0 PAS fold PAS_8 PF13188.7 EME71779.1 - 0.052 13.6 0.0 0.59 10.2 0.0 2.7 2 0 0 2 2 2 0 PAS domain dUTPase PF00692.19 EME71779.1 - 0.082 12.6 0.0 0.16 11.6 0.0 1.4 1 0 0 1 1 1 0 dUTPase Apq12 PF12716.7 EME71779.1 - 0.094 12.7 5.7 1.7 8.6 0.2 2.4 2 0 0 2 2 2 0 Nuclear pore assembly and biogenesis K-box PF01486.17 EME71779.1 - 0.13 12.5 7.9 0.64 10.2 2.3 3.1 2 1 1 3 3 3 0 K-box region HATPase_c_3 PF13589.6 EME71779.1 - 0.14 12.0 0.0 0.27 11.1 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase COG2 PF06148.11 EME71779.1 - 2.5 8.2 4.6 2.4 8.2 0.9 2.2 2 0 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 TMF_TATA_bd PF12325.8 EME71779.1 - 7.8 6.7 9.5 7.2 6.9 3.4 2.3 2 0 0 2 2 2 0 TATA element modulatory factor 1 TATA binding ZapB PF06005.12 EME71779.1 - 9.2 6.8 8.0 1.5 9.3 0.5 2.4 2 0 0 2 2 2 0 Cell division protein ZapB PgpA PF04608.13 EME71780.1 - 7.8e-48 162.1 3.4 8.8e-48 162.0 3.4 1.0 1 0 0 1 1 1 1 Phosphatidylglycerophosphatase A CinA PF02464.17 EME71781.1 - 1.3e-55 187.3 0.7 1.5e-55 187.1 0.7 1.0 1 0 0 1 1 1 1 Competence-damaged protein TPP_enzyme_N PF02776.18 EME71783.1 - 2.7e-51 173.6 1.3 2.7e-49 167.1 0.1 2.3 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 EME71783.1 - 1.7e-38 131.8 2.2 4.4e-37 127.2 0.1 3.4 3 1 0 3 3 3 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.22 EME71783.1 - 2.7e-29 101.6 0.0 6.2e-29 100.5 0.0 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain XFP_N PF09364.10 EME71783.1 - 0.037 12.8 0.0 1.7 7.4 0.0 2.1 2 0 0 2 2 2 0 XFP N-terminal domain Aldedh PF00171.22 EME71784.1 - 8.1e-120 400.4 0.0 1e-119 400.1 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family cNMP_binding PF00027.29 EME71785.1 - 5e-21 74.6 0.1 7.5e-21 74.0 0.1 1.3 1 0 0 1 1 1 1 Cyclic nucleotide-binding domain CAP_N PF01213.19 EME71786.1 - 0.34 10.3 3.8 0.37 10.2 3.8 1.0 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal Cyclophil_like PF04126.13 EME71787.1 - 1.1e-39 134.9 0.0 1.3e-39 134.7 0.0 1.0 1 0 0 1 1 1 1 Cyclophilin-like Cyclophil_like2 PF18050.1 EME71787.1 - 2.7e-06 27.3 0.0 3.3e-06 27.0 0.0 1.1 1 0 0 1 1 1 1 Cyclophilin-like family Acetate_kinase PF00871.17 EME71788.1 - 1.6e-106 356.3 0.0 1.8e-106 356.2 0.0 1.0 1 0 0 1 1 1 1 Acetokinase family PTA_PTB PF01515.19 EME71789.1 - 5.9e-53 180.2 4.4 4.9e-48 164.1 3.6 2.1 1 1 1 2 2 2 2 Phosphate acetyl/butaryl transferase MaoC_dehydratas PF01575.19 EME71789.1 - 2.9e-13 49.4 0.0 5.8e-13 48.5 0.0 1.4 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 EME71789.1 - 0.00047 20.3 0.0 0.0012 18.9 0.0 1.8 1 0 0 1 1 1 1 N-terminal half of MaoC dehydratase ATP-grasp_5 PF13549.6 EME71790.1 - 1.9e-90 302.2 0.8 2.7e-90 301.7 0.8 1.3 1 0 0 1 1 1 1 ATP-grasp domain Succ_CoA_lig PF13607.6 EME71790.1 - 1.6e-58 196.4 0.2 3.4e-58 195.3 0.2 1.6 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 EME71790.1 - 4.3e-20 72.3 0.1 5.6e-19 68.7 0.0 2.8 2 0 0 2 2 2 1 CoA binding domain Acetyltransf_1 PF00583.25 EME71790.1 - 1.3e-09 38.3 0.0 4.4e-09 36.6 0.0 1.9 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.7 EME71790.1 - 1.8e-07 31.9 0.0 6.1e-07 30.2 0.0 2.0 2 0 0 2 2 1 1 Acetyltransferase (GNAT) domain CoA_binding PF02629.19 EME71790.1 - 7.9e-05 23.3 0.0 0.00021 21.9 0.0 1.8 1 0 0 1 1 1 1 CoA binding domain Acetyltransf_10 PF13673.7 EME71790.1 - 0.00063 19.7 0.0 0.0014 18.5 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 EME71790.1 - 0.016 14.9 0.0 0.043 13.5 0.0 1.7 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain ATP-grasp_2 PF08442.10 EME71790.1 - 0.021 14.4 0.1 0.044 13.3 0.1 1.6 1 1 0 1 1 1 0 ATP-grasp domain FR47 PF08445.10 EME71790.1 - 0.031 14.2 0.0 0.074 13.0 0.0 1.6 1 0 0 1 1 1 0 FR47-like protein Acetyltransf_7 PF13508.7 EME71790.1 - 0.075 13.5 0.0 0.2 12.1 0.0 1.6 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 EME71790.1 - 0.078 13.1 0.1 0.41 10.8 0.0 2.2 2 0 0 2 2 2 0 GCN5-related N-acetyl-transferase MotA_ExbB PF01618.16 EME71791.1 - 1.1e-19 70.4 0.4 2.5e-19 69.3 0.3 1.6 1 1 0 1 1 1 1 MotA/TolQ/ExbB proton channel family MotB_plug PF13677.6 EME71792.1 - 7.4e-21 73.5 0.9 1.2e-20 72.8 0.9 1.3 1 0 0 1 1 1 1 Membrane MotB of proton-channel complex MotA/MotB OmpA PF00691.20 EME71792.1 - 1.2e-14 54.5 0.0 2e-14 53.7 0.0 1.4 1 0 0 1 1 1 1 OmpA family ExbD PF02472.16 EME71792.1 - 0.031 14.4 0.0 0.081 13.1 0.0 1.7 2 0 0 2 2 2 0 Biopolymer transport protein ExbD/TolR HEPN_DZIP3 PF18738.1 EME71792.1 - 0.16 11.7 0.0 1.8 8.3 0.0 2.3 3 0 0 3 3 3 0 DZIP3/ hRUL138-like HEPN ECH_2 PF16113.5 EME71794.1 - 6.8e-121 403.8 0.0 7.7e-121 403.7 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_1 PF00378.20 EME71794.1 - 2.4e-35 122.1 0.0 3.1e-35 121.7 0.0 1.1 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase Cys_Met_Meta_PP PF01053.20 EME71795.1 - 3.6e-127 424.1 0.0 4.1e-127 423.9 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 EME71795.1 - 0.0015 17.9 0.0 0.0027 17.1 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family ALAD PF00490.21 EME71796.1 - 6.4e-139 462.5 0.0 7.3e-139 462.3 0.0 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase AP_endonuc_2 PF01261.24 EME71796.1 - 0.031 13.7 0.0 0.095 12.1 0.0 1.8 1 1 1 2 2 2 0 Xylose isomerase-like TIM barrel FGE-sulfatase PF03781.16 EME71797.1 - 2.3e-49 168.3 1.4 7.2e-49 166.7 1.4 1.7 1 1 0 1 1 1 1 Sulfatase-modifying factor enzyme 1 Omptin PF01278.20 EME71797.1 - 0.032 13.3 0.4 0.048 12.7 0.4 1.2 1 0 0 1 1 1 0 Omptin family Methyltransf_21 PF05050.12 EME71798.1 - 2.1e-10 40.9 0.0 5.7e-10 39.5 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase FkbM domain Met_10 PF02475.16 EME71798.1 - 0.16 11.7 0.0 0.23 11.2 0.0 1.1 1 0 0 1 1 1 0 Met-10+ like-protein Glyco_hydro_17 PF00332.18 EME71799.1 - 3.1e-06 27.0 0.0 6.5e-06 26.0 0.0 1.4 2 0 0 2 2 2 1 Glycosyl hydrolases family 17 LEA_2 PF03168.13 EME71800.1 - 4.4e-16 59.2 0.1 9.2e-16 58.2 0.0 1.5 2 0 0 2 2 2 1 Late embryogenesis abundant protein DUF4352 PF11611.8 EME71800.1 - 0.12 12.7 0.0 0.18 12.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4352) GP3_package PF16677.5 EME71800.1 - 0.12 12.5 0.0 0.24 11.5 0.0 1.5 1 1 0 1 1 1 0 DNA-packaging protein gp3 DNA_pol3_alpha PF07733.12 EME71801.1 - 1.7e-101 339.2 0.0 3e-101 338.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial DNA polymerase III alpha NTPase domain DNA_pol3_finger PF17657.1 EME71801.1 - 4.5e-65 218.0 0.0 7.8e-65 217.3 0.0 1.4 1 0 0 1 1 1 1 Bacterial DNA polymerase III alpha subunit finger domain PHP PF02811.19 EME71801.1 - 1e-32 113.7 0.0 2e-32 112.8 0.0 1.5 1 0 0 1 1 1 1 PHP domain HHH_6 PF14579.6 EME71801.1 - 7.9e-27 93.4 1.1 2.4e-26 91.8 0.0 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix motif DUF655 PF04919.12 EME71801.1 - 0.038 13.9 0.0 0.084 12.8 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF655) tRNA_anti-codon PF01336.25 EME71801.1 - 0.072 13.1 0.0 0.18 11.8 0.0 1.6 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain HD PF01966.22 EME71802.1 - 5.6e-31 107.3 2.8 7.5e-17 61.7 0.1 2.3 2 0 0 2 2 2 2 HD domain HD_5 PF13487.6 EME71802.1 - 1.9e-07 31.2 0.0 1e-05 25.6 0.0 2.5 2 0 0 2 2 2 1 HD domain HDOD PF08668.12 EME71802.1 - 1.5e-05 24.5 0.3 0.035 13.6 0.0 2.8 3 0 0 3 3 3 2 HDOD domain Y1_Tnp PF01797.16 EME71803.1 - 4.3e-09 36.5 0.0 6.5e-09 35.9 0.0 1.3 1 0 0 1 1 1 1 Transposase IS200 like RPEL PF02755.15 EME71803.1 - 0.18 11.6 0.1 0.35 10.6 0.1 1.5 1 0 0 1 1 1 0 RPEL repeat ABC_tran PF00005.27 EME71804.1 - 4.8e-29 101.6 0.0 6e-29 101.3 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 EME71804.1 - 1.1e-08 35.3 0.0 0.00075 19.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 EME71804.1 - 0.00028 20.5 0.0 0.00054 19.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 EME71804.1 - 0.0018 18.7 0.6 0.0048 17.3 0.6 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.6 EME71804.1 - 0.0022 18.2 0.1 0.016 15.4 0.1 2.1 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 EME71804.1 - 0.0031 17.4 0.0 0.0058 16.6 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 EME71804.1 - 0.0072 16.6 0.0 0.14 12.4 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.6 EME71804.1 - 0.019 14.5 0.2 0.06 12.9 0.0 1.8 2 1 0 2 2 2 0 AAA domain SMC_N PF02463.19 EME71804.1 - 0.027 13.9 0.0 5.3 6.4 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 EME71804.1 - 0.046 13.4 0.0 0.099 12.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 EME71804.1 - 0.051 14.1 0.0 0.071 13.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 EME71804.1 - 0.11 12.5 0.0 0.17 11.8 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain IstB_IS21 PF01695.17 EME71804.1 - 0.11 12.2 0.0 0.19 11.5 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein MacB_PCD PF12704.7 EME71805.1 - 5.3e-18 66.1 1.1 5.3e-18 66.1 1.1 1.9 3 0 0 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.21 EME71805.1 - 1.3e-11 44.8 2.8 1.3e-11 44.8 2.8 3.1 3 0 0 3 3 3 1 FtsX-like permease family NPCC PF08058.11 EME71805.1 - 0.098 12.7 0.2 0.19 11.8 0.2 1.4 1 0 0 1 1 1 0 Nuclear pore complex component DUF2909 PF11137.8 EME71805.1 - 5.5 7.0 11.6 3.7 7.6 3.8 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF2909) DUF4407 PF14362.6 EME71806.1 - 0.035 13.4 14.5 0.051 12.9 14.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) PCRF PF03462.18 EME71806.1 - 0.07 13.0 3.3 0.082 12.8 0.7 1.9 1 1 1 2 2 2 0 PCRF domain Spc7 PF08317.11 EME71806.1 - 0.13 11.1 2.0 8.2 5.2 0.0 2.0 2 0 0 2 2 2 0 Spc7 kinetochore protein DUF4200 PF13863.6 EME71806.1 - 0.26 11.7 1.4 4 7.8 0.7 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) Ammonium_transp PF00909.21 EME71806.1 - 5.1 5.7 13.9 0.38 9.4 5.6 2.0 2 0 0 2 2 2 0 Ammonium Transporter Family Adenine_glyco PF03352.13 EME71807.1 - 9.2e-41 139.5 0.0 3.9e-39 134.2 0.0 2.0 1 1 1 2 2 2 2 Methyladenine glycosylase Glyoxalase_4 PF13669.6 EME71808.1 - 9.7e-22 77.3 0.0 1.2e-21 77.1 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase PF00903.25 EME71808.1 - 5.5e-12 46.0 0.0 5.7e-12 45.9 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.6 EME71808.1 - 4.2e-06 27.0 0.0 5.3e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_6 PF18029.1 EME71808.1 - 0.00018 22.3 0.0 0.00025 21.8 0.0 1.2 1 0 0 1 1 1 1 Glyoxalase-like domain Penicil_amidase PF01804.18 EME71809.1 - 3.1e-224 746.9 10.1 3.9e-224 746.6 10.1 1.0 1 0 0 1 1 1 1 Penicillin amidase Flavin_Reduct PF01613.18 EME71810.1 - 7.5e-41 139.7 0.0 8.9e-41 139.5 0.0 1.0 1 0 0 1 1 1 1 Flavin reductase like domain MotA_ExbB PF01618.16 EME71811.1 - 6.8e-11 42.0 0.1 1.3e-10 41.1 0.1 1.5 1 0 0 1 1 1 1 MotA/TolQ/ExbB proton channel family MotB_plug PF13677.6 EME71812.1 - 9.2e-17 60.4 0.2 9.2e-17 60.4 0.2 1.6 2 0 0 2 2 2 1 Membrane MotB of proton-channel complex MotA/MotB OmpA PF00691.20 EME71812.1 - 1.9e-13 50.6 0.0 3.5e-13 49.7 0.0 1.4 1 0 0 1 1 1 1 OmpA family PTS_IIA PF02255.16 EME71812.1 - 0.2 11.8 0.2 0.31 11.1 0.2 1.2 1 0 0 1 1 1 0 PTS system, Lactose/Cellobiose specific IIA subunit RDD PF06271.12 EME71813.1 - 4.4e-16 59.4 7.2 5.5e-16 59.1 7.2 1.1 1 0 0 1 1 1 1 RDD family ATE_C PF04377.15 EME71814.1 - 4e-35 121.4 0.0 5.1e-35 121.0 0.0 1.1 1 0 0 1 1 1 1 Arginine-tRNA-protein transferase, C terminus ATE_N PF04376.13 EME71814.1 - 1e-13 51.5 0.0 2.1e-13 50.5 0.0 1.6 1 0 0 1 1 1 1 Arginine-tRNA-protein transferase, N terminus Acetyltransf_6 PF13480.7 EME71814.1 - 0.0078 16.4 1.1 0.015 15.5 1.1 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain DctQ PF04290.12 EME71815.1 - 1.8e-22 79.7 7.0 2.2e-22 79.4 7.0 1.1 1 0 0 1 1 1 1 Tripartite ATP-independent periplasmic transporters, DctQ component DctM PF06808.12 EME71816.1 - 2.1e-122 409.0 43.2 2.4e-122 408.8 43.2 1.0 1 0 0 1 1 1 1 Tripartite ATP-independent periplasmic transporter, DctM component DctP PF03480.13 EME71817.1 - 5.3e-66 222.9 0.0 6.8e-66 222.5 0.0 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein, family 7 PSDC PF12588.8 EME71817.1 - 0.0072 16.3 0.0 0.013 15.5 0.0 1.4 1 0 0 1 1 1 1 Phophatidylserine decarboxylase TAT_signal PF10518.9 EME71817.1 - 0.017 14.9 5.0 0.039 13.8 5.0 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Cuticle_2 PF08184.11 EME71817.1 - 0.63 10.1 4.7 0.25 11.4 1.2 2.1 2 0 0 2 2 2 0 Cuticle protein 7 isoform family DNA_topoisoIV PF00521.20 EME71818.1 - 1.8e-144 481.8 0.0 2.2e-144 481.5 0.0 1.1 1 0 0 1 1 1 1 DNA gyrase/topoisomerase IV, subunit A DNA_gyraseA_C PF03989.13 EME71818.1 - 5.3e-09 35.4 0.3 0.0029 17.1 0.0 3.8 3 0 0 3 3 3 3 DNA gyrase C-terminal domain, beta-propeller TetR_N PF00440.23 EME71819.1 - 2.7e-14 52.7 0.1 4.8e-14 51.9 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_24 PF17932.1 EME71819.1 - 1.2e-10 41.6 0.1 2.1e-10 40.9 0.1 1.4 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain LacI PF00356.21 EME71819.1 - 0.0058 16.4 0.1 0.012 15.4 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, lacI family HTH_Tnp_1 PF01527.20 EME71819.1 - 0.14 12.5 1.3 0.31 11.4 0.0 2.3 3 0 0 3 3 3 0 Transposase adh_short_C2 PF13561.6 EME71820.1 - 2.6e-57 194.1 7.4 3.7e-57 193.6 7.4 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 EME71820.1 - 2e-56 190.6 2.7 2.4e-56 190.3 2.7 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 EME71820.1 - 1.8e-12 47.6 3.3 2.4e-12 47.1 2.8 1.4 1 1 0 1 1 1 1 KR domain Epimerase PF01370.21 EME71820.1 - 4e-05 23.2 0.2 0.00031 20.3 0.1 2.0 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 EME71820.1 - 0.00035 20.5 4.0 0.00047 20.1 4.0 1.4 1 1 0 1 1 1 1 NAD(P)H-binding F420_oxidored PF03807.17 EME71820.1 - 0.012 16.1 2.8 0.013 16.1 0.7 2.1 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.16 EME71820.1 - 0.069 12.8 0.2 0.13 11.9 0.2 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA TrkA_N PF02254.18 EME71820.1 - 0.072 13.4 0.2 0.13 12.5 0.2 1.5 1 0 0 1 1 1 0 TrkA-N domain Shikimate_DH PF01488.20 EME71820.1 - 0.12 12.4 0.2 0.21 11.6 0.2 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase 3Beta_HSD PF01073.19 EME71820.1 - 0.13 11.2 0.0 0.18 10.7 0.0 1.2 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_7 PF13241.6 EME71820.1 - 0.2 12.1 1.8 0.39 11.2 0.5 2.2 2 1 0 2 2 2 0 Putative NAD(P)-binding NmrA PF05368.13 EME71820.1 - 0.26 10.8 2.8 0.46 10.0 1.5 1.9 2 1 1 3 3 3 0 NmrA-like family Acyl-CoA_dh_1 PF00441.24 EME71821.1 - 4.8e-45 153.4 5.8 4.8e-45 153.4 5.8 1.8 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 EME71821.1 - 2.2e-21 75.9 0.0 4.1e-21 75.0 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 EME71821.1 - 1.9e-20 73.5 5.6 1.9e-20 73.5 5.6 1.6 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 EME71821.1 - 6.7e-15 55.7 0.5 1.4e-14 54.7 0.1 1.8 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain HpaB_N PF11794.8 EME71821.1 - 0.1 12.2 0.0 0.18 11.4 0.0 1.3 1 0 0 1 1 1 0 4-hydroxyphenylacetate 3-hydroxylase N terminal ECH_1 PF00378.20 EME71822.1 - 2.3e-39 135.2 0.0 2.6e-39 135.1 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 EME71822.1 - 5.2e-25 88.6 0.6 7.3e-24 84.9 0.2 1.9 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase adh_short_C2 PF13561.6 EME71823.1 - 1.8e-62 211.0 0.2 2.1e-62 210.7 0.2 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 EME71823.1 - 1.1e-57 194.6 0.1 1.5e-57 194.2 0.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 EME71823.1 - 1.4e-13 51.2 0.1 2e-13 50.7 0.1 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 EME71823.1 - 0.00014 21.4 0.1 0.00029 20.4 0.1 1.8 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 EME71823.1 - 0.04 13.3 0.0 0.051 13.0 0.0 1.2 1 0 0 1 1 1 0 GDP-mannose 4,6 dehydratase Methyltransf_25 PF13649.6 EME71823.1 - 0.065 13.9 0.1 0.12 13.1 0.1 1.5 1 0 0 1 1 1 0 Methyltransferase domain B12-binding PF02310.19 EME71823.1 - 0.076 13.1 0.1 0.14 12.2 0.1 1.4 1 0 0 1 1 1 0 B12 binding domain AlaDh_PNT_C PF01262.21 EME71823.1 - 0.11 11.7 2.1 0.11 11.8 0.9 1.5 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain ECH_1 PF00378.20 EME71824.1 - 3.1e-49 167.6 0.1 3.7e-49 167.3 0.1 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 EME71824.1 - 2.7e-32 112.6 0.0 3e-32 112.4 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase Glyco_hydro_79n PF03662.14 EME71824.1 - 0.22 10.4 0.0 0.29 10.0 0.0 1.1 1 0 0 1 1 1 0 Glycosyl hydrolase family 79, N-terminal domain Abhydrolase_3 PF07859.13 EME71825.1 - 2e-62 210.8 1.0 2.5e-62 210.5 1.0 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold COesterase PF00135.28 EME71825.1 - 6.4e-05 22.0 0.2 0.00019 20.5 0.2 1.6 1 1 0 1 1 1 1 Carboxylesterase family Say1_Mug180 PF10340.9 EME71825.1 - 0.0022 16.9 0.0 0.0041 16.0 0.0 1.3 1 1 0 1 1 1 1 Steryl acetyl hydrolase Aldedh PF00171.22 EME71826.1 - 5e-152 506.6 0.0 5.6e-152 506.5 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family Thiolase_N PF00108.23 EME71827.1 - 4e-66 223.0 0.0 5.6e-66 222.6 0.0 1.2 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 EME71827.1 - 6.2e-42 142.1 2.8 1.2e-41 141.2 2.8 1.5 1 0 0 1 1 1 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 EME71827.1 - 0.00045 19.9 0.5 0.00045 19.9 0.5 1.8 2 0 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain 3HCDH_N PF02737.18 EME71828.1 - 1.4e-52 178.2 1.2 2e-52 177.7 1.2 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.22 EME71828.1 - 1.7e-43 147.2 0.0 5.6e-25 87.8 0.0 2.6 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_binding_2 PF03446.15 EME71828.1 - 0.0016 18.6 1.3 0.0031 17.7 1.3 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 EME71828.1 - 0.0028 17.0 0.3 0.0051 16.2 0.3 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ADH_zinc_N PF00107.26 EME71828.1 - 0.27 11.2 2.9 0.66 10.0 2.9 1.6 1 0 0 1 1 1 0 Zinc-binding dehydrogenase F420_oxidored PF03807.17 EME71828.1 - 0.38 11.3 3.2 1.1 9.9 3.2 1.9 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent ECH_1 PF00378.20 EME71829.1 - 1.1e-75 254.2 0.7 1.4e-75 253.9 0.7 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 EME71829.1 - 3.4e-38 132.0 3.4 1e-34 120.6 1.7 2.0 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase HTH_IclR PF09339.10 EME71830.1 - 2.7e-18 65.5 0.3 7.3e-18 64.1 0.2 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain IclR PF01614.18 EME71830.1 - 2.1e-12 47.0 0.0 3.4e-12 46.3 0.0 1.3 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_24 PF13412.6 EME71830.1 - 0.00016 21.2 0.0 0.00029 20.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 EME71830.1 - 0.00025 20.8 0.0 0.0012 18.7 0.0 2.1 2 0 0 2 2 2 1 MarR family HTH_Crp_2 PF13545.6 EME71830.1 - 0.0062 16.5 0.0 0.015 15.2 0.0 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_36 PF13730.6 EME71830.1 - 0.0092 15.9 0.0 0.02 14.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.20 EME71830.1 - 0.011 16.1 0.0 0.04 14.3 0.0 1.9 2 0 0 2 2 2 0 Transcriptional regulator MarR PF01047.22 EME71830.1 - 0.013 15.4 0.0 0.029 14.3 0.0 1.5 1 0 0 1 1 1 0 MarR family Acyl-CoA_dh_1 PF00441.24 EME71831.1 - 3e-48 163.8 3.8 4.6e-48 163.2 3.8 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 EME71831.1 - 6.5e-31 106.4 0.0 1.2e-30 105.5 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_N PF02771.16 EME71831.1 - 7e-28 97.5 0.0 1.6e-27 96.4 0.0 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.11 EME71831.1 - 9.4e-21 74.5 2.8 1.8e-20 73.6 2.8 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain HpaB_N PF11794.8 EME71831.1 - 0.011 15.4 0.0 0.039 13.6 0.0 1.9 1 1 0 1 1 1 0 4-hydroxyphenylacetate 3-hydroxylase N terminal 4HBT PF03061.22 EME71832.1 - 1.8e-08 34.6 0.3 2.3e-08 34.3 0.3 1.2 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.6 EME71832.1 - 0.013 15.6 0.0 0.017 15.3 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4442) Glyco_transf_41 PF13844.6 EME71833.1 - 3.4e-50 170.9 0.0 1.2e-31 109.7 0.0 2.1 2 0 0 2 2 2 2 Glycosyl transferase family 41 TPR_2 PF07719.17 EME71833.1 - 2.8e-33 111.3 11.1 9.8e-07 28.4 0.0 7.9 7 0 0 7 7 7 6 Tetratricopeptide repeat TPR_1 PF00515.28 EME71833.1 - 1.5e-32 110.1 0.7 5.3e-07 29.2 0.0 7.1 7 0 0 7 7 7 5 Tetratricopeptide repeat TPR_8 PF13181.6 EME71833.1 - 6.5e-30 100.8 0.0 4.6e-05 23.3 0.0 7.5 7 0 0 7 7 7 6 Tetratricopeptide repeat TPR_16 PF13432.6 EME71833.1 - 1.1e-23 83.6 45.6 1.7e-08 35.0 5.1 6.2 4 2 2 7 7 6 4 Tetratricopeptide repeat TPR_11 PF13414.6 EME71833.1 - 1.5e-20 72.5 3.9 6.7e-05 22.5 0.1 7.3 2 1 6 8 8 8 5 TPR repeat TPR_12 PF13424.6 EME71833.1 - 7.5e-19 67.8 25.6 3.3e-08 33.7 1.9 5.7 4 3 2 6 6 5 3 Tetratricopeptide repeat TPR_17 PF13431.6 EME71833.1 - 2e-18 65.3 10.3 0.031 14.7 0.1 7.8 8 0 0 8 8 8 4 Tetratricopeptide repeat TPR_14 PF13428.6 EME71833.1 - 2.5e-16 59.0 44.7 0.00024 21.7 0.9 9.0 3 1 6 9 9 8 6 Tetratricopeptide repeat TPR_19 PF14559.6 EME71833.1 - 8.3e-16 58.3 21.4 0.0026 18.2 2.6 4.8 2 1 1 4 4 4 4 Tetratricopeptide repeat TPR_7 PF13176.6 EME71833.1 - 3.7e-12 45.4 14.5 0.0076 16.2 0.0 7.5 8 0 0 8 8 7 3 Tetratricopeptide repeat TPR_6 PF13174.6 EME71833.1 - 1.6e-10 40.9 6.7 0.34 11.7 0.0 7.3 8 0 0 8 8 7 3 Tetratricopeptide repeat TPR_10 PF13374.6 EME71833.1 - 3.4e-10 39.4 37.1 0.0069 16.2 0.5 8.3 8 0 0 8 8 7 4 Tetratricopeptide repeat TPR_9 PF13371.6 EME71833.1 - 7.9e-09 35.6 31.4 4.4e-05 23.5 2.7 5.4 2 1 4 6 6 6 3 Tetratricopeptide repeat TPR_4 PF07721.14 EME71833.1 - 2.1e-08 34.0 50.3 0.011 16.3 0.3 9.4 9 0 0 9 9 8 4 Tetratricopeptide repeat TPR_15 PF13429.6 EME71833.1 - 0.00044 19.6 13.6 0.14 11.3 9.5 3.4 1 1 1 2 2 2 2 Tetratricopeptide repeat ANAPC3 PF12895.7 EME71833.1 - 0.003 17.8 2.0 0.098 12.9 0.1 3.1 3 0 0 3 3 3 1 Anaphase-promoting complex, cyclosome, subunit 3 BTAD PF03704.17 EME71833.1 - 0.003 18.0 29.6 0.014 15.8 0.3 4.7 3 1 2 5 5 5 2 Bacterial transcriptional activator domain TPR_5 PF12688.7 EME71833.1 - 0.0066 16.7 7.5 0.72 10.1 0.4 3.0 2 0 0 2 2 2 2 Tetratrico peptide repeat Wzy_C_2 PF11846.8 EME71833.1 - 0.15 12.0 7.3 0.61 10.0 0.5 3.5 1 1 3 4 4 4 0 Virulence factor membrane-bound polymerase, C-terminal OTCace PF00185.24 EME71833.1 - 0.23 11.5 0.0 0.46 10.5 0.0 1.4 1 0 0 1 1 1 0 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NARP1 PF12569.8 EME71833.1 - 0.28 10.0 0.6 39 3.0 0.1 3.0 2 1 1 3 3 3 0 NMDA receptor-regulated protein 1 TPR_21 PF09976.9 EME71833.1 - 1.5 8.5 9.5 0.096 12.4 2.5 2.4 2 1 0 2 2 2 0 Tetratricopeptide repeat-like domain ApbE PF02424.15 EME71834.1 - 6.5e-62 209.4 0.1 7.9e-62 209.1 0.1 1.1 1 0 0 1 1 1 1 ApbE family RseC_MucC PF04246.12 EME71835.1 - 7.5e-27 93.8 0.0 8.8e-27 93.6 0.0 1.0 1 0 0 1 1 1 1 Positive regulator of sigma(E), RseC/MucC Rnf-Nqr PF02508.14 EME71836.1 - 3.8e-54 183.3 18.0 4.2e-54 183.1 18.0 1.0 1 0 0 1 1 1 1 Rnf-Nqr subunit, membrane protein Fer4_21 PF14697.6 EME71837.1 - 2.3e-12 46.8 10.9 2.3e-12 46.8 10.9 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain FeS PF04060.13 EME71837.1 - 9e-12 44.4 5.0 9e-12 44.4 5.0 2.0 2 0 0 2 2 2 1 Putative Fe-S cluster Fer4 PF00037.27 EME71837.1 - 1.1e-09 37.7 20.5 3.3e-05 23.5 2.9 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 EME71837.1 - 2.9e-07 30.3 20.9 0.00033 20.6 3.8 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.6 EME71837.1 - 8.7e-06 25.8 10.3 8.7e-06 25.8 10.3 2.3 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 EME71837.1 - 4.3e-05 24.4 13.7 0.00038 21.3 1.5 3.0 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 EME71837.1 - 0.00031 20.8 16.7 0.006 16.7 12.8 3.0 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 EME71837.1 - 0.00034 21.1 15.3 0.0018 18.8 10.3 2.6 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 EME71837.1 - 0.027 14.6 2.0 0.027 14.6 2.0 3.3 3 0 0 3 3 3 0 4Fe-4S binding domain PreAtp-grasp PF18604.1 EME71837.1 - 0.12 12.0 0.0 0.19 11.3 0.0 1.3 1 0 0 1 1 1 0 Pre ATP-grasp domain Fer4_22 PF17179.4 EME71837.1 - 0.44 11.4 0.2 0.44 11.4 0.2 2.8 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 EME71837.1 - 1.9 9.3 11.0 1.2e+02 3.5 11.0 2.8 1 1 0 1 1 1 0 4Fe-4S single cluster domain Fer4_18 PF13746.6 EME71837.1 - 3.5 7.8 10.4 1 9.6 1.7 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 EME71837.1 - 5.2 7.7 18.2 2.4 8.8 2.3 3.0 1 1 3 4 4 4 0 4Fe-4S dicluster domain Complex1_51K PF01512.17 EME71838.1 - 9.1e-49 165.2 0.6 1.8e-48 164.3 0.6 1.5 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit RnfC_N PF13375.6 EME71838.1 - 3.9e-32 110.2 0.0 1.9e-31 108.0 0.0 2.2 2 1 0 2 2 2 1 RnfC Barrel sandwich hybrid domain SLBB PF10531.9 EME71838.1 - 2.6e-16 59.2 0.4 5.8e-16 58.1 0.4 1.7 1 0 0 1 1 1 1 SLBB domain Fer4_10 PF13237.6 EME71838.1 - 6.4e-07 29.4 10.8 1.7e-06 28.0 11.0 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 EME71838.1 - 1e-06 29.2 8.0 2.5e-06 28.0 8.0 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 EME71838.1 - 2.4e-06 27.6 8.5 6.9e-06 26.1 8.5 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 EME71838.1 - 6.5e-06 26.6 11.9 0.0028 18.1 0.3 3.1 4 0 0 4 4 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 EME71838.1 - 4.5e-05 23.8 13.4 6.1e-05 23.4 11.0 2.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain NQRA_SLBB PF11973.8 EME71838.1 - 6.7e-05 23.4 0.2 0.00022 21.8 0.2 1.9 1 0 0 1 1 1 1 NQRA C-terminal domain Fer4_2 PF12797.7 EME71838.1 - 7.7e-05 22.6 14.7 0.032 14.3 1.9 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 EME71838.1 - 0.00014 22.1 13.7 0.061 13.9 5.0 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 EME71838.1 - 0.0002 21.5 11.6 0.015 15.5 0.6 2.8 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.27 EME71838.1 - 0.00024 20.8 18.0 0.044 13.6 2.7 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain NQRA PF05896.11 EME71838.1 - 0.00056 19.4 0.0 0.0046 16.4 0.0 2.2 2 0 0 2 2 2 1 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) Fer4_21 PF14697.6 EME71838.1 - 0.00097 19.2 10.9 0.0038 17.3 10.9 2.0 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_20 PF14691.6 EME71838.1 - 0.014 15.2 3.7 0.033 14.0 3.7 1.6 1 0 0 1 1 1 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_6 PF12837.7 EME71838.1 - 0.017 15.2 16.8 0.19 11.9 5.7 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.6 EME71838.1 - 0.093 13.7 13.8 1.4 9.9 2.1 3.0 2 1 0 2 2 2 0 4Fe-4S double cluster binding domain Striatin PF08232.12 EME71838.1 - 0.38 11.3 7.7 0.66 10.5 7.7 1.3 1 0 0 1 1 1 0 Striatin family Fer4_22 PF17179.4 EME71838.1 - 1.3 9.9 16.5 0.29 12.0 1.1 2.6 1 1 3 4 4 4 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 EME71838.1 - 5.6 8.1 20.7 3 9.0 3.5 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain zf-CSL PF05207.13 EME71838.1 - 6.2 6.6 8.1 2.2e+02 1.6 8.1 2.3 1 1 0 1 1 1 0 CSL zinc finger Biotin_lipoyl_2 PF13533.6 EME71838.1 - 8.5 6.3 7.3 1.6 8.6 0.1 3.1 3 0 0 3 3 2 0 Biotin-lipoyl like NQR2_RnfD_RnfE PF03116.15 EME71839.1 - 7.9e-107 357.0 16.1 8.9e-107 356.8 16.1 1.0 1 0 0 1 1 1 1 NQR2, RnfD, RnfE family FMN_bind PF04205.14 EME71840.1 - 7.6e-20 71.3 0.0 1.5e-19 70.3 0.0 1.5 1 0 0 1 1 1 1 FMN-binding domain Rnf-Nqr PF02508.14 EME71841.1 - 9.9e-56 188.4 11.0 1.1e-55 188.2 11.0 1.0 1 0 0 1 1 1 1 Rnf-Nqr subunit, membrane protein Ub-RnfH PF03658.14 EME71842.1 - 6.3e-36 122.6 0.0 7.5e-36 122.4 0.0 1.0 1 0 0 1 1 1 1 RnfH family Ubiquitin Ub-Mut7C PF14451.6 EME71842.1 - 0.00016 21.4 0.0 0.00024 20.9 0.0 1.3 1 0 0 1 1 1 1 Mut7-C ubiquitin SLBB PF10531.9 EME71842.1 - 0.011 15.6 0.0 0.025 14.4 0.0 1.6 1 0 0 1 1 1 0 SLBB domain ThiS PF02597.20 EME71842.1 - 0.082 13.6 0.0 0.22 12.2 0.0 1.7 1 1 0 1 1 1 0 ThiS family Kei1 PF08552.11 EME71843.1 - 0.41 10.5 3.0 0.48 10.3 3.0 1.1 1 0 0 1 1 1 0 Inositolphosphorylceramide synthase subunit Kei1 DUF2846 PF11008.8 EME71844.1 - 0.0016 18.4 0.0 0.0026 17.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2846) Na_H_Exchanger PF00999.21 EME71845.1 - 4.4e-37 127.8 46.8 5.1e-37 127.6 46.8 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family BPD_transp_1 PF00528.22 EME71846.1 - 7.5e-14 51.9 18.7 7.5e-14 51.9 18.7 2.0 2 0 0 2 2 2 2 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 EME71847.1 - 2.4e-15 56.7 21.1 1.6e-14 54.1 21.1 2.0 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 EME71848.1 - 2.2e-34 118.9 0.0 3.5e-34 118.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 EME71848.1 - 6.9e-18 64.6 0.1 1.8e-17 63.2 0.1 1.8 1 0 0 1 1 1 1 TOBE domain AAA_21 PF13304.6 EME71848.1 - 1.8e-05 24.7 0.1 0.059 13.2 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 EME71848.1 - 6.3e-05 22.5 0.0 0.0015 18.0 0.0 2.0 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain CysA_C_terminal PF17850.1 EME71848.1 - 0.0023 18.5 0.6 0.012 16.2 0.1 2.5 3 0 0 3 3 3 1 CysA C-terminal regulatory domain AAA_16 PF13191.6 EME71848.1 - 0.0044 17.4 0.1 0.01 16.3 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_28 PF13521.6 EME71848.1 - 0.0077 16.5 0.1 0.018 15.3 0.1 1.6 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 EME71848.1 - 0.0091 16.3 0.5 0.05 13.9 0.5 2.0 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 EME71848.1 - 0.03 14.2 0.0 0.057 13.3 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_25 PF13481.6 EME71848.1 - 0.033 13.8 0.0 0.27 10.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 EME71848.1 - 0.054 13.9 0.2 0.46 10.9 0.2 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 EME71848.1 - 0.075 12.8 0.0 0.19 11.5 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain NACHT PF05729.12 EME71848.1 - 0.18 11.7 0.2 0.36 10.7 0.2 1.4 1 0 0 1 1 1 0 NACHT domain GlcV_C_terminal PF17847.1 EME71848.1 - 0.18 12.3 0.0 0.35 11.3 0.0 1.4 1 0 0 1 1 1 0 Glucose ABC transporter C-terminal domain AAA_23 PF13476.6 EME71848.1 - 0.19 12.2 0.1 0.31 11.5 0.1 1.3 1 0 0 1 1 1 0 AAA domain SBP_bac_8 PF13416.6 EME71849.1 - 1.7e-36 126.5 0.6 2.1e-36 126.2 0.6 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 EME71849.1 - 6.4e-25 88.0 0.1 9e-25 87.5 0.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 EME71849.1 - 4.1e-20 73.0 6.4 5.4e-20 72.6 6.4 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 EME71849.1 - 3.1e-11 43.4 1.6 7e-11 42.3 1.6 1.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein Lipoprotein_8 PF02030.15 EME71849.1 - 0.00014 20.7 0.7 0.0064 15.3 0.1 2.1 2 0 0 2 2 2 2 Hypothetical lipoprotein (MG045 family) SSF PF00474.17 EME71850.1 - 7.7e-109 364.2 37.3 1.2e-108 363.6 37.3 1.3 1 0 0 1 1 1 1 Sodium:solute symporter family DUF2818 PF10993.8 EME71850.1 - 0.11 13.1 4.9 0.11 13.0 0.1 3.4 4 0 0 4 4 4 0 Protein of unknown function (DUF2818) DUF485 PF04341.12 EME71851.1 - 9.5e-32 108.8 0.1 1.1e-31 108.6 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function, DUF485 Yip1 PF04893.17 EME71851.1 - 0.0015 18.3 0.3 0.0019 18.0 0.3 1.0 1 0 0 1 1 1 1 Yip1 domain DUF4040 PF13244.6 EME71851.1 - 0.0025 17.9 3.4 0.0046 17.1 3.2 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF4040) dCache_2 PF08269.11 EME71852.1 - 6.3e-55 186.4 0.0 9.7e-55 185.8 0.0 1.2 1 0 0 1 1 1 1 Cache domain sCache_2 PF17200.4 EME71852.1 - 1.4e-52 177.6 0.0 1.7e-30 106.0 0.0 2.3 1 1 1 2 2 2 2 Single Cache domain 2 Cache_3-Cache_2 PF17201.4 EME71852.1 - 3.4e-23 82.3 0.0 4.8e-15 55.6 0.0 2.2 1 1 1 2 2 2 2 Cache 3/Cache 2 fusion domain HATPase_c PF02518.26 EME71852.1 - 8.3e-17 61.7 0.0 1.7e-16 60.7 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 EME71852.1 - 8e-15 55.0 0.0 1.9e-14 53.8 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain HAMP PF00672.25 EME71852.1 - 6e-14 52.2 0.9 3.7e-13 49.6 0.9 2.6 1 0 0 1 1 1 1 HAMP domain PAS_4 PF08448.10 EME71852.1 - 2e-13 50.6 0.0 5.9e-13 49.0 0.0 1.9 1 0 0 1 1 1 1 PAS fold HisKA PF00512.25 EME71852.1 - 1.3e-08 34.7 0.4 5.6e-08 32.7 0.0 2.3 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain dCache_1 PF02743.18 EME71852.1 - 1.7e-08 34.6 0.8 9.5e-05 22.3 0.1 3.5 3 1 1 4 4 4 3 Cache domain sCache_3_2 PF17203.4 EME71852.1 - 0.00017 21.8 0.1 0.59 10.3 0.0 2.9 3 0 0 3 3 3 2 Single cache domain 3 HATPase_c_2 PF13581.6 EME71852.1 - 0.0049 16.8 0.0 0.032 14.2 0.0 2.3 2 1 1 3 3 3 1 Histidine kinase-like ATPase domain PAS_8 PF13188.7 EME71852.1 - 0.029 14.4 0.1 0.15 12.1 0.0 2.3 2 0 0 2 2 2 0 PAS domain PAS PF00989.25 EME71852.1 - 0.032 14.2 0.0 0.13 12.2 0.0 2.1 2 0 0 2 2 2 0 PAS fold Response_reg PF00072.24 EME71853.1 - 4.8e-25 87.9 0.0 7.2e-25 87.3 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 EME71853.1 - 1.6e-19 69.7 0.0 4.4e-19 68.3 0.0 1.8 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal AMP-binding PF00501.28 EME71854.1 - 2.7e-80 270.1 0.0 3.5e-80 269.7 0.0 1.2 1 0 0 1 1 1 1 AMP-binding enzyme ACAS_N PF16177.5 EME71854.1 - 7.2e-25 86.7 4.2 7.2e-25 86.7 4.2 2.0 2 0 0 2 2 2 1 Acetyl-coenzyme A synthetase N-terminus AMP-binding_C PF13193.6 EME71854.1 - 5.1e-23 81.9 0.5 1.1e-22 80.7 0.5 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain DUF465 PF04325.13 EME71855.1 - 2.6e-12 46.5 3.4 3.4e-12 46.2 3.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF465) Flavoprotein PF02441.19 EME71856.1 - 6.7e-16 58.4 0.0 8.5e-16 58.1 0.0 1.1 1 0 0 1 1 1 1 Flavoprotein PFK PF00365.20 EME71858.1 - 1.1e-96 323.5 1.9 1.3e-96 323.3 1.9 1.0 1 0 0 1 1 1 1 Phosphofructokinase NAD_kinase PF01513.21 EME71858.1 - 0.00021 20.6 0.1 0.00032 20.0 0.1 1.3 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 EME71858.1 - 0.016 14.8 0.1 0.046 13.4 0.1 1.8 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain Peptidase_S66 PF02016.15 EME71858.1 - 0.13 12.4 0.0 0.3 11.2 0.0 1.6 1 0 0 1 1 1 0 LD-carboxypeptidase N-terminal domain DUF465 PF04325.13 EME71859.1 - 1.4e-15 57.0 3.1 1.8e-15 56.7 3.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF465) DivIC PF04977.15 EME71859.1 - 0.0097 15.7 1.9 1.3 8.8 0.0 2.0 2 0 0 2 2 2 2 Septum formation initiator Prefoldin_2 PF01920.20 EME71859.1 - 0.03 14.3 3.2 2.4 8.1 0.6 2.0 1 1 0 2 2 2 0 Prefoldin subunit DUF713 PF05218.14 EME71859.1 - 0.056 13.2 0.1 0.06 13.1 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF713) HMMR_C PF15908.5 EME71859.1 - 0.058 13.7 1.4 2.6 8.3 0.0 2.0 1 1 1 2 2 2 0 Hyaluronan mediated motility receptor C-terminal Spc7 PF08317.11 EME71859.1 - 0.064 12.1 0.9 0.072 12.0 0.9 1.0 1 0 0 1 1 1 0 Spc7 kinetochore protein DUF4140 PF13600.6 EME71859.1 - 0.4 11.2 3.7 4.7 7.7 0.2 2.0 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) DASH_Spc19 PF08287.11 EME71859.1 - 3 7.7 7.6 3.6 7.5 2.3 1.9 1 1 1 2 2 2 0 Spc19 HPPK PF01288.20 EME71860.1 - 6.4e-34 116.8 0.0 8e-34 116.5 0.0 1.1 1 0 0 1 1 1 1 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) FolB PF02152.18 EME71861.1 - 8.8e-26 90.6 1.4 1e-25 90.4 1.4 1.0 1 0 0 1 1 1 1 Dihydroneopterin aldolase PdxJ PF03740.13 EME71862.1 - 1.3e-97 325.6 0.7 1.4e-97 325.4 0.7 1.0 1 0 0 1 1 1 1 Pyridoxal phosphate biosynthesis protein PdxJ AP_endonuc_2 PF01261.24 EME71862.1 - 0.0006 19.3 1.8 0.0014 18.2 1.0 2.1 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel PEP_mutase PF13714.6 EME71862.1 - 0.022 14.2 0.5 0.052 13.0 0.1 1.7 2 0 0 2 2 2 0 Phosphoenolpyruvate phosphomutase HD_4 PF13328.6 EME71863.1 - 2.6e-46 157.2 0.1 4.7e-46 156.4 0.1 1.4 1 0 0 1 1 1 1 HD domain RelA_SpoT PF04607.17 EME71863.1 - 1.5e-37 128.4 0.0 5.1e-37 126.7 0.0 2.0 2 0 0 2 2 2 1 Region found in RelA / SpoT proteins TGS PF02824.21 EME71863.1 - 3.1e-20 72.0 0.0 9e-20 70.5 0.0 1.8 2 0 0 2 2 2 1 TGS domain ACT_4 PF13291.6 EME71863.1 - 1.5e-19 70.4 0.7 3.9e-19 69.0 0.7 1.8 1 0 0 1 1 1 1 ACT domain HD PF01966.22 EME71863.1 - 1.3e-08 35.1 0.3 2.5e-08 34.2 0.3 1.5 1 0 0 1 1 1 1 HD domain ACT PF01842.25 EME71863.1 - 0.00028 20.6 0.6 0.0028 17.4 0.2 2.5 2 0 0 2 2 2 1 ACT domain ThiS PF02597.20 EME71863.1 - 0.014 16.0 0.0 0.048 14.3 0.0 1.9 1 0 0 1 1 1 0 ThiS family RNA_pol_Rpb6 PF01192.22 EME71864.1 - 3.8e-14 52.3 0.0 5.6e-14 51.8 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb6 NYN PF01936.18 EME71865.1 - 1.6e-38 132.5 0.0 2e-38 132.2 0.0 1.0 1 0 0 1 1 1 1 NYN domain FlxA PF14282.6 EME71865.1 - 0.028 14.4 1.0 0.041 13.9 1.0 1.2 1 0 0 1 1 1 0 FlxA-like protein UDG PF03167.19 EME71866.1 - 1.7e-26 93.1 0.0 2e-26 92.8 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily Hemerythrin PF01814.23 EME71867.1 - 5.4e-14 52.9 4.8 6.1e-14 52.8 4.8 1.0 1 0 0 1 1 1 1 Hemerythrin HHE cation binding domain B3_4 PF03483.17 EME71867.1 - 0.018 14.7 0.0 0.023 14.4 0.0 1.1 1 0 0 1 1 1 0 B3/4 domain GGDEF PF00990.21 EME71868.1 - 2.8e-48 163.7 0.0 5e-48 162.9 0.0 1.5 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain PAS_9 PF13426.7 EME71868.1 - 6.7e-31 106.6 0.0 1.2e-15 57.6 0.0 2.6 2 0 0 2 2 2 2 PAS domain PAS PF00989.25 EME71868.1 - 4.8e-21 74.9 0.1 1.1e-11 44.8 0.0 2.6 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.10 EME71868.1 - 1.2e-14 54.4 2.6 4.7e-06 26.8 0.0 3.7 3 0 0 3 3 3 2 PAS fold PAS_3 PF08447.12 EME71868.1 - 6.7e-14 51.9 0.2 9.1e-06 25.9 0.0 2.8 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.7 EME71868.1 - 9.6e-12 44.6 0.0 2.2e-06 27.5 0.0 3.0 2 0 0 2 2 2 2 PAS domain PilJ PF13675.6 EME71868.1 - 2.8e-11 43.5 0.1 1.5e-10 41.1 0.1 2.2 2 1 0 2 2 2 1 Type IV pili methyl-accepting chemotaxis transducer N-term PAS_7 PF12860.7 EME71868.1 - 5.7e-06 26.5 0.0 0.25 11.5 0.0 4.3 3 1 0 3 3 3 2 PAS fold PAS_12 PF18095.1 EME71868.1 - 9.9e-06 25.3 0.0 0.099 12.3 0.0 2.4 2 0 0 2 2 2 2 UPF0242 C-terminal PAS-like domain T2SSF PF00482.23 EME71868.1 - 1.7 8.6 8.9 0.21 11.6 0.6 3.2 3 0 0 3 3 3 0 Type II secretion system (T2SS), protein F tRNA-synt_1 PF00133.22 EME71869.1 - 3.9e-213 709.1 0.4 7.2e-212 704.9 0.3 2.3 2 1 0 2 2 2 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 EME71869.1 - 1.1e-38 132.5 0.0 1.9e-38 131.8 0.0 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 EME71869.1 - 4.3e-21 75.1 0.3 6e-07 28.6 0.0 3.8 3 1 0 3 3 3 3 tRNA synthetases class I (M) Val_tRNA-synt_C PF10458.9 EME71869.1 - 6.8e-18 64.7 4.4 1.4e-17 63.7 4.4 1.6 1 0 0 1 1 1 1 Valyl tRNA synthetase tRNA binding arm tRNA-synt_1_2 PF13603.6 EME71869.1 - 4.2e-06 26.4 0.1 0.0011 18.5 0.0 2.3 1 1 1 2 2 2 2 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.19 EME71869.1 - 1.5e-05 24.5 0.0 0.0016 17.8 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain ABC_tran_CTD PF16326.5 EME71869.1 - 0.00012 22.2 0.8 0.00045 20.4 0.8 2.0 1 0 0 1 1 1 1 ABC transporter C-terminal domain tRNA-synt_1f PF01921.18 EME71869.1 - 0.001 18.1 0.0 0.0017 17.3 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (K) DUF1192 PF06698.11 EME71869.1 - 0.057 13.5 0.1 0.18 11.9 0.1 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF1192) DUF2789 PF10982.8 EME71869.1 - 0.14 12.4 0.1 0.43 10.8 0.1 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF2789) DUF2497 PF10691.9 EME71870.1 - 8.2e-25 87.0 0.1 1.4e-24 86.3 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2497) RBM1CTR PF08081.11 EME71870.1 - 0.011 15.8 2.7 0.02 14.9 2.7 1.4 1 0 0 1 1 1 0 RBM1CTR (NUC064) family Trypan_PARP PF05887.11 EME71870.1 - 0.021 14.8 21.7 0.021 14.8 21.7 2.6 1 1 1 2 2 2 0 Procyclic acidic repetitive protein (PARP) OEP PF02321.18 EME71871.1 - 6.5e-58 195.7 26.6 1e-29 103.7 12.4 2.0 2 0 0 2 2 2 2 Outer membrane efflux protein Arm-DNA-bind_3 PF13356.6 EME71871.1 - 0.31 11.4 3.0 1.9 8.9 0.3 2.7 2 0 0 2 2 2 0 Arm DNA-binding domain PCMT PF01135.19 EME71872.1 - 3.2e-33 115.2 0.0 3.9e-33 115.0 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RrnaAD PF00398.20 EME71872.1 - 7.5e-08 31.8 0.0 9.4e-08 31.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_31 PF13847.6 EME71872.1 - 0.016 15.0 0.0 0.024 14.4 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_11 PF08241.12 EME71872.1 - 0.04 14.5 0.1 0.085 13.5 0.1 1.6 1 1 0 1 1 1 0 Methyltransferase domain ECH_1 PF00378.20 EME71873.1 - 2.8e-35 121.8 0.0 3.1e-35 121.7 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 EME71873.1 - 1.4e-16 60.9 0.3 4.6e-14 52.7 0.1 2.1 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase MCPsignal PF00015.21 EME71874.1 - 2.2e-16 60.1 3.4 2.5e-16 60.0 3.4 1.3 1 0 0 1 1 1 1 Methyl-accepting chemotaxis protein (MCP) signalling domain Sel1 PF08238.12 EME71875.1 - 7.3e-41 137.7 17.3 3e-09 37.3 0.3 6.6 6 0 0 6 6 6 6 Sel1 repeat Trypsin_2 PF13365.6 EME71875.1 - 2.6e-24 86.8 1.0 5.6e-24 85.8 0.2 2.0 2 0 0 2 2 2 1 Trypsin-like peptidase domain Trypsin PF00089.26 EME71875.1 - 8.9e-09 35.5 0.0 1.6e-08 34.7 0.0 1.3 1 0 0 1 1 1 1 Trypsin Peptidase_S46 PF10459.9 EME71875.1 - 0.0015 17.3 0.2 0.19 10.4 0.0 2.3 2 0 0 2 2 2 2 Peptidase S46 Raptor_N PF14538.6 EME71875.1 - 0.075 13.0 0.0 1.1 9.3 0.0 2.7 2 1 1 3 3 3 0 Raptor N-terminal CASPase like domain Peptidase_S32 PF05579.13 EME71875.1 - 0.097 11.9 0.6 11 5.1 0.1 2.4 2 0 0 2 2 2 0 Equine arteritis virus serine endopeptidase S32 TPR_16 PF13432.6 EME71875.1 - 0.18 12.5 16.4 1.1 10.0 6.2 4.3 3 1 1 4 4 4 0 Tetratricopeptide repeat Hemerythrin PF01814.23 EME71876.1 - 2.7e-12 47.5 5.3 3.1e-12 47.3 5.3 1.1 1 0 0 1 1 1 1 Hemerythrin HHE cation binding domain TipAS PF07739.13 EME71876.1 - 0.036 14.6 1.1 0.056 14.0 1.1 1.4 1 1 0 1 1 1 0 TipAS antibiotic-recognition domain DUF1722 PF08349.11 EME71876.1 - 0.085 13.1 0.3 0.15 12.3 0.3 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1722) Complex1_LYR_2 PF13233.6 EME71876.1 - 0.47 11.2 3.4 1 10.2 3.4 1.8 1 1 0 1 1 1 0 Complex1_LYR-like AIM24 PF01987.17 EME71877.1 - 0.11 12.3 0.0 0.12 12.1 0.0 1.1 1 0 0 1 1 1 0 Mitochondrial biogenesis AIM24 cNMP_binding PF00027.29 EME71878.1 - 1.4e-11 44.3 0.0 7.1e-10 38.8 0.0 2.7 2 0 0 2 2 2 1 Cyclic nucleotide-binding domain Lactamase_B_2 PF12706.7 EME71878.1 - 1.3e-08 34.6 0.2 2.3e-08 33.8 0.2 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 EME71878.1 - 6.6e-07 29.5 0.2 1.5e-06 28.3 0.2 1.6 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily TPR_12 PF13424.6 EME71879.1 - 4.9e-86 283.1 69.1 5.1e-15 55.5 3.4 10.8 3 2 8 11 11 11 11 Tetratricopeptide repeat CHAT PF12770.7 EME71879.1 - 6.2e-77 258.9 0.0 6.2e-77 258.9 0.0 2.8 4 0 0 4 4 4 1 CHAT domain TPR_10 PF13374.6 EME71879.1 - 4.2e-73 239.5 30.5 3e-09 36.5 0.0 14.1 14 0 0 14 14 14 12 Tetratricopeptide repeat TPR_7 PF13176.6 EME71879.1 - 4.3e-16 57.7 20.1 0.02 14.9 0.0 11.8 11 0 0 11 11 11 4 Tetratricopeptide repeat TPR_MalT PF17874.1 EME71879.1 - 2e-15 57.0 35.8 2.6e-08 33.6 1.7 5.0 1 1 4 5 5 5 4 MalT-like TPR region TPR_1 PF00515.28 EME71879.1 - 1.5e-12 46.7 28.0 0.0091 15.8 0.4 10.9 12 0 0 12 12 12 4 Tetratricopeptide repeat TPR_2 PF07719.17 EME71879.1 - 6.9e-12 44.5 38.4 0.0089 16.1 0.6 12.4 12 0 0 12 12 12 3 Tetratricopeptide repeat TPR_8 PF13181.6 EME71879.1 - 2.2e-10 39.9 30.9 0.25 11.6 0.1 11.9 13 0 0 13 13 13 3 Tetratricopeptide repeat TPR_19 PF14559.6 EME71879.1 - 3.3e-09 37.1 45.4 0.055 14.0 4.7 10.2 4 3 6 10 10 9 3 Tetratricopeptide repeat TPR_16 PF13432.6 EME71879.1 - 4.1e-07 30.6 54.8 0.047 14.4 1.3 11.3 5 4 3 9 9 8 3 Tetratricopeptide repeat TPR_17 PF13431.6 EME71879.1 - 6.2e-06 26.2 10.8 3.2 8.4 0.2 7.7 7 0 0 7 7 7 1 Tetratricopeptide repeat TPR_4 PF07721.14 EME71879.1 - 0.0011 19.4 31.0 1.8 9.4 0.1 10.7 12 0 0 12 12 9 3 Tetratricopeptide repeat RPN6_N PF18055.1 EME71879.1 - 0.01 16.2 1.5 3.8 7.9 0.1 3.3 3 0 0 3 3 3 0 26S proteasome regulatory subunit RPN6 N-terminal domain TPR_14 PF13428.6 EME71879.1 - 0.014 16.2 60.4 3.8 8.6 2.1 13.7 12 2 3 15 15 14 0 Tetratricopeptide repeat PPR PF01535.20 EME71879.1 - 0.13 12.6 0.1 15 6.1 0.0 3.8 3 0 0 3 3 3 0 PPR repeat RPN7 PF10602.9 EME71879.1 - 5.7 6.6 8.6 0.97 9.1 0.3 3.8 5 0 0 5 5 4 0 26S proteasome subunit RPN7 TPR_6 PF13174.6 EME71879.1 - 6.4 7.6 0.0 6.4 7.6 0.0 8.5 9 0 0 9 9 8 0 Tetratricopeptide repeat TPR_20 PF14561.6 EME71879.1 - 6.9 7.1 24.0 44 4.5 1.5 8.0 4 3 2 7 7 7 0 Tetratricopeptide repeat Guanylate_cyc PF00211.20 EME71880.1 - 3.3e-32 111.6 0.0 6.3e-32 110.7 0.0 1.3 1 0 0 1 1 1 1 Adenylate and Guanylate cyclase catalytic domain CHASE2 PF05226.11 EME71880.1 - 4.4e-30 105.2 0.4 7.4e-30 104.5 0.4 1.3 1 0 0 1 1 1 1 CHASE2 domain Peptidase_M50B PF13398.6 EME71880.1 - 0.025 14.2 4.4 0.057 13.1 4.4 1.5 1 0 0 1 1 1 0 Peptidase M50B-like Peptidase_S11 PF00768.20 EME71882.1 - 1.9e-50 171.6 0.0 2.4e-50 171.2 0.0 1.1 1 0 0 1 1 1 1 D-alanyl-D-alanine carboxypeptidase Beta-lactamase2 PF13354.6 EME71882.1 - 4.4e-10 39.5 0.0 5.4e-10 39.2 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase enzyme family Peptidase_S13 PF02113.15 EME71882.1 - 0.0047 15.7 0.1 0.045 12.5 0.0 2.0 2 0 0 2 2 2 1 D-Ala-D-Ala carboxypeptidase 3 (S13) family ABC_membrane_2 PF06472.15 EME71883.1 - 3.7e-42 144.6 0.0 4.7e-42 144.3 0.0 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region 2 SbmA_BacA PF05992.12 EME71883.1 - 8e-19 68.2 0.2 1.2e-18 67.7 0.2 1.1 1 0 0 1 1 1 1 SbmA/BacA-like family ABC_tran PF00005.27 EME71883.1 - 4.2e-05 24.1 0.0 0.0001 22.8 0.0 1.7 1 1 0 1 1 1 1 ABC transporter ABC_membrane PF00664.23 EME71883.1 - 0.064 12.9 3.1 0.28 10.8 0.4 2.2 2 0 0 2 2 2 0 ABC transporter transmembrane region COX2 PF00116.20 EME71884.1 - 0.00028 20.8 0.0 0.00039 20.3 0.0 1.2 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, periplasmic domain COX1 PF00115.20 EME71885.1 - 5.2e-14 51.9 32.7 5.2e-14 51.9 32.7 1.5 1 1 0 1 1 1 1 Cytochrome C and Quinol oxidase polypeptide I Cytochrome_B PF00033.19 EME71887.1 - 2.2e-19 70.0 13.3 3.2e-19 69.5 13.3 1.2 1 0 0 1 1 1 1 Cytochrome b/b6/petB FlpD PF02662.16 EME71887.1 - 1.9e-13 50.5 0.0 8.7e-13 48.4 0.0 1.9 1 1 1 2 2 2 1 Methyl-viologen-reducing hydrogenase, delta subunit Cytochrom_B_N_2 PF13631.6 EME71887.1 - 1.9e-10 41.0 8.3 4e-10 40.0 8.3 1.6 1 0 0 1 1 1 1 Cytochrome b(N-terminal)/b6/petB Fer4_6 PF12837.7 EME71887.1 - 5.7e-08 32.5 13.0 0.0013 18.7 1.7 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.27 EME71887.1 - 1.1e-07 31.4 14.2 0.0002 21.0 4.6 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 EME71887.1 - 1.2e-07 32.2 7.6 2.6e-07 31.1 7.6 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 EME71887.1 - 2.7e-06 27.5 8.4 5.3e-06 26.5 8.4 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 EME71887.1 - 7.6e-06 26.0 4.9 0.029 14.5 0.3 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 EME71887.1 - 2.9e-05 24.1 11.0 0.00036 20.6 11.6 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 EME71887.1 - 6.5e-05 22.8 12.7 0.013 15.5 3.6 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 EME71887.1 - 0.0002 21.7 9.7 0.0024 18.3 11.1 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain 7TMR-DISM_7TM PF07695.11 EME71887.1 - 0.0032 17.4 4.3 0.0032 17.4 4.3 2.3 3 0 0 3 3 3 1 7TM diverse intracellular signalling Fer4_4 PF12800.7 EME71887.1 - 0.0083 16.6 13.6 0.51 11.0 2.6 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 EME71887.1 - 0.069 13.7 14.1 0.49 11.0 2.3 2.4 1 1 2 3 3 3 0 4Fe-4S dicluster domain Mid2 PF04478.12 EME71887.1 - 0.1 12.5 0.1 5.6 6.8 0.0 2.4 2 0 0 2 2 2 0 Mid2 like cell wall stress sensor Fer4_15 PF13459.6 EME71887.1 - 0.12 13.2 5.3 5.7 7.8 0.4 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain Cytochrom_B_C PF00032.17 EME71887.1 - 0.17 12.2 0.2 0.17 12.2 0.2 2.1 2 0 0 2 2 1 0 Cytochrome b(C-terminal)/b6/petD Fer4_22 PF17179.4 EME71887.1 - 0.32 11.8 7.0 1.5 9.7 0.8 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 EME71887.1 - 0.67 10.9 12.5 1.3e+02 3.6 12.5 2.3 1 1 0 1 1 1 0 4Fe-4S double cluster binding domain SCO1-SenC PF02630.14 EME71888.1 - 1.6e-19 70.2 0.0 2.7e-19 69.4 0.0 1.4 1 0 0 1 1 1 1 SCO1/SenC Redoxin PF08534.10 EME71888.1 - 1.9e-06 27.7 0.0 2.7e-06 27.2 0.0 1.2 1 0 0 1 1 1 1 Redoxin AhpC-TSA PF00578.21 EME71888.1 - 0.00098 19.0 0.0 0.0017 18.2 0.0 1.4 1 1 0 1 1 1 1 AhpC/TSA family DUF5631 PF18645.1 EME71888.1 - 0.037 14.4 0.0 0.071 13.5 0.0 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5631) GSHPx PF00255.19 EME71888.1 - 0.16 11.5 0.0 0.28 10.8 0.0 1.4 1 0 0 1 1 1 0 Glutathione peroxidase UbiA PF01040.18 EME71889.1 - 1.3e-46 159.0 30.9 1.8e-46 158.5 30.9 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family COX1 PF00115.20 EME71890.1 - 5.7e-63 213.3 59.8 5.7e-63 213.3 59.8 1.7 1 1 1 2 2 2 1 Cytochrome C and Quinol oxidase polypeptide I COX2 PF00116.20 EME71891.1 - 0.00079 19.3 0.0 0.0012 18.7 0.0 1.3 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, periplasmic domain Cupredoxin_1 PF13473.6 EME71891.1 - 0.045 13.9 0.0 0.08 13.1 0.0 1.4 1 0 0 1 1 1 0 Cupredoxin-like domain COX15-CtaA PF02628.15 EME71893.1 - 1.1e-106 356.5 24.6 1.3e-106 356.4 24.6 1.0 1 0 0 1 1 1 1 Cytochrome oxidase assembly protein AhpC-TSA PF00578.21 EME71894.1 - 3e-15 56.3 0.0 4.1e-15 55.8 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 EME71894.1 - 5.7e-14 52.1 0.0 6.8e-14 51.8 0.0 1.1 1 0 0 1 1 1 1 Redoxin Thioredoxin PF00085.20 EME71894.1 - 1.8e-10 40.7 0.1 1.4e-06 28.3 0.1 2.2 1 1 1 2 2 2 2 Thioredoxin Thioredoxin_8 PF13905.6 EME71894.1 - 1.6e-08 34.8 0.0 2.5e-08 34.2 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_2 PF13098.6 EME71894.1 - 1.5e-05 25.4 0.0 3.1e-05 24.4 0.0 1.6 1 1 0 1 1 1 1 Thioredoxin-like domain TraF PF13728.6 EME71894.1 - 0.0011 18.9 0.0 0.0091 15.8 0.0 2.1 1 1 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin_9 PF14595.6 EME71894.1 - 0.044 13.6 0.0 0.063 13.1 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin Methyltransf_30 PF05430.11 EME71895.1 - 0.0035 17.2 0.0 0.0072 16.2 0.0 1.4 1 0 0 1 1 1 1 S-adenosyl-L-methionine-dependent methyltransferase Spermine_synth PF01564.17 EME71895.1 - 0.012 15.0 0.0 0.02 14.3 0.0 1.2 1 0 0 1 1 1 0 Spermine/spermidine synthase domain MTS PF05175.14 EME71895.1 - 0.019 14.5 0.1 0.07 12.7 0.0 2.0 2 1 0 2 2 2 0 Methyltransferase small domain Methyltransf_25 PF13649.6 EME71895.1 - 0.095 13.4 0.0 0.29 11.9 0.0 1.9 2 0 0 2 2 2 0 Methyltransferase domain HSP20 PF00011.21 EME71896.1 - 2.1e-16 59.9 0.0 2.9e-16 59.5 0.0 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 EME71896.1 - 2.9e-05 23.5 0.0 5e-05 22.8 0.0 1.4 1 0 0 1 1 1 1 HSP20-like domain found in ArsA DUF179 PF02622.15 EME71896.1 - 0.21 11.5 0.0 0.26 11.2 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized ACR, COG1678 SBP_bac_3 PF00497.20 EME71897.1 - 5.8e-07 29.2 0.0 1.9e-06 27.5 0.0 1.7 2 0 0 2 2 2 1 Bacterial extracellular solute-binding proteins, family 3 HATPase_c PF02518.26 EME71898.1 - 1.5e-16 60.9 0.0 2.9e-16 60.0 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHASE5 PF17149.4 EME71898.1 - 8.1e-09 35.4 0.1 3e-08 33.6 0.0 2.0 2 0 0 2 2 2 1 Periplasmic sensor domain found in signal transduction proteins HisKA PF00512.25 EME71898.1 - 1.2e-06 28.4 2.4 6.4e-06 26.1 0.2 3.3 3 1 0 3 3 3 1 His Kinase A (phospho-acceptor) domain HAMP PF00672.25 EME71898.1 - 0.00016 22.0 0.3 0.00086 19.6 0.3 2.4 1 0 0 1 1 1 1 HAMP domain PAS_4 PF08448.10 EME71898.1 - 0.00021 21.5 2.0 0.00022 21.4 0.4 2.0 2 0 0 2 2 2 1 PAS fold HGD-D PF06050.13 EME71898.1 - 0.18 11.6 0.2 0.52 10.0 0.1 1.7 2 0 0 2 2 2 0 2-hydroxyglutaryl-CoA dehydratase, D-component DUF1484 PF07363.11 EME71898.1 - 0.27 12.3 3.4 0.23 12.5 0.9 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1484) APS_kinase PF01583.20 EME71899.1 - 1.2e-65 220.3 0.0 2.1e-65 219.4 0.0 1.4 1 0 0 1 1 1 1 Adenylylsulphate kinase GTP_EFTU PF00009.27 EME71899.1 - 4.9e-42 143.7 0.0 8.4e-42 142.9 0.0 1.4 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain MMR_HSR1 PF01926.23 EME71899.1 - 1.6e-08 34.6 0.0 1.3e-06 28.4 0.0 3.1 2 1 0 2 2 2 1 50S ribosome-binding GTPase AAA_33 PF13671.6 EME71899.1 - 5.6e-08 33.0 0.0 5.9e-06 26.5 0.0 2.5 2 1 0 2 2 2 1 AAA domain GTP_EFTU_D2 PF03144.25 EME71899.1 - 2.3e-06 27.9 0.3 5e-05 23.6 0.1 2.6 2 0 0 2 2 2 1 Elongation factor Tu domain 2 AAA_16 PF13191.6 EME71899.1 - 8.1e-06 26.3 0.1 0.0035 17.7 0.0 2.7 2 1 0 2 2 2 1 AAA ATPase domain RsgA_GTPase PF03193.16 EME71899.1 - 1.6e-05 24.9 0.4 0.093 12.6 0.0 3.4 2 1 1 3 3 3 1 RsgA GTPase GTP_EFTU_D3 PF03143.17 EME71899.1 - 1.8e-05 25.0 0.0 6.3e-05 23.2 0.0 1.9 1 0 0 1 1 1 1 Elongation factor Tu C-terminal domain AAA_18 PF13238.6 EME71899.1 - 2.3e-05 24.9 0.0 0.0081 16.7 0.0 2.6 2 1 0 2 2 2 1 AAA domain AAA_29 PF13555.6 EME71899.1 - 0.00046 19.9 0.1 0.13 12.0 0.1 2.8 3 0 0 3 3 2 1 P-loop containing region of AAA domain ABC_tran PF00005.27 EME71899.1 - 0.00058 20.4 0.0 0.35 11.4 0.0 2.5 2 0 0 2 2 2 1 ABC transporter GTP_EFTU_D4 PF14578.6 EME71899.1 - 0.00068 19.5 0.1 0.0032 17.3 0.1 2.1 1 0 0 1 1 1 1 Elongation factor Tu domain 4 CbiA PF01656.23 EME71899.1 - 0.0017 18.4 0.0 0.0054 16.8 0.0 1.9 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Zeta_toxin PF06414.12 EME71899.1 - 0.0023 17.3 0.1 0.016 14.5 0.0 2.2 2 0 0 2 2 2 1 Zeta toxin MeaB PF03308.16 EME71899.1 - 0.0033 16.5 1.0 0.0085 15.1 0.1 2.0 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB ATP_bind_1 PF03029.17 EME71899.1 - 0.0037 17.1 0.1 0.47 10.2 0.0 3.0 3 0 0 3 3 3 1 Conserved hypothetical ATP binding protein MipZ PF09140.11 EME71899.1 - 0.0067 15.7 0.1 0.22 10.8 0.0 2.5 2 0 0 2 2 2 1 ATPase MipZ cobW PF02492.19 EME71899.1 - 0.015 14.9 0.7 6.4 6.3 0.0 3.4 3 0 0 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain NTPase_1 PF03266.15 EME71899.1 - 0.016 15.1 0.5 0.92 9.4 0.0 2.5 2 0 0 2 2 2 0 NTPase AAA_22 PF13401.6 EME71899.1 - 0.016 15.4 0.6 1.1 9.5 0.1 2.7 2 1 0 2 2 2 0 AAA domain AAA_24 PF13479.6 EME71899.1 - 0.053 13.2 0.0 0.74 9.5 0.0 2.3 2 0 0 2 2 2 0 AAA domain ParA PF10609.9 EME71899.1 - 0.054 12.9 0.0 0.23 10.9 0.1 1.9 2 0 0 2 2 2 0 NUBPL iron-transfer P-loop NTPase AAA_25 PF13481.6 EME71899.1 - 0.06 12.9 0.0 0.19 11.3 0.0 1.9 1 0 0 1 1 1 0 AAA domain Roc PF08477.13 EME71899.1 - 0.071 13.3 0.3 1.9 8.7 0.1 2.8 3 0 0 3 3 3 0 Ras of Complex, Roc, domain of DAPkinase PduV-EutP PF10662.9 EME71899.1 - 0.087 12.6 0.5 20 4.9 0.0 3.0 3 0 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation RNA_helicase PF00910.22 EME71899.1 - 0.1 13.0 0.0 2.9 8.3 0.0 2.5 2 0 0 2 2 2 0 RNA helicase KTI12 PF08433.10 EME71899.1 - 0.14 11.6 0.0 0.35 10.3 0.0 1.7 1 0 0 1 1 1 0 Chromatin associated protein KTI12 Dynamin_N PF00350.23 EME71899.1 - 0.15 12.1 0.0 0.7 9.9 0.0 2.1 2 0 0 2 2 2 0 Dynamin family SWI2_SNF2 PF18766.1 EME71899.1 - 0.15 11.7 0.0 0.27 10.9 0.0 1.3 1 0 0 1 1 1 0 SWI2/SNF2 ATPase SRP54 PF00448.22 EME71899.1 - 0.15 11.6 0.6 2 8.0 0.1 2.6 2 1 0 2 2 2 0 SRP54-type protein, GTPase domain FeoB_N PF02421.18 EME71899.1 - 0.15 11.5 0.2 6.1 6.3 0.0 2.9 2 1 0 2 2 2 0 Ferrous iron transport protein B PAPS_reduct PF01507.19 EME71900.1 - 1.3e-46 158.8 0.0 1.7e-46 158.4 0.0 1.1 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family DUF348 PF03990.14 EME71900.1 - 0.27 11.0 0.4 1.2 8.9 0.1 2.1 2 0 0 2 2 2 0 G5-linked-Ubiquitin-like domain PAPS_reduct PF01507.19 EME71901.1 - 1.3e-36 126.2 0.0 1.6e-36 126.0 0.0 1.1 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family NIR_SIR PF01077.22 EME71902.1 - 9.9e-43 145.4 0.0 2.4e-33 114.9 0.0 2.4 2 1 0 2 2 2 2 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 EME71902.1 - 8.6e-25 86.4 0.1 2.2e-13 49.8 0.0 3.4 3 0 0 3 3 3 2 Nitrite/Sulfite reductase ferredoxin-like half domain Rhodanese PF00581.20 EME71903.1 - 2.6e-08 34.3 0.0 6e-08 33.2 0.0 1.6 1 1 0 1 1 1 1 Rhodanese-like domain YkuD PF03734.14 EME71904.1 - 2.2e-30 106.0 0.0 3.5e-30 105.3 0.0 1.3 1 0 0 1 1 1 1 L,D-transpeptidase catalytic domain PG_binding_1 PF01471.18 EME71904.1 - 6.5e-08 32.7 0.0 1.4e-07 31.6 0.0 1.6 1 0 0 1 1 1 1 Putative peptidoglycan binding domain Peptidase_M15_2 PF05951.13 EME71905.1 - 1.6e-55 187.0 0.0 1.9e-55 186.8 0.0 1.0 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF882) Peptidase_M15_3 PF08291.11 EME71905.1 - 8.8e-14 51.5 0.1 1.4e-13 50.9 0.1 1.3 1 0 0 1 1 1 1 Peptidase M15 AFOR_N PF02730.15 EME71905.1 - 0.051 13.4 0.0 0.065 13.1 0.0 1.2 1 0 0 1 1 1 0 Aldehyde ferredoxin oxidoreductase, N-terminal domain TAT_signal PF10518.9 EME71905.1 - 0.092 12.6 0.5 0.092 12.6 0.5 2.2 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence DUF4412 PF14371.6 EME71906.1 - 0.046 13.5 0.0 1.4 8.7 0.0 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4412) Response_reg PF00072.24 EME71907.1 - 7.7e-19 67.9 0.0 1.8e-18 66.8 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.26 EME71907.1 - 6.7e-18 65.2 0.0 1.1e-17 64.5 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_2 PF13185.6 EME71907.1 - 2e-13 50.8 0.7 7.8e-13 48.9 0.1 2.3 3 0 0 3 3 3 1 GAF domain HisKA PF00512.25 EME71907.1 - 1.4e-10 41.0 0.4 1.4e-10 41.0 0.4 2.6 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain GAF PF01590.26 EME71907.1 - 2.2e-08 34.8 0.0 2.9e-07 31.2 0.0 2.7 2 0 0 2 2 2 1 GAF domain PAS PF00989.25 EME71907.1 - 2.4e-07 30.7 0.0 6.4e-07 29.4 0.0 1.8 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 EME71907.1 - 4.8e-06 26.5 0.0 1.4e-05 25.0 0.0 1.8 1 0 0 1 1 1 1 PAS domain GAF_3 PF13492.6 EME71907.1 - 0.00036 20.9 0.0 0.0011 19.3 0.0 1.8 1 0 0 1 1 1 1 GAF domain PAS_9 PF13426.7 EME71907.1 - 0.003 17.8 0.0 0.0065 16.7 0.0 1.6 1 0 0 1 1 1 1 PAS domain TusA PF01206.17 EME71907.1 - 0.0053 16.6 0.0 0.027 14.3 0.0 2.2 2 0 0 2 2 2 1 Sulfurtransferase TusA Rhodanese PF00581.20 EME71907.1 - 0.0061 17.1 0.0 0.13 12.8 0.0 2.9 3 0 0 3 3 3 1 Rhodanese-like domain HATPase_c_2 PF13581.6 EME71907.1 - 0.051 13.5 0.1 0.17 11.9 0.0 1.8 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain Response_reg PF00072.24 EME71908.1 - 1.2e-24 86.6 0.0 1.8e-24 86.0 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain GerE PF00196.19 EME71908.1 - 5.1e-19 67.6 0.4 9.4e-19 66.7 0.4 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family OKR_DC_1_N PF03709.15 EME71908.1 - 0.0035 17.6 0.0 0.0054 17.0 0.0 1.3 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, N-terminal domain Sigma70_r4_2 PF08281.12 EME71908.1 - 0.014 15.0 0.1 0.022 14.5 0.1 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 GGDEF PF00990.21 EME71909.1 - 2.4e-13 50.1 0.0 3.3e-13 49.7 0.0 1.1 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain AIRC PF00731.20 EME71910.1 - 3e-62 208.6 0.5 3.4e-62 208.4 0.5 1.0 1 0 0 1 1 1 1 AIR carboxylase ATP-grasp PF02222.22 EME71911.1 - 3.4e-50 169.9 0.0 4.9e-50 169.4 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain PurK_C PF17769.1 EME71911.1 - 5.9e-16 57.9 0.0 1.2e-15 56.9 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosylaminoimidazole carboxylase C-terminal domain PALP PF00291.25 EME71911.1 - 7.8e-05 22.2 0.0 0.00011 21.7 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme GIDA PF01134.22 EME71911.1 - 0.00053 19.2 0.4 0.00076 18.7 0.4 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A 2-Hacid_dh_C PF02826.19 EME71911.1 - 0.0012 18.2 0.0 0.0021 17.4 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 EME71911.1 - 0.0049 17.4 0.2 0.017 15.7 0.0 1.9 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.18 EME71911.1 - 0.0094 15.8 0.0 0.014 15.3 0.0 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GARS_A PF01071.19 EME71911.1 - 0.017 14.9 0.0 0.029 14.1 0.0 1.3 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AlaDh_PNT_C PF01262.21 EME71911.1 - 0.02 14.2 0.0 0.048 13.0 0.0 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_2 PF03446.15 EME71911.1 - 0.022 14.9 0.0 0.038 14.2 0.0 1.4 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Pyr_redox PF00070.27 EME71911.1 - 0.024 15.2 0.0 0.05 14.2 0.0 1.5 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase ATP-grasp_5 PF13549.6 EME71911.1 - 0.032 13.7 0.0 0.052 13.0 0.0 1.3 1 0 0 1 1 1 0 ATP-grasp domain FAD_oxidored PF12831.7 EME71911.1 - 0.033 13.6 0.4 0.051 12.9 0.4 1.2 1 0 0 1 1 1 0 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 EME71911.1 - 0.046 12.9 0.0 0.065 12.5 0.0 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase SNARE_assoc PF09335.11 EME71912.1 - 7.9e-12 45.7 6.4 7.9e-12 45.7 6.4 2.0 1 1 2 3 3 3 1 SNARE associated Golgi protein Mntp PF02659.15 EME71912.1 - 0.029 14.1 3.0 0.031 14.1 1.5 1.7 2 0 0 2 2 2 0 Putative manganese efflux pump DUF4408 PF14364.6 EME71912.1 - 0.44 10.3 0.0 0.44 10.3 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4408) ATPase_gene1 PF09527.10 EME71912.1 - 0.55 10.4 10.2 0.94 9.7 6.5 3.0 2 1 0 2 2 2 0 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter SLT PF01464.20 EME71913.1 - 3.1e-06 26.8 0.0 6.7e-06 25.8 0.0 1.5 1 1 0 1 1 1 1 Transglycosylase SLT domain DUF4113 PF13438.6 EME71914.1 - 5.8e-21 74.3 0.0 1e-20 73.5 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4113) IMS_C PF11799.8 EME71914.1 - 5e-13 49.8 0.0 8e-13 49.1 0.0 1.2 1 0 0 1 1 1 1 impB/mucB/samB family C-terminal domain DUF4160 PF13711.6 EME71916.1 - 3.9e-11 43.1 0.0 4.4e-11 42.9 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4160) Resolvase PF00239.21 EME71917.1 - 1.1e-36 126.1 0.8 1.3e-36 125.9 0.8 1.1 1 0 0 1 1 1 1 Resolvase, N terminal domain HTH_7 PF02796.15 EME71917.1 - 2e-08 34.1 0.0 4.6e-08 33.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_IclR PF09339.10 EME71917.1 - 0.0011 18.7 0.8 0.0047 16.7 0.1 2.2 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_23 PF13384.6 EME71917.1 - 0.0018 18.0 0.1 0.0046 16.7 0.1 1.6 1 0 0 1 1 1 1 Homeodomain-like domain TrmB PF01978.19 EME71917.1 - 0.0071 16.2 0.0 0.015 15.2 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_28 PF13518.6 EME71917.1 - 0.0096 16.0 0.1 0.022 14.9 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.6 EME71917.1 - 0.016 15.0 0.1 0.05 13.4 0.1 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_22 PF13309.6 EME71917.1 - 0.026 14.6 0.1 0.071 13.2 0.1 1.9 1 1 0 1 1 1 0 HTH domain Cloacin_immun PF03513.14 EME71918.1 - 0.0014 18.9 0.9 0.0017 18.7 0.9 1.1 1 0 0 1 1 1 1 Cloacin immunity protein Helicase_C PF00271.31 EME71919.1 - 1.6e-14 54.2 0.0 5.3e-14 52.5 0.0 2.0 1 0 0 1 1 1 1 Helicase conserved C-terminal domain SNF2_N PF00176.23 EME71919.1 - 4.2e-13 48.7 0.0 5.5e-11 41.8 0.0 2.3 1 1 0 1 1 1 1 SNF2 family N-terminal domain ResIII PF04851.15 EME71919.1 - 6.3e-07 29.6 0.0 5.9e-05 23.1 0.0 2.5 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD PF00270.29 EME71919.1 - 4.3e-06 26.6 0.0 0.00019 21.2 0.0 2.6 1 1 0 1 1 1 1 DEAD/DEAH box helicase AAA_10 PF12846.7 EME71919.1 - 0.071 12.0 0.2 0.16 10.8 0.0 1.7 2 0 0 2 2 2 0 AAA-like domain DUF4391 PF14335.6 EME71920.1 - 1.5e-71 240.9 0.0 1.7e-71 240.7 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4391) PGM_PMM_I PF02878.16 EME71921.1 - 0.016 14.9 0.1 0.02 14.6 0.1 1.1 1 0 0 1 1 1 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ResIII PF04851.15 EME71922.1 - 1.3e-12 48.0 0.0 2.7e-12 47.0 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD PF00270.29 EME71922.1 - 1e-05 25.4 0.0 2.3e-05 24.2 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase PhoH PF02562.16 EME71922.1 - 0.015 14.8 0.0 0.04 13.4 0.0 1.7 1 0 0 1 1 1 0 PhoH-like protein DUF521 PF04412.13 EME71922.1 - 0.15 10.8 0.0 0.3 9.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF521) DSPc PF00782.20 EME71923.1 - 2e-06 27.6 0.0 3.1e-06 27.0 0.0 1.3 1 0 0 1 1 1 1 Dual specificity phosphatase, catalytic domain Y_phosphatase PF00102.27 EME71923.1 - 0.0024 17.5 0.0 0.003 17.2 0.0 1.1 1 0 0 1 1 1 1 Protein-tyrosine phosphatase Auxin_resp PF06507.13 EME71926.1 - 0.0079 16.4 0.0 0.016 15.4 0.0 1.5 1 0 0 1 1 1 1 Auxin response factor SpoVG PF04026.12 EME71927.1 - 0.057 13.6 0.0 0.094 12.9 0.0 1.4 1 1 0 1 1 1 0 SpoVG Cytochrom_D1 PF02239.16 EME71929.1 - 3.1e-103 345.1 0.0 8.3e-103 343.7 0.0 1.6 1 1 0 1 1 1 1 Cytochrome D1 heme domain Cytochrome_CBB3 PF13442.6 EME71929.1 - 1.6e-11 44.3 0.1 4e-11 43.1 0.1 1.7 1 0 0 1 1 1 1 Cytochrome C oxidase, cbb3-type, subunit III Cytochrom_C PF00034.21 EME71929.1 - 7.2e-05 23.8 1.1 0.0011 20.0 1.1 2.3 1 1 0 1 1 1 1 Cytochrome c PQQ_3 PF13570.6 EME71929.1 - 0.00072 20.0 2.0 7 7.3 0.1 4.4 5 0 0 5 5 5 1 PQQ-like domain ANAPC4_WD40 PF12894.7 EME71929.1 - 0.00098 19.4 0.0 3.1 8.2 0.0 3.5 3 1 1 4 4 4 2 Anaphase-promoting complex subunit 4 WD40 domain Lactonase PF10282.9 EME71929.1 - 0.0039 16.5 0.0 0.034 13.4 0.0 2.0 2 0 0 2 2 2 1 Lactonase, 7-bladed beta-propeller DUF1513 PF07433.11 EME71929.1 - 0.093 11.8 0.0 0.47 9.5 0.0 2.0 3 0 0 3 3 3 0 Protein of unknown function (DUF1513) Radical_SAM PF04055.21 EME71930.1 - 3.1e-22 79.7 0.0 4.4e-22 79.2 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 EME71930.1 - 2.9e-09 37.3 0.0 4.8e-09 36.6 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 EME71930.1 - 9.1e-06 25.8 0.0 1.6e-05 25.0 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.6 EME71930.1 - 0.0055 17.2 0.0 0.017 15.6 0.0 1.8 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain AsnC_trans_reg2 PF17805.1 EME71931.1 - 5.9e-22 77.6 0.0 1.2e-21 76.7 0.0 1.5 1 0 0 1 1 1 1 AsnC-like ligand binding domain HTH_AsnC-type PF13404.6 EME71931.1 - 4.5e-08 32.8 1.8 5.9e-08 32.4 0.0 2.1 3 0 0 3 3 3 1 AsnC-type helix-turn-helix domain Sigma70_r4 PF04545.16 EME71931.1 - 0.033 13.7 0.0 0.079 12.5 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_42 PF06224.12 EME71931.1 - 0.045 13.3 0.0 0.047 13.2 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain AsnC_trans_reg2 PF17805.1 EME71932.1 - 8.6e-22 77.1 0.0 1.7e-21 76.2 0.1 1.4 2 0 0 2 2 2 1 AsnC-like ligand binding domain HTH_AsnC-type PF13404.6 EME71932.1 - 4.9e-09 35.9 0.0 1e-08 34.8 0.0 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 EME71932.1 - 7.2e-06 25.5 0.3 4.3e-05 23.0 0.3 2.1 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding NapD PF03927.13 EME71932.1 - 0.012 15.7 0.1 0.04 14.0 0.1 1.8 2 0 0 2 2 2 0 NapD protein HTH_20 PF12840.7 EME71932.1 - 0.015 15.3 0.0 0.035 14.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.7 EME71932.1 - 0.041 13.8 0.0 0.28 11.1 0.0 2.0 2 0 0 2 2 2 0 MarR family HTH_Crp_2 PF13545.6 EME71932.1 - 0.14 12.1 0.0 0.72 9.9 0.0 2.0 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain AsnC_trans_reg2 PF17805.1 EME71933.1 - 3.1e-25 88.2 0.0 1.1e-24 86.3 0.0 1.8 2 0 0 2 2 2 1 AsnC-like ligand binding domain HTH_AsnC-type PF13404.6 EME71933.1 - 0.00013 21.8 0.2 0.0004 20.1 0.1 1.9 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain AsnC_trans_reg2 PF17805.1 EME71934.1 - 6.5e-22 77.5 0.0 1.1e-21 76.8 0.0 1.3 1 0 0 1 1 1 1 AsnC-like ligand binding domain HTH_AsnC-type PF13404.6 EME71934.1 - 2.5e-11 43.2 0.2 5.1e-11 42.2 0.2 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain Peptidase_S8_N PF16361.5 EME71934.1 - 0.0089 16.5 0.0 0.013 16.0 0.0 1.3 1 0 0 1 1 1 1 N-terminal of Subtilase family HTH_24 PF13412.6 EME71934.1 - 0.2 11.3 1.2 1.2 8.7 0.4 2.3 2 1 0 2 2 2 0 Winged helix-turn-helix DNA-binding Cytochrom_D1 PF02239.16 EME71935.1 - 3.2e-104 348.4 0.0 3.6e-104 348.2 0.0 1.0 1 0 0 1 1 1 1 Cytochrome D1 heme domain Lactonase PF10282.9 EME71935.1 - 5.4e-05 22.6 0.0 0.0035 16.7 0.0 2.7 2 1 0 3 3 3 1 Lactonase, 7-bladed beta-propeller SBP56 PF05694.11 EME71935.1 - 0.18 10.6 0.0 0.3 9.8 0.0 1.3 1 0 0 1 1 1 0 56kDa selenium binding protein (SBP56) Cytochrome_CBB3 PF13442.6 EME71936.1 - 3e-12 46.7 0.0 3.8e-12 46.3 0.0 1.2 1 0 0 1 1 1 1 Cytochrome C oxidase, cbb3-type, subunit III Cytochrom_C PF00034.21 EME71936.1 - 6.4e-06 27.2 0.5 0.00083 20.5 0.5 2.1 1 1 0 1 1 1 1 Cytochrome c TP_methylase PF00590.20 EME71937.1 - 6.9e-47 160.1 2.3 8.1e-47 159.9 2.3 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Copper-bind PF00127.20 EME71938.1 - 2.9e-11 43.7 0.0 1.8e-10 41.2 0.0 1.9 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.6 EME71938.1 - 5.2e-11 42.6 0.0 6.2e-11 42.3 0.0 1.0 1 0 0 1 1 1 1 Cupredoxin-like domain EB_dh PF09459.10 EME71939.1 - 7.6e-49 166.9 0.1 6.1e-47 160.7 0.1 2.1 1 1 0 1 1 1 1 Ethylbenzene dehydrogenase Cytochrom_NNT PF03264.14 EME71940.1 - 3.9e-71 238.3 10.7 4e-70 235.0 7.6 2.5 2 0 0 2 2 2 1 NapC/NirT cytochrome c family, N-terminal region EB_dh PF09459.10 EME71940.1 - 6.8e-51 173.6 5.8 5e-32 111.8 0.0 3.1 2 1 1 3 3 3 2 Ethylbenzene dehydrogenase Cytochrome_C7 PF14522.6 EME71940.1 - 4.4e-07 29.8 21.9 0.039 13.9 10.8 4.6 4 1 0 4 4 4 3 Cytochrome c7 and related cytochrome c Cytochrom_c3_2 PF14537.6 EME71940.1 - 0.00025 21.4 24.2 0.13 12.7 0.8 4.3 4 1 0 4 4 4 2 Cytochrome c3 Neuropep_like PF15161.6 EME71940.1 - 0.023 14.3 0.8 0.023 14.3 0.8 3.7 4 1 1 5 5 5 0 Neuropeptide-like Paired_CXXCH_1 PF09699.10 EME71940.1 - 0.033 13.9 25.1 1.5 8.7 2.1 5.1 4 2 2 6 6 6 0 Doubled CXXCH motif (Paired_CXXCH_1) GF_recep_IV PF14843.6 EME71940.1 - 2.5 7.9 14.0 0.41 10.4 3.0 3.2 3 0 0 3 3 3 0 Growth factor receptor domain IV PSCyt1 PF07635.11 EME71940.1 - 4.7 7.9 0.0 4.7 7.9 0.0 4.7 5 0 0 5 5 5 0 Planctomycete cytochrome C HTH_Crp_2 PF13545.6 EME71941.1 - 5.3e-17 61.5 0.3 1.8e-16 59.8 0.0 1.9 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain cNMP_binding PF00027.29 EME71941.1 - 5.7e-10 39.1 0.0 1e-09 38.3 0.0 1.5 1 0 0 1 1 1 1 Cyclic nucleotide-binding domain MarR_2 PF12802.7 EME71941.1 - 0.00028 20.7 0.5 0.0011 18.8 0.1 2.2 3 0 0 3 3 3 1 MarR family HTH_5 PF01022.20 EME71941.1 - 0.00034 20.4 0.0 0.0025 17.6 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR PF01047.22 EME71941.1 - 0.0013 18.7 0.0 0.0072 16.2 0.0 2.2 3 0 0 3 3 3 1 MarR family HTH_24 PF13412.6 EME71941.1 - 0.0057 16.2 0.0 0.011 15.2 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.20 EME71941.1 - 0.0092 16.3 0.1 0.11 12.9 0.0 2.2 1 1 1 2 2 2 1 Transcriptional regulator HTH_36 PF13730.6 EME71941.1 - 0.018 15.0 0.0 0.034 14.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_AraC PF00165.23 EME71941.1 - 0.042 14.0 0.0 0.18 11.9 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix proteins, AraC family GntR PF00392.21 EME71941.1 - 0.083 12.6 0.0 0.16 11.6 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family cNMP_binding PF00027.29 EME71942.1 - 2.2e-17 62.9 0.0 4.7e-17 61.8 0.0 1.5 1 0 0 1 1 1 1 Cyclic nucleotide-binding domain HTH_Crp_2 PF13545.6 EME71942.1 - 1.8e-14 53.5 0.5 4.3e-14 52.2 0.5 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Crp PF00325.20 EME71942.1 - 0.11 12.1 0.8 0.27 10.9 0.8 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, crp family Cytochrom_D1 PF02239.16 EME71943.1 - 6.5e-153 508.6 2.2 7.7e-153 508.4 2.2 1.0 1 0 0 1 1 1 1 Cytochrome D1 heme domain Cytochrome_CBB3 PF13442.6 EME71943.1 - 4.6e-11 42.9 0.1 1.2e-10 41.6 0.1 1.8 1 0 0 1 1 1 1 Cytochrome C oxidase, cbb3-type, subunit III Cytochrom_C PF00034.21 EME71943.1 - 0.00018 22.6 1.0 0.0043 18.2 1.0 2.6 1 1 0 1 1 1 1 Cytochrome c Cytochrom_C550 PF14495.6 EME71943.1 - 0.0022 17.7 0.2 0.78 9.5 0.0 2.5 1 1 1 2 2 2 2 Cytochrome c-550 domain PQQ_3 PF13570.6 EME71943.1 - 0.028 14.9 0.0 0.1 13.1 0.0 2.0 1 0 0 1 1 1 0 PQQ-like domain Phage_ABA_S PF18066.1 EME71943.1 - 0.092 13.4 0.2 1.1 10.0 0.0 2.7 3 0 0 3 3 3 0 Phage ABA sandwich domain DSBA PF01323.20 EME71944.1 - 1.2e-23 83.9 2.8 4.2e-23 82.1 0.6 2.4 2 1 0 2 2 2 1 DSBA-like thioredoxin domain Thioredoxin_4 PF13462.6 EME71944.1 - 1.6e-21 77.2 0.0 9e-21 74.7 0.0 1.8 1 1 1 2 2 2 1 Thioredoxin ScsC_N PF18312.1 EME71944.1 - 1e-14 54.0 0.8 2.4e-14 52.8 0.8 1.7 1 0 0 1 1 1 1 Copper resistance protein ScsC N-terminal domain Thioredoxin_2 PF13098.6 EME71944.1 - 1.9e-08 34.7 0.0 5.9e-08 33.1 0.0 1.8 2 0 0 2 2 2 1 Thioredoxin-like domain Thioredoxin_5 PF13743.6 EME71944.1 - 1.3e-05 25.0 0.0 2.1e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin MHB PF16525.5 EME71944.1 - 0.035 14.3 0.0 0.083 13.2 0.0 1.5 1 0 0 1 1 1 0 Haemophore, haem-binding DUF3860 PF12976.7 EME71944.1 - 0.077 13.0 0.0 0.14 12.2 0.0 1.4 1 0 0 1 1 1 0 Domain of Unknown Function with PDB structure (DUF3860) Thioredoxin PF00085.20 EME71944.1 - 0.089 12.8 0.0 2.8 8.0 0.0 2.3 2 0 0 2 2 2 0 Thioredoxin Peptidase_M48 PF01435.18 EME71945.1 - 1.2e-28 100.2 0.2 2e-28 99.5 0.2 1.3 1 0 0 1 1 1 1 Peptidase family M48 TPR_14 PF13428.6 EME71945.1 - 5.9e-07 29.8 17.9 0.06 14.2 0.1 5.5 3 1 2 5 5 5 4 Tetratricopeptide repeat TPR_19 PF14559.6 EME71945.1 - 2.6e-05 24.7 8.1 0.3 11.6 0.2 4.1 3 1 1 4 4 4 2 Tetratricopeptide repeat TPR_2 PF07719.17 EME71945.1 - 7.2e-05 22.6 3.2 0.53 10.5 0.6 4.5 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_16 PF13432.6 EME71945.1 - 8.3e-05 23.2 2.9 0.0017 19.0 0.2 4.7 3 3 1 4 4 4 2 Tetratricopeptide repeat TPR_11 PF13414.6 EME71945.1 - 0.00017 21.2 0.3 0.002 17.8 0.0 2.9 2 1 0 2 2 2 1 TPR repeat TPR_15 PF13429.6 EME71945.1 - 0.00095 18.5 5.4 0.001 18.4 0.4 3.0 2 1 1 3 3 3 1 Tetratricopeptide repeat TPR_17 PF13431.6 EME71945.1 - 0.0011 19.2 0.0 14 6.3 0.0 4.1 3 0 0 3 3 3 1 Tetratricopeptide repeat ANAPC3 PF12895.7 EME71945.1 - 0.0054 16.9 0.0 0.86 9.9 0.0 2.7 2 1 0 2 2 2 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_20 PF14561.6 EME71945.1 - 0.0087 16.4 4.9 0.43 11.0 0.9 3.9 3 1 1 4 4 4 1 Tetratricopeptide repeat TPR_1 PF00515.28 EME71945.1 - 0.73 9.8 7.3 1.8 8.5 0.0 3.6 4 0 0 4 4 4 0 Tetratricopeptide repeat G_glu_transpept PF01019.21 EME71946.1 - 1.1e-66 225.6 0.3 2e-58 198.4 0.3 3.0 2 1 0 2 2 2 2 Gamma-glutamyltranspeptidase Aminotran_1_2 PF00155.21 EME71947.1 - 1e-57 196.0 0.0 1.2e-57 195.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.7 EME71947.1 - 0.0013 17.6 0.0 0.0023 16.8 0.0 1.6 1 1 0 1 1 1 1 Alanine-glyoxylate amino-transferase DegT_DnrJ_EryC1 PF01041.17 EME71947.1 - 0.014 14.7 0.1 0.019 14.3 0.1 1.2 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family Alliinase_C PF04864.13 EME71947.1 - 0.016 14.1 0.0 0.022 13.6 0.0 1.2 1 0 0 1 1 1 0 Allinase Unstab_antitox PF09720.10 EME71947.1 - 0.9 9.6 2.9 7.1 6.8 0.2 2.6 2 0 0 2 2 2 0 Putative addiction module component FlaE PF07559.14 EME71948.1 - 2.9e-15 56.9 13.5 3.8e-11 43.6 1.6 2.9 2 1 1 3 3 3 2 Flagellar basal body protein FlaE Flg_bbr_C PF06429.13 EME71948.1 - 9.9e-14 51.2 5.8 3.4e-13 49.5 1.3 3.1 3 0 0 3 3 3 1 Flagellar basal body rod FlgEFG protein C-terminal Flg_bb_rod PF00460.20 EME71948.1 - 0.0086 16.0 2.0 0.0086 16.0 2.0 2.1 2 0 0 2 2 2 1 Flagella basal body rod protein DUF1921 PF09081.10 EME71948.1 - 0.1 12.9 0.6 0.43 10.8 0.6 2.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1921) GPI-anchored PF10342.9 EME71948.1 - 0.22 12.3 10.4 0.35 11.7 0.1 4.5 3 1 1 4 4 4 0 Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family Orn_Arg_deC_N PF02784.16 EME71949.1 - 1e-53 182.3 0.0 1.3e-53 181.9 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.22 EME71949.1 - 1.9e-09 37.6 0.0 2e-09 37.6 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Ala_racemase_N PF01168.20 EME71949.1 - 4.8e-05 23.1 0.0 7.6e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 Alanine racemase, N-terminal domain Isochorismatase PF00857.20 EME71950.1 - 1.2e-27 97.2 0.0 1.4e-27 96.9 0.0 1.1 1 0 0 1 1 1 1 Isochorismatase family ATP-synt_F PF01990.17 EME71950.1 - 0.097 13.0 0.0 0.17 12.2 0.0 1.3 1 0 0 1 1 1 0 ATP synthase (F/14-kDa) subunit DEAD PF00270.29 EME71951.1 - 1.1e-51 175.1 0.0 1.8e-51 174.4 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 EME71951.1 - 5.9e-29 100.6 0.1 1.5e-28 99.3 0.1 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 EME71951.1 - 6.3e-06 26.3 0.0 1.1e-05 25.5 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit PRAI PF00697.22 EME71951.1 - 0.009 15.8 0.1 0.015 15.1 0.1 1.2 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AAA_22 PF13401.6 EME71951.1 - 0.31 11.3 1.2 2.4 8.4 1.2 2.2 1 1 0 1 1 1 0 AAA domain CMS1 PF14617.6 EME71951.1 - 1 8.6 3.5 2.1 7.6 0.0 2.6 3 0 0 3 3 3 0 U3-containing 90S pre-ribosomal complex subunit AsnC_trans_reg PF01037.21 EME71952.1 - 8.5e-16 57.7 0.1 9.4e-16 57.6 0.1 1.0 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain Rubrerythrin PF02915.17 EME71953.1 - 8.3e-28 97.5 0.4 2.5e-27 95.9 0.4 1.6 1 1 0 1 1 1 1 Rubrerythrin Ferritin PF00210.24 EME71953.1 - 3.4e-08 33.5 0.2 0.0047 16.9 0.1 2.0 1 1 1 2 2 2 2 Ferritin-like domain Ferritin_2 PF13668.6 EME71953.1 - 0.0042 17.3 0.7 0.057 13.6 0.2 2.0 1 1 1 2 2 2 2 Ferritin-like domain CCG PF02754.16 EME71954.1 - 8.7e-09 35.5 2.8 9.3e-06 25.8 0.0 2.7 3 0 0 3 3 3 2 Cysteine-rich domain Fer4_8 PF13183.6 EME71954.1 - 0.00094 19.6 4.0 0.0036 17.7 4.2 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 EME71954.1 - 0.019 15.5 6.0 0.11 13.0 6.2 2.2 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_10 PF13237.6 EME71954.1 - 0.027 14.6 6.1 0.027 14.6 6.1 2.2 3 1 0 3 3 3 0 4Fe-4S dicluster domain Fer4_9 PF13187.6 EME71954.1 - 0.094 12.9 7.3 1.8 8.8 8.6 2.3 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_7 PF12838.7 EME71954.1 - 0.14 12.8 7.6 0.086 13.5 4.7 2.2 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 EME71954.1 - 5.3 7.3 14.5 5.5 7.2 3.3 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4 PF00037.27 EME71954.1 - 6 6.9 9.8 4.4 7.3 1.5 2.8 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_21 PF14697.6 EME71954.1 - 6.7 6.9 10.7 4.6 7.4 7.8 2.2 2 1 0 2 2 2 0 4Fe-4S dicluster domain zf_PR_Knuckle PF18445.1 EME71954.1 - 9.4 6.1 7.3 5.2 7.0 4.0 2.2 2 0 0 2 2 2 0 PR zinc knuckle motif DUF3501 PF12007.8 EME71955.1 - 2.6e-63 213.4 0.0 2.9e-63 213.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3501) DUF2335 PF10097.9 EME71955.1 - 0.04 13.9 0.1 0.17 11.8 0.0 2.0 2 0 0 2 2 2 0 Predicted membrane protein (DUF2335) DUF5597 PF18120.1 EME71955.1 - 0.046 13.8 0.0 0.082 13.0 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF5597) FBPase_glpX PF03320.13 EME71956.1 - 2.6e-111 371.4 1.2 3.2e-111 371.1 1.2 1.0 1 0 0 1 1 1 1 Bacterial fructose-1,6-bisphosphatase, glpX-encoded Transketolase_N PF00456.21 EME71957.1 - 1.5e-132 441.6 0.5 2.3e-132 441.0 0.2 1.4 1 1 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain Transket_pyr PF02779.24 EME71957.1 - 9.6e-48 162.2 0.6 4.4e-47 160.0 0.0 2.2 2 0 0 2 2 2 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 EME71957.1 - 4.3e-13 49.2 0.0 1e-12 48.0 0.0 1.6 1 0 0 1 1 1 1 Transketolase, C-terminal domain E1_dh PF00676.20 EME71957.1 - 8.8e-08 31.4 0.3 1.7e-07 30.5 0.3 1.4 1 0 0 1 1 1 1 Dehydrogenase E1 component DXP_synthase_N PF13292.6 EME71957.1 - 1.4e-06 27.7 0.0 0.00018 20.8 0.0 2.3 1 1 1 2 2 2 2 1-deoxy-D-xylulose-5-phosphate synthase TPP_enzyme_C PF02775.21 EME71957.1 - 1.7e-06 27.9 2.9 0.00016 21.5 0.7 3.9 3 1 0 3 3 3 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain F_bP_aldolase PF01116.20 EME71958.1 - 3e-93 312.3 0.0 3.8e-93 312.0 0.0 1.1 1 0 0 1 1 1 1 Fructose-bisphosphate aldolase class-II Ribul_P_3_epim PF00834.19 EME71959.1 - 5.5e-85 283.8 0.3 6.2e-85 283.6 0.3 1.0 1 0 0 1 1 1 1 Ribulose-phosphate 3 epimerase family His_biosynth PF00977.21 EME71959.1 - 0.00014 21.4 0.6 0.0024 17.4 0.2 2.2 1 1 1 2 2 2 1 Histidine biosynthesis protein PcrB PF01884.17 EME71959.1 - 0.0014 18.2 1.2 0.15 11.5 0.0 2.1 1 1 1 2 2 2 2 PcrB family TMP-TENI PF02581.17 EME71959.1 - 0.0042 16.4 0.3 0.0042 16.4 0.3 1.6 2 0 0 2 2 2 1 Thiamine monophosphate synthase ADH_zinc_N PF00107.26 EME71959.1 - 0.011 15.7 0.1 0.34 10.9 0.0 2.1 1 1 1 2 2 2 0 Zinc-binding dehydrogenase QRPTase_C PF01729.19 EME71959.1 - 0.038 13.8 0.6 0.19 11.5 0.3 2.2 2 1 0 2 2 2 0 Quinolinate phosphoribosyl transferase, C-terminal domain Glyoxalase PF00903.25 EME71960.1 - 5.8e-09 36.2 0.0 9e-09 35.6 0.0 1.3 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 EME71960.1 - 1.8e-05 25.5 0.6 4e-05 24.3 0.6 1.6 1 1 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_2 PF12681.7 EME71960.1 - 0.018 15.0 0.0 0.028 14.3 0.0 1.3 1 1 0 1 1 1 0 Glyoxalase-like domain Pyridox_ox_2 PF12900.7 EME71961.1 - 2.1e-45 154.2 0.2 2.7e-45 153.8 0.2 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Putative_PNPOx PF01243.20 EME71961.1 - 0.028 14.6 0.0 0.26 11.5 0.0 2.3 2 1 0 2 2 2 0 Pyridoxamine 5'-phosphate oxidase Aminotran_1_2 PF00155.21 EME71962.1 - 3.6e-22 79.0 0.0 5.1e-22 78.5 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II GntR PF00392.21 EME71962.1 - 8.4e-14 51.0 1.9 1.3e-13 50.4 0.2 2.2 3 0 0 3 3 3 1 Bacterial regulatory proteins, gntR family HTH_50 PF18024.1 EME71962.1 - 0.056 13.1 0.1 0.14 11.8 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_36 PF13730.6 EME71962.1 - 0.062 13.3 0.0 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain SMN PF06003.12 EME71962.1 - 4.8 6.4 7.0 27 3.9 4.9 2.1 2 0 0 2 2 2 0 Survival motor neuron protein (SMN) PBP_like_2 PF12849.7 EME71963.1 - 4.6e-46 157.7 0.6 5.4e-46 157.5 0.6 1.0 1 0 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.7 EME71963.1 - 3.7e-08 32.7 0.0 6.3e-08 32.0 0.0 1.4 1 0 0 1 1 1 1 PBP superfamily domain DUF3708 PF12501.8 EME71964.1 - 3e-28 98.7 28.2 7.3e-26 90.9 4.2 4.3 4 1 1 5 5 5 3 Phosphate ATP-binding cassette transporter BPD_transp_1 PF00528.22 EME71964.1 - 3.3e-17 62.8 14.7 3.3e-17 62.8 14.7 2.8 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component DUF3861 PF12977.7 EME71964.1 - 0.23 11.6 0.0 38 4.5 0.0 2.4 2 0 0 2 2 2 0 Domain of Unknown Function with PDB structure (DUF3861) DUF3333 PF11812.8 EME71965.1 - 9.9e-48 162.2 0.1 2e-47 161.2 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF3333) BPD_transp_1 PF00528.22 EME71965.1 - 2.5e-20 73.0 11.8 2.5e-20 73.0 11.8 2.5 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 EME71966.1 - 2.7e-32 112.2 0.0 3.7e-32 111.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 EME71966.1 - 4.4e-12 46.4 0.0 2.2e-05 24.4 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 EME71966.1 - 3.4e-08 33.2 0.0 1.5e-07 31.1 0.0 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 EME71966.1 - 0.00013 21.8 0.0 0.00038 20.3 0.0 1.6 1 1 1 2 2 2 1 AAA ATPase domain RsgA_GTPase PF03193.16 EME71966.1 - 0.00023 21.1 0.0 0.00061 19.7 0.0 1.6 2 0 0 2 2 2 1 RsgA GTPase AAA_25 PF13481.6 EME71966.1 - 0.00048 19.7 0.1 0.012 15.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 EME71966.1 - 0.00061 19.5 0.0 0.0013 18.5 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 EME71966.1 - 0.0015 19.1 0.0 0.0025 18.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 EME71966.1 - 0.0021 18.5 0.1 0.0052 17.2 0.1 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 EME71966.1 - 0.0023 18.2 0.0 0.0051 17.1 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 EME71966.1 - 0.0086 15.8 0.1 0.43 10.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain Rad17 PF03215.15 EME71966.1 - 0.023 14.6 0.0 0.041 13.8 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_24 PF13479.6 EME71966.1 - 0.036 13.8 0.0 0.11 12.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 EME71966.1 - 0.059 13.5 0.0 0.11 12.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 EME71966.1 - 0.067 13.6 0.1 1.6 9.2 0.0 2.3 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 EME71966.1 - 0.094 13.3 0.1 0.38 11.3 0.0 1.9 2 1 0 2 2 2 0 AAA domain NACHT PF05729.12 EME71966.1 - 0.18 11.7 0.0 0.38 10.6 0.0 1.5 1 0 0 1 1 1 0 NACHT domain PhoU PF01895.19 EME71967.1 - 1.6e-41 140.6 4.4 1.3e-22 80.0 1.5 2.1 2 0 0 2 2 2 2 PhoU domain Phage-MuB_C PF09077.11 EME71967.1 - 0.12 12.3 0.6 0.8 9.6 0.0 2.4 3 0 0 3 3 3 0 Mu B transposition protein, C terminal SeqA_N PF17206.3 EME71967.1 - 0.14 11.5 0.0 23 4.4 0.0 2.6 2 0 0 2 2 2 0 SeqA protein N-terminal domain Response_reg PF00072.24 EME71968.1 - 4.5e-32 110.5 0.0 6.4e-32 110.0 0.0 1.2 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 EME71968.1 - 7.1e-27 93.3 0.0 2.8e-26 91.4 0.0 2.0 2 0 0 2 2 2 1 Transcriptional regulatory protein, C terminal DUF3463 PF11946.8 EME71969.1 - 5.4e-61 204.3 0.3 9e-61 203.6 0.3 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF3463) Radical_SAM PF04055.21 EME71969.1 - 4.9e-14 53.0 0.0 8.3e-14 52.3 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 EME71969.1 - 0.00035 20.9 0.0 0.0064 16.8 0.0 2.5 2 1 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 EME71969.1 - 0.0014 18.7 0.3 0.0045 17.1 0.3 1.8 1 1 0 1 1 1 1 4Fe-4S single cluster domain HMGL-like PF00682.19 EME71969.1 - 0.076 12.6 0.0 0.11 12.1 0.0 1.2 1 0 0 1 1 1 0 HMGL-like PNP_UDP_1 PF01048.20 EME71970.1 - 9.5e-20 70.9 1.2 2.7e-17 62.8 1.2 2.2 1 1 0 1 1 1 1 Phosphorylase superfamily SQHop_cyclase_C PF13243.6 EME71971.1 - 6.1e-149 495.4 4.5 2.9e-144 480.0 5.3 3.3 3 1 1 4 4 4 2 Squalene-hopene cyclase C-terminal domain SQHop_cyclase_N PF13249.6 EME71971.1 - 7.5e-121 402.7 6.9 2.2e-113 378.2 0.0 4.7 4 2 1 5 5 5 2 Squalene-hopene cyclase N-terminal domain Prenyltrans PF00432.21 EME71971.1 - 1.1e-26 92.2 9.9 3.8e-10 39.3 0.2 6.7 7 0 0 7 7 7 4 Prenyltransferase and squalene oxidase repeat Pec_lyase PF09492.10 EME71971.1 - 7.7e-05 22.1 0.5 0.027 13.8 0.1 4.4 4 1 0 4 4 4 1 Pectic acid lyase TED_complement PF07678.14 EME71971.1 - 0.0064 15.6 0.0 0.33 9.9 0.0 3.6 3 2 1 4 4 4 1 A-macroglobulin TED domain SQS_PSY PF00494.19 EME71972.1 - 6.9e-66 222.4 0.9 8.3e-66 222.2 0.9 1.0 1 0 0 1 1 1 1 Squalene/phytoene synthase Glyco_tranf_2_3 PF13641.6 EME71973.1 - 2.6e-22 79.9 0.2 3.4e-22 79.5 0.2 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.26 EME71973.1 - 1.9e-17 63.6 0.0 2.7e-17 63.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.6 EME71973.1 - 5.8e-14 51.9 0.0 8.7e-14 51.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_4 PF13704.6 EME71973.1 - 0.0012 19.3 0.0 0.0021 18.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.6 EME71973.1 - 0.0091 15.9 8.4 0.017 15.1 7.5 2.0 2 1 0 2 2 2 1 Glycosyl transferase family group 2 Epimerase PF01370.21 EME71974.1 - 1.3e-37 129.5 0.0 1.7e-37 129.2 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 EME71974.1 - 3.6e-25 88.5 0.0 4.8e-25 88.1 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.12 EME71974.1 - 1.7e-21 76.6 0.1 7.2e-14 51.6 0.0 2.1 1 1 1 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.6 EME71974.1 - 4.5e-21 75.6 0.8 5.9e-21 75.2 0.8 1.2 1 0 0 1 1 1 1 NAD(P)H-binding GDP_Man_Dehyd PF16363.5 EME71974.1 - 7.8e-20 71.5 0.0 1.6e-19 70.5 0.0 1.4 2 0 0 2 2 2 1 GDP-mannose 4,6 dehydratase NmrA PF05368.13 EME71974.1 - 6.6e-15 55.3 0.1 1.1e-14 54.6 0.1 1.4 1 1 0 1 1 1 1 NmrA-like family Polysacc_synt_2 PF02719.15 EME71974.1 - 4.6e-08 32.5 0.3 1.3e-07 31.0 0.3 1.7 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 EME71974.1 - 1.5e-06 27.6 0.3 2.2e-06 27.0 0.3 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain KR PF08659.10 EME71974.1 - 0.00045 20.2 1.0 0.04 13.8 1.0 2.3 1 1 0 1 1 1 1 KR domain adh_short PF00106.25 EME71974.1 - 0.0014 18.1 2.1 0.018 14.5 2.1 2.2 1 1 0 1 1 1 1 short chain dehydrogenase DFP PF04127.15 EME71974.1 - 0.0019 18.0 0.4 0.0036 17.1 0.4 1.5 1 0 0 1 1 1 1 DNA / pantothenate metabolism flavoprotein Sel1 PF08238.12 EME71976.1 - 9.7e-56 185.0 34.8 1.7e-08 34.8 0.9 7.7 8 0 0 8 8 8 7 Sel1 repeat TPR_5 PF12688.7 EME71976.1 - 2.1 8.6 9.6 2.3 8.5 0.2 3.9 3 1 1 5 5 5 0 Tetratrico peptide repeat NSF PF02071.20 EME71976.1 - 8.9 7.6 6.1 61 5.1 0.3 4.3 3 0 0 3 3 3 0 Aromatic-di-Alanine (AdAR) repeat ACPS PF01648.20 EME71977.1 - 2.3e-12 47.0 0.0 2.9e-12 46.7 0.0 1.2 1 0 0 1 1 1 1 4'-phosphopantetheinyl transferase superfamily AMP-binding PF00501.28 EME71978.1 - 2.3e-89 299.9 0.0 3.2e-89 299.4 0.0 1.2 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 EME71978.1 - 5.2e-12 46.6 0.1 1.3e-11 45.3 0.1 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Hexapep PF00132.24 EME71978.1 - 3.1e-07 29.8 18.6 0.044 13.5 0.1 6.6 6 1 0 6 6 6 4 Bacterial transferase hexapeptide (six repeats) PP-binding PF00550.25 EME71978.1 - 0.0001 22.6 0.1 0.00024 21.4 0.1 1.7 1 0 0 1 1 1 1 Phosphopantetheine attachment site Hexapep_2 PF14602.6 EME71978.1 - 4.2 7.2 26.8 0.073 12.8 1.9 6.0 7 0 0 7 7 7 0 Hexapeptide repeat of succinyl-transferase RHH_4 PF13467.6 EME71979.1 - 5.9e-27 93.3 0.0 6.5e-27 93.2 0.0 1.0 1 0 0 1 1 1 1 Ribbon-helix-helix domain RHH_1 PF01402.21 EME71979.1 - 0.0068 16.3 0.0 0.031 14.2 0.0 1.9 1 1 1 2 2 2 1 Ribbon-helix-helix protein, copG family DUF2934 PF11154.8 EME71980.1 - 2.3e-15 56.0 2.8 2.3e-15 56.0 2.8 2.1 3 0 0 3 3 3 1 Protein of unknown function (DUF2934) FlaF PF07309.11 EME71980.1 - 9.2e-05 22.4 4.7 0.0011 19.0 4.7 2.1 1 1 0 1 1 1 1 Flagellar protein FlaF EAL PF00563.20 EME71981.1 - 3.9e-71 239.3 0.0 8.1e-71 238.3 0.0 1.6 1 0 0 1 1 1 1 EAL domain GGDEF PF00990.21 EME71981.1 - 9.1e-45 152.3 0.0 1.7e-44 151.4 0.0 1.4 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain PAS PF00989.25 EME71981.1 - 2.6e-16 59.6 0.0 1.4e-15 57.2 0.0 2.3 3 0 0 3 3 3 1 PAS fold PAS_9 PF13426.7 EME71981.1 - 8.6e-16 58.1 0.0 1.7e-15 57.2 0.0 1.5 1 0 0 1 1 1 1 PAS domain HAMP PF00672.25 EME71981.1 - 6.1e-14 52.1 0.6 1.9e-13 50.6 0.6 1.9 1 0 0 1 1 1 1 HAMP domain PAS_4 PF08448.10 EME71981.1 - 1.7e-10 41.1 0.0 7.4e-10 39.1 0.1 2.2 2 0 0 2 2 1 1 PAS fold PAS_8 PF13188.7 EME71981.1 - 3.1e-10 39.8 0.0 9.6e-10 38.3 0.0 1.9 1 0 0 1 1 1 1 PAS domain dCache_1 PF02743.18 EME71981.1 - 6.2e-07 29.5 0.0 7.9e-06 25.8 0.0 2.1 2 0 0 2 2 2 1 Cache domain PAS_7 PF12860.7 EME71981.1 - 6.2e-06 26.4 0.0 2.4e-05 24.5 0.0 2.0 1 0 0 1 1 1 1 PAS fold PAS_3 PF08447.12 EME71981.1 - 0.0023 18.2 0.0 0.005 17.1 0.0 1.5 1 0 0 1 1 1 1 PAS fold MLTR_LBD PF17765.1 EME71981.1 - 0.056 13.6 0.0 0.12 12.5 0.0 1.5 1 0 0 1 1 1 0 MmyB-like transcription regulator ligand binding domain PAS_10 PF13596.6 EME71981.1 - 0.098 13.3 0.0 0.23 12.0 0.0 1.6 1 0 0 1 1 1 0 PAS domain Phage_holin_3_6 PF07332.11 EME71981.1 - 0.57 10.2 7.4 0.99 9.5 1.8 2.6 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III ABC_sub_bind PF04392.12 EME71982.1 - 8.3e-41 140.1 0.0 1e-40 139.9 0.0 1.0 1 0 0 1 1 1 1 ABC transporter substrate binding protein DUF3572 PF12096.8 EME71984.1 - 6e-28 96.9 4.2 6.7e-28 96.7 4.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3572) APH PF01636.23 EME71984.1 - 0.023 14.6 0.5 0.025 14.5 0.5 1.1 1 0 0 1 1 1 0 Phosphotransferase enzyme family THDPS_N_2 PF14805.6 EME71986.1 - 0.11 12.7 0.7 0.26 11.5 0.3 1.8 2 0 0 2 2 2 0 Tetrahydrodipicolinate N-succinyltransferase N-terminal Fusion_F0 PF13044.6 EME71987.1 - 0.14 10.7 0.5 0.17 10.5 0.5 1.0 1 0 0 1 1 1 0 Fusion glycoprotein F0, Isavirus Response_reg PF00072.24 EME71988.1 - 2.3e-22 79.2 0.4 3.8e-22 78.6 0.1 1.5 2 0 0 2 2 2 1 Response regulator receiver domain GerE PF00196.19 EME71988.1 - 3.3e-22 77.8 1.2 5.4e-22 77.1 0.1 2.0 3 0 0 3 3 3 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 EME71988.1 - 1e-06 28.3 1.1 1.8e-06 27.5 0.1 2.0 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 EME71988.1 - 0.00066 19.1 0.3 0.0017 17.8 0.3 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.6 EME71988.1 - 0.0042 16.8 0.1 0.012 15.4 0.1 1.8 1 0 0 1 1 1 1 Homeodomain-like domain HTH_10 PF04967.12 EME71988.1 - 0.011 15.5 0.8 0.21 11.4 0.8 2.5 1 1 0 1 1 1 0 HTH DNA binding domain HTH_40 PF14493.6 EME71988.1 - 0.045 14.2 0.2 0.24 11.9 0.2 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_24 PF13412.6 EME71988.1 - 0.046 13.3 0.2 0.18 11.4 0.1 2.1 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding 3HCDH_RFF PF18321.1 EME71988.1 - 0.067 13.6 0.2 0.27 11.7 0.0 2.0 1 1 1 2 2 2 0 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain HTH_28 PF13518.6 EME71988.1 - 0.12 12.5 0.2 0.44 10.7 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain MMR_HSR1 PF01926.23 EME71989.1 - 1.4e-50 170.1 0.1 5.2e-27 94.2 0.0 2.2 2 0 0 2 2 2 2 50S ribosome-binding GTPase KH_dom-like PF14714.6 EME71989.1 - 5.9e-34 116.2 0.1 1e-33 115.5 0.1 1.4 1 0 0 1 1 1 1 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal FeoB_N PF02421.18 EME71989.1 - 1.9e-28 99.0 0.0 3.1e-13 49.5 0.2 2.3 2 0 0 2 2 2 2 Ferrous iron transport protein B GTP_EFTU PF00009.27 EME71989.1 - 4.6e-22 78.5 0.3 3.3e-10 39.8 0.3 5.6 2 2 0 3 3 3 3 Elongation factor Tu GTP binding domain AIG1 PF04548.16 EME71989.1 - 5.1e-14 52.1 0.0 5.7e-08 32.4 0.0 2.2 2 0 0 2 2 2 2 AIG1 family Dynamin_N PF00350.23 EME71989.1 - 7.2e-11 42.4 0.9 0.027 14.5 0.0 4.1 2 2 2 4 4 4 3 Dynamin family RsgA_GTPase PF03193.16 EME71989.1 - 1.8e-09 37.7 0.0 0.14 12.1 0.0 3.7 4 0 0 4 4 3 3 RsgA GTPase Ras PF00071.22 EME71989.1 - 1.6e-06 27.8 0.0 0.0064 16.1 0.0 3.0 2 2 0 2 2 2 2 Ras family Roc PF08477.13 EME71989.1 - 3.1e-06 27.4 0.0 0.0086 16.3 0.0 3.1 2 2 0 2 2 2 2 Ras of Complex, Roc, domain of DAPkinase MeaB PF03308.16 EME71989.1 - 3.5e-06 26.2 3.8 0.0082 15.2 0.6 4.0 4 0 0 4 4 4 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_22 PF13401.6 EME71989.1 - 9.7e-05 22.7 0.1 0.13 12.6 0.0 2.8 2 2 0 2 2 2 2 AAA domain AAA_24 PF13479.6 EME71989.1 - 0.00014 21.6 0.0 0.48 10.1 0.0 2.6 2 0 0 2 2 2 2 AAA domain ABC_tran PF00005.27 EME71989.1 - 0.00033 21.2 0.2 0.99 9.9 0.0 2.6 2 1 0 2 2 2 2 ABC transporter Septin PF00735.18 EME71989.1 - 0.00064 19.1 0.1 0.2 10.9 0.1 2.8 2 1 0 2 2 2 1 Septin AAA_18 PF13238.6 EME71989.1 - 0.00092 19.8 0.1 2.2 8.8 0.1 2.8 2 1 0 2 2 2 2 AAA domain SRPRB PF09439.10 EME71989.1 - 0.0011 18.4 0.0 0.85 9.0 0.0 2.4 2 1 0 2 2 2 2 Signal recognition particle receptor beta subunit TniB PF05621.11 EME71989.1 - 0.0024 17.3 0.0 0.7 9.3 0.0 2.7 2 0 0 2 2 2 1 Bacterial TniB protein NB-ARC PF00931.22 EME71989.1 - 0.005 16.0 0.0 2.4 7.3 0.0 2.3 2 0 0 2 2 2 2 NB-ARC domain PduV-EutP PF10662.9 EME71989.1 - 0.011 15.5 0.0 27 4.5 0.0 3.8 4 0 0 4 4 4 0 Ethanolamine utilisation - propanediol utilisation RNA_helicase PF00910.22 EME71989.1 - 0.018 15.4 0.0 7.9 6.9 0.0 2.5 2 0 0 2 2 2 0 RNA helicase cobW PF02492.19 EME71989.1 - 0.018 14.6 2.6 0.11 12.0 0.3 2.6 3 0 0 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain AAA_29 PF13555.6 EME71989.1 - 0.028 14.1 0.0 12 5.7 0.0 2.7 2 0 0 2 2 2 0 P-loop containing region of AAA domain NTPase_1 PF03266.15 EME71989.1 - 0.036 14.0 0.1 2.7 7.9 0.0 2.4 2 0 0 2 2 2 0 NTPase PQQ_2 PF13360.6 EME71990.1 - 6.9e-67 225.5 9.2 5.8e-61 206.1 6.3 2.8 2 1 1 3 3 3 2 PQQ-like domain PQQ_3 PF13570.6 EME71990.1 - 8.1e-37 124.8 18.8 8.1e-06 26.2 0.1 8.4 8 0 0 8 8 8 8 PQQ-like domain PQQ PF01011.21 EME71990.1 - 1.9e-26 90.7 3.0 0.00054 19.7 0.0 7.6 7 1 0 7 7 7 6 PQQ enzyme repeat TPR_21 PF09976.9 EME71991.1 - 4.8e-18 65.6 8.6 8.9e-18 64.7 8.6 1.5 1 1 0 1 1 1 1 Tetratricopeptide repeat-like domain TPR_19 PF14559.6 EME71991.1 - 0.0014 19.1 15.4 0.011 16.2 1.5 3.4 3 1 1 4 4 4 2 Tetratricopeptide repeat TPR_16 PF13432.6 EME71991.1 - 0.0096 16.6 21.7 0.018 15.7 4.2 3.4 3 2 0 3 3 3 2 Tetratricopeptide repeat ANAPC3 PF12895.7 EME71991.1 - 0.013 15.7 0.3 1.6 9.0 0.1 2.7 1 1 1 2 2 2 0 Anaphase-promoting complex, cyclosome, subunit 3 Phage_terminase PF10668.9 EME71991.1 - 0.083 12.9 0.2 0.17 11.9 0.2 1.5 1 0 0 1 1 1 0 Phage terminase small subunit TPR_6 PF13174.6 EME71991.1 - 6.8 7.6 8.7 28 5.6 0.7 3.7 3 0 0 3 3 3 0 Tetratricopeptide repeat AhpC-TSA PF00578.21 EME71992.1 - 4.4e-21 75.1 0.0 5.9e-21 74.7 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 EME71992.1 - 7.5e-18 64.7 0.0 1e-17 64.3 0.0 1.1 1 0 0 1 1 1 1 Redoxin Amidohydro_2 PF04909.14 EME71992.1 - 0.073 12.8 0.2 0.077 12.8 0.2 1.1 1 0 0 1 1 1 0 Amidohydrolase DUF2794 PF10984.8 EME71994.1 - 1.4e-24 86.0 0.0 1.6e-24 85.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2794) HATPase_c PF02518.26 EME71996.1 - 6.6e-19 68.5 0.0 1.2e-18 67.6 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 EME71996.1 - 1.7e-07 31.1 1.2 2.4e-06 27.5 0.0 2.4 1 1 1 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.6 EME71996.1 - 0.00039 20.3 0.0 0.0011 18.9 0.0 1.7 1 1 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.6 EME71996.1 - 0.015 15.1 0.0 0.028 14.3 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 EME71996.1 - 0.026 14.5 0.3 0.075 13.0 0.0 1.9 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain DUF1043 PF06295.12 EME71996.1 - 0.091 12.8 0.0 0.15 12.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1043) Response_reg PF00072.24 EME71997.1 - 4.9e-28 97.5 0.1 9.2e-28 96.7 0.1 1.5 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 EME71997.1 - 3.4e-24 84.7 0.3 1.7e-22 79.3 0.1 2.7 3 0 0 3 3 3 1 Transcriptional regulatory protein, C terminal MarR_2 PF12802.7 EME71997.1 - 0.0013 18.6 0.4 0.004 17.0 0.4 1.9 1 0 0 1 1 1 1 MarR family DUF983 PF06170.12 EME71998.1 - 2.5e-27 95.1 0.6 2.5e-27 95.1 0.6 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF983) zf-ribbon_3 PF13248.6 EME71998.1 - 0.019 14.4 2.7 0.4 10.2 0.2 2.5 2 0 0 2 2 2 0 zinc-ribbon domain zinc-ribbons_6 PF07191.12 EME71998.1 - 0.085 12.9 0.0 0.15 12.1 0.0 1.3 1 0 0 1 1 1 0 zinc-ribbons zinc_ribbon_2 PF13240.6 EME71998.1 - 0.11 12.3 4.3 1.4 8.7 0.4 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 EME71998.1 - 0.15 12.1 7.8 2.4 8.2 2.3 2.4 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Mu-like_Com PF10122.9 EME71998.1 - 1.6 8.2 5.4 5 6.7 0.2 2.3 1 1 1 2 2 2 0 Mu-like prophage protein Com DUF35_N PF12172.8 EME71998.1 - 2.7 8.0 10.3 6.5 6.7 1.4 3.1 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) TfoX_N PF04993.13 EME71999.1 - 1.9e-29 101.7 0.0 2.2e-29 101.5 0.0 1.1 1 0 0 1 1 1 1 TfoX N-terminal domain Response_reg PF00072.24 EME72000.1 - 2.4e-26 92.1 0.1 4.6e-26 91.2 0.1 1.5 1 0 0 1 1 1 1 Response regulator receiver domain HD_5 PF13487.6 EME72000.1 - 9e-19 67.5 0.0 1.2e-17 63.9 0.1 2.4 2 0 0 2 2 2 1 HD domain HD PF01966.22 EME72000.1 - 3.3e-16 59.6 0.1 9.4e-16 58.1 0.0 1.8 2 0 0 2 2 2 1 HD domain Response_reg PF00072.24 EME72001.1 - 7.6e-18 64.7 0.0 8.8e-18 64.5 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain Glycos_transf_1 PF00534.20 EME72001.1 - 0.14 11.7 0.1 0.21 11.1 0.1 1.2 1 0 0 1 1 1 0 Glycosyl transferases group 1 Response_reg PF00072.24 EME72002.1 - 7.2e-47 158.2 4.2 5.6e-27 94.1 0.6 2.6 2 0 0 2 2 2 2 Response regulator receiver domain HATPase_c PF02518.26 EME72002.1 - 5.3e-30 104.2 0.1 9.9e-30 103.3 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 EME72002.1 - 2.1e-26 92.3 3.0 2.6e-11 43.7 0.0 4.5 4 0 0 4 4 4 2 PAS fold PAS PF00989.25 EME72002.1 - 7.9e-22 77.4 0.0 8e-11 41.9 0.0 3.7 3 0 0 3 3 3 3 PAS fold HisKA PF00512.25 EME72002.1 - 2.3e-21 75.6 0.0 2.3e-21 75.6 0.0 3.1 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.7 EME72002.1 - 3.5e-21 75.4 0.0 7.4e-12 45.4 0.0 3.7 3 0 0 3 3 3 2 PAS domain 4HB_MCP_1 PF12729.7 EME72002.1 - 7.7e-20 71.2 0.0 2.3e-19 69.7 0.0 1.8 1 0 0 1 1 1 1 Four helix bundle sensory module for signal transduction GAF_2 PF13185.6 EME72002.1 - 6.5e-16 58.9 1.2 3.9e-14 53.1 0.1 3.6 3 0 0 3 3 3 1 GAF domain PAS_3 PF08447.12 EME72002.1 - 6.3e-13 48.8 0.2 1.6e-05 25.1 0.2 4.1 3 1 0 3 3 3 3 PAS fold PAS_8 PF13188.7 EME72002.1 - 9.4e-10 38.3 0.0 0.0019 18.1 0.0 3.5 3 0 0 3 3 3 2 PAS domain PAS_7 PF12860.7 EME72002.1 - 2.5e-08 34.1 0.0 0.0013 18.9 0.0 3.7 3 0 0 3 3 3 2 PAS fold HAMP PF00672.25 EME72002.1 - 1.1e-07 32.1 0.4 6.2e-07 29.7 0.4 2.4 1 0 0 1 1 1 1 HAMP domain Hpt PF01627.23 EME72002.1 - 1.2e-07 31.9 2.6 1.2e-07 31.9 2.6 3.3 4 0 0 4 4 2 1 Hpt domain GAF PF01590.26 EME72002.1 - 4.8e-07 30.5 0.0 2.9e-05 24.7 0.0 2.8 2 0 0 2 2 2 1 GAF domain GAF_3 PF13492.6 EME72002.1 - 1.3e-06 28.8 0.0 5.5e-06 26.7 0.0 2.2 2 0 0 2 2 2 1 GAF domain PAS_10 PF13596.6 EME72002.1 - 0.00017 22.1 0.0 0.0095 16.5 0.0 2.7 2 0 0 2 2 2 1 PAS domain TarH PF02203.15 EME72002.1 - 0.00056 19.9 5.6 0.00056 19.9 5.6 2.4 2 0 0 2 2 1 1 Tar ligand binding domain homologue HNOBA PF07701.14 EME72002.1 - 0.015 14.7 1.4 0.031 13.7 1.4 1.5 1 0 0 1 1 1 0 Heme NO binding associated dCache_1 PF02743.18 EME72003.1 - 3.6e-14 53.2 0.0 5.3e-14 52.6 0.0 1.2 1 0 0 1 1 1 1 Cache domain GAF_2 PF13185.6 EME72003.1 - 6.8e-10 39.4 3.5 8.7e-10 39.0 1.8 2.1 2 0 0 2 2 2 1 GAF domain Na_H_antiport_2 PF13726.6 EME72003.1 - 1.3 9.2 4.7 0.63 10.2 1.2 2.3 2 0 0 2 2 2 0 Na+-H+ antiporter family SSF PF00474.17 EME72004.1 - 4.4e-53 180.6 30.1 2.4e-32 112.3 11.9 3.2 3 0 0 3 3 3 3 Sodium:solute symporter family DUF4407 PF14362.6 EME72004.1 - 0.00014 21.3 0.7 0.00014 21.3 0.7 2.6 2 0 0 2 2 2 1 Domain of unknown function (DUF4407) Prion_bPrPp PF11587.8 EME72004.1 - 2.5 8.0 4.3 32 4.5 0.3 3.0 2 0 0 2 2 2 0 Major prion protein bPrPp - N terminal CoA_binding_3 PF13727.6 EME72004.1 - 9.8 6.2 13.2 1.2 9.1 0.1 4.1 4 0 0 4 4 4 0 CoA-binding domain DUF4212 PF13937.6 EME72005.1 - 5.1e-27 94.1 10.3 5.7e-27 93.9 10.3 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4212) DUF420 PF04238.12 EME72005.1 - 0.013 15.8 1.1 0.049 13.9 1.0 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF420) Synaptobrevin PF00957.21 EME72005.1 - 0.063 13.1 1.9 0.099 12.4 0.1 1.9 2 0 0 2 2 2 0 Synaptobrevin GWT1 PF06423.12 EME72005.1 - 0.063 13.4 0.5 0.067 13.3 0.5 1.1 1 0 0 1 1 1 0 GWT1 NDUF_B6 PF09782.9 EME72005.1 - 0.088 12.9 0.4 0.088 12.9 0.4 1.6 2 0 0 2 2 2 0 NADH:ubiquinone oxidoreductase, NDUFB6/B17 subunit DUF997 PF06196.12 EME72005.1 - 6.4 6.9 13.5 8.4 6.5 13.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF997) TPR_2 PF07719.17 EME72006.1 - 4.6e-25 85.7 5.3 3.5e-06 26.7 0.1 5.1 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_1 PF00515.28 EME72006.1 - 2.3e-23 81.0 0.6 4.1e-05 23.2 0.0 5.2 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_8 PF13181.6 EME72006.1 - 4.6e-21 73.2 0.2 8.8e-05 22.4 0.0 5.0 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_11 PF13414.6 EME72006.1 - 1.5e-20 72.6 1.6 1.4e-07 31.1 0.1 3.2 1 1 2 3 3 3 3 TPR repeat TPR_19 PF14559.6 EME72006.1 - 1.3e-19 70.5 7.4 1.6e-09 38.1 0.8 3.7 2 1 2 4 4 4 3 Tetratricopeptide repeat TPR_14 PF13428.6 EME72006.1 - 7e-17 60.7 20.4 0.00012 22.6 0.7 5.1 2 1 3 5 5 5 4 Tetratricopeptide repeat TPR_16 PF13432.6 EME72006.1 - 4e-14 53.0 20.5 9.3e-09 35.8 9.1 3.2 2 1 1 4 4 4 3 Tetratricopeptide repeat TPR_17 PF13431.6 EME72006.1 - 8.1e-14 50.9 0.4 0.00016 21.8 0.0 3.8 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_7 PF13176.6 EME72006.1 - 6.9e-12 44.5 4.8 0.065 13.3 0.1 5.0 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_12 PF13424.6 EME72006.1 - 1.4e-11 44.5 12.6 0.00025 21.3 1.3 4.2 2 1 2 4 4 4 3 Tetratricopeptide repeat ANAPC3 PF12895.7 EME72006.1 - 1.5e-09 37.9 2.1 8.8e-06 25.9 0.1 2.4 1 1 2 3 3 3 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_6 PF13174.6 EME72006.1 - 2.4e-09 37.2 8.8 0.098 13.3 0.1 4.8 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_9 PF13371.6 EME72006.1 - 8.7e-09 35.4 12.9 0.00013 22.1 4.0 3.5 1 1 3 4 4 4 4 Tetratricopeptide repeat TPR_4 PF07721.14 EME72006.1 - 1e-08 34.9 23.8 0.031 14.9 0.5 4.8 5 0 0 5 5 4 3 Tetratricopeptide repeat TPR_15 PF13429.6 EME72006.1 - 9.2e-07 28.3 7.6 3.2e-05 23.3 7.4 2.0 1 1 1 2 2 2 2 Tetratricopeptide repeat BTAD PF03704.17 EME72006.1 - 2e-05 25.1 6.4 0.0038 17.7 0.3 2.3 1 1 1 2 2 2 2 Bacterial transcriptional activator domain TPR_10 PF13374.6 EME72006.1 - 0.00011 21.9 14.0 0.8 9.7 0.3 5.2 5 1 0 5 5 5 2 Tetratricopeptide repeat DUF5588 PF17826.1 EME72006.1 - 0.00034 19.6 0.0 0.00043 19.3 0.0 1.3 1 0 0 1 1 1 1 Family of unknown function (DUF5588) Fis1_TPR_C PF14853.6 EME72006.1 - 0.0071 16.4 0.0 0.29 11.3 0.0 2.5 2 0 0 2 2 2 1 Fis1 C-terminal tetratricopeptide repeat PPR PF01535.20 EME72006.1 - 0.083 13.2 0.0 40 4.8 0.0 3.3 3 0 0 3 3 3 0 PPR repeat LemA PF04011.12 EME72006.1 - 0.089 12.6 0.0 0.16 11.8 0.0 1.4 1 0 0 1 1 1 0 LemA family PknG_TPR PF16918.5 EME72006.1 - 0.2 10.3 4.5 0.48 9.1 4.7 1.5 1 1 0 1 1 1 0 Protein kinase G tetratricopeptide repeat ChAPs PF09295.10 EME72006.1 - 0.23 10.4 0.0 2.1 7.3 0.0 1.9 1 1 1 2 2 2 0 ChAPs (Chs5p-Arf1p-binding proteins) TPR_20 PF14561.6 EME72006.1 - 0.62 10.4 6.3 1.7 9.0 0.4 3.2 1 1 2 3 3 3 0 Tetratricopeptide repeat YGGT PF02325.17 EME72007.1 - 0.00057 20.3 4.4 0.001 19.5 4.4 1.5 1 1 0 1 1 1 1 YGGT family DUF294_C PF10335.9 EME72008.1 - 4.5e-37 127.0 0.8 9.9e-37 125.9 0.8 1.6 1 0 0 1 1 1 1 Putative nucleotidyltransferase substrate binding domain DUF294 PF03445.13 EME72008.1 - 3.4e-35 120.8 0.1 5.8e-35 120.1 0.1 1.4 1 0 0 1 1 1 1 Putative nucleotidyltransferase DUF294 CBS PF00571.28 EME72008.1 - 8.8e-19 67.7 1.7 2.2e-12 47.2 0.1 2.4 2 0 0 2 2 2 2 CBS domain RNase_T PF00929.24 EME72009.1 - 2.9e-24 86.5 0.0 4.1e-24 86.0 0.0 1.2 1 0 0 1 1 1 1 Exonuclease DUF5051 PF16473.5 EME72009.1 - 2.7e-05 24.2 0.0 5.7e-05 23.2 0.0 1.5 1 1 0 1 1 1 1 3' exoribonuclease, RNase T-like PAS PF00989.25 EME72009.1 - 0.0014 18.6 0.0 0.004 17.1 0.0 1.8 1 0 0 1 1 1 1 PAS fold DNA_pol_A_exo1 PF01612.20 EME72009.1 - 0.19 11.5 0.0 2.5 7.8 0.0 2.2 1 1 0 1 1 1 0 3'-5' exonuclease PemK_toxin PF02452.17 EME72010.1 - 6.3e-18 65.2 0.0 7e-18 65.0 0.0 1.0 1 0 0 1 1 1 1 PemK-like, MazF-like toxin of type II toxin-antitoxin system MazE_antitoxin PF04014.18 EME72011.1 - 4e-08 33.0 0.0 5.4e-08 32.6 0.0 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin SBP_bac_3 PF00497.20 EME72013.1 - 7.2e-63 212.0 0.0 5.6e-32 111.0 0.0 2.3 2 0 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 3 HATPase_c PF02518.26 EME72013.1 - 9.2e-24 84.1 0.0 2.1e-23 82.9 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 EME72013.1 - 3.1e-09 36.7 0.0 1.2e-08 34.8 0.0 2.1 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.6 EME72013.1 - 1.8e-06 27.8 0.0 6.6e-06 26.0 0.0 1.9 2 0 0 2 2 2 1 GHKL domain NMT1 PF09084.11 EME72013.1 - 0.00015 21.8 0.0 0.023 14.7 0.0 2.5 2 0 0 2 2 2 1 NMT1/THI5 like HATPase_c_2 PF13581.6 EME72013.1 - 0.018 15.0 0.0 0.036 14.0 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 EME72013.1 - 0.033 14.0 0.0 0.068 13.0 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PTA_PTB PF01515.19 EME72013.1 - 0.19 11.0 0.0 0.32 10.3 0.0 1.3 1 0 0 1 1 1 0 Phosphate acetyl/butaryl transferase Phage_integrase PF00589.22 EME72014.1 - 5.6e-19 68.6 0.0 9.5e-19 67.8 0.0 1.3 1 0 0 1 1 1 1 Phage integrase family Phage_integrase PF00589.22 EME72015.1 - 1e-28 100.2 0.0 1.2e-28 100.0 0.0 1.0 1 0 0 1 1 1 1 Phage integrase family Hairy_orange PF07527.13 EME72015.1 - 0.058 13.6 0.0 0.54 10.5 0.0 2.3 1 1 0 1 1 1 0 Hairy Orange CtIP_N PF10482.9 EME72017.1 - 0.1 12.6 0.1 0.21 11.7 0.0 1.5 2 0 0 2 2 2 0 Tumour-suppressor protein CtIP N-terminal domain DNA_methylase PF00145.17 EME72018.1 - 2.2e-53 181.8 0.0 3.2e-53 181.2 0.0 1.2 1 0 0 1 1 1 1 C-5 cytosine-specific DNA methylase MethyltransfD12 PF02086.15 EME72020.1 - 5.6e-05 23.0 0.0 6.8e-05 22.7 0.0 1.1 1 0 0 1 1 1 1 D12 class N6 adenine-specific DNA methyltransferase GHL6 PF14871.6 EME72020.1 - 0.023 14.8 0.0 0.048 13.8 0.0 1.4 2 0 0 2 2 2 0 Hypothetical glycosyl hydrolase 6 DEAD PF00270.29 EME72021.1 - 7.3e-05 22.6 0.0 0.00026 20.8 0.0 1.9 2 0 0 2 2 2 1 DEAD/DEAH box helicase Flavi_DEAD PF07652.14 EME72021.1 - 0.016 15.2 0.0 0.035 14.1 0.0 1.5 1 0 0 1 1 1 0 Flavivirus DEAD domain AT_hook PF02178.19 EME72022.1 - 5.2 7.3 8.7 0.76 9.9 4.3 2.0 2 0 0 2 2 2 0 AT hook motif MitoNEET_N PF10660.9 EME72023.1 - 0.025 14.6 0.2 0.067 13.2 0.0 1.6 2 0 0 2 2 2 0 Iron-containing outer mitochondrial membrane protein N-terminus Tlr3_TMD PF17968.1 EME72023.1 - 1.1 9.5 0.1 1.1 9.5 0.1 2.1 2 0 0 2 2 2 0 Toll-like receptor 3 trans-membrane domain Phage_prot_Gp6 PF05133.14 EME72024.1 - 0.0086 15.2 0.1 0.011 14.9 0.1 1.0 1 0 0 1 1 1 1 Phage portal protein, SPP1 Gp6-like OHCU_decarbox PF09349.10 EME72024.1 - 0.059 13.9 0.0 0.068 13.7 0.0 1.2 1 0 0 1 1 1 0 OHCU decarboxylase ORF_12_N PF18042.1 EME72024.1 - 0.069 13.6 0.0 0.084 13.3 0.0 1.2 1 0 0 1 1 1 0 ORF 12 gene product N-terminal Trypsin_2 PF13365.6 EME72027.1 - 5.2e-20 72.9 0.4 7.1e-20 72.4 0.4 1.2 1 0 0 1 1 1 1 Trypsin-like peptidase domain Trypsin PF00089.26 EME72027.1 - 3.4e-09 36.9 0.0 4.9e-09 36.3 0.0 1.2 1 0 0 1 1 1 1 Trypsin Peptidase_S46 PF10459.9 EME72027.1 - 0.0012 17.7 0.1 0.0016 17.2 0.1 1.1 1 0 0 1 1 1 1 Peptidase S46 Peptidase_S29 PF02907.15 EME72027.1 - 0.026 14.3 0.1 0.14 11.9 0.0 2.0 2 0 0 2 2 2 0 Hepatitis C virus NS3 protease Peptidase_S32 PF05579.13 EME72027.1 - 0.087 12.0 0.9 0.79 8.9 0.9 2.0 1 1 0 1 1 1 0 Equine arteritis virus serine endopeptidase S32 DUF4384 PF14326.6 EME72028.1 - 1.1e-07 31.8 0.1 4.7e-07 29.8 0.1 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4384) DUF3592 PF12158.8 EME72028.1 - 0.033 14.3 0.1 0.063 13.3 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3592) TPR_2 PF07719.17 EME72029.1 - 1.1e-12 47.0 13.6 0.011 15.7 1.1 5.4 4 1 1 5 5 5 4 Tetratricopeptide repeat TPR_19 PF14559.6 EME72029.1 - 4.1e-11 43.2 11.0 1.5e-05 25.4 2.0 3.6 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_1 PF00515.28 EME72029.1 - 1.3e-09 37.4 8.0 0.026 14.3 1.0 5.1 4 1 1 5 5 5 4 Tetratricopeptide repeat TPR_8 PF13181.6 EME72029.1 - 1.1e-08 34.6 3.7 0.034 14.3 0.0 4.9 4 1 1 5 5 5 2 Tetratricopeptide repeat TPR_16 PF13432.6 EME72029.1 - 1.6e-08 35.0 24.1 0.00017 22.1 5.4 4.0 1 1 3 4 4 4 4 Tetratricopeptide repeat DUF799 PF05643.11 EME72029.1 - 3.3e-06 26.8 0.0 5.5e-06 26.1 0.0 1.3 1 0 0 1 1 1 1 Putative bacterial lipoprotein (DUF799) TPR_14 PF13428.6 EME72029.1 - 3.7e-05 24.2 19.3 0.0019 18.8 1.7 5.3 2 1 4 6 6 6 1 Tetratricopeptide repeat ANAPC3 PF12895.7 EME72029.1 - 0.00014 22.0 1.6 0.18 12.0 0.2 2.5 2 0 0 2 2 2 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_9 PF13371.6 EME72029.1 - 0.00023 21.2 6.3 0.065 13.4 1.1 3.6 2 1 1 3 3 3 1 Tetratricopeptide repeat TPR_6 PF13174.6 EME72029.1 - 0.00027 21.4 7.0 0.01 16.4 0.8 4.6 4 1 1 5 5 5 1 Tetratricopeptide repeat TPR_12 PF13424.6 EME72029.1 - 0.00062 20.0 11.8 0.071 13.4 0.2 3.5 2 1 1 3 3 3 2 Tetratricopeptide repeat TPR_17 PF13431.6 EME72029.1 - 0.00085 19.5 7.6 0.93 10.0 0.0 4.5 3 1 1 4 4 4 1 Tetratricopeptide repeat TPR_7 PF13176.6 EME72029.1 - 0.0023 17.8 0.2 9.9 6.5 0.1 3.9 2 1 1 3 3 3 1 Tetratricopeptide repeat TPR_4 PF07721.14 EME72029.1 - 0.0082 16.7 11.6 2.8 8.8 0.2 4.5 3 1 1 4 4 3 1 Tetratricopeptide repeat TPR_11 PF13414.6 EME72029.1 - 0.0092 15.6 9.8 0.65 9.7 0.4 3.8 2 1 2 4 4 4 2 TPR repeat LptE PF04390.12 EME72029.1 - 0.083 13.6 0.0 0.15 12.8 0.0 1.5 1 0 0 1 1 1 0 Lipopolysaccharide-assembly HemY_N PF07219.13 EME72029.1 - 0.38 11.0 4.9 5.9 7.1 0.0 2.9 2 1 1 3 3 3 0 HemY protein N-terminus TPR_21 PF09976.9 EME72029.1 - 1.2 8.8 8.0 0.87 9.3 5.7 1.8 1 1 0 1 1 1 0 Tetratricopeptide repeat-like domain Elf4 PF07011.11 EME72030.1 - 0.035 14.0 0.0 10 6.1 0.0 2.5 2 0 0 2 2 2 0 Early Flowering 4 domain DUF4883 PF16224.5 EME72030.1 - 0.16 12.2 0.0 0.24 11.7 0.0 1.3 1 0 0 1 1 1 0 DOmain of unknown function (DUF4883) LPAM_1 PF08139.12 EME72030.1 - 0.51 10.9 3.3 0.93 10.1 3.3 1.5 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site DUF5615 PF18480.1 EME72031.1 - 1e-15 57.2 0.0 1.5e-15 56.7 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF5615) PIN_10 PF18478.1 EME72031.1 - 2.7e-05 24.3 0.0 4.4e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 PIN like domain DUF433 PF04255.14 EME72032.1 - 1.7e-14 53.4 0.0 2.2e-14 53.1 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF433) Peptidase_C14 PF00656.22 EME72035.1 - 1.3e-14 54.8 0.0 1.6e-14 54.5 0.0 1.1 1 0 0 1 1 1 1 Caspase domain Peptidase_C13 PF01650.18 EME72035.1 - 0.12 11.8 0.0 0.16 11.5 0.0 1.3 1 0 0 1 1 1 0 Peptidase C13 family DUF5516 PF17637.2 EME72036.1 - 0.00059 19.5 9.8 0.022 14.5 2.5 2.9 3 0 0 3 3 3 2 Family of unknown function (DUF5516) CstA PF02554.14 EME72036.1 - 0.017 14.0 1.3 0.019 13.9 1.3 1.0 1 0 0 1 1 1 0 Carbon starvation protein CstA DUF2069 PF09842.9 EME72036.1 - 0.038 14.2 3.9 0.063 13.5 1.9 1.9 1 1 1 2 2 2 0 Predicted membrane protein (DUF2069) PLDc_2 PF13091.6 EME72037.1 - 1.8e-28 99.1 0.3 2.2e-28 98.8 0.3 1.1 1 0 0 1 1 1 1 PLD-like domain FAM83 PF07894.12 EME72037.1 - 2.1e-08 34.0 0.3 9.8e-08 31.9 0.3 1.8 1 1 0 1 1 1 1 FAM83 A-H Regulator_TrmB PF11495.8 EME72037.1 - 0.00058 19.1 0.1 0.00086 18.6 0.1 1.2 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB PLDc PF00614.22 EME72037.1 - 0.0029 17.7 0.1 0.013 15.7 0.0 2.1 2 0 0 2 2 2 1 Phospholipase D Active site motif PP_kinase_C_1 PF17941.1 EME72037.1 - 0.0087 15.6 0.2 0.013 15.0 0.2 1.3 1 0 0 1 1 1 1 Polyphosphate kinase C-terminal domain 1 DUF1414 PF07208.11 EME72037.1 - 0.1 12.6 0.0 0.3 11.1 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF1414) Sigma70_r2 PF04542.14 EME72039.1 - 0.0043 16.8 0.4 0.0043 16.8 0.4 3.1 3 1 0 3 3 3 1 Sigma-70 region 2 Sigma70_r4 PF04545.16 EME72039.1 - 0.26 10.8 3.0 0.17 11.5 1.0 1.8 2 0 0 2 2 2 0 Sigma-70, region 4 Resolvase PF00239.21 EME72041.1 - 3.2e-41 140.9 0.5 3.9e-41 140.6 0.5 1.1 1 0 0 1 1 1 1 Resolvase, N terminal domain HTH_7 PF02796.15 EME72041.1 - 3.9e-08 33.2 0.5 7.7e-08 32.3 0.1 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain of resolvase HTH_IclR PF09339.10 EME72041.1 - 0.00017 21.3 0.1 0.0008 19.2 0.0 2.1 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_23 PF13384.6 EME72041.1 - 0.00067 19.4 0.0 0.0016 18.2 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.6 EME72041.1 - 0.0013 18.7 1.6 0.0051 16.8 0.1 2.2 1 1 1 2 2 2 1 Winged helix-turn helix HTH_28 PF13518.6 EME72041.1 - 0.0023 18.0 0.0 0.0052 16.9 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_22 PF13309.6 EME72041.1 - 0.014 15.5 0.0 0.026 14.6 0.0 1.6 1 0 0 1 1 1 0 HTH domain TrmB PF01978.19 EME72041.1 - 0.036 14.0 0.0 0.059 13.3 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB TetR_N PF00440.23 EME72041.1 - 0.04 13.7 0.4 0.13 12.1 0.1 2.1 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family HTH_17 PF12728.7 EME72041.1 - 0.046 13.9 0.0 0.12 12.6 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_26 PF13443.6 EME72041.1 - 0.048 14.1 0.6 1.9 9.0 0.0 2.8 3 1 0 3 3 3 0 Cro/C1-type HTH DNA-binding domain GerE PF00196.19 EME72041.1 - 0.049 13.2 0.0 0.1 12.2 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_38 PF13936.6 EME72041.1 - 0.084 12.7 1.4 0.16 11.8 0.1 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain Phage_integrase PF00589.22 EME72042.1 - 4.8e-06 26.5 0.5 9.2e-06 25.6 0.5 1.5 1 0 0 1 1 1 1 Phage integrase family GCV_T PF01571.21 EME72043.1 - 1.9e-10 40.5 0.0 6.8e-10 38.7 0.0 1.8 2 0 0 2 2 2 1 Aminomethyltransferase folate-binding domain Glyco_trans_1_4 PF13692.6 EME72044.1 - 9.7e-10 39.0 0.1 1.5e-09 38.4 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 EME72044.1 - 1.2e-06 28.1 0.0 1.9e-06 27.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 EME72044.1 - 0.0012 19.2 0.0 0.0022 18.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 EME72044.1 - 0.054 13.5 1.9 0.064 13.3 0.1 2.0 2 1 1 3 3 3 0 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.6 EME72045.1 - 7.9e-34 117.0 0.0 1.5e-33 116.0 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 EME72045.1 - 8.1e-33 113.4 0.0 1.2e-32 112.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 EME72045.1 - 5.7e-13 49.2 1.4 1.7e-11 44.4 0.9 2.8 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 EME72045.1 - 7.9e-12 45.4 0.0 1.8e-11 44.3 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 EME72045.1 - 3.5e-10 40.5 13.8 1.5e-06 28.7 2.8 3.4 2 2 1 3 3 3 2 Glycosyl transferase 4-like domain Asn_synthase PF00733.21 EME72046.1 - 2e-79 267.9 0.0 2.5e-79 267.5 0.0 1.1 1 0 0 1 1 1 1 Asparagine synthase GATase_7 PF13537.6 EME72046.1 - 3.8e-36 123.7 0.0 9.1e-36 122.5 0.0 1.6 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_6 PF13522.6 EME72046.1 - 1.7e-26 93.0 0.0 7e-26 91.0 0.0 2.0 2 0 0 2 2 2 1 Glutamine amidotransferase domain NAD_synthase PF02540.17 EME72046.1 - 0.045 12.9 0.0 0.063 12.4 0.0 1.2 1 0 0 1 1 1 0 NAD synthase QueC PF06508.13 EME72046.1 - 0.14 11.6 0.0 0.22 11.0 0.0 1.2 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC Amidohydro_1 PF01979.20 EME72047.1 - 3.6e-26 92.3 0.0 8.4e-26 91.1 0.0 1.5 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 EME72047.1 - 2.2e-12 47.2 0.6 1e-07 31.8 0.0 3.2 3 0 0 3 3 3 2 Amidohydrolase family Urease_alpha PF00449.20 EME72047.1 - 0.046 14.1 0.1 0.12 12.8 0.1 1.7 1 0 0 1 1 1 0 Urease alpha-subunit, N-terminal domain HATPase_c PF02518.26 EME72048.1 - 8.3e-22 77.8 0.0 1.7e-21 76.8 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dCache_1 PF02743.18 EME72048.1 - 1e-17 64.8 0.0 1.7e-17 64.0 0.0 1.4 1 0 0 1 1 1 1 Cache domain HisKA PF00512.25 EME72048.1 - 1.2e-12 47.7 1.5 5e-12 45.7 0.0 2.5 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS PF00989.25 EME72048.1 - 5e-11 42.6 0.0 1.3e-10 41.2 0.0 1.8 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 EME72048.1 - 9.6e-08 32.2 0.0 4.2e-07 30.2 0.0 2.1 2 0 0 2 2 2 1 PAS domain PAS_4 PF08448.10 EME72048.1 - 1.4e-06 28.5 0.1 5.3e-06 26.7 0.0 2.1 2 0 0 2 2 2 1 PAS fold HATPase_c_5 PF14501.6 EME72048.1 - 1.5e-05 24.8 0.0 3.2e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 GHKL domain PAS_8 PF13188.7 EME72048.1 - 0.0004 20.3 0.0 0.0016 18.4 0.0 2.1 2 0 0 2 2 2 1 PAS domain HATPase_c_2 PF13581.6 EME72048.1 - 0.013 15.5 0.1 0.045 13.7 0.0 2.0 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain PAS_7 PF12860.7 EME72048.1 - 0.11 12.7 0.0 0.45 10.7 0.0 2.1 1 1 0 1 1 1 0 PAS fold FeS_assembly_P PF01883.19 EME72049.1 - 5.6e-17 61.7 1.2 7.4e-17 61.3 1.2 1.2 1 0 0 1 1 1 1 Iron-sulfur cluster assembly protein YesK PF14150.6 EME72050.1 - 3.4 7.9 9.0 0.11 12.7 0.8 2.7 3 1 0 3 3 3 0 YesK-like protein HrpB_C PF08482.10 EME72051.1 - 2.6e-53 180.0 0.0 4.3e-53 179.3 0.0 1.4 1 0 0 1 1 1 1 ATP-dependent helicase C-terminal Helicase_C PF00271.31 EME72051.1 - 2.9e-13 50.1 0.0 4.6e-13 49.5 0.0 1.3 1 0 0 1 1 1 1 Helicase conserved C-terminal domain HA2 PF04408.23 EME72051.1 - 5.5e-10 39.5 0.0 1e-09 38.6 0.0 1.4 1 0 0 1 1 1 1 Helicase associated domain (HA2) DEAD PF00270.29 EME72051.1 - 1.3e-06 28.3 0.0 2.6e-06 27.3 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase AAA_30 PF13604.6 EME72051.1 - 0.057 13.1 0.0 0.27 11.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain Flavi_DEAD PF07652.14 EME72051.1 - 0.081 12.9 0.0 0.5 10.3 0.0 2.4 3 1 0 3 3 3 0 Flavivirus DEAD domain Cytochrom_C PF00034.21 EME72052.1 - 9.8e-11 42.7 0.0 1.3e-10 42.3 0.0 1.2 1 0 0 1 1 1 1 Cytochrome c Cytochrome_CBB3 PF13442.6 EME72052.1 - 8.1e-05 22.9 3.1 0.00051 20.3 3.1 1.9 1 1 0 1 1 1 1 Cytochrome C oxidase, cbb3-type, subunit III NMT1_3 PF16868.5 EME72054.1 - 1.9e-57 194.9 0.0 2.3e-57 194.6 0.0 1.0 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.11 EME72054.1 - 1.3e-07 31.8 0.0 3.2e-07 30.5 0.0 1.6 1 1 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.7 EME72054.1 - 4.7e-06 26.4 0.3 1e-05 25.3 0.2 1.5 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1_2 PF13379.6 EME72054.1 - 4.9e-05 23.1 0.1 8.7e-05 22.3 0.1 1.4 1 1 0 1 1 1 1 NMT1-like family CHAP PF05257.16 EME72055.1 - 5.1e-09 36.6 1.5 5.1e-09 36.6 1.5 1.8 1 1 1 2 2 2 1 CHAP domain GerE PF00196.19 EME72056.1 - 4.1e-19 67.9 0.0 6.2e-19 67.3 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Response_reg PF00072.24 EME72056.1 - 4.2e-14 52.7 0.0 5.5e-14 52.3 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain Sigma70_r4_2 PF08281.12 EME72056.1 - 2e-05 24.2 0.0 3.3e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_20 PF12840.7 EME72056.1 - 0.00027 20.9 0.0 0.00067 19.7 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 EME72056.1 - 0.00036 20.0 0.0 0.00062 19.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Sigma70_r4 PF04545.16 EME72056.1 - 0.0048 16.4 0.0 0.01 15.3 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_10 PF04967.12 EME72056.1 - 0.061 13.1 0.0 0.39 10.6 0.0 2.2 1 1 0 1 1 1 0 HTH DNA binding domain Hit1_C PF18268.1 EME72056.1 - 0.22 11.7 0.0 0.35 11.0 0.0 1.3 1 0 0 1 1 1 0 Hit1 C-terminal Rubrerythrin PF02915.17 EME72057.1 - 2.6e-12 47.3 5.4 8e-07 29.5 0.5 2.1 2 0 0 2 2 2 2 Rubrerythrin Ferritin_2 PF13668.6 EME72057.1 - 7.4e-06 26.2 3.2 0.00012 22.3 0.1 2.1 2 0 0 2 2 2 1 Ferritin-like domain Ferritin PF00210.24 EME72057.1 - 0.0025 17.8 7.9 0.013 15.4 7.9 2.0 1 1 0 1 1 1 1 Ferritin-like domain DUF2383 PF09537.10 EME72057.1 - 0.0057 17.0 0.5 0.051 13.9 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF2383) COQ7 PF03232.13 EME72057.1 - 0.021 14.6 1.2 0.19 11.5 0.2 2.1 2 0 0 2 2 2 0 Ubiquinone biosynthesis protein COQ7 DUF305 PF03713.13 EME72057.1 - 0.041 14.0 4.9 0.22 11.7 0.2 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF305) HSCB_C PF07743.13 EME72057.1 - 0.052 14.0 5.4 0.16 12.5 1.4 2.2 2 0 0 2 2 2 0 HSCB C-terminal oligomerisation domain DUF1088 PF06469.11 EME72057.1 - 0.058 13.1 0.8 0.088 12.5 0.2 1.5 2 0 0 2 2 2 0 Domain of Unknown Function (DUF1088) Fe-ADH PF00465.19 EME72057.1 - 0.18 10.6 1.5 0.21 10.3 0.2 1.6 2 0 0 2 2 2 0 Iron-containing alcohol dehydrogenase EamA PF00892.20 EME72058.1 - 1.6e-16 60.7 30.7 4.6e-12 46.3 12.8 2.0 2 0 0 2 2 2 2 EamA-like transporter family DUF2946 PF11162.8 EME72060.1 - 2.2 9.0 18.7 2.7 8.7 18.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2946) HlyD_3 PF13437.6 EME72061.1 - 1.8e-11 44.6 2.3 2.6e-09 37.7 1.2 3.5 3 1 1 4 4 4 2 HlyD family secretion protein HlyD_D23 PF16576.5 EME72061.1 - 5.6e-11 42.1 0.3 1.6e-10 40.6 0.2 1.7 1 1 1 2 2 2 1 Barrel-sandwich domain of CusB or HlyD membrane-fusion Biotin_lipoyl_2 PF13533.6 EME72061.1 - 0.00052 19.8 4.1 0.14 12.1 0.0 3.0 3 0 0 3 3 3 2 Biotin-lipoyl like Biotin_lipoyl PF00364.22 EME72061.1 - 0.0014 18.4 0.2 0.44 10.4 0.3 2.5 2 0 0 2 2 2 2 Biotin-requiring enzyme ACR_tran PF00873.19 EME72062.1 - 5.1e-253 842.2 14.0 5.8e-253 842.0 14.0 1.0 1 0 0 1 1 1 1 AcrB/AcrD/AcrF family MMPL PF03176.15 EME72062.1 - 1.4e-05 24.2 37.4 0.00086 18.3 13.6 2.6 2 0 0 2 2 2 2 MMPL family HHH_5 PF14520.6 EME72062.1 - 0.00037 21.0 2.1 0.047 14.3 0.1 3.5 4 0 0 4 4 4 1 Helix-hairpin-helix domain SecD_SecF PF02355.16 EME72062.1 - 0.00066 19.1 21.1 0.007 15.8 2.3 2.3 2 0 0 2 2 2 2 Protein export membrane protein Cytochrome_CBB3 PF13442.6 EME72063.1 - 2.7e-07 30.8 0.1 5e-07 30.0 0.1 1.5 1 0 0 1 1 1 1 Cytochrome C oxidase, cbb3-type, subunit III Cytochrom_C PF00034.21 EME72063.1 - 4.4e-07 30.9 0.0 8e-07 30.1 0.0 1.4 1 0 0 1 1 1 1 Cytochrome c Cytochrom_C550 PF14495.6 EME72063.1 - 0.18 11.5 0.0 0.33 10.7 0.0 1.3 1 0 0 1 1 1 0 Cytochrome c-550 domain DUF411 PF04214.13 EME72064.1 - 1.8e-32 111.1 0.2 2.4e-32 110.7 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF PepSY_2 PF13670.6 EME72064.1 - 0.024 14.6 3.0 0.095 12.7 3.0 1.8 1 1 0 1 1 1 0 Peptidase propeptide and YPEB domain DUF836 PF05768.14 EME72064.1 - 0.029 14.8 0.0 0.04 14.3 0.0 1.2 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) Glutaredoxin PF00462.24 EME72064.1 - 0.036 14.3 0.0 0.063 13.5 0.0 1.3 1 0 0 1 1 1 0 Glutaredoxin AMP-binding_C_2 PF14535.6 EME72065.1 - 1.3e-24 86.3 0.0 2.5e-24 85.4 0.0 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 EME72065.1 - 3.8e-14 52.1 1.0 9.4e-14 50.8 1.0 1.5 1 1 0 1 1 1 1 AMP-binding enzyme Succ_CoA_lig PF13607.6 EME72066.1 - 1.4e-33 115.6 0.5 4.8e-33 113.9 0.1 2.2 3 0 0 3 3 3 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 EME72066.1 - 6e-15 55.8 1.1 1.4e-14 54.6 0.0 2.2 3 0 0 3 3 3 1 CoA binding domain CoA_binding PF02629.19 EME72066.1 - 0.0012 19.5 0.0 0.0042 17.7 0.0 2.0 1 0 0 1 1 1 1 CoA binding domain GFO_IDH_MocA PF01408.22 EME72066.1 - 0.046 14.5 0.1 2.6 8.9 0.0 2.5 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold DmsC PF04976.12 EME72067.1 - 3e-05 23.7 5.4 3e-05 23.7 5.4 2.5 1 1 1 2 2 2 1 DMSO reductase anchor subunit (DmsC) Fer4_7 PF12838.7 EME72068.1 - 1.7e-15 57.3 22.5 1.8e-06 28.4 2.5 3.2 3 0 0 3 3 3 3 4Fe-4S dicluster domain Fer4_11 PF13247.6 EME72068.1 - 2.8e-15 56.2 18.7 4.4e-12 46.0 12.6 3.6 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 EME72068.1 - 1.4e-13 50.7 19.4 4.2e-09 36.4 1.2 3.3 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.6 EME72068.1 - 2.2e-12 46.9 16.8 2e-06 27.9 2.4 2.7 2 2 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 EME72068.1 - 4.3e-09 35.9 35.9 9.9e-06 25.4 1.4 4.4 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4 PF00037.27 EME72068.1 - 2.3e-08 33.5 14.2 1.4e-07 31.1 4.7 5.1 6 0 0 6 6 6 2 4Fe-4S binding domain Fer4_16 PF13484.6 EME72068.1 - 2.3e-07 31.7 20.0 0.0037 18.2 2.3 4.2 4 0 0 4 4 4 3 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 EME72068.1 - 1.3e-06 28.8 18.3 0.0011 19.4 2.3 4.0 4 0 0 4 4 4 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 EME72068.1 - 2.5e-06 27.3 4.2 2.5e-06 27.3 4.2 4.5 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_8 PF13183.6 EME72068.1 - 7.1e-06 26.4 20.2 0.0018 18.6 1.6 3.4 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 EME72068.1 - 6.5e-05 23.1 32.7 0.015 15.8 2.3 4.7 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_3 PF12798.7 EME72068.1 - 0.0001 23.0 36.2 0.069 14.1 4.7 4.4 4 1 0 4 4 4 4 4Fe-4S binding domain Fer4_15 PF13459.6 EME72068.1 - 0.0088 16.8 1.2 0.0088 16.8 1.2 3.0 3 1 0 3 3 3 2 4Fe-4S single cluster domain Fer4_21 PF14697.6 EME72068.1 - 0.0092 16.1 4.8 0.0092 16.1 4.8 3.5 2 1 2 4 4 4 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 EME72068.1 - 1.7 9.5 24.9 0.15 12.9 2.0 4.0 2 1 3 5 5 5 0 4Fe-4S dicluster domain Molybdopterin PF00384.22 EME72069.1 - 2.8e-26 92.5 0.0 1.3e-25 90.3 0.0 2.1 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 EME72069.1 - 2.6e-10 40.3 0.1 4.7e-10 39.5 0.1 1.4 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain 4HBT PF03061.22 EME72070.1 - 0.0012 19.1 0.0 0.002 18.4 0.0 1.4 1 0 0 1 1 1 1 Thioesterase superfamily NTS PF15447.6 EME72070.1 - 0.01 16.3 0.0 0.022 15.2 0.0 1.6 1 0 0 1 1 1 0 N-terminal segments of PfEMP1 AWPM-19 PF05512.11 EME72071.1 - 0.049 13.8 0.5 0.099 12.8 0.5 1.5 1 0 0 1 1 1 0 AWPM-19-like family ATP-grasp_5 PF13549.6 EME72072.1 - 4.4e-78 261.8 0.1 6.6e-78 261.2 0.1 1.3 1 0 0 1 1 1 1 ATP-grasp domain Succ_CoA_lig PF13607.6 EME72072.1 - 1e-46 158.2 0.0 2.2e-46 157.1 0.0 1.6 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 EME72072.1 - 2.9e-23 82.6 0.1 3.3e-21 75.9 0.0 3.8 3 0 0 3 3 3 1 CoA binding domain Acetyltransf_3 PF13302.7 EME72072.1 - 2.1e-09 38.2 0.0 4.6e-09 37.1 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 EME72072.1 - 1.8e-07 31.4 0.0 4.1e-07 30.2 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family CoA_binding PF02629.19 EME72072.1 - 2.2e-07 31.5 0.0 6.4e-07 30.0 0.0 1.8 1 0 0 1 1 1 1 CoA binding domain Acetyltransf_4 PF13420.7 EME72072.1 - 1.3e-05 25.4 0.0 2.3e-05 24.6 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 EME72072.1 - 0.0053 16.7 0.1 0.016 15.1 0.1 1.8 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.6 EME72072.1 - 0.013 15.1 0.0 0.04 13.6 0.0 1.8 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 EME72072.1 - 0.16 12.4 0.0 0.43 11.0 0.0 1.8 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 EME72072.1 - 0.16 11.9 0.0 0.33 10.9 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain tRNA-synt_1e PF01406.19 EME72074.1 - 4.4e-116 387.5 0.0 5.3e-116 387.2 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain DALR_2 PF09190.11 EME72074.1 - 1.3e-14 54.4 0.2 3.5e-14 53.0 0.0 1.9 2 0 0 2 2 2 1 DALR domain tRNA-synt_1g PF09334.11 EME72074.1 - 5.6e-07 28.6 0.0 0.024 13.4 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1 PF00133.22 EME72074.1 - 0.00012 20.5 0.0 0.00018 19.9 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1f PF01921.18 EME72074.1 - 0.00092 18.2 0.0 0.52 9.2 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1c PF00749.21 EME72075.1 - 4.6e-65 219.6 0.0 5.7e-65 219.3 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain NAD_synthase PF02540.17 EME72076.1 - 5.2e-70 235.3 0.0 6.8e-70 234.9 0.0 1.1 1 0 0 1 1 1 1 NAD synthase CN_hydrolase PF00795.22 EME72076.1 - 7.6e-32 110.7 0.0 1.1e-31 110.2 0.0 1.1 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase QueC PF06508.13 EME72076.1 - 0.026 14.0 0.0 0.056 12.9 0.0 1.5 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 EME72076.1 - 0.038 13.7 0.0 0.078 12.6 0.0 1.4 1 0 0 1 1 1 0 Asparagine synthase tRNA_Me_trans PF03054.16 EME72076.1 - 0.12 11.2 0.0 0.19 10.5 0.0 1.2 1 0 0 1 1 1 0 tRNA methyl transferase # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Magnetospirillum_sp._SO-1-MagSO-1_1.0/GCA_000342045.1_MagSO-1_1.0_protein.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Magnetospirillum_sp._SO-1-MagSO-1_1.0/GCA_000342045.1_MagSO-1_1.0_protein.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Magnetospirillum_sp._SO-1-MagSO-1_1.0/GCA_000342045.1_MagSO-1_1.0_protein.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Magnetospirillum_sp._SO-1-MagSO-1_1.0/GCA_000342045.1_MagSO-1_1.0_protein.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Sun Mar 24 03:05:12 2019 # [ok]