# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- HTH_33 PF13592.6 GAJ45693.1 - 0.056 13.1 0.0 0.12 12.1 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn helix DNA_alkylation PF08713.11 GAJ45695.1 - 0.00044 20.0 0.1 0.00049 19.9 0.1 1.0 1 0 0 1 1 1 1 DNA alkylation repair enzyme Phage_portal PF04860.12 GAJ45695.1 - 0.077 12.2 0.0 0.084 12.1 0.0 1.1 1 0 0 1 1 1 0 Phage portal protein DNA_binding_1 PF01035.20 GAJ45696.1 - 1.9e-28 98.4 0.1 3.1e-28 97.7 0.1 1.4 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain HTH_23 PF13384.6 GAJ45697.1 - 2.6e-06 27.1 0.0 3.8e-06 26.5 0.0 1.2 1 0 0 1 1 1 1 Homeodomain-like domain Terminase_5 PF06056.12 GAJ45697.1 - 0.00071 19.4 0.0 0.0012 18.7 0.0 1.3 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_28 PF13518.6 GAJ45697.1 - 0.0016 18.5 0.0 0.0025 17.9 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.6 GAJ45697.1 - 0.0025 17.6 0.0 0.0045 16.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_7 PF02796.15 GAJ45697.1 - 0.023 14.8 0.0 0.038 14.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_6 PF01418.17 GAJ45697.1 - 0.04 13.9 0.0 0.076 13.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family TnsD PF15978.5 GAJ45697.1 - 0.042 12.8 0.0 0.051 12.6 0.0 1.1 1 0 0 1 1 1 0 Tn7-like transposition protein D HTH_Tnp_4 PF13613.6 GAJ45697.1 - 0.061 13.1 0.0 0.1 12.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease HTH_Tnp_1 PF01527.20 GAJ45697.1 - 0.077 13.3 0.0 0.11 12.8 0.0 1.3 1 0 0 1 1 1 0 Transposase Sigma70_r4_2 PF08281.12 GAJ45697.1 - 0.077 12.7 0.0 0.15 11.7 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 CENP-B_N PF04218.13 GAJ45697.1 - 0.093 12.4 0.0 0.18 11.5 0.0 1.4 1 0 0 1 1 1 0 CENP-B N-terminal DNA-binding domain HTH_psq PF05225.16 GAJ45697.1 - 0.11 12.3 0.1 0.26 11.1 0.1 1.7 2 0 0 2 2 2 0 helix-turn-helix, Psq domain GerE PF00196.19 GAJ45697.1 - 0.14 11.7 0.0 0.33 10.5 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_11 PF08279.12 GAJ45697.1 - 0.14 12.1 0.0 0.28 11.2 0.0 1.4 1 0 0 1 1 1 0 HTH domain HTH_AsnC-type PF13404.6 GAJ45697.1 - 0.16 11.8 0.0 0.46 10.4 0.0 1.7 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain Bac_GH3_C PF18034.1 GAJ45697.1 - 0.17 11.6 0.0 0.22 11.3 0.0 1.2 1 0 0 1 1 1 0 Bacterial Glycosyl hydrolase family 3 C-terminal domain DUF772 PF05598.11 GAJ45698.1 - 6e-12 45.4 0.3 7.2e-12 45.2 0.3 1.3 1 0 0 1 1 1 1 Transposase domain (DUF772) DUF1173 PF06666.11 GAJ45699.1 - 0.11 11.4 0.0 0.12 11.3 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1173) DDE_Tnp_1 PF01609.21 GAJ45700.1 - 2.3e-05 24.1 0.0 3.2e-05 23.7 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain Amidase PF01425.21 GAJ45702.1 - 2.1e-142 475.3 0.0 2.4e-142 475.1 0.0 1.0 1 0 0 1 1 1 1 Amidase Glu-tRNAGln PF02686.15 GAJ45703.1 - 3.2e-07 30.6 0.0 5e-07 29.9 0.0 1.3 1 0 0 1 1 1 1 Glu-tRNAGln amidotransferase C subunit Osmo_MPGsynth PF09488.10 GAJ45703.1 - 0.018 13.7 0.0 0.02 13.6 0.0 1.2 1 0 0 1 1 1 0 Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth) PCRF PF03462.18 GAJ45704.1 - 4.4e-61 206.1 0.5 4.4e-61 206.1 0.5 1.9 2 0 0 2 2 2 1 PCRF domain RF-1 PF00472.20 GAJ45704.1 - 3.7e-41 139.7 3.0 8.2e-41 138.6 3.0 1.6 1 0 0 1 1 1 1 RF-1 domain Coilin_N PF15862.5 GAJ45704.1 - 0.014 15.2 1.6 0.032 14.0 1.2 1.7 2 0 0 2 2 2 0 Coilin N-terminus MIR PF02815.19 GAJ45704.1 - 0.03 14.2 0.1 0.068 13.0 0.1 1.7 1 0 0 1 1 1 0 MIR domain Myb_Cef PF11831.8 GAJ45704.1 - 0.06 12.9 2.5 0.58 9.7 0.0 2.2 2 0 0 2 2 2 0 pre-mRNA splicing factor component DDE_Tnp_1 PF01609.21 GAJ45705.1 - 8.6e-06 25.5 0.0 9.7e-06 25.4 0.0 1.1 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.12 GAJ45705.1 - 0.023 13.9 0.0 0.025 13.8 0.0 1.0 1 0 0 1 1 1 0 Archaeal putative transposase ISC1217 EFG_IV PF03764.18 GAJ45706.1 - 1e-09 38.2 0.1 1.3e-09 37.8 0.1 1.2 1 0 0 1 1 1 1 Elongation factor G, domain IV EFG_C PF00679.24 GAJ45706.1 - 0.00014 21.8 0.0 0.00028 20.9 0.0 1.5 2 0 0 2 2 2 1 Elongation factor G C-terminus Pro_Al_protease PF02983.14 GAJ45706.1 - 0.0029 17.6 0.0 0.0051 16.8 0.0 1.4 1 0 0 1 1 1 1 Alpha-lytic protease prodomain DDE_Tnp_1 PF01609.21 GAJ45707.1 - 2.5e-14 53.4 0.8 3.4e-14 53.0 0.8 1.1 1 0 0 1 1 1 1 Transposase DDE domain OST3_OST6 PF04756.13 GAJ45707.1 - 0.00031 20.2 0.7 0.00048 19.6 0.7 1.3 1 0 0 1 1 1 1 OST3 / OST6 family, transporter family DDE_Tnp_1_4 PF13701.6 GAJ45707.1 - 0.061 11.6 0.1 0.067 11.5 0.1 1.2 1 0 0 1 1 1 0 Transposase DDE domain group 1 DDE_Tnp_1 PF01609.21 GAJ45709.1 - 4.3e-06 26.5 0.1 4.7e-06 26.4 0.1 1.1 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.12 GAJ45709.1 - 0.032 13.5 0.1 0.034 13.4 0.1 1.0 1 0 0 1 1 1 0 Archaeal putative transposase ISC1217 Bac_DNA_binding PF00216.21 GAJ45710.1 - 0.16 12.2 0.0 0.36 11.1 0.0 1.6 1 0 0 1 1 1 0 Bacterial DNA-binding protein DUF2380 PF09533.10 GAJ45711.1 - 0.00042 20.0 0.3 0.00072 19.2 0.3 1.4 1 0 0 1 1 1 1 Predicted lipoprotein of unknown function (DUF2380) DUF3870 PF12986.7 GAJ45711.1 - 0.085 13.1 0.0 0.37 11.1 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF3870) DUF2380 PF09533.10 GAJ45712.1 - 0.0019 17.9 1.1 0.0027 17.4 1.1 1.3 1 0 0 1 1 1 1 Predicted lipoprotein of unknown function (DUF2380) ApoA-II PF04711.13 GAJ45712.1 - 0.12 12.6 0.8 0.23 11.6 0.2 1.7 2 0 0 2 2 2 0 Apolipoprotein A-II (ApoA-II) VPR PF00522.18 GAJ45713.1 - 0.036 14.1 0.8 0.12 12.4 0.0 2.1 2 1 0 2 2 2 0 VPR/VPX protein Med14 PF08638.11 GAJ45713.1 - 0.044 13.2 0.4 0.081 12.3 0.4 1.4 1 0 0 1 1 1 0 Mediator complex subunit MED14 FliS PF02561.14 GAJ45713.1 - 0.37 11.1 2.3 4.3 7.6 0.1 2.2 2 0 0 2 2 2 0 Flagellar protein FliS DUF3741 PF12552.8 GAJ45716.1 - 0.062 13.3 0.2 0.15 12.0 0.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3741) RCSD PF05177.12 GAJ45716.1 - 1.6 9.7 8.9 1.4 9.9 7.4 1.6 1 1 0 1 1 1 0 RCSD region Protoglobin PF11563.8 GAJ45717.1 - 0.013 15.4 0.1 0.013 15.3 0.1 1.1 1 0 0 1 1 1 0 Protoglobin YAcAr PF10686.9 GAJ45718.1 - 0.14 12.2 0.0 0.18 11.8 0.0 1.2 1 0 0 1 1 1 0 YspA, cpYpsA-related SLOG family DDE_3 PF13358.6 GAJ45719.1 - 2.4e-06 27.4 0.0 2.8e-06 27.2 0.0 1.1 1 0 0 1 1 1 1 DDE superfamily endonuclease DUF3870 PF12986.7 GAJ45722.1 - 0.13 12.5 0.0 0.4 10.9 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF3870) HTH_23 PF13384.6 GAJ45723.1 - 0.015 15.0 0.0 0.026 14.3 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain Terminase_5 PF06056.12 GAJ45723.1 - 0.078 12.9 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) HTH_38 PF13936.6 GAJ45723.1 - 0.18 11.6 0.0 0.29 10.9 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain DDE_Tnp_1_2 PF13586.6 GAJ45726.1 - 0.034 14.5 0.1 0.053 13.9 0.1 1.5 1 0 0 1 1 1 0 Transposase DDE domain DDE_Tnp_1 PF01609.21 GAJ45727.1 - 6.5e-08 32.5 0.0 7.3e-08 32.3 0.0 1.1 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 GAJ45727.1 - 0.0094 16.0 0.1 0.03 14.3 0.0 1.7 2 0 0 2 2 2 1 Transposase DDE domain HTH_3 PF01381.22 GAJ45728.1 - 3.5e-08 33.4 0.2 6.2e-08 32.6 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 GAJ45728.1 - 8.5e-05 22.8 0.0 0.00013 22.3 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 GAJ45728.1 - 0.00033 21.0 0.6 0.0008 19.8 0.3 1.9 2 1 0 2 2 2 1 Cro/C1-type HTH DNA-binding domain HTH_19 PF12844.7 GAJ45728.1 - 0.008 16.2 0.0 0.013 15.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.6 GAJ45728.1 - 0.035 14.1 0.2 0.062 13.3 0.2 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Trp_repressor PF01371.19 GAJ45728.1 - 0.066 13.4 0.0 0.14 12.3 0.0 1.5 1 0 0 1 1 1 0 Trp repressor protein Pou PF00157.17 GAJ45728.1 - 0.072 13.1 0.1 0.14 12.2 0.1 1.5 1 0 0 1 1 1 0 Pou domain - N-terminal to homeobox domain PEX11 PF05648.14 GAJ45730.1 - 0.1 12.1 0.2 0.17 11.3 0.2 1.3 1 0 0 1 1 1 0 Peroxisomal biogenesis factor 11 (PEX11) EPSP_synthase PF00275.20 GAJ45732.1 - 2.9e-80 270.0 0.0 3.2e-80 269.9 0.0 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Terminase_5 PF06056.12 GAJ45733.1 - 0.0036 17.2 0.2 0.0064 16.4 0.1 1.5 1 1 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_23 PF13384.6 GAJ45733.1 - 0.043 13.6 0.1 0.058 13.2 0.1 1.3 1 0 0 1 1 1 0 Homeodomain-like domain HTH_29 PF13551.6 GAJ45733.1 - 0.093 12.8 0.0 0.11 12.5 0.0 1.3 1 1 0 1 1 1 0 Winged helix-turn helix zf-RING_4 PF14570.6 GAJ45734.1 - 0.00038 20.2 0.1 0.76 9.6 0.0 4.2 2 1 1 3 3 3 1 RING/Ubox like zinc-binding domain YebG PF07130.12 GAJ45734.1 - 0.0025 17.6 14.3 25 4.8 0.1 7.9 5 1 2 8 8 8 0 YebG protein MgtE_N PF03448.17 GAJ45734.1 - 0.0041 17.7 2.7 1.7 9.3 0.1 5.1 4 1 1 5 5 5 1 MgtE intracellular N domain Pre-PUA PF17832.1 GAJ45734.1 - 0.034 14.8 2.7 0.14 12.9 0.9 2.9 2 0 0 2 2 2 0 Pre-PUA-like domain B12-binding PF02310.19 GAJ45734.1 - 0.043 13.8 0.0 22 5.1 0.0 3.8 3 1 1 4 4 4 0 B12 binding domain FBD PF08387.10 GAJ45734.1 - 0.12 12.3 21.6 44 4.1 0.0 8.3 9 0 0 9 9 9 0 FBD tRNA-synt_1e PF01406.19 GAJ45734.1 - 0.23 10.8 4.3 10 5.4 0.0 4.4 3 1 0 4 4 4 0 tRNA synthetases class I (C) catalytic domain putAbiC PF16872.5 GAJ45734.1 - 0.53 11.0 18.5 15 6.3 0.1 6.5 4 1 4 8 8 8 0 Putative phage abortive infection protein PAPS_reduct PF01507.19 GAJ45735.1 - 0.047 13.7 0.0 0.051 13.6 0.0 1.2 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family Bax1-I PF01027.20 GAJ45736.1 - 1.5e-50 171.9 25.1 1.9e-50 171.6 25.1 1.0 1 0 0 1 1 1 1 Inhibitor of apoptosis-promoting Bax1 HRG PF16954.5 GAJ45736.1 - 0.12 12.8 0.2 0.12 12.8 0.2 3.0 3 1 0 3 3 3 0 Haem-transporter, endosomal/lysosomal, haem-responsive gene DDE_Tnp_IS1 PF03400.13 GAJ45737.1 - 3.4e-05 24.2 0.0 4e-05 24.0 0.0 1.0 1 0 0 1 1 1 1 IS1 transposase HTH_23 PF13384.6 GAJ45738.1 - 0.00011 21.9 0.0 0.00017 21.3 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain HTH_AsnC-type PF13404.6 GAJ45738.1 - 0.0055 16.5 0.1 0.0077 16.0 0.1 1.2 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 GAJ45738.1 - 0.0072 15.9 0.0 0.0091 15.5 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_psq PF05225.16 GAJ45738.1 - 0.0086 15.8 0.1 0.024 14.4 0.1 1.7 2 0 0 2 2 2 1 helix-turn-helix, Psq domain HTH_11 PF08279.12 GAJ45738.1 - 0.0092 15.9 0.1 0.013 15.4 0.1 1.3 1 0 0 1 1 1 1 HTH domain HTH_28 PF13518.6 GAJ45738.1 - 0.016 15.3 0.0 0.023 14.8 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 GAJ45738.1 - 0.022 14.4 0.0 0.082 12.6 0.0 1.8 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_38 PF13936.6 GAJ45738.1 - 0.049 13.4 0.0 0.066 13.0 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain DmpG_comm PF07836.11 GAJ45738.1 - 0.056 13.0 0.0 0.1 12.2 0.0 1.5 1 0 0 1 1 1 0 DmpG-like communication domain HTH_7 PF02796.15 GAJ45738.1 - 0.15 12.1 0.0 0.21 11.7 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase Sigma70_ECF PF07638.11 GAJ45738.1 - 0.15 11.9 0.0 0.17 11.7 0.0 1.2 1 0 0 1 1 1 0 ECF sigma factor DUF3990 PF13151.6 GAJ45739.1 - 0.17 11.6 0.0 0.19 11.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3990) MurJ PF03023.14 GAJ45740.1 - 1.4e-65 221.7 25.9 1.7e-65 221.4 25.9 1.1 1 0 0 1 1 1 1 Lipid II flippase MurJ HTH_23 PF13384.6 GAJ45741.1 - 0.00016 21.3 0.0 0.00022 20.9 0.0 1.2 1 0 0 1 1 1 1 Homeodomain-like domain HTH_38 PF13936.6 GAJ45741.1 - 0.17 11.7 0.0 0.2 11.4 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.6 GAJ45743.1 - 0.0013 18.5 0.0 0.0024 17.6 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.6 GAJ45743.1 - 0.034 14.3 0.1 0.34 11.1 0.0 2.2 2 1 0 2 2 2 0 Helix-turn-helix domain HTH_psq PF05225.16 GAJ45743.1 - 0.059 13.1 0.1 0.096 12.4 0.1 1.3 1 0 0 1 1 1 0 helix-turn-helix, Psq domain SIS PF01380.22 GAJ45744.1 - 2.1e-45 153.8 0.0 2.9e-23 82.1 0.1 2.3 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.6 GAJ45744.1 - 4.9e-24 85.0 0.0 1e-23 84.0 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 GAJ45744.1 - 3.4e-18 65.7 0.0 9.5e-18 64.3 0.0 1.7 2 0 0 2 2 2 1 Glutamine amidotransferase domain DUF3700 PF12481.8 GAJ45744.1 - 0.0082 15.6 0.0 0.015 14.8 0.0 1.4 1 0 0 1 1 1 1 Aluminium induced protein GATase_4 PF13230.6 GAJ45744.1 - 0.024 13.5 0.1 0.04 12.8 0.1 1.3 1 0 0 1 1 1 0 Glutamine amidotransferases class-II GATase_2 PF00310.21 GAJ45744.1 - 0.12 11.0 0.4 0.75 8.4 0.2 2.1 2 1 0 2 2 2 0 Glutamine amidotransferases class-II Myelin_MBP PF01669.17 GAJ45744.1 - 0.2 12.3 0.0 0.4 11.3 0.0 1.4 1 0 0 1 1 1 0 Myelin basic protein HhH-GPD PF00730.25 GAJ45745.1 - 9.4e-19 67.9 0.0 1.5e-18 67.2 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein NUDIX_4 PF14815.6 GAJ45745.1 - 3.4e-13 49.5 0.0 6.7e-13 48.6 0.0 1.5 1 0 0 1 1 1 1 NUDIX domain EndIII_4Fe-2S PF10576.9 GAJ45745.1 - 0.0053 17.1 6.3 0.0092 16.3 6.3 1.4 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH PF00633.23 GAJ45745.1 - 0.047 13.6 0.0 0.14 12.0 0.0 1.8 1 0 0 1 1 1 0 Helix-hairpin-helix motif VAR1 PF05316.12 GAJ45746.1 - 0.0069 15.5 0.6 0.0087 15.2 0.6 1.2 1 0 0 1 1 1 1 Mitochondrial ribosomal protein (VAR1) FcoT PF10862.8 GAJ45747.1 - 0.044 13.4 0.0 0.061 12.9 0.0 1.4 1 0 0 1 1 1 0 FcoT-like thioesterase domain Prok-RING_2 PF14445.6 GAJ45749.1 - 0.021 15.0 0.4 0.17 12.1 0.1 2.4 3 0 0 3 3 3 0 Prokaryotic RING finger family 2 PFO_beta_C PF12367.8 GAJ45749.1 - 0.063 13.4 0.0 0.69 10.1 0.0 2.6 2 0 0 2 2 2 0 Pyruvate ferredoxin oxidoreductase beta subunit C terminal GTP1_OBG PF01018.22 GAJ45750.1 - 1.3e-47 161.2 6.1 1.8e-47 160.8 6.1 1.2 1 0 0 1 1 1 1 GTP1/OBG MMR_HSR1 PF01926.23 GAJ45750.1 - 1.2e-29 102.7 0.0 2.1e-29 101.9 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 GAJ45750.1 - 3.3e-15 55.9 0.0 5.1e-15 55.3 0.0 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B Dynamin_N PF00350.23 GAJ45750.1 - 4.8e-06 26.7 0.0 0.024 14.7 0.0 2.4 1 1 1 2 2 2 2 Dynamin family GTP_EFTU PF00009.27 GAJ45750.1 - 0.00026 20.6 0.0 0.54 9.8 0.0 2.5 2 1 0 2 2 2 2 Elongation factor Tu GTP binding domain Arf PF00025.21 GAJ45750.1 - 0.00028 20.4 0.9 0.0016 18.0 0.9 1.9 1 1 0 1 1 1 1 ADP-ribosylation factor family cobW PF02492.19 GAJ45750.1 - 0.00033 20.3 0.3 0.2 11.2 0.0 2.2 2 0 0 2 2 2 2 CobW/HypB/UreG, nucleotide-binding domain Gtr1_RagA PF04670.12 GAJ45750.1 - 0.0022 17.4 0.2 0.004 16.5 0.2 1.4 1 0 0 1 1 1 1 Gtr1/RagA G protein conserved region ABC_tran PF00005.27 GAJ45750.1 - 0.0023 18.4 0.6 0.01 16.3 0.6 2.1 1 1 0 1 1 1 1 ABC transporter RsgA_GTPase PF03193.16 GAJ45750.1 - 0.0028 17.6 5.6 0.84 9.5 0.3 3.0 2 1 1 3 3 3 2 RsgA GTPase AAA_18 PF13238.6 GAJ45750.1 - 0.017 15.6 0.1 0.12 12.9 0.0 2.3 1 1 0 2 2 2 0 AAA domain MeaB PF03308.16 GAJ45750.1 - 0.018 14.0 0.1 0.1 11.6 0.0 2.0 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB MMR_HSR1_Xtn PF16897.5 GAJ45750.1 - 0.039 14.0 0.1 0.074 13.1 0.1 1.4 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain AAA_22 PF13401.6 GAJ45750.1 - 0.049 13.9 0.0 0.12 12.6 0.0 1.7 1 1 0 1 1 1 0 AAA domain SRPRB PF09439.10 GAJ45750.1 - 0.05 13.0 0.0 0.097 12.1 0.0 1.5 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit AAA_29 PF13555.6 GAJ45750.1 - 0.1 12.4 0.1 0.61 9.9 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain Ploopntkinase3 PF18751.1 GAJ45750.1 - 0.14 12.0 0.0 0.29 11.0 0.0 1.5 1 0 0 1 1 1 0 P-loop Nucleotide Kinase3 ATP_bind_1 PF03029.17 GAJ45750.1 - 0.16 11.7 0.1 15 5.3 0.0 2.2 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_23 PF13476.6 GAJ45750.1 - 0.49 10.9 4.8 4.4 7.7 0.0 2.7 3 0 0 3 3 3 0 AAA domain DDE_Tnp_1 PF01609.21 GAJ45751.1 - 0.00099 18.8 0.0 0.0014 18.3 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain HTH_33 PF13592.6 GAJ45753.1 - 4.4e-08 32.7 0.0 4.7e-08 32.5 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn helix HTH_Tnp_Tc3_2 PF01498.18 GAJ45753.1 - 0.0089 16.3 0.1 0.012 15.9 0.1 1.2 1 0 0 1 1 1 1 Transposase GatD_N PF18195.1 GAJ45753.1 - 0.0089 15.3 0.3 0.015 14.6 0.3 1.4 1 0 0 1 1 1 1 GatD N-terminal domain NleF_casp_inhib PF16809.5 GAJ45753.1 - 0.014 15.3 0.6 0.018 15.0 0.6 1.2 1 1 0 1 1 1 0 NleF caspase inhibitor HTH_11 PF08279.12 GAJ45753.1 - 0.048 13.6 0.1 0.12 12.4 0.0 1.7 2 0 0 2 2 2 0 HTH domain FlhD PF05247.13 GAJ45753.1 - 0.076 13.3 0.0 0.13 12.6 0.0 1.4 1 1 0 1 1 1 0 Flagellar transcriptional activator (FlhD) DDE_Tnp_4 PF13359.6 GAJ45755.1 - 0.00049 19.8 0.0 0.00049 19.8 0.0 1.0 1 0 0 1 1 1 1 DDE superfamily endonuclease Pyr_redox_2 PF07992.14 GAJ45757.1 - 9e-53 179.4 0.0 1.1e-52 179.1 0.0 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 GAJ45757.1 - 1e-28 99.8 0.0 2.4e-28 98.6 0.0 1.7 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 GAJ45757.1 - 3.5e-18 65.9 0.7 4.4e-15 56.0 0.0 3.3 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 GAJ45757.1 - 9.9e-11 41.4 6.3 0.0033 16.7 0.5 3.9 3 1 0 4 4 4 3 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 GAJ45757.1 - 3.9e-09 36.6 0.3 0.0012 19.0 0.2 2.7 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.7 GAJ45757.1 - 3.2e-06 26.8 0.1 4.7e-06 26.2 0.1 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase GIDA PF01134.22 GAJ45757.1 - 5.6e-06 25.7 1.1 4.2e-05 22.8 0.0 2.5 2 1 1 3 3 3 1 Glucose inhibited division protein A FAD_binding_2 PF00890.24 GAJ45757.1 - 2.1e-05 23.8 3.6 0.0032 16.6 1.2 2.9 3 0 0 3 3 3 2 FAD binding domain HI0933_like PF03486.14 GAJ45757.1 - 2.1e-05 23.4 5.8 0.00048 19.0 0.6 3.0 3 0 0 3 3 3 2 HI0933-like protein AlaDh_PNT_C PF01262.21 GAJ45757.1 - 0.0037 16.6 1.0 0.26 10.6 0.0 2.4 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain 2-Hacid_dh_C PF02826.19 GAJ45757.1 - 0.0096 15.3 0.1 0.25 10.7 0.0 2.5 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FAD_binding_3 PF01494.19 GAJ45757.1 - 0.0099 15.2 1.3 3.2 6.9 0.1 2.9 2 1 1 3 3 3 2 FAD binding domain DAO PF01266.24 GAJ45757.1 - 0.13 11.8 7.7 4.8 6.7 2.1 3.5 3 1 1 4 4 4 0 FAD dependent oxidoreductase Lycopene_cycl PF05834.12 GAJ45757.1 - 0.17 10.9 0.8 9.7 5.1 0.6 2.2 2 0 0 2 2 2 0 Lycopene cyclase protein Trp_halogenase PF04820.14 GAJ45757.1 - 0.18 10.6 0.3 0.28 10.0 0.3 1.2 1 0 0 1 1 1 0 Tryptophan halogenase DsbB PF02600.16 GAJ45758.1 - 3.1e-14 53.7 7.9 4e-14 53.3 7.9 1.1 1 0 0 1 1 1 1 Disulfide bond formation protein DsbB Afaf PF15339.6 GAJ45758.1 - 0.13 12.0 0.0 0.18 11.5 0.0 1.1 1 0 0 1 1 1 0 Acrosome formation-associated factor TFIIA PF03153.13 GAJ45759.1 - 1.7e-06 28.3 41.1 2.2e-06 27.9 41.1 1.2 1 0 0 1 1 1 1 Transcription factor IIA, alpha/beta subunit Mem_trans PF03547.18 GAJ45759.1 - 0.74 8.1 3.0 0.84 8.0 3.0 1.2 1 0 0 1 1 1 0 Membrane transport protein Pkinase_fungal PF17667.1 GAJ45759.1 - 1.7 7.3 18.2 2.5 6.8 18.2 1.3 1 0 0 1 1 1 0 Fungal protein kinase Merozoite_SPAM PF07133.11 GAJ45759.1 - 3.1 7.8 28.8 7.5 6.5 28.8 1.6 1 0 0 1 1 1 0 Merozoite surface protein (SPAM) Med15 PF09606.10 GAJ45759.1 - 8.2 5.0 51.3 10 4.6 51.3 1.1 1 0 0 1 1 1 0 ARC105 or Med15 subunit of Mediator complex non-fungal eIF-3_zeta PF05091.12 GAJ45759.1 - 9.7 5.0 36.7 16 4.3 36.7 1.3 1 0 0 1 1 1 0 Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) RuvB_N PF05496.12 GAJ45760.1 - 3.8e-72 241.2 0.0 5.4e-72 240.7 0.0 1.2 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain RuvB_C PF05491.13 GAJ45760.1 - 5e-25 87.2 0.1 1.3e-24 85.8 0.1 1.8 2 0 0 2 2 1 1 RuvB C-terminal winged helix domain AAA_lid_4 PF17864.1 GAJ45760.1 - 4.6e-19 68.0 0.0 7.8e-19 67.2 0.0 1.4 1 0 0 1 1 1 1 RuvB AAA lid domain AAA PF00004.29 GAJ45760.1 - 5.6e-18 65.6 0.0 9.7e-18 64.9 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 GAJ45760.1 - 2.2e-10 40.7 0.1 3.7e-08 33.4 0.1 2.4 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.26 GAJ45760.1 - 3.9e-07 29.9 0.0 0.017 14.9 0.0 2.6 2 1 0 3 3 3 2 Sigma-54 interaction domain TIP49 PF06068.13 GAJ45760.1 - 1.7e-06 27.5 0.0 9.4e-05 21.8 0.0 2.1 2 0 0 2 2 2 1 TIP49 P-loop domain AAA_16 PF13191.6 GAJ45760.1 - 1.7e-06 28.5 0.5 0.00022 21.6 0.0 2.4 1 1 1 2 2 2 1 AAA ATPase domain AAA_3 PF07726.11 GAJ45760.1 - 1.1e-05 25.3 0.1 0.00088 19.1 0.1 2.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.22 GAJ45760.1 - 1.5e-05 25.3 0.0 2.6e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 RNA helicase AAA_22 PF13401.6 GAJ45760.1 - 2.7e-05 24.5 0.8 0.032 14.5 0.0 2.6 1 1 1 2 2 2 2 AAA domain Sigma54_activ_2 PF14532.6 GAJ45760.1 - 6.6e-05 23.0 0.0 0.00012 22.2 0.0 1.4 1 0 0 1 1 1 1 Sigma-54 interaction domain ResIII PF04851.15 GAJ45760.1 - 7.6e-05 22.8 0.1 0.045 13.8 0.0 2.3 1 1 1 2 2 2 1 Type III restriction enzyme, res subunit DUF815 PF05673.13 GAJ45760.1 - 0.0001 21.5 0.1 0.12 11.5 0.0 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF815) AAA_14 PF13173.6 GAJ45760.1 - 0.00013 22.0 0.0 0.00035 20.6 0.0 1.6 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 GAJ45760.1 - 0.00037 20.4 0.1 0.014 15.4 0.0 2.4 1 1 0 2 2 2 1 NTPase Mg_chelatase PF01078.21 GAJ45760.1 - 0.00084 18.8 3.1 0.16 11.3 0.4 3.0 2 1 0 3 3 3 1 Magnesium chelatase, subunit ChlI NB-ARC PF00931.22 GAJ45760.1 - 0.0013 18.0 0.0 0.0021 17.3 0.0 1.4 1 0 0 1 1 1 1 NB-ARC domain Bac_DnaA PF00308.18 GAJ45760.1 - 0.0018 18.2 0.5 0.056 13.3 0.3 2.7 2 1 0 2 2 2 1 Bacterial dnaA protein AAA_19 PF13245.6 GAJ45760.1 - 0.0028 18.0 0.8 0.43 10.9 0.1 2.4 1 1 1 2 2 2 1 AAA domain Rad17 PF03215.15 GAJ45760.1 - 0.0028 17.6 0.0 0.0052 16.7 0.0 1.4 1 0 0 1 1 1 1 Rad17 P-loop domain TsaE PF02367.17 GAJ45760.1 - 0.0042 17.1 0.0 0.0071 16.3 0.0 1.3 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE IstB_IS21 PF01695.17 GAJ45760.1 - 0.005 16.6 0.2 0.03 14.1 0.2 2.0 1 1 0 1 1 1 1 IstB-like ATP binding protein NACHT PF05729.12 GAJ45760.1 - 0.0072 16.3 0.0 0.022 14.7 0.0 1.9 1 0 0 1 1 1 1 NACHT domain AAA_33 PF13671.6 GAJ45760.1 - 0.015 15.4 0.0 0.026 14.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 GAJ45760.1 - 0.019 14.7 0.2 0.31 10.8 0.2 2.2 1 1 0 1 1 1 0 AAA domain TniB PF05621.11 GAJ45760.1 - 0.019 14.4 0.1 0.29 10.5 0.0 2.2 1 1 1 2 2 2 0 Bacterial TniB protein MCM PF00493.23 GAJ45760.1 - 0.02 14.0 0.1 0.61 9.1 0.1 2.1 1 1 0 1 1 1 0 MCM P-loop domain AAA_PrkA PF08298.11 GAJ45760.1 - 0.023 13.6 0.0 0.041 12.8 0.0 1.3 1 0 0 1 1 1 0 PrkA AAA domain AAA_18 PF13238.6 GAJ45760.1 - 0.036 14.6 0.0 0.062 13.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain Viral_helicase1 PF01443.18 GAJ45760.1 - 0.038 13.7 0.2 0.098 12.4 0.1 1.7 2 1 0 2 2 1 0 Viral (Superfamily 1) RNA helicase ABC_tran PF00005.27 GAJ45760.1 - 0.11 13.0 0.0 0.31 11.5 0.0 1.8 1 0 0 1 1 1 0 ABC transporter Torsin PF06309.11 GAJ45760.1 - 0.12 12.5 0.0 0.19 11.9 0.0 1.3 1 0 0 1 1 1 0 Torsin AAA_11 PF13086.6 GAJ45760.1 - 0.22 11.3 0.0 0.35 10.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 GAJ45760.1 - 0.23 10.7 0.0 0.4 9.9 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AI-2E_transport PF01594.16 GAJ45761.1 - 1.2e-32 113.4 22.7 1.4e-32 113.2 22.7 1.0 1 0 0 1 1 1 1 AI-2E family transporter AI-2E_transport PF01594.16 GAJ45762.1 - 0.00042 19.6 10.9 0.00048 19.4 10.9 1.0 1 0 0 1 1 1 1 AI-2E family transporter CDP-OH_P_transf PF01066.21 GAJ45763.1 - 1.6e-08 35.2 0.2 1.6e-08 35.2 0.2 2.3 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase tRNA_synthFbeta PF17759.1 GAJ45766.1 - 6.5e-34 117.3 0.0 8.6e-34 116.8 0.0 1.2 1 0 0 1 1 1 1 Phenylalanyl tRNA synthetase beta chain CLM domain B5 PF03484.15 GAJ45766.1 - 4.1e-11 43.0 0.0 1.1e-10 41.6 0.0 1.8 2 0 0 2 2 2 1 tRNA synthetase B5 domain B3_4 PF03483.17 GAJ45766.1 - 2.5e-08 33.8 0.0 3.9e-08 33.2 0.0 1.3 1 0 0 1 1 1 1 B3/4 domain FDX-ACB PF03147.14 GAJ45766.1 - 0.00013 22.4 0.0 0.00053 20.4 0.0 2.0 2 0 0 2 2 2 1 Ferredoxin-fold anticodon binding domain tRNA_bind PF01588.20 GAJ45767.1 - 2.7e-15 56.3 0.0 3.9e-15 55.7 0.0 1.3 1 0 0 1 1 1 1 Putative tRNA binding domain B3_4 PF03483.17 GAJ45767.1 - 4.6e-06 26.4 0.0 8.7e-06 25.5 0.0 1.5 1 0 0 1 1 1 1 B3/4 domain DUF1661 PF07877.11 GAJ45768.1 - 1.4 8.6 6.5 4.7 7.0 4.6 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1661) FliG_C PF01706.16 GAJ45769.1 - 0.0013 18.9 0.5 0.056 13.6 0.1 2.2 2 0 0 2 2 2 2 FliG C-terminal domain SPOUT_MTase PF02590.17 GAJ45769.1 - 0.085 12.8 0.4 0.11 12.5 0.4 1.1 1 0 0 1 1 1 0 Predicted SPOUT methyltransferase DHC PF09626.10 GAJ45770.1 - 0.02 15.8 0.9 0.028 15.3 0.9 1.3 1 1 0 1 1 1 0 Dihaem cytochrome c DUF1978 PF09321.10 GAJ45770.1 - 0.027 13.8 3.2 0.073 12.4 3.2 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF1978) DUF3450 PF11932.8 GAJ45770.1 - 0.033 13.5 0.5 0.036 13.4 0.5 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) AviRa PF11599.8 GAJ45770.1 - 0.12 11.8 0.6 0.14 11.6 0.6 1.1 1 0 0 1 1 1 0 RRNA methyltransferase AviRa YtxH PF12732.7 GAJ45770.1 - 0.28 11.7 1.3 0.77 10.3 1.3 1.9 1 1 0 1 1 1 0 YtxH-like protein Nucleoporin_FG2 PF15967.5 GAJ45770.1 - 0.89 8.0 3.0 0.96 7.9 3.0 1.0 1 0 0 1 1 1 0 Nucleoporin FG repeated region Asn_synthase PF00733.21 GAJ45773.1 - 3.3e-90 303.3 0.0 4.1e-90 303.0 0.0 1.1 1 0 0 1 1 1 1 Asparagine synthase GATase_7 PF13537.6 GAJ45773.1 - 2.5e-37 127.5 0.0 4.5e-37 126.7 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 GAJ45773.1 - 3.7e-34 117.8 0.0 1.9e-33 115.5 0.0 2.0 2 0 0 2 2 2 1 Glutamine amidotransferase domain DUF3700 PF12481.8 GAJ45773.1 - 2.8e-06 26.9 0.0 5.4e-06 26.0 0.0 1.4 1 0 0 1 1 1 1 Aluminium induced protein NAD_synthase PF02540.17 GAJ45773.1 - 0.01 15.0 0.0 0.018 14.2 0.0 1.5 1 0 0 1 1 1 0 NAD synthase QueC PF06508.13 GAJ45773.1 - 0.08 12.4 0.1 0.15 11.5 0.1 1.4 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC DDE_3 PF13358.6 GAJ45774.1 - 6e-05 22.8 0.0 6.5e-05 22.7 0.0 1.0 1 0 0 1 1 1 1 DDE superfamily endonuclease Methyltransf_31 PF13847.6 GAJ45775.1 - 3.1e-14 53.0 0.0 9.6e-14 51.4 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.14 GAJ45775.1 - 3.4e-11 43.0 0.0 2.5e-10 40.2 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_25 PF13649.6 GAJ45775.1 - 1.4e-10 41.8 0.0 2.7e-10 40.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.18 GAJ45775.1 - 4.7e-07 29.7 0.0 7.9e-07 29.0 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_15 PF09445.10 GAJ45775.1 - 6.8e-07 29.0 0.0 1.1e-06 28.4 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase PrmA PF06325.13 GAJ45775.1 - 3.2e-06 26.8 0.0 5e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_11 PF08241.12 GAJ45775.1 - 5.3e-06 27.0 0.0 1.6e-05 25.4 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Cons_hypoth95 PF03602.15 GAJ45775.1 - 1.7e-05 24.6 0.0 2.9e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 N6_Mtase PF02384.16 GAJ45775.1 - 8.9e-05 21.9 0.0 0.00013 21.4 0.0 1.1 1 0 0 1 1 1 1 N-6 DNA Methylase Methyltransf_12 PF08242.12 GAJ45775.1 - 0.00015 22.4 0.0 0.00044 20.9 0.0 1.7 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 GAJ45775.1 - 0.00048 20.0 0.0 0.00084 19.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_16 PF10294.9 GAJ45775.1 - 0.002 17.9 0.0 0.0032 17.2 0.0 1.3 1 0 0 1 1 1 1 Lysine methyltransferase Methyltransf_4 PF02390.17 GAJ45775.1 - 0.0035 16.8 0.0 0.0069 15.9 0.0 1.4 1 0 0 1 1 1 1 Putative methyltransferase HTH_Tnp_Tc5 PF03221.16 GAJ45775.1 - 0.012 15.6 0.2 1.5 8.9 0.0 2.6 2 0 0 2 2 2 0 Tc5 transposase DNA-binding domain Methyltransf_18 PF12847.7 GAJ45775.1 - 0.015 15.2 0.0 0.028 14.4 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_2 PF00891.18 GAJ45775.1 - 0.15 11.3 0.0 0.23 10.7 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase domain MetW PF07021.12 GAJ45775.1 - 0.16 11.6 0.0 0.24 11.0 0.0 1.4 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW MarR PF01047.22 GAJ45779.1 - 0.0015 18.5 0.1 0.0061 16.5 0.0 2.0 1 1 1 2 2 2 1 MarR family MarR_2 PF12802.7 GAJ45779.1 - 0.0048 16.7 0.0 0.013 15.3 0.0 1.8 1 0 0 1 1 1 1 MarR family B-block_TFIIIC PF04182.12 GAJ45779.1 - 0.07 13.3 0.1 0.17 12.1 0.1 1.6 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_27 PF13463.6 GAJ45779.1 - 0.085 13.4 0.0 0.16 12.5 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_Tnp_4 PF13613.6 GAJ45781.1 - 3.3e-11 42.7 0.1 4.1e-11 42.4 0.1 1.1 1 0 0 1 1 1 1 Helix-turn-helix of DDE superfamily endonuclease SRP54_N PF02881.19 GAJ45781.1 - 0.044 14.0 0.4 1.9 8.8 1.3 2.5 2 1 0 2 2 2 0 SRP54-type protein, helical bundle domain AMP-binding PF00501.28 GAJ45781.1 - 0.073 11.6 0.0 0.075 11.6 0.0 1.1 1 0 0 1 1 1 0 AMP-binding enzyme TFIIE_beta PF02186.15 GAJ45782.1 - 8.2 6.8 15.3 94 3.4 0.0 7.2 8 0 0 8 8 8 0 TFIIE beta subunit core domain DALR_1 PF05746.15 GAJ45784.1 - 2.8e-20 72.7 0.0 5.7e-20 71.7 0.0 1.5 1 1 0 1 1 1 1 DALR anticodon binding domain tRNA-synt_1f PF01921.18 GAJ45784.1 - 4.4e-06 25.8 0.0 5.8e-06 25.5 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (K) tRNA-synt_1g PF09334.11 GAJ45784.1 - 0.00011 21.1 0.0 0.00016 20.6 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 GAJ45784.1 - 0.00028 20.3 0.1 0.00058 19.3 0.1 1.5 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1 PF00133.22 GAJ45784.1 - 0.062 11.5 0.0 0.071 11.3 0.0 1.1 1 0 0 1 1 1 0 tRNA synthetases class I (I, L, M and V) tRNA-synt_1d PF00750.19 GAJ45784.1 - 0.1 11.6 0.1 0.13 11.1 0.1 1.1 1 0 0 1 1 1 0 tRNA synthetases class I (R) Arg_tRNA_synt_N PF03485.16 GAJ45785.1 - 7.5e-16 58.5 0.0 1.9e-15 57.2 0.0 1.7 1 0 0 1 1 1 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1d PF00750.19 GAJ45785.1 - 7.8e-15 54.7 0.0 1e-14 54.3 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (R) tRNA-synt_1e PF01406.19 GAJ45785.1 - 0.00015 21.2 0.0 0.00019 20.9 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain rve_3 PF13683.6 GAJ45787.1 - 2e-08 33.9 0.0 2.7e-08 33.4 0.0 1.2 1 0 0 1 1 1 1 Integrase core domain rve_2 PF13333.6 GAJ45787.1 - 0.0014 18.8 0.1 0.0021 18.2 0.1 1.3 1 0 0 1 1 1 1 Integrase core domain rve PF00665.26 GAJ45787.1 - 0.004 17.4 0.0 0.0067 16.6 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 GAJ45787.1 - 0.049 13.9 0.2 0.056 13.7 0.2 1.1 1 0 0 1 1 1 0 DDE domain MipZ PF09140.11 GAJ45789.1 - 4.5e-60 203.2 0.0 5.4e-60 202.9 0.0 1.0 1 0 0 1 1 1 1 ATPase MipZ CbiA PF01656.23 GAJ45789.1 - 7.4e-07 29.3 0.0 1.3e-06 28.5 0.0 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 GAJ45789.1 - 1.2e-05 24.9 0.0 2.5e-05 23.9 0.0 1.5 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase AAA_31 PF13614.6 GAJ45789.1 - 4.1e-05 23.6 0.1 0.0011 19.0 0.0 2.4 1 1 1 2 2 2 1 AAA domain VirC1 PF07015.11 GAJ45789.1 - 8.4e-05 22.0 0.0 0.00016 21.0 0.0 1.5 1 1 0 1 1 1 1 VirC1 protein AAA_25 PF13481.6 GAJ45789.1 - 0.0012 18.5 0.0 0.0027 17.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_24 PF13479.6 GAJ45789.1 - 0.004 16.9 0.0 0.0069 16.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain Glyco_transf_34 PF05637.12 GAJ45789.1 - 0.078 12.7 0.0 0.14 11.9 0.0 1.4 1 0 0 1 1 1 0 galactosyl transferase GMA12/MNN10 family ArsA_ATPase PF02374.15 GAJ45789.1 - 0.14 11.3 0.1 1.1 8.4 0.0 2.1 2 0 0 2 2 2 0 Anion-transporting ATPase BPD_transp_1 PF00528.22 GAJ45790.1 - 1.2e-12 48.0 20.0 1.6e-12 47.6 20.0 1.2 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component DUF1218 PF06749.12 GAJ45790.1 - 1.4 9.5 6.4 0.51 10.9 3.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1218) SR-25 PF10500.9 GAJ45791.1 - 0.004 16.8 4.7 0.0046 16.6 4.7 1.1 1 0 0 1 1 1 1 Nuclear RNA-splicing-associated protein AP3D1 PF06375.11 GAJ45791.1 - 0.0087 16.3 2.9 0.01 16.1 2.9 1.2 1 0 0 1 1 1 1 AP-3 complex subunit delta-1 CCDC106 PF15794.5 GAJ45791.1 - 0.16 11.7 2.0 0.2 11.3 2.0 1.1 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 106 SRP-alpha_N PF04086.13 GAJ45791.1 - 6.5 6.6 11.0 8 6.3 11.0 1.1 1 0 0 1 1 1 0 Signal recognition particle, alpha subunit, N-terminal XPC-binding PF09280.11 GAJ45793.1 - 0.06 13.1 0.0 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 XPC-binding domain HTH_40 PF14493.6 GAJ45793.1 - 3.4 8.2 7.0 18 5.8 0.8 3.3 1 1 1 3 3 3 0 Helix-turn-helix domain Snf7 PF03357.21 GAJ45793.1 - 6.3 6.4 10.2 0.83 9.2 0.4 2.7 3 0 0 3 3 3 0 Snf7 NADH_B2 PF14813.6 GAJ45795.1 - 0.15 11.8 0.2 0.37 10.6 0.2 1.6 1 0 0 1 1 1 0 NADH dehydrogenase 1 beta subcomplex subunit 2 TMEM223 PF14640.6 GAJ45795.1 - 0.3 11.3 5.5 8.1 6.6 0.6 2.7 2 1 0 2 2 2 0 Transmembrane protein 223 Ycf4 PF02392.16 GAJ45795.1 - 8.7 5.9 7.5 0.36 10.4 0.5 2.2 2 1 1 3 3 3 0 Ycf4 FTSW_RODA_SPOVE PF01098.19 GAJ45797.1 - 3.8e-31 108.4 15.0 4.8e-31 108.0 15.0 1.1 1 0 0 1 1 1 1 Cell cycle protein DUF4262 PF14081.6 GAJ45797.1 - 0.048 13.9 0.0 0.076 13.2 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4262) TMEM192 PF14802.6 GAJ45797.1 - 0.087 11.9 2.1 0.2 10.7 2.1 1.5 1 0 0 1 1 1 0 TMEM192 family Mur_ligase_M PF08245.12 GAJ45798.1 - 2e-18 67.1 0.0 3e-18 66.5 0.0 1.3 1 0 0 1 1 1 1 Mur ligase middle domain PGK PF00162.19 GAJ45798.1 - 0.023 13.6 0.0 0.037 13.0 0.0 1.2 1 0 0 1 1 1 0 Phosphoglycerate kinase Ribosomal_L21p PF00829.21 GAJ45799.1 - 1.6e-21 76.4 5.8 1.8e-20 73.1 5.8 1.9 1 1 0 1 1 1 1 Ribosomal prokaryotic L21 protein Ribosomal_L27 PF01016.19 GAJ45800.1 - 6.3e-29 99.8 3.3 6.8e-29 99.7 3.3 1.0 1 0 0 1 1 1 1 Ribosomal L27 protein HAD_2 PF13419.6 GAJ45801.1 - 9.7e-12 45.3 0.0 1.9e-11 44.4 0.0 1.5 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 GAJ45801.1 - 2e-05 25.0 0.0 2.3e-05 24.8 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 GAJ45801.1 - 0.078 13.1 0.0 0.13 12.3 0.0 1.3 1 0 0 1 1 1 0 HAD-hyrolase-like OGG_N PF07934.12 GAJ45801.1 - 0.11 12.6 0.1 0.2 11.7 0.1 1.5 1 0 0 1 1 1 0 8-oxoguanine DNA glycosylase, N-terminal domain DDE_Tnp_IS1 PF03400.13 GAJ45802.1 - 4.3e-07 30.3 0.0 5.5e-07 30.0 0.0 1.0 1 0 0 1 1 1 1 IS1 transposase Apolipoprotein PF01442.18 GAJ45804.1 - 0.0052 16.7 0.5 0.008 16.1 0.5 1.2 1 0 0 1 1 1 1 Apolipoprotein A1/A4/E domain vATP-synt_E PF01991.18 GAJ45804.1 - 0.022 14.2 1.9 0.91 8.9 1.0 2.3 2 0 0 2 2 2 0 ATP synthase (E/31 kDa) subunit Apt1 PF10351.9 GAJ45804.1 - 0.026 13.4 5.6 0.035 13.0 5.6 1.1 1 0 0 1 1 1 0 Golgi-body localisation protein domain Colicin PF01024.19 GAJ45804.1 - 0.15 12.0 0.6 0.47 10.3 0.3 1.8 1 1 1 2 2 2 0 Colicin pore forming domain YtxH PF12732.7 GAJ45804.1 - 0.17 12.4 1.3 0.31 11.6 0.6 1.9 2 1 0 2 2 2 0 YtxH-like protein Response_reg PF00072.24 GAJ45805.1 - 6.6e-26 90.7 0.1 1.2e-25 89.8 0.1 1.5 1 0 0 1 1 1 1 Response regulator receiver domain Sigma54_activat PF00158.26 GAJ45805.1 - 7e-18 64.9 0.1 1.4e-17 64.0 0.1 1.4 1 0 0 1 1 1 1 Sigma-54 interaction domain Sigma54_activ_2 PF14532.6 GAJ45805.1 - 1.4e-07 31.7 0.0 3.1e-07 30.6 0.0 1.6 1 0 0 1 1 1 1 Sigma-54 interaction domain HTH_8 PF02954.19 GAJ45805.1 - 0.0002 21.1 0.1 0.00066 19.4 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory protein, Fis family ABC_tran PF00005.27 GAJ45805.1 - 0.0003 21.3 0.4 0.00088 19.8 0.1 1.9 2 0 0 2 2 2 1 ABC transporter AAA_5 PF07728.14 GAJ45805.1 - 0.00057 19.9 0.2 0.0013 18.7 0.2 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Roc PF08477.13 GAJ45805.1 - 0.0024 18.1 0.3 0.048 13.9 0.0 2.7 3 0 0 3 3 2 1 Ras of Complex, Roc, domain of DAPkinase AAA_7 PF12775.7 GAJ45805.1 - 0.0024 17.4 0.0 0.0051 16.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing dynein motor region SRP54 PF00448.22 GAJ45805.1 - 0.0033 17.1 0.1 0.14 11.7 0.0 2.3 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain FleQ PF06490.11 GAJ45805.1 - 0.0039 17.6 0.0 0.014 15.8 0.0 2.0 1 0 0 1 1 1 1 Flagellar regulatory protein FleQ AAA_16 PF13191.6 GAJ45805.1 - 0.0065 16.9 0.0 0.013 15.9 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_2 PF07724.14 GAJ45805.1 - 0.007 16.5 0.1 0.013 15.6 0.1 1.4 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) DUF815 PF05673.13 GAJ45805.1 - 0.0097 15.1 0.2 0.032 13.4 0.2 1.8 1 1 1 2 2 2 1 Protein of unknown function (DUF815) AAA PF00004.29 GAJ45805.1 - 0.01 16.2 0.0 0.034 14.6 0.0 2.0 2 0 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 GAJ45805.1 - 0.013 15.2 0.0 0.024 14.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 GAJ45805.1 - 0.032 14.0 0.4 0.062 13.0 0.4 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.6 GAJ45805.1 - 0.036 13.8 0.0 0.06 13.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 GAJ45805.1 - 0.048 13.6 0.0 0.099 12.5 0.0 1.5 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_23 PF13476.6 GAJ45805.1 - 0.067 13.7 0.0 0.21 12.1 0.0 1.8 1 0 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.25 GAJ45805.1 - 0.076 12.6 0.0 0.12 12.0 0.0 1.5 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain B12-binding PF02310.19 GAJ45805.1 - 0.083 12.9 0.0 0.25 11.4 0.0 1.7 2 0 0 2 2 2 0 B12 binding domain MCM PF00493.23 GAJ45805.1 - 0.085 11.9 0.1 0.17 11.0 0.1 1.4 1 0 0 1 1 1 0 MCM P-loop domain HTH_1 PF00126.27 GAJ45805.1 - 0.096 12.7 0.0 0.24 11.4 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family IstB_IS21 PF01695.17 GAJ45805.1 - 0.11 12.2 0.0 0.2 11.4 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein CbiA PF01656.23 GAJ45805.1 - 0.12 12.5 0.0 0.26 11.4 0.0 1.7 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_19 PF13245.6 GAJ45805.1 - 0.12 12.7 0.0 0.27 11.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain FabA PF07977.13 GAJ45806.1 - 8.9e-36 122.6 0.2 1e-35 122.3 0.2 1.0 1 0 0 1 1 1 1 FabA-like domain MaoC_dehydratas PF01575.19 GAJ45806.1 - 0.00093 18.8 0.0 0.0014 18.2 0.0 1.3 1 0 0 1 1 1 1 MaoC like domain 4HBT PF03061.22 GAJ45806.1 - 0.0063 16.8 0.0 0.01 16.2 0.0 1.4 1 0 0 1 1 1 1 Thioesterase superfamily DUF5599 PF18141.1 GAJ45806.1 - 0.014 15.6 0.0 0.021 15.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5599) DUF3445 PF11927.8 GAJ45806.1 - 0.074 12.7 0.0 0.097 12.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3445) Hexapep PF00132.24 GAJ45807.1 - 3.8e-25 86.6 17.3 4.3e-07 29.4 0.2 5.5 5 0 0 5 5 5 5 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 GAJ45807.1 - 9.5e-08 31.7 20.7 0.016 14.9 1.5 5.6 3 2 2 5 5 5 4 Hexapeptide repeat of succinyl-transferase LpxD PF04613.14 GAJ45807.1 - 1.7e-06 27.7 0.0 2.6e-06 27.1 0.0 1.3 1 0 0 1 1 1 1 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD OmpH PF03938.14 GAJ45808.1 - 3.3e-09 37.2 0.1 3.3e-09 37.2 0.1 1.4 2 0 0 2 2 2 1 Outer membrane protein (OmpH-like) Tropomyosin PF00261.20 GAJ45808.1 - 0.0061 16.0 3.0 0.013 14.9 3.0 1.5 1 0 0 1 1 1 1 Tropomyosin Pyr_redox PF00070.27 GAJ45808.1 - 0.062 13.9 0.0 0.12 12.9 0.0 1.6 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase XhlA PF10779.9 GAJ45808.1 - 0.13 12.5 2.1 0.5 10.6 1.1 2.3 2 0 0 2 2 2 0 Haemolysin XhlA GTP-bdg_M PF16360.5 GAJ45808.1 - 0.24 12.0 3.4 0.73 10.5 1.9 2.3 2 0 0 2 2 2 0 GTP-binding GTPase Middle Region rve_2 PF13333.6 GAJ45810.1 - 0.00011 22.2 0.1 0.00016 21.8 0.1 1.2 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.6 GAJ45810.1 - 0.0055 16.5 0.0 0.0074 16.0 0.0 1.2 1 0 0 1 1 1 1 Integrase core domain ABC_tran PF00005.27 GAJ45812.1 - 1.2e-28 100.3 0.0 2e-28 99.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.23 GAJ45812.1 - 3.7e-16 59.6 5.4 6e-16 58.9 5.4 1.3 1 0 0 1 1 1 1 ABC transporter transmembrane region SMC_N PF02463.19 GAJ45812.1 - 1.7e-06 27.7 0.0 7.7e-06 25.5 0.0 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 GAJ45812.1 - 0.018 15.4 0.0 0.035 14.5 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain PsbX PF06596.11 GAJ45812.1 - 0.1 12.6 0.2 0.56 10.2 0.2 2.4 1 0 0 1 1 1 0 Photosystem II reaction centre X protein (PsbX) MMR_HSR1 PF01926.23 GAJ45812.1 - 0.15 12.2 0.1 0.51 10.4 0.0 1.9 3 0 0 3 3 3 0 50S ribosome-binding GTPase Peptidase_S78_2 PF14550.6 GAJ45812.1 - 0.18 11.9 0.0 0.32 11.1 0.0 1.3 1 0 0 1 1 1 0 Putative phage serine protease XkdF CTP_transf_3 PF02348.19 GAJ45813.1 - 1.2e-22 80.9 0.0 1.7e-22 80.4 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase NTP_transf_3 PF12804.7 GAJ45813.1 - 8.7e-06 26.2 0.0 1.1e-05 25.8 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain tRNA-synt_2b PF00587.25 GAJ45814.1 - 5.3e-35 121.0 0.0 9.5e-35 120.2 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 GAJ45814.1 - 6.7e-11 42.2 0.0 1.4e-10 41.2 0.0 1.5 1 0 0 1 1 1 1 Anticodon binding domain AAA_35 PF14516.6 GAJ45814.1 - 0.084 11.7 0.1 0.14 11.0 0.1 1.3 1 0 0 1 1 1 0 AAA-like domain Mur_ligase_M PF08245.12 GAJ45815.1 - 5.3e-29 101.6 0.0 1.3e-28 100.3 0.0 1.7 2 0 0 2 2 2 1 Mur ligase middle domain Mur_ligase PF01225.25 GAJ45815.1 - 5.1e-09 36.3 0.0 1.3e-08 35.0 0.0 1.7 1 0 0 1 1 1 1 Mur ligase family, catalytic domain Mur_ligase_C PF02875.21 GAJ45815.1 - 8.9e-09 35.5 0.0 2.5e-08 34.1 0.0 1.8 1 0 0 1 1 1 1 Mur ligase family, glutamate ligase domain IF3_N PF05198.16 GAJ45816.1 - 4.8e-28 97.2 1.1 3.8e-27 94.3 0.0 2.3 2 0 0 2 2 2 1 Translation initiation factor IF-3, N-terminal domain IF3_C PF00707.22 GAJ45816.1 - 7.8e-19 67.4 0.3 1.4e-18 66.6 0.3 1.4 1 0 0 1 1 1 1 Translation initiation factor IF-3, C-terminal domain tRNA-synt_2b PF00587.25 GAJ45817.1 - 6.5e-39 133.7 0.0 1.1e-38 133.0 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 GAJ45817.1 - 3.5e-12 46.3 0.3 6.7e-12 45.4 0.3 1.5 1 0 0 1 1 1 1 Anticodon binding domain tRNA_SAD PF07973.14 GAJ45817.1 - 1.4e-11 44.2 0.0 3.8e-11 42.9 0.0 1.8 2 0 0 2 2 2 1 Threonyl and Alanyl tRNA synthetase second additional domain AOX PF01786.17 GAJ45818.1 - 1.6e-63 214.2 0.0 1.9e-63 213.9 0.0 1.0 1 0 0 1 1 1 1 Alternative oxidase HTH_25 PF13413.6 GAJ45818.1 - 0.13 12.1 0.1 0.24 11.3 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain ATP-synt_ab PF00006.25 GAJ45819.1 - 2.9e-61 206.8 0.0 4e-61 206.4 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 GAJ45819.1 - 4.8e-19 68.6 0.9 1.1e-18 67.5 0.9 1.7 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain ATPase PF06745.13 GAJ45819.1 - 0.019 14.3 0.4 0.08 12.3 0.1 2.1 2 0 0 2 2 2 0 KaiC ATPase_2 PF01637.18 GAJ45819.1 - 0.037 13.9 0.0 0.067 13.1 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea NACHT PF05729.12 GAJ45819.1 - 0.059 13.3 0.0 0.14 12.1 0.0 1.6 1 0 0 1 1 1 0 NACHT domain NB-ARC PF00931.22 GAJ45819.1 - 0.095 11.9 0.8 0.16 11.1 0.3 1.5 2 0 0 2 2 2 0 NB-ARC domain AAA_25 PF13481.6 GAJ45819.1 - 0.11 12.0 0.1 1.2 8.7 0.2 2.3 2 1 0 2 2 2 0 AAA domain AAA_19 PF13245.6 GAJ45819.1 - 0.14 12.5 0.2 0.29 11.4 0.2 1.5 1 0 0 1 1 1 0 AAA domain ATP-synt_DE_N PF02823.16 GAJ45820.1 - 1.7e-07 31.0 0.0 2.2e-07 30.7 0.0 1.2 1 0 0 1 1 1 1 ATP synthase, Delta/Epsilon chain, beta-sandwich domain Ribonucleas_3_3 PF14622.6 GAJ45821.1 - 1.4e-17 64.0 0.0 2.1e-17 63.5 0.0 1.3 1 0 0 1 1 1 1 Ribonuclease-III-like dsrm PF00035.26 GAJ45821.1 - 7.3e-17 61.8 0.6 1.4e-16 60.9 0.1 1.7 2 0 0 2 2 2 1 Double-stranded RNA binding motif Ribonuclease_3 PF00636.26 GAJ45821.1 - 6.8e-14 52.4 0.0 3.3e-13 50.1 0.0 2.2 2 1 0 2 2 2 1 Ribonuclease III domain DND1_DSRM PF14709.7 GAJ45821.1 - 1.8e-08 34.5 2.5 1.4e-07 31.7 2.0 2.4 2 1 0 2 2 2 1 double strand RNA binding domain from DEAD END PROTEIN 1 MMR_HSR1 PF01926.23 GAJ45822.1 - 7.6e-22 77.6 0.2 1.4e-21 76.7 0.2 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 GAJ45822.1 - 1.5e-11 44.1 0.0 2.2e-11 43.5 0.0 1.2 1 0 0 1 1 1 1 Ferrous iron transport protein B RsgA_GTPase PF03193.16 GAJ45822.1 - 8.5e-10 38.8 0.1 0.00026 20.9 0.0 2.3 2 0 0 2 2 2 2 RsgA GTPase Dynamin_N PF00350.23 GAJ45822.1 - 2e-09 37.7 1.3 4.4e-05 23.6 0.1 2.4 1 1 1 2 2 2 2 Dynamin family GTP_EFTU PF00009.27 GAJ45822.1 - 2.4e-08 33.8 0.0 3.4e-06 26.8 0.0 2.3 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain KH_2 PF07650.17 GAJ45822.1 - 2e-07 30.7 0.7 1.8e-06 27.7 0.1 2.6 3 0 0 3 3 3 1 KH domain cobW PF02492.19 GAJ45822.1 - 1.3e-05 24.9 0.2 0.0015 18.2 0.0 2.2 1 1 1 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AIG1 PF04548.16 GAJ45822.1 - 0.0011 18.3 0.1 0.0018 17.6 0.1 1.3 1 0 0 1 1 1 1 AIG1 family SRPRB PF09439.10 GAJ45822.1 - 0.0036 16.7 0.1 0.0065 15.9 0.1 1.4 1 1 0 1 1 1 1 Signal recognition particle receptor beta subunit Roc PF08477.13 GAJ45822.1 - 0.034 14.3 2.3 0.048 13.9 0.0 2.3 2 1 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase AAA_22 PF13401.6 GAJ45822.1 - 0.054 13.8 0.0 0.12 12.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 GAJ45822.1 - 0.1 13.1 0.1 0.23 11.9 0.1 1.7 1 1 0 1 1 1 0 ABC transporter Acyltransferase PF01553.21 GAJ45823.1 - 3.9e-17 62.1 0.1 5.9e-17 61.5 0.1 1.3 1 0 0 1 1 1 1 Acyltransferase DUF3461 PF11944.8 GAJ45824.1 - 0.078 13.1 0.0 0.089 12.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3461) Dus PF01207.17 GAJ45825.1 - 3.4e-88 295.7 0.0 4.1e-88 295.4 0.0 1.0 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) HATPase_c PF02518.26 GAJ45826.1 - 3.6e-15 56.5 0.0 6.9e-15 55.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 GAJ45826.1 - 2.2e-10 40.4 0.3 2.9e-09 36.8 0.0 3.0 2 1 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.6 GAJ45826.1 - 0.00013 21.8 0.0 0.00035 20.4 0.0 1.7 1 0 0 1 1 1 1 GHKL domain HAMP PF00672.25 GAJ45826.1 - 0.012 16.0 2.5 0.015 15.7 0.3 2.4 2 1 0 2 2 2 0 HAMP domain ER PF01133.17 GAJ45826.1 - 0.057 13.4 0.5 0.17 11.9 0.5 1.8 1 0 0 1 1 1 0 Enhancer of rudimentary Sigma70_r1_1 PF03979.14 GAJ45826.1 - 0.13 12.4 1.2 1.4 9.1 0.3 2.6 2 0 0 2 2 2 0 Sigma-70 factor, region 1.1 DUF1129 PF06570.11 GAJ45826.1 - 0.14 11.6 2.7 0.18 11.3 0.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1129) T_Ag_DNA_bind PF02217.16 GAJ45826.1 - 0.39 11.3 3.1 2 9.0 0.4 3.0 2 1 0 2 2 2 0 Origin of replication binding protein DHHC PF01529.20 GAJ45826.1 - 0.8 9.8 4.7 1.8 8.7 0.5 2.5 2 0 0 2 2 2 0 DHHC palmitoyltransferase HTH_28 PF13518.6 GAJ45828.1 - 0.025 14.7 0.0 0.03 14.4 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain Terminase_5 PF06056.12 GAJ45828.1 - 0.027 14.3 0.1 0.046 13.6 0.1 1.6 1 1 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) HTH_psq PF05225.16 GAJ45828.1 - 0.03 14.1 0.0 0.038 13.7 0.0 1.2 1 0 0 1 1 1 0 helix-turn-helix, Psq domain HTH_23 PF13384.6 GAJ45828.1 - 0.078 12.8 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain BrkDBD PF09607.10 GAJ45828.1 - 0.13 12.1 0.1 0.17 11.7 0.1 1.3 1 0 0 1 1 1 0 Brinker DNA-binding domain Carboxyl_trans PF01039.22 GAJ45829.1 - 8.1e-16 57.7 0.0 3.1e-15 55.8 0.0 1.7 2 0 0 2 2 2 1 Carboxyl transferase domain zf-ACC PF17848.1 GAJ45829.1 - 2.5e-10 40.2 2.7 5.8e-10 39.1 2.7 1.7 1 0 0 1 1 1 1 Acetyl-coA carboxylase zinc finger domain zf-UBP PF02148.19 GAJ45829.1 - 0.08 13.3 1.8 0.14 12.5 1.8 1.3 1 0 0 1 1 1 0 Zn-finger in ubiquitin-hydrolases and other protein FUSC-like PF12805.7 GAJ45830.1 - 0.77 8.8 2.2 0.62 9.1 0.2 2.0 2 2 0 2 2 2 0 FUSC-like inner membrane protein yccS Noelin-1 PF12308.8 GAJ45830.1 - 9.1 6.3 7.6 5.5 7.0 0.6 2.9 3 0 0 3 3 3 0 Neurogenesis glycoprotein BacA PF02673.18 GAJ45831.1 - 3.5e-37 128.5 13.9 3.9e-37 128.4 13.9 1.0 1 0 0 1 1 1 1 Bacitracin resistance protein BacA LapA_dom PF06305.11 GAJ45831.1 - 0.73 9.7 0.1 0.73 9.7 0.1 3.3 4 0 0 4 4 4 0 Lipopolysaccharide assembly protein A domain BPL_LplA_LipB PF03099.19 GAJ45832.1 - 0.052 13.5 0.0 0.071 13.0 0.0 1.2 1 0 0 1 1 1 0 Biotin/lipoate A/B protein ligase family DDE_3 PF13358.6 GAJ45834.1 - 1.8e-08 34.3 0.0 1.8e-08 34.3 0.0 1.0 1 0 0 1 1 1 1 DDE superfamily endonuclease DUF4168 PF13767.6 GAJ45835.1 - 0.021 16.0 0.7 0.03 15.5 0.7 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4168) Beta-lactamase PF00144.24 GAJ45838.1 - 1.9e-14 53.6 0.0 2.4e-14 53.3 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase ODV-E18 PF10717.9 GAJ45839.1 - 0.095 12.6 0.1 0.097 12.6 0.1 1.1 1 0 0 1 1 1 0 Occlusion-derived virus envelope protein ODV-E18 DDE_3 PF13358.6 GAJ45840.1 - 8.5e-16 58.0 0.0 8.9e-16 58.0 0.0 1.0 1 0 0 1 1 1 1 DDE superfamily endonuclease Sigma70_r3 PF04539.16 GAJ45841.1 - 2e-23 82.3 2.9 3.1e-23 81.7 0.1 2.9 3 0 0 3 3 3 1 Sigma-70 region 3 Sigma70_r2 PF04542.14 GAJ45841.1 - 8.4e-22 76.7 0.5 1.6e-21 75.9 0.5 1.5 1 0 0 1 1 1 1 Sigma-70 region 2 Sigma70_r4 PF04545.16 GAJ45841.1 - 2.3e-16 59.0 3.4 2.3e-16 59.0 3.4 3.4 3 0 0 3 3 3 1 Sigma-70, region 4 Sigma70_r1_2 PF00140.20 GAJ45841.1 - 5.2e-13 48.8 7.0 7.9e-13 48.2 0.0 3.7 3 0 0 3 3 3 1 Sigma-70 factor, region 1.2 Sigma70_ner PF04546.13 GAJ45841.1 - 7.8e-10 39.0 14.4 1e-08 35.3 11.0 3.3 2 1 0 2 2 2 1 Sigma-70, non-essential region Sigma70_r1_1 PF03979.14 GAJ45841.1 - 0.0064 16.5 1.7 0.0064 16.5 1.7 3.3 5 0 0 5 5 5 1 Sigma-70 factor, region 1.1 HTH_25 PF13413.6 GAJ45841.1 - 0.057 13.3 2.1 49 3.9 0.1 3.9 3 0 0 3 3 3 0 Helix-turn-helix domain zf-CHC2 PF01807.20 GAJ45842.1 - 1.8e-34 117.5 0.1 3.4e-34 116.6 0.1 1.5 1 0 0 1 1 1 1 CHC2 zinc finger Toprim_N PF08275.11 GAJ45842.1 - 6.8e-29 100.5 0.2 1.4e-28 99.5 0.2 1.5 1 0 0 1 1 1 1 DNA primase catalytic core, N-terminal domain Toprim_2 PF13155.6 GAJ45842.1 - 2.5e-08 34.3 0.0 9.3e-08 32.4 0.0 2.0 2 0 0 2 2 2 1 Toprim-like Toprim_4 PF13662.6 GAJ45842.1 - 8.4e-08 32.6 0.0 2.1e-07 31.3 0.0 1.7 1 0 0 1 1 1 1 Toprim domain Toprim_3 PF13362.6 GAJ45842.1 - 0.002 18.5 0.0 0.013 15.8 0.0 2.1 2 0 0 2 2 2 1 Toprim domain Toprim PF01751.22 GAJ45842.1 - 0.079 13.2 0.0 0.27 11.5 0.0 1.9 2 0 0 2 2 2 0 Toprim domain Guanylate_kin PF00625.21 GAJ45844.1 - 7.9e-34 116.9 0.0 9.3e-34 116.7 0.0 1.0 1 0 0 1 1 1 1 Guanylate kinase ABC_tran PF00005.27 GAJ45844.1 - 0.00041 20.9 0.0 0.00061 20.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA PF00004.29 GAJ45844.1 - 0.0019 18.6 0.0 0.0029 18.0 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 GAJ45844.1 - 0.0024 18.4 0.0 0.005 17.4 0.0 1.5 1 1 0 1 1 1 1 AAA domain KAP_NTPase PF07693.14 GAJ45844.1 - 0.0046 16.2 0.0 0.0046 16.2 0.0 1.1 1 0 0 1 1 1 1 KAP family P-loop domain AAA_16 PF13191.6 GAJ45844.1 - 0.0059 17.0 0.1 0.0069 16.8 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain TsaE PF02367.17 GAJ45844.1 - 0.012 15.6 0.0 0.097 12.7 0.0 2.1 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_30 PF13604.6 GAJ45844.1 - 0.013 15.3 0.0 0.016 14.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 GAJ45844.1 - 0.013 15.8 0.0 0.018 15.3 0.0 1.6 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 GAJ45844.1 - 0.023 15.1 0.0 0.05 14.0 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_19 PF13245.6 GAJ45844.1 - 0.027 14.8 0.0 0.049 14.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 GAJ45844.1 - 0.14 12.0 0.1 0.24 11.3 0.1 1.3 1 0 0 1 1 1 0 RsgA GTPase NTPase_1 PF03266.15 GAJ45844.1 - 0.16 11.9 0.0 0.32 10.9 0.0 1.6 1 1 0 1 1 1 0 NTPase Herpes_UL1 PF05259.11 GAJ45845.1 - 0.12 12.5 0.1 0.63 10.1 0.0 2.0 2 0 0 2 2 2 0 Herpesvirus glycoprotein L Semialdhyde_dhC PF02774.18 GAJ45846.1 - 1.6e-34 119.6 0.0 2.1e-34 119.2 0.0 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain Semialdhyde_dh PF01118.24 GAJ45846.1 - 2.2e-18 66.8 0.0 4.8e-18 65.8 0.0 1.6 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Gp_dh_C PF02800.20 GAJ45846.1 - 0.067 12.8 0.0 0.18 11.4 0.0 1.7 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.20 GAJ45846.1 - 0.069 13.3 0.0 0.15 12.2 0.0 1.6 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus SurA_N_3 PF13624.6 GAJ45847.1 - 6.4e-17 61.8 0.4 1.3e-16 60.8 0.4 1.6 1 0 0 1 1 1 1 SurA N-terminal domain SurA_N_2 PF13623.6 GAJ45847.1 - 3.7e-11 43.1 0.1 3.7e-11 43.1 0.1 2.1 2 0 0 2 2 2 1 SurA N-terminal domain Rotamase_2 PF13145.6 GAJ45847.1 - 9e-07 29.7 10.8 0.00017 22.4 3.1 2.6 2 0 0 2 2 2 2 PPIC-type PPIASE domain 2_5_RNA_ligase2 PF13563.6 GAJ45847.1 - 0.04 13.8 0.0 0.096 12.6 0.0 1.6 1 0 0 1 1 1 0 2'-5' RNA ligase superfamily GerE PF00196.19 GAJ45847.1 - 0.07 12.7 0.0 0.14 11.7 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family 4F5 PF04419.14 GAJ45847.1 - 2.5 9.0 5.0 6.6 7.7 5.0 1.7 1 0 0 1 1 1 0 4F5 protein family RsfS PF02410.15 GAJ45848.1 - 1.9e-22 79.6 0.4 2.2e-22 79.3 0.4 1.1 1 0 0 1 1 1 1 Ribosomal silencing factor during starvation TrkA_N PF02254.18 GAJ45849.1 - 2.3e-21 76.2 0.0 2.6e-12 47.0 0.1 2.5 2 0 0 2 2 2 2 TrkA-N domain TrkA_C PF02080.21 GAJ45849.1 - 3.1e-07 30.1 0.0 0.00046 20.0 0.0 2.9 3 0 0 3 3 3 2 TrkA-C domain Thioredoxin_13 PF18401.1 GAJ45849.1 - 0.013 15.4 0.0 0.046 13.6 0.0 1.9 1 0 0 1 1 1 0 Thioredoxin-like domain Peptidase_M48 PF01435.18 GAJ45850.1 - 4.9e-21 75.4 0.0 8.4e-21 74.6 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M48 TPR_2 PF07719.17 GAJ45850.1 - 2.6e-06 27.1 1.6 0.24 11.6 0.0 4.6 3 1 1 4 4 4 2 Tetratricopeptide repeat TPR_19 PF14559.6 GAJ45850.1 - 0.00017 22.0 0.6 0.068 13.7 0.1 3.4 2 1 1 3 3 3 1 Tetratricopeptide repeat TPR_16 PF13432.6 GAJ45850.1 - 0.0019 18.8 0.2 0.072 13.8 0.0 3.1 4 1 0 4 4 2 1 Tetratricopeptide repeat TPR_12 PF13424.6 GAJ45850.1 - 0.002 18.4 0.8 0.048 14.0 0.1 2.7 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_MalT PF17874.1 GAJ45850.1 - 0.0021 17.5 0.7 1.4 8.3 0.1 2.4 2 0 0 2 2 2 2 MalT-like TPR region TPR_15 PF13429.6 GAJ45850.1 - 0.0033 16.7 0.1 0.019 14.2 0.0 2.1 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_14 PF13428.6 GAJ45850.1 - 0.0043 17.7 0.1 1.7 9.7 0.0 3.1 2 1 1 3 3 2 1 Tetratricopeptide repeat TPR_1 PF00515.28 GAJ45850.1 - 0.0087 15.8 3.0 2.9 7.8 0.0 4.3 3 1 1 4 4 4 1 Tetratricopeptide repeat TPR_8 PF13181.6 GAJ45850.1 - 0.013 15.6 1.1 1.3 9.4 0.0 3.7 3 1 1 4 4 4 0 Tetratricopeptide repeat NARP1 PF12569.8 GAJ45850.1 - 0.035 13.0 0.1 6.4 5.6 0.0 2.1 2 0 0 2 2 2 0 NMDA receptor-regulated protein 1 ANAPC3 PF12895.7 GAJ45850.1 - 0.16 12.2 0.0 0.56 10.5 0.0 1.9 1 0 0 1 1 1 0 Anaphase-promoting complex, cyclosome, subunit 3 TPR_11 PF13414.6 GAJ45850.1 - 0.17 11.6 0.0 27 4.6 0.0 3.1 3 0 0 3 3 3 0 TPR repeat EamA PF00892.20 GAJ45851.1 - 1.3e-05 25.4 3.8 1.3e-05 25.4 3.8 1.0 1 0 0 1 1 1 1 EamA-like transporter family MerC PF03203.14 GAJ45851.1 - 0.0057 17.1 3.5 0.0059 17.0 3.5 1.1 1 0 0 1 1 1 1 MerC mercury resistance protein EamA PF00892.20 GAJ45852.1 - 4.4e-06 26.9 20.7 0.00088 19.5 14.9 2.7 2 1 0 2 2 2 2 EamA-like transporter family Ribosomal_L9_C PF03948.14 GAJ45853.1 - 2.9e-15 56.5 4.4 3.6e-15 56.2 0.3 2.9 3 1 0 3 3 3 1 Ribosomal protein L9, C-terminal domain Ribosomal_L9_N PF01281.19 GAJ45853.1 - 7e-15 54.3 0.1 1.2e-14 53.5 0.1 1.4 1 0 0 1 1 1 1 Ribosomal protein L9, N-terminal domain YbhQ PF11076.8 GAJ45854.1 - 0.16 12.0 4.3 0.11 12.6 2.6 1.6 1 1 0 1 1 1 0 Putative inner membrane protein YbhQ Polysacc_synt_C PF14667.6 GAJ45854.1 - 2.3 8.3 22.6 2.9 7.9 9.0 3.6 1 1 2 3 3 3 0 Polysaccharide biosynthesis C-terminal domain Ribosomal_S18 PF01084.20 GAJ45855.1 - 1.5e-10 41.1 0.8 0.00046 20.4 0.0 2.2 2 0 0 2 2 2 2 Ribosomal protein S18 Ribosomal_S6 PF01250.17 GAJ45856.1 - 3.8e-18 65.5 0.0 6.1e-18 64.9 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein S6 ParBc PF02195.18 GAJ45857.1 - 2.3e-25 88.7 0.3 5.3e-25 87.5 0.0 1.8 2 0 0 2 2 2 1 ParB-like nuclease domain HTH_ParB PF17762.1 GAJ45857.1 - 4.3e-12 45.6 0.4 4.3e-12 45.6 0.4 2.6 3 0 0 3 3 3 1 HTH domain found in ParB protein HTH_3 PF01381.22 GAJ45857.1 - 0.0049 16.9 0.1 0.049 13.7 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix SoPB_HTH PF18090.1 GAJ45857.1 - 0.16 12.1 0.0 0.31 11.2 0.0 1.4 1 0 0 1 1 1 0 Centromere-binding protein HTH domain Hydantoinase_B PF02538.14 GAJ45857.1 - 0.23 9.8 0.0 0.33 9.3 0.0 1.1 1 0 0 1 1 1 0 Hydantoinase B/oxoprolinase Maf PF02545.14 GAJ45858.1 - 5.9e-05 23.0 0.0 6.3e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 Maf-like protein Secretin PF00263.21 GAJ45859.1 - 2e-33 115.5 0.9 3.3e-33 114.7 0.9 1.4 1 0 0 1 1 1 1 Bacterial type II and III secretion system protein Secretin_N_2 PF07655.13 GAJ45859.1 - 9.7e-05 22.8 0.6 0.00024 21.6 0.6 1.6 1 0 0 1 1 1 1 Secretin N-terminal domain DUF4974 PF16344.5 GAJ45859.1 - 0.00017 21.6 0.0 0.00053 19.9 0.0 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF4974) Glyco_hydro_35 PF01301.19 GAJ45859.1 - 0.037 13.7 0.1 0.058 13.0 0.1 1.2 1 0 0 1 1 1 0 Glycosyl hydrolases family 35 TEX13 PF15186.6 GAJ45859.1 - 0.095 12.4 0.1 0.24 11.1 0.1 1.7 1 1 0 1 1 1 0 Testis-expressed sequence 13 protein family Ala_racemase_N PF01168.20 GAJ45859.1 - 0.1 12.2 0.0 0.19 11.4 0.0 1.4 1 0 0 1 1 1 0 Alanine racemase, N-terminal domain DDE_Tnp_1 PF01609.21 GAJ45860.1 - 0.001 18.8 0.0 0.0013 18.5 0.0 1.1 1 0 0 1 1 1 1 Transposase DDE domain Phage_XkdX PF09693.10 GAJ45861.1 - 0.28 11.2 1.2 22 5.2 0.0 3.2 3 0 0 3 3 3 0 Phage uncharacterised protein (Phage_XkdX) BTG PF07742.12 GAJ45864.1 - 0.0049 16.7 0.3 0.069 13.0 0.0 2.2 2 0 0 2 2 2 1 BTG family NEMO PF11577.8 GAJ45864.1 - 0.25 11.4 1.5 0.65 10.1 0.0 2.3 3 0 0 3 3 3 0 NF-kappa-B essential modulator NEMO MFS_1 PF07690.16 GAJ45867.1 - 2.7e-08 33.1 28.9 2.7e-08 33.1 28.9 2.0 1 1 0 1 1 1 1 Major Facilitator Superfamily UbiA PF01040.18 GAJ45869.1 - 3e-26 92.3 14.5 3e-26 92.3 14.5 1.5 1 1 0 1 1 1 1 UbiA prenyltransferase family MurB_C PF02873.16 GAJ45871.1 - 1.2e-23 83.4 0.0 2.4e-23 82.5 0.0 1.5 1 0 0 1 1 1 1 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain FAD_binding_4 PF01565.23 GAJ45871.1 - 1.8e-19 69.9 0.1 6.3e-19 68.1 0.1 1.8 2 0 0 2 2 2 1 FAD binding domain Mur_ligase_M PF08245.12 GAJ45872.1 - 2.1e-22 80.1 0.0 4.1e-22 79.1 0.0 1.5 1 0 0 1 1 1 1 Mur ligase middle domain Mur_ligase_C PF02875.21 GAJ45872.1 - 3.5e-22 78.4 0.0 4.4e-21 74.9 0.0 2.6 3 0 0 3 3 3 1 Mur ligase family, glutamate ligase domain Mur_ligase PF01225.25 GAJ45872.1 - 2.2e-20 72.8 0.0 4e-20 71.9 0.0 1.5 1 0 0 1 1 1 1 Mur ligase family, catalytic domain BRCT PF00533.26 GAJ45872.1 - 9.9e-05 22.6 0.0 0.00022 21.6 0.0 1.6 1 0 0 1 1 1 1 BRCA1 C Terminus (BRCT) domain F420_oxidored PF03807.17 GAJ45872.1 - 0.045 14.3 0.1 0.39 11.3 0.0 2.5 3 0 0 3 3 3 0 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 GAJ45872.1 - 0.15 11.5 0.0 0.3 10.4 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Glyco_tran_28_C PF04101.16 GAJ45873.1 - 9.3e-24 84.3 0.0 2e-23 83.2 0.0 1.5 2 0 0 2 2 2 1 Glycosyltransferase family 28 C-terminal domain Glyco_transf_28 PF03033.20 GAJ45873.1 - 4.2e-13 49.5 0.0 9e-13 48.5 0.0 1.6 1 0 0 1 1 1 1 Glycosyltransferase family 28 N-terminal domain DciA PF05258.12 GAJ45876.1 - 1.3e-10 41.6 0.0 2.5e-10 40.6 0.0 1.6 1 0 0 1 1 1 1 Dna[CI] antecedent, DciA BPL_LplA_LipB PF03099.19 GAJ45877.1 - 9.1e-11 41.8 0.0 1.2e-10 41.4 0.0 1.2 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family HTH_23 PF13384.6 GAJ45879.1 - 2e-05 24.2 0.0 3.1e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.6 GAJ45879.1 - 0.00093 19.3 0.0 0.0014 18.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.6 GAJ45879.1 - 0.0012 18.5 0.0 0.002 17.8 0.0 1.3 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_7 PF02796.15 GAJ45879.1 - 0.0053 16.8 0.0 0.0074 16.3 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_psq PF05225.16 GAJ45879.1 - 0.0058 16.3 0.2 0.011 15.5 0.2 1.4 1 0 0 1 1 1 1 helix-turn-helix, Psq domain HTH_AsnC-type PF13404.6 GAJ45879.1 - 0.0077 16.0 0.0 0.011 15.6 0.0 1.2 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain Terminase_5 PF06056.12 GAJ45879.1 - 0.022 14.7 0.0 0.03 14.2 0.0 1.2 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) Sigma70_ECF PF07638.11 GAJ45879.1 - 0.029 14.3 0.0 0.033 14.1 0.0 1.1 1 0 0 1 1 1 0 ECF sigma factor GerE PF00196.19 GAJ45879.1 - 0.04 13.5 0.0 0.068 12.7 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_50 PF18024.1 GAJ45879.1 - 0.049 13.3 0.0 0.071 12.7 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain DmpG_comm PF07836.11 GAJ45879.1 - 0.049 13.2 0.0 0.093 12.3 0.0 1.5 1 0 0 1 1 1 0 DmpG-like communication domain HTH_11 PF08279.12 GAJ45879.1 - 0.068 13.1 0.0 0.09 12.7 0.0 1.3 1 0 0 1 1 1 0 HTH domain CENP-B_N PF04218.13 GAJ45879.1 - 0.074 12.7 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 CENP-B N-terminal DNA-binding domain Sigma70_r4_2 PF08281.12 GAJ45879.1 - 0.074 12.7 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_24 PF13412.6 GAJ45879.1 - 0.09 12.3 0.0 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding TetR_N PF00440.23 GAJ45879.1 - 0.1 12.4 0.1 0.17 11.7 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_Tnp_4 PF13613.6 GAJ45879.1 - 0.12 12.2 0.0 0.2 11.4 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease MarR_2 PF12802.7 GAJ45879.1 - 0.13 12.1 0.0 0.17 11.8 0.0 1.2 1 0 0 1 1 1 0 MarR family tRNA-synt_1c PF00749.21 GAJ45880.1 - 7.2e-60 202.5 0.0 1.1e-59 201.9 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1b PF00579.25 GAJ45880.1 - 0.016 14.5 0.3 1.6 8.0 0.0 2.6 3 0 0 3 3 3 0 tRNA synthetases class I (W and Y) DUF463 PF04317.12 GAJ45880.1 - 0.04 12.8 0.0 0.067 12.1 0.0 1.3 1 0 0 1 1 1 0 YcjX-like family, DUF463 OSCP PF00213.18 GAJ45881.1 - 7.8e-08 32.6 0.0 9.1e-08 32.4 0.0 1.1 1 0 0 1 1 1 1 ATP synthase delta (OSCP) subunit PRP3 PF08572.10 GAJ45882.1 - 0.031 14.0 0.5 0.034 13.9 0.5 1.0 1 0 0 1 1 1 0 pre-mRNA processing factor 3 (PRP3) Glyco_transf_17 PF04724.13 GAJ45882.1 - 0.13 11.3 0.0 0.13 11.3 0.0 1.0 1 0 0 1 1 1 0 Glycosyltransferase family 17 HHH_6 PF14579.6 GAJ45883.1 - 2.2e-24 85.5 0.0 4.8e-24 84.4 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif tRNA_anti-codon PF01336.25 GAJ45883.1 - 1.1e-07 31.7 0.0 2.5e-07 30.6 0.0 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain DUF4539 PF15072.6 GAJ45883.1 - 0.019 15.0 0.0 0.037 14.1 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4539) HHH_3 PF12836.7 GAJ45883.1 - 0.045 14.0 0.0 0.099 12.9 0.0 1.5 1 0 0 1 1 1 0 Helix-hairpin-helix motif DUF655 PF04919.12 GAJ45883.1 - 0.11 12.4 0.0 0.23 11.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF655) DNA_pol3_alpha PF07733.12 GAJ45884.1 - 1.7e-84 283.5 0.0 2.4e-84 283.0 0.0 1.2 1 0 0 1 1 1 1 Bacterial DNA polymerase III alpha NTPase domain DNA_pol3_finger PF17657.1 GAJ45884.1 - 6.9e-56 188.1 0.1 1.8e-55 186.8 0.0 1.7 2 0 0 2 2 2 1 Bacterial DNA polymerase III alpha subunit finger domain PHP PF02811.19 GAJ45885.1 - 5.9e-30 104.7 0.0 9.4e-30 104.1 0.0 1.3 1 0 0 1 1 1 1 PHP domain DNA_pol3_alpha PF07733.12 GAJ45885.1 - 9.1e-11 41.8 0.0 1.9e-10 40.8 0.0 1.5 1 0 0 1 1 1 1 Bacterial DNA polymerase III alpha NTPase domain Fis1_TPR_N PF14852.6 GAJ45885.1 - 0.13 12.0 0.0 0.24 11.1 0.0 1.5 1 0 0 1 1 1 0 Fis1 N-terminal tetratricopeptide repeat DDE_Tnp_1_2 PF13586.6 GAJ45886.1 - 0.00018 21.8 0.1 0.00019 21.7 0.1 1.2 1 0 0 1 1 1 1 Transposase DDE domain HTH_Tnp_IS630 PF01710.16 GAJ45887.1 - 1.3e-05 25.2 1.8 1.5e-05 25.0 1.8 1.1 1 0 0 1 1 1 1 Transposase HTH_1 PF00126.27 GAJ45887.1 - 0.05 13.6 0.1 0.11 12.4 0.1 1.7 1 1 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family IPPT PF01715.17 GAJ45888.1 - 6.6e-50 170.0 0.0 8.5e-50 169.7 0.0 1.0 1 0 0 1 1 1 1 IPP transferase IPT PF01745.16 GAJ45888.1 - 0.009 15.4 0.0 0.021 14.3 0.0 1.6 2 0 0 2 2 2 1 Isopentenyl transferase AAA_18 PF13238.6 GAJ45888.1 - 0.025 15.1 0.1 0.87 10.1 0.0 2.4 2 1 0 2 2 2 0 AAA domain AAA_33 PF13671.6 GAJ45888.1 - 0.06 13.5 0.0 0.19 11.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.6 GAJ45888.1 - 0.11 12.5 0.0 0.24 11.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain RRF PF01765.19 GAJ45889.1 - 1.1e-36 126.2 0.1 1.3e-36 126.0 0.1 1.1 1 0 0 1 1 1 1 Ribosome recycling factor ApoLp-III PF07464.11 GAJ45890.1 - 0.0027 17.8 1.1 0.0034 17.5 1.1 1.2 1 0 0 1 1 1 1 Apolipophorin-III precursor (apoLp-III) GatB_N PF02934.15 GAJ45892.1 - 4.1e-104 347.8 0.0 2e-103 345.5 0.0 1.9 2 0 0 2 2 2 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 GAJ45892.1 - 9.1e-29 100.3 1.3 1.4e-28 99.7 1.3 1.3 1 0 0 1 1 1 1 GatB domain DUF520 PF04461.13 GAJ45892.1 - 0.08 13.1 0.2 0.16 12.1 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF520) TFIIE_beta PF02186.15 GAJ45892.1 - 0.15 12.4 0.3 0.61 10.4 0.3 2.0 1 0 0 1 1 1 0 TFIIE beta subunit core domain DUF2802 PF10975.8 GAJ45892.1 - 2.5 8.3 5.7 26 5.0 0.0 3.2 4 0 0 4 4 4 0 Protein of unknown function (DUF2802) Apt1 PF10351.9 GAJ45893.1 - 0.087 11.7 10.3 0.075 11.9 10.3 1.2 1 0 0 1 1 1 0 Golgi-body localisation protein domain Zip PF02535.22 GAJ45893.1 - 2.2 7.4 4.9 2.9 7.0 4.9 1.1 1 0 0 1 1 1 0 ZIP Zinc transporter Presenilin PF01080.17 GAJ45893.1 - 4 6.1 12.5 5.3 5.7 12.5 1.1 1 0 0 1 1 1 0 Presenilin NYD-SP28 PF14772.6 GAJ45894.1 - 3.5e-05 23.8 2.6 9.3e-05 22.4 2.6 1.7 1 0 0 1 1 1 1 Sperm tail Mating_N PF12731.7 GAJ45894.1 - 0.0088 16.1 0.1 0.048 13.7 0.0 2.2 1 1 0 1 1 1 1 Mating-type protein beta 1 KinB_sensor PF16767.5 GAJ45894.1 - 0.012 16.0 0.2 0.03 14.8 0.1 1.6 1 1 0 1 1 1 0 Sensor domain of alginate biosynthesis sensor protein KinB DUF445 PF04286.12 GAJ45894.1 - 0.014 15.2 3.8 0.022 14.6 3.8 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF445) Baculo_PEP_C PF04513.12 GAJ45894.1 - 0.024 14.7 0.6 0.7 9.9 0.4 2.3 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus RPN6_N PF18055.1 GAJ45894.1 - 0.028 14.8 0.7 0.076 13.4 0.7 1.8 1 1 0 1 1 1 0 26S proteasome regulatory subunit RPN6 N-terminal domain Syntaxin_2 PF14523.6 GAJ45894.1 - 0.042 14.2 5.9 0.22 11.9 2.7 2.7 1 1 1 2 2 2 0 Syntaxin-like protein Cytochrom_B562 PF07361.11 GAJ45894.1 - 0.056 14.1 0.3 24 5.7 1.1 2.8 1 1 1 2 2 2 0 Cytochrome b562 FCH PF00611.23 GAJ45894.1 - 0.068 13.5 0.1 2 8.8 0.0 2.8 2 1 1 3 3 3 0 Fes/CIP4, and EFC/F-BAR homology domain YtxH PF12732.7 GAJ45894.1 - 0.12 12.9 0.2 1.1 9.8 0.1 2.4 1 1 1 2 2 2 0 YtxH-like protein MADF_DNA_bdg PF10545.9 GAJ45894.1 - 0.13 12.6 0.7 1.1 9.6 0.1 2.1 2 0 0 2 2 2 0 Alcohol dehydrogenase transcription factor Myb/SANT-like DUF3150 PF11348.8 GAJ45894.1 - 0.14 11.4 1.3 1.3 8.2 0.0 2.4 1 1 2 3 3 3 0 Protein of unknown function (DUF3150) GLE1 PF07817.13 GAJ45894.1 - 0.16 11.2 1.1 0.2 10.9 1.1 1.4 1 0 0 1 1 1 0 GLE1-like protein Csm2_III-A PF03750.13 GAJ45894.1 - 0.16 12.8 2.5 0.28 12.0 1.6 1.8 1 1 0 1 1 1 0 Csm2 Type III-A NAAA-beta PF15508.6 GAJ45894.1 - 0.24 11.7 0.7 36 4.8 0.1 3.1 2 1 0 2 2 2 0 beta subunit of N-acylethanolamine-hydrolyzing acid amidase Spore_III_AB PF09548.10 GAJ45894.1 - 0.36 10.9 3.1 0.59 10.2 1.5 2.0 1 1 1 2 2 2 0 Stage III sporulation protein AB (spore_III_AB) UPF0147 PF03685.13 GAJ45894.1 - 0.73 9.9 3.7 2.7 8.1 0.2 2.9 3 1 1 4 4 4 0 Uncharacterised protein family (UPF0147) DASH_Dam1 PF08653.10 GAJ45894.1 - 0.78 9.6 4.5 1 9.2 0.3 2.9 3 1 0 3 3 3 0 DASH complex subunit Dam1 GrpE PF01025.19 GAJ45894.1 - 1 9.0 7.0 0.3 10.7 3.4 1.9 1 1 1 2 2 2 0 GrpE Fib_alpha PF08702.10 GAJ45894.1 - 1.1 9.5 5.7 1.1 9.4 2.9 2.2 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family FliD_N PF02465.18 GAJ45894.1 - 3.4 8.4 6.0 18 6.1 5.4 2.4 1 1 1 2 2 2 0 Flagellar hook-associated protein 2 N-terminus DUF5601 PF18151.1 GAJ45894.1 - 3.6 8.0 8.0 0.5 10.7 1.5 2.7 3 1 0 3 3 3 0 Domain of unknown function (DUF5601) Flu_NS2 PF00601.19 GAJ45895.1 - 0.017 15.4 0.2 0.061 13.6 0.2 1.9 1 0 0 1 1 1 0 Influenza non-structural protein (NS2) DUF2847 PF11009.8 GAJ45895.1 - 0.91 9.5 3.9 1 9.3 0.7 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF2847) DDE_Tnp_1 PF01609.21 GAJ45896.1 - 0.00033 20.4 0.0 0.0004 20.1 0.0 1.1 1 0 0 1 1 1 1 Transposase DDE domain CdiI_N PF18228.1 GAJ45897.1 - 0.012 15.5 0.1 0.014 15.2 0.1 1.1 1 0 0 1 1 1 0 CdiI N-terminal domain Phage_XkdX PF09693.10 GAJ45897.1 - 0.16 12.0 0.5 28 4.9 0.0 3.0 3 0 0 3 3 3 0 Phage uncharacterised protein (Phage_XkdX) GSK-3_bind PF05350.12 GAJ45898.1 - 0.053 12.8 0.1 0.056 12.7 0.1 1.0 1 0 0 1 1 1 0 Glycogen synthase kinase-3 binding bVLRF1 PF18826.1 GAJ45900.1 - 0.02 14.7 0.4 0.032 14.1 0.4 1.3 1 0 0 1 1 1 0 bacteroidetes VLRF1 release factor Bcl-2_3 PF15286.6 GAJ45900.1 - 0.038 14.6 0.3 0.042 14.5 0.3 1.1 1 0 0 1 1 1 0 Apoptosis regulator M11, B cell 2 leukaemia/lymphoma like ABC_membrane PF00664.23 GAJ45900.1 - 0.13 11.9 3.9 0.29 10.7 1.1 2.0 2 0 0 2 2 2 0 ABC transporter transmembrane region PdaC PF13739.6 GAJ45900.1 - 0.77 10.8 9.3 0.28 12.2 5.5 1.9 1 1 1 2 2 2 0 Deacetylase PdaC PseudoU_synth_2 PF00849.22 GAJ45904.1 - 3.7e-29 101.9 0.0 6.4e-29 101.1 0.0 1.4 1 0 0 1 1 1 1 RNA pseudouridylate synthase S4 PF01479.25 GAJ45904.1 - 0.0017 18.0 0.1 0.0082 15.8 0.0 2.1 2 0 0 2 2 2 1 S4 domain HTH_40 PF14493.6 GAJ45905.1 - 0.057 13.9 4.6 4.6 7.8 0.1 2.2 1 1 1 2 2 2 0 Helix-turn-helix domain SUV3_C PF12513.8 GAJ45905.1 - 0.52 10.3 2.7 13 5.8 0.1 3.1 3 1 1 4 4 4 0 Mitochondrial degradasome RNA helicase subunit C terminal DUF1977 PF09320.11 GAJ45905.1 - 0.65 10.3 3.7 16 5.8 0.5 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1977) FlgT_N PF16548.5 GAJ45906.1 - 0.061 13.9 0.2 0.073 13.6 0.2 1.0 1 0 0 1 1 1 0 Flagellar assembly protein T, N-terminal domain DDE_3 PF13358.6 GAJ45907.1 - 1.8e-05 24.6 0.0 1.9e-05 24.5 0.0 1.1 1 0 0 1 1 1 1 DDE superfamily endonuclease DUF1013 PF06242.11 GAJ45908.1 - 8.7e-36 123.0 0.0 1.7e-35 122.1 0.0 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF1013) LpxK PF02606.14 GAJ45909.1 - 4.7e-63 213.3 0.0 6.3e-63 212.8 0.0 1.1 1 0 0 1 1 1 1 Tetraacyldisaccharide-1-P 4'-kinase UvrD-helicase PF00580.21 GAJ45910.1 - 2.2e-67 227.8 8.8 1e-65 222.4 5.5 3.1 2 1 0 2 2 2 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.6 GAJ45910.1 - 6.8e-59 200.0 0.3 3.8e-58 197.6 0.0 2.2 2 1 0 2 2 2 1 UvrD-like helicase C-terminal domain AAA_19 PF13245.6 GAJ45910.1 - 1.1e-32 113.4 0.0 3.3e-32 111.8 0.0 1.8 1 0 0 1 1 1 1 AAA domain UvrD_C_2 PF13538.6 GAJ45910.1 - 2.7e-09 36.7 0.2 9.2e-09 35.0 0.2 1.9 1 1 0 1 1 1 1 UvrD-like helicase C-terminal domain Viral_helicase1 PF01443.18 GAJ45910.1 - 1.4e-06 28.2 0.2 0.0004 20.2 0.0 3.2 3 0 0 3 3 3 1 Viral (Superfamily 1) RNA helicase AAA_30 PF13604.6 GAJ45910.1 - 1.8e-05 24.6 0.2 0.00017 21.4 0.2 2.3 1 1 0 1 1 1 1 AAA domain T2SSE PF00437.20 GAJ45910.1 - 0.014 14.5 0.1 0.042 12.9 0.1 1.8 1 0 0 1 1 1 0 Type II/IV secretion system protein ResIII PF04851.15 GAJ45910.1 - 0.017 15.1 0.7 0.048 13.7 0.1 2.0 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_12 PF13087.6 GAJ45910.1 - 0.046 13.3 0.4 13 5.3 0.1 3.1 2 1 0 2 2 2 0 AAA domain AAA_11 PF13086.6 GAJ45910.1 - 0.051 13.4 0.1 0.12 12.2 0.1 1.6 1 0 0 1 1 1 0 AAA domain UvrD-helicase PF00580.21 GAJ45911.1 - 1.3e-55 189.1 16.2 5.5e-32 111.5 2.5 3.1 2 1 1 3 3 3 2 UvrD/REP helicase N-terminal domain UvrD_C PF13361.6 GAJ45911.1 - 1.1e-48 166.4 9.2 2.4e-28 99.5 1.5 2.6 3 0 0 3 3 3 2 UvrD-like helicase C-terminal domain AAA_19 PF13245.6 GAJ45911.1 - 4.3e-29 101.7 0.0 8.8e-29 100.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain UvrD_C_2 PF13538.6 GAJ45911.1 - 8.3e-08 32.0 0.1 1.1e-06 28.4 0.1 2.4 1 1 0 1 1 1 1 UvrD-like helicase C-terminal domain Viral_helicase1 PF01443.18 GAJ45911.1 - 2.5e-05 24.1 0.0 0.052 13.3 0.0 3.0 3 0 0 3 3 3 2 Viral (Superfamily 1) RNA helicase AAA_30 PF13604.6 GAJ45911.1 - 0.00047 19.9 0.4 0.022 14.5 0.4 2.5 2 1 0 2 2 2 1 AAA domain ResIII PF04851.15 GAJ45911.1 - 0.037 14.0 1.4 1.2 9.1 0.1 3.0 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit T2SSE PF00437.20 GAJ45911.1 - 0.12 11.4 0.0 0.23 10.5 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein Hydrolase_4 PF12146.8 GAJ45912.1 - 5.1e-07 29.2 0.0 2.4e-05 23.7 0.0 2.2 2 0 0 2 2 2 1 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 GAJ45912.1 - 1.1e-05 25.2 0.0 5.9e-05 22.8 0.0 1.9 1 1 1 2 2 2 1 alpha/beta hydrolase fold Peptidase_S9 PF00326.21 GAJ45912.1 - 2.6e-05 23.8 0.0 0.041 13.4 0.0 2.1 1 1 1 2 2 2 2 Prolyl oligopeptidase family Peptidase_S15 PF02129.18 GAJ45912.1 - 6.9e-05 22.6 0.0 0.00013 21.7 0.0 1.4 2 0 0 2 2 2 1 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_6 PF12697.7 GAJ45912.1 - 0.0007 20.3 0.0 0.002 18.7 0.0 1.6 1 1 1 2 2 2 1 Alpha/beta hydrolase family DUF818 PF05677.12 GAJ45912.1 - 0.0049 15.9 0.0 0.0066 15.4 0.0 1.1 1 0 0 1 1 1 1 Chlamydia CHLPS protein (DUF818) DLH PF01738.18 GAJ45912.1 - 0.063 12.8 0.0 0.083 12.4 0.0 1.2 1 0 0 1 1 1 0 Dienelactone hydrolase family malic PF00390.19 GAJ45913.1 - 2.1e-21 76.5 0.1 1.3e-18 67.4 0.1 2.4 1 1 0 1 1 1 1 Malic enzyme, N-terminal domain Malic_M PF03949.15 GAJ45913.1 - 7.8e-20 71.2 0.0 2.4e-19 69.6 0.0 1.7 1 1 0 1 1 1 1 Malic enzyme, NAD binding domain MgtE_N PF03448.17 GAJ45914.1 - 2.5e-14 53.7 1.4 3.7e-14 53.1 1.2 1.3 1 1 0 1 1 1 1 MgtE intracellular N domain FliG_M PF14841.6 GAJ45914.1 - 0.008 16.4 1.0 1.2 9.4 0.8 2.9 1 1 1 2 2 2 1 FliG middle domain RNA_binding PF01877.17 GAJ45914.1 - 0.016 15.4 0.3 0.044 14.1 0.1 1.7 1 1 1 2 2 2 0 RNA binding CAMSAP_CH PF11971.8 GAJ45914.1 - 0.079 12.8 0.0 0.18 11.6 0.0 1.6 1 0 0 1 1 1 0 CAMSAP CH domain CBS PF00571.28 GAJ45915.1 - 2.5e-11 43.9 1.0 1.8e-05 25.1 1.1 2.4 2 0 0 2 2 2 2 CBS domain MgtE PF01769.16 GAJ45915.1 - 1.9e-10 41.2 2.7 2e-10 41.1 0.6 1.9 2 0 0 2 2 2 1 Divalent cation transporter PRC PF05239.16 GAJ45915.1 - 0.089 12.9 0.1 0.27 11.4 0.1 1.7 1 0 0 1 1 1 0 PRC-barrel domain MgtE PF01769.16 GAJ45916.1 - 7.5e-08 32.8 0.6 8.3e-08 32.7 0.6 1.1 1 0 0 1 1 1 1 Divalent cation transporter Ribosomal_L35p PF01632.19 GAJ45917.1 - 2.2e-20 72.9 9.2 2.6e-20 72.6 9.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L35 Ribosomal_L20 PF00453.18 GAJ45918.1 - 1.3e-43 147.5 2.6 1.5e-43 147.2 2.6 1.1 1 0 0 1 1 1 1 Ribosomal protein L20 DUF2312 PF10073.9 GAJ45919.1 - 2.6e-22 78.2 5.5 2.9e-22 78.1 5.5 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2312) sCache_like PF16736.5 GAJ45919.1 - 0.018 15.1 0.6 0.021 14.9 0.6 1.1 1 0 0 1 1 1 0 Single Cache-like Nif11 PF07862.11 GAJ45919.1 - 0.049 13.9 0.2 0.097 13.0 0.2 1.5 1 0 0 1 1 1 0 Nif11 domain HBD PF18534.1 GAJ45919.1 - 0.062 13.4 1.8 0.16 12.1 1.8 1.7 1 1 0 1 1 1 0 Helical bundle domain Abhydrolase_2 PF02230.16 GAJ45920.1 - 7.6e-22 78.2 0.0 1.1e-21 77.6 0.0 1.3 1 0 0 1 1 1 1 Phospholipase/Carboxylesterase Hydrolase_4 PF12146.8 GAJ45920.1 - 0.0017 17.7 0.6 1.8 7.8 0.3 3.0 1 1 1 2 2 2 2 Serine aminopeptidase, S33 FSH1 PF03959.13 GAJ45920.1 - 0.006 16.3 0.7 0.11 12.1 0.7 2.7 1 1 0 1 1 1 1 Serine hydrolase (FSH1) Abhydrolase_6 PF12697.7 GAJ45920.1 - 0.0073 16.9 0.1 0.0099 16.5 0.1 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family Alba PF01918.21 GAJ45920.1 - 0.12 12.2 0.0 0.21 11.4 0.0 1.4 1 0 0 1 1 1 0 Alba LptF_LptG PF03739.14 GAJ45921.1 - 2e-29 102.5 1.5 2.3e-29 102.3 1.5 1.1 1 0 0 1 1 1 1 Lipopolysaccharide export system permease LptF/LptG LptF_LptG PF03739.14 GAJ45922.1 - 2.2e-06 26.8 0.6 2.3e-06 26.7 0.6 1.0 1 0 0 1 1 1 1 Lipopolysaccharide export system permease LptF/LptG CUE PF02845.16 GAJ45924.1 - 0.019 14.7 0.0 0.025 14.3 0.0 1.2 1 0 0 1 1 1 0 CUE domain Transket_pyr PF02779.24 GAJ45925.1 - 1.2e-46 158.7 0.0 1.6e-46 158.3 0.0 1.2 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 GAJ45925.1 - 2.3e-36 124.4 0.0 4.2e-36 123.6 0.0 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain PFOR_II PF17147.4 GAJ45925.1 - 0.062 13.6 0.0 0.12 12.7 0.0 1.5 1 0 0 1 1 1 0 Pyruvate:ferredoxin oxidoreductase core domain II 2-oxoacid_dh PF00198.23 GAJ45926.1 - 9.5e-79 264.1 0.2 1.2e-78 263.7 0.2 1.1 1 0 0 1 1 1 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Biotin_lipoyl PF00364.22 GAJ45926.1 - 7.5e-15 54.5 0.0 2e-14 53.2 0.0 1.7 1 0 0 1 1 1 1 Biotin-requiring enzyme E3_binding PF02817.17 GAJ45926.1 - 1.2e-13 51.2 0.0 2.3e-13 50.2 0.0 1.5 1 0 0 1 1 1 1 e3 binding domain DDE_Tnp_4 PF13359.6 GAJ45927.1 - 0.042 13.5 0.0 0.053 13.2 0.0 1.3 1 0 0 1 1 1 0 DDE superfamily endonuclease ANAPC4_WD40 PF12894.7 GAJ45928.1 - 0.0077 16.5 0.5 0.52 10.6 0.1 3.3 3 1 0 3 3 3 1 Anaphase-promoting complex subunit 4 WD40 domain G0-G1_switch_2 PF15103.6 GAJ45928.1 - 0.037 14.4 0.6 0.44 11.0 0.0 2.3 2 0 0 2 2 2 0 G0/G1 switch protein 2 PD40 PF07676.12 GAJ45928.1 - 0.049 13.6 0.0 0.7 9.9 0.1 2.9 3 0 0 3 3 3 0 WD40-like Beta Propeller Repeat Tricorn_C1 PF14684.6 GAJ45929.1 - 2.2e-25 88.5 1.1 4.5e-25 87.5 1.1 1.6 1 0 0 1 1 1 1 Tricorn protease C1 domain Peptidase_S41 PF03572.18 GAJ45929.1 - 2.3e-25 89.1 0.0 5.7e-25 87.8 0.0 1.6 1 1 0 1 1 1 1 Peptidase family S41 Tricorn_PDZ PF14685.6 GAJ45929.1 - 2.9e-08 33.5 0.0 7.4e-08 32.3 0.0 1.7 1 0 0 1 1 1 1 Tricorn protease PDZ domain Peptidase_S66C PF17676.1 GAJ45930.1 - 4.2e-25 88.7 0.0 1.3e-24 87.1 0.0 1.8 2 0 0 2 2 2 1 LD-carboxypeptidase C-terminal domain Peptidase_S66 PF02016.15 GAJ45930.1 - 8.1e-21 74.4 0.0 1.5e-20 73.5 0.0 1.4 1 0 0 1 1 1 1 LD-carboxypeptidase N-terminal domain Fe-S_biosyn PF01521.20 GAJ45931.1 - 6.6e-16 58.5 0.0 7.9e-16 58.2 0.0 1.0 1 0 0 1 1 1 1 Iron-sulphur cluster biosynthesis Methyltrans_RNA PF04452.14 GAJ45932.1 - 1e-45 155.8 0.0 1.2e-45 155.7 0.0 1.0 1 0 0 1 1 1 1 RNA methyltransferase Met_gamma_lyase PF06838.11 GAJ45934.1 - 0.011 14.2 0.7 1.6 7.2 0.2 2.3 2 0 0 2 2 2 0 Methionine gamma-lyase DUF1419 PF07215.11 GAJ45934.1 - 0.061 13.4 0.0 0.19 11.8 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1419) CAP_N PF01213.19 GAJ45934.1 - 0.26 10.7 3.6 0.48 9.8 0.4 2.1 2 0 0 2 2 2 0 Adenylate cyclase associated (CAP) N terminal DDE_Tnp_IS1 PF03400.13 GAJ45935.1 - 0.00068 20.0 0.0 0.0008 19.7 0.0 1.2 1 0 0 1 1 1 1 IS1 transposase HTH_23 PF13384.6 GAJ45936.1 - 0.0062 16.3 0.0 0.0081 15.9 0.0 1.2 1 0 0 1 1 1 1 Homeodomain-like domain HTH_19 PF12844.7 GAJ45936.1 - 0.041 13.9 0.0 0.066 13.2 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_38 PF13936.6 GAJ45936.1 - 0.21 11.4 0.0 0.28 11.0 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain DUF3492 PF11997.8 GAJ45937.1 - 0.33 10.7 3.1 0.36 10.5 2.1 1.6 1 1 1 2 2 2 0 Domain of unknown function (DUF3492) Peptidase_M75 PF09375.10 GAJ45937.1 - 0.45 9.9 3.7 1.8 7.9 0.1 2.4 2 1 0 2 2 2 0 Imelysin TipAS PF07739.13 GAJ45937.1 - 1.2 9.7 13.3 3.1 8.4 0.2 3.3 1 1 0 2 2 2 0 TipAS antibiotic-recognition domain ERG2_Sigma1R PF04622.12 GAJ45937.1 - 3.5 6.9 4.5 22 4.3 1.6 2.6 2 1 1 3 3 3 0 ERG2 and Sigma1 receptor like protein OMP_b-brl PF13505.6 GAJ45940.1 - 1.5e-05 25.2 0.8 0.00019 21.6 0.8 2.2 1 1 0 1 1 1 1 Outer membrane protein beta-barrel domain OmpA_membrane PF01389.17 GAJ45940.1 - 0.0023 17.7 0.0 0.0044 16.8 0.0 1.6 1 1 0 1 1 1 1 OmpA-like transmembrane domain DDE_Tnp_1 PF01609.21 GAJ45941.1 - 0.062 12.9 0.0 0.072 12.7 0.0 1.0 1 0 0 1 1 1 0 Transposase DDE domain DDE_Tnp_IS240 PF13610.6 GAJ45941.1 - 0.073 13.3 0.0 0.082 13.1 0.0 1.1 1 0 0 1 1 1 0 DDE domain DDE_3 PF13358.6 GAJ45942.1 - 1.3e-07 31.5 0.0 1.3e-07 31.4 0.0 1.1 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_54 PF18607.1 GAJ45942.1 - 0.075 13.1 0.1 0.086 12.9 0.1 1.1 1 0 0 1 1 1 0 ParA helix turn helix domain HTH_Tnp_IS630 PF01710.16 GAJ45943.1 - 1.7e-07 31.3 0.1 2.1e-07 31.0 0.1 1.1 1 0 0 1 1 1 1 Transposase HTH_23 PF13384.6 GAJ45943.1 - 6.6e-07 29.0 0.0 7.9e-07 28.7 0.0 1.2 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.6 GAJ45943.1 - 2.4e-06 27.5 0.1 3e-06 27.2 0.1 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain DUF746 PF05344.11 GAJ45943.1 - 0.00025 20.8 0.0 0.00034 20.4 0.0 1.1 1 0 0 1 1 1 1 Domain of Unknown Function (DUF746) HTH_29 PF13551.6 GAJ45943.1 - 0.027 14.5 0.1 0.031 14.3 0.1 1.1 1 0 0 1 1 1 0 Winged helix-turn helix HTH_Tnp_1 PF01527.20 GAJ45943.1 - 0.03 14.6 0.0 0.034 14.5 0.0 1.1 1 0 0 1 1 1 0 Transposase DDE_3 PF13358.6 GAJ45944.1 - 4.3e-12 46.0 0.0 4.8e-12 45.9 0.0 1.0 1 0 0 1 1 1 1 DDE superfamily endonuclease HAD_2 PF13419.6 GAJ45945.1 - 2e-27 96.4 0.0 2.5e-27 96.1 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 GAJ45945.1 - 4.3e-08 33.7 0.0 8.1e-05 23.0 0.0 2.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 GAJ45945.1 - 1.1e-06 29.2 0.0 1.6e-06 28.6 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 GAJ45945.1 - 0.009 16.1 0.0 0.016 15.3 0.0 1.3 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase_6 PF13344.6 GAJ45945.1 - 0.045 13.9 0.0 0.21 11.7 0.0 2.2 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase UMPH-1 PF05822.12 GAJ45945.1 - 0.15 11.6 0.0 0.37 10.3 0.0 1.7 2 0 0 2 2 2 0 Pyrimidine 5'-nucleotidase (UMPH-1) Holin_SPP1 PF04688.13 GAJ45945.1 - 0.21 11.8 0.0 0.42 10.8 0.0 1.4 1 0 0 1 1 1 0 SPP1 phage holin Hfq PF17209.3 GAJ45946.1 - 6.4e-18 64.2 0.1 8.5e-18 63.8 0.1 1.1 1 0 0 1 1 1 1 Hfq protein Glyco_transf_25 PF01755.17 GAJ45947.1 - 4.2e-21 75.7 0.0 3.3e-20 72.8 0.0 2.0 1 1 0 1 1 1 1 Glycosyltransferase family 25 (LPS biosynthesis protein) ATP-synt_ab PF00006.25 GAJ45949.1 - 2.7e-73 246.1 0.0 3.9e-73 245.6 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.27 GAJ45949.1 - 8.4e-43 145.7 0.6 2.7e-42 144.1 0.2 1.9 2 0 0 2 2 2 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.23 GAJ45949.1 - 4.1e-14 52.8 1.2 1.4e-13 51.1 1.2 2.0 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain ATP-synt PF00231.19 GAJ45950.1 - 2.9e-50 171.6 1.0 3.3e-50 171.4 1.0 1.0 1 0 0 1 1 1 1 ATP synthase PriX PF18689.1 GAJ45950.1 - 0.027 14.8 0.4 0.066 13.6 0.4 1.6 1 0 0 1 1 1 0 Primase X Alpha_Helical PF18489.1 GAJ45950.1 - 0.087 13.0 1.1 0.2 11.9 0.1 2.0 2 0 0 2 2 2 0 Alpha helical domain HTH_Tnp_IS630 PF01710.16 GAJ45953.1 - 1.3e-10 41.4 0.4 1.5e-10 41.2 0.4 1.0 1 0 0 1 1 1 1 Transposase HTH_28 PF13518.6 GAJ45953.1 - 8.5e-06 25.8 0.5 1.1e-05 25.5 0.5 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 GAJ45953.1 - 0.00028 20.6 0.1 0.00037 20.2 0.1 1.2 1 0 0 1 1 1 1 Homeodomain-like domain HTH_Tnp_4 PF13613.6 GAJ45953.1 - 0.11 12.2 0.1 0.25 11.1 0.0 1.6 2 1 0 2 2 2 0 Helix-turn-helix of DDE superfamily endonuclease PAX PF00292.18 GAJ45953.1 - 0.13 12.1 0.0 0.15 12.0 0.0 1.0 1 0 0 1 1 1 0 'Paired box' domain Hexapep PF00132.24 GAJ45954.1 - 2.2e-18 65.2 0.9 2.1e-05 24.0 0.0 4.4 4 0 0 4 4 4 4 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 GAJ45954.1 - 4.5e-15 56.4 0.0 7.2e-15 55.7 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.6 GAJ45954.1 - 3e-08 33.3 2.0 2.7e-06 27.0 0.0 3.7 3 1 0 3 3 3 1 Hexapeptide repeat of succinyl-transferase IspD PF01128.19 GAJ45954.1 - 0.0003 20.6 0.0 0.00072 19.4 0.0 1.6 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.19 GAJ45954.1 - 0.031 14.2 0.0 0.066 13.1 0.0 1.5 1 1 0 1 1 1 0 Cytidylyltransferase DEAD PF00270.29 GAJ45955.1 - 2.9e-14 53.2 0.1 7.5e-14 51.9 0.1 1.8 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 GAJ45955.1 - 8.5e-12 45.4 0.0 3.6e-11 43.4 0.0 2.0 2 0 0 2 2 2 1 Helicase conserved C-terminal domain RecG_wedge PF17191.4 GAJ45955.1 - 2.5e-09 37.0 0.0 4.8e-09 36.0 0.0 1.5 1 0 0 1 1 1 1 RecG wedge domain ResIII PF04851.15 GAJ45955.1 - 4.8e-06 26.7 0.0 1e-05 25.6 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SecA_DEAD PF07517.14 GAJ45955.1 - 0.04 13.2 0.0 0.064 12.5 0.0 1.3 1 0 0 1 1 1 0 SecA DEAD-like domain MreB_Mbl PF06723.13 GAJ45956.1 - 4.6e-131 436.5 4.0 5.3e-131 436.3 4.0 1.0 1 0 0 1 1 1 1 MreB/Mbl protein HSP70 PF00012.20 GAJ45956.1 - 1.7e-14 53.0 2.4 4e-13 48.4 0.2 2.7 2 1 0 2 2 2 1 Hsp70 protein Actin PF00022.19 GAJ45956.1 - 2.2e-11 43.0 0.1 2.2e-08 33.1 0.0 2.0 1 1 1 2 2 2 2 Actin FtsA PF14450.6 GAJ45956.1 - 3.9e-08 33.7 1.0 1.8e-07 31.5 0.1 2.3 2 1 0 2 2 2 1 Cell division protein FtsA PilM_2 PF11104.8 GAJ45956.1 - 3.3e-07 29.7 0.1 0.009 15.1 0.0 3.0 2 1 1 3 3 3 2 Type IV pilus assembly protein PilM; EutA PF06277.11 GAJ45956.1 - 0.00028 19.9 0.4 0.0028 16.6 0.1 2.3 2 0 0 2 2 2 1 Ethanolamine utilisation protein EutA Ppx-GppA PF02541.16 GAJ45956.1 - 0.0016 17.9 0.5 0.007 15.8 0.2 2.1 3 0 0 3 3 3 1 Ppx/GppA phosphatase family StbA PF06406.11 GAJ45956.1 - 0.0019 17.5 0.4 0.024 13.9 0.3 2.2 1 1 0 1 1 1 1 StbA protein DDR PF08841.10 GAJ45956.1 - 0.0039 16.2 0.7 0.011 14.8 0.4 1.8 2 0 0 2 2 2 1 Diol dehydratase reactivase ATPase-like domain BcrAD_BadFG PF01869.20 GAJ45956.1 - 0.024 14.2 2.7 0.44 10.0 0.0 2.4 2 1 0 2 2 2 0 BadF/BadG/BcrA/BcrD ATPase family PolyA_pol PF01743.20 GAJ45957.1 - 6.4e-26 91.2 0.0 9.5e-26 90.7 0.0 1.3 1 0 0 1 1 1 1 Poly A polymerase head domain PolyA_pol_RNAbd PF12627.7 GAJ45957.1 - 3.7e-07 29.8 0.1 1.3e-06 28.0 0.0 1.9 2 0 0 2 2 2 1 Probable RNA and SrmB- binding site of polymerase A tRNA-synt_2e PF02091.15 GAJ45958.1 - 2.5e-113 378.0 0.0 2.8e-113 377.8 0.0 1.0 1 0 0 1 1 1 1 Glycyl-tRNA synthetase alpha subunit ABC1 PF03109.16 GAJ45960.1 - 8.8e-18 64.6 0.0 1.5e-17 63.9 0.0 1.4 1 0 0 1 1 1 1 ABC1 family APH PF01636.23 GAJ45960.1 - 3.9e-05 23.7 0.1 0.0006 19.8 0.0 2.4 2 1 0 2 2 2 1 Phosphotransferase enzyme family Pkinase PF00069.25 GAJ45960.1 - 0.017 14.5 0.0 0.03 13.7 0.0 1.4 1 0 0 1 1 1 0 Protein kinase domain Glucos_trans_II PF14264.6 GAJ45960.1 - 0.052 12.9 0.0 0.094 12.1 0.0 1.4 1 1 0 1 1 1 0 Glucosyl transferase GtrII tRNA-synt_1f PF01921.18 GAJ45961.1 - 3.9e-122 407.7 0.0 4.6e-122 407.4 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class I (K) tRNA-synt_1g PF09334.11 GAJ45961.1 - 0.0042 15.9 0.0 0.0078 15.0 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 GAJ45961.1 - 0.1 11.9 0.0 0.19 11.0 0.0 1.4 1 0 0 1 1 1 0 tRNA synthetases class I (C) catalytic domain Peptidase_M22 PF00814.25 GAJ45962.1 - 4.3e-78 262.8 0.0 5e-78 262.5 0.0 1.0 1 0 0 1 1 1 1 Glycoprotease family CDP-OH_P_transf PF01066.21 GAJ45963.1 - 5.3e-13 49.5 0.4 5.3e-13 49.5 0.4 2.8 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase MlaA PF04333.13 GAJ45964.1 - 3.9e-49 167.0 0.0 4.9e-49 166.7 0.0 1.1 1 0 0 1 1 1 1 MlaA lipoprotein PIEZO PF15917.5 GAJ45965.1 - 0.0069 15.9 2.4 0.011 15.2 2.4 1.3 1 0 0 1 1 1 1 Piezo Bac_DNA_binding PF00216.21 GAJ45967.1 - 8.1e-24 83.6 0.0 1.1e-23 83.2 0.0 1.2 1 0 0 1 1 1 1 Bacterial DNA-binding protein HU-CCDC81_bac_2 PF18175.1 GAJ45967.1 - 2.4e-05 24.1 0.0 4.2e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 CCDC81-like prokaryotic HU domain 2 HU-HIG PF18291.1 GAJ45967.1 - 4.1e-05 23.7 0.0 4.6e-05 23.5 0.0 1.1 1 0 0 1 1 1 1 HU domain fused to wHTH, Ig, or Glycine-rich motif HU-CCDC81_euk_2 PF18289.1 GAJ45967.1 - 0.008 16.3 0.0 0.014 15.6 0.0 1.4 1 0 0 1 1 1 1 CCDC81 eukaryotic HU domain 2 DDE_3 PF13358.6 GAJ45968.1 - 0.0029 17.3 0.0 0.0029 17.3 0.0 1.1 1 0 0 1 1 1 1 DDE superfamily endonuclease DNA_mis_repair PF01119.19 GAJ45971.1 - 6.1e-30 103.3 0.0 1.2e-29 102.4 0.0 1.5 1 0 0 1 1 1 1 DNA mismatch repair protein, C-terminal domain HATPase_c_3 PF13589.6 GAJ45971.1 - 9.8e-14 51.3 0.0 1.7e-13 50.6 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.26 GAJ45971.1 - 9.9e-08 32.5 0.0 2.1e-07 31.5 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MutL_C PF08676.11 GAJ45972.1 - 2.4e-29 102.0 0.0 3e-29 101.7 0.0 1.1 1 0 0 1 1 1 1 MutL C terminal dimerisation domain Tox-REase-3 PF15647.6 GAJ45973.1 - 0.0016 18.7 0.3 0.0016 18.7 0.3 2.0 2 0 0 2 2 2 1 Restriction endonuclease fold toxin 3 Phage_int_SAM_5 PF13102.6 GAJ45974.1 - 0.063 13.6 1.8 0.068 13.5 1.8 1.0 1 0 0 1 1 1 0 Phage integrase SAM-like domain DUF4096 PF13340.6 GAJ45975.1 - 0.00069 19.8 0.0 0.0011 19.2 0.0 1.3 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) Vpu PF00558.19 GAJ45975.1 - 0.041 13.6 0.0 0.069 12.9 0.0 1.3 1 0 0 1 1 1 0 Vpu protein zf-H2C2_2 PF13465.6 GAJ45976.1 - 0.0069 16.8 0.3 0.0069 16.8 0.3 2.3 2 0 0 2 2 2 1 Zinc-finger double domain UPF0515 PF15135.6 GAJ45976.1 - 2.1 7.6 10.1 2.5 7.4 10.1 1.1 1 0 0 1 1 1 0 Uncharacterised protein UPF0515 SBP_bac_5 PF00496.22 GAJ45977.1 - 1.1e-43 149.6 0.4 1.7e-43 149.1 0.4 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle DUF1033 PF06279.11 GAJ45977.1 - 0.98 9.6 6.4 6.3 7.0 0.2 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF1033) Redoxin PF08534.10 GAJ45978.1 - 1e-06 28.5 0.0 4.2e-06 26.5 0.0 1.9 1 1 0 1 1 1 1 Redoxin Thioredoxin PF00085.20 GAJ45978.1 - 2.9e-06 27.2 0.0 0.00011 22.1 0.0 2.3 1 1 0 1 1 1 1 Thioredoxin AhpC-TSA PF00578.21 GAJ45978.1 - 3.1e-06 27.1 0.0 8.1e-06 25.8 0.0 1.7 1 1 0 1 1 1 1 AhpC/TSA family Thioredoxin_8 PF13905.6 GAJ45978.1 - 3.7e-06 27.2 0.0 2e-05 24.8 0.0 2.3 1 1 0 1 1 1 1 Thioredoxin-like Thioredoxin_9 PF14595.6 GAJ45978.1 - 0.0014 18.4 0.0 0.0036 17.1 0.0 1.6 1 1 0 1 1 1 1 Thioredoxin TraF PF13728.6 GAJ45978.1 - 0.0048 16.8 0.0 0.011 15.6 0.0 1.6 1 0 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin_2 PF13098.6 GAJ45978.1 - 0.0059 17.1 0.0 0.017 15.6 0.0 1.8 1 0 0 1 1 1 1 Thioredoxin-like domain dCMP_cyt_deam_1 PF00383.23 GAJ45979.1 - 1.5e-07 31.2 0.9 1.9e-07 30.9 0.9 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region LmjF365940-deam PF14421.6 GAJ45979.1 - 0.00076 19.1 0.7 0.0025 17.5 0.1 1.8 1 1 1 2 2 2 1 A distinct subfamily of CDD/CDA-like deaminases dCMP_cyt_deam_2 PF08211.12 GAJ45979.1 - 0.0034 17.6 0.0 0.0043 17.3 0.0 1.2 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region Ribosomal_L28 PF00830.19 GAJ45979.1 - 0.1 12.8 0.2 0.2 11.9 0.0 1.5 2 0 0 2 2 2 0 Ribosomal L28 family DUF678 PF05077.12 GAJ45979.1 - 0.12 12.5 2.9 0.37 11.0 2.9 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF678) HSP70 PF00012.20 GAJ45983.1 - 2.2e-264 878.2 9.6 2.5e-264 878.1 9.6 1.0 1 0 0 1 1 1 1 Hsp70 protein MreB_Mbl PF06723.13 GAJ45983.1 - 1.4e-14 53.7 11.6 1.4e-13 50.4 0.5 2.9 3 1 0 3 3 3 2 MreB/Mbl protein FtsA PF14450.6 GAJ45983.1 - 0.0014 19.0 2.8 1.4 9.3 0.0 3.3 3 0 0 3 3 3 2 Cell division protein FtsA DUF3287 PF11690.8 GAJ45983.1 - 0.08 12.7 3.9 0.3 10.8 3.1 2.3 3 0 0 3 3 3 0 Protein of unknown function (DUF3287) DeoC PF01791.9 GAJ45983.1 - 0.083 12.5 0.1 8.6 5.9 0.0 2.4 2 0 0 2 2 2 0 DeoC/LacD family aldolase TRPM_tetra PF16519.5 GAJ45983.1 - 0.23 11.6 2.9 0.75 9.9 2.9 1.8 1 0 0 1 1 1 0 Tetramerisation domain of TRPM HTH_28 PF13518.6 GAJ45984.1 - 0.027 14.6 0.0 0.04 14.1 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain Terminase_5 PF06056.12 GAJ45984.1 - 0.04 13.8 0.0 0.061 13.2 0.0 1.4 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) HTH_23 PF13384.6 GAJ45984.1 - 0.081 12.7 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain DUF3347 PF11827.8 GAJ45986.1 - 0.053 13.7 6.7 0.36 11.0 1.9 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3347) P4Ha_N PF08336.11 GAJ45986.1 - 0.097 12.7 2.4 0.1 12.6 0.1 2.2 2 1 0 2 2 2 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region Acp26Ab PF05777.12 GAJ45987.1 - 0.068 13.8 0.0 0.087 13.5 0.0 1.3 1 0 0 1 1 1 0 Drosophila accessory gland-specific peptide 26Ab (Acp26Ab) GFO_IDH_MocA PF01408.22 GAJ45988.1 - 5.3e-17 62.8 0.1 7e-17 62.4 0.1 1.2 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold TrkA_N PF02254.18 GAJ45988.1 - 0.00022 21.5 0.0 0.0044 17.3 0.0 2.7 3 0 0 3 3 3 1 TrkA-N domain NAD_binding_2 PF03446.15 GAJ45988.1 - 0.0013 18.9 0.0 0.0019 18.4 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 GAJ45988.1 - 0.012 16.1 0.0 0.023 15.2 0.0 1.5 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent AAA_18 PF13238.6 GAJ45989.1 - 1.9e-06 28.4 0.4 4.1e-06 27.4 0.4 1.6 1 1 0 1 1 1 1 AAA domain Guanylate_kin PF00625.21 GAJ45989.1 - 2.1e-06 27.6 0.1 2.7e-06 27.2 0.1 1.3 1 1 0 1 1 1 1 Guanylate kinase Thymidylate_kin PF02223.17 GAJ45989.1 - 0.001 18.8 0.9 0.24 11.1 0.1 2.2 2 0 0 2 2 2 2 Thymidylate kinase dNK PF01712.19 GAJ45989.1 - 0.025 14.4 2.7 2.1 8.1 0.3 2.2 1 1 1 2 2 2 0 Deoxynucleoside kinase AAA_33 PF13671.6 GAJ45989.1 - 0.043 14.0 0.3 0.6 10.3 0.0 2.3 2 1 0 2 2 2 0 AAA domain Zeta_toxin PF06414.12 GAJ45989.1 - 0.5 9.6 1.9 1.7 7.9 1.9 1.8 1 1 0 1 1 1 0 Zeta toxin Cytidylate_kin2 PF13189.6 GAJ45989.1 - 0.52 10.4 2.0 5.7 7.0 2.0 2.5 1 1 0 1 1 1 0 Cytidylate kinase-like family Rubrerythrin PF02915.17 GAJ45990.1 - 1e-27 97.2 1.8 2.1e-27 96.2 1.8 1.5 1 1 0 1 1 1 1 Rubrerythrin Ferritin PF00210.24 GAJ45990.1 - 7.4e-09 35.7 0.3 0.0028 17.6 0.5 2.1 1 1 1 2 2 2 2 Ferritin-like domain PRD1_DD PF11087.8 GAJ45991.1 - 0.059 13.1 0.0 0.097 12.4 0.0 1.4 2 0 0 2 2 2 0 PRD1 phage membrane DNA delivery HAD PF12710.7 GAJ45995.1 - 9.3e-07 29.4 0.2 4.9e-05 23.8 0.2 2.3 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 GAJ45995.1 - 0.04 14.2 0.0 0.06 13.6 0.0 1.2 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 GAJ45995.1 - 0.17 11.6 0.2 5.8 6.6 0.0 2.7 2 1 1 3 3 3 0 haloacid dehalogenase-like hydrolase Aminotran_1_2 PF00155.21 GAJ45996.1 - 4.4e-63 213.6 0.0 5.2e-63 213.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 GAJ45996.1 - 0.00078 18.9 0.0 0.0012 18.3 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 GAJ45996.1 - 0.0017 17.0 0.0 0.0024 16.5 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_MocR PF12897.7 GAJ45996.1 - 0.11 11.2 0.0 0.16 10.7 0.0 1.1 1 0 0 1 1 1 0 Alanine-glyoxylate amino-transferase Aminotran_5 PF00266.19 GAJ45996.1 - 0.12 11.3 0.0 0.18 10.7 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class-V HTH_Tnp_IS630 PF01710.16 GAJ45997.1 - 9.2e-06 25.7 0.0 1e-05 25.6 0.0 1.0 1 0 0 1 1 1 1 Transposase HTH_29 PF13551.6 GAJ45997.1 - 0.013 15.5 0.1 0.015 15.3 0.1 1.1 1 0 0 1 1 1 0 Winged helix-turn helix HTH_28 PF13518.6 GAJ45997.1 - 0.059 13.5 0.1 0.07 13.3 0.1 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.6 GAJ45997.1 - 0.06 13.2 0.0 0.071 12.9 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain Ribosomal_L32p PF01783.23 GAJ45998.1 - 9.7e-20 70.6 5.8 1.3e-19 70.2 5.8 1.1 1 0 0 1 1 1 1 Ribosomal L32p protein family FA_synthesis PF02504.15 GAJ45999.1 - 1.2e-86 290.7 0.0 1.4e-86 290.5 0.0 1.0 1 0 0 1 1 1 1 Fatty acid synthesis protein Thioredoxin_4 PF13462.6 GAJ46000.1 - 5.6e-09 36.4 0.0 8.4e-09 35.8 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 GAJ46000.1 - 0.00046 20.6 0.2 0.0033 17.8 0.0 2.4 2 1 0 2 2 2 1 Thioredoxin-like domain Pyr_redox_2 PF07992.14 GAJ46002.1 - 1.1e-24 87.2 0.0 1.3e-24 87.0 0.0 1.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 GAJ46002.1 - 7.5e-22 77.9 0.0 5.7e-19 68.5 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 GAJ46002.1 - 5.4e-10 39.7 0.6 9e-09 35.8 0.0 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FMO-like PF00743.19 GAJ46002.1 - 1.1e-07 30.6 0.4 2e-06 26.5 0.0 2.0 2 0 0 2 2 2 1 Flavin-binding monooxygenase-like HI0933_like PF03486.14 GAJ46002.1 - 1e-06 27.8 0.4 0.0015 17.3 0.4 3.0 2 1 1 3 3 3 2 HI0933-like protein K_oxygenase PF13434.6 GAJ46002.1 - 0.00025 20.3 0.3 0.0041 16.3 0.0 2.1 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) FAD_oxidored PF12831.7 GAJ46002.1 - 0.00044 19.7 0.0 0.046 13.1 0.0 2.9 2 1 1 3 3 3 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 GAJ46002.1 - 0.00072 18.9 0.8 0.81 8.9 0.7 2.4 3 0 0 3 3 3 2 FAD binding domain DAO PF01266.24 GAJ46002.1 - 0.0022 17.6 0.9 2.3 7.7 0.0 2.9 2 1 0 3 3 3 2 FAD dependent oxidoreductase NAD_binding_7 PF13241.6 GAJ46002.1 - 0.0029 18.0 0.1 0.035 14.6 0.0 2.3 2 0 0 2 2 2 1 Putative NAD(P)-binding NAD_binding_8 PF13450.6 GAJ46002.1 - 0.0035 17.5 2.2 0.0059 16.8 0.2 2.3 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 GAJ46002.1 - 0.0044 16.3 0.1 0.065 12.5 0.1 2.1 2 0 0 2 2 2 1 Thi4 family Oxidored_nitro PF00148.19 GAJ46002.1 - 0.014 14.2 0.0 0.025 13.3 0.0 1.4 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase FAD_binding_2 PF00890.24 GAJ46002.1 - 0.059 12.5 1.4 1.9 7.4 0.1 3.0 2 1 0 3 3 3 0 FAD binding domain ELFV_dehydrog PF00208.21 GAJ46002.1 - 0.21 11.3 0.0 1.5 8.5 0.0 2.1 1 1 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Npun_R1517 PF18068.1 GAJ46003.1 - 0.0011 19.2 1.7 0.14 12.5 0.5 2.7 1 1 1 2 2 2 2 Npun R1517 Adeno_E1B_19K PF01691.16 GAJ46003.1 - 0.052 13.1 0.5 0.13 11.8 0.3 1.9 1 1 0 1 1 1 0 Adenovirus E1B 19K protein / small t-antigen FoP_duplication PF13865.6 GAJ46003.1 - 0.21 12.2 4.6 0.12 13.0 2.3 1.7 2 0 0 2 2 2 0 C-terminal duplication domain of Friend of PRMT1 Mannitol_dh PF01232.23 GAJ46003.1 - 0.98 9.6 4.6 0.48 10.6 0.3 2.3 1 1 0 2 2 2 0 Mannitol dehydrogenase Rossmann domain Noelin-1 PF12308.8 GAJ46003.1 - 2.9 7.9 9.0 5.4 7.1 1.7 3.0 2 1 0 2 2 2 0 Neurogenesis glycoprotein Nucleic_acid_bd PF13820.6 GAJ46003.1 - 6 6.7 10.8 0.79 9.6 0.3 3.2 2 2 1 3 3 3 0 Putative nucleic acid-binding region H_PPase PF03030.16 GAJ46004.1 - 1.7e-246 820.0 42.8 2e-246 819.8 42.8 1.0 1 0 0 1 1 1 1 Inorganic H+ pyrophosphatase IRS PF02174.17 GAJ46005.1 - 0.12 12.3 0.1 0.17 11.8 0.1 1.2 1 0 0 1 1 1 0 PTB domain (IRS-1 type) T2SSF PF00482.23 GAJ46008.1 - 3.5e-21 75.5 0.1 5.4e-11 42.5 0.0 2.2 2 0 0 2 2 2 2 Type II secretion system (T2SS), protein F T2SSE PF00437.20 GAJ46009.1 - 8.2e-66 221.9 0.1 1.5e-65 221.0 0.0 1.4 2 0 0 2 2 2 1 Type II/IV secretion system protein T2SSE_N PF05157.15 GAJ46009.1 - 1.5e-09 38.1 0.1 3e-09 37.1 0.1 1.5 1 0 0 1 1 1 1 Type II secretion system (T2SS), protein E, N-terminal domain AAA_14 PF13173.6 GAJ46009.1 - 6.1e-05 23.1 0.0 0.00017 21.6 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 GAJ46009.1 - 0.00021 21.7 0.1 0.00056 20.3 0.1 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.27 GAJ46009.1 - 0.001 19.6 0.0 0.0034 17.9 0.0 2.0 2 0 0 2 2 2 1 ABC transporter Rad17 PF03215.15 GAJ46009.1 - 0.0012 18.8 0.0 0.0029 17.5 0.0 1.6 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_22 PF13401.6 GAJ46009.1 - 0.0016 18.7 0.0 0.0057 16.9 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.6 GAJ46009.1 - 0.0042 17.6 0.1 0.011 16.2 0.1 1.7 1 0 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 GAJ46009.1 - 0.0054 16.7 0.0 0.011 15.7 0.0 1.5 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_7 PF12775.7 GAJ46009.1 - 0.0086 15.6 0.0 0.016 14.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_30 PF13604.6 GAJ46009.1 - 0.009 15.7 0.0 0.02 14.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_11 PF13086.6 GAJ46009.1 - 0.011 15.5 0.0 0.02 14.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 GAJ46009.1 - 0.046 13.7 0.1 0.094 12.7 0.1 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 GAJ46009.1 - 0.052 13.9 0.0 0.1 13.0 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain AAA_19 PF13245.6 GAJ46009.1 - 0.059 13.7 1.4 0.14 12.5 0.0 2.2 2 1 0 2 2 2 0 AAA domain ResIII PF04851.15 GAJ46009.1 - 0.081 12.9 0.0 0.18 11.8 0.0 1.5 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_29 PF13555.6 GAJ46009.1 - 0.15 11.9 0.0 0.37 10.6 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain NTPase_1 PF03266.15 GAJ46009.1 - 0.19 11.6 0.6 5.2 6.9 0.1 2.5 1 1 1 2 2 2 0 NTPase MlaC PF05494.12 GAJ46010.1 - 1.2e-12 47.9 0.1 1.7e-12 47.4 0.1 1.2 1 0 0 1 1 1 1 MlaC protein DUF3161 PF11362.8 GAJ46010.1 - 0.032 14.2 0.2 0.073 13.1 0.1 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3161) Peptidase_C26 PF07722.13 GAJ46011.1 - 7.4e-54 182.8 0.0 9e-54 182.5 0.0 1.0 1 0 0 1 1 1 1 Peptidase C26 GATase PF00117.28 GAJ46011.1 - 2.6e-16 59.9 0.1 4.1e-16 59.3 0.1 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.14 GAJ46011.1 - 0.0039 16.8 0.4 0.0053 16.4 0.4 1.5 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DDE_Tnp_1_2 PF13586.6 GAJ46012.1 - 0.00067 20.0 0.0 0.00074 19.8 0.0 1.1 1 0 0 1 1 1 1 Transposase DDE domain SIT PF15330.6 GAJ46014.1 - 0.36 11.3 3.0 1.2 9.6 3.0 1.8 1 1 0 1 1 1 0 SHP2-interacting transmembrane adaptor protein, SIT GTP_EFTU PF00009.27 GAJ46015.1 - 3.1e-61 206.3 0.1 4.1e-61 205.9 0.1 1.1 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.17 GAJ46015.1 - 2.7e-30 104.9 0.0 5e-30 104.1 0.0 1.4 1 0 0 1 1 1 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.25 GAJ46015.1 - 1.7e-17 63.6 6.2 4.3e-17 62.3 6.2 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 GAJ46015.1 - 7.2e-05 22.9 0.0 0.00015 21.8 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 GAJ46015.1 - 0.0081 16.1 0.0 0.024 14.6 0.0 1.8 2 0 0 2 2 2 1 RsgA GTPase cobW PF02492.19 GAJ46015.1 - 0.022 14.3 0.5 0.052 13.1 0.0 1.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain PduV-EutP PF10662.9 GAJ46015.1 - 0.035 13.9 0.3 9.5 6.0 0.1 2.3 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation ATP_bind_1 PF03029.17 GAJ46015.1 - 0.22 11.3 0.8 3 7.5 0.0 2.2 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein Ribosomal_S10 PF00338.22 GAJ46016.1 - 1.3e-25 89.4 0.0 1.5e-25 89.2 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e Ribosomal_L3 PF00297.22 GAJ46017.1 - 2.1e-17 63.1 2.1 3.6e-15 55.8 1.0 2.3 1 1 1 2 2 2 2 Ribosomal protein L3 Ribosomal_L4 PF00573.22 GAJ46018.1 - 2e-56 190.7 0.0 2.3e-56 190.5 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L23 PF00276.20 GAJ46019.1 - 7.3e-23 80.7 2.1 9.2e-23 80.4 2.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L23 Spy1 PF11357.8 GAJ46019.1 - 0.047 14.0 0.1 0.06 13.6 0.1 1.2 1 0 0 1 1 1 0 Cell cycle regulatory protein Ribosomal_L2_C PF03947.18 GAJ46020.1 - 5.8e-57 191.3 0.5 9.6e-57 190.6 0.5 1.4 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.23 GAJ46020.1 - 1.6e-21 76.0 0.0 4.2e-21 74.7 0.0 1.7 1 0 0 1 1 1 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_S19 PF00203.21 GAJ46021.1 - 6.1e-37 125.4 0.1 6.8e-37 125.2 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S19 Ribosomal_L22 PF00237.19 GAJ46022.1 - 2.7e-19 69.3 0.0 3e-19 69.1 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Ribosomal_S3_C PF00189.20 GAJ46023.1 - 2e-34 118.0 0.3 2.9e-34 117.4 0.3 1.3 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.17 GAJ46023.1 - 1.9e-12 46.9 0.0 3.6e-12 45.9 0.0 1.5 1 0 0 1 1 1 1 KH domain GerPC PF10737.9 GAJ46023.1 - 0.091 12.8 0.0 0.14 12.2 0.0 1.3 1 0 0 1 1 1 0 Spore germination protein GerPC MRP-S24 PF14955.6 GAJ46023.1 - 0.14 12.1 0.0 0.25 11.3 0.0 1.4 1 0 0 1 1 1 0 Mitochondrial ribosome subunit S24 Ribosomal_L16 PF00252.18 GAJ46024.1 - 4.1e-44 149.8 0.4 4.7e-44 149.6 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e Ribosomal_L29 PF00831.23 GAJ46025.1 - 1.6e-06 28.0 0.5 2.2e-06 27.5 0.5 1.2 1 0 0 1 1 1 1 Ribosomal L29 protein Ribosomal_S17 PF00366.20 GAJ46026.1 - 3.8e-26 91.0 1.8 4.3e-26 90.8 1.8 1.0 1 0 0 1 1 1 1 Ribosomal protein S17 Ribosomal_L14 PF00238.19 GAJ46027.1 - 5.6e-46 155.6 1.3 6.2e-46 155.4 1.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e ribosomal_L24 PF17136.4 GAJ46028.1 - 2e-15 56.9 0.0 3.6e-15 56.1 0.0 1.4 1 0 0 1 1 1 1 Ribosomal proteins 50S L24/mitochondrial 39S L24 KOW PF00467.29 GAJ46028.1 - 1.1e-07 31.5 0.8 2.8e-07 30.2 0.8 1.7 1 0 0 1 1 1 1 KOW motif SRR1 PF07985.12 GAJ46028.1 - 0.19 11.8 0.0 0.31 11.1 0.0 1.3 1 0 0 1 1 1 0 SRR1 Ribosomal_L5_C PF00673.21 GAJ46029.1 - 3.7e-35 120.0 0.0 5.5e-35 119.4 0.0 1.3 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.19 GAJ46029.1 - 1.6e-18 66.8 0.0 2.3e-18 66.3 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L5 Endosulfine PF04667.17 GAJ46029.1 - 0.029 14.5 0.0 0.05 13.7 0.0 1.4 1 0 0 1 1 1 0 cAMP-regulated phosphoprotein/endosulfine conserved region Ribosomal_S14 PF00253.21 GAJ46030.1 - 1.1e-23 82.7 1.1 1.1e-23 82.7 1.1 1.9 2 0 0 2 2 2 1 Ribosomal protein S14p/S29e Ribosomal_S8 PF00410.19 GAJ46031.1 - 3.9e-30 104.4 0.1 4.3e-30 104.3 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S8 YjhX_toxin PF09857.9 GAJ46031.1 - 0.06 13.3 0.1 0.95 9.5 0.1 2.1 1 1 0 1 1 1 0 Putative toxin of bacterial toxin-antitoxin pair Ribosomal_L6 PF00347.23 GAJ46032.1 - 9.4e-10 39.0 0.1 1.4e-07 32.0 0.0 2.7 2 1 1 3 3 3 2 Ribosomal protein L6 Ribosomal_L18p PF00861.22 GAJ46033.1 - 4.8e-40 136.5 0.8 5.3e-40 136.4 0.8 1.0 1 0 0 1 1 1 1 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Ribosomal_L5e PF17144.4 GAJ46033.1 - 0.0075 16.3 0.2 0.0085 16.1 0.2 1.1 1 0 0 1 1 1 1 Ribosomal large subunit proteins 60S L5, and 50S L18 RraA-like PF03737.15 GAJ46033.1 - 0.035 14.3 0.1 0.051 13.7 0.1 1.4 1 1 0 1 1 1 0 Aldolase/RraA Chordopox_A33R PF05966.12 GAJ46033.1 - 0.063 12.5 0.1 0.072 12.4 0.1 1.4 1 1 0 1 1 1 0 Chordopoxvirus A33R protein Ribosomal_S5 PF00333.20 GAJ46034.1 - 2.5e-26 91.5 5.1 3.7e-26 90.9 5.1 1.3 1 0 0 1 1 1 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.15 GAJ46035.1 - 9.2e-19 66.7 0.1 1.1e-18 66.5 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Cas_Csa5 PF09702.10 GAJ46035.1 - 0.055 13.7 0.0 0.059 13.6 0.0 1.1 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Csa5) Ribosomal_L30 PF00327.20 GAJ46036.1 - 1.3e-12 47.4 0.5 1.4e-12 47.2 0.5 1.0 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_L27A PF00828.19 GAJ46037.1 - 2.7e-30 105.7 0.0 3.2e-30 105.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A SecY PF00344.20 GAJ46038.1 - 7.2e-85 284.9 17.8 9e-85 284.6 17.8 1.1 1 0 0 1 1 1 1 SecY translocase ADK PF00406.22 GAJ46039.1 - 1.4e-30 106.4 0.0 1.7e-30 106.1 0.0 1.1 1 0 0 1 1 1 1 Adenylate kinase AAA_17 PF13207.6 GAJ46039.1 - 3.3e-16 59.9 0.0 1.1e-15 58.2 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 GAJ46039.1 - 4.1e-10 40.3 0.0 1.1e-09 38.9 0.0 1.6 1 1 1 2 2 2 1 AAA domain Thymidylate_kin PF02223.17 GAJ46039.1 - 0.00024 20.8 1.9 0.076 12.7 0.0 2.9 1 1 1 3 3 3 2 Thymidylate kinase AAA_33 PF13671.6 GAJ46039.1 - 0.052 13.7 0.1 0.55 10.4 0.1 2.4 1 1 1 2 2 2 0 AAA domain Cytidylate_kin PF02224.18 GAJ46039.1 - 0.065 13.0 0.0 0.11 12.3 0.0 1.5 1 0 0 1 1 1 0 Cytidylate kinase DIT1_PvcA PF05141.12 GAJ46039.1 - 0.077 12.5 0.0 0.12 11.8 0.0 1.2 1 0 0 1 1 1 0 Pyoverdine/dityrosine biosynthesis protein UPF0004 PF00919.20 GAJ46042.1 - 7.6e-12 45.1 0.1 9.8e-12 44.8 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 URO-D PF01208.17 GAJ46042.1 - 0.041 13.0 0.0 0.044 12.9 0.0 1.0 1 0 0 1 1 1 0 Uroporphyrinogen decarboxylase (URO-D) Radical_SAM PF04055.21 GAJ46043.1 - 6e-19 69.0 0.0 1.3e-18 67.9 0.0 1.6 1 1 0 1 1 1 1 Radical SAM superfamily Peptidase_M20 PF01546.28 GAJ46044.1 - 4.5e-35 121.2 0.0 5.4e-35 121.0 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 GAJ46044.1 - 3.4e-15 55.9 0.0 2.3e-14 53.2 0.0 2.1 2 0 0 2 2 2 1 Peptidase dimerisation domain NifU PF01106.17 GAJ46045.1 - 3.5e-24 84.7 0.6 4.8e-24 84.3 0.0 1.5 2 0 0 2 2 2 1 NifU-like domain Nfu_N PF08712.11 GAJ46045.1 - 2.3e-18 66.0 0.0 3.9e-18 65.3 0.0 1.4 1 0 0 1 1 1 1 Scaffold protein Nfu/NifU N terminal Phage_endo_I PF05367.11 GAJ46046.1 - 0.079 12.6 0.0 0.087 12.4 0.0 1.1 1 0 0 1 1 1 0 Phage endonuclease I Glucosaminidase PF01832.20 GAJ46048.1 - 1.4e-12 47.9 0.0 2.2e-12 47.3 0.0 1.2 1 0 0 1 1 1 1 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase Biotin_lipoyl PF00364.22 GAJ46049.1 - 1.3e-16 60.2 0.1 2e-16 59.6 0.1 1.3 1 0 0 1 1 1 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 GAJ46049.1 - 4.4e-06 26.4 0.1 0.0063 16.3 0.0 2.5 2 0 0 2 2 2 2 Biotin-lipoyl like RnfC_N PF13375.6 GAJ46049.1 - 3e-05 23.9 0.0 5.7e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 RnfC Barrel sandwich hybrid domain NQRA PF05896.11 GAJ46049.1 - 0.0007 19.1 0.0 0.001 18.5 0.0 1.2 1 0 0 1 1 1 1 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) GCV_H PF01597.19 GAJ46049.1 - 0.043 13.7 0.0 0.082 12.8 0.0 1.4 1 0 0 1 1 1 0 Glycine cleavage H-protein Sld3_N PF18523.1 GAJ46050.1 - 0.0061 16.7 0.4 0.0092 16.1 0.4 1.3 1 0 0 1 1 1 1 Sld3 N-terminal domain DNA_topoisoIV PF00521.20 GAJ46051.1 - 4.8 6.0 8.0 0.31 9.9 2.1 2.0 3 0 0 3 3 3 0 DNA gyrase/topoisomerase IV, subunit A eIF-1a PF01176.19 GAJ46052.1 - 5.8e-19 67.7 0.0 6.5e-19 67.5 0.0 1.0 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 DUF4537 PF15057.6 GAJ46052.1 - 0.0024 17.9 0.0 0.0027 17.7 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4537) RsgA_N PF16745.5 GAJ46052.1 - 0.0039 16.9 0.0 0.0053 16.5 0.0 1.3 1 0 0 1 1 1 1 RsgA N-terminal domain Peptidase_M99_m PF17130.4 GAJ46052.1 - 0.12 12.3 0.0 0.14 12.1 0.0 1.2 1 0 0 1 1 1 0 beta-barrel domain of carboxypeptidase M99 Tubulin PF00091.25 GAJ46055.1 - 5.3e-38 131.2 0.0 9.8e-38 130.3 0.0 1.5 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 GAJ46055.1 - 3.4e-24 85.0 0.3 7.3e-24 83.9 0.3 1.6 1 0 0 1 1 1 1 FtsZ family, C-terminal domain Tubulin_2 PF13809.6 GAJ46055.1 - 0.026 13.7 6.8 0.17 11.0 0.0 2.6 1 1 1 2 2 2 0 Tubulin like FtsA PF14450.6 GAJ46056.1 - 1e-23 83.7 0.0 3.2e-18 66.0 0.0 2.1 2 0 0 2 2 2 2 Cell division protein FtsA SHS2_FTSA PF02491.20 GAJ46056.1 - 7.1e-11 42.4 0.0 1.6e-10 41.3 0.0 1.6 1 0 0 1 1 1 1 SHS2 domain inserted in FTSA MreB_Mbl PF06723.13 GAJ46056.1 - 5.6e-09 35.3 0.0 1.3e-08 34.1 0.0 1.5 1 0 0 1 1 1 1 MreB/Mbl protein PilM_2 PF11104.8 GAJ46056.1 - 7.7e-07 28.4 0.0 0.034 13.2 0.0 2.3 2 0 0 2 2 2 2 Type IV pilus assembly protein PilM; FGGY_C PF02782.16 GAJ46056.1 - 2.3e-06 27.5 0.0 9.3e-06 25.5 0.0 1.8 2 0 0 2 2 2 1 FGGY family of carbohydrate kinases, C-terminal domain Actin PF00022.19 GAJ46056.1 - 0.048 12.3 0.1 2.3 6.8 0.0 2.3 1 1 1 2 2 2 0 Actin POTRA_1 PF08478.10 GAJ46057.1 - 1.7e-14 53.9 0.0 3e-14 53.0 0.0 1.4 1 0 0 1 1 1 1 POTRA domain, FtsQ-type FtsQ PF03799.15 GAJ46057.1 - 4.2e-08 34.0 0.0 7e-08 33.3 0.0 1.4 1 0 0 1 1 1 1 Cell division protein FtsQ HTH_23 PF13384.6 GAJ46058.1 - 1.9e-06 27.5 0.0 4.5e-06 26.3 0.0 1.5 2 0 0 2 2 2 1 Homeodomain-like domain Sigma70_r4_2 PF08281.12 GAJ46058.1 - 0.00016 21.3 0.1 0.00082 19.0 0.0 1.9 2 0 0 2 2 2 1 Sigma-70, region 4 Terminase_5 PF06056.12 GAJ46058.1 - 0.00069 19.5 0.0 0.0011 18.8 0.0 1.3 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_28 PF13518.6 GAJ46058.1 - 0.0043 17.2 0.0 0.0074 16.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_psq PF05225.16 GAJ46058.1 - 0.0078 15.9 0.1 0.03 14.0 0.0 1.8 2 0 0 2 2 2 1 helix-turn-helix, Psq domain HTH_38 PF13936.6 GAJ46058.1 - 0.0099 15.6 0.0 0.018 14.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_4 PF13613.6 GAJ46058.1 - 0.026 14.2 0.0 0.036 13.8 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease HTH_Tnp_ISL3 PF13542.6 GAJ46058.1 - 0.037 13.4 0.1 0.081 12.3 0.0 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 P22_Cro PF14549.6 GAJ46058.1 - 0.06 13.2 0.1 0.16 11.9 0.0 1.7 2 0 0 2 2 2 0 DNA-binding transcriptional regulator Cro HTH_AsnC-type PF13404.6 GAJ46058.1 - 0.1 12.4 0.0 0.17 11.8 0.0 1.3 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Sigma70_ECF PF07638.11 GAJ46058.1 - 0.17 11.8 0.0 0.19 11.6 0.0 1.1 1 0 0 1 1 1 0 ECF sigma factor Homez PF11569.8 GAJ46059.1 - 0.0011 18.4 0.0 0.0014 18.0 0.0 1.3 1 0 0 1 1 1 1 Homeodomain leucine-zipper encoding, Homez HTH_Tnp_IS630 PF01710.16 GAJ46059.1 - 0.0025 17.8 0.4 0.0025 17.8 0.4 1.6 2 0 0 2 2 2 1 Transposase HTH_33 PF13592.6 GAJ46059.1 - 0.3 10.8 0.3 0.3 10.8 0.3 1.7 2 0 0 2 2 2 0 Winged helix-turn helix FtsK_SpoIIIE PF01580.18 GAJ46060.1 - 2e-60 204.2 0.1 3.4e-60 203.4 0.1 1.4 1 0 0 1 1 1 1 FtsK/SpoIIIE family FtsK_gamma PF09397.10 GAJ46060.1 - 9.5e-28 95.8 0.7 2.8e-27 94.3 0.7 1.9 1 0 0 1 1 1 1 Ftsk gamma domain FtsK_alpha PF17854.1 GAJ46060.1 - 4.8e-26 90.9 0.0 9.5e-26 89.9 0.0 1.5 1 0 0 1 1 1 1 FtsK alpha domain FtsK_4TM PF13491.6 GAJ46060.1 - 2.1e-16 60.1 18.9 3.9e-16 59.2 18.9 1.4 1 1 0 1 1 1 1 4TM region of DNA translocase FtsK/SpoIIIE DUF87 PF01935.17 GAJ46060.1 - 2.5e-05 24.5 0.1 6.2e-05 23.2 0.1 1.6 1 0 0 1 1 1 1 Helicase HerA, central domain AAA_10 PF12846.7 GAJ46060.1 - 2.6e-05 23.3 0.0 0.042 12.8 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain AAA_22 PF13401.6 GAJ46060.1 - 0.0092 16.3 0.3 0.041 14.2 0.1 2.1 2 1 0 2 2 2 1 AAA domain AAA_19 PF13245.6 GAJ46060.1 - 0.018 15.4 0.0 0.056 13.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain TniB PF05621.11 GAJ46060.1 - 0.026 14.0 3.4 7.7 5.9 0.0 3.9 4 0 0 4 4 4 0 Bacterial TniB protein EAP30 PF04157.16 GAJ46060.1 - 0.093 12.0 0.1 0.19 11.0 0.1 1.6 1 1 0 1 1 1 0 EAP30/Vps36 family DUF350 PF03994.14 GAJ46060.1 - 9.1 6.5 8.0 0.25 11.5 0.9 2.2 2 0 0 2 2 2 0 Domain of Unknown Function (DUF350) Ribosomal_L28 PF00830.19 GAJ46061.1 - 1.2e-17 63.8 0.9 1.2e-17 63.8 0.9 1.9 2 1 0 2 2 2 1 Ribosomal L28 family AA_kinase PF00696.28 GAJ46062.1 - 5.5e-20 72.0 0.0 9e-20 71.3 0.0 1.4 1 0 0 1 1 1 1 Amino acid kinase family EF_TS PF00889.19 GAJ46063.1 - 3.5e-54 183.6 0.0 4.7e-54 183.2 0.0 1.2 1 0 0 1 1 1 1 Elongation factor TS Atypical_Card PF18461.1 GAJ46063.1 - 0.0074 16.5 0.1 0.11 12.7 0.0 2.2 2 0 0 2 2 2 1 Atypical caspase recruitment domain UBA PF00627.31 GAJ46063.1 - 0.026 14.4 0.0 0.049 13.6 0.0 1.5 1 0 0 1 1 1 0 UBA/TS-N domain GerD PF17898.1 GAJ46063.1 - 0.094 12.7 0.9 2.6 8.0 0.2 2.4 2 0 0 2 2 2 0 Spore germination GerD central core domain Ribosomal_S2 PF00318.20 GAJ46064.1 - 8.1e-82 273.6 0.0 9.7e-82 273.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S2 ABC_tran_CTD PF16326.5 GAJ46064.1 - 0.044 14.0 0.6 1.4 9.2 0.1 2.6 2 0 0 2 2 2 0 ABC transporter C-terminal domain HTH_38 PF13936.6 GAJ46065.1 - 0.025 14.4 0.0 0.039 13.7 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.6 GAJ46065.1 - 0.041 13.7 0.0 0.07 13.0 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HTH_psq PF05225.16 GAJ46065.1 - 0.056 13.2 0.2 0.11 12.3 0.2 1.7 1 1 0 1 1 1 0 helix-turn-helix, Psq domain HTH_6 PF01418.17 GAJ46065.1 - 0.15 12.1 0.1 0.23 11.5 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family tRNA_m1G_MT PF01746.21 GAJ46068.1 - 1.1e-43 149.3 0.0 1.3e-43 149.0 0.0 1.0 1 0 0 1 1 1 1 tRNA (Guanine-1)-methyltransferase Elong-fact-P_C PF09285.11 GAJ46069.1 - 6.5e-21 73.8 0.0 1.6e-20 72.6 0.0 1.7 1 0 0 1 1 1 1 Elongation factor P, C-terminal EFP_N PF08207.12 GAJ46069.1 - 4.3e-19 68.3 1.2 6.4e-19 67.7 0.0 2.0 3 0 0 3 3 3 1 Elongation factor P (EF-P) KOW-like domain EFP PF01132.20 GAJ46069.1 - 5.7e-14 51.9 0.2 9.6e-14 51.2 0.2 1.4 1 0 0 1 1 1 1 Elongation factor P (EF-P) OB domain ATP_bind_3 PF01171.20 GAJ46070.1 - 4.7e-40 137.3 0.0 7e-40 136.7 0.0 1.2 1 0 0 1 1 1 1 PP-loop family NAD_synthase PF02540.17 GAJ46070.1 - 0.12 11.5 0.0 0.23 10.5 0.0 1.4 1 0 0 1 1 1 0 NAD synthase dUTPase PF00692.19 GAJ46071.1 - 6.7e-28 96.9 0.0 7.9e-28 96.7 0.0 1.0 1 0 0 1 1 1 1 dUTPase Terminase_5 PF06056.12 GAJ46072.1 - 0.058 13.3 0.0 0.098 12.6 0.0 1.4 1 1 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) HTH_28 PF13518.6 GAJ46072.1 - 0.09 12.9 0.0 0.13 12.4 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.6 GAJ46072.1 - 0.093 12.6 0.0 0.13 12.0 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain DUF4092 PF13322.6 GAJ46073.1 - 0.072 13.0 0.0 0.094 12.6 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4092) Exonuc_VII_S PF02609.16 GAJ46074.1 - 0.028 14.5 0.2 0.032 14.3 0.2 1.1 1 0 0 1 1 1 0 Exonuclease VII small subunit SRP54 PF00448.22 GAJ46075.1 - 9.5e-56 188.5 0.0 1.7e-55 187.8 0.0 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.19 GAJ46075.1 - 1.3e-30 105.9 5.7 2.4e-30 105.1 1.9 2.5 2 0 0 2 2 2 1 Signal peptide binding domain SRP54_N PF02881.19 GAJ46075.1 - 1.1e-16 60.8 0.3 3.6e-16 59.1 0.3 2.0 1 0 0 1 1 1 1 SRP54-type protein, helical bundle domain CbiA PF01656.23 GAJ46075.1 - 2.2e-05 24.5 0.0 0.00012 22.1 0.0 2.2 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain ATP_bind_1 PF03029.17 GAJ46075.1 - 4e-05 23.5 0.0 0.00013 21.8 0.0 1.9 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein AAA_22 PF13401.6 GAJ46075.1 - 4.1e-05 23.9 0.1 0.00015 22.0 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 GAJ46075.1 - 0.0016 19.0 0.1 0.0057 17.2 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_31 PF13614.6 GAJ46075.1 - 0.0043 17.0 0.8 0.02 14.8 0.1 2.6 2 1 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.15 GAJ46075.1 - 0.01 15.1 4.0 0.068 12.3 0.1 2.9 2 1 0 3 3 3 0 Anion-transporting ATPase AAA_16 PF13191.6 GAJ46075.1 - 0.013 15.9 0.1 0.027 14.9 0.1 2.0 1 1 0 1 1 1 0 AAA ATPase domain ATPase PF06745.13 GAJ46075.1 - 0.019 14.3 0.0 0.045 13.1 0.0 1.6 1 0 0 1 1 1 0 KaiC Arf PF00025.21 GAJ46075.1 - 0.028 13.9 0.2 0.12 11.8 0.0 2.1 2 0 0 2 2 2 0 ADP-ribosylation factor family DUF2780 PF11075.8 GAJ46075.1 - 0.036 14.2 1.3 19 5.3 0.1 3.3 3 0 0 3 3 3 0 Protein of unknown function VcgC/VcgE (DUF2780) hnRNP_Q_AcD PF18360.1 GAJ46075.1 - 0.042 13.8 0.1 0.13 12.3 0.1 1.8 1 0 0 1 1 1 0 Heterogeneous nuclear ribonucleoprotein Q acidic domain MeaB PF03308.16 GAJ46075.1 - 0.06 12.3 0.1 2.9 6.8 0.0 2.3 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB PduV-EutP PF10662.9 GAJ46075.1 - 0.076 12.8 0.2 0.25 11.1 0.2 1.9 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_25 PF13481.6 GAJ46075.1 - 0.1 12.2 0.1 0.77 9.3 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_7 PF12775.7 GAJ46075.1 - 0.1 12.1 0.0 0.21 11.1 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region MMR_HSR1 PF01926.23 GAJ46075.1 - 0.12 12.5 0.7 1.1 9.3 0.2 2.7 2 1 0 2 2 2 0 50S ribosome-binding GTPase AAA_33 PF13671.6 GAJ46075.1 - 0.13 12.4 0.0 0.26 11.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain HTH_23 PF13384.6 GAJ46076.1 - 2.4e-06 27.2 0.0 2.7e-06 27.0 0.0 1.2 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.6 GAJ46076.1 - 0.00021 21.4 0.0 0.00025 21.1 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.6 GAJ46076.1 - 0.00056 19.6 0.0 0.00086 19.0 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_psq PF05225.16 GAJ46076.1 - 0.0014 18.3 0.0 0.0016 18.1 0.0 1.2 1 0 0 1 1 1 1 helix-turn-helix, Psq domain HTH_7 PF02796.15 GAJ46076.1 - 0.0033 17.5 0.0 0.005 16.9 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase Terminase_5 PF06056.12 GAJ46076.1 - 0.0034 17.2 0.0 0.0037 17.1 0.0 1.1 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) Sigma70_r4_2 PF08281.12 GAJ46076.1 - 0.018 14.7 0.0 0.023 14.4 0.0 1.2 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_29 PF13551.6 GAJ46076.1 - 0.03 14.3 0.0 0.038 14.0 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn helix CENP-B_N PF04218.13 GAJ46076.1 - 0.045 13.4 0.0 0.054 13.1 0.0 1.1 1 0 0 1 1 1 0 CENP-B N-terminal DNA-binding domain Sigma70_ECF PF07638.11 GAJ46076.1 - 0.049 13.5 0.0 0.049 13.5 0.0 1.0 1 0 0 1 1 1 0 ECF sigma factor GerE PF00196.19 GAJ46076.1 - 0.05 13.2 0.0 0.069 12.7 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_6 PF01418.17 GAJ46076.1 - 0.051 13.6 0.0 0.056 13.4 0.0 1.1 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family HTH_Tnp_4 PF13613.6 GAJ46076.1 - 0.052 13.3 0.0 0.069 12.9 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease P22_Cro PF14549.6 GAJ46076.1 - 0.057 13.3 0.0 0.11 12.4 0.0 1.5 2 0 0 2 2 2 0 DNA-binding transcriptional regulator Cro HTH_11 PF08279.12 GAJ46076.1 - 0.085 12.8 0.0 0.1 12.6 0.0 1.2 1 0 0 1 1 1 0 HTH domain HTH_3 PF01381.22 GAJ46076.1 - 0.096 12.8 0.0 0.17 12.0 0.0 1.4 1 1 0 1 1 1 0 Helix-turn-helix DUF3349 PF11829.8 GAJ46076.1 - 0.14 12.9 0.0 0.16 12.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3349) UPF0122 PF04297.14 GAJ46076.1 - 0.15 12.3 0.0 0.15 12.3 0.0 1.1 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like DDE_Tnp_IS1 PF03400.13 GAJ46077.1 - 2.4e-07 31.2 0.1 2.6e-07 31.0 0.1 1.0 1 0 0 1 1 1 1 IS1 transposase Biopterin_H PF00351.21 GAJ46077.1 - 0.092 11.8 0.1 0.1 11.6 0.1 1.0 1 0 0 1 1 1 0 Biopterin-dependent aromatic amino acid hydroxylase Biotin_lipoyl_2 PF13533.6 GAJ46079.1 - 2.7e-05 23.9 0.0 5e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 Biotin-lipoyl like HlyD_D23 PF16576.5 GAJ46079.1 - 0.0018 17.6 0.1 0.0021 17.3 0.1 1.1 1 0 0 1 1 1 1 Barrel-sandwich domain of CusB or HlyD membrane-fusion SAM_PNT PF02198.16 GAJ46079.1 - 0.076 13.0 0.1 2.4 8.2 0.0 2.2 2 0 0 2 2 2 0 Sterile alpha motif (SAM)/Pointed domain HlyD_D23 PF16576.5 GAJ46080.1 - 4.5e-07 29.3 0.0 5.4e-07 29.0 0.0 1.1 1 0 0 1 1 1 1 Barrel-sandwich domain of CusB or HlyD membrane-fusion HlyD_3 PF13437.6 GAJ46080.1 - 0.0012 19.5 0.0 0.0019 18.9 0.0 1.4 1 1 0 1 1 1 1 HlyD family secretion protein BPD_transp_1 PF00528.22 GAJ46081.1 - 1.8e-32 112.6 15.2 1.8e-32 112.6 15.2 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Ycf70 PF17382.2 GAJ46081.1 - 0.12 12.8 3.7 0.68 10.4 0.1 3.0 3 0 0 3 3 3 0 Uncharacterized Ycf70-like Herpes_glycop PF01528.16 GAJ46081.1 - 0.81 8.5 12.9 3.2 6.5 5.1 2.3 1 1 1 2 2 2 0 Herpesvirus glycoprotein M BPD_transp_1 PF00528.22 GAJ46082.1 - 1.9e-23 83.2 6.9 3.2e-23 82.4 6.9 1.4 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 GAJ46082.1 - 0.032 14.2 0.2 0.032 14.2 0.2 3.3 4 0 0 4 4 4 0 N-terminal TM domain of oligopeptide transport permease C ABC_tran PF00005.27 GAJ46083.1 - 1.5e-64 216.6 0.0 1.1e-34 119.9 0.0 2.2 2 0 0 2 2 2 2 ABC transporter SMC_N PF02463.19 GAJ46083.1 - 8.3e-17 61.4 2.7 1.3e-08 34.6 0.3 2.9 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 GAJ46083.1 - 1e-12 48.5 12.3 3.8e-05 23.6 0.4 4.3 3 1 1 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 GAJ46083.1 - 3.9e-11 43.4 2.5 8.2e-05 22.9 0.2 3.7 2 2 0 2 2 2 2 AAA domain oligo_HPY PF08352.12 GAJ46083.1 - 5.9e-10 39.5 0.0 1.8e-05 25.2 0.0 2.5 2 0 0 2 2 2 2 Oligopeptide/dipeptide transporter, C-terminal region AAA_29 PF13555.6 GAJ46083.1 - 5.3e-09 35.7 0.6 0.00021 21.0 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_16 PF13191.6 GAJ46083.1 - 2.8e-08 34.3 0.2 0.00032 21.1 0.0 2.5 2 1 0 2 2 2 2 AAA ATPase domain IstB_IS21 PF01695.17 GAJ46083.1 - 5e-07 29.6 0.8 0.025 14.3 0.0 3.8 4 0 0 4 4 4 1 IstB-like ATP binding protein RsgA_GTPase PF03193.16 GAJ46083.1 - 1.3e-06 28.4 0.1 0.0096 15.8 0.0 2.6 2 0 0 2 2 2 2 RsgA GTPase NACHT PF05729.12 GAJ46083.1 - 2.1e-06 27.8 0.0 0.021 14.7 0.0 2.7 2 0 0 2 2 2 2 NACHT domain AAA_25 PF13481.6 GAJ46083.1 - 6.2e-06 25.9 0.0 0.094 12.3 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA PF00004.29 GAJ46083.1 - 9.6e-06 26.0 0.0 0.019 15.4 0.0 3.1 3 0 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 GAJ46083.1 - 1e-05 25.5 0.2 0.027 14.5 0.0 2.7 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) TIP49 PF06068.13 GAJ46083.1 - 5.4e-05 22.5 0.0 0.0081 15.4 0.0 2.3 2 0 0 2 2 2 1 TIP49 P-loop domain Mg_chelatase PF01078.21 GAJ46083.1 - 9.7e-05 21.8 0.6 0.18 11.2 0.1 3.0 3 0 0 3 3 2 2 Magnesium chelatase, subunit ChlI ATPase PF06745.13 GAJ46083.1 - 0.00014 21.3 0.0 0.45 9.8 0.1 2.3 2 0 0 2 2 2 2 KaiC DUF2075 PF09848.9 GAJ46083.1 - 0.0002 20.7 0.0 0.52 9.5 0.0 2.2 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) Sigma54_activat PF00158.26 GAJ46083.1 - 0.00028 20.6 3.6 0.19 11.5 0.0 3.1 4 0 0 4 4 3 2 Sigma-54 interaction domain AAA_23 PF13476.6 GAJ46083.1 - 0.00037 21.1 0.0 0.021 15.3 0.0 2.6 2 0 0 2 2 2 1 AAA domain AAA_7 PF12775.7 GAJ46083.1 - 0.00064 19.3 0.1 0.81 9.2 0.0 2.4 2 0 0 2 2 2 2 P-loop containing dynein motor region AAA_24 PF13479.6 GAJ46083.1 - 0.0007 19.4 0.5 0.92 9.2 0.0 2.8 3 0 0 3 3 2 2 AAA domain AAA_18 PF13238.6 GAJ46083.1 - 0.0011 19.5 0.0 0.017 15.7 0.0 2.5 2 0 0 2 2 2 1 AAA domain APS_kinase PF01583.20 GAJ46083.1 - 0.0016 18.4 0.2 0.061 13.2 0.0 2.3 2 0 0 2 2 2 1 Adenylylsulphate kinase PhoH PF02562.16 GAJ46083.1 - 0.0023 17.4 0.1 0.64 9.4 0.0 2.5 2 0 0 2 2 2 1 PhoH-like protein AAA_33 PF13671.6 GAJ46083.1 - 0.0038 17.4 0.1 0.28 11.3 0.0 2.6 2 1 0 2 2 2 1 AAA domain NB-ARC PF00931.22 GAJ46083.1 - 0.0043 16.3 0.1 0.4 9.8 0.0 2.4 2 0 0 2 2 2 1 NB-ARC domain MMR_HSR1 PF01926.23 GAJ46083.1 - 0.0045 17.1 0.0 1.3 9.1 0.0 2.6 2 1 0 2 2 2 1 50S ribosome-binding GTPase T2SSE PF00437.20 GAJ46083.1 - 0.0078 15.3 0.1 3.2 6.7 0.0 2.3 2 0 0 2 2 2 1 Type II/IV secretion system protein RNA_helicase PF00910.22 GAJ46083.1 - 0.015 15.7 0.0 1.2 9.6 0.0 2.5 2 0 0 2 2 2 0 RNA helicase CbiA PF01656.23 GAJ46083.1 - 0.016 15.3 0.6 0.28 11.2 0.0 2.8 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain DEAD PF00270.29 GAJ46083.1 - 0.018 14.8 0.0 3.4 7.4 0.0 2.8 2 1 0 2 2 2 0 DEAD/DEAH box helicase Hpr_kinase_C PF07475.12 GAJ46083.1 - 0.019 14.5 2.2 1.6 8.3 0.1 2.5 2 0 0 2 2 2 0 HPr Serine kinase C-terminal domain SbcCD_C PF13558.6 GAJ46083.1 - 0.019 15.2 0.2 11 6.4 0.0 3.4 3 1 0 3 3 2 0 Putative exonuclease SbcCD, C subunit PRK PF00485.18 GAJ46083.1 - 0.02 14.7 0.0 0.23 11.2 0.0 2.3 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family TsaE PF02367.17 GAJ46083.1 - 0.025 14.6 0.1 3.3 7.7 0.0 2.4 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Zeta_toxin PF06414.12 GAJ46083.1 - 0.028 13.7 0.3 0.67 9.2 0.0 2.5 2 1 1 3 3 3 0 Zeta toxin ATP-synt_ab PF00006.25 GAJ46083.1 - 0.028 14.1 0.0 0.44 10.2 0.0 2.5 3 0 0 3 3 2 0 ATP synthase alpha/beta family, nucleotide-binding domain DUF87 PF01935.17 GAJ46083.1 - 0.03 14.4 3.7 1.2 9.2 0.1 3.2 3 0 0 3 3 3 0 Helicase HerA, central domain ABC_ATPase PF09818.9 GAJ46083.1 - 0.031 13.1 0.2 7.4 5.2 0.0 3.1 3 0 0 3 3 3 0 Predicted ATPase of the ABC class Pox_A32 PF04665.12 GAJ46083.1 - 0.033 13.7 1.2 4.6 6.6 0.0 3.2 3 0 0 3 3 3 0 Poxvirus A32 protein AAA_30 PF13604.6 GAJ46083.1 - 0.038 13.7 0.3 2 8.1 0.0 2.9 4 0 0 4 4 3 0 AAA domain AAA_15 PF13175.6 GAJ46083.1 - 0.055 13.2 0.8 1.2 8.8 0.0 2.6 2 1 1 3 3 3 0 AAA ATPase domain MeaB PF03308.16 GAJ46083.1 - 0.057 12.4 0.1 2.8 6.8 0.0 2.2 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Roc PF08477.13 GAJ46083.1 - 0.079 13.2 0.3 10 6.4 0.0 2.4 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase FtsK_SpoIIIE PF01580.18 GAJ46083.1 - 0.089 12.1 0.0 4.3 6.6 0.0 2.5 2 0 0 2 2 2 0 FtsK/SpoIIIE family NTPase_1 PF03266.15 GAJ46083.1 - 0.21 11.5 0.9 1.2 9.0 0.0 2.5 3 0 0 3 3 2 0 NTPase KKLCAg1 PF15204.6 GAJ46083.1 - 0.38 10.9 2.1 2.5 8.2 0.0 3.1 3 0 0 3 3 2 0 Kita-kyushu lung cancer antigen 1 DsrD PF08679.11 GAJ46085.1 - 1 9.6 6.9 0.28 11.5 0.9 2.8 3 0 0 3 3 3 0 Dissimilatory sulfite reductase D (DsrD) PNISR PF15996.5 GAJ46085.1 - 4.3 7.6 22.1 8.9e+02 0.0 22.1 2.1 1 1 0 1 1 1 0 Arginine/serine-rich protein PNISR DUF2570 PF10828.8 GAJ46085.1 - 5.8 6.8 9.5 1.1 9.2 3.9 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF2570) Helicase_C PF00271.31 GAJ46088.1 - 1.3e-19 70.6 0.5 6e-19 68.4 0.1 2.0 2 0 0 2 2 2 1 Helicase conserved C-terminal domain UvrB PF12344.8 GAJ46088.1 - 3.9e-17 61.8 0.5 1.5e-16 60.0 0.1 2.1 1 1 1 2 2 2 1 Ultra-violet resistance protein B UVR PF02151.19 GAJ46088.1 - 7.5e-09 35.1 1.7 7.5e-09 35.1 1.7 2.6 3 0 0 3 3 3 1 UvrB/uvrC motif UvrB_inter PF17757.1 GAJ46089.1 - 5e-28 97.1 0.0 9.6e-28 96.2 0.0 1.5 1 0 0 1 1 1 1 UvrB interaction domain ResIII PF04851.15 GAJ46089.1 - 3.4e-12 46.7 0.0 6.4e-12 45.8 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD PF00270.29 GAJ46089.1 - 1.2e-05 25.2 0.1 3e-05 23.9 0.1 1.6 1 1 0 1 1 1 1 DEAD/DEAH box helicase AAA_30 PF13604.6 GAJ46089.1 - 9.2e-05 22.2 0.0 0.00015 21.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain Kinesin PF00225.23 GAJ46089.1 - 0.0025 16.8 0.0 0.0036 16.3 0.0 1.2 1 0 0 1 1 1 1 Kinesin motor domain Microtub_bd PF16796.5 GAJ46089.1 - 0.015 15.3 0.0 0.044 13.7 0.0 1.8 2 0 0 2 2 2 0 Microtubule binding SWI2_SNF2 PF18766.1 GAJ46089.1 - 0.016 14.9 0.0 0.028 14.1 0.0 1.4 1 0 0 1 1 1 0 SWI2/SNF2 ATPase UB2H PF14814.6 GAJ46089.1 - 0.037 14.0 0.0 0.14 12.2 0.0 2.0 1 1 0 1 1 1 0 Bifunctional transglycosylase second domain AAA_7 PF12775.7 GAJ46089.1 - 0.074 12.6 0.0 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region Col_cuticle_N PF01484.17 GAJ46089.1 - 0.083 13.0 0.3 0.29 11.2 0.0 2.2 2 0 0 2 2 2 0 Nematode cuticle collagen N-terminal domain AAA_22 PF13401.6 GAJ46089.1 - 0.15 12.3 0.1 0.5 10.6 0.1 2.0 1 1 0 1 1 1 0 AAA domain DUF3535 PF12054.8 GAJ46091.1 - 0.0088 15.3 1.5 0.018 14.3 1.5 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF3535) Allexi_40kDa PF05549.11 GAJ46091.1 - 0.2 11.2 6.3 6 6.3 2.6 2.6 1 1 1 2 2 2 0 Allexivirus 40kDa protein Syntaxin_2 PF14523.6 GAJ46091.1 - 3.9 7.9 20.1 0.86 10.0 0.4 4.5 3 1 0 3 3 3 0 Syntaxin-like protein XhlA PF10779.9 GAJ46091.1 - 4.6 7.5 7.0 1.1 9.5 1.3 2.9 2 0 0 2 2 2 0 Haemolysin XhlA THOC7 PF05615.13 GAJ46091.1 - 6.1 7.1 9.9 20 5.4 3.8 3.5 2 1 0 2 2 2 0 Tho complex subunit 7 Tweety PF04906.13 GAJ46091.1 - 6.1 5.4 5.7 18 3.8 0.1 2.8 2 1 1 3 3 3 0 Tweety DUF685 PF05085.12 GAJ46093.1 - 0.0084 15.5 0.5 0.0084 15.5 0.5 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF685) DDE_3 PF13358.6 GAJ46094.1 - 4.3e-12 46.0 0.0 4.8e-12 45.9 0.0 1.0 1 0 0 1 1 1 1 DDE superfamily endonuclease DEC-1_N PF04625.13 GAJ46095.1 - 3.7 6.4 8.4 4.7 6.1 8.4 1.3 1 0 0 1 1 1 0 DEC-1 protein, N-terminal region Exonuc_VII_S PF02609.16 GAJ46096.1 - 1.8e-17 63.1 3.4 1.8e-17 63.1 3.4 1.4 1 1 0 1 1 1 1 Exonuclease VII small subunit DUF2524 PF10732.9 GAJ46096.1 - 0.028 14.7 1.0 0.34 11.2 0.6 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2524) Thioredoxin_7 PF13899.6 GAJ46097.1 - 8.2e-08 32.3 0.0 1.4e-07 31.6 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin-like DsbC PF11412.8 GAJ46097.1 - 5.9e-06 26.3 0.0 1e-05 25.6 0.0 1.4 1 0 0 1 1 1 1 Disulphide bond corrector protein DsbC Thioredox_DsbH PF03190.15 GAJ46097.1 - 0.011 15.7 0.0 0.022 14.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF255 Ribul_P_3_epim PF00834.19 GAJ46098.1 - 2.1e-44 151.3 0.0 2.4e-44 151.1 0.0 1.0 1 0 0 1 1 1 1 Ribulose-phosphate 3 epimerase family LacAB_rpiB PF02502.18 GAJ46099.1 - 5.9e-33 113.8 0.0 6.8e-33 113.6 0.0 1.0 1 0 0 1 1 1 1 Ribose/Galactose Isomerase GCM PF03615.15 GAJ46099.1 - 0.17 11.7 0.1 0.35 10.8 0.0 1.5 2 0 0 2 2 2 0 GCM motif protein Topoisom_bac PF01131.20 GAJ46100.1 - 3e-121 405.3 0.0 3e-121 405.3 0.0 2.0 2 0 0 2 2 2 1 DNA topoisomerase Toprim PF01751.22 GAJ46100.1 - 4.5e-24 84.6 0.2 1.6e-23 82.9 0.1 2.1 2 0 0 2 2 2 1 Toprim domain Toprim_C_rpt PF13368.6 GAJ46100.1 - 3.5e-20 71.7 0.0 5e-11 42.4 0.0 3.1 1 1 1 2 2 2 2 Topoisomerase C-terminal repeat zf-C4_Topoisom PF01396.19 GAJ46100.1 - 4.1e-09 36.1 5.0 4.1e-09 36.1 5.0 2.2 2 0 0 2 2 2 1 Topoisomerase DNA binding C4 zinc finger Toprim_4 PF13662.6 GAJ46100.1 - 0.004 17.6 0.2 0.012 16.1 0.2 1.9 1 1 0 1 1 1 1 Toprim domain GPAT_N PF14829.6 GAJ46100.1 - 0.16 11.9 3.1 24 5.0 0.1 3.9 1 1 3 4 4 4 0 Glycerol-3-phosphate acyltransferase N-terminal PepSY_like PF11396.8 GAJ46100.1 - 0.17 12.5 12.4 29 5.3 0.6 5.0 1 1 3 4 4 4 0 Putative beta-lactamase-inhibitor-like, PepSY-like FERM_F2 PF18377.1 GAJ46100.1 - 2.8 7.9 5.3 4.6 7.2 1.0 2.7 1 1 1 2 2 2 0 FERM F2 acyl-CoA binding protein-like domain Spore_II_R PF09551.10 GAJ46100.1 - 5.8 7.4 9.4 9.9 6.6 4.4 2.8 1 1 1 2 2 2 0 Stage II sporulation protein R (spore_II_R) DNA_processg_A PF02481.15 GAJ46101.1 - 3.2e-67 225.8 0.0 4.2e-67 225.5 0.0 1.1 1 0 0 1 1 1 1 DNA recombination-mediator protein A DprA_WH PF17782.1 GAJ46101.1 - 2.3e-08 34.0 0.1 4.9e-08 33.0 0.1 1.5 1 0 0 1 1 1 1 DprA winged helix domain Ribosomal_S4 PF00163.19 GAJ46102.1 - 3.1e-16 60.1 0.8 5.6e-16 59.2 0.8 1.4 1 0 0 1 1 1 1 Ribosomal protein S4/S9 N-terminal domain S4 PF01479.25 GAJ46102.1 - 9.9e-12 44.4 0.0 1.7e-11 43.7 0.0 1.4 1 0 0 1 1 1 1 S4 domain FHA PF00498.26 GAJ46102.1 - 0.11 12.9 0.0 0.47 10.8 0.0 2.1 1 1 0 1 1 1 0 FHA domain S4_2 PF13275.6 GAJ46102.1 - 0.13 12.0 0.0 0.28 11.0 0.0 1.5 1 0 0 1 1 1 0 S4 domain EamA PF00892.20 GAJ46103.1 - 5.6e-20 71.9 36.6 6.6e-13 49.0 15.3 2.1 2 0 0 2 2 2 2 EamA-like transporter family Peptidase_M23 PF01551.22 GAJ46104.1 - 6.4e-05 23.1 0.0 8.1e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M23 DUF1161 PF06649.12 GAJ46104.1 - 0.045 14.0 0.3 0.068 13.4 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1161) LysM PF01476.20 GAJ46105.1 - 8.9e-08 32.1 0.0 2.3e-07 30.8 0.0 1.7 1 1 1 2 2 2 1 LysM domain tRNA-synt_2b PF00587.25 GAJ46106.1 - 4.3e-29 101.8 0.0 7.9e-29 100.9 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.22 GAJ46106.1 - 6.3e-23 81.1 0.7 1.2e-22 80.2 0.7 1.5 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain BicD PF09730.9 GAJ46107.1 - 0.0073 14.8 0.5 0.0079 14.7 0.5 1.2 1 0 0 1 1 1 1 Microtubule-associated protein Bicaudal-D OmdA PF13376.6 GAJ46108.1 - 1.4e-05 25.0 2.2 0.058 13.4 0.2 2.5 2 0 0 2 2 2 2 Bacteriocin-protection, YdeI or OmpD-Associated DUF5347 PF17282.2 GAJ46108.1 - 0.0006 20.1 5.8 0.0017 18.6 1.1 2.5 2 1 0 2 2 2 1 Family of unknown function (DUF5347) Sigma54_activ_2 PF14532.6 GAJ46108.1 - 0.15 12.1 1.6 2.8 8.0 0.2 2.5 3 0 0 3 3 3 0 Sigma-54 interaction domain Sigma_reg_C PF13791.6 GAJ46108.1 - 1.1 9.4 4.0 2.3 8.4 1.5 2.4 2 1 0 2 2 2 0 Sigma factor regulator C-terminal Aminotran_3 PF00202.21 GAJ46112.1 - 5.1e-106 354.7 0.0 6.2e-106 354.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III DUF4167 PF13763.6 GAJ46113.1 - 3.3e-20 72.0 0.1 5.4e-20 71.3 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4167) tRNA-synt_1b PF00579.25 GAJ46114.1 - 2.8e-71 240.2 0.0 3.7e-71 239.8 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) S4 PF01479.25 GAJ46114.1 - 9.3e-07 28.5 0.1 2.3e-06 27.2 0.1 1.6 1 0 0 1 1 1 1 S4 domain Pyr_redox_2 PF07992.14 GAJ46115.1 - 3.8e-44 151.1 0.4 4.3e-44 150.9 0.4 1.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 GAJ46115.1 - 2.3e-20 73.1 0.7 5.5e-17 62.0 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 GAJ46115.1 - 4.3e-16 59.2 1.5 3.2e-13 50.1 0.0 2.9 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 GAJ46115.1 - 9.7e-08 32.0 5.5 0.033 13.8 0.0 3.3 3 1 0 3 3 3 3 FAD dependent oxidoreductase HI0933_like PF03486.14 GAJ46115.1 - 3e-07 29.5 0.7 0.08 11.6 0.1 3.5 4 0 0 4 4 4 2 HI0933-like protein NAD_binding_8 PF13450.6 GAJ46115.1 - 2.1e-06 27.9 0.4 1.6e-05 25.1 0.1 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 GAJ46115.1 - 2.9e-06 26.7 1.1 0.011 15.0 0.1 3.2 2 1 1 3 3 3 2 Thi4 family GIDA PF01134.22 GAJ46115.1 - 1.6e-05 24.2 5.4 0.016 14.3 0.7 3.8 2 2 2 4 4 4 2 Glucose inhibited division protein A FAD_binding_2 PF00890.24 GAJ46115.1 - 1.7e-05 24.1 4.9 0.0008 18.6 0.5 3.1 2 1 2 4 4 4 2 FAD binding domain FMO-like PF00743.19 GAJ46115.1 - 0.00031 19.3 0.0 0.00054 18.5 0.0 1.6 2 0 0 2 2 2 1 Flavin-binding monooxygenase-like FAD_binding_3 PF01494.19 GAJ46115.1 - 0.00082 18.7 0.7 0.087 12.1 0.2 2.3 2 0 0 2 2 2 1 FAD binding domain NAD_Gly3P_dh_N PF01210.23 GAJ46115.1 - 0.0051 16.8 0.1 2.5 8.0 0.1 2.3 2 0 0 2 2 2 2 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Shikimate_DH PF01488.20 GAJ46115.1 - 0.0067 16.5 0.1 0.13 12.3 0.0 2.9 4 0 0 4 4 4 1 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.6 GAJ46115.1 - 0.0079 16.6 0.0 0.51 10.8 0.0 2.5 2 1 0 2 2 2 1 Putative NAD(P)-binding K_oxygenase PF13434.6 GAJ46115.1 - 0.012 14.8 0.5 0.39 9.8 0.0 2.6 2 1 1 3 3 3 0 L-lysine 6-monooxygenase (NADPH-requiring) FAD_oxidored PF12831.7 GAJ46115.1 - 0.063 12.6 1.9 0.3 10.4 0.6 2.3 2 1 1 3 3 3 0 FAD dependent oxidoreductase NAD_binding_9 PF13454.6 GAJ46115.1 - 0.34 10.9 5.1 22 5.0 0.0 3.6 4 0 0 4 4 4 0 FAD-NAD(P)-binding RuvC PF02075.17 GAJ46116.1 - 1.3e-36 125.7 0.0 1.4e-36 125.6 0.0 1.0 1 0 0 1 1 1 1 Crossover junction endodeoxyribonuclease RuvC DUF5446 PF17522.2 GAJ46116.1 - 0.057 13.6 0.0 0.26 11.5 0.0 1.9 2 0 0 2 2 2 0 Family of unknown function (DUF5446) RecO_N PF11967.8 GAJ46117.1 - 1.1e-06 28.5 0.0 1.7e-06 27.9 0.0 1.4 1 0 0 1 1 1 1 Recombination protein O N terminal RecO_C PF02565.15 GAJ46117.1 - 0.034 14.0 0.1 0.047 13.5 0.1 1.2 1 0 0 1 1 1 0 Recombination protein O C terminal adh_short_C2 PF13561.6 GAJ46120.1 - 3e-57 193.9 0.0 3.4e-57 193.7 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 GAJ46120.1 - 2.4e-54 183.8 0.0 2.8e-54 183.6 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 GAJ46120.1 - 3.3e-13 50.0 0.1 5.3e-13 49.3 0.1 1.3 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 GAJ46120.1 - 0.0063 16.0 0.1 0.011 15.2 0.1 1.4 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 GAJ46120.1 - 0.0087 16.0 0.0 0.01 15.7 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 GAJ46120.1 - 0.031 13.8 0.0 0.091 12.3 0.0 1.7 2 0 0 2 2 2 0 NmrA-like family GDP_Man_Dehyd PF16363.5 GAJ46120.1 - 0.043 13.2 0.0 0.078 12.4 0.0 1.4 1 0 0 1 1 1 0 GDP-mannose 4,6 dehydratase Lactamase_B_2 PF12706.7 GAJ46121.1 - 1.8e-22 79.9 0.0 2.3e-22 79.5 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 GAJ46121.1 - 5e-07 29.9 0.0 8.1e-07 29.2 0.0 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.12 GAJ46121.1 - 0.13 12.2 0.2 0.24 11.4 0.2 1.3 1 0 0 1 1 1 0 Zn-dependent metallo-hydrolase RNA specificity domain Flu_M1_C PF08289.11 GAJ46122.1 - 0.0026 17.9 1.0 1.8 8.8 0.2 3.0 1 1 0 2 2 2 2 Influenza Matrix protein (M1) C-terminal domain HTH_11 PF08279.12 GAJ46122.1 - 0.016 15.1 0.3 7.4 6.6 0.0 3.0 3 0 0 3 3 3 0 HTH domain Lectin_N PF03954.14 GAJ46122.1 - 0.13 12.0 0.8 0.19 11.4 0.5 1.4 1 1 0 1 1 1 0 Hepatic lectin, N-terminal domain DUF4148 PF13663.6 GAJ46122.1 - 0.14 12.3 0.4 7.9 6.8 0.1 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF4148) HTH_28 PF13518.6 GAJ46123.1 - 0.062 13.4 0.0 0.12 12.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_psq PF05225.16 GAJ46123.1 - 0.13 12.1 0.1 0.46 10.3 0.0 1.9 2 0 0 2 2 2 0 helix-turn-helix, Psq domain WD40_alt PF14077.6 GAJ46124.1 - 0.11 12.3 1.5 1.5 8.8 0.3 2.4 1 1 1 2 2 2 0 Alternative WD40 repeat motif Nucleolin_bd PF16725.5 GAJ46126.1 - 0.033 13.9 0.0 0.054 13.1 0.0 1.4 1 0 0 1 1 1 0 Nucleolin binding domain ATG101 PF07855.12 GAJ46127.1 - 0.5 10.3 4.7 0.92 9.5 4.6 1.7 1 1 0 1 1 1 0 Autophagy-related protein 101 Pept_tRNA_hydro PF01195.19 GAJ46128.1 - 4.9e-28 98.2 0.0 5.6e-28 98.0 0.0 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase Pept_tRNA_hydro PF01195.19 GAJ46129.1 - 3.4e-10 40.1 0.0 3.6e-10 40.1 0.0 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase Glyco_tran_WecB PF03808.13 GAJ46129.1 - 0.078 12.9 0.0 0.34 10.8 0.0 1.8 1 1 1 2 2 2 0 Glycosyl transferase WecB/TagA/CpsF family Ribosomal_TL5_C PF14693.6 GAJ46130.1 - 4.7e-23 81.4 2.7 8.5e-23 80.5 2.7 1.5 1 0 0 1 1 1 1 Ribosomal protein TL5, C-terminal domain Ribosomal_L25p PF01386.19 GAJ46130.1 - 1.4e-16 60.8 0.0 1.8e-15 57.2 0.0 2.1 2 0 0 2 2 2 1 Ribosomal L25p family ACCA PF03255.14 GAJ46131.1 - 1.1e-51 174.5 0.0 1.6e-51 173.9 0.0 1.3 1 0 0 1 1 1 1 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit Carboxyl_trans PF01039.22 GAJ46131.1 - 1.6e-17 63.3 0.0 2e-17 63.0 0.0 1.1 1 0 0 1 1 1 1 Carboxyl transferase domain MdcE PF06833.11 GAJ46131.1 - 0.022 14.3 0.0 0.029 13.8 0.0 1.2 1 0 0 1 1 1 0 Malonate decarboxylase gamma subunit (MdcE) Connexin PF00029.19 GAJ46132.1 - 0.041 13.6 0.3 0.048 13.4 0.3 1.0 1 0 0 1 1 1 0 Connexin FAM176 PF14851.6 GAJ46132.1 - 0.041 13.5 0.9 0.046 13.4 0.9 1.1 1 0 0 1 1 1 0 FAM176 family V_ATPase_I PF01496.19 GAJ46132.1 - 0.084 10.8 0.3 0.085 10.8 0.3 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF3489 PF11994.8 GAJ46132.1 - 0.13 12.4 0.1 0.24 11.5 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3489) DUF913 PF06025.12 GAJ46132.1 - 0.17 10.9 2.6 0.17 10.9 2.6 1.0 1 0 0 1 1 1 0 Domain of Unknown Function (DUF913) SID-1_RNA_chan PF13965.6 GAJ46132.1 - 0.23 9.8 0.1 0.25 9.7 0.1 1.0 1 0 0 1 1 1 0 dsRNA-gated channel SID-1 MAP17 PF15807.5 GAJ46132.1 - 0.34 11.2 2.1 0.37 11.0 2.1 1.2 1 0 0 1 1 1 0 Membrane-associated protein 117 kDa, PDZK1-interacting protein 1 Presenilin PF01080.17 GAJ46132.1 - 0.84 8.3 2.6 0.87 8.3 2.6 1.1 1 0 0 1 1 1 0 Presenilin AP3D1 PF06375.11 GAJ46133.1 - 0.025 14.8 14.9 0.03 14.6 14.9 1.0 1 0 0 1 1 1 0 AP-3 complex subunit delta-1 DUF3464 PF11947.8 GAJ46133.1 - 6.6 6.5 8.2 7.2 6.3 8.2 1.2 1 0 0 1 1 1 0 Photosynthesis affected mutant 68 PseudoU_synth_2 PF00849.22 GAJ46137.1 - 4.6e-33 114.6 0.2 6.7e-33 114.0 0.2 1.2 1 0 0 1 1 1 1 RNA pseudouridylate synthase S4 PF01479.25 GAJ46137.1 - 0.016 14.9 0.0 0.038 13.7 0.0 1.6 1 0 0 1 1 1 0 S4 domain TGT PF01702.18 GAJ46138.1 - 7.7e-98 327.9 0.0 9.5e-98 327.6 0.0 1.0 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase FAM86 PF14904.6 GAJ46138.1 - 0.056 13.5 0.0 0.12 12.5 0.0 1.5 1 0 0 1 1 1 0 Family of unknown function Peptidase_M41 PF01434.18 GAJ46139.1 - 6.4e-62 208.8 0.1 1e-61 208.2 0.1 1.3 1 0 0 1 1 1 1 Peptidase family M41 AAA PF00004.29 GAJ46139.1 - 2.8e-45 154.0 0.0 9e-45 152.3 0.0 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 GAJ46139.1 - 5.7e-12 45.3 0.5 1.6e-11 43.8 0.2 2.0 2 0 0 2 2 1 1 AAA+ lid domain FtsH_ext PF06480.15 GAJ46139.1 - 3.5e-08 33.8 1.2 5.7e-08 33.1 0.0 2.0 2 0 0 2 2 2 1 FtsH Extracellular TIP49 PF06068.13 GAJ46139.1 - 1.5e-05 24.4 0.0 2.7e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 TIP49 P-loop domain AAA_5 PF07728.14 GAJ46139.1 - 1.6e-05 24.9 0.0 7.8e-05 22.7 0.0 2.2 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 GAJ46139.1 - 0.00012 22.5 2.4 0.012 16.0 0.3 3.0 2 1 0 3 3 3 1 AAA ATPase domain RuvB_N PF05496.12 GAJ46139.1 - 0.00012 21.8 0.0 0.00052 19.8 0.0 2.1 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 GAJ46139.1 - 0.00059 20.1 0.1 0.046 14.0 0.0 2.7 3 0 0 3 3 2 1 AAA domain AAA_33 PF13671.6 GAJ46139.1 - 0.0029 17.8 0.0 0.0063 16.7 0.0 1.6 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 GAJ46139.1 - 0.0046 16.7 0.0 0.01 15.6 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein Mg_chelatase PF01078.21 GAJ46139.1 - 0.012 15.0 0.0 0.022 14.2 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_2 PF07724.14 GAJ46139.1 - 0.016 15.3 0.0 0.04 14.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) AAA_28 PF13521.6 GAJ46139.1 - 0.019 15.2 0.1 0.1 12.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 GAJ46139.1 - 0.024 15.0 0.0 1.8 9.0 0.0 2.4 2 0 0 2 2 2 0 RNA helicase AAA_17 PF13207.6 GAJ46139.1 - 0.031 14.7 0.1 0.096 13.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_7 PF12775.7 GAJ46139.1 - 0.036 13.6 0.3 0.19 11.3 0.3 2.0 1 1 0 1 1 1 0 P-loop containing dynein motor region AAA_14 PF13173.6 GAJ46139.1 - 0.046 13.7 0.0 0.13 12.3 0.0 1.8 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 GAJ46139.1 - 0.078 12.3 0.0 0.21 10.8 0.0 1.8 2 0 0 2 2 2 0 Zeta toxin AAA_25 PF13481.6 GAJ46139.1 - 0.088 12.4 0.7 0.44 10.1 0.2 2.1 1 1 1 2 2 2 0 AAA domain AAA_18 PF13238.6 GAJ46139.1 - 0.096 13.2 0.0 0.24 12.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain SurA_N_3 PF13624.6 GAJ46139.1 - 0.099 12.4 0.1 0.54 10.0 0.0 2.2 2 0 0 2 2 2 0 SurA N-terminal domain DUF4131 PF13567.6 GAJ46139.1 - 0.1 12.3 0.0 0.1 12.3 0.0 1.6 2 0 0 2 2 1 0 Domain of unknown function (DUF4131) AAA_24 PF13479.6 GAJ46139.1 - 0.13 11.9 0.0 0.4 10.4 0.0 1.8 2 0 0 2 2 2 0 AAA domain DUF815 PF05673.13 GAJ46139.1 - 0.14 11.3 0.0 0.39 9.8 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF815) PhoH PF02562.16 GAJ46139.1 - 0.14 11.6 0.6 0.46 9.9 0.6 1.8 1 0 0 1 1 1 0 PhoH-like protein GED PF02212.18 GAJ46142.1 - 0.048 13.8 2.1 0.059 13.5 0.7 1.8 2 0 0 2 2 2 0 Dynamin GTPase effector domain F-box_4 PF15966.5 GAJ46142.1 - 0.066 13.1 0.0 0.19 11.6 0.0 1.7 1 0 0 1 1 1 0 F-box RadC PF04002.15 GAJ46143.1 - 3.7e-35 120.5 0.0 5.4e-35 120.0 0.0 1.2 1 0 0 1 1 1 1 RadC-like JAB domain Prok-JAB PF14464.6 GAJ46143.1 - 0.098 12.4 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 Prokaryotic homologs of the JAB domain DUF1827 PF08860.10 GAJ46144.1 - 0.08 13.2 2.3 0.12 12.7 0.4 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1827) CbiK PF06180.11 GAJ46144.1 - 0.11 11.8 3.8 1.2 8.5 0.1 2.5 1 1 1 2 2 2 0 Cobalt chelatase (CbiK) Polo_box_3 PF18544.1 GAJ46144.1 - 0.27 11.9 2.8 0.79 10.4 0.2 2.7 2 1 0 3 3 3 0 Polo box domain H-kinase_dim PF02895.14 GAJ46144.1 - 0.34 11.3 8.9 1.3 9.5 0.2 3.8 4 1 0 4 4 4 0 Signal transducing histidine kinase, homodimeric domain Transketolase_N PF00456.21 GAJ46146.1 - 2e-114 382.0 0.0 2.9e-114 381.5 0.0 1.1 1 0 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain Transket_pyr PF02779.24 GAJ46146.1 - 1.2e-38 132.6 0.0 3.1e-38 131.2 0.0 1.7 2 0 0 2 2 2 1 Transketolase, pyrimidine binding domain DXP_synthase_N PF13292.6 GAJ46146.1 - 4.1e-06 26.2 0.0 0.00021 20.6 0.0 2.6 2 1 1 3 3 3 1 1-deoxy-D-xylulose-5-phosphate synthase E1_dh PF00676.20 GAJ46146.1 - 2.9e-05 23.2 0.0 6e-05 22.1 0.0 1.5 1 0 0 1 1 1 1 Dehydrogenase E1 component TPP_enzyme_C PF02775.21 GAJ46146.1 - 0.012 15.4 0.0 0.059 13.2 0.0 2.1 1 1 0 1 1 1 0 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Transketolase_C PF02780.20 GAJ46146.1 - 0.017 15.0 0.0 0.069 13.0 0.0 2.0 2 0 0 2 2 2 0 Transketolase, C-terminal domain Glyco_hydro_63N PF16923.5 GAJ46146.1 - 0.05 13.7 0.1 0.05 13.7 0.1 1.6 2 0 0 2 2 2 0 Glycosyl hydrolase family 63 N-terminal domain Polysacc_deac_1 PF01522.21 GAJ46147.1 - 3.3e-27 94.8 0.0 8.8e-27 93.5 0.0 1.6 2 0 0 2 2 2 1 Polysaccharide deacetylase DUF2334 PF10096.9 GAJ46147.1 - 0.0036 17.0 0.0 0.031 13.9 0.0 2.1 1 1 1 2 2 2 1 Uncharacterized protein conserved in bacteria (DUF2334) 3H PF02829.14 GAJ46147.1 - 0.027 14.8 1.0 0.31 11.4 0.2 2.2 2 0 0 2 2 2 0 3H domain Glyco_hydro_57 PF03065.15 GAJ46147.1 - 0.096 11.9 0.0 0.14 11.3 0.0 1.5 2 0 0 2 2 2 0 Glycosyl hydrolase family 57 5_3_exonuc PF01367.20 GAJ46149.1 - 0.21 12.2 2.5 2.7 8.6 0.0 4.0 3 0 0 3 3 3 0 5'-3' exonuclease, C-terminal SAM fold Acyl_transf_1 PF00698.21 GAJ46151.1 - 1.9e-38 132.8 0.0 2.3e-38 132.5 0.0 1.0 1 0 0 1 1 1 1 Acyl transferase domain MAGI_u5 PF16666.5 GAJ46151.1 - 0.17 12.1 0.1 0.27 11.4 0.1 1.2 1 0 0 1 1 1 0 Unstructured region on MAGI polyprenyl_synt PF00348.17 GAJ46152.1 - 1.4e-47 161.9 0.0 1.8e-47 161.6 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase HTH_23 PF13384.6 GAJ46153.1 - 0.0019 17.9 0.0 0.0027 17.5 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain Terminase_5 PF06056.12 GAJ46153.1 - 0.042 13.7 0.0 0.062 13.2 0.0 1.3 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) Bac_GH3_C PF18034.1 GAJ46153.1 - 0.09 12.5 0.0 0.096 12.4 0.0 1.1 1 0 0 1 1 1 0 Bacterial Glycosyl hydrolase family 3 C-terminal domain adh_short_C2 PF13561.6 GAJ46154.1 - 2.5e-83 279.2 0.1 2.8e-83 279.0 0.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 GAJ46154.1 - 1e-27 96.9 0.0 1.4e-27 96.4 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 GAJ46154.1 - 0.0085 16.0 0.0 0.013 15.4 0.0 1.4 1 0 0 1 1 1 1 KR domain Peptidase_S49 PF01343.18 GAJ46155.1 - 3.6e-08 33.5 0.1 4.7e-08 33.1 0.1 1.2 1 0 0 1 1 1 1 Peptidase family S49 Peptidase_S49 PF01343.18 GAJ46156.1 - 3.4e-38 131.0 0.5 3.2e-37 127.9 0.0 2.0 2 0 0 2 2 2 1 Peptidase family S49 CLP_protease PF00574.23 GAJ46156.1 - 7.3e-08 32.5 0.2 0.00022 21.2 0.0 2.9 3 0 0 3 3 3 2 Clp protease tRNA-synt_1b PF00579.25 GAJ46158.1 - 4.5e-54 183.7 0.0 6e-54 183.4 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_1f PF01921.18 GAJ46158.1 - 0.03 13.2 0.1 11 4.9 0.0 2.9 2 1 0 3 3 3 0 tRNA synthetases class I (K) THP2 PF09432.10 GAJ46158.1 - 0.078 13.0 0.4 0.42 10.7 0.0 2.3 3 0 0 3 3 3 0 Tho complex subunit THP2 BPD_transp_1 PF00528.22 GAJ46159.1 - 5.2e-16 58.9 14.1 5.2e-16 58.9 14.1 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component LptD PF04453.14 GAJ46161.1 - 1.6e-27 96.8 0.1 3.3e-27 95.7 0.1 1.6 1 1 0 1 1 1 1 LPS transport system D Frataxin_Cyay PF01491.16 GAJ46162.1 - 3.7e-16 59.1 0.0 4.2e-16 59.0 0.0 1.1 1 0 0 1 1 1 1 Frataxin-like domain DUF896 PF05979.12 GAJ46163.1 - 0.24 11.3 2.3 15 5.5 0.0 2.9 2 1 1 3 3 3 0 Bacterial protein of unknown function (DUF896) Terminase_6C PF17289.2 GAJ46170.1 - 0.21 11.7 0.0 0.28 11.2 0.0 1.1 1 0 0 1 1 1 0 Terminase RNaseH-like domain TFIIS_M PF07500.14 GAJ46171.1 - 0.065 13.7 0.1 0.23 12.0 0.0 1.9 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS), central domain PI3K_P85_iSH2 PF16454.5 GAJ46172.1 - 0.012 15.2 0.0 0.017 14.7 0.0 1.1 1 0 0 1 1 1 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain SesA PF17107.5 GAJ46172.1 - 0.042 14.1 0.1 0.057 13.6 0.1 1.2 1 0 0 1 1 1 0 N-terminal domain on NACHT_NTPase and P-loop NTPases XhlA PF10779.9 GAJ46172.1 - 0.14 12.4 0.5 0.2 11.8 0.5 1.2 1 0 0 1 1 1 0 Haemolysin XhlA NMO PF03060.15 GAJ46173.1 - 2e-46 158.9 0.1 3.8e-31 108.7 0.0 2.0 1 1 1 2 2 2 2 Nitronate monooxygenase FMN_dh PF01070.18 GAJ46173.1 - 2.4e-06 26.8 0.6 4.3e-06 26.0 0.6 1.3 1 0 0 1 1 1 1 FMN-dependent dehydrogenase IMPDH PF00478.25 GAJ46173.1 - 0.0001 21.4 0.0 0.03 13.3 0.1 2.4 1 1 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain DHO_dh PF01180.21 GAJ46173.1 - 0.00019 20.8 0.2 0.00033 20.0 0.2 1.3 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase ThiG PF05690.14 GAJ46173.1 - 0.036 13.4 0.1 0.06 12.6 0.1 1.4 1 0 0 1 1 1 0 Thiazole biosynthesis protein ThiG AA_kinase PF00696.28 GAJ46174.1 - 1.9e-47 161.9 0.1 2.9e-47 161.3 0.1 1.3 1 0 0 1 1 1 1 Amino acid kinase family Xpo1 PF08389.12 GAJ46174.1 - 0.098 12.7 1.7 0.18 11.9 1.7 1.4 1 0 0 1 1 1 0 Exportin 1-like protein Sugar_tr PF00083.24 GAJ46175.1 - 2.1e-26 92.8 37.4 5.4e-19 68.4 13.4 2.1 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_1 PF07690.16 GAJ46175.1 - 4.2e-18 65.4 53.4 6.4e-09 35.2 21.7 2.4 1 1 1 2 2 2 2 Major Facilitator Superfamily S1 PF00575.23 GAJ46176.1 - 3.8e-83 273.9 24.3 7.1e-20 71.1 0.4 6.1 6 0 0 6 6 6 6 S1 RNA binding domain S1_2 PF13509.6 GAJ46176.1 - 2.6e-08 33.8 3.3 0.27 11.3 0.0 6.4 5 3 0 5 5 5 2 S1 domain PCB_OB PF17092.5 GAJ46176.1 - 2.7e-06 28.1 3.4 0.26 12.0 0.0 4.9 3 2 2 5 5 5 2 Penicillin-binding protein OB-like domain MRP-S35 PF10246.9 GAJ46176.1 - 0.00066 19.6 0.4 3.9 7.5 0.0 3.9 3 1 0 3 3 3 1 Mitochondrial ribosomal protein MRP-S35 DUF150_C PF17384.2 GAJ46176.1 - 0.02 15.0 1.1 13 6.0 0.1 4.0 3 1 0 3 3 3 0 RimP C-terminal SH3 domain Hexapep_2 PF14602.6 GAJ46177.1 - 3.2e-10 39.6 7.7 6.1e-08 32.3 0.3 3.0 3 1 0 3 3 3 2 Hexapeptide repeat of succinyl-transferase Hexapep PF00132.24 GAJ46177.1 - 2.1e-08 33.6 7.9 0.0014 18.3 0.3 3.5 2 1 1 3 3 3 2 Bacterial transferase hexapeptide (six repeats) THDPS_N_2 PF14805.6 GAJ46177.1 - 1.1e-06 28.8 0.0 2.2e-06 27.8 0.0 1.5 1 0 0 1 1 1 1 Tetrahydrodipicolinate N-succinyltransferase N-terminal LolA PF03548.15 GAJ46178.1 - 5.9e-12 45.6 0.1 7.2e-12 45.3 0.1 1.1 1 0 0 1 1 1 1 Outer membrane lipoprotein carrier protein LolA DUF2092 PF09865.9 GAJ46178.1 - 0.022 14.1 0.0 0.036 13.4 0.0 1.3 1 0 0 1 1 1 0 Predicted periplasmic protein (DUF2092) Bac_DnaA PF00308.18 GAJ46179.1 - 2.4e-05 24.3 0.0 0.016 15.1 0.0 2.1 2 0 0 2 2 2 2 Bacterial dnaA protein ATPase_2 PF01637.18 GAJ46179.1 - 0.2 11.5 0.0 0.21 11.4 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea DDE_3 PF13358.6 GAJ46180.1 - 0.0033 17.2 0.0 0.0037 17.0 0.0 1.0 1 0 0 1 1 1 1 DDE superfamily endonuclease AAA_26 PF13500.6 GAJ46181.1 - 7.4e-25 87.9 0.3 9.1e-25 87.6 0.3 1.1 1 0 0 1 1 1 1 AAA domain DUF2112 PF09885.9 GAJ46181.1 - 0.035 14.1 0.1 0.31 11.1 0.1 2.1 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2112) AAA_26 PF13500.6 GAJ46182.1 - 1.9e-16 60.5 0.0 2e-16 60.4 0.0 1.0 1 0 0 1 1 1 1 AAA domain OMP_b-brl PF13505.6 GAJ46184.1 - 1.6e-05 25.1 0.3 0.00018 21.7 0.3 2.5 1 1 0 1 1 1 1 Outer membrane protein beta-barrel domain OmpA_membrane PF01389.17 GAJ46184.1 - 0.00038 20.2 0.0 0.00061 19.6 0.0 1.3 1 0 0 1 1 1 1 OmpA-like transmembrane domain Methyltransf_25 PF13649.6 GAJ46185.1 - 2.5e-09 37.7 0.0 4.9e-09 36.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 GAJ46185.1 - 6.9e-08 33.0 0.0 1.4e-07 32.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 GAJ46185.1 - 4.3e-07 29.8 0.0 9e-07 28.8 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 GAJ46185.1 - 8e-07 29.7 0.0 2.2e-06 28.3 0.0 1.7 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 GAJ46185.1 - 3.8e-05 23.6 0.0 5.2e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 GAJ46185.1 - 0.012 15.6 0.0 0.019 14.9 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain MTS PF05175.14 GAJ46185.1 - 0.031 13.8 0.0 0.045 13.3 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain PCMT PF01135.19 GAJ46185.1 - 0.042 13.6 0.0 0.13 12.0 0.0 1.7 1 1 1 2 2 2 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_2 PF00891.18 GAJ46185.1 - 0.11 11.8 0.0 0.16 11.2 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase domain Scm3 PF10384.9 GAJ46185.1 - 0.13 12.0 0.0 11 5.8 0.0 2.4 2 0 0 2 2 2 0 Centromere protein Scm3 AAA_26 PF13500.6 GAJ46186.1 - 1.2e-42 146.0 0.1 1.4e-42 145.7 0.1 1.0 1 0 0 1 1 1 1 AAA domain rve_2 PF13333.6 GAJ46187.1 - 3.1e-05 24.1 0.1 4.3e-05 23.6 0.1 1.2 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.6 GAJ46187.1 - 0.0035 17.1 0.1 0.0047 16.7 0.1 1.2 1 0 0 1 1 1 1 Integrase core domain Ribonuc_red_lgC PF02867.15 GAJ46188.1 - 8.7e-63 212.6 0.0 1.3e-62 212.0 0.0 1.2 1 0 0 1 1 1 1 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.21 GAJ46188.1 - 8.9e-12 44.8 0.1 1.7e-11 43.9 0.1 1.5 1 0 0 1 1 1 1 Ribonucleotide reductase, all-alpha domain FBPase_2 PF06874.11 GAJ46188.1 - 0.11 10.8 0.1 0.14 10.4 0.1 1.1 1 0 0 1 1 1 0 Firmicute fructose-1,6-bisphosphatase Ribonuc_red_lgC PF02867.15 GAJ46189.1 - 4.6e-22 78.2 0.0 5.5e-22 78.0 0.0 1.1 1 0 0 1 1 1 1 Ribonucleotide reductase, barrel domain RNA_pol_Rpb5_C PF01191.19 GAJ46189.1 - 0.12 12.3 0.0 0.21 11.5 0.0 1.4 1 0 0 1 1 1 0 RNA polymerase Rpb5, C-terminal domain Ribonuc_red_sm PF00268.21 GAJ46190.1 - 2.9e-65 220.5 2.0 4e-65 220.1 2.0 1.1 1 0 0 1 1 1 1 Ribonucleotide reductase, small chain tRNA-synt_1 PF00133.22 GAJ46192.1 - 2.3e-62 211.1 0.3 2.8e-62 210.8 0.3 1.0 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.11 GAJ46192.1 - 1.7e-10 40.3 0.0 1.1e-09 37.6 0.0 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (M) PTS_IIB PF02302.17 GAJ46192.1 - 0.2 12.4 0.0 0.58 10.9 0.0 1.8 2 0 0 2 2 2 0 PTS system, Lactose/Cellobiose specific IIB subunit tRNA-synt_1 PF00133.22 GAJ46193.1 - 3.5e-111 372.4 0.1 3.5e-111 372.4 0.1 1.5 2 0 0 2 2 2 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 GAJ46193.1 - 2.3e-27 95.8 0.5 6.2e-27 94.4 0.5 1.7 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 GAJ46193.1 - 2.2e-14 53.0 0.5 2.7e-06 26.4 0.4 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) Val_tRNA-synt_C PF10458.9 GAJ46193.1 - 6e-09 36.1 0.9 1.2e-08 35.1 0.9 1.6 1 0 0 1 1 1 1 Valyl tRNA synthetase tRNA binding arm tRNA-synt_1_2 PF13603.6 GAJ46193.1 - 2.2e-06 27.3 0.0 4.6e-06 26.3 0.0 1.4 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 ADIP PF11559.8 GAJ46193.1 - 0.012 15.7 1.5 0.022 14.8 1.5 1.4 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding tRNA-synt_1f PF01921.18 GAJ46193.1 - 0.023 13.6 0.0 0.051 12.5 0.0 1.5 1 0 0 1 1 1 0 tRNA synthetases class I (K) CdiI_2 PF18593.1 GAJ46193.1 - 0.045 14.4 0.4 0.21 12.3 0.1 2.3 2 0 0 2 2 2 0 CdiI immunity protein Prefoldin_2 PF01920.20 GAJ46193.1 - 2.5 8.1 4.7 1.3 9.0 1.4 2.2 3 0 0 3 3 3 0 Prefoldin subunit DUF5072 PF16807.5 GAJ46194.1 - 0.027 14.5 0.2 0.039 14.0 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF5072) Glycos_transf_N PF04413.16 GAJ46195.1 - 1.6e-38 132.1 0.0 2e-38 131.8 0.0 1.1 1 0 0 1 1 1 1 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) Sod_Fe_C PF02777.18 GAJ46196.1 - 1.5e-31 108.6 2.9 3.2e-31 107.5 0.5 2.3 3 0 0 3 3 3 1 Iron/manganese superoxide dismutases, C-terminal domain Sod_Fe_N PF00081.22 GAJ46196.1 - 1.2e-22 80.2 1.8 1.2e-22 80.2 1.8 2.0 2 0 0 2 2 2 1 Iron/manganese superoxide dismutases, alpha-hairpin domain Glycos_transf_1 PF00534.20 GAJ46197.1 - 3.2e-28 98.4 0.0 4.7e-28 97.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 GAJ46197.1 - 1.2e-21 77.6 0.0 1.8e-21 76.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 GAJ46197.1 - 5.4e-08 33.0 0.0 8.1e-08 32.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 GAJ46197.1 - 4.2e-06 27.1 0.0 1.2e-05 25.6 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 GAJ46197.1 - 0.011 16.2 0.0 0.016 15.6 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain DAHP_synth_1 PF00793.20 GAJ46198.1 - 6.1e-63 212.3 0.0 7.2e-63 212.0 0.0 1.0 1 0 0 1 1 1 1 DAHP synthetase I family PEP_mutase PF13714.6 GAJ46198.1 - 0.0034 16.9 0.0 0.022 14.2 0.0 2.1 2 0 0 2 2 2 1 Phosphoenolpyruvate phosphomutase KRTAP PF11759.8 GAJ46199.1 - 0.0059 17.1 12.2 0.0069 16.9 12.2 1.1 1 0 0 1 1 1 1 Keratin-associated matrix Keratin_2_head PF16208.5 GAJ46199.1 - 0.12 12.5 12.5 0.16 12.1 12.5 1.1 1 0 0 1 1 1 0 Keratin type II head ABC_tran PF00005.27 GAJ46201.1 - 4.4e-33 114.7 0.0 5.9e-33 114.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter Rad17 PF03215.15 GAJ46201.1 - 3.1e-08 33.8 0.3 1e-05 25.6 0.1 2.1 2 0 0 2 2 2 1 Rad17 P-loop domain SMC_N PF02463.19 GAJ46201.1 - 6.6e-08 32.2 0.2 2e-07 30.7 0.2 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 GAJ46201.1 - 0.00013 21.9 1.5 0.0016 18.3 0.4 2.0 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 GAJ46201.1 - 0.00016 21.6 0.1 0.00026 20.9 0.1 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 GAJ46201.1 - 0.0002 21.8 0.1 0.00032 21.1 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.6 GAJ46201.1 - 0.00032 20.4 0.0 0.00048 19.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 GAJ46201.1 - 0.001 18.8 0.3 0.002 17.9 0.3 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain T2SSE PF00437.20 GAJ46201.1 - 0.0015 17.6 0.2 0.004 16.2 0.1 1.6 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_22 PF13401.6 GAJ46201.1 - 0.0016 18.7 1.2 0.0096 16.2 0.2 2.1 2 0 0 2 2 2 1 AAA domain Mg_chelatase PF01078.21 GAJ46201.1 - 0.002 17.5 0.2 0.0045 16.4 0.1 1.6 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA PF00004.29 GAJ46201.1 - 0.0025 18.2 0.9 0.008 16.6 0.9 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.6 GAJ46201.1 - 0.0033 17.9 0.0 0.004 17.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_5 PF07728.14 GAJ46201.1 - 0.0047 16.9 0.1 0.0088 16.0 0.1 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) ATPase_2 PF01637.18 GAJ46201.1 - 0.0092 15.9 0.0 0.013 15.4 0.0 1.3 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea cobW PF02492.19 GAJ46201.1 - 0.01 15.5 0.3 0.2 11.2 0.0 2.2 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_28 PF13521.6 GAJ46201.1 - 0.014 15.6 0.0 0.025 14.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 GAJ46201.1 - 0.015 15.9 0.0 0.03 14.9 0.0 1.6 2 0 0 2 2 1 0 AAA domain PduV-EutP PF10662.9 GAJ46201.1 - 0.016 14.9 0.2 0.04 13.7 0.2 1.6 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation NACHT PF05729.12 GAJ46201.1 - 0.017 15.1 0.3 0.02 14.8 0.3 1.4 1 1 0 1 1 1 0 NACHT domain AAA_15 PF13175.6 GAJ46201.1 - 0.018 14.7 0.2 0.19 11.4 0.1 2.0 1 1 0 2 2 2 0 AAA ATPase domain Zeta_toxin PF06414.12 GAJ46201.1 - 0.023 14.0 0.1 0.088 12.1 0.0 1.9 2 1 0 2 2 2 0 Zeta toxin AAA_30 PF13604.6 GAJ46201.1 - 0.024 14.4 0.1 0.075 12.7 0.0 1.8 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.22 GAJ46201.1 - 0.025 14.2 0.0 0.036 13.7 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain RNA_helicase PF00910.22 GAJ46201.1 - 0.039 14.4 0.0 0.14 12.6 0.0 1.9 2 0 0 2 2 2 0 RNA helicase TsaE PF02367.17 GAJ46201.1 - 0.045 13.8 0.1 0.076 13.0 0.1 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_33 PF13671.6 GAJ46201.1 - 0.05 13.8 0.2 0.093 12.9 0.2 1.5 1 0 0 1 1 1 0 AAA domain SRPRB PF09439.10 GAJ46201.1 - 0.074 12.5 0.1 0.13 11.7 0.1 1.4 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit Adeno_IVa2 PF02456.15 GAJ46201.1 - 0.085 11.6 0.0 0.14 11.0 0.0 1.4 1 0 0 1 1 1 0 Adenovirus IVa2 protein NB-ARC PF00931.22 GAJ46201.1 - 0.097 11.8 0.1 0.18 11.0 0.1 1.4 1 0 0 1 1 1 0 NB-ARC domain AAA_7 PF12775.7 GAJ46201.1 - 0.11 12.1 0.1 0.19 11.2 0.1 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_14 PF13173.6 GAJ46201.1 - 0.11 12.6 0.1 0.31 11.1 0.1 1.8 2 0 0 2 2 2 0 AAA domain ATPase PF06745.13 GAJ46201.1 - 0.12 11.8 0.1 0.37 10.1 0.0 1.8 2 0 0 2 2 2 0 KaiC AAA_24 PF13479.6 GAJ46201.1 - 0.12 12.1 0.4 0.24 11.1 0.4 1.4 1 0 0 1 1 1 0 AAA domain MobB PF03205.14 GAJ46201.1 - 0.12 12.3 0.1 0.24 11.3 0.1 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_19 PF13245.6 GAJ46201.1 - 0.2 12.0 0.8 1.2 9.5 0.4 2.0 2 0 0 2 2 2 0 AAA domain FtsX PF02687.21 GAJ46202.1 - 7.7e-07 29.5 4.6 7.7e-07 29.5 4.6 3.2 3 0 0 3 3 3 1 FtsX-like permease family Linker_histone PF00538.19 GAJ46202.1 - 0.1 12.9 0.2 0.29 11.5 0.2 1.7 1 0 0 1 1 1 0 linker histone H1 and H5 family DUF3180 PF11377.8 GAJ46202.1 - 7.2 6.8 9.5 1.3 9.1 1.5 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF3180) Ribosomal_L36 PF00444.18 GAJ46204.1 - 3.8e-09 36.6 4.7 4.4e-09 36.4 4.7 1.1 1 0 0 1 1 1 1 Ribosomal protein L36 RNA_pol_Rpb6 PF01192.22 GAJ46205.1 - 1.6e-08 34.3 0.0 2.1e-08 34.0 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb6 DNA_topoisoIV PF00521.20 GAJ46206.1 - 8.3e-140 466.4 0.0 1.3e-139 465.8 0.0 1.3 1 0 0 1 1 1 1 DNA gyrase/topoisomerase IV, subunit A DNA_gyraseA_C PF03989.13 GAJ46206.1 - 3.2e-66 218.6 4.8 5.3e-12 45.0 0.1 6.4 6 0 0 6 6 6 6 DNA gyrase C-terminal domain, beta-propeller DUF2835 PF11197.8 GAJ46206.1 - 0.00057 19.6 0.1 0.0021 17.8 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF2835) PriA_C PF18074.1 GAJ46207.1 - 9e-19 68.1 0.1 2.1e-18 66.9 0.1 1.7 1 0 0 1 1 1 1 Primosomal protein N C-terminal domain DEAD PF00270.29 GAJ46207.1 - 2.9e-13 49.9 0.0 1.2e-12 48.0 0.0 1.9 2 0 0 2 2 2 1 DEAD/DEAH box helicase ResIII PF04851.15 GAJ46207.1 - 2.6e-12 47.1 0.0 4.4e-12 46.3 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit PriA_3primeBD PF17764.1 GAJ46207.1 - 7.4e-12 45.0 0.0 1.7e-10 40.6 0.0 2.8 3 0 0 3 3 3 1 3′ DNA-binding domain (3′BD) PriA_CRR PF18319.1 GAJ46207.1 - 9.4e-08 31.9 4.1 3.8e-07 30.0 4.1 2.1 1 0 0 1 1 1 1 PriA DNA helicase Cys-rich region (CRR) domain Helicase_C PF00271.31 GAJ46207.1 - 1.1e-07 32.2 0.1 8e-05 23.0 0.0 2.9 3 0 0 3 3 3 2 Helicase conserved C-terminal domain SNF2_N PF00176.23 GAJ46207.1 - 0.00064 18.5 0.3 0.0066 15.2 0.1 2.2 2 0 0 2 2 2 1 SNF2 family N-terminal domain TrwB_AAD_bind PF10412.9 GAJ46207.1 - 0.026 13.4 0.0 0.049 12.5 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_30 PF13604.6 GAJ46207.1 - 0.072 12.8 0.0 0.11 12.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain Phage_integrase PF00589.22 GAJ46208.1 - 2.3e-31 108.9 0.0 4.5e-31 108.0 0.0 1.5 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.17 GAJ46208.1 - 3.8e-09 36.7 1.2 2.8e-08 33.9 0.2 2.9 2 1 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 GAJ46208.1 - 1.3e-07 32.0 0.6 3.1e-07 30.8 0.6 1.7 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 GAJ46208.1 - 0.0074 16.6 0.1 0.02 15.2 0.1 1.7 1 0 0 1 1 1 1 Phage integrase SAM-like domain Integrase_1 PF12835.7 GAJ46208.1 - 0.02 15.0 0.1 0.16 12.0 0.0 2.5 2 2 0 2 2 2 0 Integrase DIMCO_N PF16844.5 GAJ46208.1 - 0.085 13.2 0.0 0.32 11.4 0.0 1.9 2 0 0 2 2 2 0 Dinitrogenase iron-molybdenum cofactor, N-terminal DUF4114 PF13448.6 GAJ46208.1 - 0.13 13.1 0.0 0.28 12.0 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4114) SmpA_OmlA PF04355.13 GAJ46209.1 - 2.8e-07 30.2 0.0 3.9e-07 29.8 0.0 1.2 1 0 0 1 1 1 1 SmpA / OmlA family SIMPL PF04402.14 GAJ46210.1 - 7.8e-18 65.6 0.8 1e-17 65.3 0.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF541) SIMPL PF04402.14 GAJ46211.1 - 2e-14 54.5 0.0 2.6e-14 54.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF541) KxDL PF10241.9 GAJ46211.1 - 0.097 13.0 3.4 1.9 8.8 0.1 2.9 3 0 0 3 3 3 0 Uncharacterized conserved protein SIMPL PF04402.14 GAJ46212.1 - 3.4e-12 47.2 0.0 4.4e-12 46.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF541) Sec63 PF02889.16 GAJ46212.1 - 0.0059 15.8 0.1 0.008 15.4 0.1 1.3 1 0 0 1 1 1 1 Sec63 Brl domain DUF4178 PF13785.6 GAJ46212.1 - 0.025 14.7 0.0 0.039 14.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4178) Methyltransf_4 PF02390.17 GAJ46213.1 - 2.3e-38 131.4 0.0 2.6e-38 131.2 0.0 1.1 1 0 0 1 1 1 1 Putative methyltransferase Peroxidase_ext PF11895.8 GAJ46213.1 - 0.012 15.6 0.0 3.7 7.5 0.0 2.3 2 0 0 2 2 2 0 Fungal peroxidase extension region Methyltransf_12 PF08242.12 GAJ46213.1 - 0.049 14.4 0.0 0.57 10.9 0.0 2.4 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_25 PF13649.6 GAJ46213.1 - 0.08 13.7 0.0 1.5 9.6 0.0 2.6 3 0 0 3 3 3 0 Methyltransferase domain CagY_M PF07337.11 GAJ46213.1 - 0.11 12.2 0.3 0.22 11.2 0.3 1.4 1 0 0 1 1 1 0 DC-EC Repeat CBM_4_9 PF02018.17 GAJ46214.1 - 0.11 12.7 0.0 0.13 12.5 0.0 1.0 1 0 0 1 1 1 0 Carbohydrate binding domain HTH_AraC PF00165.23 GAJ46214.1 - 0.16 12.1 0.1 0.34 11.1 0.0 1.6 1 1 1 2 2 2 0 Bacterial regulatory helix-turn-helix proteins, AraC family ATP-synt_8 PF00895.20 GAJ46215.1 - 0.16 12.4 0.2 0.16 12.4 0.2 2.3 2 1 0 2 2 2 0 ATP synthase protein 8 DUF3806 PF12713.7 GAJ46216.1 - 0.031 14.0 0.0 0.037 13.8 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3806) TcpS PF17456.2 GAJ46217.1 - 0.0055 16.8 0.5 0.0057 16.7 0.5 1.0 1 0 0 1 1 1 1 Toxin-coregulated pilus protein S DDE_Tnp_4 PF13359.6 GAJ46219.1 - 1.6e-06 27.9 0.0 1.8e-06 27.7 0.0 1.1 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1 PF01609.21 GAJ46219.1 - 0.037 13.7 0.1 0.043 13.5 0.1 1.0 1 0 0 1 1 1 0 Transposase DDE domain Methyltransf_25 PF13649.6 GAJ46221.1 - 2.3e-08 34.6 0.0 3.8e-08 33.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 GAJ46221.1 - 2.3e-05 24.9 0.0 3.9e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 GAJ46221.1 - 3.9e-05 22.9 0.0 4.4e-05 22.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_12 PF08242.12 GAJ46221.1 - 0.00047 20.8 0.0 0.00078 20.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 GAJ46221.1 - 0.00071 19.4 0.0 0.00088 19.1 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Ubie_methyltran PF01209.18 GAJ46221.1 - 0.0012 18.2 0.0 0.0015 17.9 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.6 GAJ46221.1 - 0.0013 18.6 0.0 0.003 17.3 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.19 GAJ46221.1 - 0.017 15.2 0.0 0.026 14.6 0.0 1.4 1 1 0 1 1 1 0 FtsJ-like methyltransferase Methyltransf_23 PF13489.6 GAJ46221.1 - 0.024 14.5 0.0 0.024 14.5 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Glyco_transf_25 PF01755.17 GAJ46222.1 - 6.3e-18 65.4 0.0 9.8e-15 54.9 0.0 2.1 2 0 0 2 2 2 2 Glycosyltransferase family 25 (LPS biosynthesis protein) DUF4452 PF14618.6 GAJ46222.1 - 0.29 11.0 0.0 0.48 10.3 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4452) AA_permease_2 PF13520.6 GAJ46225.1 - 1.3e-22 80.2 54.1 1.6e-22 79.9 54.1 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 GAJ46225.1 - 7.2e-06 24.9 40.1 0.00016 20.4 40.0 2.5 1 1 0 1 1 1 1 Amino acid permease PMP1_2 PF08114.11 GAJ46225.1 - 1.8 8.4 6.6 0.34 10.7 2.0 2.2 2 0 0 2 2 2 0 ATPase proteolipid family Transcrip_reg PF01709.20 GAJ46226.1 - 5.3e-73 245.4 0.2 6e-73 245.2 0.2 1.0 1 0 0 1 1 1 1 Transcriptional regulator DPBB_1 PF03330.18 GAJ46227.1 - 1.1e-20 73.6 0.0 1.8e-20 73.0 0.0 1.3 1 0 0 1 1 1 1 Lytic transglycolase SPOR PF05036.13 GAJ46228.1 - 0.00011 22.5 0.0 0.00039 20.7 0.0 1.8 1 1 1 2 2 2 1 Sporulation related domain Peptidase_S11 PF00768.20 GAJ46229.1 - 6.9e-53 179.6 0.0 8.7e-53 179.2 0.0 1.1 1 0 0 1 1 1 1 D-alanyl-D-alanine carboxypeptidase PBP5_C PF07943.13 GAJ46229.1 - 2e-10 40.8 0.6 3.5e-10 40.0 0.6 1.4 1 0 0 1 1 1 1 Penicillin-binding protein 5, C-terminal domain Beta-lactamase2 PF13354.6 GAJ46229.1 - 1.9e-08 34.2 0.0 2.5e-08 33.8 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase enzyme family Peptidase_S13 PF02113.15 GAJ46229.1 - 0.021 13.6 0.0 0.032 13.0 0.0 1.3 1 0 0 1 1 1 0 D-Ala-D-Ala carboxypeptidase 3 (S13) family NES_C_h PF18208.1 GAJ46229.1 - 0.11 12.8 0.1 3 8.2 0.0 2.6 3 0 0 3 3 3 0 Nicking enzyme C-terminal middle helical domain Thymidylate_kin PF02223.17 GAJ46230.1 - 3.1e-41 141.1 0.0 3.5e-41 140.9 0.0 1.0 1 0 0 1 1 1 1 Thymidylate kinase AAA_28 PF13521.6 GAJ46230.1 - 8.1e-05 22.9 0.0 9e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 GAJ46230.1 - 0.037 14.3 0.0 0.19 12.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain HHH_5 PF14520.6 GAJ46231.1 - 2.4e-14 53.7 0.5 1.7e-13 50.9 0.0 2.5 3 0 0 3 3 3 1 Helix-hairpin-helix domain RuvA_N PF01330.21 GAJ46231.1 - 3.1e-13 49.6 1.6 3.3e-12 46.3 0.5 2.5 3 0 0 3 3 3 1 RuvA N terminal domain HHH PF00633.23 GAJ46231.1 - 1.7e-07 30.7 0.4 0.001 18.8 0.0 2.8 3 0 0 3 3 3 2 Helix-hairpin-helix motif RuvA_C PF07499.13 GAJ46231.1 - 8.1e-07 29.4 0.4 1.8e-06 28.3 0.4 1.5 1 0 0 1 1 1 1 RuvA, C-terminal domain HHH_2 PF12826.7 GAJ46231.1 - 1.5e-06 28.2 0.2 0.0044 17.1 0.0 2.8 3 0 0 3 3 3 2 Helix-hairpin-helix motif 5_3_exonuc PF01367.20 GAJ46231.1 - 9.5e-05 22.9 0.0 0.0029 18.2 0.0 2.3 1 1 1 2 2 2 2 5'-3' exonuclease, C-terminal SAM fold HHH_3 PF12836.7 GAJ46231.1 - 0.0001 22.5 0.0 0.57 10.5 0.0 2.6 2 0 0 2 2 2 2 Helix-hairpin-helix motif HHH_8 PF14716.6 GAJ46231.1 - 0.00012 22.4 0.0 0.44 11.0 0.0 2.8 2 0 0 2 2 2 2 Helix-hairpin-helix domain DUF3701 PF12482.8 GAJ46231.1 - 0.00086 19.3 0.0 0.29 11.2 0.0 2.6 1 1 1 2 2 2 2 Phage integrase protein Transposase_20 PF02371.16 GAJ46231.1 - 0.0013 18.9 0.0 3.3 8.1 0.0 3.0 3 0 0 3 3 3 2 Transposase IS116/IS110/IS902 family Cdd1 PF11731.8 GAJ46231.1 - 0.0046 17.2 0.0 1.5 9.1 0.0 2.5 2 1 0 2 2 2 1 Pathogenicity locus IMS_HHH PF11798.8 GAJ46231.1 - 0.0088 16.3 0.1 6.1 7.4 0.0 2.7 2 0 0 2 2 2 1 IMS family HHH motif TsaE PF02367.17 GAJ46232.1 - 1.2e-29 102.8 0.0 1.6e-29 102.4 0.0 1.0 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_16 PF13191.6 GAJ46232.1 - 2.3e-05 24.8 0.0 2.8e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain AAA_7 PF12775.7 GAJ46232.1 - 5.6e-05 22.7 0.0 7.3e-05 22.3 0.0 1.2 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_33 PF13671.6 GAJ46232.1 - 0.0017 18.5 0.0 0.002 18.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain DUF815 PF05673.13 GAJ46232.1 - 0.0021 17.3 0.0 0.0029 16.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA PF00004.29 GAJ46232.1 - 0.0026 18.2 0.0 0.0034 17.8 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ATPase_2 PF01637.18 GAJ46232.1 - 0.0032 17.4 0.1 0.0098 15.8 0.0 1.6 1 1 1 2 2 2 1 ATPase domain predominantly from Archaea NACHT PF05729.12 GAJ46232.1 - 0.0069 16.3 0.0 0.011 15.6 0.0 1.4 1 0 0 1 1 1 1 NACHT domain Sigma54_activat PF00158.26 GAJ46232.1 - 0.0084 15.8 0.0 0.012 15.3 0.0 1.2 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_24 PF13479.6 GAJ46232.1 - 0.027 14.2 0.0 0.072 12.8 0.0 1.6 2 0 0 2 2 2 0 AAA domain Septin PF00735.18 GAJ46232.1 - 0.043 13.1 0.0 0.053 12.8 0.0 1.3 1 0 0 1 1 1 0 Septin Viral_helicase1 PF01443.18 GAJ46232.1 - 0.048 13.4 0.0 0.084 12.6 0.0 1.4 1 1 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_22 PF13401.6 GAJ46232.1 - 0.052 13.8 0.1 0.074 13.3 0.1 1.4 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 GAJ46232.1 - 0.065 13.6 0.0 0.1 13.0 0.0 1.4 1 0 0 1 1 1 0 RNA helicase AAA_29 PF13555.6 GAJ46232.1 - 0.08 12.7 0.0 0.2 11.4 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain Pox_A32 PF04665.12 GAJ46232.1 - 0.1 12.0 0.3 0.2 11.1 0.0 1.6 2 0 0 2 2 2 0 Poxvirus A32 protein Bac_DnaA PF00308.18 GAJ46232.1 - 0.11 12.3 0.0 0.15 11.9 0.0 1.2 1 0 0 1 1 1 0 Bacterial dnaA protein AAA_5 PF07728.14 GAJ46232.1 - 0.12 12.4 0.0 0.22 11.5 0.0 1.5 2 0 0 2 2 1 0 AAA domain (dynein-related subfamily) RsgA_GTPase PF03193.16 GAJ46232.1 - 0.14 12.1 0.0 0.2 11.6 0.0 1.2 1 0 0 1 1 1 0 RsgA GTPase Focal_AT PF03623.13 GAJ46233.1 - 0.061 13.3 0.5 0.26 11.3 0.1 2.1 2 0 0 2 2 2 0 Focal adhesion targeting region Cyc-maltodext_C PF10438.9 GAJ46233.1 - 0.21 11.7 1.5 4.9 7.3 0.1 2.6 1 1 1 2 2 2 0 Cyclo-malto-dextrinase C-terminal domain SecG PF03840.14 GAJ46234.1 - 1.7e-10 40.8 6.0 2.5e-10 40.3 6.0 1.2 1 0 0 1 1 1 1 Preprotein translocase SecG subunit GPDPase_memb PF10110.9 GAJ46234.1 - 0.0033 16.2 1.4 0.004 16.0 1.4 1.0 1 0 0 1 1 1 1 Membrane domain of glycerophosphoryl diester phosphodiesterase EIID-AGA PF03613.14 GAJ46234.1 - 0.029 13.6 0.6 0.029 13.6 0.6 1.1 1 0 0 1 1 1 0 PTS system mannose/fructose/sorbose family IID component Lig_chan PF00060.26 GAJ46234.1 - 0.13 12.1 0.0 0.16 11.8 0.0 1.2 1 0 0 1 1 1 0 Ligand-gated ion channel SecE PF00584.20 GAJ46235.1 - 1.2e-10 41.2 3.5 1.4e-10 40.9 3.5 1.2 1 0 0 1 1 1 1 SecE/Sec61-gamma subunits of protein translocation complex KAP PF05804.12 GAJ46235.1 - 0.0071 14.6 0.1 0.0078 14.4 0.1 1.0 1 0 0 1 1 1 1 Kinesin-associated protein (KAP) NusG PF02357.19 GAJ46236.1 - 2.1e-16 60.2 0.0 3e-16 59.7 0.0 1.2 1 0 0 1 1 1 1 Transcription termination factor nusG KOW PF00467.29 GAJ46236.1 - 0.02 14.8 0.0 0.066 13.2 0.0 1.9 1 0 0 1 1 1 0 KOW motif Ribosomal_L11_N PF03946.14 GAJ46237.1 - 3.4e-26 90.9 0.2 5.4e-26 90.2 0.2 1.3 1 0 0 1 1 1 1 Ribosomal protein L11, N-terminal domain Ribosomal_L11 PF00298.19 GAJ46237.1 - 6.2e-19 68.3 0.2 1e-18 67.6 0.2 1.3 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Ribosomal_L1 PF00687.21 GAJ46238.1 - 8.7e-41 139.9 0.0 1.1e-40 139.6 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family Phenol_hyd_sub PF06099.11 GAJ46238.1 - 0.0093 16.0 0.0 0.026 14.5 0.0 1.7 1 0 0 1 1 1 1 Phenol hydroxylase subunit Ribosomal_L10 PF00466.20 GAJ46239.1 - 2.8e-15 56.3 0.0 3.7e-15 55.9 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L10 Ribosomal_L12 PF00542.19 GAJ46240.1 - 1.1e-20 73.7 4.9 2.4e-20 72.6 4.9 1.6 1 0 0 1 1 1 1 Ribosomal protein L7/L12 C-terminal domain Ribosomal_L12_N PF16320.5 GAJ46240.1 - 1.2e-15 57.0 2.3 1.2e-15 57.0 2.3 1.6 2 0 0 2 2 2 1 Ribosomal protein L7/L12 dimerisation domain RNA_pol_Rpb2_6 PF00562.28 GAJ46241.1 - 3.2e-149 497.3 0.1 5.1e-148 493.3 0.0 2.2 2 0 0 2 2 2 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_3 PF04565.16 GAJ46241.1 - 2e-28 98.4 0.0 9.2e-28 96.2 0.0 2.2 3 0 0 3 3 3 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_1 PF04563.15 GAJ46241.1 - 9.9e-24 84.0 0.0 4.1e-23 82.0 0.0 2.0 1 1 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_7 PF04560.20 GAJ46241.1 - 4.8e-22 78.2 0.1 1.3e-21 76.8 0.1 1.8 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_2 PF04561.14 GAJ46241.1 - 1.5e-21 76.9 0.0 1.2e-15 57.7 0.0 2.6 2 0 0 2 2 2 2 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_45 PF10385.9 GAJ46241.1 - 2.7e-15 56.4 2.5 6.2e-15 55.2 1.2 2.4 3 0 0 3 3 3 1 RNA polymerase beta subunit external 1 domain RNA_pol_Rpb1_1 PF04997.12 GAJ46242.1 - 2.6e-83 280.0 0.0 4.2e-83 279.2 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_5 PF04998.17 GAJ46242.1 - 3.9e-62 210.1 0.1 6.2e-62 209.4 0.1 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 RNA_pol_Rpb1_2 PF00623.20 GAJ46242.1 - 1.3e-38 132.8 0.0 1.6e-27 96.7 0.0 2.5 1 1 1 2 2 2 2 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.18 GAJ46242.1 - 9.5e-21 74.4 0.0 2.4e-20 73.1 0.0 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_4 PF05000.17 GAJ46242.1 - 2.1e-11 43.7 0.0 5.5e-11 42.4 0.0 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 Biotin_lipoyl_2 PF13533.6 GAJ46242.1 - 8.3e-09 35.1 0.8 0.21 11.4 0.1 3.6 3 0 0 3 3 3 3 Biotin-lipoyl like Apocytochr_F_C PF01333.19 GAJ46242.1 - 0.00076 19.5 0.0 1.6 8.8 0.0 2.5 2 0 0 2 2 2 2 Apocytochrome F, C-terminal Peptidase_M23 PF01551.22 GAJ46242.1 - 0.022 14.9 1.5 30 4.9 0.1 4.4 5 1 0 5 5 5 0 Peptidase family M23 RnfC_N PF13375.6 GAJ46242.1 - 0.13 12.2 0.1 8.6 6.4 0.0 2.9 3 0 0 3 3 3 0 RnfC Barrel sandwich hybrid domain OxoDH_E1alpha_N PF12573.8 GAJ46242.1 - 0.15 11.8 0.2 0.46 10.3 0.2 1.8 1 0 0 1 1 1 0 2-oxoisovalerate dehydrogenase E1 alpha subunit N terminal YqfD PF06898.11 GAJ46242.1 - 0.21 10.4 0.6 1.4 7.7 0.0 2.4 3 0 0 3 3 3 0 Putative stage IV sporulation protein YqfD PGM_PMM_I PF02878.16 GAJ46243.1 - 4.2e-31 107.5 0.0 8.1e-31 106.6 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_III PF02880.16 GAJ46243.1 - 5.6e-20 71.7 0.1 1e-19 70.8 0.1 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_II PF02879.16 GAJ46243.1 - 1.2e-12 48.4 0.0 5.1e-12 46.3 0.0 2.1 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.20 GAJ46243.1 - 0.0017 18.5 0.0 0.0041 17.3 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain ACPS PF01648.20 GAJ46244.1 - 2.7e-21 75.8 0.0 3.3e-21 75.6 0.0 1.1 1 0 0 1 1 1 1 4'-phosphopantetheinyl transferase superfamily DUF3484 PF11983.8 GAJ46245.1 - 4.1 8.6 7.2 9.6 7.4 1.1 2.8 3 1 0 3 3 3 0 Membrane-attachment and polymerisation-promoting switch NusG PF02357.19 GAJ46246.1 - 2.7e-13 50.2 0.0 6.9e-13 48.9 0.0 1.6 1 1 1 2 2 2 1 Transcription termination factor nusG KOW PF00467.29 GAJ46246.1 - 0.021 14.8 0.0 0.037 14.0 0.0 1.4 1 0 0 1 1 1 0 KOW motif YfiO PF13525.6 GAJ46250.1 - 2.9e-48 164.3 2.2 3.6e-48 164.0 2.2 1.2 1 0 0 1 1 1 1 Outer membrane lipoprotein TPR_18 PF13512.6 GAJ46250.1 - 3.8e-21 75.7 5.4 7.8e-20 71.5 2.9 3.0 3 1 0 3 3 3 1 Tetratricopeptide repeat TPR_6 PF13174.6 GAJ46250.1 - 1.7e-08 34.5 2.5 1.4 9.8 0.0 5.4 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_16 PF13432.6 GAJ46250.1 - 4.4e-05 24.0 0.0 0.07 13.8 0.2 3.2 2 1 1 3 3 3 1 Tetratricopeptide repeat Stanniocalcin PF03298.13 GAJ46250.1 - 0.0088 15.4 0.0 0.014 14.7 0.0 1.2 1 0 0 1 1 1 1 Stanniocalcin family TPR_21 PF09976.9 GAJ46250.1 - 0.0097 15.6 0.2 0.026 14.2 0.1 1.6 1 1 1 2 2 2 1 Tetratricopeptide repeat-like domain TPR_2 PF07719.17 GAJ46250.1 - 0.17 12.1 2.2 18 5.8 0.0 3.5 3 0 0 3 3 3 0 Tetratricopeptide repeat ANAPC3 PF12895.7 GAJ46250.1 - 0.45 10.8 5.2 2.8 8.2 3.4 2.9 2 1 1 3 3 3 0 Anaphase-promoting complex, cyclosome, subunit 3 DivIC PF04977.15 GAJ46251.1 - 0.027 14.2 0.0 0.039 13.7 0.0 1.2 1 0 0 1 1 1 0 Septum formation initiator DUF4096 PF13340.6 GAJ46254.1 - 0.16 12.2 0.4 0.56 10.5 0.4 1.8 1 1 0 1 1 1 0 Putative transposase of IS4/5 family (DUF4096) GTP_EFTU PF00009.27 GAJ46255.1 - 2.1e-51 174.2 0.1 3.4e-51 173.6 0.1 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain LepA_C PF06421.12 GAJ46255.1 - 3.6e-48 162.2 0.2 7.8e-48 161.1 0.2 1.6 1 0 0 1 1 1 1 GTP-binding protein LepA C-terminus EFG_C PF00679.24 GAJ46255.1 - 6.6e-18 64.5 0.0 1.5e-17 63.4 0.0 1.6 1 0 0 1 1 1 1 Elongation factor G C-terminus EFG_II PF14492.6 GAJ46255.1 - 1.7e-08 34.4 0.0 5.4e-08 32.8 0.0 1.9 1 1 0 1 1 1 1 Elongation Factor G, domain II MMR_HSR1 PF01926.23 GAJ46255.1 - 9.1e-07 29.0 0.0 1.8e-06 28.0 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 GAJ46255.1 - 6.2e-06 26.5 0.2 1.7e-05 25.1 0.2 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 2 Ras PF00071.22 GAJ46255.1 - 0.00036 20.2 0.0 0.00069 19.3 0.0 1.3 1 0 0 1 1 1 1 Ras family PduV-EutP PF10662.9 GAJ46255.1 - 0.00095 18.9 0.1 0.0038 17.0 0.2 1.9 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation FeoB_N PF02421.18 GAJ46255.1 - 0.0011 18.5 0.3 0.0032 17.0 0.3 1.8 1 1 0 1 1 1 1 Ferrous iron transport protein B RF3_C PF16658.5 GAJ46255.1 - 0.0069 16.2 0.0 0.012 15.5 0.0 1.4 1 0 0 1 1 1 1 Class II release factor RF3, C-terminal domain AAA_23 PF13476.6 GAJ46255.1 - 0.01 16.4 0.1 0.021 15.3 0.0 1.5 2 0 0 2 2 1 0 AAA domain MMR_HSR1_Xtn PF16897.5 GAJ46255.1 - 0.022 14.7 0.0 0.058 13.4 0.0 1.7 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain Roc PF08477.13 GAJ46255.1 - 0.028 14.6 0.0 0.06 13.6 0.0 1.6 1 1 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase KAP PF05804.12 GAJ46255.1 - 0.12 10.5 0.1 0.17 10.0 0.1 1.1 1 0 0 1 1 1 0 Kinesin-associated protein (KAP) ATP_bind_3 PF01171.20 GAJ46255.1 - 0.15 11.8 0.1 0.24 11.2 0.1 1.4 1 0 0 1 1 1 0 PP-loop family Trypsin_2 PF13365.6 GAJ46257.1 - 1.3e-25 91.1 0.2 1.9e-25 90.5 0.2 1.3 1 0 0 1 1 1 1 Trypsin-like peptidase domain PDZ_2 PF13180.6 GAJ46257.1 - 3.1e-20 72.3 1.8 1.5e-13 50.9 0.1 3.0 3 0 0 3 3 3 2 PDZ domain PDZ PF00595.24 GAJ46257.1 - 1.8e-13 50.7 1.6 8.1e-11 42.1 0.4 3.1 2 1 0 2 2 2 2 PDZ domain PDZ_6 PF17820.1 GAJ46257.1 - 3e-11 43.0 0.8 1e-10 41.3 0.1 2.1 2 0 0 2 2 2 1 PDZ domain Trypsin PF00089.26 GAJ46257.1 - 2.2e-07 30.9 0.0 3.7e-07 30.2 0.0 1.2 1 0 0 1 1 1 1 Trypsin HlyD_3 PF13437.6 GAJ46257.1 - 0.00046 20.8 0.4 0.0055 17.4 0.1 2.7 2 1 1 3 3 3 1 HlyD family secretion protein Peptidase_S29 PF02907.15 GAJ46257.1 - 0.01 15.6 0.0 0.039 13.7 0.0 1.8 2 0 0 2 2 2 0 Hepatitis C virus NS3 protease Tricorn_PDZ PF14685.6 GAJ46257.1 - 0.041 13.8 0.2 0.14 12.1 0.1 1.9 2 0 0 2 2 2 0 Tricorn protease PDZ domain DUF31 PF01732.16 GAJ46257.1 - 0.047 13.2 0.0 6.9 6.1 0.0 2.2 2 0 0 2 2 2 0 Putative peptidase (DUF31) Peptidase_S46 PF10459.9 GAJ46257.1 - 0.37 9.4 1.2 0.6 8.7 0.3 1.6 2 0 0 2 2 2 0 Peptidase S46 NusB PF01029.18 GAJ46258.1 - 3.8e-16 59.6 0.0 4.8e-16 59.2 0.0 1.2 1 0 0 1 1 1 1 NusB family DHDPS PF00701.22 GAJ46259.1 - 1e-44 152.4 0.0 1.4e-44 152.0 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family OMP_b-brl PF13505.6 GAJ46260.1 - 5.3e-07 29.9 0.5 8.5e-07 29.3 0.5 1.3 1 1 0 1 1 1 1 Outer membrane protein beta-barrel domain MtrB_PioB PF11854.8 GAJ46260.1 - 0.00043 18.8 0.1 0.00052 18.5 0.1 1.2 1 0 0 1 1 1 1 Putative outer membrane beta-barrel porin, MtrB/PioB OmpA_membrane PF01389.17 GAJ46260.1 - 0.0021 17.8 0.0 0.0027 17.4 0.0 1.4 1 1 0 1 1 1 1 OmpA-like transmembrane domain DUF4236 PF14020.6 GAJ46261.1 - 0.057 14.0 2.0 0.11 13.1 2.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4236) Alpha_GJ PF03229.13 GAJ46261.1 - 3.7 8.1 6.4 3.4 8.2 2.6 2.1 2 0 0 2 2 2 0 Alphavirus glycoprotein J Radical_SAM PF04055.21 GAJ46263.1 - 2.2e-12 47.7 0.0 3.9e-12 46.9 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily LIAS_N PF16881.5 GAJ46263.1 - 1e-06 29.1 0.1 2.1e-06 28.1 0.1 1.6 1 0 0 1 1 1 1 N-terminal domain of lipoyl synthase of Radical_SAM family Peptidase_M17 PF00883.21 GAJ46264.1 - 3.1e-110 368.3 0.0 3.7e-110 368.1 0.0 1.1 1 0 0 1 1 1 1 Cytosol aminopeptidase family, catalytic domain PEP-utilizers_C PF02896.18 GAJ46265.1 - 1.2e-69 234.7 0.0 1.8e-69 234.1 0.0 1.3 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PPDK_N PF01326.19 GAJ46265.1 - 5.8e-34 117.8 0.1 3.4e-21 75.9 0.0 3.4 2 1 1 3 3 3 2 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers PF00391.23 GAJ46265.1 - 8.8e-17 60.6 0.7 1.7e-16 59.7 0.7 1.4 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain Glyoxal_oxid_N PF07250.11 GAJ46265.1 - 0.14 11.3 0.0 0.25 10.5 0.0 1.4 1 0 0 1 1 1 0 Glyoxal oxidase N-terminus CTP_transf_1 PF01148.20 GAJ46267.1 - 5.8e-33 114.8 16.9 7.6e-33 114.4 16.9 1.1 1 0 0 1 1 1 1 Cytidylyltransferase family DUF2754 PF10953.8 GAJ46267.1 - 0.0078 16.4 1.7 0.0078 16.4 1.7 2.5 3 0 0 3 3 3 1 Protein of unknown function (DUF2754) LIM_bind PF01803.16 GAJ46267.1 - 0.25 10.8 0.0 0.35 10.4 0.0 1.1 1 0 0 1 1 1 0 LIM-domain binding protein MafB19-deam PF14437.6 GAJ46268.1 - 1.9e-25 89.2 0.0 2.4e-25 88.9 0.0 1.1 1 0 0 1 1 1 1 MafB19-like deaminase dCMP_cyt_deam_1 PF00383.23 GAJ46268.1 - 2.2e-21 75.6 0.0 3.1e-21 75.2 0.0 1.2 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region SNAD4 PF18750.1 GAJ46268.1 - 0.0003 20.9 0.1 0.00053 20.1 0.1 1.3 1 0 0 1 1 1 1 Secreted Novel AID/APOBEC-like Deaminase 4 APOBEC2 PF18772.1 GAJ46268.1 - 0.0032 17.6 0.1 0.0045 17.1 0.1 1.2 1 0 0 1 1 1 1 APOBEC2 NAD2 PF18782.1 GAJ46268.1 - 0.0049 17.0 0.0 0.0075 16.4 0.0 1.2 1 0 0 1 1 1 1 Novel AID APOBEC clade 2 NAD1 PF18778.1 GAJ46268.1 - 0.0067 16.5 0.1 0.01 15.9 0.1 1.3 1 0 0 1 1 1 1 Novel AID APOBEC clade 1 Bd3614-deam PF14439.6 GAJ46268.1 - 0.077 13.1 0.7 0.077 13.1 0.7 2.3 1 1 1 2 2 2 0 Bd3614-like deaminase PrgI PF12666.7 GAJ46269.1 - 5.1 7.9 8.1 11 6.8 3.7 2.3 2 1 0 2 2 2 0 PrgI family protein Ribosomal_L17 PF01196.19 GAJ46270.1 - 0.35 11.8 5.4 0.98 10.4 2.9 3.0 2 1 0 2 2 2 0 Ribosomal protein L17 Cob_adeno_trans PF01923.18 GAJ46270.1 - 0.42 10.7 8.6 1.9 8.6 1.6 3.5 2 1 1 3 3 3 0 Cobalamin adenosyltransferase Peptidase_S41 PF03572.18 GAJ46271.1 - 8.4e-42 142.6 0.1 1.5e-41 141.8 0.1 1.4 1 0 0 1 1 1 1 Peptidase family S41 PDZ_2 PF13180.6 GAJ46271.1 - 5.5e-07 29.8 0.9 1.2e-06 28.7 0.1 2.0 2 0 0 2 2 2 1 PDZ domain PDZ_6 PF17820.1 GAJ46271.1 - 2.9e-06 27.0 0.0 7e-06 25.8 0.0 1.6 1 0 0 1 1 1 1 PDZ domain PDZ PF00595.24 GAJ46271.1 - 0.00043 20.6 0.0 0.0011 19.3 0.0 1.7 1 0 0 1 1 1 1 PDZ domain GRASP55_65 PF04495.14 GAJ46271.1 - 0.058 13.7 0.0 0.13 12.6 0.0 1.5 1 0 0 1 1 1 0 GRASP55/65 PDZ-like domain BAG PF02179.16 GAJ46271.1 - 0.072 13.5 0.0 0.61 10.6 0.0 2.2 2 0 0 2 2 2 0 BAG domain Fimbrial_PilY2 PF14481.6 GAJ46271.1 - 0.088 12.5 0.1 0.38 10.4 0.0 2.1 2 0 0 2 2 2 0 Type 4 fimbrial biogenesis protein PilY2 CDP-OH_P_transf PF01066.21 GAJ46272.1 - 1.1e-13 51.8 0.3 1.1e-13 51.8 0.3 2.4 3 0 0 3 3 3 1 CDP-alcohol phosphatidyltransferase DUF3504 PF12012.8 GAJ46273.1 - 0.016 15.1 6.4 0.02 14.8 5.9 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF3504) ATP-synt_F6 PF05511.11 GAJ46273.1 - 0.14 12.5 5.9 0.094 13.1 3.2 2.1 1 1 1 2 2 2 0 Mitochondrial ATP synthase coupling factor 6 MRJP PF03022.16 GAJ46273.1 - 0.17 11.3 2.2 0.23 10.8 2.2 1.2 1 0 0 1 1 1 0 Major royal jelly protein DASH_Dad4 PF08650.10 GAJ46273.1 - 0.19 11.8 6.4 7.3 6.6 0.2 3.5 1 1 2 3 3 3 0 DASH complex subunit Dad4 Methyltransf_14 PF08484.11 GAJ46273.1 - 0.38 10.5 6.0 0.074 12.9 2.0 1.8 2 0 0 2 2 2 0 C-methyltransferase C-terminal domain BPL_N PF09825.9 GAJ46273.1 - 0.57 9.2 8.0 0.8 8.7 8.0 1.4 1 0 0 1 1 1 0 Biotin-protein ligase, N terminal CortBP2 PF09727.9 GAJ46273.1 - 0.65 9.9 24.9 2.1 8.2 14.4 2.2 1 1 1 2 2 2 0 Cortactin-binding protein-2 AAA-ATPase_like PF09820.9 GAJ46273.1 - 1 8.7 15.4 4.2 6.7 10.6 2.5 1 1 1 2 2 2 0 Predicted AAA-ATPase Nup54 PF13874.6 GAJ46273.1 - 1.3 9.2 9.3 1.8 8.7 0.5 2.2 1 1 1 2 2 2 0 Nucleoporin complex subunit 54 Rx_N PF18052.1 GAJ46273.1 - 2 8.8 11.2 0.15 12.3 3.2 2.8 1 1 2 3 3 3 0 Rx N-terminal domain TetR_C_13 PF16925.5 GAJ46273.1 - 2.1 8.3 5.1 5.1 7.1 0.7 2.4 1 1 1 2 2 2 0 Tetracyclin repressor-like, C-terminal domain UPF0242 PF06785.11 GAJ46273.1 - 2.7 8.0 28.2 47 4.0 27.7 2.3 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus YtxH PF12732.7 GAJ46273.1 - 4.2 8.0 7.3 23 5.6 4.9 2.9 1 1 1 2 2 2 0 YtxH-like protein LMBR1 PF04791.16 GAJ46273.1 - 4.3 6.1 7.1 5.4 5.8 7.1 1.3 1 0 0 1 1 1 0 LMBR1-like membrane protein DUF4490 PF14892.6 GAJ46274.1 - 0.013 15.5 0.1 0.041 13.9 0.1 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF4490) Spc7 PF08317.11 GAJ46274.1 - 0.77 8.6 52.3 0.34 9.8 28.4 3.1 1 1 2 3 3 3 0 Spc7 kinetochore protein Med28 PF11594.8 GAJ46274.1 - 2.3 8.3 21.5 0.19 11.8 9.3 3.2 1 1 2 3 3 3 0 Mediator complex subunit 28 TolA_bind_tri PF16331.5 GAJ46274.1 - 2.3 8.3 26.8 1.2 9.3 13.1 4.3 2 2 2 4 4 4 0 TolA binding protein trimerisation ADIP PF11559.8 GAJ46274.1 - 4 7.5 49.9 0.39 10.8 16.0 3.8 2 2 0 3 3 3 0 Afadin- and alpha -actinin-Binding DUF948 PF06103.11 GAJ46274.1 - 4.1 7.7 19.1 6.5 7.1 3.9 4.4 2 2 1 3 3 3 0 Bacterial protein of unknown function (DUF948) Titin_Ig-rpts PF06582.12 GAJ46274.1 - 6.6 6.8 7.9 0.36 10.8 1.1 2.6 3 0 0 3 3 3 0 Titin repeat RVT_connect PF06815.13 GAJ46274.1 - 6.7 7.0 8.5 19 5.6 1.2 2.8 2 2 0 2 2 2 0 Reverse transcriptase connection domain OMP_b-brl PF13505.6 GAJ46275.1 - 8.8e-08 32.5 1.0 2.5e-07 31.0 0.1 2.2 2 1 1 3 3 3 1 Outer membrane protein beta-barrel domain OmpA_membrane PF01389.17 GAJ46275.1 - 0.0032 17.2 0.0 0.0051 16.6 0.0 1.3 1 0 0 1 1 1 1 OmpA-like transmembrane domain Opacity PF02462.15 GAJ46275.1 - 0.03 14.4 0.0 0.056 13.5 0.0 1.4 1 0 0 1 1 1 0 Opacity family porin protein RimM PF01782.18 GAJ46276.1 - 2.6e-10 40.4 0.0 3.9e-10 39.8 0.0 1.3 1 0 0 1 1 1 1 RimM N-terminal domain YchF-GTPase_C PF06071.13 GAJ46277.1 - 1.7e-39 133.8 0.8 3.2e-39 133.0 0.2 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF933) MMR_HSR1 PF01926.23 GAJ46277.1 - 2e-23 82.6 0.0 5.5e-23 81.2 0.0 1.8 1 1 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 GAJ46277.1 - 2.8e-08 33.5 0.0 3.1e-07 30.0 0.0 2.6 2 1 0 2 2 2 1 Ferrous iron transport protein B Dynamin_N PF00350.23 GAJ46277.1 - 0.061 13.4 0.2 8.6 6.4 0.0 2.7 2 1 1 3 3 3 0 Dynamin family MeaB PF03308.16 GAJ46277.1 - 0.12 11.4 0.0 0.22 10.5 0.0 1.4 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Ribosomal_L19 PF01245.20 GAJ46278.1 - 5.8e-39 132.5 0.7 7e-39 132.2 0.7 1.1 1 0 0 1 1 1 1 Ribosomal protein L19 PseudoU_synth_2 PF00849.22 GAJ46279.1 - 8.9e-13 48.6 0.0 4.6e-12 46.3 0.0 1.9 1 1 0 1 1 1 1 RNA pseudouridylate synthase S4 PF01479.25 GAJ46279.1 - 3.1e-05 23.6 0.1 6.3e-05 22.6 0.1 1.5 1 0 0 1 1 1 1 S4 domain ProQ PF04352.13 GAJ46279.1 - 0.14 12.0 0.0 0.25 11.3 0.0 1.4 1 0 0 1 1 1 0 ProQ/FINO family CBS PF00571.28 GAJ46280.1 - 1.7e-12 47.6 0.5 6.8e-05 23.2 0.1 2.6 2 0 0 2 2 2 2 CBS domain SIS PF01380.22 GAJ46280.1 - 1.4e-11 44.3 0.1 2.9e-11 43.3 0.0 1.5 2 0 0 2 2 2 1 SIS domain HSP70 PF00012.20 GAJ46282.1 - 2.5e-58 197.7 0.0 1.3e-56 192.0 0.0 2.0 1 1 0 1 1 1 1 Hsp70 protein DUF3730 PF12530.8 GAJ46282.1 - 0.061 12.9 0.0 0.099 12.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3730) HSP70 PF00012.20 GAJ46283.1 - 3.5e-29 101.5 0.1 4.4e-26 91.2 0.0 2.0 1 1 0 2 2 2 2 Hsp70 protein MreB_Mbl PF06723.13 GAJ46283.1 - 2.2e-06 26.7 0.0 4.3e-06 25.8 0.0 1.5 2 0 0 2 2 2 1 MreB/Mbl protein NAD_binding_3 PF03447.16 GAJ46283.1 - 0.0096 16.6 0.1 0.061 14.0 0.0 2.0 2 0 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain DUF460 PF04312.13 GAJ46283.1 - 0.092 12.5 0.0 0.21 11.3 0.0 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF460) WHEP-TRS PF00458.20 GAJ46283.1 - 0.11 12.6 0.0 0.37 11.0 0.0 1.8 2 0 0 2 2 2 0 WHEP-TRS domain DnaJ PF00226.31 GAJ46284.1 - 1.4e-06 28.3 0.0 3.6e-06 27.0 0.0 1.6 2 0 0 2 2 2 1 DnaJ domain DUF1996 PF09362.10 GAJ46284.1 - 0.0012 19.0 0.0 0.0013 18.8 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1996) HTH_23 PF13384.6 GAJ46285.1 - 0.0026 17.5 0.0 0.0038 17.0 0.0 1.2 1 0 0 1 1 1 1 Homeodomain-like domain LRR_4 PF12799.7 GAJ46287.1 - 1.3e-09 38.2 0.3 0.00051 20.4 0.0 4.1 2 1 4 6 6 6 3 Leucine Rich repeats (2 copies) LRR_9 PF14580.6 GAJ46287.1 - 0.011 15.3 0.4 0.077 12.5 0.1 2.4 1 1 0 2 2 2 0 Leucine-rich repeat S4 PF01479.25 GAJ46287.1 - 0.11 12.3 0.1 0.23 11.2 0.1 1.5 1 0 0 1 1 1 0 S4 domain S4_2 PF13275.6 GAJ46287.1 - 0.11 12.4 0.0 0.19 11.6 0.0 1.4 1 0 0 1 1 1 0 S4 domain LRR_8 PF13855.6 GAJ46287.1 - 0.29 10.9 1.4 2.6 7.9 0.2 2.9 2 1 2 4 4 4 0 Leucine rich repeat FNIP PF05725.12 GAJ46287.1 - 0.55 10.4 6.6 0.55 10.4 1.1 3.3 3 1 0 3 3 3 0 FNIP Repeat MazG PF03819.17 GAJ46289.1 - 0.0089 16.2 0.2 0.016 15.4 0.2 1.5 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain dUTPase_2 PF08761.11 GAJ46289.1 - 0.079 13.1 1.8 0.34 11.0 1.8 1.9 1 1 0 1 1 1 0 dUTPase Radical_SAM PF04055.21 GAJ46291.1 - 4.8e-16 59.6 0.0 7.4e-16 59.0 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily HemN_C PF06969.16 GAJ46291.1 - 0.15 12.1 0.4 0.46 10.6 0.4 1.9 1 1 0 1 1 1 0 HemN C-terminal domain Sec16 PF12932.7 GAJ46291.1 - 0.17 12.4 0.1 0.42 11.2 0.1 1.8 1 1 0 1 1 1 0 Vesicle coat trafficking protein Sec16 mid-region tRNA-synt_1g PF09334.11 GAJ46292.1 - 1.6e-103 346.5 0.5 2.7e-63 214.1 0.0 2.1 1 1 1 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1 PF00133.22 GAJ46292.1 - 5.3e-29 100.9 1.9 1.1e-19 70.1 0.0 3.4 1 1 2 3 3 3 3 tRNA synthetases class I (I, L, M and V) tRNA-synt_1e PF01406.19 GAJ46292.1 - 2.6e-16 59.9 0.0 6.5e-08 32.3 0.0 2.9 3 0 0 3 3 3 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 GAJ46292.1 - 0.0031 16.5 0.0 0.11 11.4 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetases class I (K) Anticodon_1 PF08264.13 GAJ46292.1 - 0.02 14.8 0.5 0.47 10.4 0.1 2.9 3 0 0 3 3 3 0 Anticodon-binding domain of tRNA DUF1441 PF07278.11 GAJ46292.1 - 0.16 11.9 0.0 0.37 10.7 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1441) tRNA-synt_1d PF00750.19 GAJ46292.1 - 0.16 10.9 0.1 0.38 9.7 0.1 1.5 2 0 0 2 2 2 0 tRNA synthetases class I (R) NUDIX PF00293.28 GAJ46294.1 - 3.8e-20 72.2 0.0 5.1e-20 71.9 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain Inositol_P PF00459.25 GAJ46295.1 - 5e-48 164.0 0.0 6.4e-48 163.6 0.0 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family LON_substr_bdg PF02190.16 GAJ46296.1 - 2.3e-12 47.2 1.3 2.6e-12 47.1 1.3 1.1 1 0 0 1 1 1 1 ATP-dependent protease La (LON) substrate-binding domain Lon_C PF05362.13 GAJ46297.1 - 8.1e-72 241.1 0.4 1.6e-71 240.1 0.4 1.4 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA PF00004.29 GAJ46297.1 - 6.3e-23 81.6 0.0 9.3e-22 77.9 0.0 2.5 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 GAJ46297.1 - 2e-09 37.6 0.0 1.3e-08 34.9 0.0 2.4 3 1 0 3 3 2 1 AAA domain (dynein-related subfamily) AAA_2 PF07724.14 GAJ46297.1 - 1.9e-08 34.6 0.0 1.4e-07 31.8 0.0 2.3 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 GAJ46297.1 - 2.2e-06 27.5 0.0 7.2e-05 22.6 0.0 2.7 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_PrkA PF08298.11 GAJ46297.1 - 3.5e-05 22.9 0.0 9.1e-05 21.5 0.0 1.6 1 1 1 2 2 2 1 PrkA AAA domain ChlI PF13541.6 GAJ46297.1 - 5.6e-05 23.0 0.0 0.00011 22.1 0.0 1.5 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase AAA_16 PF13191.6 GAJ46297.1 - 7.5e-05 23.2 0.5 0.00024 21.5 0.1 2.1 2 1 0 2 2 1 1 AAA ATPase domain AAA_22 PF13401.6 GAJ46297.1 - 0.00011 22.5 0.9 0.0031 17.8 0.0 3.1 2 1 0 2 2 2 1 AAA domain AAA_18 PF13238.6 GAJ46297.1 - 0.00039 21.0 1.2 0.00096 19.7 0.1 2.3 3 0 0 3 3 1 1 AAA domain IstB_IS21 PF01695.17 GAJ46297.1 - 0.0021 17.8 0.1 0.0054 16.5 0.0 1.7 2 0 0 2 2 1 1 IstB-like ATP binding protein TsaE PF02367.17 GAJ46297.1 - 0.0021 18.0 0.3 0.035 14.1 0.0 2.6 2 0 0 2 2 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_24 PF13479.6 GAJ46297.1 - 0.0032 17.2 0.0 0.011 15.5 0.0 1.9 1 0 0 1 1 1 1 AAA domain RNA_helicase PF00910.22 GAJ46297.1 - 0.0033 17.8 0.1 0.055 13.9 0.0 2.7 3 0 0 3 3 2 1 RNA helicase AAA_3 PF07726.11 GAJ46297.1 - 0.0036 17.2 0.0 0.02 14.8 0.0 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 GAJ46297.1 - 0.0037 17.0 0.0 0.012 15.4 0.0 1.8 1 0 0 1 1 1 1 AAA domain ABC_tran PF00005.27 GAJ46297.1 - 0.0078 16.7 1.0 0.032 14.7 0.1 2.4 2 0 0 2 2 2 1 ABC transporter AAA_14 PF13173.6 GAJ46297.1 - 0.017 15.2 0.1 0.099 12.7 0.0 2.4 3 0 0 3 3 2 0 AAA domain TIP49 PF06068.13 GAJ46297.1 - 0.022 14.0 0.0 0.051 12.8 0.0 1.6 1 0 0 1 1 1 0 TIP49 P-loop domain AAA_33 PF13671.6 GAJ46297.1 - 0.033 14.3 0.0 0.081 13.1 0.0 1.7 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 GAJ46297.1 - 0.035 14.0 0.0 0.14 12.1 0.0 2.0 2 0 0 2 2 1 0 Rad17 P-loop domain NACHT PF05729.12 GAJ46297.1 - 0.048 13.6 0.5 0.31 10.9 0.0 2.5 3 0 0 3 3 3 0 NACHT domain NB-ARC PF00931.22 GAJ46297.1 - 0.051 12.8 0.5 0.1 11.8 0.0 1.8 2 0 0 2 2 2 0 NB-ARC domain Sigma54_activat PF00158.26 GAJ46297.1 - 0.06 13.1 0.0 0.14 11.8 0.0 1.6 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_17 PF13207.6 GAJ46297.1 - 0.062 13.7 4.8 0.079 13.4 0.0 3.1 3 0 0 3 3 3 0 AAA domain DEAD PF00270.29 GAJ46297.1 - 0.077 12.8 0.0 0.73 9.6 0.0 2.5 2 1 1 3 3 2 0 DEAD/DEAH box helicase Arena_nucleocap PF00843.17 GAJ46297.1 - 0.086 11.7 0.4 0.17 10.7 0.4 1.5 1 0 0 1 1 1 0 Arenavirus nucleocapsid N-terminal domain SMC_N PF02463.19 GAJ46297.1 - 0.089 12.2 0.0 10 5.5 0.0 2.5 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain ATP-synt_ab PF00006.25 GAJ46297.1 - 0.095 12.3 0.0 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Cytidylate_kin PF02224.18 GAJ46297.1 - 0.14 11.8 0.1 0.27 10.9 0.1 1.5 1 0 0 1 1 1 0 Cytidylate kinase RsgA_GTPase PF03193.16 GAJ46297.1 - 0.18 11.7 0.8 0.36 10.7 0.0 1.9 3 0 0 3 3 1 0 RsgA GTPase SRP54 PF00448.22 GAJ46297.1 - 0.19 11.3 1.1 3.5 7.2 0.1 2.6 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain SKI PF01202.22 GAJ46297.1 - 0.23 11.6 0.0 0.23 11.6 0.0 2.0 2 0 0 2 2 2 0 Shikimate kinase AAA_19 PF13245.6 GAJ46297.1 - 0.44 10.9 2.0 0.5 10.7 0.0 2.1 3 0 0 3 3 1 0 AAA domain AAA_28 PF13521.6 GAJ46297.1 - 0.59 10.4 2.0 1.5 9.1 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_11 PF13086.6 GAJ46297.1 - 1.2 8.9 0.0 1.2 8.9 0.0 2.2 1 1 1 2 2 2 0 AAA domain SPOUT_MTase PF02590.17 GAJ46298.1 - 9.8e-26 90.6 0.0 2.2e-25 89.5 0.0 1.5 1 1 0 1 1 1 1 Predicted SPOUT methyltransferase TLC PF03219.14 GAJ46299.1 - 1.5e-149 498.9 12.9 1.8e-149 498.7 12.9 1.0 1 0 0 1 1 1 1 TLC ATP/ADP transporter PDR_CDR PF06422.12 GAJ46299.1 - 3.4 7.6 5.4 0.8 9.6 0.8 2.4 2 0 0 2 2 2 0 CDR ABC transporter RNase_T PF00929.24 GAJ46300.1 - 7e-32 111.3 0.0 1e-31 110.7 0.0 1.2 1 0 0 1 1 1 1 Exonuclease DUF5051 PF16473.5 GAJ46300.1 - 0.0005 20.1 0.0 0.0015 18.5 0.0 1.8 1 1 0 1 1 1 1 3' exoribonuclease, RNase T-like DNA_pol_A_exo1 PF01612.20 GAJ46300.1 - 0.0093 15.7 0.0 0.16 11.7 0.0 2.5 1 1 1 2 2 2 1 3'-5' exonuclease EF-G-binding_N PF07299.11 GAJ46302.1 - 0.0029 18.1 2.7 0.0029 18.1 2.7 1.9 2 0 0 2 2 2 1 Elongation factor G-binding protein, N-terminal Noelin-1 PF12308.8 GAJ46302.1 - 1 9.4 9.3 0.29 11.1 5.9 1.8 2 0 0 2 2 2 0 Neurogenesis glycoprotein CHDCT2 PF08074.11 GAJ46302.1 - 1.1 9.5 7.1 0.26 11.5 3.9 1.6 2 0 0 2 2 2 0 CHDCT2 (NUC038) domain DHR10 PF18595.1 GAJ46302.1 - 8.1 6.5 19.7 1.1 9.3 11.4 2.5 2 0 0 2 2 2 0 Designed helical repeat protein 10 domain CHASE3 PF05227.13 GAJ46302.1 - 9.5 6.1 10.4 0.12 12.3 1.7 2.1 3 0 0 3 3 3 0 CHASE3 domain Mur_ligase_M PF08245.12 GAJ46306.1 - 8.3e-29 100.9 0.0 1.9e-27 96.5 0.0 2.1 1 1 0 1 1 1 1 Mur ligase middle domain Mur_ligase_C PF02875.21 GAJ46306.1 - 8.7e-19 67.6 0.0 2.9e-17 62.7 0.0 2.5 2 0 0 2 2 2 1 Mur ligase family, glutamate ligase domain BolA PF01722.18 GAJ46307.1 - 2.7e-14 53.2 0.0 3e-14 53.0 0.0 1.2 1 0 0 1 1 1 1 BolA-like protein SAICAR_synt PF01259.18 GAJ46308.1 - 4.5e-08 33.0 0.0 6.7e-08 32.5 0.0 1.3 1 1 0 1 1 1 1 SAICAR synthetase Colicin_V PF02674.16 GAJ46309.1 - 4.3e-24 85.1 5.3 5.3e-24 84.8 5.3 1.2 1 0 0 1 1 1 1 Colicin V production protein RhodobacterPufX PF11511.8 GAJ46309.1 - 0.096 12.3 0.6 0.21 11.2 0.6 1.5 1 0 0 1 1 1 0 Intrinsic membrane protein PufX PIG-Y PF15159.6 GAJ46309.1 - 3.7 8.6 7.5 27 5.8 6.6 2.4 2 1 0 2 2 2 0 Phosphatidylinositol N-acetylglucosaminyltransferase subunit Y TcpE PF12648.7 GAJ46309.1 - 8.5 7.0 7.7 2.4 8.8 0.3 2.2 2 0 0 2 2 2 0 TcpE family TPR_1 PF00515.28 GAJ46310.1 - 4.7e-06 26.2 0.7 0.00022 20.9 0.6 3.1 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_16 PF13432.6 GAJ46310.1 - 6.3e-06 26.8 0.0 4.8e-05 23.9 0.0 2.1 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_2 PF07719.17 GAJ46310.1 - 0.00012 22.0 4.3 0.0023 17.9 1.0 3.4 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_6 PF13174.6 GAJ46310.1 - 0.0002 21.8 0.4 1.1 10.1 0.3 3.7 3 1 0 3 3 3 1 Tetratricopeptide repeat PknG_TPR PF16918.5 GAJ46310.1 - 0.00063 18.6 0.0 0.00086 18.1 0.0 1.2 1 0 0 1 1 1 1 Protein kinase G tetratricopeptide repeat ANAPC3 PF12895.7 GAJ46310.1 - 0.0016 18.6 3.3 0.016 15.4 0.3 2.5 1 1 1 2 2 2 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_12 PF13424.6 GAJ46310.1 - 0.0039 17.4 1.1 0.11 12.8 0.1 2.9 3 1 0 3 3 3 1 Tetratricopeptide repeat TPR_19 PF14559.6 GAJ46310.1 - 0.024 15.1 0.1 4.9 7.7 0.1 2.8 2 1 0 2 2 2 0 Tetratricopeptide repeat TPR_7 PF13176.6 GAJ46310.1 - 0.024 14.6 0.1 14 6.0 0.0 2.8 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_8 PF13181.6 GAJ46310.1 - 0.025 14.8 3.0 6.8 7.2 0.7 4.0 4 1 1 5 5 5 0 Tetratricopeptide repeat RPN7 PF10602.9 GAJ46310.1 - 0.029 14.1 1.5 0.3 10.8 0.1 2.5 2 0 0 2 2 2 0 26S proteasome subunit RPN7 DUF4988 PF16378.5 GAJ46310.1 - 0.07 12.8 0.0 0.1 12.2 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function TPR_3 PF07720.12 GAJ46310.1 - 0.11 12.5 2.0 0.24 11.4 1.5 1.8 2 0 0 2 2 1 0 Tetratricopeptide repeat TPR_17 PF13431.6 GAJ46310.1 - 0.19 12.2 1.7 0.6 10.6 0.1 2.7 4 0 0 4 4 3 0 Tetratricopeptide repeat Glutaredoxin PF00462.24 GAJ46311.1 - 2.3e-14 53.3 0.0 3.4e-14 52.8 0.0 1.3 1 0 0 1 1 1 1 Glutaredoxin Phage_integrase PF00589.22 GAJ46312.1 - 2.7e-34 118.4 0.0 4.1e-34 117.8 0.0 1.3 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.17 GAJ46312.1 - 8.1e-15 54.9 1.7 1.7e-13 50.7 0.4 3.1 3 1 0 3 3 3 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 GAJ46312.1 - 1.1e-07 32.2 1.5 2e-07 31.4 0.4 2.0 3 0 0 3 3 3 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 GAJ46312.1 - 0.013 15.8 0.2 4.1 7.8 0.0 2.7 2 1 0 3 3 3 0 Phage integrase SAM-like domain Phage_integr_3 PF16795.5 GAJ46312.1 - 0.027 14.4 0.2 7.2 6.5 0.0 2.5 3 0 0 3 3 3 0 Archaeal phage integrase FMN_red PF03358.15 GAJ46313.1 - 7.1e-13 48.6 0.0 9e-13 48.2 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 GAJ46313.1 - 6.9e-09 35.7 0.0 1.1e-08 35.1 0.0 1.3 1 1 0 1 1 1 1 Flavodoxin-like fold HTH_23 PF13384.6 GAJ46314.1 - 0.00094 18.9 0.0 0.0015 18.3 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain HTH_psq PF05225.16 GAJ46314.1 - 0.0088 15.8 0.1 0.016 15.0 0.1 1.5 1 0 0 1 1 1 1 helix-turn-helix, Psq domain HTH_7 PF02796.15 GAJ46314.1 - 0.0091 16.0 0.0 0.014 15.4 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_38 PF13936.6 GAJ46314.1 - 0.01 15.6 0.0 0.015 15.0 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.6 GAJ46314.1 - 0.015 14.8 0.0 0.026 14.1 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding GerE PF00196.19 GAJ46314.1 - 0.041 13.4 0.0 0.061 12.9 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 GAJ46314.1 - 0.054 13.2 0.0 0.096 12.4 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 PUA_3 PF17785.1 GAJ46314.1 - 0.057 13.2 0.0 0.095 12.5 0.0 1.4 1 0 0 1 1 1 0 PUA-like domain DUF2802 PF10975.8 GAJ46314.1 - 0.094 12.9 0.0 0.16 12.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2802) HTH_28 PF13518.6 GAJ46314.1 - 0.11 12.7 0.0 0.17 12.0 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Tnp_4 PF13613.6 GAJ46314.1 - 0.12 12.2 0.0 0.2 11.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease KH_6 PF15985.5 GAJ46315.1 - 0.072 13.5 0.0 0.11 12.9 0.0 1.3 1 0 0 1 1 1 0 KH domain MraZ PF02381.18 GAJ46316.1 - 1.1e-18 67.0 0.0 2.9e-08 33.6 0.0 2.1 2 0 0 2 2 2 2 MraZ protein, putative antitoxin-like Methyltransf_5 PF01795.19 GAJ46317.1 - 3.6e-82 276.3 0.0 1.4e-81 274.4 0.0 1.7 1 1 0 1 1 1 1 MraW methylase family Methyltransf_25 PF13649.6 GAJ46317.1 - 0.049 14.3 0.0 0.19 12.5 0.0 2.0 2 0 0 2 2 2 0 Methyltransferase domain DUF3847 PF12958.7 GAJ46319.1 - 0.002 18.2 0.4 0.0026 17.8 0.4 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3847) DivIC PF04977.15 GAJ46319.1 - 0.016 15.0 0.0 0.023 14.5 0.0 1.2 1 0 0 1 1 1 0 Septum formation initiator Asp_Glu_race PF01177.22 GAJ46320.1 - 3.6e-17 63.0 0.1 4.8e-17 62.6 0.1 1.2 1 0 0 1 1 1 1 Asp/Glu/Hydantoin racemase HTH_Tnp_IS630 PF01710.16 GAJ46321.1 - 1.9e-05 24.7 0.0 2.1e-05 24.6 0.0 1.0 1 0 0 1 1 1 1 Transposase DDE_Tnp_1 PF01609.21 GAJ46322.1 - 0.00025 20.8 0.0 0.0003 20.5 0.0 1.1 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.12 GAJ46322.1 - 0.077 12.2 0.0 0.084 12.1 0.0 1.1 1 0 0 1 1 1 0 Archaeal putative transposase ISC1217 AAA_2 PF07724.14 GAJ46325.1 - 1.3e-55 188.1 0.0 3e-54 183.7 0.0 2.7 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) AAA_lid_9 PF17871.1 GAJ46325.1 - 8.5e-35 118.8 0.6 8.5e-35 118.8 0.6 3.0 2 1 1 3 3 3 1 AAA lid domain ClpB_D2-small PF10431.9 GAJ46325.1 - 2.5e-25 88.3 0.1 1.4e-24 85.9 0.1 2.4 1 0 0 1 1 1 1 C-terminal, D2-small domain, of ClpB protein AAA PF00004.29 GAJ46325.1 - 5.4e-24 85.1 0.0 9.6e-13 48.7 0.0 3.2 2 1 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 GAJ46325.1 - 2.6e-18 66.4 0.7 5.4e-12 45.9 0.0 4.2 3 1 0 3 3 3 2 AAA domain (dynein-related subfamily) Clp_N PF02861.20 GAJ46325.1 - 3.6e-11 43.0 5.9 2.2e-09 37.3 1.5 3.6 4 0 0 4 4 3 1 Clp amino terminal domain, pathogenicity island component AAA_16 PF13191.6 GAJ46325.1 - 8.2e-10 39.3 13.1 2.4e-05 24.8 0.1 5.1 4 2 1 5 5 5 2 AAA ATPase domain AAA_22 PF13401.6 GAJ46325.1 - 1.3e-08 35.2 8.2 0.011 16.0 0.1 5.6 4 2 0 4 4 4 2 AAA domain Sigma54_activat PF00158.26 GAJ46325.1 - 7.6e-07 29.0 0.0 0.0022 17.7 0.0 2.7 2 0 0 2 2 2 2 Sigma-54 interaction domain IstB_IS21 PF01695.17 GAJ46325.1 - 9.4e-07 28.7 0.1 0.037 13.8 0.0 3.3 3 0 0 3 3 3 2 IstB-like ATP binding protein AAA_7 PF12775.7 GAJ46325.1 - 1.1e-06 28.3 0.0 0.0053 16.3 0.0 2.9 3 0 0 3 3 2 2 P-loop containing dynein motor region ATPase_2 PF01637.18 GAJ46325.1 - 3.4e-06 27.1 0.6 0.95 9.3 0.0 3.9 4 0 0 4 4 3 2 ATPase domain predominantly from Archaea AAA_18 PF13238.6 GAJ46325.1 - 5.4e-06 27.0 0.7 0.21 12.1 0.0 3.9 4 0 0 4 4 3 2 AAA domain Mg_chelatase PF01078.21 GAJ46325.1 - 3.9e-05 23.1 0.0 0.28 10.5 0.0 3.3 3 0 0 3 3 3 2 Magnesium chelatase, subunit ChlI AAA_28 PF13521.6 GAJ46325.1 - 4.5e-05 23.8 0.0 1.5 9.0 0.0 4.2 3 0 0 3 3 3 2 AAA domain TniB PF05621.11 GAJ46325.1 - 0.00013 21.4 0.0 0.29 10.5 0.0 4.0 3 1 0 3 3 3 1 Bacterial TniB protein AAA_24 PF13479.6 GAJ46325.1 - 0.00015 21.6 0.0 0.66 9.7 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_14 PF13173.6 GAJ46325.1 - 0.00038 20.5 0.0 1.7 8.7 0.0 3.3 3 0 0 3 3 2 2 AAA domain NACHT PF05729.12 GAJ46325.1 - 0.00048 20.1 0.0 0.26 11.2 0.0 2.9 2 0 0 2 2 2 1 NACHT domain RNA_helicase PF00910.22 GAJ46325.1 - 0.00059 20.2 0.0 1.8 9.0 0.0 2.7 2 0 0 2 2 2 2 RNA helicase RsgA_GTPase PF03193.16 GAJ46325.1 - 0.00063 19.7 0.1 3.3 7.6 0.0 3.4 3 0 0 3 3 3 2 RsgA GTPase RuvB_N PF05496.12 GAJ46325.1 - 0.0007 19.4 3.6 2.1 8.1 0.0 4.1 3 1 0 3 3 3 1 Holliday junction DNA helicase RuvB P-loop domain AAA_33 PF13671.6 GAJ46325.1 - 0.00078 19.6 0.0 2.8 8.1 0.0 3.3 2 0 0 2 2 2 2 AAA domain TsaE PF02367.17 GAJ46325.1 - 0.00091 19.2 0.0 2 8.4 0.0 2.9 3 0 0 3 3 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE Roc PF08477.13 GAJ46325.1 - 0.0012 19.1 0.0 1.3 9.2 0.0 2.7 2 0 0 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase DUF815 PF05673.13 GAJ46325.1 - 0.0013 18.0 0.6 0.36 9.9 0.0 3.6 3 1 0 3 3 3 1 Protein of unknown function (DUF815) ResIII PF04851.15 GAJ46325.1 - 0.0077 16.2 0.3 16 5.5 0.0 4.1 4 0 0 4 4 4 0 Type III restriction enzyme, res subunit DNA_pol3_delta2 PF13177.6 GAJ46325.1 - 0.012 15.4 0.0 0.4 10.4 0.0 2.9 2 0 0 2 2 2 0 DNA polymerase III, delta subunit AAA_30 PF13604.6 GAJ46325.1 - 0.014 15.2 0.3 5.7 6.6 0.0 4.0 2 1 1 3 3 3 0 AAA domain ABC_tran PF00005.27 GAJ46325.1 - 0.017 15.6 1.0 2.2 8.8 0.0 3.6 3 1 1 4 4 3 0 ABC transporter Zeta_toxin PF06414.12 GAJ46325.1 - 0.021 14.1 0.0 6.2 6.0 0.0 3.3 3 0 0 3 3 2 0 Zeta toxin AAA_19 PF13245.6 GAJ46325.1 - 0.023 15.1 0.0 1 9.7 0.0 3.1 3 0 0 3 3 2 0 AAA domain AAA_25 PF13481.6 GAJ46325.1 - 0.026 14.1 0.1 1.1 8.9 0.0 2.8 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.15 GAJ46325.1 - 0.032 14.1 0.0 6.4 6.6 0.0 3.0 2 0 0 2 2 2 0 NTPase AAA_3 PF07726.11 GAJ46325.1 - 0.067 13.0 0.0 21 5.0 0.0 3.2 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 GAJ46325.1 - 0.071 12.9 0.0 11 5.9 0.0 2.5 2 0 0 2 2 2 0 P-loop containing region of AAA domain ATP_bind_1 PF03029.17 GAJ46325.1 - 0.12 12.2 0.0 14 5.4 0.0 2.6 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_23 PF13476.6 GAJ46325.1 - 0.42 11.1 0.0 0.42 11.1 0.0 3.9 3 2 1 4 4 3 0 AAA domain DUF87 PF01935.17 GAJ46325.1 - 1.2 9.2 9.5 3.9 7.5 0.0 4.6 5 0 0 5 5 5 0 Helicase HerA, central domain Bac_transf PF02397.16 GAJ46326.1 - 1.9e-51 174.3 0.0 2.3e-51 174.0 0.0 1.1 1 0 0 1 1 1 1 Bacterial sugar transferase Na_H_Exchanger PF00999.21 GAJ46327.1 - 1.5e-42 145.8 44.6 2e-42 145.3 44.6 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.18 GAJ46327.1 - 1.5e-17 63.9 0.0 2.5e-17 63.2 0.0 1.3 1 0 0 1 1 1 1 TrkA-N domain AAA_31 PF13614.6 GAJ46329.1 - 1.2e-57 194.7 0.1 1.5e-57 194.3 0.1 1.1 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 GAJ46329.1 - 1.2e-26 93.2 0.0 1.7e-26 92.8 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain CBP_BcsQ PF06564.12 GAJ46329.1 - 5.7e-15 55.4 0.0 1.3e-14 54.3 0.0 1.5 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ MipZ PF09140.11 GAJ46329.1 - 3.6e-11 42.9 0.1 2.8e-06 26.8 0.1 2.1 2 0 0 2 2 2 2 ATPase MipZ ParA PF10609.9 GAJ46329.1 - 5.3e-11 42.4 0.2 3.4e-09 36.5 0.1 2.4 2 1 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase Fer4_NifH PF00142.18 GAJ46329.1 - 2.3e-08 33.9 0.0 1.4e-06 28.0 0.1 2.1 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.15 GAJ46329.1 - 6.1e-07 28.9 1.1 1.8e-06 27.4 0.3 2.0 2 1 0 2 2 2 1 Anion-transporting ATPase SRP54 PF00448.22 GAJ46329.1 - 0.0016 18.1 0.3 0.04 13.6 0.3 2.2 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain CLP1_P PF16575.5 GAJ46329.1 - 0.0085 15.9 0.1 0.14 11.9 0.0 2.2 2 0 0 2 2 2 1 mRNA cleavage and polyadenylation factor CLP1 P-loop VirC1 PF07015.11 GAJ46329.1 - 0.016 14.5 0.3 0.054 12.8 0.1 1.9 2 1 0 2 2 2 0 VirC1 protein BTB_3 PF16017.5 GAJ46329.1 - 0.052 13.7 0.0 0.2 11.8 0.0 2.0 2 0 0 2 2 2 0 BTB/POZ domain ATP_bind_1 PF03029.17 GAJ46329.1 - 0.075 12.8 0.1 0.22 11.3 0.1 1.8 1 1 0 1 1 1 0 Conserved hypothetical ATP binding protein Glyco_trans_1_4 PF13692.6 GAJ46329.1 - 0.1 13.1 0.0 0.21 12.0 0.0 1.6 1 0 0 1 1 1 0 Glycosyl transferases group 1 AAA_24 PF13479.6 GAJ46329.1 - 0.19 11.4 0.1 0.4 10.4 0.1 1.5 1 1 0 1 1 1 0 AAA domain FTHFS PF01268.19 GAJ46329.1 - 0.19 9.9 0.5 0.25 9.5 0.5 1.1 1 0 0 1 1 1 0 Formate--tetrahydrofolate ligase SRP54 PF00448.22 GAJ46330.1 - 9.9e-55 185.2 0.0 2e-54 184.2 0.0 1.5 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_30 PF13604.6 GAJ46330.1 - 7e-06 25.9 0.0 1.2e-05 25.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 GAJ46330.1 - 1.1e-05 25.9 0.0 1.7e-05 25.3 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 GAJ46330.1 - 0.00029 21.1 0.0 0.00055 20.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain cobW PF02492.19 GAJ46330.1 - 0.00038 20.1 0.0 0.0042 16.7 0.0 2.1 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain DUF2075 PF09848.9 GAJ46330.1 - 0.00046 19.5 0.0 0.00065 19.1 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) ABC_tran PF00005.27 GAJ46330.1 - 0.0019 18.7 0.0 0.0032 18.0 0.0 1.4 1 0 0 1 1 1 1 ABC transporter NACHT PF05729.12 GAJ46330.1 - 0.0024 17.8 0.1 0.0068 16.3 0.1 1.8 2 0 0 2 2 1 1 NACHT domain AAA_28 PF13521.6 GAJ46330.1 - 0.0031 17.8 0.3 0.0098 16.2 0.2 1.9 1 1 1 2 2 2 1 AAA domain Zeta_toxin PF06414.12 GAJ46330.1 - 0.0077 15.5 0.0 0.016 14.5 0.0 1.5 2 0 0 2 2 2 1 Zeta toxin CbiA PF01656.23 GAJ46330.1 - 0.011 15.8 0.0 0.08 13.0 0.0 2.2 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain MMR_HSR1 PF01926.23 GAJ46330.1 - 0.011 15.8 0.2 0.037 14.1 0.2 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase Helicase_RecD PF05127.14 GAJ46330.1 - 0.015 15.2 0.0 0.021 14.7 0.0 1.2 1 0 0 1 1 1 0 Helicase AAA_33 PF13671.6 GAJ46330.1 - 0.016 15.4 0.4 0.037 14.2 0.2 1.8 2 1 0 2 2 2 0 AAA domain AAA PF00004.29 GAJ46330.1 - 0.016 15.6 0.1 0.045 14.2 0.1 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.6 GAJ46330.1 - 0.018 15.6 0.0 0.11 13.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain Arf PF00025.21 GAJ46330.1 - 0.023 14.2 0.0 0.045 13.2 0.0 1.4 1 0 0 1 1 1 0 ADP-ribosylation factor family AAA_14 PF13173.6 GAJ46330.1 - 0.026 14.6 0.1 0.24 11.4 0.1 2.1 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 GAJ46330.1 - 0.037 13.9 0.0 0.097 12.6 0.0 1.6 1 1 0 1 1 1 0 NTPase APS_kinase PF01583.20 GAJ46330.1 - 0.041 13.8 0.3 0.1 12.5 0.0 1.8 2 0 0 2 2 2 0 Adenylylsulphate kinase TBPIP PF07106.13 GAJ46330.1 - 0.08 12.9 0.0 19 5.3 0.0 2.7 2 0 0 2 2 2 0 TBPIP/Hop2 winged helix domain DLIC PF05783.11 GAJ46330.1 - 0.089 11.6 0.0 6.1 5.6 0.0 2.1 2 0 0 2 2 2 0 Dynein light intermediate chain (DLIC) AAA_24 PF13479.6 GAJ46330.1 - 0.13 11.9 0.0 0.21 11.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain SRPRB PF09439.10 GAJ46330.1 - 0.14 11.6 0.2 3.5 7.0 0.0 2.6 2 1 0 3 3 3 0 Signal recognition particle receptor beta subunit ResIII PF04851.15 GAJ46330.1 - 0.15 12.0 0.5 3.3 7.7 0.5 2.2 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit RrnaAD PF00398.20 GAJ46331.1 - 3.8e-42 144.2 0.0 4.2e-42 144.0 0.0 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase DDE_3 PF13358.6 GAJ46335.1 - 0.0053 16.5 0.0 0.0068 16.2 0.0 1.1 1 0 0 1 1 1 1 DDE superfamily endonuclease TAL_FSA PF00923.19 GAJ46337.1 - 4e-46 157.6 0.0 4.8e-46 157.4 0.0 1.0 1 0 0 1 1 1 1 Transaldolase/Fructose-6-phosphate aldolase DUF2232 PF09991.9 GAJ46337.1 - 0.019 14.2 0.6 0.025 13.8 0.6 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2232) tRNA-synt_2 PF00152.20 GAJ46339.1 - 2.3e-95 319.3 0.0 2.8e-95 319.0 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) GAD PF02938.14 GAJ46339.1 - 1.3e-17 63.8 0.0 1.2e-16 60.7 0.0 2.1 2 0 0 2 2 2 1 GAD domain tRNA_anti-codon PF01336.25 GAJ46339.1 - 1.6e-12 47.3 0.0 2.8e-12 46.4 0.0 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 GAJ46339.1 - 0.011 15.3 0.0 5.2 6.5 0.0 2.3 2 0 0 2 2 2 0 tRNA synthetases class II core domain (F) tRNA-synt_2b PF00587.25 GAJ46339.1 - 0.099 12.6 0.0 0.22 11.5 0.0 1.8 1 1 0 1 1 1 0 tRNA synthetase class II core domain (G, H, P, S and T) NDK PF00334.19 GAJ46340.1 - 5.8e-36 123.5 0.0 6.5e-36 123.3 0.0 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase HTH_23 PF13384.6 GAJ46343.1 - 0.011 15.5 0.0 0.021 14.6 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain HTH_38 PF13936.6 GAJ46343.1 - 0.012 15.3 0.0 0.043 13.6 0.0 1.9 1 1 1 2 2 2 0 Helix-turn-helix domain ABC_tran PF00005.27 GAJ46344.1 - 8.3e-35 120.3 0.0 1.4e-34 119.5 0.0 1.4 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.23 GAJ46344.1 - 5.4e-20 72.2 16.6 6.8e-20 71.8 16.6 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region SMC_N PF02463.19 GAJ46344.1 - 0.00048 19.6 4.6 0.0052 16.2 1.6 2.8 2 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 GAJ46344.1 - 0.002 18.0 0.7 1.4 8.7 0.0 2.4 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system MMR_HSR1 PF01926.23 GAJ46344.1 - 0.0032 17.6 0.1 0.0093 16.0 0.1 1.8 2 0 0 2 2 2 1 50S ribosome-binding GTPase Septin PF00735.18 GAJ46344.1 - 0.015 14.6 0.0 0.025 13.9 0.0 1.3 1 0 0 1 1 1 0 Septin RsgA_GTPase PF03193.16 GAJ46344.1 - 0.021 14.7 0.0 0.046 13.6 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_16 PF13191.6 GAJ46344.1 - 0.038 14.4 0.4 0.14 12.5 0.0 2.0 2 1 0 2 2 2 0 AAA ATPase domain cobW PF02492.19 GAJ46344.1 - 0.058 13.0 0.0 0.1 12.2 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_29 PF13555.6 GAJ46344.1 - 0.06 13.1 0.1 0.14 11.9 0.1 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain MeaB PF03308.16 GAJ46344.1 - 0.12 11.3 0.0 0.18 10.7 0.0 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB ABC_ATPase PF09818.9 GAJ46344.1 - 0.13 11.1 0.0 0.21 10.3 0.0 1.3 1 0 0 1 1 1 0 Predicted ATPase of the ABC class DUF4748 PF15932.5 GAJ46344.1 - 0.14 11.9 0.1 0.32 10.8 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4748) AAA_24 PF13479.6 GAJ46344.1 - 0.16 11.7 0.0 0.32 10.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 GAJ46344.1 - 0.16 12.1 0.0 0.37 11.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 GAJ46344.1 - 0.17 12.2 0.2 0.8 10.0 0.1 2.3 2 1 0 2 2 2 0 AAA domain GCV_T PF01571.21 GAJ46345.1 - 0.00091 18.7 0.0 0.0012 18.2 0.0 1.1 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain FlgT_N PF16548.5 GAJ46346.1 - 0.061 13.9 0.2 0.073 13.6 0.2 1.0 1 0 0 1 1 1 0 Flagellar assembly protein T, N-terminal domain V_ATPase_I PF01496.19 GAJ46347.1 - 0.024 12.6 7.7 0.027 12.4 7.7 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Presenilin PF01080.17 GAJ46347.1 - 0.025 13.4 9.6 0.03 13.1 9.6 1.0 1 0 0 1 1 1 0 Presenilin NOA36 PF06524.12 GAJ46347.1 - 0.083 12.2 16.5 0.093 12.0 16.5 1.2 1 0 0 1 1 1 0 NOA36 protein NPR3 PF03666.13 GAJ46347.1 - 0.26 10.0 12.8 0.27 10.0 12.8 1.0 1 0 0 1 1 1 0 Nitrogen Permease regulator of amino acid transport activity 3 SID-1_RNA_chan PF13965.6 GAJ46347.1 - 0.37 9.1 2.5 0.4 9.0 2.5 1.0 1 0 0 1 1 1 0 dsRNA-gated channel SID-1 Astro_capsid_p PF12226.8 GAJ46347.1 - 0.41 9.7 13.8 0.47 9.6 13.8 1.1 1 0 0 1 1 1 0 Turkey astrovirus capsid protein Vfa1 PF08432.10 GAJ46347.1 - 0.43 10.9 21.3 0.52 10.6 21.3 1.2 1 0 0 1 1 1 0 AAA-ATPase Vps4-associated protein 1 MAP17 PF15807.5 GAJ46347.1 - 0.46 10.7 11.0 0.63 10.3 11.0 1.2 1 0 0 1 1 1 0 Membrane-associated protein 117 kDa, PDZK1-interacting protein 1 PPL5 PF18168.1 GAJ46347.1 - 0.74 9.0 10.7 0.87 8.8 10.7 1.1 1 0 0 1 1 1 0 Prim-pol family 5 Peptidase_S49_N PF08496.10 GAJ46347.1 - 0.91 9.6 10.0 1.1 9.3 10.0 1.2 1 0 0 1 1 1 0 Peptidase family S49 N-terminal DUF913 PF06025.12 GAJ46347.1 - 1.8 7.5 9.8 1.9 7.4 9.8 1.1 1 0 0 1 1 1 0 Domain of Unknown Function (DUF913) Zip PF02535.22 GAJ46347.1 - 1.8 7.7 9.3 2 7.5 9.3 1.1 1 0 0 1 1 1 0 ZIP Zinc transporter PI3K_1B_p101 PF10486.9 GAJ46347.1 - 2.1 6.0 10.1 2.3 5.9 10.1 1.1 1 0 0 1 1 1 0 Phosphoinositide 3-kinase gamma adapter protein p101 subunit PAF PF15715.5 GAJ46347.1 - 2.3 8.8 17.0 3 8.5 17.0 1.1 1 0 0 1 1 1 0 PCNA-associated factor histone like domain DUF2428 PF10350.9 GAJ46347.1 - 2.4 7.3 6.5 2.7 7.1 6.5 1.2 1 0 0 1 1 1 0 Putative death-receptor fusion protein (DUF2428) PseudoU_synth_1 PF01416.20 GAJ46348.1 - 2.4e-31 108.4 0.2 3.8e-24 85.2 0.0 2.1 2 0 0 2 2 2 2 tRNA pseudouridine synthase Peptidase_M23 PF01551.22 GAJ46349.1 - 1.7e-32 111.5 0.9 2.9e-32 110.8 0.9 1.4 1 0 0 1 1 1 1 Peptidase family M23 MlaE PF02405.16 GAJ46352.1 - 4.8e-59 199.6 15.8 5.6e-59 199.4 15.8 1.1 1 0 0 1 1 1 1 Permease MlaE BON PF04972.17 GAJ46353.1 - 5.7e-14 52.2 0.8 3.8e-11 43.1 0.5 2.1 2 0 0 2 2 2 2 BON domain HTH_23 PF13384.6 GAJ46354.1 - 2.3e-05 24.0 0.1 3.7e-05 23.4 0.1 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.6 GAJ46354.1 - 5e-05 23.2 0.2 0.00021 21.3 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn helix PRP3 PF08572.10 GAJ46354.1 - 0.0017 18.1 0.9 0.002 17.9 0.9 1.1 1 0 0 1 1 1 1 pre-mRNA processing factor 3 (PRP3) HTH_32 PF13565.6 GAJ46354.1 - 0.004 17.7 0.4 0.0055 17.3 0.4 1.2 1 0 0 1 1 1 1 Homeodomain-like domain HTH_38 PF13936.6 GAJ46354.1 - 0.0048 16.6 1.7 0.079 12.7 0.1 2.2 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_28 PF13518.6 GAJ46354.1 - 0.0059 16.7 0.1 0.014 15.5 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 GAJ46354.1 - 0.016 14.9 0.2 0.023 14.4 0.0 1.5 2 0 0 2 2 2 0 Sigma-70, region 4 POTRA PF07244.15 GAJ46357.1 - 2.1e-39 134.0 7.9 2.5e-13 50.4 0.4 5.4 5 0 0 5 5 5 4 Surface antigen variable number repeat Bac_surface_Ag PF01103.23 GAJ46357.1 - 1.2e-36 126.8 6.4 1.9e-36 126.2 6.4 1.3 1 0 0 1 1 1 1 Surface antigen POTRA_2 PF08479.11 GAJ46357.1 - 1.4e-08 34.4 0.5 0.00025 20.8 0.0 4.3 4 0 0 4 4 4 1 POTRA domain, ShlB-type Lectin_like PF18560.1 GAJ46357.1 - 0.0032 17.6 0.2 0.031 14.4 0.0 2.7 3 0 0 3 3 3 1 Lectin like domain POTRA_1 PF08478.10 GAJ46357.1 - 0.0083 16.4 0.9 4.5 7.7 0.0 3.5 3 1 0 3 3 3 1 POTRA domain, FtsQ-type HTH_23 PF13384.6 GAJ46358.1 - 0.0006 19.5 0.0 0.00092 18.9 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain HTH_19 PF12844.7 GAJ46358.1 - 0.007 16.4 0.0 0.012 15.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 GAJ46358.1 - 0.0074 16.2 0.0 0.0095 15.9 0.0 1.2 1 0 0 1 1 1 1 HTH domain HTH_6 PF01418.17 GAJ46358.1 - 0.015 15.2 0.1 0.03 14.3 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family HTH_38 PF13936.6 GAJ46358.1 - 0.029 14.1 0.0 0.042 13.6 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_7 PF02796.15 GAJ46358.1 - 0.05 13.7 0.0 0.069 13.2 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase Sigma70_r4_2 PF08281.12 GAJ46358.1 - 0.063 13.0 0.0 0.16 11.7 0.0 1.6 2 0 0 2 2 2 0 Sigma-70, region 4 DUF1016_N PF17761.1 GAJ46358.1 - 0.088 13.0 0.0 0.097 12.8 0.0 1.2 1 0 0 1 1 1 0 DUF1016 N-terminal domain HTH_24 PF13412.6 GAJ46358.1 - 0.15 11.6 0.0 0.19 11.3 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 GAJ46358.1 - 0.16 11.8 0.0 0.22 11.4 0.0 1.2 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain CTP_synth_N PF06418.14 GAJ46359.1 - 9.5e-101 336.6 0.0 1.5e-100 335.9 0.0 1.3 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.28 GAJ46359.1 - 1.3e-49 168.6 0.0 2.3e-49 167.7 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 GAJ46359.1 - 1.3e-09 38.2 0.3 3.3e-08 33.6 0.3 2.7 2 1 0 2 2 2 1 Peptidase C26 CbiA PF01656.23 GAJ46359.1 - 0.0029 17.6 0.0 0.0051 16.9 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain GATase_3 PF07685.14 GAJ46359.1 - 0.067 12.8 0.0 0.14 11.8 0.0 1.6 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain Herpes_UL1 PF05259.11 GAJ46359.1 - 0.15 12.1 0.0 0.3 11.2 0.0 1.4 1 0 0 1 1 1 0 Herpesvirus glycoprotein L UDG PF03167.19 GAJ46363.1 - 8.3e-36 123.3 0.0 1.1e-35 122.9 0.0 1.2 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily Ribosomal_S7 PF00177.21 GAJ46364.1 - 5.1e-59 198.2 0.9 5.6e-59 198.1 0.9 1.0 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e Phage_TAC_12 PF12363.8 GAJ46364.1 - 0.0055 17.1 0.0 0.019 15.3 0.0 1.7 2 0 0 2 2 2 1 Phage tail assembly chaperone protein, TAC Ribosom_S12_S23 PF00164.25 GAJ46365.1 - 3e-39 133.1 0.5 3.6e-39 132.9 0.5 1.1 1 0 0 1 1 1 1 Ribosomal protein S12/S23 Ribosomal_S9 PF00380.19 GAJ46366.1 - 6.8e-41 139.6 0.0 8.6e-41 139.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S9/S16 Ribosomal_L13 PF00572.18 GAJ46367.1 - 6.8e-42 142.7 0.0 8.4e-42 142.4 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L13 Ribosomal_S16 PF00886.19 GAJ46368.1 - 1.8e-18 66.4 0.0 2.4e-18 65.9 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S16 DUF179 PF02622.15 GAJ46369.1 - 6e-27 94.6 0.0 7.4e-27 94.3 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized ACR, COG1678 YajC PF02699.15 GAJ46370.1 - 5.2e-20 71.1 0.0 6.3e-20 70.8 0.0 1.1 1 0 0 1 1 1 1 Preprotein translocase subunit Orf78 PF06024.12 GAJ46370.1 - 0.011 16.0 0.1 0.014 15.7 0.1 1.2 1 0 0 1 1 1 0 Orf78 (ac78) Dala_Dala_lig_C PF07478.13 GAJ46371.1 - 1.3e-50 171.8 0.0 1.6e-50 171.5 0.0 1.1 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus Dala_Dala_lig_N PF01820.21 GAJ46371.1 - 4e-19 69.0 0.0 1.1e-18 67.5 0.0 1.7 2 0 0 2 2 2 1 D-ala D-ala ligase N-terminus ATP-grasp PF02222.22 GAJ46371.1 - 1.4e-05 24.7 0.0 2.6e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.6 GAJ46371.1 - 0.00048 19.8 0.0 0.0043 16.7 0.0 2.0 1 1 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.14 GAJ46371.1 - 0.023 14.7 0.0 0.073 13.1 0.0 1.9 2 1 0 2 2 2 0 ATP-grasp domain GARS_A PF01071.19 GAJ46371.1 - 0.064 13.0 0.0 0.091 12.5 0.0 1.2 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain DUF917 PF06032.12 GAJ46371.1 - 0.074 11.9 0.0 0.1 11.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF917) Hexapep PF00132.24 GAJ46374.1 - 0.082 12.7 0.0 0.2 11.4 0.0 1.7 1 0 0 1 1 1 0 Bacterial transferase hexapeptide (six repeats) Exonuc_VII_L PF02601.15 GAJ46375.1 - 1.4e-72 244.9 0.0 2.1e-72 244.3 0.0 1.2 1 0 0 1 1 1 1 Exonuclease VII, large subunit tRNA_anti_2 PF13742.6 GAJ46375.1 - 6.9e-26 90.3 0.4 2.5e-25 88.5 0.5 1.9 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain tRNA_anti-codon PF01336.25 GAJ46375.1 - 3e-05 23.9 0.7 5.1e-05 23.2 0.2 1.7 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain DHQ_synthase PF01761.20 GAJ46375.1 - 0.00072 18.8 0.0 0.0015 17.8 0.0 1.4 1 0 0 1 1 1 1 3-dehydroquinate synthase ROF PF07073.12 GAJ46375.1 - 0.055 13.6 0.3 0.26 11.5 0.0 2.3 2 0 0 2 2 2 0 Modulator of Rho-dependent transcription termination (ROF) DDE_Tnp_1 PF01609.21 GAJ46376.1 - 2.3e-05 24.1 0.0 2.8e-05 23.9 0.0 1.1 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.12 GAJ46376.1 - 0.078 12.2 0.0 0.089 12.0 0.0 1.1 1 0 0 1 1 1 0 Archaeal putative transposase ISC1217 LGT PF01790.18 GAJ46377.1 - 1e-65 221.3 10.3 1.2e-65 221.2 10.3 1.0 1 0 0 1 1 1 1 Prolipoprotein diacylglyceryl transferase ATP-synt_ab PF00006.25 GAJ46378.1 - 1e-24 87.4 0.1 1.4e-24 86.9 0.1 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain Rho_RNA_bind PF07497.12 GAJ46378.1 - 5.9e-21 74.1 0.0 1.1e-20 73.3 0.0 1.4 1 0 0 1 1 1 1 Rho termination factor, RNA-binding domain Rho_N PF07498.12 GAJ46378.1 - 0.0034 17.3 0.1 0.0088 16.0 0.1 1.8 1 0 0 1 1 1 1 Rho termination factor, N-terminal domain NACHT PF05729.12 GAJ46378.1 - 0.0062 16.5 0.0 0.011 15.7 0.0 1.3 1 0 0 1 1 1 1 NACHT domain AAA PF00004.29 GAJ46378.1 - 0.0068 16.8 0.0 0.013 16.0 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 GAJ46378.1 - 0.0073 16.6 0.0 0.014 15.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.6 GAJ46378.1 - 0.012 15.2 0.1 0.065 12.8 0.1 2.0 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 GAJ46378.1 - 0.019 15.4 0.0 0.16 12.3 0.0 2.3 2 1 0 2 2 2 0 AAA ATPase domain ATPase_2 PF01637.18 GAJ46378.1 - 0.059 13.3 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_19 PF13245.6 GAJ46378.1 - 0.18 12.1 0.1 0.66 10.3 0.0 1.9 2 0 0 2 2 2 0 AAA domain Terminase_GpA PF05876.12 GAJ46378.1 - 0.2 10.2 0.0 3.4 6.1 0.0 2.0 2 0 0 2 2 2 0 Phage terminase large subunit (GpA) EamA PF00892.20 GAJ46379.1 - 4.2e-10 39.9 15.5 4.8e-10 39.7 15.5 1.0 1 0 0 1 1 1 1 EamA-like transporter family DUF2070 PF09843.9 GAJ46379.1 - 3.6 5.8 13.0 3.7 5.7 13.0 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Ribonuclease_P PF00825.18 GAJ46380.1 - 8.3e-09 35.5 0.3 1.1e-08 35.2 0.3 1.2 1 0 0 1 1 1 1 Ribonuclease P DUF3870 PF12986.7 GAJ46380.1 - 0.15 12.3 0.0 0.27 11.5 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3870) YidC_periplas PF14849.6 GAJ46381.1 - 1.6e-56 192.3 0.2 2e-56 192.0 0.2 1.1 1 0 0 1 1 1 1 YidC periplasmic domain 60KD_IMP PF02096.20 GAJ46381.1 - 1.1e-50 171.7 8.1 1.7e-50 171.2 8.1 1.2 1 0 0 1 1 1 1 60Kd inner membrane protein DUF2603 PF10788.9 GAJ46381.1 - 0.055 13.5 0.0 0.35 10.9 0.0 2.2 3 0 0 3 3 3 0 Protein of unknown function (DUF2603) MMR_HSR1 PF01926.23 GAJ46383.1 - 2.1e-17 63.2 0.0 2.7e-17 62.9 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 GAJ46383.1 - 2.5e-07 30.7 0.0 3.5e-05 23.8 0.0 2.1 2 0 0 2 2 2 1 RsgA GTPase FeoB_N PF02421.18 GAJ46383.1 - 6.6e-07 29.0 0.0 8.4e-07 28.6 0.0 1.2 1 0 0 1 1 1 1 Ferrous iron transport protein B PduV-EutP PF10662.9 GAJ46383.1 - 0.00011 21.9 0.1 0.0004 20.1 0.1 1.8 1 1 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation AIG1 PF04548.16 GAJ46383.1 - 0.00027 20.3 0.0 0.00037 19.9 0.0 1.2 1 0 0 1 1 1 1 AIG1 family GTP_EFTU PF00009.27 GAJ46383.1 - 0.0018 17.9 0.1 0.46 10.0 0.1 2.6 2 2 1 3 3 3 1 Elongation factor Tu GTP binding domain Ras PF00071.22 GAJ46383.1 - 0.0031 17.1 0.1 0.31 10.6 0.0 2.1 2 0 0 2 2 2 1 Ras family Roc PF08477.13 GAJ46383.1 - 0.004 17.4 0.2 0.0071 16.6 0.2 1.7 1 1 0 1 1 1 1 Ras of Complex, Roc, domain of DAPkinase Dynamin_N PF00350.23 GAJ46383.1 - 0.0052 16.9 0.3 0.084 12.9 0.3 2.2 1 1 1 2 2 2 1 Dynamin family MMR_HSR1_Xtn PF16897.5 GAJ46383.1 - 0.015 15.3 0.1 0.02 14.9 0.1 1.2 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain SRPRB PF09439.10 GAJ46383.1 - 0.017 14.5 0.0 0.036 13.5 0.0 1.4 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit AAA_18 PF13238.6 GAJ46383.1 - 0.03 14.9 0.0 0.041 14.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 GAJ46383.1 - 0.059 13.1 0.0 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_33 PF13671.6 GAJ46383.1 - 0.13 12.5 0.0 0.2 11.8 0.0 1.4 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 GAJ46383.1 - 0.15 12.5 0.0 0.25 11.8 0.0 1.4 1 0 0 1 1 1 0 RNA helicase MFS_1 PF07690.16 GAJ46384.1 - 5.6e-11 42.0 11.6 8.8e-11 41.3 10.6 1.7 1 1 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.24 GAJ46384.1 - 1.3e-05 24.3 1.6 1.3e-05 24.3 1.6 1.3 1 1 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 GAJ46385.1 - 3.1e-08 33.0 18.3 3.2e-08 32.9 18.3 1.0 1 0 0 1 1 1 1 Major Facilitator Superfamily MFS_1_like PF12832.7 GAJ46385.1 - 0.016 14.0 9.7 0.52 9.1 0.2 2.1 1 1 1 2 2 2 0 MFS_1 like family UvrD-helicase PF00580.21 GAJ46386.1 - 4.7e-66 223.4 0.0 7.7e-66 222.7 0.0 1.3 1 0 0 1 1 1 1 UvrD/REP helicase N-terminal domain AAA_19 PF13245.6 GAJ46386.1 - 8.3e-23 81.3 0.0 3.5e-22 79.3 0.0 2.1 2 1 0 2 2 2 1 AAA domain UvrD_C PF13361.6 GAJ46386.1 - 1.4e-22 80.5 0.0 2.9e-20 72.9 0.0 2.4 1 1 0 1 1 1 1 UvrD-like helicase C-terminal domain UvrD_C_2 PF13538.6 GAJ46386.1 - 9e-11 41.4 0.1 7.7e-05 22.4 0.1 2.6 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain AAA_30 PF13604.6 GAJ46386.1 - 8.1e-05 22.4 0.0 0.09 12.5 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.6 GAJ46386.1 - 0.0001 22.6 0.1 0.41 10.9 0.0 3.1 2 2 0 2 2 2 2 AAA domain PhoH PF02562.16 GAJ46386.1 - 0.0011 18.4 0.0 0.59 9.5 0.0 2.3 2 0 0 2 2 2 2 PhoH-like protein Viral_helicase1 PF01443.18 GAJ46386.1 - 0.0029 17.4 0.2 13 5.5 0.0 4.0 4 0 0 4 4 4 1 Viral (Superfamily 1) RNA helicase ResIII PF04851.15 GAJ46386.1 - 0.28 11.2 1.0 0.86 9.6 0.0 2.2 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit Y_phosphatase PF00102.27 GAJ46388.1 - 0.58 9.7 5.6 1.7 8.1 5.5 1.7 1 1 0 1 1 1 0 Protein-tyrosine phosphatase DNA_pol3_chi PF04364.13 GAJ46390.1 - 5.3e-14 52.5 0.4 7.4e-14 52.1 0.3 1.3 1 1 0 1 1 1 1 DNA polymerase III chi subunit, HolC NUDIX_5 PF16705.5 GAJ46391.1 - 0.018 14.8 0.0 0.019 14.7 0.0 1.1 1 0 0 1 1 1 0 NUDIX, or N-terminal NPxY motif-rich, region of KRIT LpxI_C PF06230.11 GAJ46392.1 - 1.7e-32 112.0 0.0 4e-32 110.9 0.0 1.6 2 0 0 2 2 2 1 LpxI C-terminal domain LpxI_N PF17930.1 GAJ46392.1 - 3.2e-26 91.7 0.0 5.3e-26 91.0 0.0 1.4 1 0 0 1 1 1 1 LpxI N-terminal domain Pterin_4a PF01329.19 GAJ46392.1 - 0.048 13.8 0.0 0.16 12.1 0.0 1.7 2 0 0 2 2 2 0 Pterin 4 alpha carbinolamine dehydratase CN_hydrolase PF00795.22 GAJ46393.1 - 2.3e-21 76.3 0.0 4.8e-21 75.3 0.0 1.5 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase DUF4022 PF13214.6 GAJ46393.1 - 0.22 11.8 1.7 0.56 10.5 1.7 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF4022) LpxC PF03331.13 GAJ46395.1 - 1.4e-70 237.9 0.0 1.7e-70 237.6 0.0 1.1 1 0 0 1 1 1 1 UDP-3-O-acyl N-acetylglycosamine deacetylase Bac_GDH PF05088.12 GAJ46396.1 - 1.2e-198 662.8 0.2 2.2e-188 628.7 0.0 2.3 1 1 1 2 2 2 2 Bacterial NAD-glutamate dehydrogenase ELFV_dehydrog PF00208.21 GAJ46396.1 - 4.3e-11 43.0 0.0 1.4e-10 41.3 0.0 1.8 1 1 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ATP-synt_A PF00119.20 GAJ46397.1 - 1.3e-51 175.6 26.2 1.5e-51 175.4 26.2 1.0 1 0 0 1 1 1 1 ATP synthase A chain DDE_Tnp_IS1 PF03400.13 GAJ46399.1 - 0.00011 22.5 0.0 0.00012 22.4 0.0 1.1 1 0 0 1 1 1 1 IS1 transposase DUF150 PF02576.17 GAJ46402.1 - 9.1e-11 42.0 0.4 1.6e-10 41.2 0.4 1.4 1 0 0 1 1 1 1 RimP N-terminal domain DUF150_C PF17384.2 GAJ46402.1 - 0.0032 17.6 0.0 0.0091 16.1 0.0 1.8 2 0 0 2 2 2 1 RimP C-terminal SH3 domain KH_5 PF13184.6 GAJ46403.1 - 1.1e-21 76.7 0.6 2.2e-19 69.3 0.1 2.6 2 0 0 2 2 2 2 NusA-like KH domain NusA_N PF08529.11 GAJ46403.1 - 2.1e-15 57.1 0.0 6e-15 55.7 0.0 1.8 1 0 0 1 1 1 1 NusA N-terminal domain KH_2 PF07650.17 GAJ46403.1 - 2.9e-07 30.2 2.1 3.8e-06 26.6 0.1 3.3 3 0 0 3 3 3 1 KH domain S1 PF00575.23 GAJ46403.1 - 2.6e-05 24.4 0.1 0.00012 22.4 0.0 2.2 2 0 0 2 2 2 1 S1 RNA binding domain KH_1 PF00013.29 GAJ46403.1 - 5.3e-05 23.0 0.2 0.0078 16.0 0.1 2.5 2 0 0 2 2 2 1 KH domain HHH_5 PF14520.6 GAJ46403.1 - 0.004 17.7 0.0 0.51 11.0 0.0 2.9 2 0 0 2 2 2 1 Helix-hairpin-helix domain Competence PF03772.16 GAJ46404.1 - 1.1e-47 162.6 26.4 2.4e-47 161.5 26.4 1.5 1 0 0 1 1 1 1 Competence protein DUF4131 PF13567.6 GAJ46404.1 - 0.0055 16.4 0.0 0.0055 16.4 0.0 3.9 4 1 0 4 4 4 2 Domain of unknown function (DUF4131) CPP1-like PF11833.8 GAJ46404.1 - 0.06 13.0 0.1 0.06 13.0 0.1 2.1 3 0 0 3 3 3 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like Lip_A_acyltrans PF03279.13 GAJ46405.1 - 3.5e-47 161.0 0.1 4.3e-47 160.7 0.1 1.0 1 0 0 1 1 1 1 Bacterial lipid A biosynthesis acyltransferase Guanylate_cyc_2 PF09778.9 GAJ46405.1 - 0.03 13.7 0.0 0.045 13.1 0.0 1.2 1 0 0 1 1 1 0 Guanylylate cyclase TIR_2 PF13676.6 GAJ46405.1 - 0.035 14.7 0.0 0.059 14.0 0.0 1.4 1 0 0 1 1 1 0 TIR domain Creatininase PF02633.14 GAJ46405.1 - 0.12 11.8 0.1 0.26 10.7 0.0 1.6 2 0 0 2 2 2 0 Creatinine amidohydrolase NAD_kinase PF01513.21 GAJ46406.1 - 2.3e-07 30.3 0.0 1.5e-06 27.7 0.0 1.9 1 1 0 1 1 1 1 ATP-NAD kinase UDPG_MGDP_dh_N PF03721.14 GAJ46407.1 - 8.8e-30 103.7 0.0 1.4e-29 103.0 0.0 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 GAJ46407.1 - 1.1e-22 80.1 0.0 1.8e-22 79.3 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 GAJ46407.1 - 3.5e-15 56.3 0.0 8.7e-15 55.0 0.0 1.7 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_binding_2 PF03446.15 GAJ46407.1 - 0.0042 17.3 0.0 0.025 14.8 0.0 2.4 3 1 0 3 3 3 1 NAD binding domain of 6-phosphogluconate dehydrogenase MauJ PF17419.2 GAJ46407.1 - 0.055 12.9 0.0 0.082 12.4 0.0 1.2 1 0 0 1 1 1 0 Methylamine utilization protein MauJ ArsR PF09824.9 GAJ46407.1 - 0.073 12.7 0.0 0.15 11.7 0.0 1.5 1 0 0 1 1 1 0 ArsR transcriptional regulator Epimerase PF01370.21 GAJ46408.1 - 2.9e-34 118.6 0.0 3.5e-34 118.3 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 GAJ46408.1 - 6.9e-29 101.3 0.0 8.1e-29 101.1 0.0 1.1 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 GAJ46408.1 - 7.6e-09 35.1 0.0 9.8e-09 34.7 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 GAJ46408.1 - 6.2e-07 28.7 0.0 8.7e-07 28.2 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 GAJ46408.1 - 4.4e-06 26.0 0.0 3.5e-05 23.1 0.0 2.0 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 GAJ46408.1 - 1.9e-05 24.0 0.1 6.9e-05 22.1 0.0 1.9 2 1 0 2 2 2 1 Male sterility protein Autoind_bind PF03472.15 GAJ46408.1 - 0.024 14.1 0.0 0.045 13.2 0.0 1.4 1 0 0 1 1 1 0 Autoinducer binding domain KR PF08659.10 GAJ46408.1 - 0.098 12.6 0.2 0.34 10.8 0.1 2.0 2 1 0 2 2 2 0 KR domain GDP_Man_Dehyd PF16363.5 GAJ46409.1 - 8.5e-05 22.1 0.1 8.9e-05 22.0 0.1 1.0 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 GAJ46409.1 - 0.0007 19.1 0.0 0.0007 19.1 0.0 1.0 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family DUF4096 PF13340.6 GAJ46410.1 - 0.13 12.5 0.0 0.14 12.4 0.0 1.0 1 0 0 1 1 1 0 Putative transposase of IS4/5 family (DUF4096) DUF5049 PF16468.5 GAJ46411.1 - 0.14 12.1 0.3 0.27 11.2 0.3 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF5049) DUF1574 PF07611.11 GAJ46412.1 - 0.067 12.5 0.0 0.072 12.4 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1574) YSIRK_signal PF04650.17 GAJ46412.1 - 0.11 12.4 0.2 0.17 11.8 0.2 1.3 1 0 0 1 1 1 0 YSIRK type signal peptide Transpeptidase PF00905.22 GAJ46413.1 - 2.1e-36 125.7 0.0 2.6e-36 125.4 0.0 1.1 1 0 0 1 1 1 1 Penicillin binding protein transpeptidase domain PBP_dimer PF03717.15 GAJ46413.1 - 1.3e-07 32.2 0.0 3.1e-07 30.9 0.0 1.6 1 1 0 1 1 1 1 Penicillin-binding Protein dimerisation domain MnmE_helical PF12631.7 GAJ46414.1 - 0.028 14.6 2.0 0.028 14.6 2.0 2.4 1 1 0 2 2 2 0 MnmE helical domain NPV_P10 PF05531.12 GAJ46414.1 - 0.043 14.3 1.4 0.15 12.6 1.4 1.9 1 0 0 1 1 1 0 Nucleopolyhedrovirus P10 protein APG6_N PF17675.1 GAJ46414.1 - 0.38 11.3 22.5 0.043 14.3 10.8 2.2 2 0 0 2 2 2 0 Apg6 coiled-coil region Cob_adeno_trans PF01923.18 GAJ46414.1 - 0.46 10.6 4.9 1.6 8.9 1.2 2.3 1 1 2 3 3 3 0 Cobalamin adenosyltransferase PSP1 PF04468.12 GAJ46414.1 - 0.57 10.5 9.3 0.3 11.4 3.0 2.5 2 1 0 2 2 2 0 PSP1 C-terminal conserved region DASH_Duo1 PF08651.10 GAJ46414.1 - 0.64 9.8 11.5 0.76 9.6 1.7 3.0 2 1 1 3 3 3 0 DASH complex subunit Duo1 ABC_tran_CTD PF16326.5 GAJ46414.1 - 1.9 8.8 14.7 0.3 11.4 4.7 3.0 2 2 0 2 2 2 0 ABC transporter C-terminal domain Fra10Ac1 PF09725.9 GAJ46414.1 - 2.7 8.1 12.6 4.8 7.3 7.3 2.8 1 1 1 2 2 2 0 Folate-sensitive fragile site protein Fra10Ac1 Sec20 PF03908.13 GAJ46414.1 - 2.9 7.9 11.2 0.78 9.7 1.9 2.7 2 2 1 3 3 3 0 Sec20 DUF745 PF05335.13 GAJ46414.1 - 2.9 7.6 6.6 1.8 8.2 1.6 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF745) TMPIT PF07851.13 GAJ46414.1 - 4 6.6 16.8 0.51 9.5 6.1 2.0 2 0 0 2 2 2 0 TMPIT-like protein Rx_N PF18052.1 GAJ46414.1 - 4.6 7.6 11.0 17 5.8 2.2 3.5 2 2 1 3 3 3 0 Rx N-terminal domain Exonuc_VII_L PF02601.15 GAJ46414.1 - 6.7 6.2 14.0 13 5.3 14.0 1.5 1 1 0 1 1 1 0 Exonuclease VII, large subunit DUF5320 PF17253.2 GAJ46414.1 - 10 7.3 18.4 0.79 10.8 0.3 3.7 2 2 1 3 3 3 0 Family of unknown function (DUF5320) RBFA PF02033.18 GAJ46415.1 - 1e-14 54.8 1.0 1.2e-14 54.6 1.0 1.0 1 0 0 1 1 1 1 Ribosome-binding factor A SCP2 PF02036.17 GAJ46415.1 - 0.017 15.6 0.0 0.021 15.3 0.0 1.1 1 0 0 1 1 1 0 SCP-2 sterol transfer family MFS_1 PF07690.16 GAJ46417.1 - 3e-23 82.3 28.5 3.8e-23 82.0 28.5 1.1 1 0 0 1 1 1 1 Major Facilitator Superfamily Prenyltransf PF01255.19 GAJ46418.1 - 8e-73 244.7 0.0 9e-73 244.5 0.0 1.0 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase DNA_pol3_delta2 PF13177.6 GAJ46419.1 - 1.5e-34 119.1 0.0 2.3e-34 118.6 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase III, delta subunit DNA_pol3_gamma3 PF12169.8 GAJ46419.1 - 5.8e-23 81.4 0.2 1.2e-22 80.3 0.2 1.6 1 0 0 1 1 1 1 DNA polymerase III subunits gamma and tau domain III AAA PF00004.29 GAJ46419.1 - 5e-12 46.4 0.0 1.4e-11 44.9 0.0 1.8 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 GAJ46419.1 - 1.3e-07 32.0 0.1 5.2e-07 30.0 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.14 GAJ46419.1 - 1e-06 28.8 0.2 0.036 14.1 0.0 2.3 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) RuvB_N PF05496.12 GAJ46419.1 - 2.7e-06 27.2 0.0 0.00039 20.2 0.0 2.4 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 GAJ46419.1 - 3.5e-06 27.5 1.4 3e-05 24.4 0.1 2.9 3 1 0 3 3 2 1 AAA ATPase domain AAA_14 PF13173.6 GAJ46419.1 - 0.00017 21.6 0.2 0.002 18.2 0.2 2.3 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.6 GAJ46419.1 - 0.0003 20.6 0.0 0.0008 19.2 0.0 1.7 1 0 0 1 1 1 1 AAA domain TIP49 PF06068.13 GAJ46419.1 - 0.00051 19.4 0.1 0.7 9.0 0.0 2.2 2 0 0 2 2 2 2 TIP49 P-loop domain NACHT PF05729.12 GAJ46419.1 - 0.00076 19.4 0.1 0.0014 18.5 0.1 1.6 1 1 0 1 1 1 1 NACHT domain AAA_19 PF13245.6 GAJ46419.1 - 0.00094 19.5 0.0 0.0018 18.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 GAJ46419.1 - 0.0025 17.5 0.0 0.0068 16.1 0.0 1.7 1 1 0 1 1 1 1 AAA domain DNA_pol3_delta PF06144.13 GAJ46419.1 - 0.0027 17.5 0.0 0.0055 16.5 0.0 1.5 1 0 0 1 1 1 1 DNA polymerase III, delta subunit AAA_18 PF13238.6 GAJ46419.1 - 0.0034 17.9 0.0 0.0081 16.7 0.0 1.8 1 0 0 1 1 1 1 AAA domain Sigma54_activat PF00158.26 GAJ46419.1 - 0.01 15.5 0.0 0.034 13.9 0.0 1.8 1 1 0 1 1 1 0 Sigma-54 interaction domain TsaE PF02367.17 GAJ46419.1 - 0.011 15.7 0.0 0.022 14.8 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_assoc_2 PF16193.5 GAJ46419.1 - 0.013 15.8 0.0 0.036 14.4 0.0 1.8 1 0 0 1 1 1 0 AAA C-terminal domain NTPase_1 PF03266.15 GAJ46419.1 - 0.021 14.8 0.3 0.08 12.8 0.4 1.8 2 0 0 2 2 2 0 NTPase TniB PF05621.11 GAJ46419.1 - 0.021 14.2 0.0 0.15 11.4 0.0 2.3 2 1 0 2 2 2 0 Bacterial TniB protein ResIII PF04851.15 GAJ46419.1 - 0.024 14.7 0.1 0.82 9.7 0.0 2.3 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit Sigma54_activ_2 PF14532.6 GAJ46419.1 - 0.041 14.0 0.0 1.4 9.0 0.0 2.5 1 1 0 1 1 1 0 Sigma-54 interaction domain RNA_helicase PF00910.22 GAJ46419.1 - 0.057 13.8 0.0 0.15 12.5 0.0 1.7 1 0 0 1 1 1 0 RNA helicase T2SSE PF00437.20 GAJ46419.1 - 0.07 12.2 0.0 0.14 11.2 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_28 PF13521.6 GAJ46419.1 - 0.11 12.8 0.3 0.24 11.7 0.3 1.6 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 GAJ46419.1 - 0.11 11.7 0.0 0.22 10.7 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain DUF3646 PF12362.8 GAJ46420.1 - 5.5e-09 36.3 0.4 6.8e-09 36.1 0.4 1.0 1 0 0 1 1 1 1 DNA polymerase III gamma and tau subunits C terminal K-box PF01486.17 GAJ46421.1 - 0.036 14.2 2.1 0.038 14.2 0.7 1.8 2 1 0 2 2 2 0 K-box region DUF1104 PF06518.11 GAJ46421.1 - 3.4 8.1 6.7 1.2 9.6 0.4 2.6 2 1 1 3 3 3 0 Protein of unknown function (DUF1104) DegT_DnrJ_EryC1 PF01041.17 GAJ46422.1 - 2.4e-109 365.9 0.0 2.8e-109 365.7 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.21 GAJ46422.1 - 2.7e-10 40.0 0.0 3.9e-10 39.4 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 GAJ46422.1 - 0.00093 18.6 0.0 0.0046 16.3 0.0 1.8 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 GAJ46422.1 - 0.0016 17.5 0.0 0.0025 16.8 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V OKR_DC_1 PF01276.20 GAJ46422.1 - 0.14 10.9 0.0 0.2 10.4 0.0 1.2 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain NFRKB_winged PF14465.6 GAJ46423.1 - 0.19 11.9 2.6 0.26 11.5 0.4 2.3 3 0 0 3 3 3 0 NFRKB Winged Helix-like TSC22 PF01166.18 GAJ46423.1 - 0.24 11.8 2.9 1.2 9.5 0.2 3.6 2 2 2 4 4 4 0 TSC-22/dip/bun family RILP PF11461.8 GAJ46423.1 - 0.25 11.6 6.6 0.21 11.9 0.8 2.9 2 0 0 2 2 2 0 Rab interacting lysosomal protein MMtag PF10159.9 GAJ46423.1 - 3.4 8.0 6.2 0.92 9.8 1.7 2.4 2 0 0 2 2 2 0 Multiple myeloma tumor-associated DNA_ligase_aden PF01653.18 GAJ46424.1 - 1.8e-103 346.0 0.1 2.4e-103 345.6 0.1 1.2 1 0 0 1 1 1 1 NAD-dependent DNA ligase adenylation domain DNA_ligase_OB PF03120.16 GAJ46424.1 - 3.3e-31 107.0 0.6 6.9e-31 106.0 0.6 1.5 1 0 0 1 1 1 1 NAD-dependent DNA ligase OB-fold domain HHH_2 PF12826.7 GAJ46424.1 - 1.9e-11 43.9 0.1 3.3e-10 39.9 0.0 2.5 2 0 0 2 2 2 1 Helix-hairpin-helix motif BRCT PF00533.26 GAJ46424.1 - 2e-11 44.1 0.0 4.2e-11 43.1 0.0 1.6 1 0 0 1 1 1 1 BRCA1 C Terminus (BRCT) domain DNA_ligase_ZBD PF03119.16 GAJ46424.1 - 2.2e-07 30.8 1.7 4e-07 29.9 1.7 1.5 1 0 0 1 1 1 1 NAD-dependent DNA ligase C4 zinc finger domain HHH_5 PF14520.6 GAJ46424.1 - 3.7e-07 30.6 0.0 0.0029 18.2 0.0 2.6 2 0 0 2 2 2 2 Helix-hairpin-helix domain PTCB-BRCT PF12738.7 GAJ46424.1 - 3.6e-05 23.6 0.1 9.2e-05 22.3 0.1 1.7 1 0 0 1 1 1 1 twin BRCT domain RNA_ligase PF09414.10 GAJ46424.1 - 0.0081 16.5 0.9 0.027 14.8 0.0 2.2 2 0 0 2 2 2 1 RNA ligase Trigger_N PF05697.13 GAJ46425.1 - 2.1e-10 41.1 0.4 7.8e-10 39.2 0.1 2.1 2 0 0 2 2 2 1 Bacterial trigger factor protein (TF) CLP_protease PF00574.23 GAJ46426.1 - 4e-80 268.0 0.0 4.6e-80 267.8 0.0 1.0 1 0 0 1 1 1 1 Clp protease DUF5429 PF17494.2 GAJ46426.1 - 0.1 12.6 0.1 0.16 12.0 0.1 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5429) AAA_2 PF07724.14 GAJ46427.1 - 1.1e-47 162.3 0.1 1.6e-47 161.8 0.1 1.3 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) zf-C4_ClpX PF06689.13 GAJ46427.1 - 8.2e-20 70.4 4.4 2.2e-19 69.0 4.4 1.8 1 0 0 1 1 1 1 ClpX C4-type zinc finger AAA PF00004.29 GAJ46427.1 - 8.7e-18 65.0 0.1 3.1e-17 63.2 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) ClpB_D2-small PF10431.9 GAJ46427.1 - 3e-12 46.4 0.4 3e-12 46.4 0.4 2.0 2 0 0 2 2 2 1 C-terminal, D2-small domain, of ClpB protein MCM PF00493.23 GAJ46427.1 - 3.7e-06 26.2 0.1 6.1e-06 25.5 0.1 1.2 1 0 0 1 1 1 1 MCM P-loop domain AAA_5 PF07728.14 GAJ46427.1 - 1.2e-05 25.3 0.1 0.00017 21.6 0.1 2.3 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 GAJ46427.1 - 4e-05 23.9 0.2 0.00016 22.0 0.2 2.0 1 1 0 1 1 1 1 AAA domain Mg_chelatase PF01078.21 GAJ46427.1 - 4.4e-05 23.0 0.1 0.0083 15.5 0.1 3.0 2 1 0 3 3 3 1 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 GAJ46427.1 - 4.4e-05 23.2 0.1 0.00075 19.2 0.1 2.4 1 1 0 1 1 1 1 Sigma-54 interaction domain RuvB_N PF05496.12 GAJ46427.1 - 7.3e-05 22.6 0.3 0.0003 20.6 0.3 2.0 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_7 PF12775.7 GAJ46427.1 - 0.00026 20.5 0.0 0.00056 19.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_14 PF13173.6 GAJ46427.1 - 0.00063 19.8 0.0 0.0021 18.1 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 GAJ46427.1 - 0.0033 17.6 0.0 0.0058 16.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain TIP49 PF06068.13 GAJ46427.1 - 0.0044 16.3 0.2 0.019 14.2 0.0 1.8 1 1 1 2 2 2 1 TIP49 P-loop domain Sigma54_activ_2 PF14532.6 GAJ46427.1 - 0.01 16.0 0.0 0.033 14.3 0.0 1.8 1 1 0 1 1 1 0 Sigma-54 interaction domain IstB_IS21 PF01695.17 GAJ46427.1 - 0.012 15.4 0.0 0.023 14.4 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_16 PF13191.6 GAJ46427.1 - 0.023 15.1 0.2 0.074 13.4 0.1 1.9 2 1 0 2 2 2 0 AAA ATPase domain Zeta_toxin PF06414.12 GAJ46427.1 - 0.03 13.6 0.1 0.061 12.6 0.1 1.5 1 1 0 1 1 1 0 Zeta toxin ABC_tran PF00005.27 GAJ46427.1 - 0.038 14.5 0.1 0.097 13.2 0.0 1.8 2 0 0 2 2 1 0 ABC transporter NACHT PF05729.12 GAJ46427.1 - 0.045 13.7 0.1 0.32 10.9 0.0 2.2 2 0 0 2 2 2 0 NACHT domain RNA_helicase PF00910.22 GAJ46427.1 - 0.046 14.1 0.1 0.13 12.6 0.1 1.9 1 1 0 1 1 1 0 RNA helicase SKI PF01202.22 GAJ46427.1 - 0.052 13.7 0.0 0.12 12.5 0.0 1.7 1 0 0 1 1 1 0 Shikimate kinase ATPase PF06745.13 GAJ46427.1 - 0.064 12.6 1.6 0.88 8.9 0.1 2.3 1 1 0 2 2 2 0 KaiC AAA_24 PF13479.6 GAJ46427.1 - 0.067 12.9 0.1 0.11 12.2 0.1 1.3 1 0 0 1 1 1 0 AAA domain T2SSE PF00437.20 GAJ46427.1 - 0.079 12.0 0.0 0.12 11.4 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein TsaE PF02367.17 GAJ46427.1 - 0.099 12.6 0.0 0.2 11.7 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_28 PF13521.6 GAJ46427.1 - 0.11 12.8 0.0 0.2 11.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain IPT PF01745.16 GAJ46427.1 - 0.13 11.6 0.1 0.34 10.3 0.1 1.6 1 0 0 1 1 1 0 Isopentenyl transferase AAA_18 PF13238.6 GAJ46427.1 - 0.13 12.8 0.1 0.5 10.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_3 PF07726.11 GAJ46427.1 - 0.15 11.9 0.0 0.48 10.3 0.0 1.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) SBP_bac_5 PF00496.22 GAJ46428.1 - 3.9e-46 157.7 0.0 5.5e-46 157.2 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Ribosomal_L33 PF00471.20 GAJ46429.1 - 6e-11 42.6 1.4 7.6e-11 42.3 1.4 1.1 1 0 0 1 1 1 1 Ribosomal protein L33 Rotamase PF00639.21 GAJ46431.1 - 8e-09 36.3 0.0 2.1e-08 35.0 0.0 1.6 2 0 0 2 2 2 1 PPIC-type PPIASE domain Rotamase_3 PF13616.6 GAJ46431.1 - 4.2e-06 27.3 0.0 1.3e-05 25.8 0.0 1.7 2 0 0 2 2 2 1 PPIC-type PPIASE domain DUF4519 PF15012.6 GAJ46432.1 - 0.38 11.0 3.0 0.78 10.0 3.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4519) DDE_3 PF13358.6 GAJ46433.1 - 0.026 14.3 0.0 0.031 14.0 0.0 1.1 1 0 0 1 1 1 0 DDE superfamily endonuclease Ribosomal_S21 PF01165.20 GAJ46434.1 - 6.9e-13 48.1 7.8 6.9e-13 48.1 7.8 1.6 1 1 1 2 2 2 1 Ribosomal protein S21 YgaB PF14182.6 GAJ46435.1 - 0.11 12.9 0.2 0.42 11.0 0.1 2.0 2 0 0 2 2 2 0 YgaB-like protein Peptidase_M24 PF00557.24 GAJ46436.1 - 9.4e-50 169.2 0.0 1.1e-49 169.0 0.0 1.0 1 0 0 1 1 1 1 Metallopeptidase family M24 DDE_Tnp_1 PF01609.21 GAJ46438.1 - 1.1e-10 41.6 0.0 1.5e-10 41.1 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain OST3_OST6 PF04756.13 GAJ46438.1 - 0.0026 17.2 0.2 0.0029 17.0 0.2 1.0 1 0 0 1 1 1 1 OST3 / OST6 family, transporter family DDE_Tnp_1_6 PF13751.6 GAJ46438.1 - 0.18 12.1 0.0 0.23 11.7 0.0 1.1 1 0 0 1 1 1 0 Transposase DDE domain DrsE_2 PF13686.6 GAJ46439.1 - 0.037 13.9 0.1 0.054 13.4 0.1 1.2 1 0 0 1 1 1 0 DsrE/DsrF/DrsH-like family Trp_repressor PF01371.19 GAJ46442.1 - 1.6e-21 76.2 0.0 1.8e-21 76.1 0.0 1.0 1 0 0 1 1 1 1 Trp repressor protein HTH_23 PF13384.6 GAJ46442.1 - 0.0011 18.7 0.0 0.0017 18.1 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain HTH_38 PF13936.6 GAJ46442.1 - 0.0049 16.6 0.1 0.0077 16.0 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain ABC_sub_bind PF04392.12 GAJ46443.1 - 1.4e-81 273.9 8.0 1.6e-81 273.7 8.0 1.0 1 0 0 1 1 1 1 ABC transporter substrate binding protein Peripla_BP_4 PF13407.6 GAJ46443.1 - 7.3e-11 42.1 3.0 6.2e-09 35.8 0.6 2.1 2 0 0 2 2 2 2 Periplasmic binding protein domain ANF_receptor PF01094.28 GAJ46443.1 - 6.6e-05 22.2 1.3 0.034 13.3 0.0 2.1 2 0 0 2 2 2 2 Receptor family ligand binding region Aldolase PF01081.19 GAJ46443.1 - 0.0018 17.8 0.5 0.0039 16.6 0.0 1.7 2 0 0 2 2 2 1 KDPG and KHG aldolase GARS_N PF02844.15 GAJ46443.1 - 0.032 15.0 0.8 0.84 10.5 0.1 2.5 2 0 0 2 2 2 0 Phosphoribosylglycinamide synthetase, N domain DUF2099 PF09872.9 GAJ46443.1 - 0.042 13.0 0.3 0.11 11.6 0.2 1.7 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2099) BPD_transp_2 PF02653.16 GAJ46444.1 - 3e-26 92.2 29.5 4.3e-26 91.7 29.5 1.2 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Gly-zipper_Omp PF13488.6 GAJ46444.1 - 2.4 8.2 10.3 1.2 9.2 0.1 2.9 2 1 1 3 3 3 0 Glycine zipper ABC_tran PF00005.27 GAJ46445.1 - 9.4e-31 107.2 0.6 1.4e-30 106.6 0.6 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 GAJ46445.1 - 1.2e-15 58.1 0.8 3e-08 33.8 0.1 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 GAJ46445.1 - 3.7e-12 46.2 4.0 9e-12 44.9 4.0 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 GAJ46445.1 - 5.6e-07 30.3 5.2 3e-06 27.9 5.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 GAJ46445.1 - 7.6e-07 28.8 1.2 9.9e-07 28.4 0.1 1.8 2 0 0 2 2 1 1 P-loop containing region of AAA domain AAA PF00004.29 GAJ46445.1 - 2e-06 28.2 1.1 0.029 14.8 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) ABC_ATPase PF09818.9 GAJ46445.1 - 2.3e-05 23.4 0.1 0.08 11.7 0.0 2.1 2 0 0 2 2 2 2 Predicted ATPase of the ABC class RsgA_GTPase PF03193.16 GAJ46445.1 - 2.4e-05 24.3 0.3 5.1e-05 23.2 0.1 1.6 2 0 0 2 2 2 1 RsgA GTPase AAA_27 PF13514.6 GAJ46445.1 - 0.00013 21.7 0.0 0.00027 20.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 GAJ46445.1 - 0.00027 20.7 1.2 0.083 12.6 0.0 2.1 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_5 PF07728.14 GAJ46445.1 - 0.00052 20.0 0.1 0.26 11.3 0.0 2.4 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_15 PF13175.6 GAJ46445.1 - 0.0012 18.7 5.5 0.013 15.2 0.5 2.3 1 1 1 2 2 2 1 AAA ATPase domain AAA_16 PF13191.6 GAJ46445.1 - 0.002 18.5 0.1 0.0036 17.7 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain MMR_HSR1 PF01926.23 GAJ46445.1 - 0.0032 17.5 0.1 0.0081 16.2 0.0 1.7 2 0 0 2 2 2 1 50S ribosome-binding GTPase AAA_22 PF13401.6 GAJ46445.1 - 0.0054 17.0 0.6 0.019 15.2 0.6 1.8 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.6 GAJ46445.1 - 0.023 14.9 0.4 0.33 11.2 0.4 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit NACHT PF05729.12 GAJ46445.1 - 0.031 14.2 0.6 1.6 8.6 0.0 2.2 2 0 0 2 2 2 0 NACHT domain NTPase_1 PF03266.15 GAJ46445.1 - 0.047 13.6 0.2 3.3 7.6 0.0 2.4 2 0 0 2 2 2 0 NTPase AAA_25 PF13481.6 GAJ46445.1 - 0.05 13.2 0.0 0.14 11.7 0.0 1.7 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.12 GAJ46445.1 - 0.098 11.9 0.0 0.14 11.4 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_30 PF13604.6 GAJ46445.1 - 0.14 11.9 0.2 0.43 10.3 0.2 1.9 1 1 0 1 1 1 0 AAA domain tRNA-synt_His PF13393.6 GAJ46446.1 - 3.6e-34 118.4 0.0 4.3e-34 118.2 0.0 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase HGTP_anticodon PF03129.20 GAJ46446.1 - 1.9e-10 40.8 0.3 1.9e-10 40.8 0.3 2.0 2 0 0 2 2 2 1 Anticodon binding domain tRNA-synt_2b PF00587.25 GAJ46446.1 - 2.7e-06 27.5 0.0 9.3e-06 25.7 0.0 1.9 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_2 PF00152.20 GAJ46446.1 - 0.0038 16.4 0.1 0.023 13.8 0.0 2.2 2 1 0 2 2 2 1 tRNA synthetases class II (D, K and N) Pribosyltran_N PF13793.6 GAJ46447.1 - 3.5e-38 130.1 0.2 5.1e-35 119.9 0.0 2.2 2 0 0 2 2 2 2 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyl_synth PF14572.6 GAJ46447.1 - 9e-18 65.0 1.6 2.3e-17 63.6 1.0 1.9 1 1 1 2 2 2 1 Phosphoribosyl synthetase-associated domain Pribosyltran PF00156.27 GAJ46447.1 - 1.1e-16 60.7 0.0 6.1e-16 58.3 0.0 2.1 3 0 0 3 3 3 1 Phosphoribosyl transferase domain UPRTase PF14681.6 GAJ46447.1 - 8.8e-07 28.6 0.5 7.5e-06 25.5 0.3 2.0 2 0 0 2 2 2 1 Uracil phosphoribosyltransferase DUF4392 PF14336.6 GAJ46447.1 - 0.048 13.1 0.0 0.059 12.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4392) PRTase_2 PF15609.6 GAJ46447.1 - 0.073 12.6 0.1 0.11 12.0 0.1 1.4 1 0 0 1 1 1 0 Phosphoribosyl transferase zinc_ribbon_4 PF13717.6 GAJ46448.1 - 4.7e-11 42.4 0.2 7.6e-11 41.7 0.2 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_5 PF13719.6 GAJ46448.1 - 1.9e-07 30.7 0.1 3.3e-07 29.9 0.1 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zf-LSD1 PF06943.12 GAJ46448.1 - 3 7.8 6.0 0.68 9.8 0.8 2.3 2 0 0 2 2 2 0 LSD1 zinc finger Arb2 PF09757.9 GAJ46449.1 - 0.09 11.9 0.1 0.092 11.8 0.1 1.0 1 0 0 1 1 1 0 Arb2 domain LpxB PF02684.15 GAJ46450.1 - 1.5e-85 287.4 0.0 1.8e-85 287.1 0.0 1.0 1 0 0 1 1 1 1 Lipid-A-disaccharide synthetase DUF354 PF04007.12 GAJ46450.1 - 0.025 13.6 0.0 0.042 12.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF354) PNTB_4TM PF12769.7 GAJ46451.1 - 4.7e-17 62.2 4.0 4.7e-17 62.2 4.0 1.6 2 0 0 2 2 2 1 4TM region of pyridine nucleotide transhydrogenase, mitoch DUF1077 PF06417.12 GAJ46451.1 - 0.63 10.1 4.6 5.3 7.1 1.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1077) AlaDh_PNT_C PF01262.21 GAJ46452.1 - 3.9e-45 153.8 0.0 5.6e-45 153.3 0.0 1.2 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain AlaDh_PNT_N PF05222.15 GAJ46452.1 - 3.1e-16 59.9 0.0 4.8e-16 59.3 0.0 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, N-terminal domain 2-Hacid_dh_C PF02826.19 GAJ46452.1 - 0.034 13.5 0.1 0.26 10.6 0.1 2.0 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XdhC_C PF13478.6 GAJ46452.1 - 0.041 14.4 0.0 0.58 10.7 0.0 2.2 2 0 0 2 2 2 0 XdhC Rossmann domain ADH_zinc_N PF00107.26 GAJ46452.1 - 0.24 11.4 1.0 2.4 8.1 0.2 2.6 3 1 0 3 3 3 0 Zinc-binding dehydrogenase Terminase_5 PF06056.12 GAJ46453.1 - 0.038 13.9 0.0 0.059 13.3 0.0 1.4 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) HTH_28 PF13518.6 GAJ46453.1 - 0.057 13.5 0.0 0.082 13.1 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_psq PF05225.16 GAJ46453.1 - 0.11 12.2 0.0 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 helix-turn-helix, Psq domain HTH_23 PF13384.6 GAJ46453.1 - 0.13 12.1 0.0 0.19 11.6 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain DDE_Tnp_IS1 PF03400.13 GAJ46454.1 - 9.9e-05 22.7 0.0 0.00012 22.4 0.0 1.1 1 0 0 1 1 1 1 IS1 transposase SecB PF02556.14 GAJ46458.1 - 1.4e-20 73.6 0.0 1.8e-20 73.3 0.0 1.0 1 0 0 1 1 1 1 Preprotein translocase subunit SecB Acetyltransf_5 PF13444.6 GAJ46459.1 - 4.2e-29 101.2 0.2 6.6e-29 100.6 0.2 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Autoind_synth PF00765.17 GAJ46459.1 - 0.00048 19.7 0.0 0.00067 19.2 0.0 1.1 1 0 0 1 1 1 1 Autoinducer synthase Acetyltransf_10 PF13673.7 GAJ46459.1 - 0.066 13.2 0.0 0.18 11.7 0.0 1.6 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acyltransferase PF01553.21 GAJ46460.1 - 2.1e-17 63.0 0.2 4.3e-17 62.0 0.1 1.5 2 0 0 2 2 2 1 Acyltransferase Radical_SAM PF04055.21 GAJ46461.1 - 1.4e-29 103.6 0.1 8.6e-29 101.1 0.1 2.1 2 0 0 2 2 2 1 Radical SAM superfamily UPF0004 PF00919.20 GAJ46461.1 - 4.2e-26 90.9 0.1 7.9e-26 90.0 0.1 1.5 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM PF01938.20 GAJ46461.1 - 4.4e-05 23.4 0.0 0.00012 22.0 0.0 1.8 2 0 0 2 2 2 1 TRAM domain RMMBL PF07521.12 GAJ46462.1 - 1.7e-12 47.1 0.3 2.1e-08 33.9 0.0 2.7 2 0 0 2 2 2 2 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B_2 PF12706.7 GAJ46462.1 - 1.5e-11 44.2 0.1 2.9e-11 43.3 0.1 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 GAJ46462.1 - 1.2e-10 41.7 0.2 2.3e-10 40.8 0.2 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_6 PF16661.5 GAJ46462.1 - 0.00051 19.5 0.1 0.0019 17.7 0.1 1.9 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily domain RNase_J_C PF17770.1 GAJ46462.1 - 0.017 16.1 0.1 0.035 15.2 0.1 1.5 1 0 0 1 1 1 0 Ribonuclease J C-terminal domain Lactamase_B_3 PF13483.6 GAJ46462.1 - 0.019 14.9 0.0 0.27 11.1 0.0 2.2 2 0 0 2 2 2 0 Beta-lactamase superfamily domain Response_reg PF00072.24 GAJ46463.1 - 1.5e-24 86.3 0.0 2.3e-24 85.7 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 GAJ46463.1 - 9.7e-18 64.0 0.0 2.4e-17 62.8 0.0 1.7 2 0 0 2 2 2 1 Transcriptional regulatory protein, C terminal DUF3501 PF12007.8 GAJ46464.1 - 1.6e-31 109.8 0.0 2.2e-31 109.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3501) PNTB PF02233.16 GAJ46465.1 - 4.8e-140 467.5 9.1 6e-140 467.2 9.1 1.0 1 0 0 1 1 1 1 NAD(P) transhydrogenase beta subunit TPP_enzyme_M PF00205.22 GAJ46465.1 - 4.8e-07 29.6 0.4 4.3e-06 26.5 0.3 2.4 1 1 1 2 2 2 1 Thiamine pyrophosphate enzyme, central domain TrkH PF02386.16 GAJ46466.1 - 7e-16 57.8 20.9 2.5e-14 52.6 7.9 2.8 1 1 1 2 2 2 2 Cation transport protein PgaD PF13994.6 GAJ46466.1 - 0.0093 16.0 0.4 0.0093 16.0 0.4 2.8 4 0 0 4 4 4 1 PgaD-like protein HTH_23 PF13384.6 GAJ46468.1 - 1.5e-05 24.7 0.0 2e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain HTH_38 PF13936.6 GAJ46468.1 - 0.00086 19.0 0.0 0.0011 18.6 0.0 1.3 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_28 PF13518.6 GAJ46468.1 - 0.0061 16.6 0.0 0.0083 16.2 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_psq PF05225.16 GAJ46468.1 - 0.0081 15.9 0.0 0.015 15.0 0.0 1.5 2 0 0 2 2 2 1 helix-turn-helix, Psq domain Sigma70_r4_2 PF08281.12 GAJ46468.1 - 0.0089 15.7 0.0 0.016 14.8 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_7 PF02796.15 GAJ46468.1 - 0.011 15.7 0.0 0.014 15.4 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase Terminase_5 PF06056.12 GAJ46468.1 - 0.014 15.3 0.0 0.025 14.5 0.0 1.4 2 0 0 2 2 2 0 Putative ATPase subunit of terminase (gpP-like) GerE PF00196.19 GAJ46468.1 - 0.023 14.2 0.0 0.043 13.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_Tnp_4 PF13613.6 GAJ46468.1 - 0.089 12.5 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease HTH_29 PF13551.6 GAJ46468.1 - 0.099 12.7 0.0 0.14 12.2 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix HTH_Tnp_ISL3 PF13542.6 GAJ46468.1 - 0.15 11.5 0.0 0.22 11.0 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 KaiA PF07688.12 GAJ46469.1 - 0.0047 17.1 0.1 0.0087 16.2 0.1 1.4 1 0 0 1 1 1 1 KaiA C-terminal domain EloA-BP1 PF15870.5 GAJ46469.1 - 0.074 13.3 2.1 0.12 12.6 2.1 1.3 1 0 0 1 1 1 0 ElonginA binding-protein 1 Sua5_yciO_yrdC PF01300.18 GAJ46470.1 - 6.7e-45 152.8 0.0 8.7e-45 152.4 0.0 1.2 1 0 0 1 1 1 1 Telomere recombination SUA5 PF03481.13 GAJ46470.1 - 6e-15 56.0 0.0 2.5e-14 54.0 0.0 1.9 1 1 0 1 1 1 1 Putative GTP-binding controlling metal-binding GreA_GreB_N PF03449.15 GAJ46471.1 - 1.7e-26 92.2 4.5 2.8e-26 91.5 4.5 1.4 1 0 0 1 1 1 1 Transcription elongation factor, N-terminal GreA_GreB PF01272.19 GAJ46471.1 - 8e-22 76.9 0.3 1.1e-21 76.4 0.3 1.2 1 0 0 1 1 1 1 Transcription elongation factor, GreA/GreB, C-term RuvX PF03652.15 GAJ46472.1 - 5.9e-27 94.7 0.0 7.1e-27 94.4 0.0 1.1 1 0 0 1 1 1 1 Holliday junction resolvase DUF2497 PF10691.9 GAJ46474.1 - 0.0012 19.3 3.2 0.21 12.0 0.1 3.0 3 1 0 3 3 3 2 Protein of unknown function (DUF2497) OEP PF02321.18 GAJ46475.1 - 5.6e-32 111.1 6.9 6.3e-16 58.7 0.2 2.2 2 0 0 2 2 2 2 Outer membrane efflux protein LRR_3 PF07725.12 GAJ46475.1 - 0.13 12.1 0.1 0.32 10.9 0.1 1.7 1 0 0 1 1 1 0 Leucine Rich Repeat ABC_tran PF00005.27 GAJ46478.1 - 3.3e-29 102.2 0.0 5.5e-29 101.4 0.0 1.4 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 GAJ46478.1 - 5.3e-09 35.8 0.8 1.9e-05 24.2 0.0 2.3 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain ABC_membrane PF00664.23 GAJ46478.1 - 6.5e-06 26.0 15.7 1.1e-05 25.3 15.7 1.3 1 0 0 1 1 1 1 ABC transporter transmembrane region AAA_29 PF13555.6 GAJ46478.1 - 2.1e-05 24.2 0.4 4.7e-05 23.0 0.4 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_ATPase PF09818.9 GAJ46478.1 - 0.00054 18.9 3.6 0.0053 15.6 0.0 2.2 2 0 0 2 2 2 1 Predicted ATPase of the ABC class AAA_21 PF13304.6 GAJ46478.1 - 0.0013 18.6 1.7 0.0097 15.7 0.3 2.3 1 1 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system T2SSE PF00437.20 GAJ46478.1 - 0.0021 17.2 0.0 0.0032 16.6 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein DEAD PF00270.29 GAJ46478.1 - 0.0059 16.4 0.2 0.025 14.4 0.1 2.1 1 1 1 2 2 2 1 DEAD/DEAH box helicase DUF87 PF01935.17 GAJ46478.1 - 0.013 15.6 0.4 0.033 14.3 0.4 1.6 1 0 0 1 1 1 0 Helicase HerA, central domain RsgA_GTPase PF03193.16 GAJ46478.1 - 0.02 14.8 0.0 0.044 13.7 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase SbcCD_C PF13558.6 GAJ46478.1 - 0.028 14.7 0.3 0.12 12.7 0.3 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit RNA_helicase PF00910.22 GAJ46478.1 - 0.031 14.6 0.0 3.2 8.2 0.0 2.5 2 0 0 2 2 2 0 RNA helicase AAA_22 PF13401.6 GAJ46478.1 - 0.045 14.0 0.8 0.57 10.5 0.8 2.2 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.6 GAJ46478.1 - 0.049 14.1 3.7 0.11 13.0 3.4 1.8 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 GAJ46478.1 - 0.061 13.7 0.0 0.12 12.8 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.6 GAJ46478.1 - 0.095 12.4 0.2 0.47 10.1 0.2 1.9 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 GAJ46478.1 - 0.12 12.5 0.0 0.33 11.1 0.0 1.8 1 0 0 1 1 1 0 50S ribosome-binding GTPase FtsK_SpoIIIE PF01580.18 GAJ46478.1 - 0.13 11.6 0.0 0.25 10.7 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family NTPase_1 PF03266.15 GAJ46478.1 - 0.13 12.1 3.2 4.4 7.2 0.1 2.3 2 0 0 2 2 2 0 NTPase Epimerase_2 PF02350.19 GAJ46480.1 - 1.4e-94 316.8 0.0 1.6e-94 316.6 0.0 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase DUF2584 PF10763.9 GAJ46480.1 - 0.15 12.3 0.4 0.6 10.3 0.3 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2584) BLM_N PF16202.5 GAJ46481.1 - 0.041 13.0 0.2 0.048 12.8 0.2 1.0 1 0 0 1 1 1 0 N-terminal region of Bloom syndrome protein Methyltransf_11 PF08241.12 GAJ46483.1 - 8.5e-25 87.2 0.0 1.6e-24 86.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 GAJ46483.1 - 7.5e-23 81.1 0.0 1.5e-22 80.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 GAJ46483.1 - 3.3e-17 62.8 0.1 6.1e-17 61.9 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 GAJ46483.1 - 5.3e-17 62.0 0.0 7.6e-17 61.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 GAJ46483.1 - 5.6e-17 62.3 0.0 1.3e-16 61.2 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 GAJ46483.1 - 1.5e-09 37.5 0.0 2.2e-09 37.0 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.14 GAJ46483.1 - 2.8e-06 27.0 0.0 4.3e-06 26.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.20 GAJ46483.1 - 2.8e-06 26.8 0.0 4.1e-06 26.3 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase TehB PF03848.14 GAJ46483.1 - 5.1e-05 22.8 0.0 7.4e-05 22.2 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_9 PF08003.11 GAJ46483.1 - 0.00082 18.4 0.0 0.0012 17.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) NodS PF05401.11 GAJ46483.1 - 0.001 18.7 0.0 0.002 17.8 0.0 1.4 1 0 0 1 1 1 1 Nodulation protein S (NodS) MetW PF07021.12 GAJ46483.1 - 0.0011 18.6 0.0 0.0019 17.8 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_8 PF05148.15 GAJ46483.1 - 0.0013 18.6 0.0 0.0036 17.2 0.0 1.7 1 1 0 1 1 1 1 Hypothetical methyltransferase Pox_MCEL PF03291.16 GAJ46483.1 - 0.0031 16.7 0.0 0.0042 16.3 0.0 1.2 1 0 0 1 1 1 1 mRNA capping enzyme PrmA PF06325.13 GAJ46483.1 - 0.0056 16.1 0.0 0.0075 15.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_4 PF02390.17 GAJ46483.1 - 0.019 14.4 0.0 0.036 13.5 0.0 1.4 1 0 0 1 1 1 0 Putative methyltransferase Asn_synthase PF00733.21 GAJ46484.1 - 7.9e-90 302.1 0.0 1e-89 301.7 0.0 1.1 1 0 0 1 1 1 1 Asparagine synthase GATase_7 PF13537.6 GAJ46484.1 - 1.1e-40 138.3 0.0 1.9e-40 137.6 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 GAJ46484.1 - 3.1e-34 118.0 0.0 5e-34 117.4 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain NAD_synthase PF02540.17 GAJ46484.1 - 0.00063 18.9 0.0 0.0015 17.7 0.0 1.6 1 0 0 1 1 1 1 NAD synthase QueC PF06508.13 GAJ46484.1 - 0.0036 16.8 0.0 0.0063 16.0 0.0 1.3 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC DUF3700 PF12481.8 GAJ46484.1 - 0.086 12.3 0.0 0.2 11.1 0.0 1.5 1 0 0 1 1 1 0 Aluminium induced protein Glyco_transf_4 PF13439.6 GAJ46485.1 - 6e-09 36.1 0.0 1.1e-08 35.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.20 GAJ46485.1 - 4.5e-07 29.6 0.0 8.5e-07 28.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 GAJ46485.1 - 5e-06 27.0 0.0 7.9e-06 26.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain AMNp_N PF10423.9 GAJ46486.1 - 1.1e-21 77.1 0.0 2.3e-21 76.1 0.0 1.5 1 0 0 1 1 1 1 Bacterial AMP nucleoside phosphorylase N-terminus PNP_UDP_1 PF01048.20 GAJ46486.1 - 1.9e-13 50.2 0.0 2.9e-13 49.6 0.0 1.2 1 0 0 1 1 1 1 Phosphorylase superfamily DNA_gyraseB PF00204.25 GAJ46487.1 - 4.9e-50 169.4 0.0 8.4e-50 168.6 0.0 1.4 1 0 0 1 1 1 1 DNA gyrase B DNA_gyraseB_C PF00986.21 GAJ46487.1 - 1.7e-26 92.2 0.0 3.8e-26 91.1 0.0 1.6 1 0 0 1 1 1 1 DNA gyrase B subunit, carboxyl terminus HATPase_c PF02518.26 GAJ46487.1 - 2.6e-21 76.2 0.0 4.9e-21 75.3 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Toprim PF01751.22 GAJ46487.1 - 4.6e-16 58.9 0.0 1.1e-15 57.7 0.0 1.7 1 0 0 1 1 1 1 Toprim domain HATPase_c_3 PF13589.6 GAJ46487.1 - 0.005 16.7 0.0 0.011 15.6 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MlaD PF02470.20 GAJ46489.1 - 5.8e-17 61.8 0.0 8.7e-17 61.2 0.0 1.3 1 0 0 1 1 1 1 MlaD protein COX6C PF02937.15 GAJ46489.1 - 0.025 14.7 0.1 0.55 10.4 0.0 2.2 2 0 0 2 2 2 0 Cytochrome c oxidase subunit VIc DNA_pol_A PF00476.20 GAJ46490.1 - 2.9e-124 415.0 0.0 4.5e-124 414.3 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase family A 5_3_exonuc_N PF02739.16 GAJ46490.1 - 1.5e-38 132.2 0.0 2.7e-38 131.4 0.0 1.4 1 0 0 1 1 1 1 5'-3' exonuclease, N-terminal resolvase-like domain 5_3_exonuc PF01367.20 GAJ46490.1 - 2e-20 73.2 0.1 1.1e-19 70.8 0.0 2.4 3 0 0 3 3 3 1 5'-3' exonuclease, C-terminal SAM fold HHH_5 PF14520.6 GAJ46490.1 - 0.057 14.0 0.0 0.16 12.6 0.0 1.8 1 0 0 1 1 1 0 Helix-hairpin-helix domain CPSase_L_D2 PF02786.17 GAJ46491.1 - 1.3e-69 233.9 0.0 1.8e-69 233.5 0.0 1.2 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Biotin_carb_N PF00289.22 GAJ46491.1 - 8.3e-45 151.9 0.2 2.1e-44 150.6 0.2 1.7 2 0 0 2 2 2 1 Biotin carboxylase, N-terminal domain Biotin_carb_C PF02785.19 GAJ46491.1 - 7.6e-37 125.7 0.0 2.9e-36 123.9 0.0 2.0 2 0 0 2 2 2 1 Biotin carboxylase C-terminal domain Dala_Dala_lig_C PF07478.13 GAJ46491.1 - 2.1e-09 37.2 0.0 4.5e-09 36.1 0.0 1.5 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp PF02222.22 GAJ46491.1 - 9.3e-07 28.6 0.0 2.9e-06 27.0 0.0 1.7 1 1 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.14 GAJ46491.1 - 0.0011 19.1 0.0 0.0022 18.1 0.0 1.6 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.6 GAJ46491.1 - 0.0011 18.7 0.0 0.0024 17.6 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATPgrasp_ST PF14397.6 GAJ46491.1 - 0.033 13.4 0.0 0.35 10.1 0.0 2.1 2 0 0 2 2 2 0 Sugar-transfer associated ATP-grasp CENP-M PF11111.8 GAJ46491.1 - 0.04 13.1 0.0 0.077 12.2 0.0 1.4 1 0 0 1 1 1 0 Centromere protein M (CENP-M) GARS_A PF01071.19 GAJ46491.1 - 0.096 12.4 0.0 0.28 10.9 0.0 1.7 2 0 0 2 2 2 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain TLE_N PF03920.15 GAJ46492.1 - 0.033 14.3 0.2 0.1 12.7 0.2 1.8 1 0 0 1 1 1 0 Groucho/TLE N-terminal Q-rich domain Y_phosphatase PF00102.27 GAJ46492.1 - 0.067 12.7 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 Protein-tyrosine phosphatase DUF2624 PF11116.8 GAJ46492.1 - 0.14 13.1 1.7 18 6.3 0.0 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2624) HTH_23 PF13384.6 GAJ46493.1 - 0.00075 19.2 0.1 0.0012 18.6 0.1 1.4 1 0 0 1 1 1 1 Homeodomain-like domain Terminase_5 PF06056.12 GAJ46493.1 - 0.049 13.5 0.0 0.072 13.0 0.0 1.3 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) HTH_38 PF13936.6 GAJ46493.1 - 0.13 12.1 0.2 0.34 10.7 0.1 1.7 1 1 1 2 2 2 0 Helix-turn-helix domain PCRF PF03462.18 GAJ46494.1 - 7.3e-50 169.5 0.1 1.4e-49 168.6 0.0 1.5 2 0 0 2 2 2 1 PCRF domain RF-1 PF00472.20 GAJ46494.1 - 4.4e-41 139.5 0.2 7.3e-41 138.8 0.2 1.3 1 0 0 1 1 1 1 RF-1 domain Aminotran_5 PF00266.19 GAJ46495.1 - 1.8e-72 244.3 0.0 2.3e-72 244.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 GAJ46495.1 - 4e-05 23.1 0.0 5.9e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 GAJ46495.1 - 0.0028 17.0 0.0 0.0039 16.5 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cir_N PF10197.9 GAJ46495.1 - 0.4 10.9 1.4 0.71 10.1 1.4 1.4 1 0 0 1 1 1 0 N-terminal domain of CBF1 interacting co-repressor CIR NifU_N PF01592.16 GAJ46496.1 - 6.2e-48 162.2 0.3 7e-48 162.0 0.3 1.0 1 0 0 1 1 1 1 NifU-like N terminal domain DUF5633 PF18656.1 GAJ46496.1 - 0.046 13.6 1.6 0.094 12.6 1.6 1.5 1 0 0 1 1 1 0 Family of unknown function (DUF5633) Proteasome PF00227.26 GAJ46496.1 - 0.09 12.3 0.6 0.13 11.7 0.1 1.5 2 0 0 2 2 2 0 Proteasome subunit Ldh_1_N PF00056.23 GAJ46497.1 - 2.9e-30 105.2 0.0 4.1e-30 104.7 0.0 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.18 GAJ46497.1 - 1.2e-11 44.8 0.0 1.9e-11 44.2 0.0 1.3 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain 3HCDH_N PF02737.18 GAJ46497.1 - 0.0045 16.9 0.1 0.0079 16.1 0.1 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 GAJ46497.1 - 0.057 12.8 0.0 0.13 11.6 0.0 1.6 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HlyD_D23 PF16576.5 GAJ46498.1 - 1.6e-08 34.1 2.2 2.8e-08 33.3 2.2 1.4 1 1 0 1 1 1 1 Barrel-sandwich domain of CusB or HlyD membrane-fusion HlyD_3 PF13437.6 GAJ46498.1 - 2.3e-08 34.7 1.1 2.6e-07 31.3 0.2 2.5 2 1 0 2 2 2 1 HlyD family secretion protein Biotin_lipoyl_2 PF13533.6 GAJ46498.1 - 0.0032 17.3 0.1 0.0032 17.3 0.1 2.7 3 0 0 3 3 3 1 Biotin-lipoyl like Biotin_lipoyl PF00364.22 GAJ46498.1 - 0.0032 17.3 6.1 0.036 13.9 0.1 4.1 3 1 1 4 4 4 1 Biotin-requiring enzyme Alkyl_sulf_dimr PF14863.6 GAJ46498.1 - 0.049 14.1 0.1 0.61 10.5 0.0 2.2 1 1 1 2 2 2 0 Alkyl sulfatase dimerisation T2SSB PF16537.5 GAJ46498.1 - 0.17 11.5 1.7 0.29 10.7 0.1 2.3 2 1 1 3 3 3 0 Type II secretion system protein B ACR_tran PF00873.19 GAJ46499.1 - 3.5e-185 617.6 0.5 4.2e-185 617.3 0.5 1.0 1 0 0 1 1 1 1 AcrB/AcrD/AcrF family MMPL PF03176.15 GAJ46499.1 - 2.8e-11 43.0 8.9 7.6e-11 41.5 7.3 2.0 2 0 0 2 2 2 1 MMPL family SecD_SecF PF02355.16 GAJ46499.1 - 0.077 12.4 14.8 0.16 11.4 14.8 1.4 1 0 0 1 1 1 0 Protein export membrane protein ACR_tran PF00873.19 GAJ46500.1 - 6e-49 166.6 13.4 7e-49 166.4 13.4 1.0 1 0 0 1 1 1 1 AcrB/AcrD/AcrF family MMPL PF03176.15 GAJ46500.1 - 0.00075 18.5 7.2 0.00085 18.3 7.2 1.0 1 0 0 1 1 1 1 MMPL family CitMHS PF03600.16 GAJ46500.1 - 0.022 13.9 5.1 0.027 13.7 5.1 1.1 1 0 0 1 1 1 0 Citrate transporter UL45 PF05473.12 GAJ46500.1 - 0.24 11.0 1.7 0.39 10.3 1.7 1.5 1 0 0 1 1 1 0 UL45 protein, carbohydrate-binding C-type lectin-like HKR_ArcB_TM PF18415.1 GAJ46500.1 - 7.1 7.5 9.2 0.28 12.0 0.7 2.4 2 1 0 2 2 2 0 Histidine kinase receptor ArcB trans-membrane domain tRNA-synt_2d PF01409.20 GAJ46501.1 - 1.9e-91 305.9 0.0 2.5e-91 305.5 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) Phe_tRNA-synt_N PF02912.18 GAJ46501.1 - 1.2e-14 54.0 7.8 1.9e-14 53.3 7.8 1.3 1 0 0 1 1 1 1 Aminoacyl tRNA synthetase class II, N-terminal domain DUF3208 PF11482.8 GAJ46501.1 - 0.083 13.2 0.5 56 4.1 0.0 3.1 2 1 0 3 3 3 0 Protein of unknown function (DUF3208) Tho2 PF11262.8 GAJ46501.1 - 0.1 11.8 0.4 0.16 11.2 0.4 1.2 1 0 0 1 1 1 0 Transcription factor/nuclear export subunit protein 2 LZ_Tnp_IS66 PF13007.7 GAJ46501.1 - 0.44 11.4 2.2 0.89 10.4 2.2 1.5 1 1 0 1 1 1 0 Transposase C of IS166 homeodomain tRNA-synt_1e PF01406.19 GAJ46502.1 - 1.2e-112 376.2 0.0 3.3e-112 374.7 0.0 1.6 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.11 GAJ46502.1 - 5.3e-13 48.5 0.0 1.3e-05 24.2 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1f PF01921.18 GAJ46502.1 - 1.1e-07 31.1 0.0 0.0012 17.9 0.0 2.4 3 0 0 3 3 3 2 tRNA synthetases class I (K) tRNA-synt_1 PF00133.22 GAJ46502.1 - 9.5e-07 27.4 0.0 9.7e-06 24.1 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetases class I (I, L, M and V) DALR_2 PF09190.11 GAJ46502.1 - 0.00019 21.9 0.2 0.003 18.0 0.0 2.6 1 1 1 2 2 2 1 DALR domain UVR PF02151.19 GAJ46502.1 - 1.4 8.8 5.6 2.6 7.9 5.6 1.4 1 0 0 1 1 1 0 UvrB/uvrC motif Glyco_transf_25 PF01755.17 GAJ46503.1 - 6.3e-20 71.9 0.0 2.9e-18 66.5 0.0 2.1 1 1 0 1 1 1 1 Glycosyltransferase family 25 (LPS biosynthesis protein) MotA_ExbB PF01618.16 GAJ46506.1 - 0.00014 21.6 0.1 0.00043 20.0 0.1 1.8 1 1 0 1 1 1 1 MotA/TolQ/ExbB proton channel family DUF3267 PF11667.8 GAJ46506.1 - 2.8 8.3 8.6 4.9 7.5 6.9 2.2 2 0 0 2 2 2 0 Putative zincin peptidase MutS_I PF01624.20 GAJ46507.1 - 2.9e-42 143.4 0.0 6.2e-42 142.4 0.0 1.6 1 0 0 1 1 1 1 MutS domain I MutS_III PF05192.18 GAJ46507.1 - 3.1e-26 92.8 0.0 5e-26 92.1 0.0 1.3 1 0 0 1 1 1 1 MutS domain III MutS_II PF05188.17 GAJ46507.1 - 2.3e-19 70.1 0.0 4.2e-19 69.2 0.0 1.4 1 0 0 1 1 1 1 MutS domain II MutS_V PF00488.21 GAJ46508.1 - 1.1e-82 276.6 0.1 2.2e-82 275.7 0.0 1.5 2 0 0 2 2 2 1 MutS domain V MutS_IV PF05190.18 GAJ46508.1 - 8.9e-13 48.4 0.2 2.5e-12 47.0 0.0 1.9 2 0 0 2 2 2 1 MutS family domain IV AAA_23 PF13476.6 GAJ46508.1 - 0.0018 18.8 0.0 0.48 10.9 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.6 GAJ46508.1 - 0.066 13.0 0.0 0.2 11.4 0.0 1.8 1 1 0 1 1 1 0 P-loop containing region of AAA domain AAA_27 PF13514.6 GAJ46508.1 - 0.1 12.2 0.1 0.25 10.9 0.0 1.6 2 0 0 2 2 2 0 AAA domain Response_reg PF00072.24 GAJ46509.1 - 3.9e-18 65.7 0.0 6e-18 65.1 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 GAJ46509.1 - 1.2e-14 54.2 0.0 2.1e-14 53.3 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal LptC PF06835.13 GAJ46510.1 - 1.5e-06 27.9 0.0 1.8e-06 27.6 0.0 1.1 1 0 0 1 1 1 1 Lipopolysaccharide-assembly, LptC-related Fer2 PF00111.27 GAJ46511.1 - 1.1e-09 38.1 0.5 1.5e-09 37.7 0.5 1.3 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain DAP_epimerase PF01678.19 GAJ46512.1 - 4.7e-15 55.8 0.0 1.6e-08 34.7 0.0 2.3 2 0 0 2 2 2 2 Diaminopimelate epimerase Methyltransf_23 PF13489.6 GAJ46513.1 - 6.8e-16 58.5 0.0 1.1e-15 57.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 GAJ46513.1 - 1.7e-11 44.6 0.0 3e-11 43.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 GAJ46513.1 - 5.1e-10 39.9 0.0 8.5e-10 39.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 GAJ46513.1 - 1.3e-09 38.1 0.0 1.7e-09 37.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 GAJ46513.1 - 1.7e-08 35.1 0.0 2.8e-08 34.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain NodS PF05401.11 GAJ46513.1 - 5.8e-06 26.1 0.0 7.9e-06 25.6 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) CMAS PF02353.20 GAJ46513.1 - 0.00051 19.4 0.0 0.00068 19.0 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PrmA PF06325.13 GAJ46513.1 - 0.0014 18.1 0.0 0.0017 17.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 GAJ46513.1 - 0.0017 18.0 0.0 0.0032 17.0 0.0 1.4 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_9 PF08003.11 GAJ46513.1 - 0.006 15.5 0.0 0.0086 15.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Glycos_transf_4 PF00953.21 GAJ46514.1 - 8.9e-25 87.5 12.1 8.9e-25 87.5 12.1 1.7 2 0 0 2 2 2 1 Glycosyl transferase family 4 MraY_sig1 PF10555.9 GAJ46515.1 - 0.025 14.1 4.9 0.056 13.0 4.9 1.6 1 0 0 1 1 1 0 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AceK PF06315.11 GAJ46516.1 - 0.0068 15.0 0.0 0.012 14.1 0.0 1.4 1 0 0 1 1 1 1 Isocitrate dehydrogenase kinase/phosphatase (AceK) ATP-synt_D PF01813.17 GAJ46516.1 - 0.046 13.5 0.0 0.099 12.5 0.0 1.5 1 0 0 1 1 1 0 ATP synthase subunit D DDE_3 PF13358.6 GAJ46517.1 - 4.3e-12 46.0 0.0 4.8e-12 45.9 0.0 1.0 1 0 0 1 1 1 1 DDE superfamily endonuclease TruB_N PF01509.18 GAJ46518.1 - 4.8e-44 150.3 0.0 6.2e-44 150.0 0.0 1.1 1 0 0 1 1 1 1 TruB family pseudouridylate synthase (N terminal domain) TruB_C_2 PF16198.5 GAJ46518.1 - 1.2e-08 35.0 0.0 2.1e-08 34.2 0.0 1.4 1 0 0 1 1 1 1 tRNA pseudouridylate synthase B C-terminal domain Ribosomal_S15 PF00312.22 GAJ46519.1 - 3.8e-28 97.5 0.4 4.6e-28 97.3 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein S15 RNase_PH PF01138.21 GAJ46520.1 - 2.6e-38 131.5 0.0 7.1e-20 71.9 0.0 2.3 2 0 0 2 2 2 2 3' exoribonuclease family, domain 1 S1 PF00575.23 GAJ46520.1 - 7.6e-14 51.8 0.3 1.6e-13 50.8 0.3 1.5 1 0 0 1 1 1 1 S1 RNA binding domain KH_1 PF00013.29 GAJ46520.1 - 3.6e-08 33.1 0.2 9.3e-08 31.8 0.2 1.8 1 0 0 1 1 1 1 KH domain RNase_PH_C PF03725.15 GAJ46520.1 - 0.00015 21.7 0.2 0.16 12.0 0.1 3.3 2 1 0 2 2 2 2 3' exoribonuclease family, domain 2 DUF3016 PF11454.8 GAJ46520.1 - 0.0014 18.4 0.1 0.071 12.9 0.0 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF3016) PNPase PF03726.14 GAJ46520.1 - 0.0071 16.8 0.0 0.014 15.9 0.0 1.5 1 0 0 1 1 1 1 Polyribonucleotide nucleotidyltransferase, RNA binding domain KH_2 PF07650.17 GAJ46520.1 - 0.018 14.9 0.1 0.058 13.2 0.1 2.0 1 1 0 1 1 1 0 KH domain RNase_E_G PF10150.9 GAJ46521.1 - 7.7e-90 301.0 0.4 1.6e-89 299.9 0.4 1.6 1 0 0 1 1 1 1 Ribonuclease E/G family S1 PF00575.23 GAJ46521.1 - 0.0015 18.8 0.1 0.053 13.9 0.0 3.0 2 0 0 2 2 2 1 S1 RNA binding domain HTH_23 PF13384.6 GAJ46522.1 - 0.0012 18.6 0.0 0.0018 18.0 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain HTH_38 PF13936.6 GAJ46522.1 - 0.0038 17.0 0.0 0.0073 16.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_psq PF05225.16 GAJ46522.1 - 0.078 12.7 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 helix-turn-helix, Psq domain HTH_7 PF02796.15 GAJ46522.1 - 0.11 12.6 0.0 0.17 12.0 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase Sigma70_r4_2 PF08281.12 GAJ46522.1 - 0.17 11.6 0.0 0.36 10.5 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 FAD_binding_3 PF01494.19 GAJ46524.1 - 2.6e-14 53.2 0.3 1.6e-06 27.6 0.0 2.4 2 1 0 2 2 2 2 FAD binding domain DAO PF01266.24 GAJ46524.1 - 9.2e-05 22.2 0.4 0.00014 21.6 0.4 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 GAJ46524.1 - 0.00034 19.8 0.1 0.00047 19.3 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.6 GAJ46524.1 - 0.0009 19.4 0.1 0.0022 18.2 0.1 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain SE PF08491.10 GAJ46524.1 - 0.00095 18.3 0.0 0.0018 17.4 0.0 1.4 1 0 0 1 1 1 1 Squalene epoxidase Pyr_redox_3 PF13738.6 GAJ46524.1 - 0.013 14.8 0.5 0.023 13.9 0.5 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 GAJ46524.1 - 0.023 13.4 0.1 0.043 12.5 0.1 1.4 1 0 0 1 1 1 0 HI0933-like protein GIDA PF01134.22 GAJ46524.1 - 0.031 13.3 0.0 5.2 6.0 0.0 2.1 2 0 0 2 2 2 0 Glucose inhibited division protein A Pyr_redox PF00070.27 GAJ46524.1 - 0.15 12.7 0.3 0.45 11.1 0.3 1.8 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 GAJ46524.1 - 0.16 11.2 0.1 0.27 10.4 0.1 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 GAJ46524.1 - 0.17 11.2 0.1 0.28 10.5 0.1 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain UDPG_MGDP_dh_N PF03721.14 GAJ46524.1 - 0.21 11.1 0.2 0.33 10.5 0.2 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CBM26 PF16738.5 GAJ46525.1 - 0.097 13.0 0.1 0.18 12.1 0.1 1.4 1 0 0 1 1 1 0 Starch-binding module 26 NAD_Gly3P_dh_C PF07479.14 GAJ46526.1 - 3.1e-17 63.2 0.0 5.7e-17 62.3 0.0 1.4 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus NAD_Gly3P_dh_N PF01210.23 GAJ46526.1 - 4.4e-17 62.5 0.0 4.5e-13 49.5 0.0 2.3 1 1 1 2 2 2 2 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus F420_oxidored PF03807.17 GAJ46526.1 - 2.6e-05 24.7 0.0 4.6e-05 23.9 0.0 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent DDE_Tnp_1 PF01609.21 GAJ46527.1 - 4.3e-07 29.8 0.0 4.6e-07 29.7 0.0 1.1 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.12 GAJ46527.1 - 0.0019 17.5 0.0 0.0021 17.4 0.0 1.1 1 0 0 1 1 1 1 Archaeal putative transposase ISC1217 DUF4096 PF13340.6 GAJ46528.1 - 0.036 14.3 0.0 0.05 13.8 0.0 1.2 1 0 0 1 1 1 0 Putative transposase of IS4/5 family (DUF4096) Mg_chelatase PF01078.21 GAJ46529.1 - 1e-81 273.2 0.0 1.5e-81 272.7 0.0 1.2 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI ChlI PF13541.6 GAJ46529.1 - 4.5e-35 120.1 0.0 7.9e-35 119.3 0.0 1.4 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase Mg_chelatase_C PF13335.6 GAJ46529.1 - 4.2e-18 65.8 0.2 7.9e-18 64.9 0.2 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI C-terminal MCM PF00493.23 GAJ46529.1 - 1.2e-09 37.6 0.0 5.6e-07 28.9 0.0 2.3 2 0 0 2 2 2 2 MCM P-loop domain AAA_5 PF07728.14 GAJ46529.1 - 2.5e-08 34.0 0.0 3.3e-07 30.4 0.0 2.2 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.26 GAJ46529.1 - 8.3e-06 25.6 0.0 0.0073 16.0 0.0 2.3 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA PF00004.29 GAJ46529.1 - 1.7e-05 25.2 0.0 7e-05 23.3 0.0 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 GAJ46529.1 - 0.002 17.7 0.1 0.021 14.4 0.1 2.2 2 0 0 2 2 2 1 P-loop containing dynein motor region AAA_30 PF13604.6 GAJ46529.1 - 0.015 15.0 0.0 0.47 10.2 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 GAJ46529.1 - 0.03 14.5 0.3 0.16 12.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 GAJ46529.1 - 0.059 13.8 0.3 0.46 10.9 0.1 2.3 2 0 0 2 2 2 0 AAA ATPase domain ABC_tran PF00005.27 GAJ46529.1 - 0.062 13.8 0.0 0.17 12.4 0.0 1.8 1 0 0 1 1 1 0 ABC transporter AAA_22 PF13401.6 GAJ46529.1 - 0.068 13.4 0.0 0.2 11.9 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 GAJ46529.1 - 0.089 12.5 0.2 0.2 11.4 0.2 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_2 PF07724.14 GAJ46529.1 - 0.11 12.6 0.0 0.73 9.9 0.0 2.1 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) IstB_IS21 PF01695.17 GAJ46529.1 - 0.19 11.4 0.1 0.4 10.4 0.1 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein SecD_SecF PF02355.16 GAJ46530.1 - 2.1e-16 59.9 9.6 4.1e-16 58.9 9.6 1.5 1 0 0 1 1 1 1 Protein export membrane protein MMPL PF03176.15 GAJ46530.1 - 7.3e-07 28.4 11.3 1.4e-06 27.5 11.3 1.5 1 0 0 1 1 1 1 MMPL family Sec_GG PF07549.14 GAJ46530.1 - 1.2e-06 27.8 0.0 2.4e-06 26.8 0.0 1.5 1 0 0 1 1 1 1 SecD/SecF GG Motif ACR_tran PF00873.19 GAJ46530.1 - 7e-06 24.0 15.4 1.6e-05 22.9 11.4 2.0 2 0 0 2 2 2 2 AcrB/AcrD/AcrF family Glyco_hydro_106 PF17132.4 GAJ46530.1 - 0.062 11.6 0.7 0.085 11.1 0.7 1.1 1 0 0 1 1 1 0 alpha-L-rhamnosidase MgtE PF01769.16 GAJ46530.1 - 5.9 7.3 15.2 2 8.8 3.6 2.8 3 0 0 3 3 3 0 Divalent cation transporter Sec_GG PF07549.14 GAJ46531.1 - 1.5e-08 33.8 0.2 2.4e-08 33.2 0.2 1.4 1 0 0 1 1 1 1 SecD/SecF GG Motif DUF4400 PF14348.6 GAJ46531.1 - 0.89 9.0 3.0 1.2 8.6 3.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4400) SecD_SecF PF02355.16 GAJ46532.1 - 6.3e-52 175.7 7.4 7e-52 175.6 7.4 1.0 1 0 0 1 1 1 1 Protein export membrane protein tRNA-synt_2c PF01411.19 GAJ46533.1 - 3.6e-66 223.8 0.5 4e-66 223.7 0.5 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA-synt_2c PF01411.19 GAJ46534.1 - 5.6e-117 391.5 0.0 9.5e-117 390.8 0.0 1.3 2 0 0 2 2 2 1 tRNA synthetases class II (A) tRNA_SAD PF07973.14 GAJ46534.1 - 1.4e-19 69.9 0.9 4.9e-19 68.2 0.9 2.0 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain DDE_3 PF13358.6 GAJ46536.1 - 9.1e-05 22.2 0.0 0.00011 21.9 0.0 1.1 1 0 0 1 1 1 1 DDE superfamily endonuclease Thioredoxin_4 PF13462.6 GAJ46539.1 - 5.3e-06 26.7 0.4 8.6e-06 26.0 0.4 1.4 1 0 0 1 1 1 1 Thioredoxin Thioredoxin PF00085.20 GAJ46539.1 - 0.00033 20.6 0.3 0.033 14.2 0.1 2.5 2 1 0 2 2 2 1 Thioredoxin Thioredoxin_8 PF13905.6 GAJ46539.1 - 0.003 17.9 0.3 1.4 9.3 0.0 2.6 2 0 0 2 2 2 2 Thioredoxin-like AhpC-TSA PF00578.21 GAJ46539.1 - 0.072 13.0 0.2 14 5.6 0.1 2.3 2 0 0 2 2 2 0 AhpC/TSA family CSTF2_hinge PF14327.6 GAJ46539.1 - 0.11 13.0 0.0 2.2 8.8 0.0 2.4 2 0 0 2 2 2 0 Hinge domain of cleavage stimulation factor subunit 2 Cpn60_TCP1 PF00118.24 GAJ46540.1 - 3.4e-92 309.6 11.0 4.9e-92 309.1 11.0 1.2 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family ChlI PF13541.6 GAJ46540.1 - 0.081 12.8 0.7 12 5.8 0.1 3.1 2 1 1 3 3 3 0 Subunit ChlI of Mg-chelatase Alpha-2-MRAP_C PF06401.11 GAJ46540.1 - 0.19 11.7 0.0 0.67 9.9 0.0 1.8 2 0 0 2 2 2 0 Alpha-2-macroglobulin RAP, C-terminal domain Cpn10 PF00166.21 GAJ46541.1 - 6.8e-35 119.0 0.1 7.5e-35 118.9 0.1 1.0 1 0 0 1 1 1 1 Chaperonin 10 Kd subunit GatD_N PF18195.1 GAJ46541.1 - 0.0096 15.2 0.1 3.5 7.0 0.0 3.0 1 1 2 3 3 3 2 GatD N-terminal domain Trans_reg_C PF00486.28 GAJ46543.1 - 2.6e-11 43.4 0.4 4.9e-11 42.5 0.4 1.4 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal Bac_DNA_binding PF00216.21 GAJ46544.1 - 1.6e-25 89.1 0.1 1.8e-25 88.9 0.1 1.0 1 0 0 1 1 1 1 Bacterial DNA-binding protein HU-HIG PF18291.1 GAJ46544.1 - 1.1e-10 41.7 0.1 1.3e-10 41.4 0.1 1.1 1 0 0 1 1 1 1 HU domain fused to wHTH, Ig, or Glycine-rich motif HU-CCDC81_euk_1 PF14908.6 GAJ46544.1 - 8.1e-05 22.7 0.0 9.6e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 CCDC81 eukaryotic HU domain 1 HU-DNA_bdg PF14848.6 GAJ46544.1 - 0.00057 19.9 0.1 0.0026 17.7 0.1 1.9 1 1 0 1 1 1 1 DNA-binding domain HU-CCDC81_bac_2 PF18175.1 GAJ46544.1 - 0.0012 18.6 0.0 0.0019 18.1 0.0 1.2 1 0 0 1 1 1 1 CCDC81-like prokaryotic HU domain 2 MarR PF01047.22 GAJ46544.1 - 0.04 13.9 0.0 0.074 13.0 0.0 1.4 1 0 0 1 1 1 0 MarR family HU-CCDC81_euk_2 PF18289.1 GAJ46544.1 - 0.051 13.7 0.1 0.088 13.0 0.1 1.3 1 0 0 1 1 1 0 CCDC81 eukaryotic HU domain 2 OMP_b-brl PF13505.6 GAJ46545.1 - 0.011 15.9 0.6 0.011 15.9 0.6 2.4 2 1 0 2 2 2 0 Outer membrane protein beta-barrel domain AIM24 PF01987.17 GAJ46545.1 - 0.037 13.8 0.2 0.097 12.5 0.2 1.7 1 0 0 1 1 1 0 Mitochondrial biogenesis AIM24 DDE_3 PF13358.6 GAJ46547.1 - 0.00091 19.0 0.0 0.00091 19.0 0.0 1.0 1 0 0 1 1 1 1 DDE superfamily endonuclease CTD_bind PF04818.13 GAJ46548.1 - 0.17 12.7 0.6 0.17 12.7 0.6 2.9 3 1 0 3 3 3 0 RNA polymerase II-binding domain. E1-E2_ATPase PF00122.20 GAJ46548.1 - 0.18 11.3 0.5 0.42 10.1 0.3 1.6 1 1 0 1 1 1 0 E1-E2 ATPase Phage_ABA_S PF18066.1 GAJ46548.1 - 0.51 11.1 5.5 3 8.6 1.1 3.0 1 1 1 2 2 2 0 Phage ABA sandwich domain ZnuA PF01297.17 GAJ46548.1 - 0.58 9.5 6.4 0.094 12.1 2.8 1.6 2 0 0 2 2 2 0 Zinc-uptake complex component A periplasmic LRR_4 PF12799.7 GAJ46549.1 - 1.1e-11 44.8 1.6 5.7e-07 29.8 0.2 3.8 1 1 5 6 6 6 3 Leucine Rich repeats (2 copies) LRR_8 PF13855.6 GAJ46549.1 - 7.6e-06 25.6 0.8 0.029 14.1 0.1 2.6 2 0 0 2 2 2 2 Leucine rich repeat LRR_6 PF13516.6 GAJ46549.1 - 2.1e-05 24.2 0.0 0.33 11.1 0.0 2.9 2 0 0 2 2 2 2 Leucine Rich repeat LRR_9 PF14580.6 GAJ46549.1 - 0.0036 16.8 0.4 0.0085 15.6 0.4 1.7 1 0 0 1 1 1 1 Leucine-rich repeat LRR_1 PF00560.33 GAJ46549.1 - 0.029 14.9 1.5 13 6.8 0.4 4.0 3 1 0 3 3 3 0 Leucine Rich Repeat FNIP PF05725.12 GAJ46549.1 - 0.42 10.8 4.4 3.3 7.9 0.6 3.6 2 1 1 3 3 3 0 FNIP Repeat HTH_23 PF13384.6 GAJ46550.1 - 3.5e-05 23.5 0.0 5.3e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain HTH_38 PF13936.6 GAJ46550.1 - 0.001 18.8 0.0 0.0017 18.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_psq PF05225.16 GAJ46550.1 - 0.013 15.2 0.1 0.023 14.4 0.1 1.4 1 0 0 1 1 1 0 helix-turn-helix, Psq domain HTH_7 PF02796.15 GAJ46550.1 - 0.017 15.1 0.0 0.029 14.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_28 PF13518.6 GAJ46550.1 - 0.022 14.9 0.0 0.036 14.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 GAJ46550.1 - 0.06 13.0 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_24 PF13412.6 GAJ46550.1 - 0.074 12.6 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 GAJ46550.1 - 0.088 12.8 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 HTH domain HTH_AsnC-type PF13404.6 GAJ46550.1 - 0.1 12.4 0.0 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_Tnp_4 PF13613.6 GAJ46550.1 - 0.12 12.1 0.0 0.22 11.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease Terminase_5 PF06056.12 GAJ46550.1 - 0.13 12.2 0.2 0.43 10.5 0.0 1.9 2 1 0 2 2 2 0 Putative ATPase subunit of terminase (gpP-like) GerE PF00196.19 GAJ46550.1 - 0.13 11.8 0.0 0.23 11.1 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family G6B PF15096.6 GAJ46553.1 - 0.14 12.0 0.0 0.17 11.6 0.0 1.2 1 0 0 1 1 1 0 G6B family Elongin_A PF06881.11 GAJ46553.1 - 0.29 11.7 9.6 3.9 8.0 4.5 2.8 1 1 1 2 2 2 0 RNA polymerase II transcription factor SIII (Elongin) subunit A OMP_b-brl PF13505.6 GAJ46554.1 - 9e-07 29.2 0.0 0.003 17.7 0.0 2.8 1 1 1 2 2 2 2 Outer membrane protein beta-barrel domain OmpA_membrane PF01389.17 GAJ46554.1 - 0.00075 19.3 0.0 0.0017 18.1 0.0 1.5 1 1 0 1 1 1 1 OmpA-like transmembrane domain DUF5512 PF17631.2 GAJ46554.1 - 0.12 12.4 0.1 0.22 11.5 0.1 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5512) OMP_b-brl PF13505.6 GAJ46555.1 - 6.7e-06 26.4 4.6 0.00017 21.8 0.0 2.7 1 1 0 2 2 2 1 Outer membrane protein beta-barrel domain OmpA_membrane PF01389.17 GAJ46555.1 - 0.00023 20.9 0.0 0.0004 20.2 0.0 1.3 1 0 0 1 1 1 1 OmpA-like transmembrane domain Opacity PF02462.15 GAJ46555.1 - 0.1 12.7 0.2 0.25 11.5 0.0 1.7 2 0 0 2 2 2 0 Opacity family porin protein DDE_Tnp_1 PF01609.21 GAJ46556.1 - 0.00085 19.0 0.0 0.00085 19.0 0.0 1.0 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 GAJ46556.1 - 0.033 14.2 0.1 0.033 14.2 0.1 1.0 1 0 0 1 1 1 0 Transposase DDE domain OMP_b-brl PF13505.6 GAJ46558.1 - 2.8e-05 24.3 0.0 0.0086 16.2 0.0 2.4 1 1 0 2 2 2 2 Outer membrane protein beta-barrel domain OmpA_membrane PF01389.17 GAJ46558.1 - 0.0065 16.2 0.0 0.014 15.1 0.0 1.5 1 0 0 1 1 1 1 OmpA-like transmembrane domain DDE_Tnp_1 PF01609.21 GAJ46560.1 - 0.00034 20.3 0.0 0.00035 20.3 0.0 1.0 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 GAJ46560.1 - 0.027 14.5 0.0 0.03 14.4 0.0 1.0 1 0 0 1 1 1 0 Transposase DDE domain Glycos_transf_1 PF00534.20 GAJ46561.1 - 1.8e-27 95.9 0.0 4.7e-27 94.6 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 GAJ46561.1 - 4.1e-23 82.3 0.0 6.6e-23 81.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 GAJ46561.1 - 9.7e-09 35.4 0.0 2.1e-08 34.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.6 GAJ46561.1 - 0.0025 18.2 0.0 0.0052 17.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 DHHA1 PF02272.19 GAJ46562.1 - 1.2e-14 55.0 0.0 2e-14 54.2 0.0 1.3 1 0 0 1 1 1 1 DHHA1 domain RecJ_OB PF17768.1 GAJ46562.1 - 1.6e-13 50.8 0.0 3.1e-13 49.9 0.0 1.5 1 0 0 1 1 1 1 RecJ OB domain DHH PF01368.20 GAJ46562.1 - 3.5e-10 40.0 0.0 6.3e-10 39.2 0.0 1.4 1 0 0 1 1 1 1 DHH family DeoRC PF00455.22 GAJ46562.1 - 0.12 12.3 0.1 20 5.1 0.0 2.3 2 0 0 2 2 2 0 DeoR C terminal sensor domain Toprim PF01751.22 GAJ46562.1 - 0.12 12.6 0.0 0.96 9.7 0.0 2.1 2 0 0 2 2 2 0 Toprim domain SmpB PF01668.18 GAJ46566.1 - 1.2e-15 57.7 0.2 1.2e-15 57.6 0.2 1.0 1 0 0 1 1 1 1 SmpB protein DUF3971 PF13116.6 GAJ46569.1 - 1.1e-10 41.6 0.5 1.1e-10 41.6 0.5 2.2 3 0 0 3 3 3 1 Protein of unknown function AsmA_1 PF13109.6 GAJ46569.1 - 1.7e-07 30.9 0.2 1.7e-07 30.9 0.2 3.5 4 0 0 4 4 4 2 AsmA-like C-terminal region AsmA_2 PF13502.6 GAJ46569.1 - 0.0015 18.1 0.1 0.0062 16.1 0.1 2.2 1 1 1 2 2 2 1 AsmA-like C-terminal region Cut8 PF08559.10 GAJ46569.1 - 0.008 15.8 0.2 0.3 10.7 0.0 2.2 2 0 0 2 2 2 1 Cut8, nuclear proteasome tether protein UPF0102 PF02021.17 GAJ46570.1 - 9.1e-12 45.1 0.0 1.2e-11 44.7 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised protein family UPF0102 NERD PF08378.11 GAJ46570.1 - 0.00014 22.3 0.0 0.00017 22.0 0.0 1.2 1 0 0 1 1 1 1 Nuclease-related domain NucS PF01939.16 GAJ46570.1 - 0.00074 18.9 0.0 0.00092 18.6 0.0 1.1 1 0 0 1 1 1 1 Endonuclease NucS DUF4143 PF13635.6 GAJ46570.1 - 0.0044 17.2 0.0 0.006 16.7 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) Phage_portal PF04860.12 GAJ46572.1 - 3.7e-71 239.9 0.0 4.2e-71 239.7 0.0 1.0 1 0 0 1 1 1 1 Phage portal protein Peptidase_S78 PF04586.17 GAJ46573.1 - 2.5e-20 73.3 0.0 3.3e-20 72.9 0.0 1.1 1 0 0 1 1 1 1 Caudovirus prohead serine protease Phage_capsid PF05065.13 GAJ46574.1 - 1.1e-35 123.3 0.0 1.5e-35 122.9 0.0 1.1 1 0 0 1 1 1 1 Phage capsid family DUF16 PF01519.16 GAJ46574.1 - 0.055 14.0 0.4 0.13 12.7 0.3 1.7 2 0 0 2 2 2 0 Protein of unknown function DUF16 DUF5563 PF17718.1 GAJ46575.1 - 0.12 11.9 0.0 0.23 11.0 0.0 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5563) HTH_23 PF13384.6 GAJ46577.1 - 1.4e-06 28.0 0.0 2.1e-06 27.4 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.6 GAJ46577.1 - 0.00068 19.7 0.0 0.0011 19.0 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_psq PF05225.16 GAJ46577.1 - 0.0023 17.6 0.0 0.0037 17.0 0.0 1.3 1 0 0 1 1 1 1 helix-turn-helix, Psq domain HTH_38 PF13936.6 GAJ46577.1 - 0.0023 17.6 0.0 0.0047 16.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_4 PF13613.6 GAJ46577.1 - 0.0032 17.1 0.0 0.0045 16.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix of DDE superfamily endonuclease Terminase_5 PF06056.12 GAJ46577.1 - 0.0044 16.9 0.0 0.0073 16.2 0.0 1.3 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_7 PF02796.15 GAJ46577.1 - 0.025 14.6 0.0 0.041 14.0 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase GerE PF00196.19 GAJ46577.1 - 0.061 12.9 0.0 0.1 12.1 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 GAJ46577.1 - 0.072 12.8 0.0 0.14 11.8 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_24 PF13412.6 GAJ46577.1 - 0.11 12.1 0.0 0.19 11.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_Tnp_ISL3 PF13542.6 GAJ46577.1 - 0.12 11.8 0.0 0.17 11.4 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_10 PF04967.12 GAJ46577.1 - 0.14 11.9 0.0 0.28 11.0 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain rve_2 PF13333.6 GAJ46578.1 - 0.0055 16.8 0.1 0.0081 16.3 0.1 1.3 1 0 0 1 1 1 1 Integrase core domain CBM_4_9 PF02018.17 GAJ46578.1 - 0.18 12.1 0.0 0.21 11.9 0.0 1.1 1 0 0 1 1 1 0 Carbohydrate binding domain ABC_tran PF00005.27 GAJ46579.1 - 4.5e-32 111.4 0.0 8.1e-32 110.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.23 GAJ46579.1 - 2.3e-10 40.6 14.0 4.6e-10 39.6 14.0 1.5 1 1 0 1 1 1 1 ABC transporter transmembrane region SMC_N PF02463.19 GAJ46579.1 - 7.8e-07 28.7 0.5 1.5e-05 24.6 0.5 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 GAJ46579.1 - 0.00087 19.7 0.1 0.0018 18.7 0.1 1.5 1 0 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 GAJ46579.1 - 0.002 18.1 0.2 0.0069 16.3 0.0 2.0 2 0 0 2 2 2 1 RsgA GTPase AAA_22 PF13401.6 GAJ46579.1 - 0.017 15.4 2.3 0.67 10.2 1.5 3.0 2 1 0 2 2 2 0 AAA domain NTPase_1 PF03266.15 GAJ46579.1 - 0.03 14.2 1.9 2.5 8.0 0.1 2.3 1 1 1 2 2 2 0 NTPase AAA_24 PF13479.6 GAJ46579.1 - 0.043 13.5 0.4 0.17 11.6 0.3 2.1 1 1 1 2 2 2 0 AAA domain AAA_21 PF13304.6 GAJ46579.1 - 0.061 13.1 0.2 0.95 9.2 0.0 2.3 1 1 1 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system MobB PF03205.14 GAJ46579.1 - 0.072 13.0 0.5 0.17 11.8 0.1 1.8 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA PF00004.29 GAJ46579.1 - 0.082 13.3 0.8 1.1 9.7 0.8 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ATP-synt_ab PF00006.25 GAJ46579.1 - 0.18 11.5 0.0 0.3 10.7 0.0 1.4 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Pex24p PF06398.11 GAJ46579.1 - 2.5 7.0 5.6 4.3 6.2 5.6 1.3 1 0 0 1 1 1 0 Integral peroxisomal membrane peroxin DUF805 PF05656.14 GAJ46579.1 - 6.3 7.3 11.0 1.3 9.4 0.0 2.6 1 1 0 2 2 2 0 Protein of unknown function (DUF805) DDE_3 PF13358.6 GAJ46580.1 - 4.6e-09 36.2 0.1 6.9e-09 35.6 0.1 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease Peptidase_M1 PF01433.20 GAJ46580.1 - 0.057 13.0 0.0 0.074 12.6 0.0 1.1 1 0 0 1 1 1 0 Peptidase family M1 domain DDE_3 PF13358.6 GAJ46581.1 - 2e-10 40.6 0.1 2.9e-10 40.1 0.1 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease T4_Rnl2_C PF18043.1 GAJ46584.1 - 0.48 10.6 4.1 4.8 7.4 0.8 2.5 1 1 1 2 2 2 0 T4 RNA ligase 2 C-terminal Rtt106_N PF18215.1 GAJ46585.1 - 0.019 14.7 1.1 0.062 13.0 0.0 2.4 3 0 0 3 3 3 0 Histone chaperone Rtt106 N-terminal domain HTH_Tnp_IS630 PF01710.16 GAJ46588.1 - 3.1e-06 27.2 0.3 3.4e-06 27.1 0.3 1.1 1 0 0 1 1 1 1 Transposase HTH_23 PF13384.6 GAJ46588.1 - 0.0048 16.6 0.0 0.0076 16.0 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.6 GAJ46588.1 - 0.025 14.7 0.0 0.037 14.2 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Mga PF05043.13 GAJ46588.1 - 0.026 15.1 0.2 0.033 14.8 0.2 1.3 1 1 0 1 1 1 0 Mga helix-turn-helix domain Trp_repressor PF01371.19 GAJ46588.1 - 0.047 13.8 0.0 0.06 13.5 0.0 1.2 1 0 0 1 1 1 0 Trp repressor protein UPF0054 PF02130.17 GAJ46589.1 - 4.5e-25 87.9 0.0 5.8e-25 87.6 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein family UPF0054 Bromo_TP PF07524.13 GAJ46589.1 - 0.16 12.0 0.0 11 6.1 0.0 2.2 2 0 0 2 2 2 0 Bromodomain associated CorC_HlyC PF03471.17 GAJ46590.1 - 5e-14 52.1 0.0 1.7e-13 50.4 0.0 1.8 2 0 0 2 2 2 1 Transporter associated domain CBS PF00571.28 GAJ46590.1 - 6.3e-11 42.6 0.0 3.4e-05 24.2 0.0 2.5 2 0 0 2 2 2 2 CBS domain DUF374 PF04028.13 GAJ46593.1 - 6.2e-25 86.6 0.1 1e-24 85.8 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF374) DUF21 PF01595.20 GAJ46594.1 - 6.4e-30 104.2 5.3 9.2e-30 103.6 5.3 1.2 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain CBS PF00571.28 GAJ46594.1 - 6e-17 61.8 0.0 3e-08 34.0 0.0 3.4 3 0 0 3 3 3 2 CBS domain CorC_HlyC PF03471.17 GAJ46594.1 - 2.4e-15 56.3 0.0 5.6e-15 55.1 0.0 1.7 1 0 0 1 1 1 1 Transporter associated domain DUF3433 PF11915.8 GAJ46594.1 - 0.56 10.7 6.0 0.056 13.9 1.4 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3433) SKI PF01202.22 GAJ46595.1 - 3e-31 108.7 0.0 4.1e-31 108.2 0.0 1.2 1 0 0 1 1 1 1 Shikimate kinase AAA_18 PF13238.6 GAJ46595.1 - 1e-08 35.8 0.1 4.1e-07 30.6 0.1 2.4 1 1 0 1 1 1 1 AAA domain Cytidylate_kin2 PF13189.6 GAJ46595.1 - 1.4e-05 25.3 0.0 0.00011 22.4 0.0 1.9 1 1 0 2 2 2 1 Cytidylate kinase-like family AAA_17 PF13207.6 GAJ46595.1 - 8.3e-05 23.0 0.1 0.00061 20.2 0.0 2.2 1 1 1 2 2 2 1 AAA domain AAA_33 PF13671.6 GAJ46595.1 - 0.00035 20.7 0.0 0.00084 19.5 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 GAJ46595.1 - 0.0004 20.8 0.3 0.0012 19.3 0.1 2.0 2 1 1 3 3 3 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 GAJ46595.1 - 0.0017 18.6 0.1 0.0062 16.8 0.0 1.9 1 1 0 2 2 2 1 AAA domain ABC_tran PF00005.27 GAJ46595.1 - 0.003 18.1 0.0 0.005 17.4 0.0 1.7 1 1 0 1 1 1 1 ABC transporter CoaE PF01121.20 GAJ46595.1 - 0.0033 17.1 0.0 0.0055 16.4 0.0 1.3 1 0 0 1 1 1 1 Dephospho-CoA kinase AAA_24 PF13479.6 GAJ46595.1 - 0.0082 15.9 0.0 0.014 15.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 GAJ46595.1 - 0.016 15.6 0.1 0.022 15.1 0.1 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_5 PF07728.14 GAJ46595.1 - 0.027 14.5 0.0 0.053 13.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) NB-ARC PF00931.22 GAJ46595.1 - 0.034 13.3 0.2 0.075 12.2 0.2 1.5 1 0 0 1 1 1 0 NB-ARC domain AAA_28 PF13521.6 GAJ46595.1 - 0.05 13.8 0.0 0.078 13.2 0.0 1.5 1 1 0 1 1 1 0 AAA domain RuvB_N PF05496.12 GAJ46595.1 - 0.053 13.3 0.0 0.079 12.7 0.0 1.4 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain dNK PF01712.19 GAJ46595.1 - 0.092 12.6 0.1 0.66 9.8 0.0 2.1 1 1 1 2 2 2 0 Deoxynucleoside kinase MMR_HSR1 PF01926.23 GAJ46595.1 - 0.1 12.7 0.0 0.19 11.8 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase tRNA_lig_kinase PF08303.11 GAJ46595.1 - 0.2 11.7 0.0 0.3 11.1 0.0 1.3 1 0 0 1 1 1 0 tRNA ligase kinase domain Cytidylate_kin PF02224.18 GAJ46595.1 - 0.21 11.3 0.0 0.49 10.1 0.0 1.7 2 0 0 2 2 2 0 Cytidylate kinase GRP PF07172.11 GAJ46596.1 - 0.045 14.4 0.5 0.047 14.4 0.5 1.1 1 0 0 1 1 1 0 Glycine rich protein family CfAFP PF05264.11 GAJ46596.1 - 0.058 13.4 0.0 0.058 13.4 0.0 1.0 1 0 0 1 1 1 0 Choristoneura fumiferana antifreeze protein (CfAFP) DUF4148 PF13663.6 GAJ46596.1 - 0.11 12.6 0.0 0.11 12.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4148) Acetyltransf_11 PF13720.6 GAJ46597.1 - 2.6e-14 53.4 0.1 4.2e-14 52.8 0.1 1.3 1 0 0 1 1 1 1 Udp N-acetylglucosamine O-acyltransferase; Domain 2 Hexapep PF00132.24 GAJ46597.1 - 3.3e-14 51.9 30.1 0.00026 20.6 0.7 6.9 4 2 4 8 8 8 7 Bacterial transferase hexapeptide (six repeats) CheZ PF04344.13 GAJ46598.1 - 0.034 14.1 2.1 0.055 13.4 0.5 1.9 1 1 1 2 2 2 0 Chemotaxis phosphatase, CheZ DUF4925 PF16272.5 GAJ46599.1 - 0.12 11.8 2.4 0.13 11.7 2.4 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4925) HTH_23 PF13384.6 GAJ46602.1 - 0.00092 18.9 0.0 0.0014 18.3 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain HTH_psq PF05225.16 GAJ46602.1 - 0.037 13.8 0.1 0.062 13.1 0.1 1.4 1 0 0 1 1 1 0 helix-turn-helix, Psq domain Aminotran_4 PF01063.19 GAJ46603.1 - 8.5e-45 153.3 0.0 9.8e-45 153.1 0.0 1.0 1 0 0 1 1 1 1 Amino-transferase class IV SNARE_assoc PF09335.11 GAJ46604.1 - 3.4e-10 40.4 8.8 3.4e-10 40.4 8.8 2.5 1 1 2 3 3 3 1 SNARE associated Golgi protein CcmD PF04995.14 GAJ46604.1 - 0.26 11.4 0.3 0.26 11.4 0.3 2.3 2 0 0 2 2 2 0 Heme exporter protein D (CcmD) Selenoprotein_S PF06936.11 GAJ46604.1 - 0.28 11.0 1.9 0.49 10.2 0.4 2.0 2 0 0 2 2 2 0 Selenoprotein S (SelS) CrgA PF06781.12 GAJ46604.1 - 5.9 7.0 8.1 18 5.4 6.5 2.2 2 0 0 2 2 2 0 Cell division protein CrgA DUF659 PF04937.15 GAJ46605.1 - 0.034 14.0 1.2 0.062 13.2 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF 659) Cnd1 PF12717.7 GAJ46605.1 - 0.9 9.6 9.7 0.086 12.9 0.8 3.5 3 1 1 4 4 4 0 non-SMC mitotic condensation complex subunit 1 TMEM70 PF06979.12 GAJ46606.1 - 0.052 14.0 0.0 0.057 13.8 0.0 1.0 1 0 0 1 1 1 0 Assembly, mitochondrial proton-transport ATP synth complex DUF4096 PF13340.6 GAJ46606.1 - 0.16 12.2 0.0 0.17 12.1 0.0 1.1 1 0 0 1 1 1 0 Putative transposase of IS4/5 family (DUF4096) LRR_4 PF12799.7 GAJ46607.1 - 1.2e-07 32.0 5.6 0.0029 18.0 0.0 4.3 2 1 2 5 5 5 3 Leucine Rich repeats (2 copies) LRR_9 PF14580.6 GAJ46607.1 - 0.013 15.0 1.1 0.068 12.7 0.1 2.4 1 1 2 3 3 3 0 Leucine-rich repeat LRR_8 PF13855.6 GAJ46607.1 - 0.29 10.9 3.1 1.8 8.4 1.0 3.1 2 1 2 4 4 4 0 Leucine rich repeat S4 PF01479.25 GAJ46608.1 - 0.0059 16.3 0.7 0.011 15.4 0.0 1.8 2 0 0 2 2 2 1 S4 domain TyrRSs_C PF16714.5 GAJ46608.1 - 0.052 13.4 0.0 0.052 13.4 0.0 1.2 1 0 0 1 1 1 0 Tyrosyl-tRNA synthetase C-terminal domain S4_2 PF13275.6 GAJ46608.1 - 0.091 12.6 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 S4 domain KORA PF16509.5 GAJ46608.1 - 0.1 12.9 0.0 0.13 12.5 0.0 1.2 1 0 0 1 1 1 0 TrfB plasmid transcriptional repressor DDE_3 PF13358.6 GAJ46609.1 - 0.05 13.3 0.0 0.062 13.1 0.0 1.2 1 0 0 1 1 1 0 DDE superfamily endonuclease NUDIX PF00293.28 GAJ46612.1 - 2.1e-12 47.2 0.1 2.4e-12 47.0 0.1 1.1 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.6 GAJ46612.1 - 2.7e-08 33.8 0.1 4.5e-08 33.0 0.1 1.4 1 1 0 1 1 1 1 NUDIX domain FAD_binding_7 PF03441.14 GAJ46613.1 - 1.6e-81 272.6 1.5 2.4e-81 272.1 1.5 1.2 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase DNA_photolyase PF00875.18 GAJ46614.1 - 5.2e-33 114.4 0.0 6.5e-33 114.0 0.0 1.0 1 0 0 1 1 1 1 DNA photolyase DDE_3 PF13358.6 GAJ46615.1 - 7.1e-16 58.3 0.3 7.5e-16 58.2 0.3 1.1 1 0 0 1 1 1 1 DDE superfamily endonuclease tRNA_Me_trans PF03054.16 GAJ46616.1 - 2.5e-101 339.0 0.0 2.9e-101 338.8 0.0 1.0 1 0 0 1 1 1 1 tRNA methyl transferase NAD_synthase PF02540.17 GAJ46616.1 - 0.00036 19.7 0.2 0.00085 18.5 0.2 1.6 1 1 0 1 1 1 1 NAD synthase QueC PF06508.13 GAJ46616.1 - 0.0006 19.4 0.2 0.0015 18.0 0.1 1.7 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 GAJ46616.1 - 0.00091 19.0 0.0 0.0019 18.0 0.0 1.5 1 1 0 1 1 1 1 Asparagine synthase ATP_bind_3 PF01171.20 GAJ46616.1 - 0.036 13.8 0.2 0.15 11.8 0.2 2.0 1 1 0 1 1 1 0 PP-loop family ThiI PF02568.14 GAJ46616.1 - 0.039 13.5 0.0 0.11 12.0 0.0 1.8 2 0 0 2 2 2 0 Thiamine biosynthesis protein (ThiI) Arginosuc_synth PF00764.19 GAJ46616.1 - 0.055 12.7 0.0 0.079 12.2 0.0 1.2 1 0 0 1 1 1 0 Arginosuccinate synthase ATP-synt_B PF00430.18 GAJ46617.1 - 0.002 18.2 0.7 0.0046 17.1 0.8 1.7 1 1 0 1 1 1 1 ATP synthase B/B' CF(0) DUF948 PF06103.11 GAJ46617.1 - 0.028 14.7 0.1 0.1 12.9 0.0 1.9 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) DUF445 PF04286.12 GAJ46617.1 - 0.086 12.6 4.4 0.11 12.3 4.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF445) OmpH PF03938.14 GAJ46617.1 - 0.57 10.5 15.4 9.4 6.6 15.4 2.0 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) Exonuc_VII_L PF02601.15 GAJ46617.1 - 0.83 9.2 6.6 1 8.9 6.6 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit DUF745 PF05335.13 GAJ46617.1 - 4.1 7.1 7.7 6.2 6.5 7.7 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF745) YMF19 PF02326.15 GAJ46618.1 - 6.2e-08 33.3 1.2 1.3e-07 32.3 0.5 1.9 1 1 1 2 2 2 1 Plant ATP synthase F0 Plasmid_RAQPRD PF09686.10 GAJ46618.1 - 0.0061 16.7 3.0 0.0097 16.1 2.5 1.6 1 1 0 1 1 1 1 Plasmid protein of unknown function (Plasmid_RAQPRD) DUF1139 PF06599.11 GAJ46618.1 - 0.036 13.5 0.5 0.043 13.2 0.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1139) p25-alpha PF05517.12 GAJ46618.1 - 0.074 13.2 1.5 0.11 12.7 0.7 1.6 1 1 1 2 2 2 0 p25-alpha DUF883 PF05957.13 GAJ46618.1 - 0.085 13.5 3.7 0.098 13.3 2.2 1.7 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) Cas3_C PF18395.1 GAJ46618.1 - 0.22 12.0 1.8 0.81 10.2 1.8 1.8 1 1 0 1 1 1 0 Cas3 C-terminal domain Phage_Mu_Gam PF07352.12 GAJ46618.1 - 0.35 10.8 6.0 2.6 8.0 5.9 2.0 1 1 0 1 1 1 0 Bacteriophage Mu Gam like protein LCIB_C_CA PF18599.1 GAJ46618.1 - 3.8 6.7 5.9 7 5.9 1.3 1.9 1 1 1 2 2 2 0 Limiting CO2-inducible proteins B/C beta carbonyic anhydrases ATP-synt_C PF00137.21 GAJ46619.1 - 3.7e-08 33.6 8.3 4.4e-08 33.3 8.3 1.1 1 0 0 1 1 1 1 ATP synthase subunit C Wzz PF02706.15 GAJ46620.1 - 0.11 12.8 0.1 0.13 12.6 0.1 1.1 1 0 0 1 1 1 0 Chain length determinant protein DUF3537 PF12056.8 GAJ46620.1 - 0.48 9.2 2.4 0.55 9.0 2.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3537) ABC_tran PF00005.27 GAJ46622.1 - 2.5e-33 115.5 0.0 4.1e-33 114.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 GAJ46622.1 - 4e-15 55.7 0.1 1.1e-14 54.3 0.1 1.8 1 0 0 1 1 1 1 TOBE domain AAA_21 PF13304.6 GAJ46622.1 - 4e-09 36.7 0.2 0.00011 22.1 0.0 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 GAJ46622.1 - 3.8e-06 26.5 0.6 3.2e-05 23.5 0.6 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_28 PF13521.6 GAJ46622.1 - 0.0044 17.3 1.2 0.022 15.0 0.1 2.4 2 1 1 3 3 3 1 AAA domain AAA_23 PF13476.6 GAJ46622.1 - 0.011 16.2 0.0 0.021 15.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain CbiA PF01656.23 GAJ46622.1 - 0.012 15.7 0.0 0.17 11.9 0.0 2.1 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain sCache_3_2 PF17203.4 GAJ46622.1 - 0.02 15.0 0.6 0.065 13.4 0.1 2.1 2 1 0 2 2 2 0 Single cache domain 3 AAA_22 PF13401.6 GAJ46622.1 - 0.022 15.0 0.7 0.32 11.3 1.1 2.5 2 1 0 2 2 2 0 AAA domain AAA PF00004.29 GAJ46622.1 - 0.038 14.4 0.9 0.46 10.9 0.9 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) KdpD PF02702.17 GAJ46622.1 - 0.042 13.3 0.1 0.087 12.3 0.1 1.5 1 0 0 1 1 1 0 Osmosensitive K+ channel His kinase sensor domain AAA_16 PF13191.6 GAJ46622.1 - 0.061 13.7 0.1 0.13 12.6 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain cobW PF02492.19 GAJ46622.1 - 0.073 12.7 0.1 0.15 11.6 0.1 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_33 PF13671.6 GAJ46622.1 - 0.084 13.0 0.0 0.34 11.1 0.0 2.0 2 1 0 2 2 2 0 AAA domain Rad17 PF03215.15 GAJ46622.1 - 0.11 12.4 0.0 0.17 11.8 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain RsgA_GTPase PF03193.16 GAJ46622.1 - 0.12 12.2 0.0 0.3 11.0 0.0 1.6 2 0 0 2 2 2 0 RsgA GTPase NACHT PF05729.12 GAJ46622.1 - 0.27 11.1 0.8 0.63 9.9 0.3 1.8 2 0 0 2 2 2 0 NACHT domain DDE_3 PF13358.6 GAJ46623.1 - 3.9e-24 85.1 0.0 5e-24 84.7 0.0 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease Pellino PF04710.14 GAJ46623.1 - 0.11 11.1 0.0 0.15 10.7 0.0 1.1 1 0 0 1 1 1 0 Pellino HTH_33 PF13592.6 GAJ46623.1 - 0.12 12.0 0.3 0.28 10.8 0.3 1.5 1 0 0 1 1 1 0 Winged helix-turn helix DDE_Tnp_1 PF01609.21 GAJ46625.1 - 1.1e-10 41.6 0.0 1.5e-10 41.1 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain OST3_OST6 PF04756.13 GAJ46625.1 - 0.0026 17.2 0.2 0.0029 17.0 0.2 1.0 1 0 0 1 1 1 1 OST3 / OST6 family, transporter family DDE_Tnp_1_6 PF13751.6 GAJ46625.1 - 0.18 12.1 0.0 0.23 11.7 0.0 1.1 1 0 0 1 1 1 0 Transposase DDE domain SmpB PF01668.18 GAJ46626.1 - 2.8e-27 95.4 0.0 3.1e-27 95.2 0.0 1.0 1 0 0 1 1 1 1 SmpB protein Ph1570 PF09638.10 GAJ46626.1 - 0.0072 16.2 0.1 0.0084 16.0 0.1 1.1 1 0 0 1 1 1 1 Ph1570 protein NMO PF03060.15 GAJ46627.1 - 7.8e-09 35.4 0.0 1.4e-08 34.6 0.0 1.4 1 1 0 1 1 1 1 Nitronate monooxygenase N_methyl PF07963.12 GAJ46628.1 - 0.0013 18.2 0.1 0.0023 17.4 0.1 1.4 1 0 0 1 1 1 1 Prokaryotic N-terminal methylation motif MFS_1 PF07690.16 GAJ46630.1 - 4.5e-28 98.2 39.5 4.5e-28 98.2 39.5 2.0 1 1 0 2 2 2 1 Major Facilitator Superfamily OATP PF03137.20 GAJ46630.1 - 0.0025 16.2 11.1 0.015 13.6 1.0 2.8 2 1 1 3 3 3 2 Organic Anion Transporter Polypeptide (OATP) family MFS_4 PF06779.14 GAJ46630.1 - 0.14 11.4 21.1 0.51 9.6 21.1 1.8 1 1 0 1 1 1 0 Uncharacterised MFS-type transporter YbfB HTH_23 PF13384.6 GAJ46631.1 - 0.0025 17.6 0.0 0.0033 17.2 0.0 1.2 1 0 0 1 1 1 1 Homeodomain-like domain Bac_GH3_C PF18034.1 GAJ46631.1 - 0.17 11.6 0.0 0.19 11.5 0.0 1.1 1 0 0 1 1 1 0 Bacterial Glycosyl hydrolase family 3 C-terminal domain LRR_4 PF12799.7 GAJ46632.1 - 7.9e-11 42.0 8.1 1.3e-06 28.7 0.1 4.2 1 1 4 5 5 5 3 Leucine Rich repeats (2 copies) LRR_8 PF13855.6 GAJ46632.1 - 2.2e-06 27.3 1.2 0.073 12.8 0.3 2.8 2 0 0 2 2 2 2 Leucine rich repeat LRR_6 PF13516.6 GAJ46632.1 - 1.6e-05 24.6 0.0 0.28 11.4 0.0 3.1 2 0 0 2 2 2 2 Leucine Rich repeat LRR_9 PF14580.6 GAJ46632.1 - 0.0026 17.3 0.5 0.01 15.3 0.4 1.9 1 1 0 1 1 1 1 Leucine-rich repeat LRR_1 PF00560.33 GAJ46632.1 - 0.61 10.8 2.9 1.4e+02 3.7 0.0 4.0 4 0 0 4 4 4 0 Leucine Rich Repeat FNIP PF05725.12 GAJ46632.1 - 1.9 8.7 7.9 2.5 8.3 0.8 3.8 3 1 0 3 3 3 0 FNIP Repeat Aminotran_1_2 PF00155.21 GAJ46635.1 - 1e-50 173.0 0.0 1.2e-50 172.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 GAJ46635.1 - 6e-05 21.7 0.0 9.3e-05 21.1 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DUF3352 PF11832.8 GAJ46635.1 - 0.2 10.3 0.0 0.29 9.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3352) BATS PF06968.13 GAJ46636.1 - 3.3e-21 75.2 0.0 1.7e-20 72.9 0.0 2.1 2 0 0 2 2 2 1 Biotin and Thiamin Synthesis associated domain Radical_SAM PF04055.21 GAJ46636.1 - 3.3e-15 56.9 0.3 1.2e-14 55.1 0.4 1.8 2 0 0 2 2 2 1 Radical SAM superfamily DUF3795 PF12675.7 GAJ46636.1 - 0.093 13.2 1.5 0.17 12.3 1.5 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3795) Phasin_2 PF09361.10 GAJ46636.1 - 0.11 12.7 0.1 11 6.3 0.0 2.3 2 0 0 2 2 2 0 Phasin protein SecA_DEAD PF07517.14 GAJ46637.1 - 5.3e-129 429.6 2.3 5.3e-129 429.6 2.3 1.7 2 0 0 2 2 2 1 SecA DEAD-like domain SecA_SW PF07516.13 GAJ46637.1 - 3e-50 171.0 9.3 3e-50 171.0 9.3 3.2 4 0 0 4 4 4 1 SecA Wing and Scaffold domain SecA_PP_bind PF01043.20 GAJ46637.1 - 6.1e-34 117.0 2.0 2.2e-33 115.2 2.0 2.0 1 0 0 1 1 1 1 SecA preprotein cross-linking domain SEC-C PF02810.15 GAJ46637.1 - 1.3e-07 31.4 8.5 2.3e-07 30.6 8.5 1.4 1 0 0 1 1 1 1 SEC-C motif DEAD PF00270.29 GAJ46637.1 - 1.1e-05 25.3 0.1 6.2e-05 22.8 0.0 2.2 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 GAJ46637.1 - 0.012 16.0 1.2 0.046 14.1 0.0 2.7 2 0 0 2 2 2 0 Helicase conserved C-terminal domain RPW8 PF05659.11 GAJ46637.1 - 0.02 14.6 9.6 0.19 11.4 0.4 3.7 2 1 1 3 3 3 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 YbaB_DNA_bd PF02575.16 GAJ46637.1 - 1.2 9.4 4.8 28 5.0 0.3 3.2 3 0 0 3 3 3 0 YbaB/EbfC DNA-binding family HIT PF01230.23 GAJ46638.1 - 6.3e-17 62.1 0.0 7.2e-17 61.9 0.0 1.1 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 GAJ46638.1 - 1.4e-09 38.4 0.0 1.8e-09 38.1 0.0 1.1 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding SH3_2 PF07653.17 GAJ46638.1 - 0.12 12.1 0.0 0.22 11.2 0.0 1.4 1 0 0 1 1 1 0 Variant SH3 domain Foamy_BEL PF03274.14 GAJ46638.1 - 0.15 11.4 0.0 0.17 11.2 0.0 1.2 1 0 0 1 1 1 0 Foamy virus BEL 1/2 protein DUF3576 PF12100.8 GAJ46639.1 - 1.4e-18 66.8 0.0 2e-18 66.3 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF3576) NOG1 PF06858.14 GAJ46639.1 - 0.051 13.4 0.0 0.22 11.3 0.0 2.0 2 0 0 2 2 2 0 Nucleolar GTP-binding protein 1 (NOG1) tRNA-synt_1 PF00133.22 GAJ46640.1 - 1.5e-63 215.1 2.2 1.9e-22 79.3 0.5 5.9 2 1 3 5 5 5 5 tRNA synthetases class I (I, L, M and V) tRNA-synt_1_2 PF13603.6 GAJ46640.1 - 3.5e-52 176.6 0.0 5.8e-52 175.9 0.0 1.3 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1g PF09334.11 GAJ46640.1 - 1.8e-30 106.0 0.4 2e-16 59.8 0.0 4.5 3 1 1 4 4 4 4 tRNA synthetases class I (M) Anticodon_1 PF08264.13 GAJ46640.1 - 4.8e-13 49.3 0.1 1e-12 48.3 0.1 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.19 GAJ46640.1 - 1.6e-08 34.3 0.0 0.0016 17.9 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 GAJ46640.1 - 3.6e-07 29.4 0.0 0.0037 16.2 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1d PF00750.19 GAJ46640.1 - 0.0095 14.9 0.0 0.016 14.1 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (R) DNA_ligase_ZBD PF03119.16 GAJ46640.1 - 0.46 10.6 3.0 22 5.2 0.0 2.9 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain ABC_tran PF00005.27 GAJ46641.1 - 2e-45 154.7 1.8 1.1e-21 77.8 0.0 3.3 4 0 0 4 4 2 2 ABC transporter AAA_21 PF13304.6 GAJ46641.1 - 4.2e-16 59.6 6.2 0.001 18.9 0.0 4.6 4 0 0 4 4 4 4 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 GAJ46641.1 - 1.1e-13 51.2 1.4 0.0031 17.0 0.0 4.4 2 2 1 4 4 4 4 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 GAJ46641.1 - 5.9e-10 39.5 2.9 0.00022 21.5 0.0 3.2 3 1 0 3 3 2 2 AAA domain NACHT PF05729.12 GAJ46641.1 - 5.7e-09 36.1 2.0 0.0038 17.2 0.0 3.3 3 0 0 3 3 3 2 NACHT domain AAA_16 PF13191.6 GAJ46641.1 - 1.6e-08 35.1 0.3 0.0033 17.8 0.0 3.0 3 0 0 3 3 2 2 AAA ATPase domain Rad17 PF03215.15 GAJ46641.1 - 4.9e-08 33.1 0.2 0.0019 18.2 0.0 2.6 2 0 0 2 2 2 2 Rad17 P-loop domain MMR_HSR1 PF01926.23 GAJ46641.1 - 5.2e-08 33.0 0.0 0.0068 16.5 0.0 2.9 3 0 0 3 3 2 2 50S ribosome-binding GTPase AAA_29 PF13555.6 GAJ46641.1 - 1.4e-07 31.2 0.1 0.027 14.2 0.0 2.6 2 0 0 2 2 2 2 P-loop containing region of AAA domain RNA_helicase PF00910.22 GAJ46641.1 - 3e-07 30.8 0.0 0.028 14.8 0.0 2.9 3 0 0 3 3 2 2 RNA helicase RsgA_GTPase PF03193.16 GAJ46641.1 - 5e-07 29.8 0.2 0.036 14.0 0.0 2.7 3 0 0 3 3 2 2 RsgA GTPase AAA PF00004.29 GAJ46641.1 - 1.4e-06 28.8 0.0 0.077 13.4 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.6 GAJ46641.1 - 2.1e-06 28.4 11.2 0.0085 16.6 0.0 3.6 4 0 0 4 4 3 2 AAA domain AAA_18 PF13238.6 GAJ46641.1 - 4.2e-06 27.3 0.2 0.14 12.7 0.0 3.1 3 0 0 3 3 2 2 AAA domain AAA_33 PF13671.6 GAJ46641.1 - 5e-06 26.7 0.0 0.16 12.1 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_28 PF13521.6 GAJ46641.1 - 1.2e-05 25.7 0.2 0.26 11.5 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_15 PF13175.6 GAJ46641.1 - 1.6e-05 24.8 8.4 0.015 15.1 0.0 3.1 2 1 0 2 2 2 2 AAA ATPase domain AAA_14 PF13173.6 GAJ46641.1 - 2.9e-05 24.1 0.4 0.52 10.3 0.0 3.6 3 1 0 3 3 3 2 AAA domain DUF87 PF01935.17 GAJ46641.1 - 4.3e-05 23.7 1.4 1 9.4 0.1 3.6 3 0 0 3 3 3 2 Helicase HerA, central domain NB-ARC PF00931.22 GAJ46641.1 - 4.7e-05 22.7 0.0 0.16 11.1 0.0 2.5 2 0 0 2 2 2 2 NB-ARC domain ATP-synt_ab PF00006.25 GAJ46641.1 - 6.2e-05 22.8 0.0 0.08 12.6 0.0 2.3 2 0 0 2 2 2 2 ATP synthase alpha/beta family, nucleotide-binding domain ATPase_2 PF01637.18 GAJ46641.1 - 0.00031 20.7 1.6 0.46 10.3 0.0 2.7 3 0 0 3 3 2 2 ATPase domain predominantly from Archaea TsaE PF02367.17 GAJ46641.1 - 0.00034 20.6 0.7 0.08 12.9 0.0 2.7 3 0 0 3 3 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE MeaB PF03308.16 GAJ46641.1 - 0.00036 19.6 0.1 0.097 11.6 0.0 2.3 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB DUF815 PF05673.13 GAJ46641.1 - 0.00044 19.5 0.4 0.45 9.6 0.0 2.8 3 0 0 3 3 2 2 Protein of unknown function (DUF815) AAA_5 PF07728.14 GAJ46641.1 - 0.00063 19.7 0.1 1.3 9.0 0.0 2.6 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_25 PF13481.6 GAJ46641.1 - 0.00071 19.2 0.1 0.3 10.6 0.0 2.8 2 0 0 2 2 2 1 AAA domain Viral_helicase1 PF01443.18 GAJ46641.1 - 0.00082 19.2 0.0 1.1 9.0 0.0 2.5 2 0 0 2 2 2 2 Viral (Superfamily 1) RNA helicase AAA_24 PF13479.6 GAJ46641.1 - 0.00086 19.1 0.0 1.6 8.4 0.0 2.6 2 0 0 2 2 2 2 AAA domain PduV-EutP PF10662.9 GAJ46641.1 - 0.0013 18.5 0.2 0.77 9.5 0.0 2.6 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation Zeta_toxin PF06414.12 GAJ46641.1 - 0.0013 18.1 0.1 0.78 9.0 0.0 2.5 2 0 0 2 2 2 1 Zeta toxin AAA_7 PF12775.7 GAJ46641.1 - 0.0013 18.3 0.0 1.2 8.6 0.0 2.3 2 0 0 2 2 2 2 P-loop containing dynein motor region AAA_30 PF13604.6 GAJ46641.1 - 0.0015 18.3 0.0 1.3 8.7 0.0 2.6 2 0 0 2 2 2 1 AAA domain Roc PF08477.13 GAJ46641.1 - 0.0021 18.3 0.2 3.2 8.0 0.0 2.8 3 0 0 3 3 2 1 Ras of Complex, Roc, domain of DAPkinase NTPase_1 PF03266.15 GAJ46641.1 - 0.0042 17.0 1.3 3.3 7.6 0.0 3.4 4 0 0 4 4 2 1 NTPase PRK PF00485.18 GAJ46641.1 - 0.0048 16.7 0.0 1.3 8.7 0.0 2.4 2 0 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family RuvB_N PF05496.12 GAJ46641.1 - 0.0056 16.4 0.1 3.4 7.4 0.0 2.3 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain Dynamin_N PF00350.23 GAJ46641.1 - 0.0064 16.6 0.3 1.5 8.9 0.0 2.9 3 0 0 3 3 2 1 Dynamin family dNK PF01712.19 GAJ46641.1 - 0.0065 16.3 0.2 3 7.6 0.0 2.6 2 0 0 2 2 2 1 Deoxynucleoside kinase Cytidylate_kin PF02224.18 GAJ46641.1 - 0.0091 15.8 0.0 3.8 7.2 0.0 2.5 2 0 0 2 2 2 0 Cytidylate kinase KAP_NTPase PF07693.14 GAJ46641.1 - 0.0099 15.1 0.0 0.87 8.8 0.0 2.5 2 1 0 2 2 2 1 KAP family P-loop domain ABC_tran_Xtn PF12848.7 GAJ46641.1 - 0.021 14.9 1.7 8.1 6.5 0.3 2.8 2 0 0 2 2 2 0 ABC transporter Adeno_IVa2 PF02456.15 GAJ46641.1 - 0.021 13.7 0.3 0.4 9.4 0.1 2.3 2 0 0 2 2 2 0 Adenovirus IVa2 protein MobB PF03205.14 GAJ46641.1 - 0.028 14.3 0.2 8 6.4 0.0 2.5 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_17 PF13207.6 GAJ46641.1 - 0.035 14.5 0.0 7.3 7.0 0.0 2.9 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 GAJ46641.1 - 0.039 13.7 0.4 5.8 6.6 0.0 3.1 3 0 0 3 3 3 0 IstB-like ATP binding protein Ploopntkinase3 PF18751.1 GAJ46641.1 - 0.043 13.7 0.0 10 6.0 0.0 2.4 2 0 0 2 2 2 0 P-loop Nucleotide Kinase3 FeoB_N PF02421.18 GAJ46641.1 - 0.044 13.3 0.1 4.2 6.9 0.0 2.4 2 0 0 2 2 2 0 Ferrous iron transport protein B Septin PF00735.18 GAJ46641.1 - 0.051 12.8 0.0 7 5.8 0.0 2.3 2 0 0 2 2 2 0 Septin Ras PF00071.22 GAJ46641.1 - 0.063 12.9 0.0 5.3 6.6 0.0 2.3 2 0 0 2 2 2 0 Ras family Mg_chelatase PF01078.21 GAJ46641.1 - 0.11 11.8 0.0 9.4 5.5 0.0 2.5 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI ABC_tran_CTD PF16326.5 GAJ46641.1 - 0.14 12.5 7.2 0.58 10.4 7.2 2.1 1 1 0 1 1 1 0 ABC transporter C-terminal domain HipN PF18253.1 GAJ46641.1 - 0.15 11.8 0.1 1.6 8.5 0.0 2.9 3 0 0 3 3 2 0 Hsp70-interacting protein N N-terminal domain G-alpha PF00503.20 GAJ46641.1 - 0.36 9.9 4.3 2.6 7.1 0.0 3.0 3 1 0 3 3 3 0 G-protein alpha subunit AAA_25 PF13481.6 GAJ46642.1 - 4.3e-17 62.3 0.1 8.6e-17 61.3 0.1 1.5 1 1 0 1 1 1 1 AAA domain ATPase PF06745.13 GAJ46642.1 - 1.2e-15 57.5 0.1 3.8e-14 52.6 0.1 2.1 1 1 0 1 1 1 1 KaiC ChlI PF13541.6 GAJ46642.1 - 4.1e-08 33.1 0.1 6.6e-07 29.2 0.0 2.4 2 0 0 2 2 2 1 Subunit ChlI of Mg-chelatase Rubredoxin_2 PF18073.1 GAJ46642.1 - 4.4e-07 29.5 5.0 7.7e-07 28.7 5.0 1.4 1 0 0 1 1 1 1 Rubredoxin metal binding domain DnaB_C PF03796.15 GAJ46642.1 - 1.6e-06 27.7 0.1 8.8e-06 25.2 0.0 2.1 1 1 1 2 2 2 1 DnaB-like helicase C terminal domain AAA_22 PF13401.6 GAJ46642.1 - 2.5e-05 24.6 0.1 6.2e-05 23.3 0.1 1.6 1 0 0 1 1 1 1 AAA domain Lon_C PF05362.13 GAJ46642.1 - 5.7e-05 22.7 0.0 0.00011 21.8 0.0 1.5 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA_16 PF13191.6 GAJ46642.1 - 0.00018 21.9 0.1 0.00031 21.2 0.1 1.6 1 0 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 GAJ46642.1 - 0.00062 20.2 0.0 0.0014 19.1 0.0 1.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Rad51 PF08423.11 GAJ46642.1 - 0.0015 17.8 0.1 0.034 13.4 0.1 2.2 1 1 0 1 1 1 1 Rad51 NACHT PF05729.12 GAJ46642.1 - 0.0036 17.2 0.0 0.0083 16.1 0.0 1.6 1 0 0 1 1 1 1 NACHT domain TIP49 PF06068.13 GAJ46642.1 - 0.0049 16.1 0.1 0.0088 15.3 0.1 1.3 1 0 0 1 1 1 1 TIP49 P-loop domain MCM PF00493.23 GAJ46642.1 - 0.005 16.0 0.0 0.014 14.5 0.0 1.7 1 1 0 1 1 1 1 MCM P-loop domain AAA_19 PF13245.6 GAJ46642.1 - 0.0051 17.2 0.2 0.0094 16.3 0.2 1.4 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 GAJ46642.1 - 0.0076 16.2 0.0 0.019 14.9 0.0 1.7 2 0 0 2 2 1 1 NTPase AAA_24 PF13479.6 GAJ46642.1 - 0.0087 15.8 0.0 0.058 13.1 0.0 2.3 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 GAJ46642.1 - 0.01 15.6 0.1 0.037 13.8 0.0 2.0 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_5 PF07728.14 GAJ46642.1 - 0.016 15.2 0.0 0.029 14.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_30 PF13604.6 GAJ46642.1 - 0.044 13.5 0.2 0.078 12.7 0.2 1.5 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.6 GAJ46642.1 - 0.049 13.7 0.0 0.1 12.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 GAJ46642.1 - 0.07 13.0 0.0 0.14 12.0 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase GvpD PF07088.11 GAJ46642.1 - 0.11 11.1 0.0 0.19 10.3 0.0 1.4 1 1 0 1 1 1 0 GvpD gas vesicle protein TPP_enzyme_N PF02776.18 GAJ46642.1 - 0.11 12.0 0.0 0.24 11.0 0.0 1.5 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CbiA PF01656.23 GAJ46642.1 - 0.12 12.5 0.0 0.22 11.6 0.0 1.5 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain ABC_tran PF00005.27 GAJ46642.1 - 0.13 12.8 0.0 0.3 11.6 0.0 1.6 1 0 0 1 1 1 0 ABC transporter Zeta_toxin PF06414.12 GAJ46642.1 - 0.14 11.5 0.0 0.29 10.4 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin GrpE PF01025.19 GAJ46643.1 - 9.8e-39 132.7 2.2 1.1e-38 132.5 2.2 1.0 1 0 0 1 1 1 1 GrpE DUF2397 PF09660.10 GAJ46643.1 - 0.0023 16.9 0.1 0.0023 16.9 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2397) Sds3 PF08598.11 GAJ46643.1 - 0.0098 15.9 0.6 0.01 15.8 0.6 1.2 1 0 0 1 1 1 1 Sds3-like Titin_Ig-rpts PF06582.12 GAJ46643.1 - 0.13 12.2 0.4 0.22 11.5 0.4 1.5 1 0 0 1 1 1 0 Titin repeat DUF4337 PF14235.6 GAJ46643.1 - 0.37 10.9 3.1 0.52 10.4 3.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4337) HrcA PF01628.21 GAJ46644.1 - 2.2e-26 93.1 0.0 3.2e-26 92.6 0.0 1.2 1 0 0 1 1 1 1 HrcA protein C terminal domain Fe_dep_repress PF01325.19 GAJ46644.1 - 0.0015 18.7 0.0 0.004 17.3 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HrcA_DNA-bdg PF03444.15 GAJ46644.1 - 0.0024 17.5 0.0 0.0045 16.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Rrf2 PF02082.20 GAJ46644.1 - 0.012 15.9 0.0 0.035 14.5 0.0 1.7 2 0 0 2 2 2 0 Transcriptional regulator Ndc80_HEC PF03801.13 GAJ46644.1 - 0.052 13.2 0.0 0.09 12.4 0.0 1.3 1 0 0 1 1 1 0 HEC/Ndc80p family FMN_bind PF04205.14 GAJ46644.1 - 0.053 14.1 0.0 0.11 13.1 0.0 1.5 1 0 0 1 1 1 0 FMN-binding domain HTH_27 PF13463.6 GAJ46644.1 - 0.082 13.4 0.0 0.23 12.0 0.0 1.8 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 GAJ46644.1 - 0.11 12.4 0.1 0.37 10.8 0.0 1.9 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_20 PF12840.7 GAJ46644.1 - 0.13 12.3 0.1 0.58 10.3 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain Peptidase_S11 PF00768.20 GAJ46645.1 - 3.8e-44 150.9 0.0 5e-44 150.5 0.0 1.1 1 0 0 1 1 1 1 D-alanyl-D-alanine carboxypeptidase Beta-lactamase2 PF13354.6 GAJ46645.1 - 6.9e-10 38.9 0.0 8.7e-10 38.5 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase enzyme family Beta-lactamase PF00144.24 GAJ46645.1 - 0.04 13.2 0.0 3.7 6.7 0.0 2.6 2 1 0 2 2 2 0 Beta-lactamase SMC_N PF02463.19 GAJ46646.1 - 1.2e-16 60.8 0.0 1.1e-15 57.7 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 GAJ46646.1 - 5.4e-10 40.1 0.0 8.7e-10 39.4 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 GAJ46646.1 - 1.1e-09 38.5 0.0 1.1e-07 31.9 0.0 2.1 1 1 1 2 2 2 1 AAA ATPase domain AAA_21 PF13304.6 GAJ46646.1 - 1.4e-06 28.3 0.1 3.7e-06 27.0 0.0 1.8 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system SbcCD_C PF13558.6 GAJ46646.1 - 4.8e-05 23.5 0.0 8.6e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit NACHT PF05729.12 GAJ46646.1 - 0.00017 21.5 0.1 0.31 10.9 0.1 2.6 2 0 0 2 2 2 2 NACHT domain AAA_29 PF13555.6 GAJ46646.1 - 0.00062 19.5 0.0 0.0021 17.7 0.0 1.9 2 0 0 2 2 2 1 P-loop containing region of AAA domain ABC_tran PF00005.27 GAJ46646.1 - 0.0014 19.2 0.1 0.013 16.0 0.0 2.2 2 0 0 2 2 2 1 ABC transporter DUF2813 PF11398.8 GAJ46646.1 - 0.016 14.5 2.4 0.12 11.6 0.1 2.6 2 1 0 3 3 3 0 Protein of unknown function (DUF2813) AAA_22 PF13401.6 GAJ46646.1 - 0.041 14.2 0.0 0.81 10.0 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_27 PF13514.6 GAJ46646.1 - 0.072 12.7 0.0 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 GAJ46646.1 - 0.14 11.9 0.0 1.1 8.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain OmpA PF00691.20 GAJ46647.1 - 6.7e-14 52.0 0.0 2.9e-13 50.0 0.0 2.0 2 0 0 2 2 2 1 OmpA family O-antigen_lig PF13425.6 GAJ46647.1 - 0.25 10.1 1.6 0.34 9.7 1.6 1.2 1 0 0 1 1 1 0 O-antigen ligase like membrane protein DUF5070 PF16802.5 GAJ46647.1 - 0.46 10.5 6.4 0.55 10.2 1.6 2.4 1 1 0 2 2 2 0 Domain of unknown function (DUF5070) Exonuc_VII_L PF02601.15 GAJ46647.1 - 1.3 8.6 6.9 1.9 8.0 6.9 1.3 1 0 0 1 1 1 0 Exonuclease VII, large subunit Lectin_N PF03954.14 GAJ46647.1 - 2.1 8.1 9.6 0.12 12.2 3.9 1.8 2 0 0 2 2 2 0 Hepatic lectin, N-terminal domain TipAS PF07739.13 GAJ46647.1 - 2.6 8.6 9.7 12 6.5 5.8 2.2 1 1 1 2 2 2 0 TipAS antibiotic-recognition domain DUF5401 PF17380.2 GAJ46647.1 - 4.6 5.2 13.6 5.9 4.8 13.6 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5401) DUF503 PF04456.12 GAJ46649.1 - 0.054 13.4 0.1 0.12 12.2 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF503) Transgly PF00912.22 GAJ46651.1 - 1.8e-57 193.7 0.0 2.9e-57 193.0 0.0 1.3 1 0 0 1 1 1 1 Transglycosylase Transpeptidase PF00905.22 GAJ46651.1 - 8.6e-30 104.0 0.0 1.9e-29 102.8 0.0 1.5 1 1 0 1 1 1 1 Penicillin binding protein transpeptidase domain CDC45 PF02724.14 GAJ46651.1 - 4.6e-05 21.9 12.9 6.7e-05 21.4 12.9 1.2 1 0 0 1 1 1 1 CDC45-like protein CNDH2_C PF16858.5 GAJ46651.1 - 0.00027 20.9 5.2 0.00044 20.2 5.2 1.3 1 0 0 1 1 1 1 Condensin II complex subunit CAP-H2 or CNDH2, C-term SGT1 PF07093.11 GAJ46651.1 - 0.0091 14.5 5.8 0.016 13.7 5.8 1.4 1 0 0 1 1 1 1 SGT1 protein TrmB PF01978.19 GAJ46651.1 - 0.016 15.1 0.0 0.037 13.9 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Mpp10 PF04006.12 GAJ46651.1 - 0.032 12.7 24.3 0.049 12.1 24.3 1.2 1 0 0 1 1 1 0 Mpp10 protein SAPS PF04499.15 GAJ46651.1 - 0.04 12.7 5.2 0.055 12.3 5.2 1.2 1 0 0 1 1 1 0 SIT4 phosphatase-associated protein CtsR_C PF17727.1 GAJ46651.1 - 0.042 14.0 0.1 0.18 12.0 0.1 2.1 2 0 0 2 2 2 0 CtsR C-terminal dimerization domain Nop14 PF04147.12 GAJ46651.1 - 0.058 11.6 29.0 0.087 11.0 29.0 1.1 1 0 0 1 1 1 0 Nop14-like family SDA1 PF05285.12 GAJ46651.1 - 0.47 9.8 31.7 0.76 9.1 31.7 1.2 1 0 0 1 1 1 0 SDA1 BUD22 PF09073.10 GAJ46651.1 - 0.9 8.8 27.2 1.6 7.9 27.2 1.3 1 0 0 1 1 1 0 BUD22 Apt1 PF10351.9 GAJ46651.1 - 1.1 8.0 9.3 2.3 7.0 9.3 1.5 1 0 0 1 1 1 0 Golgi-body localisation protein domain SURF2 PF05477.11 GAJ46651.1 - 1.9 8.1 22.6 3.3 7.3 22.6 1.3 1 0 0 1 1 1 0 Surfeit locus protein 2 (SURF2) TFIIF_alpha PF05793.12 GAJ46651.1 - 2.5 6.6 31.2 4.1 5.9 31.2 1.2 1 0 0 1 1 1 0 Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) RNA_pol_3_Rpc31 PF11705.8 GAJ46651.1 - 3.4 7.9 34.6 7 6.8 34.6 1.4 1 0 0 1 1 1 0 DNA-directed RNA polymerase III subunit Rpc31 DNA_pol_phi PF04931.13 GAJ46651.1 - 3.5 5.6 40.6 1.3 7.0 37.9 1.5 2 0 0 2 2 2 0 DNA polymerase phi Vfa1 PF08432.10 GAJ46651.1 - 4 7.7 21.3 11 6.3 21.3 1.7 1 0 0 1 1 1 0 AAA-ATPase Vps4-associated protein 1 FAM60A PF15396.6 GAJ46651.1 - 6.4 6.7 8.4 14 5.6 8.4 1.5 1 0 0 1 1 1 0 Protein Family FAM60A Nop53 PF07767.11 GAJ46651.1 - 6.5 6.0 27.0 13 5.0 27.0 1.4 1 0 0 1 1 1 0 Nop53 (60S ribosomal biogenesis) DUF4746 PF15928.5 GAJ46651.1 - 7.3 5.9 17.1 14 4.9 17.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4746) tRNA_synt_2f PF02092.17 GAJ46652.1 - 7.2e-126 421.2 0.0 9.2e-126 420.9 0.0 1.1 1 0 0 1 1 1 1 Glycyl-tRNA synthetase beta subunit Peptidase_S24 PF00717.23 GAJ46654.1 - 4.4e-18 65.0 0.0 9.4e-18 63.9 0.0 1.6 1 0 0 1 1 1 1 Peptidase S24-like Peptidase_S26 PF10502.9 GAJ46654.1 - 0.00031 20.6 0.1 0.11 12.3 0.0 2.9 2 1 0 2 2 2 2 Signal peptidase, peptidase S26 UvrC_HhH_N PF08459.11 GAJ46655.1 - 2.5e-35 121.6 0.0 4.2e-35 120.9 0.0 1.4 1 0 0 1 1 1 1 UvrC Helix-hairpin-helix N-terminal HHH_5 PF14520.6 GAJ46655.1 - 1.2e-08 35.5 0.2 4.1e-08 33.7 0.0 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix domain GIY-YIG PF01541.24 GAJ46655.1 - 2e-06 28.0 0.0 9.2e-06 25.9 0.0 2.1 2 0 0 2 2 2 1 GIY-YIG catalytic domain HHH_2 PF12826.7 GAJ46655.1 - 2.3e-06 27.6 0.0 7.6e-06 25.9 0.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH PF00633.23 GAJ46655.1 - 4e-06 26.4 0.0 0.0073 16.1 0.0 2.7 2 0 0 2 2 2 2 Helix-hairpin-helix motif UVR PF02151.19 GAJ46655.1 - 0.00018 21.2 0.3 0.00046 19.8 0.3 1.7 1 0 0 1 1 1 1 UvrB/uvrC motif HHH_8 PF14716.6 GAJ46655.1 - 0.011 16.1 1.1 0.53 10.7 0.0 3.2 3 1 0 3 3 3 0 Helix-hairpin-helix domain HHH_3 PF12836.7 GAJ46655.1 - 0.012 15.9 0.2 0.29 11.4 0.0 2.6 2 0 0 2 2 2 0 Helix-hairpin-helix motif LcrG PF07216.12 GAJ46655.1 - 0.11 12.4 0.6 0.34 10.8 0.1 2.0 2 0 0 2 2 2 0 LcrG protein TatD_DNase PF01026.21 GAJ46656.1 - 1.8e-64 217.5 0.0 2.3e-64 217.3 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase Proton_antipo_M PF00361.20 GAJ46657.1 - 4.1e-41 141.1 12.0 4.1e-41 141.1 12.0 2.3 3 0 0 3 3 3 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 GAJ46657.1 - 2.8e-09 36.9 1.2 2.8e-09 36.9 1.2 2.8 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DUF2309 PF10070.9 GAJ46658.1 - 6.5e-18 64.5 0.2 1.4e-08 33.6 0.1 2.0 1 1 1 2 2 2 2 Uncharacterized protein conserved in bacteria (DUF2309) DUF2309 PF10070.9 GAJ46659.1 - 1.7e-41 142.4 0.0 2e-41 142.2 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2309) DUF2309 PF10070.9 GAJ46660.1 - 1.4e-123 413.8 0.0 1.6e-123 413.6 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2309) Ada3 PF10198.9 GAJ46660.1 - 0.03 14.5 0.8 0.047 13.8 0.8 1.2 1 0 0 1 1 1 0 Histone acetyltransferases subunit 3 DDE_Tnp_IS1 PF03400.13 GAJ46662.1 - 1.1e-05 25.8 0.1 1.6e-05 25.3 0.1 1.2 1 0 0 1 1 1 1 IS1 transposase HTH_23 PF13384.6 GAJ46662.1 - 0.001 18.8 0.0 0.002 17.9 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_38 PF13936.6 GAJ46662.1 - 0.014 15.1 0.0 0.025 14.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_psq PF05225.16 GAJ46662.1 - 0.057 13.2 0.1 0.14 11.9 0.1 1.6 2 0 0 2 2 2 0 helix-turn-helix, Psq domain HTH_7 PF02796.15 GAJ46662.1 - 0.064 13.3 0.0 0.14 12.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase Ribosomal_S20p PF01649.18 GAJ46663.1 - 1.2e-15 57.9 5.9 1.3e-15 57.8 5.9 1.0 1 0 0 1 1 1 1 Ribosomal protein S20 Bac_DnaA PF00308.18 GAJ46664.1 - 2e-80 269.8 0.1 3.4e-80 269.0 0.1 1.4 1 0 0 1 1 1 1 Bacterial dnaA protein Bac_DnaA_C PF08299.11 GAJ46664.1 - 2.6e-28 97.8 0.0 5.8e-28 96.7 0.0 1.6 1 0 0 1 1 1 1 Bacterial dnaA protein helix-turn-helix DnaA_N PF11638.8 GAJ46664.1 - 6.5e-13 48.2 0.3 2.9e-12 46.2 0.1 2.2 2 0 0 2 2 2 1 DnaA N-terminal domain IstB_IS21 PF01695.17 GAJ46664.1 - 1.4e-09 37.9 0.0 2.8e-09 37.0 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA PF00004.29 GAJ46664.1 - 5.8e-08 33.2 0.0 5.3e-07 30.1 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AFG1_ATPase PF03969.16 GAJ46664.1 - 7.5e-07 28.4 0.6 0.018 14.0 0.1 2.2 1 1 1 2 2 2 2 AFG1-like ATPase AAA_14 PF13173.6 GAJ46664.1 - 9.6e-06 25.7 0.0 2.7e-05 24.2 0.0 1.7 1 0 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 GAJ46664.1 - 1.6e-05 24.9 1.7 0.00012 22.1 0.4 2.4 2 1 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_22 PF13401.6 GAJ46664.1 - 0.00013 22.2 0.5 0.79 10.0 0.0 3.0 2 1 1 3 3 3 2 AAA domain RNA_helicase PF00910.22 GAJ46664.1 - 0.00019 21.8 0.1 0.0017 18.7 0.1 2.6 2 1 0 2 2 1 1 RNA helicase NACHT PF05729.12 GAJ46664.1 - 0.00045 20.2 0.0 0.0034 17.3 0.0 2.3 2 0 0 2 2 2 1 NACHT domain AAA_5 PF07728.14 GAJ46664.1 - 0.0013 18.8 0.0 0.0024 17.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 GAJ46664.1 - 0.0022 18.4 0.1 0.019 15.4 0.0 2.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_19 PF13245.6 GAJ46664.1 - 0.024 15.0 0.1 0.73 10.2 0.0 2.9 2 2 1 3 3 3 0 AAA domain TsaE PF02367.17 GAJ46664.1 - 0.025 14.6 0.0 0.055 13.5 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Eaf7 PF07904.13 GAJ46664.1 - 0.045 14.1 1.4 1.8 9.0 0.0 2.9 3 0 0 3 3 3 0 Chromatin modification-related protein EAF7 AFP_2 PF18815.1 GAJ46664.1 - 0.062 13.6 0.4 0.16 12.2 0.0 1.8 2 0 0 2 2 2 0 Bacterial antifreeze protein repeat AAA_25 PF13481.6 GAJ46664.1 - 0.066 12.8 0.0 0.75 9.3 0.0 2.0 1 1 1 2 2 2 0 AAA domain PhoH PF02562.16 GAJ46664.1 - 0.081 12.4 0.0 0.28 10.6 0.0 1.8 2 0 0 2 2 2 0 PhoH-like protein AAA_7 PF12775.7 GAJ46664.1 - 0.12 11.8 0.0 0.23 11.0 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region DNA_pol3_beta PF00712.19 GAJ46665.1 - 5.7e-24 84.6 0.2 3.8e-18 65.7 0.0 3.3 2 1 0 3 3 3 2 DNA polymerase III beta subunit, N-terminal domain DNA_pol3_beta_2 PF02767.16 GAJ46665.1 - 3.6e-19 69.1 0.1 2.9e-17 63.0 0.0 2.5 3 0 0 3 3 3 1 DNA polymerase III beta subunit, central domain DNA_pol3_beta_3 PF02768.15 GAJ46665.1 - 9.6e-18 64.2 0.1 5.9e-17 61.6 0.0 2.3 2 0 0 2 2 2 1 DNA polymerase III beta subunit, C-terminal domain PS_Dcarbxylase PF02666.15 GAJ46666.1 - 3.5e-26 92.0 0.0 4.3e-25 88.4 0.0 2.0 1 1 0 1 1 1 1 Phosphatidylserine decarboxylase Proteasome_A_N PF10584.9 GAJ46666.1 - 0.086 12.5 0.0 0.18 11.5 0.0 1.5 1 0 0 1 1 1 0 Proteasome subunit A N-terminal signature Thioredoxin PF00085.20 GAJ46667.1 - 2.1e-19 69.4 0.0 2.3e-19 69.3 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 GAJ46667.1 - 5.2e-08 33.3 0.0 1.4e-06 28.7 0.0 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.6 GAJ46667.1 - 6.2e-08 32.9 0.1 3.2e-05 24.2 0.0 2.2 1 1 1 2 2 2 2 Thioredoxin-like TraF PF13728.6 GAJ46667.1 - 7.6e-07 29.2 0.0 9.4e-07 28.9 0.0 1.1 1 0 0 1 1 1 1 F plasmid transfer operon protein Redoxin PF08534.10 GAJ46667.1 - 3.5e-05 23.6 0.0 4.6e-05 23.2 0.0 1.3 1 1 0 1 1 1 1 Redoxin AhpC-TSA PF00578.21 GAJ46667.1 - 0.00051 19.9 0.0 0.00057 19.8 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Thioredoxin_9 PF14595.6 GAJ46667.1 - 0.00052 19.8 0.1 0.00068 19.4 0.1 1.2 1 0 0 1 1 1 1 Thioredoxin OST3_OST6 PF04756.13 GAJ46667.1 - 0.00081 18.8 0.0 0.00091 18.7 0.0 1.1 1 0 0 1 1 1 1 OST3 / OST6 family, transporter family Thioredoxin_7 PF13899.6 GAJ46667.1 - 0.003 17.7 0.1 0.0045 17.1 0.1 1.5 1 1 0 1 1 1 1 Thioredoxin-like KaiB PF07689.12 GAJ46667.1 - 0.0042 16.8 0.1 0.0054 16.4 0.1 1.3 1 0 0 1 1 1 1 KaiB domain DUF836 PF05768.14 GAJ46667.1 - 0.0049 17.2 0.0 0.006 17.0 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Thioredoxin_3 PF13192.6 GAJ46667.1 - 0.012 15.6 0.0 0.017 15.2 0.0 1.4 1 1 0 1 1 1 0 Thioredoxin domain Glutaredoxin PF00462.24 GAJ46667.1 - 0.017 15.3 0.0 0.04 14.1 0.0 1.7 1 1 1 2 2 2 0 Glutaredoxin CDC24_OB2 PF17245.2 GAJ46667.1 - 0.036 14.6 0.0 0.042 14.4 0.0 1.2 1 0 0 1 1 1 0 Cell division control protein 24, OB domain 2 TrbC_Ftype PF09673.10 GAJ46667.1 - 0.052 13.6 0.0 0.065 13.3 0.0 1.3 1 0 0 1 1 1 0 Type-F conjugative transfer system pilin assembly protein Cu-oxidase_4 PF02578.15 GAJ46668.1 - 1.6e-39 135.9 0.0 1.9e-39 135.6 0.0 1.0 1 0 0 1 1 1 1 Multi-copper polyphenol oxidoreductase laccase DUF3785 PF12653.7 GAJ46668.1 - 0.27 11.3 2.9 0.45 10.6 2.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3785) DDE_Tnp_4 PF13359.6 GAJ46669.1 - 0.017 14.8 0.0 0.021 14.5 0.0 1.1 1 0 0 1 1 1 0 DDE superfamily endonuclease PRP3 PF08572.10 GAJ46671.1 - 0.032 14.0 2.0 0.033 13.9 2.0 1.0 1 0 0 1 1 1 0 pre-mRNA processing factor 3 (PRP3) RecA PF00154.21 GAJ46672.1 - 1.8e-135 450.5 1.5 2.1e-135 450.3 1.5 1.1 1 0 0 1 1 1 1 recA bacterial DNA recombination protein Rad51 PF08423.11 GAJ46672.1 - 2.1e-13 50.1 0.7 9.6e-13 48.0 0.7 1.8 1 1 0 1 1 1 1 Rad51 ATPase PF06745.13 GAJ46672.1 - 3.1e-09 36.5 2.7 3.7e-06 26.4 1.8 3.6 2 1 0 2 2 2 1 KaiC ATPase_2 PF01637.18 GAJ46672.1 - 8.3e-07 29.2 0.0 1.8e-06 28.0 0.0 1.5 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_24 PF13479.6 GAJ46672.1 - 1.6e-05 24.7 0.0 4.1e-05 23.4 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 GAJ46672.1 - 0.00036 21.0 0.0 0.00075 19.9 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.27 GAJ46672.1 - 0.011 16.3 0.0 0.026 15.1 0.0 1.6 1 1 0 1 1 1 0 ABC transporter AAA_35 PF14516.6 GAJ46672.1 - 0.019 13.8 0.0 0.031 13.1 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain AAA_14 PF13173.6 GAJ46672.1 - 0.037 14.1 0.0 0.16 12.0 0.0 2.1 1 1 1 2 2 2 0 AAA domain AAA_16 PF13191.6 GAJ46672.1 - 0.043 14.2 0.0 0.083 13.3 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain AAA_25 PF13481.6 GAJ46672.1 - 0.067 12.8 0.1 0.82 9.2 0.1 2.3 1 1 0 1 1 1 0 AAA domain CobU PF02283.16 GAJ46672.1 - 0.085 12.4 0.0 0.15 11.6 0.0 1.4 1 0 0 1 1 1 0 Cobinamide kinase / cobinamide phosphate guanyltransferase PAXNEB PF05625.11 GAJ46672.1 - 0.098 11.8 0.4 0.16 11.1 0.4 1.3 1 0 0 1 1 1 0 PAXNEB protein AAA_22 PF13401.6 GAJ46672.1 - 0.14 12.4 0.0 0.34 11.2 0.0 1.7 1 1 0 1 1 1 0 AAA domain tRNA-synt_1c PF00749.21 GAJ46673.1 - 1.6e-79 267.1 0.0 2.4e-79 266.5 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain ZnuA PF01297.17 GAJ46674.1 - 1.5e-28 99.9 0.0 1.9e-28 99.6 0.0 1.1 1 0 0 1 1 1 1 Zinc-uptake complex component A periplasmic ABC-3 PF00950.17 GAJ46674.1 - 1.6e-25 90.1 12.9 2e-25 89.8 12.9 1.1 1 0 0 1 1 1 1 ABC 3 transport family SfsA PF03749.13 GAJ46675.1 - 6.8e-41 139.4 0.0 1.1e-40 138.7 0.0 1.4 1 0 0 1 1 1 1 Sugar fermentation stimulation protein RE domain SfsA_N PF17746.1 GAJ46675.1 - 2.4e-14 53.2 0.0 8.2e-14 51.5 0.0 1.8 2 0 0 2 2 2 1 SfsA N-terminal OB domain PDDEXK_1 PF12705.7 GAJ46676.1 - 2.6e-15 57.0 0.0 6.5e-15 55.7 0.0 1.7 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily APP_E2 PF12925.7 GAJ46677.1 - 0.35 10.6 6.6 0.26 11.0 1.1 2.3 2 1 0 2 2 2 0 E2 domain of amyloid precursor protein Rsbr_N PF08678.10 GAJ46677.1 - 1.2 9.2 7.4 5.4 7.1 3.5 3.0 2 2 0 2 2 2 0 Rsbr N terminal Hat1_N PF10394.9 GAJ46677.1 - 3 8.1 9.3 2.2 8.5 0.2 2.8 1 1 2 3 3 3 0 Histone acetyl transferase HAT1 N-terminus BLYB PF05289.11 GAJ46677.1 - 7.2 6.9 12.6 1.3 9.3 5.7 2.8 2 1 1 3 3 3 0 Borrelia hemolysin accessory protein Cas_DxTHG PF09455.10 GAJ46677.1 - 9.9 5.6 15.3 18 4.8 15.3 1.5 1 1 0 1 1 1 0 CRISPR-associated (Cas) DxTHG family DUF5347 PF17282.2 GAJ46678.1 - 1.6 9.0 14.6 0.31 11.4 0.6 4.6 4 1 1 5 5 5 0 Family of unknown function (DUF5347) Atg14 PF10186.9 GAJ46678.1 - 9.6 5.2 11.5 0.032 13.3 1.1 2.1 3 0 0 3 3 3 0 Vacuolar sorting 38 and autophagy-related subunit 14 DUF4600 PF15372.6 GAJ46681.1 - 0.03 14.7 18.3 0.041 14.3 3.7 2.3 1 1 0 2 2 2 0 Domain of unknown function (DUF4600) CENP-F_leu_zip PF10473.9 GAJ46681.1 - 0.049 13.7 16.7 0.45 10.5 2.7 2.0 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 V-SNARE PF05008.15 GAJ46681.1 - 0.05 14.0 12.7 0.43 11.0 3.8 2.4 2 0 0 2 2 2 0 Vesicle transport v-SNARE protein N-terminus GAS PF13851.6 GAJ46681.1 - 0.071 12.5 21.3 0.072 12.4 4.0 2.1 2 0 0 2 2 2 0 Growth-arrest specific micro-tubule binding Fib_alpha PF08702.10 GAJ46681.1 - 0.26 11.5 16.8 1.6 8.9 15.1 2.0 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family Rootletin PF15035.6 GAJ46681.1 - 0.3 11.1 13.7 0.62 10.1 13.7 1.5 1 1 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion Elf4 PF07011.11 GAJ46681.1 - 1.1 9.3 16.1 4.4 7.3 9.9 3.4 3 1 0 3 3 3 0 Early Flowering 4 domain Rpp20 PF12328.8 GAJ46681.1 - 2.8 7.9 9.9 0.77 9.7 4.1 2.0 2 0 0 2 2 2 0 Rpp20 subunit of nuclear RNase MRP and P MRP-S23 PF10484.9 GAJ46681.1 - 3.1 8.1 10.8 0.15 12.3 2.1 2.0 1 1 1 2 2 2 0 Mitochondrial ribosomal protein S23 DUF16 PF01519.16 GAJ46681.1 - 4.8 7.7 14.6 3.5 8.2 4.2 2.1 2 0 0 2 2 2 0 Protein of unknown function DUF16 THOC7 PF05615.13 GAJ46681.1 - 5.3 7.3 15.9 2.2 8.5 9.0 2.2 1 1 1 2 2 2 0 Tho complex subunit 7 DUF2570 PF10828.8 GAJ46681.1 - 8 6.3 16.8 0.43 10.4 6.7 2.2 1 1 0 2 2 2 0 Protein of unknown function (DUF2570) APG6_N PF17675.1 GAJ46681.1 - 8.8 6.9 16.6 25 5.4 12.0 2.1 1 1 1 2 2 2 0 Apg6 coiled-coil region MCC-bdg_PDZ PF10506.9 GAJ46682.1 - 0.02 14.9 5.3 2 8.5 0.1 3.4 2 1 1 3 3 3 0 PDZ domain of MCC-2 bdg protein for Usher syndrome U3snoRNP10 PF12397.8 GAJ46682.1 - 0.88 9.9 5.2 1 9.7 0.1 3.0 2 1 0 2 2 2 0 U3 small nucleolar RNA-associated protein 10 GvpK PF05121.12 GAJ46682.1 - 4.1 7.5 9.6 0.29 11.2 0.5 2.9 2 1 0 2 2 2 0 Gas vesicle protein K YafQ_toxin PF15738.5 GAJ46682.1 - 4.9 7.5 16.8 3.3 8.1 0.5 3.6 3 2 1 4 4 4 0 Bacterial toxin of type II toxin-antitoxin system, YafQ SlyX PF04102.12 GAJ46682.1 - 9.3 7.0 14.7 20 5.9 0.6 4.1 1 1 2 3 3 3 0 SlyX YTV PF07639.11 GAJ46684.1 - 0.074 13.1 6.3 0.11 12.6 5.4 1.8 1 1 0 1 1 1 0 YTV Inhibitor_I24 PF10465.9 GAJ46684.1 - 0.11 12.4 0.7 0.15 12.0 0.7 1.3 1 0 0 1 1 1 0 PinA peptidase inhibitor MKRN1_C PF15815.5 GAJ46684.1 - 2.3 8.7 3.7 34 4.9 0.1 2.6 2 0 0 2 2 2 0 E3 ubiquitin-protein ligase makorin-1, C-terminal Presenilin PF01080.17 GAJ46684.1 - 6.6 5.4 11.7 7.1 5.3 11.7 1.0 1 0 0 1 1 1 0 Presenilin Fib_alpha PF08702.10 GAJ46685.1 - 0.0017 18.6 19.6 0.0017 18.6 19.6 8.5 1 1 7 9 9 9 3 Fibrinogen alpha/beta chain family DUF1599 PF07659.11 GAJ46685.1 - 0.088 13.3 2.1 0.9 10.0 0.2 3.9 2 0 0 2 2 2 0 Nucleotide modification associated domain 1 B2 PF11473.8 GAJ46685.1 - 1.9 8.3 10.2 0.66 9.8 0.2 4.6 3 1 2 5 5 5 0 RNA binding protein B2 MAD PF05557.13 GAJ46686.1 - 0.0014 17.1 32.8 0.029 12.8 29.7 2.4 1 1 1 2 2 2 1 Mitotic checkpoint protein FRB_dom PF08771.11 GAJ46686.1 - 0.036 14.5 0.0 0.036 14.5 0.0 4.5 4 1 0 4 4 4 0 FKBP12-rapamycin binding domain FPP PF05911.11 GAJ46686.1 - 0.44 8.7 43.3 0.046 11.9 36.3 2.2 2 1 0 2 2 2 0 Filament-like plant protein, long coiled-coil DUF641 PF04859.12 GAJ46686.1 - 2.9 8.2 21.3 0.7 10.2 1.4 4.2 1 1 1 3 3 3 0 Plant protein of unknown function (DUF641) HAUS-augmin3 PF14932.6 GAJ46686.1 - 3.2 7.3 29.7 6.2 6.3 16.4 2.8 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 3 DUF3817 PF12823.7 GAJ46687.1 - 0.42 11.5 6.4 0.62 10.9 6.4 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF3817) Antimicrobial21 PF14861.6 GAJ46688.1 - 1.7 8.4 5.8 0.24 11.1 0.7 2.2 2 1 0 2 2 2 0 Plant antimicrobial peptide SpoU_methylase PF00588.19 GAJ46689.1 - 8e-24 84.4 0.0 1.5e-23 83.6 0.0 1.4 1 0 0 1 1 1 1 SpoU rRNA Methylase family SpoU_sub_bind PF08032.12 GAJ46689.1 - 2.1e-05 24.7 0.0 0.027 14.7 0.0 2.4 2 0 0 2 2 2 2 RNA 2'-O ribose methyltransferase substrate binding RNase_H PF00075.24 GAJ46690.1 - 1.2e-39 135.7 0.1 2e-39 135.0 0.1 1.3 1 0 0 1 1 1 1 RNase H SH3_4 PF06347.13 GAJ46690.1 - 3.2e-18 65.3 7.4 2.8e-10 39.9 1.5 2.9 3 0 0 3 3 3 2 Bacterial SH3 domain SH3_3 PF08239.11 GAJ46690.1 - 2.6e-06 27.6 6.2 0.027 14.7 1.2 3.3 3 0 0 3 3 3 2 Bacterial SH3 domain RVT_3 PF13456.6 GAJ46690.1 - 0.0019 18.0 0.2 0.013 15.3 0.2 2.1 1 1 0 1 1 1 1 Reverse transcriptase-like SH3_16 PF18348.1 GAJ46690.1 - 0.0056 16.4 1.0 0.018 14.8 0.1 2.3 2 0 0 2 2 2 1 Bacterial dipeptidyl-peptidase Sh3 domain Toprim_4 PF13662.6 GAJ46691.1 - 4.9e-17 62.2 0.0 8.6e-17 61.4 0.0 1.4 1 0 0 1 1 1 1 Toprim domain RecR PF02132.15 GAJ46691.1 - 2.1e-09 36.8 0.4 3.6e-09 36.0 0.4 1.3 1 0 0 1 1 1 1 RecR protein Toprim PF01751.22 GAJ46691.1 - 0.0046 17.2 0.0 0.0086 16.3 0.0 1.4 1 0 0 1 1 1 1 Toprim domain YbaB_DNA_bd PF02575.16 GAJ46692.1 - 1.5e-22 79.7 0.8 1.7e-22 79.4 0.8 1.0 1 0 0 1 1 1 1 YbaB/EbfC DNA-binding family Wtap PF17098.5 GAJ46692.1 - 0.089 12.7 1.0 0.087 12.7 1.0 1.3 1 1 0 1 1 1 0 WTAP/Mum2p family ABC_tran PF00005.27 GAJ46693.1 - 9.3e-23 81.3 0.0 1.5e-22 80.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 GAJ46693.1 - 2.1e-05 24.5 1.1 0.0011 18.9 0.2 2.1 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 GAJ46693.1 - 0.00035 20.3 1.0 0.0007 19.3 1.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 GAJ46693.1 - 0.00048 20.7 1.7 0.00048 20.7 1.7 1.7 2 1 0 2 2 1 1 AAA domain SMC_N PF02463.19 GAJ46693.1 - 0.0025 17.3 3.5 0.055 12.9 1.1 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain MMR_HSR1 PF01926.23 GAJ46693.1 - 0.004 17.2 0.1 0.0083 16.2 0.1 1.7 1 1 0 1 1 1 1 50S ribosome-binding GTPase SbcCD_C PF13558.6 GAJ46693.1 - 0.0052 17.0 0.4 0.21 11.8 0.4 2.4 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_15 PF13175.6 GAJ46693.1 - 0.012 15.4 1.7 0.015 15.0 0.2 1.9 2 0 0 2 2 2 0 AAA ATPase domain ABC_ATPase PF09818.9 GAJ46693.1 - 0.012 14.4 0.7 0.028 13.2 0.3 1.6 2 0 0 2 2 2 0 Predicted ATPase of the ABC class RsgA_GTPase PF03193.16 GAJ46693.1 - 0.015 15.2 0.0 0.023 14.6 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_22 PF13401.6 GAJ46693.1 - 0.028 14.7 0.0 0.054 13.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 GAJ46693.1 - 0.032 13.9 0.0 0.048 13.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 GAJ46693.1 - 0.041 13.8 0.1 0.12 12.3 0.1 1.7 2 0 0 2 2 2 0 NACHT domain AAA_16 PF13191.6 GAJ46693.1 - 0.058 13.8 0.0 0.099 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain FtsK_SpoIIIE PF01580.18 GAJ46693.1 - 0.079 12.3 0.3 0.13 11.6 0.3 1.2 1 0 0 1 1 1 0 FtsK/SpoIIIE family RNA_helicase PF00910.22 GAJ46693.1 - 0.11 12.9 0.1 0.9 10.0 0.0 2.3 2 0 0 2 2 2 0 RNA helicase Dynamin_N PF00350.23 GAJ46693.1 - 0.12 12.4 0.1 0.25 11.4 0.1 1.5 1 0 0 1 1 1 0 Dynamin family VirE PF05272.11 GAJ46693.1 - 0.13 11.9 0.0 0.28 10.9 0.0 1.5 1 0 0 1 1 1 0 Virulence-associated protein E AAA_33 PF13671.6 GAJ46693.1 - 0.16 12.1 0.1 0.37 11.0 0.1 1.6 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 GAJ46693.1 - 0.18 11.0 0.1 0.25 10.5 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain Pox_A32 PF04665.12 GAJ46693.1 - 0.22 11.0 2.3 0.51 9.8 0.0 2.3 3 0 0 3 3 3 0 Poxvirus A32 protein Ribosomal_L31 PF01197.18 GAJ46694.1 - 9.2e-20 70.7 0.2 1.1e-19 70.4 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L31 SPOR PF05036.13 GAJ46695.1 - 0.0039 17.5 0.1 0.0069 16.7 0.1 1.4 1 0 0 1 1 1 1 Sporulation related domain Response_reg PF00072.24 GAJ46696.1 - 3.5e-16 59.3 0.0 4.1e-16 59.1 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain RDM PF11002.8 GAJ46696.1 - 0.044 13.8 0.1 9.3 6.4 0.0 2.4 2 0 0 2 2 2 0 RFPL defining motif (RDM) HATPase_c PF02518.26 GAJ46697.1 - 8.9e-18 64.8 0.0 1.5e-17 64.1 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 GAJ46697.1 - 6.3e-09 35.8 0.0 1.7e-08 34.3 0.0 1.7 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.6 GAJ46697.1 - 0.016 15.1 0.0 0.065 13.1 0.0 2.0 2 0 0 2 2 2 0 GHKL domain HPTransfase PF10090.9 GAJ46697.1 - 0.15 11.8 0.0 0.28 11.0 0.0 1.3 1 0 0 1 1 1 0 Histidine phosphotransferase C-terminal domain Secretin PF00263.21 GAJ46699.1 - 3.9e-27 95.0 0.4 6e-27 94.4 0.4 1.3 1 0 0 1 1 1 1 Bacterial type II and III secretion system protein TPR_19 PF14559.6 GAJ46699.1 - 6e-06 26.7 8.6 0.03 14.8 0.5 3.5 2 1 1 3 3 3 2 Tetratricopeptide repeat TPR_2 PF07719.17 GAJ46699.1 - 6.2e-05 22.8 19.6 0.095 12.9 0.2 5.8 6 0 0 6 6 5 2 Tetratricopeptide repeat TPR_16 PF13432.6 GAJ46699.1 - 0.00062 20.4 1.8 0.00062 20.4 1.8 3.9 3 1 1 4 4 4 2 Tetratricopeptide repeat YfiO PF13525.6 GAJ46699.1 - 0.009 15.8 3.0 0.018 14.7 3.0 1.4 1 0 0 1 1 1 1 Outer membrane lipoprotein TPR_17 PF13431.6 GAJ46699.1 - 0.025 15.0 8.2 0.17 12.3 0.4 4.1 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_11 PF13414.6 GAJ46699.1 - 0.026 14.2 9.9 0.13 12.0 2.0 4.1 4 0 0 4 4 4 0 TPR repeat TPR_9 PF13371.6 GAJ46699.1 - 0.041 14.0 0.3 1.9 8.7 0.4 2.5 2 0 0 2 2 2 0 Tetratricopeptide repeat ANAPC3 PF12895.7 GAJ46699.1 - 0.24 11.7 5.1 0.28 11.4 2.1 2.2 1 1 1 2 2 2 0 Anaphase-promoting complex, cyclosome, subunit 3 TPR_12 PF13424.6 GAJ46699.1 - 0.3 11.4 7.0 0.91 9.9 2.5 3.1 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_14 PF13428.6 GAJ46699.1 - 3.9 8.6 9.6 2.3 9.3 0.8 4.1 2 1 2 4 4 4 0 Tetratricopeptide repeat Secretin PF00263.21 GAJ46700.1 - 6.8e-22 77.9 3.5 1.2e-21 77.1 3.5 1.4 1 0 0 1 1 1 1 Bacterial type II and III secretion system protein TPR_19 PF14559.6 GAJ46700.1 - 6.1e-07 29.9 3.5 0.031 14.8 0.1 3.5 2 1 1 3 3 3 2 Tetratricopeptide repeat TPR_2 PF07719.17 GAJ46700.1 - 3.6e-06 26.7 2.2 0.12 12.6 0.0 4.1 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_9 PF13371.6 GAJ46700.1 - 4.4e-06 26.8 0.0 0.034 14.3 0.0 2.8 3 0 0 3 3 3 2 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 GAJ46700.1 - 0.032 14.3 1.6 33 4.7 0.1 3.6 3 0 0 3 3 3 0 Fis1 C-terminal tetratricopeptide repeat TPR_1 PF00515.28 GAJ46700.1 - 0.038 13.8 0.6 26 4.8 0.0 4.0 4 0 0 4 4 4 0 Tetratricopeptide repeat ANAPC3 PF12895.7 GAJ46700.1 - 0.14 12.4 4.4 0.077 13.2 1.2 2.2 3 0 0 3 3 3 0 Anaphase-promoting complex, cyclosome, subunit 3 TPR_11 PF13414.6 GAJ46700.1 - 0.21 11.3 8.7 8 6.2 0.1 4.4 4 1 0 4 4 4 0 TPR repeat TPR_14 PF13428.6 GAJ46700.1 - 0.26 12.2 0.9 1.5e+02 3.6 0.1 3.7 2 1 2 4 4 4 0 Tetratricopeptide repeat TPR_8 PF13181.6 GAJ46700.1 - 0.85 10.0 3.9 1.3e+02 3.2 0.4 4.2 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_16 PF13432.6 GAJ46700.1 - 2.8 8.7 4.3 18 6.1 0.0 2.8 2 1 1 3 3 3 0 Tetratricopeptide repeat PD40 PF07676.12 GAJ46701.1 - 9.8e-15 54.1 1.1 1.6e-07 31.1 0.2 3.4 4 0 0 4 4 4 2 WD40-like Beta Propeller Repeat TolB_N PF04052.13 GAJ46701.1 - 1.1e-06 28.8 0.0 1.9e-06 28.0 0.0 1.4 1 0 0 1 1 1 1 TolB amino-terminal domain DPPIV_N PF00930.21 GAJ46701.1 - 0.0029 16.4 0.0 0.86 8.3 0.0 2.6 1 1 2 3 3 3 2 Dipeptidyl peptidase IV (DPP IV) N-terminal region Gmad1 PF10647.9 GAJ46701.1 - 0.063 13.0 0.0 0.2 11.3 0.0 1.8 2 0 0 2 2 2 0 Lipoprotein LpqB beta-propeller domain Peptidase_M24 PF00557.24 GAJ46702.1 - 2.3e-40 138.5 0.0 3.1e-40 138.1 0.0 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Peptidase_M24_C PF16188.5 GAJ46702.1 - 4.3e-16 58.7 0.2 8.8e-16 57.7 0.2 1.5 1 0 0 1 1 1 1 C-terminal region of peptidase_M24 QIL1 PF15884.5 GAJ46702.1 - 0.6 10.8 2.7 0.52 11.0 0.6 2.0 2 0 0 2 2 2 0 MICOS complex subunit MIC13, QIL1 MS_channel PF00924.18 GAJ46703.1 - 7.1e-30 104.1 3.4 7.1e-30 104.1 3.4 1.8 2 0 0 2 2 2 1 Mechanosensitive ion channel DUF2121 PF09894.9 GAJ46703.1 - 0.15 11.6 1.2 6.5 6.2 0.1 2.3 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2121) HTH_23 PF13384.6 GAJ46704.1 - 2e-05 24.2 0.0 3.1e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.6 GAJ46704.1 - 0.00093 19.3 0.0 0.0014 18.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.6 GAJ46704.1 - 0.0012 18.5 0.0 0.002 17.8 0.0 1.3 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_7 PF02796.15 GAJ46704.1 - 0.0053 16.8 0.0 0.0074 16.3 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_psq PF05225.16 GAJ46704.1 - 0.0058 16.3 0.2 0.011 15.5 0.2 1.4 1 0 0 1 1 1 1 helix-turn-helix, Psq domain HTH_AsnC-type PF13404.6 GAJ46704.1 - 0.0077 16.0 0.0 0.011 15.6 0.0 1.2 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain Terminase_5 PF06056.12 GAJ46704.1 - 0.022 14.7 0.0 0.03 14.2 0.0 1.2 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) Sigma70_ECF PF07638.11 GAJ46704.1 - 0.029 14.3 0.0 0.033 14.1 0.0 1.1 1 0 0 1 1 1 0 ECF sigma factor GerE PF00196.19 GAJ46704.1 - 0.04 13.5 0.0 0.068 12.7 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_50 PF18024.1 GAJ46704.1 - 0.049 13.3 0.0 0.071 12.7 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain DmpG_comm PF07836.11 GAJ46704.1 - 0.049 13.2 0.0 0.093 12.3 0.0 1.5 1 0 0 1 1 1 0 DmpG-like communication domain HTH_11 PF08279.12 GAJ46704.1 - 0.068 13.1 0.0 0.09 12.7 0.0 1.3 1 0 0 1 1 1 0 HTH domain CENP-B_N PF04218.13 GAJ46704.1 - 0.074 12.7 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 CENP-B N-terminal DNA-binding domain Sigma70_r4_2 PF08281.12 GAJ46704.1 - 0.074 12.7 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_24 PF13412.6 GAJ46704.1 - 0.09 12.3 0.0 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding TetR_N PF00440.23 GAJ46704.1 - 0.1 12.4 0.1 0.17 11.7 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_Tnp_4 PF13613.6 GAJ46704.1 - 0.12 12.2 0.0 0.2 11.4 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease MarR_2 PF12802.7 GAJ46704.1 - 0.13 12.1 0.0 0.17 11.8 0.0 1.2 1 0 0 1 1 1 0 MarR family DDE_Tnp_1_2 PF13586.6 GAJ46705.1 - 2.6e-06 27.7 0.4 4.6e-06 26.9 0.4 1.5 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 GAJ46705.1 - 0.002 17.8 1.4 0.018 14.7 1.4 1.9 1 1 0 1 1 1 1 Transposase DDE domain Peptidase_M50 PF02163.22 GAJ46707.1 - 1.9e-56 191.2 0.0 2.5e-56 190.8 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M50 PDZ_2 PF13180.6 GAJ46707.1 - 5.7e-07 29.8 0.0 1.1e-06 28.9 0.0 1.4 1 0 0 1 1 1 1 PDZ domain Peptidase_M50B PF13398.6 GAJ46707.1 - 0.081 12.5 5.6 0.08 12.6 0.4 2.9 2 1 0 2 2 2 0 Peptidase M50B-like PDZ PF00595.24 GAJ46707.1 - 0.16 12.3 0.0 0.32 11.4 0.0 1.5 1 0 0 1 1 1 0 PDZ domain VanW PF04294.13 GAJ46709.1 - 3.1e-19 68.9 0.0 4.8e-19 68.3 0.0 1.3 1 0 0 1 1 1 1 VanW like protein VanW PF04294.13 GAJ46710.1 - 4.1e-09 36.2 0.0 5.8e-09 35.7 0.0 1.2 1 0 0 1 1 1 1 VanW like protein TonB_2 PF13103.6 GAJ46711.1 - 0.002 18.3 0.0 0.0025 18.0 0.0 1.1 1 0 0 1 1 1 1 TonB C terminal RIC3 PF15361.6 GAJ46712.1 - 0.86 10.0 9.5 45 4.4 9.5 2.1 1 1 0 1 1 1 0 Resistance to inhibitors of cholinesterase homologue 3 SICA_C PF12879.7 GAJ46712.1 - 0.89 9.6 6.9 0.29 11.2 3.5 1.7 1 1 1 2 2 2 0 SICA C-terminal inner membrane domain CCDC106 PF15794.5 GAJ46712.1 - 1.7 8.3 14.7 2.2 7.9 14.7 1.0 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 106 DUF4710 PF15828.5 GAJ46712.1 - 2.1 8.5 15.2 4.7 7.4 10.6 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4710) ExbD PF02472.16 GAJ46713.1 - 3.5e-23 82.2 1.1 4.1e-23 82.0 1.1 1.1 1 0 0 1 1 1 1 Biopolymer transport protein ExbD/TolR DUF2149 PF09919.9 GAJ46713.1 - 0.022 15.0 1.2 0.045 14.0 0.3 1.9 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2149) MotA_ExbB PF01618.16 GAJ46714.1 - 3.3e-34 117.4 0.4 5.7e-34 116.6 0.4 1.4 1 0 0 1 1 1 1 MotA/TolQ/ExbB proton channel family DUF2207 PF09972.9 GAJ46714.1 - 0.16 10.7 0.5 0.22 10.3 0.3 1.4 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) ABC_tran PF00005.27 GAJ46715.1 - 4.8e-35 121.0 0.1 7.7e-35 120.4 0.1 1.3 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 GAJ46715.1 - 1.8e-06 27.6 0.0 4.3e-06 26.3 0.0 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain ABC_membrane PF00664.23 GAJ46715.1 - 1.7e-05 24.6 5.7 2.5e-05 24.1 5.7 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region AAA_29 PF13555.6 GAJ46715.1 - 0.016 15.0 0.2 0.12 12.1 0.1 2.2 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_5 PF07728.14 GAJ46715.1 - 0.022 14.8 0.1 0.49 10.4 0.1 2.6 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) G-alpha PF00503.20 GAJ46715.1 - 0.022 14.0 0.1 0.032 13.4 0.1 1.3 1 0 0 1 1 1 0 G-protein alpha subunit MMR_HSR1 PF01926.23 GAJ46715.1 - 0.024 14.7 0.0 0.055 13.6 0.0 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 GAJ46715.1 - 0.033 14.1 0.0 0.079 12.9 0.0 1.6 1 0 0 1 1 1 0 RsgA GTPase LIP PF03583.14 GAJ46715.1 - 0.072 12.4 1.6 1.4 8.2 0.3 2.5 1 1 1 2 2 2 0 Secretory lipase cobW PF02492.19 GAJ46715.1 - 0.1 12.2 0.0 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain ABC_membrane PF00664.23 GAJ46716.1 - 2.1e-05 24.3 3.3 2.5e-05 24.1 3.3 1.0 1 0 0 1 1 1 1 ABC transporter transmembrane region MFS_1 PF07690.16 GAJ46718.1 - 3.6e-31 108.4 41.3 3.6e-31 108.4 41.3 1.8 2 0 0 2 2 2 1 Major Facilitator Superfamily DUF3693 PF12472.8 GAJ46719.1 - 0.14 11.8 0.1 1.2 8.9 0.1 1.9 2 0 0 2 2 2 0 Phage related protein Ribosomal_S21 PF01165.20 GAJ46720.1 - 1.3e-12 47.2 7.4 1.3e-12 47.2 7.4 1.6 1 1 1 2 2 2 1 Ribosomal protein S21 Acetyltransf_1 PF00583.25 GAJ46721.1 - 3.9e-14 52.9 0.0 5.2e-14 52.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 GAJ46721.1 - 2.1e-10 40.9 0.0 3.2e-10 40.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 GAJ46721.1 - 3.9e-10 39.8 0.0 6.9e-10 38.9 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 GAJ46721.1 - 0.0002 21.5 0.0 0.00023 21.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 GAJ46721.1 - 0.00068 19.7 0.0 0.001 19.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 GAJ46721.1 - 0.0017 18.4 0.0 0.0025 17.9 0.0 1.3 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase FR47 PF08445.10 GAJ46721.1 - 0.0079 16.1 0.0 0.016 15.2 0.0 1.6 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.7 GAJ46721.1 - 0.031 15.0 0.0 0.042 14.5 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain His_Phos_1 PF00300.22 GAJ46722.1 - 1.2e-36 126.2 0.0 1.5e-36 125.9 0.0 1.0 1 0 0 1 1 1 1 Histidine phosphatase superfamily (branch 1) PrpR_N PF06506.11 GAJ46722.1 - 0.001 18.7 0.1 0.49 9.9 0.0 2.1 2 0 0 2 2 2 2 Propionate catabolism activator MarR_2 PF12802.7 GAJ46723.1 - 3.8e-10 39.5 0.1 6.2e-10 38.8 0.1 1.4 1 0 0 1 1 1 1 MarR family MarR PF01047.22 GAJ46723.1 - 5.1e-09 35.9 0.0 8e-09 35.3 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 GAJ46723.1 - 4.4e-08 33.5 0.0 7.3e-08 32.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.6 GAJ46723.1 - 1e-05 25.0 0.0 2e-05 24.0 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 GAJ46723.1 - 0.0017 18.1 0.1 0.004 16.9 0.1 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain Rrf2 PF02082.20 GAJ46723.1 - 0.09 13.1 0.2 0.28 11.6 0.1 1.9 1 1 1 2 2 2 0 Transcriptional regulator TrmB PF01978.19 GAJ46723.1 - 0.092 12.7 0.0 0.14 12.1 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB SMC_ScpB PF04079.16 GAJ46723.1 - 0.099 12.3 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 Segregation and condensation complex subunit ScpB SnoaL_2 PF12680.7 GAJ46724.1 - 1.4e-10 41.7 0.1 1.7e-10 41.4 0.1 1.1 1 0 0 1 1 1 1 SnoaL-like domain SnoaL_3 PF13474.6 GAJ46724.1 - 1.3e-06 28.6 0.0 1.7e-06 28.3 0.0 1.3 1 1 0 1 1 1 1 SnoaL-like domain DUF4440 PF14534.6 GAJ46724.1 - 4e-05 24.0 0.0 4.7e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4440) DUF4904 PF16247.5 GAJ46724.1 - 0.11 12.4 0.0 0.12 12.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4904) MarR PF01047.22 GAJ46725.1 - 4.5e-06 26.5 0.0 1.1e-05 25.2 0.0 1.7 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 GAJ46725.1 - 0.00021 21.1 0.0 0.00052 19.8 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 GAJ46725.1 - 0.0014 19.1 0.0 0.003 18.0 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain EcKinase PF02958.20 GAJ46725.1 - 0.0016 17.9 0.0 0.0025 17.2 0.0 1.4 1 0 0 1 1 1 1 Ecdysteroid kinase Choline_kinase PF01633.20 GAJ46725.1 - 0.013 15.1 0.1 0.023 14.3 0.1 1.5 1 0 0 1 1 1 0 Choline/ethanolamine kinase APH PF01636.23 GAJ46725.1 - 0.014 15.3 0.1 0.022 14.7 0.1 1.4 1 0 0 1 1 1 0 Phosphotransferase enzyme family RNA_pol_Rpb2_6 PF00562.28 GAJ46725.1 - 0.1 11.7 0.0 0.13 11.3 0.0 1.1 1 0 0 1 1 1 0 RNA polymerase Rpb2, domain 6 SnoaL_3 PF13474.6 GAJ46726.1 - 0.00044 20.5 0.0 0.00049 20.3 0.0 1.0 1 0 0 1 1 1 1 SnoaL-like domain SnoaL_2 PF12680.7 GAJ46726.1 - 0.015 15.9 0.0 0.016 15.9 0.0 1.1 1 0 0 1 1 1 0 SnoaL-like domain DUF4440 PF14534.6 GAJ46726.1 - 0.034 14.5 0.0 0.035 14.5 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4440) AAA_28 PF13521.6 GAJ46727.1 - 2.6e-07 31.0 0.0 3e-07 30.8 0.0 1.0 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.6 GAJ46728.1 - 2.7e-08 34.2 0.1 2.8e-08 34.2 0.1 1.0 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 GAJ46728.1 - 3e-05 24.6 0.1 3.5e-05 24.4 0.1 1.1 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 GAJ46728.1 - 0.0067 16.7 0.0 0.0068 16.7 0.0 1.1 1 0 0 1 1 1 1 AAA domain Viral_helicase1 PF01443.18 GAJ46728.1 - 0.012 15.4 0.1 0.012 15.4 0.1 1.0 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_30 PF13604.6 GAJ46728.1 - 0.012 15.3 0.0 0.012 15.3 0.0 1.1 1 0 0 1 1 1 0 AAA domain ATP_bind_2 PF03668.15 GAJ46728.1 - 0.016 14.5 0.0 0.016 14.5 0.0 1.0 1 0 0 1 1 1 0 P-loop ATPase protein family KTI12 PF08433.10 GAJ46728.1 - 0.017 14.6 0.0 0.017 14.6 0.0 1.0 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_16 PF13191.6 GAJ46728.1 - 0.027 14.8 0.0 0.027 14.8 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain AAA_33 PF13671.6 GAJ46728.1 - 0.027 14.6 0.0 0.028 14.6 0.0 1.1 1 0 0 1 1 1 0 AAA domain TrwB_AAD_bind PF10412.9 GAJ46728.1 - 0.029 13.3 0.0 0.029 13.3 0.0 1.1 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain Herpes_Helicase PF02689.14 GAJ46728.1 - 0.031 12.2 0.0 0.031 12.2 0.0 1.0 1 0 0 1 1 1 0 Helicase AAA_19 PF13245.6 GAJ46728.1 - 0.033 14.5 0.0 0.033 14.5 0.0 1.1 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 GAJ46728.1 - 0.05 14.0 0.0 0.051 14.0 0.0 1.1 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 GAJ46728.1 - 0.052 13.3 0.0 0.052 13.3 0.0 1.1 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 GAJ46728.1 - 0.057 12.8 0.0 0.057 12.8 0.0 1.0 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI cobW PF02492.19 GAJ46728.1 - 0.059 13.0 0.0 0.059 13.0 0.0 1.1 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_7 PF12775.7 GAJ46728.1 - 0.075 12.5 0.0 0.075 12.5 0.0 1.1 1 0 0 1 1 1 0 P-loop containing dynein motor region DAP3 PF10236.9 GAJ46728.1 - 0.078 12.1 0.0 0.078 12.1 0.0 1.1 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 PduV-EutP PF10662.9 GAJ46728.1 - 0.13 12.1 0.0 0.13 12.1 0.0 1.1 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_29 PF13555.6 GAJ46728.1 - 0.13 12.0 0.0 0.16 11.8 0.0 1.2 1 0 0 1 1 1 0 P-loop containing region of AAA domain G-alpha PF00503.20 GAJ46728.1 - 0.14 11.3 0.0 0.14 11.3 0.0 1.0 1 0 0 1 1 1 0 G-protein alpha subunit tRNA_bind PF01588.20 GAJ46729.1 - 6.5e-09 35.8 0.0 7.4e-09 35.6 0.0 1.0 1 0 0 1 1 1 1 Putative tRNA binding domain Transpeptidase PF00905.22 GAJ46730.1 - 4.2e-40 137.8 0.5 6.2e-40 137.3 0.5 1.2 1 0 0 1 1 1 1 Penicillin binding protein transpeptidase domain Beta-lactamase2 PF13354.6 GAJ46730.1 - 0.043 13.4 0.0 0.095 12.3 0.0 1.6 2 0 0 2 2 2 0 Beta-lactamase enzyme family Pyr_excise PF03013.14 GAJ46732.1 - 0.17 11.9 0.0 0.17 11.9 0.0 1.1 1 0 0 1 1 1 0 Pyrimidine dimer DNA glycosylase DUF4460 PF14687.6 GAJ46735.1 - 0.086 12.9 4.7 0.38 10.8 0.2 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4460) tRNA-synt_1 PF00133.22 GAJ46737.1 - 1.3e-169 565.3 0.0 1.5e-169 565.1 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.11 GAJ46737.1 - 4.9e-21 74.9 0.5 2.1e-10 39.9 0.0 3.9 3 1 0 3 3 3 3 tRNA synthetases class I (M) Anticodon_1 PF08264.13 GAJ46737.1 - 4.4e-16 59.2 0.0 9.2e-16 58.2 0.0 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.19 GAJ46737.1 - 4.1e-06 26.3 0.0 0.094 12.0 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.6 GAJ46737.1 - 0.0012 18.4 0.0 0.0023 17.5 0.0 1.3 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1f PF01921.18 GAJ46737.1 - 0.0035 16.3 0.0 0.0092 14.9 0.0 1.6 2 0 0 2 2 2 1 tRNA synthetases class I (K) zf-FPG_IleRS PF06827.14 GAJ46737.1 - 0.15 11.9 6.1 0.33 10.8 6.1 1.6 1 0 0 1 1 1 0 Zinc finger found in FPG and IleRS Response_reg PF00072.24 GAJ46738.1 - 8.5e-11 42.0 0.0 5.7e-10 39.4 0.0 1.9 1 1 0 1 1 1 1 Response regulator receiver domain GTP_EFTU PF00009.27 GAJ46739.1 - 3.8e-70 235.4 0.0 6e-70 234.7 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 GAJ46739.1 - 2e-41 140.6 0.1 3.6e-41 139.7 0.1 1.4 1 0 0 1 1 1 1 Elongation factor G, domain IV EFG_II PF14492.6 GAJ46739.1 - 4.2e-33 113.3 0.1 8.1e-33 112.3 0.1 1.5 1 0 0 1 1 1 1 Elongation Factor G, domain II EFG_C PF00679.24 GAJ46739.1 - 3.9e-30 103.7 0.1 1.1e-29 102.3 0.1 1.8 1 0 0 1 1 1 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.25 GAJ46739.1 - 2.5e-17 63.0 0.3 1.3e-16 60.7 0.1 2.3 2 0 0 2 2 2 1 Elongation factor Tu domain 2 RF3_C PF16658.5 GAJ46739.1 - 6.8e-07 29.2 0.0 1.9e-06 27.8 0.0 1.7 2 0 0 2 2 2 1 Class II release factor RF3, C-terminal domain MMR_HSR1 PF01926.23 GAJ46739.1 - 0.00013 22.0 0.0 0.00028 21.0 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase AIG1 PF04548.16 GAJ46739.1 - 0.05 12.9 0.0 0.1 11.9 0.0 1.5 1 0 0 1 1 1 0 AIG1 family Pro_Al_protease PF02983.14 GAJ46739.1 - 0.061 13.4 0.0 0.22 11.6 0.0 1.9 2 0 0 2 2 2 0 Alpha-lytic protease prodomain Cytochrom_B558a PF05038.13 GAJ46740.1 - 0.062 12.9 6.3 0.15 11.6 0.3 2.3 2 0 0 2 2 2 0 Cytochrome Cytochrome b558 alpha-subunit Hid1 PF12722.7 GAJ46740.1 - 5.5 5.0 19.0 6.7 4.7 19.0 1.1 1 0 0 1 1 1 0 High-temperature-induced dauer-formation protein DDE_3 PF13358.6 GAJ46741.1 - 0.17 11.6 0.0 0.29 10.9 0.0 1.4 1 1 0 1 1 1 0 DDE superfamily endonuclease Guanylate_kin PF00625.21 GAJ46742.1 - 2.5e-05 24.0 0.2 3.1e-05 23.7 0.2 1.3 1 1 0 1 1 1 1 Guanylate kinase AAA_18 PF13238.6 GAJ46742.1 - 0.056 14.0 0.0 0.073 13.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain DnaT PF17948.1 GAJ46742.1 - 0.056 13.1 0.3 0.13 12.0 0.1 1.7 2 0 0 2 2 2 0 DnaT DNA-binding domain Thymidylate_kin PF02223.17 GAJ46742.1 - 0.1 12.3 0.1 0.16 11.7 0.1 1.3 1 0 0 1 1 1 0 Thymidylate kinase SBP_bac_8 PF13416.6 GAJ46745.1 - 1.2e-25 90.9 0.0 1.5e-25 90.6 0.0 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 GAJ46745.1 - 3e-15 56.3 0.1 4.4e-15 55.8 0.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 GAJ46745.1 - 9.5e-13 48.8 0.0 1.2e-12 48.4 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 GAJ46745.1 - 0.00027 20.8 0.0 0.011 15.5 0.0 2.1 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein DDE_Tnp_1 PF01609.21 GAJ46746.1 - 1.4e-05 24.9 0.0 1.7e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.12 GAJ46746.1 - 0.008 15.5 0.0 0.01 15.1 0.0 1.2 1 0 0 1 1 1 1 Archaeal putative transposase ISC1217 PAC1 PF16094.5 GAJ46747.1 - 0.066 12.4 0.0 0.11 11.7 0.0 1.3 1 0 0 1 1 1 0 Proteasome assembly chaperone 4 CBM_4_9 PF02018.17 GAJ46748.1 - 0.12 12.6 0.0 0.15 12.3 0.0 1.1 1 0 0 1 1 1 0 Carbohydrate binding domain Arb2 PF09757.9 GAJ46749.1 - 0.045 12.9 0.1 0.047 12.8 0.1 1.0 1 0 0 1 1 1 0 Arb2 domain Med21 PF11221.8 GAJ46750.1 - 7.3e-05 23.1 11.0 9.7e-05 22.7 11.0 1.2 1 0 0 1 1 1 1 Subunit 21 of Mediator complex Tropomyosin_1 PF12718.7 GAJ46750.1 - 0.002 18.3 11.2 0.0061 16.7 11.3 1.7 1 1 0 1 1 1 1 Tropomyosin like Laminin_II PF06009.12 GAJ46750.1 - 0.0025 17.9 6.0 0.0038 17.2 6.0 1.3 1 0 0 1 1 1 1 Laminin Domain II CCDC53 PF10152.9 GAJ46750.1 - 0.0025 18.2 7.5 0.0025 18.2 7.5 2.2 1 1 1 2 2 2 1 Subunit CCDC53 of WASH complex HOOK PF05622.12 GAJ46750.1 - 0.0082 14.3 10.2 0.0094 14.2 10.2 1.1 1 0 0 1 1 1 1 HOOK protein DUF3450 PF11932.8 GAJ46750.1 - 0.01 15.1 8.2 0.013 14.8 8.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) BCDHK_Adom3 PF10436.9 GAJ46750.1 - 0.014 15.2 2.2 0.021 14.6 2.0 1.3 1 1 0 1 1 1 0 Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase APG6_N PF17675.1 GAJ46750.1 - 0.027 15.0 10.2 0.035 14.6 10.2 1.2 1 0 0 1 1 1 0 Apg6 coiled-coil region HSCB_C PF07743.13 GAJ46750.1 - 0.029 14.8 1.5 0.029 14.8 1.5 2.1 2 0 0 2 2 2 0 HSCB C-terminal oligomerisation domain RasGEF_N_2 PF14663.6 GAJ46750.1 - 0.034 14.5 2.3 0.047 14.1 2.3 1.2 1 0 0 1 1 1 0 Rapamycin-insensitive companion of mTOR RasGEF_N domain PP2C_C PF07830.13 GAJ46750.1 - 0.051 14.0 1.9 0.051 14.0 1.9 2.1 1 1 1 2 2 2 0 Protein serine/threonine phosphatase 2C, C-terminal domain DUF641 PF04859.12 GAJ46750.1 - 0.2 12.0 6.4 0.31 11.4 6.4 1.4 1 0 0 1 1 1 0 Plant protein of unknown function (DUF641) Fungal_TACC PF12709.7 GAJ46750.1 - 0.22 12.0 9.5 0.44 11.0 9.5 1.5 1 0 0 1 1 1 0 Fungal Transforming acidic coiled-coil (TACC) proteins Prefoldin_2 PF01920.20 GAJ46750.1 - 0.69 9.9 14.8 0.9 9.5 5.0 2.4 1 1 1 2 2 2 0 Prefoldin subunit DUF4200 PF13863.6 GAJ46750.1 - 1.2 9.6 16.4 1.2e+02 3.1 15.5 2.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4200) Fib_alpha PF08702.10 GAJ46750.1 - 1.2 9.3 14.9 1.3 9.2 8.6 2.0 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family Ly49 PF08391.10 GAJ46750.1 - 4 7.8 13.9 0.6 10.5 10.1 1.5 2 0 0 2 2 2 0 Ly49-like protein, N-terminal region Mitofilin PF09731.9 GAJ46753.1 - 0.0053 15.7 5.8 0.0058 15.5 5.8 1.0 1 0 0 1 1 1 1 Mitochondrial inner membrane protein ComGF PF15980.5 GAJ46753.1 - 0.008 16.5 3.3 0.015 15.7 3.3 1.4 1 0 0 1 1 1 1 Putative Competence protein ComGF TAF1D PF15333.6 GAJ46753.1 - 0.011 15.5 2.7 0.011 15.4 2.6 1.3 1 1 0 1 1 1 0 TATA box-binding protein-associated factor 1D FeoB_Cyto PF17910.1 GAJ46753.1 - 0.1 13.1 3.2 5.3 7.7 0.3 2.2 2 0 0 2 2 2 0 FeoB cytosolic helical domain HTH_23 PF13384.6 GAJ46755.1 - 0.00092 18.9 0.0 0.0014 18.3 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain HTH_psq PF05225.16 GAJ46755.1 - 0.037 13.8 0.1 0.062 13.1 0.1 1.4 1 0 0 1 1 1 0 helix-turn-helix, Psq domain Bac_DNA_binding PF00216.21 GAJ46756.1 - 4.3e-17 62.1 1.0 5.2e-17 61.8 1.0 1.1 1 0 0 1 1 1 1 Bacterial DNA-binding protein ABC_tran PF00005.27 GAJ46757.1 - 8.5e-34 117.0 0.0 1.2e-33 116.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 GAJ46757.1 - 2.5e-10 40.7 0.3 0.00038 20.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 GAJ46757.1 - 0.00018 21.0 0.0 0.0021 17.6 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain IstB_IS21 PF01695.17 GAJ46757.1 - 0.00032 20.5 0.0 0.057 13.2 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein RsgA_GTPase PF03193.16 GAJ46757.1 - 0.0011 19.0 0.0 0.0018 18.2 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_23 PF13476.6 GAJ46757.1 - 0.0074 16.8 0.1 0.01 16.3 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 GAJ46757.1 - 0.01 15.5 0.0 0.022 14.5 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.29 GAJ46757.1 - 0.014 15.9 0.0 0.16 12.4 0.0 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 GAJ46757.1 - 0.045 14.1 0.1 0.071 13.5 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain Mg_chelatase PF01078.21 GAJ46757.1 - 0.054 12.9 0.0 1.8 7.9 0.0 2.2 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 GAJ46757.1 - 0.078 13.0 0.0 9.6 6.2 0.0 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 GAJ46757.1 - 0.084 13.1 0.0 0.25 11.6 0.0 1.7 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 GAJ46757.1 - 0.11 12.6 0.0 0.22 11.6 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase DDE_Tnp_1 PF01609.21 GAJ46760.1 - 0.019 14.6 0.0 0.021 14.5 0.0 1.0 1 0 0 1 1 1 0 Transposase DDE domain OstA PF03968.14 GAJ46762.1 - 1.3e-09 38.3 0.1 0.001 19.2 0.0 3.3 2 1 1 3 3 3 2 OstA-like protein LptC PF06835.13 GAJ46762.1 - 0.0045 16.6 0.0 0.098 12.2 0.0 2.5 3 0 0 3 3 3 1 Lipopolysaccharide-assembly, LptC-related OstA_2 PF13100.6 GAJ46762.1 - 0.035 13.7 0.2 8.4 6.0 0.0 3.0 2 1 0 3 3 3 0 OstA-like protein ABC_tran PF00005.27 GAJ46763.1 - 1.7e-30 106.3 0.0 2.1e-30 106.0 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 GAJ46763.1 - 7e-07 29.3 0.9 0.0059 16.5 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SbcCD_C PF13558.6 GAJ46763.1 - 0.0009 19.4 0.1 0.011 16.0 0.1 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit SMC_N PF02463.19 GAJ46763.1 - 0.0074 15.7 0.1 2.3 7.6 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 GAJ46763.1 - 0.038 13.7 0.1 0.065 13.0 0.1 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain DDE_3 PF13358.6 GAJ46764.1 - 4.1e-20 72.0 0.0 4.5e-20 71.9 0.0 1.1 1 0 0 1 1 1 1 DDE superfamily endonuclease rve PF00665.26 GAJ46764.1 - 0.019 15.1 0.0 0.022 14.9 0.0 1.1 1 0 0 1 1 1 0 Integrase core domain Homez PF11569.8 GAJ46764.1 - 0.08 12.4 0.1 11 5.6 0.0 2.2 2 0 0 2 2 2 0 Homeodomain leucine-zipper encoding, Homez Bac_GH3_C PF18034.1 GAJ46766.1 - 0.16 11.8 0.0 0.16 11.7 0.0 1.1 1 0 0 1 1 1 0 Bacterial Glycosyl hydrolase family 3 C-terminal domain OmpA PF00691.20 GAJ46767.1 - 2.1e-13 50.5 0.0 2.9e-13 50.0 0.0 1.2 1 0 0 1 1 1 1 OmpA family Ribosomal_S13 PF00416.22 GAJ46768.1 - 6.3e-27 94.5 2.6 1.8e-25 89.8 2.6 2.0 1 1 0 1 1 1 1 Ribosomal protein S13/S18 FbpA PF05833.11 GAJ46768.1 - 0.022 13.5 0.0 0.022 13.5 0.0 1.1 1 0 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) Ribosomal_S11 PF00411.19 GAJ46769.1 - 6e-39 132.9 0.2 7.1e-39 132.6 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S11 DmpG_comm PF07836.11 GAJ46769.1 - 0.013 15.0 0.1 0.029 13.9 0.0 1.7 1 1 1 2 2 2 0 DmpG-like communication domain PEP-utilizers_C PF02896.18 GAJ46769.1 - 0.14 11.2 0.1 0.15 11.1 0.1 1.2 1 0 0 1 1 1 0 PEP-utilising enzyme, TIM barrel domain RNA_pol_A_CTD PF03118.15 GAJ46770.1 - 1.9e-21 75.6 0.0 3.1e-21 74.9 0.0 1.3 1 0 0 1 1 1 1 Bacterial RNA polymerase, alpha chain C terminal domain RNA_pol_L PF01193.24 GAJ46770.1 - 1e-20 72.9 0.0 1.5e-20 72.4 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_A_bac PF01000.26 GAJ46770.1 - 1.3e-15 57.8 0.0 9.3e-15 55.0 0.0 2.0 2 0 0 2 2 2 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L_2 PF13656.6 GAJ46770.1 - 0.089 12.6 0.0 0.4 10.5 0.0 1.9 2 0 0 2 2 2 0 RNA polymerase Rpb3/Rpb11 dimerisation domain Ribosomal_L17 PF01196.19 GAJ46771.1 - 5.7e-27 94.5 0.0 7.2e-27 94.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L17 DnaJ PF00226.31 GAJ46772.1 - 2.9e-17 62.5 1.7 3.2e-17 62.4 1.7 1.0 1 0 0 1 1 1 1 DnaJ domain DnaJ_C PF01556.18 GAJ46773.1 - 6.9e-33 113.8 0.0 8.3e-33 113.6 0.0 1.1 1 0 0 1 1 1 1 DnaJ C terminal domain DnaJ_CXXCXGXG PF00684.19 GAJ46773.1 - 1.4e-11 44.5 18.9 2.8e-11 43.6 18.9 1.5 1 0 0 1 1 1 1 DnaJ central domain Anti-TRAP PF15777.5 GAJ46773.1 - 0.62 10.1 19.1 0.77 9.8 5.7 2.8 1 1 1 2 2 2 0 Tryptophan RNA-binding attenuator protein inhibitory protein DUF3035 PF11233.8 GAJ46775.1 - 0.0012 19.2 0.2 0.0022 18.3 0.2 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF3035) PSP PF04046.16 GAJ46775.1 - 0.13 12.2 0.0 0.2 11.5 0.0 1.2 1 0 0 1 1 1 0 PSP Peptidase_A8 PF01252.18 GAJ46776.1 - 3.5e-31 108.3 7.7 4.5e-31 108.0 7.7 1.1 1 0 0 1 1 1 1 Signal peptidase (SPase) II ABC_tran PF00005.27 GAJ46777.1 - 6.4e-31 107.7 0.0 1.1e-30 106.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 GAJ46777.1 - 6.1e-07 29.5 0.5 0.026 14.3 0.2 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system GST_C_3 PF14497.6 GAJ46777.1 - 8.6e-06 25.9 0.1 3.6e-05 23.9 0.1 2.1 2 0 0 2 2 2 1 Glutathione S-transferase, C-terminal domain AAA_29 PF13555.6 GAJ46777.1 - 0.00012 21.7 0.2 0.00027 20.6 0.2 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain GST_N_3 PF13417.6 GAJ46777.1 - 0.0005 20.4 0.0 0.0014 19.0 0.0 1.7 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_C PF00043.25 GAJ46777.1 - 0.0017 18.5 0.0 0.0076 16.5 0.0 2.0 2 0 0 2 2 2 1 Glutathione S-transferase, C-terminal domain SMC_N PF02463.19 GAJ46777.1 - 0.0018 17.8 0.0 0.0036 16.8 0.0 1.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain GST_C_2 PF13410.6 GAJ46777.1 - 0.025 14.6 0.1 0.07 13.2 0.1 1.7 1 0 0 1 1 1 0 Glutathione S-transferase, C-terminal domain AAA_16 PF13191.6 GAJ46777.1 - 0.054 13.9 0.8 0.15 12.4 0.8 1.8 1 1 0 1 1 1 0 AAA ATPase domain GST_N_2 PF13409.6 GAJ46777.1 - 0.07 13.4 0.0 0.45 10.8 0.0 2.2 2 0 0 2 2 2 0 Glutathione S-transferase, N-terminal domain RsgA_GTPase PF03193.16 GAJ46777.1 - 0.084 12.8 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase SbcCD_C PF13558.6 GAJ46777.1 - 0.15 12.3 0.0 1.3 9.4 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit MeaB PF03308.16 GAJ46777.1 - 0.2 10.6 0.0 0.3 10.0 0.0 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB MacB_PCD PF12704.7 GAJ46778.1 - 2.4e-14 54.1 0.0 3.9e-14 53.5 0.0 1.3 1 0 0 1 1 1 1 MacB-like periplasmic core domain FtsX PF02687.21 GAJ46778.1 - 1.6e-12 47.7 1.6 1.6e-12 47.7 1.6 3.2 3 0 0 3 3 3 1 FtsX-like permease family NPCC PF08058.11 GAJ46778.1 - 0.071 13.2 0.8 0.17 11.9 0.8 1.7 1 0 0 1 1 1 0 Nuclear pore complex component SIT PF15330.6 GAJ46778.1 - 1.5 9.3 4.3 3.6 8.1 1.5 2.4 2 0 0 2 2 2 0 SHP2-interacting transmembrane adaptor protein, SIT TauE PF01925.19 GAJ46778.1 - 1.8 8.2 14.2 0.42 10.2 8.0 2.4 2 1 0 2 2 2 0 Sulfite exporter TauE/SafE DUF4096 PF13340.6 GAJ46779.1 - 1.6e-21 76.3 0.1 1.8e-21 76.2 0.1 1.0 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) PFEMP PF03011.15 GAJ46779.1 - 0.042 14.5 0.1 0.042 14.5 0.1 1.1 1 0 0 1 1 1 0 PFEMP DBL domain DDE_3 PF13358.6 GAJ46781.1 - 1.3e-16 60.6 0.3 1.5e-16 60.5 0.3 1.1 1 0 0 1 1 1 1 DDE superfamily endonuclease DNA_photolyase PF00875.18 GAJ46782.1 - 5.2e-33 114.4 0.0 6.5e-33 114.0 0.0 1.0 1 0 0 1 1 1 1 DNA photolyase FAD_binding_7 PF03441.14 GAJ46783.1 - 1.6e-81 272.6 1.5 1.9e-81 272.4 1.5 1.1 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase HTH_23 PF13384.6 GAJ46785.1 - 0.00066 19.4 0.0 0.001 18.8 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_r4_2 PF08281.12 GAJ46785.1 - 0.025 14.2 0.0 0.11 12.2 0.0 1.8 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_11 PF08279.12 GAJ46785.1 - 0.031 14.2 0.0 0.046 13.7 0.0 1.3 1 0 0 1 1 1 0 HTH domain HTH_38 PF13936.6 GAJ46785.1 - 0.034 13.9 0.0 0.044 13.5 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain DUF1016_N PF17761.1 GAJ46785.1 - 0.083 13.1 0.0 0.087 13.0 0.0 1.1 1 0 0 1 1 1 0 DUF1016 N-terminal domain HTH_19 PF12844.7 GAJ46785.1 - 0.086 12.9 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain PPR_3 PF13812.6 GAJ46787.1 - 0.019 15.1 0.1 0.028 14.5 0.1 1.3 1 0 0 1 1 1 0 Pentatricopeptide repeat domain GT-D PF08759.11 GAJ46787.1 - 0.028 14.1 0.1 0.032 13.9 0.1 1.1 1 0 0 1 1 1 0 Glycosyltransferase GT-D fold Ribosomal_L18_c PF14204.6 GAJ46787.1 - 0.041 14.8 1.2 0.13 13.2 1.2 1.7 1 1 0 1 1 1 0 Ribosomal L18 C-terminal region DNA_pol3_delta2 PF13177.6 GAJ46789.1 - 2.1e-21 76.4 0.0 3.2e-21 75.8 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase III, delta subunit AAA PF00004.29 GAJ46789.1 - 0.011 16.2 0.0 0.021 15.2 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) FliJ PF02050.16 GAJ46790.1 - 0.016 15.4 0.2 0.016 15.4 0.2 1.8 2 0 0 2 2 2 0 Flagellar FliJ protein FAM76 PF16046.5 GAJ46790.1 - 0.37 10.1 7.4 0.6 9.4 7.4 1.4 1 0 0 1 1 1 0 FAM76 protein DDE_Tnp_1 PF01609.21 GAJ46791.1 - 1.4e-10 41.2 0.0 1.8e-10 40.8 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain OST3_OST6 PF04756.13 GAJ46791.1 - 0.021 14.2 0.2 0.023 14.1 0.2 1.0 1 0 0 1 1 1 0 OST3 / OST6 family, transporter family HTH_23 PF13384.6 GAJ46792.1 - 0.0016 18.1 0.0 0.0026 17.5 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_psq PF05225.16 GAJ46792.1 - 0.035 13.8 0.1 0.062 13.1 0.1 1.4 1 0 0 1 1 1 0 helix-turn-helix, Psq domain MFS_1 PF07690.16 GAJ46795.1 - 0.0022 17.0 25.3 0.0022 17.0 25.3 2.4 1 1 1 2 2 2 2 Major Facilitator Superfamily Ubie_methyltran PF01209.18 GAJ46796.1 - 5.8e-45 153.4 0.0 6.4e-45 153.3 0.0 1.0 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.6 GAJ46796.1 - 2e-11 44.4 0.0 2.9e-11 43.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 GAJ46796.1 - 5.9e-11 42.9 0.0 8.5e-11 42.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 GAJ46796.1 - 1.6e-06 28.0 0.0 2.1e-06 27.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 GAJ46796.1 - 0.00023 21.1 0.0 0.00045 20.1 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 GAJ46796.1 - 0.0011 19.7 0.0 0.0017 19.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 GAJ46796.1 - 0.17 11.4 0.0 0.54 9.8 0.0 1.7 2 0 0 2 2 2 0 Methyltransferase small domain MarC PF01914.17 GAJ46797.1 - 2.9e-34 118.3 11.1 3.3e-34 118.1 11.1 1.0 1 0 0 1 1 1 1 MarC family integral membrane protein 4HB_MCP_1 PF12729.7 GAJ46797.1 - 8 6.0 5.3 2.2 7.8 1.7 1.8 2 0 0 2 2 2 0 Four helix bundle sensory module for signal transduction DapB_C PF05173.14 GAJ46798.1 - 2.5e-24 85.6 0.0 3.8e-24 85.0 0.0 1.2 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, C-terminus DapB_N PF01113.20 GAJ46798.1 - 2.7e-05 24.3 0.1 0.00033 20.8 0.1 2.5 1 1 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Fe-S_biosyn PF01521.20 GAJ46799.1 - 4.5e-16 59.0 0.1 5.2e-16 58.8 0.1 1.0 1 0 0 1 1 1 1 Iron-sulphur cluster biosynthesis G3P_acyltransf PF02660.15 GAJ46800.1 - 2.9e-43 147.7 18.7 3.5e-43 147.5 18.7 1.1 1 0 0 1 1 1 1 Glycerol-3-phosphate acyltransferase DDE_Tnp_1_2 PF13586.6 GAJ46801.1 - 3.4e-07 30.5 1.3 8.1e-07 29.3 1.3 1.7 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 GAJ46801.1 - 0.00016 21.4 3.2 0.00059 19.5 3.1 1.8 1 1 0 1 1 1 1 Transposase DDE domain DUF4455 PF14643.6 GAJ46801.1 - 0.027 13.2 0.5 0.033 12.9 0.5 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4455) OSCP PF00213.18 GAJ46801.1 - 0.16 12.1 0.0 0.18 11.9 0.0 1.1 1 0 0 1 1 1 0 ATP synthase delta (OSCP) subunit CNOT1_HEAT PF16418.5 GAJ46802.1 - 0.5 10.4 11.4 1.7 8.7 0.5 4.4 4 1 0 4 4 4 0 CCR4-NOT transcription complex subunit 1 HEAT repeat KinB_sensor PF16767.5 GAJ46802.1 - 0.62 10.5 3.3 31 5.0 0.0 3.4 3 0 0 3 3 3 0 Sensor domain of alginate biosynthesis sensor protein KinB DUF5617 PF18493.1 GAJ46802.1 - 3.1 8.0 7.7 0.6 10.2 0.0 3.7 4 0 0 4 4 4 0 Domain of unknown function (DUF5617) HTH_28 PF13518.6 GAJ46805.1 - 0.026 14.6 0.0 0.036 14.2 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain Terminase_5 PF06056.12 GAJ46805.1 - 0.043 13.7 0.0 0.065 13.1 0.0 1.4 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) HTH_23 PF13384.6 GAJ46805.1 - 0.089 12.6 0.1 0.13 12.1 0.1 1.3 1 0 0 1 1 1 0 Homeodomain-like domain Meiotic_rec114 PF03525.14 GAJ46806.1 - 0.013 14.5 3.1 0.018 14.1 3.1 1.2 1 0 0 1 1 1 0 Meiotic recombination protein rec114 Oxidored_nitro PF00148.19 GAJ46806.1 - 0.068 11.9 0.0 0.082 11.6 0.0 1.1 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase CRR7 PF12095.8 GAJ46806.1 - 0.15 12.6 4.8 1.7 9.2 0.1 2.3 1 1 1 2 2 2 0 Protein CHLORORESPIRATORY REDUCTION 7 DAAD PF18752.1 GAJ46806.1 - 0.18 11.6 4.6 0.21 11.4 4.6 1.1 1 0 0 1 1 1 0 Dictyosteliid AID/APOBEC-like Deaminase Terminase_6 PF03237.15 GAJ46808.1 - 2.6e-23 82.8 0.0 5.3e-23 81.8 0.0 1.5 1 0 0 1 1 1 1 Terminase-like family Terminase_6C PF17289.2 GAJ46808.1 - 6.3e-07 29.6 0.0 1.2e-06 28.7 0.0 1.5 1 0 0 1 1 1 1 Terminase RNaseH-like domain DnaB_C PF03796.15 GAJ46810.1 - 2.6e-101 338.3 0.2 3.3e-101 337.9 0.2 1.1 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain DnaB PF00772.21 GAJ46810.1 - 7.1e-22 77.4 0.5 1.8e-21 76.2 0.5 1.7 1 0 0 1 1 1 1 DnaB-like helicase N terminal domain AAA_25 PF13481.6 GAJ46810.1 - 8.9e-16 58.0 0.3 1.6e-15 57.2 0.1 1.5 2 0 0 2 2 2 1 AAA domain Rad51 PF08423.11 GAJ46810.1 - 0.00014 21.2 0.5 0.24 10.6 0.0 2.9 3 0 0 3 3 3 2 Rad51 Amido_AtzD_TrzD PF09663.10 GAJ46810.1 - 0.02 13.9 0.0 0.033 13.2 0.0 1.3 1 0 0 1 1 1 0 Amidohydrolase ring-opening protein (Amido_AtzD_TrzD) AAA PF00004.29 GAJ46810.1 - 0.021 15.2 0.2 0.1 13.0 0.1 2.2 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) ATPase PF06745.13 GAJ46810.1 - 0.041 13.2 0.2 0.23 10.8 0.2 2.1 1 1 0 1 1 1 0 KaiC CNOT1_HEAT PF16418.5 GAJ46814.1 - 0.018 15.1 7.3 0.7 10.0 0.8 3.4 3 1 1 4 4 4 0 CCR4-NOT transcription complex subunit 1 HEAT repeat KKLCAg1 PF15204.6 GAJ46814.1 - 0.21 11.7 3.7 0.86 9.7 0.2 3.1 3 0 0 3 3 3 0 Kita-kyushu lung cancer antigen 1 DUF5388 PF17363.2 GAJ46814.1 - 0.78 10.0 6.5 34 4.7 0.0 4.7 4 0 0 4 4 4 0 Family of unknown function (DUF5388) DUF5617 PF18493.1 GAJ46815.1 - 0.02 15.0 0.2 0.11 12.6 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF5617) Epsilon_antitox PF08998.11 GAJ46815.1 - 0.079 13.2 0.1 16 5.8 0.0 3.0 2 1 1 3 3 3 0 Bacterial epsilon antitoxin FAST_1 PF06743.15 GAJ46815.1 - 0.11 12.5 2.9 4.8 7.2 0.1 4.4 4 2 0 4 4 4 0 FAST kinase-like protein, subdomain 1 HTH_38 PF13936.6 GAJ46820.1 - 0.00014 21.5 0.0 0.00023 20.9 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 GAJ46820.1 - 0.0004 20.1 0.0 0.00059 19.6 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain UPF0122 PF04297.14 GAJ46820.1 - 0.011 16.0 0.0 0.015 15.6 0.0 1.2 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_AsnC-type PF13404.6 GAJ46820.1 - 0.034 14.0 0.0 0.045 13.6 0.0 1.2 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain MarR_2 PF12802.7 GAJ46820.1 - 0.038 13.9 0.0 0.043 13.7 0.0 1.2 1 0 0 1 1 1 0 MarR family HTH_28 PF13518.6 GAJ46820.1 - 0.047 13.8 0.0 0.079 13.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_11 PF08279.12 GAJ46820.1 - 0.084 12.8 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 HTH domain HTH_psq PF05225.16 GAJ46820.1 - 0.1 12.4 0.0 0.47 10.2 0.0 1.9 2 0 0 2 2 2 0 helix-turn-helix, Psq domain TetR_N PF00440.23 GAJ46820.1 - 0.1 12.4 0.0 0.17 11.7 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family Sigma70_r4_2 PF08281.12 GAJ46820.1 - 0.13 12.0 0.0 0.24 11.1 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 Bac_GH3_C PF18034.1 GAJ46820.1 - 0.18 11.6 0.0 0.18 11.5 0.0 1.1 1 0 0 1 1 1 0 Bacterial Glycosyl hydrolase family 3 C-terminal domain ABC_membrane PF00664.23 GAJ46821.1 - 2.7e-35 122.4 12.4 3.7e-35 121.9 12.4 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 GAJ46821.1 - 1.1e-29 103.7 0.0 2.5e-29 102.5 0.0 1.6 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 GAJ46821.1 - 1e-06 28.4 0.0 0.00075 19.0 0.0 2.4 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 GAJ46821.1 - 0.0067 16.3 0.2 0.34 10.7 0.1 2.3 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 GAJ46821.1 - 0.0081 16.7 1.0 0.059 13.9 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 GAJ46821.1 - 0.012 15.3 0.0 0.027 14.2 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Sec10 PF07393.11 GAJ46821.1 - 0.019 13.4 0.2 0.031 12.7 0.2 1.2 1 0 0 1 1 1 0 Exocyst complex component Sec10 ResIII PF04851.15 GAJ46821.1 - 0.022 14.7 0.2 0.064 13.2 0.0 1.8 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_16 PF13191.6 GAJ46821.1 - 0.029 14.8 0.0 0.21 12.0 0.0 2.3 2 1 0 2 2 2 0 AAA ATPase domain ABC_ATPase PF09818.9 GAJ46821.1 - 0.047 12.5 0.0 0.12 11.2 0.0 1.6 1 0 0 1 1 1 0 Predicted ATPase of the ABC class T2SSE PF00437.20 GAJ46821.1 - 0.053 12.6 0.0 0.085 11.9 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_22 PF13401.6 GAJ46821.1 - 0.056 13.7 0.6 0.7 10.2 0.2 2.7 2 1 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 GAJ46821.1 - 0.085 12.8 0.6 14 5.5 0.0 3.0 3 0 0 3 3 3 0 ATPase domain predominantly from Archaea AAA_14 PF13173.6 GAJ46821.1 - 0.087 12.9 1.7 1.5 8.8 0.0 2.8 3 0 0 3 3 3 0 AAA domain AAA_24 PF13479.6 GAJ46821.1 - 0.11 12.2 0.0 0.17 11.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain DEAD PF00270.29 GAJ46821.1 - 0.15 11.8 0.0 6.4 6.5 0.0 2.4 2 0 0 2 2 2 0 DEAD/DEAH box helicase SSB PF00436.25 GAJ46822.1 - 9.6e-36 122.0 0.6 1.1e-35 121.8 0.6 1.1 1 0 0 1 1 1 1 Single-strand binding protein family PROCN PF08083.11 GAJ46822.1 - 0.0066 15.2 0.2 0.0078 15.0 0.2 1.0 1 0 0 1 1 1 1 PROCN (NUC071) domain PI-TkoII_IV PF18714.1 GAJ46822.1 - 0.025 14.1 0.2 0.032 13.7 0.2 1.2 1 0 0 1 1 1 0 DNA polymerase II intein Domain IV CspB_prodomain PF18425.1 GAJ46822.1 - 0.14 12.2 0.0 0.28 11.2 0.0 1.5 1 0 0 1 1 1 0 Csp protease B prodomain AAA_23 PF13476.6 GAJ46825.1 - 0.0063 17.0 4.1 0.015 15.8 4.1 1.7 1 1 0 1 1 1 1 AAA domain DUF3781 PF12636.7 GAJ46825.1 - 0.0072 16.2 0.1 1.7 8.6 0.0 2.9 2 1 1 3 3 3 2 Protein of unknown function (DUF3781) Pox_J1 PF03338.15 GAJ46827.1 - 0.021 14.7 1.8 0.04 13.8 0.3 2.2 2 1 1 3 3 3 0 Poxvirus J1 protein SLT PF01464.20 GAJ46828.1 - 2.5e-12 46.5 0.0 1.2e-11 44.3 0.0 1.8 2 0 0 2 2 2 1 Transglycosylase SLT domain Nab6_mRNP_bdg PF10567.9 GAJ46828.1 - 0.065 12.7 0.1 0.11 12.0 0.1 1.4 1 0 0 1 1 1 0 RNA-recognition motif DDE_Tnp_1 PF01609.21 GAJ46829.1 - 0.004 16.8 0.0 0.0043 16.7 0.0 1.0 1 0 0 1 1 1 1 Transposase DDE domain ABC_tran PF00005.27 GAJ46830.1 - 2.9e-06 27.8 0.0 4e-06 27.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 GAJ46830.1 - 0.05 13.0 0.0 0.056 12.9 0.0 1.1 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 GAJ46830.1 - 0.07 12.9 0.1 0.11 12.3 0.1 1.3 1 0 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system UvrA_inter PF17760.1 GAJ46831.1 - 4.5e-31 107.1 0.2 1.6e-30 105.3 0.1 2.0 2 0 0 2 2 2 1 UvrA interaction domain ABC_tran PF00005.27 GAJ46831.1 - 8.8e-16 58.7 0.2 2.8e-05 24.6 0.0 3.5 3 0 0 3 3 3 3 ABC transporter AAA_29 PF13555.6 GAJ46831.1 - 1.4e-07 31.2 0.5 0.0079 15.9 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain SMC_N PF02463.19 GAJ46831.1 - 3e-07 30.1 0.1 0.42 10.0 0.0 3.1 3 0 0 3 3 3 3 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 GAJ46831.1 - 7.8e-07 29.6 0.1 0.012 16.0 0.0 2.7 3 0 0 3 3 2 2 AAA ATPase domain AAA_23 PF13476.6 GAJ46831.1 - 2.8e-05 24.7 0.6 0.029 14.9 0.1 2.5 2 0 0 2 2 2 2 AAA domain AAA_33 PF13671.6 GAJ46831.1 - 4.9e-05 23.5 0.0 1.4 9.1 0.0 3.7 4 0 0 4 4 4 2 AAA domain RsgA_GTPase PF03193.16 GAJ46831.1 - 5.4e-05 23.2 0.4 0.044 13.7 0.0 2.5 2 0 0 2 2 2 2 RsgA GTPase DnaJ_CXXCXGXG PF00684.19 GAJ46831.1 - 0.00015 22.1 8.3 0.032 14.6 1.3 2.6 2 0 0 2 2 2 2 DnaJ central domain ATPase PF06745.13 GAJ46831.1 - 0.00023 20.6 0.0 0.36 10.2 0.0 2.5 2 0 0 2 2 2 2 KaiC AAA_25 PF13481.6 GAJ46831.1 - 0.00036 20.2 0.2 0.064 12.8 0.0 2.7 3 0 0 3 3 3 1 AAA domain AAA_18 PF13238.6 GAJ46831.1 - 0.00045 20.8 0.1 1.7 9.2 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.6 GAJ46831.1 - 0.00084 19.6 0.4 0.14 12.4 0.0 2.7 2 0 0 2 2 2 1 AAA domain RNA12 PF10443.9 GAJ46831.1 - 0.0027 16.5 0.1 0.24 10.1 0.0 2.2 2 0 0 2 2 2 1 RNA12 protein cobW PF02492.19 GAJ46831.1 - 0.0042 16.7 0.1 1.9 8.0 0.0 2.4 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_24 PF13479.6 GAJ46831.1 - 0.0081 15.9 3.0 2.8 7.6 0.0 3.5 4 0 0 4 4 3 1 AAA domain DUF2075 PF09848.9 GAJ46831.1 - 0.0085 15.4 0.0 1.1 8.4 0.0 2.2 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) PRK PF00485.18 GAJ46831.1 - 0.0088 15.8 0.1 1.5 8.6 0.0 2.5 2 0 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family AAA_7 PF12775.7 GAJ46831.1 - 0.014 14.9 0.2 1.3 8.5 0.0 2.4 2 0 0 2 2 2 0 P-loop containing dynein motor region PhoH PF02562.16 GAJ46831.1 - 0.014 14.8 0.0 0.12 11.8 0.0 2.2 2 0 0 2 2 2 0 PhoH-like protein NACHT PF05729.12 GAJ46831.1 - 0.018 14.9 0.0 1.5 8.7 0.0 2.4 2 0 0 2 2 2 0 NACHT domain RNA_helicase PF00910.22 GAJ46831.1 - 0.024 15.0 0.1 3.2 8.2 0.0 2.4 2 0 0 2 2 2 0 RNA helicase APS_kinase PF01583.20 GAJ46831.1 - 0.038 13.9 0.1 3.5 7.5 0.0 2.3 2 0 0 2 2 2 0 Adenylylsulphate kinase Viral_helicase1 PF01443.18 GAJ46831.1 - 0.043 13.6 0.1 0.36 10.5 0.1 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AAA_14 PF13173.6 GAJ46831.1 - 0.051 13.6 0.0 3.1 7.9 0.0 2.5 2 0 0 2 2 2 0 AAA domain T2SSE PF00437.20 GAJ46831.1 - 0.059 12.4 0.6 1.6 7.8 0.1 2.7 3 0 0 3 3 3 0 Type II/IV secretion system protein MeaB PF03308.16 GAJ46831.1 - 0.062 12.3 0.1 0.59 9.1 0.0 2.1 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_21 PF13304.6 GAJ46831.1 - 0.067 13.0 4.9 4.7 6.9 0.1 3.4 4 0 0 4 4 3 0 AAA domain, putative AbiEii toxin, Type IV TA system ATPase_2 PF01637.18 GAJ46831.1 - 0.086 12.7 0.0 1.6 8.6 0.0 2.2 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea Cytidylate_kin PF02224.18 GAJ46831.1 - 0.087 12.5 0.4 0.35 10.6 0.0 2.0 2 0 0 2 2 2 0 Cytidylate kinase IstB_IS21 PF01695.17 GAJ46831.1 - 0.088 12.5 0.0 0.54 10.0 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein Sigma54_activat PF00158.26 GAJ46831.1 - 0.12 12.1 0.0 0.49 10.1 0.0 1.9 2 0 0 2 2 2 0 Sigma-54 interaction domain MMR_HSR1 PF01926.23 GAJ46831.1 - 0.13 12.4 0.8 20 5.3 0.1 3.2 3 0 0 3 3 3 0 50S ribosome-binding GTPase Rad17 PF03215.15 GAJ46831.1 - 0.14 12.0 0.1 0.54 10.2 0.0 2.0 2 0 0 2 2 2 0 Rad17 P-loop domain AAA_30 PF13604.6 GAJ46831.1 - 0.16 11.6 0.0 4.1 7.1 0.0 2.4 2 0 0 2 2 2 0 AAA domain FBD PF08387.10 GAJ46833.1 - 0.034 14.0 2.0 20 5.2 0.0 3.6 3 0 0 3 3 3 0 FBD YebG PF07130.12 GAJ46833.1 - 0.092 12.6 10.4 1.4 8.8 0.2 5.2 3 1 2 5 5 5 0 YebG protein Ala_racemase_N PF01168.20 GAJ46834.1 - 8.6e-54 182.5 0.0 1.3e-53 181.9 0.0 1.3 1 0 0 1 1 1 1 Alanine racemase, N-terminal domain Ala_racemase_C PF00842.21 GAJ46834.1 - 3.7e-30 104.3 0.0 5.4e-30 103.8 0.0 1.2 1 0 0 1 1 1 1 Alanine racemase, C-terminal domain HTH_23 PF13384.6 GAJ46835.1 - 0.00049 19.8 0.0 0.00064 19.5 0.0 1.2 1 0 0 1 1 1 1 Homeodomain-like domain HTH_psq PF05225.16 GAJ46835.1 - 0.018 14.7 0.1 0.031 14.0 0.1 1.4 1 0 0 1 1 1 0 helix-turn-helix, Psq domain HTH_28 PF13518.6 GAJ46835.1 - 0.14 12.3 0.0 0.2 11.8 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Bac_DNA_binding PF00216.21 GAJ46836.1 - 4.3e-17 62.1 1.0 5.2e-17 61.8 1.0 1.1 1 0 0 1 1 1 1 Bacterial DNA-binding protein ABC_tran PF00005.27 GAJ46837.1 - 8.5e-34 117.0 0.0 1.2e-33 116.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 GAJ46837.1 - 2.5e-10 40.7 0.3 0.00038 20.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 GAJ46837.1 - 0.00018 21.0 0.0 0.0021 17.6 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain IstB_IS21 PF01695.17 GAJ46837.1 - 0.00032 20.5 0.0 0.057 13.2 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein RsgA_GTPase PF03193.16 GAJ46837.1 - 0.0011 19.0 0.0 0.0018 18.2 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_23 PF13476.6 GAJ46837.1 - 0.0074 16.8 0.1 0.01 16.3 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 GAJ46837.1 - 0.01 15.5 0.0 0.022 14.5 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.29 GAJ46837.1 - 0.014 15.9 0.0 0.16 12.4 0.0 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 GAJ46837.1 - 0.045 14.1 0.1 0.071 13.5 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain Mg_chelatase PF01078.21 GAJ46837.1 - 0.054 12.9 0.0 1.8 7.9 0.0 2.2 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 GAJ46837.1 - 0.078 13.0 0.0 9.6 6.2 0.0 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 GAJ46837.1 - 0.084 13.1 0.0 0.25 11.6 0.0 1.7 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 GAJ46837.1 - 0.11 12.6 0.0 0.22 11.6 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase DDE_Tnp_1 PF01609.21 GAJ46840.1 - 3.5e-06 26.8 0.1 4.1e-06 26.6 0.1 1.1 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.12 GAJ46840.1 - 0.011 15.0 0.1 0.012 14.8 0.1 1.0 1 0 0 1 1 1 0 Archaeal putative transposase ISC1217 Pox_J1 PF03338.15 GAJ46842.1 - 0.0081 16.0 0.2 0.042 13.7 0.2 2.2 1 0 0 1 1 1 1 Poxvirus J1 protein SLT PF01464.20 GAJ46843.1 - 1.1e-11 44.4 0.0 4.9e-11 42.3 0.0 2.0 2 0 0 2 2 2 1 Transglycosylase SLT domain TPR_2 PF07719.17 GAJ46843.1 - 1.3e-06 28.1 0.3 0.071 13.3 0.1 4.0 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_12 PF13424.6 GAJ46843.1 - 0.049 13.9 0.0 24 5.3 0.0 2.8 2 1 0 2 2 2 0 Tetratricopeptide repeat TPR_1 PF00515.28 GAJ46843.1 - 0.05 13.4 0.4 26 4.9 0.2 3.4 3 0 0 3 3 3 0 Tetratricopeptide repeat Sel1 PF08238.12 GAJ46843.1 - 2 9.2 5.9 1.5 9.6 0.1 3.2 4 0 0 4 4 4 0 Sel1 repeat ABC_tran PF00005.27 GAJ46844.1 - 2e-45 154.7 1.8 1.1e-21 77.8 0.0 3.3 4 0 0 4 4 2 2 ABC transporter AAA_21 PF13304.6 GAJ46844.1 - 4.2e-16 59.6 6.2 0.001 18.9 0.0 4.6 4 0 0 4 4 4 4 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 GAJ46844.1 - 1.1e-13 51.2 1.4 0.0031 17.0 0.0 4.4 2 2 1 4 4 4 4 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 GAJ46844.1 - 5.9e-10 39.5 2.9 0.00022 21.5 0.0 3.2 3 1 0 3 3 2 2 AAA domain NACHT PF05729.12 GAJ46844.1 - 5.7e-09 36.1 2.0 0.0038 17.2 0.0 3.3 3 0 0 3 3 3 2 NACHT domain AAA_16 PF13191.6 GAJ46844.1 - 1.6e-08 35.1 0.3 0.0033 17.8 0.0 3.0 3 0 0 3 3 2 2 AAA ATPase domain Rad17 PF03215.15 GAJ46844.1 - 4.9e-08 33.1 0.2 0.0019 18.2 0.0 2.6 2 0 0 2 2 2 2 Rad17 P-loop domain MMR_HSR1 PF01926.23 GAJ46844.1 - 5.2e-08 33.0 0.0 0.0068 16.5 0.0 2.9 3 0 0 3 3 2 2 50S ribosome-binding GTPase AAA_29 PF13555.6 GAJ46844.1 - 1.4e-07 31.2 0.1 0.027 14.2 0.0 2.6 2 0 0 2 2 2 2 P-loop containing region of AAA domain RNA_helicase PF00910.22 GAJ46844.1 - 3e-07 30.8 0.0 0.028 14.8 0.0 2.9 3 0 0 3 3 2 2 RNA helicase RsgA_GTPase PF03193.16 GAJ46844.1 - 5e-07 29.8 0.2 0.036 14.0 0.0 2.7 3 0 0 3 3 2 2 RsgA GTPase AAA PF00004.29 GAJ46844.1 - 1.4e-06 28.8 0.0 0.077 13.4 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.6 GAJ46844.1 - 2.1e-06 28.4 11.2 0.0085 16.6 0.0 3.6 4 0 0 4 4 3 2 AAA domain AAA_18 PF13238.6 GAJ46844.1 - 4.2e-06 27.3 0.2 0.14 12.7 0.0 3.1 3 0 0 3 3 2 2 AAA domain AAA_33 PF13671.6 GAJ46844.1 - 5e-06 26.7 0.0 0.16 12.1 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_28 PF13521.6 GAJ46844.1 - 1.2e-05 25.7 0.2 0.26 11.5 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_15 PF13175.6 GAJ46844.1 - 1.6e-05 24.8 8.4 0.015 15.1 0.0 3.1 2 1 0 2 2 2 2 AAA ATPase domain AAA_14 PF13173.6 GAJ46844.1 - 2.9e-05 24.1 0.4 0.52 10.3 0.0 3.6 3 1 0 3 3 3 2 AAA domain DUF87 PF01935.17 GAJ46844.1 - 4.3e-05 23.7 1.4 1 9.4 0.1 3.6 3 0 0 3 3 3 2 Helicase HerA, central domain NB-ARC PF00931.22 GAJ46844.1 - 4.7e-05 22.7 0.0 0.16 11.1 0.0 2.5 2 0 0 2 2 2 2 NB-ARC domain ATP-synt_ab PF00006.25 GAJ46844.1 - 6.2e-05 22.8 0.0 0.08 12.6 0.0 2.3 2 0 0 2 2 2 2 ATP synthase alpha/beta family, nucleotide-binding domain ATPase_2 PF01637.18 GAJ46844.1 - 0.00031 20.7 1.6 0.46 10.3 0.0 2.7 3 0 0 3 3 2 2 ATPase domain predominantly from Archaea TsaE PF02367.17 GAJ46844.1 - 0.00034 20.6 0.7 0.08 12.9 0.0 2.7 3 0 0 3 3 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE MeaB PF03308.16 GAJ46844.1 - 0.00036 19.6 0.1 0.097 11.6 0.0 2.3 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB DUF815 PF05673.13 GAJ46844.1 - 0.00044 19.5 0.4 0.45 9.6 0.0 2.8 3 0 0 3 3 2 2 Protein of unknown function (DUF815) AAA_5 PF07728.14 GAJ46844.1 - 0.00063 19.7 0.1 1.3 9.0 0.0 2.6 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_25 PF13481.6 GAJ46844.1 - 0.00071 19.2 0.1 0.3 10.6 0.0 2.8 2 0 0 2 2 2 1 AAA domain Viral_helicase1 PF01443.18 GAJ46844.1 - 0.00082 19.2 0.0 1.1 9.0 0.0 2.5 2 0 0 2 2 2 2 Viral (Superfamily 1) RNA helicase AAA_24 PF13479.6 GAJ46844.1 - 0.00086 19.1 0.0 1.6 8.4 0.0 2.6 2 0 0 2 2 2 2 AAA domain PduV-EutP PF10662.9 GAJ46844.1 - 0.0013 18.5 0.2 0.77 9.5 0.0 2.6 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation Zeta_toxin PF06414.12 GAJ46844.1 - 0.0013 18.1 0.1 0.78 9.0 0.0 2.5 2 0 0 2 2 2 1 Zeta toxin AAA_7 PF12775.7 GAJ46844.1 - 0.0013 18.3 0.0 1.2 8.6 0.0 2.3 2 0 0 2 2 2 2 P-loop containing dynein motor region AAA_30 PF13604.6 GAJ46844.1 - 0.0015 18.3 0.0 1.3 8.7 0.0 2.6 2 0 0 2 2 2 1 AAA domain Roc PF08477.13 GAJ46844.1 - 0.0021 18.3 0.2 3.2 8.0 0.0 2.8 3 0 0 3 3 2 1 Ras of Complex, Roc, domain of DAPkinase NTPase_1 PF03266.15 GAJ46844.1 - 0.0042 17.0 1.3 3.3 7.6 0.0 3.4 4 0 0 4 4 2 1 NTPase PRK PF00485.18 GAJ46844.1 - 0.0048 16.7 0.0 1.3 8.7 0.0 2.4 2 0 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family RuvB_N PF05496.12 GAJ46844.1 - 0.0056 16.4 0.1 3.4 7.4 0.0 2.3 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain Dynamin_N PF00350.23 GAJ46844.1 - 0.0064 16.6 0.3 1.5 8.9 0.0 2.9 3 0 0 3 3 2 1 Dynamin family dNK PF01712.19 GAJ46844.1 - 0.0065 16.3 0.2 3 7.6 0.0 2.6 2 0 0 2 2 2 1 Deoxynucleoside kinase Cytidylate_kin PF02224.18 GAJ46844.1 - 0.0091 15.8 0.0 3.8 7.2 0.0 2.5 2 0 0 2 2 2 0 Cytidylate kinase KAP_NTPase PF07693.14 GAJ46844.1 - 0.0099 15.1 0.0 0.87 8.8 0.0 2.5 2 1 0 2 2 2 1 KAP family P-loop domain ABC_tran_Xtn PF12848.7 GAJ46844.1 - 0.021 14.9 1.7 8.1 6.5 0.3 2.8 2 0 0 2 2 2 0 ABC transporter Adeno_IVa2 PF02456.15 GAJ46844.1 - 0.021 13.7 0.3 0.4 9.4 0.1 2.3 2 0 0 2 2 2 0 Adenovirus IVa2 protein MobB PF03205.14 GAJ46844.1 - 0.028 14.3 0.2 8 6.4 0.0 2.5 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_17 PF13207.6 GAJ46844.1 - 0.035 14.5 0.0 7.3 7.0 0.0 2.9 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 GAJ46844.1 - 0.039 13.7 0.4 5.8 6.6 0.0 3.1 3 0 0 3 3 3 0 IstB-like ATP binding protein Ploopntkinase3 PF18751.1 GAJ46844.1 - 0.043 13.7 0.0 10 6.0 0.0 2.4 2 0 0 2 2 2 0 P-loop Nucleotide Kinase3 FeoB_N PF02421.18 GAJ46844.1 - 0.044 13.3 0.1 4.2 6.9 0.0 2.4 2 0 0 2 2 2 0 Ferrous iron transport protein B Septin PF00735.18 GAJ46844.1 - 0.051 12.8 0.0 7 5.8 0.0 2.3 2 0 0 2 2 2 0 Septin Ras PF00071.22 GAJ46844.1 - 0.063 12.9 0.0 5.3 6.6 0.0 2.3 2 0 0 2 2 2 0 Ras family Mg_chelatase PF01078.21 GAJ46844.1 - 0.11 11.8 0.0 9.4 5.5 0.0 2.5 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI ABC_tran_CTD PF16326.5 GAJ46844.1 - 0.14 12.5 7.2 0.58 10.4 7.2 2.1 1 1 0 1 1 1 0 ABC transporter C-terminal domain HipN PF18253.1 GAJ46844.1 - 0.15 11.8 0.1 1.6 8.5 0.0 2.9 3 0 0 3 3 2 0 Hsp70-interacting protein N N-terminal domain G-alpha PF00503.20 GAJ46844.1 - 0.36 9.9 4.3 2.6 7.1 0.0 3.0 3 1 0 3 3 3 0 G-protein alpha subunit tRNA-synt_1 PF00133.22 GAJ46845.1 - 1.5e-63 215.1 2.2 1.9e-22 79.3 0.5 5.9 2 1 3 5 5 5 5 tRNA synthetases class I (I, L, M and V) tRNA-synt_1_2 PF13603.6 GAJ46845.1 - 3.5e-52 176.6 0.0 5.8e-52 175.9 0.0 1.3 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1g PF09334.11 GAJ46845.1 - 1.8e-30 106.0 0.4 2e-16 59.8 0.0 4.5 3 1 1 4 4 4 4 tRNA synthetases class I (M) Anticodon_1 PF08264.13 GAJ46845.1 - 4.8e-13 49.3 0.1 1e-12 48.3 0.1 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.19 GAJ46845.1 - 1.6e-08 34.3 0.0 0.0016 17.9 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 GAJ46845.1 - 3.6e-07 29.4 0.0 0.0037 16.2 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1d PF00750.19 GAJ46845.1 - 0.0095 14.9 0.0 0.016 14.1 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (R) DNA_ligase_ZBD PF03119.16 GAJ46845.1 - 0.46 10.6 3.0 22 5.2 0.0 2.9 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain DUF3576 PF12100.8 GAJ46846.1 - 1.4e-18 66.8 0.0 2e-18 66.3 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF3576) NOG1 PF06858.14 GAJ46846.1 - 0.051 13.4 0.0 0.22 11.3 0.0 2.0 2 0 0 2 2 2 0 Nucleolar GTP-binding protein 1 (NOG1) HIT PF01230.23 GAJ46847.1 - 6.3e-17 62.1 0.0 7.2e-17 61.9 0.0 1.1 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 GAJ46847.1 - 1.4e-09 38.4 0.0 1.8e-09 38.1 0.0 1.1 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding SH3_2 PF07653.17 GAJ46847.1 - 0.12 12.1 0.0 0.22 11.2 0.0 1.4 1 0 0 1 1 1 0 Variant SH3 domain Foamy_BEL PF03274.14 GAJ46847.1 - 0.15 11.4 0.0 0.17 11.2 0.0 1.2 1 0 0 1 1 1 0 Foamy virus BEL 1/2 protein SecA_SW PF07516.13 GAJ46848.1 - 1.6e-50 172.0 9.3 1.6e-50 172.0 9.3 2.0 2 0 0 2 2 2 1 SecA Wing and Scaffold domain SecA_PP_bind PF01043.20 GAJ46848.1 - 3.3e-25 88.9 0.3 1.3e-24 87.0 0.3 2.1 1 0 0 1 1 1 1 SecA preprotein cross-linking domain SecA_DEAD PF07517.14 GAJ46848.1 - 3.8e-18 65.8 0.3 3.8e-18 65.8 0.3 2.0 2 0 0 2 2 2 1 SecA DEAD-like domain SEC-C PF02810.15 GAJ46848.1 - 8.6e-08 32.0 8.5 1.6e-07 31.1 8.5 1.5 1 0 0 1 1 1 1 SEC-C motif Helicase_C PF00271.31 GAJ46848.1 - 0.0075 16.6 1.2 0.028 14.7 0.0 2.5 2 0 0 2 2 2 1 Helicase conserved C-terminal domain SecA_DEAD PF07517.14 GAJ46849.1 - 9.7e-103 343.4 0.0 1.1e-102 343.2 0.0 1.0 1 0 0 1 1 1 1 SecA DEAD-like domain DEAD PF00270.29 GAJ46849.1 - 2.5e-06 27.4 0.0 3.9e-06 26.7 0.0 1.3 1 0 0 1 1 1 1 DEAD/DEAH box helicase COQ7 PF03232.13 GAJ46849.1 - 0.033 14.0 0.0 0.058 13.2 0.0 1.4 1 0 0 1 1 1 0 Ubiquinone biosynthesis protein COQ7 BATS PF06968.13 GAJ46850.1 - 3.3e-21 75.2 0.0 1.7e-20 72.9 0.0 2.1 2 0 0 2 2 2 1 Biotin and Thiamin Synthesis associated domain Radical_SAM PF04055.21 GAJ46850.1 - 3.3e-15 56.9 0.3 1.2e-14 55.1 0.4 1.8 2 0 0 2 2 2 1 Radical SAM superfamily DUF3795 PF12675.7 GAJ46850.1 - 0.093 13.2 1.5 0.17 12.3 1.5 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3795) Phasin_2 PF09361.10 GAJ46850.1 - 0.11 12.7 0.1 11 6.3 0.0 2.3 2 0 0 2 2 2 0 Phasin protein Aminotran_1_2 PF00155.21 GAJ46851.1 - 1e-50 173.0 0.0 1.2e-50 172.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 GAJ46851.1 - 6e-05 21.7 0.0 9.3e-05 21.1 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DUF3352 PF11832.8 GAJ46851.1 - 0.2 10.3 0.0 0.29 9.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3352) ketoacyl-synt PF00109.26 GAJ46853.1 - 1.4e-55 188.6 0.0 2.4e-55 187.8 0.0 1.4 1 0 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain Ketoacyl-synt_C PF02801.22 GAJ46853.1 - 7e-34 116.4 0.2 1.1e-33 115.7 0.2 1.4 1 0 0 1 1 1 1 Beta-ketoacyl synthase, C-terminal domain Thiolase_N PF00108.23 GAJ46853.1 - 0.024 14.0 0.3 0.037 13.4 0.3 1.3 1 0 0 1 1 1 0 Thiolase, N-terminal domain KAsynt_C_assoc PF16197.5 GAJ46853.1 - 0.052 14.0 0.1 0.17 12.4 0.1 1.9 1 0 0 1 1 1 0 Ketoacyl-synthetase C-terminal extension PP-binding PF00550.25 GAJ46854.1 - 1e-09 38.6 0.2 1.3e-09 38.3 0.2 1.2 1 0 0 1 1 1 1 Phosphopantetheine attachment site PP-binding_2 PF14573.6 GAJ46854.1 - 5.9e-05 23.2 0.3 0.00013 22.1 0.1 1.5 1 1 1 2 2 2 1 Acyl-carrier DUF1493 PF07377.12 GAJ46854.1 - 0.042 14.3 0.0 0.048 14.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1493) DUF4956 PF16316.5 GAJ46854.1 - 0.15 11.8 0.0 0.19 11.4 0.0 1.2 1 1 0 1 1 1 0 Domain of unknown function (DUF4956) Gly-zipper_Omp PF13488.6 GAJ46855.1 - 2.5e-06 27.4 24.1 4.8e-06 26.5 24.1 1.4 1 0 0 1 1 1 1 Glycine zipper Rick_17kDa_Anti PF05433.15 GAJ46855.1 - 2.2e-05 24.2 28.0 3.3e-05 23.7 28.0 1.3 1 0 0 1 1 1 1 Glycine zipper 2TM domain Gly-zipper_YMGG PF13441.6 GAJ46855.1 - 0.00058 19.5 23.1 0.00097 18.8 23.1 1.4 1 0 0 1 1 1 1 YMGG-like Gly-zipper TraT PF05818.12 GAJ46855.1 - 0.042 13.5 5.6 0.058 13.1 5.6 1.2 1 0 0 1 1 1 0 Enterobacterial TraT complement resistance protein CdiI_N PF18228.1 GAJ46856.1 - 0.063 13.1 0.1 0.12 12.3 0.1 1.4 1 1 0 1 1 1 0 CdiI N-terminal domain UvrD_C PF13361.6 GAJ46857.1 - 1.1e-12 48.1 0.0 1.7e-05 24.4 0.0 2.4 1 1 1 2 2 2 2 UvrD-like helicase C-terminal domain AAA_19 PF13245.6 GAJ46857.1 - 8.2e-11 42.4 0.0 1.6e-10 41.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain UvrD-helicase PF00580.21 GAJ46857.1 - 1e-08 35.1 1.0 0.00011 21.8 0.0 2.6 1 1 1 2 2 2 2 UvrD/REP helicase N-terminal domain NERD PF08378.11 GAJ46857.1 - 2.4e-08 34.4 0.2 1.3e-07 32.0 0.0 2.4 2 0 0 2 2 2 1 Nuclease-related domain DUF2075 PF09848.9 GAJ46857.1 - 3.9e-06 26.3 0.1 6.8e-06 25.6 0.1 1.3 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) ResIII PF04851.15 GAJ46857.1 - 9.3e-05 22.5 0.2 0.00024 21.2 0.2 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD PF00270.29 GAJ46857.1 - 0.00014 21.7 0.1 0.00039 20.2 0.1 1.8 2 0 0 2 2 2 1 DEAD/DEAH box helicase UvrD_C_2 PF13538.6 GAJ46857.1 - 0.00035 20.3 0.0 0.00074 19.3 0.0 1.5 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain AAA_30 PF13604.6 GAJ46857.1 - 0.0021 17.8 0.0 0.0031 17.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain Viral_helicase1 PF01443.18 GAJ46857.1 - 0.0033 17.2 0.0 0.65 9.7 0.0 2.6 3 0 0 3 3 3 1 Viral (Superfamily 1) RNA helicase AAA_22 PF13401.6 GAJ46857.1 - 0.0056 17.0 0.0 0.015 15.6 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 GAJ46857.1 - 0.026 14.9 0.0 0.056 13.8 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain PhoH PF02562.16 GAJ46857.1 - 0.06 12.8 0.0 0.11 12.0 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein RFXA_RFXANK_bdg PF15289.6 GAJ46857.1 - 0.11 12.9 0.0 0.29 11.5 0.0 1.7 1 0 0 1 1 1 0 Regulatory factor X-associated C-terminal binding domain APH PF01636.23 GAJ46858.1 - 6e-15 55.8 0.0 1.6e-14 54.4 0.0 1.6 1 1 0 1 1 1 1 Phosphotransferase enzyme family Pkinase PF00069.25 GAJ46858.1 - 0.0012 18.3 0.1 0.0091 15.4 0.1 2.0 2 0 0 2 2 2 1 Protein kinase domain Choline_kinase PF01633.20 GAJ46858.1 - 0.0041 16.7 0.0 0.018 14.6 0.0 1.8 1 1 0 1 1 1 1 Choline/ethanolamine kinase Fructosamin_kin PF03881.14 GAJ46858.1 - 0.013 14.7 0.3 0.44 9.7 0.0 2.5 3 0 0 3 3 3 0 Fructosamine kinase TspO_MBR PF03073.15 GAJ46859.1 - 1.5e-38 131.9 22.6 1.8e-38 131.7 22.6 1.0 1 0 0 1 1 1 1 TspO/MBR family ASFV_J13L PF05568.11 GAJ46859.1 - 0.46 10.2 1.3 0.84 9.4 1.3 1.4 1 0 0 1 1 1 0 African swine fever virus J13L protein FAD_binding_4 PF01565.23 GAJ46860.1 - 8.2e-25 87.2 0.3 1.3e-24 86.5 0.3 1.3 1 0 0 1 1 1 1 FAD binding domain GDPD PF03009.17 GAJ46860.1 - 4.1e-19 69.3 0.0 1.4e-18 67.5 0.0 2.0 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family ALO PF04030.14 GAJ46860.1 - 0.006 16.4 0.2 0.026 14.3 0.2 2.0 1 1 0 1 1 1 1 D-arabinono-1,4-lactone oxidase DUF1667 PF07892.11 GAJ46860.1 - 0.17 12.0 0.8 14 5.8 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1667) APH PF01636.23 GAJ46861.1 - 7.2e-33 114.5 0.0 9.5e-33 114.1 0.0 1.1 1 0 0 1 1 1 1 Phosphotransferase enzyme family DUF1679 PF07914.11 GAJ46861.1 - 0.0022 16.9 0.0 0.0032 16.4 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1679) Methyltransf_25 PF13649.6 GAJ46862.1 - 6.8e-08 33.1 0.0 1.4e-07 32.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 GAJ46862.1 - 6.5e-07 29.3 0.0 7.5e-07 29.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 GAJ46862.1 - 5.4e-05 23.8 0.0 0.0001 22.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 GAJ46862.1 - 0.0025 18.5 0.0 0.0048 17.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Acetyltransf_1 PF00583.25 GAJ46864.1 - 3.7e-12 46.5 0.0 4.3e-12 46.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 GAJ46864.1 - 2.4e-10 40.4 0.0 2.7e-10 40.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 GAJ46864.1 - 2.4e-09 37.5 0.0 3.3e-09 37.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 GAJ46864.1 - 0.00081 19.5 0.0 0.0011 19.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Pho86 PF11124.8 GAJ46864.1 - 0.13 11.7 0.0 0.16 11.4 0.0 1.2 1 0 0 1 1 1 0 Inorganic phosphate transporter Pho86 Acetyltransf_1 PF00583.25 GAJ46865.1 - 1.1e-12 48.2 0.0 1.5e-12 47.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 GAJ46865.1 - 5.8e-10 39.2 0.0 7.6e-10 38.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 GAJ46865.1 - 4.6e-09 36.6 0.0 6.9e-09 36.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 GAJ46865.1 - 0.019 15.1 0.0 0.027 14.5 0.0 1.5 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 GAJ46865.1 - 0.13 12.4 0.0 0.2 11.8 0.0 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase APH PF01636.23 GAJ46866.1 - 1.3e-13 51.4 0.0 1.9e-13 50.9 0.0 1.2 1 0 0 1 1 1 1 Phosphotransferase enzyme family Acetyltransf_8 PF13523.6 GAJ46866.1 - 2.6e-12 46.6 0.0 4.9e-12 45.8 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Choline_kinase PF01633.20 GAJ46866.1 - 2.9e-09 36.8 1.2 6.6e-09 35.7 1.2 1.6 1 0 0 1 1 1 1 Choline/ethanolamine kinase Acetyltransf_3 PF13302.7 GAJ46866.1 - 8.1e-09 36.3 0.0 1.6e-08 35.3 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 GAJ46866.1 - 1e-05 25.7 0.0 3e-05 24.2 0.0 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family RIO1 PF01163.22 GAJ46866.1 - 0.0037 16.9 0.1 0.0069 16.0 0.1 1.4 1 0 0 1 1 1 1 RIO1 family DUF1679 PF07914.11 GAJ46866.1 - 0.0087 15.0 0.2 0.013 14.4 0.2 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1679) Pkinase PF00069.25 GAJ46866.1 - 0.014 14.7 0.3 0.26 10.6 0.1 2.2 2 0 0 2 2 2 0 Protein kinase domain EcKinase PF02958.20 GAJ46866.1 - 0.09 12.1 0.0 0.66 9.2 0.0 1.9 1 1 1 2 2 2 0 Ecdysteroid kinase Acetyltransf_10 PF13673.7 GAJ46866.1 - 0.13 12.2 0.0 1.2 9.1 0.0 2.5 2 1 0 2 2 2 0 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 GAJ46867.1 - 3.3e-13 49.9 0.0 4.1e-13 49.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 GAJ46867.1 - 3.8e-11 43.3 0.0 7.3e-11 42.4 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 GAJ46867.1 - 1.2e-10 41.4 0.1 1.7e-10 40.9 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 GAJ46867.1 - 4.6e-07 30.6 0.0 5.2e-07 30.4 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 GAJ46867.1 - 4.9e-07 30.0 0.1 6.2e-07 29.7 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 GAJ46867.1 - 0.00015 21.8 0.0 0.00031 20.8 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 GAJ46867.1 - 0.012 15.8 0.0 0.02 15.0 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase IF3_N PF05198.16 GAJ46867.1 - 0.024 14.9 0.0 0.041 14.1 0.0 1.4 1 0 0 1 1 1 0 Translation initiation factor IF-3, N-terminal domain FR47 PF08445.10 GAJ46867.1 - 0.12 12.4 0.0 0.18 11.8 0.0 1.3 1 0 0 1 1 1 0 FR47-like protein Methyltransf_25 PF13649.6 GAJ46868.1 - 3.6e-20 72.5 0.0 7.5e-20 71.4 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 GAJ46868.1 - 8.3e-16 58.4 0.0 2.1e-15 57.2 0.0 1.7 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 GAJ46868.1 - 1.1e-14 54.4 0.3 2e-14 53.6 0.3 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 GAJ46868.1 - 8.2e-14 51.8 0.0 3.3e-13 49.8 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 GAJ46868.1 - 1.5e-13 51.3 0.0 3.6e-13 50.1 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 GAJ46868.1 - 9.6e-11 41.5 0.2 2e-10 40.4 0.1 1.6 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family MTS PF05175.14 GAJ46868.1 - 1.2e-06 28.2 0.1 1.9e-06 27.5 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_15 PF09445.10 GAJ46868.1 - 1.3e-05 24.8 0.1 0.00012 21.7 0.1 2.2 1 1 0 1 1 1 1 RNA cap guanine-N2 methyltransferase CMAS PF02353.20 GAJ46868.1 - 2e-05 24.0 0.2 4.2e-05 23.0 0.2 1.6 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase TPMT PF05724.11 GAJ46868.1 - 4.8e-05 23.1 0.0 7.7e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) TehB PF03848.14 GAJ46868.1 - 8.1e-05 22.1 0.2 0.00013 21.4 0.2 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_33 PF10017.9 GAJ46868.1 - 0.0048 16.1 0.0 0.01 15.0 0.0 1.5 1 0 0 1 1 1 1 Histidine-specific methyltransferase, SAM-dependent MethyltransfD12 PF02086.15 GAJ46868.1 - 0.0072 16.0 0.1 0.016 14.9 0.0 1.7 1 1 1 2 2 2 1 D12 class N6 adenine-specific DNA methyltransferase Methyltransf_32 PF13679.6 GAJ46868.1 - 0.017 15.1 0.1 0.026 14.5 0.1 1.3 1 0 0 1 1 1 0 Methyltransferase domain CheR PF01739.18 GAJ46868.1 - 0.054 13.0 0.1 0.45 10.0 0.1 2.4 1 1 1 2 2 2 0 CheR methyltransferase, SAM binding domain UPF0020 PF01170.18 GAJ46868.1 - 0.08 12.6 0.1 0.81 9.3 0.0 2.2 2 1 0 2 2 2 0 Putative RNA methylase family UPF0020 AdoMet_MTase PF07757.13 GAJ46868.1 - 0.13 12.7 0.0 0.29 11.5 0.0 1.6 2 0 0 2 2 2 0 Predicted AdoMet-dependent methyltransferase AAA_18 PF13238.6 GAJ46869.1 - 1.2e-05 25.8 0.1 2.7e-05 24.7 0.1 1.7 1 1 0 1 1 1 1 AAA domain Cytidylate_kin2 PF13189.6 GAJ46869.1 - 0.013 15.7 0.0 0.018 15.2 0.0 1.4 1 0 0 1 1 1 0 Cytidylate kinase-like family AAA PF00004.29 GAJ46869.1 - 0.017 15.5 0.0 0.031 14.7 0.0 1.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 GAJ46869.1 - 0.019 15.2 0.0 0.029 14.5 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 GAJ46869.1 - 0.082 13.2 0.1 0.12 12.7 0.1 1.7 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.15 GAJ46869.1 - 0.11 12.4 0.0 0.16 11.9 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_28 PF13521.6 GAJ46869.1 - 0.13 12.5 0.0 0.29 11.3 0.0 1.6 1 1 1 2 2 2 0 AAA domain NTPase_1 PF03266.15 GAJ46869.1 - 0.13 12.2 0.1 0.2 11.6 0.1 1.3 1 0 0 1 1 1 0 NTPase Ploopntkinase3 PF18751.1 GAJ46869.1 - 0.19 11.7 0.0 0.29 11.0 0.0 1.2 1 0 0 1 1 1 0 P-loop Nucleotide Kinase3 NUDIX PF00293.28 GAJ46870.1 - 3.8e-15 56.1 0.1 4.5e-15 55.9 0.1 1.0 1 0 0 1 1 1 1 NUDIX domain PhoQ_Sensor PF08918.10 GAJ46870.1 - 0.087 12.7 0.0 0.11 12.4 0.0 1.1 1 0 0 1 1 1 0 PhoQ Sensor NUDIX PF00293.28 GAJ46871.1 - 8.1e-14 51.8 0.0 1e-13 51.5 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain PhoQ_Sensor PF08918.10 GAJ46871.1 - 0.15 11.9 0.0 0.23 11.3 0.0 1.3 1 0 0 1 1 1 0 PhoQ Sensor DUF2482 PF10655.9 GAJ46871.1 - 0.16 12.5 0.0 0.24 11.9 0.0 1.3 1 0 0 1 1 1 0 Hypothetical protein of unknown function (DUF2482) YCII PF03795.14 GAJ46872.1 - 4.3e-12 46.3 0.0 6.8e-12 45.6 0.0 1.3 1 0 0 1 1 1 1 YCII-related domain DUF4440 PF14534.6 GAJ46872.1 - 1.3e-06 28.8 0.1 1.9e-05 25.0 0.1 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF4440) SnoaL_3 PF13474.6 GAJ46872.1 - 0.14 12.4 0.1 3.3 8.0 0.0 2.3 2 0 0 2 2 2 0 SnoaL-like domain PRiA4_ORF3 PF07929.11 GAJ46873.1 - 1.1e-15 57.8 0.1 1.3e-15 57.5 0.1 1.0 1 0 0 1 1 1 1 Plasmid pRiA4b ORF-3-like protein DUF3242 PF11586.8 GAJ46873.1 - 0.022 14.5 3.0 0.2 11.4 3.0 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF3242) MarR PF01047.22 GAJ46874.1 - 2.6e-12 46.5 0.3 5.4e-12 45.4 0.3 1.6 1 1 0 1 1 1 1 MarR family HTH_27 PF13463.6 GAJ46874.1 - 8.3e-10 39.0 0.0 1.2e-09 38.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.7 GAJ46874.1 - 1.6e-07 31.1 0.0 2.6e-07 30.4 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 GAJ46874.1 - 0.00025 20.9 0.1 0.00095 19.1 0.0 1.9 3 0 0 3 3 3 1 Crp-like helix-turn-helix domain HTH_24 PF13412.6 GAJ46874.1 - 0.0017 17.8 0.0 0.0045 16.5 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding PadR PF03551.14 GAJ46874.1 - 0.023 14.6 0.0 0.039 13.9 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family Rrf2 PF02082.20 GAJ46874.1 - 0.039 14.3 0.0 0.064 13.6 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator TFIIE_alpha PF02002.17 GAJ46874.1 - 0.06 13.2 0.2 0.1 12.5 0.2 1.5 1 1 0 1 1 1 0 TFIIE alpha subunit Fe_dep_repress PF01325.19 GAJ46874.1 - 0.066 13.4 0.0 0.1 12.8 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain MerR PF00376.23 GAJ46874.1 - 0.092 12.5 0.0 0.2 11.5 0.0 1.6 1 0 0 1 1 1 0 MerR family regulatory protein Phage_rep_O PF04492.13 GAJ46874.1 - 0.1 13.2 0.1 0.24 12.0 0.1 1.6 1 1 1 2 2 2 0 Bacteriophage replication protein O adh_short PF00106.25 GAJ46875.1 - 5.6e-51 172.8 1.5 6.8e-51 172.5 1.5 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 GAJ46875.1 - 7e-51 173.0 0.6 8e-51 172.8 0.6 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 GAJ46875.1 - 6.7e-13 48.9 0.3 1e-12 48.3 0.3 1.3 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 GAJ46875.1 - 4.9e-07 29.5 0.1 7.3e-07 28.9 0.1 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 GAJ46875.1 - 0.00027 20.9 0.1 0.00035 20.5 0.1 1.2 1 0 0 1 1 1 1 NAD(P)H-binding THF_DHG_CYH_C PF02882.19 GAJ46875.1 - 0.0025 17.2 0.0 0.0043 16.4 0.0 1.4 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Shikimate_DH PF01488.20 GAJ46875.1 - 0.066 13.3 1.3 0.17 12.0 0.6 2.0 1 1 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase adh_short PF00106.25 GAJ46876.1 - 2.1e-29 102.4 0.0 2.7e-29 102.0 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 GAJ46876.1 - 3.7e-20 72.5 0.0 4.5e-20 72.2 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase Epimerase PF01370.21 GAJ46876.1 - 8.7e-07 28.6 0.0 2.9e-05 23.7 0.0 2.0 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family KR PF08659.10 GAJ46876.1 - 5.7e-06 26.4 0.0 8.6e-06 25.8 0.0 1.2 1 0 0 1 1 1 1 KR domain 3Beta_HSD PF01073.19 GAJ46876.1 - 0.00037 19.6 0.1 0.0026 16.8 0.1 2.0 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.6 GAJ46876.1 - 0.00043 20.2 0.0 0.00076 19.4 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding Polysacc_synt_2 PF02719.15 GAJ46876.1 - 0.0094 15.1 0.0 0.016 14.4 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein GDP_Man_Dehyd PF16363.5 GAJ46876.1 - 0.016 14.7 0.0 0.02 14.3 0.0 1.2 1 0 0 1 1 1 0 GDP-mannose 4,6 dehydratase LDcluster4 PF18306.1 GAJ46876.1 - 0.15 11.6 0.0 0.23 11.0 0.0 1.3 1 0 0 1 1 1 0 SLOG cluster4 family NUDIX PF00293.28 GAJ46880.1 - 1.7e-15 57.3 0.0 2e-15 57.0 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.6 GAJ46880.1 - 0.00022 21.2 0.0 0.00029 20.8 0.0 1.3 1 1 0 1 1 1 1 NUDIX domain GrpB PF04229.14 GAJ46881.1 - 1.1e-39 136.2 0.0 1.9e-39 135.4 0.0 1.4 1 0 0 1 1 1 1 GrpB protein Acetyltransf_1 PF00583.25 GAJ46881.1 - 3.1e-09 37.1 0.5 2.1e-08 34.4 0.1 2.4 2 1 1 3 3 3 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 GAJ46881.1 - 5.7e-05 23.5 0.0 0.00015 22.1 0.0 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 GAJ46881.1 - 0.00061 19.7 0.0 0.0011 18.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Flp_C PF05202.12 GAJ46881.1 - 0.084 12.4 0.1 0.53 9.8 0.1 2.0 2 0 0 2 2 2 0 Recombinase Flp protein Acetyltransf_1 PF00583.25 GAJ46882.1 - 1.3e-15 57.6 0.3 5.7e-07 29.8 0.0 2.2 2 0 0 2 2 2 2 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 GAJ46882.1 - 4.9e-14 52.5 0.5 7.2e-06 26.3 0.0 2.2 2 0 0 2 2 2 2 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 GAJ46882.1 - 2.5e-10 40.4 0.0 0.0013 18.7 0.0 2.8 2 2 0 2 2 2 2 Acetyltransferase (GNAT) domain Acetyltransf_15 PF17013.5 GAJ46882.1 - 0.00059 19.4 0.2 0.1 12.0 0.1 2.1 2 0 0 2 2 2 2 Putative acetyl-transferase Acetyltransf_CG PF14542.6 GAJ46882.1 - 0.018 15.2 0.0 3.8 7.7 0.0 2.3 2 0 0 2 2 2 0 GCN5-related N-acetyl-transferase Glyoxalase PF00903.25 GAJ46883.1 - 9.2e-12 45.3 0.0 1.3e-11 44.8 0.0 1.2 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.7 GAJ46883.1 - 4.9e-06 26.5 0.0 7e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 Glyoxalase-like domain PAD_M PF08527.10 GAJ46883.1 - 0.034 13.8 0.0 0.061 13.0 0.0 1.4 1 0 0 1 1 1 0 Protein-arginine deiminase (PAD) middle domain Glyoxalase_6 PF18029.1 GAJ46883.1 - 0.041 14.7 0.0 0.27 12.0 0.0 1.9 1 1 0 1 1 1 0 Glyoxalase-like domain Cyclase PF04199.13 GAJ46884.1 - 1.1e-31 109.9 0.0 1.3e-31 109.6 0.0 1.1 1 0 0 1 1 1 1 Putative cyclase Inos-1-P_synth PF01658.17 GAJ46884.1 - 0.072 13.4 0.0 0.12 12.6 0.0 1.3 1 0 0 1 1 1 0 Myo-inositol-1-phosphate synthase AAA_28 PF13521.6 GAJ46885.1 - 2.3e-22 80.0 0.0 2.7e-22 79.8 0.0 1.0 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 GAJ46885.1 - 9.6e-06 26.2 0.1 1.8e-05 25.3 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 GAJ46885.1 - 0.016 15.7 0.0 0.41 11.1 0.0 2.1 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 GAJ46885.1 - 0.031 13.8 0.0 0.049 13.1 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_22 PF13401.6 GAJ46885.1 - 0.036 14.3 0.2 0.1 12.9 0.2 1.8 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 GAJ46885.1 - 0.045 14.1 0.0 0.064 13.6 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain RsmJ PF04378.13 GAJ46885.1 - 0.063 12.5 0.0 0.077 12.2 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA large subunit methyltransferase D, RlmJ G-alpha PF00503.20 GAJ46885.1 - 0.064 12.4 1.0 0.28 10.3 0.5 1.8 1 1 1 2 2 2 0 G-protein alpha subunit Herpes_Helicase PF02689.14 GAJ46885.1 - 0.082 10.8 0.0 0.12 10.3 0.0 1.2 1 0 0 1 1 1 0 Helicase AAA_2 PF07724.14 GAJ46885.1 - 0.09 12.9 0.0 0.2 11.7 0.0 1.5 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) TrwB_AAD_bind PF10412.9 GAJ46885.1 - 0.13 11.2 0.0 0.15 10.9 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain ATP_bind_2 PF03668.15 GAJ46885.1 - 0.14 11.4 0.0 0.21 10.9 0.0 1.2 1 0 0 1 1 1 0 P-loop ATPase protein family AAA_30 PF13604.6 GAJ46885.1 - 0.14 11.8 0.0 0.16 11.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 GAJ46885.1 - 0.15 12.6 0.0 0.17 12.4 0.0 1.3 1 0 0 1 1 1 0 ABC transporter AAA_33 PF13671.6 GAJ46885.1 - 0.18 11.9 0.0 0.24 11.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain Glyoxalase PF00903.25 GAJ46886.1 - 7.5e-08 32.6 0.2 8.9e-08 32.4 0.2 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LysE PF01810.18 GAJ46887.1 - 4.2e-26 91.6 13.8 5.3e-26 91.3 13.8 1.1 1 0 0 1 1 1 1 LysE type translocator TerC PF03741.16 GAJ46887.1 - 0.0019 17.9 8.5 0.0025 17.5 8.0 1.6 1 1 0 1 1 1 1 Integral membrane protein TerC family DUF373 PF04123.13 GAJ46887.1 - 0.046 13.2 9.3 0.055 12.9 9.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF373) Trp_oprn_chp PF09534.10 GAJ46887.1 - 0.061 13.1 6.0 0.012 15.5 2.6 1.6 2 0 0 2 2 2 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) UPF0220 PF05255.11 GAJ46887.1 - 0.067 12.7 4.5 0.079 12.5 1.8 2.1 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0220) PEMT PF04191.13 GAJ46887.1 - 0.68 10.4 6.9 0.23 11.9 0.7 2.8 1 1 2 3 3 3 0 Phospholipid methyltransferase DPM3 PF08285.11 GAJ46887.1 - 2 8.7 6.8 0.33 11.2 1.1 2.5 2 1 1 3 3 3 0 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) AsnC_trans_reg PF01037.21 GAJ46888.1 - 3.1e-14 52.7 0.0 5.5e-14 51.9 0.0 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 GAJ46888.1 - 1.8e-10 40.2 0.0 2.7e-10 39.6 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 GAJ46888.1 - 4.1e-09 36.1 0.3 6.1e-09 35.6 0.3 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR PF01047.22 GAJ46888.1 - 0.00037 20.3 0.0 0.00086 19.2 0.0 1.6 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 GAJ46888.1 - 0.00084 19.2 0.1 0.0015 18.4 0.1 1.4 1 0 0 1 1 1 1 MarR family LexA_DNA_bind PF01726.16 GAJ46888.1 - 0.0015 18.2 0.0 0.0029 17.3 0.0 1.4 1 0 0 1 1 1 1 LexA DNA binding domain HTH_5 PF01022.20 GAJ46888.1 - 0.0027 17.5 0.0 0.0054 16.6 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 GAJ46888.1 - 0.0035 17.2 0.1 0.0075 16.1 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 GAJ46888.1 - 0.0077 16.3 0.0 0.013 15.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.19 GAJ46888.1 - 0.011 15.9 0.0 0.021 15.0 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_IclR PF09339.10 GAJ46888.1 - 0.013 15.3 0.0 0.024 14.4 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_46 PF15977.5 GAJ46888.1 - 0.021 14.8 0.3 4.4 7.4 0.0 2.4 2 0 0 2 2 2 0 Winged helix-turn-helix DNA binding HTH_27 PF13463.6 GAJ46888.1 - 0.035 14.6 0.0 0.062 13.8 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain Ribosomal_S25 PF03297.15 GAJ46888.1 - 0.072 13.3 0.0 0.14 12.4 0.0 1.5 1 0 0 1 1 1 0 S25 ribosomal protein Rrf2 PF02082.20 GAJ46888.1 - 0.12 12.7 0.0 0.3 11.5 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator bVLRF1 PF18826.1 GAJ46888.1 - 0.12 12.2 0.0 0.95 9.3 0.0 1.9 1 1 1 2 2 2 0 bacteroidetes VLRF1 release factor HTH_10 PF04967.12 GAJ46888.1 - 0.13 12.1 0.1 0.25 11.2 0.1 1.4 1 0 0 1 1 1 0 HTH DNA binding domain HTH_11 PF08279.12 GAJ46888.1 - 0.13 12.2 0.0 0.26 11.3 0.0 1.4 1 0 0 1 1 1 0 HTH domain ABC_tran PF00005.27 GAJ46889.1 - 7.7e-09 36.2 0.0 1.1e-08 35.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 GAJ46889.1 - 5.3e-06 26.0 0.0 6e-06 25.9 0.0 1.1 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.6 GAJ46889.1 - 0.00073 19.7 0.1 0.0095 16.1 0.1 2.0 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_21 PF13304.6 GAJ46889.1 - 0.078 12.8 0.1 0.079 12.8 0.1 1.1 1 0 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system CobA_CobO_BtuR PF02572.15 GAJ46889.1 - 0.089 13.0 0.0 0.094 13.0 0.0 1.1 1 0 0 1 1 1 0 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Glyco_hydro_108 PF05838.12 GAJ46890.1 - 8.5e-23 80.6 0.0 1.1e-22 80.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase 108 PG_binding_3 PF09374.10 GAJ46890.1 - 0.046 14.0 0.0 0.085 13.1 0.0 1.4 1 0 0 1 1 1 0 Predicted Peptidoglycan domain UBA PF00627.31 GAJ46890.1 - 0.054 13.4 0.0 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 UBA/TS-N domain TBK1_CCD1 PF18394.1 GAJ46891.1 - 0.0032 17.1 0.4 0.0038 16.8 0.4 1.1 1 0 0 1 1 1 1 TANK-binding kinase 1 coiled-coil domain 1 JAKMIP_CC3 PF16034.5 GAJ46891.1 - 0.0067 16.4 0.3 0.0067 16.4 0.3 1.1 1 0 0 1 1 1 1 JAKMIP CC3 domain Med3 PF11593.8 GAJ46891.1 - 0.13 11.4 0.0 0.13 11.4 0.0 1.0 1 0 0 1 1 1 0 Mediator complex subunit 3 fungal Phage_GPD PF05954.11 GAJ46892.1 - 3.8e-08 33.0 0.0 3.8e-08 33.0 0.0 1.0 1 0 0 1 1 1 1 Phage late control gene D protein (GPD) RDM PF11002.8 GAJ46892.1 - 0.063 13.3 0.0 0.14 12.2 0.0 1.5 1 0 0 1 1 1 0 RFPL defining motif (RDM) Terminase_GpA PF05876.12 GAJ46893.1 - 1.1e-05 24.2 0.0 1.3e-05 24.0 0.0 1.0 1 0 0 1 1 1 1 Phage terminase large subunit (GpA) N6_N4_Mtase PF01555.18 GAJ46895.1 - 7.8e-25 87.9 0.1 1.9e-23 83.4 0.1 2.0 1 1 0 1 1 1 1 DNA methylase UPF0020 PF01170.18 GAJ46895.1 - 0.16 11.7 0.2 0.4 10.3 0.0 1.8 2 1 0 2 2 2 0 Putative RNA methylase family UPF0020 UBA_4 PF14555.6 GAJ46896.1 - 0.032 14.0 0.1 0.048 13.5 0.1 1.3 1 0 0 1 1 1 0 UBA-like domain APH PF01636.23 GAJ46898.1 - 2.5e-15 57.1 0.0 4.1e-15 56.4 0.0 1.3 1 1 0 1 1 1 1 Phosphotransferase enzyme family Choline_kinase PF01633.20 GAJ46898.1 - 7.2e-06 25.7 0.0 1.3e-05 24.9 0.0 1.3 1 0 0 1 1 1 1 Choline/ethanolamine kinase EcKinase PF02958.20 GAJ46898.1 - 0.0033 16.8 0.0 0.0046 16.3 0.0 1.2 1 0 0 1 1 1 1 Ecdysteroid kinase RIO1 PF01163.22 GAJ46898.1 - 0.0076 15.9 0.0 0.014 15.0 0.0 1.4 1 0 0 1 1 1 1 RIO1 family DUF4835 PF16119.5 GAJ46898.1 - 0.033 13.3 0.1 0.057 12.5 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4835) TIP41 PF04176.13 GAJ46900.1 - 0.05 13.1 0.0 0.056 12.9 0.0 1.1 1 0 0 1 1 1 0 TIP41-like family L51_S25_CI-B8 PF05047.16 GAJ46900.1 - 0.094 12.7 0.0 0.11 12.4 0.0 1.2 1 0 0 1 1 1 0 Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain ABC_tran PF00005.27 GAJ46902.1 - 6.9e-34 117.3 0.0 1.2e-33 116.5 0.0 1.4 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.23 GAJ46902.1 - 1.4e-20 74.1 19.8 2.1e-20 73.5 19.8 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region SMC_N PF02463.19 GAJ46902.1 - 9.3e-08 31.8 0.1 1.6e-07 31.0 0.1 1.3 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_5 PF07728.14 GAJ46902.1 - 0.0074 16.3 0.0 0.29 11.1 0.0 2.5 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) TrkA_N PF02254.18 GAJ46902.1 - 0.012 15.8 0.0 0.21 11.9 0.0 2.5 1 1 0 2 2 2 0 TrkA-N domain AAA_29 PF13555.6 GAJ46902.1 - 0.02 14.6 0.1 0.14 11.9 0.0 2.2 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_16 PF13191.6 GAJ46902.1 - 0.024 15.0 0.0 0.045 14.1 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain MMR_HSR1 PF01926.23 GAJ46902.1 - 0.029 14.5 0.0 0.075 13.1 0.0 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase PIRT PF15099.6 GAJ46902.1 - 0.043 13.4 0.2 0.043 13.4 0.2 1.7 2 0 0 2 2 2 0 Phosphoinositide-interacting protein family RsgA_GTPase PF03193.16 GAJ46902.1 - 0.1 12.5 0.0 0.21 11.5 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase adh_short_C2 PF13561.6 GAJ46903.1 - 3e-50 171.0 0.2 3.4e-50 170.8 0.2 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 GAJ46903.1 - 8.3e-48 162.4 0.3 1e-47 162.2 0.3 1.0 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 GAJ46903.1 - 1.3e-12 48.0 0.1 2e-12 47.4 0.1 1.3 1 1 0 1 1 1 1 KR domain Epimerase PF01370.21 GAJ46903.1 - 1.4e-06 28.0 0.4 3.1e-06 26.8 0.4 1.6 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 GAJ46903.1 - 0.002 18.1 0.1 0.003 17.5 0.1 1.4 1 1 0 1 1 1 1 NAD(P)H-binding Shikimate_DH PF01488.20 GAJ46903.1 - 0.01 15.9 0.0 0.018 15.1 0.0 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.6 GAJ46903.1 - 0.012 16.0 0.1 0.038 14.4 0.1 1.8 2 1 0 2 2 2 0 Putative NAD(P)-binding GDP_Man_Dehyd PF16363.5 GAJ46903.1 - 0.016 14.6 1.2 0.12 11.7 1.2 2.1 1 1 0 1 1 1 0 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 GAJ46903.1 - 0.039 13.0 0.0 0.058 12.5 0.0 1.3 1 0 0 1 1 1 0 RmlD substrate binding domain DUF5012 PF16404.5 GAJ46903.1 - 0.046 13.8 0.0 0.087 12.9 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF5012) NmrA PF05368.13 GAJ46903.1 - 0.056 13.0 0.1 0.098 12.2 0.1 1.3 1 0 0 1 1 1 0 NmrA-like family DUF2151 PF10221.9 GAJ46903.1 - 0.089 11.4 0.3 0.14 10.8 0.2 1.3 1 1 0 1 1 1 0 Cell cycle and development regulator THF_DHG_CYH_C PF02882.19 GAJ46903.1 - 0.11 11.8 0.0 0.2 10.9 0.0 1.4 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Holospora_elegans_E1-ASM64827v1/GCA_000648275.1_ASM64827v1_protein.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Holospora_elegans_E1-ASM64827v1/GCA_000648275.1_ASM64827v1_protein.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Holospora_elegans_E1-ASM64827v1/GCA_000648275.1_ASM64827v1_protein.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Holospora_elegans_E1-ASM64827v1/GCA_000648275.1_ASM64827v1_protein.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Sun Mar 24 02:33:59 2019 # [ok]