# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Bac_DnaA PF00308.13 gi|89255450|ref|YP_512811.1| - 9.4e-89 296.7 0.4 9.4e-89 296.7 0.3 1.8 2 0 0 2 2 2 1 Bacterial dnaA protein Bac_DnaA_C PF08299.6 gi|89255450|ref|YP_512811.1| - 6.1e-31 106.0 0.2 1.6e-30 104.7 0.2 1.8 1 0 0 1 1 1 1 Bacterial dnaA protein helix-turn-helix IstB_IS21 PF01695.12 gi|89255450|ref|YP_512811.1| - 4.8e-12 45.6 0.0 1e-11 44.6 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein DnaA_N PF11638.3 gi|89255450|ref|YP_512811.1| - 6.6e-12 44.8 2.0 1.9e-11 43.3 0.6 2.2 2 0 0 2 2 2 1 DnaA N-terminal domain AAA PF00004.24 gi|89255450|ref|YP_512811.1| - 2.2e-07 31.1 0.0 6.8e-07 29.5 0.0 1.9 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|89255450|ref|YP_512811.1| - 6e-06 26.1 2.0 8e-06 25.7 0.1 2.2 2 1 1 3 3 3 1 Archaeal ATPase AFG1_ATPase PF03969.11 gi|89255450|ref|YP_512811.1| - 0.00033 19.5 0.6 0.34 9.6 0.0 2.2 1 1 0 2 2 2 2 AFG1-like ATPase AAA_22 PF13401.1 gi|89255450|ref|YP_512811.1| - 0.00037 20.6 1.0 0.021 14.9 0.1 3.3 2 1 1 3 3 3 1 AAA domain RNA_helicase PF00910.17 gi|89255450|ref|YP_512811.1| - 0.0016 18.5 0.1 0.0084 16.2 0.1 2.3 1 1 0 1 1 1 1 RNA helicase AAA_21 PF13304.1 gi|89255450|ref|YP_512811.1| - 0.013 15.4 0.4 0.013 15.4 0.2 2.2 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|89255450|ref|YP_512811.1| - 0.019 15.7 0.0 0.061 14.1 0.0 2.1 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|89255450|ref|YP_512811.1| - 0.066 12.8 0.0 0.17 11.4 0.0 1.8 1 0 0 1 1 1 0 NACHT domain AAA_16 PF13191.1 gi|89255450|ref|YP_512811.1| - 0.11 12.4 0.0 0.5 10.3 0.0 1.9 1 1 1 2 2 2 0 AAA ATPase domain AAA_19 PF13245.1 gi|89255450|ref|YP_512811.1| - 0.13 11.9 0.0 0.38 10.5 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain DNA_pol3_beta_2 PF02767.11 gi|89255451|ref|YP_512812.1| - 8.9e-38 128.8 1.5 1.6e-32 111.9 0.0 3.3 3 0 0 3 3 3 2 DNA polymerase III beta subunit, central domain DNA_pol3_beta PF00712.14 gi|89255451|ref|YP_512812.1| - 5.4e-30 103.7 11.5 4.3e-25 87.9 2.7 3.0 3 0 0 3 3 3 2 DNA polymerase III beta subunit, N-terminal domain DNA_pol3_beta_3 PF02768.10 gi|89255451|ref|YP_512812.1| - 2.5e-29 101.3 12.3 3.7e-29 100.7 1.8 2.6 2 0 0 2 2 2 2 DNA polymerase III beta subunit, C-terminal domain Fimbrial_CS1 PF04449.7 gi|89255451|ref|YP_512812.1| - 0.12 12.4 0.2 0.12 12.4 0.1 2.3 3 0 0 3 3 3 0 CS1 type fimbrial major subunit MFS_1 PF07690.11 gi|89255452|ref|YP_512813.1| - 3e-08 32.7 14.5 3.4e-08 32.5 10.0 1.0 1 0 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|89255452|ref|YP_512813.1| - 2.5e-05 23.0 15.6 3e-05 22.8 10.8 1.1 1 0 0 1 1 1 1 Sugar (and other) transporter YfhO PF09586.5 gi|89255452|ref|YP_512813.1| - 1.3 6.9 16.8 1.5 6.6 11.7 1.0 1 0 0 1 1 1 0 Bacterial membrane protein YfhO DDE_3 PF13358.1 gi|89255453|ref|YP_512814.1| - 5.3e-31 107.3 0.0 9e-31 106.5 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.11 gi|89255453|ref|YP_512814.1| - 1.6e-07 31.0 0.2 1.1e-06 28.3 0.1 2.1 2 0 0 2 2 2 1 Transposase DDE_1 PF03184.14 gi|89255453|ref|YP_512814.1| - 6e-07 28.8 0.1 9.5e-07 28.1 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_28 PF13518.1 gi|89255453|ref|YP_512814.1| - 0.00058 19.8 0.0 0.0018 18.2 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain rve PF00665.21 gi|89255453|ref|YP_512814.1| - 0.00072 19.6 0.0 0.0013 18.7 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.1 gi|89255453|ref|YP_512814.1| - 0.0087 15.6 0.0 0.029 14.0 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.1 gi|89255453|ref|YP_512814.1| - 0.02 15.0 0.0 0.032 14.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix DDE_Tnp_ISAZ013 PF07592.6 gi|89255453|ref|YP_512814.1| - 0.041 12.6 0.7 0.32 9.7 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain CENP-B_N PF04218.8 gi|89255453|ref|YP_512814.1| - 0.069 12.5 0.0 0.7 9.3 0.0 2.5 3 0 0 3 3 3 0 CENP-B N-terminal DNA-binding domain Na_H_Exchanger PF00999.16 gi|89255454|ref|YP_512815.1| - 2.2e-21 75.8 17.9 2.4e-21 75.7 12.4 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TPP_enzyme_C PF02775.16 gi|89255455|ref|YP_512816.1| - 9e-27 93.5 0.0 1.3e-24 86.4 0.0 2.4 2 1 0 2 2 2 2 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|89255455|ref|YP_512816.1| - 6.1e-17 61.6 0.0 1.7e-16 60.1 0.0 1.8 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain DUF2650 PF10853.3 gi|89255456|ref|YP_512817.1| - 0.011 15.1 1.8 0.014 14.8 1.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2650) Peptidase_C1 PF00112.18 gi|89255456|ref|YP_512817.1| - 0.035 13.9 0.1 0.035 13.9 0.1 1.1 1 0 0 1 1 1 0 Papain family cysteine protease Peptidase_S49 PF01343.13 gi|89255457|ref|YP_512818.1| - 6.2e-36 123.5 0.0 1.3e-35 122.4 0.0 1.6 2 0 0 2 2 2 1 Peptidase family S49 CLP_protease PF00574.18 gi|89255457|ref|YP_512818.1| - 6.4e-08 32.4 0.9 7.5e-07 28.9 0.3 2.1 2 0 0 2 2 2 1 Clp protease OmpH PF03938.9 gi|89255458|ref|YP_512819.1| - 1e-21 77.5 20.7 1.2e-21 77.2 14.4 1.0 1 0 0 1 1 1 1 Outer membrane protein (OmpH-like) DUF342 PF03961.8 gi|89255458|ref|YP_512819.1| - 0.00086 17.8 2.3 0.0009 17.7 1.6 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF342) Alpha-2-MRAP_C PF06401.6 gi|89255458|ref|YP_512819.1| - 0.024 14.4 5.1 0.033 14.0 3.5 1.2 1 0 0 1 1 1 0 Alpha-2-macroglobulin RAP, C-terminal domain CENP-Q PF13094.1 gi|89255458|ref|YP_512819.1| - 0.041 13.9 10.5 0.054 13.5 7.3 1.1 1 0 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit FliT PF05400.8 gi|89255458|ref|YP_512819.1| - 0.11 12.9 6.6 0.42 11.0 0.2 2.4 2 0 0 2 2 2 0 Flagellar protein FliT IncA PF04156.9 gi|89255458|ref|YP_512819.1| - 0.11 12.0 7.1 0.18 11.3 5.0 1.4 1 1 0 1 1 1 0 IncA protein BEX PF04538.7 gi|89255458|ref|YP_512819.1| - 0.18 12.0 4.1 0.27 11.4 2.8 1.3 1 0 0 1 1 1 0 Brain expressed X-linked like family Uds1 PF15456.1 gi|89255458|ref|YP_512819.1| - 0.23 11.4 6.0 0.35 10.8 4.2 1.2 1 0 0 1 1 1 0 Up-regulated During Septation Vfa1 PF08432.5 gi|89255458|ref|YP_512819.1| - 0.27 11.2 13.8 0.37 10.7 9.5 1.2 1 0 0 1 1 1 0 AAA-ATPase Vps4-associated protein 1 DUF3373 PF11853.3 gi|89255458|ref|YP_512819.1| - 0.34 9.4 8.7 0.41 9.1 6.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3373) TK PF00265.13 gi|89255458|ref|YP_512819.1| - 0.35 10.4 3.2 0.54 9.8 2.2 1.3 1 0 0 1 1 1 0 Thymidine kinase Adaptin_binding PF10199.4 gi|89255458|ref|YP_512819.1| - 0.5 10.6 10.6 0.65 10.2 7.3 1.2 1 0 0 1 1 1 0 Alpha and gamma adaptin binding protein p34 AAA_13 PF13166.1 gi|89255458|ref|YP_512819.1| - 0.54 8.6 11.9 0.68 8.3 8.3 1.0 1 0 0 1 1 1 0 AAA domain LMBR1 PF04791.11 gi|89255458|ref|YP_512819.1| - 0.61 8.5 3.9 0.72 8.3 2.7 1.1 1 0 0 1 1 1 0 LMBR1-like membrane protein Atg14 PF10186.4 gi|89255458|ref|YP_512819.1| - 0.9 8.4 6.1 1.2 8.0 4.2 1.2 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 DivIVA PF05103.8 gi|89255458|ref|YP_512819.1| - 3.3 7.7 16.6 7.1 6.6 11.5 1.6 1 1 0 1 1 1 0 DivIVA protein Tom37_C PF11801.3 gi|89255458|ref|YP_512819.1| - 3.6 7.4 8.3 4.5 7.0 5.7 1.2 1 0 0 1 1 1 0 Tom37 C-terminal domain Spc7 PF08317.6 gi|89255458|ref|YP_512819.1| - 5.1 5.6 14.6 11 4.6 4.3 2.0 1 1 1 2 2 2 0 Spc7 kinetochore protein DUF972 PF06156.8 gi|89255458|ref|YP_512819.1| - 6 7.2 9.2 11 6.4 6.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF972) V_ATPase_I PF01496.14 gi|89255458|ref|YP_512819.1| - 7.9 4.2 9.2 18 3.0 6.4 1.5 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family Striatin PF08232.7 gi|89255458|ref|YP_512819.1| - 8.3 6.7 10.5 11 6.3 7.3 1.3 1 0 0 1 1 1 0 Striatin family Rhodanese PF00581.15 gi|89255459|ref|YP_512820.1| - 9.3e-13 48.5 0.1 1.2e-12 48.1 0.1 1.2 1 0 0 1 1 1 1 Rhodanese-like domain SecB PF02556.9 gi|89255460|ref|YP_512821.1| - 3e-50 169.6 0.4 3.4e-50 169.4 0.3 1.0 1 0 0 1 1 1 1 Preprotein translocase subunit SecB RecA PF00154.16 gi|89255461|ref|YP_512822.1| - 3.5e-170 565.2 4.8 4.2e-170 564.9 3.3 1.0 1 0 0 1 1 1 1 recA bacterial DNA recombination protein Rad51 PF08423.6 gi|89255461|ref|YP_512822.1| - 1.8e-08 33.6 0.3 6e-08 31.9 0.2 1.6 1 1 0 1 1 1 1 Rad51 KaiC PF06745.8 gi|89255461|ref|YP_512822.1| - 3e-08 33.0 2.0 2e-06 27.1 1.3 2.7 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|89255461|ref|YP_512822.1| - 4e-06 26.3 0.3 8.2e-06 25.3 0.2 1.4 1 1 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|89255461|ref|YP_512822.1| - 0.006 16.3 0.2 0.022 14.4 0.0 1.9 2 0 0 2 2 2 1 Archaeal ATPase AAA_16 PF13191.1 gi|89255461|ref|YP_512822.1| - 0.022 14.7 0.0 0.04 13.8 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain AAA_24 PF13479.1 gi|89255461|ref|YP_512822.1| - 0.029 13.9 0.0 0.054 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain RecX PF02631.11 gi|89255462|ref|YP_512823.1| - 5.6e-27 94.3 0.3 7.4e-27 93.9 0.2 1.2 1 0 0 1 1 1 1 RecX family SMC_Nse1 PF07574.8 gi|89255462|ref|YP_512823.1| - 0.041 13.5 0.3 0.11 12.1 0.1 1.8 2 0 0 2 2 2 0 Nse1 non-SMC component of SMC5-6 complex Transposase_mut PF00872.13 gi|89255462|ref|YP_512823.1| - 0.075 11.5 0.0 0.11 11.0 0.0 1.1 1 0 0 1 1 1 0 Transposase, Mutator family SSB PF00436.20 gi|89255463|ref|YP_512824.1| - 4e-34 116.5 2.0 4e-34 116.5 1.4 1.5 2 0 0 2 2 2 1 Single-strand binding protein family DUF3217 PF11506.3 gi|89255463|ref|YP_512824.1| - 0.055 13.1 0.0 0.072 12.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3217) HMG-CoA_red PF00368.13 gi|89255463|ref|YP_512824.1| - 0.081 11.5 0.1 0.1 11.2 0.1 1.1 1 0 0 1 1 1 0 Hydroxymethylglutaryl-coenzyme A reductase Acetate_kinase PF00871.12 gi|89255464|ref|YP_512825.1| - 2.7e-142 473.9 6.1 3e-142 473.7 4.3 1.0 1 0 0 1 1 1 1 Acetokinase family DUF2680 PF10925.3 gi|89255464|ref|YP_512825.1| - 0.039 13.8 0.0 9.1 6.2 0.0 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2680) PTA_PTB PF01515.14 gi|89255465|ref|YP_512826.1| - 5.5e-119 396.9 1.7 8.1e-119 396.3 1.2 1.2 1 0 0 1 1 1 1 Phosphate acetyl/butaryl transferase DRTGG PF07085.7 gi|89255465|ref|YP_512826.1| - 7.2e-20 70.5 2.5 2.7e-19 68.7 1.1 2.4 2 0 0 2 2 2 1 DRTGG domain AAA_26 PF13500.1 gi|89255465|ref|YP_512826.1| - 6.4e-08 32.4 1.3 0.00055 19.6 0.1 2.8 2 1 1 3 3 3 2 AAA domain DDE_3 PF13358.1 gi|89255466|ref|YP_512827.1| - 1.7e-31 108.9 0.0 2.8e-31 108.2 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.11 gi|89255466|ref|YP_512827.1| - 1.5e-07 31.0 0.2 1.1e-06 28.3 0.1 2.1 2 0 0 2 2 2 1 Transposase DDE_1 PF03184.14 gi|89255466|ref|YP_512827.1| - 5.8e-07 28.8 0.1 9.5e-07 28.1 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_28 PF13518.1 gi|89255466|ref|YP_512827.1| - 0.00058 19.8 0.0 0.0018 18.2 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain rve PF00665.21 gi|89255466|ref|YP_512827.1| - 0.00072 19.6 0.0 0.0013 18.7 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.1 gi|89255466|ref|YP_512827.1| - 0.0087 15.6 0.0 0.029 14.0 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.1 gi|89255466|ref|YP_512827.1| - 0.02 15.0 0.0 0.032 14.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix DDE_Tnp_ISAZ013 PF07592.6 gi|89255466|ref|YP_512827.1| - 0.039 12.6 0.6 0.32 9.7 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain Glyco_transf_4 PF13439.1 gi|89255467|ref|YP_512828.1| - 0.00066 19.4 0.1 0.001 18.8 0.1 1.3 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_transf_5 PF08323.6 gi|89255467|ref|YP_512828.1| - 0.018 14.5 0.7 0.088 12.2 0.3 1.9 1 1 1 2 2 2 0 Starch synthase catalytic domain Glyco_trans_4_2 PF13477.1 gi|89255467|ref|YP_512828.1| - 0.061 13.1 1.5 0.85 9.4 1.0 2.0 1 1 0 1 1 1 0 Glycosyl transferase 4-like Glyco_trans_4_4 PF13579.1 gi|89255467|ref|YP_512828.1| - 0.076 13.1 0.0 0.53 10.4 0.0 2.0 1 1 0 1 1 1 0 Glycosyl transferase 4-like domain tRNA-synt_2 PF00152.15 gi|89255468|ref|YP_512829.1| - 1.7e-128 428.1 0.1 2e-128 427.8 0.1 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) GAD PF02938.9 gi|89255468|ref|YP_512829.1| - 3.4e-25 88.0 0.1 6e-25 87.2 0.0 1.4 1 0 0 1 1 1 1 GAD domain tRNA_anti-codon PF01336.20 gi|89255468|ref|YP_512829.1| - 1.6e-18 66.3 0.4 3.2e-18 65.3 0.3 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.15 gi|89255468|ref|YP_512829.1| - 3.5e-06 26.4 2.3 0.0028 16.8 0.2 2.7 3 0 0 3 3 3 2 tRNA synthetases class II core domain (F) tRNA-synt_2b PF00587.20 gi|89255468|ref|YP_512829.1| - 0.00019 21.0 0.1 0.042 13.4 0.1 2.4 2 0 0 2 2 2 2 tRNA synthetase class II core domain (G, H, P, S and T) MFS_1 PF07690.11 gi|89255469|ref|YP_512830.1| - 1e-24 86.9 46.8 1e-24 86.9 32.0 1.3 1 1 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|89255469|ref|YP_512830.1| - 1e-14 53.9 44.8 6.4e-12 44.7 31.1 2.0 1 1 0 1 1 1 1 Sugar (and other) transporter MFS_2 PF13347.1 gi|89255469|ref|YP_512830.1| - 0.051 11.9 38.0 0.084 11.2 16.4 2.3 1 1 1 2 2 2 0 MFS/sugar transport protein DDE_3 PF13358.1 gi|89255470|ref|YP_512831.1| - 5.3e-31 107.3 0.0 9e-31 106.5 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.11 gi|89255470|ref|YP_512831.1| - 1.6e-07 31.0 0.2 1.1e-06 28.3 0.1 2.1 2 0 0 2 2 2 1 Transposase DDE_1 PF03184.14 gi|89255470|ref|YP_512831.1| - 6e-07 28.8 0.1 9.5e-07 28.1 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_28 PF13518.1 gi|89255470|ref|YP_512831.1| - 0.00058 19.8 0.0 0.0018 18.2 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain rve PF00665.21 gi|89255470|ref|YP_512831.1| - 0.00072 19.6 0.0 0.0013 18.7 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.1 gi|89255470|ref|YP_512831.1| - 0.0087 15.6 0.0 0.029 14.0 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.1 gi|89255470|ref|YP_512831.1| - 0.02 15.0 0.0 0.032 14.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix DDE_Tnp_ISAZ013 PF07592.6 gi|89255470|ref|YP_512831.1| - 0.041 12.6 0.7 0.32 9.7 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain CENP-B_N PF04218.8 gi|89255470|ref|YP_512831.1| - 0.069 12.5 0.0 0.7 9.3 0.0 2.5 3 0 0 3 3 3 0 CENP-B N-terminal DNA-binding domain Trp_Tyr_perm PF03222.8 gi|89255471|ref|YP_512832.1| - 1.8e-22 79.6 35.7 2.3e-22 79.3 24.8 1.0 1 0 0 1 1 1 1 Tryptophan/tyrosine permease family Aa_trans PF01490.13 gi|89255471|ref|YP_512832.1| - 4.1e-07 28.8 41.7 1.3e-05 23.9 17.7 2.3 2 1 0 2 2 2 2 Transmembrane amino acid transporter protein AA_permease_2 PF13520.1 gi|89255471|ref|YP_512832.1| - 0.00059 18.5 52.5 0.0026 16.3 36.4 1.8 1 1 0 1 1 1 1 Amino acid permease ATP1G1_PLM_MAT8 PF02038.11 gi|89255471|ref|YP_512832.1| - 0.015 14.2 0.3 0.015 14.2 0.2 4.7 7 0 0 7 7 7 0 ATP1G1/PLM/MAT8 family Dabb PF07876.7 gi|89255472|ref|YP_512833.1| - 1.4e-10 41.4 0.0 1.6e-10 41.3 0.0 1.0 1 0 0 1 1 1 1 Stress responsive A/B Barrel Domain NAD_binding_2 PF03446.10 gi|89255473|ref|YP_512834.1| - 1.4e-19 70.4 0.0 1.6e-19 70.3 0.0 1.0 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Shikimate_DH PF01488.15 gi|89255473|ref|YP_512834.1| - 3.1e-11 43.5 0.0 9.1e-11 41.9 0.0 1.7 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.12 gi|89255473|ref|YP_512834.1| - 1.7e-10 41.1 0.0 1.9e-10 41.0 0.0 1.1 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|89255473|ref|YP_512834.1| - 6.3e-08 31.9 0.0 6.6e-08 31.9 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|89255473|ref|YP_512834.1| - 0.00045 19.9 0.1 0.0012 18.5 0.0 1.6 1 1 1 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IlvN PF07991.7 gi|89255473|ref|YP_512834.1| - 0.00045 19.6 0.0 0.00049 19.4 0.0 1.0 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain OCD_Mu_crystall PF02423.10 gi|89255473|ref|YP_512834.1| - 0.00087 18.1 0.0 0.00097 17.9 0.0 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family TrkA_N PF02254.13 gi|89255473|ref|YP_512834.1| - 0.0027 17.6 0.4 0.017 15.1 0.3 1.9 1 1 0 1 1 1 1 TrkA-N domain ApbA PF02558.11 gi|89255473|ref|YP_512834.1| - 0.0034 16.8 0.1 0.0052 16.2 0.0 1.4 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Saccharop_dh PF03435.13 gi|89255473|ref|YP_512834.1| - 0.011 14.6 0.0 0.011 14.6 0.0 1.1 1 0 0 1 1 1 0 Saccharopine dehydrogenase UDPG_MGDP_dh_C PF03720.10 gi|89255473|ref|YP_512834.1| - 0.015 15.4 0.0 0.019 15.1 0.0 1.2 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_binding_7 PF13241.1 gi|89255473|ref|YP_512834.1| - 0.027 14.7 0.0 0.031 14.5 0.0 1.1 1 0 0 1 1 1 0 Putative NAD(P)-binding NAD_binding_10 PF13460.1 gi|89255473|ref|YP_512834.1| - 0.029 14.3 0.0 0.03 14.3 0.0 1.1 1 0 0 1 1 1 0 NADH(P)-binding Semialdhyde_dh PF01118.19 gi|89255473|ref|YP_512834.1| - 0.039 14.2 0.1 0.075 13.3 0.1 1.5 1 1 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain ThiF PF00899.16 gi|89255473|ref|YP_512834.1| - 0.05 13.4 2.0 0.12 12.1 0.2 2.0 1 1 1 2 2 2 0 ThiF family NAD_binding_4 PF07993.7 gi|89255473|ref|YP_512834.1| - 0.084 11.7 0.0 0.091 11.6 0.0 1.0 1 0 0 1 1 1 0 Male sterility protein GFO_IDH_MocA PF01408.17 gi|89255473|ref|YP_512834.1| - 0.09 13.3 0.0 0.11 13.0 0.0 1.1 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold eIF-1a PF01176.14 gi|89255473|ref|YP_512834.1| - 0.099 12.0 0.0 0.14 11.6 0.0 1.2 1 0 0 1 1 1 0 Translation initiation factor 1A / IF-1 NAD_binding_11 PF14833.1 gi|89255474|ref|YP_512835.1| - 3e-12 46.6 0.0 3.8e-12 46.3 0.0 1.1 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NAD_binding_2 PF03446.10 gi|89255474|ref|YP_512835.1| - 0.16 11.7 0.0 0.43 10.4 0.0 1.6 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase OTCace_N PF02729.16 gi|89255475|ref|YP_512836.1| - 6.5e-46 155.5 0.0 1e-45 154.8 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.19 gi|89255475|ref|YP_512836.1| - 2.7e-27 95.5 0.0 5.9e-27 94.4 0.0 1.5 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HSBP1 PF06825.7 gi|89255475|ref|YP_512836.1| - 0.019 14.5 0.1 0.051 13.1 0.0 1.7 1 0 0 1 1 1 0 Heat shock factor binding protein 1 CPSase_L_D2 PF02786.12 gi|89255476|ref|YP_512837.1| - 9.3e-108 358.3 1.4 2.3e-70 236.1 0.1 2.3 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_4 PF13535.1 gi|89255476|ref|YP_512837.1| - 1.7e-43 148.4 0.0 1.2e-20 74.0 0.0 2.3 2 0 0 2 2 2 2 ATP-grasp domain CPSase_L_chain PF00289.17 gi|89255476|ref|YP_512837.1| - 1.1e-42 144.5 0.0 1e-21 77.0 0.0 2.5 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, N-terminal domain CPSase_L_D3 PF02787.14 gi|89255476|ref|YP_512837.1| - 1.8e-40 137.5 0.4 7.9e-40 135.4 0.0 2.4 3 0 0 3 3 3 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATPgrasp_Ter PF15632.1 gi|89255476|ref|YP_512837.1| - 7.1e-27 94.0 0.1 1.6e-15 56.7 0.1 3.7 3 1 0 3 3 3 3 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp PF02222.17 gi|89255476|ref|YP_512837.1| - 3e-16 59.2 0.1 2.4e-08 33.5 0.0 2.4 2 0 0 2 2 2 2 ATP-grasp domain MGS PF02142.17 gi|89255476|ref|YP_512837.1| - 5.1e-16 58.3 0.7 4e-15 55.5 0.1 2.8 3 1 1 4 4 4 1 MGS-like domain ATP-grasp_3 PF02655.9 gi|89255476|ref|YP_512837.1| - 2.5e-15 56.7 2.2 3.1e-10 40.1 0.1 2.6 2 0 0 2 2 2 2 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|89255476|ref|YP_512837.1| - 4e-14 52.4 1.2 1.7e-08 34.0 0.1 2.6 2 0 0 2 2 2 2 D-ala D-ala ligase C-terminus ATP-grasp_2 PF08442.5 gi|89255476|ref|YP_512837.1| - 2.7e-05 23.6 0.1 0.0029 17.0 0.0 2.8 2 0 0 2 2 2 1 ATP-grasp domain HTH_23 PF13384.1 gi|89255476|ref|YP_512837.1| - 0.075 12.7 0.1 4.7 6.9 0.0 3.3 3 0 0 3 3 3 0 Homeodomain-like domain CPSase_sm_chain PF00988.17 gi|89255477|ref|YP_512838.1| - 5.2e-53 178.0 0.0 1e-52 177.1 0.0 1.4 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.23 gi|89255477|ref|YP_512838.1| - 1.7e-46 158.0 0.0 5.3e-46 156.5 0.0 1.7 2 0 0 2 2 2 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|89255477|ref|YP_512838.1| - 1.2e-09 37.9 0.1 1.9e-05 24.2 0.0 2.5 1 1 1 2 2 2 2 Peptidase C26 DJ-1_PfpI PF01965.19 gi|89255477|ref|YP_512838.1| - 0.0027 17.1 0.0 0.006 16.0 0.0 1.5 1 0 0 1 1 1 1 DJ-1/PfpI family His_Phos_2 PF00328.17 gi|89255478|ref|YP_512839.1| - 9.6e-35 120.5 0.0 1.8e-34 119.5 0.0 1.4 1 1 0 1 1 1 1 Histidine phosphatase superfamily (branch 2) TPMT PF05724.6 gi|89255479|ref|YP_512840.1| - 1.5e-44 152.0 0.0 1.7e-44 151.8 0.0 1.0 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) Methyltransf_18 PF12847.2 gi|89255479|ref|YP_512840.1| - 0.0028 18.2 0.0 0.0045 17.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|89255479|ref|YP_512840.1| - 0.0041 16.7 1.0 0.026 14.1 0.7 2.0 1 1 0 1 1 1 1 Methyltransferase domain Amidohydro_4 PF13147.1 gi|89255480|ref|YP_512841.1| - 6.7e-24 85.3 0.0 1.9e-23 83.9 0.0 1.6 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|89255480|ref|YP_512841.1| - 5.7e-15 55.7 0.9 1e-13 51.6 0.6 2.1 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|89255480|ref|YP_512841.1| - 2.2e-12 46.5 0.1 5.8e-12 45.2 0.1 1.7 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|89255480|ref|YP_512841.1| - 0.00075 18.8 0.1 0.0016 17.7 0.0 1.6 2 0 0 2 2 2 1 Amidohydrolase family DUF4325 PF14213.1 gi|89255481|ref|YP_512842.1| - 1.2e-17 63.3 1.8 1.2e-17 63.3 1.2 2.8 3 0 0 3 3 3 1 Domain of unknown function (DUF4325) HATPase_c PF02518.21 gi|89255481|ref|YP_512842.1| - 0.00014 21.5 0.1 0.00036 20.2 0.0 1.7 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HTH_11 PF08279.7 gi|89255481|ref|YP_512842.1| - 0.002 17.7 0.1 0.0083 15.7 0.0 2.1 1 0 0 1 1 1 1 HTH domain HTH_22 PF13309.1 gi|89255481|ref|YP_512842.1| - 0.019 14.7 0.1 0.072 12.8 0.0 2.1 2 0 0 2 2 2 0 HTH domain Mga PF05043.8 gi|89255481|ref|YP_512842.1| - 0.026 14.7 2.6 1.5 9.1 1.1 2.6 2 0 0 2 2 2 0 Mga helix-turn-helix domain TrmB PF01978.14 gi|89255481|ref|YP_512842.1| - 0.03 14.0 0.1 0.13 12.0 0.0 2.1 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB GntR PF00392.16 gi|89255481|ref|YP_512842.1| - 0.052 13.0 0.0 3.6 7.0 0.0 2.8 3 0 0 3 3 3 0 Bacterial regulatory proteins, gntR family DUF2363 PF10155.4 gi|89255481|ref|YP_512842.1| - 0.055 13.4 0.6 0.055 13.4 0.4 2.1 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2363) HTH_23 PF13384.1 gi|89255481|ref|YP_512842.1| - 0.07 12.8 0.0 0.21 11.2 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain HTH_7 PF02796.10 gi|89255481|ref|YP_512842.1| - 0.088 12.6 0.0 0.34 10.7 0.0 2.0 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_24 PF13412.1 gi|89255481|ref|YP_512842.1| - 0.094 12.1 4.5 0.15 11.4 0.0 3.2 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding HTH_Tnp_4 PF13613.1 gi|89255481|ref|YP_512842.1| - 0.094 12.2 0.0 0.83 9.2 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix of DDE superfamily endonuclease DUF1415 PF07209.7 gi|89255483|ref|YP_512844.1| - 2.6e-73 245.4 0.8 2.9e-73 245.2 0.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1415) FUSC_2 PF13515.1 gi|89255484|ref|YP_512845.1| - 3.2e-17 62.6 40.5 7.4e-11 42.0 11.9 2.3 2 0 0 2 2 2 2 Fusaric acid resistance protein-like FUSC PF04632.7 gi|89255484|ref|YP_512845.1| - 7.6e-11 41.1 32.3 1.1e-07 30.7 7.9 2.0 1 1 1 2 2 2 2 Fusaric acid resistance protein family DUF939 PF06081.6 gi|89255484|ref|YP_512845.1| - 8.5e-06 25.6 37.3 0.00093 19.0 10.2 3.5 3 1 0 3 3 3 2 Bacterial protein of unknown function (DUF939) HlyD_2 PF12700.2 gi|89255485|ref|YP_512846.1| - 2.5e-18 66.3 11.7 3.7e-18 65.7 8.1 1.2 1 0 0 1 1 1 1 HlyD family secretion protein HlyD PF00529.15 gi|89255485|ref|YP_512846.1| - 4.8e-17 62.2 0.0 6e-17 61.8 0.0 1.1 1 0 0 1 1 1 1 HlyD family secretion protein HlyD_3 PF13437.1 gi|89255485|ref|YP_512846.1| - 2.7e-16 59.8 0.3 1.5e-12 47.8 0.1 2.5 2 0 0 2 2 2 2 HlyD family secretion protein Biotin_lipoyl_2 PF13533.1 gi|89255485|ref|YP_512846.1| - 1.1e-11 44.1 0.1 1.4e-07 31.0 0.0 2.6 2 0 0 2 2 2 2 Biotin-lipoyl like Biotin_lipoyl PF00364.17 gi|89255485|ref|YP_512846.1| - 8.4e-07 28.5 0.1 0.0033 17.0 0.0 2.7 2 0 0 2 2 2 2 Biotin-requiring enzyme FtsH_ext PF06480.10 gi|89255485|ref|YP_512846.1| - 0.00061 19.9 0.2 0.00061 19.9 0.2 1.8 2 1 0 2 2 2 1 FtsH Extracellular PTS_EIIA_1 PF00358.15 gi|89255485|ref|YP_512846.1| - 0.061 12.8 0.2 1.2 8.7 0.0 2.3 2 0 0 2 2 2 0 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 PASTA PF03793.14 gi|89255485|ref|YP_512846.1| - 0.069 12.8 0.0 0.25 10.9 0.0 1.9 2 0 0 2 2 2 0 PASTA domain OEP PF02321.13 gi|89255485|ref|YP_512846.1| - 0.13 11.8 4.9 0.18 11.3 3.4 1.2 1 0 0 1 1 1 0 Outer membrane efflux protein DUF3568 PF12092.3 gi|89255486|ref|YP_512847.1| - 1.1e-39 135.2 5.7 1.3e-39 134.9 3.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3568) LysR_substrate PF03466.15 gi|89255487|ref|YP_512848.1| - 1e-18 67.2 0.0 1.5e-18 66.6 0.0 1.1 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.22 gi|89255487|ref|YP_512848.1| - 4.7e-15 55.0 0.1 8.5e-15 54.2 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family SOUL PF04832.7 gi|89255488|ref|YP_512849.1| - 1.6e-36 125.5 1.3 2e-36 125.1 0.9 1.2 1 1 0 1 1 1 1 SOUL heme-binding protein GyrI-like PF06445.10 gi|89255488|ref|YP_512849.1| - 0.081 12.9 0.0 0.081 12.9 0.0 1.1 1 0 0 1 1 1 0 GyrI-like small molecule binding domain DDE_Tnp_1_2 PF13586.1 gi|89255489|ref|YP_512850.1| - 4.4e-16 58.8 0.1 1.3e-15 57.3 0.1 1.8 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|89255489|ref|YP_512850.1| - 2.5e-13 50.0 1.1 8.5e-13 48.3 0.7 1.7 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|89255489|ref|YP_512850.1| - 2.1e-09 37.2 0.1 2.9e-09 36.8 0.1 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF4096 PF13340.1 gi|89255489|ref|YP_512850.1| - 0.00059 19.6 0.0 0.0012 18.7 0.0 1.5 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) CM_2 PF01817.16 gi|89255490|ref|YP_512851.1| - 5.7e-08 32.7 1.0 1.8e-07 31.1 0.1 2.2 2 0 0 2 2 2 1 Chorismate mutase type II Trp_halogenase PF04820.9 gi|89255490|ref|YP_512851.1| - 0.022 13.4 0.6 0.026 13.1 0.4 1.1 1 0 0 1 1 1 0 Tryptophan halogenase OmpH PF03938.9 gi|89255490|ref|YP_512851.1| - 0.081 12.8 3.6 0.11 12.4 2.5 1.3 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) PMSR PF01625.16 gi|89255490|ref|YP_512851.1| - 0.15 11.9 1.3 0.23 11.3 0.4 1.7 1 1 1 2 2 2 0 Peptide methionine sulfoxide reductase DUF2126 PF09899.4 gi|89255491|ref|YP_512852.1| - 0 1219.3 0.0 0 1219.0 0.0 1.0 1 0 0 1 1 1 1 Putative amidoligase enzyme (DUF2126) Transglut_core PF01841.14 gi|89255491|ref|YP_512852.1| - 1.9e-21 76.3 0.0 3.9e-21 75.3 0.0 1.5 1 0 0 1 1 1 1 Transglutaminase-like superfamily Bact_transglu_N PF08379.5 gi|89255491|ref|YP_512852.1| - 0.00075 19.7 0.0 0.0018 18.5 0.0 1.7 1 0 0 1 1 1 1 Bacterial transglutaminase-like N-terminal region DUF553 PF04473.7 gi|89255491|ref|YP_512852.1| - 0.0053 16.0 0.0 0.0097 15.1 0.0 1.3 1 0 0 1 1 1 1 Transglutaminase-like domain OMPdecase PF00215.19 gi|89255492|ref|YP_512853.1| - 3.2e-24 85.5 0.0 3.7e-24 85.3 0.0 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family CbiX PF01903.12 gi|89255492|ref|YP_512853.1| - 0.013 15.5 0.0 0.06 13.4 0.0 2.2 1 1 0 1 1 1 0 CbiX PEP_mutase PF13714.1 gi|89255492|ref|YP_512853.1| - 0.035 13.3 0.0 1.5 7.9 0.0 2.3 1 1 1 2 2 2 0 Phosphoenolpyruvate phosphomutase DHO_dh PF01180.16 gi|89255493|ref|YP_512854.1| - 4.2e-14 52.2 0.8 4e-12 45.6 0.5 2.5 1 1 0 1 1 1 1 Dihydroorotate dehydrogenase His_biosynth PF00977.16 gi|89255493|ref|YP_512854.1| - 7.9e-05 22.0 0.0 0.00014 21.2 0.0 1.3 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.12 gi|89255493|ref|YP_512854.1| - 0.0046 15.8 0.0 1.5 7.5 0.0 2.2 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) PcrB PF01884.12 gi|89255493|ref|YP_512854.1| - 0.0054 16.0 0.0 0.0077 15.5 0.0 1.2 1 0 0 1 1 1 1 PcrB family CRA_rpt PF07046.6 gi|89255494|ref|YP_512855.1| - 0.042 13.8 0.0 0.059 13.3 0.0 1.2 1 0 0 1 1 1 0 Cytoplasmic repetitive antigen (CRA) like repeat PDH PF02153.12 gi|89255495|ref|YP_512856.1| - 2.3e-28 98.8 0.0 2.8e-28 98.5 0.0 1.0 1 0 0 1 1 1 1 Prephenate dehydrogenase F420_oxidored PF03807.12 gi|89255495|ref|YP_512856.1| - 0.024 15.0 1.0 0.36 11.2 0.0 2.4 1 1 1 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent LrgB PF04172.11 gi|89255495|ref|YP_512856.1| - 0.15 11.1 0.0 0.25 10.4 0.0 1.3 1 0 0 1 1 1 0 LrgB-like family Tyr_Deacylase PF02580.11 gi|89255496|ref|YP_512857.1| - 4.1e-49 166.2 0.0 4.5e-49 166.1 0.0 1.0 1 0 0 1 1 1 1 D-Tyr-tRNA(Tyr) deacylase MFS_1 PF07690.11 gi|89255497|ref|YP_512858.1| - 1.1e-13 50.6 38.8 3.6e-09 35.8 10.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF4519 PF15012.1 gi|89255497|ref|YP_512858.1| - 0.68 9.8 9.4 3.6 7.5 0.4 3.4 3 0 0 3 3 3 0 Domain of unknown function (DUF4519) DUF515 PF04415.7 gi|89255497|ref|YP_512858.1| - 2.1 6.4 6.1 2.8 6.0 0.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF515) 7TMR-DISM_7TM PF07695.6 gi|89255497|ref|YP_512858.1| - 2.8 7.5 29.3 0.26 10.9 2.3 2.7 1 1 1 2 2 2 0 7TM diverse intracellular signalling MFS_1 PF07690.11 gi|89255498|ref|YP_512859.1| - 0.0011 17.7 13.2 0.0016 17.2 9.1 1.2 1 0 0 1 1 1 1 Major Facilitator Superfamily DUF1228 PF06779.9 gi|89255498|ref|YP_512859.1| - 0.0026 17.7 1.1 0.004 17.1 0.8 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1228) Sugar_tr PF00083.19 gi|89255498|ref|YP_512859.1| - 0.31 9.5 12.1 0.07 11.6 3.7 2.0 1 1 1 2 2 2 0 Sugar (and other) transporter Glyco_hydro_32C PF08244.7 gi|89255499|ref|YP_512860.1| - 0.0089 16.3 0.9 0.02 15.2 0.5 1.8 1 1 0 1 1 1 1 Glycosyl hydrolases family 32 C terminal Glyco_hydro_32N PF00251.15 gi|89255500|ref|YP_512861.1| - 1.1e-67 228.6 8.3 1.4e-67 228.2 5.7 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 32 N-terminal domain DDE_3 PF13358.1 gi|89255501|ref|YP_512862.1| - 1.7e-31 108.9 0.0 2.8e-31 108.2 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.11 gi|89255501|ref|YP_512862.1| - 1.5e-07 31.0 0.2 1.1e-06 28.3 0.1 2.1 2 0 0 2 2 2 1 Transposase DDE_1 PF03184.14 gi|89255501|ref|YP_512862.1| - 5.8e-07 28.8 0.1 9.5e-07 28.1 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_28 PF13518.1 gi|89255501|ref|YP_512862.1| - 0.00058 19.8 0.0 0.0018 18.2 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain rve PF00665.21 gi|89255501|ref|YP_512862.1| - 0.00072 19.6 0.0 0.0013 18.7 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.1 gi|89255501|ref|YP_512862.1| - 0.0087 15.6 0.0 0.029 14.0 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.1 gi|89255501|ref|YP_512862.1| - 0.02 15.0 0.0 0.032 14.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix DDE_Tnp_ISAZ013 PF07592.6 gi|89255501|ref|YP_512862.1| - 0.039 12.6 0.6 0.32 9.7 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain Nitroreductase PF00881.19 gi|89255503|ref|YP_512864.1| - 2e-32 112.3 0.0 2.9e-32 111.7 0.0 1.3 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.1 gi|89255503|ref|YP_512864.1| - 0.0037 16.4 0.1 1.8 7.6 0.0 2.7 1 1 0 2 2 2 2 Putative TM nitroreductase DUF1275 PF06912.6 gi|89255504|ref|YP_512865.1| - 5.6e-35 120.4 18.6 6.7e-35 120.1 12.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1275) Fst_toxin PF13955.1 gi|89255504|ref|YP_512865.1| - 5.8 6.7 12.8 0.12 12.1 3.8 2.0 2 0 0 2 2 2 0 Toxin Fst, type I toxin-antitoxin system Trp_Tyr_perm PF03222.8 gi|89255505|ref|YP_512866.1| - 1.2e-93 314.0 43.0 1.6e-93 313.6 29.8 1.0 1 0 0 1 1 1 1 Tryptophan/tyrosine permease family Aa_trans PF01490.13 gi|89255505|ref|YP_512866.1| - 2.5e-06 26.2 46.2 2.5e-05 22.9 31.9 2.5 1 1 0 1 1 1 1 Transmembrane amino acid transporter protein GidB PF02527.10 gi|89255506|ref|YP_512867.1| - 8.6e-50 168.4 0.4 1.1e-49 168.0 0.2 1.2 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G Methyltransf_31 PF13847.1 gi|89255506|ref|YP_512867.1| - 4.2e-08 32.9 0.0 7.8e-08 32.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|89255506|ref|YP_512867.1| - 0.00013 21.3 0.0 0.00017 20.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_16 PF10294.4 gi|89255506|ref|YP_512867.1| - 0.005 16.3 0.0 0.0074 15.7 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_18 PF12847.2 gi|89255506|ref|YP_512867.1| - 0.0093 16.5 0.0 0.014 15.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain DUF2672 PF10878.3 gi|89255506|ref|YP_512867.1| - 0.015 15.0 0.6 0.16 11.6 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2672) CAT PF00302.13 gi|89255506|ref|YP_512867.1| - 0.051 13.1 0.2 0.096 12.2 0.0 1.5 2 0 0 2 2 2 0 Chloramphenicol acetyltransferase Methyltransf_12 PF08242.7 gi|89255506|ref|YP_512867.1| - 0.072 13.5 0.0 0.14 12.5 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain Ala_racemase_N PF01168.15 gi|89255507|ref|YP_512868.1| - 1.1e-35 123.2 0.0 1.2e-35 123.0 0.0 1.0 1 0 0 1 1 1 1 Alanine racemase, N-terminal domain Prenylcys_lyase PF07156.9 gi|89255507|ref|YP_512868.1| - 0.024 13.5 0.1 0.034 13.0 0.0 1.2 1 0 0 1 1 1 0 Prenylcysteine lyase DNA_pol3_a_NI PF14480.1 gi|89255507|ref|YP_512868.1| - 0.029 14.0 1.9 0.044 13.4 0.2 2.3 2 0 0 2 2 2 0 DNA polymerase III polC-type N-terminus I Innexin PF00876.13 gi|89255507|ref|YP_512868.1| - 0.091 11.8 0.1 0.12 11.5 0.0 1.1 1 0 0 1 1 1 0 Innexin FUSC_2 PF13515.1 gi|89255508|ref|YP_512869.1| - 5.9e-12 45.6 14.0 5.9e-12 45.6 9.7 3.1 1 1 1 2 2 2 1 Fusaric acid resistance protein-like LysR_substrate PF03466.15 gi|89255509|ref|YP_512870.1| - 2.9e-20 72.2 0.0 3.6e-20 71.9 0.0 1.0 1 0 0 1 1 1 1 LysR substrate binding domain Lipoprotein_17 PF04200.7 gi|89255509|ref|YP_512870.1| - 7.7 6.7 9.0 31 4.7 6.2 2.1 1 1 0 1 1 1 0 Lipoprotein associated domain MFS_1 PF07690.11 gi|89255510|ref|YP_512871.1| - 8.1e-32 110.2 44.6 8.1e-32 110.2 30.9 1.3 1 1 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|89255510|ref|YP_512871.1| - 9.8e-09 34.2 52.2 1e-07 30.9 11.4 3.1 2 1 1 3 3 3 2 Sugar (and other) transporter DUF1228 PF06779.9 gi|89255510|ref|YP_512871.1| - 1.3e-05 25.1 16.5 0.00038 20.4 0.8 3.4 3 1 1 4 4 4 2 Protein of unknown function (DUF1228) MFS_2 PF13347.1 gi|89255510|ref|YP_512871.1| - 0.00043 18.7 56.3 0.0036 15.7 9.4 3.0 1 1 2 3 3 3 2 MFS/sugar transport protein SIS_2 PF13580.1 gi|89255511|ref|YP_512872.1| - 1.3e-31 109.1 0.3 1.6e-31 108.8 0.2 1.1 1 0 0 1 1 1 1 SIS domain SIS PF01380.17 gi|89255511|ref|YP_512872.1| - 3.3e-06 26.7 0.2 3.5e-05 23.4 0.2 2.1 1 1 0 1 1 1 1 SIS domain FAD_binding_4 PF01565.18 gi|89255511|ref|YP_512872.1| - 0.0047 16.3 0.1 1.7 8.0 0.0 2.2 2 0 0 2 2 2 2 FAD binding domain ADH_zinc_N PF00107.21 gi|89255511|ref|YP_512872.1| - 0.094 12.2 0.2 4 7.0 0.0 2.2 2 0 0 2 2 2 0 Zinc-binding dehydrogenase SmpA_OmlA PF04355.8 gi|89255512|ref|YP_512873.1| - 7.9e-17 60.6 0.1 9.4e-17 60.4 0.1 1.1 1 0 0 1 1 1 1 SmpA / OmlA family Lgl_C PF08596.5 gi|89255512|ref|YP_512873.1| - 0.0042 15.6 0.0 0.0048 15.4 0.0 1.0 1 0 0 1 1 1 1 Lethal giant larvae(Lgl) like, C-terminal DUF2283 PF10049.4 gi|89255512|ref|YP_512873.1| - 0.09 12.6 0.0 0.15 11.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2283) DUF3192 PF11399.3 gi|89255512|ref|YP_512873.1| - 0.13 12.2 0.0 0.19 11.6 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3192) Ribosomal_S20p PF01649.13 gi|89255513|ref|YP_512874.1| - 4.8e-29 100.5 12.8 5.3e-29 100.4 8.9 1.0 1 0 0 1 1 1 1 Ribosomal protein S20 DUF2680 PF10925.3 gi|89255513|ref|YP_512874.1| - 0.015 15.1 0.6 0.054 13.3 0.0 2.0 2 1 0 2 2 2 0 Protein of unknown function (DUF2680) LepA_C PF06421.7 gi|89255514|ref|YP_512875.1| - 7.9e-52 173.7 3.5 1.7e-51 172.6 2.5 1.6 1 0 0 1 1 1 1 GTP-binding protein LepA C-terminus GTP_EFTU PF00009.22 gi|89255514|ref|YP_512875.1| - 8.9e-51 171.9 0.2 1.4e-50 171.3 0.2 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_C PF00679.19 gi|89255514|ref|YP_512875.1| - 5.1e-20 71.1 0.0 1.6e-19 69.5 0.0 1.9 1 0 0 1 1 1 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.20 gi|89255514|ref|YP_512875.1| - 4.3e-08 33.1 1.3 1.2e-07 31.6 0.9 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|89255514|ref|YP_512875.1| - 4e-05 23.5 0.0 8.1e-05 22.5 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase Ras PF00071.17 gi|89255514|ref|YP_512875.1| - 0.0001 21.7 0.0 0.00022 20.6 0.0 1.5 1 0 0 1 1 1 1 Ras family EFG_II PF14492.1 gi|89255514|ref|YP_512875.1| - 0.0006 19.6 0.1 0.0032 17.2 0.1 2.2 1 1 0 1 1 1 1 Elongation Factor G, domain II SRPRB PF09439.5 gi|89255514|ref|YP_512875.1| - 0.0048 16.1 0.0 0.01 15.0 0.0 1.6 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit Miro PF08477.8 gi|89255514|ref|YP_512875.1| - 0.017 15.6 0.0 0.036 14.5 0.0 1.6 1 0 0 1 1 1 0 Miro-like protein tRNA_Me_trans PF03054.11 gi|89255515|ref|YP_512876.1| - 2.8e-142 473.5 0.1 3.2e-142 473.3 0.1 1.0 1 0 0 1 1 1 1 tRNA methyl transferase NAD_synthase PF02540.12 gi|89255515|ref|YP_512876.1| - 8e-09 34.7 0.0 1.8e-07 30.3 0.0 2.2 2 0 0 2 2 2 1 NAD synthase Asn_synthase PF00733.16 gi|89255515|ref|YP_512876.1| - 5e-07 29.4 0.0 8.3e-07 28.7 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase ThiI PF02568.9 gi|89255515|ref|YP_512876.1| - 2e-05 24.1 0.0 3.7e-05 23.2 0.0 1.4 2 0 0 2 2 2 1 Thiamine biosynthesis protein (ThiI) QueC PF06508.8 gi|89255515|ref|YP_512876.1| - 0.002 17.4 0.0 0.011 15.0 0.0 2.0 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC PAPS_reduct PF01507.14 gi|89255515|ref|YP_512876.1| - 0.06 13.1 0.0 0.45 10.3 0.0 2.1 1 1 1 2 2 2 0 Phosphoadenosine phosphosulfate reductase family ATP_bind_3 PF01171.15 gi|89255515|ref|YP_512876.1| - 0.088 12.3 0.1 0.24 10.8 0.0 2.0 1 1 0 1 1 1 0 PP-loop family Med19 PF10278.4 gi|89255515|ref|YP_512876.1| - 0.11 12.1 0.1 0.19 11.3 0.1 1.3 1 0 0 1 1 1 0 Mediator of RNA pol II transcription subunit 19 Pep_deformylase PF01327.16 gi|89255517|ref|YP_512878.1| - 1.3e-51 174.1 0.2 1.5e-51 173.8 0.1 1.1 1 0 0 1 1 1 1 Polypeptide deformylase DUF1713 PF08213.6 gi|89255517|ref|YP_512878.1| - 1.4 8.6 5.7 2.3 7.8 3.9 1.3 1 0 0 1 1 1 0 Mitochondrial domain of unknown function (DUF1713) DMRL_synthase PF00885.14 gi|89255518|ref|YP_512879.1| - 1.1e-50 171.0 0.3 1.2e-50 170.9 0.2 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase DHBP_synthase PF00926.14 gi|89255519|ref|YP_512880.1| - 4.1e-79 264.3 0.4 5.6e-79 263.8 0.3 1.2 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase GTP_cyclohydro2 PF00925.15 gi|89255519|ref|YP_512880.1| - 2.8e-54 182.8 0.0 6.6e-54 181.6 0.0 1.6 1 0 0 1 1 1 1 GTP cyclohydrolase II Lum_binding PF00677.12 gi|89255520|ref|YP_512881.1| - 1.2e-37 127.6 7.4 2.8e-19 68.7 0.8 2.1 2 0 0 2 2 2 2 Lumazine binding domain RibD_C PF01872.12 gi|89255521|ref|YP_512882.1| - 1.1e-31 110.0 0.0 2.2e-31 109.0 0.0 1.5 1 0 0 1 1 1 1 RibD C-terminal domain dCMP_cyt_deam_1 PF00383.17 gi|89255521|ref|YP_512882.1| - 3.1e-22 78.1 1.2 5.4e-22 77.3 0.8 1.4 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region MafB19-deam PF14437.1 gi|89255521|ref|YP_512882.1| - 2.2e-05 24.1 0.2 6e-05 22.7 0.1 1.7 1 0 0 1 1 1 1 MafB19-like deaminase APOBEC_N PF08210.6 gi|89255521|ref|YP_512882.1| - 0.013 15.1 0.3 0.096 12.3 0.2 2.1 1 1 0 1 1 1 0 APOBEC-like N-terminal domain zf-C2HC_2 PF13913.1 gi|89255521|ref|YP_512882.1| - 0.081 12.6 3.4 0.17 11.5 2.4 1.6 1 0 0 1 1 1 0 zinc-finger of a C2HC-type DDE_Tnp_1_2 PF13586.1 gi|89255522|ref|YP_512883.1| - 4.4e-16 58.8 0.1 1.3e-15 57.3 0.1 1.8 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|89255522|ref|YP_512883.1| - 2.5e-13 50.0 1.1 8.5e-13 48.3 0.7 1.7 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|89255522|ref|YP_512883.1| - 2.1e-09 37.2 0.1 2.9e-09 36.8 0.1 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF4096 PF13340.1 gi|89255522|ref|YP_512883.1| - 0.00059 19.6 0.0 0.0012 18.7 0.0 1.5 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) DDE_3 PF13358.1 gi|89255523|ref|YP_512884.1| - 1.1e-30 106.2 0.0 2e-30 105.4 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.11 gi|89255523|ref|YP_512884.1| - 5.7e-07 29.2 0.2 3.8e-06 26.5 0.1 2.1 2 0 0 2 2 2 1 Transposase DDE_1 PF03184.14 gi|89255523|ref|YP_512884.1| - 6.9e-07 28.6 0.1 1.1e-06 27.9 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease rve PF00665.21 gi|89255523|ref|YP_512884.1| - 0.00068 19.7 0.0 0.0012 18.9 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_28 PF13518.1 gi|89255523|ref|YP_512884.1| - 0.028 14.3 0.1 0.12 12.4 0.0 2.1 1 1 0 1 1 1 0 Helix-turn-helix domain DDE_Tnp_ISAZ013 PF07592.6 gi|89255523|ref|YP_512884.1| - 0.047 12.4 0.6 0.42 9.2 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain HTH_29 PF13551.1 gi|89255523|ref|YP_512884.1| - 0.082 13.0 0.0 0.13 12.4 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix Cytochrom_B_N PF00033.14 gi|89255524|ref|YP_512885.1| - 5.4e-29 100.8 16.1 6.3e-29 100.6 11.1 1.1 1 0 0 1 1 1 1 Cytochrome b(N-terminal)/b6/petB Ni_hydr_CYTB PF01292.15 gi|89255524|ref|YP_512885.1| - 6.7e-24 84.2 12.7 8.6e-24 83.9 8.8 1.1 1 0 0 1 1 1 1 Prokaryotic cytochrome b561 COX15-CtaA PF02628.10 gi|89255524|ref|YP_512885.1| - 0.0013 17.6 6.5 0.0017 17.2 4.5 1.1 1 0 0 1 1 1 1 Cytochrome oxidase assembly protein Na_Ca_ex PF01699.19 gi|89255524|ref|YP_512885.1| - 4.9 6.7 13.6 0.2 11.2 2.2 2.1 2 0 0 2 2 2 0 Sodium/calcium exchanger protein Ferric_reduct PF01794.14 gi|89255524|ref|YP_512885.1| - 8.4 6.5 15.8 5.4 7.1 2.8 2.7 1 1 1 2 2 2 0 Ferric reductase like transmembrane component Na_H_antiport_1 PF06965.7 gi|89255525|ref|YP_512886.1| - 2.7e-124 414.8 29.6 3.3e-124 414.5 20.5 1.0 1 0 0 1 1 1 1 Na+/H+ antiporter 1 Exo_endo_phos PF03372.18 gi|89255526|ref|YP_512887.1| - 1.1e-15 58.2 0.1 1.4e-15 57.9 0.1 1.1 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Exo_endo_phos_2 PF14529.1 gi|89255526|ref|YP_512887.1| - 6e-05 22.6 0.0 0.0002 20.9 0.0 2.0 1 1 0 1 1 1 1 Endonuclease-reverse transcriptase Acyltransferase PF01553.16 gi|89255527|ref|YP_512888.1| - 2.1e-20 72.4 0.0 2.9e-20 72.0 0.0 1.2 1 0 0 1 1 1 1 Acyltransferase ZYG-11_interact PF05884.7 gi|89255527|ref|YP_512888.1| - 0.48 9.4 1.8 0.69 8.9 1.2 1.3 1 0 0 1 1 1 0 Interactor of ZYG-11 DUF2721 PF11026.3 gi|89255527|ref|YP_512888.1| - 2.7 7.6 5.9 4.6 6.9 4.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2721) Acyltransferase PF01553.16 gi|89255528|ref|YP_512889.1| - 4.2e-24 84.4 0.0 5.7e-24 84.0 0.0 1.2 1 0 0 1 1 1 1 Acyltransferase DUF2721 PF11026.3 gi|89255528|ref|YP_512889.1| - 4.5 6.9 6.3 7.2 6.2 4.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2721) DUF3470 PF11953.3 gi|89255529|ref|YP_512890.1| - 6.2e-18 64.1 0.2 8.3e-18 63.7 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF3470) Fer4 PF00037.22 gi|89255529|ref|YP_512890.1| - 1.3e-09 37.2 25.2 1.3e-07 30.8 4.0 3.6 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_9 PF13187.1 gi|89255529|ref|YP_512890.1| - 1.6e-09 37.8 25.6 3.2e-06 27.2 9.9 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|89255529|ref|YP_512890.1| - 1.7e-08 34.1 33.1 4.1e-06 26.4 11.4 2.6 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|89255529|ref|YP_512890.1| - 3.2e-08 33.8 29.7 8.2e-07 29.3 10.0 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|89255529|ref|YP_512890.1| - 1.1e-07 31.3 24.7 0.00046 19.9 3.6 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|89255529|ref|YP_512890.1| - 1.5e-07 30.8 19.5 0.00066 19.4 2.6 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_11 PF13247.1 gi|89255529|ref|YP_512890.1| - 4.1e-05 23.3 9.0 7.3e-05 22.5 6.3 1.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|89255529|ref|YP_512890.1| - 4.4e-05 24.1 13.8 0.0018 18.9 2.6 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|89255529|ref|YP_512890.1| - 5.4e-05 23.1 11.8 0.0015 18.5 1.2 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|89255529|ref|YP_512890.1| - 0.00066 19.4 21.7 0.033 14.0 5.4 2.7 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|89255529|ref|YP_512890.1| - 0.005 17.1 17.1 0.048 14.0 3.5 2.5 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|89255529|ref|YP_512890.1| - 0.019 15.2 22.1 0.11 12.8 1.8 3.0 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_3 PF12798.2 gi|89255529|ref|YP_512890.1| - 0.068 13.7 8.0 0.068 13.7 5.6 2.8 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_18 PF13746.1 gi|89255529|ref|YP_512890.1| - 3.2 8.2 17.3 1.7 9.1 1.9 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_20 PF14691.1 gi|89255529|ref|YP_512890.1| - 4.7 6.8 14.2 2.3 7.8 2.4 2.3 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_15 PF13459.1 gi|89255529|ref|YP_512890.1| - 6.4 7.4 17.0 0.85 10.2 2.7 2.9 3 1 0 3 3 3 0 4Fe-4S single cluster domain Frag1 PF10277.4 gi|89255530|ref|YP_512891.1| - 3.1e-08 33.3 23.2 3.8e-08 33.0 16.1 1.1 1 0 0 1 1 1 1 Frag1/DRAM/Sfk1 family DUF998 PF06197.8 gi|89255530|ref|YP_512891.1| - 0.0005 19.4 10.1 0.00071 18.9 7.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF998) DUF3792 PF12670.2 gi|89255530|ref|YP_512891.1| - 4.1 7.2 17.7 0.36 10.6 3.2 3.4 2 1 2 4 4 4 0 Protein of unknown function (DUF3792) Methyltransf_3 PF01596.12 gi|89255531|ref|YP_512892.1| - 4e-49 166.4 0.2 4.3e-49 166.3 0.1 1.0 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_24 PF13578.1 gi|89255531|ref|YP_512892.1| - 1.3e-13 51.7 0.0 1.5e-13 51.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|89255531|ref|YP_512892.1| - 0.00034 21.1 0.0 0.00041 20.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|89255531|ref|YP_512892.1| - 0.0036 16.8 0.1 0.0092 15.5 0.0 1.6 1 1 1 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.1 gi|89255531|ref|YP_512892.1| - 0.013 15.1 0.0 0.016 14.7 0.0 1.1 1 0 0 1 1 1 0 Methyltransferase domain ATP-grasp PF02222.17 gi|89255532|ref|YP_512893.1| - 2.9e-58 196.0 0.0 4.9e-58 195.2 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|89255532|ref|YP_512893.1| - 3.7e-15 56.1 0.0 6.1e-15 55.4 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|89255532|ref|YP_512893.1| - 2.6e-09 36.7 0.0 1.9e-08 33.9 0.0 2.0 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus RimK PF08443.6 gi|89255532|ref|YP_512893.1| - 2.7e-08 33.5 0.0 9.6e-08 31.7 0.0 1.9 2 0 0 2 2 2 1 RimK-like ATP-grasp domain CPSase_L_D2 PF02786.12 gi|89255532|ref|YP_512893.1| - 9.9e-08 31.5 0.0 1.9e-07 30.5 0.0 1.5 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_3 PF02655.9 gi|89255532|ref|YP_512893.1| - 2.7e-06 27.3 0.0 5.2e-06 26.4 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.14 gi|89255532|ref|YP_512893.1| - 4.2e-05 23.2 0.0 8.7e-05 22.1 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATPgrasp_Ter PF15632.1 gi|89255532|ref|YP_512893.1| - 0.00071 18.4 0.0 0.058 12.1 0.0 2.3 2 1 0 2 2 2 1 ATP-grasp in the biosynthetic pathway with Ter operon CPSase_L_chain PF00289.17 gi|89255532|ref|YP_512893.1| - 0.0033 17.5 0.1 0.0075 16.3 0.0 1.6 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, N-terminal domain 2-Hacid_dh_C PF02826.14 gi|89255532|ref|YP_512893.1| - 0.0091 15.1 0.0 0.015 14.4 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CBM_5_12 PF02839.9 gi|89255533|ref|YP_512894.1| - 2.3 7.8 21.0 0.21 11.2 1.1 4.5 5 0 0 5 5 5 0 Carbohydrate binding domain AAA_2 PF07724.9 gi|89255534|ref|YP_512895.1| - 5.4e-59 198.9 0.1 6.2e-56 188.9 0.0 2.8 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) ClpB_D2-small PF10431.4 gi|89255534|ref|YP_512895.1| - 1.9e-26 91.7 0.4 1e-25 89.4 0.3 2.4 1 0 0 1 1 1 1 C-terminal, D2-small domain, of ClpB protein AAA PF00004.24 gi|89255534|ref|YP_512895.1| - 3.4e-23 82.2 0.0 7.8e-13 48.7 0.0 2.9 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Clp_N PF02861.15 gi|89255534|ref|YP_512895.1| - 6.7e-21 73.9 0.0 4.8e-09 36.0 0.0 3.3 3 0 0 3 3 2 2 Clp amino terminal domain AAA_5 PF07728.9 gi|89255534|ref|YP_512895.1| - 5.3e-19 68.3 0.3 4.5e-13 49.1 0.0 3.4 3 0 0 3 3 3 2 AAA domain (dynein-related subfamily) AAA_16 PF13191.1 gi|89255534|ref|YP_512895.1| - 1.5e-16 60.8 0.1 9.2e-05 22.5 0.0 4.6 2 2 1 4 4 4 3 AAA ATPase domain AAA_22 PF13401.1 gi|89255534|ref|YP_512895.1| - 1.3e-09 38.2 1.7 0.00096 19.3 0.0 4.0 2 2 0 3 3 3 2 AAA domain Sigma54_activat PF00158.21 gi|89255534|ref|YP_512895.1| - 9.3e-08 31.7 0.1 9.7e-05 21.9 0.0 2.9 2 1 0 2 2 2 1 Sigma-54 interaction domain IstB_IS21 PF01695.12 gi|89255534|ref|YP_512895.1| - 1.8e-07 30.7 0.0 0.016 14.5 0.0 3.0 3 0 0 3 3 3 2 IstB-like ATP binding protein AAA_17 PF13207.1 gi|89255534|ref|YP_512895.1| - 2.1e-07 31.7 3.8 0.015 16.0 0.0 4.0 2 2 0 2 2 2 2 AAA domain AAA_18 PF13238.1 gi|89255534|ref|YP_512895.1| - 2.1e-05 24.8 4.4 0.14 12.4 0.0 3.6 3 1 0 3 3 2 2 AAA domain Arch_ATPase PF01637.13 gi|89255534|ref|YP_512895.1| - 8.7e-05 22.3 9.8 0.22 11.2 0.0 5.3 4 2 2 6 6 6 2 Archaeal ATPase RNA_helicase PF00910.17 gi|89255534|ref|YP_512895.1| - 0.00021 21.3 0.0 1.6 8.9 0.0 3.3 3 0 0 3 3 2 2 RNA helicase AAA_28 PF13521.1 gi|89255534|ref|YP_512895.1| - 0.00029 20.8 0.0 2.3 8.1 0.0 3.5 3 0 0 3 3 3 2 AAA domain Mg_chelatase PF01078.16 gi|89255534|ref|YP_512895.1| - 0.00033 19.8 0.0 1.4 7.9 0.0 3.4 2 1 0 3 3 3 1 Magnesium chelatase, subunit ChlI AAA_19 PF13245.1 gi|89255534|ref|YP_512895.1| - 0.00065 19.3 0.0 0.089 12.5 0.0 2.7 2 0 0 2 2 2 1 Part of AAA domain ABC_tran PF00005.22 gi|89255534|ref|YP_512895.1| - 0.0007 19.9 0.8 1.2 9.4 0.0 3.9 3 1 0 3 3 3 1 ABC transporter AAA_25 PF13481.1 gi|89255534|ref|YP_512895.1| - 0.0011 18.3 0.0 1.2 8.5 0.0 3.1 2 1 1 3 3 3 1 AAA domain NACHT PF05729.7 gi|89255534|ref|YP_512895.1| - 0.0013 18.4 0.0 0.23 11.0 0.0 2.9 2 1 0 2 2 2 1 NACHT domain DUF815 PF05673.8 gi|89255534|ref|YP_512895.1| - 0.0013 17.6 0.1 0.16 10.8 0.0 3.1 2 1 0 2 2 2 1 Protein of unknown function (DUF815) DUF258 PF03193.11 gi|89255534|ref|YP_512895.1| - 0.0015 17.7 0.0 1.3 8.1 0.0 2.6 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|89255534|ref|YP_512895.1| - 0.0021 18.4 14.5 1 9.6 7.4 3.8 3 1 0 3 3 3 1 AAA domain AAA_3 PF07726.6 gi|89255534|ref|YP_512895.1| - 0.0024 17.4 0.1 2.6 7.6 0.0 3.4 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.7 gi|89255534|ref|YP_512895.1| - 0.0026 16.8 0.0 0.16 11.0 0.0 2.6 2 0 0 2 2 2 1 Zeta toxin MobB PF03205.9 gi|89255534|ref|YP_512895.1| - 0.003 17.2 0.0 1.5 8.4 0.0 2.9 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_24 PF13479.1 gi|89255534|ref|YP_512895.1| - 0.0041 16.7 0.0 0.83 9.1 0.0 3.0 3 0 0 3 3 2 1 AAA domain NTPase_1 PF03266.10 gi|89255534|ref|YP_512895.1| - 0.0048 16.6 0.5 1.6 8.4 0.0 3.6 4 0 0 4 4 3 1 NTPase Miro PF08477.8 gi|89255534|ref|YP_512895.1| - 0.006 17.0 0.3 0.15 12.5 0.0 2.9 3 0 0 3 3 2 1 Miro-like protein UPF0079 PF02367.12 gi|89255534|ref|YP_512895.1| - 0.02 14.5 0.0 8.2 6.0 0.0 2.6 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 ATP_bind_1 PF03029.12 gi|89255534|ref|YP_512895.1| - 0.026 14.0 0.0 3.8 6.9 0.0 3.4 3 0 0 3 3 3 0 Conserved hypothetical ATP binding protein AAA_29 PF13555.1 gi|89255534|ref|YP_512895.1| - 0.027 13.9 0.0 5.5 6.6 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain PduV-EutP PF10662.4 gi|89255534|ref|YP_512895.1| - 0.035 13.5 0.0 1.2 8.6 0.0 2.9 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_10 PF12846.2 gi|89255534|ref|YP_512895.1| - 0.044 13.2 3.2 0.79 9.0 0.0 3.7 3 1 1 4 4 4 0 AAA-like domain MMR_HSR1 PF01926.18 gi|89255534|ref|YP_512895.1| - 0.049 13.5 0.0 12 5.8 0.0 3.2 2 1 0 2 2 2 0 50S ribosome-binding GTPase AAA_33 PF13671.1 gi|89255534|ref|YP_512895.1| - 0.05 13.4 0.0 13 5.6 0.0 2.8 2 0 0 2 2 2 0 AAA domain LGFP PF08310.6 gi|89255534|ref|YP_512895.1| - 0.053 13.1 0.0 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 LGFP repeat Torsin PF06309.6 gi|89255534|ref|YP_512895.1| - 0.12 12.2 0.0 0.51 10.2 0.0 2.0 2 0 0 2 2 1 0 Torsin RNase_P_pop3 PF08228.6 gi|89255535|ref|YP_512896.1| - 0.11 12.2 0.2 0.28 11.0 0.2 1.7 1 1 0 1 1 1 0 RNase P subunit Pop3 DUF104 PF01954.11 gi|89255535|ref|YP_512896.1| - 4 7.5 5.4 6 6.9 0.5 2.3 2 0 0 2 2 2 0 Protein of unknown function DUF104 Trp_syntA PF00290.15 gi|89255536|ref|YP_512897.1| - 6.5e-95 316.5 0.2 7.3e-95 316.3 0.1 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain His_biosynth PF00977.16 gi|89255536|ref|YP_512897.1| - 4.8e-05 22.7 0.2 0.048 12.9 0.0 2.2 1 1 1 2 2 2 2 Histidine biosynthesis protein PcrB PF01884.12 gi|89255536|ref|YP_512897.1| - 0.0079 15.4 0.2 0.72 9.0 0.0 2.6 3 0 0 3 3 3 1 PcrB family GatB_Yqey PF02637.13 gi|89255536|ref|YP_512897.1| - 0.048 13.3 0.0 0.099 12.3 0.0 1.5 1 0 0 1 1 1 0 GatB domain DUF362 PF04015.7 gi|89255536|ref|YP_512897.1| - 0.091 12.2 0.0 0.17 11.3 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF362) PALP PF00291.20 gi|89255537|ref|YP_512898.1| - 1e-46 159.5 0.3 1.2e-46 159.3 0.2 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Peptidase_M32 PF02074.10 gi|89255538|ref|YP_512899.1| - 1.5e-155 518.6 9.3 1.8e-155 518.3 6.4 1.0 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase E2R135 PF11570.3 gi|89255538|ref|YP_512899.1| - 0.033 14.2 0.1 0.073 13.1 0.1 1.6 1 0 0 1 1 1 0 Coiled-coil receptor-binding R-domain of colicin E2 Voltage_CLC PF00654.15 gi|89255539|ref|YP_512900.1| - 1.9e-80 270.5 35.3 2.2e-80 270.3 24.4 1.0 1 0 0 1 1 1 1 Voltage gated chloride channel DUF3487 PF11990.3 gi|89255539|ref|YP_512900.1| - 0.057 12.8 0.4 0.057 12.8 0.2 3.8 2 2 2 4 4 4 0 Protein of unknown function (DUF3487) FtsX PF02687.16 gi|89255540|ref|YP_512901.1| - 0.072 12.8 9.0 0.1 12.3 6.2 1.2 1 0 0 1 1 1 0 FtsX-like permease family K1 PF02960.9 gi|89255540|ref|YP_512901.1| - 0.16 11.9 0.2 0.16 11.9 0.2 1.5 2 0 0 2 2 2 0 K1 glycoprotein Herpes_LMP1 PF05297.6 gi|89255540|ref|YP_512901.1| - 1.7 7.4 4.9 2.1 7.1 3.4 1.1 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) DUF4064 PF13273.1 gi|89255540|ref|YP_512901.1| - 3.9 7.6 14.0 6.8 6.8 9.7 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF4064) DUF3568 PF12092.3 gi|89255541|ref|YP_512902.1| - 2.4e-31 108.1 4.4 2.8e-31 107.9 3.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3568) DUF4097 PF13349.1 gi|89255541|ref|YP_512902.1| - 0.02 14.4 4.0 0.022 14.2 2.7 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4097) DUF3568 PF12092.3 gi|89255542|ref|YP_512903.1| - 9.9e-46 154.6 6.6 1.1e-45 154.5 4.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3568) Prenylcys_lyase PF07156.9 gi|89255542|ref|YP_512903.1| - 0.0043 15.9 0.4 0.0051 15.7 0.3 1.1 1 0 0 1 1 1 1 Prenylcysteine lyase PTS_IIB PF02302.12 gi|89255542|ref|YP_512903.1| - 0.086 13.3 0.3 0.086 13.3 0.2 1.5 2 0 0 2 2 2 0 PTS system, Lactose/Cellobiose specific IIB subunit Lysis_col PF02402.11 gi|89255542|ref|YP_512903.1| - 0.098 12.2 1.6 0.17 11.5 1.1 1.3 1 0 0 1 1 1 0 Lysis protein DUF3568 PF12092.3 gi|89255543|ref|YP_512904.1| - 3.8e-45 152.8 3.5 4.2e-45 152.6 2.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3568) DDE_3 PF13358.1 gi|89255544|ref|YP_512905.1| - 5.3e-31 107.3 0.0 9e-31 106.5 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.11 gi|89255544|ref|YP_512905.1| - 1.6e-07 31.0 0.2 1.1e-06 28.3 0.1 2.1 2 0 0 2 2 2 1 Transposase DDE_1 PF03184.14 gi|89255544|ref|YP_512905.1| - 6e-07 28.8 0.1 9.5e-07 28.1 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_28 PF13518.1 gi|89255544|ref|YP_512905.1| - 0.00058 19.8 0.0 0.0018 18.2 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain rve PF00665.21 gi|89255544|ref|YP_512905.1| - 0.00072 19.6 0.0 0.0013 18.7 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.1 gi|89255544|ref|YP_512905.1| - 0.0087 15.6 0.0 0.029 14.0 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.1 gi|89255544|ref|YP_512905.1| - 0.02 15.0 0.0 0.032 14.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix DDE_Tnp_ISAZ013 PF07592.6 gi|89255544|ref|YP_512905.1| - 0.041 12.6 0.7 0.32 9.7 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain CENP-B_N PF04218.8 gi|89255544|ref|YP_512905.1| - 0.069 12.5 0.0 0.7 9.3 0.0 2.5 3 0 0 3 3 3 0 CENP-B N-terminal DNA-binding domain MFS_1 PF07690.11 gi|89255545|ref|YP_512906.1| - 1.6e-20 73.1 34.7 1.9e-20 72.9 24.0 1.0 1 0 0 1 1 1 1 Major Facilitator Superfamily MFS_2 PF13347.1 gi|89255545|ref|YP_512906.1| - 3.4e-07 29.0 28.2 3.4e-07 29.0 19.6 1.7 1 1 1 2 2 2 1 MFS/sugar transport protein Sugar_tr PF00083.19 gi|89255545|ref|YP_512906.1| - 0.058 11.9 26.7 0.054 12.0 2.4 2.3 1 1 0 2 2 2 0 Sugar (and other) transporter LacY_symp PF01306.14 gi|89255545|ref|YP_512906.1| - 3.6 6.0 34.2 1.8 7.0 9.2 3.2 1 1 0 2 2 2 0 LacY proton/sugar symporter DUF770 PF05591.7 gi|89255548|ref|YP_512909.1| - 3.1e-42 143.7 3.7 3.7e-42 143.5 2.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF770) DUF877 PF05943.7 gi|89255549|ref|YP_512910.1| - 2.5e-144 480.8 0.0 2.9e-144 480.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF877) IglC PF11550.3 gi|89255550|ref|YP_512911.1| - 1.1e-141 469.1 7.7 1.2e-141 469.0 5.3 1.0 1 0 0 1 1 1 1 Intracellular growth locus C protein DUF876 PF05936.7 gi|89255551|ref|YP_512912.1| - 0.00095 17.7 0.2 0.39 9.1 0.0 2.2 1 1 0 2 2 2 2 Bacterial protein of unknown function (DUF876) DUF2304 PF10066.4 gi|89255554|ref|YP_512915.1| - 1.9 8.3 9.5 5 7.0 0.3 2.6 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2304) DUF2077 PF09850.4 gi|89255556|ref|YP_512917.1| - 3.3e-10 39.7 0.0 3.8e-10 39.5 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2077) DUF4280 PF14107.1 gi|89255558|ref|YP_512919.1| - 1.1e-16 61.0 0.1 1.9e-16 60.3 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4280) DUF2345 PF10106.4 gi|89255560|ref|YP_512921.1| - 0.0056 16.2 12.1 0.36 10.4 1.0 3.0 1 1 2 3 3 3 3 Uncharacterized protein conserved in bacteria (DUF2345) DUF2807 PF10988.3 gi|89255560|ref|YP_512921.1| - 0.082 12.4 11.8 1.1 8.7 7.4 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF2807) DUF1499 PF07386.6 gi|89255560|ref|YP_512921.1| - 0.11 12.7 0.6 0.56 10.3 0.4 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF1499) DUF3540 PF12059.3 gi|89255560|ref|YP_512921.1| - 0.15 11.6 2.2 0.22 11.1 0.2 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3540) YbbR PF07949.7 gi|89255560|ref|YP_512921.1| - 0.99 9.5 5.1 0.57 10.3 1.4 2.0 1 1 0 2 2 2 0 YbbR-like protein Big_5 PF13205.1 gi|89255560|ref|YP_512921.1| - 2 9.0 6.9 0.78 10.3 1.6 2.0 1 1 1 2 2 2 0 Bacterial Ig-like domain DUF3979 PF13141.1 gi|89255561|ref|YP_512922.1| - 0.037 13.9 0.4 0.11 12.4 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3979) Peptidase_C3 PF00548.15 gi|89255561|ref|YP_512922.1| - 0.049 13.4 0.1 0.056 13.2 0.1 1.0 1 0 0 1 1 1 0 3C cysteine protease (picornain 3C) DUF1215 PF06744.7 gi|89255562|ref|YP_512923.1| - 0.002 17.7 0.0 0.0057 16.2 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF1215) 2-Hacid_dh PF00389.25 gi|89255564|ref|YP_512925.1| - 1.1e-16 60.5 0.0 1.4e-16 60.2 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 2-Hacid_dh_C PF02826.14 gi|89255564|ref|YP_512925.1| - 1.1e-10 40.9 0.0 1.6e-10 40.4 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DDE_3 PF13358.1 gi|89255565|ref|YP_512926.1| - 5.3e-31 107.3 0.0 9e-31 106.5 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.11 gi|89255565|ref|YP_512926.1| - 1.6e-07 31.0 0.2 1.1e-06 28.3 0.1 2.1 2 0 0 2 2 2 1 Transposase DDE_1 PF03184.14 gi|89255565|ref|YP_512926.1| - 6e-07 28.8 0.1 9.5e-07 28.1 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_28 PF13518.1 gi|89255565|ref|YP_512926.1| - 0.00058 19.8 0.0 0.0018 18.2 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain rve PF00665.21 gi|89255565|ref|YP_512926.1| - 0.00072 19.6 0.0 0.0013 18.7 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.1 gi|89255565|ref|YP_512926.1| - 0.0087 15.6 0.0 0.029 14.0 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.1 gi|89255565|ref|YP_512926.1| - 0.02 15.0 0.0 0.032 14.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix DDE_Tnp_ISAZ013 PF07592.6 gi|89255565|ref|YP_512926.1| - 0.041 12.6 0.7 0.32 9.7 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain CENP-B_N PF04218.8 gi|89255565|ref|YP_512926.1| - 0.069 12.5 0.0 0.7 9.3 0.0 2.5 3 0 0 3 3 3 0 CENP-B N-terminal DNA-binding domain HMGL-like PF00682.14 gi|89255566|ref|YP_512927.1| - 6.4e-30 104.5 0.0 9.7e-30 103.9 0.0 1.2 1 0 0 1 1 1 1 HMGL-like PTS-HPr PF00381.14 gi|89255566|ref|YP_512927.1| - 0.082 12.8 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 PTS HPr component phosphorylation site HMGL-like PF00682.14 gi|89255567|ref|YP_512928.1| - 2.9e-10 40.2 0.0 3.2e-10 40.0 0.0 1.0 1 0 0 1 1 1 1 HMGL-like Aminotran_4 PF01063.14 gi|89255568|ref|YP_512929.1| - 2.2e-37 128.7 0.0 2.6e-37 128.4 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class IV PEP-utilizers_C PF02896.13 gi|89255569|ref|YP_512930.1| - 2.7e-91 305.4 0.0 4e-91 304.9 0.0 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PPDK_N PF01326.14 gi|89255569|ref|YP_512930.1| - 1e-61 208.7 0.0 3.7e-61 206.9 0.0 1.8 1 1 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers PF00391.18 gi|89255569|ref|YP_512930.1| - 6.6e-20 70.4 0.1 1.6e-19 69.2 0.1 1.6 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain RNA_pol_Rpb1_4 PF05000.12 gi|89255569|ref|YP_512930.1| - 0.045 13.4 0.2 0.18 11.5 0.0 2.1 2 0 0 2 2 2 0 RNA polymerase Rpb1, domain 4 FeoB_N PF02421.13 gi|89255570|ref|YP_512931.1| - 5.3e-64 214.2 1.2 1.1e-63 213.2 0.8 1.5 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.9 gi|89255570|ref|YP_512931.1| - 1.2e-47 160.3 19.6 1.2e-32 112.0 0.3 3.3 3 0 0 3 3 3 2 Nucleoside recognition FeoB_C PF07664.7 gi|89255570|ref|YP_512931.1| - 2.7e-18 65.1 0.2 2.7e-18 65.1 0.2 3.0 3 0 0 3 3 2 1 Ferrous iron transport protein B C terminus MMR_HSR1 PF01926.18 gi|89255570|ref|YP_512931.1| - 8e-17 61.2 0.5 2.1e-16 59.9 0.3 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase SRPRB PF09439.5 gi|89255570|ref|YP_512931.1| - 7.8e-06 25.2 0.1 1.6e-05 24.1 0.0 1.5 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit AIG1 PF04548.11 gi|89255570|ref|YP_512931.1| - 9.4e-06 24.8 0.1 1.8e-05 23.9 0.1 1.3 1 0 0 1 1 1 1 AIG1 family PduV-EutP PF10662.4 gi|89255570|ref|YP_512931.1| - 0.00021 20.8 0.2 0.00047 19.6 0.1 1.7 1 0 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation Miro PF08477.8 gi|89255570|ref|YP_512931.1| - 0.0017 18.8 0.1 0.0037 17.7 0.0 1.6 1 0 0 1 1 1 1 Miro-like protein GTP_EFTU PF00009.22 gi|89255570|ref|YP_512931.1| - 0.003 17.0 0.9 0.072 12.5 0.6 2.8 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain Dynamin_N PF00350.18 gi|89255570|ref|YP_512931.1| - 0.0055 16.5 0.3 0.85 9.4 0.1 2.3 2 0 0 2 2 2 1 Dynamin family ABC_tran PF00005.22 gi|89255570|ref|YP_512931.1| - 0.036 14.3 0.0 0.071 13.4 0.0 1.5 1 0 0 1 1 1 0 ABC transporter DDE_3 PF13358.1 gi|89255572|ref|YP_512933.1| - 1.7e-31 108.9 0.0 2.8e-31 108.2 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.11 gi|89255572|ref|YP_512933.1| - 1.5e-07 31.0 0.2 1.1e-06 28.3 0.1 2.1 2 0 0 2 2 2 1 Transposase DDE_1 PF03184.14 gi|89255572|ref|YP_512933.1| - 5.8e-07 28.8 0.1 9.5e-07 28.1 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_28 PF13518.1 gi|89255572|ref|YP_512933.1| - 0.00058 19.8 0.0 0.0018 18.2 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain rve PF00665.21 gi|89255572|ref|YP_512933.1| - 0.00072 19.6 0.0 0.0013 18.7 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.1 gi|89255572|ref|YP_512933.1| - 0.0087 15.6 0.0 0.029 14.0 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.1 gi|89255572|ref|YP_512933.1| - 0.02 15.0 0.0 0.032 14.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix DDE_Tnp_ISAZ013 PF07592.6 gi|89255572|ref|YP_512933.1| - 0.039 12.6 0.6 0.32 9.7 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain LuxQ-periplasm PF09308.5 gi|89255573|ref|YP_512934.1| - 0.011 15.1 0.8 0.02 14.2 0.5 1.4 1 0 0 1 1 1 0 LuxQ, periplasmic Lipoprotein_9 PF03180.9 gi|89255573|ref|YP_512934.1| - 0.011 14.6 0.6 0.022 13.6 0.4 1.4 1 0 0 1 1 1 0 NLPA lipoprotein Glyco_transf_90 PF05686.7 gi|89255574|ref|YP_512935.1| - 6.5e-21 74.4 1.9 9.3e-21 73.9 1.3 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 90 Glyco_trans_1_2 PF13524.1 gi|89255574|ref|YP_512935.1| - 0.0016 18.6 0.0 0.0045 17.2 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 RNB PF00773.14 gi|89255575|ref|YP_512936.1| - 6.5e-64 216.2 0.0 6.5e-64 216.2 0.0 2.5 3 0 0 3 3 3 1 RNB domain Abhydrolase_2 PF02230.11 gi|89255576|ref|YP_512937.1| - 8.1e-63 211.7 0.2 9e-63 211.5 0.1 1.0 1 0 0 1 1 1 1 Phospholipase/Carboxylesterase Abhydrolase_5 PF12695.2 gi|89255576|ref|YP_512937.1| - 2.7e-12 46.6 0.1 5.4e-12 45.6 0.0 1.5 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|89255576|ref|YP_512937.1| - 5.9e-07 29.6 0.2 0.0029 17.5 0.1 2.6 1 1 1 2 2 2 2 Alpha/beta hydrolase family FSH1 PF03959.8 gi|89255576|ref|YP_512937.1| - 1.4e-05 24.6 0.0 5.2e-05 22.8 0.0 1.9 1 1 0 1 1 1 1 Serine hydrolase (FSH1) Abhydrolase_3 PF07859.8 gi|89255576|ref|YP_512937.1| - 5.5e-05 22.8 0.2 0.0038 16.8 0.0 2.1 1 1 1 2 2 2 1 alpha/beta hydrolase fold Esterase PF00756.15 gi|89255576|ref|YP_512937.1| - 0.0015 17.9 0.0 0.0023 17.3 0.0 1.4 1 1 0 1 1 1 1 Putative esterase DLH PF01738.13 gi|89255576|ref|YP_512937.1| - 0.0039 16.5 0.0 0.0055 16.0 0.0 1.2 1 0 0 1 1 1 1 Dienelactone hydrolase family DUF2974 PF11187.3 gi|89255576|ref|YP_512937.1| - 0.0058 16.0 0.0 0.0092 15.3 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2974) Abhydrolase_1 PF00561.15 gi|89255576|ref|YP_512937.1| - 0.01 15.4 0.6 0.51 9.8 0.1 2.1 1 1 1 2 2 2 0 alpha/beta hydrolase fold DUF676 PF05057.9 gi|89255576|ref|YP_512937.1| - 0.017 14.4 0.1 0.027 13.7 0.0 1.3 1 0 0 1 1 1 0 Putative serine esterase (DUF676) Peptidase_S9 PF00326.16 gi|89255576|ref|YP_512937.1| - 0.021 14.0 0.4 0.59 9.3 0.0 2.3 1 1 1 2 2 2 0 Prolyl oligopeptidase family PE-PPE PF08237.6 gi|89255576|ref|YP_512937.1| - 0.12 11.7 0.1 0.17 11.3 0.0 1.2 1 0 0 1 1 1 0 PE-PPE domain Porphobil_deam PF01379.15 gi|89255577|ref|YP_512938.1| - 1.8e-84 281.9 0.0 2.5e-84 281.4 0.0 1.1 1 0 0 1 1 1 1 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.10 gi|89255577|ref|YP_512938.1| - 1e-19 70.4 0.1 1.9e-19 69.4 0.1 1.4 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain SBP_bac_3 PF00497.15 gi|89255577|ref|YP_512938.1| - 0.066 12.4 0.0 0.12 11.6 0.0 1.4 1 0 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 CRCB PF02537.10 gi|89255578|ref|YP_512939.1| - 8.7e-28 96.5 8.5 9.6e-28 96.4 5.9 1.0 1 0 0 1 1 1 1 CrcB-like protein Gpi1 PF05024.10 gi|89255578|ref|YP_512939.1| - 0.0068 16.0 1.8 0.008 15.8 1.3 1.2 1 0 0 1 1 1 1 N-acetylglucosaminyl transferase component (Gpi1) ThiW PF09512.5 gi|89255578|ref|YP_512939.1| - 0.11 12.3 5.1 0.12 12.1 3.5 1.1 1 0 0 1 1 1 0 Thiamine-precursor transporter protein (ThiW) DUF3169 PF11368.3 gi|89255578|ref|YP_512939.1| - 2.1 7.4 11.7 1.7 7.7 0.3 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF3169) UN_NPL4 PF11543.3 gi|89255579|ref|YP_512940.1| - 0.052 13.8 0.0 0.087 13.1 0.0 1.6 1 1 0 1 1 1 0 Nuclear pore localisation protein NPL4 Stap_Strp_toxin PF01123.15 gi|89255580|ref|YP_512941.1| - 0.083 13.3 1.3 0.12 12.8 0.9 1.3 1 0 0 1 1 1 0 Staphylococcal/Streptococcal toxin, OB-fold domain Romo1 PF10247.4 gi|89255580|ref|YP_512941.1| - 5.1 7.3 17.3 0.5 10.5 1.9 2.3 2 0 0 2 2 2 0 Reactive mitochondrial oxygen species modulator 1 SseC PF04888.7 gi|89255580|ref|YP_512941.1| - 7.2 5.8 8.7 8.5 5.6 6.0 1.1 1 0 0 1 1 1 0 Secretion system effector C (SseC) like family zf-CHCC PF10276.4 gi|89255581|ref|YP_512942.1| - 8e-13 48.0 0.7 1e-12 47.6 0.5 1.2 1 0 0 1 1 1 1 Zinc-finger domain COX5B PF01215.14 gi|89255581|ref|YP_512942.1| - 0.0071 16.0 0.2 0.0071 16.0 0.1 1.1 1 0 0 1 1 1 1 Cytochrome c oxidase subunit Vb PyrI_C PF02748.10 gi|89255581|ref|YP_512942.1| - 0.023 14.1 0.6 0.033 13.6 0.4 1.3 1 0 0 1 1 1 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain zinc_ribbon_2 PF13240.1 gi|89255581|ref|YP_512942.1| - 0.025 14.0 1.2 0.026 14.0 0.2 1.6 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.4 gi|89255581|ref|YP_512942.1| - 0.073 12.7 0.1 0.073 12.7 0.1 1.6 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-RING_3 PF14369.1 gi|89255581|ref|YP_512942.1| - 0.098 12.6 0.1 0.47 10.5 0.0 1.9 2 0 0 2 2 2 0 zinc-finger zf-ribbon_3 PF13248.1 gi|89255581|ref|YP_512942.1| - 0.1 11.8 1.4 0.11 11.7 0.1 1.7 2 0 0 2 2 2 0 zinc-ribbon domain Rad50_zn_hook PF04423.9 gi|89255581|ref|YP_512942.1| - 0.12 11.8 0.9 0.14 11.6 0.1 1.6 2 0 0 2 2 2 0 Rad50 zinc hook motif zinc_ribbon_4 PF13717.1 gi|89255581|ref|YP_512942.1| - 0.14 11.8 0.8 0.63 9.7 0.2 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Cys_rich_CPXG PF14255.1 gi|89255581|ref|YP_512942.1| - 0.15 11.8 0.2 0.15 11.8 0.1 1.8 2 1 0 2 2 2 0 Cysteine-rich CPXCG zinc_ribbon_5 PF13719.1 gi|89255581|ref|YP_512942.1| - 0.2 11.2 2.6 0.26 10.9 0.2 2.1 2 1 0 2 2 2 0 zinc-ribbon domain zf-C2HC_2 PF13913.1 gi|89255581|ref|YP_512942.1| - 0.39 10.4 1.9 0.57 9.9 0.2 1.9 2 0 0 2 2 2 0 zinc-finger of a C2HC-type zf-C2H2 PF00096.21 gi|89255581|ref|YP_512942.1| - 0.42 11.0 0.7 0.42 11.0 0.5 1.8 2 0 0 2 2 2 0 Zinc finger, C2H2 type BPD_transp_1 PF00528.17 gi|89255582|ref|YP_512943.1| - 6.6e-24 84.4 32.9 2.2e-14 53.4 12.1 4.2 2 2 1 3 3 3 2 Binding-protein-dependent transport system inner membrane component DUF3789 PF12664.2 gi|89255582|ref|YP_512943.1| - 0.18 11.1 2.1 0.49 9.7 1.4 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3789) AAA_assoc_C PF09821.4 gi|89255583|ref|YP_512944.1| - 6.5e-43 145.8 0.0 1.3e-42 144.8 0.0 1.5 1 0 0 1 1 1 1 C-terminal AAA-associated domain ABC_tran PF00005.22 gi|89255583|ref|YP_512944.1| - 2.7e-33 115.1 0.0 4.8e-33 114.3 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|89255583|ref|YP_512944.1| - 2.7e-08 34.1 1.5 0.0012 18.8 0.0 2.8 2 1 1 3 3 3 2 AAA domain AAA_29 PF13555.1 gi|89255583|ref|YP_512944.1| - 4.6e-05 22.8 0.1 9.5e-05 21.8 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|89255583|ref|YP_512944.1| - 0.00011 21.4 0.0 0.16 11.0 0.0 2.2 2 0 0 2 2 2 2 AAA ATPase domain DUF258 PF03193.11 gi|89255583|ref|YP_512944.1| - 0.00047 19.3 0.7 0.00074 18.7 0.1 1.5 2 0 0 2 2 1 1 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|89255583|ref|YP_512944.1| - 0.0017 18.7 0.0 0.0028 17.9 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|89255583|ref|YP_512944.1| - 0.0027 17.6 0.0 0.01 15.8 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_18 PF13238.1 gi|89255583|ref|YP_512944.1| - 0.0086 16.3 0.1 0.055 13.7 0.0 2.4 2 1 1 3 3 2 1 AAA domain AAA_19 PF13245.1 gi|89255583|ref|YP_512944.1| - 0.0087 15.7 0.4 0.099 12.4 0.0 2.4 2 0 0 2 2 2 1 Part of AAA domain AAA_25 PF13481.1 gi|89255583|ref|YP_512944.1| - 0.013 14.9 0.0 0.054 12.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|89255583|ref|YP_512944.1| - 0.015 14.9 0.1 0.028 14.0 0.1 1.4 1 0 0 1 1 1 0 NACHT domain FtsK_SpoIIIE PF01580.13 gi|89255583|ref|YP_512944.1| - 0.019 14.4 0.0 0.17 11.3 0.0 2.1 1 1 0 1 1 1 0 FtsK/SpoIIIE family AAA_10 PF12846.2 gi|89255583|ref|YP_512944.1| - 0.021 14.2 0.1 0.064 12.6 0.0 1.8 2 1 0 2 2 2 0 AAA-like domain DUF87 PF01935.12 gi|89255583|ref|YP_512944.1| - 0.025 14.4 1.5 0.24 11.1 0.3 2.3 2 0 0 2 2 2 0 Domain of unknown function DUF87 UPF0079 PF02367.12 gi|89255583|ref|YP_512944.1| - 0.027 14.1 0.3 0.12 11.9 0.1 2.1 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 MobB PF03205.9 gi|89255583|ref|YP_512944.1| - 0.034 13.8 0.1 0.12 12.0 0.1 2.0 2 0 0 2 2 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.1 gi|89255583|ref|YP_512944.1| - 0.09 12.6 0.1 0.2 11.5 0.1 1.6 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|89255583|ref|YP_512944.1| - 0.095 12.8 0.5 0.32 11.1 0.2 2.1 1 1 1 2 2 2 0 AAA domain G-alpha PF00503.15 gi|89255583|ref|YP_512944.1| - 0.1 11.2 0.1 0.17 10.4 0.1 1.4 1 1 0 1 1 1 0 G-protein alpha subunit Miro PF08477.8 gi|89255583|ref|YP_512944.1| - 0.1 13.0 0.1 0.85 10.1 0.1 2.2 2 0 0 2 2 2 0 Miro-like protein CbiA PF01656.18 gi|89255583|ref|YP_512944.1| - 0.11 11.8 2.2 1.8 7.9 1.5 2.5 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain MMR_HSR1 PF01926.18 gi|89255583|ref|YP_512944.1| - 0.11 12.4 0.7 0.33 10.9 0.2 2.2 1 1 0 2 2 2 0 50S ribosome-binding GTPase Ribosomal_L50 PF10501.4 gi|89255583|ref|YP_512944.1| - 0.11 12.4 0.0 0.21 11.5 0.0 1.5 1 0 0 1 1 1 0 Ribosomal subunit 39S ABC_ATPase PF09818.4 gi|89255583|ref|YP_512944.1| - 0.13 10.8 0.6 2.5 6.6 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_17 PF13207.1 gi|89255583|ref|YP_512944.1| - 0.27 12.0 3.8 0.34 11.7 0.3 2.5 2 2 0 2 2 2 0 AAA domain DUF3573 PF12097.3 gi|89255584|ref|YP_512945.1| - 2.2e-171 569.6 26.7 2.2e-171 569.6 18.5 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF3573) DUF3561 PF12084.3 gi|89255584|ref|YP_512945.1| - 0.0099 15.7 0.1 0.031 14.1 0.1 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF3561) Wbp11 PF09429.5 gi|89255584|ref|YP_512945.1| - 0.18 11.8 0.2 0.29 11.1 0.1 1.2 1 0 0 1 1 1 0 WW domain binding protein 11 Na_H_Exchanger PF00999.16 gi|89255585|ref|YP_512946.1| - 3.6e-34 117.9 54.1 4.8e-34 117.5 37.5 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.13 gi|89255585|ref|YP_512946.1| - 0.00044 20.2 0.0 0.00085 19.3 0.0 1.5 1 0 0 1 1 1 1 TrkA-N domain Hexapep PF00132.19 gi|89255586|ref|YP_512947.1| - 3.3e-16 57.9 6.1 1.3e-06 27.6 0.1 4.2 3 1 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|89255586|ref|YP_512947.1| - 0.92 9.1 12.1 0.22 11.1 3.1 3.5 3 1 0 4 4 4 0 Hexapeptide repeat of succinyl-transferase LolB PF03550.9 gi|89255587|ref|YP_512948.1| - 5.4e-36 123.5 0.4 6.9e-36 123.1 0.3 1.1 1 0 0 1 1 1 1 Outer membrane lipoprotein LolB DUF4292 PF14125.1 gi|89255587|ref|YP_512948.1| - 0.012 15.0 0.2 0.024 14.0 0.1 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4292) GHMP_kinases_N PF00288.21 gi|89255588|ref|YP_512949.1| - 1.5e-11 44.1 0.0 3.3e-11 43.0 0.0 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|89255588|ref|YP_512949.1| - 0.00081 19.5 0.0 0.0016 18.6 0.0 1.4 1 0 0 1 1 1 1 GHMP kinases C terminal Cg6151-P PF10233.4 gi|89255589|ref|YP_512950.1| - 0.083 12.8 1.2 0.1 12.5 0.8 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein CG6151-P DDE_3 PF13358.1 gi|89255590|ref|YP_512951.1| - 1.7e-31 108.9 0.0 2.8e-31 108.2 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.11 gi|89255590|ref|YP_512951.1| - 1.5e-07 31.0 0.2 1.1e-06 28.3 0.1 2.1 2 0 0 2 2 2 1 Transposase DDE_1 PF03184.14 gi|89255590|ref|YP_512951.1| - 5.8e-07 28.8 0.1 9.5e-07 28.1 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_28 PF13518.1 gi|89255590|ref|YP_512951.1| - 0.00058 19.8 0.0 0.0018 18.2 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain rve PF00665.21 gi|89255590|ref|YP_512951.1| - 0.00072 19.6 0.0 0.0013 18.7 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.1 gi|89255590|ref|YP_512951.1| - 0.0087 15.6 0.0 0.029 14.0 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.1 gi|89255590|ref|YP_512951.1| - 0.02 15.0 0.0 0.032 14.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix DDE_Tnp_ISAZ013 PF07592.6 gi|89255590|ref|YP_512951.1| - 0.039 12.6 0.6 0.32 9.7 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain PHO4 PF01384.15 gi|89255591|ref|YP_512952.1| - 8.5e-92 307.2 34.0 1.1e-91 306.9 23.6 1.1 1 0 0 1 1 1 1 Phosphate transporter family DUF1455 PF07306.6 gi|89255591|ref|YP_512952.1| - 0.015 15.3 1.0 0.015 15.3 0.7 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF1455) HemY_N PF07219.8 gi|89255591|ref|YP_512952.1| - 6 6.4 6.7 0.28 10.7 0.4 2.0 2 0 0 2 2 2 0 HemY protein N-terminus HTH_11 PF08279.7 gi|89255592|ref|YP_512953.1| - 0.038 13.6 2.1 0.074 12.7 0.3 2.2 2 0 0 2 2 2 0 HTH domain HTH_24 PF13412.1 gi|89255592|ref|YP_512953.1| - 0.06 12.7 0.7 0.2 11.0 0.1 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|89255592|ref|YP_512953.1| - 0.11 12.2 0.1 0.3 10.7 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family MRL1 PF13003.2 gi|89255592|ref|YP_512953.1| - 0.27 11.0 3.7 9.6 6.0 0.2 2.4 1 1 1 2 2 2 0 Ribosomal protein L1 Latarcin PF10279.4 gi|89255592|ref|YP_512953.1| - 0.48 10.6 2.4 0.91 9.7 0.2 2.5 2 2 0 2 2 2 0 Latarcin precursor PhoU PF01895.14 gi|89255592|ref|YP_512953.1| - 6.6 7.2 9.5 0.31 11.5 0.5 2.6 1 1 1 2 2 2 0 PhoU domain Phosphoesterase PF04185.9 gi|89255593|ref|YP_512954.1| - 9.8e-113 377.1 10.5 1.2e-112 376.8 7.3 1.1 1 0 0 1 1 1 1 Phosphoesterase family AHS2 PF02626.10 gi|89255594|ref|YP_512955.1| - 2.2e-56 191.1 0.0 3.9e-37 128.0 0.0 2.0 1 1 1 2 2 2 2 Allophanate hydrolase subunit 2 LamB_YcsF PF03746.11 gi|89255595|ref|YP_512956.1| - 3.4e-35 121.2 0.0 4.7e-35 120.8 0.0 1.2 1 0 0 1 1 1 1 LamB/YcsF family Methyltransf_PK PF05891.7 gi|89255595|ref|YP_512956.1| - 0.00031 20.1 0.0 0.00075 18.8 0.0 1.6 2 1 0 2 2 2 1 AdoMet dependent proline di-methyltransferase DOPA_dioxygen PF08883.6 gi|89255595|ref|YP_512956.1| - 0.032 14.2 0.0 0.053 13.6 0.0 1.3 1 0 0 1 1 1 0 Dopa 4,5-dioxygenase family MFS_1 PF07690.11 gi|89255596|ref|YP_512957.1| - 1e-08 34.3 16.5 1e-08 34.3 11.4 1.7 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|89255596|ref|YP_512957.1| - 0.022 13.1 25.3 0.062 11.6 17.5 1.7 1 1 0 1 1 1 0 MFS/sugar transport protein DUF1624 PF07786.7 gi|89255597|ref|YP_512958.1| - 0.26 10.6 3.4 0.27 10.5 2.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1624) DDE_3 PF13358.1 gi|89255598|ref|YP_512959.1| - 1.7e-31 108.9 0.0 2.8e-31 108.2 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.11 gi|89255598|ref|YP_512959.1| - 1.5e-07 31.0 0.2 1.1e-06 28.3 0.1 2.1 2 0 0 2 2 2 1 Transposase DDE_1 PF03184.14 gi|89255598|ref|YP_512959.1| - 5.8e-07 28.8 0.1 9.5e-07 28.1 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_28 PF13518.1 gi|89255598|ref|YP_512959.1| - 0.00058 19.8 0.0 0.0018 18.2 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain rve PF00665.21 gi|89255598|ref|YP_512959.1| - 0.00072 19.6 0.0 0.0013 18.7 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.1 gi|89255598|ref|YP_512959.1| - 0.0087 15.6 0.0 0.029 14.0 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.1 gi|89255598|ref|YP_512959.1| - 0.02 15.0 0.0 0.032 14.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix DDE_Tnp_ISAZ013 PF07592.6 gi|89255598|ref|YP_512959.1| - 0.039 12.6 0.6 0.32 9.7 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain Usp PF00582.21 gi|89255600|ref|YP_512961.1| - 8.2e-50 168.6 2.7 2.8e-26 92.3 1.2 2.1 2 0 0 2 2 2 2 Universal stress protein family DeoRC PF00455.17 gi|89255600|ref|YP_512961.1| - 0.0063 16.1 0.6 0.41 10.2 0.0 2.8 2 1 0 2 2 2 1 DeoR C terminal sensor domain DUF3834 PF12916.2 gi|89255600|ref|YP_512961.1| - 0.027 13.4 2.5 0.058 12.4 1.7 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3834) DUF3579 PF12112.3 gi|89255600|ref|YP_512961.1| - 0.028 14.3 1.0 4.6 7.2 0.0 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF3579) B12-binding PF02310.14 gi|89255600|ref|YP_512961.1| - 0.081 12.7 0.1 1 9.2 0.0 2.4 2 1 1 3 3 3 0 B12 binding domain Toxin_40 PF15520.1 gi|89255600|ref|YP_512961.1| - 0.13 11.6 0.1 0.94 8.9 0.0 2.1 2 0 0 2 2 2 0 Putative toxin 40 DUF3427 PF11907.3 gi|89255601|ref|YP_512962.1| - 1.8e-46 158.3 9.6 1.8e-46 158.3 6.7 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF3427) ResIII PF04851.10 gi|89255601|ref|YP_512962.1| - 3.1e-29 102.1 1.1 3.1e-29 102.1 0.8 2.5 3 0 0 3 3 3 1 Type III restriction enzyme, res subunit PLDc_2 PF13091.1 gi|89255601|ref|YP_512962.1| - 1.4e-16 60.4 2.0 2.4e-16 59.5 0.4 2.2 2 0 0 2 2 2 1 PLD-like domain Helicase_C PF00271.26 gi|89255601|ref|YP_512962.1| - 6.3e-15 54.7 1.1 4.4e-14 52.0 0.0 3.0 3 0 0 3 3 3 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|89255601|ref|YP_512962.1| - 2.1e-07 30.5 1.2 4.9e-07 29.3 0.1 2.2 2 1 1 3 3 3 1 DEAD/DEAH box helicase SNF2_N PF00176.18 gi|89255601|ref|YP_512962.1| - 0.00018 20.3 0.0 0.00045 19.1 0.0 1.7 1 0 0 1 1 1 1 SNF2 family N-terminal domain AAA_22 PF13401.1 gi|89255601|ref|YP_512962.1| - 0.00096 19.2 0.1 0.014 15.5 0.0 2.6 2 0 0 2 2 2 1 AAA domain Helicase_C_2 PF13307.1 gi|89255601|ref|YP_512962.1| - 0.016 15.1 1.6 0.59 10.0 0.0 3.1 2 1 1 3 3 3 0 Helicase C-terminal domain HAD PF12710.2 gi|89255601|ref|YP_512962.1| - 0.055 13.6 1.2 2.6 8.1 0.0 3.5 1 1 1 3 3 3 0 haloacid dehalogenase-like hydrolase KGK PF08872.5 gi|89255601|ref|YP_512962.1| - 0.26 11.4 4.7 6.7 6.9 0.1 4.3 4 0 0 4 4 4 0 KGK domain RCC1_2 PF13540.1 gi|89255602|ref|YP_512963.1| - 7.4e-19 66.8 7.2 1.9e-08 33.6 0.0 3.9 4 0 0 4 4 4 3 Regulator of chromosome condensation (RCC1) repeat RCC1 PF00415.13 gi|89255602|ref|YP_512963.1| - 2.5e-17 62.8 0.6 3e-06 27.3 0.0 4.3 4 0 0 4 4 4 3 Regulator of chromosome condensation (RCC1) repeat DUF1459 PF07312.6 gi|89255602|ref|YP_512963.1| - 0.00069 19.4 1.3 0.054 13.4 0.0 2.9 3 0 0 3 3 3 1 Protein of unknown function (DUF1459) PGP_phosphatase PF09419.5 gi|89255603|ref|YP_512964.1| - 8.9e-09 34.9 0.0 1.8e-08 33.8 0.0 1.5 1 1 0 1 1 1 1 Mitochondrial PGP phosphatase HAD_2 PF13419.1 gi|89255603|ref|YP_512964.1| - 5.1e-05 23.5 0.0 0.00011 22.4 0.0 1.7 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase DUF4538 PF15061.1 gi|89255603|ref|YP_512964.1| - 0.003 16.8 0.0 0.0056 15.9 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4538) Hydrolase_like PF13242.1 gi|89255603|ref|YP_512964.1| - 0.0055 16.3 0.0 0.0088 15.7 0.0 1.3 1 0 0 1 1 1 1 HAD-hyrolase-like FKBP_N PF01346.13 gi|89255604|ref|YP_512965.1| - 1.4e-06 28.3 0.8 0.00025 21.0 0.5 2.8 1 1 0 2 2 2 2 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase TP_methylase PF00590.15 gi|89255605|ref|YP_512966.1| - 1.1e-36 126.4 0.0 1.6e-36 125.9 0.0 1.2 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Mur_ligase_M PF08245.7 gi|89255606|ref|YP_512967.1| - 3.1e-21 76.2 0.2 4.4e-21 75.7 0.1 1.2 1 0 0 1 1 1 1 Mur ligase middle domain Mur_ligase_C PF02875.16 gi|89255606|ref|YP_512967.1| - 3.1e-18 65.5 0.0 1.9e-17 63.0 0.0 2.2 2 0 0 2 2 2 1 Mur ligase family, glutamate ligase domain Mur_ligase PF01225.20 gi|89255606|ref|YP_512967.1| - 5.1e-09 36.0 0.2 1.1e-08 35.0 0.2 1.6 1 0 0 1 1 1 1 Mur ligase family, catalytic domain 2-Hacid_dh_C PF02826.14 gi|89255606|ref|YP_512967.1| - 0.047 12.8 0.0 0.084 12.0 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Shikimate_dh_N PF08501.6 gi|89255607|ref|YP_512968.1| - 9.1e-22 76.9 0.1 1.9e-21 75.8 0.1 1.6 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain Shikimate_DH PF01488.15 gi|89255607|ref|YP_512968.1| - 1.2e-15 57.8 0.2 6.4e-15 55.4 0.0 2.0 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase Saccharop_dh PF03435.13 gi|89255607|ref|YP_512968.1| - 0.00043 19.3 0.1 0.0007 18.6 0.1 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase NAD_binding_7 PF13241.1 gi|89255607|ref|YP_512968.1| - 0.0043 17.2 0.3 0.018 15.2 0.0 2.0 2 0 0 2 2 2 1 Putative NAD(P)-binding GARS_N PF02844.10 gi|89255607|ref|YP_512968.1| - 0.043 14.2 0.2 0.17 12.3 0.0 2.0 2 1 0 2 2 2 0 Phosphoribosylglycinamide synthetase, N domain THF_DHG_CYH_C PF02882.14 gi|89255607|ref|YP_512968.1| - 0.091 11.8 0.0 0.15 11.1 0.0 1.4 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Ribosomal_L34 PF00468.12 gi|89255609|ref|YP_512970.1| - 2.1e-24 84.9 11.5 2.2e-24 84.8 8.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L34 Ribonuclease_P PF00825.13 gi|89255610|ref|YP_512971.1| - 1.6e-18 66.6 0.7 1.7e-18 66.5 0.5 1.0 1 0 0 1 1 1 1 Ribonuclease P UAE_UbL PF14732.1 gi|89255610|ref|YP_512971.1| - 0.016 15.2 0.2 0.082 13.0 0.0 1.9 2 0 0 2 2 2 0 Ubiquitin/SUMO-activating enzyme ubiquitin-like domain Complex1_LYR PF05347.10 gi|89255610|ref|YP_512971.1| - 0.017 14.9 0.4 0.11 12.2 0.1 2.2 2 0 0 2 2 2 0 Complex 1 protein (LYR family) DUF968 PF06147.6 gi|89255610|ref|YP_512971.1| - 0.03 14.2 0.1 0.033 14.0 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF968) YqcI_YcgG PF08892.6 gi|89255610|ref|YP_512971.1| - 0.086 12.3 0.2 0.1 12.1 0.2 1.1 1 0 0 1 1 1 0 YqcI/YcgG family Complex1_LYR_1 PF13232.1 gi|89255610|ref|YP_512971.1| - 0.087 13.0 0.8 0.55 10.4 0.1 2.2 1 1 0 2 2 2 0 Complex1_LYR-like Haemolytic PF01809.13 gi|89255611|ref|YP_512972.1| - 8.7e-28 95.7 1.8 1e-27 95.4 1.2 1.1 1 0 0 1 1 1 1 Haemolytic domain Whib PF02467.11 gi|89255611|ref|YP_512972.1| - 0.044 14.0 0.0 0.059 13.6 0.0 1.2 1 0 0 1 1 1 0 Transcription factor WhiB 60KD_IMP PF02096.15 gi|89255612|ref|YP_512973.1| - 1.1e-70 237.3 9.6 1.1e-70 237.3 6.6 2.2 2 0 0 2 2 2 1 60Kd inner membrane protein YidC_periplas PF14849.1 gi|89255612|ref|YP_512973.1| - 2e-52 178.7 5.0 2e-52 178.7 3.5 1.5 2 0 0 2 2 2 1 YidC periplasmic domain DUF4380 PF14315.1 gi|89255612|ref|YP_512973.1| - 0.024 13.8 0.0 0.039 13.1 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4380) Vpu PF00558.14 gi|89255612|ref|YP_512973.1| - 0.038 13.5 0.0 0.095 12.2 0.0 1.7 1 0 0 1 1 1 0 Vpu protein Lip_A_acyltrans PF03279.8 gi|89255613|ref|YP_512974.1| - 1.2e-65 221.2 0.7 1.4e-65 221.1 0.5 1.0 1 0 0 1 1 1 1 Bacterial lipid A biosynthesis acyltransferase Lip_A_acyltrans PF03279.8 gi|89255614|ref|YP_512975.1| - 9.4e-58 195.3 0.0 1.2e-57 195.0 0.0 1.0 1 0 0 1 1 1 1 Bacterial lipid A biosynthesis acyltransferase N_methyl PF07963.7 gi|89255615|ref|YP_512976.1| - 4.4e-07 29.2 3.0 7e-07 28.6 2.1 1.3 1 0 0 1 1 1 1 Prokaryotic N-terminal methylation motif N_methyl_2 PF13544.1 gi|89255615|ref|YP_512976.1| - 6.4e-07 28.5 0.8 1e-06 27.9 0.6 1.4 1 0 0 1 1 1 1 Type IV pilin N-term methylation site GFxxxE N_methyl_3 PF13633.1 gi|89255615|ref|YP_512976.1| - 0.00044 19.9 5.4 0.00076 19.1 3.7 1.4 1 0 0 1 1 1 1 Prokaryotic N-terminal methylation site Bundlin PF05307.6 gi|89255615|ref|YP_512976.1| - 0.0009 19.0 1.1 0.0015 18.4 0.5 1.5 1 1 1 2 2 2 1 Bundlin EFP_N PF08207.7 gi|89255616|ref|YP_512977.1| - 1.5e-27 95.2 1.8 2.4e-26 91.3 0.5 2.4 2 0 0 2 2 2 1 Elongation factor P (EF-P) KOW-like domain Elong-fact-P_C PF09285.6 gi|89255616|ref|YP_512977.1| - 2e-26 91.1 0.5 3.6e-26 90.2 0.4 1.5 1 0 0 1 1 1 1 Elongation factor P, C-terminal EFP PF01132.15 gi|89255616|ref|YP_512977.1| - 2e-22 78.5 2.1 3.4e-22 77.8 1.4 1.4 1 0 0 1 1 1 1 Elongation factor P (EF-P) OB domain DUF3571 PF12095.3 gi|89255616|ref|YP_512977.1| - 0.023 14.9 0.1 0.048 13.9 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3571) RNase_T PF00929.19 gi|89255617|ref|YP_512978.1| - 1.1e-30 107.0 0.1 1.4e-30 106.7 0.1 1.1 1 0 0 1 1 1 1 Exonuclease PUD PF03714.9 gi|89255618|ref|YP_512979.1| - 0.0044 17.1 0.0 0.0049 16.9 0.0 1.0 1 0 0 1 1 1 1 Bacterial pullanase-associated domain DHC PF09626.5 gi|89255618|ref|YP_512979.1| - 0.032 14.8 0.0 0.034 14.7 0.0 1.1 1 0 0 1 1 1 0 Dihaem cytochrome c Self-incomp_S1 PF05938.6 gi|89255618|ref|YP_512979.1| - 0.05 13.7 0.3 0.059 13.4 0.2 1.1 1 0 0 1 1 1 0 Plant self-incompatibility protein S1 DDE_3 PF13358.1 gi|89255619|ref|YP_512980.1| - 5.3e-31 107.3 0.0 9e-31 106.5 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.11 gi|89255619|ref|YP_512980.1| - 1.6e-07 31.0 0.2 1.1e-06 28.3 0.1 2.1 2 0 0 2 2 2 1 Transposase DDE_1 PF03184.14 gi|89255619|ref|YP_512980.1| - 6e-07 28.8 0.1 9.5e-07 28.1 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_28 PF13518.1 gi|89255619|ref|YP_512980.1| - 0.00058 19.8 0.0 0.0018 18.2 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain rve PF00665.21 gi|89255619|ref|YP_512980.1| - 0.00072 19.6 0.0 0.0013 18.7 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.1 gi|89255619|ref|YP_512980.1| - 0.0087 15.6 0.0 0.029 14.0 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.1 gi|89255619|ref|YP_512980.1| - 0.02 15.0 0.0 0.032 14.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix DDE_Tnp_ISAZ013 PF07592.6 gi|89255619|ref|YP_512980.1| - 0.041 12.6 0.7 0.32 9.7 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain CENP-B_N PF04218.8 gi|89255619|ref|YP_512980.1| - 0.069 12.5 0.0 0.7 9.3 0.0 2.5 3 0 0 3 3 3 0 CENP-B N-terminal DNA-binding domain MFS_1 PF07690.11 gi|89255620|ref|YP_512981.1| - 1e-34 119.8 38.6 1.3e-34 119.4 26.7 1.0 1 0 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|89255620|ref|YP_512981.1| - 2.8e-12 45.9 8.9 2.8e-12 45.9 6.2 2.4 1 1 1 2 2 2 1 Sugar (and other) transporter MFS_2 PF13347.1 gi|89255620|ref|YP_512981.1| - 3.6e-08 32.2 2.1 3.6e-08 32.2 1.5 2.1 1 1 1 2 2 2 2 MFS/sugar transport protein DUF4191 PF13829.1 gi|89255620|ref|YP_512981.1| - 0.18 10.8 5.3 0.12 11.4 0.8 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4191) Bac_export_2 PF01312.14 gi|89255620|ref|YP_512981.1| - 3.4 6.4 12.8 2.9 6.6 7.7 1.8 1 1 0 1 1 1 0 FlhB HrpN YscU SpaS Family SBP_bac_3 PF00497.15 gi|89255621|ref|YP_512982.1| - 3.7e-31 108.1 2.0 4.4e-31 107.8 1.4 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 ComX PF05952.7 gi|89255621|ref|YP_512982.1| - 0.11 12.0 1.0 10 5.7 0.2 2.6 2 0 0 2 2 2 0 Bacillus competence pheromone ComX PNMA PF14893.1 gi|89255621|ref|YP_512982.1| - 0.11 11.4 0.0 6.6 5.6 0.0 2.2 1 1 1 2 2 2 0 PNMA Cyto_ox_2 PF02322.10 gi|89255622|ref|YP_512983.1| - 1.1e-104 350.2 33.6 1.3e-104 349.9 23.3 1.0 1 0 0 1 1 1 1 Cytochrome oxidase subunit II CcmH PF03918.9 gi|89255622|ref|YP_512983.1| - 0.16 10.9 0.4 1.8 7.5 0.0 2.5 2 0 0 2 2 2 0 Cytochrome C biogenesis protein DUF4293 PF14126.1 gi|89255622|ref|YP_512983.1| - 0.24 11.3 12.4 0.039 13.8 1.0 3.2 2 1 1 3 3 3 0 Domain of unknown function (DUF4293) Bac_Ubq_Cox PF01654.12 gi|89255623|ref|YP_512984.1| - 1.9e-183 609.8 16.9 2.3e-183 609.5 11.7 1.0 1 0 0 1 1 1 1 Bacterial Cytochrome Ubiquinol Oxidase MFS_1 PF07690.11 gi|89255624|ref|YP_512985.1| - 8.3e-46 156.3 69.7 2.5e-39 135.0 30.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|89255624|ref|YP_512985.1| - 1.4e-07 30.3 38.9 2.8e-06 25.9 15.7 2.1 1 1 1 2 2 2 2 MFS/sugar transport protein Sugar_tr PF00083.19 gi|89255624|ref|YP_512985.1| - 1.8e-07 30.0 47.9 0.00024 19.8 33.2 2.3 1 1 0 1 1 1 1 Sugar (and other) transporter MFS_3 PF05977.8 gi|89255624|ref|YP_512985.1| - 0.0022 16.2 0.5 0.0022 16.2 0.4 2.6 2 1 0 2 2 2 1 Transmembrane secretion effector DUF3333 PF11812.3 gi|89255624|ref|YP_512985.1| - 0.15 12.0 0.5 0.43 10.5 0.3 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF3333) COX_ARM PF06481.9 gi|89255625|ref|YP_512986.1| - 2.9e-15 55.6 0.5 5.6e-15 54.7 0.4 1.5 1 0 0 1 1 1 1 COX Aromatic Rich Motif COX2 PF00116.15 gi|89255625|ref|YP_512986.1| - 2.2e-07 30.7 0.8 9.5e-07 28.6 0.1 2.2 2 1 0 2 2 2 1 Cytochrome C oxidase subunit II, periplasmic domain COX2_TM PF02790.10 gi|89255625|ref|YP_512986.1| - 0.027 14.4 3.5 0.063 13.2 2.4 1.6 1 0 0 1 1 1 0 Cytochrome C oxidase subunit II, transmembrane domain DUF4328 PF14219.1 gi|89255625|ref|YP_512986.1| - 0.036 13.3 2.4 0.057 12.7 1.7 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4328) DUF3112 PF11309.3 gi|89255625|ref|YP_512986.1| - 0.038 13.7 0.4 0.078 12.7 0.3 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3112) Tetraspannin PF00335.15 gi|89255625|ref|YP_512986.1| - 0.17 11.0 6.3 0.84 8.8 4.5 1.9 1 1 0 1 1 1 0 Tetraspanin family Tic20 PF09685.5 gi|89255625|ref|YP_512986.1| - 2.5 8.1 10.5 0.093 12.7 1.7 2.1 1 1 1 2 2 2 0 Tic20-like protein COX1 PF00115.15 gi|89255626|ref|YP_512987.1| - 8.1e-155 515.8 75.2 8.1e-155 515.8 52.1 2.2 3 0 0 3 3 3 1 Cytochrome C and Quinol oxidase polypeptide I COX3 PF00510.13 gi|89255627|ref|YP_512988.1| - 2e-17 63.4 28.3 4.7e-17 62.2 19.6 1.5 1 1 0 1 1 1 1 Cytochrome c oxidase subunit III COX4_pro PF03626.9 gi|89255628|ref|YP_512989.1| - 1.2e-12 47.7 19.3 1.5e-12 47.4 13.4 1.1 1 0 0 1 1 1 1 Prokaryotic Cytochrome C oxidase subunit IV Dpy19 PF10034.4 gi|89255628|ref|YP_512989.1| - 0.0092 14.2 3.2 0.01 14.0 2.2 1.0 1 0 0 1 1 1 1 Q-cell neuroblast polarisation YoqO PF14037.1 gi|89255628|ref|YP_512989.1| - 0.084 12.9 7.3 2.5 8.2 0.0 2.1 1 1 1 2 2 2 0 YoqO-like protein 5TM-5TMR_LYT PF07694.7 gi|89255628|ref|YP_512989.1| - 0.33 10.2 10.7 0.4 9.9 7.4 1.1 1 0 0 1 1 1 0 5TMR of 5TMR-LYT OST3_OST6 PF04756.8 gi|89255628|ref|YP_512989.1| - 0.54 9.7 9.4 0.6 9.6 6.1 1.5 1 1 0 1 1 1 0 OST3 / OST6 family DUF3816 PF12822.2 gi|89255628|ref|YP_512989.1| - 0.69 9.7 11.8 0.8 9.5 8.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3816) DUF2628 PF10947.3 gi|89255628|ref|YP_512989.1| - 1.3 8.8 10.9 0.14 12.0 2.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2628) YfhO PF09586.5 gi|89255628|ref|YP_512989.1| - 1.5 6.7 8.0 1.9 6.4 5.5 1.0 1 0 0 1 1 1 0 Bacterial membrane protein YfhO DUF308 PF03729.8 gi|89255628|ref|YP_512989.1| - 1.6 8.7 14.7 2.2 8.3 10.2 1.3 1 0 0 1 1 1 0 Short repeat of unknown function (DUF308) VIT1 PF01988.14 gi|89255628|ref|YP_512989.1| - 1.7 8.0 7.6 1.8 7.9 5.2 1.1 1 0 0 1 1 1 0 VIT family DUF3087 PF11286.3 gi|89255628|ref|YP_512989.1| - 3.9 6.6 7.3 6.4 5.9 5.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3087) DUF2976 PF11190.3 gi|89255628|ref|YP_512989.1| - 8.6 5.9 14.3 9.7 5.7 5.1 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2976) UbiA PF01040.13 gi|89255629|ref|YP_512990.1| - 9.8e-35 120.0 25.9 1.2e-34 119.7 17.9 1.0 1 0 0 1 1 1 1 UbiA prenyltransferase family Hexapep PF00132.19 gi|89255630|ref|YP_512991.1| - 3.7e-31 105.2 46.9 4.3e-09 35.4 2.3 6.5 3 2 2 6 6 6 6 Bacterial transferase hexapeptide (six repeats) LpxD PF04613.9 gi|89255630|ref|YP_512991.1| - 6.5e-13 48.0 0.4 1.1e-12 47.3 0.3 1.4 1 0 0 1 1 1 1 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD Hexapep_2 PF14602.1 gi|89255630|ref|YP_512991.1| - 2.9e-10 39.5 39.1 1.3e-07 31.0 2.4 6.0 5 1 1 6 6 6 3 Hexapeptide repeat of succinyl-transferase DUF3940 PF13076.1 gi|89255631|ref|YP_512992.1| - 0.021 14.3 0.0 0.07 12.6 0.0 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF3940) Chordopox_A30L PF06015.7 gi|89255631|ref|YP_512992.1| - 0.68 9.5 5.6 2.9 7.5 0.1 2.8 3 0 0 3 3 3 0 Chordopoxvirus A30L protein Phos_pyr_kin PF08543.7 gi|89255632|ref|YP_512993.1| - 9.2e-18 64.3 0.0 1e-17 64.1 0.0 1.1 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase PfkB PF00294.19 gi|89255632|ref|YP_512993.1| - 8.4e-14 51.3 0.0 2.7e-12 46.4 0.0 2.1 2 0 0 2 2 2 1 pfkB family carbohydrate kinase Carb_kinase PF01256.12 gi|89255632|ref|YP_512993.1| - 0.048 12.9 0.0 0.098 11.9 0.0 1.4 1 0 0 1 1 1 0 Carbohydrate kinase Seadorna_VP6 PF07407.6 gi|89255632|ref|YP_512993.1| - 0.071 11.8 0.6 0.25 10.0 0.1 1.8 2 0 0 2 2 2 0 Seadornavirus VP6 protein DUF3568 PF12092.3 gi|89255633|ref|YP_512994.1| - 3.3e-45 152.9 6.8 3.7e-45 152.8 4.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3568) zf-SNAP50_C PF12251.3 gi|89255633|ref|YP_512994.1| - 0.12 11.7 0.2 0.14 11.5 0.2 1.2 1 0 0 1 1 1 0 snRNA-activating protein of 50kDa MW C terminal AAA_3 PF07726.6 gi|89255634|ref|YP_512995.1| - 5.4e-64 213.6 0.0 9.9e-64 212.8 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|89255634|ref|YP_512995.1| - 2.1e-12 46.9 0.0 6.3e-12 45.3 0.0 1.8 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|89255634|ref|YP_512995.1| - 3.1e-08 32.7 0.0 1.1e-07 31.0 0.0 1.9 1 1 0 1 1 1 1 MCM2/3/5 family Mg_chelatase PF01078.16 gi|89255634|ref|YP_512995.1| - 0.00011 21.4 0.1 0.021 14.0 0.0 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|89255634|ref|YP_512995.1| - 0.00063 19.2 0.0 0.0015 18.0 0.0 1.7 1 1 0 1 1 1 1 Sigma-54 interaction domain RuvB_N PF05496.7 gi|89255634|ref|YP_512995.1| - 0.00078 18.5 0.1 0.0064 15.5 0.0 2.3 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus RasGEF PF00617.14 gi|89255634|ref|YP_512995.1| - 0.0097 15.6 0.2 0.061 13.0 0.0 2.1 3 0 0 3 3 3 1 RasGEF domain AAA PF00004.24 gi|89255634|ref|YP_512995.1| - 0.083 13.0 0.0 0.63 10.2 0.0 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Bin3 PF06859.7 gi|89255634|ref|YP_512995.1| - 0.084 12.8 0.0 0.18 11.7 0.0 1.5 1 0 0 1 1 1 0 Bicoid-interacting protein 3 (Bin3) FtsK_SpoIIIE PF01580.13 gi|89255634|ref|YP_512995.1| - 0.11 11.9 0.0 0.2 11.1 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family DUF58 PF01882.13 gi|89255635|ref|YP_512996.1| - 2.4e-21 75.6 0.0 6e-21 74.3 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function DUF58 CW_binding_2 PF04122.7 gi|89255635|ref|YP_512996.1| - 0.23 11.7 3.4 0.12 12.6 0.5 1.8 2 0 0 2 2 2 0 Putative cell wall binding repeat 2 DUF4381 PF14316.1 gi|89255636|ref|YP_512997.1| - 5.4e-40 136.8 3.3 6e-40 136.7 2.3 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4381) Leuk-A4-hydro_C PF09127.6 gi|89255636|ref|YP_512997.1| - 0.00099 18.7 0.5 0.0016 18.0 0.3 1.5 1 0 0 1 1 1 1 Leukotriene A4 hydrolase, C-terminal Selenoprotein_S PF06936.6 gi|89255636|ref|YP_512997.1| - 0.0065 16.0 1.0 0.0087 15.6 0.7 1.3 1 1 0 1 1 1 1 Selenoprotein S (SelS) RELT PF12606.3 gi|89255636|ref|YP_512997.1| - 0.0088 15.1 0.1 0.013 14.6 0.1 1.3 1 0 0 1 1 1 1 Tumour necrosis factor receptor superfamily member 19 PIG-P PF08510.7 gi|89255636|ref|YP_512997.1| - 0.012 15.1 0.1 0.013 15.1 0.1 1.2 1 0 0 1 1 1 0 PIG-P CopD PF05425.8 gi|89255636|ref|YP_512997.1| - 0.032 14.4 0.0 0.045 13.9 0.0 1.2 1 0 0 1 1 1 0 Copper resistance protein D VWA_2 PF13519.1 gi|89255637|ref|YP_512998.1| - 2.5e-39 135.1 0.5 3.1e-39 134.8 0.3 1.1 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.23 gi|89255637|ref|YP_512998.1| - 4.1e-28 98.2 0.2 5.8e-28 97.8 0.1 1.1 1 0 0 1 1 1 1 von Willebrand factor type A domain DUF1194 PF06707.6 gi|89255637|ref|YP_512998.1| - 0.00071 18.5 0.2 0.012 14.5 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF1194) BatA PF07584.6 gi|89255637|ref|YP_512998.1| - 0.0053 16.9 7.4 0.16 12.1 0.5 2.5 2 0 0 2 2 2 2 Aerotolerance regulator N-terminal VWA_3 PF13768.1 gi|89255637|ref|YP_512998.1| - 0.017 14.8 0.0 0.16 11.6 0.0 2.5 1 1 0 1 1 1 0 von Willebrand factor type A domain Ssl1 PF04056.9 gi|89255637|ref|YP_512998.1| - 0.09 12.3 0.0 0.15 11.6 0.0 1.4 1 1 0 1 1 1 0 Ssl1-like VWA_CoxE PF05762.9 gi|89255637|ref|YP_512998.1| - 0.24 10.5 1.2 1.5 7.8 0.0 2.3 2 1 0 2 2 2 0 VWA domain containing CoxE-like protein VWA_2 PF13519.1 gi|89255638|ref|YP_512999.1| - 9.2e-37 126.7 0.5 1.1e-36 126.5 0.4 1.1 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.23 gi|89255638|ref|YP_512999.1| - 2.2e-11 43.8 1.0 3.1e-11 43.3 0.7 1.1 1 0 0 1 1 1 1 von Willebrand factor type A domain BatA PF07584.6 gi|89255638|ref|YP_512999.1| - 0.0041 17.2 4.6 0.0088 16.2 3.2 1.6 1 0 0 1 1 1 1 Aerotolerance regulator N-terminal APS_kinase PF01583.15 gi|89255638|ref|YP_512999.1| - 0.011 15.3 0.0 0.025 14.2 0.0 1.5 1 1 0 1 1 1 0 Adenylylsulphate kinase VWA_CoxE PF05762.9 gi|89255638|ref|YP_512999.1| - 0.013 14.6 0.0 0.024 13.7 0.0 1.3 1 0 0 1 1 1 0 VWA domain containing CoxE-like protein MGS PF02142.17 gi|89255638|ref|YP_512999.1| - 0.016 15.1 2.9 0.55 10.1 0.0 3.0 3 0 0 3 3 3 0 MGS-like domain RC-P840_PscD PF10657.4 gi|89255638|ref|YP_512999.1| - 0.071 12.9 0.8 3.4 7.5 0.0 2.8 2 1 1 3 3 3 0 Photosystem P840 reaction centre protein PscD DUF4131 PF13567.1 gi|89255638|ref|YP_512999.1| - 2.9 7.2 6.6 0.26 10.6 0.4 2.2 3 0 0 3 3 3 0 Domain of unknown function (DUF4131) DUF3753 PF12575.3 gi|89255638|ref|YP_512999.1| - 3.1 7.6 6.0 24 4.8 0.0 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF3753) TPR_2 PF07719.12 gi|89255639|ref|YP_513000.1| - 1e-12 46.9 12.6 1.2e-07 31.0 0.0 3.8 2 2 2 4 4 4 3 Tetratricopeptide repeat TPR_1 PF00515.23 gi|89255639|ref|YP_513000.1| - 1.9e-12 46.1 11.9 3.8e-10 38.9 0.1 3.4 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_11 PF13414.1 gi|89255639|ref|YP_513000.1| - 2.5e-10 39.8 13.8 7.5e-08 31.9 0.8 3.3 3 0 0 3 3 3 3 TPR repeat TPR_6 PF13174.1 gi|89255639|ref|YP_513000.1| - 2.7e-09 36.8 8.4 0.00012 22.2 0.1 3.8 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_16 PF13432.1 gi|89255639|ref|YP_513000.1| - 3.9e-08 33.7 2.1 0.0001 22.8 0.5 3.1 2 1 1 3 3 3 2 Tetratricopeptide repeat Apc3 PF12895.2 gi|89255639|ref|YP_513000.1| - 5.3e-06 26.4 5.0 3.6e-05 23.7 2.9 2.6 1 1 0 1 1 1 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_8 PF13181.1 gi|89255639|ref|YP_513000.1| - 5.8e-06 25.7 19.3 1.8e-05 24.1 0.2 4.8 2 2 2 4 4 4 1 Tetratricopeptide repeat TPR_14 PF13428.1 gi|89255639|ref|YP_513000.1| - 5.9e-06 26.4 0.1 0.0016 18.9 0.0 3.2 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_7 PF13176.1 gi|89255639|ref|YP_513000.1| - 7.9e-06 25.2 3.7 0.00012 21.5 0.0 3.5 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_12 PF13424.1 gi|89255639|ref|YP_513000.1| - 0.00019 21.3 8.7 0.0024 17.7 2.7 3.5 1 1 2 3 3 3 1 Tetratricopeptide repeat TPR_19 PF14559.1 gi|89255639|ref|YP_513000.1| - 0.016 15.4 5.9 0.33 11.3 2.9 3.3 1 1 0 1 1 1 0 Tetratricopeptide repeat TPR_9 PF13371.1 gi|89255639|ref|YP_513000.1| - 0.061 13.1 0.0 0.52 10.2 0.0 2.3 2 0 0 2 2 2 0 Tetratricopeptide repeat Daxx PF03344.10 gi|89255639|ref|YP_513000.1| - 0.25 9.8 31.1 0.31 9.4 21.5 1.1 1 0 0 1 1 1 0 Daxx Family Ycf1 PF05758.7 gi|89255639|ref|YP_513000.1| - 0.44 8.1 18.8 0.48 8.0 13.0 1.2 1 0 0 1 1 1 0 Ycf1 TPR_3 PF07720.7 gi|89255639|ref|YP_513000.1| - 1.3 8.8 16.5 7.1 6.5 0.1 3.6 4 0 0 4 4 3 0 Tetratricopeptide repeat TPR_17 PF13431.1 gi|89255639|ref|YP_513000.1| - 1.8 8.9 10.5 30 5.1 0.2 4.6 4 0 0 4 4 4 0 Tetratricopeptide repeat SAPS PF04499.10 gi|89255639|ref|YP_513000.1| - 1.8 7.0 21.8 2.3 6.7 15.1 1.2 1 0 0 1 1 1 0 SIT4 phosphatase-associated protein Fis1_TPR_C PF14853.1 gi|89255639|ref|YP_513000.1| - 1.8 8.4 11.4 0.52 10.2 0.1 3.5 3 0 0 3 3 3 0 Fis1 C-terminal tetratricopeptide repeat SprA-related PF12118.3 gi|89255639|ref|YP_513000.1| - 4.6 6.4 34.2 7 5.8 23.7 1.3 1 0 0 1 1 1 0 SprA-related family DUF2146 PF10220.4 gi|89255639|ref|YP_513000.1| - 5.9 4.7 22.0 7.2 4.4 15.3 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2146) Sporozoite_P67 PF05642.6 gi|89255639|ref|YP_513000.1| - 8.7 4.0 18.1 14 3.3 12.5 1.3 1 0 0 1 1 1 0 Sporozoite P67 surface antigen BatD PF13584.1 gi|89255640|ref|YP_513001.1| - 1.4e-101 340.5 14.3 1.7e-101 340.2 9.9 1.0 1 0 0 1 1 1 1 Oxygen tolerance TRAPPC10 PF12584.3 gi|89255640|ref|YP_513001.1| - 2.9e-07 30.0 0.3 0.0015 18.0 0.0 3.4 2 1 0 3 3 3 3 Trafficking protein particle complex subunit 10, TRAPPC10 Peptidase_C15 PF01470.12 gi|89255641|ref|YP_513002.1| - 2.9e-81 272.1 1.8 3.4e-81 271.9 1.2 1.0 1 0 0 1 1 1 1 Pyroglutamyl peptidase YjbE PF11106.3 gi|89255641|ref|YP_513002.1| - 1.7 8.6 4.5 15 5.6 0.1 2.7 3 0 0 3 3 3 0 Exopolysaccharide production protein YjbE DNA_pol3_chi PF04364.8 gi|89255643|ref|YP_513004.1| - 7.2e-17 61.5 0.1 8.1e-17 61.3 0.0 1.0 1 0 0 1 1 1 1 DNA polymerase III chi subunit, HolC tRNA-synt_1 PF00133.17 gi|89255644|ref|YP_513005.1| - 9.5e-211 700.9 1.8 4.1e-210 698.8 0.2 2.5 2 1 0 2 2 2 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|89255644|ref|YP_513005.1| - 1.6e-37 128.6 0.9 3.1e-37 127.6 0.7 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA Val_tRNA-synt_C PF10458.4 gi|89255644|ref|YP_513005.1| - 3.5e-19 68.6 9.0 9.9e-19 67.1 6.2 1.9 1 0 0 1 1 1 1 Valyl tRNA synthetase tRNA binding arm tRNA-synt_1g PF09334.6 gi|89255644|ref|YP_513005.1| - 6.8e-17 61.2 0.7 6.5e-06 25.0 0.3 4.6 4 1 0 4 4 4 2 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.1 gi|89255644|ref|YP_513005.1| - 3.2e-12 46.1 0.0 3.8e-09 36.0 0.0 2.7 1 1 1 2 2 2 2 Leucyl-tRNA synthetase, Domain 2 End3 PF12761.2 gi|89255644|ref|YP_513005.1| - 0.0066 16.1 4.2 0.013 15.1 2.9 1.4 1 0 0 1 1 1 1 Actin cytoskeleton-regulatory complex protein END3 Cas_DxTHG PF09455.5 gi|89255644|ref|YP_513005.1| - 0.021 13.9 0.9 0.038 13.1 0.6 1.4 1 0 0 1 1 1 0 CRISPR-associated (Cas) DxTHG family AKNA PF12443.3 gi|89255644|ref|YP_513005.1| - 0.13 12.2 0.4 0.4 10.7 0.1 1.9 2 0 0 2 2 2 0 AT-hook-containing transcription factor ADIP PF11559.3 gi|89255644|ref|YP_513005.1| - 0.28 11.0 2.4 0.63 9.9 1.7 1.5 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding PDDEXK_1 PF12705.2 gi|89255646|ref|YP_513007.1| - 0.073 12.4 0.2 0.28 10.5 0.1 1.8 1 1 0 1 1 1 0 PD-(D/E)XK nuclease superfamily DUF4363 PF14276.1 gi|89255646|ref|YP_513007.1| - 0.61 9.7 7.3 0.19 11.4 0.5 3.1 4 0 0 4 4 4 0 Domain of unknown function (DUF4363) DoxX_3 PF13781.1 gi|89255647|ref|YP_513008.1| - 0.0065 16.8 2.5 0.0078 16.5 1.7 1.1 1 0 0 1 1 1 1 DoxX-like family FUSC_2 PF13515.1 gi|89255647|ref|YP_513008.1| - 2.7 7.9 10.9 14 5.5 7.4 1.9 1 1 0 1 1 1 0 Fusaric acid resistance protein-like FMN_dh PF01070.13 gi|89255648|ref|YP_513009.1| - 1.1e-122 409.2 0.0 1.4e-122 409.0 0.0 1.0 1 0 0 1 1 1 1 FMN-dependent dehydrogenase Glu_synthase PF01645.12 gi|89255648|ref|YP_513009.1| - 0.0049 15.8 0.4 0.011 14.6 0.3 1.6 1 1 0 1 1 1 1 Conserved region in glutamate synthase NMO PF03060.10 gi|89255648|ref|YP_513009.1| - 0.014 14.5 0.7 0.039 13.1 0.4 1.7 2 0 0 2 2 2 0 Nitronate monooxygenase IGPS PF00218.16 gi|89255648|ref|YP_513009.1| - 0.018 14.1 0.1 0.054 12.5 0.1 1.7 1 1 0 1 1 1 0 Indole-3-glycerol phosphate synthase Nitroreductase PF00881.19 gi|89255649|ref|YP_513010.1| - 5.5e-24 84.8 0.0 6.8e-24 84.5 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family NUDIX PF00293.23 gi|89255650|ref|YP_513011.1| - 3.2e-19 68.9 0.0 3.7e-19 68.7 0.0 1.0 1 0 0 1 1 1 1 NUDIX domain NUDIX_2 PF13869.1 gi|89255650|ref|YP_513011.1| - 0.00053 19.3 0.0 0.0012 18.1 0.0 1.5 1 1 1 2 2 2 1 Nucleotide hydrolase Flavi_DEAD PF07652.9 gi|89255650|ref|YP_513011.1| - 0.00054 19.7 0.0 0.00071 19.3 0.0 1.1 1 0 0 1 1 1 1 Flavivirus DEAD domain NUDIX_4 PF14815.1 gi|89255650|ref|YP_513011.1| - 0.019 14.4 0.0 0.025 14.0 0.0 1.2 1 0 0 1 1 1 0 NUDIX domain Lyase_1 PF00206.15 gi|89255651|ref|YP_513012.1| - 1.2e-105 353.1 0.3 1.8e-105 352.5 0.2 1.3 1 0 0 1 1 1 1 Lyase FumaraseC_C PF10415.4 gi|89255651|ref|YP_513012.1| - 3.5e-20 71.8 2.1 2e-19 69.3 0.1 2.6 2 0 0 2 2 2 1 Fumarase C C-terminus tRNA-synt_1c PF00749.16 gi|89255652|ref|YP_513013.1| - 1.2e-113 378.9 0.0 1.5e-113 378.6 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain QLQ PF08880.6 gi|89255652|ref|YP_513013.1| - 0.16 11.4 0.2 0.16 11.4 0.1 2.0 2 0 0 2 2 2 0 QLQ Dpoe2NT PF12213.3 gi|89255653|ref|YP_513014.1| - 0.037 13.9 0.0 0.075 12.9 0.0 1.5 1 0 0 1 1 1 0 DNA polymerases epsilon N terminal DDE_Tnp_1_2 PF13586.1 gi|89255654|ref|YP_513015.1| - 5.7e-16 58.4 0.1 1.6e-15 57.0 0.1 1.8 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|89255654|ref|YP_513015.1| - 3.1e-13 49.7 1.0 1.1e-12 48.0 0.7 1.7 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|89255654|ref|YP_513015.1| - 2.6e-09 37.0 0.1 3.7e-09 36.5 0.1 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF4096 PF13340.1 gi|89255654|ref|YP_513015.1| - 0.00068 19.4 0.0 0.0013 18.5 0.0 1.5 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) AA_permease_2 PF13520.1 gi|89255655|ref|YP_513016.1| - 1.8e-37 128.8 46.5 6.6e-37 127.0 32.3 1.7 1 1 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|89255655|ref|YP_513016.1| - 2.2e-18 65.8 35.7 2.2e-18 65.8 24.7 1.8 1 1 0 1 1 1 1 Amino acid permease COPI_assoc PF08507.5 gi|89255655|ref|YP_513016.1| - 0.0017 18.0 9.6 0.0017 18.0 6.7 3.3 2 1 0 2 2 2 1 COPI associated protein Pico_P2B PF01552.12 gi|89255655|ref|YP_513016.1| - 0.067 13.3 0.0 0.15 12.2 0.0 1.6 1 0 0 1 1 1 0 Picornavirus 2B protein PsbL PF02419.12 gi|89255655|ref|YP_513016.1| - 1.5 8.3 8.4 2.5 7.5 0.3 3.8 2 0 0 2 2 2 0 PsbL protein Amidinotransf PF02274.12 gi|89255656|ref|YP_513017.1| - 3.8e-66 223.0 0.1 4.3e-66 222.8 0.1 1.0 1 0 0 1 1 1 1 Amidinotransferase DHFR_1 PF00186.14 gi|89255657|ref|YP_513018.1| - 3.4e-60 202.2 0.6 3.9e-60 202.0 0.4 1.0 1 0 0 1 1 1 1 Dihydrofolate reductase Plasmid_Txe PF06769.8 gi|89255657|ref|YP_513018.1| - 0.023 14.5 0.1 0.1 12.4 0.1 2.1 1 1 1 2 2 2 0 Plasmid encoded toxin Txe Ribosomal_S2 PF00318.15 gi|89255658|ref|YP_513019.1| - 5.2e-84 280.6 0.1 5.9e-84 280.5 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S2 Oxidored_nitro PF00148.14 gi|89255658|ref|YP_513019.1| - 0.00036 19.2 0.0 0.00046 18.9 0.0 1.1 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Ldh_2 PF02615.9 gi|89255658|ref|YP_513019.1| - 0.019 13.7 0.4 0.027 13.2 0.3 1.3 1 0 0 1 1 1 0 Malate/L-lactate dehydrogenase SpoVIF PF14069.1 gi|89255658|ref|YP_513019.1| - 0.038 13.7 0.5 0.1 12.3 0.4 1.7 1 0 0 1 1 1 0 Stage VI sporulation protein F PTCB-BRCT PF12738.2 gi|89255658|ref|YP_513019.1| - 0.055 13.3 0.2 4.7 7.1 0.0 2.6 2 0 0 2 2 2 0 twin BRCT domain Peripla_BP_1 PF00532.16 gi|89255658|ref|YP_513019.1| - 0.061 12.5 0.0 0.17 11.0 0.0 1.8 2 0 0 2 2 2 0 Periplasmic binding proteins and sugar binding domain of LacI family FdsD PF11390.3 gi|89255658|ref|YP_513019.1| - 0.11 12.5 0.1 0.35 10.9 0.0 1.9 1 0 0 1 1 1 0 NADH-dependant formate dehydrogenase delta subunit FdsD ADH_zinc_N PF00107.21 gi|89255658|ref|YP_513019.1| - 1.8 8.0 4.2 5.3 6.6 0.5 3.0 2 1 2 4 4 4 0 Zinc-binding dehydrogenase EF_TS PF00889.14 gi|89255659|ref|YP_513020.1| - 1.8e-74 249.8 10.7 2.8e-74 249.1 7.4 1.3 1 0 0 1 1 1 1 Elongation factor TS UBA PF00627.26 gi|89255659|ref|YP_513020.1| - 6.5e-10 38.5 0.8 2.1e-09 36.9 0.4 2.0 2 0 0 2 2 2 1 UBA/TS-N domain AA_kinase PF00696.23 gi|89255660|ref|YP_513021.1| - 1.7e-29 103.0 0.5 2e-29 102.8 0.3 1.1 1 0 0 1 1 1 1 Amino acid kinase family RRF PF01765.14 gi|89255661|ref|YP_513022.1| - 3.1e-63 212.1 2.6 4.6e-63 211.5 1.8 1.2 1 0 0 1 1 1 1 Ribosome recycling factor Metal_resist PF13801.1 gi|89255661|ref|YP_513022.1| - 0.079 12.9 0.7 0.16 11.9 0.5 1.5 1 1 0 1 1 1 0 Heavy-metal resistance Prefoldin PF02996.12 gi|89255661|ref|YP_513022.1| - 0.8 9.3 7.4 2 8.0 0.1 2.3 2 0 0 2 2 2 0 Prefoldin subunit DUF883 PF05957.8 gi|89255661|ref|YP_513022.1| - 2.2 8.7 5.2 2 8.8 2.1 1.9 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF883) Prenyltransf PF01255.14 gi|89255662|ref|YP_513023.1| - 3.7e-76 255.1 0.0 4.2e-76 254.9 0.0 1.0 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase CTP_transf_1 PF01148.15 gi|89255663|ref|YP_513024.1| - 1.6e-54 185.3 27.5 1.8e-54 185.1 19.0 1.0 1 0 0 1 1 1 1 Cytidylyltransferase family dUTPase PF00692.14 gi|89255664|ref|YP_513025.1| - 4.6e-32 110.1 0.0 5.7e-32 109.8 0.0 1.0 1 0 0 1 1 1 1 dUTPase CDP-OH_P_transf PF01066.16 gi|89255665|ref|YP_513026.1| - 2.8e-16 59.6 15.6 3.4e-15 56.1 10.8 2.2 1 1 0 1 1 1 1 CDP-alcohol phosphatidyltransferase Ribosom_S12_S23 PF00164.20 gi|89255666|ref|YP_513027.1| - 5.2e-55 184.1 2.5 5.7e-55 183.9 1.7 1.0 1 0 0 1 1 1 1 Ribosomal protein S12/S23 Ribosomal_S7 PF00177.16 gi|89255667|ref|YP_513028.1| - 5.3e-63 211.0 5.0 5.9e-63 210.8 3.5 1.0 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e GTP_EFTU PF00009.22 gi|89255668|ref|YP_513029.1| - 2e-63 213.2 0.0 5.4e-63 211.8 0.0 1.7 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.13 gi|89255668|ref|YP_513029.1| - 1.2e-42 144.2 0.2 2.7e-42 143.0 0.2 1.6 1 0 0 1 1 1 1 Elongation factor G, domain IV EFG_II PF14492.1 gi|89255668|ref|YP_513029.1| - 3.8e-36 122.7 0.0 8e-36 121.7 0.0 1.6 1 0 0 1 1 1 1 Elongation Factor G, domain II EFG_C PF00679.19 gi|89255668|ref|YP_513029.1| - 4.3e-33 113.0 0.0 1e-31 108.6 0.0 2.8 2 0 0 2 2 2 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.20 gi|89255668|ref|YP_513029.1| - 2.6e-17 62.6 0.4 8.3e-17 61.0 0.3 2.0 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|89255668|ref|YP_513029.1| - 0.0026 17.7 0.0 0.015 15.2 0.0 2.1 2 0 0 2 2 2 1 50S ribosome-binding GTPase Ribosomal_S10 PF00338.17 gi|89255669|ref|YP_513030.1| - 4.1e-38 129.1 0.5 4.5e-38 128.9 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e Ribosomal_L3 PF00297.17 gi|89255670|ref|YP_513031.1| - 5.9e-42 143.8 11.3 1.6e-40 139.1 7.9 2.0 1 1 0 1 1 1 1 Ribosomal protein L3 Ribosomal_L4 PF00573.17 gi|89255671|ref|YP_513032.1| - 6.3e-64 214.9 0.4 7e-64 214.7 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L23 PF00276.15 gi|89255672|ref|YP_513033.1| - 2.8e-25 88.0 0.7 3e-25 87.9 0.5 1.0 1 0 0 1 1 1 1 Ribosomal protein L23 PaREP1 PF05942.6 gi|89255672|ref|YP_513033.1| - 0.017 14.9 0.5 0.024 14.4 0.3 1.2 1 0 0 1 1 1 0 Archaeal PaREP1/PaREP8 family YgbB PF02542.11 gi|89255672|ref|YP_513033.1| - 0.024 14.4 0.1 0.025 14.4 0.1 1.1 1 0 0 1 1 1 0 YgbB family GPW_gp25 PF04965.9 gi|89255672|ref|YP_513033.1| - 0.035 13.6 0.0 0.04 13.4 0.0 1.1 1 0 0 1 1 1 0 Gene 25-like lysozyme DUF2114 PF09887.4 gi|89255672|ref|YP_513033.1| - 0.086 11.1 0.1 0.099 10.9 0.0 1.0 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2114) WHEP-TRS PF00458.15 gi|89255672|ref|YP_513033.1| - 0.2 11.3 0.9 0.49 10.1 0.1 1.9 2 0 0 2 2 2 0 WHEP-TRS domain Ribosomal_L2_C PF03947.13 gi|89255673|ref|YP_513034.1| - 5.8e-60 200.7 1.4 1.1e-59 199.8 0.9 1.5 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.18 gi|89255673|ref|YP_513034.1| - 1.8e-33 114.2 2.8 2.8e-33 113.7 1.2 1.9 2 0 0 2 2 2 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_S19 PF00203.16 gi|89255674|ref|YP_513035.1| - 3.9e-37 125.7 0.4 4.5e-37 125.5 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein S19 Ribosomal_L22 PF00237.14 gi|89255675|ref|YP_513036.1| - 7.1e-40 135.1 0.5 7.9e-40 135.0 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Ribosomal_S3_C PF00189.15 gi|89255676|ref|YP_513037.1| - 1.3e-34 118.2 0.8 8.9e-34 115.5 0.2 2.2 2 0 0 2 2 2 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.12 gi|89255676|ref|YP_513037.1| - 1.5e-21 75.7 4.0 3.3e-21 74.6 2.8 1.6 1 0 0 1 1 1 1 KH domain KH_4 PF13083.1 gi|89255676|ref|YP_513037.1| - 0.0039 16.7 0.2 0.012 15.2 0.0 1.9 1 1 1 2 2 2 1 KH domain KH_1 PF00013.24 gi|89255676|ref|YP_513037.1| - 0.051 13.2 0.5 0.17 11.5 0.2 2.0 2 0 0 2 2 2 0 KH domain HrpB4 PF09502.5 gi|89255676|ref|YP_513037.1| - 0.077 12.1 0.2 0.12 11.5 0.1 1.3 1 0 0 1 1 1 0 Bacterial type III secretion protein (HrpB4) PG_binding_4 PF12229.3 gi|89255676|ref|YP_513037.1| - 0.13 12.4 0.7 0.92 9.7 0.1 2.3 1 1 1 2 2 2 0 Putative peptidoglycan binding domain Ribosomal_L16 PF00252.13 gi|89255677|ref|YP_513038.1| - 3.9e-52 175.5 2.2 4.4e-52 175.3 1.5 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e Ribosomal_L29 PF00831.18 gi|89255678|ref|YP_513039.1| - 2.4e-21 75.1 2.6 2.7e-21 74.9 1.8 1.1 1 0 0 1 1 1 1 Ribosomal L29 protein PTB PF08416.8 gi|89255678|ref|YP_513039.1| - 0.038 13.8 0.1 0.041 13.7 0.0 1.0 1 0 0 1 1 1 0 Phosphotyrosine-binding domain PaaSYMP PF14738.1 gi|89255678|ref|YP_513039.1| - 0.077 12.7 0.7 0.078 12.6 0.5 1.1 1 0 0 1 1 1 0 Solute carrier (proton/amino acid symporter), TRAMD3 or PAT1 DUF2733 PF10813.3 gi|89255678|ref|YP_513039.1| - 0.15 11.6 0.0 0.23 11.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2733) Ribosomal_S17 PF00366.15 gi|89255679|ref|YP_513040.1| - 1.2e-26 92.4 3.4 1.4e-26 92.2 2.4 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 Ribosomal_L14 PF00238.14 gi|89255680|ref|YP_513041.1| - 1.7e-52 176.3 0.5 1.8e-52 176.1 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e Ribosomal_L6 PF00347.18 gi|89255680|ref|YP_513041.1| - 0.031 14.7 0.5 0.055 13.9 0.3 1.4 1 0 0 1 1 1 0 Ribosomal protein L6 YcfA PF07927.7 gi|89255680|ref|YP_513041.1| - 0.22 11.4 1.1 0.66 9.9 0.1 2.0 1 1 1 2 2 2 0 YcfA-like protein KOW PF00467.24 gi|89255681|ref|YP_513042.1| - 0.00025 20.6 4.1 0.00068 19.2 2.7 1.9 1 1 0 1 1 1 1 KOW motif Ribosomal_L5_C PF00673.16 gi|89255682|ref|YP_513043.1| - 3.1e-42 142.2 0.0 1.4e-41 140.1 0.0 1.9 2 1 0 2 2 2 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.14 gi|89255682|ref|YP_513043.1| - 1.7e-23 82.1 0.9 3.1e-23 81.2 0.6 1.5 1 0 0 1 1 1 1 Ribosomal protein L5 DUF2862 PF11061.3 gi|89255682|ref|YP_513043.1| - 0.097 12.4 0.1 1.8 8.3 0.0 2.5 2 1 1 3 3 3 0 Protein of unknown function (DUF2862) Ribosomal_S14 PF00253.16 gi|89255683|ref|YP_513044.1| - 7e-25 86.1 0.5 9.9e-25 85.6 0.4 1.2 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e Ribosomal_S8 PF00410.14 gi|89255684|ref|YP_513045.1| - 2.1e-44 150.4 0.0 2.3e-44 150.3 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_L6 PF00347.18 gi|89255685|ref|YP_513046.1| - 1e-35 122.0 1.2 6.9e-20 71.3 0.0 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 Antimicrobial15 PF08110.7 gi|89255685|ref|YP_513046.1| - 0.059 13.3 0.1 0.14 12.1 0.1 1.7 1 0 0 1 1 1 0 Ocellatin family Ribosomal_L18p PF00861.17 gi|89255686|ref|YP_513047.1| - 1.3e-32 112.5 2.0 1.4e-32 112.3 1.4 1.0 1 0 0 1 1 1 1 Ribosomal L18p/L5e family Ribosomal_S5_C PF03719.10 gi|89255687|ref|YP_513048.1| - 3.5e-30 103.0 1.5 5.9e-30 102.3 1.1 1.4 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_S5 PF00333.15 gi|89255687|ref|YP_513048.1| - 1.9e-26 91.5 3.5 3e-26 90.9 2.4 1.3 1 0 0 1 1 1 1 Ribosomal protein S5, N-terminal domain Ribosomal_L30 PF00327.15 gi|89255688|ref|YP_513049.1| - 3.5e-17 61.7 0.1 4e-17 61.5 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_L18e PF00828.14 gi|89255689|ref|YP_513050.1| - 8.3e-24 84.4 3.1 1e-23 84.0 2.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 SecY PF00344.15 gi|89255690|ref|YP_513051.1| - 2.4e-111 372.0 29.4 2.4e-111 372.0 20.4 1.3 2 0 0 2 2 2 1 SecY translocase Pox_A14 PF05767.7 gi|89255690|ref|YP_513051.1| - 0.066 13.1 0.2 0.066 13.1 0.1 3.4 3 0 0 3 3 3 0 Poxvirus virion envelope protein A14 Glycoprotein_G PF00802.14 gi|89255690|ref|YP_513051.1| - 0.085 11.9 0.4 0.16 11.1 0.3 1.4 1 0 0 1 1 1 0 Pneumovirus attachment glycoprotein G DUF3043 PF11241.3 gi|89255690|ref|YP_513051.1| - 9.9 5.7 6.7 3.2 7.3 0.2 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3043) Ribosomal_L36 PF00444.13 gi|89255691|ref|YP_513052.1| - 9.3e-20 70.3 14.0 1e-19 70.2 9.7 1.0 1 0 0 1 1 1 1 Ribosomal protein L36 Ribosomal_S13 PF00416.17 gi|89255692|ref|YP_513053.1| - 2.6e-37 127.4 1.0 3e-37 127.3 0.7 1.0 1 0 0 1 1 1 1 Ribosomal protein S13/S18 FbpA PF05833.6 gi|89255692|ref|YP_513053.1| - 0.0011 17.6 0.0 0.0013 17.4 0.0 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) HHH_6 PF14579.1 gi|89255692|ref|YP_513053.1| - 0.0019 18.1 0.2 0.088 12.8 0.2 2.1 1 1 0 1 1 1 1 Helix-hairpin-helix motif H2TH PF06831.9 gi|89255692|ref|YP_513053.1| - 0.0066 16.1 0.0 0.0093 15.6 0.0 1.3 1 0 0 1 1 1 1 Formamidopyrimidine-DNA glycosylase H2TH domain DNA_pol_lambd_f PF10391.4 gi|89255692|ref|YP_513053.1| - 0.15 11.5 0.2 0.49 9.9 0.0 1.9 3 0 0 3 3 3 0 Fingers domain of DNA polymerase lambda Ribosomal_S11 PF00411.14 gi|89255693|ref|YP_513054.1| - 5.4e-47 158.5 0.1 6.7e-47 158.2 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S11 KdpC PF02669.10 gi|89255693|ref|YP_513054.1| - 0.1 12.3 0.1 0.12 12.0 0.1 1.2 1 0 0 1 1 1 0 K+-transporting ATPase, c chain DUF2423 PF10338.4 gi|89255693|ref|YP_513054.1| - 0.6 10.1 4.1 1.4 8.9 2.8 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2423) Ribosomal_S4 PF00163.14 gi|89255694|ref|YP_513055.1| - 4.7e-26 91.0 2.1 6.9e-26 90.4 0.9 1.6 2 0 0 2 2 2 1 Ribosomal protein S4/S9 N-terminal domain S4 PF01479.20 gi|89255694|ref|YP_513055.1| - 1.5e-16 59.5 0.1 3.1e-16 58.5 0.0 1.6 1 0 0 1 1 1 1 S4 domain S4_2 PF13275.1 gi|89255694|ref|YP_513055.1| - 0.00029 20.3 0.3 0.00071 19.1 0.2 1.8 2 0 0 2 2 2 1 S4 domain RNA_pol_A_CTD PF03118.10 gi|89255695|ref|YP_513056.1| - 5.8e-26 89.7 1.0 5.8e-26 89.7 0.7 2.1 2 0 0 2 2 2 1 Bacterial RNA polymerase, alpha chain C terminal domain RNA_pol_A_bac PF01000.21 gi|89255695|ref|YP_513056.1| - 1.4e-15 57.4 0.4 4.2e-15 55.8 0.2 1.8 2 0 0 2 2 2 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.19 gi|89255695|ref|YP_513056.1| - 5.3e-13 47.8 0.0 9.7e-13 47.0 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain HHH_5 PF14520.1 gi|89255695|ref|YP_513056.1| - 0.0018 18.4 0.0 0.33 11.1 0.0 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix domain Aconitase_B_N PF11791.3 gi|89255695|ref|YP_513056.1| - 0.036 13.8 0.1 0.063 13.0 0.0 1.5 1 0 0 1 1 1 0 Aconitate B N-terminal domain BetaGal_dom3 PF13363.1 gi|89255695|ref|YP_513056.1| - 0.14 11.5 0.4 0.48 9.8 0.1 2.1 2 0 0 2 2 2 0 Beta-galactosidase, domain 3 Ribosomal_L17 PF01196.14 gi|89255696|ref|YP_513057.1| - 4e-35 120.2 0.2 4.9e-35 119.9 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L17 DDE_3 PF13358.1 gi|89255697|ref|YP_513058.1| - 1.2e-30 106.2 0.0 2.1e-30 105.3 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.11 gi|89255697|ref|YP_513058.1| - 1.4e-07 31.2 0.2 9.4e-07 28.5 0.1 2.1 2 0 0 2 2 2 1 Transposase DDE_1 PF03184.14 gi|89255697|ref|YP_513058.1| - 8.1e-07 28.3 0.1 1.3e-06 27.7 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_28 PF13518.1 gi|89255697|ref|YP_513058.1| - 0.00051 19.9 0.0 0.0017 18.3 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain rve PF00665.21 gi|89255697|ref|YP_513058.1| - 0.00067 19.7 0.0 0.0012 18.9 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.1 gi|89255697|ref|YP_513058.1| - 0.0075 15.8 0.0 0.027 14.1 0.0 2.0 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.1 gi|89255697|ref|YP_513058.1| - 0.018 15.1 0.0 0.028 14.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix DDE_Tnp_ISAZ013 PF07592.6 gi|89255697|ref|YP_513058.1| - 0.046 12.4 0.5 0.43 9.2 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain Gly_transf_sug PF04488.10 gi|89255698|ref|YP_513059.1| - 1.3e-08 35.1 0.6 1.3e-08 35.1 0.4 3.0 2 2 0 3 3 3 1 Glycosyltransferase sugar-binding region containing DXD motif TcdA_TcdB PF12919.2 gi|89255698|ref|YP_513059.1| - 7.1e-08 31.3 1.5 7.1e-08 31.3 1.1 2.4 1 1 1 2 2 2 2 TcdA/TcdB catalytic glycosyltransferase domain DDE_3 PF13358.1 gi|89255699|ref|YP_513060.1| - 1.7e-31 108.9 0.0 2.8e-31 108.2 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.11 gi|89255699|ref|YP_513060.1| - 1.5e-07 31.0 0.2 1.1e-06 28.3 0.1 2.1 2 0 0 2 2 2 1 Transposase DDE_1 PF03184.14 gi|89255699|ref|YP_513060.1| - 5.8e-07 28.8 0.1 9.5e-07 28.1 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_28 PF13518.1 gi|89255699|ref|YP_513060.1| - 0.00058 19.8 0.0 0.0018 18.2 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain rve PF00665.21 gi|89255699|ref|YP_513060.1| - 0.00072 19.6 0.0 0.0013 18.7 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.1 gi|89255699|ref|YP_513060.1| - 0.0087 15.6 0.0 0.029 14.0 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.1 gi|89255699|ref|YP_513060.1| - 0.02 15.0 0.0 0.032 14.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix DDE_Tnp_ISAZ013 PF07592.6 gi|89255699|ref|YP_513060.1| - 0.039 12.6 0.6 0.32 9.7 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain HSP90 PF00183.13 gi|89255700|ref|YP_513061.1| - 1.3e-120 403.3 22.1 4.9e-119 398.1 14.7 2.2 1 1 1 2 2 2 2 Hsp90 protein HATPase_c_3 PF13589.1 gi|89255700|ref|YP_513061.1| - 8.6e-17 61.0 2.2 2.8e-16 59.4 1.5 1.9 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.21 gi|89255700|ref|YP_513061.1| - 6.2e-12 45.2 1.1 2.2e-11 43.4 0.5 2.1 2 1 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HD PF01966.17 gi|89255700|ref|YP_513061.1| - 0.39 10.7 2.9 19 5.2 0.3 3.1 3 0 0 3 3 3 0 HD domain DDE_3 PF13358.1 gi|89255701|ref|YP_513062.1| - 1.7e-31 108.9 0.0 2.8e-31 108.2 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.11 gi|89255701|ref|YP_513062.1| - 1.5e-07 31.0 0.2 1.1e-06 28.3 0.1 2.1 2 0 0 2 2 2 1 Transposase DDE_1 PF03184.14 gi|89255701|ref|YP_513062.1| - 5.8e-07 28.8 0.1 9.5e-07 28.1 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_28 PF13518.1 gi|89255701|ref|YP_513062.1| - 0.00058 19.8 0.0 0.0018 18.2 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain rve PF00665.21 gi|89255701|ref|YP_513062.1| - 0.00072 19.6 0.0 0.0013 18.7 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.1 gi|89255701|ref|YP_513062.1| - 0.0087 15.6 0.0 0.029 14.0 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.1 gi|89255701|ref|YP_513062.1| - 0.02 15.0 0.0 0.032 14.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix DDE_Tnp_ISAZ013 PF07592.6 gi|89255701|ref|YP_513062.1| - 0.039 12.6 0.6 0.32 9.7 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain ELFV_dehydrog PF00208.16 gi|89255702|ref|YP_513063.1| - 1.5e-83 280.1 2.4 1.9e-83 279.7 1.7 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.13 gi|89255702|ref|YP_513063.1| - 1.4e-45 154.0 0.0 3.5e-45 152.7 0.0 1.7 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AdoHcyase_NAD PF00670.16 gi|89255702|ref|YP_513063.1| - 0.02 14.7 0.5 0.038 13.8 0.3 1.4 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Oxidored_nitro PF00148.14 gi|89255702|ref|YP_513063.1| - 0.046 12.3 0.0 0.077 11.6 0.0 1.3 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase 2-Hacid_dh_C PF02826.14 gi|89255702|ref|YP_513063.1| - 0.062 12.4 0.0 0.12 11.5 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|89255702|ref|YP_513063.1| - 0.13 12.5 0.1 0.36 11.1 0.1 1.8 1 1 0 1 1 1 0 Putative NAD(P)-binding Bac_thur_toxin PF01338.13 gi|89255702|ref|YP_513063.1| - 0.17 11.0 0.0 0.27 10.4 0.0 1.2 1 0 0 1 1 1 0 Bacillus thuringiensis toxin DDE_Tnp_1_2 PF13586.1 gi|89255703|ref|YP_513064.1| - 5e-16 58.6 0.2 1.5e-15 57.1 0.1 1.8 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|89255703|ref|YP_513064.1| - 2.9e-13 49.8 1.0 1e-12 48.1 0.7 1.7 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|89255703|ref|YP_513064.1| - 2.4e-09 37.1 0.1 3.4e-09 36.6 0.1 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF4096 PF13340.1 gi|89255703|ref|YP_513064.1| - 0.00064 19.5 0.0 0.0013 18.5 0.0 1.5 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) YkuD PF03734.9 gi|89255704|ref|YP_513065.1| - 9e-05 22.7 0.0 0.00016 21.9 0.0 1.4 1 1 0 1 1 1 1 L,D-transpeptidase catalytic domain Orn_Arg_deC_N PF02784.11 gi|89255705|ref|YP_513066.1| - 3.1e-45 154.3 0.0 4.4e-45 153.8 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.17 gi|89255705|ref|YP_513066.1| - 9e-22 76.9 0.0 1.9e-21 75.9 0.0 1.6 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AA_permease_2 PF13520.1 gi|89255706|ref|YP_513067.1| - 4.7e-53 180.2 61.8 5.9e-53 179.9 42.8 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|89255706|ref|YP_513067.1| - 5.6e-25 87.6 58.5 7.2e-25 87.2 40.6 1.0 1 0 0 1 1 1 1 Amino acid permease FAM70 PF14967.1 gi|89255706|ref|YP_513067.1| - 5.3 6.1 10.3 0.28 10.3 1.1 2.8 3 0 0 3 3 3 0 FAM70 protein DNA_binding_1 PF01035.15 gi|89255707|ref|YP_513068.1| - 7.1e-27 92.9 0.0 1e-26 92.4 0.0 1.2 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain MSA-2c PF12238.3 gi|89255707|ref|YP_513068.1| - 0.019 14.6 0.7 0.029 14.0 0.5 1.2 1 0 0 1 1 1 0 Merozoite surface antigen 2c Put_Phosphatase PF06888.7 gi|89255707|ref|YP_513068.1| - 0.051 12.7 0.1 0.063 12.4 0.1 1.2 1 0 0 1 1 1 0 Putative Phosphatase DUF749 PF05370.6 gi|89255707|ref|YP_513068.1| - 0.094 12.6 0.4 0.24 11.3 0.1 1.7 1 1 0 2 2 2 0 Domain of unknown function (DUF749) SNARE_assoc PF09335.6 gi|89255708|ref|YP_513069.1| - 1.3e-25 89.9 11.4 1.3e-25 89.9 7.9 2.1 2 0 0 2 2 2 1 SNARE associated Golgi protein DUF3353 PF11833.3 gi|89255708|ref|YP_513069.1| - 5.4 6.4 10.5 0.83 9.0 2.5 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3353) Pyr_redox_2 PF07992.9 gi|89255709|ref|YP_513070.1| - 7.3e-39 133.7 0.0 1.2e-38 132.9 0.0 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|89255709|ref|YP_513070.1| - 1.2e-21 76.9 6.1 6.8e-19 68.0 0.0 2.8 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|89255709|ref|YP_513070.1| - 9.9e-21 73.8 0.2 4.4e-20 71.7 0.0 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GIDA PF01134.17 gi|89255709|ref|YP_513070.1| - 7.3e-12 44.8 8.1 1e-08 34.4 2.0 3.5 4 0 0 4 4 4 2 Glucose inhibited division protein A Pyr_redox_3 PF13738.1 gi|89255709|ref|YP_513070.1| - 2.1e-10 41.0 0.1 1.6e-09 38.0 0.1 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|89255709|ref|YP_513070.1| - 4.7e-08 32.3 7.5 0.0022 16.9 0.9 4.1 4 0 0 4 4 4 2 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|89255709|ref|YP_513070.1| - 1e-06 27.4 9.7 0.076 11.4 1.7 4.5 4 1 0 4 4 4 3 HI0933-like protein FAD_oxidored PF12831.2 gi|89255709|ref|YP_513070.1| - 3.6e-06 26.3 2.4 0.00022 20.4 1.5 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|89255709|ref|YP_513070.1| - 1.1e-05 25.3 5.1 0.064 13.2 0.1 2.7 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|89255709|ref|YP_513070.1| - 0.0019 17.1 13.2 0.034 12.9 0.1 3.0 3 0 0 3 3 3 2 FAD binding domain NAD_binding_7 PF13241.1 gi|89255709|ref|YP_513070.1| - 0.0053 16.9 3.6 0.71 10.1 0.0 3.1 3 1 0 3 3 3 1 Putative NAD(P)-binding AlaDh_PNT_C PF01262.16 gi|89255709|ref|YP_513070.1| - 0.0076 15.8 0.2 4.9 6.6 0.1 2.6 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain XdhC_C PF13478.1 gi|89255709|ref|YP_513070.1| - 0.008 16.4 0.0 1 9.6 0.0 2.4 2 0 0 2 2 2 1 XdhC Rossmann domain Thi4 PF01946.12 gi|89255709|ref|YP_513070.1| - 0.013 14.6 12.2 0.38 9.8 3.4 3.4 2 1 1 3 3 3 0 Thi4 family 2-Hacid_dh_C PF02826.14 gi|89255709|ref|YP_513070.1| - 0.016 14.4 0.6 2.8 7.0 0.0 2.4 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Lycopene_cycl PF05834.7 gi|89255709|ref|YP_513070.1| - 0.023 13.6 4.4 0.9 8.3 0.4 2.4 2 1 0 2 2 2 0 Lycopene cyclase protein 3HCDH_N PF02737.13 gi|89255709|ref|YP_513070.1| - 0.024 14.2 6.6 0.18 11.4 0.0 2.6 2 1 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K_oxygenase PF13434.1 gi|89255709|ref|YP_513070.1| - 0.041 12.7 1.6 0.046 12.6 0.0 1.8 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) UDPG_MGDP_dh_N PF03721.9 gi|89255709|ref|YP_513070.1| - 0.19 11.0 3.4 7 5.9 0.6 2.6 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TrkA_N PF02254.13 gi|89255709|ref|YP_513070.1| - 0.35 10.8 7.6 8.6 6.3 0.0 3.8 2 1 1 3 3 3 0 TrkA-N domain FAD_binding_3 PF01494.14 gi|89255709|ref|YP_513070.1| - 0.58 9.1 7.8 1.9 7.4 0.1 2.6 3 0 0 3 3 3 0 FAD binding domain CDP-OH_P_transf PF01066.16 gi|89255710|ref|YP_513071.1| - 3.2e-17 62.6 17.4 7.3e-17 61.5 6.0 2.3 2 0 0 2 2 2 2 CDP-alcohol phosphatidyltransferase DUF202 PF02656.10 gi|89255710|ref|YP_513071.1| - 0.14 12.3 4.7 1.5 9.1 3.2 2.6 1 1 0 1 1 1 0 Domain of unknown function (DUF202) DUF3566 PF12089.3 gi|89255710|ref|YP_513071.1| - 0.7 9.9 10.9 1.5 8.8 4.1 2.3 1 1 1 2 2 2 0 Transmembrane domain of unknown function (DUF3566) ABC2_membrane_4 PF12730.2 gi|89255711|ref|YP_513072.1| - 0.0056 15.8 10.1 0.0062 15.7 7.0 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein Scs3p PF10261.4 gi|89255711|ref|YP_513072.1| - 0.12 11.3 1.3 0.15 11.0 0.9 1.1 1 0 0 1 1 1 0 Inositol phospholipid synthesis and fat-storage-inducing TM DUF4229 PF14012.1 gi|89255711|ref|YP_513072.1| - 0.61 10.0 6.3 9 6.2 3.5 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF4229) MtrF PF09472.5 gi|89255711|ref|YP_513072.1| - 7.8 5.8 8.1 0.25 10.6 0.4 2.2 3 0 0 3 3 3 0 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) AA_permease PF00324.16 gi|89255712|ref|YP_513073.1| - 4.1e-14 51.7 22.6 4.6e-14 51.6 15.6 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.1 gi|89255712|ref|YP_513073.1| - 5.7e-14 51.4 24.8 6.3e-14 51.3 17.2 1.0 1 0 0 1 1 1 1 Amino acid permease DUF4006 PF13179.1 gi|89255712|ref|YP_513073.1| - 7.3e-05 22.2 1.9 0.0078 15.7 0.0 2.9 2 0 0 2 2 2 1 Family of unknown function (DUF4006) CTDII PF01556.13 gi|89255713|ref|YP_513074.1| - 4.7e-27 93.6 1.2 1.6e-17 63.1 0.0 3.1 3 0 0 3 3 3 2 DnaJ C terminal domain DnaJ PF00226.26 gi|89255713|ref|YP_513074.1| - 1.3e-26 92.1 4.4 2.3e-26 91.2 3.0 1.5 1 0 0 1 1 1 1 DnaJ domain EamA PF00892.15 gi|89255714|ref|YP_513075.1| - 5.8e-22 78.0 36.9 3.5e-12 46.4 11.0 2.7 2 1 1 3 3 3 2 EamA-like transporter family EmrE PF13536.1 gi|89255714|ref|YP_513075.1| - 0.00012 22.2 32.3 0.0093 16.1 2.7 4.0 1 1 2 3 3 3 3 Multidrug resistance efflux transporter UPF0546 PF10639.4 gi|89255714|ref|YP_513075.1| - 0.0065 16.2 7.8 0.61 9.9 0.1 3.2 2 1 0 2 2 2 2 Uncharacterised protein family UPF0546 Lactamase_B_3 PF13483.1 gi|89255714|ref|YP_513075.1| - 0.019 14.6 0.0 0.032 13.9 0.0 1.3 1 0 0 1 1 1 0 Beta-lactamase superfamily domain FtsL PF04999.8 gi|89255714|ref|YP_513075.1| - 0.5 10.1 0.0 0.5 10.1 0.0 3.1 4 0 0 4 4 4 0 Cell division protein FtsL Trp_Tyr_perm PF03222.8 gi|89255715|ref|YP_513076.1| - 8.5e-77 258.5 39.1 1e-76 258.3 27.1 1.0 1 0 0 1 1 1 1 Tryptophan/tyrosine permease family Aa_trans PF01490.13 gi|89255715|ref|YP_513076.1| - 7.9e-07 27.9 23.2 7.9e-07 27.9 16.1 2.4 1 1 1 2 2 2 1 Transmembrane amino acid transporter protein PI3Ka PF00613.15 gi|89255716|ref|YP_513077.1| - 0.00037 19.7 1.3 0.00055 19.1 0.9 1.4 1 1 0 1 1 1 1 Phosphoinositide 3-kinase family, accessory domain (PIK domain) DUF2433 PF10360.4 gi|89255716|ref|YP_513077.1| - 0.072 13.4 0.8 0.51 10.6 0.2 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2433) YxiJ PF14176.1 gi|89255716|ref|YP_513077.1| - 0.17 12.0 0.3 0.17 12.0 0.2 2.1 2 1 1 3 3 3 0 YxiJ-like protein RelA_SpoT PF04607.12 gi|89255717|ref|YP_513078.1| - 1.1e-35 122.1 0.7 2.9e-35 120.7 0.5 1.8 1 0 0 1 1 1 1 Region found in RelA / SpoT proteins HD_4 PF13328.1 gi|89255717|ref|YP_513078.1| - 4e-33 114.2 0.0 9.1e-33 113.1 0.0 1.6 1 0 0 1 1 1 1 HD domain TGS PF02824.16 gi|89255717|ref|YP_513078.1| - 1.9e-19 69.2 0.0 3.9e-19 68.2 0.0 1.6 1 0 0 1 1 1 1 TGS domain ThiS PF02597.15 gi|89255717|ref|YP_513078.1| - 0.00015 22.1 0.0 0.00067 20.0 0.0 2.1 1 0 0 1 1 1 1 ThiS family DUF4124 PF13511.1 gi|89255718|ref|YP_513079.1| - 3.4e-09 36.6 0.0 8.6e-09 35.3 0.0 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF4124) BiPBP_C PF06832.7 gi|89255718|ref|YP_513079.1| - 0.00058 19.7 0.0 0.0014 18.5 0.0 1.7 2 0 0 2 2 2 1 Penicillin-Binding Protein C-terminus Family DUF4124 PF13511.1 gi|89255719|ref|YP_513080.1| - 2.5e-08 33.8 0.5 6.2e-08 32.5 0.4 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF4124) DcpS PF05652.7 gi|89255719|ref|YP_513080.1| - 0.0096 16.2 3.1 0.014 15.7 1.8 1.5 1 1 0 1 1 1 1 Scavenger mRNA decapping enzyme (DcpS) N-terminal DPPIV_N PF00930.16 gi|89255719|ref|YP_513080.1| - 0.036 12.6 0.4 0.05 12.1 0.3 1.3 1 0 0 1 1 1 0 Dipeptidyl peptidase IV (DPP IV) N-terminal region AA_permease_C PF13906.1 gi|89255720|ref|YP_513081.1| - 0.0057 16.4 3.4 0.0057 16.4 2.3 4.6 4 1 0 4 4 4 1 C-terminus of AA_permease DUF4064 PF13273.1 gi|89255720|ref|YP_513081.1| - 0.011 15.7 4.0 0.011 15.7 2.8 3.3 2 1 1 3 3 3 0 Protein of unknown function (DUF4064) NMN_transporter PF04973.7 gi|89255720|ref|YP_513081.1| - 6.2 6.2 30.9 8.6 5.7 21.4 1.3 1 0 0 1 1 1 0 Nicotinamide mononucleotide transporter SAM_MT PF04445.8 gi|89255721|ref|YP_513082.1| - 2.6e-41 141.3 0.0 3e-41 141.1 0.0 1.0 1 0 0 1 1 1 1 Putative SAM-dependent methyltransferase Methyltransf_26 PF13659.1 gi|89255721|ref|YP_513082.1| - 4.2e-06 26.7 0.0 5.5e-06 26.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|89255721|ref|YP_513082.1| - 0.0012 17.9 0.0 0.002 17.1 0.0 1.4 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_31 PF13847.1 gi|89255721|ref|YP_513082.1| - 0.0055 16.3 0.0 0.01 15.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|89255721|ref|YP_513082.1| - 0.0088 15.4 0.0 0.017 14.5 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Phage_integrase PF00589.17 gi|89255722|ref|YP_513083.1| - 1.1e-38 132.6 0.1 1.9e-38 131.8 0.1 1.4 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.12 gi|89255722|ref|YP_513083.1| - 2.1e-17 63.0 1.8 5.1e-16 58.5 0.2 2.4 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.1 gi|89255722|ref|YP_513083.1| - 1.8e-08 34.6 2.0 4.7e-08 33.2 0.3 2.1 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_2 PF12834.2 gi|89255722|ref|YP_513083.1| - 0.004 17.5 2.0 0.056 13.8 0.1 2.5 2 1 0 2 2 2 1 Phage integrase, N-terminal DUF2063 PF09836.4 gi|89255722|ref|YP_513083.1| - 0.012 15.6 0.1 0.033 14.1 0.0 1.7 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2063) Trp_Tyr_perm PF03222.8 gi|89255723|ref|YP_513084.1| - 1.9e-79 267.3 43.2 2.3e-79 267.0 29.9 1.0 1 0 0 1 1 1 1 Tryptophan/tyrosine permease family Aa_trans PF01490.13 gi|89255723|ref|YP_513084.1| - 5.3e-16 58.1 27.4 5.3e-16 58.1 19.0 2.7 2 2 0 2 2 2 1 Transmembrane amino acid transporter protein AA_permease PF00324.16 gi|89255723|ref|YP_513084.1| - 5e-06 25.1 39.4 5e-06 25.1 27.3 2.4 2 1 0 2 2 2 1 Amino acid permease AA_permease_2 PF13520.1 gi|89255723|ref|YP_513084.1| - 0.00022 19.9 57.0 0.001 17.6 39.5 1.9 1 1 0 1 1 1 1 Amino acid permease SecB PF02556.9 gi|89255724|ref|YP_513085.1| - 6.7e-48 162.0 0.8 7.6e-48 161.8 0.6 1.0 1 0 0 1 1 1 1 Preprotein translocase subunit SecB DUF4340 PF14238.1 gi|89255724|ref|YP_513085.1| - 0.02 14.6 0.1 0.027 14.1 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4340) MutS_V PF00488.16 gi|89255725|ref|YP_513086.1| - 1.3e-91 306.1 0.2 2.6e-91 305.2 0.1 1.5 1 0 0 1 1 1 1 MutS domain V MutS_I PF01624.15 gi|89255725|ref|YP_513086.1| - 3.6e-43 146.1 0.1 1.6e-42 144.0 0.0 2.2 2 0 0 2 2 2 1 MutS domain I MutS_III PF05192.13 gi|89255725|ref|YP_513086.1| - 2.5e-42 144.9 2.0 7.4e-42 143.4 1.4 1.8 1 0 0 1 1 1 1 MutS domain III MutS_IV PF05190.13 gi|89255725|ref|YP_513086.1| - 7.6e-26 90.1 4.4 7.6e-26 90.1 3.1 2.5 2 0 0 2 2 2 1 MutS family domain IV MutS_II PF05188.12 gi|89255725|ref|YP_513086.1| - 9.4e-07 28.9 0.2 9.4e-07 28.9 0.1 2.4 3 0 0 3 3 3 1 MutS domain II DUF2358 PF10184.4 gi|89255725|ref|YP_513086.1| - 0.021 14.7 0.1 0.074 12.9 0.1 2.0 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2358) ACCA PF03255.9 gi|89255726|ref|YP_513087.1| - 1.3e-56 190.2 0.7 1.9e-56 189.6 0.1 1.6 2 0 0 2 2 2 1 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit Carboxyl_trans PF01039.17 gi|89255726|ref|YP_513087.1| - 2.3e-18 65.8 0.0 3e-18 65.4 0.0 1.1 1 0 0 1 1 1 1 Carboxyl transferase domain MdcE PF06833.6 gi|89255726|ref|YP_513087.1| - 0.0057 15.8 0.0 0.0072 15.5 0.0 1.2 1 0 0 1 1 1 1 Malonate decarboxylase gamma subunit (MdcE) Nup54 PF13874.1 gi|89255726|ref|YP_513087.1| - 0.39 10.3 2.6 0.46 10.1 0.0 2.4 3 0 0 3 3 3 0 Nucleoporin complex subunit 54 N_methyl_2 PF13544.1 gi|89255727|ref|YP_513088.1| - 0.02 14.3 0.9 0.038 13.4 0.7 1.5 1 0 0 1 1 1 0 Type IV pilin N-term methylation site GFxxxE N_methyl_2 PF13544.1 gi|89255728|ref|YP_513089.1| - 1.3e-07 30.7 0.2 1.3e-07 30.7 0.1 1.9 2 0 0 2 2 2 1 Type IV pilin N-term methylation site GFxxxE N_methyl PF07963.7 gi|89255728|ref|YP_513089.1| - 2.2e-05 23.9 1.5 5e-05 22.8 1.0 1.7 1 0 0 1 1 1 1 Prokaryotic N-terminal methylation motif N_methyl_3 PF13633.1 gi|89255728|ref|YP_513089.1| - 0.0012 18.4 5.4 0.0024 17.6 3.8 1.5 1 0 0 1 1 1 1 Prokaryotic N-terminal methylation site T2SJ PF11612.3 gi|89255728|ref|YP_513089.1| - 0.0052 16.5 0.0 0.0077 15.9 0.0 1.3 1 0 0 1 1 1 1 Type II secretion system (T2SS), protein J RP-C_C PF11800.3 gi|89255729|ref|YP_513090.1| - 0.26 10.9 3.4 0.53 9.9 2.3 1.4 1 0 0 1 1 1 0 Replication protein C C-terminal region TraG-D_C PF12696.2 gi|89255729|ref|YP_513090.1| - 3.8 7.3 7.8 0.26 11.1 1.2 2.1 2 0 0 2 2 2 0 TraM recognition site of TraD and TraG SIS_2 PF13580.1 gi|89255730|ref|YP_513091.1| - 1.6e-11 44.0 0.5 4.1e-11 42.7 0.4 1.7 1 1 0 1 1 1 1 SIS domain SIS PF01380.17 gi|89255730|ref|YP_513091.1| - 1.2e-09 37.8 3.7 6.3e-09 35.5 0.1 2.6 3 0 0 3 3 3 1 SIS domain Zeta_toxin PF06414.7 gi|89255732|ref|YP_513093.1| - 1.1e-24 86.6 0.0 1.4e-24 86.3 0.0 1.1 1 0 0 1 1 1 1 Zeta toxin AAA_17 PF13207.1 gi|89255732|ref|YP_513093.1| - 8.6e-05 23.3 0.0 0.00016 22.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|89255732|ref|YP_513093.1| - 0.00011 22.2 0.0 0.00012 22.0 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|89255732|ref|YP_513093.1| - 0.0005 19.3 0.0 0.00052 19.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 ABC_tran PF00005.22 gi|89255732|ref|YP_513093.1| - 0.00078 19.7 0.0 0.00099 19.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA PF00004.24 gi|89255732|ref|YP_513093.1| - 0.0014 18.8 0.0 0.0019 18.3 0.0 1.2 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.1 gi|89255732|ref|YP_513093.1| - 0.0029 17.4 0.0 0.0037 17.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain DUF815 PF05673.8 gi|89255732|ref|YP_513093.1| - 0.0036 16.2 0.0 0.0038 16.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF815) Torsin PF06309.6 gi|89255732|ref|YP_513093.1| - 0.0037 17.1 0.0 0.0044 16.8 0.0 1.2 1 0 0 1 1 1 1 Torsin AAA_18 PF13238.1 gi|89255732|ref|YP_513093.1| - 0.0038 17.5 0.0 0.0072 16.6 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|89255732|ref|YP_513093.1| - 0.0043 16.9 0.0 0.0065 16.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_PrkA PF08298.6 gi|89255732|ref|YP_513093.1| - 0.0062 15.2 0.0 0.0073 15.0 0.0 1.1 1 0 0 1 1 1 1 PrkA AAA domain AAA_29 PF13555.1 gi|89255732|ref|YP_513093.1| - 0.0069 15.8 0.1 0.011 15.2 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain Sigma54_activat PF00158.21 gi|89255732|ref|YP_513093.1| - 0.0081 15.6 0.0 0.011 15.1 0.0 1.2 1 0 0 1 1 1 1 Sigma-54 interaction domain Sigma54_activ_2 PF14532.1 gi|89255732|ref|YP_513093.1| - 0.0082 16.1 0.0 0.012 15.6 0.0 1.3 1 0 0 1 1 1 1 Sigma-54 interaction domain Gtr1_RagA PF04670.7 gi|89255732|ref|YP_513093.1| - 0.015 14.4 0.0 0.03 13.4 0.0 1.4 1 0 0 1 1 1 0 Gtr1/RagA G protein conserved region RuvB_N PF05496.7 gi|89255732|ref|YP_513093.1| - 0.021 13.8 0.0 0.031 13.3 0.0 1.3 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus CPT PF07931.7 gi|89255732|ref|YP_513093.1| - 0.027 14.0 0.0 0.036 13.7 0.0 1.2 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein AAA_5 PF07728.9 gi|89255732|ref|YP_513093.1| - 0.028 14.1 0.0 0.043 13.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) KAP_NTPase PF07693.9 gi|89255732|ref|YP_513093.1| - 0.029 13.3 0.0 0.033 13.1 0.0 1.1 1 0 0 1 1 1 0 KAP family P-loop domain UPF0079 PF02367.12 gi|89255732|ref|YP_513093.1| - 0.033 13.8 0.0 0.044 13.4 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 SMC_N PF02463.14 gi|89255732|ref|YP_513093.1| - 0.033 13.4 0.2 0.041 13.0 0.2 1.1 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_30 PF13604.1 gi|89255732|ref|YP_513093.1| - 0.043 13.3 0.0 0.059 12.9 0.0 1.1 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|89255732|ref|YP_513093.1| - 0.052 13.4 0.0 0.07 13.0 0.0 1.3 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_22 PF13401.1 gi|89255732|ref|YP_513093.1| - 0.054 13.6 0.0 0.08 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|89255732|ref|YP_513093.1| - 0.11 11.2 0.0 0.13 11.0 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_10 PF12846.2 gi|89255732|ref|YP_513093.1| - 0.12 11.8 0.0 0.15 11.5 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain APS_kinase PF01583.15 gi|89255732|ref|YP_513093.1| - 0.13 11.8 0.0 0.2 11.2 0.0 1.2 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_19 PF13245.1 gi|89255732|ref|YP_513093.1| - 0.13 11.9 0.0 0.21 11.3 0.0 1.3 1 0 0 1 1 1 0 Part of AAA domain DDE_Tnp_1_2 PF13586.1 gi|89255733|ref|YP_513094.1| - 2.2e-16 59.7 0.4 5.7e-16 58.4 0.1 1.8 3 0 0 3 3 3 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|89255733|ref|YP_513094.1| - 2e-13 50.3 1.1 7.2e-13 48.5 0.7 1.7 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|89255733|ref|YP_513094.1| - 1.9e-09 37.4 0.1 2.5e-09 37.0 0.1 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF4096 PF13340.1 gi|89255733|ref|YP_513094.1| - 0.00055 19.7 0.0 0.0011 18.8 0.0 1.5 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) Zeta_toxin PF06414.7 gi|89255734|ref|YP_513095.1| - 1.9e-26 92.4 0.2 2.5e-26 92.0 0.1 1.1 1 0 0 1 1 1 1 Zeta toxin DUF722 PF05263.6 gi|89255734|ref|YP_513095.1| - 0.064 13.3 0.4 0.12 12.5 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF722) DUF4550 PF15084.1 gi|89255734|ref|YP_513095.1| - 0.071 13.2 0.3 0.61 10.2 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4550) Na_H_Exchanger PF00999.16 gi|89255735|ref|YP_513096.1| - 8.7e-53 179.2 37.1 1.1e-52 178.8 25.7 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family tRNA-synt_1b PF00579.20 gi|89255737|ref|YP_513098.1| - 1.8e-61 207.8 0.4 2.4e-61 207.4 0.2 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_1f PF01921.13 gi|89255737|ref|YP_513098.1| - 0.00013 20.7 0.0 0.057 12.0 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (K) Endonuc_subdom PF09062.5 gi|89255737|ref|YP_513098.1| - 0.088 13.5 1.2 0.15 12.8 0.1 1.9 2 0 0 2 2 2 0 PI-PfuI Endonuclease subdomain DUF4562 PF15123.1 gi|89255737|ref|YP_513098.1| - 0.13 12.1 0.2 0.82 9.5 0.0 2.3 3 0 0 3 3 3 0 Domain of unknown function (DUF4562) CoaE PF01121.15 gi|89255738|ref|YP_513099.1| - 9.1e-46 155.5 0.7 1.1e-45 155.2 0.5 1.0 1 0 0 1 1 1 1 Dephospho-CoA kinase AAA_18 PF13238.1 gi|89255738|ref|YP_513099.1| - 2.8e-12 47.0 5.5 6.7e-12 45.8 3.8 1.6 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|89255738|ref|YP_513099.1| - 1.8e-09 38.4 2.2 4.9e-09 37.0 1.2 1.9 1 1 0 1 1 1 1 AAA domain Cytidylate_kin2 PF13189.1 gi|89255738|ref|YP_513099.1| - 2.9e-08 33.8 4.0 4.4e-08 33.2 2.8 1.3 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_33 PF13671.1 gi|89255738|ref|YP_513099.1| - 3.3e-05 23.7 0.4 0.00062 19.6 0.2 2.5 1 1 1 2 2 2 1 AAA domain SKI PF01202.17 gi|89255738|ref|YP_513099.1| - 0.00017 21.4 3.7 0.17 11.7 0.6 2.3 1 1 0 2 2 2 2 Shikimate kinase PRK PF00485.13 gi|89255738|ref|YP_513099.1| - 0.00092 18.8 0.6 0.0013 18.3 0.4 1.2 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family AAA_28 PF13521.1 gi|89255738|ref|YP_513099.1| - 0.0041 17.0 0.0 0.007 16.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain DUF4441 PF14536.1 gi|89255738|ref|YP_513099.1| - 0.008 16.1 0.6 0.008 16.1 0.4 1.6 2 0 0 2 2 2 1 Domain of unknown function (DUF4441) ADK PF00406.17 gi|89255738|ref|YP_513099.1| - 0.017 14.9 1.3 0.057 13.2 0.1 2.0 2 0 0 2 2 2 0 Adenylate kinase His_biosynth PF00977.16 gi|89255738|ref|YP_513099.1| - 0.06 12.6 0.1 0.093 11.9 0.1 1.4 1 0 0 1 1 1 0 Histidine biosynthesis protein DUF619 PF04768.8 gi|89255738|ref|YP_513099.1| - 0.09 12.1 0.5 0.15 11.4 0.2 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF619) DUF3333 PF11812.3 gi|89255738|ref|YP_513099.1| - 0.16 11.9 1.9 0.78 9.7 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF3333) AAA_22 PF13401.1 gi|89255738|ref|YP_513099.1| - 0.32 11.1 1.5 0.45 10.6 0.1 1.9 1 1 1 2 2 2 0 AAA domain COMPASS-Shg1 PF05205.7 gi|89255738|ref|YP_513099.1| - 0.66 10.2 9.0 0.5 10.6 0.6 2.5 2 1 0 2 2 2 0 COMPASS (Complex proteins associated with Set1p) component shg1 TFIIE_alpha PF02002.12 gi|89255738|ref|YP_513099.1| - 3.4 7.2 8.5 0.52 9.8 0.3 2.9 3 1 0 3 3 3 0 TFIIE alpha subunit Methyltransf_28 PF02636.12 gi|89255739|ref|YP_513100.1| - 2.8e-52 177.6 0.0 3.8e-52 177.1 0.0 1.2 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase TRM13 PF05206.9 gi|89255739|ref|YP_513100.1| - 0.079 12.1 0.0 0.28 10.4 0.0 1.8 2 0 0 2 2 2 0 Methyltransferase TRM13 Transketolase_N PF00456.16 gi|89255740|ref|YP_513101.1| - 3.8e-20 71.9 0.0 3.8e-15 55.5 0.0 2.2 2 0 0 2 2 2 2 Transketolase, thiamine diphosphate binding domain Transketolase_C PF02780.15 gi|89255740|ref|YP_513101.1| - 0.0023 17.8 0.0 0.0083 16.0 0.0 1.9 1 0 0 1 1 1 1 Transketolase, C-terminal domain 2-oxoacid_dh PF00198.18 gi|89255741|ref|YP_513102.1| - 5.9e-79 264.5 0.0 9.6e-79 263.8 0.0 1.3 1 0 0 1 1 1 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Biotin_lipoyl PF00364.17 gi|89255741|ref|YP_513102.1| - 1.5e-38 130.2 19.7 3.1e-19 68.3 3.3 2.5 2 0 0 2 2 2 2 Biotin-requiring enzyme E3_binding PF02817.12 gi|89255741|ref|YP_513102.1| - 2.9e-15 55.6 0.1 9.5e-15 53.9 0.0 1.9 1 0 0 1 1 1 1 e3 binding domain Biotin_lipoyl_2 PF13533.1 gi|89255741|ref|YP_513102.1| - 2e-09 36.9 17.1 1.8e-05 24.3 0.1 4.1 2 2 2 4 4 4 2 Biotin-lipoyl like GCV_H PF01597.14 gi|89255741|ref|YP_513102.1| - 7.1e-09 35.3 10.3 6.7e-06 25.7 1.6 2.7 2 0 0 2 2 2 2 Glycine cleavage H-protein HlyD PF00529.15 gi|89255741|ref|YP_513102.1| - 7.4e-07 28.7 17.0 0.045 13.0 0.2 4.4 2 2 2 4 4 4 4 HlyD family secretion protein NQRA PF05896.6 gi|89255741|ref|YP_513102.1| - 0.00015 21.0 5.6 0.017 14.3 1.0 2.3 1 1 0 2 2 2 2 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) RnfC_N PF13375.1 gi|89255741|ref|YP_513102.1| - 0.00016 21.3 8.4 0.47 10.2 0.2 4.0 2 2 2 4 4 4 3 RnfC Barrel sandwich hybrid domain PYNP_C PF07831.8 gi|89255741|ref|YP_513102.1| - 0.00018 20.8 4.3 1.6 8.2 0.0 4.4 4 0 0 4 4 4 1 Pyrimidine nucleoside phosphorylase C-terminal domain HlyD_3 PF13437.1 gi|89255741|ref|YP_513102.1| - 0.012 15.9 8.6 0.36 11.1 0.1 3.5 3 1 1 4 4 4 0 HlyD family secretion protein DUF2118 PF09891.4 gi|89255741|ref|YP_513102.1| - 0.052 13.2 1.8 0.97 9.1 0.2 2.9 2 1 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2118) Peptidase_M23 PF01551.17 gi|89255741|ref|YP_513102.1| - 0.063 13.3 2.6 3.5 7.7 0.0 3.3 2 1 0 3 3 3 0 Peptidase family M23 DUF3597 PF12200.3 gi|89255741|ref|YP_513102.1| - 3.5 8.0 8.8 16 5.9 1.4 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF3597) Pyr_redox_2 PF07992.9 gi|89255742|ref|YP_513103.1| - 6.3e-43 146.9 0.0 1.2e-42 146.0 0.0 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|89255742|ref|YP_513103.1| - 2.1e-33 114.6 0.3 3e-32 110.9 0.0 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.22 gi|89255742|ref|YP_513103.1| - 1.7e-17 63.6 5.5 9.1e-15 54.8 0.3 2.8 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|89255742|ref|YP_513103.1| - 1.4e-08 35.0 0.9 1.4e-05 25.2 0.2 2.8 1 1 2 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|89255742|ref|YP_513103.1| - 2e-08 33.5 5.2 3.9e-07 29.2 0.4 3.0 2 1 0 2 2 2 1 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|89255742|ref|YP_513103.1| - 2.1e-08 33.7 1.2 4.4e-08 32.6 0.8 1.5 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|89255742|ref|YP_513103.1| - 2.1e-06 27.6 9.0 0.00039 20.3 0.3 3.0 3 0 0 3 3 3 2 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|89255742|ref|YP_513103.1| - 2.4e-06 26.6 4.0 0.00011 21.2 0.7 3.0 3 0 0 3 3 3 1 FAD binding domain DAO PF01266.19 gi|89255742|ref|YP_513103.1| - 3.2e-05 22.9 8.8 0.025 13.5 1.1 3.1 4 0 0 4 4 4 2 FAD dependent oxidoreductase Thi4 PF01946.12 gi|89255742|ref|YP_513103.1| - 4.8e-05 22.5 2.4 0.0018 17.4 0.2 2.4 2 0 0 2 2 2 1 Thi4 family 3HCDH_N PF02737.13 gi|89255742|ref|YP_513103.1| - 0.00018 21.2 5.3 0.011 15.4 0.3 2.9 3 0 0 3 3 3 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HI0933_like PF03486.9 gi|89255742|ref|YP_513103.1| - 0.0016 16.9 4.5 0.0085 14.6 0.2 2.6 3 0 0 3 3 3 1 HI0933-like protein AlaDh_PNT_C PF01262.16 gi|89255742|ref|YP_513103.1| - 0.003 17.1 1.1 0.59 9.6 0.0 2.5 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_3 PF01494.14 gi|89255742|ref|YP_513103.1| - 0.0032 16.5 11.3 0.014 14.4 0.2 2.8 3 1 0 3 3 3 2 FAD binding domain XdhC_C PF13478.1 gi|89255742|ref|YP_513103.1| - 0.0046 17.2 0.2 0.063 13.5 0.0 2.3 2 0 0 2 2 2 1 XdhC Rossmann domain 2-Hacid_dh_C PF02826.14 gi|89255742|ref|YP_513103.1| - 0.0079 15.3 1.0 0.83 8.7 0.0 2.5 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|89255742|ref|YP_513103.1| - 0.0088 16.2 0.8 0.061 13.5 0.0 2.3 2 0 0 2 2 2 1 Putative NAD(P)-binding Lycopene_cycl PF05834.7 gi|89255742|ref|YP_513103.1| - 0.011 14.7 0.8 3 6.6 0.2 2.5 2 0 0 2 2 2 0 Lycopene cyclase protein Methyltransf_18 PF12847.2 gi|89255742|ref|YP_513103.1| - 0.032 14.8 0.0 4.1 8.0 0.0 2.5 2 1 0 2 2 2 0 Methyltransferase domain CPSase_L_chain PF00289.17 gi|89255742|ref|YP_513103.1| - 0.054 13.5 0.4 11 6.2 0.0 2.8 3 0 0 3 3 2 0 Carbamoyl-phosphate synthase L chain, N-terminal domain Trp_halogenase PF04820.9 gi|89255742|ref|YP_513103.1| - 0.11 11.1 1.2 6.6 5.2 0.1 2.3 2 0 0 2 2 2 0 Tryptophan halogenase TrkA_N PF02254.13 gi|89255742|ref|YP_513103.1| - 0.12 12.3 2.9 0.15 12.0 0.1 2.5 3 0 0 3 3 2 0 TrkA-N domain DUF956 PF06115.6 gi|89255743|ref|YP_513104.1| - 0.022 14.3 0.0 0.022 14.3 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF956) DDE_Tnp_IS1595 PF12762.2 gi|89255743|ref|YP_513104.1| - 0.056 13.2 0.1 0.089 12.6 0.1 1.3 1 0 0 1 1 1 0 ISXO2-like transposase domain DUF4635 PF15466.1 gi|89255743|ref|YP_513104.1| - 0.097 11.9 0.1 0.1 11.8 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4635) DDE_3 PF13358.1 gi|89257203|ref|YP_513106.1| - 5.7e-31 107.2 0.0 9.3e-31 106.5 0.0 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.11 gi|89257203|ref|YP_513106.1| - 3.5e-07 29.9 0.1 2.5e-06 27.1 0.0 2.2 2 0 0 2 2 2 1 Transposase DDE_1 PF03184.14 gi|89257203|ref|YP_513106.1| - 5.6e-07 28.9 0.1 9.7e-07 28.1 0.0 1.4 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_28 PF13518.1 gi|89257203|ref|YP_513106.1| - 0.00061 19.7 0.0 0.0019 18.1 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain rve PF00665.21 gi|89257203|ref|YP_513106.1| - 0.00079 19.5 0.0 0.0014 18.7 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.1 gi|89257203|ref|YP_513106.1| - 0.0096 15.5 0.0 0.03 13.9 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.1 gi|89257203|ref|YP_513106.1| - 0.021 14.9 0.0 0.033 14.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix DDE_Tnp_ISAZ013 PF07592.6 gi|89257203|ref|YP_513106.1| - 0.021 13.5 0.2 0.32 9.6 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain CENP-B_N PF04218.8 gi|89257203|ref|YP_513106.1| - 0.069 12.5 0.0 0.71 9.3 0.0 2.5 3 0 0 3 3 3 0 CENP-B N-terminal DNA-binding domain NUDIX PF00293.23 gi|89255745|ref|YP_513107.1| - 4.4e-17 61.9 0.0 6e-17 61.5 0.0 1.2 1 0 0 1 1 1 1 NUDIX domain Nudix_N PF12535.3 gi|89255745|ref|YP_513107.1| - 4.1e-15 54.9 0.0 8.6e-15 53.9 0.0 1.5 1 0 0 1 1 1 1 Hydrolase of X-linked nucleoside diphosphate N terminal ArsC PF03960.10 gi|89255746|ref|YP_513108.1| - 5.4e-20 71.5 0.0 6e-20 71.3 0.0 1.0 1 0 0 1 1 1 1 ArsC family DUF1687 PF07955.6 gi|89255746|ref|YP_513108.1| - 0.037 14.0 0.1 0.044 13.7 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1687) Glutaredoxin PF00462.19 gi|89255746|ref|YP_513108.1| - 0.1 12.6 0.0 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 Glutaredoxin SMN PF06003.7 gi|89255747|ref|YP_513109.1| - 0.0055 15.8 1.5 0.0064 15.6 1.1 1.1 1 0 0 1 1 1 1 Survival motor neuron protein (SMN) DUF2681 PF10883.3 gi|89255747|ref|YP_513109.1| - 0.016 15.4 0.7 0.016 15.4 0.5 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2681) Cytokin-bind PF09265.5 gi|89255747|ref|YP_513109.1| - 0.05 12.7 0.6 0.094 11.8 0.1 1.6 1 1 0 1 1 1 0 Cytokinin dehydrogenase 1, FAD and cytokinin binding Peptidase_S49_N PF08496.5 gi|89255747|ref|YP_513109.1| - 0.11 12.2 4.4 0.13 12.0 3.0 1.2 1 0 0 1 1 1 0 Peptidase family S49 N-terminal DUF3450 PF11932.3 gi|89255747|ref|YP_513109.1| - 0.18 11.0 13.9 0.19 10.9 9.6 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) FAM176 PF14851.1 gi|89255747|ref|YP_513109.1| - 0.24 11.0 3.2 0.34 10.5 2.2 1.3 1 0 0 1 1 1 0 FAM176 family TRAP_alpha PF03896.11 gi|89255747|ref|YP_513109.1| - 0.27 10.1 3.3 0.29 10.0 2.3 1.1 1 0 0 1 1 1 0 Translocon-associated protein (TRAP), alpha subunit Phostensin_N PF13916.1 gi|89255747|ref|YP_513109.1| - 0.45 10.5 2.4 0.3 11.0 0.5 1.5 2 0 0 2 2 2 0 PP1-regulatory protein, Phostensin N-terminal DUF342 PF03961.8 gi|89255747|ref|YP_513109.1| - 0.52 8.6 6.5 0.53 8.6 4.5 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF342) DUF3573 PF12097.3 gi|89255747|ref|YP_513109.1| - 0.55 8.7 7.1 0.61 8.6 5.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3573) SID-1_RNA_chan PF13965.1 gi|89255747|ref|YP_513109.1| - 0.61 8.1 4.1 0.67 8.0 2.9 1.0 1 0 0 1 1 1 0 dsRNA-gated channel SID-1 DUF948 PF06103.6 gi|89255747|ref|YP_513109.1| - 0.78 9.6 5.4 0.92 9.4 0.8 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) Baculo_p24 PF05073.7 gi|89255747|ref|YP_513109.1| - 1.2 8.7 6.7 1.3 8.5 4.6 1.0 1 0 0 1 1 1 0 Baculovirus P24 capsid protein DUF3373 PF11853.3 gi|89255747|ref|YP_513109.1| - 1.4 7.3 8.1 1.9 6.9 5.6 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3373) IncA PF04156.9 gi|89255747|ref|YP_513109.1| - 1.9 8.0 9.9 2.4 7.7 6.9 1.2 1 0 0 1 1 1 0 IncA protein TMCO5 PF14992.1 gi|89255747|ref|YP_513109.1| - 3.6 6.6 12.2 4.5 6.3 8.5 1.1 1 0 0 1 1 1 0 TMCO5 family APG6 PF04111.7 gi|89255747|ref|YP_513109.1| - 3.8 6.4 14.8 4.4 6.2 10.3 1.0 1 0 0 1 1 1 0 Autophagy protein Apg6 YkyA PF10368.4 gi|89255748|ref|YP_513110.1| - 0.012 14.9 0.1 0.014 14.7 0.1 1.1 1 0 0 1 1 1 0 Putative cell-wall binding lipoprotein IMD PF08397.6 gi|89255748|ref|YP_513110.1| - 0.032 13.5 0.1 0.035 13.4 0.0 1.0 1 0 0 1 1 1 0 IRSp53/MIM homology domain BLOC1_2 PF10046.4 gi|89255748|ref|YP_513110.1| - 0.067 13.3 1.4 0.074 13.1 1.0 1.2 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 RE_ScaI PF09569.5 gi|89255748|ref|YP_513110.1| - 0.1 12.0 0.2 0.11 12.0 0.2 1.1 1 0 0 1 1 1 0 ScaI restriction endonuclease DUF3359 PF11839.3 gi|89255748|ref|YP_513110.1| - 0.14 12.5 0.6 0.18 12.1 0.3 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3359) Xan_ur_permease PF00860.15 gi|89255749|ref|YP_513111.1| - 5.6e-37 127.1 41.4 5.6e-37 127.1 28.7 1.5 2 0 0 2 2 2 1 Permease family Aminotran_1_2 PF00155.16 gi|89255750|ref|YP_513112.1| - 3e-22 79.0 0.0 5.3e-22 78.2 0.0 1.3 1 1 0 1 1 1 1 Aminotransferase class I and II OmpA PF00691.15 gi|89255751|ref|YP_513113.1| - 5.4e-15 55.5 0.2 1.3e-14 54.3 0.1 1.7 2 0 0 2 2 2 1 OmpA family DUF4223 PF13978.1 gi|89255751|ref|YP_513113.1| - 0.038 13.7 0.1 0.1 12.3 0.1 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF4223) FKBP_C PF00254.23 gi|89255752|ref|YP_513114.1| - 1.3e-11 44.3 0.2 1.5e-11 44.1 0.1 1.3 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase DUF1025 PF06262.6 gi|89255752|ref|YP_513114.1| - 0.13 12.0 0.0 0.18 11.5 0.0 1.3 1 0 0 1 1 1 0 Possibl zinc metallo-peptidase LYTB PF02401.13 gi|89255753|ref|YP_513115.1| - 1e-105 352.6 2.3 1.2e-105 352.4 1.6 1.0 1 0 0 1 1 1 1 LytB protein CM_1 PF07736.6 gi|89255754|ref|YP_513116.1| - 4.4e-44 149.3 0.1 4.9e-44 149.1 0.1 1.0 1 0 0 1 1 1 1 Chorismate mutase type I P22_CoatProtein PF11651.3 gi|89255754|ref|YP_513116.1| - 0.024 13.2 0.0 0.026 13.1 0.0 1.1 1 0 0 1 1 1 0 P22 coat protein - gene protein 5 RsbU_N PF08673.5 gi|89255754|ref|YP_513116.1| - 0.041 13.8 0.4 0.1 12.5 0.3 1.8 1 1 0 1 1 1 0 Phosphoserine phosphatase RsbU, N-terminal domain DUF2106 PF09879.4 gi|89255754|ref|YP_513116.1| - 0.065 12.5 0.0 0.075 12.3 0.0 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2106) DUF4445 PF14574.1 gi|89255754|ref|YP_513116.1| - 0.093 10.9 0.1 0.17 10.0 0.1 1.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4445) CDP-OH_P_transf PF01066.16 gi|89255755|ref|YP_513117.1| - 2e-16 60.1 5.7 2e-16 60.1 3.9 2.4 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase Far-17a_AIG1 PF04750.9 gi|89255755|ref|YP_513117.1| - 0.0075 15.4 6.2 0.4 9.8 0.4 2.5 2 0 0 2 2 2 2 FAR-17a/AIG1-like protein Cytochrom_B_N PF00033.14 gi|89255755|ref|YP_513117.1| - 3.3 7.0 11.9 5.1 6.3 6.7 2.4 1 1 1 2 2 2 0 Cytochrome b(N-terminal)/b6/petB SUR7 PF06687.7 gi|89255755|ref|YP_513117.1| - 6.1 6.3 13.8 1.3 8.5 0.7 3.1 1 1 1 3 3 3 0 SUR7/PalI family MotA_ExbB PF01618.11 gi|89255757|ref|YP_513119.1| - 4.8e-38 129.9 0.1 8.2e-38 129.1 0.1 1.4 1 0 0 1 1 1 1 MotA/TolQ/ExbB proton channel family ExbD PF02472.11 gi|89255758|ref|YP_513120.1| - 9.2e-29 100.0 0.2 1e-28 99.8 0.1 1.0 1 0 0 1 1 1 1 Biopolymer transport protein ExbD/TolR DUF1373 PF07117.6 gi|89255758|ref|YP_513120.1| - 0.0077 15.9 0.0 0.0097 15.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1373) DUF2149 PF09919.4 gi|89255758|ref|YP_513120.1| - 0.037 14.0 0.3 0.057 13.5 0.2 1.5 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2149) CAF-1_p150 PF11600.3 gi|89255759|ref|YP_513121.1| - 0.0013 18.1 51.1 0.0017 17.7 35.4 1.2 1 0 0 1 1 1 1 Chromatin assembly factor 1 complex p150 subunit, N-terminal Borrelia_P83 PF05262.6 gi|89255759|ref|YP_513121.1| - 0.0014 17.0 36.5 0.0016 16.8 25.3 1.1 1 0 0 1 1 1 1 Borrelia P83/100 protein TonB_2 PF13103.1 gi|89255759|ref|YP_513121.1| - 0.013 15.5 0.1 0.097 12.7 0.0 2.5 1 1 0 1 1 1 0 TonB C terminal TFIIA PF03153.8 gi|89255759|ref|YP_513121.1| - 0.026 14.4 22.8 0.034 14.0 15.8 1.2 1 0 0 1 1 1 0 Transcription factor IIA, alpha/beta subunit Membralin PF09746.4 gi|89255759|ref|YP_513121.1| - 4.4 6.2 18.0 0.49 9.3 8.4 1.8 1 1 1 2 2 2 0 Tumour-associated protein Mitofilin PF09731.4 gi|89255759|ref|YP_513121.1| - 6.7 5.2 52.6 9.6 4.7 36.4 1.2 1 0 0 1 1 1 0 Mitochondrial inner membrane protein Asp-B-Hydro_N PF05279.6 gi|89255759|ref|YP_513121.1| - 6.9 6.4 36.0 9 6.0 25.0 1.2 1 0 0 1 1 1 0 Aspartyl beta-hydroxylase N-terminal region PD40 PF07676.7 gi|89255760|ref|YP_513122.1| - 1e-27 95.2 14.5 7.1e-11 41.5 0.1 6.2 6 0 0 6 6 6 5 WD40-like Beta Propeller Repeat TolB_N PF04052.8 gi|89255760|ref|YP_513122.1| - 2.9e-10 40.1 0.7 7.2e-10 38.8 0.5 1.7 1 0 0 1 1 1 1 TolB amino-terminal domain DPPIV_N PF00930.16 gi|89255760|ref|YP_513122.1| - 1.4e-09 37.0 4.2 0.0014 17.3 0.0 4.8 2 1 3 5 5 5 3 Dipeptidyl peptidase IV (DPP IV) N-terminal region Pectate_lyase22 PF14583.1 gi|89255760|ref|YP_513122.1| - 3e-07 29.2 0.5 0.0027 16.2 0.0 4.1 3 1 2 5 5 5 2 Oligogalacturonate lyase Peptidase_S9_N PF02897.10 gi|89255760|ref|YP_513122.1| - 8.5e-05 21.2 0.0 0.006 15.2 0.0 2.4 1 1 1 2 2 2 2 Prolyl oligopeptidase, N-terminal beta-propeller domain YceG PF02618.11 gi|89255760|ref|YP_513122.1| - 0.02 13.9 1.3 0.032 13.2 0.9 1.2 1 0 0 1 1 1 0 YceG-like family OmpA PF00691.15 gi|89255762|ref|YP_513124.1| - 2.6e-16 59.7 0.0 8e-16 58.2 0.0 1.7 2 0 0 2 2 2 1 OmpA family DUF2624 PF11116.3 gi|89255762|ref|YP_513124.1| - 0.14 12.6 0.2 0.42 11.1 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2624) LPAM_1 PF08139.7 gi|89255762|ref|YP_513124.1| - 0.91 9.8 3.9 1.8 8.8 2.7 1.5 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site Acetyltransf_1 PF00583.19 gi|89255763|ref|YP_513125.1| - 1.6e-13 50.5 0.0 1.9e-13 50.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.1 gi|89255763|ref|YP_513125.1| - 3.3e-11 43.3 0.2 3.5e-11 43.2 0.1 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|89255763|ref|YP_513125.1| - 2.2e-10 40.5 0.0 2.7e-10 40.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|89255763|ref|YP_513125.1| - 1.1e-06 28.8 0.0 1.2e-06 28.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|89255763|ref|YP_513125.1| - 3.9e-06 26.5 0.0 5.5e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_10 PF13673.1 gi|89255763|ref|YP_513125.1| - 5.8e-05 23.1 0.0 6.6e-05 23.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|89255763|ref|YP_513125.1| - 0.0016 18.3 0.0 0.0017 18.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|89255763|ref|YP_513125.1| - 0.0033 17.2 0.0 0.0047 16.7 0.0 1.2 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.1 gi|89255763|ref|YP_513125.1| - 0.036 13.9 0.0 0.048 13.5 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DDE_3 PF13358.1 gi|89255764|ref|YP_513126.1| - 5.3e-31 107.3 0.0 9e-31 106.5 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.11 gi|89255764|ref|YP_513126.1| - 1.6e-07 31.0 0.2 1.1e-06 28.3 0.1 2.1 2 0 0 2 2 2 1 Transposase DDE_1 PF03184.14 gi|89255764|ref|YP_513126.1| - 6e-07 28.8 0.1 9.5e-07 28.1 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_28 PF13518.1 gi|89255764|ref|YP_513126.1| - 0.00058 19.8 0.0 0.0018 18.2 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain rve PF00665.21 gi|89255764|ref|YP_513126.1| - 0.00072 19.6 0.0 0.0013 18.7 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.1 gi|89255764|ref|YP_513126.1| - 0.0087 15.6 0.0 0.029 14.0 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.1 gi|89255764|ref|YP_513126.1| - 0.02 15.0 0.0 0.032 14.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix DDE_Tnp_ISAZ013 PF07592.6 gi|89255764|ref|YP_513126.1| - 0.041 12.6 0.7 0.32 9.7 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain CENP-B_N PF04218.8 gi|89255764|ref|YP_513126.1| - 0.069 12.5 0.0 0.7 9.3 0.0 2.5 3 0 0 3 3 3 0 CENP-B N-terminal DNA-binding domain DUF2805 PF10985.3 gi|89255765|ref|YP_513127.1| - 9.4e-23 79.9 0.4 1.1e-22 79.7 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2805) DNA_photolyase PF00875.13 gi|89255766|ref|YP_513128.1| - 7.7e-12 45.2 0.2 1.6e-11 44.2 0.1 1.5 2 0 0 2 2 2 1 DNA photolyase FAD_binding_7 PF03441.9 gi|89255766|ref|YP_513128.1| - 8.5e-10 38.2 0.3 1.6e-09 37.3 0.0 1.5 2 0 0 2 2 2 1 FAD binding domain of DNA photolyase FAD_binding_7 PF03441.9 gi|89255767|ref|YP_513129.1| - 7.7e-50 169.6 1.2 8.4e-50 169.5 0.8 1.0 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase GerPC PF10737.4 gi|89255767|ref|YP_513129.1| - 0.015 15.0 0.1 0.27 11.0 0.0 2.0 2 0 0 2 2 2 0 Spore germination protein GerPC DPRP PF04244.8 gi|89255768|ref|YP_513130.1| - 7.3e-82 274.2 0.3 1.6e-81 273.1 0.0 1.7 2 0 0 2 2 2 1 Deoxyribodipyrimidine photo-lyase-related protein FAD_binding_7 PF03441.9 gi|89255768|ref|YP_513130.1| - 4.1e-08 32.7 0.0 7.2e-08 31.9 0.0 1.4 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase DUF2256 PF10013.4 gi|89255769|ref|YP_513131.1| - 3.1e-24 84.4 11.1 3.5e-24 84.2 7.7 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2256) zf-MYND PF01753.13 gi|89255769|ref|YP_513131.1| - 0.0018 18.1 0.1 0.0022 17.8 0.1 1.3 1 1 0 1 1 1 1 MYND finger zf-HIT PF04438.11 gi|89255769|ref|YP_513131.1| - 0.011 15.3 3.6 0.74 9.5 0.1 2.2 2 0 0 2 2 2 0 HIT zinc finger zf-trcl PF13451.1 gi|89255769|ref|YP_513131.1| - 0.022 14.4 3.2 0.027 14.0 2.2 1.2 1 0 0 1 1 1 0 Probable zinc-binding domain Ecl1 PF12855.2 gi|89255769|ref|YP_513131.1| - 0.53 9.6 5.7 1.2 8.5 3.9 1.7 1 1 0 1 1 1 0 Life-span regulatory factor DUF2116 PF09889.4 gi|89255769|ref|YP_513131.1| - 0.53 10.1 5.8 6.3 6.6 4.0 2.1 1 1 0 1 1 1 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) zf-FCS PF06467.9 gi|89255769|ref|YP_513131.1| - 0.57 9.8 4.2 8.2 6.1 2.9 2.0 1 1 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif DUF329 PF03884.9 gi|89255769|ref|YP_513131.1| - 0.64 9.6 4.1 1.8 8.2 2.8 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF329) SBF PF01758.11 gi|89255770|ref|YP_513132.1| - 6.1e-24 84.4 27.8 6.1e-24 84.4 19.3 2.2 2 1 1 3 3 3 1 Sodium Bile acid symporter family DUF340 PF03956.8 gi|89255770|ref|YP_513132.1| - 0.0025 17.1 9.3 0.0025 17.1 6.5 3.9 2 2 1 4 4 4 3 Membrane protein of unknown function (DUF340) PAS_6 PF08348.6 gi|89255771|ref|YP_513133.1| - 4e-31 107.0 0.2 5.6e-31 106.5 0.1 1.2 1 0 0 1 1 1 1 YheO-like PAS domain Glyco_transf_8 PF01501.15 gi|89255771|ref|YP_513133.1| - 0.012 14.9 0.3 0.015 14.6 0.2 1.2 1 0 0 1 1 1 0 Glycosyl transferase family 8 zf-Sec23_Sec24 PF04810.10 gi|89255771|ref|YP_513133.1| - 0.13 11.8 0.0 0.38 10.3 0.0 1.8 1 0 0 1 1 1 0 Sec23/Sec24 zinc finger NAAA-beta PF15508.1 gi|89255771|ref|YP_513133.1| - 0.15 12.3 0.5 2.2 8.6 0.0 2.6 2 1 1 3 3 3 0 beta subunit of N-acylethanolamine-hydrolyzing acid amidase TauE PF01925.14 gi|89255772|ref|YP_513134.1| - 1e-23 84.0 14.5 1.3e-23 83.7 10.1 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF3353 PF11833.3 gi|89255772|ref|YP_513134.1| - 1.4 8.3 5.3 0.34 10.3 0.7 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF3353) Halogen_Hydrol PF10112.4 gi|89255772|ref|YP_513134.1| - 4.1 6.7 5.8 0.54 9.6 0.2 2.1 1 1 2 3 3 3 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein DUF443 PF04276.7 gi|89255772|ref|YP_513134.1| - 4.6 6.6 10.9 7.3 5.9 7.5 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF443) DUF423 PF04241.10 gi|89255773|ref|YP_513135.1| - 4.1e-20 71.4 2.6 4.1e-20 71.4 1.8 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF423) Tetraspannin PF00335.15 gi|89255773|ref|YP_513135.1| - 0.086 12.1 7.5 0.099 11.9 5.2 1.3 1 0 0 1 1 1 0 Tetraspanin family MerC PF03203.9 gi|89255773|ref|YP_513135.1| - 0.43 10.9 5.0 0.9 9.9 2.4 2.0 1 1 1 2 2 2 0 MerC mercury resistance protein DUF202 PF02656.10 gi|89255773|ref|YP_513135.1| - 6.5 7.0 6.4 30 4.9 0.0 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF202) DDE_3 PF13358.1 gi|89255774|ref|YP_513136.1| - 5.3e-31 107.3 0.0 9e-31 106.5 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.11 gi|89255774|ref|YP_513136.1| - 1.6e-07 31.0 0.2 1.1e-06 28.3 0.1 2.1 2 0 0 2 2 2 1 Transposase DDE_1 PF03184.14 gi|89255774|ref|YP_513136.1| - 6e-07 28.8 0.1 9.5e-07 28.1 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_28 PF13518.1 gi|89255774|ref|YP_513136.1| - 0.00058 19.8 0.0 0.0018 18.2 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain rve PF00665.21 gi|89255774|ref|YP_513136.1| - 0.00072 19.6 0.0 0.0013 18.7 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.1 gi|89255774|ref|YP_513136.1| - 0.0087 15.6 0.0 0.029 14.0 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.1 gi|89255774|ref|YP_513136.1| - 0.02 15.0 0.0 0.032 14.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix DDE_Tnp_ISAZ013 PF07592.6 gi|89255774|ref|YP_513136.1| - 0.041 12.6 0.7 0.32 9.7 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain CENP-B_N PF04218.8 gi|89255774|ref|YP_513136.1| - 0.069 12.5 0.0 0.7 9.3 0.0 2.5 3 0 0 3 3 3 0 CENP-B N-terminal DNA-binding domain DUF393 PF04134.7 gi|89255775|ref|YP_513137.1| - 2e-24 86.8 0.1 2.2e-24 86.7 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function, DUF393 UbiA PF01040.13 gi|89255776|ref|YP_513138.1| - 4e-33 114.7 30.8 5.6e-33 114.2 21.4 1.3 1 0 0 1 1 1 1 UbiA prenyltransferase family Chor_lyase PF04345.8 gi|89255777|ref|YP_513139.1| - 5.4e-16 58.4 0.1 6.4e-16 58.2 0.0 1.0 1 0 0 1 1 1 1 Chorismate lyase DUF98 PF01947.11 gi|89255777|ref|YP_513139.1| - 0.002 17.8 0.0 0.0026 17.4 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF98) HGD-D PF06050.8 gi|89255777|ref|YP_513139.1| - 0.049 12.4 0.0 0.063 12.0 0.0 1.3 1 0 0 1 1 1 0 2-hydroxyglutaryl-CoA dehydratase, D-component Peptidase_C37 PF05416.7 gi|89255777|ref|YP_513139.1| - 0.059 11.6 0.0 0.061 11.6 0.0 1.2 1 0 0 1 1 1 0 Southampton virus-type processing peptidase RNase_PH PF01138.16 gi|89255778|ref|YP_513140.1| - 2.2e-28 99.2 0.1 3.9e-28 98.4 0.1 1.4 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.10 gi|89255778|ref|YP_513140.1| - 8e-14 51.3 0.9 1.4e-13 50.5 0.3 1.7 2 0 0 2 2 2 1 3' exoribonuclease family, domain 2 DUF3287 PF11690.3 gi|89255779|ref|YP_513141.1| - 0.0028 17.6 1.0 0.0031 17.5 0.7 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3287) EcoEI_R_C PF08463.5 gi|89255779|ref|YP_513141.1| - 0.011 15.6 4.1 0.013 15.3 2.8 1.1 1 0 0 1 1 1 0 EcoEI R protein C-terminal DUF4446 PF14584.1 gi|89255779|ref|YP_513141.1| - 0.015 15.1 1.9 0.02 14.7 1.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4446) YopR_core PF09025.5 gi|89255779|ref|YP_513141.1| - 0.016 15.1 1.7 0.018 15.0 1.2 1.1 1 0 0 1 1 1 0 YopR Core HrpE PF06188.7 gi|89255779|ref|YP_513141.1| - 0.03 14.0 0.5 0.035 13.8 0.4 1.1 1 0 0 1 1 1 0 HrpE/YscL/FliH and V-type ATPase subunit E zf-C4H2 PF10146.4 gi|89255779|ref|YP_513141.1| - 0.036 14.0 0.8 0.038 14.0 0.5 1.2 1 0 0 1 1 1 0 Zinc finger-containing protein FlxA PF14282.1 gi|89255779|ref|YP_513141.1| - 0.043 13.7 5.1 0.057 13.3 3.5 1.2 1 0 0 1 1 1 0 FlxA-like protein DUF342 PF03961.8 gi|89255779|ref|YP_513141.1| - 0.055 11.8 2.8 0.055 11.8 1.9 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF342) YkuI_C PF10388.4 gi|89255779|ref|YP_513141.1| - 0.057 13.1 3.9 0.07 12.7 2.7 1.1 1 0 0 1 1 1 0 EAL-domain associated signalling protein domain Prefoldin_2 PF01920.15 gi|89255779|ref|YP_513141.1| - 0.081 12.6 8.0 0.065 12.9 3.7 1.9 1 1 1 2 2 2 0 Prefoldin subunit DUF3373 PF11853.3 gi|89255779|ref|YP_513141.1| - 0.09 11.2 2.1 0.1 11.1 1.5 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3373) CtIP_N PF10482.4 gi|89255779|ref|YP_513141.1| - 0.12 12.1 6.3 0.14 11.9 4.2 1.5 1 1 0 1 1 1 0 Tumour-suppressor protein CtIP N-terminal domain DUF4140 PF13600.1 gi|89255779|ref|YP_513141.1| - 0.15 12.4 0.8 0.21 12.0 0.6 1.2 1 0 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) VIT1 PF01988.14 gi|89255779|ref|YP_513141.1| - 0.16 11.4 0.3 0.18 11.2 0.2 1.1 1 0 0 1 1 1 0 VIT family DUF733 PF05306.6 gi|89255779|ref|YP_513141.1| - 0.17 12.1 5.6 0.22 11.8 3.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF733) Acetyltransf_11 PF13720.1 gi|89255779|ref|YP_513141.1| - 0.19 12.0 1.2 0.33 11.1 0.8 1.7 1 1 0 1 1 1 0 Udp N-acetylglucosamine O-acyltransferase; Domain 2 GP41 PF00517.12 gi|89255779|ref|YP_513141.1| - 0.21 11.1 2.3 0.28 10.6 1.6 1.1 1 0 0 1 1 1 0 Retroviral envelope protein NuA4 PF09340.5 gi|89255779|ref|YP_513141.1| - 0.26 10.9 3.4 0.16 11.5 1.0 1.7 2 0 0 2 2 2 0 Histone acetyltransferase subunit NuA4 DUF349 PF03993.7 gi|89255779|ref|YP_513141.1| - 0.5 10.5 3.4 0.77 9.9 2.4 1.3 1 0 0 1 1 1 0 Domain of Unknown Function (DUF349) IncA PF04156.9 gi|89255779|ref|YP_513141.1| - 0.73 9.3 6.1 0.8 9.2 4.2 1.1 1 0 0 1 1 1 0 IncA protein XhlA PF10779.4 gi|89255779|ref|YP_513141.1| - 0.8 9.6 3.8 1.9 8.4 2.7 1.7 1 1 0 1 1 1 0 Haemolysin XhlA DUF3251 PF11622.3 gi|89255779|ref|YP_513141.1| - 1.2 8.5 3.8 2.4 7.5 0.7 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3251) N_methyl_2 PF13544.1 gi|89255780|ref|YP_513142.1| - 0.0039 16.6 4.3 0.016 14.6 0.7 2.4 2 0 0 2 2 2 1 Type IV pilin N-term methylation site GFxxxE NPCBM PF08305.6 gi|89255780|ref|YP_513142.1| - 0.067 13.1 0.0 0.19 11.7 0.0 1.7 2 0 0 2 2 2 0 NPCBM/NEW2 domain N_methyl PF07963.7 gi|89255780|ref|YP_513142.1| - 0.91 9.4 9.1 0.12 12.2 2.0 2.4 2 0 0 2 2 2 0 Prokaryotic N-terminal methylation motif Peptidase_M48 PF01435.13 gi|89255781|ref|YP_513143.1| - 2e-35 122.4 2.6 2.7e-35 121.9 1.8 1.2 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|89255781|ref|YP_513143.1| - 9.9e-06 24.7 2.1 9.9e-06 24.7 1.5 2.3 1 1 2 3 3 3 1 BlaR1 peptidase M56 DUF2268 PF10026.4 gi|89255781|ref|YP_513143.1| - 0.015 14.7 0.1 0.025 13.9 0.0 1.3 1 0 0 1 1 1 0 Predicted Zn-dependent protease (DUF2268) Oxidored_q3 PF00499.15 gi|89255781|ref|YP_513143.1| - 0.54 10.0 23.5 14 5.4 10.9 2.5 1 1 1 2 2 2 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 zf-DHHC PF01529.15 gi|89255781|ref|YP_513143.1| - 1.6 8.0 19.0 2.5 7.4 3.9 2.2 2 0 0 2 2 2 0 DHHC palmitoyltransferase DUF4064 PF13273.1 gi|89255781|ref|YP_513143.1| - 4.6 7.3 10.2 3.2 7.9 1.4 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF4064) LemA PF04011.7 gi|89255782|ref|YP_513144.1| - 9.2e-41 138.9 12.9 1.1e-40 138.7 8.9 1.0 1 0 0 1 1 1 1 LemA family DASH_Spc34 PF08657.5 gi|89255782|ref|YP_513144.1| - 0.035 13.7 4.9 0.047 13.3 3.4 1.1 1 0 0 1 1 1 0 DASH complex subunit Spc34 Inhibitor_I53 PF11714.3 gi|89255782|ref|YP_513144.1| - 0.08 12.9 1.5 0.13 12.2 0.6 1.7 1 1 0 1 1 1 0 Thrombin inhibitor Madanin PNK3P PF08645.6 gi|89255782|ref|YP_513144.1| - 0.09 12.2 4.9 0.27 10.6 3.4 1.9 1 1 0 1 1 1 0 Polynucleotide kinase 3 phosphatase Adenylsucc_synt PF00709.16 gi|89255782|ref|YP_513144.1| - 0.12 11.0 2.4 0.16 10.6 1.7 1.1 1 0 0 1 1 1 0 Adenylosuccinate synthetase Chordopox_A13L PF05961.6 gi|89255782|ref|YP_513144.1| - 0.12 12.3 2.1 0.38 10.7 1.4 1.9 1 0 0 1 1 1 0 Chordopoxvirus A13L protein SoxE PF06525.6 gi|89255782|ref|YP_513144.1| - 0.23 10.6 3.9 0.38 10.0 2.6 1.4 1 1 0 1 1 1 0 Sulfocyanin (SoxE) PspB PF06667.7 gi|89255782|ref|YP_513144.1| - 0.33 10.9 2.8 0.44 10.5 0.4 2.3 2 0 0 2 2 2 0 Phage shock protein B Occludin_ELL PF07303.8 gi|89255782|ref|YP_513144.1| - 0.63 10.7 7.3 2.6 8.8 0.8 2.5 1 1 2 3 3 3 0 Occludin homology domain UPF0118 PF01594.11 gi|89255782|ref|YP_513144.1| - 2.1 7.2 6.2 0.86 8.5 1.2 2.0 1 1 1 2 2 2 0 Domain of unknown function DUF20 Holin_LLH PF09682.5 gi|89255782|ref|YP_513144.1| - 2.3 8.3 13.9 0.22 11.6 0.2 2.7 1 1 2 3 3 3 0 Phage holin protein (Holin_LLH) YjgP_YjgQ PF03739.9 gi|89255782|ref|YP_513144.1| - 3.6 6.2 8.2 11 4.5 5.7 1.8 1 1 0 1 1 1 0 Predicted permease YjgP/YjgQ family DDE_Tnp_1_2 PF13586.1 gi|89255783|ref|YP_513145.1| - 5.3e-16 58.5 0.2 1.5e-15 57.1 0.1 1.8 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|89255783|ref|YP_513145.1| - 2.9e-13 49.8 1.0 1e-12 48.1 0.7 1.7 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|89255783|ref|YP_513145.1| - 2.5e-09 37.0 0.1 3.4e-09 36.6 0.1 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF4096 PF13340.1 gi|89255783|ref|YP_513145.1| - 0.00065 19.5 0.0 0.0013 18.5 0.0 1.5 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) HTH_5 PF01022.15 gi|89255784|ref|YP_513146.1| - 1.2e-07 31.2 0.4 2.4e-07 30.3 0.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|89255784|ref|YP_513146.1| - 5.1e-06 26.1 0.1 9.6e-06 25.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|89255784|ref|YP_513146.1| - 0.0028 17.3 0.0 0.0074 15.9 0.0 1.7 2 1 1 3 3 3 1 MarR family HTH_34 PF13601.1 gi|89255784|ref|YP_513146.1| - 0.08 12.9 0.0 0.18 11.8 0.0 1.6 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_Crp_2 PF13545.1 gi|89255784|ref|YP_513146.1| - 0.098 12.4 0.2 0.25 11.1 0.0 1.7 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain Peptidase_C39_2 PF13529.1 gi|89255785|ref|YP_513147.1| - 1.8e-10 41.3 1.0 1.9e-10 41.2 0.1 1.5 2 0 0 2 2 2 1 Peptidase_C39 like family Peptidase_C39 PF03412.10 gi|89255785|ref|YP_513147.1| - 4.2e-06 26.6 0.0 7.9e-06 25.7 0.0 1.5 1 0 0 1 1 1 1 Peptidase C39 family DUF3335 PF11814.3 gi|89255785|ref|YP_513147.1| - 9.7e-05 21.5 0.0 0.0002 20.6 0.0 1.6 2 0 0 2 2 2 1 Peptidase_C39 like family PGM_PMM_II PF02879.11 gi|89255785|ref|YP_513147.1| - 0.068 13.5 0.3 0.27 11.5 0.0 1.9 2 0 0 2 2 2 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NAD_Gly3P_dh_C PF07479.9 gi|89255786|ref|YP_513148.1| - 5.8e-47 159.1 0.6 9.4e-47 158.4 0.4 1.3 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus NAD_Gly3P_dh_N PF01210.18 gi|89255786|ref|YP_513148.1| - 1.3e-39 135.4 0.0 2e-39 134.8 0.0 1.3 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.11 gi|89255786|ref|YP_513148.1| - 1.9e-07 30.6 0.0 4.1e-07 29.5 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA F420_oxidored PF03807.12 gi|89255786|ref|YP_513148.1| - 7.6e-06 26.2 0.0 3.8e-05 24.0 0.0 2.1 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_10 PF13460.1 gi|89255786|ref|YP_513148.1| - 0.0014 18.6 0.0 0.0026 17.7 0.0 1.5 1 0 0 1 1 1 1 NADH(P)-binding DAO PF01266.19 gi|89255786|ref|YP_513148.1| - 0.0064 15.4 0.4 0.011 14.7 0.3 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase LrgB PF04172.11 gi|89255786|ref|YP_513148.1| - 0.0084 15.2 1.9 0.0084 15.2 1.3 1.6 2 0 0 2 2 2 1 LrgB-like family 3HCDH_N PF02737.13 gi|89255786|ref|YP_513148.1| - 0.013 15.1 0.0 0.023 14.3 0.0 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|89255786|ref|YP_513148.1| - 0.019 14.7 0.0 0.045 13.5 0.0 1.7 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Pyr_redox_2 PF07992.9 gi|89255786|ref|YP_513148.1| - 0.023 14.5 0.0 0.82 9.5 0.0 2.5 1 1 1 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Shikimate_DH PF01488.15 gi|89255786|ref|YP_513148.1| - 0.028 14.4 0.6 4.7 7.3 0.0 3.5 3 2 0 3 3 3 0 Shikimate / quinate 5-dehydrogenase ThiF PF00899.16 gi|89255786|ref|YP_513148.1| - 0.054 13.3 1.3 0.31 10.8 0.4 2.5 1 1 1 2 2 2 0 ThiF family Como_SCP PF02248.11 gi|89255786|ref|YP_513148.1| - 0.069 12.5 0.0 0.13 11.6 0.0 1.4 1 0 0 1 1 1 0 Small coat protein UDPG_MGDP_dh_C PF03720.10 gi|89255786|ref|YP_513148.1| - 0.11 12.6 0.0 0.26 11.4 0.0 1.6 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Colicin_V PF02674.11 gi|89255787|ref|YP_513149.1| - 1.4e-15 57.4 16.0 1.6e-15 57.2 11.1 1.0 1 0 0 1 1 1 1 Colicin V production protein DUF3816 PF12822.2 gi|89255787|ref|YP_513149.1| - 0.095 12.5 13.5 0.11 12.3 9.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3816) Bac_rhodopsin PF01036.13 gi|89255787|ref|YP_513149.1| - 0.11 11.7 8.5 0.15 11.3 5.9 1.1 1 0 0 1 1 1 0 Bacteriorhodopsin-like protein DUF373 PF04123.8 gi|89255787|ref|YP_513149.1| - 0.32 9.9 10.1 0.44 9.5 7.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF373) Acyl_transf_3 PF01757.17 gi|89255787|ref|YP_513149.1| - 0.34 9.6 10.0 0.45 9.3 6.9 1.1 1 0 0 1 1 1 0 Acyltransferase family AAA_25 PF13481.1 gi|89255788|ref|YP_513150.1| - 2.8e-26 92.1 0.0 5.5e-26 91.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain KaiC PF06745.8 gi|89255788|ref|YP_513150.1| - 6.4e-17 61.4 2.9 1.2e-08 34.3 0.1 2.2 1 1 1 2 2 2 2 KaiC ChlI PF13541.1 gi|89255788|ref|YP_513150.1| - 3.3e-13 49.1 0.1 8.9e-13 47.8 0.1 1.7 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase Rad51 PF08423.6 gi|89255788|ref|YP_513150.1| - 1.9e-06 26.9 0.7 1.3e-05 24.2 0.5 2.1 1 1 0 1 1 1 1 Rad51 Lon_C PF05362.8 gi|89255788|ref|YP_513150.1| - 4.7e-06 26.0 1.0 8.2e-06 25.2 0.2 1.7 2 0 0 2 2 2 1 Lon protease (S16) C-terminal proteolytic domain DnaB_C PF03796.10 gi|89255788|ref|YP_513150.1| - 5.7e-06 25.4 0.4 0.00014 20.8 0.0 2.2 1 1 1 2 2 2 1 DnaB-like helicase C terminal domain DUF2075 PF09848.4 gi|89255788|ref|YP_513150.1| - 5.9e-05 22.2 0.1 7.8e-05 21.7 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) GvpD PF07088.6 gi|89255788|ref|YP_513150.1| - 0.00028 19.3 0.5 0.024 12.9 0.2 2.9 1 1 1 2 2 2 1 GvpD gas vesicle protein AAA_24 PF13479.1 gi|89255788|ref|YP_513150.1| - 0.00091 18.8 0.0 0.0032 17.0 0.0 2.0 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|89255788|ref|YP_513150.1| - 0.0013 18.8 0.1 0.0026 17.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|89255788|ref|YP_513150.1| - 0.0021 17.9 0.0 0.0052 16.6 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|89255788|ref|YP_513150.1| - 0.0024 17.6 0.0 0.005 16.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|89255788|ref|YP_513150.1| - 0.0027 17.9 0.1 0.0057 16.8 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|89255788|ref|YP_513150.1| - 0.013 15.4 0.2 0.035 14.0 0.2 1.7 1 1 1 2 2 2 0 AAA ATPase domain PilZ PF07238.9 gi|89255789|ref|YP_513151.1| - 7.7e-05 22.6 0.0 0.00012 22.0 0.0 1.3 1 0 0 1 1 1 1 PilZ domain Membralin PF09746.4 gi|89255789|ref|YP_513151.1| - 0.0018 17.3 3.0 0.0026 16.8 2.1 1.1 1 0 0 1 1 1 1 Tumour-associated protein SNARE_assoc PF09335.6 gi|89255790|ref|YP_513152.1| - 3.3e-15 56.3 7.0 3.3e-15 56.3 4.9 1.7 2 0 0 2 2 2 1 SNARE associated Golgi protein DUF3353 PF11833.3 gi|89255790|ref|YP_513152.1| - 0.076 12.4 0.1 0.076 12.4 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3353) DUF2636 PF11120.3 gi|89255790|ref|YP_513152.1| - 3.4 7.2 7.6 13 5.3 0.3 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF2636) Chorismate_synt PF01264.16 gi|89255791|ref|YP_513153.1| - 4.9e-145 482.3 0.1 5.6e-145 482.1 0.1 1.0 1 0 0 1 1 1 1 Chorismate synthase PQ-loop PF04193.9 gi|89255792|ref|YP_513154.1| - 4.2e-22 77.4 26.2 1e-13 50.5 4.6 3.1 3 1 0 3 3 3 2 PQ loop repeat SelR PF01641.13 gi|89255793|ref|YP_513155.1| - 3e-50 169.0 0.0 3.8e-50 168.7 0.0 1.1 1 0 0 1 1 1 1 SelR domain Sod_Cu PF00080.15 gi|89255794|ref|YP_513156.1| - 4.9e-30 104.5 1.6 6.1e-30 104.2 1.1 1.1 1 0 0 1 1 1 1 Copper/zinc superoxide dismutase (SODC) FA_hydroxylase PF04116.8 gi|89255795|ref|YP_513157.1| - 3.9e-16 59.4 10.1 3.9e-16 59.4 7.0 2.1 2 0 0 2 2 2 1 Fatty acid hydroxylase superfamily AA_permease PF00324.16 gi|89255796|ref|YP_513158.1| - 9.3e-79 264.9 50.0 1.1e-78 264.7 34.6 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.1 gi|89255796|ref|YP_513158.1| - 5.7e-32 110.8 54.1 7.6e-32 110.3 37.5 1.1 1 0 0 1 1 1 1 Amino acid permease DUF4579 PF15158.1 gi|89255796|ref|YP_513158.1| - 0.54 9.7 2.8 1.1 8.7 0.4 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4579) MannoseP_isomer PF01050.13 gi|89255797|ref|YP_513159.1| - 7.1e-40 136.0 0.4 8.2e-40 135.8 0.3 1.0 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_2 PF07883.6 gi|89255797|ref|YP_513159.1| - 1.5e-08 34.0 0.1 2.2e-08 33.4 0.1 1.3 1 0 0 1 1 1 1 Cupin domain Cupin_7 PF12973.2 gi|89255797|ref|YP_513159.1| - 0.013 15.3 0.0 0.019 14.7 0.0 1.3 1 0 0 1 1 1 0 ChrR Cupin-like domain DUF3850 PF12961.2 gi|89255797|ref|YP_513159.1| - 0.022 14.7 0.3 0.044 13.7 0.1 1.6 1 1 1 2 2 2 0 Domain of Unknown Function with PDB structure (DUF3850) Aminotran_1_2 PF00155.16 gi|89255798|ref|YP_513160.1| - 1.3e-43 149.3 0.0 1.5e-43 149.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|89255798|ref|YP_513160.1| - 4.8e-06 25.8 0.1 7.8e-06 25.1 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|89255798|ref|YP_513160.1| - 9.9e-06 24.8 0.1 5e-05 22.5 0.1 1.8 1 1 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|89255798|ref|YP_513160.1| - 6.8e-05 21.3 0.0 0.00013 20.4 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.14 gi|89255798|ref|YP_513160.1| - 0.0025 16.5 0.0 0.0055 15.4 0.0 1.5 1 1 0 1 1 1 1 Aminotransferase class-V Cation_efflux PF01545.16 gi|89255799|ref|YP_513161.1| - 3.6e-45 154.2 11.2 4.2e-45 154.0 7.7 1.0 1 0 0 1 1 1 1 Cation efflux family ATG2_CAD PF13329.1 gi|89255799|ref|YP_513161.1| - 0.01 15.4 0.2 0.038 13.5 0.0 1.9 2 0 0 2 2 2 0 Autophagy-related protein 2 CAD motif SMC_N PF02463.14 gi|89255800|ref|YP_513162.1| - 1.1e-21 77.1 10.4 2.3e-21 76.0 7.2 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|89255800|ref|YP_513162.1| - 1.1e-18 68.2 14.1 1.1e-18 68.2 9.8 3.3 2 1 1 3 3 3 1 AAA domain AAA_21 PF13304.1 gi|89255800|ref|YP_513162.1| - 2.4e-13 50.7 3.8 6e-11 42.8 2.6 2.2 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|89255800|ref|YP_513162.1| - 1.1e-07 31.2 0.0 2.1e-07 30.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|89255800|ref|YP_513162.1| - 0.023 13.8 1.5 0.045 12.9 0.0 2.3 2 1 0 2 2 2 0 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|89255800|ref|YP_513162.1| - 0.11 12.6 7.0 0.24 11.5 1.3 3.8 1 1 2 3 3 3 0 AAA domain AAA_16 PF13191.1 gi|89255800|ref|YP_513162.1| - 0.15 12.0 7.7 20 5.0 5.3 3.3 1 1 0 1 1 1 0 AAA ATPase domain Hemerythrin PF01814.18 gi|89255800|ref|YP_513162.1| - 0.38 10.8 5.1 0.3 11.2 1.1 2.5 2 1 0 2 2 2 0 Hemerythrin HHE cation binding domain DUF4363 PF14276.1 gi|89255800|ref|YP_513162.1| - 2.2 7.9 27.2 0.14 11.8 1.3 5.4 4 1 1 5 5 5 0 Domain of unknown function (DUF4363) MIT PF04212.13 gi|89255801|ref|YP_513163.1| - 0.0017 18.2 1.3 1.2 9.1 0.1 2.9 2 1 0 2 2 2 2 MIT (microtubule interacting and transport) domain WXG100 PF06013.7 gi|89255801|ref|YP_513163.1| - 0.0026 17.7 3.0 0.0026 17.7 2.1 3.2 2 1 1 3 3 3 1 Proteins of 100 residues with WXG Hormone_3 PF00159.13 gi|89255801|ref|YP_513163.1| - 0.01 15.8 3.6 0.035 14.1 0.1 2.7 2 0 0 2 2 2 0 Pancreatic hormone peptide 23S_rRNA_IVP PF05635.6 gi|89255801|ref|YP_513163.1| - 0.054 13.4 3.0 0.072 13.0 0.6 2.4 3 0 0 3 3 3 0 23S rRNA-intervening sequence protein TPR_MLP1_2 PF07926.7 gi|89255801|ref|YP_513163.1| - 1.4 8.6 12.3 0.24 11.1 4.8 2.3 2 1 0 2 2 2 0 TPR/MLP1/MLP2-like protein N_methyl PF07963.7 gi|89255802|ref|YP_513164.1| - 3.2e-07 29.7 3.2 6.9e-07 28.6 2.2 1.6 1 0 0 1 1 1 1 Prokaryotic N-terminal methylation motif N_methyl_2 PF13544.1 gi|89255802|ref|YP_513164.1| - 3.6e-07 29.3 1.4 6.4e-07 28.5 1.0 1.5 1 0 0 1 1 1 1 Type IV pilin N-term methylation site GFxxxE N_methyl_3 PF13633.1 gi|89255802|ref|YP_513164.1| - 0.0017 18.0 5.6 0.0032 17.2 3.9 1.5 1 0 0 1 1 1 1 Prokaryotic N-terminal methylation site DUF3810 PF12725.2 gi|89255802|ref|YP_513164.1| - 0.013 14.4 0.2 0.015 14.1 0.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3810) N_methyl_2 PF13544.1 gi|89255803|ref|YP_513165.1| - 5.5e-10 38.2 1.0 8.1e-10 37.7 0.7 1.3 1 0 0 1 1 1 1 Type IV pilin N-term methylation site GFxxxE N_methyl PF07963.7 gi|89255803|ref|YP_513165.1| - 1.9e-08 33.5 2.9 2.5e-08 33.1 2.0 1.2 1 0 0 1 1 1 1 Prokaryotic N-terminal methylation motif N_methyl_3 PF13633.1 gi|89255803|ref|YP_513165.1| - 1.5e-05 24.4 7.7 1.7e-05 24.3 5.4 1.1 1 0 0 1 1 1 1 Prokaryotic N-terminal methylation site Bundlin PF05307.6 gi|89255803|ref|YP_513165.1| - 0.0026 17.5 0.4 0.0026 17.5 0.3 1.0 1 0 0 1 1 1 1 Bundlin Shufflon_N PF04917.7 gi|89255803|ref|YP_513165.1| - 0.028 13.4 0.2 0.031 13.3 0.2 1.0 1 0 0 1 1 1 0 Bacterial shufflon protein, N-terminal constant region COX2-transmemb PF09125.5 gi|89255803|ref|YP_513165.1| - 0.14 11.7 0.6 0.17 11.4 0.4 1.2 1 0 0 1 1 1 0 Cytochrome C oxidase subunit II, transmembrane DUF1620 PF07774.8 gi|89255803|ref|YP_513165.1| - 0.15 11.3 0.3 0.16 11.2 0.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1620) Class_IIIsignal PF04021.7 gi|89255803|ref|YP_513165.1| - 2.4 7.9 7.3 3 7.6 5.1 1.1 1 0 0 1 1 1 0 Class III signal peptide PAP2 PF01569.16 gi|89255804|ref|YP_513166.1| - 2.5e-23 82.1 8.9 2.5e-23 82.1 6.2 1.7 2 0 0 2 2 2 1 PAP2 superfamily PAP2_C PF14360.1 gi|89255804|ref|YP_513166.1| - 0.0073 16.5 7.6 0.0073 16.5 5.2 2.0 2 0 0 2 2 2 1 PAP2 superfamily C-terminal PAP2_3 PF14378.1 gi|89255804|ref|YP_513166.1| - 0.23 10.9 4.0 0.34 10.4 2.8 1.5 1 1 0 1 1 1 0 PAP2 superfamily TctB PF07331.6 gi|89255804|ref|YP_513166.1| - 3.6 7.2 13.8 3.5e+02 0.8 9.6 2.4 1 1 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family THF_DHG_CYH_C PF02882.14 gi|89255805|ref|YP_513167.1| - 8.4e-68 226.5 4.0 1.3e-67 225.9 2.8 1.3 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THF_DHG_CYH PF00763.18 gi|89255805|ref|YP_513167.1| - 7.1e-44 148.5 2.3 7.1e-44 148.5 1.6 1.7 2 0 0 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain UDPG_MGDP_dh_C PF03720.10 gi|89255805|ref|YP_513167.1| - 0.064 13.4 0.1 0.19 11.9 0.0 1.9 2 1 1 3 3 3 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Pilus_CpaD PF09476.5 gi|89255805|ref|YP_513167.1| - 0.074 12.5 0.1 1.4 8.3 0.0 2.2 2 0 0 2 2 2 0 Pilus biogenesis CpaD protein (pilus_cpaD) AIRS_C PF02769.17 gi|89255806|ref|YP_513168.1| - 7.4e-27 94.2 0.0 1.2e-26 93.5 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|89255806|ref|YP_513168.1| - 1.9e-17 63.2 0.1 3.6e-17 62.4 0.1 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain SAICAR_synt PF01259.13 gi|89255807|ref|YP_513169.1| - 3.6e-76 255.5 0.0 6.4e-76 254.7 0.0 1.3 1 0 0 1 1 1 1 SAICAR synthetase GARS_A PF01071.14 gi|89255807|ref|YP_513169.1| - 2.2e-53 180.7 0.0 4.6e-53 179.6 0.0 1.6 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.10 gi|89255807|ref|YP_513169.1| - 2.3e-29 101.8 0.9 2.3e-28 98.5 0.2 2.7 3 0 0 3 3 3 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.11 gi|89255807|ref|YP_513169.1| - 3.5e-21 75.1 0.0 7.1e-21 74.1 0.0 1.6 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_4 PF13535.1 gi|89255807|ref|YP_513169.1| - 3.2e-09 36.7 0.0 7.1e-09 35.6 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain Formyl_trans_N PF00551.14 gi|89255808|ref|YP_513170.1| - 2.3e-53 180.4 0.2 2.5e-53 180.2 0.2 1.0 1 0 0 1 1 1 1 Formyl transferase AIRC PF00731.15 gi|89255809|ref|YP_513171.1| - 2.2e-67 225.0 0.9 2.4e-67 224.8 0.6 1.0 1 0 0 1 1 1 1 AIR carboxylase ATP-grasp PF02222.17 gi|89255810|ref|YP_513172.1| - 1.4e-51 174.2 0.0 3e-51 173.2 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|89255810|ref|YP_513172.1| - 1.3e-14 54.3 0.0 2.1e-14 53.6 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.14 gi|89255810|ref|YP_513172.1| - 1.5e-05 24.6 0.0 5e-05 22.9 0.0 1.8 1 1 1 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CPSase_L_D2 PF02786.12 gi|89255810|ref|YP_513172.1| - 2.1e-05 23.9 0.0 3.6e-05 23.1 0.0 1.4 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATPgrasp_Ter PF15632.1 gi|89255810|ref|YP_513172.1| - 0.013 14.3 0.0 0.053 12.2 0.0 1.8 2 0 0 2 2 2 0 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.9 gi|89255810|ref|YP_513172.1| - 0.023 14.5 0.1 0.064 13.1 0.0 1.8 1 1 1 2 2 2 0 ATP-grasp domain DDE_Tnp_1_2 PF13586.1 gi|89255811|ref|YP_513173.1| - 4.4e-16 58.8 0.1 1.3e-15 57.3 0.1 1.8 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|89255811|ref|YP_513173.1| - 2.5e-13 50.1 1.1 8.5e-13 48.3 0.7 1.7 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|89255811|ref|YP_513173.1| - 2.1e-09 37.2 0.1 2.9e-09 36.8 0.1 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF4096 PF13340.1 gi|89255811|ref|YP_513173.1| - 0.00058 19.6 0.0 0.0012 18.7 0.0 1.5 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) Sua5_yciO_yrdC PF01300.13 gi|89255812|ref|YP_513174.1| - 7.9e-24 83.8 0.0 9.7e-24 83.5 0.0 1.0 1 0 0 1 1 1 1 Telomere recombination IspA PF04279.10 gi|89255813|ref|YP_513175.1| - 9.8e-57 191.7 21.2 1.1e-56 191.6 14.7 1.0 1 0 0 1 1 1 1 Intracellular septation protein A DUF4405 PF14358.1 gi|89255813|ref|YP_513175.1| - 0.0014 18.7 1.0 2.3 8.4 0.0 3.5 2 1 1 3 3 3 1 Domain of unknown function (DUF4405) SdpI PF13630.1 gi|89255813|ref|YP_513175.1| - 0.0027 17.3 2.7 0.0027 17.3 1.8 3.0 2 1 1 3 3 3 2 SdpI/YhfL protein family CstA PF02554.9 gi|89255813|ref|YP_513175.1| - 0.02 13.5 6.9 0.023 13.3 4.8 1.2 1 0 0 1 1 1 0 Carbon starvation protein CstA MFS_2 PF13347.1 gi|89255813|ref|YP_513175.1| - 1.9 6.7 18.9 0.12 10.7 5.4 2.0 1 1 1 2 2 2 0 MFS/sugar transport protein TauE PF01925.14 gi|89255813|ref|YP_513175.1| - 3.3 7.1 10.4 0.68 9.3 3.2 1.8 1 1 0 1 1 1 0 Sulfite exporter TauE/SafE MFS_1 PF07690.11 gi|89255813|ref|YP_513175.1| - 7.7 5.1 17.0 0.11 11.2 3.9 2.1 1 1 1 2 2 2 0 Major Facilitator Superfamily DUF2614 PF11023.3 gi|89255814|ref|YP_513176.1| - 0.89 9.3 7.2 1.1 9.0 5.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2614) DUF4131 PF13567.1 gi|89255814|ref|YP_513176.1| - 3.3 7.0 5.5 4 6.8 3.8 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF2207 PF09972.4 gi|89255814|ref|YP_513176.1| - 7.1 5.0 7.7 7.7 4.9 5.3 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Glucokinase PF02685.11 gi|89255815|ref|YP_513177.1| - 3.1e-109 364.6 0.0 3.5e-109 364.4 0.0 1.0 1 0 0 1 1 1 1 Glucokinase ROK PF00480.15 gi|89255815|ref|YP_513177.1| - 0.033 14.0 0.1 0.11 12.3 0.1 1.9 1 1 0 1 1 1 0 ROK family Statherin PF03875.8 gi|89255815|ref|YP_513177.1| - 0.12 12.3 0.2 0.12 12.3 0.1 1.7 2 0 0 2 2 2 0 Statherin Ubie_methyltran PF01209.13 gi|89255816|ref|YP_513178.1| - 3.3e-101 337.2 0.1 4.1e-101 336.9 0.1 1.0 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.1 gi|89255816|ref|YP_513178.1| - 1.4e-21 76.6 0.2 2.9e-21 75.6 0.1 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|89255816|ref|YP_513178.1| - 3.2e-19 69.1 0.0 5.5e-19 68.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|89255816|ref|YP_513178.1| - 3.2e-16 59.4 0.0 4.5e-16 58.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|89255816|ref|YP_513178.1| - 4.7e-16 58.9 0.0 8.3e-16 58.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|89255816|ref|YP_513178.1| - 4.5e-12 46.2 0.0 7.7e-12 45.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|89255816|ref|YP_513178.1| - 2.4e-10 40.9 0.0 4e-10 40.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|89255816|ref|YP_513178.1| - 4.6e-08 33.1 0.0 8.7e-08 32.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|89255816|ref|YP_513178.1| - 2.5e-05 23.7 0.0 4.1e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.14 gi|89255816|ref|YP_513178.1| - 0.00012 21.6 0.0 0.00021 20.9 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) UPF0020 PF01170.13 gi|89255816|ref|YP_513178.1| - 0.0015 18.1 0.0 0.0028 17.2 0.0 1.4 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 MetW PF07021.7 gi|89255816|ref|YP_513178.1| - 0.016 14.6 0.1 0.027 13.8 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW RrnaAD PF00398.15 gi|89255816|ref|YP_513178.1| - 0.029 13.4 0.0 0.041 12.9 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase NNMT_PNMT_TEMT PF01234.12 gi|89255816|ref|YP_513178.1| - 0.068 12.1 0.1 1.1 8.2 0.0 2.1 1 1 1 2 2 2 0 NNMT/PNMT/TEMT family Methyltransf_5 PF01795.14 gi|89255816|ref|YP_513178.1| - 0.1 11.8 0.0 8.5 5.5 0.0 2.3 1 1 1 2 2 2 0 MraW methylase family SCP2 PF02036.12 gi|89255817|ref|YP_513179.1| - 9.8e-05 22.5 0.1 0.00016 21.9 0.0 1.4 1 0 0 1 1 1 1 SCP-2 sterol transfer family FliS PF02561.9 gi|89255817|ref|YP_513179.1| - 1.5 8.6 6.9 0.5 10.2 0.7 2.3 1 1 1 2 2 2 0 Flagellar protein FliS ABC1 PF03109.11 gi|89255818|ref|YP_513180.1| - 2.3e-34 117.9 0.5 4.3e-34 117.0 0.4 1.5 1 0 0 1 1 1 1 ABC1 family APH PF01636.18 gi|89255818|ref|YP_513180.1| - 0.0014 18.4 0.1 0.11 12.1 0.1 2.3 1 1 1 2 2 2 2 Phosphotransferase enzyme family HIT PF01230.18 gi|89255819|ref|YP_513181.1| - 7.8e-27 93.6 0.0 9.5e-27 93.4 0.0 1.0 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.3 gi|89255819|ref|YP_513181.1| - 2.5e-26 92.1 0.0 2.8e-26 92.0 0.0 1.0 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.10 gi|89255819|ref|YP_513181.1| - 0.022 14.4 0.5 0.025 14.2 0.4 1.3 1 1 0 1 1 1 0 Protein similar to CwfJ C-terminus 1 Pribosyltran PF00156.22 gi|89255820|ref|YP_513182.1| - 5.8e-06 26.0 0.2 9.9e-06 25.2 0.1 1.5 1 1 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|89255820|ref|YP_513182.1| - 3.3e-05 23.2 0.0 0.00029 20.1 0.0 2.1 2 0 0 2 2 2 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|89255820|ref|YP_513182.1| - 7e-05 22.2 0.1 0.0001 21.7 0.1 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase Peptidase_C48 PF02902.14 gi|89255820|ref|YP_513182.1| - 0.076 12.6 0.5 0.21 11.2 0.1 1.7 2 0 0 2 2 2 0 Ulp1 protease family, C-terminal catalytic domain Methyltransf_23 PF13489.1 gi|89255821|ref|YP_513183.1| - 3.6e-07 30.0 0.0 5.2e-07 29.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|89255821|ref|YP_513183.1| - 0.00016 22.1 0.1 0.00042 20.7 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|89255821|ref|YP_513183.1| - 0.00016 21.2 0.3 0.00033 20.2 0.1 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|89255821|ref|YP_513183.1| - 0.00035 21.0 0.0 0.00072 19.9 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|89255821|ref|YP_513183.1| - 0.0055 17.2 0.2 0.016 15.8 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Astro_capsid_p PF12226.3 gi|89255821|ref|YP_513183.1| - 0.0066 15.7 0.7 0.012 14.8 0.5 1.4 1 0 0 1 1 1 1 Turkey astrovirus capsid protein ACC_central PF08326.7 gi|89255822|ref|YP_513184.1| - 0.0024 16.1 1.9 0.0026 15.9 1.3 1.1 1 0 0 1 1 1 1 Acetyl-CoA carboxylase, central region DUF3519 PF12033.3 gi|89255822|ref|YP_513184.1| - 0.48 10.6 12.2 1.4 9.0 8.2 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF3519) RNA_pol_Rpb1_1 PF04997.7 gi|89255822|ref|YP_513184.1| - 10 5.2 16.0 7 5.7 10.0 1.4 1 1 0 1 1 1 0 RNA polymerase Rpb1, domain 1 MurB_C PF02873.11 gi|89255823|ref|YP_513185.1| - 1e-25 89.4 0.1 2e-25 88.5 0.1 1.5 1 0 0 1 1 1 1 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain FAD_binding_4 PF01565.18 gi|89255823|ref|YP_513185.1| - 5.4e-15 55.0 0.0 3.3e-14 52.5 0.0 1.9 2 0 0 2 2 2 1 FAD binding domain EPSP_synthase PF00275.15 gi|89255824|ref|YP_513186.1| - 2.5e-62 210.6 0.1 2.8e-62 210.5 0.1 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) MMR_HSR1 PF01926.18 gi|89255825|ref|YP_513187.1| - 1.1e-43 147.8 1.8 4.7e-21 74.9 0.1 2.4 2 0 0 2 2 2 2 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|89255825|ref|YP_513187.1| - 4.4e-30 104.0 0.6 5.8e-14 51.6 0.0 2.2 2 0 0 2 2 2 2 Ferrous iron transport protein B KH_dom-like PF14714.1 gi|89255825|ref|YP_513187.1| - 6.6e-27 93.2 0.5 1.4e-26 92.2 0.0 1.9 2 0 0 2 2 1 1 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal GTP_EFTU PF00009.22 gi|89255825|ref|YP_513187.1| - 1.8e-20 73.2 8.6 1e-11 44.6 1.0 4.7 2 2 0 2 2 2 2 Elongation factor Tu GTP binding domain Miro PF08477.8 gi|89255825|ref|YP_513187.1| - 7e-15 55.5 1.1 1e-06 29.2 0.0 2.6 2 0 0 2 2 2 2 Miro-like protein Dynamin_N PF00350.18 gi|89255825|ref|YP_513187.1| - 7.8e-12 45.3 3.5 0.002 17.9 0.1 4.7 3 1 1 4 4 4 4 Dynamin family AIG1 PF04548.11 gi|89255825|ref|YP_513187.1| - 1.2e-08 34.3 1.0 0.003 16.6 0.0 2.6 2 0 0 2 2 2 2 AIG1 family Ras PF00071.17 gi|89255825|ref|YP_513187.1| - 1.4e-07 31.0 3.8 0.0015 17.9 0.4 2.8 2 1 0 2 2 2 2 Ras family DUF258 PF03193.11 gi|89255825|ref|YP_513187.1| - 5.4e-07 28.9 0.1 0.018 14.2 0.0 2.7 2 1 0 2 2 2 2 Protein of unknown function, DUF258 PduV-EutP PF10662.4 gi|89255825|ref|YP_513187.1| - 1.2e-05 24.7 1.0 0.0021 17.5 0.1 3.3 3 1 0 3 3 3 1 Ethanolamine utilisation - propanediol utilisation SRPRB PF09439.5 gi|89255825|ref|YP_513187.1| - 3.8e-05 22.9 0.2 0.02 14.1 0.0 2.8 3 0 0 3 3 3 1 Signal recognition particle receptor beta subunit AAA_17 PF13207.1 gi|89255825|ref|YP_513187.1| - 9e-05 23.2 0.1 0.071 13.9 0.0 2.9 3 0 0 3 3 3 1 AAA domain ABC_tran PF00005.22 gi|89255825|ref|YP_513187.1| - 0.00013 22.2 0.0 0.1 12.9 0.0 2.5 2 0 0 2 2 2 1 ABC transporter MobB PF03205.9 gi|89255825|ref|YP_513187.1| - 0.00022 20.9 0.2 0.4 10.3 0.0 3.4 3 0 0 3 3 3 1 Molybdopterin guanine dinucleotide synthesis protein B cobW PF02492.14 gi|89255825|ref|YP_513187.1| - 0.00026 20.4 6.4 0.027 13.9 0.1 3.4 2 2 2 4 4 4 2 CobW/HypB/UreG, nucleotide-binding domain AAA_18 PF13238.1 gi|89255825|ref|YP_513187.1| - 0.0011 19.2 0.1 1.5 9.1 0.0 3.1 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|89255825|ref|YP_513187.1| - 0.0025 17.9 0.0 2.3 8.3 0.0 2.9 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|89255825|ref|YP_513187.1| - 0.0034 17.2 0.1 0.27 11.1 0.0 2.6 2 0 0 2 2 2 1 AAA domain Arch_ATPase PF01637.13 gi|89255825|ref|YP_513187.1| - 0.0036 17.0 0.5 0.48 10.0 0.0 2.9 1 1 0 2 2 2 1 Archaeal ATPase AAA_29 PF13555.1 gi|89255825|ref|YP_513187.1| - 0.004 16.6 0.0 3.9 7.0 0.0 2.6 2 0 0 2 2 2 2 P-loop containing region of AAA domain NTPase_1 PF03266.10 gi|89255825|ref|YP_513187.1| - 0.0064 16.2 0.2 2.8 7.6 0.1 3.3 3 0 0 3 3 3 1 NTPase RNA_helicase PF00910.17 gi|89255825|ref|YP_513187.1| - 0.01 15.9 0.0 7.6 6.7 0.0 3.1 2 1 0 2 2 2 0 RNA helicase NB-ARC PF00931.17 gi|89255825|ref|YP_513187.1| - 0.014 14.3 0.0 0.32 9.8 0.0 2.3 2 0 0 2 2 2 0 NB-ARC domain Septin PF00735.13 gi|89255825|ref|YP_513187.1| - 0.03 13.3 0.4 1.4 7.8 0.0 2.9 2 1 1 3 3 3 0 Septin DUF3582 PF12122.3 gi|89255825|ref|YP_513187.1| - 0.12 12.3 1.2 7.3 6.6 0.2 2.8 2 1 0 2 2 2 0 Protein of unknown function (DUF3582) AAA_25 PF13481.1 gi|89255825|ref|YP_513187.1| - 0.12 11.7 0.7 22 4.3 0.0 3.6 5 0 0 5 5 5 0 AAA domain FixG_C PF11614.3 gi|89255826|ref|YP_513188.1| - 0.012 15.7 0.1 0.019 15.0 0.0 1.3 1 0 0 1 1 1 0 IG-like fold at C-terminal of FixG, putative oxidoreductase DUF4352 PF11611.3 gi|89255826|ref|YP_513188.1| - 0.071 13.2 0.1 0.12 12.5 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4352) DDE_Tnp_1_2 PF13586.1 gi|89255827|ref|YP_513189.1| - 8.5e-16 57.9 0.1 2.2e-15 56.5 0.1 1.8 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|89255827|ref|YP_513189.1| - 5.2e-13 49.0 0.9 1.7e-12 47.3 0.6 1.7 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|89255827|ref|YP_513189.1| - 4e-09 36.4 0.1 5.7e-09 35.8 0.1 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF4096 PF13340.1 gi|89255827|ref|YP_513189.1| - 0.00091 19.0 0.0 0.0017 18.1 0.0 1.4 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) DUF2851 PF11013.3 gi|89255827|ref|YP_513189.1| - 0.038 12.7 0.2 0.056 12.1 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2851) DDE_3 PF13358.1 gi|89255828|ref|YP_513190.1| - 1.2e-30 106.2 0.0 2.1e-30 105.3 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.11 gi|89255828|ref|YP_513190.1| - 1.4e-07 31.2 0.2 9.4e-07 28.5 0.1 2.1 2 0 0 2 2 2 1 Transposase DDE_1 PF03184.14 gi|89255828|ref|YP_513190.1| - 8.1e-07 28.3 0.1 1.3e-06 27.7 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_28 PF13518.1 gi|89255828|ref|YP_513190.1| - 0.00051 19.9 0.0 0.0017 18.3 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain rve PF00665.21 gi|89255828|ref|YP_513190.1| - 0.00067 19.7 0.0 0.0012 18.9 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.1 gi|89255828|ref|YP_513190.1| - 0.0075 15.8 0.0 0.027 14.1 0.0 2.0 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.1 gi|89255828|ref|YP_513190.1| - 0.018 15.1 0.0 0.028 14.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix DDE_Tnp_ISAZ013 PF07592.6 gi|89255828|ref|YP_513190.1| - 0.046 12.4 0.5 0.43 9.2 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain UPF0102 PF02021.12 gi|89255829|ref|YP_513191.1| - 1.9e-18 66.1 0.1 2.3e-18 65.9 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0102 Hjc PF01870.13 gi|89255829|ref|YP_513191.1| - 3.6e-05 23.2 0.0 4.1e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) NERD PF08378.6 gi|89255829|ref|YP_513191.1| - 0.00026 21.2 0.0 0.00028 21.1 0.0 1.1 1 0 0 1 1 1 1 Nuclease-related domain DUF234 PF03008.9 gi|89255829|ref|YP_513191.1| - 0.00026 21.0 0.1 0.00038 20.5 0.1 1.4 1 1 0 1 1 1 1 Archaea bacterial proteins of unknown function DUF4143 PF13635.1 gi|89255829|ref|YP_513191.1| - 0.047 13.8 0.0 0.064 13.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4143) Cas_Cas4 PF01930.12 gi|89255829|ref|YP_513191.1| - 0.064 13.1 0.1 0.071 13.0 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function DUF83 BACK PF07707.10 gi|89255829|ref|YP_513191.1| - 0.081 12.7 0.1 0.11 12.2 0.1 1.4 1 1 0 1 1 1 0 BTB And C-terminal Kelch DUF91 PF01939.11 gi|89255829|ref|YP_513191.1| - 0.11 11.6 0.0 0.12 11.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function DUF91 Peptidase_M3 PF01432.15 gi|89255830|ref|YP_513192.1| - 1.1e-125 420.2 2.8 2.2e-125 419.2 1.9 1.5 1 0 0 1 1 1 1 Peptidase family M3 Peptidase_MA_2 PF13485.1 gi|89255830|ref|YP_513192.1| - 0.067 13.2 0.1 0.32 11.0 0.0 2.3 2 1 0 2 2 2 0 Peptidase MA superfamily DUF1212 PF06738.7 gi|89255830|ref|YP_513192.1| - 0.12 11.8 0.2 15 4.9 0.0 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF1212) Peptidase_M50B PF13398.1 gi|89255830|ref|YP_513192.1| - 0.12 11.7 0.0 0.19 11.1 0.0 1.2 1 0 0 1 1 1 0 Peptidase M50B-like DUF498 PF04430.9 gi|89255831|ref|YP_513193.1| - 1.3e-25 89.0 0.0 1.5e-25 88.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF498/DUF598) DUF2914 PF11141.3 gi|89255832|ref|YP_513194.1| - 0.0023 17.3 0.1 0.0037 16.7 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2914) DUF3859 PF12975.2 gi|89255832|ref|YP_513194.1| - 0.048 13.3 0.2 0.063 12.9 0.1 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF3859) LPAM_1 PF08139.7 gi|89255832|ref|YP_513194.1| - 0.51 10.6 3.3 0.82 9.9 2.3 1.3 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site Trypan_glycop_C PF10659.4 gi|89255832|ref|YP_513194.1| - 0.56 10.5 3.9 0.35 11.2 1.3 1.7 1 1 1 2 2 2 0 Trypanosome variant surface glycoprotein C-terminal domain ERM PF00769.14 gi|89255833|ref|YP_513195.1| - 0.0018 17.8 32.5 0.013 15.0 7.1 2.0 1 1 1 2 2 2 2 Ezrin/radixin/moesin family CENP-F_leu_zip PF10473.4 gi|89255833|ref|YP_513195.1| - 0.018 14.9 22.5 0.33 10.8 6.7 2.2 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF948 PF06103.6 gi|89255833|ref|YP_513195.1| - 0.04 13.7 18.7 0.084 12.7 2.9 2.8 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) DUF4305 PF14146.1 gi|89255833|ref|YP_513195.1| - 0.045 13.5 1.9 0.07 12.8 1.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4305) DUF16 PF01519.11 gi|89255833|ref|YP_513195.1| - 0.053 13.7 1.5 0.053 13.7 1.0 2.5 2 1 0 2 2 1 0 Protein of unknown function DUF16 Reticulon PF02453.12 gi|89255833|ref|YP_513195.1| - 0.098 12.2 4.3 0.42 10.1 0.1 2.1 2 0 0 2 2 2 0 Reticulon Syntaxin_2 PF14523.1 gi|89255833|ref|YP_513195.1| - 0.12 12.4 27.4 0.062 13.3 11.0 2.2 1 1 1 2 2 2 0 Syntaxin-like protein EzrA PF06160.7 gi|89255833|ref|YP_513195.1| - 0.21 9.7 29.2 0.59 8.2 4.9 2.1 1 1 1 2 2 2 0 Septation ring formation regulator, EzrA DUF4446 PF14584.1 gi|89255833|ref|YP_513195.1| - 0.26 11.0 19.6 0.89 9.3 3.9 2.4 1 1 0 2 2 2 0 Protein of unknown function (DUF4446) DUF3450 PF11932.3 gi|89255833|ref|YP_513195.1| - 0.33 10.1 36.4 1.4 8.0 9.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) APG6 PF04111.7 gi|89255833|ref|YP_513195.1| - 0.43 9.5 32.8 0.1 11.5 10.0 2.0 1 1 1 2 2 2 0 Autophagy protein Apg6 TMPIT PF07851.8 gi|89255833|ref|YP_513195.1| - 0.73 8.8 27.0 2.4 7.1 6.0 2.1 1 1 1 2 2 2 0 TMPIT-like protein T4SS PF07996.6 gi|89255833|ref|YP_513195.1| - 0.88 9.3 32.1 1.4e+02 2.1 22.2 2.5 1 1 0 1 1 1 0 Type IV secretion system proteins XPG_I_2 PF12813.2 gi|89255833|ref|YP_513195.1| - 0.94 8.9 13.6 0.24 10.8 2.1 2.0 1 1 1 2 2 2 0 XPG domain containing TPR_MLP1_2 PF07926.7 gi|89255833|ref|YP_513195.1| - 0.98 9.1 38.1 0.52 10.0 11.0 2.3 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein Nup54 PF13874.1 gi|89255833|ref|YP_513195.1| - 0.98 9.0 26.2 1.1 8.9 3.1 2.2 1 1 1 2 2 2 0 Nucleoporin complex subunit 54 Reo_sigmaC PF04582.7 gi|89255833|ref|YP_513195.1| - 1 8.4 6.7 2.7 7.0 0.7 2.0 1 1 1 2 2 2 0 Reovirus sigma C capsid protein Peptidase_C6 PF00851.13 gi|89255833|ref|YP_513195.1| - 1 7.8 17.9 0.27 9.8 5.2 2.0 1 1 1 2 2 2 0 Helper component proteinase Macoilin PF09726.4 gi|89255833|ref|YP_513195.1| - 1.1 7.4 30.0 1.9 6.6 20.8 1.4 1 1 0 1 1 1 0 Transmembrane protein Laminin_I PF06008.9 gi|89255833|ref|YP_513195.1| - 1.2 8.3 29.9 1 8.6 7.2 2.0 1 1 1 2 2 2 0 Laminin Domain I DUF2077 PF09850.4 gi|89255833|ref|YP_513195.1| - 1.4 8.3 11.5 0.73 9.2 0.8 2.7 2 1 1 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2077) FemAB PF02388.11 gi|89255833|ref|YP_513195.1| - 1.5 7.4 31.4 0.081 11.6 8.7 2.0 1 1 1 2 2 2 0 FemAB family DUF4337 PF14235.1 gi|89255833|ref|YP_513195.1| - 1.5 8.6 32.9 1.4 8.7 8.4 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4337) Bul1_C PF04426.7 gi|89255833|ref|YP_513195.1| - 1.6 7.8 16.5 2.5 7.2 11.4 1.3 1 0 0 1 1 1 0 Bul1 C terminus DUF3373 PF11853.3 gi|89255833|ref|YP_513195.1| - 1.7 7.0 21.4 3.7 5.9 14.8 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3373) DUF2730 PF10805.3 gi|89255833|ref|YP_513195.1| - 1.9 8.2 10.6 0.49 10.1 1.1 2.9 1 1 2 3 3 3 0 Protein of unknown function (DUF2730) Shisa PF13908.1 gi|89255833|ref|YP_513195.1| - 1.9 8.6 5.4 0.32 11.1 0.1 1.9 1 1 1 2 2 2 0 Wnt and FGF inhibitory regulator IncA PF04156.9 gi|89255833|ref|YP_513195.1| - 2 7.9 30.4 3.9 7.0 21.0 1.5 1 1 0 1 1 1 0 IncA protein Neur_chan_memb PF02932.11 gi|89255833|ref|YP_513195.1| - 2.2 8.1 7.2 3.5 7.4 5.0 1.3 1 0 0 1 1 1 0 Neurotransmitter-gated ion-channel transmembrane region Atg14 PF10186.4 gi|89255833|ref|YP_513195.1| - 2.2 7.1 26.7 3.2 6.6 18.5 1.2 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 GAS PF13851.1 gi|89255833|ref|YP_513195.1| - 2.3 7.3 35.7 4.6 6.3 9.7 2.1 1 1 1 2 2 2 0 Growth-arrest specific micro-tubule binding Tropomyosin_1 PF12718.2 gi|89255833|ref|YP_513195.1| - 2.6 7.8 32.1 60 3.4 21.9 2.2 1 1 0 1 1 1 0 Tropomyosin like Rootletin PF15035.1 gi|89255833|ref|YP_513195.1| - 3.1 7.7 25.7 2.1 8.2 9.3 2.1 1 1 1 2 2 2 0 Ciliary rootlet component, centrosome cohesion Nucleoside_tran PF01733.13 gi|89255833|ref|YP_513195.1| - 3.1 6.8 7.6 0.25 10.4 1.8 1.6 1 1 1 2 2 2 0 Nucleoside transporter Bap31 PF05529.7 gi|89255833|ref|YP_513195.1| - 3.4 7.0 30.6 0.22 10.9 7.5 2.3 1 1 0 2 2 2 0 B-cell receptor-associated protein 31-like DUF1202 PF06717.6 gi|89255833|ref|YP_513195.1| - 3.5 6.8 23.7 4.2 6.5 16.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1202) AAA_13 PF13166.1 gi|89255833|ref|YP_513195.1| - 4.5 5.6 27.7 6.6 5.0 19.2 1.3 1 0 0 1 1 1 0 AAA domain TMF_TATA_bd PF12325.3 gi|89255833|ref|YP_513195.1| - 5.2 6.8 25.5 1.1 9.0 7.8 2.4 1 1 0 2 2 2 0 TATA element modulatory factor 1 TATA binding YkyA PF10368.4 gi|89255833|ref|YP_513195.1| - 5.2 6.3 32.8 14 4.9 22.7 1.7 1 1 0 1 1 1 0 Putative cell-wall binding lipoprotein N_NLPC_P60 PF12912.2 gi|89255833|ref|YP_513195.1| - 6.6 6.8 16.1 0.16 12.0 1.9 2.5 1 1 1 3 3 3 0 NLPC_P60 stabilising domain, N term Ax_dynein_light PF10211.4 gi|89255833|ref|YP_513195.1| - 6.9 6.4 32.0 1.3 8.8 8.6 2.1 1 1 1 2 2 2 0 Axonemal dynein light chain DUF342 PF03961.8 gi|89255833|ref|YP_513195.1| - 9.7 4.4 30.2 0.72 8.1 10.5 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF342) DUF479 PF04336.7 gi|89255833|ref|YP_513195.1| - 9.7 6.3 10.4 3.4 7.8 0.2 3.0 1 1 2 3 3 3 0 Protein of unknown function, DUF479 DUF2232 PF09991.4 gi|89255833|ref|YP_513195.1| - 9.8 5.0 8.7 0.81 8.6 0.6 2.1 1 1 0 2 2 2 0 Predicted membrane protein (DUF2232) LPAM_1 PF08139.7 gi|89255834|ref|YP_513196.1| - 0.0044 17.1 2.0 0.0065 16.6 1.4 1.3 1 0 0 1 1 1 1 Prokaryotic membrane lipoprotein lipid attachment site DUF4367 PF14285.1 gi|89255834|ref|YP_513196.1| - 0.025 13.9 0.4 0.031 13.5 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4367) O-antigen_lig PF13425.1 gi|89255835|ref|YP_513197.1| - 2.6e-11 43.6 10.5 2.6e-11 43.6 7.3 4.2 3 1 1 4 4 4 1 O-antigen ligase like membrane protein Wzy_C PF04932.10 gi|89255835|ref|YP_513197.1| - 5.2e-09 36.0 4.7 5.2e-09 36.0 3.3 4.0 2 2 1 3 3 3 1 O-Antigen ligase Topoisom_bac PF01131.15 gi|89255836|ref|YP_513198.1| - 9.4e-133 442.9 7.2 1.3e-132 442.4 5.0 1.2 1 0 0 1 1 1 1 DNA topoisomerase zf-C4_Topoisom PF01396.14 gi|89255836|ref|YP_513198.1| - 1.2e-46 155.8 36.3 3.1e-17 61.7 3.8 4.4 4 0 0 4 4 4 4 Topoisomerase DNA binding C4 zinc finger Toprim PF01751.17 gi|89255836|ref|YP_513198.1| - 4.9e-24 84.2 1.9 1e-23 83.1 0.3 2.4 3 0 0 3 3 3 1 Toprim domain Toprim_2 PF13155.1 gi|89255836|ref|YP_513198.1| - 0.029 14.6 0.2 0.11 12.8 0.1 2.1 1 0 0 1 1 1 0 Toprim-like Toprim_4 PF13662.1 gi|89255836|ref|YP_513198.1| - 0.034 14.1 0.2 0.1 12.5 0.1 2.0 1 1 0 1 1 1 0 Toprim domain zinc_ribbon_2 PF13240.1 gi|89255836|ref|YP_513198.1| - 0.44 10.0 13.7 11 5.6 0.0 5.1 5 0 0 5 5 5 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|89255836|ref|YP_513198.1| - 0.63 10.0 19.4 3.1 7.8 0.1 4.8 4 1 1 5 5 5 0 Zinc ribbon domain RNA_POL_M_15KD PF02150.11 gi|89255836|ref|YP_513198.1| - 0.65 9.7 21.0 0.85 9.3 0.4 4.6 3 1 0 4 4 4 0 RNA polymerases M/15 Kd subunit zf-RING_3 PF14369.1 gi|89255836|ref|YP_513198.1| - 2.7 8.0 10.7 23 5.0 0.1 4.6 4 0 0 4 4 4 0 zinc-finger DNA_ligase_ZBD PF03119.11 gi|89255836|ref|YP_513198.1| - 4.7 6.9 23.4 0.67 9.7 0.1 4.9 5 0 0 5 5 5 0 NAD-dependent DNA ligase C4 zinc finger domain zf-ribbon_3 PF13248.1 gi|89255836|ref|YP_513198.1| - 5.3 6.3 19.1 5.2 6.4 0.0 4.6 4 1 0 4 4 4 0 zinc-ribbon domain CbiA PF01656.18 gi|89255837|ref|YP_513199.1| - 1.8e-24 86.2 0.0 2.5e-24 85.7 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.6 gi|89255837|ref|YP_513199.1| - 1.2e-14 54.0 0.2 3.9e-07 29.4 0.0 2.1 1 1 1 2 2 2 2 ATPase MipZ AAA_31 PF13614.1 gi|89255837|ref|YP_513199.1| - 1.3e-07 31.6 0.0 0.00037 20.4 0.0 2.3 1 1 1 2 2 2 2 AAA domain YhjQ PF06564.7 gi|89255837|ref|YP_513199.1| - 7.3e-05 22.2 0.0 0.058 12.7 0.0 2.1 1 1 1 2 2 2 2 YhjQ protein SRP54 PF00448.17 gi|89255837|ref|YP_513199.1| - 7.4e-05 22.2 0.0 0.00013 21.5 0.0 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain VirC1 PF07015.6 gi|89255837|ref|YP_513199.1| - 0.00011 21.3 0.0 0.00016 20.8 0.0 1.2 1 0 0 1 1 1 1 VirC1 protein Fer4_NifH PF00142.13 gi|89255837|ref|YP_513199.1| - 0.00084 18.6 0.3 0.0018 17.5 0.0 1.6 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family DUF1442 PF07279.6 gi|89255837|ref|YP_513199.1| - 0.0018 17.3 0.0 0.0024 16.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1442) AAA_10 PF12846.2 gi|89255837|ref|YP_513199.1| - 0.0021 17.5 0.0 0.0033 16.9 0.0 1.4 1 1 0 1 1 1 1 AAA-like domain MobB PF03205.9 gi|89255837|ref|YP_513199.1| - 0.0064 16.2 0.0 0.016 14.9 0.0 1.7 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B ArsA_ATPase PF02374.10 gi|89255837|ref|YP_513199.1| - 0.0069 15.4 0.9 0.048 12.7 0.1 2.4 2 1 1 3 3 3 1 Anion-transporting ATPase APS_kinase PF01583.15 gi|89255837|ref|YP_513199.1| - 0.0077 15.8 0.3 2.2 7.9 0.0 2.9 2 1 1 3 3 3 1 Adenylylsulphate kinase DUF87 PF01935.12 gi|89255837|ref|YP_513199.1| - 0.01 15.6 0.1 0.036 13.8 0.1 2.0 1 1 0 1 1 1 0 Domain of unknown function DUF87 Tautomerase_3 PF14832.1 gi|89255837|ref|YP_513199.1| - 0.011 15.7 0.2 0.019 14.9 0.1 1.4 1 0 0 1 1 1 0 Putative oxalocrotonate tautomerase enzyme LpxK PF02606.9 gi|89255837|ref|YP_513199.1| - 0.018 14.0 0.0 0.031 13.2 0.0 1.4 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase KTI12 PF08433.5 gi|89255837|ref|YP_513199.1| - 0.077 12.1 0.0 0.16 11.1 0.0 1.5 1 0 0 1 1 1 0 Chromatin associated protein KTI12 TK PF00265.13 gi|89255837|ref|YP_513199.1| - 0.083 12.4 0.0 0.15 11.6 0.0 1.4 1 0 0 1 1 1 0 Thymidine kinase ArgK PF03308.11 gi|89255837|ref|YP_513199.1| - 0.083 11.6 0.0 0.22 10.2 0.0 1.6 2 0 0 2 2 2 0 ArgK protein Thymidylate_kin PF02223.12 gi|89255837|ref|YP_513199.1| - 0.11 11.8 0.8 18 4.6 0.0 2.8 2 1 1 3 3 3 0 Thymidylate kinase AAA_19 PF13245.1 gi|89255837|ref|YP_513199.1| - 0.14 11.8 0.0 0.33 10.7 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain KorB PF08535.5 gi|89255838|ref|YP_513200.1| - 2e-27 95.1 1.9 2.2e-27 95.0 0.2 1.9 2 0 0 2 2 2 1 KorB domain ParBc PF02195.13 gi|89255838|ref|YP_513200.1| - 2.5e-20 72.3 0.1 6.8e-20 70.9 0.0 1.8 1 0 0 1 1 1 1 ParB-like nuclease domain HTH_19 PF12844.2 gi|89255838|ref|YP_513200.1| - 0.0036 17.3 0.3 0.019 15.0 0.1 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain GATase PF00117.23 gi|89255839|ref|YP_513201.1| - 3.9e-13 49.2 0.1 5e-13 48.9 0.1 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|89255839|ref|YP_513201.1| - 0.00013 21.5 0.0 0.00021 20.9 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Arteri_env PF01606.11 gi|89255839|ref|YP_513201.1| - 0.069 12.8 0.1 0.14 11.8 0.1 1.4 1 0 0 1 1 1 0 Arterivirus envelope protein Pyr_redox_3 PF13738.1 gi|89255839|ref|YP_513201.1| - 0.1 12.6 0.0 0.74 9.8 0.0 2.0 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Lipase_GDSL PF00657.17 gi|89255840|ref|YP_513202.1| - 1.3e-16 61.1 0.1 1.6e-16 60.8 0.1 1.1 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase Lipase_GDSL_2 PF13472.1 gi|89255840|ref|YP_513202.1| - 2.2e-06 27.9 0.0 3.6e-06 27.2 0.0 1.4 1 1 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family Glyco_hydro_56 PF01630.13 gi|89255840|ref|YP_513202.1| - 0.02 13.5 0.0 0.029 13.0 0.0 1.1 1 0 0 1 1 1 0 Hyaluronidase HD_3 PF13023.1 gi|89255841|ref|YP_513203.1| - 2.1e-20 73.1 0.0 2.3e-20 72.9 0.0 1.0 1 0 0 1 1 1 1 HD domain HD PF01966.17 gi|89255841|ref|YP_513203.1| - 0.00014 21.8 0.0 0.00018 21.5 0.0 1.2 1 0 0 1 1 1 1 HD domain RPAP3_C PF13877.1 gi|89255842|ref|YP_513204.1| - 0.045 13.7 0.0 0.045 13.7 0.0 1.1 1 0 0 1 1 1 0 Potential Monad-binding region of RPAP3 FtsJ PF01728.14 gi|89255843|ref|YP_513205.1| - 6e-53 179.5 0.0 6.8e-53 179.3 0.0 1.0 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_31 PF13847.1 gi|89255843|ref|YP_513205.1| - 0.0016 18.0 1.0 0.022 14.3 0.5 2.5 1 1 1 2 2 2 1 Methyltransferase domain NSP13 PF06460.7 gi|89255843|ref|YP_513205.1| - 0.016 14.1 0.4 0.031 13.1 0.2 1.5 2 0 0 2 2 2 0 Coronavirus NSP13 Methyltransf_23 PF13489.1 gi|89255843|ref|YP_513205.1| - 0.046 13.4 0.0 0.1 12.3 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain LPAM_1 PF08139.7 gi|89255844|ref|YP_513206.1| - 0.064 13.5 4.4 0.12 12.5 3.1 1.4 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site Peptidase_A8 PF01252.13 gi|89255845|ref|YP_513207.1| - 3.8e-46 156.4 8.9 4.5e-46 156.2 6.2 1.0 1 0 0 1 1 1 1 Signal peptidase (SPase) II PMT_2 PF13231.1 gi|89255845|ref|YP_513207.1| - 0.00055 19.8 9.1 0.0081 16.0 3.0 2.4 2 1 0 2 2 2 2 Dolichyl-phosphate-mannose-protein mannosyltransferase FtsX PF02687.16 gi|89255845|ref|YP_513207.1| - 0.021 14.5 0.6 0.021 14.5 0.4 2.6 1 1 2 3 3 3 0 FtsX-like permease family EmrE PF13536.1 gi|89255845|ref|YP_513207.1| - 2.6 8.2 7.5 1.3 9.2 3.3 1.9 2 1 0 2 2 2 0 Multidrug resistance efflux transporter tRNA-synt_1 PF00133.17 gi|89255846|ref|YP_513208.1| - 1.6e-215 716.6 3.2 2.1e-215 716.3 2.2 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|89255846|ref|YP_513208.1| - 2.7e-25 88.9 2.3 5.8e-25 87.8 1.6 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|89255846|ref|YP_513208.1| - 3.2e-22 78.7 6.7 8.7e-11 41.0 0.0 4.1 4 1 0 4 4 4 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|89255846|ref|YP_513208.1| - 4.1e-10 39.2 0.0 1.8e-06 27.3 0.0 2.7 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.1 gi|89255846|ref|YP_513208.1| - 4.9e-08 32.4 0.0 1.1e-07 31.3 0.0 1.6 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1f PF01921.13 gi|89255846|ref|YP_513208.1| - 4e-07 29.0 0.0 1.7e-06 26.9 0.0 1.9 2 0 0 2 2 2 1 tRNA synthetases class I (K) zf-FPG_IleRS PF06827.9 gi|89255846|ref|YP_513208.1| - 6.9e-06 25.5 4.8 6.9e-06 25.5 3.3 2.4 2 0 0 2 2 2 1 Zinc finger found in FPG and IleRS FAD_syn PF06574.7 gi|89255847|ref|YP_513209.1| - 3.1e-50 169.8 0.5 4.5e-50 169.3 0.3 1.2 1 0 0 1 1 1 1 FAD synthetase Flavokinase PF01687.12 gi|89255847|ref|YP_513209.1| - 2.4e-38 130.8 0.4 4.1e-38 130.0 0.3 1.4 1 0 0 1 1 1 1 Riboflavin kinase CTP_transf_2 PF01467.21 gi|89255847|ref|YP_513209.1| - 0.00035 20.6 0.1 0.049 13.6 0.0 2.3 2 0 0 2 2 2 2 Cytidylyltransferase Citrate_ly_lig PF08218.6 gi|89255847|ref|YP_513209.1| - 0.024 14.1 0.0 0.048 13.1 0.0 1.5 1 0 0 1 1 1 0 Citrate lyase ligase C-terminal domain Malic_M PF03949.10 gi|89255848|ref|YP_513210.1| - 1.2e-69 234.7 0.2 1.8e-69 234.1 0.1 1.3 1 0 0 1 1 1 1 Malic enzyme, NAD binding domain malic PF00390.14 gi|89255848|ref|YP_513210.1| - 3.8e-67 225.3 0.0 6.4e-67 224.6 0.0 1.4 1 0 0 1 1 1 1 Malic enzyme, N-terminal domain AlaDh_PNT_C PF01262.16 gi|89255848|ref|YP_513210.1| - 0.015 14.8 1.3 0.034 13.7 0.4 2.1 2 1 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain DUF3573 PF12097.3 gi|89255849|ref|YP_513211.1| - 1.3e-186 619.7 19.8 1.3e-186 619.7 13.8 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF3573) FlxA PF14282.1 gi|89255849|ref|YP_513211.1| - 0.04 13.8 5.1 0.08 12.9 3.6 1.4 1 0 0 1 1 1 0 FlxA-like protein DDE_3 PF13358.1 gi|89255850|ref|YP_513212.1| - 3.6e-30 104.6 0.0 6.5e-30 103.8 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.11 gi|89255850|ref|YP_513212.1| - 1.4e-07 31.1 0.2 9.5e-07 28.5 0.1 2.1 2 0 0 2 2 2 1 Transposase DDE_1 PF03184.14 gi|89255850|ref|YP_513212.1| - 7.2e-07 28.5 0.1 1.1e-06 27.9 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_28 PF13518.1 gi|89255850|ref|YP_513212.1| - 0.00052 19.9 0.0 0.0017 18.3 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain rve PF00665.21 gi|89255850|ref|YP_513212.1| - 0.00067 19.7 0.0 0.0012 18.9 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.1 gi|89255850|ref|YP_513212.1| - 0.0076 15.8 0.0 0.027 14.1 0.0 2.0 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.1 gi|89255850|ref|YP_513212.1| - 0.018 15.1 0.0 0.029 14.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix DDE_Tnp_ISAZ013 PF07592.6 gi|89255850|ref|YP_513212.1| - 0.048 12.3 0.6 0.42 9.2 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain CENP-B_N PF04218.8 gi|89255850|ref|YP_513212.1| - 0.059 12.8 0.0 0.65 9.4 0.0 2.5 3 0 0 3 3 3 0 CENP-B N-terminal DNA-binding domain DDE_Tnp_1_2 PF13586.1 gi|89255851|ref|YP_513213.1| - 1.1e-15 57.5 0.1 2.7e-15 56.2 0.1 1.7 2 0 0 2 2 2 1 Transposase DDE domain Sua5_yciO_yrdC PF01300.13 gi|89255851|ref|YP_513213.1| - 5.1e-13 48.6 0.0 9.2e-13 47.8 0.0 1.4 1 0 0 1 1 1 1 Telomere recombination DDE_Tnp_1 PF01609.16 gi|89255851|ref|YP_513213.1| - 7.1e-13 48.5 1.0 2.3e-12 46.9 0.7 1.7 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|89255851|ref|YP_513213.1| - 4.3e-09 36.3 0.1 7.2e-09 35.5 0.1 1.3 1 0 0 1 1 1 1 Transposase DDE domain DUF4096 PF13340.1 gi|89255851|ref|YP_513213.1| - 0.001 18.8 0.0 0.0019 17.9 0.0 1.5 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) UPF0029 PF01205.14 gi|89255852|ref|YP_513214.1| - 1.8e-35 120.9 0.0 2.7e-35 120.3 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized protein family UPF0029 DUF1949 PF09186.6 gi|89255852|ref|YP_513214.1| - 1.6e-05 24.4 0.0 2.5e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1949) MFS_1 PF07690.11 gi|89255853|ref|YP_513215.1| - 1.2e-50 172.1 52.0 2e-49 168.2 29.5 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|89255853|ref|YP_513215.1| - 0.00014 20.4 37.3 0.0028 16.1 25.0 2.4 1 1 1 2 2 2 1 MFS/sugar transport protein tRNA-synt_1g PF09334.6 gi|89255854|ref|YP_513216.1| - 3e-150 500.2 0.1 4.3e-150 499.7 0.1 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA_bind PF01588.15 gi|89255854|ref|YP_513216.1| - 4.2e-23 80.9 0.0 9e-23 79.9 0.0 1.6 1 0 0 1 1 1 1 Putative tRNA binding domain tRNA-synt_1 PF00133.17 gi|89255854|ref|YP_513216.1| - 1.5e-16 59.5 0.2 5.8e-11 41.1 0.0 3.3 3 1 0 3 3 3 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1e PF01406.14 gi|89255854|ref|YP_513216.1| - 3.8e-10 39.3 0.4 1e-05 24.8 0.0 2.9 3 0 0 3 3 3 2 tRNA synthetases class I (C) catalytic domain Anticodon_1 PF08264.8 gi|89255854|ref|YP_513216.1| - 1e-05 25.3 2.7 1.2e-05 25.1 0.8 1.9 2 0 0 2 2 2 1 Anticodon-binding domain of tRNA tRNA-synt_1f PF01921.13 gi|89255854|ref|YP_513216.1| - 9.5e-05 21.2 0.0 0.00029 19.6 0.0 1.8 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1d PF00750.14 gi|89255854|ref|YP_513216.1| - 0.033 13.0 0.8 10 4.7 0.6 3.2 2 1 1 3 3 3 0 tRNA synthetases class I (R) PI31_Prot_N PF11566.3 gi|89255854|ref|YP_513216.1| - 0.047 13.2 0.7 2.5 7.6 0.0 2.5 2 0 0 2 2 2 0 PI31 proteasome regulator N-terminal FMN_red PF03358.10 gi|89255855|ref|YP_513217.1| - 2.1e-26 92.2 0.0 2.6e-26 91.9 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|89255855|ref|YP_513217.1| - 0.03 13.8 0.0 0.045 13.2 0.0 1.3 1 1 0 1 1 1 0 Flavodoxin-like fold JmjC PF02373.17 gi|89255856|ref|YP_513218.1| - 0.009 16.2 0.0 0.009 16.2 0.0 1.1 1 0 0 1 1 1 1 JmjC domain, hydroxylase Cupin_2 PF07883.6 gi|89255856|ref|YP_513218.1| - 0.037 13.5 0.7 0.096 12.1 0.2 1.8 2 0 0 2 2 2 0 Cupin domain Neur_chan_LBD PF02931.18 gi|89255857|ref|YP_513219.1| - 5.6e-28 97.5 1.3 7.5e-28 97.1 0.9 1.1 1 0 0 1 1 1 1 Neurotransmitter-gated ion-channel ligand binding domain Neur_chan_memb PF02932.11 gi|89255857|ref|YP_513219.1| - 0.29 10.9 3.4 0.45 10.3 2.0 1.5 1 1 0 1 1 1 0 Neurotransmitter-gated ion-channel transmembrane region Peptidase_M50 PF02163.17 gi|89255858|ref|YP_513220.1| - 1.7e-24 85.8 11.7 2.2e-24 85.4 8.1 1.2 1 0 0 1 1 1 1 Peptidase family M50 Ion_trans_N PF08412.5 gi|89255858|ref|YP_513220.1| - 0.069 12.4 0.4 0.069 12.4 0.3 2.6 3 1 0 3 3 3 0 Ion transport protein N-terminal HTH_23 PF13384.1 gi|89255859|ref|YP_513221.1| - 0.00029 20.3 0.0 0.00061 19.3 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_r4_2 PF08281.7 gi|89255859|ref|YP_513221.1| - 0.0013 18.1 0.0 0.0024 17.2 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 Orthopox_A47 PF06334.6 gi|89255859|ref|YP_513221.1| - 0.029 13.4 0.1 0.081 12.0 0.0 1.7 1 1 1 2 2 2 0 Orthopoxvirus A47 protein HTH_28 PF13518.1 gi|89255859|ref|YP_513221.1| - 0.047 13.6 0.0 0.09 12.7 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain MerR_1 PF13411.1 gi|89255859|ref|YP_513221.1| - 0.072 12.8 0.0 0.11 12.2 0.0 1.5 1 0 0 1 1 1 0 MerR HTH family regulatory protein PS_Dcarbxylase PF02666.10 gi|89255860|ref|YP_513222.1| - 3.8e-55 186.3 0.1 4.6e-55 186.0 0.0 1.1 1 0 0 1 1 1 1 Phosphatidylserine decarboxylase DUF1113 PF06541.6 gi|89255860|ref|YP_513222.1| - 0.048 13.4 0.4 0.088 12.5 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1113) NUDIX PF00293.23 gi|89255862|ref|YP_513224.1| - 4.7e-17 61.8 0.0 1e-16 60.7 0.0 1.5 1 0 0 1 1 1 1 NUDIX domain CTP_transf_2 PF01467.21 gi|89255862|ref|YP_513224.1| - 5.5e-08 33.0 0.1 1.9e-07 31.2 0.0 1.9 2 0 0 2 2 2 1 Cytidylyltransferase CAP PF00188.21 gi|89255862|ref|YP_513224.1| - 0.06 13.8 1.7 0.15 12.5 1.0 1.7 2 0 0 2 2 2 0 Cysteine-rich secretory protein family Hexapep PF00132.19 gi|89255863|ref|YP_513225.1| - 2.6e-29 99.4 26.3 3.1e-08 32.7 3.8 5.4 3 1 2 5 5 5 5 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.2 gi|89255863|ref|YP_513225.1| - 7.8e-26 91.0 0.0 1.1e-25 90.5 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain NTP_transferase PF00483.18 gi|89255863|ref|YP_513225.1| - 6.1e-14 51.9 0.1 7.8e-14 51.5 0.1 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep_2 PF14602.1 gi|89255863|ref|YP_513225.1| - 2.2e-12 46.3 34.3 1.4e-05 24.5 4.2 4.8 5 0 0 5 5 5 4 Hexapeptide repeat of succinyl-transferase IspD PF01128.14 gi|89255863|ref|YP_513225.1| - 7.7e-12 45.2 0.4 1.2e-11 44.5 0.3 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CofC PF01983.11 gi|89255863|ref|YP_513225.1| - 3.9e-06 25.9 0.1 7.9e-06 24.9 0.0 1.4 1 0 0 1 1 1 1 Guanylyl transferase CofC like CTP_transf_3 PF02348.14 gi|89255863|ref|YP_513225.1| - 1.7e-05 24.5 0.2 3e-05 23.7 0.1 1.4 1 1 0 1 1 1 1 Cytidylyltransferase DUF2064 PF09837.4 gi|89255863|ref|YP_513225.1| - 0.022 14.3 0.0 0.044 13.3 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2064) SIS PF01380.17 gi|89255864|ref|YP_513226.1| - 1.4e-53 179.9 0.5 6.3e-28 96.9 0.1 3.0 3 0 0 3 3 3 2 SIS domain GATase_6 PF13522.1 gi|89255864|ref|YP_513226.1| - 9.9e-23 80.5 0.0 2e-22 79.5 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|89255864|ref|YP_513226.1| - 2.3e-22 79.2 0.3 4e-16 58.6 0.0 3.0 1 1 0 2 2 2 2 Glutamine amidotransferases class-II GATase_7 PF13537.1 gi|89255864|ref|YP_513226.1| - 2.3e-17 62.8 0.0 1.3e-16 60.4 0.0 2.1 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_4 PF13230.1 gi|89255864|ref|YP_513226.1| - 4.6e-07 28.7 0.1 6.9e-07 28.2 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II DUF2120 PF09893.4 gi|89255864|ref|YP_513226.1| - 0.011 15.7 0.6 0.049 13.5 0.1 2.3 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2120) Acetyltransf_3 PF13302.1 gi|89255865|ref|YP_513227.1| - 5.9e-15 55.6 0.0 7.1e-15 55.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|89255865|ref|YP_513227.1| - 0.00011 22.1 0.2 0.00015 21.7 0.2 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Ribosomal_S21 PF01165.15 gi|89255866|ref|YP_513228.1| - 2.8e-20 71.5 4.8 3.5e-20 71.1 3.3 1.1 1 0 0 1 1 1 1 Ribosomal protein S21 Phage_antitermQ PF06530.7 gi|89255866|ref|YP_513228.1| - 0.095 12.2 0.1 0.11 12.0 0.1 1.2 1 0 0 1 1 1 0 Phage antitermination protein Q CSD PF00313.17 gi|89255867|ref|YP_513229.1| - 3.6e-25 87.5 1.3 4e-25 87.3 0.9 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain OB_RNB PF08206.6 gi|89255867|ref|YP_513229.1| - 6.4e-06 25.5 0.7 8e-06 25.2 0.1 1.4 2 0 0 2 2 2 1 Ribonuclease B OB domain MazG PF03819.12 gi|89255868|ref|YP_513230.1| - 5.6e-10 39.0 1.4 8.3e-10 38.4 1.0 1.2 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain NAS PF03059.11 gi|89255868|ref|YP_513230.1| - 0.0036 16.4 0.4 0.0045 16.1 0.3 1.0 1 0 0 1 1 1 1 Nicotianamine synthase protein dUTPase_2 PF08761.6 gi|89255868|ref|YP_513230.1| - 0.011 15.8 1.2 0.014 15.4 0.9 1.3 1 0 0 1 1 1 0 dUTPase DUF3226 PF11536.3 gi|89255868|ref|YP_513230.1| - 0.028 13.8 1.0 0.028 13.8 0.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3226) Peptidase_M24 PF00557.19 gi|89255869|ref|YP_513231.1| - 2.5e-51 174.2 0.8 2.8e-51 174.0 0.6 1.0 1 0 0 1 1 1 1 Metallopeptidase family M24 KfrA_N PF11740.3 gi|89255870|ref|YP_513232.1| - 0.00029 21.2 0.2 0.00073 19.9 0.1 1.8 1 1 0 1 1 1 1 Plasmid replication region DNA-binding N-term RTTN_N PF14726.1 gi|89255870|ref|YP_513232.1| - 0.021 15.3 1.2 0.047 14.2 0.1 2.3 2 1 0 2 2 2 0 Rotatin, an armadillo repeat protein, centriole functioning V_ATPase_I PF01496.14 gi|89255870|ref|YP_513232.1| - 0.022 12.6 3.9 0.026 12.4 2.7 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF2854 PF11016.3 gi|89255870|ref|YP_513232.1| - 0.026 14.0 1.2 0.055 12.9 0.8 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2854) DUF2057 PF09829.4 gi|89255870|ref|YP_513232.1| - 0.032 13.8 6.3 0.11 12.1 0.7 2.7 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2057) Atg14 PF10186.4 gi|89255870|ref|YP_513232.1| - 0.27 10.1 8.0 0.36 9.7 5.5 1.3 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 DUF972 PF06156.8 gi|89255870|ref|YP_513232.1| - 0.66 10.3 10.8 0.14 12.4 4.3 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF972) TSC22 PF01166.13 gi|89255870|ref|YP_513232.1| - 1.2 9.1 12.3 0.091 12.7 1.5 3.3 2 1 1 3 3 3 0 TSC-22/dip/bun family CemA PF03040.9 gi|89255870|ref|YP_513232.1| - 6.7 6.2 8.3 0.91 9.0 2.5 1.8 2 0 0 2 2 2 0 CemA family GvpG PF05120.7 gi|89255870|ref|YP_513232.1| - 8.7 6.2 7.4 1.1 9.1 1.0 2.4 3 0 0 3 3 3 0 Gas vesicle protein G PLDc_2 PF13091.1 gi|89255871|ref|YP_513233.1| - 1.4e-11 44.2 0.1 2.3e-11 43.5 0.1 1.4 1 0 0 1 1 1 1 PLD-like domain DNA_topoisoIV PF00521.15 gi|89255872|ref|YP_513234.1| - 2.4e-134 448.4 2.9 3e-134 448.0 2.0 1.1 1 0 0 1 1 1 1 DNA gyrase/topoisomerase IV, subunit A DNA_gyraseA_C PF03989.8 gi|89255872|ref|YP_513234.1| - 1.3e-08 33.9 0.9 0.0081 15.4 0.1 4.1 4 0 0 4 4 4 3 DNA gyrase C-terminal domain, beta-propeller PNP_UDP_1 PF01048.15 gi|89255873|ref|YP_513235.1| - 1.2e-47 161.8 0.2 1.3e-47 161.7 0.1 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily BNR_2 PF13088.1 gi|89255875|ref|YP_513237.1| - 2.2e-54 184.5 0.4 2.9e-54 184.2 0.3 1.0 1 0 0 1 1 1 1 BNR repeat-like domain BNR_3 PF13859.1 gi|89255875|ref|YP_513237.1| - 0.00084 18.5 0.0 0.0027 16.8 0.0 1.6 1 1 0 2 2 2 1 BNR repeat-like domain DUF4185 PF13810.1 gi|89255875|ref|YP_513237.1| - 0.0066 15.3 3.3 0.13 11.1 0.1 2.6 2 2 1 3 3 3 2 Domain of unknown function (DUF4185) Glyco_hydro_43 PF04616.9 gi|89255875|ref|YP_513237.1| - 0.014 14.5 1.7 0.17 10.9 0.3 2.4 1 1 1 2 2 2 0 Glycosyl hydrolases family 43 UFD1 PF03152.9 gi|89255875|ref|YP_513237.1| - 0.021 13.9 0.0 0.082 12.0 0.0 1.9 2 0 0 2 2 2 0 Ubiquitin fusion degradation protein UFD1 BNR PF02012.15 gi|89255875|ref|YP_513237.1| - 0.056 13.2 0.3 0.056 13.2 0.2 3.5 3 0 0 3 3 3 0 BNR/Asp-box repeat SLT PF01464.15 gi|89255876|ref|YP_513238.1| - 1e-19 70.1 0.2 3e-19 68.6 0.1 1.8 1 0 0 1 1 1 1 Transglycosylase SLT domain TPR_6 PF13174.1 gi|89255876|ref|YP_513238.1| - 5e-05 23.4 2.8 0.0043 17.4 0.2 4.3 3 0 0 3 3 3 1 Tetratricopeptide repeat SLT_L PF14718.1 gi|89255876|ref|YP_513238.1| - 9.8e-05 22.0 1.0 9.8e-05 22.0 0.7 3.3 3 0 0 3 3 3 1 Soluble lytic murein transglycosylase L domain TPR_19 PF14559.1 gi|89255876|ref|YP_513238.1| - 0.0038 17.5 1.0 0.0038 17.5 0.7 3.8 5 0 0 5 5 5 1 Tetratricopeptide repeat TPR_16 PF13432.1 gi|89255876|ref|YP_513238.1| - 0.016 15.8 1.5 0.84 10.3 0.0 3.3 3 0 0 3 3 3 0 Tetratricopeptide repeat BTAD PF03704.12 gi|89255876|ref|YP_513238.1| - 0.17 12.2 0.0 4.6 7.5 0.0 2.3 2 0 0 2 2 2 0 Bacterial transcriptional activator domain DDE_Tnp_1_2 PF13586.1 gi|89255878|ref|YP_513240.1| - 5e-16 58.6 0.2 1.4e-15 57.2 0.1 1.8 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|89255878|ref|YP_513240.1| - 2.8e-13 49.9 1.0 9.6e-13 48.1 0.7 1.7 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|89255878|ref|YP_513240.1| - 2.4e-09 37.1 0.1 3.3e-09 36.6 0.1 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF4096 PF13340.1 gi|89255878|ref|YP_513240.1| - 0.00051 19.8 0.0 0.0012 18.6 0.0 1.7 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) DUF2254 PF10011.4 gi|89255880|ref|YP_513242.1| - 1.9e-28 98.9 5.0 2.1e-28 98.8 3.5 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2254) Cation_ATPase_C PF00689.16 gi|89255880|ref|YP_513242.1| - 0.078 12.4 3.4 0.094 12.2 2.3 1.1 1 0 0 1 1 1 0 Cation transporting ATPase, C-terminus DUF2254 PF10011.4 gi|89255881|ref|YP_513243.1| - 1.8e-25 89.2 0.0 2e-25 89.0 0.0 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2254) DNA_pol3_alpha PF07733.7 gi|89255882|ref|YP_513244.1| - 4e-172 572.4 0.0 7.4e-172 571.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial DNA polymerase III alpha subunit PHP PF02811.14 gi|89255882|ref|YP_513244.1| - 7.6e-30 103.9 0.2 2.9e-29 102.0 0.0 2.1 2 0 0 2 2 2 1 PHP domain HHH_6 PF14579.1 gi|89255882|ref|YP_513244.1| - 9.7e-25 86.4 0.0 6.4e-24 83.8 0.0 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix motif tRNA_anti-codon PF01336.20 gi|89255882|ref|YP_513244.1| - 0.00028 20.6 0.6 0.00082 19.1 0.2 2.0 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain Pep_deformylase PF01327.16 gi|89255883|ref|YP_513245.1| - 9.6e-42 142.0 0.0 1.2e-41 141.7 0.0 1.1 1 0 0 1 1 1 1 Polypeptide deformylase HD_5 PF13487.1 gi|89255883|ref|YP_513245.1| - 0.0053 16.7 0.2 0.016 15.1 0.0 1.8 2 0 0 2 2 2 1 HD domain MacB_PCD PF12704.2 gi|89255884|ref|YP_513246.1| - 1.3e-29 103.4 2.1 1.3e-29 103.4 1.5 2.9 3 0 0 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|89255884|ref|YP_513246.1| - 4.5e-22 78.0 21.6 7e-22 77.4 11.4 2.3 2 0 0 2 2 2 1 FtsX-like permease family HemY_N PF07219.8 gi|89255884|ref|YP_513246.1| - 0.25 10.8 5.0 0.12 11.9 1.0 2.2 2 0 0 2 2 2 0 HemY protein N-terminus DUF2393 PF09624.5 gi|89255884|ref|YP_513246.1| - 0.88 9.0 5.9 0.59 9.6 0.3 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2393) ABC_tran PF00005.22 gi|89255885|ref|YP_513247.1| - 3.4e-34 118.0 0.0 4.5e-34 117.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|89255885|ref|YP_513247.1| - 4.2e-08 33.5 1.1 3.1e-05 24.1 0.7 2.2 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|89255885|ref|YP_513247.1| - 8.4e-07 28.4 0.8 3e-05 23.3 0.6 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|89255885|ref|YP_513247.1| - 5.3e-06 25.7 1.0 0.082 11.9 0.9 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_18 PF13238.1 gi|89255885|ref|YP_513247.1| - 0.0003 21.0 0.1 0.0034 17.6 0.1 2.2 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|89255885|ref|YP_513247.1| - 0.00095 18.3 0.1 0.0022 17.2 0.1 1.6 2 0 0 2 2 2 1 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|89255885|ref|YP_513247.1| - 0.0019 18.3 1.3 1.4 9.0 0.2 2.2 2 0 0 2 2 2 2 AAA domain AAA_33 PF13671.1 gi|89255885|ref|YP_513247.1| - 0.0028 17.5 0.3 0.031 14.1 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|89255885|ref|YP_513247.1| - 0.0042 16.5 0.2 0.0095 15.4 0.2 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain FtsK_SpoIIIE PF01580.13 gi|89255885|ref|YP_513247.1| - 0.0042 16.5 0.0 0.0073 15.8 0.0 1.3 1 0 0 1 1 1 1 FtsK/SpoIIIE family SbcCD_C PF13558.1 gi|89255885|ref|YP_513247.1| - 0.0057 16.5 0.0 0.084 12.8 0.0 2.4 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_16 PF13191.1 gi|89255885|ref|YP_513247.1| - 0.01 15.8 0.0 0.015 15.3 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_17 PF13207.1 gi|89255885|ref|YP_513247.1| - 0.012 16.4 0.6 0.024 15.4 0.4 1.7 1 1 0 1 1 1 0 AAA domain Arf PF00025.16 gi|89255885|ref|YP_513247.1| - 0.019 14.2 0.3 0.035 13.3 0.2 1.4 1 0 0 1 1 1 0 ADP-ribosylation factor family AAA_23 PF13476.1 gi|89255885|ref|YP_513247.1| - 0.022 15.0 1.2 0.036 14.3 0.8 1.7 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|89255885|ref|YP_513247.1| - 0.024 14.5 0.8 0.04 13.8 0.5 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase cobW PF02492.14 gi|89255885|ref|YP_513247.1| - 0.031 13.7 0.1 0.23 10.9 0.0 2.1 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_19 PF13245.1 gi|89255885|ref|YP_513247.1| - 0.046 13.4 0.0 0.63 9.8 0.1 2.3 2 1 0 2 2 2 0 Part of AAA domain AAA_28 PF13521.1 gi|89255885|ref|YP_513247.1| - 0.067 13.1 0.0 0.28 11.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|89255885|ref|YP_513247.1| - 0.073 12.4 1.2 0.11 11.9 0.7 1.6 1 1 0 1 1 1 0 AAA-like domain Arch_ATPase PF01637.13 gi|89255885|ref|YP_513247.1| - 0.082 12.5 0.2 0.18 11.4 0.1 1.6 2 0 0 2 2 2 0 Archaeal ATPase PduV-EutP PF10662.4 gi|89255885|ref|YP_513247.1| - 0.11 11.9 0.3 0.69 9.3 0.1 2.1 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_24 PF13479.1 gi|89255885|ref|YP_513247.1| - 0.15 11.5 0.5 0.31 10.5 0.4 1.5 1 0 0 1 1 1 0 AAA domain OKR_DC_1 PF01276.15 gi|89255886|ref|YP_513248.1| - 5.6e-168 558.7 0.4 7.6e-168 558.3 0.3 1.2 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, major domain OKR_DC_1_C PF03711.10 gi|89255886|ref|YP_513248.1| - 3.9e-47 159.7 0.4 8.8e-47 158.6 0.3 1.6 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, C-terminal domain OKR_DC_1_N PF03709.10 gi|89255886|ref|YP_513248.1| - 5.2e-14 52.2 0.3 1.1e-13 51.2 0.2 1.6 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, N-terminal domain MerR_1 PF13411.1 gi|89255886|ref|YP_513248.1| - 0.051 13.3 0.2 0.16 11.7 0.1 1.8 2 0 0 2 2 2 0 MerR HTH family regulatory protein GCV_T PF01571.16 gi|89255887|ref|YP_513249.1| - 9.2e-73 244.0 0.1 1.1e-72 243.7 0.1 1.1 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.6 gi|89255887|ref|YP_513249.1| - 1.4e-18 66.6 0.0 2.5e-18 65.8 0.0 1.4 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain TrmE_N PF10396.4 gi|89255887|ref|YP_513249.1| - 0.0006 19.7 0.0 0.1 12.5 0.0 2.6 2 1 0 2 2 2 1 GTP-binding protein TrmE N-terminus POPLD PF08170.7 gi|89255887|ref|YP_513249.1| - 0.0074 16.1 0.0 0.015 15.1 0.0 1.5 1 0 0 1 1 1 1 POPLD (NUC188) domain SoxG PF04268.7 gi|89255887|ref|YP_513249.1| - 0.025 14.4 0.1 6.1 6.6 0.0 2.6 1 1 1 2 2 2 0 Sarcosine oxidase, gamma subunit family VanY PF02557.12 gi|89255887|ref|YP_513249.1| - 0.15 11.9 0.1 0.74 9.6 0.0 2.1 2 1 1 3 3 3 0 D-alanyl-D-alanine carboxypeptidase GCV_H PF01597.14 gi|89255888|ref|YP_513250.1| - 1.8e-45 153.5 0.1 2e-45 153.4 0.1 1.0 1 0 0 1 1 1 1 Glycine cleavage H-protein Biotin_lipoyl PF00364.17 gi|89255888|ref|YP_513250.1| - 4.8e-05 22.9 1.0 0.00039 20.0 0.1 2.1 2 0 0 2 2 2 1 Biotin-requiring enzyme GDC-P PF02347.11 gi|89255889|ref|YP_513251.1| - 2.3e-128 428.5 1.1 2.6e-128 428.3 0.8 1.0 1 0 0 1 1 1 1 Glycine cleavage system P-protein Aminotran_5 PF00266.14 gi|89255889|ref|YP_513251.1| - 3.7e-07 29.2 2.6 1.4e-06 27.3 1.5 2.1 1 1 1 2 2 2 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|89255889|ref|YP_513251.1| - 1.1e-06 27.2 1.2 1.9e-06 26.4 0.1 1.7 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme TIR-like PF10137.4 gi|89255889|ref|YP_513251.1| - 0.012 15.2 0.1 0.073 12.6 0.0 2.2 2 0 0 2 2 2 0 Predicted nucleotide-binding protein containing TIR-like domain DUF4332 PF14229.1 gi|89255889|ref|YP_513251.1| - 0.063 13.2 0.3 0.82 9.6 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4332) B12-binding PF02310.14 gi|89255889|ref|YP_513251.1| - 0.078 12.8 0.3 0.6 9.9 0.0 2.6 2 1 0 2 2 2 0 B12 binding domain GDC-P PF02347.11 gi|89255890|ref|YP_513252.1| - 1.6e-18 66.6 0.0 2.7e-17 62.6 0.0 2.0 2 0 0 2 2 2 1 Glycine cleavage system P-protein Aminotran_5 PF00266.14 gi|89255890|ref|YP_513252.1| - 3.2e-10 39.3 0.0 4.3e-10 38.8 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|89255890|ref|YP_513252.1| - 3.9e-05 22.7 0.0 0.00075 18.5 0.0 2.1 2 0 0 2 2 2 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|89255890|ref|YP_513252.1| - 0.00012 21.3 0.0 0.00016 20.9 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|89255890|ref|YP_513252.1| - 0.095 11.7 0.1 0.36 9.8 0.0 1.8 2 0 0 2 2 2 0 DegT/DnrJ/EryC1/StrS aminotransferase family Shikimate_dh_N PF08501.6 gi|89255891|ref|YP_513253.1| - 1.5e-07 31.4 0.0 3e-07 30.4 0.0 1.5 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain Shikimate_DH PF01488.15 gi|89255891|ref|YP_513253.1| - 1.5e-06 28.3 0.0 2.7e-06 27.5 0.0 1.5 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase AlaDh_PNT_C PF01262.16 gi|89255891|ref|YP_513253.1| - 0.1 12.1 0.4 0.2 11.1 0.3 1.6 1 1 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Alpha-amylase PF00128.19 gi|89255892|ref|YP_513254.1| - 1.1e-24 87.3 0.1 1.5e-12 47.5 0.0 2.7 1 1 0 2 2 2 2 Alpha amylase, catalytic domain CBM_48 PF02922.13 gi|89255892|ref|YP_513254.1| - 3.7e-06 26.8 0.6 1.4e-05 25.0 0.0 2.4 2 0 0 2 2 2 1 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DUF3372 PF11852.3 gi|89255892|ref|YP_513254.1| - 8.1e-05 21.8 0.0 0.00018 20.6 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF3372) Alpha-amylase_C PF02806.13 gi|89255893|ref|YP_513255.1| - 1e-23 83.2 0.1 4.8e-23 81.1 0.0 2.2 2 0 0 2 2 2 1 Alpha amylase, C-terminal all-beta domain Alpha-amylase PF00128.19 gi|89255893|ref|YP_513255.1| - 2.6e-16 59.9 8.5 1.1e-12 47.9 0.3 3.6 2 1 2 4 4 4 2 Alpha amylase, catalytic domain CBM_48 PF02922.13 gi|89255893|ref|YP_513255.1| - 2.6e-16 59.4 0.2 6.1e-16 58.2 0.1 1.7 1 0 0 1 1 1 1 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Sigma70_r1_1 PF03979.9 gi|89255893|ref|YP_513255.1| - 0.12 12.3 0.0 0.29 11.1 0.0 1.5 1 0 0 1 1 1 0 Sigma-70 factor, region 1.1 PGM_PMM_I PF02878.11 gi|89255894|ref|YP_513256.1| - 2.2e-35 121.1 0.1 4.5e-35 120.1 0.1 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_III PF02880.11 gi|89255894|ref|YP_513256.1| - 6.7e-31 106.6 0.0 1.2e-30 105.8 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_II PF02879.11 gi|89255894|ref|YP_513256.1| - 2.6e-13 50.2 0.1 7.2e-13 48.7 0.1 1.8 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.15 gi|89255894|ref|YP_513256.1| - 2.2e-12 46.8 0.0 5.4e-12 45.5 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain SnoaL PF07366.7 gi|89255894|ref|YP_513256.1| - 0.06 12.9 0.1 11 5.6 0.0 3.0 2 1 0 2 2 2 0 SnoaL-like polyketide cyclase NTP_transferase PF00483.18 gi|89255895|ref|YP_513257.1| - 5.7e-67 225.6 0.0 7.1e-67 225.2 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|89255895|ref|YP_513257.1| - 6.2e-08 32.8 0.0 9.6e-08 32.2 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.19 gi|89255895|ref|YP_513257.1| - 0.022 14.2 3.5 0.19 11.3 0.1 2.7 1 1 1 2 2 2 0 Bacterial transferase hexapeptide (six repeats) Glyco_transf_5 PF08323.6 gi|89255896|ref|YP_513258.1| - 1.3e-75 254.0 0.0 5.1e-75 252.1 0.0 1.8 2 0 0 2 2 2 1 Starch synthase catalytic domain Glycos_transf_1 PF00534.15 gi|89255896|ref|YP_513258.1| - 9.5e-19 67.4 0.0 1.9e-18 66.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|89255896|ref|YP_513258.1| - 3.2e-06 27.3 0.0 9.2e-06 25.8 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.1 gi|89255896|ref|YP_513258.1| - 0.00021 21.4 0.0 0.00045 20.3 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Phosphorylase PF00343.15 gi|89255897|ref|YP_513259.1| - 1.1e-206 688.0 16.5 3.2e-206 686.4 11.4 1.6 1 1 0 1 1 1 1 Carbohydrate phosphorylase Glyco_hydro_77 PF02446.12 gi|89255898|ref|YP_513260.1| - 7.8e-126 420.5 10.6 9.6e-126 420.2 7.3 1.0 1 0 0 1 1 1 1 4-alpha-glucanotransferase tRNA-synt_2e PF02091.10 gi|89255899|ref|YP_513261.1| - 2.8e-152 505.6 0.1 3.2e-152 505.5 0.1 1.0 1 0 0 1 1 1 1 Glycyl-tRNA synthetase alpha subunit Mur_ligase_M PF08245.7 gi|89255900|ref|YP_513262.1| - 1.8e-37 129.2 2.1 2e-37 129.0 0.1 1.9 2 0 0 2 2 2 1 Mur ligase middle domain Mur_ligase_C PF02875.16 gi|89255900|ref|YP_513262.1| - 1.5e-22 79.4 0.0 1e-21 76.7 0.0 2.5 2 0 0 2 2 2 1 Mur ligase family, glutamate ligase domain Mur_ligase PF01225.20 gi|89255900|ref|YP_513262.1| - 2.3e-10 40.4 0.0 9.7e-10 38.3 0.0 2.1 3 0 0 3 3 3 1 Mur ligase family, catalytic domain Corona_6B_7B PF03262.8 gi|89255900|ref|YP_513262.1| - 0.007 15.6 0.1 0.014 14.6 0.0 1.5 1 0 0 1 1 1 1 Coronavirus 6B/7B protein DUF4156 PF13698.1 gi|89255901|ref|YP_513263.1| - 2.3e-28 97.9 2.1 2.7e-28 97.6 1.4 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4156) Mur_ligase_M PF08245.7 gi|89255902|ref|YP_513264.1| - 1.4e-33 116.5 0.5 9e-33 113.9 0.0 2.3 2 1 1 3 3 3 1 Mur ligase middle domain Mur_ligase_C PF02875.16 gi|89255902|ref|YP_513264.1| - 6.2e-10 38.9 0.0 2e-09 37.3 0.0 1.9 1 0 0 1 1 1 1 Mur ligase family, glutamate ligase domain Mur_ligase PF01225.20 gi|89255902|ref|YP_513264.1| - 5.3e-09 36.0 0.0 1.1e-08 35.0 0.0 1.5 1 0 0 1 1 1 1 Mur ligase family, catalytic domain HTH_41 PF14502.1 gi|89255902|ref|YP_513264.1| - 0.092 12.3 0.7 1.7 8.3 0.0 3.2 4 0 0 4 4 4 0 Helix-turn-helix domain Semialdhyde_dhC PF02774.13 gi|89255904|ref|YP_513266.1| - 8.8e-46 156.0 0.0 1.2e-45 155.6 0.0 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain Semialdhyde_dh PF01118.19 gi|89255904|ref|YP_513266.1| - 4.7e-13 49.5 0.0 1.4e-12 47.9 0.0 1.8 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain Gp_dh_C PF02800.15 gi|89255904|ref|YP_513266.1| - 9.8e-05 21.8 0.1 0.0002 20.8 0.0 1.5 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain PALP PF00291.20 gi|89255905|ref|YP_513267.1| - 6.1e-22 78.2 0.0 8.2e-22 77.8 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Thr_synth_N PF14821.1 gi|89255905|ref|YP_513267.1| - 1.5e-16 60.1 0.0 2.9e-16 59.2 0.0 1.5 1 0 0 1 1 1 1 Threonine synthase N terminus HTH_22 PF13309.1 gi|89255905|ref|YP_513267.1| - 0.088 12.5 0.0 0.28 10.9 0.0 1.8 1 0 0 1 1 1 0 HTH domain AdoMet_dc PF02675.10 gi|89255906|ref|YP_513268.1| - 3.4e-34 116.9 0.0 6e-34 116.1 0.0 1.4 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase DUF2536 PF10750.4 gi|89255906|ref|YP_513268.1| - 0.075 12.6 0.0 0.16 11.5 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2536) Spermine_synth PF01564.12 gi|89255907|ref|YP_513269.1| - 3.7e-74 248.7 0.5 4.9e-74 248.3 0.4 1.1 1 0 0 1 1 1 1 Spermine/spermidine synthase Methyltransf_18 PF12847.2 gi|89255907|ref|YP_513269.1| - 2.6e-05 24.7 0.0 4.1e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|89255907|ref|YP_513269.1| - 0.00019 20.8 0.0 0.00067 19.0 0.0 1.8 1 1 1 2 2 2 1 Methyltransferase small domain Methyltransf_PK PF05891.7 gi|89255907|ref|YP_513269.1| - 0.00022 20.5 0.0 0.0003 20.1 0.0 1.2 1 0 0 1 1 1 1 AdoMet dependent proline di-methyltransferase Methyltransf_25 PF13649.1 gi|89255907|ref|YP_513269.1| - 0.0015 18.8 0.0 0.003 17.8 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|89255907|ref|YP_513269.1| - 0.0068 15.9 0.0 0.015 14.9 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|89255907|ref|YP_513269.1| - 0.054 13.9 0.0 0.16 12.4 0.0 1.8 1 1 0 1 1 1 0 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|89255907|ref|YP_513269.1| - 0.062 12.6 0.0 0.27 10.6 0.0 2.0 1 1 1 2 2 2 0 Conserved hypothetical protein 95 RrnaAD PF00398.15 gi|89255907|ref|YP_513269.1| - 0.077 12.0 0.0 0.3 10.0 0.0 1.8 2 0 0 2 2 2 0 Ribosomal RNA adenine dimethylase Methyltransf_11 PF08241.7 gi|89255907|ref|YP_513269.1| - 0.13 12.7 0.0 0.3 11.5 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase domain Orn_Arg_deC_N PF02784.11 gi|89255908|ref|YP_513270.1| - 2.3e-31 108.9 0.0 3.3e-31 108.3 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.17 gi|89255908|ref|YP_513270.1| - 2.7e-22 78.6 0.0 4.8e-22 77.8 0.0 1.4 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain PAD_porph PF04371.10 gi|89255909|ref|YP_513271.1| - 3.5e-86 289.2 2.2 4e-86 289.0 1.5 1.0 1 0 0 1 1 1 1 Porphyromonas-type peptidyl-arginine deiminase DDE_3 PF13358.1 gi|89255910|ref|YP_513272.1| - 5.3e-31 107.3 0.0 9e-31 106.5 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.11 gi|89255910|ref|YP_513272.1| - 1.6e-07 31.0 0.2 1.1e-06 28.3 0.1 2.1 2 0 0 2 2 2 1 Transposase DDE_1 PF03184.14 gi|89255910|ref|YP_513272.1| - 6e-07 28.8 0.1 9.5e-07 28.1 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_28 PF13518.1 gi|89255910|ref|YP_513272.1| - 0.00058 19.8 0.0 0.0018 18.2 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain rve PF00665.21 gi|89255910|ref|YP_513272.1| - 0.00072 19.6 0.0 0.0013 18.7 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.1 gi|89255910|ref|YP_513272.1| - 0.0087 15.6 0.0 0.029 14.0 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.1 gi|89255910|ref|YP_513272.1| - 0.02 15.0 0.0 0.032 14.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix DDE_Tnp_ISAZ013 PF07592.6 gi|89255910|ref|YP_513272.1| - 0.041 12.6 0.7 0.32 9.7 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain CENP-B_N PF04218.8 gi|89255910|ref|YP_513272.1| - 0.069 12.5 0.0 0.7 9.3 0.0 2.5 3 0 0 3 3 3 0 CENP-B N-terminal DNA-binding domain CN_hydrolase PF00795.17 gi|89255911|ref|YP_513273.1| - 6.3e-10 38.6 0.0 6.9e-10 38.5 0.0 1.0 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase Metallophos_2 PF12850.2 gi|89255913|ref|YP_513275.1| - 9.9e-10 38.4 0.1 2.6e-09 37.0 0.1 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|89255913|ref|YP_513275.1| - 1.3e-08 34.4 3.3 1.5e-06 27.7 2.3 2.2 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase DNA_pol_E_B PF04042.11 gi|89255913|ref|YP_513275.1| - 0.099 11.8 0.0 3 7.0 0.0 2.3 1 1 0 1 1 1 0 DNA polymerase alpha/epsilon subunit B PDCD2_C PF04194.8 gi|89255913|ref|YP_513275.1| - 0.13 11.8 0.5 0.91 9.1 0.1 2.0 2 0 0 2 2 2 0 Programmed cell death protein 2, C-terminal putative domain Pribosyltran PF00156.22 gi|89255914|ref|YP_513276.1| - 2.5e-15 56.3 0.2 4.1e-15 55.6 0.1 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain OKR_DC_1_N PF03709.10 gi|89255914|ref|YP_513276.1| - 0.069 13.2 0.1 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain PRTase_2 PF15609.1 gi|89255914|ref|YP_513276.1| - 0.12 11.7 0.1 0.16 11.2 0.0 1.2 1 0 0 1 1 1 0 Phosphoribosyl transferase Mur_ligase_M PF08245.7 gi|89255915|ref|YP_513277.1| - 2.4e-25 89.6 0.1 4e-25 88.9 0.1 1.4 1 0 0 1 1 1 1 Mur ligase middle domain Mur_ligase_C PF02875.16 gi|89255915|ref|YP_513277.1| - 1.4e-11 44.2 0.1 5.5e-10 39.1 0.1 2.6 2 0 0 2 2 2 1 Mur ligase family, glutamate ligase domain Mur_ligase PF01225.20 gi|89255915|ref|YP_513277.1| - 3.2e-10 39.9 0.0 7.4e-10 38.7 0.0 1.7 1 0 0 1 1 1 1 Mur ligase family, catalytic domain CbiA PF01656.18 gi|89255915|ref|YP_513277.1| - 0.3 10.4 2.1 7.1 5.9 0.0 2.6 3 0 0 3 3 3 0 CobQ/CobB/MinD/ParA nucleotide binding domain SpoU_methylase PF00588.14 gi|89255916|ref|YP_513278.1| - 5.2e-25 87.9 0.1 1.2e-24 86.7 0.0 1.6 2 0 0 2 2 2 1 SpoU rRNA Methylase family SpoU_sub_bind PF08032.7 gi|89255916|ref|YP_513278.1| - 9.3e-08 32.1 0.1 5.9e-07 29.5 0.2 2.1 2 0 0 2 2 2 1 RNA 2'-O ribose methyltransferase substrate binding AAA_14 PF13173.1 gi|89255916|ref|YP_513278.1| - 0.016 15.0 0.1 0.051 13.4 0.1 1.7 1 1 1 2 2 2 0 AAA domain AFOR_N PF02730.10 gi|89255916|ref|YP_513278.1| - 0.035 13.4 0.3 0.052 12.8 0.2 1.2 1 0 0 1 1 1 0 Aldehyde ferredoxin oxidoreductase, N-terminal domain DDE_3 PF13358.1 gi|89255917|ref|YP_513279.1| - 1.7e-31 108.9 0.0 2.8e-31 108.2 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.11 gi|89255917|ref|YP_513279.1| - 1.5e-07 31.0 0.2 1.1e-06 28.3 0.1 2.1 2 0 0 2 2 2 1 Transposase DDE_1 PF03184.14 gi|89255917|ref|YP_513279.1| - 5.8e-07 28.8 0.1 9.5e-07 28.1 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_28 PF13518.1 gi|89255917|ref|YP_513279.1| - 0.00058 19.8 0.0 0.0018 18.2 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain rve PF00665.21 gi|89255917|ref|YP_513279.1| - 0.00072 19.6 0.0 0.0013 18.7 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.1 gi|89255917|ref|YP_513279.1| - 0.0087 15.6 0.0 0.029 14.0 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.1 gi|89255917|ref|YP_513279.1| - 0.02 15.0 0.0 0.032 14.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix DDE_Tnp_ISAZ013 PF07592.6 gi|89255917|ref|YP_513279.1| - 0.039 12.6 0.6 0.32 9.7 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain BolA PF01722.13 gi|89255919|ref|YP_513281.1| - 2.4e-13 49.8 0.1 2.9e-13 49.5 0.0 1.1 1 0 0 1 1 1 1 BolA-like protein STAS_2 PF13466.1 gi|89255920|ref|YP_513282.1| - 8.3e-08 32.1 0.0 9.3e-08 32.0 0.0 1.0 1 0 0 1 1 1 1 STAS domain STAS PF01740.16 gi|89255920|ref|YP_513282.1| - 5.5e-06 25.7 0.1 6.5e-06 25.5 0.0 1.1 1 0 0 1 1 1 1 STAS domain LytTR PF04397.10 gi|89255920|ref|YP_513282.1| - 0.044 13.8 0.6 0.062 13.3 0.4 1.3 1 0 0 1 1 1 0 LytTr DNA-binding domain DUF2001 PF09393.5 gi|89255920|ref|YP_513282.1| - 0.046 13.4 0.1 0.057 13.1 0.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2001) ABC1 PF03109.11 gi|89255920|ref|YP_513282.1| - 0.095 12.6 0.0 8.9 6.3 0.0 2.1 2 0 0 2 2 2 0 ABC1 family Tol_Tol_Ttg2 PF05494.7 gi|89255921|ref|YP_513283.1| - 1.8e-22 79.6 2.0 2.3e-22 79.3 1.4 1.2 1 0 0 1 1 1 1 Toluene tolerance, Ttg2 tRNA_anti-like PF12869.2 gi|89255921|ref|YP_513283.1| - 0.3 10.5 2.3 1.3 8.5 1.6 2.1 1 1 0 1 1 1 0 tRNA_anti-like MCE PF02470.15 gi|89255922|ref|YP_513284.1| - 1.3e-16 60.3 0.2 2.1e-16 59.7 0.1 1.3 1 0 0 1 1 1 1 mce related protein Permease PF02405.11 gi|89255923|ref|YP_513285.1| - 6.6e-70 234.9 17.5 8.6e-70 234.5 12.1 1.1 1 0 0 1 1 1 1 Permease ABC_tran PF00005.22 gi|89255924|ref|YP_513286.1| - 2.9e-30 105.3 0.1 6.7e-30 104.1 0.0 1.6 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|89255924|ref|YP_513286.1| - 2.3e-08 34.3 5.7 2.4e-07 31.0 0.6 3.0 1 1 1 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|89255924|ref|YP_513286.1| - 0.00015 21.2 0.1 0.00028 20.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|89255924|ref|YP_513286.1| - 0.0004 20.7 7.7 0.0013 19.0 5.4 2.2 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|89255924|ref|YP_513286.1| - 0.00095 18.3 0.0 0.0016 17.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|89255924|ref|YP_513286.1| - 0.0011 19.2 0.1 0.0043 17.3 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|89255924|ref|YP_513286.1| - 0.0015 18.2 0.1 0.0026 17.4 0.0 1.4 1 0 0 1 1 1 1 Part of AAA domain AAA_15 PF13175.1 gi|89255924|ref|YP_513286.1| - 0.0082 15.2 0.3 0.0082 15.2 0.2 2.7 1 1 0 2 2 2 1 AAA ATPase domain AAA_17 PF13207.1 gi|89255924|ref|YP_513286.1| - 0.012 16.4 0.8 0.035 14.9 0.2 2.1 2 1 0 2 2 2 0 AAA domain AAA_3 PF07726.6 gi|89255924|ref|YP_513286.1| - 0.016 14.7 0.0 0.39 10.3 0.0 2.2 1 1 1 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.1 gi|89255924|ref|YP_513286.1| - 0.021 14.7 0.1 0.049 13.5 0.1 1.7 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|89255924|ref|YP_513286.1| - 0.024 14.7 1.1 0.077 13.1 0.1 2.1 2 1 1 3 3 3 0 AAA domain AAA_25 PF13481.1 gi|89255924|ref|YP_513286.1| - 0.03 13.7 0.0 0.053 12.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|89255924|ref|YP_513286.1| - 0.033 14.1 0.1 0.051 13.5 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.1 gi|89255924|ref|YP_513286.1| - 0.036 13.6 0.0 0.051 13.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|89255924|ref|YP_513286.1| - 0.051 13.2 0.1 0.23 11.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) SMC_N PF02463.14 gi|89255924|ref|YP_513286.1| - 0.07 12.3 0.5 0.24 10.5 0.3 1.9 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA PF00004.24 gi|89255924|ref|YP_513286.1| - 0.11 12.7 0.5 0.38 10.9 0.0 2.0 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Miro PF08477.8 gi|89255924|ref|YP_513286.1| - 0.11 12.9 0.2 0.55 10.7 0.0 2.1 2 1 0 2 2 2 0 Miro-like protein cobW PF02492.14 gi|89255924|ref|YP_513286.1| - 0.16 11.3 0.8 0.27 10.6 0.1 1.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain KaiC PF06745.8 gi|89255924|ref|YP_513286.1| - 0.2 10.7 2.1 2.1 7.3 0.3 2.4 2 1 0 2 2 2 0 KaiC MobB PF03205.9 gi|89255924|ref|YP_513286.1| - 0.26 10.9 1.2 3.5 7.3 0.3 2.3 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B MinE PF03776.9 gi|89255925|ref|YP_513287.1| - 8.1e-23 79.7 2.8 1e-22 79.3 1.9 1.1 1 0 0 1 1 1 1 Septum formation topological specificity factor MinE OSCP PF00213.13 gi|89255925|ref|YP_513287.1| - 0.079 12.8 1.0 0.085 12.7 0.7 1.0 1 0 0 1 1 1 0 ATP synthase delta (OSCP) subunit CbiA PF01656.18 gi|89255926|ref|YP_513288.1| - 6.3e-33 113.8 0.6 7.5e-33 113.5 0.4 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|89255926|ref|YP_513288.1| - 4.5e-19 68.9 0.0 2.6e-18 66.4 0.0 1.9 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.10 gi|89255926|ref|YP_513288.1| - 4.1e-10 39.1 0.2 3.9e-09 35.9 0.1 2.2 2 0 0 2 2 2 1 Anion-transporting ATPase MipZ PF09140.6 gi|89255926|ref|YP_513288.1| - 4.1e-10 39.1 0.4 7.5e-10 38.3 0.3 1.4 1 1 0 1 1 1 1 ATPase MipZ YhjQ PF06564.7 gi|89255926|ref|YP_513288.1| - 2.5e-05 23.7 0.0 0.00026 20.4 0.0 2.3 1 1 0 1 1 1 1 YhjQ protein Fer4_NifH PF00142.13 gi|89255926|ref|YP_513288.1| - 2.5e-05 23.5 0.1 0.011 14.8 0.0 2.2 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family SRP54 PF00448.17 gi|89255926|ref|YP_513288.1| - 0.0022 17.4 3.2 0.02 14.3 0.7 2.2 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain ParA PF10609.4 gi|89255926|ref|YP_513288.1| - 0.018 14.8 0.0 0.073 12.9 0.0 2.0 2 0 0 2 2 2 0 ParA/MinD ATPase like Zeta_toxin PF06414.7 gi|89255926|ref|YP_513288.1| - 0.045 12.8 0.1 0.19 10.8 0.0 1.9 2 0 0 2 2 2 0 Zeta toxin MobB PF03205.9 gi|89255926|ref|YP_513288.1| - 0.079 12.6 0.5 0.15 11.7 0.3 1.6 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_25 PF13481.1 gi|89255926|ref|YP_513288.1| - 0.096 12.0 1.0 0.29 10.4 0.7 1.8 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|89255926|ref|YP_513288.1| - 0.099 12.0 1.0 0.21 11.0 0.2 1.7 2 0 0 2 2 2 0 AAA-like domain AAA_30 PF13604.1 gi|89255926|ref|YP_513288.1| - 0.15 11.6 1.5 0.31 10.6 1.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_26 PF13500.1 gi|89255926|ref|YP_513288.1| - 0.18 11.3 1.5 0.89 9.1 1.1 2.3 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|89255926|ref|YP_513288.1| - 0.19 10.5 0.4 0.34 9.7 0.3 1.4 1 0 0 1 1 1 0 NB-ARC domain MinC_C PF03775.11 gi|89255927|ref|YP_513289.1| - 4e-31 106.7 1.8 6.2e-31 106.1 1.2 1.3 1 0 0 1 1 1 1 Septum formation inhibitor MinC, C-terminal domain MinC_N PF05209.8 gi|89255927|ref|YP_513289.1| - 1.2e-09 37.7 0.1 1.9e-09 37.1 0.1 1.3 1 0 0 1 1 1 1 Septum formation inhibitor MinC, N-terminal domain MinE PF03776.9 gi|89255927|ref|YP_513289.1| - 0.053 13.0 0.0 0.14 11.7 0.0 1.7 1 0 0 1 1 1 0 Septum formation topological specificity factor MinE PhaC_N PF07167.8 gi|89255927|ref|YP_513289.1| - 0.12 11.7 0.1 0.18 11.2 0.1 1.2 1 0 0 1 1 1 0 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus Ribosomal_L33 PF00471.15 gi|89255928|ref|YP_513290.1| - 2.2e-21 75.8 3.6 2.4e-21 75.6 2.5 1.0 1 0 0 1 1 1 1 Ribosomal protein L33 Ribosomal_L28 PF00830.14 gi|89255929|ref|YP_513291.1| - 1.9e-29 101.2 1.6 2.2e-29 101.0 1.1 1.1 1 0 0 1 1 1 1 Ribosomal L28 family LPAM_2 PF13627.1 gi|89255930|ref|YP_513292.1| - 1.2e-07 31.2 0.9 1.7e-07 30.6 0.6 1.2 1 0 0 1 1 1 1 Prokaryotic lipoprotein-attachment site YscJ_FliF_C PF08345.6 gi|89255930|ref|YP_513292.1| - 0.16 11.9 8.4 0.18 11.7 5.8 1.1 1 0 0 1 1 1 0 Flagellar M-ring protein C-terminal DEAD PF00270.24 gi|89255931|ref|YP_513293.1| - 5e-21 74.9 3.2 2.9e-20 72.4 0.4 2.3 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|89255931|ref|YP_513293.1| - 1.4e-17 63.3 0.1 8.2e-13 48.0 0.0 2.7 2 0 0 2 2 2 2 Helicase conserved C-terminal domain ResIII PF04851.10 gi|89255931|ref|YP_513293.1| - 1.9e-10 40.8 0.2 1.3e-09 38.1 0.1 2.3 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|89255931|ref|YP_513293.1| - 1e-07 31.0 0.1 1.7e-07 30.3 0.1 1.4 1 0 0 1 1 1 1 SNF2 family N-terminal domain tRNA_anti-codon PF01336.20 gi|89255931|ref|YP_513293.1| - 1.9e-06 27.6 0.0 4.5e-06 26.4 0.0 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain AAA_30 PF13604.1 gi|89255931|ref|YP_513293.1| - 6.9e-06 25.7 2.4 6.5e-05 22.6 0.8 2.4 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|89255931|ref|YP_513293.1| - 1.7e-05 24.9 0.4 0.016 15.3 0.0 3.0 2 1 0 2 2 2 1 AAA domain SecA_DEAD PF07517.9 gi|89255931|ref|YP_513293.1| - 0.00043 19.6 0.0 0.00073 18.9 0.0 1.4 1 1 0 1 1 1 1 SecA DEAD-like domain Helicase_RecD PF05127.9 gi|89255931|ref|YP_513293.1| - 0.00053 19.6 0.1 0.0039 16.8 0.0 2.1 2 0 0 2 2 2 1 Helicase IstB_IS21 PF01695.12 gi|89255931|ref|YP_513293.1| - 0.00055 19.4 0.0 0.0016 17.8 0.0 1.8 2 0 0 2 2 2 1 IstB-like ATP binding protein DUF2791 PF10923.3 gi|89255931|ref|YP_513293.1| - 0.0021 16.7 0.0 0.0046 15.6 0.0 1.5 1 0 0 1 1 1 1 P-loop Domain of unknown function (DUF2791) PhoH PF02562.11 gi|89255931|ref|YP_513293.1| - 0.0047 16.1 1.4 0.079 12.1 0.1 2.7 2 1 1 3 3 3 1 PhoH-like protein AAA_19 PF13245.1 gi|89255931|ref|YP_513293.1| - 0.0072 16.0 0.0 0.018 14.7 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain DUF325 PF03804.8 gi|89255931|ref|YP_513293.1| - 0.028 14.1 0.2 0.68 9.6 0.0 3.0 3 0 0 3 3 3 0 Viral domain of unknown function DUF3240 PF11582.3 gi|89255931|ref|YP_513293.1| - 0.054 13.4 0.6 0.47 10.4 0.0 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF3240) UPF0079 PF02367.12 gi|89255931|ref|YP_513293.1| - 0.07 12.7 0.0 0.53 9.9 0.0 2.4 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 HHH_5 PF14520.1 gi|89255931|ref|YP_513293.1| - 0.11 12.6 0.0 0.49 10.6 0.0 2.2 2 0 0 2 2 1 0 Helix-hairpin-helix domain Fumerase PF05681.9 gi|89255932|ref|YP_513294.1| - 1.1e-98 329.6 0.0 1.9e-98 328.8 0.0 1.4 1 0 0 1 1 1 1 Fumarate hydratase (Fumerase) Fumerase_C PF05683.7 gi|89255932|ref|YP_513294.1| - 5e-85 283.7 0.1 7.3e-85 283.2 0.1 1.2 1 0 0 1 1 1 1 Fumarase C-terminus HTH_Tnp_IS630 PF01710.11 gi|89255933|ref|YP_513295.1| - 2.9e-07 30.1 0.1 6.5e-07 29.0 0.1 1.6 1 0 0 1 1 1 1 Transposase HTH_28 PF13518.1 gi|89255933|ref|YP_513295.1| - 0.00047 20.1 0.0 0.0013 18.6 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain Cas_Cas6 PF01881.11 gi|89255933|ref|YP_513295.1| - 0.0022 18.2 2.1 0.0022 18.2 1.5 2.1 2 1 0 2 2 2 1 CRISPR associated protein Cas6 HTH_23 PF13384.1 gi|89255933|ref|YP_513295.1| - 0.0062 16.1 0.0 0.021 14.4 0.0 2.0 2 0 0 2 2 2 1 Homeodomain-like domain HTH_29 PF13551.1 gi|89255933|ref|YP_513295.1| - 0.012 15.7 0.0 0.022 14.9 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn helix Sigma70_ECF PF07638.6 gi|89255933|ref|YP_513295.1| - 0.035 13.7 0.0 0.27 10.9 0.0 2.0 2 0 0 2 2 2 0 ECF sigma factor UDPG_MGDP_dh_C PF03720.10 gi|89255933|ref|YP_513295.1| - 0.12 12.5 0.3 22 5.2 0.0 2.6 2 1 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain GIY-YIG PF01541.19 gi|89255934|ref|YP_513296.1| - 5.1e-13 49.1 4.0 7.8e-13 48.6 2.8 1.4 1 1 0 1 1 1 1 GIY-YIG catalytic domain T5orf172 PF10544.4 gi|89255934|ref|YP_513296.1| - 0.0057 17.0 0.4 0.011 16.1 0.3 1.5 1 1 0 1 1 1 1 T5orf172 domain MUG113 PF13455.1 gi|89255934|ref|YP_513296.1| - 0.041 14.3 0.0 2.8 8.4 0.0 2.1 1 1 1 2 2 2 0 Meiotically up-regulated gene 113 NTP_transf_2 PF01909.18 gi|89255934|ref|YP_513296.1| - 0.05 13.9 0.2 0.065 13.5 0.1 1.2 1 0 0 1 1 1 0 Nucleotidyltransferase domain ResIII PF04851.10 gi|89255935|ref|YP_513297.1| - 2.5e-14 53.5 3.3 2.5e-14 53.5 2.3 3.2 3 1 1 4 4 4 1 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|89255935|ref|YP_513297.1| - 1.8e-06 27.5 0.3 1.8e-06 27.5 0.2 3.3 3 1 1 4 4 4 1 DEAD/DEAH box helicase SNF2_N PF00176.18 gi|89255935|ref|YP_513297.1| - 0.017 13.9 1.6 0.026 13.3 0.1 2.1 2 1 0 2 2 2 0 SNF2 family N-terminal domain PE-PPE PF08237.6 gi|89255935|ref|YP_513297.1| - 0.12 11.7 0.3 0.83 9.0 0.0 2.2 2 0 0 2 2 2 0 PE-PPE domain Tricorn_C1 PF14684.1 gi|89255935|ref|YP_513297.1| - 1 9.2 5.0 28 4.6 0.4 3.8 2 1 0 2 2 2 0 Tricorn protease C1 domain UDG PF03167.14 gi|89255936|ref|YP_513298.1| - 3.6e-27 94.6 0.0 4.3e-27 94.4 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily FctA PF12892.2 gi|89255937|ref|YP_513299.1| - 0.15 12.8 1.4 0.27 12.0 0.9 1.5 1 1 0 1 1 1 0 T surface-antigen of pili ABC2_membrane_3 PF12698.2 gi|89255937|ref|YP_513299.1| - 0.52 9.2 3.4 0.61 9.0 2.4 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein DNA_topoisoIV PF00521.15 gi|89255940|ref|YP_513302.1| - 4e-153 510.2 0.4 5.5e-153 509.7 0.3 1.2 1 0 0 1 1 1 1 DNA gyrase/topoisomerase IV, subunit A DNA_gyraseA_C PF03989.8 gi|89255940|ref|YP_513302.1| - 3e-65 215.3 13.9 4.4e-17 61.1 0.1 6.7 7 0 0 7 7 7 6 DNA gyrase C-terminal domain, beta-propeller DXP_reductoisom PF02670.11 gi|89255941|ref|YP_513303.1| - 9.5e-42 142.5 1.9 9.5e-42 142.5 1.3 1.7 2 0 0 2 2 2 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase DXP_redisom_C PF08436.7 gi|89255941|ref|YP_513303.1| - 2.3e-40 136.3 0.2 7.3e-40 134.7 0.0 1.9 2 0 0 2 2 2 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal DXPR_C PF13288.1 gi|89255941|ref|YP_513303.1| - 2.6e-34 117.8 0.7 4.5e-34 117.0 0.5 1.4 1 0 0 1 1 1 1 DXP reductoisomerase C-terminal domain Semialdhyde_dh PF01118.19 gi|89255941|ref|YP_513303.1| - 9e-05 22.7 0.3 0.0014 18.9 0.1 2.9 2 1 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain NmrA PF05368.8 gi|89255941|ref|YP_513303.1| - 0.0001 21.6 0.2 0.00018 20.8 0.1 1.4 1 0 0 1 1 1 1 NmrA-like family DapB_N PF01113.15 gi|89255941|ref|YP_513303.1| - 0.0006 19.7 0.9 0.0014 18.5 0.1 2.0 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus NAD_binding_10 PF13460.1 gi|89255941|ref|YP_513303.1| - 0.049 13.6 0.2 0.083 12.8 0.1 1.5 1 0 0 1 1 1 0 NADH(P)-binding Bac_surface_Ag PF01103.18 gi|89255942|ref|YP_513304.1| - 1.6e-61 208.6 22.0 2.5e-61 207.9 15.2 1.3 1 0 0 1 1 1 1 Surface antigen Surf_Ag_VNR PF07244.10 gi|89255942|ref|YP_513304.1| - 1.3e-52 176.0 16.6 2.6e-12 46.9 0.1 5.8 6 0 0 6 6 6 5 Surface antigen variable number repeat POTRA_2 PF08479.6 gi|89255942|ref|YP_513304.1| - 2.2e-07 30.4 0.1 0.016 14.8 0.0 4.6 5 0 0 5 5 5 2 POTRA domain, ShlB-type POTRA_1 PF08478.5 gi|89255942|ref|YP_513304.1| - 0.0077 16.2 0.0 13 5.8 0.0 4.5 5 0 0 5 5 5 1 POTRA domain, FtsQ-type OmpH PF03938.9 gi|89255943|ref|YP_513305.1| - 1.8e-24 86.4 22.7 2.1e-24 86.2 15.7 1.0 1 0 0 1 1 1 1 Outer membrane protein (OmpH-like) Not3 PF04065.10 gi|89255943|ref|YP_513305.1| - 0.011 15.0 12.6 0.014 14.6 8.7 1.2 1 0 0 1 1 1 0 Not1 N-terminal domain, CCR4-Not complex component Virulence_fact PF13769.1 gi|89255943|ref|YP_513305.1| - 0.018 14.8 2.9 0.022 14.6 0.2 2.1 2 0 0 2 2 2 0 Virulence factor WTX PF09422.5 gi|89255943|ref|YP_513305.1| - 0.022 13.7 3.6 0.026 13.5 2.5 1.0 1 0 0 1 1 1 0 WTX protein Y_phosphatase2 PF03162.8 gi|89255943|ref|YP_513305.1| - 0.054 12.8 2.3 0.076 12.3 1.3 1.4 1 1 0 1 1 1 0 Tyrosine phosphatase family Drf_GBD PF06371.8 gi|89255943|ref|YP_513305.1| - 0.062 12.6 10.9 0.098 11.9 7.5 1.3 1 0 0 1 1 1 0 Diaphanous GTPase-binding Domain Allexi_40kDa PF05549.6 gi|89255943|ref|YP_513305.1| - 0.11 11.7 5.6 0.13 11.5 3.9 1.1 1 0 0 1 1 1 0 Allexivirus 40kDa protein DUF342 PF03961.8 gi|89255943|ref|YP_513305.1| - 0.22 9.8 10.3 0.23 9.8 7.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF342) FlxA PF14282.1 gi|89255943|ref|YP_513305.1| - 0.42 10.5 22.8 0.72 9.8 15.8 1.4 1 0 0 1 1 1 0 FlxA-like protein DUF106 PF01956.11 gi|89255943|ref|YP_513305.1| - 0.76 9.2 8.7 1.4 8.4 6.1 1.5 1 1 0 1 1 1 0 Integral membrane protein DUF106 Rho_Binding PF08912.6 gi|89255943|ref|YP_513305.1| - 0.91 9.8 16.6 7.6 6.9 5.5 2.5 1 1 1 2 2 2 0 Rho Binding DUF883 PF05957.8 gi|89255943|ref|YP_513305.1| - 0.95 9.9 4.5 1.7 9.1 3.1 1.4 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF883) Methyltransf_12 PF08242.7 gi|89255943|ref|YP_513305.1| - 2.5 8.6 4.3 8.3 6.9 3.0 1.9 1 1 0 1 1 1 0 Methyltransferase domain DUF4407 PF14362.1 gi|89255943|ref|YP_513305.1| - 3.9 6.3 10.8 5.2 5.9 7.5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) DUF2935 PF11155.3 gi|89255943|ref|YP_513305.1| - 8.8 6.4 12.8 3.3e+02 1.3 8.9 2.2 1 1 0 1 1 1 0 Domain of unknown function (DUF2935) Hexapep PF00132.19 gi|89255944|ref|YP_513306.1| - 1.4e-34 116.0 49.7 3.8e-11 41.9 6.3 6.1 5 1 1 6 6 6 6 Bacterial transferase hexapeptide (six repeats) LpxD PF04613.9 gi|89255944|ref|YP_513306.1| - 9.8e-25 85.8 0.2 2.3e-24 84.6 0.1 1.7 1 0 0 1 1 1 1 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD Hexapep_2 PF14602.1 gi|89255944|ref|YP_513306.1| - 1.2e-13 50.3 48.0 7.2e-06 25.4 6.2 5.9 3 2 1 5 5 5 5 Hexapeptide repeat of succinyl-transferase S1-like PF14444.1 gi|89255944|ref|YP_513306.1| - 0.055 13.1 0.2 0.35 10.6 0.1 2.3 2 0 0 2 2 2 0 S1-like FabA PF07977.8 gi|89255945|ref|YP_513307.1| - 9.3e-36 122.3 0.3 1.5e-35 121.7 0.2 1.3 1 1 0 1 1 1 1 FabA-like domain 4HBT PF03061.17 gi|89255945|ref|YP_513307.1| - 0.017 15.2 0.4 0.028 14.5 0.0 1.5 2 0 0 2 2 2 0 Thioesterase superfamily PS-DH PF14765.1 gi|89255945|ref|YP_513307.1| - 0.027 13.6 0.5 0.7 9.0 0.1 2.0 1 1 1 2 2 2 0 Polyketide synthase dehydratase MaoC_dehydratas PF01575.14 gi|89255945|ref|YP_513307.1| - 0.064 12.6 0.2 0.1 11.9 0.1 1.4 1 0 0 1 1 1 0 MaoC like domain Hexapep PF00132.19 gi|89255946|ref|YP_513308.1| - 1.8e-23 80.9 31.1 4.4e-08 32.2 1.9 5.7 3 2 2 6 6 6 6 Bacterial transferase hexapeptide (six repeats) Acetyltransf_11 PF13720.1 gi|89255946|ref|YP_513308.1| - 4.2e-22 78.1 0.0 6.4e-22 77.5 0.0 1.3 1 0 0 1 1 1 1 Udp N-acetylglucosamine O-acyltransferase; Domain 2 Hexapep_2 PF14602.1 gi|89255946|ref|YP_513308.1| - 0.00012 21.5 2.4 0.00012 21.5 1.6 5.1 6 2 0 6 6 6 1 Hexapeptide repeat of succinyl-transferase LpxB PF02684.10 gi|89255947|ref|YP_513309.1| - 2.5e-102 342.3 0.2 3e-102 342.0 0.2 1.0 1 0 0 1 1 1 1 Lipid-A-disaccharide synthetase ZipA_C PF04354.8 gi|89255948|ref|YP_513310.1| - 3.6e-07 29.7 0.0 5.1e-07 29.2 0.0 1.2 1 0 0 1 1 1 1 ZipA, C-terminal FtsZ-binding domain DUF3365 PF11845.3 gi|89255948|ref|YP_513310.1| - 0.095 12.5 0.1 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3365) PPK2 PF03976.9 gi|89255950|ref|YP_513312.1| - 1.1e-103 345.3 4.3 1.4e-103 345.1 3.0 1.0 1 0 0 1 1 1 1 Polyphosphate kinase 2 (PPK2) IF3_C PF00707.17 gi|89255950|ref|YP_513312.1| - 0.029 14.1 0.3 0.058 13.1 0.2 1.4 1 0 0 1 1 1 0 Translation initiation factor IF-3, C-terminal domain Pribosyltran PF00156.22 gi|89255950|ref|YP_513312.1| - 0.082 12.6 0.0 0.24 11.1 0.0 1.7 2 0 0 2 2 2 0 Phosphoribosyl transferase domain CDP-OH_P_transf PF01066.16 gi|89255951|ref|YP_513313.1| - 7.4e-07 29.4 26.6 1.4e-05 25.2 15.9 2.8 1 1 0 1 1 1 1 CDP-alcohol phosphatidyltransferase VirB8 PF04335.8 gi|89255951|ref|YP_513313.1| - 0.6 9.6 4.9 0.21 11.1 0.2 2.0 2 0 0 2 2 2 0 VirB8 protein Claudin_2 PF13903.1 gi|89255951|ref|YP_513313.1| - 0.89 9.2 11.4 1.2 8.7 2.3 2.3 2 0 0 2 2 2 0 PMP-22/EMP/MP20/Claudin tight junction polyprenyl_synt PF00348.12 gi|89255952|ref|YP_513314.1| - 6.5e-71 238.2 2.2 7.8e-71 237.9 1.5 1.0 1 0 0 1 1 1 1 Polyprenyl synthetase Glycos_transf_N PF04413.11 gi|89255953|ref|YP_513315.1| - 1.3e-61 207.0 0.0 2.9e-61 205.8 0.0 1.5 2 0 0 2 2 2 1 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) Glycos_transf_1 PF00534.15 gi|89255953|ref|YP_513315.1| - 5.1e-08 32.5 0.1 1.1e-07 31.4 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Clathrin_bdg PF15045.1 gi|89255953|ref|YP_513315.1| - 0.034 13.6 0.0 0.073 12.5 0.0 1.5 1 0 0 1 1 1 0 Clathrin-binding box of Aftiphilin, vesicle trafficking Ham1p_like PF01725.11 gi|89255954|ref|YP_513316.1| - 1.1e-64 217.2 0.0 1.2e-64 217.1 0.0 1.0 1 0 0 1 1 1 1 Ham1 family P5CR_dimer PF14748.1 gi|89255955|ref|YP_513317.1| - 2.2e-33 114.4 0.6 4.9e-33 113.3 0.2 1.7 2 0 0 2 2 2 1 Pyrroline-5-carboxylate reductase dimerisation F420_oxidored PF03807.12 gi|89255955|ref|YP_513317.1| - 6.9e-18 64.8 1.2 3.8e-17 62.5 0.1 2.5 3 0 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|89255955|ref|YP_513317.1| - 6.4e-06 26.0 0.2 1.6e-05 24.8 0.2 1.7 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|89255955|ref|YP_513317.1| - 1.5e-05 24.7 4.5 6.2e-05 22.7 1.2 2.8 3 1 0 3 3 3 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Shikimate_DH PF01488.15 gi|89255955|ref|YP_513317.1| - 4.8e-05 23.4 2.1 0.00013 22.1 0.2 2.4 2 1 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase PDH PF02153.12 gi|89255955|ref|YP_513317.1| - 0.00065 18.6 0.5 0.0015 17.4 0.4 1.7 1 1 0 1 1 1 1 Prephenate dehydrogenase GFO_IDH_MocA PF01408.17 gi|89255955|ref|YP_513317.1| - 0.024 15.1 0.1 0.09 13.2 0.0 2.0 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold UDPG_MGDP_dh_N PF03721.9 gi|89255955|ref|YP_513317.1| - 0.072 12.4 2.8 0.095 12.0 0.7 2.2 2 1 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Response_reg PF00072.19 gi|89255956|ref|YP_513318.1| - 3.9e-26 91.2 0.1 7.1e-26 90.4 0.0 1.4 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.23 gi|89255956|ref|YP_513318.1| - 2.2e-22 78.7 0.0 4e-22 77.9 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal OKR_DC_1_N PF03709.10 gi|89255956|ref|YP_513318.1| - 0.015 15.3 0.0 0.03 14.3 0.0 1.5 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain Trp_syntA PF00290.15 gi|89255956|ref|YP_513318.1| - 0.029 12.9 0.0 0.053 12.0 0.0 1.4 1 0 0 1 1 1 0 Tryptophan synthase alpha chain KCNQ_channel PF03520.9 gi|89255956|ref|YP_513318.1| - 0.081 12.2 0.2 3.4 6.9 0.0 2.2 2 0 0 2 2 2 0 KCNQ voltage-gated potassium channel GerE PF00196.14 gi|89255956|ref|YP_513318.1| - 0.096 12.0 0.1 0.24 10.7 0.1 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family Peptidase_S24 PF00717.18 gi|89255957|ref|YP_513319.1| - 1.9e-20 72.2 0.2 3.5e-20 71.4 0.1 1.4 1 0 0 1 1 1 1 Peptidase S24-like Peptidase_S26 PF10502.4 gi|89255957|ref|YP_513319.1| - 4.7e-12 45.5 0.0 7e-07 28.8 0.0 2.4 1 1 1 2 2 2 2 Signal peptidase, peptidase S26 Ribonucleas_3_3 PF14622.1 gi|89255958|ref|YP_513320.1| - 7e-33 113.3 0.1 1.4e-32 112.3 0.1 1.5 1 0 0 1 1 1 1 Ribonuclease-III-like Ribonuclease_3 PF00636.21 gi|89255958|ref|YP_513320.1| - 1.7e-23 83.2 1.4 9.3e-23 80.8 0.1 2.3 2 1 0 2 2 2 1 Ribonuclease III domain dsrm PF00035.20 gi|89255958|ref|YP_513320.1| - 1e-09 38.7 0.1 1.8e-09 38.0 0.1 1.4 1 0 0 1 1 1 1 Double-stranded RNA binding motif DND1_DSRM PF14709.1 gi|89255958|ref|YP_513320.1| - 0.00056 20.1 0.1 0.0018 18.4 0.1 1.8 1 1 0 1 1 1 1 double strand RNA binding domain from DEAD END PROTEIN 1 TruB_N PF01509.13 gi|89255959|ref|YP_513321.1| - 1.2e-60 204.0 0.0 1.7e-60 203.4 0.0 1.2 1 0 0 1 1 1 1 TruB family pseudouridylate synthase (N terminal domain) TruB-C_2 PF09157.6 gi|89255959|ref|YP_513321.1| - 0.098 12.5 0.0 0.31 10.9 0.0 1.8 2 0 0 2 2 2 0 Pseudouridine synthase II TruB, C-terminal RNB PF00773.14 gi|89255960|ref|YP_513322.1| - 3.7e-105 351.8 2.4 5.3e-105 351.2 1.7 1.2 1 0 0 1 1 1 1 RNB domain S1 PF00575.18 gi|89255960|ref|YP_513322.1| - 5.2e-08 32.8 0.9 1e-05 25.4 0.1 2.8 2 0 0 2 2 2 2 S1 RNA binding domain Ras PF00071.17 gi|89255960|ref|YP_513322.1| - 0.03 13.7 0.1 0.094 12.1 0.0 1.8 1 0 0 1 1 1 0 Ras family OB_RNB PF08206.6 gi|89255960|ref|YP_513322.1| - 0.096 12.1 0.5 0.47 9.9 0.2 2.3 2 0 0 2 2 2 0 Ribonuclease B OB domain FA_desaturase PF00487.19 gi|89255961|ref|YP_513323.1| - 5.2e-10 39.1 16.4 6.8e-10 38.8 11.4 1.1 1 0 0 1 1 1 1 Fatty acid desaturase adh_short PF00106.20 gi|89255962|ref|YP_513324.1| - 6.1e-18 65.2 0.0 8.4e-18 64.8 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|89255962|ref|YP_513324.1| - 3.8e-07 29.9 0.0 6e-07 29.2 0.0 1.2 1 0 0 1 1 1 1 KR domain Shikimate_DH PF01488.15 gi|89255962|ref|YP_513324.1| - 0.00029 20.9 0.1 0.00062 19.8 0.0 1.6 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase Epimerase PF01370.16 gi|89255962|ref|YP_513324.1| - 0.00042 19.8 0.0 0.0013 18.1 0.0 1.7 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family DUF1776 PF08643.5 gi|89255962|ref|YP_513324.1| - 0.0013 17.9 0.5 0.0014 17.7 0.3 1.2 1 0 0 1 1 1 1 Fungal family of unknown function (DUF1776) GIDE PF12483.3 gi|89255962|ref|YP_513324.1| - 0.039 13.2 0.0 0.061 12.6 0.0 1.3 1 0 0 1 1 1 0 E3 Ubiquitin ligase Polysacc_synt_2 PF02719.10 gi|89255962|ref|YP_513324.1| - 0.069 12.0 0.0 0.093 11.6 0.0 1.2 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein DUF3833 PF12915.2 gi|89255963|ref|YP_513325.1| - 5.4e-61 204.6 0.8 6.6e-61 204.3 0.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3833) Chalcone PF02431.10 gi|89255964|ref|YP_513326.1| - 0.007 15.7 0.0 0.026 13.9 0.0 1.7 1 1 1 2 2 2 1 Chalcone-flavanone isomerase Condensin2nSMC PF12422.3 gi|89255964|ref|YP_513326.1| - 0.08 12.6 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 Condensin II non structural maintenance of chromosomes subunit DUF903 PF06004.7 gi|89255964|ref|YP_513326.1| - 0.22 11.0 4.3 0.12 11.9 0.8 2.0 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF903) CMAS PF02353.15 gi|89255965|ref|YP_513327.1| - 9e-75 251.2 2.4 1.1e-74 250.9 1.7 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_23 PF13489.1 gi|89255965|ref|YP_513327.1| - 2e-11 43.8 0.0 3.6e-11 43.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|89255965|ref|YP_513327.1| - 7.5e-08 32.7 0.0 1.6e-07 31.7 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|89255965|ref|YP_513327.1| - 2.5e-06 27.8 0.0 8e-06 26.2 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|89255965|ref|YP_513327.1| - 4.8e-05 23.8 0.0 0.0001 22.8 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|89255965|ref|YP_513327.1| - 0.00037 20.1 0.1 0.00068 19.2 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|89255965|ref|YP_513327.1| - 0.00048 19.5 0.0 0.00082 18.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.1 gi|89255965|ref|YP_513327.1| - 0.0016 18.7 0.0 0.0032 17.8 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|89255965|ref|YP_513327.1| - 0.016 15.2 0.0 0.029 14.3 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain UPF0047 PF01894.12 gi|89255965|ref|YP_513327.1| - 0.097 12.4 0.0 0.16 11.7 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised protein family UPF0047 DDE_Tnp_1_2 PF13586.1 gi|89255966|ref|YP_513328.1| - 4.8e-16 58.7 0.2 1.4e-15 57.2 0.1 1.8 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|89255966|ref|YP_513328.1| - 2.6e-13 49.9 1.0 9.1e-13 48.2 0.7 1.7 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|89255966|ref|YP_513328.1| - 2.3e-09 37.2 0.1 3.1e-09 36.7 0.1 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF4096 PF13340.1 gi|89255966|ref|YP_513328.1| - 0.00061 19.6 0.0 0.0012 18.6 0.0 1.5 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) DUF236 PF03057.9 gi|89255967|ref|YP_513329.1| - 0.001 19.0 2.8 0.0027 17.6 1.8 1.7 1 1 0 1 1 1 1 Protein of unknown function SH3_3 PF08239.6 gi|89255967|ref|YP_513329.1| - 0.0032 17.6 0.1 0.01 16.0 0.1 1.8 1 0 0 1 1 1 1 Bacterial SH3 domain Taxilin PF09728.4 gi|89255967|ref|YP_513329.1| - 0.0053 15.8 4.0 0.0068 15.5 2.8 1.2 1 0 0 1 1 1 1 Myosin-like coiled-coil protein AIP3 PF03915.8 gi|89255967|ref|YP_513329.1| - 0.0053 15.7 3.5 0.0063 15.4 2.4 1.1 1 0 0 1 1 1 1 Actin interacting protein 3 muHD PF10291.4 gi|89255967|ref|YP_513329.1| - 0.02 14.1 0.2 0.025 13.7 0.1 1.2 1 0 0 1 1 1 0 Muniscin C-terminal mu homology domain Lumazine_bd PF12870.2 gi|89255967|ref|YP_513329.1| - 0.026 14.5 4.9 0.058 13.4 3.4 1.7 1 1 0 1 1 1 0 Lumazine-binding domain Fasciclin PF02469.17 gi|89255967|ref|YP_513329.1| - 0.04 13.9 1.9 0.06 13.3 1.3 1.2 1 0 0 1 1 1 0 Fasciclin domain SH3_4 PF06347.8 gi|89255967|ref|YP_513329.1| - 0.048 13.2 1.1 0.23 11.0 0.8 2.1 1 1 0 1 1 1 0 Bacterial SH3 domain Remorin_C PF03763.8 gi|89255967|ref|YP_513329.1| - 0.077 12.5 2.4 0.1 12.1 1.7 1.2 1 0 0 1 1 1 0 Remorin, C-terminal region DUF3154 PF11351.3 gi|89255967|ref|YP_513329.1| - 0.11 12.1 1.4 0.16 11.7 1.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3154) DUF4131 PF13567.1 gi|89255968|ref|YP_513330.1| - 0.17 11.2 9.1 0.02 14.3 3.0 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) SdpI PF13630.1 gi|89255968|ref|YP_513330.1| - 6.8 6.4 16.7 2.8 7.6 1.4 2.2 2 0 0 2 2 2 0 SdpI/YhfL protein family DUF3897 PF13036.1 gi|89255969|ref|YP_513331.1| - 1.1e-49 168.5 4.4 1.2e-49 168.3 3.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3897) DUF3280 PF11684.3 gi|89255969|ref|YP_513331.1| - 0.0037 17.4 0.2 0.0098 16.0 0.1 1.8 1 1 0 1 1 1 1 Protein of unknown function (DUF2380) CsgG PF03783.9 gi|89255969|ref|YP_513331.1| - 0.0038 16.3 0.2 0.0071 15.4 0.2 1.6 1 1 0 1 1 1 1 Curli production assembly/transport component CsgG RyR PF02026.11 gi|89255969|ref|YP_513331.1| - 0.057 13.4 0.0 0.1 12.6 0.0 1.4 1 0 0 1 1 1 0 RyR domain RusA PF05866.6 gi|89255969|ref|YP_513331.1| - 0.11 12.9 0.5 0.19 12.1 0.3 1.5 1 1 0 1 1 1 0 Endodeoxyribonuclease RusA CsgG PF03783.9 gi|89255971|ref|YP_513333.1| - 9.2e-08 31.4 1.2 1.5e-07 30.6 0.8 1.4 1 1 0 1 1 1 1 Curli production assembly/transport component CsgG DUF3897 PF13036.1 gi|89255971|ref|YP_513333.1| - 0.00043 19.9 1.8 0.00097 18.7 1.3 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF3897) TMEM52 PF14979.1 gi|89255972|ref|YP_513334.1| - 0.012 15.4 0.0 0.025 14.4 0.0 1.5 1 0 0 1 1 1 0 Transmembrane 52 DDE_Tnp_1_2 PF13586.1 gi|89255973|ref|YP_513335.1| - 4.8e-16 58.7 0.2 1.4e-15 57.2 0.1 1.8 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|89255973|ref|YP_513335.1| - 2.6e-13 49.9 1.0 9.1e-13 48.2 0.7 1.7 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|89255973|ref|YP_513335.1| - 2.2e-09 37.2 0.1 3.1e-09 36.7 0.1 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF4096 PF13340.1 gi|89255973|ref|YP_513335.1| - 0.00061 19.5 0.0 0.0012 18.6 0.0 1.5 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) Amidinotransf PF02274.12 gi|89255974|ref|YP_513336.1| - 5.9e-45 153.5 0.0 6.6e-45 153.3 0.0 1.0 1 0 0 1 1 1 1 Amidinotransferase Amidinotransf PF02274.12 gi|89255975|ref|YP_513337.1| - 9.4e-14 51.1 0.1 1e-13 51.0 0.0 1.0 1 0 0 1 1 1 1 Amidinotransferase OCD_Mu_crystall PF02423.10 gi|89255976|ref|YP_513338.1| - 3.9e-85 285.3 0.0 4.4e-85 285.2 0.0 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family UDPG_MGDP_dh_C PF03720.10 gi|89255976|ref|YP_513338.1| - 0.00029 20.9 0.5 0.0033 17.5 0.2 2.6 2 1 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Shikimate_DH PF01488.15 gi|89255976|ref|YP_513338.1| - 0.0035 17.4 0.0 0.0075 16.3 0.0 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NAD_binding_2 PF03446.10 gi|89255976|ref|YP_513338.1| - 0.0051 16.6 0.0 0.0083 15.9 0.0 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|89255976|ref|YP_513338.1| - 0.015 15.6 0.1 0.057 13.8 0.0 1.9 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent THF_DHG_CYH_C PF02882.14 gi|89255976|ref|YP_513338.1| - 0.086 11.9 0.1 0.14 11.2 0.1 1.4 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NAPRTase PF04095.11 gi|89255977|ref|YP_513339.1| - 2.2e-57 194.1 0.1 2.8e-57 193.8 0.0 1.1 1 0 0 1 1 1 1 Nicotinate phosphoribosyltransferase (NAPRTase) family DUF465 PF04325.8 gi|89255978|ref|YP_513340.1| - 2.3e-12 46.3 4.1 2.3e-12 46.3 2.8 1.7 1 1 0 2 2 2 1 Protein of unknown function (DUF465) CCDC144C PF14915.1 gi|89255978|ref|YP_513340.1| - 0.01 14.8 0.9 0.011 14.6 0.6 1.2 1 0 0 1 1 1 1 CCDC144C protein coiled-coil region Staphylokinase PF02821.11 gi|89255978|ref|YP_513340.1| - 0.029 14.1 0.8 0.031 14.0 0.6 1.1 1 0 0 1 1 1 0 Staphylokinase/Streptokinase family RNR_N PF08343.5 gi|89255978|ref|YP_513340.1| - 0.26 11.1 2.0 1.1 9.0 1.4 1.7 1 1 1 2 2 2 0 Ribonucleotide reductase N-terminal IATP PF04568.7 gi|89255978|ref|YP_513340.1| - 1.2 9.2 4.6 1.5 8.8 0.4 2.0 2 0 0 2 2 2 0 Mitochondrial ATPase inhibitor, IATP Sugar_tr PF00083.19 gi|89255979|ref|YP_513341.1| - 1.4e-66 224.9 46.4 1.6e-66 224.7 32.1 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.11 gi|89255979|ref|YP_513341.1| - 7.5e-39 133.4 44.8 7.5e-39 133.4 31.0 2.0 1 1 1 2 2 2 1 Major Facilitator Superfamily MFS_2 PF13347.1 gi|89255979|ref|YP_513341.1| - 7.3e-06 24.6 16.6 7.3e-06 24.6 11.5 3.1 2 1 2 4 4 4 2 MFS/sugar transport protein MFS_3 PF05977.8 gi|89255979|ref|YP_513341.1| - 0.043 11.9 20.2 0.014 13.4 3.7 3.0 2 1 1 3 3 3 0 Transmembrane secretion effector Glycophorin_A PF01102.13 gi|89255979|ref|YP_513341.1| - 0.71 9.6 2.4 1.1 9.0 0.1 2.4 2 0 0 2 2 2 0 Glycophorin A DUF1228 PF06779.9 gi|89255979|ref|YP_513341.1| - 2 8.5 13.0 0.57 10.2 0.5 3.6 3 1 1 4 4 4 0 Protein of unknown function (DUF1228) 4HBT PF03061.17 gi|89255980|ref|YP_513342.1| - 1.3e-08 34.8 0.0 1.7e-08 34.4 0.0 1.2 1 0 0 1 1 1 1 Thioesterase superfamily DUF3463 PF11946.3 gi|89255980|ref|YP_513342.1| - 0.0073 15.9 0.0 0.014 14.9 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF3463) PixA PF12306.3 gi|89255980|ref|YP_513342.1| - 0.087 12.6 0.0 0.11 12.2 0.0 1.2 1 0 0 1 1 1 0 Inclusion body protein DUF4442 PF14539.1 gi|89255980|ref|YP_513342.1| - 0.13 12.2 0.0 0.17 11.8 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4442) Thiolase_N PF00108.18 gi|89255981|ref|YP_513343.1| - 5.8e-80 268.0 3.3 8.7e-80 267.4 2.3 1.2 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|89255981|ref|YP_513343.1| - 1.6e-45 153.5 0.4 3.5e-45 152.4 0.3 1.6 1 0 0 1 1 1 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.21 gi|89255981|ref|YP_513343.1| - 0.0011 18.4 0.5 0.0031 17.0 0.2 1.8 1 1 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain FAE1_CUT1_RppA PF08392.7 gi|89255981|ref|YP_513343.1| - 0.0016 17.5 0.1 0.0073 15.4 0.1 2.0 2 0 0 2 2 2 1 FAE1/Type III polyketide synthase-like protein ACP_syn_III PF08545.5 gi|89255981|ref|YP_513343.1| - 0.012 15.3 0.1 2.2 8.0 0.0 2.6 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ACP_syn_III_C PF08541.5 gi|89255981|ref|YP_513343.1| - 0.064 13.2 1.3 0.5 10.4 0.0 3.0 3 1 1 4 4 4 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 3HCDH_N PF02737.13 gi|89255982|ref|YP_513344.1| - 9.9e-50 168.6 0.0 2e-49 167.7 0.0 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ACBP PF00887.14 gi|89255982|ref|YP_513344.1| - 3.1e-24 84.4 1.2 8.3e-24 83.0 0.8 1.7 1 0 0 1 1 1 1 Acyl CoA binding protein ECH PF00378.15 gi|89255982|ref|YP_513344.1| - 6.5e-21 74.5 0.1 1.4e-20 73.5 0.1 1.4 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family 3HCDH PF00725.17 gi|89255982|ref|YP_513344.1| - 5.2e-15 55.6 0.0 2.1e-10 40.8 0.0 2.8 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_Gly3P_dh_N PF01210.18 gi|89255982|ref|YP_513344.1| - 3.4e-07 30.1 0.1 1.1e-06 28.4 0.1 1.9 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.10 gi|89255982|ref|YP_513344.1| - 3.2e-05 23.8 0.0 8.4e-05 22.4 0.0 1.7 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|89255982|ref|YP_513344.1| - 0.055 13.8 0.5 0.27 11.6 0.2 2.4 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.11 gi|89255982|ref|YP_513344.1| - 0.1 12.0 0.1 0.24 10.8 0.0 1.7 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA UDPG_MGDP_dh_N PF03721.9 gi|89255982|ref|YP_513344.1| - 0.1 11.9 0.0 0.22 10.8 0.0 1.6 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DUF1974 PF09317.6 gi|89255983|ref|YP_513345.1| - 1.9e-95 319.5 0.0 2.7e-95 319.0 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1974) Acyl-CoA_dh_N PF02771.11 gi|89255983|ref|YP_513345.1| - 2.1e-15 57.2 0.0 6.3e-15 55.7 0.0 1.8 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_1 PF00441.19 gi|89255983|ref|YP_513345.1| - 4e-15 56.2 0.8 7.4e-15 55.3 0.6 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|89255983|ref|YP_513345.1| - 0.0016 18.7 1.2 0.0027 17.9 0.9 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|89255983|ref|YP_513345.1| - 0.0091 15.4 0.2 0.86 9.1 0.1 2.6 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, middle domain AMP-binding PF00501.23 gi|89255984|ref|YP_513346.1| - 2.7e-89 299.4 0.0 3.6e-89 299.0 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|89255984|ref|YP_513346.1| - 3.3e-12 47.1 0.1 8.2e-12 45.9 0.1 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain RuvC PF02075.12 gi|89255984|ref|YP_513346.1| - 0.12 12.2 0.0 0.31 10.8 0.0 1.6 2 0 0 2 2 2 0 Crossover junction endodeoxyribonuclease RuvC ArsC PF03960.10 gi|89255985|ref|YP_513347.1| - 4e-27 94.4 0.5 4.5e-27 94.3 0.4 1.0 1 0 0 1 1 1 1 ArsC family Glutaredoxin PF00462.19 gi|89255985|ref|YP_513347.1| - 0.00046 20.1 0.0 0.00082 19.3 0.0 1.5 1 1 0 1 1 1 1 Glutaredoxin DUF3213 PF11491.3 gi|89255985|ref|YP_513347.1| - 0.067 13.0 1.4 0.12 12.2 1.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3213) Holin_BlyA PF05102.7 gi|89255985|ref|YP_513347.1| - 0.19 11.4 2.1 0.18 11.5 0.7 1.6 2 0 0 2 2 2 0 holin, BlyA family IDH PF03971.9 gi|89255986|ref|YP_513348.1| - 0 1239.2 8.5 0 1239.0 5.9 1.0 1 0 0 1 1 1 1 Monomeric isocitrate dehydrogenase DUF4115 PF13464.1 gi|89255986|ref|YP_513348.1| - 0.013 15.1 0.1 0.031 13.9 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4115) Wzz PF02706.10 gi|89255987|ref|YP_513349.1| - 2.1e-05 24.3 0.6 2.1e-05 24.3 0.4 3.1 2 1 0 3 3 3 1 Chain length determinant protein PglZ PF08665.7 gi|89255987|ref|YP_513349.1| - 0.18 11.4 2.2 0.22 11.1 0.9 1.6 2 0 0 2 2 2 0 PglZ domain Snapin_Pallidin PF14712.1 gi|89255987|ref|YP_513349.1| - 0.59 10.4 5.6 0.26 11.6 0.3 2.3 1 1 1 2 2 2 0 Snapin/Pallidin Mid2 PF04478.7 gi|89255987|ref|YP_513349.1| - 0.69 9.3 4.9 1.4 8.3 2.7 2.0 1 1 0 1 1 1 0 Mid2 like cell wall stress sensor BLOC1_2 PF10046.4 gi|89255987|ref|YP_513349.1| - 1.9 8.6 10.4 0.11 12.6 3.5 1.6 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF3418 PF11898.3 gi|89255988|ref|YP_513350.1| - 2.4e-189 630.5 12.9 1.5e-188 627.8 9.0 2.0 1 1 0 1 1 1 1 Domain of unknown function (DUF3418) OB_NTP_bind PF07717.11 gi|89255988|ref|YP_513350.1| - 2.1e-22 79.0 0.3 6.9e-22 77.4 0.0 2.0 2 0 0 2 2 2 1 Oligonucleotide/oligosaccharide-binding (OB)-fold HA2 PF04408.18 gi|89255988|ref|YP_513350.1| - 9.2e-17 60.9 0.0 2.9e-16 59.3 0.0 1.9 1 0 0 1 1 1 1 Helicase associated domain (HA2) Helicase_C PF00271.26 gi|89255988|ref|YP_513350.1| - 7.9e-10 38.4 0.3 3.6e-09 36.3 0.0 2.3 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|89255988|ref|YP_513350.1| - 5e-08 32.6 0.1 1.9e-07 30.7 0.0 2.1 1 0 0 1 1 1 1 DEAD/DEAH box helicase AAA_22 PF13401.1 gi|89255988|ref|YP_513350.1| - 1.7e-05 25.0 0.0 0.00012 22.1 0.0 2.5 1 0 0 1 1 1 1 AAA domain T2SE PF00437.15 gi|89255988|ref|YP_513350.1| - 0.0015 17.4 0.0 0.0038 16.1 0.0 1.6 1 0 0 1 1 1 1 Type II/IV secretion system protein DUF258 PF03193.11 gi|89255988|ref|YP_513350.1| - 0.026 13.7 0.0 0.062 12.4 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|89255988|ref|YP_513350.1| - 0.052 12.9 0.0 0.13 11.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|89255988|ref|YP_513350.1| - 0.058 13.7 0.5 0.49 10.6 0.0 3.0 2 0 0 2 2 2 0 ABC transporter Flavi_DEAD PF07652.9 gi|89255988|ref|YP_513350.1| - 0.059 13.1 0.0 0.14 11.8 0.0 1.7 1 0 0 1 1 1 0 Flavivirus DEAD domain AAA_19 PF13245.1 gi|89255988|ref|YP_513350.1| - 0.25 11.1 0.0 0.67 9.7 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain DDE_Tnp_1_2 PF13586.1 gi|89255989|ref|YP_513351.1| - 5.1e-16 58.6 0.2 1.4e-15 57.2 0.1 1.8 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|89255989|ref|YP_513351.1| - 2.8e-13 49.9 1.0 9.6e-13 48.1 0.7 1.7 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|89255989|ref|YP_513351.1| - 2.4e-09 37.1 0.1 3.3e-09 36.6 0.1 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF4096 PF13340.1 gi|89255989|ref|YP_513351.1| - 0.00063 19.5 0.0 0.0012 18.6 0.0 1.5 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) Polysacc_synt_2 PF02719.10 gi|89255990|ref|YP_513352.1| - 1.6e-118 394.8 0.1 2.5e-118 394.2 0.1 1.3 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein Epimerase PF01370.16 gi|89255990|ref|YP_513352.1| - 7.8e-21 74.5 0.2 9.6e-19 67.7 0.1 2.9 2 1 0 2 2 2 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|89255990|ref|YP_513352.1| - 5.9e-13 48.1 0.4 1.2e-12 47.1 0.2 1.6 2 0 0 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|89255990|ref|YP_513352.1| - 1.9e-12 46.7 0.1 5.6e-11 41.8 0.0 2.4 1 1 0 1 1 1 1 RmlD substrate binding domain adh_short PF00106.20 gi|89255990|ref|YP_513352.1| - 4.5e-12 46.2 0.0 2.4e-10 40.5 0.0 2.2 2 0 0 2 2 2 1 short chain dehydrogenase CoA_binding_3 PF13727.1 gi|89255990|ref|YP_513352.1| - 1.4e-11 44.5 0.5 1.4e-11 44.5 0.4 1.6 1 1 1 2 2 2 1 CoA-binding domain NAD_binding_10 PF13460.1 gi|89255990|ref|YP_513352.1| - 2e-07 31.1 0.0 0.0028 17.6 0.0 2.3 2 0 0 2 2 2 2 NADH(P)-binding NAD_binding_4 PF07993.7 gi|89255990|ref|YP_513352.1| - 1.3e-05 24.2 0.1 0.00041 19.3 0.1 2.5 1 1 1 2 2 2 1 Male sterility protein ThiF PF00899.16 gi|89255990|ref|YP_513352.1| - 1.6e-05 24.7 0.0 0.25 11.1 0.0 2.8 2 0 0 2 2 2 2 ThiF family KR PF08659.5 gi|89255990|ref|YP_513352.1| - 3.6e-05 23.4 0.0 0.00029 20.5 0.0 2.0 2 0 0 2 2 2 1 KR domain 3HCDH_N PF02737.13 gi|89255990|ref|YP_513352.1| - 9.6e-05 22.1 0.4 0.013 15.1 0.0 2.7 3 0 0 3 3 3 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Shikimate_DH PF01488.15 gi|89255990|ref|YP_513352.1| - 0.0004 20.4 5.9 0.061 13.4 0.2 3.5 3 1 0 4 4 4 2 Shikimate / quinate 5-dehydrogenase NmrA PF05368.8 gi|89255990|ref|YP_513352.1| - 0.00089 18.5 0.3 0.053 12.7 0.1 2.5 2 0 0 2 2 2 1 NmrA-like family 2-Hacid_dh_C PF02826.14 gi|89255990|ref|YP_513352.1| - 0.0011 18.1 0.0 0.042 13.0 0.0 2.2 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|89255990|ref|YP_513352.1| - 0.0025 17.7 0.1 1 9.3 0.0 2.7 2 0 0 2 2 2 1 TrkA-N domain Pyr_redox_2 PF07992.9 gi|89255990|ref|YP_513352.1| - 0.0028 17.5 0.0 0.0054 16.6 0.0 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase MAF_flag10 PF01973.13 gi|89255990|ref|YP_513352.1| - 0.0048 16.4 1.0 0.4 10.1 0.1 2.6 1 1 1 2 2 2 1 Protein of unknown function DUF115 ApbA PF02558.11 gi|89255990|ref|YP_513352.1| - 0.01 15.2 0.1 0.097 12.1 0.0 2.2 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA NAD_binding_7 PF13241.1 gi|89255990|ref|YP_513352.1| - 0.015 15.5 0.5 3 8.1 0.1 2.7 2 0 0 2 2 2 0 Putative NAD(P)-binding ELFV_dehydrog PF00208.16 gi|89255990|ref|YP_513352.1| - 0.024 14.2 0.1 5.3 6.5 0.0 2.3 2 0 0 2 2 2 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase F420_oxidored PF03807.12 gi|89255990|ref|YP_513352.1| - 0.055 13.8 0.0 0.95 9.9 0.0 2.6 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent DapB_N PF01113.15 gi|89255990|ref|YP_513352.1| - 0.063 13.1 0.0 1.1 9.1 0.0 2.4 2 0 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus NAD_Gly3P_dh_N PF01210.18 gi|89255990|ref|YP_513352.1| - 0.1 12.2 0.1 0.35 10.6 0.0 2.0 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Bac_transf PF02397.11 gi|89255991|ref|YP_513353.1| - 2e-64 216.1 0.0 2.3e-64 215.9 0.0 1.0 1 0 0 1 1 1 1 Bacterial sugar transferase Epimerase PF01370.16 gi|89255992|ref|YP_513354.1| - 3.2e-16 59.4 0.0 1.8e-15 57.0 0.0 1.9 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|89255992|ref|YP_513354.1| - 1e-13 50.6 0.0 1.3e-13 50.2 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|89255992|ref|YP_513354.1| - 1.7e-10 40.2 0.0 2.4e-10 39.7 0.0 1.2 1 0 0 1 1 1 1 Male sterility protein RmlD_sub_bind PF04321.12 gi|89255992|ref|YP_513354.1| - 2.2e-09 36.6 0.0 2.7e-09 36.3 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.1 gi|89255992|ref|YP_513354.1| - 7.2e-07 29.3 0.0 9.4e-07 29.0 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding Flavodoxin_5 PF12724.2 gi|89255992|ref|YP_513354.1| - 0.0088 16.0 0.0 0.018 15.0 0.0 1.6 1 0 0 1 1 1 1 Flavodoxin domain adh_short PF00106.20 gi|89255992|ref|YP_513354.1| - 0.054 13.4 0.0 0.23 11.3 0.0 1.9 1 1 1 2 2 2 0 short chain dehydrogenase Glycos_transf_1 PF00534.15 gi|89255993|ref|YP_513355.1| - 1.5e-29 102.6 0.1 2.8e-29 101.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|89255993|ref|YP_513355.1| - 1.8e-19 69.9 3.9 1.8e-19 69.9 2.7 1.7 2 0 0 2 2 2 1 Glycosyl transferase 4-like Glyco_trans_1_4 PF13692.1 gi|89255993|ref|YP_513355.1| - 3.6e-18 66.0 0.0 1.5e-17 63.9 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|89255993|ref|YP_513355.1| - 2.9e-06 27.4 0.0 5.4e-06 26.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_20 PF00982.16 gi|89255993|ref|YP_513355.1| - 0.026 13.0 0.0 0.039 12.4 0.0 1.2 1 0 0 1 1 1 0 Glycosyltransferase family 20 UDPG_MGDP_dh_N PF03721.9 gi|89255994|ref|YP_513356.1| - 2.7e-46 157.2 1.9 5.9e-46 156.1 0.3 1.9 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.14 gi|89255994|ref|YP_513356.1| - 4.2e-24 84.5 0.0 8e-24 83.6 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.10 gi|89255994|ref|YP_513356.1| - 5.2e-21 74.7 0.2 1.1e-20 73.7 0.1 1.6 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_Gly3P_dh_N PF01210.18 gi|89255994|ref|YP_513356.1| - 0.0063 16.2 0.0 1 9.0 0.0 2.7 3 0 0 3 3 3 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.10 gi|89255994|ref|YP_513356.1| - 0.019 14.7 0.0 0.18 11.5 0.0 2.4 2 1 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase Glyco_trans_4_2 PF13477.1 gi|89255994|ref|YP_513356.1| - 0.083 12.7 0.3 0.32 10.8 0.1 2.1 2 0 0 2 2 2 0 Glycosyl transferase 4-like Epimerase PF01370.16 gi|89255995|ref|YP_513357.1| - 1.9e-59 200.9 0.0 2.4e-59 200.6 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|89255995|ref|YP_513357.1| - 5.6e-30 104.0 0.0 7.4e-30 103.6 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|89255995|ref|YP_513357.1| - 4.9e-16 58.4 0.0 2.4e-15 56.2 0.0 1.8 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.1 gi|89255995|ref|YP_513357.1| - 8.6e-13 48.6 0.0 1.2e-12 48.2 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding NAD_binding_4 PF07993.7 gi|89255995|ref|YP_513357.1| - 1.8e-11 43.4 0.0 3.9e-10 39.0 0.0 2.1 1 1 0 1 1 1 1 Male sterility protein RmlD_sub_bind PF04321.12 gi|89255995|ref|YP_513357.1| - 8e-09 34.7 0.0 1.1e-08 34.3 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase_Csub PF13950.1 gi|89255995|ref|YP_513357.1| - 1.3e-07 31.4 0.0 3.4e-06 26.9 0.0 2.6 3 0 0 3 3 3 1 UDP-glucose 4-epimerase C-term subunit adh_short PF00106.20 gi|89255995|ref|YP_513357.1| - 1.4e-05 25.1 0.0 5.6e-05 23.1 0.0 1.9 1 1 0 1 1 1 1 short chain dehydrogenase NmrA PF05368.8 gi|89255995|ref|YP_513357.1| - 5.4e-05 22.5 0.0 8.9e-05 21.8 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family KR PF08659.5 gi|89255995|ref|YP_513357.1| - 0.0046 16.6 0.0 1.2 8.7 0.0 2.3 2 0 0 2 2 2 2 KR domain 3HCDH_N PF02737.13 gi|89255995|ref|YP_513357.1| - 0.097 12.3 0.0 0.15 11.6 0.0 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Glycos_transf_1 PF00534.15 gi|89255997|ref|YP_513359.1| - 5.3e-19 68.2 0.3 8.7e-19 67.5 0.2 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|89255997|ref|YP_513359.1| - 1.2e-11 44.6 4.2 1.2e-11 44.6 2.9 1.9 2 0 0 2 2 2 1 Glycosyl transferase 4-like Glyco_trans_1_4 PF13692.1 gi|89255997|ref|YP_513359.1| - 1.2e-09 38.4 0.0 1.8e-09 37.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|89255997|ref|YP_513359.1| - 5.3e-06 26.2 0.0 1.1e-05 25.2 0.0 1.5 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|89255997|ref|YP_513359.1| - 0.049 13.8 0.0 0.1 12.9 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|89255997|ref|YP_513359.1| - 0.062 13.4 0.0 0.074 13.1 0.0 1.2 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain Asn_synthase PF00733.16 gi|89255998|ref|YP_513360.1| - 1.9e-77 260.1 0.0 2.6e-77 259.7 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase GATase_7 PF13537.1 gi|89255998|ref|YP_513360.1| - 3.1e-40 136.7 0.0 1.3e-39 134.7 0.0 1.9 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_6 PF13522.1 gi|89255998|ref|YP_513360.1| - 5.1e-37 126.8 0.0 1.1e-36 125.7 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain QueC PF06508.8 gi|89255998|ref|YP_513360.1| - 1.3e-06 27.8 0.0 2.8e-06 26.7 0.0 1.5 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC GATase_2 PF00310.16 gi|89255998|ref|YP_513360.1| - 5.1e-05 22.1 0.0 0.0027 16.4 0.0 2.8 1 1 2 3 3 3 1 Glutamine amidotransferases class-II NAD_synthase PF02540.12 gi|89255998|ref|YP_513360.1| - 0.00012 21.1 0.1 0.00022 20.2 0.0 1.4 1 0 0 1 1 1 1 NAD synthase DUF3700 PF12481.3 gi|89255998|ref|YP_513360.1| - 0.00059 19.1 0.0 0.0015 17.7 0.0 1.7 1 0 0 1 1 1 1 Aluminium induced protein DegT_DnrJ_EryC1 PF01041.12 gi|89255999|ref|YP_513361.1| - 9.7e-87 291.3 0.0 1.2e-86 291.0 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|89255999|ref|YP_513361.1| - 1.8e-08 33.9 0.0 3.9e-08 32.8 0.0 1.5 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.16 gi|89255999|ref|YP_513361.1| - 5e-05 22.4 0.1 9e-05 21.5 0.1 1.5 1 1 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.15 gi|89255999|ref|YP_513361.1| - 0.00018 19.8 0.1 0.00025 19.4 0.1 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.14 gi|89255999|ref|YP_513361.1| - 0.0004 19.2 0.0 0.00051 18.8 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Formyl_trans_N PF00551.14 gi|89256000|ref|YP_513362.1| - 1.5e-14 53.9 0.0 1.9e-14 53.6 0.0 1.2 1 0 0 1 1 1 1 Formyl transferase Fib_alpha PF08702.5 gi|89256000|ref|YP_513362.1| - 0.12 12.5 0.2 0.19 11.8 0.1 1.2 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family Pox_D2 PF04701.8 gi|89256000|ref|YP_513362.1| - 0.13 12.2 2.9 0.14 12.1 0.3 2.0 2 0 0 2 2 2 0 Pox virus D2 protein Polysacc_synt PF01943.12 gi|89256001|ref|YP_513363.1| - 2.1e-19 69.8 28.9 2.1e-19 69.8 20.1 2.7 2 1 1 3 3 3 1 Polysaccharide biosynthesis protein Glycos_transf_2 PF00535.21 gi|89256002|ref|YP_513364.1| - 7.2e-30 103.8 0.5 1e-29 103.4 0.4 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|89256002|ref|YP_513364.1| - 2.1e-17 63.6 0.0 3e-17 63.1 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|89256002|ref|YP_513364.1| - 0.00062 20.0 0.0 0.0011 19.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 NTP_transferase PF00483.18 gi|89256003|ref|YP_513365.1| - 1.3e-65 221.1 0.0 1.5e-65 220.9 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|89256003|ref|YP_513365.1| - 1.3e-07 31.8 0.0 1.9e-07 31.2 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Epimerase PF01370.16 gi|89256004|ref|YP_513366.1| - 3.7e-64 216.3 0.1 4.5e-64 216.1 0.1 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.10 gi|89256004|ref|YP_513366.1| - 2.1e-15 56.3 0.0 2e-13 49.9 0.0 2.0 2 0 0 2 2 2 2 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|89256004|ref|YP_513366.1| - 2.2e-15 56.2 0.0 1.8e-14 53.3 0.0 2.0 1 1 0 1 1 1 1 Male sterility protein 3Beta_HSD PF01073.14 gi|89256004|ref|YP_513366.1| - 2.8e-13 49.2 0.1 8e-13 47.7 0.0 1.7 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|89256004|ref|YP_513366.1| - 9.2e-12 44.4 0.0 1.7e-11 43.6 0.0 1.4 1 1 0 1 1 1 1 RmlD substrate binding domain adh_short PF00106.20 gi|89256004|ref|YP_513366.1| - 0.0003 20.7 0.0 0.019 14.8 0.0 2.2 2 0 0 2 2 2 1 short chain dehydrogenase Epimerase_Csub PF13950.1 gi|89256004|ref|YP_513366.1| - 0.027 14.4 0.0 0.057 13.3 0.0 1.5 1 0 0 1 1 1 0 UDP-glucose 4-epimerase C-term subunit NmrA PF05368.8 gi|89256004|ref|YP_513366.1| - 0.09 12.0 0.0 0.14 11.3 0.0 1.3 1 0 0 1 1 1 0 NmrA-like family DUF2356 PF10189.4 gi|89256004|ref|YP_513366.1| - 0.12 11.4 0.0 0.17 10.8 0.0 1.3 1 0 0 1 1 1 0 Conserved protein (DUF2356) DDE_3 PF13358.1 gi|89256005|ref|YP_513367.1| - 5.3e-31 107.3 0.0 9e-31 106.5 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.11 gi|89256005|ref|YP_513367.1| - 1.6e-07 31.0 0.2 1.1e-06 28.3 0.1 2.1 2 0 0 2 2 2 1 Transposase DDE_1 PF03184.14 gi|89256005|ref|YP_513367.1| - 6e-07 28.8 0.1 9.5e-07 28.1 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_28 PF13518.1 gi|89256005|ref|YP_513367.1| - 0.00058 19.8 0.0 0.0018 18.2 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain rve PF00665.21 gi|89256005|ref|YP_513367.1| - 0.00072 19.6 0.0 0.0013 18.7 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.1 gi|89256005|ref|YP_513367.1| - 0.0087 15.6 0.0 0.029 14.0 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.1 gi|89256005|ref|YP_513367.1| - 0.02 15.0 0.0 0.032 14.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix DDE_Tnp_ISAZ013 PF07592.6 gi|89256005|ref|YP_513367.1| - 0.041 12.6 0.7 0.32 9.7 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain CENP-B_N PF04218.8 gi|89256005|ref|YP_513367.1| - 0.069 12.5 0.0 0.7 9.3 0.0 2.5 3 0 0 3 3 3 0 CENP-B N-terminal DNA-binding domain NTP_transferase PF00483.18 gi|89256006|ref|YP_513368.1| - 1.6e-71 240.5 0.2 5.6e-71 238.7 0.0 1.8 2 0 0 2 2 2 1 Nucleotidyl transferase MannoseP_isomer PF01050.13 gi|89256006|ref|YP_513368.1| - 3.2e-59 198.8 3.8 9e-59 197.4 2.6 1.8 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_2 PF07883.6 gi|89256006|ref|YP_513368.1| - 2.5e-10 39.7 0.0 5e-10 38.7 0.0 1.5 1 0 0 1 1 1 1 Cupin domain NTP_transf_3 PF12804.2 gi|89256006|ref|YP_513368.1| - 9.1e-07 29.0 0.0 2.3e-06 27.7 0.0 1.7 2 0 0 2 2 2 1 MobA-like NTP transferase domain PGM_PMM_I PF02878.11 gi|89256007|ref|YP_513369.1| - 5.6e-28 97.1 0.0 1.1e-27 96.2 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_III PF02880.11 gi|89256007|ref|YP_513369.1| - 2.7e-17 62.8 0.0 8.9e-17 61.1 0.0 1.9 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_II PF02879.11 gi|89256007|ref|YP_513369.1| - 1.3e-12 47.9 0.0 3.3e-12 46.6 0.0 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.15 gi|89256007|ref|YP_513369.1| - 9.7e-11 41.5 0.0 2.3e-10 40.3 0.0 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain RasGAP PF00616.14 gi|89256007|ref|YP_513369.1| - 0.055 13.1 0.0 0.15 11.6 0.0 1.8 1 1 1 2 2 2 0 GTPase-activator protein for Ras-like GTPase ATP-synt_ab PF00006.20 gi|89256008|ref|YP_513370.1| - 3.3e-43 147.6 0.1 4.3e-43 147.3 0.1 1.1 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain Rho_RNA_bind PF07497.7 gi|89256008|ref|YP_513370.1| - 2.8e-35 119.7 0.1 5.1e-35 118.9 0.1 1.4 1 0 0 1 1 1 1 Rho termination factor, RNA-binding domain Rho_N PF07498.7 gi|89256008|ref|YP_513370.1| - 3.3e-13 49.1 0.6 8.6e-13 47.8 0.4 1.8 1 0 0 1 1 1 1 Rho termination factor, N-terminal domain AAA_25 PF13481.1 gi|89256008|ref|YP_513370.1| - 2.7e-06 26.9 0.1 7.7e-06 25.4 0.0 1.7 1 1 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|89256008|ref|YP_513370.1| - 0.0011 18.7 0.0 0.0018 17.9 0.0 1.3 1 0 0 1 1 1 1 NACHT domain AAA PF00004.24 gi|89256008|ref|YP_513370.1| - 0.0038 17.4 0.1 0.01 16.0 0.0 1.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|89256008|ref|YP_513370.1| - 0.004 17.2 0.0 0.011 15.8 0.0 1.7 1 0 0 1 1 1 1 AAA domain FtsK_SpoIIIE PF01580.13 gi|89256008|ref|YP_513370.1| - 0.005 16.3 0.0 0.0083 15.6 0.0 1.4 1 0 0 1 1 1 1 FtsK/SpoIIIE family OB_RNB PF08206.6 gi|89256008|ref|YP_513370.1| - 0.02 14.3 0.0 0.041 13.3 0.0 1.5 1 0 0 1 1 1 0 Ribonuclease B OB domain DUF3086 PF11285.3 gi|89256008|ref|YP_513370.1| - 0.058 12.1 0.0 0.12 11.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3086) Thioredoxin PF00085.15 gi|89256009|ref|YP_513371.1| - 1.7e-32 111.1 0.1 1.9e-32 111.0 0.1 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|89256009|ref|YP_513371.1| - 2.2e-11 43.9 0.3 1.1e-10 41.7 0.2 1.8 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.1 gi|89256009|ref|YP_513371.1| - 1.3e-09 38.0 0.0 1.1e-08 35.0 0.0 2.0 1 1 0 1 1 1 1 Thioredoxin-like Thioredoxin_7 PF13899.1 gi|89256009|ref|YP_513371.1| - 2.1e-06 27.6 0.0 2.8e-06 27.2 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_3 PF13192.1 gi|89256009|ref|YP_513371.1| - 4.2e-06 26.4 0.1 5.1e-06 26.2 0.1 1.2 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_9 PF14595.1 gi|89256009|ref|YP_513371.1| - 4e-05 23.1 0.1 4.7e-05 22.9 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Redoxin PF08534.5 gi|89256009|ref|YP_513371.1| - 6.2e-05 22.5 0.0 7.6e-05 22.2 0.0 1.2 1 0 0 1 1 1 1 Redoxin DUF836 PF05768.9 gi|89256009|ref|YP_513371.1| - 0.00017 21.7 0.0 0.00034 20.8 0.0 1.5 2 0 0 2 2 2 1 Glutaredoxin-like domain (DUF836) AhpC-TSA PF00578.16 gi|89256009|ref|YP_513371.1| - 0.00028 20.5 0.0 0.00033 20.3 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family TraF PF13728.1 gi|89256009|ref|YP_513371.1| - 0.00052 19.5 0.0 0.00068 19.1 0.0 1.1 1 0 0 1 1 1 1 F plasmid transfer operon protein Glutaredoxin PF00462.19 gi|89256009|ref|YP_513371.1| - 0.00056 19.8 0.0 0.0012 18.8 0.0 1.5 1 0 0 1 1 1 1 Glutaredoxin DSBA PF01323.15 gi|89256009|ref|YP_513371.1| - 0.002 17.6 0.5 0.032 13.7 0.1 2.0 1 1 1 2 2 2 1 DSBA-like thioredoxin domain Thioredoxin_5 PF13743.1 gi|89256009|ref|YP_513371.1| - 0.003 17.1 0.1 1.2 8.7 0.0 2.1 1 1 1 2 2 2 2 Thioredoxin HyaE PF07449.6 gi|89256009|ref|YP_513371.1| - 0.024 14.5 0.0 0.033 14.0 0.0 1.2 1 0 0 1 1 1 0 Hydrogenase-1 expression protein HyaE Thioredoxin_6 PF13848.1 gi|89256009|ref|YP_513371.1| - 0.043 13.6 0.0 0.065 13.0 0.0 1.4 1 1 0 1 1 1 0 Thioredoxin-like domain DUF4174 PF13778.1 gi|89256009|ref|YP_513371.1| - 0.14 12.3 0.1 0.18 11.9 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4174) Ppx-GppA PF02541.11 gi|89256010|ref|YP_513372.1| - 5.6e-65 219.3 1.6 6.4e-65 219.1 1.1 1.0 1 0 0 1 1 1 1 Ppx/GppA phosphatase family FtsA PF14450.1 gi|89256010|ref|YP_513372.1| - 1.7e-06 27.8 2.0 0.003 17.3 0.1 2.4 2 0 0 2 2 2 2 Cell division protein FtsA DDR PF08841.5 gi|89256010|ref|YP_513372.1| - 0.0017 17.2 0.0 0.003 16.4 0.0 1.3 1 0 0 1 1 1 1 Diol dehydratase reactivase ATPase-like domain CBFD_NFYB_HMF PF00808.18 gi|89256010|ref|YP_513372.1| - 0.012 15.6 0.0 0.024 14.6 0.0 1.5 1 0 0 1 1 1 0 Histone-like transcription factor (CBF/NF-Y) and archaeal histone MreB_Mbl PF06723.8 gi|89256010|ref|YP_513372.1| - 0.013 14.0 0.5 0.028 13.0 0.2 1.6 1 1 1 2 2 2 0 MreB/Mbl protein DDE_Tnp_1_2 PF13586.1 gi|89256011|ref|YP_513373.1| - 5.4e-16 58.5 0.1 1.6e-15 57.0 0.1 1.8 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|89256011|ref|YP_513373.1| - 3.1e-13 49.7 1.0 1.1e-12 48.0 0.7 1.7 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|89256011|ref|YP_513373.1| - 2.6e-09 37.0 0.1 3.7e-09 36.5 0.1 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF4096 PF13340.1 gi|89256011|ref|YP_513373.1| - 0.00068 19.4 0.0 0.0013 18.5 0.0 1.5 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) MgsA_C PF12002.3 gi|89256012|ref|YP_513374.1| - 3.6e-60 202.4 0.2 6.6e-60 201.6 0.2 1.4 1 0 0 1 1 1 1 MgsA AAA+ ATPase C terminal FYRN PF05964.9 gi|89256012|ref|YP_513374.1| - 0.015 14.7 0.1 0.033 13.6 0.1 1.5 1 0 0 1 1 1 0 F/Y-rich N-terminus RNA_pol_A_CTD PF03118.10 gi|89256013|ref|YP_513375.1| - 5.1e-25 86.6 1.8 1.1e-24 85.5 1.3 1.6 1 0 0 1 1 1 1 Bacterial RNA polymerase, alpha chain C terminal domain RNA_pol_L PF01193.19 gi|89256013|ref|YP_513375.1| - 7.8e-12 44.1 0.0 1.8e-11 42.9 0.0 1.6 1 1 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_A_bac PF01000.21 gi|89256013|ref|YP_513375.1| - 1.8e-06 28.1 0.2 4.9e-06 26.6 0.0 1.8 2 0 0 2 2 2 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L_2 PF13656.1 gi|89256013|ref|YP_513375.1| - 0.076 12.4 0.0 0.31 10.4 0.0 2.1 2 0 0 2 2 2 0 RNA polymerase Rpb3/Rpb11 dimerisation domain Ferritin PF00210.19 gi|89256014|ref|YP_513376.1| - 7.7e-17 61.3 1.7 9.3e-17 61.1 1.2 1.0 1 0 0 1 1 1 1 Ferritin-like domain Rubrerythrin PF02915.12 gi|89256014|ref|YP_513376.1| - 0.0023 18.2 1.6 0.12 12.6 0.5 2.0 2 0 0 2 2 2 1 Rubrerythrin Ferritin-like PF12902.2 gi|89256014|ref|YP_513376.1| - 0.13 11.8 1.5 0.14 11.7 0.6 1.3 1 1 0 1 1 1 0 Ferritin-like DUF2570 PF10828.3 gi|89256014|ref|YP_513376.1| - 0.19 11.3 2.6 1.1 8.8 0.1 2.6 2 1 1 3 3 3 0 Protein of unknown function (DUF2570) DUF2383 PF09537.5 gi|89256014|ref|YP_513376.1| - 0.24 11.6 2.0 3.9 7.7 0.2 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF2383) TatD_DNase PF01026.16 gi|89256015|ref|YP_513377.1| - 7.1e-82 274.4 1.0 8e-82 274.2 0.7 1.0 1 0 0 1 1 1 1 TatD related DNase TAFII28 PF04719.9 gi|89256015|ref|YP_513377.1| - 0.14 11.9 0.5 0.44 10.3 0.0 1.9 2 0 0 2 2 2 0 hTAFII28-like protein conserved region CbiX PF01903.12 gi|89256015|ref|YP_513377.1| - 0.15 12.1 0.3 0.87 9.7 0.1 2.2 2 0 0 2 2 2 0 CbiX DDE_Tnp_1_2 PF13586.1 gi|89256016|ref|YP_513378.1| - 4.5e-16 58.7 0.1 1.3e-15 57.3 0.1 1.8 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|89256016|ref|YP_513378.1| - 2.5e-13 50.0 1.1 8.8e-13 48.2 0.7 1.7 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|89256016|ref|YP_513378.1| - 2.2e-09 37.2 0.1 3e-09 36.8 0.1 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF4096 PF13340.1 gi|89256016|ref|YP_513378.1| - 0.00059 19.6 0.0 0.0012 18.6 0.0 1.5 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) ABC_tran PF00005.22 gi|89256017|ref|YP_513379.1| - 6.1e-31 107.5 0.0 1.1e-30 106.7 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|89256017|ref|YP_513379.1| - 4.3e-14 53.1 4.2 4.4e-13 49.8 1.1 2.5 2 1 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|89256017|ref|YP_513379.1| - 0.00031 20.2 0.2 0.00065 19.1 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|89256017|ref|YP_513379.1| - 0.0013 17.9 2.1 0.076 12.2 0.2 2.8 2 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|89256017|ref|YP_513379.1| - 0.0016 17.9 0.7 0.039 13.3 0.1 2.5 1 1 2 3 3 3 1 AAA-like domain AAA_23 PF13476.1 gi|89256017|ref|YP_513379.1| - 0.0027 18.0 6.2 0.0053 17.1 4.3 1.8 1 1 0 1 1 1 1 AAA domain DUF87 PF01935.12 gi|89256017|ref|YP_513379.1| - 0.0038 17.0 2.8 0.017 14.9 1.9 2.1 1 1 0 1 1 1 1 Domain of unknown function DUF87 SRP54 PF00448.17 gi|89256017|ref|YP_513379.1| - 0.0049 16.3 0.0 0.0089 15.4 0.0 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain DUF258 PF03193.11 gi|89256017|ref|YP_513379.1| - 0.016 14.4 0.1 0.038 13.1 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function, DUF258 IstB_IS21 PF01695.12 gi|89256017|ref|YP_513379.1| - 0.021 14.2 0.1 1.9 7.8 0.0 2.4 2 0 0 2 2 2 0 IstB-like ATP binding protein MutS_V PF00488.16 gi|89256017|ref|YP_513379.1| - 0.025 13.9 0.1 3.6 6.9 0.0 2.2 2 0 0 2 2 2 0 MutS domain V AAA_30 PF13604.1 gi|89256017|ref|YP_513379.1| - 0.031 13.8 0.0 0.064 12.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|89256017|ref|YP_513379.1| - 0.034 14.2 0.6 0.5 10.5 0.2 2.7 2 1 0 2 2 2 0 AAA domain SbcCD_C PF13558.1 gi|89256017|ref|YP_513379.1| - 0.035 14.0 0.0 0.13 12.1 0.0 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_16 PF13191.1 gi|89256017|ref|YP_513379.1| - 0.093 12.7 0.0 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain AAA_5 PF07728.9 gi|89256017|ref|YP_513379.1| - 0.1 12.2 0.1 1.8 8.2 0.0 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) ABC2_membrane PF01061.19 gi|89256018|ref|YP_513380.1| - 4.5e-29 101.1 22.7 4.5e-29 101.1 15.7 1.9 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|89256018|ref|YP_513380.1| - 1.3e-07 31.0 33.3 1.3e-07 31.0 23.1 1.8 1 1 0 2 2 2 1 ABC-2 family transporter protein Glycos_transf_2 PF00535.21 gi|89256019|ref|YP_513381.1| - 1.2e-23 83.6 0.0 1.8e-23 83.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|89256019|ref|YP_513381.1| - 6.9e-05 22.7 0.0 8.7e-05 22.4 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|89256019|ref|YP_513381.1| - 0.00088 18.4 0.0 0.0013 17.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Thioredoxin_6 PF13848.1 gi|89256019|ref|YP_513381.1| - 0.001 18.9 0.1 0.0018 18.0 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like domain Glyco_transf_7N PF13733.1 gi|89256019|ref|YP_513381.1| - 0.043 13.1 0.0 0.49 9.7 0.0 2.2 2 0 0 2 2 2 0 N-terminal region of glycosyl transferase group 7 Glyco_transf_21 PF13506.1 gi|89256019|ref|YP_513381.1| - 0.068 12.4 0.0 0.14 11.4 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase family 21 NAD_kinase PF01513.16 gi|89256020|ref|YP_513382.1| - 1.1e-55 188.4 0.6 1.4e-55 188.1 0.4 1.1 1 0 0 1 1 1 1 ATP-NAD kinase Epimerase_2 PF02350.14 gi|89256020|ref|YP_513382.1| - 0.013 14.2 0.0 0.022 13.5 0.0 1.3 1 0 0 1 1 1 0 UDP-N-acetylglucosamine 2-epimerase His_biosynth PF00977.16 gi|89256020|ref|YP_513382.1| - 0.04 13.1 0.2 5.6 6.1 0.0 2.1 2 0 0 2 2 2 0 Histidine biosynthesis protein Zeta_toxin PF06414.7 gi|89256020|ref|YP_513382.1| - 0.092 11.8 0.2 0.15 11.1 0.1 1.3 1 0 0 1 1 1 0 Zeta toxin LysE PF01810.13 gi|89256021|ref|YP_513383.1| - 4e-26 91.4 12.5 4.7e-26 91.2 8.7 1.0 1 0 0 1 1 1 1 LysE type translocator DUF808 PF05661.7 gi|89256021|ref|YP_513383.1| - 0.022 13.6 0.9 0.036 12.8 0.7 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF808) TIM21 PF08294.6 gi|89256021|ref|YP_513383.1| - 0.27 10.8 1.2 1.9 8.1 0.5 2.2 2 0 0 2 2 2 0 TIM21 DDE_3 PF13358.1 gi|89256022|ref|YP_513384.1| - 1.7e-31 108.9 0.0 2.8e-31 108.2 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.11 gi|89256022|ref|YP_513384.1| - 1.5e-07 31.0 0.2 1.1e-06 28.3 0.1 2.1 2 0 0 2 2 2 1 Transposase DDE_1 PF03184.14 gi|89256022|ref|YP_513384.1| - 5.8e-07 28.8 0.1 9.5e-07 28.1 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_28 PF13518.1 gi|89256022|ref|YP_513384.1| - 0.00058 19.8 0.0 0.0018 18.2 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain rve PF00665.21 gi|89256022|ref|YP_513384.1| - 0.00072 19.6 0.0 0.0013 18.7 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.1 gi|89256022|ref|YP_513384.1| - 0.0087 15.6 0.0 0.029 14.0 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.1 gi|89256022|ref|YP_513384.1| - 0.02 15.0 0.0 0.032 14.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix DDE_Tnp_ISAZ013 PF07592.6 gi|89256022|ref|YP_513384.1| - 0.039 12.6 0.6 0.32 9.7 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain HTH_5 PF01022.15 gi|89256023|ref|YP_513385.1| - 4.3e-16 58.2 1.9 1.1e-15 57.0 1.1 1.7 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|89256023|ref|YP_513385.1| - 4.2e-12 45.6 0.7 8e-12 44.7 0.6 1.4 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|89256023|ref|YP_513385.1| - 2.6e-07 30.2 0.1 1.1e-06 28.1 0.1 1.8 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.1 gi|89256023|ref|YP_513385.1| - 1.4e-06 27.6 0.1 1.3e-05 24.5 0.1 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|89256023|ref|YP_513385.1| - 2e-06 27.4 0.1 4e-06 26.4 0.0 1.6 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.1 gi|89256023|ref|YP_513385.1| - 1.9e-05 24.6 0.1 2.9e-05 24.0 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|89256023|ref|YP_513385.1| - 6.8e-05 22.3 0.3 0.0002 20.8 0.1 1.8 2 1 0 2 2 2 1 IclR helix-turn-helix domain Rrf2 PF02082.15 gi|89256023|ref|YP_513385.1| - 0.00083 19.4 0.1 0.0013 18.8 0.1 1.6 1 1 0 1 1 1 1 Transcriptional regulator TFIIE_alpha PF02002.12 gi|89256023|ref|YP_513385.1| - 0.00093 18.6 0.1 0.0017 17.8 0.0 1.4 1 1 0 1 1 1 1 TFIIE alpha subunit MarR PF01047.17 gi|89256023|ref|YP_513385.1| - 0.0021 17.7 0.1 0.021 14.5 0.1 2.0 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.1 gi|89256023|ref|YP_513385.1| - 0.0035 17.6 0.0 0.0076 16.5 0.0 1.6 1 1 1 2 2 2 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.1 gi|89256023|ref|YP_513385.1| - 0.011 15.4 0.0 0.017 14.8 0.0 1.5 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain HxlR PF01638.12 gi|89256023|ref|YP_513385.1| - 0.014 15.0 0.0 0.017 14.7 0.0 1.2 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_11 PF08279.7 gi|89256023|ref|YP_513385.1| - 0.021 14.4 0.0 0.036 13.7 0.0 1.4 1 0 0 1 1 1 0 HTH domain HTH_10 PF04967.7 gi|89256023|ref|YP_513385.1| - 0.027 14.0 0.0 0.046 13.3 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain Rhodanese PF00581.15 gi|89256024|ref|YP_513386.1| - 8.1e-15 55.1 0.1 1.3e-14 54.5 0.0 1.3 1 0 0 1 1 1 1 Rhodanese-like domain DUF2892 PF11127.3 gi|89256024|ref|YP_513386.1| - 1.3e-08 34.4 0.6 1.9e-08 34.0 0.4 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2892) HycI PF01750.13 gi|89256024|ref|YP_513386.1| - 0.095 12.2 0.2 0.37 10.3 0.1 1.8 2 0 0 2 2 2 0 Hydrogenase maturation protease NAD_binding_8 PF13450.1 gi|89256025|ref|YP_513387.1| - 3.9e-05 23.5 0.1 4.1e-05 23.5 0.1 1.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.9 gi|89256025|ref|YP_513387.1| - 0.00028 20.8 0.1 0.00029 20.7 0.0 1.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|89256025|ref|YP_513387.1| - 0.089 11.6 0.1 0.089 11.6 0.1 1.0 1 0 0 1 1 1 0 FAD binding domain GMC_oxred_N PF00732.14 gi|89256025|ref|YP_513387.1| - 0.097 11.8 0.0 0.1 11.7 0.0 1.0 1 0 0 1 1 1 0 GMC oxidoreductase DAO PF01266.19 gi|89256025|ref|YP_513387.1| - 0.1 11.4 0.1 0.11 11.3 0.1 1.0 1 0 0 1 1 1 0 FAD dependent oxidoreductase Lycopene_cycl PF05834.7 gi|89256025|ref|YP_513387.1| - 0.12 11.2 0.1 0.13 11.1 0.0 1.0 1 0 0 1 1 1 0 Lycopene cyclase protein Pyr_redox PF00070.22 gi|89256026|ref|YP_513388.1| - 3.9e-20 72.0 1.8 6.2e-19 68.1 0.3 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|89256026|ref|YP_513388.1| - 8.7e-16 58.3 1.8 2.3e-07 30.8 0.1 2.5 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|89256026|ref|YP_513388.1| - 9.5e-11 41.1 0.0 5.8e-05 22.1 0.0 2.9 3 0 0 3 3 3 2 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|89256026|ref|YP_513388.1| - 5.6e-06 26.5 0.1 0.00046 20.3 0.2 2.6 1 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.13 gi|89256026|ref|YP_513388.1| - 1.6e-05 24.8 1.4 0.003 17.5 0.1 2.6 2 1 1 3 3 3 1 TrkA-N domain 3HCDH_N PF02737.13 gi|89256026|ref|YP_513388.1| - 2.2e-05 24.2 0.0 3.8e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K_oxygenase PF13434.1 gi|89256026|ref|YP_513388.1| - 3e-05 23.1 0.0 4e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 L-lysine 6-monooxygenase (NADPH-requiring) Lycopene_cycl PF05834.7 gi|89256026|ref|YP_513388.1| - 0.00013 21.0 0.0 0.0017 17.3 0.0 2.0 1 1 1 2 2 2 1 Lycopene cyclase protein HI0933_like PF03486.9 gi|89256026|ref|YP_513388.1| - 0.00021 19.8 0.9 0.022 13.2 0.1 2.9 2 1 1 3 3 3 1 HI0933-like protein NAD_binding_9 PF13454.1 gi|89256026|ref|YP_513388.1| - 0.00026 20.8 0.4 1.3 8.7 0.0 3.5 3 1 0 4 4 4 1 FAD-NAD(P)-binding NAD_binding_8 PF13450.1 gi|89256026|ref|YP_513388.1| - 0.00028 20.8 0.0 0.00086 19.2 0.0 1.8 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain UDPG_MGDP_dh_N PF03721.9 gi|89256026|ref|YP_513388.1| - 0.00036 19.9 0.1 0.00077 18.8 0.0 1.6 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain GIDA PF01134.17 gi|89256026|ref|YP_513388.1| - 0.00088 18.2 0.4 0.05 12.4 0.1 2.8 2 1 1 3 3 3 1 Glucose inhibited division protein A NAD_binding_2 PF03446.10 gi|89256026|ref|YP_513388.1| - 0.0021 17.9 0.0 0.0036 17.1 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|89256026|ref|YP_513388.1| - 0.0038 16.9 0.0 0.023 14.4 0.0 2.1 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DUF1188 PF06690.6 gi|89256026|ref|YP_513388.1| - 0.006 15.7 0.5 0.0088 15.2 0.3 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1188) 2-Hacid_dh_C PF02826.14 gi|89256026|ref|YP_513388.1| - 0.0076 15.4 0.0 0.012 14.7 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|89256026|ref|YP_513388.1| - 0.011 15.0 0.0 0.02 14.2 0.0 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain AlaDh_PNT_C PF01262.16 gi|89256026|ref|YP_513388.1| - 0.012 15.2 0.0 0.017 14.6 0.0 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Shikimate_DH PF01488.15 gi|89256026|ref|YP_513388.1| - 0.021 14.9 0.3 0.049 13.7 0.1 1.6 1 1 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Thi4 PF01946.12 gi|89256026|ref|YP_513388.1| - 0.023 13.7 0.2 0.069 12.2 0.0 1.8 2 1 1 3 3 3 0 Thi4 family UPF0146 PF03686.8 gi|89256026|ref|YP_513388.1| - 0.023 14.4 0.4 0.096 12.5 0.2 2.0 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0146) NAD_binding_10 PF13460.1 gi|89256026|ref|YP_513388.1| - 0.046 13.7 0.0 0.071 13.1 0.0 1.3 1 0 0 1 1 1 0 NADH(P)-binding NAD_binding_7 PF13241.1 gi|89256026|ref|YP_513388.1| - 0.058 13.6 0.4 0.15 12.3 0.0 1.9 3 0 0 3 3 2 0 Putative NAD(P)-binding DFP PF04127.10 gi|89256026|ref|YP_513388.1| - 0.063 12.8 0.0 0.099 12.2 0.0 1.4 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein Transketolase_C PF02780.15 gi|89256026|ref|YP_513388.1| - 0.065 13.1 0.1 0.15 12.0 0.0 1.6 1 1 0 1 1 1 0 Transketolase, C-terminal domain Glyco_transf_4 PF13439.1 gi|89256026|ref|YP_513388.1| - 0.079 12.6 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 Glycosyltransferase Family 4 ApbA PF02558.11 gi|89256026|ref|YP_513388.1| - 0.09 12.2 0.0 0.18 11.2 0.0 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA FAD_binding_3 PF01494.14 gi|89256026|ref|YP_513388.1| - 0.11 11.5 0.0 0.18 10.8 0.0 1.3 1 0 0 1 1 1 0 FAD binding domain Pyr_redox_dim PF02852.17 gi|89256027|ref|YP_513389.1| - 8.8e-13 48.2 0.0 1.6e-12 47.4 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Rhodanese PF00581.15 gi|89256027|ref|YP_513389.1| - 3.4e-12 46.7 0.0 1.7e-11 44.4 0.0 2.0 2 0 0 2 2 2 1 Rhodanese-like domain Lactamase_B PF00753.22 gi|89256028|ref|YP_513390.1| - 7.8e-21 74.6 0.1 1e-20 74.2 0.1 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily TauE PF01925.14 gi|89256029|ref|YP_513391.1| - 1.6e-48 165.2 36.5 1.9e-48 165.0 25.3 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF2104 PF09877.4 gi|89256029|ref|YP_513391.1| - 0.018 15.0 1.4 0.018 15.0 1.0 3.5 3 1 1 4 4 4 0 Predicted membrane protein (DUF2104) Peptidase_U4 PF03419.8 gi|89256029|ref|YP_513391.1| - 8.2 5.4 27.3 0.1 11.6 10.2 2.1 1 1 1 2 2 2 0 Sporulation factor SpoIIGA 2OG-FeII_Oxy_3 PF13640.1 gi|89256030|ref|YP_513392.1| - 1.6e-16 60.6 0.0 2.3e-16 60.1 0.0 1.2 1 0 0 1 1 1 1 2OG-Fe(II) oxygenase superfamily 2OG-FeII_Oxy_4 PF13661.1 gi|89256030|ref|YP_513392.1| - 1.6e-06 27.6 0.0 3.1e-06 26.7 0.0 1.4 1 0 0 1 1 1 1 2OG-Fe(II) oxygenase superfamily 2OG-FeII_Oxy PF03171.15 gi|89256030|ref|YP_513392.1| - 1.1e-05 25.6 0.0 1.9e-05 24.8 0.0 1.3 1 0 0 1 1 1 1 2OG-Fe(II) oxygenase superfamily Tet_JBP PF12851.2 gi|89256030|ref|YP_513392.1| - 3.3e-05 23.2 0.0 4.7e-05 22.7 0.0 1.2 1 0 0 1 1 1 1 Oxygenase domain of the 2OGFeDO superfamily 2OG-FeII_Oxy_5 PF13759.1 gi|89256030|ref|YP_513392.1| - 0.016 15.5 0.0 0.068 13.4 0.0 1.8 1 1 1 2 2 2 0 Putative 2OG-Fe(II) oxygenase MAF_flag10 PF01973.13 gi|89256030|ref|YP_513392.1| - 0.043 13.3 0.1 0.082 12.4 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function DUF115 CxxCxxCC PF03692.10 gi|89256031|ref|YP_513393.1| - 6.7e-06 26.4 11.1 1.5e-05 25.3 7.7 1.6 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain AvrD PF05655.6 gi|89256032|ref|YP_513394.1| - 0.012 14.5 0.2 0.014 14.3 0.2 1.1 1 0 0 1 1 1 0 Pseudomonas avirulence D protein (AvrD) SmpA_OmlA PF04355.8 gi|89256033|ref|YP_513395.1| - 0.00088 18.8 0.0 0.0015 18.0 0.0 1.4 1 0 0 1 1 1 1 SmpA / OmlA family CAP_assoc_N PF14504.1 gi|89256033|ref|YP_513395.1| - 0.038 13.6 0.1 0.056 13.1 0.0 1.3 1 0 0 1 1 1 0 CAP-associated N-terminal NusB PF01029.13 gi|89256034|ref|YP_513396.1| - 2.1e-28 98.9 1.9 2.4e-28 98.7 1.3 1.0 1 0 0 1 1 1 1 NusB family DNApol3-delta_C PF09115.5 gi|89256034|ref|YP_513396.1| - 0.014 15.4 0.1 0.022 14.7 0.1 1.3 1 0 0 1 1 1 0 DNA polymerase III, delta subunit, C terminal DnaB_2 PF07261.6 gi|89256034|ref|YP_513396.1| - 0.24 11.0 1.6 15 5.2 0.0 2.4 1 1 1 2 2 2 0 Replication initiation and membrane attachment CN_hydrolase PF00795.17 gi|89256035|ref|YP_513397.1| - 7e-11 41.8 0.0 1.2e-10 41.0 0.0 1.4 1 1 0 1 1 1 1 Carbon-nitrogen hydrolase Cache_1 PF02743.13 gi|89256035|ref|YP_513397.1| - 0.043 13.3 0.0 0.12 11.9 0.0 1.7 1 0 0 1 1 1 0 Cache domain MEKHLA PF08670.6 gi|89256035|ref|YP_513397.1| - 0.1 12.1 0.1 0.22 11.0 0.1 1.6 1 0 0 1 1 1 0 MEKHLA domain DUF3568 PF12092.3 gi|89256036|ref|YP_513398.1| - 1e-35 122.2 5.3 1.2e-35 122.0 3.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3568) PhdYeFM_antitox PF02604.14 gi|89256036|ref|YP_513398.1| - 0.079 12.5 0.0 0.12 11.9 0.0 1.2 1 0 0 1 1 1 0 Antitoxin Phd_YefM, type II toxin-antitoxin system LPAM_1 PF08139.7 gi|89256036|ref|YP_513398.1| - 0.43 10.8 2.8 0.84 9.9 2.0 1.5 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site DNA_pol3_delta2 PF13177.1 gi|89256037|ref|YP_513399.1| - 0.0055 16.3 2.3 0.0078 15.8 1.1 1.6 2 0 0 2 2 2 1 DNA polymerase III, delta subunit DUF1905 PF08922.6 gi|89256038|ref|YP_513400.1| - 0.054 13.0 0.0 0.099 12.2 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1905) APP_N PF02177.11 gi|89256038|ref|YP_513400.1| - 0.078 12.8 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 Amyloid A4 N-terminal heparin-binding Aminotran_1_2 PF00155.16 gi|89256039|ref|YP_513401.1| - 1e-26 93.7 0.0 1.2e-26 93.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DUF1707 PF08044.6 gi|89256039|ref|YP_513401.1| - 0.12 12.1 0.0 0.25 11.1 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1707) Aminotran_1_2 PF00155.16 gi|89256040|ref|YP_513402.1| - 1.1e-13 50.8 0.0 1.4e-13 50.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DUF3941 PF13081.1 gi|89256040|ref|YP_513402.1| - 0.058 13.3 1.1 0.19 11.7 0.8 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF3941) AAA_10 PF12846.2 gi|89256040|ref|YP_513402.1| - 0.1 12.0 0.0 0.14 11.5 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain tRNA-synt_2b PF00587.20 gi|89256041|ref|YP_513403.1| - 3.6e-37 127.6 0.0 6e-37 126.8 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA_edit PF04073.10 gi|89256041|ref|YP_513403.1| - 1.2e-25 89.7 0.0 2.1e-25 88.9 0.0 1.4 1 0 0 1 1 1 1 Aminoacyl-tRNA editing domain HGTP_anticodon PF03129.15 gi|89256041|ref|YP_513403.1| - 1.5e-21 76.1 0.1 2.9e-21 75.2 0.1 1.5 1 0 0 1 1 1 1 Anticodon binding domain DUF2373 PF10180.4 gi|89256042|ref|YP_513404.1| - 0.1 12.1 0.1 0.21 11.1 0.1 1.5 1 0 0 1 1 1 0 Uncharacterised conserved protein (DUF2373) OST3_OST6 PF04756.8 gi|89256042|ref|YP_513404.1| - 0.11 12.1 0.0 0.13 11.8 0.0 1.1 1 0 0 1 1 1 0 OST3 / OST6 family DndB PF14072.1 gi|89256042|ref|YP_513404.1| - 0.11 11.6 0.1 0.12 11.4 0.1 1.0 1 0 0 1 1 1 0 DNA-sulfur modification-associated DsbB PF02600.11 gi|89256043|ref|YP_513405.1| - 6.3e-13 48.8 23.5 2e-11 43.9 16.3 2.6 1 1 0 1 1 1 1 Disulfide bond formation protein DsbB MFS_2 PF13347.1 gi|89256043|ref|YP_513405.1| - 0.0011 17.5 1.6 0.0011 17.5 1.1 1.5 1 1 0 1 1 1 1 MFS/sugar transport protein AA_permease_2 PF13520.1 gi|89256043|ref|YP_513405.1| - 0.04 12.4 14.2 0.073 11.5 9.8 1.4 1 1 0 1 1 1 0 Amino acid permease GPI2 PF06432.6 gi|89256043|ref|YP_513405.1| - 4.6 6.5 8.9 12 5.1 6.1 1.7 1 1 0 1 1 1 0 Phosphatidylinositol N-acetylglucosaminyltransferase DUF3816 PF12822.2 gi|89256043|ref|YP_513405.1| - 8.2 6.2 21.2 0.44 10.4 6.0 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3816) SufE PF02657.10 gi|89256044|ref|YP_513406.1| - 7.4e-35 119.3 0.0 8.5e-35 119.1 0.0 1.0 1 0 0 1 1 1 1 Fe-S metabolism associated domain HEM4 PF02602.10 gi|89256045|ref|YP_513407.1| - 4e-22 78.5 0.0 5.2e-22 78.2 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD LANC_like PF05147.8 gi|89256045|ref|YP_513407.1| - 0.029 12.9 0.3 0.045 12.3 0.2 1.3 1 1 0 1 1 1 0 Lanthionine synthetase C-like protein Hrs_helical PF12210.3 gi|89256046|ref|YP_513408.1| - 0.63 10.3 9.7 1.2 9.4 0.1 3.7 4 0 0 4 4 4 0 Hepatocyte growth factor-regulated tyrosine kinase substrate Seryl_tRNA_N PF02403.17 gi|89256046|ref|YP_513408.1| - 3 7.8 20.4 4.3 7.3 0.8 3.5 2 1 0 3 3 3 0 Seryl-tRNA synthetase N-terminal domain DUF713 PF05218.9 gi|89256046|ref|YP_513408.1| - 9 5.9 18.1 0.089 12.5 4.8 2.6 1 1 0 2 2 2 0 Protein of unknown function (DUF713) HemY_N PF07219.8 gi|89256047|ref|YP_513409.1| - 0.033 13.7 6.1 0.094 12.2 2.3 2.5 2 0 0 2 2 2 0 HemY protein N-terminus Lactamase_B PF00753.22 gi|89256048|ref|YP_513410.1| - 6.1e-26 91.2 0.2 8.1e-26 90.8 0.1 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|89256048|ref|YP_513410.1| - 2e-05 24.2 0.1 3.8e-05 23.3 0.1 1.6 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|89256048|ref|YP_513410.1| - 0.0031 17.2 0.0 0.0044 16.7 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Surp PF01805.15 gi|89256048|ref|YP_513410.1| - 0.017 14.7 0.1 4.7 6.9 0.0 2.5 2 0 0 2 2 2 0 Surp module SPOR PF05036.8 gi|89256049|ref|YP_513411.1| - 7.2e-11 42.0 0.1 2e-10 40.6 0.0 1.8 2 0 0 2 2 2 1 Sporulation related domain DUF3068 PF11271.3 gi|89256049|ref|YP_513411.1| - 0.0091 15.0 0.0 0.011 14.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3068) DUF4179 PF13786.1 gi|89256049|ref|YP_513411.1| - 0.03 14.5 1.9 0.07 13.3 1.3 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4179) MMgT PF10270.4 gi|89256049|ref|YP_513411.1| - 0.033 14.6 0.2 0.093 13.1 0.0 1.7 2 0 0 2 2 2 0 Membrane magnesium transporter DUF2500 PF10694.4 gi|89256049|ref|YP_513411.1| - 0.047 13.7 0.8 0.094 12.7 0.5 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2500) SP_C-Propep PF08999.5 gi|89256049|ref|YP_513411.1| - 0.072 12.5 0.0 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 Surfactant protein C, N terminal propeptide DUF106 PF01956.11 gi|89256049|ref|YP_513411.1| - 0.094 12.2 1.2 0.15 11.5 0.8 1.3 1 0 0 1 1 1 0 Integral membrane protein DUF106 DUF1043 PF06295.7 gi|89256049|ref|YP_513411.1| - 0.12 12.0 6.0 0.033 13.8 1.4 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1043) GntP_permease PF02447.11 gi|89256049|ref|YP_513411.1| - 0.12 10.8 0.3 0.17 10.3 0.2 1.1 1 0 0 1 1 1 0 GntP family permease Serinc PF03348.10 gi|89256049|ref|YP_513411.1| - 0.21 10.2 2.1 0.25 9.9 1.4 1.1 1 0 0 1 1 1 0 Serine incorporator (Serinc) Gastrin PF00918.12 gi|89256049|ref|YP_513411.1| - 0.23 12.2 3.1 0.32 11.8 1.8 1.6 1 1 0 1 1 1 0 Gastrin/cholecystokinin family SID-1_RNA_chan PF13965.1 gi|89256049|ref|YP_513411.1| - 0.27 9.3 5.6 0.36 8.9 3.9 1.1 1 0 0 1 1 1 0 dsRNA-gated channel SID-1 DUF1632 PF07857.7 gi|89256049|ref|YP_513411.1| - 0.33 10.1 1.1 0.55 9.4 0.7 1.3 1 0 0 1 1 1 0 CEO family (DUF1632) ARD PF03079.9 gi|89256049|ref|YP_513411.1| - 0.89 9.4 6.8 0.75 9.7 3.3 1.9 1 1 1 2 2 2 0 ARD/ARD' family OAD_gamma PF04277.8 gi|89256049|ref|YP_513411.1| - 0.97 9.8 7.6 0.2 12.0 0.5 2.7 3 0 0 3 3 3 0 Oxaloacetate decarboxylase, gamma chain DUF1510 PF07423.6 gi|89256049|ref|YP_513411.1| - 4.5 6.5 21.0 0.033 13.5 8.0 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF1510) FeoA PF04023.9 gi|89256050|ref|YP_513412.1| - 1.1e-05 25.2 0.0 1.3e-05 25.0 0.0 1.0 1 0 0 1 1 1 1 FeoA domain Peptidase_S24 PF00717.18 gi|89256052|ref|YP_513414.1| - 1.2e-05 24.8 0.2 4.3e-05 23.0 0.2 1.9 1 1 0 1 1 1 1 Peptidase S24-like HTH_3 PF01381.17 gi|89256052|ref|YP_513414.1| - 1.7e-05 24.5 0.0 2.7e-05 23.9 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|89256052|ref|YP_513414.1| - 0.033 14.2 0.0 0.064 13.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_38 PF13936.1 gi|89256052|ref|YP_513414.1| - 0.1 12.1 0.0 0.21 11.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.1 gi|89256052|ref|YP_513414.1| - 0.13 11.9 0.0 0.26 10.9 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain GnsAB PF08178.6 gi|89256053|ref|YP_513415.1| - 0.11 12.1 0.4 0.31 10.7 0.3 1.8 1 0 0 1 1 1 0 GnsA/GnsB family DNA_methylase PF00145.12 gi|89256053|ref|YP_513415.1| - 0.19 10.7 3.3 0.23 10.5 2.3 1.0 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase DUF2874 PF11396.3 gi|89256053|ref|YP_513415.1| - 1 9.3 5.0 1.2 9.1 2.0 2.2 1 1 2 3 3 3 0 Protein of unknown function (DUF2874) EamA PF00892.15 gi|89256054|ref|YP_513416.1| - 2.4e-31 108.3 45.5 4.7e-18 65.4 14.2 2.2 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|89256054|ref|YP_513416.1| - 1.4e-05 25.2 38.4 0.00026 21.1 8.1 3.8 2 2 0 2 2 2 1 Multidrug resistance efflux transporter TPT PF03151.11 gi|89256054|ref|YP_513416.1| - 4.9e-05 23.0 18.8 4.9e-05 23.0 13.0 2.9 2 1 0 2 2 2 1 Triose-phosphate Transporter family Sugar_transport PF06800.7 gi|89256054|ref|YP_513416.1| - 0.007 15.4 3.4 0.007 15.4 2.3 2.1 1 1 1 2 2 2 1 Sugar transport protein UPF0546 PF10639.4 gi|89256054|ref|YP_513416.1| - 0.31 10.8 18.7 0.65 9.8 2.0 3.3 1 1 1 3 3 3 0 Uncharacterised protein family UPF0546 Glu_synthase PF01645.12 gi|89256055|ref|YP_513417.1| - 2.9e-85 286.3 0.3 3.7e-85 286.0 0.2 1.1 1 0 0 1 1 1 1 Conserved region in glutamate synthase FMN_dh PF01070.13 gi|89256055|ref|YP_513417.1| - 0.00041 19.3 0.1 0.0011 17.9 0.0 1.6 2 0 0 2 2 2 1 FMN-dependent dehydrogenase DUF454 PF04304.8 gi|89256055|ref|YP_513417.1| - 0.26 11.3 3.9 0.59 10.2 2.7 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF454) Exonuc_V_gamma PF04257.9 gi|89256056|ref|YP_513418.1| - 3.8e-229 762.7 16.6 5.8e-229 762.1 11.5 1.2 1 0 0 1 1 1 1 Exodeoxyribonuclease V, gamma subunit FUSC_2 PF13515.1 gi|89256057|ref|YP_513419.1| - 7.9e-12 45.2 17.3 1e-11 44.8 12.0 1.2 1 0 0 1 1 1 1 Fusaric acid resistance protein-like DUF939 PF06081.6 gi|89256057|ref|YP_513419.1| - 2.9e-05 23.9 14.1 6.6e-05 22.8 9.7 1.7 1 1 0 1 1 1 1 Bacterial protein of unknown function (DUF939) AAA_4 PF04326.9 gi|89256058|ref|YP_513420.1| - 3.1e-22 79.0 1.4 3.1e-22 79.0 1.0 1.9 2 0 0 2 2 1 1 Divergent AAA domain HATPase_c_4 PF13749.1 gi|89256058|ref|YP_513420.1| - 6.8e-13 48.2 0.0 1.5e-12 47.1 0.0 1.6 1 0 0 1 1 1 1 ATP-dependent DNA helicase recG C-terminal HTH_24 PF13412.1 gi|89256058|ref|YP_513420.1| - 3.8e-11 42.1 0.2 1.4e-10 40.4 0.1 2.0 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|89256058|ref|YP_513420.1| - 2.5e-10 39.8 0.1 5.8e-10 38.6 0.1 1.7 1 0 0 1 1 1 1 HTH domain HTH_AsnC-type PF13404.1 gi|89256058|ref|YP_513420.1| - 5.3e-07 29.0 0.0 1.7e-06 27.4 0.0 1.9 2 0 0 2 2 1 1 AsnC-type helix-turn-helix domain HTH_Mga PF08280.6 gi|89256058|ref|YP_513420.1| - 5.1e-06 26.1 0.1 1.4e-05 24.7 0.1 1.8 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_20 PF12840.2 gi|89256058|ref|YP_513420.1| - 1.2e-05 24.9 0.0 2.2e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|89256058|ref|YP_513420.1| - 1.2e-05 24.8 0.0 2.7e-05 23.7 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|89256058|ref|YP_513420.1| - 1.9e-05 24.2 0.1 6.1e-05 22.6 0.0 1.9 1 0 0 1 1 1 1 MarR family HTH_DeoR PF08220.7 gi|89256058|ref|YP_513420.1| - 2.1e-05 23.9 0.1 5.1e-05 22.7 0.1 1.7 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain Rrf2 PF02082.15 gi|89256058|ref|YP_513420.1| - 0.00023 21.2 0.0 0.00052 20.0 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator Sigma70_r4_2 PF08281.7 gi|89256058|ref|YP_513420.1| - 0.00025 20.4 0.0 0.00053 19.3 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 TrmB PF01978.14 gi|89256058|ref|YP_513420.1| - 0.00074 19.1 0.0 0.0018 17.9 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|89256058|ref|YP_513420.1| - 0.0018 18.5 0.0 0.0051 17.1 0.0 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|89256058|ref|YP_513420.1| - 0.0019 17.8 0.0 0.0039 16.8 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Sigma70_r4 PF04545.11 gi|89256058|ref|YP_513420.1| - 0.0033 16.7 0.1 0.017 14.4 0.0 2.1 2 0 0 2 2 2 1 Sigma-70, region 4 AMMECR1 PF01871.12 gi|89256058|ref|YP_513420.1| - 0.0053 15.9 0.0 0.017 14.2 0.0 1.8 2 0 0 2 2 2 1 AMMECR1 HTH_23 PF13384.1 gi|89256058|ref|YP_513420.1| - 0.008 15.7 0.0 0.016 14.8 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|89256058|ref|YP_513420.1| - 0.011 15.6 0.1 0.054 13.5 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Tnp_Tc3_2 PF01498.13 gi|89256058|ref|YP_513420.1| - 0.019 14.9 0.1 0.038 14.0 0.0 1.5 1 0 0 1 1 1 0 Transposase Fe_dep_repress PF01325.14 gi|89256058|ref|YP_513420.1| - 0.02 14.8 0.0 0.043 13.7 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain RPA_C PF08784.6 gi|89256058|ref|YP_513420.1| - 0.028 14.8 0.0 0.078 13.3 0.0 1.7 1 0 0 1 1 1 0 Replication protein A C terminal SgrR_N PF12793.2 gi|89256058|ref|YP_513420.1| - 0.029 14.3 0.0 0.074 13.0 0.0 1.6 1 0 0 1 1 1 0 Sugar transport-related sRNA regulator N-term HTH_Crp_2 PF13545.1 gi|89256058|ref|YP_513420.1| - 0.032 14.0 0.0 0.07 12.9 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HrcA_DNA-bdg PF03444.10 gi|89256058|ref|YP_513420.1| - 0.04 13.3 0.0 0.094 12.1 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_13 PF11972.3 gi|89256058|ref|YP_513420.1| - 0.042 13.7 0.0 0.083 12.7 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain LexA_DNA_bind PF01726.11 gi|89256058|ref|YP_513420.1| - 0.043 13.3 0.1 0.082 12.4 0.1 1.4 1 0 0 1 1 1 0 LexA DNA binding domain HTH_34 PF13601.1 gi|89256058|ref|YP_513420.1| - 0.047 13.7 0.0 0.12 12.4 0.0 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_40 PF14493.1 gi|89256058|ref|YP_513420.1| - 0.054 13.7 0.3 0.32 11.2 0.1 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_10 PF04967.7 gi|89256058|ref|YP_513420.1| - 0.095 12.2 0.0 0.28 10.8 0.0 1.8 1 0 0 1 1 1 0 HTH DNA binding domain HTH_IclR PF09339.5 gi|89256058|ref|YP_513420.1| - 0.17 11.4 0.0 0.33 10.5 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain UvrD-helicase PF00580.16 gi|89256059|ref|YP_513421.1| - 4.3e-59 200.3 12.3 4.3e-59 200.3 8.5 4.9 3 2 0 3 3 3 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.1 gi|89256059|ref|YP_513421.1| - 3.6e-41 141.7 1.3 3.6e-41 141.7 0.9 4.7 2 2 1 3 3 3 1 UvrD-like helicase C-terminal domain UvrD_C_2 PF13538.1 gi|89256059|ref|YP_513421.1| - 2.9e-09 36.9 0.7 3.9e-07 30.1 0.1 3.8 2 1 0 2 2 2 1 UvrD-like helicase C-terminal domain AAA_19 PF13245.1 gi|89256059|ref|YP_513421.1| - 0.00017 21.2 0.0 0.00057 19.5 0.0 1.8 2 0 0 2 2 2 1 Part of AAA domain AAA_30 PF13604.1 gi|89256059|ref|YP_513421.1| - 0.0021 17.6 0.0 0.0088 15.6 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.1 gi|89256060|ref|YP_513422.1| - 2.9e-27 95.5 0.0 9.3e-27 93.8 0.0 1.7 1 1 0 1 1 1 1 AAA domain UvrD_C_2 PF13538.1 gi|89256060|ref|YP_513422.1| - 2.5e-18 66.1 0.0 1.7e-17 63.4 0.0 2.3 2 0 0 2 2 2 1 UvrD-like helicase C-terminal domain AAA_11 PF13086.1 gi|89256060|ref|YP_513422.1| - 1.3e-17 64.2 2.9 2.6e-08 33.7 0.5 2.7 1 1 1 2 2 2 2 AAA domain Viral_helicase1 PF01443.13 gi|89256060|ref|YP_513422.1| - 1.2e-16 60.9 1.0 3.8e-06 26.5 0.0 3.3 3 0 0 3 3 3 3 Viral (Superfamily 1) RNA helicase AAA_19 PF13245.1 gi|89256060|ref|YP_513422.1| - 7e-15 54.5 0.6 2.5e-14 52.7 0.4 2.0 1 1 0 1 1 1 1 Part of AAA domain Helicase_RecD PF05127.9 gi|89256060|ref|YP_513422.1| - 5.8e-11 42.3 0.1 1.7e-10 40.8 0.1 1.8 1 0 0 1 1 1 1 Helicase DUF2075 PF09848.4 gi|89256060|ref|YP_513422.1| - 5.4e-09 35.4 0.1 7.2e-08 31.7 0.1 2.4 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) UvrD-helicase PF00580.16 gi|89256060|ref|YP_513422.1| - 1e-08 34.8 11.6 9.9e-08 31.6 0.7 3.4 2 1 1 3 3 3 2 UvrD/REP helicase N-terminal domain AAA_22 PF13401.1 gi|89256060|ref|YP_513422.1| - 2.5e-08 34.1 0.6 8.1e-08 32.4 0.0 2.1 2 0 0 2 2 1 1 AAA domain ResIII PF04851.10 gi|89256060|ref|YP_513422.1| - 9.4e-06 25.5 1.7 9.4e-06 25.5 1.1 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit PhoH PF02562.11 gi|89256060|ref|YP_513422.1| - 4.6e-05 22.7 2.6 0.066 12.4 0.1 3.3 3 0 0 3 3 3 2 PhoH-like protein NACHT PF05729.7 gi|89256060|ref|YP_513422.1| - 0.00029 20.5 0.1 0.00068 19.3 0.0 1.7 2 0 0 2 2 1 1 NACHT domain DEAD PF00270.24 gi|89256060|ref|YP_513422.1| - 0.00041 19.8 0.7 0.00041 19.8 0.5 2.1 3 0 0 3 3 3 1 DEAD/DEAH box helicase UvrD_C PF13361.1 gi|89256060|ref|YP_513422.1| - 0.00055 19.5 0.0 0.00055 19.5 0.0 3.8 3 2 0 3 3 3 1 UvrD-like helicase C-terminal domain Flavi_DEAD PF07652.9 gi|89256060|ref|YP_513422.1| - 0.0035 17.1 0.1 0.059 13.1 0.0 2.3 2 0 0 2 2 2 1 Flavivirus DEAD domain TIP49 PF06068.8 gi|89256060|ref|YP_513422.1| - 0.0051 15.5 0.5 0.013 14.2 0.0 1.9 2 0 0 2 2 2 1 TIP49 C-terminus AAA_12 PF13087.1 gi|89256060|ref|YP_513422.1| - 0.0058 16.0 3.2 0.014 14.7 0.0 3.1 3 1 0 3 3 3 1 AAA domain T2SE PF00437.15 gi|89256060|ref|YP_513422.1| - 0.0069 15.3 0.1 0.016 14.0 0.0 1.6 1 0 0 1 1 1 1 Type II/IV secretion system protein Terminase_6 PF03237.10 gi|89256060|ref|YP_513422.1| - 0.0092 14.7 0.0 0.016 13.9 0.0 1.4 1 0 0 1 1 1 1 Terminase-like family AAA_25 PF13481.1 gi|89256060|ref|YP_513422.1| - 0.0099 15.2 0.0 0.021 14.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|89256060|ref|YP_513422.1| - 0.013 16.3 0.3 0.15 12.8 0.0 2.8 3 0 0 3 3 2 0 AAA domain AAA_28 PF13521.1 gi|89256060|ref|YP_513422.1| - 0.014 15.3 0.1 0.036 14.0 0.1 1.7 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|89256060|ref|YP_513422.1| - 0.018 14.4 2.2 0.08 12.3 0.5 2.4 1 1 1 2 2 2 0 SRP54-type protein, GTPase domain AAA_16 PF13191.1 gi|89256060|ref|YP_513422.1| - 0.026 14.5 0.0 0.062 13.2 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain TK PF00265.13 gi|89256060|ref|YP_513422.1| - 0.031 13.8 1.3 0.27 10.7 0.3 2.7 1 1 1 2 2 2 0 Thymidine kinase AAA_33 PF13671.1 gi|89256060|ref|YP_513422.1| - 0.051 13.4 0.0 0.12 12.2 0.0 1.7 1 0 0 1 1 1 0 AAA domain CbiA PF01656.18 gi|89256060|ref|YP_513422.1| - 0.071 12.5 3.2 0.27 10.6 2.2 2.0 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain NTPase_1 PF03266.10 gi|89256060|ref|YP_513422.1| - 0.18 11.5 3.8 3 7.5 2.7 2.7 1 1 0 1 1 1 0 NTPase AAA_18 PF13238.1 gi|89256060|ref|YP_513422.1| - 0.26 11.5 0.0 0.26 11.5 0.0 2.6 3 0 0 3 3 3 0 AAA domain AAA PF00004.24 gi|89256060|ref|YP_513422.1| - 0.29 11.3 4.3 5.2 7.2 3.0 2.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Pan_kinase PF03309.9 gi|89256061|ref|YP_513423.1| - 7e-55 185.7 0.0 8.2e-55 185.5 0.0 1.0 1 0 0 1 1 1 1 Type III pantothenate kinase DUF1786 PF08735.5 gi|89256061|ref|YP_513423.1| - 0.023 13.8 0.0 1.6 7.8 0.0 2.2 2 0 0 2 2 2 0 Putative pyruvate format-lyase activating enzyme (DUF1786) FtsA PF14450.1 gi|89256061|ref|YP_513423.1| - 0.043 13.6 1.3 5.1 6.9 0.1 3.0 2 1 1 3 3 3 0 Cell division protein FtsA ActA PF05058.7 gi|89256061|ref|YP_513423.1| - 0.15 10.0 0.0 0.19 9.6 0.0 1.1 1 0 0 1 1 1 0 ActA Protein Asp_decarbox PF02261.11 gi|89256062|ref|YP_513424.1| - 6.1e-39 132.2 0.3 6.6e-39 132.0 0.2 1.0 1 0 0 1 1 1 1 Aspartate decarboxylase Pantoate_ligase PF02569.10 gi|89256063|ref|YP_513425.1| - 3.9e-79 265.3 0.4 1.4e-76 256.9 0.1 2.0 1 1 1 2 2 2 2 Pantoate-beta-alanine ligase Cactin_mid PF10312.4 gi|89256063|ref|YP_513425.1| - 0.0049 16.1 0.3 0.011 15.0 0.2 1.5 1 0 0 1 1 1 1 Conserved mid region of cactin FAD_syn PF06574.7 gi|89256063|ref|YP_513425.1| - 0.0049 16.4 0.0 0.017 14.7 0.0 1.8 2 0 0 2 2 2 1 FAD synthetase T4SS PF07996.6 gi|89256063|ref|YP_513425.1| - 0.47 10.2 3.9 0.15 11.8 0.2 1.9 2 0 0 2 2 2 0 Type IV secretion system proteins Pantoate_transf PF02548.10 gi|89256064|ref|YP_513426.1| - 2.4e-106 354.6 1.2 2.8e-106 354.4 0.8 1.0 1 0 0 1 1 1 1 Ketopantoate hydroxymethyltransferase PEP_mutase PF13714.1 gi|89256064|ref|YP_513426.1| - 6.4e-06 25.5 0.2 2.2e-05 23.7 0.2 1.7 1 1 0 1 1 1 1 Phosphoenolpyruvate phosphomutase HrpB2 PF09487.5 gi|89256064|ref|YP_513426.1| - 0.0088 16.2 0.4 0.016 15.4 0.3 1.4 1 0 0 1 1 1 1 Bacterial type III secretion protein (HrpB2) Asp_Glu_race PF01177.17 gi|89256064|ref|YP_513426.1| - 0.056 13.3 0.0 0.12 12.2 0.0 1.7 1 0 0 1 1 1 0 Asp/Glu/Hydantoin racemase DUF681 PF05080.7 gi|89256064|ref|YP_513426.1| - 0.3 11.5 1.2 21 5.6 0.1 2.3 1 1 0 2 2 2 0 Protein of unknown function (DUF681) DUF2520 PF10728.4 gi|89256065|ref|YP_513427.1| - 6.8e-13 48.2 0.0 1.1e-12 47.5 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF2520) DNA_ligase_aden PF01653.13 gi|89256066|ref|YP_513428.1| - 3.1e-102 341.7 0.2 4.3e-102 341.2 0.1 1.2 1 0 0 1 1 1 1 NAD-dependent DNA ligase adenylation domain DNA_ligase_OB PF03120.11 gi|89256066|ref|YP_513428.1| - 1.3e-31 108.0 2.8 3.2e-31 106.8 1.9 1.7 1 0 0 1 1 1 1 NAD-dependent DNA ligase OB-fold domain HHH_2 PF12826.2 gi|89256066|ref|YP_513428.1| - 6.1e-18 64.4 1.9 1.4e-17 63.2 0.2 2.6 4 0 0 4 4 4 1 Helix-hairpin-helix motif BRCT PF00533.21 gi|89256066|ref|YP_513428.1| - 6.2e-14 51.8 0.1 1e-12 48.0 0.1 2.5 2 0 0 2 2 2 1 BRCA1 C Terminus (BRCT) domain HHH_5 PF14520.1 gi|89256066|ref|YP_513428.1| - 6.9e-13 48.5 0.0 1.2e-05 25.3 0.0 2.7 2 0 0 2 2 2 2 Helix-hairpin-helix domain DNA_ligase_ZBD PF03119.11 gi|89256066|ref|YP_513428.1| - 5.3e-10 38.8 1.0 1.3e-09 37.5 0.7 1.7 1 0 0 1 1 1 1 NAD-dependent DNA ligase C4 zinc finger domain PTCB-BRCT PF12738.2 gi|89256066|ref|YP_513428.1| - 2.8e-08 33.4 0.1 1.6e-07 31.0 0.1 2.3 2 0 0 2 2 2 1 twin BRCT domain DUF830 PF05708.7 gi|89256067|ref|YP_513429.1| - 4.6e-14 52.7 0.1 5.3e-14 52.4 0.1 1.0 1 0 0 1 1 1 1 Orthopoxvirus protein of unknown function (DUF830) NLPC_P60 PF00877.14 gi|89256067|ref|YP_513429.1| - 0.021 14.6 0.1 0.22 11.3 0.0 2.2 2 1 0 2 2 2 0 NlpC/P60 family LRAT PF04970.8 gi|89256067|ref|YP_513429.1| - 0.081 12.8 0.0 0.15 11.9 0.0 1.5 1 1 0 1 1 1 0 Lecithin retinol acyltransferase DDE_3 PF13358.1 gi|89256068|ref|YP_513430.1| - 1.7e-31 108.9 0.0 2.8e-31 108.2 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.11 gi|89256068|ref|YP_513430.1| - 1.5e-07 31.0 0.2 1.1e-06 28.3 0.1 2.1 2 0 0 2 2 2 1 Transposase DDE_1 PF03184.14 gi|89256068|ref|YP_513430.1| - 5.8e-07 28.8 0.1 9.5e-07 28.1 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_28 PF13518.1 gi|89256068|ref|YP_513430.1| - 0.00058 19.8 0.0 0.0018 18.2 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain rve PF00665.21 gi|89256068|ref|YP_513430.1| - 0.00072 19.6 0.0 0.0013 18.7 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.1 gi|89256068|ref|YP_513430.1| - 0.0087 15.6 0.0 0.029 14.0 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.1 gi|89256068|ref|YP_513430.1| - 0.02 15.0 0.0 0.032 14.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix DDE_Tnp_ISAZ013 PF07592.6 gi|89256068|ref|YP_513430.1| - 0.039 12.6 0.6 0.32 9.7 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain BPD_transp_1 PF00528.17 gi|89256069|ref|YP_513431.1| - 2.5e-24 85.8 13.4 2.5e-24 85.8 9.3 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component UPF0154 PF03672.8 gi|89256069|ref|YP_513431.1| - 0.066 12.8 0.8 0.066 12.8 0.6 2.0 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0154) BPD_transp_1 PF00528.17 gi|89256070|ref|YP_513432.1| - 2.4e-14 53.2 16.2 2.4e-14 53.2 11.2 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF1011 PF06237.7 gi|89256070|ref|YP_513432.1| - 0.074 12.9 5.5 0.061 13.2 1.7 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1011) ABC_tran PF00005.22 gi|89256071|ref|YP_513433.1| - 9e-35 119.9 0.0 3.1e-34 118.2 0.0 1.8 2 0 0 2 2 2 1 ABC transporter TOBE_2 PF08402.5 gi|89256071|ref|YP_513433.1| - 1.3e-14 53.8 0.0 2.9e-14 52.8 0.0 1.6 1 0 0 1 1 1 1 TOBE domain AAA_21 PF13304.1 gi|89256071|ref|YP_513433.1| - 2.3e-11 44.1 2.3 1.6e-06 28.3 0.0 3.0 2 1 1 3 3 3 2 AAA domain SMC_N PF02463.14 gi|89256071|ref|YP_513433.1| - 2.8e-06 26.7 1.4 1.2e-05 24.7 1.0 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|89256071|ref|YP_513433.1| - 0.001 18.5 0.0 0.0073 15.8 0.0 2.1 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|89256071|ref|YP_513433.1| - 0.0017 18.4 0.2 0.6 10.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain Miro PF08477.8 gi|89256071|ref|YP_513433.1| - 0.019 15.4 0.1 0.068 13.6 0.1 2.2 1 1 0 1 1 1 0 Miro-like protein ABC_ATPase PF09818.4 gi|89256071|ref|YP_513433.1| - 0.034 12.7 0.1 1.1 7.7 0.0 2.3 2 0 0 2 2 2 0 Predicted ATPase of the ABC class SbcCD_C PF13558.1 gi|89256071|ref|YP_513433.1| - 0.044 13.6 0.0 0.2 11.5 0.0 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_16 PF13191.1 gi|89256071|ref|YP_513433.1| - 0.057 13.4 0.9 0.21 11.5 0.5 1.9 1 1 0 1 1 1 0 AAA ATPase domain AAA_10 PF12846.2 gi|89256071|ref|YP_513433.1| - 0.064 12.6 0.2 0.15 11.5 0.1 1.5 1 0 0 1 1 1 0 AAA-like domain AAA_28 PF13521.1 gi|89256071|ref|YP_513433.1| - 0.065 13.1 0.0 0.13 12.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|89256071|ref|YP_513433.1| - 0.066 12.4 0.0 0.14 11.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|89256071|ref|YP_513433.1| - 0.086 13.1 0.6 2.9 8.1 0.0 2.8 3 0 0 3 3 3 0 AAA domain AAA_25 PF13481.1 gi|89256071|ref|YP_513433.1| - 0.092 12.1 0.0 0.59 9.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|89256071|ref|YP_513433.1| - 0.095 12.3 0.1 0.9 9.1 0.2 2.2 2 0 0 2 2 2 0 NACHT domain Spore_GerQ PF09671.5 gi|89256071|ref|YP_513433.1| - 0.11 12.2 0.0 0.28 10.8 0.0 1.7 1 0 0 1 1 1 0 Spore coat protein (Spore_GerQ) DDE_3 PF13358.1 gi|89256072|ref|YP_513434.1| - 1.7e-31 108.9 0.0 2.8e-31 108.2 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.11 gi|89256072|ref|YP_513434.1| - 1.5e-07 31.0 0.2 1.1e-06 28.3 0.1 2.1 2 0 0 2 2 2 1 Transposase DDE_1 PF03184.14 gi|89256072|ref|YP_513434.1| - 5.8e-07 28.8 0.1 9.5e-07 28.1 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_28 PF13518.1 gi|89256072|ref|YP_513434.1| - 0.00058 19.8 0.0 0.0018 18.2 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain rve PF00665.21 gi|89256072|ref|YP_513434.1| - 0.00072 19.6 0.0 0.0013 18.7 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.1 gi|89256072|ref|YP_513434.1| - 0.0087 15.6 0.0 0.029 14.0 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.1 gi|89256072|ref|YP_513434.1| - 0.02 15.0 0.0 0.032 14.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix DDE_Tnp_ISAZ013 PF07592.6 gi|89256072|ref|YP_513434.1| - 0.039 12.6 0.6 0.32 9.7 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain DUF2807 PF10988.3 gi|89256073|ref|YP_513435.1| - 0.037 13.5 0.0 0.042 13.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2807) LPAM_1 PF08139.7 gi|89256073|ref|YP_513435.1| - 0.8 10.0 3.8 1.3 9.3 2.7 1.3 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site NAD_synthase PF02540.12 gi|89256074|ref|YP_513436.1| - 1.3e-75 253.4 0.0 1.5e-75 253.1 0.0 1.0 1 0 0 1 1 1 1 NAD synthase QueC PF06508.8 gi|89256074|ref|YP_513436.1| - 4.2e-07 29.4 0.2 6.7e-05 22.2 0.1 2.4 2 1 0 2 2 2 2 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.11 gi|89256074|ref|YP_513436.1| - 7.9e-06 24.6 0.0 2.1e-05 23.2 0.0 1.7 2 0 0 2 2 2 1 tRNA methyl transferase ThiI PF02568.9 gi|89256074|ref|YP_513436.1| - 4.9e-05 22.8 0.0 0.0001 21.8 0.0 1.5 2 0 0 2 2 2 1 Thiamine biosynthesis protein (ThiI) Asn_synthase PF00733.16 gi|89256074|ref|YP_513436.1| - 0.0016 17.9 0.0 0.0022 17.5 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase DUF3530 PF12048.3 gi|89256074|ref|YP_513436.1| - 0.017 14.1 0.1 0.023 13.6 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3530) PAPS_reduct PF01507.14 gi|89256074|ref|YP_513436.1| - 0.017 14.9 0.0 0.44 10.3 0.0 2.2 1 1 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family OEP PF02321.13 gi|89256075|ref|YP_513437.1| - 3.6e-40 137.5 22.2 5.9e-24 84.6 2.3 2.1 2 0 0 2 2 2 2 Outer membrane efflux protein DUF4419 PF14388.1 gi|89256075|ref|YP_513437.1| - 0.086 12.0 5.0 1.3 8.2 0.3 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4419) HlyD PF00529.15 gi|89256076|ref|YP_513438.1| - 1.6e-42 145.9 0.6 1.9e-42 145.6 0.4 1.0 1 0 0 1 1 1 1 HlyD family secretion protein HlyD_2 PF12700.2 gi|89256076|ref|YP_513438.1| - 8.4e-22 77.7 8.6 1.3e-21 77.1 6.0 1.2 1 0 0 1 1 1 1 HlyD family secretion protein HlyD_3 PF13437.1 gi|89256076|ref|YP_513438.1| - 1.4e-20 73.6 0.6 3.4e-17 62.6 0.0 2.6 2 0 0 2 2 2 2 HlyD family secretion protein Biotin_lipoyl_2 PF13533.1 gi|89256076|ref|YP_513438.1| - 2e-13 49.7 4.4 2.5e-12 46.2 0.3 3.3 3 0 0 3 3 3 1 Biotin-lipoyl like Biotin_lipoyl PF00364.17 gi|89256076|ref|YP_513438.1| - 0.00067 19.2 0.2 2.1 8.0 0.0 3.2 4 0 0 4 4 4 2 Biotin-requiring enzyme Fez1 PF06818.10 gi|89256076|ref|YP_513438.1| - 0.016 15.2 2.6 0.024 14.6 1.8 1.2 1 0 0 1 1 1 0 Fez1 FliJ PF02050.11 gi|89256076|ref|YP_513438.1| - 0.046 13.7 1.3 0.046 13.7 0.9 2.3 1 1 1 2 2 2 0 Flagellar FliJ protein OEP PF02321.13 gi|89256076|ref|YP_513438.1| - 0.065 12.8 19.0 0.22 11.0 10.0 2.3 1 1 1 2 2 2 0 Outer membrane efflux protein DUF2316 PF10078.4 gi|89256076|ref|YP_513438.1| - 0.087 12.8 0.5 0.18 11.8 0.3 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2316) Flagellin_C PF00700.16 gi|89256076|ref|YP_513438.1| - 0.32 11.1 7.0 1.2 9.2 2.2 2.5 2 0 0 2 2 2 0 Bacterial flagellin C-terminal helical region DUF2564 PF10819.3 gi|89256076|ref|YP_513438.1| - 3.5 7.8 7.7 2.6 8.2 0.0 2.9 1 1 2 3 3 3 0 Protein of unknown function (DUF2564) DUF4398 PF14346.1 gi|89256076|ref|YP_513438.1| - 7.2 6.7 14.2 30 4.7 9.8 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4398) MFS_1 PF07690.11 gi|89256077|ref|YP_513439.1| - 2.5e-52 177.7 51.5 5.3e-51 173.3 32.1 2.4 2 1 0 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.8 gi|89256077|ref|YP_513439.1| - 4.9e-06 24.9 25.5 0.0024 16.0 3.3 2.2 2 0 0 2 2 2 2 Transmembrane secretion effector OATP PF03137.15 gi|89256077|ref|YP_513439.1| - 0.0057 14.7 1.8 0.0057 14.7 1.2 3.6 2 1 2 4 4 4 3 Organic Anion Transporter Polypeptide (OATP) family HTH_18 PF12833.2 gi|89256078|ref|YP_513440.1| - 1.1e-19 70.3 0.3 1.6e-19 69.7 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.18 gi|89256078|ref|YP_513440.1| - 6e-16 57.7 0.2 8.5e-09 34.9 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family AraC_binding PF02311.14 gi|89256078|ref|YP_513440.1| - 0.0019 17.8 0.1 0.0047 16.6 0.0 1.6 2 0 0 2 2 2 1 AraC-like ligand binding domain MannoseP_isomer PF01050.13 gi|89256078|ref|YP_513440.1| - 0.15 11.6 0.2 0.31 10.6 0.2 1.4 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase AMP-binding PF00501.23 gi|89256079|ref|YP_513441.1| - 1.6e-92 310.0 0.0 2.1e-92 309.7 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|89256079|ref|YP_513441.1| - 1.8e-13 51.1 0.1 6.1e-13 49.5 0.0 1.9 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain PTR2 PF00854.16 gi|89256080|ref|YP_513442.1| - 1.3e-31 109.7 27.6 1.3e-31 109.7 19.1 2.2 1 1 1 2 2 2 1 POT family MFS_1 PF07690.11 gi|89256080|ref|YP_513442.1| - 8.9e-18 64.1 52.5 5.1e-15 55.0 21.2 2.4 1 1 1 2 2 2 2 Major Facilitator Superfamily Methyltrans_RNA PF04452.9 gi|89256081|ref|YP_513443.1| - 2.2e-60 203.5 0.0 2.5e-60 203.4 0.0 1.0 1 0 0 1 1 1 1 RNA methyltransferase LktC PF06261.6 gi|89256081|ref|YP_513443.1| - 0.017 14.8 0.0 0.05 13.3 0.0 1.8 1 0 0 1 1 1 0 Actinobacillus actinomycetemcomitans leukotoxin activator LktC NdhN PF11909.3 gi|89256081|ref|YP_513443.1| - 0.15 11.3 0.0 2.3 7.5 0.0 2.1 2 0 0 2 2 2 0 NADH-quinone oxidoreductase cyanobacterial subunit N DUF445 PF04286.7 gi|89256082|ref|YP_513444.1| - 1.8e-20 73.8 2.2 4.4e-11 42.9 0.0 2.1 1 1 1 2 2 2 2 Protein of unknown function (DUF445) DUF4368 PF14287.1 gi|89256082|ref|YP_513444.1| - 0.034 13.9 2.0 0.041 13.7 0.2 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4368) ARL2_Bind_BART PF11527.3 gi|89256082|ref|YP_513444.1| - 0.17 11.6 2.1 1.1 9.0 0.1 2.7 1 1 1 2 2 2 0 The ARF-like 2 binding protein BART DUF3647 PF12363.3 gi|89256082|ref|YP_513444.1| - 0.2 11.7 1.8 6 6.9 0.1 2.6 2 1 1 3 3 3 0 Phage protein COMPASS-Shg1 PF05205.7 gi|89256082|ref|YP_513444.1| - 0.47 10.7 2.9 0.37 11.0 0.5 1.9 2 1 0 2 2 2 0 COMPASS (Complex proteins associated with Set1p) component shg1 EcoR124_C PF12008.3 gi|89256082|ref|YP_513444.1| - 0.51 9.4 6.4 3 6.9 0.1 2.1 1 1 1 2 2 2 0 Type I restriction and modification enzyme - subunit R C terminal MCE PF02470.15 gi|89256084|ref|YP_513446.1| - 1.9e-12 46.9 1.3 3.5e-12 46.1 0.8 1.5 1 1 0 1 1 1 1 mce related protein Fib_alpha PF08702.5 gi|89256084|ref|YP_513446.1| - 0.019 15.1 1.6 0.019 15.1 1.1 1.6 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family Snapin_Pallidin PF14712.1 gi|89256084|ref|YP_513446.1| - 0.022 15.0 1.0 0.57 10.5 0.1 2.3 2 0 0 2 2 2 0 Snapin/Pallidin SlyX PF04102.7 gi|89256084|ref|YP_513446.1| - 0.064 13.6 0.0 0.28 11.6 0.0 1.9 2 0 0 2 2 2 0 SlyX Baculo_PEP_C PF04513.7 gi|89256084|ref|YP_513446.1| - 0.29 10.9 5.7 0.52 10.1 3.9 1.6 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus YajC PF02699.10 gi|89256084|ref|YP_513446.1| - 1.7 8.3 5.1 4.5 7.0 3.6 1.7 1 1 0 1 1 1 0 Preprotein translocase subunit ABC_tran PF00005.22 gi|89256085|ref|YP_513447.1| - 6.1e-25 88.1 0.0 9.8e-25 87.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|89256085|ref|YP_513447.1| - 1.6e-12 47.9 0.4 1.3e-07 31.8 0.1 2.2 1 1 1 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|89256085|ref|YP_513447.1| - 6.4e-05 23.1 0.1 0.0022 18.1 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|89256085|ref|YP_513447.1| - 0.00022 20.7 0.3 0.034 13.5 0.1 2.3 1 1 1 2 2 2 1 AAA-like domain SMC_N PF02463.14 gi|89256085|ref|YP_513447.1| - 0.00058 19.1 0.1 0.0031 16.7 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA PF00004.24 gi|89256085|ref|YP_513447.1| - 0.0016 18.6 0.3 0.047 13.8 0.2 2.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|89256085|ref|YP_513447.1| - 0.0034 17.4 0.0 0.0063 16.5 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain NACHT PF05729.7 gi|89256085|ref|YP_513447.1| - 0.0041 16.7 0.1 0.0082 15.8 0.0 1.5 1 0 0 1 1 1 1 NACHT domain Arch_ATPase PF01637.13 gi|89256085|ref|YP_513447.1| - 0.0042 16.8 0.3 0.012 15.3 0.2 1.9 1 1 0 1 1 1 1 Archaeal ATPase AAA_17 PF13207.1 gi|89256085|ref|YP_513447.1| - 0.0052 17.6 0.1 0.018 15.8 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|89256085|ref|YP_513447.1| - 0.0056 16.5 0.1 0.029 14.2 0.0 2.2 2 1 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|89256085|ref|YP_513447.1| - 0.0077 16.5 0.2 0.021 15.1 0.0 1.7 2 0 0 2 2 1 1 AAA domain AAA_28 PF13521.1 gi|89256085|ref|YP_513447.1| - 0.012 15.6 0.0 0.04 13.8 0.0 1.7 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|89256085|ref|YP_513447.1| - 0.012 14.8 0.0 0.017 14.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_15 PF13175.1 gi|89256085|ref|YP_513447.1| - 0.013 14.5 0.6 0.022 13.7 0.1 1.7 2 1 1 3 3 3 0 AAA ATPase domain G-alpha PF00503.15 gi|89256085|ref|YP_513447.1| - 0.015 14.0 0.0 0.022 13.4 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit ATP-synt_ab PF00006.20 gi|89256085|ref|YP_513447.1| - 0.029 13.8 0.0 0.041 13.3 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_18 PF13238.1 gi|89256085|ref|YP_513447.1| - 0.033 14.4 0.0 0.078 13.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|89256085|ref|YP_513447.1| - 0.049 12.7 0.0 1.4 7.9 0.0 2.2 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_29 PF13555.1 gi|89256085|ref|YP_513447.1| - 0.052 13.0 0.0 0.11 12.0 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain PduV-EutP PF10662.4 gi|89256085|ref|YP_513447.1| - 0.055 12.9 0.1 0.12 11.9 0.1 1.6 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation NB-ARC PF00931.17 gi|89256085|ref|YP_513447.1| - 0.071 11.9 0.0 0.13 11.1 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain AAA_5 PF07728.9 gi|89256085|ref|YP_513447.1| - 0.077 12.7 0.1 0.26 10.9 0.0 2.0 2 0 0 2 2 1 0 AAA domain (dynein-related subfamily) Viral_helicase1 PF01443.13 gi|89256085|ref|YP_513447.1| - 0.078 12.4 0.0 0.12 11.8 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase KxDL PF10241.4 gi|89256085|ref|YP_513447.1| - 0.08 12.8 0.0 0.17 11.7 0.0 1.6 1 0 0 1 1 1 0 Uncharacterized conserved protein AAA_25 PF13481.1 gi|89256085|ref|YP_513447.1| - 0.081 12.3 0.0 0.25 10.7 0.0 1.7 2 0 0 2 2 2 0 AAA domain MobB PF03205.9 gi|89256085|ref|YP_513447.1| - 0.086 12.5 0.1 0.21 11.2 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B DUF815 PF05673.8 gi|89256085|ref|YP_513447.1| - 0.099 11.5 1.1 0.97 8.3 0.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF815) Adeno_IVa2 PF02456.10 gi|89256085|ref|YP_513447.1| - 0.1 11.2 3.2 0.2 10.2 0.0 2.3 2 1 1 3 3 3 0 Adenovirus IVa2 protein PRK PF00485.13 gi|89256085|ref|YP_513447.1| - 0.11 12.0 0.2 0.26 10.8 0.0 1.8 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family RNA_helicase PF00910.17 gi|89256085|ref|YP_513447.1| - 0.12 12.5 0.6 0.28 11.3 0.0 1.9 2 1 0 2 2 1 0 RNA helicase AAA_33 PF13671.1 gi|89256085|ref|YP_513447.1| - 0.17 11.7 0.0 0.22 11.3 0.0 1.5 1 1 0 1 1 1 0 AAA domain Permease PF02405.11 gi|89256086|ref|YP_513448.1| - 4.9e-67 225.5 16.4 6.6e-67 225.1 11.4 1.2 1 0 0 1 1 1 1 Permease STAS PF01740.16 gi|89256086|ref|YP_513448.1| - 0.016 14.6 0.2 0.048 13.0 0.1 1.8 1 1 0 1 1 1 0 STAS domain Alpha_kinase PF02816.13 gi|89256086|ref|YP_513448.1| - 0.1 12.2 0.2 0.16 11.6 0.1 1.2 1 0 0 1 1 1 0 Alpha-kinase family Lysis_S PF04971.7 gi|89256086|ref|YP_513448.1| - 0.37 10.5 2.5 2.9 7.6 0.0 2.5 2 0 0 2 2 2 0 Lysis protein S Glucosaminidase PF01832.15 gi|89256087|ref|YP_513449.1| - 9.4e-19 67.8 0.7 1.9e-18 66.8 0.0 1.8 2 1 0 2 2 2 1 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase PseudoU_synth_2 PF00849.17 gi|89256088|ref|YP_513450.1| - 3.3e-35 121.3 0.1 5.8e-35 120.5 0.0 1.4 1 0 0 1 1 1 1 RNA pseudouridylate synthase S4 PF01479.20 gi|89256088|ref|YP_513450.1| - 9.5e-06 24.9 0.0 1.8e-05 24.0 0.0 1.5 1 0 0 1 1 1 1 S4 domain YfiO PF13525.1 gi|89256089|ref|YP_513451.1| - 6.5e-50 169.4 10.6 8.2e-50 169.0 7.1 1.3 1 1 0 1 1 1 1 Outer membrane lipoprotein TPR_18 PF13512.1 gi|89256089|ref|YP_513451.1| - 5.7e-28 97.7 13.2 5.1e-26 91.3 4.5 2.1 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_16 PF13432.1 gi|89256089|ref|YP_513451.1| - 5.9e-12 45.9 0.4 2.2e-05 25.0 0.1 2.9 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_6 PF13174.1 gi|89256089|ref|YP_513451.1| - 2.3e-09 37.1 11.8 0.042 14.3 0.2 5.1 5 1 0 5 5 5 3 Tetratricopeptide repeat TPR_19 PF14559.1 gi|89256089|ref|YP_513451.1| - 6.2e-08 32.8 0.6 0.00023 21.4 0.1 3.2 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_11 PF13414.1 gi|89256089|ref|YP_513451.1| - 3.2e-06 26.6 2.8 0.046 13.3 0.2 3.4 3 0 0 3 3 3 2 TPR repeat Apc3 PF12895.2 gi|89256089|ref|YP_513451.1| - 1.1e-05 25.4 2.2 0.00021 21.3 0.1 2.6 2 1 1 3 3 3 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_14 PF13428.1 gi|89256089|ref|YP_513451.1| - 0.00037 20.8 0.1 2.3 9.1 0.0 4.2 3 1 1 4 4 4 1 Tetratricopeptide repeat TPR_12 PF13424.1 gi|89256089|ref|YP_513451.1| - 0.0056 16.5 5.4 0.025 14.5 0.5 3.5 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_1 PF00515.23 gi|89256089|ref|YP_513451.1| - 0.0073 15.8 14.2 0.065 12.8 0.1 4.5 5 0 0 5 5 4 1 Tetratricopeptide repeat TPR_2 PF07719.12 gi|89256089|ref|YP_513451.1| - 0.037 13.9 16.4 0.23 11.4 0.1 4.8 6 0 0 6 6 6 0 Tetratricopeptide repeat RPN7 PF10602.4 gi|89256089|ref|YP_513451.1| - 0.048 13.0 0.1 0.091 12.1 0.1 1.4 1 0 0 1 1 1 0 26S proteasome subunit RPN7 TPR_8 PF13181.1 gi|89256089|ref|YP_513451.1| - 4.3 7.3 9.5 6.2 6.8 0.0 4.0 5 0 0 5 5 4 0 Tetratricopeptide repeat FAD_binding_4 PF01565.18 gi|89256090|ref|YP_513452.1| - 1.1e-19 70.2 0.8 1.8e-19 69.6 0.6 1.3 1 0 0 1 1 1 1 FAD binding domain BBE PF08031.7 gi|89256090|ref|YP_513452.1| - 1.8e-11 43.7 2.2 1.6e-10 40.6 0.5 2.7 2 0 0 2 2 2 1 Berberine and berberine like HrpA_pilin PF09589.5 gi|89256091|ref|YP_513453.1| - 4.7 7.6 9.3 0.33 11.3 1.4 2.7 3 0 0 3 3 3 0 HrpA pilus formation protein SHMT PF00464.14 gi|89256092|ref|YP_513454.1| - 2.4e-174 579.3 0.4 2.8e-174 579.1 0.3 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Beta_elim_lyase PF01212.16 gi|89256092|ref|YP_513454.1| - 0.0002 20.6 0.0 0.0004 19.6 0.0 1.4 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|89256092|ref|YP_513454.1| - 0.00083 18.1 0.0 0.0046 15.7 0.0 1.9 2 0 0 2 2 2 1 Aminotransferase class-V DUF3168 PF11367.3 gi|89256092|ref|YP_513454.1| - 0.047 13.8 0.1 0.33 11.1 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3168) DUF615 PF04751.9 gi|89256093|ref|YP_513455.1| - 1.5e-42 144.9 5.8 1.7e-42 144.7 4.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF615) DUF433 PF04255.9 gi|89256093|ref|YP_513455.1| - 0.047 13.1 0.0 2 7.9 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF433) YxiJ PF14176.1 gi|89256093|ref|YP_513455.1| - 0.068 13.2 3.0 0.52 10.4 0.0 2.6 2 1 1 3 3 3 0 YxiJ-like protein DUF3860 PF12976.2 gi|89256093|ref|YP_513455.1| - 0.082 12.7 0.3 0.24 11.2 0.2 1.8 1 0 0 1 1 1 0 Domain of Unknown Function with PDB structure (DUF3860) DUF3983 PF13137.1 gi|89256093|ref|YP_513455.1| - 0.21 11.2 1.2 0.53 9.9 0.8 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3983) CemA PF03040.9 gi|89256093|ref|YP_513455.1| - 0.27 10.8 5.1 0.21 11.1 2.6 1.6 1 1 0 1 1 1 0 CemA family PhoU PF01895.14 gi|89256093|ref|YP_513455.1| - 0.31 11.5 8.9 4.1 7.9 0.5 3.2 1 1 2 3 3 3 0 PhoU domain 5_3_exonuc PF01367.15 gi|89256093|ref|YP_513455.1| - 0.54 10.5 5.8 13 6.0 0.2 3.0 1 1 2 3 3 3 0 5'-3' exonuclease, C-terminal SAM fold O-antigen_lig PF13425.1 gi|89256095|ref|YP_513457.1| - 4.3e-14 52.6 5.5 4.3e-14 52.6 3.8 4.3 1 1 2 4 4 4 1 O-antigen ligase like membrane protein Glyco_transf_8 PF01501.15 gi|89256096|ref|YP_513458.1| - 4.2e-42 144.1 7.0 5.8e-42 143.7 4.8 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 8 Glycos_transf_1 PF00534.15 gi|89256097|ref|YP_513459.1| - 0.0025 17.2 1.0 0.02 14.2 0.2 2.2 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|89256098|ref|YP_513460.1| - 3.4e-41 140.5 0.0 5.2e-41 139.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|89256098|ref|YP_513460.1| - 4.5e-19 68.9 0.0 8.1e-19 68.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|89256098|ref|YP_513460.1| - 3.2e-10 40.1 0.0 6.7e-10 39.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 BH4 PF02180.12 gi|89256098|ref|YP_513460.1| - 0.056 12.9 0.1 0.15 11.5 0.0 1.8 1 0 0 1 1 1 0 Bcl-2 homology region 4 CBAH PF02275.13 gi|89256099|ref|YP_513461.1| - 1.7e-50 172.2 8.3 2.3e-50 171.8 5.7 1.1 1 0 0 1 1 1 1 Linear amide C-N hydrolases, choloylglycine hydrolase family PTR2 PF00854.16 gi|89256100|ref|YP_513462.1| - 8e-26 90.6 16.0 1.1e-25 90.1 11.1 1.4 1 1 0 1 1 1 1 POT family MFS_1 PF07690.11 gi|89256100|ref|YP_513462.1| - 1.4e-06 27.3 23.5 1e-05 24.4 16.3 2.0 1 1 0 1 1 1 1 Major Facilitator Superfamily Per1 PF04080.8 gi|89256100|ref|YP_513462.1| - 0.11 11.9 1.6 0.14 11.5 1.1 1.2 1 0 0 1 1 1 0 Per1-like MFS_1 PF07690.11 gi|89256101|ref|YP_513463.1| - 1.3e-05 24.1 6.0 1.3e-05 24.1 4.2 1.8 2 0 0 2 2 2 1 Major Facilitator Superfamily DUF3099 PF11298.3 gi|89256101|ref|YP_513463.1| - 0.03 14.0 1.4 0.52 10.0 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3099) DUF2700 PF10912.3 gi|89256101|ref|YP_513463.1| - 0.12 12.3 4.2 0.033 14.1 0.7 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF2700) DUF4293 PF14126.1 gi|89256101|ref|YP_513463.1| - 0.28 11.0 6.0 0.18 11.7 0.3 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF4293) 5TM-5TMR_LYT PF07694.7 gi|89256101|ref|YP_513463.1| - 1.6 8.0 11.0 0.071 12.4 0.9 2.3 2 1 0 2 2 2 0 5TMR of 5TMR-LYT DUF4234 PF14018.1 gi|89256101|ref|YP_513463.1| - 2.4 7.9 8.1 34 4.2 5.6 2.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4234) ATP_bind_3 PF01171.15 gi|89256102|ref|YP_513464.1| - 3.5e-49 166.7 0.0 8.8e-49 165.4 0.0 1.7 1 0 0 1 1 1 1 PP-loop family TilS_C PF11734.3 gi|89256102|ref|YP_513464.1| - 1.3e-09 37.1 0.1 3e-09 35.9 0.0 1.6 1 0 0 1 1 1 1 TilS substrate C-terminal domain TilS PF09179.6 gi|89256102|ref|YP_513464.1| - 7.4e-05 22.6 0.1 0.00016 21.6 0.0 1.6 1 0 0 1 1 1 1 TilS substrate binding domain tRNA_Me_trans PF03054.11 gi|89256102|ref|YP_513464.1| - 0.00022 19.9 0.2 0.014 13.9 0.0 2.2 2 0 0 2 2 2 2 tRNA methyl transferase PAPS_reduct PF01507.14 gi|89256102|ref|YP_513464.1| - 0.0065 16.3 0.0 0.034 13.9 0.0 2.2 2 1 0 2 2 2 1 Phosphoadenosine phosphosulfate reductase family NAD_synthase PF02540.12 gi|89256102|ref|YP_513464.1| - 0.013 14.4 0.0 0.029 13.2 0.0 1.6 1 0 0 1 1 1 0 NAD synthase DUF948 PF06103.6 gi|89256102|ref|YP_513464.1| - 0.1 12.4 0.7 0.28 11.0 0.5 1.8 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) 2-Hacid_dh_C PF02826.14 gi|89256103|ref|YP_513465.1| - 1e-47 161.5 0.0 2.1e-47 160.5 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|89256103|ref|YP_513465.1| - 5.3e-31 106.8 0.8 1e-30 105.9 0.1 1.6 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ACT PF01842.20 gi|89256103|ref|YP_513465.1| - 1.6e-05 24.2 0.0 3.9e-05 23.0 0.0 1.7 1 0 0 1 1 1 1 ACT domain NAD_binding_2 PF03446.10 gi|89256103|ref|YP_513465.1| - 2.2e-05 24.3 0.2 0.00016 21.5 0.1 2.3 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase AdoHcyase_NAD PF00670.16 gi|89256103|ref|YP_513465.1| - 0.0081 16.0 0.1 0.018 14.9 0.1 1.5 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|89256103|ref|YP_513465.1| - 0.014 14.8 0.4 0.057 12.8 0.2 2.0 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain IlvN PF07991.7 gi|89256103|ref|YP_513465.1| - 0.035 13.4 0.1 0.067 12.5 0.0 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain XdhC_C PF13478.1 gi|89256103|ref|YP_513465.1| - 0.054 13.7 0.0 0.11 12.8 0.0 1.5 1 0 0 1 1 1 0 XdhC Rossmann domain Thymidylat_synt PF00303.14 gi|89256104|ref|YP_513466.1| - 4.5e-112 373.4 0.0 5.2e-112 373.2 0.0 1.1 1 0 0 1 1 1 1 Thymidylate synthase LGT PF01790.13 gi|89256105|ref|YP_513467.1| - 2.8e-79 265.6 18.2 3.3e-79 265.4 12.6 1.0 1 0 0 1 1 1 1 Prolipoprotein diacylglyceryl transferase VKOR PF07884.9 gi|89256105|ref|YP_513467.1| - 0.0081 16.0 0.2 0.0081 16.0 0.1 3.1 3 1 1 4 4 4 1 Vitamin K epoxide reductase family SUR7 PF06687.7 gi|89256105|ref|YP_513467.1| - 0.087 12.3 0.7 0.16 11.4 0.5 1.4 1 0 0 1 1 1 0 SUR7/PalI family DUF1453 PF07301.6 gi|89256105|ref|YP_513467.1| - 0.11 12.4 4.3 4.9 7.0 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1453) RNase_E_G PF10150.4 gi|89256106|ref|YP_513468.1| - 3.3e-96 321.6 2.2 3.3e-96 321.6 1.5 2.9 2 1 2 4 4 4 1 Ribonuclease E/G family S1 PF00575.18 gi|89256106|ref|YP_513468.1| - 1.3e-11 44.4 0.0 7.2e-11 42.0 0.0 2.5 1 0 0 1 1 1 1 S1 RNA binding domain Flu_C_NS1 PF03506.8 gi|89256106|ref|YP_513468.1| - 0.081 12.6 0.1 0.15 11.7 0.1 1.4 1 0 0 1 1 1 0 Influenza C non-structural protein (NS1) Aminotran_5 PF00266.14 gi|89256107|ref|YP_513469.1| - 3.6e-70 236.5 1.5 5.3e-70 236.0 1.1 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|89256107|ref|YP_513469.1| - 3.6e-09 36.1 0.6 1.4e-08 34.2 0.1 1.9 2 0 0 2 2 2 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|89256107|ref|YP_513469.1| - 5.3e-07 29.0 0.1 7.9e-07 28.4 0.1 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Pyridoxal_deC PF00282.14 gi|89256107|ref|YP_513469.1| - 0.00063 18.2 0.0 0.0011 17.5 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain B12-binding PF02310.14 gi|89256107|ref|YP_513469.1| - 0.0057 16.5 0.0 0.057 13.2 0.0 2.2 1 1 0 2 2 2 1 B12 binding domain RecO_N PF11967.3 gi|89256109|ref|YP_513471.1| - 1.9e-16 59.7 0.1 4.1e-16 58.5 0.0 1.6 1 0 0 1 1 1 1 Recombination protein O N terminal RecO_C PF02565.10 gi|89256109|ref|YP_513471.1| - 6.4e-15 55.0 0.0 1e-14 54.3 0.0 1.3 1 0 0 1 1 1 1 Recombination protein O C terminal SNARE_assoc PF09335.6 gi|89256110|ref|YP_513472.1| - 4e-20 72.2 7.6 4e-20 72.2 5.3 1.8 2 0 0 2 2 2 1 SNARE associated Golgi protein SNARE_assoc PF09335.6 gi|89256111|ref|YP_513473.1| - 3.2e-19 69.3 7.1 3.2e-19 69.3 4.9 1.7 2 0 0 2 2 2 1 SNARE associated Golgi protein Pam17 PF08566.5 gi|89256111|ref|YP_513473.1| - 0.0026 17.4 0.1 0.0053 16.4 0.0 1.5 1 0 0 1 1 1 1 Mitochondrial import protein Pam17 DUF554 PF04474.7 gi|89256111|ref|YP_513473.1| - 0.0034 16.5 8.5 0.0051 15.9 5.9 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF554) BolA PF01722.13 gi|89256112|ref|YP_513474.1| - 9.4e-13 47.9 0.8 1.1e-12 47.6 0.6 1.1 1 0 0 1 1 1 1 BolA-like protein Pneumo_ncap PF03246.8 gi|89256112|ref|YP_513474.1| - 0.11 11.0 0.0 0.13 10.7 0.0 1.1 1 0 0 1 1 1 0 Pneumovirus nucleocapsid protein 5-FTHF_cyc-lig PF01812.15 gi|89256113|ref|YP_513475.1| - 1.8e-27 96.3 0.0 2.1e-27 96.1 0.0 1.0 1 0 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family UPF0149 PF03695.8 gi|89256114|ref|YP_513476.1| - 4e-26 91.9 0.4 5e-26 91.6 0.3 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0149) FAD_binding_3 PF01494.14 gi|89256115|ref|YP_513477.1| - 1.9e-31 109.4 0.0 2.8e-31 108.8 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.19 gi|89256115|ref|YP_513477.1| - 2e-11 43.4 0.1 1.5e-06 27.3 0.1 2.1 2 0 0 2 2 2 2 FAD dependent oxidoreductase SE PF08491.5 gi|89256115|ref|YP_513477.1| - 6.3e-11 41.6 0.4 6.4e-08 31.7 0.1 2.5 3 0 0 3 3 3 2 Squalene epoxidase Trp_halogenase PF04820.9 gi|89256115|ref|YP_513477.1| - 5.6e-07 28.5 0.2 0.024 13.2 0.0 2.7 2 1 0 2 2 2 2 Tryptophan halogenase FAD_binding_2 PF00890.19 gi|89256115|ref|YP_513477.1| - 3.5e-05 22.8 0.6 0.016 14.1 0.3 2.2 1 1 0 2 2 2 2 FAD binding domain Pyr_redox_2 PF07992.9 gi|89256115|ref|YP_513477.1| - 0.00026 20.9 0.8 0.0023 17.8 0.8 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|89256115|ref|YP_513477.1| - 0.00032 19.7 0.0 0.29 10.0 0.0 3.1 3 0 0 3 3 3 1 Lycopene cyclase protein Pyr_redox_3 PF13738.1 gi|89256115|ref|YP_513477.1| - 0.00035 20.6 0.2 0.0011 19.1 0.2 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.9 gi|89256115|ref|YP_513477.1| - 0.0004 19.8 1.5 0.0013 18.1 0.1 2.1 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ThiF PF00899.16 gi|89256115|ref|YP_513477.1| - 0.00056 19.7 0.1 0.0012 18.6 0.0 1.5 1 0 0 1 1 1 1 ThiF family Thi4 PF01946.12 gi|89256115|ref|YP_513477.1| - 0.0011 18.1 0.5 0.0068 15.5 0.1 2.1 2 0 0 2 2 2 1 Thi4 family FAD_oxidored PF12831.2 gi|89256115|ref|YP_513477.1| - 0.002 17.2 0.7 0.0062 15.6 0.5 1.7 1 1 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|89256115|ref|YP_513477.1| - 0.0072 14.8 0.7 0.046 12.1 0.1 2.1 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox PF00070.22 gi|89256115|ref|YP_513477.1| - 0.011 16.0 0.1 0.03 14.7 0.1 1.8 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.11 gi|89256115|ref|YP_513477.1| - 0.022 14.1 0.5 0.047 13.1 0.0 1.7 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.13 gi|89256115|ref|YP_513477.1| - 0.034 13.8 0.1 0.078 12.6 0.0 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_8 PF13450.1 gi|89256115|ref|YP_513477.1| - 0.035 14.1 0.2 0.095 12.7 0.2 1.7 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain NAD_binding_7 PF13241.1 gi|89256115|ref|YP_513477.1| - 0.063 13.5 0.4 0.24 11.6 0.3 2.1 1 1 0 1 1 1 0 Putative NAD(P)-binding FTCD PF02971.9 gi|89256115|ref|YP_513477.1| - 0.064 12.8 0.0 0.2 11.2 0.0 1.9 2 0 0 2 2 2 0 Formiminotransferase domain NAD_binding_9 PF13454.1 gi|89256115|ref|YP_513477.1| - 0.1 12.3 0.9 14 5.4 0.0 2.9 3 0 0 3 3 3 0 FAD-NAD(P)-binding GIDA PF01134.17 gi|89256115|ref|YP_513477.1| - 0.38 9.5 4.0 1.1 8.0 2.7 1.7 1 1 0 1 1 1 0 Glucose inhibited division protein A FAD_binding_3 PF01494.14 gi|89256116|ref|YP_513478.1| - 4.4e-34 118.0 0.0 5.5e-34 117.7 0.0 1.1 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.19 gi|89256116|ref|YP_513478.1| - 1.7e-11 43.6 0.0 1.1e-07 31.0 0.1 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase SE PF08491.5 gi|89256116|ref|YP_513478.1| - 1.8e-11 43.3 0.1 3.9e-11 42.3 0.0 1.5 1 0 0 1 1 1 1 Squalene epoxidase Pyr_redox PF00070.22 gi|89256116|ref|YP_513478.1| - 1.3e-07 31.8 1.3 0.00012 22.4 0.1 2.6 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|89256116|ref|YP_513478.1| - 6.2e-07 28.2 0.1 1e-06 27.4 0.1 1.3 1 0 0 1 1 1 1 HI0933-like protein FAD_binding_2 PF00890.19 gi|89256116|ref|YP_513478.1| - 1.8e-06 27.0 2.4 9.7e-05 21.3 1.7 2.8 2 1 1 3 3 3 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|89256116|ref|YP_513478.1| - 2.4e-06 27.5 0.0 1.2e-05 25.3 0.0 2.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.9 gi|89256116|ref|YP_513478.1| - 4.3e-06 25.6 0.1 0.045 12.3 0.0 2.1 2 0 0 2 2 2 2 Tryptophan halogenase Lycopene_cycl PF05834.7 gi|89256116|ref|YP_513478.1| - 2.2e-05 23.5 2.1 0.0017 17.3 0.6 2.5 2 1 1 3 3 3 1 Lycopene cyclase protein NAD_binding_8 PF13450.1 gi|89256116|ref|YP_513478.1| - 8.8e-05 22.4 0.3 0.00028 20.8 0.2 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain TrkA_N PF02254.13 gi|89256116|ref|YP_513478.1| - 9.3e-05 22.4 0.1 0.00042 20.3 0.0 2.2 2 0 0 2 2 2 1 TrkA-N domain Thi4 PF01946.12 gi|89256116|ref|YP_513478.1| - 0.00046 19.3 0.1 0.0009 18.3 0.0 1.5 1 0 0 1 1 1 1 Thi4 family FAD_oxidored PF12831.2 gi|89256116|ref|YP_513478.1| - 0.0044 16.1 0.2 0.0085 15.2 0.1 1.5 1 1 0 1 1 1 1 FAD dependent oxidoreductase 3HCDH_N PF02737.13 gi|89256116|ref|YP_513478.1| - 0.0047 16.5 1.4 0.025 14.2 1.0 2.1 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox_3 PF13738.1 gi|89256116|ref|YP_513478.1| - 0.0063 16.5 0.1 0.018 15.1 0.1 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.11 gi|89256116|ref|YP_513478.1| - 0.017 14.5 0.3 0.075 12.4 0.1 2.2 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA NAD_binding_7 PF13241.1 gi|89256116|ref|YP_513478.1| - 0.02 15.1 0.0 0.05 13.8 0.0 1.7 1 0 0 1 1 1 0 Putative NAD(P)-binding GIDA PF01134.17 gi|89256116|ref|YP_513478.1| - 0.032 13.1 0.2 0.055 12.3 0.1 1.4 1 0 0 1 1 1 0 Glucose inhibited division protein A NAD_Gly3P_dh_N PF01210.18 gi|89256116|ref|YP_513478.1| - 0.032 13.9 0.0 0.082 12.6 0.0 1.7 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus UDPG_MGDP_dh_N PF03721.9 gi|89256116|ref|YP_513478.1| - 0.044 13.1 0.0 0.095 12.0 0.0 1.6 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Queuosine_synth PF02547.10 gi|89256118|ref|YP_513480.1| - 2.5e-142 473.6 0.0 2.8e-142 473.4 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein Hydrolase_3 PF08282.7 gi|89256119|ref|YP_513481.1| - 1e-50 172.6 1.3 1.2e-50 172.5 0.9 1.0 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|89256119|ref|YP_513481.1| - 8.8e-07 29.5 0.3 0.00027 21.4 0.2 3.2 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|89256119|ref|YP_513481.1| - 5.3e-06 26.7 1.3 0.0019 18.3 0.0 2.9 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|89256119|ref|YP_513481.1| - 0.0001 21.6 0.0 0.036 13.3 0.0 2.4 1 1 0 1 1 1 1 Sucrose-6F-phosphate phosphohydrolase Trehalose_PPase PF02358.11 gi|89256119|ref|YP_513481.1| - 0.01 14.7 0.0 0.015 14.1 0.0 1.3 1 0 0 1 1 1 1 Trehalose-phosphatase Acid_phosphat_B PF03767.9 gi|89256119|ref|YP_513481.1| - 0.08 12.3 0.2 2.7 7.3 0.0 2.3 1 1 1 2 2 2 0 HAD superfamily, subfamily IIIB (Acid phosphatase) DUF165 PF02592.10 gi|89256120|ref|YP_513482.1| - 2.6e-31 108.7 6.0 2.6e-31 108.7 4.2 1.7 2 0 0 2 2 2 1 Uncharacterized ACR, YhhQ family COG1738 Glyoxalase PF00903.20 gi|89256121|ref|YP_513483.1| - 8.8e-25 87.1 0.2 1e-24 86.9 0.1 1.0 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.2 gi|89256121|ref|YP_513483.1| - 1.3e-17 64.3 0.0 1.5e-17 64.1 0.0 1.0 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_4 PF13669.1 gi|89256121|ref|YP_513483.1| - 1.1e-13 51.1 0.1 5.7e-13 48.8 0.0 1.8 1 1 1 2 2 2 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|89256121|ref|YP_513483.1| - 0.0076 16.1 0.0 0.82 9.5 0.0 2.1 1 1 0 2 2 2 1 Glyoxalase-like domain DDE_3 PF13358.1 gi|89256122|ref|YP_513484.1| - 5.3e-31 107.3 0.0 9e-31 106.5 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.11 gi|89256122|ref|YP_513484.1| - 1.6e-07 31.0 0.2 1.1e-06 28.3 0.1 2.1 2 0 0 2 2 2 1 Transposase DDE_1 PF03184.14 gi|89256122|ref|YP_513484.1| - 6e-07 28.8 0.1 9.5e-07 28.1 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_28 PF13518.1 gi|89256122|ref|YP_513484.1| - 0.00058 19.8 0.0 0.0018 18.2 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain rve PF00665.21 gi|89256122|ref|YP_513484.1| - 0.00072 19.6 0.0 0.0013 18.7 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.1 gi|89256122|ref|YP_513484.1| - 0.0087 15.6 0.0 0.029 14.0 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.1 gi|89256122|ref|YP_513484.1| - 0.02 15.0 0.0 0.032 14.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix DDE_Tnp_ISAZ013 PF07592.6 gi|89256122|ref|YP_513484.1| - 0.041 12.6 0.7 0.32 9.7 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain CENP-B_N PF04218.8 gi|89256122|ref|YP_513484.1| - 0.069 12.5 0.0 0.7 9.3 0.0 2.5 3 0 0 3 3 3 0 CENP-B N-terminal DNA-binding domain Rib_5-P_isom_A PF06026.9 gi|89256123|ref|YP_513485.1| - 9.1e-61 204.1 0.5 1.1e-60 203.8 0.4 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.17 gi|89256123|ref|YP_513485.1| - 0.012 15.2 1.1 0.048 13.3 0.2 2.1 1 1 0 2 2 2 0 DeoR C terminal sensor domain GIDA PF01134.17 gi|89256126|ref|YP_513488.1| - 1.3e-166 554.2 0.5 3.2e-166 553.0 0.0 1.7 2 0 0 2 2 2 1 Glucose inhibited division protein A GIDA_assoc_3 PF13932.1 gi|89256126|ref|YP_513488.1| - 5.4e-29 100.0 1.1 2.4e-28 97.9 0.1 2.6 2 1 1 3 3 3 1 GidA associated domain 3 FAD_oxidored PF12831.2 gi|89256126|ref|YP_513488.1| - 5.5e-07 29.0 1.5 1e-06 28.1 1.0 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|89256126|ref|YP_513488.1| - 2.7e-05 24.1 1.6 2.7e-05 24.1 1.1 1.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|89256126|ref|YP_513488.1| - 5.3e-05 22.2 6.4 0.0039 16.0 0.7 2.5 3 0 0 3 3 3 2 FAD binding domain DAO PF01266.19 gi|89256126|ref|YP_513488.1| - 0.00037 19.5 2.5 0.055 12.3 0.1 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox PF00070.22 gi|89256126|ref|YP_513488.1| - 0.0026 18.1 0.9 0.0098 16.2 0.6 2.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HRDC PF00570.18 gi|89256126|ref|YP_513488.1| - 0.0045 16.6 0.0 0.015 15.0 0.0 1.8 2 0 0 2 2 2 1 HRDC domain HI0933_like PF03486.9 gi|89256126|ref|YP_513488.1| - 0.011 14.1 5.2 0.03 12.8 0.7 2.9 3 1 1 4 4 4 0 HI0933-like protein Thi4 PF01946.12 gi|89256126|ref|YP_513488.1| - 0.09 11.8 4.0 0.43 9.6 2.7 2.0 1 1 0 1 1 1 0 Thi4 family Reticulon PF02453.12 gi|89256127|ref|YP_513489.1| - 0.037 13.6 0.6 0.037 13.6 0.4 3.1 2 1 0 2 2 2 0 Reticulon FUSC_2 PF13515.1 gi|89256128|ref|YP_513490.1| - 1.9e-12 47.2 19.7 1.9e-12 47.2 13.6 1.8 1 1 1 2 2 2 1 Fusaric acid resistance protein-like FUSC PF04632.7 gi|89256128|ref|YP_513490.1| - 0.0074 14.7 7.9 0.03 12.7 3.4 2.0 1 1 1 2 2 2 1 Fusaric acid resistance protein family DUF668 PF05003.7 gi|89256128|ref|YP_513490.1| - 0.023 14.8 2.0 0.082 13.1 1.4 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF668) DUF1422 PF07226.6 gi|89256128|ref|YP_513490.1| - 0.05 13.3 6.6 0.095 12.4 4.5 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1422) EamA PF00892.15 gi|89256128|ref|YP_513490.1| - 2.3 8.2 21.2 3.1 7.8 11.5 2.4 1 1 2 3 3 3 0 EamA-like transporter family DUF754 PF05449.6 gi|89256128|ref|YP_513490.1| - 8.2 6.5 14.6 4.5 7.3 0.1 3.1 2 1 0 3 3 3 0 Protein of unknown function (DUF754) LysR_substrate PF03466.15 gi|89256129|ref|YP_513491.1| - 1.3e-14 53.7 0.0 1.5e-14 53.6 0.0 1.0 1 0 0 1 1 1 1 LysR substrate binding domain adh_short PF00106.20 gi|89256130|ref|YP_513492.1| - 1.1e-31 109.9 0.4 1.9e-31 109.2 0.3 1.3 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|89256130|ref|YP_513492.1| - 3.2e-16 59.8 0.9 4.1e-16 59.4 0.6 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|89256130|ref|YP_513492.1| - 1.4e-12 47.6 0.5 5.3e-12 45.7 0.3 1.9 1 1 1 2 2 2 1 KR domain NAD_binding_10 PF13460.1 gi|89256130|ref|YP_513492.1| - 2.4e-09 37.4 0.4 5e-09 36.4 0.3 1.5 1 1 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|89256130|ref|YP_513492.1| - 1e-05 25.1 0.3 1.7e-05 24.3 0.0 1.6 2 1 0 2 2 2 1 NAD dependent epimerase/dehydratase family TrkA_N PF02254.13 gi|89256130|ref|YP_513492.1| - 0.0046 16.9 1.0 0.0079 16.1 0.1 1.8 2 1 0 2 2 2 1 TrkA-N domain RmlD_sub_bind PF04321.12 gi|89256130|ref|YP_513492.1| - 0.011 14.6 0.0 0.017 14.0 0.0 1.4 1 1 0 1 1 1 0 RmlD substrate binding domain NmrA PF05368.8 gi|89256130|ref|YP_513492.1| - 0.012 14.8 0.4 0.029 13.6 0.1 1.7 2 0 0 2 2 2 0 NmrA-like family Eno-Rase_NADH_b PF12242.3 gi|89256130|ref|YP_513492.1| - 0.012 15.3 0.4 0.04 13.7 0.3 1.8 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase 3Beta_HSD PF01073.14 gi|89256130|ref|YP_513492.1| - 0.016 13.9 0.1 0.032 12.9 0.0 1.5 1 1 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family DUF1776 PF08643.5 gi|89256130|ref|YP_513492.1| - 0.023 13.8 0.0 0.03 13.4 0.0 1.1 1 0 0 1 1 1 0 Fungal family of unknown function (DUF1776) ApbA PF02558.11 gi|89256130|ref|YP_513492.1| - 0.025 14.0 0.2 0.08 12.3 0.2 1.9 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA F420_oxidored PF03807.12 gi|89256130|ref|YP_513492.1| - 0.055 13.8 1.0 0.13 12.7 0.1 2.1 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Exonuc_X-T_C PF08411.5 gi|89256131|ref|YP_513493.1| - 4.1e-47 160.4 2.8 1e-46 159.1 2.0 1.6 1 1 0 1 1 1 1 Exonuclease C-terminal RNase_T PF00929.19 gi|89256131|ref|YP_513493.1| - 3.8e-14 53.3 0.2 1.1e-12 48.5 0.0 2.9 2 1 0 2 2 2 1 Exonuclease DUF3579 PF12112.3 gi|89256131|ref|YP_513493.1| - 0.074 12.9 0.2 0.38 10.6 0.0 2.2 3 0 0 3 3 3 0 Protein of unknown function (DUF3579) UvrB PF12344.3 gi|89256132|ref|YP_513494.1| - 1.7e-22 78.6 1.1 1.7e-22 78.6 0.7 2.3 2 0 0 2 2 2 1 Ultra-violet resistance protein B Helicase_C PF00271.26 gi|89256132|ref|YP_513494.1| - 4.7e-15 55.2 0.0 1.4e-14 53.6 0.0 1.9 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|89256132|ref|YP_513494.1| - 3.6e-14 53.0 0.1 6e-12 45.7 0.0 2.7 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|89256132|ref|YP_513494.1| - 8.9e-09 35.0 0.2 5.4e-05 22.7 0.1 3.9 3 2 0 3 3 3 2 DEAD/DEAH box helicase UVR PF02151.14 gi|89256132|ref|YP_513494.1| - 3.9e-08 32.5 3.5 3.9e-08 32.5 2.4 2.5 2 0 0 2 2 2 1 UvrB/uvrC motif AAA_19 PF13245.1 gi|89256132|ref|YP_513494.1| - 5.5e-05 22.8 0.1 0.012 15.3 0.0 3.1 3 0 0 3 3 3 1 Part of AAA domain Kinesin PF00225.18 gi|89256132|ref|YP_513494.1| - 0.00022 20.0 0.1 0.00022 20.0 0.1 1.8 2 0 0 2 2 2 1 Kinesin motor domain AAA_30 PF13604.1 gi|89256132|ref|YP_513494.1| - 0.00082 19.0 0.0 0.075 12.6 0.0 2.9 3 0 0 3 3 3 1 AAA domain eIF3_p135 PF12807.2 gi|89256132|ref|YP_513494.1| - 0.042 13.7 9.6 0.79 9.6 0.1 3.4 3 0 0 3 3 3 0 Translation initiation factor eIF3 subunit 135 DUF87 PF01935.12 gi|89256132|ref|YP_513494.1| - 0.06 13.1 0.0 0.06 13.1 0.0 3.5 4 1 0 4 4 4 0 Domain of unknown function DUF87 AAA_33 PF13671.1 gi|89256132|ref|YP_513494.1| - 0.11 12.4 0.0 0.49 10.2 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|89256132|ref|YP_513494.1| - 0.11 12.6 2.0 0.88 9.7 0.0 3.2 3 1 0 3 3 3 0 AAA domain GerPC PF10737.4 gi|89256132|ref|YP_513494.1| - 3 7.5 14.9 0.085 12.6 0.4 3.4 3 0 0 3 3 3 0 Spore germination protein GerPC NERD PF08378.6 gi|89256133|ref|YP_513495.1| - 5.9e-21 74.8 1.1 9.2e-21 74.2 0.7 1.3 1 0 0 1 1 1 1 Nuclease-related domain DUF4143 PF13635.1 gi|89256133|ref|YP_513495.1| - 0.00068 19.7 0.2 0.0019 18.2 0.1 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4143) Glucos_trans_II PF14264.1 gi|89256133|ref|YP_513495.1| - 0.0072 15.3 1.0 0.0072 15.3 0.7 1.6 2 0 0 2 2 2 1 Glucosyl transferase GtrII PRANC PF09372.5 gi|89256133|ref|YP_513495.1| - 2.9 7.9 8.0 2.8 7.9 2.9 2.4 2 0 0 2 2 2 0 PRANC domain Asp_Glu_race PF01177.17 gi|89256134|ref|YP_513496.1| - 3.6e-33 115.3 1.5 4.2e-33 115.0 1.0 1.1 1 0 0 1 1 1 1 Asp/Glu/Hydantoin racemase Baculo_p74 PF04583.7 gi|89256134|ref|YP_513496.1| - 0.021 14.0 1.0 0.042 13.0 0.7 1.5 1 0 0 1 1 1 0 Baculoviridae p74 conserved region MFS_1 PF07690.11 gi|89256135|ref|YP_513497.1| - 8.5e-26 90.4 85.1 5.3e-22 78.0 35.6 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|89256135|ref|YP_513497.1| - 7.3e-20 70.9 52.3 2.7e-11 42.7 13.9 2.0 1 1 1 2 2 2 2 Sugar (and other) transporter PPPI_inhib PF14895.1 gi|89256135|ref|YP_513497.1| - 0.19 10.4 0.1 0.28 9.8 0.1 1.1 1 0 0 1 1 1 0 Protein phosphatase 1 inhibitor DDE_Tnp_1_2 PF13586.1 gi|89256136|ref|YP_513498.1| - 4.4e-16 58.8 0.1 1.3e-15 57.3 0.1 1.8 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|89256136|ref|YP_513498.1| - 2.5e-13 50.0 1.1 8.7e-13 48.2 0.8 1.7 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|89256136|ref|YP_513498.1| - 2.1e-09 37.3 0.1 2.9e-09 36.8 0.1 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF4096 PF13340.1 gi|89256136|ref|YP_513498.1| - 0.00058 19.6 0.0 0.0012 18.7 0.0 1.5 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) Alpha-E PF04168.7 gi|89256137|ref|YP_513499.1| - 5.6e-58 196.7 0.4 6.8e-58 196.4 0.3 1.0 1 0 0 1 1 1 1 A predicted alpha-helical domain with a conserved ER motif. GATase_4 PF13230.1 gi|89256138|ref|YP_513500.1| - 4.6e-83 278.0 0.0 6.4e-83 277.5 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Transglut_core PF01841.14 gi|89256138|ref|YP_513500.1| - 5.3e-22 78.1 0.1 9.4e-22 77.3 0.0 1.4 1 0 0 1 1 1 1 Transglutaminase-like superfamily Bact_transglu_N PF08379.5 gi|89256138|ref|YP_513500.1| - 6.6e-18 64.8 0.1 1.2e-17 63.9 0.1 1.5 1 0 0 1 1 1 1 Bacterial transglutaminase-like N-terminal region GATase_6 PF13522.1 gi|89256138|ref|YP_513500.1| - 8.4e-06 25.7 0.0 9.6e-05 22.3 0.0 2.2 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_7 PF13537.1 gi|89256138|ref|YP_513500.1| - 0.042 13.5 0.0 0.13 11.9 0.0 1.9 2 0 0 2 2 2 0 Glutamine amidotransferase domain Peptidase_M20 PF01546.23 gi|89256139|ref|YP_513501.1| - 1.7e-26 92.9 0.0 2.2e-26 92.5 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|89256139|ref|YP_513501.1| - 1.3e-14 53.9 0.0 2.4e-14 53.0 0.0 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.12 gi|89256139|ref|YP_513501.1| - 0.047 13.4 0.0 0.68 9.6 0.0 2.1 2 0 0 2 2 2 0 Peptidase family M28 Exonuc_VII_L PF02601.10 gi|89256140|ref|YP_513502.1| - 1.3e-75 254.5 3.2 1.6e-75 254.2 2.3 1.1 1 0 0 1 1 1 1 Exonuclease VII, large subunit tRNA_anti_2 PF13742.1 gi|89256140|ref|YP_513502.1| - 2.6e-20 72.1 0.7 7.4e-20 70.6 0.0 2.1 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain DUF3864 PF12980.2 gi|89256141|ref|YP_513503.1| - 0.00081 19.5 0.2 0.001 19.1 0.1 1.2 1 0 0 1 1 1 1 Domain of Unknown Function with PDB structure (DUF3864) P53_tetramer PF07710.6 gi|89256141|ref|YP_513503.1| - 0.019 14.0 0.1 0.04 13.0 0.1 1.5 1 0 0 1 1 1 0 P53 tetramerisation motif Exonuc_VII_S PF02609.11 gi|89256141|ref|YP_513503.1| - 0.026 14.3 4.2 0.046 13.4 2.3 1.8 1 1 0 1 1 1 0 Exonuclease VII small subunit Sigma70_r1_1 PF03979.9 gi|89256141|ref|YP_513503.1| - 0.059 13.3 0.2 0.086 12.7 0.1 1.2 1 0 0 1 1 1 0 Sigma-70 factor, region 1.1 DUF4004 PF13171.1 gi|89256141|ref|YP_513503.1| - 0.063 13.4 0.3 0.063 13.4 0.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF4004) NEL PF14496.1 gi|89256141|ref|YP_513503.1| - 0.083 12.1 0.3 0.092 12.0 0.2 1.0 1 0 0 1 1 1 0 C-terminal novel E3 ligase, LRR-interacting Syntaxin-6_N PF09177.6 gi|89256141|ref|YP_513503.1| - 0.13 12.6 0.6 0.17 12.3 0.4 1.2 1 0 0 1 1 1 0 Syntaxin 6, N-terminal ABC_tran_2 PF12848.2 gi|89256141|ref|YP_513503.1| - 0.33 10.8 3.3 0.51 10.2 0.2 2.0 2 0 0 2 2 2 0 ABC transporter ATP_bind_3 PF01171.15 gi|89256143|ref|YP_513505.1| - 3.1e-13 49.6 0.0 3.9e-13 49.3 0.0 1.2 1 0 0 1 1 1 1 PP-loop family Ish1 PF10281.4 gi|89256143|ref|YP_513505.1| - 0.0044 17.0 0.1 0.023 14.7 0.0 2.3 2 0 0 2 2 2 1 Putative stress-responsive nuclear envelope protein Glyco_hydro_101 PF12905.2 gi|89256143|ref|YP_513505.1| - 0.042 12.4 0.0 0.055 12.0 0.0 1.1 1 0 0 1 1 1 0 Endo-alpha-N-acetylgalactosaminidase SmpB PF01668.13 gi|89256144|ref|YP_513506.1| - 7.9e-30 102.4 0.0 1.1e-29 101.9 0.0 1.2 1 0 0 1 1 1 1 SmpB protein Polyketide_cyc PF03364.15 gi|89256145|ref|YP_513507.1| - 6.9e-27 94.0 0.0 7.9e-27 93.8 0.0 1.0 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc2 PF10604.4 gi|89256145|ref|YP_513507.1| - 1.8e-09 37.8 0.0 2.2e-09 37.5 0.0 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport COXG PF06240.8 gi|89256145|ref|YP_513507.1| - 0.017 14.8 0.0 0.053 13.1 0.0 1.9 1 1 0 1 1 1 0 Carbon monoxide dehydrogenase subunit G (CoxG) Ub-RnfH PF03658.9 gi|89256146|ref|YP_513508.1| - 1.3e-22 79.4 0.5 1.6e-22 79.1 0.3 1.1 1 0 0 1 1 1 1 RnfH family Ubiquitin TGS PF02824.16 gi|89256146|ref|YP_513508.1| - 0.0099 15.6 0.0 0.022 14.5 0.0 1.8 1 1 0 1 1 1 1 TGS domain ThiS PF02597.15 gi|89256146|ref|YP_513508.1| - 0.072 13.5 0.1 0.11 12.9 0.0 1.3 1 0 0 1 1 1 0 ThiS family DAO PF01266.19 gi|89256147|ref|YP_513509.1| - 2.7e-32 112.0 0.0 3.9e-32 111.5 0.0 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|89256147|ref|YP_513509.1| - 8.7e-09 35.2 0.0 1.9e-08 34.2 0.0 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.9 gi|89256147|ref|YP_513509.1| - 1.4e-06 28.3 0.0 2.7e-06 27.4 0.0 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|89256147|ref|YP_513509.1| - 0.00016 21.4 0.0 0.00057 19.6 0.0 1.9 2 0 0 2 2 2 1 FAD-NAD(P)-binding FAD_binding_2 PF00890.19 gi|89256147|ref|YP_513509.1| - 0.00076 18.4 0.0 0.001 17.9 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.22 gi|89256147|ref|YP_513509.1| - 0.0022 18.3 0.2 0.012 16.0 0.0 2.3 3 0 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.1 gi|89256147|ref|YP_513509.1| - 0.0024 16.8 0.0 0.58 9.0 0.0 2.3 1 1 0 2 2 2 2 L-lysine 6-monooxygenase (NADPH-requiring) Lycopene_cycl PF05834.7 gi|89256147|ref|YP_513509.1| - 0.0041 16.0 0.3 0.0076 15.2 0.0 1.5 2 0 0 2 2 2 1 Lycopene cyclase protein Pyr_redox_3 PF13738.1 gi|89256147|ref|YP_513509.1| - 0.0052 16.8 0.0 0.01 15.9 0.0 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.13 gi|89256147|ref|YP_513509.1| - 0.0054 16.7 0.0 0.018 15.0 0.0 2.0 2 1 0 2 2 2 1 TrkA-N domain Shikimate_DH PF01488.15 gi|89256147|ref|YP_513509.1| - 0.013 15.6 0.0 0.16 12.0 0.0 2.5 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase UDPG_MGDP_dh_N PF03721.9 gi|89256147|ref|YP_513509.1| - 0.032 13.6 0.0 0.065 12.6 0.0 1.5 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Thi4 PF01946.12 gi|89256147|ref|YP_513509.1| - 0.041 12.9 0.0 0.11 11.5 0.0 1.8 1 0 0 1 1 1 0 Thi4 family ApbA PF02558.11 gi|89256147|ref|YP_513509.1| - 0.051 13.0 0.0 0.12 11.7 0.0 1.6 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA GIDA PF01134.17 gi|89256147|ref|YP_513509.1| - 0.058 12.2 0.1 0.1 11.4 0.1 1.4 1 0 0 1 1 1 0 Glucose inhibited division protein A 3HCDH_N PF02737.13 gi|89256147|ref|YP_513509.1| - 0.063 12.9 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Mqo PF06039.10 gi|89256147|ref|YP_513509.1| - 0.067 11.3 0.1 2.5 6.1 0.0 2.4 2 1 1 3 3 3 0 Malate:quinone oxidoreductase (Mqo) ThiF PF00899.16 gi|89256147|ref|YP_513509.1| - 0.097 12.4 0.0 0.28 10.9 0.0 1.7 1 0 0 1 1 1 0 ThiF family VacJ PF04333.8 gi|89256148|ref|YP_513510.1| - 9.5e-42 142.7 3.1 1.4e-41 142.1 1.0 1.8 2 0 0 2 2 2 1 VacJ like lipoprotein G_glu_transpept PF01019.16 gi|89256149|ref|YP_513511.1| - 2.3e-175 583.9 0.1 2.6e-175 583.7 0.0 1.0 1 0 0 1 1 1 1 Gamma-glutamyltranspeptidase Methyltransf_11 PF08241.7 gi|89256150|ref|YP_513512.1| - 1.3e-12 48.0 0.0 2.4e-12 47.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|89256150|ref|YP_513512.1| - 1.6e-07 31.0 0.0 2.2e-07 30.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|89256150|ref|YP_513512.1| - 1.6e-06 28.5 0.0 2.8e-06 27.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|89256150|ref|YP_513512.1| - 2.7e-06 26.6 0.0 3.9e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.1 gi|89256150|ref|YP_513512.1| - 4.6e-05 23.2 0.0 6.4e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain DREV PF05219.7 gi|89256150|ref|YP_513512.1| - 0.00034 19.5 0.0 0.00043 19.2 0.0 1.1 1 0 0 1 1 1 1 DREV methyltransferase Methyltransf_25 PF13649.1 gi|89256150|ref|YP_513512.1| - 0.0014 18.9 0.0 0.0022 18.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.10 gi|89256150|ref|YP_513512.1| - 0.0015 18.2 0.0 0.0024 17.5 0.0 1.3 1 0 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_18 PF12847.2 gi|89256150|ref|YP_513512.1| - 0.002 18.7 0.0 0.0045 17.5 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|89256150|ref|YP_513512.1| - 0.034 13.5 0.0 0.061 12.6 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase small domain GTP_EFTU PF00009.22 gi|89256151|ref|YP_513513.1| - 3.6e-54 183.0 0.1 5.5e-54 182.4 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_C PF00679.19 gi|89256151|ref|YP_513513.1| - 9.2e-22 76.7 0.0 2e-21 75.6 0.0 1.6 1 0 0 1 1 1 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.20 gi|89256151|ref|YP_513513.1| - 1e-09 38.3 2.0 3e-09 36.8 1.4 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|89256151|ref|YP_513513.1| - 1.6e-05 24.8 0.1 3.3e-05 23.8 0.1 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase EFG_II PF14492.1 gi|89256151|ref|YP_513513.1| - 0.00018 21.2 0.0 0.00043 20.0 0.0 1.7 1 0 0 1 1 1 1 Elongation Factor G, domain II Miro PF08477.8 gi|89256151|ref|YP_513513.1| - 0.0004 20.8 0.0 0.001 19.5 0.0 1.8 1 0 0 1 1 1 1 Miro-like protein Septin PF00735.13 gi|89256151|ref|YP_513513.1| - 0.0041 16.1 0.0 0.0073 15.3 0.0 1.3 1 0 0 1 1 1 1 Septin SRPRB PF09439.5 gi|89256151|ref|YP_513513.1| - 0.0062 15.7 0.4 0.052 12.7 0.1 2.4 2 1 0 2 2 2 1 Signal recognition particle receptor beta subunit FeoB_N PF02421.13 gi|89256151|ref|YP_513513.1| - 0.0069 15.6 0.1 0.71 9.1 0.0 3.7 4 1 0 4 4 4 1 Ferrous iron transport protein B Dynamin_N PF00350.18 gi|89256151|ref|YP_513513.1| - 0.0088 15.8 0.0 0.55 10.0 0.0 2.4 1 1 1 2 2 2 1 Dynamin family Syntaxin_2 PF14523.1 gi|89256152|ref|YP_513514.1| - 0.008 16.1 5.7 0.008 16.1 4.0 3.0 3 0 0 3 3 3 1 Syntaxin-like protein KxDL PF10241.4 gi|89256152|ref|YP_513514.1| - 0.083 12.8 7.8 6.2 6.8 0.5 3.6 3 0 0 3 3 3 0 Uncharacterized conserved protein Phage_Gp14 PF10666.4 gi|89256152|ref|YP_513514.1| - 0.1 12.4 5.6 0.15 11.9 0.2 3.2 2 1 0 2 2 2 0 Phage protein Gp14 Syntaxin PF00804.20 gi|89256152|ref|YP_513514.1| - 0.74 10.0 14.2 0.14 12.2 3.9 3.1 3 0 0 3 3 3 0 Syntaxin HR1 PF02185.11 gi|89256152|ref|YP_513514.1| - 4.7 7.0 10.2 0.68 9.7 2.0 3.1 3 1 0 3 3 3 0 Hr1 repeat Lipoprotein_16 PF03923.8 gi|89256153|ref|YP_513515.1| - 0.0016 17.8 0.6 0.0032 16.8 0.4 1.5 1 0 0 1 1 1 1 Uncharacterized lipoprotein Baculo_PEP_C PF04513.7 gi|89256153|ref|YP_513515.1| - 0.0089 15.8 1.5 0.1 12.4 0.3 2.1 1 1 1 2 2 2 1 Baculovirus polyhedron envelope protein, PEP, C terminus V-SNARE PF05008.10 gi|89256153|ref|YP_513515.1| - 0.012 15.8 9.9 0.19 11.8 0.3 3.1 2 1 1 3 3 3 0 Vesicle transport v-SNARE protein N-terminus Peptidase_U4 PF03419.8 gi|89256153|ref|YP_513515.1| - 0.024 13.7 1.1 0.038 13.0 0.7 1.2 1 0 0 1 1 1 0 Sporulation factor SpoIIGA TBPIP PF07106.8 gi|89256153|ref|YP_513515.1| - 0.081 12.4 9.5 0.87 9.1 0.2 2.7 2 1 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) YgaB PF14182.1 gi|89256153|ref|YP_513515.1| - 0.094 12.9 3.0 0.11 12.7 1.0 1.9 2 0 0 2 2 2 0 YgaB-like protein DUF4446 PF14584.1 gi|89256153|ref|YP_513515.1| - 0.1 12.3 3.2 0.4 10.4 0.2 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF4446) Hemagglutinin PF00509.13 gi|89256153|ref|YP_513515.1| - 0.13 10.3 3.5 0.16 10.0 2.4 1.2 1 0 0 1 1 1 0 Haemagglutinin TroA PF01297.12 gi|89256153|ref|YP_513515.1| - 0.15 11.3 1.6 0.23 10.6 0.1 1.8 2 0 0 2 2 2 0 Periplasmic solute binding protein family DNA_repr_REX1B PF14966.1 gi|89256153|ref|YP_513515.1| - 0.21 12.0 1.4 1.2 9.6 0.1 2.4 2 1 0 2 2 2 0 DNA repair REX1-B SH3BP5 PF05276.9 gi|89256153|ref|YP_513515.1| - 0.21 10.8 5.4 0.2 10.9 0.9 2.2 2 0 0 2 2 2 0 SH3 domain-binding protein 5 (SH3BP5) NPV_P10 PF05531.7 gi|89256153|ref|YP_513515.1| - 0.22 11.7 3.3 0.97 9.7 0.8 2.6 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein Prefoldin_2 PF01920.15 gi|89256153|ref|YP_513515.1| - 0.42 10.3 5.1 6.1 6.6 0.6 2.5 2 1 0 2 2 2 0 Prefoldin subunit Lipoprotein_6 PF01441.14 gi|89256153|ref|YP_513515.1| - 0.48 10.2 3.9 2 8.2 0.4 2.2 1 1 0 2 2 2 0 Lipoprotein Syntaxin PF00804.20 gi|89256153|ref|YP_513515.1| - 0.85 9.8 5.7 0.95 9.6 1.6 2.2 2 0 0 2 2 2 0 Syntaxin IncA PF04156.9 gi|89256153|ref|YP_513515.1| - 0.89 9.1 4.1 3.5 7.1 2.9 1.9 1 1 0 1 1 1 0 IncA protein DUF4337 PF14235.1 gi|89256153|ref|YP_513515.1| - 2 8.2 9.9 13 5.6 0.5 3.1 2 1 1 3 3 3 0 Domain of unknown function (DUF4337) CBFD_NFYB_HMF PF00808.18 gi|89256154|ref|YP_513516.1| - 0.097 12.7 0.3 0.11 12.5 0.2 1.1 1 0 0 1 1 1 0 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Cytomega_gL PF01801.11 gi|89256154|ref|YP_513516.1| - 0.1 12.0 0.0 0.1 12.0 0.0 1.0 1 0 0 1 1 1 0 Cytomegalovirus glycoprotein L PPAK PF02818.10 gi|89256154|ref|YP_513516.1| - 0.12 12.3 1.8 0.22 11.4 1.3 1.5 1 0 0 1 1 1 0 PPAK motif CSD PF00313.17 gi|89256155|ref|YP_513517.1| - 9.7e-13 47.6 0.5 1.7e-12 46.9 0.3 1.4 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain Zn-ribbon_8 PF09723.5 gi|89256155|ref|YP_513517.1| - 0.026 14.4 1.9 0.037 13.9 0.2 2.1 2 0 0 2 2 2 0 Zinc ribbon domain OB_RNB PF08206.6 gi|89256155|ref|YP_513517.1| - 0.028 13.9 0.2 0.044 13.3 0.2 1.4 1 0 0 1 1 1 0 Ribonuclease B OB domain DiS_P_DiS PF06750.8 gi|89256155|ref|YP_513517.1| - 0.051 13.3 2.3 6.6 6.5 1.6 2.2 1 1 0 1 1 1 0 Bacterial Peptidase A24 N-terminal domain DUF2318 PF10080.4 gi|89256155|ref|YP_513517.1| - 0.055 13.2 0.6 0.14 11.9 0.4 1.8 1 1 0 1 1 1 0 Predicted membrane protein (DUF2318) DZR PF12773.2 gi|89256155|ref|YP_513517.1| - 0.11 12.3 1.9 0.3 10.9 1.3 1.7 1 1 0 1 1 1 0 Double zinc ribbon zf-FCS PF06467.9 gi|89256155|ref|YP_513517.1| - 0.13 11.8 1.0 9.7 5.9 0.0 2.5 1 1 1 2 2 2 0 MYM-type Zinc finger with FCS sequence motif Big_3 PF07523.7 gi|89256155|ref|YP_513517.1| - 0.13 12.3 0.0 0.24 11.5 0.0 1.4 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 3) zf-ribbon_3 PF13248.1 gi|89256155|ref|YP_513517.1| - 0.14 11.4 1.7 0.34 10.1 1.2 1.7 1 1 0 1 1 1 0 zinc-ribbon domain zf-RING_3 PF14369.1 gi|89256155|ref|YP_513517.1| - 0.21 11.5 2.2 0.48 10.4 0.1 2.1 1 1 1 2 2 2 0 zinc-finger Vps39_2 PF10367.4 gi|89256155|ref|YP_513517.1| - 0.24 11.5 1.7 0.73 10.0 1.2 1.8 1 1 0 1 1 1 0 Vacuolar sorting protein 39 domain 2 DUF164 PF02591.10 gi|89256155|ref|YP_513517.1| - 0.39 10.5 1.6 0.79 9.6 0.2 2.0 2 0 0 2 2 2 0 Putative zinc ribbon domain DDE_3 PF13358.1 gi|89256156|ref|YP_513518.1| - 5.3e-31 107.3 0.0 9e-31 106.5 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.11 gi|89256156|ref|YP_513518.1| - 1.6e-07 31.0 0.2 1.1e-06 28.3 0.1 2.1 2 0 0 2 2 2 1 Transposase DDE_1 PF03184.14 gi|89256156|ref|YP_513518.1| - 6e-07 28.8 0.1 9.5e-07 28.1 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_28 PF13518.1 gi|89256156|ref|YP_513518.1| - 0.00058 19.8 0.0 0.0018 18.2 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain rve PF00665.21 gi|89256156|ref|YP_513518.1| - 0.00072 19.6 0.0 0.0013 18.7 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.1 gi|89256156|ref|YP_513518.1| - 0.0087 15.6 0.0 0.029 14.0 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.1 gi|89256156|ref|YP_513518.1| - 0.02 15.0 0.0 0.032 14.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix DDE_Tnp_ISAZ013 PF07592.6 gi|89256156|ref|YP_513518.1| - 0.041 12.6 0.7 0.32 9.7 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain CENP-B_N PF04218.8 gi|89256156|ref|YP_513518.1| - 0.069 12.5 0.0 0.7 9.3 0.0 2.5 3 0 0 3 3 3 0 CENP-B N-terminal DNA-binding domain Sel1 PF08238.7 gi|89256157|ref|YP_513519.1| - 4.2e-19 68.5 38.6 2.8e-06 27.7 3.5 5.7 5 0 0 5 5 5 4 Sel1 repeat TPR_11 PF13414.1 gi|89256157|ref|YP_513519.1| - 6e-05 22.6 27.3 0.0033 17.0 8.1 3.1 2 1 0 2 2 2 2 TPR repeat TPR_2 PF07719.12 gi|89256157|ref|YP_513519.1| - 0.0018 18.0 4.5 0.0018 18.0 3.1 7.0 6 1 0 6 6 6 1 Tetratricopeptide repeat TPR_16 PF13432.1 gi|89256157|ref|YP_513519.1| - 0.008 16.8 7.1 0.011 16.4 1.9 3.1 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_12 PF13424.1 gi|89256157|ref|YP_513519.1| - 0.028 14.3 23.3 1.5 8.7 8.2 4.2 2 2 1 3 3 3 0 Tetratricopeptide repeat TPR_14 PF13428.1 gi|89256157|ref|YP_513519.1| - 0.053 14.1 0.9 2.4 9.0 0.0 3.7 3 1 1 4 4 4 0 Tetratricopeptide repeat TPR_6 PF13174.1 gi|89256157|ref|YP_513519.1| - 0.83 10.2 27.3 1.1 9.8 1.7 5.7 5 1 1 6 6 6 0 Tetratricopeptide repeat MMR_HSR1 PF01926.18 gi|89256158|ref|YP_513520.1| - 7.1e-18 64.6 0.0 2e-15 56.7 0.0 2.4 2 0 0 2 2 2 2 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|89256158|ref|YP_513520.1| - 4.8e-08 32.4 0.1 4.1e-07 29.4 0.0 2.2 2 0 0 2 2 2 1 Ferrous iron transport protein B DUF258 PF03193.11 gi|89256158|ref|YP_513520.1| - 0.00033 19.8 0.1 0.00087 18.5 0.0 1.7 1 1 0 1 1 1 1 Protein of unknown function, DUF258 Dynamin_N PF00350.18 gi|89256158|ref|YP_513520.1| - 0.0013 18.5 0.1 0.03 14.1 0.0 2.5 1 1 1 2 2 2 1 Dynamin family Arf PF00025.16 gi|89256158|ref|YP_513520.1| - 0.0046 16.2 0.0 0.011 14.9 0.0 1.7 1 0 0 1 1 1 1 ADP-ribosylation factor family Miro PF08477.8 gi|89256158|ref|YP_513520.1| - 0.0082 16.6 0.0 0.031 14.7 0.0 2.0 1 0 0 1 1 1 1 Miro-like protein AAA_17 PF13207.1 gi|89256158|ref|YP_513520.1| - 0.018 15.8 0.1 0.079 13.7 0.0 2.2 1 1 0 1 1 1 0 AAA domain AIG1 PF04548.11 gi|89256158|ref|YP_513520.1| - 0.021 13.9 0.0 0.04 13.0 0.0 1.5 1 0 0 1 1 1 0 AIG1 family ATP_bind_1 PF03029.12 gi|89256158|ref|YP_513520.1| - 0.14 11.7 0.2 58 3.1 0.0 3.3 2 1 1 3 3 3 0 Conserved hypothetical ATP binding protein AAA_14 PF13173.1 gi|89256158|ref|YP_513520.1| - 0.23 11.3 3.4 1.2 8.9 0.0 3.1 3 1 1 4 4 4 0 AAA domain Amidohydro_1 PF01979.15 gi|89256159|ref|YP_513521.1| - 1e-16 61.5 3.2 1.3e-16 61.1 2.2 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|89256159|ref|YP_513521.1| - 2.4e-10 40.0 2.7 4.2e-10 39.2 0.5 2.4 3 0 0 3 3 3 1 Amidohydrolase Amidohydro_4 PF13147.1 gi|89256159|ref|YP_513521.1| - 4.6e-09 36.7 0.0 0.00025 21.1 0.0 2.4 2 0 0 2 2 2 2 Amidohydrolase Amidohydro_3 PF07969.6 gi|89256159|ref|YP_513521.1| - 1.7e-08 34.1 0.4 0.0037 16.5 0.0 3.1 2 1 1 3 3 3 2 Amidohydrolase family Peptidase_M55 PF04951.8 gi|89256159|ref|YP_513521.1| - 0.012 14.8 0.6 0.89 8.7 0.0 2.6 3 0 0 3 3 3 0 D-aminopeptidase Peptidase_M22 PF00814.20 gi|89256160|ref|YP_513522.1| - 4.2e-24 85.4 0.0 5.2e-24 85.1 0.0 1.1 1 0 0 1 1 1 1 Glycoprotease family GATase_4 PF13230.1 gi|89256161|ref|YP_513523.1| - 1.2e-19 70.0 0.0 1.4e-19 69.8 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferases class-II GATase_6 PF13522.1 gi|89256161|ref|YP_513523.1| - 8.5e-12 45.1 0.0 1.4e-11 44.4 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|89256161|ref|YP_513523.1| - 2.9e-07 29.5 0.0 3.6e-07 29.2 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Vmethyltransf PF01660.12 gi|89256161|ref|YP_513523.1| - 0.066 11.8 0.0 0.11 11.1 0.0 1.3 1 0 0 1 1 1 0 Viral methyltransferase GATase_7 PF13537.1 gi|89256161|ref|YP_513523.1| - 0.13 11.9 0.0 0.22 11.2 0.0 1.4 1 0 0 1 1 1 0 Glutamine amidotransferase domain Aminotran_1_2 PF00155.16 gi|89256162|ref|YP_513524.1| - 2.8e-69 233.8 0.0 3.3e-69 233.5 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|89256162|ref|YP_513524.1| - 7.7e-08 31.7 0.0 1.3e-07 31.0 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|89256162|ref|YP_513524.1| - 1.1e-05 24.3 0.1 3e-05 22.9 0.0 1.8 2 0 0 2 2 2 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|89256162|ref|YP_513524.1| - 4.2e-05 22.0 0.2 0.00013 20.4 0.0 2.0 2 1 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme MMR_HSR1 PF01926.18 gi|89256163|ref|YP_513525.1| - 2e-23 82.5 0.7 4.1e-23 81.5 0.5 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|89256163|ref|YP_513525.1| - 2.9e-14 52.6 0.6 5e-14 51.8 0.4 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B KH_2 PF07650.12 gi|89256163|ref|YP_513525.1| - 5.1e-14 51.5 13.2 6.7e-14 51.2 2.1 3.7 3 1 1 4 4 4 1 KH domain Miro PF08477.8 gi|89256163|ref|YP_513525.1| - 4.2e-11 43.3 0.3 9.1e-11 42.3 0.2 1.6 1 0 0 1 1 1 1 Miro-like protein GTP_EFTU PF00009.22 gi|89256163|ref|YP_513525.1| - 3.3e-10 39.6 0.7 3.5e-08 33.1 0.5 2.4 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain Dynamin_N PF00350.18 gi|89256163|ref|YP_513525.1| - 1.4e-08 34.7 1.0 0.0021 17.9 0.1 2.4 1 1 1 2 2 2 2 Dynamin family AIG1 PF04548.11 gi|89256163|ref|YP_513525.1| - 1.7e-08 33.8 0.2 2.4e-08 33.3 0.2 1.2 1 0 0 1 1 1 1 AIG1 family PduV-EutP PF10662.4 gi|89256163|ref|YP_513525.1| - 3.1e-05 23.5 2.7 0.00014 21.3 1.8 1.9 1 1 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation DUF258 PF03193.11 gi|89256163|ref|YP_513525.1| - 0.00017 20.7 0.2 0.00081 18.6 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function, DUF258 Gtr1_RagA PF04670.7 gi|89256163|ref|YP_513525.1| - 0.00022 20.4 1.3 0.00034 19.8 0.9 1.3 1 0 0 1 1 1 1 Gtr1/RagA G protein conserved region ArgK PF03308.11 gi|89256163|ref|YP_513525.1| - 0.0019 17.0 0.8 0.27 9.9 0.1 2.2 2 0 0 2 2 2 2 ArgK protein KH_1 PF00013.24 gi|89256163|ref|YP_513525.1| - 0.0028 17.2 0.5 0.025 14.2 0.1 2.5 2 0 0 2 2 2 1 KH domain cobW PF02492.14 gi|89256163|ref|YP_513525.1| - 0.016 14.6 1.6 1.4 8.3 0.2 2.2 1 1 1 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_22 PF13401.1 gi|89256163|ref|YP_513525.1| - 0.019 15.0 0.0 0.046 13.8 0.0 1.8 1 1 0 1 1 1 0 AAA domain MobB PF03205.9 gi|89256163|ref|YP_513525.1| - 0.027 14.1 0.9 0.24 11.0 0.1 2.6 1 1 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B NB-ARC PF00931.17 gi|89256163|ref|YP_513525.1| - 0.042 12.6 1.0 0.57 8.9 0.0 2.2 2 0 0 2 2 2 0 NB-ARC domain ATP-synt_ab PF00006.20 gi|89256163|ref|YP_513525.1| - 0.08 12.4 0.0 0.25 10.8 0.0 1.9 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_14 PF13173.1 gi|89256163|ref|YP_513525.1| - 0.096 12.5 3.1 0.1 12.4 0.1 2.4 1 1 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|89256163|ref|YP_513525.1| - 0.1 13.3 0.1 0.29 11.9 0.1 2.0 1 1 0 1 1 1 0 AAA domain ADK PF00406.17 gi|89256165|ref|YP_513527.1| - 4.5e-55 185.6 0.0 7e-55 185.0 0.0 1.3 1 0 0 1 1 1 1 Adenylate kinase ADK_lid PF05191.9 gi|89256165|ref|YP_513527.1| - 4.4e-16 58.2 0.2 9.9e-16 57.1 0.0 1.7 2 0 0 2 2 2 1 Adenylate kinase, active site lid AAA_17 PF13207.1 gi|89256165|ref|YP_513527.1| - 9.3e-09 36.1 0.3 2e-08 35.0 0.2 1.5 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|89256165|ref|YP_513527.1| - 3.3e-05 24.1 0.2 6.1e-05 23.3 0.1 1.5 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|89256165|ref|YP_513527.1| - 0.00058 19.7 0.0 0.0014 18.4 0.0 1.6 2 0 0 2 2 2 1 AAA domain Zeta_toxin PF06414.7 gi|89256165|ref|YP_513527.1| - 0.011 14.8 0.0 0.018 14.1 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_28 PF13521.1 gi|89256165|ref|YP_513527.1| - 0.039 13.9 0.0 0.066 13.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain Thymidylate_kin PF02223.12 gi|89256165|ref|YP_513527.1| - 0.16 11.3 0.6 0.37 10.1 0.0 1.7 2 0 0 2 2 2 0 Thymidylate kinase PilM_2 PF11104.3 gi|89256166|ref|YP_513528.1| - 0.0082 15.0 0.0 0.5 9.1 0.0 2.2 2 0 0 2 2 2 2 Type IV pilus assembly protein PilM; PilN PF05137.8 gi|89256167|ref|YP_513529.1| - 0.00011 21.9 0.1 0.00023 20.9 0.1 1.5 1 0 0 1 1 1 1 Fimbrial assembly protein (PilN) FlxA PF14282.1 gi|89256167|ref|YP_513529.1| - 0.024 14.5 0.1 0.042 13.8 0.1 1.4 1 0 0 1 1 1 0 FlxA-like protein FliD_N PF02465.13 gi|89256167|ref|YP_513529.1| - 0.04 14.2 0.3 0.057 13.7 0.2 1.3 1 0 0 1 1 1 0 Flagellar hook-associated protein 2 N-terminus PilO PF04350.8 gi|89256168|ref|YP_513530.1| - 1.7e-10 40.9 1.6 1.7e-10 40.9 1.1 1.6 2 0 0 2 2 2 1 Pilus assembly protein, PilO T2SM PF04612.7 gi|89256168|ref|YP_513530.1| - 1.2e-05 25.1 0.0 2.1e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 Type II secretion system (T2SS), protein M Phage_GP20 PF06810.6 gi|89256168|ref|YP_513530.1| - 0.0019 17.6 0.8 0.0025 17.2 0.0 1.5 2 0 0 2 2 2 1 Phage minor structural protein GP20 Tmemb_9 PF05434.6 gi|89256168|ref|YP_513530.1| - 0.017 14.8 0.2 0.029 14.1 0.1 1.4 1 0 0 1 1 1 0 TMEM9 HOOK PF05622.7 gi|89256168|ref|YP_513530.1| - 0.025 12.4 1.2 0.036 11.9 0.8 1.1 1 0 0 1 1 1 0 HOOK protein DivIC PF04977.10 gi|89256168|ref|YP_513530.1| - 0.065 12.7 0.2 0.15 11.5 0.1 1.6 1 0 0 1 1 1 0 Septum formation initiator PilP PF04351.8 gi|89256169|ref|YP_513531.1| - 3.7e-11 43.1 1.2 5.2e-11 42.6 0.7 1.4 1 1 0 1 1 1 1 Pilus assembly protein, PilP Secretin PF00263.16 gi|89256170|ref|YP_513532.1| - 6.2e-46 155.7 0.8 1.3e-45 154.7 0.2 1.9 2 0 0 2 2 2 1 Bacterial type II and III secretion system protein Secretin_N PF03958.12 gi|89256170|ref|YP_513532.1| - 3.8e-15 55.8 0.1 1.2e-14 54.2 0.1 1.9 1 0 0 1 1 1 1 Bacterial type II/III secretion system short domain STN PF07660.9 gi|89256170|ref|YP_513532.1| - 1.7e-05 24.2 0.4 0.0006 19.3 0.1 2.9 2 0 0 2 2 2 1 Secretin and TonB N terminus short domain SKI PF01202.17 gi|89256171|ref|YP_513533.1| - 2.6e-53 180.1 0.2 2.9e-53 179.9 0.1 1.0 1 0 0 1 1 1 1 Shikimate kinase AAA_17 PF13207.1 gi|89256171|ref|YP_513533.1| - 7.6e-10 39.6 0.2 1e-09 39.2 0.1 1.3 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|89256171|ref|YP_513533.1| - 5.7e-09 36.3 0.1 6.9e-09 36.0 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|89256171|ref|YP_513533.1| - 1.4e-08 34.7 0.0 3.7e-08 33.3 0.0 1.6 1 1 0 1 1 1 1 AAA domain Cytidylate_kin2 PF13189.1 gi|89256171|ref|YP_513533.1| - 3.5e-07 30.3 0.1 0.00042 20.2 0.0 2.3 1 1 1 2 2 2 2 Cytidylate kinase-like family CoaE PF01121.15 gi|89256171|ref|YP_513533.1| - 0.00032 20.1 0.5 0.018 14.4 0.0 2.2 2 0 0 2 2 2 1 Dephospho-CoA kinase AAA_22 PF13401.1 gi|89256171|ref|YP_513533.1| - 0.0011 19.1 0.1 0.0021 18.1 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|89256171|ref|YP_513533.1| - 0.0011 19.2 0.1 0.0014 18.8 0.1 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.1 gi|89256171|ref|YP_513533.1| - 0.0048 16.7 0.1 0.015 15.1 0.0 1.8 1 1 1 2 2 2 1 AAA domain ABC_tran PF00005.22 gi|89256171|ref|YP_513533.1| - 0.0067 16.7 0.4 0.011 16.0 0.3 1.7 1 1 0 1 1 1 1 ABC transporter AAA_PrkA PF08298.6 gi|89256171|ref|YP_513533.1| - 0.0068 15.1 0.0 0.012 14.3 0.0 1.3 1 0 0 1 1 1 1 PrkA AAA domain AAA_24 PF13479.1 gi|89256171|ref|YP_513533.1| - 0.0086 15.6 0.1 0.046 13.2 0.0 1.9 2 0 0 2 2 2 1 AAA domain APS_kinase PF01583.15 gi|89256171|ref|YP_513533.1| - 0.0099 15.5 0.1 0.042 13.4 0.0 2.0 2 1 0 2 2 2 1 Adenylylsulphate kinase AAA_16 PF13191.1 gi|89256171|ref|YP_513533.1| - 0.012 15.6 0.1 0.019 14.9 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.1 gi|89256171|ref|YP_513533.1| - 0.012 15.1 0.1 0.025 14.1 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Guanylate_kin PF00625.16 gi|89256171|ref|YP_513533.1| - 0.014 14.8 0.2 0.1 12.0 0.0 2.0 2 0 0 2 2 2 0 Guanylate kinase AAA_5 PF07728.9 gi|89256171|ref|YP_513533.1| - 0.019 14.6 0.0 0.05 13.3 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) RNA_helicase PF00910.17 gi|89256171|ref|YP_513533.1| - 0.025 14.7 0.0 0.044 13.9 0.0 1.4 1 0 0 1 1 1 0 RNA helicase AAA_10 PF12846.2 gi|89256171|ref|YP_513533.1| - 0.038 13.4 0.1 0.045 13.1 0.1 1.5 1 1 0 1 1 1 0 AAA-like domain DUF258 PF03193.11 gi|89256171|ref|YP_513533.1| - 0.045 12.9 0.0 0.063 12.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 PduV-EutP PF10662.4 gi|89256171|ref|YP_513533.1| - 0.046 13.2 0.0 0.078 12.4 0.0 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation GTP_EFTU PF00009.22 gi|89256171|ref|YP_513533.1| - 0.076 12.4 0.0 0.15 11.4 0.0 1.6 1 1 0 1 1 1 0 Elongation factor Tu GTP binding domain Zeta_toxin PF06414.7 gi|89256171|ref|YP_513533.1| - 0.085 11.9 0.1 0.35 9.9 0.0 1.9 2 0 0 2 2 2 0 Zeta toxin NTPase_1 PF03266.10 gi|89256171|ref|YP_513533.1| - 0.087 12.5 0.2 0.43 10.2 0.0 2.1 2 1 0 2 2 2 0 NTPase Rad17 PF03215.10 gi|89256171|ref|YP_513533.1| - 0.1 11.2 0.0 0.14 10.8 0.0 1.3 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_25 PF13481.1 gi|89256171|ref|YP_513533.1| - 0.12 11.7 0.0 0.26 10.6 0.0 1.8 1 1 0 1 1 1 0 AAA domain DHQ_synthase PF01761.15 gi|89256172|ref|YP_513534.1| - 4e-97 324.2 0.1 5e-97 323.8 0.1 1.1 1 0 0 1 1 1 1 3-dehydroquinate synthase Fe-ADH_2 PF13685.1 gi|89256172|ref|YP_513534.1| - 3.9e-13 49.2 1.1 3.2e-12 46.2 0.8 2.0 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.14 gi|89256172|ref|YP_513534.1| - 2.9e-11 42.6 0.1 4.6e-11 41.9 0.0 1.3 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase Lipoprotein_7 PF01540.11 gi|89256173|ref|YP_513535.1| - 0.0007 18.7 7.1 0.00083 18.5 4.9 1.0 1 0 0 1 1 1 1 Adhesin lipoprotein SF-assemblin PF06705.6 gi|89256173|ref|YP_513535.1| - 0.0027 16.8 6.0 0.0033 16.6 4.2 1.2 1 0 0 1 1 1 1 SF-assemblin/beta giardin Apolipoprotein PF01442.13 gi|89256173|ref|YP_513535.1| - 0.029 13.8 2.5 0.052 13.0 1.8 1.5 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain MIS13 PF08202.6 gi|89256173|ref|YP_513535.1| - 0.042 12.9 7.4 0.046 12.7 5.1 1.0 1 0 0 1 1 1 0 Mis12-Mtw1 protein family DUF2522 PF10747.4 gi|89256173|ref|YP_513535.1| - 0.05 13.6 0.6 0.068 13.2 0.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2522) DUF4253 PF14062.1 gi|89256173|ref|YP_513535.1| - 0.05 13.2 0.1 0.081 12.5 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4253) IATP PF04568.7 gi|89256173|ref|YP_513535.1| - 0.093 12.7 2.3 0.15 12.1 1.3 1.6 1 1 0 1 1 1 0 Mitochondrial ATPase inhibitor, IATP Fib_alpha PF08702.5 gi|89256173|ref|YP_513535.1| - 0.098 12.7 5.6 0.15 12.1 3.9 1.3 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family DUF740 PF05340.7 gi|89256173|ref|YP_513535.1| - 0.1 10.9 3.3 0.11 10.8 2.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF740) HR1 PF02185.11 gi|89256173|ref|YP_513535.1| - 0.17 11.6 10.4 0.43 10.3 0.7 2.9 1 1 2 3 3 3 0 Hr1 repeat Pox_A_type_inc PF04508.7 gi|89256173|ref|YP_513535.1| - 0.18 11.6 2.7 0.32 10.9 0.2 2.8 3 0 0 3 3 3 0 Viral A-type inclusion protein repeat YueH PF14166.1 gi|89256173|ref|YP_513535.1| - 0.29 10.9 2.5 0.48 10.2 0.1 2.2 2 1 0 2 2 2 0 YueH-like protein DUF883 PF05957.8 gi|89256173|ref|YP_513535.1| - 0.42 11.0 2.8 0.95 9.8 1.2 2.0 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) Baculo_PEP_C PF04513.7 gi|89256173|ref|YP_513535.1| - 0.59 9.9 3.9 0.53 10.1 0.6 1.9 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus Syntaxin-6_N PF09177.6 gi|89256173|ref|YP_513535.1| - 0.87 10.0 4.9 19 5.7 3.4 2.5 1 1 0 1 1 1 0 Syntaxin 6, N-terminal DivIC PF04977.10 gi|89256173|ref|YP_513535.1| - 3 7.3 6.7 12 5.4 1.2 2.5 1 1 1 2 2 2 0 Septum formation initiator Sdh5 PF03937.11 gi|89256174|ref|YP_513536.1| - 2.3e-17 62.4 0.0 3.1e-17 62.0 0.0 1.2 1 0 0 1 1 1 1 Flavinator of succinate dehydrogenase XisI PF08869.6 gi|89256174|ref|YP_513536.1| - 0.05 13.7 0.6 8.6 6.5 0.2 2.2 1 1 1 2 2 2 0 XisI protein Aldedh PF00171.17 gi|89256175|ref|YP_513537.1| - 1.1e-152 508.6 6.9 3.4e-118 394.9 0.7 2.1 2 0 0 2 2 2 2 Aldehyde dehydrogenase family Pro_dh PF01619.13 gi|89256175|ref|YP_513537.1| - 7.2e-100 333.9 2.7 7.2e-100 333.9 1.9 1.8 2 0 0 2 2 2 1 Proline dehydrogenase Pro_dh-DNA_bdg PF14850.1 gi|89256175|ref|YP_513537.1| - 1.7e-45 153.8 0.7 5.5e-45 152.2 0.0 2.3 2 0 0 2 2 2 1 DNA-binding domain of Proline dehydrogenase RecR PF02132.10 gi|89256175|ref|YP_513537.1| - 0.23 10.9 0.0 0.52 9.7 0.0 1.6 1 0 0 1 1 1 0 RecR protein UPF0150 PF03681.10 gi|89256175|ref|YP_513537.1| - 0.42 10.2 2.1 17 5.0 0.0 3.5 4 0 0 4 4 4 0 Uncharacterised protein family (UPF0150) AA_permease_2 PF13520.1 gi|89256176|ref|YP_513538.1| - 5.9e-30 104.1 66.9 2.1e-29 102.3 46.4 1.7 1 1 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|89256176|ref|YP_513538.1| - 7.6e-18 64.0 62.6 2.2e-17 62.5 43.4 1.7 1 1 0 1 1 1 1 Amino acid permease ATP-synt_J PF04911.7 gi|89256176|ref|YP_513538.1| - 0.012 15.0 1.5 3.4 7.1 0.0 3.2 2 0 0 2 2 2 0 ATP synthase j chain MFS_1 PF07690.11 gi|89256177|ref|YP_513539.1| - 4.7e-19 68.3 54.5 2.9e-13 49.2 18.1 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|89256177|ref|YP_513539.1| - 6.4e-12 44.7 17.8 6.4e-12 44.7 12.3 2.6 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_2 PF13347.1 gi|89256177|ref|YP_513539.1| - 4.7 5.5 49.5 0.02 13.2 6.6 3.5 3 1 0 3 3 3 0 MFS/sugar transport protein DFP PF04127.10 gi|89256178|ref|YP_513540.1| - 5.8e-56 189.0 3.9 9e-56 188.4 2.7 1.3 1 0 0 1 1 1 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.14 gi|89256178|ref|YP_513540.1| - 1.6e-36 124.8 4.4 1.7e-36 124.7 0.1 2.3 2 1 0 2 2 2 1 Flavoprotein NAD_binding_10 PF13460.1 gi|89256178|ref|YP_513540.1| - 0.024 14.6 0.1 0.5 10.3 0.0 2.8 4 0 0 4 4 4 0 NADH(P)-binding ChaB PF06150.7 gi|89256179|ref|YP_513541.1| - 3e-23 81.3 3.9 3.6e-23 81.1 2.7 1.1 1 0 0 1 1 1 1 ChaB Tricorn_C1 PF14684.1 gi|89256179|ref|YP_513541.1| - 0.4 10.6 1.9 1.8 8.5 1.3 1.9 1 1 1 2 2 2 0 Tricorn protease C1 domain PRC PF05239.11 gi|89256180|ref|YP_513542.1| - 2.1e-17 62.7 0.1 2.8e-17 62.3 0.1 1.2 1 0 0 1 1 1 1 PRC-barrel domain PRC PF05239.11 gi|89256181|ref|YP_513543.1| - 1.7e-19 69.4 0.3 1.9e-19 69.2 0.2 1.0 1 0 0 1 1 1 1 PRC-barrel domain DUF883 PF05957.8 gi|89256182|ref|YP_513544.1| - 0.00091 19.5 1.9 0.0015 18.8 1.3 1.4 1 1 0 1 1 1 1 Bacterial protein of unknown function (DUF883) ApoLp-III PF07464.6 gi|89256182|ref|YP_513544.1| - 0.092 12.7 1.9 0.09 12.7 1.3 1.1 1 0 0 1 1 1 0 Apolipophorin-III precursor (apoLp-III) DDE_Tnp_1_2 PF13586.1 gi|89256183|ref|YP_513545.1| - 4.4e-16 58.8 0.1 1.3e-15 57.3 0.1 1.8 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|89256183|ref|YP_513545.1| - 2.5e-13 50.0 1.1 8.7e-13 48.2 0.8 1.7 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|89256183|ref|YP_513545.1| - 2.1e-09 37.3 0.1 2.9e-09 36.8 0.1 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF4096 PF13340.1 gi|89256183|ref|YP_513545.1| - 0.00058 19.6 0.0 0.0012 18.7 0.0 1.5 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) Ferrochelatase PF00762.14 gi|89256184|ref|YP_513546.1| - 8.7e-103 343.5 0.0 9.8e-103 343.4 0.0 1.0 1 0 0 1 1 1 1 Ferrochelatase CbiX PF01903.12 gi|89256184|ref|YP_513546.1| - 0.00018 21.5 0.0 0.0026 17.8 0.0 2.5 2 0 0 2 2 2 1 CbiX CbiK PF06180.6 gi|89256184|ref|YP_513546.1| - 0.095 11.7 0.0 4.9 6.1 0.0 2.9 2 1 0 3 3 3 0 Cobalt chelatase (CbiK) DUF4380 PF14315.1 gi|89256185|ref|YP_513547.1| - 0.00059 19.1 0.0 0.00063 18.9 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4380) FSA_C PF10479.4 gi|89256186|ref|YP_513548.1| - 0.026 12.6 2.1 0.03 12.4 1.5 1.0 1 0 0 1 1 1 0 Fragile site-associated protein C-terminus T2SF PF00482.18 gi|89256187|ref|YP_513549.1| - 9.1e-53 177.4 4.3 8e-27 93.6 0.1 2.2 2 0 0 2 2 2 2 Type II secretion system (T2SS), protein F DUF4405 PF14358.1 gi|89256187|ref|YP_513549.1| - 0.029 14.4 0.2 0.076 13.1 0.2 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4405) T2SE PF00437.15 gi|89256188|ref|YP_513550.1| - 2.6e-82 275.7 2.4 2.6e-82 275.7 0.3 1.8 2 0 0 2 2 2 1 Type II/IV secretion system protein T2SE_Nter PF05157.10 gi|89256188|ref|YP_513550.1| - 1.5e-09 37.8 0.1 4.5e-09 36.3 0.1 1.8 1 0 0 1 1 1 1 Type II secretion system (T2SS), protein E, N-terminal domain AAA_19 PF13245.1 gi|89256188|ref|YP_513550.1| - 0.004 16.8 0.1 0.0086 15.8 0.0 1.5 1 0 0 1 1 1 1 Part of AAA domain FtsK_SpoIIIE PF01580.13 gi|89256188|ref|YP_513550.1| - 0.0053 16.2 0.0 0.01 15.3 0.0 1.3 1 0 0 1 1 1 1 FtsK/SpoIIIE family AAA_11 PF13086.1 gi|89256188|ref|YP_513550.1| - 0.0065 16.0 0.2 0.024 14.2 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|89256188|ref|YP_513550.1| - 0.0084 16.2 0.6 0.046 13.8 0.2 2.4 2 1 0 2 2 2 1 AAA domain ResIII PF04851.10 gi|89256188|ref|YP_513550.1| - 0.017 14.9 0.5 0.13 12.0 0.0 2.4 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit PhoH PF02562.11 gi|89256188|ref|YP_513550.1| - 0.023 13.9 0.1 0.061 12.5 0.0 1.7 1 0 0 1 1 1 0 PhoH-like protein AAA_30 PF13604.1 gi|89256188|ref|YP_513550.1| - 0.026 14.1 0.0 0.045 13.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|89256188|ref|YP_513550.1| - 0.027 13.9 0.4 0.071 12.6 0.0 1.8 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|89256188|ref|YP_513550.1| - 0.045 13.7 0.1 0.23 11.4 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain DEAD PF00270.24 gi|89256188|ref|YP_513550.1| - 0.062 12.7 0.0 0.15 11.5 0.0 1.7 1 0 0 1 1 1 0 DEAD/DEAH box helicase AAA_23 PF13476.1 gi|89256188|ref|YP_513550.1| - 0.091 13.0 6.8 0.22 11.8 0.0 2.7 2 1 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|89256188|ref|YP_513550.1| - 8.7 7.1 7.2 5.5 7.8 0.4 2.9 3 0 0 3 3 3 0 AAA domain GDPD PF03009.12 gi|89256189|ref|YP_513551.1| - 4.5e-32 111.5 0.5 5.1e-32 111.3 0.4 1.0 1 0 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family UPF0020 PF01170.13 gi|89256189|ref|YP_513551.1| - 0.052 13.1 0.1 0.086 12.4 0.0 1.4 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 MoCF_biosynth PF00994.19 gi|89256190|ref|YP_513552.1| - 4.6e-26 90.9 0.0 6.6e-26 90.4 0.0 1.2 1 0 0 1 1 1 1 Probable molybdopterin binding domain YrbL-PhoP_reg PF10707.4 gi|89256190|ref|YP_513552.1| - 0.033 13.5 0.0 0.059 12.7 0.0 1.4 1 0 0 1 1 1 0 PhoP regulatory network protein YrbL Ribosomal_L5_C PF00673.16 gi|89256190|ref|YP_513552.1| - 0.11 12.2 0.0 0.22 11.2 0.0 1.5 1 0 0 1 1 1 0 ribosomal L5P family C-terminus Mur_ligase_M PF08245.7 gi|89256191|ref|YP_513553.1| - 7.1e-26 91.4 1.5 7.1e-26 91.4 1.0 2.4 2 0 0 2 2 2 1 Mur ligase middle domain ATP-grasp_4 PF13535.1 gi|89256191|ref|YP_513553.1| - 7.4e-15 55.1 0.0 4.1e-12 46.2 0.0 3.2 2 1 1 3 3 3 1 ATP-grasp domain RimK PF08443.6 gi|89256191|ref|YP_513553.1| - 2e-10 40.4 0.0 8.7e-07 28.6 0.0 2.5 2 0 0 2 2 2 2 RimK-like ATP-grasp domain Mur_ligase_C PF02875.16 gi|89256191|ref|YP_513553.1| - 5.1e-09 36.0 0.0 5.6e-08 32.7 0.0 2.6 2 0 0 2 2 2 1 Mur ligase family, glutamate ligase domain CPSase_L_D2 PF02786.12 gi|89256191|ref|YP_513553.1| - 2.6e-06 26.8 0.0 6.3e-06 25.6 0.0 1.7 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Dala_Dala_lig_C PF07478.8 gi|89256191|ref|YP_513553.1| - 1.6e-05 24.3 1.9 0.00037 19.9 0.0 3.6 4 0 0 4 4 4 1 D-ala D-ala ligase C-terminus ATP-grasp_5 PF13549.1 gi|89256191|ref|YP_513553.1| - 0.0001 21.5 0.0 0.00037 19.7 0.0 1.9 1 0 0 1 1 1 1 ATP-grasp domain GSH-S_ATP PF02955.11 gi|89256191|ref|YP_513553.1| - 0.00011 21.4 0.1 0.00034 19.7 0.0 1.8 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|89256191|ref|YP_513553.1| - 0.00082 18.2 0.0 0.0015 17.3 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp PF02222.17 gi|89256191|ref|YP_513553.1| - 0.0022 17.3 0.0 0.005 16.2 0.0 1.6 1 0 0 1 1 1 1 ATP-grasp domain MoCF_biosynth PF00994.19 gi|89256191|ref|YP_513553.1| - 0.013 14.8 0.5 0.13 11.7 0.1 2.5 2 0 0 2 2 2 0 Probable molybdopterin binding domain Mur_ligase_M PF08245.7 gi|89256192|ref|YP_513554.1| - 2.8e-24 86.2 0.3 4.6e-24 85.5 0.2 1.4 1 0 0 1 1 1 1 Mur ligase middle domain Mur_ligase_C PF02875.16 gi|89256192|ref|YP_513554.1| - 4.5e-07 29.8 0.1 1.7e-06 27.9 0.0 2.0 2 0 0 2 2 2 1 Mur ligase family, glutamate ligase domain YgbB PF02542.11 gi|89256193|ref|YP_513555.1| - 6e-66 221.1 0.9 6.6e-66 220.9 0.6 1.0 1 0 0 1 1 1 1 YgbB family Rhodanese PF00581.15 gi|89256194|ref|YP_513556.1| - 7.9e-34 116.4 0.1 1.4e-15 57.6 0.0 2.2 2 0 0 2 2 2 2 Rhodanese-like domain Trp_Tyr_perm PF03222.8 gi|89256195|ref|YP_513557.1| - 1.9e-29 102.7 22.7 2.3e-29 102.4 15.7 1.1 1 0 0 1 1 1 1 Tryptophan/tyrosine permease family Tmemb_55A PF09788.4 gi|89256195|ref|YP_513557.1| - 0.009 15.1 1.7 0.021 13.9 1.2 1.5 1 0 0 1 1 1 1 Transmembrane protein 55A DctQ PF04290.7 gi|89256195|ref|YP_513557.1| - 0.79 9.4 6.8 0.19 11.4 0.5 2.6 1 1 2 3 3 3 0 Tripartite ATP-independent periplasmic transporters, DctQ component Trp_Tyr_perm PF03222.8 gi|89256196|ref|YP_513558.1| - 2.2e-15 56.4 7.0 2.4e-15 56.2 4.8 1.0 1 0 0 1 1 1 1 Tryptophan/tyrosine permease family Aa_trans PF01490.13 gi|89256196|ref|YP_513558.1| - 0.003 16.1 10.7 0.0035 15.8 7.4 1.0 1 0 0 1 1 1 1 Transmembrane amino acid transporter protein PrgI PF12666.2 gi|89256196|ref|YP_513558.1| - 0.6 10.2 4.5 0.89 9.7 3.2 1.3 1 0 0 1 1 1 0 PrgI family protein DUF1049 PF06305.6 gi|89256196|ref|YP_513558.1| - 2.5 7.6 7.0 0.32 10.5 1.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1049) Lipoprotein_9 PF03180.9 gi|89256197|ref|YP_513559.1| - 2.5e-80 268.7 2.0 3.5e-80 268.3 1.4 1.2 1 0 0 1 1 1 1 NLPA lipoprotein BPD_transp_1 PF00528.17 gi|89256197|ref|YP_513559.1| - 2.7e-19 69.4 15.7 2.7e-19 69.4 10.9 2.3 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|89256198|ref|YP_513560.1| - 1.8e-34 118.9 0.3 5.2e-34 117.4 0.0 1.8 2 0 0 2 2 2 1 ABC transporter NIL PF09383.5 gi|89256198|ref|YP_513560.1| - 1.2e-18 66.4 0.1 2.5e-18 65.4 0.0 1.6 1 0 0 1 1 1 1 NIL domain AAA_21 PF13304.1 gi|89256198|ref|YP_513560.1| - 5.6e-11 42.9 1.9 4.2e-06 26.9 0.3 2.5 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|89256198|ref|YP_513560.1| - 3.3e-09 36.2 0.5 7.1e-09 35.2 0.3 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|89256198|ref|YP_513560.1| - 2.5e-06 27.5 0.3 5.6e-06 26.4 0.2 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|89256198|ref|YP_513560.1| - 1.9e-05 24.7 0.4 0.00053 20.1 0.2 2.3 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|89256198|ref|YP_513560.1| - 0.0012 18.0 0.1 0.0021 17.2 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|89256198|ref|YP_513560.1| - 0.0013 18.2 0.1 0.75 9.1 0.0 2.4 1 1 1 2 2 2 2 AAA-like domain SbcCD_C PF13558.1 gi|89256198|ref|YP_513560.1| - 0.0069 16.2 0.2 0.14 12.0 0.1 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.1 gi|89256198|ref|YP_513560.1| - 0.0095 15.4 0.0 0.019 14.4 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain Arch_ATPase PF01637.13 gi|89256198|ref|YP_513560.1| - 0.011 15.4 0.3 0.027 14.1 0.2 1.6 1 1 0 1 1 1 0 Archaeal ATPase MMR_HSR1 PF01926.18 gi|89256198|ref|YP_513560.1| - 0.022 14.7 0.2 0.057 13.3 0.1 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase ABC_ATPase PF09818.4 gi|89256198|ref|YP_513560.1| - 0.025 13.1 0.2 4.7 5.6 0.0 2.7 2 1 0 2 2 2 0 Predicted ATPase of the ABC class Miro PF08477.8 gi|89256198|ref|YP_513560.1| - 0.026 15.0 0.0 0.074 13.5 0.0 1.8 1 0 0 1 1 1 0 Miro-like protein AAA_23 PF13476.1 gi|89256198|ref|YP_513560.1| - 0.03 14.6 7.1 0.1 12.9 3.8 2.6 2 1 0 2 2 2 0 AAA domain AAA_15 PF13175.1 gi|89256198|ref|YP_513560.1| - 0.11 11.5 8.2 0.24 10.3 4.4 2.0 1 1 0 2 2 2 0 AAA ATPase domain AAA_25 PF13481.1 gi|89256198|ref|YP_513560.1| - 0.13 11.6 0.0 12 5.2 0.0 2.3 2 0 0 2 2 2 0 AAA domain G3P_acyltransf PF02660.10 gi|89256199|ref|YP_513561.1| - 1.8e-55 187.2 19.7 2e-55 187.0 13.6 1.0 1 0 0 1 1 1 1 Glycerol-3-phosphate acyltransferase DUF1418 PF07214.7 gi|89256199|ref|YP_513561.1| - 0.17 11.4 4.0 3.3 7.4 0.4 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF1418) DUF3433 PF11915.3 gi|89256199|ref|YP_513561.1| - 0.97 9.6 8.1 6.4 7.0 0.0 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF3433) DUF3281 PF11685.3 gi|89256200|ref|YP_513562.1| - 8.9e-43 146.3 0.5 9.9e-43 146.2 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3281) DUF3281 PF11685.3 gi|89256201|ref|YP_513563.1| - 1.3e-51 175.3 2.4 1.4e-51 175.2 1.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3281) AsmA_2 PF13502.1 gi|89256201|ref|YP_513563.1| - 0.074 12.3 0.8 0.13 11.6 0.5 1.5 1 1 0 1 1 1 0 AsmA-like C-terminal region TGT PF01702.13 gi|89256203|ref|YP_513565.1| - 2.3e-108 360.9 0.0 2.7e-108 360.7 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase HTH_1 PF00126.22 gi|89256204|ref|YP_513566.1| - 1.6e-13 50.1 0.0 2.3e-13 49.6 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family LysR_substrate PF03466.15 gi|89256204|ref|YP_513566.1| - 0.007 15.4 0.0 0.0087 15.1 0.0 1.1 1 0 0 1 1 1 1 LysR substrate binding domain MarR_2 PF12802.2 gi|89256204|ref|YP_513566.1| - 0.081 12.6 0.1 0.19 11.4 0.0 1.6 2 0 0 2 2 2 0 MarR family EamA PF00892.15 gi|89256205|ref|YP_513567.1| - 1.4e-10 41.2 41.0 1.7e-08 34.5 14.2 2.5 2 1 1 3 3 3 2 EamA-like transporter family Isochorismatase PF00857.15 gi|89256206|ref|YP_513568.1| - 2.2e-38 131.9 1.2 2.5e-38 131.7 0.8 1.0 1 0 0 1 1 1 1 Isochorismatase family FerB PF08150.7 gi|89256206|ref|YP_513568.1| - 0.029 14.4 0.0 0.052 13.6 0.0 1.3 1 0 0 1 1 1 0 FerB (NUC096) domain YajC PF02699.10 gi|89256207|ref|YP_513569.1| - 7.9e-35 118.3 0.3 1.2e-34 117.7 0.2 1.3 1 0 0 1 1 1 1 Preprotein translocase subunit DUF4131 PF13567.1 gi|89256207|ref|YP_513569.1| - 0.0023 17.3 0.0 0.0029 17.0 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4131) T2SM PF04612.7 gi|89256207|ref|YP_513569.1| - 0.0089 15.8 0.0 0.015 15.1 0.0 1.4 1 0 0 1 1 1 1 Type II secretion system (T2SS), protein M FixQ PF05545.6 gi|89256207|ref|YP_513569.1| - 0.0099 15.5 0.3 0.02 14.5 0.0 1.6 2 0 0 2 2 2 1 Cbb3-type cytochrome oxidase component FixQ DUF912 PF06024.7 gi|89256207|ref|YP_513569.1| - 0.012 15.6 0.0 0.024 14.6 0.0 1.5 1 0 0 1 1 1 0 Nucleopolyhedrovirus protein of unknown function (DUF912) DUF2969 PF11184.3 gi|89256207|ref|YP_513569.1| - 0.026 14.6 0.7 0.036 14.1 0.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2969) DUF2208 PF09973.4 gi|89256207|ref|YP_513569.1| - 0.033 13.4 0.4 0.047 12.9 0.3 1.3 1 1 0 1 1 1 0 Predicted membrane protein (DUF2208) MCE PF02470.15 gi|89256207|ref|YP_513569.1| - 0.074 13.0 0.2 0.11 12.4 0.1 1.3 1 0 0 1 1 1 0 mce related protein NfeD PF01957.13 gi|89256207|ref|YP_513569.1| - 0.08 13.0 0.1 0.1 12.7 0.1 1.2 1 0 0 1 1 1 0 NfeD-like C-terminal, partner-binding SecD-TM1 PF13721.1 gi|89256208|ref|YP_513570.1| - 1.1e-30 105.7 0.9 1.1e-30 105.7 0.6 3.3 3 1 0 4 4 4 1 SecD export protein N-terminal TM region SecD_SecF PF02355.11 gi|89256208|ref|YP_513570.1| - 1.1e-24 86.6 15.8 2.6e-24 85.4 10.9 1.6 1 0 0 1 1 1 1 Protein export membrane protein MMPL PF03176.10 gi|89256208|ref|YP_513570.1| - 2.5e-09 36.3 16.9 6.2e-09 35.0 11.7 1.6 1 0 0 1 1 1 1 MMPL family Sec_GG PF07549.9 gi|89256208|ref|YP_513570.1| - 6.1e-08 31.4 0.0 2e-07 29.8 0.0 2.0 1 0 0 1 1 1 1 SecD/SecF GG Motif SecD_SecF PF02355.11 gi|89256209|ref|YP_513571.1| - 1.1e-64 217.1 12.3 1.1e-64 217.1 8.5 1.9 2 0 0 2 2 2 1 Protein export membrane protein Sec_GG PF07549.9 gi|89256209|ref|YP_513571.1| - 7.1e-09 34.3 0.5 2.7e-08 32.5 0.4 2.1 1 0 0 1 1 1 1 SecD/SecF GG Motif Ndc1_Nup PF09531.5 gi|89256209|ref|YP_513571.1| - 0.016 13.6 0.7 0.016 13.6 0.5 2.0 3 1 0 3 3 3 0 Nucleoporin protein Ndc1-Nup DUF494 PF04361.8 gi|89256209|ref|YP_513571.1| - 0.12 12.0 0.1 0.23 11.1 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF494) SH3_3 PF08239.6 gi|89256210|ref|YP_513572.1| - 0.0083 16.2 0.1 0.014 15.5 0.1 1.4 1 0 0 1 1 1 1 Bacterial SH3 domain Med4 PF10018.4 gi|89256210|ref|YP_513572.1| - 0.016 14.6 6.6 0.027 13.8 4.6 1.3 1 0 0 1 1 1 0 Vitamin-D-receptor interacting Mediator subunit 4 SH3_1 PF00018.23 gi|89256210|ref|YP_513572.1| - 0.022 14.1 0.2 0.044 13.1 0.1 1.5 1 0 0 1 1 1 0 SH3 domain Rad4 PF03835.10 gi|89256210|ref|YP_513572.1| - 0.038 13.3 3.0 0.097 12.0 2.1 1.7 1 1 0 1 1 1 0 Rad4 transglutaminase-like domain EMP24_GP25L PF01105.19 gi|89256210|ref|YP_513572.1| - 0.056 13.1 5.5 0.073 12.7 3.8 1.1 1 0 0 1 1 1 0 emp24/gp25L/p24 family/GOLD AAA_23 PF13476.1 gi|89256210|ref|YP_513572.1| - 0.056 13.7 5.9 0.076 13.3 4.1 1.1 1 0 0 1 1 1 0 AAA domain SH3_4 PF06347.8 gi|89256210|ref|YP_513572.1| - 0.056 12.9 0.6 0.12 11.9 0.4 1.5 1 0 0 1 1 1 0 Bacterial SH3 domain DUF2423 PF10338.4 gi|89256210|ref|YP_513572.1| - 0.1 12.5 0.1 0.24 11.3 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2423) SlyX PF04102.7 gi|89256210|ref|YP_513572.1| - 2.5 8.5 8.9 5.7 7.3 5.8 1.8 1 1 0 1 1 1 0 SlyX Sigma70_r2 PF04542.9 gi|89256211|ref|YP_513573.1| - 5.6e-20 70.7 0.0 2.1e-19 68.8 0.0 1.9 2 0 0 2 2 2 1 Sigma-70 region 2 Sigma70_r4 PF04545.11 gi|89256211|ref|YP_513573.1| - 3.4e-16 58.2 0.6 1.8e-12 46.3 0.0 2.8 3 0 0 3 3 3 2 Sigma-70, region 4 HTH_28 PF13518.1 gi|89256211|ref|YP_513573.1| - 4.5e-05 23.3 0.0 0.14 12.1 0.0 2.6 2 0 0 2 2 2 2 Helix-turn-helix domain Sigma70_r1_2 PF00140.15 gi|89256211|ref|YP_513573.1| - 0.00052 19.6 0.0 0.0014 18.2 0.0 1.8 1 0 0 1 1 1 1 Sigma-70 factor, region 1.2 Sigma70_r3 PF04539.11 gi|89256211|ref|YP_513573.1| - 0.00062 19.6 1.1 1 9.2 0.0 2.6 2 0 0 2 2 2 2 Sigma-70 region 3 HTH_25 PF13413.1 gi|89256211|ref|YP_513573.1| - 0.00088 18.8 1.4 0.011 15.3 0.1 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|89256211|ref|YP_513573.1| - 0.0017 18.1 0.3 1.9 8.3 0.1 2.6 2 0 0 2 2 2 2 Helix-turn-helix HTH_10 PF04967.7 gi|89256211|ref|YP_513573.1| - 0.0022 17.5 0.5 1.1 8.9 0.0 2.8 2 0 0 2 2 2 1 HTH DNA binding domain HTH_AsnC-type PF13404.1 gi|89256211|ref|YP_513573.1| - 0.0062 16.0 0.0 1.6 8.3 0.0 2.6 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_Tnp_ISL3 PF13542.1 gi|89256211|ref|YP_513573.1| - 0.0082 15.3 0.0 4.2 6.6 0.0 2.5 2 0 0 2 2 2 2 Helix-turn-helix domain of transposase family ISL3 Sigma54_CBD PF04963.8 gi|89256211|ref|YP_513573.1| - 0.02 14.3 1.2 0.077 12.4 0.0 2.3 3 0 0 3 3 3 0 Sigma-54 factor, core binding domain HTH_23 PF13384.1 gi|89256211|ref|YP_513573.1| - 0.02 14.5 0.0 8 6.2 0.0 2.7 2 0 0 2 2 2 0 Homeodomain-like domain HTH_24 PF13412.1 gi|89256211|ref|YP_513573.1| - 0.029 13.7 0.1 1.5 8.3 0.0 2.5 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Cytidylate_kin2 PF13189.1 gi|89256211|ref|YP_513573.1| - 0.06 13.2 2.8 0.29 11.0 0.3 2.2 1 1 1 2 2 2 0 Cytidylate kinase-like family Homeobox PF00046.24 gi|89256211|ref|YP_513573.1| - 0.063 12.8 0.8 5.5 6.6 0.0 3.2 3 0 0 3 3 3 0 Homeobox domain ENT PF03735.9 gi|89256211|ref|YP_513573.1| - 0.071 12.8 0.7 2.5 7.9 0.0 2.6 2 0 0 2 2 2 0 ENT domain GntR PF00392.16 gi|89256211|ref|YP_513573.1| - 0.072 12.5 0.2 13 5.3 0.0 2.6 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family SpoIIID PF12116.3 gi|89256211|ref|YP_513573.1| - 0.074 12.9 0.6 0.51 10.2 0.1 2.4 2 0 0 2 2 2 0 Stage III sporulation protein D 2Fe-2S_thioredx PF01257.14 gi|89256211|ref|YP_513573.1| - 0.084 12.4 0.0 0.23 11.0 0.0 1.7 1 0 0 1 1 1 0 Thioredoxin-like [2Fe-2S] ferredoxin HTH_17 PF12728.2 gi|89256211|ref|YP_513573.1| - 0.11 12.7 0.2 2.2 8.5 0.0 2.6 2 0 0 2 2 2 0 Helix-turn-helix domain DUF3562 PF12085.3 gi|89256211|ref|YP_513573.1| - 0.14 11.9 1.8 7.2 6.5 0.2 3.1 4 0 0 4 4 4 0 Protein of unknown function (DUF3562) IF2_N PF04760.10 gi|89256211|ref|YP_513573.1| - 0.8 9.4 9.8 0.53 9.9 0.7 3.5 4 1 1 5 5 4 0 Translation initiation factor IF-2, N-terminal region EPSP_synthase PF00275.15 gi|89256212|ref|YP_513574.1| - 1.9e-106 356.0 0.1 2.1e-106 355.8 0.1 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Methyltransf_11 PF08241.7 gi|89256213|ref|YP_513575.1| - 0.046 14.2 0.0 0.074 13.5 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_23 PF13489.1 gi|89256213|ref|YP_513575.1| - 0.058 13.1 0.0 0.068 12.8 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain RNase_H PF00075.19 gi|89256214|ref|YP_513576.1| - 1.4e-38 132.1 1.1 1.7e-38 131.9 0.7 1.0 1 0 0 1 1 1 1 RNase H DUF1451 PF07295.6 gi|89256214|ref|YP_513576.1| - 0.032 14.0 0.5 0.041 13.6 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) DUF2465 PF10239.4 gi|89256214|ref|YP_513576.1| - 0.053 12.7 0.2 0.067 12.3 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2465) HSDR_N_2 PF13588.1 gi|89256214|ref|YP_513576.1| - 0.11 12.3 0.0 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 Type I restriction enzyme R protein N terminus (HSDR_N) Asparaginase PF00710.15 gi|89256215|ref|YP_513577.1| - 2.2e-111 371.6 0.0 2.6e-111 371.4 0.0 1.0 1 0 0 1 1 1 1 Asparaginase zf-DNL PF05180.7 gi|89256215|ref|YP_513577.1| - 0.037 13.7 0.0 0.073 12.7 0.0 1.4 1 0 0 1 1 1 0 DNL zinc finger Pro_CA PF00484.14 gi|89256216|ref|YP_513578.1| - 2.7e-43 147.5 0.3 3.4e-43 147.2 0.2 1.1 1 0 0 1 1 1 1 Carbonic anhydrase Lig_chan PF00060.21 gi|89256217|ref|YP_513579.1| - 6.4 6.4 11.6 5.4 6.7 4.5 2.2 2 0 0 2 2 2 0 Ligand-gated ion channel PALP PF00291.20 gi|89256218|ref|YP_513580.1| - 3.3e-05 23.2 0.0 6.4e-05 22.3 0.0 1.3 1 1 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Rubredoxin PF00301.15 gi|89256219|ref|YP_513581.1| - 1.4e-22 79.2 4.6 1.7e-22 79.0 3.2 1.1 1 0 0 1 1 1 1 Rubredoxin zf-Sec23_Sec24 PF04810.10 gi|89256219|ref|YP_513581.1| - 0.017 14.6 0.5 1 8.9 0.0 2.1 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger A2L_zn_ribbon PF08792.5 gi|89256219|ref|YP_513581.1| - 0.023 14.1 1.7 0.67 9.4 0.1 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-Mss51 PF13824.1 gi|89256219|ref|YP_513581.1| - 0.029 14.2 2.1 0.77 9.6 1.4 2.1 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 TF_Zn_Ribbon PF08271.7 gi|89256219|ref|YP_513581.1| - 0.2 11.0 5.9 3.6 6.9 0.1 2.5 2 1 0 2 2 2 0 TFIIB zinc-binding zf-RanBP PF00641.13 gi|89256219|ref|YP_513581.1| - 0.53 9.4 3.0 1.5 8.0 0.3 2.2 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others DDE_Tnp_1_2 PF13586.1 gi|89256221|ref|YP_513583.1| - 4.5e-16 58.7 0.1 1.3e-15 57.3 0.1 1.8 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|89256221|ref|YP_513583.1| - 2.5e-13 50.0 1.1 8.8e-13 48.2 0.7 1.7 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|89256221|ref|YP_513583.1| - 2.2e-09 37.2 0.1 3e-09 36.8 0.1 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF4096 PF13340.1 gi|89256221|ref|YP_513583.1| - 0.00059 19.6 0.0 0.0012 18.6 0.0 1.5 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) UPF0061 PF02696.9 gi|89256222|ref|YP_513584.1| - 9e-85 284.8 2.0 3.3e-82 276.3 0.4 2.0 1 1 0 2 2 2 2 Uncharacterized ACR, YdiU/UPF0061 family DUF3665 PF12427.3 gi|89256222|ref|YP_513584.1| - 0.13 11.6 0.5 0.4 10.1 0.0 2.0 2 0 0 2 2 2 0 Branched-chain amino acid aminotransferase SDF PF00375.13 gi|89256223|ref|YP_513585.1| - 3.1e-97 325.7 48.0 3.7e-97 325.5 33.3 1.0 1 0 0 1 1 1 1 Sodium:dicarboxylate symporter family SIS PF01380.17 gi|89256224|ref|YP_513586.1| - 6.3e-34 116.4 0.6 4.7e-21 74.7 0.1 2.2 2 0 0 2 2 2 2 SIS domain SIS_2 PF13580.1 gi|89256224|ref|YP_513586.1| - 0.023 14.4 0.3 2.5 7.8 0.0 2.8 3 0 0 3 3 3 0 SIS domain Sigma54_activ_2 PF14532.1 gi|89256224|ref|YP_513586.1| - 0.063 13.3 0.2 10 6.1 0.0 2.4 2 0 0 2 2 2 0 Sigma-54 interaction domain Sugar_tr PF00083.19 gi|89256225|ref|YP_513587.1| - 1.3e-85 287.7 40.2 1.4e-85 287.5 27.8 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.11 gi|89256225|ref|YP_513587.1| - 3.2e-32 111.6 40.3 3.2e-32 111.6 27.9 1.6 1 1 1 2 2 2 1 Major Facilitator Superfamily DDE_Tnp_IS1 PF03400.8 gi|89256226|ref|YP_513588.1| - 2.9e-16 59.7 1.8 3.2e-16 59.6 1.3 1.0 1 0 0 1 1 1 1 IS1 transposase CDT1 PF08839.6 gi|89256226|ref|YP_513588.1| - 0.0042 17.0 0.0 0.005 16.7 0.0 1.2 1 0 0 1 1 1 1 DNA replication factor CDT1 like RE_Eco47II PF09553.5 gi|89256226|ref|YP_513588.1| - 0.04 13.0 0.1 0.049 12.7 0.0 1.1 1 0 0 1 1 1 0 Eco47II restriction endonuclease DUF3573 PF12097.3 gi|89256227|ref|YP_513589.1| - 5.7e-166 551.8 22.3 9.2e-166 551.1 15.4 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3573) rRNA_proc-arch PF13234.1 gi|89256227|ref|YP_513589.1| - 0.097 11.8 2.8 0.53 9.3 2.1 1.8 2 0 0 2 2 2 0 rRNA-processing arch domain Snapin_Pallidin PF14712.1 gi|89256227|ref|YP_513589.1| - 0.12 12.6 1.6 0.23 11.7 1.1 1.4 1 0 0 1 1 1 0 Snapin/Pallidin MitMem_reg PF13012.1 gi|89256227|ref|YP_513589.1| - 0.26 11.3 3.6 0.49 10.4 2.5 1.3 1 0 0 1 1 1 0 Maintenance of mitochondrial structure and function DDE_Tnp_1_2 PF13586.1 gi|89256228|ref|YP_513590.1| - 4.7e-16 58.7 0.2 1.3e-15 57.3 0.1 1.8 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|89256228|ref|YP_513590.1| - 2.6e-13 50.0 1.1 8.9e-13 48.2 0.7 1.7 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|89256228|ref|YP_513590.1| - 2.2e-09 37.2 0.1 3e-09 36.7 0.1 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF4096 PF13340.1 gi|89256228|ref|YP_513590.1| - 0.0006 19.6 0.0 0.0012 18.6 0.0 1.5 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) Glyco_hydro_20 PF00728.17 gi|89256229|ref|YP_513591.1| - 3.8e-05 23.0 0.2 3.8e-05 23.0 0.2 1.0 1 0 0 1 1 1 1 Glycosyl hydrolase family 20, catalytic domain Na_H_Exchanger PF00999.16 gi|89256231|ref|YP_513593.1| - 0.00027 19.6 0.7 0.00027 19.6 0.5 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family DUF989 PF06181.6 gi|89256231|ref|YP_513593.1| - 0.0066 15.5 0.8 0.0078 15.3 0.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF989) DUF2806 PF10987.3 gi|89256231|ref|YP_513593.1| - 0.055 12.9 0.1 0.055 12.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2806) Na_H_Exchanger PF00999.16 gi|89256232|ref|YP_513594.1| - 1.2e-19 70.1 8.6 7e-18 64.3 1.5 2.0 1 1 1 2 2 2 2 Sodium/hydrogen exchanger family GcpE PF04551.9 gi|89256233|ref|YP_513595.1| - 1.8e-115 385.6 1.1 2.1e-115 385.3 0.7 1.0 1 0 0 1 1 1 1 GcpE protein Cu-oxidase_4 PF02578.10 gi|89256234|ref|YP_513596.1| - 8.8e-65 218.0 0.0 1e-64 217.8 0.0 1.0 1 0 0 1 1 1 1 Multi-copper polyphenol oxidoreductase laccase PRKCSH-like PF12999.2 gi|89256234|ref|YP_513596.1| - 0.029 13.9 0.2 0.065 12.8 0.1 1.6 1 0 0 1 1 1 0 Glucosidase II beta subunit-like Peptidase_M24 PF00557.19 gi|89256235|ref|YP_513597.1| - 2.2e-40 138.4 0.0 3.8e-40 137.6 0.0 1.4 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|89256235|ref|YP_513597.1| - 2.8e-22 79.6 0.1 9.9e-19 68.1 0.0 2.4 2 0 0 2 2 2 2 Creatinase/Prolidase N-terminal domain Cag12 PF13117.1 gi|89256235|ref|YP_513597.1| - 0.067 13.1 0.3 0.7 9.8 0.0 2.6 2 1 0 2 2 2 0 Cag pathogenicity island protein Cag12 Endonuclease_NS PF01223.18 gi|89256236|ref|YP_513598.1| - 4.4e-52 176.7 0.7 4.4e-52 176.7 0.5 1.5 2 0 0 2 2 2 1 DNA/RNA non-specific endonuclease Endonuclea_NS_2 PF13930.1 gi|89256236|ref|YP_513598.1| - 0.0031 17.5 0.2 0.0091 16.0 0.1 1.8 1 1 0 1 1 1 1 DNA/RNA non-specific endonuclease Beta-lactamase2 PF13354.1 gi|89256237|ref|YP_513599.1| - 3.6e-37 127.7 0.0 4.5e-37 127.4 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase enzyme family Beta-lactamase PF00144.19 gi|89256237|ref|YP_513599.1| - 9e-06 24.9 0.0 0.023 13.7 0.0 2.1 2 0 0 2 2 2 2 Beta-lactamase Ank_2 PF12796.2 gi|89256238|ref|YP_513600.1| - 0.0036 17.6 0.1 0.0076 16.5 0.1 1.6 1 0 0 1 1 1 1 Ankyrin repeats (3 copies) Ank_3 PF13606.1 gi|89256238|ref|YP_513600.1| - 0.06 13.6 0.0 12 6.4 0.0 3.1 2 0 0 2 2 2 0 Ankyrin repeat VirK PF06903.7 gi|89256239|ref|YP_513601.1| - 2.4e-21 75.3 0.0 2.9e-21 75.1 0.0 1.1 1 0 0 1 1 1 1 VirK protein DUF3316 PF11777.3 gi|89256239|ref|YP_513601.1| - 0.012 15.4 0.2 0.14 11.9 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3316) CN_hydrolase PF00795.17 gi|89256240|ref|YP_513602.1| - 6.2e-17 61.5 0.0 1e-16 60.8 0.0 1.4 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase RseC_MucC PF04246.7 gi|89256240|ref|YP_513602.1| - 0.033 13.7 0.6 0.033 13.7 0.4 3.0 2 1 1 3 3 3 0 Positive regulator of sigma(E), RseC/MucC CorC_HlyC PF03471.12 gi|89256241|ref|YP_513603.1| - 1.1e-22 79.6 0.8 3.1e-22 78.1 0.1 2.0 2 0 0 2 2 2 1 Transporter associated domain CBS PF00571.23 gi|89256241|ref|YP_513603.1| - 4.9e-17 61.4 1.4 3.7e-08 33.0 0.1 2.7 3 0 0 3 3 3 2 CBS domain DUF512 PF04459.7 gi|89256241|ref|YP_513603.1| - 0.028 13.4 0.3 0.049 12.6 0.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF512) GTPase_Cys_C PF12631.2 gi|89256241|ref|YP_513603.1| - 0.089 13.2 0.1 14 6.1 0.0 3.1 3 0 0 3 3 3 0 Catalytic cysteine-containing C-terminus of GTPase, MnmE UPF0054 PF02130.12 gi|89256242|ref|YP_513604.1| - 1.6e-44 150.6 2.3 2.2e-44 150.2 1.6 1.2 1 1 0 1 1 1 1 Uncharacterized protein family UPF0054 PhoH PF02562.11 gi|89256243|ref|YP_513605.1| - 3.6e-91 303.9 0.3 5.2e-91 303.4 0.2 1.2 1 0 0 1 1 1 1 PhoH-like protein AAA_30 PF13604.1 gi|89256243|ref|YP_513605.1| - 1.5e-07 31.2 0.1 7.7e-07 28.8 0.0 2.1 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|89256243|ref|YP_513605.1| - 6.1e-06 25.7 0.1 1.1e-05 24.8 0.1 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_19 PF13245.1 gi|89256243|ref|YP_513605.1| - 2e-05 24.2 0.2 6.6e-05 22.5 0.2 1.8 1 0 0 1 1 1 1 Part of AAA domain Zot PF05707.7 gi|89256243|ref|YP_513605.1| - 0.017 14.5 1.0 0.12 11.8 0.1 2.5 2 1 0 2 2 2 0 Zonular occludens toxin (Zot) AAA_22 PF13401.1 gi|89256243|ref|YP_513605.1| - 0.035 14.2 0.5 0.27 11.3 0.1 2.5 1 1 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|89256243|ref|YP_513605.1| - 0.039 13.3 0.0 0.092 12.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain Phage_tail_2 PF06199.6 gi|89256243|ref|YP_513605.1| - 0.15 12.0 2.0 0.45 10.5 0.3 2.0 2 0 0 2 2 2 0 Phage major tail protein 2 Radical_SAM PF04055.16 gi|89256244|ref|YP_513606.1| - 4.5e-29 101.7 0.1 7.8e-29 100.9 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily UPF0004 PF00919.15 gi|89256244|ref|YP_513606.1| - 6.5e-28 96.4 0.1 1.4e-27 95.3 0.0 1.6 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM PF01938.15 gi|89256244|ref|YP_513606.1| - 1.8e-16 59.6 0.1 3.3e-16 58.7 0.0 1.5 1 0 0 1 1 1 1 TRAM domain Fer4_12 PF13353.1 gi|89256244|ref|YP_513606.1| - 0.064 13.3 0.1 0.36 10.9 0.0 2.2 2 0 0 2 2 2 0 4Fe-4S single cluster domain Methyltransf_3 PF01596.12 gi|89256245|ref|YP_513607.1| - 6.4e-32 110.2 0.6 8.1e-32 109.9 0.4 1.1 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_24 PF13578.1 gi|89256245|ref|YP_513607.1| - 2.7e-12 47.4 0.0 7.7e-12 45.9 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|89256245|ref|YP_513607.1| - 5.4e-07 30.1 0.0 8.4e-07 29.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|89256245|ref|YP_513607.1| - 7e-07 28.9 0.1 1.2e-06 28.1 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.12 gi|89256245|ref|YP_513607.1| - 3.5e-06 26.2 0.0 6.9e-06 25.2 0.0 1.4 1 1 0 1 1 1 1 Putative methyltransferase CmcI PF04989.7 gi|89256245|ref|YP_513607.1| - 0.014 14.6 0.0 0.02 14.2 0.0 1.4 1 0 0 1 1 1 0 Cephalosporin hydroxylase Methyltransf_25 PF13649.1 gi|89256245|ref|YP_513607.1| - 0.019 15.2 0.1 0.05 13.9 0.0 1.7 2 0 0 2 2 2 0 Methyltransferase domain GidB PF02527.10 gi|89256245|ref|YP_513607.1| - 0.03 13.4 0.0 0.08 12.0 0.0 1.7 1 1 0 2 2 2 0 rRNA small subunit methyltransferase G TylF PF05711.6 gi|89256245|ref|YP_513607.1| - 0.048 12.7 0.1 0.066 12.2 0.1 1.3 1 1 0 1 1 1 0 Macrocin-O-methyltransferase (TylF) Acid_phosphat_B PF03767.9 gi|89256246|ref|YP_513608.1| - 0.00051 19.4 0.1 0.00054 19.3 0.1 1.0 1 0 0 1 1 1 1 HAD superfamily, subfamily IIIB (Acid phosphatase) DUF3958 PF13125.1 gi|89256246|ref|YP_513608.1| - 0.13 12.1 0.0 0.14 12.0 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3958) TK PF00265.13 gi|89256247|ref|YP_513609.1| - 1.6e-42 145.0 0.2 2e-42 144.7 0.1 1.1 1 0 0 1 1 1 1 Thymidine kinase AAA_22 PF13401.1 gi|89256247|ref|YP_513609.1| - 0.00088 19.4 0.0 0.002 18.2 0.0 1.6 2 0 0 2 2 2 1 AAA domain FAD_binding_4 PF01565.18 gi|89256247|ref|YP_513609.1| - 0.015 14.8 0.0 0.021 14.2 0.0 1.3 1 0 0 1 1 1 0 FAD binding domain DUF512 PF04459.7 gi|89256247|ref|YP_513609.1| - 0.051 12.6 0.0 0.068 12.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF512) Pneumo_M2 PF07380.6 gi|89256247|ref|YP_513609.1| - 0.095 12.7 0.2 0.19 11.7 0.1 1.5 1 0 0 1 1 1 0 Pneumovirus M2 protein CobA_CobO_BtuR PF02572.10 gi|89256247|ref|YP_513609.1| - 0.1 12.1 0.2 0.41 10.2 0.2 1.9 1 1 0 1 1 1 0 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Trigger_N PF05697.8 gi|89256248|ref|YP_513610.1| - 2.6e-41 140.8 6.6 2.6e-41 140.8 4.6 3.2 3 0 0 3 3 3 1 Bacterial trigger factor protein (TF) Trigger_C PF05698.9 gi|89256248|ref|YP_513610.1| - 1e-23 83.9 26.0 6.3e-23 81.3 10.6 3.8 4 0 0 4 4 4 2 Bacterial trigger factor protein (TF) C-terminus FKBP_C PF00254.23 gi|89256248|ref|YP_513610.1| - 2e-17 62.9 1.8 2e-17 62.9 1.3 2.7 4 0 0 4 4 4 1 FKBP-type peptidyl-prolyl cis-trans isomerase DUF328 PF03883.9 gi|89256248|ref|YP_513610.1| - 0.0078 15.5 0.0 0.0078 15.5 0.0 2.1 3 0 0 3 3 3 1 Protein of unknown function (DUF328) NatB_MDM20 PF09797.4 gi|89256248|ref|YP_513610.1| - 0.028 13.1 2.2 0.018 13.7 0.5 1.4 2 0 0 2 2 2 0 N-acetyltransferase B complex (NatB) non catalytic subunit HD_assoc PF13286.1 gi|89256248|ref|YP_513610.1| - 0.32 11.2 2.4 0.54 10.5 0.3 2.5 2 1 0 2 2 2 0 Phosphohydrolase-associated domain DUF2762 PF10960.3 gi|89256248|ref|YP_513610.1| - 2.4 7.9 8.5 0.19 11.4 0.3 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF2762) CLP_protease PF00574.18 gi|89256249|ref|YP_513611.1| - 6.7e-85 283.3 0.0 7.8e-85 283.1 0.0 1.0 1 0 0 1 1 1 1 Clp protease AAA_2 PF07724.9 gi|89256250|ref|YP_513612.1| - 3.6e-48 163.6 0.2 6.9e-48 162.7 0.2 1.5 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) ClpB_D2-small PF10431.4 gi|89256250|ref|YP_513612.1| - 4.5e-16 58.5 0.5 1.4e-15 56.9 0.3 1.9 1 0 0 1 1 1 1 C-terminal, D2-small domain, of ClpB protein AAA PF00004.24 gi|89256250|ref|YP_513612.1| - 7.5e-16 58.5 0.1 1.9e-15 57.2 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) zf-C4_ClpX PF06689.8 gi|89256250|ref|YP_513612.1| - 1.6e-14 53.1 6.9 4.4e-14 51.7 4.8 1.8 1 0 0 1 1 1 1 ClpX C4-type zinc finger AAA_5 PF07728.9 gi|89256250|ref|YP_513612.1| - 7.2e-08 32.2 0.1 2e-06 27.5 0.0 3.0 3 1 0 3 3 3 1 AAA domain (dynein-related subfamily) RuvB_N PF05496.7 gi|89256250|ref|YP_513612.1| - 4.2e-06 25.9 0.1 1.5e-05 24.1 0.0 1.9 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus Mg_chelatase PF01078.16 gi|89256250|ref|YP_513612.1| - 8.7e-06 25.0 0.1 0.0025 17.0 0.1 2.9 2 1 0 3 3 3 1 Magnesium chelatase, subunit ChlI AAA_22 PF13401.1 gi|89256250|ref|YP_513612.1| - 2.6e-05 24.3 0.2 0.0003 20.9 0.1 2.4 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|89256250|ref|YP_513612.1| - 4.1e-05 24.3 0.1 0.00012 22.8 0.0 2.0 2 0 0 2 2 1 1 AAA domain Sigma54_activat PF00158.21 gi|89256250|ref|YP_513612.1| - 6.8e-05 22.4 0.0 0.014 14.9 0.0 2.5 2 0 0 2 2 2 1 Sigma-54 interaction domain Sigma54_activ_2 PF14532.1 gi|89256250|ref|YP_513612.1| - 0.00012 22.1 0.0 0.00057 19.9 0.0 2.2 2 1 0 2 2 2 1 Sigma-54 interaction domain AAA_16 PF13191.1 gi|89256250|ref|YP_513612.1| - 0.00033 20.6 0.1 0.0051 16.8 0.0 2.4 1 1 1 2 2 2 1 AAA ATPase domain MCM PF00493.18 gi|89256250|ref|YP_513612.1| - 0.00043 19.1 0.1 0.00095 18.0 0.1 1.5 1 0 0 1 1 1 1 MCM2/3/5 family AAA_14 PF13173.1 gi|89256250|ref|YP_513612.1| - 0.00092 19.1 0.2 0.0029 17.5 0.0 1.9 2 0 0 2 2 1 1 AAA domain IstB_IS21 PF01695.12 gi|89256250|ref|YP_513612.1| - 0.0013 18.1 0.0 0.0024 17.3 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein T2SE PF00437.15 gi|89256250|ref|YP_513612.1| - 0.0014 17.5 0.0 0.0028 16.5 0.0 1.5 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_18 PF13238.1 gi|89256250|ref|YP_513612.1| - 0.0018 18.5 1.2 0.0094 16.2 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|89256250|ref|YP_513612.1| - 0.002 17.9 0.0 0.0048 16.7 0.0 1.7 1 0 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|89256250|ref|YP_513612.1| - 0.0036 16.9 0.0 0.031 13.9 0.0 2.3 2 0 0 2 2 2 1 NACHT domain ResIII PF04851.10 gi|89256250|ref|YP_513612.1| - 0.0044 16.8 1.1 0.046 13.5 0.1 2.4 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit DNA_pol3_delta2 PF13177.1 gi|89256250|ref|YP_513612.1| - 0.014 15.0 0.1 0.068 12.8 0.0 2.2 1 1 1 2 2 2 0 DNA polymerase III, delta subunit DEAD PF00270.24 gi|89256250|ref|YP_513612.1| - 0.014 14.8 0.2 0.043 13.2 0.2 2.1 1 1 0 1 1 1 0 DEAD/DEAH box helicase UPF0079 PF02367.12 gi|89256250|ref|YP_513612.1| - 0.016 14.8 0.1 0.036 13.7 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 FtsK_SpoIIIE PF01580.13 gi|89256250|ref|YP_513612.1| - 0.017 14.6 0.0 0.043 13.2 0.0 1.6 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_29 PF13555.1 gi|89256250|ref|YP_513612.1| - 0.027 13.9 0.0 0.056 12.9 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_24 PF13479.1 gi|89256250|ref|YP_513612.1| - 0.037 13.6 0.1 0.071 12.6 0.1 1.5 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|89256250|ref|YP_513612.1| - 0.054 13.7 0.1 0.26 11.5 0.1 1.9 1 1 0 1 1 1 0 ABC transporter Sec7 PF01369.15 gi|89256250|ref|YP_513612.1| - 0.058 13.0 0.3 0.16 11.6 0.1 1.8 2 0 0 2 2 2 0 Sec7 domain DUF4428 PF14471.1 gi|89256250|ref|YP_513612.1| - 0.065 12.9 5.4 0.14 11.9 2.3 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4428) RNA_helicase PF00910.17 gi|89256250|ref|YP_513612.1| - 0.065 13.4 0.0 0.15 12.2 0.0 1.7 1 0 0 1 1 1 0 RNA helicase AAA_19 PF13245.1 gi|89256250|ref|YP_513612.1| - 0.073 12.8 0.0 0.16 11.7 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain AAA_23 PF13476.1 gi|89256250|ref|YP_513612.1| - 2.9 8.1 10.5 11 6.2 6.8 2.3 1 1 0 1 1 1 0 AAA domain Lon_C PF05362.8 gi|89256251|ref|YP_513613.1| - 1.1e-92 308.9 1.5 2.3e-92 307.9 1.1 1.6 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain LON PF02190.11 gi|89256251|ref|YP_513613.1| - 8.8e-33 113.7 2.5 8.8e-33 113.7 1.7 2.1 2 0 0 2 2 2 1 ATP-dependent protease La (LON) domain AAA PF00004.24 gi|89256251|ref|YP_513613.1| - 2.2e-19 69.9 0.0 9.5e-19 67.9 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|89256251|ref|YP_513613.1| - 1.5e-11 44.1 0.0 3.7e-11 42.9 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) ChlI PF13541.1 gi|89256251|ref|YP_513613.1| - 4.8e-09 35.7 0.0 1.1e-08 34.6 0.0 1.6 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase AAA_16 PF13191.1 gi|89256251|ref|YP_513613.1| - 1.5e-05 25.1 0.1 6.5e-05 22.9 0.0 2.1 2 1 0 2 2 2 1 AAA ATPase domain AAA_14 PF13173.1 gi|89256251|ref|YP_513613.1| - 0.00017 21.4 0.0 0.0034 17.2 0.0 3.2 2 1 1 3 3 3 1 AAA domain AAA_2 PF07724.9 gi|89256251|ref|YP_513613.1| - 0.001 18.9 0.0 0.0037 17.2 0.0 1.9 1 1 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_22 PF13401.1 gi|89256251|ref|YP_513613.1| - 0.0016 18.6 0.1 0.02 15.0 0.1 2.7 1 1 0 1 1 1 1 AAA domain RuvB_N PF05496.7 gi|89256251|ref|YP_513613.1| - 0.0016 17.5 0.0 0.0049 15.9 0.0 1.8 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_17 PF13207.1 gi|89256251|ref|YP_513613.1| - 0.0019 18.9 5.7 0.0045 17.7 0.1 3.4 2 2 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|89256251|ref|YP_513613.1| - 0.007 16.6 4.1 0.02 15.2 0.0 3.3 2 1 1 3 3 3 1 AAA domain IstB_IS21 PF01695.12 gi|89256251|ref|YP_513613.1| - 0.012 15.0 0.0 0.03 13.7 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_3 PF07726.6 gi|89256251|ref|YP_513613.1| - 0.013 15.0 0.0 0.052 13.1 0.0 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Torsin PF06309.6 gi|89256251|ref|YP_513613.1| - 0.026 14.4 0.0 0.064 13.1 0.0 1.6 1 0 0 1 1 1 0 Torsin SKI PF01202.17 gi|89256251|ref|YP_513613.1| - 0.029 14.2 1.9 0.85 9.4 0.0 2.7 2 0 0 2 2 2 0 Shikimate kinase NACHT PF05729.7 gi|89256251|ref|YP_513613.1| - 0.049 13.2 0.0 1.7 8.2 0.0 2.4 2 0 0 2 2 2 0 NACHT domain AAA_33 PF13671.1 gi|89256251|ref|YP_513613.1| - 0.075 12.9 0.0 0.19 11.6 0.0 1.7 1 0 0 1 1 1 0 AAA domain Bac_DNA_binding PF00216.16 gi|89256252|ref|YP_513614.1| - 9.1e-36 121.7 1.3 1e-35 121.6 0.9 1.0 1 0 0 1 1 1 1 Bacterial DNA-binding protein DUF4496 PF14908.1 gi|89256252|ref|YP_513614.1| - 0.00036 20.4 0.0 0.0005 19.9 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4496) VWA_3 PF13768.1 gi|89256252|ref|YP_513614.1| - 0.013 15.2 0.0 0.014 15.0 0.0 1.1 1 0 0 1 1 1 0 von Willebrand factor type A domain HU-DNA_bdg PF14848.1 gi|89256252|ref|YP_513614.1| - 0.051 13.3 0.2 0.068 12.9 0.1 1.5 1 1 0 1 1 1 0 DNA-binding domain SurA_N_2 PF13623.1 gi|89256253|ref|YP_513615.1| - 1.1e-35 122.7 3.3 1.1e-35 122.7 2.3 3.7 2 2 1 3 3 3 2 SurA N-terminal domain SurA_N_3 PF13624.1 gi|89256253|ref|YP_513615.1| - 5.9e-16 58.8 1.8 5.9e-16 58.8 1.3 2.7 3 2 0 3 3 3 1 SurA N-terminal domain Rotamase_2 PF13145.1 gi|89256253|ref|YP_513615.1| - 2.3e-11 44.3 22.4 1.8e-06 28.5 5.3 3.7 4 0 0 4 4 4 3 PPIC-type PPIASE domain DUF3235 PF11574.3 gi|89256253|ref|YP_513615.1| - 5.1 7.4 7.1 3 8.1 0.1 3.4 3 1 0 3 3 3 0 Protein of unknown function (DUF3235) IPPT PF01715.12 gi|89256254|ref|YP_513616.1| - 2.9e-86 288.5 0.2 3.7e-86 288.2 0.2 1.0 1 0 0 1 1 1 1 IPP transferase IPT PF01745.11 gi|89256254|ref|YP_513616.1| - 6.3e-09 35.3 0.1 1.6e-06 27.5 0.0 2.2 2 0 0 2 2 2 2 Isopentenyl transferase AAA_17 PF13207.1 gi|89256254|ref|YP_513616.1| - 1e-06 29.5 0.2 2.3e-06 28.4 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|89256254|ref|YP_513616.1| - 0.016 15.5 0.7 0.046 14.0 0.0 2.2 3 1 0 3 3 3 0 AAA domain CENP-K PF11802.3 gi|89256254|ref|YP_513616.1| - 0.016 14.4 0.4 0.023 13.9 0.3 1.3 1 0 0 1 1 1 0 Centromere-associated protein K AAA_33 PF13671.1 gi|89256254|ref|YP_513616.1| - 0.039 13.8 0.0 0.12 12.2 0.0 1.9 2 1 0 2 2 2 0 AAA domain Zeta_toxin PF06414.7 gi|89256254|ref|YP_513616.1| - 0.047 12.7 0.1 0.11 11.5 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin AAA PF00004.24 gi|89256254|ref|YP_513616.1| - 0.079 13.1 0.3 0.36 11.0 0.0 2.2 2 1 1 3 3 3 0 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.7 gi|89256254|ref|YP_513616.1| - 0.13 11.3 0.1 0.24 10.4 0.1 1.4 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus LSM PF01423.17 gi|89256255|ref|YP_513617.1| - 2.2e-09 36.7 0.0 3.7e-09 35.9 0.0 1.3 1 0 0 1 1 1 1 LSM domain Carmo_coat_C PF08462.5 gi|89256255|ref|YP_513617.1| - 0.0042 16.9 0.0 0.0052 16.6 0.0 1.2 1 0 0 1 1 1 1 Carmovirus coat protein MMR_HSR1 PF01926.18 gi|89256256|ref|YP_513618.1| - 5.7e-20 71.4 0.1 1.5e-19 70.0 0.1 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP-bdg_N PF13167.1 gi|89256256|ref|YP_513618.1| - 9.6e-15 54.4 0.1 6.1e-14 51.9 0.0 2.3 2 0 0 2 2 2 1 GTP-binding GTPase N-terminal GTP_EFTU PF00009.22 gi|89256256|ref|YP_513618.1| - 5.3e-05 22.7 0.1 0.17 11.2 0.0 2.5 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain Dynamin_N PF00350.18 gi|89256256|ref|YP_513618.1| - 0.00021 21.1 0.1 0.02 14.7 0.0 2.4 1 1 1 2 2 2 1 Dynamin family Arf PF00025.16 gi|89256256|ref|YP_513618.1| - 0.001 18.3 0.8 0.0086 15.3 0.5 2.2 1 1 0 1 1 1 1 ADP-ribosylation factor family FeoB_N PF02421.13 gi|89256256|ref|YP_513618.1| - 0.0045 16.2 0.4 0.012 14.9 0.3 1.9 1 1 0 1 1 1 1 Ferrous iron transport protein B MobB PF03205.9 gi|89256256|ref|YP_513618.1| - 0.019 14.6 0.0 0.04 13.6 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B cobW PF02492.14 gi|89256256|ref|YP_513618.1| - 0.038 13.4 1.7 2 7.7 0.2 2.5 1 1 1 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain ABC_tran PF00005.22 gi|89256256|ref|YP_513618.1| - 0.088 13.1 0.3 0.78 10.0 0.0 2.5 1 1 1 2 2 2 0 ABC transporter FAD_binding_3 PF01494.14 gi|89256257|ref|YP_513619.1| - 0.047 12.7 0.0 0.06 12.3 0.0 1.1 1 0 0 1 1 1 0 FAD binding domain DUF3243 PF11588.3 gi|89256257|ref|YP_513619.1| - 0.056 13.4 0.0 0.082 12.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3243) FAD_binding_3 PF01494.14 gi|89256258|ref|YP_513620.1| - 0.0033 16.5 0.0 0.0033 16.5 0.0 1.1 1 0 0 1 1 1 1 FAD binding domain Lycopene_cycl PF05834.7 gi|89256258|ref|YP_513620.1| - 0.12 11.2 0.0 0.15 10.9 0.0 1.1 1 0 0 1 1 1 0 Lycopene cyclase protein NAD_binding_8 PF13450.1 gi|89256259|ref|YP_513621.1| - 6.5e-07 29.2 0.0 7e-07 29.1 0.0 1.2 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|89256259|ref|YP_513621.1| - 0.00073 18.5 0.0 0.00083 18.3 0.0 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox PF00070.22 gi|89256259|ref|YP_513621.1| - 0.0023 18.2 0.0 0.0027 18.0 0.0 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FMO-like PF00743.14 gi|89256259|ref|YP_513621.1| - 0.0048 15.1 0.0 0.005 15.0 0.0 1.0 1 0 0 1 1 1 1 Flavin-binding monooxygenase-like FAD_binding_3 PF01494.14 gi|89256259|ref|YP_513621.1| - 0.045 12.7 0.0 0.054 12.5 0.0 1.0 1 0 0 1 1 1 0 FAD binding domain Thi4 PF01946.12 gi|89256259|ref|YP_513621.1| - 0.13 11.3 0.0 0.13 11.3 0.0 1.0 1 0 0 1 1 1 0 Thi4 family Band_7 PF01145.20 gi|89256260|ref|YP_513622.1| - 9.5e-30 103.8 3.5 1.6e-29 103.1 2.4 1.4 1 0 0 1 1 1 1 SPFH domain / Band 7 family HflK_N PF12221.3 gi|89256260|ref|YP_513622.1| - 0.00011 21.8 0.2 0.00024 20.7 0.1 1.6 1 0 0 1 1 1 1 Bacterial membrane protein N terminal BNIP3 PF06553.7 gi|89256260|ref|YP_513622.1| - 0.0013 18.1 0.1 0.0037 16.6 0.0 1.7 1 0 0 1 1 1 1 BNIP3 DUF2956 PF11169.3 gi|89256260|ref|YP_513622.1| - 0.037 13.9 0.4 0.097 12.6 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2956) Band_7 PF01145.20 gi|89256261|ref|YP_513623.1| - 1.4e-32 113.0 4.8 1.4e-32 113.0 3.3 1.8 1 1 1 2 2 2 1 SPFH domain / Band 7 family Band_7_1 PF13421.1 gi|89256261|ref|YP_513623.1| - 0.00083 18.9 2.0 0.0078 15.7 0.6 2.3 1 1 0 2 2 2 1 SPFH domain-Band 7 family SBP_bac_5 PF00496.17 gi|89256261|ref|YP_513623.1| - 0.019 13.7 1.7 1.3 7.7 0.0 2.1 1 1 1 2 2 2 0 Bacterial extracellular solute-binding proteins, family 5 Middle DUF1315 PF07023.7 gi|89256261|ref|YP_513623.1| - 0.032 14.1 0.1 0.26 11.1 0.0 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF1315) ThylakoidFormat PF11264.3 gi|89256261|ref|YP_513623.1| - 0.1 12.2 5.5 0.068 12.7 1.7 2.1 1 1 1 2 2 2 0 Thylakoid formation protein Coleoptericin PF06286.6 gi|89256261|ref|YP_513623.1| - 0.36 10.7 1.8 0.63 9.9 0.0 2.0 2 0 0 2 2 2 0 Coleoptericin DUF1312 PF07009.6 gi|89256261|ref|YP_513623.1| - 1.5 8.6 5.0 1.2 8.9 0.1 2.9 3 1 1 4 4 4 0 Protein of unknown function (DUF1312) DivIVA PF05103.8 gi|89256261|ref|YP_513623.1| - 1.6 8.7 9.8 1.1 9.2 5.2 1.9 1 1 0 1 1 1 0 DivIVA protein LMWPc PF01451.16 gi|89256262|ref|YP_513624.1| - 7.1e-32 110.6 0.0 8.1e-32 110.4 0.0 1.0 1 0 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase CUE PF02845.11 gi|89256262|ref|YP_513624.1| - 0.085 12.3 0.1 0.18 11.3 0.0 1.6 1 0 0 1 1 1 0 CUE domain MMR_HSR1 PF01926.18 gi|89256263|ref|YP_513625.1| - 6.8e-17 61.4 0.0 9.6e-17 61.0 0.0 1.3 1 1 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|89256263|ref|YP_513625.1| - 1e-06 28.0 0.0 1.3e-06 27.8 0.0 1.2 1 0 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|89256263|ref|YP_513625.1| - 2.9e-06 26.8 0.0 6e-05 22.5 0.0 2.1 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain SRPRB PF09439.5 gi|89256263|ref|YP_513625.1| - 0.00018 20.7 0.0 0.0004 19.6 0.0 1.4 1 1 0 1 1 1 1 Signal recognition particle receptor beta subunit DUF258 PF03193.11 gi|89256263|ref|YP_513625.1| - 0.00023 20.3 0.0 0.00041 19.5 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 Dynamin_N PF00350.18 gi|89256263|ref|YP_513625.1| - 0.00041 20.2 0.0 0.61 9.8 0.0 2.3 1 1 1 2 2 2 2 Dynamin family FtsK_SpoIIIE PF01580.13 gi|89256263|ref|YP_513625.1| - 0.054 12.9 0.0 0.34 10.3 0.0 2.0 1 1 1 2 2 2 0 FtsK/SpoIIIE family Pertactin PF03212.9 gi|89256263|ref|YP_513625.1| - 0.1 12.3 0.1 3.6 7.3 0.0 2.3 2 0 0 2 2 2 0 Pertactin LeuA_dimer PF08502.5 gi|89256264|ref|YP_513626.1| - 3.7e-09 36.4 0.1 4e-09 36.3 0.1 1.0 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain RE_SacI PF09566.5 gi|89256264|ref|YP_513626.1| - 0.0044 16.0 0.7 0.0049 15.8 0.5 1.0 1 0 0 1 1 1 1 SacI restriction endonuclease LeuA_dimer PF08502.5 gi|89256265|ref|YP_513627.1| - 3.4e-05 23.6 0.1 3.4e-05 23.6 0.0 1.0 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain ACT_5 PF13710.1 gi|89256266|ref|YP_513628.1| - 1.3e-09 37.7 1.7 1.7e-09 37.3 1.2 1.2 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.1 gi|89256266|ref|YP_513628.1| - 5.9e-05 23.3 3.1 8.6e-05 22.8 2.2 1.2 1 0 0 1 1 1 1 ACT domain ACT PF01842.20 gi|89256266|ref|YP_513628.1| - 0.00012 21.5 0.6 0.0002 20.7 0.4 1.4 1 0 0 1 1 1 1 ACT domain Streptin-Immun PF11083.3 gi|89256266|ref|YP_513628.1| - 0.0044 16.9 0.4 0.006 16.5 0.3 1.3 1 0 0 1 1 1 1 Lantibiotic streptin immunity protein DUF4041 PF13250.1 gi|89256266|ref|YP_513628.1| - 0.27 10.8 2.4 0.55 9.8 0.3 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4041) P2 PF07194.6 gi|89256266|ref|YP_513628.1| - 0.31 10.9 1.9 0.44 10.4 0.7 1.8 1 1 1 2 2 2 0 P2 response regulator binding domain IlvN PF07991.7 gi|89256267|ref|YP_513629.1| - 4.1e-46 156.3 0.1 6.2e-46 155.7 0.0 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain IlvC PF01450.14 gi|89256267|ref|YP_513629.1| - 2.3e-44 150.8 0.1 4.7e-44 149.8 0.0 1.5 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain NAD_binding_2 PF03446.10 gi|89256267|ref|YP_513629.1| - 2.7e-05 24.0 0.0 5.9e-05 22.9 0.0 1.6 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|89256267|ref|YP_513629.1| - 0.0043 17.4 0.2 0.012 16.0 0.1 1.8 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|89256267|ref|YP_513629.1| - 0.033 13.3 0.1 0.059 12.5 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CarD_CdnL_TRCF PF02559.11 gi|89256268|ref|YP_513630.1| - 9.8e-27 92.8 0.3 4.3e-26 90.8 0.2 2.2 1 0 0 1 1 1 1 CarD-like/TRCF domain TRCF PF03461.10 gi|89256268|ref|YP_513630.1| - 6.5e-25 87.0 0.8 3.1e-24 84.8 0.5 2.3 1 0 0 1 1 1 1 TRCF domain DEAD PF00270.24 gi|89256268|ref|YP_513630.1| - 1.5e-23 83.1 5.7 1.2e-22 80.1 0.7 3.0 3 0 0 3 3 3 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|89256268|ref|YP_513630.1| - 4.5e-18 64.8 2.9 1.4e-15 56.8 0.0 3.2 3 0 0 3 3 3 2 Helicase conserved C-terminal domain ResIII PF04851.10 gi|89256268|ref|YP_513630.1| - 9.2e-12 45.1 1.7 3.9e-11 43.1 1.2 2.1 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_22 PF13401.1 gi|89256268|ref|YP_513630.1| - 3e-05 24.1 1.2 0.0057 16.8 0.1 2.9 2 0 0 2 2 2 1 AAA domain Glyco_tran_WecB PF03808.8 gi|89256268|ref|YP_513630.1| - 0.035 13.5 0.6 0.14 11.5 0.0 2.2 3 0 0 3 3 3 0 Glycosyl transferase WecB/TagA/CpsF family UB2H PF14814.1 gi|89256268|ref|YP_513630.1| - 0.039 13.6 0.0 0.15 11.7 0.0 2.1 1 1 0 1 1 1 0 Bifunctional transglycosylase second domain AAA_30 PF13604.1 gi|89256268|ref|YP_513630.1| - 0.18 11.3 0.0 0.52 9.8 0.0 1.7 1 1 0 1 1 1 0 AAA domain Bax1-I PF01027.15 gi|89256269|ref|YP_513631.1| - 2.6e-35 121.8 35.4 3e-35 121.6 24.5 1.0 1 0 0 1 1 1 1 Inhibitor of apoptosis-promoting Bax1 DUF1841 PF08897.6 gi|89256271|ref|YP_513633.1| - 1.3e-49 167.4 3.2 1.5e-49 167.3 2.2 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1841) HhH-GPD PF00730.20 gi|89256272|ref|YP_513634.1| - 6.7e-20 71.3 0.1 9.5e-20 70.9 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|89256272|ref|YP_513634.1| - 1.5e-07 30.6 0.0 3.5e-07 29.5 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.4 gi|89256272|ref|YP_513634.1| - 0.00054 20.0 2.5 0.00091 19.3 1.8 1.4 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH_5 PF14520.1 gi|89256272|ref|YP_513634.1| - 0.017 15.2 0.1 1.3 9.2 0.0 2.3 2 0 0 2 2 2 0 Helix-hairpin-helix domain Fer4_21 PF14697.1 gi|89256273|ref|YP_513635.1| - 3.3e-15 55.6 14.6 3.3e-15 55.6 10.1 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|89256273|ref|YP_513635.1| - 1.2e-10 40.4 19.0 6.8e-08 31.7 2.9 2.9 4 0 0 4 4 3 2 4Fe-4S binding domain FeS PF04060.8 gi|89256273|ref|YP_513635.1| - 1.4e-09 37.3 1.9 4.4e-09 35.7 1.3 1.9 1 0 0 1 1 1 1 Putative Fe-S cluster Fer4_7 PF12838.2 gi|89256273|ref|YP_513635.1| - 4.4e-09 36.5 14.6 0.00043 20.5 0.6 2.8 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|89256273|ref|YP_513635.1| - 2.1e-08 34.2 29.1 7.1e-06 26.1 10.1 2.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|89256273|ref|YP_513635.1| - 3.1e-07 30.1 11.3 3.1e-07 30.1 7.8 3.2 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|89256273|ref|YP_513635.1| - 1.8e-06 27.5 3.3 1.8e-06 27.5 2.3 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|89256273|ref|YP_513635.1| - 1.5e-05 24.5 3.0 1.5e-05 24.5 2.1 3.4 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|89256273|ref|YP_513635.1| - 1.8e-05 25.3 18.3 0.0058 17.3 0.8 3.4 3 1 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_18 PF13746.1 gi|89256273|ref|YP_513635.1| - 0.0012 19.2 22.5 0.0039 17.5 2.9 3.2 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|89256273|ref|YP_513635.1| - 0.0037 17.2 14.6 0.0037 17.2 10.1 2.8 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|89256273|ref|YP_513635.1| - 0.0048 17.2 21.4 0.1 12.9 3.2 3.0 2 2 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|89256273|ref|YP_513635.1| - 0.0064 16.7 21.2 0.038 14.3 1.6 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain DUF3410 PF11890.3 gi|89256273|ref|YP_513635.1| - 0.097 12.3 0.6 0.17 11.5 0.4 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3410) Fer4_11 PF13247.1 gi|89256273|ref|YP_513635.1| - 0.16 11.8 15.5 20 5.1 10.6 2.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|89256273|ref|YP_513635.1| - 1.6 9.3 23.9 1.2 9.8 3.2 4.1 3 2 0 3 3 3 0 4Fe-4S single cluster domain Glutaredoxin2_C PF04399.8 gi|89256274|ref|YP_513636.1| - 2.8e-22 78.7 0.0 3.7e-22 78.3 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin 2, C terminal domain GST_N_3 PF13417.1 gi|89256274|ref|YP_513636.1| - 5.3e-11 42.5 0.0 9.4e-11 41.7 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.1 gi|89256274|ref|YP_513636.1| - 1.3e-07 31.5 0.0 3.2e-07 30.2 0.0 1.7 2 0 0 2 2 2 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.19 gi|89256274|ref|YP_513636.1| - 0.00056 19.8 0.0 0.001 19.0 0.0 1.5 1 0 0 1 1 1 1 Glutaredoxin GST_N PF02798.15 gi|89256274|ref|YP_513636.1| - 0.0019 18.3 0.0 0.0034 17.5 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Syntaxin-18_N PF10496.4 gi|89256274|ref|YP_513636.1| - 0.054 13.3 0.0 0.15 11.9 0.0 1.7 1 0 0 1 1 1 0 SNARE-complex protein Syntaxin-18 N-terminus DUF3906 PF13046.1 gi|89256274|ref|YP_513636.1| - 0.084 12.5 0.0 0.18 11.4 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3906) DUF1993 PF09351.5 gi|89256274|ref|YP_513636.1| - 0.11 12.4 0.0 0.17 11.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1993) GST_C_2 PF13410.1 gi|89256274|ref|YP_513636.1| - 0.13 12.1 0.0 0.22 11.4 0.0 1.4 1 0 0 1 1 1 0 Glutathione S-transferase, C-terminal domain MFS_2 PF13347.1 gi|89256275|ref|YP_513637.1| - 0.0038 15.6 9.8 0.0044 15.4 6.8 1.0 1 0 0 1 1 1 1 MFS/sugar transport protein Gp5_OB PF06714.6 gi|89256276|ref|YP_513638.1| - 0.078 13.0 0.1 0.14 12.1 0.1 1.4 1 0 0 1 1 1 0 Gp5 N-terminal OB domain Vma12 PF11712.3 gi|89256276|ref|YP_513638.1| - 3.3 7.4 6.9 16 5.2 4.8 2.1 1 0 0 1 1 1 0 Endoplasmic reticulum-based factor for assembly of V-ATPase Ferritin PF00210.19 gi|89256277|ref|YP_513639.1| - 4e-36 123.8 3.3 4.6e-36 123.6 2.3 1.0 1 0 0 1 1 1 1 Ferritin-like domain Rubrerythrin PF02915.12 gi|89256277|ref|YP_513639.1| - 5.2e-05 23.5 2.0 7e-05 23.1 1.4 1.1 1 0 0 1 1 1 1 Rubrerythrin RTTN_N PF14726.1 gi|89256277|ref|YP_513639.1| - 0.015 15.8 0.2 0.63 10.6 0.0 2.4 1 1 1 2 2 2 0 Rotatin, an armadillo repeat protein, centriole functioning Lipoprotein_10 PF03202.8 gi|89256277|ref|YP_513639.1| - 0.1 12.5 0.4 0.49 10.4 0.0 2.0 2 0 0 2 2 2 0 Putative mycoplasma lipoprotein, C-terminal region Radical_SAM PF04055.16 gi|89256278|ref|YP_513640.1| - 6.2e-12 45.9 0.0 9.4e-12 45.4 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily DJ-1_PfpI PF01965.19 gi|89256279|ref|YP_513641.1| - 1.2e-13 50.7 0.1 1.6e-13 50.3 0.1 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family Transcrip_reg PF01709.15 gi|89256280|ref|YP_513642.1| - 1.2e-100 335.4 1.9 1.4e-100 335.2 1.3 1.0 1 0 0 1 1 1 1 Transcriptional regulator HEAT_2 PF13646.1 gi|89256280|ref|YP_513642.1| - 0.02 15.1 0.0 0.12 12.7 0.0 2.1 1 1 0 1 1 1 0 HEAT repeats RuvC PF02075.12 gi|89256281|ref|YP_513643.1| - 1e-52 177.8 1.6 1.2e-52 177.6 1.1 1.0 1 0 0 1 1 1 1 Crossover junction endodeoxyribonuclease RuvC DUF3882 PF07066.6 gi|89256281|ref|YP_513643.1| - 0.002 17.9 0.2 0.015 15.1 0.1 1.9 1 1 1 2 2 2 1 Lactococcus phage M3 protein Pox_A22 PF04848.8 gi|89256281|ref|YP_513643.1| - 0.011 15.5 0.2 0.03 14.1 0.1 2.0 1 1 0 1 1 1 0 Poxvirus A22 protein MFS_1 PF07690.11 gi|89256282|ref|YP_513644.1| - 3.7e-33 114.6 43.0 3.7e-33 114.6 29.8 1.6 1 1 0 1 1 1 1 Major Facilitator Superfamily MFS_2 PF13347.1 gi|89256282|ref|YP_513644.1| - 2.4 6.4 41.1 0.19 10.0 12.5 2.8 1 1 1 2 2 2 0 MFS/sugar transport protein RuvA_N PF01330.16 gi|89256283|ref|YP_513645.1| - 4.7e-22 77.5 0.4 1.2e-21 76.2 0.0 1.9 2 0 0 2 2 2 1 RuvA N terminal domain RuvA_C PF07499.8 gi|89256283|ref|YP_513645.1| - 1.2e-11 44.5 0.4 2.7e-11 43.4 0.2 1.6 1 0 0 1 1 1 1 RuvA, C-terminal domain HHH_5 PF14520.1 gi|89256283|ref|YP_513645.1| - 3.3e-10 39.9 1.0 1.2e-07 31.8 0.1 3.3 3 1 0 3 3 3 1 Helix-hairpin-helix domain HHH PF00633.18 gi|89256283|ref|YP_513645.1| - 1.4e-08 33.9 6.2 0.00029 20.3 0.0 4.0 5 0 0 5 5 5 2 Helix-hairpin-helix motif Transposase_20 PF02371.11 gi|89256283|ref|YP_513645.1| - 9.9e-05 22.3 0.1 0.02 15.0 0.0 2.6 2 0 0 2 2 2 1 Transposase IS116/IS110/IS902 family HHH_3 PF12836.2 gi|89256283|ref|YP_513645.1| - 0.0011 18.8 0.0 0.44 10.5 0.0 3.1 3 0 0 3 3 3 1 Helix-hairpin-helix motif HHH_2 PF12826.2 gi|89256283|ref|YP_513645.1| - 0.0021 17.9 0.1 2.9 7.8 0.0 3.0 2 1 1 3 3 3 2 Helix-hairpin-helix motif 5_3_exonuc PF01367.15 gi|89256283|ref|YP_513645.1| - 0.0026 17.9 0.3 0.25 11.6 0.1 2.5 2 0 0 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold IMS_HHH PF11798.3 gi|89256283|ref|YP_513645.1| - 0.0067 16.4 0.7 0.13 12.3 0.0 2.8 3 0 0 3 3 3 1 IMS family HHH motif HHH_8 PF14716.1 gi|89256283|ref|YP_513645.1| - 0.014 15.6 0.2 0.59 10.3 0.0 2.7 1 1 1 2 2 2 0 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.4 gi|89256283|ref|YP_513645.1| - 0.018 14.5 0.0 2.3 7.8 0.0 2.6 1 1 1 2 2 2 0 Fingers domain of DNA polymerase lambda Ribosomal_S13 PF00416.17 gi|89256283|ref|YP_513645.1| - 0.062 13.7 0.3 0.6 10.5 0.2 2.4 1 1 0 1 1 1 0 Ribosomal protein S13/S18 AAA_11 PF13086.1 gi|89256283|ref|YP_513645.1| - 0.065 12.7 0.1 0.085 12.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain HHH_4 PF14490.1 gi|89256283|ref|YP_513645.1| - 0.092 12.5 0.5 2.5 7.9 0.0 2.8 3 0 0 3 3 3 0 Helix-hairpin-helix containing domain MutS_I PF01624.15 gi|89256283|ref|YP_513645.1| - 0.095 12.7 0.2 0.2 11.6 0.2 1.5 1 0 0 1 1 1 0 MutS domain I RmuC PF02646.11 gi|89256284|ref|YP_513646.1| - 9.8e-93 310.3 6.8 9.8e-93 310.3 4.7 2.6 2 1 0 3 3 3 2 RmuC family IncA PF04156.9 gi|89256284|ref|YP_513646.1| - 0.019 14.5 37.0 0.96 9.0 20.4 3.5 3 1 0 3 3 3 0 IncA protein Chordopox_A13L PF05961.6 gi|89256284|ref|YP_513646.1| - 0.027 14.3 1.5 0.096 12.6 0.2 2.7 2 0 0 2 2 2 0 Chordopoxvirus A13L protein DUF4279 PF14106.1 gi|89256284|ref|YP_513646.1| - 0.041 13.7 2.0 0.3 10.9 0.0 3.2 3 1 1 4 4 4 0 Domain of unknown function (DUF4279) Coa1 PF08695.5 gi|89256284|ref|YP_513646.1| - 0.075 12.5 0.0 0.16 11.5 0.0 1.5 1 0 0 1 1 1 0 Cytochrome oxidase complex assembly protein 1 WXG100 PF06013.7 gi|89256284|ref|YP_513646.1| - 0.084 12.8 13.2 0.81 9.7 0.3 4.7 5 0 0 5 5 5 0 Proteins of 100 residues with WXG Rootletin PF15035.1 gi|89256284|ref|YP_513646.1| - 0.32 10.9 32.0 2.2 8.2 20.7 3.1 1 1 1 2 2 2 0 Ciliary rootlet component, centrosome cohesion DUF3391 PF11871.3 gi|89256284|ref|YP_513646.1| - 2.1 8.5 9.0 4 7.6 0.0 3.5 2 1 0 2 2 2 0 Domain of unknown function (DUF3391) UPF0118 PF01594.11 gi|89256284|ref|YP_513646.1| - 2.1 7.2 17.7 0.09 11.7 1.2 3.7 4 1 1 5 5 5 0 Domain of unknown function DUF20 Baculo_PEP_C PF04513.7 gi|89256284|ref|YP_513646.1| - 9.1 6.1 25.6 1.2 8.9 2.5 4.2 3 1 1 5 5 5 0 Baculovirus polyhedron envelope protein, PEP, C terminus Cytochrom_B_N PF00033.14 gi|89256285|ref|YP_513647.1| - 9.4e-10 38.1 2.4 1.1e-09 37.9 1.7 1.0 1 0 0 1 1 1 1 Cytochrome b(N-terminal)/b6/petB Ni_hydr_CYTB PF01292.15 gi|89256285|ref|YP_513647.1| - 5.6e-08 32.3 2.6 6.1e-08 32.2 1.8 1.0 1 0 0 1 1 1 1 Prokaryotic cytochrome b561 FA_desaturase PF00487.19 gi|89256285|ref|YP_513647.1| - 0.17 11.2 2.3 0.21 11.0 1.6 1.3 1 0 0 1 1 1 0 Fatty acid desaturase Ferric_reduct PF01794.14 gi|89256285|ref|YP_513647.1| - 1.6 8.8 6.6 1.3 9.1 1.1 2.2 1 1 0 2 2 2 0 Ferric reductase like transmembrane component DUF308 PF03729.8 gi|89256285|ref|YP_513647.1| - 1.7 8.6 13.2 1.8 8.5 0.1 3.1 3 0 0 3 3 3 0 Short repeat of unknown function (DUF308) HTH_24 PF13412.1 gi|89256286|ref|YP_513648.1| - 6.7e-06 25.4 0.0 9.8e-06 24.8 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|89256286|ref|YP_513648.1| - 0.0027 17.3 0.0 0.004 16.7 0.0 1.3 1 0 0 1 1 1 1 HTH domain MarR PF01047.17 gi|89256286|ref|YP_513648.1| - 0.052 13.2 0.1 0.11 12.2 0.0 1.6 1 1 0 1 1 1 0 MarR family Rrf2 PF02082.15 gi|89256286|ref|YP_513648.1| - 0.12 12.4 0.0 0.15 12.1 0.0 1.1 1 0 0 1 1 1 0 Transcriptional regulator Amidohydro_2 PF04909.9 gi|89256288|ref|YP_513650.1| - 1e-10 41.6 0.0 1.6e-10 40.9 0.0 1.3 1 1 0 1 1 1 1 Amidohydrolase Pyridoxal_deC PF00282.14 gi|89256289|ref|YP_513651.1| - 5.4e-18 64.5 0.0 8.4e-18 63.9 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Bro-N PF02498.12 gi|89256289|ref|YP_513651.1| - 0.22 11.8 1.4 2 8.7 0.2 2.8 3 0 0 3 3 3 0 BRO family, N-terminal domain Aldolase_II PF00596.16 gi|89256290|ref|YP_513652.1| - 4.9e-38 130.5 0.8 6.3e-38 130.2 0.5 1.1 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain Pur_DNA_glyco PF02245.11 gi|89256291|ref|YP_513653.1| - 1e-63 213.7 0.0 1.2e-63 213.5 0.0 1.0 1 0 0 1 1 1 1 Methylpurine-DNA glycosylase (MPG) RrnaAD PF00398.15 gi|89256291|ref|YP_513653.1| - 0.11 11.4 0.0 0.17 10.8 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Isochorismatase PF00857.15 gi|89256292|ref|YP_513654.1| - 2e-19 70.1 0.0 2.4e-19 69.9 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family NMN_transporter PF04973.7 gi|89256293|ref|YP_513655.1| - 2.2e-50 170.6 23.1 2.6e-50 170.4 16.0 1.0 1 0 0 1 1 1 1 Nicotinamide mononucleotide transporter Na_H_Exchanger PF00999.16 gi|89256294|ref|YP_513656.1| - 1.9e-63 214.2 50.1 2.6e-63 213.8 34.7 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family MS_channel PF00924.13 gi|89256295|ref|YP_513657.1| - 1.1e-12 47.7 4.9 1.1e-12 47.7 3.4 1.6 2 0 0 2 2 2 1 Mechanosensitive ion channel DUF2909 PF11137.3 gi|89256295|ref|YP_513657.1| - 9.1e-05 22.1 6.6 9.1e-05 22.1 4.6 1.8 1 1 0 1 1 1 1 Protein of unknown function (DUF2909) DUF2231 PF09990.4 gi|89256295|ref|YP_513657.1| - 0.015 15.6 1.2 0.015 15.6 0.9 2.1 1 1 1 2 2 2 0 Predicted membrane protein (DUF2231) QueT PF06177.6 gi|89256295|ref|YP_513657.1| - 0.59 10.1 13.1 0.84 9.5 9.1 1.1 1 0 0 1 1 1 0 QueT transporter PRA1 PF03208.14 gi|89256295|ref|YP_513657.1| - 0.79 9.0 7.9 1.3 8.3 5.5 1.3 1 0 0 1 1 1 0 PRA1 family protein TctA PF01970.11 gi|89256295|ref|YP_513657.1| - 3.2 6.0 11.4 4 5.7 7.9 1.1 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter TctA family MFS_1 PF07690.11 gi|89256296|ref|YP_513658.1| - 8.2e-29 100.4 33.1 1.2e-28 99.9 22.9 1.1 1 0 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|89256296|ref|YP_513658.1| - 6.7e-06 24.9 26.8 0.00076 18.1 4.6 2.3 2 0 0 2 2 2 2 Sugar (and other) transporter AstE_AspA PF04952.9 gi|89256297|ref|YP_513659.1| - 2.8e-31 108.4 0.0 3.2e-31 108.3 0.0 1.0 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Pribosyltran_N PF13793.1 gi|89256298|ref|YP_513660.1| - 2.4e-47 159.4 0.1 1.2e-45 154.0 0.0 2.5 3 0 0 3 3 3 1 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyl_synth PF14572.1 gi|89256298|ref|YP_513660.1| - 2.9e-25 89.0 2.2 5.6e-24 84.9 0.3 2.3 1 1 1 2 2 2 1 Phosphoribosyl synthetase-associated domain Pribosyltran PF00156.22 gi|89256298|ref|YP_513660.1| - 4.8e-16 58.6 1.7 3e-15 56.0 0.2 2.6 2 1 0 2 2 2 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|89256298|ref|YP_513660.1| - 0.0017 17.5 0.1 0.0033 16.6 0.1 1.4 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase EIIA-man PF03610.11 gi|89256298|ref|YP_513660.1| - 0.081 12.9 0.4 0.2 11.7 0.1 1.8 2 0 0 2 2 2 0 PTS system fructose IIA component PRTase_2 PF15609.1 gi|89256298|ref|YP_513660.1| - 0.12 11.6 0.0 0.26 10.5 0.0 1.5 1 0 0 1 1 1 0 Phosphoribosyl transferase Ribosomal_L25p PF01386.14 gi|89256299|ref|YP_513661.1| - 1.8e-31 108.0 0.1 2e-31 107.9 0.1 1.0 1 0 0 1 1 1 1 Ribosomal L25p family DUF21 PF01595.15 gi|89256300|ref|YP_513662.1| - 1.3e-55 187.5 7.7 2.2e-55 186.7 5.3 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF21 CorC_HlyC PF03471.12 gi|89256300|ref|YP_513662.1| - 8.4e-17 60.7 0.1 2.5e-16 59.2 0.0 1.9 2 0 0 2 2 2 1 Transporter associated domain CBS PF00571.23 gi|89256300|ref|YP_513662.1| - 7.4e-09 35.2 0.1 6.6e-05 22.6 0.0 2.7 2 0 0 2 2 2 2 CBS domain MFS_1 PF07690.11 gi|89256300|ref|YP_513662.1| - 0.0091 14.7 8.9 0.012 14.3 6.2 1.1 1 0 0 1 1 1 1 Major Facilitator Superfamily DUF4538 PF15061.1 gi|89256300|ref|YP_513662.1| - 0.17 11.2 0.8 0.69 9.2 0.0 2.4 2 1 1 3 3 3 0 Domain of unknown function (DUF4538) Psb28 PF03912.9 gi|89256301|ref|YP_513663.1| - 0.043 13.7 0.1 0.043 13.7 0.1 1.0 1 0 0 1 1 1 0 Psb28 protein Methyltransf_11 PF08241.7 gi|89256302|ref|YP_513664.1| - 1.9e-17 63.5 0.0 3.1e-17 62.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|89256302|ref|YP_513664.1| - 1e-16 60.8 0.2 1.6e-16 60.2 0.1 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|89256302|ref|YP_513664.1| - 5.5e-11 43.0 0.0 1.5e-10 41.6 0.0 1.6 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|89256302|ref|YP_513664.1| - 4.4e-10 39.8 0.0 6.9e-10 39.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|89256302|ref|YP_513664.1| - 3.6e-09 36.0 0.1 3.8e-09 35.9 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.9 gi|89256302|ref|YP_513664.1| - 7.5e-08 31.9 0.0 1e-07 31.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|89256302|ref|YP_513664.1| - 1.1e-07 31.9 0.0 1.7e-07 31.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|89256302|ref|YP_513664.1| - 2.9e-07 30.8 0.2 5.2e-07 30.0 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|89256302|ref|YP_513664.1| - 7.2e-07 29.0 0.0 8.5e-07 28.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.9 gi|89256302|ref|YP_513664.1| - 7.8e-05 21.9 0.2 0.0001 21.5 0.1 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_32 PF13679.1 gi|89256302|ref|YP_513664.1| - 0.00018 21.2 0.0 0.00024 20.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|89256302|ref|YP_513664.1| - 0.00085 18.7 0.0 0.0012 18.3 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW DREV PF05219.7 gi|89256302|ref|YP_513664.1| - 0.00089 18.2 0.0 0.001 17.9 0.0 1.1 1 0 0 1 1 1 1 DREV methyltransferase Methyltransf_8 PF05148.10 gi|89256302|ref|YP_513664.1| - 0.001 18.7 0.0 0.011 15.4 0.0 2.0 1 1 0 1 1 1 1 Hypothetical methyltransferase RrnaAD PF00398.15 gi|89256302|ref|YP_513664.1| - 0.0013 17.7 0.0 0.0016 17.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase GidB PF02527.10 gi|89256302|ref|YP_513664.1| - 0.0029 16.7 0.0 0.0045 16.1 0.0 1.3 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G NodS PF05401.6 gi|89256302|ref|YP_513664.1| - 0.0062 15.9 0.0 0.0065 15.8 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) AdoMet_MTase PF07757.8 gi|89256302|ref|YP_513664.1| - 0.01 15.9 0.0 0.015 15.3 0.0 1.5 1 0 0 1 1 1 0 Predicted AdoMet-dependent methyltransferase HlyE PF06109.8 gi|89256302|ref|YP_513664.1| - 0.024 13.6 0.2 0.028 13.4 0.1 1.2 1 0 0 1 1 1 0 Haemolysin E (HlyE) Methyltransf_4 PF02390.12 gi|89256302|ref|YP_513664.1| - 0.066 12.2 0.1 0.094 11.7 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase DUF2492 PF10678.4 gi|89256302|ref|YP_513664.1| - 0.13 12.3 0.1 0.46 10.5 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2492) YchF-GTPase_C PF06071.8 gi|89256304|ref|YP_513666.1| - 6.8e-41 137.9 0.2 1.4e-40 136.9 0.1 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF933) MMR_HSR1 PF01926.18 gi|89256304|ref|YP_513666.1| - 6.8e-20 71.1 0.0 1.1e-19 70.4 0.0 1.5 1 1 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|89256304|ref|YP_513666.1| - 6.4e-08 32.0 0.1 2e-07 30.4 0.0 1.9 3 0 0 3 3 3 1 Ferrous iron transport protein B AAA_17 PF13207.1 gi|89256304|ref|YP_513666.1| - 0.016 15.9 0.1 0.049 14.4 0.1 2.2 1 1 0 1 1 1 0 AAA domain Acetyltransf_CG PF14542.1 gi|89256304|ref|YP_513666.1| - 0.027 14.3 0.1 0.11 12.3 0.0 2.0 2 0 0 2 2 2 0 GCN5-related N-acetyl-transferase TGS PF02824.16 gi|89256304|ref|YP_513666.1| - 0.054 13.3 0.3 0.24 11.2 0.2 2.1 1 1 0 1 1 1 0 TGS domain ArgK PF03308.11 gi|89256304|ref|YP_513666.1| - 0.093 11.4 0.0 0.31 9.7 0.0 1.8 2 0 0 2 2 2 0 ArgK protein Pox_D5 PF03288.11 gi|89256304|ref|YP_513666.1| - 0.14 12.4 2.0 0.18 12.1 0.4 2.0 2 1 0 2 2 2 0 Poxvirus D5 protein-like Pept_tRNA_hydro PF01195.14 gi|89256305|ref|YP_513667.1| - 1e-67 227.2 0.9 1.2e-67 227.0 0.6 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase Beta-lactamase2 PF13354.1 gi|89256306|ref|YP_513668.1| - 5.7e-43 146.6 0.2 7.4e-43 146.2 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase enzyme family Beta-lactamase PF00144.19 gi|89256306|ref|YP_513668.1| - 9.3e-09 34.7 0.0 0.00064 18.8 0.0 2.1 1 1 1 2 2 2 2 Beta-lactamase Thioredoxin_2 PF13098.1 gi|89256307|ref|YP_513669.1| - 0.0011 19.2 0.0 0.0029 17.7 0.0 1.7 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_4 PF13462.1 gi|89256307|ref|YP_513669.1| - 0.089 12.7 0.4 0.48 10.4 0.1 2.3 2 1 0 2 2 2 0 Thioredoxin DiS_P_DiS PF06750.8 gi|89256308|ref|YP_513670.1| - 5.8e-32 109.3 0.3 1.3e-31 108.2 0.2 1.6 1 0 0 1 1 1 1 Bacterial Peptidase A24 N-terminal domain Peptidase_A24 PF01478.13 gi|89256308|ref|YP_513670.1| - 1.5e-24 86.1 11.6 1.5e-24 86.1 8.0 2.3 3 0 0 3 3 3 1 Type IV leader peptidase family Pyr_redox_2 PF07992.9 gi|89256309|ref|YP_513671.1| - 2.9e-30 105.6 0.2 3.8e-30 105.2 0.1 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|89256309|ref|YP_513671.1| - 1.9e-28 98.6 0.0 4.2e-28 97.5 0.0 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.22 gi|89256309|ref|YP_513671.1| - 1.4e-15 57.4 1.2 2.5e-13 50.2 0.1 2.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|89256309|ref|YP_513671.1| - 2.1e-08 34.4 0.1 0.00018 21.6 0.0 2.4 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|89256309|ref|YP_513671.1| - 6.3e-07 28.8 0.5 1.6e-06 27.4 0.3 1.6 2 0 0 2 2 2 1 FAD dependent oxidoreductase Thi4 PF01946.12 gi|89256309|ref|YP_513671.1| - 1.9e-06 27.1 1.2 0.0001 21.5 0.1 2.7 3 0 0 3 3 3 1 Thi4 family K_oxygenase PF13434.1 gi|89256309|ref|YP_513671.1| - 2.4e-06 26.7 0.0 1e-05 24.6 0.0 1.9 2 1 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) GIDA PF01134.17 gi|89256309|ref|YP_513671.1| - 2.7e-05 23.1 2.3 0.0075 15.1 0.1 3.8 4 1 0 4 4 4 1 Glucose inhibited division protein A FAD_binding_2 PF00890.19 gi|89256309|ref|YP_513671.1| - 5.2e-05 22.2 0.1 0.00025 20.0 0.0 2.0 2 0 0 2 2 2 1 FAD binding domain DAO PF01266.19 gi|89256309|ref|YP_513671.1| - 0.00013 21.0 1.6 0.00065 18.7 0.0 2.5 3 1 0 3 3 2 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|89256309|ref|YP_513671.1| - 0.00024 19.7 2.4 0.0091 14.5 0.9 2.5 2 0 0 2 2 2 1 HI0933-like protein 3HCDH_N PF02737.13 gi|89256309|ref|YP_513671.1| - 0.0012 18.5 0.5 0.12 12.0 0.0 2.5 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_9 PF13454.1 gi|89256309|ref|YP_513671.1| - 0.0017 18.1 0.0 0.14 11.9 0.0 2.6 2 1 0 2 2 2 1 FAD-NAD(P)-binding Lycopene_cycl PF05834.7 gi|89256309|ref|YP_513671.1| - 0.0019 17.2 0.0 1.4 7.7 0.0 2.8 2 1 1 3 3 3 2 Lycopene cyclase protein NAD_binding_8 PF13450.1 gi|89256309|ref|YP_513671.1| - 0.016 15.1 0.9 0.055 13.4 0.2 2.1 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain NAD_Gly3P_dh_N PF01210.18 gi|89256309|ref|YP_513671.1| - 0.12 12.1 0.1 14 5.3 0.0 2.4 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Ion_trans_2 PF07885.11 gi|89256310|ref|YP_513672.1| - 1.7e-14 53.3 7.6 1.7e-14 53.3 5.3 1.8 1 1 1 2 2 2 1 Ion channel Ion_trans PF00520.26 gi|89256310|ref|YP_513672.1| - 0.00059 19.1 8.7 0.0013 17.9 6.0 1.7 1 1 0 1 1 1 1 Ion transport protein Bax1-I PF01027.15 gi|89256310|ref|YP_513672.1| - 0.037 13.6 7.0 0.11 12.0 4.8 1.6 1 1 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 DUF2178 PF09946.4 gi|89256310|ref|YP_513672.1| - 0.045 13.4 0.2 0.045 13.4 0.1 2.8 3 1 0 3 3 3 0 Predicted membrane protein (DUF2178) SHP PF03579.8 gi|89256310|ref|YP_513672.1| - 0.045 13.1 0.6 0.045 13.1 0.4 2.7 3 0 0 3 3 3 0 Small hydrophobic protein 7TM-7TMR_HD PF07698.6 gi|89256310|ref|YP_513672.1| - 0.31 10.4 6.2 0.34 10.3 1.9 2.1 2 0 0 2 2 2 0 7TM receptor with intracellular HD hydrolase Endonuc_subdom PF09062.5 gi|89256310|ref|YP_513672.1| - 0.49 11.1 6.6 0.15 12.8 0.7 2.3 2 0 0 2 2 2 0 PI-PfuI Endonuclease subdomain DUF3816 PF12822.2 gi|89256310|ref|YP_513672.1| - 0.97 9.3 12.7 2 8.2 8.8 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3816) zf-DHHC PF01529.15 gi|89256310|ref|YP_513672.1| - 5.3 6.4 11.7 12 5.2 8.1 1.9 1 1 0 1 1 1 0 DHHC palmitoyltransferase SpoIIIAC PF06686.6 gi|89256311|ref|YP_513673.1| - 4.9 7.0 8.8 0.18 11.5 2.0 1.7 2 0 0 2 2 2 0 Stage III sporulation protein AC/AD protein family MFS_1 PF07690.11 gi|89256312|ref|YP_513674.1| - 1.5e-19 69.9 61.7 3.1e-15 55.7 27.4 2.8 1 1 1 2 2 2 2 Major Facilitator Superfamily PTR2 PF00854.16 gi|89256312|ref|YP_513674.1| - 6.6e-15 54.7 32.1 6.6e-15 54.7 22.2 1.9 2 1 0 2 2 2 1 POT family NICE-3 PF07406.6 gi|89256312|ref|YP_513674.1| - 3.1 7.2 6.3 0.21 11.0 0.4 1.9 2 0 0 2 2 2 0 NICE-3 protein AAA_2 PF07724.9 gi|89256313|ref|YP_513675.1| - 9.7e-52 175.3 2.6 3.3e-43 147.5 0.3 2.6 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA PF00004.24 gi|89256313|ref|YP_513675.1| - 1.3e-15 57.7 2.8 7.6e-07 29.3 0.1 3.1 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|89256313|ref|YP_513675.1| - 1.8e-07 31.3 0.1 6.1e-05 23.1 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|89256313|ref|YP_513675.1| - 6.4e-07 29.1 0.0 7.3e-05 22.5 0.0 2.7 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.1 gi|89256313|ref|YP_513675.1| - 3.5e-06 27.1 0.0 1.2e-05 25.4 0.0 1.9 1 1 0 1 1 1 1 AAA ATPase domain ClpB_D2-small PF10431.4 gi|89256313|ref|YP_513675.1| - 4.5e-06 26.4 0.4 4.5e-06 26.4 0.3 2.6 2 0 0 2 2 2 1 C-terminal, D2-small domain, of ClpB protein MCM PF00493.18 gi|89256313|ref|YP_513675.1| - 1e-05 24.5 2.7 0.00017 20.5 0.0 3.3 3 1 0 3 3 3 1 MCM2/3/5 family Mg_chelatase PF01078.16 gi|89256313|ref|YP_513675.1| - 2.2e-05 23.7 0.3 0.0046 16.1 0.0 3.4 3 1 1 4 4 4 1 Magnesium chelatase, subunit ChlI AAA_17 PF13207.1 gi|89256313|ref|YP_513675.1| - 2.8e-05 24.9 3.4 3.6e-05 24.5 0.8 2.6 2 1 0 2 2 2 1 AAA domain Zeta_toxin PF06414.7 gi|89256313|ref|YP_513675.1| - 0.00034 19.7 0.2 0.00092 18.3 0.0 1.8 2 0 0 2 2 2 1 Zeta toxin AAA_14 PF13173.1 gi|89256313|ref|YP_513675.1| - 0.00039 20.3 0.2 0.99 9.3 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.1 gi|89256313|ref|YP_513675.1| - 0.0004 20.6 0.0 0.0004 20.6 0.0 2.6 3 0 0 3 3 3 1 AAA domain Sigma54_activat PF00158.21 gi|89256313|ref|YP_513675.1| - 0.00041 19.8 0.0 0.017 14.5 0.0 2.5 2 0 0 2 2 2 1 Sigma-54 interaction domain G-alpha PF00503.15 gi|89256313|ref|YP_513675.1| - 0.00054 18.7 1.1 0.00084 18.1 0.7 1.2 1 0 0 1 1 1 1 G-protein alpha subunit RuvB_N PF05496.7 gi|89256313|ref|YP_513675.1| - 0.0008 18.5 0.4 0.045 12.7 0.1 2.5 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus IstB_IS21 PF01695.12 gi|89256313|ref|YP_513675.1| - 0.0041 16.5 0.0 0.017 14.5 0.0 2.0 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_33 PF13671.1 gi|89256313|ref|YP_513675.1| - 0.0053 16.6 0.0 0.013 15.3 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|89256313|ref|YP_513675.1| - 0.019 14.3 0.3 0.71 9.2 0.2 2.5 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.1 gi|89256313|ref|YP_513675.1| - 0.026 14.4 0.6 0.15 11.9 0.0 2.4 2 0 0 2 2 2 0 AAA domain DEAD PF00270.24 gi|89256313|ref|YP_513675.1| - 0.06 12.8 0.1 0.45 9.9 0.0 2.1 2 0 0 2 2 2 0 DEAD/DEAH box helicase NACHT PF05729.7 gi|89256313|ref|YP_513675.1| - 0.062 12.9 0.1 2.4 7.8 0.0 2.4 2 0 0 2 2 2 0 NACHT domain ResIII PF04851.10 gi|89256313|ref|YP_513675.1| - 0.07 12.9 3.8 0.3 10.9 0.7 2.8 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit DUF258 PF03193.11 gi|89256313|ref|YP_513675.1| - 0.074 12.2 0.0 0.15 11.2 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function, DUF258 ABC_tran PF00005.22 gi|89256313|ref|YP_513675.1| - 0.089 13.0 0.2 0.4 10.9 0.2 2.1 1 1 0 1 1 1 0 ABC transporter MobB PF03205.9 gi|89256313|ref|YP_513675.1| - 0.13 11.9 1.6 0.25 11.0 0.0 2.3 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Proteasome PF00227.21 gi|89256314|ref|YP_513676.1| - 2.5e-25 88.8 1.1 3.6e-25 88.3 0.7 1.2 1 0 0 1 1 1 1 Proteasome subunit BPL_LplA_LipB PF03099.14 gi|89256316|ref|YP_513678.1| - 8.6e-22 77.4 0.1 2e-21 76.2 0.0 1.7 2 0 0 2 2 2 1 Biotin/lipoate A/B protein ligase family tRNA-synt_1b PF00579.20 gi|89256317|ref|YP_513679.1| - 2.1e-74 250.2 0.3 3.4e-74 249.6 0.2 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) S4 PF01479.20 gi|89256317|ref|YP_513679.1| - 1.4e-07 30.8 0.0 2.9e-07 29.8 0.0 1.5 1 0 0 1 1 1 1 S4 domain S4_2 PF13275.1 gi|89256317|ref|YP_513679.1| - 3.3e-05 23.4 0.3 0.00013 21.5 0.1 2.1 2 0 0 2 2 2 1 S4 domain DDE_3 PF13358.1 gi|89256318|ref|YP_513680.1| - 1.7e-31 108.9 0.0 2.8e-31 108.2 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.11 gi|89256318|ref|YP_513680.1| - 1.5e-07 31.0 0.2 1.1e-06 28.3 0.1 2.1 2 0 0 2 2 2 1 Transposase DDE_1 PF03184.14 gi|89256318|ref|YP_513680.1| - 5.8e-07 28.8 0.1 9.5e-07 28.1 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_28 PF13518.1 gi|89256318|ref|YP_513680.1| - 0.00058 19.8 0.0 0.0018 18.2 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain rve PF00665.21 gi|89256318|ref|YP_513680.1| - 0.00072 19.6 0.0 0.0013 18.7 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.1 gi|89256318|ref|YP_513680.1| - 0.0087 15.6 0.0 0.029 14.0 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.1 gi|89256318|ref|YP_513680.1| - 0.02 15.0 0.0 0.032 14.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix DDE_Tnp_ISAZ013 PF07592.6 gi|89256318|ref|YP_513680.1| - 0.039 12.6 0.6 0.32 9.7 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain FMN_dh PF01070.13 gi|89256319|ref|YP_513681.1| - 3.2e-127 424.2 0.0 3.8e-127 424.0 0.0 1.0 1 0 0 1 1 1 1 FMN-dependent dehydrogenase IMPDH PF00478.20 gi|89256319|ref|YP_513681.1| - 6.1e-06 25.3 0.2 1.4e-05 24.1 0.1 1.7 1 1 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain Glu_synthase PF01645.12 gi|89256319|ref|YP_513681.1| - 0.00026 20.0 0.1 0.00047 19.1 0.0 1.4 1 0 0 1 1 1 1 Conserved region in glutamate synthase NMO PF03060.10 gi|89256319|ref|YP_513681.1| - 0.0034 16.6 0.2 0.0047 16.1 0.1 1.2 1 0 0 1 1 1 1 Nitronate monooxygenase IGPS PF00218.16 gi|89256319|ref|YP_513681.1| - 0.023 13.7 0.0 0.05 12.6 0.0 1.5 1 0 0 1 1 1 0 Indole-3-glycerol phosphate synthase His_biosynth PF00977.16 gi|89256319|ref|YP_513681.1| - 0.03 13.5 0.1 0.068 12.4 0.0 1.6 1 0 0 1 1 1 0 Histidine biosynthesis protein ThiG PF05690.9 gi|89256319|ref|YP_513681.1| - 0.04 12.9 0.4 0.098 11.7 0.0 1.7 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG FAD-oxidase_C PF02913.14 gi|89256320|ref|YP_513682.1| - 1.1e-28 100.2 0.1 1.6e-28 99.7 0.0 1.1 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.18 gi|89256320|ref|YP_513682.1| - 1.5e-27 95.7 0.0 2.3e-27 95.1 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain Chordopox_L2 PF05803.7 gi|89256320|ref|YP_513682.1| - 0.011 15.3 0.1 0.023 14.3 0.1 1.5 1 0 0 1 1 1 0 Chordopoxvirus L2 protein Tox-REase-2 PF15646.1 gi|89256320|ref|YP_513682.1| - 0.013 15.3 1.2 1.2 8.9 0.1 3.2 3 0 0 3 3 3 0 Restriction endonuclease fold toxin 2 PrmA PF06325.8 gi|89256321|ref|YP_513683.1| - 1.7e-72 244.0 0.5 3.1e-72 243.1 0.4 1.4 1 1 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_31 PF13847.1 gi|89256321|ref|YP_513683.1| - 1.2e-13 50.9 0.5 4.5e-13 49.0 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|89256321|ref|YP_513683.1| - 1.5e-11 44.2 0.0 3.6e-11 43.0 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|89256321|ref|YP_513683.1| - 8e-11 41.6 0.6 1.7e-10 40.5 0.1 1.8 2 1 0 2 2 2 1 Methyltransferase small domain Methyltransf_18 PF12847.2 gi|89256321|ref|YP_513683.1| - 9.1e-10 39.1 0.1 3.6e-09 37.1 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|89256321|ref|YP_513683.1| - 1.2e-08 35.2 1.9 7.2e-08 32.8 0.0 2.7 3 0 0 3 3 3 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|89256321|ref|YP_513683.1| - 2.1e-07 30.9 0.0 3.9e-07 30.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|89256321|ref|YP_513683.1| - 1.1e-06 28.9 0.0 1.4e-05 25.5 0.0 2.5 2 0 0 2 2 2 1 Methyltransferase domain UPF0020 PF01170.13 gi|89256321|ref|YP_513683.1| - 1.1e-05 25.1 0.0 2.3e-05 24.0 0.0 1.5 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_25 PF13649.1 gi|89256321|ref|YP_513683.1| - 0.0015 18.8 0.1 0.0071 16.6 0.0 2.2 2 1 0 2 2 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|89256321|ref|YP_513683.1| - 0.0028 17.0 0.0 0.0067 15.8 0.0 1.6 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Met_10 PF02475.11 gi|89256321|ref|YP_513683.1| - 0.0028 17.2 0.2 0.0076 15.8 0.0 1.7 2 0 0 2 2 2 1 Met-10+ like-protein PCMT PF01135.14 gi|89256321|ref|YP_513683.1| - 0.0031 17.0 0.1 0.01 15.3 0.1 1.8 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_32 PF13679.1 gi|89256321|ref|YP_513683.1| - 0.0046 16.6 0.1 0.0099 15.5 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain MetW PF07021.7 gi|89256321|ref|YP_513683.1| - 0.01 15.2 0.0 0.018 14.4 0.0 1.4 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW CMAS PF02353.15 gi|89256321|ref|YP_513683.1| - 0.017 14.2 0.1 0.048 12.7 0.1 1.8 1 1 0 1 1 1 0 Mycolic acid cyclopropane synthetase FmrO PF07091.6 gi|89256321|ref|YP_513683.1| - 0.019 13.9 0.0 0.034 13.1 0.0 1.3 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) Methyltransf_9 PF08003.6 gi|89256321|ref|YP_513683.1| - 0.028 13.1 0.0 0.19 10.4 0.0 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF1698) N6_N4_Mtase PF01555.13 gi|89256321|ref|YP_513683.1| - 0.042 13.3 0.1 0.059 12.8 0.0 1.3 1 0 0 1 1 1 0 DNA methylase Methyltransf_15 PF09445.5 gi|89256321|ref|YP_513683.1| - 0.064 12.8 0.5 0.16 11.5 0.0 1.8 2 0 0 2 2 2 0 RNA cap guanine-N2 methyltransferase Dus PF01207.12 gi|89256322|ref|YP_513684.1| - 6.8e-93 310.8 0.5 8.2e-93 310.6 0.4 1.0 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) DHO_dh PF01180.16 gi|89256322|ref|YP_513684.1| - 3.8e-05 22.7 0.2 0.00061 18.8 0.2 2.1 1 1 0 1 1 1 1 Dihydroorotate dehydrogenase NanE PF04131.9 gi|89256322|ref|YP_513684.1| - 0.00019 20.4 0.8 0.00037 19.5 0.3 1.7 1 1 1 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase His_biosynth PF00977.16 gi|89256322|ref|YP_513684.1| - 0.00042 19.6 0.7 0.00088 18.6 0.5 1.5 1 0 0 1 1 1 1 Histidine biosynthesis protein PEP_mutase PF13714.1 gi|89256322|ref|YP_513684.1| - 0.0008 18.6 0.8 0.0019 17.4 0.5 1.6 1 1 0 1 1 1 1 Phosphoenolpyruvate phosphomutase Oxidored_FMN PF00724.15 gi|89256322|ref|YP_513684.1| - 0.033 13.1 0.6 0.29 10.0 0.3 2.4 2 1 0 2 2 2 0 NADH:flavin oxidoreductase / NADH oxidase family N6_Mtase PF02384.11 gi|89256323|ref|YP_513685.1| - 2.2e-37 128.8 7.0 2e-25 89.5 0.1 4.5 2 2 0 3 3 3 2 N-6 DNA Methylase Methyltransf_26 PF13659.1 gi|89256323|ref|YP_513685.1| - 2.8e-15 56.3 0.0 5.1e-15 55.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methylase_S PF01420.14 gi|89256323|ref|YP_513685.1| - 6.4e-15 55.5 6.8 6.4e-15 55.5 4.7 2.3 2 0 0 2 2 2 1 Type I restriction modification DNA specificity domain UPF0020 PF01170.13 gi|89256323|ref|YP_513685.1| - 1.7e-10 40.7 0.0 3.7e-10 39.6 0.0 1.5 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 HSDR_N_2 PF13588.1 gi|89256323|ref|YP_513685.1| - 3.4e-10 39.7 0.5 1.1e-09 38.1 0.0 2.2 2 0 0 2 2 2 1 Type I restriction enzyme R protein N terminus (HSDR_N) MTS PF05175.9 gi|89256323|ref|YP_513685.1| - 0.0013 18.1 0.0 0.011 15.1 0.0 2.5 2 1 0 2 2 2 1 Methyltransferase small domain Eco57I PF07669.6 gi|89256323|ref|YP_513685.1| - 0.0092 16.3 0.0 0.64 10.3 0.0 2.9 1 1 0 1 1 1 1 Eco57I restriction-modification methylase GCFC PF07842.7 gi|89256323|ref|YP_513685.1| - 0.019 14.3 0.1 0.042 13.1 0.1 1.5 1 0 0 1 1 1 0 GC-rich sequence DNA-binding factor-like protein Complex1_LYR_2 PF13233.1 gi|89256323|ref|YP_513685.1| - 0.044 14.2 2.7 7.2 7.1 0.0 3.1 2 1 0 2 2 2 0 Complex1_LYR-like DUF559 PF04480.7 gi|89256324|ref|YP_513686.1| - 1.7e-28 98.4 0.2 2e-28 98.2 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF559) SMC_N PF02463.14 gi|89256325|ref|YP_513687.1| - 1.3e-08 34.3 1.3 1.9e-08 33.8 0.9 1.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|89256325|ref|YP_513687.1| - 7.1e-07 29.4 5.0 1.1e-06 28.8 3.5 1.3 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|89256325|ref|YP_513687.1| - 3.4e-05 23.0 8.8 4e-05 22.8 6.1 1.1 1 0 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.1 gi|89256325|ref|YP_513687.1| - 8.8e-05 22.9 5.3 0.00011 22.6 3.7 1.1 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|89256325|ref|YP_513687.1| - 0.0046 16.4 0.0 0.0074 15.8 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain Hat1_N PF10394.4 gi|89256325|ref|YP_513687.1| - 0.015 15.3 1.3 0.018 15.0 0.9 1.1 1 0 0 1 1 1 0 Histone acetyl transferase HAT1 N-terminus DUF2813 PF11398.3 gi|89256325|ref|YP_513687.1| - 0.048 12.7 0.1 0.048 12.7 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2813) Nab2 PF11517.3 gi|89256325|ref|YP_513687.1| - 0.069 13.2 0.0 0.073 13.1 0.0 1.1 1 0 0 1 1 1 0 Nuclear abundant poly(A) RNA-bind protein 2 (Nab2) SLIDE PF09111.5 gi|89256325|ref|YP_513687.1| - 0.076 12.7 0.2 0.11 12.2 0.1 1.3 1 0 0 1 1 1 0 SLIDE ABC_tran PF00005.22 gi|89256325|ref|YP_513687.1| - 0.092 13.0 0.0 0.099 12.9 0.0 1.3 1 1 0 1 1 1 0 ABC transporter AAA_21 PF13304.1 gi|89256327|ref|YP_513689.1| - 5.8e-14 52.7 1.8 5.8e-14 52.7 1.2 2.7 2 1 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|89256327|ref|YP_513689.1| - 2.5e-10 39.9 0.3 1.1e-09 37.8 0.2 2.1 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain Toprim_2 PF13155.1 gi|89256327|ref|YP_513689.1| - 0.0022 18.2 1.2 0.0085 16.3 0.1 2.5 2 0 0 2 2 2 1 Toprim-like IMS PF00817.15 gi|89256328|ref|YP_513690.1| - 4.9e-50 169.2 0.1 9.9e-50 168.2 0.0 1.5 2 0 0 2 2 2 1 impB/mucB/samB family IMS_HHH PF11798.3 gi|89256328|ref|YP_513690.1| - 6.7e-08 32.1 0.2 1.6e-06 27.8 0.0 2.9 3 0 0 3 3 3 1 IMS family HHH motif IMS_C PF11799.3 gi|89256328|ref|YP_513690.1| - 1.7e-07 31.2 0.1 3.6e-07 30.1 0.1 1.6 1 0 0 1 1 1 1 impB/mucB/samB family C-terminal domain DUF4066 PF13278.1 gi|89256329|ref|YP_513691.1| - 1.2e-32 112.5 0.0 1.4e-32 112.2 0.0 1.0 1 0 0 1 1 1 1 Putative amidotransferase DJ-1_PfpI PF01965.19 gi|89256329|ref|YP_513691.1| - 1.2e-13 50.7 0.0 1.5e-13 50.4 0.0 1.1 1 0 0 1 1 1 1 DJ-1/PfpI family PH_3 PF14593.1 gi|89256329|ref|YP_513691.1| - 0.097 12.5 0.0 0.27 11.1 0.0 1.7 2 0 0 2 2 2 0 PH domain Ribonuc_red_sm PF00268.16 gi|89256330|ref|YP_513692.1| - 4.5e-36 124.2 0.6 6.8e-36 123.7 0.4 1.2 1 0 0 1 1 1 1 Ribonucleotide reductase, small chain Glutaredoxin PF00462.19 gi|89256330|ref|YP_513692.1| - 1.1e-10 41.2 0.1 4.7e-10 39.3 0.0 2.1 3 0 0 3 3 3 1 Glutaredoxin DUF836 PF05768.9 gi|89256330|ref|YP_513692.1| - 0.064 13.5 0.1 2.5 8.4 0.0 2.9 3 0 0 3 3 3 0 Glutaredoxin-like domain (DUF836) Glutaredoxin PF00462.19 gi|89256331|ref|YP_513693.1| - 6.4e-15 54.8 0.1 8.4e-15 54.5 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin Thioredoxin_3 PF13192.1 gi|89256331|ref|YP_513693.1| - 0.0023 17.6 0.2 0.007 16.1 0.1 1.8 1 1 0 1 1 1 1 Thioredoxin domain SH3BGR PF04908.10 gi|89256331|ref|YP_513693.1| - 0.0042 17.0 0.1 0.0058 16.5 0.1 1.1 1 0 0 1 1 1 1 SH3-binding, glutamic acid-rich protein Thioredoxin_7 PF13899.1 gi|89256331|ref|YP_513693.1| - 0.13 12.2 0.3 0.15 12.0 0.2 1.4 1 1 0 1 1 1 0 Thioredoxin-like Ribonuc_red_lgC PF02867.10 gi|89256332|ref|YP_513694.1| - 9.8e-114 380.8 0.0 2.3e-74 250.8 0.0 2.3 1 1 1 2 2 2 2 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.16 gi|89256332|ref|YP_513694.1| - 7.1e-08 32.1 0.1 1.6e-07 30.9 0.1 1.7 1 0 0 1 1 1 1 Ribonucleotide reductase, all-alpha domain DUF2661 PF10860.3 gi|89256332|ref|YP_513694.1| - 0.11 12.6 0.0 0.33 11.1 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF2661) Ldh_1_N PF00056.18 gi|89256333|ref|YP_513695.1| - 1.8e-42 144.4 1.6 2.9e-42 143.8 0.6 1.7 2 0 0 2 2 2 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.13 gi|89256333|ref|YP_513695.1| - 2.5e-31 108.7 0.1 3.1e-31 108.4 0.1 1.1 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain UDPG_MGDP_dh_N PF03721.9 gi|89256333|ref|YP_513695.1| - 0.00028 20.2 0.4 0.0048 16.3 0.3 2.2 1 1 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Glyco_hydro_4 PF02056.11 gi|89256333|ref|YP_513695.1| - 0.0025 17.1 2.7 0.013 14.8 0.2 2.6 2 1 1 3 3 3 2 Family 4 glycosyl hydrolase 3HCDH_N PF02737.13 gi|89256333|ref|YP_513695.1| - 0.32 10.6 3.6 1.6 8.3 0.3 3.0 3 1 0 3 3 3 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Bax1-I PF01027.15 gi|89256334|ref|YP_513696.1| - 1 8.9 30.6 3.5 7.1 0.3 3.0 1 1 2 3 3 3 0 Inhibitor of apoptosis-promoting Bax1 DUF2530 PF10745.4 gi|89256334|ref|YP_513696.1| - 1.9 8.4 5.1 5.1 7.1 0.0 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF2530) Arteri_Gl PF00951.13 gi|89256334|ref|YP_513696.1| - 2.5 7.6 13.2 2.1 7.9 8.3 1.7 1 1 0 1 1 1 0 Arterivirus GL envelope glycoprotein COQ7 PF03232.8 gi|89256335|ref|YP_513697.1| - 7.5e-20 71.0 0.0 8.8e-20 70.8 0.0 1.1 1 0 0 1 1 1 1 Ubiquinone biosynthesis protein COQ7 Ferritin PF00210.19 gi|89256335|ref|YP_513697.1| - 4.3e-05 23.3 0.1 0.00011 21.9 0.0 1.7 1 1 0 1 1 1 1 Ferritin-like domain Rubrerythrin PF02915.12 gi|89256335|ref|YP_513697.1| - 0.0012 19.1 0.4 0.094 13.0 0.0 2.5 2 1 1 3 3 3 1 Rubrerythrin DUF455 PF04305.9 gi|89256335|ref|YP_513697.1| - 0.016 14.5 0.2 0.32 10.2 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF455) SLT PF01464.15 gi|89256336|ref|YP_513698.1| - 1.4e-11 43.9 2.4 2.1e-11 43.3 1.6 1.3 1 0 0 1 1 1 1 Transglycosylase SLT domain DUF1402 PF07182.6 gi|89256336|ref|YP_513698.1| - 0.0077 15.1 0.4 0.011 14.5 0.1 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF1402) UPF0020 PF01170.13 gi|89256336|ref|YP_513698.1| - 0.05 13.1 0.3 0.19 11.2 0.0 1.8 1 1 1 2 2 2 0 Putative RNA methylase family UPF0020 DUF3128 PF11326.3 gi|89256336|ref|YP_513698.1| - 0.21 11.7 1.3 0.49 10.5 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3128) ThiF PF00899.16 gi|89256337|ref|YP_513699.1| - 3e-24 85.3 0.2 3.5e-24 85.1 0.1 1.1 1 0 0 1 1 1 1 ThiF family ELFV_dehydrog PF00208.16 gi|89256337|ref|YP_513699.1| - 0.0025 17.4 0.1 0.0025 17.4 0.1 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ApbA PF02558.11 gi|89256337|ref|YP_513699.1| - 0.0028 17.0 2.5 0.023 14.1 0.1 2.1 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA Shikimate_DH PF01488.15 gi|89256337|ref|YP_513699.1| - 0.0057 16.7 0.5 0.0079 16.2 0.3 1.3 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.1 gi|89256337|ref|YP_513699.1| - 0.035 14.3 0.1 0.046 13.9 0.0 1.3 1 0 0 1 1 1 0 Putative NAD(P)-binding Saccharop_dh PF03435.13 gi|89256337|ref|YP_513699.1| - 0.042 12.8 0.2 0.045 12.7 0.1 1.1 1 0 0 1 1 1 0 Saccharopine dehydrogenase Cons_hypoth95 PF03602.10 gi|89256337|ref|YP_513699.1| - 0.048 13.0 0.0 0.048 13.0 0.0 1.1 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Abhydrolase_5 PF12695.2 gi|89256338|ref|YP_513700.1| - 0.00068 19.4 0.0 0.0012 18.5 0.0 1.5 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|89256338|ref|YP_513700.1| - 0.0048 16.8 0.0 0.013 15.4 0.0 1.7 1 1 0 1 1 1 1 Alpha/beta hydrolase family LIP PF03583.9 gi|89256338|ref|YP_513700.1| - 0.0068 15.6 0.3 0.021 14.0 0.1 1.8 2 0 0 2 2 2 1 Secretory lipase HAD_2 PF13419.1 gi|89256339|ref|YP_513701.1| - 1.8e-23 83.6 0.0 2.1e-23 83.4 0.0 1.0 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|89256339|ref|YP_513701.1| - 1.1e-05 25.9 0.0 0.0056 17.1 0.0 2.0 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.7 gi|89256339|ref|YP_513701.1| - 0.0078 15.3 0.3 0.01 15.0 0.2 1.1 1 0 0 1 1 1 1 Putative Phosphatase HAD PF12710.2 gi|89256339|ref|YP_513701.1| - 0.082 13.0 0.0 0.11 12.6 0.0 1.3 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase AhpC-TSA PF00578.16 gi|89256340|ref|YP_513702.1| - 2e-30 105.0 0.0 2.6e-30 104.6 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|89256340|ref|YP_513702.1| - 1.4e-17 63.6 0.0 1.8e-17 63.2 0.0 1.1 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.4 gi|89256340|ref|YP_513702.1| - 3.2e-13 49.0 0.0 7.5e-13 47.8 0.0 1.7 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin AXH PF08517.7 gi|89256341|ref|YP_513703.1| - 0.067 13.3 0.0 0.12 12.5 0.0 1.3 1 0 0 1 1 1 0 Ataxin-1 and HBP1 module (AXH) NfrA_C PF13283.1 gi|89256342|ref|YP_513704.1| - 0.05 12.9 0.0 0.081 12.2 0.0 1.3 1 0 0 1 1 1 0 Bacteriophage N adsorption protein A C-term PhnA PF03831.9 gi|89256343|ref|YP_513705.1| - 2.7e-18 65.1 1.9 3.3e-18 64.8 1.3 1.1 1 0 0 1 1 1 1 PhnA protein PhnA_Zn_Ribbon PF08274.7 gi|89256343|ref|YP_513705.1| - 3e-15 55.6 3.7 5.2e-15 54.9 2.6 1.4 1 0 0 1 1 1 1 PhnA Zinc-Ribbon A2L_zn_ribbon PF08792.5 gi|89256343|ref|YP_513705.1| - 4.8e-05 22.6 0.7 8.7e-05 21.8 0.5 1.4 1 0 0 1 1 1 1 A2L zinc ribbon domain OrfB_Zn_ribbon PF07282.6 gi|89256343|ref|YP_513705.1| - 0.00044 19.8 0.2 0.00084 18.9 0.0 1.6 2 0 0 2 2 2 1 Putative transposase DNA-binding domain UPF0547 PF10571.4 gi|89256343|ref|YP_513705.1| - 0.00046 19.8 0.1 0.0011 18.6 0.1 1.6 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 DUF2318 PF10080.4 gi|89256343|ref|YP_513705.1| - 0.00075 19.2 0.5 0.00079 19.1 0.3 1.3 1 1 0 1 1 1 1 Predicted membrane protein (DUF2318) TF_Zn_Ribbon PF08271.7 gi|89256343|ref|YP_513705.1| - 0.0011 18.2 0.3 0.0019 17.4 0.2 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding DNA_RNApol_7kD PF03604.8 gi|89256343|ref|YP_513705.1| - 0.013 14.9 0.6 0.033 13.6 0.4 1.7 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit HypA PF01155.14 gi|89256343|ref|YP_513705.1| - 0.014 15.0 0.2 0.021 14.4 0.1 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family TFIIS_C PF01096.13 gi|89256343|ref|YP_513705.1| - 0.026 14.1 1.2 4.7 6.9 0.0 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Baculo_ME53 PF06061.6 gi|89256343|ref|YP_513705.1| - 0.032 13.2 0.1 0.037 13.0 0.1 1.2 1 0 0 1 1 1 0 Baculoviridae ME53 DZR PF12773.2 gi|89256343|ref|YP_513705.1| - 0.036 13.8 0.4 0.06 13.1 0.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon Prok-RING_1 PF14446.1 gi|89256343|ref|YP_513705.1| - 0.041 13.6 0.3 0.062 13.0 0.2 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-ribbon_3 PF13248.1 gi|89256343|ref|YP_513705.1| - 0.067 12.4 0.8 0.17 11.1 0.5 1.7 1 1 0 1 1 1 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|89256343|ref|YP_513705.1| - 0.11 12.2 1.4 3.2 7.6 0.0 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Cys_rich_CPCC PF14206.1 gi|89256343|ref|YP_513705.1| - 0.11 12.0 0.4 0.16 11.5 0.3 1.2 1 0 0 1 1 1 0 Cysteine-rich CPCC Zn-ribbon_8 PF09723.5 gi|89256343|ref|YP_513705.1| - 0.34 10.8 2.0 2.3 8.2 1.3 2.0 1 1 1 2 2 2 0 Zinc ribbon domain DUF4379 PF14311.1 gi|89256343|ref|YP_513705.1| - 0.41 10.4 2.4 0.59 9.9 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4379) zinc_ribbon_5 PF13719.1 gi|89256343|ref|YP_513705.1| - 0.44 10.1 2.0 8.7 6.0 1.4 2.5 1 1 0 1 1 1 0 zinc-ribbon domain RNA_POL_M_15KD PF02150.11 gi|89256343|ref|YP_513705.1| - 0.44 10.2 2.3 0.9 9.2 1.6 1.6 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit zf-B_box PF00643.19 gi|89256343|ref|YP_513705.1| - 0.46 10.4 2.9 0.76 9.7 2.0 1.3 1 1 0 1 1 1 0 B-box zinc finger zinc_ribbon_2 PF13240.1 gi|89256343|ref|YP_513705.1| - 2.4 7.7 5.6 2.4 7.7 2.5 2.1 2 1 0 2 2 2 0 zinc-ribbon domain RNase_T PF00929.19 gi|89256347|ref|YP_513709.1| - 2.3e-29 102.8 0.1 3.1e-29 102.3 0.1 1.2 1 0 0 1 1 1 1 Exonuclease RNase_H_2 PF13482.1 gi|89256347|ref|YP_513709.1| - 0.00045 20.0 1.1 0.0052 16.5 0.8 2.0 1 1 0 1 1 1 1 RNase_H superfamily VanY PF02557.12 gi|89256348|ref|YP_513710.1| - 3e-37 127.3 0.1 3.6e-37 127.1 0.1 1.1 1 0 0 1 1 1 1 D-alanyl-D-alanine carboxypeptidase Peptidase_M15_3 PF08291.6 gi|89256348|ref|YP_513710.1| - 0.0068 16.2 0.0 0.66 9.8 0.0 2.2 2 0 0 2 2 2 2 Peptidase M15 YvbH_ext PF11724.3 gi|89256348|ref|YP_513710.1| - 0.062 12.9 1.9 0.16 11.6 1.3 1.7 1 1 0 1 1 1 0 YvbH-like oligomerisation region TPR_11 PF13414.1 gi|89256349|ref|YP_513711.1| - 0.078 12.6 5.4 9.8 5.9 0.1 3.8 3 0 0 3 3 3 0 TPR repeat Spore_III_AB PF09548.5 gi|89256349|ref|YP_513711.1| - 0.11 12.2 3.4 0.11 12.2 0.3 2.2 2 0 0 2 2 2 0 Stage III sporulation protein AB (spore_III_AB) Aldedh PF00171.17 gi|89256350|ref|YP_513712.1| - 1.7e-29 102.4 0.0 1.9e-29 102.3 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family Trns_repr_metal PF02583.12 gi|89256351|ref|YP_513713.1| - 2e-25 88.8 4.1 2.1e-25 88.6 2.9 1.0 1 0 0 1 1 1 1 Metal-sensitive transcriptional repressor TPR_21 PF09976.4 gi|89256351|ref|YP_513713.1| - 0.089 12.7 0.1 0.096 12.6 0.1 1.1 1 0 0 1 1 1 0 Tetratricopeptide repeat Glutaredoxin PF00462.19 gi|89256352|ref|YP_513714.1| - 5.5e-07 29.4 0.1 9.9e-07 28.6 0.1 1.4 1 0 0 1 1 1 1 Glutaredoxin MauE PF07291.6 gi|89256352|ref|YP_513714.1| - 0.00014 21.5 8.4 0.00028 20.5 5.8 1.5 1 1 0 1 1 1 1 Methylamine utilisation protein MauE Thioredoxin_3 PF13192.1 gi|89256352|ref|YP_513714.1| - 0.0042 16.8 0.1 0.0084 15.8 0.1 1.5 1 1 0 1 1 1 1 Thioredoxin domain AFT PF08731.6 gi|89256352|ref|YP_513714.1| - 0.07 13.3 0.0 0.12 12.5 0.0 1.4 1 0 0 1 1 1 0 Transcription factor AFT DUF4191 PF13829.1 gi|89256352|ref|YP_513714.1| - 1 8.4 6.1 0.46 9.5 0.3 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4191) LysR_substrate PF03466.15 gi|89256353|ref|YP_513715.1| - 5.9e-34 117.0 0.0 7.9e-34 116.5 0.0 1.0 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.22 gi|89256353|ref|YP_513715.1| - 2.6e-14 52.6 0.0 4.4e-14 51.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family Redoxin PF08534.5 gi|89256354|ref|YP_513716.1| - 2.9e-26 91.7 0.0 3.3e-26 91.5 0.0 1.1 1 0 0 1 1 1 1 Redoxin AhpC-TSA PF00578.16 gi|89256354|ref|YP_513716.1| - 6.5e-12 45.2 0.0 7.1e-12 45.1 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family CAT_RBD PF03123.10 gi|89256354|ref|YP_513716.1| - 0.086 12.5 0.1 0.3 10.7 0.0 1.9 2 0 0 2 2 2 0 CAT RNA binding domain adh_short PF00106.20 gi|89256355|ref|YP_513717.1| - 2.9e-11 43.5 0.4 3e-09 37.0 0.3 2.2 1 1 0 1 1 1 1 short chain dehydrogenase NAD_binding_10 PF13460.1 gi|89256355|ref|YP_513717.1| - 1e-07 32.1 0.1 2e-07 31.2 0.0 1.5 1 0 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|89256355|ref|YP_513717.1| - 1.1e-07 31.5 0.1 1.7e-07 30.9 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family adh_short_C2 PF13561.1 gi|89256355|ref|YP_513717.1| - 4.5e-07 29.8 0.4 1.7e-06 27.9 0.3 1.8 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase RmlD_sub_bind PF04321.12 gi|89256355|ref|YP_513717.1| - 4.7e-05 22.4 0.0 8.4e-05 21.5 0.0 1.5 2 0 0 2 2 2 1 RmlD substrate binding domain KR PF08659.5 gi|89256355|ref|YP_513717.1| - 0.0016 18.1 0.1 0.25 10.9 0.0 2.3 1 1 1 2 2 2 2 KR domain DapB_N PF01113.15 gi|89256355|ref|YP_513717.1| - 0.0081 16.0 0.1 0.016 15.1 0.0 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus DXP_reductoisom PF02670.11 gi|89256355|ref|YP_513717.1| - 0.028 14.9 0.2 0.086 13.3 0.1 1.9 1 1 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase NmrA PF05368.8 gi|89256355|ref|YP_513717.1| - 0.048 12.9 1.4 0.14 11.3 1.0 1.8 1 1 0 1 1 1 0 NmrA-like family Cytidylate_kin PF02224.13 gi|89256356|ref|YP_513718.1| - 2.1e-55 186.4 1.7 2.6e-55 186.1 1.2 1.1 1 0 0 1 1 1 1 Cytidylate kinase AAA_17 PF13207.1 gi|89256356|ref|YP_513718.1| - 1.2e-14 55.1 0.2 3.7e-14 53.5 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|89256356|ref|YP_513718.1| - 4.3e-07 30.3 0.1 1e-06 29.0 0.1 1.6 1 1 0 1 1 1 1 AAA domain Cytidylate_kin2 PF13189.1 gi|89256356|ref|YP_513718.1| - 2.8e-06 27.3 0.2 7.4e-06 25.9 0.1 1.6 1 1 0 1 1 1 1 Cytidylate kinase-like family ABC_tran PF00005.22 gi|89256356|ref|YP_513718.1| - 0.00059 20.1 0.0 0.00095 19.4 0.0 1.6 1 1 0 1 1 1 1 ABC transporter SKI PF01202.17 gi|89256356|ref|YP_513718.1| - 0.0021 17.9 0.2 0.28 11.0 0.0 2.4 2 0 0 2 2 2 1 Shikimate kinase ATP_bind_2 PF03668.10 gi|89256356|ref|YP_513718.1| - 0.0023 17.0 0.3 0.07 12.1 0.0 2.2 2 1 0 2 2 2 1 P-loop ATPase protein family AAA_22 PF13401.1 gi|89256356|ref|YP_513718.1| - 0.0025 17.9 0.0 0.015 15.4 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|89256356|ref|YP_513718.1| - 0.0076 16.4 0.0 0.014 15.5 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.1 gi|89256356|ref|YP_513718.1| - 0.011 15.6 0.1 0.022 14.6 0.0 1.7 1 1 0 1 1 1 0 AAA domain ADK PF00406.17 gi|89256356|ref|YP_513718.1| - 0.011 15.5 0.0 0.035 13.9 0.0 1.7 1 1 1 2 2 2 0 Adenylate kinase DUF258 PF03193.11 gi|89256356|ref|YP_513718.1| - 0.012 14.8 0.0 0.019 14.1 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_28 PF13521.1 gi|89256356|ref|YP_513718.1| - 0.025 14.5 0.0 0.61 10.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.17 gi|89256356|ref|YP_513718.1| - 0.034 12.9 0.0 0.077 11.8 0.0 1.6 1 0 0 1 1 1 0 NB-ARC domain SRP54 PF00448.17 gi|89256356|ref|YP_513718.1| - 0.065 12.6 0.2 0.4 10.0 0.0 2.1 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain IstB_IS21 PF01695.12 gi|89256356|ref|YP_513718.1| - 0.067 12.5 0.0 0.16 11.3 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein Aminotran_5 PF00266.14 gi|89256357|ref|YP_513719.1| - 6.1e-33 114.0 0.0 7.8e-33 113.7 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V DUF3091 PF11291.3 gi|89256357|ref|YP_513719.1| - 0.00054 19.8 2.2 0.63 10.0 0.0 3.6 3 1 0 3 3 3 2 Protein of unknown function (DUF3091) CoA_trans PF01144.18 gi|89256357|ref|YP_513719.1| - 0.057 12.6 0.0 0.091 11.9 0.0 1.3 1 0 0 1 1 1 0 Coenzyme A transferase DDE_3 PF13358.1 gi|89256359|ref|YP_513721.1| - 1.7e-31 108.9 0.0 2.8e-31 108.2 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.11 gi|89256359|ref|YP_513721.1| - 1.5e-07 31.0 0.2 1.1e-06 28.3 0.1 2.1 2 0 0 2 2 2 1 Transposase DDE_1 PF03184.14 gi|89256359|ref|YP_513721.1| - 5.8e-07 28.8 0.1 9.5e-07 28.1 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_28 PF13518.1 gi|89256359|ref|YP_513721.1| - 0.00058 19.8 0.0 0.0018 18.2 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain rve PF00665.21 gi|89256359|ref|YP_513721.1| - 0.00072 19.6 0.0 0.0013 18.7 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.1 gi|89256359|ref|YP_513721.1| - 0.0087 15.6 0.0 0.029 14.0 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.1 gi|89256359|ref|YP_513721.1| - 0.02 15.0 0.0 0.032 14.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix DDE_Tnp_ISAZ013 PF07592.6 gi|89256359|ref|YP_513721.1| - 0.039 12.6 0.6 0.32 9.7 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain His_Phos_2 PF00328.17 gi|89256360|ref|YP_513722.1| - 1.9e-15 57.0 0.0 6.2e-15 55.3 0.0 1.8 1 1 0 1 1 1 1 Histidine phosphatase superfamily (branch 2) BRCT PF00533.21 gi|89256360|ref|YP_513722.1| - 0.065 13.3 0.4 0.31 11.1 0.1 2.3 2 1 1 3 3 3 0 BRCA1 C Terminus (BRCT) domain Coprogen_oxidas PF01218.13 gi|89256361|ref|YP_513723.1| - 5e-137 455.3 0.4 5.6e-137 455.1 0.3 1.0 1 0 0 1 1 1 1 Coproporphyrinogen III oxidase DDE_Tnp_1_2 PF13586.1 gi|89256362|ref|YP_513724.1| - 1.3e-15 57.3 0.1 3.6e-15 55.9 0.1 1.8 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|89256362|ref|YP_513724.1| - 8.9e-13 48.2 0.8 2.9e-12 46.6 0.5 1.8 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|89256362|ref|YP_513724.1| - 2.8e-09 36.9 0.6 9.8e-09 35.1 0.1 2.0 2 0 0 2 2 2 1 Transposase DDE domain DUF4096 PF13340.1 gi|89256362|ref|YP_513724.1| - 0.0013 18.5 0.0 0.0023 17.7 0.0 1.4 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) Pilin PF00114.14 gi|89256362|ref|YP_513724.1| - 0.003 18.2 0.2 0.0081 16.8 0.0 1.7 2 0 0 2 2 2 1 Pilin (bacterial filament) Ribosomal_S6 PF01250.12 gi|89256363|ref|YP_513725.1| - 2.1e-30 104.4 0.0 2.6e-30 104.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S6 Transcript_VP30 PF11507.3 gi|89256363|ref|YP_513725.1| - 0.073 12.8 0.0 0.092 12.5 0.0 1.2 1 0 0 1 1 1 0 Ebola virus-specific transcription factor VP30 SERTA PF06031.8 gi|89256363|ref|YP_513725.1| - 0.11 11.8 0.1 0.28 10.5 0.1 1.6 1 0 0 1 1 1 0 SERTA motif Ribosomal_S18 PF01084.15 gi|89256364|ref|YP_513726.1| - 2.6e-26 91.2 0.2 3.1e-26 90.9 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S18 Ribosomal_L9_N PF01281.14 gi|89256365|ref|YP_513727.1| - 5.6e-25 86.3 0.5 9.8e-25 85.5 0.3 1.4 1 0 0 1 1 1 1 Ribosomal protein L9, N-terminal domain Ribosomal_L9_C PF03948.9 gi|89256365|ref|YP_513727.1| - 5.9e-25 87.1 2.7 1.3e-24 86.1 1.8 1.5 1 0 0 1 1 1 1 Ribosomal protein L9, C-terminal domain DnaB_C PF03796.10 gi|89256366|ref|YP_513728.1| - 6.7e-108 359.4 1.4 8.8e-108 359.0 0.3 1.6 2 0 0 2 2 2 1 DnaB-like helicase C terminal domain DnaB PF00772.16 gi|89256366|ref|YP_513728.1| - 3.3e-30 103.9 0.9 6.1e-30 103.1 0.6 1.5 1 0 0 1 1 1 1 DnaB-like helicase N terminal domain AAA_25 PF13481.1 gi|89256366|ref|YP_513728.1| - 2.3e-15 56.5 0.0 3.9e-15 55.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain KaiC PF06745.8 gi|89256366|ref|YP_513728.1| - 7.2e-05 22.0 0.5 0.00054 19.1 0.0 2.5 2 2 1 3 3 3 1 KaiC AAA_31 PF13614.1 gi|89256366|ref|YP_513728.1| - 0.01 15.7 0.0 0.027 14.4 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|89256366|ref|YP_513728.1| - 0.015 15.4 0.0 0.054 13.6 0.0 1.9 1 1 0 1 1 1 0 AAA domain Hormone_1 PF00103.15 gi|89256366|ref|YP_513728.1| - 0.39 10.0 1.8 7.5 5.8 0.1 2.3 2 0 0 2 2 2 0 Somatotropin hormone family Radical_SAM PF04055.16 gi|89256367|ref|YP_513729.1| - 3.8e-13 49.9 0.1 2.4e-12 47.3 0.1 2.3 1 1 1 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|89256367|ref|YP_513729.1| - 1.6e-05 24.9 0.0 0.0013 18.7 0.0 2.4 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|89256367|ref|YP_513729.1| - 0.016 15.3 0.0 0.14 12.2 0.0 2.2 2 0 0 2 2 2 0 4Fe-4S single cluster domain TPR_12 PF13424.1 gi|89256368|ref|YP_513730.1| - 1.5e-09 37.6 13.4 6.3e-07 29.2 0.4 3.2 2 1 1 3 3 3 2 Tetratricopeptide repeat Apc3 PF12895.2 gi|89256368|ref|YP_513730.1| - 1.4e-05 25.1 21.0 4.7e-05 23.4 4.3 3.4 2 1 1 3 3 3 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_19 PF14559.1 gi|89256368|ref|YP_513730.1| - 4e-05 23.8 1.3 4e-05 23.8 0.9 4.4 3 1 2 5 5 5 1 Tetratricopeptide repeat TPR_8 PF13181.1 gi|89256368|ref|YP_513730.1| - 0.0059 16.2 0.3 0.0059 16.2 0.2 5.7 6 0 0 6 6 6 1 Tetratricopeptide repeat TPR_15 PF13429.1 gi|89256368|ref|YP_513730.1| - 0.0071 15.4 9.1 0.34 9.9 2.1 2.9 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_16 PF13432.1 gi|89256368|ref|YP_513730.1| - 0.013 16.1 8.9 0.39 11.4 0.1 4.2 3 1 2 5 5 5 0 Tetratricopeptide repeat TPR_10 PF13374.1 gi|89256368|ref|YP_513730.1| - 0.014 15.2 5.6 9.4 6.3 0.0 4.6 5 0 0 5 5 5 0 Tetratricopeptide repeat DUF1771 PF08590.5 gi|89256368|ref|YP_513730.1| - 0.015 15.2 0.7 0.015 15.2 0.5 2.5 4 0 0 4 4 2 0 Domain of unknown function (DUF1771) TPR_2 PF07719.12 gi|89256368|ref|YP_513730.1| - 0.033 14.0 0.2 0.033 14.0 0.1 5.7 5 1 1 6 6 6 0 Tetratricopeptide repeat TPR_6 PF13174.1 gi|89256368|ref|YP_513730.1| - 0.1 13.1 0.4 0.1 13.1 0.3 4.7 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_14 PF13428.1 gi|89256368|ref|YP_513730.1| - 0.29 11.8 6.2 6.2 7.7 0.3 4.2 2 1 3 5 5 4 0 Tetratricopeptide repeat TPR_11 PF13414.1 gi|89256368|ref|YP_513730.1| - 0.42 10.3 17.4 0.029 14.0 1.8 3.5 1 1 3 4 4 4 0 TPR repeat TPR_7 PF13176.1 gi|89256368|ref|YP_513730.1| - 1 9.3 6.0 7.9 6.5 0.0 4.2 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_17 PF13431.1 gi|89256368|ref|YP_513730.1| - 1.4 9.2 13.7 1.3 9.3 0.4 5.0 6 0 0 6 6 6 0 Tetratricopeptide repeat MU117 PF15474.1 gi|89256368|ref|YP_513730.1| - 5 7.6 6.9 2.5 8.6 0.3 2.9 2 1 1 3 3 3 0 Meiotically up-regulated gene family PseudoU_synth_2 PF00849.17 gi|89256369|ref|YP_513731.1| - 1.6e-19 70.2 0.0 1.1e-18 67.5 0.0 2.1 1 1 0 1 1 1 1 RNA pseudouridylate synthase S4 PF01479.20 gi|89256369|ref|YP_513731.1| - 3e-12 45.7 0.1 7e-12 44.5 0.1 1.7 1 0 0 1 1 1 1 S4 domain RNA_helicase PF00910.17 gi|89256370|ref|YP_513732.1| - 0.11 12.6 1.1 0.15 12.2 0.7 1.2 1 0 0 1 1 1 0 RNA helicase Acetyltransf_1 PF00583.19 gi|89256371|ref|YP_513733.1| - 6e-11 42.2 0.0 8.4e-11 41.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|89256371|ref|YP_513733.1| - 9.3e-10 38.5 0.1 1.3e-09 38.0 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|89256371|ref|YP_513733.1| - 4.7e-09 35.8 0.0 5.9e-09 35.5 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.1 gi|89256371|ref|YP_513733.1| - 1e-07 32.0 0.8 1.3e-07 31.6 0.6 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|89256371|ref|YP_513733.1| - 1.5e-05 24.9 0.0 2.3e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|89256371|ref|YP_513733.1| - 0.0043 17.2 0.0 0.0048 17.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain ENT PF03735.9 gi|89256371|ref|YP_513733.1| - 0.0048 16.5 0.1 0.0079 15.9 0.0 1.4 1 0 0 1 1 1 1 ENT domain GTP_EFTU PF00009.22 gi|89256372|ref|YP_513734.1| - 7.7e-45 152.6 0.1 3.2e-44 150.6 0.0 1.9 1 1 1 2 2 2 1 Elongation factor Tu GTP binding domain MMR_HSR1 PF01926.18 gi|89256372|ref|YP_513734.1| - 1.9e-08 34.2 0.0 4.8e-08 32.9 0.0 1.7 1 1 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.20 gi|89256372|ref|YP_513734.1| - 6.4e-08 32.6 0.1 1.6e-07 31.3 0.1 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 2 Miro PF08477.8 gi|89256372|ref|YP_513734.1| - 5.4e-05 23.6 0.0 0.00025 21.5 0.0 2.1 1 1 0 1 1 1 1 Miro-like protein SRPRB PF09439.5 gi|89256372|ref|YP_513734.1| - 0.0054 15.9 0.1 0.39 9.9 0.0 2.3 1 1 1 2 2 2 1 Signal recognition particle receptor beta subunit Gtr1_RagA PF04670.7 gi|89256372|ref|YP_513734.1| - 0.0059 15.7 0.2 0.17 11.0 0.0 2.2 2 0 0 2 2 2 1 Gtr1/RagA G protein conserved region Dynamin_N PF00350.18 gi|89256372|ref|YP_513734.1| - 0.026 14.3 0.1 7.2 6.3 0.0 2.4 1 1 0 2 2 2 0 Dynamin family FeoB_N PF02421.13 gi|89256372|ref|YP_513734.1| - 0.026 13.8 0.0 0.16 11.2 0.0 2.2 2 1 0 2 2 2 0 Ferrous iron transport protein B UPF0228 PF05727.6 gi|89256373|ref|YP_513735.1| - 0.08 12.6 0.3 0.12 12.1 0.2 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0228) APS_kinase PF01583.15 gi|89256374|ref|YP_513736.1| - 3.2e-54 182.8 0.0 3.7e-54 182.6 0.0 1.0 1 0 0 1 1 1 1 Adenylylsulphate kinase RNase_Zc3h12a PF11977.3 gi|89256374|ref|YP_513736.1| - 0.065 13.0 0.0 0.079 12.7 0.0 1.2 1 0 0 1 1 1 0 Zc3h12a-like Ribonuclease NYN domain DNA_ligase_aden PF01653.13 gi|89256376|ref|YP_513738.1| - 0.044 12.7 0.1 0.053 12.4 0.1 1.0 1 0 0 1 1 1 0 NAD-dependent DNA ligase adenylation domain PQ-loop PF04193.9 gi|89256377|ref|YP_513739.1| - 2.5e-14 52.5 19.9 5.9e-11 41.7 4.7 3.2 4 0 0 4 4 4 2 PQ loop repeat MSC PF09402.5 gi|89256377|ref|YP_513739.1| - 0.55 8.8 5.2 0.11 11.2 0.9 1.7 1 1 1 2 2 2 0 Man1-Src1p-C-terminal domain FKBP_N PF01346.13 gi|89256378|ref|YP_513740.1| - 7.6e-07 29.2 0.6 0.00049 20.1 0.1 2.1 1 1 1 2 2 2 2 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase GRASP55_65 PF04495.9 gi|89256378|ref|YP_513740.1| - 0.12 12.4 0.0 0.14 12.1 0.0 1.2 1 0 0 1 1 1 0 GRASP55/65 PDZ-like domain polyprenyl_synt PF00348.12 gi|89256379|ref|YP_513741.1| - 6.3e-74 248.0 2.5 7.8e-74 247.8 1.7 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase HEPPP_synt_1 PF07307.6 gi|89256379|ref|YP_513741.1| - 0.022 14.2 0.2 0.045 13.1 0.1 1.5 1 0 0 1 1 1 0 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 HTH_12 PF08461.5 gi|89256379|ref|YP_513741.1| - 0.2 11.3 0.9 0.43 10.3 0.1 1.9 2 0 0 2 2 2 0 Ribonuclease R winged-helix domain FKBP_N PF01346.13 gi|89256380|ref|YP_513742.1| - 1.2e-13 51.1 5.8 2.4e-13 50.2 4.0 1.6 1 1 0 1 1 1 1 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase FKBP_C PF00254.23 gi|89256380|ref|YP_513742.1| - 5.1e-09 36.0 0.0 1.9e-08 34.1 0.0 1.9 2 0 0 2 2 2 1 FKBP-type peptidyl-prolyl cis-trans isomerase ATP_bind_3 PF01171.15 gi|89256381|ref|YP_513743.1| - 2.4e-16 59.7 0.0 4e-16 59.0 0.0 1.3 1 0 0 1 1 1 1 PP-loop family DUF1280 PF06918.9 gi|89256381|ref|YP_513743.1| - 0.012 14.8 0.1 0.02 14.0 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1280) Asn_synthase PF00733.16 gi|89256381|ref|YP_513743.1| - 0.1 12.0 0.0 0.26 10.7 0.0 1.6 1 1 0 1 1 1 0 Asparagine synthase 4HBT_2 PF13279.1 gi|89256382|ref|YP_513744.1| - 1.6e-11 44.7 0.0 2e-11 44.4 0.0 1.0 1 0 0 1 1 1 1 Thioesterase-like superfamily Acyl-ACP_TE PF01643.12 gi|89256382|ref|YP_513744.1| - 1.1e-09 37.6 0.2 0.00081 18.4 0.2 2.0 2 0 0 2 2 2 2 Acyl-ACP thioesterase 4HBT PF03061.17 gi|89256382|ref|YP_513744.1| - 1.5e-08 34.6 0.0 2.1e-08 34.1 0.0 1.2 1 0 0 1 1 1 1 Thioesterase superfamily SLT PF01464.15 gi|89256383|ref|YP_513745.1| - 5.4e-07 29.1 0.3 1.1e-06 28.1 0.1 1.5 1 1 1 2 2 2 1 Transglycosylase SLT domain DUF4223 PF13978.1 gi|89256383|ref|YP_513745.1| - 0.073 12.8 0.3 0.13 11.9 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4223) DUF2706 PF10913.3 gi|89256383|ref|YP_513745.1| - 0.088 12.4 0.1 0.16 11.6 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2706) Peptidase_S13 PF02113.10 gi|89256384|ref|YP_513746.1| - 5.4e-86 288.8 0.6 6.5e-86 288.5 0.4 1.0 1 0 0 1 1 1 1 D-Ala-D-Ala carboxypeptidase 3 (S13) family Beta-lactamase2 PF13354.1 gi|89256384|ref|YP_513746.1| - 1.1e-05 25.0 0.0 0.064 12.6 0.0 2.7 2 1 0 2 2 2 2 Beta-lactamase enzyme family Transpeptidase PF00905.17 gi|89256384|ref|YP_513746.1| - 0.0022 17.0 0.5 0.47 9.4 0.2 3.2 3 1 0 3 3 3 2 Penicillin binding protein transpeptidase domain Ribosomal_S21 PF01165.15 gi|89256385|ref|YP_513747.1| - 5.1e-24 83.4 6.4 6e-24 83.2 4.4 1.1 1 0 0 1 1 1 1 Ribosomal protein S21 YqeY PF09424.5 gi|89256386|ref|YP_513748.1| - 2.1e-52 176.7 14.7 2.3e-52 176.6 10.2 1.0 1 0 0 1 1 1 1 Yqey-like protein DUF3349 PF11829.3 gi|89256386|ref|YP_513748.1| - 0.0075 16.6 4.6 0.0079 16.5 0.1 2.3 1 1 1 2 2 2 1 Protein of unknown function (DUF3349) GatB_Yqey PF02637.13 gi|89256386|ref|YP_513748.1| - 0.008 15.8 11.3 0.17 11.6 7.8 2.3 1 1 0 1 1 1 1 GatB domain DUF3764 PF12594.3 gi|89256386|ref|YP_513748.1| - 0.024 14.3 0.4 0.041 13.6 0.3 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3764) AHS1 PF02682.11 gi|89256386|ref|YP_513748.1| - 0.11 11.8 1.3 0.14 11.5 0.9 1.1 1 0 0 1 1 1 0 Allophanate hydrolase subunit 1 BPL_N PF09825.4 gi|89256386|ref|YP_513748.1| - 0.12 11.1 2.0 0.13 10.9 1.4 1.2 1 0 0 1 1 1 0 Biotin-protein ligase, N terminal DnaB_2 PF07261.6 gi|89256386|ref|YP_513748.1| - 0.2 11.2 5.2 2.2 7.9 0.1 2.4 2 1 0 2 2 2 0 Replication initiation and membrane attachment PWI PF01480.12 gi|89256386|ref|YP_513748.1| - 0.73 9.9 4.9 0.54 10.3 1.6 2.2 2 1 0 2 2 2 0 PWI domain ATC_hydrolase PF14196.1 gi|89256386|ref|YP_513748.1| - 2 8.8 4.8 1.2 9.5 0.2 2.1 1 1 1 2 2 2 0 L-2-amino-thiazoline-4-carboxylic acid hydrolase Toprim_N PF08275.6 gi|89256387|ref|YP_513749.1| - 4.7e-40 136.4 2.1 5.6e-40 136.2 0.1 2.2 2 0 0 2 2 2 1 DNA primase catalytic core, N-terminal domain zf-CHC2 PF01807.15 gi|89256387|ref|YP_513749.1| - 6.7e-39 131.4 2.9 1.4e-38 130.3 0.5 2.4 2 0 0 2 2 2 1 CHC2 zinc finger Toprim_4 PF13662.1 gi|89256387|ref|YP_513749.1| - 2.8e-18 65.7 0.0 6.3e-18 64.5 0.0 1.6 1 0 0 1 1 1 1 Toprim domain Toprim_2 PF13155.1 gi|89256387|ref|YP_513749.1| - 1.2e-13 51.1 0.0 6.1e-13 48.9 0.0 2.3 2 0 0 2 2 2 1 Toprim-like DnaB_bind PF10410.4 gi|89256387|ref|YP_513749.1| - 7.6e-10 38.6 0.1 2e-09 37.3 0.0 1.8 1 0 0 1 1 1 1 DnaB-helicase binding domain of primase Toprim PF01751.17 gi|89256387|ref|YP_513749.1| - 1.3e-07 31.5 0.5 9.1e-07 28.7 0.0 2.8 2 1 1 3 3 3 1 Toprim domain Sigma70_r2 PF04542.9 gi|89256388|ref|YP_513750.1| - 3e-22 78.0 0.2 6.2e-22 76.9 0.1 1.6 1 0 0 1 1 1 1 Sigma-70 region 2 Sigma70_r3 PF04539.11 gi|89256388|ref|YP_513750.1| - 1.6e-21 75.9 1.4 4.5e-20 71.3 0.3 3.1 2 0 0 2 2 2 1 Sigma-70 region 3 Sigma70_r4 PF04545.11 gi|89256388|ref|YP_513750.1| - 2e-18 65.4 2.5 4.7e-18 64.2 0.3 2.6 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_ner PF04546.8 gi|89256388|ref|YP_513750.1| - 1.1e-16 61.1 7.6 1.1e-16 61.1 5.3 2.8 3 2 0 3 3 3 1 Sigma-70, non-essential region Sigma70_r1_2 PF00140.15 gi|89256388|ref|YP_513750.1| - 9.9e-10 37.9 0.2 2.5e-09 36.6 0.1 1.7 1 0 0 1 1 1 1 Sigma-70 factor, region 1.2 Sigma70_r1_1 PF03979.9 gi|89256388|ref|YP_513750.1| - 3.4e-09 36.5 2.2 3.4e-09 36.5 1.5 3.3 4 0 0 4 4 4 1 Sigma-70 factor, region 1.1 PspA_IM30 PF04012.7 gi|89256388|ref|YP_513750.1| - 0.00026 20.4 1.1 0.0014 18.0 0.8 2.3 1 0 0 1 1 1 1 PspA/IM30 family DUF357 PF04010.8 gi|89256388|ref|YP_513750.1| - 0.16 11.7 0.5 0.84 9.3 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF357) DUF4145 PF13643.1 gi|89256388|ref|YP_513750.1| - 7.1 6.5 7.0 31 4.5 0.1 3.8 3 1 0 3 3 3 0 Domain of unknown function (DUF4145) Pyr_redox_2 PF07992.9 gi|89256389|ref|YP_513751.1| - 1e-12 48.3 0.0 1.6e-12 47.7 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|89256389|ref|YP_513751.1| - 2.8e-09 37.2 0.5 8.2e-06 26.1 0.2 3.2 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|89256389|ref|YP_513751.1| - 5.6e-06 26.5 0.0 0.045 13.8 0.0 2.5 1 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|89256389|ref|YP_513751.1| - 1.2e-05 25.1 0.4 0.0029 17.3 0.0 3.0 2 2 1 3 3 3 1 FAD-NAD(P)-binding TrkA_N PF02254.13 gi|89256389|ref|YP_513751.1| - 0.0073 16.3 0.1 0.7 9.9 0.0 2.6 2 0 0 2 2 2 1 TrkA-N domain DAO PF01266.19 gi|89256389|ref|YP_513751.1| - 0.013 14.4 0.1 6.2 5.6 0.0 3.5 4 0 0 4 4 4 0 FAD dependent oxidoreductase UDPG_MGDP_dh_N PF03721.9 gi|89256389|ref|YP_513751.1| - 0.018 14.4 0.1 0.048 13.0 0.0 1.6 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_8 PF13450.1 gi|89256389|ref|YP_513751.1| - 0.061 13.3 0.1 0.79 9.7 0.0 2.4 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain Saccharop_dh PF03435.13 gi|89256389|ref|YP_513751.1| - 0.14 11.0 0.8 0.18 10.7 0.0 1.5 2 0 0 2 2 2 0 Saccharopine dehydrogenase ThiF PF00899.16 gi|89256389|ref|YP_513751.1| - 0.39 10.5 1.9 6.5 6.5 0.1 2.7 2 1 0 2 2 2 0 ThiF family Glyco_hydro_31 PF01055.21 gi|89256390|ref|YP_513752.1| - 6.2e-20 71.4 0.4 7.2e-20 71.2 0.3 1.0 1 0 0 1 1 1 1 Glycosyl hydrolases family 31 Glyco_hydro_31 PF01055.21 gi|89256391|ref|YP_513753.1| - 1.7e-27 96.3 0.0 2e-27 96.1 0.0 1.0 1 0 0 1 1 1 1 Glycosyl hydrolases family 31 IL13 PF03487.8 gi|89256391|ref|YP_513753.1| - 0.22 11.2 0.9 3.4 7.4 0.3 2.3 2 0 0 2 2 2 0 Interleukin-13 Glyco_hydro_31 PF01055.21 gi|89256392|ref|YP_513754.1| - 1.4e-18 66.9 0.0 1.7e-18 66.7 0.0 1.0 1 0 0 1 1 1 1 Glycosyl hydrolases family 31 BPL_LplA_LipB PF03099.14 gi|89256393|ref|YP_513755.1| - 1.7e-16 60.3 0.3 2.5e-16 59.8 0.2 1.2 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family DUF493 PF04359.9 gi|89256394|ref|YP_513756.1| - 1.1e-25 89.7 0.4 1.3e-25 89.5 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF493) ACT_4 PF13291.1 gi|89256394|ref|YP_513756.1| - 0.064 13.6 0.0 0.073 13.4 0.0 1.2 1 0 0 1 1 1 0 ACT domain PUA_2 PF14306.1 gi|89256394|ref|YP_513756.1| - 0.083 12.2 0.1 0.096 12.0 0.0 1.3 1 1 0 1 1 1 0 PUA-like domain UDP-g_GGTase PF06427.6 gi|89256394|ref|YP_513756.1| - 0.13 11.5 0.4 0.36 10.1 0.1 1.7 1 1 1 2 2 2 0 UDP-glucose:Glycoprotein Glucosyltransferase Peptidase_S11 PF00768.15 gi|89256395|ref|YP_513757.1| - 1.2e-70 237.5 1.2 1.1e-56 191.8 0.2 2.3 2 0 0 2 2 2 2 D-alanyl-D-alanine carboxypeptidase Beta-lactamase2 PF13354.1 gi|89256395|ref|YP_513757.1| - 1.4e-14 53.9 0.2 2.1e-14 53.4 0.2 1.2 1 0 0 1 1 1 1 Beta-lactamase enzyme family PBP5_C PF07943.8 gi|89256395|ref|YP_513757.1| - 8e-13 48.2 1.0 2.2e-12 46.8 0.7 1.8 1 0 0 1 1 1 1 Penicillin-binding protein 5, C-terminal domain Beta-lactamase PF00144.19 gi|89256395|ref|YP_513757.1| - 0.013 14.5 0.1 0.72 8.8 0.0 2.2 2 0 0 2 2 2 0 Beta-lactamase Pyrophosphatase PF00719.14 gi|89256396|ref|YP_513758.1| - 6.7e-61 204.3 0.8 7.5e-61 204.1 0.5 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase Hydrolase_3 PF08282.7 gi|89256397|ref|YP_513759.1| - 2.5e-09 37.0 6.5 4.7e-08 32.9 0.9 2.2 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|89256397|ref|YP_513759.1| - 1.7e-06 28.6 2.5 0.00063 20.2 0.0 2.2 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|89256397|ref|YP_513759.1| - 0.00064 19.9 1.8 0.0014 18.8 0.0 2.2 3 0 0 3 3 3 1 Haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|89256397|ref|YP_513759.1| - 0.056 13.3 0.5 0.18 11.6 0.4 1.9 1 1 1 2 2 2 0 Haloacid dehalogenase-like hydrolase LptC PF06835.8 gi|89256398|ref|YP_513760.1| - 9.6e-48 161.8 6.1 1.2e-47 161.5 4.2 1.1 1 0 0 1 1 1 1 Lipopolysaccharide-assembly, LptC-related Peptidase_C80 PF11713.3 gi|89256398|ref|YP_513760.1| - 0.0074 16.1 0.2 0.01 15.6 0.1 1.3 1 0 0 1 1 1 1 Peptidase C80 family OstA PF03968.9 gi|89256399|ref|YP_513761.1| - 5.1e-11 42.5 0.5 2.4e-06 27.4 0.0 2.5 2 1 0 2 2 2 2 OstA-like protein ABC_tran PF00005.22 gi|89256400|ref|YP_513762.1| - 1.7e-33 115.8 0.0 2.6e-33 115.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|89256400|ref|YP_513762.1| - 4e-08 33.5 0.0 3.3e-05 23.9 0.0 2.1 1 1 0 1 1 1 1 AAA domain BCA_ABC_TP_C PF12399.3 gi|89256400|ref|YP_513762.1| - 1.1e-07 31.2 0.0 2.1e-07 30.4 0.0 1.5 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter MobB PF03205.9 gi|89256400|ref|YP_513762.1| - 0.0038 16.9 0.8 0.43 10.2 0.0 2.4 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B SMC_N PF02463.14 gi|89256400|ref|YP_513762.1| - 0.0068 15.6 0.5 0.061 12.5 0.3 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.1 gi|89256400|ref|YP_513762.1| - 0.027 14.3 0.2 0.45 10.4 0.0 2.7 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.1 gi|89256400|ref|YP_513762.1| - 0.038 13.5 0.1 0.067 12.7 0.1 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|89256400|ref|YP_513762.1| - 0.12 12.7 3.5 0.49 10.6 2.5 1.7 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|89256400|ref|YP_513762.1| - 0.12 11.7 0.1 0.28 10.5 0.0 1.7 2 0 0 2 2 2 0 AAA domain FAA_hydrolase PF01557.13 gi|89256401|ref|YP_513763.1| - 3.1e-28 98.7 0.0 4e-28 98.3 0.0 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family DUF2848 PF11010.3 gi|89256401|ref|YP_513763.1| - 0.0007 19.1 0.0 0.0018 17.8 0.0 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF2848) Abhydrolase_3 PF07859.8 gi|89256402|ref|YP_513764.1| - 8.2e-58 195.4 0.0 1.2e-57 194.9 0.0 1.2 1 0 0 1 1 1 1 alpha/beta hydrolase fold PNP_UDP_1 PF01048.15 gi|89256402|ref|YP_513764.1| - 1.2e-19 70.2 0.0 2.1e-19 69.4 0.0 1.3 1 0 0 1 1 1 1 Phosphorylase superfamily COesterase PF00135.23 gi|89256402|ref|YP_513764.1| - 5.3e-07 28.7 0.0 9.7e-07 27.8 0.0 1.3 1 0 0 1 1 1 1 Carboxylesterase family DUF2424 PF10340.4 gi|89256402|ref|YP_513764.1| - 0.0002 20.1 0.1 0.00034 19.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2424) Abhydrolase_5 PF12695.2 gi|89256402|ref|YP_513764.1| - 0.01 15.5 0.0 0.038 13.7 0.0 1.9 2 0 0 2 2 2 0 Alpha/beta hydrolase family LSM PF01423.17 gi|89256402|ref|YP_513764.1| - 0.11 12.0 0.0 0.25 10.9 0.0 1.5 1 0 0 1 1 1 0 LSM domain PseudoU_synth_1 PF01416.15 gi|89256403|ref|YP_513765.1| - 1.9e-35 121.4 0.1 2.2e-20 73.0 0.0 2.1 2 0 0 2 2 2 2 tRNA pseudouridine synthase Acid_PPase PF12689.2 gi|89256403|ref|YP_513765.1| - 0.011 15.3 0.3 0.32 10.6 0.0 2.1 1 1 0 2 2 2 0 Acid Phosphatase DUF2344 PF10105.4 gi|89256403|ref|YP_513765.1| - 0.084 12.3 0.0 0.12 11.8 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2344) HMGL-like PF00682.14 gi|89256403|ref|YP_513765.1| - 0.085 12.5 0.0 0.23 11.0 0.0 1.6 2 0 0 2 2 2 0 HMGL-like AA_permease_2 PF13520.1 gi|89256404|ref|YP_513766.1| - 5.5e-31 107.5 56.1 6.7e-31 107.2 38.9 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|89256404|ref|YP_513766.1| - 8.2e-23 80.4 48.4 1e-22 80.1 33.5 1.0 1 0 0 1 1 1 1 Amino acid permease SecY PF00344.15 gi|89256405|ref|YP_513767.1| - 0.011 14.7 1.2 0.011 14.6 0.8 1.1 1 0 0 1 1 1 0 SecY translocase YbhQ PF11076.3 gi|89256405|ref|YP_513767.1| - 0.11 12.0 0.7 0.15 11.6 0.5 1.3 1 1 0 1 1 1 0 Putative inner membrane protein YbhQ DUF3342 PF11822.3 gi|89256405|ref|YP_513767.1| - 0.26 10.3 1.6 0.3 10.1 1.1 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF3342) GATase PF00117.23 gi|89256406|ref|YP_513768.1| - 9.6e-42 142.6 0.6 1.6e-41 141.9 0.4 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GMP_synt_C PF00958.17 gi|89256406|ref|YP_513768.1| - 2.8e-40 135.9 0.4 1.6e-39 133.4 0.0 2.4 3 0 0 3 3 3 1 GMP synthase C terminal domain NAD_synthase PF02540.12 gi|89256406|ref|YP_513768.1| - 6.7e-12 44.8 0.2 2e-09 36.6 0.1 2.5 2 0 0 2 2 2 2 NAD synthase Peptidase_C26 PF07722.8 gi|89256406|ref|YP_513768.1| - 6.9e-11 41.9 2.7 3e-10 39.9 1.2 2.4 1 1 1 2 2 2 1 Peptidase C26 Asn_synthase PF00733.16 gi|89256406|ref|YP_513768.1| - 2.8e-05 23.7 0.0 6.3e-05 22.5 0.0 1.5 1 0 0 1 1 1 1 Asparagine synthase tRNA_Me_trans PF03054.11 gi|89256406|ref|YP_513768.1| - 3.6e-05 22.4 0.5 0.0001 20.9 0.0 2.0 3 0 0 3 3 3 1 tRNA methyl transferase QueC PF06508.8 gi|89256406|ref|YP_513768.1| - 0.0005 19.4 0.0 0.011 15.0 0.0 2.3 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC PAPS_reduct PF01507.14 gi|89256406|ref|YP_513768.1| - 0.0042 16.9 0.0 0.08 12.7 0.0 2.7 2 1 0 2 2 2 1 Phosphoadenosine phosphosulfate reductase family Arginosuc_synth PF00764.14 gi|89256406|ref|YP_513768.1| - 0.0079 15.2 0.1 0.13 11.2 0.0 2.2 2 0 0 2 2 2 1 Arginosuccinate synthase ATP_bind_3 PF01171.15 gi|89256406|ref|YP_513768.1| - 0.014 14.8 0.0 0.03 13.8 0.0 1.6 1 0 0 1 1 1 0 PP-loop family DUF4065 PF13274.1 gi|89256406|ref|YP_513768.1| - 0.073 13.7 0.4 12 6.6 0.0 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF4065) DXP_synthase_N PF13292.1 gi|89256407|ref|YP_513769.1| - 2.7e-116 387.2 0.1 4.6e-116 386.4 0.0 1.4 2 0 0 2 2 2 1 1-deoxy-D-xylulose-5-phosphate synthase Transket_pyr PF02779.19 gi|89256407|ref|YP_513769.1| - 9.2e-39 132.7 0.0 1.7e-38 131.8 0.0 1.4 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.15 gi|89256407|ref|YP_513769.1| - 4.9e-22 78.1 0.0 2.1e-21 76.1 0.0 2.2 3 0 0 3 3 3 1 Transketolase, C-terminal domain TPP_enzyme_C PF02775.16 gi|89256407|ref|YP_513769.1| - 4.3e-06 26.3 0.1 6.6e-05 22.5 0.1 2.4 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E1_dh PF00676.15 gi|89256407|ref|YP_513769.1| - 8.6e-06 24.6 0.1 1.4e-05 23.9 0.1 1.2 1 0 0 1 1 1 1 Dehydrogenase E1 component Transketolase_N PF00456.16 gi|89256407|ref|YP_513769.1| - 1e-05 24.5 1.0 0.0019 17.0 0.7 2.5 2 1 0 2 2 2 2 Transketolase, thiamine diphosphate binding domain Pectinesterase PF01095.14 gi|89256407|ref|YP_513769.1| - 0.12 10.9 0.5 0.65 8.5 0.1 2.0 2 0 0 2 2 2 0 Pectinesterase AIG2 PF06094.7 gi|89256408|ref|YP_513770.1| - 2.6e-14 53.5 0.1 3e-14 53.3 0.0 1.0 1 0 0 1 1 1 1 AIG2-like family Lipase_GDSL_2 PF13472.1 gi|89256409|ref|YP_513771.1| - 1.1e-26 94.0 0.0 1.4e-26 93.7 0.0 1.1 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family Lipase_GDSL PF00657.17 gi|89256409|ref|YP_513771.1| - 8.7e-22 78.0 0.5 2.3e-21 76.6 0.3 1.7 1 1 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase Lipase_GDSL_3 PF14606.1 gi|89256409|ref|YP_513771.1| - 2.2e-08 34.0 0.2 2.5e-05 24.0 0.0 2.1 1 1 0 2 2 2 2 GDSL-like Lipase/Acylhydrolase family CBS PF00571.23 gi|89256410|ref|YP_513772.1| - 1.5e-09 37.5 0.5 0.00041 20.0 0.1 2.3 2 0 0 2 2 2 2 CBS domain adh_short_C2 PF13561.1 gi|89256411|ref|YP_513773.1| - 1.5e-21 77.3 0.0 1.8e-21 77.0 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|89256411|ref|YP_513773.1| - 2.4e-18 66.5 0.0 5e-18 65.5 0.0 1.5 1 1 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|89256411|ref|YP_513773.1| - 1.5e-06 28.0 0.0 2.7e-05 23.9 0.0 2.3 1 1 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|89256411|ref|YP_513773.1| - 2.1e-06 27.3 0.1 3.2e-06 26.7 0.1 1.5 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|89256411|ref|YP_513773.1| - 1.9e-05 23.5 0.5 2.5e-05 23.1 0.4 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.1 gi|89256411|ref|YP_513773.1| - 0.008 16.2 0.0 0.013 15.5 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding Eno-Rase_NADH_b PF12242.3 gi|89256411|ref|YP_513773.1| - 0.11 12.2 0.1 1 9.1 0.0 2.3 3 0 0 3 3 3 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase RuvB_N PF05496.7 gi|89256412|ref|YP_513774.1| - 1.6e-118 393.9 0.3 1.9e-118 393.6 0.2 1.1 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus RuvB_C PF05491.8 gi|89256412|ref|YP_513774.1| - 3.4e-33 113.0 0.0 6.5e-33 112.1 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB C-terminus AAA PF00004.24 gi|89256412|ref|YP_513774.1| - 4.3e-18 65.7 0.1 1.1e-17 64.5 0.0 1.7 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|89256412|ref|YP_513774.1| - 1.9e-07 30.8 0.1 0.00095 18.9 0.0 2.5 1 1 1 2 2 2 2 AAA domain (dynein-related subfamily) AAA_22 PF13401.1 gi|89256412|ref|YP_513774.1| - 3.2e-05 24.0 0.5 0.043 13.9 0.0 2.7 2 1 1 3 3 3 2 AAA domain AAA_17 PF13207.1 gi|89256412|ref|YP_513774.1| - 0.00022 22.0 0.0 0.00063 20.5 0.0 2.0 1 1 0 1 1 1 1 AAA domain Sigma54_activat PF00158.21 gi|89256412|ref|YP_513774.1| - 0.00049 19.6 0.0 0.71 9.3 0.0 2.3 1 1 0 2 2 2 2 Sigma-54 interaction domain AAA_3 PF07726.6 gi|89256412|ref|YP_513774.1| - 0.00083 18.9 0.0 0.34 10.5 0.0 2.4 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Bac_DnaA PF00308.13 gi|89256412|ref|YP_513774.1| - 0.00083 19.0 0.3 0.38 10.3 0.0 2.9 2 1 0 2 2 2 1 Bacterial dnaA protein AAA_14 PF13173.1 gi|89256412|ref|YP_513774.1| - 0.00084 19.2 0.0 0.0017 18.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain TIP49 PF06068.8 gi|89256412|ref|YP_513774.1| - 0.00094 17.9 0.7 0.017 13.8 0.0 2.5 2 1 0 2 2 2 1 TIP49 C-terminus Mg_chelatase PF01078.16 gi|89256412|ref|YP_513774.1| - 0.0022 17.1 0.1 0.71 9.0 0.0 2.4 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_18 PF13238.1 gi|89256412|ref|YP_513774.1| - 0.0045 17.2 0.0 0.015 15.6 0.0 1.9 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|89256412|ref|YP_513774.1| - 0.0052 16.2 0.1 0.032 13.6 0.0 2.2 3 0 0 3 3 3 1 AAA-like domain RNA_helicase PF00910.17 gi|89256412|ref|YP_513774.1| - 0.0079 16.3 0.0 0.028 14.5 0.0 1.9 2 0 0 2 2 2 1 RNA helicase Rad17 PF03215.10 gi|89256412|ref|YP_513774.1| - 0.0086 14.8 0.0 0.012 14.2 0.0 1.1 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein T2SE PF00437.15 gi|89256412|ref|YP_513774.1| - 0.014 14.3 0.0 0.032 13.1 0.0 1.6 2 0 0 2 2 2 0 Type II/IV secretion system protein ResIII PF04851.10 gi|89256412|ref|YP_513774.1| - 0.019 14.8 0.3 0.95 9.2 0.1 2.2 1 1 1 2 2 2 0 Type III restriction enzyme, res subunit DUF815 PF05673.8 gi|89256412|ref|YP_513774.1| - 0.021 13.7 0.0 0.58 9.0 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF815) AAA_19 PF13245.1 gi|89256412|ref|YP_513774.1| - 0.022 14.5 0.0 0.073 12.8 0.0 1.9 2 0 0 2 2 1 0 Part of AAA domain AAA_24 PF13479.1 gi|89256412|ref|YP_513774.1| - 0.029 13.9 0.3 0.097 12.2 0.2 1.8 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|89256412|ref|YP_513774.1| - 0.035 13.8 0.5 1.1 8.9 0.0 2.3 1 1 1 2 2 2 0 NTPase AAA_2 PF07724.9 gi|89256412|ref|YP_513774.1| - 0.039 13.8 0.1 2.3 8.0 0.1 2.9 2 1 0 2 2 2 0 AAA domain (Cdc48 subfamily) ABC_tran PF00005.22 gi|89256412|ref|YP_513774.1| - 0.045 14.0 0.0 0.14 12.4 0.0 1.8 2 0 0 2 2 2 0 ABC transporter AAA_13 PF13166.1 gi|89256412|ref|YP_513774.1| - 0.05 12.0 0.0 0.063 11.7 0.0 1.1 1 0 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|89256412|ref|YP_513774.1| - 0.072 12.2 0.0 0.12 11.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_11 PF13086.1 gi|89256412|ref|YP_513774.1| - 0.073 12.6 0.0 0.12 11.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain Sigma54_activ_2 PF14532.1 gi|89256412|ref|YP_513774.1| - 0.12 12.3 0.0 0.24 11.4 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain PEPCK_ATP PF01293.15 gi|89256412|ref|YP_513774.1| - 0.14 10.7 0.0 0.2 10.1 0.0 1.1 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxykinase AAA_25 PF13481.1 gi|89256412|ref|YP_513774.1| - 0.14 11.5 0.0 0.52 9.6 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|89256412|ref|YP_513774.1| - 0.15 12.0 0.0 0.29 11.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|89256412|ref|YP_513774.1| - 0.15 11.9 0.0 0.48 10.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain HTH_26 PF13443.1 gi|89256413|ref|YP_513775.1| - 6.9e-22 77.4 0.3 7.6e-22 77.2 0.2 1.0 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_3 PF01381.17 gi|89256413|ref|YP_513775.1| - 1e-05 25.2 0.1 1.2e-05 25.0 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|89256413|ref|YP_513775.1| - 1.2e-05 25.2 0.2 1.5e-05 24.9 0.1 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|89256413|ref|YP_513775.1| - 2e-05 24.3 0.2 2.1e-05 24.2 0.2 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_10 PF04967.7 gi|89256413|ref|YP_513775.1| - 0.026 14.1 0.1 0.047 13.2 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain HTH_31 PF13560.1 gi|89256413|ref|YP_513775.1| - 0.067 13.3 0.0 0.079 13.1 0.0 1.1 1 0 0 1 1 1 0 Helix-turn-helix domain CENP-B_N PF04218.8 gi|89256413|ref|YP_513775.1| - 0.13 11.6 0.4 0.3 10.5 0.2 1.7 1 1 1 2 2 2 0 CENP-B N-terminal DNA-binding domain DUF2975 PF11188.3 gi|89256414|ref|YP_513776.1| - 0.042 13.5 11.1 0.21 11.3 7.7 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF2975) Yip1 PF04893.12 gi|89256414|ref|YP_513776.1| - 0.084 12.3 5.0 0.11 12.0 3.5 1.2 1 0 0 1 1 1 0 Yip1 domain zf-DHHC PF01529.15 gi|89256414|ref|YP_513776.1| - 0.64 9.3 4.2 1.1 8.6 2.9 1.5 1 1 0 1 1 1 0 DHHC palmitoyltransferase DUF3671 PF12420.3 gi|89256414|ref|YP_513776.1| - 1.1 9.3 7.0 1.9 8.5 4.8 1.4 1 0 0 1 1 1 0 Protein of unknown function CcoS PF03597.10 gi|89256414|ref|YP_513776.1| - 3.3 7.2 9.4 5.5 6.5 2.8 2.5 2 0 0 2 2 2 0 Cytochrome oxidase maturation protein cbb3-type Asp_protease_2 PF13650.1 gi|89256415|ref|YP_513777.1| - 6.7e-10 39.3 0.1 0.00022 21.6 0.0 2.6 3 0 0 3 3 3 2 Aspartyl protease RVP PF00077.15 gi|89256415|ref|YP_513777.1| - 0.00041 20.2 0.2 0.2 11.6 0.0 2.5 2 1 0 2 2 2 2 Retroviral aspartyl protease Asp_protease_2 PF13650.1 gi|89256416|ref|YP_513778.1| - 6e-05 23.4 0.0 8.4e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 Aspartyl protease MFS_2 PF13347.1 gi|89256417|ref|YP_513779.1| - 0.00057 18.4 0.6 0.00072 18.0 0.4 1.1 1 0 0 1 1 1 1 MFS/sugar transport protein 7TMR-DISM_7TM PF07695.6 gi|89256418|ref|YP_513780.1| - 0.02 14.5 7.8 0.02 14.5 5.4 1.9 2 0 0 2 2 2 0 7TM diverse intracellular signalling PRA1 PF03208.14 gi|89256418|ref|YP_513780.1| - 0.14 11.4 7.3 0.17 11.2 5.1 1.2 1 0 0 1 1 1 0 PRA1 family protein ABC2_membrane PF01061.19 gi|89256418|ref|YP_513780.1| - 0.46 9.6 17.3 0.93 8.6 12.0 1.5 1 1 0 1 1 1 0 ABC-2 type transporter TcpE PF12648.2 gi|89256418|ref|YP_513780.1| - 0.85 9.8 6.7 0.38 10.9 2.9 1.6 1 1 1 2 2 2 0 TcpE family VP7 PF00434.13 gi|89256418|ref|YP_513780.1| - 1.1 8.0 5.0 1.3 7.8 3.4 1.1 1 0 0 1 1 1 0 Glycoprotein VP7 DUF4191 PF13829.1 gi|89256418|ref|YP_513780.1| - 1.3 8.0 3.6 2.1 7.4 2.5 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) 2TM PF13239.1 gi|89256418|ref|YP_513780.1| - 1.4 8.9 6.7 1 9.4 2.2 2.0 2 0 0 2 2 2 0 2TM domain DUF443 PF04276.7 gi|89256418|ref|YP_513780.1| - 1.8 7.9 14.3 1.8 7.9 6.3 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF443) Wzy_C PF04932.10 gi|89256418|ref|YP_513780.1| - 1.9 8.2 13.5 3.9 7.2 9.4 1.7 1 1 0 1 1 1 0 O-Antigen ligase SPC12 PF06645.8 gi|89256418|ref|YP_513780.1| - 2 8.2 4.3 0.61 9.9 1.1 1.7 2 0 0 2 2 2 0 Microsomal signal peptidase 12 kDa subunit (SPC12) CoA_binding_3 PF13727.1 gi|89256418|ref|YP_513780.1| - 2.1 8.1 8.6 0.12 12.2 2.5 1.4 2 0 0 2 2 2 0 CoA-binding domain FUSC_2 PF13515.1 gi|89256418|ref|YP_513780.1| - 3.7 7.4 11.2 9.7 6.1 7.2 1.9 1 1 0 1 1 1 0 Fusaric acid resistance protein-like DUF2254 PF10011.4 gi|89256418|ref|YP_513780.1| - 5.2 5.4 16.1 0.4 9.0 6.3 1.9 1 1 1 2 2 2 0 Predicted membrane protein (DUF2254) DUF1656 PF07869.7 gi|89256418|ref|YP_513780.1| - 5.3 6.9 15.7 0.19 11.5 1.5 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF1656) DUF4131 PF13567.1 gi|89256418|ref|YP_513780.1| - 6.2 6.1 7.9 0.59 9.5 2.5 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) DUF1673 PF07895.6 gi|89256418|ref|YP_513780.1| - 7.6 6.0 11.4 8.4 5.8 7.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1673) DUF2207 PF09972.4 gi|89256418|ref|YP_513780.1| - 9.5 4.6 11.8 11 4.4 8.1 1.2 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) MFS_2 PF13347.1 gi|89256419|ref|YP_513781.1| - 1.7e-06 26.6 5.1 2e-06 26.5 3.5 1.0 1 0 0 1 1 1 1 MFS/sugar transport protein DUF1270 PF06900.6 gi|89256419|ref|YP_513781.1| - 1.1 9.4 5.5 0.21 11.7 1.3 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1270) PRA1 PF03208.14 gi|89256419|ref|YP_513781.1| - 3.9 6.8 6.2 0.17 11.2 0.4 1.6 2 0 0 2 2 2 0 PRA1 family protein PTR2 PF00854.16 gi|89256420|ref|YP_513782.1| - 7.8e-14 51.2 14.1 1.2e-13 50.6 9.8 1.4 1 1 0 1 1 1 1 POT family MFS_1 PF07690.11 gi|89256420|ref|YP_513782.1| - 2.9e-05 22.9 5.0 2.9e-05 22.9 3.4 2.0 1 1 1 2 2 2 1 Major Facilitator Superfamily RELT PF12606.3 gi|89256420|ref|YP_513782.1| - 0.77 8.9 3.7 2.9 7.1 2.6 2.0 1 0 0 1 1 1 0 Tumour necrosis factor receptor superfamily member 19 DUF4181 PF13789.1 gi|89256420|ref|YP_513782.1| - 2.3 8.1 10.2 0.06 13.2 0.8 2.4 3 0 0 3 3 3 0 Domain of unknown function (DUF4181) DDE_Tnp_1_2 PF13586.1 gi|89256421|ref|YP_513783.1| - 4.4e-16 58.8 0.1 1.3e-15 57.3 0.1 1.8 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|89256421|ref|YP_513783.1| - 2.5e-13 50.0 1.1 8.5e-13 48.3 0.7 1.7 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|89256421|ref|YP_513783.1| - 2.1e-09 37.2 0.1 2.9e-09 36.8 0.1 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF4096 PF13340.1 gi|89256421|ref|YP_513783.1| - 0.00058 19.6 0.0 0.0012 18.7 0.0 1.5 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) Protamine_P2 PF00841.14 gi|89256422|ref|YP_513784.1| - 0.98 10.0 4.2 1.4 9.5 2.9 1.3 1 0 0 1 1 1 0 Sperm histone P2 CBAH PF02275.13 gi|89256423|ref|YP_513785.1| - 2.6e-36 125.6 0.9 4.4e-36 124.9 0.6 1.4 1 1 0 1 1 1 1 Linear amide C-N hydrolases, choloylglycine hydrolase family AAT PF03417.11 gi|89256423|ref|YP_513785.1| - 8.3e-06 25.4 0.0 1.1e-05 25.0 0.0 1.2 1 0 0 1 1 1 1 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase SpoU_methylase PF00588.14 gi|89256424|ref|YP_513786.1| - 2.3e-30 105.3 0.1 9.1e-30 103.3 0.0 1.8 2 0 0 2 2 2 1 SpoU rRNA Methylase family SpoU_sub_bind PF08032.7 gi|89256424|ref|YP_513786.1| - 1.8e-07 31.2 0.1 2.9e-06 27.3 0.0 2.7 2 1 0 2 2 2 1 RNA 2'-O ribose methyltransferase substrate binding PMSR PF01625.16 gi|89256425|ref|YP_513787.1| - 4.6e-55 185.7 2.6 6e-55 185.3 1.8 1.1 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase SelR PF01641.13 gi|89256425|ref|YP_513787.1| - 3.9e-38 129.9 0.1 8.5e-38 128.8 0.0 1.5 2 0 0 2 2 2 1 SelR domain Ribosomal_L37e PF01907.14 gi|89256425|ref|YP_513787.1| - 0.018 14.8 1.1 0.035 13.8 0.1 2.0 2 0 0 2 2 2 0 Ribosomal protein L37e GFA PF04828.9 gi|89256425|ref|YP_513787.1| - 0.022 14.6 1.6 0.34 10.8 0.1 3.0 2 1 1 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme Auto_anti-p27 PF06677.7 gi|89256425|ref|YP_513787.1| - 0.04 13.6 1.8 0.069 12.9 0.1 2.3 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DUF1829 PF08862.5 gi|89256425|ref|YP_513787.1| - 0.055 13.7 0.1 0.44 10.8 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function DUF1829 TF_Zn_Ribbon PF08271.7 gi|89256425|ref|YP_513787.1| - 0.11 11.8 0.8 21 4.5 0.0 2.8 2 0 0 2 2 2 0 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|89256425|ref|YP_513787.1| - 0.39 10.0 2.7 1.5 8.1 0.1 3.0 3 0 0 3 3 3 0 zinc-ribbon domain DZR PF12773.2 gi|89256425|ref|YP_513787.1| - 0.42 10.4 5.1 0.48 10.2 1.2 2.6 2 1 0 2 2 2 0 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|89256425|ref|YP_513787.1| - 1.2 8.6 5.5 1.6 8.2 0.1 3.0 3 0 0 3 3 3 0 zinc-ribbon domain Thioredoxin_4 PF13462.1 gi|89256426|ref|YP_513788.1| - 2.4e-13 50.4 0.3 2.4e-13 50.4 0.2 2.3 2 1 1 3 3 3 1 Thioredoxin FKBP_N PF01346.13 gi|89256426|ref|YP_513788.1| - 1.3e-12 47.8 0.4 1.3e-12 47.8 0.3 2.6 3 0 0 3 3 3 1 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase DSBA PF01323.15 gi|89256426|ref|YP_513788.1| - 1.6e-11 44.1 5.9 1.2e-10 41.2 2.4 2.5 2 1 0 2 2 2 1 DSBA-like thioredoxin domain Thioredoxin_2 PF13098.1 gi|89256426|ref|YP_513788.1| - 1.4e-06 28.4 1.3 7.1e-06 26.1 0.9 2.2 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin PF00085.15 gi|89256426|ref|YP_513788.1| - 7.6e-05 22.3 0.2 0.00099 18.7 0.0 2.5 2 1 0 2 2 2 1 Thioredoxin Thioredoxin_8 PF13905.1 gi|89256426|ref|YP_513788.1| - 0.11 12.6 0.5 0.37 10.9 0.1 2.1 2 0 0 2 2 2 0 Thioredoxin-like FKBP_N PF01346.13 gi|89256427|ref|YP_513789.1| - 9.1e-17 61.2 3.9 1.1e-16 61.0 2.7 1.0 1 0 0 1 1 1 1 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase Oligomerisation PF02410.10 gi|89256428|ref|YP_513790.1| - 7.1e-31 106.2 1.5 9.1e-31 105.8 1.0 1.2 1 0 0 1 1 1 1 Oligomerisation domain DUF1598 PF07643.6 gi|89256428|ref|YP_513790.1| - 0.00063 19.7 0.0 0.00096 19.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1598) Sulfate_transp PF00916.15 gi|89256428|ref|YP_513790.1| - 0.29 10.0 3.2 0.48 9.3 0.5 1.9 2 0 0 2 2 2 0 Sulfate transporter family ABC2_membrane_5 PF13346.1 gi|89256429|ref|YP_513791.1| - 0.016 14.4 17.8 0.019 14.2 12.3 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein Scs3p PF10261.4 gi|89256429|ref|YP_513791.1| - 0.38 9.7 4.9 0.61 9.0 3.4 1.3 1 0 0 1 1 1 0 Inositol phospholipid synthesis and fat-storage-inducing TM DUF4418 PF14387.1 gi|89256429|ref|YP_513791.1| - 0.49 10.1 4.1 1.7 8.4 2.7 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4418) DUF4271 PF14093.1 gi|89256429|ref|YP_513791.1| - 1.3 8.6 19.9 1.9 8.1 13.1 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4271) Phtf-FEM1B_bdg PF12129.3 gi|89256429|ref|YP_513791.1| - 1.7 7.9 6.5 2 7.7 4.5 1.2 1 0 0 1 1 1 0 Male germ-cell putative homeodomain transcription factor ER_lumen_recept PF00810.13 gi|89256429|ref|YP_513791.1| - 1.7 9.0 9.6 2 8.9 6.7 1.1 1 0 0 1 1 1 0 ER lumen protein retaining receptor DUF3671 PF12420.3 gi|89256429|ref|YP_513791.1| - 5 7.1 17.3 0.29 11.1 7.3 2.0 1 1 1 2 2 2 0 Protein of unknown function HlyIII PF03006.15 gi|89256429|ref|YP_513791.1| - 5.1 6.4 11.9 6 6.2 8.2 1.0 1 0 0 1 1 1 0 Haemolysin-III related DUF3139 PF11337.3 gi|89256429|ref|YP_513791.1| - 6.1 7.2 13.7 0.95 9.7 2.4 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3139) PrgI PF12666.2 gi|89256429|ref|YP_513791.1| - 6.7 6.9 11.3 11 6.2 7.6 1.6 1 1 0 1 1 1 0 PrgI family protein DUF4131 PF13567.1 gi|89256429|ref|YP_513791.1| - 7.4 5.9 7.7 9 5.6 5.3 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) DUF3139 PF11337.3 gi|89256430|ref|YP_513792.1| - 4.6e-05 23.6 1.4 0.00011 22.3 1.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF3139) BNR PF02012.15 gi|89256430|ref|YP_513792.1| - 0.0023 17.4 0.5 0.011 15.4 0.3 2.3 1 0 0 1 1 1 1 BNR/Asp-box repeat 4HB_MCP_1 PF12729.2 gi|89256430|ref|YP_513792.1| - 0.0075 15.6 0.2 0.013 14.8 0.1 1.4 1 0 0 1 1 1 1 Four helix bundle sensory module for signal transduction DUF515 PF04415.7 gi|89256430|ref|YP_513792.1| - 0.022 13.0 0.4 0.023 12.9 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF515) Sigma_reg_N PF13800.1 gi|89256430|ref|YP_513792.1| - 0.049 13.6 0.2 0.084 12.9 0.2 1.4 1 0 0 1 1 1 0 Sigma factor regulator N-terminal DUF929 PF06053.6 gi|89256430|ref|YP_513792.1| - 0.081 11.9 1.6 0.075 12.1 0.4 1.4 2 0 0 2 2 2 0 Domain of unknown function (DUF929) BNR_2 PF13088.1 gi|89256430|ref|YP_513792.1| - 0.09 12.0 0.1 0.17 11.1 0.1 1.3 1 1 0 1 1 1 0 BNR repeat-like domain ETRAMP PF09716.5 gi|89256430|ref|YP_513792.1| - 0.26 11.2 2.2 0.51 10.3 1.5 1.5 1 0 0 1 1 1 0 Malarial early transcribed membrane protein (ETRAMP) tRNA-synt_2c PF01411.14 gi|89256431|ref|YP_513793.1| - 3.7e-222 738.5 0.6 5.7e-222 737.8 0.4 1.3 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.9 gi|89256431|ref|YP_513793.1| - 1.8e-19 69.3 0.4 6e-19 67.6 0.3 2.0 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain DHHA1 PF02272.14 gi|89256431|ref|YP_513793.1| - 1.7e-10 40.4 0.9 1.7e-10 40.4 0.7 2.3 2 0 0 2 2 2 1 DHHA1 domain PMT_C PF11647.3 gi|89256431|ref|YP_513793.1| - 0.073 12.6 0.8 0.42 10.2 0.0 2.6 3 0 0 3 3 3 0 C-terminal region of Pasteurella multocida toxin residues 569-1285 OEP PF02321.13 gi|89256432|ref|YP_513794.1| - 4.3e-43 147.0 18.7 2.4e-21 76.1 8.3 2.1 2 0 0 2 2 2 2 Outer membrane efflux protein Viral_cys_rich PF08008.7 gi|89256432|ref|YP_513794.1| - 0.13 11.8 0.8 1.1 8.8 0.0 2.7 3 0 0 3 3 3 0 Viral cysteine rich Peptidase_M17 PF00883.16 gi|89256433|ref|YP_513795.1| - 2.4e-86 289.4 0.0 3.1e-86 289.0 0.0 1.1 1 0 0 1 1 1 1 Cytosol aminopeptidase family, catalytic domain Peptidase_M17_N PF02789.12 gi|89256433|ref|YP_513795.1| - 0.03 14.0 0.1 0.07 12.8 0.1 1.6 1 0 0 1 1 1 0 Cytosol aminopeptidase family, N-terminal domain Spore_GerAC PF05504.6 gi|89256433|ref|YP_513795.1| - 0.075 12.8 0.1 0.23 11.2 0.1 1.8 1 1 0 1 1 1 0 Spore germination B3/ GerAC like, C-terminal Transaldolase PF00923.14 gi|161353781|ref|YP_513796.2| - 2.5e-94 315.6 5.2 2.8e-94 315.4 3.6 1.0 1 0 0 1 1 1 1 Transaldolase Coronavirus_5 PF05528.6 gi|161353781|ref|YP_513796.2| - 0.11 12.3 0.0 0.24 11.2 0.0 1.5 1 0 0 1 1 1 0 Coronavirus gene 5 protein Spidroin_MaSp PF11260.3 gi|161353781|ref|YP_513796.2| - 0.13 12.3 1.3 0.24 11.5 0.2 2.0 2 0 0 2 2 2 0 Major ampullate spidroin 1 and 2 Isochorismatase PF00857.15 gi|89256436|ref|YP_513798.1| - 5.8e-15 55.6 0.0 6.3e-15 55.5 0.0 1.1 1 0 0 1 1 1 1 Isochorismatase family DDE_Tnp_1_2 PF13586.1 gi|89256437|ref|YP_513799.1| - 6.6e-16 58.2 0.1 2e-15 56.7 0.1 1.9 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|89256437|ref|YP_513799.1| - 4.5e-13 49.2 1.0 1.5e-12 47.5 0.7 1.7 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|89256437|ref|YP_513799.1| - 3.1e-09 36.7 0.1 5e-09 36.0 0.1 1.3 1 0 0 1 1 1 1 Transposase DDE domain DUF4096 PF13340.1 gi|89256437|ref|YP_513799.1| - 0.00082 19.1 0.0 0.0016 18.2 0.0 1.5 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) NMN_transporter PF04973.7 gi|89256438|ref|YP_513800.1| - 6.3e-44 149.6 24.9 7.4e-44 149.3 17.3 1.0 1 0 0 1 1 1 1 Nicotinamide mononucleotide transporter RseC_MucC PF04246.7 gi|89256438|ref|YP_513800.1| - 6.8 6.2 7.6 3.3 7.2 1.2 2.6 3 0 0 3 3 3 0 Positive regulator of sigma(E), RseC/MucC Isochorismatase PF00857.15 gi|89256439|ref|YP_513801.1| - 6e-24 84.9 0.0 7.5e-24 84.6 0.0 1.1 1 0 0 1 1 1 1 Isochorismatase family PAZ PF02170.17 gi|89256439|ref|YP_513801.1| - 0.00047 19.4 0.9 0.0007 18.9 0.6 1.2 1 0 0 1 1 1 1 PAZ domain GCV_T PF01571.16 gi|89256440|ref|YP_513802.1| - 1.5e-17 63.6 0.0 2.2e-17 63.1 0.0 1.3 1 1 0 1 1 1 1 Aminomethyltransferase folate-binding domain UvrD_C PF13361.1 gi|89256441|ref|YP_513803.1| - 1.4e-81 274.6 15.1 1.4e-81 274.6 10.4 2.0 3 0 0 3 3 3 1 UvrD-like helicase C-terminal domain UvrD-helicase PF00580.16 gi|89256441|ref|YP_513803.1| - 3.2e-72 243.4 10.7 3.2e-72 243.4 7.4 3.2 2 2 0 2 2 2 1 UvrD/REP helicase N-terminal domain AAA_19 PF13245.1 gi|89256441|ref|YP_513803.1| - 3.3e-14 52.3 0.0 6.2e-14 51.4 0.0 1.4 1 0 0 1 1 1 1 Part of AAA domain UvrD_C_2 PF13538.1 gi|89256441|ref|YP_513803.1| - 2.7e-11 43.5 0.0 2.4e-10 40.4 0.0 2.5 2 1 0 2 2 2 1 UvrD-like helicase C-terminal domain Viral_helicase1 PF01443.13 gi|89256441|ref|YP_513803.1| - 1.8e-08 34.1 0.1 0.00054 19.5 0.0 3.4 3 0 0 3 3 3 2 Viral (Superfamily 1) RNA helicase AAA_30 PF13604.1 gi|89256441|ref|YP_513803.1| - 2.3e-07 30.5 0.0 2.3e-05 24.0 0.1 2.2 2 0 0 2 2 2 1 AAA domain AAA_11 PF13086.1 gi|89256441|ref|YP_513803.1| - 3.3e-05 23.5 0.0 0.00072 19.1 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_12 PF13087.1 gi|89256441|ref|YP_513803.1| - 0.0071 15.7 8.2 0.028 13.7 0.6 3.9 3 1 0 3 3 3 1 AAA domain DEAD PF00270.24 gi|89256441|ref|YP_513803.1| - 0.06 12.8 4.5 0.078 12.4 0.3 2.8 3 1 0 3 3 3 0 DEAD/DEAH box helicase AAA_14 PF13173.1 gi|89256441|ref|YP_513803.1| - 0.42 10.5 14.8 0.097 12.5 1.7 4.1 4 0 0 4 4 4 0 AAA domain S1_2 PF13509.1 gi|89256442|ref|YP_513804.1| - 1.5e-23 82.4 1.4 3.6e-16 58.8 0.1 2.6 3 0 0 3 3 3 2 S1 domain S1 PF00575.18 gi|89256442|ref|YP_513804.1| - 0.0023 18.0 0.1 0.12 12.4 0.0 3.3 3 1 0 3 3 3 1 S1 RNA binding domain DUF2582 PF10771.4 gi|89256442|ref|YP_513804.1| - 0.13 12.1 0.0 0.28 11.0 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2582) Rhodanese PF00581.15 gi|89256443|ref|YP_513805.1| - 1.2e-11 44.9 0.0 5.3e-11 42.8 0.0 2.1 2 0 0 2 2 2 1 Rhodanese-like domain BLUF PF04940.7 gi|89256443|ref|YP_513805.1| - 0.033 13.8 0.0 0.07 12.8 0.0 1.5 1 0 0 1 1 1 0 Sensors of blue-light using FAD RdgC PF04381.7 gi|89256444|ref|YP_513806.1| - 7.3e-76 255.0 2.7 8.1e-76 254.8 1.9 1.0 1 0 0 1 1 1 1 Putative exonuclease, RdgC DUF2850 PF11012.3 gi|89256446|ref|YP_513808.1| - 0.033 14.3 0.2 0.36 11.0 0.1 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF2850) DUF3313 PF11769.3 gi|89256447|ref|YP_513809.1| - 0.14 11.4 0.3 0.18 11.1 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3313) DUF1700 PF08006.6 gi|89256447|ref|YP_513809.1| - 1.8 7.8 17.0 2.6 7.2 11.8 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1700) Lipocalin_3 PF12702.2 gi|89256448|ref|YP_513810.1| - 0.092 12.7 0.1 0.22 11.5 0.1 1.6 1 0 0 1 1 1 0 Lipocalin-like Herpes_UL43 PF05072.8 gi|89256448|ref|YP_513810.1| - 0.11 11.2 2.4 0.16 10.7 1.7 1.1 1 0 0 1 1 1 0 Herpesvirus UL43 protein Phage_prot_Gp6 PF05133.9 gi|89256449|ref|YP_513811.1| - 0.051 12.1 0.0 0.074 11.6 0.0 1.3 1 0 0 1 1 1 0 Phage portal protein, SPP1 Gp6-like Couple_hipA PF13657.1 gi|89256450|ref|YP_513812.1| - 4.7e-25 87.7 0.0 8.5e-25 86.9 0.0 1.4 1 0 0 1 1 1 1 HipA N-terminal domain HipA_C PF07804.7 gi|89256450|ref|YP_513812.1| - 2.8e-21 75.4 0.0 9.3e-21 73.7 0.0 1.9 2 0 0 2 2 2 1 HipA-like C-terminal domain HipA_N PF07805.7 gi|89256450|ref|YP_513812.1| - 1e-19 70.4 0.0 1.8e-19 69.7 0.0 1.4 1 0 0 1 1 1 1 HipA-like N-terminal domain HTH_19 PF12844.2 gi|89256451|ref|YP_513813.1| - 1.4e-09 37.8 0.0 1.8e-09 37.5 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|89256451|ref|YP_513813.1| - 9.1e-09 35.0 0.1 1.2e-08 34.6 0.1 1.1 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|89256451|ref|YP_513813.1| - 1.4e-06 28.3 0.0 1.7e-06 28.1 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|89256451|ref|YP_513813.1| - 0.0019 17.7 0.0 0.0026 17.3 0.0 1.3 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|89256451|ref|YP_513813.1| - 0.11 12.3 0.0 0.14 12.0 0.0 1.1 1 0 0 1 1 1 0 Helix-turn-helix domain DDE_3 PF13358.1 gi|89256452|ref|YP_513814.1| - 1.7e-31 108.9 0.0 2.8e-31 108.2 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.11 gi|89256452|ref|YP_513814.1| - 1.5e-07 31.0 0.2 1.1e-06 28.3 0.1 2.1 2 0 0 2 2 2 1 Transposase DDE_1 PF03184.14 gi|89256452|ref|YP_513814.1| - 5.8e-07 28.8 0.1 9.5e-07 28.1 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_28 PF13518.1 gi|89256452|ref|YP_513814.1| - 0.00058 19.8 0.0 0.0018 18.2 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain rve PF00665.21 gi|89256452|ref|YP_513814.1| - 0.00072 19.6 0.0 0.0013 18.7 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.1 gi|89256452|ref|YP_513814.1| - 0.0087 15.6 0.0 0.029 14.0 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.1 gi|89256452|ref|YP_513814.1| - 0.02 15.0 0.0 0.032 14.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix DDE_Tnp_ISAZ013 PF07592.6 gi|89256452|ref|YP_513814.1| - 0.039 12.6 0.6 0.32 9.7 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain Acetyltransf_10 PF13673.1 gi|89256454|ref|YP_513816.1| - 5.8e-10 39.3 0.0 7.5e-10 38.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|89256454|ref|YP_513816.1| - 1.3e-05 25.2 0.1 2.5e-05 24.3 0.1 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|89256454|ref|YP_513816.1| - 2.5e-05 24.1 0.0 4.6e-05 23.3 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain GRASP55_65 PF04495.9 gi|89256454|ref|YP_513816.1| - 0.044 13.7 0.0 0.055 13.4 0.0 1.3 1 0 0 1 1 1 0 GRASP55/65 PDZ-like domain Nol1_Nop2_Fmu PF01189.12 gi|89256455|ref|YP_513817.1| - 2e-30 106.1 0.0 2.3e-30 105.9 0.0 1.0 1 0 0 1 1 1 1 NOL1/NOP2/sun family Lyase_8_C PF02884.12 gi|89256455|ref|YP_513817.1| - 0.036 14.0 0.1 0.055 13.4 0.1 1.3 1 0 0 1 1 1 0 Polysaccharide lyase family 8, C-terminal beta-sandwich domain Cu_amine_oxid PF01179.15 gi|89256455|ref|YP_513817.1| - 0.13 11.0 0.0 0.15 10.7 0.0 1.0 1 0 0 1 1 1 0 Copper amine oxidase, enzyme domain NusB PF01029.13 gi|89256456|ref|YP_513818.1| - 7.1e-16 58.4 3.5 9.2e-16 58.0 2.4 1.2 1 0 0 1 1 1 1 NusB family DUF4234 PF14018.1 gi|89256456|ref|YP_513818.1| - 0.086 12.5 0.5 0.13 12.0 0.4 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4234) PPP4R2 PF09184.6 gi|89256456|ref|YP_513818.1| - 0.096 12.2 0.3 1.3 8.4 0.0 2.0 2 0 0 2 2 2 0 PPP4R2 Plasmod_dom_1 PF09715.5 gi|89256456|ref|YP_513818.1| - 0.37 10.7 2.3 1.1 9.1 0.2 2.7 2 1 0 3 3 3 0 Plasmodium protein of unknown function (Plasmod_dom_1) Inositol_P PF00459.20 gi|89256457|ref|YP_513819.1| - 8.2e-60 202.3 0.0 9.1e-60 202.2 0.0 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.15 gi|89256457|ref|YP_513819.1| - 0.0025 16.6 0.0 0.0044 15.8 0.0 1.4 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase Cons_hypoth698 PF03601.9 gi|89256458|ref|YP_513820.1| - 3.2e-91 305.1 30.6 3.8e-91 304.9 21.2 1.0 1 0 0 1 1 1 1 Conserved hypothetical protein 698 MFS_1 PF07690.11 gi|89256459|ref|YP_513821.1| - 5.8e-18 64.7 49.0 5.8e-18 64.7 33.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily YCII PF03795.9 gi|89256460|ref|YP_513822.1| - 1.5e-05 25.1 0.0 1.6e-05 25.0 0.0 1.1 1 0 0 1 1 1 1 YCII-related domain ketoacyl-synt PF00109.21 gi|89256461|ref|YP_513823.1| - 8.9e-58 195.7 0.6 1.6e-57 194.9 0.3 1.5 2 0 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain Ketoacyl-synt_C PF02801.17 gi|89256461|ref|YP_513823.1| - 8.6e-36 122.3 0.6 1.6e-35 121.5 0.1 1.7 2 0 0 2 2 2 1 Beta-ketoacyl synthase, C-terminal domain ACP_syn_III PF08545.5 gi|89256461|ref|YP_513823.1| - 1.9e-06 27.4 2.0 0.0004 19.9 1.4 2.7 1 1 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Thiolase_N PF00108.18 gi|89256461|ref|YP_513823.1| - 0.00015 20.8 0.1 0.00029 19.8 0.0 1.4 1 0 0 1 1 1 1 Thiolase, N-terminal domain SpoVAD PF07451.6 gi|89256461|ref|YP_513823.1| - 0.034 12.5 0.5 0.14 10.5 0.3 1.9 1 1 0 1 1 1 0 Stage V sporulation protein AD (SpoVAD) PP-binding PF00550.20 gi|89256462|ref|YP_513824.1| - 2.7e-15 56.3 0.4 3.1e-15 56.1 0.3 1.1 1 0 0 1 1 1 1 Phosphopantetheine attachment site PP-binding_2 PF14573.1 gi|89256462|ref|YP_513824.1| - 2.2e-06 27.5 1.7 2.8e-06 27.2 1.1 1.3 1 1 0 1 1 1 1 Acyl-carrier Ribosomal_L50 PF10501.4 gi|89256462|ref|YP_513824.1| - 0.0053 16.6 0.0 0.0063 16.4 0.0 1.4 1 1 0 1 1 1 1 Ribosomal subunit 39S DUF1493 PF07377.7 gi|89256462|ref|YP_513824.1| - 0.048 13.7 0.2 0.069 13.2 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1493) adh_short PF00106.20 gi|89256463|ref|YP_513825.1| - 8.1e-36 123.4 0.4 1.7e-35 122.3 0.1 1.6 2 0 0 2 2 2 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|89256463|ref|YP_513825.1| - 1.8e-32 113.0 2.2 2.1e-32 112.7 1.5 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|89256463|ref|YP_513825.1| - 7.1e-19 68.1 0.2 1.1e-18 67.6 0.1 1.3 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|89256463|ref|YP_513825.1| - 0.00012 21.6 0.0 0.00017 21.1 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|89256463|ref|YP_513825.1| - 0.0095 15.9 0.4 0.023 14.7 0.3 1.7 1 1 0 1 1 1 1 NADH(P)-binding DUF3726 PF12525.3 gi|89256463|ref|YP_513825.1| - 0.035 13.9 0.8 0.18 11.6 0.2 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3726) RmlD_sub_bind PF04321.12 gi|89256463|ref|YP_513825.1| - 0.037 12.9 0.1 0.26 10.1 0.0 2.0 2 0 0 2 2 2 0 RmlD substrate binding domain Acyl_transf_1 PF00698.16 gi|89256464|ref|YP_513826.1| - 8e-38 130.5 0.0 9.2e-38 130.3 0.0 1.0 1 0 0 1 1 1 1 Acyl transferase domain Abhydrolase_5 PF12695.2 gi|89256464|ref|YP_513826.1| - 0.003 17.3 0.0 0.0034 17.1 0.0 1.3 1 1 0 1 1 1 1 Alpha/beta hydrolase family Lipase_3 PF01764.20 gi|89256464|ref|YP_513826.1| - 0.06 12.9 0.0 0.13 11.9 0.0 1.6 1 0 0 1 1 1 0 Lipase (class 3) ACP_syn_III_C PF08541.5 gi|89256465|ref|YP_513827.1| - 8.9e-37 124.9 0.3 5.4e-35 119.2 0.0 2.8 3 0 0 3 3 3 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ACP_syn_III PF08545.5 gi|89256465|ref|YP_513827.1| - 5.4e-34 115.7 1.2 8.2e-34 115.1 0.2 1.8 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III FAE1_CUT1_RppA PF08392.7 gi|89256465|ref|YP_513827.1| - 7.4e-12 44.9 0.2 1.4e-10 40.7 0.1 2.2 2 0 0 2 2 2 1 FAE1/Type III polyketide synthase-like protein Chal_sti_synt_N PF00195.14 gi|89256465|ref|YP_513827.1| - 1.4e-06 27.7 0.1 3.1e-06 26.5 0.1 1.7 1 0 0 1 1 1 1 Chalcone and stilbene synthases, N-terminal domain Thiolase_N PF00108.18 gi|89256465|ref|YP_513827.1| - 3.7e-05 22.8 0.5 8.8e-05 21.6 0.2 1.6 1 1 0 1 1 1 1 Thiolase, N-terminal domain SpoVAD PF07451.6 gi|89256465|ref|YP_513827.1| - 0.00048 18.6 2.7 0.00092 17.7 0.9 2.0 2 1 0 2 2 2 1 Stage V sporulation protein AD (SpoVAD) Thiolase_C PF02803.13 gi|89256465|ref|YP_513827.1| - 0.0033 16.8 0.1 0.71 9.3 0.0 2.5 2 0 0 2 2 2 1 Thiolase, C-terminal domain Chal_sti_synt_C PF02797.10 gi|89256465|ref|YP_513827.1| - 0.0051 16.7 0.0 0.01 15.7 0.0 1.5 1 0 0 1 1 1 1 Chalcone and stilbene synthases, C-terminal domain HMG_CoA_synt_N PF01154.12 gi|89256465|ref|YP_513827.1| - 0.0095 15.5 0.2 0.016 14.7 0.2 1.4 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal Peptidase_M22 PF00814.20 gi|89256465|ref|YP_513827.1| - 0.018 14.5 0.3 2 7.8 0.1 2.3 2 0 0 2 2 2 0 Glycoprotease family Hydrolase_6 PF13344.1 gi|89256465|ref|YP_513827.1| - 0.13 12.1 0.0 3.6 7.5 0.0 2.6 2 1 0 2 2 2 0 Haloacid dehalogenase-like hydrolase FA_synthesis PF02504.10 gi|89256466|ref|YP_513828.1| - 2.6e-98 328.8 5.3 3e-98 328.6 3.7 1.0 1 0 0 1 1 1 1 Fatty acid synthesis protein Ribosomal_L32p PF01783.18 gi|89256467|ref|YP_513829.1| - 3e-20 72.1 0.6 3.3e-20 72.0 0.4 1.0 1 0 0 1 1 1 1 Ribosomal L32p protein family DUF177 PF02620.12 gi|89256468|ref|YP_513830.1| - 2.4e-16 59.8 0.4 3.6e-16 59.2 0.3 1.3 1 0 0 1 1 1 1 Uncharacterized ACR, COG1399 Transketolase_N PF00456.16 gi|89256469|ref|YP_513831.1| - 1.2e-147 491.1 0.0 1.6e-147 490.6 0.0 1.2 1 0 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain Transket_pyr PF02779.19 gi|89256469|ref|YP_513831.1| - 6e-46 156.1 0.0 9.8e-46 155.4 0.0 1.3 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.15 gi|89256469|ref|YP_513831.1| - 5.7e-10 39.2 0.1 2.7e-09 37.0 0.0 2.2 3 0 0 3 3 3 1 Transketolase, C-terminal domain DXP_synthase_N PF13292.1 gi|89256469|ref|YP_513831.1| - 6.9e-06 25.1 0.0 0.0082 15.0 0.0 2.4 1 1 1 2 2 2 2 1-deoxy-D-xylulose-5-phosphate synthase E1_dh PF00676.15 gi|89256469|ref|YP_513831.1| - 0.00014 20.7 0.0 0.0014 17.4 0.0 2.1 2 0 0 2 2 2 1 Dehydrogenase E1 component DUF4506 PF14958.1 gi|89256469|ref|YP_513831.1| - 0.11 12.0 0.0 0.2 11.2 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4506) Alba PF01918.16 gi|89256469|ref|YP_513831.1| - 0.17 11.5 0.6 0.63 9.6 0.3 2.0 1 1 0 1 1 1 0 Alba Rpp20 PF12328.3 gi|89256469|ref|YP_513831.1| - 0.17 11.5 0.4 0.31 10.6 0.3 1.3 1 0 0 1 1 1 0 Rpp20 subunit of nuclear RNase MRP and P Gp_dh_C PF02800.15 gi|89256470|ref|YP_513832.1| - 6.3e-60 201.1 1.3 1.2e-59 200.3 0.4 1.8 2 0 0 2 2 2 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Gp_dh_N PF00044.19 gi|89256470|ref|YP_513832.1| - 1e-55 187.8 0.7 2.1e-55 186.8 0.1 1.8 3 0 0 3 3 3 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain PGK PF00162.14 gi|89256471|ref|YP_513833.1| - 9.1e-149 495.1 3.5 1e-148 495.0 2.4 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase PK PF00224.16 gi|89256472|ref|YP_513834.1| - 1.2e-124 415.4 11.8 1.6e-124 415.0 8.2 1.1 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.11 gi|89256472|ref|YP_513834.1| - 1.1e-24 86.2 0.4 4.4e-24 84.2 0.1 2.1 2 0 0 2 2 2 1 Pyruvate kinase, alpha/beta domain DUF3006 PF11213.3 gi|89256472|ref|YP_513834.1| - 0.018 14.8 0.2 0.088 12.5 0.1 2.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3006) F_bP_aldolase PF01116.15 gi|89256473|ref|YP_513835.1| - 1.4e-102 342.6 0.1 1.7e-102 342.3 0.1 1.1 1 0 0 1 1 1 1 Fructose-bisphosphate aldolase class-II Trehalase PF01204.13 gi|89256474|ref|YP_513836.1| - 1.8e-46 158.8 0.5 2.1e-46 158.6 0.4 1.0 1 0 0 1 1 1 1 Trehalase GDE_C PF06202.9 gi|89256474|ref|YP_513836.1| - 0.0011 17.7 0.3 0.0017 17.1 0.2 1.2 1 0 0 1 1 1 1 Amylo-alpha-1,6-glucosidase KGK PF08872.5 gi|89256474|ref|YP_513836.1| - 0.21 11.7 1.2 0.57 10.3 0.5 2.0 2 1 0 2 2 2 0 KGK domain Trehalase PF01204.13 gi|89256475|ref|YP_513837.1| - 3.6e-77 260.1 4.9 8.6e-77 258.9 3.4 1.5 1 1 0 1 1 1 1 Trehalase Thioredoxin_6 PF13848.1 gi|89256475|ref|YP_513837.1| - 0.0013 18.6 1.2 0.003 17.3 0.3 2.0 2 0 0 2 2 2 1 Thioredoxin-like domain DUF2660 PF10859.3 gi|89256475|ref|YP_513837.1| - 0.028 14.6 0.3 0.078 13.2 0.2 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF2660) Stn1 PF10451.4 gi|89256475|ref|YP_513837.1| - 0.031 13.1 0.1 0.062 12.1 0.1 1.4 1 0 0 1 1 1 0 Telomere regulation protein Stn1 DDE_3 PF13358.1 gi|89256476|ref|YP_513838.1| - 5.3e-31 107.3 0.0 9e-31 106.5 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.11 gi|89256476|ref|YP_513838.1| - 1.6e-07 31.0 0.2 1.1e-06 28.3 0.1 2.1 2 0 0 2 2 2 1 Transposase DDE_1 PF03184.14 gi|89256476|ref|YP_513838.1| - 6e-07 28.8 0.1 9.5e-07 28.1 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_28 PF13518.1 gi|89256476|ref|YP_513838.1| - 0.00058 19.8 0.0 0.0018 18.2 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain rve PF00665.21 gi|89256476|ref|YP_513838.1| - 0.00072 19.6 0.0 0.0013 18.7 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.1 gi|89256476|ref|YP_513838.1| - 0.0087 15.6 0.0 0.029 14.0 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.1 gi|89256476|ref|YP_513838.1| - 0.02 15.0 0.0 0.032 14.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix DDE_Tnp_ISAZ013 PF07592.6 gi|89256476|ref|YP_513838.1| - 0.041 12.6 0.7 0.32 9.7 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain CENP-B_N PF04218.8 gi|89256476|ref|YP_513838.1| - 0.069 12.5 0.0 0.7 9.3 0.0 2.5 3 0 0 3 3 3 0 CENP-B N-terminal DNA-binding domain DUF770 PF05591.7 gi|89256479|ref|YP_513841.1| - 3.1e-42 143.7 3.7 3.7e-42 143.5 2.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF770) DUF877 PF05943.7 gi|89256480|ref|YP_513842.1| - 2.5e-144 480.8 0.0 2.9e-144 480.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF877) IglC PF11550.3 gi|89256481|ref|YP_513843.1| - 1.1e-141 469.1 7.7 1.2e-141 469.0 5.3 1.0 1 0 0 1 1 1 1 Intracellular growth locus C protein DUF876 PF05936.7 gi|89256482|ref|YP_513844.1| - 0.00095 17.7 0.2 0.39 9.1 0.0 2.2 1 1 0 2 2 2 2 Bacterial protein of unknown function (DUF876) DUF2304 PF10066.4 gi|89256485|ref|YP_513847.1| - 1.9 8.3 9.5 5 7.0 0.3 2.6 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2304) DUF2077 PF09850.4 gi|89256487|ref|YP_513849.1| - 3.3e-10 39.7 0.0 3.8e-10 39.5 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2077) DUF4280 PF14107.1 gi|89256489|ref|YP_513851.1| - 1.1e-16 61.0 0.1 1.9e-16 60.3 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4280) DUF2345 PF10106.4 gi|89256491|ref|YP_513853.1| - 0.0056 16.2 12.1 0.36 10.4 1.0 3.0 1 1 2 3 3 3 3 Uncharacterized protein conserved in bacteria (DUF2345) DUF2807 PF10988.3 gi|89256491|ref|YP_513853.1| - 0.082 12.4 11.8 1.1 8.7 7.4 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF2807) DUF1499 PF07386.6 gi|89256491|ref|YP_513853.1| - 0.11 12.7 0.6 0.56 10.3 0.4 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF1499) DUF3540 PF12059.3 gi|89256491|ref|YP_513853.1| - 0.15 11.6 2.2 0.22 11.1 0.2 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3540) YbbR PF07949.7 gi|89256491|ref|YP_513853.1| - 0.99 9.5 5.1 0.57 10.3 1.4 2.0 1 1 0 2 2 2 0 YbbR-like protein Big_5 PF13205.1 gi|89256491|ref|YP_513853.1| - 2 9.0 6.9 0.78 10.3 1.6 2.0 1 1 1 2 2 2 0 Bacterial Ig-like domain DUF3979 PF13141.1 gi|89256492|ref|YP_513854.1| - 0.037 13.9 0.4 0.11 12.4 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3979) Peptidase_C3 PF00548.15 gi|89256492|ref|YP_513854.1| - 0.049 13.4 0.1 0.056 13.2 0.1 1.0 1 0 0 1 1 1 0 3C cysteine protease (picornain 3C) DUF1215 PF06744.7 gi|89256493|ref|YP_513855.1| - 0.002 17.7 0.0 0.0057 16.2 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF1215) DsbB PF02600.11 gi|89256495|ref|YP_513857.1| - 1.9e-13 50.5 3.8 1.9e-13 50.5 2.6 2.9 2 1 1 3 3 3 1 Disulfide bond formation protein DsbB Tetraspannin PF00335.15 gi|89256495|ref|YP_513857.1| - 2.8 7.1 12.6 0.022 14.0 1.9 2.2 2 1 0 2 2 2 0 Tetraspanin family DUF4271 PF14093.1 gi|89256495|ref|YP_513857.1| - 3.9 7.1 18.2 13 5.4 8.7 2.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4271) PALP PF00291.20 gi|89256496|ref|YP_513858.1| - 1.1e-60 205.4 0.0 1.2e-60 205.2 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme HTH_1 PF00126.22 gi|89256497|ref|YP_513859.1| - 1.2e-15 56.9 0.0 1.7e-15 56.4 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family LysR_substrate PF03466.15 gi|89256497|ref|YP_513859.1| - 1.8e-07 30.4 0.0 2.6e-07 29.9 0.0 1.2 1 0 0 1 1 1 1 LysR substrate binding domain HTH_11 PF08279.7 gi|89256497|ref|YP_513859.1| - 3.6e-07 29.7 0.2 6e-07 29.0 0.1 1.3 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.1 gi|89256497|ref|YP_513859.1| - 1.5e-06 27.4 0.2 3e-06 26.5 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|89256497|ref|YP_513859.1| - 1.4e-05 24.4 0.0 1.4e-05 24.4 0.0 1.5 2 0 0 2 2 1 1 AsnC-type helix-turn-helix domain HTH_Tnp_4 PF13613.1 gi|89256497|ref|YP_513859.1| - 0.00026 20.4 0.0 0.0014 18.1 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix of DDE superfamily endonuclease MarR PF01047.17 gi|89256497|ref|YP_513859.1| - 0.00028 20.5 0.1 0.00052 19.6 0.1 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|89256497|ref|YP_513859.1| - 0.00031 20.3 0.1 0.00048 19.7 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_Tnp_ISL3 PF13542.1 gi|89256497|ref|YP_513859.1| - 0.00035 19.6 0.0 0.00062 18.8 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_IclR PF09339.5 gi|89256497|ref|YP_513859.1| - 0.00048 19.6 0.0 0.00077 18.9 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|89256497|ref|YP_513859.1| - 0.00058 19.6 0.3 0.002 17.9 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|89256497|ref|YP_513859.1| - 0.0014 18.2 0.0 0.0024 17.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_38 PF13936.1 gi|89256497|ref|YP_513859.1| - 0.0023 17.4 0.0 0.0044 16.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|89256497|ref|YP_513859.1| - 0.0033 16.6 0.0 0.0058 15.9 0.0 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 Fe_dep_repress PF01325.14 gi|89256497|ref|YP_513859.1| - 0.0038 17.1 0.1 0.0071 16.2 0.1 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_30 PF13556.1 gi|89256497|ref|YP_513859.1| - 0.005 16.4 0.0 0.0084 15.6 0.0 1.4 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain HTH_10 PF04967.7 gi|89256497|ref|YP_513859.1| - 0.0052 16.3 0.0 0.0091 15.5 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain Mga PF05043.8 gi|89256497|ref|YP_513859.1| - 0.006 16.8 0.3 0.015 15.5 0.1 1.7 2 0 0 2 2 1 1 Mga helix-turn-helix domain HTH_23 PF13384.1 gi|89256497|ref|YP_513859.1| - 0.0076 15.8 0.0 0.021 14.4 0.0 1.7 2 0 0 2 2 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|89256497|ref|YP_513859.1| - 0.0086 16.0 0.1 0.017 15.0 0.0 1.5 2 0 0 2 2 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|89256497|ref|YP_513859.1| - 0.0087 15.7 0.1 0.018 14.7 0.1 1.6 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.1 gi|89256497|ref|YP_513859.1| - 0.012 15.5 0.1 0.022 14.7 0.1 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain LacI PF00356.16 gi|89256497|ref|YP_513859.1| - 0.013 15.0 0.2 0.026 14.1 0.1 1.6 2 0 0 2 2 1 0 Bacterial regulatory proteins, lacI family HTH_26 PF13443.1 gi|89256497|ref|YP_513859.1| - 0.018 15.2 0.1 0.038 14.2 0.1 1.6 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain RE_LlaMI PF09562.5 gi|89256497|ref|YP_513859.1| - 0.018 14.1 0.1 0.027 13.6 0.0 1.2 1 0 0 1 1 1 0 LlaMI restriction endonuclease Phage_CI_repr PF07022.8 gi|89256497|ref|YP_513859.1| - 0.02 14.9 0.0 0.025 14.6 0.0 1.3 1 1 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain RepL PF05732.6 gi|89256497|ref|YP_513859.1| - 0.021 14.0 0.2 0.033 13.3 0.2 1.3 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_3 PF01381.17 gi|89256497|ref|YP_513859.1| - 0.028 14.2 0.1 0.052 13.3 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix HTH_45 PF14947.1 gi|89256497|ref|YP_513859.1| - 0.031 14.0 0.1 0.055 13.2 0.1 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_6 PF01418.12 gi|89256497|ref|YP_513859.1| - 0.037 13.7 0.0 0.07 12.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family DDRGK PF09756.4 gi|89256497|ref|YP_513859.1| - 0.042 13.2 0.5 0.08 12.3 0.1 1.5 1 1 1 2 2 2 0 DDRGK domain HTH_Crp_2 PF13545.1 gi|89256497|ref|YP_513859.1| - 0.043 13.6 0.2 0.078 12.7 0.1 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_27 PF13463.1 gi|89256497|ref|YP_513859.1| - 0.044 14.1 0.0 0.071 13.4 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain Mrr_N PF14338.1 gi|89256497|ref|YP_513859.1| - 0.045 13.8 0.1 0.11 12.5 0.1 1.7 1 1 0 1 1 1 0 Mrr N-terminal domain SpoIIID PF12116.3 gi|89256497|ref|YP_513859.1| - 0.057 13.3 0.6 0.14 12.1 0.1 1.7 2 0 0 2 2 2 0 Stage III sporulation protein D HTH_DeoR PF08220.7 gi|89256497|ref|YP_513859.1| - 0.061 12.8 0.1 0.12 11.8 0.1 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain P22_Cro PF14549.1 gi|89256497|ref|YP_513859.1| - 0.067 12.9 0.0 0.16 11.7 0.0 1.7 1 1 0 1 1 1 0 DNA-binding transcriptional regulator Cro HTH_17 PF12728.2 gi|89256497|ref|YP_513859.1| - 0.07 13.3 0.1 0.36 11.1 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain DUF2089 PF09862.4 gi|89256497|ref|YP_513859.1| - 0.071 12.8 0.2 0.14 11.9 0.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2089) HTH_36 PF13730.1 gi|89256497|ref|YP_513859.1| - 0.079 13.1 0.0 0.44 10.7 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_29 PF13551.1 gi|89256497|ref|YP_513859.1| - 0.12 12.5 0.0 0.2 11.8 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix HTH_Mga PF08280.6 gi|89256497|ref|YP_513859.1| - 0.12 12.1 0.2 0.5 10.1 0.1 2.0 2 0 0 2 2 2 0 M protein trans-acting positive regulator (MGA) HTH domain TrmE_N PF10396.4 gi|89256498|ref|YP_513860.1| - 5e-44 148.9 0.0 1.8e-43 147.1 0.0 2.0 2 0 0 2 2 1 1 GTP-binding protein TrmE N-terminus MMR_HSR1 PF01926.18 gi|89256498|ref|YP_513860.1| - 2.1e-22 79.2 0.4 5.6e-22 77.8 0.3 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTPase_Cys_C PF12631.2 gi|89256498|ref|YP_513860.1| - 2.5e-18 66.2 0.5 1.2e-17 64.0 0.3 2.3 1 0 0 1 1 1 1 Catalytic cysteine-containing C-terminus of GTPase, MnmE FeoB_N PF02421.13 gi|89256498|ref|YP_513860.1| - 3.1e-09 36.2 0.5 9.1e-09 34.7 0.1 1.9 2 0 0 2 2 2 1 Ferrous iron transport protein B Miro PF08477.8 gi|89256498|ref|YP_513860.1| - 1.6e-07 31.8 0.2 3.6e-07 30.6 0.1 1.6 1 0 0 1 1 1 1 Miro-like protein Dynamin_N PF00350.18 gi|89256498|ref|YP_513860.1| - 1.4e-06 28.2 0.9 3.7e-05 23.6 0.6 2.6 1 1 0 1 1 1 1 Dynamin family Ras PF00071.17 gi|89256498|ref|YP_513860.1| - 2.1e-06 27.2 0.4 9.3e-06 25.1 0.1 2.2 2 1 0 2 2 2 1 Ras family AIG1 PF04548.11 gi|89256498|ref|YP_513860.1| - 2.1e-06 26.9 0.9 4.6e-06 25.8 0.1 2.0 2 1 0 2 2 2 1 AIG1 family Gtr1_RagA PF04670.7 gi|89256498|ref|YP_513860.1| - 5.7e-06 25.6 0.3 9.6e-06 24.9 0.2 1.4 1 0 0 1 1 1 1 Gtr1/RagA G protein conserved region DUF258 PF03193.11 gi|89256498|ref|YP_513860.1| - 0.00017 20.8 0.2 0.00055 19.1 0.1 2.0 2 0 0 2 2 2 1 Protein of unknown function, DUF258 SUI1 PF01253.17 gi|89256498|ref|YP_513860.1| - 0.00035 20.3 0.5 0.099 12.4 0.0 3.3 4 0 0 4 4 3 1 Translation initiation factor SUI1 SRPRB PF09439.5 gi|89256498|ref|YP_513860.1| - 0.014 14.6 2.0 0.014 14.5 0.1 1.9 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit ABC_tran PF00005.22 gi|89256498|ref|YP_513860.1| - 0.016 15.4 6.6 0.05 13.8 4.6 1.9 1 1 0 1 1 1 0 ABC transporter Arf PF00025.16 gi|89256498|ref|YP_513860.1| - 0.022 14.0 2.1 0.029 13.5 0.2 2.0 2 1 0 2 2 2 0 ADP-ribosylation factor family Fork_head PF00250.13 gi|89256498|ref|YP_513860.1| - 0.04 13.9 0.2 0.15 12.0 0.0 2.0 2 0 0 2 2 2 0 Fork head domain PduV-EutP PF10662.4 gi|89256498|ref|YP_513860.1| - 0.053 13.0 1.6 0.22 11.0 0.4 2.6 2 1 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_28 PF13521.1 gi|89256498|ref|YP_513860.1| - 0.08 12.9 0.0 0.17 11.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|89256498|ref|YP_513860.1| - 0.082 12.3 1.9 0.42 9.9 0.2 2.6 2 1 1 3 3 3 0 AAA domain AAA_18 PF13238.1 gi|89256498|ref|YP_513860.1| - 0.085 13.1 2.7 0.16 12.2 0.1 2.7 3 1 1 4 4 3 0 AAA domain DUF1542 PF07564.6 gi|89256498|ref|YP_513860.1| - 7.9 6.5 12.9 1.4 8.9 0.8 3.4 3 0 0 3 3 3 0 Domain of Unknown Function (DUF1542) A_thal_3526 PF09713.5 gi|89256499|ref|YP_513861.1| - 0.00075 19.5 1.0 0.0018 18.3 0.1 1.9 2 0 0 2 2 2 1 Plant protein 1589 of unknown function (A_thal_3526) VirB3 PF05101.8 gi|89256499|ref|YP_513861.1| - 0.0012 18.7 0.2 0.0015 18.5 0.1 1.1 1 0 0 1 1 1 1 Type IV secretory pathway, VirB3-like protein DUF2852 PF11014.3 gi|89256499|ref|YP_513861.1| - 0.065 13.1 10.3 1.3 9.0 6.4 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF2852) DUF63 PF01889.12 gi|89256499|ref|YP_513861.1| - 0.075 13.1 1.4 0.082 12.9 1.0 1.1 1 0 0 1 1 1 0 Membrane protein of unknown function DUF63 PRA1 PF03208.14 gi|89256499|ref|YP_513861.1| - 0.076 12.3 1.3 0.094 12.0 0.9 1.1 1 0 0 1 1 1 0 PRA1 family protein DUF2207 PF09972.4 gi|89256499|ref|YP_513861.1| - 0.087 11.3 1.4 0.097 11.2 1.0 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) TM231 PF10149.4 gi|89256499|ref|YP_513861.1| - 0.091 11.7 0.0 0.094 11.6 0.0 1.0 1 0 0 1 1 1 0 Transmembrane protein 231 PRT_C PF08372.5 gi|89256499|ref|YP_513861.1| - 0.12 11.8 1.3 0.13 11.7 0.9 1.1 1 0 0 1 1 1 0 Plant phosphoribosyltransferase C-terminal DUF3708 PF12501.3 gi|89256499|ref|YP_513861.1| - 0.13 12.1 0.0 0.2 11.5 0.0 1.3 1 1 0 1 1 1 0 Phosphate ATP-binding cassette transporter Neur PF00064.13 gi|89256499|ref|YP_513861.1| - 0.32 9.0 1.3 0.6 8.1 0.9 1.5 1 1 0 1 1 1 0 Neuraminidase FeoB_C PF07664.7 gi|89256499|ref|YP_513861.1| - 2.1 7.8 5.8 0.48 9.8 0.5 2.0 1 1 1 2 2 2 0 Ferrous iron transport protein B C terminus Ribosomal_S30AE PF02482.14 gi|89256500|ref|YP_513862.1| - 7.7e-33 112.8 2.9 8.3e-33 112.7 2.0 1.0 1 0 0 1 1 1 1 Sigma 54 modulation protein / S30EA ribosomal protein EcoRI PF02963.11 gi|89256500|ref|YP_513862.1| - 0.071 11.8 0.2 0.078 11.7 0.2 1.2 1 0 0 1 1 1 0 Restriction endonuclease EcoRI PTS_EIIA_2 PF00359.17 gi|89256501|ref|YP_513863.1| - 3.5e-28 98.1 0.8 4e-28 97.9 0.6 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SpoU_methylase PF00588.14 gi|89256502|ref|YP_513864.1| - 2.4e-29 102.0 0.6 3.7e-29 101.4 0.4 1.3 1 0 0 1 1 1 1 SpoU rRNA Methylase family Methyltrn_RNA_4 PF09936.4 gi|89256502|ref|YP_513864.1| - 0.09 12.2 0.2 0.23 10.9 0.0 1.7 1 1 1 2 2 2 0 SAM-dependent RNA methyltransferase OTCace PF00185.19 gi|89256502|ref|YP_513864.1| - 0.096 12.5 0.0 0.16 11.8 0.0 1.4 1 0 0 1 1 1 0 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RNase_HII PF01351.13 gi|89256503|ref|YP_513865.1| - 4.9e-50 169.9 0.1 5.5e-50 169.7 0.1 1.0 1 0 0 1 1 1 1 Ribonuclease HII ACP_syn_III_C PF08541.5 gi|89256503|ref|YP_513865.1| - 0.041 13.8 0.2 0.28 11.2 0.0 2.2 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal SAC3_GANP PF03399.11 gi|89256503|ref|YP_513865.1| - 0.089 12.3 0.2 0.12 11.9 0.1 1.2 1 0 0 1 1 1 0 SAC3/GANP/Nin1/mts3/eIF-3 p25 family SSF PF00474.12 gi|89256504|ref|YP_513866.1| - 2.7e-12 46.0 40.5 1.8e-11 43.3 28.1 2.0 1 1 0 1 1 1 1 Sodium:solute symporter family UPF0233 PF06781.7 gi|89256504|ref|YP_513866.1| - 0.054 13.1 0.4 0.054 13.1 0.3 3.5 2 2 1 3 3 3 0 Uncharacterised protein family (UPF0233) SspB PF04386.8 gi|89256505|ref|YP_513867.1| - 5.4e-26 91.0 0.1 7.4e-26 90.6 0.1 1.2 1 1 0 1 1 1 1 Stringent starvation protein B GST_N_3 PF13417.1 gi|89256506|ref|YP_513868.1| - 2.4e-06 27.6 0.0 4.7e-06 26.7 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.1 gi|89256506|ref|YP_513868.1| - 0.016 15.1 0.0 0.03 14.3 0.0 1.5 1 0 0 1 1 1 0 Glutathione S-transferase, N-terminal domain Ribosomal_S9 PF00380.14 gi|89256507|ref|YP_513869.1| - 8.8e-47 158.3 0.3 9.9e-47 158.1 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 Ribosomal_L13 PF00572.13 gi|89256508|ref|YP_513870.1| - 1.2e-55 186.9 0.4 1.4e-55 186.7 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L13 TrpBP PF02081.10 gi|89256508|ref|YP_513870.1| - 0.093 12.1 0.1 0.16 11.3 0.1 1.5 1 0 0 1 1 1 0 Tryptophan RNA-binding attenuator protein NAD_binding_8 PF13450.1 gi|89256509|ref|YP_513871.1| - 2e-09 37.3 0.0 3.9e-09 36.3 0.0 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Amino_oxidase PF01593.19 gi|89256509|ref|YP_513871.1| - 4.2e-06 26.1 0.0 4.9e-06 25.8 0.0 1.3 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase DAO PF01266.19 gi|89256509|ref|YP_513871.1| - 8.5e-06 24.9 0.0 0.0025 16.7 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|89256509|ref|YP_513871.1| - 9e-05 22.6 0.0 0.36 10.8 0.0 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|89256509|ref|YP_513871.1| - 0.0026 17.5 0.0 0.018 14.7 0.0 2.1 2 0 0 2 2 2 1 FAD-NAD(P)-binding Thi4 PF01946.12 gi|89256509|ref|YP_513871.1| - 0.004 16.2 0.0 0.0071 15.4 0.0 1.4 1 0 0 1 1 1 1 Thi4 family Pyr_redox_2 PF07992.9 gi|89256509|ref|YP_513871.1| - 0.0043 16.9 0.1 0.043 13.6 0.0 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|89256509|ref|YP_513871.1| - 0.042 12.8 0.0 0.083 11.9 0.0 1.4 1 0 0 1 1 1 0 FAD binding domain Lycopene_cycl PF05834.7 gi|89256509|ref|YP_513871.1| - 0.06 12.2 0.1 0.14 11.0 0.0 1.6 2 0 0 2 2 2 0 Lycopene cyclase protein HI0933_like PF03486.9 gi|89256509|ref|YP_513871.1| - 0.51 8.7 3.0 0.92 7.8 0.2 2.4 3 0 0 3 3 3 0 HI0933-like protein MltA PF03562.12 gi|89256510|ref|YP_513872.1| - 1.9e-49 167.4 0.1 3.9e-49 166.3 0.0 1.5 1 0 0 1 1 1 1 MltA specific insert domain 3D PF06725.6 gi|89256510|ref|YP_513872.1| - 3.5e-22 78.1 0.0 6.4e-22 77.3 0.0 1.5 1 0 0 1 1 1 1 3D domain Surface_antigen PF11054.3 gi|89256510|ref|YP_513872.1| - 0.005 16.2 0.1 0.007 15.7 0.1 1.2 1 0 0 1 1 1 1 Sporozoite TA4 surface antigen DUF2647 PF10839.3 gi|89256510|ref|YP_513872.1| - 0.073 13.1 0.0 0.23 11.5 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2647) GrpE PF01025.14 gi|89256511|ref|YP_513873.1| - 1.2e-54 184.3 9.2 1.5e-54 184.0 6.4 1.2 1 0 0 1 1 1 1 GrpE Myosin_tail_1 PF01576.14 gi|89256511|ref|YP_513873.1| - 0.0067 14.2 16.5 0.0086 13.8 11.4 1.2 1 0 0 1 1 1 1 Myosin tail DHC_N2 PF08393.8 gi|89256511|ref|YP_513873.1| - 0.079 11.4 4.4 0.11 11.0 3.0 1.1 1 0 0 1 1 1 0 Dynein heavy chain, N-terminal region 2 MSP1a PF11670.3 gi|89256511|ref|YP_513873.1| - 0.086 12.6 0.9 0.11 12.3 0.6 1.2 1 0 0 1 1 1 0 Major surface protein 1a (MSP1a) Ax_dynein_light PF10211.4 gi|89256511|ref|YP_513873.1| - 0.46 10.2 7.0 0.48 10.2 4.0 1.7 1 1 0 1 1 1 0 Axonemal dynein light chain Birna_RdRp PF04197.7 gi|89256511|ref|YP_513873.1| - 0.48 8.3 2.9 0.48 8.3 2.0 1.0 1 0 0 1 1 1 0 Birnavirus RNA dependent RNA polymerase (VP1) DUF2203 PF09969.4 gi|89256511|ref|YP_513873.1| - 1.3 9.2 5.4 1.9 8.6 0.8 2.3 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) NCKAP5 PF15246.1 gi|89256511|ref|YP_513873.1| - 1.5 8.0 6.7 1.8 7.8 4.7 1.1 1 0 0 1 1 1 0 Nck-associated protein 5, Peripheral clock protein DUF883 PF05957.8 gi|89256511|ref|YP_513873.1| - 2.3 8.7 6.4 1.3 9.4 1.9 2.3 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) APG6 PF04111.7 gi|89256511|ref|YP_513873.1| - 5.3 5.9 10.8 6.8 5.6 7.5 1.1 1 0 0 1 1 1 0 Autophagy protein Apg6 HSP70 PF00012.15 gi|89256512|ref|YP_513874.1| - 5.9e-265 879.8 18.0 6.9e-265 879.6 12.5 1.0 1 0 0 1 1 1 1 Hsp70 protein MreB_Mbl PF06723.8 gi|89256512|ref|YP_513874.1| - 6.9e-13 47.8 6.7 7.7e-12 44.4 0.2 3.0 3 1 0 3 3 3 2 MreB/Mbl protein FGGY_C PF02782.11 gi|89256512|ref|YP_513874.1| - 0.0075 15.8 0.0 0.017 14.7 0.0 1.7 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain RNA_pol_Rpb2_2 PF04561.9 gi|89256512|ref|YP_513874.1| - 0.059 12.7 0.9 0.16 11.4 0.6 1.7 1 0 0 1 1 1 0 RNA polymerase Rpb2, domain 2 FtsA PF14450.1 gi|89256512|ref|YP_513874.1| - 0.11 12.2 13.2 1.1 9.1 0.2 5.0 3 2 0 3 3 3 0 Cell division protein FtsA Hydantoinase_A PF01968.13 gi|89256512|ref|YP_513874.1| - 0.8 8.7 9.2 0.04 13.0 0.3 2.8 2 1 1 3 3 3 0 Hydantoinase/oxoprolinase SICA_alpha PF12887.2 gi|89256512|ref|YP_513874.1| - 0.82 9.3 7.2 0.12 12.1 2.2 1.7 2 0 0 2 2 2 0 SICA extracellular alpha domain CTDII PF01556.13 gi|89256513|ref|YP_513875.1| - 5.9e-35 119.0 2.0 6.2e-23 80.4 0.0 3.4 3 0 0 3 3 3 3 DnaJ C terminal domain DnaJ PF00226.26 gi|89256513|ref|YP_513875.1| - 2.7e-28 97.4 1.2 4.4e-28 96.7 0.8 1.4 1 0 0 1 1 1 1 DnaJ domain DnaJ_CXXCXGXG PF00684.14 gi|89256513|ref|YP_513875.1| - 3.2e-13 49.5 15.0 5.8e-13 48.6 10.4 1.5 1 0 0 1 1 1 1 DnaJ central domain Antiterm PF03589.8 gi|89256513|ref|YP_513875.1| - 2.1 8.4 5.2 3 7.9 2.7 2.1 2 0 0 2 2 2 0 Antitermination protein HypA PF01155.14 gi|89256513|ref|YP_513875.1| - 9.2 5.9 7.5 45 3.7 5.2 2.1 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family LysR_substrate PF03466.15 gi|89256514|ref|YP_513876.1| - 6.2e-29 100.5 0.0 7.3e-29 100.3 0.0 1.0 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.22 gi|89256514|ref|YP_513876.1| - 0.017 14.8 0.0 0.066 12.9 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family DNA_pol3_beta_3 PF02768.10 gi|89256515|ref|YP_513877.1| - 0.1 12.1 0.1 0.12 11.9 0.1 1.1 1 0 0 1 1 1 0 DNA polymerase III beta subunit, C-terminal domain DDE_3 PF13358.1 gi|89256516|ref|YP_513878.1| - 1.7e-31 108.9 0.0 2.8e-31 108.2 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.11 gi|89256516|ref|YP_513878.1| - 1.5e-07 31.0 0.2 1.1e-06 28.3 0.1 2.1 2 0 0 2 2 2 1 Transposase DDE_1 PF03184.14 gi|89256516|ref|YP_513878.1| - 5.8e-07 28.8 0.1 9.5e-07 28.1 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_28 PF13518.1 gi|89256516|ref|YP_513878.1| - 0.00058 19.8 0.0 0.0018 18.2 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain rve PF00665.21 gi|89256516|ref|YP_513878.1| - 0.00072 19.6 0.0 0.0013 18.7 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.1 gi|89256516|ref|YP_513878.1| - 0.0087 15.6 0.0 0.029 14.0 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.1 gi|89256516|ref|YP_513878.1| - 0.02 15.0 0.0 0.032 14.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix DDE_Tnp_ISAZ013 PF07592.6 gi|89256516|ref|YP_513878.1| - 0.039 12.6 0.6 0.32 9.7 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain EamA PF00892.15 gi|89256517|ref|YP_513879.1| - 3.8e-37 127.1 42.2 4.4e-19 68.7 13.5 2.5 1 1 2 3 3 3 2 EamA-like transporter family EmrE PF13536.1 gi|89256517|ref|YP_513879.1| - 9e-05 22.6 34.2 0.00022 21.3 5.0 3.2 1 1 2 3 3 3 2 Multidrug resistance efflux transporter DUF4538 PF15061.1 gi|89256517|ref|YP_513879.1| - 1.4 8.2 4.9 4.1 6.7 0.3 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4538) tRNA-synt_2d PF01409.15 gi|89256518|ref|YP_513880.1| - 3.5e-106 353.9 0.0 4.2e-106 353.6 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) Phe_tRNA-synt_N PF02912.13 gi|89256518|ref|YP_513880.1| - 1.1e-22 79.4 5.4 1.8e-22 78.8 3.7 1.3 1 0 0 1 1 1 1 Aminoacyl tRNA synthetase class II, N-terminal domain B3_4 PF03483.12 gi|89256519|ref|YP_513881.1| - 8e-68 227.3 0.0 3.2e-67 225.3 0.0 2.1 2 0 0 2 2 2 1 B3/4 domain tRNA_bind PF01588.15 gi|89256519|ref|YP_513881.1| - 3.5e-25 87.6 0.2 6.5e-25 86.7 0.1 1.5 1 0 0 1 1 1 1 Putative tRNA binding domain FDX-ACB PF03147.9 gi|89256519|ref|YP_513881.1| - 7.8e-24 83.6 1.5 3.1e-23 81.7 1.0 2.1 2 0 0 2 2 2 1 Ferredoxin-fold anticodon binding domain B5 PF03484.10 gi|89256519|ref|YP_513881.1| - 1.6e-18 66.2 1.0 2.1e-17 62.7 0.1 3.2 3 0 0 3 3 3 1 tRNA synthetase B5 domain FUR PF01475.14 gi|89256520|ref|YP_513882.1| - 5.4e-11 42.4 0.1 6.4e-11 42.2 0.1 1.1 1 0 0 1 1 1 1 Ferric uptake regulator family Baculo_ME53 PF06061.6 gi|89256520|ref|YP_513882.1| - 0.0071 15.3 9.4 0.0048 15.9 5.8 1.5 1 1 0 1 1 1 1 Baculoviridae ME53 Cystatin PF00031.16 gi|89256520|ref|YP_513882.1| - 0.011 15.8 1.2 0.013 15.6 0.1 1.7 2 1 0 2 2 2 0 Cystatin domain FeoC PF09012.5 gi|89256520|ref|YP_513882.1| - 0.029 14.0 0.2 0.081 12.6 0.2 1.9 1 1 0 1 1 1 0 FeoC like transcriptional regulator MarR PF01047.17 gi|89256520|ref|YP_513882.1| - 0.15 11.7 0.0 0.34 10.6 0.0 1.7 1 1 0 1 1 1 0 MarR family cobW PF02492.14 gi|89256521|ref|YP_513883.1| - 1.2e-51 174.7 3.2 1.5e-51 174.3 2.3 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CobW_C PF07683.9 gi|89256521|ref|YP_513883.1| - 1.2e-25 89.0 0.2 2.8e-25 87.8 0.0 1.7 2 0 0 2 2 2 1 Cobalamin synthesis protein cobW C-terminal domain UPF0079 PF02367.12 gi|89256521|ref|YP_513883.1| - 0.0077 15.8 0.1 0.05 13.2 0.1 2.2 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 MobB PF03205.9 gi|89256521|ref|YP_513883.1| - 0.011 15.3 0.6 0.051 13.2 0.0 2.2 2 1 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B T2SE PF00437.15 gi|89256521|ref|YP_513883.1| - 0.02 13.7 1.4 0.024 13.5 0.0 1.7 2 0 0 2 2 2 0 Type II/IV secretion system protein Zeta_toxin PF06414.7 gi|89256521|ref|YP_513883.1| - 0.032 13.3 0.1 0.079 12.0 0.0 1.6 2 0 0 2 2 2 0 Zeta toxin Viral_helicase1 PF01443.13 gi|89256521|ref|YP_513883.1| - 0.034 13.6 0.0 0.064 12.7 0.0 1.5 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_14 PF13173.1 gi|89256521|ref|YP_513883.1| - 0.035 13.9 2.9 0.26 11.1 0.0 3.0 3 1 0 3 3 3 0 AAA domain AAA_22 PF13401.1 gi|89256521|ref|YP_513883.1| - 0.057 13.5 0.0 0.18 11.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|89256521|ref|YP_513883.1| - 0.069 13.4 0.2 0.13 12.5 0.1 1.8 1 1 0 1 1 1 0 ABC transporter AAA_18 PF13238.1 gi|89256521|ref|YP_513883.1| - 0.12 12.6 0.1 0.12 12.6 0.0 3.0 3 1 0 3 3 3 0 AAA domain AAA_23 PF13476.1 gi|89256521|ref|YP_513883.1| - 6.6 6.9 8.3 28 4.9 5.8 2.0 1 1 0 1 1 1 0 AAA domain Zip PF02535.17 gi|89256522|ref|YP_513884.1| - 5.4e-27 94.6 23.5 7.3e-19 67.9 8.6 2.0 1 1 1 2 2 2 2 ZIP Zinc transporter Acid_phosphat_B PF03767.9 gi|89256523|ref|YP_513885.1| - 5.4e-08 32.4 0.1 0.00073 18.9 0.0 2.2 1 1 1 2 2 2 2 HAD superfamily, subfamily IIIB (Acid phosphatase) PLDc_2 PF13091.1 gi|89256524|ref|YP_513886.1| - 3e-38 130.4 6.0 6.6e-23 80.8 0.9 2.5 2 0 0 2 2 2 2 PLD-like domain PLDc PF00614.17 gi|89256524|ref|YP_513886.1| - 6.1e-07 29.0 7.1 0.00089 18.9 0.3 3.6 3 0 0 3 3 3 2 Phospholipase D Active site motif PLDc_N PF13396.1 gi|89256524|ref|YP_513886.1| - 6.6e-05 22.4 4.3 6.6e-05 22.4 3.0 2.0 2 0 0 2 2 2 1 Phospholipase_D-nuclease N-terminal THOC7 PF05615.8 gi|89256524|ref|YP_513886.1| - 0.037 14.2 0.5 0.065 13.4 0.3 1.3 1 0 0 1 1 1 0 Tho complex subunit 7 DUF843 PF05814.6 gi|89256524|ref|YP_513886.1| - 0.097 12.4 4.9 0.043 13.6 1.0 2.2 2 0 0 2 2 2 0 Baculovirus protein of unknown function (DUF843) PLDc_2 PF13091.1 gi|89256525|ref|YP_513887.1| - 4.5e-39 133.0 3.2 6.3e-25 87.3 0.2 2.3 2 0 0 2 2 2 2 PLD-like domain PLDc PF00614.17 gi|89256525|ref|YP_513887.1| - 6.6e-12 44.8 2.2 1.1e-05 25.0 0.1 2.8 3 0 0 3 3 3 2 Phospholipase D Active site motif PLDc_N PF13396.1 gi|89256525|ref|YP_513887.1| - 0.00036 20.1 8.0 0.00036 20.1 5.5 2.2 3 0 0 3 3 3 1 Phospholipase_D-nuclease N-terminal DUF3880 PF12996.2 gi|89256525|ref|YP_513887.1| - 0.018 14.9 0.1 0.065 13.1 0.0 1.9 1 0 0 1 1 1 0 DUF based on E. rectale Gene description (DUF3880) AAA_12 PF13087.1 gi|89256525|ref|YP_513887.1| - 0.051 12.9 0.0 0.15 11.4 0.0 1.9 1 1 0 1 1 1 0 AAA domain DUF843 PF05814.6 gi|89256525|ref|YP_513887.1| - 0.14 11.9 4.8 0.046 13.5 1.0 2.0 2 0 0 2 2 2 0 Baculovirus protein of unknown function (DUF843) MFS_1 PF07690.11 gi|89256526|ref|YP_513888.1| - 4.8e-05 22.2 17.7 6.1e-05 21.8 12.3 1.2 1 0 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|89256526|ref|YP_513888.1| - 0.003 16.2 13.1 0.0036 15.9 9.1 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter Sugar_tr PF00083.19 gi|89256527|ref|YP_513889.1| - 3.7e-11 42.2 9.3 4.3e-11 42.0 6.5 1.1 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.11 gi|89256527|ref|YP_513889.1| - 7e-11 41.4 13.1 8.7e-11 41.1 9.1 1.2 1 0 0 1 1 1 1 Major Facilitator Superfamily MFS_3 PF05977.8 gi|89256527|ref|YP_513889.1| - 0.014 13.5 0.1 0.017 13.2 0.1 1.1 1 0 0 1 1 1 0 Transmembrane secretion effector ABC2_membrane PF01061.19 gi|89256527|ref|YP_513889.1| - 0.021 14.0 4.1 0.021 14.0 2.8 2.0 2 0 0 2 2 2 0 ABC-2 type transporter PTPS_related PF10131.4 gi|89256527|ref|YP_513889.1| - 0.046 11.8 2.1 0.052 11.6 1.4 1.2 1 0 0 1 1 1 0 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein FeoB_C PF07664.7 gi|89256527|ref|YP_513889.1| - 5.4 6.5 6.0 2.3 7.7 0.1 2.9 2 1 1 3 3 3 0 Ferrous iron transport protein B C terminus ParA PF10609.4 gi|89256528|ref|YP_513890.1| - 1.6e-35 120.7 0.1 3.3e-35 119.8 0.0 1.5 1 0 0 1 1 1 1 ParA/MinD ATPase like CbiA PF01656.18 gi|89256528|ref|YP_513890.1| - 3.6e-22 78.7 0.1 5.7e-22 78.0 0.1 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.10 gi|89256528|ref|YP_513890.1| - 1.4e-09 37.4 0.0 9.8e-06 24.8 0.0 2.3 2 0 0 2 2 2 2 Anion-transporting ATPase MipZ PF09140.6 gi|89256528|ref|YP_513890.1| - 3.5e-09 36.1 0.0 4.8e-09 35.6 0.0 1.1 1 0 0 1 1 1 1 ATPase MipZ AAA_31 PF13614.1 gi|89256528|ref|YP_513890.1| - 1.7e-08 34.5 0.0 7.5e-08 32.4 0.0 1.9 2 0 0 2 2 2 1 AAA domain Fer4_NifH PF00142.13 gi|89256528|ref|YP_513890.1| - 1.4e-07 30.9 0.1 7.6e-07 28.5 0.1 2.0 1 1 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family SRP54 PF00448.17 gi|89256528|ref|YP_513890.1| - 0.0016 17.9 0.1 0.0027 17.1 0.1 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain ArgK PF03308.11 gi|89256528|ref|YP_513890.1| - 0.0057 15.4 0.1 0.0088 14.8 0.1 1.3 1 0 0 1 1 1 1 ArgK protein AAA_25 PF13481.1 gi|89256528|ref|YP_513890.1| - 0.0072 15.7 0.0 0.013 14.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_26 PF13500.1 gi|89256528|ref|YP_513890.1| - 0.013 15.0 0.0 5.4 6.5 0.0 2.5 2 1 0 2 2 2 0 AAA domain A2L_zn_ribbon PF08792.5 gi|89256528|ref|YP_513890.1| - 0.017 14.5 0.1 0.017 14.5 0.0 1.8 2 0 0 2 2 2 0 A2L zinc ribbon domain VirC1 PF07015.6 gi|89256528|ref|YP_513890.1| - 0.023 13.8 0.2 0.061 12.4 0.0 1.7 2 0 0 2 2 2 0 VirC1 protein YhjQ PF06564.7 gi|89256528|ref|YP_513890.1| - 0.027 13.8 0.2 0.083 12.2 0.1 1.7 2 0 0 2 2 2 0 YhjQ protein DUF258 PF03193.11 gi|89256528|ref|YP_513890.1| - 0.033 13.3 0.2 0.055 12.6 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 dUTPase PF00692.14 gi|89256529|ref|YP_513891.1| - 7.7e-07 28.6 0.0 8.5e-06 25.2 0.0 2.0 1 1 0 2 2 2 1 dUTPase MS_channel PF00924.13 gi|89256530|ref|YP_513892.1| - 4.1e-41 140.5 2.6 5.2e-40 136.9 1.8 1.9 1 1 0 1 1 1 1 Mechanosensitive ion channel LptE PF04390.7 gi|89256532|ref|YP_513894.1| - 2.1e-18 66.5 0.4 2.5e-18 66.3 0.3 1.1 1 0 0 1 1 1 1 Lipopolysaccharide-assembly Adhesin_P1 PF03257.8 gi|89256532|ref|YP_513894.1| - 0.0095 16.2 2.2 0.045 14.0 0.0 2.5 2 1 0 2 2 2 1 Mycoplasma adhesin P1 tRNA-synt_1 PF00133.17 gi|89256533|ref|YP_513895.1| - 1.7e-86 290.5 9.2 4.1e-30 104.3 1.5 4.9 1 1 3 4 4 4 4 tRNA synthetases class I (I, L, M and V) tRNA-synt_1_2 PF13603.1 gi|89256533|ref|YP_513895.1| - 2.2e-79 265.0 0.7 3.8e-79 264.2 0.5 1.4 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1g PF09334.6 gi|89256533|ref|YP_513895.1| - 2.1e-35 122.1 1.4 2.3e-22 79.2 0.1 4.7 3 2 0 3 3 3 2 tRNA synthetases class I (M) Anticodon_1 PF08264.8 gi|89256533|ref|YP_513895.1| - 3e-16 59.5 0.1 1.3e-15 57.4 0.0 2.1 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.14 gi|89256533|ref|YP_513895.1| - 1.9e-08 33.8 0.2 0.00015 21.0 0.0 2.7 3 0 0 3 3 3 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.13 gi|89256533|ref|YP_513895.1| - 1.4e-06 27.2 0.0 0.0029 16.3 0.0 3.0 3 0 0 3 3 3 2 tRNA synthetases class I (K) tRNA-synt_1d PF00750.14 gi|89256533|ref|YP_513895.1| - 3e-06 26.3 0.7 0.0008 18.3 0.0 2.8 3 0 0 3 3 3 2 tRNA synthetases class I (R) zf-ribbon_3 PF13248.1 gi|89256533|ref|YP_513895.1| - 0.53 9.5 2.7 1.9 7.8 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain DUF3857 PF12969.2 gi|89256534|ref|YP_513896.1| - 3.7e-21 75.5 2.0 6e-21 74.8 1.4 1.3 1 0 0 1 1 1 1 Domain of Unknown Function with PDB structure (DUF3857) Transglut_core PF01841.14 gi|89256534|ref|YP_513896.1| - 5.5e-05 23.3 0.0 0.00012 22.3 0.0 1.5 1 0 0 1 1 1 1 Transglutaminase-like superfamily Sel1 PF08238.7 gi|89256535|ref|YP_513897.1| - 1.3e-09 38.3 2.4 3.7e-08 33.7 0.2 2.2 2 0 0 2 2 2 1 Sel1 repeat TPR_17 PF13431.1 gi|89256535|ref|YP_513897.1| - 0.0075 16.3 3.1 2.4 8.5 0.1 3.0 2 1 0 2 2 2 2 Tetratricopeptide repeat TPR_8 PF13181.1 gi|89256535|ref|YP_513897.1| - 0.018 14.7 0.7 0.018 14.7 0.5 2.5 2 2 1 3 3 3 0 Tetratricopeptide repeat TPR_19 PF14559.1 gi|89256535|ref|YP_513897.1| - 0.022 15.0 0.7 0.94 9.8 0.4 2.4 1 1 1 2 2 2 0 Tetratricopeptide repeat Ank_2 PF12796.2 gi|89256535|ref|YP_513897.1| - 0.023 15.0 0.1 0.034 14.4 0.0 1.3 1 1 0 1 1 1 0 Ankyrin repeats (3 copies) MRP-63 PF14978.1 gi|89256535|ref|YP_513897.1| - 0.038 14.4 0.1 0.049 14.0 0.1 1.3 1 0 0 1 1 1 0 Mitochondrial ribosome protein 63 ANTAR PF03861.9 gi|89256535|ref|YP_513897.1| - 0.051 13.1 0.1 2.3 7.8 0.0 2.1 2 0 0 2 2 2 0 ANTAR domain DUF3087 PF11286.3 gi|89256535|ref|YP_513897.1| - 0.068 12.3 1.6 0.16 11.1 1.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3087) TPR_3 PF07720.7 gi|89256535|ref|YP_513897.1| - 0.096 12.5 0.9 0.23 11.3 0.6 1.6 1 0 0 1 1 1 0 Tetratricopeptide repeat TPR_16 PF13432.1 gi|89256535|ref|YP_513897.1| - 0.16 12.6 0.5 0.28 11.8 0.1 1.6 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_2 PF07719.12 gi|89256535|ref|YP_513897.1| - 0.17 11.8 5.8 0.63 10.1 0.3 3.0 2 1 1 3 3 3 0 Tetratricopeptide repeat TPR_6 PF13174.1 gi|89256535|ref|YP_513897.1| - 1.9 9.1 4.8 8.4 7.0 0.4 2.5 2 1 0 2 2 2 0 Tetratricopeptide repeat UPF0081 PF03652.10 gi|89256536|ref|YP_513898.1| - 5.6e-35 120.3 0.1 6.2e-35 120.2 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0081) FTCD_N PF07837.7 gi|89256536|ref|YP_513898.1| - 0.044 13.3 0.0 0.06 12.8 0.0 1.1 1 0 0 1 1 1 0 Formiminotransferase domain, N-terminal subdomain Endonuc_Holl PF10107.4 gi|89256536|ref|YP_513898.1| - 0.094 12.4 0.2 0.12 12.0 0.1 1.2 1 0 0 1 1 1 0 Endonuclease related to archaeal Holliday junction resolvase DUF179 PF02622.10 gi|89256537|ref|YP_513899.1| - 1e-42 145.4 0.0 1.2e-42 145.3 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized ACR, COG1678 Glyco_hydro_101 PF12905.2 gi|89256537|ref|YP_513899.1| - 0.0063 15.1 0.2 0.0076 14.9 0.1 1.1 1 0 0 1 1 1 1 Endo-alpha-N-acetylgalactosaminidase AAA_9 PF12781.2 gi|89256538|ref|YP_513900.1| - 0.03 13.1 0.5 0.035 12.9 0.4 1.2 1 0 0 1 1 1 0 ATP-binding dynein motor region D5 Ten1 PF12658.2 gi|89256538|ref|YP_513900.1| - 0.031 14.0 0.1 0.17 11.6 0.1 1.9 2 1 0 2 2 2 0 Telomere capping, CST complex subunit Rsm22 PF09243.5 gi|89256538|ref|YP_513900.1| - 0.037 13.0 1.2 0.65 8.9 0.3 2.0 1 1 1 2 2 2 0 Mitochondrial small ribosomal subunit Rsm22 HD_2 PF12917.2 gi|89256538|ref|YP_513900.1| - 0.043 13.5 0.4 0.049 13.4 0.3 1.2 1 0 0 1 1 1 0 HD containing hydrolase-like enzyme PAS PF00989.19 gi|89256539|ref|YP_513901.1| - 3.4e-06 26.8 0.0 8e-06 25.6 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.5 gi|89256539|ref|YP_513901.1| - 3.7e-06 26.9 0.0 5.8e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.1 gi|89256539|ref|YP_513901.1| - 1e-05 25.8 0.1 2.1e-05 24.8 0.1 1.5 1 0 0 1 1 1 1 PAS domain H_kinase_N PF12282.3 gi|89256539|ref|YP_513901.1| - 0.044 13.3 0.0 0.21 11.1 0.0 1.9 1 1 0 1 1 1 0 Signal transduction histidine kinase Aminotran_1_2 PF00155.16 gi|89256540|ref|YP_513902.1| - 3e-18 65.9 0.0 4.4e-18 65.3 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II OKR_DC_1 PF01276.15 gi|89256540|ref|YP_513902.1| - 0.046 12.2 0.0 0.077 11.5 0.0 1.4 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain AA_permease PF00324.16 gi|89256541|ref|YP_513903.1| - 8.7e-98 327.7 62.0 9.7e-98 327.5 43.0 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.1 gi|89256541|ref|YP_513903.1| - 1.6e-40 138.9 62.6 2.1e-40 138.5 43.4 1.0 1 0 0 1 1 1 1 Amino acid permease CytB6-F_Fe-S PF08802.5 gi|89256541|ref|YP_513903.1| - 3.6 7.6 7.8 0.48 10.4 0.5 2.7 2 0 0 2 2 2 0 Cytochrome B6-F complex Fe-S subunit HTH_34 PF13601.1 gi|89256543|ref|YP_513905.1| - 1.2e-29 102.1 0.1 1.4e-29 101.9 0.1 1.0 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|89256543|ref|YP_513905.1| - 4.6e-05 23.1 0.0 6.2e-05 22.7 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|89256543|ref|YP_513905.1| - 0.00018 20.8 0.0 0.00057 19.2 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|89256543|ref|YP_513905.1| - 0.00036 20.1 0.0 0.00051 19.6 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family DUF1495 PF07381.6 gi|89256543|ref|YP_513905.1| - 0.031 13.9 0.2 1.1 9.0 0.2 2.1 1 1 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) HTH_27 PF13463.1 gi|89256543|ref|YP_513905.1| - 0.045 14.0 0.0 0.062 13.6 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain PadR PF03551.9 gi|89256543|ref|YP_513905.1| - 0.092 12.5 0.0 0.11 12.2 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_45 PF14947.1 gi|89256543|ref|YP_513905.1| - 0.099 12.4 0.3 0.14 12.0 0.2 1.5 1 1 0 1 1 1 0 Winged helix-turn-helix MarR PF01047.17 gi|89256543|ref|YP_513905.1| - 0.11 12.2 0.0 0.18 11.5 0.0 1.3 1 0 0 1 1 1 0 MarR family HxlR PF01638.12 gi|89256543|ref|YP_513905.1| - 0.11 12.1 0.0 0.14 11.7 0.0 1.2 1 0 0 1 1 1 0 HxlR-like helix-turn-helix DUF3293 PF11697.3 gi|89256544|ref|YP_513906.1| - 4e-06 26.8 0.0 5.8e-06 26.3 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3293) DUF4490 PF14892.1 gi|89256544|ref|YP_513906.1| - 0.065 12.8 0.1 0.096 12.3 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4490) ELK PF03789.8 gi|89256544|ref|YP_513906.1| - 0.17 11.7 2.2 0.31 10.9 1.5 1.4 1 0 0 1 1 1 0 ELK domain Thioredoxin PF00085.15 gi|89256545|ref|YP_513907.1| - 6.1e-32 109.3 0.2 6.8e-32 109.2 0.2 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_8 PF13905.1 gi|89256545|ref|YP_513907.1| - 3.6e-11 43.0 0.2 8.3e-09 35.4 0.1 2.2 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_2 PF13098.1 gi|89256545|ref|YP_513907.1| - 1.4e-10 41.3 0.1 5.4e-10 39.4 0.1 1.7 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_7 PF13899.1 gi|89256545|ref|YP_513907.1| - 1e-07 31.8 0.1 1.7e-07 31.1 0.1 1.4 1 1 0 1 1 1 1 Thioredoxin-like TraF PF13728.1 gi|89256545|ref|YP_513907.1| - 5.5e-06 26.0 0.0 6.5e-06 25.7 0.0 1.1 1 0 0 1 1 1 1 F plasmid transfer operon protein AhpC-TSA PF00578.16 gi|89256545|ref|YP_513907.1| - 6.3e-06 25.8 0.1 7.1e-06 25.7 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Thioredoxin_9 PF14595.1 gi|89256545|ref|YP_513907.1| - 1e-05 25.1 0.1 1.1e-05 24.9 0.1 1.1 1 0 0 1 1 1 1 Thioredoxin HyaE PF07449.6 gi|89256545|ref|YP_513907.1| - 2.4e-05 24.1 0.1 6.1e-05 22.8 0.1 1.7 1 1 0 1 1 1 1 Hydrogenase-1 expression protein HyaE Redoxin PF08534.5 gi|89256545|ref|YP_513907.1| - 3.5e-05 23.3 0.1 4.2e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 Redoxin DUF836 PF05768.9 gi|89256545|ref|YP_513907.1| - 0.0013 18.9 0.0 0.002 18.3 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Phosducin PF02114.11 gi|89256545|ref|YP_513907.1| - 0.0025 16.6 0.0 0.0028 16.4 0.0 1.0 1 0 0 1 1 1 1 Phosducin DIM1 PF02966.11 gi|89256545|ref|YP_513907.1| - 0.0068 15.9 0.1 0.0079 15.7 0.1 1.1 1 0 0 1 1 1 1 Mitosis protein DIM1 Thioredoxin_6 PF13848.1 gi|89256545|ref|YP_513907.1| - 0.0097 15.7 0.1 0.012 15.4 0.1 1.1 1 0 0 1 1 1 1 Thioredoxin-like domain DSBA PF01323.15 gi|89256545|ref|YP_513907.1| - 0.012 15.1 0.1 0.32 10.5 0.0 2.0 1 1 1 2 2 2 0 DSBA-like thioredoxin domain Glutaredoxin PF00462.19 gi|89256545|ref|YP_513907.1| - 0.012 15.5 0.1 0.022 14.7 0.0 1.5 1 1 0 1 1 1 0 Glutaredoxin Thioredoxin_5 PF13743.1 gi|89256545|ref|YP_513907.1| - 0.024 14.1 0.1 0.056 13.0 0.0 1.6 1 1 1 2 2 2 0 Thioredoxin DUF953 PF06110.6 gi|89256545|ref|YP_513907.1| - 0.029 13.8 0.2 0.12 11.8 0.2 1.9 1 1 0 1 1 1 0 Eukaryotic protein of unknown function (DUF953) Thioredoxin_3 PF13192.1 gi|89256545|ref|YP_513907.1| - 0.033 13.9 0.0 0.042 13.6 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin domain TrbC_Ftype PF09673.5 gi|89256545|ref|YP_513907.1| - 0.06 12.9 0.0 0.061 12.9 0.0 1.3 1 0 0 1 1 1 0 Type-F conjugative transfer system pilin assembly protein PSP94 PF05825.6 gi|89256546|ref|YP_513908.1| - 0.059 13.6 0.0 0.14 12.4 0.0 1.7 1 0 0 1 1 1 0 Beta-microseminoprotein (PSP-94) KxDL PF10241.4 gi|89256546|ref|YP_513908.1| - 1 9.2 5.5 2.7 7.9 0.1 2.6 2 1 1 3 3 3 0 Uncharacterized conserved protein UPF0051 PF01458.12 gi|89256547|ref|YP_513909.1| - 9.1e-56 188.8 1.0 1.1e-55 188.5 0.7 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) DUF1433 PF07252.6 gi|89256547|ref|YP_513909.1| - 0.032 14.4 1.3 0.032 14.4 0.9 3.5 3 1 0 3 3 3 0 Protein of unknown function (DUF1433) SoxE PF06525.6 gi|89256547|ref|YP_513909.1| - 0.73 9.0 4.8 0.16 11.2 0.5 1.8 2 0 0 2 2 2 0 Sulfocyanin (SoxE) ABC_tran PF00005.22 gi|89256548|ref|YP_513910.1| - 1.2e-22 80.7 0.4 1.7e-22 80.2 0.3 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.14 gi|89256548|ref|YP_513910.1| - 2.8e-05 23.4 4.6 0.0008 18.6 3.2 2.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|89256548|ref|YP_513910.1| - 3.8e-05 22.9 0.4 7.1e-05 22.0 0.3 1.5 1 1 0 1 1 1 1 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|89256548|ref|YP_513910.1| - 0.00011 22.9 0.1 0.00097 19.9 0.1 2.3 1 1 0 1 1 1 1 AAA domain AAA_13 PF13166.1 gi|89256548|ref|YP_513910.1| - 0.00048 18.7 0.3 0.00072 18.1 0.1 1.3 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|89256548|ref|YP_513910.1| - 0.00094 18.6 0.5 0.0021 17.5 0.1 1.7 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_21 PF13304.1 gi|89256548|ref|YP_513910.1| - 0.0016 18.4 1.5 0.0059 16.5 1.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|89256548|ref|YP_513910.1| - 0.006 16.4 0.0 0.0085 15.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|89256548|ref|YP_513910.1| - 0.012 15.5 0.0 0.075 12.9 0.0 2.1 1 1 1 2 2 2 0 AAA domain AAA_28 PF13521.1 gi|89256548|ref|YP_513910.1| - 0.014 15.3 0.1 0.076 12.9 0.1 2.0 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|89256548|ref|YP_513910.1| - 0.02 15.2 2.2 0.059 13.6 1.5 1.9 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|89256548|ref|YP_513910.1| - 0.03 13.7 0.0 0.064 12.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|89256548|ref|YP_513910.1| - 0.052 13.6 0.4 0.21 11.7 0.3 2.0 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|89256548|ref|YP_513910.1| - 0.068 13.4 0.3 0.15 12.3 0.2 2.0 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|89256548|ref|YP_513910.1| - 0.093 12.6 0.3 0.2 11.6 0.2 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA PF00004.24 gi|89256548|ref|YP_513910.1| - 0.12 12.5 0.9 1 9.5 0.6 2.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) UPF0051 PF01458.12 gi|89256549|ref|YP_513911.1| - 6.7e-64 215.4 0.3 8.4e-64 215.1 0.2 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) Rrf2 PF02082.15 gi|89256550|ref|YP_513912.1| - 6.9e-20 70.9 0.1 1.2e-19 70.1 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator HrcA_DNA-bdg PF03444.10 gi|89256550|ref|YP_513912.1| - 0.00057 19.2 0.0 0.00086 18.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_24 PF13412.1 gi|89256550|ref|YP_513912.1| - 0.0007 18.9 0.9 0.0031 16.8 0.0 2.3 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding TFIIE_alpha PF02002.12 gi|89256550|ref|YP_513912.1| - 0.0049 16.3 0.0 0.0093 15.4 0.0 1.6 2 0 0 2 2 2 1 TFIIE alpha subunit HTH_IclR PF09339.5 gi|89256550|ref|YP_513912.1| - 0.0052 16.3 0.0 0.0087 15.6 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|89256550|ref|YP_513912.1| - 0.0052 16.5 0.1 0.011 15.5 0.0 1.5 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_36 PF13730.1 gi|89256550|ref|YP_513912.1| - 0.0097 16.0 0.1 0.021 14.9 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.14 gi|89256550|ref|YP_513912.1| - 0.014 15.0 0.1 0.15 11.7 0.0 2.3 2 1 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB FaeA PF04703.7 gi|89256550|ref|YP_513912.1| - 0.029 14.5 0.0 0.1 12.7 0.0 1.8 2 0 0 2 2 2 0 FaeA-like protein HTH_5 PF01022.15 gi|89256550|ref|YP_513912.1| - 0.047 13.3 0.3 0.18 11.5 0.0 2.2 3 0 0 3 3 3 0 Bacterial regulatory protein, arsR family HTH_11 PF08279.7 gi|89256550|ref|YP_513912.1| - 0.093 12.3 0.1 0.19 11.3 0.1 1.6 1 0 0 1 1 1 0 HTH domain GntR PF00392.16 gi|89256550|ref|YP_513912.1| - 0.098 12.1 0.0 0.16 11.4 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family MarR PF01047.17 gi|89256550|ref|YP_513912.1| - 0.11 12.1 0.0 0.2 11.3 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_23 PF13384.1 gi|89256550|ref|YP_513912.1| - 0.12 12.0 0.0 0.24 11.0 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain RepL PF05732.6 gi|89256550|ref|YP_513912.1| - 0.13 11.4 0.1 0.21 10.7 0.1 1.4 1 1 0 1 1 1 0 Firmicute plasmid replication protein (RepL) TrkA_N PF02254.13 gi|89256551|ref|YP_513913.1| - 1.1e-39 135.0 2.7 2.8e-22 78.8 0.1 2.8 3 0 0 3 3 3 2 TrkA-N domain TrkA_C PF02080.16 gi|89256551|ref|YP_513913.1| - 7.4e-11 41.4 0.7 0.00011 21.7 0.1 2.5 2 0 0 2 2 2 2 TrkA-C domain NAD_binding_7 PF13241.1 gi|89256551|ref|YP_513913.1| - 7.8e-06 26.0 0.1 0.051 13.8 0.0 2.6 2 0 0 2 2 2 2 Putative NAD(P)-binding UDPG_MGDP_dh_N PF03721.9 gi|89256551|ref|YP_513913.1| - 0.0018 17.7 0.1 0.029 13.7 0.0 2.5 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh_C PF03720.10 gi|89256551|ref|YP_513913.1| - 0.038 14.1 0.2 0.22 11.6 0.0 2.3 2 1 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 3HCDH_N PF02737.13 gi|89256551|ref|YP_513913.1| - 0.098 12.3 0.0 1.8 8.1 0.0 2.3 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|89256551|ref|YP_513913.1| - 0.1 12.3 0.0 0.53 10.0 0.0 2.1 2 1 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AA_permease_2 PF13520.1 gi|89256552|ref|YP_513914.1| - 4.6e-66 223.1 54.7 4.6e-66 223.1 37.9 1.5 1 1 1 2 2 2 1 Amino acid permease AA_permease PF00324.16 gi|89256552|ref|YP_513914.1| - 2.3e-19 69.0 50.6 2.7e-19 68.8 35.1 1.0 1 0 0 1 1 1 1 Amino acid permease DUF3975 PF13126.1 gi|89256553|ref|YP_513915.1| - 0.59 10.3 9.1 1 9.5 6.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3975) DUF3816 PF12822.2 gi|89256553|ref|YP_513915.1| - 3.7 7.4 20.4 5.5 6.8 14.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3816) PsbJ PF01788.12 gi|89256553|ref|YP_513915.1| - 4 7.0 7.4 0.77 9.3 1.9 2.3 2 1 0 2 2 2 0 PsbJ eIF-1a PF01176.14 gi|89256554|ref|YP_513916.1| - 1.1e-27 95.1 0.2 1.3e-27 95.0 0.1 1.0 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 TOBE PF03459.12 gi|89256554|ref|YP_513916.1| - 0.063 13.3 0.0 0.11 12.6 0.0 1.4 1 1 0 1 1 1 0 TOBE domain S1 PF00575.18 gi|89256554|ref|YP_513916.1| - 0.094 12.8 0.1 0.13 12.3 0.1 1.2 1 0 0 1 1 1 0 S1 RNA binding domain TauE PF01925.14 gi|89256555|ref|YP_513917.1| - 5.4e-42 143.8 36.9 6.3e-42 143.6 25.6 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF4405 PF14358.1 gi|89256555|ref|YP_513917.1| - 0.25 11.5 0.1 0.25 11.5 0.1 3.5 3 1 0 3 3 3 0 Domain of unknown function (DUF4405) DUF1634 PF07843.6 gi|89256556|ref|YP_513918.1| - 2.3e-14 52.9 15.6 4.4e-12 45.5 10.8 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF1634) DUF4181 PF13789.1 gi|89256556|ref|YP_513918.1| - 0.0088 15.9 13.8 0.01 15.7 9.6 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4181) CD47 PF04549.9 gi|89256556|ref|YP_513918.1| - 0.096 12.6 16.4 0.1 12.6 11.4 1.1 1 0 0 1 1 1 0 CD47 transmembrane region DUF3522 PF12036.3 gi|89256556|ref|YP_513918.1| - 0.37 10.5 6.3 0.41 10.4 4.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3522) FUSC_2 PF13515.1 gi|89256556|ref|YP_513918.1| - 9 6.2 10.2 15 5.5 7.1 1.3 1 1 0 1 1 1 0 Fusaric acid resistance protein-like SRP54 PF00448.17 gi|89256557|ref|YP_513919.1| - 3e-75 251.9 3.2 6.3e-75 250.9 2.2 1.5 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.14 gi|89256557|ref|YP_513919.1| - 1.3e-31 108.9 6.1 1.3e-31 108.9 4.3 3.9 4 0 0 4 4 4 1 Signal peptide binding domain SRP54_N PF02881.14 gi|89256557|ref|YP_513919.1| - 2.7e-19 69.0 7.5 3.7e-19 68.6 2.7 3.1 3 0 0 3 3 3 1 SRP54-type protein, helical bundle domain AAA_22 PF13401.1 gi|89256557|ref|YP_513919.1| - 7.3e-08 32.6 0.5 4.1e-07 30.2 0.0 2.3 3 0 0 3 3 2 1 AAA domain Zeta_toxin PF06414.7 gi|89256557|ref|YP_513919.1| - 7.7e-08 31.6 0.1 1.5e-07 30.7 0.1 1.5 1 0 0 1 1 1 1 Zeta toxin CbiA PF01656.18 gi|89256557|ref|YP_513919.1| - 1.7e-06 27.5 3.9 5e-06 26.0 1.8 2.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain cobW PF02492.14 gi|89256557|ref|YP_513919.1| - 0.00019 20.9 1.2 0.0005 19.5 0.8 1.7 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.9 gi|89256557|ref|YP_513919.1| - 0.0003 20.5 0.1 0.0011 18.7 0.1 1.9 2 0 0 2 2 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.1 gi|89256557|ref|YP_513919.1| - 0.00032 20.6 0.0 0.00069 19.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_31 PF13614.1 gi|89256557|ref|YP_513919.1| - 0.00042 20.2 0.3 0.012 15.5 0.0 2.6 1 1 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|89256557|ref|YP_513919.1| - 0.00045 20.2 0.0 0.001 19.0 0.0 1.7 1 0 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.1 gi|89256557|ref|YP_513919.1| - 0.00053 19.4 0.1 0.0012 18.3 0.1 1.5 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|89256557|ref|YP_513919.1| - 0.00061 19.4 0.3 0.0014 18.2 0.2 1.6 1 0 0 1 1 1 1 AAA domain 6PF2K PF01591.13 gi|89256557|ref|YP_513919.1| - 0.0007 18.7 0.0 0.0015 17.6 0.0 1.5 1 0 0 1 1 1 1 6-phosphofructo-2-kinase APS_kinase PF01583.15 gi|89256557|ref|YP_513919.1| - 0.00082 19.0 0.0 0.0039 16.8 0.0 2.2 2 0 0 2 2 2 1 Adenylylsulphate kinase Thymidylate_kin PF02223.12 gi|89256557|ref|YP_513919.1| - 0.0014 18.0 0.1 0.0056 16.0 0.1 2.0 1 0 0 1 1 1 1 Thymidylate kinase AAA_17 PF13207.1 gi|89256557|ref|YP_513919.1| - 0.0034 18.1 0.0 0.0097 16.7 0.0 1.8 2 0 0 2 2 1 1 AAA domain KTI12 PF08433.5 gi|89256557|ref|YP_513919.1| - 0.0034 16.6 0.9 0.0079 15.4 0.0 2.0 2 0 0 2 2 2 1 Chromatin associated protein KTI12 ArsA_ATPase PF02374.10 gi|89256557|ref|YP_513919.1| - 0.0047 16.0 7.8 0.0056 15.7 0.1 3.3 2 1 0 3 3 3 1 Anion-transporting ATPase DUF2075 PF09848.4 gi|89256557|ref|YP_513919.1| - 0.0071 15.3 1.8 0.0082 15.1 0.1 2.0 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) AAA_28 PF13521.1 gi|89256557|ref|YP_513919.1| - 0.025 14.5 0.0 0.046 13.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|89256557|ref|YP_513919.1| - 0.027 14.1 0.0 0.051 13.2 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA PF00004.24 gi|89256557|ref|YP_513919.1| - 0.027 14.6 0.5 0.027 14.6 0.4 2.7 3 1 0 3 3 2 0 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.1 gi|89256557|ref|YP_513919.1| - 0.034 14.0 0.2 0.1 12.4 0.1 1.9 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|89256557|ref|YP_513919.1| - 0.065 12.9 0.0 0.15 11.7 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain UPF0079 PF02367.12 gi|89256557|ref|YP_513919.1| - 0.079 12.5 0.3 0.32 10.6 0.2 2.1 1 1 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 KAP_NTPase PF07693.9 gi|89256557|ref|YP_513919.1| - 0.11 11.4 6.0 0.042 12.8 1.1 2.5 1 1 1 2 2 2 0 KAP family P-loop domain DAHP_synth_1 PF00793.15 gi|89256558|ref|YP_513920.1| - 1.8e-89 299.0 0.5 2.2e-89 298.7 0.3 1.1 1 0 0 1 1 1 1 DAHP synthetase I family PGM_PMM_II PF02879.11 gi|89256558|ref|YP_513920.1| - 0.12 12.6 1.4 36 4.7 0.0 3.6 4 1 1 5 5 5 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DDE_3 PF13358.1 gi|89256559|ref|YP_513921.1| - 5.3e-31 107.3 0.0 9e-31 106.5 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.11 gi|89256559|ref|YP_513921.1| - 1.6e-07 31.0 0.2 1.1e-06 28.3 0.1 2.1 2 0 0 2 2 2 1 Transposase DDE_1 PF03184.14 gi|89256559|ref|YP_513921.1| - 6e-07 28.8 0.1 9.5e-07 28.1 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_28 PF13518.1 gi|89256559|ref|YP_513921.1| - 0.00058 19.8 0.0 0.0018 18.2 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain rve PF00665.21 gi|89256559|ref|YP_513921.1| - 0.00072 19.6 0.0 0.0013 18.7 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.1 gi|89256559|ref|YP_513921.1| - 0.0087 15.6 0.0 0.029 14.0 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.1 gi|89256559|ref|YP_513921.1| - 0.02 15.0 0.0 0.032 14.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix DDE_Tnp_ISAZ013 PF07592.6 gi|89256559|ref|YP_513921.1| - 0.041 12.6 0.7 0.32 9.7 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain CENP-B_N PF04218.8 gi|89256559|ref|YP_513921.1| - 0.069 12.5 0.0 0.7 9.3 0.0 2.5 3 0 0 3 3 3 0 CENP-B N-terminal DNA-binding domain DJ-1_PfpI PF01965.19 gi|89256560|ref|YP_513922.1| - 1.6e-05 24.4 0.0 1.7e-05 24.3 0.0 1.1 1 0 0 1 1 1 1 DJ-1/PfpI family AstE_AspA PF04952.9 gi|89256561|ref|YP_513923.1| - 6.4e-05 21.9 0.0 6.6e-05 21.9 0.0 1.1 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Peptidase_M14 PF00246.19 gi|89256561|ref|YP_513923.1| - 0.0093 15.6 0.0 0.013 15.0 0.0 1.3 1 1 0 1 1 1 1 Zinc carboxypeptidase Sdh5 PF03937.11 gi|89256561|ref|YP_513923.1| - 0.017 14.8 0.3 0.029 14.0 0.2 1.3 1 0 0 1 1 1 0 Flavinator of succinate dehydrogenase Annexin PF00191.15 gi|89256561|ref|YP_513923.1| - 0.027 14.3 0.1 0.052 13.4 0.1 1.5 1 0 0 1 1 1 0 Annexin Exo_endo_phos PF03372.18 gi|89256562|ref|YP_513924.1| - 6.3e-26 91.8 0.2 7.2e-26 91.6 0.2 1.0 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Exo_endo_phos_2 PF14529.1 gi|89256562|ref|YP_513924.1| - 5.2e-13 48.6 0.1 8.1e-13 48.0 0.1 1.3 1 0 0 1 1 1 1 Endonuclease-reverse transcriptase HTH_Tnp_IS630 PF01710.11 gi|89256562|ref|YP_513924.1| - 0.06 13.0 0.5 5.9 6.5 0.0 2.4 2 0 0 2 2 2 0 Transposase HCaRG PF07258.9 gi|89256562|ref|YP_513924.1| - 0.15 11.5 0.5 1.3 8.5 0.1 2.5 2 1 0 2 2 2 0 HCaRG protein adh_short_C2 PF13561.1 gi|89256563|ref|YP_513925.1| - 7.2e-22 78.3 0.0 1.1e-21 77.7 0.0 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|89256563|ref|YP_513925.1| - 2.9e-19 69.5 0.1 3.9e-18 65.9 0.1 2.0 1 1 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|89256563|ref|YP_513925.1| - 0.00084 19.0 0.4 0.29 10.7 0.0 2.1 2 0 0 2 2 2 2 KR domain Epimerase PF01370.16 gi|89256563|ref|YP_513925.1| - 0.0017 17.7 0.0 0.0029 17.0 0.0 1.3 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Eno-Rase_NADH_b PF12242.3 gi|89256563|ref|YP_513925.1| - 0.019 14.7 0.1 0.078 12.7 0.1 2.0 2 0 0 2 2 2 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase NAD_binding_10 PF13460.1 gi|89256563|ref|YP_513925.1| - 0.051 13.5 0.0 0.069 13.1 0.0 1.3 1 0 0 1 1 1 0 NADH(P)-binding AAA_33 PF13671.1 gi|89256564|ref|YP_513926.1| - 1.9e-12 47.2 0.0 2.3e-12 47.0 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|89256564|ref|YP_513926.1| - 3.9e-08 34.1 0.0 1.1e-07 32.6 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|89256564|ref|YP_513926.1| - 1.6e-07 31.7 0.0 3.1e-07 30.7 0.0 1.5 1 1 0 1 1 1 1 AAA domain KTI12 PF08433.5 gi|89256564|ref|YP_513926.1| - 6.1e-07 28.9 0.1 7.9e-07 28.5 0.1 1.1 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_14 PF13173.1 gi|89256564|ref|YP_513926.1| - 4.1e-05 23.4 0.1 7.6e-05 22.6 0.1 1.4 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|89256564|ref|YP_513926.1| - 0.00013 22.2 0.0 0.00018 21.6 0.0 1.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) 6PF2K PF01591.13 gi|89256564|ref|YP_513926.1| - 0.00045 19.3 1.6 0.076 12.0 0.3 2.1 1 1 1 2 2 2 2 6-phosphofructo-2-kinase AAA_22 PF13401.1 gi|89256564|ref|YP_513926.1| - 0.0007 19.7 0.0 0.0015 18.6 0.0 1.7 1 1 0 1 1 1 1 AAA domain Parvo_NS1 PF01057.12 gi|89256564|ref|YP_513926.1| - 0.0016 17.3 0.2 0.0029 16.5 0.1 1.3 1 1 0 1 1 1 1 Parvovirus non-structural protein NS1 Zeta_toxin PF06414.7 gi|89256564|ref|YP_513926.1| - 0.0025 16.9 0.0 0.024 13.7 0.0 2.0 1 1 0 1 1 1 1 Zeta toxin AAA_5 PF07728.9 gi|89256564|ref|YP_513926.1| - 0.0032 17.2 0.1 0.0074 16.0 0.1 1.9 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_24 PF13479.1 gi|89256564|ref|YP_513926.1| - 0.0035 16.9 0.4 0.008 15.7 0.2 1.9 1 1 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|89256564|ref|YP_513926.1| - 0.0043 16.7 0.0 0.01 15.4 0.0 1.7 1 1 0 1 1 1 1 NACHT domain AAA_28 PF13521.1 gi|89256564|ref|YP_513926.1| - 0.0045 16.9 0.0 0.0067 16.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_31 PF13614.1 gi|89256564|ref|YP_513926.1| - 0.0049 16.8 0.0 0.0082 16.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain SRP54 PF00448.17 gi|89256564|ref|YP_513926.1| - 0.012 15.1 0.1 0.18 11.1 0.0 2.0 1 1 1 2 2 2 0 SRP54-type protein, GTPase domain SKI PF01202.17 gi|89256564|ref|YP_513926.1| - 0.015 15.1 0.2 0.096 12.5 0.1 1.9 1 1 0 1 1 1 0 Shikimate kinase Mg_chelatase PF01078.16 gi|89256564|ref|YP_513926.1| - 0.017 14.3 0.0 0.027 13.6 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.17 gi|89256564|ref|YP_513926.1| - 0.019 15.1 0.1 0.039 14.1 0.1 1.7 1 1 0 1 1 1 0 RNA helicase AAA_16 PF13191.1 gi|89256564|ref|YP_513926.1| - 0.019 14.9 0.0 0.024 14.6 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain PduV-EutP PF10662.4 gi|89256564|ref|YP_513926.1| - 0.025 14.0 0.6 6.1 6.3 0.0 2.3 3 0 0 3 3 2 0 Ethanolamine utilisation - propanediol utilisation AAA_3 PF07726.6 gi|89256564|ref|YP_513926.1| - 0.03 13.9 0.0 0.055 13.0 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) APS_kinase PF01583.15 gi|89256564|ref|YP_513926.1| - 0.038 13.6 0.0 0.054 13.1 0.0 1.3 1 1 0 1 1 1 0 Adenylylsulphate kinase AAA_25 PF13481.1 gi|89256564|ref|YP_513926.1| - 0.039 13.3 0.0 0.052 12.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain RuvB_N PF05496.7 gi|89256564|ref|YP_513926.1| - 0.063 12.3 0.0 0.19 10.7 0.0 1.7 2 0 0 2 2 2 0 Holliday junction DNA helicase ruvB N-terminus NTPase_1 PF03266.10 gi|89256564|ref|YP_513926.1| - 0.07 12.8 0.0 0.11 12.2 0.0 1.5 1 0 0 1 1 1 0 NTPase 2_5_RNA_ligase2 PF13563.1 gi|89256565|ref|YP_513927.1| - 4.5e-23 81.6 0.0 5.8e-23 81.2 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily LigT_PEase PF02834.11 gi|89256565|ref|YP_513927.1| - 0.00075 19.4 0.1 0.01 15.7 0.0 2.4 2 1 0 2 2 2 1 LigT like Phosphoesterase DUF1045 PF06299.7 gi|89256565|ref|YP_513927.1| - 0.001 18.7 0.0 0.0024 17.5 0.0 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF1045) CPDase PF07823.6 gi|89256565|ref|YP_513927.1| - 0.014 14.8 0.2 0.017 14.5 0.2 1.3 1 0 0 1 1 1 0 Cyclic phosphodiesterase-like protein Pyr_redox_dim PF02852.17 gi|89256566|ref|YP_513928.1| - 2.9e-36 123.8 0.1 5.9e-36 122.8 0.1 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_2 PF07992.9 gi|89256566|ref|YP_513928.1| - 2e-33 115.9 0.6 2.7e-33 115.5 0.4 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|89256566|ref|YP_513928.1| - 2.9e-18 66.0 5.2 3.4e-16 59.3 0.2 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|89256566|ref|YP_513928.1| - 8.9e-12 45.5 0.2 3.4e-06 27.2 0.1 2.7 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|89256566|ref|YP_513928.1| - 8.1e-07 28.4 0.6 8.1e-07 28.4 0.4 1.6 2 0 0 2 2 2 1 FAD dependent oxidoreductase K_oxygenase PF13434.1 gi|89256566|ref|YP_513928.1| - 5.9e-06 25.4 0.1 0.0032 16.4 0.0 2.2 1 1 1 2 2 2 2 L-lysine 6-monooxygenase (NADPH-requiring) NAD_Gly3P_dh_N PF01210.18 gi|89256566|ref|YP_513928.1| - 1.1e-05 25.1 1.2 0.00015 21.5 0.1 2.3 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DAO PF01266.19 gi|89256566|ref|YP_513928.1| - 1.1e-05 24.4 6.9 0.0052 15.7 0.3 3.3 4 0 0 4 4 4 2 FAD dependent oxidoreductase 3HCDH_N PF02737.13 gi|89256566|ref|YP_513928.1| - 0.00067 19.3 0.1 0.00067 19.3 0.1 2.2 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_8 PF13450.1 gi|89256566|ref|YP_513928.1| - 0.00069 19.5 3.1 0.0081 16.1 0.4 2.7 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.17 gi|89256566|ref|YP_513928.1| - 0.00086 18.2 0.8 0.00086 18.2 0.5 2.6 2 1 0 2 2 2 1 Glucose inhibited division protein A Thi4 PF01946.12 gi|89256566|ref|YP_513928.1| - 0.0016 17.6 0.7 0.0096 15.0 0.1 2.2 2 0 0 2 2 2 1 Thi4 family FAD_binding_2 PF00890.19 gi|89256566|ref|YP_513928.1| - 0.0037 16.1 2.3 0.0037 16.1 1.6 1.9 2 0 0 2 2 2 1 FAD binding domain FAD_binding_3 PF01494.14 gi|89256566|ref|YP_513928.1| - 0.0042 16.1 1.0 0.15 11.0 0.0 2.3 2 0 0 2 2 2 1 FAD binding domain HI0933_like PF03486.9 gi|89256566|ref|YP_513928.1| - 0.01 14.3 9.3 0.014 13.8 0.7 2.8 2 1 1 3 3 3 0 HI0933-like protein 2-Hacid_dh_C PF02826.14 gi|89256566|ref|YP_513928.1| - 0.02 14.0 5.2 0.23 10.5 0.2 3.3 3 1 1 4 4 3 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|89256566|ref|YP_513928.1| - 0.029 14.5 0.4 0.28 11.4 0.0 2.2 2 0 0 2 2 2 0 Putative NAD(P)-binding NAD_binding_10 PF13460.1 gi|89256566|ref|YP_513928.1| - 0.047 13.6 0.8 5.3 7.0 0.3 2.7 2 1 0 2 2 2 0 NADH(P)-binding Shikimate_DH PF01488.15 gi|89256566|ref|YP_513928.1| - 0.069 13.2 0.0 0.15 12.1 0.0 1.6 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase NAD_binding_9 PF13454.1 gi|89256566|ref|YP_513928.1| - 0.2 11.4 0.8 38 4.0 0.0 3.2 3 0 0 3 3 3 0 FAD-NAD(P)-binding UDPG_MGDP_dh_N PF03721.9 gi|89256566|ref|YP_513928.1| - 4.9 6.5 7.7 2 7.7 2.8 2.2 2 1 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain YbjQ_1 PF01906.12 gi|89256567|ref|YP_513929.1| - 1e-31 109.4 1.6 1.1e-31 109.3 1.1 1.0 1 0 0 1 1 1 1 Putative heavy-metal-binding DUF4156 PF13698.1 gi|89256567|ref|YP_513929.1| - 0.0038 17.0 0.1 0.0051 16.6 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4156) DDE_Tnp_1_2 PF13586.1 gi|89256568|ref|YP_513930.1| - 5.3e-16 58.5 0.2 1.5e-15 57.1 0.1 1.8 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|89256568|ref|YP_513930.1| - 3e-13 49.8 1.0 1e-12 48.0 0.7 1.7 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|89256568|ref|YP_513930.1| - 2.5e-09 37.0 0.1 3.4e-09 36.6 0.1 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF4096 PF13340.1 gi|89256568|ref|YP_513930.1| - 0.00065 19.5 0.0 0.0013 18.5 0.0 1.5 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) PTR2 PF00854.16 gi|89256569|ref|YP_513931.1| - 6.9e-41 140.2 31.5 6.9e-41 140.2 21.8 1.7 2 1 0 2 2 2 1 POT family MFS_1 PF07690.11 gi|89256569|ref|YP_513931.1| - 1.5e-14 53.5 63.3 2.5e-09 36.3 21.5 2.5 1 1 1 2 2 2 2 Major Facilitator Superfamily DEAD PF00270.24 gi|89256570|ref|YP_513932.1| - 1e-48 165.0 3.2 1.7e-47 161.0 0.3 2.7 2 1 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|89256570|ref|YP_513932.1| - 2.4e-24 84.9 0.1 6.3e-24 83.6 0.0 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain AAA_19 PF13245.1 gi|89256570|ref|YP_513932.1| - 1.9e-05 24.3 0.1 0.0053 16.4 0.1 2.7 2 0 0 2 2 2 2 Part of AAA domain AAA_30 PF13604.1 gi|89256570|ref|YP_513932.1| - 0.00013 21.6 2.3 0.1 12.1 0.1 2.8 2 1 0 2 2 2 2 AAA domain MerR-DNA-bind PF09278.6 gi|89256570|ref|YP_513932.1| - 0.0063 16.8 0.1 0.029 14.7 0.1 2.2 1 0 0 1 1 1 1 MerR, DNA binding Flavi_DEAD PF07652.9 gi|89256570|ref|YP_513932.1| - 0.011 15.4 0.1 0.037 13.7 0.0 2.0 2 0 0 2 2 2 0 Flavivirus DEAD domain AAA_22 PF13401.1 gi|89256570|ref|YP_513932.1| - 0.23 11.5 4.5 0.6 10.2 0.6 3.3 2 2 1 3 3 3 0 AAA domain GTP_cyclohydroI PF01227.17 gi|89256571|ref|YP_513933.1| - 7.7e-49 165.4 0.0 9.5e-49 165.0 0.0 1.1 1 0 0 1 1 1 1 GTP cyclohydrolase I Aldo_ket_red PF00248.16 gi|89256572|ref|YP_513934.1| - 5.7e-66 222.2 0.1 6.4e-66 222.0 0.1 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family GATase PF00117.23 gi|89256573|ref|YP_513935.1| - 7.3e-46 156.0 0.1 8.1e-46 155.8 0.1 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|89256573|ref|YP_513935.1| - 2.5e-11 43.4 0.1 4.9e-11 42.4 0.0 1.5 1 0 0 1 1 1 1 Peptidase C26 DLH PF01738.13 gi|89256573|ref|YP_513935.1| - 0.016 14.4 0.1 0.022 14.0 0.0 1.2 1 0 0 1 1 1 0 Dienelactone hydrolase family Chorismate_bind PF00425.13 gi|89256574|ref|YP_513936.1| - 2.6e-80 269.4 0.0 3.7e-80 268.9 0.0 1.2 1 0 0 1 1 1 1 chorismate binding enzyme Aminotran_4 PF01063.14 gi|89256574|ref|YP_513936.1| - 3.4e-37 128.1 0.1 8e-37 126.9 0.0 1.6 1 0 0 1 1 1 1 Aminotransferase class IV Ribosomal_S17 PF00366.15 gi|89256574|ref|YP_513936.1| - 0.25 11.4 1.8 0.3 11.1 0.1 2.0 2 0 0 2 2 2 0 Ribosomal protein S17 AMP-binding PF00501.23 gi|89256575|ref|YP_513937.1| - 2.3e-28 98.7 0.0 5.4e-28 97.5 0.0 1.6 1 1 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|89256575|ref|YP_513937.1| - 5.7e-11 43.1 0.0 1.1e-10 42.3 0.0 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain FolB PF02152.13 gi|89256576|ref|YP_513938.1| - 1.4e-16 60.6 0.1 1.5e-16 60.5 0.1 1.0 1 0 0 1 1 1 1 Dihydroneopterin aldolase Pterin_bind PF00809.17 gi|89256577|ref|YP_513939.1| - 2.8e-42 144.4 0.4 4e-42 143.9 0.3 1.2 1 0 0 1 1 1 1 Pterin binding enzyme HPPK PF01288.15 gi|89256577|ref|YP_513939.1| - 7.7e-34 116.1 1.3 2e-33 114.8 0.0 2.3 2 0 0 2 2 2 1 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AP_endonuc_2 PF01261.19 gi|89256577|ref|YP_513939.1| - 0.017 14.4 0.0 0.063 12.5 0.0 1.9 2 0 0 2 2 2 0 Xylose isomerase-like TIM barrel Abhydrolase_3 PF07859.8 gi|89256578|ref|YP_513940.1| - 7.6e-57 192.2 0.0 9e-57 192.0 0.0 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold DUF2424 PF10340.4 gi|89256578|ref|YP_513940.1| - 2e-12 46.4 0.2 2.5e-12 46.1 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2424) Peptidase_S9 PF00326.16 gi|89256578|ref|YP_513940.1| - 2e-08 33.7 0.1 7e-08 31.9 0.1 1.8 1 1 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_5 PF12695.2 gi|89256578|ref|YP_513940.1| - 2.8e-06 27.1 0.0 3.7e-06 26.7 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family COesterase PF00135.23 gi|89256578|ref|YP_513940.1| - 2.7e-05 23.0 0.0 0.0018 17.0 0.0 2.2 2 0 0 2 2 2 2 Carboxylesterase family Hydrolase_4 PF12146.3 gi|89256578|ref|YP_513940.1| - 0.00014 21.6 0.0 0.00037 20.2 0.0 1.7 1 0 0 1 1 1 1 Putative lysophospholipase PAE PF03283.8 gi|89256578|ref|YP_513940.1| - 0.008 14.8 0.0 0.64 8.5 0.0 2.1 2 0 0 2 2 2 2 Pectinacetylesterase DUF4442 PF14539.1 gi|89256579|ref|YP_513941.1| - 1.4e-10 41.2 0.0 1.8e-10 40.9 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) YiiD_Cterm PF09500.5 gi|89256579|ref|YP_513941.1| - 0.00022 20.8 0.2 0.0033 16.9 0.1 2.0 1 1 0 1 1 1 1 Putative thioesterase (yiiD_Cterm) Aminotran_3 PF00202.16 gi|89256580|ref|YP_513942.1| - 1.8e-88 296.6 0.0 2.1e-88 296.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Beta_elim_lyase PF01212.16 gi|89256580|ref|YP_513942.1| - 0.00032 19.9 0.0 0.0015 17.7 0.0 2.0 1 1 0 1 1 1 1 Beta-eliminating lyase Cas_APE2256 PF09651.5 gi|89256580|ref|YP_513942.1| - 0.11 12.2 0.0 0.24 11.1 0.0 1.5 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_APE2256) BATS PF06968.8 gi|89256581|ref|YP_513943.1| - 7e-26 89.8 0.0 1.8e-25 88.6 0.0 1.7 2 0 0 2 2 2 1 Biotin and Thiamin Synthesis associated domain Radical_SAM PF04055.16 gi|89256581|ref|YP_513943.1| - 2e-16 60.6 0.2 3e-16 60.0 0.2 1.3 1 0 0 1 1 1 1 Radical SAM superfamily SPOUT_MTase PF02590.12 gi|89256581|ref|YP_513943.1| - 0.057 13.1 0.0 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 Predicted SPOUT methyltransferase DUF1810 PF08837.6 gi|89256581|ref|YP_513943.1| - 0.061 12.9 0.0 6.3 6.3 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1810) Aminotran_1_2 PF00155.16 gi|89256582|ref|YP_513944.1| - 3.6e-40 138.0 0.1 4e-40 137.8 0.1 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|89256582|ref|YP_513944.1| - 0.001 18.2 0.0 0.0033 16.6 0.0 1.9 1 1 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|89256582|ref|YP_513944.1| - 0.011 14.8 0.0 0.052 12.5 0.0 2.0 2 0 0 2 2 2 0 DegT/DnrJ/EryC1/StrS aminotransferase family Methyltransf_23 PF13489.1 gi|89256583|ref|YP_513945.1| - 1.2e-05 25.0 0.1 2.4e-05 24.0 0.1 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|89256583|ref|YP_513945.1| - 0.0008 19.8 0.1 0.0029 18.0 0.0 1.9 2 1 1 3 3 3 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|89256583|ref|YP_513945.1| - 0.0009 19.6 0.6 0.0027 18.1 0.2 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|89256583|ref|YP_513945.1| - 0.071 12.6 3.2 0.1 12.2 2.2 1.4 1 1 0 1 1 1 0 Methyltransferase domain AAA_26 PF13500.1 gi|89256584|ref|YP_513946.1| - 1.2e-36 126.1 0.1 1.5e-36 125.9 0.1 1.0 1 0 0 1 1 1 1 AAA domain CbiA PF01656.18 gi|89256584|ref|YP_513946.1| - 1.1e-09 38.0 0.2 1.5e-09 37.5 0.1 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF1611 PF07755.6 gi|89256584|ref|YP_513946.1| - 0.00014 20.6 0.0 0.17 10.5 0.0 2.6 1 1 0 2 2 2 2 Protein of unknown function (DUF1611) MobB PF03205.9 gi|89256584|ref|YP_513946.1| - 0.00028 20.6 0.0 0.00063 19.4 0.0 1.5 1 1 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B BPL_LplA_LipB PF03099.14 gi|89256585|ref|YP_513947.1| - 2.9e-15 56.3 0.0 5e-15 55.6 0.0 1.4 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family HTH_11 PF08279.7 gi|89256585|ref|YP_513947.1| - 7.5e-11 41.5 0.4 2.1e-10 40.0 0.3 1.8 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.1 gi|89256585|ref|YP_513947.1| - 0.0001 21.6 3.0 0.00027 20.2 0.3 2.9 2 1 0 2 2 2 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.15 gi|89256585|ref|YP_513947.1| - 0.00046 20.2 0.0 0.00095 19.2 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator MarR_2 PF12802.2 gi|89256585|ref|YP_513947.1| - 0.0012 18.4 0.0 0.0027 17.3 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_Mga PF08280.6 gi|89256585|ref|YP_513947.1| - 0.0015 18.2 0.4 0.0096 15.6 0.1 2.4 2 0 0 2 2 2 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_5 PF01022.15 gi|89256585|ref|YP_513947.1| - 0.0017 18.0 0.0 0.0033 17.0 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.14 gi|89256585|ref|YP_513947.1| - 0.0022 17.9 0.0 0.05 13.5 0.0 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_34 PF13601.1 gi|89256585|ref|YP_513947.1| - 0.0024 17.8 0.3 0.0069 16.3 0.1 1.9 2 0 0 2 2 2 1 Winged helix DNA-binding domain Mga PF05043.8 gi|89256585|ref|YP_513947.1| - 0.0036 17.5 1.5 0.0052 17.0 0.1 2.1 2 0 0 2 2 1 1 Mga helix-turn-helix domain MarR PF01047.17 gi|89256585|ref|YP_513947.1| - 0.0064 16.1 0.0 0.018 14.7 0.0 1.8 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|89256585|ref|YP_513947.1| - 0.014 15.2 0.0 0.024 14.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|89256585|ref|YP_513947.1| - 0.024 14.4 0.0 0.051 13.3 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_1 PF00126.22 gi|89256585|ref|YP_513947.1| - 0.025 14.2 0.0 0.046 13.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_27 PF13463.1 gi|89256585|ref|YP_513947.1| - 0.027 14.7 0.0 0.05 13.9 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_10 PF04967.7 gi|89256585|ref|YP_513947.1| - 0.043 13.4 0.0 0.11 12.0 0.0 1.7 1 0 0 1 1 1 0 HTH DNA binding domain Bro-N PF02498.12 gi|89256585|ref|YP_513947.1| - 0.056 13.7 0.3 0.26 11.5 0.0 2.2 2 0 0 2 2 2 0 BRO family, N-terminal domain Cro PF09048.5 gi|89256585|ref|YP_513947.1| - 0.084 12.5 0.0 0.2 11.2 0.0 1.6 1 0 0 1 1 1 0 Cro HTH_23 PF13384.1 gi|89256585|ref|YP_513947.1| - 0.088 12.4 0.0 0.24 11.1 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain DDRGK PF09756.4 gi|89256585|ref|YP_513947.1| - 0.18 11.1 1.9 0.16 11.3 0.2 1.7 2 0 0 2 2 2 0 DDRGK domain ROK PF00480.15 gi|89256586|ref|YP_513948.1| - 3.9e-27 95.2 0.6 6e-27 94.6 0.4 1.2 1 0 0 1 1 1 1 ROK family IF2_N PF04760.10 gi|89256586|ref|YP_513948.1| - 0.046 13.3 0.0 0.16 11.6 0.0 2.0 1 1 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region DUF960 PF06124.6 gi|89256586|ref|YP_513948.1| - 0.085 13.1 0.1 0.17 12.1 0.1 1.5 1 0 0 1 1 1 0 Staphylococcal protein of unknown function (DUF960) MFS_1 PF07690.11 gi|89256587|ref|YP_513949.1| - 3.5e-26 91.7 43.7 3.5e-26 91.7 30.3 2.1 1 1 1 2 2 2 1 Major Facilitator Superfamily ADC PF06314.6 gi|89256588|ref|YP_513950.1| - 3e-56 190.3 0.0 3.4e-56 190.2 0.0 1.0 1 0 0 1 1 1 1 Acetoacetate decarboxylase (ADC) adh_short PF00106.20 gi|89256589|ref|YP_513951.1| - 5.3e-07 29.6 0.4 5.7e-07 29.6 0.3 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|89256589|ref|YP_513951.1| - 0.009 15.6 1.6 0.016 14.9 1.1 1.4 1 1 0 1 1 1 1 KR domain adh_short_C2 PF13561.1 gi|89256589|ref|YP_513951.1| - 0.013 15.2 0.1 0.015 15.1 0.1 1.0 1 0 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase 3HCDH_N PF02737.13 gi|89256589|ref|YP_513951.1| - 0.018 14.7 0.2 0.019 14.6 0.1 1.1 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|89256589|ref|YP_513951.1| - 0.072 12.4 0.0 0.076 12.3 0.0 1.1 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Ldh_1_N PF00056.18 gi|89256589|ref|YP_513951.1| - 0.073 12.8 0.5 0.074 12.8 0.3 1.0 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain RmlD_sub_bind PF04321.12 gi|89256589|ref|YP_513951.1| - 0.11 11.3 0.1 0.12 11.2 0.1 1.0 1 0 0 1 1 1 0 RmlD substrate binding domain Eno-Rase_NADH_b PF12242.3 gi|89256589|ref|YP_513951.1| - 0.12 12.2 0.1 0.15 11.8 0.1 1.2 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase adh_short PF00106.20 gi|89256590|ref|YP_513952.1| - 6.8e-20 71.6 0.1 9e-20 71.2 0.1 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|89256590|ref|YP_513952.1| - 4.9e-13 49.3 0.3 6.4e-13 49.0 0.2 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|89256590|ref|YP_513952.1| - 4.5e-09 36.2 0.1 6e-09 35.8 0.1 1.1 1 0 0 1 1 1 1 KR domain DUF1776 PF08643.5 gi|89256590|ref|YP_513952.1| - 0.014 14.5 0.0 0.018 14.2 0.0 1.1 1 0 0 1 1 1 0 Fungal family of unknown function (DUF1776) DAGAT PF03982.8 gi|89256590|ref|YP_513952.1| - 0.091 11.4 0.1 0.12 11.0 0.1 1.1 1 0 0 1 1 1 0 Diacylglycerol acyltransferase Glyco_hydro_3 PF00933.16 gi|89256591|ref|YP_513953.1| - 6.8e-62 209.1 0.0 9.4e-62 208.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain TPP_enzyme_M PF00205.17 gi|89256591|ref|YP_513953.1| - 0.037 13.7 0.0 0.077 12.7 0.0 1.5 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, central domain Aminotran_3 PF00202.16 gi|89256592|ref|YP_513954.1| - 1.7e-72 244.1 0.0 2e-72 243.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.16 gi|89256592|ref|YP_513954.1| - 0.00018 20.5 0.0 0.00031 19.8 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II GSH-S_ATP PF02955.11 gi|89256593|ref|YP_513955.1| - 2e-68 228.9 0.4 2.8e-68 228.4 0.3 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain GSH-S_N PF02951.9 gi|89256593|ref|YP_513955.1| - 7.1e-40 135.5 0.0 1.7e-39 134.3 0.0 1.7 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, N-terminal domain RimK PF08443.6 gi|89256593|ref|YP_513955.1| - 3.6e-17 62.4 1.1 5.1e-17 61.9 0.8 1.2 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATPgrasp_YheCD PF14398.1 gi|89256593|ref|YP_513955.1| - 6.1e-09 35.0 0.4 1.9e-08 33.4 0.1 1.8 2 0 0 2 2 2 1 YheC/D like ATP-grasp ATP-grasp_3 PF02655.9 gi|89256593|ref|YP_513955.1| - 1.3e-06 28.3 0.1 3e-06 27.1 0.1 1.5 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|89256593|ref|YP_513955.1| - 5e-06 25.4 0.0 9.6e-06 24.5 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATPgrasp_ST PF14397.1 gi|89256593|ref|YP_513955.1| - 0.0015 17.7 0.1 0.003 16.6 0.0 1.5 1 0 0 1 1 1 1 Sugar-transfer associated ATP-grasp ATP-grasp_4 PF13535.1 gi|89256593|ref|YP_513955.1| - 0.015 15.0 0.0 0.024 14.3 0.0 1.4 1 0 0 1 1 1 0 ATP-grasp domain Formyl_trans_N PF00551.14 gi|89256594|ref|YP_513956.1| - 3.8e-45 153.6 0.1 5.4e-45 153.1 0.0 1.2 1 0 0 1 1 1 1 Formyl transferase Formyl_trans_C PF02911.13 gi|89256594|ref|YP_513956.1| - 5.8e-26 90.5 0.0 9.8e-26 89.7 0.0 1.4 1 0 0 1 1 1 1 Formyl transferase, C-terminal domain MutL PF13941.1 gi|89256594|ref|YP_513956.1| - 0.063 11.5 0.0 0.22 9.7 0.0 1.8 2 0 0 2 2 2 0 MutL protein DUF2757 PF10955.3 gi|89256595|ref|YP_513957.1| - 0.0095 16.1 0.1 0.013 15.6 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2757) ABC2_membrane_3 PF12698.2 gi|89256595|ref|YP_513957.1| - 0.046 12.7 0.0 0.052 12.5 0.0 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein FtsH_ext PF06480.10 gi|89256595|ref|YP_513957.1| - 0.1 12.7 0.0 0.15 12.2 0.0 1.3 1 0 0 1 1 1 0 FtsH Extracellular UPF0020 PF01170.13 gi|89256596|ref|YP_513958.1| - 1.1e-42 145.5 0.0 1.3e-40 138.9 0.0 2.3 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 Methyltransf_26 PF13659.1 gi|89256596|ref|YP_513958.1| - 5.8e-22 77.9 0.0 2.5e-13 50.0 0.0 2.4 2 0 0 2 2 2 2 Methyltransferase domain Methyltrans_SAM PF10672.4 gi|89256596|ref|YP_513958.1| - 4.8e-21 74.8 0.2 8.2e-21 74.0 0.2 1.3 1 0 0 1 1 1 1 S-adenosylmethionine-dependent methyltransferase Methyltransf_31 PF13847.1 gi|89256596|ref|YP_513958.1| - 1.7e-13 50.4 5.4 7.3e-07 28.8 0.3 3.8 3 1 0 3 3 3 2 Methyltransferase domain Methyltransf_18 PF12847.2 gi|89256596|ref|YP_513958.1| - 4.1e-11 43.4 1.9 0.00014 22.4 0.0 4.3 3 1 0 4 4 4 2 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|89256596|ref|YP_513958.1| - 1.2e-10 41.0 0.1 2.9e-06 26.8 0.0 3.7 3 0 0 3 3 3 2 Conserved hypothetical protein 95 MTS PF05175.9 gi|89256596|ref|YP_513958.1| - 1.2e-10 40.9 0.1 7.7e-05 22.1 0.0 3.2 3 0 0 3 3 3 2 Methyltransferase small domain Methyltransf_15 PF09445.5 gi|89256596|ref|YP_513958.1| - 1.9e-08 34.0 0.2 0.004 16.7 0.0 3.4 2 1 1 3 3 3 2 RNA cap guanine-N2 methyltransferase THUMP PF02926.12 gi|89256596|ref|YP_513958.1| - 2e-07 30.9 0.7 7.2e-07 29.1 0.2 2.2 2 0 0 2 2 2 1 THUMP domain Methyltransf_11 PF08241.7 gi|89256596|ref|YP_513958.1| - 0.00019 21.8 0.2 0.79 10.2 0.0 3.1 2 0 0 2 2 2 2 Methyltransferase domain PrmA PF06325.8 gi|89256596|ref|YP_513958.1| - 0.002 17.2 2.1 6.5 5.7 0.4 3.6 3 0 0 3 3 3 2 Ribosomal protein L11 methyltransferase (PrmA) MT-A70 PF05063.9 gi|89256596|ref|YP_513958.1| - 0.072 12.6 0.0 0.072 12.6 0.0 2.1 3 0 0 3 3 3 0 MT-A70 FA_hydroxylase PF04116.8 gi|89256597|ref|YP_513959.1| - 3.4e-13 50.0 19.8 3.4e-13 50.0 13.7 1.5 2 0 0 2 2 2 1 Fatty acid hydroxylase superfamily SNARE_assoc PF09335.6 gi|89256597|ref|YP_513959.1| - 0.031 14.4 3.2 0.98 9.6 0.2 2.2 1 1 0 2 2 2 0 SNARE associated Golgi protein AgrB PF04647.10 gi|89256597|ref|YP_513959.1| - 0.48 9.4 13.5 0.37 9.8 3.5 2.3 2 0 0 2 2 2 0 Accessory gene regulator B DUF1113 PF06541.6 gi|89256597|ref|YP_513959.1| - 1 9.1 9.3 0.067 12.9 0.9 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1113) RseC_MucC PF04246.7 gi|89256597|ref|YP_513959.1| - 5.8 6.4 5.6 6.9 6.2 1.2 2.0 2 0 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC RVT_1 PF00078.22 gi|89256598|ref|YP_513960.1| - 1e-10 41.3 0.4 1.2e-10 41.1 0.2 1.1 1 0 0 1 1 1 1 Reverse transcriptase (RNA-dependent DNA polymerase) DUF3557 PF12078.3 gi|89256598|ref|YP_513960.1| - 0.00052 19.7 0.5 0.00069 19.3 0.4 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF3557) RVT_2 PF07727.9 gi|89256598|ref|YP_513960.1| - 0.019 13.9 0.7 0.023 13.6 0.5 1.2 1 0 0 1 1 1 0 Reverse transcriptase (RNA-dependent DNA polymerase) DDE_3 PF13358.1 gi|89256599|ref|YP_513961.1| - 5.3e-31 107.3 0.0 9e-31 106.5 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.11 gi|89256599|ref|YP_513961.1| - 1.6e-07 31.0 0.2 1.1e-06 28.3 0.1 2.1 2 0 0 2 2 2 1 Transposase DDE_1 PF03184.14 gi|89256599|ref|YP_513961.1| - 6e-07 28.8 0.1 9.5e-07 28.1 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_28 PF13518.1 gi|89256599|ref|YP_513961.1| - 0.00058 19.8 0.0 0.0018 18.2 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain rve PF00665.21 gi|89256599|ref|YP_513961.1| - 0.00072 19.6 0.0 0.0013 18.7 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.1 gi|89256599|ref|YP_513961.1| - 0.0087 15.6 0.0 0.029 14.0 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.1 gi|89256599|ref|YP_513961.1| - 0.02 15.0 0.0 0.032 14.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix DDE_Tnp_ISAZ013 PF07592.6 gi|89256599|ref|YP_513961.1| - 0.041 12.6 0.7 0.32 9.7 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain CENP-B_N PF04218.8 gi|89256599|ref|YP_513961.1| - 0.069 12.5 0.0 0.7 9.3 0.0 2.5 3 0 0 3 3 3 0 CENP-B N-terminal DNA-binding domain HI0933_like PF03486.9 gi|89256600|ref|YP_513962.1| - 2.5e-39 134.9 0.1 2.7e-39 134.8 0.0 1.0 1 0 0 1 1 1 1 HI0933-like protein FAD_binding_2 PF00890.19 gi|89256600|ref|YP_513962.1| - 0.082 11.7 0.0 0.082 11.7 0.0 1.1 1 0 0 1 1 1 0 FAD binding domain HI0933_like PF03486.9 gi|89256601|ref|YP_513963.1| - 4.8e-70 236.0 0.0 5.3e-70 235.9 0.0 1.0 1 0 0 1 1 1 1 HI0933-like protein HTH_23 PF13384.1 gi|89256602|ref|YP_513964.1| - 4.4e-05 22.9 0.0 7.5e-05 22.2 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|89256602|ref|YP_513964.1| - 5.6e-05 23.0 0.1 9.1e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_45 PF14947.1 gi|89256602|ref|YP_513964.1| - 0.0001 22.0 0.0 0.00021 21.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_Tnp_1 PF01527.15 gi|89256602|ref|YP_513964.1| - 0.00046 20.0 0.0 0.00093 19.1 0.0 1.7 1 1 0 1 1 1 1 Transposase HTH_24 PF13412.1 gi|89256602|ref|YP_513964.1| - 0.0023 17.2 0.0 0.0052 16.1 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|89256602|ref|YP_513964.1| - 0.0038 16.8 0.0 0.0098 15.5 0.0 1.7 1 0 0 1 1 1 1 HTH domain HTH_7 PF02796.10 gi|89256602|ref|YP_513964.1| - 0.0093 15.8 0.0 0.021 14.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_3 PF01381.17 gi|89256602|ref|YP_513964.1| - 0.011 15.5 0.0 0.024 14.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix HTH_5 PF01022.15 gi|89256602|ref|YP_513964.1| - 0.012 15.2 0.0 0.019 14.6 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_29 PF13551.1 gi|89256602|ref|YP_513964.1| - 0.012 15.7 0.1 0.029 14.5 0.0 1.6 2 0 0 2 2 2 0 Winged helix-turn helix TrmB PF01978.14 gi|89256602|ref|YP_513964.1| - 0.02 14.6 0.0 0.032 13.9 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|89256602|ref|YP_513964.1| - 0.024 14.2 0.0 0.041 13.4 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_psq PF05225.11 gi|89256602|ref|YP_513964.1| - 0.066 12.7 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 helix-turn-helix, Psq domain B-block_TFIIIC PF04182.7 gi|89256602|ref|YP_513964.1| - 0.11 12.4 0.5 0.19 11.6 0.0 1.6 2 0 0 2 2 2 0 B-block binding subunit of TFIIIC DUF2481 PF10654.4 gi|89256602|ref|YP_513964.1| - 0.12 12.0 2.3 0.22 11.2 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2481) adh_short PF00106.20 gi|89256603|ref|YP_513965.1| - 8.6e-23 81.0 0.1 1.2e-22 80.5 0.0 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|89256603|ref|YP_513965.1| - 5.7e-12 45.9 0.1 6.8e-12 45.6 0.1 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|89256603|ref|YP_513965.1| - 6.5e-08 32.4 0.0 9.6e-08 31.8 0.0 1.2 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|89256603|ref|YP_513965.1| - 2e-05 24.6 0.0 4e-05 23.6 0.0 1.6 1 1 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|89256603|ref|YP_513965.1| - 0.00026 20.5 0.8 0.00093 18.6 0.6 1.8 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family DUF1776 PF08643.5 gi|89256603|ref|YP_513965.1| - 0.0008 18.6 0.1 0.002 17.2 0.1 1.6 2 0 0 2 2 2 1 Fungal family of unknown function (DUF1776) ADH_zinc_N PF00107.21 gi|89256603|ref|YP_513965.1| - 0.0012 18.3 0.1 0.0023 17.4 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase TrkA_N PF02254.13 gi|89256603|ref|YP_513965.1| - 0.0042 17.0 0.1 0.011 15.6 0.0 1.7 1 0 0 1 1 1 1 TrkA-N domain ApbA PF02558.11 gi|89256603|ref|YP_513965.1| - 0.0084 15.5 0.1 0.012 15.0 0.1 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA PAE PF03283.8 gi|89256603|ref|YP_513965.1| - 0.023 13.3 0.3 0.04 12.5 0.0 1.5 2 0 0 2 2 2 0 Pectinacetylesterase NmrA PF05368.8 gi|89256603|ref|YP_513965.1| - 0.084 12.1 0.1 0.23 10.6 0.0 1.7 2 0 0 2 2 2 0 NmrA-like family 2-Hacid_dh_C PF02826.14 gi|89256603|ref|YP_513965.1| - 0.092 11.8 0.0 0.17 10.9 0.0 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YjeF_N PF03853.10 gi|89256603|ref|YP_513965.1| - 0.11 12.0 0.2 0.53 9.8 0.0 2.0 2 0 0 2 2 2 0 YjeF-related protein N-terminus AA_permease_2 PF13520.1 gi|89256604|ref|YP_513966.1| - 1.6e-25 89.5 24.1 2.1e-25 89.1 16.7 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|89256604|ref|YP_513966.1| - 8.3e-13 47.4 20.5 1.2e-12 46.9 14.2 1.2 1 1 0 1 1 1 1 Amino acid permease SieB PF14163.1 gi|89256604|ref|YP_513966.1| - 1.4 8.4 9.6 0.3 10.6 3.8 2.0 2 0 0 2 2 2 0 Superinfection exclusion protein B AA_permease_2 PF13520.1 gi|89256605|ref|YP_513967.1| - 1.2e-22 80.0 18.7 1.3e-22 79.9 13.0 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|89256605|ref|YP_513967.1| - 1.5e-10 40.0 13.9 1.9e-10 39.7 9.6 1.1 1 0 0 1 1 1 1 Amino acid permease TctB PF07331.6 gi|89256605|ref|YP_513967.1| - 0.31 10.6 11.1 0.44 10.2 7.7 1.3 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family DDE_3 PF13358.1 gi|89256607|ref|YP_513969.1| - 5.3e-31 107.3 0.0 9e-31 106.5 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.11 gi|89256607|ref|YP_513969.1| - 1.6e-07 31.0 0.2 1.1e-06 28.3 0.1 2.1 2 0 0 2 2 2 1 Transposase DDE_1 PF03184.14 gi|89256607|ref|YP_513969.1| - 6e-07 28.8 0.1 9.5e-07 28.1 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_28 PF13518.1 gi|89256607|ref|YP_513969.1| - 0.00058 19.8 0.0 0.0018 18.2 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain rve PF00665.21 gi|89256607|ref|YP_513969.1| - 0.00072 19.6 0.0 0.0013 18.7 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.1 gi|89256607|ref|YP_513969.1| - 0.0087 15.6 0.0 0.029 14.0 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.1 gi|89256607|ref|YP_513969.1| - 0.02 15.0 0.0 0.032 14.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix DDE_Tnp_ISAZ013 PF07592.6 gi|89256607|ref|YP_513969.1| - 0.041 12.6 0.7 0.32 9.7 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain CENP-B_N PF04218.8 gi|89256607|ref|YP_513969.1| - 0.069 12.5 0.0 0.7 9.3 0.0 2.5 3 0 0 3 3 3 0 CENP-B N-terminal DNA-binding domain DUF4440 PF14534.1 gi|89256608|ref|YP_513970.1| - 8.5e-07 29.1 0.0 1.4e-06 28.4 0.0 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4440) SnoaL_2 PF12680.2 gi|89256608|ref|YP_513970.1| - 5e-05 23.6 0.0 5.8e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 SnoaL-like domain SnoaL_3 PF13474.1 gi|89256608|ref|YP_513970.1| - 0.00081 19.4 0.1 0.0012 18.8 0.0 1.3 1 0 0 1 1 1 1 SnoaL-like domain DUF1348 PF07080.6 gi|89256608|ref|YP_513970.1| - 0.0022 17.8 0.6 0.097 12.4 0.0 2.2 1 1 1 2 2 2 1 Protein of unknown function (DUF1348) SnoaL PF07366.7 gi|89256608|ref|YP_513970.1| - 0.036 13.6 0.0 0.048 13.2 0.0 1.2 1 0 0 1 1 1 0 SnoaL-like polyketide cyclase F1F0-ATPsyn_F PF10791.4 gi|89256608|ref|YP_513970.1| - 0.059 13.5 0.1 0.1 12.8 0.0 1.4 1 0 0 1 1 1 0 Mitochondrial F1-F0 ATP synthase subunit F of fungi Inhibitor_I42 PF09394.5 gi|89256609|ref|YP_513971.1| - 4.4e-12 46.1 0.0 5.5e-12 45.8 0.0 1.1 1 0 0 1 1 1 1 Chagasin family peptidase inhibitor I42 DDE_Tnp_1_2 PF13586.1 gi|89256610|ref|YP_513972.1| - 4.6e-16 58.7 0.2 1.3e-15 57.2 0.1 1.8 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|89256610|ref|YP_513972.1| - 2.6e-13 50.0 1.0 8.9e-13 48.2 0.7 1.7 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|89256610|ref|YP_513972.1| - 2.2e-09 37.2 0.1 3.1e-09 36.7 0.1 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF4096 PF13340.1 gi|89256610|ref|YP_513972.1| - 0.0006 19.6 0.0 0.0012 18.6 0.0 1.5 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) NAD_binding_1 PF00175.16 gi|89256611|ref|YP_513973.1| - 1.3e-16 61.1 0.0 1.9e-16 60.6 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain FAD_binding_6 PF00970.19 gi|89256611|ref|YP_513973.1| - 2.5e-12 46.7 0.0 5.1e-12 45.7 0.0 1.5 2 0 0 2 2 2 1 Oxidoreductase FAD-binding domain Ribosomal_L31 PF01197.13 gi|161353780|ref|YP_513974.2| - 7.8e-35 118.7 1.1 9.3e-35 118.4 0.8 1.0 1 0 0 1 1 1 1 Ribosomal protein L31 zf-CSL PF05207.8 gi|161353780|ref|YP_513974.2| - 0.0013 18.2 0.9 0.0017 17.8 0.6 1.1 1 0 0 1 1 1 1 CSL zinc finger Glu_cys_ligase PF04262.9 gi|89256613|ref|YP_513975.1| - 5.5e-118 393.7 0.6 7.6e-118 393.2 0.4 1.1 1 0 0 1 1 1 1 Glutamate-cysteine ligase MVIN PF03023.9 gi|89256614|ref|YP_513976.1| - 1.5e-67 227.9 58.6 2.1e-67 227.5 40.6 1.2 1 0 0 1 1 1 1 MviN-like protein Polysacc_synt_C PF14667.1 gi|89256614|ref|YP_513976.1| - 0.01 15.6 28.7 0.01 15.6 19.9 4.7 3 2 1 4 4 4 0 Polysaccharide biosynthesis C-terminal domain Sel1 PF08238.7 gi|89256615|ref|YP_513977.1| - 3.5e-11 43.3 20.5 6.4e-05 23.4 0.0 5.5 8 0 0 8 8 8 3 Sel1 repeat TPR_11 PF13414.1 gi|89256615|ref|YP_513977.1| - 0.00012 21.6 14.0 0.00032 20.2 0.1 4.2 4 2 0 4 4 4 2 TPR repeat TPR_14 PF13428.1 gi|89256615|ref|YP_513977.1| - 0.028 15.0 8.5 0.55 11.0 0.1 4.3 5 1 0 5 5 5 0 Tetratricopeptide repeat TPR_8 PF13181.1 gi|89256615|ref|YP_513977.1| - 0.03 14.0 0.4 0.03 14.0 0.3 6.4 7 1 0 7 7 7 0 Tetratricopeptide repeat TPR_1 PF00515.23 gi|89256615|ref|YP_513977.1| - 0.053 13.1 15.6 0.62 9.7 0.2 5.7 6 0 0 6 6 6 0 Tetratricopeptide repeat TPR_2 PF07719.12 gi|89256615|ref|YP_513977.1| - 0.31 11.0 17.0 0.38 10.8 1.2 5.5 6 0 0 6 6 6 0 Tetratricopeptide repeat UPF0079 PF02367.12 gi|89256616|ref|YP_513978.1| - 1.7e-43 147.1 0.0 1.8e-43 147.0 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 AAA_22 PF13401.1 gi|89256616|ref|YP_513978.1| - 0.00079 19.5 0.1 0.021 14.9 0.1 2.1 1 1 1 2 2 2 1 AAA domain ABC_tran PF00005.22 gi|89256616|ref|YP_513978.1| - 0.00096 19.4 0.0 0.00096 19.4 0.0 1.3 1 1 0 1 1 1 1 ABC transporter AAA_23 PF13476.1 gi|89256616|ref|YP_513978.1| - 0.0024 18.2 0.0 0.0025 18.2 0.0 1.1 1 0 0 1 1 1 1 AAA domain RNA_helicase PF00910.17 gi|89256616|ref|YP_513978.1| - 0.0066 16.6 0.0 0.0099 16.0 0.0 1.3 1 0 0 1 1 1 1 RNA helicase Arch_ATPase PF01637.13 gi|89256616|ref|YP_513978.1| - 0.011 15.4 0.1 0.014 15.1 0.0 1.1 1 0 0 1 1 1 0 Archaeal ATPase AAA PF00004.24 gi|89256616|ref|YP_513978.1| - 0.012 15.7 0.0 0.014 15.5 0.0 1.2 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.1 gi|89256616|ref|YP_513978.1| - 0.015 15.1 0.0 0.018 14.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|89256616|ref|YP_513978.1| - 0.028 14.0 0.0 0.037 13.7 0.0 1.2 1 0 0 1 1 1 0 NACHT domain AAA_16 PF13191.1 gi|89256616|ref|YP_513978.1| - 0.039 13.9 0.0 0.05 13.5 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.1 gi|89256616|ref|YP_513978.1| - 0.053 13.0 0.0 0.089 12.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_24 PF13479.1 gi|89256616|ref|YP_513978.1| - 0.07 12.6 0.3 0.11 12.1 0.2 1.2 1 0 0 1 1 1 0 AAA domain cobW PF02492.14 gi|89256616|ref|YP_513978.1| - 0.077 12.4 0.2 0.11 11.9 0.1 1.2 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain NB-ARC PF00931.17 gi|89256616|ref|YP_513978.1| - 0.078 11.8 0.0 0.078 11.8 0.0 1.1 1 0 0 1 1 1 0 NB-ARC domain DUF815 PF05673.8 gi|89256616|ref|YP_513978.1| - 0.11 11.4 0.0 0.12 11.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_PrkA PF08298.6 gi|89256616|ref|YP_513978.1| - 0.12 11.0 0.1 0.32 9.6 0.0 1.6 1 1 1 2 2 2 0 PrkA AAA domain Zeta_toxin PF06414.7 gi|89256616|ref|YP_513978.1| - 0.13 11.3 0.0 0.23 10.5 0.0 1.4 1 1 0 1 1 1 0 Zeta toxin Mur_ligase_M PF08245.7 gi|89256617|ref|YP_513979.1| - 1.6e-09 38.0 0.0 1.4e-08 35.0 0.0 2.2 2 1 0 2 2 2 1 Mur ligase middle domain Mur_ligase_C PF02875.16 gi|89256617|ref|YP_513979.1| - 0.01 15.8 0.0 0.028 14.4 0.0 1.7 1 0 0 1 1 1 0 Mur ligase family, glutamate ligase domain Carboxyl_trans PF01039.17 gi|89256618|ref|YP_513980.1| - 1.6e-18 66.3 0.0 2.1e-18 65.9 0.0 1.2 1 0 0 1 1 1 1 Carboxyl transferase domain zinc_ribbon_5 PF13719.1 gi|89256618|ref|YP_513980.1| - 0.003 17.1 2.0 0.93 9.1 0.2 2.4 2 0 0 2 2 2 2 zinc-ribbon domain Auto_anti-p27 PF06677.7 gi|89256618|ref|YP_513980.1| - 0.0036 17.0 0.9 0.0076 15.9 0.7 1.5 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zinc_ribbon_4 PF13717.1 gi|89256618|ref|YP_513980.1| - 0.0066 16.1 2.1 0.75 9.5 0.2 2.4 2 0 0 2 2 2 1 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|89256618|ref|YP_513980.1| - 0.011 15.4 1.3 0.024 14.3 0.9 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DZR PF12773.2 gi|89256618|ref|YP_513980.1| - 0.012 15.3 0.4 0.021 14.6 0.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon Cys_rich_CPCC PF14206.1 gi|89256618|ref|YP_513980.1| - 0.027 14.0 0.5 0.051 13.1 0.3 1.4 1 0 0 1 1 1 0 Cysteine-rich CPCC FYDLN_acid PF09538.5 gi|89256618|ref|YP_513980.1| - 0.038 14.5 0.2 0.067 13.7 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (FYDLN_acid) TF_Zn_Ribbon PF08271.7 gi|89256618|ref|YP_513980.1| - 0.091 12.0 2.8 0.17 11.2 2.0 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding zinc-ribbons_6 PF07191.7 gi|89256618|ref|YP_513980.1| - 0.1 12.4 0.8 0.16 11.7 0.6 1.3 1 0 0 1 1 1 0 zinc-ribbons RNA_POL_M_15KD PF02150.11 gi|89256618|ref|YP_513980.1| - 0.2 11.3 2.7 0.35 10.5 1.8 1.4 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit zf-ribbon_3 PF13248.1 gi|89256618|ref|YP_513980.1| - 0.23 10.6 4.9 1 8.6 3.5 1.9 1 1 1 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|89256618|ref|YP_513980.1| - 0.52 10.1 5.4 1.7 8.5 0.4 2.3 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Molybdop_Fe4S4 PF04879.11 gi|89256618|ref|YP_513980.1| - 1.2 9.0 4.5 2.2 8.1 0.5 2.3 2 0 0 2 2 2 0 Molybdopterin oxidoreductase Fe4S4 domain zinc_ribbon_2 PF13240.1 gi|89256618|ref|YP_513980.1| - 1.7 8.2 5.1 42 3.7 4.2 2.2 1 1 1 2 2 2 0 zinc-ribbon domain NDK PF00334.14 gi|89256619|ref|YP_513981.1| - 4.5e-56 188.3 0.2 5.1e-56 188.2 0.1 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase CTP_synth_N PF06418.9 gi|89256620|ref|YP_513982.1| - 5.9e-130 432.2 0.2 8e-130 431.8 0.1 1.2 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.23 gi|89256620|ref|YP_513982.1| - 3.2e-48 163.7 0.0 5.5e-48 162.9 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|89256620|ref|YP_513982.1| - 5.8e-08 32.4 0.8 4.6e-07 29.4 0.1 2.5 1 1 1 2 2 2 1 Peptidase C26 CbiA PF01656.18 gi|89256620|ref|YP_513982.1| - 2e-07 30.6 0.0 4.1e-07 29.6 0.0 1.5 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DcuC PF03606.10 gi|89256621|ref|YP_513983.1| - 6.3e-54 182.9 11.9 7.8e-54 182.6 8.2 1.0 1 0 0 1 1 1 1 C4-dicarboxylate anaerobic carrier DctM PF06808.7 gi|89256621|ref|YP_513983.1| - 0.053 12.0 13.2 0.082 11.4 9.2 1.3 1 0 0 1 1 1 0 DctM-like transporters DcuC PF03606.10 gi|89256622|ref|YP_513984.1| - 3.8e-54 183.6 10.5 4.4e-54 183.4 7.3 1.0 1 0 0 1 1 1 1 C4-dicarboxylate anaerobic carrier SCFA_trans PF02667.9 gi|89256622|ref|YP_513984.1| - 5.8e-09 35.2 15.0 6.6e-09 35.0 10.4 1.0 1 0 0 1 1 1 1 Short chain fatty acid transporter ABG_transport PF03806.8 gi|89256622|ref|YP_513984.1| - 0.00055 18.0 6.2 0.00055 18.0 4.3 1.8 1 1 0 1 1 1 1 AbgT putative transporter family CAAD PF14159.1 gi|89256622|ref|YP_513984.1| - 8 6.1 7.3 0.45 10.1 0.4 2.4 3 0 0 3 3 3 0 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase ATP-synt_Eps PF04627.8 gi|89256624|ref|YP_513986.1| - 0.11 12.0 0.3 0.21 11.1 0.2 1.4 1 0 0 1 1 1 0 Mitochondrial ATP synthase epsilon chain DDE_3 PF13358.1 gi|89256625|ref|YP_513987.1| - 1.7e-31 108.9 0.0 2.8e-31 108.2 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.11 gi|89256625|ref|YP_513987.1| - 1.5e-07 31.0 0.2 1.1e-06 28.3 0.1 2.1 2 0 0 2 2 2 1 Transposase DDE_1 PF03184.14 gi|89256625|ref|YP_513987.1| - 5.8e-07 28.8 0.1 9.5e-07 28.1 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_28 PF13518.1 gi|89256625|ref|YP_513987.1| - 0.00058 19.8 0.0 0.0018 18.2 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain rve PF00665.21 gi|89256625|ref|YP_513987.1| - 0.00072 19.6 0.0 0.0013 18.7 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.1 gi|89256625|ref|YP_513987.1| - 0.0087 15.6 0.0 0.029 14.0 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.1 gi|89256625|ref|YP_513987.1| - 0.02 15.0 0.0 0.032 14.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix DDE_Tnp_ISAZ013 PF07592.6 gi|89256625|ref|YP_513987.1| - 0.039 12.6 0.6 0.32 9.7 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain Gly_transf_sug PF04488.10 gi|89256626|ref|YP_513988.1| - 1.3e-08 35.1 0.6 1.3e-08 35.1 0.4 3.0 2 2 0 3 3 3 1 Glycosyltransferase sugar-binding region containing DXD motif TcdA_TcdB PF12919.2 gi|89256626|ref|YP_513988.1| - 7.1e-08 31.3 1.5 7.1e-08 31.3 1.1 2.4 1 1 1 2 2 2 2 TcdA/TcdB catalytic glycosyltransferase domain DDE_Tnp_1_2 PF13586.1 gi|89256627|ref|YP_513989.1| - 4.3e-16 58.8 0.2 8e-16 58.0 0.1 1.5 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|89256627|ref|YP_513989.1| - 1.3e-13 50.9 1.4 4.9e-13 49.1 1.0 1.7 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|89256627|ref|YP_513989.1| - 1.4e-09 37.8 0.1 1.7e-09 37.6 0.1 1.1 1 0 0 1 1 1 1 Transposase DDE domain DUF4483 PF14825.1 gi|89256627|ref|YP_513989.1| - 0.16 11.6 0.1 0.2 11.2 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4483) PDDEXK_1 PF12705.2 gi|89256628|ref|YP_513990.1| - 3.7e-15 55.9 0.5 1.3e-14 54.1 0.1 1.7 1 1 1 2 2 2 1 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.12 gi|89256628|ref|YP_513990.1| - 4.4e-13 49.4 0.4 5.6e-13 49.1 0.2 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF83 DUF911 PF06023.7 gi|89256628|ref|YP_513990.1| - 0.0069 15.6 0.0 1.9 7.5 0.0 2.3 1 1 1 2 2 2 2 Archaeal protein of unknown function (DUF911) CRISPR_Cas2 PF09827.4 gi|89256629|ref|YP_513991.1| - 6.3e-15 55.0 0.9 7.3e-15 54.8 0.7 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas2 ACDC PF14733.1 gi|89256630|ref|YP_513992.1| - 0.083 13.0 0.7 0.17 12.0 0.1 1.8 2 0 0 2 2 2 0 AP2-coincident C-terminal ATP-synt_DE PF00401.15 gi|89256630|ref|YP_513992.1| - 0.84 9.5 3.1 0.92 9.4 1.1 1.9 2 0 0 2 2 2 0 ATP synthase, Delta/Epsilon chain, long alpha-helix domain DUF1895 PF08988.5 gi|89256631|ref|YP_513993.1| - 0.042 13.8 0.0 0.13 12.3 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF1895) PROCT PF08084.6 gi|89256631|ref|YP_513993.1| - 0.12 12.0 3.8 0.073 12.7 0.5 2.2 3 0 0 3 3 3 0 PROCT (NUC072) domain Phage_pRha PF09669.5 gi|89256631|ref|YP_513993.1| - 2 8.8 10.3 10 6.5 0.1 4.0 2 2 2 4 4 4 0 Phage regulatory protein Rha (Phage_pRha) OmpA PF00691.15 gi|89256632|ref|YP_513994.1| - 1.3e-15 57.5 0.2 2.4e-15 56.7 0.2 1.4 1 0 0 1 1 1 1 OmpA family OMP_b-brl PF13505.1 gi|89256632|ref|YP_513994.1| - 0.00017 21.5 21.6 0.00017 21.5 15.0 3.7 1 1 0 2 2 2 1 Outer membrane protein beta-barrel domain GTPase_binding PF09027.5 gi|89256632|ref|YP_513994.1| - 0.034 13.7 0.1 0.082 12.5 0.0 1.7 1 0 0 1 1 1 0 GTPase binding Fer4_10 PF13237.1 gi|89256633|ref|YP_513995.1| - 5.1e-13 48.6 12.8 5.5e-13 48.4 8.3 1.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|89256633|ref|YP_513995.1| - 5.5e-08 32.0 20.1 3.9e-06 26.2 2.9 3.2 3 0 0 3 3 3 3 4Fe-4S binding domain Fer4_7 PF12838.2 gi|89256633|ref|YP_513995.1| - 1.5e-07 31.6 13.5 3.1e-07 30.6 9.4 1.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|89256633|ref|YP_513995.1| - 3.8e-07 29.6 12.0 0.00071 19.3 1.1 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|89256633|ref|YP_513995.1| - 2e-05 24.7 16.3 2.9e-05 24.2 11.3 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|89256633|ref|YP_513995.1| - 0.0026 17.5 20.5 0.063 13.1 4.3 2.7 2 1 0 2 2 2 2 4Fe-4S binding domain GF_recep_IV PF14843.1 gi|89256633|ref|YP_513995.1| - 0.0039 16.8 8.9 0.0046 16.5 6.2 1.2 1 0 0 1 1 1 1 Growth factor receptor domain IV Fer4_16 PF13484.1 gi|89256633|ref|YP_513995.1| - 0.0049 17.5 16.2 0.0079 16.9 5.5 2.2 1 1 1 2 2 2 1 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|89256633|ref|YP_513995.1| - 0.019 14.8 19.1 0.14 12.0 13.3 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|89256633|ref|YP_513995.1| - 0.065 13.5 3.4 0.065 13.5 2.4 2.5 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|89256633|ref|YP_513995.1| - 0.1 12.9 18.8 0.13 12.7 1.9 3.0 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_8 PF13183.1 gi|89256633|ref|YP_513995.1| - 0.11 12.5 15.9 4.1 7.5 11.0 2.4 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|89256633|ref|YP_513995.1| - 0.34 11.5 18.3 2.2 9.0 3.7 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain CTP_transf_2 PF01467.21 gi|89256634|ref|YP_513996.1| - 2.2e-17 63.5 0.1 2.8e-17 63.1 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase Citrate_ly_lig PF08218.6 gi|89256634|ref|YP_513996.1| - 1.7e-05 24.3 0.1 0.0013 18.2 0.1 2.0 2 0 0 2 2 2 2 Citrate lyase ligase C-terminal domain SAM_decarbox PF01536.11 gi|89256634|ref|YP_513996.1| - 0.002 16.8 0.3 0.0063 15.2 0.1 1.6 1 1 1 2 2 2 1 Adenosylmethionine decarboxylase Pox_D2 PF04701.8 gi|89256634|ref|YP_513996.1| - 0.057 13.3 0.8 5.2 7.0 0.0 2.1 2 0 0 2 2 2 0 Pox virus D2 protein DUF59 PF01883.14 gi|89256635|ref|YP_513997.1| - 1.3e-13 50.6 0.0 2.5e-13 49.7 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function DUF59 Fe-S_biosyn PF01521.15 gi|89256636|ref|YP_513998.1| - 9.1e-17 61.0 0.1 1e-16 60.8 0.1 1.0 1 0 0 1 1 1 1 Iron-sulphur cluster biosynthesis Reprolysin_2 PF13574.1 gi|89256636|ref|YP_513998.1| - 0.0083 16.1 0.0 0.011 15.7 0.0 1.1 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Glyco_transf_90 PF05686.7 gi|89256636|ref|YP_513998.1| - 0.02 13.5 0.0 0.022 13.4 0.0 1.0 1 0 0 1 1 1 0 Glycosyl transferase family 90 Aminotran_5 PF00266.14 gi|89256637|ref|YP_513999.1| - 1.8e-138 461.3 0.1 2.1e-138 461.1 0.1 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|89256637|ref|YP_513999.1| - 6.8e-08 31.8 0.2 7.6e-08 31.6 0.1 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Met_gamma_lyase PF06838.6 gi|89256637|ref|YP_513999.1| - 2.1e-05 23.0 0.1 3.3e-05 22.3 0.1 1.3 1 0 0 1 1 1 1 Methionine gamma-lyase Imm28 PF15574.1 gi|89256637|ref|YP_513999.1| - 0.001 18.5 0.2 0.0022 17.5 0.1 1.5 1 0 0 1 1 1 1 Immunity protein 28 SelA PF03841.8 gi|89256637|ref|YP_513999.1| - 0.027 13.1 0.1 0.19 10.4 0.0 2.0 2 0 0 2 2 2 0 L-seryl-tRNA selenium transferase B12-binding PF02310.14 gi|89256637|ref|YP_513999.1| - 0.089 12.6 0.0 0.22 11.4 0.0 1.6 1 0 0 1 1 1 0 B12 binding domain NAD_binding_5 PF07994.7 gi|89256637|ref|YP_513999.1| - 0.095 12.1 0.4 0.17 11.3 0.2 1.4 1 1 0 1 1 1 0 Myo-inositol-1-phosphate synthase GRAS PF03514.9 gi|89256637|ref|YP_513999.1| - 0.28 9.8 1.2 0.82 8.3 0.1 1.9 1 1 1 2 2 2 0 GRAS domain family SDH_alpha PF03313.10 gi|89256638|ref|YP_514000.1| - 7.9e-93 310.5 5.5 9.9e-93 310.2 3.8 1.1 1 0 0 1 1 1 1 Serine dehydratase alpha chain SDH_beta PF03315.10 gi|89256638|ref|YP_514000.1| - 9.8e-54 181.6 0.0 1.6e-53 180.9 0.0 1.3 1 0 0 1 1 1 1 Serine dehydratase beta chain DUF45 PF01863.12 gi|89256639|ref|YP_514001.1| - 7.4e-51 172.8 4.6 8.3e-51 172.6 3.2 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF45 WLM PF08325.5 gi|89256639|ref|YP_514001.1| - 6.7e-07 29.3 1.7 2.8e-06 27.3 1.2 1.9 1 1 0 1 1 1 1 WLM domain SprT-like PF10263.4 gi|89256639|ref|YP_514001.1| - 3e-06 26.9 0.5 1e-05 25.2 0.2 1.9 1 1 1 2 2 2 1 SprT-like family Hen1_L PF12623.2 gi|89256639|ref|YP_514001.1| - 0.0007 18.4 0.2 0.12 11.0 0.0 2.1 2 0 0 2 2 2 2 RNA repair, ligase-Pnkp-associating, region of Hen1 Peptidase_U49 PF10463.4 gi|89256639|ref|YP_514001.1| - 0.032 14.0 0.0 0.043 13.5 0.0 1.4 1 0 0 1 1 1 0 Peptidase U49 Nucleoporin2 PF04096.9 gi|89256639|ref|YP_514001.1| - 0.033 13.9 1.0 0.055 13.2 0.1 1.7 2 0 0 2 2 2 0 Nucleoporin autopeptidase THDPS_N_2 PF14805.1 gi|89256639|ref|YP_514001.1| - 0.064 13.1 0.1 0.13 12.1 0.1 1.5 1 0 0 1 1 1 0 Tetrahydrodipicolinate N-succinyltransferase N-terminal PDT PF00800.13 gi|89256640|ref|YP_514002.1| - 1.2e-52 178.0 0.1 1.7e-52 177.6 0.1 1.2 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.20 gi|89256640|ref|YP_514002.1| - 7.1e-07 28.5 0.0 1.4e-06 27.6 0.0 1.6 1 0 0 1 1 1 1 ACT domain Ala_racemase_N PF01168.15 gi|89256641|ref|YP_514003.1| - 1.1e-43 149.3 0.0 1.3e-43 149.0 0.0 1.1 1 0 0 1 1 1 1 Alanine racemase, N-terminal domain Ala_racemase_C PF00842.16 gi|89256641|ref|YP_514003.1| - 1.4e-30 105.3 0.1 3.5e-30 104.0 0.1 1.7 2 0 0 2 2 2 1 Alanine racemase, C-terminal domain MFS_1 PF07690.11 gi|89256642|ref|YP_514004.1| - 1e-15 57.3 55.0 8e-09 34.6 23.7 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily PTR2 PF00854.16 gi|89256642|ref|YP_514004.1| - 5.2e-15 55.0 28.1 1.4e-14 53.6 19.5 1.7 1 1 0 1 1 1 1 POT family DUF4006 PF13179.1 gi|89256642|ref|YP_514004.1| - 0.19 11.2 2.7 0.74 9.4 1.9 2.0 1 0 0 1 1 1 0 Family of unknown function (DUF4006) GST_C_3 PF14497.1 gi|89256643|ref|YP_514005.1| - 4.7e-06 26.9 0.0 7.6e-06 26.3 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_N_3 PF13417.1 gi|89256643|ref|YP_514005.1| - 3.3e-05 24.0 0.0 0.00021 21.4 0.0 2.3 2 1 0 2 2 2 1 Glutathione S-transferase, N-terminal domain GST_C_2 PF13410.1 gi|89256643|ref|YP_514005.1| - 0.0019 18.0 0.0 0.0031 17.3 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_N_2 PF13409.1 gi|89256643|ref|YP_514005.1| - 0.0098 15.8 0.0 0.031 14.2 0.0 1.8 2 0 0 2 2 2 1 Glutathione S-transferase, N-terminal domain GST_C PF00043.20 gi|89256643|ref|YP_514005.1| - 0.022 14.7 0.0 0.046 13.7 0.0 1.6 1 0 0 1 1 1 0 Glutathione S-transferase, C-terminal domain DUF3301 PF11743.3 gi|89256644|ref|YP_514006.1| - 7.9e-22 76.6 0.1 1e-21 76.2 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3301) UPF0228 PF05727.6 gi|89256644|ref|YP_514006.1| - 0.042 13.5 1.9 0.067 12.9 0.6 1.8 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0228) DUF475 PF04332.10 gi|89256645|ref|YP_514007.1| - 4.4e-94 315.3 16.9 4.4e-94 315.3 11.7 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF475) TerC PF03741.11 gi|89256645|ref|YP_514007.1| - 1.8e-17 63.3 18.2 1.8e-16 60.1 12.6 2.3 1 1 0 1 1 1 1 Integral membrane protein TerC family DUF1678 PF07913.6 gi|89256646|ref|YP_514008.1| - 0.0082 15.7 0.0 0.0094 15.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1678) HAD_2 PF13419.1 gi|89256647|ref|YP_514009.1| - 4.6e-06 26.9 0.0 6.7e-06 26.4 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|89256647|ref|YP_514009.1| - 4.7e-06 26.8 0.0 5.7e-06 26.6 0.0 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase UMPH-1 PF05822.7 gi|89256647|ref|YP_514009.1| - 0.0044 16.3 0.0 0.0069 15.7 0.0 1.3 1 1 0 1 1 1 1 Pyrimidine 5'-nucleotidase (UMPH-1) Hydrolase PF00702.21 gi|89256647|ref|YP_514009.1| - 0.0074 16.7 0.0 1 9.7 0.0 2.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.7 gi|89256647|ref|YP_514009.1| - 0.0076 15.4 0.0 0.011 14.9 0.0 1.2 1 0 0 1 1 1 1 Putative Phosphatase PNK3P PF08645.6 gi|89256647|ref|YP_514009.1| - 0.052 12.9 0.0 2.5 7.4 0.0 2.1 2 0 0 2 2 2 0 Polynucleotide kinase 3 phosphatase DUF705 PF05152.7 gi|89256647|ref|YP_514009.1| - 0.068 12.1 0.0 0.1 11.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF705) Antimicrobial_8 PF08103.6 gi|89256648|ref|YP_514010.1| - 0.45 10.5 0.5 0.45 10.5 0.3 2.0 2 0 0 2 2 2 0 Uperin family DDE_Tnp_1_2 PF13586.1 gi|89256649|ref|YP_514011.1| - 8.5e-16 57.9 0.1 2.2e-15 56.5 0.1 1.8 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|89256649|ref|YP_514011.1| - 5.2e-13 49.0 0.9 1.7e-12 47.3 0.6 1.7 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|89256649|ref|YP_514011.1| - 4e-09 36.4 0.1 5.7e-09 35.8 0.1 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF4096 PF13340.1 gi|89256649|ref|YP_514011.1| - 0.00091 19.0 0.0 0.0017 18.1 0.0 1.4 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) DUF2851 PF11013.3 gi|89256649|ref|YP_514011.1| - 0.038 12.7 0.2 0.056 12.1 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2851) DDE_3 PF13358.1 gi|89256650|ref|YP_514012.1| - 3.8e-30 104.5 0.0 6.8e-30 103.7 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.11 gi|89256650|ref|YP_514012.1| - 1.4e-07 31.2 0.2 9.4e-07 28.5 0.1 2.1 2 0 0 2 2 2 1 Transposase DDE_1 PF03184.14 gi|89256650|ref|YP_514012.1| - 8.3e-07 28.3 0.1 1.3e-06 27.7 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_28 PF13518.1 gi|89256650|ref|YP_514012.1| - 0.00051 19.9 0.0 0.0017 18.3 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain rve PF00665.21 gi|89256650|ref|YP_514012.1| - 0.00066 19.7 0.0 0.0012 18.9 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.1 gi|89256650|ref|YP_514012.1| - 0.0075 15.8 0.0 0.027 14.1 0.0 2.0 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.1 gi|89256650|ref|YP_514012.1| - 0.018 15.2 0.0 0.028 14.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix DDE_Tnp_ISAZ013 PF07592.6 gi|89256650|ref|YP_514012.1| - 0.048 12.3 0.6 0.43 9.2 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain CENP-B_N PF04218.8 gi|89256650|ref|YP_514012.1| - 0.058 12.8 0.0 0.64 9.4 0.0 2.5 3 0 0 3 3 3 0 CENP-B N-terminal DNA-binding domain tRNA_synt_2f PF02092.12 gi|89256651|ref|YP_514013.1| - 1.7e-211 703.5 1.2 2.7e-211 702.9 0.8 1.3 1 0 0 1 1 1 1 Glycyl-tRNA synthetase beta subunit DALR_1 PF05746.10 gi|89256651|ref|YP_514013.1| - 1.7e-06 27.9 4.8 2.5e-06 27.4 2.0 2.3 2 0 0 2 2 2 1 DALR anticodon binding domain HHH_6 PF14579.1 gi|89256651|ref|YP_514013.1| - 0.011 15.7 0.3 0.17 11.9 0.0 2.6 2 0 0 2 2 2 0 Helix-hairpin-helix motif Esterase_phd PF10503.4 gi|89256651|ref|YP_514013.1| - 0.13 11.4 0.0 0.24 10.6 0.0 1.3 1 0 0 1 1 1 0 Esterase PHB depolymerase TatD_DNase PF01026.16 gi|89256652|ref|YP_514014.1| - 2.5e-42 144.8 0.5 1.3e-27 96.6 0.0 2.0 1 1 1 2 2 2 2 TatD related DNase Amidohydro_5 PF13594.1 gi|89256652|ref|YP_514014.1| - 0.046 13.5 0.1 2.7 7.8 0.0 2.4 2 0 0 2 2 2 0 Amidohydrolase Nop16 PF09420.5 gi|89256652|ref|YP_514014.1| - 0.077 13.1 0.3 0.64 10.0 0.0 2.1 2 1 0 2 2 2 0 Ribosome biogenesis protein Nop16 SMC_N PF02463.14 gi|89256653|ref|YP_514015.1| - 2e-32 112.2 0.1 3.9e-32 111.2 0.1 1.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|89256653|ref|YP_514015.1| - 3.5e-11 43.8 21.6 2.2e-10 41.2 15.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|89256653|ref|YP_514015.1| - 4.8e-11 42.3 30.4 3e-09 36.4 14.3 2.2 1 1 1 2 2 2 2 AAA ATPase domain AAA_21 PF13304.1 gi|89256653|ref|YP_514015.1| - 9e-11 42.2 21.0 1.3e-08 35.1 14.5 2.7 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|89256653|ref|YP_514015.1| - 0.0001 21.7 0.1 0.0012 18.2 0.0 2.3 2 0 0 2 2 2 1 P-loop containing region of AAA domain NB-ARC PF00931.17 gi|89256653|ref|YP_514015.1| - 0.0012 17.7 0.0 0.86 8.4 0.0 2.3 2 0 0 2 2 2 2 NB-ARC domain Arch_ATPase PF01637.13 gi|89256653|ref|YP_514015.1| - 0.0045 16.7 0.2 0.0045 16.7 0.1 1.9 2 1 0 2 2 2 1 Archaeal ATPase ABC_tran PF00005.22 gi|89256653|ref|YP_514015.1| - 0.02 15.1 5.1 0.048 13.9 3.5 2.0 1 1 0 1 1 1 0 ABC transporter Miro PF08477.8 gi|89256653|ref|YP_514015.1| - 0.026 15.0 0.1 0.085 13.3 0.1 2.0 1 1 0 1 1 1 0 Miro-like protein DUF1311 PF07007.7 gi|89256654|ref|YP_514016.1| - 1.1e-05 25.3 0.2 0.026 14.5 0.0 2.1 1 1 1 2 2 2 2 Protein of unknown function (DUF1311) DUF4263 PF14082.1 gi|89256654|ref|YP_514016.1| - 0.066 13.1 0.1 0.071 13.0 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4263) DUF3519 PF12033.3 gi|89256654|ref|YP_514016.1| - 0.075 13.2 0.8 0.1 12.8 0.5 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3519) EamA PF00892.15 gi|89256655|ref|YP_514017.1| - 1.3e-33 115.7 43.8 9.6e-19 67.6 11.6 2.1 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|89256655|ref|YP_514017.1| - 9.4e-13 48.3 33.6 4.2e-08 33.3 8.1 2.6 2 1 0 2 2 2 2 Multidrug resistance efflux transporter NTP_transferase PF00483.18 gi|89256656|ref|YP_514018.1| - 4e-31 108.1 0.0 4.8e-31 107.9 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|89256656|ref|YP_514018.1| - 1.3e-05 25.3 0.0 2.4e-05 24.4 0.0 1.3 1 1 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.14 gi|89256656|ref|YP_514018.1| - 0.0027 17.3 0.0 0.0055 16.3 0.0 1.5 1 0 0 1 1 1 1 Cytidylyltransferase IspD PF01128.14 gi|89256656|ref|YP_514018.1| - 0.015 14.8 0.0 0.028 13.9 0.0 1.3 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase RNA_pol_Rpb1_3 PF04983.13 gi|89256656|ref|YP_514018.1| - 0.091 12.4 0.0 0.13 12.0 0.0 1.3 1 0 0 1 1 1 0 RNA polymerase Rpb1, domain 3 Cation_efflux PF01545.16 gi|89256657|ref|YP_514019.1| - 1.2e-58 198.5 8.8 1.2e-58 198.5 6.1 1.4 2 0 0 2 2 2 1 Cation efflux family MS_channel PF00924.13 gi|89256657|ref|YP_514019.1| - 0.66 9.2 5.6 2.1 7.6 0.4 2.6 2 1 0 2 2 2 0 Mechanosensitive ion channel HXXEE PF13787.1 gi|89256658|ref|YP_514020.1| - 4.7e-21 75.3 7.4 4.7e-21 75.3 5.1 2.7 2 1 1 3 3 3 1 Protein of unknown function with HXXEE motif DUF846 PF05832.7 gi|89256658|ref|YP_514020.1| - 0.015 14.9 3.4 0.015 14.9 2.3 2.5 3 1 0 3 3 3 0 Eukaryotic protein of unknown function (DUF846) DUF308 PF03729.8 gi|89256658|ref|YP_514020.1| - 0.018 15.0 6.0 0.018 15.0 4.2 2.7 2 1 1 3 3 3 0 Short repeat of unknown function (DUF308) DUF1212 PF06738.7 gi|89256658|ref|YP_514020.1| - 0.11 11.9 5.7 0.17 11.3 3.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1212) Ribosomal_S21 PF01165.15 gi|89256659|ref|YP_514021.1| - 2.7e-18 65.1 4.9 3.9e-18 64.6 3.4 1.3 1 1 0 1 1 1 1 Ribosomal protein S21 CSD PF00313.17 gi|89256660|ref|YP_514022.1| - 8.3e-25 86.3 1.1 9e-25 86.2 0.7 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain OB_RNB PF08206.6 gi|89256660|ref|YP_514022.1| - 2e-05 23.9 0.3 2.9e-05 23.4 0.2 1.3 1 0 0 1 1 1 1 Ribonuclease B OB domain CusF_Ec PF11604.3 gi|89256660|ref|YP_514022.1| - 0.086 12.7 0.0 0.11 12.3 0.0 1.2 1 0 0 1 1 1 0 Copper binding periplasmic protein CusF Radical_SAM PF04055.16 gi|89256661|ref|YP_514023.1| - 8.7e-11 42.2 0.2 2.2e-10 40.9 0.1 1.7 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|89256661|ref|YP_514023.1| - 2.1e-09 37.6 0.1 5.4e-09 36.2 0.0 1.7 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|89256661|ref|YP_514023.1| - 1.2e-07 31.7 0.0 3.6e-07 30.2 0.0 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain Glyco_transf_17 PF04724.8 gi|89256661|ref|YP_514023.1| - 0.0044 16.0 0.0 0.0063 15.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase family 17 Abhydrolase_3 PF07859.8 gi|89256662|ref|YP_514024.1| - 1.5e-20 73.7 0.0 2.3e-20 73.1 0.0 1.4 1 0 0 1 1 1 1 alpha/beta hydrolase fold COesterase PF00135.23 gi|89256662|ref|YP_514024.1| - 2.4e-14 52.9 0.1 4.9e-14 51.9 0.1 1.4 1 1 0 1 1 1 1 Carboxylesterase family Abhydrolase_5 PF12695.2 gi|89256662|ref|YP_514024.1| - 1.1e-13 51.1 0.0 1.7e-13 50.5 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.16 gi|89256662|ref|YP_514024.1| - 7.2e-13 48.2 0.1 1.2e-08 34.4 0.0 2.4 2 1 0 2 2 2 2 Prolyl oligopeptidase family Peptidase_S15 PF02129.13 gi|89256662|ref|YP_514024.1| - 9.3e-06 25.2 0.1 0.011 15.1 0.0 2.4 2 1 0 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) LIP PF03583.9 gi|89256662|ref|YP_514024.1| - 0.0001 21.6 0.1 0.1 11.7 0.0 2.1 2 0 0 2 2 2 2 Secretory lipase Abhydrolase_6 PF12697.2 gi|89256662|ref|YP_514024.1| - 0.00091 19.1 0.0 0.0025 17.7 0.0 1.6 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_2 PF02230.11 gi|89256662|ref|YP_514024.1| - 0.0041 16.5 0.0 0.079 12.3 0.0 2.2 2 0 0 2 2 2 1 Phospholipase/Carboxylesterase DUF2974 PF11187.3 gi|89256662|ref|YP_514024.1| - 0.026 13.8 0.0 0.035 13.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2974) BAAT_C PF08840.6 gi|89256662|ref|YP_514024.1| - 0.027 14.1 0.0 3 7.4 0.0 2.4 2 1 0 2 2 2 0 BAAT / Acyl-CoA thioester hydrolase C terminal SoxE PF06525.6 gi|89256662|ref|YP_514024.1| - 0.039 13.2 0.2 0.079 12.2 0.2 1.4 1 0 0 1 1 1 0 Sulfocyanin (SoxE) Esterase PF00756.15 gi|89256662|ref|YP_514024.1| - 0.044 13.2 0.1 6.2 6.1 0.0 2.9 3 0 0 3 3 3 0 Putative esterase Syntaxin-6_N PF09177.6 gi|89256662|ref|YP_514024.1| - 0.11 12.9 0.0 0.24 11.8 0.0 1.5 1 0 0 1 1 1 0 Syntaxin 6, N-terminal HTH_IclR PF09339.5 gi|89256663|ref|YP_514025.1| - 9.3e-14 50.7 0.0 1.5e-13 50.0 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain IclR PF01614.13 gi|89256663|ref|YP_514025.1| - 4.5e-12 45.7 0.0 7.9e-12 44.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial transcriptional regulator MarR_2 PF12802.2 gi|89256663|ref|YP_514025.1| - 6.1e-08 32.2 0.0 1.2e-07 31.2 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|89256663|ref|YP_514025.1| - 5.4e-07 28.9 0.1 1.7e-06 27.3 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|89256663|ref|YP_514025.1| - 5.8e-07 29.1 0.0 1.3e-06 28.0 0.0 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|89256663|ref|YP_514025.1| - 2.1e-05 24.1 0.0 4.8e-05 22.9 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|89256663|ref|YP_514025.1| - 7.4e-05 22.4 0.0 0.00014 21.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.15 gi|89256663|ref|YP_514025.1| - 0.00017 21.6 0.0 0.0003 20.8 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator HTH_23 PF13384.1 gi|89256663|ref|YP_514025.1| - 0.0002 20.8 0.0 0.00046 19.7 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain RPA_C PF08784.6 gi|89256663|ref|YP_514025.1| - 0.00023 21.5 0.0 0.00038 20.8 0.0 1.3 1 0 0 1 1 1 1 Replication protein A C terminal HTH_Crp_2 PF13545.1 gi|89256663|ref|YP_514025.1| - 0.0034 17.1 0.1 0.026 14.3 0.0 2.3 2 1 0 2 2 2 1 Crp-like helix-turn-helix domain CENP-B_N PF04218.8 gi|89256663|ref|YP_514025.1| - 0.0035 16.7 0.0 0.0096 15.3 0.0 1.8 1 0 0 1 1 1 1 CENP-B N-terminal DNA-binding domain HTH_28 PF13518.1 gi|89256663|ref|YP_514025.1| - 0.0037 17.2 0.0 0.0083 16.1 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|89256663|ref|YP_514025.1| - 0.0054 16.3 0.1 0.022 14.3 0.0 2.2 2 0 0 2 2 2 1 HTH domain DUF4423 PF14394.1 gi|89256663|ref|YP_514025.1| - 0.085 12.4 0.0 0.17 11.4 0.0 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_38 PF13936.1 gi|89256663|ref|YP_514025.1| - 0.12 11.9 0.1 0.26 10.8 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.1 gi|89256663|ref|YP_514025.1| - 0.15 12.2 0.0 0.72 10.0 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn helix Biotin_lipoyl_2 PF13533.1 gi|89256664|ref|YP_514026.1| - 1.2e-10 40.8 0.1 2.6e-10 39.8 0.1 1.6 1 0 0 1 1 1 1 Biotin-lipoyl like HlyD PF00529.15 gi|89256664|ref|YP_514026.1| - 4.9e-09 35.9 0.7 6e-09 35.6 0.5 1.0 1 0 0 1 1 1 1 HlyD family secretion protein HlyD_2 PF12700.2 gi|89256664|ref|YP_514026.1| - 3e-05 23.3 0.8 3.9e-05 22.9 0.5 1.1 1 0 0 1 1 1 1 HlyD family secretion protein HlyD PF00529.15 gi|89256665|ref|YP_514027.1| - 0.00011 21.6 0.0 0.00013 21.3 0.0 1.1 1 0 0 1 1 1 1 HlyD family secretion protein Glyco_hydro_28 PF00295.12 gi|89256665|ref|YP_514027.1| - 0.022 13.7 0.0 0.027 13.4 0.0 1.1 1 0 0 1 1 1 0 Glycosyl hydrolases family 28 FUSC PF04632.7 gi|89256666|ref|YP_514028.1| - 4.8e-47 160.7 0.0 5.2e-47 160.6 0.0 1.0 1 0 0 1 1 1 1 Fusaric acid resistance protein family FUSC_2 PF13515.1 gi|89256666|ref|YP_514028.1| - 4e-13 49.4 11.7 5.8e-13 48.8 8.1 1.2 1 0 0 1 1 1 1 Fusaric acid resistance protein-like DUF2955 PF11168.3 gi|89256666|ref|YP_514028.1| - 2.1e-07 30.6 11.5 3.1e-07 30.1 7.9 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2955) DUF939 PF06081.6 gi|89256666|ref|YP_514028.1| - 4.7e-06 26.5 10.4 4.9e-05 23.2 7.2 2.1 1 1 0 1 1 1 1 Bacterial protein of unknown function (DUF939) ALMT PF11744.3 gi|89256666|ref|YP_514028.1| - 0.0038 15.9 4.5 0.0044 15.7 3.1 1.2 1 0 0 1 1 1 1 Aluminium activated malate transporter FUSC PF04632.7 gi|89256667|ref|YP_514029.1| - 2.2e-19 69.3 0.0 2.3e-19 69.3 0.0 1.0 1 0 0 1 1 1 1 Fusaric acid resistance protein family DUF4181 PF13789.1 gi|89256667|ref|YP_514029.1| - 2.1 8.3 9.9 0.16 11.9 1.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4181) DDE_3 PF13358.1 gi|89256668|ref|YP_514030.1| - 5.3e-31 107.3 0.0 9e-31 106.5 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.11 gi|89256668|ref|YP_514030.1| - 1.6e-07 31.0 0.2 1.1e-06 28.3 0.1 2.1 2 0 0 2 2 2 1 Transposase DDE_1 PF03184.14 gi|89256668|ref|YP_514030.1| - 6e-07 28.8 0.1 9.5e-07 28.1 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_28 PF13518.1 gi|89256668|ref|YP_514030.1| - 0.00058 19.8 0.0 0.0018 18.2 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain rve PF00665.21 gi|89256668|ref|YP_514030.1| - 0.00072 19.6 0.0 0.0013 18.7 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.1 gi|89256668|ref|YP_514030.1| - 0.0087 15.6 0.0 0.029 14.0 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.1 gi|89256668|ref|YP_514030.1| - 0.02 15.0 0.0 0.032 14.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix DDE_Tnp_ISAZ013 PF07592.6 gi|89256668|ref|YP_514030.1| - 0.041 12.6 0.7 0.32 9.7 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain CENP-B_N PF04218.8 gi|89256668|ref|YP_514030.1| - 0.069 12.5 0.0 0.7 9.3 0.0 2.5 3 0 0 3 3 3 0 CENP-B N-terminal DNA-binding domain DUF2797 PF10977.3 gi|89256669|ref|YP_514031.1| - 2e-97 325.4 0.0 2.3e-97 325.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2797) Big_3_4 PF13754.1 gi|89256670|ref|YP_514032.1| - 0.84 10.0 5.6 6.6 7.1 1.1 2.5 2 0 0 2 2 2 0 Bacterial Ig-like domain (group 3) DUF3281 PF11685.3 gi|89256671|ref|YP_514033.1| - 8.7e-07 28.3 0.1 3.6e-06 26.3 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF3281) PKD PF00801.15 gi|89256671|ref|YP_514033.1| - 0.051 13.3 0.6 0.19 11.4 0.2 2.2 2 0 0 2 2 2 0 PKD domain Vps4_C PF09336.5 gi|89256671|ref|YP_514033.1| - 0.064 13.1 0.2 26 4.8 0.0 3.2 3 0 0 3 3 3 0 Vps4 C terminal oligomerisation domain Ldl_recept_b PF00058.12 gi|89256671|ref|YP_514033.1| - 0.15 12.4 0.3 41 4.5 0.0 3.2 3 0 0 3 3 3 0 Low-density lipoprotein receptor repeat class B OstA PF03968.9 gi|89256672|ref|YP_514034.1| - 0.048 13.6 0.1 0.46 10.4 0.0 2.1 1 1 1 2 2 2 0 OstA-like protein OstA_C PF04453.9 gi|89256673|ref|YP_514035.1| - 1.1e-85 288.0 28.4 1.1e-85 288.0 19.7 1.7 1 1 1 2 2 2 2 Organic solvent tolerance protein S4 PF01479.20 gi|89256674|ref|YP_514036.1| - 1.8e-09 36.8 0.4 6.8e-09 35.0 0.0 2.1 2 0 0 2 2 2 1 S4 domain HMG_box_5 PF14887.1 gi|89256674|ref|YP_514036.1| - 0.3 10.9 2.2 0.49 10.2 0.4 1.9 1 1 1 2 2 2 0 HMG (high mobility group) box 5 Carb_kinase PF01256.12 gi|89256675|ref|YP_514037.1| - 9.1e-51 172.4 1.5 1.8e-50 171.5 1.1 1.4 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.10 gi|89256675|ref|YP_514037.1| - 6.5e-42 143.0 0.2 1.8e-41 141.5 0.0 1.8 2 0 0 2 2 2 1 YjeF-related protein N-terminus HK PF02110.10 gi|89256675|ref|YP_514037.1| - 2.1e-07 30.3 0.3 4.8e-07 29.2 0.2 1.6 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Phos_pyr_kin PF08543.7 gi|89256675|ref|YP_514037.1| - 6.1e-07 28.8 0.1 1.2e-06 27.9 0.1 1.4 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase DUF1971 PF09313.6 gi|89256675|ref|YP_514037.1| - 0.062 13.0 0.0 0.13 11.9 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1971) FolB PF02152.13 gi|89256675|ref|YP_514037.1| - 0.091 12.9 0.4 0.47 10.6 0.3 2.2 2 0 0 2 2 2 0 Dihydroneopterin aldolase Abhydrolase_6 PF12697.2 gi|89256676|ref|YP_514038.1| - 1.2e-10 41.6 0.0 1.4e-10 41.4 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|89256676|ref|YP_514038.1| - 2.7e-09 36.9 0.0 3.2e-09 36.6 0.0 1.3 1 1 0 1 1 1 1 Alpha/beta hydrolase family DUF676 PF05057.9 gi|89256676|ref|YP_514038.1| - 5e-09 35.7 0.4 6.6e-08 32.0 0.3 2.2 1 1 0 1 1 1 1 Putative serine esterase (DUF676) PGAP1 PF07819.8 gi|89256676|ref|YP_514038.1| - 3.5e-08 33.3 0.0 6.5e-07 29.1 0.0 2.1 1 1 0 1 1 1 1 PGAP1-like protein DUF900 PF05990.7 gi|89256676|ref|YP_514038.1| - 1.2e-06 28.0 0.2 3.6e-05 23.2 0.0 2.1 1 1 0 2 2 2 1 Alpha/beta hydrolase of unknown function (DUF900) DUF915 PF06028.6 gi|89256676|ref|YP_514038.1| - 5.8e-05 22.2 0.0 0.0018 17.3 0.0 2.6 1 1 1 2 2 2 1 Alpha/beta hydrolase of unknown function (DUF915) Abhydrolase_1 PF00561.15 gi|89256676|ref|YP_514038.1| - 0.003 17.1 0.0 0.0033 17.0 0.0 1.2 1 0 0 1 1 1 1 alpha/beta hydrolase fold LCAT PF02450.10 gi|89256676|ref|YP_514038.1| - 0.0039 16.2 0.0 0.006 15.6 0.0 1.2 1 0 0 1 1 1 1 Lecithin:cholesterol acyltransferase Ser_hydrolase PF06821.8 gi|89256676|ref|YP_514038.1| - 0.01 15.4 0.0 0.012 15.2 0.0 1.2 1 0 0 1 1 1 0 Serine hydrolase PGBA_N PF15436.1 gi|89256676|ref|YP_514038.1| - 0.014 14.6 0.2 0.023 13.9 0.2 1.3 1 0 0 1 1 1 0 Plasminogen-binding protein pgbA N-terminal DUF2305 PF10230.4 gi|89256676|ref|YP_514038.1| - 0.085 12.2 0.1 0.13 11.6 0.0 1.2 1 0 0 1 1 1 0 Uncharacterised conserved protein (DUF2305) GSHPx PF00255.14 gi|89256677|ref|YP_514039.1| - 6.7e-37 125.1 0.2 8.3e-37 124.8 0.2 1.1 1 0 0 1 1 1 1 Glutathione peroxidase INT_SG_DDX_CT_C PF15300.1 gi|89256677|ref|YP_514039.1| - 0.058 12.8 0.0 0.099 12.1 0.0 1.3 1 0 0 1 1 1 0 INTS6/SAGE1/DDX26B/CT45 C-terminus DUF4174 PF13778.1 gi|89256677|ref|YP_514039.1| - 0.078 13.0 0.0 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4174) CM_2 PF01817.16 gi|89256678|ref|YP_514040.1| - 6e-09 35.8 0.2 8e-09 35.4 0.1 1.1 1 0 0 1 1 1 1 Chorismate mutase type II GOLGA2L5 PF15070.1 gi|89256678|ref|YP_514040.1| - 0.047 12.1 0.1 0.048 12.1 0.0 1.0 1 0 0 1 1 1 0 Putative golgin subfamily A member 2-like protein 5 RHD3 PF05879.7 gi|89256679|ref|YP_514041.1| - 4 5.2 4.7 4.5 5.0 3.3 1.0 1 0 0 1 1 1 0 Root hair defective 3 GTP-binding protein (RHD3) CbiQ PF02361.11 gi|89256679|ref|YP_514041.1| - 4.9 6.6 13.4 5.3 6.5 9.3 1.1 1 0 0 1 1 1 0 Cobalt transport protein DDE_Tnp_1_2 PF13586.1 gi|89256680|ref|YP_514042.1| - 5.1e-16 58.6 0.2 1.4e-15 57.2 0.1 1.8 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|89256680|ref|YP_514042.1| - 2.8e-13 49.9 1.0 9.8e-13 48.1 0.7 1.8 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|89256680|ref|YP_514042.1| - 2.4e-09 37.1 0.1 3.3e-09 36.6 0.1 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF4096 PF13340.1 gi|89256680|ref|YP_514042.1| - 0.00063 19.5 0.0 0.0012 18.6 0.0 1.5 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) FAD_binding_2 PF00890.19 gi|89256681|ref|YP_514043.1| - 1.2e-82 278.0 0.1 1.4e-82 277.8 0.1 1.0 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|89256681|ref|YP_514043.1| - 1.6e-13 51.0 5.3 1e-10 41.8 3.7 3.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|89256681|ref|YP_514043.1| - 9.4e-10 37.9 0.3 4.6e-07 29.0 0.3 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase Succ_DH_flav_C PF02910.15 gi|89256681|ref|YP_514043.1| - 4.9e-09 36.1 0.1 9.6e-09 35.1 0.1 1.5 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term HI0933_like PF03486.9 gi|89256681|ref|YP_514043.1| - 1.1e-08 34.0 0.2 2.2e-07 29.7 0.4 2.6 2 1 0 2 2 2 1 HI0933-like protein GIDA PF01134.17 gi|89256681|ref|YP_514043.1| - 4.4e-08 32.3 0.9 4.6e-05 22.4 0.5 2.2 2 0 0 2 2 2 2 Glucose inhibited division protein A Thi4 PF01946.12 gi|89256681|ref|YP_514043.1| - 0.00088 18.4 2.5 0.0021 17.1 0.3 2.5 3 0 0 3 3 3 1 Thi4 family NAD_binding_8 PF13450.1 gi|89256681|ref|YP_514043.1| - 0.0012 18.7 0.1 0.0035 17.3 0.0 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.2 gi|89256681|ref|YP_514043.1| - 0.0021 17.2 0.0 0.0037 16.3 0.0 1.6 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|89256681|ref|YP_514043.1| - 0.0094 15.0 0.1 0.016 14.2 0.1 1.3 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_3 PF13738.1 gi|89256681|ref|YP_514043.1| - 0.011 15.8 0.8 0.056 13.4 0.6 2.2 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase IlvN PF07991.7 gi|89256681|ref|YP_514043.1| - 0.018 14.3 0.4 0.039 13.3 0.3 1.6 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain Pyr_redox PF00070.22 gi|89256681|ref|YP_514043.1| - 0.032 14.6 0.4 0.35 11.3 0.2 2.5 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|89256681|ref|YP_514043.1| - 0.068 12.0 0.3 0.1 11.5 0.2 1.2 1 0 0 1 1 1 0 Lycopene cyclase protein UDPG_MGDP_dh_N PF03721.9 gi|89256681|ref|YP_514043.1| - 0.077 12.3 0.1 0.15 11.4 0.1 1.5 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_9 PF13454.1 gi|89256681|ref|YP_514043.1| - 0.093 12.5 0.1 0.28 10.9 0.1 1.9 1 1 0 1 1 1 0 FAD-NAD(P)-binding QRPTase_C PF01729.14 gi|89256682|ref|YP_514044.1| - 9.6e-58 194.4 2.2 1.4e-57 193.9 1.5 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|89256682|ref|YP_514044.1| - 4.5e-24 84.0 0.1 9.6e-24 83.0 0.1 1.6 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain IMPDH PF00478.20 gi|89256682|ref|YP_514044.1| - 0.039 12.8 0.8 0.041 12.7 0.5 1.2 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain NadA PF02445.11 gi|89256683|ref|YP_514045.1| - 7.8e-104 346.6 0.0 9.2e-104 346.3 0.0 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein Heme_oxygenase PF01126.15 gi|89256683|ref|YP_514045.1| - 0.011 15.3 0.0 0.022 14.3 0.0 1.4 1 0 0 1 1 1 0 Heme oxygenase DDOST_48kD PF03345.9 gi|89256683|ref|YP_514045.1| - 0.038 12.5 0.0 0.085 11.3 0.0 1.4 1 1 0 1 1 1 0 Oligosaccharyltransferase 48 kDa subunit beta DUF3967 PF13152.1 gi|89256683|ref|YP_514045.1| - 0.63 9.7 2.8 11 5.7 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3967) Guanylate_kin PF00625.16 gi|89256684|ref|YP_514046.1| - 5.1e-53 179.2 0.1 5.8e-53 179.0 0.1 1.0 1 0 0 1 1 1 1 Guanylate kinase AAA_33 PF13671.1 gi|89256684|ref|YP_514046.1| - 2.5e-05 24.1 0.0 4.5e-05 23.3 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|89256684|ref|YP_514046.1| - 0.00034 20.9 4.8 0.0013 19.1 3.3 1.8 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|89256684|ref|YP_514046.1| - 0.00081 19.6 0.2 0.002 18.4 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|89256684|ref|YP_514046.1| - 0.0011 19.1 0.2 0.0063 16.6 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|89256684|ref|YP_514046.1| - 0.0018 18.2 0.0 0.0035 17.3 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_10 PF12846.2 gi|89256684|ref|YP_514046.1| - 0.0036 16.7 0.7 0.014 14.8 0.0 1.9 1 1 0 2 2 2 1 AAA-like domain MMR_HSR1 PF01926.18 gi|89256684|ref|YP_514046.1| - 0.02 14.8 0.0 0.031 14.2 0.0 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_17 PF13207.1 gi|89256684|ref|YP_514046.1| - 0.05 14.4 1.2 0.16 12.7 0.7 1.9 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|89256684|ref|YP_514046.1| - 0.05 12.7 0.0 0.099 11.8 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function, DUF258 DUF4344 PF14247.1 gi|89256684|ref|YP_514046.1| - 0.053 13.1 0.0 0.083 12.5 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4344) Viral_helicase1 PF01443.13 gi|89256684|ref|YP_514046.1| - 0.06 12.8 0.0 1.4 8.4 0.0 2.1 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase ABC_tran PF00005.22 gi|89256684|ref|YP_514046.1| - 0.062 13.6 0.1 0.11 12.7 0.1 1.8 1 1 0 1 1 1 0 ABC transporter TRF PF08558.5 gi|89256684|ref|YP_514046.1| - 0.069 12.4 1.1 0.11 11.8 0.8 1.3 1 0 0 1 1 1 0 Telomere repeat binding factor (TRF) Zeta_toxin PF06414.7 gi|89256684|ref|YP_514046.1| - 0.099 11.7 0.1 0.35 9.9 0.0 2.0 1 1 1 2 2 2 0 Zeta toxin AAA_29 PF13555.1 gi|89256684|ref|YP_514046.1| - 0.12 11.9 0.0 0.21 11.1 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain DEAD PF00270.24 gi|89256685|ref|YP_514047.1| - 1.4e-50 171.0 0.2 2.3e-47 160.6 0.0 2.3 2 0 0 2 2 2 2 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|89256685|ref|YP_514047.1| - 4.9e-30 103.2 0.3 6.2e-29 99.6 0.1 2.7 3 0 0 3 3 3 1 Helicase conserved C-terminal domain DbpA PF03880.10 gi|89256685|ref|YP_514047.1| - 1.9e-21 75.5 0.1 5.2e-21 74.0 0.1 1.8 1 0 0 1 1 1 1 DbpA RNA binding domain DUF1253 PF06862.7 gi|89256685|ref|YP_514047.1| - 4.3e-06 25.4 0.4 0.00023 19.7 0.1 2.9 2 1 0 2 2 2 1 Protein of unknown function (DUF1253) ResIII PF04851.10 gi|89256685|ref|YP_514047.1| - 1.4e-05 24.9 0.1 5.3e-05 23.1 0.0 2.0 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit CMS1 PF14617.1 gi|89256685|ref|YP_514047.1| - 0.00076 18.6 0.1 0.00076 18.6 0.0 2.4 3 1 0 3 3 3 1 U3-containing 90S pre-ribosomal complex subunit AAA_19 PF13245.1 gi|89256685|ref|YP_514047.1| - 0.008 15.9 0.3 0.052 13.3 0.1 2.4 2 1 1 3 3 3 1 Part of AAA domain Helicase_C_2 PF13307.1 gi|89256685|ref|YP_514047.1| - 0.05 13.5 0.0 0.12 12.3 0.0 1.6 1 0 0 1 1 1 0 Helicase C-terminal domain Rotamase PF00639.16 gi|89256686|ref|YP_514048.1| - 1.5e-22 80.1 0.0 1.8e-22 79.9 0.0 1.0 1 0 0 1 1 1 1 PPIC-type PPIASE domain Rotamase_3 PF13616.1 gi|89256686|ref|YP_514048.1| - 2.7e-16 59.8 0.0 2.9e-16 59.7 0.0 1.0 1 0 0 1 1 1 1 PPIC-type PPIASE domain Rotamase_2 PF13145.1 gi|89256686|ref|YP_514048.1| - 0.0049 17.5 0.0 0.0057 17.2 0.0 1.1 1 0 0 1 1 1 1 PPIC-type PPIASE domain Sugar_tr PF00083.19 gi|89256687|ref|YP_514049.1| - 3.6e-98 329.0 38.6 4.1e-98 328.8 26.7 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.11 gi|89256687|ref|YP_514049.1| - 1.1e-22 80.2 35.5 1.1e-22 80.2 24.6 1.9 2 0 0 2 2 2 1 Major Facilitator Superfamily MFS_2 PF13347.1 gi|89256687|ref|YP_514049.1| - 2.7e-16 58.9 28.3 3.6e-14 52.0 5.8 2.9 1 1 2 3 3 3 2 MFS/sugar transport protein DUF4094 PF13334.1 gi|89256687|ref|YP_514049.1| - 0.0014 18.9 0.4 7 7.1 0.0 3.4 3 0 0 3 3 3 2 Domain of unknown function (DUF4094) Sugar_tr PF00083.19 gi|89256688|ref|YP_514050.1| - 8.5e-110 367.4 34.9 9.6e-110 367.2 24.2 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.11 gi|89256688|ref|YP_514050.1| - 8.8e-39 133.2 39.1 2.8e-37 128.2 24.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|89256688|ref|YP_514050.1| - 3.6e-10 38.8 27.5 3.5e-08 32.2 6.6 2.9 2 1 1 3 3 3 2 MFS/sugar transport protein TRI12 PF06609.8 gi|89256688|ref|YP_514050.1| - 3.1e-07 28.9 5.4 3.1e-07 28.9 3.8 1.8 2 0 0 2 2 2 1 Fungal trichothecene efflux pump (TRI12) PsbI PF02532.9 gi|89256688|ref|YP_514050.1| - 5.2 6.7 8.1 0.59 9.8 0.5 3.1 2 0 0 2 2 2 0 Photosystem II reaction centre I protein (PSII 4.8 kDa protein) OATP PF03137.15 gi|89256688|ref|YP_514050.1| - 7.2 4.5 27.5 0.022 12.8 2.5 3.7 1 1 2 3 3 3 0 Organic Anion Transporter Polypeptide (OATP) family GalP_UDP_transf PF01087.17 gi|89256689|ref|YP_514051.1| - 5.1e-67 225.4 0.1 8.6e-67 224.7 0.1 1.3 1 0 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, N-terminal domain GalP_UDP_tr_C PF02744.12 gi|89256689|ref|YP_514051.1| - 9e-56 187.9 1.1 3.6e-54 182.7 0.2 2.6 2 1 1 3 3 3 1 Galactose-1-phosphate uridyl transferase, C-terminal domain DUF1564 PF07600.6 gi|89256689|ref|YP_514051.1| - 0.017 14.4 0.6 0.052 12.8 0.4 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1564) HIT PF01230.18 gi|89256689|ref|YP_514051.1| - 0.021 15.3 0.0 0.12 12.8 0.0 2.1 2 0 0 2 2 2 0 HIT domain GalKase_gal_bdg PF10509.4 gi|89256690|ref|YP_514052.1| - 1.6e-23 81.7 0.1 3e-23 80.8 0.0 1.5 1 0 0 1 1 1 1 Galactokinase galactose-binding signature GHMP_kinases_N PF00288.21 gi|89256690|ref|YP_514052.1| - 1.9e-15 56.6 0.0 4.4e-15 55.4 0.0 1.7 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|89256690|ref|YP_514052.1| - 2e-11 43.8 0.0 5.5e-11 42.5 0.0 1.7 1 0 0 1 1 1 1 GHMP kinases C terminal HIT PF01230.18 gi|89256691|ref|YP_514053.1| - 1.6e-08 34.9 0.1 2.1e-08 34.5 0.0 1.2 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.3 gi|89256691|ref|YP_514053.1| - 0.029 14.6 0.0 0.044 14.0 0.0 1.2 1 0 0 1 1 1 0 Scavenger mRNA decapping enzyme C-term binding CTP_transf_3 PF02348.14 gi|89256692|ref|YP_514054.1| - 4.7e-61 206.1 1.1 6e-61 205.8 0.7 1.0 1 0 0 1 1 1 1 Cytidylyltransferase NTP_transf_3 PF12804.2 gi|89256692|ref|YP_514054.1| - 3.2e-11 43.5 0.0 3.8e-11 43.3 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain NTP_transferase PF00483.18 gi|89256692|ref|YP_514054.1| - 0.04 13.2 0.6 0.072 12.3 0.1 1.6 2 0 0 2 2 2 0 Nucleotidyl transferase ADH_zinc_N PF00107.21 gi|89256692|ref|YP_514054.1| - 0.059 12.9 0.3 0.16 11.5 0.1 1.8 2 0 0 2 2 2 0 Zinc-binding dehydrogenase Trm112p PF03966.11 gi|89256693|ref|YP_514055.1| - 9.1e-10 38.7 1.0 1.6e-09 37.9 0.2 1.8 2 0 0 2 2 2 1 Trm112p-like protein TF_Zn_Ribbon PF08271.7 gi|89256693|ref|YP_514055.1| - 0.039 13.2 0.1 0.076 12.3 0.1 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding DUF2318 PF10080.4 gi|89256693|ref|YP_514055.1| - 0.094 12.4 0.1 0.1 12.3 0.0 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) RPA_interact_C PF14768.1 gi|89256693|ref|YP_514055.1| - 0.12 12.7 0.1 0.16 12.3 0.1 1.3 1 0 0 1 1 1 0 Replication protein A interacting C-terminal PAP2 PF01569.16 gi|89256694|ref|YP_514056.1| - 7.9e-18 64.3 3.0 8.7e-18 64.2 2.1 1.0 1 0 0 1 1 1 1 PAP2 superfamily PAP2_3 PF14378.1 gi|89256694|ref|YP_514056.1| - 5.5e-05 22.7 0.5 6e-05 22.6 0.4 1.0 1 0 0 1 1 1 1 PAP2 superfamily PAP2_C PF14360.1 gi|89256694|ref|YP_514056.1| - 0.00049 20.3 3.2 0.00069 19.8 2.2 1.2 1 0 0 1 1 1 1 PAP2 superfamily C-terminal VanZ PF04892.7 gi|89256694|ref|YP_514056.1| - 0.0085 16.0 0.4 0.011 15.6 0.3 1.1 1 0 0 1 1 1 1 VanZ like family FUSC_2 PF13515.1 gi|89256694|ref|YP_514056.1| - 0.01 15.7 2.0 0.012 15.5 1.4 1.2 1 0 0 1 1 1 1 Fusaric acid resistance protein-like DDE_3 PF13358.1 gi|89256695|ref|YP_514057.1| - 5.3e-31 107.3 0.0 9e-31 106.5 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.11 gi|89256695|ref|YP_514057.1| - 1.6e-07 31.0 0.2 1.1e-06 28.3 0.1 2.1 2 0 0 2 2 2 1 Transposase DDE_1 PF03184.14 gi|89256695|ref|YP_514057.1| - 6e-07 28.8 0.1 9.5e-07 28.1 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_28 PF13518.1 gi|89256695|ref|YP_514057.1| - 0.00058 19.8 0.0 0.0018 18.2 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain rve PF00665.21 gi|89256695|ref|YP_514057.1| - 0.00072 19.6 0.0 0.0013 18.7 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.1 gi|89256695|ref|YP_514057.1| - 0.0087 15.6 0.0 0.029 14.0 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.1 gi|89256695|ref|YP_514057.1| - 0.02 15.0 0.0 0.032 14.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix DDE_Tnp_ISAZ013 PF07592.6 gi|89256695|ref|YP_514057.1| - 0.041 12.6 0.7 0.32 9.7 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain CENP-B_N PF04218.8 gi|89256695|ref|YP_514057.1| - 0.069 12.5 0.0 0.7 9.3 0.0 2.5 3 0 0 3 3 3 0 CENP-B N-terminal DNA-binding domain SNARE_assoc PF09335.6 gi|89256696|ref|YP_514058.1| - 3.8e-20 72.3 10.0 8e-20 71.2 7.0 1.6 1 0 0 1 1 1 1 SNARE associated Golgi protein DUF1413 PF07205.6 gi|89256696|ref|YP_514058.1| - 0.13 11.7 0.1 0.77 9.3 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1413) Ribosomal_L20 PF00453.13 gi|89256697|ref|YP_514059.1| - 5.9e-47 158.0 7.5 6.7e-47 157.8 5.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L20 Parvo_coat_N PF08398.5 gi|89256697|ref|YP_514059.1| - 0.088 12.6 0.0 0.2 11.4 0.0 1.6 1 0 0 1 1 1 0 Parvovirus coat protein VP1 Ribosomal_L35p PF01632.14 gi|89256698|ref|YP_514060.1| - 6.4e-20 70.8 9.0 6.9e-20 70.7 6.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L35 IF3_C PF00707.17 gi|89256699|ref|YP_514061.1| - 1.3e-36 124.1 1.3 1.8e-36 123.7 0.9 1.2 1 0 0 1 1 1 1 Translation initiation factor IF-3, C-terminal domain IF3_N PF05198.11 gi|89256699|ref|YP_514061.1| - 1.1e-24 86.1 0.1 2.1e-24 85.2 0.1 1.5 1 0 0 1 1 1 1 Translation initiation factor IF-3, N-terminal domain DUF461 PF04314.8 gi|89256699|ref|YP_514061.1| - 0.027 14.1 0.1 0.06 13.0 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF461) Pox_A32 PF04665.7 gi|89256699|ref|YP_514061.1| - 0.066 12.4 0.1 0.081 12.1 0.0 1.2 1 0 0 1 1 1 0 Poxvirus A32 protein Phi-29_GP4 PF05464.6 gi|89256699|ref|YP_514061.1| - 0.15 11.9 0.9 0.2 11.5 0.7 1.2 1 0 0 1 1 1 0 Phi-29-like late genes activator (early protein GP4) tRNA-synt_2b PF00587.20 gi|89256700|ref|YP_514062.1| - 4.9e-43 146.7 0.1 9.2e-43 145.8 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|89256700|ref|YP_514062.1| - 8.9e-20 70.4 0.4 3e-19 68.7 0.1 2.1 2 0 0 2 2 2 1 Anticodon binding domain tRNA_SAD PF07973.9 gi|89256700|ref|YP_514062.1| - 2.1e-13 49.9 0.0 4.4e-13 48.8 0.0 1.6 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain TGS PF02824.16 gi|89256700|ref|YP_514062.1| - 9.4e-08 31.7 0.0 2.5e-07 30.4 0.0 1.7 1 0 0 1 1 1 1 TGS domain TUDOR PF00567.19 gi|89256700|ref|YP_514062.1| - 0.048 13.4 0.1 0.71 9.7 0.0 2.3 2 0 0 2 2 2 0 Tudor domain Chitin_bind_3 PF03067.10 gi|89256701|ref|YP_514063.1| - 5.1e-36 124.6 0.2 5.1e-36 124.6 0.2 2.6 2 1 0 2 2 2 1 Chitin binding domain CBM_5_12 PF02839.9 gi|89256701|ref|YP_514063.1| - 3.7e-07 29.6 8.8 3.7e-07 29.6 6.1 2.9 3 0 0 3 3 3 1 Carbohydrate binding domain DUF3244 PF11589.3 gi|89256701|ref|YP_514063.1| - 0.00041 20.0 0.2 0.0011 18.6 0.1 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF3244) A2M_N PF01835.14 gi|89256701|ref|YP_514063.1| - 0.038 14.2 0.0 0.34 11.2 0.0 2.6 2 0 0 2 2 2 0 MG2 domain GCV_H PF01597.14 gi|89256702|ref|YP_514064.1| - 3e-38 130.2 0.2 3.5e-38 130.0 0.2 1.0 1 0 0 1 1 1 1 Glycine cleavage H-protein Biotin_lipoyl PF00364.17 gi|89256702|ref|YP_514064.1| - 0.0029 17.2 0.1 0.0056 16.2 0.1 1.4 1 0 0 1 1 1 1 Biotin-requiring enzyme RnfC_N PF13375.1 gi|89256702|ref|YP_514064.1| - 0.14 11.9 0.0 0.2 11.4 0.0 1.3 1 0 0 1 1 1 0 RnfC Barrel sandwich hybrid domain Glyco_tran_28_C PF04101.11 gi|89256703|ref|YP_514065.1| - 1.8e-39 135.0 0.7 4.6e-39 133.7 0.5 1.7 1 0 0 1 1 1 1 Glycosyltransferase family 28 C-terminal domain Glyco_transf_28 PF03033.15 gi|89256703|ref|YP_514065.1| - 1.8e-27 95.8 0.0 4.5e-27 94.5 0.0 1.7 2 0 0 2 2 2 1 Glycosyltransferase family 28 N-terminal domain Glyco_trans_1_3 PF13528.1 gi|89256703|ref|YP_514065.1| - 3.4e-09 36.3 0.0 8.6e-09 35.0 0.0 1.6 1 1 0 1 1 1 1 Glycosyl transferase family 1 Flavoprotein PF02441.14 gi|89256703|ref|YP_514065.1| - 0.004 16.8 1.4 0.83 9.3 0.0 2.8 3 0 0 3 3 3 2 Flavoprotein UDPGT PF00201.13 gi|89256703|ref|YP_514065.1| - 0.0045 15.6 0.0 0.0082 14.7 0.0 1.4 1 0 0 1 1 1 1 UDP-glucoronosyl and UDP-glucosyl transferase Alg14 PF08660.6 gi|89256703|ref|YP_514065.1| - 0.036 14.0 0.1 0.13 12.2 0.0 2.0 2 0 0 2 2 2 0 Oligosaccharide biosynthesis protein Alg14 like MCPsignal PF00015.16 gi|89256703|ref|YP_514065.1| - 0.052 13.0 0.5 0.11 12.0 0.0 1.7 2 0 0 2 2 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain PMBR PF09373.5 gi|89256703|ref|YP_514065.1| - 0.11 12.4 0.0 0.95 9.5 0.0 2.4 2 0 0 2 2 2 0 Pseudomurein-binding repeat SpvD PF05563.7 gi|89256703|ref|YP_514065.1| - 0.18 11.3 2.4 0.51 9.8 0.4 2.4 3 0 0 3 3 3 0 Salmonella plasmid virulence protein SpvD YbaB_DNA_bd PF02575.11 gi|89256704|ref|YP_514066.1| - 1.5e-32 111.3 8.3 1.6e-32 111.2 5.8 1.1 1 0 0 1 1 1 1 YbaB/EbfC DNA-binding family T4SS PF07996.6 gi|89256704|ref|YP_514066.1| - 0.0079 16.0 2.8 0.01 15.6 1.9 1.1 1 0 0 1 1 1 1 Type IV secretion system proteins EAP30 PF04157.11 gi|89256704|ref|YP_514066.1| - 0.021 14.0 4.7 0.65 9.1 1.8 2.1 2 0 0 2 2 2 0 EAP30/Vps36 family OmpH PF03938.9 gi|89256704|ref|YP_514066.1| - 0.043 13.7 4.3 0.072 13.0 3.0 1.3 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) TrwC PF08751.6 gi|89256704|ref|YP_514066.1| - 0.17 11.3 2.8 0.27 10.6 2.0 1.4 1 1 0 1 1 1 0 TrwC relaxase SPT16 PF08644.6 gi|89256704|ref|YP_514066.1| - 0.21 11.4 2.0 0.23 11.2 0.9 1.4 1 1 0 1 1 1 0 FACT complex subunit (SPT16/CDC68) Toprim_4 PF13662.1 gi|89256705|ref|YP_514067.1| - 9.6e-19 67.1 0.0 1.7e-18 66.4 0.0 1.4 1 0 0 1 1 1 1 Toprim domain RecR PF02132.10 gi|89256705|ref|YP_514067.1| - 6e-13 47.9 3.9 1e-12 47.2 2.7 1.4 1 0 0 1 1 1 1 RecR protein Toprim PF01751.17 gi|89256705|ref|YP_514067.1| - 1.6e-06 27.9 0.1 3.7e-06 26.8 0.0 1.6 2 0 0 2 2 2 1 Toprim domain HD_4 PF13328.1 gi|89256706|ref|YP_514068.1| - 8.7e-56 187.8 1.2 1.3e-55 187.3 0.2 1.7 2 0 0 2 2 2 1 HD domain RelA_SpoT PF04607.12 gi|89256706|ref|YP_514068.1| - 2.4e-33 114.5 2.7 2.6e-33 114.4 0.3 2.4 2 0 0 2 2 2 1 Region found in RelA / SpoT proteins TGS PF02824.16 gi|89256706|ref|YP_514068.1| - 9e-22 76.6 0.0 2.1e-21 75.4 0.0 1.7 1 0 0 1 1 1 1 TGS domain HD PF01966.17 gi|89256706|ref|YP_514068.1| - 8e-12 45.2 0.9 3.2e-11 43.2 0.2 2.4 2 0 0 2 2 2 1 HD domain ACT_4 PF13291.1 gi|89256706|ref|YP_514068.1| - 6.2e-09 36.0 0.2 2e-08 34.4 0.1 1.9 1 0 0 1 1 1 1 ACT domain ACT PF01842.20 gi|89256706|ref|YP_514068.1| - 1.4e-05 24.4 1.2 3.6e-05 23.1 0.1 2.3 2 0 0 2 2 2 1 ACT domain ACT_5 PF13710.1 gi|89256706|ref|YP_514068.1| - 0.0024 17.6 0.2 0.0071 16.1 0.2 1.8 1 0 0 1 1 1 1 ACT domain SIS PF01380.17 gi|89256706|ref|YP_514068.1| - 0.0081 15.7 0.0 2.3 7.8 0.0 2.4 2 0 0 2 2 2 2 SIS domain ThiS PF02597.15 gi|89256706|ref|YP_514068.1| - 0.028 14.8 0.1 0.18 12.2 0.0 2.3 2 0 0 2 2 2 0 ThiS family Myb_DNA-bind_4 PF13837.1 gi|89256706|ref|YP_514068.1| - 3 8.0 5.8 0.31 11.1 0.2 2.2 3 0 0 3 3 3 0 Myb/SANT-like DNA-binding domain Caps_synth_CapC PF14102.1 gi|89256708|ref|YP_514070.1| - 5.7e-38 129.7 15.0 8.7e-38 129.1 10.4 1.3 1 0 0 1 1 1 1 Capsule biosynthesis CapC GWT1 PF06423.7 gi|89256708|ref|YP_514070.1| - 0.15 12.1 8.3 0.11 12.5 4.0 1.7 1 1 1 2 2 2 0 GWT1 Abi PF02517.11 gi|89256708|ref|YP_514070.1| - 2.2 8.4 6.8 6.3 7.0 4.7 2.1 1 1 0 1 1 1 0 CAAX protease self-immunity Fijivirus_P9-2 PF06837.6 gi|89256708|ref|YP_514070.1| - 2.8 7.0 7.2 4.5 6.3 5.0 1.3 1 0 0 1 1 1 0 Fijivirus P9-2 protein Mur_ligase_M PF08245.7 gi|89256709|ref|YP_514071.1| - 1.1e-08 35.3 0.0 2.4e-08 34.2 0.0 1.7 2 0 0 2 2 2 1 Mur ligase middle domain MFS_1 PF07690.11 gi|89256710|ref|YP_514072.1| - 1.8e-29 102.5 86.9 8.4e-25 87.2 35.0 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|89256710|ref|YP_514072.1| - 5.5e-25 87.8 42.9 1.2e-20 73.5 14.1 2.0 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_2 PF13347.1 gi|89256710|ref|YP_514072.1| - 1.8e-05 23.3 36.0 0.00023 19.6 10.6 2.7 1 1 1 2 2 2 2 MFS/sugar transport protein OAD_gamma PF04277.8 gi|89256710|ref|YP_514072.1| - 0.02 15.2 1.2 0.02 15.2 0.8 2.2 2 0 0 2 2 2 0 Oxaloacetate decarboxylase, gamma chain DUF2990 PF11693.3 gi|89256710|ref|YP_514072.1| - 0.092 12.6 0.2 0.46 10.3 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2990) Asparaginase_2 PF01112.13 gi|89256711|ref|YP_514073.1| - 6.3e-59 199.2 8.9 1.1e-54 185.3 6.2 2.0 1 1 0 1 1 1 1 Asparaginase Peptidase_S51 PF03575.12 gi|89256712|ref|YP_514074.1| - 1.2e-15 57.5 0.0 1.9e-15 56.9 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S51 PfkB PF00294.19 gi|89256713|ref|YP_514075.1| - 3.8e-40 137.9 0.6 1.4e-39 136.0 0.5 1.7 1 1 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.7 gi|89256713|ref|YP_514075.1| - 0.00029 20.1 0.1 0.00093 18.4 0.0 1.8 1 1 0 1 1 1 1 Phosphomethylpyrimidine kinase HAD_2 PF13419.1 gi|89256714|ref|YP_514076.1| - 1.2e-27 97.3 0.1 1.4e-27 97.0 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Acid_PPase PF12689.2 gi|89256714|ref|YP_514076.1| - 6.4e-06 25.9 1.1 0.0016 18.0 0.0 3.0 1 1 1 3 3 3 2 Acid Phosphatase Hydrolase PF00702.21 gi|89256714|ref|YP_514076.1| - 4.1e-05 24.1 0.0 0.017 15.5 0.0 2.5 1 1 1 3 3 3 2 haloacid dehalogenase-like hydrolase NIF PF03031.13 gi|89256714|ref|YP_514076.1| - 0.00026 20.7 0.2 0.016 14.8 0.1 2.4 2 1 0 2 2 2 1 NLI interacting factor-like phosphatase Hydrolase_like PF13242.1 gi|89256714|ref|YP_514076.1| - 0.00086 18.9 0.1 0.0023 17.5 0.0 1.8 2 0 0 2 2 2 1 HAD-hyrolase-like Glycos_transf_1 PF00534.15 gi|89256715|ref|YP_514077.1| - 1e-27 96.6 0.1 1.8e-27 95.8 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|89256715|ref|YP_514077.1| - 1.1e-14 54.7 0.0 1.7e-14 54.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|89256715|ref|YP_514077.1| - 2.4e-08 34.1 0.0 4.2e-08 33.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|89256715|ref|YP_514077.1| - 1.1e-05 25.2 0.0 1.8e-05 24.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glycos_transf_2 PF00535.21 gi|89256716|ref|YP_514078.1| - 6e-37 126.9 1.6 6e-37 126.9 1.1 1.6 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|89256716|ref|YP_514078.1| - 9.7e-17 61.5 0.0 1.5e-16 60.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|89256716|ref|YP_514078.1| - 4e-11 42.5 8.9 1.1e-10 41.0 6.2 1.7 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|89256716|ref|YP_514078.1| - 0.00024 21.3 0.1 0.00071 19.8 0.1 1.8 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.1 gi|89256716|ref|YP_514078.1| - 0.0042 16.8 0.0 0.0055 16.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.1 gi|89256716|ref|YP_514078.1| - 0.029 13.6 0.0 0.049 12.9 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 21 Rhamno_transf PF11316.3 gi|89256716|ref|YP_514078.1| - 0.062 12.5 0.0 0.098 11.8 0.0 1.3 1 0 0 1 1 1 0 Putative rhamnosyl transferase Glycos_transf_2 PF00535.21 gi|89256717|ref|YP_514079.1| - 2.8e-41 141.0 3.2 2.8e-41 141.0 2.2 1.7 2 1 1 3 3 3 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|89256717|ref|YP_514079.1| - 6.8e-16 58.7 0.0 1e-15 58.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|89256717|ref|YP_514079.1| - 4.5e-10 39.0 8.3 9.9e-10 37.9 5.8 1.7 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|89256717|ref|YP_514079.1| - 0.003 17.8 0.0 0.0092 16.2 0.0 1.9 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.1 gi|89256717|ref|YP_514079.1| - 0.044 13.4 0.0 0.067 12.8 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family group 2 DUF4214 PF13946.1 gi|89256717|ref|YP_514079.1| - 0.059 13.0 0.3 0.18 11.4 0.1 2.0 2 1 0 2 2 2 0 Domain of unknown function (DUF4214) LicD PF04991.8 gi|89256718|ref|YP_514080.1| - 2.3e-15 57.2 17.0 2.7e-15 57.0 9.2 2.6 2 1 0 2 2 2 1 LicD family Methyltransf_18 PF12847.2 gi|89256719|ref|YP_514081.1| - 2.4e-08 34.5 0.0 5.9e-08 33.2 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|89256719|ref|YP_514081.1| - 4.5e-08 32.8 4.0 3.5e-07 29.9 2.8 2.4 1 1 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|89256719|ref|YP_514081.1| - 1.1e-07 31.1 0.1 2.7e-07 29.8 0.0 1.6 1 1 1 2 2 2 1 Ribosomal RNA adenine dimethylase Methyltransf_23 PF13489.1 gi|89256719|ref|YP_514081.1| - 3.4e-06 26.8 0.0 6.1e-06 26.0 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|89256719|ref|YP_514081.1| - 1.2e-05 25.5 0.0 2.2e-05 24.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|89256719|ref|YP_514081.1| - 5.7e-05 23.5 0.0 8.9e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|89256719|ref|YP_514081.1| - 7.6e-05 23.1 0.1 0.00027 21.3 0.1 2.0 1 1 0 1 1 1 1 Methyltransferase domain DREV PF05219.7 gi|89256719|ref|YP_514081.1| - 0.00015 20.7 0.2 0.00019 20.4 0.1 1.3 1 0 0 1 1 1 1 DREV methyltransferase NodS PF05401.6 gi|89256719|ref|YP_514081.1| - 0.0003 20.2 0.0 0.00038 19.9 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) GidB PF02527.10 gi|89256719|ref|YP_514081.1| - 0.00091 18.4 0.4 0.0043 16.1 0.3 2.0 1 1 0 1 1 1 1 rRNA small subunit methyltransferase G CheR PF01739.13 gi|89256719|ref|YP_514081.1| - 0.00093 18.5 0.6 0.0014 17.9 0.4 1.4 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain 120_Rick_ant PF12574.3 gi|89256719|ref|YP_514081.1| - 0.013 14.6 0.4 0.018 14.1 0.3 1.3 1 0 0 1 1 1 0 120 KDa Rickettsia surface antigen Bin3 PF06859.7 gi|89256719|ref|YP_514081.1| - 0.032 14.2 0.3 0.07 13.1 0.2 1.6 1 0 0 1 1 1 0 Bicoid-interacting protein 3 (Bin3) HAD PF12710.2 gi|89256720|ref|YP_514082.1| - 2.7e-10 40.7 0.2 5.3e-10 39.7 0.1 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase NTP_transf_3 PF12804.2 gi|89256720|ref|YP_514082.1| - 6e-09 36.1 0.0 2.5e-08 34.1 0.0 1.9 2 0 0 2 2 2 1 MobA-like NTP transferase domain Hydrolase PF00702.21 gi|89256720|ref|YP_514082.1| - 1.5e-07 32.0 0.4 0.00076 19.9 0.1 2.3 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|89256720|ref|YP_514082.1| - 2.4e-06 27.2 0.7 0.0001 21.9 0.1 2.5 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.7 gi|89256720|ref|YP_514082.1| - 1.3e-05 24.5 0.2 0.012 14.7 0.0 2.2 2 0 0 2 2 2 2 Putative Phosphatase IspD PF01128.14 gi|89256720|ref|YP_514082.1| - 0.0008 18.9 0.0 0.0014 18.2 0.0 1.4 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Hydrolase_6 PF13344.1 gi|89256720|ref|YP_514082.1| - 0.024 14.5 0.1 7.2 6.5 0.0 3.2 3 0 0 3 3 3 0 Haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|89256720|ref|YP_514082.1| - 0.048 13.8 0.0 0.13 12.5 0.0 1.7 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase FAM198 PF15051.1 gi|89256720|ref|YP_514082.1| - 0.079 11.6 0.0 0.4 9.3 0.0 1.9 2 0 0 2 2 2 0 FAM198 protein ABC_tran PF00005.22 gi|89256721|ref|YP_514083.1| - 3.2e-32 111.6 0.0 5.8e-32 110.8 0.0 1.4 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.18 gi|89256721|ref|YP_514083.1| - 1.2e-12 47.8 29.3 1.9e-12 47.2 20.3 1.3 1 0 0 1 1 1 1 ABC transporter transmembrane region AAA_21 PF13304.1 gi|89256721|ref|YP_514083.1| - 8.1e-09 35.8 0.1 8.1e-09 35.8 0.1 3.9 2 2 0 2 2 1 1 AAA domain SMC_N PF02463.14 gi|89256721|ref|YP_514083.1| - 1.9e-08 33.8 0.8 2e-06 27.2 0.6 2.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|89256721|ref|YP_514083.1| - 3.5e-06 26.4 0.2 8.2e-06 25.2 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|89256721|ref|YP_514083.1| - 4.5e-06 25.9 0.0 2e-05 23.8 0.0 1.9 1 1 0 2 2 2 1 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|89256721|ref|YP_514083.1| - 0.0011 18.4 0.2 0.26 10.6 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|89256721|ref|YP_514083.1| - 0.0011 18.4 0.1 0.016 14.6 0.0 2.2 2 0 0 2 2 2 1 AAA-like domain AAA_16 PF13191.1 gi|89256721|ref|YP_514083.1| - 0.0035 17.3 0.0 0.0063 16.5 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|89256721|ref|YP_514083.1| - 0.004 17.3 0.7 0.095 12.8 0.5 2.5 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|89256721|ref|YP_514083.1| - 0.0048 17.7 0.1 0.015 16.0 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|89256721|ref|YP_514083.1| - 0.011 16.0 4.5 0.26 11.5 2.5 3.1 1 1 1 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|89256721|ref|YP_514083.1| - 0.026 14.3 0.0 0.052 13.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|89256721|ref|YP_514083.1| - 0.028 14.3 1.8 0.11 12.3 0.2 2.7 2 1 0 2 2 1 0 AAA domain DEAD PF00270.24 gi|89256721|ref|YP_514083.1| - 0.075 12.5 2.2 0.26 10.7 0.7 2.4 2 1 0 2 2 2 0 DEAD/DEAH box helicase AAA_5 PF07728.9 gi|89256721|ref|YP_514083.1| - 0.085 12.5 0.0 0.79 9.4 0.0 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) RNA_helicase PF00910.17 gi|89256721|ref|YP_514083.1| - 0.085 13.0 0.1 1.2 9.3 0.0 2.6 2 0 0 2 2 2 0 RNA helicase DUF4407 PF14362.1 gi|89256721|ref|YP_514083.1| - 0.1 11.5 1.4 0.23 10.3 0.9 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) MobB PF03205.9 gi|89256721|ref|YP_514083.1| - 0.11 12.1 0.0 0.28 10.9 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA PF00004.24 gi|89256721|ref|YP_514083.1| - 0.29 11.3 2.5 2.2 8.4 0.5 2.7 2 1 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) Glycos_transf_1 PF00534.15 gi|89256722|ref|YP_514084.1| - 5.9e-30 103.9 0.2 1.1e-29 103.0 0.1 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|89256722|ref|YP_514084.1| - 1.1e-11 44.8 0.0 3.2e-11 43.2 0.0 1.7 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.1 gi|89256722|ref|YP_514084.1| - 2.2e-11 44.0 0.0 2.2e-10 40.8 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|89256722|ref|YP_514084.1| - 3.9e-11 42.9 5.1 3.9e-11 42.9 3.5 2.5 2 1 1 3 3 3 1 Glycosyl transferase 4-like Glyco_trans_4_4 PF13579.1 gi|89256722|ref|YP_514084.1| - 5.7e-05 23.3 0.0 9.6e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|89256722|ref|YP_514084.1| - 0.00016 21.8 0.0 0.00034 20.8 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Epimerase PF01370.16 gi|89256723|ref|YP_514085.1| - 2.3e-56 190.8 0.0 2.9e-56 190.5 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|89256723|ref|YP_514085.1| - 2.3e-20 72.4 0.1 2.2e-19 69.2 0.0 1.9 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Epimerase_Csub PF13950.1 gi|89256723|ref|YP_514085.1| - 4.4e-19 68.1 0.1 9.7e-19 67.0 0.1 1.6 1 0 0 1 1 1 1 UDP-glucose 4-epimerase C-term subunit Polysacc_synt_2 PF02719.10 gi|89256723|ref|YP_514085.1| - 1.3e-18 66.9 0.0 6.9e-18 64.5 0.0 1.9 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.12 gi|89256723|ref|YP_514085.1| - 9.7e-15 54.2 0.0 5.1e-14 51.8 0.0 1.8 2 0 0 2 2 2 1 RmlD substrate binding domain NAD_binding_10 PF13460.1 gi|89256723|ref|YP_514085.1| - 5.6e-11 42.7 0.0 1.2e-10 41.6 0.0 1.6 1 1 0 1 1 1 1 NADH(P)-binding NAD_binding_4 PF07993.7 gi|89256723|ref|YP_514085.1| - 3e-10 39.4 0.0 6.2e-07 28.6 0.0 2.2 1 1 1 2 2 2 2 Male sterility protein adh_short PF00106.20 gi|89256723|ref|YP_514085.1| - 5.5e-09 36.1 0.0 1.1e-08 35.1 0.0 1.5 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|89256723|ref|YP_514085.1| - 1.4e-06 28.1 0.0 2.3e-06 27.4 0.0 1.3 1 0 0 1 1 1 1 KR domain NmrA PF05368.8 gi|89256723|ref|YP_514085.1| - 1.3e-05 24.5 0.1 0.0019 17.5 0.0 2.4 2 0 0 2 2 2 1 NmrA-like family UDPG_MGDP_dh_N PF03721.9 gi|89256723|ref|YP_514085.1| - 0.0057 16.0 0.0 0.016 14.5 0.1 1.7 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Saccharop_dh PF03435.13 gi|89256723|ref|YP_514085.1| - 0.015 14.2 0.2 0.023 13.7 0.1 1.3 1 0 0 1 1 1 0 Saccharopine dehydrogenase CodY PF06018.9 gi|89256723|ref|YP_514085.1| - 0.03 13.5 0.0 0.063 12.5 0.0 1.5 1 0 0 1 1 1 0 CodY GAF-like domain Bac_transf PF02397.11 gi|89256724|ref|YP_514086.1| - 6.4e-63 211.2 0.5 6.4e-63 211.2 0.4 1.9 2 0 0 2 2 2 1 Bacterial sugar transferase CoA_binding_3 PF13727.1 gi|89256724|ref|YP_514086.1| - 0.0028 17.5 4.1 0.0028 17.5 2.8 2.2 1 1 1 2 2 2 1 CoA-binding domain Ribul_P_3_epim PF00834.14 gi|89256725|ref|YP_514087.1| - 2.8e-81 271.4 0.1 3.3e-81 271.1 0.1 1.0 1 0 0 1 1 1 1 Ribulose-phosphate 3 epimerase family QRPTase_C PF01729.14 gi|89256725|ref|YP_514087.1| - 6e-06 25.8 0.0 0.00072 19.1 0.0 2.2 2 0 0 2 2 2 2 Quinolinate phosphoribosyl transferase, C-terminal domain CutC PF03932.9 gi|89256725|ref|YP_514087.1| - 0.011 15.0 0.1 2.8 7.1 0.0 2.1 1 1 0 2 2 2 0 CutC family DUF1341 PF07071.6 gi|89256725|ref|YP_514087.1| - 0.014 14.9 0.1 0.21 11.1 0.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1341) His_biosynth PF00977.16 gi|89256725|ref|YP_514087.1| - 0.042 13.1 0.1 0.38 9.9 0.0 2.2 1 1 2 3 3 3 0 Histidine biosynthesis protein SIS PF01380.17 gi|89256726|ref|YP_514088.1| - 3.3e-29 101.1 0.1 7.3e-29 100.0 0.1 1.5 1 0 0 1 1 1 1 SIS domain CBS PF00571.23 gi|89256726|ref|YP_514088.1| - 2.6e-22 78.3 0.1 3.8e-11 42.5 0.1 3.9 4 0 0 4 4 4 2 CBS domain SIS_2 PF13580.1 gi|89256726|ref|YP_514088.1| - 6.6e-09 35.6 1.7 0.00086 19.0 0.1 2.6 1 1 1 2 2 2 2 SIS domain DoxX PF07681.7 gi|89256727|ref|YP_514089.1| - 7.2e-14 51.9 9.5 7.2e-14 51.9 6.6 1.5 2 0 0 2 2 2 1 DoxX SUV3_C PF12513.3 gi|89256727|ref|YP_514089.1| - 0.013 14.8 0.0 0.034 13.6 0.0 1.6 1 0 0 1 1 1 0 Mitochondrial degradasome RNA helicase subunit C terminal Pathogen_betaC1 PF09593.5 gi|89256728|ref|YP_514090.1| - 0.022 14.4 0.6 0.037 13.7 0.3 1.6 1 1 0 1 1 1 0 Beta-satellite pathogenicity beta C1 protein EIF_2_alpha PF07541.7 gi|89256728|ref|YP_514090.1| - 0.071 12.8 0.4 0.26 10.9 0.3 1.8 1 1 0 1 1 1 0 Eukaryotic translation initiation factor 2 alpha subunit DUF3337 PF11816.3 gi|89256728|ref|YP_514090.1| - 0.1 12.0 0.0 0.12 11.7 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3337) DUF2063 PF09836.4 gi|89256729|ref|YP_514091.1| - 7.6e-10 38.6 0.1 1.2e-09 37.9 0.1 1.3 1 1 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2063) LAGLIDADG_1 PF00961.14 gi|89256729|ref|YP_514091.1| - 0.042 14.4 0.9 0.051 14.1 0.6 1.2 1 0 0 1 1 1 0 LAGLIDADG endonuclease Ribosomal_L18ae PF01775.12 gi|89256729|ref|YP_514091.1| - 0.091 12.6 0.1 0.1 12.4 0.1 1.3 1 1 0 1 1 1 0 Ribosomal L18ae/LX protein domain DUF692 PF05114.8 gi|89256730|ref|YP_514092.1| - 3.9e-83 278.5 0.0 4.5e-83 278.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF692) SLR1-BP PF07333.7 gi|89256731|ref|YP_514093.1| - 1.3 9.2 7.2 7.6 6.8 2.2 2.1 2 0 0 2 2 2 0 S locus-related glycoprotein 1 binding pollen coat protein (SLR1-BP) Lactamase_B_2 PF12706.2 gi|89256732|ref|YP_514094.1| - 6.7e-05 22.5 0.0 7.7e-05 22.3 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain DUF982 PF06169.7 gi|89256732|ref|YP_514094.1| - 0.13 11.9 0.0 0.22 11.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF982) Lactamase_B PF00753.22 gi|89256733|ref|YP_514095.1| - 6e-07 29.3 0.1 8.8e-07 28.7 0.0 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|89256733|ref|YP_514095.1| - 8.7e-06 25.4 0.1 1e-05 25.1 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain DDE_Tnp_1_2 PF13586.1 gi|89256734|ref|YP_514096.1| - 5.5e-16 58.5 0.1 1.5e-15 57.1 0.1 1.8 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|89256734|ref|YP_514096.1| - 3.2e-13 49.7 1.0 1.1e-12 48.0 0.7 1.7 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|89256734|ref|YP_514096.1| - 2.6e-09 37.0 0.1 3.6e-09 36.5 0.1 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF4096 PF13340.1 gi|89256734|ref|YP_514096.1| - 0.00067 19.4 0.0 0.0013 18.5 0.0 1.5 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) adh_short_C2 PF13561.1 gi|89256735|ref|YP_514097.1| - 5.7e-77 258.7 0.8 6.4e-77 258.5 0.6 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|89256735|ref|YP_514097.1| - 5e-05 23.2 0.1 6.6e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 short chain dehydrogenase Enoyl_reductase PF12241.3 gi|89256735|ref|YP_514097.1| - 0.00039 19.4 0.2 0.0022 16.9 0.2 2.0 2 0 0 2 2 2 1 Trans-2-enoyl-CoA reductase catalytic region Polysacc_synt_2 PF02719.10 gi|89256735|ref|YP_514097.1| - 0.032 13.1 1.0 0.054 12.3 0.7 1.3 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein Lysine_decarbox PF03641.9 gi|89256736|ref|YP_514098.1| - 4.4e-33 113.9 0.0 1.7e-32 112.0 0.0 1.8 2 0 0 2 2 2 1 Possible lysine decarboxylase DNA_processg_A PF02481.10 gi|89256736|ref|YP_514098.1| - 0.0056 15.5 0.0 0.0091 14.9 0.0 1.3 1 0 0 1 1 1 1 DNA recombination-mediator protein A DUF4386 PF14329.1 gi|89256737|ref|YP_514099.1| - 1.3 8.4 5.9 1.5 8.2 3.9 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4386) PLDc_N PF13396.1 gi|89256737|ref|YP_514099.1| - 2.3 7.9 11.7 4.2 7.1 8.1 1.6 1 1 0 1 1 1 0 Phospholipase_D-nuclease N-terminal DDE_Tnp_1_2 PF13586.1 gi|89256738|ref|YP_514100.1| - 8.5e-16 57.9 0.1 2.2e-15 56.5 0.1 1.8 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|89256738|ref|YP_514100.1| - 5.2e-13 49.0 0.9 1.7e-12 47.3 0.6 1.7 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|89256738|ref|YP_514100.1| - 4e-09 36.4 0.1 5.7e-09 35.8 0.1 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF4096 PF13340.1 gi|89256738|ref|YP_514100.1| - 0.00091 19.0 0.0 0.0017 18.1 0.0 1.4 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) DUF2851 PF11013.3 gi|89256738|ref|YP_514100.1| - 0.038 12.7 0.2 0.056 12.1 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2851) DDE_3 PF13358.1 gi|89256739|ref|YP_514101.1| - 3.8e-30 104.5 0.0 6.8e-30 103.7 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.11 gi|89256739|ref|YP_514101.1| - 1.4e-07 31.2 0.2 9.4e-07 28.5 0.1 2.1 2 0 0 2 2 2 1 Transposase DDE_1 PF03184.14 gi|89256739|ref|YP_514101.1| - 8.3e-07 28.3 0.1 1.3e-06 27.7 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_28 PF13518.1 gi|89256739|ref|YP_514101.1| - 0.00051 19.9 0.0 0.0017 18.3 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain rve PF00665.21 gi|89256739|ref|YP_514101.1| - 0.00066 19.7 0.0 0.0012 18.9 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.1 gi|89256739|ref|YP_514101.1| - 0.0075 15.8 0.0 0.027 14.1 0.0 2.0 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.1 gi|89256739|ref|YP_514101.1| - 0.018 15.2 0.0 0.028 14.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix DDE_Tnp_ISAZ013 PF07592.6 gi|89256739|ref|YP_514101.1| - 0.048 12.3 0.6 0.43 9.2 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain CENP-B_N PF04218.8 gi|89256739|ref|YP_514101.1| - 0.058 12.8 0.0 0.64 9.4 0.0 2.5 3 0 0 3 3 3 0 CENP-B N-terminal DNA-binding domain PAP2 PF01569.16 gi|89256740|ref|YP_514102.1| - 0.0048 16.5 1.2 0.18 11.4 0.0 2.4 2 1 0 2 2 2 2 PAP2 superfamily TatC PF00902.13 gi|89256740|ref|YP_514102.1| - 0.53 9.6 8.9 0.25 10.7 4.6 1.5 1 1 1 2 2 2 0 Sec-independent protein translocase protein (TatC) UvrC_HhH_N PF08459.6 gi|89256741|ref|YP_514103.1| - 9.4e-48 161.6 1.2 6.2e-47 159.0 0.2 2.3 2 0 0 2 2 2 1 UvrC Helix-hairpin-helix N-terminal GIY-YIG PF01541.19 gi|89256741|ref|YP_514103.1| - 3.2e-11 43.4 4.6 1.1e-10 41.7 0.9 2.7 2 0 0 2 2 2 1 GIY-YIG catalytic domain HHH_5 PF14520.1 gi|89256741|ref|YP_514103.1| - 4.1e-09 36.4 0.0 1e-08 35.2 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix domain UVR PF02151.14 gi|89256741|ref|YP_514103.1| - 4.6e-09 35.5 2.2 1.2e-08 34.1 0.6 2.4 2 0 0 2 2 2 1 UvrB/uvrC motif HHH_2 PF12826.2 gi|89256741|ref|YP_514103.1| - 1.9e-07 30.8 0.0 5.9e-07 29.2 0.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH PF00633.18 gi|89256741|ref|YP_514103.1| - 3.2e-06 26.5 0.2 0.0019 17.8 0.0 2.7 2 0 0 2 2 2 2 Helix-hairpin-helix motif HHH_3 PF12836.2 gi|89256741|ref|YP_514103.1| - 0.038 13.9 0.0 0.15 12.0 0.0 2.0 1 0 0 1 1 1 0 Helix-hairpin-helix motif DNA_pol_A_exo1 PF01612.15 gi|89256742|ref|YP_514104.1| - 2.5e-44 150.8 5.7 4.1e-44 150.1 3.9 1.4 1 0 0 1 1 1 1 3'-5' exonuclease HRDC PF00570.18 gi|89256742|ref|YP_514104.1| - 5.5e-09 35.6 0.0 1.5e-08 34.2 0.0 1.7 1 0 0 1 1 1 1 HRDC domain DUF2344 PF10105.4 gi|89256742|ref|YP_514104.1| - 0.41 10.1 3.6 0.26 10.7 1.0 1.9 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2344) MFS_1 PF07690.11 gi|89256743|ref|YP_514105.1| - 2.5e-39 135.0 34.1 4e-39 134.3 23.6 1.3 1 0 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|89256743|ref|YP_514105.1| - 9.9e-12 44.1 12.0 9.9e-12 44.1 8.3 2.6 1 1 1 2 2 2 1 Sugar (and other) transporter MFS_2 PF13347.1 gi|89256743|ref|YP_514105.1| - 1.8e-08 33.2 36.6 6.3e-05 21.5 15.0 2.3 1 1 1 2 2 2 2 MFS/sugar transport protein FNIP_M PF14637.1 gi|89256743|ref|YP_514105.1| - 3.8 7.0 8.1 9.8 5.6 0.8 2.3 2 0 0 2 2 2 0 Folliculin-interacting protein middle domain DUF2237 PF09996.4 gi|89256744|ref|YP_514106.1| - 2e-55 185.2 0.1 2.4e-55 185.0 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2237) Ribosomal_L27 PF01016.14 gi|89256745|ref|YP_514107.1| - 9.1e-40 134.3 1.9 9.9e-40 134.2 1.3 1.0 1 0 0 1 1 1 1 Ribosomal L27 protein OspE PF02471.12 gi|89256745|ref|YP_514107.1| - 0.074 12.9 0.0 0.09 12.6 0.0 1.1 1 0 0 1 1 1 0 Borrelia outer surface protein E Ribosomal_L21p PF00829.16 gi|89256746|ref|YP_514108.1| - 6.2e-35 119.2 6.5 7e-35 119.0 4.5 1.0 1 0 0 1 1 1 1 Ribosomal prokaryotic L21 protein SecA_DEAD PF07517.9 gi|89256747|ref|YP_514109.1| - 5.9e-125 415.9 3.4 1.4e-124 414.6 2.4 1.7 1 0 0 1 1 1 1 SecA DEAD-like domain SecA_SW PF07516.8 gi|89256747|ref|YP_514109.1| - 6.4e-65 218.9 6.1 6.4e-65 218.9 4.3 3.3 4 0 0 4 4 4 1 SecA Wing and Scaffold domain SecA_PP_bind PF01043.15 gi|89256747|ref|YP_514109.1| - 2.4e-37 127.7 0.8 2.4e-37 127.7 0.5 2.5 3 0 0 3 3 3 1 SecA preprotein cross-linking domain SEC-C PF02810.10 gi|89256747|ref|YP_514109.1| - 6e-12 44.8 7.1 9.8e-12 44.1 4.9 1.4 1 0 0 1 1 1 1 SEC-C motif DEAD PF00270.24 gi|89256747|ref|YP_514109.1| - 2.7e-08 33.5 0.4 1.6e-07 30.9 0.0 2.4 3 0 0 3 3 3 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|89256747|ref|YP_514109.1| - 0.033 14.0 1.9 0.67 9.8 1.3 2.8 1 1 0 1 1 1 0 Helicase conserved C-terminal domain DUF4497 PF14924.1 gi|89256747|ref|YP_514109.1| - 0.096 13.0 0.0 0.36 11.1 0.0 2.0 1 0 0 1 1 1 0 Protein of unknown function (DUF4497) LPP20 PF02169.11 gi|89256748|ref|YP_514110.1| - 7.9e-16 57.9 3.7 7.9e-16 57.9 2.6 3.0 3 0 0 3 3 3 1 LPP20 lipoprotein DUF2524 PF10732.4 gi|89256748|ref|YP_514110.1| - 7.7 6.7 10.3 0.19 11.8 1.2 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF2524) NTase_sub_bind PF08780.6 gi|89256749|ref|YP_514111.1| - 0.011 15.4 0.5 0.011 15.4 0.4 1.8 2 1 0 2 2 2 0 Nucleotidyltransferase substrate binding protein like Glyco_hydro_7 PF00840.15 gi|89256749|ref|YP_514111.1| - 0.026 12.9 0.4 0.03 12.7 0.3 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 7 MADF_DNA_bdg PF10545.4 gi|89256749|ref|YP_514111.1| - 0.032 14.4 3.0 2.2 8.5 0.1 2.8 1 1 2 3 3 3 0 Alcohol dehydrogenase transcription factor Myb/SANT-like STN PF07660.9 gi|89256749|ref|YP_514111.1| - 0.056 13.0 0.3 0.14 11.7 0.2 1.7 1 0 0 1 1 1 0 Secretin and TonB N terminus short domain Ppx-GppA PF02541.11 gi|89256749|ref|YP_514111.1| - 0.061 12.5 1.4 0.064 12.4 0.1 1.6 2 0 0 2 2 2 0 Ppx/GppA phosphatase family HTH_30 PF13556.1 gi|89256749|ref|YP_514111.1| - 0.11 12.0 0.1 2.7 7.6 0.1 2.3 1 1 1 2 2 2 0 PucR C-terminal helix-turn-helix domain EB1 PF03271.12 gi|89256749|ref|YP_514111.1| - 0.13 12.3 0.9 0.26 11.3 0.1 1.9 2 0 0 2 2 2 0 EB1-like C-terminal motif Mating_N PF12731.2 gi|89256749|ref|YP_514111.1| - 0.22 11.3 2.6 8.8 6.2 0.1 2.6 3 0 0 3 3 3 0 Mating-type protein beta 1 Myb_DNA-bind_3 PF12776.2 gi|89256749|ref|YP_514111.1| - 7.2 7.3 8.8 9.8 6.8 0.7 2.9 1 1 2 3 3 3 0 Myb/SANT-like DNA-binding domain PNP_UDP_1 PF01048.15 gi|89256750|ref|YP_514112.1| - 2.7e-39 134.5 0.1 3.3e-39 134.2 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily BAH PF01426.13 gi|89256750|ref|YP_514112.1| - 0.1 12.3 0.3 0.15 11.7 0.2 1.3 1 0 0 1 1 1 0 BAH domain DDE_3 PF13358.1 gi|89256751|ref|YP_514113.1| - 5.3e-31 107.3 0.0 9e-31 106.5 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.11 gi|89256751|ref|YP_514113.1| - 1.6e-07 31.0 0.2 1.1e-06 28.3 0.1 2.1 2 0 0 2 2 2 1 Transposase DDE_1 PF03184.14 gi|89256751|ref|YP_514113.1| - 6e-07 28.8 0.1 9.5e-07 28.1 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_28 PF13518.1 gi|89256751|ref|YP_514113.1| - 0.00058 19.8 0.0 0.0018 18.2 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain rve PF00665.21 gi|89256751|ref|YP_514113.1| - 0.00072 19.6 0.0 0.0013 18.7 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.1 gi|89256751|ref|YP_514113.1| - 0.0087 15.6 0.0 0.029 14.0 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.1 gi|89256751|ref|YP_514113.1| - 0.02 15.0 0.0 0.032 14.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix DDE_Tnp_ISAZ013 PF07592.6 gi|89256751|ref|YP_514113.1| - 0.041 12.6 0.7 0.32 9.7 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain CENP-B_N PF04218.8 gi|89256751|ref|YP_514113.1| - 0.069 12.5 0.0 0.7 9.3 0.0 2.5 3 0 0 3 3 3 0 CENP-B N-terminal DNA-binding domain DDE_Tnp_1_2 PF13586.1 gi|89256752|ref|YP_514114.1| - 4.5e-16 58.8 0.1 1.3e-15 57.3 0.1 1.8 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|89256752|ref|YP_514114.1| - 2.5e-13 50.0 1.1 8.7e-13 48.3 0.7 1.7 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|89256752|ref|YP_514114.1| - 2.2e-09 37.2 0.1 3e-09 36.8 0.1 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF4096 PF13340.1 gi|89256752|ref|YP_514114.1| - 0.00059 19.6 0.0 0.0012 18.6 0.0 1.5 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) Peptidase_M41 PF01434.13 gi|89256753|ref|YP_514115.1| - 2.3e-74 249.4 0.1 4.2e-74 248.6 0.1 1.4 1 0 0 1 1 1 1 Peptidase family M41 AAA PF00004.24 gi|89256753|ref|YP_514115.1| - 2.2e-45 154.1 0.0 4.5e-45 153.0 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) FtsH_ext PF06480.10 gi|89256753|ref|YP_514115.1| - 1.1e-14 54.5 0.7 1.1e-14 54.5 0.5 1.8 2 0 0 2 2 2 1 FtsH Extracellular TIP49 PF06068.8 gi|89256753|ref|YP_514115.1| - 1.6e-06 27.1 0.0 2.8e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 TIP49 C-terminus AAA_5 PF07728.9 gi|89256753|ref|YP_514115.1| - 3.3e-05 23.6 0.1 0.00022 20.9 0.0 2.2 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|89256753|ref|YP_514115.1| - 0.00011 23.0 0.0 0.001 19.8 0.0 2.7 3 0 0 3 3 3 1 AAA domain Zeta_toxin PF06414.7 gi|89256753|ref|YP_514115.1| - 0.00043 19.4 0.0 0.00086 18.4 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin RuvB_N PF05496.7 gi|89256753|ref|YP_514115.1| - 0.00074 18.6 0.0 0.0026 16.8 0.0 1.9 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus IstB_IS21 PF01695.12 gi|89256753|ref|YP_514115.1| - 0.00074 18.9 0.0 0.0016 17.9 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_25 PF13481.1 gi|89256753|ref|YP_514115.1| - 0.0015 17.9 4.4 0.15 11.4 0.1 2.7 2 1 1 3 3 3 2 AAA domain AAA_33 PF13671.1 gi|89256753|ref|YP_514115.1| - 0.0021 17.9 0.0 0.0044 16.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|89256753|ref|YP_514115.1| - 0.0021 18.0 0.1 0.016 15.2 0.0 2.1 1 1 1 2 2 2 1 AAA ATPase domain AAA_19 PF13245.1 gi|89256753|ref|YP_514115.1| - 0.0024 17.5 0.4 0.0077 15.9 0.3 1.8 1 0 0 1 1 1 1 Part of AAA domain Mg_chelatase PF01078.16 gi|89256753|ref|YP_514115.1| - 0.003 16.7 1.4 0.011 14.9 0.2 2.1 1 1 1 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_22 PF13401.1 gi|89256753|ref|YP_514115.1| - 0.0043 17.1 0.8 0.081 13.0 0.0 2.7 2 1 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|89256753|ref|YP_514115.1| - 0.0057 16.5 0.0 0.024 14.5 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_2 PF07724.9 gi|89256753|ref|YP_514115.1| - 0.023 14.5 0.1 0.16 11.8 0.0 2.5 2 1 0 2 2 2 0 AAA domain (Cdc48 subfamily) CSTF2_hinge PF14327.1 gi|89256753|ref|YP_514115.1| - 0.027 14.5 0.1 0.051 13.6 0.1 1.5 1 0 0 1 1 1 0 Hinge domain of cleavage stimulation factor subunit 2 Sigma54_activat PF00158.21 gi|89256753|ref|YP_514115.1| - 0.075 12.4 0.0 0.22 10.9 0.0 1.8 1 1 0 1 1 1 0 Sigma-54 interaction domain PhoH PF02562.11 gi|89256753|ref|YP_514115.1| - 0.075 12.2 0.8 0.14 11.3 0.1 1.7 2 0 0 2 2 2 0 PhoH-like protein AAA_28 PF13521.1 gi|89256753|ref|YP_514115.1| - 0.083 12.8 0.0 0.19 11.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|89256753|ref|YP_514115.1| - 0.13 11.8 0.1 0.37 10.4 0.0 1.7 2 0 0 2 2 2 0 NACHT domain Sigma54_activ_2 PF14532.1 gi|89256753|ref|YP_514115.1| - 0.17 11.9 0.0 1.2 9.1 0.0 2.1 2 0 0 2 2 2 0 Sigma-54 interaction domain MFS_1 PF07690.11 gi|89256754|ref|YP_514116.1| - 0.0012 17.6 0.5 0.0013 17.4 0.4 1.0 1 0 0 1 1 1 1 Major Facilitator Superfamily WaaY PF06176.6 gi|89256754|ref|YP_514116.1| - 0.016 14.4 0.1 0.016 14.4 0.0 1.1 1 0 0 1 1 1 0 Lipopolysaccharide core biosynthesis protein (WaaY) MFS_1 PF07690.11 gi|89256755|ref|YP_514117.1| - 1.4e-19 70.0 12.0 1.6e-19 69.8 8.3 1.0 1 0 0 1 1 1 1 Major Facilitator Superfamily DUF2633 PF11119.3 gi|89256755|ref|YP_514117.1| - 0.0061 16.2 0.1 0.015 14.9 0.1 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF2633) TRI12 PF06609.8 gi|89256755|ref|YP_514117.1| - 0.27 9.3 8.3 0.16 10.1 4.2 1.8 1 1 1 2 2 2 0 Fungal trichothecene efflux pump (TRI12) DDE_Tnp_1_2 PF13586.1 gi|89256756|ref|YP_514118.1| - 4.5e-16 58.8 0.1 1.3e-15 57.3 0.1 1.8 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|89256756|ref|YP_514118.1| - 2.5e-13 50.0 1.1 8.7e-13 48.3 0.7 1.7 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|89256756|ref|YP_514118.1| - 2.2e-09 37.2 0.1 3e-09 36.8 0.1 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF4096 PF13340.1 gi|89256756|ref|YP_514118.1| - 0.00059 19.6 0.0 0.0012 18.6 0.0 1.5 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) Peptidase_M41 PF01434.13 gi|89256757|ref|YP_514119.1| - 2.3e-74 249.4 0.1 4.2e-74 248.6 0.1 1.4 1 0 0 1 1 1 1 Peptidase family M41 AAA PF00004.24 gi|89256757|ref|YP_514119.1| - 2.2e-45 154.1 0.0 4.5e-45 153.0 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) FtsH_ext PF06480.10 gi|89256757|ref|YP_514119.1| - 1.1e-14 54.5 0.7 1.1e-14 54.5 0.5 1.8 2 0 0 2 2 2 1 FtsH Extracellular TIP49 PF06068.8 gi|89256757|ref|YP_514119.1| - 1.6e-06 27.1 0.0 2.8e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 TIP49 C-terminus AAA_5 PF07728.9 gi|89256757|ref|YP_514119.1| - 3.3e-05 23.6 0.1 0.00022 20.9 0.0 2.2 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|89256757|ref|YP_514119.1| - 0.00011 23.0 0.0 0.001 19.8 0.0 2.7 3 0 0 3 3 3 1 AAA domain Zeta_toxin PF06414.7 gi|89256757|ref|YP_514119.1| - 0.00043 19.4 0.0 0.00086 18.4 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin RuvB_N PF05496.7 gi|89256757|ref|YP_514119.1| - 0.00074 18.6 0.0 0.0026 16.8 0.0 1.9 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus IstB_IS21 PF01695.12 gi|89256757|ref|YP_514119.1| - 0.00074 18.9 0.0 0.0016 17.9 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_25 PF13481.1 gi|89256757|ref|YP_514119.1| - 0.0015 17.9 4.4 0.15 11.4 0.1 2.7 2 1 1 3 3 3 2 AAA domain AAA_33 PF13671.1 gi|89256757|ref|YP_514119.1| - 0.0021 17.9 0.0 0.0044 16.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|89256757|ref|YP_514119.1| - 0.0021 18.0 0.1 0.016 15.2 0.0 2.1 1 1 1 2 2 2 1 AAA ATPase domain AAA_19 PF13245.1 gi|89256757|ref|YP_514119.1| - 0.0024 17.5 0.4 0.0077 15.9 0.3 1.8 1 0 0 1 1 1 1 Part of AAA domain Mg_chelatase PF01078.16 gi|89256757|ref|YP_514119.1| - 0.003 16.7 1.4 0.011 14.9 0.2 2.1 1 1 1 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_22 PF13401.1 gi|89256757|ref|YP_514119.1| - 0.0043 17.1 0.8 0.081 13.0 0.0 2.7 2 1 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|89256757|ref|YP_514119.1| - 0.0057 16.5 0.0 0.024 14.5 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_2 PF07724.9 gi|89256757|ref|YP_514119.1| - 0.023 14.5 0.1 0.16 11.8 0.0 2.5 2 1 0 2 2 2 0 AAA domain (Cdc48 subfamily) CSTF2_hinge PF14327.1 gi|89256757|ref|YP_514119.1| - 0.027 14.5 0.1 0.051 13.6 0.1 1.5 1 0 0 1 1 1 0 Hinge domain of cleavage stimulation factor subunit 2 Sigma54_activat PF00158.21 gi|89256757|ref|YP_514119.1| - 0.075 12.4 0.0 0.22 10.9 0.0 1.8 1 1 0 1 1 1 0 Sigma-54 interaction domain PhoH PF02562.11 gi|89256757|ref|YP_514119.1| - 0.075 12.2 0.8 0.14 11.3 0.1 1.7 2 0 0 2 2 2 0 PhoH-like protein AAA_28 PF13521.1 gi|89256757|ref|YP_514119.1| - 0.083 12.8 0.0 0.19 11.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|89256757|ref|YP_514119.1| - 0.13 11.8 0.1 0.37 10.4 0.0 1.7 2 0 0 2 2 2 0 NACHT domain Sigma54_activ_2 PF14532.1 gi|89256757|ref|YP_514119.1| - 0.17 11.9 0.0 1.2 9.1 0.0 2.1 2 0 0 2 2 2 0 Sigma-54 interaction domain MFS_1 PF07690.11 gi|89256758|ref|YP_514120.1| - 0.0012 17.6 0.5 0.0013 17.4 0.4 1.0 1 0 0 1 1 1 1 Major Facilitator Superfamily WaaY PF06176.6 gi|89256758|ref|YP_514120.1| - 0.016 14.4 0.1 0.016 14.4 0.0 1.1 1 0 0 1 1 1 0 Lipopolysaccharide core biosynthesis protein (WaaY) MFS_1 PF07690.11 gi|89256759|ref|YP_514121.1| - 1.4e-19 70.0 12.0 1.6e-19 69.8 8.3 1.0 1 0 0 1 1 1 1 Major Facilitator Superfamily DUF2633 PF11119.3 gi|89256759|ref|YP_514121.1| - 0.0061 16.2 0.1 0.015 14.9 0.1 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF2633) TRI12 PF06609.8 gi|89256759|ref|YP_514121.1| - 0.27 9.3 8.3 0.16 10.1 4.2 1.8 1 1 1 2 2 2 0 Fungal trichothecene efflux pump (TRI12) DDE_Tnp_1_2 PF13586.1 gi|89256760|ref|YP_514122.1| - 4.8e-16 58.7 0.2 1.3e-15 57.2 0.1 1.8 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|89256760|ref|YP_514122.1| - 2.6e-13 50.0 1.0 8.9e-13 48.2 0.7 1.7 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|89256760|ref|YP_514122.1| - 2.2e-09 37.2 0.1 3.1e-09 36.7 0.1 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF4096 PF13340.1 gi|89256760|ref|YP_514122.1| - 0.0006 19.6 0.0 0.0012 18.6 0.0 1.5 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) DUF3092 PF11289.3 gi|89256761|ref|YP_514123.1| - 0.01 15.0 1.9 0.014 14.6 1.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3092) ABC_tran PF00005.22 gi|89256762|ref|YP_514124.1| - 6.9e-21 74.9 0.2 1.9e-05 24.9 0.0 4.6 4 0 0 4 4 4 4 ABC transporter SMC_N PF02463.14 gi|89256762|ref|YP_514124.1| - 1.7e-12 47.0 0.0 0.026 13.7 0.0 4.8 4 1 0 5 5 5 4 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|89256762|ref|YP_514124.1| - 1.1e-08 34.4 0.1 0.0038 16.7 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_21 PF13304.1 gi|89256762|ref|YP_514124.1| - 4.5e-07 30.1 15.1 0.0092 15.9 0.0 5.4 4 1 0 4 4 4 2 AAA domain AAA_16 PF13191.1 gi|89256762|ref|YP_514124.1| - 3.4e-06 27.1 0.2 0.0091 15.9 0.0 2.8 3 0 0 3 3 2 2 AAA ATPase domain AAA_25 PF13481.1 gi|89256762|ref|YP_514124.1| - 5e-06 26.0 0.3 0.082 12.2 0.0 3.1 3 0 0 3 3 3 2 AAA domain DUF258 PF03193.11 gi|89256762|ref|YP_514124.1| - 8.2e-06 25.0 0.3 0.13 11.4 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|89256762|ref|YP_514124.1| - 1.5e-05 25.8 6.6 0.14 12.9 0.0 5.2 6 0 0 6 6 4 2 AAA domain AAA_33 PF13671.1 gi|89256762|ref|YP_514124.1| - 3.3e-05 23.8 0.0 0.15 11.9 0.0 3.3 3 0 0 3 3 3 2 AAA domain DnaJ_CXXCXGXG PF00684.14 gi|89256762|ref|YP_514124.1| - 4.8e-05 23.3 4.4 0.0087 16.0 0.3 3.6 4 0 0 4 4 3 1 DnaJ central domain AAA_19 PF13245.1 gi|89256762|ref|YP_514124.1| - 0.00022 20.9 0.1 0.14 11.9 0.0 2.8 2 0 0 2 2 2 1 Part of AAA domain AAA_18 PF13238.1 gi|89256762|ref|YP_514124.1| - 0.00023 21.4 1.2 0.82 9.9 0.0 4.1 5 0 0 5 5 4 1 AAA domain AAA_22 PF13401.1 gi|89256762|ref|YP_514124.1| - 0.00031 20.8 4.2 0.25 11.4 0.0 3.9 4 2 1 5 5 3 2 AAA domain AAA_14 PF13173.1 gi|89256762|ref|YP_514124.1| - 0.00032 20.5 0.1 2.1 8.2 0.0 3.6 3 0 0 3 3 3 2 AAA domain AAA_10 PF12846.2 gi|89256762|ref|YP_514124.1| - 0.00041 19.8 6.7 0.14 11.5 0.0 3.4 3 1 0 3 3 3 2 AAA-like domain AAA_23 PF13476.1 gi|89256762|ref|YP_514124.1| - 0.00046 20.5 10.4 0.011 16.0 0.1 3.6 3 1 0 3 3 3 2 AAA domain KaiC PF06745.8 gi|89256762|ref|YP_514124.1| - 0.00099 18.2 0.0 1.7 7.6 0.0 3.3 3 0 0 3 3 3 2 KaiC cobW PF02492.14 gi|89256762|ref|YP_514124.1| - 0.0038 16.6 0.8 0.24 10.8 0.1 2.5 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain Viral_helicase1 PF01443.13 gi|89256762|ref|YP_514124.1| - 0.0038 16.7 0.0 0.13 11.7 0.0 2.8 3 0 0 3 3 2 1 Viral (Superfamily 1) RNA helicase APS_kinase PF01583.15 gi|89256762|ref|YP_514124.1| - 0.0049 16.5 0.4 2.6 7.6 0.0 3.2 4 0 0 4 4 2 1 Adenylylsulphate kinase DUF2075 PF09848.4 gi|89256762|ref|YP_514124.1| - 0.009 15.0 0.0 4.1 6.2 0.0 2.5 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) MMR_HSR1 PF01926.18 gi|89256762|ref|YP_514124.1| - 0.012 15.6 0.3 1.1 9.2 0.0 3.1 3 0 0 3 3 2 0 50S ribosome-binding GTPase NACHT PF05729.7 gi|89256762|ref|YP_514124.1| - 0.014 15.0 0.0 0.78 9.3 0.0 2.4 2 0 0 2 2 2 0 NACHT domain Glu_synthase PF01645.12 gi|89256762|ref|YP_514124.1| - 0.017 14.0 0.0 0.03 13.2 0.0 1.3 1 0 0 1 1 1 0 Conserved region in glutamate synthase MobB PF03205.9 gi|89256762|ref|YP_514124.1| - 0.03 14.0 0.1 0.89 9.2 0.0 2.6 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.10 gi|89256762|ref|YP_514124.1| - 0.03 14.0 1.2 2.3 7.8 0.0 3.3 3 0 0 3 3 3 0 NTPase Lar_restr_allev PF14354.1 gi|89256762|ref|YP_514124.1| - 0.04 14.2 1.0 8 6.8 0.0 3.4 3 0 0 3 3 3 0 Restriction alleviation protein Lar RNA_helicase PF00910.17 gi|89256762|ref|YP_514124.1| - 0.073 13.2 0.1 23 5.2 0.0 3.5 3 0 0 3 3 3 0 RNA helicase ArgK PF03308.11 gi|89256762|ref|YP_514124.1| - 0.08 11.7 0.0 1.9 7.2 0.0 2.8 3 0 0 3 3 3 0 ArgK protein AAA_15 PF13175.1 gi|89256762|ref|YP_514124.1| - 0.17 10.8 3.8 8.2 5.3 0.0 3.6 4 0 0 4 4 4 0 AAA ATPase domain AAA_30 PF13604.1 gi|89256762|ref|YP_514124.1| - 0.19 11.2 0.1 37 3.8 0.1 3.0 3 0 0 3 3 3 0 AAA domain TGF_beta_GS PF08515.7 gi|89256762|ref|YP_514124.1| - 4.3 6.7 6.2 0.79 9.1 0.2 2.4 2 0 0 2 2 2 0 Transforming growth factor beta type I GS-motif GreA_GreB_N PF03449.10 gi|89256763|ref|YP_514125.1| - 1.7e-30 104.8 2.3 3.1e-30 104.0 1.6 1.4 1 0 0 1 1 1 1 Transcription elongation factor, N-terminal GreA_GreB PF01272.14 gi|89256763|ref|YP_514125.1| - 2.3e-28 97.7 1.7 3.7e-28 97.0 1.2 1.3 1 0 0 1 1 1 1 Transcription elongation factor, GreA/GreB, C-term DUF3888 PF13027.1 gi|89256763|ref|YP_514125.1| - 0.027 14.2 0.9 0.066 13.0 0.3 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF3888) Myosin_N PF02736.14 gi|89256763|ref|YP_514125.1| - 0.23 11.1 1.9 1.1 8.9 0.1 2.4 2 0 0 2 2 2 0 Myosin N-terminal SH3-like domain GspH PF12019.3 gi|89256764|ref|YP_514126.1| - 9.3e-10 38.6 0.1 1.4e-09 38.1 0.0 1.2 1 0 0 1 1 1 1 Type II transport protein GspH N_methyl_2 PF13544.1 gi|89256764|ref|YP_514126.1| - 9.7e-07 28.0 1.7 2e-06 26.9 1.2 1.6 1 0 0 1 1 1 1 Type IV pilin N-term methylation site GFxxxE N_methyl PF07963.7 gi|89256764|ref|YP_514126.1| - 9.9e-05 21.8 3.5 0.0002 20.8 2.4 1.6 1 0 0 1 1 1 1 Prokaryotic N-terminal methylation motif N_methyl_3 PF13633.1 gi|89256764|ref|YP_514126.1| - 0.0011 18.6 8.3 0.002 17.8 5.8 1.5 1 0 0 1 1 1 1 Prokaryotic N-terminal methylation site PGI PF00342.14 gi|89256765|ref|YP_514127.1| - 1.4e-184 614.0 0.6 1.6e-184 613.8 0.4 1.0 1 0 0 1 1 1 1 Phosphoglucose isomerase TPK_catalytic PF04263.11 gi|89256766|ref|YP_514128.1| - 1.8e-13 50.1 0.2 2.7e-13 49.5 0.2 1.2 1 0 0 1 1 1 1 Thiamin pyrophosphokinase, catalytic domain TPK_B1_binding PF04265.9 gi|89256766|ref|YP_514128.1| - 0.00019 21.0 0.0 0.00027 20.5 0.0 1.3 1 0 0 1 1 1 1 Thiamin pyrophosphokinase, vitamin B1 binding domain Het-C PF07217.6 gi|89256766|ref|YP_514128.1| - 0.0063 14.7 0.0 0.0084 14.3 0.0 1.1 1 0 0 1 1 1 1 Heterokaryon incompatibility protein Het-C IMPDH PF00478.20 gi|89256767|ref|YP_514129.1| - 6.1e-151 502.2 8.0 7e-151 502.0 5.6 1.0 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain CBS PF00571.23 gi|89256767|ref|YP_514129.1| - 4.5e-27 93.5 0.1 8.7e-13 47.8 0.0 3.0 3 0 0 3 3 2 2 CBS domain NMO PF03060.10 gi|89256767|ref|YP_514129.1| - 3.3e-14 52.8 12.3 1.3e-08 34.3 6.1 2.2 2 0 0 2 2 2 2 Nitronate monooxygenase FMN_dh PF01070.13 gi|89256767|ref|YP_514129.1| - 3.7e-09 35.9 16.1 3.4e-08 32.7 10.2 2.7 2 1 0 2 2 2 1 FMN-dependent dehydrogenase B12-binding PF02310.14 gi|89256767|ref|YP_514129.1| - 0.00018 21.3 1.0 0.00018 21.3 0.7 2.2 2 0 0 2 2 2 1 B12 binding domain Glu_synthase PF01645.12 gi|89256767|ref|YP_514129.1| - 0.0005 19.1 6.4 0.0005 19.1 4.5 1.6 2 0 0 2 2 2 1 Conserved region in glutamate synthase NanE PF04131.9 gi|89256767|ref|YP_514129.1| - 0.00066 18.6 4.6 0.0035 16.3 3.2 2.5 1 1 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase His_biosynth PF00977.16 gi|89256767|ref|YP_514129.1| - 0.00086 18.6 9.0 0.019 14.2 0.3 2.8 3 1 0 3 3 3 2 Histidine biosynthesis protein PcrB PF01884.12 gi|89256767|ref|YP_514129.1| - 0.0048 16.1 15.5 0.046 12.9 3.8 3.6 2 1 0 2 2 2 2 PcrB family PyrI PF01948.13 gi|89256767|ref|YP_514129.1| - 0.0049 16.8 0.2 0.018 15.0 0.1 2.0 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain DHO_dh PF01180.16 gi|89256767|ref|YP_514129.1| - 0.01 14.8 4.1 0.01 14.8 2.8 2.8 2 1 1 3 3 3 0 Dihydroorotate dehydrogenase TMP-TENI PF02581.12 gi|89256767|ref|YP_514129.1| - 0.015 14.4 6.1 0.28 10.2 2.2 2.4 2 0 0 2 2 2 0 Thiamine monophosphate synthase/TENI PRC PF05239.11 gi|89256767|ref|YP_514129.1| - 0.029 14.2 0.0 4 7.3 0.0 2.8 2 0 0 2 2 2 0 PRC-barrel domain Response_reg PF00072.19 gi|89256767|ref|YP_514129.1| - 0.036 14.0 1.3 0.22 11.5 0.1 2.7 2 1 1 3 3 3 0 Response regulator receiver domain LytR_C PF13399.1 gi|89256767|ref|YP_514129.1| - 0.042 14.2 0.9 0.089 13.1 0.0 2.0 2 0 0 2 2 1 0 LytR cell envelope-related transcriptional attenuator DUF1273 PF06908.6 gi|89256767|ref|YP_514129.1| - 0.08 12.5 0.0 0.15 11.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1273) ThiG PF05690.9 gi|89256767|ref|YP_514129.1| - 0.42 9.6 7.9 0.43 9.6 4.3 1.8 1 1 0 1 1 1 0 Thiazole biosynthesis protein ThiG Peptidase_M17 PF00883.16 gi|89256768|ref|YP_514130.1| - 1.2e-110 369.2 1.2 1.6e-110 368.8 0.8 1.1 1 0 0 1 1 1 1 Cytosol aminopeptidase family, catalytic domain Peptidase_M17_N PF02789.12 gi|89256768|ref|YP_514130.1| - 7e-13 48.4 0.2 1.7e-12 47.1 0.1 1.7 1 0 0 1 1 1 1 Cytosol aminopeptidase family, N-terminal domain YjgP_YjgQ PF03739.9 gi|89256769|ref|YP_514131.1| - 1.1e-59 201.9 12.7 1.2e-59 201.8 8.8 1.0 1 0 0 1 1 1 1 Predicted permease YjgP/YjgQ family DUF4293 PF14126.1 gi|89256769|ref|YP_514131.1| - 0.016 15.1 0.2 0.016 15.1 0.1 2.9 3 1 0 3 3 3 0 Domain of unknown function (DUF4293) YjgP_YjgQ PF03739.9 gi|89256770|ref|YP_514132.1| - 5.5e-48 163.5 21.9 6.5e-48 163.2 15.2 1.0 1 0 0 1 1 1 1 Predicted permease YjgP/YjgQ family FtsX PF02687.16 gi|89256770|ref|YP_514132.1| - 0.0011 18.6 3.4 0.0011 18.6 2.4 3.5 2 2 2 4 4 4 1 FtsX-like permease family ATP_synt_H PF05493.8 gi|89256770|ref|YP_514132.1| - 0.063 13.3 0.6 0.063 13.3 0.4 2.5 3 0 0 3 3 3 0 ATP synthase subunit H Cnl2_NKP2 PF09447.5 gi|89256770|ref|YP_514132.1| - 0.091 12.4 0.2 0.2 11.3 0.1 1.5 1 0 0 1 1 1 0 Cnl2/NKP2 family protein Peptidase_M16 PF00675.15 gi|89256771|ref|YP_514133.1| - 1.8e-28 99.1 0.0 3e-28 98.4 0.0 1.3 1 0 0 1 1 1 1 Insulinase (Peptidase family M16) Peptidase_M16_C PF05193.16 gi|89256771|ref|YP_514133.1| - 4.4e-25 88.4 0.0 8e-25 87.5 0.0 1.5 1 0 0 1 1 1 1 Peptidase M16 inactive domain RE_HaeII PF09554.5 gi|89256771|ref|YP_514133.1| - 0.015 14.2 4.0 0.11 11.5 0.9 2.6 2 1 1 3 3 3 0 HaeII restriction endonuclease Peptidase_M16_C PF05193.16 gi|89256772|ref|YP_514134.1| - 1.2e-19 70.6 0.2 2.3e-19 69.8 0.2 1.5 1 0 0 1 1 1 1 Peptidase M16 inactive domain Peptidase_M16 PF00675.15 gi|89256772|ref|YP_514134.1| - 3.4e-13 49.5 0.2 2.7e-12 46.6 0.0 2.0 2 0 0 2 2 2 1 Insulinase (Peptidase family M16) Cons_hypoth95 PF03602.10 gi|89256773|ref|YP_514135.1| - 2.2e-46 157.5 0.0 2.5e-46 157.3 0.0 1.0 1 0 0 1 1 1 1 Conserved hypothetical protein 95 RsmJ PF04378.8 gi|89256773|ref|YP_514135.1| - 0.0006 18.8 0.0 0.00075 18.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA small subunit methyltransferase D, RsmJ MTS PF05175.9 gi|89256773|ref|YP_514135.1| - 0.00071 18.9 0.0 0.00098 18.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|89256773|ref|YP_514135.1| - 0.053 13.5 0.0 0.071 13.1 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_15 PF09445.5 gi|89256773|ref|YP_514135.1| - 0.092 12.3 0.0 0.15 11.5 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase N6_N4_Mtase PF01555.13 gi|89256773|ref|YP_514135.1| - 0.1 12.1 0.0 0.24 10.8 0.0 1.7 2 0 0 2 2 2 0 DNA methylase UPF0126 PF03458.8 gi|89256774|ref|YP_514136.1| - 4.7e-39 131.8 22.3 1.8e-19 69.1 4.0 2.5 2 0 0 2 2 2 2 UPF0126 domain MiaE PF06175.6 gi|89256775|ref|YP_514137.1| - 7e-70 235.1 10.2 7.1e-56 189.2 2.4 2.0 1 1 1 2 2 2 2 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) DUF2202 PF09968.4 gi|89256775|ref|YP_514137.1| - 0.00011 21.8 0.4 0.00027 20.6 0.3 1.6 1 1 0 1 1 1 1 Uncharacterized protein domain (DUF2202) DUF455 PF04305.9 gi|89256775|ref|YP_514137.1| - 0.0011 18.3 2.5 0.0018 17.5 1.8 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF455) Rubrerythrin PF02915.12 gi|89256775|ref|YP_514137.1| - 0.0014 18.9 2.2 0.0021 18.3 1.5 1.4 1 0 0 1 1 1 1 Rubrerythrin PNP_UDP_1 PF01048.15 gi|89256776|ref|YP_514138.1| - 1.1e-39 135.8 0.0 1.4e-39 135.4 0.0 1.1 1 0 0 1 1 1 1 Phosphorylase superfamily dCMP_cyt_deam_1 PF00383.17 gi|89256777|ref|YP_514139.1| - 8e-14 51.1 0.1 1e-13 50.8 0.1 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region dCMP_cyt_deam_2 PF08211.6 gi|89256777|ref|YP_514139.1| - 4.2e-09 36.4 0.1 5e-09 36.2 0.1 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region LmjF365940-deam PF14421.1 gi|89256777|ref|YP_514139.1| - 8.3e-05 22.0 0.3 0.0059 16.0 0.0 2.0 1 1 1 2 2 2 2 A distinct subfamily of CDD/CDA-like deaminases DHquinase_I PF01487.10 gi|89256777|ref|YP_514139.1| - 0.019 14.6 0.0 0.025 14.2 0.0 1.1 1 0 0 1 1 1 0 Type I 3-dehydroquinase FAD-oxidase_C PF02913.14 gi|89256778|ref|YP_514140.1| - 7e-46 156.5 0.0 9.7e-46 156.0 0.0 1.2 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.18 gi|89256778|ref|YP_514140.1| - 3.5e-29 101.0 0.0 6e-29 100.2 0.0 1.4 1 0 0 1 1 1 1 FAD binding domain Fer4_8 PF13183.1 gi|89256778|ref|YP_514140.1| - 2.1e-05 24.4 0.4 4.9e-05 23.2 0.3 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|89256778|ref|YP_514140.1| - 5.6e-05 22.8 1.9 0.00015 21.4 1.3 1.7 1 0 0 1 1 1 1 4Fe-4S binding domain Fer4_18 PF13746.1 gi|89256778|ref|YP_514140.1| - 0.00024 21.4 0.4 0.0014 18.9 0.1 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|89256778|ref|YP_514140.1| - 0.0014 18.7 1.2 0.0047 17.1 0.8 1.8 1 0 0 1 1 1 1 4Fe-4S binding domain Fer4_9 PF13187.1 gi|89256778|ref|YP_514140.1| - 0.0038 17.4 0.0 0.014 15.6 0.0 1.9 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|89256778|ref|YP_514140.1| - 0.0048 17.2 0.7 0.019 15.2 0.6 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_20 PF14691.1 gi|89256778|ref|YP_514140.1| - 0.005 16.4 0.1 0.016 14.7 0.0 1.8 1 0 0 1 1 1 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_10 PF13237.1 gi|89256778|ref|YP_514140.1| - 0.0064 16.2 0.1 0.02 14.7 0.1 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|89256778|ref|YP_514140.1| - 0.0065 16.0 3.1 0.015 14.9 2.2 1.6 1 0 0 1 1 1 1 4Fe-4S binding domain Fer4_6 PF12837.2 gi|89256778|ref|YP_514140.1| - 0.0094 15.7 2.4 0.026 14.3 1.7 1.7 1 0 0 1 1 1 1 4Fe-4S binding domain Fer4_7 PF12838.2 gi|89256778|ref|YP_514140.1| - 0.014 15.7 3.0 0.039 14.3 2.1 1.8 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|89256778|ref|YP_514140.1| - 0.016 15.0 0.6 0.016 15.0 0.4 2.3 3 0 0 3 3 2 0 4Fe-4S dicluster domain Metalloenzyme PF01676.13 gi|89256779|ref|YP_514141.1| - 1.1e-89 300.1 0.6 1.3e-89 299.9 0.4 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily iPGM_N PF06415.8 gi|89256779|ref|YP_514141.1| - 1.1e-87 293.1 1.4 1.4e-87 292.6 0.9 1.2 1 0 0 1 1 1 1 BPG-independent PGAM N-terminus (iPGM_N) Phosphodiest PF01663.17 gi|89256779|ref|YP_514141.1| - 2.1e-09 37.1 0.0 3.7e-09 36.3 0.0 1.3 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.18 gi|89256779|ref|YP_514141.1| - 1.1e-06 28.0 0.1 2.3e-05 23.7 0.0 2.5 3 0 0 3 3 3 1 Sulfatase Polysacc_deac_2 PF04748.8 gi|89256779|ref|YP_514141.1| - 0.1 11.5 0.0 8.1 5.3 0.0 2.3 2 0 0 2 2 2 0 Divergent polysaccharide deacetylase tRNA-synt_2b PF00587.20 gi|89256780|ref|YP_514142.1| - 6e-38 130.1 0.1 1.9e-37 128.4 0.0 1.9 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.17 gi|89256780|ref|YP_514142.1| - 7.6e-27 93.4 9.3 7.6e-27 93.4 6.4 1.8 2 0 0 2 2 2 1 Seryl-tRNA synthetase N-terminal domain Mnd1 PF03962.10 gi|89256780|ref|YP_514142.1| - 0.0044 16.7 5.6 0.01 15.5 3.9 1.5 1 0 0 1 1 1 1 Mnd1 family Tropomyosin_1 PF12718.2 gi|89256780|ref|YP_514142.1| - 0.067 13.0 9.9 0.13 12.0 6.9 1.5 1 0 0 1 1 1 0 Tropomyosin like DUF342 PF03961.8 gi|89256780|ref|YP_514142.1| - 0.071 11.5 4.5 0.11 10.9 3.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF342) Spectrin PF00435.16 gi|89256780|ref|YP_514142.1| - 0.089 13.0 8.1 0.33 11.2 5.6 2.0 1 0 0 1 1 1 0 Spectrin repeat DUF4201 PF13870.1 gi|89256780|ref|YP_514142.1| - 0.11 11.9 10.2 0.69 9.3 4.8 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4201) IncA PF04156.9 gi|89256780|ref|YP_514142.1| - 0.15 11.5 7.2 0.26 10.8 4.6 1.6 2 0 0 2 2 2 0 IncA protein PEPcase PF00311.12 gi|89256780|ref|YP_514142.1| - 0.31 8.8 3.2 0.44 8.3 2.2 1.1 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxylase Atg14 PF10186.4 gi|89256780|ref|YP_514142.1| - 0.31 9.9 4.1 0.59 9.0 2.9 1.4 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 YPEB PF14620.1 gi|89256780|ref|YP_514142.1| - 0.37 9.7 6.0 0.29 10.1 1.6 2.1 1 1 1 2 2 2 0 YpeB sporulation Fmp27_WPPW PF10359.4 gi|89256780|ref|YP_514142.1| - 0.41 9.0 7.5 0.13 10.6 3.0 1.6 2 0 0 2 2 2 0 RNA pol II promoter Fmp27 protein domain LOH1CR12 PF10158.4 gi|89256780|ref|YP_514142.1| - 1.1 9.0 4.7 0.41 10.4 1.0 2.0 3 0 0 3 3 2 0 Tumour suppressor protein NPV_P10 PF05531.7 gi|89256780|ref|YP_514142.1| - 1.2 9.4 6.0 4.8 7.5 3.7 2.3 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein V_ATPase_I PF01496.14 gi|89256780|ref|YP_514142.1| - 2 6.1 6.6 4.3 5.0 4.5 1.5 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF4140 PF13600.1 gi|89256780|ref|YP_514142.1| - 3 8.3 7.9 9.7 6.6 1.8 2.5 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) TMPIT PF07851.8 gi|89256780|ref|YP_514142.1| - 3.3 6.6 5.9 5.3 6.0 4.1 1.2 1 0 0 1 1 1 0 TMPIT-like protein Syntaxin PF00804.20 gi|89256780|ref|YP_514142.1| - 5.2 7.2 11.9 5 7.3 1.6 2.8 2 1 0 2 2 2 0 Syntaxin OmpH PF03938.9 gi|89256780|ref|YP_514142.1| - 6 6.7 11.7 12 5.8 8.1 1.5 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) ROK PF00480.15 gi|89256781|ref|YP_514143.1| - 5.7e-50 169.6 0.4 7.4e-50 169.2 0.3 1.2 1 0 0 1 1 1 1 ROK family Polysacc_synt PF01943.12 gi|89256782|ref|YP_514144.1| - 1.4e-11 44.1 31.8 1.4e-11 44.1 22.0 2.1 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|89256782|ref|YP_514144.1| - 4.1e-10 39.5 24.2 4.1e-10 39.5 16.8 2.4 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|89256782|ref|YP_514144.1| - 1.1e-06 28.5 12.6 1.1e-06 28.5 8.7 4.8 2 2 3 5 5 5 1 Polysaccharide biosynthesis C-terminal domain E1-E2_ATPase PF00122.15 gi|89256782|ref|YP_514144.1| - 3.2 6.7 17.0 0.011 14.8 1.2 2.8 1 1 1 2 2 2 0 E1-E2 ATPase Prominin PF05478.6 gi|89256783|ref|YP_514145.1| - 0.0025 15.4 9.3 0.0032 15.1 6.4 1.1 1 0 0 1 1 1 1 Prominin Apolipoprotein PF01442.13 gi|89256783|ref|YP_514145.1| - 0.0064 16.0 13.6 0.016 14.7 9.4 1.6 1 1 0 1 1 1 1 Apolipoprotein A1/A4/E domain LMBR1 PF04791.11 gi|89256783|ref|YP_514145.1| - 0.14 10.7 8.5 0.16 10.4 5.9 1.0 1 0 0 1 1 1 0 LMBR1-like membrane protein DUF4179 PF13786.1 gi|89256783|ref|YP_514145.1| - 0.16 12.2 8.9 0.12 12.5 1.9 3.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4179) Fzo_mitofusin PF04799.8 gi|89256783|ref|YP_514145.1| - 0.48 9.7 12.9 0.13 11.6 2.2 2.2 1 1 1 2 2 2 0 fzo-like conserved region ApoLp-III PF07464.6 gi|89256783|ref|YP_514145.1| - 0.53 10.3 22.0 7.8 6.5 5.5 2.1 1 1 1 2 2 2 0 Apolipophorin-III precursor (apoLp-III) Exonuc_VII_L PF02601.10 gi|89256783|ref|YP_514145.1| - 0.64 9.1 15.3 0.31 10.2 8.7 1.7 1 1 0 1 1 1 0 Exonuclease VII, large subunit HAUS-augmin3 PF14932.1 gi|89256783|ref|YP_514145.1| - 0.71 9.0 13.4 0.81 8.8 9.3 1.1 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 3 DUF883 PF05957.8 gi|89256783|ref|YP_514145.1| - 0.81 10.1 17.1 2.7 8.4 1.5 2.6 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF883) DUF1043 PF06295.7 gi|89256783|ref|YP_514145.1| - 0.93 9.1 8.7 2 8.0 5.9 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1043) COG5 PF10392.4 gi|89256783|ref|YP_514145.1| - 0.97 9.4 13.5 0.48 10.3 0.6 2.2 1 1 1 2 2 2 0 Golgi transport complex subunit 5 Asp-B-Hydro_N PF05279.6 gi|89256783|ref|YP_514145.1| - 1.2 8.9 13.1 1.4 8.6 9.1 1.1 1 0 0 1 1 1 0 Aspartyl beta-hydroxylase N-terminal region Phasin PF05597.6 gi|89256783|ref|YP_514145.1| - 1.6 8.5 15.8 8 6.2 6.5 2.3 1 1 1 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) LUC7 PF03194.10 gi|89256783|ref|YP_514145.1| - 1.9 7.9 15.3 2.3 7.6 10.6 1.1 1 0 0 1 1 1 0 LUC7 N_terminus Baculo_PEP_C PF04513.7 gi|89256783|ref|YP_514145.1| - 2.3 8.0 16.9 0.35 10.6 4.0 2.1 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus MIF4G_like_2 PF09090.6 gi|89256783|ref|YP_514145.1| - 2.4 7.2 9.8 0.92 8.6 5.0 1.5 1 1 1 2 2 2 0 MIF4G like DUF1484 PF07363.6 gi|89256783|ref|YP_514145.1| - 2.5 8.4 12.0 0.52 10.6 1.5 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1484) DUF1664 PF07889.7 gi|89256783|ref|YP_514145.1| - 5.1 6.9 15.3 3.2 7.5 2.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) ATP-synt_B PF00430.13 gi|89256783|ref|YP_514145.1| - 5.1 6.9 24.5 0.81 9.4 9.8 2.2 1 1 1 2 2 2 0 ATP synthase B/B' CF(0) MRP-S31 PF15433.1 gi|89256783|ref|YP_514145.1| - 5.3 6.3 17.8 7.6 5.8 12.3 1.2 1 0 0 1 1 1 0 Mitochondrial 28S ribosomal protein S31 OmpH PF03938.9 gi|89256783|ref|YP_514145.1| - 6.3 6.7 26.3 0.69 9.8 8.7 2.1 1 1 1 2 2 2 0 Outer membrane protein (OmpH-like) Sec20 PF03908.8 gi|89256783|ref|YP_514145.1| - 9.8 5.9 9.2 0.68 9.6 0.8 2.4 2 1 0 2 2 2 0 Sec20 ABC_tran PF00005.22 gi|89256784|ref|YP_514146.1| - 1.4e-29 103.1 0.7 2.6e-29 102.2 0.5 1.5 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.18 gi|89256784|ref|YP_514146.1| - 1e-16 61.1 16.1 2.3e-16 60.0 11.1 1.6 1 0 0 1 1 1 1 ABC transporter transmembrane region AAA_21 PF13304.1 gi|89256784|ref|YP_514146.1| - 4.8e-07 30.0 12.9 3.1e-06 27.3 5.2 3.1 1 1 1 2 2 2 1 AAA domain SMC_N PF02463.14 gi|89256784|ref|YP_514146.1| - 6.1e-07 28.8 1.2 8.3e-05 21.9 0.1 2.3 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|89256784|ref|YP_514146.1| - 2e-06 27.0 0.1 3.8e-06 26.1 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 Dynamin_N PF00350.18 gi|89256784|ref|YP_514146.1| - 0.00023 21.0 1.7 0.00031 20.6 0.2 2.0 2 1 0 2 2 1 1 Dynamin family AAA_15 PF13175.1 gi|89256784|ref|YP_514146.1| - 0.00034 19.8 16.9 0.0016 17.6 0.0 2.8 2 1 1 3 3 3 2 AAA ATPase domain T2SE PF00437.15 gi|89256784|ref|YP_514146.1| - 0.00036 19.5 0.0 0.0007 18.5 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein ResIII PF04851.10 gi|89256784|ref|YP_514146.1| - 0.00038 20.3 0.9 0.1 12.3 0.1 2.6 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_16 PF13191.1 gi|89256784|ref|YP_514146.1| - 0.00054 20.0 0.0 0.001 19.0 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain FtsK_SpoIIIE PF01580.13 gi|89256784|ref|YP_514146.1| - 0.0024 17.3 0.0 0.0043 16.5 0.0 1.3 1 0 0 1 1 1 1 FtsK/SpoIIIE family AAA_22 PF13401.1 gi|89256784|ref|YP_514146.1| - 0.0036 17.4 1.6 0.07 13.2 1.1 2.4 1 1 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.18 gi|89256784|ref|YP_514146.1| - 0.0042 17.0 2.4 0.018 15.0 1.6 2.2 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_29 PF13555.1 gi|89256784|ref|YP_514146.1| - 0.0053 16.2 0.1 0.012 15.1 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_17 PF13207.1 gi|89256784|ref|YP_514146.1| - 0.006 17.3 0.0 0.015 16.0 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|89256784|ref|YP_514146.1| - 0.0064 16.3 0.0 0.015 15.1 0.0 1.7 1 1 0 1 1 1 1 AAA domain MobB PF03205.9 gi|89256784|ref|YP_514146.1| - 0.0067 16.1 0.2 0.02 14.5 0.1 1.8 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_28 PF13521.1 gi|89256784|ref|YP_514146.1| - 0.0088 16.0 0.4 0.017 15.1 0.2 1.4 1 0 0 1 1 1 1 AAA domain Septin PF00735.13 gi|89256784|ref|YP_514146.1| - 0.0092 15.0 0.3 0.021 13.8 0.0 1.7 2 0 0 2 2 2 1 Septin Miro PF08477.8 gi|89256784|ref|YP_514146.1| - 0.016 15.6 0.0 0.042 14.3 0.0 1.8 1 0 0 1 1 1 0 Miro-like protein cobW PF02492.14 gi|89256784|ref|YP_514146.1| - 0.016 14.6 0.2 0.032 13.6 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain TrwB_AAD_bind PF10412.4 gi|89256784|ref|YP_514146.1| - 0.017 13.7 0.6 0.032 12.8 0.0 1.7 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain Zeta_toxin PF06414.7 gi|89256784|ref|YP_514146.1| - 0.018 14.1 0.0 0.036 13.1 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_18 PF13238.1 gi|89256784|ref|YP_514146.1| - 0.02 15.1 2.2 0.18 12.0 1.5 2.3 1 1 0 1 1 1 0 AAA domain RuvB_N PF05496.7 gi|89256784|ref|YP_514146.1| - 0.021 13.8 0.2 2.4 7.1 0.0 2.9 3 1 1 4 4 4 0 Holliday junction DNA helicase ruvB N-terminus IstB_IS21 PF01695.12 gi|89256784|ref|YP_514146.1| - 0.022 14.1 0.1 5.2 6.4 0.0 2.4 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_14 PF13173.1 gi|89256784|ref|YP_514146.1| - 0.061 13.2 0.5 0.51 10.2 0.0 2.7 3 0 0 3 3 3 0 AAA domain DUF3316 PF11777.3 gi|89256784|ref|YP_514146.1| - 0.062 13.0 0.0 0.15 11.8 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3316) SRP54 PF00448.17 gi|89256784|ref|YP_514146.1| - 0.14 11.5 1.4 0.93 8.8 0.2 2.3 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain ABC_tran PF00005.22 gi|89256785|ref|YP_514147.1| - 8.1e-29 100.6 0.1 1.4e-28 99.9 0.1 1.4 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.18 gi|89256785|ref|YP_514147.1| - 6e-11 42.2 19.4 1.2e-10 41.2 13.4 1.6 1 1 0 1 1 1 1 ABC transporter transmembrane region SMC_N PF02463.14 gi|89256785|ref|YP_514147.1| - 5.1e-08 32.4 0.1 5.1e-08 32.4 0.1 1.9 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain DUF87 PF01935.12 gi|89256785|ref|YP_514147.1| - 0.0048 16.7 1.5 0.03 14.1 0.0 2.3 2 0 0 2 2 2 1 Domain of unknown function DUF87 Stn1_C PF12659.2 gi|89256785|ref|YP_514147.1| - 0.022 14.5 0.7 0.74 9.6 0.0 2.6 2 0 0 2 2 2 0 Telomere capping C-terminal wHTH AAA_22 PF13401.1 gi|89256785|ref|YP_514147.1| - 0.031 14.4 1.5 0.071 13.2 0.1 2.3 2 1 0 2 2 2 0 AAA domain IstB_IS21 PF01695.12 gi|89256785|ref|YP_514147.1| - 0.054 12.8 0.2 6.4 6.1 0.0 2.9 3 1 0 3 3 3 0 IstB-like ATP binding protein DUF258 PF03193.11 gi|89256785|ref|YP_514147.1| - 0.069 12.3 0.0 0.15 11.2 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function, DUF258 DUF2422 PF10337.4 gi|89256785|ref|YP_514147.1| - 0.083 11.6 3.8 0.14 10.9 2.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2422) AAA_17 PF13207.1 gi|89256785|ref|YP_514147.1| - 0.13 13.0 0.0 0.33 11.7 0.0 1.9 1 1 0 1 1 1 0 AAA domain SapB_1 PF05184.10 gi|89256785|ref|YP_514147.1| - 0.22 11.3 0.6 0.55 10.1 0.4 1.7 1 0 0 1 1 1 0 Saposin-like type B, region 1 DUF21 PF01595.15 gi|89256785|ref|YP_514147.1| - 0.52 9.5 12.4 0.33 10.2 0.8 2.8 1 1 1 2 2 2 0 Domain of unknown function DUF21 SDF PF00375.13 gi|89256786|ref|YP_514148.1| - 4.8e-106 354.7 45.5 5.4e-106 354.6 31.5 1.0 1 0 0 1 1 1 1 Sodium:dicarboxylate symporter family Ribonuc_L-PSP PF01042.16 gi|89256787|ref|YP_514149.1| - 1.9e-43 147.0 0.1 2.1e-43 146.9 0.1 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP YjgF_endoribonc PF14588.1 gi|89256787|ref|YP_514149.1| - 0.027 14.4 0.1 0.039 13.8 0.0 1.4 1 1 0 1 1 1 0 YjgF/chorismate_mutase-like, putative endoribonuclease Eclosion PF04736.7 gi|89256787|ref|YP_514149.1| - 0.052 12.9 0.0 0.1 12.0 0.0 1.5 1 0 0 1 1 1 0 Eclosion hormone Sulfate_transp PF00916.15 gi|89256788|ref|YP_514150.1| - 1.6e-58 197.9 17.1 1.5e-52 178.3 6.9 4.1 2 2 2 4 4 4 2 Sulfate transporter family Sulfate_tra_GLY PF13792.1 gi|89256788|ref|YP_514150.1| - 7e-18 64.0 4.7 7e-18 64.0 3.2 4.2 5 1 0 5 5 5 1 Sulfate transporter N-terminal domain with GLY motif STAS PF01740.16 gi|89256788|ref|YP_514150.1| - 1.4e-10 40.6 0.0 2.8e-10 39.6 0.0 1.5 1 0 0 1 1 1 1 STAS domain DDE_Tnp_1_2 PF13586.1 gi|89256789|ref|YP_514151.1| - 1.7e-16 60.1 0.2 3.3e-16 59.2 0.1 1.5 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|89256789|ref|YP_514151.1| - 8.6e-14 51.5 1.2 3.2e-13 49.7 0.8 1.7 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|89256789|ref|YP_514151.1| - 1.1e-09 38.2 0.1 1.3e-09 37.9 0.1 1.1 1 0 0 1 1 1 1 Transposase DDE domain DUF4483 PF14825.1 gi|89256789|ref|YP_514151.1| - 0.13 11.9 0.1 0.16 11.5 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4483) DUF3716 PF12511.3 gi|89256789|ref|YP_514151.1| - 0.15 11.7 0.0 0.3 10.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3716) MFS_1 PF07690.11 gi|89256790|ref|YP_514152.1| - 1e-21 77.0 37.6 1e-21 77.0 26.0 2.0 1 1 1 2 2 2 1 Major Facilitator Superfamily HD_assoc PF13286.1 gi|89256791|ref|YP_514153.1| - 5.8e-18 64.9 0.0 1.3e-17 63.8 0.0 1.6 1 0 0 1 1 1 1 Phosphohydrolase-associated domain HD PF01966.17 gi|89256791|ref|YP_514153.1| - 4.5e-16 58.9 0.8 1.1e-15 57.7 0.6 1.8 1 1 0 1 1 1 1 HD domain HDOD PF08668.7 gi|89256791|ref|YP_514153.1| - 0.0092 15.2 0.0 0.017 14.3 0.0 1.4 1 0 0 1 1 1 1 HDOD domain PDEase_I PF00233.14 gi|89256791|ref|YP_514153.1| - 0.045 13.5 0.4 0.1 12.3 0.1 1.7 2 0 0 2 2 2 0 3'5'-cyclic nucleotide phosphodiesterase peroxidase PF00141.18 gi|89256792|ref|YP_514154.1| - 1.7e-90 302.5 0.0 5.2e-52 176.6 0.0 2.4 2 0 0 2 2 2 2 Peroxidase DDE_3 PF13358.1 gi|89256793|ref|YP_514155.1| - 1.7e-31 108.9 0.0 2.8e-31 108.2 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.11 gi|89256793|ref|YP_514155.1| - 1.5e-07 31.0 0.2 1.1e-06 28.3 0.1 2.1 2 0 0 2 2 2 1 Transposase DDE_1 PF03184.14 gi|89256793|ref|YP_514155.1| - 5.8e-07 28.8 0.1 9.5e-07 28.1 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_28 PF13518.1 gi|89256793|ref|YP_514155.1| - 0.00058 19.8 0.0 0.0018 18.2 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain rve PF00665.21 gi|89256793|ref|YP_514155.1| - 0.00072 19.6 0.0 0.0013 18.7 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.1 gi|89256793|ref|YP_514155.1| - 0.0087 15.6 0.0 0.029 14.0 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.1 gi|89256793|ref|YP_514155.1| - 0.02 15.0 0.0 0.032 14.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix DDE_Tnp_ISAZ013 PF07592.6 gi|89256793|ref|YP_514155.1| - 0.039 12.6 0.6 0.32 9.7 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain adh_short_C2 PF13561.1 gi|89256794|ref|YP_514156.1| - 1.1e-15 58.0 0.0 1.2e-15 57.9 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|89256794|ref|YP_514156.1| - 2.6e-06 27.4 0.0 3.3e-06 27.1 0.0 1.2 1 0 0 1 1 1 1 short chain dehydrogenase DUF1776 PF08643.5 gi|89256794|ref|YP_514156.1| - 0.037 13.1 0.0 0.041 13.0 0.0 1.1 1 0 0 1 1 1 0 Fungal family of unknown function (DUF1776) adh_short PF00106.20 gi|89256795|ref|YP_514157.1| - 9.8e-09 35.3 0.0 1.2e-08 35.0 0.0 1.0 1 0 0 1 1 1 1 short chain dehydrogenase Epimerase PF01370.16 gi|89256795|ref|YP_514157.1| - 6.2e-07 29.0 0.0 6.9e-07 28.9 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family adh_short_C2 PF13561.1 gi|89256795|ref|YP_514157.1| - 2.5e-06 27.4 0.0 3.2e-06 27.0 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|89256795|ref|YP_514157.1| - 4.3e-06 26.5 0.0 5.2e-06 26.2 0.0 1.1 1 0 0 1 1 1 1 KR domain Eno-Rase_NADH_b PF12242.3 gi|89256795|ref|YP_514157.1| - 0.0014 18.4 0.6 0.0029 17.3 0.4 1.6 1 1 0 1 1 1 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase NAD_binding_10 PF13460.1 gi|89256795|ref|YP_514157.1| - 0.0022 18.0 0.3 0.0035 17.3 0.2 1.4 1 1 0 1 1 1 1 NADH(P)-binding 3HCDH_N PF02737.13 gi|89256795|ref|YP_514157.1| - 0.0032 17.1 0.0 0.0036 16.9 0.0 1.1 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Polysacc_synt_2 PF02719.10 gi|89256795|ref|YP_514157.1| - 0.0039 16.1 0.0 0.0045 15.9 0.0 1.1 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein F420_oxidored PF03807.12 gi|89256795|ref|YP_514157.1| - 0.0072 16.7 0.2 0.01 16.2 0.1 1.2 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent RmlD_sub_bind PF04321.12 gi|89256795|ref|YP_514157.1| - 0.032 13.1 0.1 0.055 12.3 0.1 1.5 1 1 0 1 1 1 0 RmlD substrate binding domain NmrA PF05368.8 gi|89256795|ref|YP_514157.1| - 0.037 13.2 0.0 0.042 13.0 0.0 1.1 1 0 0 1 1 1 0 NmrA-like family PALP PF00291.20 gi|89256795|ref|YP_514157.1| - 0.056 12.6 0.1 0.062 12.5 0.0 1.0 1 0 0 1 1 1 0 Pyridoxal-phosphate dependent enzyme DUF1548 PF07579.6 gi|89256795|ref|YP_514157.1| - 0.069 13.2 0.1 0.098 12.7 0.1 1.2 1 0 0 1 1 1 0 Domain of Unknown Function (DUF1548) Peptidase_S13 PF02113.10 gi|89256796|ref|YP_514158.1| - 3e-26 91.9 0.0 3.5e-26 91.7 0.0 1.0 1 0 0 1 1 1 1 D-Ala-D-Ala carboxypeptidase 3 (S13) family Peptidase_S11 PF00768.15 gi|89256796|ref|YP_514158.1| - 0.0018 17.5 0.2 0.0034 16.7 0.1 1.4 1 1 0 1 1 1 1 D-alanyl-D-alanine carboxypeptidase MFS_1 PF07690.11 gi|89256797|ref|YP_514159.1| - 3.4e-38 131.2 40.5 3.4e-38 131.2 28.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily GDPD PF03009.12 gi|89256798|ref|YP_514160.1| - 6.2e-40 137.3 1.7 7.5e-40 137.0 1.2 1.1 1 0 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family GDPD_2 PF13653.1 gi|89256798|ref|YP_514160.1| - 0.00011 22.3 4.4 0.00047 20.2 2.4 2.7 3 1 0 3 3 3 1 Glycerophosphoryl diester phosphodiesterase family PGA_cap PF09587.5 gi|89256798|ref|YP_514160.1| - 0.0081 15.5 0.0 0.014 14.7 0.0 1.3 1 0 0 1 1 1 1 Bacterial capsule synthesis protein PGA_cap DUF1108 PF06531.6 gi|89256798|ref|YP_514160.1| - 0.026 14.6 0.5 0.094 12.8 0.3 2.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1108) Anp1 PF03452.9 gi|89256798|ref|YP_514160.1| - 0.028 13.5 0.1 0.041 13.0 0.1 1.2 1 0 0 1 1 1 0 Anp1 PI-PLC-X PF00388.14 gi|89256798|ref|YP_514160.1| - 0.069 12.5 0.0 0.29 10.5 0.0 2.0 2 0 0 2 2 2 0 Phosphatidylinositol-specific phospholipase C, X domain HlyD_2 PF12700.2 gi|89256799|ref|YP_514161.1| - 3.3e-14 52.8 10.7 3.9e-14 52.5 7.4 1.1 1 0 0 1 1 1 1 HlyD family secretion protein HlyD_3 PF13437.1 gi|89256799|ref|YP_514161.1| - 5.8e-13 49.0 0.0 1.9e-12 47.4 0.0 2.0 1 1 0 1 1 1 1 HlyD family secretion protein HlyD PF00529.15 gi|89256799|ref|YP_514161.1| - 2.4e-05 23.8 6.5 0.00018 20.9 4.5 2.5 1 1 0 1 1 1 1 HlyD family secretion protein Biotin_lipoyl PF00364.17 gi|89256799|ref|YP_514161.1| - 0.00046 19.7 0.1 0.99 9.0 0.0 3.2 3 0 0 3 3 3 2 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.1 gi|89256799|ref|YP_514161.1| - 0.001 18.6 0.1 0.0041 16.7 0.0 2.3 2 1 0 2 2 2 1 Biotin-lipoyl like Dynein_heavy PF03028.10 gi|89256799|ref|YP_514161.1| - 0.015 13.3 3.8 0.049 11.6 0.1 2.3 1 1 1 2 2 2 0 Dynein heavy chain and region D6 of dynein motor Prok-TraM PF09228.5 gi|89256799|ref|YP_514161.1| - 0.06 13.5 2.0 0.078 13.1 0.5 1.8 2 0 0 2 2 2 0 Prokaryotic Transcriptional repressor TraM ABC_tran PF00005.22 gi|89256800|ref|YP_514162.1| - 5.9e-30 104.3 0.0 1.1e-29 103.5 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|89256800|ref|YP_514162.1| - 5.7e-11 42.9 1.1 1.6e-07 31.5 0.0 2.6 2 1 1 3 3 3 2 AAA domain AAA_15 PF13175.1 gi|89256800|ref|YP_514162.1| - 0.00012 21.2 2.9 0.0011 18.0 0.0 2.9 3 1 0 3 3 3 1 AAA ATPase domain SMC_N PF02463.14 gi|89256800|ref|YP_514162.1| - 0.00082 18.6 0.1 0.44 9.7 0.0 2.3 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.1 gi|89256800|ref|YP_514162.1| - 0.046 13.6 0.0 0.26 11.2 0.0 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.1 gi|89256800|ref|YP_514162.1| - 0.073 12.6 0.1 0.26 10.8 0.0 1.9 2 0 0 2 2 2 0 P-loop containing region of AAA domain THDPS_N_2 PF14805.1 gi|89256800|ref|YP_514162.1| - 0.076 12.8 0.0 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 Tetrahydrodipicolinate N-succinyltransferase N-terminal MutS_V PF00488.16 gi|89256800|ref|YP_514162.1| - 0.082 12.2 0.0 3.3 7.0 0.0 2.4 2 0 0 2 2 2 0 MutS domain V Mg_chelatase PF01078.16 gi|89256800|ref|YP_514162.1| - 0.089 11.9 0.0 0.6 9.2 0.0 2.0 1 1 1 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_22 PF13401.1 gi|89256800|ref|YP_514162.1| - 0.089 12.9 0.0 0.17 12.0 0.0 1.6 1 1 0 1 1 1 0 AAA domain Cdc6_C PF09079.6 gi|89256800|ref|YP_514162.1| - 0.1 12.3 0.0 0.3 10.8 0.0 1.8 1 0 0 1 1 1 0 CDC6, C terminal AAA_23 PF13476.1 gi|89256800|ref|YP_514162.1| - 0.1 12.9 5.7 0.054 13.8 0.6 2.4 2 1 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|89256800|ref|YP_514162.1| - 0.12 12.2 0.1 0.18 11.7 0.1 1.5 1 1 0 1 1 1 0 AAA domain ABC2_membrane_3 PF12698.2 gi|89256801|ref|YP_514163.1| - 1.2e-09 37.7 0.9 1.4e-09 37.5 0.6 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein 5TM-5TMR_LYT PF07694.7 gi|89256801|ref|YP_514163.1| - 0.072 12.4 0.2 0.11 11.8 0.1 1.2 1 0 0 1 1 1 0 5TMR of 5TMR-LYT ABC2_membrane_2 PF12679.2 gi|89256801|ref|YP_514163.1| - 0.089 11.6 0.0 0.089 11.6 0.0 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein Sigma54_CBD PF04963.8 gi|89256801|ref|YP_514163.1| - 0.094 12.1 0.0 0.13 11.7 0.0 1.2 1 0 0 1 1 1 0 Sigma-54 factor, core binding domain ABC2_membrane PF01061.19 gi|89256802|ref|YP_514164.1| - 5.5e-29 100.8 20.8 5.5e-29 100.8 14.4 1.6 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|89256802|ref|YP_514164.1| - 2.1e-23 82.9 30.8 2.3e-23 82.7 21.4 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|89256802|ref|YP_514164.1| - 1.1e-19 70.3 22.1 1.3e-19 70.1 15.3 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|89256802|ref|YP_514164.1| - 3.1e-08 33.0 28.4 3.5e-08 32.8 19.7 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein DDE_Tnp_1_2 PF13586.1 gi|89256803|ref|YP_514165.1| - 2.2e-16 59.7 0.4 5.7e-16 58.4 0.1 1.8 3 0 0 3 3 3 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|89256803|ref|YP_514165.1| - 2e-13 50.3 1.1 7.2e-13 48.5 0.7 1.7 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|89256803|ref|YP_514165.1| - 1.9e-09 37.4 0.1 2.5e-09 37.0 0.1 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF4096 PF13340.1 gi|89256803|ref|YP_514165.1| - 0.00055 19.7 0.0 0.0011 18.8 0.0 1.5 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) CHMI PF02962.10 gi|89256804|ref|YP_514166.1| - 0.042 13.9 0.0 0.049 13.7 0.0 1.2 1 0 0 1 1 1 0 5-carboxymethyl-2-hydroxymuconate isomerase RPM2 PF08579.6 gi|89256804|ref|YP_514166.1| - 0.05 13.7 0.6 0.074 13.1 0.4 1.2 1 0 0 1 1 1 0 Mitochondrial ribonuclease P subunit (RPM2) DUF3053 PF11254.3 gi|89256804|ref|YP_514166.1| - 0.071 12.3 0.1 0.083 12.1 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3053) UPRTase PF14681.1 gi|89256805|ref|YP_514167.1| - 1.2e-63 214.0 0.0 1.3e-63 213.9 0.0 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.22 gi|89256805|ref|YP_514167.1| - 6.8e-14 51.6 0.4 1.1e-13 51.0 0.2 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Glyco_hydro_18 PF00704.23 gi|89256806|ref|YP_514168.1| - 2.4e-65 221.2 14.6 2.4e-65 221.2 10.1 2.3 2 0 0 2 2 2 1 Glycosyl hydrolases family 18 CBM_5_12 PF02839.9 gi|89256806|ref|YP_514168.1| - 1.3e-20 72.7 31.8 1.2e-11 43.9 8.5 3.3 3 0 0 3 3 3 2 Carbohydrate binding domain fn3 PF00041.16 gi|89256806|ref|YP_514168.1| - 1.5e-08 34.6 1.5 3.1e-08 33.6 0.4 2.1 2 0 0 2 2 2 1 Fibronectin type III domain Interfer-bind PF09294.5 gi|89256806|ref|YP_514168.1| - 0.059 13.4 0.1 0.17 11.9 0.1 1.7 1 0 0 1 1 1 0 Interferon-alpha/beta receptor, fibronectin type III Aminotran_1_2 PF00155.16 gi|89256807|ref|YP_514169.1| - 6.8e-73 245.6 0.0 7.8e-73 245.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II SHMT PF00464.14 gi|89256807|ref|YP_514169.1| - 4.4e-06 25.3 0.1 1.3e-05 23.7 0.1 1.8 1 1 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_5 PF00266.14 gi|89256807|ref|YP_514169.1| - 8.1e-06 24.8 0.1 7.7e-05 21.5 0.0 2.1 2 0 0 2 2 2 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|89256807|ref|YP_514169.1| - 0.00099 18.3 0.1 0.0023 17.1 0.1 1.5 1 1 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|89256807|ref|YP_514169.1| - 0.0041 15.4 0.0 0.0064 14.8 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme RraB PF06877.6 gi|89256807|ref|YP_514169.1| - 0.065 13.8 0.0 0.2 12.3 0.0 1.8 1 0 0 1 1 1 0 Regulator of ribonuclease activity B Flg_hook PF02120.11 gi|89256807|ref|YP_514169.1| - 0.083 12.5 0.0 0.47 10.1 0.1 2.1 2 0 0 2 2 2 0 Flagellar hook-length control protein FliK ADH_N PF08240.7 gi|89256808|ref|YP_514170.1| - 1.9e-32 111.2 1.5 1.9e-32 111.2 1.1 1.7 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|89256808|ref|YP_514170.1| - 2.6e-23 82.0 0.1 3.8e-23 81.4 0.1 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase CLN3 PF02487.12 gi|89256808|ref|YP_514170.1| - 0.16 10.7 0.2 0.21 10.3 0.2 1.1 1 0 0 1 1 1 0 CLN3 protein Trp_Tyr_perm PF03222.8 gi|89256809|ref|YP_514171.1| - 5.5e-11 41.9 41.7 8.3e-11 41.3 28.9 1.2 1 0 0 1 1 1 1 Tryptophan/tyrosine permease family AA_permease_2 PF13520.1 gi|89256809|ref|YP_514171.1| - 2.3e-09 36.2 34.1 2.3e-09 36.2 23.7 2.2 1 1 1 2 2 2 1 Amino acid permease DUF4175 PF13779.1 gi|89256809|ref|YP_514171.1| - 0.93 7.1 2.2 1.3 6.5 1.6 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4175) IspD PF01128.14 gi|89256810|ref|YP_514172.1| - 8.8e-55 185.6 0.0 9.7e-55 185.4 0.0 1.0 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NTP_transf_3 PF12804.2 gi|89256810|ref|YP_514172.1| - 2.5e-07 30.8 0.0 7.7e-07 29.3 0.0 1.7 1 1 1 2 2 2 1 MobA-like NTP transferase domain DNA_pol3_delta2 PF13177.1 gi|89256810|ref|YP_514172.1| - 0.0078 15.8 0.2 0.049 13.2 0.0 2.0 1 1 1 2 2 2 1 DNA polymerase III, delta subunit DivIC PF04977.10 gi|89256811|ref|YP_514173.1| - 1.1e-16 60.0 1.6 1.4e-16 59.7 1.1 1.2 1 0 0 1 1 1 1 Septum formation initiator DUF1510 PF07423.6 gi|89256811|ref|YP_514173.1| - 0.0013 18.1 0.3 0.0015 17.9 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1510) Pox_LP_H2 PF03356.10 gi|89256811|ref|YP_514173.1| - 0.012 15.2 1.6 0.014 15.1 1.1 1.1 1 0 0 1 1 1 0 Viral late protein H2 DUF3733 PF12534.3 gi|89256811|ref|YP_514173.1| - 0.04 13.2 0.3 0.063 12.5 0.2 1.3 1 0 0 1 1 1 0 Leucine-rich repeat containing protein 8 IpaD PF06511.6 gi|89256811|ref|YP_514173.1| - 0.076 12.0 0.4 0.091 11.7 0.2 1.1 1 0 0 1 1 1 0 Invasion plasmid antigen IpaD Microtub_assoc PF07989.6 gi|89256811|ref|YP_514173.1| - 0.29 10.9 2.0 2.2 8.1 1.6 2.0 1 1 0 1 1 1 0 Microtubule associated Enolase_C PF00113.17 gi|89256812|ref|YP_514174.1| - 9.5e-130 431.8 0.2 1.5e-129 431.2 0.1 1.2 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.11 gi|89256812|ref|YP_514174.1| - 3.7e-58 195.1 0.2 6.1e-58 194.4 0.1 1.4 1 0 0 1 1 1 1 Enolase, N-terminal domain MR_MLE_C PF13378.1 gi|89256812|ref|YP_514174.1| - 0.00044 20.2 0.0 0.0011 18.9 0.0 1.6 1 0 0 1 1 1 1 Enolase C-terminal domain-like MAAL_C PF07476.6 gi|89256812|ref|YP_514174.1| - 0.0014 17.6 0.3 0.011 14.7 0.1 2.3 3 0 0 3 3 3 1 Methylaspartate ammonia-lyase C-terminus MFS_1 PF07690.11 gi|89256813|ref|YP_514175.1| - 2.3e-27 95.6 52.8 6.5e-18 64.5 12.5 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.8 gi|89256813|ref|YP_514175.1| - 1.3e-09 36.6 3.0 1.3e-09 36.6 2.1 2.1 2 0 0 2 2 2 2 Transmembrane secretion effector Sugar_tr PF00083.19 gi|89256813|ref|YP_514175.1| - 0.00018 20.2 39.5 0.00052 18.6 12.8 2.7 1 1 2 3 3 3 2 Sugar (and other) transporter MFS_2 PF13347.1 gi|89256813|ref|YP_514175.1| - 2.6 6.3 44.9 0.21 9.9 10.1 3.2 1 1 0 2 2 2 0 MFS/sugar transport protein NMN_transporter PF04973.7 gi|89256814|ref|YP_514176.1| - 1.3e-42 145.3 29.8 1.3e-42 145.3 20.7 1.4 2 0 0 2 2 2 1 Nicotinamide mononucleotide transporter tRNA_U5-meth_tr PF05958.6 gi|89256815|ref|YP_514177.1| - 1.2e-26 93.2 0.3 2.3e-26 92.3 0.2 1.4 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase Methyltransf_31 PF13847.1 gi|89256815|ref|YP_514177.1| - 9.2e-13 48.0 0.2 6.2e-12 45.3 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain RrnaAD PF00398.15 gi|89256815|ref|YP_514177.1| - 1e-07 31.3 0.0 1.6e-07 30.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase TRAM PF01938.15 gi|89256815|ref|YP_514177.1| - 1.1e-07 31.5 0.6 7e-07 28.9 0.1 2.2 2 0 0 2 2 2 1 TRAM domain Methyltransf_18 PF12847.2 gi|89256815|ref|YP_514177.1| - 3.4e-07 30.8 0.0 7.5e-07 29.7 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.11 gi|89256815|ref|YP_514177.1| - 6.3e-06 25.9 0.1 1.3e-05 24.8 0.1 1.5 1 0 0 1 1 1 1 Met-10+ like-protein MTS PF05175.9 gi|89256815|ref|YP_514177.1| - 7.5e-06 25.4 0.0 1.4e-05 24.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|89256815|ref|YP_514177.1| - 0.00016 21.7 0.0 0.00026 20.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|89256815|ref|YP_514177.1| - 0.00049 20.5 0.0 0.0025 18.2 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|89256815|ref|YP_514177.1| - 0.00063 18.9 0.0 0.0012 18.0 0.0 1.4 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_4 PF02390.12 gi|89256815|ref|YP_514177.1| - 0.00066 18.7 0.1 0.0012 17.9 0.1 1.4 1 0 0 1 1 1 1 Putative methyltransferase PCMT PF01135.14 gi|89256815|ref|YP_514177.1| - 0.0011 18.5 0.0 0.0024 17.4 0.0 1.5 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_25 PF13649.1 gi|89256815|ref|YP_514177.1| - 0.0017 18.6 0.0 0.014 15.7 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|89256815|ref|YP_514177.1| - 0.0092 16.4 0.0 0.032 14.7 0.0 1.9 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|89256815|ref|YP_514177.1| - 0.014 14.9 0.1 0.036 13.6 0.1 1.8 1 1 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Cons_hypoth95 PF03602.10 gi|89256815|ref|YP_514177.1| - 0.02 14.2 0.0 0.037 13.4 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 DOT1 PF08123.8 gi|89256815|ref|YP_514177.1| - 0.023 13.9 0.0 0.04 13.2 0.0 1.3 1 0 0 1 1 1 0 Histone methylation protein DOT1 N6_N4_Mtase PF01555.13 gi|89256815|ref|YP_514177.1| - 0.026 14.0 0.0 0.041 13.3 0.0 1.3 1 0 0 1 1 1 0 DNA methylase Methyltransf_23 PF13489.1 gi|89256815|ref|YP_514177.1| - 0.036 13.7 0.0 0.062 13.0 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain PDGF PF00341.12 gi|89256815|ref|YP_514177.1| - 0.059 13.4 0.1 0.14 12.3 0.1 1.6 1 0 0 1 1 1 0 PDGF/VEGF domain UPF0020 PF01170.13 gi|89256815|ref|YP_514177.1| - 0.11 12.0 0.0 0.2 11.2 0.0 1.4 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 RNA_pol_Rpb6 PF01192.17 gi|89256817|ref|YP_514179.1| - 4.2e-10 39.2 0.3 4.8e-10 39.0 0.2 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb6 RNA_pol_A_bac PF01000.21 gi|89256817|ref|YP_514179.1| - 0.032 14.3 0.4 0.036 14.2 0.3 1.0 1 0 0 1 1 1 0 RNA polymerase Rpb3/RpoA insert domain DUF2357 PF09823.4 gi|89256817|ref|YP_514179.1| - 0.1 11.7 0.5 0.11 11.6 0.3 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF2357) PRK PF00485.13 gi|89256818|ref|YP_514180.1| - 4.7e-41 140.4 0.1 5.7e-41 140.2 0.1 1.1 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family AAA_17 PF13207.1 gi|89256818|ref|YP_514180.1| - 8.5e-07 29.8 0.3 3e-06 28.0 0.2 1.8 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|89256818|ref|YP_514180.1| - 1e-06 29.0 0.4 2.1e-06 28.0 0.3 1.5 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|89256818|ref|YP_514180.1| - 0.0001 22.1 0.0 0.00085 19.2 0.0 2.1 1 1 0 1 1 1 1 AAA domain Pox_A32 PF04665.7 gi|89256818|ref|YP_514180.1| - 0.00062 19.1 0.3 0.0015 17.9 0.0 1.7 2 0 0 2 2 2 1 Poxvirus A32 protein cobW PF02492.14 gi|89256818|ref|YP_514180.1| - 0.0013 18.2 0.1 0.0026 17.2 0.1 1.6 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.9 gi|89256818|ref|YP_514180.1| - 0.0023 17.6 0.4 0.0094 15.6 0.1 2.0 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B T2SE PF00437.15 gi|89256818|ref|YP_514180.1| - 0.0027 16.6 0.1 0.0046 15.8 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein MMR_HSR1 PF01926.18 gi|89256818|ref|YP_514180.1| - 0.0071 16.3 0.6 0.04 13.8 0.4 1.9 1 1 0 1 1 1 1 50S ribosome-binding GTPase Zeta_toxin PF06414.7 gi|89256818|ref|YP_514180.1| - 0.0089 15.1 0.0 0.021 13.9 0.0 1.6 2 0 0 2 2 2 1 Zeta toxin dNK PF01712.14 gi|89256818|ref|YP_514180.1| - 0.0091 15.9 1.0 0.13 12.2 0.1 2.2 2 0 0 2 2 2 1 Deoxynucleoside kinase Thymidylate_kin PF02223.12 gi|89256818|ref|YP_514180.1| - 0.011 15.1 0.1 0.34 10.2 0.0 2.3 2 0 0 2 2 2 0 Thymidylate kinase KAP_NTPase PF07693.9 gi|89256818|ref|YP_514180.1| - 0.012 14.5 0.0 0.012 14.5 0.0 1.2 1 0 0 1 1 1 0 KAP family P-loop domain NACHT PF05729.7 gi|89256818|ref|YP_514180.1| - 0.015 14.9 0.1 0.032 13.8 0.1 1.5 1 0 0 1 1 1 0 NACHT domain NB-ARC PF00931.17 gi|89256818|ref|YP_514180.1| - 0.017 14.0 0.3 0.024 13.4 0.2 1.3 1 0 0 1 1 1 0 NB-ARC domain APS_kinase PF01583.15 gi|89256818|ref|YP_514180.1| - 0.031 13.9 0.0 0.68 9.5 0.0 2.2 2 0 0 2 2 2 0 Adenylylsulphate kinase FtsK_SpoIIIE PF01580.13 gi|89256818|ref|YP_514180.1| - 0.031 13.7 0.8 0.055 12.9 0.5 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family CoaE PF01121.15 gi|89256818|ref|YP_514180.1| - 0.032 13.6 0.6 0.092 12.1 0.4 1.7 1 1 0 1 1 1 0 Dephospho-CoA kinase ABC_tran PF00005.22 gi|89256818|ref|YP_514180.1| - 0.042 14.1 1.4 0.074 13.3 0.9 1.6 1 1 0 1 1 1 0 ABC transporter RNA_helicase PF00910.17 gi|89256818|ref|YP_514180.1| - 0.044 13.9 0.0 0.086 13.0 0.0 1.6 1 0 0 1 1 1 0 RNA helicase ATP-synt_ab PF00006.20 gi|89256818|ref|YP_514180.1| - 0.05 13.0 0.0 0.066 12.6 0.0 1.3 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_22 PF13401.1 gi|89256818|ref|YP_514180.1| - 0.051 13.7 0.1 0.17 12.0 0.0 1.8 1 1 1 2 2 2 0 AAA domain PhoH PF02562.11 gi|89256818|ref|YP_514180.1| - 0.054 12.7 0.0 0.15 11.3 0.0 1.7 2 0 0 2 2 2 0 PhoH-like protein AAA_16 PF13191.1 gi|89256818|ref|YP_514180.1| - 0.066 13.1 0.0 0.09 12.7 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_10 PF12846.2 gi|89256818|ref|YP_514180.1| - 0.066 12.6 0.1 0.13 11.7 0.1 1.7 1 1 0 1 1 1 0 AAA-like domain Miro PF08477.8 gi|89256818|ref|YP_514180.1| - 0.075 13.5 0.0 0.18 12.3 0.0 1.6 1 0 0 1 1 1 0 Miro-like protein DUF2075 PF09848.4 gi|89256818|ref|YP_514180.1| - 0.077 11.9 0.0 0.24 10.3 0.0 1.8 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) DUF87 PF01935.12 gi|89256818|ref|YP_514180.1| - 0.31 10.8 3.1 1.2 8.9 2.2 2.1 1 1 0 1 1 1 0 Domain of unknown function DUF87 DAHP_synth_1 PF00793.15 gi|89256819|ref|YP_514181.1| - 2.8e-83 278.7 0.0 3.4e-83 278.4 0.0 1.0 1 0 0 1 1 1 1 DAHP synthetase I family NeuB PF03102.9 gi|89256819|ref|YP_514181.1| - 0.067 12.3 0.0 0.13 11.3 0.0 1.6 1 1 1 2 2 2 0 NeuB family DUF627 PF04781.7 gi|89256819|ref|YP_514181.1| - 0.14 11.7 0.0 0.27 10.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF627) Fe-S_biosyn PF01521.15 gi|89256820|ref|YP_514182.1| - 1.2e-18 67.1 0.0 1.4e-18 66.8 0.0 1.0 1 0 0 1 1 1 1 Iron-sulphur cluster biosynthesis RNase_PH PF01138.16 gi|89256821|ref|YP_514183.1| - 3.7e-42 143.7 0.0 3.8e-22 79.0 0.0 2.8 3 0 0 3 3 3 2 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.10 gi|89256821|ref|YP_514183.1| - 8.9e-27 92.8 0.3 1.2e-13 50.7 0.0 3.4 3 0 0 3 3 3 2 3' exoribonuclease family, domain 2 PNPase PF03726.9 gi|89256821|ref|YP_514183.1| - 3.1e-20 72.2 1.2 7.3e-20 71.0 0.1 2.3 2 0 0 2 2 2 1 Polyribonucleotide nucleotidyltransferase, RNA binding domain KH_1 PF00013.24 gi|89256821|ref|YP_514183.1| - 6e-10 38.6 1.7 1.3e-09 37.4 1.1 1.7 1 0 0 1 1 1 1 KH domain S1 PF00575.18 gi|89256821|ref|YP_514183.1| - 2.6e-08 33.8 0.3 8e-08 32.2 0.2 1.8 1 0 0 1 1 1 1 S1 RNA binding domain KH_3 PF13014.1 gi|89256821|ref|YP_514183.1| - 0.00011 21.7 0.3 0.00027 20.4 0.2 1.7 1 0 0 1 1 1 1 KH domain KH_2 PF07650.12 gi|89256821|ref|YP_514183.1| - 0.0013 18.2 1.6 0.0045 16.5 1.1 2.0 1 0 0 1 1 1 1 KH domain RecX PF02631.11 gi|89256821|ref|YP_514183.1| - 0.063 13.4 0.1 0.13 12.4 0.0 1.5 1 0 0 1 1 1 0 RecX family DUF2087 PF09860.4 gi|89256821|ref|YP_514183.1| - 0.079 12.7 1.4 0.68 9.7 0.1 2.9 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2087) UME PF08064.8 gi|89256821|ref|YP_514183.1| - 0.34 10.8 1.3 24 4.9 0.0 2.6 2 0 0 2 2 2 0 UME (NUC010) domain Ribosomal_S15 PF00312.17 gi|89256822|ref|YP_514184.1| - 3.1e-29 100.5 3.9 3.5e-29 100.3 2.7 1.0 1 0 0 1 1 1 1 Ribosomal protein S15 Transpeptidase PF00905.17 gi|89256823|ref|YP_514185.1| - 8.1e-66 222.1 0.0 1e-65 221.7 0.0 1.1 1 0 0 1 1 1 1 Penicillin binding protein transpeptidase domain PBP_dimer PF03717.10 gi|89256823|ref|YP_514185.1| - 2.3e-32 112.5 0.1 3.7e-32 111.8 0.0 1.3 1 0 0 1 1 1 1 Penicillin-binding Protein dimerisation domain DUF2633 PF11119.3 gi|89256823|ref|YP_514185.1| - 0.82 9.4 2.6 1.5 8.6 1.8 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2633) FtsL PF04999.8 gi|89256824|ref|YP_514186.1| - 6.3e-13 48.2 0.1 8.1e-13 47.8 0.1 1.2 1 0 0 1 1 1 1 Cell division protein FtsL Tetraspannin PF00335.15 gi|89256824|ref|YP_514186.1| - 0.12 11.5 0.1 0.14 11.4 0.1 1.1 1 0 0 1 1 1 0 Tetraspanin family Methyltransf_5 PF01795.14 gi|89256825|ref|YP_514187.1| - 5.6e-103 344.4 0.9 6.2e-103 344.3 0.6 1.0 1 0 0 1 1 1 1 MraW methylase family Methyltransf_31 PF13847.1 gi|89256825|ref|YP_514187.1| - 9.2e-07 28.5 1.4 4.1e-05 23.2 1.0 2.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|89256825|ref|YP_514187.1| - 0.0029 18.1 0.0 0.038 14.5 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|89256825|ref|YP_514187.1| - 0.0056 17.1 0.0 0.9 10.0 0.0 2.5 2 0 0 2 2 2 1 Methyltransferase domain Chrome_Resist PF09828.4 gi|89256825|ref|YP_514187.1| - 0.012 15.8 0.1 0.2 11.8 0.0 2.1 2 0 0 2 2 2 0 Chromate resistance exported protein Methyltransf_26 PF13659.1 gi|89256825|ref|YP_514187.1| - 0.031 14.2 0.0 0.092 12.7 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase domain Ubie_methyltran PF01209.13 gi|89256825|ref|YP_514187.1| - 0.077 12.0 0.0 0.16 11.0 0.0 1.7 1 1 0 1 1 1 0 ubiE/COQ5 methyltransferase family AMP-binding PF00501.23 gi|89256826|ref|YP_514188.1| - 4.1e-68 229.6 0.0 5.6e-68 229.2 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme Fapy_DNA_glyco PF01149.19 gi|89256827|ref|YP_514189.1| - 1.4e-28 99.5 0.0 2.5e-28 98.7 0.0 1.4 1 0 0 1 1 1 1 Formamidopyrimidine-DNA glycosylase N-terminal domain H2TH PF06831.9 gi|89256827|ref|YP_514189.1| - 3.4e-24 84.4 0.1 7.4e-24 83.3 0.0 1.6 1 0 0 1 1 1 1 Formamidopyrimidine-DNA glycosylase H2TH domain zf-FPG_IleRS PF06827.9 gi|89256827|ref|YP_514189.1| - 4.6e-06 26.1 1.6 1e-05 25.0 1.1 1.5 1 0 0 1 1 1 1 Zinc finger found in FPG and IleRS FbpA PF05833.6 gi|89256827|ref|YP_514189.1| - 0.008 14.7 0.0 0.012 14.2 0.0 1.2 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) DUF4428 PF14471.1 gi|89256827|ref|YP_514189.1| - 0.15 11.7 2.6 0.42 10.3 1.8 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF4428) Arch_ATPase PF01637.13 gi|89256827|ref|YP_514189.1| - 0.28 10.8 5.9 0.19 11.4 2.0 1.9 1 1 1 2 2 2 0 Archaeal ATPase DDE_3 PF13358.1 gi|89256828|ref|YP_514190.1| - 5.3e-31 107.3 0.0 9e-31 106.5 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.11 gi|89256828|ref|YP_514190.1| - 1.6e-07 31.0 0.2 1.1e-06 28.3 0.1 2.1 2 0 0 2 2 2 1 Transposase DDE_1 PF03184.14 gi|89256828|ref|YP_514190.1| - 6e-07 28.8 0.1 9.5e-07 28.1 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_28 PF13518.1 gi|89256828|ref|YP_514190.1| - 0.00058 19.8 0.0 0.0018 18.2 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain rve PF00665.21 gi|89256828|ref|YP_514190.1| - 0.00072 19.6 0.0 0.0013 18.7 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.1 gi|89256828|ref|YP_514190.1| - 0.0087 15.6 0.0 0.029 14.0 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.1 gi|89256828|ref|YP_514190.1| - 0.02 15.0 0.0 0.032 14.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix DDE_Tnp_ISAZ013 PF07592.6 gi|89256828|ref|YP_514190.1| - 0.041 12.6 0.7 0.32 9.7 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain CENP-B_N PF04218.8 gi|89256828|ref|YP_514190.1| - 0.069 12.5 0.0 0.7 9.3 0.0 2.5 3 0 0 3 3 3 0 CENP-B N-terminal DNA-binding domain SNO PF01174.14 gi|89256829|ref|YP_514191.1| - 8.2e-49 165.7 0.0 9.3e-49 165.6 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.9 gi|89256829|ref|YP_514191.1| - 4.4e-05 23.1 0.0 0.00017 21.2 0.0 1.9 2 0 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_S51 PF03575.12 gi|89256829|ref|YP_514191.1| - 5.6e-05 22.9 0.0 8.8e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 Peptidase family S51 GATase PF00117.23 gi|89256829|ref|YP_514191.1| - 0.0019 17.7 0.1 0.038 13.4 0.0 2.1 1 1 0 2 2 2 1 Glutamine amidotransferase class-I SOR_SNZ PF01680.12 gi|89256830|ref|YP_514192.1| - 1.1e-107 358.2 3.4 1.6e-107 357.8 2.3 1.2 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.9 gi|89256830|ref|YP_514192.1| - 2.6e-08 33.2 4.7 4e-06 26.0 0.1 2.5 2 1 0 2 2 2 2 Thiazole biosynthesis protein ThiG His_biosynth PF00977.16 gi|89256830|ref|YP_514192.1| - 0.0012 18.1 0.3 0.024 13.8 0.0 2.2 2 0 0 2 2 2 1 Histidine biosynthesis protein NanE PF04131.9 gi|89256830|ref|YP_514192.1| - 0.003 16.5 0.7 0.24 10.3 0.0 2.7 2 2 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase NMO PF03060.10 gi|89256830|ref|YP_514192.1| - 0.036 13.2 3.0 0.14 11.3 0.0 2.3 2 0 0 2 2 2 0 Nitronate monooxygenase IGPS PF00218.16 gi|89256830|ref|YP_514192.1| - 0.039 12.9 0.1 0.23 10.4 0.0 2.1 2 0 0 2 2 2 0 Indole-3-glycerol phosphate synthase DNA_gyraseB PF00204.20 gi|89256831|ref|YP_514193.1| - 5.4e-62 208.0 0.6 1.3e-61 206.8 0.4 1.7 1 0 0 1 1 1 1 DNA gyrase B DNA_gyraseB_C PF00986.16 gi|89256831|ref|YP_514193.1| - 3.7e-30 103.4 0.0 1e-29 102.0 0.0 1.8 1 0 0 1 1 1 1 DNA gyrase B subunit, carboxyl terminus Toprim PF01751.17 gi|89256831|ref|YP_514193.1| - 6.3e-26 90.2 0.0 1.5e-25 89.0 0.0 1.7 1 0 0 1 1 1 1 Toprim domain HATPase_c PF02518.21 gi|89256831|ref|YP_514193.1| - 8.2e-19 67.3 0.1 1.7e-18 66.3 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|89256831|ref|YP_514193.1| - 0.00012 21.6 0.2 0.00029 20.4 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Toprim_4 PF13662.1 gi|89256831|ref|YP_514193.1| - 0.043 13.8 0.0 0.31 11.0 0.0 2.5 2 1 0 2 2 2 0 Toprim domain Ima1_N PF09779.4 gi|89256832|ref|YP_514194.1| - 0.075 13.5 0.1 0.15 12.5 0.1 1.6 1 0 0 1 1 1 0 Ima1 N-terminal domain DUF3139 PF11337.3 gi|89256832|ref|YP_514194.1| - 0.2 11.9 0.3 0.2 11.9 0.2 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF3139) Dus PF01207.12 gi|89256833|ref|YP_514195.1| - 1.2e-78 264.0 0.0 1.5e-78 263.8 0.0 1.0 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) His_biosynth PF00977.16 gi|89256833|ref|YP_514195.1| - 0.00027 20.3 0.0 0.0007 18.9 0.0 1.6 1 1 0 1 1 1 1 Histidine biosynthesis protein ETC_C1_NDUFA5 PF04716.9 gi|89256833|ref|YP_514195.1| - 0.08 12.4 0.0 0.18 11.3 0.0 1.6 1 0 0 1 1 1 0 ETC complex I subunit conserved region Thioredoxin_4 PF13462.1 gi|89256834|ref|YP_514196.1| - 2.7e-14 53.4 0.5 5.5e-14 52.5 0.0 1.7 2 0 0 2 2 2 1 Thioredoxin Thioredoxin_8 PF13905.1 gi|89256834|ref|YP_514196.1| - 0.0033 17.4 0.9 0.3 11.2 0.0 2.6 2 0 0 2 2 2 1 Thioredoxin-like Thioredoxin_2 PF13098.1 gi|89256834|ref|YP_514196.1| - 0.0075 16.4 1.7 0.015 15.5 0.4 2.2 1 1 1 2 2 2 1 Thioredoxin-like domain DSBA PF01323.15 gi|89256834|ref|YP_514196.1| - 0.011 15.3 4.4 0.06 12.8 1.2 2.4 2 1 0 2 2 2 0 DSBA-like thioredoxin domain Thioredoxin PF00085.15 gi|89256834|ref|YP_514196.1| - 0.069 12.8 0.1 0.2 11.3 0.0 1.8 1 0 0 1 1 1 0 Thioredoxin LPAM_1 PF08139.7 gi|89256834|ref|YP_514196.1| - 0.12 12.5 1.1 0.27 11.5 0.8 1.6 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site OLF PF02191.11 gi|89256835|ref|YP_514197.1| - 0.041 13.1 0.4 0.045 13.0 0.3 1.1 1 0 0 1 1 1 0 Olfactomedin-like domain VP4_2 PF08935.5 gi|89256835|ref|YP_514197.1| - 2.3 8.8 5.6 1.9 9.1 0.3 2.1 1 1 1 2 2 2 0 Viral protein VP4 subunit DUF1993 PF09351.5 gi|89256836|ref|YP_514198.1| - 0.014 15.2 1.4 0.036 13.9 1.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF1993) Ubiquitin_2 PF14560.1 gi|89256836|ref|YP_514198.1| - 0.76 10.0 10.3 23 5.3 0.6 3.9 4 0 0 4 4 4 0 Ubiquitin-like domain ATP-grasp_2 PF08442.5 gi|89256837|ref|YP_514199.1| - 1.8e-79 265.8 0.3 1.8e-79 265.8 0.2 1.5 2 0 0 2 2 2 1 ATP-grasp domain Ligase_CoA PF00549.14 gi|89256837|ref|YP_514199.1| - 1e-26 93.3 2.0 1e-26 93.3 1.4 1.7 2 0 0 2 2 2 1 CoA-ligase ATP-grasp_5 PF13549.1 gi|89256837|ref|YP_514199.1| - 1.1e-11 44.4 1.1 2e-10 40.2 0.7 2.4 1 1 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.14 gi|89256837|ref|YP_514199.1| - 1e-05 25.1 1.2 1.9e-05 24.3 0.1 1.9 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_4 PF13535.1 gi|89256837|ref|YP_514199.1| - 0.014 15.1 0.2 0.051 13.3 0.0 1.9 2 0 0 2 2 2 0 ATP-grasp domain NTS PF15447.1 gi|89256837|ref|YP_514199.1| - 0.035 14.4 2.2 0.049 14.0 0.2 2.4 3 0 0 3 3 3 0 N-terminal segments of PfEMP1 SDH_alpha PF03313.10 gi|89256837|ref|YP_514199.1| - 0.054 12.5 0.1 0.1 11.6 0.0 1.4 1 0 0 1 1 1 0 Serine dehydratase alpha chain ATP-grasp PF02222.17 gi|89256837|ref|YP_514199.1| - 0.06 12.7 0.1 0.21 10.9 0.0 1.9 2 0 0 2 2 2 0 ATP-grasp domain CoA_binding PF02629.14 gi|89256838|ref|YP_514200.1| - 6.1e-28 97.1 6.4 7.9e-28 96.8 1.2 2.4 2 1 0 2 2 2 1 CoA binding domain Ligase_CoA PF00549.14 gi|89256838|ref|YP_514200.1| - 4.2e-20 71.8 0.5 4.2e-20 71.8 0.4 1.6 2 0 0 2 2 2 1 CoA-ligase Succ_CoA_lig PF13607.1 gi|89256838|ref|YP_514200.1| - 1.5e-07 31.1 0.0 2.8e-07 30.2 0.0 1.4 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|89256838|ref|YP_514200.1| - 6.1e-06 26.3 0.0 1.5e-05 25.1 0.0 1.7 1 0 0 1 1 1 1 CoA binding domain UPF0118 PF01594.11 gi|89256840|ref|YP_514202.1| - 6.9e-40 137.0 46.1 8.7e-40 136.6 32.0 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF20 DHC_N1 PF08385.7 gi|89256840|ref|YP_514202.1| - 0.046 12.1 0.2 0.067 11.5 0.1 1.2 1 0 0 1 1 1 0 Dynein heavy chain, N-terminal region 1 ATP-grasp_4 PF13535.1 gi|89256841|ref|YP_514203.1| - 1.6e-19 70.3 0.0 3e-19 69.4 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|89256841|ref|YP_514203.1| - 8.9e-06 24.6 0.0 1.2e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.9 gi|89256841|ref|YP_514203.1| - 0.0053 16.6 0.0 0.0089 15.9 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain Methyltrans_RNA PF04452.9 gi|89256841|ref|YP_514203.1| - 0.11 11.5 0.0 0.16 11.0 0.0 1.2 1 0 0 1 1 1 0 RNA methyltransferase ATP-grasp_4 PF13535.1 gi|89256842|ref|YP_514204.1| - 4e-08 33.2 0.0 5.8e-08 32.6 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|89256842|ref|YP_514204.1| - 0.085 12.2 0.0 0.13 11.6 0.0 1.4 1 0 0 1 1 1 0 D-ala D-ala ligase C-terminus CutC PF03932.9 gi|89256843|ref|YP_514205.1| - 5.2e-61 205.4 0.3 6.6e-61 205.1 0.2 1.1 1 0 0 1 1 1 1 CutC family Aldolase PF01081.14 gi|89256843|ref|YP_514205.1| - 5.7e-06 25.6 0.0 1.1e-05 24.7 0.0 1.5 1 0 0 1 1 1 1 KDPG and KHG aldolase KH_3 PF13014.1 gi|89256843|ref|YP_514205.1| - 0.004 16.7 0.6 0.048 13.3 0.2 2.5 1 1 1 2 2 2 1 KH domain MFS_1 PF07690.11 gi|89256844|ref|YP_514206.1| - 3.7e-35 121.2 49.3 3.7e-35 121.2 34.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|89256844|ref|YP_514206.1| - 3.1e-10 39.2 16.8 3.1e-10 39.2 11.6 3.1 1 1 2 3 3 3 2 Sugar (and other) transporter MFS_2 PF13347.1 gi|89256844|ref|YP_514206.1| - 3.9e-05 22.2 47.1 0.0011 17.4 7.8 2.9 1 1 1 2 2 2 2 MFS/sugar transport protein DUF3989 PF13150.1 gi|89256844|ref|YP_514206.1| - 0.23 10.9 0.1 0.23 10.9 0.1 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF3989) DUF1228 PF06779.9 gi|89256844|ref|YP_514206.1| - 1.4 8.9 35.7 0.042 13.8 1.6 4.7 3 2 2 5 5 5 0 Protein of unknown function (DUF1228) LysR_substrate PF03466.15 gi|89256845|ref|YP_514207.1| - 1.4e-24 86.3 0.0 1.6e-24 86.1 0.0 1.1 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.22 gi|89256845|ref|YP_514207.1| - 2.6e-15 55.8 0.0 4.5e-15 55.1 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family AATF-Che1 PF13339.1 gi|89256845|ref|YP_514207.1| - 0.095 12.8 0.3 0.24 11.5 0.2 1.7 1 0 0 1 1 1 0 Apoptosis antagonizing transcription factor HAD_2 PF13419.1 gi|89256846|ref|YP_514208.1| - 1.9e-25 90.0 0.0 2.4e-25 89.7 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|89256846|ref|YP_514208.1| - 2.3e-16 60.8 0.5 1.1e-15 58.6 0.4 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|89256846|ref|YP_514208.1| - 3.2e-11 42.7 0.0 6.5e-11 41.7 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.2 gi|89256846|ref|YP_514208.1| - 1.9e-08 34.7 0.1 4.2e-08 33.5 0.1 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|89256846|ref|YP_514208.1| - 1.9e-06 27.6 0.9 0.51 9.8 0.0 3.2 3 0 0 3 3 3 2 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|89256846|ref|YP_514208.1| - 0.00015 21.6 0.3 0.0016 18.3 0.2 2.5 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase DUF3895 PF13034.1 gi|89256846|ref|YP_514208.1| - 0.0022 17.4 0.1 0.0044 16.4 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF3895) Acid_phosphat_B PF03767.9 gi|89256846|ref|YP_514208.1| - 0.0093 15.3 0.9 0.064 12.6 0.0 2.2 2 0 0 2 2 2 1 HAD superfamily, subfamily IIIB (Acid phosphatase) Gag_p19 PF02228.11 gi|89256846|ref|YP_514208.1| - 0.027 14.7 0.0 0.098 12.9 0.0 1.9 1 1 1 2 2 2 0 Major core protein p19 DUF705 PF05152.7 gi|89256846|ref|YP_514208.1| - 0.039 12.9 0.3 0.14 11.0 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF705) Acid_PPase PF12689.2 gi|89256846|ref|YP_514208.1| - 0.043 13.4 0.0 2.4 7.7 0.0 2.3 2 0 0 2 2 2 0 Acid Phosphatase S6PP PF05116.8 gi|89256846|ref|YP_514208.1| - 0.1 11.8 0.1 0.56 9.4 0.0 2.1 3 0 0 3 3 3 0 Sucrose-6F-phosphate phosphohydrolase PLDc_2 PF13091.1 gi|89256847|ref|YP_514209.1| - 2e-35 121.2 9.8 1.8e-20 72.9 1.7 2.2 2 0 0 2 2 2 2 PLD-like domain PLDc PF00614.17 gi|89256847|ref|YP_514209.1| - 0.0016 18.1 5.8 0.12 12.2 0.3 3.3 3 0 0 3 3 3 2 Phospholipase D Active site motif Regulator_TrmB PF11495.3 gi|89256847|ref|YP_514209.1| - 0.0026 16.7 2.5 0.11 11.4 0.5 3.2 2 1 0 2 2 2 1 Archaeal transcriptional regulator TrmB DUF1669 PF07894.7 gi|89256847|ref|YP_514209.1| - 0.05 12.7 1.4 0.26 10.4 0.7 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF1669) Pyr_redox_2 PF07992.9 gi|89256848|ref|YP_514210.1| - 4.9e-35 121.2 2.8 7.6e-29 101.0 0.4 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|89256848|ref|YP_514210.1| - 7.8e-19 67.8 1.0 6.5e-17 61.7 0.5 2.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|89256848|ref|YP_514210.1| - 2.9e-18 66.6 0.1 2.5e-14 53.8 0.0 3.0 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|89256848|ref|YP_514210.1| - 2.6e-06 26.5 7.6 0.0004 19.3 0.1 3.5 2 1 2 4 4 4 2 FAD binding domain GIDA PF01134.17 gi|89256848|ref|YP_514210.1| - 1.1e-05 24.4 9.0 0.019 13.8 0.0 4.7 3 1 2 5 5 5 2 Glucose inhibited division protein A DAO PF01266.19 gi|89256848|ref|YP_514210.1| - 3e-05 23.0 1.8 0.74 8.6 0.0 3.9 3 1 1 4 4 4 2 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|89256848|ref|YP_514210.1| - 4.1e-05 22.8 0.5 0.00043 19.4 0.0 2.5 2 1 1 3 3 3 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|89256848|ref|YP_514210.1| - 0.00012 20.6 3.5 0.061 11.7 0.1 3.8 3 1 1 4 4 4 1 HI0933-like protein Thi4 PF01946.12 gi|89256848|ref|YP_514210.1| - 0.00047 19.3 3.2 0.023 13.8 0.0 3.2 2 1 1 3 3 3 1 Thi4 family K_oxygenase PF13434.1 gi|89256848|ref|YP_514210.1| - 0.00063 18.7 0.0 0.038 12.8 0.0 2.4 1 1 1 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_7 PF13241.1 gi|89256848|ref|YP_514210.1| - 0.0025 18.0 0.1 0.037 14.2 0.0 2.3 2 1 0 2 2 2 1 Putative NAD(P)-binding NAD_binding_8 PF13450.1 gi|89256848|ref|YP_514210.1| - 0.003 17.5 0.0 0.025 14.6 0.0 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.14 gi|89256848|ref|YP_514210.1| - 0.016 14.2 0.6 2.3 7.1 0.0 2.9 2 1 1 3 3 3 0 FAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|89256848|ref|YP_514210.1| - 0.037 13.7 0.2 7.6 6.2 0.0 2.8 3 0 0 3 3 3 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DUF2246 PF10229.4 gi|89256848|ref|YP_514210.1| - 0.072 12.3 0.0 0.12 11.6 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2246) DDE_Tnp_1_2 PF13586.1 gi|89256849|ref|YP_514211.1| - 2.4e-15 56.4 0.2 6.9e-15 55.0 0.1 1.8 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|89256849|ref|YP_514211.1| - 1e-12 48.0 1.3 5.8e-12 45.5 0.9 1.9 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|89256849|ref|YP_514211.1| - 1.2e-09 38.1 0.1 1.6e-09 37.6 0.1 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF4096 PF13340.1 gi|89256849|ref|YP_514211.1| - 0.00063 19.5 0.0 0.0012 18.6 0.0 1.5 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) MFS_1 PF07690.11 gi|89256850|ref|YP_514212.1| - 3e-11 42.6 19.5 3.6e-11 42.3 13.5 1.0 1 0 0 1 1 1 1 Major Facilitator Superfamily Prd1-P2 PF09214.6 gi|89256850|ref|YP_514212.1| - 0.079 11.5 1.6 0.11 11.0 1.1 1.1 1 0 0 1 1 1 0 Bacteriophage Prd1, adsorption protein P2 MFS_1 PF07690.11 gi|89256851|ref|YP_514213.1| - 0.00016 20.5 9.2 0.00019 20.2 6.4 1.1 1 0 0 1 1 1 1 Major Facilitator Superfamily ThiI PF02568.9 gi|89256851|ref|YP_514213.1| - 0.049 13.0 0.1 0.062 12.7 0.1 1.2 1 0 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) Na_Pi_cotrans PF02690.10 gi|89256851|ref|YP_514213.1| - 0.46 10.1 7.8 0.11 12.1 3.1 1.6 1 1 1 2 2 2 0 Na+/Pi-cotransporter FtsX PF02687.16 gi|89256851|ref|YP_514213.1| - 5.7 6.7 22.4 5.7e+02 0.2 15.5 2.1 1 1 0 1 1 1 0 FtsX-like permease family MFS_1 PF07690.11 gi|89256852|ref|YP_514214.1| - 1.9e-09 36.7 13.0 1.9e-09 36.7 9.0 2.2 1 1 0 2 2 2 1 Major Facilitator Superfamily MFS_3 PF05977.8 gi|89256852|ref|YP_514214.1| - 7.7e-06 24.3 0.8 1.5e-05 23.3 0.5 1.4 1 0 0 1 1 1 1 Transmembrane secretion effector DUF92 PF01940.11 gi|89256852|ref|YP_514214.1| - 2.1 7.4 10.1 0.12 11.5 0.5 2.6 2 1 0 2 2 2 0 Integral membrane protein DUF92 MutL_C PF08676.6 gi|89256853|ref|YP_514215.1| - 2.7e-43 147.0 0.1 5.4e-43 146.0 0.1 1.5 1 0 0 1 1 1 1 MutL C terminal dimerisation domain DNA_mis_repair PF01119.14 gi|89256853|ref|YP_514215.1| - 1.3e-37 127.8 0.2 4.1e-37 126.2 0.0 1.9 2 0 0 2 2 2 1 DNA mismatch repair protein, C-terminal domain HATPase_c_3 PF13589.1 gi|89256853|ref|YP_514215.1| - 3.2e-15 56.0 0.1 3.2e-15 56.0 0.1 2.1 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.21 gi|89256853|ref|YP_514215.1| - 9.1e-14 51.1 0.3 1.7e-10 40.6 0.1 2.9 2 1 0 2 2 2 2 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF2147 PF09917.4 gi|89256854|ref|YP_514216.1| - 3.4e-14 53.0 0.5 3.4e-14 53.0 0.3 1.6 2 0 0 2 2 2 1 Uncharacterized protein conserved in bacteria (DUF2147) DUF2255 PF10012.4 gi|89256854|ref|YP_514216.1| - 0.024 14.5 0.1 0.03 14.2 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2255) DUF4124 PF13511.1 gi|89256854|ref|YP_514216.1| - 0.085 12.9 0.0 0.23 11.5 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4124) DUF2147 PF09917.4 gi|89256855|ref|YP_514217.1| - 2.9e-08 33.9 0.1 3.9e-08 33.5 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2147) DUF2147 PF09917.4 gi|89256856|ref|YP_514218.1| - 6.1e-07 29.6 0.3 1.5e-06 28.4 0.3 1.8 1 1 1 2 2 2 1 Uncharacterized protein conserved in bacteria (DUF2147) GXGXG PF01493.14 gi|89256856|ref|YP_514218.1| - 0.044 12.7 0.0 0.079 11.9 0.0 1.4 1 0 0 1 1 1 0 GXGXG motif DUF258 PF03193.11 gi|89256857|ref|YP_514219.1| - 6.7e-47 158.6 0.3 9.6e-47 158.1 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 GTP_EFTU PF00009.22 gi|89256857|ref|YP_514219.1| - 1.2e-08 34.5 2.5 2.1e-06 27.3 0.0 2.3 1 1 1 2 2 2 2 Elongation factor Tu GTP binding domain MMR_HSR1 PF01926.18 gi|89256857|ref|YP_514219.1| - 2.1e-08 34.1 0.6 1.1e-06 28.6 0.0 2.2 2 0 0 2 2 2 1 50S ribosome-binding GTPase AIG1 PF04548.11 gi|89256857|ref|YP_514219.1| - 2.4e-06 26.7 1.0 6e-06 25.5 0.3 1.9 2 0 0 2 2 2 1 AIG1 family FeoB_N PF02421.13 gi|89256857|ref|YP_514219.1| - 5.7e-05 22.4 0.5 0.25 10.6 0.0 2.3 2 0 0 2 2 2 2 Ferrous iron transport protein B PduV-EutP PF10662.4 gi|89256857|ref|YP_514219.1| - 0.00044 19.7 6.1 0.0011 18.4 0.3 2.7 1 1 1 2 2 2 1 Ethanolamine utilisation - propanediol utilisation ABC_tran PF00005.22 gi|89256857|ref|YP_514219.1| - 0.0098 16.1 1.3 0.061 13.6 0.3 2.1 2 0 0 2 2 2 1 ABC transporter AAA_22 PF13401.1 gi|89256857|ref|YP_514219.1| - 0.022 14.8 0.8 1.2 9.2 0.1 2.2 2 0 0 2 2 2 0 AAA domain Septin PF00735.13 gi|89256857|ref|YP_514219.1| - 0.029 13.3 0.2 0.029 13.3 0.1 1.6 2 0 0 2 2 2 0 Septin Miro PF08477.8 gi|89256857|ref|YP_514219.1| - 0.031 14.7 0.4 0.84 10.1 0.0 2.2 2 0 0 2 2 2 0 Miro-like protein DUF3281 PF11685.3 gi|89256858|ref|YP_514220.1| - 3.7e-137 455.8 10.2 4.2e-137 455.6 7.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3281) SBP_bac_8 PF13416.1 gi|89256859|ref|YP_514221.1| - 1.4e-23 84.0 4.3 2e-23 83.5 3.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|89256859|ref|YP_514221.1| - 1.1e-21 77.3 2.7 1.5e-21 76.8 1.9 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|89256859|ref|YP_514221.1| - 3.1e-11 43.5 5.4 3.1e-11 43.5 3.7 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein Peptidase_M2 PF01401.13 gi|89256859|ref|YP_514221.1| - 0.00054 18.3 0.0 0.00085 17.6 0.0 1.2 1 0 0 1 1 1 1 Angiotensin-converting enzyme AA_permease_2 PF13520.1 gi|89256860|ref|YP_514222.1| - 2.3e-53 181.2 66.8 2.9e-53 180.9 46.3 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|89256860|ref|YP_514222.1| - 1.4e-19 69.8 59.5 1.7e-19 69.5 41.2 1.0 1 0 0 1 1 1 1 Amino acid permease UPF0118 PF01594.11 gi|89256861|ref|YP_514223.1| - 1.7e-58 198.1 48.9 2.1e-58 197.8 33.9 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF20 DHH PF01368.15 gi|89256862|ref|YP_514224.1| - 9.7e-12 44.7 0.0 2.3e-11 43.5 0.0 1.7 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|89256862|ref|YP_514224.1| - 1e-09 37.9 0.0 3.1e-09 36.4 0.0 1.9 1 0 0 1 1 1 1 DHHA1 domain PhoU PF01895.14 gi|89256862|ref|YP_514224.1| - 2 8.9 7.0 21 5.6 0.4 4.2 4 0 0 4 4 4 0 PhoU domain BPL_LplA_LipB PF03099.14 gi|89256863|ref|YP_514225.1| - 4.9e-15 55.6 0.0 7.7e-15 55.0 0.0 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family BPL_C PF02237.12 gi|89256863|ref|YP_514225.1| - 0.0047 16.5 0.0 0.015 14.9 0.0 1.9 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain tRNA-synt_2 PF00152.15 gi|89256864|ref|YP_514226.1| - 3.4e-55 187.1 0.5 4.3e-55 186.8 0.4 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA-synt_2b PF00587.20 gi|89256864|ref|YP_514226.1| - 0.0042 16.6 0.1 0.15 11.6 0.0 2.3 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_2d PF01409.15 gi|89256864|ref|YP_514226.1| - 0.028 13.6 0.0 5.5 6.0 0.0 2.3 2 0 0 2 2 2 0 tRNA synthetases class II core domain (F) Bromodomain PF00439.20 gi|89256864|ref|YP_514226.1| - 0.27 11.1 2.3 1 9.3 0.2 2.9 3 1 1 4 4 4 0 Bromodomain MS_channel PF00924.13 gi|89256865|ref|YP_514227.1| - 2.8e-32 111.7 5.8 3.5e-32 111.4 4.0 1.1 1 0 0 1 1 1 1 Mechanosensitive ion channel DUF417 PF04224.7 gi|89256865|ref|YP_514227.1| - 0.02 14.2 0.0 0.033 13.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF417 DDE_Tnp_1_2 PF13586.1 gi|89256866|ref|YP_514228.1| - 6.6e-16 58.2 0.2 1.8e-15 56.8 0.1 1.8 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|89256866|ref|YP_514228.1| - 3.9e-13 49.4 1.0 1.3e-12 47.7 0.7 1.7 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|89256866|ref|YP_514228.1| - 2.9e-09 36.8 1.6 4.4e-09 36.2 0.1 1.8 2 0 0 2 2 2 1 Transposase DDE domain DUF4096 PF13340.1 gi|89256866|ref|YP_514228.1| - 0.00074 19.3 0.0 0.0014 18.3 0.0 1.5 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) HTH_25 PF13413.1 gi|89256867|ref|YP_514229.1| - 4.6e-10 38.9 0.3 7.3e-10 38.3 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|89256867|ref|YP_514229.1| - 0.038 14.1 0.0 0.084 13.0 0.0 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_3 PF01381.17 gi|89256867|ref|YP_514229.1| - 0.075 12.8 0.1 0.18 11.7 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix HTH_19 PF12844.2 gi|89256867|ref|YP_514229.1| - 0.11 12.5 2.1 0.12 12.4 0.5 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain Mucin PF01456.12 gi|89256867|ref|YP_514229.1| - 0.69 9.6 14.8 0.99 9.1 10.3 1.3 1 0 0 1 1 1 0 Mucin-like glycoprotein CPSase_L_D2 PF02786.12 gi|89256868|ref|YP_514230.1| - 7.1e-79 263.9 0.0 1.1e-78 263.4 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|89256868|ref|YP_514230.1| - 2.7e-43 146.5 0.2 2.7e-43 146.5 0.1 1.8 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, N-terminal domain Biotin_carb_C PF02785.14 gi|89256868|ref|YP_514230.1| - 6.2e-41 138.7 0.0 1.8e-40 137.2 0.0 1.8 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain ATP-grasp_4 PF13535.1 gi|89256868|ref|YP_514230.1| - 6.5e-14 52.0 0.0 1.4e-13 51.0 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|89256868|ref|YP_514230.1| - 5.5e-12 45.4 0.0 1.3e-11 44.2 0.0 1.6 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus ATPgrasp_Ter PF15632.1 gi|89256868|ref|YP_514230.1| - 5.3e-11 41.8 0.0 2.1e-08 33.3 0.0 2.1 2 0 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.9 gi|89256868|ref|YP_514230.1| - 1.4e-08 34.7 0.1 2.5e-08 33.9 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp PF02222.17 gi|89256868|ref|YP_514230.1| - 9.9e-08 31.5 0.1 2.5e-07 30.2 0.1 1.6 1 0 0 1 1 1 1 ATP-grasp domain RimK PF08443.6 gi|89256868|ref|YP_514230.1| - 3e-05 23.5 0.0 5.9e-05 22.6 0.0 1.6 1 1 0 1 1 1 1 RimK-like ATP-grasp domain Biotin_lipoyl PF00364.17 gi|89256869|ref|YP_514231.1| - 2.8e-24 84.5 1.0 2.8e-24 84.5 0.7 1.7 2 0 0 2 2 2 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.1 gi|89256869|ref|YP_514231.1| - 1.7e-09 37.1 0.6 3.5e-06 26.5 0.0 3.0 2 1 1 3 3 3 2 Biotin-lipoyl like GCV_H PF01597.14 gi|89256869|ref|YP_514231.1| - 0.00017 21.2 3.4 0.0075 15.9 0.2 2.2 2 0 0 2 2 2 2 Glycine cleavage H-protein Phosphoprotein PF00922.12 gi|89256869|ref|YP_514231.1| - 0.0011 18.2 1.2 0.0023 17.2 0.6 1.6 1 1 1 2 2 2 1 Vesiculovirus phosphoprotein HlyD PF00529.15 gi|89256869|ref|YP_514231.1| - 0.0011 18.3 0.8 0.22 10.8 0.0 2.9 3 0 0 3 3 3 1 HlyD family secretion protein RnfC_N PF13375.1 gi|89256869|ref|YP_514231.1| - 0.011 15.4 1.3 0.013 15.2 0.1 1.8 1 1 1 2 2 2 0 RnfC Barrel sandwich hybrid domain QRPTase_N PF02749.11 gi|89256869|ref|YP_514231.1| - 0.019 14.7 0.1 0.19 11.5 0.0 2.6 1 1 1 2 2 2 0 Quinolinate phosphoribosyl transferase, N-terminal domain HlyD_2 PF12700.2 gi|89256869|ref|YP_514231.1| - 0.039 13.1 0.2 0.096 11.8 0.2 1.6 1 1 1 2 2 2 0 HlyD family secretion protein DUF1020 PF06255.8 gi|89256869|ref|YP_514231.1| - 0.07 12.3 1.3 0.087 12.0 0.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1020) TPPII_N PF12583.3 gi|89256869|ref|YP_514231.1| - 3.1 7.9 7.7 5.9 7.0 3.7 2.0 2 0 0 2 2 2 0 Tripeptidyl peptidase II N terminal DHquinase_II PF01220.14 gi|89256870|ref|YP_514232.1| - 6.2e-58 194.0 0.2 7e-58 193.9 0.1 1.0 1 0 0 1 1 1 1 Dehydroquinase class II Metallophos PF00149.23 gi|89256871|ref|YP_514233.1| - 3.6e-15 55.8 0.6 5.1e-15 55.4 0.4 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase RrnaAD PF00398.15 gi|89256872|ref|YP_514234.1| - 9.3e-64 214.9 0.8 1e-63 214.8 0.6 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_23 PF13489.1 gi|89256872|ref|YP_514234.1| - 0.00095 18.9 0.0 0.0013 18.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|89256872|ref|YP_514234.1| - 0.05 13.1 0.1 0.078 12.5 0.1 1.5 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_PK PF05891.7 gi|89256872|ref|YP_514234.1| - 0.063 12.5 0.0 0.1 11.9 0.0 1.3 1 0 0 1 1 1 0 AdoMet dependent proline di-methyltransferase RICTOR_V PF14668.1 gi|89256872|ref|YP_514234.1| - 0.13 12.2 0.1 3.1 7.7 0.0 2.9 4 0 0 4 4 4 0 Rapamycin-insensitive companion of mTOR, domain 5 MTS PF05175.9 gi|89256872|ref|YP_514234.1| - 0.13 11.6 0.0 0.2 10.9 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase small domain MSV199 PF10553.4 gi|89256872|ref|YP_514234.1| - 1.3 8.9 6.2 4.5 7.1 0.1 3.3 4 0 0 4 4 4 0 MSV199 domain SurA_N PF09312.6 gi|89256873|ref|YP_514235.1| - 1.7e-20 72.9 4.2 1.7e-20 72.9 2.9 2.2 2 0 0 2 2 2 1 SurA N-terminal domain Rotamase PF00639.16 gi|89256873|ref|YP_514235.1| - 3.4e-13 50.1 4.4 8.8e-07 29.5 0.0 3.6 4 0 0 4 4 4 2 PPIC-type PPIASE domain SurA_N_3 PF13624.1 gi|89256873|ref|YP_514235.1| - 9e-12 45.2 3.5 3.1e-11 43.4 2.4 1.9 1 0 0 1 1 1 1 SurA N-terminal domain Rotamase_3 PF13616.1 gi|89256873|ref|YP_514235.1| - 3.9e-10 40.0 0.8 0.0003 21.0 0.0 2.7 1 1 1 2 2 2 2 PPIC-type PPIASE domain Rotamase_2 PF13145.1 gi|89256873|ref|YP_514235.1| - 1e-09 39.0 11.1 2.3e-05 25.0 0.2 3.5 3 1 0 3 3 3 2 PPIC-type PPIASE domain SurA_N_2 PF13623.1 gi|89256873|ref|YP_514235.1| - 0.016 15.1 0.5 0.016 15.1 0.4 2.6 2 1 1 3 3 3 0 SurA N-terminal domain Trigger_C PF05698.9 gi|89256873|ref|YP_514235.1| - 0.036 13.9 0.4 0.036 13.9 0.3 3.5 2 1 1 3 3 3 0 Bacterial trigger factor protein (TF) C-terminus OstA_C PF04453.9 gi|89256874|ref|YP_514236.1| - 1.2e-81 274.7 33.3 1.2e-81 274.7 23.1 1.7 1 1 1 2 2 2 2 Organic solvent tolerance protein OstA PF03968.9 gi|89256874|ref|YP_514236.1| - 2e-07 30.9 3.4 2.8e-06 27.2 0.3 3.0 2 1 0 2 2 2 1 OstA-like protein tRNA-synt_1d PF00750.14 gi|89256875|ref|YP_514237.1| - 2.2e-72 243.8 1.4 4.8e-72 242.7 0.1 1.9 2 0 0 2 2 2 1 tRNA synthetases class I (R) DALR_1 PF05746.10 gi|89256875|ref|YP_514237.1| - 2.5e-27 95.2 0.3 7.1e-27 93.7 0.2 1.8 1 0 0 1 1 1 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.11 gi|89256875|ref|YP_514237.1| - 6e-23 81.1 1.3 2.8e-22 79.0 0.2 2.5 2 0 0 2 2 2 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1g PF09334.6 gi|89256875|ref|YP_514237.1| - 0.0015 17.2 0.2 0.13 10.9 0.0 2.5 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|89256875|ref|YP_514237.1| - 0.012 14.7 1.2 0.13 11.3 0.0 3.1 2 1 0 2 2 2 0 tRNA synthetases class I (C) catalytic domain YL1_C PF08265.6 gi|89256876|ref|YP_514238.1| - 0.066 12.7 0.1 0.14 11.7 0.1 1.5 1 0 0 1 1 1 0 YL1 nuclear protein C-terminal domain Asparaginase PF00710.15 gi|89256877|ref|YP_514239.1| - 1.6e-67 227.6 0.7 1.9e-67 227.3 0.5 1.0 1 0 0 1 1 1 1 Asparaginase SpoU_methylase PF00588.14 gi|89256878|ref|YP_514240.1| - 1.5e-36 125.3 0.0 1.7e-36 125.1 0.0 1.0 1 0 0 1 1 1 1 SpoU rRNA Methylase family Malate_DH PF12434.3 gi|89256878|ref|YP_514240.1| - 0.0022 17.6 0.1 0.0022 17.6 0.1 1.7 2 0 0 2 2 2 1 Malate dehydrogenase enzyme ALAD PF00490.16 gi|89256879|ref|YP_514241.1| - 9.7e-141 468.3 2.1 1.1e-140 468.1 1.4 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase CRS1_YhbY PF01985.16 gi|89256880|ref|YP_514242.1| - 1.1e-27 95.8 2.0 1.2e-27 95.7 1.4 1.0 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain UvrD_C PF13361.1 gi|89256880|ref|YP_514242.1| - 0.022 14.2 0.1 0.022 14.2 0.1 1.2 1 0 0 1 1 1 0 UvrD-like helicase C-terminal domain SpecificRecomb PF10136.4 gi|89256880|ref|YP_514242.1| - 0.033 12.2 0.0 0.039 12.0 0.0 1.1 1 0 0 1 1 1 0 Site-specific recombinase DNA_pol3_delta2 PF13177.1 gi|89256881|ref|YP_514243.1| - 3.7e-26 91.7 4.9 1e-25 90.2 3.4 1.8 1 1 0 1 1 1 1 DNA polymerase III, delta subunit DNApol3-delta_C PF09115.5 gi|89256881|ref|YP_514243.1| - 7e-11 42.1 5.2 7e-11 42.1 3.6 2.1 2 0 0 2 2 2 1 DNA polymerase III, delta subunit, C terminal DUF2316 PF10078.4 gi|89256881|ref|YP_514243.1| - 0.026 14.4 0.3 0.085 12.8 0.2 1.9 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2316) Peptidase_S49_N PF08496.5 gi|89256882|ref|YP_514244.1| - 3.1e-42 143.9 3.7 6.9e-42 142.8 2.6 1.5 1 0 0 1 1 1 1 Peptidase family S49 N-terminal Peptidase_S49 PF01343.13 gi|89256882|ref|YP_514244.1| - 1.1e-38 132.4 0.0 2.4e-38 131.3 0.0 1.6 1 0 0 1 1 1 1 Peptidase family S49 IncA PF04156.9 gi|89256882|ref|YP_514244.1| - 0.0001 21.9 1.0 0.00019 21.0 0.7 1.4 1 0 0 1 1 1 1 IncA protein CLP_protease PF00574.18 gi|89256882|ref|YP_514244.1| - 0.0022 17.6 4.4 0.15 11.6 0.4 2.9 3 0 0 3 3 3 2 Clp protease HAMP PF00672.20 gi|89256882|ref|YP_514244.1| - 0.019 15.1 0.1 0.048 13.8 0.1 1.7 1 0 0 1 1 1 0 HAMP domain SDH_sah PF01972.11 gi|89256882|ref|YP_514244.1| - 0.026 13.3 0.3 0.046 12.4 0.2 1.4 1 0 0 1 1 1 0 Serine dehydrogenase proteinase STAS PF01740.16 gi|89256882|ref|YP_514244.1| - 0.044 13.2 0.1 0.86 9.0 0.1 2.3 1 1 0 1 1 1 0 STAS domain GST_C PF00043.20 gi|89256883|ref|YP_514245.1| - 6e-11 42.1 0.0 8.7e-11 41.6 0.0 1.3 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_N_3 PF13417.1 gi|89256883|ref|YP_514245.1| - 1.7e-09 37.7 0.0 3.7e-09 36.6 0.0 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.1 gi|89256883|ref|YP_514245.1| - 7.6e-06 25.8 0.0 1.7e-05 24.7 0.0 1.6 2 0 0 2 2 2 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.19 gi|89256883|ref|YP_514245.1| - 0.00024 21.0 0.0 0.00048 20.0 0.0 1.5 1 0 0 1 1 1 1 Glutaredoxin GST_C_3 PF14497.1 gi|89256883|ref|YP_514245.1| - 0.0055 17.1 0.0 0.0087 16.5 0.0 1.3 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C_2 PF13410.1 gi|89256883|ref|YP_514245.1| - 0.089 12.6 0.0 0.17 11.7 0.0 1.5 1 1 0 1 1 1 0 Glutathione S-transferase, C-terminal domain GST_N PF02798.15 gi|89256883|ref|YP_514245.1| - 0.12 12.5 0.0 0.23 11.6 0.0 1.5 1 0 0 1 1 1 0 Glutathione S-transferase, N-terminal domain DsrC PF04358.8 gi|89256884|ref|YP_514246.1| - 3.1e-36 123.9 0.0 3.3e-36 123.8 0.0 1.0 1 0 0 1 1 1 1 DsrC like protein Peripla_BP_6 PF13458.1 gi|89256884|ref|YP_514246.1| - 0.028 13.7 0.0 0.03 13.6 0.0 1.1 1 0 0 1 1 1 0 Periplasmic binding protein LexA_DNA_bind PF01726.11 gi|89256884|ref|YP_514246.1| - 0.12 11.9 0.0 0.18 11.4 0.0 1.3 1 0 0 1 1 1 0 LexA DNA binding domain Iron_traffic PF04362.9 gi|89256885|ref|YP_514247.1| - 4.2e-35 119.0 0.5 4.5e-35 118.9 0.4 1.0 1 0 0 1 1 1 1 Bacterial Fe(2+) trafficking PMT_2 PF13231.1 gi|89256886|ref|YP_514248.1| - 1.3e-20 73.9 23.9 1.3e-20 73.9 16.6 4.5 2 1 2 5 5 5 2 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.13 gi|89256886|ref|YP_514248.1| - 2e-17 63.3 23.3 2e-17 63.3 16.1 3.2 2 1 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase DDE_3 PF13358.1 gi|89256887|ref|YP_514249.1| - 1.7e-31 108.9 0.0 2.8e-31 108.2 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.11 gi|89256887|ref|YP_514249.1| - 1.5e-07 31.0 0.2 1.1e-06 28.3 0.1 2.1 2 0 0 2 2 2 1 Transposase DDE_1 PF03184.14 gi|89256887|ref|YP_514249.1| - 5.8e-07 28.8 0.1 9.5e-07 28.1 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_28 PF13518.1 gi|89256887|ref|YP_514249.1| - 0.00058 19.8 0.0 0.0018 18.2 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain rve PF00665.21 gi|89256887|ref|YP_514249.1| - 0.00072 19.6 0.0 0.0013 18.7 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.1 gi|89256887|ref|YP_514249.1| - 0.0087 15.6 0.0 0.029 14.0 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.1 gi|89256887|ref|YP_514249.1| - 0.02 15.0 0.0 0.032 14.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix DDE_Tnp_ISAZ013 PF07592.6 gi|89256887|ref|YP_514249.1| - 0.039 12.6 0.6 0.32 9.7 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain Glycos_transf_2 PF00535.21 gi|89256888|ref|YP_514250.1| - 4.1e-23 81.8 0.1 5.8e-23 81.4 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 NTP_transf_3 PF12804.2 gi|89256888|ref|YP_514250.1| - 0.00064 19.8 0.0 0.00086 19.4 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Glyco_tranf_2_2 PF10111.4 gi|89256888|ref|YP_514250.1| - 0.025 13.6 0.5 0.036 13.1 0.3 1.2 1 0 0 1 1 1 0 Glycosyltransferase like family 2 Glyco_tranf_2_3 PF13641.1 gi|89256888|ref|YP_514250.1| - 0.065 13.0 0.0 0.095 12.4 0.0 1.2 1 0 0 1 1 1 0 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|89256888|ref|YP_514250.1| - 0.14 12.5 0.0 0.25 11.6 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 2 Vma12 PF11712.3 gi|89256888|ref|YP_514250.1| - 0.86 9.3 6.5 1.3 8.7 4.0 1.6 2 0 0 2 2 2 0 Endoplasmic reticulum-based factor for assembly of V-ATPase YdjC PF04794.7 gi|89256889|ref|YP_514251.1| - 2.3e-66 223.9 0.0 2.5e-66 223.8 0.0 1.0 1 0 0 1 1 1 1 YdjC-like protein FTSW_RODA_SPOVE PF01098.14 gi|89256890|ref|YP_514252.1| - 2.1e-103 345.8 32.3 2.6e-103 345.5 22.4 1.0 1 0 0 1 1 1 1 Cell cycle protein O-antigen_lig PF13425.1 gi|89256890|ref|YP_514252.1| - 0.0055 16.6 8.9 0.0055 16.6 6.2 3.7 1 1 1 3 3 3 2 O-antigen ligase like membrane protein Spore_III_AF PF09581.5 gi|89256890|ref|YP_514252.1| - 1.4 8.7 3.3 3.2 7.5 2.3 1.6 1 0 0 1 1 1 0 Stage III sporulation protein AF (Spore_III_AF) COX2-transmemb PF09125.5 gi|89256890|ref|YP_514252.1| - 9.4 5.8 10.0 1.7 8.2 0.0 3.6 3 0 0 3 3 3 0 Cytochrome C oxidase subunit II, transmembrane Mur_ligase_M PF08245.7 gi|89256891|ref|YP_514253.1| - 2.5e-28 99.4 0.0 1.4e-26 93.7 0.0 2.4 1 1 0 1 1 1 1 Mur ligase middle domain Mur_ligase_C PF02875.16 gi|89256891|ref|YP_514253.1| - 5.2e-07 29.6 0.0 1.3e-06 28.3 0.0 1.6 1 0 0 1 1 1 1 Mur ligase family, glutamate ligase domain Glycos_transf_4 PF00953.16 gi|89256892|ref|YP_514254.1| - 1.1e-34 119.5 17.9 1.1e-34 119.5 12.4 2.4 3 0 0 3 3 3 1 Glycosyl transferase family 4 MraY_sig1 PF10555.4 gi|89256892|ref|YP_514254.1| - 2.5e-05 23.2 0.3 2.5e-05 23.2 0.2 2.4 2 0 0 2 2 2 1 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 PEPCK_ATP PF01293.15 gi|89256893|ref|YP_514255.1| - 7e-145 483.1 0.9 8.1e-145 482.9 0.6 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxykinase AAA_29 PF13555.1 gi|89256893|ref|YP_514255.1| - 0.024 14.1 0.0 0.065 12.7 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_33 PF13671.1 gi|89256893|ref|YP_514255.1| - 0.052 13.4 0.0 0.13 12.1 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|89256893|ref|YP_514255.1| - 0.084 13.7 0.9 1.1 10.1 0.1 2.9 2 1 0 2 2 2 0 AAA domain APS_kinase PF01583.15 gi|89256893|ref|YP_514255.1| - 0.13 11.9 0.0 0.22 11.1 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_22 PF13401.1 gi|89256893|ref|YP_514255.1| - 0.13 12.3 0.0 0.32 11.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|89256893|ref|YP_514255.1| - 0.2 11.9 0.1 0.2 11.9 0.0 3.2 3 1 0 3 3 3 0 AAA domain AAA_18 PF13238.1 gi|89256893|ref|YP_514255.1| - 0.38 11.0 2.7 6.1 7.1 0.0 3.1 4 0 0 4 4 4 0 AAA domain tRNA-synt_1c PF00749.16 gi|89256894|ref|YP_514256.1| - 6.9e-109 363.2 0.0 8.8e-109 362.9 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.13 gi|89256894|ref|YP_514256.1| - 2.4e-52 177.1 0.1 4.3e-52 176.2 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain PMT_2 PF13231.1 gi|89256895|ref|YP_514257.1| - 6.7e-31 107.3 19.2 6.7e-31 107.3 13.3 1.8 2 0 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase DUF3311 PF11755.3 gi|89256895|ref|YP_514257.1| - 0.77 9.3 0.0 0.77 9.3 0.0 3.5 4 1 0 4 4 4 0 Protein of unknown function (DUF3311) EmrE PF13536.1 gi|89256896|ref|YP_514258.1| - 0.01 16.0 7.0 0.01 16.0 4.8 2.2 1 1 1 2 2 2 0 Multidrug resistance efflux transporter DUF3325 PF11804.3 gi|89256896|ref|YP_514258.1| - 0.03 14.2 0.3 0.072 13.0 0.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3325) Spore_III_AF PF09581.5 gi|89256896|ref|YP_514258.1| - 0.056 13.3 0.3 0.1 12.4 0.2 1.4 1 0 0 1 1 1 0 Stage III sporulation protein AF (Spore_III_AF) O-antigen_lig PF13425.1 gi|89256896|ref|YP_514258.1| - 2.8 7.9 27.1 0.034 14.1 4.7 3.1 1 1 2 3 3 3 0 O-antigen ligase like membrane protein PTR2 PF00854.16 gi|89256897|ref|YP_514259.1| - 0.0063 15.3 1.5 0.012 14.4 1.0 1.4 1 0 0 1 1 1 1 POT family MFS_1 PF07690.11 gi|89256897|ref|YP_514259.1| - 0.017 13.8 13.5 0.023 13.4 9.3 1.3 1 1 0 1 1 1 0 Major Facilitator Superfamily DALR_2 PF09190.6 gi|89256897|ref|YP_514259.1| - 0.02 15.1 0.1 0.051 13.8 0.1 1.7 1 0 0 1 1 1 0 DALR domain DUF555 PF04475.7 gi|89256897|ref|YP_514259.1| - 0.13 12.2 0.1 0.25 11.3 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF555) Fungal_trans PF04082.13 gi|89256897|ref|YP_514259.1| - 0.14 10.9 0.6 0.81 8.5 0.0 2.0 2 0 0 2 2 2 0 Fungal specific transcription factor domain DUF21 PF01595.15 gi|89256897|ref|YP_514259.1| - 0.81 8.9 6.4 6.9 5.9 4.4 2.2 1 1 0 1 1 1 0 Domain of unknown function DUF21 ABC_tran PF00005.22 gi|89256898|ref|YP_514260.1| - 9.2e-52 174.9 12.0 1.5e-26 93.3 0.0 4.1 4 0 0 4 4 4 2 ABC transporter AAA_21 PF13304.1 gi|89256898|ref|YP_514260.1| - 9.1e-21 75.0 28.6 3.2e-06 27.3 0.2 5.5 3 2 3 6 6 6 4 AAA domain ABC_tran_2 PF12848.2 gi|89256898|ref|YP_514260.1| - 2.3e-13 49.8 23.6 1.6e-12 47.0 3.6 3.8 2 1 0 2 2 2 1 ABC transporter SMC_N PF02463.14 gi|89256898|ref|YP_514260.1| - 8e-11 41.5 15.5 5e-08 32.4 0.5 4.4 3 2 0 3 3 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|89256898|ref|YP_514260.1| - 1e-07 31.3 0.1 0.013 15.0 0.0 2.6 2 0 0 2 2 2 2 P-loop containing region of AAA domain Miro PF08477.8 gi|89256898|ref|YP_514260.1| - 1e-07 32.4 1.7 0.0044 17.5 0.0 3.9 3 1 1 4 4 3 2 Miro-like protein DUF258 PF03193.11 gi|89256898|ref|YP_514260.1| - 1.1e-07 31.1 1.3 0.009 15.2 0.0 2.6 2 0 0 2 2 2 2 Protein of unknown function, DUF258 ATP-synt_ab PF00006.20 gi|89256898|ref|YP_514260.1| - 7.8e-07 28.8 0.3 0.021 14.3 0.1 2.3 2 0 0 2 2 2 2 ATP synthase alpha/beta family, nucleotide-binding domain AAA_16 PF13191.1 gi|89256898|ref|YP_514260.1| - 1e-06 28.8 0.0 0.05 13.5 0.0 2.8 2 0 0 2 2 2 2 AAA ATPase domain AAA_17 PF13207.1 gi|89256898|ref|YP_514260.1| - 1e-05 26.3 8.2 0.38 11.5 0.2 4.0 3 1 0 3 3 3 2 AAA domain MMR_HSR1 PF01926.18 gi|89256898|ref|YP_514260.1| - 2.2e-05 24.3 1.5 0.11 12.4 0.0 3.5 4 0 0 4 4 2 2 50S ribosome-binding GTPase PduV-EutP PF10662.4 gi|89256898|ref|YP_514260.1| - 4.5e-05 22.9 0.4 0.14 11.6 0.1 2.7 2 0 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation Dynamin_N PF00350.18 gi|89256898|ref|YP_514260.1| - 5.3e-05 23.1 10.4 0.061 13.1 0.0 4.1 3 1 0 3 3 3 2 Dynamin family AAA_22 PF13401.1 gi|89256898|ref|YP_514260.1| - 5.4e-05 23.3 8.9 0.013 15.6 0.4 4.4 3 2 0 3 3 2 2 AAA domain NACHT PF05729.7 gi|89256898|ref|YP_514260.1| - 0.00019 21.1 0.7 0.13 11.9 0.0 2.7 2 0 0 2 2 2 1 NACHT domain T2SE PF00437.15 gi|89256898|ref|YP_514260.1| - 0.00021 20.2 1.0 0.0036 16.2 0.1 2.4 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_28 PF13521.1 gi|89256898|ref|YP_514260.1| - 0.00021 21.2 0.0 0.17 11.8 0.0 2.9 2 0 0 2 2 2 1 AAA domain AAA_24 PF13479.1 gi|89256898|ref|YP_514260.1| - 0.00035 20.2 3.4 0.069 12.7 0.0 3.4 4 0 0 4 4 2 1 AAA domain AAA_25 PF13481.1 gi|89256898|ref|YP_514260.1| - 0.00047 19.6 0.0 2.6 7.4 0.0 3.6 4 0 0 4 4 4 2 AAA domain SbcCD_C PF13558.1 gi|89256898|ref|YP_514260.1| - 0.00083 19.2 0.4 4.4 7.3 0.0 3.6 2 2 0 2 2 2 0 Putative exonuclease SbcCD, C subunit AAA PF00004.24 gi|89256898|ref|YP_514260.1| - 0.0014 18.8 0.3 3.3 7.9 0.0 3.7 3 0 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) FeoB_N PF02421.13 gi|89256898|ref|YP_514260.1| - 0.0022 17.3 0.4 0.07 12.4 0.1 2.6 2 0 0 2 2 2 1 Ferrous iron transport protein B AAA_10 PF12846.2 gi|89256898|ref|YP_514260.1| - 0.0025 17.3 0.0 0.17 11.2 0.0 2.8 3 0 0 3 3 3 1 AAA-like domain AAA_5 PF07728.9 gi|89256898|ref|YP_514260.1| - 0.005 16.5 0.0 1.5 8.5 0.0 3.2 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) RNA_helicase PF00910.17 gi|89256898|ref|YP_514260.1| - 0.0079 16.3 0.0 6 7.0 0.0 2.9 2 0 0 2 2 2 0 RNA helicase AAA_30 PF13604.1 gi|89256898|ref|YP_514260.1| - 0.0096 15.5 0.0 2 7.9 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|89256898|ref|YP_514260.1| - 0.013 15.3 5.2 0.13 12.1 0.4 4.2 3 1 0 3 3 3 0 AAA domain SRP54 PF00448.17 gi|89256898|ref|YP_514260.1| - 0.018 14.4 0.1 0.11 11.9 0.0 2.2 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain FtsK_SpoIIIE PF01580.13 gi|89256898|ref|YP_514260.1| - 0.027 13.9 2.7 2.3 7.6 0.2 3.1 2 1 1 3 3 3 0 FtsK/SpoIIIE family Mg_chelatase PF01078.16 gi|89256898|ref|YP_514260.1| - 0.029 13.5 0.1 4.3 6.4 0.0 2.6 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI MobB PF03205.9 gi|89256898|ref|YP_514260.1| - 0.029 14.0 0.6 5.9 6.5 0.1 3.0 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_15 PF13175.1 gi|89256898|ref|YP_514260.1| - 0.029 13.4 0.2 0.029 13.4 0.2 5.7 2 1 0 3 3 2 0 AAA ATPase domain Ras PF00071.17 gi|89256898|ref|YP_514260.1| - 0.031 13.6 2.0 1.2 8.4 0.0 2.9 3 0 0 3 3 3 0 Ras family AAA_33 PF13671.1 gi|89256898|ref|YP_514260.1| - 0.045 13.6 1.6 3.4 7.5 0.0 3.5 3 0 0 3 3 3 0 AAA domain AAA_23 PF13476.1 gi|89256898|ref|YP_514260.1| - 0.062 13.6 48.2 0.31 11.3 18.4 4.5 1 1 1 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|89256898|ref|YP_514260.1| - 0.081 12.6 1.3 17 5.2 0.0 3.0 3 0 0 3 3 2 0 Part of AAA domain UPF0079 PF02367.12 gi|89256898|ref|YP_514260.1| - 0.092 12.3 1.8 5 6.7 0.0 2.8 3 0 0 3 3 2 0 Uncharacterised P-loop hydrolase UPF0079 DUF4613 PF15390.1 gi|89256898|ref|YP_514260.1| - 0.38 8.8 7.8 0.044 11.9 2.2 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4613) HalX PF08663.5 gi|89256898|ref|YP_514260.1| - 1.3 9.0 7.1 1.4 8.9 0.5 3.3 3 1 1 4 4 4 0 HalX domain AAA_18 PF13238.1 gi|89256898|ref|YP_514260.1| - 1.6 9.0 16.2 2.8 8.2 0.3 4.7 3 2 2 5 5 5 0 AAA domain FlaC_arch PF05377.6 gi|89256898|ref|YP_514260.1| - 1.6 8.7 7.0 3.9 7.4 0.1 3.3 2 1 1 3 3 2 0 Flagella accessory protein C (FlaC) MFS_1 PF07690.11 gi|89256899|ref|YP_514261.1| - 7.1e-36 123.6 53.0 3.1e-35 121.5 28.8 1.6 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|89256899|ref|YP_514261.1| - 2.9e-09 36.0 12.6 2.9e-09 36.0 8.8 2.5 2 1 0 2 2 2 1 Sugar (and other) transporter MFS_2 PF13347.1 gi|89256899|ref|YP_514261.1| - 3.4e-09 35.6 34.4 2.2e-05 23.0 16.4 2.2 1 1 1 2 2 2 2 MFS/sugar transport protein FUSC PF04632.7 gi|89256900|ref|YP_514262.1| - 3.9e-24 85.0 0.5 5.4e-24 84.6 0.4 1.1 1 0 0 1 1 1 1 Fusaric acid resistance protein family FUSC_2 PF13515.1 gi|89256900|ref|YP_514262.1| - 1e-17 64.2 16.6 1e-17 64.2 11.5 1.6 1 1 1 2 2 2 1 Fusaric acid resistance protein-like ALMT PF11744.3 gi|89256900|ref|YP_514262.1| - 6.9e-14 51.3 13.7 1.4e-13 50.3 8.6 1.8 1 1 1 2 2 2 1 Aluminium activated malate transporter DUF939 PF06081.6 gi|89256900|ref|YP_514262.1| - 1.3e-07 31.6 18.2 2.3e-07 30.7 12.6 1.4 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF939) Transgly_assoc PF04226.8 gi|89256900|ref|YP_514262.1| - 0.028 14.5 3.0 0.31 11.1 0.3 2.7 2 0 0 2 2 2 0 Transglycosylase associated protein DUF4396 PF14342.1 gi|89256900|ref|YP_514262.1| - 3.8 7.6 11.1 0.22 11.6 0.2 2.9 1 1 1 3 3 3 0 Domain of unknown function (DUF4396) MFS_1 PF07690.11 gi|89256901|ref|YP_514263.1| - 5.6e-38 130.5 30.0 5.6e-38 130.5 20.8 1.4 1 1 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|89256901|ref|YP_514263.1| - 5.1e-09 35.2 8.2 5.1e-09 35.2 5.7 2.8 1 1 0 2 2 2 1 Sugar (and other) transporter DUF1275 PF06912.6 gi|89256902|ref|YP_514264.1| - 6e-24 84.4 17.4 6.6e-24 84.2 12.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1275) Caps_synth PF05704.7 gi|89256902|ref|YP_514264.1| - 0.67 9.0 4.7 3.6 6.6 3.3 1.9 1 1 0 1 1 1 0 Capsular polysaccharide synthesis protein DUF3353 PF11833.3 gi|89256902|ref|YP_514264.1| - 3.5 7.0 5.5 2.5 7.5 0.9 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3353) SpoU_methylase PF00588.14 gi|89256903|ref|YP_514265.1| - 8e-07 29.0 0.0 1e-06 28.6 0.0 1.1 1 0 0 1 1 1 1 SpoU rRNA Methylase family DDE_3 PF13358.1 gi|89256904|ref|YP_514266.1| - 1.7e-31 108.9 0.0 2.8e-31 108.2 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.11 gi|89256904|ref|YP_514266.1| - 1.5e-07 31.0 0.2 1.1e-06 28.3 0.1 2.1 2 0 0 2 2 2 1 Transposase DDE_1 PF03184.14 gi|89256904|ref|YP_514266.1| - 5.8e-07 28.8 0.1 9.5e-07 28.1 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_28 PF13518.1 gi|89256904|ref|YP_514266.1| - 0.00058 19.8 0.0 0.0018 18.2 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain rve PF00665.21 gi|89256904|ref|YP_514266.1| - 0.00072 19.6 0.0 0.0013 18.7 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.1 gi|89256904|ref|YP_514266.1| - 0.0087 15.6 0.0 0.029 14.0 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.1 gi|89256904|ref|YP_514266.1| - 0.02 15.0 0.0 0.032 14.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix DDE_Tnp_ISAZ013 PF07592.6 gi|89256904|ref|YP_514266.1| - 0.039 12.6 0.6 0.32 9.7 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain DUF2569 PF10754.4 gi|89256905|ref|YP_514267.1| - 0.023 14.9 0.0 0.042 14.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2569) Wzz PF02706.10 gi|89256905|ref|YP_514267.1| - 0.43 10.4 2.6 0.39 10.5 0.1 2.0 2 1 0 2 2 2 0 Chain length determinant protein DDE_3 PF13358.1 gi|89256907|ref|YP_514269.1| - 1.7e-31 108.9 0.0 2.8e-31 108.2 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.11 gi|89256907|ref|YP_514269.1| - 1.5e-07 31.0 0.2 1.1e-06 28.3 0.1 2.1 2 0 0 2 2 2 1 Transposase DDE_1 PF03184.14 gi|89256907|ref|YP_514269.1| - 5.8e-07 28.8 0.1 9.5e-07 28.1 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_28 PF13518.1 gi|89256907|ref|YP_514269.1| - 0.00058 19.8 0.0 0.0018 18.2 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain rve PF00665.21 gi|89256907|ref|YP_514269.1| - 0.00072 19.6 0.0 0.0013 18.7 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.1 gi|89256907|ref|YP_514269.1| - 0.0087 15.6 0.0 0.029 14.0 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.1 gi|89256907|ref|YP_514269.1| - 0.02 15.0 0.0 0.032 14.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix DDE_Tnp_ISAZ013 PF07592.6 gi|89256907|ref|YP_514269.1| - 0.039 12.6 0.6 0.32 9.7 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain RPAP3_C PF13877.1 gi|89256908|ref|YP_514270.1| - 0.02 14.8 0.1 0.044 13.7 0.1 1.6 1 0 0 1 1 1 0 Potential Monad-binding region of RPAP3 HATPase_c_4 PF13749.1 gi|89256909|ref|YP_514271.1| - 0.14 11.9 0.0 0.19 11.5 0.0 1.2 1 0 0 1 1 1 0 ATP-dependent DNA helicase recG C-terminal CAP_C PF08603.6 gi|89256910|ref|YP_514272.1| - 0.037 13.3 2.4 0.052 12.8 1.6 1.2 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) C terminal LysR_substrate PF03466.15 gi|89256911|ref|YP_514273.1| - 9.1e-24 83.7 0.0 2.2e-17 62.8 0.0 2.1 2 0 0 2 2 2 2 LysR substrate binding domain HTH_1 PF00126.22 gi|89256911|ref|YP_514273.1| - 1.1e-14 53.9 0.0 2.1e-14 52.9 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family Toxin-deaminase PF14424.1 gi|89256911|ref|YP_514273.1| - 0.0043 17.0 0.2 0.011 15.7 0.0 1.7 2 0 0 2 2 2 1 The BURPS668_1122 family of deaminases CagZ PF09053.5 gi|89256911|ref|YP_514273.1| - 0.07 12.4 4.2 3.7 6.8 0.1 3.0 3 0 0 3 3 3 0 CagZ CBM_5_12 PF02839.9 gi|89256912|ref|YP_514274.1| - 1.9e-23 81.7 41.2 2.1e-13 49.6 8.7 3.2 3 0 0 3 3 3 2 Carbohydrate binding domain CTDII PF01556.13 gi|89256912|ref|YP_514274.1| - 0.035 14.0 0.4 4.9 7.1 0.0 2.6 2 0 0 2 2 2 0 DnaJ C terminal domain CBM_5_12_2 PF14600.1 gi|89256912|ref|YP_514274.1| - 0.063 12.9 22.8 0.04 13.5 3.0 3.6 2 1 1 3 3 3 0 Cellulose-binding domain Tmp39 PF10271.4 gi|89256912|ref|YP_514274.1| - 0.93 8.0 4.4 1.9 7.0 0.5 2.1 1 1 1 2 2 2 0 Putative transmembrane protein Glyco_hydro_18 PF00704.23 gi|89256913|ref|YP_514275.1| - 0.011 15.2 0.0 0.015 14.7 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolases family 18 VacJ PF04333.8 gi|89256914|ref|YP_514276.1| - 2.4e-42 144.6 0.6 3.5e-42 144.1 0.4 1.2 1 0 0 1 1 1 1 VacJ like lipoprotein Methyltransf_31 PF13847.1 gi|89256915|ref|YP_514277.1| - 1.7e-23 82.8 0.4 2.2e-23 82.5 0.3 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|89256915|ref|YP_514277.1| - 5.6e-23 81.4 0.0 7.4e-23 81.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|89256915|ref|YP_514277.1| - 2.2e-18 66.5 0.0 3.2e-18 65.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|89256915|ref|YP_514277.1| - 1.6e-14 54.1 0.0 3.1e-14 53.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|89256915|ref|YP_514277.1| - 4.9e-13 49.6 0.0 7e-13 49.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|89256915|ref|YP_514277.1| - 9.6e-12 45.1 0.0 1.6e-11 44.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|89256915|ref|YP_514277.1| - 2.9e-10 39.7 0.3 3.9e-10 39.3 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.9 gi|89256915|ref|YP_514277.1| - 2.3e-09 36.8 0.1 4e-09 36.0 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase small domain NodS PF05401.6 gi|89256915|ref|YP_514277.1| - 1.9e-07 30.7 0.0 2.3e-07 30.4 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) TehB PF03848.9 gi|89256915|ref|YP_514277.1| - 2.9e-07 29.8 0.1 3.6e-07 29.5 0.1 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB CMAS PF02353.15 gi|89256915|ref|YP_514277.1| - 1e-06 28.0 0.0 1.6e-06 27.4 0.0 1.3 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase DREV PF05219.7 gi|89256915|ref|YP_514277.1| - 5.3e-06 25.5 0.1 2.2e-05 23.4 0.0 1.7 1 1 1 2 2 2 1 DREV methyltransferase Methyltransf_32 PF13679.1 gi|89256915|ref|YP_514277.1| - 7.7e-06 25.6 0.1 1.3e-05 24.9 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain TPMT PF05724.6 gi|89256915|ref|YP_514277.1| - 0.00033 20.1 0.0 0.00049 19.6 0.0 1.2 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) Methyltransf_26 PF13659.1 gi|89256915|ref|YP_514277.1| - 0.00035 20.5 0.0 0.00061 19.8 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_9 PF08003.6 gi|89256915|ref|YP_514277.1| - 0.00067 18.4 0.0 0.00087 18.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) MetW PF07021.7 gi|89256915|ref|YP_514277.1| - 0.00092 18.6 0.0 0.0013 18.1 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW GidB PF02527.10 gi|89256915|ref|YP_514277.1| - 0.0065 15.6 0.0 0.0094 15.1 0.0 1.2 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G AdoMet_MTase PF07757.8 gi|89256915|ref|YP_514277.1| - 0.049 13.7 0.0 0.084 12.9 0.0 1.5 1 0 0 1 1 1 0 Predicted AdoMet-dependent methyltransferase DnaB_2 PF07261.6 gi|89256915|ref|YP_514277.1| - 0.052 13.1 0.0 0.2 11.3 0.0 2.0 2 0 0 2 2 2 0 Replication initiation and membrane attachment Methyltransf_5 PF01795.14 gi|89256915|ref|YP_514277.1| - 0.097 11.9 0.1 0.15 11.3 0.1 1.2 1 0 0 1 1 1 0 MraW methylase family VPS28 PF03997.7 gi|89256916|ref|YP_514278.1| - 0.024 14.2 1.6 0.024 14.2 1.1 1.9 2 0 0 2 2 2 0 VPS28 protein RsbU_N PF08673.5 gi|89256916|ref|YP_514278.1| - 0.18 11.8 2.6 0.2 11.6 0.0 2.3 3 0 0 3 3 3 0 Phosphoserine phosphatase RsbU, N-terminal domain ACDC PF14733.1 gi|89256916|ref|YP_514278.1| - 0.35 10.9 10.3 0.054 13.6 2.7 2.4 2 1 0 2 2 2 0 AP2-coincident C-terminal DUF972 PF06156.8 gi|89256916|ref|YP_514278.1| - 1.4 9.2 5.3 0.87 9.9 1.7 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF972) AA_permease_2 PF13520.1 gi|89256917|ref|YP_514279.1| - 1.9e-37 128.8 57.4 1.9e-37 128.8 39.8 2.2 1 1 1 2 2 2 1 Amino acid permease AA_permease PF00324.16 gi|89256917|ref|YP_514279.1| - 1.9e-21 75.9 47.2 1.9e-21 75.9 32.7 2.6 1 1 2 3 3 3 1 Amino acid permease DUF4282 PF14110.1 gi|89256918|ref|YP_514280.1| - 7.2e-17 61.3 7.1 9.7e-17 60.9 4.9 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4282) DUF4481 PF14800.1 gi|89256918|ref|YP_514280.1| - 0.05 12.4 0.9 0.056 12.3 0.6 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4481) ZYG-11_interact PF05884.7 gi|89256918|ref|YP_514280.1| - 0.078 12.0 4.7 0.083 11.9 3.3 1.0 1 0 0 1 1 1 0 Interactor of ZYG-11 DUF4321 PF14209.1 gi|89256919|ref|YP_514281.1| - 0.13 12.0 3.2 0.37 10.5 2.2 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4321) DDE_3 PF13358.1 gi|89256920|ref|YP_514282.1| - 1.7e-31 108.9 0.0 2.8e-31 108.2 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.11 gi|89256920|ref|YP_514282.1| - 1.5e-07 31.0 0.2 1.1e-06 28.3 0.1 2.1 2 0 0 2 2 2 1 Transposase DDE_1 PF03184.14 gi|89256920|ref|YP_514282.1| - 5.8e-07 28.8 0.1 9.5e-07 28.1 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_28 PF13518.1 gi|89256920|ref|YP_514282.1| - 0.00058 19.8 0.0 0.0018 18.2 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain rve PF00665.21 gi|89256920|ref|YP_514282.1| - 0.00072 19.6 0.0 0.0013 18.7 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.1 gi|89256920|ref|YP_514282.1| - 0.0087 15.6 0.0 0.029 14.0 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.1 gi|89256920|ref|YP_514282.1| - 0.02 15.0 0.0 0.032 14.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix DDE_Tnp_ISAZ013 PF07592.6 gi|89256920|ref|YP_514282.1| - 0.039 12.6 0.6 0.32 9.7 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain FGGY_N PF00370.16 gi|89256921|ref|YP_514283.1| - 9.8e-81 270.6 0.3 1.3e-80 270.2 0.2 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.11 gi|89256921|ref|YP_514283.1| - 6.8e-55 185.7 0.1 1.9e-54 184.3 0.0 1.7 2 0 0 2 2 2 1 FGGY family of carbohydrate kinases, C-terminal domain BcrAD_BadFG PF01869.15 gi|89256921|ref|YP_514283.1| - 8.8e-05 21.9 0.2 0.29 10.3 0.0 2.2 2 0 0 2 2 2 2 BadF/BadG/BcrA/BcrD ATPase family MFS_1 PF07690.11 gi|89256922|ref|YP_514284.1| - 8.8e-36 123.3 44.8 7.7e-29 100.5 11.2 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|89256922|ref|YP_514284.1| - 6.9e-06 24.9 13.8 6.9e-06 24.9 9.6 2.5 1 1 1 2 2 2 1 Sugar (and other) transporter MFS_2 PF13347.1 gi|89256922|ref|YP_514284.1| - 0.0004 18.9 19.9 0.0004 18.9 13.8 2.5 2 1 0 2 2 2 2 MFS/sugar transport protein MFS_1 PF07690.11 gi|89256924|ref|YP_514286.1| - 2.3e-30 105.5 30.9 2.3e-30 105.5 21.4 1.6 1 1 0 1 1 1 1 Major Facilitator Superfamily TRI9 PF08195.6 gi|89256924|ref|YP_514286.1| - 0.028 14.0 0.1 0.065 12.8 0.0 1.6 1 0 0 1 1 1 0 TRI9 protein ABC_tran PF00005.22 gi|89256925|ref|YP_514287.1| - 1.8e-26 93.0 0.0 2.3e-26 92.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|89256925|ref|YP_514287.1| - 1.3e-08 35.2 1.3 6.5e-07 29.5 0.9 2.1 1 1 0 1 1 1 1 AAA domain oligo_HPY PF08352.7 gi|89256925|ref|YP_514287.1| - 4.5e-08 33.3 0.0 9.4e-08 32.3 0.0 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region SMC_N PF02463.14 gi|89256925|ref|YP_514287.1| - 0.00012 21.4 0.2 0.0002 20.6 0.2 1.3 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|89256925|ref|YP_514287.1| - 0.00061 18.9 1.0 0.006 15.6 0.4 2.0 1 1 1 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|89256925|ref|YP_514287.1| - 0.002 17.6 0.3 0.0041 16.6 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|89256925|ref|YP_514287.1| - 0.015 14.7 0.1 0.042 13.2 0.0 1.7 2 0 0 2 2 2 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|89256925|ref|YP_514287.1| - 0.016 14.6 0.1 0.029 13.8 0.1 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family DUF87 PF01935.12 gi|89256925|ref|YP_514287.1| - 0.018 14.8 0.3 0.036 13.8 0.2 1.4 1 0 0 1 1 1 0 Domain of unknown function DUF87 Pox_A32 PF04665.7 gi|89256925|ref|YP_514287.1| - 0.089 12.0 1.6 2.9 7.1 0.2 2.3 2 0 0 2 2 2 0 Poxvirus A32 protein CbiA PF01656.18 gi|89256925|ref|YP_514287.1| - 0.1 11.9 1.5 2.6 7.4 0.2 2.3 2 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_22 PF13401.1 gi|89256925|ref|YP_514287.1| - 0.1 12.7 1.7 1.4 9.0 1.2 2.2 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|89256925|ref|YP_514287.1| - 0.12 11.5 0.1 0.19 10.9 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 DUF3430 PF11912.3 gi|89256926|ref|YP_514288.1| - 0.03 14.1 2.2 0.039 13.7 1.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3430) SBP_bac_5 PF00496.17 gi|89256927|ref|YP_514289.1| - 1.2e-65 221.7 10.4 1.4e-65 221.5 7.2 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle DUF2066 PF09839.4 gi|89256927|ref|YP_514289.1| - 0.0031 16.6 0.1 0.0059 15.7 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2066) LPAM_1 PF08139.7 gi|89256927|ref|YP_514289.1| - 0.22 11.7 1.7 0.37 11.0 1.2 1.4 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site DDE_Tnp_1_2 PF13586.1 gi|89256928|ref|YP_514290.1| - 4.4e-16 58.8 0.1 1.3e-15 57.3 0.1 1.8 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|89256928|ref|YP_514290.1| - 2.5e-13 50.0 1.1 8.7e-13 48.2 0.8 1.7 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|89256928|ref|YP_514290.1| - 2.1e-09 37.3 0.1 2.9e-09 36.8 0.1 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF4096 PF13340.1 gi|89256928|ref|YP_514290.1| - 0.00058 19.6 0.0 0.0012 18.7 0.0 1.5 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) UvrD_C PF13361.1 gi|89256929|ref|YP_514291.1| - 2.4e-92 310.1 9.9 2.4e-92 310.1 6.9 2.1 2 0 0 2 2 2 1 UvrD-like helicase C-terminal domain UvrD-helicase PF00580.16 gi|89256929|ref|YP_514291.1| - 1.1e-74 251.5 10.3 1.1e-74 251.5 7.2 3.0 2 2 1 3 3 3 1 UvrD/REP helicase N-terminal domain AAA_19 PF13245.1 gi|89256929|ref|YP_514291.1| - 9.3e-12 44.5 0.0 2.3e-11 43.2 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain UvrD_C_2 PF13538.1 gi|89256929|ref|YP_514291.1| - 3.8e-09 36.6 1.0 1.8e-08 34.4 0.0 2.6 2 1 0 2 2 2 1 UvrD-like helicase C-terminal domain Exonuc_V_gamma PF04257.9 gi|89256929|ref|YP_514291.1| - 7.1e-06 24.3 1.5 7.1e-06 24.3 1.0 1.6 2 0 0 2 2 2 1 Exodeoxyribonuclease V, gamma subunit AAA_30 PF13604.1 gi|89256929|ref|YP_514291.1| - 2.5e-05 23.9 0.1 0.00016 21.3 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|89256929|ref|YP_514291.1| - 0.00093 19.2 1.0 0.0029 17.6 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain Viral_helicase1 PF01443.13 gi|89256929|ref|YP_514291.1| - 0.0028 17.2 2.9 3.2 7.1 0.1 4.1 3 1 0 3 3 3 1 Viral (Superfamily 1) RNA helicase DEAD PF00270.24 gi|89256929|ref|YP_514291.1| - 0.024 14.1 1.1 0.3 10.5 0.7 2.9 1 1 0 1 1 1 0 DEAD/DEAH box helicase DUF3243 PF11588.3 gi|89256929|ref|YP_514291.1| - 0.043 13.8 0.3 0.45 10.5 0.0 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3243) ResIII PF04851.10 gi|89256929|ref|YP_514291.1| - 1 9.1 7.4 3.4 7.4 2.9 3.0 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_14 PF13173.1 gi|89256929|ref|YP_514291.1| - 1 9.2 7.2 5.6 6.8 2.7 3.1 1 1 0 2 2 2 0 AAA domain SRP54 PF00448.17 gi|89256930|ref|YP_514292.1| - 5.5e-75 251.1 4.1 8.2e-75 250.5 2.9 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.14 gi|89256930|ref|YP_514292.1| - 1e-16 60.7 0.8 1e-16 60.7 0.5 2.2 3 0 0 3 3 1 1 SRP54-type protein, helical bundle domain Zeta_toxin PF06414.7 gi|89256930|ref|YP_514292.1| - 4.4e-08 32.4 0.2 7.6e-08 31.6 0.1 1.3 1 0 0 1 1 1 1 Zeta toxin AAA_22 PF13401.1 gi|89256930|ref|YP_514292.1| - 2.9e-06 27.4 0.6 2.4e-05 24.4 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|89256930|ref|YP_514292.1| - 2.3e-05 24.4 0.0 5.2e-05 23.3 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain APS_kinase PF01583.15 gi|89256930|ref|YP_514292.1| - 3.7e-05 23.4 0.6 0.00031 20.4 0.0 2.5 3 0 0 3 3 2 1 Adenylylsulphate kinase AAA_30 PF13604.1 gi|89256930|ref|YP_514292.1| - 3.8e-05 23.3 2.1 7.1e-05 22.4 1.5 1.5 1 1 0 1 1 1 1 AAA domain DUF2075 PF09848.4 gi|89256930|ref|YP_514292.1| - 0.00011 21.3 0.5 0.00018 20.6 0.4 1.3 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_33 PF13671.1 gi|89256930|ref|YP_514292.1| - 0.00016 21.5 0.4 0.00026 20.8 0.1 1.7 2 0 0 2 2 1 1 AAA domain MobB PF03205.9 gi|89256930|ref|YP_514292.1| - 0.00036 20.2 2.9 0.00043 19.9 0.9 1.9 2 0 0 2 2 1 1 Molybdopterin guanine dinucleotide synthesis protein B MMR_HSR1 PF01926.18 gi|89256930|ref|YP_514292.1| - 0.00052 19.9 1.2 0.00052 19.9 0.8 1.7 2 0 0 2 2 1 1 50S ribosome-binding GTPase AAA PF00004.24 gi|89256930|ref|YP_514292.1| - 0.0016 18.6 0.3 0.0039 17.3 0.1 1.8 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.22 gi|89256930|ref|YP_514292.1| - 0.0018 18.5 0.1 0.004 17.4 0.1 1.6 1 0 0 1 1 1 1 ABC transporter Thymidylate_kin PF02223.12 gi|89256930|ref|YP_514292.1| - 0.002 17.5 0.2 0.0073 15.7 0.0 2.0 2 0 0 2 2 2 1 Thymidylate kinase Arch_ATPase PF01637.13 gi|89256930|ref|YP_514292.1| - 0.0021 17.8 0.8 0.0042 16.8 0.0 1.9 2 0 0 2 2 2 1 Archaeal ATPase CbiA PF01656.18 gi|89256930|ref|YP_514292.1| - 0.0021 17.4 7.9 0.0029 17.0 3.8 2.2 2 1 0 2 2 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain VirC1 PF07015.6 gi|89256930|ref|YP_514292.1| - 0.0021 17.1 0.0 0.004 16.2 0.0 1.4 1 0 0 1 1 1 1 VirC1 protein AAA_17 PF13207.1 gi|89256930|ref|YP_514292.1| - 0.0024 18.6 0.2 0.0071 17.1 0.1 1.9 1 1 0 1 1 1 1 AAA domain ArgK PF03308.11 gi|89256930|ref|YP_514292.1| - 0.0045 15.8 1.4 0.0074 15.0 0.2 1.9 2 0 0 2 2 2 1 ArgK protein AAA_18 PF13238.1 gi|89256930|ref|YP_514292.1| - 0.007 16.6 0.3 0.018 15.3 0.2 1.9 1 1 0 1 1 1 1 AAA domain Fumble PF03630.9 gi|89256930|ref|YP_514292.1| - 0.0073 15.1 0.2 0.013 14.3 0.1 1.4 1 0 0 1 1 1 1 Fumble TrwB_AAD_bind PF10412.4 gi|89256930|ref|YP_514292.1| - 0.011 14.3 0.9 0.054 12.0 0.1 2.0 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain MdcE PF06833.6 gi|89256930|ref|YP_514292.1| - 0.012 14.8 1.0 0.019 14.2 0.7 1.3 1 0 0 1 1 1 0 Malonate decarboxylase gamma subunit (MdcE) AAA_25 PF13481.1 gi|89256930|ref|YP_514292.1| - 0.012 15.0 0.9 0.028 13.8 0.6 1.6 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|89256930|ref|YP_514292.1| - 0.013 15.3 0.1 0.035 14.0 0.0 1.7 2 0 0 2 2 1 0 AAA domain AAA_19 PF13245.1 gi|89256930|ref|YP_514292.1| - 0.017 14.8 0.2 0.043 13.5 0.1 1.8 2 0 0 2 2 1 0 Part of AAA domain ORC3_N PF07034.6 gi|89256930|ref|YP_514292.1| - 0.029 13.3 0.2 0.098 11.6 0.1 1.8 1 1 1 2 2 2 0 Origin recognition complex (ORC) subunit 3 N-terminus FtsK_SpoIIIE PF01580.13 gi|89256930|ref|YP_514292.1| - 0.034 13.6 0.0 0.059 12.8 0.0 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_5 PF07728.9 gi|89256930|ref|YP_514292.1| - 0.048 13.3 1.4 0.33 10.6 0.1 2.4 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) KTI12 PF08433.5 gi|89256930|ref|YP_514292.1| - 0.049 12.8 0.3 0.13 11.4 0.1 1.8 1 1 0 1 1 1 0 Chromatin associated protein KTI12 AAA_31 PF13614.1 gi|89256930|ref|YP_514292.1| - 0.051 13.5 0.1 0.94 9.3 0.0 2.6 2 1 1 3 3 2 0 AAA domain ChitinaseA_N PF08329.5 gi|89256930|ref|YP_514292.1| - 0.059 13.1 0.1 0.12 12.1 0.1 1.5 1 1 0 1 1 1 0 Chitinase A, N-terminal domain NB-ARC PF00931.17 gi|89256930|ref|YP_514292.1| - 0.059 12.2 2.2 0.19 10.5 0.2 2.5 3 0 0 3 3 3 0 NB-ARC domain ClpB_D2-small PF10431.4 gi|89256930|ref|YP_514292.1| - 0.069 13.0 0.2 0.22 11.4 0.1 1.8 1 0 0 1 1 1 0 C-terminal, D2-small domain, of ClpB protein AAA_24 PF13479.1 gi|89256930|ref|YP_514292.1| - 0.073 12.6 1.6 0.2 11.2 1.1 1.7 1 1 0 1 1 1 0 AAA domain Septin PF00735.13 gi|89256930|ref|YP_514292.1| - 0.079 11.9 3.5 1.1 8.2 2.4 2.2 1 1 0 1 1 1 0 Septin ATP_bind_1 PF03029.12 gi|89256930|ref|YP_514292.1| - 0.082 12.4 1.1 0.17 11.3 0.4 1.7 2 0 0 2 2 1 0 Conserved hypothetical ATP binding protein ADK PF00406.17 gi|89256930|ref|YP_514292.1| - 0.084 12.7 0.4 1.9 8.3 0.0 2.5 2 0 0 2 2 2 0 Adenylate kinase RNA_helicase PF00910.17 gi|89256930|ref|YP_514292.1| - 0.13 12.4 0.3 0.68 10.1 0.2 2.3 1 1 1 2 2 2 0 RNA helicase NACHT PF05729.7 gi|89256930|ref|YP_514292.1| - 0.14 11.8 0.7 0.37 10.4 0.5 1.7 1 0 0 1 1 1 0 NACHT domain cobW PF02492.14 gi|89256930|ref|YP_514292.1| - 0.15 11.5 5.4 0.53 9.7 3.8 1.9 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain NTPase_1 PF03266.10 gi|89256930|ref|YP_514292.1| - 0.19 11.4 8.3 0.1 12.3 1.5 2.8 2 1 1 3 3 3 0 NTPase RRF_GI PF12614.3 gi|89256930|ref|YP_514292.1| - 0.31 10.8 2.2 2 8.2 0.2 2.6 3 0 0 3 3 2 0 Ribosome recycling factor AAA_29 PF13555.1 gi|89256930|ref|YP_514292.1| - 0.82 9.2 4.3 0.84 9.2 0.4 2.9 3 1 0 3 3 3 0 P-loop containing region of AAA domain LysM PF01476.15 gi|89256931|ref|YP_514293.1| - 5.7e-08 32.5 0.2 1.4e-07 31.2 0.1 1.7 1 0 0 1 1 1 1 LysM domain TPR_17 PF13431.1 gi|89256931|ref|YP_514293.1| - 0.056 13.6 0.0 0.14 12.4 0.0 1.6 1 0 0 1 1 1 0 Tetratricopeptide repeat TPR_19 PF14559.1 gi|89256931|ref|YP_514293.1| - 0.067 13.5 0.1 0.17 12.2 0.0 1.7 1 1 0 1 1 1 0 Tetratricopeptide repeat GTP_EFTU PF00009.22 gi|89256932|ref|YP_514294.1| - 2.7e-45 154.1 0.0 4.1e-45 153.5 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D2 PF03144.20 gi|89256932|ref|YP_514294.1| - 4.3e-11 42.7 0.0 9.7e-11 41.6 0.0 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|89256932|ref|YP_514294.1| - 2.3e-06 27.5 0.1 4.1e-06 26.7 0.1 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase Miro PF08477.8 gi|89256932|ref|YP_514294.1| - 0.00019 21.8 0.1 0.00038 20.9 0.0 1.5 1 0 0 1 1 1 1 Miro-like protein EFG_II PF14492.1 gi|89256932|ref|YP_514294.1| - 0.011 15.5 0.0 0.031 14.1 0.0 1.7 1 0 0 1 1 1 0 Elongation Factor G, domain II HTH_33 PF13592.1 gi|89256932|ref|YP_514294.1| - 0.065 12.7 0.7 4.3 6.9 0.0 2.9 3 0 0 3 3 3 0 Winged helix-turn helix Thymidylate_kin PF02223.12 gi|89256933|ref|YP_514295.1| - 2.8e-51 173.5 0.0 3.2e-51 173.3 0.0 1.0 1 0 0 1 1 1 1 Thymidylate kinase AAA_28 PF13521.1 gi|89256933|ref|YP_514295.1| - 0.0023 17.9 0.0 0.0029 17.5 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|89256933|ref|YP_514295.1| - 0.0088 16.3 0.9 0.039 14.2 0.0 2.2 1 1 1 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|89256933|ref|YP_514295.1| - 0.0088 16.8 0.8 0.031 15.0 0.6 2.0 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|89256933|ref|YP_514295.1| - 0.0095 15.5 0.0 0.015 14.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|89256933|ref|YP_514295.1| - 0.015 15.2 0.0 0.028 14.2 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|89256933|ref|YP_514295.1| - 0.022 14.9 0.0 0.059 13.5 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|89256933|ref|YP_514295.1| - 0.022 14.6 0.3 0.08 12.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.7 gi|89256933|ref|YP_514295.1| - 0.026 13.6 0.1 0.084 11.9 0.0 1.8 1 1 0 1 1 1 0 Zeta toxin NAD_binding_3 PF03447.11 gi|89256933|ref|YP_514295.1| - 0.043 14.2 0.0 1.2 9.5 0.0 2.1 2 0 0 2 2 2 0 Homoserine dehydrogenase, NAD binding domain Nucleos_tra2_C PF07662.8 gi|89256934|ref|YP_514296.1| - 1e-63 214.5 7.9 1e-63 214.5 5.5 2.1 3 0 0 3 3 3 1 Na+ dependent nucleoside transporter C-terminus Nucleos_tra2_N PF01773.15 gi|89256934|ref|YP_514296.1| - 7.6e-20 71.0 4.8 7.6e-20 71.0 3.3 3.7 4 0 0 4 4 4 1 Na+ dependent nucleoside transporter N-terminus DUF3290 PF11694.3 gi|89256934|ref|YP_514296.1| - 1.4 8.6 9.4 0.09 12.5 2.4 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF3290) Nucleos_tra2_C PF07662.8 gi|89256935|ref|YP_514297.1| - 5.2e-61 205.7 9.8 5.2e-61 205.7 6.8 2.2 3 0 0 3 3 3 1 Na+ dependent nucleoside transporter C-terminus Nucleos_tra2_N PF01773.15 gi|89256935|ref|YP_514297.1| - 4.7e-22 78.1 3.2 4.7e-22 78.1 2.2 3.5 4 0 0 4 4 4 1 Na+ dependent nucleoside transporter N-terminus DUF3290 PF11694.3 gi|89256935|ref|YP_514297.1| - 0.0035 17.0 5.9 0.019 14.7 4.1 2.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3290) DeoC PF01791.4 gi|89256936|ref|YP_514298.1| - 5.8e-43 146.8 1.6 6.8e-43 146.6 1.1 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase EcoRII-C PF09019.6 gi|89256936|ref|YP_514298.1| - 0.044 13.6 0.0 0.074 12.8 0.0 1.3 1 0 0 1 1 1 0 EcoRII C terminal Metalloenzyme PF01676.13 gi|89256937|ref|YP_514299.1| - 1.9e-45 155.2 0.0 2.2e-45 155.0 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.17 gi|89256937|ref|YP_514299.1| - 1.4e-05 24.5 0.0 2.1e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.18 gi|89256937|ref|YP_514299.1| - 0.00029 20.1 0.1 0.00087 18.5 0.0 1.9 2 0 0 2 2 2 1 Sulfatase DUF1501 PF07394.7 gi|89256937|ref|YP_514299.1| - 0.17 10.7 0.0 0.25 10.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1501) Pan_kinase PF03309.9 gi|89256938|ref|YP_514300.1| - 2e-49 167.9 0.0 2.3e-49 167.7 0.0 1.0 1 0 0 1 1 1 1 Type III pantothenate kinase DUF4445 PF14574.1 gi|89256938|ref|YP_514300.1| - 0.0016 16.8 0.0 0.0022 16.2 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4445) DNA_pol_A PF00476.15 gi|89256939|ref|YP_514301.1| - 8.3e-141 469.0 3.7 1.2e-140 468.4 2.6 1.3 1 0 0 1 1 1 1 DNA polymerase family A 5_3_exonuc_N PF02739.11 gi|89256939|ref|YP_514301.1| - 4.3e-54 182.4 2.9 6.2e-54 181.8 0.6 2.4 2 0 0 2 2 2 1 5'-3' exonuclease, N-terminal resolvase-like domain DNA_pol_A_exo1 PF01612.15 gi|89256939|ref|YP_514301.1| - 4.5e-35 120.7 1.1 4.5e-35 120.7 0.8 2.9 3 0 0 3 3 3 1 3'-5' exonuclease 5_3_exonuc PF01367.15 gi|89256939|ref|YP_514301.1| - 1.9e-31 108.2 0.2 1.9e-31 108.2 0.1 3.4 3 1 1 4 4 4 1 5'-3' exonuclease, C-terminal SAM fold HHH_2 PF12826.2 gi|89256939|ref|YP_514301.1| - 0.047 13.5 0.0 0.37 10.7 0.0 2.4 2 0 0 2 2 2 0 Helix-hairpin-helix motif LpxK PF02606.9 gi|89256940|ref|YP_514302.1| - 2.9e-96 322.2 0.2 3.2e-96 322.0 0.1 1.0 1 0 0 1 1 1 1 Tetraacyldisaccharide-1-P 4'-kinase MobB PF03205.9 gi|89256940|ref|YP_514302.1| - 0.2 11.3 3.3 0.76 9.4 0.1 2.9 2 1 0 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B AcetDehyd-dimer PF09290.6 gi|89256940|ref|YP_514302.1| - 0.99 9.2 3.5 6.6 6.6 0.3 2.4 2 0 0 2 2 2 0 Prokaryotic acetaldehyde dehydrogenase, dimerisation ABC_membrane PF00664.18 gi|89256941|ref|YP_514303.1| - 1.8e-43 148.9 18.8 2.9e-43 148.2 13.1 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.22 gi|89256941|ref|YP_514303.1| - 5e-35 120.7 0.2 1.2e-34 119.5 0.1 1.7 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.14 gi|89256941|ref|YP_514303.1| - 7.2e-10 38.4 4.2 5.5e-09 35.5 2.9 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|89256941|ref|YP_514303.1| - 3.1e-06 27.3 2.2 2.3e-05 24.5 0.2 2.5 2 1 0 2 2 1 1 AAA domain AAA_16 PF13191.1 gi|89256941|ref|YP_514303.1| - 6.4e-05 23.0 0.1 0.00014 21.9 0.1 1.5 1 0 0 1 1 1 1 AAA ATPase domain DEAD PF00270.24 gi|89256941|ref|YP_514303.1| - 0.00084 18.8 0.1 0.0024 17.3 0.1 1.7 1 0 0 1 1 1 1 DEAD/DEAH box helicase DUF258 PF03193.11 gi|89256941|ref|YP_514303.1| - 0.0022 17.2 0.1 0.0042 16.2 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_30 PF13604.1 gi|89256941|ref|YP_514303.1| - 0.003 17.1 0.1 0.026 14.1 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|89256941|ref|YP_514303.1| - 0.0031 17.0 0.4 0.0079 15.6 0.3 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_ATPase PF09818.4 gi|89256941|ref|YP_514303.1| - 0.0061 15.2 2.1 0.0097 14.5 0.2 2.0 2 0 0 2 2 2 1 Predicted ATPase of the ABC class MobB PF03205.9 gi|89256941|ref|YP_514303.1| - 0.0064 16.1 0.1 0.015 14.9 0.0 1.7 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B T2SE PF00437.15 gi|89256941|ref|YP_514303.1| - 0.0081 15.0 0.1 0.015 14.1 0.1 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein SRP54 PF00448.17 gi|89256941|ref|YP_514303.1| - 0.011 15.1 0.1 0.046 13.1 0.0 1.9 1 1 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_17 PF13207.1 gi|89256941|ref|YP_514303.1| - 0.012 16.4 0.1 0.029 15.1 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|89256941|ref|YP_514303.1| - 0.012 15.7 1.2 0.12 12.5 0.8 2.3 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|89256941|ref|YP_514303.1| - 0.012 15.9 0.8 0.05 13.9 0.5 2.2 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|89256941|ref|YP_514303.1| - 0.018 14.4 0.7 0.23 10.8 0.6 2.6 2 1 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|89256941|ref|YP_514303.1| - 0.046 13.4 0.2 0.16 11.7 0.0 2.0 2 0 0 2 2 1 0 Part of AAA domain APS_kinase PF01583.15 gi|89256941|ref|YP_514303.1| - 0.058 13.0 0.1 0.12 12.0 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase NACHT PF05729.7 gi|89256941|ref|YP_514303.1| - 0.078 12.6 0.1 0.57 9.8 0.0 2.1 2 0 0 2 2 2 0 NACHT domain AAA PF00004.24 gi|89256941|ref|YP_514303.1| - 0.1 12.8 1.8 1.2 9.3 0.4 2.7 2 1 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.1 gi|89256941|ref|YP_514303.1| - 0.14 12.0 0.6 1.8 8.5 0.4 2.6 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit DUF87 PF01935.12 gi|89256941|ref|YP_514303.1| - 0.5 10.1 5.6 2 8.1 0.2 3.4 3 1 0 4 4 4 0 Domain of unknown function DUF87 AAA_33 PF13671.1 gi|89256941|ref|YP_514303.1| - 0.74 9.6 3.4 0.45 10.3 0.5 2.2 2 1 0 2 2 2 0 AAA domain PolyA_pol PF01743.15 gi|89256942|ref|YP_514304.1| - 8.3e-29 100.3 0.0 2e-28 99.1 0.0 1.7 1 0 0 1 1 1 1 Poly A polymerase head domain PolyA_pol_RNAbd PF12627.2 gi|89256942|ref|YP_514304.1| - 3.4e-09 36.1 1.2 8.2e-09 34.9 0.8 1.7 1 0 0 1 1 1 1 Probable RNA and SrmB- binding site of polymerase A DsbB PF02600.11 gi|89256943|ref|YP_514305.1| - 5.3e-24 84.7 11.7 5.9e-24 84.6 8.1 1.0 1 0 0 1 1 1 1 Disulfide bond formation protein DsbB Glycoprotein PF03409.10 gi|89256943|ref|YP_514305.1| - 0.05 12.3 1.2 0.065 11.9 0.8 1.1 1 0 0 1 1 1 0 Transmembrane glycoprotein DUF3937 PF13073.1 gi|89256943|ref|YP_514305.1| - 9.7 6.1 8.6 12 5.8 0.0 2.9 3 1 0 3 3 3 0 Protein of unknown function (DUF3937) HlyD_2 PF12700.2 gi|89256944|ref|YP_514306.1| - 1e-25 90.5 7.5 1.9e-25 89.7 5.2 1.5 1 1 0 1 1 1 1 HlyD family secretion protein HlyD_3 PF13437.1 gi|89256944|ref|YP_514306.1| - 1.1e-19 70.7 0.6 3.6e-16 59.3 0.1 2.8 2 0 0 2 2 2 2 HlyD family secretion protein HlyD PF00529.15 gi|89256944|ref|YP_514306.1| - 4.2e-16 59.1 3.1 1.6e-15 57.2 1.5 2.0 1 1 1 2 2 2 1 HlyD family secretion protein Biotin_lipoyl_2 PF13533.1 gi|89256944|ref|YP_514306.1| - 5.9e-13 48.2 0.1 1.3e-10 40.7 0.0 3.8 3 1 0 3 3 3 1 Biotin-lipoyl like Biotin_lipoyl PF00364.17 gi|89256944|ref|YP_514306.1| - 0.00012 21.6 0.0 0.00095 18.7 0.0 2.5 3 0 0 3 3 3 1 Biotin-requiring enzyme POTRA_1 PF08478.5 gi|89256944|ref|YP_514306.1| - 0.046 13.7 0.2 0.79 9.8 0.0 2.6 2 0 0 2 2 2 0 POTRA domain, FtsQ-type QRPTase_N PF02749.11 gi|89256944|ref|YP_514306.1| - 0.1 12.4 0.0 0.62 9.9 0.0 2.1 2 0 0 2 2 2 0 Quinolinate phosphoribosyl transferase, N-terminal domain DUF2244 PF10003.4 gi|89256944|ref|YP_514306.1| - 0.15 11.4 0.7 0.39 10.0 0.5 1.7 1 0 0 1 1 1 0 Integral membrane protein (DUF2244) OEP PF02321.13 gi|89256944|ref|YP_514306.1| - 1.8 8.1 9.0 0.75 9.3 4.1 1.9 2 0 0 2 2 2 0 Outer membrane efflux protein ACR_tran PF00873.14 gi|89256945|ref|YP_514307.1| - 1.6e-246 820.4 34.4 1.8e-246 820.2 23.8 1.0 1 0 0 1 1 1 1 AcrB/AcrD/AcrF family MMPL PF03176.10 gi|89256945|ref|YP_514307.1| - 1e-07 31.0 25.5 1.9e-07 30.1 6.2 2.6 2 1 0 2 2 2 2 MMPL family UPF0181 PF03701.9 gi|89256945|ref|YP_514307.1| - 1.7 8.0 5.2 0.36 10.1 0.1 2.5 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0181) MFS_1 PF07690.11 gi|89256946|ref|YP_514308.1| - 2.1e-31 108.9 45.0 2.1e-25 89.2 11.7 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Peptidase_S66 PF02016.10 gi|89256948|ref|YP_514310.1| - 5.6e-61 205.9 0.0 6.5e-61 205.7 0.0 1.0 1 0 0 1 1 1 1 LD-carboxypeptidase DDE_Tnp_IS1595 PF12762.2 gi|89256949|ref|YP_514311.1| - 2.5e-20 72.8 0.2 2.9e-20 72.6 0.1 1.1 1 0 0 1 1 1 1 ISXO2-like transposase domain DDE_Tnp_IS240 PF13610.1 gi|89256949|ref|YP_514311.1| - 0.082 12.8 0.0 0.11 12.4 0.0 1.1 1 0 0 1 1 1 0 DDE domain DDE_Tnp_1_2 PF13586.1 gi|89256950|ref|YP_514312.1| - 5.1e-16 58.6 0.2 1.4e-15 57.2 0.1 1.8 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|89256950|ref|YP_514312.1| - 2.8e-13 49.9 1.0 9.6e-13 48.1 0.7 1.7 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|89256950|ref|YP_514312.1| - 2.3e-09 37.1 0.1 3.3e-09 36.6 0.1 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF4096 PF13340.1 gi|89256950|ref|YP_514312.1| - 0.00062 19.5 0.0 0.0012 18.6 0.0 1.5 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) DDE_3 PF13358.1 gi|89256951|ref|YP_514313.1| - 1.7e-31 108.9 0.0 2.8e-31 108.2 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.11 gi|89256951|ref|YP_514313.1| - 1.5e-07 31.0 0.2 1.1e-06 28.3 0.1 2.1 2 0 0 2 2 2 1 Transposase DDE_1 PF03184.14 gi|89256951|ref|YP_514313.1| - 5.8e-07 28.8 0.1 9.5e-07 28.1 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_28 PF13518.1 gi|89256951|ref|YP_514313.1| - 0.00058 19.8 0.0 0.0018 18.2 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain rve PF00665.21 gi|89256951|ref|YP_514313.1| - 0.00072 19.6 0.0 0.0013 18.7 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.1 gi|89256951|ref|YP_514313.1| - 0.0087 15.6 0.0 0.029 14.0 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.1 gi|89256951|ref|YP_514313.1| - 0.02 15.0 0.0 0.032 14.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix DDE_Tnp_ISAZ013 PF07592.6 gi|89256951|ref|YP_514313.1| - 0.039 12.6 0.6 0.32 9.7 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain tRNA-synt_1e PF01406.14 gi|89256953|ref|YP_514315.1| - 6.5e-135 449.0 0.6 6.5e-135 449.0 0.4 1.4 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain DALR_2 PF09190.6 gi|89256953|ref|YP_514315.1| - 1.7e-22 79.4 0.0 1.7e-22 79.4 0.0 2.6 4 0 0 4 4 4 1 DALR domain tRNA-synt_1g PF09334.6 gi|89256953|ref|YP_514315.1| - 2.2e-18 66.1 4.2 9.6e-10 37.6 0.1 2.5 3 0 0 3 3 3 2 tRNA synthetases class I (M) tRNA-synt_1 PF00133.17 gi|89256953|ref|YP_514315.1| - 6.7e-07 27.6 0.0 6.4e-05 21.1 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1f PF01921.13 gi|89256953|ref|YP_514315.1| - 1.6e-06 27.0 0.4 0.0026 16.4 0.0 2.6 3 0 0 3 3 3 2 tRNA synthetases class I (K) tRNA-synt_1d PF00750.14 gi|89256953|ref|YP_514315.1| - 0.0021 16.9 0.1 0.063 12.0 0.0 2.4 1 1 1 2 2 2 1 tRNA synthetases class I (R) phage_tail_N PF08400.5 gi|89256953|ref|YP_514315.1| - 0.042 13.5 0.1 0.56 9.9 0.0 2.4 2 0 0 2 2 2 0 Prophage tail fibre N-terminal UVR PF02151.14 gi|89256953|ref|YP_514315.1| - 1.1 8.8 5.1 2.7 7.6 3.5 1.7 1 0 0 1 1 1 0 UvrB/uvrC motif MTS PF05175.9 gi|89256954|ref|YP_514316.1| - 1.6e-22 79.6 0.1 3e-22 78.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|89256954|ref|YP_514316.1| - 5.1e-18 65.2 0.0 8.4e-18 64.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|89256954|ref|YP_514316.1| - 2.6e-17 62.8 0.2 5.3e-17 61.8 0.1 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|89256954|ref|YP_514316.1| - 8.2e-13 48.9 0.1 1.4e-12 48.1 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|89256954|ref|YP_514316.1| - 3.1e-09 37.0 0.1 9.5e-09 35.5 0.0 1.8 1 1 1 2 2 2 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|89256954|ref|YP_514316.1| - 7.7e-09 35.1 0.0 1.7e-08 34.0 0.0 1.5 2 0 0 2 2 2 1 Conserved hypothetical protein 95 PrmA PF06325.8 gi|89256954|ref|YP_514316.1| - 5.8e-08 32.1 0.7 8.8e-08 31.6 0.5 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_15 PF09445.5 gi|89256954|ref|YP_514316.1| - 6.8e-07 28.9 0.0 1.1e-06 28.3 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_12 PF08242.7 gi|89256954|ref|YP_514316.1| - 2.8e-06 27.7 0.2 7.4e-06 26.3 0.1 1.7 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|89256954|ref|YP_514316.1| - 9.1e-06 25.3 0.0 1.8e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Met_10 PF02475.11 gi|89256954|ref|YP_514316.1| - 9.6e-06 25.3 0.0 1.7e-05 24.5 0.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_16 PF10294.4 gi|89256954|ref|YP_514316.1| - 2.1e-05 24.0 0.0 4.7e-05 22.9 0.0 1.5 1 0 0 1 1 1 1 Putative methyltransferase N6_Mtase PF02384.11 gi|89256954|ref|YP_514316.1| - 0.00043 19.4 0.0 0.00072 18.7 0.0 1.3 1 0 0 1 1 1 1 N-6 DNA Methylase Methyltransf_10 PF05971.7 gi|89256954|ref|YP_514316.1| - 0.00093 18.4 0.1 0.0014 17.8 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF890) Ubie_methyltran PF01209.13 gi|89256954|ref|YP_514316.1| - 0.0022 17.1 0.0 0.0044 16.1 0.0 1.5 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_11 PF08241.7 gi|89256954|ref|YP_514316.1| - 0.0025 18.2 0.0 0.0063 16.9 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain DUF633 PF04816.7 gi|89256954|ref|YP_514316.1| - 0.014 14.7 0.1 0.033 13.5 0.1 1.6 1 0 0 1 1 1 0 Family of unknown function (DUF633) GidB PF02527.10 gi|89256954|ref|YP_514316.1| - 0.021 13.9 0.0 0.037 13.1 0.0 1.3 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G CMAS PF02353.15 gi|89256954|ref|YP_514316.1| - 0.033 13.2 0.0 0.046 12.7 0.0 1.3 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Eco57I PF07669.6 gi|89256954|ref|YP_514316.1| - 0.044 14.1 0.0 0.12 12.7 0.0 1.8 1 0 0 1 1 1 0 Eco57I restriction-modification methylase Methyltransf_3 PF01596.12 gi|89256954|ref|YP_514316.1| - 0.11 11.5 0.0 0.17 10.9 0.0 1.3 1 0 0 1 1 1 0 O-methyltransferase PCMT PF01135.14 gi|89256954|ref|YP_514316.1| - 0.12 11.8 0.0 0.22 11.0 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 3HCDH_N PF02737.13 gi|89256954|ref|YP_514316.1| - 0.17 11.5 0.0 0.28 10.8 0.0 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain MFS_1 PF07690.11 gi|89256955|ref|YP_514317.1| - 1.7e-35 122.4 37.5 2.3e-35 121.9 25.1 1.7 1 1 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|89256955|ref|YP_514317.1| - 4.2e-12 45.3 11.4 4.2e-12 45.3 7.9 3.9 1 1 0 2 2 2 1 Sugar (and other) transporter MFS_2 PF13347.1 gi|89256955|ref|YP_514317.1| - 2e-11 42.9 34.2 5.3e-06 25.0 4.0 2.6 1 1 2 3 3 3 3 MFS/sugar transport protein TRI12 PF06609.8 gi|89256955|ref|YP_514317.1| - 1.8e-05 23.2 4.7 1.8e-05 23.2 3.3 1.7 1 1 0 2 2 2 1 Fungal trichothecene efflux pump (TRI12) Acetyltransf_1 PF00583.19 gi|89256956|ref|YP_514318.1| - 3.4e-13 49.4 0.0 4.8e-13 48.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.1 gi|89256956|ref|YP_514318.1| - 1.2e-11 44.8 0.3 1.4e-11 44.5 0.2 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|89256956|ref|YP_514318.1| - 5e-10 39.4 0.0 7.2e-10 38.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|89256956|ref|YP_514318.1| - 3.8e-07 30.3 0.0 4.6e-07 30.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|89256956|ref|YP_514318.1| - 6.8e-07 29.4 0.0 8.1e-07 29.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|89256956|ref|YP_514318.1| - 8e-06 25.5 0.0 1.3e-05 24.8 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.1 gi|89256956|ref|YP_514318.1| - 0.0008 19.3 0.0 0.00085 19.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|89256956|ref|YP_514318.1| - 0.0069 16.2 0.0 0.01 15.6 0.0 1.3 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.1 gi|89256956|ref|YP_514318.1| - 0.055 13.3 0.0 0.069 13.0 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DDE_3 PF13358.1 gi|89256957|ref|YP_514319.1| - 1.7e-31 108.9 0.0 2.8e-31 108.2 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.11 gi|89256957|ref|YP_514319.1| - 1.5e-07 31.0 0.2 1.1e-06 28.3 0.1 2.1 2 0 0 2 2 2 1 Transposase DDE_1 PF03184.14 gi|89256957|ref|YP_514319.1| - 5.8e-07 28.8 0.1 9.5e-07 28.1 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_28 PF13518.1 gi|89256957|ref|YP_514319.1| - 0.00058 19.8 0.0 0.0018 18.2 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain rve PF00665.21 gi|89256957|ref|YP_514319.1| - 0.00072 19.6 0.0 0.0013 18.7 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.1 gi|89256957|ref|YP_514319.1| - 0.0087 15.6 0.0 0.029 14.0 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.1 gi|89256957|ref|YP_514319.1| - 0.02 15.0 0.0 0.032 14.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix DDE_Tnp_ISAZ013 PF07592.6 gi|89256957|ref|YP_514319.1| - 0.039 12.6 0.6 0.32 9.7 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain N_methyl_2 PF13544.1 gi|89256959|ref|YP_514321.1| - 0.0022 17.3 1.2 0.0041 16.5 0.8 1.5 1 0 0 1 1 1 1 Type IV pilin N-term methylation site GFxxxE N_methyl_2 PF13544.1 gi|89256961|ref|YP_514323.1| - 2.3e-06 26.7 0.2 5.3e-06 25.6 0.1 1.6 1 0 0 1 1 1 1 Type IV pilin N-term methylation site GFxxxE N_methyl PF07963.7 gi|89256961|ref|YP_514323.1| - 2.5 8.0 9.9 0.11 12.2 2.0 2.5 2 1 0 2 2 2 0 Prokaryotic N-terminal methylation motif N_methyl_2 PF13544.1 gi|89256964|ref|YP_514326.1| - 6.3e-08 31.7 0.1 1.2e-07 30.8 0.1 1.5 1 0 0 1 1 1 1 Type IV pilin N-term methylation site GFxxxE N_methyl PF07963.7 gi|89256964|ref|YP_514326.1| - 1.8e-05 24.2 2.2 3e-05 23.5 1.5 1.4 1 0 0 1 1 1 1 Prokaryotic N-terminal methylation motif N_methyl_3 PF13633.1 gi|89256964|ref|YP_514326.1| - 0.018 14.8 7.2 0.03 14.1 5.0 1.4 1 0 0 1 1 1 0 Prokaryotic N-terminal methylation site Bundlin PF05307.6 gi|89256964|ref|YP_514326.1| - 3 7.7 7.6 30 4.5 2.8 2.8 2 1 0 2 2 2 0 Bundlin N_methyl_2 PF13544.1 gi|89256965|ref|YP_514327.1| - 0.0007 18.9 0.3 0.0011 18.3 0.2 1.4 1 0 0 1 1 1 1 Type IV pilin N-term methylation site GFxxxE CBS PF00571.23 gi|89256966|ref|YP_514328.1| - 3.5e-06 26.6 0.0 1.4e-05 24.8 0.0 2.0 2 0 0 2 2 2 1 CBS domain CorC_HlyC PF03471.12 gi|89256966|ref|YP_514328.1| - 0.0069 16.1 0.0 0.0095 15.6 0.0 1.3 1 0 0 1 1 1 1 Transporter associated domain DUF21 PF01595.15 gi|89256967|ref|YP_514329.1| - 5.3e-21 74.7 2.0 6.5e-21 74.4 1.4 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF21 Bac_rhodopsin PF01036.13 gi|89256967|ref|YP_514329.1| - 0.0009 18.6 2.2 0.0011 18.3 1.5 1.1 1 0 0 1 1 1 1 Bacteriorhodopsin-like protein YqhR PF11085.3 gi|89256967|ref|YP_514329.1| - 0.16 11.5 2.4 0.18 11.2 1.7 1.1 1 0 0 1 1 1 0 Conserved membrane protein YqhR Glyco_tranf_2_3 PF13641.1 gi|89256968|ref|YP_514330.1| - 1.2e-21 77.6 0.0 1.5e-21 77.2 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|89256968|ref|YP_514330.1| - 1.2e-13 51.2 1.2 1.2e-13 51.2 0.8 2.8 3 1 0 3 3 3 1 Glycosyl transferase family group 2 Glycos_transf_2 PF00535.21 gi|89256968|ref|YP_514330.1| - 3.4e-10 39.8 0.1 5.6e-10 39.1 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.1 gi|89256968|ref|YP_514330.1| - 4.3e-07 29.3 0.0 6.6e-07 28.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 SSF PF00474.12 gi|89256969|ref|YP_514331.1| - 3.6e-90 302.5 32.7 5.2e-90 302.0 22.6 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family 4HB_MCP_1 PF12729.2 gi|89256969|ref|YP_514331.1| - 1.2 8.4 6.1 0.31 10.3 1.2 2.2 2 0 0 2 2 2 0 Four helix bundle sensory module for signal transduction FBPase_glpX PF03320.8 gi|89256970|ref|YP_514332.1| - 9.4e-136 451.4 12.1 1.1e-135 451.2 8.4 1.0 1 0 0 1 1 1 1 Bacterial fructose-1,6-bisphosphatase, glpX-encoded ADH_zinc_N PF00107.21 gi|89256970|ref|YP_514332.1| - 0.012 15.1 0.6 0.092 12.2 0.1 2.6 2 1 1 3 3 3 0 Zinc-binding dehydrogenase CoA_binding_2 PF13380.1 gi|89256970|ref|YP_514332.1| - 0.073 13.2 0.2 0.25 11.5 0.0 1.9 2 0 0 2 2 2 0 CoA binding domain Abhydrolase_5 PF12695.2 gi|89256971|ref|YP_514333.1| - 1.6e-12 47.4 0.0 2e-12 47.0 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|89256971|ref|YP_514333.1| - 5.7e-09 36.1 0.0 3.6e-06 27.0 0.0 2.1 1 1 1 2 2 2 2 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|89256971|ref|YP_514333.1| - 3.8e-07 29.8 1.6 0.01 15.3 0.1 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_2 PF02230.11 gi|89256971|ref|YP_514333.1| - 5.5e-05 22.7 0.0 6.6e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 Phospholipase/Carboxylesterase DLH PF01738.13 gi|89256971|ref|YP_514333.1| - 0.0022 17.2 0.0 0.0041 16.4 0.0 1.4 1 0 0 1 1 1 1 Dienelactone hydrolase family Peptidase_S9 PF00326.16 gi|89256971|ref|YP_514333.1| - 0.004 16.3 0.2 2.1 7.5 0.0 2.2 1 1 1 2 2 2 2 Prolyl oligopeptidase family Abhydrolase_3 PF07859.8 gi|89256971|ref|YP_514333.1| - 0.013 15.1 0.0 0.027 14.0 0.0 1.4 1 1 0 1 1 1 0 alpha/beta hydrolase fold BAAT_C PF08840.6 gi|89256971|ref|YP_514333.1| - 0.029 14.0 0.0 0.057 13.1 0.0 1.4 1 1 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal Hydrolase_4 PF12146.3 gi|89256971|ref|YP_514333.1| - 0.034 14.0 0.2 0.089 12.6 0.1 1.8 1 1 1 2 2 2 0 Putative lysophospholipase PAF-AH_p_II PF03403.8 gi|89256971|ref|YP_514333.1| - 0.12 10.5 0.2 0.84 7.8 0.0 1.9 2 0 0 2 2 2 0 Platelet-activating factor acetylhydrolase, isoform II AA_permease PF00324.16 gi|89256972|ref|YP_514334.1| - 3.2e-117 391.7 60.3 3.8e-117 391.5 41.8 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.1 gi|89256972|ref|YP_514334.1| - 9.9e-43 146.2 66.2 1.4e-42 145.7 45.9 1.2 1 0 0 1 1 1 1 Amino acid permease PAP2 PF01569.16 gi|89256973|ref|YP_514335.1| - 1.6e-18 66.6 2.1 1.6e-18 66.6 1.5 2.4 2 1 0 2 2 2 1 PAP2 superfamily SPW PF03779.9 gi|89256973|ref|YP_514335.1| - 0.09 12.1 3.7 5.2 6.5 0.3 2.8 2 0 0 2 2 2 0 SPW repeat DUF2101 PF09874.4 gi|89256973|ref|YP_514335.1| - 8.6 5.7 9.5 19 4.6 6.6 1.6 1 1 0 1 1 1 0 Predicted membrane protein (DUF2101) FtsK_SpoIIIE PF01580.13 gi|89256974|ref|YP_514336.1| - 2.8e-61 206.5 0.2 4.4e-61 205.9 0.2 1.3 1 0 0 1 1 1 1 FtsK/SpoIIIE family DUF4117 PF13491.1 gi|89256974|ref|YP_514336.1| - 1e-30 106.4 12.2 1.5e-30 105.8 8.4 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4117) Ftsk_gamma PF09397.5 gi|89256974|ref|YP_514336.1| - 3.9e-30 103.3 0.7 8.5e-30 102.2 0.5 1.6 1 0 0 1 1 1 1 Ftsk gamma domain AAA_10 PF12846.2 gi|89256974|ref|YP_514336.1| - 7.6e-08 32.1 0.4 0.011 15.1 0.0 2.3 2 0 0 2 2 2 2 AAA-like domain DUF87 PF01935.12 gi|89256974|ref|YP_514336.1| - 0.0018 18.1 0.8 0.0069 16.2 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function DUF87 T2SE PF00437.15 gi|89256974|ref|YP_514336.1| - 0.011 14.5 0.0 0.026 13.4 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein TrwB_AAD_bind PF10412.4 gi|89256974|ref|YP_514336.1| - 0.018 13.6 0.0 0.055 12.0 0.0 1.7 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain AAA_29 PF13555.1 gi|89256974|ref|YP_514336.1| - 0.084 12.4 0.0 0.19 11.2 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF2870 PF11069.3 gi|89256974|ref|YP_514336.1| - 0.21 11.6 1.3 0.88 9.6 0.4 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2870) LolA PF03548.10 gi|89256975|ref|YP_514337.1| - 1.1e-32 112.8 11.1 1.4e-32 112.6 7.7 1.1 1 0 0 1 1 1 1 Outer membrane lipoprotein carrier protein LolA FadA PF09403.5 gi|89256975|ref|YP_514337.1| - 0.023 14.7 0.1 0.061 13.3 0.0 1.8 1 0 0 1 1 1 0 Adhesion protein FadA DUF2092 PF09865.4 gi|89256975|ref|YP_514337.1| - 0.07 12.1 1.2 6.4 5.7 0.1 2.4 3 0 0 3 3 3 0 Predicted periplasmic protein (DUF2092) DUF3460 PF11943.3 gi|89256976|ref|YP_514338.1| - 0.0004 20.4 0.2 0.0006 19.8 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3460) DNA_ligase_A_N PF04675.9 gi|89256976|ref|YP_514338.1| - 0.05 13.4 0.1 0.052 13.3 0.1 1.1 1 0 0 1 1 1 0 DNA ligase N terminus Complex1_LYR PF05347.10 gi|89256976|ref|YP_514338.1| - 0.18 11.6 0.9 0.23 11.2 0.6 1.2 1 0 0 1 1 1 0 Complex 1 protein (LYR family) TrkH PF02386.11 gi|89256977|ref|YP_514339.1| - 2.7e-43 147.8 27.8 1.1e-42 145.9 13.2 2.3 2 0 0 2 2 2 2 Cation transport protein ProQ PF04352.8 gi|89256979|ref|YP_514341.1| - 3.9e-30 103.8 0.1 7.3e-30 102.9 0.1 1.4 1 0 0 1 1 1 1 ProQ/FINO family DUF3387 PF11867.3 gi|89256980|ref|YP_514342.1| - 1.2e-70 238.0 14.7 1.4e-70 237.9 10.2 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF3387) Glyco_hydro_44 PF12891.2 gi|89256980|ref|YP_514342.1| - 1.2e-05 24.9 0.0 1.7e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 Glycoside hydrolase family 44 DUF1700 PF08006.6 gi|89256980|ref|YP_514342.1| - 0.025 13.8 0.4 0.04 13.2 0.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1700) TrmB PF01978.14 gi|89256980|ref|YP_514342.1| - 0.055 13.1 0.3 0.15 11.7 0.2 1.9 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB NusB PF01029.13 gi|89256980|ref|YP_514342.1| - 0.43 10.5 4.7 0.55 10.2 1.6 2.0 1 1 0 2 2 2 0 NusB family FliL PF03748.9 gi|89256980|ref|YP_514342.1| - 1.1 9.3 5.7 1.9 8.5 0.1 2.6 2 1 0 2 2 2 0 Flagellar basal body-associated protein FliL DUF445 PF04286.7 gi|89256980|ref|YP_514342.1| - 5.8 6.3 9.8 26 4.1 6.8 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF445) HSDR_N PF04313.9 gi|89256981|ref|YP_514343.1| - 1.4e-22 80.3 0.3 3.1e-22 79.2 0.1 1.6 2 0 0 2 2 2 1 Type I restriction enzyme R protein N terminus (HSDR_N) ResIII PF04851.10 gi|89256981|ref|YP_514343.1| - 2.3e-08 34.0 0.0 5.9e-08 32.7 0.0 1.6 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit PDDEXK_4 PF14281.1 gi|89256981|ref|YP_514343.1| - 0.0029 17.4 0.0 0.0056 16.5 0.0 1.5 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily DDE_3 PF13358.1 gi|89256982|ref|YP_514344.1| - 1.7e-31 108.9 0.0 2.8e-31 108.2 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.11 gi|89256982|ref|YP_514344.1| - 1.5e-07 31.0 0.2 1.1e-06 28.3 0.1 2.1 2 0 0 2 2 2 1 Transposase DDE_1 PF03184.14 gi|89256982|ref|YP_514344.1| - 5.8e-07 28.8 0.1 9.5e-07 28.1 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_28 PF13518.1 gi|89256982|ref|YP_514344.1| - 0.00058 19.8 0.0 0.0018 18.2 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain rve PF00665.21 gi|89256982|ref|YP_514344.1| - 0.00072 19.6 0.0 0.0013 18.7 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.1 gi|89256982|ref|YP_514344.1| - 0.0087 15.6 0.0 0.029 14.0 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.1 gi|89256982|ref|YP_514344.1| - 0.02 15.0 0.0 0.032 14.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix DDE_Tnp_ISAZ013 PF07592.6 gi|89256982|ref|YP_514344.1| - 0.039 12.6 0.6 0.32 9.7 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain Cpn60_TCP1 PF00118.19 gi|89256983|ref|YP_514345.1| - 2.5e-131 438.6 13.3 2.8e-131 438.4 9.2 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family CRS1_YhbY PF01985.16 gi|89256983|ref|YP_514345.1| - 0.0054 16.7 0.5 3.3 7.7 0.0 3.2 2 0 0 2 2 2 2 CRS1 / YhbY (CRM) domain DUF2088 PF09861.4 gi|89256983|ref|YP_514345.1| - 0.011 14.7 0.1 0.06 12.3 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF2088) Cpn10 PF00166.16 gi|89256984|ref|YP_514346.1| - 1.5e-34 117.8 0.7 1.6e-34 117.6 0.5 1.0 1 0 0 1 1 1 1 Chaperonin 10 Kd subunit BTP PF05232.7 gi|89256985|ref|YP_514347.1| - 1.4e-40 136.8 27.3 8.4e-22 76.6 6.5 2.0 2 0 0 2 2 2 2 Bacterial Transmembrane Pair family DUF1761 PF08570.5 gi|89256985|ref|YP_514347.1| - 8.2 6.4 15.3 4.3 7.3 1.5 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1761) DUF328 PF03883.9 gi|89256986|ref|YP_514348.1| - 3.1e-83 278.6 4.6 3.5e-83 278.5 3.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF328) RNA_pol_Rpb8 PF03870.10 gi|89256986|ref|YP_514348.1| - 0.017 15.2 0.4 0.11 12.6 0.1 2.1 1 1 1 2 2 2 0 RNA polymerase Rpb8 DDE_3 PF13358.1 gi|89256987|ref|YP_514349.1| - 1.7e-31 108.9 0.0 2.8e-31 108.2 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.11 gi|89256987|ref|YP_514349.1| - 1.5e-07 31.0 0.2 1.1e-06 28.3 0.1 2.1 2 0 0 2 2 2 1 Transposase DDE_1 PF03184.14 gi|89256987|ref|YP_514349.1| - 5.8e-07 28.8 0.1 9.5e-07 28.1 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_28 PF13518.1 gi|89256987|ref|YP_514349.1| - 0.00058 19.8 0.0 0.0018 18.2 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain rve PF00665.21 gi|89256987|ref|YP_514349.1| - 0.00072 19.6 0.0 0.0013 18.7 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.1 gi|89256987|ref|YP_514349.1| - 0.0087 15.6 0.0 0.029 14.0 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.1 gi|89256987|ref|YP_514349.1| - 0.02 15.0 0.0 0.032 14.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix DDE_Tnp_ISAZ013 PF07592.6 gi|89256987|ref|YP_514349.1| - 0.039 12.6 0.6 0.32 9.7 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain SPOUT_MTase PF02590.12 gi|89256988|ref|YP_514350.1| - 2e-43 147.7 0.0 2.4e-43 147.5 0.0 1.0 1 0 0 1 1 1 1 Predicted SPOUT methyltransferase Methyltransf_31 PF13847.1 gi|89256989|ref|YP_514351.1| - 5.4e-23 81.2 0.9 5.4e-23 81.2 0.6 1.7 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.9 gi|89256989|ref|YP_514351.1| - 5.5e-22 77.9 0.2 9.9e-22 77.1 0.2 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_18 PF12847.2 gi|89256989|ref|YP_514351.1| - 5.8e-16 59.0 0.1 1.2e-15 57.9 0.1 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|89256989|ref|YP_514351.1| - 1.4e-15 57.3 0.0 2.3e-15 56.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|89256989|ref|YP_514351.1| - 2.2e-12 46.6 2.8 3.6e-12 45.9 1.9 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.1 gi|89256989|ref|YP_514351.1| - 1.7e-09 37.9 0.0 4.2e-09 36.6 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|89256989|ref|YP_514351.1| - 8.3e-09 35.8 0.0 1.8e-08 34.7 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|89256989|ref|YP_514351.1| - 2.6e-08 33.6 0.1 5.3e-08 32.6 0.1 1.5 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_16 PF10294.4 gi|89256989|ref|YP_514351.1| - 6.9e-08 32.1 0.1 1.2e-07 31.3 0.1 1.4 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_12 PF08242.7 gi|89256989|ref|YP_514351.1| - 3.5e-07 30.6 1.1 1.3e-06 28.8 0.1 2.4 2 1 1 3 3 2 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|89256989|ref|YP_514351.1| - 5.5e-07 28.9 0.3 1.1e-06 28.0 0.2 1.4 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family tRNA_U5-meth_tr PF05958.6 gi|89256989|ref|YP_514351.1| - 1e-06 27.7 0.2 1.5e-06 27.1 0.1 1.3 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase Methyltransf_4 PF02390.12 gi|89256989|ref|YP_514351.1| - 1.2e-06 27.7 0.0 3e-06 26.4 0.0 1.6 1 0 0 1 1 1 1 Putative methyltransferase Cons_hypoth95 PF03602.10 gi|89256989|ref|YP_514351.1| - 6.9e-06 25.5 0.0 1.4e-05 24.5 0.0 1.5 2 0 0 2 2 1 1 Conserved hypothetical protein 95 Methyltransf_32 PF13679.1 gi|89256989|ref|YP_514351.1| - 8.6e-06 25.4 0.1 1.8e-05 24.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|89256989|ref|YP_514351.1| - 2.8e-05 23.9 0.0 0.00033 20.4 0.0 2.2 2 1 0 2 2 2 1 Methyltransferase domain RrnaAD PF00398.15 gi|89256989|ref|YP_514351.1| - 4.8e-05 22.5 0.1 8.7e-05 21.6 0.0 1.4 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase CMAS PF02353.15 gi|89256989|ref|YP_514351.1| - 5.1e-05 22.4 0.0 6.8e-05 22.0 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PCMT PF01135.14 gi|89256989|ref|YP_514351.1| - 8.5e-05 22.1 0.0 0.00013 21.5 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_10 PF05971.7 gi|89256989|ref|YP_514351.1| - 9.9e-05 21.6 0.1 0.00015 21.0 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF890) GidB PF02527.10 gi|89256989|ref|YP_514351.1| - 0.0001 21.5 0.0 0.00059 19.0 0.0 1.9 2 0 0 2 2 2 1 rRNA small subunit methyltransferase G Methyltransf_15 PF09445.5 gi|89256989|ref|YP_514351.1| - 0.00051 19.6 0.0 0.0012 18.4 0.0 1.6 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase TehB PF03848.9 gi|89256989|ref|YP_514351.1| - 0.0013 17.8 0.3 0.0024 17.0 0.2 1.4 1 0 0 1 1 1 1 Tellurite resistance protein TehB DUF938 PF06080.7 gi|89256989|ref|YP_514351.1| - 0.0019 17.7 0.0 0.003 17.1 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF938) TRM PF02005.11 gi|89256989|ref|YP_514351.1| - 0.0036 16.2 0.1 0.0045 15.9 0.0 1.2 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Met_10 PF02475.11 gi|89256989|ref|YP_514351.1| - 0.0058 16.2 0.2 0.016 14.8 0.1 1.6 1 1 1 2 2 2 1 Met-10+ like-protein N6_Mtase PF02384.11 gi|89256989|ref|YP_514351.1| - 0.007 15.4 0.1 0.011 14.8 0.1 1.2 1 0 0 1 1 1 1 N-6 DNA Methylase DOT1 PF08123.8 gi|89256989|ref|YP_514351.1| - 0.011 15.0 0.2 0.024 13.9 0.0 1.6 2 0 0 2 2 2 0 Histone methylation protein DOT1 Eco57I PF07669.6 gi|89256989|ref|YP_514351.1| - 0.014 15.6 2.5 0.038 14.3 0.1 2.7 3 2 0 3 3 3 0 Eco57I restriction-modification methylase Methyltransf_8 PF05148.10 gi|89256989|ref|YP_514351.1| - 0.015 14.9 0.2 0.088 12.4 0.0 2.2 2 1 1 3 3 2 0 Hypothetical methyltransferase FtsJ PF01728.14 gi|89256989|ref|YP_514351.1| - 0.015 15.2 0.3 0.037 13.9 0.1 1.8 1 1 1 2 2 2 0 FtsJ-like methyltransferase Methyltrans_SAM PF10672.4 gi|89256989|ref|YP_514351.1| - 0.03 13.1 0.0 0.054 12.3 0.0 1.3 1 0 0 1 1 1 0 S-adenosylmethionine-dependent methyltransferase Pentapeptide_4 PF13599.1 gi|89256989|ref|YP_514351.1| - 0.23 11.2 3.0 1.7 8.4 0.2 3.0 3 0 0 3 3 3 0 Pentapeptide repeats (9 copies) RF-1 PF00472.15 gi|89256990|ref|YP_514352.1| - 1.2e-42 144.2 1.1 1.2e-42 144.2 0.8 2.2 2 0 0 2 2 2 1 RF-1 domain PCRF PF03462.13 gi|89256990|ref|YP_514352.1| - 3.1e-39 133.2 0.6 3.1e-39 133.2 0.4 2.2 2 0 0 2 2 2 1 PCRF domain Mnd1 PF03962.10 gi|89256990|ref|YP_514352.1| - 1.6 8.3 8.9 1.2 8.7 2.4 2.2 2 0 0 2 2 2 0 Mnd1 family Spc7 PF08317.6 gi|89256990|ref|YP_514352.1| - 8.2 4.9 11.7 0.25 9.9 3.0 2.2 3 0 0 3 3 3 0 Spc7 kinetochore protein GlutR_N PF05201.10 gi|89256991|ref|YP_514353.1| - 2.6e-45 153.7 0.0 7.4e-45 152.2 0.0 1.8 2 0 0 2 2 2 1 Glutamyl-tRNAGlu reductase, N-terminal domain Shikimate_DH PF01488.15 gi|89256991|ref|YP_514353.1| - 9.1e-29 100.2 1.0 2.6e-28 98.8 0.1 2.0 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase GlutR_dimer PF00745.15 gi|89256991|ref|YP_514353.1| - 3.4e-18 65.4 0.2 6.5e-18 64.5 0.1 1.5 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain F420_oxidored PF03807.12 gi|89256991|ref|YP_514353.1| - 1.4e-05 25.4 1.0 2.9e-05 24.3 0.1 2.0 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|89256991|ref|YP_514353.1| - 9.2e-05 21.6 0.2 0.00021 20.5 0.0 1.6 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain THF_DHG_CYH_C PF02882.14 gi|89256991|ref|YP_514353.1| - 0.0014 17.7 0.2 0.0045 16.0 0.1 1.8 1 1 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Saccharop_dh PF03435.13 gi|89256991|ref|YP_514353.1| - 0.0014 17.6 0.1 0.0024 16.8 0.1 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase OCD_Mu_crystall PF02423.10 gi|89256991|ref|YP_514353.1| - 0.0048 15.7 0.2 0.0076 15.0 0.1 1.2 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family NAD_binding_7 PF13241.1 gi|89256991|ref|YP_514353.1| - 0.0059 16.8 0.0 0.021 15.0 0.0 1.9 1 0 0 1 1 1 1 Putative NAD(P)-binding NAD_binding_2 PF03446.10 gi|89256991|ref|YP_514353.1| - 0.02 14.7 0.2 0.16 11.7 0.0 2.2 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase TrkA_N PF02254.13 gi|89256991|ref|YP_514353.1| - 0.091 12.7 1.0 0.18 11.8 0.1 2.0 2 0 0 2 2 2 0 TrkA-N domain TPR_21 PF09976.4 gi|89256992|ref|YP_514354.1| - 1.4e-19 70.5 0.4 2.6e-18 66.3 0.3 2.1 1 1 0 1 1 1 1 Tetratricopeptide repeat TPR_6 PF13174.1 gi|89256992|ref|YP_514354.1| - 2.3e-10 40.2 1.9 0.18 12.3 0.0 5.0 4 1 0 4 4 4 3 Tetratricopeptide repeat TPR_2 PF07719.12 gi|89256992|ref|YP_514354.1| - 2.4e-08 33.2 0.4 0.0023 17.7 0.0 4.3 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_19 PF14559.1 gi|89256992|ref|YP_514354.1| - 3.2e-08 33.8 2.2 1.6e-05 25.1 0.1 2.8 2 2 1 3 3 3 2 Tetratricopeptide repeat TPR_11 PF13414.1 gi|89256992|ref|YP_514354.1| - 1.4e-07 31.0 1.1 0.00016 21.2 0.0 3.1 2 1 1 3 3 3 2 TPR repeat TPR_1 PF00515.23 gi|89256992|ref|YP_514354.1| - 2.1e-07 30.2 3.3 0.0011 18.4 0.1 4.1 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_14 PF13428.1 gi|89256992|ref|YP_514354.1| - 8.9e-07 29.0 0.1 0.023 15.3 0.0 3.7 3 1 1 4 4 3 2 Tetratricopeptide repeat TPR_8 PF13181.1 gi|89256992|ref|YP_514354.1| - 1.2e-05 24.6 3.1 0.0023 17.5 0.2 3.7 3 1 1 4 4 4 1 Tetratricopeptide repeat TPR_16 PF13432.1 gi|89256992|ref|YP_514354.1| - 1.5e-05 25.5 0.0 0.00047 20.7 0.0 2.6 3 0 0 3 3 2 1 Tetratricopeptide repeat TPR_17 PF13431.1 gi|89256992|ref|YP_514354.1| - 9.2e-05 22.3 1.9 0.41 10.9 0.0 3.7 4 1 0 4 4 3 2 Tetratricopeptide repeat Apc3 PF12895.2 gi|89256992|ref|YP_514354.1| - 0.001 19.1 0.1 0.0068 16.5 0.0 2.3 2 0 0 2 2 2 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_12 PF13424.1 gi|89256992|ref|YP_514354.1| - 0.0098 15.8 0.4 0.48 10.3 0.0 3.2 2 1 1 3 3 3 1 Tetratricopeptide repeat TPR_7 PF13176.1 gi|89256992|ref|YP_514354.1| - 0.023 14.4 0.1 3.9 7.5 0.0 3.8 5 0 0 5 5 4 0 Tetratricopeptide repeat TPR_15 PF13429.1 gi|89256992|ref|YP_514354.1| - 0.064 12.2 0.1 0.23 10.4 0.1 1.8 1 1 1 2 2 2 0 Tetratricopeptide repeat TPR_20 PF14561.1 gi|89256992|ref|YP_514354.1| - 0.1 12.7 0.1 0.3 11.2 0.1 1.8 1 1 0 1 1 1 0 Tetratricopeptide repeat XhlA PF10779.4 gi|89256992|ref|YP_514354.1| - 7.1 6.6 9.4 6.4 6.7 0.3 3.3 4 0 0 4 4 4 0 Haemolysin XhlA PQQ_2 PF13360.1 gi|89256993|ref|YP_514355.1| - 4.4e-54 183.4 1.8 1.7e-42 145.5 0.0 3.1 1 1 2 3 3 3 3 PQQ-like domain PQQ_3 PF13570.1 gi|89256993|ref|YP_514355.1| - 7.3e-27 92.8 4.6 2e-07 31.0 0.0 7.6 8 0 0 8 8 8 5 PQQ-like domain PQQ PF01011.16 gi|89256993|ref|YP_514355.1| - 2e-26 90.1 12.6 0.00043 19.6 0.0 8.2 8 0 0 8 8 8 5 PQQ enzyme repeat DUF4357 PF14267.1 gi|89256993|ref|YP_514355.1| - 0.38 10.3 2.0 2.3 7.8 0.0 3.2 3 0 0 3 3 3 0 Domain of unknown function (DUF4357) MFS_1 PF07690.11 gi|89256994|ref|YP_514356.1| - 8.8e-37 126.6 38.3 8.8e-37 126.6 26.5 1.6 1 1 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|89256994|ref|YP_514356.1| - 2.9e-12 45.9 14.3 2.9e-12 45.9 9.9 2.1 1 1 1 2 2 2 1 Sugar (and other) transporter TRI12 PF06609.8 gi|89256994|ref|YP_514356.1| - 2.6e-07 29.2 5.1 2.6e-07 29.2 3.5 2.3 2 1 0 2 2 2 1 Fungal trichothecene efflux pump (TRI12) MFS_3 PF05977.8 gi|89256994|ref|YP_514356.1| - 0.0096 14.0 14.8 0.0052 14.9 9.0 1.5 1 1 0 1 1 1 1 Transmembrane secretion effector NDUF_B12 PF08122.7 gi|89256994|ref|YP_514356.1| - 1.6 8.5 5.3 0.55 10.0 0.1 2.5 2 0 0 2 2 2 0 NADH-ubiquinone oxidoreductase B12 subunit family DNA_gyraseB PF00204.20 gi|89256995|ref|YP_514357.1| - 7.2e-44 149.0 3.1 9.6e-44 148.6 0.3 2.2 2 0 0 2 2 2 1 DNA gyrase B Toprim PF01751.17 gi|89256995|ref|YP_514357.1| - 1.9e-22 79.0 0.6 5.5e-22 77.6 0.0 2.1 2 0 0 2 2 2 1 Toprim domain DNA_gyraseB_C PF00986.16 gi|89256995|ref|YP_514357.1| - 4.1e-22 77.7 0.4 7.9e-22 76.7 0.2 1.5 1 0 0 1 1 1 1 DNA gyrase B subunit, carboxyl terminus HATPase_c PF02518.21 gi|89256995|ref|YP_514357.1| - 2.1e-15 56.3 0.7 6.9e-15 54.7 0.1 2.1 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|89256995|ref|YP_514357.1| - 3.9e-06 26.5 0.2 9.8e-06 25.2 0.1 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amidase_2 PF01510.20 gi|89256996|ref|YP_514358.1| - 6.4e-27 94.1 0.0 8.1e-27 93.8 0.0 1.1 1 0 0 1 1 1 1 N-acetylmuramoyl-L-alanine amidase MHC_I PF00129.13 gi|89256996|ref|YP_514358.1| - 0.073 12.4 0.1 0.13 11.6 0.1 1.3 1 1 0 1 1 1 0 Class I Histocompatibility antigen, domains alpha 1 and 2 PAP2 PF01569.16 gi|89256997|ref|YP_514359.1| - 8e-23 80.5 6.2 8e-23 80.5 4.3 2.1 2 1 0 2 2 2 1 PAP2 superfamily PAP2_C PF14360.1 gi|89256997|ref|YP_514359.1| - 2.1e-06 27.8 3.3 2.1e-06 27.8 2.3 3.1 3 1 1 4 4 4 1 PAP2 superfamily C-terminal PAP2_3 PF14378.1 gi|89256997|ref|YP_514359.1| - 0.0008 18.9 7.8 0.0022 17.5 5.4 1.7 1 1 0 1 1 1 1 PAP2 superfamily NUDIX PF00293.23 gi|89256998|ref|YP_514360.1| - 9.7e-24 83.5 0.0 1.1e-23 83.3 0.0 1.0 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.1 gi|89256998|ref|YP_514360.1| - 0.02 14.3 0.3 0.054 12.9 0.0 1.8 2 0 0 2 2 2 0 NUDIX domain Tautomerase_2 PF14552.1 gi|89256998|ref|YP_514360.1| - 0.064 13.2 0.0 0.15 12.1 0.0 1.5 1 0 0 1 1 1 0 Tautomerase enzyme Glucos_trans_II PF14264.1 gi|89256999|ref|YP_514361.1| - 4.9e-33 114.4 49.2 4.9e-33 114.4 34.1 1.6 2 0 0 2 2 2 1 Glucosyl transferase GtrII EamA PF00892.15 gi|89257000|ref|YP_514362.1| - 1.6e-12 47.5 40.6 3.3e-07 30.3 8.9 2.5 2 1 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|89257000|ref|YP_514362.1| - 0.0019 18.3 6.5 0.0019 18.3 4.5 4.0 1 1 0 3 3 3 1 Multidrug resistance efflux transporter Transposase_1 PF01359.13 gi|89257000|ref|YP_514362.1| - 0.025 14.3 0.0 0.045 13.5 0.0 1.3 1 0 0 1 1 1 0 Transposase (partial DDE domain) Acid_phosphat_B PF03767.9 gi|89257001|ref|YP_514363.1| - 7.5e-25 87.6 0.2 8.2e-25 87.5 0.1 1.0 1 0 0 1 1 1 1 HAD superfamily, subfamily IIIB (Acid phosphatase) AOX PF01786.12 gi|89257001|ref|YP_514363.1| - 0.12 11.7 0.0 0.17 11.2 0.0 1.2 1 0 0 1 1 1 0 Alternative oxidase 2OG-FeII_Oxy PF03171.15 gi|89257002|ref|YP_514364.1| - 5e-13 49.1 0.0 9.1e-13 48.3 0.0 1.4 1 0 0 1 1 1 1 2OG-Fe(II) oxygenase superfamily DIOX_N PF14226.1 gi|89257002|ref|YP_514364.1| - 6.2e-05 23.5 0.0 0.00012 22.5 0.0 1.5 1 0 0 1 1 1 1 non-haem dioxygenase in morphine synthesis N-terminal Phage_integrase PF00589.17 gi|89257003|ref|YP_514365.1| - 2.3e-51 173.9 0.5 3.8e-51 173.2 0.3 1.3 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.12 gi|89257003|ref|YP_514365.1| - 4.6e-19 68.3 1.2 4.6e-19 68.3 0.8 2.5 3 1 0 3 3 3 1 Phage integrase, N-terminal SAM-like domain Integrase_1 PF12835.2 gi|89257003|ref|YP_514365.1| - 5.6e-06 26.2 0.1 1.1e-05 25.3 0.0 1.5 1 0 0 1 1 1 1 Integrase Phage_int_SAM_4 PF13495.1 gi|89257003|ref|YP_514365.1| - 2.8e-05 24.3 0.7 2.8e-05 24.3 0.5 3.3 3 1 0 3 3 3 1 Phage integrase, N-terminal SAM-like domain DUF3435 PF11917.3 gi|89257003|ref|YP_514365.1| - 0.00043 19.1 0.4 0.00065 18.5 0.3 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3435) Ribosomal_L19 PF01245.15 gi|89257004|ref|YP_514366.1| - 1.2e-46 157.0 0.3 1.4e-46 156.9 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L19 Reeler PF02014.11 gi|89257004|ref|YP_514366.1| - 0.054 13.7 0.0 0.06 13.6 0.0 1.2 1 0 0 1 1 1 0 Reeler domain tRNA_m1G_MT PF01746.16 gi|89257005|ref|YP_514367.1| - 1.1e-53 181.6 0.0 1.3e-53 181.3 0.0 1.1 1 0 0 1 1 1 1 tRNA (Guanine-1)-methyltransferase GCR1_C PF12550.3 gi|89257005|ref|YP_514367.1| - 0.11 12.3 0.2 0.23 11.3 0.1 1.4 1 0 0 1 1 1 0 Transcriptional activator of glycolytic enzymes RimM PF01782.13 gi|89257006|ref|YP_514368.1| - 2.8e-15 55.9 0.0 4e-15 55.4 0.0 1.2 1 0 0 1 1 1 1 RimM N-terminal domain PRC PF05239.11 gi|89257006|ref|YP_514368.1| - 3.4e-06 26.8 1.8 8.1e-06 25.6 1.3 1.6 1 0 0 1 1 1 1 PRC-barrel domain Ribosomal_S16 PF00886.14 gi|89257007|ref|YP_514369.1| - 4.1e-26 90.4 0.0 4.9e-26 90.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S16 S-AdoMet_synt_C PF02773.11 gi|89257008|ref|YP_514370.1| - 4e-69 230.6 0.2 8.4e-69 229.6 0.2 1.6 1 0 0 1 1 1 1 S-adenosylmethionine synthetase, C-terminal domain S-AdoMet_synt_M PF02772.11 gi|89257008|ref|YP_514370.1| - 1.9e-49 166.5 0.2 1.2e-48 164.0 0.0 2.3 3 0 0 3 3 3 1 S-adenosylmethionine synthetase, central domain S-AdoMet_synt_N PF00438.15 gi|89257008|ref|YP_514370.1| - 1.3e-41 140.8 0.2 1.3e-41 140.8 0.1 2.0 3 0 0 3 3 3 1 S-adenosylmethionine synthetase, N-terminal domain FA_desaturase PF00487.19 gi|89257009|ref|YP_514371.1| - 5.4e-17 62.0 17.8 5.4e-17 62.0 12.4 1.6 1 1 1 2 2 2 1 Fatty acid desaturase EcsB PF05975.7 gi|89257009|ref|YP_514371.1| - 0.0047 15.4 1.7 0.0047 15.4 1.2 1.6 2 0 0 2 2 2 1 Bacterial ABC transporter protein EcsB RseC_MucC PF04246.7 gi|89257009|ref|YP_514371.1| - 0.58 9.7 11.5 0.14 11.7 0.5 2.3 2 0 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC Peptidase_M22 PF00814.20 gi|89257010|ref|YP_514372.1| - 1.8e-95 319.4 0.0 2.1e-95 319.2 0.0 1.0 1 0 0 1 1 1 1 Glycoprotease family CmcH_NodU PF02543.10 gi|89257010|ref|YP_514372.1| - 0.012 14.7 0.0 0.015 14.4 0.0 1.2 1 0 0 1 1 1 0 Carbamoyltransferase Glucosamine_iso PF01182.15 gi|89257010|ref|YP_514372.1| - 0.15 11.7 0.0 0.36 10.5 0.0 1.6 1 0 0 1 1 1 0 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase DUF1049 PF06305.6 gi|89257011|ref|YP_514373.1| - 1.9e-09 36.8 1.8 1.9e-09 36.8 1.2 1.8 1 1 1 2 2 2 1 Protein of unknown function (DUF1049) DUF4149 PF13664.1 gi|89257011|ref|YP_514373.1| - 0.0099 15.9 4.1 0.012 15.6 2.9 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4149) SieB PF14163.1 gi|89257011|ref|YP_514373.1| - 0.21 11.1 5.1 0.24 10.9 3.5 1.1 1 0 0 1 1 1 0 Superinfection exclusion protein B ABC2_membrane_3 PF12698.2 gi|89257011|ref|YP_514373.1| - 0.72 8.8 14.7 0.82 8.6 10.2 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein Tic20 PF09685.5 gi|89257011|ref|YP_514373.1| - 0.86 9.6 7.2 1.3 9.0 5.0 1.2 1 0 0 1 1 1 0 Tic20-like protein DUF2651 PF10852.3 gi|89257011|ref|YP_514373.1| - 1.1 9.6 7.5 1.8 9.0 5.2 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2651) Arc_PepC_II PF06847.6 gi|89257011|ref|YP_514373.1| - 1.8 9.0 4.3 0.54 10.7 1.2 1.5 1 1 0 1 1 1 0 Archaeal Peptidase A24 C-terminus Type II SdpI PF13630.1 gi|89257011|ref|YP_514373.1| - 5.3 6.8 10.9 7.4 6.3 7.1 1.6 1 1 1 2 2 2 0 SdpI/YhfL protein family DUF2207 PF09972.4 gi|89257011|ref|YP_514373.1| - 6.7 5.1 8.6 6.8 5.1 6.0 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) RNA_pol_Rpb1_1 PF04997.7 gi|89257012|ref|YP_514374.1| - 3.2e-97 325.8 0.0 3.2e-97 325.8 0.0 2.8 3 1 0 3 3 3 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_5 PF04998.12 gi|89257012|ref|YP_514374.1| - 2.6e-70 236.8 0.3 2.6e-70 236.8 0.2 1.9 2 0 0 2 2 2 1 RNA polymerase Rpb1, domain 5 RNA_pol_Rpb1_2 PF00623.15 gi|89257012|ref|YP_514374.1| - 6.1e-51 172.6 1.0 2.7e-49 167.2 0.0 2.9 2 1 0 2 2 2 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.13 gi|89257012|ref|YP_514374.1| - 2.1e-27 95.7 0.1 5.2e-27 94.5 0.0 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_4 PF05000.12 gi|89257012|ref|YP_514374.1| - 3.9e-18 65.1 3.5 6.5e-18 64.4 1.6 2.0 2 0 0 2 2 2 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb2_6 PF00562.23 gi|89257013|ref|YP_514375.1| - 2.9e-161 536.5 0.7 1e-157 524.8 0.5 3.0 2 1 0 2 2 2 2 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_3 PF04565.11 gi|89257013|ref|YP_514375.1| - 2.1e-29 101.0 0.0 6.6e-29 99.4 0.0 1.9 2 0 0 2 2 2 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_1 PF04563.10 gi|89257013|ref|YP_514375.1| - 4.7e-29 100.7 0.0 1.1e-28 99.6 0.0 1.6 1 1 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.9 gi|89257013|ref|YP_514375.1| - 1.5e-27 96.2 0.3 4.6e-17 62.0 0.0 2.8 2 0 0 2 2 2 2 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_7 PF04560.15 gi|89257013|ref|YP_514375.1| - 4.2e-27 94.2 0.0 1.3e-26 92.6 0.0 1.9 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_45 PF10385.4 gi|89257013|ref|YP_514375.1| - 3.6e-25 87.5 1.3 3.6e-25 87.5 0.9 3.2 4 0 0 4 4 4 1 RNA polymerase beta subunit external 1 domain Orbi_VP7 PF00897.12 gi|89257013|ref|YP_514375.1| - 0.2 10.5 0.1 0.36 9.7 0.0 1.3 1 0 0 1 1 1 0 Orbivirus inner capsid protein VP7 Ribosomal_L12 PF00542.14 gi|89257014|ref|YP_514376.1| - 6.4e-30 102.9 7.4 1.1e-29 102.2 5.1 1.4 1 0 0 1 1 1 1 Ribosomal protein L7/L12 C-terminal domain DUF1381 PF07129.6 gi|89257014|ref|YP_514376.1| - 0.016 14.5 2.3 0.019 14.3 0.3 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1381) MCR_alpha PF02249.12 gi|89257014|ref|YP_514376.1| - 0.028 14.4 0.2 0.051 13.5 0.1 1.4 1 1 0 1 1 1 0 Methyl-coenzyme M reductase alpha subunit, C-terminal domain PYRIN PF02758.11 gi|89257014|ref|YP_514376.1| - 0.18 11.5 0.7 0.3 10.8 0.1 1.6 2 0 0 2 2 2 0 PAAD/DAPIN/Pyrin domain Ribosomal_L10 PF00466.15 gi|89257015|ref|YP_514377.1| - 5.2e-27 93.6 0.2 8.6e-27 93.0 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein L10 DUF840 PF05801.6 gi|89257015|ref|YP_514377.1| - 0.12 12.4 0.2 1.7 8.7 0.0 2.2 1 1 1 2 2 2 0 Lagovirus protein of unknown function (DUF840) Ribosomal_L1 PF00687.16 gi|89257016|ref|YP_514378.1| - 7e-49 166.1 0.3 8.4e-49 165.8 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family PTS_IIB PF02302.12 gi|89257016|ref|YP_514378.1| - 0.24 11.9 1.8 0.27 11.7 0.2 2.0 2 1 0 2 2 2 0 PTS system, Lactose/Cellobiose specific IIB subunit Ribosomal_L11_N PF03946.9 gi|89257017|ref|YP_514379.1| - 2e-33 113.6 0.2 4.2e-33 112.6 0.2 1.6 1 0 0 1 1 1 1 Ribosomal protein L11, N-terminal domain Ribosomal_L11 PF00298.14 gi|89257017|ref|YP_514379.1| - 3.6e-30 103.8 0.9 7.1e-30 102.9 0.6 1.5 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain NusG PF02357.14 gi|89257018|ref|YP_514380.1| - 1.3e-23 83.0 0.1 2.3e-23 82.2 0.1 1.4 1 0 0 1 1 1 1 Transcription termination factor nusG KOW PF00467.24 gi|89257018|ref|YP_514380.1| - 1.5e-07 30.8 0.1 4.4e-07 29.3 0.1 1.8 1 0 0 1 1 1 1 KOW motif Spt5-NGN PF03439.8 gi|89257018|ref|YP_514380.1| - 0.0048 16.6 0.0 0.028 14.1 0.0 2.2 1 1 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section SecE PF00584.15 gi|161353779|ref|YP_514381.2| - 3e-17 61.9 8.3 3e-17 61.9 5.8 3.1 3 0 0 3 3 3 1 SecE/Sec61-gamma subunits of protein translocation complex DUF443 PF04276.7 gi|161353779|ref|YP_514381.2| - 0.00037 19.9 8.3 0.00048 19.6 5.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF443) YesK PF14150.1 gi|161353779|ref|YP_514381.2| - 0.0016 18.5 8.8 0.023 14.7 0.4 2.2 2 0 0 2 2 2 2 YesK-like protein DUF1616 PF07760.6 gi|161353779|ref|YP_514381.2| - 0.0025 16.9 7.4 0.22 10.6 1.8 2.0 1 1 1 2 2 2 2 Protein of unknown function (DUF1616) DUF2899 PF11449.3 gi|161353779|ref|YP_514381.2| - 0.0043 16.2 5.3 0.0055 15.9 3.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2899) NnrS PF05940.7 gi|161353779|ref|YP_514381.2| - 0.0067 15.3 6.5 0.0083 15.0 4.5 1.0 1 0 0 1 1 1 1 NnrS protein MpPF26 PF07666.6 gi|161353779|ref|YP_514381.2| - 0.0074 16.1 9.7 0.018 14.9 1.0 2.1 2 0 0 2 2 2 1 M penetrans paralogue family 26 PrgI PF12666.2 gi|161353779|ref|YP_514381.2| - 0.034 14.2 0.7 0.034 14.2 0.5 2.2 1 1 1 2 2 2 0 PrgI family protein SecY PF00344.15 gi|161353779|ref|YP_514381.2| - 0.16 10.8 9.1 0.2 10.5 6.3 1.0 1 0 0 1 1 1 0 SecY translocase MerC PF03203.9 gi|161353779|ref|YP_514381.2| - 0.19 12.0 4.0 0.46 10.8 0.3 2.1 2 0 0 2 2 2 0 MerC mercury resistance protein BacA PF02673.13 gi|161353779|ref|YP_514381.2| - 0.33 10.0 9.2 0.49 9.5 0.9 2.0 1 1 1 2 2 2 0 Bacitracin resistance protein BacA DUF1461 PF07314.6 gi|161353779|ref|YP_514381.2| - 0.53 10.0 11.2 0.089 12.5 0.3 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1461) DUF4231 PF14015.1 gi|161353779|ref|YP_514381.2| - 0.64 10.0 7.5 0.067 13.1 1.5 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF4231) TPPK_C PF12555.3 gi|161353779|ref|YP_514381.2| - 0.69 9.6 8.7 1.8 8.3 0.5 3.3 3 0 0 3 3 3 0 Thiamine pyrophosphokinase C terminal DUF485 PF04341.7 gi|161353779|ref|YP_514381.2| - 1.3 8.7 8.2 1.9 8.2 0.9 2.2 2 0 0 2 2 2 0 Protein of unknown function, DUF485 TcpE PF12648.2 gi|161353779|ref|YP_514381.2| - 1.8 8.7 13.7 0.97 9.6 0.7 2.2 1 1 1 2 2 2 0 TcpE family DUF3382 PF11862.3 gi|161353779|ref|YP_514381.2| - 2.4 8.0 9.9 5.4 6.9 6.7 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF3382) TRIQK PF15168.1 gi|161353779|ref|YP_514381.2| - 4 7.4 6.4 13 5.7 1.0 2.6 3 0 0 3 3 3 0 Triple QxxK/R motif-containing protein family DUF2583 PF10762.4 gi|161353779|ref|YP_514381.2| - 5.1 7.3 6.8 7.1 6.8 0.4 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2583) DUF3180 PF11377.3 gi|161353779|ref|YP_514381.2| - 6.7 6.5 14.1 5.4 6.8 3.7 2.3 1 1 2 3 3 3 0 Protein of unknown function (DUF3180) GTP_EFTU PF00009.22 gi|89257020|ref|YP_514382.1| - 2.3e-61 206.5 0.1 3e-61 206.1 0.0 1.1 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|89257020|ref|YP_514382.1| - 1.9e-35 120.9 0.1 4.7e-35 119.7 0.0 1.7 1 0 0 1 1 1 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|89257020|ref|YP_514382.1| - 1.9e-18 66.3 6.3 1.9e-18 66.3 4.3 1.8 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|89257020|ref|YP_514382.1| - 3.2e-05 23.8 0.0 6.3e-05 22.9 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase Miro PF08477.8 gi|89257020|ref|YP_514382.1| - 0.03 14.8 0.0 0.049 14.1 0.0 1.4 1 0 0 1 1 1 0 Miro-like protein cobW PF02492.14 gi|89257020|ref|YP_514382.1| - 0.071 12.5 0.3 0.24 10.8 0.0 1.9 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.1 gi|89257021|ref|YP_514383.1| - 2.1e-14 53.5 0.0 3.4e-14 52.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain UvrD_C_2 PF13538.1 gi|89257021|ref|YP_514383.1| - 5.2e-13 49.0 0.1 1.7e-12 47.4 0.0 1.9 1 1 1 2 2 2 1 UvrD-like helicase C-terminal domain Viral_helicase1 PF01443.13 gi|89257021|ref|YP_514383.1| - 1.2e-10 41.2 0.1 2.5e-06 27.1 0.0 2.4 2 0 0 2 2 2 2 Viral (Superfamily 1) RNA helicase PIF1 PF05970.9 gi|89257021|ref|YP_514383.1| - 3.3e-05 22.9 0.1 5.7e-05 22.2 0.0 1.6 1 1 0 1 1 1 1 PIF1-like helicase UvrD_C PF13361.1 gi|89257021|ref|YP_514383.1| - 0.00072 19.1 0.7 0.0014 18.1 0.1 1.7 1 1 0 1 1 1 1 UvrD-like helicase C-terminal domain MS_channel PF00924.13 gi|89257022|ref|YP_514384.1| - 3e-17 62.6 4.4 3e-17 62.6 3.0 2.0 2 0 0 2 2 2 1 Mechanosensitive ion channel TM_helix PF05552.7 gi|89257022|ref|YP_514384.1| - 1.5e-05 24.5 0.5 1.5e-05 24.5 0.3 2.0 2 0 0 2 2 2 1 Conserved TM helix DUF95 PF01944.12 gi|89257022|ref|YP_514384.1| - 0.26 10.9 8.1 0.38 10.3 5.6 1.2 1 0 0 1 1 1 0 Integral membrane protein DUF95 DUF3533 PF12051.3 gi|89257022|ref|YP_514384.1| - 0.86 8.2 6.8 1 8.0 4.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3533) DUF4481 PF14800.1 gi|89257022|ref|YP_514384.1| - 0.92 8.3 5.7 1.3 7.9 4.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4481) DUF3262 PF11660.3 gi|89257022|ref|YP_514384.1| - 1 9.4 5.2 2.6 8.2 3.6 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3262) DUF3278 PF11683.3 gi|89257022|ref|YP_514384.1| - 2.2 8.2 5.3 10 6.1 3.6 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF3278) FtsX PF02687.16 gi|89257022|ref|YP_514384.1| - 3.2 7.5 11.2 15 5.3 7.7 1.9 1 1 0 1 1 1 0 FtsX-like permease family DUF4064 PF13273.1 gi|89257022|ref|YP_514384.1| - 4.9 7.3 10.4 29 4.8 7.2 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF4064) MIP PF00230.15 gi|89257024|ref|YP_514386.1| - 1.7e-43 148.7 13.2 3.1e-43 147.8 9.2 1.4 1 1 0 1 1 1 1 Major intrinsic protein Peptidase_U4 PF03419.8 gi|89257024|ref|YP_514386.1| - 0.25 10.3 2.5 0.24 10.4 0.8 1.5 1 1 0 1 1 1 0 Sporulation factor SpoIIGA DAO PF01266.19 gi|89257025|ref|YP_514387.1| - 1.9e-39 135.5 0.0 2.6e-39 135.1 0.0 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|89257025|ref|YP_514387.1| - 1.5e-07 30.6 0.3 0.00017 20.5 0.2 2.2 2 0 0 2 2 2 2 FAD binding domain Pyr_redox_2 PF07992.9 gi|89257025|ref|YP_514387.1| - 5.2e-07 29.7 0.0 0.0015 18.4 0.0 2.5 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|89257025|ref|YP_514387.1| - 1.8e-06 27.3 0.0 4.1e-05 22.8 0.0 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|89257025|ref|YP_514387.1| - 2.7e-06 26.7 0.0 5e-06 25.8 0.0 1.4 1 1 0 1 1 1 1 FAD binding domain GIDA PF01134.17 gi|89257025|ref|YP_514387.1| - 3.8e-06 26.0 2.1 0.0049 15.7 0.2 2.3 2 0 0 2 2 2 2 Glucose inhibited division protein A HI0933_like PF03486.9 gi|89257025|ref|YP_514387.1| - 9.6e-06 24.3 0.8 4.6e-05 22.0 0.1 2.2 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_8 PF13450.1 gi|89257025|ref|YP_514387.1| - 0.0025 17.7 0.2 0.006 16.5 0.2 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|89257025|ref|YP_514387.1| - 0.01 15.8 0.7 0.85 9.6 0.2 2.7 2 1 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|89257025|ref|YP_514387.1| - 0.063 12.3 0.1 0.17 10.9 0.1 1.6 1 0 0 1 1 1 0 Thi4 family DDE_3 PF13358.1 gi|89257026|ref|YP_514388.1| - 1.7e-31 108.9 0.0 2.8e-31 108.2 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.11 gi|89257026|ref|YP_514388.1| - 1.5e-07 31.0 0.2 1.1e-06 28.3 0.1 2.1 2 0 0 2 2 2 1 Transposase DDE_1 PF03184.14 gi|89257026|ref|YP_514388.1| - 5.8e-07 28.8 0.1 9.5e-07 28.1 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_28 PF13518.1 gi|89257026|ref|YP_514388.1| - 0.00058 19.8 0.0 0.0018 18.2 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain rve PF00665.21 gi|89257026|ref|YP_514388.1| - 0.00072 19.6 0.0 0.0013 18.7 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.1 gi|89257026|ref|YP_514388.1| - 0.0087 15.6 0.0 0.029 14.0 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.1 gi|89257026|ref|YP_514388.1| - 0.02 15.0 0.0 0.032 14.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix DDE_Tnp_ISAZ013 PF07592.6 gi|89257026|ref|YP_514388.1| - 0.039 12.6 0.6 0.32 9.7 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain HNH_4 PF13395.1 gi|89257027|ref|YP_514389.1| - 0.12 11.9 0.0 0.2 11.2 0.0 1.4 1 0 0 1 1 1 0 HNH endonuclease ATP-grasp_3 PF02655.9 gi|89257028|ref|YP_514390.1| - 6.6e-08 32.5 0.0 1.2e-07 31.6 0.0 1.5 1 1 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|89257028|ref|YP_514390.1| - 1.4e-05 24.9 0.0 2.2e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|89257028|ref|YP_514390.1| - 0.00024 19.9 0.0 0.0027 16.5 0.0 2.4 3 0 0 3 3 3 1 ATP-grasp in the biosynthetic pathway with Ter operon HATPase_c PF02518.21 gi|89257031|ref|YP_514393.1| - 1.4e-24 85.9 0.4 9.2e-24 83.3 0.1 2.2 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|89257031|ref|YP_514393.1| - 2.9e-12 46.4 0.1 8.2e-12 44.9 0.1 1.8 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.1 gi|89257031|ref|YP_514393.1| - 0.00016 21.2 0.6 0.00016 21.2 0.4 3.0 3 0 0 3 3 3 1 GHKL domain HATPase_c_3 PF13589.1 gi|89257031|ref|YP_514393.1| - 0.001 18.7 0.7 0.0062 16.1 0.5 2.2 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|89257031|ref|YP_514393.1| - 0.0076 16.0 0.1 0.036 13.8 0.0 2.1 3 0 0 3 3 3 1 Histidine kinase-like ATPase domain DUF21 PF01595.15 gi|89257031|ref|YP_514393.1| - 0.026 13.8 0.1 0.026 13.8 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function DUF21 TarH PF02203.10 gi|89257031|ref|YP_514393.1| - 0.077 12.8 1.6 0.25 11.1 0.1 2.3 3 0 0 3 3 3 0 Tar ligand binding domain homologue HAMP PF00672.20 gi|89257031|ref|YP_514393.1| - 0.2 11.8 1.2 0.34 11.1 0.0 2.0 2 0 0 2 2 2 0 HAMP domain DUF1731 PF08338.6 gi|89257032|ref|YP_514394.1| - 2.1e-16 59.1 0.0 3.7e-16 58.3 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1731) Epimerase PF01370.16 gi|89257032|ref|YP_514394.1| - 9.1e-08 31.8 0.0 1.3e-07 31.2 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|89257032|ref|YP_514394.1| - 0.055 12.3 0.0 0.25 10.2 0.0 1.9 1 1 0 1 1 1 0 RmlD substrate binding domain Cyto_ox_2 PF02322.10 gi|89257033|ref|YP_514395.1| - 3.3e-75 253.2 30.9 3.7e-75 253.1 21.4 1.0 1 0 0 1 1 1 1 Cytochrome oxidase subunit II TMEM154 PF15102.1 gi|89257033|ref|YP_514395.1| - 5.3 6.7 6.2 8.4 6.1 0.0 3.1 3 0 0 3 3 3 0 TMEM154 protein family DUF3429 PF11911.3 gi|89257034|ref|YP_514396.1| - 5.8e-25 87.9 6.2 6.4e-25 87.7 4.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3429) T2SE PF00437.15 gi|89257035|ref|YP_514397.1| - 1.7e-29 102.5 2.0 1.7e-29 102.5 1.4 1.4 2 0 0 2 2 2 1 Type II/IV secretion system protein DUF2089 PF09862.4 gi|89257035|ref|YP_514397.1| - 0.046 13.5 0.2 0.085 12.6 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2089) HORMA PF02301.13 gi|89257036|ref|YP_514398.1| - 0.031 13.7 0.0 0.031 13.7 0.0 1.1 1 0 0 1 1 1 0 HORMA domain DUF1493 PF07377.7 gi|89257036|ref|YP_514398.1| - 0.084 12.9 0.5 0.18 11.8 0.3 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1493) Aconitase PF00330.15 gi|89257037|ref|YP_514399.1| - 3.9e-143 477.3 0.0 4.8e-143 477.0 0.0 1.1 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.14 gi|89257037|ref|YP_514399.1| - 4.2e-44 149.8 0.0 8.9e-44 148.7 0.0 1.6 1 0 0 1 1 1 1 Aconitase C-terminal domain Dyp_perox PF04261.7 gi|89257038|ref|YP_514400.1| - 3.6e-29 101.4 0.0 6.6e-29 100.6 0.0 1.4 1 1 0 1 1 1 1 Dyp-type peroxidase family GtrA PF04138.9 gi|89257039|ref|YP_514401.1| - 2e-19 69.6 22.9 2.2e-19 69.5 15.8 1.0 1 0 0 1 1 1 1 GtrA-like protein NPCC PF08058.6 gi|89257039|ref|YP_514401.1| - 4.6 7.0 7.2 1.8 8.3 3.5 1.4 1 1 0 1 1 1 0 Nuclear pore complex component ABC2_membrane PF01061.19 gi|89257039|ref|YP_514401.1| - 9.4 5.3 22.4 4.8 6.2 7.0 2.0 1 1 1 2 2 2 0 ABC-2 type transporter Radical_SAM PF04055.16 gi|89257040|ref|YP_514402.1| - 9.9e-15 55.1 0.1 2.9e-14 53.5 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily HemN_C PF06969.11 gi|89257040|ref|YP_514402.1| - 5.1e-08 32.8 0.2 1.9e-07 31.0 0.0 2.0 2 0 0 2 2 2 1 HemN C-terminal domain Fer4_14 PF13394.1 gi|89257040|ref|YP_514402.1| - 8.3e-06 25.8 0.1 3.6e-05 23.7 0.0 2.0 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|89257040|ref|YP_514402.1| - 0.00012 22.1 0.2 0.00038 20.5 0.0 1.9 2 0 0 2 2 2 1 4Fe-4S single cluster domain DUF2624 PF11116.3 gi|89257040|ref|YP_514402.1| - 0.014 15.8 0.6 1.7 9.2 0.0 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2624) HTH_45 PF14947.1 gi|89257040|ref|YP_514402.1| - 0.26 11.1 3.0 0.19 11.5 0.3 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix PepSY_2 PF13670.1 gi|89257041|ref|YP_514403.1| - 3.3e-20 71.7 0.1 7.2e-12 45.0 0.0 2.0 1 1 1 2 2 2 2 Peptidase propeptide and YPEB domain PepSY PF03413.14 gi|89257041|ref|YP_514403.1| - 6.7e-08 33.0 0.5 0.00015 22.3 0.0 2.3 2 0 0 2 2 2 2 Peptidase propeptide and YPEB domain DUF2874 PF11396.3 gi|89257041|ref|YP_514403.1| - 5.5e-05 23.0 1.0 0.18 11.7 0.3 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF2874) Tcp10_C PF07202.8 gi|89257041|ref|YP_514403.1| - 0.001 18.6 0.0 0.0013 18.3 0.0 1.2 1 0 0 1 1 1 1 T-complex protein 10 C-terminus HCBP_related PF06594.6 gi|89257041|ref|YP_514403.1| - 0.016 14.7 0.2 0.058 13.0 0.1 1.9 1 0 0 1 1 1 0 Haemolysin-type calcium binding protein related domain SecG PF03840.9 gi|89257042|ref|YP_514404.1| - 5.4e-23 80.5 10.3 7.5e-23 80.0 7.1 1.2 1 0 0 1 1 1 1 Preprotein translocase SecG subunit Peptidase_S49_N PF08496.5 gi|89257042|ref|YP_514404.1| - 0.021 14.6 1.5 0.081 12.7 0.0 1.9 2 0 0 2 2 2 0 Peptidase family S49 N-terminal DUF2668 PF10873.3 gi|89257042|ref|YP_514404.1| - 0.18 11.9 1.5 0.19 11.8 0.6 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2668) ETRAMP PF09716.5 gi|89257042|ref|YP_514404.1| - 0.87 9.5 4.7 0.51 10.3 0.1 2.1 2 0 0 2 2 2 0 Malarial early transcribed membrane protein (ETRAMP) DUF1212 PF06738.7 gi|89257042|ref|YP_514404.1| - 6.2 6.2 9.5 7.2 6.0 6.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1212) TIM PF00121.13 gi|89257043|ref|YP_514405.1| - 1.3e-86 289.6 0.1 1.4e-86 289.5 0.1 1.0 1 0 0 1 1 1 1 Triosephosphate isomerase PGM_PMM_I PF02878.11 gi|89257044|ref|YP_514406.1| - 2e-39 134.2 0.1 5.5e-39 132.8 0.1 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_III PF02880.11 gi|89257044|ref|YP_514406.1| - 3.7e-23 81.7 0.0 8.7e-23 80.5 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_II PF02879.11 gi|89257044|ref|YP_514406.1| - 6.9e-20 71.3 0.2 1.8e-19 69.9 0.1 1.8 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.15 gi|89257044|ref|YP_514406.1| - 8.3e-17 60.9 0.6 2.2e-16 59.5 0.4 1.8 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Pribosyltran PF00156.22 gi|89257045|ref|YP_514407.1| - 1.9e-21 76.0 0.1 2.3e-21 75.8 0.1 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|89257045|ref|YP_514407.1| - 0.00044 19.5 0.0 0.0013 17.9 0.0 1.7 2 0 0 2 2 2 1 Uracil phosphoribosyltransferase ETF PF01012.16 gi|89257045|ref|YP_514407.1| - 0.034 13.8 0.4 5.5 6.6 0.0 2.1 2 0 0 2 2 2 0 Electron transfer flavoprotein domain PRTase_2 PF15609.1 gi|89257045|ref|YP_514407.1| - 0.12 11.6 0.3 0.45 9.7 0.1 1.7 2 0 0 2 2 2 0 Phosphoribosyl transferase 2-oxoacid_dh PF00198.18 gi|89257046|ref|YP_514408.1| - 5.4e-82 274.5 0.9 7.8e-82 273.9 0.0 1.6 2 0 0 2 2 2 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Biotin_lipoyl PF00364.17 gi|89257046|ref|YP_514408.1| - 6e-40 134.7 6.3 2.5e-19 68.6 0.8 2.6 2 0 0 2 2 2 2 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.1 gi|89257046|ref|YP_514408.1| - 3.2e-12 45.9 0.2 0.00012 21.6 0.1 2.8 2 0 0 2 2 2 2 Biotin-lipoyl like E3_binding PF02817.12 gi|89257046|ref|YP_514408.1| - 1.3e-08 34.2 0.1 2.5e-08 33.4 0.0 1.5 1 0 0 1 1 1 1 e3 binding domain HlyD_3 PF13437.1 gi|89257046|ref|YP_514408.1| - 6.6e-07 29.6 9.2 0.0096 16.2 0.2 4.2 3 1 1 4 4 4 2 HlyD family secretion protein QRPTase_N PF02749.11 gi|89257046|ref|YP_514408.1| - 1.4e-05 24.8 0.1 0.12 12.2 0.0 2.8 2 0 0 2 2 2 2 Quinolinate phosphoribosyl transferase, N-terminal domain RnfC_N PF13375.1 gi|89257046|ref|YP_514408.1| - 4.3e-05 23.1 1.2 0.042 13.5 0.0 3.0 2 1 1 3 3 3 3 RnfC Barrel sandwich hybrid domain HlyD PF00529.15 gi|89257046|ref|YP_514408.1| - 0.00014 21.2 4.8 0.31 10.3 0.1 3.5 2 2 0 2 2 2 2 HlyD family secretion protein GCV_H PF01597.14 gi|89257046|ref|YP_514408.1| - 0.00049 19.7 4.8 0.35 10.5 0.3 3.6 3 2 1 4 4 4 2 Glycine cleavage H-protein PYNP_C PF07831.8 gi|89257046|ref|YP_514408.1| - 0.02 14.3 2.2 4.2 6.8 0.0 3.9 4 0 0 4 4 4 0 Pyrimidine nucleoside phosphorylase C-terminal domain Transket_pyr PF02779.19 gi|89257047|ref|YP_514409.1| - 5.6e-57 192.1 0.0 9.3e-57 191.3 0.0 1.3 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain E1_dh PF00676.15 gi|89257047|ref|YP_514409.1| - 3.1e-49 167.3 0.0 5.1e-49 166.6 0.0 1.3 1 0 0 1 1 1 1 Dehydrogenase E1 component Fer2_3 PF13085.1 gi|89257048|ref|YP_514410.1| - 1.3e-32 111.8 0.0 2.1e-32 111.2 0.0 1.3 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.1 gi|89257048|ref|YP_514410.1| - 2.9e-10 39.9 2.3 5.8e-10 39.0 1.6 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|89257048|ref|YP_514410.1| - 2.7e-09 37.2 1.9 5.2e-09 36.3 1.3 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|89257048|ref|YP_514410.1| - 2e-08 34.5 0.9 1.7e-07 31.5 0.1 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|89257048|ref|YP_514410.1| - 5e-06 26.2 3.3 1.2e-05 25.0 2.3 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|89257048|ref|YP_514410.1| - 5.4e-06 26.5 4.0 0.018 15.2 0.5 2.9 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|89257048|ref|YP_514410.1| - 0.00035 20.8 6.8 0.002 18.4 5.0 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|89257048|ref|YP_514410.1| - 0.036 14.8 4.4 5.2 7.8 0.2 2.7 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|89257048|ref|YP_514410.1| - 0.039 13.8 12.2 0.78 9.7 3.7 2.8 2 0 0 2 2 2 0 4Fe-4S binding domain Fer2 PF00111.22 gi|89257048|ref|YP_514410.1| - 0.095 12.4 3.6 0.24 11.1 0.3 2.8 2 1 0 2 2 2 0 2Fe-2S iron-sulfur cluster binding domain Fer4_15 PF13459.1 gi|89257048|ref|YP_514410.1| - 0.15 12.6 5.2 4.9 7.8 1.0 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|89257048|ref|YP_514410.1| - 0.21 11.9 15.1 0.28 11.6 1.9 2.7 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_3 PF12798.2 gi|89257048|ref|YP_514410.1| - 0.82 10.3 14.7 2.5 8.8 0.4 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4 PF00037.22 gi|89257048|ref|YP_514410.1| - 4.9 6.9 15.0 3.1 7.5 0.6 2.8 2 0 0 2 2 2 0 4Fe-4S binding domain FAD_binding_2 PF00890.19 gi|89257049|ref|YP_514411.1| - 4.8e-121 404.5 2.5 6e-121 404.1 1.7 1.1 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.15 gi|89257049|ref|YP_514411.1| - 8.6e-41 138.8 1.8 1.5e-40 138.0 1.2 1.4 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term DAO PF01266.19 gi|89257049|ref|YP_514411.1| - 3.2e-05 23.0 0.1 8.6e-05 21.5 0.0 1.8 1 1 0 1 1 1 1 FAD dependent oxidoreductase Thi4 PF01946.12 gi|89257049|ref|YP_514411.1| - 0.00012 21.3 1.4 0.0043 16.1 0.1 3.1 3 0 0 3 3 3 1 Thi4 family Pyr_redox_2 PF07992.9 gi|89257049|ref|YP_514411.1| - 0.00015 21.7 8.7 0.00038 20.3 0.0 2.9 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|89257049|ref|YP_514411.1| - 0.0011 17.9 3.5 0.0031 16.4 0.9 2.1 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_binding_3 PF01494.14 gi|89257049|ref|YP_514411.1| - 0.018 14.1 0.1 0.033 13.2 0.1 1.4 1 0 0 1 1 1 0 FAD binding domain HI0933_like PF03486.9 gi|89257049|ref|YP_514411.1| - 0.022 13.2 1.0 0.041 12.3 0.1 1.9 2 0 0 2 2 2 0 HI0933-like protein Pyr_redox_3 PF13738.1 gi|89257049|ref|YP_514411.1| - 0.061 13.3 0.2 0.55 10.2 0.0 2.2 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|89257049|ref|YP_514411.1| - 0.082 11.9 3.5 24 3.8 0.0 3.4 3 1 0 3 3 3 0 FAD dependent oxidoreductase Sdh_cyt PF01127.17 gi|89257050|ref|YP_514412.1| - 5.1e-10 39.2 16.5 5.1e-10 39.2 11.5 1.5 1 1 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DoxX PF07681.7 gi|89257050|ref|YP_514412.1| - 0.32 11.4 10.2 0.74 10.2 7.1 1.9 1 1 0 1 1 1 0 DoxX Sdh_cyt PF01127.17 gi|89257051|ref|YP_514413.1| - 1.4e-23 83.0 8.7 1.6e-23 82.8 6.1 1.0 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Tmemb_170 PF10190.4 gi|89257051|ref|YP_514413.1| - 8.5e-05 22.5 5.3 8.5e-05 22.5 3.7 1.9 2 0 0 2 2 2 1 Putative transmembrane protein 170 DUF131 PF01998.12 gi|89257051|ref|YP_514413.1| - 2.9 7.3 6.0 6.3 6.2 0.4 2.3 2 0 0 2 2 2 0 Protein of unknown function DUF131 Citrate_synt PF00285.16 gi|89257052|ref|YP_514414.1| - 3.4e-132 440.5 0.2 3.8e-132 440.3 0.2 1.0 1 0 0 1 1 1 1 Citrate synthase MFS_1 PF07690.11 gi|89257053|ref|YP_514415.1| - 1.4e-22 79.8 45.4 2.2e-12 46.3 10.1 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily Acatn PF13000.2 gi|89257053|ref|YP_514415.1| - 3.9e-07 28.9 7.2 3.9e-07 28.9 5.0 3.6 3 1 0 3 3 3 1 Acetyl-coenzyme A transporter 1 Sod_Fe_C PF02777.13 gi|89257054|ref|YP_514416.1| - 5.8e-43 145.0 2.2 1.2e-42 144.0 0.5 2.1 3 0 0 3 3 3 1 Iron/manganese superoxide dismutases, C-terminal domain Sod_Fe_N PF00081.17 gi|89257054|ref|YP_514416.1| - 4.8e-33 113.2 1.4 9.4e-33 112.3 1.0 1.5 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, alpha-hairpin domain GSCFA PF08885.6 gi|89257054|ref|YP_514416.1| - 0.029 13.9 0.2 0.031 13.8 0.2 1.2 1 0 0 1 1 1 0 GSCFA family DUF1007 PF06226.8 gi|89257054|ref|YP_514416.1| - 0.1 12.3 0.0 0.26 11.0 0.0 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1007) Glutaredoxin PF00462.19 gi|89257055|ref|YP_514417.1| - 8e-16 57.7 0.0 1.2e-15 57.2 0.0 1.3 1 0 0 1 1 1 1 Glutaredoxin Glyco_hydro_18 PF00704.23 gi|89257056|ref|YP_514418.1| - 2e-10 40.6 14.8 1.1e-06 28.3 2.4 3.3 1 1 3 4 4 4 2 Glycosyl hydrolases family 18 CBM_5_12 PF02839.9 gi|89257056|ref|YP_514418.1| - 0.00079 18.9 0.9 0.76 9.4 0.1 4.1 3 0 0 3 3 3 1 Carbohydrate binding domain ComA PF02679.10 gi|89257056|ref|YP_514418.1| - 0.11 11.5 0.0 0.96 8.3 0.0 2.1 2 0 0 2 2 2 0 (2R)-phospho-3-sulfolactate synthase (ComA) ATP-synt_DE_N PF02823.11 gi|89257057|ref|YP_514419.1| - 1.2e-24 85.8 0.3 1.7e-24 85.3 0.2 1.2 1 0 0 1 1 1 1 ATP synthase, Delta/Epsilon chain, beta-sandwich domain ATP-synt_DE PF00401.15 gi|89257057|ref|YP_514419.1| - 4.5e-05 23.2 11.7 6.2e-05 22.7 8.1 1.2 1 0 0 1 1 1 1 ATP synthase, Delta/Epsilon chain, long alpha-helix domain ATP-synt_ab PF00006.20 gi|89257058|ref|YP_514420.1| - 1e-63 214.7 0.0 1.9e-63 213.8 0.0 1.5 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|89257058|ref|YP_514420.1| - 4.2e-27 94.8 0.2 7.1e-27 94.1 0.2 1.4 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|89257058|ref|YP_514420.1| - 2.8e-20 72.3 2.7 5.4e-20 71.3 1.9 1.5 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain AAA_25 PF13481.1 gi|89257058|ref|YP_514420.1| - 0.0027 17.1 0.0 0.0076 15.6 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|89257058|ref|YP_514420.1| - 0.0044 17.2 0.1 0.23 11.6 0.0 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) MobB PF03205.9 gi|89257058|ref|YP_514420.1| - 0.024 14.3 0.1 2.5 7.7 0.0 2.6 2 1 0 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B RNA_helicase PF00910.17 gi|89257058|ref|YP_514420.1| - 0.038 14.1 0.0 0.077 13.1 0.0 1.5 1 0 0 1 1 1 0 RNA helicase NB-ARC PF00931.17 gi|89257058|ref|YP_514420.1| - 0.49 9.2 1.6 0.91 8.3 0.2 1.9 2 0 0 2 2 2 0 NB-ARC domain ATP-synt PF00231.14 gi|89257059|ref|YP_514421.1| - 7.5e-93 311.0 5.9 8.4e-93 310.8 4.1 1.0 1 0 0 1 1 1 1 ATP synthase DUF4109 PF13397.1 gi|89257059|ref|YP_514421.1| - 0.043 14.1 0.0 0.1 13.0 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4109) ATP-synt_ab PF00006.20 gi|89257060|ref|YP_514422.1| - 1.2e-72 243.9 0.1 2.2e-72 243.0 0.0 1.4 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|89257060|ref|YP_514422.1| - 6.8e-19 68.4 0.7 1.7e-18 67.1 0.5 1.7 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|89257060|ref|YP_514422.1| - 2.7e-12 46.7 0.3 6e-12 45.5 0.2 1.6 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.5 gi|89257060|ref|YP_514422.1| - 4.7e-06 26.4 0.7 2.5e-05 24.1 0.5 2.2 1 1 1 2 2 2 1 HAS barrel domain OSCP PF00213.13 gi|89257061|ref|YP_514423.1| - 7.1e-48 162.7 1.2 8e-48 162.5 0.8 1.0 1 0 0 1 1 1 1 ATP synthase delta (OSCP) subunit ATP-synt_B PF00430.13 gi|89257062|ref|YP_514424.1| - 1.5e-28 99.1 17.2 1.8e-28 98.9 11.9 1.1 1 0 0 1 1 1 1 ATP synthase B/B' CF(0) HrpE PF06188.7 gi|89257062|ref|YP_514424.1| - 0.0026 17.5 12.0 0.0032 17.2 8.3 1.2 1 0 0 1 1 1 1 HrpE/YscL/FliH and V-type ATPase subunit E FliH PF02108.11 gi|89257062|ref|YP_514424.1| - 0.018 14.8 4.9 0.018 14.8 3.4 1.9 1 1 1 2 2 2 0 Flagellar assembly protein FliH FlaF PF07309.6 gi|89257062|ref|YP_514424.1| - 0.33 10.8 7.7 0.46 10.3 5.1 1.4 1 1 0 1 1 1 0 Flagellar protein FlaF RPAP1_N PF08621.5 gi|89257062|ref|YP_514424.1| - 1.4 8.5 5.4 0.24 11.0 0.6 2.0 2 0 0 2 2 2 0 RPAP1-like, N-terminal Tom37_C PF11801.3 gi|89257062|ref|YP_514424.1| - 3.8 7.3 6.6 14 5.5 4.6 1.8 1 1 0 1 1 1 0 Tom37 C-terminal domain DivIVA PF05103.8 gi|89257062|ref|YP_514424.1| - 4.7 7.2 21.2 0.18 11.8 6.7 2.1 1 1 1 2 2 2 0 DivIVA protein ATP-synt_C PF00137.16 gi|89257063|ref|YP_514425.1| - 4.8e-14 52.0 13.5 6.2e-14 51.6 9.4 1.2 1 0 0 1 1 1 1 ATP synthase subunit C EpuA PF11772.3 gi|89257063|ref|YP_514425.1| - 0.33 10.4 9.2 0.079 12.4 1.5 2.3 2 0 0 2 2 2 0 DNA-directed RNA polymerase subunit beta ATP-synt_A PF00119.15 gi|89257064|ref|YP_514426.1| - 1e-49 168.9 22.1 1.2e-49 168.7 15.3 1.0 1 0 0 1 1 1 1 ATP synthase A chain DUF3260 PF11658.3 gi|89257064|ref|YP_514426.1| - 0.58 8.2 6.8 0.76 7.8 4.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3260) ATP_synt_I PF03899.10 gi|89257065|ref|YP_514427.1| - 6.9e-08 32.5 15.0 1.2e-07 31.8 10.4 1.4 1 0 0 1 1 1 1 ATP synthase I chain AtpR PF12966.2 gi|89257065|ref|YP_514427.1| - 3.6 7.7 11.2 0.44 10.7 4.5 1.8 1 1 1 2 2 2 0 N-ATPase, AtpR subunit MFS_1 PF07690.11 gi|89257066|ref|YP_514428.1| - 1.8e-32 112.4 38.9 1.8e-32 112.4 27.0 1.9 2 1 1 3 3 3 1 Major Facilitator Superfamily MFS_2 PF13347.1 gi|89257066|ref|YP_514428.1| - 1.9e-10 39.7 21.4 1.9e-10 39.7 14.8 3.2 2 1 1 3 3 3 1 MFS/sugar transport protein Sugar_tr PF00083.19 gi|89257066|ref|YP_514428.1| - 0.0017 16.9 33.7 0.019 13.5 13.4 2.4 2 0 0 2 2 2 2 Sugar (and other) transporter DUF912 PF06024.7 gi|89257066|ref|YP_514428.1| - 0.041 13.9 0.1 0.35 10.9 0.0 2.4 2 0 0 2 2 2 0 Nucleopolyhedrovirus protein of unknown function (DUF912) SpoVAB PF13782.1 gi|89257066|ref|YP_514428.1| - 0.048 13.6 7.9 0.086 12.8 3.0 2.8 1 1 1 2 2 2 0 Stage V sporulation protein AB PseudoU_synth_2 PF00849.17 gi|89257067|ref|YP_514429.1| - 2.3e-32 112.1 0.2 3.5e-32 111.5 0.2 1.3 1 0 0 1 1 1 1 RNA pseudouridylate synthase S4 PF01479.20 gi|89257067|ref|YP_514429.1| - 9.4e-07 28.1 0.4 2.7e-06 26.7 0.3 1.9 1 0 0 1 1 1 1 S4 domain HTH_17 PF12728.2 gi|89257067|ref|YP_514429.1| - 0.038 14.2 0.1 0.089 13.0 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain AFG1_ATPase PF03969.11 gi|89257068|ref|YP_514430.1| - 2.8e-104 348.7 0.9 3.3e-104 348.5 0.6 1.0 1 0 0 1 1 1 1 AFG1-like ATPase AAA PF00004.24 gi|89257068|ref|YP_514430.1| - 0.0016 18.6 0.0 0.014 15.6 0.0 2.3 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) WhiA_N PF10298.4 gi|89257068|ref|YP_514430.1| - 0.064 13.1 0.1 0.6 9.9 0.0 2.3 2 0 0 2 2 2 0 WhiA N-terminal LAGLIDADG-like domain ResIII PF04851.10 gi|89257068|ref|YP_514430.1| - 0.093 12.5 0.8 0.17 11.6 0.1 1.9 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit IstB_IS21 PF01695.12 gi|89257068|ref|YP_514430.1| - 0.12 11.7 0.0 3.7 6.9 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein MFS_1 PF07690.11 gi|89257069|ref|YP_514431.1| - 6.6e-30 104.0 39.6 6.6e-30 104.0 27.5 1.5 2 0 0 2 2 2 1 Major Facilitator Superfamily MFS_2 PF13347.1 gi|89257069|ref|YP_514431.1| - 7.9e-07 27.8 10.8 7.9e-07 27.8 7.5 2.9 2 1 2 4 4 4 2 MFS/sugar transport protein Sugar_tr PF00083.19 gi|89257069|ref|YP_514431.1| - 8.1e-06 24.6 31.9 0.0036 15.9 12.9 2.5 1 1 1 2 2 2 2 Sugar (and other) transporter tRNA-synt_His PF13393.1 gi|89257070|ref|YP_514432.1| - 1.7e-47 162.0 0.0 2.6e-47 161.4 0.0 1.3 1 0 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.20 gi|89257070|ref|YP_514432.1| - 8.4e-22 77.5 0.0 1.6e-21 76.6 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|89257070|ref|YP_514432.1| - 2.7e-09 36.8 0.1 1.1e-08 34.9 0.0 2.0 2 0 0 2 2 2 1 Anticodon binding domain tRNA-synt_2 PF00152.15 gi|89257070|ref|YP_514432.1| - 0.0075 15.0 0.3 0.36 9.5 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class II (D, K and N) RBFA PF02033.13 gi|89257071|ref|YP_514433.1| - 1.3e-29 102.3 0.4 1.8e-29 101.8 0.3 1.2 1 0 0 1 1 1 1 Ribosome-binding factor A GTP_EFTU PF00009.22 gi|89257072|ref|YP_514434.1| - 2.1e-41 141.4 1.5 2.1e-41 141.4 1.1 2.9 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain IF-2 PF11987.3 gi|89257072|ref|YP_514434.1| - 2.2e-39 133.7 2.9 2.2e-39 133.7 2.0 2.4 2 0 0 2 2 2 1 Translation-initiation factor 2 IF2_N PF04760.10 gi|89257072|ref|YP_514434.1| - 7.8e-25 86.2 9.0 1.4e-16 59.8 0.4 3.6 3 0 0 3 3 3 2 Translation initiation factor IF-2, N-terminal region GTP_EFTU_D2 PF03144.20 gi|89257072|ref|YP_514434.1| - 2.9e-13 49.7 3.0 5.6e-06 26.3 0.1 3.5 2 0 0 2 2 2 2 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|89257072|ref|YP_514434.1| - 1.7e-08 34.4 0.1 7.1e-08 32.4 0.0 2.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase Miro PF08477.8 gi|89257072|ref|YP_514434.1| - 4.8e-08 33.5 0.1 4.8e-08 33.5 0.1 2.5 2 0 0 2 2 2 1 Miro-like protein Ras PF00071.17 gi|89257072|ref|YP_514434.1| - 1.1e-07 31.3 0.0 1.1e-07 31.3 0.0 3.0 2 1 0 2 2 2 1 Ras family Arf PF00025.16 gi|89257072|ref|YP_514434.1| - 1.1e-07 31.2 0.0 4.1e-07 29.3 0.0 2.0 1 0 0 1 1 1 1 ADP-ribosylation factor family FeoB_N PF02421.13 gi|89257072|ref|YP_514434.1| - 0.00029 20.1 1.1 0.0023 17.2 0.1 2.9 2 1 0 2 2 2 1 Ferrous iron transport protein B PCI PF01399.22 gi|89257072|ref|YP_514434.1| - 0.01 16.1 1.5 0.041 14.1 0.1 2.5 2 0 0 2 2 2 0 PCI domain HN PF00423.14 gi|89257072|ref|YP_514434.1| - 0.57 8.4 3.5 0.88 7.7 2.4 1.2 1 0 0 1 1 1 0 Haemagglutinin-neuraminidase NusA_N PF08529.6 gi|89257073|ref|YP_514435.1| - 2.7e-30 104.8 7.2 2.7e-30 104.8 5.0 2.7 2 1 0 2 2 2 1 NusA N-terminal domain KH_5 PF13184.1 gi|89257073|ref|YP_514435.1| - 2.1e-24 85.1 5.8 1.3e-22 79.3 0.1 3.4 3 0 0 3 3 3 2 NusA-like KH domain HHH_5 PF14520.1 gi|89257073|ref|YP_514435.1| - 3.6e-21 75.0 5.8 2.7e-10 40.2 0.2 3.0 2 0 0 2 2 2 2 Helix-hairpin-helix domain S1 PF00575.18 gi|89257073|ref|YP_514435.1| - 2.4e-08 33.9 1.4 4.9e-08 32.9 0.1 2.2 2 0 0 2 2 2 1 S1 RNA binding domain RNA_pol_A_CTD PF03118.10 gi|89257073|ref|YP_514435.1| - 2.4e-07 30.0 7.7 4.3e-05 22.8 0.3 3.7 3 0 0 3 3 3 2 Bacterial RNA polymerase, alpha chain C terminal domain KH_2 PF07650.12 gi|89257073|ref|YP_514435.1| - 0.0035 16.8 1.8 0.01 15.3 0.0 2.7 3 0 0 3 3 3 1 KH domain DUF4332 PF14229.1 gi|89257073|ref|YP_514435.1| - 0.011 15.6 0.3 7.9 6.4 0.0 2.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4332) KH_1 PF00013.24 gi|89257073|ref|YP_514435.1| - 0.015 14.8 0.1 1.3 8.7 0.0 3.1 2 0 0 2 2 2 0 KH domain HATPase_c_3 PF13589.1 gi|89257073|ref|YP_514435.1| - 0.02 14.5 0.0 0.071 12.7 0.0 1.9 2 0 0 2 2 2 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S1_2 PF13509.1 gi|89257073|ref|YP_514435.1| - 0.036 13.9 0.0 0.092 12.6 0.0 1.8 1 0 0 1 1 1 0 S1 domain HhH-GPD PF00730.20 gi|89257073|ref|YP_514435.1| - 0.04 14.2 0.1 5.4 7.3 0.0 2.7 1 1 1 2 2 2 0 HhH-GPD superfamily base excision DNA repair protein SAM_2 PF07647.12 gi|89257073|ref|YP_514435.1| - 0.055 13.3 1.0 1.5 8.7 0.1 2.7 2 0 0 2 2 2 0 SAM domain (Sterile alpha motif) HHH_2 PF12826.2 gi|89257073|ref|YP_514435.1| - 0.058 13.2 3.6 0.31 10.9 0.1 2.8 2 0 0 2 2 2 0 Helix-hairpin-helix motif DUF150 PF02576.12 gi|89257074|ref|YP_514436.1| - 1.2e-36 125.3 0.1 1.4e-36 125.1 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised BCR, YhbC family COG0779 URO-D PF01208.12 gi|89257075|ref|YP_514437.1| - 1.2e-119 399.2 0.0 1.3e-119 399.1 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) XPC-binding PF09280.6 gi|89257075|ref|YP_514437.1| - 4.1e-05 22.9 0.1 9.7e-05 21.7 0.1 1.6 1 0 0 1 1 1 1 XPC-binding domain DDE_3 PF13358.1 gi|89257076|ref|YP_514438.1| - 5.3e-31 107.3 0.0 9e-31 106.5 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.11 gi|89257076|ref|YP_514438.1| - 1.6e-07 31.0 0.2 1.1e-06 28.3 0.1 2.1 2 0 0 2 2 2 1 Transposase DDE_1 PF03184.14 gi|89257076|ref|YP_514438.1| - 6e-07 28.8 0.1 9.5e-07 28.1 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_28 PF13518.1 gi|89257076|ref|YP_514438.1| - 0.00058 19.8 0.0 0.0018 18.2 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain rve PF00665.21 gi|89257076|ref|YP_514438.1| - 0.00072 19.6 0.0 0.0013 18.7 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.1 gi|89257076|ref|YP_514438.1| - 0.0087 15.6 0.0 0.029 14.0 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.1 gi|89257076|ref|YP_514438.1| - 0.02 15.0 0.0 0.032 14.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix DDE_Tnp_ISAZ013 PF07592.6 gi|89257076|ref|YP_514438.1| - 0.041 12.6 0.7 0.32 9.7 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain CENP-B_N PF04218.8 gi|89257076|ref|YP_514438.1| - 0.069 12.5 0.0 0.7 9.3 0.0 2.5 3 0 0 3 3 3 0 CENP-B N-terminal DNA-binding domain Oxidored_q1 PF00361.15 gi|89257077|ref|YP_514439.1| - 3.9e-65 219.7 27.1 3.9e-65 219.7 18.8 2.7 3 0 0 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1 PF00361.15 gi|89257078|ref|YP_514440.1| - 1e-66 224.9 24.9 1e-66 224.9 17.3 3.3 2 1 1 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains DUF2273 PF10031.4 gi|89257078|ref|YP_514440.1| - 0.017 14.7 0.5 0.017 14.7 0.3 5.5 6 0 0 6 6 6 0 Small integral membrane protein (DUF2273) Oxidored_q1 PF00361.15 gi|89257079|ref|YP_514441.1| - 5.4e-79 265.2 21.5 5.4e-79 265.2 14.9 3.7 4 1 0 4 4 4 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|89257079|ref|YP_514441.1| - 2e-16 59.2 4.0 2e-16 59.2 2.8 3.9 3 0 0 3 3 3 2 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q2 PF00420.19 gi|89257080|ref|YP_514442.1| - 3.2e-23 81.1 11.9 3.6e-23 80.9 8.3 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Herpes_LMP1 PF05297.6 gi|89257080|ref|YP_514442.1| - 0.0016 17.4 7.7 0.0018 17.2 5.3 1.0 1 0 0 1 1 1 1 Herpesvirus latent membrane protein 1 (LMP1) PepSY_TM_3 PF13706.1 gi|89257080|ref|YP_514442.1| - 0.081 12.3 0.9 0.081 12.3 0.6 2.5 3 0 0 3 3 3 0 PepSY-associated TM helix CbiQ PF02361.11 gi|89257080|ref|YP_514442.1| - 0.09 12.3 9.0 0.097 12.2 6.3 1.1 1 0 0 1 1 1 0 Cobalt transport protein Oxidored_q3 PF00499.15 gi|89257081|ref|YP_514443.1| - 1e-19 70.7 27.8 1.2e-19 70.4 19.3 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Fer4 PF00037.22 gi|89257082|ref|YP_514444.1| - 1e-12 47.0 13.5 8.3e-07 28.3 1.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|89257082|ref|YP_514444.1| - 6.3e-12 45.3 25.3 2.8e-07 30.4 6.8 1.9 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|89257082|ref|YP_514444.1| - 6.5e-12 45.6 7.4 9.8e-12 45.0 5.2 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|89257082|ref|YP_514444.1| - 1.6e-10 40.6 7.1 2.7e-10 39.8 4.9 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|89257082|ref|YP_514444.1| - 1.2e-08 35.0 8.8 3.1e-08 33.7 6.1 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|89257082|ref|YP_514444.1| - 1.7e-08 33.8 11.6 0.00012 21.7 2.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|89257082|ref|YP_514444.1| - 5.2e-08 33.1 7.4 0.00019 21.8 0.4 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|89257082|ref|YP_514444.1| - 1.1e-07 31.6 9.1 0.00035 20.6 0.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|89257082|ref|YP_514444.1| - 1.4e-07 32.1 16.1 1.5e-05 25.6 6.1 2.2 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|89257082|ref|YP_514444.1| - 5.2e-07 29.4 22.5 5.3e-05 22.9 8.3 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|89257082|ref|YP_514444.1| - 1e-06 28.9 28.2 0.00011 22.4 7.1 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|89257082|ref|YP_514444.1| - 3.3e-05 23.5 15.3 0.0038 17.0 2.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.2 gi|89257082|ref|YP_514444.1| - 0.005 17.3 16.3 0.013 15.9 2.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain c-SKI_SMAD_bind PF08782.5 gi|89257082|ref|YP_514444.1| - 0.01 15.9 3.9 0.043 13.9 0.0 2.2 1 1 1 2 2 2 0 c-SKI Smad4 binding domain Fer4_15 PF13459.1 gi|89257082|ref|YP_514444.1| - 0.016 15.7 11.2 0.68 10.5 1.1 2.7 2 1 0 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|89257082|ref|YP_514444.1| - 0.046 14.1 13.7 0.08 13.3 1.5 2.9 2 1 1 3 3 3 0 4Fe-4S single cluster domain NADHdh PF00146.16 gi|89257083|ref|YP_514445.1| - 4e-120 400.5 20.8 4.7e-120 400.3 14.4 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Molybdopterin PF00384.17 gi|89257084|ref|YP_514446.1| - 6.8e-37 127.2 0.3 4.2e-36 124.6 0.2 2.1 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Fer2_4 PF13510.1 gi|89257084|ref|YP_514446.1| - 1.5e-19 69.5 0.0 2.9e-19 68.6 0.0 1.5 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain NADH-G_4Fe-4S_3 PF10588.4 gi|89257084|ref|YP_514446.1| - 8e-19 66.6 0.5 2.2e-18 65.1 0.1 2.0 2 0 0 2 2 2 1 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Fer2 PF00111.22 gi|89257084|ref|YP_514446.1| - 4.5e-07 29.5 0.8 9.6e-07 28.4 0.1 1.9 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4 PF00037.22 gi|89257084|ref|YP_514446.1| - 0.079 12.5 1.1 2.2 8.0 0.2 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.2 gi|89257084|ref|YP_514446.1| - 0.23 11.4 2.2 0.41 10.5 0.5 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Complex1_51K PF01512.12 gi|89257085|ref|YP_514447.1| - 1.3e-44 151.5 0.0 1.9e-44 151.0 0.0 1.2 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit NADH_4Fe-4S PF10589.4 gi|89257085|ref|YP_514447.1| - 4.7e-20 70.4 0.3 9.3e-20 69.5 0.2 1.5 1 0 0 1 1 1 1 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region SLBB PF10531.4 gi|89257085|ref|YP_514447.1| - 1.3e-09 37.7 0.0 3.2e-09 36.5 0.0 1.7 1 0 0 1 1 1 1 SLBB domain 2Fe-2S_thioredx PF01257.14 gi|89257086|ref|YP_514448.1| - 5.2e-50 168.8 0.3 5.8e-50 168.6 0.2 1.0 1 0 0 1 1 1 1 Thioredoxin-like [2Fe-2S] ferredoxin Complex1_49kDa PF00346.14 gi|89257087|ref|YP_514449.1| - 9.6e-106 352.7 0.0 6e-88 294.3 0.0 2.1 2 0 0 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.14 gi|89257087|ref|YP_514449.1| - 0.036 12.8 0.0 0.12 11.1 0.0 1.8 1 1 1 2 2 2 0 Nickel-dependent hydrogenase Complex1_30kDa PF00329.14 gi|89257088|ref|YP_514450.1| - 1.8e-30 105.1 0.1 7e-28 96.8 0.0 2.2 1 1 0 2 2 2 2 Respiratory-chain NADH dehydrogenase, 30 Kd subunit DUF2087 PF09860.4 gi|89257088|ref|YP_514450.1| - 0.0022 17.7 0.0 0.0051 16.5 0.0 1.5 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2087) Oxidored_q6 PF01058.17 gi|89257089|ref|YP_514451.1| - 1.5e-23 82.8 0.2 1.8e-23 82.5 0.1 1.1 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Oxidored_q4 PF00507.14 gi|89257090|ref|YP_514452.1| - 1.2e-29 102.0 4.2 2.3e-29 101.1 2.9 1.5 1 1 1 2 2 2 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 YrvL PF14184.1 gi|89257090|ref|YP_514452.1| - 0.087 12.6 0.1 0.087 12.6 0.1 2.4 2 1 0 2 2 2 0 Regulatory protein YrvL Sex_peptide PF08138.6 gi|89257090|ref|YP_514452.1| - 6.7 6.6 5.4 9.3 6.1 0.2 3.0 3 1 0 3 3 3 0 Sex peptide (SP) family FUR PF01475.14 gi|89257091|ref|YP_514453.1| - 1.3e-38 131.6 0.1 1.5e-38 131.4 0.1 1.1 1 0 0 1 1 1 1 Ferric uptake regulator family Arg_repressor PF01316.16 gi|89257091|ref|YP_514453.1| - 0.0045 16.5 0.3 1.1 8.8 0.0 2.6 2 1 1 3 3 3 2 Arginine repressor, DNA binding domain IucA_IucC PF04183.7 gi|89257092|ref|YP_514454.1| - 2e-58 197.5 0.0 4.3e-58 196.5 0.0 1.6 1 0 0 1 1 1 1 IucA / IucC family FhuF PF06276.7 gi|89257092|ref|YP_514454.1| - 1.7e-29 102.8 0.4 8.6e-29 100.5 0.0 2.0 2 0 0 2 2 2 1 Ferric iron reductase FhuF-like transporter MFS_1 PF07690.11 gi|89257093|ref|YP_514455.1| - 1.7e-42 145.4 45.3 1.9e-31 109.0 17.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Folate_carrier PF01770.13 gi|89257093|ref|YP_514455.1| - 0.00011 20.8 9.1 0.00011 20.8 6.3 2.8 2 2 1 3 3 3 1 Reduced folate carrier BT1 PF03092.11 gi|89257093|ref|YP_514455.1| - 0.46 9.1 22.1 2.6 6.6 15.2 2.1 1 1 0 1 1 1 0 BT1 family PufQ PF05398.6 gi|89257093|ref|YP_514455.1| - 3.2 7.8 10.0 0.19 11.7 0.2 3.3 3 0 0 3 3 3 0 PufQ cytochrome subunit Orn_Arg_deC_N PF02784.11 gi|89257094|ref|YP_514456.1| - 3.3e-32 111.6 0.0 4e-32 111.3 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.17 gi|89257094|ref|YP_514456.1| - 1.4e-11 44.1 0.0 2.6e-11 43.2 0.0 1.5 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain MFS_1 PF07690.11 gi|89257095|ref|YP_514457.1| - 2.1e-34 118.8 47.3 2.1e-34 118.8 32.8 2.0 1 1 1 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|89257095|ref|YP_514457.1| - 3.3e-10 39.1 47.9 2.1e-07 29.9 33.2 2.0 1 1 0 1 1 1 1 Sugar (and other) transporter MFS_2 PF13347.1 gi|89257095|ref|YP_514457.1| - 6.3e-07 28.1 39.3 5.7e-05 21.6 15.2 3.0 1 1 2 3 3 3 2 MFS/sugar transport protein MFS_3 PF05977.8 gi|89257095|ref|YP_514457.1| - 0.0029 15.8 17.2 0.0055 14.8 11.7 1.5 1 1 0 1 1 1 1 Transmembrane secretion effector DUF3573 PF12097.3 gi|89257096|ref|YP_514458.1| - 2.7e-181 602.3 29.9 3.8e-181 601.8 20.7 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3573) Lipase_GDSL PF00657.17 gi|89257098|ref|YP_514460.1| - 0.00019 21.3 0.0 0.00023 21.0 0.0 1.2 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase Lipase_GDSL PF00657.17 gi|89257099|ref|YP_514461.1| - 1.1e-10 41.6 0.1 1.5e-10 41.2 0.1 1.1 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase GatB_N PF02934.10 gi|89257101|ref|YP_514463.1| - 1.1e-117 392.0 0.0 1.5e-117 391.6 0.0 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|89257101|ref|YP_514463.1| - 7.7e-40 136.0 2.9 1.4e-39 135.1 2.0 1.5 1 0 0 1 1 1 1 GatB domain DUF2003 PF09404.5 gi|89257101|ref|YP_514463.1| - 0.012 14.1 0.0 0.018 13.4 0.0 1.2 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF2003) Amidase PF01425.16 gi|89257102|ref|YP_514464.1| - 1.6e-140 468.8 0.1 1.8e-140 468.6 0.1 1.0 1 0 0 1 1 1 1 Amidase SHOCT PF09851.4 gi|89257102|ref|YP_514464.1| - 0.092 12.2 1.7 0.093 12.2 0.0 1.9 2 0 0 2 2 2 0 Short C-terminal domain Glu-tRNAGln PF02686.10 gi|89257103|ref|YP_514465.1| - 6.9e-15 54.6 0.2 8.5e-15 54.3 0.1 1.1 1 0 0 1 1 1 1 Glu-tRNAGln amidotransferase C subunit YcbB PF08664.5 gi|89257103|ref|YP_514465.1| - 0.12 12.1 0.0 0.16 11.7 0.0 1.2 1 0 0 1 1 1 0 YcbB domain HlyD_3 PF13437.1 gi|89257104|ref|YP_514466.1| - 5.3e-06 26.7 0.1 2.5e-05 24.5 0.0 2.0 1 1 0 1 1 1 1 HlyD family secretion protein Biotin_lipoyl_2 PF13533.1 gi|89257105|ref|YP_514467.1| - 1.8e-10 40.2 1.8 2.1e-10 40.1 0.1 2.0 2 1 0 2 2 2 1 Biotin-lipoyl like HlyD_2 PF12700.2 gi|89257105|ref|YP_514467.1| - 3.8e-05 23.0 0.8 5e-05 22.6 0.6 1.1 1 0 0 1 1 1 1 HlyD family secretion protein HlyD PF00529.15 gi|89257105|ref|YP_514467.1| - 0.0016 17.8 0.4 0.0044 16.3 0.3 1.8 1 1 0 1 1 1 1 HlyD family secretion protein Biotin_lipoyl PF00364.17 gi|89257105|ref|YP_514467.1| - 0.0022 17.5 0.0 0.0056 16.2 0.0 1.7 1 0 0 1 1 1 1 Biotin-requiring enzyme HlyD_3 PF13437.1 gi|89257105|ref|YP_514467.1| - 0.0054 17.0 0.1 0.015 15.6 0.0 1.8 1 1 1 2 2 2 1 HlyD family secretion protein PYNP_C PF07831.8 gi|89257105|ref|YP_514467.1| - 0.062 12.7 0.2 0.44 10.0 0.0 2.1 2 0 0 2 2 2 0 Pyrimidine nucleoside phosphorylase C-terminal domain O-antigen_lig PF13425.1 gi|89257105|ref|YP_514467.1| - 0.11 12.5 0.1 0.15 12.0 0.0 1.2 1 0 0 1 1 1 0 O-antigen ligase like membrane protein TPR_MLP1_2 PF07926.7 gi|89257105|ref|YP_514467.1| - 0.18 11.5 3.2 0.26 11.0 2.2 1.2 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein Methyltransf_4 PF02390.12 gi|89257106|ref|YP_514468.1| - 0.098 11.6 0.3 0.17 10.8 0.2 1.4 1 0 0 1 1 1 0 Putative methyltransferase FUSC-like PF12805.2 gi|89257107|ref|YP_514469.1| - 0.18 10.6 0.0 0.18 10.6 0.0 2.1 2 0 0 2 2 2 0 FUSC-like inner membrane protein yccS DUF4231 PF14015.1 gi|89257108|ref|YP_514470.1| - 0.42 10.6 3.4 0.52 10.3 2.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4231) DUF4083 PF13314.1 gi|89257108|ref|YP_514470.1| - 4.5 7.1 8.0 24 4.8 1.8 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4083) Lyase_1 PF00206.15 gi|89257110|ref|YP_514472.1| - 5.7e-40 137.4 0.0 7.8e-40 136.9 0.0 1.2 1 0 0 1 1 1 1 Lyase ADSL_C PF10397.4 gi|89257110|ref|YP_514472.1| - 0.096 12.7 0.0 0.24 11.4 0.0 1.7 1 0 0 1 1 1 0 Adenylosuccinate lyase C-terminus DDE_Tnp_1_2 PF13586.1 gi|89257111|ref|YP_514473.1| - 4.5e-16 58.8 0.1 1.3e-15 57.3 0.1 1.8 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|89257111|ref|YP_514473.1| - 2.5e-13 50.0 1.1 8.7e-13 48.3 0.7 1.7 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|89257111|ref|YP_514473.1| - 2.2e-09 37.2 0.1 3e-09 36.8 0.1 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF4096 PF13340.1 gi|89257111|ref|YP_514473.1| - 0.00059 19.6 0.0 0.0012 18.6 0.0 1.5 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) Aldose_epim PF01263.15 gi|89257114|ref|YP_514476.1| - 7.9e-19 67.8 0.0 9.2e-19 67.6 0.0 1.1 1 0 0 1 1 1 1 Aldose 1-epimerase GATase_5 PF13507.1 gi|89257115|ref|YP_514477.1| - 8e-98 326.4 0.1 1.3e-97 325.8 0.1 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain AIRS_C PF02769.17 gi|89257115|ref|YP_514477.1| - 2.5e-41 141.2 0.6 2.9e-24 85.8 0.0 2.5 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|89257115|ref|YP_514477.1| - 2.4e-27 94.9 1.2 2.8e-26 91.6 0.0 3.0 3 0 0 3 3 3 1 AIR synthase related protein, N-terminal domain GATase_2 PF00310.16 gi|89257116|ref|YP_514478.1| - 2.1e-23 82.6 0.0 9.5e-19 67.3 0.0 2.4 1 1 1 2 2 2 2 Glutamine amidotransferases class-II GATase_6 PF13522.1 gi|89257116|ref|YP_514478.1| - 2e-17 63.4 0.0 3.4e-17 62.6 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain Pribosyltran PF00156.22 gi|89257116|ref|YP_514478.1| - 5.7e-17 61.6 0.2 3e-16 59.2 0.2 2.0 2 0 0 2 2 2 1 Phosphoribosyl transferase domain GATase_7 PF13537.1 gi|89257116|ref|YP_514478.1| - 7.9e-15 54.6 0.0 1.7e-14 53.6 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.1 gi|89257116|ref|YP_514478.1| - 2e-05 23.4 0.0 3.1e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II UPRTase PF14681.1 gi|89257116|ref|YP_514478.1| - 0.17 11.0 0.0 0.33 10.1 0.0 1.4 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase Pyridoxal_deC PF00282.14 gi|89257118|ref|YP_514480.1| - 7.7e-68 228.6 0.0 6.5e-67 225.5 0.0 1.9 1 1 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.14 gi|89257118|ref|YP_514480.1| - 0.0067 15.2 0.0 0.0093 14.7 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V ACPS PF01648.15 gi|89257119|ref|YP_514481.1| - 4.4e-12 45.8 0.0 7.1e-12 45.1 0.0 1.4 1 0 0 1 1 1 1 4'-phosphopantetheinyl transferase superfamily OEP PF02321.13 gi|89257120|ref|YP_514482.1| - 3e-37 128.0 30.1 3e-19 69.3 5.6 2.1 2 0 0 2 2 2 2 Outer membrane efflux protein PCMT PF01135.14 gi|89257121|ref|YP_514483.1| - 5.5e-17 61.9 0.0 6.9e-17 61.6 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.9 gi|89257121|ref|YP_514483.1| - 0.0022 17.3 0.1 0.011 15.1 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|89257121|ref|YP_514483.1| - 0.017 14.6 0.1 0.023 14.3 0.1 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_25 PF13649.1 gi|89257121|ref|YP_514483.1| - 0.031 14.6 0.0 0.053 13.8 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Peptidase_U32 PF01136.14 gi|89257122|ref|YP_514484.1| - 7.3e-93 309.7 0.1 5.4e-92 306.9 0.0 2.0 2 0 0 2 2 2 1 Peptidase family U32 Tachystatin_B PF11478.3 gi|89257122|ref|YP_514484.1| - 0.019 14.6 2.0 0.044 13.5 1.4 1.6 1 0 0 1 1 1 0 Antimicrobial chitin binding protein tachystatin B MFS_1 PF07690.11 gi|89257123|ref|YP_514485.1| - 6.8e-42 143.4 54.4 6.8e-42 143.4 37.7 1.8 1 1 1 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|89257123|ref|YP_514485.1| - 1.2e-14 53.8 15.1 1.2e-14 53.8 10.5 3.4 1 1 1 2 2 2 1 Sugar (and other) transporter MFS_2 PF13347.1 gi|89257123|ref|YP_514485.1| - 7.3e-06 24.6 37.5 2e-05 23.1 16.7 3.0 1 1 2 3 3 3 2 MFS/sugar transport protein CitMHS PF03600.11 gi|89257124|ref|YP_514486.1| - 1.1e-35 122.8 35.3 1.1e-35 122.8 24.4 2.7 1 1 1 2 2 2 2 Citrate transporter AA_permease_2 PF13520.1 gi|89257125|ref|YP_514487.1| - 1.4e-33 116.1 54.9 1.8e-33 115.7 38.1 1.2 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|89257125|ref|YP_514487.1| - 4e-10 38.6 47.5 9e-10 37.4 32.9 1.5 1 1 0 1 1 1 1 Amino acid permease K_trans PF02705.11 gi|89257125|ref|YP_514487.1| - 0.007 14.7 29.6 0.024 13.0 2.5 2.6 3 0 0 3 3 3 2 K+ potassium transporter Chordopox_A13L PF05961.6 gi|89257125|ref|YP_514487.1| - 0.068 13.1 4.0 3.9 7.4 0.1 3.0 2 0 0 2 2 2 0 Chordopoxvirus A13L protein GTP1_OBG PF01018.17 gi|89257126|ref|YP_514488.1| - 1.6e-61 206.5 3.8 2.4e-61 205.9 2.7 1.3 1 0 0 1 1 1 1 GTP1/OBG MMR_HSR1 PF01926.18 gi|89257126|ref|YP_514488.1| - 1.9e-19 69.7 0.0 3.2e-19 68.9 0.0 1.3 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|89257126|ref|YP_514488.1| - 1.5e-08 34.0 0.1 5.7e-08 32.1 0.0 1.9 1 1 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|89257126|ref|YP_514488.1| - 0.0011 18.4 0.1 0.052 12.9 0.1 2.2 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain cobW PF02492.14 gi|89257126|ref|YP_514488.1| - 0.003 17.0 0.0 0.13 11.6 0.0 2.2 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain PduV-EutP PF10662.4 gi|89257126|ref|YP_514488.1| - 0.007 15.8 0.0 0.1 12.0 0.0 2.1 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation ArgK PF03308.11 gi|89257126|ref|YP_514488.1| - 0.0092 14.7 0.0 1.1 7.9 0.0 2.2 2 0 0 2 2 2 2 ArgK protein ATP_bind_1 PF03029.12 gi|89257126|ref|YP_514488.1| - 0.013 15.0 0.0 2.7 7.4 0.0 2.3 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein ABC_tran PF00005.22 gi|89257126|ref|YP_514488.1| - 0.041 14.1 0.0 0.098 12.9 0.0 1.6 1 0 0 1 1 1 0 ABC transporter Arf PF00025.16 gi|89257126|ref|YP_514488.1| - 0.048 12.8 0.0 1.4 8.1 0.0 2.1 2 0 0 2 2 2 0 ADP-ribosylation factor family Miro PF08477.8 gi|89257126|ref|YP_514488.1| - 0.051 14.0 0.0 0.089 13.2 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein Trp_Tyr_perm PF03222.8 gi|89257127|ref|YP_514489.1| - 2.8e-80 270.0 38.4 3.3e-80 269.8 26.6 1.0 1 0 0 1 1 1 1 Tryptophan/tyrosine permease family AA_permease_2 PF13520.1 gi|89257127|ref|YP_514489.1| - 2.5e-06 26.3 52.6 3e-05 22.7 36.4 2.0 1 1 0 1 1 1 1 Amino acid permease Aa_trans PF01490.13 gi|89257127|ref|YP_514489.1| - 0.00021 19.9 27.7 0.00021 19.9 19.2 2.2 2 0 0 2 2 2 1 Transmembrane amino acid transporter protein AA_permease PF00324.16 gi|89257127|ref|YP_514489.1| - 3.8 5.7 47.1 0.012 13.9 25.6 1.9 2 1 0 2 2 2 0 Amino acid permease OMP_b-brl PF13505.1 gi|89257128|ref|YP_514490.1| - 0.0012 18.7 6.1 0.0026 17.7 4.2 1.6 1 1 0 1 1 1 1 Outer membrane protein beta-barrel domain HATPase_c PF02518.21 gi|89257129|ref|YP_514491.1| - 1.2e-20 73.2 0.0 1.9e-20 72.6 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|89257129|ref|YP_514491.1| - 8.1e-12 44.9 0.0 2.2e-11 43.6 0.0 1.8 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.1 gi|89257129|ref|YP_514491.1| - 7e-06 25.6 0.5 2e-05 24.1 0.0 2.0 2 0 0 2 2 2 1 GHKL domain DUF4118 PF13493.1 gi|89257129|ref|YP_514491.1| - 0.00015 21.9 12.2 0.00032 20.8 8.5 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4118) HATPase_c_3 PF13589.1 gi|89257129|ref|YP_514491.1| - 0.00087 18.9 0.1 0.0017 17.9 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KdpD PF02702.12 gi|89257130|ref|YP_514492.1| - 6e-84 280.3 1.0 9.1e-84 279.8 0.7 1.3 1 0 0 1 1 1 1 Osmosensitive K+ channel His kinase sensor domain AAA_18 PF13238.1 gi|89257130|ref|YP_514492.1| - 0.026 14.8 0.1 0.11 12.8 0.1 2.1 1 1 0 1 1 1 0 AAA domain ResIII PF04851.10 gi|89257130|ref|YP_514492.1| - 0.026 14.3 0.1 0.12 12.1 0.0 2.0 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_22 PF13401.1 gi|89257130|ref|YP_514492.1| - 0.11 12.6 0.0 0.26 11.4 0.0 1.7 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|89257130|ref|YP_514492.1| - 0.13 11.9 0.5 12 5.5 0.2 2.5 1 1 1 2 2 2 0 NTPase AAA_30 PF13604.1 gi|89257130|ref|YP_514492.1| - 0.15 11.5 0.0 0.31 10.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain KdpC PF02669.10 gi|89257131|ref|YP_514493.1| - 2.2e-35 122.0 1.8 2.5e-35 121.8 1.2 1.0 1 0 0 1 1 1 1 K+-transporting ATPase, c chain 4HB_MCP_1 PF12729.2 gi|89257131|ref|YP_514493.1| - 0.01 15.2 0.0 0.019 14.2 0.0 1.5 1 0 0 1 1 1 0 Four helix bundle sensory module for signal transduction DUF1270 PF06900.6 gi|89257131|ref|YP_514493.1| - 0.11 12.6 1.1 0.21 11.7 0.8 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1270) Hydrolase PF00702.21 gi|89257132|ref|YP_514494.1| - 9.1e-28 98.1 1.0 1.3e-27 97.5 0.7 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|89257132|ref|YP_514494.1| - 1.2e-10 41.8 0.0 1.9e-10 41.2 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|89257132|ref|YP_514494.1| - 1.3e-06 28.2 1.0 0.00037 20.1 0.3 2.2 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase E1-E2_ATPase PF00122.15 gi|89257133|ref|YP_514495.1| - 1e-22 80.3 8.0 5.9e-18 64.7 0.1 2.1 1 1 1 2 2 2 2 E1-E2 ATPase Hydrolase PF00702.21 gi|89257133|ref|YP_514495.1| - 0.0011 19.4 0.0 0.0021 18.5 0.0 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase YrvL PF14184.1 gi|89257133|ref|YP_514495.1| - 0.078 12.7 0.1 0.078 12.7 0.1 2.2 2 0 0 2 2 2 0 Regulatory protein YrvL Yip1 PF04893.12 gi|89257133|ref|YP_514495.1| - 1.4 8.4 14.1 0.081 12.4 3.1 2.1 2 0 0 2 2 2 0 Yip1 domain EBP PF05241.7 gi|89257133|ref|YP_514495.1| - 1.8 7.5 6.7 1 8.3 0.6 2.5 2 1 0 2 2 2 0 Emopamil binding protein KdpA PF03814.10 gi|89257134|ref|YP_514496.1| - 3.4e-207 688.8 37.7 4.1e-207 688.5 26.1 1.0 1 0 0 1 1 1 1 Potassium-transporting ATPase A subunit DUF2631 PF10939.3 gi|89257134|ref|YP_514496.1| - 2.1 8.2 6.2 0.48 10.3 0.7 2.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2631) 2-Hacid_dh_C PF02826.14 gi|89257136|ref|YP_514498.1| - 5.6e-18 64.7 0.0 1e-17 63.8 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DDE_Tnp_1_2 PF13586.1 gi|89257136|ref|YP_514498.1| - 6.9e-16 58.2 0.1 2.1e-15 56.6 0.1 1.9 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|89257136|ref|YP_514498.1| - 4.5e-13 49.2 0.9 1.5e-12 47.5 0.6 1.8 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|89257136|ref|YP_514498.1| - 3.2e-09 36.6 0.4 5.3e-09 35.9 0.1 1.5 2 0 0 2 2 2 1 Transposase DDE domain DUF4096 PF13340.1 gi|89257136|ref|YP_514498.1| - 0.00079 19.2 0.0 0.0016 18.2 0.0 1.5 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) DDE_3 PF13358.1 gi|89257137|ref|YP_514499.1| - 1.1e-30 106.2 0.0 2e-30 105.4 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.11 gi|89257137|ref|YP_514499.1| - 1.4e-07 31.2 0.2 9.5e-07 28.5 0.1 2.1 2 0 0 2 2 2 1 Transposase DDE_1 PF03184.14 gi|89257137|ref|YP_514499.1| - 7e-07 28.6 0.1 1.1e-06 27.9 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_28 PF13518.1 gi|89257137|ref|YP_514499.1| - 0.00051 19.9 0.0 0.0017 18.3 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain rve PF00665.21 gi|89257137|ref|YP_514499.1| - 0.00067 19.7 0.0 0.0012 18.9 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.1 gi|89257137|ref|YP_514499.1| - 0.0076 15.8 0.0 0.027 14.1 0.0 2.0 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.1 gi|89257137|ref|YP_514499.1| - 0.018 15.1 0.0 0.029 14.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix DDE_Tnp_ISAZ013 PF07592.6 gi|89257137|ref|YP_514499.1| - 0.046 12.4 0.6 0.42 9.2 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain Iso_dh PF00180.15 gi|89257138|ref|YP_514500.1| - 1.3e-54 185.4 0.1 1.5e-54 185.3 0.1 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Aconitase_C PF00694.14 gi|89257139|ref|YP_514501.1| - 1.4e-28 99.6 0.0 2.2e-28 98.9 0.0 1.4 1 0 0 1 1 1 1 Aconitase C-terminal domain Aconitase_2_N PF06434.8 gi|89257139|ref|YP_514501.1| - 0.0026 17.2 0.0 0.027 13.8 0.0 2.0 1 1 0 1 1 1 1 Aconitate hydratase 2 N-terminus MTTB PF06253.6 gi|89257139|ref|YP_514501.1| - 0.01 13.6 0.0 0.013 13.3 0.0 1.1 1 0 0 1 1 1 0 Trimethylamine methyltransferase (MTTB) Aconitase PF00330.15 gi|89257140|ref|YP_514502.1| - 2.3e-148 494.5 0.4 2.6e-148 494.3 0.3 1.0 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) DUF521 PF04412.8 gi|89257140|ref|YP_514502.1| - 0.038 12.5 0.0 0.055 12.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF521) DDE_3 PF13358.1 gi|89257141|ref|YP_514503.1| - 1.7e-31 108.9 0.0 2.8e-31 108.2 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.11 gi|89257141|ref|YP_514503.1| - 1.5e-07 31.0 0.2 1.1e-06 28.3 0.1 2.1 2 0 0 2 2 2 1 Transposase DDE_1 PF03184.14 gi|89257141|ref|YP_514503.1| - 5.8e-07 28.8 0.1 9.5e-07 28.1 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_28 PF13518.1 gi|89257141|ref|YP_514503.1| - 0.00058 19.8 0.0 0.0018 18.2 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain rve PF00665.21 gi|89257141|ref|YP_514503.1| - 0.00072 19.6 0.0 0.0013 18.7 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.1 gi|89257141|ref|YP_514503.1| - 0.0087 15.6 0.0 0.029 14.0 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.1 gi|89257141|ref|YP_514503.1| - 0.02 15.0 0.0 0.032 14.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix DDE_Tnp_ISAZ013 PF07592.6 gi|89257141|ref|YP_514503.1| - 0.039 12.6 0.6 0.32 9.7 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain Gly_transf_sug PF04488.10 gi|89257142|ref|YP_514504.1| - 1.3e-08 35.1 0.6 1.3e-08 35.1 0.4 3.0 2 2 0 3 3 3 1 Glycosyltransferase sugar-binding region containing DXD motif TcdA_TcdB PF12919.2 gi|89257142|ref|YP_514504.1| - 7.1e-08 31.3 1.5 7.1e-08 31.3 1.1 2.4 1 1 1 2 2 2 2 TcdA/TcdB catalytic glycosyltransferase domain DDE_Tnp_1_2 PF13586.1 gi|89257143|ref|YP_514505.1| - 4.9e-16 58.6 0.2 8.8e-16 57.8 0.1 1.5 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|89257143|ref|YP_514505.1| - 1.6e-13 50.7 1.4 5.6e-13 48.9 1.0 1.7 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|89257143|ref|YP_514505.1| - 1.5e-09 37.7 0.1 1.9e-09 37.4 0.1 1.1 1 0 0 1 1 1 1 Transposase DDE domain Lipocalin_2 PF08212.7 gi|89257145|ref|YP_514507.1| - 5.3e-42 142.9 0.3 6.1e-42 142.7 0.2 1.0 1 0 0 1 1 1 1 Lipocalin-like domain Lipocalin PF00061.18 gi|89257145|ref|YP_514507.1| - 1e-11 44.9 0.1 1.2e-11 44.7 0.1 1.1 1 0 0 1 1 1 1 Lipocalin / cytosolic fatty-acid binding protein family DNA_pol3_delta PF06144.8 gi|89257146|ref|YP_514508.1| - 4.4e-24 84.9 10.7 8.5e-24 83.9 7.4 1.5 1 0 0 1 1 1 1 DNA polymerase III, delta subunit DNA_pol3_delt_C PF14840.1 gi|89257146|ref|YP_514508.1| - 2.1e-05 24.6 0.2 6.1e-05 23.1 0.1 1.8 1 0 0 1 1 1 1 Processivity clamp loader gamma complex DNA pol III C-term Gln-synt_C PF00120.19 gi|89257147|ref|YP_514509.1| - 6.3e-47 159.8 0.0 8.2e-47 159.5 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.14 gi|89257147|ref|YP_514509.1| - 3.1e-21 74.7 0.0 5.3e-21 74.0 0.0 1.4 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain Glutaminase PF04960.10 gi|89257148|ref|YP_514510.1| - 2.1e-100 335.4 0.1 2.6e-100 335.0 0.1 1.1 1 0 0 1 1 1 1 Glutaminase Ank_4 PF13637.1 gi|89257148|ref|YP_514510.1| - 1.3e-19 70.1 1.5 1e-10 41.7 0.1 2.8 2 1 1 3 3 3 2 Ankyrin repeats (many copies) Ank_2 PF12796.2 gi|89257148|ref|YP_514510.1| - 4.4e-17 62.1 0.1 1.7e-16 60.3 0.0 2.0 2 0 0 2 2 2 1 Ankyrin repeats (3 copies) Ank PF00023.25 gi|89257148|ref|YP_514510.1| - 1.1e-13 50.2 0.1 8.2e-11 41.1 0.0 3.5 3 0 0 3 3 3 1 Ankyrin repeat Ank_3 PF13606.1 gi|89257148|ref|YP_514510.1| - 4e-13 48.2 0.2 2.4e-07 30.3 0.0 4.7 4 0 0 4 4 4 2 Ankyrin repeat Ank_5 PF13857.1 gi|89257148|ref|YP_514510.1| - 6.9e-13 48.3 0.2 3.5e-07 30.2 0.0 3.1 2 1 2 4 4 4 3 Ankyrin repeats (many copies) Transpeptidase PF00905.17 gi|89257148|ref|YP_514510.1| - 0.1 11.5 0.0 0.18 10.8 0.0 1.4 1 0 0 1 1 1 0 Penicillin binding protein transpeptidase domain Abi PF02517.11 gi|89257149|ref|YP_514511.1| - 3.2e-11 43.2 8.1 3.2e-11 43.2 5.6 3.5 2 1 1 3 3 3 1 CAAX protease self-immunity UPF0114 PF03350.11 gi|89257150|ref|YP_514512.1| - 2.6e-33 114.5 4.9 2.6e-33 114.5 3.4 1.7 2 0 0 2 2 2 1 Uncharacterized protein family, UPF0114 Mycobact_memb PF05423.8 gi|89257150|ref|YP_514512.1| - 0.03 14.0 0.4 0.042 13.5 0.3 1.2 1 0 0 1 1 1 0 Mycobacterium membrane protein DUF2069 PF09842.4 gi|89257150|ref|YP_514512.1| - 0.51 10.3 4.3 0.33 10.9 0.4 2.2 1 1 1 2 2 2 0 Predicted membrane protein (DUF2069) tRNA-synt_2 PF00152.15 gi|89257151|ref|YP_514513.1| - 1.6e-99 332.8 3.5 1.6e-99 332.8 2.4 1.8 2 0 0 2 2 2 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.20 gi|89257151|ref|YP_514513.1| - 2.7e-17 62.3 0.1 8.6e-17 60.7 0.0 1.9 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.15 gi|89257151|ref|YP_514513.1| - 0.00052 19.2 0.3 0.36 9.9 0.0 2.8 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) tRNA-synt_2b PF00587.20 gi|89257151|ref|YP_514513.1| - 0.017 14.7 0.5 3.3 7.2 0.0 2.6 2 0 0 2 2 2 0 tRNA synthetase class II core domain (G, H, P, S and T) ALS2CR8 PF15299.1 gi|89257151|ref|YP_514513.1| - 0.047 13.2 1.0 0.1 12.1 0.7 1.6 1 0 0 1 1 1 0 Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8 UvsW PF11637.3 gi|89257151|ref|YP_514513.1| - 0.049 13.3 1.5 0.095 12.3 0.0 2.3 2 0 0 2 2 2 0 ATP-dependant DNA helicase UvsW Med11 PF10280.4 gi|89257151|ref|YP_514513.1| - 0.15 12.1 3.7 0.33 11.0 2.6 1.6 1 0 0 1 1 1 0 Mediator complex protein FBP PF07299.6 gi|89257151|ref|YP_514513.1| - 0.21 10.8 4.2 0.6 9.4 1.3 2.5 2 0 0 2 2 2 0 Fibronectin-binding protein (FBP) RF-1 PF00472.15 gi|89257152|ref|YP_514514.1| - 3.3e-41 139.6 1.1 5.8e-41 138.8 0.7 1.4 1 0 0 1 1 1 1 RF-1 domain PCRF PF03462.13 gi|89257152|ref|YP_514514.1| - 7.9e-33 112.6 1.0 7.9e-33 112.6 0.7 2.2 2 0 0 2 2 2 1 PCRF domain MIR PF02815.14 gi|89257152|ref|YP_514514.1| - 0.0033 16.9 0.1 0.0054 16.2 0.1 1.4 1 0 0 1 1 1 1 MIR domain DNA_pol3_delta2 PF13177.1 gi|89257153|ref|YP_514515.1| - 4.5e-41 140.1 0.2 4.5e-41 140.1 0.1 2.5 2 1 0 2 2 1 1 DNA polymerase III, delta subunit DNA_pol3_gamma3 PF12169.3 gi|89257153|ref|YP_514515.1| - 3.3e-19 69.0 0.1 7.8e-19 67.8 0.1 1.6 1 0 0 1 1 1 1 DNA polymerase III subunits gamma and tau domain III AAA PF00004.24 gi|89257153|ref|YP_514515.1| - 1.1e-10 41.8 0.1 4.3e-10 39.8 0.0 2.1 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.7 gi|89257153|ref|YP_514515.1| - 2.7e-08 33.1 0.1 1.5e-06 27.4 0.1 3.0 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus TIP49 PF06068.8 gi|89257153|ref|YP_514515.1| - 7.9e-08 31.4 1.8 5.5e-06 25.3 0.9 2.9 2 1 0 2 2 2 1 TIP49 C-terminus AAA_22 PF13401.1 gi|89257153|ref|YP_514515.1| - 4.9e-06 26.7 0.2 2.3e-05 24.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|89257153|ref|YP_514515.1| - 8.3e-06 26.6 0.7 5.6e-05 23.9 0.0 2.7 2 1 1 3 3 3 1 AAA domain AAA_14 PF13173.1 gi|89257153|ref|YP_514515.1| - 2.5e-05 24.1 2.6 4.1e-05 23.4 0.0 2.8 2 2 1 3 3 3 1 AAA domain AAA_5 PF07728.9 gi|89257153|ref|YP_514515.1| - 9.8e-05 22.0 0.1 0.00059 19.5 0.1 2.4 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.1 gi|89257153|ref|YP_514515.1| - 0.00022 21.2 0.3 0.0017 18.4 0.1 2.4 2 1 1 3 3 3 1 AAA ATPase domain AAA_18 PF13238.1 gi|89257153|ref|YP_514515.1| - 0.00039 20.7 0.9 0.0014 18.9 0.0 2.5 2 1 0 2 2 2 1 AAA domain SKI PF01202.17 gi|89257153|ref|YP_514515.1| - 0.003 17.4 2.1 0.013 15.3 0.2 2.5 2 0 0 2 2 2 1 Shikimate kinase ResIII PF04851.10 gi|89257153|ref|YP_514515.1| - 0.011 15.5 9.5 0.23 11.2 0.1 3.4 2 2 1 4 4 4 0 Type III restriction enzyme, res subunit Mg_chelatase PF01078.16 gi|89257153|ref|YP_514515.1| - 0.044 12.9 0.1 0.12 11.5 0.0 1.8 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_28 PF13521.1 gi|89257153|ref|YP_514515.1| - 0.05 13.5 0.4 0.12 12.3 0.3 1.6 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|89257153|ref|YP_514515.1| - 0.052 13.1 0.0 0.27 10.8 0.0 2.1 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|89257153|ref|YP_514515.1| - 0.53 10.5 3.6 1.7 8.9 0.2 2.8 2 1 0 2 2 2 0 ABC transporter LpxC PF03331.8 gi|89257154|ref|YP_514516.1| - 1.4e-94 316.1 0.3 1.6e-94 315.9 0.2 1.0 1 0 0 1 1 1 1 UDP-3-O-acyl N-acetylglycosamine deacetylase DUF4269 PF14091.1 gi|89257154|ref|YP_514516.1| - 0.0089 15.9 0.0 0.019 14.8 0.0 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4269) FtsZ_C PF12327.3 gi|89257155|ref|YP_514517.1| - 2.5e-37 126.8 7.2 2.6e-37 126.7 3.6 2.2 2 0 0 2 2 2 1 FtsZ family, C-terminal domain Tubulin PF00091.20 gi|89257155|ref|YP_514517.1| - 2.9e-35 122.0 3.1 2e-34 119.3 2.1 2.1 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain dUTPase PF00692.14 gi|89257155|ref|YP_514517.1| - 0.063 12.7 0.7 0.63 9.4 0.1 2.2 2 0 0 2 2 2 0 dUTPase NmrA PF05368.8 gi|89257155|ref|YP_514517.1| - 0.077 12.2 0.9 0.54 9.4 0.3 2.3 1 1 1 2 2 2 0 NmrA-like family DUF2459 PF09601.5 gi|89257155|ref|YP_514517.1| - 0.17 11.5 0.0 0.31 10.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2459) FtsA PF14450.1 gi|89257156|ref|YP_514518.1| - 8.3e-44 148.2 9.2 2.3e-25 88.7 0.0 2.5 2 1 0 2 2 2 2 Cell division protein FtsA SHS2_FTSA PF02491.15 gi|89257156|ref|YP_514518.1| - 1.5e-20 72.8 2.3 2.4e-20 72.2 0.0 2.5 3 0 0 3 3 3 1 SHS2 domain inserted in FTSA MreB_Mbl PF06723.8 gi|89257156|ref|YP_514518.1| - 1.1e-16 60.3 0.4 5.2e-16 58.1 0.0 2.0 2 0 0 2 2 2 1 MreB/Mbl protein PilM_2 PF11104.3 gi|89257156|ref|YP_514518.1| - 1.3e-14 53.8 0.4 1.2e-12 47.4 0.0 2.3 2 0 0 2 2 2 2 Type IV pilus assembly protein PilM; FtsQ PF03799.10 gi|89257157|ref|YP_514519.1| - 1.5e-15 57.4 0.0 2.3e-15 56.8 0.0 1.3 1 0 0 1 1 1 1 Cell division protein FtsQ POTRA_1 PF08478.5 gi|89257157|ref|YP_514519.1| - 4.6e-05 23.3 0.2 9.4e-05 22.3 0.2 1.5 1 0 0 1 1 1 1 POTRA domain, FtsQ-type ABC2_membrane_3 PF12698.2 gi|89257157|ref|YP_514519.1| - 0.25 10.3 7.2 0.31 10.0 5.0 1.2 1 0 0 1 1 1 0 ABC-2 family transporter protein Vac7 PF12751.2 gi|89257157|ref|YP_514519.1| - 0.28 10.0 0.9 0.84 8.4 0.4 1.7 2 0 0 2 2 2 0 Vacuolar segregation subunit 7 Dala_Dala_lig_C PF07478.8 gi|89257158|ref|YP_514520.1| - 1.2e-49 168.4 0.0 1.7e-49 167.9 0.0 1.2 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp_4 PF13535.1 gi|89257158|ref|YP_514520.1| - 2.1e-19 69.9 0.0 2.9e-19 69.5 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_N PF01820.16 gi|89257158|ref|YP_514520.1| - 3e-19 69.4 0.1 5.2e-10 39.6 0.0 2.7 2 1 1 3 3 3 2 D-ala D-ala ligase N-terminus ATP-grasp_3 PF02655.9 gi|89257158|ref|YP_514520.1| - 1.4e-13 51.0 0.0 1.9e-13 50.6 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|89257158|ref|YP_514520.1| - 1.2e-11 44.3 0.0 1.6e-11 43.9 0.0 1.1 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain RimK PF08443.6 gi|89257158|ref|YP_514520.1| - 8.4e-09 35.1 0.0 2e-08 33.9 0.0 1.6 1 1 0 1 1 1 1 RimK-like ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|89257158|ref|YP_514520.1| - 5.7e-06 25.3 0.0 7.7e-05 21.5 0.0 2.2 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp PF02222.17 gi|89257158|ref|YP_514520.1| - 0.00017 21.0 0.0 0.00025 20.4 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain NAD_binding_4 PF07993.7 gi|89257158|ref|YP_514520.1| - 0.047 12.6 0.5 3.2 6.5 0.0 2.1 1 1 0 2 2 2 0 Male sterility protein TTL PF03133.10 gi|89257158|ref|YP_514520.1| - 0.075 11.9 0.0 0.18 10.7 0.0 1.6 2 0 0 2 2 2 0 Tubulin-tyrosine ligase family GARS_A PF01071.14 gi|89257158|ref|YP_514520.1| - 0.095 12.2 0.1 0.16 11.5 0.1 1.3 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain dCMP_cyt_deam_1 PF00383.17 gi|89257159|ref|YP_514521.1| - 6.9e-22 77.0 0.0 9.9e-22 76.5 0.0 1.2 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region MafB19-deam PF14437.1 gi|89257159|ref|YP_514521.1| - 0.015 14.8 0.0 0.026 14.1 0.0 1.3 1 0 0 1 1 1 0 MafB19-like deaminase APOBEC_N PF08210.6 gi|89257159|ref|YP_514521.1| - 0.024 14.2 0.0 0.049 13.2 0.0 1.4 1 1 0 1 1 1 0 APOBEC-like N-terminal domain Bd3614-deam PF14439.1 gi|89257159|ref|YP_514521.1| - 0.049 13.4 0.2 0.1 12.4 0.1 1.6 1 1 0 1 1 1 0 Bd3614-like deaminase S1 PF00575.18 gi|89257160|ref|YP_514522.1| - 7.6e-101 330.3 27.6 2.5e-24 85.1 0.6 6.1 6 0 0 6 6 6 6 S1 RNA binding domain S1_2 PF13509.1 gi|89257160|ref|YP_514522.1| - 1.6e-09 37.5 7.0 0.86 9.5 0.0 6.8 6 3 0 6 6 6 4 S1 domain CSD PF00313.17 gi|89257160|ref|YP_514522.1| - 0.0001 21.9 1.1 0.18 11.5 0.1 3.4 3 0 0 3 3 3 2 'Cold-shock' DNA-binding domain EntA_Immun PF08951.5 gi|89257160|ref|YP_514522.1| - 0.029 14.5 0.3 0.13 12.4 0.0 2.1 2 0 0 2 2 2 0 Enterocin A Immunity CusF_Ec PF11604.3 gi|89257160|ref|YP_514522.1| - 0.03 14.1 1.0 12 5.8 0.0 4.4 3 0 0 3 3 3 0 Copper binding periplasmic protein CusF BPL_C PF02237.12 gi|89257160|ref|YP_514522.1| - 0.13 11.9 9.5 0.51 10.0 0.1 4.7 5 0 0 5 5 5 0 Biotin protein ligase C terminal domain CsrA PF02599.11 gi|89257160|ref|YP_514522.1| - 2.1 8.1 17.4 2.6 7.8 0.2 5.1 5 0 0 5 5 5 0 Global regulator protein family Sua5_yciO_yrdC PF01300.13 gi|89257161|ref|YP_514523.1| - 6.4e-31 106.9 0.2 7e-31 106.8 0.1 1.0 1 0 0 1 1 1 1 Telomere recombination DUF1350 PF07082.6 gi|89257161|ref|YP_514523.1| - 0.036 13.1 0.0 0.044 12.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1350) FUR PF01475.14 gi|89257161|ref|YP_514523.1| - 0.09 12.6 0.1 0.17 11.8 0.1 1.4 1 0 0 1 1 1 0 Ferric uptake regulator family DUF4271 PF14093.1 gi|89257162|ref|YP_514524.1| - 0.0011 18.7 1.7 0.0011 18.7 1.2 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4271) MerT PF02411.10 gi|89257162|ref|YP_514524.1| - 1.3 8.8 7.4 0.2 11.4 1.0 2.2 2 1 0 2 2 2 0 MerT mercuric transport protein Acyltransferase PF01553.16 gi|89257163|ref|YP_514525.1| - 1.1e-14 53.9 0.0 1.9e-14 53.2 0.0 1.3 1 0 0 1 1 1 1 Acyltransferase Competence PF03772.11 gi|89257164|ref|YP_514526.1| - 7.7e-56 189.1 49.0 1.2e-55 188.5 34.0 1.3 1 0 0 1 1 1 1 Competence protein DUF4131 PF13567.1 gi|89257164|ref|YP_514526.1| - 9.8e-09 34.8 0.0 9.8e-09 34.8 0.0 6.0 2 1 2 4 4 4 2 Domain of unknown function (DUF4131) RLAN PF14401.1 gi|89257165|ref|YP_514527.1| - 4.5e-34 117.1 0.2 6.3e-34 116.6 0.2 1.2 1 0 0 1 1 1 1 RimK-like ATPgrasp N-terminal domain RimK PF08443.6 gi|89257166|ref|YP_514528.1| - 1.3e-10 41.1 0.1 1.5e-10 40.8 0.1 1.0 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_4 PF13535.1 gi|89257166|ref|YP_514528.1| - 3.8e-08 33.2 0.0 4.1e-08 33.1 0.0 1.1 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|89257166|ref|YP_514528.1| - 3.7e-07 29.7 0.0 4.3e-07 29.5 0.0 1.1 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus ATPgrasp_Ter PF15632.1 gi|89257166|ref|YP_514528.1| - 0.00057 18.7 0.0 0.00065 18.5 0.0 1.0 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon GARS_A PF01071.14 gi|89257166|ref|YP_514528.1| - 0.0012 18.4 0.0 0.0015 18.1 0.0 1.1 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp PF02222.17 gi|89257166|ref|YP_514528.1| - 0.0032 16.8 0.0 0.004 16.5 0.0 1.1 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|89257166|ref|YP_514528.1| - 0.038 13.2 0.0 0.043 13.0 0.0 1.1 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain ABC_tran PF00005.22 gi|89257167|ref|YP_514529.1| - 6.3e-32 110.7 0.0 9.3e-32 110.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|89257167|ref|YP_514529.1| - 9.2e-08 32.3 2.0 0.0059 16.6 0.3 2.3 1 1 1 2 2 2 2 AAA domain DUF258 PF03193.11 gi|89257167|ref|YP_514529.1| - 1.2e-05 24.5 0.1 1.9e-05 23.9 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|89257167|ref|YP_514529.1| - 6.9e-05 22.9 0.0 0.0002 21.4 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|89257167|ref|YP_514529.1| - 0.0016 17.9 0.1 0.0027 17.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|89257167|ref|YP_514529.1| - 0.0021 17.2 2.2 0.066 12.2 1.1 2.2 1 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|89257167|ref|YP_514529.1| - 0.0037 17.4 0.1 0.15 12.1 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|89257167|ref|YP_514529.1| - 0.0043 17.3 0.1 0.0058 16.9 0.1 1.4 1 0 0 1 1 1 1 AAA domain T2SE PF00437.15 gi|89257167|ref|YP_514529.1| - 0.0067 15.3 0.0 0.013 14.4 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_18 PF13238.1 gi|89257167|ref|YP_514529.1| - 0.009 16.3 0.1 0.027 14.7 0.0 1.8 2 0 0 2 2 2 1 AAA domain Miro PF08477.8 gi|89257167|ref|YP_514529.1| - 0.013 15.9 0.3 0.031 14.7 0.1 1.7 2 0 0 2 2 1 0 Miro-like protein AAA_17 PF13207.1 gi|89257167|ref|YP_514529.1| - 0.016 15.9 1.1 0.024 15.4 0.8 1.8 1 1 0 1 1 1 0 AAA domain MobB PF03205.9 gi|89257167|ref|YP_514529.1| - 0.021 14.5 0.1 0.038 13.6 0.1 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B MMR_HSR1 PF01926.18 gi|89257167|ref|YP_514529.1| - 0.025 14.5 0.6 0.077 12.9 0.1 1.9 2 0 0 2 2 2 0 50S ribosome-binding GTPase NB-ARC PF00931.17 gi|89257167|ref|YP_514529.1| - 0.04 12.7 0.1 0.068 12.0 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain DUF87 PF01935.12 gi|89257167|ref|YP_514529.1| - 0.046 13.5 0.8 0.078 12.7 0.1 1.7 2 0 0 2 2 2 0 Domain of unknown function DUF87 AAA PF00004.24 gi|89257167|ref|YP_514529.1| - 0.054 13.6 0.1 0.28 11.3 0.0 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) UPF0079 PF02367.12 gi|89257167|ref|YP_514529.1| - 0.078 12.6 0.1 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 IstB_IS21 PF01695.12 gi|89257167|ref|YP_514529.1| - 0.079 12.3 0.0 0.14 11.6 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein SbcCD_C PF13558.1 gi|89257167|ref|YP_514529.1| - 0.086 12.7 0.3 0.25 11.2 0.2 1.8 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit PRK PF00485.13 gi|89257167|ref|YP_514529.1| - 0.1 12.1 0.3 0.17 11.3 0.2 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family Adeno_IVa2 PF02456.10 gi|89257167|ref|YP_514529.1| - 0.12 11.0 0.6 0.15 10.7 0.0 1.4 2 0 0 2 2 2 0 Adenovirus IVa2 protein DUF815 PF05673.8 gi|89257167|ref|YP_514529.1| - 0.14 11.0 0.0 0.21 10.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_10 PF12846.2 gi|89257167|ref|YP_514529.1| - 0.19 11.1 0.6 0.39 10.1 0.2 1.6 2 0 0 2 2 2 0 AAA-like domain YGGT PF02325.12 gi|89257168|ref|YP_514530.1| - 1.7e-39 133.5 24.4 3.2e-20 71.8 5.9 2.3 2 0 0 2 2 2 2 YGGT family Peptidase_M14 PF00246.19 gi|89257169|ref|YP_514531.1| - 3.8e-10 39.8 0.0 5.7e-10 39.2 0.0 1.4 1 0 0 1 1 1 1 Zinc carboxypeptidase AstE_AspA PF04952.9 gi|89257169|ref|YP_514531.1| - 1.3e-05 24.2 0.0 1.8e-05 23.8 0.0 1.2 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family DUF2817 PF10994.3 gi|89257169|ref|YP_514531.1| - 0.00028 20.0 0.0 0.00049 19.2 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2817) DDE_3 PF13358.1 gi|89257170|ref|YP_514532.1| - 1.7e-31 108.9 0.0 2.8e-31 108.2 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_1 PF03184.14 gi|89257170|ref|YP_514532.1| - 5.8e-07 28.8 0.1 9.5e-07 28.1 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.11 gi|89257170|ref|YP_514532.1| - 6.3e-07 29.0 0.2 4.4e-06 26.3 0.1 2.1 2 0 0 2 2 2 1 Transposase rve PF00665.21 gi|89257170|ref|YP_514532.1| - 0.00073 19.6 0.0 0.0013 18.7 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_28 PF13518.1 gi|89257170|ref|YP_514532.1| - 0.032 14.2 0.1 0.13 12.2 0.0 2.1 1 1 0 1 1 1 0 Helix-turn-helix domain DDE_Tnp_ISAZ013 PF07592.6 gi|89257170|ref|YP_514532.1| - 0.04 12.6 0.6 0.32 9.7 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain HTH_29 PF13551.1 gi|89257170|ref|YP_514532.1| - 0.092 12.9 0.0 0.15 12.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix DDE_Tnp_1 PF01609.16 gi|89257171|ref|YP_514533.1| - 3.5e-10 39.7 0.0 4.7e-10 39.3 0.0 1.1 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|89257171|ref|YP_514533.1| - 2.3e-06 27.4 0.0 3e-06 27.0 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF4096 PF13340.1 gi|89257171|ref|YP_514533.1| - 0.0004 20.1 0.0 0.00071 19.3 0.0 1.4 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) DDE_Tnp_1_2 PF13586.1 gi|89257171|ref|YP_514533.1| - 0.012 15.7 0.1 0.053 13.7 0.0 2.0 2 1 0 2 2 2 0 Transposase DDE domain AICARFT_IMPCHas PF01808.13 gi|89257172|ref|YP_514534.1| - 1.6e-120 401.9 1.3 2.2e-120 401.5 0.9 1.2 1 0 0 1 1 1 1 AICARFT/IMPCHase bienzyme MGS PF02142.17 gi|89257172|ref|YP_514534.1| - 4.7e-27 93.7 0.1 4.1e-26 90.7 0.0 2.3 2 0 0 2 2 2 1 MGS-like domain Adenylsucc_synt PF00709.16 gi|89257173|ref|YP_514535.1| - 3.1e-160 533.4 0.1 3.5e-160 533.2 0.1 1.0 1 0 0 1 1 1 1 Adenylosuccinate synthetase Pribosyltran PF00156.22 gi|89257174|ref|YP_514536.1| - 1.3e-20 73.3 0.0 1.6e-20 73.0 0.0 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|89257174|ref|YP_514536.1| - 0.052 12.7 0.0 0.069 12.3 0.0 1.2 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase SurA_N PF09312.6 gi|89257174|ref|YP_514536.1| - 0.089 12.6 0.1 0.18 11.6 0.0 1.6 2 0 0 2 2 2 0 SurA N-terminal domain ABC-3 PF00950.12 gi|89257175|ref|YP_514537.1| - 4.8e-50 170.2 39.6 6.7e-50 169.7 27.5 1.2 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.13 gi|89257175|ref|YP_514537.1| - 1.3e-06 27.4 32.8 1.3e-06 27.4 22.7 2.0 1 1 1 2 2 2 1 FecCD transport family ABC_tran PF00005.22 gi|89257176|ref|YP_514538.1| - 2.2e-24 86.3 0.0 3.2e-24 85.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|89257176|ref|YP_514538.1| - 1.4e-15 58.0 7.6 3.4e-13 50.2 5.3 2.0 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|89257176|ref|YP_514538.1| - 4e-06 26.1 7.2 6.6e-05 22.1 0.8 2.2 1 1 1 2 2 2 2 AAA ATPase domain SMC_N PF02463.14 gi|89257176|ref|YP_514538.1| - 8.4e-06 25.1 1.6 0.00012 21.4 1.1 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain Dynamin_N PF00350.18 gi|89257176|ref|YP_514538.1| - 0.00019 21.2 0.8 0.00055 19.7 0.6 1.6 1 1 0 1 1 1 1 Dynamin family SbcCD_C PF13558.1 gi|89257176|ref|YP_514538.1| - 0.0006 19.6 0.0 0.0081 16.0 0.0 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.1 gi|89257176|ref|YP_514538.1| - 0.00094 18.6 0.1 0.99 8.7 0.0 2.2 2 0 0 2 2 2 2 AAA domain T2SE PF00437.15 gi|89257176|ref|YP_514538.1| - 0.0062 15.4 0.1 0.01 14.7 0.1 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_23 PF13476.1 gi|89257176|ref|YP_514538.1| - 0.008 16.5 6.1 0.07 13.4 4.2 2.2 1 1 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.18 gi|89257176|ref|YP_514538.1| - 0.0095 15.8 3.0 0.026 14.4 2.1 2.0 1 1 0 1 1 1 1 50S ribosome-binding GTPase Miro PF08477.8 gi|89257176|ref|YP_514538.1| - 0.012 16.0 0.5 0.024 15.1 0.1 1.7 2 1 0 2 2 2 0 Miro-like protein DUF258 PF03193.11 gi|89257176|ref|YP_514538.1| - 0.026 13.7 0.0 0.049 12.8 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|89257176|ref|YP_514538.1| - 0.03 13.8 0.5 0.063 12.8 0.0 1.8 2 0 0 2 2 1 0 P-loop containing region of AAA domain AAA_18 PF13238.1 gi|89257176|ref|YP_514538.1| - 0.036 14.3 1.9 0.35 11.1 1.3 2.3 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|89257176|ref|YP_514538.1| - 0.039 12.8 0.1 0.083 11.7 0.1 1.5 1 0 0 1 1 1 0 NB-ARC domain AAA PF00004.24 gi|89257176|ref|YP_514538.1| - 0.04 14.1 1.6 0.3 11.2 1.1 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_10 PF12846.2 gi|89257176|ref|YP_514538.1| - 0.094 12.1 0.0 0.55 9.6 0.0 1.9 2 0 0 2 2 2 0 AAA-like domain MobB PF03205.9 gi|89257176|ref|YP_514538.1| - 0.097 12.3 0.4 0.21 11.2 0.3 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B DUF87 PF01935.12 gi|89257176|ref|YP_514538.1| - 0.11 12.2 1.7 0.21 11.3 1.2 1.8 1 1 0 1 1 1 0 Domain of unknown function DUF87 AAA_17 PF13207.1 gi|89257176|ref|YP_514538.1| - 0.12 13.2 0.3 0.24 12.2 0.2 1.6 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|89257176|ref|YP_514538.1| - 0.13 11.8 0.1 0.23 11.0 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|89257176|ref|YP_514538.1| - 0.15 11.9 2.1 5.3 6.9 1.5 2.2 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|89257176|ref|YP_514538.1| - 0.19 11.5 0.1 0.21 11.4 0.1 1.4 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|89257176|ref|YP_514538.1| - 0.21 11.7 1.1 1.6 8.9 0.7 2.0 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|89257176|ref|YP_514538.1| - 0.31 10.6 2.9 1.4 8.5 0.3 2.1 2 0 0 2 2 2 0 NACHT domain TroA PF01297.12 gi|89257177|ref|YP_514539.1| - 1.3e-43 149.0 2.9 1.7e-43 148.7 2.0 1.0 1 0 0 1 1 1 1 Periplasmic solute binding protein family Peripla_BP_6 PF13458.1 gi|89257177|ref|YP_514539.1| - 0.0039 16.5 0.0 0.0075 15.6 0.0 1.5 1 0 0 1 1 1 1 Periplasmic binding protein Myosin_N PF02736.14 gi|89257178|ref|YP_514540.1| - 0.051 13.2 0.0 0.74 9.5 0.0 2.3 2 0 0 2 2 2 0 Myosin N-terminal SH3-like domain TraT PF05818.7 gi|89257178|ref|YP_514540.1| - 0.42 9.9 3.7 0.59 9.5 2.5 1.3 1 0 0 1 1 1 0 Enterobacterial TraT complement resistance protein DUF533 PF04391.7 gi|89257178|ref|YP_514540.1| - 1.3 8.3 6.8 1 8.6 3.7 1.5 1 1 1 2 2 2 0 Protein of unknown function (DUF533) Glug PF07581.7 gi|89257178|ref|YP_514540.1| - 3.6 7.9 18.9 4.6 7.6 1.3 3.7 2 1 1 3 3 3 0 The GLUG motif Gly-zipper_Omp PF13488.1 gi|89257178|ref|YP_514540.1| - 5 6.8 28.2 7.2 6.3 7.5 2.1 1 1 1 2 2 2 0 Glycine zipper Rick_17kDa_Anti PF05433.10 gi|89257178|ref|YP_514540.1| - 9.2 6.0 28.9 4.3 7.0 6.4 2.3 1 1 1 2 2 2 0 Glycine zipper 2TM domain PT-VENN PF04829.8 gi|89257178|ref|YP_514540.1| - 9.7 5.8 11.7 1.5 8.4 2.8 2.5 2 0 0 2 2 2 0 Pre-toxin domain with VENN motif FMN_red PF03358.10 gi|89257179|ref|YP_514541.1| - 3.4e-14 52.5 0.0 5.3e-14 51.9 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_5 PF12724.2 gi|89257179|ref|YP_514541.1| - 1.4e-07 31.5 0.0 0.0072 16.3 0.2 2.2 1 1 1 2 2 2 2 Flavodoxin domain Flavodoxin_2 PF02525.12 gi|89257179|ref|YP_514541.1| - 1.3e-05 24.7 0.0 1.7e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_1 PF00258.20 gi|89257179|ref|YP_514541.1| - 0.001 19.0 0.1 0.0018 18.2 0.1 1.6 1 1 0 1 1 1 1 Flavodoxin Flavodoxin_4 PF12682.2 gi|89257179|ref|YP_514541.1| - 0.0011 18.2 0.0 0.0085 15.4 0.0 2.2 1 1 0 1 1 1 1 Flavodoxin ILVD_EDD PF00920.16 gi|89257179|ref|YP_514541.1| - 0.042 12.2 0.1 0.065 11.6 0.0 1.2 1 0 0 1 1 1 0 Dehydratase family Virul_fac_BrkB PF03631.10 gi|89257180|ref|YP_514542.1| - 8.4e-47 159.7 29.9 1e-46 159.4 20.7 1.1 1 0 0 1 1 1 1 Virulence factor BrkB NMN_transporter PF04973.7 gi|89257181|ref|YP_514543.1| - 1.1e-31 109.7 34.5 1.2e-31 109.5 23.9 1.1 1 0 0 1 1 1 1 Nicotinamide mononucleotide transporter DUF4131 PF13567.1 gi|89257181|ref|YP_514543.1| - 2 7.7 15.6 0.41 10.0 6.7 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) DEAD PF00270.24 gi|89257182|ref|YP_514544.1| - 2.1e-17 63.1 1.1 1.3e-16 60.5 0.2 2.4 2 0 0 2 2 2 1 DEAD/DEAH box helicase ResIII PF04851.10 gi|89257182|ref|YP_514544.1| - 2.2e-11 43.9 0.4 8.7e-11 41.9 0.3 2.0 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|89257182|ref|YP_514544.1| - 2.8e-07 30.2 1.9 0.00071 19.3 0.2 3.4 3 0 0 3 3 3 2 Helicase conserved C-terminal domain Arch_ATPase PF01637.13 gi|89257182|ref|YP_514544.1| - 0.0011 18.6 0.1 0.0011 18.6 0.0 1.7 2 0 0 2 2 2 1 Archaeal ATPase Zot PF05707.7 gi|89257182|ref|YP_514544.1| - 0.012 15.1 0.1 0.036 13.5 0.0 1.9 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) Mtr2 PF10429.4 gi|89257182|ref|YP_514544.1| - 0.013 15.2 0.4 0.094 12.4 0.1 2.4 2 0 0 2 2 2 0 Nuclear pore RNA shuttling protein Mtr2 AAA_30 PF13604.1 gi|89257182|ref|YP_514544.1| - 0.057 12.9 0.0 0.13 11.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|89257182|ref|YP_514544.1| - 0.063 13.0 0.0 0.15 11.8 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain AAA_25 PF13481.1 gi|89257182|ref|YP_514544.1| - 0.16 11.3 0.0 0.35 10.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain DDE_3 PF13358.1 gi|89257183|ref|YP_514545.1| - 1.7e-31 108.9 0.0 2.8e-31 108.2 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_1 PF03184.14 gi|89257183|ref|YP_514545.1| - 5.8e-07 28.8 0.1 9.5e-07 28.1 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.11 gi|89257183|ref|YP_514545.1| - 6.3e-07 29.0 0.2 4.4e-06 26.3 0.1 2.1 2 0 0 2 2 2 1 Transposase rve PF00665.21 gi|89257183|ref|YP_514545.1| - 0.00073 19.6 0.0 0.0013 18.7 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_28 PF13518.1 gi|89257183|ref|YP_514545.1| - 0.032 14.2 0.1 0.13 12.2 0.0 2.1 1 1 0 1 1 1 0 Helix-turn-helix domain DDE_Tnp_ISAZ013 PF07592.6 gi|89257183|ref|YP_514545.1| - 0.04 12.6 0.6 0.32 9.7 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain HTH_29 PF13551.1 gi|89257183|ref|YP_514545.1| - 0.092 12.9 0.0 0.15 12.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix Reovirus_Mu2 PF07781.6 gi|89257184|ref|YP_514546.1| - 0.13 10.2 0.2 0.14 10.0 0.1 1.0 1 0 0 1 1 1 0 Reovirus minor core protein Mu-2 Methyltransf_23 PF13489.1 gi|89257185|ref|YP_514547.1| - 5e-06 26.3 0.0 5.7e-06 26.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|89257185|ref|YP_514547.1| - 8.6e-06 25.4 0.8 1.8e-05 24.3 0.6 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|89257185|ref|YP_514547.1| - 0.00021 21.8 0.0 0.0003 21.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain GidB PF02527.10 gi|89257185|ref|YP_514547.1| - 0.00069 18.7 0.2 0.002 17.2 0.2 1.8 1 1 0 1 1 1 1 rRNA small subunit methyltransferase G Methyltransf_12 PF08242.7 gi|89257185|ref|YP_514547.1| - 0.00076 19.9 0.4 0.002 18.5 0.3 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|89257185|ref|YP_514547.1| - 0.002 18.6 0.0 0.003 18.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|89257185|ref|YP_514547.1| - 0.0099 15.2 0.1 0.014 14.7 0.1 1.3 1 1 0 1 1 1 1 Methyltransferase small domain MetW PF07021.7 gi|89257185|ref|YP_514547.1| - 0.011 15.1 0.0 0.014 14.8 0.0 1.1 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Methyltransf_25 PF13649.1 gi|89257185|ref|YP_514547.1| - 0.014 15.7 0.1 0.034 14.5 0.0 1.7 2 1 0 2 2 2 0 Methyltransferase domain Methyltransf_2 PF00891.13 gi|89257185|ref|YP_514547.1| - 0.017 14.3 0.0 0.017 14.3 0.0 1.1 1 0 0 1 1 1 0 O-methyltransferase Methyltransf_4 PF02390.12 gi|89257185|ref|YP_514547.1| - 0.018 14.0 0.0 0.023 13.7 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase Methyltransf_26 PF13659.1 gi|89257185|ref|YP_514547.1| - 0.11 12.5 0.0 0.14 12.2 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain CMAS PF02353.15 gi|89257185|ref|YP_514547.1| - 0.11 11.5 0.0 0.14 11.1 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase ABC_tran PF00005.22 gi|89257186|ref|YP_514548.1| - 8.8e-53 178.2 0.5 2.6e-26 92.5 0.0 3.2 3 0 0 3 3 3 2 ABC transporter AAA_21 PF13304.1 gi|89257186|ref|YP_514548.1| - 2e-24 87.0 0.3 1.9e-07 31.3 0.0 4.4 3 1 1 4 4 4 4 AAA domain ABC_tran_2 PF12848.2 gi|89257186|ref|YP_514548.1| - 4.2e-14 52.1 15.0 6.7e-12 45.0 5.6 2.9 3 0 0 3 3 3 2 ABC transporter AAA_25 PF13481.1 gi|89257186|ref|YP_514548.1| - 1.7e-07 30.8 0.3 0.034 13.5 0.0 4.0 3 1 0 3 3 3 2 AAA domain SMC_N PF02463.14 gi|89257186|ref|YP_514548.1| - 3.7e-07 29.5 2.3 1.7 7.8 0.0 4.2 4 0 0 4 4 4 3 RecF/RecN/SMC N terminal domain Miro PF08477.8 gi|89257186|ref|YP_514548.1| - 2.5e-06 28.0 0.0 0.062 13.7 0.0 2.7 2 0 0 2 2 2 2 Miro-like protein AAA_33 PF13671.1 gi|89257186|ref|YP_514548.1| - 4.3e-06 26.6 0.1 0.2 11.5 0.1 3.3 2 1 0 2 2 2 2 AAA domain SbcCD_C PF13558.1 gi|89257186|ref|YP_514548.1| - 1.2e-05 25.1 0.9 0.15 11.9 0.0 4.0 2 2 0 2 2 2 2 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.1 gi|89257186|ref|YP_514548.1| - 1.7e-05 24.2 2.8 0.047 13.2 0.1 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain Dynamin_N PF00350.18 gi|89257186|ref|YP_514548.1| - 1.9e-05 24.5 0.8 0.05 13.4 0.0 3.0 3 1 0 3 3 3 2 Dynamin family MMR_HSR1 PF01926.18 gi|89257186|ref|YP_514548.1| - 2.8e-05 24.0 0.6 0.1 12.5 0.1 2.8 2 1 0 2 2 2 2 50S ribosome-binding GTPase AAA_22 PF13401.1 gi|89257186|ref|YP_514548.1| - 5.2e-05 23.3 0.5 0.016 15.3 0.0 3.3 2 1 1 3 3 3 1 AAA domain AAA_15 PF13175.1 gi|89257186|ref|YP_514548.1| - 9.8e-05 21.5 0.9 2.9 6.8 0.0 4.8 4 1 1 5 5 5 1 AAA ATPase domain ArgK PF03308.11 gi|89257186|ref|YP_514548.1| - 0.00033 19.5 0.2 0.65 8.7 0.0 2.3 2 0 0 2 2 2 2 ArgK protein AAA_18 PF13238.1 gi|89257186|ref|YP_514548.1| - 0.0004 20.6 3.1 0.11 12.8 0.0 3.2 3 1 0 3 3 3 1 AAA domain DUF258 PF03193.11 gi|89257186|ref|YP_514548.1| - 0.00079 18.6 0.1 0.17 11.0 0.0 2.4 2 0 0 2 2 2 1 Protein of unknown function, DUF258 AAA_28 PF13521.1 gi|89257186|ref|YP_514548.1| - 0.0018 18.2 0.9 1.6 8.6 0.0 3.2 3 1 0 3 3 3 1 AAA domain AAA_14 PF13173.1 gi|89257186|ref|YP_514548.1| - 0.0063 16.4 0.1 4 7.3 0.0 3.5 3 1 0 4 4 4 1 AAA domain AAA_16 PF13191.1 gi|89257186|ref|YP_514548.1| - 0.0065 16.4 2.9 0.52 10.2 0.2 2.9 3 1 0 3 3 3 1 AAA ATPase domain AAA_17 PF13207.1 gi|89257186|ref|YP_514548.1| - 0.012 16.4 13.1 0.34 11.7 0.4 4.5 2 2 0 2 2 2 0 AAA domain Ribosomal_L18_c PF14204.1 gi|89257186|ref|YP_514548.1| - 0.02 15.4 1.0 0.052 14.0 0.7 1.7 1 0 0 1 1 1 0 Ribosomal L18 C-terminal region AAA_10 PF12846.2 gi|89257186|ref|YP_514548.1| - 0.021 14.2 4.1 2.3 7.5 1.0 2.9 2 1 0 2 2 2 0 AAA-like domain Arf PF00025.16 gi|89257186|ref|YP_514548.1| - 0.022 14.0 0.1 1.2 8.3 0.0 2.6 2 0 0 2 2 2 0 ADP-ribosylation factor family MobB PF03205.9 gi|89257186|ref|YP_514548.1| - 0.025 14.2 2.1 3.9 7.1 0.1 2.6 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_23 PF13476.1 gi|89257186|ref|YP_514548.1| - 0.045 14.0 1.1 0.045 14.0 0.7 3.6 2 2 1 3 3 2 0 AAA domain G-alpha PF00503.15 gi|89257186|ref|YP_514548.1| - 0.11 11.1 1.7 2 7.0 0.0 2.4 1 1 0 2 2 2 0 G-protein alpha subunit KAP_NTPase PF07693.9 gi|89257186|ref|YP_514548.1| - 0.11 11.4 0.3 1.7 7.5 0.0 2.5 2 0 0 2 2 2 0 KAP family P-loop domain MRP-L46 PF11788.3 gi|89257186|ref|YP_514548.1| - 0.13 12.9 3.6 0.27 11.8 2.5 1.4 1 0 0 1 1 1 0 39S mitochondrial ribosomal protein L46 ATP_bind_1 PF03029.12 gi|89257186|ref|YP_514548.1| - 0.26 10.7 0.7 21 4.5 0.0 2.5 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_13 PF13166.1 gi|89257186|ref|YP_514548.1| - 0.28 9.5 7.7 6.8 5.0 0.0 3.6 3 1 0 3 3 3 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|89257186|ref|YP_514548.1| - 0.57 9.6 2.3 13 5.1 0.0 2.7 3 0 0 3 3 3 0 FtsK/SpoIIIE family NACHT PF05729.7 gi|89257186|ref|YP_514548.1| - 2.3 7.8 7.0 11 5.6 0.4 2.8 3 0 0 3 3 2 0 NACHT domain DUF87 PF01935.12 gi|89257186|ref|YP_514548.1| - 6.9 6.4 11.6 16 5.2 0.2 3.9 4 0 0 4 4 4 0 Domain of unknown function DUF87 MFS_1 PF07690.11 gi|89257187|ref|YP_514549.1| - 1e-18 67.2 34.0 1e-18 67.2 23.5 2.0 1 1 1 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|89257187|ref|YP_514549.1| - 2.3e-14 52.8 40.9 1.1e-11 44.0 28.4 2.0 1 1 0 1 1 1 1 Sugar (and other) transporter TMEM89 PF15098.1 gi|89257187|ref|YP_514549.1| - 0.6 10.1 2.3 1.6 8.7 0.2 2.3 2 0 0 2 2 2 0 TMEM89 protein family Lactamase_B_2 PF12706.2 gi|89257189|ref|YP_514551.1| - 3e-36 124.8 0.1 4e-36 124.3 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|89257189|ref|YP_514551.1| - 6.5e-16 58.4 0.0 8.8e-16 58.0 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|89257189|ref|YP_514551.1| - 0.00078 19.1 0.1 0.045 13.3 0.1 2.2 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily PY_rept_46 PF09689.5 gi|89257189|ref|YP_514551.1| - 0.048 13.9 1.5 0.12 12.6 0.2 2.2 2 0 0 2 2 2 0 Plasmodium yoelii repeat (PY_rept_46) LysE PF01810.13 gi|89257190|ref|YP_514552.1| - 1.1e-11 44.3 7.6 1.3e-11 44.1 5.3 1.0 1 0 0 1 1 1 1 LysE type translocator 7TM_transglut PF14402.1 gi|89257190|ref|YP_514552.1| - 0.056 12.3 7.8 0.055 12.3 5.4 1.1 1 0 0 1 1 1 0 7 transmembrane helices usually fused to an inactive transglutaminase DUF1774 PF08611.5 gi|89257190|ref|YP_514552.1| - 0.24 11.5 6.4 0.32 11.1 4.3 1.3 1 1 0 1 1 1 0 Fungal protein of unknown function (DUF1774) TauE PF01925.14 gi|89257191|ref|YP_514553.1| - 2.6e-12 46.7 10.9 2.8e-12 46.5 7.5 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF2721 PF11026.3 gi|89257191|ref|YP_514553.1| - 2.9 7.5 7.0 0.4 10.3 1.8 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF2721) DUF3458 PF11940.3 gi|89257192|ref|YP_514554.1| - 9.3e-125 416.2 8.7 1.7e-124 415.4 6.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF3458) Peptidase_M1 PF01433.15 gi|89257192|ref|YP_514554.1| - 1.1e-71 242.0 1.2 1.8e-71 241.3 0.8 1.3 1 0 0 1 1 1 1 Peptidase family M1 Peptidase_MA_2 PF13485.1 gi|89257192|ref|YP_514554.1| - 1.1e-16 61.0 0.0 2.4e-16 59.9 0.0 1.5 1 0 0 1 1 1 1 Peptidase MA superfamily DUF2063 PF09836.4 gi|89257192|ref|YP_514554.1| - 0.034 14.1 0.2 10 6.1 0.0 3.2 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2063) HSP20 PF00011.16 gi|89257193|ref|YP_514555.1| - 1.9e-27 95.0 2.5 3e-27 94.4 1.7 1.3 1 0 0 1 1 1 1 Hsp20/alpha crystallin family DUF4097 PF13349.1 gi|89257193|ref|YP_514555.1| - 0.0011 18.5 4.0 0.0018 17.8 2.8 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4097) CS PF04969.11 gi|89257193|ref|YP_514555.1| - 0.02 15.3 2.2 0.046 14.2 0.7 2.2 1 1 1 2 2 2 0 CS domain DUF244 PF03112.9 gi|89257193|ref|YP_514555.1| - 0.059 12.9 9.4 0.095 12.2 6.3 1.6 1 1 0 1 1 1 0 Uncharacterized protein family (ORF7) DUF DUF104 PF01954.11 gi|89257193|ref|YP_514555.1| - 0.14 12.1 1.6 2 8.5 0.0 2.8 3 0 0 3 3 3 0 Protein of unknown function DUF104 DUF2807 PF10988.3 gi|89257193|ref|YP_514555.1| - 0.98 8.9 5.9 5.1 6.5 0.5 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2807) IGPS PF00218.16 gi|89257194|ref|YP_514556.1| - 6.8e-89 297.2 1.0 9.3e-89 296.8 0.7 1.2 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase PRAI PF00697.17 gi|89257194|ref|YP_514556.1| - 2.3e-51 174.1 0.1 3.9e-51 173.4 0.1 1.4 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase QRPTase_C PF01729.14 gi|89257194|ref|YP_514556.1| - 0.018 14.5 0.1 0.086 12.3 0.0 2.1 2 0 0 2 2 2 0 Quinolinate phosphoribosyl transferase, C-terminal domain Cass2 PF14526.1 gi|89257195|ref|YP_514557.1| - 0.048 13.6 0.2 0.049 13.6 0.2 1.1 1 0 0 1 1 1 0 Integron-associated effector binding protein PMSR PF01625.16 gi|89257196|ref|YP_514558.1| - 9.9e-61 204.1 10.3 1.3e-60 203.8 7.2 1.1 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase SRI PF08236.6 gi|89257196|ref|YP_514558.1| - 0.0015 18.4 7.4 0.0033 17.3 5.1 1.5 1 0 0 1 1 1 1 SRI (Set2 Rpb1 interacting) domain MbeB_N PF04837.7 gi|89257196|ref|YP_514558.1| - 0.023 14.7 0.8 0.044 13.8 0.6 1.4 1 0 0 1 1 1 0 MbeB-like, N-term conserved region eRF1_2 PF03464.10 gi|89257196|ref|YP_514558.1| - 0.058 13.7 0.2 0.11 12.8 0.1 1.5 1 0 0 1 1 1 0 eRF1 domain 2 MS_channel PF00924.13 gi|89257196|ref|YP_514558.1| - 0.089 12.1 0.3 0.24 10.7 0.2 1.8 1 1 0 1 1 1 0 Mechanosensitive ion channel NHase_alpha PF02979.11 gi|89257197|ref|YP_514559.1| - 3.6e-07 29.6 0.0 4.5e-07 29.3 0.0 1.1 1 0 0 1 1 1 1 Nitrile hydratase, alpha chain PROCT PF08084.6 gi|89257197|ref|YP_514559.1| - 0.13 12.0 0.0 0.18 11.5 0.0 1.3 1 1 0 1 1 1 0 PROCT (NUC072) domain NHase_alpha PF02979.11 gi|89257198|ref|YP_514560.1| - 0.00046 19.5 0.0 0.00061 19.1 0.0 1.3 1 0 0 1 1 1 1 Nitrile hydratase, alpha chain Chorismate_bind PF00425.13 gi|89257200|ref|YP_514562.1| - 3e-80 269.2 0.0 4.1e-80 268.8 0.0 1.2 1 0 0 1 1 1 1 chorismate binding enzyme Anth_synt_I_N PF04715.8 gi|89257200|ref|YP_514562.1| - 2.7e-19 69.5 0.0 6.1e-18 65.1 0.0 2.8 2 1 0 2 2 2 1 Anthranilate synthase component I, N terminal region Trp_repressor PF01371.14 gi|89257201|ref|YP_514563.1| - 5.6e-20 71.0 0.7 6.2e-20 70.9 0.5 1.0 1 0 0 1 1 1 1 Trp repressor protein HTH_28 PF13518.1 gi|89257201|ref|YP_514563.1| - 0.0039 17.1 0.0 0.006 16.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|89257201|ref|YP_514563.1| - 0.0082 15.7 0.1 0.012 15.2 0.1 1.3 1 0 0 1 1 1 1 Homeodomain-like domain HTH_24 PF13412.1 gi|89257201|ref|YP_514563.1| - 0.016 14.5 2.9 0.017 14.4 0.2 2.4 2 2 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_38 PF13936.1 gi|89257201|ref|YP_514563.1| - 0.03 13.8 0.4 0.05 13.1 0.3 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain RepL PF05732.6 gi|89257201|ref|YP_514563.1| - 0.079 12.1 0.1 0.19 10.9 0.0 1.5 1 1 1 2 2 2 0 Firmicute plasmid replication protein (RepL) LZ_Tnp_IS481 PF13011.1 gi|89257201|ref|YP_514563.1| - 0.11 12.9 0.0 0.14 12.5 0.0 1.2 1 0 0 1 1 1 0 leucine-zipper of insertion element IS481 DUF2004 PF09406.5 gi|89257201|ref|YP_514563.1| - 0.11 12.5 0.0 0.18 11.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2004) NUMOD1 PF07453.8 gi|89257201|ref|YP_514563.1| - 0.12 12.2 0.2 0.25 11.2 0.2 1.5 1 0 0 1 1 1 0 NUMOD1 domain Transpos_assoc PF13963.1 gi|89257201|ref|YP_514563.1| - 0.13 12.3 1.0 7.1 6.7 0.7 2.0 1 1 1 2 2 2 0 Transposase-associated domain RNase_E_G PF10150.4 gi|89257202|ref|YP_514564.1| - 1.3e-102 342.7 4.6 2e-102 342.0 3.2 1.3 1 0 0 1 1 1 1 Ribonuclease E/G family S1 PF00575.18 gi|89257202|ref|YP_514564.1| - 1e-11 44.7 0.6 2.6e-11 43.4 0.4 1.7 1 0 0 1 1 1 1 S1 RNA binding domain Adenine_deam_C PF13382.1 gi|89257202|ref|YP_514564.1| - 0.051 12.7 0.2 0.17 10.9 0.0 1.9 2 0 0 2 2 2 0 Adenine deaminase C-terminal domain