# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Bac_DnaA PF00308.18 gi|89255450|ref|YP_512811.1| - 2.6e-88 295.6 0.3 2.6e-88 295.6 0.3 1.7 2 0 0 2 2 2 1 Bacterial dnaA protein Bac_DnaA_C PF08299.11 gi|89255450|ref|YP_512811.1| - 5.7e-31 106.4 0.2 1.5e-30 105.0 0.2 1.8 1 0 0 1 1 1 1 Bacterial dnaA protein helix-turn-helix DnaA_N PF11638.8 gi|89255450|ref|YP_512811.1| - 2.6e-12 46.3 1.8 4.3e-12 45.6 0.9 1.9 2 0 0 2 2 2 1 DnaA N-terminal domain IstB_IS21 PF01695.17 gi|89255450|ref|YP_512811.1| - 8.9e-11 41.8 0.0 1.9e-10 40.8 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA PF00004.29 gi|89255450|ref|YP_512811.1| - 3.1e-07 30.9 0.0 9.7e-07 29.3 0.0 1.8 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.6 gi|89255450|ref|YP_512811.1| - 4.2e-07 30.0 2.0 1.5e-05 25.1 0.0 3.3 3 1 0 3 3 3 1 AAA domain ATPase_2 PF01637.18 gi|89255450|ref|YP_512811.1| - 1.1e-05 25.5 0.3 3.7e-05 23.7 0.1 2.0 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea RNA_helicase PF00910.22 gi|89255450|ref|YP_512811.1| - 0.002 18.5 0.1 0.01 16.2 0.1 2.3 1 1 0 1 1 1 1 RNA helicase AAA_22 PF13401.6 gi|89255450|ref|YP_512811.1| - 0.0035 17.6 0.7 0.17 12.1 0.1 3.1 2 2 0 2 2 2 1 AAA domain AFG1_ATPase PF03969.16 gi|89255450|ref|YP_512811.1| - 0.0051 15.8 0.1 0.059 12.3 0.1 2.1 1 1 1 2 2 2 2 AFG1-like ATPase AAA_19 PF13245.6 gi|89255450|ref|YP_512811.1| - 0.025 14.9 0.2 0.14 12.5 0.2 2.5 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|89255450|ref|YP_512811.1| - 0.043 14.2 0.0 0.081 13.3 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_24 PF13479.6 gi|89255450|ref|YP_512811.1| - 0.047 13.4 0.1 0.28 10.9 0.1 2.3 1 1 1 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|89255450|ref|YP_512811.1| - 0.066 12.4 0.2 0.35 10.0 0.0 2.2 3 0 0 3 3 3 0 NB-ARC domain NACHT PF05729.12 gi|89255450|ref|YP_512811.1| - 0.089 12.7 0.0 0.23 11.4 0.0 1.8 1 0 0 1 1 1 0 NACHT domain DNA_pol3_beta_2 PF02767.16 gi|89255451|ref|YP_512812.1| - 6.3e-38 129.6 0.5 1.8e-32 112.0 0.0 3.4 3 0 0 3 3 3 3 DNA polymerase III beta subunit, central domain DNA_pol3_beta_3 PF02768.15 gi|89255451|ref|YP_512812.1| - 5.7e-29 100.4 2.1 5.7e-29 100.4 2.1 2.5 2 0 0 2 2 2 1 DNA polymerase III beta subunit, C-terminal domain DNA_pol3_beta PF00712.19 gi|89255451|ref|YP_512812.1| - 1.5e-27 96.1 10.4 1.3e-23 83.4 2.6 2.9 3 0 0 3 3 3 2 DNA polymerase III beta subunit, N-terminal domain DUF4923 PF16270.5 gi|89255451|ref|YP_512812.1| - 0.0049 16.7 5.2 0.87 9.4 0.2 3.0 2 1 0 2 2 2 2 Lipocalin-like domain (DUF4923) MFS_1 PF07690.16 gi|89255452|ref|YP_512813.1| - 1e-07 31.2 15.5 1.2e-07 31.0 15.5 1.0 1 0 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|89255452|ref|YP_512813.1| - 0.0018 17.3 16.8 0.003 16.5 16.8 1.3 1 1 0 1 1 1 1 Sugar (and other) transporter DUF5400 PF17379.2 gi|89255452|ref|YP_512813.1| - 0.85 10.1 12.0 0.2 12.2 3.6 2.2 2 0 0 2 2 2 0 Family of unknown function (DUF5400) DUF1129 PF06570.11 gi|89255452|ref|YP_512813.1| - 5.8 6.3 10.8 8.1 5.9 10.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) DDE_3 PF13358.6 gi|89255453|ref|YP_512814.1| - 9.9e-30 103.2 0.2 3.2e-29 101.6 0.0 1.8 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.16 gi|89255453|ref|YP_512814.1| - 0.0029 17.6 1.5 0.0084 16.2 0.6 2.3 2 1 0 2 2 2 1 Transposase HTH_29 PF13551.6 gi|89255453|ref|YP_512814.1| - 0.0033 17.4 0.0 0.008 16.2 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn helix HTH_40 PF14493.6 gi|89255453|ref|YP_512814.1| - 0.011 16.2 0.1 0.069 13.6 0.0 2.3 3 1 0 3 3 3 0 Helix-turn-helix domain HTH_28 PF13518.6 gi|89255453|ref|YP_512814.1| - 0.026 14.6 0.0 0.073 13.2 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain CENP-B_N PF04218.13 gi|89255453|ref|YP_512814.1| - 0.097 12.3 0.0 0.98 9.1 0.0 2.5 3 0 0 3 3 3 0 CENP-B N-terminal DNA-binding domain HTH_23 PF13384.6 gi|89255453|ref|YP_512814.1| - 0.12 12.2 0.0 0.34 10.8 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain rve PF00665.26 gi|89255453|ref|YP_512814.1| - 0.15 12.3 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 Integrase core domain DDE_Tnp_ISAZ013 PF07592.11 gi|89255453|ref|YP_512814.1| - 0.17 10.9 0.3 1.1 8.1 0.1 2.0 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain Na_H_Exchanger PF00999.21 gi|89255454|ref|YP_512815.1| - 3.5e-22 78.7 17.9 3.8e-22 78.6 17.9 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Tmemb_14 PF03647.13 gi|89255454|ref|YP_512815.1| - 4.4 8.1 10.9 12 6.7 4.7 3.1 1 1 1 2 2 2 0 Transmembrane proteins 14C TPP_enzyme_C PF02775.21 gi|89255455|ref|YP_512816.1| - 1.1e-26 93.4 0.0 1.5e-24 86.5 0.0 2.4 2 1 0 2 2 2 2 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|89255455|ref|YP_512816.1| - 1.8e-18 66.6 0.0 4.6e-18 65.3 0.0 1.7 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain CRISPR_Cas2 PF09827.9 gi|89255456|ref|YP_512817.1| - 0.02 15.0 0.0 0.025 14.8 0.0 1.2 1 0 0 1 1 1 0 CRISPR associated protein Cas2 DUF2650 PF10853.8 gi|89255456|ref|YP_512817.1| - 0.021 14.5 2.2 0.03 14.0 2.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2650) Peptidase_C1 PF00112.23 gi|89255456|ref|YP_512817.1| - 0.044 13.9 0.1 0.044 13.9 0.1 1.1 1 0 0 1 1 1 0 Papain family cysteine protease Peptidase_S49 PF01343.18 gi|89255457|ref|YP_512818.1| - 4.7e-34 117.6 0.0 9.4e-34 116.6 0.0 1.5 2 0 0 2 2 2 1 Peptidase family S49 CLP_protease PF00574.23 gi|89255457|ref|YP_512818.1| - 1.3e-05 25.1 0.6 5.2e-05 23.2 0.4 1.9 2 0 0 2 2 2 1 Clp protease OmpH PF03938.14 gi|89255458|ref|YP_512819.1| - 6.4e-16 58.9 20.7 9.8e-16 58.3 20.7 1.3 1 0 0 1 1 1 1 Outer membrane protein (OmpH-like) FapA PF03961.13 gi|89255458|ref|YP_512819.1| - 0.001 17.8 2.3 0.0011 17.6 2.3 1.1 1 0 0 1 1 1 1 Flagellar Assembly Protein A PRKG1_interact PF15898.5 gi|89255458|ref|YP_512819.1| - 0.0011 19.8 10.3 0.0017 19.3 10.3 1.3 1 0 0 1 1 1 1 cGMP-dependent protein kinase interacting domain SAS4 PF15460.6 gi|89255458|ref|YP_512819.1| - 0.043 13.9 5.4 0.97 9.6 0.9 2.2 2 0 0 2 2 2 0 Something about silencing, SAS, complex subunit 4 TMCO5 PF14992.6 gi|89255458|ref|YP_512819.1| - 0.055 13.0 8.8 0.063 12.9 8.8 1.1 1 0 0 1 1 1 0 TMCO5 family DUF3391 PF11871.8 gi|89255458|ref|YP_512819.1| - 0.17 12.4 7.1 0.34 11.5 7.1 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF3391) Prominin PF05478.11 gi|89255458|ref|YP_512819.1| - 0.28 9.1 5.0 0.33 8.9 5.0 1.1 1 0 0 1 1 1 0 Prominin Adaptin_binding PF10199.9 gi|89255458|ref|YP_512819.1| - 0.28 11.8 10.4 0.37 11.4 10.4 1.2 1 0 0 1 1 1 0 Alpha and gamma adaptin binding protein p34 Atg14 PF10186.9 gi|89255458|ref|YP_512819.1| - 0.3 10.2 5.3 0.37 9.8 5.3 1.1 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 Mce4_CUP1 PF11887.8 gi|89255458|ref|YP_512819.1| - 0.51 9.7 6.9 0.79 9.1 0.2 2.1 2 0 0 2 2 2 0 Cholesterol uptake porter CUP1 of Mce4, putative AAA_13 PF13166.6 gi|89255458|ref|YP_512819.1| - 0.71 8.4 12.9 0.8 8.3 12.9 1.0 1 0 0 1 1 1 0 AAA domain Muted PF14942.6 gi|89255458|ref|YP_512819.1| - 1.3 9.3 13.0 1.7 9.0 12.4 1.4 1 1 0 1 1 1 0 Organelle biogenesis, Muted-like protein Vfa1 PF08432.10 gi|89255458|ref|YP_512819.1| - 2.2 8.6 14.0 3 8.1 14.0 1.2 1 0 0 1 1 1 0 AAA-ATPase Vps4-associated protein 1 YabA PF06156.13 gi|89255458|ref|YP_512819.1| - 3.1 8.5 8.1 5 7.8 7.4 1.7 1 1 1 2 2 2 0 Initiation control protein YabA V_ATPase_I PF01496.19 gi|89255458|ref|YP_512819.1| - 4.1 5.2 9.4 8.9 4.1 9.4 1.4 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family SOAR PF16533.5 gi|89255458|ref|YP_512819.1| - 4.3 7.4 9.1 2.5 8.1 4.9 2.1 2 0 0 2 2 2 0 STIM1 Orai1-activating region BRE1 PF08647.11 gi|89255458|ref|YP_512819.1| - 4.4 7.4 19.6 0.29 11.2 2.2 2.4 1 1 1 2 2 2 0 BRE1 E3 ubiquitin ligase SLX9 PF15341.6 gi|89255458|ref|YP_512819.1| - 4.5 7.7 15.1 7.1 7.0 15.1 1.3 1 1 0 1 1 1 0 Ribosome biogenesis protein SLX9 DUF948 PF06103.11 gi|89255458|ref|YP_512819.1| - 5.2 7.4 8.1 72 3.7 1.0 2.4 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) TssO PF17561.2 gi|89255458|ref|YP_512819.1| - 6.9 6.8 12.6 0.68 10.0 1.5 2.1 1 1 1 2 2 2 0 Type VI secretion system, TssO Rhodanese PF00581.20 gi|89255459|ref|YP_512820.1| - 4.5e-13 49.6 0.1 5.7e-13 49.3 0.1 1.2 1 0 0 1 1 1 1 Rhodanese-like domain SecB PF02556.14 gi|89255460|ref|YP_512821.1| - 5.1e-50 169.0 0.5 5.8e-50 168.9 0.5 1.0 1 0 0 1 1 1 1 Preprotein translocase subunit SecB RecA PF00154.21 gi|89255461|ref|YP_512822.1| - 9.7e-143 474.3 4.0 1.2e-142 474.1 4.0 1.1 1 0 0 1 1 1 1 recA bacterial DNA recombination protein Rad51 PF08423.11 gi|89255461|ref|YP_512822.1| - 4.2e-10 39.3 0.5 2.1e-09 37.0 0.5 1.8 1 1 0 1 1 1 1 Rad51 ATPase PF06745.13 gi|89255461|ref|YP_512822.1| - 3.8e-08 33.0 2.0 4.5e-06 26.2 2.0 2.8 1 1 0 1 1 1 1 KaiC ATPase_2 PF01637.18 gi|89255461|ref|YP_512822.1| - 0.00028 20.9 0.1 0.00095 19.1 0.0 1.8 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_25 PF13481.6 gi|89255461|ref|YP_512822.1| - 0.0037 16.9 0.8 0.092 12.3 0.8 2.2 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|89255461|ref|YP_512822.1| - 0.018 15.4 0.0 0.032 14.6 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain AAA_24 PF13479.6 gi|89255461|ref|YP_512822.1| - 0.027 14.2 0.0 0.056 13.2 0.0 1.6 1 1 0 1 1 1 0 AAA domain RecX PF02631.16 gi|89255462|ref|YP_512823.1| - 1.5e-26 93.3 1.0 1.8e-26 93.0 1.0 1.2 1 0 0 1 1 1 1 RecX family Transposase_mut PF00872.18 gi|89255462|ref|YP_512823.1| - 0.013 14.4 0.0 0.018 13.9 0.0 1.1 1 0 0 1 1 1 0 Transposase, Mutator family Telomere_res PF16684.5 gi|89255462|ref|YP_512823.1| - 0.017 14.6 0.3 0.02 14.4 0.2 1.3 1 1 0 1 1 1 0 Telomere resolvase SSB PF00436.25 gi|89255463|ref|YP_512824.1| - 1.7e-34 118.0 1.7 2.8e-34 117.3 1.7 1.3 1 0 0 1 1 1 1 Single-strand binding protein family SH3_5 PF08460.10 gi|89255463|ref|YP_512824.1| - 0.11 12.7 0.3 0.33 11.1 0.1 1.9 2 0 0 2 2 2 0 Bacterial SH3 domain DUF4124 PF13511.6 gi|89255463|ref|YP_512824.1| - 0.31 11.4 1.0 0.44 10.9 0.3 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4124) Acetate_kinase PF00871.17 gi|89255464|ref|YP_512825.1| - 9.4e-140 465.7 5.8 1.1e-139 465.5 5.8 1.0 1 0 0 1 1 1 1 Acetokinase family ROK PF00480.20 gi|89255464|ref|YP_512825.1| - 0.00022 20.8 1.9 0.0018 17.8 1.9 2.3 1 1 0 1 1 1 1 ROK family PTA_PTB PF01515.19 gi|89255465|ref|YP_512826.1| - 1.8e-119 398.8 1.8 2.7e-119 398.2 1.8 1.3 1 0 0 1 1 1 1 Phosphate acetyl/butaryl transferase DRTGG PF07085.12 gi|89255465|ref|YP_512826.1| - 6e-18 64.6 2.2 2.6e-17 62.5 1.7 2.4 2 0 0 2 2 2 1 DRTGG domain AAA_26 PF13500.6 gi|89255465|ref|YP_512826.1| - 2.5e-11 43.8 1.5 4.2e-08 33.2 0.2 3.0 2 1 0 2 2 2 1 AAA domain DUF507 PF04368.13 gi|89255465|ref|YP_512826.1| - 0.021 14.8 1.6 0.44 10.4 0.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF507) DDE_3 PF13358.6 gi|89255466|ref|YP_512827.1| - 2.3e-30 105.3 0.1 7.9e-30 103.5 0.0 1.8 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.16 gi|89255466|ref|YP_512827.1| - 0.0029 17.6 1.5 0.0084 16.2 0.6 2.3 2 1 0 2 2 2 1 Transposase HTH_29 PF13551.6 gi|89255466|ref|YP_512827.1| - 0.0033 17.4 0.0 0.008 16.2 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn helix HTH_40 PF14493.6 gi|89255466|ref|YP_512827.1| - 0.0099 16.3 0.1 0.069 13.6 0.0 2.3 3 1 0 3 3 3 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|89255466|ref|YP_512827.1| - 0.026 14.6 0.0 0.073 13.2 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|89255466|ref|YP_512827.1| - 0.12 12.2 0.0 0.34 10.8 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain rve PF00665.26 gi|89255466|ref|YP_512827.1| - 0.15 12.3 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 Integrase core domain DDE_Tnp_ISAZ013 PF07592.11 gi|89255466|ref|YP_512827.1| - 0.17 10.9 0.3 1.1 8.1 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain Glyco_transf_4 PF13439.6 gi|89255467|ref|YP_512828.1| - 9.6e-05 22.4 0.5 0.0019 18.2 0.5 2.0 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_transf_5 PF08323.11 gi|89255467|ref|YP_512828.1| - 0.009 15.7 0.7 0.056 13.1 0.4 1.9 1 1 0 1 1 1 1 Starch synthase catalytic domain Glyco_trans_4_4 PF13579.6 gi|89255467|ref|YP_512828.1| - 0.16 12.4 0.1 2 8.8 0.0 2.0 1 1 1 2 2 2 0 Glycosyl transferase 4-like domain tRNA-synt_2 PF00152.20 gi|89255468|ref|YP_512829.1| - 3.2e-106 355.0 0.0 3.8e-106 354.7 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) GAD PF02938.14 gi|89255468|ref|YP_512829.1| - 4.1e-24 84.6 0.1 7.1e-24 83.9 0.1 1.4 1 0 0 1 1 1 1 GAD domain tRNA_anti-codon PF01336.25 gi|89255468|ref|YP_512829.1| - 3.1e-19 68.7 0.4 6.3e-19 67.8 0.4 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|89255468|ref|YP_512829.1| - 3.6e-06 26.6 1.6 0.0029 17.1 0.2 2.7 3 0 0 3 3 3 2 tRNA synthetases class II core domain (F) tRNA-synt_2b PF00587.25 gi|89255468|ref|YP_512829.1| - 0.038 14.0 0.0 0.22 11.5 0.0 2.3 2 1 0 2 2 2 0 tRNA synthetase class II core domain (G, H, P, S and T) MFS_1 PF07690.16 gi|89255469|ref|YP_512830.1| - 1e-24 87.1 46.0 1e-24 87.1 46.0 1.2 1 1 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|89255469|ref|YP_512830.1| - 4.8e-11 42.2 18.7 4.8e-11 42.2 18.7 2.1 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_2 PF13347.6 gi|89255469|ref|YP_512830.1| - 0.16 10.5 39.5 0.14 10.7 11.5 2.4 1 1 1 2 2 2 0 MFS/sugar transport protein DDE_3 PF13358.6 gi|89255470|ref|YP_512831.1| - 9.9e-30 103.2 0.2 3.2e-29 101.6 0.0 1.8 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.16 gi|89255470|ref|YP_512831.1| - 0.0029 17.6 1.5 0.0084 16.2 0.6 2.3 2 1 0 2 2 2 1 Transposase HTH_29 PF13551.6 gi|89255470|ref|YP_512831.1| - 0.0033 17.4 0.0 0.008 16.2 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn helix HTH_40 PF14493.6 gi|89255470|ref|YP_512831.1| - 0.011 16.2 0.1 0.069 13.6 0.0 2.3 3 1 0 3 3 3 0 Helix-turn-helix domain HTH_28 PF13518.6 gi|89255470|ref|YP_512831.1| - 0.026 14.6 0.0 0.073 13.2 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain CENP-B_N PF04218.13 gi|89255470|ref|YP_512831.1| - 0.097 12.3 0.0 0.98 9.1 0.0 2.5 3 0 0 3 3 3 0 CENP-B N-terminal DNA-binding domain HTH_23 PF13384.6 gi|89255470|ref|YP_512831.1| - 0.12 12.2 0.0 0.34 10.8 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain rve PF00665.26 gi|89255470|ref|YP_512831.1| - 0.15 12.3 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 Integrase core domain DDE_Tnp_ISAZ013 PF07592.11 gi|89255470|ref|YP_512831.1| - 0.17 10.9 0.3 1.1 8.1 0.1 2.0 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain Trp_Tyr_perm PF03222.13 gi|89255471|ref|YP_512832.1| - 2.2e-22 79.6 35.7 2.8e-22 79.3 35.7 1.0 1 0 0 1 1 1 1 Tryptophan/tyrosine permease family Aa_trans PF01490.18 gi|89255471|ref|YP_512832.1| - 1.3e-05 24.1 46.4 0.00019 20.2 29.4 2.3 1 1 0 2 2 2 2 Transmembrane amino acid transporter protein AA_permease_2 PF13520.6 gi|89255471|ref|YP_512832.1| - 0.0048 15.8 50.2 0.016 14.0 50.2 1.7 1 1 0 1 1 1 1 Amino acid permease ATP1G1_PLM_MAT8 PF02038.16 gi|89255471|ref|YP_512832.1| - 0.075 12.5 0.5 0.075 12.5 0.5 4.5 6 1 0 6 6 6 0 ATP1G1/PLM/MAT8 family Dabb PF07876.12 gi|89255472|ref|YP_512833.1| - 2.8e-10 40.7 0.0 3e-10 40.6 0.0 1.0 1 0 0 1 1 1 1 Stress responsive A/B Barrel Domain NAD_binding_2 PF03446.15 gi|89255473|ref|YP_512834.1| - 2e-17 63.8 0.0 2.2e-17 63.7 0.0 1.0 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|89255473|ref|YP_512834.1| - 1.4e-10 41.6 0.0 1.5e-10 41.5 0.0 1.1 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.20 gi|89255473|ref|YP_512834.1| - 7e-10 39.1 0.0 3.5e-09 36.9 0.0 1.6 1 1 1 2 2 2 1 Shikimate / quinate 5-dehydrogenase 2-Hacid_dh_C PF02826.19 gi|89255473|ref|YP_512834.1| - 1.3e-07 31.1 0.0 1.4e-07 31.1 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|89255473|ref|YP_512834.1| - 0.0007 19.2 0.0 0.00077 19.1 0.0 1.1 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain 3HCDH_N PF02737.18 gi|89255473|ref|YP_512834.1| - 0.00097 19.1 0.1 0.002 18.0 0.0 1.5 1 1 1 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain OCD_Mu_crystall PF02423.15 gi|89255473|ref|YP_512834.1| - 0.0013 17.8 0.0 0.0013 17.7 0.0 1.1 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family ApbA PF02558.16 gi|89255473|ref|YP_512834.1| - 0.0017 18.0 0.1 0.0029 17.3 0.0 1.5 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Sacchrp_dh_NADP PF03435.18 gi|89255473|ref|YP_512834.1| - 0.0051 17.1 0.0 0.0063 16.8 0.0 1.3 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain TrkA_N PF02254.18 gi|89255473|ref|YP_512834.1| - 0.011 16.0 0.5 0.087 13.1 0.5 2.0 1 1 0 1 1 1 0 TrkA-N domain GFO_IDH_MocA PF01408.22 gi|89255473|ref|YP_512834.1| - 0.017 16.0 0.0 0.019 15.8 0.0 1.1 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold UDPG_MGDP_dh_C PF03720.15 gi|89255473|ref|YP_512834.1| - 0.026 15.0 0.0 0.031 14.7 0.0 1.2 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_binding_7 PF13241.6 gi|89255473|ref|YP_512834.1| - 0.061 13.8 0.0 0.072 13.5 0.0 1.1 1 0 0 1 1 1 0 Putative NAD(P)-binding DpaA_N PF16924.5 gi|89255473|ref|YP_512834.1| - 0.1 12.7 0.0 0.12 12.5 0.0 1.1 1 0 0 1 1 1 0 Dipicolinate synthase subunit A N-terminal domain NAD_binding_11 PF14833.6 gi|89255474|ref|YP_512835.1| - 2.7e-11 43.8 0.0 3.4e-11 43.5 0.0 1.1 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NAD_binding_2 PF03446.15 gi|89255474|ref|YP_512835.1| - 0.15 12.2 0.0 0.38 10.9 0.0 1.6 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase OTCace_N PF02729.21 gi|89255475|ref|YP_512836.1| - 1e-45 155.4 0.0 1.6e-45 154.8 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 gi|89255475|ref|YP_512836.1| - 9.1e-25 87.6 0.0 1.8e-24 86.6 0.0 1.5 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HSBP1 PF06825.12 gi|89255475|ref|YP_512836.1| - 0.15 11.9 1.0 0.27 11.1 0.1 1.9 2 0 0 2 2 2 0 Heat shock factor binding protein 1 CPSase_L_D2 PF02786.17 gi|89255476|ref|YP_512837.1| - 8.4e-108 358.7 1.4 2.6e-70 236.2 0.1 2.3 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_D3 PF02787.19 gi|89255476|ref|YP_512837.1| - 1e-37 129.2 0.1 4.5e-37 127.1 0.1 2.2 2 0 0 2 2 2 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATP-grasp PF02222.22 gi|89255476|ref|YP_512837.1| - 1.4e-17 63.8 0.2 1.5e-09 37.7 0.1 2.4 2 0 0 2 2 2 2 ATP-grasp domain MGS PF02142.22 gi|89255476|ref|YP_512837.1| - 1.3e-15 57.4 1.0 1.2e-14 54.3 0.1 3.0 3 1 1 4 4 4 1 MGS-like domain ATP-grasp_3 PF02655.14 gi|89255476|ref|YP_512837.1| - 1.4e-15 57.7 2.3 1.2e-10 41.6 0.2 2.6 2 0 0 2 2 2 2 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|89255476|ref|YP_512837.1| - 1.7e-13 50.6 1.2 4.3e-08 32.9 0.2 2.5 2 0 0 2 2 2 2 D-ala D-ala ligase C-terminus ATPgrasp_Ter PF15632.6 gi|89255476|ref|YP_512837.1| - 7.1e-13 48.4 0.2 2.1e-08 34.0 0.2 2.8 2 1 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_4 PF13535.6 gi|89255476|ref|YP_512837.1| - 1.3e-10 41.1 0.5 1.8e-05 24.4 0.1 3.4 3 0 0 3 3 3 2 ATP-grasp domain RimK PF08443.11 gi|89255476|ref|YP_512837.1| - 3.5e-08 33.3 1.3 0.00037 20.2 0.4 3.2 3 0 0 3 3 3 2 RimK-like ATP-grasp domain ATP-grasp_2 PF08442.10 gi|89255476|ref|YP_512837.1| - 3.5e-05 23.5 0.1 0.0061 16.2 0.0 2.8 2 0 0 2 2 2 1 ATP-grasp domain ATP-grasp_5 PF13549.6 gi|89255476|ref|YP_512837.1| - 0.066 12.7 0.0 7.7 5.9 0.0 2.4 2 0 0 2 2 2 0 ATP-grasp domain HTH_23 PF13384.6 gi|89255476|ref|YP_512837.1| - 0.079 12.8 0.2 9.9 6.1 0.0 3.4 3 0 0 3 3 3 0 Homeodomain-like domain PPDK_N PF01326.19 gi|89255476|ref|YP_512837.1| - 0.099 11.9 0.0 2.2 7.5 0.0 3.0 4 0 0 4 4 4 0 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CPSase_sm_chain PF00988.22 gi|89255477|ref|YP_512838.1| - 1e-48 164.4 0.0 2e-48 163.5 0.0 1.5 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.28 gi|89255477|ref|YP_512838.1| - 4.8e-47 160.2 0.0 9.1e-47 159.3 0.0 1.5 2 0 0 2 2 2 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|89255477|ref|YP_512838.1| - 2.1e-10 40.7 0.1 4.6e-08 33.1 0.1 2.6 1 1 0 2 2 2 1 Peptidase C26 DJ-1_PfpI PF01965.24 gi|89255477|ref|YP_512838.1| - 2.8e-05 24.0 0.0 5e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 DJ-1/PfpI family His_Phos_2 PF00328.22 gi|89255478|ref|YP_512839.1| - 1.4e-22 80.6 0.1 1.9e-13 50.6 0.0 3.1 2 1 1 3 3 3 3 Histidine phosphatase superfamily (branch 2) TPMT PF05724.11 gi|89255479|ref|YP_512840.1| - 1.8e-44 152.0 0.0 2e-44 151.8 0.0 1.0 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) Amidohydro_1 PF01979.20 gi|89255480|ref|YP_512841.1| - 9.9e-19 67.8 0.4 1.6e-18 67.2 0.4 1.3 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|89255480|ref|YP_512841.1| - 4.1e-09 36.4 0.0 1.1e-06 28.4 0.0 2.2 2 0 0 2 2 2 2 Amidohydrolase family DUF4325 PF14213.6 gi|89255481|ref|YP_512842.1| - 4.7e-14 51.8 0.8 4.7e-14 51.8 0.8 2.5 2 1 1 3 3 3 1 STAS-like domain of unknown function (DUF4325) HATPase_c PF02518.26 gi|89255481|ref|YP_512842.1| - 0.0039 17.7 0.2 0.0091 16.5 0.2 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HTH_11 PF08279.12 gi|89255481|ref|YP_512842.1| - 0.0051 16.7 0.0 0.02 14.8 0.0 2.0 1 0 0 1 1 1 1 HTH domain CtsR_C PF17727.1 gi|89255481|ref|YP_512842.1| - 0.0068 16.5 2.3 7.9 6.7 0.1 3.4 3 0 0 3 3 3 2 CtsR C-terminal dimerization domain HATPase_c_2 PF13581.6 gi|89255481|ref|YP_512842.1| - 0.0079 16.2 0.0 0.017 15.1 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HTH_22 PF13309.6 gi|89255481|ref|YP_512842.1| - 0.023 14.8 0.0 0.093 12.8 0.0 2.1 2 0 0 2 2 2 0 HTH domain HTH_Tnp_4 PF13613.6 gi|89255481|ref|YP_512842.1| - 0.027 14.2 0.0 0.44 10.3 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix of DDE superfamily endonuclease HTH_23 PF13384.6 gi|89255481|ref|YP_512842.1| - 0.036 13.9 0.1 0.093 12.6 0.0 1.7 2 0 0 2 2 2 0 Homeodomain-like domain GntR PF00392.21 gi|89255481|ref|YP_512842.1| - 0.062 13.0 0.0 4.4 7.0 0.0 2.8 3 0 0 3 3 3 0 Bacterial regulatory proteins, gntR family HTH_28 PF13518.6 gi|89255481|ref|YP_512842.1| - 0.084 13.0 0.0 0.35 11.0 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|89255481|ref|YP_512842.1| - 0.1 12.6 0.1 0.66 10.0 0.0 2.3 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_7 PF02796.15 gi|89255481|ref|YP_512842.1| - 0.11 12.6 0.0 0.41 10.7 0.0 2.0 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_24 PF13412.6 gi|89255481|ref|YP_512842.1| - 0.12 12.0 1.8 0.2 11.2 0.0 2.4 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding DUF1415 PF07209.12 gi|89255483|ref|YP_512844.1| - 8.9e-69 230.6 0.4 1e-68 230.4 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1415) FUSC_2 PF13515.6 gi|89255484|ref|YP_512845.1| - 1.4e-14 54.3 40.2 1e-10 41.8 17.4 2.6 2 1 0 2 2 2 2 Fusaric acid resistance protein-like FUSC PF04632.12 gi|89255484|ref|YP_512845.1| - 6.2e-08 31.7 30.9 8.4e-07 27.9 8.9 2.1 1 1 1 2 2 2 2 Fusaric acid resistance protein family ArAE_1 PF06081.11 gi|89255484|ref|YP_512845.1| - 5.6e-05 23.3 38.1 0.00096 19.3 14.5 3.3 3 1 0 3 3 3 2 Aromatic acid exporter family member 1 HlyD_D23 PF16576.5 gi|89255485|ref|YP_512846.1| - 1.1e-17 63.9 2.1 1.1e-16 60.7 2.1 2.0 1 1 0 1 1 1 1 Barrel-sandwich domain of CusB or HlyD membrane-fusion HlyD_3 PF13437.6 gi|89255485|ref|YP_512846.1| - 2.2e-14 54.0 0.1 1e-10 42.3 0.0 2.5 2 0 0 2 2 2 2 HlyD family secretion protein Biotin_lipoyl_2 PF13533.6 gi|89255485|ref|YP_512846.1| - 2e-11 43.5 0.0 5.6e-07 29.3 0.0 2.7 2 0 0 2 2 2 2 Biotin-lipoyl like Biotin_lipoyl PF00364.22 gi|89255485|ref|YP_512846.1| - 1.3e-06 28.2 0.2 0.0036 17.1 0.0 2.6 2 0 0 2 2 2 2 Biotin-requiring enzyme FtsH_ext PF06480.15 gi|89255485|ref|YP_512846.1| - 0.0013 19.0 0.3 0.0013 19.0 0.3 1.9 2 1 0 2 2 2 1 FtsH Extracellular PTS_EIIA_1 PF00358.20 gi|89255485|ref|YP_512846.1| - 0.034 13.9 0.1 0.63 9.8 0.0 2.4 2 0 0 2 2 2 0 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DRY_EERY PF09750.9 gi|89255485|ref|YP_512846.1| - 0.14 12.4 0.9 0.22 11.8 0.9 1.4 1 0 0 1 1 1 0 Alternative splicing regulator OEP PF02321.18 gi|89255485|ref|YP_512846.1| - 0.15 11.9 4.9 0.22 11.3 4.9 1.2 1 0 0 1 1 1 0 Outer membrane efflux protein HlyD_2 PF12700.7 gi|89255485|ref|YP_512846.1| - 1.5 7.5 25.7 39 2.8 25.7 2.6 1 1 0 1 1 1 0 HlyD family secretion protein DUF3568 PF12092.8 gi|89255486|ref|YP_512847.1| - 1.7e-33 115.3 4.2 1.9e-33 115.2 4.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3568) FXR_C1 PF16096.5 gi|89255486|ref|YP_512847.1| - 0.097 12.9 0.2 0.18 12.0 0.2 1.5 1 0 0 1 1 1 0 Fragile X-related 1 protein C-terminal region 2 LysR_substrate PF03466.20 gi|89255487|ref|YP_512848.1| - 4.4e-19 68.7 0.0 6.4e-19 68.1 0.0 1.2 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 gi|89255487|ref|YP_512848.1| - 4.2e-14 52.2 0.1 7.5e-14 51.4 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family Reo_P9 PF06043.11 gi|89255487|ref|YP_512848.1| - 0.038 13.4 0.0 0.055 12.9 0.0 1.2 1 0 0 1 1 1 0 Reovirus P9-like family SOUL PF04832.12 gi|89255488|ref|YP_512849.1| - 2e-32 112.7 1.1 2.4e-32 112.4 1.1 1.1 1 0 0 1 1 1 1 SOUL heme-binding protein MBG_2 PF18676.1 gi|89255488|ref|YP_512849.1| - 0.06 14.0 0.1 0.29 11.8 0.1 1.9 2 0 0 2 2 2 0 MBG domain (YGX type) DDE_Tnp_1_2 PF13586.6 gi|89255489|ref|YP_512850.1| - 1e-13 51.5 0.0 1.8e-13 50.6 0.0 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|89255489|ref|YP_512850.1| - 4.2e-12 46.2 2.0 3.8e-11 43.0 2.0 1.9 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 gi|89255489|ref|YP_512850.1| - 6.9e-08 32.7 0.0 9.7e-08 32.2 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.6 gi|89255489|ref|YP_512850.1| - 0.00017 21.3 0.2 0.00023 20.9 0.2 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease DUF4096 PF13340.6 gi|89255489|ref|YP_512850.1| - 0.0056 16.9 0.0 0.011 15.9 0.0 1.5 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) CM_2 PF01817.21 gi|89255490|ref|YP_512851.1| - 1.9e-06 28.1 0.9 9.3e-06 25.9 0.1 2.2 2 0 0 2 2 2 1 Chorismate mutase type II Trp_halogenase PF04820.14 gi|89255490|ref|YP_512851.1| - 0.026 13.4 0.6 0.032 13.1 0.6 1.1 1 0 0 1 1 1 0 Tryptophan halogenase Raf1_N PF18578.1 gi|89255490|ref|YP_512851.1| - 0.05 14.1 0.6 0.073 13.6 0.6 1.3 1 0 0 1 1 1 0 Rubisco accumulation factor 1 alpha helical domain CENP-H PF05837.12 gi|89255490|ref|YP_512851.1| - 0.79 10.1 5.5 0.48 10.8 1.4 2.1 1 1 1 2 2 2 0 Centromere protein H (CENP-H) DUF2126 PF09899.9 gi|89255491|ref|YP_512852.1| - 0 1263.6 0.0 0 1263.3 0.0 1.0 1 0 0 1 1 1 1 Putative amidoligase enzyme (DUF2126) Transglut_core PF01841.19 gi|89255491|ref|YP_512852.1| - 3e-20 72.7 0.0 7.1e-20 71.5 0.0 1.6 1 0 0 1 1 1 1 Transglutaminase-like superfamily Bact_transglu_N PF08379.10 gi|89255491|ref|YP_512852.1| - 0.00011 23.1 0.0 0.00031 21.6 0.0 1.9 1 0 0 1 1 1 1 Bacterial transglutaminase-like N-terminal region DUF553 PF04473.12 gi|89255491|ref|YP_512852.1| - 0.0033 17.0 0.0 0.0062 16.1 0.0 1.4 1 0 0 1 1 1 1 Transglutaminase-like domain OMPdecase PF00215.24 gi|89255492|ref|YP_512853.1| - 1.6e-23 83.5 0.0 1.9e-23 83.3 0.0 1.0 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family CbiX PF01903.17 gi|89255492|ref|YP_512853.1| - 0.11 12.8 0.0 0.83 10.0 0.0 2.2 1 1 1 2 2 2 0 CbiX PEP_mutase PF13714.6 gi|89255492|ref|YP_512853.1| - 0.12 11.9 0.0 5.1 6.5 0.0 2.2 2 0 0 2 2 2 0 Phosphoenolpyruvate phosphomutase DHO_dh PF01180.21 gi|89255493|ref|YP_512854.1| - 6.1e-14 51.9 1.0 6.2e-12 45.3 1.0 2.6 1 1 0 1 1 1 1 Dihydroorotate dehydrogenase His_biosynth PF00977.21 gi|89255493|ref|YP_512854.1| - 4.7e-05 23.0 0.0 8.4e-05 22.1 0.0 1.3 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.17 gi|89255493|ref|YP_512854.1| - 0.0027 16.8 0.0 0.96 8.5 0.0 2.2 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) PcrB PF01884.17 gi|89255493|ref|YP_512854.1| - 0.15 11.5 0.0 0.21 11.0 0.0 1.2 1 0 0 1 1 1 0 PcrB family IMPDH PF00478.25 gi|89255493|ref|YP_512854.1| - 0.16 10.9 0.0 0.25 10.3 0.0 1.2 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain PDH PF02153.17 gi|89255495|ref|YP_512856.1| - 5.9e-29 100.9 0.0 7.2e-29 100.6 0.0 1.0 1 0 0 1 1 1 1 Prephenate dehydrogenase DUF5641 PF18701.1 gi|89255495|ref|YP_512856.1| - 0.0052 16.9 0.0 0.0086 16.2 0.0 1.3 1 0 0 1 1 1 1 Family of unknown function (DUF5641) F420_oxidored PF03807.17 gi|89255495|ref|YP_512856.1| - 0.0081 16.7 1.1 0.12 12.9 0.0 2.5 2 1 1 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent Tyr_Deacylase PF02580.16 gi|89255496|ref|YP_512857.1| - 1e-51 175.3 0.0 1.2e-51 175.0 0.0 1.0 1 0 0 1 1 1 1 D-Tyr-tRNA(Tyr) deacylase tRNA-Thr_ED PF08915.11 gi|89255496|ref|YP_512857.1| - 0.11 12.6 0.5 3.8 7.6 0.2 2.1 2 0 0 2 2 2 0 Archaea-specific editing domain of threonyl-tRNA synthetase MFS_1 PF07690.16 gi|89255497|ref|YP_512858.1| - 1.4e-12 47.2 23.6 2e-09 36.9 14.1 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Bac_export_2 PF01312.19 gi|89255497|ref|YP_512858.1| - 5.8 6.0 6.9 1.6 7.8 3.0 1.9 1 1 1 2 2 2 0 FlhB HrpN YscU SpaS Family GWT1 PF06423.12 gi|89255497|ref|YP_512858.1| - 7.1 6.7 11.0 8 6.6 8.3 2.4 2 1 0 2 2 2 0 GWT1 MFS_1 PF07690.16 gi|89255498|ref|YP_512859.1| - 0.0019 17.2 13.2 0.0029 16.6 13.2 1.3 1 0 0 1 1 1 1 Major Facilitator Superfamily Glyco_hydro_32C PF08244.12 gi|89255499|ref|YP_512860.1| - 2e-06 27.9 0.8 4.5e-06 26.7 0.8 1.5 1 1 0 1 1 1 1 Glycosyl hydrolases family 32 C terminal YolD PF08863.10 gi|89255499|ref|YP_512860.1| - 0.13 12.3 4.1 1.1 9.4 0.1 2.6 3 0 0 3 3 3 0 YolD-like protein Tudor_FRX1 PF18336.1 gi|89255499|ref|YP_512860.1| - 3.7 7.5 4.8 28 4.7 0.1 3.6 4 0 0 4 4 4 0 Fragile X mental retardation Tudor domain Glyco_hydro_32N PF00251.20 gi|89255500|ref|YP_512861.1| - 1.8e-70 237.9 7.3 2.3e-70 237.6 7.3 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 32 N-terminal domain Glyco_hydro_43 PF04616.14 gi|89255500|ref|YP_512861.1| - 1.8e-05 24.2 8.5 0.00015 21.2 2.0 2.6 2 1 1 3 3 3 2 Glycosyl hydrolases family 43 DDE_3 PF13358.6 gi|89255501|ref|YP_512862.1| - 2.3e-30 105.3 0.1 7.9e-30 103.5 0.0 1.8 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.16 gi|89255501|ref|YP_512862.1| - 0.0029 17.6 1.5 0.0084 16.2 0.6 2.3 2 1 0 2 2 2 1 Transposase HTH_29 PF13551.6 gi|89255501|ref|YP_512862.1| - 0.0033 17.4 0.0 0.008 16.2 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn helix HTH_40 PF14493.6 gi|89255501|ref|YP_512862.1| - 0.0099 16.3 0.1 0.069 13.6 0.0 2.3 3 1 0 3 3 3 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|89255501|ref|YP_512862.1| - 0.026 14.6 0.0 0.073 13.2 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|89255501|ref|YP_512862.1| - 0.12 12.2 0.0 0.34 10.8 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain rve PF00665.26 gi|89255501|ref|YP_512862.1| - 0.15 12.3 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 Integrase core domain DDE_Tnp_ISAZ013 PF07592.11 gi|89255501|ref|YP_512862.1| - 0.17 10.9 0.3 1.1 8.1 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain Nitroreductase PF00881.24 gi|89255503|ref|YP_512864.1| - 1.5e-29 103.2 0.0 2.3e-29 102.6 0.0 1.3 1 1 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|89255503|ref|YP_512864.1| - 1.8e-12 47.3 0.5 0.00021 20.9 0.0 3.1 2 1 1 3 3 3 3 Putative TM nitroreductase DUF1275 PF06912.11 gi|89255504|ref|YP_512865.1| - 1.4e-24 87.1 17.3 1.7e-24 86.8 17.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1275) DUF2516 PF10724.9 gi|89255504|ref|YP_512865.1| - 1.3 9.4 6.2 1.2 9.4 0.4 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2516) Trp_Tyr_perm PF03222.13 gi|89255505|ref|YP_512866.1| - 1.5e-93 314.0 43.0 1.9e-93 313.6 43.0 1.0 1 0 0 1 1 1 1 Tryptophan/tyrosine permease family Aa_trans PF01490.18 gi|89255505|ref|YP_512866.1| - 4.3e-06 25.7 46.0 0.00014 20.8 45.8 2.8 1 1 0 1 1 1 1 Transmembrane amino acid transporter protein AA_permease_2 PF13520.6 gi|89255505|ref|YP_512866.1| - 0.00045 19.2 58.0 0.00092 18.1 58.0 1.6 1 1 0 1 1 1 1 Amino acid permease GidB PF02527.15 gi|89255506|ref|YP_512867.1| - 2e-50 170.7 0.2 2.6e-50 170.3 0.2 1.2 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G Methyltransf_31 PF13847.6 gi|89255506|ref|YP_512867.1| - 8e-05 22.5 0.1 0.00016 21.5 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.14 gi|89255506|ref|YP_512867.1| - 0.00064 19.3 0.0 0.00085 18.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_16 PF10294.9 gi|89255506|ref|YP_512867.1| - 0.0057 16.4 0.0 0.0085 15.8 0.0 1.3 1 0 0 1 1 1 1 Lysine methyltransferase TehB PF03848.14 gi|89255506|ref|YP_512867.1| - 0.0093 15.4 0.1 0.014 14.8 0.1 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB DUF2672 PF10878.8 gi|89255506|ref|YP_512867.1| - 0.029 14.3 0.9 0.13 12.2 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2672) Methyltransf_25 PF13649.6 gi|89255506|ref|YP_512867.1| - 0.04 14.6 0.0 0.091 13.5 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain CAT PF00302.18 gi|89255506|ref|YP_512867.1| - 0.071 13.0 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 Chloramphenicol acetyltransferase Methyltransf_12 PF08242.12 gi|89255506|ref|YP_512867.1| - 0.095 13.4 0.0 0.18 12.6 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain Ala_racemase_N PF01168.20 gi|89255507|ref|YP_512868.1| - 7.6e-22 78.0 0.0 8.5e-22 77.9 0.0 1.0 1 0 0 1 1 1 1 Alanine racemase, N-terminal domain Orn_Arg_deC_N PF02784.16 gi|89255507|ref|YP_512868.1| - 0.012 15.0 1.0 0.026 13.9 1.0 1.6 1 1 0 1 1 1 0 Pyridoxal-dependent decarboxylase, pyridoxal binding domain FUSC_2 PF13515.6 gi|89255508|ref|YP_512869.1| - 1.3e-11 44.7 12.8 1.3e-11 44.7 12.8 3.3 2 2 0 2 2 2 1 Fusaric acid resistance protein-like DUF3180 PF11377.8 gi|89255508|ref|YP_512869.1| - 1.9 8.6 6.8 2 8.5 1.8 2.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3180) LysR_substrate PF03466.20 gi|89255509|ref|YP_512870.1| - 1.3e-21 76.9 0.0 1.7e-21 76.6 0.0 1.0 1 0 0 1 1 1 1 LysR substrate binding domain MFS_1 PF07690.16 gi|89255510|ref|YP_512871.1| - 7.9e-32 110.5 44.4 7.9e-32 110.5 44.4 1.3 1 1 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|89255510|ref|YP_512871.1| - 5.4e-09 35.4 47.0 1e-07 31.2 13.8 3.2 2 1 1 3 3 3 2 Sugar (and other) transporter MFS_4 PF06779.14 gi|89255510|ref|YP_512871.1| - 1.3e-05 24.7 20.8 4.9e-05 22.8 18.7 2.3 1 1 1 2 2 2 1 Uncharacterised MFS-type transporter YbfB MFS_2 PF13347.6 gi|89255510|ref|YP_512871.1| - 2.9e-05 22.8 46.6 8.1e-05 21.3 23.5 2.6 1 1 1 2 2 2 2 MFS/sugar transport protein FAST_1 PF06743.15 gi|89255510|ref|YP_512871.1| - 0.052 13.5 0.4 4.4 7.3 0.1 2.6 2 0 0 2 2 2 0 FAST kinase-like protein, subdomain 1 SIS_2 PF13580.6 gi|89255511|ref|YP_512872.1| - 1.2e-33 116.0 0.3 1.5e-33 115.7 0.3 1.1 1 0 0 1 1 1 1 SIS domain SIS PF01380.22 gi|89255511|ref|YP_512872.1| - 2.6e-08 33.8 0.2 1.9e-06 27.8 0.1 2.2 1 1 1 2 2 2 2 SIS domain FAD_binding_4 PF01565.23 gi|89255511|ref|YP_512872.1| - 0.0077 16.0 0.1 2.7 7.7 0.0 2.2 2 0 0 2 2 2 2 FAD binding domain SmpA_OmlA PF04355.13 gi|89255512|ref|YP_512873.1| - 3.9e-17 61.8 0.1 4.6e-17 61.6 0.1 1.1 1 0 0 1 1 1 1 SmpA / OmlA family DUF3192 PF11399.8 gi|89255512|ref|YP_512873.1| - 0.032 14.2 0.0 0.043 13.8 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3192) Lgl_C PF08596.10 gi|89255512|ref|YP_512873.1| - 0.051 12.3 0.0 0.058 12.1 0.0 1.0 1 0 0 1 1 1 0 Lethal giant larvae(Lgl) like, C-terminal Ribosomal_S20p PF01649.18 gi|89255513|ref|YP_512874.1| - 1.2e-27 96.3 13.2 1.3e-27 96.2 13.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S20 DUF2680 PF10925.8 gi|89255513|ref|YP_512874.1| - 0.012 15.6 1.3 0.025 14.6 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2680) FERM_M PF00373.18 gi|89255513|ref|YP_512874.1| - 0.41 11.1 2.1 11 6.4 1.7 2.0 1 1 0 1 1 1 0 FERM central domain GTP_EFTU PF00009.27 gi|89255514|ref|YP_512875.1| - 4.7e-52 176.4 0.3 7.6e-52 175.7 0.3 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain LepA_C PF06421.12 gi|89255514|ref|YP_512875.1| - 5.4e-51 171.3 2.9 1e-50 170.4 2.9 1.5 1 0 0 1 1 1 1 GTP-binding protein LepA C-terminus EFG_C PF00679.24 gi|89255514|ref|YP_512875.1| - 3.7e-20 71.7 0.0 1e-19 70.4 0.0 1.8 1 0 0 1 1 1 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.25 gi|89255514|ref|YP_512875.1| - 9e-10 38.8 1.2 2.4e-09 37.5 1.2 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|89255514|ref|YP_512875.1| - 6.2e-05 23.1 0.0 0.00013 22.1 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase Ras PF00071.22 gi|89255514|ref|YP_512875.1| - 0.0001 22.0 0.0 0.00021 20.9 0.0 1.5 1 0 0 1 1 1 1 Ras family RF3_C PF16658.5 gi|89255514|ref|YP_512875.1| - 0.00091 19.1 0.0 0.0018 18.1 0.0 1.4 1 0 0 1 1 1 1 Class II release factor RF3, C-terminal domain EFG_II PF14492.6 gi|89255514|ref|YP_512875.1| - 0.0016 18.5 0.1 0.0076 16.3 0.1 2.2 1 1 0 1 1 1 1 Elongation Factor G, domain II SRPRB PF09439.10 gi|89255514|ref|YP_512875.1| - 0.006 16.0 0.0 0.013 15.0 0.0 1.6 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit Roc PF08477.13 gi|89255514|ref|YP_512875.1| - 0.041 14.1 0.0 0.12 12.6 0.0 1.8 1 1 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase tRNA_Me_trans PF03054.16 gi|89255515|ref|YP_512876.1| - 5.2e-140 466.3 0.1 5.9e-140 466.1 0.1 1.0 1 0 0 1 1 1 1 tRNA methyl transferase NAD_synthase PF02540.17 gi|89255515|ref|YP_512876.1| - 2e-08 33.7 0.0 3.7e-07 29.5 0.0 2.2 2 0 0 2 2 2 1 NAD synthase ThiI PF02568.14 gi|89255515|ref|YP_512876.1| - 0.00011 21.9 0.0 0.00021 21.0 0.0 1.4 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) QueC PF06508.13 gi|89255515|ref|YP_512876.1| - 0.00096 18.7 0.0 0.006 16.1 0.0 2.1 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 gi|89255515|ref|YP_512876.1| - 0.012 15.3 0.0 0.012 15.2 0.0 1.2 1 0 0 1 1 1 0 Asparagine synthase PAPS_reduct PF01507.19 gi|89255515|ref|YP_512876.1| - 0.073 13.1 0.0 0.54 10.3 0.0 2.1 1 1 1 2 2 2 0 Phosphoadenosine phosphosulfate reductase family ATP_bind_3 PF01171.20 gi|89255515|ref|YP_512876.1| - 0.17 11.7 0.1 0.46 10.2 0.1 2.0 1 1 0 1 1 1 0 PP-loop family Haem_oxygenas_2 PF14518.6 gi|89255516|ref|YP_512877.1| - 0.0072 16.1 0.0 0.013 15.3 0.0 1.3 1 0 0 1 1 1 1 Iron-containing redox enzyme Pep_deformylase PF01327.21 gi|89255517|ref|YP_512878.1| - 3.5e-51 173.0 0.2 4.2e-51 172.7 0.2 1.1 1 0 0 1 1 1 1 Polypeptide deformylase A_thal_3526 PF09713.10 gi|89255517|ref|YP_512878.1| - 0.1 12.9 0.1 7.4 6.9 0.0 2.6 2 0 0 2 2 2 0 Plant protein 1589 of unknown function (A_thal_3526) DMRL_synthase PF00885.19 gi|89255518|ref|YP_512879.1| - 7.4e-50 168.4 0.2 8.1e-50 168.3 0.2 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase CGGC PF08821.11 gi|89255518|ref|YP_512879.1| - 0.076 13.2 0.0 0.11 12.8 0.0 1.3 1 0 0 1 1 1 0 CGGC domain DHBP_synthase PF00926.19 gi|89255519|ref|YP_512880.1| - 9.2e-78 260.2 0.5 1.3e-77 259.7 0.5 1.2 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase GTP_cyclohydro2 PF00925.20 gi|89255519|ref|YP_512880.1| - 6.6e-52 175.4 0.0 1.5e-51 174.2 0.0 1.6 1 0 0 1 1 1 1 GTP cyclohydrolase II Lum_binding PF00677.17 gi|89255520|ref|YP_512881.1| - 2.6e-42 142.7 3.1 1.5e-20 72.9 0.1 2.0 2 0 0 2 2 2 2 Lumazine binding domain RibD_C PF01872.17 gi|89255521|ref|YP_512882.1| - 1.3e-31 110.0 0.0 2.7e-31 109.0 0.0 1.5 1 0 0 1 1 1 1 RibD C-terminal domain dCMP_cyt_deam_1 PF00383.23 gi|89255521|ref|YP_512882.1| - 4.4e-22 77.9 1.1 8.5e-22 76.9 1.1 1.5 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region MafB19-deam PF14437.6 gi|89255521|ref|YP_512882.1| - 9.5e-15 54.6 0.5 2.6e-14 53.2 0.5 1.7 1 1 0 1 1 1 1 MafB19-like deaminase Inv-AAD PF18785.1 gi|89255521|ref|YP_512882.1| - 2.1e-05 24.4 1.8 0.00075 19.4 1.8 2.4 1 1 0 1 1 1 1 Invertebrate-AID/APOBEC-deaminase zf-C2HC_2 PF13913.6 gi|89255521|ref|YP_512882.1| - 0.083 12.8 3.4 0.17 11.8 3.4 1.6 1 0 0 1 1 1 0 zinc-finger of a C2HC-type DDE_Tnp_1_2 PF13586.6 gi|89255522|ref|YP_512883.1| - 1e-13 51.5 0.0 1.8e-13 50.6 0.0 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|89255522|ref|YP_512883.1| - 4.2e-12 46.2 2.0 3.8e-11 43.0 2.0 1.9 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 gi|89255522|ref|YP_512883.1| - 6.9e-08 32.7 0.0 9.7e-08 32.2 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.6 gi|89255522|ref|YP_512883.1| - 0.00017 21.3 0.2 0.00023 20.9 0.2 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease DUF4096 PF13340.6 gi|89255522|ref|YP_512883.1| - 0.0056 16.9 0.0 0.011 15.9 0.0 1.5 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) DDE_3 PF13358.6 gi|89255523|ref|YP_512884.1| - 2e-29 102.2 0.1 7.3e-29 100.4 0.0 1.8 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.16 gi|89255523|ref|YP_512884.1| - 0.011 15.8 1.9 0.027 14.5 0.8 2.2 2 1 0 2 2 2 0 Transposase HTH_29 PF13551.6 gi|89255523|ref|YP_512884.1| - 0.043 13.9 0.0 0.11 12.6 0.0 1.6 2 0 0 2 2 2 0 Winged helix-turn helix HTH_40 PF14493.6 gi|89255523|ref|YP_512884.1| - 0.047 14.1 0.0 0.2 12.1 0.0 2.0 3 0 0 3 3 3 0 Helix-turn-helix domain rve PF00665.26 gi|89255523|ref|YP_512884.1| - 0.14 12.4 0.0 0.25 11.6 0.0 1.4 1 0 0 1 1 1 0 Integrase core domain Ni_hydr_CYTB PF01292.20 gi|89255524|ref|YP_512885.1| - 6.7e-24 84.5 12.6 8.6e-24 84.1 12.6 1.1 1 0 0 1 1 1 1 Prokaryotic cytochrome b561 Na_H_antiport_1 PF06965.12 gi|89255525|ref|YP_512886.1| - 8.5e-130 432.9 27.7 1e-129 432.7 27.7 1.0 1 0 0 1 1 1 1 Na+/H+ antiporter 1 Exo_endo_phos PF03372.23 gi|89255526|ref|YP_512887.1| - 2.1e-12 47.0 0.1 9.1e-12 45.0 0.1 2.0 1 1 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Exo_endo_phos_2 PF14529.6 gi|89255526|ref|YP_512887.1| - 0.0016 18.2 0.0 0.0053 16.6 0.0 1.9 1 1 0 1 1 1 1 Endonuclease-reverse transcriptase Acyltransferase PF01553.21 gi|89255527|ref|YP_512888.1| - 1.6e-19 69.9 0.0 2.3e-19 69.4 0.0 1.2 1 0 0 1 1 1 1 Acyltransferase Acyltransferase PF01553.21 gi|89255528|ref|YP_512889.1| - 3.7e-23 81.6 0.0 5.1e-23 81.2 0.0 1.2 1 0 0 1 1 1 1 Acyltransferase Tetraspanin PF00335.20 gi|89255528|ref|YP_512889.1| - 0.027 14.2 1.2 0.034 13.9 1.2 1.1 1 0 0 1 1 1 0 Tetraspanin family DUF3470 PF11953.8 gi|89255529|ref|YP_512890.1| - 1.1e-17 63.6 0.2 1.5e-17 63.2 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF3470) Fer4 PF00037.27 gi|89255529|ref|YP_512890.1| - 1.8e-09 37.0 25.2 1.6e-07 30.8 5.8 3.6 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_9 PF13187.6 gi|89255529|ref|YP_512890.1| - 4.7e-07 29.9 26.5 4.1e-05 23.7 13.2 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|89255529|ref|YP_512890.1| - 1.1e-06 29.2 30.6 1e-05 26.0 15.2 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|89255529|ref|YP_512890.1| - 4e-06 26.8 16.8 0.0015 18.6 5.8 2.6 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|89255529|ref|YP_512890.1| - 1.1e-05 25.2 24.5 0.0007 19.6 5.2 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|89255529|ref|YP_512890.1| - 1.6e-05 24.7 17.6 0.0023 17.9 2.9 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|89255529|ref|YP_512890.1| - 3.6e-05 24.6 14.3 0.0046 17.9 4.4 2.5 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|89255529|ref|YP_512890.1| - 0.00012 22.4 13.3 0.00027 21.3 1.3 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|89255529|ref|YP_512890.1| - 0.00076 19.6 22.3 0.066 13.4 7.7 2.6 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_11 PF13247.6 gi|89255529|ref|YP_512890.1| - 0.00094 19.3 7.4 0.0013 18.9 7.4 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|89255529|ref|YP_512890.1| - 0.032 14.8 17.9 0.19 12.3 6.0 2.6 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|89255529|ref|YP_512890.1| - 0.039 14.5 2.4 0.039 14.5 2.4 2.8 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|89255529|ref|YP_512890.1| - 0.078 14.0 24.5 0.57 11.3 7.5 3.1 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|89255529|ref|YP_512890.1| - 0.43 11.2 16.5 2.6 8.7 5.4 3.1 2 1 1 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|89255529|ref|YP_512890.1| - 5.1 7.3 14.9 18 5.6 2.9 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain DUF998 PF06197.13 gi|89255530|ref|YP_512891.1| - 0.0049 16.5 8.4 0.0071 16.0 8.4 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF998) Methyltransf_3 PF01596.17 gi|89255531|ref|YP_512892.1| - 1.6e-47 161.4 0.3 1.8e-47 161.3 0.3 1.0 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_24 PF13578.6 gi|89255531|ref|YP_512892.1| - 2e-12 48.0 0.0 2.5e-12 47.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|89255531|ref|YP_512892.1| - 0.0044 16.8 0.1 0.011 15.5 0.0 1.6 1 1 1 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 gi|89255531|ref|YP_512892.1| - 0.021 14.6 0.0 0.026 14.3 0.0 1.1 1 0 0 1 1 1 0 Methyltransferase domain AP4E_app_platf PF14807.6 gi|89255531|ref|YP_512892.1| - 0.12 12.7 0.0 0.53 10.7 0.0 1.8 2 0 0 2 2 2 0 Adaptin AP4 complex epsilon appendage platform ATP-grasp PF02222.22 gi|89255532|ref|YP_512893.1| - 6.5e-59 198.3 0.0 1.1e-58 197.5 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|89255532|ref|YP_512893.1| - 2.9e-08 33.5 0.0 1.6e-07 31.1 0.0 2.0 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus CPSase_L_D2 PF02786.17 gi|89255532|ref|YP_512893.1| - 1e-07 31.7 0.0 2e-07 30.7 0.0 1.4 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain RimK PF08443.11 gi|89255532|ref|YP_512893.1| - 1.6e-06 27.8 0.2 1.2e-05 25.0 0.0 2.5 3 1 1 4 4 4 1 RimK-like ATP-grasp domain ATP-grasp_3 PF02655.14 gi|89255532|ref|YP_512893.1| - 2.6e-06 27.6 0.0 4.8e-06 26.7 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.19 gi|89255532|ref|YP_512893.1| - 3.4e-05 23.7 0.0 6.7e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain 2-Hacid_dh_C PF02826.19 gi|89255532|ref|YP_512893.1| - 0.0071 15.7 0.0 0.012 15.0 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ATP-grasp_4 PF13535.6 gi|89255532|ref|YP_512893.1| - 0.013 15.1 0.0 0.037 13.6 0.0 1.8 1 1 0 1 1 1 0 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|89255532|ref|YP_512893.1| - 0.027 13.7 0.3 0.14 11.4 0.1 2.3 2 1 0 2 2 2 0 Sugar-transfer associated ATP-grasp Epimerase PF01370.21 gi|89255532|ref|YP_512893.1| - 0.053 13.0 0.0 0.099 12.1 0.0 1.4 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family AAA_2 PF07724.14 gi|89255534|ref|YP_512895.1| - 4e-59 199.6 0.1 4.9e-56 189.5 0.0 2.8 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) AAA_lid_9 PF17871.1 gi|89255534|ref|YP_512895.1| - 2.6e-35 120.5 4.6 2.6e-35 120.5 4.6 2.5 2 1 1 3 3 1 1 AAA lid domain ClpB_D2-small PF10431.9 gi|89255534|ref|YP_512895.1| - 2.9e-26 91.3 0.4 1.6e-25 88.9 0.4 2.4 1 0 0 1 1 1 1 C-terminal, D2-small domain, of ClpB protein AAA PF00004.29 gi|89255534|ref|YP_512895.1| - 7.1e-23 81.5 0.0 1.1e-12 48.5 0.0 2.9 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Clp_N PF02861.20 gi|89255534|ref|YP_512895.1| - 1.2e-19 70.2 0.0 3e-08 33.7 0.0 3.3 4 0 0 4 4 2 2 Clp amino terminal domain, pathogenicity island component AAA_5 PF07728.14 gi|89255534|ref|YP_512895.1| - 1e-18 67.6 0.3 7.2e-13 48.7 0.0 3.3 3 0 0 3 3 2 2 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|89255534|ref|YP_512895.1| - 3.5e-13 50.3 2.1 5.6e-05 23.6 0.0 4.3 3 2 1 5 5 3 2 AAA ATPase domain AAA_22 PF13401.6 gi|89255534|ref|YP_512895.1| - 2.3e-09 37.7 1.7 0.0053 17.0 0.0 4.2 3 2 0 3 3 3 2 AAA domain Sigma54_activat PF00158.26 gi|89255534|ref|YP_512895.1| - 6.6e-08 32.4 0.1 9.6e-05 22.1 0.0 2.9 2 1 0 2 2 2 2 Sigma-54 interaction domain IstB_IS21 PF01695.17 gi|89255534|ref|YP_512895.1| - 2.4e-07 30.6 0.0 0.029 14.1 0.0 2.8 2 0 0 2 2 2 2 IstB-like ATP binding protein TniB PF05621.11 gi|89255534|ref|YP_512895.1| - 1.1e-06 28.2 0.8 0.0022 17.5 0.0 4.1 3 1 0 3 3 3 1 Bacterial TniB protein ATPase_2 PF01637.18 gi|89255534|ref|YP_512895.1| - 2.1e-06 27.8 1.6 0.56 10.1 0.1 5.0 2 2 1 3 3 3 2 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|89255534|ref|YP_512895.1| - 1.1e-05 25.4 0.1 0.14 12.2 0.0 3.1 3 0 0 3 3 2 2 AAA domain AAA_7 PF12775.7 gi|89255534|ref|YP_512895.1| - 4e-05 23.2 0.0 0.19 11.2 0.0 2.6 2 0 0 2 2 2 2 P-loop containing dynein motor region AAA_24 PF13479.6 gi|89255534|ref|YP_512895.1| - 8.2e-05 22.4 0.1 0.23 11.2 0.0 3.6 3 1 0 3 3 3 1 AAA domain Roc PF08477.13 gi|89255534|ref|YP_512895.1| - 0.00014 22.0 0.0 1 9.6 0.0 2.8 2 0 0 2 2 2 2 Ras of Complex, Roc, domain of DAPkinase RuvB_N PF05496.12 gi|89255534|ref|YP_512895.1| - 0.00016 21.4 0.9 3.9 7.2 0.3 4.1 3 1 0 3 3 3 1 Holliday junction DNA helicase RuvB P-loop domain Mg_chelatase PF01078.21 gi|89255534|ref|YP_512895.1| - 0.00025 20.5 0.1 1.2 8.4 0.0 3.5 2 1 0 2 2 2 1 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.22 gi|89255534|ref|YP_512895.1| - 0.00026 21.3 0.0 1.9 8.9 0.0 3.3 3 0 0 3 3 2 2 RNA helicase TsaE PF02367.17 gi|89255534|ref|YP_512895.1| - 0.0007 19.6 0.0 1.8 8.6 0.0 2.8 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_18 PF13238.6 gi|89255534|ref|YP_512895.1| - 0.00077 20.0 6.5 0.38 11.3 0.0 3.9 4 1 0 4 4 3 2 AAA domain AAA_28 PF13521.6 gi|89255534|ref|YP_512895.1| - 0.00078 19.7 0.1 3.7 7.8 0.0 3.5 3 0 0 3 3 3 1 AAA domain DUF815 PF05673.13 gi|89255534|ref|YP_512895.1| - 0.00079 18.7 0.1 0.15 11.2 0.1 3.0 2 1 0 2 2 2 1 Protein of unknown function (DUF815) ABC_tran PF00005.27 gi|89255534|ref|YP_512895.1| - 0.00085 19.9 0.8 1.5 9.4 0.0 3.9 3 1 0 3 3 3 1 ABC transporter RsgA_GTPase PF03193.16 gi|89255534|ref|YP_512895.1| - 0.001 19.0 0.0 2.2 8.2 0.0 2.9 2 0 0 2 2 2 2 RsgA GTPase AAA_19 PF13245.6 gi|89255534|ref|YP_512895.1| - 0.0021 18.4 0.2 0.76 10.1 0.2 4.1 4 1 0 4 4 4 1 AAA domain ResIII PF04851.15 gi|89255534|ref|YP_512895.1| - 0.0025 17.8 0.0 3.3 7.7 0.0 3.9 2 1 0 3 3 3 1 Type III restriction enzyme, res subunit NACHT PF05729.12 gi|89255534|ref|YP_512895.1| - 0.0027 17.6 0.0 0.26 11.2 0.0 2.6 2 0 0 2 2 2 1 NACHT domain AAA_3 PF07726.11 gi|89255534|ref|YP_512895.1| - 0.0045 16.9 0.1 3.9 7.3 0.0 3.4 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.15 gi|89255534|ref|YP_512895.1| - 0.0096 15.8 0.0 1.8 8.4 0.0 3.3 2 0 0 2 2 2 1 NTPase AAA_33 PF13671.6 gi|89255534|ref|YP_512895.1| - 0.01 16.0 0.0 8 6.6 0.0 2.8 2 0 0 2 2 2 0 AAA domain ATP_bind_1 PF03029.17 gi|89255534|ref|YP_512895.1| - 0.018 14.8 0.6 6.6 6.4 0.0 3.7 4 0 0 4 4 3 0 Conserved hypothetical ATP binding protein PduV-EutP PF10662.9 gi|89255534|ref|YP_512895.1| - 0.028 14.2 0.0 1 9.1 0.0 3.0 3 0 0 3 3 2 0 Ethanolamine utilisation - propanediol utilisation DNA_pol3_delta2 PF13177.6 gi|89255534|ref|YP_512895.1| - 0.03 14.1 0.0 0.75 9.6 0.0 2.8 2 1 0 2 2 1 0 DNA polymerase III, delta subunit AAA_30 PF13604.6 gi|89255534|ref|YP_512895.1| - 0.03 14.0 0.2 5.7 6.6 0.1 3.3 2 2 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|89255534|ref|YP_512895.1| - 0.049 13.4 0.0 11 5.9 0.0 2.5 2 0 0 2 2 2 0 P-loop containing region of AAA domain SRP54 PF00448.22 gi|89255534|ref|YP_512895.1| - 0.053 13.1 0.0 3.9 7.1 0.0 2.8 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_23 PF13476.6 gi|89255534|ref|YP_512895.1| - 0.066 13.7 22.9 8.6 6.8 0.0 3.9 2 1 0 2 2 2 0 AAA domain Torsin PF06309.11 gi|89255534|ref|YP_512895.1| - 0.15 12.2 0.0 0.61 10.2 0.0 2.0 2 0 0 2 2 1 0 Torsin Atg14 PF10186.9 gi|89255534|ref|YP_512895.1| - 0.32 10.0 7.9 0.6 9.1 7.9 1.4 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 Spc7 PF08317.11 gi|89255534|ref|YP_512895.1| - 0.68 8.8 15.3 1.7 7.4 15.3 1.7 1 0 0 1 1 1 0 Spc7 kinetochore protein AAA_6 PF12774.7 gi|89255534|ref|YP_512895.1| - 0.75 8.7 2.9 2.2 7.2 0.0 3.0 3 1 1 4 4 4 0 Hydrolytic ATP binding site of dynein motor region Syntaxin-6_N PF09177.11 gi|89255534|ref|YP_512895.1| - 5.5 7.6 7.8 85 3.8 4.8 4.1 3 1 0 3 3 2 0 Syntaxin 6, N-terminal Trp_syntA PF00290.20 gi|89255536|ref|YP_512897.1| - 1.1e-92 309.5 0.2 1.3e-92 309.3 0.2 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain His_biosynth PF00977.21 gi|89255536|ref|YP_512897.1| - 4.4e-05 23.0 0.1 0.064 12.7 0.1 2.2 1 1 1 2 2 2 2 Histidine biosynthesis protein PcrB PF01884.17 gi|89255536|ref|YP_512897.1| - 0.026 14.0 0.1 2.1 7.7 0.0 2.4 2 0 0 2 2 2 0 PcrB family GatB_Yqey PF02637.18 gi|89255536|ref|YP_512897.1| - 0.069 13.0 0.0 0.14 12.0 0.0 1.5 1 0 0 1 1 1 0 GatB domain PALP PF00291.25 gi|89255537|ref|YP_512898.1| - 2.1e-47 162.0 0.4 2.5e-47 161.7 0.4 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme NitrOD5 PF11537.8 gi|89255537|ref|YP_512898.1| - 0.0048 17.0 0.0 6.1 7.0 0.1 3.2 3 1 1 4 4 4 2 Nitrosopumilus output domain 5 Peptidase_M32 PF02074.15 gi|89255538|ref|YP_512899.1| - 1.5e-173 578.0 8.3 1.8e-173 577.8 8.3 1.0 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase SF3A3 PF16837.5 gi|89255538|ref|YP_512899.1| - 1.8 9.1 8.4 0.37 11.3 1.4 3.2 3 0 0 3 3 3 0 Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 Csm2_III-A PF03750.13 gi|89255538|ref|YP_512899.1| - 2.8 8.8 8.0 0.97 10.3 2.3 2.9 3 1 1 4 4 4 0 Csm2 Type III-A Voltage_CLC PF00654.20 gi|89255539|ref|YP_512900.1| - 1.3e-82 278.0 35.1 1.4e-82 277.8 35.1 1.0 1 0 0 1 1 1 1 Voltage gated chloride channel Antimicrobial10 PF08105.11 gi|89255539|ref|YP_512900.1| - 0.00069 19.6 0.2 0.75 9.9 0.0 2.8 2 0 0 2 2 2 2 Metchnikowin family DUF3487 PF11990.8 gi|89255539|ref|YP_512900.1| - 0.038 13.9 0.1 0.038 13.9 0.1 3.8 1 1 4 5 5 5 0 Protein of unknown function (DUF3487) K1 PF02960.14 gi|89255540|ref|YP_512901.1| - 0.032 14.4 0.3 0.053 13.6 0.3 1.4 1 0 0 1 1 1 0 K1 glycoprotein FtsX PF02687.21 gi|89255540|ref|YP_512901.1| - 0.09 13.3 9.1 0.11 13.0 9.1 1.2 1 0 0 1 1 1 0 FtsX-like permease family TMEM43 PF07787.12 gi|89255540|ref|YP_512901.1| - 0.99 8.7 5.9 1.1 8.5 5.9 1.1 1 0 0 1 1 1 0 Transmembrane protein 43 DUF2207 PF09972.9 gi|89255540|ref|YP_512901.1| - 1.2 7.8 5.7 1.3 7.7 5.7 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Herpes_LMP1 PF05297.11 gi|89255540|ref|YP_512901.1| - 2.9 7.0 5.1 3.4 6.8 5.1 1.1 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) DUF3568 PF12092.8 gi|89255541|ref|YP_512902.1| - 5.3e-24 84.7 4.0 5.8e-24 84.5 4.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3568) DUF3568 PF12092.8 gi|89255542|ref|YP_512903.1| - 1.2e-38 132.0 6.5 1.4e-38 131.8 6.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3568) DUF3568 PF12092.8 gi|89255543|ref|YP_512904.1| - 3.2e-39 133.8 4.6 3.6e-39 133.7 4.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3568) DDE_3 PF13358.6 gi|89255544|ref|YP_512905.1| - 9.9e-30 103.2 0.2 3.2e-29 101.6 0.0 1.8 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.16 gi|89255544|ref|YP_512905.1| - 0.0029 17.6 1.5 0.0084 16.2 0.6 2.3 2 1 0 2 2 2 1 Transposase HTH_29 PF13551.6 gi|89255544|ref|YP_512905.1| - 0.0033 17.4 0.0 0.008 16.2 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn helix HTH_40 PF14493.6 gi|89255544|ref|YP_512905.1| - 0.011 16.2 0.1 0.069 13.6 0.0 2.3 3 1 0 3 3 3 0 Helix-turn-helix domain HTH_28 PF13518.6 gi|89255544|ref|YP_512905.1| - 0.026 14.6 0.0 0.073 13.2 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain CENP-B_N PF04218.13 gi|89255544|ref|YP_512905.1| - 0.097 12.3 0.0 0.98 9.1 0.0 2.5 3 0 0 3 3 3 0 CENP-B N-terminal DNA-binding domain HTH_23 PF13384.6 gi|89255544|ref|YP_512905.1| - 0.12 12.2 0.0 0.34 10.8 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain rve PF00665.26 gi|89255544|ref|YP_512905.1| - 0.15 12.3 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 Integrase core domain DDE_Tnp_ISAZ013 PF07592.11 gi|89255544|ref|YP_512905.1| - 0.17 10.9 0.3 1.1 8.1 0.1 2.0 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain MFS_1 PF07690.16 gi|89255545|ref|YP_512906.1| - 1.9e-20 73.1 34.5 2.3e-20 72.8 34.5 1.0 1 0 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|89255545|ref|YP_512906.1| - 0.0053 15.7 26.8 0.11 11.3 4.4 2.3 1 1 0 2 2 2 2 Sugar (and other) transporter LacY_symp PF01306.19 gi|89255545|ref|YP_512906.1| - 4.4 6.0 34.2 2.1 7.0 13.2 3.2 1 1 0 2 2 2 0 LacY proton/sugar symporter PliI PF16743.5 gi|89255546|ref|YP_512907.1| - 0.031 14.0 0.0 0.045 13.5 0.0 1.2 1 0 0 1 1 1 0 Periplasmic lysozyme inhibitor of I-type lysozyme PDZ_4 PF17816.1 gi|89255546|ref|YP_512907.1| - 0.07 13.5 0.1 0.13 12.7 0.1 1.5 1 1 0 1 1 1 0 PDZ domain T6SS_VipA PF05591.12 gi|89255548|ref|YP_512909.1| - 1.2e-39 135.6 3.8 1.4e-39 135.4 3.8 1.0 1 0 0 1 1 1 1 Type VI secretion system, VipA, VC_A0107 or Hcp2 VipB PF05943.12 gi|89255549|ref|YP_512910.1| - 7.4e-140 466.5 0.0 8.7e-140 466.2 0.0 1.0 1 0 0 1 1 1 1 Type VI secretion protein, EvpB/VC_A0108, tail sheath IglC PF11550.8 gi|89255550|ref|YP_512911.1| - 5.7e-144 476.8 7.4 6.3e-144 476.7 7.4 1.0 1 0 0 1 1 1 1 Intracellular growth locus C protein T6SS_VasE PF05936.12 gi|89255551|ref|YP_512912.1| - 0.0034 16.1 0.1 0.06 12.0 0.1 2.1 2 0 0 2 2 2 2 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE T6PP_N PF18572.1 gi|89255553|ref|YP_512914.1| - 9.2 6.2 9.5 1.6 8.6 0.2 3.4 3 0 0 3 3 3 0 Trehalose-6-phosphate phosphatase N-terminal helical bundle domain MAP PF03642.13 gi|89255555|ref|YP_512916.1| - 6.6 7.1 16.0 2.7 8.4 0.3 3.8 3 1 1 4 4 4 0 MAP domain DotU PF09850.9 gi|89255556|ref|YP_512917.1| - 1.7e-09 37.7 0.0 2e-09 37.5 0.0 1.1 1 0 0 1 1 1 1 Type VI secretion system protein DotU Condensin2nSMC PF12422.8 gi|89255556|ref|YP_512917.1| - 0.016 15.4 0.1 0.85 9.8 0.0 2.2 2 0 0 2 2 2 0 Condensin II non structural maintenance of chromosomes subunit DUF4280 PF14107.6 gi|89255558|ref|YP_512919.1| - 9.4e-16 58.6 0.0 1.8e-15 57.7 0.0 1.4 2 0 0 2 2 2 1 Domain of unknown function (DUF4280) DUF2345 PF10106.9 gi|89255560|ref|YP_512921.1| - 0.0022 17.8 12.8 0.13 12.1 1.6 3.1 1 1 2 3 3 3 3 Uncharacterized protein conserved in bacteria (DUF2345) Sarcoglycan_1 PF04790.13 gi|89255560|ref|YP_512921.1| - 0.055 12.8 8.1 0.34 10.2 8.1 1.8 1 1 0 1 1 1 0 Sarcoglycan complex subunit protein ITI_HC_C PF06668.12 gi|89255560|ref|YP_512921.1| - 0.068 12.8 2.5 0.16 11.6 2.5 1.6 1 1 0 1 1 1 0 Inter-alpha-trypsin inhibitor heavy chain C-terminus STT3_PglB_C PF18527.1 gi|89255560|ref|YP_512921.1| - 0.88 9.7 5.7 0.85 9.8 4.0 1.9 1 1 0 1 1 1 0 STT3/PglB C-terminal beta-barrel domain Big_5 PF13205.6 gi|89255560|ref|YP_512921.1| - 2.8 8.7 6.2 1 10.1 1.9 2.0 1 1 1 2 2 2 0 Bacterial Ig-like domain IcmF_C PF06744.12 gi|89255562|ref|YP_512923.1| - 6.3e-10 39.0 0.0 1.1e-09 38.3 0.0 1.3 1 0 0 1 1 1 1 Type VI secretion protein IcmF C-terminal Clr2_transil PF16761.5 gi|89255562|ref|YP_512923.1| - 0.095 13.5 0.2 1.6 9.6 0.0 2.8 2 0 0 2 2 2 0 Transcription-silencing protein, cryptic loci regulator Clr2 2-Hacid_dh PF00389.30 gi|89255564|ref|YP_512925.1| - 2.5e-16 59.6 0.0 3.2e-16 59.2 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 2-Hacid_dh_C PF02826.19 gi|89255564|ref|YP_512925.1| - 1.4e-10 40.9 0.0 2.1e-10 40.3 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Glyco_transf_4 PF13439.6 gi|89255564|ref|YP_512925.1| - 0.1 12.6 0.0 0.19 11.7 0.0 1.5 1 1 0 1 1 1 0 Glycosyltransferase Family 4 DDE_3 PF13358.6 gi|89255565|ref|YP_512926.1| - 9.9e-30 103.2 0.2 3.2e-29 101.6 0.0 1.8 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.16 gi|89255565|ref|YP_512926.1| - 0.0029 17.6 1.5 0.0084 16.2 0.6 2.3 2 1 0 2 2 2 1 Transposase HTH_29 PF13551.6 gi|89255565|ref|YP_512926.1| - 0.0033 17.4 0.0 0.008 16.2 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn helix HTH_40 PF14493.6 gi|89255565|ref|YP_512926.1| - 0.011 16.2 0.1 0.069 13.6 0.0 2.3 3 1 0 3 3 3 0 Helix-turn-helix domain HTH_28 PF13518.6 gi|89255565|ref|YP_512926.1| - 0.026 14.6 0.0 0.073 13.2 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain CENP-B_N PF04218.13 gi|89255565|ref|YP_512926.1| - 0.097 12.3 0.0 0.98 9.1 0.0 2.5 3 0 0 3 3 3 0 CENP-B N-terminal DNA-binding domain HTH_23 PF13384.6 gi|89255565|ref|YP_512926.1| - 0.12 12.2 0.0 0.34 10.8 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain rve PF00665.26 gi|89255565|ref|YP_512926.1| - 0.15 12.3 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 Integrase core domain DDE_Tnp_ISAZ013 PF07592.11 gi|89255565|ref|YP_512926.1| - 0.17 10.9 0.3 1.1 8.1 0.1 2.0 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain HMGL-like PF00682.19 gi|89255566|ref|YP_512927.1| - 9.9e-32 110.5 0.0 1.3e-31 110.1 0.0 1.1 1 0 0 1 1 1 1 HMGL-like HMGL-like PF00682.19 gi|89255567|ref|YP_512928.1| - 1.3e-16 61.0 0.0 1.4e-16 60.9 0.0 1.0 1 0 0 1 1 1 1 HMGL-like Aminotran_4 PF01063.19 gi|89255568|ref|YP_512929.1| - 1.1e-42 146.4 0.0 1.5e-42 146.0 0.0 1.1 1 0 0 1 1 1 1 Amino-transferase class IV PEP-utilizers_C PF02896.18 gi|89255569|ref|YP_512930.1| - 1.9e-82 276.7 0.0 2.7e-82 276.2 0.0 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PPDK_N PF01326.19 gi|89255569|ref|YP_512930.1| - 5e-62 210.1 0.0 1.8e-46 159.0 0.0 3.3 1 1 1 2 2 2 2 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers PF00391.23 gi|89255569|ref|YP_512930.1| - 2e-26 91.5 0.1 4.8e-26 90.3 0.1 1.7 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain RNA_pol_Rpb1_4 PF05000.17 gi|89255569|ref|YP_512930.1| - 0.051 13.5 0.2 0.21 11.5 0.0 2.1 2 0 0 2 2 2 0 RNA polymerase Rpb1, domain 4 DUF2863 PF11062.8 gi|89255569|ref|YP_512930.1| - 0.13 10.6 0.0 0.27 9.6 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2863) Ssu72 PF04722.13 gi|89255569|ref|YP_512930.1| - 0.25 10.9 1.5 2.1 7.8 0.5 2.8 2 1 1 3 3 3 0 Ssu72-like protein FeoB_N PF02421.18 gi|89255570|ref|YP_512931.1| - 2.3e-63 212.4 1.3 4.7e-63 211.4 1.3 1.6 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.14 gi|89255570|ref|YP_512931.1| - 4.8e-46 155.6 18.8 9.8e-33 112.8 0.3 3.5 3 0 0 3 3 3 2 Nucleoside recognition MMR_HSR1 PF01926.23 gi|89255570|ref|YP_512931.1| - 5.5e-19 68.3 0.2 1.3e-18 67.1 0.2 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_C PF07664.12 gi|89255570|ref|YP_512931.1| - 2.4e-17 62.4 0.3 2.4e-17 62.4 0.3 2.9 3 0 0 3 3 2 1 Ferrous iron transport protein B C terminus SRPRB PF09439.10 gi|89255570|ref|YP_512931.1| - 9.7e-06 25.1 0.1 2e-05 24.1 0.1 1.5 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit AIG1 PF04548.16 gi|89255570|ref|YP_512931.1| - 1.1e-05 24.8 0.1 2.1e-05 23.9 0.1 1.3 1 0 0 1 1 1 1 AIG1 family PduV-EutP PF10662.9 gi|89255570|ref|YP_512931.1| - 0.0012 18.5 0.2 0.0031 17.2 0.2 1.7 1 0 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation RsgA_GTPase PF03193.16 gi|89255570|ref|YP_512931.1| - 0.0021 18.0 0.6 0.58 10.0 0.1 2.5 2 0 0 2 2 2 2 RsgA GTPase Dynamin_N PF00350.23 gi|89255570|ref|YP_512931.1| - 0.0051 16.9 0.3 0.96 9.5 0.1 2.4 2 0 0 2 2 2 1 Dynamin family AAA_15 PF13175.6 gi|89255570|ref|YP_512931.1| - 0.015 15.0 0.9 0.022 14.5 0.9 1.3 1 0 0 1 1 1 0 AAA ATPase domain ABC_tran PF00005.27 gi|89255570|ref|YP_512931.1| - 0.043 14.3 0.0 0.086 13.4 0.0 1.5 1 0 0 1 1 1 0 ABC transporter GTP_EFTU PF00009.27 gi|89255570|ref|YP_512931.1| - 0.075 12.6 0.9 2 7.9 0.9 2.9 1 1 0 1 1 1 0 Elongation factor Tu GTP binding domain HisKA_2 PF07568.12 gi|89255570|ref|YP_512931.1| - 0.13 12.3 0.2 25 5.1 0.1 2.5 2 0 0 2 2 2 0 Histidine kinase Dimer_Tnp_hAT PF05699.14 gi|89255571|ref|YP_512932.1| - 0.11 12.3 0.0 0.17 11.7 0.0 1.3 1 0 0 1 1 1 0 hAT family C-terminal dimerisation region DDE_3 PF13358.6 gi|89255572|ref|YP_512933.1| - 2.3e-30 105.3 0.1 7.9e-30 103.5 0.0 1.8 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.16 gi|89255572|ref|YP_512933.1| - 0.0029 17.6 1.5 0.0084 16.2 0.6 2.3 2 1 0 2 2 2 1 Transposase HTH_29 PF13551.6 gi|89255572|ref|YP_512933.1| - 0.0033 17.4 0.0 0.008 16.2 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn helix HTH_40 PF14493.6 gi|89255572|ref|YP_512933.1| - 0.0099 16.3 0.1 0.069 13.6 0.0 2.3 3 1 0 3 3 3 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|89255572|ref|YP_512933.1| - 0.026 14.6 0.0 0.073 13.2 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|89255572|ref|YP_512933.1| - 0.12 12.2 0.0 0.34 10.8 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain rve PF00665.26 gi|89255572|ref|YP_512933.1| - 0.15 12.3 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 Integrase core domain DDE_Tnp_ISAZ013 PF07592.11 gi|89255572|ref|YP_512933.1| - 0.17 10.9 0.3 1.1 8.1 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain Glyco_transf_90 PF05686.12 gi|89255574|ref|YP_512935.1| - 7.9e-21 74.4 1.9 1.1e-20 73.9 1.9 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 90 Glyco_trans_1_2 PF13524.6 gi|89255574|ref|YP_512935.1| - 0.00092 19.6 0.1 0.0042 17.4 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 RNB PF00773.19 gi|89255575|ref|YP_512936.1| - 3.6e-54 184.3 4.0 6.4e-53 180.2 0.3 3.2 2 1 0 2 2 2 1 RNB domain Abhydrolase_2 PF02230.16 gi|89255576|ref|YP_512937.1| - 3.2e-58 197.1 0.3 3.6e-58 196.9 0.3 1.0 1 0 0 1 1 1 1 Phospholipase/Carboxylesterase Hydrolase_4 PF12146.8 gi|89255576|ref|YP_512937.1| - 1.8e-07 30.7 0.6 0.0047 16.2 0.0 2.3 2 1 1 3 3 3 2 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 gi|89255576|ref|YP_512937.1| - 3.9e-06 26.7 0.4 0.0098 15.6 0.2 2.4 1 1 1 2 2 2 2 alpha/beta hydrolase fold FSH1 PF03959.13 gi|89255576|ref|YP_512937.1| - 1e-05 25.3 0.0 3.5e-05 23.5 0.0 1.9 1 1 0 1 1 1 1 Serine hydrolase (FSH1) Abhydrolase_3 PF07859.13 gi|89255576|ref|YP_512937.1| - 0.0002 21.3 0.2 0.004 17.0 0.0 2.0 1 1 1 2 2 2 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.7 gi|89255576|ref|YP_512937.1| - 0.00025 20.8 0.1 0.00036 20.4 0.1 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family DLH PF01738.18 gi|89255576|ref|YP_512937.1| - 0.0005 19.7 0.0 0.0007 19.2 0.0 1.2 1 0 0 1 1 1 1 Dienelactone hydrolase family Esterase PF00756.20 gi|89255576|ref|YP_512937.1| - 0.0019 17.9 0.0 0.0028 17.3 0.0 1.4 1 1 0 1 1 1 1 Putative esterase DUF2974 PF11187.8 gi|89255576|ref|YP_512937.1| - 0.0055 16.3 0.0 0.0092 15.6 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF2974) Peptidase_S9 PF00326.21 gi|89255576|ref|YP_512937.1| - 0.0081 15.7 0.3 0.32 10.4 0.0 2.3 1 1 0 2 2 2 1 Prolyl oligopeptidase family DUF676 PF05057.14 gi|89255576|ref|YP_512937.1| - 0.02 14.4 0.1 0.032 13.7 0.1 1.3 1 0 0 1 1 1 0 Putative serine esterase (DUF676) Palm_thioest PF02089.15 gi|89255576|ref|YP_512937.1| - 0.058 13.2 0.1 0.095 12.5 0.0 1.6 2 0 0 2 2 2 0 Palmitoyl protein thioesterase Abhydrolase_6 PF12697.7 gi|89255576|ref|YP_512937.1| - 0.062 13.9 0.0 0.24 12.0 0.0 1.7 1 1 1 2 2 2 0 Alpha/beta hydrolase family PE-PPE PF08237.11 gi|89255576|ref|YP_512937.1| - 0.081 12.5 0.1 0.12 12.0 0.1 1.3 1 0 0 1 1 1 0 PE-PPE domain PUCC PF03209.15 gi|89255576|ref|YP_512937.1| - 0.086 11.8 0.0 0.11 11.5 0.0 1.1 1 0 0 1 1 1 0 PUCC protein Porphobil_deam PF01379.20 gi|89255577|ref|YP_512938.1| - 7.3e-80 267.3 0.0 9.8e-80 266.9 0.0 1.2 1 0 0 1 1 1 1 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.15 gi|89255577|ref|YP_512938.1| - 1.2e-18 67.2 0.1 2.5e-18 66.2 0.1 1.5 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain CRCB PF02537.15 gi|89255578|ref|YP_512939.1| - 5.4e-21 74.7 6.4 6.1e-21 74.5 6.4 1.0 1 0 0 1 1 1 1 CrcB-like protein, Camphor Resistance (CrcB) Gpi1 PF05024.15 gi|89255578|ref|YP_512939.1| - 0.005 16.9 1.8 0.0057 16.7 1.8 1.1 1 0 0 1 1 1 1 N-acetylglucosaminyl transferase component (Gpi1) Ost5 PF05251.12 gi|89255578|ref|YP_512939.1| - 3.7 7.9 8.9 0.39 11.0 2.9 2.1 2 0 0 2 2 2 0 Oligosaccharyltransferase subunit 5 UN_NPL4 PF11543.8 gi|89255579|ref|YP_512940.1| - 0.041 14.4 0.0 0.068 13.7 0.0 1.6 1 1 0 1 1 1 0 Nuclear pore localisation protein NPL4 Gly-zipper_YMGG PF13441.6 gi|89255580|ref|YP_512941.1| - 0.081 12.7 20.8 0.091 12.5 9.6 2.3 2 0 0 2 2 2 0 YMGG-like Gly-zipper Romo1 PF10247.9 gi|89255580|ref|YP_512941.1| - 6 7.3 19.2 0.69 10.3 3.3 2.3 2 0 0 2 2 2 0 Reactive mitochondrial oxygen species modulator 1 zf-CHCC PF10276.9 gi|89255581|ref|YP_512942.1| - 2.9e-12 46.4 0.5 3.7e-12 46.1 0.5 1.2 1 0 0 1 1 1 1 Zinc-finger domain zinc_ribbon_5 PF13719.6 gi|89255581|ref|YP_512942.1| - 0.0048 16.6 0.2 0.0048 16.6 0.2 2.2 2 1 0 2 2 2 1 zinc-ribbon domain Herpes_UL52 PF03121.15 gi|89255581|ref|YP_512942.1| - 0.026 14.5 0.1 0.037 14.0 0.1 1.4 1 1 0 1 1 1 0 Herpesviridae UL52/UL70 DNA primase zf-ribbon_3 PF13248.6 gi|89255581|ref|YP_512942.1| - 0.04 13.3 1.5 0.062 12.7 0.2 1.9 2 0 0 2 2 2 0 zinc-ribbon domain Rad50_zn_hook PF04423.14 gi|89255581|ref|YP_512942.1| - 0.063 13.1 0.1 0.12 12.3 0.1 1.5 1 0 0 1 1 1 0 Rad50 zinc hook motif UPF0547 PF10571.9 gi|89255581|ref|YP_512942.1| - 0.071 13.2 0.1 0.071 13.2 0.1 1.6 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 BPD_transp_1 PF00528.22 gi|89255582|ref|YP_512943.1| - 8.1e-24 84.4 32.9 2.5e-14 53.5 17.4 4.2 2 2 1 4 4 4 2 Binding-protein-dependent transport system inner membrane component TRIQK PF15168.6 gi|89255582|ref|YP_512943.1| - 3.9 7.4 7.4 0.66 9.9 1.3 3.1 3 1 0 3 3 3 0 Triple QxxK/R motif-containing protein family AAA_assoc_C PF09821.9 gi|89255583|ref|YP_512944.1| - 6.1e-41 139.7 0.0 1.2e-40 138.7 0.0 1.5 1 0 0 1 1 1 1 C-terminal AAA-associated domain ABC_tran PF00005.27 gi|89255583|ref|YP_512944.1| - 3.3e-33 115.1 0.0 5.8e-33 114.3 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|89255583|ref|YP_512944.1| - 4.1e-06 26.8 3.7 0.0028 17.5 0.4 2.9 2 2 1 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|89255583|ref|YP_512944.1| - 0.0002 21.1 0.1 0.00039 20.1 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|89255583|ref|YP_512944.1| - 0.0013 18.6 0.6 0.0023 17.9 0.2 1.6 2 0 0 2 2 2 1 RsgA GTPase AAA_23 PF13476.6 gi|89255583|ref|YP_512944.1| - 0.0018 18.8 0.0 0.0037 17.8 0.0 1.5 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|89255583|ref|YP_512944.1| - 0.012 16.0 0.0 0.029 14.8 0.0 1.7 1 0 0 1 1 1 0 AAA ATPase domain NACHT PF05729.12 gi|89255583|ref|YP_512944.1| - 0.017 15.0 0.1 0.032 14.1 0.1 1.4 1 0 0 1 1 1 0 NACHT domain MMR_HSR1 PF01926.23 gi|89255583|ref|YP_512944.1| - 0.032 14.3 0.8 0.15 12.1 0.3 2.5 2 1 0 2 2 2 0 50S ribosome-binding GTPase DUF87 PF01935.17 gi|89255583|ref|YP_512944.1| - 0.039 14.1 1.4 0.38 10.8 0.4 2.2 2 0 0 2 2 2 0 Helicase HerA, central domain AAA_18 PF13238.6 gi|89255583|ref|YP_512944.1| - 0.049 14.2 0.0 0.27 11.8 0.0 2.3 2 1 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|89255583|ref|YP_512944.1| - 0.087 13.1 0.1 0.33 11.2 0.0 2.1 2 1 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|89255583|ref|YP_512944.1| - 0.11 12.2 0.1 0.31 10.7 0.0 1.8 2 0 0 2 2 2 0 AAA domain G-alpha PF00503.20 gi|89255583|ref|YP_512944.1| - 0.2 10.8 0.0 0.3 10.2 0.0 1.4 1 1 0 1 1 1 0 G-protein alpha subunit DUF3573 PF12097.8 gi|89255584|ref|YP_512945.1| - 2.6e-113 378.7 26.1 2.6e-113 378.7 26.1 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF3573) DUF3561 PF12084.8 gi|89255584|ref|YP_512945.1| - 0.022 14.8 0.1 0.067 13.2 0.1 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF3561) Na_H_Exchanger PF00999.21 gi|89255585|ref|YP_512946.1| - 2.3e-35 122.1 55.1 2.9e-35 121.8 55.1 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.18 gi|89255585|ref|YP_512946.1| - 0.00014 22.1 0.0 0.00027 21.2 0.0 1.5 1 0 0 1 1 1 1 TrkA-N domain Hexapep PF00132.24 gi|89255586|ref|YP_512947.1| - 1.2e-13 50.2 5.2 6.2e-06 25.7 0.2 4.2 3 1 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) LolB PF03550.14 gi|89255587|ref|YP_512948.1| - 2e-42 144.8 0.6 2.7e-42 144.4 0.6 1.2 1 0 0 1 1 1 1 Outer membrane lipoprotein LolB DUF4292 PF14125.6 gi|89255587|ref|YP_512948.1| - 0.027 14.2 0.1 0.075 12.7 0.1 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4292) GHMP_kinases_N PF00288.26 gi|89255588|ref|YP_512949.1| - 5e-11 42.7 0.0 9.8e-11 41.7 0.0 1.5 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|89255588|ref|YP_512949.1| - 0.00018 21.8 0.0 0.00035 20.9 0.0 1.4 1 0 0 1 1 1 1 GHMP kinases C terminal DUF512 PF04459.12 gi|89255589|ref|YP_512950.1| - 0.15 11.3 0.0 0.16 11.2 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF512) DDE_3 PF13358.6 gi|89255590|ref|YP_512951.1| - 2.3e-30 105.3 0.1 7.9e-30 103.5 0.0 1.8 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.16 gi|89255590|ref|YP_512951.1| - 0.0029 17.6 1.5 0.0084 16.2 0.6 2.3 2 1 0 2 2 2 1 Transposase HTH_29 PF13551.6 gi|89255590|ref|YP_512951.1| - 0.0033 17.4 0.0 0.008 16.2 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn helix HTH_40 PF14493.6 gi|89255590|ref|YP_512951.1| - 0.0099 16.3 0.1 0.069 13.6 0.0 2.3 3 1 0 3 3 3 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|89255590|ref|YP_512951.1| - 0.026 14.6 0.0 0.073 13.2 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|89255590|ref|YP_512951.1| - 0.12 12.2 0.0 0.34 10.8 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain rve PF00665.26 gi|89255590|ref|YP_512951.1| - 0.15 12.3 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 Integrase core domain DDE_Tnp_ISAZ013 PF07592.11 gi|89255590|ref|YP_512951.1| - 0.17 10.9 0.3 1.1 8.1 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain PHO4 PF01384.20 gi|89255591|ref|YP_512952.1| - 8.7e-86 288.0 34.6 3e-85 286.2 34.6 1.7 1 1 0 1 1 1 1 Phosphate transporter family CpxA_peri PF16527.5 gi|89255592|ref|YP_512953.1| - 0.03 14.7 0.4 0.082 13.3 0.1 1.8 1 1 1 2 2 2 0 Two-component sensor protein CpxA, periplasmic domain HTH_11 PF08279.12 gi|89255592|ref|YP_512953.1| - 0.057 13.4 1.8 0.14 12.1 0.3 2.3 2 0 0 2 2 2 0 HTH domain HTH_Mga PF08280.11 gi|89255592|ref|YP_512953.1| - 0.059 13.4 0.3 0.17 12.0 0.3 1.8 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain Phosphoesterase PF04185.14 gi|89255593|ref|YP_512954.1| - 1.6e-103 346.7 9.8 1.9e-103 346.4 9.8 1.0 1 0 0 1 1 1 1 Phosphoesterase family CT_A_B PF02626.15 gi|89255594|ref|YP_512955.1| - 3.7e-42 144.8 0.0 1.4e-28 100.3 0.0 2.0 1 1 1 2 2 2 2 Carboxyltransferase domain, subdomain A and B LamB_YcsF PF03746.16 gi|89255595|ref|YP_512956.1| - 1.5e-44 152.4 0.0 1.9e-44 152.2 0.0 1.1 1 0 0 1 1 1 1 LamB/YcsF family Methyltransf_PK PF05891.12 gi|89255595|ref|YP_512956.1| - 0.00038 20.0 0.0 0.00092 18.8 0.0 1.6 2 1 0 2 2 2 1 AdoMet dependent proline di-methyltransferase MFS_1 PF07690.16 gi|89255596|ref|YP_512957.1| - 1.3e-08 34.2 16.4 1.3e-08 34.2 16.4 1.7 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.6 gi|89255596|ref|YP_512957.1| - 0.089 11.3 24.8 0.0034 16.0 17.6 1.9 1 1 0 2 2 2 0 MFS/sugar transport protein YbjM PF11045.8 gi|89255596|ref|YP_512957.1| - 1.5 9.0 9.6 4.3 7.5 5.4 2.6 1 1 1 2 2 2 0 Putative inner membrane protein of Enterobacteriaceae DDE_3 PF13358.6 gi|89255598|ref|YP_512959.1| - 2.3e-30 105.3 0.1 7.9e-30 103.5 0.0 1.8 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.16 gi|89255598|ref|YP_512959.1| - 0.0029 17.6 1.5 0.0084 16.2 0.6 2.3 2 1 0 2 2 2 1 Transposase HTH_29 PF13551.6 gi|89255598|ref|YP_512959.1| - 0.0033 17.4 0.0 0.008 16.2 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn helix HTH_40 PF14493.6 gi|89255598|ref|YP_512959.1| - 0.0099 16.3 0.1 0.069 13.6 0.0 2.3 3 1 0 3 3 3 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|89255598|ref|YP_512959.1| - 0.026 14.6 0.0 0.073 13.2 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|89255598|ref|YP_512959.1| - 0.12 12.2 0.0 0.34 10.8 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain rve PF00665.26 gi|89255598|ref|YP_512959.1| - 0.15 12.3 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 Integrase core domain DDE_Tnp_ISAZ013 PF07592.11 gi|89255598|ref|YP_512959.1| - 0.17 10.9 0.3 1.1 8.1 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain Usp PF00582.26 gi|89255600|ref|YP_512961.1| - 1.2e-48 165.2 5.9 7.9e-27 94.5 2.3 2.6 2 1 0 2 2 2 2 Universal stress protein family DeoRC PF00455.22 gi|89255600|ref|YP_512961.1| - 0.0052 16.7 0.5 0.45 10.4 0.1 2.8 2 1 0 2 2 2 1 DeoR C terminal sensor domain DUF3834 PF12916.7 gi|89255600|ref|YP_512961.1| - 0.018 14.3 3.9 0.03 13.6 3.9 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3834) DUF3579 PF12112.8 gi|89255600|ref|YP_512961.1| - 0.055 14.0 0.8 1.8 9.2 0.0 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF3579) DUF3427 PF11907.8 gi|89255601|ref|YP_512962.1| - 1.7e-42 145.7 12.0 1.7e-42 145.7 12.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF3427) ResIII PF04851.15 gi|89255601|ref|YP_512962.1| - 9.3e-31 107.1 1.3 9.3e-31 107.1 1.3 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|89255601|ref|YP_512962.1| - 8.3e-15 55.1 0.2 8.3e-15 55.1 0.2 3.9 4 0 0 4 4 4 1 Helicase conserved C-terminal domain PLDc_2 PF13091.6 gi|89255601|ref|YP_512962.1| - 9e-12 45.0 0.9 3.4e-11 43.2 0.2 2.3 2 0 0 2 2 2 1 PLD-like domain SWI2_SNF2 PF18766.1 gi|89255601|ref|YP_512962.1| - 1.1e-09 38.3 0.2 3.4e-09 36.7 0.2 1.9 1 0 0 1 1 1 1 SWI2/SNF2 ATPase DEAD PF00270.29 gi|89255601|ref|YP_512962.1| - 1.8e-06 27.9 0.4 1.2e-05 25.1 0.1 2.5 2 0 0 2 2 2 1 DEAD/DEAH box helicase TniB PF05621.11 gi|89255601|ref|YP_512962.1| - 0.03 13.7 0.0 0.78 9.1 0.0 2.5 2 0 0 2 2 2 0 Bacterial TniB protein Exonuc_VII_S PF02609.16 gi|89255601|ref|YP_512962.1| - 0.058 13.5 0.6 20 5.4 0.0 3.5 3 0 0 3 3 3 0 Exonuclease VII small subunit Helicase_C_2 PF13307.6 gi|89255601|ref|YP_512962.1| - 0.061 13.5 1.4 15 5.7 0.1 3.2 2 1 1 3 3 3 0 Helicase C-terminal domain RNA_pol_Rpb1_3 PF04983.18 gi|89255601|ref|YP_512962.1| - 2.9 7.8 9.5 1.2 9.0 0.3 3.5 3 1 0 3 3 3 0 RNA polymerase Rpb1, domain 3 RCC1_2 PF13540.6 gi|89255602|ref|YP_512963.1| - 2.1e-19 68.8 8.8 1.3e-09 37.6 0.1 3.8 4 0 0 4 4 4 3 Regulator of chromosome condensation (RCC1) repeat RCC1 PF00415.18 gi|89255602|ref|YP_512963.1| - 2.3e-16 60.2 1.6 9.8e-06 26.1 0.0 4.4 5 0 0 5 5 5 3 Regulator of chromosome condensation (RCC1) repeat DUF1459 PF07312.11 gi|89255602|ref|YP_512963.1| - 0.033 14.4 5.0 7.5 6.8 0.1 3.2 2 1 1 3 3 3 0 Protein of unknown function (DUF1459) ig PF00047.25 gi|89255602|ref|YP_512963.1| - 0.24 11.6 2.6 1.6 9.0 0.1 2.8 3 0 0 3 3 3 0 Immunoglobulin domain PGP_phosphatase PF09419.10 gi|89255603|ref|YP_512964.1| - 4.9e-09 36.0 0.0 9.8e-09 35.0 0.0 1.4 1 1 0 1 1 1 1 Mitochondrial PGP phosphatase HAD_2 PF13419.6 gi|89255603|ref|YP_512964.1| - 0.022 14.8 0.0 0.079 13.0 0.0 1.9 1 1 1 2 2 2 0 Haloacid dehalogenase-like hydrolase DUF4538 PF15061.6 gi|89255603|ref|YP_512964.1| - 0.047 13.4 0.0 0.092 12.5 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4538) Hydrolase PF00702.26 gi|89255603|ref|YP_512964.1| - 0.11 12.8 0.0 0.77 10.0 0.0 1.8 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase FKBP_N PF01346.18 gi|89255604|ref|YP_512965.1| - 6.8e-05 23.8 0.8 0.0028 18.6 0.5 2.3 2 1 0 2 2 2 2 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase TP_methylase PF00590.20 gi|89255605|ref|YP_512966.1| - 2.9e-34 118.9 0.0 3.8e-34 118.5 0.0 1.2 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Mur_ligase_M PF08245.12 gi|89255606|ref|YP_512967.1| - 2.4e-22 79.9 0.2 4.1e-22 79.1 0.2 1.4 1 0 0 1 1 1 1 Mur ligase middle domain Mur_ligase_C PF02875.21 gi|89255606|ref|YP_512967.1| - 4.4e-18 65.3 0.0 2.6e-17 62.8 0.0 2.2 2 0 0 2 2 2 1 Mur ligase family, glutamate ligase domain Mur_ligase PF01225.25 gi|89255606|ref|YP_512967.1| - 2.6e-14 53.3 0.2 5.6e-14 52.2 0.2 1.6 1 0 0 1 1 1 1 Mur ligase family, catalytic domain 2-Hacid_dh_C PF02826.19 gi|89255606|ref|YP_512967.1| - 0.07 12.5 0.0 0.12 11.7 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|89255606|ref|YP_512967.1| - 0.076 12.3 0.5 0.14 11.5 0.5 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Shikimate_dh_N PF08501.11 gi|89255607|ref|YP_512968.1| - 1.9e-21 76.1 0.1 3.8e-21 75.1 0.1 1.5 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain Shikimate_DH PF01488.20 gi|89255607|ref|YP_512968.1| - 1.1e-11 45.0 0.8 3.3e-11 43.4 0.1 2.0 2 1 1 3 3 3 1 Shikimate / quinate 5-dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|89255607|ref|YP_512968.1| - 0.00013 22.3 0.8 0.00031 21.0 0.1 1.8 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_7 PF13241.6 gi|89255607|ref|YP_512968.1| - 0.025 15.0 0.2 0.09 13.2 0.0 1.9 2 0 0 2 2 2 0 Putative NAD(P)-binding DUF2405 PF10293.9 gi|89255607|ref|YP_512968.1| - 0.058 13.3 0.1 0.11 12.5 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF2405) Ribosomal_L34 PF00468.17 gi|89255609|ref|YP_512970.1| - 6.3e-24 83.7 11.4 6.7e-24 83.6 11.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L34 Ribonuclease_P PF00825.18 gi|89255610|ref|YP_512971.1| - 2.6e-19 69.3 0.8 2.9e-19 69.2 0.8 1.0 1 0 0 1 1 1 1 Ribonuclease P Lipoprotein_22 PF17294.2 gi|89255610|ref|YP_512971.1| - 0.0033 17.1 0.3 0.0057 16.3 0.1 1.5 2 0 0 2 2 2 1 Uncharacterised lipoprotein family Complex1_LYR PF05347.15 gi|89255610|ref|YP_512971.1| - 0.0077 16.3 2.5 0.017 15.2 0.4 2.3 2 1 1 3 3 3 1 Complex 1 protein (LYR family) UAE_UbL PF14732.6 gi|89255610|ref|YP_512971.1| - 0.066 13.8 0.4 0.47 11.1 0.1 2.0 2 0 0 2 2 2 0 Ubiquitin/SUMO-activating enzyme ubiquitin-like domain YidD PF01809.18 gi|89255611|ref|YP_512972.1| - 4e-26 90.7 2.2 4.8e-26 90.4 2.2 1.1 1 0 0 1 1 1 1 Putative membrane protein insertion efficiency factor Whib PF02467.16 gi|89255611|ref|YP_512972.1| - 0.049 14.2 0.0 0.066 13.8 0.0 1.2 1 0 0 1 1 1 0 Transcription factor WhiB 60KD_IMP PF02096.20 gi|89255612|ref|YP_512973.1| - 3.6e-64 215.7 9.2 6.6e-64 214.8 9.2 1.5 1 0 0 1 1 1 1 60Kd inner membrane protein YidC_periplas PF14849.6 gi|89255612|ref|YP_512973.1| - 3.7e-60 204.2 1.4 5.5e-60 203.7 1.4 1.3 1 0 0 1 1 1 1 YidC periplasmic domain Vpu PF00558.19 gi|89255612|ref|YP_512973.1| - 0.046 13.5 0.0 0.11 12.2 0.0 1.7 1 0 0 1 1 1 0 Vpu protein Lip_A_acyltrans PF03279.13 gi|89255613|ref|YP_512974.1| - 4e-61 206.8 0.5 4.5e-61 206.6 0.5 1.0 1 0 0 1 1 1 1 Bacterial lipid A biosynthesis acyltransferase DUF5456 PF17539.2 gi|89255613|ref|YP_512974.1| - 0.046 13.6 0.0 0.081 12.8 0.0 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5456) Lip_A_acyltrans PF03279.13 gi|89255614|ref|YP_512975.1| - 1.4e-53 182.0 0.0 1.7e-53 181.7 0.0 1.0 1 0 0 1 1 1 1 Bacterial lipid A biosynthesis acyltransferase ComP_DUS PF16732.5 gi|89255615|ref|YP_512976.1| - 2.2e-16 60.5 1.7 2.5e-16 60.3 1.7 1.1 1 0 0 1 1 1 1 Type IV minor pilin ComP, DNA uptake sequence receptor N_methyl PF07963.12 gi|89255615|ref|YP_512976.1| - 3.7e-08 32.6 2.6 5.6e-08 32.0 2.6 1.3 1 0 0 1 1 1 1 Prokaryotic N-terminal methylation motif EFP_N PF08207.12 gi|89255616|ref|YP_512977.1| - 8.8e-27 92.9 2.1 6.1e-25 87.0 0.8 2.5 2 0 0 2 2 2 2 Elongation factor P (EF-P) KOW-like domain Elong-fact-P_C PF09285.11 gi|89255616|ref|YP_512977.1| - 2.6e-25 87.9 0.6 4.8e-25 87.1 0.6 1.5 1 0 0 1 1 1 1 Elongation factor P, C-terminal EFP PF01132.20 gi|89255616|ref|YP_512977.1| - 2.1e-21 75.7 2.0 3.7e-21 74.9 2.0 1.4 1 0 0 1 1 1 1 Elongation factor P (EF-P) OB domain CRR7 PF12095.8 gi|89255616|ref|YP_512977.1| - 0.038 14.4 0.1 0.097 13.1 0.1 1.6 1 1 0 1 1 1 0 Protein CHLORORESPIRATORY REDUCTION 7 Phage_hub_GP28 PF11110.8 gi|89255616|ref|YP_512977.1| - 0.12 12.2 0.0 0.15 11.9 0.0 1.2 1 0 0 1 1 1 0 Baseplate hub distal subunit RNase_T PF00929.24 gi|89255617|ref|YP_512978.1| - 2.1e-34 119.5 0.1 2.5e-34 119.2 0.1 1.1 1 0 0 1 1 1 1 Exonuclease DUF5051 PF16473.5 gi|89255617|ref|YP_512978.1| - 5.3e-09 36.3 0.3 6.3e-09 36.0 0.3 1.1 1 0 0 1 1 1 1 3' exoribonuclease, RNase T-like PP_kinase_N PF13089.6 gi|89255617|ref|YP_512978.1| - 0.054 13.8 0.0 0.18 12.1 0.0 1.7 2 0 0 2 2 2 0 Polyphosphate kinase N-terminal domain DHC PF09626.10 gi|89255618|ref|YP_512979.1| - 0.037 14.9 0.0 0.04 14.8 0.0 1.1 1 0 0 1 1 1 0 Dihaem cytochrome c DDE_3 PF13358.6 gi|89255619|ref|YP_512980.1| - 9.9e-30 103.2 0.2 3.2e-29 101.6 0.0 1.8 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.16 gi|89255619|ref|YP_512980.1| - 0.0029 17.6 1.5 0.0084 16.2 0.6 2.3 2 1 0 2 2 2 1 Transposase HTH_29 PF13551.6 gi|89255619|ref|YP_512980.1| - 0.0033 17.4 0.0 0.008 16.2 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn helix HTH_40 PF14493.6 gi|89255619|ref|YP_512980.1| - 0.011 16.2 0.1 0.069 13.6 0.0 2.3 3 1 0 3 3 3 0 Helix-turn-helix domain HTH_28 PF13518.6 gi|89255619|ref|YP_512980.1| - 0.026 14.6 0.0 0.073 13.2 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain CENP-B_N PF04218.13 gi|89255619|ref|YP_512980.1| - 0.097 12.3 0.0 0.98 9.1 0.0 2.5 3 0 0 3 3 3 0 CENP-B N-terminal DNA-binding domain HTH_23 PF13384.6 gi|89255619|ref|YP_512980.1| - 0.12 12.2 0.0 0.34 10.8 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain rve PF00665.26 gi|89255619|ref|YP_512980.1| - 0.15 12.3 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 Integrase core domain DDE_Tnp_ISAZ013 PF07592.11 gi|89255619|ref|YP_512980.1| - 0.17 10.9 0.3 1.1 8.1 0.1 2.0 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain MFS_1 PF07690.16 gi|89255620|ref|YP_512981.1| - 1.8e-34 119.2 38.5 2.4e-34 118.8 38.5 1.0 1 0 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|89255620|ref|YP_512981.1| - 4.6e-13 48.9 8.9 4.6e-13 48.9 8.9 2.3 1 1 1 2 2 2 1 Sugar (and other) transporter DUF4191 PF13829.6 gi|89255620|ref|YP_512981.1| - 0.22 10.9 5.1 0.34 10.2 1.5 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4191) SBP_bac_3 PF00497.20 gi|89255621|ref|YP_512982.1| - 8.3e-31 107.2 2.5 1e-30 106.9 2.5 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 FERM_N_2 PF18038.1 gi|89255621|ref|YP_512982.1| - 0.031 15.1 0.5 0.12 13.2 0.3 2.0 2 0 0 2 2 2 0 FERM N-terminal domain Lig_chan-Glu_bd PF10613.9 gi|89255621|ref|YP_512982.1| - 0.052 13.7 0.1 0.27 11.4 0.1 2.1 1 1 0 1 1 1 0 Ligated ion channel L-glutamate- and glycine-binding site Cyt_bd_oxida_II PF02322.15 gi|89255622|ref|YP_512983.1| - 3.2e-90 302.6 33.7 3.7e-90 302.4 33.7 1.0 1 0 0 1 1 1 1 Cytochrome bd terminal oxidase subunit II Cyt_bd_oxida_I PF01654.17 gi|89255623|ref|YP_512984.1| - 5.3e-165 549.1 17.6 6.1e-165 548.9 17.6 1.0 1 0 0 1 1 1 1 Cytochrome bd terminal oxidase subunit I MFS_1 PF07690.16 gi|89255624|ref|YP_512985.1| - 5.6e-47 160.4 80.0 3.9e-39 134.6 44.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|89255624|ref|YP_512985.1| - 1.7e-10 40.4 18.8 1.7e-10 40.4 18.8 2.8 1 1 0 3 3 3 2 Sugar (and other) transporter MFS_3 PF05977.13 gi|89255624|ref|YP_512985.1| - 0.0081 14.6 0.5 0.0081 14.6 0.5 2.7 2 1 1 3 3 3 2 Transmembrane secretion effector CD34_antigen PF06365.12 gi|89255624|ref|YP_512985.1| - 0.33 10.5 2.0 17 4.9 0.1 2.3 2 0 0 2 2 2 0 CD34/Podocalyxin family COX_ARM PF06481.14 gi|89255625|ref|YP_512986.1| - 2.1e-15 56.4 0.2 4.3e-15 55.3 0.2 1.5 1 0 0 1 1 1 1 COX Aromatic Rich Motif COX2 PF00116.20 gi|89255625|ref|YP_512986.1| - 2.6e-05 24.1 2.1 4.1e-05 23.5 0.0 2.2 2 1 1 3 3 3 1 Cytochrome C oxidase subunit II, periplasmic domain COX2_TM PF02790.15 gi|89255625|ref|YP_512986.1| - 0.0074 16.4 5.7 0.015 15.5 5.7 1.5 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, transmembrane domain DUF1461 PF07314.11 gi|89255625|ref|YP_512986.1| - 0.028 14.3 1.7 0.057 13.3 1.7 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1461) DUF3671 PF12420.8 gi|89255625|ref|YP_512986.1| - 2.1 8.5 4.8 1.2 9.3 2.3 1.9 2 0 0 2 2 2 0 Protein of unknown function DUF3923 PF13061.6 gi|89255625|ref|YP_512986.1| - 4.5 7.4 11.6 3.6 7.7 0.7 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3923) COX1 PF00115.20 gi|89255626|ref|YP_512987.1| - 8.1e-137 456.6 77.9 8.1e-137 456.6 77.9 2.5 3 0 0 3 3 3 1 Cytochrome C and Quinol oxidase polypeptide I COX3 PF00510.18 gi|89255627|ref|YP_512988.1| - 3.1e-14 53.4 27.8 5.5e-14 52.6 27.8 1.4 1 1 0 1 1 1 1 Cytochrome c oxidase subunit III COX4_pro PF03626.14 gi|89255628|ref|YP_512989.1| - 5.6e-15 55.5 15.7 7.1e-15 55.2 15.7 1.1 1 0 0 1 1 1 1 Prokaryotic Cytochrome C oxidase subunit IV ABC_export PF16962.5 gi|89255628|ref|YP_512989.1| - 0.049 12.1 15.0 0.056 11.9 15.0 1.0 1 0 0 1 1 1 0 Putative ABC exporter ESSS PF10183.9 gi|89255628|ref|YP_512989.1| - 0.13 12.5 5.3 1.6 9.0 0.8 2.1 2 0 0 2 2 2 0 ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) DUF5336 PF17270.2 gi|89255628|ref|YP_512989.1| - 0.23 11.1 6.1 0.26 10.9 6.1 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5336) Endomucin PF07010.12 gi|89255628|ref|YP_512989.1| - 4.4 7.2 4.3 21 5.0 0.3 2.2 2 0 0 2 2 2 0 Endomucin UbiA PF01040.18 gi|89255629|ref|YP_512990.1| - 7.6e-56 189.2 23.5 8.8e-56 189.0 23.5 1.0 1 0 0 1 1 1 1 UbiA prenyltransferase family Hexapep PF00132.24 gi|89255630|ref|YP_512991.1| - 3.5e-31 105.8 45.9 5.8e-09 35.3 3.1 6.5 3 2 2 6 6 6 6 Bacterial transferase hexapeptide (six repeats) LpxD PF04613.14 gi|89255630|ref|YP_512991.1| - 7.3e-12 44.9 0.2 1.2e-11 44.2 0.2 1.3 1 0 0 1 1 1 1 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD Hexapep_2 PF14602.6 gi|89255630|ref|YP_512991.1| - 8.4e-12 44.6 38.0 1e-07 31.5 4.5 5.8 4 1 1 5 5 5 4 Hexapeptide repeat of succinyl-transferase Arnt_C PF18583.1 gi|89255630|ref|YP_512991.1| - 0.0096 15.5 0.1 0.019 14.6 0.1 1.4 1 0 0 1 1 1 1 Aminoarabinose transferase C-terminal domain DUF3977 PF13122.6 gi|89255631|ref|YP_512992.1| - 0.016 15.4 0.4 0.045 14.0 0.1 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF3977) Chordopox_A30L PF06015.12 gi|89255631|ref|YP_512992.1| - 1.3 8.8 5.2 6.3 6.7 0.1 2.9 3 0 0 3 3 3 0 Chordopoxvirus A30L protein Phos_pyr_kin PF08543.12 gi|89255632|ref|YP_512993.1| - 5.4e-17 62.0 0.0 6.3e-17 61.8 0.0 1.1 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase PfkB PF00294.24 gi|89255632|ref|YP_512993.1| - 2.2e-11 43.6 0.0 5.7e-11 42.3 0.0 1.7 2 0 0 2 2 2 1 pfkB family carbohydrate kinase Carb_kinase PF01256.17 gi|89255632|ref|YP_512993.1| - 0.056 12.9 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 Carbohydrate kinase DUF3568 PF12092.8 gi|89255633|ref|YP_512994.1| - 8.1e-38 129.3 4.6 9.1e-38 129.2 4.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3568) DUF3875 PF12991.7 gi|89255633|ref|YP_512994.1| - 0.1 12.5 0.1 0.29 11.1 0.1 1.7 1 0 0 1 1 1 0 Domain of unknown function, B. Theta Gene description (DUF3875) AAA_3 PF07726.11 gi|89255634|ref|YP_512995.1| - 8.7e-64 213.3 0.0 1.7e-63 212.3 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|89255634|ref|YP_512995.1| - 8.7e-18 63.9 0.0 1.7e-17 63.0 0.0 1.5 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|89255634|ref|YP_512995.1| - 2.9e-12 46.8 0.0 8.4e-12 45.3 0.0 1.8 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) MCM PF00493.23 gi|89255634|ref|YP_512995.1| - 5.7e-06 25.6 0.0 2e-05 23.8 0.0 1.9 1 1 0 1 1 1 1 MCM P-loop domain Mg_chelatase PF01078.21 gi|89255634|ref|YP_512995.1| - 9.6e-05 21.9 0.1 0.02 14.3 0.0 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI RuvB_N PF05496.12 gi|89255634|ref|YP_512995.1| - 0.00051 19.8 0.1 0.011 15.5 0.0 2.6 2 1 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain Sigma54_activat PF00158.26 gi|89255634|ref|YP_512995.1| - 0.0011 18.7 0.0 0.0026 17.5 0.0 1.7 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA PF00004.29 gi|89255634|ref|YP_512995.1| - 0.1 13.1 0.0 0.76 10.2 0.0 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|89255634|ref|YP_512995.1| - 0.11 12.8 0.0 0.38 11.1 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain DUF58 PF01882.18 gi|89255635|ref|YP_512996.1| - 2.6e-21 75.7 0.0 6.1e-21 74.5 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function DUF58 DNA_pol_alpha_N PF12254.8 gi|89255635|ref|YP_512996.1| - 1.6 8.9 4.8 0.51 10.5 0.2 2.4 3 0 0 3 3 3 0 DNA polymerase alpha subunit p180 N terminal DUF4381 PF14316.6 gi|89255636|ref|YP_512997.1| - 9.4e-39 133.0 2.0 1.1e-38 132.8 2.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4381) PIG-P PF08510.12 gi|89255636|ref|YP_512997.1| - 0.0018 18.2 0.1 0.0021 17.9 0.1 1.3 1 0 0 1 1 1 1 PIG-P DUF4051 PF13260.6 gi|89255636|ref|YP_512997.1| - 0.023 14.4 0.4 0.046 13.5 0.4 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF4051) Selenoprotein_S PF06936.11 gi|89255636|ref|YP_512997.1| - 0.027 14.3 1.0 0.038 13.8 1.0 1.5 1 1 0 1 1 1 0 Selenoprotein S (SelS) OrsD PF12013.8 gi|89255636|ref|YP_512997.1| - 0.049 14.1 0.0 0.076 13.5 0.0 1.4 1 0 0 1 1 1 0 Orsellinic acid/F9775 biosynthesis cluster protein D FtsH_ext PF06480.15 gi|89255636|ref|YP_512997.1| - 0.078 13.3 0.1 0.12 12.7 0.1 1.4 1 1 0 1 1 1 0 FtsH Extracellular FeoB_associated PF12669.7 gi|89255636|ref|YP_512997.1| - 0.28 11.6 0.9 0.42 11.1 0.9 1.2 1 0 0 1 1 1 0 FeoB-associated Cys-rich membrane protein VWA PF00092.28 gi|89255637|ref|YP_512998.1| - 7.8e-27 94.6 0.2 1e-26 94.3 0.2 1.1 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_2 PF13519.6 gi|89255637|ref|YP_512998.1| - 1.5e-15 57.7 0.1 4e-15 56.4 0.0 1.7 2 0 0 2 2 2 1 von Willebrand factor type A domain DUF1194 PF06707.11 gi|89255637|ref|YP_512998.1| - 0.00067 18.9 0.1 0.01 15.1 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF1194) BatA PF07584.11 gi|89255637|ref|YP_512998.1| - 0.001 19.4 6.3 0.11 12.9 0.4 2.4 2 0 0 2 2 2 2 Aerotolerance regulator N-terminal Ssl1 PF04056.14 gi|89255637|ref|YP_512998.1| - 0.11 12.3 0.0 0.18 11.6 0.0 1.4 1 1 0 1 1 1 0 Ssl1-like VWA_2 PF13519.6 gi|89255638|ref|YP_512999.1| - 4.5e-17 62.6 0.7 9.2e-17 61.6 0.2 1.7 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA PF00092.28 gi|89255638|ref|YP_512999.1| - 2.1e-09 37.9 1.0 2.9e-09 37.4 1.0 1.2 1 0 0 1 1 1 1 von Willebrand factor type A domain BatA PF07584.11 gi|89255638|ref|YP_512999.1| - 0.00062 20.1 4.2 0.0012 19.1 4.2 1.5 1 0 0 1 1 1 1 Aerotolerance regulator N-terminal MGS PF02142.22 gi|89255638|ref|YP_512999.1| - 0.0061 16.7 2.8 0.69 10.1 0.0 3.1 3 0 0 3 3 3 1 MGS-like domain APS_kinase PF01583.20 gi|89255638|ref|YP_512999.1| - 0.019 14.8 0.0 0.04 13.8 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase VWA_CoxE PF05762.14 gi|89255638|ref|YP_512999.1| - 0.055 12.9 0.0 0.09 12.2 0.0 1.3 1 0 0 1 1 1 0 VWA domain containing CoxE-like protein RC-P840_PscD PF10657.9 gi|89255638|ref|YP_512999.1| - 0.13 12.4 0.7 16 5.5 0.0 2.9 2 1 1 3 3 3 0 Photosystem P840 reaction centre protein PscD Transketolase_C PF02780.20 gi|89255638|ref|YP_512999.1| - 0.15 12.0 0.0 0.34 10.8 0.0 1.5 1 0 0 1 1 1 0 Transketolase, C-terminal domain TPR_2 PF07719.17 gi|89255639|ref|YP_513000.1| - 1.3e-12 46.8 12.8 1.4e-07 31.1 0.1 3.8 2 2 2 4 4 4 3 Tetratricopeptide repeat TPR_1 PF00515.28 gi|89255639|ref|YP_513000.1| - 2e-12 46.4 11.9 4.1e-10 39.0 0.2 3.4 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_6 PF13174.6 gi|89255639|ref|YP_513000.1| - 4.9e-09 36.2 6.6 0.00026 21.4 0.1 3.8 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_11 PF13414.6 gi|89255639|ref|YP_513000.1| - 4e-08 32.8 0.4 4e-08 32.8 0.4 2.8 3 0 0 3 3 3 1 TPR repeat TPR_16 PF13432.6 gi|89255639|ref|YP_513000.1| - 1.8e-06 28.4 0.8 0.0022 18.6 0.3 3.1 1 1 3 4 4 4 2 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|89255639|ref|YP_513000.1| - 3.1e-06 27.3 3.2 2.2e-05 24.6 3.3 2.2 1 1 0 1 1 1 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_7 PF13176.6 gi|89255639|ref|YP_513000.1| - 1.1e-05 25.1 3.4 0.0003 20.6 0.1 3.4 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_14 PF13428.6 gi|89255639|ref|YP_513000.1| - 4e-05 24.1 0.1 0.0029 18.3 0.0 3.1 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_8 PF13181.6 gi|89255639|ref|YP_513000.1| - 7.2e-05 22.7 13.5 0.00036 20.5 0.2 4.0 2 2 1 3 3 3 1 Tetratricopeptide repeat TPR_12 PF13424.6 gi|89255639|ref|YP_513000.1| - 0.00022 21.5 3.1 0.025 14.8 0.1 3.1 1 1 1 3 3 3 1 Tetratricopeptide repeat TPR_19 PF14559.6 gi|89255639|ref|YP_513000.1| - 0.011 16.2 3.1 0.11 13.0 2.5 2.9 1 1 1 2 2 2 0 Tetratricopeptide repeat TPR_9 PF13371.6 gi|89255639|ref|YP_513000.1| - 0.039 14.1 0.0 0.45 10.7 0.0 2.4 3 0 0 3 3 2 0 Tetratricopeptide repeat SAPS PF04499.15 gi|89255639|ref|YP_513000.1| - 0.042 12.6 21.2 0.049 12.4 21.2 1.3 1 0 0 1 1 1 0 SIT4 phosphatase-associated protein TPR_3 PF07720.12 gi|89255639|ref|YP_513000.1| - 0.25 11.4 14.8 7.3 6.7 0.6 3.6 3 1 0 3 3 3 0 Tetratricopeptide repeat TPR_10 PF13374.6 gi|89255639|ref|YP_513000.1| - 0.36 10.8 3.4 1.2 9.1 0.1 2.9 3 0 0 3 3 3 0 Tetratricopeptide repeat GAGA_bind PF06217.12 gi|89255639|ref|YP_513000.1| - 0.67 10.2 20.1 0.96 9.7 20.1 1.3 1 0 0 1 1 1 0 GAGA binding protein-like family CNDH2_C PF16858.5 gi|89255639|ref|YP_513000.1| - 0.79 9.5 29.3 0.98 9.2 29.3 1.3 1 0 0 1 1 1 0 Condensin II complex subunit CAP-H2 or CNDH2, C-term Fis1_TPR_C PF14853.6 gi|89255639|ref|YP_513000.1| - 0.79 9.8 10.4 0.59 10.2 0.2 3.5 3 1 0 3 3 3 0 Fis1 C-terminal tetratricopeptide repeat Zip PF02535.22 gi|89255639|ref|YP_513000.1| - 1.9 7.6 19.9 2.5 7.2 19.9 1.2 1 0 0 1 1 1 0 ZIP Zinc transporter TPR_17 PF13431.6 gi|89255639|ref|YP_513000.1| - 2.4 8.7 9.8 46 4.7 0.0 4.6 3 1 1 4 4 4 0 Tetratricopeptide repeat ALMT PF11744.8 gi|89255639|ref|YP_513000.1| - 2.7 6.7 20.7 3.3 6.5 20.7 1.1 1 0 0 1 1 1 0 Aluminium activated malate transporter BatD PF13584.6 gi|89255640|ref|YP_513001.1| - 1e-96 324.7 10.2 1.3e-96 324.3 10.2 1.0 1 0 0 1 1 1 1 Oxygen tolerance TRAPPC10 PF12584.8 gi|89255640|ref|YP_513001.1| - 5.9e-06 26.1 0.0 0.015 15.0 0.0 3.3 2 1 0 3 3 3 2 Trafficking protein particle complex subunit 10, TRAPPC10 Peptidase_C15 PF01470.17 gi|89255641|ref|YP_513002.1| - 1.6e-80 270.0 2.0 1.9e-80 269.8 2.0 1.0 1 0 0 1 1 1 1 Pyroglutamyl peptidase BID PF06393.11 gi|89255642|ref|YP_513003.1| - 0.09 12.3 0.0 0.13 11.8 0.0 1.2 1 0 0 1 1 1 0 BH3 interacting domain (BID) DNA_pol3_chi PF04364.13 gi|89255643|ref|YP_513004.1| - 1.3e-21 77.2 0.1 1.4e-21 77.1 0.1 1.0 1 0 0 1 1 1 1 DNA polymerase III chi subunit, HolC tRNA-synt_1 PF00133.22 gi|89255644|ref|YP_513005.1| - 3.6e-215 715.8 1.9 3.8e-214 712.4 0.4 2.7 2 1 0 2 2 2 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|89255644|ref|YP_513005.1| - 4.4e-37 127.4 1.0 8.8e-37 126.4 1.0 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA Val_tRNA-synt_C PF10458.9 gi|89255644|ref|YP_513005.1| - 8.8e-19 67.6 9.0 2.7e-18 66.0 9.0 1.9 1 0 0 1 1 1 1 Valyl tRNA synthetase tRNA binding arm tRNA-synt_1g PF09334.11 gi|89255644|ref|YP_513005.1| - 9e-16 57.6 0.2 2.3e-05 23.4 0.0 4.4 5 0 0 5 5 5 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.6 gi|89255644|ref|YP_513005.1| - 7.9e-12 45.1 0.0 7.2e-09 35.4 0.0 2.7 1 1 1 2 2 2 2 Leucyl-tRNA synthetase, Domain 2 End3 PF12761.7 gi|89255644|ref|YP_513005.1| - 0.037 14.2 2.7 0.071 13.3 2.7 1.4 1 0 0 1 1 1 0 Actin cytoskeleton-regulatory complex protein END3 Bcr-Abl_Oligo PF09036.10 gi|89255644|ref|YP_513005.1| - 0.043 13.8 0.2 0.13 12.3 0.2 1.8 1 0 0 1 1 1 0 Bcr-Abl oncoprotein oligomerisation domain TPD52 PF04201.15 gi|89255644|ref|YP_513005.1| - 0.12 12.0 1.3 14 5.3 0.1 2.4 2 0 0 2 2 2 0 Tumour protein D52 family ABC_tran_CTD PF16326.5 gi|89255644|ref|YP_513005.1| - 0.5 10.6 5.3 1.3 9.3 5.3 1.7 1 0 0 1 1 1 0 ABC transporter C-terminal domain COG2 PF06148.11 gi|89255644|ref|YP_513005.1| - 9.6 6.3 7.7 4 7.5 1.9 2.7 3 0 0 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 Mrr_cat PF04471.12 gi|89255646|ref|YP_513007.1| - 0.0055 16.7 0.2 0.013 15.5 0.1 1.7 2 0 0 2 2 2 1 Restriction endonuclease FMN_dh PF01070.18 gi|89255648|ref|YP_513009.1| - 1.9e-124 415.2 0.0 2.2e-124 415.0 0.0 1.0 1 0 0 1 1 1 1 FMN-dependent dehydrogenase Glu_synthase PF01645.17 gi|89255648|ref|YP_513009.1| - 0.0048 16.1 0.4 0.011 14.9 0.4 1.6 1 1 0 1 1 1 1 Conserved region in glutamate synthase IMPDH PF00478.25 gi|89255648|ref|YP_513009.1| - 0.022 13.8 1.9 0.085 11.8 1.2 2.2 1 1 1 2 2 2 0 IMP dehydrogenase / GMP reductase domain DUF3685 PF12452.8 gi|89255648|ref|YP_513009.1| - 0.045 13.4 0.4 0.079 12.7 0.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3685) IGPS PF00218.21 gi|89255648|ref|YP_513009.1| - 0.068 12.3 0.2 0.22 10.6 0.1 1.8 2 1 0 2 2 2 0 Indole-3-glycerol phosphate synthase Nitroreductase PF00881.24 gi|89255649|ref|YP_513010.1| - 5.3e-19 68.9 0.1 1.3e-18 67.6 0.1 1.6 1 1 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|89255649|ref|YP_513010.1| - 1.2e-05 25.0 0.1 6.6e-05 22.6 0.1 2.0 2 0 0 2 2 2 1 Putative TM nitroreductase NUDIX PF00293.28 gi|89255650|ref|YP_513011.1| - 1.1e-19 70.8 0.0 1.2e-19 70.6 0.0 1.0 1 0 0 1 1 1 1 NUDIX domain Flavi_DEAD PF07652.14 gi|89255650|ref|YP_513011.1| - 0.00065 19.7 0.0 0.00086 19.3 0.0 1.1 1 0 0 1 1 1 1 Flavivirus DEAD domain NUDIX_2 PF13869.6 gi|89255650|ref|YP_513011.1| - 0.00071 19.2 0.0 0.0011 18.6 0.0 1.5 1 1 0 1 1 1 1 Nucleotide hydrolase HOOK PF05622.12 gi|89255650|ref|YP_513011.1| - 0.19 9.9 0.1 0.23 9.6 0.1 1.0 1 0 0 1 1 1 0 HOOK protein Lyase_1 PF00206.20 gi|89255651|ref|YP_513012.1| - 3e-105 352.0 0.2 4.5e-105 351.5 0.2 1.2 1 0 0 1 1 1 1 Lyase FumaraseC_C PF10415.9 gi|89255651|ref|YP_513012.1| - 1.4e-20 73.4 1.3 1.3e-19 70.3 0.1 2.7 2 0 0 2 2 2 1 Fumarase C C-terminus tRNA-synt_1c PF00749.21 gi|89255652|ref|YP_513013.1| - 1.7e-111 372.1 0.0 2.1e-111 371.8 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain Dpoe2NT PF12213.8 gi|89255653|ref|YP_513014.1| - 0.19 12.0 0.0 0.37 11.1 0.0 1.4 1 0 0 1 1 1 0 DNA polymerases epsilon N terminal DDE_Tnp_1_2 PF13586.6 gi|89255654|ref|YP_513015.1| - 1.3e-13 51.2 0.0 2.2e-13 50.4 0.0 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|89255654|ref|YP_513015.1| - 5.6e-12 45.8 2.0 5e-11 42.6 2.0 2.0 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 gi|89255654|ref|YP_513015.1| - 8.3e-08 32.4 0.0 1.2e-07 31.8 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF4096 PF13340.6 gi|89255654|ref|YP_513015.1| - 0.0065 16.7 0.0 0.013 15.7 0.0 1.5 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) AA_permease_2 PF13520.6 gi|89255655|ref|YP_513016.1| - 4.5e-37 127.9 44.2 1e-36 126.7 44.3 1.5 1 1 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|89255655|ref|YP_513016.1| - 4.2e-18 65.2 40.7 1.4e-17 63.5 40.7 1.9 1 1 0 1 1 1 1 Amino acid permease Sprouty PF05210.13 gi|89255655|ref|YP_513016.1| - 0.14 12.5 0.4 0.64 10.4 0.1 2.2 2 1 0 2 2 2 0 Sprouty protein (Spry) Amidinotransf PF02274.17 gi|89255656|ref|YP_513017.1| - 5.2e-70 236.2 0.1 4.5e-68 229.9 0.1 2.0 1 1 0 1 1 1 1 Amidinotransferase EAF PF09816.9 gi|89255656|ref|YP_513017.1| - 0.083 13.3 0.0 0.25 11.8 0.0 1.8 1 0 0 1 1 1 0 RNA polymerase II transcription elongation factor DHFR_1 PF00186.19 gi|89255657|ref|YP_513018.1| - 6.6e-60 201.5 0.4 7.5e-60 201.3 0.4 1.0 1 0 0 1 1 1 1 Dihydrofolate reductase YoeB_toxin PF06769.14 gi|89255657|ref|YP_513018.1| - 0.028 14.4 0.1 0.13 12.4 0.1 2.1 1 1 1 2 2 2 0 YoeB-like toxin of bacterial type II toxin-antitoxin system Imm26 PF15428.6 gi|89255657|ref|YP_513018.1| - 0.064 13.5 2.7 0.29 11.4 1.6 2.4 1 1 0 1 1 1 0 Immunity protein 26 Ribosomal_S2 PF00318.20 gi|89255658|ref|YP_513019.1| - 1.5e-92 308.7 0.2 1.7e-92 308.5 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S2 Exog_C PF18026.1 gi|89255658|ref|YP_513019.1| - 0.011 15.8 0.1 0.033 14.2 0.1 1.8 1 0 0 1 1 1 0 Endo/exonuclease (EXOG) C-terminal domain ADH_zinc_N PF00107.26 gi|89255658|ref|YP_513019.1| - 0.018 15.0 2.0 0.57 10.2 0.3 2.8 1 1 2 3 3 3 0 Zinc-binding dehydrogenase DUF5347 PF17282.2 gi|89255658|ref|YP_513019.1| - 0.052 13.9 0.0 0.099 12.9 0.0 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5347) NapD PF03927.13 gi|89255658|ref|YP_513019.1| - 0.069 13.2 0.3 0.25 11.4 0.0 2.0 2 0 0 2 2 2 0 NapD protein Peripla_BP_1 PF00532.21 gi|89255658|ref|YP_513019.1| - 0.073 12.5 0.0 0.21 11.0 0.0 1.8 2 0 0 2 2 2 0 Periplasmic binding proteins and sugar binding domain of LacI family EF_TS PF00889.19 gi|89255659|ref|YP_513020.1| - 6e-70 235.1 8.7 6e-70 235.1 8.7 1.5 2 0 0 2 2 2 1 Elongation factor TS SOR PF07682.11 gi|89255659|ref|YP_513020.1| - 0.017 14.0 0.2 0.032 13.1 0.2 1.4 1 0 0 1 1 1 0 Sulphur oxygenase reductase Fer2_BFD PF04324.15 gi|89255659|ref|YP_513020.1| - 0.31 11.4 2.3 24 5.4 0.2 2.9 2 1 0 2 2 2 0 BFD-like [2Fe-2S] binding domain HOIP-UBA PF16678.5 gi|89255659|ref|YP_513020.1| - 2.4 8.2 6.7 0.6 10.1 0.6 2.6 3 0 0 3 3 3 0 HOIP UBA domain pair AA_kinase PF00696.28 gi|89255660|ref|YP_513021.1| - 6.5e-31 107.8 0.4 7.5e-31 107.6 0.4 1.0 1 0 0 1 1 1 1 Amino acid kinase family RRF PF01765.19 gi|89255661|ref|YP_513022.1| - 1.3e-57 194.3 2.1 1.3e-57 194.3 2.1 1.3 2 0 0 2 2 2 1 Ribosome recycling factor 14-3-3 PF00244.20 gi|89255661|ref|YP_513022.1| - 0.016 14.8 1.9 0.025 14.1 1.9 1.3 1 0 0 1 1 1 0 14-3-3 protein Prefoldin PF02996.17 gi|89255661|ref|YP_513022.1| - 0.94 9.4 7.4 2.4 8.1 0.1 2.3 2 0 0 2 2 2 0 Prefoldin subunit XhlA PF10779.9 gi|89255661|ref|YP_513022.1| - 6.5 7.0 8.7 22 5.3 3.0 2.4 2 0 0 2 2 2 0 Haemolysin XhlA Prenyltransf PF01255.19 gi|89255662|ref|YP_513023.1| - 2.5e-71 239.8 0.0 2.8e-71 239.6 0.0 1.0 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase CTP_transf_1 PF01148.20 gi|89255663|ref|YP_513024.1| - 2.5e-59 201.2 24.1 2.8e-59 201.0 24.1 1.0 1 0 0 1 1 1 1 Cytidylyltransferase family DUF2070 PF09843.9 gi|89255663|ref|YP_513024.1| - 1.5 7.0 23.7 1.9 6.7 23.7 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) DUF92 PF01940.16 gi|89255663|ref|YP_513024.1| - 3.5 7.0 16.5 34 3.7 16.5 2.2 1 1 0 1 1 1 0 Integral membrane protein DUF92 UbiA PF01040.18 gi|89255663|ref|YP_513024.1| - 4.2 6.6 33.2 1.6e+03 -1.9 33.2 2.3 1 1 0 1 1 1 0 UbiA prenyltransferase family dUTPase PF00692.19 gi|89255664|ref|YP_513025.1| - 1.2e-31 109.1 0.0 1.4e-31 108.8 0.0 1.0 1 0 0 1 1 1 1 dUTPase CDP-OH_P_transf PF01066.21 gi|89255665|ref|YP_513026.1| - 4.1e-16 59.5 0.1 4.1e-16 59.5 0.1 2.9 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase Ribosom_S12_S23 PF00164.25 gi|89255666|ref|YP_513027.1| - 6.2e-42 141.8 1.8 7.1e-42 141.6 1.8 1.0 1 0 0 1 1 1 1 Ribosomal protein S12/S23 Ribosomal_S7 PF00177.21 gi|89255667|ref|YP_513028.1| - 1e-65 219.9 6.6 1.2e-65 219.8 6.6 1.0 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e DUF448 PF04296.13 gi|89255667|ref|YP_513028.1| - 0.068 13.0 0.5 0.26 11.2 0.1 2.1 3 0 0 3 3 3 0 Protein of unknown function (DUF448) GTP_EFTU PF00009.27 gi|89255668|ref|YP_513029.1| - 4.2e-67 225.5 0.1 8.2e-67 224.5 0.1 1.5 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 gi|89255668|ref|YP_513029.1| - 2.5e-45 153.2 0.3 5.9e-45 152.0 0.3 1.7 1 0 0 1 1 1 1 Elongation factor G, domain IV EFG_II PF14492.6 gi|89255668|ref|YP_513029.1| - 1.2e-35 121.4 0.1 2.6e-35 120.4 0.1 1.6 1 0 0 1 1 1 1 Elongation Factor G, domain II EFG_C PF00679.24 gi|89255668|ref|YP_513029.1| - 4.6e-33 113.1 0.0 1.1e-31 108.7 0.0 2.9 2 0 0 2 2 2 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.25 gi|89255668|ref|YP_513029.1| - 5.8e-18 65.1 0.4 1.9e-17 63.4 0.4 2.0 1 0 0 1 1 1 1 Elongation factor Tu domain 2 RF3_C PF16658.5 gi|89255668|ref|YP_513029.1| - 1.9e-06 27.7 0.1 4.4e-06 26.5 0.1 1.5 1 0 0 1 1 1 1 Class II release factor RF3, C-terminal domain MMR_HSR1 PF01926.23 gi|89255668|ref|YP_513029.1| - 0.0066 16.5 0.0 0.025 14.7 0.0 2.0 2 0 0 2 2 2 1 50S ribosome-binding GTPase Ribosomal_S10 PF00338.22 gi|89255669|ref|YP_513030.1| - 2.4e-34 117.5 0.4 2.6e-34 117.3 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e Glyco_hydro_85 PF03644.13 gi|89255669|ref|YP_513030.1| - 0.16 11.4 0.0 0.18 11.2 0.0 1.1 1 0 0 1 1 1 0 Glycosyl hydrolase family 85 Ribosomal_L3 PF00297.22 gi|89255670|ref|YP_513031.1| - 1.3e-11 44.1 3.8 1.3e-11 44.1 3.8 2.0 1 1 1 2 2 2 1 Ribosomal protein L3 Ribosomal_L4 PF00573.22 gi|89255671|ref|YP_513032.1| - 9.5e-63 211.4 0.4 1.1e-62 211.2 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family DUF5543 PF17697.1 gi|89255671|ref|YP_513032.1| - 0.11 12.8 0.2 0.19 12.0 0.2 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5543) Ribosomal_L23 PF00276.20 gi|89255672|ref|YP_513033.1| - 6.4e-31 106.6 1.6 7.3e-31 106.4 1.6 1.0 1 0 0 1 1 1 1 Ribosomal protein L23 PaREP1 PF05942.11 gi|89255672|ref|YP_513033.1| - 0.068 13.1 0.5 0.096 12.6 0.5 1.2 1 0 0 1 1 1 0 Archaeal PaREP1/PaREP8 family Ribosomal_L2_C PF03947.18 gi|89255673|ref|YP_513034.1| - 6.6e-60 200.8 2.1 1.4e-59 199.8 2.1 1.6 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.23 gi|89255673|ref|YP_513034.1| - 4.4e-33 113.1 1.5 9.9e-33 112.0 1.5 1.6 1 0 0 1 1 1 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_S19 PF00203.21 gi|89255674|ref|YP_513035.1| - 7.8e-36 121.8 0.4 8.9e-36 121.6 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein S19 Ribosomal_L22 PF00237.19 gi|89255675|ref|YP_513036.1| - 9e-34 115.8 0.2 1e-33 115.7 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Ribosomal_S3_C PF00189.20 gi|89255676|ref|YP_513037.1| - 5.4e-41 139.0 3.6 8.1e-41 138.4 2.0 2.1 2 0 0 2 2 2 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.17 gi|89255676|ref|YP_513037.1| - 2e-20 72.4 4.2 4.3e-20 71.3 4.2 1.6 1 0 0 1 1 1 1 KH domain KH_4 PF13083.6 gi|89255676|ref|YP_513037.1| - 0.0072 16.2 0.2 0.022 14.6 0.1 1.9 1 1 1 2 2 2 1 KH domain YAcAr PF10686.9 gi|89255676|ref|YP_513037.1| - 0.034 14.1 0.1 0.078 12.9 0.1 1.6 1 0 0 1 1 1 0 YspA, cpYpsA-related SLOG family Ribosomal_L16 PF00252.18 gi|89255677|ref|YP_513038.1| - 8.6e-50 168.2 1.9 9.6e-50 168.0 1.9 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e Ribosomal_L29 PF00831.23 gi|89255678|ref|YP_513039.1| - 1.4e-19 69.8 1.4 1.6e-19 69.6 1.4 1.1 1 0 0 1 1 1 1 Ribosomal L29 protein CFAP91 PF14738.6 gi|89255678|ref|YP_513039.1| - 0.033 14.2 1.0 0.033 14.2 1.0 1.1 1 0 0 1 1 1 0 Cilia- and flagella-associated protein 91 Ribosomal_S17 PF00366.20 gi|89255679|ref|YP_513040.1| - 6.8e-30 103.0 4.7 7.9e-30 102.8 4.7 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 Ribosomal_L14 PF00238.19 gi|89255680|ref|YP_513041.1| - 1.3e-54 183.4 1.0 1.5e-54 183.3 1.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e Ribosomal_L6 PF00347.23 gi|89255680|ref|YP_513041.1| - 0.03 15.0 0.8 0.052 14.2 0.8 1.4 1 0 0 1 1 1 0 Ribosomal protein L6 ribosomal_L24 PF17136.4 gi|89255681|ref|YP_513042.1| - 1e-22 80.3 0.6 1.4e-22 79.9 0.6 1.2 1 0 0 1 1 1 1 Ribosomal proteins 50S L24/mitochondrial 39S L24 KOW PF00467.29 gi|89255681|ref|YP_513042.1| - 0.00018 21.3 2.6 0.00018 21.3 2.6 2.0 2 0 0 2 2 2 1 KOW motif Ribosomal_L5_C PF00673.21 gi|89255682|ref|YP_513043.1| - 2.1e-41 140.0 0.0 4.3e-41 139.0 0.0 1.5 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.19 gi|89255682|ref|YP_513043.1| - 1.2e-26 92.7 1.3 2e-26 92.1 1.3 1.3 1 0 0 1 1 1 1 Ribosomal protein L5 DUF2862 PF11061.8 gi|89255682|ref|YP_513043.1| - 0.018 14.9 0.0 0.19 11.6 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2862) Ribosomal_S14 PF00253.21 gi|89255683|ref|YP_513044.1| - 5.7e-25 86.8 0.7 8.5e-25 86.3 0.7 1.3 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e DUF2730 PF10805.8 gi|89255683|ref|YP_513044.1| - 0.012 15.7 0.1 0.014 15.4 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2730) Ribosomal_S8 PF00410.19 gi|89255684|ref|YP_513045.1| - 7.4e-42 142.3 0.0 8.2e-42 142.2 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_L6 PF00347.23 gi|89255685|ref|YP_513046.1| - 1.3e-34 118.7 2.1 1.2e-17 64.3 0.0 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 Antimicrobial15 PF08110.12 gi|89255685|ref|YP_513046.1| - 0.072 13.3 0.1 0.17 12.1 0.1 1.7 1 0 0 1 1 1 0 Ocellatin family Ribosomal_L18p PF00861.22 gi|89255686|ref|YP_513047.1| - 5.1e-39 133.2 1.8 5.6e-39 133.1 1.8 1.0 1 0 0 1 1 1 1 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Ribosomal_S5_C PF03719.15 gi|89255687|ref|YP_513048.1| - 2.7e-29 100.4 0.5 4.2e-29 99.8 0.5 1.3 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_S5 PF00333.20 gi|89255687|ref|YP_513048.1| - 2.8e-27 94.5 4.3 4.3e-27 93.9 4.3 1.3 1 0 0 1 1 1 1 Ribosomal protein S5, N-terminal domain Ribosomal_L30 PF00327.20 gi|89255688|ref|YP_513049.1| - 2e-16 59.6 0.1 2.2e-16 59.4 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_L27A PF00828.19 gi|89255689|ref|YP_513050.1| - 2e-32 112.5 3.5 2.5e-32 112.2 3.5 1.1 1 0 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A SecY PF00344.20 gi|89255690|ref|YP_513051.1| - 1.2e-111 372.9 25.2 1.7e-111 372.4 25.2 1.2 1 0 0 1 1 1 1 SecY translocase Glycoprotein_G PF00802.19 gi|89255690|ref|YP_513051.1| - 0.1 11.9 0.4 0.19 11.1 0.4 1.4 1 0 0 1 1 1 0 Pneumovirus attachment glycoprotein G BatD PF13584.6 gi|89255690|ref|YP_513051.1| - 0.15 10.9 0.3 0.27 10.0 0.3 1.3 1 0 0 1 1 1 0 Oxygen tolerance Pox_A14 PF05767.12 gi|89255690|ref|YP_513051.1| - 0.18 12.0 6.3 0.53 10.5 0.2 3.4 3 0 0 3 3 3 0 Poxvirus virion envelope protein A14 Ribosomal_L36 PF00444.18 gi|89255691|ref|YP_513052.1| - 1.8e-18 66.4 13.6 1.9e-18 66.3 13.6 1.0 1 0 0 1 1 1 1 Ribosomal protein L36 Ribosomal_S13 PF00416.22 gi|89255692|ref|YP_513053.1| - 7.6e-33 113.6 5.5 4.3e-31 108.0 5.5 2.0 1 1 0 1 1 1 1 Ribosomal protein S13/S18 FbpA PF05833.11 gi|89255692|ref|YP_513053.1| - 0.0015 17.4 0.0 0.0018 17.1 0.0 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) HHH_6 PF14579.6 gi|89255692|ref|YP_513053.1| - 0.0041 17.3 0.3 0.37 11.1 0.0 2.2 1 1 1 2 2 2 2 Helix-hairpin-helix motif PsbU PF06514.11 gi|89255692|ref|YP_513053.1| - 0.055 13.5 0.0 0.066 13.2 0.0 1.2 1 0 0 1 1 1 0 Photosystem II 12 kDa extrinsic protein (PsbU) HHH_5 PF14520.6 gi|89255692|ref|YP_513053.1| - 0.15 12.7 0.1 2.9 8.6 0.0 2.3 2 1 1 3 3 3 0 Helix-hairpin-helix domain Ribosomal_S11 PF00411.19 gi|89255693|ref|YP_513054.1| - 2.8e-49 166.1 0.3 3.4e-49 165.8 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein S11 DUF2423 PF10338.9 gi|89255693|ref|YP_513054.1| - 0.19 12.0 3.4 0.45 10.8 3.4 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2423) Ribosomal_S4 PF00163.19 gi|89255694|ref|YP_513055.1| - 3e-31 108.2 2.5 4.9e-31 107.5 2.5 1.3 1 0 0 1 1 1 1 Ribosomal protein S4/S9 N-terminal domain S4 PF01479.25 gi|89255694|ref|YP_513055.1| - 3.7e-16 58.6 0.1 9.1e-16 57.3 0.1 1.7 1 0 0 1 1 1 1 S4 domain S4_2 PF13275.6 gi|89255694|ref|YP_513055.1| - 0.0025 17.6 0.3 0.0054 16.5 0.3 1.7 1 0 0 1 1 1 1 S4 domain TyrRSs_C PF16714.5 gi|89255694|ref|YP_513055.1| - 0.0026 17.6 0.1 0.0067 16.2 0.1 1.8 1 1 0 1 1 1 1 Tyrosyl-tRNA synthetase C-terminal domain RNA_pol_A_CTD PF03118.15 gi|89255695|ref|YP_513056.1| - 1.1e-24 86.0 2.5 1.3e-24 85.7 0.6 2.1 2 0 0 2 2 2 1 Bacterial RNA polymerase, alpha chain C terminal domain RNA_pol_A_bac PF01000.26 gi|89255695|ref|YP_513056.1| - 1.7e-15 57.4 0.4 5.1e-15 55.8 0.2 1.8 2 0 0 2 2 2 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.24 gi|89255695|ref|YP_513056.1| - 3.8e-11 42.2 0.1 8.9e-11 41.1 0.1 1.7 2 0 0 2 2 2 1 RNA polymerase Rpb3/Rpb11 dimerisation domain HHH_5 PF14520.6 gi|89255695|ref|YP_513056.1| - 0.1 13.2 0.1 0.97 10.1 0.0 2.4 2 0 0 2 2 2 0 Helix-hairpin-helix domain Ribosomal_L17 PF01196.19 gi|89255696|ref|YP_513057.1| - 2.4e-32 111.7 0.2 3.1e-32 111.3 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L17 AKAP7_NLS PF10469.9 gi|89255696|ref|YP_513057.1| - 0.026 14.4 0.2 0.031 14.2 0.2 1.1 1 0 0 1 1 1 0 AKAP7 2'5' RNA ligase-like domain DDE_3 PF13358.6 gi|89255697|ref|YP_513058.1| - 2e-29 102.2 0.0 7.5e-29 100.4 0.0 1.8 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_29 PF13551.6 gi|89255697|ref|YP_513058.1| - 0.0029 17.6 0.0 0.0073 16.3 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn helix HTH_Tnp_IS630 PF01710.16 gi|89255697|ref|YP_513058.1| - 0.0032 17.5 1.8 0.0082 16.2 0.8 2.2 2 1 0 2 2 2 1 Transposase HTH_40 PF14493.6 gi|89255697|ref|YP_513058.1| - 0.014 15.8 0.0 0.061 13.8 0.0 2.0 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_28 PF13518.6 gi|89255697|ref|YP_513058.1| - 0.023 14.8 0.0 0.066 13.3 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|89255697|ref|YP_513058.1| - 0.1 12.4 0.0 0.31 10.9 0.0 1.9 1 0 0 1 1 1 0 Homeodomain-like domain rve PF00665.26 gi|89255697|ref|YP_513058.1| - 0.14 12.4 0.0 0.24 11.6 0.0 1.4 1 0 0 1 1 1 0 Integrase core domain Gly_transf_sug PF04488.15 gi|89255698|ref|YP_513059.1| - 2.1e-09 37.9 4.4 5.6e-09 36.5 0.4 3.0 2 1 0 3 3 3 1 Glycosyltransferase sugar-binding region containing DXD motif TcdA_TcdB PF12919.7 gi|89255698|ref|YP_513059.1| - 1.4e-06 27.8 7.4 3.1e-06 26.8 0.2 2.5 1 1 0 2 2 2 2 TcdA/TcdB catalytic glycosyltransferase domain DUF2508 PF10704.9 gi|89255698|ref|YP_513059.1| - 0.012 15.8 0.4 0.026 14.7 0.4 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2508) DDE_3 PF13358.6 gi|89255699|ref|YP_513060.1| - 2.3e-30 105.3 0.1 7.9e-30 103.5 0.0 1.8 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.16 gi|89255699|ref|YP_513060.1| - 0.0029 17.6 1.5 0.0084 16.2 0.6 2.3 2 1 0 2 2 2 1 Transposase HTH_29 PF13551.6 gi|89255699|ref|YP_513060.1| - 0.0033 17.4 0.0 0.008 16.2 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn helix HTH_40 PF14493.6 gi|89255699|ref|YP_513060.1| - 0.0099 16.3 0.1 0.069 13.6 0.0 2.3 3 1 0 3 3 3 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|89255699|ref|YP_513060.1| - 0.026 14.6 0.0 0.073 13.2 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|89255699|ref|YP_513060.1| - 0.12 12.2 0.0 0.34 10.8 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain rve PF00665.26 gi|89255699|ref|YP_513060.1| - 0.15 12.3 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 Integrase core domain DDE_Tnp_ISAZ013 PF07592.11 gi|89255699|ref|YP_513060.1| - 0.17 10.9 0.3 1.1 8.1 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain HSP90 PF00183.18 gi|89255700|ref|YP_513061.1| - 3.2e-132 442.1 21.1 2.8e-130 435.7 20.7 2.1 1 1 1 2 2 2 2 Hsp90 protein HATPase_c_3 PF13589.6 gi|89255700|ref|YP_513061.1| - 9.2e-15 54.7 1.6 2.5e-14 53.3 1.6 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.26 gi|89255700|ref|YP_513061.1| - 1.3e-12 48.2 0.7 2.8e-12 47.1 0.7 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HEPN_RES_NTD1 PF18870.1 gi|89255700|ref|YP_513061.1| - 0.0094 16.1 3.2 0.029 14.6 0.0 3.0 3 0 0 3 3 3 1 HEPN/RES N-terminal domain 1 ZnuA PF01297.17 gi|89255700|ref|YP_513061.1| - 0.02 14.3 0.5 0.93 8.8 0.0 2.7 2 0 0 2 2 2 0 Zinc-uptake complex component A periplasmic Nrap_D6 PF17407.2 gi|89255700|ref|YP_513061.1| - 0.066 13.4 1.1 0.63 10.3 0.2 2.4 2 0 0 2 2 2 0 Nrap protein domain 6 HD PF01966.22 gi|89255700|ref|YP_513061.1| - 0.26 11.5 2.7 27 5.0 0.4 3.1 3 0 0 3 3 3 0 HD domain DDE_3 PF13358.6 gi|89255701|ref|YP_513062.1| - 2.3e-30 105.3 0.1 7.9e-30 103.5 0.0 1.8 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.16 gi|89255701|ref|YP_513062.1| - 0.0029 17.6 1.5 0.0084 16.2 0.6 2.3 2 1 0 2 2 2 1 Transposase HTH_29 PF13551.6 gi|89255701|ref|YP_513062.1| - 0.0033 17.4 0.0 0.008 16.2 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn helix HTH_40 PF14493.6 gi|89255701|ref|YP_513062.1| - 0.0099 16.3 0.1 0.069 13.6 0.0 2.3 3 1 0 3 3 3 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|89255701|ref|YP_513062.1| - 0.026 14.6 0.0 0.073 13.2 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|89255701|ref|YP_513062.1| - 0.12 12.2 0.0 0.34 10.8 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain rve PF00665.26 gi|89255701|ref|YP_513062.1| - 0.15 12.3 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 Integrase core domain DDE_Tnp_ISAZ013 PF07592.11 gi|89255701|ref|YP_513062.1| - 0.17 10.9 0.3 1.1 8.1 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain ELFV_dehydrog PF00208.21 gi|89255702|ref|YP_513063.1| - 1.9e-84 283.2 2.7 2.5e-84 282.8 2.7 1.2 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|89255702|ref|YP_513063.1| - 3.3e-48 162.9 0.0 8.5e-48 161.5 0.0 1.8 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AdoHcyase_NAD PF00670.21 gi|89255702|ref|YP_513063.1| - 0.027 14.6 0.5 0.056 13.5 0.5 1.5 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|89255702|ref|YP_513063.1| - 0.086 12.2 0.1 0.15 11.4 0.1 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DDE_Tnp_1_2 PF13586.6 gi|89255703|ref|YP_513064.1| - 1.1e-13 51.3 0.0 2.1e-13 50.5 0.0 1.5 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|89255703|ref|YP_513064.1| - 5.1e-12 45.9 2.0 4.6e-11 42.8 2.0 1.9 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 gi|89255703|ref|YP_513064.1| - 7.6e-08 32.5 0.0 1.1e-07 32.0 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF4096 PF13340.6 gi|89255703|ref|YP_513064.1| - 0.0062 16.7 0.0 0.012 15.8 0.0 1.5 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) YkuD PF03734.14 gi|89255704|ref|YP_513065.1| - 0.00012 22.5 0.0 0.00023 21.6 0.0 1.4 1 1 0 1 1 1 1 L,D-transpeptidase catalytic domain Orn_Arg_deC_N PF02784.16 gi|89255705|ref|YP_513066.1| - 6.8e-45 153.4 0.2 9.4e-45 152.9 0.2 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.22 gi|89255705|ref|YP_513066.1| - 8.6e-27 93.2 0.0 1e-26 93.0 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AA_permease_2 PF13520.6 gi|89255706|ref|YP_513067.1| - 1.4e-50 172.4 61.9 1.8e-50 172.0 61.9 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|89255706|ref|YP_513067.1| - 3.1e-25 88.7 58.3 4e-25 88.3 58.3 1.0 1 0 0 1 1 1 1 Amino acid permease DNA_binding_1 PF01035.20 gi|89255707|ref|YP_513068.1| - 2.9e-28 97.8 0.0 4.3e-28 97.3 0.0 1.3 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain Put_Phosphatase PF06888.12 gi|89255707|ref|YP_513068.1| - 0.068 12.6 0.1 0.084 12.3 0.1 1.2 1 0 0 1 1 1 0 Putative Phosphatase DUF749 PF05370.11 gi|89255707|ref|YP_513068.1| - 0.08 13.0 0.4 0.2 11.8 0.2 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF749) SNARE_assoc PF09335.11 gi|89255708|ref|YP_513069.1| - 9.5e-26 90.6 11.0 9.5e-26 90.6 11.0 1.9 2 0 0 2 2 2 1 SNARE associated Golgi protein UPF0640 PF15114.6 gi|89255708|ref|YP_513069.1| - 5.5 6.9 8.5 0.34 10.7 2.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0640 Pyr_redox_2 PF07992.14 gi|89255709|ref|YP_513070.1| - 4.3e-57 193.6 4.6 5.6e-57 193.2 4.6 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|89255709|ref|YP_513070.1| - 1.1e-20 73.9 5.1 2.4e-18 66.5 0.0 2.8 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|89255709|ref|YP_513070.1| - 1.4e-20 73.6 0.1 6.1e-20 71.5 0.0 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_3 PF13738.6 gi|89255709|ref|YP_513070.1| - 6.9e-14 51.8 2.5 1.3e-13 50.9 2.5 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|89255709|ref|YP_513070.1| - 8.8e-12 44.8 8.1 1.3e-08 34.4 2.8 3.5 4 0 0 4 4 4 2 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|89255709|ref|YP_513070.1| - 3.4e-07 30.0 0.8 3.5e-05 23.4 0.2 2.3 2 0 0 2 2 2 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|89255709|ref|YP_513070.1| - 1.3e-06 27.4 9.9 0.11 11.2 2.4 4.5 4 1 0 4 4 4 3 HI0933-like protein NAD_binding_8 PF13450.6 gi|89255709|ref|YP_513070.1| - 5.8e-06 26.5 5.0 0.05 13.8 0.1 2.8 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.21 gi|89255709|ref|YP_513070.1| - 1.4e-05 24.6 3.9 0.014 14.7 0.5 3.0 3 0 0 3 3 3 2 Alanine dehydrogenase/PNT, C-terminal domain Lycopene_cycl PF05834.12 gi|89255709|ref|YP_513070.1| - 1.4e-05 24.3 1.6 0.017 14.2 0.1 2.3 2 0 0 2 2 2 2 Lycopene cyclase protein DAO PF01266.24 gi|89255709|ref|YP_513070.1| - 0.00029 20.5 10.3 0.34 10.4 2.8 3.7 4 0 0 4 4 4 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|89255709|ref|YP_513070.1| - 0.0022 17.1 12.9 0.037 13.1 0.1 2.9 3 0 0 3 3 3 2 FAD binding domain NAD_binding_7 PF13241.6 gi|89255709|ref|YP_513070.1| - 0.0061 17.0 2.6 1.6 9.2 0.0 3.0 3 1 0 3 3 2 1 Putative NAD(P)-binding XdhC_C PF13478.6 gi|89255709|ref|YP_513070.1| - 0.0069 16.9 0.0 0.69 10.4 0.0 2.4 2 0 0 2 2 2 1 XdhC Rossmann domain 2-Hacid_dh_C PF02826.19 gi|89255709|ref|YP_513070.1| - 0.011 15.1 0.6 3.9 6.8 0.0 2.4 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain K_oxygenase PF13434.6 gi|89255709|ref|YP_513070.1| - 0.034 13.3 1.8 0.034 13.3 0.0 1.8 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) Thi4 PF01946.17 gi|89255709|ref|YP_513070.1| - 0.072 12.3 7.9 0.81 8.9 3.6 3.1 1 1 1 2 2 2 0 Thi4 family 3HCDH_N PF02737.18 gi|89255709|ref|YP_513070.1| - 0.14 12.0 7.4 0.28 11.0 0.0 2.6 2 1 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ANAPC4_WD40 PF12894.7 gi|89255709|ref|YP_513070.1| - 0.16 12.3 0.1 0.38 11.1 0.1 1.6 1 0 0 1 1 1 0 Anaphase-promoting complex subunit 4 WD40 domain FAD_binding_3 PF01494.19 gi|89255709|ref|YP_513070.1| - 0.56 9.4 8.6 1.3 8.1 0.3 2.7 3 0 0 3 3 3 0 FAD binding domain TrkA_N PF02254.18 gi|89255709|ref|YP_513070.1| - 4.8 7.5 7.7 12 6.1 0.0 3.6 3 1 1 4 4 4 0 TrkA-N domain CDP-OH_P_transf PF01066.21 gi|89255710|ref|YP_513071.1| - 4.6e-13 49.7 3.4 4.6e-13 49.7 3.4 3.3 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase AA_permease_2 PF13520.6 gi|89255712|ref|YP_513073.1| - 4.1e-14 52.3 24.0 4.5e-14 52.1 24.0 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|89255712|ref|YP_513073.1| - 9.5e-13 47.5 21.9 1.1e-12 47.4 21.9 1.1 1 0 0 1 1 1 1 Amino acid permease DUF4006 PF13179.6 gi|89255712|ref|YP_513073.1| - 0.00041 20.2 3.1 0.057 13.3 0.0 2.7 2 0 0 2 2 2 1 Family of unknown function (DUF4006) DnaJ_C PF01556.18 gi|89255713|ref|YP_513074.1| - 4.5e-31 107.9 0.2 6.3e-31 107.5 0.2 1.2 1 0 0 1 1 1 1 DnaJ C terminal domain DnaJ PF00226.31 gi|89255713|ref|YP_513074.1| - 1.2e-25 89.4 4.0 1.2e-25 89.4 4.0 1.7 2 0 0 2 2 2 1 DnaJ domain EamA PF00892.20 gi|89255714|ref|YP_513075.1| - 6.9e-27 94.3 36.2 2.9e-14 53.4 18.3 2.1 2 0 0 2 2 2 2 EamA-like transporter family Polysacc_synt_C PF14667.6 gi|89255714|ref|YP_513075.1| - 0.013 15.6 10.9 0.013 15.6 10.9 2.9 2 1 1 3 3 3 0 Polysaccharide biosynthesis C-terminal domain TMEM234 PF10639.9 gi|89255714|ref|YP_513075.1| - 0.015 15.3 8.3 0.65 10.0 0.1 3.1 2 1 0 2 2 2 0 Putative transmembrane family 234 Lactamase_B_3 PF13483.6 gi|89255714|ref|YP_513075.1| - 0.028 14.3 0.0 0.047 13.6 0.0 1.3 1 0 0 1 1 1 0 Beta-lactamase superfamily domain FtsL PF04999.13 gi|89255714|ref|YP_513075.1| - 1.1 9.3 0.0 1.1 9.3 0.0 3.2 3 1 1 4 4 4 0 Cell division protein FtsL Popeye PF04831.13 gi|89255714|ref|YP_513075.1| - 3.2 7.9 6.0 0.45 10.7 0.6 2.4 2 1 0 2 2 2 0 Popeye protein conserved region Trp_Tyr_perm PF03222.13 gi|89255715|ref|YP_513076.1| - 1e-76 258.5 39.1 1.3e-76 258.3 39.1 1.0 1 0 0 1 1 1 1 Tryptophan/tyrosine permease family Aa_trans PF01490.18 gi|89255715|ref|YP_513076.1| - 1.9e-06 26.8 23.8 1.9e-06 26.8 23.8 2.3 1 1 1 2 2 2 1 Transmembrane amino acid transporter protein PI3Ka PF00613.20 gi|89255716|ref|YP_513077.1| - 0.00034 20.1 1.5 0.00058 19.3 1.5 1.5 1 1 0 1 1 1 1 Phosphoinositide 3-kinase family, accessory domain (PIK domain) DUF2433 PF10360.9 gi|89255716|ref|YP_513077.1| - 0.1 12.7 1.5 0.74 9.9 0.4 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2433) HD_4 PF13328.6 gi|89255717|ref|YP_513078.1| - 1.2e-36 125.9 0.0 2.2e-36 124.9 0.0 1.4 1 0 0 1 1 1 1 HD domain RelA_SpoT PF04607.17 gi|89255717|ref|YP_513078.1| - 4.8e-35 120.4 0.7 1.4e-34 118.9 0.7 1.9 1 0 0 1 1 1 1 Region found in RelA / SpoT proteins TGS PF02824.21 gi|89255717|ref|YP_513078.1| - 1.3e-18 66.8 0.0 2.6e-18 65.8 0.0 1.6 1 0 0 1 1 1 1 TGS domain ThiS PF02597.20 gi|89255717|ref|YP_513078.1| - 0.00018 22.1 0.0 0.00082 20.0 0.0 2.1 1 0 0 1 1 1 1 ThiS family DUF5398 PF17376.2 gi|89255717|ref|YP_513078.1| - 0.19 12.4 2.8 0.56 10.9 0.2 2.9 2 0 0 2 2 2 0 Family of unknown function (DUF5398) DUF4124 PF13511.6 gi|89255718|ref|YP_513079.1| - 2e-07 31.2 0.0 3.8e-07 30.3 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4124) BiPBP_C PF06832.12 gi|89255718|ref|YP_513079.1| - 0.0026 17.7 0.0 0.0077 16.3 0.0 1.8 2 0 0 2 2 2 1 Penicillin-Binding Protein C-terminus Family Big_7 PF17957.1 gi|89255718|ref|YP_513079.1| - 0.033 15.0 2.6 4.4 8.1 0.5 2.6 1 1 1 2 2 2 0 Bacterial Ig domain DUF4124 PF13511.6 gi|89255719|ref|YP_513080.1| - 0.0028 18.0 0.4 0.0051 17.1 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF4124) DPPIV_N PF00930.21 gi|89255719|ref|YP_513080.1| - 0.049 12.4 0.5 0.067 11.9 0.5 1.3 1 0 0 1 1 1 0 Dipeptidyl peptidase IV (DPP IV) N-terminal region NMN_transporter PF04973.12 gi|89255720|ref|YP_513081.1| - 0.075 13.0 34.8 0.4 10.6 35.1 1.9 1 1 0 1 1 1 0 Nicotinamide mononucleotide transporter SAM_MT PF04445.13 gi|89255721|ref|YP_513082.1| - 9.8e-50 169.1 0.0 1.1e-49 168.9 0.0 1.0 1 0 0 1 1 1 1 Putative SAM-dependent methyltransferase RrnaAD PF00398.20 gi|89255721|ref|YP_513082.1| - 0.0029 16.7 0.1 0.0044 16.1 0.1 1.3 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Cons_hypoth95 PF03602.15 gi|89255721|ref|YP_513082.1| - 0.0073 16.0 0.0 0.012 15.2 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_25 PF13649.6 gi|89255721|ref|YP_513082.1| - 0.084 13.6 0.0 0.19 12.5 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_24 PF13578.6 gi|89255721|ref|YP_513082.1| - 0.098 13.7 0.0 0.16 13.0 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Phage_integrase PF00589.22 gi|89255722|ref|YP_513083.1| - 4.2e-40 137.4 0.4 6.7e-40 136.7 0.1 1.5 2 0 0 2 2 2 1 Phage integrase family Phage_int_SAM_1 PF02899.17 gi|89255722|ref|YP_513083.1| - 1.6e-19 69.9 2.7 4.8e-18 65.2 0.4 2.4 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 gi|89255722|ref|YP_513083.1| - 1.6e-08 34.9 1.7 2.7e-08 34.1 0.5 2.0 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_2 PF12834.7 gi|89255722|ref|YP_513083.1| - 0.00027 21.5 1.7 0.0067 17.1 0.2 2.5 2 1 1 3 3 3 1 Phage integrase, N-terminal Phage_int_SAM_5 PF13102.6 gi|89255722|ref|YP_513083.1| - 0.027 14.8 3.1 2.3 8.6 0.8 3.2 2 1 0 2 2 2 0 Phage integrase SAM-like domain DUF2063 PF09836.9 gi|89255722|ref|YP_513083.1| - 0.054 13.7 0.1 0.33 11.2 0.0 2.1 2 0 0 2 2 2 0 Putative DNA-binding domain Mga PF05043.13 gi|89255722|ref|YP_513083.1| - 0.85 10.2 4.7 17 6.1 0.0 3.6 3 1 0 3 3 3 0 Mga helix-turn-helix domain Trp_Tyr_perm PF03222.13 gi|89255723|ref|YP_513084.1| - 2.3e-79 267.3 43.2 2.8e-79 267.0 43.2 1.0 1 0 0 1 1 1 1 Tryptophan/tyrosine permease family Aa_trans PF01490.18 gi|89255723|ref|YP_513084.1| - 4.7e-16 58.5 27.1 4.7e-16 58.5 27.1 2.7 2 2 0 2 2 2 1 Transmembrane amino acid transporter protein AA_permease PF00324.21 gi|89255723|ref|YP_513084.1| - 7.5e-06 24.8 40.5 7.5e-06 24.8 40.5 2.7 2 1 0 2 2 2 1 Amino acid permease Spore_permease PF03845.13 gi|89255723|ref|YP_513084.1| - 4.4e-05 22.5 31.0 4.4e-05 22.5 31.0 2.3 2 1 0 2 2 2 1 Spore germination protein AA_permease_2 PF13520.6 gi|89255723|ref|YP_513084.1| - 8.7e-05 21.5 56.5 0.0024 16.8 56.5 2.1 1 1 0 1 1 1 1 Amino acid permease SecB PF02556.14 gi|89255724|ref|YP_513085.1| - 1.9e-48 164.0 0.6 2.4e-48 163.6 0.6 1.0 1 0 0 1 1 1 1 Preprotein translocase subunit SecB MutS_V PF00488.21 gi|89255725|ref|YP_513086.1| - 4.4e-79 264.9 0.6 8.2e-79 264.0 0.6 1.5 1 0 0 1 1 1 1 MutS domain V MutS_I PF01624.20 gi|89255725|ref|YP_513086.1| - 6.1e-43 145.7 0.1 2.5e-42 143.7 0.0 2.1 2 0 0 2 2 2 1 MutS domain I MutS_III PF05192.18 gi|89255725|ref|YP_513086.1| - 7.1e-33 114.4 2.4 7.1e-33 114.4 2.4 2.3 3 0 0 3 3 3 1 MutS domain III MutS_IV PF05190.18 gi|89255725|ref|YP_513086.1| - 4.7e-27 94.2 4.1 4.7e-27 94.2 4.1 2.8 4 0 0 4 4 4 1 MutS family domain IV MutS_II PF05188.17 gi|89255725|ref|YP_513086.1| - 1.1e-06 28.9 0.2 1.1e-06 28.9 0.2 2.4 3 0 0 3 3 3 1 MutS domain II AAA_27 PF13514.6 gi|89255725|ref|YP_513086.1| - 0.0023 17.6 0.0 0.0061 16.2 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|89255725|ref|YP_513086.1| - 0.013 15.6 1.0 0.11 12.5 0.0 3.2 2 1 1 3 3 3 0 AAA domain Imm70 PF15601.6 gi|89255725|ref|YP_513086.1| - 0.055 13.0 0.1 1.7 8.2 0.1 3.0 2 0 0 2 2 2 0 Immunity protein 70 HycI PF01750.18 gi|89255725|ref|YP_513086.1| - 0.12 12.2 0.1 0.55 10.1 0.0 2.1 2 0 0 2 2 2 0 Hydrogenase maturation protease ACCA PF03255.14 gi|89255726|ref|YP_513087.1| - 2.6e-59 199.2 0.6 5e-59 198.3 0.0 1.7 2 0 0 2 2 2 1 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit Carboxyl_trans PF01039.22 gi|89255726|ref|YP_513087.1| - 8.7e-18 64.2 0.0 9.8e-18 64.0 0.0 1.1 1 0 0 1 1 1 1 Carboxyl transferase domain DUF1351 PF07083.11 gi|89255726|ref|YP_513087.1| - 0.039 13.7 0.7 0.083 12.7 0.7 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1351) N_methyl PF07963.12 gi|89255727|ref|YP_513088.1| - 0.092 12.3 1.6 0.16 11.6 1.6 1.4 1 0 0 1 1 1 0 Prokaryotic N-terminal methylation motif N_methyl PF07963.12 gi|89255728|ref|YP_513089.1| - 1e-08 34.4 0.7 2.1e-08 33.3 0.7 1.6 1 0 0 1 1 1 1 Prokaryotic N-terminal methylation motif RP-C_C PF11800.8 gi|89255729|ref|YP_513090.1| - 8.5 6.4 6.8 1.1 9.3 2.8 1.5 2 0 0 2 2 2 0 Replication protein C C-terminal region SIS_2 PF13580.6 gi|89255730|ref|YP_513091.1| - 2e-10 40.8 0.5 5.9e-10 39.3 0.5 1.8 1 1 0 1 1 1 1 SIS domain SIS PF01380.22 gi|89255730|ref|YP_513091.1| - 2.5e-09 37.1 2.8 6.2e-08 32.6 0.1 2.4 2 0 0 2 2 2 2 SIS domain Zeta_toxin PF06414.12 gi|89255732|ref|YP_513093.1| - 5.8e-13 48.6 0.0 7.2e-13 48.3 0.0 1.1 1 0 0 1 1 1 1 Zeta toxin AAA_16 PF13191.6 gi|89255732|ref|YP_513093.1| - 4.4e-05 23.9 0.0 5.4e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|89255732|ref|YP_513093.1| - 0.00027 20.9 0.0 0.00031 20.7 0.0 1.2 1 0 0 1 1 1 1 RsgA GTPase ABC_tran PF00005.27 gi|89255732|ref|YP_513093.1| - 0.00094 19.7 0.0 0.0012 19.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA PF00004.29 gi|89255732|ref|YP_513093.1| - 0.0021 18.5 0.0 0.0029 18.0 0.0 1.2 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activ_2 PF14532.6 gi|89255732|ref|YP_513093.1| - 0.0033 17.6 0.0 0.005 16.9 0.0 1.3 1 0 0 1 1 1 1 Sigma-54 interaction domain Torsin PF06309.11 gi|89255732|ref|YP_513093.1| - 0.0045 17.1 0.0 0.0053 16.8 0.0 1.2 1 0 0 1 1 1 1 Torsin DUF815 PF05673.13 gi|89255732|ref|YP_513093.1| - 0.0058 15.8 0.0 0.0062 15.7 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_18 PF13238.6 gi|89255732|ref|YP_513093.1| - 0.0074 16.8 0.0 0.011 16.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_PrkA PF08298.11 gi|89255732|ref|YP_513093.1| - 0.0076 15.2 0.0 0.0089 15.0 0.0 1.1 1 0 0 1 1 1 1 PrkA AAA domain Sigma54_activat PF00158.26 gi|89255732|ref|YP_513093.1| - 0.0083 15.8 0.0 0.011 15.4 0.0 1.2 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_7 PF12775.7 gi|89255732|ref|YP_513093.1| - 0.012 15.2 0.0 0.017 14.6 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region RuvB_N PF05496.12 gi|89255732|ref|YP_513093.1| - 0.016 15.0 0.0 0.022 14.5 0.0 1.2 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain AAA_33 PF13671.6 gi|89255732|ref|YP_513093.1| - 0.024 14.8 0.0 0.029 14.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|89255732|ref|YP_513093.1| - 0.026 14.8 0.0 0.04 14.2 0.0 1.5 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|89255732|ref|YP_513093.1| - 0.03 14.4 0.0 0.041 14.0 0.0 1.3 1 0 0 1 1 1 0 50S ribosome-binding GTPase CPT PF07931.12 gi|89255732|ref|YP_513093.1| - 0.033 14.0 0.0 0.043 13.7 0.0 1.2 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein AAA_5 PF07728.14 gi|89255732|ref|YP_513093.1| - 0.041 13.9 0.0 0.062 13.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_30 PF13604.6 gi|89255732|ref|YP_513093.1| - 0.041 13.6 0.0 0.053 13.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain Gtr1_RagA PF04670.12 gi|89255732|ref|YP_513093.1| - 0.044 13.1 0.0 0.079 12.3 0.0 1.4 1 0 0 1 1 1 0 Gtr1/RagA G protein conserved region SMC_N PF02463.19 gi|89255732|ref|YP_513093.1| - 0.05 13.0 0.2 0.063 12.7 0.2 1.1 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|89255732|ref|YP_513093.1| - 0.08 12.7 0.1 0.14 12.0 0.1 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain KAP_NTPase PF07693.14 gi|89255732|ref|YP_513093.1| - 0.081 12.1 0.0 0.089 12.0 0.0 1.1 1 0 0 1 1 1 0 KAP family P-loop domain AAA_14 PF13173.6 gi|89255732|ref|YP_513093.1| - 0.088 12.8 0.0 0.13 12.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain Ploopntkinase3 PF18751.1 gi|89255732|ref|YP_513093.1| - 0.11 12.4 0.0 0.15 12.0 0.0 1.2 1 0 0 1 1 1 0 P-loop Nucleotide Kinase3 DDE_Tnp_1_2 PF13586.6 gi|89255733|ref|YP_513094.1| - 4.5e-14 52.6 0.1 8.1e-14 51.8 0.1 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|89255733|ref|YP_513094.1| - 3.6e-12 46.4 2.1 3.4e-11 43.2 2.1 1.9 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 gi|89255733|ref|YP_513094.1| - 6e-08 32.9 0.0 8.1e-08 32.4 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.6 gi|89255733|ref|YP_513094.1| - 0.00016 21.4 0.2 0.00021 21.0 0.2 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease DUF4096 PF13340.6 gi|89255733|ref|YP_513094.1| - 0.0052 17.0 0.0 0.01 16.0 0.0 1.5 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) Zeta_toxin PF06414.12 gi|89255734|ref|YP_513095.1| - 8e-09 35.1 0.1 1.1e-08 34.6 0.1 1.2 1 0 0 1 1 1 1 Zeta toxin Na_H_Exchanger PF00999.21 gi|89255735|ref|YP_513096.1| - 1e-53 182.5 37.6 1.2e-53 182.3 37.6 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family tRNA-synt_1b PF00579.25 gi|89255737|ref|YP_513098.1| - 2.9e-60 204.1 0.3 3.7e-60 203.7 0.3 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_1f PF01921.18 gi|89255737|ref|YP_513098.1| - 0.00047 19.2 0.0 0.11 11.4 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (K) DUF4562 PF15123.6 gi|89255737|ref|YP_513098.1| - 0.0063 16.4 0.1 0.13 12.2 0.0 2.7 3 0 0 3 3 3 1 Domain of unknown function (DUF4562) RRF PF01765.19 gi|89255737|ref|YP_513098.1| - 0.31 11.0 3.9 1.5 8.8 0.5 2.4 2 0 0 2 2 2 0 Ribosome recycling factor CoaE PF01121.20 gi|89255738|ref|YP_513099.1| - 9.3e-46 155.7 0.8 1.1e-45 155.5 0.8 1.0 1 0 0 1 1 1 1 Dephospho-CoA kinase AAA_18 PF13238.6 gi|89255738|ref|YP_513099.1| - 1.8e-09 38.3 1.6 4.1e-09 37.1 1.6 1.6 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|89255738|ref|YP_513099.1| - 7.8e-07 29.6 1.4 7.8e-07 29.6 1.4 1.8 2 1 0 2 2 2 1 AAA domain Cytidylate_kin2 PF13189.6 gi|89255738|ref|YP_513099.1| - 1.6e-06 28.4 2.8 2.9e-06 27.5 2.8 1.5 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_33 PF13671.6 gi|89255738|ref|YP_513099.1| - 0.00045 20.4 0.6 0.011 15.9 0.4 2.6 1 1 1 2 2 2 1 AAA domain SKI PF01202.22 gi|89255738|ref|YP_513099.1| - 0.00054 20.1 3.1 0.56 10.3 0.1 2.4 1 1 0 2 2 2 2 Shikimate kinase dNK PF01712.19 gi|89255738|ref|YP_513099.1| - 0.0015 18.4 4.0 0.02 14.8 4.0 2.4 1 1 0 1 1 1 1 Deoxynucleoside kinase Cytidylate_kin PF02224.18 gi|89255738|ref|YP_513099.1| - 0.012 15.4 3.5 0.093 12.5 0.2 2.9 2 1 0 2 2 2 0 Cytidylate kinase AAA_28 PF13521.6 gi|89255738|ref|YP_513099.1| - 0.015 15.6 0.0 0.028 14.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain PRK PF00485.18 gi|89255738|ref|YP_513099.1| - 0.016 15.0 3.7 0.036 13.8 3.7 1.7 1 1 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family ADK PF00406.22 gi|89255738|ref|YP_513099.1| - 0.019 15.0 1.2 0.056 13.5 0.1 2.0 2 0 0 2 2 2 0 Adenylate kinase NAT PF04768.13 gi|89255738|ref|YP_513099.1| - 0.045 13.4 0.4 0.089 12.4 0.2 1.5 1 1 1 2 2 2 0 NAT, N-acetyltransferase, of N-acetylglutamate synthase DNA_pol_D_N PF18018.1 gi|89255738|ref|YP_513099.1| - 0.061 13.4 2.7 0.06 13.5 1.0 1.8 1 1 1 2 2 2 0 DNA polymerase delta subunit OB-fold domain CENP-T_C PF15511.6 gi|89255738|ref|YP_513099.1| - 0.065 13.4 0.2 0.15 12.2 0.2 1.6 1 0 0 1 1 1 0 Centromere kinetochore component CENP-T histone fold Methyltransf_28 PF02636.17 gi|89255739|ref|YP_513100.1| - 2.2e-50 171.7 0.0 3.2e-50 171.2 0.0 1.2 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase TRM13 PF05206.14 gi|89255739|ref|YP_513100.1| - 0.12 11.9 0.1 0.43 10.1 0.0 1.8 2 0 0 2 2 2 0 Methyltransferase TRM13 PDH_E1_M PF17831.1 gi|89255740|ref|YP_513101.1| - 5.3e-104 346.8 0.4 5.3e-104 346.8 0.4 1.6 2 0 0 2 2 2 1 Pyruvate dehydrogenase E1 component middle domain Transketolase_N PF00456.21 gi|89255740|ref|YP_513101.1| - 9.2e-16 57.7 0.0 1.2e-12 47.4 0.0 2.3 2 0 0 2 2 2 2 Transketolase, thiamine diphosphate binding domain Transketolase_C PF02780.20 gi|89255740|ref|YP_513101.1| - 0.00028 20.7 0.0 0.0009 19.1 0.0 1.8 1 0 0 1 1 1 1 Transketolase, C-terminal domain 2-oxoacid_dh PF00198.23 gi|89255741|ref|YP_513102.1| - 5.6e-79 264.9 0.0 9.2e-79 264.2 0.0 1.4 1 0 0 1 1 1 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Biotin_lipoyl PF00364.22 gi|89255741|ref|YP_513102.1| - 7.6e-39 131.4 19.9 3.2e-19 68.5 7.1 2.5 2 0 0 2 2 2 2 Biotin-requiring enzyme E3_binding PF02817.17 gi|89255741|ref|YP_513102.1| - 7e-15 55.1 0.8 2.7e-14 53.2 0.4 2.3 2 0 0 2 2 2 1 e3 binding domain GCV_H PF01597.19 gi|89255741|ref|YP_513102.1| - 1.2e-08 34.9 9.8 1.2e-05 25.1 2.3 2.6 2 0 0 2 2 2 2 Glycine cleavage H-protein Biotin_lipoyl_2 PF13533.6 gi|89255741|ref|YP_513102.1| - 2.7e-07 30.3 15.5 0.00018 21.3 0.1 4.3 2 2 2 4 4 4 2 Biotin-lipoyl like PYNP_C PF07831.13 gi|89255741|ref|YP_513102.1| - 9e-05 22.1 4.0 1.7 8.3 0.0 4.4 4 0 0 4 4 4 1 Pyrimidine nucleoside phosphorylase C-terminal domain NQRA PF05896.11 gi|89255741|ref|YP_513102.1| - 0.00044 19.8 5.7 0.041 13.3 1.9 2.3 1 1 0 2 2 2 2 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) RnfC_N PF13375.6 gi|89255741|ref|YP_513102.1| - 0.00046 20.1 7.9 0.9 9.5 0.2 4.0 2 2 2 4 4 4 2 RnfC Barrel sandwich hybrid domain PTS_EIIA_1 PF00358.20 gi|89255741|ref|YP_513102.1| - 0.00091 19.0 6.1 0.43 10.3 0.2 4.4 3 2 2 5 5 5 2 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 HlyD_3 PF13437.6 gi|89255741|ref|YP_513102.1| - 0.0016 19.1 9.8 0.13 12.9 0.1 3.6 3 1 1 4 4 3 2 HlyD family secretion protein HlyD_D23 PF16576.5 gi|89255741|ref|YP_513102.1| - 0.0016 17.7 5.1 0.074 12.3 0.1 2.8 2 2 1 3 3 3 2 Barrel-sandwich domain of CusB or HlyD membrane-fusion DUF2118 PF09891.9 gi|89255741|ref|YP_513102.1| - 0.088 12.8 3.3 1.2 9.0 0.3 2.8 2 1 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2118) Peptidase_M23 PF01551.22 gi|89255741|ref|YP_513102.1| - 0.26 11.5 2.0 7.6 6.8 0.0 3.1 2 1 0 3 3 3 0 Peptidase family M23 ATP11 PF06644.11 gi|89255741|ref|YP_513102.1| - 1.3 8.7 3.9 0.56 9.9 0.8 1.8 2 0 0 2 2 2 0 ATP11 protein DUF3597 PF12200.8 gi|89255741|ref|YP_513102.1| - 3.1 8.4 8.4 19 5.8 2.4 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF3597) Pyr_redox_2 PF07992.14 gi|89255742|ref|YP_513103.1| - 1.1e-65 221.8 5.0 1.1e-65 221.8 5.0 1.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|89255742|ref|YP_513103.1| - 6.3e-34 116.5 0.4 1.1e-32 112.5 0.1 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|89255742|ref|YP_513103.1| - 2.1e-16 60.2 5.4 7.2e-14 52.1 0.5 2.8 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|89255742|ref|YP_513103.1| - 2.5e-08 33.5 5.2 4.7e-07 29.2 0.6 3.0 2 1 0 2 2 2 1 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|89255742|ref|YP_513103.1| - 3.5e-08 33.2 0.7 3.5e-08 33.2 0.7 1.7 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 gi|89255742|ref|YP_513103.1| - 1e-07 31.5 4.8 9.4e-06 25.1 0.8 2.8 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|89255742|ref|YP_513103.1| - 3.6e-06 26.3 3.3 0.00018 20.7 0.7 2.9 3 0 0 3 3 3 1 FAD binding domain NAD_binding_8 PF13450.6 gi|89255742|ref|YP_513103.1| - 5.9e-06 26.4 9.7 0.00069 19.8 0.4 3.1 3 0 0 3 3 3 2 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.21 gi|89255742|ref|YP_513103.1| - 3.2e-05 23.4 6.7 0.0056 16.0 0.3 3.2 3 1 0 3 3 3 2 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_3 PF01494.19 gi|89255742|ref|YP_513103.1| - 0.0001 21.7 5.8 0.0089 15.3 0.2 2.6 2 1 1 3 3 3 2 FAD binding domain 3HCDH_N PF02737.18 gi|89255742|ref|YP_513103.1| - 0.00021 21.2 4.0 0.017 15.0 0.4 3.0 3 0 0 3 3 3 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Thi4 PF01946.17 gi|89255742|ref|YP_513103.1| - 0.00027 20.3 2.5 0.0029 16.9 0.3 2.4 2 0 0 2 2 2 1 Thi4 family HI0933_like PF03486.14 gi|89255742|ref|YP_513103.1| - 0.0016 17.2 4.4 0.0099 14.6 0.3 2.6 3 0 0 3 3 3 1 HI0933-like protein Lycopene_cycl PF05834.12 gi|89255742|ref|YP_513103.1| - 0.0022 17.1 1.2 1 8.4 0.0 2.6 3 0 0 3 3 3 2 Lycopene cyclase protein 2-Hacid_dh_C PF02826.19 gi|89255742|ref|YP_513103.1| - 0.0088 15.4 0.8 1.2 8.5 0.1 2.5 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|89255742|ref|YP_513103.1| - 0.01 16.3 0.8 0.075 13.5 0.0 2.3 2 0 0 2 2 2 0 Putative NAD(P)-binding XdhC_C PF13478.6 gi|89255742|ref|YP_513103.1| - 0.017 15.6 0.1 0.39 11.2 0.0 2.5 2 0 0 2 2 2 0 XdhC Rossmann domain TrkA_N PF02254.18 gi|89255742|ref|YP_513103.1| - 0.026 14.8 1.0 0.08 13.2 0.2 2.2 2 0 0 2 2 2 0 TrkA-N domain DAO PF01266.24 gi|89255742|ref|YP_513103.1| - 0.034 13.8 8.2 1 8.9 0.3 2.8 3 0 0 3 3 3 0 FAD dependent oxidoreductase UDPG_MGDP_dh_N PF03721.14 gi|89255742|ref|YP_513103.1| - 0.12 12.0 0.9 0.56 9.8 0.2 2.2 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Trp_halogenase PF04820.14 gi|89255742|ref|YP_513103.1| - 0.13 11.1 1.2 8 5.2 0.1 2.3 2 0 0 2 2 2 0 Tryptophan halogenase DUF956 PF06115.11 gi|89255743|ref|YP_513104.1| - 0.053 13.2 0.0 0.055 13.2 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF956) DDE_Tnp_IS1595 PF12762.7 gi|89255743|ref|YP_513104.1| - 0.13 12.2 0.2 0.19 11.8 0.1 1.4 2 0 0 2 2 2 0 ISXO2-like transposase domain DDE_3 PF13358.6 gi|89257203|ref|YP_513106.1| - 1.4e-29 102.7 0.1 3.3e-29 101.5 0.0 1.6 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_40 PF14493.6 gi|89257203|ref|YP_513106.1| - 0.001 19.5 0.0 0.07 13.6 0.0 2.9 3 1 0 3 3 3 1 Helix-turn-helix domain HTH_Tnp_IS630 PF01710.16 gi|89257203|ref|YP_513106.1| - 0.003 17.6 0.9 0.0095 16.0 0.2 2.3 2 1 0 2 2 2 1 Transposase HTH_29 PF13551.6 gi|89257203|ref|YP_513106.1| - 0.0033 17.4 0.0 0.0082 16.2 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn helix HTH_28 PF13518.6 gi|89257203|ref|YP_513106.1| - 0.027 14.6 0.0 0.074 13.2 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain CENP-B_N PF04218.13 gi|89257203|ref|YP_513106.1| - 0.097 12.3 0.0 0.99 9.1 0.0 2.5 3 0 0 3 3 3 0 CENP-B N-terminal DNA-binding domain HTH_23 PF13384.6 gi|89257203|ref|YP_513106.1| - 0.12 12.2 0.0 0.35 10.7 0.0 1.9 1 0 0 1 1 1 0 Homeodomain-like domain rve PF00665.26 gi|89257203|ref|YP_513106.1| - 0.15 12.2 0.0 0.28 11.4 0.0 1.4 1 0 0 1 1 1 0 Integrase core domain NUDIX PF00293.28 gi|89255745|ref|YP_513107.1| - 3.9e-14 52.8 0.0 5.3e-14 52.4 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain Nudix_N PF12535.8 gi|89255745|ref|YP_513107.1| - 9.5e-09 34.7 0.0 1.9e-08 33.8 0.0 1.5 1 0 0 1 1 1 1 Hydrolase of X-linked nucleoside diphosphate N terminal DUF2482 PF10655.9 gi|89255745|ref|YP_513107.1| - 0.017 15.6 0.2 0.044 14.3 0.0 1.8 2 0 0 2 2 2 0 Hypothetical protein of unknown function (DUF2482) ArsC PF03960.15 gi|89255746|ref|YP_513108.1| - 7.2e-11 41.9 0.0 1e-10 41.5 0.0 1.4 1 1 0 1 1 1 1 ArsC family FRD2 PF03197.13 gi|89255746|ref|YP_513108.1| - 0.0021 18.3 0.0 0.0031 17.8 0.0 1.2 1 0 0 1 1 1 1 Bacteriophage FRD2 protein Scaffolding_pro PF11418.8 gi|89255746|ref|YP_513108.1| - 0.023 15.2 0.1 0.033 14.7 0.1 1.3 1 1 0 1 1 1 0 Phi29 scaffolding protein Glutaredoxin PF00462.24 gi|89255746|ref|YP_513108.1| - 0.08 13.2 0.0 0.12 12.6 0.0 1.4 1 0 0 1 1 1 0 Glutaredoxin DUF948 PF06103.11 gi|89255747|ref|YP_513109.1| - 0.043 14.1 2.5 0.27 11.5 2.5 1.9 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF948) Peptidase_S49_N PF08496.10 gi|89255747|ref|YP_513109.1| - 0.052 13.6 4.6 0.06 13.4 4.6 1.2 1 0 0 1 1 1 0 Peptidase family S49 N-terminal IL13 PF03487.13 gi|89255747|ref|YP_513109.1| - 0.11 12.3 1.8 0.16 11.8 1.8 1.3 1 1 0 1 1 1 0 Interleukin-13 Peptidase_M61 PF05299.12 gi|89255747|ref|YP_513109.1| - 0.11 12.9 0.7 0.17 12.3 0.5 1.4 1 1 0 1 1 1 0 M61 glycyl aminopeptidase O-antigen_lig PF13425.6 gi|89255747|ref|YP_513109.1| - 0.14 10.9 2.0 0.15 10.8 2.0 1.0 1 0 0 1 1 1 0 O-antigen ligase like membrane protein WBP-1 PF11669.8 gi|89255747|ref|YP_513109.1| - 0.2 12.3 0.4 0.35 11.5 0.2 1.5 1 1 1 2 2 2 0 WW domain-binding protein 1 V_ATPase_I PF01496.19 gi|89255747|ref|YP_513109.1| - 0.21 9.5 4.2 0.24 9.3 4.2 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family SID-1_RNA_chan PF13965.6 gi|89255747|ref|YP_513109.1| - 0.25 9.7 4.1 0.29 9.5 4.1 1.0 1 0 0 1 1 1 0 dsRNA-gated channel SID-1 DUF4574 PF15141.6 gi|89255747|ref|YP_513109.1| - 0.45 10.4 4.2 0.14 12.1 1.0 1.7 1 1 1 2 2 2 0 Ubiquinol-cytochrome-c reductase complex assembly factor 3 DUF3450 PF11932.8 gi|89255747|ref|YP_513109.1| - 0.92 8.8 14.8 1.1 8.5 14.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) CLN3 PF02487.17 gi|89255747|ref|YP_513109.1| - 0.95 8.4 3.4 1 8.3 3.4 1.0 1 0 0 1 1 1 0 CLN3 protein FUSC PF04632.12 gi|89255747|ref|YP_513109.1| - 2.1 6.8 4.1 2.2 6.7 4.1 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family DUF2681 PF10883.8 gi|89255747|ref|YP_513109.1| - 3.2 8.2 12.7 0.77 10.2 3.4 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2681) Presenilin PF01080.17 gi|89255747|ref|YP_513109.1| - 3.9 6.1 6.5 4.2 6.0 6.5 1.1 1 0 0 1 1 1 0 Presenilin IMD PF08397.11 gi|89255748|ref|YP_513110.1| - 0.0041 16.5 0.0 0.0044 16.4 0.0 1.0 1 0 0 1 1 1 1 IRSp53/MIM homology domain Xan_ur_permease PF00860.20 gi|89255749|ref|YP_513111.1| - 6.2e-37 127.2 41.4 6.2e-37 127.2 41.4 1.5 2 0 0 2 2 2 1 Permease family DUF5464 PF17552.2 gi|89255749|ref|YP_513111.1| - 0.014 15.6 1.1 0.28 11.5 0.1 3.2 3 0 0 3 3 3 0 Family of unknown function (DUF5464) Aminotran_1_2 PF00155.21 gi|89255750|ref|YP_513112.1| - 3.6e-22 79.0 0.0 6.3e-22 78.2 0.0 1.3 1 1 0 1 1 1 1 Aminotransferase class I and II OmpA PF00691.20 gi|89255751|ref|YP_513113.1| - 3.8e-15 56.1 0.1 8.8e-15 54.9 0.1 1.6 1 0 0 1 1 1 1 OmpA family DUF4223 PF13978.6 gi|89255751|ref|YP_513113.1| - 0.011 15.6 0.1 0.029 14.3 0.1 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF4223) FKBP_C PF00254.28 gi|89255752|ref|YP_513114.1| - 2.4e-10 40.6 0.2 4.7e-10 39.7 0.1 1.4 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase Zincin_1 PF06262.11 gi|89255752|ref|YP_513114.1| - 0.018 15.1 0.0 0.027 14.6 0.0 1.3 1 0 0 1 1 1 0 Zincin-like metallopeptidase DUF2187 PF09953.9 gi|89255752|ref|YP_513114.1| - 0.07 13.1 0.2 0.23 11.5 0.1 1.9 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2187) LYTB PF02401.18 gi|89255753|ref|YP_513115.1| - 5.7e-87 291.3 1.1 6.6e-87 291.1 1.1 1.0 1 0 0 1 1 1 1 LytB protein Ala_racemase_C PF00842.21 gi|89255753|ref|YP_513115.1| - 0.1 12.4 0.0 0.26 11.1 0.0 1.7 1 0 0 1 1 1 0 Alanine racemase, C-terminal domain CM_1 PF07736.11 gi|89255754|ref|YP_513116.1| - 2e-44 150.7 0.1 2.3e-44 150.6 0.1 1.0 1 0 0 1 1 1 1 Chorismate mutase type I P22_CoatProtein PF11651.8 gi|89255754|ref|YP_513116.1| - 0.0094 14.6 0.0 0.011 14.4 0.0 1.1 1 0 0 1 1 1 1 P22 coat protein - gene protein 5 DUF2106 PF09879.9 gi|89255754|ref|YP_513116.1| - 0.068 12.7 0.0 0.081 12.5 0.0 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2106) RsbU_N PF08673.10 gi|89255754|ref|YP_513116.1| - 0.11 12.6 0.2 0.36 11.0 0.2 1.8 1 1 0 1 1 1 0 Phosphoserine phosphatase RsbU, N-terminal domain CDP-OH_P_transf PF01066.21 gi|89255755|ref|YP_513117.1| - 1.8e-12 47.9 2.5 1.8e-12 47.9 2.5 2.8 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase DUF2434 PF10361.9 gi|89255755|ref|YP_513117.1| - 0.077 12.0 0.8 0.13 11.2 0.2 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF2434) MotA_ExbB PF01618.16 gi|89255757|ref|YP_513119.1| - 2.9e-36 124.0 0.2 5.2e-36 123.2 0.2 1.4 1 0 0 1 1 1 1 MotA/TolQ/ExbB proton channel family ExbD PF02472.16 gi|89255758|ref|YP_513120.1| - 1.8e-29 102.5 0.3 2.1e-29 102.3 0.3 1.0 1 0 0 1 1 1 1 Biopolymer transport protein ExbD/TolR DUF2149 PF09919.9 gi|89255758|ref|YP_513120.1| - 0.045 14.0 0.3 0.071 13.4 0.1 1.5 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2149) DUF1373 PF07117.11 gi|89255758|ref|YP_513120.1| - 0.049 13.6 0.0 0.056 13.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1373) Borrelia_P83 PF05262.11 gi|89255759|ref|YP_513121.1| - 0.0017 17.0 36.5 0.0019 16.8 36.5 1.1 1 0 0 1 1 1 1 Borrelia P83/100 protein TonB_2 PF13103.6 gi|89255759|ref|YP_513121.1| - 0.0028 17.9 0.0 0.012 15.8 0.0 2.2 1 1 0 1 1 1 1 TonB C terminal TFIIA PF03153.13 gi|89255759|ref|YP_513121.1| - 0.026 14.5 29.1 0.031 14.3 29.1 1.1 1 0 0 1 1 1 0 Transcription factor IIA, alpha/beta subunit SWI-SNF_Ssr4 PF08549.10 gi|89255759|ref|YP_513121.1| - 0.18 10.4 22.1 0.23 10.0 22.1 1.0 1 0 0 1 1 1 0 Fungal domain of unknown function (DUF1750) CDC45 PF02724.14 gi|89255759|ref|YP_513121.1| - 0.68 8.2 22.8 0.89 7.8 22.8 1.3 1 0 0 1 1 1 0 CDC45-like protein GREB1 PF15782.5 gi|89255759|ref|YP_513121.1| - 5.1 4.1 23.2 6.1 3.8 23.2 1.0 1 0 0 1 1 1 0 Gene regulated by oestrogen in breast cancer Hid1 PF12722.7 gi|89255759|ref|YP_513121.1| - 6.2 4.8 27.1 8.1 4.4 27.1 1.1 1 0 0 1 1 1 0 High-temperature-induced dauer-formation protein DUF4175 PF13779.6 gi|89255759|ref|YP_513121.1| - 7.2 4.4 41.7 9 4.1 41.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4175) Asp-B-Hydro_N PF05279.11 gi|89255759|ref|YP_513121.1| - 8.3 6.4 36.0 11 6.0 36.0 1.2 1 0 0 1 1 1 0 Aspartyl beta-hydroxylase N-terminal region PD40 PF07676.12 gi|89255760|ref|YP_513122.1| - 9.1e-29 98.8 21.7 2.6e-11 43.1 0.2 6.4 7 0 0 7 7 7 5 WD40-like Beta Propeller Repeat DPPIV_N PF00930.21 gi|89255760|ref|YP_513122.1| - 2.6e-09 36.3 3.6 0.00086 18.2 0.0 4.8 2 1 2 4 4 4 4 Dipeptidyl peptidase IV (DPP IV) N-terminal region Pectate_lyase22 PF14583.6 gi|89255760|ref|YP_513122.1| - 1.6e-06 27.1 0.6 0.0038 15.9 0.0 3.8 3 1 1 4 4 4 2 Oligogalacturonate lyase TolB_N PF04052.13 gi|89255760|ref|YP_513122.1| - 0.00013 22.1 0.5 0.00037 20.6 0.5 1.8 1 0 0 1 1 1 1 TolB amino-terminal domain Peptidase_S9_N PF02897.15 gi|89255760|ref|YP_513122.1| - 0.00081 18.3 0.0 0.021 13.6 0.0 2.2 1 1 1 2 2 2 1 Prolyl oligopeptidase, N-terminal beta-propeller domain OmpA PF00691.20 gi|89255762|ref|YP_513124.1| - 5.6e-18 65.1 0.0 2.1e-17 63.3 0.0 1.8 2 0 0 2 2 2 1 OmpA family LPAM_1 PF08139.12 gi|89255762|ref|YP_513124.1| - 0.11 13.0 0.7 0.24 12.0 0.7 1.6 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site Acetyltransf_1 PF00583.25 gi|89255763|ref|YP_513125.1| - 3.9e-14 52.9 0.0 4.8e-14 52.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|89255763|ref|YP_513125.1| - 5.6e-12 45.7 0.0 5.6e-12 45.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|89255763|ref|YP_513125.1| - 1.2e-08 35.3 0.2 1.3e-08 35.1 0.2 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|89255763|ref|YP_513125.1| - 2.4e-08 34.3 0.0 3e-08 34.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|89255763|ref|YP_513125.1| - 1.1e-06 29.4 0.0 1.3e-06 29.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|89255763|ref|YP_513125.1| - 4.7e-06 26.5 0.0 6.6e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_CG PF14542.6 gi|89255763|ref|YP_513125.1| - 0.0016 18.5 0.0 0.0023 18.0 0.0 1.2 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Pox_A28 PF04584.14 gi|89255763|ref|YP_513125.1| - 0.097 12.9 0.0 0.18 12.0 0.0 1.5 1 1 0 1 1 1 0 Poxvirus A28 family DDE_3 PF13358.6 gi|89255764|ref|YP_513126.1| - 9.9e-30 103.2 0.2 3.2e-29 101.6 0.0 1.8 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.16 gi|89255764|ref|YP_513126.1| - 0.0029 17.6 1.5 0.0084 16.2 0.6 2.3 2 1 0 2 2 2 1 Transposase HTH_29 PF13551.6 gi|89255764|ref|YP_513126.1| - 0.0033 17.4 0.0 0.008 16.2 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn helix HTH_40 PF14493.6 gi|89255764|ref|YP_513126.1| - 0.011 16.2 0.1 0.069 13.6 0.0 2.3 3 1 0 3 3 3 0 Helix-turn-helix domain HTH_28 PF13518.6 gi|89255764|ref|YP_513126.1| - 0.026 14.6 0.0 0.073 13.2 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain CENP-B_N PF04218.13 gi|89255764|ref|YP_513126.1| - 0.097 12.3 0.0 0.98 9.1 0.0 2.5 3 0 0 3 3 3 0 CENP-B N-terminal DNA-binding domain HTH_23 PF13384.6 gi|89255764|ref|YP_513126.1| - 0.12 12.2 0.0 0.34 10.8 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain rve PF00665.26 gi|89255764|ref|YP_513126.1| - 0.15 12.3 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 Integrase core domain DDE_Tnp_ISAZ013 PF07592.11 gi|89255764|ref|YP_513126.1| - 0.17 10.9 0.3 1.1 8.1 0.1 2.0 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain DUF2805 PF10985.8 gi|89255765|ref|YP_513127.1| - 6.5e-21 74.5 0.2 7.5e-21 74.3 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2805) Phage_AlpA PF05930.12 gi|89255765|ref|YP_513127.1| - 0.1 12.4 0.0 0.14 12.0 0.0 1.2 1 0 0 1 1 1 0 Prophage CP4-57 regulatory protein (AlpA) DNA_photolyase PF00875.18 gi|89255766|ref|YP_513128.1| - 7.6e-11 42.3 0.1 1.9e-10 41.0 0.1 1.6 1 1 1 2 2 2 1 DNA photolyase DUF1146 PF06612.11 gi|89255766|ref|YP_513128.1| - 0.09 12.8 0.1 5.7 7.1 0.2 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1146) FAD_binding_7 PF03441.14 gi|89255767|ref|YP_513129.1| - 3.3e-48 163.9 0.7 3.6e-48 163.7 0.7 1.0 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase DPRP PF04244.13 gi|89255768|ref|YP_513130.1| - 1.1e-79 267.4 0.9 1.4e-79 267.1 0.1 1.6 2 0 0 2 2 2 1 Deoxyribodipyrimidine photo-lyase-related protein AHL_synthase PF17327.2 gi|89255768|ref|YP_513130.1| - 0.002 17.2 0.3 0.0033 16.5 0.3 1.3 1 0 0 1 1 1 1 Acyl homoserine lactone synthase DUF2256 PF10013.9 gi|89255769|ref|YP_513131.1| - 1.7e-23 82.4 10.9 1.9e-23 82.3 10.9 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2256) zf-MYND PF01753.18 gi|89255769|ref|YP_513131.1| - 0.0027 17.8 0.3 0.0036 17.4 0.3 1.4 1 1 0 1 1 1 1 MYND finger zf-HIT PF04438.16 gi|89255769|ref|YP_513131.1| - 0.012 15.4 3.5 0.82 9.6 0.1 2.2 2 0 0 2 2 2 0 HIT zinc finger Ecl1 PF12855.7 gi|89255769|ref|YP_513131.1| - 0.058 14.5 0.4 0.061 14.5 0.4 1.1 1 0 0 1 1 1 0 ECL1/2/3 zinc binding proteins DUF2116 PF09889.9 gi|89255769|ref|YP_513131.1| - 0.77 9.8 5.8 8.7 6.4 5.8 2.1 1 1 0 1 1 1 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) SBF PF01758.16 gi|89255770|ref|YP_513132.1| - 2.4e-22 79.6 26.6 2.4e-22 79.6 26.6 1.9 1 1 0 1 1 1 1 Sodium Bile acid symporter family SBF_like PF13593.6 gi|89255770|ref|YP_513132.1| - 5.1e-15 55.6 34.4 6.6e-15 55.2 34.4 1.1 1 0 0 1 1 1 1 SBF-like CPA transporter family (DUF4137) Pam17 PF08566.10 gi|89255770|ref|YP_513132.1| - 0.17 11.7 0.2 0.17 11.7 0.2 2.0 2 0 0 2 2 2 0 Mitochondrial import protein Pam17 PAS_6 PF08348.11 gi|89255771|ref|YP_513133.1| - 4.3e-24 84.6 0.2 6.2e-24 84.1 0.2 1.2 1 0 0 1 1 1 1 YheO-like PAS domain NAAA-beta PF15508.6 gi|89255771|ref|YP_513133.1| - 0.035 14.4 0.3 17 5.8 0.0 3.1 2 1 0 2 2 2 0 beta subunit of N-acylethanolamine-hydrolyzing acid amidase TauE PF01925.19 gi|89255772|ref|YP_513134.1| - 8.9e-24 84.4 14.1 1e-23 84.2 14.1 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE RseC_MucC PF04246.12 gi|89255772|ref|YP_513134.1| - 1.5 8.8 10.7 0.22 11.5 0.9 2.7 2 1 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC DUF423 PF04241.15 gi|89255773|ref|YP_513135.1| - 7.9e-18 64.5 1.6 7.9e-18 64.5 1.6 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF423) DDE_3 PF13358.6 gi|89255774|ref|YP_513136.1| - 9.9e-30 103.2 0.2 3.2e-29 101.6 0.0 1.8 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.16 gi|89255774|ref|YP_513136.1| - 0.0029 17.6 1.5 0.0084 16.2 0.6 2.3 2 1 0 2 2 2 1 Transposase HTH_29 PF13551.6 gi|89255774|ref|YP_513136.1| - 0.0033 17.4 0.0 0.008 16.2 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn helix HTH_40 PF14493.6 gi|89255774|ref|YP_513136.1| - 0.011 16.2 0.1 0.069 13.6 0.0 2.3 3 1 0 3 3 3 0 Helix-turn-helix domain HTH_28 PF13518.6 gi|89255774|ref|YP_513136.1| - 0.026 14.6 0.0 0.073 13.2 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain CENP-B_N PF04218.13 gi|89255774|ref|YP_513136.1| - 0.097 12.3 0.0 0.98 9.1 0.0 2.5 3 0 0 3 3 3 0 CENP-B N-terminal DNA-binding domain HTH_23 PF13384.6 gi|89255774|ref|YP_513136.1| - 0.12 12.2 0.0 0.34 10.8 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain rve PF00665.26 gi|89255774|ref|YP_513136.1| - 0.15 12.3 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 Integrase core domain DDE_Tnp_ISAZ013 PF07592.11 gi|89255774|ref|YP_513136.1| - 0.17 10.9 0.3 1.1 8.1 0.1 2.0 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain DUF393 PF04134.12 gi|89255775|ref|YP_513137.1| - 4.6e-21 76.3 0.1 5.4e-21 76.0 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function, DUF393 UbiA PF01040.18 gi|89255776|ref|YP_513138.1| - 2.1e-56 191.0 27.5 2.6e-56 190.7 27.5 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family Chor_lyase PF04345.13 gi|89255777|ref|YP_513139.1| - 6.5e-16 58.4 0.1 7.8e-16 58.2 0.1 1.0 1 0 0 1 1 1 1 Chorismate lyase DUF98 PF01947.16 gi|89255777|ref|YP_513139.1| - 0.0024 17.8 0.0 0.0032 17.4 0.0 1.2 1 0 0 1 1 1 1 p-hydroxybenzoic acid synthase Peptidase_C37 PF05416.12 gi|89255777|ref|YP_513139.1| - 0.071 11.6 0.0 0.074 11.6 0.0 1.2 1 0 0 1 1 1 0 Southampton virus-type processing peptidase RNase_PH PF01138.21 gi|89255778|ref|YP_513140.1| - 6.2e-26 91.5 0.1 1.2e-25 90.6 0.1 1.4 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|89255778|ref|YP_513140.1| - 7.8e-14 51.5 0.3 1.4e-13 50.7 0.3 1.4 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 DUF3287 PF11690.8 gi|89255779|ref|YP_513141.1| - 0.0041 16.8 0.2 0.0047 16.6 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3287) DUF1043 PF06295.12 gi|89255779|ref|YP_513141.1| - 0.005 16.8 2.6 0.0058 16.6 2.6 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1043) HrpE PF06188.12 gi|89255779|ref|YP_513141.1| - 0.0061 16.4 0.1 0.0067 16.3 0.1 1.1 1 0 0 1 1 1 1 HrpE/YscL/FliH and V-type ATPase subunit E DUF3526 PF12040.8 gi|89255779|ref|YP_513141.1| - 0.036 14.6 0.1 0.044 14.3 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3526) DUF4140 PF13600.6 gi|89255779|ref|YP_513141.1| - 0.046 14.2 1.0 0.064 13.7 1.0 1.2 1 0 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) ZnuA PF01297.17 gi|89255779|ref|YP_513141.1| - 0.047 13.1 0.4 0.053 12.9 0.4 1.1 1 0 0 1 1 1 0 Zinc-uptake complex component A periplasmic Prefoldin_2 PF01920.20 gi|89255779|ref|YP_513141.1| - 0.057 13.4 5.0 0.057 13.4 5.0 2.0 1 1 1 2 2 2 0 Prefoldin subunit DUF4446 PF14584.6 gi|89255779|ref|YP_513141.1| - 0.061 13.3 3.2 0.082 12.9 3.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4446) FapA PF03961.13 gi|89255779|ref|YP_513141.1| - 0.072 11.7 2.8 0.071 11.7 2.8 1.0 1 0 0 1 1 1 0 Flagellar Assembly Protein A Lectin_N PF03954.14 gi|89255779|ref|YP_513141.1| - 0.11 12.2 4.6 0.15 11.8 4.6 1.3 1 1 0 1 1 1 0 Hepatic lectin, N-terminal domain 3H PF02829.14 gi|89255779|ref|YP_513141.1| - 0.14 12.5 1.6 6.7 7.1 0.3 2.1 1 1 1 2 2 2 0 3H domain GCN5L1 PF06320.13 gi|89255779|ref|YP_513141.1| - 0.16 12.1 4.1 0.26 11.5 4.1 1.5 1 1 0 1 1 1 0 GCN5-like protein 1 (GCN5L1) Med4 PF10018.9 gi|89255779|ref|YP_513141.1| - 0.3 10.8 5.0 0.39 10.4 4.8 1.4 1 1 0 1 1 1 0 Vitamin-D-receptor interacting Mediator subunit 4 DUF5320 PF17253.2 gi|89255779|ref|YP_513141.1| - 0.39 11.8 1.0 0.51 11.4 1.0 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5320) N_methyl PF07963.12 gi|89255780|ref|YP_513142.1| - 0.0044 16.5 2.6 0.0044 16.5 2.6 2.3 2 0 0 2 2 2 1 Prokaryotic N-terminal methylation motif Peptidase_M48 PF01435.18 gi|89255781|ref|YP_513143.1| - 6.2e-36 124.0 3.4 6.3e-36 124.0 2.1 1.6 2 0 0 2 2 2 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|89255781|ref|YP_513143.1| - 1.2e-05 24.7 2.1 1.2e-05 24.7 2.1 2.3 1 1 2 3 3 3 1 BlaR1 peptidase M56 DHHC PF01529.20 gi|89255781|ref|YP_513143.1| - 0.0095 16.0 18.5 0.16 12.1 4.7 2.2 2 0 0 2 2 2 2 DHHC palmitoyltransferase DUF2268 PF10026.9 gi|89255781|ref|YP_513143.1| - 0.014 15.0 0.1 0.025 14.2 0.1 1.4 1 0 0 1 1 1 0 Predicted Zn-dependent protease (DUF2268) DUF2569 PF10754.9 gi|89255781|ref|YP_513143.1| - 0.027 14.9 12.4 0.093 13.2 3.4 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2569) DUF4157 PF13699.6 gi|89255781|ref|YP_513143.1| - 0.18 12.0 0.2 0.82 9.9 0.0 2.1 3 0 0 3 3 3 0 Domain of unknown function (DUF4157) DUF996 PF06195.13 gi|89255781|ref|YP_513143.1| - 0.66 10.3 17.0 0.38 11.0 4.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF996) LemA PF04011.12 gi|89255782|ref|YP_513144.1| - 1.3e-36 125.7 9.2 1.9e-36 125.1 9.2 1.2 1 0 0 1 1 1 1 LemA family DUF4330 PF14221.6 gi|89255782|ref|YP_513144.1| - 0.0091 16.2 6.1 0.014 15.6 6.1 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4330) Inhibitor_I53 PF11714.8 gi|89255782|ref|YP_513144.1| - 0.097 12.9 1.5 0.16 12.2 0.9 1.7 1 1 0 1 1 1 0 Thrombin inhibitor Madanin TUDOR_5 PF18359.1 gi|89255782|ref|YP_513144.1| - 0.2 11.4 0.7 1.3 8.8 0.0 2.3 2 0 0 2 2 2 0 Histone methyltransferase Tudor domain 1 Peptidase_M57 PF12388.8 gi|89255782|ref|YP_513144.1| - 0.26 10.9 1.0 0.36 10.4 0.7 1.4 1 1 0 1 1 1 0 Dual-action HEIGH metallo-peptidase AI-2E_transport PF01594.16 gi|89255782|ref|YP_513144.1| - 0.78 8.8 6.2 0.24 10.5 1.8 1.9 1 1 1 2 2 2 0 AI-2E family transporter Phage_holin_6_1 PF09682.10 gi|89255782|ref|YP_513144.1| - 1.4 9.3 15.7 3.5 8.1 7.7 2.6 1 1 1 2 2 2 0 Bacteriophage holin of superfamily 6 (Holin_LLH) Wzy_C PF04932.15 gi|89255782|ref|YP_513144.1| - 1.9 8.1 3.7 2.2 7.9 3.7 1.4 1 1 0 1 1 1 0 O-Antigen ligase DDE_Tnp_1_2 PF13586.6 gi|89255783|ref|YP_513145.1| - 1.2e-13 51.3 0.0 2.1e-13 50.5 0.0 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|89255783|ref|YP_513145.1| - 5.2e-12 45.9 2.0 4.6e-11 42.8 2.0 1.9 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 gi|89255783|ref|YP_513145.1| - 7.9e-08 32.4 0.0 1.1e-07 32.0 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF4096 PF13340.6 gi|89255783|ref|YP_513145.1| - 0.0062 16.7 0.0 0.012 15.8 0.0 1.5 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) HTH_5 PF01022.20 gi|89255784|ref|YP_513146.1| - 4.4e-07 29.7 0.3 8.7e-07 28.7 0.3 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|89255784|ref|YP_513146.1| - 0.00017 21.6 0.0 0.00028 20.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|89255784|ref|YP_513146.1| - 0.0044 16.9 0.0 0.011 15.6 0.0 1.7 1 0 0 1 1 1 1 MarR family DUF5621 PF18532.1 gi|89255784|ref|YP_513146.1| - 0.031 14.2 0.2 0.038 13.9 0.2 1.2 1 1 0 1 1 1 0 Domain of unknown function (DUF5621) Orbi_VP4 PF05059.12 gi|89255784|ref|YP_513146.1| - 0.063 11.3 0.4 0.1 10.6 0.3 1.3 1 1 0 1 1 1 0 Orbivirus VP4 core protein HTH_34 PF13601.6 gi|89255784|ref|YP_513146.1| - 0.13 12.5 0.0 0.22 11.7 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain Peptidase_C39_2 PF13529.6 gi|89255785|ref|YP_513147.1| - 1e-09 39.1 0.6 1.7e-09 38.4 0.1 1.6 2 0 0 2 2 2 1 Peptidase_C39 like family DUF3335 PF11814.8 gi|89255785|ref|YP_513147.1| - 6.1e-06 25.9 0.1 1.4e-05 24.6 0.0 1.6 2 0 0 2 2 2 1 Peptidase_C39 like family Peptidase_C39 PF03412.15 gi|89255785|ref|YP_513147.1| - 2.7e-05 24.0 0.0 5.2e-05 23.1 0.0 1.5 1 0 0 1 1 1 1 Peptidase C39 family DUF4969 PF16339.5 gi|89255785|ref|YP_513147.1| - 0.079 13.3 0.1 0.13 12.6 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4969) NAD_Gly3P_dh_C PF07479.14 gi|89255786|ref|YP_513148.1| - 1.3e-51 174.6 0.7 2.5e-51 173.7 0.7 1.5 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus NAD_Gly3P_dh_N PF01210.23 gi|89255786|ref|YP_513148.1| - 8.2e-39 133.1 0.0 1.3e-38 132.4 0.0 1.3 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.16 gi|89255786|ref|YP_513148.1| - 4.5e-07 29.6 0.0 1e-06 28.5 0.0 1.6 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA F420_oxidored PF03807.17 gi|89255786|ref|YP_513148.1| - 5.4e-06 26.9 0.0 2.9e-05 24.6 0.0 2.1 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.20 gi|89255786|ref|YP_513148.1| - 0.0054 16.8 0.1 0.48 10.5 0.0 3.2 3 2 0 3 3 3 1 Shikimate / quinate 5-dehydrogenase 3HCDH_N PF02737.18 gi|89255786|ref|YP_513148.1| - 0.02 14.8 0.0 0.034 14.0 0.0 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|89255786|ref|YP_513148.1| - 0.047 13.9 0.0 0.11 12.6 0.0 1.7 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Como_SCP PF02248.16 gi|89255786|ref|YP_513148.1| - 0.083 12.5 0.0 0.16 11.6 0.0 1.4 1 0 0 1 1 1 0 Small coat protein UDPG_MGDP_dh_C PF03720.15 gi|89255786|ref|YP_513148.1| - 0.1 13.0 0.0 0.27 11.7 0.0 1.7 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LrgB PF04172.16 gi|89255786|ref|YP_513148.1| - 0.16 11.5 4.0 0.078 12.5 1.5 1.7 2 0 0 2 2 2 0 LrgB-like family Colicin_V PF02674.16 gi|89255787|ref|YP_513149.1| - 2.5e-17 63.2 14.7 3e-17 62.9 14.7 1.0 1 0 0 1 1 1 1 Colicin V production protein DUF2206 PF09971.9 gi|89255787|ref|YP_513149.1| - 0.014 14.1 9.3 0.018 13.8 9.3 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2206) PHO4 PF01384.20 gi|89255787|ref|YP_513149.1| - 3.3 6.7 5.8 4.7 6.1 5.7 1.4 1 1 0 1 1 1 0 Phosphate transporter family ATPase PF06745.13 gi|89255788|ref|YP_513150.1| - 8.4e-17 61.3 3.0 1.5e-08 34.2 0.1 2.2 1 1 1 2 2 2 2 KaiC AAA_25 PF13481.6 gi|89255788|ref|YP_513150.1| - 3.3e-15 56.2 0.0 6.9e-15 55.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain Rubredoxin_2 PF18073.1 gi|89255788|ref|YP_513150.1| - 8.5e-12 44.6 8.3 1.3e-11 44.0 8.3 1.3 1 0 0 1 1 1 1 Rubredoxin metal binding domain ChlI PF13541.6 gi|89255788|ref|YP_513150.1| - 2.5e-11 43.5 0.1 7.2e-11 42.0 0.1 1.8 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase Rad51 PF08423.11 gi|89255788|ref|YP_513150.1| - 1.5e-09 37.5 0.9 9.1e-09 34.9 0.6 2.2 1 1 0 1 1 1 1 Rad51 DnaB_C PF03796.15 gi|89255788|ref|YP_513150.1| - 5e-08 32.6 0.4 0.0001 21.8 0.0 2.4 1 1 1 2 2 2 2 DnaB-like helicase C terminal domain AAA_24 PF13479.6 gi|89255788|ref|YP_513150.1| - 5.3e-06 26.3 0.0 8.2e-05 22.4 0.0 2.6 3 0 0 3 3 3 1 AAA domain Lon_C PF05362.13 gi|89255788|ref|YP_513150.1| - 1e-05 25.2 1.6 1.2e-05 25.0 0.3 1.7 2 0 0 2 2 2 1 Lon protease (S16) C-terminal proteolytic domain GvpD PF07088.11 gi|89255788|ref|YP_513150.1| - 0.00023 19.9 0.7 0.037 12.7 0.2 3.0 2 1 1 3 3 3 1 GvpD gas vesicle protein AAA_16 PF13191.6 gi|89255788|ref|YP_513150.1| - 0.0011 19.4 0.1 0.0029 18.0 0.1 1.6 1 1 1 2 2 2 1 AAA ATPase domain AAA_14 PF13173.6 gi|89255788|ref|YP_513150.1| - 0.0025 17.9 0.1 0.0084 16.1 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA PF00004.29 gi|89255788|ref|YP_513150.1| - 0.0029 18.0 0.1 0.0064 16.9 0.1 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|89255788|ref|YP_513150.1| - 0.0032 17.4 0.0 0.0056 16.7 0.0 1.6 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) DUF2075 PF09848.9 gi|89255788|ref|YP_513150.1| - 0.004 16.4 0.1 0.0054 16.0 0.1 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_22 PF13401.6 gi|89255788|ref|YP_513150.1| - 0.013 15.7 0.1 0.036 14.3 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|89255788|ref|YP_513150.1| - 0.029 14.7 0.2 0.5 10.7 0.2 2.7 2 1 0 2 2 2 0 AAA domain MCM PF00493.23 gi|89255788|ref|YP_513150.1| - 0.05 12.7 0.0 0.09 11.9 0.0 1.5 1 0 0 1 1 1 0 MCM P-loop domain zf-RING_10 PF16685.5 gi|89255788|ref|YP_513150.1| - 0.1 12.8 0.9 0.19 11.9 0.9 1.4 1 0 0 1 1 1 0 zinc RING finger of MSL2 zf_UBZ PF18439.1 gi|89255788|ref|YP_513150.1| - 0.16 11.6 0.4 0.29 10.8 0.4 1.4 1 0 0 1 1 1 0 Ubiquitin-Binding Zinc Finger PilZ PF07238.14 gi|89255789|ref|YP_513151.1| - 0.0028 18.0 0.0 0.005 17.1 0.0 1.4 1 0 0 1 1 1 1 PilZ domain Baseplate PF16774.5 gi|89255789|ref|YP_513151.1| - 0.024 14.5 0.1 0.049 13.5 0.1 1.4 1 0 0 1 1 1 0 Baseplate protein SNARE_assoc PF09335.11 gi|89255790|ref|YP_513152.1| - 4.8e-14 52.9 6.1 4.8e-14 52.9 6.1 1.7 2 0 0 2 2 2 1 SNARE associated Golgi protein Chorismate_synt PF01264.21 gi|89255791|ref|YP_513153.1| - 3.8e-140 466.2 0.1 4.3e-140 466.1 0.1 1.0 1 0 0 1 1 1 1 Chorismate synthase PQ-loop PF04193.14 gi|89255792|ref|YP_513154.1| - 8.4e-21 73.5 26.8 1.8e-11 43.7 6.6 3.2 3 1 0 3 3 3 2 PQ loop repeat SelR PF01641.18 gi|89255793|ref|YP_513155.1| - 1.5e-48 163.9 0.0 1.9e-48 163.5 0.0 1.1 1 0 0 1 1 1 1 SelR domain Qua1 PF16274.5 gi|89255793|ref|YP_513155.1| - 0.073 12.9 0.1 0.18 11.7 0.1 1.7 1 0 0 1 1 1 0 Qua1 domain Sod_Cu PF00080.20 gi|89255794|ref|YP_513156.1| - 4.8e-32 111.1 0.7 6.3e-32 110.7 0.7 1.1 1 0 0 1 1 1 1 Copper/zinc superoxide dismutase (SODC) FA_hydroxylase PF04116.13 gi|89255795|ref|YP_513157.1| - 3.4e-23 82.4 8.4 3.4e-23 82.4 8.4 1.9 2 0 0 2 2 2 1 Fatty acid hydroxylase superfamily AA_permease PF00324.21 gi|89255796|ref|YP_513158.1| - 6.5e-81 272.3 50.2 7.9e-81 272.1 50.2 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.6 gi|89255796|ref|YP_513158.1| - 9.8e-32 110.3 53.1 1.3e-31 109.9 53.1 1.1 1 0 0 1 1 1 1 Amino acid permease MannoseP_isomer PF01050.18 gi|89255797|ref|YP_513159.1| - 1.9e-41 141.4 0.5 2.2e-41 141.2 0.5 1.0 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_2 PF07883.11 gi|89255797|ref|YP_513159.1| - 1.8e-08 34.0 0.1 2.6e-08 33.4 0.1 1.3 1 0 0 1 1 1 1 Cupin domain Cupin_7 PF12973.7 gi|89255797|ref|YP_513159.1| - 0.0025 17.7 0.0 0.0036 17.2 0.0 1.2 1 0 0 1 1 1 1 ChrR Cupin-like domain Cupin_1 PF00190.22 gi|89255797|ref|YP_513159.1| - 0.083 12.5 0.0 0.1 12.2 0.0 1.1 1 0 0 1 1 1 0 Cupin Cupin_3 PF05899.12 gi|89255797|ref|YP_513159.1| - 0.11 12.2 0.0 0.19 11.5 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF861) Aminotran_1_2 PF00155.21 gi|89255798|ref|YP_513160.1| - 1.7e-43 149.2 0.0 1.9e-43 149.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|89255798|ref|YP_513160.1| - 3.1e-05 23.4 0.1 5.1e-05 22.7 0.1 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|89255798|ref|YP_513160.1| - 0.00015 20.4 0.0 0.00027 19.6 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 gi|89255798|ref|YP_513160.1| - 0.0019 17.2 0.0 0.0037 16.3 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|89255798|ref|YP_513160.1| - 0.012 14.9 0.1 0.088 12.1 0.1 2.0 1 1 0 1 1 1 0 Beta-eliminating lyase Cation_efflux PF01545.21 gi|89255799|ref|YP_513161.1| - 5.6e-29 101.3 18.0 6.7e-29 101.0 18.0 1.1 1 0 0 1 1 1 1 Cation efflux family ATG2_CAD PF13329.6 gi|89255799|ref|YP_513161.1| - 0.0086 15.8 0.0 0.016 14.9 0.0 1.5 1 0 0 1 1 1 1 Autophagy-related protein 2 CAD motif ZT_dimer PF16916.5 gi|89255799|ref|YP_513161.1| - 0.017 15.2 0.0 0.029 14.5 0.0 1.3 1 0 0 1 1 1 0 Dimerisation domain of Zinc Transporter DUF749 PF05370.11 gi|89255799|ref|YP_513161.1| - 0.062 13.4 0.3 1.7 8.8 0.2 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF749) Ubiquitin_5 PF18037.1 gi|89255799|ref|YP_513161.1| - 0.096 13.1 0.5 0.42 11.0 0.2 2.1 2 0 0 2 2 2 0 Ubiquitin-like domain Halogen_Hydrol PF10112.9 gi|89255799|ref|YP_513161.1| - 5.8 6.9 9.2 1.1 9.2 0.5 2.7 3 0 0 3 3 3 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein Stevor PF17410.2 gi|89255799|ref|YP_513161.1| - 6.7 6.2 7.1 8.9 5.8 5.6 2.0 1 1 1 2 2 2 0 Subtelomeric Variable Open Reading frame SMC_N PF02463.19 gi|89255800|ref|YP_513162.1| - 7.7e-22 77.8 9.9 1.7e-21 76.7 9.9 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|89255800|ref|YP_513162.1| - 1.4e-17 64.9 12.5 1.4e-17 64.9 12.5 3.4 2 1 1 3 3 2 1 AAA domain AAA_21 PF13304.6 gi|89255800|ref|YP_513162.1| - 2.4e-13 50.6 5.0 2.1e-06 27.8 0.2 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|89255800|ref|YP_513162.1| - 2.2e-11 44.1 30.3 4.2e-08 33.3 30.3 2.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|89255800|ref|YP_513162.1| - 8.9e-08 31.8 0.1 1.7e-07 30.9 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|89255800|ref|YP_513162.1| - 0.0074 16.6 4.1 0.023 15.0 0.4 3.4 1 1 0 2 2 2 1 AAA domain F_actin_bind PF08919.10 gi|89255800|ref|YP_513162.1| - 0.014 15.5 1.6 0.014 15.5 1.6 3.1 3 1 0 3 3 3 0 F-actin binding HTH_Tnp_1 PF01527.20 gi|89255800|ref|YP_513162.1| - 0.037 14.3 0.6 0.26 11.6 0.1 2.8 2 1 1 3 3 2 0 Transposase RsgA_GTPase PF03193.16 gi|89255800|ref|YP_513162.1| - 0.043 13.7 2.3 0.076 12.9 0.1 2.6 2 1 0 2 2 2 0 RsgA GTPase Nucleolin_bd PF16725.5 gi|89255800|ref|YP_513162.1| - 0.065 12.9 0.5 0.065 12.9 0.5 2.6 3 0 0 3 3 2 0 Nucleolin binding domain AAA_16 PF13191.6 gi|89255800|ref|YP_513162.1| - 0.55 10.6 5.3 5.5 7.3 5.3 2.9 1 1 0 1 1 1 0 AAA ATPase domain zf-C4H2 PF10146.9 gi|89255800|ref|YP_513162.1| - 1.7 8.9 16.6 0.2 11.9 9.0 2.4 2 0 0 2 2 2 0 Zinc finger-containing protein HMMR_N PF15905.5 gi|89255800|ref|YP_513162.1| - 5.1 6.5 31.5 2.7 7.4 6.3 2.5 1 1 0 2 2 2 0 Hyaluronan mediated motility receptor N-terminal TetR_C_13 PF16925.5 gi|89255800|ref|YP_513162.1| - 5.3 7.0 7.6 4.3 7.3 0.7 2.8 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain Phasin PF05597.11 gi|89255800|ref|YP_513162.1| - 5.4 7.0 9.8 1.4 8.9 0.9 3.1 2 1 0 3 3 3 0 Poly(hydroxyalcanoate) granule associated protein (phasin) DHR10 PF18595.1 gi|89255800|ref|YP_513162.1| - 6.9 6.8 32.5 4.6 7.3 16.3 3.8 2 1 1 3 3 3 0 Designed helical repeat protein 10 domain MIT PF04212.18 gi|89255801|ref|YP_513163.1| - 0.0037 17.3 3.3 0.6 10.2 0.1 2.9 2 1 0 2 2 2 2 MIT (microtubule interacting and transport) domain HutD PF05962.11 gi|89255801|ref|YP_513163.1| - 0.013 15.4 0.2 0.16 11.9 0.0 2.3 2 1 0 2 2 2 0 HutD FadA PF09403.10 gi|89255801|ref|YP_513163.1| - 0.21 12.1 16.8 0.82 10.2 4.2 2.5 1 1 0 2 2 2 0 Adhesion protein FadA DUF4047 PF13256.6 gi|89255801|ref|YP_513163.1| - 0.58 10.4 3.7 4.1 7.6 1.3 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF4047) LemA PF04011.12 gi|89255801|ref|YP_513163.1| - 3.1 7.7 14.3 0.057 13.3 2.0 2.8 1 1 0 2 2 2 0 LemA family T3SS_needle_F PF09392.10 gi|89255801|ref|YP_513163.1| - 9.4 6.5 13.8 4.7 7.5 0.2 4.0 2 1 2 4 4 4 0 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF N_methyl PF07963.12 gi|89255802|ref|YP_513164.1| - 6.1e-08 31.9 2.9 9.3e-08 31.3 2.9 1.3 1 0 0 1 1 1 1 Prokaryotic N-terminal methylation motif N_methyl PF07963.12 gi|89255803|ref|YP_513165.1| - 1e-11 43.8 2.9 1.2e-11 43.7 2.9 1.1 1 0 0 1 1 1 1 Prokaryotic N-terminal methylation motif FeoB_associated PF12669.7 gi|89255803|ref|YP_513165.1| - 0.33 11.4 2.5 0.5 10.8 2.5 1.3 1 0 0 1 1 1 0 FeoB-associated Cys-rich membrane protein PAP2 PF01569.21 gi|89255804|ref|YP_513166.1| - 1e-24 86.9 9.3 2.2e-24 85.8 9.3 1.5 1 0 0 1 1 1 1 PAP2 superfamily PAP2_3 PF14378.6 gi|89255804|ref|YP_513166.1| - 1.2e-06 28.3 7.3 1.2e-06 28.3 7.3 1.8 2 1 0 2 2 2 1 PAP2 superfamily PAP2_C PF14360.6 gi|89255804|ref|YP_513166.1| - 0.0056 17.2 7.8 0.0056 17.2 7.8 2.1 3 0 0 3 3 3 1 PAP2 superfamily C-terminal DUF212 PF02681.14 gi|89255804|ref|YP_513166.1| - 0.026 14.6 0.2 0.46 10.6 0.1 2.5 1 1 0 2 2 2 0 Divergent PAP2 family THF_DHG_CYH_C PF02882.19 gi|89255805|ref|YP_513167.1| - 6.3e-68 227.1 4.0 9.3e-68 226.6 4.0 1.3 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THF_DHG_CYH PF00763.23 gi|89255805|ref|YP_513167.1| - 4.5e-41 139.8 1.6 8.1e-41 138.9 1.6 1.4 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain UDPG_MGDP_dh_N PF03721.14 gi|89255805|ref|YP_513167.1| - 0.0049 16.5 0.3 0.042 13.4 0.1 2.1 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain GT-D PF08759.11 gi|89255805|ref|YP_513167.1| - 0.078 12.6 0.1 0.17 11.5 0.1 1.5 1 0 0 1 1 1 0 Glycosyltransferase GT-D fold SUB1_ProdP9 PF18213.1 gi|89255805|ref|YP_513167.1| - 0.13 12.1 0.0 0.27 11.1 0.0 1.5 1 0 0 1 1 1 0 SUB1 protease Prodomain ProdP9 AIRS_C PF02769.22 gi|89255806|ref|YP_513168.1| - 2.5e-30 105.7 0.0 3.8e-30 105.1 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|89255806|ref|YP_513168.1| - 5.3e-16 59.0 0.5 9.4e-16 58.3 0.5 1.4 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain SAICAR_synt PF01259.18 gi|89255807|ref|YP_513169.1| - 7.8e-76 255.0 0.0 1.4e-75 254.2 0.0 1.4 1 0 0 1 1 1 1 SAICAR synthetase GARS_A PF01071.19 gi|89255807|ref|YP_513169.1| - 6e-54 182.8 0.0 1.3e-53 181.7 0.0 1.6 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.15 gi|89255807|ref|YP_513169.1| - 2e-23 83.0 0.1 1.1e-22 80.6 0.1 2.3 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.16 gi|89255807|ref|YP_513169.1| - 1.1e-13 51.2 0.0 2.5e-13 50.1 0.0 1.7 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, C domain Formyl_trans_N PF00551.19 gi|89255808|ref|YP_513170.1| - 4.8e-55 186.1 0.3 5.5e-55 185.9 0.3 1.0 1 0 0 1 1 1 1 Formyl transferase Thia_YuaJ PF09515.10 gi|89255808|ref|YP_513170.1| - 0.15 12.1 0.3 0.2 11.6 0.3 1.2 1 0 0 1 1 1 0 Thiamine transporter protein (Thia_YuaJ) AIRC PF00731.20 gi|89255809|ref|YP_513171.1| - 2.1e-65 218.8 0.8 2.5e-65 218.6 0.8 1.0 1 0 0 1 1 1 1 AIR carboxylase ATP-grasp PF02222.22 gi|89255810|ref|YP_513172.1| - 1e-50 171.6 0.0 1.9e-50 170.8 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain PurK_C PF17769.1 gi|89255810|ref|YP_513172.1| - 1.8e-13 49.9 0.1 3.8e-13 48.9 0.1 1.5 1 0 0 1 1 1 1 Phosphoribosylaminoimidazole carboxylase C-terminal domain CPSase_L_D2 PF02786.17 gi|89255810|ref|YP_513172.1| - 2e-05 24.2 0.0 3.4e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain GARS_A PF01071.19 gi|89255810|ref|YP_513172.1| - 2.7e-05 24.0 0.0 0.00011 22.1 0.0 1.9 1 1 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_3 PF02655.14 gi|89255810|ref|YP_513172.1| - 0.013 15.5 0.1 0.058 13.4 0.0 2.0 1 1 1 2 2 2 0 ATP-grasp domain NID PF07292.13 gi|89255810|ref|YP_513172.1| - 0.085 13.5 0.1 0.56 10.9 0.1 2.2 2 0 0 2 2 2 0 Nmi/IFP 35 domain (NID) Nucleoporin2 PF04096.14 gi|89255810|ref|YP_513172.1| - 0.1 12.7 0.1 0.19 11.9 0.1 1.4 1 0 0 1 1 1 0 Nucleoporin autopeptidase DDE_Tnp_1_2 PF13586.6 gi|89255811|ref|YP_513173.1| - 1e-13 51.5 0.0 1.8e-13 50.6 0.0 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|89255811|ref|YP_513173.1| - 4.2e-12 46.2 2.0 3.8e-11 43.0 2.0 1.9 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 gi|89255811|ref|YP_513173.1| - 6.9e-08 32.7 0.0 9.7e-08 32.2 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.6 gi|89255811|ref|YP_513173.1| - 0.00017 21.3 0.2 0.00023 20.9 0.2 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease DUF4096 PF13340.6 gi|89255811|ref|YP_513173.1| - 0.0056 16.9 0.0 0.011 15.9 0.0 1.5 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) Sua5_yciO_yrdC PF01300.18 gi|89255812|ref|YP_513174.1| - 3.5e-23 82.0 0.0 4.2e-23 81.8 0.0 1.0 1 0 0 1 1 1 1 Telomere recombination IspA PF04279.15 gi|89255813|ref|YP_513175.1| - 1.2e-56 191.7 20.9 1.3e-56 191.6 20.9 1.0 1 0 0 1 1 1 1 Intracellular septation protein A CstA PF02554.14 gi|89255813|ref|YP_513175.1| - 0.0017 17.3 6.8 0.0019 17.2 6.8 1.2 1 0 0 1 1 1 1 Carbon starvation protein CstA MerC PF03203.14 gi|89255813|ref|YP_513175.1| - 0.01 16.3 9.3 0.11 12.9 5.3 2.1 2 0 0 2 2 2 1 MerC mercury resistance protein Tox-ART-HYE1 PF15634.6 gi|89255813|ref|YP_513175.1| - 0.054 12.8 0.2 0.072 12.4 0.2 1.2 1 0 0 1 1 1 0 HYE1 signature containing ADP-ribosyltransferase DUF983 PF06170.12 gi|89255813|ref|YP_513175.1| - 0.41 11.1 0.2 0.41 11.1 0.2 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF983) DUF1240 PF06836.12 gi|89255813|ref|YP_513175.1| - 1.6 9.3 7.9 4.2 8.0 0.0 2.8 1 1 1 3 3 3 0 Protein of unknown function (DUF1240) DUF3021 PF11457.8 gi|89255813|ref|YP_513175.1| - 5.1 7.4 24.3 8.3 6.8 5.5 2.4 1 1 0 2 2 2 0 Protein of unknown function (DUF3021) MFS_1 PF07690.16 gi|89255813|ref|YP_513175.1| - 5.2 5.9 16.2 0.11 11.4 5.6 2.0 1 1 1 2 2 2 0 Major Facilitator Superfamily DUF2207 PF09972.9 gi|89255814|ref|YP_513176.1| - 0.38 9.5 8.3 0.4 9.4 8.3 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Phage_holin_3_6 PF07332.11 gi|89255814|ref|YP_513176.1| - 0.71 9.9 4.7 0.82 9.7 4.7 1.1 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III Glucokinase PF02685.16 gi|89255815|ref|YP_513177.1| - 9.4e-110 366.5 0.0 1.1e-109 366.3 0.0 1.0 1 0 0 1 1 1 1 Glucokinase DUF3310 PF11753.8 gi|89255815|ref|YP_513177.1| - 0.0054 16.9 0.1 0.039 14.2 0.0 2.2 1 1 1 2 2 2 1 Protein of unknwon function (DUF3310) ROK PF00480.20 gi|89255815|ref|YP_513177.1| - 0.0078 15.7 0.2 0.014 14.8 0.2 1.6 1 1 0 1 1 1 1 ROK family Statherin PF03875.13 gi|89255815|ref|YP_513177.1| - 0.19 11.8 0.2 0.51 10.5 0.2 1.7 1 0 0 1 1 1 0 Statherin Ubie_methyltran PF01209.18 gi|89255816|ref|YP_513178.1| - 4.4e-101 337.1 0.1 5.4e-101 336.8 0.1 1.0 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.6 gi|89255816|ref|YP_513178.1| - 5.8e-23 81.4 0.0 1e-22 80.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|89255816|ref|YP_513178.1| - 1.9e-20 73.2 0.1 7.7e-20 71.2 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|89255816|ref|YP_513178.1| - 9.5e-20 71.1 0.0 1.6e-19 70.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|89255816|ref|YP_513178.1| - 5.5e-16 58.8 0.0 7.2e-16 58.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|89255816|ref|YP_513178.1| - 2.6e-11 44.1 0.0 4.5e-11 43.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|89255816|ref|YP_513178.1| - 0.00015 21.6 0.0 0.00025 20.9 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.14 gi|89255816|ref|YP_513178.1| - 0.00023 20.7 0.0 0.00041 19.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain MetW PF07021.12 gi|89255816|ref|YP_513178.1| - 0.019 14.6 0.1 0.032 13.8 0.1 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW UPF0020 PF01170.18 gi|89255816|ref|YP_513178.1| - 0.026 14.2 0.0 0.057 13.1 0.0 1.7 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 Methyltransf_18 PF12847.7 gi|89255816|ref|YP_513178.1| - 0.032 14.2 0.0 0.088 12.7 0.0 1.6 2 0 0 2 2 2 0 Methyltransferase domain RrnaAD PF00398.20 gi|89255816|ref|YP_513178.1| - 0.034 13.2 0.0 0.046 12.8 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase NNMT_PNMT_TEMT PF01234.17 gi|89255816|ref|YP_513178.1| - 0.082 12.1 0.1 1.3 8.2 0.0 2.1 1 1 1 2 2 2 0 NNMT/PNMT/TEMT family Methyltransf_5 PF01795.19 gi|89255816|ref|YP_513178.1| - 0.18 11.3 0.0 13 5.2 0.0 2.4 1 1 1 2 2 2 0 MraW methylase family DUF3658 PF12395.8 gi|89255817|ref|YP_513179.1| - 0.014 15.3 0.4 0.053 13.4 0.0 2.0 2 1 0 3 3 3 0 Protein of unknown function SPOB_ab PF14682.6 gi|89255817|ref|YP_513179.1| - 0.042 13.9 0.5 0.56 10.3 0.1 2.5 1 1 1 2 2 2 0 Sporulation initiation phospho-transferase B, C-terminal ABC1 PF03109.16 gi|89255818|ref|YP_513180.1| - 6.5e-33 113.4 0.7 1.2e-32 112.6 0.7 1.4 1 0 0 1 1 1 1 ABC1 family APH PF01636.23 gi|89255818|ref|YP_513180.1| - 0.0082 16.1 0.1 0.23 11.3 0.1 2.2 1 1 1 2 2 2 1 Phosphotransferase enzyme family Pkinase PF00069.25 gi|89255818|ref|YP_513180.1| - 0.095 12.0 0.0 0.21 10.9 0.0 1.6 1 0 0 1 1 1 0 Protein kinase domain FAM47 PF14642.6 gi|89255818|ref|YP_513180.1| - 0.19 11.3 0.0 0.39 10.2 0.0 1.5 1 0 0 1 1 1 0 FAM47 family HIT PF01230.23 gi|89255819|ref|YP_513181.1| - 1.3e-26 93.2 0.0 1.5e-26 93.0 0.0 1.0 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 gi|89255819|ref|YP_513181.1| - 2.7e-24 85.8 0.0 3.2e-24 85.6 0.0 1.0 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.15 gi|89255819|ref|YP_513181.1| - 0.027 14.4 0.5 0.03 14.2 0.5 1.3 1 1 0 1 1 1 0 Protein similar to CwfJ C-terminus 1 Pribosyltran PF00156.27 gi|89255820|ref|YP_513182.1| - 1.4e-05 24.7 0.1 2e-05 24.2 0.1 1.4 1 1 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|89255820|ref|YP_513182.1| - 7.5e-05 22.3 0.0 0.00038 20.0 0.0 2.0 2 0 0 2 2 2 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|89255820|ref|YP_513182.1| - 0.00026 20.5 0.1 0.00037 20.1 0.1 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase Methyltransf_23 PF13489.6 gi|89255821|ref|YP_513183.1| - 8.9e-06 25.6 0.0 1.3e-05 25.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|89255821|ref|YP_513183.1| - 0.00013 21.8 0.1 0.0002 21.2 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|89255821|ref|YP_513183.1| - 0.00013 22.6 0.1 0.00036 21.2 0.1 1.8 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|89255821|ref|YP_513183.1| - 0.0018 18.9 0.0 0.0042 17.7 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Astro_capsid_p2 PF16580.5 gi|89255821|ref|YP_513183.1| - 0.0056 16.1 0.9 0.0093 15.4 0.9 1.3 1 0 0 1 1 1 1 C-terminal tail of astrovirus capsid projection or spike Methyltransf_25 PF13649.6 gi|89255821|ref|YP_513183.1| - 0.061 14.0 0.0 0.14 12.9 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain TERF2_RBM PF16772.5 gi|89255821|ref|YP_513183.1| - 0.18 11.2 0.8 4.9 6.7 0.1 2.5 2 0 0 2 2 2 0 Telomeric repeat-binding factor 2 Rap1-binding motif AAA_32 PF13654.6 gi|89255822|ref|YP_513184.1| - 0.0024 16.7 5.6 0.003 16.4 5.6 1.1 1 0 0 1 1 1 1 AAA domain MurB_C PF02873.16 gi|89255823|ref|YP_513185.1| - 5.7e-23 81.2 0.0 1.5e-22 79.9 0.0 1.7 2 1 0 2 2 2 1 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain FAD_binding_4 PF01565.23 gi|89255823|ref|YP_513185.1| - 8.5e-15 54.7 0.0 3.5e-14 52.7 0.0 1.8 2 0 0 2 2 2 1 FAD binding domain EPSP_synthase PF00275.20 gi|89255824|ref|YP_513186.1| - 5.5e-58 196.6 0.1 6.2e-58 196.5 0.1 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DUF4369 PF14289.6 gi|89255824|ref|YP_513186.1| - 0.099 13.2 2.0 4.8 7.8 0.0 3.7 4 0 0 4 4 4 0 Domain of unknown function (DUF4369) MMR_HSR1 PF01926.23 gi|89255825|ref|YP_513187.1| - 4.8e-47 158.8 2.2 3.4e-23 81.9 0.1 2.3 2 0 0 2 2 2 2 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|89255825|ref|YP_513187.1| - 3.6e-30 104.5 0.5 5e-14 52.1 0.1 2.2 2 0 0 2 2 2 2 Ferrous iron transport protein B KH_dom-like PF14714.6 gi|89255825|ref|YP_513187.1| - 3e-25 88.3 0.4 6.9e-25 87.2 0.1 1.9 2 0 0 2 2 1 1 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal GTP_EFTU PF00009.27 gi|89255825|ref|YP_513187.1| - 7.9e-19 68.0 12.1 5.3e-10 39.2 1.5 4.9 3 2 0 3 3 3 2 Elongation factor Tu GTP binding domain Dynamin_N PF00350.23 gi|89255825|ref|YP_513187.1| - 8.4e-12 45.5 3.3 0.0039 17.2 0.2 4.7 3 1 1 4 4 4 4 Dynamin family RsgA_GTPase PF03193.16 gi|89255825|ref|YP_513187.1| - 5.5e-10 39.4 2.0 0.0042 17.0 0.2 4.4 3 1 0 3 3 3 2 RsgA GTPase AIG1 PF04548.16 gi|89255825|ref|YP_513187.1| - 1.4e-08 34.3 1.0 0.0036 16.6 0.1 2.6 2 0 0 2 2 2 2 AIG1 family Ras PF00071.22 gi|89255825|ref|YP_513187.1| - 2.3e-07 30.6 3.8 0.0022 17.6 0.6 2.8 2 1 0 2 2 2 2 Ras family Roc PF08477.13 gi|89255825|ref|YP_513187.1| - 3.1e-06 27.4 1.2 0.045 14.0 0.2 3.5 2 2 0 2 2 2 2 Ras of Complex, Roc, domain of DAPkinase AAA_24 PF13479.6 gi|89255825|ref|YP_513187.1| - 5.3e-06 26.3 0.2 0.036 13.8 0.1 2.6 2 1 0 2 2 2 2 AAA domain PduV-EutP PF10662.9 gi|89255825|ref|YP_513187.1| - 2.7e-05 23.9 0.9 0.0029 17.3 0.2 3.2 3 1 0 3 3 3 1 Ethanolamine utilisation - propanediol utilisation SRPRB PF09439.10 gi|89255825|ref|YP_513187.1| - 4.8e-05 22.9 0.2 0.025 14.0 0.0 2.8 3 0 0 3 3 3 1 Signal recognition particle receptor beta subunit cobW PF02492.19 gi|89255825|ref|YP_513187.1| - 7.9e-05 22.3 5.5 0.02 14.5 0.1 3.0 2 2 2 4 4 4 2 CobW/HypB/UreG, nucleotide-binding domain ABC_tran PF00005.27 gi|89255825|ref|YP_513187.1| - 0.00016 22.2 0.0 0.12 12.9 0.0 2.5 2 0 0 2 2 2 2 ABC transporter MMR_HSR1_Xtn PF16897.5 gi|89255825|ref|YP_513187.1| - 0.00021 21.3 0.4 0.07 13.1 0.0 2.3 2 0 0 2 2 2 1 C-terminal region of MMR_HSR1 domain NB-ARC PF00931.22 gi|89255825|ref|YP_513187.1| - 0.00046 19.4 0.1 0.047 12.9 0.0 2.5 2 0 0 2 2 2 1 NB-ARC domain AAA_29 PF13555.6 gi|89255825|ref|YP_513187.1| - 0.0036 17.0 0.0 3.3 7.5 0.0 2.6 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|89255825|ref|YP_513187.1| - 0.0071 16.6 0.0 3.9 7.7 0.0 2.8 3 0 0 3 3 2 1 AAA domain RNA_helicase PF00910.22 gi|89255825|ref|YP_513187.1| - 0.012 15.9 0.0 9.2 6.7 0.0 3.1 2 1 0 2 2 2 0 RNA helicase Septin PF00735.18 gi|89255825|ref|YP_513187.1| - 0.023 14.0 0.2 1.4 8.1 0.0 3.0 2 1 1 3 3 3 0 Septin NTPase_1 PF03266.15 gi|89255825|ref|YP_513187.1| - 0.035 14.0 0.4 12 5.7 0.1 3.5 3 1 0 3 3 3 0 NTPase FtsK_SpoIIIE PF01580.18 gi|89255825|ref|YP_513187.1| - 0.061 12.7 1.5 4.6 6.5 0.1 3.0 2 1 1 3 3 3 0 FtsK/SpoIIIE family AAA_18 PF13238.6 gi|89255825|ref|YP_513187.1| - 0.062 13.8 0.2 9.5 6.8 0.0 3.1 2 1 0 2 2 2 0 AAA domain PDDEXK_4 PF14281.6 gi|89255825|ref|YP_513187.1| - 0.099 12.8 0.5 0.99 9.5 0.1 2.3 1 1 1 2 2 2 0 PD-(D/E)XK nuclease superfamily TniB PF05621.11 gi|89255825|ref|YP_513187.1| - 0.11 12.0 0.1 17 4.8 0.0 2.8 2 1 0 2 2 2 0 Bacterial TniB protein MspA PF09203.11 gi|89255826|ref|YP_513188.1| - 0.022 14.6 1.2 0.14 12.0 1.2 2.0 1 1 0 1 1 1 0 MspA FixG_C PF11614.8 gi|89255826|ref|YP_513188.1| - 0.026 14.7 0.0 0.041 14.1 0.0 1.3 1 0 0 1 1 1 0 IG-like fold at C-terminal of FixG, putative oxidoreductase DDE_Tnp_1_2 PF13586.6 gi|89255827|ref|YP_513189.1| - 1.7e-13 50.7 0.0 3.2e-13 49.9 0.0 1.5 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|89255827|ref|YP_513189.1| - 9.7e-12 45.0 1.9 7.6e-11 42.1 1.9 1.9 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 gi|89255827|ref|YP_513189.1| - 1.3e-07 31.8 0.0 1.9e-07 31.3 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF4096 PF13340.6 gi|89255827|ref|YP_513189.1| - 0.0087 16.3 0.0 0.016 15.4 0.0 1.5 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) DDE_3 PF13358.6 gi|89255828|ref|YP_513190.1| - 2e-29 102.2 0.0 7.5e-29 100.4 0.0 1.8 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_29 PF13551.6 gi|89255828|ref|YP_513190.1| - 0.0029 17.6 0.0 0.0073 16.3 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn helix HTH_Tnp_IS630 PF01710.16 gi|89255828|ref|YP_513190.1| - 0.0032 17.5 1.8 0.0082 16.2 0.8 2.2 2 1 0 2 2 2 1 Transposase HTH_40 PF14493.6 gi|89255828|ref|YP_513190.1| - 0.014 15.8 0.0 0.061 13.8 0.0 2.0 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_28 PF13518.6 gi|89255828|ref|YP_513190.1| - 0.023 14.8 0.0 0.066 13.3 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|89255828|ref|YP_513190.1| - 0.1 12.4 0.0 0.31 10.9 0.0 1.9 1 0 0 1 1 1 0 Homeodomain-like domain rve PF00665.26 gi|89255828|ref|YP_513190.1| - 0.14 12.4 0.0 0.24 11.6 0.0 1.4 1 0 0 1 1 1 0 Integrase core domain UPF0102 PF02021.17 gi|89255829|ref|YP_513191.1| - 1.5e-19 70.0 0.0 1.8e-19 69.8 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0102 NERD PF08378.11 gi|89255829|ref|YP_513191.1| - 3.1e-05 24.4 0.0 3.3e-05 24.3 0.0 1.1 1 0 0 1 1 1 1 Nuclease-related domain DUF234 PF03008.14 gi|89255829|ref|YP_513191.1| - 0.00045 20.6 0.1 0.00092 19.6 0.1 1.5 1 1 0 1 1 1 1 Archaea bacterial proteins of unknown function Hjc PF01870.18 gi|89255829|ref|YP_513191.1| - 0.00066 19.6 0.1 0.00092 19.2 0.1 1.3 1 1 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) Peptidase_M3 PF01432.20 gi|89255830|ref|YP_513192.1| - 1.4e-125 420.2 2.8 2.7e-125 419.2 2.8 1.5 1 0 0 1 1 1 1 Peptidase family M3 TrbM PF07424.11 gi|89255830|ref|YP_513192.1| - 0.028 14.4 0.6 0.085 12.8 0.1 1.9 1 1 1 2 2 2 0 TrbM ThrE PF06738.12 gi|89255830|ref|YP_513192.1| - 0.1 12.0 0.1 9.8 5.5 0.1 2.4 2 0 0 2 2 2 0 Putative threonine/serine exporter Peptidase_M50B PF13398.6 gi|89255830|ref|YP_513192.1| - 0.21 11.2 0.0 0.33 10.6 0.0 1.2 1 0 0 1 1 1 0 Peptidase M50B-like DUF498 PF04430.14 gi|89255831|ref|YP_513193.1| - 2.1e-22 79.2 0.0 2.4e-22 79.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF498/DUF598) Bmp PF02608.14 gi|89255831|ref|YP_513193.1| - 0.12 11.3 0.1 0.25 10.3 0.1 1.6 1 1 0 1 1 1 0 ABC transporter substrate-binding protein PnrA-like DUF2914 PF11141.8 gi|89255832|ref|YP_513194.1| - 0.14 12.0 0.1 0.22 11.3 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2914) Pur_ac_phosph_N PF16656.5 gi|89255832|ref|YP_513194.1| - 0.14 12.7 3.0 0.38 11.4 0.8 2.0 2 0 0 2 2 2 0 Purple acid Phosphatase, N-terminal domain APG6_N PF17675.1 gi|89255833|ref|YP_513195.1| - 0.0068 16.9 33.4 0.018 15.6 15.7 2.2 1 1 0 2 2 2 2 Apg6 coiled-coil region CEP63 PF17045.5 gi|89255833|ref|YP_513195.1| - 0.017 15.1 27.8 0.022 14.7 27.8 1.1 1 0 0 1 1 1 0 Centrosomal protein of 63 kDa Nup54 PF13874.6 gi|89255833|ref|YP_513195.1| - 0.017 15.2 15.4 0.017 15.2 15.4 2.1 1 1 0 2 2 2 0 Nucleoporin complex subunit 54 DUF4446 PF14584.6 gi|89255833|ref|YP_513195.1| - 0.022 14.7 19.7 0.2 11.6 5.1 2.2 1 1 0 2 2 2 0 Protein of unknown function (DUF4446) Fib_alpha PF08702.10 gi|89255833|ref|YP_513195.1| - 0.041 14.1 26.4 0.48 10.6 10.6 2.2 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family DUF948 PF06103.11 gi|89255833|ref|YP_513195.1| - 0.047 14.0 14.6 1.1 9.6 2.9 2.6 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) LPD39 PF18858.1 gi|89255833|ref|YP_513195.1| - 0.06 13.4 19.2 0.77 9.8 9.6 2.1 1 1 1 2 2 2 0 Large polyvalent protein associated domain 39 DUF4665 PF15679.5 gi|89255833|ref|YP_513195.1| - 0.061 13.9 26.5 1 10.0 11.0 2.2 1 1 0 2 2 2 0 Domain of unknown function (DUF4665) ERM PF00769.19 gi|89255833|ref|YP_513195.1| - 0.074 12.9 33.5 0.095 12.5 10.5 2.0 1 1 1 2 2 2 0 Ezrin/radixin/moesin family GAS PF13851.6 gi|89255833|ref|YP_513195.1| - 0.12 11.7 36.2 1.9 7.8 18.3 2.1 1 1 1 2 2 2 0 Growth-arrest specific micro-tubule binding AAA_13 PF13166.6 gi|89255833|ref|YP_513195.1| - 0.15 10.6 24.4 0.17 10.5 24.4 1.0 1 0 0 1 1 1 0 AAA domain Transposase_21 PF02992.14 gi|89255833|ref|YP_513195.1| - 0.16 11.2 0.6 0.27 10.4 0.6 1.4 1 0 0 1 1 1 0 Transposase family tnp2 ATG16 PF08614.11 gi|89255833|ref|YP_513195.1| - 0.32 11.2 33.9 0.25 11.5 15.6 2.0 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) Muted PF14942.6 gi|89255833|ref|YP_513195.1| - 0.43 10.9 29.3 0.44 10.9 15.8 2.1 1 1 1 2 2 2 0 Organelle biogenesis, Muted-like protein TMPIT PF07851.13 gi|89255833|ref|YP_513195.1| - 0.53 9.5 29.5 0.9 8.7 13.4 2.1 1 1 1 2 2 2 0 TMPIT-like protein SCO1-SenC PF02630.14 gi|89255833|ref|YP_513195.1| - 0.61 10.0 3.9 0.26 11.2 0.9 1.8 1 1 1 2 2 2 0 SCO1/SenC OmpH PF03938.14 gi|89255833|ref|YP_513195.1| - 0.75 10.1 47.4 3.5 8.0 25.4 2.2 1 1 1 2 2 2 0 Outer membrane protein (OmpH-like) SLATT_6 PF18169.1 gi|89255833|ref|YP_513195.1| - 0.88 9.1 17.7 0.068 12.8 4.0 2.7 1 1 2 3 3 3 0 SMODS and SLOG-associating 2TM effector domain 6 DUF2730 PF10805.8 gi|89255833|ref|YP_513195.1| - 1.1 9.4 16.1 0.67 10.1 3.6 2.8 1 1 1 3 3 3 0 Protein of unknown function (DUF2730) DUF3138 PF11336.8 gi|89255833|ref|YP_513195.1| - 1.1 7.8 8.2 1.2 7.7 8.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3138) YkyA PF10368.9 gi|89255833|ref|YP_513195.1| - 1.3 8.6 36.0 3.1 7.4 36.0 1.5 1 1 0 1 1 1 0 Putative cell-wall binding lipoprotein WBP-1 PF11669.8 gi|89255833|ref|YP_513195.1| - 1.4 9.6 6.5 8.4 7.1 6.5 2.3 1 1 0 1 1 1 0 WW domain-binding protein 1 SH3BP5 PF05276.14 gi|89255833|ref|YP_513195.1| - 2.2 8.0 30.7 13 5.5 30.3 1.8 1 1 0 1 1 1 0 SH3 domain-binding protein 5 (SH3BP5) DUF4200 PF13863.6 gi|89255833|ref|YP_513195.1| - 2.4 8.6 38.4 0.93 9.9 15.6 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4200) Tup_N PF08581.10 gi|89255833|ref|YP_513195.1| - 2.9 8.2 21.8 5 7.5 3.7 2.6 2 1 0 2 2 2 0 Tup N-terminal Nup88 PF10168.9 gi|89255833|ref|YP_513195.1| - 3.3 5.4 29.1 4.3 5.0 29.1 1.0 1 0 0 1 1 1 0 Nuclear pore component Nucleoside_tran PF01733.18 gi|89255833|ref|YP_513195.1| - 3.8 6.8 7.6 0.3 10.4 2.7 1.6 1 1 1 2 2 2 0 Nucleoside transporter FlaC_arch PF05377.11 gi|89255833|ref|YP_513195.1| - 3.9 7.9 11.8 2.9 8.3 2.5 3.2 2 1 1 3 3 3 0 Flagella accessory protein C (FlaC) LMBR1 PF04791.16 gi|89255833|ref|YP_513195.1| - 4.1 6.2 18.0 5.3 5.8 18.0 1.2 1 0 0 1 1 1 0 LMBR1-like membrane protein Spc7 PF08317.11 gi|89255833|ref|YP_513195.1| - 4.4 6.1 32.7 14 4.4 32.0 1.8 1 1 0 1 1 1 0 Spc7 kinetochore protein TMF_TATA_bd PF12325.8 gi|89255833|ref|YP_513195.1| - 4.4 7.6 26.0 1.1 9.5 11.1 2.8 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding DotU PF09850.9 gi|89255833|ref|YP_513195.1| - 5.5 6.6 10.8 4.3 7.0 1.3 2.7 2 1 1 3 3 3 0 Type VI secretion system protein DotU KxDL PF10241.9 gi|89255833|ref|YP_513195.1| - 6.1 7.2 25.0 1.6 9.1 9.1 2.4 2 1 0 2 2 2 0 Uncharacterized conserved protein DUF1664 PF07889.12 gi|89255833|ref|YP_513195.1| - 6.5 6.8 21.7 8.5 6.4 8.2 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) V_ATPase_I PF01496.19 gi|89255833|ref|YP_513195.1| - 6.6 4.5 18.6 10 3.9 18.6 1.3 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Exonuc_VII_L PF02601.15 gi|89255833|ref|YP_513195.1| - 8 5.9 26.1 16 5.0 26.1 1.5 1 1 0 1 1 1 0 Exonuclease VII, large subunit Snapin_Pallidin PF14712.6 gi|89255833|ref|YP_513195.1| - 8.2 6.9 33.1 1 9.8 7.2 3.2 1 1 2 3 3 3 0 Snapin/Pallidin Halogen_Hydrol PF10112.9 gi|89255833|ref|YP_513195.1| - 8.3 6.4 18.6 0.16 12.0 3.1 2.7 1 1 1 2 2 2 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein DUF3450 PF11932.8 gi|89255833|ref|YP_513195.1| - 8.5 5.6 39.0 5.9 6.1 14.3 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) Tmemb_cc2 PF10267.9 gi|89255833|ref|YP_513195.1| - 8.8 5.4 28.9 5.5 6.0 11.6 2.1 1 1 1 2 2 2 0 Predicted transmembrane and coiled-coil 2 protein Ax_dynein_light PF10211.9 gi|89255833|ref|YP_513195.1| - 9.8 6.1 32.8 1.1 9.1 11.2 2.1 1 1 1 2 2 2 0 Axonemal dynein light chain LPAM_1 PF08139.12 gi|89255834|ref|YP_513196.1| - 0.00011 22.4 3.3 0.00019 21.8 3.3 1.4 1 0 0 1 1 1 1 Prokaryotic membrane lipoprotein lipid attachment site Calycin_like PF13944.6 gi|89255834|ref|YP_513196.1| - 0.047 14.0 0.5 0.061 13.6 0.5 1.2 1 0 0 1 1 1 0 Calycin-like beta-barrel domain Wzy_C PF04932.15 gi|89255835|ref|YP_513197.1| - 1.7e-08 34.2 6.7 1.7e-08 34.2 6.7 4.1 3 1 0 3 3 3 1 O-Antigen ligase Topoisom_bac PF01131.20 gi|89255836|ref|YP_513198.1| - 3.1e-135 451.4 7.0 4.2e-135 450.9 7.0 1.2 1 0 0 1 1 1 1 DNA topoisomerase zf-C4_Topoisom PF01396.19 gi|89255836|ref|YP_513198.1| - 3.3e-47 158.0 35.8 2.4e-17 62.4 5.3 4.4 4 0 0 4 4 4 4 Topoisomerase DNA binding C4 zinc finger Toprim PF01751.22 gi|89255836|ref|YP_513198.1| - 4.2e-28 97.6 0.5 1.3e-27 96.0 0.5 2.0 1 0 0 1 1 1 1 Toprim domain DUF4411 PF14367.6 gi|89255836|ref|YP_513198.1| - 0.008 16.1 0.7 2.1 8.2 0.2 2.5 2 0 0 2 2 2 1 Domain of unknown function (DUF4411) Toprim_4 PF13662.6 gi|89255836|ref|YP_513198.1| - 0.013 16.0 0.2 0.064 13.7 0.0 2.3 2 0 0 2 2 2 0 Toprim domain Asr PF06392.11 gi|89255836|ref|YP_513198.1| - 0.22 11.9 2.9 0.29 11.6 0.2 2.6 2 0 0 2 2 1 0 Acid shock protein repeat Zn-ribbon_8 PF09723.10 gi|89255836|ref|YP_513198.1| - 0.24 11.6 20.9 1.2 9.3 0.1 5.2 5 1 0 5 5 4 0 Zinc ribbon domain RNA_POL_M_15KD PF02150.16 gi|89255836|ref|YP_513198.1| - 0.31 10.9 21.8 1.4 8.9 0.3 4.4 3 1 2 5 5 5 0 RNA polymerases M/15 Kd subunit zf-TFIIB PF13453.6 gi|89255836|ref|YP_513198.1| - 0.61 9.5 14.3 4 6.9 0.0 4.5 4 0 0 4 4 4 0 Transcription factor zinc-finger zf-ribbon_3 PF13248.6 gi|89255836|ref|YP_513198.1| - 0.75 9.3 14.7 11 5.6 0.1 4.9 5 0 0 5 5 5 0 zinc-ribbon domain DNA_ligase_ZBD PF03119.16 gi|89255836|ref|YP_513198.1| - 2.1 8.5 24.3 0.38 10.8 0.6 5.0 4 1 0 4 4 4 0 NAD-dependent DNA ligase C4 zinc finger domain Zn_Tnp_IS1 PF03811.13 gi|89255836|ref|YP_513198.1| - 3.8 7.3 11.0 57 3.6 0.2 4.3 4 0 0 4 4 4 0 InsA N-terminal domain zinc_ribbon_9 PF14369.6 gi|89255836|ref|YP_513198.1| - 4 7.8 10.2 29 5.0 0.2 4.6 4 0 0 4 4 4 0 zinc-ribbon zf-IS66 PF13005.7 gi|89255836|ref|YP_513198.1| - 7.5 7.0 12.8 21 5.6 0.2 4.5 4 0 0 4 4 4 0 zinc-finger binding domain of transposase IS66 zf_UBZ PF18439.1 gi|89255836|ref|YP_513198.1| - 7.7 6.2 13.3 23 4.7 0.1 4.4 4 0 0 4 4 4 0 Ubiquitin-Binding Zinc Finger TF_Zn_Ribbon PF08271.12 gi|89255836|ref|YP_513198.1| - 8.1 6.1 14.2 29 4.3 0.1 4.5 4 0 0 4 4 4 0 TFIIB zinc-binding DZR PF12773.7 gi|89255836|ref|YP_513198.1| - 8.5 6.5 18.5 42 4.3 0.2 3.6 1 1 1 2 2 1 0 Double zinc ribbon AAA_31 PF13614.6 gi|89255837|ref|YP_513199.1| - 6.1e-21 75.1 1.5 5.5e-13 49.2 0.3 2.3 1 1 1 2 2 2 2 AAA domain MipZ PF09140.11 gi|89255837|ref|YP_513199.1| - 2.3e-14 53.3 0.2 5.2e-07 29.2 0.1 2.1 1 1 1 2 2 2 2 ATPase MipZ CbiA PF01656.23 gi|89255837|ref|YP_513199.1| - 6.9e-14 52.0 0.0 8.6e-14 51.7 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|89255837|ref|YP_513199.1| - 2.8e-09 36.8 1.6 3.6e-07 29.9 0.1 2.2 1 1 1 2 2 2 2 NUBPL iron-transfer P-loop NTPase CBP_BcsQ PF06564.12 gi|89255837|ref|YP_513199.1| - 7.4e-08 32.2 0.0 4.2e-05 23.1 0.0 2.1 1 1 1 2 2 2 2 Cellulose biosynthesis protein BcsQ VirC1 PF07015.11 gi|89255837|ref|YP_513199.1| - 0.00013 21.3 0.0 0.00019 20.8 0.0 1.2 1 0 0 1 1 1 1 VirC1 protein Fer4_NifH PF00142.18 gi|89255837|ref|YP_513199.1| - 0.00015 21.3 0.3 0.00036 20.1 0.1 1.6 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family SRP54 PF00448.22 gi|89255837|ref|YP_513199.1| - 0.00022 20.9 0.0 0.00038 20.2 0.0 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain DUF1442 PF07279.11 gi|89255837|ref|YP_513199.1| - 0.0022 17.3 0.0 0.003 16.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1442) ArsA_ATPase PF02374.15 gi|89255837|ref|YP_513199.1| - 0.0041 16.4 0.8 0.064 12.4 0.1 2.6 2 1 0 3 3 3 1 Anion-transporting ATPase APS_kinase PF01583.20 gi|89255837|ref|YP_513199.1| - 0.013 15.4 0.4 3.1 7.7 0.1 2.9 2 1 1 3 3 3 0 Adenylylsulphate kinase DUF87 PF01935.17 gi|89255837|ref|YP_513199.1| - 0.013 15.6 0.1 0.046 13.8 0.1 2.0 1 1 0 1 1 1 0 Helicase HerA, central domain DM13 PF10517.9 gi|89255837|ref|YP_513199.1| - 0.027 15.1 0.0 0.056 14.0 0.0 1.4 1 0 0 1 1 1 0 Electron transfer DM13 MeaB PF03308.16 gi|89255837|ref|YP_513199.1| - 0.031 13.3 0.0 0.084 11.8 0.0 1.6 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Tautomerase_3 PF14832.6 gi|89255837|ref|YP_513199.1| - 0.036 14.3 0.2 0.078 13.2 0.2 1.6 1 0 0 1 1 1 0 Putative oxalocrotonate tautomerase enzyme AAA_24 PF13479.6 gi|89255837|ref|YP_513199.1| - 0.042 13.6 0.1 0.071 12.8 0.1 1.3 1 0 0 1 1 1 0 AAA domain LpxK PF02606.14 gi|89255837|ref|YP_513199.1| - 0.052 12.6 0.1 0.11 11.5 0.1 1.4 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase AAA_25 PF13481.6 gi|89255837|ref|YP_513199.1| - 0.24 10.9 0.7 7.2 6.1 0.8 2.7 2 1 0 2 2 2 0 AAA domain KorB PF08535.10 gi|89255838|ref|YP_513200.1| - 5.3e-33 112.9 0.7 1.3e-32 111.7 0.7 1.7 1 0 0 1 1 1 1 KorB domain ParBc PF02195.18 gi|89255838|ref|YP_513200.1| - 1.9e-21 76.1 0.1 4.7e-21 74.9 0.1 1.7 1 0 0 1 1 1 1 ParB-like nuclease domain DUF739 PF05339.11 gi|89255838|ref|YP_513200.1| - 0.028 14.6 1.1 0.054 13.6 0.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF739) GATase PF00117.28 gi|89255839|ref|YP_513201.1| - 1.7e-10 41.0 0.0 2.3e-10 40.6 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.14 gi|89255839|ref|YP_513201.1| - 0.00041 20.0 0.0 0.00058 19.5 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_C26 PF07722.13 gi|89255839|ref|YP_513201.1| - 0.058 13.1 0.7 3.9 7.2 0.3 2.8 2 1 0 2 2 2 0 Peptidase C26 Arteri_env PF01606.16 gi|89255839|ref|YP_513201.1| - 0.083 12.8 0.1 0.16 11.8 0.1 1.4 1 0 0 1 1 1 0 Arterivirus envelope protein Lipase_GDSL PF00657.22 gi|89255840|ref|YP_513202.1| - 1.8e-08 34.6 0.1 2.3e-08 34.3 0.1 1.1 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase Lipase_GDSL_2 PF13472.6 gi|89255840|ref|YP_513202.1| - 1.3e-07 32.2 0.0 7e-07 29.8 0.0 1.9 2 0 0 2 2 2 1 GDSL-like Lipase/Acylhydrolase family Glyco_hydro_56 PF01630.18 gi|89255840|ref|YP_513202.1| - 0.017 14.2 0.0 0.025 13.6 0.0 1.2 1 0 0 1 1 1 0 Hyaluronidase HD_3 PF13023.6 gi|89255841|ref|YP_513203.1| - 1.6e-19 70.4 0.0 1.7e-19 70.3 0.0 1.0 1 0 0 1 1 1 1 HD domain HD_2 PF12917.7 gi|89255841|ref|YP_513203.1| - 8.2e-10 38.7 0.0 1e-09 38.4 0.0 1.1 1 0 0 1 1 1 1 HD containing hydrolase-like enzyme HD PF01966.22 gi|89255841|ref|YP_513203.1| - 0.00024 21.3 0.0 0.00031 21.0 0.0 1.2 1 0 0 1 1 1 1 HD domain FtsJ PF01728.19 gi|89255843|ref|YP_513205.1| - 1.4e-53 181.7 0.0 1.6e-53 181.5 0.0 1.0 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_31 PF13847.6 gi|89255843|ref|YP_513205.1| - 0.0002 21.2 0.6 0.0077 16.0 0.3 2.6 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|89255843|ref|YP_513205.1| - 0.018 15.7 0.1 0.4 11.4 0.0 2.7 1 1 1 2 2 2 0 Methyltransferase domain Peptidase_A8 PF01252.18 gi|89255845|ref|YP_513207.1| - 5e-39 133.8 10.7 5.8e-39 133.5 10.7 1.0 1 0 0 1 1 1 1 Signal peptidase (SPase) II PMT_2 PF13231.6 gi|89255845|ref|YP_513207.1| - 0.002 18.4 8.3 0.012 15.9 3.6 2.3 2 1 0 2 2 2 2 Dolichyl-phosphate-mannose-protein mannosyltransferase tRNA-synt_1 PF00133.22 gi|89255846|ref|YP_513208.1| - 4.7e-209 695.6 3.3 6e-209 695.2 3.3 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|89255846|ref|YP_513208.1| - 1.6e-24 86.6 2.2 3.6e-24 85.5 2.2 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|89255846|ref|YP_513208.1| - 3.8e-21 75.3 1.5 2.6e-10 39.6 0.0 3.7 3 0 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|89255846|ref|YP_513208.1| - 1.7e-10 40.8 0.0 1.4e-06 27.9 0.0 2.7 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.6 gi|89255846|ref|YP_513208.1| - 3.2e-07 30.0 0.0 6.8e-07 29.0 0.0 1.5 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1f PF01921.18 gi|89255846|ref|YP_513208.1| - 3.8e-07 29.4 0.0 1.3e-06 27.6 0.0 1.8 2 0 0 2 2 2 1 tRNA synthetases class I (K) zf-FPG_IleRS PF06827.14 gi|89255846|ref|YP_513208.1| - 3.6e-06 26.7 4.4 3.6e-06 26.7 4.4 2.5 2 0 0 2 2 2 1 Zinc finger found in FPG and IleRS NOG1_N PF17835.1 gi|89255846|ref|YP_513208.1| - 0.058 13.4 0.0 0.26 11.3 0.0 2.1 1 0 0 1 1 1 0 NOG1 N-terminal helical domain FAD_syn PF06574.12 gi|89255847|ref|YP_513209.1| - 6.2e-50 169.2 0.3 9.1e-50 168.6 0.3 1.2 1 0 0 1 1 1 1 FAD synthetase Flavokinase PF01687.17 gi|89255847|ref|YP_513209.1| - 2.7e-33 114.6 0.4 1.1e-32 112.7 0.2 1.9 2 0 0 2 2 2 1 Riboflavin kinase CTP_transf_like PF01467.26 gi|89255847|ref|YP_513209.1| - 0.001 19.3 0.4 0.027 14.7 0.4 2.5 1 1 0 1 1 1 1 Cytidylyltransferase-like Citrate_ly_lig PF08218.11 gi|89255847|ref|YP_513209.1| - 0.015 15.0 0.0 0.031 14.0 0.0 1.5 1 0 0 1 1 1 0 Citrate lyase ligase C-terminal domain Malic_M PF03949.15 gi|89255848|ref|YP_513210.1| - 1.2e-77 260.7 0.1 1.9e-77 260.1 0.1 1.3 1 0 0 1 1 1 1 Malic enzyme, NAD binding domain malic PF00390.19 gi|89255848|ref|YP_513210.1| - 4.6e-67 225.3 0.0 7.7e-67 224.6 0.0 1.4 1 0 0 1 1 1 1 Malic enzyme, N-terminal domain ELFV_dehydrog PF00208.21 gi|89255848|ref|YP_513210.1| - 0.014 15.2 0.1 0.032 14.0 0.1 1.6 2 0 0 2 2 2 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DUF3573 PF12097.8 gi|89255849|ref|YP_513211.1| - 7.6e-167 554.9 21.0 7.6e-167 554.9 21.0 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF3573) FlxA PF14282.6 gi|89255849|ref|YP_513211.1| - 0.045 13.7 4.9 0.081 12.9 4.9 1.4 1 0 0 1 1 1 0 FlxA-like protein YlqD PF11068.8 gi|89255849|ref|YP_513211.1| - 0.088 13.2 1.1 0.14 12.5 1.1 1.2 1 0 0 1 1 1 0 YlqD protein DDE_3 PF13358.6 gi|89255850|ref|YP_513212.1| - 8.3e-29 100.2 0.1 2.9e-28 98.4 0.0 1.8 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_29 PF13551.6 gi|89255850|ref|YP_513212.1| - 0.003 17.6 0.0 0.0074 16.3 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn helix HTH_Tnp_IS630 PF01710.16 gi|89255850|ref|YP_513212.1| - 0.0033 17.5 1.8 0.0083 16.2 0.8 2.2 2 1 0 2 2 2 1 Transposase HTH_40 PF14493.6 gi|89255850|ref|YP_513212.1| - 0.015 15.8 0.0 0.061 13.8 0.0 2.0 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_28 PF13518.6 gi|89255850|ref|YP_513212.1| - 0.023 14.8 0.0 0.067 13.3 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain CENP-B_N PF04218.13 gi|89255850|ref|YP_513212.1| - 0.082 12.5 0.0 0.9 9.2 0.0 2.5 3 0 0 3 3 3 0 CENP-B N-terminal DNA-binding domain HTH_23 PF13384.6 gi|89255850|ref|YP_513212.1| - 0.11 12.4 0.0 0.31 10.9 0.0 1.9 1 0 0 1 1 1 0 Homeodomain-like domain rve PF00665.26 gi|89255850|ref|YP_513212.1| - 0.14 12.4 0.0 0.25 11.6 0.0 1.4 1 0 0 1 1 1 0 Integrase core domain DDE_Tnp_1_2 PF13586.6 gi|89255851|ref|YP_513213.1| - 2.2e-13 50.4 0.0 3.9e-13 49.6 0.0 1.4 1 0 0 1 1 1 1 Transposase DDE domain Sua5_yciO_yrdC PF01300.18 gi|89255851|ref|YP_513213.1| - 6e-13 48.7 0.0 1.1e-12 47.8 0.0 1.4 1 0 0 1 1 1 1 Telomere recombination DDE_Tnp_1 PF01609.21 gi|89255851|ref|YP_513213.1| - 1.5e-11 44.4 2.0 1.1e-10 41.6 2.0 2.0 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 gi|89255851|ref|YP_513213.1| - 1.4e-07 31.6 0.0 2.4e-07 30.9 0.0 1.3 1 0 0 1 1 1 1 Transposase DDE domain DUF4096 PF13340.6 gi|89255851|ref|YP_513213.1| - 0.0098 16.1 0.0 0.019 15.2 0.0 1.5 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) UPF0029 PF01205.19 gi|89255852|ref|YP_513214.1| - 4.4e-29 100.9 0.0 6.3e-29 100.4 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein family UPF0029 DUF1949 PF09186.11 gi|89255852|ref|YP_513214.1| - 6.1e-05 22.8 0.0 9.5e-05 22.2 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1949) DUF4295 PF14128.6 gi|89255852|ref|YP_513214.1| - 0.15 11.9 0.7 0.3 10.9 0.7 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4295) MFS_1 PF07690.16 gi|89255853|ref|YP_513215.1| - 7.8e-50 169.8 46.4 4.1e-49 167.4 42.5 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_4 PF06779.14 gi|89255853|ref|YP_513215.1| - 0.0033 16.8 24.4 0.0048 16.2 24.4 1.2 1 0 0 1 1 1 1 Uncharacterised MFS-type transporter YbfB OATP PF03137.20 gi|89255853|ref|YP_513215.1| - 0.15 10.3 27.3 0.013 13.8 1.9 3.5 3 1 1 4 4 4 0 Organic Anion Transporter Polypeptide (OATP) family tRNA-synt_1g PF09334.11 gi|89255854|ref|YP_513216.1| - 6.1e-158 525.7 0.1 8.1e-158 525.2 0.1 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA_bind PF01588.20 gi|89255854|ref|YP_513216.1| - 1.1e-22 79.9 0.0 2.4e-22 78.9 0.0 1.6 1 0 0 1 1 1 1 Putative tRNA binding domain tRNA-synt_1 PF00133.22 gi|89255854|ref|YP_513216.1| - 4.5e-16 58.2 0.1 9e-11 40.7 0.0 3.2 3 0 0 3 3 3 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1e PF01406.19 gi|89255854|ref|YP_513216.1| - 3.4e-10 39.8 0.4 1.2e-05 24.8 0.0 2.8 3 0 0 3 3 3 2 tRNA synthetases class I (C) catalytic domain Anticodon_1 PF08264.13 gi|89255854|ref|YP_513216.1| - 1.7e-05 24.9 1.0 1.7e-05 24.9 1.0 1.9 2 0 0 2 2 2 1 Anticodon-binding domain of tRNA tRNA-synt_1f PF01921.18 gi|89255854|ref|YP_513216.1| - 0.00011 21.2 0.1 0.00032 19.7 0.0 1.7 2 0 0 2 2 2 1 tRNA synthetases class I (K) Med25_VWA PF11265.8 gi|89255854|ref|YP_513216.1| - 0.0081 16.0 0.0 0.89 9.3 0.0 2.4 2 0 0 2 2 2 1 Mediator complex subunit 25 von Willebrand factor type A Adenyl_transf PF04439.12 gi|89255854|ref|YP_513216.1| - 0.013 14.6 0.2 0.028 13.6 0.2 1.6 1 0 0 1 1 1 0 Streptomycin adenylyltransferase FMN_red PF03358.15 gi|89255855|ref|YP_513217.1| - 2.9e-25 88.8 0.0 3.7e-25 88.5 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|89255855|ref|YP_513217.1| - 0.028 14.1 0.0 0.045 13.4 0.0 1.3 1 1 0 1 1 1 0 Flavodoxin-like fold JmjC PF02373.22 gi|89255856|ref|YP_513218.1| - 0.01 16.2 0.0 0.01 16.2 0.0 1.1 1 0 0 1 1 1 0 JmjC domain, hydroxylase Cupin_2 PF07883.11 gi|89255856|ref|YP_513218.1| - 0.045 13.5 0.7 0.12 12.1 0.3 1.8 2 0 0 2 2 2 0 Cupin domain Neur_chan_LBD PF02931.23 gi|89255857|ref|YP_513219.1| - 5.6e-28 97.9 1.3 7.5e-28 97.4 1.3 1.1 1 0 0 1 1 1 1 Neurotransmitter-gated ion-channel ligand binding domain Peptidase_M50 PF02163.22 gi|89255858|ref|YP_513220.1| - 4.2e-11 42.6 12.1 3.5e-07 29.8 2.7 3.2 2 1 1 3 3 3 3 Peptidase family M50 Sigma70_r4_2 PF08281.12 gi|89255859|ref|YP_513221.1| - 0.0015 18.1 0.0 0.0029 17.2 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.6 gi|89255859|ref|YP_513221.1| - 0.0083 15.9 0.0 0.016 15.0 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain Orthopox_A47 PF06334.11 gi|89255859|ref|YP_513221.1| - 0.034 13.4 0.1 0.1 11.9 0.0 1.7 1 1 1 2 2 2 0 Orthopoxvirus A47 protein PS_Dcarbxylase PF02666.15 gi|89255860|ref|YP_513222.1| - 1.6e-54 184.5 0.1 1.9e-54 184.3 0.1 1.1 1 0 0 1 1 1 1 Phosphatidylserine decarboxylase NUDIX PF00293.28 gi|89255862|ref|YP_513224.1| - 4.8e-19 68.7 0.0 8.3e-19 67.9 0.0 1.4 1 0 0 1 1 1 1 NUDIX domain CTP_transf_like PF01467.26 gi|89255862|ref|YP_513224.1| - 3.6e-08 33.7 0.1 9.9e-08 32.3 0.1 1.8 1 1 0 1 1 1 1 Cytidylyltransferase-like Hexapep PF00132.24 gi|89255863|ref|YP_513225.1| - 3.4e-25 86.8 28.1 4.6e-08 32.5 6.3 5.4 3 1 2 5 5 5 5 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|89255863|ref|YP_513225.1| - 4.1e-25 89.0 0.0 6.4e-25 88.4 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain NTP_transferase PF00483.23 gi|89255863|ref|YP_513225.1| - 2e-13 50.5 0.1 2.4e-13 50.3 0.1 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase IspD PF01128.19 gi|89255863|ref|YP_513225.1| - 9.3e-12 45.2 0.4 1.4e-11 44.5 0.4 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Hexapep_2 PF14602.6 gi|89255863|ref|YP_513225.1| - 1.5e-10 40.7 30.9 3.6e-05 23.4 0.3 4.7 4 0 0 4 4 4 4 Hexapeptide repeat of succinyl-transferase CofC PF01983.16 gi|89255863|ref|YP_513225.1| - 4.7e-06 25.9 0.1 9.6e-06 24.9 0.1 1.4 1 0 0 1 1 1 1 Guanylyl transferase CofC like CTP_transf_3 PF02348.19 gi|89255863|ref|YP_513225.1| - 8.4e-06 25.9 0.2 1.6e-05 24.9 0.1 1.4 1 1 0 1 1 1 1 Cytidylyltransferase Fucokinase PF07959.12 gi|89255863|ref|YP_513225.1| - 0.0023 16.9 1.8 0.008 15.2 0.7 2.0 1 1 1 2 2 2 1 L-fucokinase DUF4954 PF16314.5 gi|89255863|ref|YP_513225.1| - 0.0027 15.9 4.5 0.0049 15.1 4.5 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4954) DUF2064 PF09837.9 gi|89255863|ref|YP_513225.1| - 0.011 15.6 0.0 0.02 14.7 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2064) Bactofilin PF04519.13 gi|89255863|ref|YP_513225.1| - 0.058 13.7 0.8 0.058 13.7 0.8 2.7 2 1 1 3 3 3 0 Polymer-forming cytoskeletal SIS PF01380.22 gi|89255864|ref|YP_513226.1| - 2e-55 186.2 0.6 3.8e-28 97.9 0.1 3.1 3 0 0 3 3 3 2 SIS domain GATase_6 PF13522.6 gi|89255864|ref|YP_513226.1| - 3.5e-20 72.5 0.0 7e-20 71.6 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|89255864|ref|YP_513226.1| - 4.3e-15 55.7 0.0 1.6e-14 53.9 0.0 2.0 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_4 PF13230.6 gi|89255864|ref|YP_513226.1| - 0.0002 20.4 0.0 0.00033 19.6 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Il2rg PF15874.5 gi|89255864|ref|YP_513226.1| - 0.098 12.9 0.2 22 5.4 0.1 2.7 2 0 0 2 2 2 0 Putative Interleukin 2 receptor, gamma chain Acetyltransf_3 PF13302.7 gi|89255865|ref|YP_513227.1| - 1.1e-13 52.0 0.0 1.3e-13 51.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Ribosomal_S21 PF01165.20 gi|89255866|ref|YP_513228.1| - 6.7e-17 61.0 5.5 8.4e-17 60.6 5.5 1.1 1 0 0 1 1 1 1 Ribosomal protein S21 CSD PF00313.22 gi|89255867|ref|YP_513229.1| - 5.4e-25 87.0 1.1 5.9e-25 86.9 1.1 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain OB_RNB PF08206.11 gi|89255867|ref|YP_513229.1| - 4e-05 23.2 0.3 4.7e-05 23.0 0.3 1.4 1 1 0 1 1 1 1 Ribonuclease B OB domain S1_2 PF13509.6 gi|89255867|ref|YP_513229.1| - 0.096 12.8 0.0 0.12 12.4 0.0 1.2 1 0 0 1 1 1 0 S1 domain Rho_RNA_bind PF07497.12 gi|89255867|ref|YP_513229.1| - 0.11 12.4 0.0 0.12 12.2 0.0 1.2 1 0 0 1 1 1 0 Rho termination factor, RNA-binding domain MazG PF03819.17 gi|89255868|ref|YP_513230.1| - 6.1e-09 35.9 1.6 9.7e-09 35.3 1.6 1.3 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain dUTPase_2 PF08761.11 gi|89255868|ref|YP_513230.1| - 0.002 18.3 2.3 0.003 17.8 2.3 1.3 1 1 0 1 1 1 1 dUTPase NAS PF03059.16 gi|89255868|ref|YP_513230.1| - 0.0044 16.4 0.4 0.0053 16.1 0.4 1.0 1 0 0 1 1 1 1 Nicotianamine synthase protein MazG-like PF12643.7 gi|89255868|ref|YP_513230.1| - 0.053 13.8 2.5 0.14 12.4 1.9 2.0 1 1 1 2 2 2 0 MazG-like family MHC_II_beta PF00969.19 gi|89255868|ref|YP_513230.1| - 0.13 12.4 0.1 0.54 10.4 0.1 2.0 2 0 0 2 2 2 0 Class II histocompatibility antigen, beta domain Peptidase_M24 PF00557.24 gi|89255869|ref|YP_513231.1| - 1.5e-55 188.2 0.9 1.7e-55 188.0 0.9 1.0 1 0 0 1 1 1 1 Metallopeptidase family M24 KfrA_N PF11740.8 gi|89255870|ref|YP_513232.1| - 0.014 16.1 0.4 0.038 14.7 0.4 1.9 1 1 0 1 1 1 0 Plasmid replication region DNA-binding N-term CENP-H PF05837.12 gi|89255870|ref|YP_513232.1| - 0.45 11.0 9.4 0.16 12.3 5.8 2.0 2 0 0 2 2 2 0 Centromere protein H (CENP-H) Nup54 PF13874.6 gi|89255870|ref|YP_513232.1| - 0.99 9.5 7.5 0.52 10.4 4.4 2.0 1 1 0 2 2 2 0 Nucleoporin complex subunit 54 YabA PF06156.13 gi|89255870|ref|YP_513232.1| - 2.6 8.7 10.5 0.83 10.3 6.5 2.3 1 1 1 2 2 2 0 Initiation control protein YabA FAM76 PF16046.5 gi|89255870|ref|YP_513232.1| - 3.4 6.9 9.0 3 7.1 7.9 1.5 1 1 0 1 1 1 0 FAM76 protein TSC22 PF01166.18 gi|89255870|ref|YP_513232.1| - 5.4 7.4 14.7 0.41 11.0 1.1 3.7 3 1 1 4 4 4 0 TSC-22/dip/bun family APG6_N PF17675.1 gi|89255870|ref|YP_513232.1| - 6.6 7.3 15.0 18 5.8 14.9 1.9 1 1 0 1 1 1 0 Apg6 coiled-coil region bZIP_1 PF00170.21 gi|89255870|ref|YP_513232.1| - 7.3 6.8 11.2 34 4.6 6.5 3.4 2 1 0 2 2 2 0 bZIP transcription factor PLDc_2 PF13091.6 gi|89255871|ref|YP_513233.1| - 1.1e-07 31.8 0.1 2.5e-07 30.7 0.1 1.6 1 0 0 1 1 1 1 PLD-like domain APOBEC3 PF18771.1 gi|89255871|ref|YP_513233.1| - 0.009 16.1 0.2 0.013 15.6 0.2 1.3 1 0 0 1 1 1 1 APOBEC3 Mrr_N PF14338.6 gi|89255871|ref|YP_513233.1| - 0.13 12.5 0.5 8.9 6.5 0.0 2.8 2 1 1 3 3 3 0 Mrr N-terminal domain MKT1_N PF12247.8 gi|89255871|ref|YP_513233.1| - 0.13 12.6 0.2 0.28 11.6 0.2 1.7 1 1 0 1 1 1 0 Temperature dependent protein affecting M2 dsRNA replication DNA_topoisoIV PF00521.20 gi|89255872|ref|YP_513234.1| - 7.9e-136 453.3 3.1 9.9e-136 453.0 3.1 1.1 1 0 0 1 1 1 1 DNA gyrase/topoisomerase IV, subunit A DNA_gyraseA_C PF03989.13 gi|89255872|ref|YP_513234.1| - 9.8e-09 34.6 0.6 0.00058 19.3 0.2 3.6 3 0 0 3 3 3 3 DNA gyrase C-terminal domain, beta-propeller SCAI PF12070.8 gi|89255872|ref|YP_513234.1| - 0.27 10.1 3.7 2.4 6.9 0.5 2.1 2 0 0 2 2 2 0 Protein SCAI PNP_UDP_1 PF01048.20 gi|89255873|ref|YP_513235.1| - 1.1e-47 162.3 0.2 1.2e-47 162.2 0.2 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily DUF3377 PF11857.8 gi|89255874|ref|YP_513236.1| - 0.12 12.3 0.2 0.12 12.3 0.2 3.6 4 2 0 4 4 4 0 Domain of unknown function (DUF3377) BNR_2 PF13088.6 gi|89255875|ref|YP_513237.1| - 5.9e-51 173.4 0.5 7.6e-51 173.0 0.5 1.0 1 0 0 1 1 1 1 BNR repeat-like domain BNR_3 PF13859.6 gi|89255875|ref|YP_513237.1| - 0.001 18.5 0.0 0.0032 16.8 0.0 1.6 1 1 0 2 2 2 1 BNR repeat-like domain CBM65_1 PF18259.1 gi|89255875|ref|YP_513237.1| - 0.0023 18.0 1.5 0.086 13.0 0.0 3.1 2 2 0 2 2 2 1 Carbohydrate binding module 65 domain 1 Glyco_hydro_43 PF04616.14 gi|89255875|ref|YP_513237.1| - 0.012 14.9 1.6 0.31 10.3 0.3 2.4 1 1 1 2 2 2 0 Glycosyl hydrolases family 43 DUF4185 PF13810.6 gi|89255875|ref|YP_513237.1| - 0.043 13.1 2.1 0.6 9.3 0.2 2.7 2 1 1 3 3 3 0 Domain of unknown function (DUF4185) BNR PF02012.20 gi|89255875|ref|YP_513237.1| - 0.087 12.9 0.2 0.087 12.9 0.2 3.5 3 0 0 3 3 3 0 BNR/Asp-box repeat SLT PF01464.20 gi|89255876|ref|YP_513238.1| - 3.8e-22 78.2 0.2 1.1e-21 76.6 0.2 1.8 1 0 0 1 1 1 1 Transglycosylase SLT domain TPR_6 PF13174.6 gi|89255876|ref|YP_513238.1| - 0.00014 22.3 0.3 0.0086 16.6 0.1 3.5 2 0 0 2 2 2 1 Tetratricopeptide repeat SLT_L PF14718.6 gi|89255876|ref|YP_513238.1| - 0.0019 18.3 0.5 0.0019 18.3 0.5 3.1 3 0 0 3 3 3 1 Soluble lytic murein transglycosylase L domain TPR_19 PF14559.6 gi|89255876|ref|YP_513238.1| - 0.007 16.8 2.6 0.017 15.6 0.2 2.9 3 0 0 3 3 3 1 Tetratricopeptide repeat DUF463 PF04317.12 gi|89255876|ref|YP_513238.1| - 0.036 13.0 5.6 0.059 12.3 5.6 1.2 1 0 0 1 1 1 0 YcjX-like family, DUF463 BTAD PF03704.17 gi|89255876|ref|YP_513238.1| - 0.046 14.2 0.0 4.7 7.6 0.0 2.5 2 0 0 2 2 2 0 Bacterial transcriptional activator domain ANAPC3 PF12895.7 gi|89255876|ref|YP_513238.1| - 0.36 11.1 6.8 0.15 12.3 1.4 3.0 2 0 0 2 2 2 0 Anaphase-promoting complex, cyclosome, subunit 3 OMP_b-brl PF13505.6 gi|89255877|ref|YP_513239.1| - 0.0012 19.0 3.5 0.0015 18.7 3.5 1.0 1 0 0 1 1 1 1 Outer membrane protein beta-barrel domain DDE_Tnp_1_2 PF13586.6 gi|89255878|ref|YP_513240.1| - 1.1e-13 51.3 0.0 2e-13 50.5 0.0 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|89255878|ref|YP_513240.1| - 4.9e-12 46.0 2.0 4.4e-11 42.8 2.0 2.0 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 gi|89255878|ref|YP_513240.1| - 7.6e-08 32.5 0.0 1.1e-07 32.0 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF4096 PF13340.6 gi|89255878|ref|YP_513240.1| - 0.0057 16.9 0.0 0.012 15.8 0.0 1.6 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) DUF2254 PF10011.9 gi|89255880|ref|YP_513242.1| - 5.9e-23 81.3 3.8 6.5e-23 81.1 3.8 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2254) DUF996 PF06195.13 gi|89255880|ref|YP_513242.1| - 0.024 14.9 5.6 0.033 14.5 2.5 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF996) DUF2254 PF10011.9 gi|89255881|ref|YP_513243.1| - 6.8e-20 71.2 0.0 7.4e-20 71.1 0.0 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2254) DNA_pol3_alpha PF07733.12 gi|89255882|ref|YP_513244.1| - 9e-101 336.8 0.0 4.9e-100 334.4 0.0 2.3 3 0 0 3 3 3 1 Bacterial DNA polymerase III alpha NTPase domain DNA_pol3_finger PF17657.1 gi|89255882|ref|YP_513244.1| - 1.5e-65 219.6 0.3 3.8e-65 218.3 0.3 1.7 1 0 0 1 1 1 1 Bacterial DNA polymerase III alpha subunit finger domain PHP PF02811.19 gi|89255882|ref|YP_513244.1| - 8.5e-35 120.5 0.1 2.6e-34 118.9 0.1 1.9 1 0 0 1 1 1 1 PHP domain HHH_6 PF14579.6 gi|89255882|ref|YP_513244.1| - 6.4e-25 87.2 0.0 3.5e-24 84.9 0.0 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix motif tRNA_anti-codon PF01336.25 gi|89255882|ref|YP_513244.1| - 0.00034 20.5 0.5 0.001 19.0 0.2 2.0 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain Pep_deformylase PF01327.21 gi|89255883|ref|YP_513245.1| - 1.8e-36 125.2 0.0 2.3e-36 124.8 0.0 1.1 1 0 0 1 1 1 1 Polypeptide deformylase Troponin PF00992.20 gi|89255883|ref|YP_513245.1| - 0.03 14.6 0.2 0.056 13.8 0.2 1.4 1 0 0 1 1 1 0 Troponin HD_5 PF13487.6 gi|89255883|ref|YP_513245.1| - 0.056 13.7 0.1 0.2 11.9 0.0 1.9 2 0 0 2 2 2 0 HD domain zf-RAG1 PF10426.9 gi|89255883|ref|YP_513245.1| - 1.4 9.1 6.1 8.4 6.6 0.3 2.3 2 0 0 2 2 2 0 Recombination-activating protein 1 zinc-finger domain MacB_PCD PF12704.7 gi|89255884|ref|YP_513246.1| - 2e-19 70.8 1.5 2e-19 70.8 1.5 2.3 3 0 0 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|89255884|ref|YP_513246.1| - 2.6e-14 53.5 17.5 1.7e-13 50.8 7.9 3.5 3 0 0 3 3 3 2 FtsX-like permease family ABC_tran PF00005.27 gi|89255885|ref|YP_513247.1| - 4.1e-34 118.0 0.0 5.4e-34 117.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|89255885|ref|YP_513247.1| - 6.8e-07 28.9 0.8 2.4e-05 23.9 0.8 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|89255885|ref|YP_513247.1| - 0.0017 18.3 0.1 0.0036 17.2 0.1 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_29 PF13555.6 gi|89255885|ref|YP_513247.1| - 0.009 15.7 0.4 0.019 14.7 0.4 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_18 PF13238.6 gi|89255885|ref|YP_513247.1| - 0.0099 16.4 0.7 0.1 13.1 0.7 2.2 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|89255885|ref|YP_513247.1| - 0.01 16.1 1.3 0.48 10.7 1.3 2.2 1 1 0 1 1 1 0 AAA domain Arf PF00025.21 gi|89255885|ref|YP_513247.1| - 0.023 14.2 0.3 0.042 13.3 0.3 1.4 1 0 0 1 1 1 0 ADP-ribosylation factor family AAA_16 PF13191.6 gi|89255885|ref|YP_513247.1| - 0.024 15.0 0.4 0.062 13.7 0.4 1.7 1 1 0 1 1 1 0 AAA ATPase domain MMR_HSR1 PF01926.23 gi|89255885|ref|YP_513247.1| - 0.029 14.4 0.1 0.072 13.2 0.1 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase FtsK_SpoIIIE PF01580.18 gi|89255885|ref|YP_513247.1| - 0.046 13.1 0.1 0.095 12.0 0.1 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_21 PF13304.6 gi|89255885|ref|YP_513247.1| - 0.056 13.3 2.3 1.9 8.2 1.1 2.1 1 1 0 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system cobW PF02492.19 gi|89255885|ref|YP_513247.1| - 0.056 13.0 0.1 0.44 10.1 0.1 2.1 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain G-alpha PF00503.20 gi|89255885|ref|YP_513247.1| - 0.09 11.9 0.0 0.092 11.9 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit AAA_33 PF13671.6 gi|89255885|ref|YP_513247.1| - 0.11 12.7 0.5 0.39 10.9 0.5 2.0 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|89255885|ref|YP_513247.1| - 0.11 13.0 0.7 0.23 12.0 0.3 1.7 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|89255885|ref|YP_513247.1| - 0.13 12.5 0.0 0.65 10.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain OKR_DC_1 PF01276.20 gi|89255886|ref|YP_513248.1| - 1.5e-165 551.0 0.3 2e-165 550.6 0.3 1.1 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, major domain OKR_DC_1_C PF03711.15 gi|89255886|ref|YP_513248.1| - 8e-41 139.4 0.2 2.3e-40 137.9 0.2 1.9 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, C-terminal domain OKR_DC_1_N PF03709.15 gi|89255886|ref|YP_513248.1| - 1.5e-14 54.2 0.3 3.2e-14 53.1 0.3 1.6 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, N-terminal domain MerR_1 PF13411.6 gi|89255886|ref|YP_513248.1| - 0.095 12.8 0.0 0.32 11.1 0.0 1.8 1 0 0 1 1 1 0 MerR HTH family regulatory protein GCV_T PF01571.21 gi|89255887|ref|YP_513249.1| - 7.4e-88 294.2 0.1 8.8e-88 294.0 0.1 1.1 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.11 gi|89255887|ref|YP_513249.1| - 1.4e-12 47.3 0.0 2.9e-12 46.3 0.0 1.5 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain POPLD PF08170.12 gi|89255887|ref|YP_513249.1| - 0.00038 20.7 0.0 0.00067 20.0 0.0 1.4 1 0 0 1 1 1 1 POPLD (NUC188) domain SoxG PF04268.12 gi|89255887|ref|YP_513249.1| - 0.018 15.2 0.1 2.5 8.2 0.1 2.4 1 1 1 2 2 2 0 Sarcosine oxidase, gamma subunit family TrmE_N PF10396.9 gi|89255887|ref|YP_513249.1| - 0.052 13.9 0.0 0.3 11.4 0.0 2.1 2 1 0 2 2 2 0 GTP-binding protein TrmE N-terminus GCV_H PF01597.19 gi|89255888|ref|YP_513250.1| - 1.2e-44 151.1 0.1 1.4e-44 150.9 0.1 1.0 1 0 0 1 1 1 1 Glycine cleavage H-protein Biotin_lipoyl PF00364.22 gi|89255888|ref|YP_513250.1| - 4.2e-05 23.3 0.9 0.00035 20.3 0.2 2.1 2 0 0 2 2 2 1 Biotin-requiring enzyme RnfC_N PF13375.6 gi|89255888|ref|YP_513250.1| - 0.083 12.8 0.0 0.16 11.9 0.0 1.5 2 0 0 2 2 2 0 RnfC Barrel sandwich hybrid domain NTS_2 PF15448.6 gi|89255888|ref|YP_513250.1| - 0.087 13.2 0.4 34 4.9 0.1 3.2 3 0 0 3 3 3 0 N-terminal segments of P. falciparum erythrocyte membrane protein GDC-P PF02347.16 gi|89255889|ref|YP_513251.1| - 1.1e-127 426.5 0.8 1.2e-127 426.3 0.8 1.0 1 0 0 1 1 1 1 Glycine cleavage system P-protein Aminotran_5 PF00266.19 gi|89255889|ref|YP_513251.1| - 4.4e-07 29.2 2.6 1.6e-06 27.3 2.0 2.2 1 1 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|89255889|ref|YP_513251.1| - 3.6e-06 25.8 1.3 4.8e-06 25.4 0.2 1.6 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme DUF4332 PF14229.6 gi|89255889|ref|YP_513251.1| - 0.025 14.8 0.2 0.26 11.5 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4332) GDC-P PF02347.16 gi|89255890|ref|YP_513252.1| - 9.4e-16 57.7 0.0 3.2e-15 55.9 0.0 1.6 2 0 0 2 2 2 1 Glycine cleavage system P-protein Aminotran_5 PF00266.19 gi|89255890|ref|YP_513252.1| - 4.1e-10 39.2 0.0 5.7e-10 38.7 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|89255890|ref|YP_513252.1| - 5e-05 22.7 0.0 0.00089 18.5 0.0 2.1 2 0 0 2 2 2 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|89255890|ref|YP_513252.1| - 0.0012 18.2 0.0 0.0016 17.8 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Shikimate_dh_N PF08501.11 gi|89255891|ref|YP_513253.1| - 1.7e-07 31.4 0.0 3.6e-07 30.3 0.0 1.5 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain Shikimate_DH PF01488.20 gi|89255891|ref|YP_513253.1| - 0.0028 17.7 0.0 0.0054 16.8 0.0 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase TbpB_C PF17483.2 gi|89255891|ref|YP_513253.1| - 0.087 13.2 0.0 0.2 12.0 0.0 1.6 1 0 0 1 1 1 0 C-lobe handle domain of Tf-binding protein B Alpha-amylase PF00128.24 gi|89255892|ref|YP_513254.1| - 1.9e-17 63.9 1.8 1.1e-07 31.8 0.2 3.4 2 1 0 3 3 3 2 Alpha amylase, catalytic domain CBM_48 PF02922.18 gi|89255892|ref|YP_513254.1| - 3.9e-06 27.1 1.2 1.3e-05 25.4 0.0 2.6 2 0 0 2 2 2 1 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DUF3372 PF11852.8 gi|89255892|ref|YP_513254.1| - 7.8e-06 25.5 0.0 1.6e-05 24.4 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF3372) CdiA_C PF18451.1 gi|89255892|ref|YP_513254.1| - 0.15 12.3 1.6 0.43 10.8 0.3 2.5 2 0 0 2 2 2 0 Contact-dependent growth inhibition CdiA C-terminal domain Alpha-amylase_C PF02806.18 gi|89255893|ref|YP_513255.1| - 4.3e-23 81.6 0.0 1.9e-22 79.5 0.0 2.1 2 0 0 2 2 2 1 Alpha amylase, C-terminal all-beta domain CBM_48 PF02922.18 gi|89255893|ref|YP_513255.1| - 3.7e-16 59.2 0.4 1e-15 57.8 0.4 1.9 1 0 0 1 1 1 1 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Alpha-amylase PF00128.24 gi|89255893|ref|YP_513255.1| - 3.4e-13 49.9 6.0 8.2e-10 38.7 0.4 3.4 2 1 2 4 4 4 2 Alpha amylase, catalytic domain AMPK1_CBM PF16561.5 gi|89255893|ref|YP_513255.1| - 0.066 13.4 1.7 0.11 12.8 0.2 2.1 2 0 0 2 2 2 0 Glycogen recognition site of AMP-activated protein kinase PGM_PMM_I PF02878.16 gi|89255894|ref|YP_513256.1| - 1.7e-35 121.8 0.2 4e-35 120.5 0.1 1.7 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_III PF02880.16 gi|89255894|ref|YP_513256.1| - 6.5e-32 110.1 0.0 1.1e-31 109.4 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_II PF02879.16 gi|89255894|ref|YP_513256.1| - 1.4e-13 51.3 0.1 3.9e-13 49.9 0.1 1.8 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.20 gi|89255894|ref|YP_513256.1| - 3.3e-07 30.4 0.0 8.3e-07 29.1 0.0 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain SnoaL PF07366.12 gi|89255894|ref|YP_513256.1| - 0.073 12.9 0.1 13 5.6 0.1 3.0 2 1 0 2 2 2 0 SnoaL-like polyketide cyclase NTP_transferase PF00483.23 gi|89255895|ref|YP_513257.1| - 2.2e-66 224.0 0.0 2.7e-66 223.7 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|89255895|ref|YP_513257.1| - 1.4e-08 35.3 0.0 2.1e-08 34.7 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Fucokinase PF07959.12 gi|89255895|ref|YP_513257.1| - 0.00097 18.2 0.1 0.0015 17.5 0.1 1.3 1 0 0 1 1 1 1 L-fucokinase Hexapep PF00132.24 gi|89255895|ref|YP_513257.1| - 0.0065 16.2 3.3 0.029 14.1 0.2 2.4 1 1 1 2 2 2 1 Bacterial transferase hexapeptide (six repeats) Glyco_transf_5 PF08323.11 gi|89255896|ref|YP_513258.1| - 4.5e-75 252.5 0.0 1.6e-74 250.6 0.0 1.8 2 0 0 2 2 2 1 Starch synthase catalytic domain Glycos_transf_1 PF00534.20 gi|89255896|ref|YP_513258.1| - 1.2e-16 60.7 0.0 2.1e-16 59.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|89255896|ref|YP_513258.1| - 1.7e-08 34.6 0.0 7.1e-08 32.6 0.0 2.0 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.6 gi|89255896|ref|YP_513258.1| - 8.1e-08 32.8 0.0 1.6e-07 31.8 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|89255896|ref|YP_513258.1| - 3.4e-05 24.3 0.0 0.0001 22.8 0.0 1.9 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain RNA_GG_bind PF10258.9 gi|89255896|ref|YP_513258.1| - 0.13 12.3 0.1 0.3 11.2 0.1 1.6 1 0 0 1 1 1 0 PHAX RNA-binding domain Phosphorylase PF00343.20 gi|89255897|ref|YP_513259.1| - 1.1e-252 840.5 9.6 1.6e-252 839.9 9.6 1.3 1 0 0 1 1 1 1 Carbohydrate phosphorylase Cullin_binding PF03556.15 gi|89255897|ref|YP_513259.1| - 0.16 12.4 1.4 1.8 9.0 0.1 2.7 2 0 0 2 2 2 0 Cullin binding Glyco_hydro_77 PF02446.17 gi|89255898|ref|YP_513260.1| - 8.6e-147 489.8 6.7 1e-146 489.5 6.7 1.0 1 0 0 1 1 1 1 4-alpha-glucanotransferase tRNA-synt_2e PF02091.15 gi|89255899|ref|YP_513261.1| - 1.4e-148 493.6 0.1 1.6e-148 493.4 0.1 1.0 1 0 0 1 1 1 1 Glycyl-tRNA synthetase alpha subunit Mur_ligase_M PF08245.12 gi|89255900|ref|YP_513262.1| - 7.4e-44 150.0 0.4 7.4e-44 150.0 0.4 1.8 2 0 0 2 2 2 1 Mur ligase middle domain Mur_ligase_C PF02875.21 gi|89255900|ref|YP_513262.1| - 1.7e-22 79.5 0.0 1.2e-21 76.8 0.0 2.5 2 0 0 2 2 2 1 Mur ligase family, glutamate ligase domain Mur_ligase PF01225.25 gi|89255900|ref|YP_513262.1| - 8.4e-07 29.2 0.0 2.5e-06 27.7 0.0 1.9 1 0 0 1 1 1 1 Mur ligase family, catalytic domain Corona_6B_7B PF03262.13 gi|89255900|ref|YP_513262.1| - 0.038 13.4 0.1 0.068 12.6 0.1 1.3 1 0 0 1 1 1 0 Coronavirus 6B/7B protein DUF4156 PF13698.6 gi|89255901|ref|YP_513263.1| - 9.9e-24 83.5 1.5 1.2e-23 83.3 1.5 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4156) Mur_ligase_M PF08245.12 gi|89255902|ref|YP_513264.1| - 6.8e-38 130.6 0.9 6e-37 127.5 0.0 2.5 2 1 1 3 3 3 1 Mur ligase middle domain Mur_ligase_C PF02875.21 gi|89255902|ref|YP_513264.1| - 7.9e-10 38.9 0.0 2.6e-09 37.2 0.0 1.9 1 0 0 1 1 1 1 Mur ligase family, glutamate ligase domain Mur_ligase PF01225.25 gi|89255902|ref|YP_513264.1| - 3.3e-05 24.1 0.0 8e-05 22.9 0.0 1.7 1 0 0 1 1 1 1 Mur ligase family, catalytic domain YonK PF09642.10 gi|89255902|ref|YP_513264.1| - 0.068 13.3 0.2 0.34 11.1 0.2 2.2 2 0 0 2 2 2 0 YonK protein Semialdhyde_dhC PF02774.18 gi|89255904|ref|YP_513266.1| - 1.1e-45 156.0 0.0 1.4e-45 155.6 0.0 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain Semialdhyde_dh PF01118.24 gi|89255904|ref|YP_513266.1| - 4.5e-13 49.7 0.0 1.3e-12 48.2 0.0 1.8 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain Gp_dh_C PF02800.20 gi|89255904|ref|YP_513266.1| - 0.00017 21.2 0.1 0.00032 20.3 0.1 1.4 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain PALP PF00291.25 gi|89255905|ref|YP_513267.1| - 5.8e-25 88.3 0.0 7.5e-25 87.9 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Thr_synth_N PF14821.6 gi|89255905|ref|YP_513267.1| - 4.1e-16 59.0 0.0 7.9e-16 58.0 0.0 1.5 1 0 0 1 1 1 1 Threonine synthase N terminus IL6 PF00489.17 gi|89255905|ref|YP_513267.1| - 0.015 14.9 0.0 0.034 13.7 0.0 1.5 1 0 0 1 1 1 0 Interleukin-6/G-CSF/MGF family AdoMet_dc PF02675.15 gi|89255906|ref|YP_513268.1| - 2.2e-35 121.1 0.0 3.3e-35 120.5 0.0 1.3 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase DUF2536 PF10750.9 gi|89255906|ref|YP_513268.1| - 0.053 13.4 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2536) Spermine_synth PF01564.17 gi|89255907|ref|YP_513269.1| - 3.8e-55 186.2 0.0 5.7e-55 185.6 0.0 1.2 1 0 0 1 1 1 1 Spermine/spermidine synthase domain Spermine_synt_N PF17284.2 gi|89255907|ref|YP_513269.1| - 2.5e-15 56.1 0.6 5e-15 55.1 0.6 1.5 1 0 0 1 1 1 1 Spermidine synthase tetramerisation domain Methyltransf_25 PF13649.6 gi|89255907|ref|YP_513269.1| - 0.00015 22.4 0.0 0.00029 21.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_PK PF05891.12 gi|89255907|ref|YP_513269.1| - 0.00027 20.5 0.0 0.00036 20.1 0.0 1.2 1 0 0 1 1 1 1 AdoMet dependent proline di-methyltransferase MTS PF05175.14 gi|89255907|ref|YP_513269.1| - 0.00076 19.1 0.0 0.0019 17.8 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase small domain Cons_hypoth95 PF03602.15 gi|89255907|ref|YP_513269.1| - 0.012 15.3 0.0 0.1 12.3 0.0 2.1 1 1 1 2 2 2 0 Conserved hypothetical protein 95 Methyltransf_12 PF08242.12 gi|89255907|ref|YP_513269.1| - 0.022 15.5 0.0 0.065 14.0 0.0 1.8 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_11 PF08241.12 gi|89255907|ref|YP_513269.1| - 0.068 13.8 0.0 0.16 12.7 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_31 PF13847.6 gi|89255907|ref|YP_513269.1| - 0.074 12.9 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Orn_Arg_deC_N PF02784.16 gi|89255908|ref|YP_513270.1| - 4.3e-26 91.8 0.0 5.9e-26 91.3 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain PAD_porph PF04371.15 gi|89255909|ref|YP_513271.1| - 1.7e-90 303.6 1.4 1.9e-90 303.4 1.4 1.0 1 0 0 1 1 1 1 Porphyromonas-type peptidyl-arginine deiminase Aida_N PF08910.10 gi|89255909|ref|YP_513271.1| - 0.11 12.9 0.1 2.1 8.8 0.0 2.3 2 0 0 2 2 2 0 Aida N-terminus DDE_3 PF13358.6 gi|89255910|ref|YP_513272.1| - 9.9e-30 103.2 0.2 3.2e-29 101.6 0.0 1.8 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.16 gi|89255910|ref|YP_513272.1| - 0.0029 17.6 1.5 0.0084 16.2 0.6 2.3 2 1 0 2 2 2 1 Transposase HTH_29 PF13551.6 gi|89255910|ref|YP_513272.1| - 0.0033 17.4 0.0 0.008 16.2 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn helix HTH_40 PF14493.6 gi|89255910|ref|YP_513272.1| - 0.011 16.2 0.1 0.069 13.6 0.0 2.3 3 1 0 3 3 3 0 Helix-turn-helix domain HTH_28 PF13518.6 gi|89255910|ref|YP_513272.1| - 0.026 14.6 0.0 0.073 13.2 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain CENP-B_N PF04218.13 gi|89255910|ref|YP_513272.1| - 0.097 12.3 0.0 0.98 9.1 0.0 2.5 3 0 0 3 3 3 0 CENP-B N-terminal DNA-binding domain HTH_23 PF13384.6 gi|89255910|ref|YP_513272.1| - 0.12 12.2 0.0 0.34 10.8 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain rve PF00665.26 gi|89255910|ref|YP_513272.1| - 0.15 12.3 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 Integrase core domain DDE_Tnp_ISAZ013 PF07592.11 gi|89255910|ref|YP_513272.1| - 0.17 10.9 0.3 1.1 8.1 0.1 2.0 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain CN_hydrolase PF00795.22 gi|89255911|ref|YP_513273.1| - 5.2e-07 29.3 0.0 5.6e-07 29.2 0.0 1.0 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase CN_hydrolase PF00795.22 gi|89255912|ref|YP_513274.1| - 2.2e-13 50.1 0.0 2.5e-13 50.0 0.0 1.0 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase Metallophos PF00149.28 gi|89255913|ref|YP_513275.1| - 3.7e-12 47.2 1.8 3.7e-12 47.2 1.8 1.4 2 0 0 2 2 2 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|89255913|ref|YP_513275.1| - 8.1e-06 26.1 0.7 2.4e-05 24.6 0.7 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Pribosyltran PF00156.27 gi|89255914|ref|YP_513276.1| - 1.1e-15 57.5 0.1 1.5e-15 57.1 0.1 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.6 gi|89255914|ref|YP_513276.1| - 0.1 12.1 0.1 0.15 11.5 0.1 1.2 1 0 0 1 1 1 0 Phosphoribosyl transferase Mur_ligase_M PF08245.12 gi|89255915|ref|YP_513277.1| - 1.8e-25 90.1 0.2 3.2e-25 89.3 0.2 1.4 1 0 0 1 1 1 1 Mur ligase middle domain Mur_ligase PF01225.25 gi|89255915|ref|YP_513277.1| - 3.2e-16 59.4 0.0 6.4e-16 58.5 0.0 1.5 1 0 0 1 1 1 1 Mur ligase family, catalytic domain Mur_ligase_C PF02875.21 gi|89255915|ref|YP_513277.1| - 1.7e-11 44.2 0.1 6.6e-10 39.1 0.1 2.6 2 0 0 2 2 2 1 Mur ligase family, glutamate ligase domain SRA1 PF07304.11 gi|89255915|ref|YP_513277.1| - 0.018 14.8 0.7 0.077 12.8 0.2 1.9 1 1 1 2 2 2 0 Steroid receptor RNA activator (SRA1) CbiA PF01656.23 gi|89255915|ref|YP_513277.1| - 0.045 13.8 1.0 11 6.1 0.0 2.8 2 2 1 3 3 3 0 CobQ/CobB/MinD/ParA nucleotide binding domain SpoU_methylase PF00588.19 gi|89255916|ref|YP_513278.1| - 6.9e-24 84.6 0.1 1.4e-23 83.6 0.0 1.5 2 0 0 2 2 2 1 SpoU rRNA Methylase family SpoU_sub_bind PF08032.12 gi|89255916|ref|YP_513278.1| - 1.4e-07 31.7 0.1 5.6e-07 29.8 0.2 1.9 2 0 0 2 2 2 1 RNA 2'-O ribose methyltransferase substrate binding DAHP_snth_FXD PF18152.1 gi|89255916|ref|YP_513278.1| - 0.038 13.8 0.2 0.63 9.9 0.1 2.5 2 0 0 2 2 2 0 DAHP synthase ferredoxin-like domain DDE_3 PF13358.6 gi|89255917|ref|YP_513279.1| - 2.3e-30 105.3 0.1 7.9e-30 103.5 0.0 1.8 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.16 gi|89255917|ref|YP_513279.1| - 0.0029 17.6 1.5 0.0084 16.2 0.6 2.3 2 1 0 2 2 2 1 Transposase HTH_29 PF13551.6 gi|89255917|ref|YP_513279.1| - 0.0033 17.4 0.0 0.008 16.2 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn helix HTH_40 PF14493.6 gi|89255917|ref|YP_513279.1| - 0.0099 16.3 0.1 0.069 13.6 0.0 2.3 3 1 0 3 3 3 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|89255917|ref|YP_513279.1| - 0.026 14.6 0.0 0.073 13.2 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|89255917|ref|YP_513279.1| - 0.12 12.2 0.0 0.34 10.8 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain rve PF00665.26 gi|89255917|ref|YP_513279.1| - 0.15 12.3 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 Integrase core domain DDE_Tnp_ISAZ013 PF07592.11 gi|89255917|ref|YP_513279.1| - 0.17 10.9 0.3 1.1 8.1 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain DUF5305 PF17231.2 gi|89255918|ref|YP_513280.1| - 1.5 8.2 6.5 0.37 10.1 0.2 2.8 3 1 1 4 4 4 0 Family of unknown function (DUF5305) BolA PF01722.18 gi|89255919|ref|YP_513281.1| - 4.5e-10 39.7 0.1 5.1e-10 39.5 0.1 1.1 1 0 0 1 1 1 1 BolA-like protein Ta0938 PF11494.8 gi|89255919|ref|YP_513281.1| - 0.06 13.6 0.0 0.061 13.6 0.0 1.1 1 0 0 1 1 1 0 Ta0938 YlaC PF10777.9 gi|89255919|ref|YP_513281.1| - 0.063 13.1 0.1 0.1 12.4 0.1 1.3 1 1 0 1 1 1 0 Inner membrane protein YlaC STAS_2 PF13466.6 gi|89255920|ref|YP_513282.1| - 9e-08 32.4 0.0 1e-07 32.2 0.0 1.0 1 0 0 1 1 1 1 STAS domain STAS PF01740.21 gi|89255920|ref|YP_513282.1| - 6.7e-06 25.7 0.1 7.9e-06 25.5 0.1 1.1 1 0 0 1 1 1 1 STAS domain MlaC PF05494.12 gi|89255921|ref|YP_513283.1| - 5.6e-23 81.5 3.0 7.1e-23 81.2 3.0 1.2 1 0 0 1 1 1 1 MlaC protein MlaD PF02470.20 gi|89255922|ref|YP_513284.1| - 3.3e-20 72.2 0.4 5.1e-20 71.6 0.1 1.4 2 0 0 2 2 2 1 MlaD protein DUF3333 PF11812.8 gi|89255922|ref|YP_513284.1| - 0.1 12.8 0.2 0.14 12.4 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3333) MlaE PF02405.16 gi|89255923|ref|YP_513285.1| - 5e-68 228.9 19.1 6.6e-68 228.5 19.1 1.2 1 0 0 1 1 1 1 Permease MlaE ABC_tran PF00005.27 gi|89255924|ref|YP_513286.1| - 3.5e-30 105.3 0.1 8.1e-30 104.1 0.0 1.6 2 0 0 2 2 2 1 ABC transporter AAA_15 PF13175.6 gi|89255924|ref|YP_513286.1| - 7.3e-05 22.6 0.2 0.00024 21.0 0.2 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|89255924|ref|YP_513286.1| - 7.3e-05 23.4 0.5 7.3e-05 23.4 0.5 2.1 3 0 0 3 3 3 1 AAA domain AAA_21 PF13304.6 gi|89255924|ref|YP_513286.1| - 0.00017 21.5 0.8 0.0041 17.0 0.3 2.3 1 1 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|89255924|ref|YP_513286.1| - 0.0008 19.1 0.2 0.0017 18.1 0.2 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|89255924|ref|YP_513286.1| - 0.0022 17.9 0.0 0.0043 17.0 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_30 PF13604.6 gi|89255924|ref|YP_513286.1| - 0.013 15.2 0.0 0.02 14.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|89255924|ref|YP_513286.1| - 0.014 16.0 0.2 0.44 11.1 0.1 2.4 2 1 0 2 2 2 0 AAA domain AAA_3 PF07726.11 gi|89255924|ref|YP_513286.1| - 0.016 15.0 0.0 0.26 11.2 0.0 2.2 1 1 1 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|89255924|ref|YP_513286.1| - 0.031 14.7 0.0 0.046 14.1 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.6 gi|89255924|ref|YP_513286.1| - 0.032 14.5 1.9 0.11 12.7 0.2 2.3 2 1 0 3 3 3 0 AAA domain AAA_14 PF13173.6 gi|89255924|ref|YP_513286.1| - 0.062 13.3 0.2 0.14 12.2 0.1 1.7 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|89255924|ref|YP_513286.1| - 0.072 13.1 0.1 0.3 11.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) SMC_N PF02463.19 gi|89255924|ref|YP_513286.1| - 0.09 12.2 0.5 0.31 10.4 0.4 1.9 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain ATPase PF06745.13 gi|89255924|ref|YP_513286.1| - 0.09 12.1 0.6 2.1 7.6 0.2 2.4 2 0 0 2 2 2 0 KaiC AAA PF00004.29 gi|89255924|ref|YP_513286.1| - 0.14 12.6 0.6 0.44 11.0 0.1 2.0 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) ABC_ATPase PF09818.9 gi|89255924|ref|YP_513286.1| - 0.53 9.0 3.0 6.8 5.4 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class MinE PF03776.14 gi|89255925|ref|YP_513287.1| - 6e-20 71.0 2.6 8.2e-20 70.6 2.6 1.2 1 0 0 1 1 1 1 Septum formation topological specificity factor MinE AAA_31 PF13614.6 gi|89255926|ref|YP_513288.1| - 3.3e-21 76.0 0.2 6.8e-21 75.0 0.2 1.5 1 1 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|89255926|ref|YP_513288.1| - 6.7e-21 74.7 0.1 8.8e-21 74.3 0.1 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|89255926|ref|YP_513288.1| - 8.5e-17 61.4 0.2 2.8e-16 59.7 0.2 1.7 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase MipZ PF09140.11 gi|89255926|ref|YP_513288.1| - 2e-10 40.4 0.8 3.4e-10 39.7 0.8 1.4 1 1 0 1 1 1 1 ATPase MipZ ArsA_ATPase PF02374.15 gi|89255926|ref|YP_513288.1| - 2.3e-09 36.9 2.9 2.3e-08 33.6 1.6 2.2 2 0 0 2 2 2 1 Anion-transporting ATPase CBP_BcsQ PF06564.12 gi|89255926|ref|YP_513288.1| - 2.6e-09 36.9 0.0 4.5e-09 36.1 0.0 1.5 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 gi|89255926|ref|YP_513288.1| - 1.9e-05 24.3 0.1 0.0091 15.5 0.0 2.2 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_26 PF13500.6 gi|89255926|ref|YP_513288.1| - 0.0027 17.6 2.4 1.5 8.6 0.7 2.8 2 1 0 2 2 2 2 AAA domain AAA_24 PF13479.6 gi|89255926|ref|YP_513288.1| - 0.0029 17.4 0.0 0.0043 16.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain SRP54 PF00448.22 gi|89255926|ref|YP_513288.1| - 0.0052 16.4 3.3 0.04 13.5 0.9 2.2 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain CLP1_P PF16575.5 gi|89255926|ref|YP_513288.1| - 0.088 12.6 0.1 0.24 11.2 0.1 1.7 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_16 PF13191.6 gi|89255926|ref|YP_513288.1| - 0.14 12.5 0.0 0.28 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.6 gi|89255926|ref|YP_513288.1| - 0.18 11.5 1.2 0.41 10.3 1.2 1.5 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|89255926|ref|YP_513288.1| - 0.24 10.9 1.1 0.61 9.6 1.1 1.7 1 1 0 1 1 1 0 AAA domain MinC_C PF03775.16 gi|89255927|ref|YP_513289.1| - 4.9e-30 103.5 2.0 7.6e-30 102.9 2.0 1.3 1 0 0 1 1 1 1 Septum formation inhibitor MinC, C-terminal domain MinC_N PF05209.13 gi|89255927|ref|YP_513289.1| - 4e-11 42.8 0.1 6.3e-11 42.2 0.1 1.3 1 0 0 1 1 1 1 Septum formation inhibitor MinC, N-terminal domain PhaC_N PF07167.13 gi|89255927|ref|YP_513289.1| - 0.082 12.6 0.2 0.13 11.9 0.2 1.3 1 0 0 1 1 1 0 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus Ribosomal_L33 PF00471.20 gi|89255928|ref|YP_513290.1| - 2.5e-17 63.0 3.3 2.8e-17 62.9 3.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L33 Ribosomal_L28 PF00830.19 gi|89255929|ref|YP_513291.1| - 3.2e-25 88.1 2.0 3.8e-25 87.9 2.0 1.1 1 0 0 1 1 1 1 Ribosomal L28 family LPAM_2 PF13627.6 gi|89255930|ref|YP_513292.1| - 2.3e-08 33.6 1.7 3.3e-08 33.1 1.7 1.3 1 0 0 1 1 1 1 Prokaryotic lipoprotein-attachment site DUF4663 PF15668.5 gi|89255930|ref|YP_513292.1| - 0.019 14.1 0.4 0.02 14.0 0.4 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4663) LPAM_1 PF08139.12 gi|89255930|ref|YP_513292.1| - 0.19 12.3 3.8 1 10.0 3.8 1.9 1 1 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site Helicase_C PF00271.31 gi|89255931|ref|YP_513293.1| - 5.6e-21 75.0 0.1 3.6e-16 59.5 0.0 2.6 2 0 0 2 2 2 2 Helicase conserved C-terminal domain DEAD PF00270.29 gi|89255931|ref|YP_513293.1| - 2.4e-18 66.5 2.7 5.3e-18 65.4 0.5 2.2 2 0 0 2 2 2 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|89255931|ref|YP_513293.1| - 9.5e-13 48.5 0.0 2.3e-12 47.3 0.0 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit RecG_wedge PF17191.4 gi|89255931|ref|YP_513293.1| - 4.9e-11 42.5 0.0 1.4e-10 41.0 0.0 1.8 1 0 0 1 1 1 1 RecG wedge domain AAA_30 PF13604.6 gi|89255931|ref|YP_513293.1| - 5.3e-09 36.1 0.6 3.6e-06 26.8 0.1 2.3 2 0 0 2 2 2 2 AAA domain tRNA_anti-codon PF01336.25 gi|89255931|ref|YP_513293.1| - 1.5e-06 28.1 0.0 3.6e-06 26.9 0.0 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain SNF2_N PF00176.23 gi|89255931|ref|YP_513293.1| - 2.7e-05 23.1 0.0 5.5e-05 22.1 0.0 1.4 1 1 0 1 1 1 1 SNF2 family N-terminal domain AAA_22 PF13401.6 gi|89255931|ref|YP_513293.1| - 5.4e-05 23.5 0.2 0.2 11.9 0.0 2.8 2 1 0 2 2 2 2 AAA domain Helicase_RecD PF05127.14 gi|89255931|ref|YP_513293.1| - 0.00044 20.1 0.2 0.0052 16.6 0.0 2.2 2 0 0 2 2 2 1 Helicase IstB_IS21 PF01695.17 gi|89255931|ref|YP_513293.1| - 0.0014 18.4 0.0 0.0031 17.3 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein DUF2791 PF10923.8 gi|89255931|ref|YP_513293.1| - 0.0018 17.2 0.3 0.0043 16.0 0.0 1.7 2 0 0 2 2 2 1 P-loop Domain of unknown function (DUF2791) DUF3638 PF12340.8 gi|89255931|ref|YP_513293.1| - 0.0075 15.6 0.1 0.015 14.6 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3638) TsaE PF02367.17 gi|89255931|ref|YP_513293.1| - 0.011 15.7 0.1 0.067 13.2 0.0 2.4 3 0 0 3 3 3 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE PhoH PF02562.16 gi|89255931|ref|YP_513293.1| - 0.017 14.6 1.6 0.15 11.4 0.2 2.5 2 1 0 2 2 2 0 PhoH-like protein ERCC3_RAD25_C PF16203.5 gi|89255931|ref|YP_513293.1| - 0.018 14.2 0.6 0.09 12.0 0.0 2.3 2 1 0 3 3 3 0 ERCC3/RAD25/XPB C-terminal helicase SecA_DEAD PF07517.14 gi|89255931|ref|YP_513293.1| - 0.034 13.5 0.0 0.079 12.2 0.0 1.6 1 0 0 1 1 1 0 SecA DEAD-like domain PIF1 PF05970.14 gi|89255931|ref|YP_513293.1| - 0.053 12.7 0.1 0.087 12.0 0.1 1.4 1 0 0 1 1 1 0 PIF1-like helicase DUF3240 PF11582.8 gi|89255931|ref|YP_513293.1| - 0.077 13.1 0.9 0.65 10.2 0.0 2.9 3 1 0 3 3 3 0 Protein of unknown function (DUF3240) AAA_16 PF13191.6 gi|89255931|ref|YP_513293.1| - 0.11 12.8 0.0 0.31 11.4 0.0 2.0 1 1 0 1 1 1 0 AAA ATPase domain CbiA PF01656.23 gi|89255931|ref|YP_513293.1| - 0.12 12.4 2.1 1.2 9.2 1.3 2.8 2 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain Fumerase PF05681.14 gi|89255932|ref|YP_513294.1| - 1.9e-94 316.1 0.1 3.2e-94 315.4 0.0 1.4 2 0 0 2 2 2 1 Fumarate hydratase (Fumerase) Fumerase_C PF05683.12 gi|89255932|ref|YP_513294.1| - 1.9e-78 262.5 0.1 2.9e-78 261.9 0.1 1.3 1 0 0 1 1 1 1 Fumarase C-terminus HTH_Tnp_IS630 PF01710.16 gi|89255933|ref|YP_513295.1| - 0.0016 18.5 0.8 0.006 16.6 0.8 2.1 1 1 0 1 1 1 1 Transposase HTH_29 PF13551.6 gi|89255933|ref|YP_513295.1| - 0.002 18.1 0.0 0.0057 16.6 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn helix HTH_40 PF14493.6 gi|89255933|ref|YP_513295.1| - 0.0092 16.4 0.4 0.046 14.2 0.0 2.3 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|89255933|ref|YP_513295.1| - 0.019 15.1 0.0 0.054 13.6 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain Sigma70_ECF PF07638.11 gi|89255933|ref|YP_513295.1| - 0.042 13.7 0.0 0.32 10.9 0.0 2.0 2 0 0 2 2 2 0 ECF sigma factor HTH_23 PF13384.6 gi|89255933|ref|YP_513295.1| - 0.084 12.7 0.0 0.25 11.2 0.0 1.9 2 0 0 2 2 2 0 Homeodomain-like domain GIY-YIG PF01541.24 gi|89255934|ref|YP_513296.1| - 7.6e-13 48.6 2.8 1e-12 48.2 2.8 1.1 1 0 0 1 1 1 1 GIY-YIG catalytic domain T5orf172 PF10544.9 gi|89255934|ref|YP_513296.1| - 0.012 16.2 0.3 0.021 15.3 0.3 1.5 1 1 0 1 1 1 0 T5orf172 domain MUG113 PF13455.6 gi|89255934|ref|YP_513296.1| - 0.059 14.1 0.1 8.3 7.2 0.0 2.2 1 1 1 2 2 2 0 Meiotically up-regulated gene 113 ResIII PF04851.15 gi|89255935|ref|YP_513297.1| - 3.2e-17 63.1 2.9 3.2e-17 63.1 2.9 2.8 3 1 0 3 3 3 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|89255935|ref|YP_513297.1| - 9.1e-06 25.6 0.3 9.1e-06 25.6 0.3 2.9 3 1 1 4 4 4 1 DEAD/DEAH box helicase DUF5600 PF18150.1 gi|89255935|ref|YP_513297.1| - 0.013 16.1 6.4 0.013 16.0 2.4 3.2 2 0 0 2 2 2 0 Domain of unknown function (DUF5600) Tricorn_C1 PF14684.6 gi|89255935|ref|YP_513297.1| - 0.78 9.9 4.9 29 4.8 0.6 3.7 2 1 0 2 2 2 0 Tricorn protease C1 domain AAA_lid_1 PF17857.1 gi|89255935|ref|YP_513297.1| - 5.7 7.2 8.2 24 5.2 0.5 4.3 3 2 2 5 5 5 0 AAA+ lid domain UDG PF03167.19 gi|89255936|ref|YP_513298.1| - 9.9e-22 77.6 0.0 1.3e-21 77.2 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily ABC2_membrane_3 PF12698.7 gi|89255937|ref|YP_513299.1| - 0.17 10.9 2.4 0.2 10.7 2.4 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein DNA_topoisoIV PF00521.20 gi|89255940|ref|YP_513302.1| - 7.9e-154 512.6 0.4 1.1e-153 512.2 0.4 1.2 1 0 0 1 1 1 1 DNA gyrase/topoisomerase IV, subunit A DNA_gyraseA_C PF03989.13 gi|89255940|ref|YP_513302.1| - 9.1e-76 249.2 9.6 2.9e-14 52.2 0.1 6.6 6 0 0 6 6 6 6 DNA gyrase C-terminal domain, beta-propeller AMIN PF11741.8 gi|89255940|ref|YP_513302.1| - 0.045 13.9 0.1 0.45 10.7 0.1 2.6 2 0 0 2 2 2 0 AMIN domain SBD PF17882.1 gi|89255940|ref|YP_513302.1| - 0.12 12.1 0.9 1.2 9.0 0.3 2.2 1 1 1 2 2 2 0 OAA-family lectin sugar binding domain DXP_reductoisom PF02670.16 gi|89255941|ref|YP_513303.1| - 2.3e-42 144.7 1.8 2.3e-42 144.7 1.8 1.7 2 0 0 2 2 2 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase DXP_redisom_C PF08436.12 gi|89255941|ref|YP_513303.1| - 3.2e-40 136.1 0.1 9.1e-40 134.7 0.0 1.8 2 0 0 2 2 2 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain DXPR_C PF13288.6 gi|89255941|ref|YP_513303.1| - 1.8e-32 112.0 0.9 3.1e-32 111.2 0.9 1.4 1 0 0 1 1 1 1 DXP reductoisomerase C-terminal domain NmrA PF05368.13 gi|89255941|ref|YP_513303.1| - 0.00024 20.7 0.2 0.0004 20.0 0.2 1.4 1 0 0 1 1 1 1 NmrA-like family Semialdhyde_dh PF01118.24 gi|89255941|ref|YP_513303.1| - 0.00037 20.9 0.3 0.0038 17.6 0.1 2.8 2 1 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain DapB_N PF01113.20 gi|89255941|ref|YP_513303.1| - 0.0011 19.1 0.9 0.0028 17.7 0.2 2.0 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus Sacchrp_dh_NADP PF03435.18 gi|89255941|ref|YP_513303.1| - 0.0058 16.9 0.3 0.04 14.2 0.1 2.5 2 1 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain RsbU_N PF08673.10 gi|89255941|ref|YP_513303.1| - 0.098 12.8 0.9 0.24 11.5 0.2 1.9 2 0 0 2 2 2 0 Phosphoserine phosphatase RsbU, N-terminal domain Bac_surface_Ag PF01103.23 gi|89255942|ref|YP_513304.1| - 7.9e-63 212.9 21.2 1.3e-62 212.2 21.2 1.4 1 0 0 1 1 1 1 Surface antigen POTRA PF07244.15 gi|89255942|ref|YP_513304.1| - 1.9e-53 179.0 15.0 4.2e-13 49.7 0.0 5.5 5 0 0 5 5 5 5 Surface antigen variable number repeat POTRA_2 PF08479.11 gi|89255942|ref|YP_513304.1| - 1.1e-07 31.6 0.2 0.007 16.2 0.0 4.7 5 0 0 5 5 5 2 POTRA domain, ShlB-type POTRA_1 PF08478.10 gi|89255942|ref|YP_513304.1| - 0.095 13.0 0.0 1.2e+02 3.1 0.0 4.4 5 0 0 5 5 5 0 POTRA domain, FtsQ-type OmpH PF03938.14 gi|89255943|ref|YP_513305.1| - 1.6e-18 67.4 22.9 1.8e-18 67.2 22.9 1.0 1 0 0 1 1 1 1 Outer membrane protein (OmpH-like) Mab-21 PF03281.14 gi|89255943|ref|YP_513305.1| - 0.003 16.9 4.6 0.0033 16.8 4.6 1.1 1 0 0 1 1 1 1 Mab-21 protein Not3 PF04065.15 gi|89255943|ref|YP_513305.1| - 0.0034 16.8 13.3 0.0041 16.6 13.3 1.1 1 0 0 1 1 1 1 Not1 N-terminal domain, CCR4-Not complex component AAA_11 PF13086.6 gi|89255943|ref|YP_513305.1| - 0.031 14.1 7.4 0.034 13.9 7.4 1.1 1 0 0 1 1 1 0 AAA domain Drf_GBD PF06371.13 gi|89255943|ref|YP_513305.1| - 0.059 12.9 10.8 0.09 12.3 10.8 1.3 1 0 0 1 1 1 0 Diaphanous GTPase-binding Domain Y_phosphatase2 PF03162.13 gi|89255943|ref|YP_513305.1| - 0.066 12.8 2.3 0.092 12.3 1.8 1.4 1 1 0 1 1 1 0 Tyrosine phosphatase family TINF2_N PF14973.6 gi|89255943|ref|YP_513305.1| - 0.08 13.3 6.5 0.12 12.7 6.5 1.5 1 0 0 1 1 1 0 TERF1-interacting nuclear factor 2 N-terminus FlxA PF14282.6 gi|89255943|ref|YP_513305.1| - 0.095 12.7 22.8 0.18 11.8 22.8 1.5 1 0 0 1 1 1 0 FlxA-like protein Allexi_40kDa PF05549.11 gi|89255943|ref|YP_513305.1| - 0.14 11.7 5.6 0.15 11.5 5.6 1.1 1 0 0 1 1 1 0 Allexivirus 40kDa protein EMC3_TMCO1 PF01956.16 gi|89255943|ref|YP_513305.1| - 0.26 11.0 7.7 0.45 10.2 7.7 1.4 1 0 0 1 1 1 0 Integral membrane protein EMC3/TMCO1-like FapA PF03961.13 gi|89255943|ref|YP_513305.1| - 0.28 9.8 10.6 0.28 9.7 10.6 1.1 1 0 0 1 1 1 0 Flagellar Assembly Protein A Exonuc_VII_L PF02601.15 gi|89255943|ref|YP_513305.1| - 0.63 9.5 12.0 0.93 9.0 12.0 1.2 1 0 0 1 1 1 0 Exonuclease VII, large subunit TrbI_Ftype PF09677.10 gi|89255943|ref|YP_513305.1| - 0.98 9.8 6.8 0.16 12.3 1.6 2.0 1 1 1 2 2 2 0 Type-F conjugative transfer system protein (TrbI_Ftype) DUF4407 PF14362.6 gi|89255943|ref|YP_513305.1| - 1.1 8.6 12.3 1.4 8.2 12.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) ALMT PF11744.8 gi|89255943|ref|YP_513305.1| - 2.5 6.8 11.0 2.8 6.6 11.0 1.1 1 0 0 1 1 1 0 Aluminium activated malate transporter Hexapep PF00132.24 gi|89255944|ref|YP_513306.1| - 9.2e-34 113.9 48.5 1.6e-11 43.4 8.3 5.9 5 1 0 5 5 5 5 Bacterial transferase hexapeptide (six repeats) LpxD PF04613.14 gi|89255944|ref|YP_513306.1| - 2.9e-23 81.4 0.1 6.6e-23 80.3 0.1 1.7 1 0 0 1 1 1 1 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD Hexapep_2 PF14602.6 gi|89255944|ref|YP_513306.1| - 3e-13 49.2 49.6 6.8e-06 25.7 7.1 6.2 4 2 2 6 6 6 6 Hexapeptide repeat of succinyl-transferase DUF4954 PF16314.5 gi|89255944|ref|YP_513306.1| - 0.0011 17.2 11.0 0.0058 14.8 3.2 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF4954) Fucokinase PF07959.12 gi|89255944|ref|YP_513306.1| - 0.0076 15.2 1.8 0.13 11.2 0.2 2.3 2 0 0 2 2 2 2 L-fucokinase FabA PF07977.13 gi|89255945|ref|YP_513307.1| - 2e-31 108.5 0.1 3e-31 107.9 0.1 1.3 1 0 0 1 1 1 1 FabA-like domain 4HBT PF03061.22 gi|89255945|ref|YP_513307.1| - 0.034 14.5 0.1 0.055 13.8 0.1 1.4 1 0 0 1 1 1 0 Thioesterase superfamily MaoC_dehydratas PF01575.19 gi|89255945|ref|YP_513307.1| - 0.046 13.3 0.1 0.079 12.5 0.1 1.4 1 0 0 1 1 1 0 MaoC like domain PS-DH PF14765.6 gi|89255945|ref|YP_513307.1| - 0.062 12.5 0.2 2.6 7.2 0.0 2.0 1 1 1 2 2 2 0 Polyketide synthase dehydratase Acetyltransf_11 PF13720.6 gi|89255946|ref|YP_513308.1| - 3.8e-23 81.7 0.0 6e-23 81.1 0.0 1.3 1 0 0 1 1 1 1 Udp N-acetylglucosamine O-acyltransferase; Domain 2 Hexapep PF00132.24 gi|89255946|ref|YP_513308.1| - 7.1e-20 69.9 30.8 1.1e-08 34.5 1.5 6.3 3 2 5 8 8 8 8 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|89255946|ref|YP_513308.1| - 0.0035 17.0 4.9 0.0035 17.0 4.9 5.4 5 3 0 5 5 5 1 Hexapeptide repeat of succinyl-transferase LpxB PF02684.15 gi|89255947|ref|YP_513309.1| - 3.3e-104 348.7 0.2 3.9e-104 348.5 0.2 1.0 1 0 0 1 1 1 1 Lipid-A-disaccharide synthetase MAF_flag10 PF01973.18 gi|89255947|ref|YP_513309.1| - 0.1 12.3 0.0 0.21 11.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function DUF115 ZipA_C PF04354.13 gi|89255948|ref|YP_513310.1| - 2.8e-07 30.5 0.0 4e-07 29.9 0.0 1.2 1 0 0 1 1 1 1 ZipA, C-terminal FtsZ-binding domain TRP_N PF14558.6 gi|89255949|ref|YP_513311.1| - 0.19 12.1 0.0 0.26 11.6 0.0 1.2 1 0 0 1 1 1 0 ML-like domain PPK2 PF03976.14 gi|89255950|ref|YP_513312.1| - 1.4e-103 345.3 4.3 1.6e-103 345.1 4.3 1.0 1 0 0 1 1 1 1 Polyphosphate kinase 2 (PPK2) IF3_C PF00707.22 gi|89255950|ref|YP_513312.1| - 0.036 14.0 0.2 0.086 12.8 0.2 1.6 1 0 0 1 1 1 0 Translation initiation factor IF-3, C-terminal domain Toprim_3 PF13362.6 gi|89255950|ref|YP_513312.1| - 0.06 13.7 0.0 0.81 10.1 0.0 2.3 2 0 0 2 2 2 0 Toprim domain CDP-OH_P_transf PF01066.21 gi|89255951|ref|YP_513313.1| - 0.00023 21.8 2.2 0.00023 21.8 2.2 3.4 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase VirB8 PF04335.13 gi|89255951|ref|YP_513313.1| - 0.81 9.5 4.8 0.37 10.6 0.2 2.0 2 0 0 2 2 2 0 VirB8 protein polyprenyl_synt PF00348.17 gi|89255952|ref|YP_513314.1| - 2.4e-51 174.3 2.7 2.9e-51 174.0 2.7 1.0 1 0 0 1 1 1 1 Polyprenyl synthetase Glycos_transf_N PF04413.16 gi|89255953|ref|YP_513315.1| - 3.2e-57 193.0 0.0 5.3e-57 192.3 0.0 1.4 1 0 0 1 1 1 1 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) Glycos_transf_1 PF00534.20 gi|89255953|ref|YP_513315.1| - 1.2e-06 28.1 0.0 3.5e-06 26.7 0.0 1.9 1 1 0 1 1 1 1 Glycosyl transferases group 1 Epimerase_2 PF02350.19 gi|89255953|ref|YP_513315.1| - 0.017 14.0 0.5 1.6 7.5 0.0 2.8 3 0 0 3 3 3 0 UDP-N-acetylglucosamine 2-epimerase Ham1p_like PF01725.16 gi|89255954|ref|YP_513316.1| - 2.3e-59 200.5 0.0 2.5e-59 200.4 0.0 1.0 1 0 0 1 1 1 1 Ham1 family P5CR_dimer PF14748.6 gi|89255955|ref|YP_513317.1| - 3.2e-31 107.6 0.6 1.1e-30 106.0 0.4 1.9 2 0 0 2 2 2 1 Pyrroline-5-carboxylate reductase dimerisation F420_oxidored PF03807.17 gi|89255955|ref|YP_513317.1| - 3.8e-18 65.9 2.5 1.4e-17 64.1 0.2 2.6 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|89255955|ref|YP_513317.1| - 8.9e-06 25.9 0.2 2.3e-05 24.6 0.2 1.7 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Shikimate_DH PF01488.20 gi|89255955|ref|YP_513317.1| - 1.1e-05 25.6 0.6 1.1e-05 25.6 0.6 2.0 3 0 0 3 3 3 1 Shikimate / quinate 5-dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|89255955|ref|YP_513317.1| - 0.0023 17.9 3.6 0.0055 16.7 1.4 2.5 2 1 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus PDH PF02153.17 gi|89255955|ref|YP_513317.1| - 0.0053 15.8 0.7 0.012 14.7 0.7 1.7 1 1 0 1 1 1 1 Prephenate dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|89255955|ref|YP_513317.1| - 0.0069 16.7 1.2 0.021 15.1 0.0 2.4 2 1 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain YflT PF11181.8 gi|89255955|ref|YP_513317.1| - 0.017 15.7 0.3 0.065 13.8 0.0 2.1 2 2 0 2 2 2 0 Heat induced stress protein YflT GFO_IDH_MocA PF01408.22 gi|89255955|ref|YP_513317.1| - 0.022 15.6 0.3 0.075 13.9 0.0 2.0 3 0 0 3 3 3 0 Oxidoreductase family, NAD-binding Rossmann fold ApbA PF02558.16 gi|89255955|ref|YP_513317.1| - 0.12 12.1 1.1 0.43 10.2 1.1 1.9 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Response_reg PF00072.24 gi|89255956|ref|YP_513318.1| - 9.9e-26 90.1 0.1 1.8e-25 89.3 0.1 1.4 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 gi|89255956|ref|YP_513318.1| - 1.5e-22 79.4 0.0 3e-22 78.5 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal OKR_DC_1_N PF03709.15 gi|89255956|ref|YP_513318.1| - 0.025 14.8 0.0 0.055 13.8 0.0 1.5 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain Trp_syntA PF00290.20 gi|89255956|ref|YP_513318.1| - 0.046 12.5 0.0 0.09 11.6 0.0 1.4 1 0 0 1 1 1 0 Tryptophan synthase alpha chain GerE PF00196.19 gi|89255956|ref|YP_513318.1| - 0.092 12.3 0.4 0.22 11.1 0.1 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family Peptidase_S24 PF00717.23 gi|89255957|ref|YP_513319.1| - 2.2e-20 72.3 0.2 4e-20 71.5 0.2 1.4 1 0 0 1 1 1 1 Peptidase S24-like Peptidase_S26 PF10502.9 gi|89255957|ref|YP_513319.1| - 1.8e-12 47.2 0.0 9.7e-07 28.7 0.0 2.4 1 1 1 2 2 2 2 Signal peptidase, peptidase S26 Ribonucleas_3_3 PF14622.6 gi|89255958|ref|YP_513320.1| - 2e-32 112.0 0.2 4e-32 111.1 0.2 1.5 1 0 0 1 1 1 1 Ribonuclease-III-like Ribonuclease_3 PF00636.26 gi|89255958|ref|YP_513320.1| - 8.1e-24 84.3 0.6 1.5e-23 83.4 0.1 1.7 2 0 0 2 2 2 1 Ribonuclease III domain dsrm PF00035.26 gi|89255958|ref|YP_513320.1| - 2e-10 41.2 0.1 3.4e-10 40.5 0.1 1.4 1 0 0 1 1 1 1 Double-stranded RNA binding motif DND1_DSRM PF14709.7 gi|89255958|ref|YP_513320.1| - 9.7e-05 22.6 0.1 0.00037 20.7 0.1 1.9 1 1 0 1 1 1 1 double strand RNA binding domain from DEAD END PROTEIN 1 TruB_N PF01509.18 gi|89255959|ref|YP_513321.1| - 1.1e-60 204.3 0.0 1.6e-60 203.8 0.0 1.2 1 0 0 1 1 1 1 TruB family pseudouridylate synthase (N terminal domain) TruB_C_2 PF16198.5 gi|89255959|ref|YP_513321.1| - 1.2e-13 51.0 0.0 2.4e-13 50.0 0.0 1.5 1 0 0 1 1 1 1 tRNA pseudouridylate synthase B C-terminal domain TruB-C_2 PF09157.11 gi|89255959|ref|YP_513321.1| - 0.083 12.9 0.0 0.28 11.2 0.0 1.8 2 0 0 2 2 2 0 Pseudouridine synthase II TruB, C-terminal RNB PF00773.19 gi|89255960|ref|YP_513322.1| - 1.1e-110 370.1 2.3 1.6e-110 369.5 2.3 1.3 1 0 0 1 1 1 1 RNB domain S1 PF00575.23 gi|89255960|ref|YP_513322.1| - 1.1e-08 35.3 4.7 7.4e-06 26.2 0.9 3.5 2 1 0 2 2 2 2 S1 RNA binding domain RNase_II_C_S1 PF18614.1 gi|89255960|ref|YP_513322.1| - 0.029 14.3 0.0 0.064 13.2 0.0 1.6 1 0 0 1 1 1 0 RNase II-type exonuclease C-terminal S1 domain Ras PF00071.22 gi|89255960|ref|YP_513322.1| - 0.031 13.9 0.1 0.1 12.2 0.1 1.9 1 0 0 1 1 1 0 Ras family OB_RNB PF08206.11 gi|89255960|ref|YP_513322.1| - 0.094 12.4 0.5 0.37 10.5 0.2 2.2 2 0 0 2 2 2 0 Ribonuclease B OB domain Pro-kuma_activ PF09286.11 gi|89255960|ref|YP_513322.1| - 0.12 12.7 0.1 0.87 9.9 0.0 2.3 2 0 0 2 2 2 0 Pro-kumamolisin, activation domain CSD2 PF17876.1 gi|89255960|ref|YP_513322.1| - 3.3 8.0 5.9 3.5 7.9 0.2 3.2 3 0 0 3 3 3 0 Cold shock domain FA_desaturase PF00487.24 gi|89255961|ref|YP_513323.1| - 3.1e-11 43.6 16.6 3.8e-11 43.3 16.6 1.1 1 0 0 1 1 1 1 Fatty acid desaturase adh_short PF00106.25 gi|89255962|ref|YP_513324.1| - 2.2e-27 95.8 0.0 2.7e-27 95.5 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|89255962|ref|YP_513324.1| - 9.2e-17 61.4 0.0 1.1e-16 61.1 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|89255962|ref|YP_513324.1| - 4e-06 26.9 0.0 6.1e-06 26.3 0.0 1.2 1 0 0 1 1 1 1 KR domain Sacchrp_dh_NADP PF03435.18 gi|89255962|ref|YP_513324.1| - 0.00022 21.5 0.0 0.00031 21.0 0.0 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain DUF1776 PF08643.10 gi|89255962|ref|YP_513324.1| - 0.0011 18.4 0.4 0.0012 18.3 0.4 1.2 1 0 0 1 1 1 1 Fungal family of unknown function (DUF1776) Shikimate_DH PF01488.20 gi|89255962|ref|YP_513324.1| - 0.016 15.3 0.0 0.029 14.4 0.0 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase GIDE PF12483.8 gi|89255962|ref|YP_513324.1| - 0.02 14.3 0.0 0.032 13.6 0.0 1.3 1 0 0 1 1 1 0 E3 Ubiquitin ligase Polysacc_synt_2 PF02719.15 gi|89255962|ref|YP_513324.1| - 0.083 12.0 0.0 0.11 11.6 0.0 1.2 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein DUF3833 PF12915.7 gi|89255963|ref|YP_513325.1| - 5.1e-61 205.0 1.7 6e-61 204.8 1.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3833) Chalcone_3 PF16036.5 gi|89255964|ref|YP_513326.1| - 2.5e-08 34.2 0.1 4.5e-08 33.4 0.1 1.3 1 1 0 1 1 1 1 Chalcone isomerase-like Chalcone_2 PF16035.5 gi|89255964|ref|YP_513326.1| - 0.0063 16.3 0.1 0.012 15.4 0.0 1.4 2 0 0 2 2 2 1 Chalcone isomerase like DUF903 PF06004.12 gi|89255964|ref|YP_513326.1| - 0.85 9.6 4.5 0.37 10.7 0.8 2.1 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF903) CMAS PF02353.20 gi|89255965|ref|YP_513327.1| - 8.6e-75 251.5 2.4 1.1e-74 251.2 2.4 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_23 PF13489.6 gi|89255965|ref|YP_513327.1| - 2.7e-09 37.1 0.0 4.4e-09 36.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|89255965|ref|YP_513327.1| - 5.6e-09 36.6 0.0 1e-08 35.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|89255965|ref|YP_513327.1| - 2.8e-08 34.3 0.0 5.9e-08 33.3 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|89255965|ref|YP_513327.1| - 1.8e-06 28.6 0.0 6.3e-06 26.9 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|89255965|ref|YP_513327.1| - 0.0039 17.0 0.0 0.0074 16.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|89255965|ref|YP_513327.1| - 0.0093 15.5 0.0 0.017 14.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain UPF0047 PF01894.17 gi|89255965|ref|YP_513327.1| - 0.069 13.3 0.0 0.12 12.5 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised protein family UPF0047 Spermine_synth PF01564.17 gi|89255965|ref|YP_513327.1| - 0.086 12.2 0.2 0.19 11.1 0.0 1.6 2 0 0 2 2 2 0 Spermine/spermidine synthase domain DDE_Tnp_1_2 PF13586.6 gi|89255966|ref|YP_513328.1| - 1.1e-13 51.4 0.0 1.9e-13 50.6 0.0 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|89255966|ref|YP_513328.1| - 4.6e-12 46.1 2.0 4.1e-11 42.9 2.0 2.0 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 gi|89255966|ref|YP_513328.1| - 7.3e-08 32.6 0.0 1e-07 32.1 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF4096 PF13340.6 gi|89255966|ref|YP_513328.1| - 0.0059 16.8 0.0 0.012 15.9 0.0 1.5 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) SH3_3 PF08239.11 gi|89255967|ref|YP_513329.1| - 0.0047 17.2 0.6 0.021 15.1 0.6 2.0 1 1 0 1 1 1 1 Bacterial SH3 domain Mlf1IP PF10248.9 gi|89255967|ref|YP_513329.1| - 0.0055 16.7 0.5 0.0068 16.4 0.5 1.3 1 0 0 1 1 1 1 Myelodysplasia-myeloid leukemia factor 1-interacting protein Sec34 PF04136.15 gi|89255967|ref|YP_513329.1| - 0.014 15.3 0.2 0.052 13.4 0.6 1.7 2 1 0 2 2 2 0 Sec34-like family SH3_4 PF06347.13 gi|89255967|ref|YP_513329.1| - 0.032 14.1 1.3 0.099 12.5 1.3 1.9 1 1 0 1 1 1 0 Bacterial SH3 domain Taxilin PF09728.9 gi|89255967|ref|YP_513329.1| - 0.038 13.2 4.7 0.047 12.9 4.7 1.1 1 0 0 1 1 1 0 Myosin-like coiled-coil protein Fasciclin PF02469.22 gi|89255967|ref|YP_513329.1| - 0.044 14.0 1.9 0.067 13.4 1.9 1.2 1 0 0 1 1 1 0 Fasciclin domain DUF2690 PF10901.8 gi|89255967|ref|YP_513329.1| - 0.064 13.6 1.6 4.8 7.6 0.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2690) DUF5342 PF17277.2 gi|89255967|ref|YP_513329.1| - 0.11 12.9 0.1 0.27 11.6 0.1 1.7 1 1 0 1 1 1 0 Family of unknown function (DUF5342) Osmo_CC PF08946.10 gi|89255967|ref|YP_513329.1| - 0.2 11.9 2.6 7.7 6.8 1.1 2.5 1 1 1 2 2 2 0 Osmosensory transporter coiled coil SdpI PF13630.6 gi|89255968|ref|YP_513330.1| - 2.1 8.5 12.4 0.94 9.7 0.6 2.2 2 0 0 2 2 2 0 SdpI/YhfL protein family DUF5592 PF17332.2 gi|89255968|ref|YP_513330.1| - 2.8 8.5 17.2 3.7 8.2 7.6 2.1 2 0 0 2 2 2 0 Family of unknown function (DUF5592) Phage_holin_3_6 PF07332.11 gi|89255968|ref|YP_513330.1| - 9.4 6.3 16.1 6.9 6.8 1.5 2.1 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III LpoB PF13036.6 gi|89255969|ref|YP_513331.1| - 2.8e-44 150.6 4.9 3.4e-44 150.3 4.9 1.1 1 0 0 1 1 1 1 Peptidoglycan-synthase activator LpoB FlgT_M PF16539.5 gi|89255969|ref|YP_513331.1| - 0.001 19.2 1.0 0.0022 18.1 0.8 1.5 1 1 0 1 1 1 1 Flagellar assembly protein T, middle domain CsgG PF03783.14 gi|89255969|ref|YP_513331.1| - 0.0027 17.0 0.1 0.0046 16.3 0.1 1.4 1 0 0 1 1 1 1 Curli production assembly/transport component CsgG DUF799 PF05643.11 gi|89255969|ref|YP_513331.1| - 0.0034 17.0 0.1 0.0055 16.3 0.1 1.3 1 0 0 1 1 1 1 Putative bacterial lipoprotein (DUF799) DUF3280 PF11684.8 gi|89255969|ref|YP_513331.1| - 0.0042 17.5 0.2 0.014 15.8 0.2 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF2380) DUF4995 PF16386.5 gi|89255969|ref|YP_513331.1| - 0.038 14.0 0.4 0.44 10.6 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function RyR PF02026.16 gi|89255969|ref|YP_513331.1| - 0.099 12.8 0.0 0.19 11.9 0.0 1.5 1 0 0 1 1 1 0 RyR domain CsgG PF03783.14 gi|89255971|ref|YP_513333.1| - 3.6e-06 26.4 1.0 7.4e-06 25.4 0.9 1.6 1 1 1 2 2 2 1 Curli production assembly/transport component CsgG LpoB PF13036.6 gi|89255971|ref|YP_513333.1| - 7.2e-05 22.8 2.4 0.00018 21.4 2.4 1.7 1 1 0 1 1 1 1 Peptidoglycan-synthase activator LpoB LptE PF04390.12 gi|89255971|ref|YP_513333.1| - 0.1 13.3 3.1 0.27 11.9 2.8 1.9 1 1 1 2 2 2 0 Lipopolysaccharide-assembly TMEM52 PF14979.6 gi|89255972|ref|YP_513334.1| - 0.047 13.6 0.0 0.1 12.6 0.0 1.5 1 0 0 1 1 1 0 Transmembrane 52 DDE_Tnp_1_2 PF13586.6 gi|89255973|ref|YP_513335.1| - 1.1e-13 51.4 0.0 1.9e-13 50.6 0.0 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|89255973|ref|YP_513335.1| - 4.6e-12 46.1 2.0 4.1e-11 42.9 2.0 1.9 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 gi|89255973|ref|YP_513335.1| - 7.2e-08 32.6 0.0 1e-07 32.1 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF4096 PF13340.6 gi|89255973|ref|YP_513335.1| - 0.0059 16.8 0.0 0.012 15.9 0.0 1.5 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) Amidinotransf PF02274.17 gi|89255974|ref|YP_513336.1| - 6.1e-44 150.5 0.0 1.7e-42 145.7 0.0 2.0 1 1 0 1 1 1 1 Amidinotransferase CHMI PF02962.15 gi|89255974|ref|YP_513336.1| - 0.089 13.1 0.0 0.12 12.7 0.0 1.2 1 0 0 1 1 1 0 5-carboxymethyl-2-hydroxymuconate isomerase Amidinotransf PF02274.17 gi|89255975|ref|YP_513337.1| - 2.1e-15 56.7 0.1 2.3e-15 56.6 0.1 1.0 1 0 0 1 1 1 1 Amidinotransferase OCD_Mu_crystall PF02423.15 gi|89255976|ref|YP_513338.1| - 1e-85 287.5 0.1 1.1e-85 287.3 0.1 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.20 gi|89255976|ref|YP_513338.1| - 0.00026 21.1 0.0 0.00045 20.3 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase UDPG_MGDP_dh_C PF03720.15 gi|89255976|ref|YP_513338.1| - 0.0011 19.3 0.4 0.0097 16.3 0.2 2.5 2 1 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_binding_2 PF03446.15 gi|89255976|ref|YP_513338.1| - 0.019 15.1 0.0 0.032 14.4 0.0 1.4 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|89255976|ref|YP_513338.1| - 0.034 14.7 0.0 0.098 13.3 0.0 1.8 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent THF_DHG_CYH_C PF02882.19 gi|89255976|ref|YP_513338.1| - 0.055 12.8 0.1 0.092 12.1 0.1 1.4 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Helicase_RecD PF05127.14 gi|89255976|ref|YP_513338.1| - 0.14 12.0 0.1 0.22 11.4 0.1 1.2 1 0 0 1 1 1 0 Helicase NAPRTase PF04095.16 gi|89255977|ref|YP_513339.1| - 5.9e-49 166.8 0.1 7.3e-49 166.5 0.1 1.1 1 0 0 1 1 1 1 Nicotinate phosphoribosyltransferase (NAPRTase) family DUF5598 PF18127.1 gi|89255977|ref|YP_513339.1| - 3e-27 94.9 0.8 6.7e-27 93.8 0.8 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF5598) DUF465 PF04325.13 gi|89255978|ref|YP_513340.1| - 1.4e-11 44.2 2.6 1.4e-11 44.2 2.6 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF465) kleA_kleC PF17383.2 gi|89255978|ref|YP_513340.1| - 0.011 16.0 0.0 0.014 15.7 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized KorC regulated protein A Com_YlbF PF06133.11 gi|89255978|ref|YP_513340.1| - 0.029 15.0 3.3 0.039 14.6 3.3 1.3 1 0 0 1 1 1 0 Control of competence regulator ComK, YlbF/YmcA Sugar_tr PF00083.24 gi|89255979|ref|YP_513341.1| - 4.1e-64 217.1 44.3 4.7e-64 216.9 44.3 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|89255979|ref|YP_513341.1| - 1.5e-38 132.7 44.7 1.5e-38 132.7 44.7 2.0 1 1 1 2 2 2 1 Major Facilitator Superfamily MFS_3 PF05977.13 gi|89255979|ref|YP_513341.1| - 2 6.7 21.9 0.37 9.1 5.9 3.0 2 1 1 3 3 3 0 Transmembrane secretion effector 4HBT PF03061.22 gi|89255980|ref|YP_513342.1| - 3.7e-09 36.8 0.0 4.8e-09 36.4 0.0 1.2 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_3 PF13622.6 gi|89255980|ref|YP_513342.1| - 5e-05 23.7 0.0 6.1e-05 23.4 0.0 1.0 1 0 0 1 1 1 1 Thioesterase-like superfamily PixA PF12306.8 gi|89255980|ref|YP_513342.1| - 0.012 15.8 0.0 0.016 15.4 0.0 1.2 1 0 0 1 1 1 0 Inclusion body protein DUF3463 PF11946.8 gi|89255980|ref|YP_513342.1| - 0.019 14.8 0.0 0.035 13.9 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3463) Thiolase_N PF00108.23 gi|89255981|ref|YP_513343.1| - 2.1e-76 256.7 3.3 3e-76 256.2 3.3 1.2 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|89255981|ref|YP_513343.1| - 3e-45 152.8 0.4 6.6e-45 151.7 0.4 1.6 1 0 0 1 1 1 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|89255981|ref|YP_513343.1| - 0.00014 21.5 0.1 0.00034 20.3 0.1 1.8 1 0 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain FAE1_CUT1_RppA PF08392.12 gi|89255981|ref|YP_513343.1| - 0.0087 15.4 0.1 0.028 13.7 0.1 1.8 2 0 0 2 2 2 1 FAE1/Type III polyketide synthase-like protein ACP_syn_III PF08545.10 gi|89255981|ref|YP_513343.1| - 0.02 14.7 0.2 3.7 7.5 0.1 2.7 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 3HCDH_N PF02737.18 gi|89255982|ref|YP_513344.1| - 5.9e-48 163.1 0.0 1.4e-47 161.9 0.0 1.7 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ACBP PF00887.19 gi|89255982|ref|YP_513344.1| - 2.9e-23 81.9 1.1 8.2e-23 80.4 1.1 1.8 1 0 0 1 1 1 1 Acyl CoA binding protein ECH_1 PF00378.20 gi|89255982|ref|YP_513344.1| - 1.4e-16 60.6 0.1 3e-16 59.5 0.1 1.5 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase 3HCDH PF00725.22 gi|89255982|ref|YP_513344.1| - 9.7e-15 55.0 0.0 1.8e-10 41.3 0.0 2.8 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ECH_2 PF16113.5 gi|89255982|ref|YP_513344.1| - 4.3e-06 26.5 0.4 1.9e-05 24.4 0.1 2.1 2 0 0 2 2 2 1 Enoyl-CoA hydratase/isomerase NAD_binding_2 PF03446.15 gi|89255982|ref|YP_513344.1| - 4.7e-05 23.6 0.0 0.00016 21.9 0.0 1.9 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|89255982|ref|YP_513344.1| - 0.00074 19.5 0.6 0.0028 17.6 0.1 2.2 2 1 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Shikimate_DH PF01488.20 gi|89255982|ref|YP_513344.1| - 0.064 13.3 0.2 0.39 10.8 0.0 2.3 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase YjcQ PF09639.10 gi|89255982|ref|YP_513344.1| - 0.077 13.2 0.1 8.7 6.6 0.0 3.0 2 0 0 2 2 2 0 YjcQ protein ApbA PF02558.16 gi|89255982|ref|YP_513344.1| - 0.14 11.8 0.0 0.29 10.8 0.0 1.6 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA DUF1974 PF09317.11 gi|89255983|ref|YP_513345.1| - 5.9e-95 318.1 0.0 8e-95 317.6 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1974) Acyl-CoA_dh_N PF02771.16 gi|89255983|ref|YP_513345.1| - 6.6e-16 59.0 0.1 2.4e-15 57.2 0.0 2.0 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_1 PF00441.24 gi|89255983|ref|YP_513345.1| - 2e-14 54.1 1.1 3.5e-14 53.3 0.6 1.6 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|89255983|ref|YP_513345.1| - 2.7e-07 30.7 0.0 8.2e-07 29.1 0.0 1.9 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|89255983|ref|YP_513345.1| - 0.025 14.8 1.4 0.048 13.9 1.4 1.4 1 0 0 1 1 1 0 Acyl-CoA dehydrogenase, C-terminal domain CtsR_C PF17727.1 gi|89255983|ref|YP_513345.1| - 0.11 12.6 0.2 0.26 11.5 0.2 1.6 1 0 0 1 1 1 0 CtsR C-terminal dimerization domain AMP-binding PF00501.28 gi|89255984|ref|YP_513346.1| - 4.8e-93 312.0 0.0 5.9e-93 311.8 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|89255984|ref|YP_513346.1| - 2.1e-17 63.9 0.9 4.3e-17 62.9 0.3 1.9 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain RuvC PF02075.17 gi|89255984|ref|YP_513346.1| - 0.064 13.1 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 Crossover junction endodeoxyribonuclease RuvC ArsC PF03960.15 gi|89255985|ref|YP_513347.1| - 1.2e-12 47.6 0.1 1.9e-12 47.0 0.1 1.3 1 1 0 1 1 1 1 ArsC family Glutaredoxin PF00462.24 gi|89255985|ref|YP_513347.1| - 0.0013 18.9 0.0 0.0024 18.1 0.0 1.5 1 1 0 1 1 1 1 Glutaredoxin P2 PF07194.11 gi|89255985|ref|YP_513347.1| - 0.17 11.9 1.5 6.3 6.9 0.0 2.7 1 1 2 3 3 3 0 P2 response regulator binding domain IDH PF03971.14 gi|89255986|ref|YP_513348.1| - 0 1270.0 9.9 0 1269.9 9.9 1.0 1 0 0 1 1 1 1 Monomeric isocitrate dehydrogenase Wzz PF02706.15 gi|89255987|ref|YP_513349.1| - 5.1e-06 26.7 0.4 5.1e-06 26.7 0.4 3.4 3 1 0 3 3 3 1 Chain length determinant protein Rax2 PF12768.7 gi|89255987|ref|YP_513349.1| - 0.093 12.2 7.7 0.24 10.8 7.7 1.7 1 1 0 1 1 1 0 Cortical protein marker for cell polarity DHR10 PF18595.1 gi|89255987|ref|YP_513349.1| - 0.1 12.7 1.4 10 6.2 0.1 2.3 2 0 0 2 2 2 0 Designed helical repeat protein 10 domain Snapin_Pallidin PF14712.6 gi|89255987|ref|YP_513349.1| - 0.13 12.7 0.3 0.13 12.7 0.3 2.4 2 1 1 3 3 3 0 Snapin/Pallidin OppC_N PF12911.7 gi|89255987|ref|YP_513349.1| - 0.27 11.2 4.8 1.4 8.9 0.9 2.5 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C DUF3418 PF11898.8 gi|89255988|ref|YP_513350.1| - 1.9e-172 575.0 9.8 6.1e-172 573.3 9.8 1.8 1 1 0 1 1 1 1 Domain of unknown function (DUF3418) OB_NTP_bind PF07717.16 gi|89255988|ref|YP_513350.1| - 4.2e-18 65.5 0.0 1e-17 64.2 0.0 1.7 1 0 0 1 1 1 1 Oligonucleotide/oligosaccharide-binding (OB)-fold HA2 PF04408.23 gi|89255988|ref|YP_513350.1| - 5.1e-14 52.5 0.0 1.7e-13 50.7 0.0 2.0 1 0 0 1 1 1 1 Helicase associated domain (HA2) Helicase_C PF00271.31 gi|89255988|ref|YP_513350.1| - 2.4e-13 50.4 4.2 3.7e-13 49.8 0.1 3.5 4 0 0 4 4 4 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|89255988|ref|YP_513350.1| - 1.3e-06 28.3 0.5 1.3e-05 25.0 0.5 2.6 1 1 0 1 1 1 1 DEAD/DEAH box helicase AAA_22 PF13401.6 gi|89255988|ref|YP_513350.1| - 0.00058 20.1 0.1 0.0046 17.2 0.0 2.6 2 0 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|89255988|ref|YP_513350.1| - 0.0028 17.6 0.0 0.0072 16.2 0.0 1.7 1 0 0 1 1 1 1 RsgA GTPase T2SSE PF00437.20 gi|89255988|ref|YP_513350.1| - 0.0058 15.7 0.0 0.016 14.3 0.0 1.7 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_30 PF13604.6 gi|89255988|ref|YP_513350.1| - 0.037 13.8 0.0 0.095 12.4 0.0 1.7 1 0 0 1 1 1 0 AAA domain gp37_C PF12604.8 gi|89255988|ref|YP_513350.1| - 0.038 13.7 0.7 0.084 12.6 0.7 1.5 1 0 0 1 1 1 0 Tail fibre protein gp37 C terminal ABC_tran PF00005.27 gi|89255988|ref|YP_513350.1| - 0.07 13.7 0.5 0.6 10.6 0.0 3.0 2 0 0 2 2 2 0 ABC transporter Flavi_DEAD PF07652.14 gi|89255988|ref|YP_513350.1| - 0.071 13.1 0.0 0.17 11.8 0.0 1.7 1 0 0 1 1 1 0 Flavivirus DEAD domain DDE_Tnp_1_2 PF13586.6 gi|89255989|ref|YP_513351.1| - 1.1e-13 51.3 0.0 2e-13 50.5 0.0 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|89255989|ref|YP_513351.1| - 4.9e-12 46.0 2.0 4.4e-11 42.8 2.0 2.0 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 gi|89255989|ref|YP_513351.1| - 7.6e-08 32.5 0.0 1.1e-07 32.0 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF4096 PF13340.6 gi|89255989|ref|YP_513351.1| - 0.0061 16.8 0.0 0.012 15.8 0.0 1.5 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) Polysacc_synt_2 PF02719.15 gi|89255990|ref|YP_513352.1| - 8.3e-119 396.1 0.1 1.3e-118 395.4 0.1 1.3 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein Epimerase PF01370.21 gi|89255990|ref|YP_513352.1| - 6.2e-23 81.5 0.1 1.3e-20 73.9 0.1 2.9 2 1 0 2 2 2 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|89255990|ref|YP_513352.1| - 3.7e-13 49.6 0.2 6.5e-12 45.5 0.1 2.1 2 0 0 2 2 2 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|89255990|ref|YP_513352.1| - 7.8e-13 48.0 0.2 1.6e-12 47.0 0.2 1.5 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|89255990|ref|YP_513352.1| - 2e-11 43.5 0.0 4.2e-10 39.2 0.0 2.3 1 1 0 1 1 1 1 RmlD substrate binding domain CoA_binding_3 PF13727.6 gi|89255990|ref|YP_513352.1| - 7.4e-09 35.9 0.3 7.4e-09 35.9 0.3 1.7 1 1 1 2 2 2 1 CoA-binding domain adh_short PF00106.25 gi|89255990|ref|YP_513352.1| - 3e-08 33.4 0.2 8.9e-06 25.3 0.0 2.4 2 0 0 2 2 2 2 short chain dehydrogenase NAD_binding_10 PF13460.6 gi|89255990|ref|YP_513352.1| - 1.2e-07 31.8 0.0 2.3e-05 24.4 0.0 2.3 2 0 0 2 2 2 1 NAD(P)H-binding PglD_N PF17836.1 gi|89255990|ref|YP_513352.1| - 8.7e-06 26.3 0.1 8.9e-05 23.1 0.0 2.4 2 0 0 2 2 2 1 PglD N-terminal domain Shikimate_DH PF01488.20 gi|89255990|ref|YP_513352.1| - 5.7e-05 23.2 2.5 0.059 13.4 0.1 3.3 2 1 1 3 3 3 2 Shikimate / quinate 5-dehydrogenase NAD_binding_4 PF07993.12 gi|89255990|ref|YP_513352.1| - 9.6e-05 21.7 0.1 0.0013 18.0 0.1 2.5 1 1 2 3 3 3 1 Male sterility protein ThiF PF00899.21 gi|89255990|ref|YP_513352.1| - 0.00023 20.6 0.0 0.49 9.7 0.0 2.3 2 0 0 2 2 2 2 ThiF family Pyr_redox_2 PF07992.14 gi|89255990|ref|YP_513352.1| - 0.00026 20.3 0.0 0.0012 18.2 0.0 1.9 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Sacchrp_dh_NADP PF03435.18 gi|89255990|ref|YP_513352.1| - 0.00029 21.1 0.1 0.0037 17.5 0.1 2.3 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain KR PF08659.10 gi|89255990|ref|YP_513352.1| - 0.00049 20.1 0.0 0.0023 17.9 0.0 2.0 2 0 0 2 2 2 1 KR domain 3HCDH_N PF02737.18 gi|89255990|ref|YP_513352.1| - 0.00064 19.7 0.3 0.036 14.0 0.0 2.7 3 0 0 3 3 3 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NmrA PF05368.13 gi|89255990|ref|YP_513352.1| - 0.00068 19.3 0.2 0.099 12.2 0.1 2.5 2 0 0 2 2 2 1 NmrA-like family 2-Hacid_dh_C PF02826.19 gi|89255990|ref|YP_513352.1| - 0.0016 17.8 0.0 0.046 13.1 0.0 2.2 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|89255990|ref|YP_513352.1| - 0.013 15.8 0.1 3.2 8.0 0.0 2.7 2 0 0 2 2 2 0 TrkA-N domain ApbA PF02558.16 gi|89255990|ref|YP_513352.1| - 0.017 14.8 0.1 0.27 10.8 0.0 2.3 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.23 gi|89255990|ref|YP_513352.1| - 0.073 13.0 0.1 0.51 10.3 0.1 2.3 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus F420_oxidored PF03807.17 gi|89255990|ref|YP_513352.1| - 0.082 13.5 0.1 1.7 9.3 0.0 2.7 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent DUF2070 PF09843.9 gi|89255990|ref|YP_513352.1| - 0.11 10.7 10.0 0.21 9.8 10.0 1.4 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Bac_transf PF02397.16 gi|89255991|ref|YP_513353.1| - 8.9e-62 208.0 0.0 1e-61 207.8 0.0 1.0 1 0 0 1 1 1 1 Bacterial sugar transferase Epimerase PF01370.21 gi|89255992|ref|YP_513354.1| - 5e-18 65.4 0.0 3.9e-17 62.5 0.0 1.9 1 1 1 2 2 2 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|89255992|ref|YP_513354.1| - 3.4e-14 52.5 0.0 4.6e-14 52.1 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|89255992|ref|YP_513354.1| - 5.2e-09 35.6 0.0 6.3e-09 35.3 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|89255992|ref|YP_513354.1| - 1.4e-08 34.2 0.0 2.7e-08 33.3 0.0 1.4 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.6 gi|89255992|ref|YP_513354.1| - 0.00018 21.5 0.0 0.00023 21.1 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding GDP_Man_Dehyd PF16363.5 gi|89255992|ref|YP_513354.1| - 0.0032 16.9 0.0 0.0058 16.1 0.0 1.5 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Flavodoxin_5 PF12724.7 gi|89255992|ref|YP_513354.1| - 0.11 12.8 0.0 0.26 11.5 0.0 1.7 2 0 0 2 2 2 0 Flavodoxin domain Glycos_transf_1 PF00534.20 gi|89255993|ref|YP_513355.1| - 6.6e-27 94.1 0.0 1.2e-26 93.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|89255993|ref|YP_513355.1| - 4.2e-23 82.3 0.0 6.8e-23 81.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|89255993|ref|YP_513355.1| - 2.4e-18 66.5 0.7 3.9e-18 65.8 0.7 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.6 gi|89255993|ref|YP_513355.1| - 7e-06 26.3 0.0 1.3e-05 25.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_20 PF00982.21 gi|89255993|ref|YP_513355.1| - 0.025 13.3 0.0 0.034 12.8 0.0 1.2 1 0 0 1 1 1 0 Glycosyltransferase family 20 UDPG_MGDP_dh_N PF03721.14 gi|89255994|ref|YP_513356.1| - 8.3e-35 120.0 1.4 1.5e-34 119.3 0.6 1.7 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|89255994|ref|YP_513356.1| - 1.8e-22 79.3 0.0 4e-22 78.2 0.0 1.6 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|89255994|ref|YP_513356.1| - 4.6e-21 75.2 0.1 9.5e-21 74.2 0.1 1.6 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain SCO1-SenC PF02630.14 gi|89255994|ref|YP_513356.1| - 0.03 14.2 0.0 0.098 12.6 0.0 2.0 2 0 0 2 2 2 0 SCO1/SenC Epimerase PF01370.21 gi|89255995|ref|YP_513357.1| - 2.2e-60 204.1 0.0 2.6e-60 203.9 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|89255995|ref|YP_513357.1| - 5.2e-57 193.7 0.0 6.7e-57 193.4 0.0 1.1 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|89255995|ref|YP_513357.1| - 8.6e-28 97.1 0.0 1.2e-27 96.6 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|89255995|ref|YP_513357.1| - 2.4e-16 59.8 0.0 1.2e-15 57.5 0.0 1.8 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.6 gi|89255995|ref|YP_513357.1| - 1.8e-11 44.3 0.0 2.6e-11 43.8 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding NAD_binding_4 PF07993.12 gi|89255995|ref|YP_513357.1| - 6.2e-09 35.4 0.0 4.2e-07 29.4 0.0 2.2 1 1 0 1 1 1 1 Male sterility protein RmlD_sub_bind PF04321.17 gi|89255995|ref|YP_513357.1| - 3.1e-08 33.1 0.0 4.5e-08 32.5 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NmrA PF05368.13 gi|89255995|ref|YP_513357.1| - 1.3e-05 24.9 0.0 2.1e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family adh_short PF00106.25 gi|89255995|ref|YP_513357.1| - 6.2e-05 22.5 0.0 0.00021 20.8 0.0 1.8 3 0 0 3 3 3 1 short chain dehydrogenase KR PF08659.10 gi|89255995|ref|YP_513357.1| - 0.0011 18.9 0.0 0.71 9.8 0.0 2.4 2 0 0 2 2 2 2 KR domain RELT PF12606.8 gi|89255995|ref|YP_513357.1| - 0.0042 16.0 0.3 0.008 15.2 0.3 1.4 1 0 0 1 1 1 1 Tumour necrosis factor receptor superfamily member 19 3HCDH_N PF02737.18 gi|89255995|ref|YP_513357.1| - 0.11 12.4 0.0 0.17 11.8 0.0 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Glycos_transf_1 PF00534.20 gi|89255997|ref|YP_513359.1| - 4.6e-15 55.6 0.2 7.3e-15 54.9 0.2 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|89255997|ref|YP_513359.1| - 5.5e-14 52.8 0.0 9.4e-14 52.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|89255997|ref|YP_513359.1| - 2.3e-11 43.9 1.7 4.5e-11 42.9 1.7 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_4 PF13439.6 gi|89255997|ref|YP_513359.1| - 1.2e-09 38.4 0.0 2.2e-09 37.6 0.0 1.5 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|89255997|ref|YP_513359.1| - 0.1 13.0 0.0 0.21 12.0 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferases group 1 Asn_synthase PF00733.21 gi|89255998|ref|YP_513360.1| - 6.2e-107 358.3 0.0 7.5e-107 358.1 0.0 1.1 1 0 0 1 1 1 1 Asparagine synthase GATase_7 PF13537.6 gi|89255998|ref|YP_513360.1| - 3.4e-39 133.5 0.0 3e-38 130.5 0.0 2.1 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_6 PF13522.6 gi|89255998|ref|YP_513360.1| - 1.1e-38 132.4 0.0 2e-38 131.6 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain QueC PF06508.13 gi|89255998|ref|YP_513360.1| - 1.1e-06 28.2 0.0 2.5e-06 27.1 0.0 1.5 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC NAD_synthase PF02540.17 gi|89255998|ref|YP_513360.1| - 0.00012 21.3 0.1 0.00022 20.4 0.1 1.3 1 0 0 1 1 1 1 NAD synthase DUF3700 PF12481.8 gi|89255998|ref|YP_513360.1| - 0.00062 19.3 0.0 0.0019 17.7 0.0 1.8 2 1 0 2 2 2 1 Aluminium induced protein DegT_DnrJ_EryC1 PF01041.17 gi|89255999|ref|YP_513361.1| - 1.3e-89 301.1 0.0 1.5e-89 300.9 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|89255999|ref|YP_513361.1| - 1.3e-07 31.3 0.0 2.8e-07 30.1 0.0 1.5 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.21 gi|89255999|ref|YP_513361.1| - 6.1e-05 22.4 0.1 0.00011 21.5 0.1 1.5 1 1 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|89255999|ref|YP_513361.1| - 0.00016 20.3 0.2 0.00022 19.9 0.2 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 gi|89255999|ref|YP_513361.1| - 0.00067 18.7 0.0 0.00089 18.3 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V N_formyltrans_C PF18216.1 gi|89256000|ref|YP_513362.1| - 5.7e-30 102.8 0.4 1.2e-29 101.7 0.4 1.6 1 0 0 1 1 1 1 N-formyltransferase dimerization C-terminal domain Formyl_trans_N PF00551.19 gi|89256000|ref|YP_513362.1| - 2.1e-13 50.4 0.0 3.2e-13 49.8 0.0 1.2 1 0 0 1 1 1 1 Formyl transferase Polysacc_synt PF01943.17 gi|89256001|ref|YP_513363.1| - 4.9e-15 55.6 26.0 4.9e-15 55.6 26.0 2.6 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein MatE PF01554.18 gi|89256001|ref|YP_513363.1| - 8.4e-05 22.3 11.8 8.4e-05 22.3 11.8 4.3 1 1 4 5 5 5 1 MatE Glycos_transf_2 PF00535.26 gi|89256002|ref|YP_513364.1| - 2.2e-26 92.7 0.1 2.9e-26 92.3 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|89256002|ref|YP_513364.1| - 1.5e-17 64.3 0.0 2.1e-17 63.8 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|89256002|ref|YP_513364.1| - 0.0012 19.3 0.0 0.0029 18.1 0.0 1.6 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.9 gi|89256002|ref|YP_513364.1| - 0.0021 17.6 0.2 0.0034 16.9 0.2 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 NTP_transferase PF00483.23 gi|89256003|ref|YP_513365.1| - 1.1e-64 218.3 0.0 1.5e-64 218.0 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|89256003|ref|YP_513365.1| - 3.9e-08 33.8 0.0 5.8e-08 33.3 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain GDP_Man_Dehyd PF16363.5 gi|89256004|ref|YP_513366.1| - 4.8e-95 318.8 0.0 5.4e-95 318.6 0.0 1.0 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|89256004|ref|YP_513366.1| - 2.3e-61 207.4 0.1 2.7e-61 207.1 0.1 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.15 gi|89256004|ref|YP_513366.1| - 1.8e-15 56.9 0.0 9.7e-14 51.2 0.0 2.0 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.19 gi|89256004|ref|YP_513366.1| - 2e-13 50.0 0.1 5.6e-13 48.5 0.1 1.6 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.12 gi|89256004|ref|YP_513366.1| - 1.3e-12 47.5 0.0 2.2e-11 43.4 0.0 2.2 1 1 0 1 1 1 1 Male sterility protein RmlD_sub_bind PF04321.17 gi|89256004|ref|YP_513366.1| - 6.7e-09 35.3 0.0 9.7e-09 34.7 0.0 1.4 1 1 0 1 1 1 1 RmlD substrate binding domain adh_short PF00106.25 gi|89256004|ref|YP_513366.1| - 2.2e-05 24.0 0.1 0.031 13.7 0.0 2.2 2 0 0 2 2 2 2 short chain dehydrogenase Glyco_hydro_85 PF03644.13 gi|89256004|ref|YP_513366.1| - 0.049 13.0 0.0 0.067 12.6 0.0 1.1 1 0 0 1 1 1 0 Glycosyl hydrolase family 85 DDE_3 PF13358.6 gi|89256005|ref|YP_513367.1| - 9.9e-30 103.2 0.2 3.2e-29 101.6 0.0 1.8 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.16 gi|89256005|ref|YP_513367.1| - 0.0029 17.6 1.5 0.0084 16.2 0.6 2.3 2 1 0 2 2 2 1 Transposase HTH_29 PF13551.6 gi|89256005|ref|YP_513367.1| - 0.0033 17.4 0.0 0.008 16.2 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn helix HTH_40 PF14493.6 gi|89256005|ref|YP_513367.1| - 0.011 16.2 0.1 0.069 13.6 0.0 2.3 3 1 0 3 3 3 0 Helix-turn-helix domain HTH_28 PF13518.6 gi|89256005|ref|YP_513367.1| - 0.026 14.6 0.0 0.073 13.2 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain CENP-B_N PF04218.13 gi|89256005|ref|YP_513367.1| - 0.097 12.3 0.0 0.98 9.1 0.0 2.5 3 0 0 3 3 3 0 CENP-B N-terminal DNA-binding domain HTH_23 PF13384.6 gi|89256005|ref|YP_513367.1| - 0.12 12.2 0.0 0.34 10.8 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain rve PF00665.26 gi|89256005|ref|YP_513367.1| - 0.15 12.3 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 Integrase core domain DDE_Tnp_ISAZ013 PF07592.11 gi|89256005|ref|YP_513367.1| - 0.17 10.9 0.3 1.1 8.1 0.1 2.0 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain NTP_transferase PF00483.23 gi|89256006|ref|YP_513368.1| - 1.3e-67 227.9 0.3 6.5e-67 225.7 0.0 1.9 2 0 0 2 2 2 1 Nucleotidyl transferase MannoseP_isomer PF01050.18 gi|89256006|ref|YP_513368.1| - 5.2e-57 192.0 3.8 5.2e-57 192.0 3.8 1.8 2 0 0 2 2 2 1 Mannose-6-phosphate isomerase Cupin_2 PF07883.11 gi|89256006|ref|YP_513368.1| - 3e-10 39.7 0.0 6e-10 38.7 0.0 1.5 1 0 0 1 1 1 1 Cupin domain NTP_transf_3 PF12804.7 gi|89256006|ref|YP_513368.1| - 5.9e-06 26.7 0.0 1.8e-05 25.1 0.0 1.8 2 0 0 2 2 2 1 MobA-like NTP transferase domain Ectoine_synth PF06339.12 gi|89256006|ref|YP_513368.1| - 0.12 12.6 0.1 0.28 11.4 0.1 1.6 1 0 0 1 1 1 0 Ectoine synthase PGM_PMM_I PF02878.16 gi|89256007|ref|YP_513369.1| - 9.2e-25 87.0 0.0 1.8e-24 86.0 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_III PF02880.16 gi|89256007|ref|YP_513369.1| - 4.6e-17 62.3 0.0 1.2e-16 60.9 0.0 1.8 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_II PF02879.16 gi|89256007|ref|YP_513369.1| - 2.2e-14 53.9 0.0 1.3e-13 51.4 0.0 2.2 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.20 gi|89256007|ref|YP_513369.1| - 2.4e-07 30.8 0.0 8.3e-07 29.1 0.0 1.9 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Rho_RNA_bind PF07497.12 gi|89256008|ref|YP_513370.1| - 2.2e-29 101.1 0.0 3.8e-29 100.4 0.0 1.4 1 0 0 1 1 1 1 Rho termination factor, RNA-binding domain ATP-synt_ab PF00006.25 gi|89256008|ref|YP_513370.1| - 1.4e-24 87.0 0.1 2.1e-24 86.4 0.1 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain Rho_N PF07498.12 gi|89256008|ref|YP_513370.1| - 4.7e-13 48.8 0.5 1.2e-12 47.6 0.5 1.7 1 0 0 1 1 1 1 Rho termination factor, N-terminal domain AAA_25 PF13481.6 gi|89256008|ref|YP_513370.1| - 0.00063 19.4 0.1 0.0033 17.0 0.1 1.9 1 1 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|89256008|ref|YP_513370.1| - 0.00077 19.4 0.0 0.0013 18.6 0.0 1.3 1 0 0 1 1 1 1 NACHT domain AAA PF00004.29 gi|89256008|ref|YP_513370.1| - 0.0044 17.4 0.1 0.011 16.1 0.1 1.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|89256008|ref|YP_513370.1| - 0.023 14.9 0.0 0.055 13.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain DUF3086 PF11285.8 gi|89256008|ref|YP_513370.1| - 0.074 12.1 0.0 0.16 11.0 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3086) ResIII PF04851.15 gi|89256008|ref|YP_513370.1| - 0.085 12.8 0.0 0.15 12.1 0.0 1.5 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit Thioredoxin PF00085.20 gi|89256009|ref|YP_513371.1| - 1.2e-32 111.9 0.1 1.4e-32 111.8 0.1 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|89256009|ref|YP_513371.1| - 2.6e-09 37.5 0.3 2.2e-08 34.5 0.3 1.9 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.6 gi|89256009|ref|YP_513371.1| - 4.4e-08 33.3 0.0 3.5e-07 30.5 0.0 2.0 1 1 0 1 1 1 1 Thioredoxin-like TraF PF13728.6 gi|89256009|ref|YP_513371.1| - 3.4e-05 23.8 0.0 4.3e-05 23.4 0.0 1.1 1 0 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin_7 PF13899.6 gi|89256009|ref|YP_513371.1| - 5.2e-05 23.3 0.0 7.8e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_3 PF13192.6 gi|89256009|ref|YP_513371.1| - 9.5e-05 22.4 0.1 0.00012 22.1 0.1 1.2 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_9 PF14595.6 gi|89256009|ref|YP_513371.1| - 0.00011 22.0 0.1 0.00012 21.8 0.1 1.1 1 0 0 1 1 1 1 Thioredoxin OST3_OST6 PF04756.13 gi|89256009|ref|YP_513371.1| - 0.0003 20.2 0.0 0.00032 20.1 0.0 1.1 1 0 0 1 1 1 1 OST3 / OST6 family, transporter family Glutaredoxin PF00462.24 gi|89256009|ref|YP_513371.1| - 0.00032 20.8 0.0 0.00062 19.9 0.0 1.5 1 0 0 1 1 1 1 Glutaredoxin Thioredoxin_6 PF13848.6 gi|89256009|ref|YP_513371.1| - 0.00032 20.7 0.1 0.083 12.8 0.0 1.5 1 1 1 2 2 2 2 Thioredoxin-like domain AhpC-TSA PF00578.21 gi|89256009|ref|YP_513371.1| - 0.00045 20.1 0.0 0.00053 19.9 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Thioredoxin_5 PF13743.6 gi|89256009|ref|YP_513371.1| - 0.00095 18.9 0.3 0.38 10.4 0.0 2.1 1 1 1 2 2 2 2 Thioredoxin DUF836 PF05768.14 gi|89256009|ref|YP_513371.1| - 0.00098 19.5 0.1 0.0022 18.4 0.0 1.6 2 0 0 2 2 2 1 Glutaredoxin-like domain (DUF836) Redoxin PF08534.10 gi|89256009|ref|YP_513371.1| - 0.0016 18.2 0.0 0.002 17.9 0.0 1.3 1 0 0 1 1 1 1 Redoxin DSBA PF01323.20 gi|89256009|ref|YP_513371.1| - 0.0025 17.6 0.5 0.039 13.7 0.1 2.0 1 1 1 2 2 2 1 DSBA-like thioredoxin domain HyaE PF07449.11 gi|89256009|ref|YP_513371.1| - 0.049 13.6 0.0 0.065 13.2 0.0 1.2 1 0 0 1 1 1 0 Hydrogenase-1 expression protein HyaE Ppx-GppA PF02541.16 gi|89256010|ref|YP_513372.1| - 3.6e-65 220.2 1.6 4e-65 220.1 1.6 1.0 1 0 0 1 1 1 1 Ppx/GppA phosphatase family FtsA PF14450.6 gi|89256010|ref|YP_513372.1| - 0.00032 21.1 2.4 0.0022 18.4 0.2 2.4 2 2 0 2 2 2 1 Cell division protein FtsA DDR PF08841.10 gi|89256010|ref|YP_513372.1| - 0.0021 17.1 0.0 0.0034 16.4 0.0 1.4 1 0 0 1 1 1 1 Diol dehydratase reactivase ATPase-like domain MreB_Mbl PF06723.13 gi|89256010|ref|YP_513372.1| - 0.016 14.0 0.5 0.033 13.0 0.3 1.6 1 1 1 2 2 2 0 MreB/Mbl protein CBFD_NFYB_HMF PF00808.23 gi|89256010|ref|YP_513372.1| - 0.018 15.3 0.0 0.037 14.3 0.0 1.5 1 0 0 1 1 1 0 Histone-like transcription factor (CBF/NF-Y) and archaeal histone TED_complement PF07678.14 gi|89256010|ref|YP_513372.1| - 0.076 12.0 0.0 0.11 11.5 0.0 1.3 1 0 0 1 1 1 0 A-macroglobulin TED domain UDG PF03167.19 gi|89256010|ref|YP_513372.1| - 0.16 11.9 0.0 0.26 11.3 0.0 1.4 1 0 0 1 1 1 0 Uracil DNA glycosylase superfamily DDE_Tnp_1_2 PF13586.6 gi|89256011|ref|YP_513373.1| - 1.2e-13 51.2 0.0 2.2e-13 50.4 0.0 1.5 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|89256011|ref|YP_513373.1| - 5.7e-12 45.7 2.0 5.1e-11 42.6 2.0 2.0 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 gi|89256011|ref|YP_513373.1| - 8e-08 32.4 0.0 1.2e-07 31.8 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF4096 PF13340.6 gi|89256011|ref|YP_513373.1| - 0.0066 16.6 0.0 0.013 15.7 0.0 1.5 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) MgsA_C PF12002.8 gi|89256012|ref|YP_513374.1| - 1.2e-59 201.0 0.2 2e-59 200.3 0.2 1.3 1 0 0 1 1 1 1 MgsA AAA+ ATPase C terminal AAA_assoc_2 PF16193.5 gi|89256012|ref|YP_513374.1| - 5.8e-16 58.6 0.0 1.1e-15 57.7 0.0 1.5 1 0 0 1 1 1 1 AAA C-terminal domain DUF4895 PF16236.5 gi|89256012|ref|YP_513374.1| - 0.061 13.1 0.5 1.5 8.5 0.1 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4895) FYRN PF05964.14 gi|89256012|ref|YP_513374.1| - 0.075 12.9 0.2 0.17 11.7 0.2 1.5 1 0 0 1 1 1 0 F/Y-rich N-terminus RNA_pol_A_CTD PF03118.15 gi|89256013|ref|YP_513375.1| - 8.5e-25 86.3 1.7 1.8e-24 85.3 1.7 1.6 1 0 0 1 1 1 1 Bacterial RNA polymerase, alpha chain C terminal domain RNA_pol_L PF01193.24 gi|89256013|ref|YP_513375.1| - 6.6e-11 41.5 0.0 1.3e-10 40.5 0.0 1.5 1 1 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_A_bac PF01000.26 gi|89256013|ref|YP_513375.1| - 2.1e-06 28.1 0.2 6e-06 26.6 0.1 1.8 2 0 0 2 2 2 1 RNA polymerase Rpb3/RpoA insert domain Ferritin PF00210.24 gi|89256014|ref|YP_513376.1| - 1e-19 70.9 1.4 1.3e-19 70.6 1.4 1.0 1 0 0 1 1 1 1 Ferritin-like domain Rubrerythrin PF02915.17 gi|89256014|ref|YP_513376.1| - 0.036 14.5 2.1 0.84 10.0 0.9 2.1 2 0 0 2 2 2 0 Rubrerythrin DUF2570 PF10828.8 gi|89256014|ref|YP_513376.1| - 0.5 10.2 2.7 1.6 8.6 0.1 2.6 2 1 1 3 3 3 0 Protein of unknown function (DUF2570) TatD_DNase PF01026.21 gi|89256015|ref|YP_513377.1| - 3.9e-82 275.5 0.9 4.4e-82 275.3 0.9 1.0 1 0 0 1 1 1 1 TatD related DNase DUF3473 PF11959.8 gi|89256015|ref|YP_513377.1| - 0.17 11.9 0.0 0.32 11.0 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3473) DDE_Tnp_1_2 PF13586.6 gi|89256016|ref|YP_513378.1| - 1e-13 51.4 0.0 1.9e-13 50.6 0.0 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|89256016|ref|YP_513378.1| - 4.3e-12 46.1 2.0 3.9e-11 43.0 2.0 1.9 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 gi|89256016|ref|YP_513378.1| - 7e-08 32.6 0.0 9.9e-08 32.1 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.6 gi|89256016|ref|YP_513378.1| - 0.00018 21.2 0.2 0.00024 20.8 0.2 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease DUF4096 PF13340.6 gi|89256016|ref|YP_513378.1| - 0.0057 16.8 0.0 0.011 15.9 0.0 1.5 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) ABC_tran PF00005.27 gi|89256017|ref|YP_513379.1| - 7.4e-31 107.5 0.0 1.3e-30 106.7 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|89256017|ref|YP_513379.1| - 1.5e-11 44.7 3.1 2.1e-07 31.1 0.1 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|89256017|ref|YP_513379.1| - 0.00096 19.0 7.0 0.03 14.1 0.3 2.9 2 1 2 4 4 4 2 AAA ATPase domain SMC_N PF02463.19 gi|89256017|ref|YP_513379.1| - 0.0016 17.9 1.8 0.092 12.2 0.2 2.8 2 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|89256017|ref|YP_513379.1| - 0.0025 17.5 0.3 0.0053 16.5 0.3 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF87 PF01935.17 gi|89256017|ref|YP_513379.1| - 0.0034 17.5 3.0 0.02 15.0 3.0 2.1 1 1 0 1 1 1 1 Helicase HerA, central domain AAA_27 PF13514.6 gi|89256017|ref|YP_513379.1| - 0.0051 16.4 0.0 0.0084 15.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|89256017|ref|YP_513379.1| - 0.0052 16.7 2.0 0.098 12.6 0.1 2.8 2 1 1 3 3 3 1 RsgA GTPase AAA_23 PF13476.6 gi|89256017|ref|YP_513379.1| - 0.0066 17.0 0.8 0.0066 17.0 0.8 2.0 2 1 0 2 2 2 1 AAA domain SRP54 PF00448.22 gi|89256017|ref|YP_513379.1| - 0.0089 15.7 0.0 0.016 14.9 0.0 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain DUF4162 PF13732.6 gi|89256017|ref|YP_513379.1| - 0.013 16.2 0.3 0.031 15.0 0.3 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4162) AAA_30 PF13604.6 gi|89256017|ref|YP_513379.1| - 0.03 14.0 0.1 0.058 13.1 0.1 1.7 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|89256017|ref|YP_513379.1| - 0.054 13.2 0.1 11 5.7 0.0 2.3 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_5 PF07728.14 gi|89256017|ref|YP_513379.1| - 0.11 12.5 0.1 2.4 8.2 0.0 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|89256017|ref|YP_513379.1| - 0.14 12.4 0.3 0.48 10.7 0.1 2.1 2 1 0 2 2 2 0 AAA domain ABC2_membrane PF01061.24 gi|89256018|ref|YP_513380.1| - 1.7e-31 109.3 22.4 1.7e-31 109.3 22.4 1.9 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|89256018|ref|YP_513380.1| - 2e-06 27.2 31.0 2e-06 27.2 31.0 1.9 2 0 0 2 2 2 1 ABC-2 family transporter protein Glycos_transf_2 PF00535.26 gi|89256019|ref|YP_513381.1| - 1e-24 87.3 0.0 1.5e-24 86.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_7N PF13733.6 gi|89256019|ref|YP_513381.1| - 0.0004 20.0 0.0 0.027 14.1 0.0 2.4 2 0 0 2 2 2 1 N-terminal region of glycosyl transferase group 7 Glyco_tranf_2_3 PF13641.6 gi|89256019|ref|YP_513381.1| - 0.00042 20.3 0.0 0.00055 19.9 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|89256019|ref|YP_513381.1| - 0.0039 16.7 0.0 0.0065 16.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Thioredoxin_6 PF13848.6 gi|89256019|ref|YP_513381.1| - 0.0062 16.5 0.1 0.011 15.6 0.1 1.3 1 0 0 1 1 1 1 Thioredoxin-like domain Glyco_transf_21 PF13506.6 gi|89256019|ref|YP_513381.1| - 0.011 15.2 0.0 0.036 13.5 0.0 1.7 1 1 1 2 2 2 0 Glycosyl transferase family 21 NAD_kinase PF01513.21 gi|89256020|ref|YP_513382.1| - 1.4e-53 182.0 0.7 4.4e-53 180.4 0.7 1.6 1 1 0 1 1 1 1 ATP-NAD kinase Epimerase_2 PF02350.19 gi|89256020|ref|YP_513382.1| - 0.012 14.5 0.1 0.02 13.8 0.1 1.3 1 0 0 1 1 1 0 UDP-N-acetylglucosamine 2-epimerase DAGK_cat PF00781.24 gi|89256020|ref|YP_513382.1| - 0.031 13.9 0.0 0.065 12.8 0.0 1.4 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain His_biosynth PF00977.21 gi|89256020|ref|YP_513382.1| - 0.057 12.9 0.1 6.8 6.1 0.1 2.1 2 0 0 2 2 2 0 Histidine biosynthesis protein TIR-like PF10137.9 gi|89256020|ref|YP_513382.1| - 0.12 12.3 0.1 0.36 10.8 0.0 1.8 2 0 0 2 2 2 0 Predicted nucleotide-binding protein containing TIR-like domain LysE PF01810.18 gi|89256021|ref|YP_513383.1| - 6.5e-25 87.7 11.6 7.5e-25 87.5 11.6 1.0 1 0 0 1 1 1 1 LysE type translocator DUF808 PF05661.12 gi|89256021|ref|YP_513383.1| - 0.053 12.6 0.5 0.073 12.1 0.4 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF808) DDE_3 PF13358.6 gi|89256022|ref|YP_513384.1| - 2.3e-30 105.3 0.1 7.9e-30 103.5 0.0 1.8 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.16 gi|89256022|ref|YP_513384.1| - 0.0029 17.6 1.5 0.0084 16.2 0.6 2.3 2 1 0 2 2 2 1 Transposase HTH_29 PF13551.6 gi|89256022|ref|YP_513384.1| - 0.0033 17.4 0.0 0.008 16.2 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn helix HTH_40 PF14493.6 gi|89256022|ref|YP_513384.1| - 0.0099 16.3 0.1 0.069 13.6 0.0 2.3 3 1 0 3 3 3 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|89256022|ref|YP_513384.1| - 0.026 14.6 0.0 0.073 13.2 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|89256022|ref|YP_513384.1| - 0.12 12.2 0.0 0.34 10.8 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain rve PF00665.26 gi|89256022|ref|YP_513384.1| - 0.15 12.3 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 Integrase core domain DDE_Tnp_ISAZ013 PF07592.11 gi|89256022|ref|YP_513384.1| - 0.17 10.9 0.3 1.1 8.1 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain HTH_5 PF01022.20 gi|89256023|ref|YP_513385.1| - 7.4e-16 57.8 1.9 2.3e-15 56.2 1.6 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|89256023|ref|YP_513385.1| - 6.1e-10 39.0 0.5 1.1e-09 38.2 0.5 1.4 2 0 0 2 2 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|89256023|ref|YP_513385.1| - 2.7e-06 27.2 0.1 1.1e-05 25.2 0.1 1.9 2 0 0 2 2 2 1 MarR family TrmB PF01978.19 gi|89256023|ref|YP_513385.1| - 2e-05 24.4 0.1 3.2e-05 23.7 0.1 1.4 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|89256023|ref|YP_513385.1| - 4.6e-05 22.9 0.1 0.00022 20.7 0.1 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|89256023|ref|YP_513385.1| - 9.4e-05 22.1 0.2 0.00026 20.7 0.2 1.8 1 1 0 1 1 1 1 IclR helix-turn-helix domain HTH_34 PF13601.6 gi|89256023|ref|YP_513385.1| - 0.00073 19.7 0.1 0.0012 18.9 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 gi|89256023|ref|YP_513385.1| - 0.0008 19.3 0.1 0.001 19.0 0.1 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR PF01047.22 gi|89256023|ref|YP_513385.1| - 0.001 18.9 0.1 0.0097 15.8 0.1 2.0 2 0 0 2 2 2 1 MarR family TFIIE_alpha PF02002.17 gi|89256023|ref|YP_513385.1| - 0.0012 18.7 0.1 0.002 18.0 0.1 1.4 1 1 0 1 1 1 1 TFIIE alpha subunit Rrf2 PF02082.20 gi|89256023|ref|YP_513385.1| - 0.0017 18.7 0.1 0.0028 17.9 0.1 1.7 1 1 0 1 1 1 1 Transcriptional regulator Cdc6_C PF09079.11 gi|89256023|ref|YP_513385.1| - 0.0055 16.6 0.0 0.009 16.0 0.0 1.5 1 1 0 1 1 1 1 CDC6, C terminal winged helix domain Phage_hub_GP28 PF11110.8 gi|89256023|ref|YP_513385.1| - 0.023 14.6 0.0 0.026 14.4 0.0 1.2 1 0 0 1 1 1 0 Baseplate hub distal subunit HTH_27 PF13463.6 gi|89256023|ref|YP_513385.1| - 0.028 14.9 0.0 0.053 14.0 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_10 PF04967.12 gi|89256023|ref|YP_513385.1| - 0.029 14.2 0.0 0.053 13.3 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain HxlR PF01638.17 gi|89256023|ref|YP_513385.1| - 0.036 13.9 0.0 0.045 13.6 0.0 1.2 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_11 PF08279.12 gi|89256023|ref|YP_513385.1| - 0.072 13.0 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 HTH domain STN1_2 PF09170.10 gi|89256023|ref|YP_513385.1| - 0.087 13.0 0.1 0.12 12.6 0.1 1.2 1 1 0 1 1 1 0 CST, Suppressor of cdc thirteen homolog, complex subunit STN1 Rhodanese PF00581.20 gi|89256024|ref|YP_513386.1| - 2.8e-12 47.1 0.1 5.5e-12 46.2 0.1 1.5 1 1 0 1 1 1 1 Rhodanese-like domain DUF2892 PF11127.8 gi|89256024|ref|YP_513386.1| - 1.9e-08 34.2 0.6 2.5e-08 33.8 0.6 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2892) DUF2207 PF09972.9 gi|89256024|ref|YP_513386.1| - 0.033 12.9 0.0 0.037 12.8 0.0 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) NAD_binding_8 PF13450.6 gi|89256025|ref|YP_513387.1| - 9.9e-06 25.7 0.1 1.1e-05 25.6 0.1 1.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|89256025|ref|YP_513387.1| - 0.0031 16.8 0.0 0.0031 16.8 0.0 1.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|89256025|ref|YP_513387.1| - 0.1 12.1 0.1 0.1 12.1 0.1 1.0 1 0 0 1 1 1 0 FAD dependent oxidoreductase GMC_oxred_N PF00732.19 gi|89256025|ref|YP_513387.1| - 0.12 11.8 0.0 0.12 11.7 0.0 1.0 1 0 0 1 1 1 0 GMC oxidoreductase FAD_binding_2 PF00890.24 gi|89256025|ref|YP_513387.1| - 0.13 11.4 0.1 0.13 11.4 0.1 1.0 1 0 0 1 1 1 0 FAD binding domain Hydantoinase_A PF01968.18 gi|89256025|ref|YP_513387.1| - 0.13 11.5 0.0 0.14 11.4 0.0 1.0 1 0 0 1 1 1 0 Hydantoinase/oxoprolinase Pyr_redox_3 PF13738.6 gi|89256025|ref|YP_513387.1| - 0.18 11.1 0.1 0.19 10.9 0.1 1.0 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 gi|89256026|ref|YP_513388.1| - 1.3e-38 133.0 0.4 1.4e-38 132.8 0.4 1.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|89256026|ref|YP_513388.1| - 1e-18 67.6 1.9 1.1e-17 64.3 0.4 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|89256026|ref|YP_513388.1| - 3.3e-09 36.8 0.0 0.0011 18.6 0.0 3.0 3 0 0 3 3 3 3 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 gi|89256026|ref|YP_513388.1| - 4.3e-09 36.1 1.1 4.6e-08 32.7 1.1 2.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.6 gi|89256026|ref|YP_513388.1| - 2.2e-05 23.8 0.0 3e-05 23.3 0.0 1.1 1 0 0 1 1 1 1 L-lysine 6-monooxygenase (NADPH-requiring) TrkA_N PF02254.18 gi|89256026|ref|YP_513388.1| - 2.5e-05 24.5 0.4 0.0065 16.7 0.1 2.5 1 1 1 2 2 2 1 TrkA-N domain 3HCDH_N PF02737.18 gi|89256026|ref|YP_513388.1| - 4e-05 23.6 0.0 7.2e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Lycopene_cycl PF05834.12 gi|89256026|ref|YP_513388.1| - 9.4e-05 21.6 0.0 0.00026 20.2 0.0 1.6 1 1 1 2 2 2 1 Lycopene cyclase protein UDPG_MGDP_dh_N PF03721.14 gi|89256026|ref|YP_513388.1| - 0.00019 21.1 0.5 0.00036 20.2 0.1 1.7 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HI0933_like PF03486.14 gi|89256026|ref|YP_513388.1| - 0.00023 20.0 1.0 0.026 13.2 0.1 2.9 2 1 1 3 3 3 1 HI0933-like protein NAD_binding_9 PF13454.6 gi|89256026|ref|YP_513388.1| - 0.00056 19.9 0.3 1.3 9.0 0.0 3.4 3 1 1 4 4 4 1 FAD-NAD(P)-binding NAD_binding_8 PF13450.6 gi|89256026|ref|YP_513388.1| - 0.0007 19.8 0.0 0.0022 18.2 0.0 1.8 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 gi|89256026|ref|YP_513388.1| - 0.0011 18.2 0.4 0.06 12.4 0.1 2.8 2 1 1 3 3 3 1 Glucose inhibited division protein A NAD_Gly3P_dh_N PF01210.23 gi|89256026|ref|YP_513388.1| - 0.0021 18.0 0.1 0.043 13.8 0.0 2.2 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DUF1188 PF06690.11 gi|89256026|ref|YP_513388.1| - 0.0022 17.6 0.8 0.0047 16.5 0.5 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF1188) NAD_binding_2 PF03446.15 gi|89256026|ref|YP_513388.1| - 0.0061 16.7 0.0 0.0099 16.1 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase AlaDh_PNT_C PF01262.21 gi|89256026|ref|YP_513388.1| - 0.007 15.7 0.0 0.01 15.1 0.0 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Shikimate_DH PF01488.20 gi|89256026|ref|YP_513388.1| - 0.011 15.8 0.0 0.025 14.6 0.0 1.7 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase 2-Hacid_dh_C PF02826.19 gi|89256026|ref|YP_513388.1| - 0.012 15.0 0.0 0.019 14.3 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|89256026|ref|YP_513388.1| - 0.012 15.1 0.0 0.023 14.3 0.0 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain Transketolase_C PF02780.20 gi|89256026|ref|YP_513388.1| - 0.013 15.4 0.0 0.036 13.9 0.0 1.7 1 0 0 1 1 1 0 Transketolase, C-terminal domain Epimerase PF01370.21 gi|89256026|ref|YP_513388.1| - 0.041 13.3 0.0 0.065 12.7 0.0 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family DFP PF04127.15 gi|89256026|ref|YP_513388.1| - 0.047 13.5 0.0 0.075 12.8 0.0 1.4 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein Thi4 PF01946.17 gi|89256026|ref|YP_513388.1| - 0.05 12.8 0.1 0.16 11.2 0.0 1.8 2 1 0 2 2 2 0 Thi4 family ApbA PF02558.16 gi|89256026|ref|YP_513388.1| - 0.095 12.3 0.0 0.19 11.4 0.0 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Sacchrp_dh_NADP PF03435.18 gi|89256026|ref|YP_513388.1| - 0.1 12.9 0.0 0.18 12.1 0.0 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain NAD_binding_7 PF13241.6 gi|89256026|ref|YP_513388.1| - 0.1 13.0 0.1 0.26 11.7 0.0 1.8 2 0 0 2 2 1 0 Putative NAD(P)-binding FAD_binding_3 PF01494.19 gi|89256026|ref|YP_513388.1| - 0.17 11.1 0.0 0.29 10.4 0.0 1.3 1 0 0 1 1 1 0 FAD binding domain Pyr_redox_dim PF02852.22 gi|89256027|ref|YP_513389.1| - 4e-13 49.6 0.0 7.5e-13 48.7 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Rhodanese PF00581.20 gi|89256027|ref|YP_513389.1| - 1.7e-12 47.8 0.0 5.4e-11 43.0 0.0 2.2 2 0 0 2 2 2 1 Rhodanese-like domain Lactamase_B PF00753.27 gi|89256028|ref|YP_513390.1| - 9.7e-15 55.1 0.4 1.8e-13 50.9 0.4 2.0 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily TauE PF01925.19 gi|89256029|ref|YP_513391.1| - 5.2e-51 173.6 36.1 6.3e-51 173.3 36.1 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE Trep_Strep PF09605.10 gi|89256029|ref|YP_513391.1| - 0.014 15.4 7.4 0.014 15.4 7.4 4.3 1 1 3 4 4 4 0 Hypothetical bacterial integral membrane protein (Trep_Strep) TssN PF17555.2 gi|89256029|ref|YP_513391.1| - 0.12 11.7 23.5 0.055 12.8 8.0 2.6 1 1 2 3 3 3 0 Type VI secretion system, TssN 2OG-FeII_Oxy_4 PF13661.6 gi|89256030|ref|YP_513392.1| - 1e-19 71.0 0.1 1.7e-19 70.3 0.1 1.3 1 0 0 1 1 1 1 2OG-Fe(II) oxygenase superfamily 2OG-FeII_Oxy_3 PF13640.6 gi|89256030|ref|YP_513392.1| - 1.7e-19 70.5 0.0 2.4e-19 70.0 0.0 1.2 1 0 0 1 1 1 1 2OG-Fe(II) oxygenase superfamily 2OG-FeII_Oxy PF03171.20 gi|89256030|ref|YP_513392.1| - 0.00048 20.6 0.0 0.00077 19.9 0.0 1.3 1 0 0 1 1 1 1 2OG-Fe(II) oxygenase superfamily 2OG-FeII_Oxy_5 PF13759.6 gi|89256030|ref|YP_513392.1| - 0.015 15.7 0.0 0.036 14.5 0.0 1.5 1 1 0 1 1 1 0 Putative 2OG-Fe(II) oxygenase CxxCxxCC PF03692.15 gi|89256031|ref|YP_513393.1| - 8.1e-06 26.4 11.1 1.8e-05 25.3 11.1 1.6 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain SmpA_OmlA PF04355.13 gi|89256033|ref|YP_513395.1| - 0.0022 17.8 0.0 0.0039 16.9 0.0 1.4 1 0 0 1 1 1 1 SmpA / OmlA family CAP_assoc_N PF14504.6 gi|89256033|ref|YP_513395.1| - 0.048 13.4 0.1 0.071 12.9 0.1 1.3 1 0 0 1 1 1 0 CAP-associated N-terminal NusB PF01029.18 gi|89256034|ref|YP_513396.1| - 3.2e-28 98.6 1.7 3.6e-28 98.5 1.7 1.0 1 0 0 1 1 1 1 NusB family DnaB_2 PF07261.11 gi|89256034|ref|YP_513396.1| - 0.039 13.7 2.6 4.7 7.0 0.2 2.4 1 1 1 2 2 2 0 Replication initiation and membrane attachment pRN1_helical PF13010.6 gi|89256034|ref|YP_513396.1| - 0.054 13.5 0.1 0.082 12.9 0.1 1.4 1 0 0 1 1 1 0 Primase helical domain DNApol3-delta_C PF09115.10 gi|89256034|ref|YP_513396.1| - 0.062 13.8 0.1 0.094 13.2 0.1 1.3 1 0 0 1 1 1 0 DNA polymerase III, delta subunit, C terminal CN_hydrolase PF00795.22 gi|89256035|ref|YP_513397.1| - 1.1e-27 97.0 0.0 1.4e-27 96.7 0.0 1.0 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase Yos9_DD PF17880.1 gi|89256035|ref|YP_513397.1| - 0.016 15.3 3.6 0.7 10.0 0.3 2.9 3 0 0 3 3 3 0 Yos9 dimerzation domain dCache_1 PF02743.18 gi|89256035|ref|YP_513397.1| - 0.019 14.8 6.1 0.43 10.3 0.1 2.4 3 0 0 3 3 3 0 Cache domain DUF3568 PF12092.8 gi|89256036|ref|YP_513398.1| - 1.1e-20 74.0 3.9 1.6e-20 73.4 3.9 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3568) PhdYeFM_antitox PF02604.19 gi|89256036|ref|YP_513398.1| - 0.088 12.6 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 Antitoxin Phd_YefM, type II toxin-antitoxin system Aminotran_1_2 PF00155.21 gi|89256039|ref|YP_513401.1| - 1.2e-26 93.8 0.0 1.4e-26 93.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DUF1707 PF08044.11 gi|89256039|ref|YP_513401.1| - 0.12 12.4 0.0 0.27 11.4 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1707) Aminotran_1_2 PF00155.21 gi|89256040|ref|YP_513402.1| - 1.4e-13 50.8 0.0 1.7e-13 50.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Peptidase_C5 PF00770.18 gi|89256040|ref|YP_513402.1| - 0.033 13.9 0.0 0.043 13.5 0.0 1.2 1 0 0 1 1 1 0 Adenovirus endoprotease tRNA-synt_2b PF00587.25 gi|89256041|ref|YP_513403.1| - 2.9e-43 147.9 0.0 5.9e-43 146.9 0.0 1.5 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA_edit PF04073.15 gi|89256041|ref|YP_513403.1| - 1.4e-25 89.8 0.0 2.4e-25 89.0 0.0 1.4 1 0 0 1 1 1 1 Aminoacyl-tRNA editing domain HGTP_anticodon PF03129.20 gi|89256041|ref|YP_513403.1| - 4e-21 75.0 0.1 7.5e-21 74.1 0.1 1.5 1 0 0 1 1 1 1 Anticodon binding domain DsbB PF02600.16 gi|89256043|ref|YP_513405.1| - 5.1e-10 40.0 9.8 5.1e-10 40.0 9.8 2.8 1 1 2 3 3 3 2 Disulfide bond formation protein DsbB AA_permease_2 PF13520.6 gi|89256043|ref|YP_513405.1| - 0.14 11.0 14.0 0.23 10.2 14.0 1.3 1 1 0 1 1 1 0 Amino acid permease SufE PF02657.15 gi|89256044|ref|YP_513406.1| - 1e-43 148.1 0.0 1.1e-43 147.9 0.0 1.0 1 0 0 1 1 1 1 Fe-S metabolism associated domain HEM4 PF02602.15 gi|89256045|ref|YP_513407.1| - 3.4e-20 72.4 0.0 4.1e-20 72.1 0.0 1.1 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD TraI_2B PF18340.1 gi|89256045|ref|YP_513407.1| - 0.19 11.8 0.0 0.36 10.9 0.0 1.4 1 0 0 1 1 1 0 DNA relaxase TraI 2B/2B-like domain CLZ PF16526.5 gi|89256046|ref|YP_513408.1| - 0.27 11.6 7.2 0.6 10.5 0.4 3.2 3 0 0 3 3 3 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Meis_PKNOX_N PF16493.5 gi|89256046|ref|YP_513408.1| - 0.47 10.8 5.7 14 6.1 0.1 3.4 3 0 0 3 3 3 0 N-terminal of Homeobox Meis and PKNOX1 APG6_N PF17675.1 gi|89256046|ref|YP_513408.1| - 0.49 10.9 12.4 0.17 12.4 0.4 3.3 3 0 0 3 3 3 0 Apg6 coiled-coil region Hrs_helical PF12210.8 gi|89256046|ref|YP_513408.1| - 0.7 10.5 15.1 1.2 9.7 0.8 4.0 4 1 0 4 4 4 0 Hepatocyte growth factor-regulated tyrosine kinase substrate Seryl_tRNA_N PF02403.22 gi|89256046|ref|YP_513408.1| - 6.5 7.0 20.4 4.4 7.6 1.1 3.5 2 1 0 3 3 3 0 Seryl-tRNA synthetase N-terminal domain HemY_N PF07219.13 gi|89256047|ref|YP_513409.1| - 0.0016 18.6 5.6 0.0016 18.6 5.6 2.9 3 0 0 3 3 3 1 HemY protein N-terminus Njmu-R1 PF15053.6 gi|89256047|ref|YP_513409.1| - 0.4 9.7 6.2 0.056 12.5 2.4 1.4 2 0 0 2 2 2 0 Mjmu-R1-like protein family ExbD PF02472.16 gi|89256047|ref|YP_513409.1| - 0.69 10.1 4.6 33 4.6 3.1 2.5 2 0 0 2 2 2 0 Biopolymer transport protein ExbD/TolR Lactamase_B PF00753.27 gi|89256048|ref|YP_513410.1| - 1.2e-17 64.5 0.2 6.4e-17 62.2 0.2 1.9 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily HAGH_C PF16123.5 gi|89256048|ref|YP_513410.1| - 4e-13 49.7 0.1 6.1e-13 49.1 0.1 1.3 1 0 0 1 1 1 1 Hydroxyacylglutathione hydrolase C-terminus Lactamase_B_2 PF12706.7 gi|89256048|ref|YP_513410.1| - 1.3e-05 24.8 0.1 2.3e-05 24.0 0.1 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Surp PF01805.20 gi|89256048|ref|YP_513410.1| - 0.033 14.2 0.1 8.5 6.5 0.0 2.8 2 0 0 2 2 2 0 Surp module Lactamase_B_3 PF13483.6 gi|89256048|ref|YP_513410.1| - 0.036 13.9 0.0 0.051 13.5 0.0 1.3 1 0 0 1 1 1 0 Beta-lactamase superfamily domain SPOR PF05036.13 gi|89256049|ref|YP_513411.1| - 8.9e-11 42.0 0.1 2.4e-10 40.6 0.0 1.8 2 0 0 2 2 2 1 Sporulation related domain CD34_antigen PF06365.12 gi|89256049|ref|YP_513411.1| - 0.054 13.1 4.8 0.15 11.7 4.7 1.8 1 1 0 1 1 1 0 CD34/Podocalyxin family EMC3_TMCO1 PF01956.16 gi|89256049|ref|YP_513411.1| - 0.11 12.2 1.0 0.18 11.5 1.0 1.3 1 0 0 1 1 1 0 Integral membrane protein EMC3/TMCO1-like GntP_permease PF02447.16 gi|89256049|ref|YP_513411.1| - 0.18 10.4 0.2 0.25 10.0 0.2 1.1 1 0 0 1 1 1 0 GntP family permease O-antigen_lig PF13425.6 gi|89256049|ref|YP_513411.1| - 0.24 10.1 5.7 0.31 9.8 5.7 1.1 1 0 0 1 1 1 0 O-antigen ligase like membrane protein CSG2 PF16965.5 gi|89256049|ref|YP_513411.1| - 0.29 10.0 3.7 0.39 9.6 3.7 1.2 1 0 0 1 1 1 0 Ceramide synthase regulator Ureide_permease PF07168.11 gi|89256049|ref|YP_513411.1| - 0.33 9.7 2.1 0.44 9.2 2.1 1.1 1 0 0 1 1 1 0 Ureide permease ARD PF03079.14 gi|89256049|ref|YP_513411.1| - 0.83 9.8 7.1 0.66 10.1 5.0 1.9 1 1 1 2 2 2 0 ARD/ARD' family SID-1_RNA_chan PF13965.6 gi|89256049|ref|YP_513411.1| - 1.5 7.1 5.2 2.1 6.7 5.2 1.1 1 0 0 1 1 1 0 dsRNA-gated channel SID-1 DUF4834 PF16118.5 gi|89256049|ref|YP_513411.1| - 7.4 7.6 9.5 0.13 13.2 1.3 2.2 2 1 1 3 3 3 0 Domain of unknown function (DUF4834) FAM176 PF14851.6 gi|89256049|ref|YP_513411.1| - 8.3 6.1 7.1 0.33 10.6 0.9 1.8 2 0 0 2 2 2 0 FAM176 family MAP17 PF15807.5 gi|89256049|ref|YP_513411.1| - 8.9 6.6 10.1 0.52 10.6 4.0 2.0 2 1 0 2 2 2 0 Membrane-associated protein 117 kDa, PDZK1-interacting protein 1 FeoA PF04023.14 gi|89256050|ref|YP_513412.1| - 1e-05 25.7 0.0 1.3e-05 25.4 0.0 1.1 1 0 0 1 1 1 1 FeoA domain SEA PF01390.20 gi|89256051|ref|YP_513413.1| - 0.0062 16.6 1.5 0.0062 16.6 1.5 3.2 3 1 0 3 3 3 1 SEA domain TcpA PF05946.12 gi|89256051|ref|YP_513413.1| - 0.026 14.6 1.0 0.058 13.5 0.3 2.0 2 0 0 2 2 2 0 Toxin-coregulated pilus subunit TcpA Cadherin_5 PF17892.1 gi|89256051|ref|YP_513413.1| - 2.7 8.0 7.2 0.32 11.0 0.2 3.0 2 1 1 3 3 3 0 Cadherin-like domain HTH_3 PF01381.22 gi|89256052|ref|YP_513414.1| - 2e-05 24.5 0.0 3.2e-05 23.9 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix Peptidase_S24 PF00717.23 gi|89256052|ref|YP_513414.1| - 0.00013 21.9 0.5 0.00057 19.8 0.5 2.0 1 1 0 1 1 1 1 Peptidase S24-like YdaS_antitoxin PF15943.5 gi|89256052|ref|YP_513414.1| - 0.088 12.7 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_19 PF12844.7 gi|89256052|ref|YP_513414.1| - 0.12 12.4 0.0 0.27 11.3 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain EamA PF00892.20 gi|89256054|ref|YP_513416.1| - 3.5e-33 114.7 48.0 9.3e-21 74.4 23.3 2.1 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.16 gi|89256054|ref|YP_513416.1| - 0.17 11.2 26.2 2.8 7.2 26.2 2.5 1 1 0 1 1 1 0 Triose-phosphate Transporter family TMEM234 PF10639.9 gi|89256054|ref|YP_513416.1| - 0.17 11.9 18.6 0.62 10.1 2.8 3.3 1 1 3 4 4 4 0 Putative transmembrane family 234 CRT-like PF08627.10 gi|89256054|ref|YP_513416.1| - 0.36 9.7 24.9 0.46 9.4 7.1 2.6 1 1 2 3 3 3 0 CRT-like, chloroquine-resistance transporter-like Glu_synthase PF01645.17 gi|89256055|ref|YP_513417.1| - 3.4e-86 289.7 0.4 4.3e-86 289.4 0.4 1.1 1 0 0 1 1 1 1 Conserved region in glutamate synthase FMN_dh PF01070.18 gi|89256055|ref|YP_513417.1| - 0.00062 18.9 0.1 0.0018 17.4 0.1 1.6 2 0 0 2 2 2 1 FMN-dependent dehydrogenase Glu_syn_central PF04898.14 gi|89256055|ref|YP_513417.1| - 0.18 11.3 0.0 0.31 10.5 0.0 1.3 1 0 0 1 1 1 0 Glutamate synthase central domain Halogen_Hydrol PF10112.9 gi|89256055|ref|YP_513417.1| - 0.63 10.0 2.4 1.1 9.2 2.4 1.3 1 0 0 1 1 1 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein Exonuc_V_gamma PF04257.14 gi|89256056|ref|YP_513418.1| - 1.6e-239 797.2 18.3 2.2e-239 796.7 18.3 1.2 1 0 0 1 1 1 1 Exodeoxyribonuclease V, gamma subunit RecC_C PF17946.1 gi|89256056|ref|YP_513418.1| - 4e-21 75.7 0.0 1e-20 74.4 0.0 1.7 1 0 0 1 1 1 1 RecC C-terminal domain FUSC_2 PF13515.6 gi|89256057|ref|YP_513419.1| - 1.3e-12 47.9 15.8 1.9e-12 47.4 15.7 1.3 1 1 0 1 1 1 1 Fusaric acid resistance protein-like ArAE_1 PF06081.11 gi|89256057|ref|YP_513419.1| - 5.4e-05 23.4 13.1 0.00011 22.4 13.1 1.6 1 1 0 1 1 1 1 Aromatic acid exporter family member 1 AlbA_2 PF04326.14 gi|89256058|ref|YP_513420.1| - 2.9e-22 79.3 1.4 2.9e-22 79.3 1.4 2.2 3 0 0 3 3 2 1 Putative DNA-binding domain HATPase_c_4 PF13749.6 gi|89256058|ref|YP_513420.1| - 1.7e-13 50.5 0.0 4.4e-13 49.2 0.0 1.7 1 0 0 1 1 1 1 Putative ATP-dependent DNA helicase recG C-terminal HTH_24 PF13412.6 gi|89256058|ref|YP_513420.1| - 2.1e-11 43.2 0.1 6e-11 41.7 0.1 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|89256058|ref|YP_513420.1| - 2.3e-10 40.3 0.1 5.3e-10 39.1 0.1 1.7 1 0 0 1 1 1 1 HTH domain HTH_AsnC-type PF13404.6 gi|89256058|ref|YP_513420.1| - 2e-06 27.5 0.0 6.5e-06 25.9 0.0 1.9 2 0 0 2 2 1 1 AsnC-type helix-turn-helix domain HTH_Mga PF08280.11 gi|89256058|ref|YP_513420.1| - 4.7e-06 26.5 0.1 1.3e-05 25.1 0.1 1.8 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain MarR_2 PF12802.7 gi|89256058|ref|YP_513420.1| - 8.1e-06 25.6 0.0 1.7e-05 24.6 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|89256058|ref|YP_513420.1| - 1.8e-05 24.7 0.0 3.1e-05 24.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|89256058|ref|YP_513420.1| - 2.3e-05 24.2 0.1 7.7e-05 22.5 0.1 1.9 1 0 0 1 1 1 1 MarR family HTH_DeoR PF08220.12 gi|89256058|ref|YP_513420.1| - 2.5e-05 23.9 0.1 6.2e-05 22.7 0.1 1.7 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain Rrf2 PF02082.20 gi|89256058|ref|YP_513420.1| - 0.00024 21.4 0.0 0.00052 20.3 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator Sigma70_r4_2 PF08281.12 gi|89256058|ref|YP_513420.1| - 0.0003 20.4 0.0 0.00065 19.3 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_5 PF01022.20 gi|89256058|ref|YP_513420.1| - 0.0004 20.2 0.0 0.00085 19.1 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.6 gi|89256058|ref|YP_513420.1| - 0.0027 18.1 0.0 0.0066 16.9 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain Sigma70_r4 PF04545.16 gi|89256058|ref|YP_513420.1| - 0.0028 17.1 0.0 0.013 15.0 0.0 2.0 2 0 0 2 2 2 1 Sigma-70, region 4 TrmB PF01978.19 gi|89256058|ref|YP_513420.1| - 0.026 14.4 0.0 0.059 13.3 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.19 gi|89256058|ref|YP_513420.1| - 0.027 14.7 0.0 0.06 13.6 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_Crp_2 PF13545.6 gi|89256058|ref|YP_513420.1| - 0.03 14.3 0.0 0.098 12.6 0.0 1.8 2 0 0 2 2 1 0 Crp-like helix-turn-helix domain HTH_23 PF13384.6 gi|89256058|ref|YP_513420.1| - 0.031 14.1 0.0 0.06 13.2 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HTH_Tnp_Tc3_2 PF01498.18 gi|89256058|ref|YP_513420.1| - 0.031 14.5 0.1 0.064 13.5 0.1 1.5 1 0 0 1 1 1 0 Transposase HrcA_DNA-bdg PF03444.15 gi|89256058|ref|YP_513420.1| - 0.046 13.4 0.0 0.11 12.2 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding LexA_DNA_bind PF01726.16 gi|89256058|ref|YP_513420.1| - 0.052 13.3 0.1 0.099 12.4 0.1 1.4 1 0 0 1 1 1 0 LexA DNA binding domain RPA_C PF08784.11 gi|89256058|ref|YP_513420.1| - 0.088 13.5 0.0 0.3 11.8 0.0 1.9 1 0 0 1 1 1 0 Replication protein A C terminal HTH_10 PF04967.12 gi|89256058|ref|YP_513420.1| - 0.11 12.4 0.0 0.31 10.9 0.0 1.8 1 0 0 1 1 1 0 HTH DNA binding domain SgrR_N PF12793.7 gi|89256058|ref|YP_513420.1| - 0.12 12.6 0.0 0.31 11.3 0.0 1.6 1 0 0 1 1 1 0 Sugar transport-related sRNA regulator N-term GerE PF00196.19 gi|89256058|ref|YP_513420.1| - 0.18 11.4 0.4 0.47 10.0 0.1 1.9 2 0 0 2 2 1 0 Bacterial regulatory proteins, luxR family HTH_19 PF12844.7 gi|89256058|ref|YP_513420.1| - 0.24 11.5 2.4 1 9.5 0.2 3.1 4 0 0 4 4 4 0 Helix-turn-helix domain UvrD-helicase PF00580.21 gi|89256059|ref|YP_513421.1| - 5.3e-59 200.3 12.3 5.3e-59 200.3 12.3 4.9 3 2 0 3 3 2 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.6 gi|89256059|ref|YP_513421.1| - 1.1e-25 90.8 5.2 1.1e-25 90.8 5.2 4.2 2 2 0 2 2 1 1 UvrD-like helicase C-terminal domain AAA_19 PF13245.6 gi|89256059|ref|YP_513421.1| - 2.1e-17 63.8 5.3 2e-07 31.5 0.0 4.0 3 1 0 3 3 3 2 AAA domain UvrD_C_2 PF13538.6 gi|89256059|ref|YP_513421.1| - 2.1e-09 37.0 0.0 0.0033 17.2 0.0 2.5 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain PDDEXK_1 PF12705.7 gi|89256059|ref|YP_513421.1| - 4.1e-06 26.9 3.0 9.3e-05 22.5 1.6 3.3 2 1 0 2 2 2 1 PD-(D/E)XK nuclease superfamily AAA_12 PF13087.6 gi|89256059|ref|YP_513421.1| - 0.00014 21.6 5.5 0.046 13.3 1.1 3.0 2 0 0 2 2 2 2 AAA domain AAA_30 PF13604.6 gi|89256059|ref|YP_513421.1| - 0.0076 16.0 0.0 0.032 14.0 0.0 2.0 2 0 0 2 2 2 1 AAA domain Helicase_RecD PF05127.14 gi|89256059|ref|YP_513421.1| - 0.022 14.6 0.0 0.078 12.8 0.0 2.0 1 0 0 1 1 1 0 Helicase Cucumo_coat PF00760.18 gi|89256059|ref|YP_513421.1| - 0.024 14.3 1.4 0.034 13.8 0.3 1.8 2 0 0 2 2 2 0 Cucumovirus coat protein Lys PF00062.20 gi|89256059|ref|YP_513421.1| - 0.042 14.1 0.0 0.19 11.9 0.0 2.2 1 0 0 1 1 1 0 C-type lysozyme/alpha-lactalbumin family DUF3585 PF12130.8 gi|89256059|ref|YP_513421.1| - 0.63 10.2 7.0 0.37 10.9 0.2 3.4 3 0 0 3 3 3 0 Bivalent Mical/EHBP Rab binding domain AAA_30 PF13604.6 gi|89256060|ref|YP_513422.1| - 4.1e-31 108.2 0.0 3.1e-30 105.3 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|89256060|ref|YP_513422.1| - 3.1e-30 105.5 1.0 9.1e-30 103.9 0.4 2.0 2 0 0 2 2 2 1 AAA domain Viral_helicase1 PF01443.18 gi|89256060|ref|YP_513422.1| - 1.4e-16 60.9 1.0 4.6e-06 26.5 0.0 3.3 3 0 0 3 3 3 3 Viral (Superfamily 1) RNA helicase AAA_11 PF13086.6 gi|89256060|ref|YP_513422.1| - 2.8e-15 56.8 0.4 2.4e-06 27.6 0.2 2.6 2 0 0 2 2 2 2 AAA domain UvrD_C_2 PF13538.6 gi|89256060|ref|YP_513422.1| - 4.1e-15 55.3 0.0 1.1e-14 54.0 0.0 1.8 2 0 0 2 2 1 1 UvrD-like helicase C-terminal domain Helicase_RecD PF05127.14 gi|89256060|ref|YP_513422.1| - 5.1e-11 42.7 0.1 1.6e-10 41.1 0.1 1.9 1 0 0 1 1 1 1 Helicase AAA_22 PF13401.6 gi|89256060|ref|YP_513422.1| - 1.1e-08 35.5 0.1 3.9e-08 33.7 0.1 2.0 1 0 0 1 1 1 1 AAA domain UvrD-helicase PF00580.21 gi|89256060|ref|YP_513422.1| - 1.3e-08 34.8 11.6 1.2e-07 31.6 1.0 3.4 2 1 1 3 3 3 2 UvrD/REP helicase N-terminal domain DUF2075 PF09848.9 gi|89256060|ref|YP_513422.1| - 2.4e-07 30.3 0.2 8.8e-07 28.5 0.3 1.9 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) UvrD_C PF13361.6 gi|89256060|ref|YP_513422.1| - 3.6e-07 29.9 17.7 4.8e-07 29.5 0.1 3.7 2 2 0 3 3 3 2 UvrD-like helicase C-terminal domain SH3_13 PF18335.1 gi|89256060|ref|YP_513422.1| - 4.1e-06 26.5 0.0 1.4e-05 24.8 0.0 1.9 1 0 0 1 1 1 1 ATP-dependent RecD-like DNA helicase SH3 domain ResIII PF04851.15 gi|89256060|ref|YP_513422.1| - 4.9e-06 26.7 1.1 4.9e-06 26.7 1.1 2.8 1 1 2 3 3 3 1 Type III restriction enzyme, res subunit PhoH PF02562.16 gi|89256060|ref|YP_513422.1| - 0.00014 21.4 1.8 0.12 11.8 0.1 3.2 3 0 0 3 3 3 2 PhoH-like protein NACHT PF05729.12 gi|89256060|ref|YP_513422.1| - 0.00018 21.5 0.1 0.00044 20.2 0.0 1.7 2 0 0 2 2 1 1 NACHT domain DEAD PF00270.29 gi|89256060|ref|YP_513422.1| - 0.0003 20.6 0.8 0.0003 20.6 0.8 1.9 2 0 0 2 2 2 1 DEAD/DEAH box helicase Flavi_DEAD PF07652.14 gi|89256060|ref|YP_513422.1| - 0.0042 17.1 0.1 0.071 13.1 0.0 2.3 2 0 0 2 2 2 1 Flavivirus DEAD domain TIP49 PF06068.13 gi|89256060|ref|YP_513422.1| - 0.0043 16.3 0.4 0.013 14.7 0.1 2.0 2 0 0 2 2 2 1 TIP49 P-loop domain T2SSE PF00437.20 gi|89256060|ref|YP_513422.1| - 0.0056 15.8 0.0 0.012 14.7 0.0 1.5 1 0 0 1 1 1 1 Type II/IV secretion system protein TrwB_AAD_bind PF10412.9 gi|89256060|ref|YP_513422.1| - 0.011 14.7 1.2 0.027 13.4 0.2 2.2 2 1 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain AAA_12 PF13087.6 gi|89256060|ref|YP_513422.1| - 0.014 15.0 0.1 0.014 15.0 0.1 3.1 3 1 0 3 3 3 0 AAA domain Terminase_6 PF03237.15 gi|89256060|ref|YP_513422.1| - 0.014 15.0 0.0 0.033 13.9 0.0 1.6 1 0 0 1 1 1 0 Terminase-like family NTPase_1 PF03266.15 gi|89256060|ref|YP_513422.1| - 0.017 15.1 0.4 0.46 10.4 0.1 2.7 2 0 0 2 2 2 0 NTPase AAA_28 PF13521.6 gi|89256060|ref|YP_513422.1| - 0.018 15.3 0.1 0.044 14.0 0.1 1.7 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|89256060|ref|YP_513422.1| - 0.021 14.5 2.0 0.099 12.3 0.4 2.4 1 1 0 2 2 2 0 SRP54-type protein, GTPase domain IstB_IS21 PF01695.17 gi|89256060|ref|YP_513422.1| - 0.023 14.4 0.2 1.7 8.3 0.0 3.3 3 0 0 3 3 3 0 IstB-like ATP binding protein AAA_24 PF13479.6 gi|89256060|ref|YP_513422.1| - 0.043 13.5 0.5 0.23 11.1 0.5 2.3 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|89256060|ref|YP_513422.1| - 0.051 13.7 0.1 0.13 12.4 0.1 1.7 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|89256060|ref|YP_513422.1| - 0.093 13.1 0.1 0.22 11.9 0.1 1.7 1 1 0 1 1 1 0 AAA ATPase domain RNA_helicase PF00910.22 gi|89256060|ref|YP_513422.1| - 0.11 12.8 0.4 1.3 9.5 0.0 2.9 2 1 0 2 2 2 0 RNA helicase TK PF00265.18 gi|89256060|ref|YP_513422.1| - 0.15 11.9 0.8 0.99 9.2 0.2 2.5 1 1 1 2 2 2 0 Thymidine kinase NIL PF09383.10 gi|89256060|ref|YP_513422.1| - 0.25 11.2 1.9 0.72 9.7 0.4 2.6 3 1 0 3 3 2 0 NIL domain AAA PF00004.29 gi|89256060|ref|YP_513422.1| - 0.35 11.3 4.6 6.2 7.3 4.6 2.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) RPW8 PF05659.11 gi|89256060|ref|YP_513422.1| - 0.85 9.3 7.0 2.5 7.8 0.0 3.9 3 1 1 4 4 4 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 CbiA PF01656.23 gi|89256060|ref|YP_513422.1| - 0.96 9.5 4.1 2.6 8.1 4.1 2.1 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain Pan_kinase PF03309.14 gi|89256061|ref|YP_513423.1| - 1.2e-59 201.6 0.0 1.4e-59 201.4 0.0 1.0 1 0 0 1 1 1 1 Type III pantothenate kinase DUF1786 PF08735.10 gi|89256061|ref|YP_513423.1| - 0.086 12.1 0.0 9.6 5.4 0.0 2.2 2 0 0 2 2 2 0 Putative pyruvate format-lyase activating enzyme (DUF1786) FtsA PF14450.6 gi|89256061|ref|YP_513423.1| - 0.11 12.9 1.2 5.2 7.5 0.2 2.6 2 1 0 2 2 2 0 Cell division protein FtsA Asp_decarbox PF02261.16 gi|89256062|ref|YP_513424.1| - 5.8e-39 132.6 0.4 6.4e-39 132.5 0.4 1.0 1 0 0 1 1 1 1 Aspartate decarboxylase Pantoate_ligase PF02569.15 gi|89256063|ref|YP_513425.1| - 2.6e-83 279.3 0.1 6.1e-83 278.1 0.1 1.5 1 1 0 1 1 1 1 Pantoate-beta-alanine ligase FAD_syn PF06574.12 gi|89256063|ref|YP_513425.1| - 0.011 15.6 0.0 0.033 14.1 0.0 1.7 2 0 0 2 2 2 0 FAD synthetase CTP_transf_like PF01467.26 gi|89256063|ref|YP_513425.1| - 0.017 15.3 0.0 0.033 14.4 0.0 1.6 1 1 0 1 1 1 0 Cytidylyltransferase-like HIGH_NTase1 PF05636.11 gi|89256063|ref|YP_513425.1| - 0.1 11.8 1.1 2.2 7.4 0.0 2.2 2 0 0 2 2 2 0 HIGH Nucleotidyl Transferase Pantoate_transf PF02548.15 gi|89256064|ref|YP_513426.1| - 3.2e-103 344.6 0.8 3.9e-103 344.4 0.8 1.0 1 0 0 1 1 1 1 Ketopantoate hydroxymethyltransferase PEP_mutase PF13714.6 gi|89256064|ref|YP_513426.1| - 7.8e-05 22.2 0.2 0.00028 20.4 0.2 1.7 1 1 1 2 2 2 1 Phosphoenolpyruvate phosphomutase Asp_Glu_race PF01177.22 gi|89256064|ref|YP_513426.1| - 0.00013 21.9 0.1 0.00049 20.0 0.1 1.8 1 1 1 2 2 2 1 Asp/Glu/Hydantoin racemase ACP_syn_III PF08545.10 gi|89256064|ref|YP_513426.1| - 0.062 13.2 0.2 0.37 10.7 0.0 2.2 1 1 1 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Speriolin_C PF15059.6 gi|89256064|ref|YP_513426.1| - 0.1 12.7 0.0 0.63 10.2 0.0 2.2 3 0 0 3 3 3 0 Speriolin C-terminus DUF2520 PF10728.9 gi|89256065|ref|YP_513427.1| - 1.4e-14 54.0 0.0 2.3e-14 53.3 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF2520) DNA_ligase_aden PF01653.18 gi|89256066|ref|YP_513428.1| - 4.9e-108 361.0 0.3 7.4e-108 360.4 0.3 1.2 1 0 0 1 1 1 1 NAD-dependent DNA ligase adenylation domain DNA_ligase_OB PF03120.16 gi|89256066|ref|YP_513428.1| - 7e-34 115.6 2.0 1.5e-33 114.5 2.0 1.6 1 0 0 1 1 1 1 NAD-dependent DNA ligase OB-fold domain HHH_2 PF12826.7 gi|89256066|ref|YP_513428.1| - 1.6e-18 66.6 0.7 8.2e-18 64.3 0.4 2.5 3 0 0 3 3 3 1 Helix-hairpin-helix motif BRCT PF00533.26 gi|89256066|ref|YP_513428.1| - 1.4e-14 54.2 0.1 1.1e-13 51.3 0.1 2.4 2 0 0 2 2 2 1 BRCA1 C Terminus (BRCT) domain DNA_ligase_ZBD PF03119.16 gi|89256066|ref|YP_513428.1| - 1.4e-09 37.8 1.1 3e-09 36.7 1.1 1.6 1 0 0 1 1 1 1 NAD-dependent DNA ligase C4 zinc finger domain HHH_5 PF14520.6 gi|89256066|ref|YP_513428.1| - 2.6e-09 37.5 0.0 0.00057 20.4 0.0 2.7 2 0 0 2 2 2 2 Helix-hairpin-helix domain PTCB-BRCT PF12738.7 gi|89256066|ref|YP_513428.1| - 1.9e-07 30.9 0.5 7.8e-07 28.9 0.1 2.2 2 0 0 2 2 2 1 twin BRCT domain Peptidase_C92 PF05708.12 gi|89256067|ref|YP_513429.1| - 6.1e-13 49.2 0.1 7.5e-13 48.9 0.1 1.1 1 0 0 1 1 1 1 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family NLPC_P60 PF00877.19 gi|89256067|ref|YP_513429.1| - 0.025 14.6 0.1 0.27 11.3 0.1 2.2 2 1 0 2 2 2 0 NlpC/P60 family LRAT PF04970.13 gi|89256067|ref|YP_513429.1| - 0.054 13.8 0.0 2.3 8.5 0.0 2.1 1 1 1 2 2 2 0 Lecithin retinol acyltransferase DDE_3 PF13358.6 gi|89256068|ref|YP_513430.1| - 2.3e-30 105.3 0.1 7.9e-30 103.5 0.0 1.8 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.16 gi|89256068|ref|YP_513430.1| - 0.0029 17.6 1.5 0.0084 16.2 0.6 2.3 2 1 0 2 2 2 1 Transposase HTH_29 PF13551.6 gi|89256068|ref|YP_513430.1| - 0.0033 17.4 0.0 0.008 16.2 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn helix HTH_40 PF14493.6 gi|89256068|ref|YP_513430.1| - 0.0099 16.3 0.1 0.069 13.6 0.0 2.3 3 1 0 3 3 3 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|89256068|ref|YP_513430.1| - 0.026 14.6 0.0 0.073 13.2 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|89256068|ref|YP_513430.1| - 0.12 12.2 0.0 0.34 10.8 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain rve PF00665.26 gi|89256068|ref|YP_513430.1| - 0.15 12.3 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 Integrase core domain DDE_Tnp_ISAZ013 PF07592.11 gi|89256068|ref|YP_513430.1| - 0.17 10.9 0.3 1.1 8.1 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain BPD_transp_1 PF00528.22 gi|89256069|ref|YP_513431.1| - 3e-24 85.8 13.2 3e-24 85.8 13.2 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component UPF0154 PF03672.13 gi|89256069|ref|YP_513431.1| - 2.2 8.4 5.0 2.2 8.3 0.9 2.6 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0154) BPD_transp_1 PF00528.22 gi|89256070|ref|YP_513432.1| - 3.7e-14 52.9 16.2 3.7e-14 52.9 16.2 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|89256071|ref|YP_513433.1| - 1.1e-34 119.9 0.0 3.7e-34 118.2 0.0 1.8 2 0 0 2 2 2 1 ABC transporter TOBE_2 PF08402.10 gi|89256071|ref|YP_513433.1| - 2e-14 53.5 0.0 4.2e-14 52.5 0.0 1.6 1 0 0 1 1 1 1 TOBE domain AAA_21 PF13304.6 gi|89256071|ref|YP_513433.1| - 7.2e-08 32.6 2.1 0.00013 21.8 0.0 2.7 2 1 1 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|89256071|ref|YP_513433.1| - 5.1e-06 26.1 1.6 3e-05 23.5 1.6 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|89256071|ref|YP_513433.1| - 0.0015 18.2 0.0 0.0073 16.0 0.0 2.0 2 0 0 2 2 2 1 P-loop containing region of AAA domain ABC_ATPase PF09818.9 gi|89256071|ref|YP_513433.1| - 0.021 13.6 0.1 1 8.1 0.0 2.5 3 0 0 3 3 3 0 Predicted ATPase of the ABC class RsgA_GTPase PF03193.16 gi|89256071|ref|YP_513433.1| - 0.054 13.4 0.0 0.16 11.9 0.0 1.7 1 0 0 1 1 1 0 RsgA GTPase Rad17 PF03215.15 gi|89256071|ref|YP_513433.1| - 0.056 13.4 0.0 0.093 12.6 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_23 PF13476.6 gi|89256071|ref|YP_513433.1| - 0.077 13.5 1.1 1.1 9.7 0.0 2.7 3 0 0 3 3 3 0 AAA domain AAA_16 PF13191.6 gi|89256071|ref|YP_513433.1| - 0.083 13.3 0.1 0.18 12.2 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_28 PF13521.6 gi|89256071|ref|YP_513433.1| - 0.092 13.0 0.2 0.24 11.7 0.1 1.7 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|89256071|ref|YP_513433.1| - 0.14 12.3 0.1 3.1 7.9 0.0 2.7 3 0 0 3 3 3 0 50S ribosome-binding GTPase SbcCD_C PF13558.6 gi|89256071|ref|YP_513433.1| - 0.16 12.2 0.1 1.5 9.1 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_22 PF13401.6 gi|89256071|ref|YP_513433.1| - 0.18 12.1 1.4 1.1 9.5 1.4 2.1 1 1 0 1 1 1 0 AAA domain DDE_3 PF13358.6 gi|89256072|ref|YP_513434.1| - 2.3e-30 105.3 0.1 7.9e-30 103.5 0.0 1.8 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.16 gi|89256072|ref|YP_513434.1| - 0.0029 17.6 1.5 0.0084 16.2 0.6 2.3 2 1 0 2 2 2 1 Transposase HTH_29 PF13551.6 gi|89256072|ref|YP_513434.1| - 0.0033 17.4 0.0 0.008 16.2 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn helix HTH_40 PF14493.6 gi|89256072|ref|YP_513434.1| - 0.0099 16.3 0.1 0.069 13.6 0.0 2.3 3 1 0 3 3 3 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|89256072|ref|YP_513434.1| - 0.026 14.6 0.0 0.073 13.2 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|89256072|ref|YP_513434.1| - 0.12 12.2 0.0 0.34 10.8 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain rve PF00665.26 gi|89256072|ref|YP_513434.1| - 0.15 12.3 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 Integrase core domain DDE_Tnp_ISAZ013 PF07592.11 gi|89256072|ref|YP_513434.1| - 0.17 10.9 0.3 1.1 8.1 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain NAD_synthase PF02540.17 gi|89256074|ref|YP_513436.1| - 4e-74 248.8 0.0 4.6e-74 248.6 0.0 1.0 1 0 0 1 1 1 1 NAD synthase QueC PF06508.13 gi|89256074|ref|YP_513436.1| - 3.4e-07 30.0 0.3 4e-05 23.2 0.1 2.3 2 1 0 2 2 2 2 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|89256074|ref|YP_513436.1| - 1.1e-05 24.5 0.0 2.5e-05 23.3 0.0 1.6 2 0 0 2 2 2 1 tRNA methyl transferase ThiI PF02568.14 gi|89256074|ref|YP_513436.1| - 0.00012 21.8 0.0 0.00023 20.8 0.0 1.5 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) Asn_synthase PF00733.21 gi|89256074|ref|YP_513436.1| - 0.00031 20.5 0.0 0.00032 20.5 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase PAPS_reduct PF01507.19 gi|89256074|ref|YP_513436.1| - 0.021 14.9 0.0 0.53 10.3 0.0 2.2 1 1 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family Sigma70_r1_1 PF03979.14 gi|89256074|ref|YP_513436.1| - 0.7 10.0 2.6 0.84 9.7 0.1 2.0 2 0 0 2 2 2 0 Sigma-70 factor, region 1.1 OEP PF02321.18 gi|89256075|ref|YP_513437.1| - 1.7e-39 135.6 22.2 2.1e-23 83.1 3.3 2.1 2 0 0 2 2 2 2 Outer membrane efflux protein GOLGA2L5 PF15070.6 gi|89256075|ref|YP_513437.1| - 0.00016 20.5 0.7 0.00016 20.5 0.7 2.0 2 0 0 2 2 2 1 Putative golgin subfamily A member 2-like protein 5 HlyD_D23 PF16576.5 gi|89256076|ref|YP_513438.1| - 6.3e-22 77.8 1.5 4.3e-20 71.9 1.5 2.2 1 1 0 1 1 1 1 Barrel-sandwich domain of CusB or HlyD membrane-fusion HlyD_3 PF13437.6 gi|89256076|ref|YP_513438.1| - 5.2e-17 62.5 0.6 2.7e-13 50.5 0.0 2.7 2 0 0 2 2 2 2 HlyD family secretion protein Biotin_lipoyl_2 PF13533.6 gi|89256076|ref|YP_513438.1| - 7.8e-15 54.4 4.2 1.3e-12 47.4 0.7 3.4 3 1 0 3 3 3 2 Biotin-lipoyl like HlyD PF00529.20 gi|89256076|ref|YP_513438.1| - 4.4e-09 36.1 0.0 6.3e-09 35.6 0.0 1.5 1 1 0 1 1 1 1 HlyD membrane-fusion protein of T1SS HlyD_2 PF12700.7 gi|89256076|ref|YP_513438.1| - 0.00013 20.8 8.9 0.00033 19.5 8.9 1.6 1 1 0 1 1 1 1 HlyD family secretion protein Biotin_lipoyl PF00364.22 gi|89256076|ref|YP_513438.1| - 0.0012 18.7 0.2 2.1 8.3 0.0 3.3 4 0 0 4 4 4 2 Biotin-requiring enzyme DUF2316 PF10078.9 gi|89256076|ref|YP_513438.1| - 0.014 15.6 0.8 0.029 14.6 0.8 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2316) OEP PF02321.18 gi|89256076|ref|YP_513438.1| - 0.061 13.1 19.1 0.17 11.6 14.5 2.3 1 1 1 2 2 2 0 Outer membrane efflux protein SH3BP5 PF05276.14 gi|89256076|ref|YP_513438.1| - 0.2 11.5 7.8 0.3 10.9 7.8 1.2 1 0 0 1 1 1 0 SH3 domain-binding protein 5 (SH3BP5) DUF2564 PF10819.8 gi|89256076|ref|YP_513438.1| - 0.87 10.0 7.1 4.8 7.7 0.0 2.8 1 1 2 3 3 3 0 Protein of unknown function (DUF2564) FliJ PF02050.16 gi|89256076|ref|YP_513438.1| - 1.6 9.0 12.9 0.26 11.5 1.2 2.2 1 1 1 2 2 2 0 Flagellar FliJ protein MFS_1 PF07690.16 gi|89256077|ref|YP_513439.1| - 3.4e-52 177.5 51.2 7.4e-51 173.1 46.0 2.4 2 1 0 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.13 gi|89256077|ref|YP_513439.1| - 0.00025 19.6 23.4 0.012 14.0 2.7 2.2 2 0 0 2 2 2 2 Transmembrane secretion effector OATP PF03137.20 gi|89256077|ref|YP_513439.1| - 0.0037 15.6 29.7 0.0067 14.8 2.2 3.4 2 1 1 3 3 3 2 Organic Anion Transporter Polypeptide (OATP) family HTH_18 PF12833.7 gi|89256078|ref|YP_513440.1| - 7.3e-21 74.2 0.4 1.1e-20 73.7 0.4 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 gi|89256078|ref|YP_513440.1| - 6e-17 61.3 0.2 1.2e-08 34.8 0.0 2.3 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family AraC_binding PF02311.19 gi|89256078|ref|YP_513440.1| - 0.0023 17.8 0.1 0.0057 16.6 0.0 1.6 2 0 0 2 2 2 1 AraC-like ligand binding domain MannoseP_isomer PF01050.18 gi|89256078|ref|YP_513440.1| - 0.11 12.4 0.2 0.36 10.7 0.2 1.7 2 0 0 2 2 2 0 Mannose-6-phosphate isomerase UPF0253 PF06786.12 gi|89256078|ref|YP_513440.1| - 0.13 12.6 0.0 0.3 11.4 0.0 1.6 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0253) AMP-binding PF00501.28 gi|89256079|ref|YP_513441.1| - 1.9e-98 329.9 0.0 2.3e-98 329.6 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|89256079|ref|YP_513441.1| - 1.1e-16 61.6 0.0 2.2e-16 60.6 0.0 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain GH3 PF03321.13 gi|89256079|ref|YP_513441.1| - 0.012 14.5 0.0 0.02 13.8 0.0 1.2 1 0 0 1 1 1 0 GH3 auxin-responsive promoter PTR2 PF00854.21 gi|89256080|ref|YP_513442.1| - 1.7e-47 162.2 23.0 1.7e-47 162.2 23.0 1.9 2 0 0 2 2 2 1 POT family MFS_1 PF07690.16 gi|89256080|ref|YP_513442.1| - 3.9e-17 62.2 53.0 2.1e-14 53.2 31.1 2.5 1 1 1 2 2 2 1 Major Facilitator Superfamily MFS_2 PF13347.6 gi|89256080|ref|YP_513442.1| - 0.0044 15.6 4.6 0.0044 15.6 4.6 4.3 2 2 2 4 4 4 3 MFS/sugar transport protein DUF5336 PF17270.2 gi|89256080|ref|YP_513442.1| - 0.13 11.9 7.8 0.026 14.1 3.5 2.0 2 0 0 2 2 2 0 Family of unknown function (DUF5336) Methyltrans_RNA PF04452.14 gi|89256081|ref|YP_513443.1| - 1.3e-59 201.3 0.0 1.4e-59 201.1 0.0 1.0 1 0 0 1 1 1 1 RNA methyltransferase LktC PF06261.11 gi|89256081|ref|YP_513443.1| - 0.02 14.8 0.0 0.061 13.3 0.0 1.8 1 0 0 1 1 1 0 Actinobacillus actinomycetemcomitans leukotoxin activator LktC PARP_reg PF02877.14 gi|89256081|ref|YP_513443.1| - 0.027 14.6 1.0 0.027 14.6 1.0 1.8 2 0 0 2 2 2 0 Poly(ADP-ribose) polymerase, regulatory domain NdhN PF11909.8 gi|89256081|ref|YP_513443.1| - 0.07 12.8 0.0 1.7 8.3 0.0 2.2 2 0 0 2 2 2 0 NADH-quinone oxidoreductase cyanobacterial subunit N DUF445 PF04286.12 gi|89256082|ref|YP_513444.1| - 8.2e-21 75.2 2.9 3e-11 43.8 0.1 2.1 1 1 0 2 2 2 2 Protein of unknown function (DUF445) DUF4368 PF14287.6 gi|89256082|ref|YP_513444.1| - 0.14 12.4 2.4 0.18 12.1 0.4 2.1 2 1 0 2 2 2 0 Domain of unknown function (DUF4368) MlaD PF02470.20 gi|89256084|ref|YP_513446.1| - 2.3e-14 53.5 0.6 4.2e-14 52.6 0.6 1.5 1 0 0 1 1 1 1 MlaD protein Snapin_Pallidin PF14712.6 gi|89256084|ref|YP_513446.1| - 0.0059 17.0 1.1 0.092 13.2 0.1 2.3 2 0 0 2 2 2 1 Snapin/Pallidin ASD2 PF08687.11 gi|89256084|ref|YP_513446.1| - 0.063 12.8 0.1 0.08 12.5 0.1 1.1 1 0 0 1 1 1 0 Apx/Shroom domain ASD2 DASH_Duo1 PF08651.10 gi|89256084|ref|YP_513446.1| - 0.088 12.6 6.2 3.3 7.6 0.6 3.2 3 1 0 3 3 3 0 DASH complex subunit Duo1 HAUS2 PF15003.6 gi|89256084|ref|YP_513446.1| - 0.089 12.5 0.6 0.12 12.0 0.6 1.3 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 2 SlyX PF04102.12 gi|89256084|ref|YP_513446.1| - 0.16 12.6 0.0 0.52 11.0 0.0 1.8 2 0 0 2 2 2 0 SlyX DUF948 PF06103.11 gi|89256084|ref|YP_513446.1| - 2 8.7 5.0 21 5.5 0.1 3.2 2 1 1 3 3 3 0 Bacterial protein of unknown function (DUF948) ABC_tran PF00005.27 gi|89256085|ref|YP_513447.1| - 7.3e-25 88.1 0.0 1.2e-24 87.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|89256085|ref|YP_513447.1| - 2.7e-08 34.0 0.1 0.00073 19.4 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|89256085|ref|YP_513447.1| - 5e-05 23.2 0.0 0.00086 19.1 0.3 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|89256085|ref|YP_513447.1| - 8e-05 22.9 0.0 0.0021 18.4 0.0 2.2 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.19 gi|89256085|ref|YP_513447.1| - 0.0005 19.6 0.0 0.0035 16.8 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA PF00004.29 gi|89256085|ref|YP_513447.1| - 0.0012 19.2 0.3 0.036 14.5 0.2 2.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|89256085|ref|YP_513447.1| - 0.0038 17.2 0.1 0.0077 16.2 0.1 1.5 1 0 0 1 1 1 1 NACHT domain AAA_23 PF13476.6 gi|89256085|ref|YP_513447.1| - 0.0044 17.6 0.0 0.0096 16.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|89256085|ref|YP_513447.1| - 0.012 15.8 0.1 0.035 14.3 0.1 1.7 2 0 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 gi|89256085|ref|YP_513447.1| - 0.012 15.5 0.6 0.036 14.0 0.1 2.0 2 1 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|89256085|ref|YP_513447.1| - 0.023 14.8 0.2 0.098 12.7 0.0 2.1 2 1 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|89256085|ref|YP_513447.1| - 0.024 15.0 0.0 0.041 14.3 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain RsgA_GTPase PF03193.16 gi|89256085|ref|YP_513447.1| - 0.027 14.4 0.0 0.043 13.7 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_24 PF13479.6 gi|89256085|ref|YP_513447.1| - 0.037 13.8 0.1 0.11 12.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 gi|89256085|ref|YP_513447.1| - 0.042 13.2 0.0 1.1 8.6 0.0 2.2 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_29 PF13555.6 gi|89256085|ref|YP_513447.1| - 0.046 13.5 0.0 0.097 12.4 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain NB-ARC PF00931.22 gi|89256085|ref|YP_513447.1| - 0.048 12.8 0.0 0.094 11.9 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain AAA_33 PF13671.6 gi|89256085|ref|YP_513447.1| - 0.049 13.8 0.0 0.07 13.3 0.0 1.5 1 1 0 1 1 1 0 AAA domain PduV-EutP PF10662.9 gi|89256085|ref|YP_513447.1| - 0.076 12.8 0.1 0.17 11.6 0.1 1.6 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_5 PF07728.14 gi|89256085|ref|YP_513447.1| - 0.092 12.7 0.1 0.3 11.1 0.1 1.9 2 0 0 2 2 1 0 AAA domain (dynein-related subfamily) Viral_helicase1 PF01443.18 gi|89256085|ref|YP_513447.1| - 0.094 12.4 0.0 0.15 11.8 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_18 PF13238.6 gi|89256085|ref|YP_513447.1| - 0.1 13.1 0.0 0.2 12.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.25 gi|89256085|ref|YP_513447.1| - 0.1 12.2 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain DUF815 PF05673.13 gi|89256085|ref|YP_513447.1| - 0.12 11.5 1.5 1 8.4 0.4 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF815) MobB PF03205.14 gi|89256085|ref|YP_513447.1| - 0.13 12.2 0.0 0.29 11.0 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B RNA_helicase PF00910.22 gi|89256085|ref|YP_513447.1| - 0.15 12.5 0.6 0.34 11.3 0.1 1.9 2 1 0 2 2 1 0 RNA helicase AAA_30 PF13604.6 gi|89256085|ref|YP_513447.1| - 0.24 11.1 0.0 0.43 10.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain MlaE PF02405.16 gi|89256086|ref|YP_513448.1| - 4.2e-65 219.4 16.8 5.9e-65 218.9 16.8 1.2 1 0 0 1 1 1 1 Permease MlaE STAS PF01740.21 gi|89256086|ref|YP_513448.1| - 0.019 14.6 0.2 0.058 13.0 0.2 1.8 1 1 0 1 1 1 0 STAS domain Glucosaminidase PF01832.20 gi|89256087|ref|YP_513449.1| - 5.3e-16 58.9 0.3 4e-15 56.1 0.1 2.0 2 0 0 2 2 2 1 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase DUF1911 PF08929.10 gi|89256087|ref|YP_513449.1| - 0.069 14.0 1.1 0.22 12.4 1.1 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF1911) PseudoU_synth_2 PF00849.22 gi|89256088|ref|YP_513450.1| - 3.6e-35 121.4 0.1 6e-35 120.7 0.1 1.4 1 0 0 1 1 1 1 RNA pseudouridylate synthase S4 PF01479.25 gi|89256088|ref|YP_513450.1| - 3.7e-06 26.6 0.0 6.8e-06 25.7 0.0 1.5 1 0 0 1 1 1 1 S4 domain YfiO PF13525.6 gi|89256089|ref|YP_513451.1| - 2.9e-46 157.8 9.3 2.9e-46 157.8 9.3 1.3 1 1 0 1 1 1 1 Outer membrane lipoprotein TPR_18 PF13512.6 gi|89256089|ref|YP_513451.1| - 5.8e-29 101.1 12.7 7.8e-27 94.2 6.3 2.1 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_6 PF13174.6 gi|89256089|ref|YP_513451.1| - 1.2e-10 41.3 8.9 0.029 15.0 0.1 4.9 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_16 PF13432.6 gi|89256089|ref|YP_513451.1| - 8.6e-07 29.5 0.1 0.065 13.9 0.0 2.8 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_19 PF14559.6 gi|89256089|ref|YP_513451.1| - 2.7e-06 27.8 0.2 0.0012 19.3 0.0 3.1 3 0 0 3 3 3 1 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|89256089|ref|YP_513451.1| - 0.0018 18.5 1.1 0.026 14.7 0.1 2.9 2 1 0 2 2 2 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_14 PF13428.6 gi|89256089|ref|YP_513451.1| - 0.0021 18.7 0.1 8.7 7.5 0.0 3.9 3 1 1 4 4 4 1 Tetratricopeptide repeat TPR_11 PF13414.6 gi|89256089|ref|YP_513451.1| - 0.0096 15.6 8.1 0.84 9.4 0.0 4.5 5 0 0 5 5 5 1 TPR repeat TPR_1 PF00515.28 gi|89256089|ref|YP_513451.1| - 0.01 15.7 14.2 0.091 12.6 0.2 4.5 5 0 0 5 5 4 0 Tetratricopeptide repeat TPR_12 PF13424.6 gi|89256089|ref|YP_513451.1| - 0.016 15.4 1.3 0.2 12.0 0.2 2.9 3 1 0 3 3 3 0 Tetratricopeptide repeat TPR_8 PF13181.6 gi|89256089|ref|YP_513451.1| - 0.03 14.5 7.9 17 5.9 0.0 4.6 5 0 0 5 5 5 0 Tetratricopeptide repeat TPR_2 PF07719.17 gi|89256089|ref|YP_513451.1| - 0.043 13.9 16.7 0.28 11.4 0.1 4.9 6 0 0 6 6 6 0 Tetratricopeptide repeat Wzy_C_2 PF11846.8 gi|89256089|ref|YP_513451.1| - 0.044 13.7 2.5 0.076 12.9 0.1 2.3 2 1 0 2 2 2 0 Virulence factor membrane-bound polymerase, C-terminal LPAM_1 PF08139.12 gi|89256089|ref|YP_513451.1| - 2.9 8.6 5.1 9.1 7.0 5.1 1.9 1 1 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site FAD_binding_4 PF01565.23 gi|89256090|ref|YP_513452.1| - 2.2e-22 79.3 0.9 3.4e-22 78.7 0.9 1.3 1 0 0 1 1 1 1 FAD binding domain BBE PF08031.12 gi|89256090|ref|YP_513452.1| - 1.5e-10 41.0 3.2 2.1e-10 40.5 0.8 2.4 2 0 0 2 2 2 1 Berberine and berberine like SHMT PF00464.19 gi|89256092|ref|YP_513454.1| - 5.2e-174 578.5 0.4 6.1e-174 578.3 0.4 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Beta_elim_lyase PF01212.21 gi|89256092|ref|YP_513454.1| - 0.00056 19.3 0.1 0.00099 18.5 0.1 1.4 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|89256092|ref|YP_513454.1| - 0.00093 18.2 0.0 0.0041 16.1 0.0 1.8 2 0 0 2 2 2 1 Aminotransferase class-V DUF615 PF04751.14 gi|89256093|ref|YP_513455.1| - 1.1e-37 129.4 5.6 1.3e-37 129.1 5.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF615) DUF433 PF04255.14 gi|89256093|ref|YP_513455.1| - 0.0047 16.7 0.0 1.3 8.9 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF433) DUF3983 PF13137.6 gi|89256093|ref|YP_513455.1| - 0.048 13.5 0.1 0.099 12.5 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3983) EutC PF05985.11 gi|89256093|ref|YP_513455.1| - 0.05 12.9 0.1 0.068 12.5 0.1 1.2 1 0 0 1 1 1 0 Ethanolamine ammonia-lyase light chain (EutC) DUF3860 PF12976.7 gi|89256093|ref|YP_513455.1| - 0.099 12.7 0.3 0.29 11.2 0.3 1.8 1 0 0 1 1 1 0 Domain of Unknown Function with PDB structure (DUF3860) CemA PF03040.14 gi|89256093|ref|YP_513455.1| - 0.78 9.6 4.6 0.52 10.2 2.7 1.6 1 1 1 2 2 2 0 CemA family DUF4976 PF16347.5 gi|89256094|ref|YP_513456.1| - 0.36 11.1 6.7 0.18 12.1 0.7 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4976) Wzy_C PF04932.15 gi|89256095|ref|YP_513457.1| - 2.3e-09 37.1 0.4 2.3e-09 37.1 0.4 4.7 1 1 2 3 3 3 1 O-Antigen ligase CstA_5TM PF13722.6 gi|89256095|ref|YP_513457.1| - 9.8 6.6 10.8 0.21 11.9 0.4 3.3 3 2 0 3 3 3 0 5TM C-terminal transporter carbon starvation CstA Glyco_transf_8 PF01501.20 gi|89256096|ref|YP_513458.1| - 4.2e-39 134.6 6.6 5.7e-39 134.2 6.6 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 8 Glyco_transf_24 PF18404.1 gi|89256096|ref|YP_513458.1| - 0.00016 21.2 0.4 0.00023 20.7 0.4 1.3 1 0 0 1 1 1 1 Glucosyltransferase 24 Nucleotid_trans PF03407.16 gi|89256096|ref|YP_513458.1| - 0.0041 17.1 0.5 0.0072 16.3 0.5 1.3 1 0 0 1 1 1 1 Nucleotide-diphospho-sugar transferase Glyco_trans_1_4 PF13692.6 gi|89256097|ref|YP_513459.1| - 0.0051 17.2 0.0 0.01 16.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|89256097|ref|YP_513459.1| - 0.0055 16.3 0.5 0.024 14.2 0.1 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|89256098|ref|YP_513460.1| - 3.5e-40 137.3 0.0 5e-40 136.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|89256098|ref|YP_513460.1| - 6.5e-28 97.8 0.0 1.4e-27 96.7 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|89256098|ref|YP_513460.1| - 4.8e-09 36.5 0.0 1e-08 35.5 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|89256098|ref|YP_513460.1| - 0.00045 20.3 0.1 0.0041 17.2 0.0 2.4 2 1 0 2 2 2 1 Glycosyltransferase Family 4 CBAH PF02275.18 gi|89256099|ref|YP_513461.1| - 2e-50 172.2 8.3 2.8e-50 171.8 8.3 1.1 1 0 0 1 1 1 1 Linear amide C-N hydrolases, choloylglycine hydrolase family PTR2 PF00854.21 gi|89256100|ref|YP_513462.1| - 2.8e-35 121.9 13.1 3.6e-35 121.6 13.1 1.2 1 0 0 1 1 1 1 POT family MFS_1 PF07690.16 gi|89256100|ref|YP_513462.1| - 2.9e-06 26.5 24.4 2.2e-05 23.5 24.4 2.0 1 1 0 1 1 1 1 Major Facilitator Superfamily DUF2070 PF09843.9 gi|89256100|ref|YP_513462.1| - 0.98 7.6 11.0 1.2 7.4 11.0 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) PTR2 PF00854.21 gi|89256101|ref|YP_513463.1| - 1.1e-07 31.0 1.4 1.1e-07 31.0 1.4 1.3 2 0 0 2 2 2 1 POT family MFS_1 PF07690.16 gi|89256101|ref|YP_513463.1| - 1.5e-05 24.1 6.0 1.5e-05 24.1 6.0 1.8 2 0 0 2 2 2 1 Major Facilitator Superfamily Otopetrin PF03189.13 gi|89256101|ref|YP_513463.1| - 0.64 8.8 7.3 0.84 8.4 7.3 1.1 1 0 0 1 1 1 0 Otopetrin ATP_bind_3 PF01171.20 gi|89256102|ref|YP_513464.1| - 2e-49 167.8 0.2 5e-49 166.5 0.0 1.7 2 0 0 2 2 2 1 PP-loop family TilS PF09179.11 gi|89256102|ref|YP_513464.1| - 1.7e-10 41.3 0.0 3.7e-10 40.1 0.0 1.6 1 0 0 1 1 1 1 TilS substrate binding domain TilS_C PF11734.8 gi|89256102|ref|YP_513464.1| - 2.1e-09 36.7 0.1 4.4e-09 35.7 0.1 1.6 1 0 0 1 1 1 1 TilS substrate C-terminal domain tRNA_Me_trans PF03054.16 gi|89256102|ref|YP_513464.1| - 0.0016 17.3 0.2 0.024 13.5 0.0 2.2 2 0 0 2 2 2 1 tRNA methyl transferase PAPS_reduct PF01507.19 gi|89256102|ref|YP_513464.1| - 0.0078 16.3 0.0 0.041 13.9 0.0 2.2 2 1 0 2 2 2 1 Phosphoadenosine phosphosulfate reductase family NAD_synthase PF02540.17 gi|89256102|ref|YP_513464.1| - 0.026 13.6 0.0 0.053 12.6 0.0 1.6 1 0 0 1 1 1 0 NAD synthase 2-Hacid_dh_C PF02826.19 gi|89256103|ref|YP_513465.1| - 4.1e-48 163.1 0.0 8.1e-48 162.1 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|89256103|ref|YP_513465.1| - 1.3e-31 109.1 0.6 2.3e-31 108.2 0.1 1.6 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 gi|89256103|ref|YP_513465.1| - 7.6e-05 22.9 0.5 0.00063 20.0 0.1 2.4 3 0 0 3 3 3 1 NAD binding domain of 6-phosphogluconate dehydrogenase ACT PF01842.25 gi|89256103|ref|YP_513465.1| - 0.00044 20.0 0.1 0.00096 18.9 0.1 1.6 1 0 0 1 1 1 1 ACT domain AdoHcyase_NAD PF00670.21 gi|89256103|ref|YP_513465.1| - 0.009 16.1 0.1 0.02 15.0 0.1 1.5 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|89256103|ref|YP_513465.1| - 0.028 14.0 0.2 0.1 12.2 0.1 1.9 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain IlvN PF07991.12 gi|89256103|ref|YP_513465.1| - 0.051 13.1 0.1 0.1 12.2 0.1 1.5 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain Thymidylat_synt PF00303.19 gi|89256104|ref|YP_513466.1| - 6.3e-116 386.2 0.0 7.2e-116 386.0 0.0 1.0 1 0 0 1 1 1 1 Thymidylate synthase WD40 PF00400.32 gi|89256104|ref|YP_513466.1| - 0.11 13.4 0.3 0.74 10.8 0.1 2.3 2 0 0 2 2 2 0 WD domain, G-beta repeat LGT PF01790.18 gi|89256105|ref|YP_513467.1| - 1.8e-76 256.6 11.9 2.1e-76 256.4 11.9 1.0 1 0 0 1 1 1 1 Prolipoprotein diacylglyceryl transferase Peptidase_A8 PF01252.18 gi|89256105|ref|YP_513467.1| - 8.1 6.7 11.6 4.4 7.5 0.7 3.6 1 1 3 4 4 4 0 Signal peptidase (SPase) II RNase_E_G PF10150.9 gi|89256106|ref|YP_513468.1| - 1.3e-89 300.3 1.8 1.3e-89 300.3 1.8 3.3 2 1 2 4 4 4 1 Ribonuclease E/G family S1 PF00575.23 gi|89256106|ref|YP_513468.1| - 2.1e-08 34.4 0.0 1.5e-07 31.6 0.0 2.6 2 0 0 2 2 2 1 S1 RNA binding domain Anti-TRAP PF15777.5 gi|89256106|ref|YP_513468.1| - 0.04 13.9 0.0 0.097 12.6 0.0 1.6 1 0 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein KH_1 PF00013.29 gi|89256106|ref|YP_513468.1| - 0.061 13.1 0.1 0.2 11.5 0.1 1.9 1 0 0 1 1 1 0 KH domain Flu_C_NS1 PF03506.13 gi|89256106|ref|YP_513468.1| - 0.13 12.2 0.1 0.25 11.3 0.1 1.4 1 0 0 1 1 1 0 Influenza C non-structural protein (NS1) DUF2155 PF09923.9 gi|89256106|ref|YP_513468.1| - 0.23 11.7 1.7 22 5.4 0.0 3.5 3 1 1 4 4 4 0 Uncharacterized protein conserved in bacteria (DUF2155) Aminotran_5 PF00266.19 gi|89256107|ref|YP_513469.1| - 4.9e-67 226.5 2.3 7.4e-67 225.9 2.3 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|89256107|ref|YP_513469.1| - 5.9e-07 29.1 0.7 1e-06 28.3 0.3 1.6 2 0 0 2 2 2 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|89256107|ref|YP_513469.1| - 4.4e-06 26.2 0.2 6.7e-06 25.6 0.2 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|89256107|ref|YP_513469.1| - 0.00024 19.8 0.5 0.00056 18.6 0.3 1.6 1 1 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Pyridoxal_deC PF00282.19 gi|89256107|ref|YP_513469.1| - 0.0012 17.6 0.0 0.0022 16.8 0.0 1.4 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain B12-binding PF02310.19 gi|89256107|ref|YP_513469.1| - 0.039 14.0 0.0 0.18 11.9 0.0 2.1 1 1 1 2 2 2 0 B12 binding domain Methyltransf_34 PF11312.8 gi|89256107|ref|YP_513469.1| - 0.1 11.9 0.0 0.18 11.0 0.0 1.3 1 0 0 1 1 1 0 Putative SAM-dependent methyltransferase RecO_N PF11967.8 gi|89256109|ref|YP_513471.1| - 3.3e-15 55.8 0.1 7.1e-15 54.7 0.1 1.6 1 0 0 1 1 1 1 Recombination protein O N terminal RecO_C PF02565.15 gi|89256109|ref|YP_513471.1| - 9.8e-15 54.7 0.0 1.5e-14 54.1 0.0 1.3 1 0 0 1 1 1 1 Recombination protein O C terminal SNARE_assoc PF09335.11 gi|89256110|ref|YP_513472.1| - 5.3e-22 78.6 7.0 5.3e-22 78.6 7.0 1.8 2 0 0 2 2 2 1 SNARE associated Golgi protein SNARE_assoc PF09335.11 gi|89256111|ref|YP_513473.1| - 6.7e-20 71.8 7.4 6.7e-20 71.8 7.4 1.7 3 0 0 3 3 3 1 SNARE associated Golgi protein Pam17 PF08566.10 gi|89256111|ref|YP_513473.1| - 0.012 15.5 0.1 0.025 14.4 0.1 1.6 1 0 0 1 1 1 0 Mitochondrial import protein Pam17 BolA PF01722.18 gi|89256112|ref|YP_513474.1| - 4.6e-13 49.2 0.6 5.4e-13 49.0 0.6 1.1 1 0 0 1 1 1 1 BolA-like protein 5-FTHF_cyc-lig PF01812.20 gi|89256113|ref|YP_513475.1| - 5e-24 85.2 0.0 5.7e-24 85.0 0.0 1.0 1 0 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family UPF0149 PF03695.13 gi|89256114|ref|YP_513476.1| - 6.1e-29 101.5 0.2 7.7e-29 101.2 0.2 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0149) FAD_binding_3 PF01494.19 gi|89256115|ref|YP_513477.1| - 5.4e-32 111.4 0.0 7e-32 111.0 0.0 1.1 1 0 0 1 1 1 1 FAD binding domain SE PF08491.10 gi|89256115|ref|YP_513477.1| - 1.1e-10 41.0 0.5 1.1e-07 31.1 0.1 2.6 3 0 0 3 3 3 2 Squalene epoxidase DAO PF01266.24 gi|89256115|ref|YP_513477.1| - 1.9e-07 31.0 0.3 3.6e-05 23.5 0.2 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase Trp_halogenase PF04820.14 gi|89256115|ref|YP_513477.1| - 6.8e-07 28.5 0.2 0.029 13.2 0.0 2.7 2 1 0 2 2 2 2 Tryptophan halogenase FAD_binding_2 PF00890.24 gi|89256115|ref|YP_513477.1| - 2.4e-05 23.6 0.8 0.018 14.2 0.5 2.2 1 1 1 2 2 2 2 FAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|89256115|ref|YP_513477.1| - 0.00034 20.2 0.2 0.00073 19.2 0.2 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox_2 PF07992.14 gi|89256115|ref|YP_513477.1| - 0.0012 18.1 1.2 0.0057 15.9 1.2 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|89256115|ref|YP_513477.1| - 0.0076 15.0 0.8 0.056 12.1 0.1 2.1 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_8 PF13450.6 gi|89256115|ref|YP_513477.1| - 0.011 16.0 0.2 0.026 14.8 0.2 1.6 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain ApbA PF02558.16 gi|89256115|ref|YP_513477.1| - 0.025 14.2 0.7 0.043 13.4 0.1 1.7 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA Thi4 PF01946.17 gi|89256115|ref|YP_513477.1| - 0.051 12.8 0.5 0.19 10.9 0.1 2.0 2 0 0 2 2 2 0 Thi4 family 3HCDH_N PF02737.18 gi|89256115|ref|YP_513477.1| - 0.056 13.3 0.1 0.13 12.1 0.1 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ThiF PF00899.21 gi|89256115|ref|YP_513477.1| - 0.081 12.3 0.0 0.14 11.5 0.0 1.3 1 0 0 1 1 1 0 ThiF family FAD_oxidored PF12831.7 gi|89256115|ref|YP_513477.1| - 0.13 11.6 2.0 1.3 8.3 2.0 2.1 1 1 0 1 1 1 0 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|89256115|ref|YP_513477.1| - 0.14 12.7 0.1 0.38 11.3 0.1 1.7 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|89256115|ref|YP_513477.1| - 0.46 9.5 4.0 1.3 8.0 4.0 1.7 1 1 0 1 1 1 0 Glucose inhibited division protein A FAD_binding_3 PF01494.19 gi|89256116|ref|YP_513478.1| - 1.5e-34 119.8 0.0 1.9e-34 119.5 0.0 1.1 1 0 0 1 1 1 1 FAD binding domain SE PF08491.10 gi|89256116|ref|YP_513478.1| - 1.6e-11 43.8 0.1 3.2e-11 42.8 0.1 1.5 1 0 0 1 1 1 1 Squalene epoxidase DAO PF01266.24 gi|89256116|ref|YP_513478.1| - 7e-09 35.7 0.0 3.6e-06 26.8 0.1 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|89256116|ref|YP_513478.1| - 1.5e-07 31.8 1.1 0.00064 20.2 0.2 2.7 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|89256116|ref|YP_513478.1| - 6.5e-07 28.4 0.1 1.1e-06 27.6 0.1 1.3 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox_2 PF07992.14 gi|89256116|ref|YP_513478.1| - 8.9e-07 28.4 0.2 4.3e-05 22.9 0.1 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|89256116|ref|YP_513478.1| - 5.2e-06 25.6 0.1 0.055 12.3 0.0 2.1 2 0 0 2 2 2 2 Tryptophan halogenase FAD_binding_2 PF00890.24 gi|89256116|ref|YP_513478.1| - 7.4e-06 25.3 3.3 9.8e-05 21.6 2.5 2.7 1 1 2 3 3 3 1 FAD binding domain NAD_binding_8 PF13450.6 gi|89256116|ref|YP_513478.1| - 0.00013 22.1 0.5 0.00041 20.5 0.3 1.9 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.12 gi|89256116|ref|YP_513478.1| - 0.00015 20.9 0.5 0.0056 15.8 0.3 2.2 2 0 0 2 2 2 1 Lycopene cyclase protein TrkA_N PF02254.18 gi|89256116|ref|YP_513478.1| - 0.00022 21.4 0.1 0.0013 18.9 0.0 2.3 3 0 0 3 3 2 1 TrkA-N domain Thi4 PF01946.17 gi|89256116|ref|YP_513478.1| - 0.0019 17.5 0.0 0.0041 16.4 0.0 1.6 1 0 0 1 1 1 1 Thi4 family Pyr_redox_3 PF13738.6 gi|89256116|ref|YP_513478.1| - 0.0061 15.9 1.3 0.022 14.0 0.2 2.4 1 1 2 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|89256116|ref|YP_513478.1| - 0.0087 16.0 1.5 0.058 13.3 1.5 2.2 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_oxidored PF12831.7 gi|89256116|ref|YP_513478.1| - 0.011 15.2 0.8 0.024 14.0 0.8 1.6 1 1 0 1 1 1 0 FAD dependent oxidoreductase NAD_binding_7 PF13241.6 gi|89256116|ref|YP_513478.1| - 0.015 15.7 0.0 0.034 14.6 0.0 1.7 1 0 0 1 1 1 0 Putative NAD(P)-binding GIDA PF01134.22 gi|89256116|ref|YP_513478.1| - 0.039 13.1 0.2 0.067 12.3 0.2 1.4 1 0 0 1 1 1 0 Glucose inhibited division protein A ApbA PF02558.16 gi|89256116|ref|YP_513478.1| - 0.083 12.5 2.1 0.14 11.8 0.1 2.4 4 0 0 4 4 4 0 Ketopantoate reductase PanE/ApbA Queuosine_synth PF02547.15 gi|89256118|ref|YP_513480.1| - 1.2e-131 438.7 0.0 1.4e-131 438.5 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein Hydrolase_3 PF08282.12 gi|89256119|ref|YP_513481.1| - 3.8e-52 177.5 1.4 4.3e-52 177.4 1.4 1.0 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|89256119|ref|YP_513481.1| - 1.1e-07 32.3 0.6 0.027 14.8 0.0 3.4 2 2 1 3 3 3 3 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|89256119|ref|YP_513481.1| - 1.1e-06 29.2 0.4 0.0081 16.6 0.1 3.0 2 1 0 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|89256119|ref|YP_513481.1| - 0.0002 21.0 0.0 0.041 13.4 0.0 2.4 1 1 0 1 1 1 1 Sucrose-6F-phosphate phosphohydrolase HAD_2 PF13419.6 gi|89256119|ref|YP_513481.1| - 0.0013 18.9 1.9 4.1 7.5 0.0 3.5 2 1 1 3 3 3 2 Haloacid dehalogenase-like hydrolase Trehalose_PPase PF02358.16 gi|89256119|ref|YP_513481.1| - 0.012 14.8 0.0 0.02 14.0 0.0 1.4 1 0 0 1 1 1 0 Trehalose-phosphatase Vut_1 PF02592.15 gi|89256120|ref|YP_513482.1| - 2.4e-34 118.8 10.8 2.4e-34 118.8 10.8 1.7 2 0 0 2 2 2 1 Putative vitamin uptake transporter Pho88 PF10032.9 gi|89256120|ref|YP_513482.1| - 0.067 12.4 0.3 0.6 9.3 0.0 2.2 2 0 0 2 2 2 0 Phosphate transport (Pho88) Glyoxalase PF00903.25 gi|89256121|ref|YP_513483.1| - 1.1e-24 87.1 0.2 1.2e-24 86.9 0.2 1.0 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|89256121|ref|YP_513483.1| - 1.1e-12 48.2 0.0 8.1e-12 45.4 0.0 1.9 1 1 1 2 2 2 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.7 gi|89256121|ref|YP_513483.1| - 6.1e-08 32.6 0.0 7.2e-08 32.4 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_6 PF18029.1 gi|89256121|ref|YP_513483.1| - 4e-06 27.6 0.0 5.7e-06 27.1 0.0 1.2 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_3 PF13468.6 gi|89256121|ref|YP_513483.1| - 0.0078 16.3 0.0 0.22 11.6 0.0 2.2 1 1 1 2 2 2 1 Glyoxalase-like domain CppA_N PF14506.6 gi|89256121|ref|YP_513483.1| - 0.044 13.9 0.0 0.074 13.1 0.0 1.5 2 0 0 2 2 2 0 CppA N-terminal DDE_3 PF13358.6 gi|89256122|ref|YP_513484.1| - 9.9e-30 103.2 0.2 3.2e-29 101.6 0.0 1.8 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.16 gi|89256122|ref|YP_513484.1| - 0.0029 17.6 1.5 0.0084 16.2 0.6 2.3 2 1 0 2 2 2 1 Transposase HTH_29 PF13551.6 gi|89256122|ref|YP_513484.1| - 0.0033 17.4 0.0 0.008 16.2 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn helix HTH_40 PF14493.6 gi|89256122|ref|YP_513484.1| - 0.011 16.2 0.1 0.069 13.6 0.0 2.3 3 1 0 3 3 3 0 Helix-turn-helix domain HTH_28 PF13518.6 gi|89256122|ref|YP_513484.1| - 0.026 14.6 0.0 0.073 13.2 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain CENP-B_N PF04218.13 gi|89256122|ref|YP_513484.1| - 0.097 12.3 0.0 0.98 9.1 0.0 2.5 3 0 0 3 3 3 0 CENP-B N-terminal DNA-binding domain HTH_23 PF13384.6 gi|89256122|ref|YP_513484.1| - 0.12 12.2 0.0 0.34 10.8 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain rve PF00665.26 gi|89256122|ref|YP_513484.1| - 0.15 12.3 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 Integrase core domain DDE_Tnp_ISAZ013 PF07592.11 gi|89256122|ref|YP_513484.1| - 0.17 10.9 0.3 1.1 8.1 0.1 2.0 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain Rib_5-P_isom_A PF06026.14 gi|89256123|ref|YP_513485.1| - 4.3e-57 192.5 0.3 5.3e-57 192.2 0.3 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.22 gi|89256123|ref|YP_513485.1| - 0.019 14.9 1.2 0.078 12.9 0.3 2.1 1 1 1 2 2 2 0 DeoR C terminal sensor domain DUF3139 PF11337.8 gi|89256125|ref|YP_513487.1| - 0.025 15.2 0.1 0.049 14.3 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3139) FtsK_alpha PF17854.1 gi|89256125|ref|YP_513487.1| - 0.081 13.1 0.0 0.12 12.5 0.0 1.3 1 0 0 1 1 1 0 FtsK alpha domain GIDA PF01134.22 gi|89256126|ref|YP_513488.1| - 1.6e-166 554.2 0.5 3.9e-166 553.0 0.0 1.7 2 0 0 2 2 2 1 Glucose inhibited division protein A GIDA_assoc PF13932.6 gi|89256126|ref|YP_513488.1| - 3.9e-75 252.6 1.5 6.5e-75 251.9 1.5 1.4 1 0 0 1 1 1 1 GidA associated domain FAD_oxidored PF12831.7 gi|89256126|ref|YP_513488.1| - 3.1e-07 30.1 0.3 4.9e-07 29.4 0.3 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|89256126|ref|YP_513488.1| - 1.4e-05 24.5 0.8 2.7e-05 23.6 0.8 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|89256126|ref|YP_513488.1| - 0.00015 21.0 7.0 0.0066 15.6 1.5 2.5 3 0 0 3 3 3 2 FAD binding domain AlaDh_PNT_C PF01262.21 gi|89256126|ref|YP_513488.1| - 0.0021 17.4 0.6 0.0047 16.3 0.6 1.5 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox PF00070.27 gi|89256126|ref|YP_513488.1| - 0.0022 18.5 0.5 0.0078 16.8 0.5 2.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HRDC PF00570.23 gi|89256126|ref|YP_513488.1| - 0.0055 16.7 0.0 0.019 14.9 0.0 1.8 2 0 0 2 2 2 1 HRDC domain HI0933_like PF03486.14 gi|89256126|ref|YP_513488.1| - 0.017 13.9 5.4 0.04 12.6 1.1 2.9 3 1 1 4 4 4 0 HI0933-like protein Pyr_redox_3 PF13738.6 gi|89256126|ref|YP_513488.1| - 0.11 11.8 0.5 0.49 9.6 0.1 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|89256126|ref|YP_513488.1| - 0.41 10.9 2.7 2.4 8.4 1.3 2.8 3 0 0 3 3 3 0 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|89256126|ref|YP_513488.1| - 0.66 9.2 4.7 4.8 6.4 4.7 2.3 1 1 0 1 1 1 0 Thi4 family FUSC_2 PF13515.6 gi|89256128|ref|YP_513490.1| - 1.3e-09 38.2 19.5 1.3e-09 38.2 19.5 1.7 1 1 1 2 2 2 1 Fusaric acid resistance protein-like Arv1 PF04161.13 gi|89256128|ref|YP_513490.1| - 0.018 15.2 3.5 0.018 15.2 3.5 2.8 1 1 1 3 3 3 0 Arv1-like family DUF1422 PF07226.11 gi|89256128|ref|YP_513490.1| - 0.12 12.4 5.9 0.25 11.4 5.9 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1422) FUSC PF04632.12 gi|89256128|ref|YP_513490.1| - 0.15 10.6 7.9 2.8 6.4 5.6 2.0 1 1 1 2 2 2 0 Fusaric acid resistance protein family LysR_substrate PF03466.20 gi|89256129|ref|YP_513491.1| - 1.5e-14 53.9 0.0 1.6e-14 53.8 0.0 1.0 1 0 0 1 1 1 1 LysR substrate binding domain adh_short PF00106.25 gi|89256130|ref|YP_513492.1| - 2.5e-52 177.2 1.2 3.1e-52 176.9 1.2 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|89256130|ref|YP_513492.1| - 1.9e-40 138.9 1.3 2.3e-40 138.6 1.3 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|89256130|ref|YP_513492.1| - 4.1e-12 46.4 0.5 9.2e-12 45.2 0.4 1.6 1 1 1 2 2 2 1 KR domain NAD_binding_10 PF13460.6 gi|89256130|ref|YP_513492.1| - 3.2e-07 30.4 1.2 5.8e-07 29.6 1.2 1.4 1 1 0 1 1 1 1 NAD(P)H-binding Epimerase PF01370.21 gi|89256130|ref|YP_513492.1| - 1.7e-06 27.7 0.7 4.4e-06 26.3 0.1 2.2 2 1 0 2 2 2 1 NAD dependent epimerase/dehydratase family NmrA PF05368.13 gi|89256130|ref|YP_513492.1| - 0.012 15.2 0.1 0.024 14.2 0.1 1.5 1 0 0 1 1 1 0 NmrA-like family RmlD_sub_bind PF04321.17 gi|89256130|ref|YP_513492.1| - 0.014 14.5 0.0 0.02 14.0 0.0 1.3 1 0 0 1 1 1 0 RmlD substrate binding domain TrkA_N PF02254.18 gi|89256130|ref|YP_513492.1| - 0.014 15.6 0.2 0.041 14.1 0.2 1.8 1 0 0 1 1 1 0 TrkA-N domain ApbA PF02558.16 gi|89256130|ref|YP_513492.1| - 0.027 14.1 0.2 0.084 12.5 0.2 1.9 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA DUF1776 PF08643.10 gi|89256130|ref|YP_513492.1| - 0.028 13.8 0.0 0.038 13.4 0.0 1.1 1 0 0 1 1 1 0 Fungal family of unknown function (DUF1776) RNase_T PF00929.24 gi|89256131|ref|YP_513493.1| - 7.3e-16 59.1 0.3 7.4e-15 55.9 0.0 2.7 3 1 0 3 3 3 1 Exonuclease Exonuc_X-T_C PF08411.10 gi|89256131|ref|YP_513493.1| - 1.3e-10 40.9 5.7 7.2e-08 31.9 5.7 2.6 1 1 0 1 1 1 1 Exonuclease C-terminal DUF3579 PF12112.8 gi|89256131|ref|YP_513493.1| - 0.15 12.7 0.2 1.4 9.5 0.1 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF3579) UvrB_inter PF17757.1 gi|89256132|ref|YP_513494.1| - 2.1e-32 111.2 0.1 6.9e-32 109.5 0.1 2.0 1 0 0 1 1 1 1 UvrB interaction domain UvrB PF12344.8 gi|89256132|ref|YP_513494.1| - 9.8e-22 76.5 1.0 9.8e-22 76.5 1.0 2.4 3 0 0 3 3 3 1 Ultra-violet resistance protein B Helicase_C PF00271.31 gi|89256132|ref|YP_513494.1| - 1.7e-17 63.7 1.9 3e-17 62.9 0.1 2.4 3 0 0 3 3 3 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|89256132|ref|YP_513494.1| - 2e-13 50.7 0.0 7.6e-12 45.6 0.0 2.6 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit UVR PF02151.19 gi|89256132|ref|YP_513494.1| - 1.3e-07 31.1 3.5 1.3e-07 31.1 3.5 2.6 2 0 0 2 2 1 1 UvrB/uvrC motif DEAD PF00270.29 gi|89256132|ref|YP_513494.1| - 2.5e-06 27.4 0.5 0.0007 19.4 0.0 3.9 4 1 0 4 4 4 1 DEAD/DEAH box helicase AAA_30 PF13604.6 gi|89256132|ref|YP_513494.1| - 0.00023 21.0 0.0 0.0055 16.4 0.0 2.8 3 0 0 3 3 3 1 AAA domain Kinesin PF00225.23 gi|89256132|ref|YP_513494.1| - 0.00071 18.6 0.1 0.00071 18.6 0.1 1.8 2 0 0 2 2 2 1 Kinesin motor domain Microtub_bd PF16796.5 gi|89256132|ref|YP_513494.1| - 0.0014 18.6 0.0 0.0045 16.9 0.0 1.9 1 0 0 1 1 1 1 Microtubule binding AAA_19 PF13245.6 gi|89256132|ref|YP_513494.1| - 0.0015 18.9 1.8 4.4 7.6 0.0 3.6 3 1 1 4 4 4 2 AAA domain eIF3_p135 PF12807.7 gi|89256132|ref|YP_513494.1| - 0.0076 16.3 0.3 0.11 12.5 0.0 2.6 2 1 0 2 2 2 1 Translation initiation factor eIF3 subunit 135 AAA_33 PF13671.6 gi|89256132|ref|YP_513494.1| - 0.025 14.7 0.0 0.097 12.8 0.0 2.0 1 0 0 1 1 1 0 AAA domain SWI2_SNF2 PF18766.1 gi|89256132|ref|YP_513494.1| - 0.029 14.1 2.2 0.44 10.2 0.0 3.2 4 0 0 4 4 4 0 SWI2/SNF2 ATPase GerPC PF10737.9 gi|89256132|ref|YP_513494.1| - 0.037 14.1 0.3 0.037 14.1 0.3 3.1 3 0 0 3 3 3 0 Spore germination protein GerPC DUF87 PF01935.17 gi|89256132|ref|YP_513494.1| - 0.04 14.0 5.3 0.069 13.2 0.0 3.6 4 1 0 4 4 4 0 Helicase HerA, central domain Methyltransf_25 PF13649.6 gi|89256132|ref|YP_513494.1| - 0.061 14.0 0.2 0.88 10.3 0.0 2.9 3 0 0 3 3 2 0 Methyltransferase domain AAA_22 PF13401.6 gi|89256132|ref|YP_513494.1| - 0.084 13.1 0.5 0.71 10.1 0.0 2.8 3 0 0 3 3 2 0 AAA domain MitMem_reg PF13012.6 gi|89256132|ref|YP_513494.1| - 0.12 12.8 0.5 0.45 11.0 0.2 2.2 2 0 0 2 2 2 0 Maintenance of mitochondrial structure and function NERD PF08378.11 gi|89256133|ref|YP_513495.1| - 3.8e-21 75.6 0.8 6.5e-21 74.8 0.8 1.4 1 0 0 1 1 1 1 Nuclease-related domain Ntox22 PF15527.6 gi|89256133|ref|YP_513495.1| - 0.2 11.7 0.0 0.34 10.9 0.0 1.3 1 0 0 1 1 1 0 Bacterial toxin 22 Asp_Glu_race PF01177.22 gi|89256134|ref|YP_513496.1| - 3.8e-28 98.9 0.8 4.9e-28 98.5 0.8 1.1 1 0 0 1 1 1 1 Asp/Glu/Hydantoin racemase MFS_1 PF07690.16 gi|89256135|ref|YP_513497.1| - 1.3e-25 90.1 84.2 7.3e-22 77.8 51.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|89256135|ref|YP_513497.1| - 6.1e-16 58.3 48.9 1.6e-09 37.1 19.0 2.0 1 1 1 2 2 2 2 Sugar (and other) transporter DDE_Tnp_1_2 PF13586.6 gi|89256136|ref|YP_513498.1| - 1e-13 51.5 0.0 1.8e-13 50.7 0.0 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|89256136|ref|YP_513498.1| - 4.1e-12 46.2 2.0 3.8e-11 43.1 2.0 1.9 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 gi|89256136|ref|YP_513498.1| - 6.8e-08 32.7 0.0 9.5e-08 32.2 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.6 gi|89256136|ref|YP_513498.1| - 0.00017 21.3 0.2 0.00023 20.9 0.2 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease DUF4096 PF13340.6 gi|89256136|ref|YP_513498.1| - 0.0056 16.9 0.0 0.011 15.9 0.0 1.5 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) Alpha-E PF04168.12 gi|89256137|ref|YP_513499.1| - 1e-48 166.6 0.4 1.2e-48 166.4 0.4 1.0 1 0 0 1 1 1 1 A predicted alpha-helical domain with a conserved ER motif. GATase_4 PF13230.6 gi|89256138|ref|YP_513500.1| - 1.7e-35 122.3 0.0 2.7e-35 121.6 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Transglut_core PF01841.19 gi|89256138|ref|YP_513500.1| - 2.9e-22 79.2 0.1 5.3e-22 78.4 0.1 1.4 1 0 0 1 1 1 1 Transglutaminase-like superfamily Bact_transglu_N PF08379.10 gi|89256138|ref|YP_513500.1| - 5e-15 56.2 0.0 9.6e-15 55.3 0.0 1.5 1 0 0 1 1 1 1 Bacterial transglutaminase-like N-terminal region Peptidase_M20 PF01546.28 gi|89256139|ref|YP_513501.1| - 1.3e-28 100.1 0.1 1.6e-28 99.8 0.1 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|89256139|ref|YP_513501.1| - 1.5e-14 53.8 0.0 3e-14 52.8 0.0 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|89256139|ref|YP_513501.1| - 0.026 14.2 0.0 0.14 11.8 0.0 1.9 2 0 0 2 2 2 0 Peptidase family M28 Exonuc_VII_L PF02601.15 gi|89256140|ref|YP_513502.1| - 3.1e-59 201.0 0.5 3.7e-59 200.8 0.5 1.1 1 0 0 1 1 1 1 Exonuclease VII, large subunit tRNA_anti_2 PF13742.6 gi|89256140|ref|YP_513502.1| - 6.1e-13 48.8 0.0 2.1e-12 47.1 0.0 2.0 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain DUF883 PF05957.13 gi|89256140|ref|YP_513502.1| - 0.18 12.5 0.0 0.48 11.1 0.0 1.7 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF883) DUF1981 PF09324.10 gi|89256140|ref|YP_513502.1| - 0.18 11.7 1.0 15 5.5 0.1 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1981) FANCI_S2 PF14676.6 gi|89256140|ref|YP_513502.1| - 0.35 11.2 1.4 0.8 10.0 0.2 2.1 1 1 1 2 2 2 0 FANCI solenoid 2 DUF3864 PF12980.7 gi|89256141|ref|YP_513503.1| - 0.00029 21.1 0.1 0.00041 20.6 0.1 1.3 1 1 0 1 1 1 1 Domain of Unknown Function with PDB structure (DUF3864) Exonuc_VII_S PF02609.16 gi|89256141|ref|YP_513503.1| - 0.0014 18.7 4.2 0.0029 17.6 3.9 1.7 1 1 0 1 1 1 1 Exonuclease VII small subunit FadA PF09403.10 gi|89256141|ref|YP_513503.1| - 0.045 14.2 4.4 0.056 13.9 4.4 1.1 1 0 0 1 1 1 0 Adhesion protein FadA DUF4004 PF13171.6 gi|89256141|ref|YP_513503.1| - 0.047 13.9 0.4 0.047 13.9 0.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF4004) Minor_capsid_3 PF12691.7 gi|89256141|ref|YP_513503.1| - 0.076 13.4 0.2 0.089 13.2 0.2 1.2 1 0 0 1 1 1 0 Minor capsid protein from bacteriophage Mei4 PF13971.6 gi|89256142|ref|YP_513504.1| - 0.34 10.4 2.5 0.38 10.2 2.5 1.1 1 0 0 1 1 1 0 Meiosis-specific protein Mei4 ATP_bind_3 PF01171.20 gi|89256143|ref|YP_513505.1| - 2.3e-12 47.0 0.0 3.3e-12 46.5 0.0 1.2 1 0 0 1 1 1 1 PP-loop family Ish1 PF10281.9 gi|89256143|ref|YP_513505.1| - 0.0039 17.5 0.8 0.017 15.4 0.2 2.5 2 0 0 2 2 2 1 Putative stress-responsive nuclear envelope protein SmpB PF01668.18 gi|89256144|ref|YP_513506.1| - 3.9e-57 192.2 0.6 4.4e-57 192.0 0.6 1.0 1 0 0 1 1 1 1 SmpB protein FokI_C PF02980.16 gi|89256144|ref|YP_513506.1| - 0.079 13.0 0.0 0.19 11.7 0.0 1.7 2 0 0 2 2 2 0 Restriction endonuclease FokI, catalytic domain Polyketide_cyc PF03364.20 gi|89256145|ref|YP_513507.1| - 8.3e-27 94.0 0.0 9.5e-27 93.8 0.0 1.0 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc2 PF10604.9 gi|89256145|ref|YP_513507.1| - 5.5e-10 39.7 0.0 7e-10 39.3 0.0 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport COXG PF06240.13 gi|89256145|ref|YP_513507.1| - 0.031 14.0 0.0 0.089 12.5 0.0 1.9 1 1 0 1 1 1 0 Carbon monoxide dehydrogenase subunit G (CoxG) Ub-RnfH PF03658.14 gi|89256146|ref|YP_513508.1| - 1.2e-26 92.9 0.2 1.4e-26 92.6 0.2 1.1 1 0 0 1 1 1 1 RnfH family Ubiquitin TGS PF02824.21 gi|89256146|ref|YP_513508.1| - 0.014 15.4 0.1 0.027 14.5 0.1 1.7 1 1 0 1 1 1 0 TGS domain ThiS PF02597.20 gi|89256146|ref|YP_513508.1| - 0.087 13.5 0.1 0.13 12.9 0.1 1.3 1 0 0 1 1 1 0 ThiS family UPF0058 PF01893.16 gi|89256146|ref|YP_513508.1| - 0.12 12.7 0.1 0.37 11.1 0.0 1.7 1 1 1 2 2 2 0 Uncharacterised protein family UPF0058 DAO PF01266.24 gi|89256147|ref|YP_513509.1| - 2.4e-35 122.7 0.0 2.8e-35 122.5 0.0 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|89256147|ref|YP_513509.1| - 1.4e-08 34.8 0.0 3e-08 33.8 0.0 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|89256147|ref|YP_513509.1| - 7.5e-05 22.1 0.0 0.00017 20.9 0.0 1.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|89256147|ref|YP_513509.1| - 0.00033 20.7 0.0 0.0013 18.8 0.0 1.9 2 0 0 2 2 2 1 FAD-NAD(P)-binding FAD_binding_2 PF00890.24 gi|89256147|ref|YP_513509.1| - 0.0016 17.6 0.0 0.0022 17.1 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.27 gi|89256147|ref|YP_513509.1| - 0.0035 17.8 0.1 0.019 15.5 0.0 2.3 3 0 0 3 3 1 1 Pyridine nucleotide-disulphide oxidoreductase Mqo PF06039.15 gi|89256147|ref|YP_513509.1| - 0.0057 15.3 0.4 1.5 7.3 0.0 2.8 2 1 1 3 3 3 2 Malate:quinone oxidoreductase (Mqo) K_oxygenase PF13434.6 gi|89256147|ref|YP_513509.1| - 0.0084 15.3 0.0 0.94 8.6 0.0 2.2 1 1 1 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) TrkA_N PF02254.18 gi|89256147|ref|YP_513509.1| - 0.0089 16.3 0.0 0.028 14.7 0.0 1.9 2 0 0 2 2 1 1 TrkA-N domain Thi4 PF01946.17 gi|89256147|ref|YP_513509.1| - 0.01 15.1 0.0 0.034 13.4 0.0 1.9 2 0 0 2 2 2 1 Thi4 family Lycopene_cycl PF05834.12 gi|89256147|ref|YP_513509.1| - 0.017 14.2 0.5 0.025 13.6 0.0 1.5 2 0 0 2 2 2 0 Lycopene cyclase protein Acetyltransf_15 PF17013.5 gi|89256147|ref|YP_513509.1| - 0.024 14.1 0.3 0.071 12.6 0.1 1.8 2 0 0 2 2 2 0 Putative acetyl-transferase Shikimate_DH PF01488.20 gi|89256147|ref|YP_513509.1| - 0.044 13.9 0.0 0.26 11.4 0.0 2.3 3 0 0 3 3 3 0 Shikimate / quinate 5-dehydrogenase ApbA PF02558.16 gi|89256147|ref|YP_513509.1| - 0.051 13.2 0.0 0.12 12.1 0.0 1.6 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA GIDA PF01134.22 gi|89256147|ref|YP_513509.1| - 0.07 12.2 0.1 0.12 11.4 0.1 1.4 1 0 0 1 1 1 0 Glucose inhibited division protein A Sacchrp_dh_NADP PF03435.18 gi|89256147|ref|YP_513509.1| - 0.091 13.0 0.0 0.25 11.6 0.0 1.8 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain 3HCDH_N PF02737.18 gi|89256147|ref|YP_513509.1| - 0.17 11.7 0.0 0.31 10.9 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain MlaA PF04333.13 gi|89256148|ref|YP_513510.1| - 1.2e-53 181.7 2.0 1.7e-53 181.2 2.0 1.2 1 0 0 1 1 1 1 MlaA lipoprotein G_glu_transpept PF01019.21 gi|89256149|ref|YP_513511.1| - 9.4e-178 592.1 0.1 1.1e-177 591.9 0.1 1.0 1 0 0 1 1 1 1 Gamma-glutamyltranspeptidase Cu PF17563.2 gi|89256149|ref|YP_513511.1| - 0.2 11.9 1.7 0.48 10.7 1.0 2.0 2 0 0 2 2 2 0 Cupiennin Methyltransf_11 PF08241.12 gi|89256150|ref|YP_513512.1| - 3.6e-13 50.0 0.0 6.7e-13 49.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|89256150|ref|YP_513512.1| - 4.8e-10 40.0 0.0 1.2e-09 38.7 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|89256150|ref|YP_513512.1| - 9.6e-07 28.7 0.0 1.4e-06 28.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|89256150|ref|YP_513512.1| - 1.4e-06 29.0 0.0 2.4e-06 28.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|89256150|ref|YP_513512.1| - 3.2e-06 26.7 0.0 4.7e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family DREV PF05219.12 gi|89256150|ref|YP_513512.1| - 0.00041 19.5 0.0 0.00052 19.2 0.0 1.1 1 0 0 1 1 1 1 DREV methyltransferase Methyltransf_8 PF05148.15 gi|89256150|ref|YP_513512.1| - 0.0018 18.2 0.0 0.0029 17.5 0.0 1.3 1 0 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_18 PF12847.7 gi|89256150|ref|YP_513512.1| - 0.031 14.2 0.1 0.05 13.5 0.1 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_23 PF13489.6 gi|89256150|ref|YP_513512.1| - 0.034 14.0 0.0 0.053 13.4 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain MTS PF05175.14 gi|89256150|ref|YP_513512.1| - 0.035 13.7 0.0 0.058 12.9 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase small domain DUF4734 PF15881.5 gi|89256150|ref|YP_513512.1| - 0.24 11.6 2.2 15 5.8 0.1 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4734) GTP_EFTU PF00009.27 gi|89256151|ref|YP_513513.1| - 7.9e-56 188.7 0.1 1.3e-55 188.0 0.1 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_C PF00679.24 gi|89256151|ref|YP_513513.1| - 4.4e-22 77.9 0.0 8.9e-22 76.9 0.0 1.6 1 0 0 1 1 1 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.25 gi|89256151|ref|YP_513513.1| - 1.8e-09 37.9 2.3 4.8e-09 36.5 2.3 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|89256151|ref|YP_513513.1| - 3.4e-07 30.3 0.2 1.1e-06 28.7 0.1 1.9 2 0 0 2 2 2 1 50S ribosome-binding GTPase EFG_II PF14492.6 gi|89256151|ref|YP_513513.1| - 0.00018 21.5 0.1 0.00051 20.1 0.1 1.7 1 0 0 1 1 1 1 Elongation Factor G, domain II Septin PF00735.18 gi|89256151|ref|YP_513513.1| - 0.0028 17.0 0.0 0.0049 16.2 0.0 1.3 1 0 0 1 1 1 1 Septin FeoB_N PF02421.18 gi|89256151|ref|YP_513513.1| - 0.0047 16.5 0.0 0.61 9.6 0.0 3.7 4 1 0 4 4 4 1 Ferrous iron transport protein B SRPRB PF09439.10 gi|89256151|ref|YP_513513.1| - 0.0077 15.7 0.4 0.064 12.7 0.1 2.4 2 1 0 2 2 2 1 Signal recognition particle receptor beta subunit Dynamin_N PF00350.23 gi|89256151|ref|YP_513513.1| - 0.062 13.4 0.0 2.6 8.1 0.0 2.3 1 1 1 2 2 2 0 Dynamin family Fzo_mitofusin PF04799.13 gi|89256152|ref|YP_513514.1| - 0.14 11.7 4.4 0.35 10.4 1.2 2.6 2 0 0 2 2 2 0 fzo-like conserved region KxDL PF10241.9 gi|89256152|ref|YP_513514.1| - 0.3 11.4 11.1 0.97 9.8 1.4 3.7 3 0 0 3 3 3 0 Uncharacterized conserved protein HR1 PF02185.16 gi|89256152|ref|YP_513514.1| - 1.7 8.8 12.3 0.075 13.2 3.4 3.3 4 1 0 4 4 4 0 Hr1 repeat Baculo_PEP_C PF04513.12 gi|89256153|ref|YP_513515.1| - 0.011 15.8 1.5 0.12 12.4 0.4 2.1 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF2458 PF10454.9 gi|89256153|ref|YP_513515.1| - 0.012 15.3 0.1 0.021 14.5 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2458) ZnuA PF01297.17 gi|89256153|ref|YP_513515.1| - 0.031 13.7 2.5 0.07 12.5 0.1 2.1 2 0 0 2 2 2 0 Zinc-uptake complex component A periplasmic V-SNARE PF05008.15 gi|89256153|ref|YP_513515.1| - 0.053 13.9 8.9 0.31 11.5 0.5 3.1 2 1 1 3 3 3 0 Vesicle transport v-SNARE protein N-terminus Syntaxin_2 PF14523.6 gi|89256153|ref|YP_513515.1| - 0.072 13.5 3.9 0.13 12.6 3.9 1.5 1 0 0 1 1 1 0 Syntaxin-like protein TPR_MLP1_2 PF07926.12 gi|89256153|ref|YP_513515.1| - 0.092 12.8 4.4 1.1 9.3 0.5 2.2 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein T4BSS_DotI_IcmL PF11393.8 gi|89256153|ref|YP_513515.1| - 0.098 12.1 0.3 0.27 10.7 0.2 1.8 1 1 1 2 2 2 0 Type-IV b secretion system, inner-membrane complex component YgaB PF14182.6 gi|89256153|ref|YP_513515.1| - 0.13 12.7 3.3 0.088 13.2 1.2 1.8 2 0 0 2 2 2 0 YgaB-like protein DNA_repr_REX1B PF14966.6 gi|89256153|ref|YP_513515.1| - 0.16 12.6 1.2 0.49 11.1 0.4 2.2 1 1 1 2 2 2 0 DNA repair REX1-B SH3BP5 PF05276.14 gi|89256153|ref|YP_513515.1| - 0.17 11.6 5.5 0.14 11.9 1.4 2.1 2 0 0 2 2 2 0 SH3 domain-binding protein 5 (SH3BP5) NPV_P10 PF05531.12 gi|89256153|ref|YP_513515.1| - 0.27 11.7 3.3 1.2 9.7 1.2 2.6 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein DUF5344 PF17279.2 gi|89256153|ref|YP_513515.1| - 0.64 10.6 10.0 7.6 7.2 2.5 3.0 2 1 0 2 2 2 0 Family of unknown function (DUF5344) Fib_alpha PF08702.10 gi|89256153|ref|YP_513515.1| - 0.7 10.1 8.9 2.8 8.1 0.8 2.3 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family Syntaxin-6_N PF09177.11 gi|89256153|ref|YP_513515.1| - 1.1 9.9 5.6 1.2 9.7 0.8 2.2 1 1 1 2 2 2 0 Syntaxin 6, N-terminal DUF5082 PF16888.5 gi|89256153|ref|YP_513515.1| - 1.2 9.4 11.6 1.3 9.3 4.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF5082) DASH_Ask1 PF08655.10 gi|89256153|ref|YP_513515.1| - 1.7 8.6 7.3 2.7 8.0 0.2 3.5 2 2 1 3 3 3 0 DASH complex subunit Ask1 DUF4097 PF13349.6 gi|89256154|ref|YP_513516.1| - 0.014 14.8 0.2 0.014 14.8 0.2 1.0 1 0 0 1 1 1 0 Putative adhesin CSD PF00313.22 gi|89256155|ref|YP_513517.1| - 1.4e-11 44.1 2.1 2.6e-11 43.2 2.1 1.5 1 1 0 1 1 1 1 'Cold-shock' DNA-binding domain TackOD1 PF18551.1 gi|89256155|ref|YP_513517.1| - 0.0057 16.3 0.4 0.0075 16.0 0.4 1.1 1 0 0 1 1 1 1 Thaumarchaeal output domain 1 zf-ribbon_3 PF13248.6 gi|89256155|ref|YP_513517.1| - 0.019 14.4 0.4 5.6 6.5 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.7 gi|89256155|ref|YP_513517.1| - 0.031 14.3 0.5 0.062 13.3 0.5 1.5 1 1 0 1 1 1 0 Double zinc ribbon DUF5113 PF17140.4 gi|89256155|ref|YP_513517.1| - 0.054 13.3 0.0 0.079 12.8 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5113) OB_RNB PF08206.11 gi|89256155|ref|YP_513517.1| - 0.059 13.1 0.2 0.089 12.5 0.2 1.4 1 0 0 1 1 1 0 Ribonuclease B OB domain zinc_ribbon_9 PF14369.6 gi|89256155|ref|YP_513517.1| - 0.21 11.9 2.1 0.41 10.9 0.1 2.1 1 1 1 2 2 2 0 zinc-ribbon DiS_P_DiS PF06750.13 gi|89256155|ref|YP_513517.1| - 0.3 11.2 2.0 6.5 6.9 0.1 2.2 1 1 1 2 2 2 0 Bacterial Peptidase A24 N-terminal domain zf-LITAF-like PF10601.9 gi|89256155|ref|YP_513517.1| - 0.88 9.9 3.8 3.2 8.1 3.8 2.0 1 1 0 1 1 1 0 LITAF-like zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|89256155|ref|YP_513517.1| - 1.4 9.1 4.3 0.96 9.6 0.2 2.5 2 1 1 3 3 3 0 Zinc ribbon domain DDE_3 PF13358.6 gi|89256156|ref|YP_513518.1| - 9.9e-30 103.2 0.2 3.2e-29 101.6 0.0 1.8 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.16 gi|89256156|ref|YP_513518.1| - 0.0029 17.6 1.5 0.0084 16.2 0.6 2.3 2 1 0 2 2 2 1 Transposase HTH_29 PF13551.6 gi|89256156|ref|YP_513518.1| - 0.0033 17.4 0.0 0.008 16.2 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn helix HTH_40 PF14493.6 gi|89256156|ref|YP_513518.1| - 0.011 16.2 0.1 0.069 13.6 0.0 2.3 3 1 0 3 3 3 0 Helix-turn-helix domain HTH_28 PF13518.6 gi|89256156|ref|YP_513518.1| - 0.026 14.6 0.0 0.073 13.2 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain CENP-B_N PF04218.13 gi|89256156|ref|YP_513518.1| - 0.097 12.3 0.0 0.98 9.1 0.0 2.5 3 0 0 3 3 3 0 CENP-B N-terminal DNA-binding domain HTH_23 PF13384.6 gi|89256156|ref|YP_513518.1| - 0.12 12.2 0.0 0.34 10.8 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain rve PF00665.26 gi|89256156|ref|YP_513518.1| - 0.15 12.3 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 Integrase core domain DDE_Tnp_ISAZ013 PF07592.11 gi|89256156|ref|YP_513518.1| - 0.17 10.9 0.3 1.1 8.1 0.1 2.0 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain Sel1 PF08238.12 gi|89256157|ref|YP_513519.1| - 3.3e-17 62.5 35.0 1.5e-07 31.9 3.5 5.9 5 1 0 5 5 5 4 Sel1 repeat TPR_2 PF07719.17 gi|89256157|ref|YP_513519.1| - 0.0023 17.9 4.6 0.0023 17.9 4.6 7.0 6 1 0 6 6 6 1 Tetratricopeptide repeat TPR_16 PF13432.6 gi|89256157|ref|YP_513519.1| - 0.0099 16.5 1.3 0.0099 16.5 1.3 2.6 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_14 PF13428.6 gi|89256157|ref|YP_513519.1| - 0.023 15.5 0.3 3 8.9 0.1 3.7 2 1 1 3 3 3 0 Tetratricopeptide repeat TPR_17 PF13431.6 gi|89256157|ref|YP_513519.1| - 0.75 10.3 14.8 15 6.2 0.5 5.3 3 1 1 4 4 4 0 Tetratricopeptide repeat TPR_6 PF13174.6 gi|89256157|ref|YP_513519.1| - 1 10.1 25.7 1.7 9.4 1.8 5.5 6 0 0 6 6 6 0 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|89256157|ref|YP_513519.1| - 1.3 9.3 24.3 0.067 13.4 6.2 4.2 4 1 1 5 5 5 0 Anaphase-promoting complex, cyclosome, subunit 3 TPR_12 PF13424.6 gi|89256157|ref|YP_513519.1| - 2.3 8.6 10.8 8.9 6.7 4.4 4.1 2 2 1 3 3 3 0 Tetratricopeptide repeat DUF4628 PF15429.6 gi|89256157|ref|YP_513519.1| - 4.6 6.8 10.8 0.25 11.0 2.6 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4628) MMR_HSR1 PF01926.23 gi|89256158|ref|YP_513520.1| - 5.4e-15 55.5 0.1 3.7e-14 52.8 0.0 2.2 2 1 0 2 2 2 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|89256158|ref|YP_513520.1| - 4.1e-08 32.9 0.1 3.1e-07 30.1 0.0 2.2 2 0 0 2 2 2 1 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|89256158|ref|YP_513520.1| - 1.4e-05 25.0 0.5 5.1e-05 23.2 0.5 2.0 1 1 0 1 1 1 1 RsgA GTPase Dynamin_N PF00350.23 gi|89256158|ref|YP_513520.1| - 0.0017 18.4 0.1 0.025 14.7 0.1 2.4 1 1 1 2 2 2 1 Dynamin family Arf PF00025.21 gi|89256158|ref|YP_513520.1| - 0.0056 16.2 0.0 0.014 14.9 0.0 1.7 1 0 0 1 1 1 1 ADP-ribosylation factor family AIG1 PF04548.16 gi|89256158|ref|YP_513520.1| - 0.025 13.9 0.0 0.048 13.0 0.0 1.5 1 0 0 1 1 1 0 AIG1 family ATP_bind_1 PF03029.17 gi|89256158|ref|YP_513520.1| - 0.12 12.2 0.6 64 3.2 0.0 3.4 3 1 1 4 4 4 0 Conserved hypothetical ATP binding protein Amidohydro_1 PF01979.20 gi|89256159|ref|YP_513521.1| - 2.2e-22 79.8 3.9 3.3e-22 79.3 3.9 1.2 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|89256159|ref|YP_513521.1| - 1.6e-09 37.8 0.0 0.00011 21.8 0.0 2.3 2 0 0 2 2 2 2 Amidohydrolase family Peptidase_M22 PF00814.25 gi|89256160|ref|YP_513522.1| - 6.4e-24 85.1 0.0 7.8e-24 84.8 0.0 1.1 1 0 0 1 1 1 1 Glycoprotease family SidE PF12252.8 gi|89256160|ref|YP_513522.1| - 0.027 12.1 0.4 0.033 11.8 0.4 1.1 1 0 0 1 1 1 0 Dot/Icm substrate protein GATase_4 PF13230.6 gi|89256161|ref|YP_513523.1| - 1.5e-14 53.6 0.0 1.8e-14 53.3 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferases class-II GATase_6 PF13522.6 gi|89256161|ref|YP_513523.1| - 1.6e-10 41.3 0.0 3.1e-10 40.3 0.0 1.4 1 1 0 1 1 1 1 Glutamine amidotransferase domain Vmethyltransf PF01660.17 gi|89256161|ref|YP_513523.1| - 0.08 11.8 0.0 0.13 11.1 0.0 1.3 1 0 0 1 1 1 0 Viral methyltransferase Aminotran_1_2 PF00155.21 gi|89256162|ref|YP_513524.1| - 3.2e-69 233.8 0.0 3.9e-69 233.6 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|89256162|ref|YP_513524.1| - 1.1e-06 28.2 0.1 1.8e-06 27.5 0.1 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|89256162|ref|YP_513524.1| - 1.8e-05 23.8 0.0 5.8e-05 22.2 0.0 1.8 1 1 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|89256162|ref|YP_513524.1| - 0.0001 21.0 0.3 0.00033 19.3 0.0 2.0 2 1 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme MMR_HSR1 PF01926.23 gi|89256163|ref|YP_513525.1| - 2.1e-24 85.8 0.4 4.6e-24 84.7 0.4 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase KH_2 PF07650.17 gi|89256163|ref|YP_513525.1| - 8.1e-15 54.4 3.2 8.1e-15 54.4 3.2 3.5 3 1 1 4 4 4 1 KH domain FeoB_N PF02421.18 gi|89256163|ref|YP_513525.1| - 3.3e-14 52.7 0.6 5.4e-14 52.0 0.6 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.27 gi|89256163|ref|YP_513525.1| - 3.8e-09 36.4 0.6 9.7e-07 28.5 0.6 2.4 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain AIG1 PF04548.16 gi|89256163|ref|YP_513525.1| - 2e-08 33.8 0.2 2.9e-08 33.3 0.2 1.2 1 0 0 1 1 1 1 AIG1 family RsgA_GTPase PF03193.16 gi|89256163|ref|YP_513525.1| - 2.9e-08 33.8 2.8 0.0037 17.2 0.4 2.2 2 0 0 2 2 2 2 RsgA GTPase Dynamin_N PF00350.23 gi|89256163|ref|YP_513525.1| - 1.3e-07 31.8 0.9 0.0027 17.8 0.1 2.4 1 1 1 2 2 2 2 Dynamin family PduV-EutP PF10662.9 gi|89256163|ref|YP_513525.1| - 0.00057 19.7 3.5 0.0023 17.7 3.5 1.9 1 1 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation MMR_HSR1_Xtn PF16897.5 gi|89256163|ref|YP_513525.1| - 0.0011 18.9 0.7 0.0011 18.9 0.7 1.8 2 0 0 2 2 2 1 C-terminal region of MMR_HSR1 domain Roc PF08477.13 gi|89256163|ref|YP_513525.1| - 0.002 18.4 1.1 0.0064 16.7 0.4 2.2 2 1 0 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase MeaB PF03308.16 gi|89256163|ref|YP_513525.1| - 0.0044 16.0 0.4 0.35 9.8 0.1 2.2 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB KH_1 PF00013.29 gi|89256163|ref|YP_513525.1| - 0.019 14.8 0.6 0.28 11.0 0.1 2.6 2 0 0 2 2 2 0 KH domain MnmE_helical PF12631.7 gi|89256163|ref|YP_513525.1| - 0.12 12.5 0.0 0.15 12.2 0.0 1.3 1 0 0 1 1 1 0 MnmE helical domain AAA_22 PF13401.6 gi|89256163|ref|YP_513525.1| - 0.12 12.6 0.0 0.24 11.7 0.0 1.7 1 1 0 1 1 1 0 AAA domain Phage_CI_C PF16452.5 gi|89256164|ref|YP_513526.1| - 0.087 13.1 0.2 0.097 13.0 0.2 1.1 1 0 0 1 1 1 0 Bacteriophage CI repressor C-terminal domain ADK PF00406.22 gi|89256165|ref|YP_513527.1| - 1.8e-55 187.2 0.2 2.6e-55 186.7 0.1 1.3 2 0 0 2 2 2 1 Adenylate kinase AAA_17 PF13207.6 gi|89256165|ref|YP_513527.1| - 1.3e-24 87.2 0.7 1.7e-24 86.8 0.1 1.5 2 0 0 2 2 2 1 AAA domain ADK_lid PF05191.14 gi|89256165|ref|YP_513527.1| - 2.2e-16 59.5 0.0 4.5e-16 58.5 0.0 1.6 1 0 0 1 1 1 1 Adenylate kinase, active site lid Hydin_ADK PF17213.3 gi|89256165|ref|YP_513527.1| - 6.3e-08 33.1 0.4 0.0018 18.6 0.0 2.4 2 0 0 2 2 2 2 Hydin Adenylate kinase-like domain AAA_18 PF13238.6 gi|89256165|ref|YP_513527.1| - 1.3e-05 25.8 0.0 2.7e-05 24.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|89256165|ref|YP_513527.1| - 0.0063 16.7 0.0 0.015 15.5 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_28 PF13521.6 gi|89256165|ref|YP_513527.1| - 0.023 14.9 0.0 0.036 14.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|89256165|ref|YP_513527.1| - 0.037 13.3 0.0 0.061 12.6 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin Cytidylate_kin PF02224.18 gi|89256165|ref|YP_513527.1| - 0.041 13.6 0.0 0.075 12.8 0.0 1.5 1 0 0 1 1 1 0 Cytidylate kinase RuvB_N PF05496.12 gi|89256165|ref|YP_513527.1| - 0.13 12.0 0.1 0.21 11.3 0.1 1.4 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain PilM_2 PF11104.8 gi|89256166|ref|YP_513528.1| - 0.0062 15.6 0.0 1.7 7.6 0.0 2.2 2 0 0 2 2 2 2 Type IV pilus assembly protein PilM; RecG_wedge PF17191.4 gi|89256166|ref|YP_513528.1| - 0.023 14.3 0.1 0.046 13.3 0.1 1.5 1 0 0 1 1 1 0 RecG wedge domain PilN PF05137.13 gi|89256167|ref|YP_513529.1| - 0.00063 19.8 0.1 0.0013 18.8 0.1 1.5 1 0 0 1 1 1 1 Fimbrial assembly protein (PilN) FlxA PF14282.6 gi|89256167|ref|YP_513529.1| - 0.019 14.9 0.2 0.04 13.9 0.2 1.5 1 0 0 1 1 1 0 FlxA-like protein DcrB PF08786.11 gi|89256167|ref|YP_513529.1| - 0.028 14.5 0.0 0.049 13.7 0.0 1.3 1 0 0 1 1 1 0 DcrB PilO PF04350.13 gi|89256168|ref|YP_513530.1| - 9e-10 38.9 2.2 9e-10 38.9 2.2 1.6 2 0 0 2 2 2 1 Pilus assembly protein, PilO T2SSM PF04612.12 gi|89256168|ref|YP_513530.1| - 1.9e-05 24.7 0.0 3.2e-05 24.1 0.0 1.4 1 1 0 1 1 1 1 Type II secretion system (T2SS), protein M Phage_GP20 PF06810.11 gi|89256168|ref|YP_513530.1| - 0.0087 15.9 1.1 0.0087 15.9 1.1 2.1 1 1 0 2 2 2 1 Phage minor structural protein GP20 FlxA PF14282.6 gi|89256168|ref|YP_513530.1| - 0.072 13.1 2.3 0.12 12.3 2.3 1.3 1 0 0 1 1 1 0 FlxA-like protein TarH PF02203.15 gi|89256168|ref|YP_513530.1| - 0.082 12.8 0.1 1.6 8.6 0.1 2.1 1 1 1 2 2 2 0 Tar ligand binding domain homologue PilP PF04351.13 gi|89256169|ref|YP_513531.1| - 1.2e-13 51.3 1.5 1.8e-13 50.7 1.5 1.5 1 1 0 1 1 1 1 Pilus assembly protein, PilP Secretin PF00263.21 gi|89256170|ref|YP_513532.1| - 2.9e-49 167.0 1.3 7e-49 165.7 0.4 2.1 2 0 0 2 2 2 1 Bacterial type II and III secretion system protein Secretin_N PF03958.17 gi|89256170|ref|YP_513532.1| - 5e-15 55.7 0.1 1.5e-14 54.1 0.1 1.9 1 0 0 1 1 1 1 Bacterial type II/III secretion system short domain STN PF07660.14 gi|89256170|ref|YP_513532.1| - 1.8e-05 24.5 0.4 0.00053 19.7 0.1 2.9 2 0 0 2 2 2 1 Secretin and TonB N terminus short domain SKI PF01202.22 gi|89256171|ref|YP_513533.1| - 1.1e-53 181.6 0.2 1.3e-53 181.4 0.2 1.0 1 0 0 1 1 1 1 Shikimate kinase AAA_33 PF13671.6 gi|89256171|ref|YP_513533.1| - 3.3e-08 33.8 0.0 9.4e-08 32.3 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|89256171|ref|YP_513533.1| - 3.6e-08 34.0 0.1 5.6e-08 33.4 0.1 1.3 1 1 0 1 1 1 1 AAA domain Cytidylate_kin2 PF13189.6 gi|89256171|ref|YP_513533.1| - 1e-07 32.3 0.1 0.00038 20.6 0.0 2.3 1 1 1 2 2 2 2 Cytidylate kinase-like family Cytidylate_kin PF02224.18 gi|89256171|ref|YP_513533.1| - 1.6e-06 28.0 0.6 0.00012 21.9 0.0 2.5 2 1 0 2 2 2 1 Cytidylate kinase AAA_22 PF13401.6 gi|89256171|ref|YP_513533.1| - 0.00014 22.1 0.1 0.00024 21.4 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|89256171|ref|YP_513533.1| - 0.00064 20.2 1.1 0.003 18.0 1.1 2.0 1 1 0 1 1 1 1 AAA domain CoaE PF01121.20 gi|89256171|ref|YP_513533.1| - 0.00065 19.4 0.3 0.045 13.4 0.0 2.2 2 0 0 2 2 2 1 Dephospho-CoA kinase dNK PF01712.19 gi|89256171|ref|YP_513533.1| - 0.00078 19.4 0.1 0.021 14.7 0.0 2.2 2 0 0 2 2 2 1 Deoxynucleoside kinase AAA PF00004.29 gi|89256171|ref|YP_513533.1| - 0.0012 19.3 0.1 0.0015 18.9 0.1 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|89256171|ref|YP_513533.1| - 0.0019 18.6 0.1 0.0032 17.9 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain ABC_tran PF00005.27 gi|89256171|ref|YP_513533.1| - 0.0081 16.7 0.4 0.013 16.0 0.4 1.7 1 1 0 1 1 1 1 ABC transporter AAA_PrkA PF08298.11 gi|89256171|ref|YP_513533.1| - 0.0082 15.1 0.0 0.014 14.3 0.0 1.3 1 0 0 1 1 1 1 PrkA AAA domain TsaE PF02367.17 gi|89256171|ref|YP_513533.1| - 0.0088 16.0 0.0 0.015 15.3 0.0 1.4 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE APS_kinase PF01583.20 gi|89256171|ref|YP_513533.1| - 0.011 15.7 0.1 0.052 13.4 0.0 2.0 2 1 0 2 2 2 0 Adenylylsulphate kinase AAA_7 PF12775.7 gi|89256171|ref|YP_513533.1| - 0.012 15.1 0.1 0.063 12.8 0.0 2.0 2 0 0 2 2 2 0 P-loop containing dynein motor region AAA_24 PF13479.6 gi|89256171|ref|YP_513533.1| - 0.014 15.2 0.1 0.014 15.2 0.1 1.4 1 1 0 1 1 1 0 AAA domain Guanylate_kin PF00625.21 gi|89256171|ref|YP_513533.1| - 0.016 14.9 0.2 0.17 11.6 0.0 2.0 2 0 0 2 2 2 0 Guanylate kinase Ploopntkinase3 PF18751.1 gi|89256171|ref|YP_513533.1| - 0.02 14.8 0.0 0.033 14.1 0.0 1.3 1 0 0 1 1 1 0 P-loop Nucleotide Kinase3 AAA_5 PF07728.14 gi|89256171|ref|YP_513533.1| - 0.021 14.9 0.0 0.057 13.4 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) ATPase_2 PF01637.18 gi|89256171|ref|YP_513533.1| - 0.022 14.7 0.2 0.048 13.6 0.2 1.5 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea RNA_helicase PF00910.22 gi|89256171|ref|YP_513533.1| - 0.03 14.7 0.0 0.053 13.9 0.0 1.4 1 0 0 1 1 1 0 RNA helicase Rad17 PF03215.15 gi|89256171|ref|YP_513533.1| - 0.033 14.1 0.0 0.053 13.5 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_29 PF13555.6 gi|89256171|ref|YP_513533.1| - 0.038 13.7 0.1 0.072 12.9 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_14 PF13173.6 gi|89256171|ref|YP_513533.1| - 0.047 13.7 0.1 0.12 12.4 0.0 1.8 1 1 1 2 2 2 0 AAA domain PduV-EutP PF10662.9 gi|89256171|ref|YP_513533.1| - 0.052 13.3 0.0 0.091 12.5 0.0 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation RsgA_GTPase PF03193.16 gi|89256171|ref|YP_513533.1| - 0.054 13.4 0.0 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase DHQ_synthase PF01761.20 gi|89256172|ref|YP_513534.1| - 7.7e-99 330.1 0.1 9.7e-99 329.8 0.1 1.1 1 0 0 1 1 1 1 3-dehydroquinate synthase Fe-ADH_2 PF13685.6 gi|89256172|ref|YP_513534.1| - 1.7e-10 41.0 0.6 7.3e-10 39.0 0.6 1.9 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 gi|89256172|ref|YP_513534.1| - 1.1e-07 31.0 0.2 5.1e-06 25.5 0.1 2.0 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase RPGR1_C PF18111.1 gi|89256172|ref|YP_513534.1| - 0.069 13.1 0.1 0.14 12.0 0.1 1.5 1 0 0 1 1 1 0 Retinitis pigmentosa G-protein regulator interacting C-terminal Lipoprotein_7 PF01540.16 gi|89256173|ref|YP_513535.1| - 0.00084 18.7 7.1 0.001 18.5 7.1 1.0 1 0 0 1 1 1 1 Adhesin lipoprotein RE_ApaLI PF09499.10 gi|89256173|ref|YP_513535.1| - 0.013 15.2 0.7 0.019 14.7 0.7 1.2 1 0 0 1 1 1 0 ApaLI-like restriction endonuclease SF-assemblin PF06705.11 gi|89256173|ref|YP_513535.1| - 0.015 14.7 6.5 0.017 14.5 6.5 1.2 1 0 0 1 1 1 0 SF-assemblin/beta giardin ApoLp-III PF07464.11 gi|89256173|ref|YP_513535.1| - 0.015 15.4 2.8 0.024 14.8 2.4 1.5 1 1 0 1 1 1 0 Apolipophorin-III precursor (apoLp-III) YtxH PF12732.7 gi|89256173|ref|YP_513535.1| - 0.023 15.2 2.0 0.033 14.7 1.4 1.7 1 1 0 1 1 1 0 YtxH-like protein Phasin PF05597.11 gi|89256173|ref|YP_513535.1| - 0.026 14.5 1.1 0.046 13.7 1.1 1.4 1 0 0 1 1 1 0 Poly(hydroxyalcanoate) granule associated protein (phasin) MIS13 PF08202.11 gi|89256173|ref|YP_513535.1| - 0.05 12.9 7.4 0.056 12.7 7.4 1.0 1 0 0 1 1 1 0 Mis12-Mtw1 protein family PKK PF12474.8 gi|89256173|ref|YP_513535.1| - 0.079 13.1 5.1 0.12 12.5 4.7 1.5 1 1 0 1 1 1 0 Polo kinase kinase DUF4253 PF14062.6 gi|89256173|ref|YP_513535.1| - 0.11 12.7 0.0 0.17 12.1 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4253) Mobilization_B PF17511.2 gi|89256173|ref|YP_513535.1| - 0.12 12.7 0.3 0.16 12.3 0.3 1.2 1 0 0 1 1 1 0 Mobilization protein B HR1 PF02185.16 gi|89256173|ref|YP_513535.1| - 0.54 10.4 10.1 4.6 7.4 0.3 2.8 1 1 1 2 2 2 0 Hr1 repeat Sdh5 PF03937.16 gi|89256174|ref|YP_513536.1| - 1.3e-16 60.3 0.1 1.9e-16 59.8 0.1 1.2 1 0 0 1 1 1 1 Flavinator of succinate dehydrogenase Aldedh PF00171.22 gi|89256175|ref|YP_513537.1| - 2.1e-156 521.1 8.4 3.6e-121 404.9 1.4 2.1 2 0 0 2 2 2 2 Aldehyde dehydrogenase family Pro_dh PF01619.18 gi|89256175|ref|YP_513537.1| - 1.7e-98 329.8 2.4 4.5e-98 328.4 2.4 1.8 1 0 0 1 1 1 1 Proline dehydrogenase Pro_dh-DNA_bdg PF14850.6 gi|89256175|ref|YP_513537.1| - 6.6e-44 149.0 0.0 2.7e-43 147.0 0.0 2.2 1 0 0 1 1 1 1 DNA-binding domain of Proline dehydrogenase PRODH PF18327.1 gi|89256175|ref|YP_513537.1| - 8.5e-09 35.5 0.0 2.5e-08 34.0 0.0 1.9 1 0 0 1 1 1 1 Proline utilization A proline dehydrogenase N-terminal domain AA_permease_2 PF13520.6 gi|89256176|ref|YP_513538.1| - 2.1e-28 99.4 66.8 5.5e-28 98.0 66.8 1.7 1 1 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|89256176|ref|YP_513538.1| - 1.8e-16 59.8 62.5 7.4e-16 57.8 62.5 2.2 1 1 0 1 1 1 1 Amino acid permease MFS_1 PF07690.16 gi|89256177|ref|YP_513539.1| - 6.9e-19 68.0 54.1 5.5e-14 51.9 20.8 2.0 1 1 0 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|89256177|ref|YP_513539.1| - 7.5e-11 41.5 17.1 7.5e-11 41.5 17.1 2.5 1 1 1 2 2 2 1 Sugar (and other) transporter Phage_holin_2_4 PF16082.5 gi|89256177|ref|YP_513539.1| - 0.22 11.3 3.6 2.1 8.1 0.2 2.7 2 0 0 2 2 2 0 Bacteriophage holin family, superfamily II-like DFP PF04127.15 gi|89256178|ref|YP_513540.1| - 7.8e-56 188.9 3.7 1.2e-55 188.2 3.7 1.3 1 0 0 1 1 1 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.19 gi|89256178|ref|YP_513540.1| - 1.7e-43 148.1 0.2 6e-43 146.3 0.0 2.0 2 1 0 2 2 2 1 Flavoprotein Epimerase PF01370.21 gi|89256178|ref|YP_513540.1| - 0.00016 21.2 0.4 0.0071 15.8 0.4 2.2 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 gi|89256178|ref|YP_513540.1| - 0.0071 16.2 0.1 0.016 15.1 0.1 1.7 1 1 0 1 1 1 1 NAD(P)H-binding ChaB PF06150.12 gi|89256179|ref|YP_513541.1| - 1.6e-22 79.9 3.9 1.8e-22 79.6 3.9 1.1 1 0 0 1 1 1 1 ChaB PRC PF05239.16 gi|89256180|ref|YP_513542.1| - 2.6e-17 62.7 0.1 3.4e-17 62.3 0.1 1.2 1 0 0 1 1 1 1 PRC-barrel domain LD_cluster2 PF18163.1 gi|89256180|ref|YP_513542.1| - 0.047 13.2 0.0 0.049 13.2 0.0 1.3 1 0 0 1 1 1 0 SLOG cluster2 MlaD PF02470.20 gi|89256180|ref|YP_513542.1| - 0.13 12.6 0.1 0.2 12.0 0.1 1.4 1 1 0 1 1 1 0 MlaD protein PRC PF05239.16 gi|89256181|ref|YP_513543.1| - 2e-19 69.4 0.3 2.3e-19 69.2 0.3 1.0 1 0 0 1 1 1 1 PRC-barrel domain MlaD PF02470.20 gi|89256181|ref|YP_513543.1| - 0.1 12.9 0.1 0.11 12.8 0.1 1.2 1 0 0 1 1 1 0 MlaD protein LD_cluster2 PF18163.1 gi|89256181|ref|YP_513543.1| - 0.17 11.4 0.1 0.19 11.2 0.1 1.0 1 0 0 1 1 1 0 SLOG cluster2 DUF883 PF05957.13 gi|89256182|ref|YP_513544.1| - 0.00079 20.0 2.1 0.0015 19.1 2.1 1.4 1 1 0 1 1 1 1 Bacterial protein of unknown function (DUF883) YtxH PF12732.7 gi|89256182|ref|YP_513544.1| - 0.28 11.7 5.9 0.66 10.6 5.9 1.7 1 1 0 1 1 1 0 YtxH-like protein DDE_Tnp_1_2 PF13586.6 gi|89256183|ref|YP_513545.1| - 1e-13 51.5 0.0 1.8e-13 50.7 0.0 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|89256183|ref|YP_513545.1| - 4.1e-12 46.2 2.0 3.8e-11 43.1 2.0 1.9 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 gi|89256183|ref|YP_513545.1| - 6.8e-08 32.7 0.0 9.5e-08 32.2 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.6 gi|89256183|ref|YP_513545.1| - 0.00017 21.3 0.2 0.00023 20.9 0.2 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease DUF4096 PF13340.6 gi|89256183|ref|YP_513545.1| - 0.0056 16.9 0.0 0.011 15.9 0.0 1.5 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) Ferrochelatase PF00762.19 gi|89256184|ref|YP_513546.1| - 1.2e-104 349.8 0.0 1.4e-104 349.7 0.0 1.0 1 0 0 1 1 1 1 Ferrochelatase CbiX PF01903.17 gi|89256184|ref|YP_513546.1| - 0.00019 21.7 0.0 0.0034 17.7 0.0 2.5 2 1 0 2 2 2 1 CbiX HCBP_related PF06594.11 gi|89256186|ref|YP_513548.1| - 0.098 12.6 0.5 0.19 11.7 0.5 1.5 1 0 0 1 1 1 0 Haemolysin-type calcium binding protein related domain SSV1_ORF_D-335 PF07935.11 gi|89256186|ref|YP_513548.1| - 0.55 10.6 4.3 0.5 10.7 3.4 1.5 1 1 0 1 1 1 0 ORF D-335-like protein T2SSF PF00482.23 gi|89256187|ref|YP_513549.1| - 1.2e-54 183.6 3.8 7.9e-27 93.7 0.1 2.2 2 0 0 2 2 2 2 Type II secretion system (T2SS), protein F DUF996 PF06195.13 gi|89256187|ref|YP_513549.1| - 9.2 6.6 11.6 1.5 9.1 1.9 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF996) T2SSE PF00437.20 gi|89256188|ref|YP_513550.1| - 1.9e-86 289.5 0.3 1.9e-86 289.5 0.3 1.5 2 0 0 2 2 2 1 Type II/IV secretion system protein T2SSE_N PF05157.15 gi|89256188|ref|YP_513550.1| - 9.6e-10 38.7 0.1 3e-09 37.1 0.1 1.8 1 0 0 1 1 1 1 Type II secretion system (T2SS), protein E, N-terminal domain AAA_22 PF13401.6 gi|89256188|ref|YP_513550.1| - 0.0056 17.0 0.0 0.026 14.8 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_11 PF13086.6 gi|89256188|ref|YP_513550.1| - 0.0062 16.4 0.1 0.015 15.1 0.1 1.7 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|89256188|ref|YP_513550.1| - 0.014 15.1 0.0 0.027 14.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain PhoH PF02562.16 gi|89256188|ref|YP_513550.1| - 0.019 14.4 0.1 0.048 13.1 0.1 1.6 1 0 0 1 1 1 0 PhoH-like protein AAA_19 PF13245.6 gi|89256188|ref|YP_513550.1| - 0.02 15.2 0.5 0.08 13.3 0.3 1.9 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|89256188|ref|YP_513550.1| - 0.025 14.3 0.1 0.074 12.8 0.0 1.8 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|89256188|ref|YP_513550.1| - 0.034 14.5 0.2 0.099 13.0 0.1 1.9 2 1 0 2 2 2 0 AAA ATPase domain AAA_7 PF12775.7 gi|89256188|ref|YP_513550.1| - 0.054 13.0 0.3 0.14 11.6 0.2 1.7 1 1 0 1 1 1 0 P-loop containing dynein motor region ResIII PF04851.15 gi|89256188|ref|YP_513550.1| - 0.062 13.3 1.4 0.14 12.1 0.0 2.3 3 0 0 3 3 3 0 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|89256188|ref|YP_513550.1| - 0.062 13.1 0.1 0.13 12.0 0.1 1.6 1 0 0 1 1 1 0 DEAD/DEAH box helicase AAA_23 PF13476.6 gi|89256188|ref|YP_513550.1| - 0.68 10.4 0.1 0.68 10.4 0.1 2.7 2 1 0 2 2 2 0 AAA domain GDPD PF03009.17 gi|89256189|ref|YP_513551.1| - 1e-30 107.4 0.7 1.1e-30 107.2 0.7 1.0 1 0 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family DUF4846 PF16138.5 gi|89256189|ref|YP_513551.1| - 0.059 12.9 5.0 0.14 11.7 0.0 2.1 1 1 1 2 2 2 0 Domain of unknown function (4846) MoCF_biosynth PF00994.24 gi|89256190|ref|YP_513552.1| - 4.4e-26 91.3 0.0 6.2e-26 90.8 0.0 1.2 1 0 0 1 1 1 1 Probable molybdopterin binding domain YrbL-PhoP_reg PF10707.9 gi|89256190|ref|YP_513552.1| - 0.03 13.8 0.0 0.051 13.1 0.0 1.3 1 0 0 1 1 1 0 PhoP regulatory network protein YrbL Mur_ligase_M PF08245.12 gi|89256191|ref|YP_513553.1| - 2.2e-21 76.7 1.4 2.2e-21 76.7 1.4 2.0 2 0 0 2 2 2 1 Mur ligase middle domain Mur_ligase_C PF02875.21 gi|89256191|ref|YP_513553.1| - 5.9e-09 36.1 0.0 6.5e-08 32.7 0.0 2.6 2 0 0 2 2 2 1 Mur ligase family, glutamate ligase domain RimK PF08443.11 gi|89256191|ref|YP_513553.1| - 3.2e-08 33.4 0.0 0.00073 19.2 0.0 2.6 2 0 0 2 2 2 2 RimK-like ATP-grasp domain CPSase_L_D2 PF02786.17 gi|89256191|ref|YP_513553.1| - 3.6e-06 26.6 0.0 8.8e-06 25.4 0.0 1.7 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_5 PF13549.6 gi|89256191|ref|YP_513553.1| - 5.3e-05 22.8 0.1 0.00021 20.8 0.0 2.0 2 0 0 2 2 2 1 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|89256191|ref|YP_513553.1| - 5.4e-05 22.8 1.9 0.0019 17.8 0.0 3.7 4 0 0 4 4 4 1 D-ala D-ala ligase C-terminus GSH-S_ATP PF02955.16 gi|89256191|ref|YP_513553.1| - 0.00032 20.2 0.1 0.00091 18.7 0.1 1.7 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp PF02222.22 gi|89256191|ref|YP_513553.1| - 0.0013 18.4 0.0 0.003 17.1 0.0 1.6 1 0 0 1 1 1 1 ATP-grasp domain MoCF_biosynth PF00994.24 gi|89256191|ref|YP_513553.1| - 0.0071 16.0 0.4 0.084 12.5 0.1 2.6 2 0 0 2 2 2 1 Probable molybdopterin binding domain ATPgrasp_ST PF14397.6 gi|89256191|ref|YP_513553.1| - 0.016 14.5 0.0 0.056 12.7 0.0 1.9 2 0 0 2 2 2 0 Sugar-transfer associated ATP-grasp DUF1910 PF08928.10 gi|89256191|ref|YP_513553.1| - 0.49 10.4 0.0 0.49 10.4 0.0 2.2 3 0 0 3 3 3 0 Domain of unknown function (DUF1910) Mur_ligase_M PF08245.12 gi|89256192|ref|YP_513554.1| - 2e-23 83.4 0.3 3.4e-23 82.6 0.3 1.4 1 0 0 1 1 1 1 Mur ligase middle domain Mur_ligase_C PF02875.21 gi|89256192|ref|YP_513554.1| - 5.5e-07 29.7 0.1 2.2e-06 27.8 0.0 2.0 2 0 0 2 2 2 1 Mur ligase family, glutamate ligase domain YgbB PF02542.16 gi|89256193|ref|YP_513555.1| - 4.2e-65 218.8 0.8 4.7e-65 218.6 0.8 1.0 1 0 0 1 1 1 1 YgbB family Rhodanese PF00581.20 gi|89256194|ref|YP_513556.1| - 7.6e-35 119.7 0.2 3.3e-16 59.7 0.0 2.2 2 0 0 2 2 2 2 Rhodanese-like domain RlmM_FDX PF18125.1 gi|89256194|ref|YP_513556.1| - 0.046 14.2 0.6 1.5 9.3 0.0 3.0 2 1 1 3 3 3 0 RlmM ferredoxin-like domain DUF2341 PF10102.9 gi|89256194|ref|YP_513556.1| - 0.055 14.1 0.0 0.36 11.4 0.0 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF2341) Trp_Tyr_perm PF03222.13 gi|89256195|ref|YP_513557.1| - 2.3e-29 102.7 22.7 2.8e-29 102.4 22.7 1.1 1 0 0 1 1 1 1 Tryptophan/tyrosine permease family Trp_Tyr_perm PF03222.13 gi|89256196|ref|YP_513558.1| - 2.6e-15 56.4 7.0 2.8e-15 56.2 7.0 1.0 1 0 0 1 1 1 1 Tryptophan/tyrosine permease family Aa_trans PF01490.18 gi|89256196|ref|YP_513558.1| - 0.0046 15.7 10.8 0.0055 15.5 10.8 1.0 1 0 0 1 1 1 1 Transmembrane amino acid transporter protein Lipoprotein_9 PF03180.14 gi|89256197|ref|YP_513559.1| - 8.1e-81 270.6 2.2 1.1e-80 270.1 2.2 1.2 1 0 0 1 1 1 1 NLPA lipoprotein BPD_transp_1 PF00528.22 gi|89256197|ref|YP_513559.1| - 4.7e-19 68.8 16.0 4.7e-19 68.8 16.0 2.3 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ATP-synt_8 PF00895.20 gi|89256197|ref|YP_513559.1| - 5.8 7.5 11.3 0.27 11.7 0.4 3.3 2 1 1 3 3 3 0 ATP synthase protein 8 ABC_tran PF00005.27 gi|89256198|ref|YP_513560.1| - 2.1e-34 118.9 0.3 6.3e-34 117.4 0.1 1.8 2 0 0 2 2 2 1 ABC transporter NIL PF09383.10 gi|89256198|ref|YP_513560.1| - 3.4e-16 58.9 0.1 9.2e-16 57.5 0.1 1.8 2 0 0 2 2 2 1 NIL domain SMC_N PF02463.19 gi|89256198|ref|YP_513560.1| - 3.2e-09 36.6 0.6 6.7e-09 35.5 0.6 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|89256198|ref|YP_513560.1| - 1.3e-07 31.7 1.5 0.011 15.6 0.1 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|89256198|ref|YP_513560.1| - 1.7e-05 25.1 0.1 0.00029 21.1 0.1 2.3 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|89256198|ref|YP_513560.1| - 0.00022 21.7 0.3 0.00071 20.0 0.3 1.8 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|89256198|ref|YP_513560.1| - 0.0018 18.2 0.1 0.0039 17.1 0.1 1.6 1 0 0 1 1 1 1 RsgA GTPase TniB PF05621.11 gi|89256198|ref|YP_513560.1| - 0.0038 16.7 1.2 0.019 14.3 0.2 2.5 3 0 0 3 3 3 1 Bacterial TniB protein AAA_15 PF13175.6 gi|89256198|ref|YP_513560.1| - 0.0041 16.9 0.0 0.0061 16.3 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|89256198|ref|YP_513560.1| - 0.0082 15.9 0.0 0.018 14.7 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|89256198|ref|YP_513560.1| - 0.013 16.1 5.7 0.026 15.0 3.5 2.6 2 1 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|89256198|ref|YP_513560.1| - 0.041 14.0 0.5 0.16 12.0 0.3 2.4 2 1 0 2 2 2 0 50S ribosome-binding GTPase Synapsin PF02078.16 gi|89256198|ref|YP_513560.1| - 0.11 12.8 0.0 0.28 11.5 0.0 1.7 1 0 0 1 1 1 0 Synapsin, N-terminal domain SbcCD_C PF13558.6 gi|89256198|ref|YP_513560.1| - 0.11 12.7 0.1 2.5 8.4 0.1 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit G3P_acyltransf PF02660.15 gi|89256199|ref|YP_513561.1| - 5.6e-49 166.3 18.3 6.5e-49 166.1 18.3 1.0 1 0 0 1 1 1 1 Glycerol-3-phosphate acyltransferase DUF1418 PF07214.12 gi|89256199|ref|YP_513561.1| - 0.54 10.2 2.9 5.2 7.0 0.2 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF1418) DUF3281 PF11685.8 gi|89256200|ref|YP_513562.1| - 1.6e-35 122.7 0.4 1.9e-35 122.5 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3281) DUF3281 PF11685.8 gi|89256201|ref|YP_513563.1| - 5.8e-40 137.3 4.7 6.9e-40 137.1 4.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3281) Big_9 PF17963.1 gi|89256201|ref|YP_513563.1| - 0.33 11.7 7.1 2.9 8.7 7.1 2.2 1 1 0 1 1 1 0 Bacterial Ig domain TGT PF01702.18 gi|89256203|ref|YP_513565.1| - 6.6e-156 518.8 0.0 8e-156 518.6 0.0 1.0 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase HTH_1 PF00126.27 gi|89256204|ref|YP_513566.1| - 1.9e-12 46.9 0.0 2.7e-12 46.4 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family LysR_substrate PF03466.20 gi|89256204|ref|YP_513566.1| - 0.0035 16.7 0.0 0.0044 16.4 0.0 1.1 1 0 0 1 1 1 1 LysR substrate binding domain MazG-like PF12643.7 gi|89256204|ref|YP_513566.1| - 0.014 15.6 0.4 0.034 14.4 0.3 1.9 1 1 0 1 1 1 0 MazG-like family EamA PF00892.20 gi|89256205|ref|YP_513567.1| - 3.6e-11 43.4 45.8 1.1e-06 28.8 25.8 2.1 2 0 0 2 2 2 2 EamA-like transporter family Isochorismatase PF00857.20 gi|89256206|ref|YP_513568.1| - 8.9e-39 133.5 1.2 1e-38 133.3 1.2 1.0 1 0 0 1 1 1 1 Isochorismatase family YajC PF02699.15 gi|89256207|ref|YP_513569.1| - 3.2e-31 107.0 0.5 4.5e-31 106.6 0.5 1.2 1 0 0 1 1 1 1 Preprotein translocase subunit DUF4131 PF13567.6 gi|89256207|ref|YP_513569.1| - 0.0042 16.7 0.0 0.0051 16.5 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4131) Orf78 PF06024.12 gi|89256207|ref|YP_513569.1| - 0.0073 16.6 0.0 0.014 15.7 0.0 1.4 1 0 0 1 1 1 1 Orf78 (ac78) DUF2208 PF09973.9 gi|89256207|ref|YP_513569.1| - 0.089 12.4 0.1 0.11 12.2 0.1 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2208) T2SSM PF04612.12 gi|89256207|ref|YP_513569.1| - 0.12 12.4 0.0 0.21 11.6 0.0 1.4 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein M SecD-TM1 PF13721.6 gi|89256208|ref|YP_513570.1| - 6.6e-29 100.4 0.6 6.6e-29 100.4 0.6 3.1 4 0 0 4 4 4 1 SecD export protein N-terminal TM region SecD_SecF PF02355.16 gi|89256208|ref|YP_513570.1| - 1.5e-23 83.2 16.4 3.4e-23 82.0 16.4 1.6 1 0 0 1 1 1 1 Protein export membrane protein MMPL PF03176.15 gi|89256208|ref|YP_513570.1| - 3e-09 36.3 16.9 7.5e-09 35.0 16.9 1.6 1 0 0 1 1 1 1 MMPL family Sec_GG PF07549.14 gi|89256208|ref|YP_513570.1| - 9.7e-06 24.9 0.0 2.6e-05 23.5 0.0 1.8 1 0 0 1 1 1 1 SecD/SecF GG Motif DC_STAMP PF07782.13 gi|89256208|ref|YP_513570.1| - 0.13 12.0 0.6 0.33 10.7 0.6 1.7 1 0 0 1 1 1 0 DC-STAMP-like protein SecD_SecF PF02355.16 gi|89256209|ref|YP_513571.1| - 8.8e-66 220.9 12.5 8.8e-66 220.9 12.5 1.9 2 0 0 2 2 2 1 Protein export membrane protein Sec_GG PF07549.14 gi|89256209|ref|YP_513571.1| - 8.6e-11 41.0 1.5 2.6e-10 39.4 1.5 1.9 1 0 0 1 1 1 1 SecD/SecF GG Motif CPP1-like PF11833.8 gi|89256209|ref|YP_513571.1| - 1.7 8.3 6.1 1.3 8.6 0.1 2.5 2 1 1 3 3 3 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like SH3_4 PF06347.13 gi|89256210|ref|YP_513572.1| - 0.0023 17.7 0.4 0.0044 16.8 0.4 1.4 1 0 0 1 1 1 1 Bacterial SH3 domain Med4 PF10018.9 gi|89256210|ref|YP_513572.1| - 0.013 15.2 6.9 0.021 14.5 6.9 1.3 1 0 0 1 1 1 0 Vitamin-D-receptor interacting Mediator subunit 4 SH3_1 PF00018.28 gi|89256210|ref|YP_513572.1| - 0.038 13.6 0.2 0.071 12.7 0.2 1.4 1 0 0 1 1 1 0 SH3 domain EMP24_GP25L PF01105.24 gi|89256210|ref|YP_513572.1| - 0.04 13.9 5.2 0.053 13.5 5.2 1.1 1 0 0 1 1 1 0 emp24/gp25L/p24 family/GOLD SH3_3 PF08239.11 gi|89256210|ref|YP_513572.1| - 0.068 13.5 0.1 0.11 12.8 0.1 1.4 1 0 0 1 1 1 0 Bacterial SH3 domain GW PF13457.6 gi|89256210|ref|YP_513572.1| - 0.25 12.0 0.2 0.25 12.0 0.2 2.6 2 1 0 2 2 2 0 GW (Gly-Tryp) dipeptide domain NYD-SP28 PF14772.6 gi|89256210|ref|YP_513572.1| - 1.3 9.1 10.4 0.57 10.3 3.2 2.3 1 1 0 2 2 2 0 Sperm tail SlyX PF04102.12 gi|89256210|ref|YP_513572.1| - 1.5 9.5 9.6 5.1 7.8 9.6 2.0 1 1 0 1 1 1 0 SlyX Sigma70_r2 PF04542.14 gi|89256211|ref|YP_513573.1| - 2.3e-18 65.7 0.0 8.4e-18 63.9 0.0 1.9 2 0 0 2 2 2 1 Sigma-70 region 2 Sigma70_r4 PF04545.16 gi|89256211|ref|YP_513573.1| - 2.3e-16 59.0 0.3 1.2e-12 47.1 0.0 2.8 2 0 0 2 2 2 2 Sigma-70, region 4 HTH_25 PF13413.6 gi|89256211|ref|YP_513573.1| - 0.0003 20.6 1.5 0.005 16.7 0.2 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|89256211|ref|YP_513573.1| - 0.0021 18.1 0.3 2.3 8.3 0.1 2.6 2 0 0 2 2 2 2 Helix-turn-helix Sigma70_r1_2 PF00140.20 gi|89256211|ref|YP_513573.1| - 0.0021 18.0 1.3 0.0041 17.1 0.1 2.2 2 0 0 2 2 2 1 Sigma-70 factor, region 1.2 HTH_Tnp_ISL3 PF13542.6 gi|89256211|ref|YP_513573.1| - 0.0024 17.2 0.0 2.7 7.5 0.0 2.5 2 0 0 2 2 2 2 Helix-turn-helix domain of transposase family ISL3 HTH_10 PF04967.12 gi|89256211|ref|YP_513573.1| - 0.0027 17.5 0.6 1.7 8.5 0.0 2.9 2 0 0 2 2 2 2 HTH DNA binding domain HTH_23 PF13384.6 gi|89256211|ref|YP_513573.1| - 0.0035 17.1 0.0 3.7 7.5 0.0 2.6 2 0 0 2 2 2 2 Homeodomain-like domain Sigma70_r3 PF04539.16 gi|89256211|ref|YP_513573.1| - 0.0052 16.9 0.8 2.7 8.2 0.0 2.7 2 0 0 2 2 2 2 Sigma-70 region 3 HTH_AsnC-type PF13404.6 gi|89256211|ref|YP_513573.1| - 0.012 15.4 0.0 1.6 8.6 0.0 2.5 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain YdaS_antitoxin PF15943.5 gi|89256211|ref|YP_513573.1| - 0.014 15.2 0.0 1.7 8.5 0.0 2.4 2 0 0 2 2 2 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_28 PF13518.6 gi|89256211|ref|YP_513573.1| - 0.016 15.3 0.0 6.7 6.9 0.0 2.6 2 0 0 2 2 2 0 Helix-turn-helix domain IF2_N PF04760.15 gi|89256211|ref|YP_513573.1| - 0.062 13.1 5.7 0.38 10.6 0.8 3.2 3 1 1 4 4 4 0 Translation initiation factor IF-2, N-terminal region SpoIIID PF12116.8 gi|89256211|ref|YP_513573.1| - 0.078 13.1 0.6 0.32 11.1 0.2 2.2 2 0 0 2 2 2 0 Stage III sporulation protein D Homeodomain PF00046.29 gi|89256211|ref|YP_513573.1| - 0.081 12.8 1.1 8 6.4 0.0 3.2 3 0 0 3 3 3 0 Homeodomain GntR PF00392.21 gi|89256211|ref|YP_513573.1| - 0.087 12.5 0.2 16 5.3 0.0 2.6 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family EPSP_synthase PF00275.20 gi|89256212|ref|YP_513574.1| - 6.1e-106 354.6 0.0 6.9e-106 354.4 0.0 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Glyco_hydro_76 PF03663.14 gi|89256212|ref|YP_513574.1| - 0.055 13.0 0.1 1.1 8.6 0.2 2.2 1 1 1 2 2 2 0 Glycosyl hydrolase family 76 Methyltransf_23 PF13489.6 gi|89256213|ref|YP_513575.1| - 0.0025 17.7 0.0 0.0032 17.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|89256213|ref|YP_513575.1| - 0.0076 16.9 0.0 0.06 14.1 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|89256213|ref|YP_513575.1| - 0.027 15.1 0.0 0.046 14.4 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain RNase_H PF00075.24 gi|89256214|ref|YP_513576.1| - 2.5e-51 173.6 2.0 3e-51 173.4 2.0 1.0 1 0 0 1 1 1 1 RNase H Hormone_1 PF00103.20 gi|89256214|ref|YP_513576.1| - 0.31 10.8 2.8 1.7 8.3 1.7 1.9 1 1 1 2 2 2 0 Somatotropin hormone family Asparaginase PF00710.20 gi|89256215|ref|YP_513577.1| - 5.2e-66 221.8 0.0 8.3e-66 221.2 0.0 1.3 1 0 0 1 1 1 1 Asparaginase, N-terminal Asparaginase_C PF17763.1 gi|89256215|ref|YP_513577.1| - 1.8e-26 92.6 0.0 2.9e-26 91.9 0.0 1.4 1 0 0 1 1 1 1 Glutaminase/Asparaginase C-terminal domain zf-DNL PF05180.12 gi|89256215|ref|YP_513577.1| - 0.02 14.8 0.0 0.04 13.8 0.0 1.5 1 0 0 1 1 1 0 DNL zinc finger Pro_CA PF00484.19 gi|89256216|ref|YP_513578.1| - 6e-45 153.3 0.8 7.5e-45 153.0 0.8 1.1 1 0 0 1 1 1 1 Carbonic anhydrase T3RM_EcoP15I_C PF18273.1 gi|89256218|ref|YP_513580.1| - 0.028 14.7 1.2 0.61 10.4 0.1 2.9 2 1 1 3 3 3 0 Type III R-M EcoP15I C-terminal domain Rubredoxin PF00301.20 gi|89256219|ref|YP_513581.1| - 3.4e-23 81.4 4.6 4e-23 81.2 4.6 1.1 1 0 0 1 1 1 1 Rubredoxin zf-Sec23_Sec24 PF04810.15 gi|89256219|ref|YP_513581.1| - 0.058 13.5 0.5 3.8 7.6 0.1 2.1 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger zinc_ribbon_10 PF10058.9 gi|89256219|ref|YP_513581.1| - 0.062 13.0 0.4 11 5.8 0.1 2.1 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein A2L_zn_ribbon PF08792.10 gi|89256219|ref|YP_513581.1| - 0.072 12.8 2.0 2.1 8.1 0.1 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-Mss51 PF13824.6 gi|89256219|ref|YP_513581.1| - 0.085 13.0 2.6 0.66 10.1 0.4 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 PHD_4 PF16866.5 gi|89256219|ref|YP_513581.1| - 0.085 13.0 7.2 1.3 9.2 7.6 2.0 1 1 1 2 2 2 0 PHD-finger OrfB_Zn_ribbon PF07282.11 gi|89256219|ref|YP_513581.1| - 0.14 12.1 0.0 3.4 7.7 0.0 2.0 2 0 0 2 2 2 0 Putative transposase DNA-binding domain zf-C2H2_3 PF13878.6 gi|89256219|ref|YP_513581.1| - 0.23 11.3 0.3 7.8 6.4 0.0 2.2 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO TF_Zn_Ribbon PF08271.12 gi|89256219|ref|YP_513581.1| - 0.3 10.6 5.3 6.3 6.4 0.2 2.6 2 1 0 2 2 2 0 TFIIB zinc-binding PIN7 PF18475.1 gi|89256220|ref|YP_513582.1| - 0.00032 21.3 0.5 0.00032 21.3 0.5 2.2 3 0 0 3 3 3 1 PIN domain GCS PF03074.16 gi|89256220|ref|YP_513582.1| - 0.045 13.1 1.1 0.077 12.4 0.1 1.7 2 0 0 2 2 2 0 Glutamate-cysteine ligase DDE_Tnp_1_2 PF13586.6 gi|89256221|ref|YP_513583.1| - 1e-13 51.4 0.0 1.9e-13 50.6 0.0 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|89256221|ref|YP_513583.1| - 4.3e-12 46.1 2.0 3.9e-11 43.0 2.0 1.9 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 gi|89256221|ref|YP_513583.1| - 7e-08 32.6 0.0 9.9e-08 32.1 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.6 gi|89256221|ref|YP_513583.1| - 0.00018 21.2 0.2 0.00024 20.8 0.2 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease DUF4096 PF13340.6 gi|89256221|ref|YP_513583.1| - 0.0057 16.8 0.0 0.011 15.9 0.0 1.5 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) UPF0061 PF02696.14 gi|89256222|ref|YP_513584.1| - 6.5e-101 338.4 5.6 6e-100 335.2 5.6 1.9 1 1 0 1 1 1 1 Uncharacterized ACR, YdiU/UPF0061 family SDF PF00375.18 gi|89256223|ref|YP_513585.1| - 7.1e-100 334.7 47.9 8.4e-100 334.5 47.9 1.0 1 0 0 1 1 1 1 Sodium:dicarboxylate symporter family SIS PF01380.22 gi|89256224|ref|YP_513586.1| - 4.4e-32 110.7 1.0 4.6e-19 68.6 0.2 2.2 2 0 0 2 2 2 2 SIS domain U3snoRNP10 PF12397.8 gi|89256224|ref|YP_513586.1| - 0.11 12.9 1.5 1.8 8.9 0.1 2.5 2 0 0 2 2 2 0 U3 small nucleolar RNA-associated protein 10 Sugar_tr PF00083.24 gi|89256225|ref|YP_513587.1| - 1e-84 285.0 38.2 1.2e-84 284.8 38.2 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|89256225|ref|YP_513587.1| - 3.7e-32 111.6 40.2 3.7e-32 111.6 40.2 1.6 1 1 1 2 2 2 1 Major Facilitator Superfamily DDE_Tnp_IS1 PF03400.13 gi|89256226|ref|YP_513588.1| - 2.7e-16 60.1 1.7 2.9e-16 60.0 1.7 1.0 1 0 0 1 1 1 1 IS1 transposase CDT1 PF08839.11 gi|89256226|ref|YP_513588.1| - 0.073 13.4 0.0 0.085 13.1 0.0 1.1 1 0 0 1 1 1 0 DNA replication factor CDT1 like DUF3573 PF12097.8 gi|89256227|ref|YP_513589.1| - 7.9e-188 624.0 22.3 1.1e-187 623.6 22.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3573) TcpS PF17456.2 gi|89256227|ref|YP_513589.1| - 0.0098 15.9 1.2 0.0098 15.9 1.2 1.8 2 0 0 2 2 2 1 Toxin-coregulated pilus protein S DUF1192 PF06698.11 gi|89256227|ref|YP_513589.1| - 0.12 12.4 0.6 0.23 11.6 0.6 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1192) DUF272 PF03312.15 gi|89256227|ref|YP_513589.1| - 0.18 12.0 2.2 0.47 10.7 2.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF272) DDE_Tnp_1_2 PF13586.6 gi|89256228|ref|YP_513590.1| - 1.1e-13 51.4 0.0 1.9e-13 50.6 0.0 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|89256228|ref|YP_513590.1| - 4.4e-12 46.1 2.0 4e-11 43.0 2.0 1.9 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 gi|89256228|ref|YP_513590.1| - 7.1e-08 32.6 0.0 1e-07 32.1 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.6 gi|89256228|ref|YP_513590.1| - 0.00018 21.2 0.2 0.00024 20.8 0.2 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease DUF4096 PF13340.6 gi|89256228|ref|YP_513590.1| - 0.0058 16.8 0.0 0.011 15.9 0.0 1.5 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) Glyco_hydro_20 PF00728.22 gi|89256229|ref|YP_513591.1| - 0.0014 18.1 0.2 0.0014 18.1 0.2 1.0 1 0 0 1 1 1 1 Glycosyl hydrolase family 20, catalytic domain Na_H_Exchanger PF00999.21 gi|89256231|ref|YP_513593.1| - 0.00058 18.8 0.8 0.00058 18.8 0.8 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Urate_ox_N PF06181.11 gi|89256231|ref|YP_513593.1| - 0.0083 15.5 0.6 0.0096 15.3 0.6 1.0 1 0 0 1 1 1 1 Urate oxidase N-terminal Na_H_Exchanger PF00999.21 gi|89256232|ref|YP_513594.1| - 1.3e-20 73.5 8.7 2.6e-18 66.0 2.3 2.0 1 1 1 2 2 2 2 Sodium/hydrogen exchanger family GcpE PF04551.14 gi|89256233|ref|YP_513595.1| - 2.5e-118 395.2 0.8 2.9e-118 395.0 0.8 1.0 1 0 0 1 1 1 1 GcpE protein WYL_3 PF18488.1 gi|89256233|ref|YP_513595.1| - 0.21 12.0 0.6 14 6.1 0.1 2.5 2 0 0 2 2 2 0 WYL domain Cu-oxidase_4 PF02578.15 gi|89256234|ref|YP_513596.1| - 3.6e-61 206.7 0.0 4.2e-61 206.5 0.0 1.0 1 0 0 1 1 1 1 Multi-copper polyphenol oxidoreductase laccase PRKCSH-like PF12999.7 gi|89256234|ref|YP_513596.1| - 0.036 13.9 0.2 0.079 12.8 0.2 1.6 1 0 0 1 1 1 0 Glucosidase II beta subunit-like Peptidase_M24 PF00557.24 gi|89256235|ref|YP_513597.1| - 5e-44 150.5 0.0 8.2e-44 149.8 0.0 1.4 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N_2 PF16189.5 gi|89256235|ref|YP_513597.1| - 5e-41 140.5 1.1 1.4e-39 135.8 0.1 2.9 3 0 0 3 3 3 1 Creatinase/Prolidase N-terminal domain Creatinase_N PF01321.18 gi|89256235|ref|YP_513597.1| - 1.6e-15 57.9 0.2 6.1e-13 49.6 0.0 2.4 2 0 0 2 2 2 2 Creatinase/Prolidase N-terminal domain Peptidase_M24_C PF16188.5 gi|89256235|ref|YP_513597.1| - 1.3e-13 50.7 3.0 2.7e-13 49.7 0.7 2.4 2 0 0 2 2 2 1 C-terminal region of peptidase_M24 PAS_11 PF14598.6 gi|89256235|ref|YP_513597.1| - 0.051 13.7 0.2 10 6.3 0.1 2.5 2 0 0 2 2 2 0 PAS domain Fibrinogen_C PF00147.18 gi|89256235|ref|YP_513597.1| - 0.057 13.2 0.1 0.15 11.8 0.1 1.7 1 0 0 1 1 1 0 Fibrinogen beta and gamma chains, C-terminal globular domain Endonuclease_NS PF01223.23 gi|89256236|ref|YP_513598.1| - 1.4e-52 178.8 0.6 2.1e-52 178.2 0.6 1.2 1 0 0 1 1 1 1 DNA/RNA non-specific endonuclease Endonuclea_NS_2 PF13930.6 gi|89256236|ref|YP_513598.1| - 0.024 14.7 0.1 0.087 12.9 0.1 1.9 1 1 0 1 1 1 0 DNA/RNA non-specific endonuclease Beta-lactamase2 PF13354.6 gi|89256237|ref|YP_513599.1| - 7.2e-36 123.7 0.0 8.8e-36 123.4 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase enzyme family Beta-lactamase PF00144.24 gi|89256237|ref|YP_513599.1| - 1.1e-05 24.9 0.0 0.028 13.7 0.0 2.1 2 0 0 2 2 2 2 Beta-lactamase Ank_2 PF12796.7 gi|89256238|ref|YP_513600.1| - 0.0082 16.7 0.2 0.033 14.8 0.1 2.1 2 0 0 2 2 2 1 Ankyrin repeats (3 copies) CsgA PF17334.2 gi|89256238|ref|YP_513600.1| - 0.031 15.0 1.3 0.12 13.2 0.6 2.3 2 0 0 2 2 2 0 Minor curli fiber component A AAA_lid_7 PF17867.1 gi|89256238|ref|YP_513600.1| - 0.075 13.2 0.0 0.14 12.4 0.0 1.5 1 0 0 1 1 1 0 Midasin AAA lid domain VirK PF06903.12 gi|89256239|ref|YP_513601.1| - 8.7e-11 41.8 0.0 1.2e-10 41.3 0.0 1.2 1 0 0 1 1 1 1 VirK protein Internalin_N PF12354.8 gi|89256239|ref|YP_513601.1| - 0.079 13.0 1.0 0.21 11.7 0.3 1.9 2 0 0 2 2 2 0 Bacterial adhesion/invasion protein N terminal CN_hydrolase PF00795.22 gi|89256240|ref|YP_513602.1| - 2.7e-31 108.9 0.0 4e-31 108.3 0.0 1.2 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase Phage_holin_3_3 PF16083.5 gi|89256240|ref|YP_513602.1| - 2 8.6 9.0 0.15 12.2 1.1 2.8 2 1 0 2 2 2 0 LydA holin phage, holin superfamily III DUF4131 PF13567.6 gi|89256240|ref|YP_513602.1| - 5 6.7 8.2 2.4 7.8 0.1 2.8 2 1 0 2 2 2 0 Domain of unknown function (DUF4131) CorC_HlyC PF03471.17 gi|89256241|ref|YP_513603.1| - 2.4e-22 78.7 1.3 6.2e-22 77.4 0.2 2.1 2 0 0 2 2 2 1 Transporter associated domain CBS PF00571.28 gi|89256241|ref|YP_513603.1| - 8.7e-16 58.1 3.7 6e-08 33.0 0.2 3.2 3 0 0 3 3 3 2 CBS domain Lum_binding PF00677.17 gi|89256241|ref|YP_513603.1| - 0.038 14.0 0.1 0.11 12.4 0.1 1.9 1 1 0 1 1 1 0 Lumazine binding domain UPF0054 PF02130.17 gi|89256242|ref|YP_513604.1| - 1.3e-37 128.5 2.2 1.4e-37 128.4 1.6 1.3 1 1 0 1 1 1 1 Uncharacterized protein family UPF0054 Iron_permease PF04120.12 gi|89256242|ref|YP_513604.1| - 0.017 14.9 0.3 0.03 14.1 0.3 1.5 1 0 0 1 1 1 0 Low affinity iron permease PhoH PF02562.16 gi|89256243|ref|YP_513605.1| - 2e-90 301.7 0.2 3e-90 301.2 0.2 1.2 1 0 0 1 1 1 1 PhoH-like protein AAA_30 PF13604.6 gi|89256243|ref|YP_513605.1| - 5e-09 36.1 0.0 1.3e-08 34.9 0.0 1.5 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|89256243|ref|YP_513605.1| - 1.5e-05 24.8 0.0 3.1e-05 23.8 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_19 PF13245.6 gi|89256243|ref|YP_513605.1| - 4.8e-05 23.7 1.3 0.00011 22.6 0.2 2.1 1 1 1 2 2 2 1 AAA domain ResIII PF04851.15 gi|89256243|ref|YP_513605.1| - 0.0011 19.0 0.2 0.0044 17.0 0.1 1.9 1 1 1 2 2 2 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|89256243|ref|YP_513605.1| - 0.026 14.3 0.1 0.74 9.6 0.0 2.4 2 0 0 2 2 2 0 DEAD/DEAH box helicase AAA_25 PF13481.6 gi|89256243|ref|YP_513605.1| - 0.062 12.9 0.0 0.12 11.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|89256243|ref|YP_513605.1| - 0.13 12.6 1.0 0.79 10.0 0.2 2.4 2 1 0 2 2 2 0 AAA domain UPF0004 PF00919.20 gi|89256244|ref|YP_513606.1| - 1.5e-28 98.7 0.1 3.1e-28 97.7 0.1 1.6 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 Radical_SAM PF04055.21 gi|89256244|ref|YP_513606.1| - 4e-28 98.9 0.0 6.6e-28 98.2 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily TRAM PF01938.20 gi|89256244|ref|YP_513606.1| - 2.1e-17 62.9 0.1 3.9e-17 62.0 0.1 1.5 1 0 0 1 1 1 1 TRAM domain TRAM_2 PF18693.1 gi|89256244|ref|YP_513606.1| - 0.00023 21.3 0.0 0.00097 19.3 0.0 2.1 1 1 0 1 1 1 1 TRAM domain Fer4_12 PF13353.6 gi|89256244|ref|YP_513606.1| - 0.069 13.4 0.0 0.28 11.5 0.0 2.1 2 0 0 2 2 2 0 4Fe-4S single cluster domain B12-binding PF02310.19 gi|89256244|ref|YP_513606.1| - 0.13 12.3 0.0 0.65 10.0 0.0 2.1 3 0 0 3 3 3 0 B12 binding domain Methyltransf_3 PF01596.17 gi|89256245|ref|YP_513607.1| - 3e-29 101.7 0.5 4e-29 101.3 0.5 1.2 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_24 PF13578.6 gi|89256245|ref|YP_513607.1| - 1.8e-11 45.0 0.0 4.5e-11 43.7 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_4 PF02390.17 gi|89256245|ref|YP_513607.1| - 7.3e-06 25.5 0.2 1.8e-05 24.3 0.0 1.6 2 0 0 2 2 2 1 Putative methyltransferase Methyltransf_25 PF13649.6 gi|89256245|ref|YP_513607.1| - 0.00034 21.3 0.0 0.00077 20.1 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|89256245|ref|YP_513607.1| - 0.0052 17.4 0.0 0.012 16.3 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain TylF PF05711.11 gi|89256245|ref|YP_513607.1| - 0.011 15.1 0.1 0.015 14.6 0.1 1.4 1 0 0 1 1 1 0 Macrocin-O-methyltransferase (TylF) GidB PF02527.15 gi|89256245|ref|YP_513607.1| - 0.036 13.4 0.0 0.087 12.1 0.0 1.6 1 1 0 1 1 1 0 rRNA small subunit methyltransferase G Acid_phosphat_B PF03767.14 gi|89256246|ref|YP_513608.1| - 0.00062 19.4 0.1 0.00065 19.3 0.1 1.0 1 0 0 1 1 1 1 HAD superfamily, subfamily IIIB (Acid phosphatase) TK PF00265.18 gi|89256247|ref|YP_513609.1| - 2.3e-44 151.3 0.2 2.8e-44 151.1 0.2 1.1 1 0 0 1 1 1 1 Thymidine kinase FAD_binding_4 PF01565.23 gi|89256247|ref|YP_513609.1| - 0.016 14.9 0.0 0.023 14.4 0.0 1.3 1 0 0 1 1 1 0 FAD binding domain AAA_22 PF13401.6 gi|89256247|ref|YP_513609.1| - 0.022 15.0 0.0 0.031 14.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain ResIII PF04851.15 gi|89256247|ref|YP_513609.1| - 0.056 13.4 0.2 0.23 11.5 0.1 1.9 1 1 1 2 2 2 0 Type III restriction enzyme, res subunit AAA_30 PF13604.6 gi|89256247|ref|YP_513609.1| - 0.07 12.9 0.0 0.14 11.9 0.0 1.4 2 0 0 2 2 2 0 AAA domain Trigger_N PF05697.13 gi|89256248|ref|YP_513610.1| - 3.1e-37 128.0 7.0 3.1e-37 128.0 7.0 3.2 3 1 0 3 3 3 2 Bacterial trigger factor protein (TF) Trigger_C PF05698.14 gi|89256248|ref|YP_513610.1| - 5.8e-25 88.2 24.1 2.7e-24 86.0 14.3 3.5 4 0 0 4 4 4 2 Bacterial trigger factor protein (TF) C-terminus FKBP_C PF00254.28 gi|89256248|ref|YP_513610.1| - 3.4e-16 59.3 3.8 6.5e-16 58.4 1.4 2.6 2 0 0 2 2 2 1 FKBP-type peptidyl-prolyl cis-trans isomerase SPK PF04435.18 gi|89256248|ref|YP_513610.1| - 0.29 11.6 4.1 5.9 7.3 0.3 3.8 2 2 0 2 2 2 0 Domain of unknown function (DUF545) CLP_protease PF00574.23 gi|89256249|ref|YP_513611.1| - 1.2e-86 289.2 0.0 1.4e-86 289.0 0.0 1.0 1 0 0 1 1 1 1 Clp protease AAA_2 PF07724.14 gi|89256250|ref|YP_513612.1| - 1.1e-47 162.3 0.2 2.1e-47 161.4 0.2 1.5 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA PF00004.29 gi|89256250|ref|YP_513612.1| - 1e-15 58.3 0.1 2.5e-15 57.1 0.1 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ClpB_D2-small PF10431.9 gi|89256250|ref|YP_513612.1| - 1.2e-15 57.3 0.4 3.6e-15 55.8 0.4 1.9 1 0 0 1 1 1 1 C-terminal, D2-small domain, of ClpB protein zf-C4_ClpX PF06689.13 gi|89256250|ref|YP_513612.1| - 4.6e-14 52.0 7.1 1.3e-13 50.5 7.1 1.9 1 0 0 1 1 1 1 ClpX C4-type zinc finger AAA_5 PF07728.14 gi|89256250|ref|YP_513612.1| - 1.1e-07 31.9 0.1 2.1e-06 27.8 0.0 2.9 3 1 0 3 3 3 1 AAA domain (dynein-related subfamily) RuvB_N PF05496.12 gi|89256250|ref|YP_513612.1| - 6.1e-06 26.1 0.2 2.7e-05 24.0 0.2 2.1 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain Mg_chelatase PF01078.21 gi|89256250|ref|YP_513612.1| - 8.9e-06 25.2 0.1 0.0032 16.9 0.1 2.9 2 1 0 3 3 3 1 Magnesium chelatase, subunit ChlI MCM PF00493.23 gi|89256250|ref|YP_513612.1| - 1.9e-05 23.9 0.1 4.1e-05 22.8 0.1 1.5 1 0 0 1 1 1 1 MCM P-loop domain Sigma54_activ_2 PF14532.6 gi|89256250|ref|YP_513612.1| - 4.4e-05 23.6 0.0 0.00013 22.1 0.0 1.9 1 0 0 1 1 1 1 Sigma-54 interaction domain Sigma54_activat PF00158.26 gi|89256250|ref|YP_513612.1| - 7.8e-05 22.4 0.0 0.015 15.0 0.0 2.5 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_22 PF13401.6 gi|89256250|ref|YP_513612.1| - 0.00011 22.5 0.1 0.0015 18.8 0.1 2.4 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|89256250|ref|YP_513612.1| - 0.0022 18.5 0.1 0.0081 16.7 0.0 2.0 2 0 0 2 2 2 1 AAA domain T2SSE PF00437.20 gi|89256250|ref|YP_513612.1| - 0.003 16.7 0.0 0.0069 15.5 0.0 1.6 1 0 0 1 1 1 1 Type II/IV secretion system protein IstB_IS21 PF01695.17 gi|89256250|ref|YP_513612.1| - 0.0031 17.2 0.0 0.0061 16.3 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein TsaE PF02367.17 gi|89256250|ref|YP_513612.1| - 0.0032 17.4 0.0 0.0073 16.3 0.0 1.5 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_7 PF12775.7 gi|89256250|ref|YP_513612.1| - 0.0033 17.0 0.0 0.0085 15.6 0.0 1.7 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_14 PF13173.6 gi|89256250|ref|YP_513612.1| - 0.0039 17.2 0.3 0.014 15.5 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|89256250|ref|YP_513612.1| - 0.005 17.2 0.1 0.018 15.5 0.1 1.9 1 1 0 1 1 1 1 AAA ATPase domain NACHT PF05729.12 gi|89256250|ref|YP_513612.1| - 0.0079 16.1 0.1 0.047 13.6 0.0 2.2 2 0 0 2 2 2 1 NACHT domain AAA_24 PF13479.6 gi|89256250|ref|YP_513612.1| - 0.012 15.3 0.1 0.022 14.5 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|89256250|ref|YP_513612.1| - 0.022 14.9 0.0 0.048 13.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|89256250|ref|YP_513612.1| - 0.023 15.0 0.5 1.7 8.9 0.2 3.2 3 1 1 4 4 3 0 AAA domain DEAD PF00270.29 gi|89256250|ref|YP_513612.1| - 0.032 14.0 1.2 0.21 11.4 1.2 2.5 1 1 0 1 1 1 0 DEAD/DEAH box helicase ResIII PF04851.15 gi|89256250|ref|YP_513612.1| - 0.055 13.5 0.1 0.18 11.8 0.1 1.9 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_29 PF13555.6 gi|89256250|ref|YP_513612.1| - 0.062 13.0 0.0 0.14 11.9 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain NTPase_1 PF03266.15 gi|89256250|ref|YP_513612.1| - 0.064 13.2 1.6 5.4 6.9 0.1 3.1 3 0 0 3 3 3 0 NTPase ABC_tran PF00005.27 gi|89256250|ref|YP_513612.1| - 0.066 13.7 0.1 0.31 11.5 0.1 1.9 1 1 0 1 1 1 0 ABC transporter FtsK_SpoIIIE PF01580.18 gi|89256250|ref|YP_513612.1| - 0.079 12.3 0.0 0.15 11.4 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family RNA_helicase PF00910.22 gi|89256250|ref|YP_513612.1| - 0.079 13.4 0.0 0.18 12.2 0.0 1.7 1 0 0 1 1 1 0 RNA helicase DUF4428 PF14471.6 gi|89256250|ref|YP_513612.1| - 0.084 12.8 4.6 0.11 12.4 2.8 2.3 2 0 0 2 2 1 0 Domain of unknown function (DUF4428) PPV_E1_C PF00519.17 gi|89256250|ref|YP_513612.1| - 0.092 11.6 0.0 0.14 10.9 0.0 1.2 1 0 0 1 1 1 0 Papillomavirus helicase AAA_23 PF13476.6 gi|89256250|ref|YP_513612.1| - 7.7 7.0 10.8 1.8e+02 2.5 10.1 2.6 1 1 0 1 1 1 0 AAA domain Lon_C PF05362.13 gi|89256251|ref|YP_513613.1| - 2.8e-92 307.9 1.6 6.1e-92 306.8 1.6 1.6 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain LON_substr_bdg PF02190.16 gi|89256251|ref|YP_513613.1| - 1.5e-30 106.6 2.2 1.5e-30 106.6 2.2 1.9 2 0 0 2 2 2 1 ATP-dependent protease La (LON) substrate-binding domain AAA PF00004.29 gi|89256251|ref|YP_513613.1| - 2.7e-19 69.9 0.0 1.2e-18 67.9 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|89256251|ref|YP_513613.1| - 1.1e-11 44.9 0.0 2.6e-11 43.7 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) ChlI PF13541.6 gi|89256251|ref|YP_513613.1| - 1.9e-07 31.0 0.0 4.2e-07 29.8 0.0 1.7 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase AAA_16 PF13191.6 gi|89256251|ref|YP_513613.1| - 1.9e-05 25.1 0.0 7.6e-05 23.2 0.0 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_2 PF07724.14 gi|89256251|ref|YP_513613.1| - 0.0014 18.8 0.0 0.0045 17.1 0.0 1.9 1 1 0 1 1 1 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|89256251|ref|YP_513613.1| - 0.002 17.9 0.0 0.007 16.1 0.0 1.9 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_14 PF13173.6 gi|89256251|ref|YP_513613.1| - 0.0031 17.6 1.1 0.021 14.9 0.0 3.0 3 1 1 4 4 4 1 AAA domain AAA_22 PF13401.6 gi|89256251|ref|YP_513613.1| - 0.0034 17.7 0.1 0.051 13.9 0.1 2.5 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|89256251|ref|YP_513613.1| - 0.0063 17.1 0.9 0.029 14.9 0.0 2.5 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|89256251|ref|YP_513613.1| - 0.008 15.9 0.0 0.028 14.1 0.0 1.9 2 0 0 2 2 2 1 IstB-like ATP binding protein TniB PF05621.11 gi|89256251|ref|YP_513613.1| - 0.011 15.1 0.0 0.051 13.0 0.0 2.1 2 0 0 2 2 2 0 Bacterial TniB protein Torsin PF06309.11 gi|89256251|ref|YP_513613.1| - 0.032 14.4 0.0 0.078 13.1 0.0 1.6 1 0 0 1 1 1 0 Torsin AAA_3 PF07726.11 gi|89256251|ref|YP_513613.1| - 0.035 14.0 0.0 0.14 12.1 0.0 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|89256251|ref|YP_513613.1| - 0.043 13.7 0.0 2.1 8.2 0.0 2.4 2 0 0 2 2 2 0 NACHT domain FKS1_dom1 PF14288.6 gi|89256251|ref|YP_513613.1| - 0.16 12.3 1.1 0.44 10.9 1.1 1.8 1 0 0 1 1 1 0 1,3-beta-glucan synthase subunit FKS1, domain-1 AAA_33 PF13671.6 gi|89256251|ref|YP_513613.1| - 0.17 12.0 0.0 0.51 10.5 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|89256251|ref|YP_513613.1| - 0.25 11.8 12.4 1.3 9.5 0.1 2.8 2 1 0 2 2 2 0 AAA domain Bac_DNA_binding PF00216.21 gi|89256252|ref|YP_513614.1| - 5.7e-35 119.4 1.2 6.2e-35 119.3 1.2 1.0 1 0 0 1 1 1 1 Bacterial DNA-binding protein HU-HIG PF18291.1 gi|89256252|ref|YP_513614.1| - 1.9e-07 31.2 0.0 2e-07 31.1 0.0 1.0 1 0 0 1 1 1 1 HU domain fused to wHTH, Ig, or Glycine-rich motif HU-CCDC81_euk_2 PF18289.1 gi|89256252|ref|YP_513614.1| - 4e-06 26.9 0.0 6e-06 26.3 0.0 1.2 1 0 0 1 1 1 1 CCDC81 eukaryotic HU domain 2 HU-CCDC81_bac_2 PF18175.1 gi|89256252|ref|YP_513614.1| - 2.3e-05 24.2 0.0 3.4e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 CCDC81-like prokaryotic HU domain 2 HU-CCDC81_euk_1 PF14908.6 gi|89256252|ref|YP_513614.1| - 0.01 15.9 0.0 0.01 15.9 0.0 1.1 1 0 0 1 1 1 0 CCDC81 eukaryotic HU domain 1 DUF3562 PF12085.8 gi|89256252|ref|YP_513614.1| - 0.1 12.2 0.1 0.14 11.8 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3562) SurA_N_3 PF13624.6 gi|89256253|ref|YP_513615.1| - 2.8e-19 69.5 6.1 2.8e-19 69.5 6.1 4.1 2 2 2 4 4 4 1 SurA N-terminal domain SurA_N_2 PF13623.6 gi|89256253|ref|YP_513615.1| - 4.8e-18 65.4 5.8 4.8e-18 65.4 5.8 3.8 2 2 1 3 3 3 1 SurA N-terminal domain Rotamase_2 PF13145.6 gi|89256253|ref|YP_513615.1| - 9.2e-15 55.6 15.7 4.2e-08 34.1 6.3 3.5 3 0 0 3 3 3 3 PPIC-type PPIASE domain EF-hand_6 PF13405.6 gi|89256253|ref|YP_513615.1| - 0.0064 16.3 0.9 55 4.1 0.2 5.0 4 1 1 5 5 5 0 EF-hand domain Peptidase_M75 PF09375.10 gi|89256253|ref|YP_513615.1| - 0.0099 15.4 5.2 0.0099 15.4 5.2 1.7 2 0 0 2 2 2 1 Imelysin DUF3235 PF11574.8 gi|89256253|ref|YP_513615.1| - 0.55 11.1 5.1 6 7.8 0.3 3.9 3 0 0 3 3 3 0 Protein of unknown function (DUF3235) DUF1366 PF07104.11 gi|89256253|ref|YP_513615.1| - 6.2 6.6 13.5 3.8 7.3 5.6 3.6 2 1 1 3 3 3 0 Protein of unknown function (DUF1366) IPPT PF01715.17 gi|89256254|ref|YP_513616.1| - 6.1e-82 274.8 0.1 7.4e-82 274.6 0.1 1.0 1 0 0 1 1 1 1 IPP transferase IPT PF01745.16 gi|89256254|ref|YP_513616.1| - 7.6e-09 35.3 0.1 1.9e-06 27.5 0.0 2.2 2 0 0 2 2 2 2 Isopentenyl transferase Cytidylate_kin PF02224.18 gi|89256254|ref|YP_513616.1| - 0.0044 16.8 0.2 0.011 15.5 0.2 1.9 1 1 0 1 1 1 1 Cytidylate kinase Hydin_ADK PF17213.3 gi|89256254|ref|YP_513616.1| - 0.0086 16.4 0.7 0.014 15.7 0.1 1.6 2 0 0 2 2 2 1 Hydin Adenylate kinase-like domain Nup54_C PF18437.1 gi|89256254|ref|YP_513616.1| - 0.035 14.0 1.4 0.65 9.9 0.3 2.7 2 0 0 2 2 2 0 Nup54 C-terminal interacting domain AAA_33 PF13671.6 gi|89256254|ref|YP_513616.1| - 0.036 14.2 0.0 0.13 12.4 0.0 2.0 2 2 0 2 2 2 0 AAA domain RuvB_N PF05496.12 gi|89256254|ref|YP_513616.1| - 0.08 12.7 0.1 0.16 11.7 0.1 1.5 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain AAA PF00004.29 gi|89256254|ref|YP_513616.1| - 0.09 13.2 0.2 0.35 11.3 0.1 2.2 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 gi|89256254|ref|YP_513616.1| - 0.12 12.9 0.1 0.55 10.8 0.0 2.2 2 1 1 3 3 3 0 AAA domain Hfq PF17209.3 gi|89256255|ref|YP_513617.1| - 4.1e-30 103.2 0.2 5.6e-30 102.8 0.2 1.2 1 0 0 1 1 1 1 Hfq protein LSM PF01423.22 gi|89256255|ref|YP_513617.1| - 0.00059 19.5 0.0 0.00083 19.0 0.0 1.3 1 0 0 1 1 1 1 LSM domain Carmo_coat_C PF08462.10 gi|89256255|ref|YP_513617.1| - 0.0051 16.9 0.0 0.0062 16.6 0.0 1.2 1 0 0 1 1 1 1 Carmovirus coat protein GTP-bdg_M PF16360.5 gi|89256256|ref|YP_513618.1| - 9.9e-31 106.2 6.1 2e-30 105.2 6.1 1.5 1 0 0 1 1 1 1 GTP-binding GTPase Middle Region GTP-bdg_N PF13167.6 gi|89256256|ref|YP_513618.1| - 1.5e-25 89.7 0.0 4.9e-25 88.0 0.0 2.0 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal MMR_HSR1 PF01926.23 gi|89256256|ref|YP_513618.1| - 4.8e-21 75.0 0.3 1.2e-20 73.7 0.1 1.8 2 0 0 2 2 2 1 50S ribosome-binding GTPase GTP_EFTU PF00009.27 gi|89256256|ref|YP_513618.1| - 0.00073 19.1 0.1 1.2 8.6 0.0 2.5 2 1 0 2 2 2 2 Elongation factor Tu GTP binding domain Dynamin_N PF00350.23 gi|89256256|ref|YP_513618.1| - 0.0011 19.1 0.1 0.014 15.5 0.0 2.3 1 1 1 2 2 2 1 Dynamin family Arf PF00025.21 gi|89256256|ref|YP_513618.1| - 0.0013 18.2 0.9 0.011 15.2 0.8 2.2 1 1 0 1 1 1 1 ADP-ribosylation factor family RsgA_GTPase PF03193.16 gi|89256256|ref|YP_513618.1| - 0.0023 17.9 0.1 0.13 12.2 0.0 2.3 2 0 0 2 2 2 1 RsgA GTPase FeoB_N PF02421.18 gi|89256256|ref|YP_513618.1| - 0.0042 16.6 0.3 0.01 15.3 0.3 1.9 1 1 0 1 1 1 1 Ferrous iron transport protein B cobW PF02492.19 gi|89256256|ref|YP_513618.1| - 0.023 14.3 1.8 0.68 9.5 0.3 2.5 1 1 1 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain TniB PF05621.11 gi|89256256|ref|YP_513618.1| - 0.063 12.7 0.1 0.14 11.6 0.1 1.5 1 0 0 1 1 1 0 Bacterial TniB protein ABC_tran PF00005.27 gi|89256256|ref|YP_513618.1| - 0.11 13.1 0.3 0.94 10.0 0.0 2.5 1 1 1 2 2 2 0 ABC transporter DUF3243 PF11588.8 gi|89256257|ref|YP_513619.1| - 0.04 14.2 0.0 0.061 13.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3243) FAD_binding_3 PF01494.19 gi|89256257|ref|YP_513619.1| - 0.043 13.0 0.0 0.053 12.7 0.0 1.1 1 0 0 1 1 1 0 FAD binding domain PhaP_Bmeg PF09602.10 gi|89256257|ref|YP_513619.1| - 0.12 12.3 0.0 0.16 11.9 0.0 1.1 1 0 0 1 1 1 0 Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg) Pyr_redox_2 PF07992.14 gi|89256258|ref|YP_513620.1| - 0.0006 19.1 0.0 0.00076 18.8 0.0 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|89256258|ref|YP_513620.1| - 0.0021 17.3 0.0 0.0021 17.3 0.0 1.1 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_3 PF13738.6 gi|89256258|ref|YP_513620.1| - 0.024 13.9 0.0 0.032 13.5 0.0 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|89256259|ref|YP_513621.1| - 4.4e-07 30.0 0.0 5e-07 29.8 0.0 1.2 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|89256259|ref|YP_513621.1| - 0.0029 17.2 0.0 0.0031 17.1 0.0 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase FMO-like PF00743.19 gi|89256259|ref|YP_513621.1| - 0.0059 15.1 0.0 0.0061 15.0 0.0 1.0 1 0 0 1 1 1 1 Flavin-binding monooxygenase-like Pyr_redox PF00070.27 gi|89256259|ref|YP_513621.1| - 0.019 15.5 0.0 0.022 15.3 0.0 1.1 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 gi|89256259|ref|YP_513621.1| - 0.05 12.8 0.0 0.055 12.7 0.0 1.0 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|89256259|ref|YP_513621.1| - 0.087 12.1 0.0 0.1 11.8 0.0 1.0 1 0 0 1 1 1 0 FAD binding domain Band_7 PF01145.25 gi|89256260|ref|YP_513622.1| - 6.9e-24 84.8 3.3 1.2e-23 84.1 3.3 1.4 1 0 0 1 1 1 1 SPFH domain / Band 7 family HflK_N PF12221.8 gi|89256260|ref|YP_513622.1| - 0.002 18.1 0.1 0.0045 17.0 0.1 1.6 1 0 0 1 1 1 1 Bacterial membrane protein N terminal DUF2956 PF11169.8 gi|89256260|ref|YP_513622.1| - 0.007 16.5 0.1 0.024 14.8 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF2956) IlvC PF01450.19 gi|89256260|ref|YP_513622.1| - 0.014 15.6 1.5 0.053 13.8 0.3 2.3 3 0 0 3 3 3 0 Acetohydroxy acid isomeroreductase, catalytic domain ETRAMP PF09716.10 gi|89256260|ref|YP_513622.1| - 0.017 15.2 0.0 0.046 13.8 0.0 1.8 1 0 0 1 1 1 0 Malarial early transcribed membrane protein (ETRAMP) DUF3899 PF13038.6 gi|89256260|ref|YP_513622.1| - 0.031 14.8 0.1 0.067 13.7 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3899) Band_7 PF01145.25 gi|89256261|ref|YP_513623.1| - 2.6e-29 102.5 9.4 6.5e-29 101.2 9.2 1.8 1 1 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|89256261|ref|YP_513623.1| - 0.0002 21.1 2.4 0.0024 17.6 0.9 2.4 1 1 1 2 2 2 1 SPFH domain-Band 7 family CNOT1_TTP_bind PF16417.5 gi|89256261|ref|YP_513623.1| - 0.00089 18.5 1.4 0.00089 18.5 1.4 1.8 2 0 0 2 2 2 1 CCR4-NOT transcription complex subunit 1 TTP binding domain ComA PF02679.15 gi|89256261|ref|YP_513623.1| - 0.0093 15.4 1.2 0.0093 15.4 1.2 1.5 2 0 0 2 2 2 1 (2R)-phospho-3-sulfolactate synthase (ComA) V-ATPase_G_2 PF16999.5 gi|89256261|ref|YP_513623.1| - 0.017 15.5 6.0 0.044 14.2 6.0 1.7 1 0 0 1 1 1 0 Vacuolar (H+)-ATPase G subunit HpaP PF09483.10 gi|89256261|ref|YP_513623.1| - 0.082 13.2 0.4 0.37 11.0 0.1 2.0 2 0 0 2 2 2 0 Type III secretion protein (HpaP) Ald_Xan_dh_C2 PF02738.18 gi|89256261|ref|YP_513623.1| - 0.13 10.7 3.1 0.18 10.3 3.1 1.1 1 0 0 1 1 1 0 Molybdopterin-binding domain of aldehyde dehydrogenase DivIVA PF05103.13 gi|89256261|ref|YP_513623.1| - 0.31 11.1 10.2 0.76 9.9 10.0 1.9 1 1 0 1 1 1 0 DivIVA protein Coleoptericin PF06286.11 gi|89256261|ref|YP_513623.1| - 0.44 10.7 1.8 0.77 9.9 0.1 2.0 2 0 0 2 2 2 0 Coleoptericin LMWPc PF01451.21 gi|89256262|ref|YP_513624.1| - 2.5e-33 115.4 0.0 2.9e-33 115.3 0.0 1.0 1 0 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase MMR_HSR1 PF01926.23 gi|89256263|ref|YP_513625.1| - 1.6e-18 66.8 0.0 2.2e-18 66.4 0.0 1.3 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|89256263|ref|YP_513625.1| - 3.8e-07 29.7 0.0 4.8e-07 29.4 0.0 1.1 1 0 0 1 1 1 1 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|89256263|ref|YP_513625.1| - 1.7e-06 28.0 0.6 0.0031 17.4 0.0 2.2 2 0 0 2 2 2 2 RsgA GTPase GTP_EFTU PF00009.27 gi|89256263|ref|YP_513625.1| - 0.00019 21.0 0.1 0.0026 17.3 0.0 2.0 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain SRPRB PF09439.10 gi|89256263|ref|YP_513625.1| - 0.00028 20.4 0.0 0.00064 19.2 0.0 1.4 1 1 0 1 1 1 1 Signal recognition particle receptor beta subunit Dynamin_N PF00350.23 gi|89256263|ref|YP_513625.1| - 0.00032 20.8 0.0 0.41 10.7 0.0 2.3 1 1 1 2 2 2 2 Dynamin family Pertactin PF03212.14 gi|89256263|ref|YP_513625.1| - 0.12 12.3 0.1 4.4 7.3 0.0 2.3 2 0 0 2 2 2 0 Pertactin LeuA_dimer PF08502.10 gi|89256264|ref|YP_513626.1| - 2.7e-09 37.0 0.1 3.2e-09 36.8 0.1 1.0 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain LeuA_dimer PF08502.10 gi|89256265|ref|YP_513627.1| - 2.6e-05 24.2 0.0 2.6e-05 24.2 0.0 1.0 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain ACT_5 PF13710.6 gi|89256266|ref|YP_513628.1| - 5.5e-07 29.3 2.0 7.5e-07 28.9 2.0 1.2 1 0 0 1 1 1 1 ACT domain ACT PF01842.25 gi|89256266|ref|YP_513628.1| - 5.8e-05 22.8 0.8 9.3e-05 22.1 0.8 1.3 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.6 gi|89256266|ref|YP_513628.1| - 0.00019 21.9 2.9 0.00028 21.4 2.9 1.2 1 0 0 1 1 1 1 ACT domain IlvN PF07991.12 gi|89256267|ref|YP_513629.1| - 2.5e-46 157.2 0.1 4.2e-46 156.5 0.1 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain IlvC PF01450.19 gi|89256267|ref|YP_513629.1| - 2.2e-44 151.2 0.1 3.8e-44 150.5 0.1 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain NAD_binding_2 PF03446.15 gi|89256267|ref|YP_513629.1| - 9.9e-05 22.6 0.0 0.00023 21.4 0.0 1.6 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|89256267|ref|YP_513629.1| - 0.0049 17.4 0.2 0.014 16.0 0.2 1.8 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 gi|89256267|ref|YP_513629.1| - 0.036 13.4 0.0 0.066 12.6 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Mur_ligase PF01225.25 gi|89256267|ref|YP_513629.1| - 0.062 13.6 0.1 0.31 11.4 0.0 2.2 2 0 0 2 2 2 0 Mur ligase family, catalytic domain CarD_CdnL_TRCF PF02559.16 gi|89256268|ref|YP_513630.1| - 8.8e-24 84.1 0.8 7.4e-23 81.1 0.3 2.8 2 0 0 2 2 2 1 CarD-like/TRCF domain Helicase_C PF00271.31 gi|89256268|ref|YP_513630.1| - 1.2e-22 80.3 16.5 2.7e-19 69.6 0.7 4.1 4 1 0 4 4 4 2 Helicase conserved C-terminal domain TRCF PF03461.15 gi|89256268|ref|YP_513630.1| - 4.2e-22 78.3 0.3 2e-21 76.2 0.3 2.3 1 0 0 1 1 1 1 TRCF domain DEAD PF00270.29 gi|89256268|ref|YP_513630.1| - 2.8e-20 72.8 3.1 3.4e-20 72.6 0.9 2.4 3 0 0 3 3 3 1 DEAD/DEAH box helicase UvrB_inter PF17757.1 gi|89256268|ref|YP_513630.1| - 4.9e-20 71.5 0.1 2.2e-19 69.4 0.1 2.3 1 0 0 1 1 1 1 UvrB interaction domain ResIII PF04851.15 gi|89256268|ref|YP_513630.1| - 2e-12 47.5 1.0 2e-12 47.5 1.0 2.4 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit ERCC3_RAD25_C PF16203.5 gi|89256268|ref|YP_513630.1| - 9e-05 21.8 0.0 0.00025 20.4 0.0 1.7 1 0 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase AAA_22 PF13401.6 gi|89256268|ref|YP_513630.1| - 0.0091 16.3 0.6 0.13 12.5 0.1 2.6 2 0 0 2 2 2 1 AAA domain UB2H PF14814.6 gi|89256268|ref|YP_513630.1| - 0.02 14.9 0.0 0.092 12.8 0.0 2.2 1 1 0 1 1 1 0 Bifunctional transglycosylase second domain Bax1-I PF01027.20 gi|89256269|ref|YP_513631.1| - 1.6e-38 132.6 35.3 1.8e-38 132.4 35.3 1.0 1 0 0 1 1 1 1 Inhibitor of apoptosis-promoting Bax1 Bacteriocin_IId PF09221.10 gi|89256269|ref|YP_513631.1| - 0.023 14.8 3.1 0.073 13.3 3.1 2.0 1 0 0 1 1 1 0 Bacteriocin class IId cyclical uberolysin-like DUF4131 PF13567.6 gi|89256269|ref|YP_513631.1| - 7.1 6.3 16.4 0.39 10.4 3.1 2.9 2 1 1 3 3 3 0 Domain of unknown function (DUF4131) DUF1841 PF08897.11 gi|89256271|ref|YP_513633.1| - 2.3e-47 160.4 2.7 2.6e-47 160.2 2.7 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1841) HhH-GPD PF00730.25 gi|89256272|ref|YP_513634.1| - 1.4e-21 76.9 0.1 2.1e-21 76.4 0.1 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|89256272|ref|YP_513634.1| - 1.4e-07 31.0 0.0 2.9e-07 30.0 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|89256272|ref|YP_513634.1| - 0.00076 20.0 0.2 0.14 12.7 0.0 2.4 2 0 0 2 2 2 2 Helix-hairpin-helix domain EndIII_4Fe-2S PF10576.9 gi|89256272|ref|YP_513634.1| - 0.002 18.4 5.5 0.0033 17.7 5.5 1.3 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III Fer4_21 PF14697.6 gi|89256273|ref|YP_513635.1| - 1.9e-16 60.0 14.8 1.9e-16 60.0 14.8 2.3 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|89256273|ref|YP_513635.1| - 1.5e-10 40.5 19.0 8.1e-08 31.8 4.2 2.9 4 0 0 4 4 3 2 4Fe-4S binding domain FeS PF04060.13 gi|89256273|ref|YP_513635.1| - 5.3e-10 38.8 1.1 5.3e-10 38.8 1.1 2.4 3 0 0 3 3 2 1 Putative Fe-S cluster Fer4_10 PF13237.6 gi|89256273|ref|YP_513635.1| - 1.1e-08 35.0 19.1 1.6e-06 28.2 10.4 3.4 2 2 1 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|89256273|ref|YP_513635.1| - 1.1e-07 32.3 16.3 0.0012 19.3 1.1 2.9 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|89256273|ref|YP_513635.1| - 4.9e-07 29.8 32.4 5.6e-06 26.4 14.3 2.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|89256273|ref|YP_513635.1| - 1.8e-06 27.8 3.6 1.8e-06 27.8 3.6 3.3 4 0 0 4 4 3 1 4Fe-4S binding domain Fer4_2 PF12797.7 gi|89256273|ref|YP_513635.1| - 7.6e-06 25.7 20.2 3.3e-05 23.7 1.5 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|89256273|ref|YP_513635.1| - 1.1e-05 26.2 19.9 0.0011 19.8 1.2 3.6 3 1 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_3 PF12798.7 gi|89256273|ref|YP_513635.1| - 0.0049 17.7 3.8 0.0049 17.7 3.8 3.2 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_17 PF13534.6 gi|89256273|ref|YP_513635.1| - 0.0054 17.3 21.2 0.34 11.5 5.2 3.0 2 2 1 3 3 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|89256273|ref|YP_513635.1| - 0.042 14.4 2.1 0.042 14.4 2.1 3.6 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|89256273|ref|YP_513635.1| - 0.059 13.8 21.0 0.064 13.7 2.8 3.1 1 1 2 3 3 3 0 4Fe-4S dicluster domain DUF3410 PF11890.8 gi|89256273|ref|YP_513635.1| - 0.091 12.6 0.5 0.16 11.8 0.5 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3410) Fer4_22 PF17179.4 gi|89256273|ref|YP_513635.1| - 0.12 13.2 19.5 0.49 11.3 5.7 3.1 2 2 1 3 3 3 0 4Fe-4S dicluster domain Glutaredoxin2_C PF04399.13 gi|89256274|ref|YP_513636.1| - 1.4e-35 122.0 0.0 1.8e-35 121.6 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin 2, C terminal domain GST_N_3 PF13417.6 gi|89256274|ref|YP_513636.1| - 1.5e-09 38.1 0.0 2.9e-09 37.2 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.6 gi|89256274|ref|YP_513636.1| - 2.6e-06 27.6 0.0 5.7e-06 26.5 0.0 1.6 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.24 gi|89256274|ref|YP_513636.1| - 0.00024 21.3 0.0 0.0004 20.5 0.0 1.4 1 0 0 1 1 1 1 Glutaredoxin GST_N_4 PF17172.4 gi|89256274|ref|YP_513636.1| - 0.042 14.6 0.0 0.089 13.5 0.0 1.6 1 0 0 1 1 1 0 Glutathione S-transferase N-terminal domain GST_C_3 PF14497.6 gi|89256274|ref|YP_513636.1| - 0.045 14.0 0.1 0.28 11.4 0.1 2.3 1 1 0 1 1 1 0 Glutathione S-transferase, C-terminal domain GST_C_2 PF13410.6 gi|89256274|ref|YP_513636.1| - 0.068 13.2 0.0 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 Glutathione S-transferase, C-terminal domain GST_C PF00043.25 gi|89256274|ref|YP_513636.1| - 0.13 12.5 0.0 0.27 11.5 0.0 1.5 1 0 0 1 1 1 0 Glutathione S-transferase, C-terminal domain DUF1993 PF09351.10 gi|89256274|ref|YP_513636.1| - 0.15 12.2 0.0 0.25 11.5 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1993) PTR2 PF00854.21 gi|89256276|ref|YP_513638.1| - 1.5e-21 76.7 22.3 1.5e-21 76.7 22.3 1.6 1 1 0 1 1 1 1 POT family Gp5_OB PF06714.11 gi|89256276|ref|YP_513638.1| - 0.094 13.0 0.1 0.17 12.1 0.1 1.4 1 0 0 1 1 1 0 Gp5 N-terminal OB domain DUF202 PF02656.15 gi|89256276|ref|YP_513638.1| - 1.7 9.1 18.9 10 6.7 1.0 4.9 3 1 0 3 3 3 0 Domain of unknown function (DUF202) Ferritin PF00210.24 gi|89256277|ref|YP_513639.1| - 6.8e-38 129.8 3.3 7.8e-38 129.6 3.3 1.0 1 0 0 1 1 1 1 Ferritin-like domain Rubrerythrin PF02915.17 gi|89256277|ref|YP_513639.1| - 0.00028 21.3 1.2 0.0004 20.8 1.2 1.3 1 0 0 1 1 1 1 Rubrerythrin RDD PF06271.12 gi|89256277|ref|YP_513639.1| - 0.13 12.5 0.0 0.58 10.3 0.0 1.9 2 0 0 2 2 2 0 RDD family Lipoprotein_10 PF03202.13 gi|89256277|ref|YP_513639.1| - 0.67 10.4 4.2 0.43 11.0 0.3 2.3 1 1 0 2 2 2 0 Putative mycoplasma lipoprotein, C-terminal region Radical_SAM PF04055.21 gi|89256278|ref|YP_513640.1| - 2.1e-12 47.8 0.0 3.2e-12 47.2 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily LIAS_N PF16881.5 gi|89256278|ref|YP_513640.1| - 2.2e-08 34.4 0.2 4.4e-08 33.5 0.2 1.5 1 0 0 1 1 1 1 N-terminal domain of lipoyl synthase of Radical_SAM family Ivy PF08816.11 gi|89256278|ref|YP_513640.1| - 0.11 12.7 0.9 0.42 10.8 0.8 1.9 2 0 0 2 2 2 0 Inhibitor of vertebrate lysozyme (Ivy) DUF4889 PF16230.5 gi|89256278|ref|YP_513640.1| - 0.99 9.7 12.4 1.8 8.8 2.4 3.0 2 1 0 2 2 2 0 Domain of unknown function (DUF4889) DJ-1_PfpI PF01965.24 gi|89256279|ref|YP_513641.1| - 1.9e-08 34.3 0.1 1.6e-07 31.3 0.1 2.1 1 1 0 1 1 1 1 DJ-1/PfpI family Transcrip_reg PF01709.20 gi|89256280|ref|YP_513642.1| - 4e-97 324.3 1.0 4.5e-97 324.2 1.0 1.0 1 0 0 1 1 1 1 Transcriptional regulator RuvC PF02075.17 gi|89256281|ref|YP_513643.1| - 2.7e-54 183.1 1.6 3.2e-54 182.8 1.6 1.0 1 0 0 1 1 1 1 Crossover junction endodeoxyribonuclease RuvC DUF3882 PF07066.11 gi|89256281|ref|YP_513643.1| - 0.0024 17.9 0.2 0.018 15.1 0.2 1.9 1 1 1 2 2 2 1 Lactococcus phage M3 protein DUF4454 PF14628.6 gi|89256281|ref|YP_513643.1| - 0.02 14.7 0.1 0.03 14.2 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4454) BcrAD_BadFG PF01869.20 gi|89256281|ref|YP_513643.1| - 0.041 13.4 0.1 0.15 11.6 0.1 1.8 1 1 1 2 2 2 0 BadF/BadG/BcrA/BcrD ATPase family MFS_1 PF07690.16 gi|89256282|ref|YP_513644.1| - 4.4e-37 127.8 69.4 4.3e-33 114.7 42.7 1.6 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF5508 PF17621.2 gi|89256282|ref|YP_513644.1| - 0.15 11.2 0.5 0.27 10.4 0.5 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5508) RuvA_N PF01330.21 gi|89256283|ref|YP_513645.1| - 3.5e-24 84.7 0.3 2.3e-23 82.0 0.2 2.2 2 0 0 2 2 2 1 RuvA N terminal domain HHH_5 PF14520.6 gi|89256283|ref|YP_513645.1| - 3.9e-15 56.2 1.1 1.5e-13 51.1 0.1 3.0 3 0 0 3 3 3 1 Helix-hairpin-helix domain RuvA_C PF07499.13 gi|89256283|ref|YP_513645.1| - 2.8e-11 43.7 0.3 6.9e-11 42.4 0.3 1.7 1 0 0 1 1 1 1 RuvA, C-terminal domain HHH PF00633.23 gi|89256283|ref|YP_513645.1| - 1.1e-07 31.3 5.6 0.00092 19.0 0.0 3.8 5 0 0 5 5 5 2 Helix-hairpin-helix motif 5_3_exonuc PF01367.20 gi|89256283|ref|YP_513645.1| - 0.00026 21.5 0.6 0.1 13.2 0.1 2.5 1 1 1 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold Transposase_20 PF02371.16 gi|89256283|ref|YP_513645.1| - 0.0006 20.1 0.7 0.037 14.3 0.0 2.6 3 0 0 3 3 3 1 Transposase IS116/IS110/IS902 family HHH_3 PF12836.7 gi|89256283|ref|YP_513645.1| - 0.0007 19.8 0.0 0.25 11.6 0.0 2.9 3 0 0 3 3 3 1 Helix-hairpin-helix motif HHH_2 PF12826.7 gi|89256283|ref|YP_513645.1| - 0.0014 18.7 0.1 1.8 8.7 0.0 3.0 2 1 1 3 3 3 2 Helix-hairpin-helix motif IMS_HHH PF11798.8 gi|89256283|ref|YP_513645.1| - 0.013 15.8 0.8 0.24 11.8 0.0 2.7 3 0 0 3 3 2 0 IMS family HHH motif HHH_8 PF14716.6 gi|89256283|ref|YP_513645.1| - 0.02 15.2 0.1 1.8 9.0 0.0 2.6 2 0 0 2 2 2 0 Helix-hairpin-helix domain Ribosomal_S13 PF00416.22 gi|89256283|ref|YP_513645.1| - 0.041 14.3 0.5 2.4 8.6 0.1 2.4 1 1 1 2 2 2 0 Ribosomal protein S13/S18 DNA_pol_lambd_f PF10391.9 gi|89256283|ref|YP_513645.1| - 0.042 13.7 0.0 5.8 6.8 0.0 2.6 2 0 0 2 2 2 0 Fingers domain of DNA polymerase lambda HHH_4 PF14490.6 gi|89256283|ref|YP_513645.1| - 0.093 12.7 0.2 1 9.4 0.0 2.5 3 0 0 3 3 3 0 Helix-hairpin-helix containing domain Cdd1 PF11731.8 gi|89256283|ref|YP_513645.1| - 0.18 12.1 0.0 1 9.7 0.0 2.2 2 0 0 2 2 2 0 Pathogenicity locus RmuC PF02646.16 gi|89256284|ref|YP_513646.1| - 1.6e-100 336.0 7.5 1.6e-100 336.0 7.5 2.5 3 0 0 3 3 3 2 RmuC family Prominin PF05478.11 gi|89256284|ref|YP_513646.1| - 9e-06 24.0 19.3 9e-06 24.0 19.3 2.3 3 0 0 3 3 3 1 Prominin DUF5082 PF16888.5 gi|89256284|ref|YP_513646.1| - 0.0031 17.8 15.5 0.0031 17.8 15.5 4.5 3 1 0 4 4 4 2 Domain of unknown function (DUF5082) AI-2E_transport PF01594.16 gi|89256284|ref|YP_513646.1| - 0.012 14.8 1.4 0.012 14.8 1.4 3.8 4 1 1 5 5 5 0 AI-2E family transporter DUF3502 PF12010.8 gi|89256284|ref|YP_513646.1| - 0.15 12.7 0.2 0.15 12.7 0.2 3.5 2 1 1 3 3 3 0 Domain of unknown function (DUF3502) NB PF04159.13 gi|89256284|ref|YP_513646.1| - 0.16 12.0 0.3 0.29 11.2 0.3 1.4 1 0 0 1 1 1 0 NB glycoprotein Flagellin_C PF00700.21 gi|89256284|ref|YP_513646.1| - 0.23 11.8 8.6 1 9.7 0.4 3.0 2 0 0 2 2 2 0 Bacterial flagellin C-terminal helical region WXG100 PF06013.12 gi|89256284|ref|YP_513646.1| - 0.48 10.7 14.0 2 8.7 0.3 4.4 5 0 0 5 5 5 0 Proteins of 100 residues with WXG Golgin_A5 PF09787.9 gi|89256284|ref|YP_513646.1| - 0.53 9.7 32.4 0.41 10.1 23.2 2.4 1 1 1 2 2 2 0 Golgin subfamily A member 5 Chordopox_A13L PF05961.11 gi|89256284|ref|YP_513646.1| - 0.56 10.5 2.7 1.1 9.6 0.2 2.8 2 0 0 2 2 2 0 Chordopoxvirus A13L protein T2SSM PF04612.12 gi|89256284|ref|YP_513646.1| - 4 7.5 6.2 4.2 7.4 1.6 2.9 2 1 0 3 3 3 0 Type II secretion system (T2SS), protein M Noelin-1 PF12308.8 gi|89256284|ref|YP_513646.1| - 7.1 6.7 21.2 11 6.0 2.1 5.0 3 1 4 7 7 7 0 Neurogenesis glycoprotein Ni_hydr_CYTB PF01292.20 gi|89256285|ref|YP_513647.1| - 1.3e-07 31.5 2.6 1.4e-07 31.3 2.6 1.0 1 0 0 1 1 1 1 Prokaryotic cytochrome b561 PsaA_PsaB PF00223.19 gi|89256285|ref|YP_513647.1| - 0.076 11.2 3.0 1.8 6.7 0.3 2.0 2 0 0 2 2 2 0 Photosystem I psaA/psaB protein HTH_24 PF13412.6 gi|89256286|ref|YP_513648.1| - 3.7e-05 23.2 0.1 5.1e-05 22.7 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|89256286|ref|YP_513648.1| - 0.0033 17.4 0.0 0.0048 16.8 0.0 1.4 1 0 0 1 1 1 1 HTH domain MarR PF01047.22 gi|89256286|ref|YP_513648.1| - 0.047 13.6 0.1 0.11 12.4 0.1 1.6 1 1 1 2 2 2 0 MarR family HTH_Crp_2 PF13545.6 gi|89256286|ref|YP_513648.1| - 0.08 12.9 0.0 0.1 12.6 0.0 1.1 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Rrf2 PF02082.20 gi|89256286|ref|YP_513648.1| - 0.11 12.9 0.0 0.14 12.5 0.0 1.1 1 0 0 1 1 1 0 Transcriptional regulator Amidohydro_2 PF04909.14 gi|89256288|ref|YP_513650.1| - 5.6e-14 52.6 0.0 6.9e-14 52.3 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase Pyridoxal_deC PF00282.19 gi|89256289|ref|YP_513651.1| - 1.5e-16 60.1 0.0 3.1e-16 59.1 0.0 1.6 1 1 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aldolase_II PF00596.21 gi|89256290|ref|YP_513652.1| - 9.2e-39 133.3 1.2 1.2e-38 132.9 1.2 1.1 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain Carb_kinase PF01256.17 gi|89256290|ref|YP_513652.1| - 0.075 12.5 0.1 1.3 8.4 0.0 2.1 1 1 0 2 2 2 0 Carbohydrate kinase DUF5349 PF17298.2 gi|89256290|ref|YP_513652.1| - 0.12 12.1 0.0 0.19 11.5 0.0 1.3 1 1 0 1 1 1 0 Family of unknown function (DUF5349) Pur_DNA_glyco PF02245.16 gi|89256291|ref|YP_513653.1| - 3.2e-62 209.0 0.0 3.6e-62 208.9 0.0 1.0 1 0 0 1 1 1 1 Methylpurine-DNA glycosylase (MPG) Isochorismatase PF00857.20 gi|89256292|ref|YP_513654.1| - 7.5e-19 68.6 0.0 9e-19 68.3 0.0 1.1 1 0 0 1 1 1 1 Isochorismatase family NMN_transporter PF04973.12 gi|89256293|ref|YP_513655.1| - 8.3e-44 149.6 22.5 9.5e-44 149.4 22.5 1.0 1 0 0 1 1 1 1 Nicotinamide mononucleotide transporter CbiX PF01903.17 gi|89256293|ref|YP_513655.1| - 0.15 12.4 0.0 0.25 11.7 0.0 1.3 1 0 0 1 1 1 0 CbiX ThrE PF06738.12 gi|89256293|ref|YP_513655.1| - 2.3 7.5 7.0 6.7 6.0 0.8 2.1 2 0 0 2 2 2 0 Putative threonine/serine exporter Na_H_Exchanger PF00999.21 gi|89256294|ref|YP_513656.1| - 1.3e-58 198.7 50.5 1.6e-58 198.3 50.5 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family DUF2530 PF10745.9 gi|89256294|ref|YP_513656.1| - 7.8 6.8 12.6 0.91 9.8 0.1 4.2 4 0 0 4 4 4 0 Protein of unknown function (DUF2530) MS_channel PF00924.18 gi|89256295|ref|YP_513657.1| - 2e-12 47.1 4.9 2e-12 47.1 4.9 1.6 2 0 0 2 2 2 1 Mechanosensitive ion channel DUF2909 PF11137.8 gi|89256295|ref|YP_513657.1| - 1.8e-05 24.6 6.5 1.8e-05 24.6 6.5 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF2909) Insulin_TMD PF17870.1 gi|89256295|ref|YP_513657.1| - 0.0024 17.9 0.2 0.0024 17.9 0.2 3.0 2 1 1 3 3 3 1 Insulin receptor trans-membrane segment DUF2231 PF09990.9 gi|89256295|ref|YP_513657.1| - 0.015 15.7 3.1 0.02 15.3 0.6 2.2 1 1 2 3 3 3 0 Predicted membrane protein (DUF2231) MTABC_N PF16185.5 gi|89256295|ref|YP_513657.1| - 0.064 12.7 6.3 0.076 12.5 6.3 1.1 1 0 0 1 1 1 0 Mitochondrial ABC-transporter N-terminal five TM region DUF2116 PF09889.9 gi|89256295|ref|YP_513657.1| - 4 7.5 8.0 0.68 10.0 1.0 2.3 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) MFS_1 PF07690.16 gi|89256296|ref|YP_513658.1| - 6.3e-29 101.0 33.0 8.9e-29 100.5 33.0 1.1 1 0 0 1 1 1 1 Major Facilitator Superfamily Phage_holin_3_2 PF04550.12 gi|89256296|ref|YP_513658.1| - 0.026 15.1 1.8 0.11 13.0 1.8 2.1 1 0 0 1 1 1 0 Phage holin family 2 AstE_AspA PF04952.14 gi|89256297|ref|YP_513659.1| - 1.5e-30 106.3 0.0 1.8e-30 106.1 0.0 1.0 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Pribosyltran_N PF13793.6 gi|89256298|ref|YP_513660.1| - 9.5e-49 164.2 0.1 2.6e-47 159.5 0.0 2.2 2 0 0 2 2 2 1 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyl_synth PF14572.6 gi|89256298|ref|YP_513660.1| - 1.8e-25 90.0 2.2 4.3e-24 85.6 0.6 2.4 1 1 1 2 2 2 1 Phosphoribosyl synthetase-associated domain Pribosyltran PF00156.27 gi|89256298|ref|YP_513660.1| - 7.1e-20 71.1 2.5 2.3e-19 69.5 0.4 2.5 3 0 0 3 3 3 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|89256298|ref|YP_513660.1| - 0.0041 16.6 0.1 0.0079 15.7 0.1 1.5 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Ribosomal_L25p PF01386.19 gi|89256299|ref|YP_513661.1| - 2.9e-27 95.0 0.1 3.2e-27 94.8 0.1 1.0 1 0 0 1 1 1 1 Ribosomal L25p family DUF21 PF01595.20 gi|89256300|ref|YP_513662.1| - 7.3e-52 175.6 8.1 1.5e-51 174.6 8.1 1.5 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain CorC_HlyC PF03471.17 gi|89256300|ref|YP_513662.1| - 1.6e-16 60.0 0.1 5.2e-16 58.4 0.0 1.9 2 0 0 2 2 2 1 Transporter associated domain CBS PF00571.28 gi|89256300|ref|YP_513662.1| - 1.6e-07 31.6 0.1 0.002 18.6 0.0 2.7 2 0 0 2 2 2 2 CBS domain MFS_1 PF07690.16 gi|89256300|ref|YP_513662.1| - 0.0079 15.2 8.9 0.011 14.7 8.9 1.1 1 0 0 1 1 1 1 Major Facilitator Superfamily DUF1514 PF07438.11 gi|89256300|ref|YP_513662.1| - 0.52 10.2 7.9 0.11 12.3 0.7 2.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1514) Imm3 PF14425.6 gi|89256300|ref|YP_513662.1| - 1.1 9.3 5.2 2.3 8.3 0.3 3.1 2 1 1 3 3 3 0 Immunity protein Imm3 MinE PF03776.14 gi|89256301|ref|YP_513663.1| - 0.04 13.9 0.5 0.046 13.7 0.5 1.2 1 0 0 1 1 1 0 Septum formation topological specificity factor MinE Methyltransf_11 PF08241.12 gi|89256302|ref|YP_513664.1| - 5.1e-19 68.7 0.0 8.5e-19 68.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|89256302|ref|YP_513664.1| - 5.6e-17 62.2 0.0 9.9e-17 61.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|89256302|ref|YP_513664.1| - 1e-14 54.6 0.1 1.6e-14 54.0 0.1 1.3 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|89256302|ref|YP_513664.1| - 4.3e-09 36.0 0.1 4.6e-09 36.0 0.1 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|89256302|ref|YP_513664.1| - 2.4e-07 31.4 0.0 4.8e-07 30.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|89256302|ref|YP_513664.1| - 9.5e-07 28.8 0.0 1.1e-06 28.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|89256302|ref|YP_513664.1| - 2e-06 27.5 0.0 2.8e-06 27.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_32 PF13679.6 gi|89256302|ref|YP_513664.1| - 4.5e-05 23.5 0.0 5.8e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.14 gi|89256302|ref|YP_513664.1| - 5.6e-05 22.6 0.3 7.2e-05 22.3 0.3 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB MetW PF07021.12 gi|89256302|ref|YP_513664.1| - 0.001 18.7 0.0 0.0014 18.3 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW DREV PF05219.12 gi|89256302|ref|YP_513664.1| - 0.0011 18.2 0.0 0.0013 17.9 0.0 1.1 1 0 0 1 1 1 1 DREV methyltransferase Methyltransf_8 PF05148.15 gi|89256302|ref|YP_513664.1| - 0.0012 18.7 0.0 0.013 15.4 0.0 2.0 1 1 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_18 PF12847.7 gi|89256302|ref|YP_513664.1| - 0.0035 17.3 0.0 0.005 16.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain GidB PF02527.15 gi|89256302|ref|YP_513664.1| - 0.0041 16.5 0.0 0.006 15.9 0.0 1.3 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G NodS PF05401.11 gi|89256302|ref|YP_513664.1| - 0.0072 16.0 0.0 0.0078 15.9 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) AdoMet_MTase PF07757.13 gi|89256302|ref|YP_513664.1| - 0.012 15.9 0.0 0.018 15.3 0.0 1.5 1 0 0 1 1 1 0 Predicted AdoMet-dependent methyltransferase Methyltransf_4 PF02390.17 gi|89256302|ref|YP_513664.1| - 0.11 12.0 0.0 0.16 11.4 0.0 1.3 1 0 0 1 1 1 0 Putative methyltransferase DUF2492 PF10678.9 gi|89256302|ref|YP_513664.1| - 0.12 12.7 0.1 0.41 11.0 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2492) YchF-GTPase_C PF06071.13 gi|89256304|ref|YP_513666.1| - 4.4e-39 132.5 0.1 1.1e-38 131.2 0.1 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF933) MMR_HSR1 PF01926.23 gi|89256304|ref|YP_513666.1| - 2.5e-23 82.3 0.0 5.8e-23 81.2 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|89256304|ref|YP_513666.1| - 5.5e-08 32.5 0.1 1.9e-07 30.7 0.0 1.9 2 0 0 2 2 2 1 Ferrous iron transport protein B Acetyltransf_CG PF14542.6 gi|89256304|ref|YP_513666.1| - 0.039 14.1 0.2 0.11 12.6 0.0 1.8 2 0 0 2 2 2 0 GCN5-related N-acetyl-transferase Pox_D5 PF03288.16 gi|89256304|ref|YP_513666.1| - 0.047 14.2 0.8 0.16 12.5 0.6 2.0 1 1 1 2 2 2 0 Poxvirus D5 protein-like TGS PF02824.21 gi|89256304|ref|YP_513666.1| - 0.058 13.5 0.3 0.25 11.4 0.3 2.1 1 1 0 1 1 1 0 TGS domain Pept_tRNA_hydro PF01195.19 gi|89256305|ref|YP_513667.1| - 8.4e-59 198.4 0.7 9.8e-59 198.1 0.7 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PglD_N PF17836.1 gi|89256305|ref|YP_513667.1| - 0.18 12.5 1.3 5.7 7.7 0.0 2.9 3 0 0 3 3 3 0 PglD N-terminal domain Beta-lactamase2 PF13354.6 gi|89256306|ref|YP_513668.1| - 1.7e-40 138.8 0.1 2.4e-40 138.3 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase enzyme family Beta-lactamase PF00144.24 gi|89256306|ref|YP_513668.1| - 1.1e-08 34.7 0.0 0.00078 18.8 0.0 2.1 1 1 1 2 2 2 2 Beta-lactamase TPM_phosphatase PF04536.14 gi|89256306|ref|YP_513668.1| - 0.08 13.1 0.1 0.89 9.7 0.0 2.2 2 0 0 2 2 2 0 TPM domain Thioredoxin_2 PF13098.6 gi|89256307|ref|YP_513669.1| - 0.00032 21.1 0.0 0.00061 20.2 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin-like domain Chordopox_G3 PF06129.12 gi|89256307|ref|YP_513669.1| - 0.011 16.5 0.2 0.011 16.5 0.2 2.1 3 0 0 3 3 3 0 Chordopoxvirus G3 protein Thioredoxin_4 PF13462.6 gi|89256307|ref|YP_513669.1| - 0.071 13.3 0.4 0.71 10.0 0.2 2.6 2 1 0 2 2 2 0 Thioredoxin TadF PF16964.5 gi|89256307|ref|YP_513669.1| - 0.13 12.0 0.2 6.6 6.4 0.3 2.4 2 0 0 2 2 2 0 Putative tight adherence pilin protein F DiS_P_DiS PF06750.13 gi|89256308|ref|YP_513670.1| - 7.6e-30 102.9 0.3 7.6e-30 102.9 0.3 1.8 2 0 0 2 2 2 1 Bacterial Peptidase A24 N-terminal domain Peptidase_A24 PF01478.18 gi|89256308|ref|YP_513670.1| - 6.9e-24 84.3 10.6 6.9e-24 84.3 10.6 2.3 2 1 0 2 2 2 1 Type IV leader peptidase family Pyr_redox_2 PF07992.14 gi|89256309|ref|YP_513671.1| - 3.1e-52 177.6 0.0 4e-52 177.3 0.0 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|89256309|ref|YP_513671.1| - 2.2e-27 95.5 0.2 4.8e-27 94.4 0.0 1.6 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|89256309|ref|YP_513671.1| - 1.7e-15 57.3 0.4 2.6e-13 50.3 0.1 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|89256309|ref|YP_513671.1| - 7.6e-12 45.1 3.5 9.2e-11 41.5 3.5 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|89256309|ref|YP_513671.1| - 9.4e-07 28.5 0.5 2.1e-06 27.4 0.5 1.6 1 0 0 1 1 1 1 FAD dependent oxidoreductase K_oxygenase PF13434.6 gi|89256309|ref|YP_513671.1| - 4.5e-06 26.0 0.0 1.7e-05 24.2 0.0 1.9 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) Thi4 PF01946.17 gi|89256309|ref|YP_513671.1| - 1.7e-05 24.2 1.2 0.00032 20.0 0.1 2.7 3 0 0 3 3 3 1 Thi4 family GIDA PF01134.22 gi|89256309|ref|YP_513671.1| - 3.3e-05 23.1 2.3 0.009 15.1 0.1 3.8 4 1 0 4 4 4 1 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|89256309|ref|YP_513671.1| - 5.6e-05 22.4 0.0 0.00024 20.3 0.0 2.0 2 0 0 2 2 2 1 FAD binding domain HI0933_like PF03486.14 gi|89256309|ref|YP_513671.1| - 0.00025 19.9 2.4 0.012 14.3 1.3 2.5 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_8 PF13450.6 gi|89256309|ref|YP_513671.1| - 0.0039 17.4 0.6 0.1 12.9 0.2 2.5 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.21 gi|89256309|ref|YP_513671.1| - 0.0064 15.8 0.4 0.68 9.2 0.0 2.3 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.18 gi|89256309|ref|YP_513671.1| - 0.02 14.8 3.9 0.17 11.8 0.0 2.6 3 0 0 3 3 3 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DAO PF01266.24 gi|89256309|ref|YP_513671.1| - 0.022 14.4 0.0 0.022 14.4 0.0 2.0 3 0 0 3 3 3 0 FAD dependent oxidoreductase NAD_binding_9 PF13454.6 gi|89256309|ref|YP_513671.1| - 0.037 14.0 0.5 0.7 9.9 0.0 2.4 2 1 0 2 2 2 0 FAD-NAD(P)-binding FAD_binding_3 PF01494.19 gi|89256309|ref|YP_513671.1| - 0.15 11.3 0.1 1.5 8.0 0.0 2.1 2 0 0 2 2 2 0 FAD binding domain Ion_trans_2 PF07885.16 gi|89256310|ref|YP_513672.1| - 3.2e-14 52.6 8.2 3.2e-14 52.6 8.2 1.8 1 1 1 2 2 2 1 Ion channel Ion_trans PF00520.31 gi|89256310|ref|YP_513672.1| - 2e-08 33.8 4.4 3.7e-08 32.9 4.4 1.4 1 0 0 1 1 1 1 Ion transport protein Bax1-I PF01027.20 gi|89256310|ref|YP_513672.1| - 0.011 15.6 7.3 0.032 14.1 7.3 1.7 1 1 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 DHHC PF01529.20 gi|89256310|ref|YP_513672.1| - 0.011 15.8 5.4 0.011 15.8 5.4 2.2 1 1 1 2 2 2 0 DHHC palmitoyltransferase Oxidored_q4 PF00507.19 gi|89256310|ref|YP_513672.1| - 0.044 13.9 1.8 0.044 13.9 1.8 1.9 2 0 0 2 2 2 0 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Endonuc_subdom PF09062.10 gi|89256310|ref|YP_513672.1| - 0.053 14.3 1.1 0.053 14.3 1.1 2.2 2 0 0 2 2 2 0 PI-PfuI Endonuclease subdomain Ost5 PF05251.12 gi|89256310|ref|YP_513672.1| - 0.055 13.7 2.0 5.9 7.2 0.7 2.6 2 0 0 2 2 2 0 Oligosaccharyltransferase subunit 5 DUF2178 PF09946.9 gi|89256310|ref|YP_513672.1| - 1.6 9.0 8.9 1.6 8.9 0.2 3.2 3 1 0 3 3 3 0 Predicted membrane protein (DUF2178) YesK PF14150.6 gi|89256310|ref|YP_513672.1| - 2.6 8.3 10.5 0.22 11.8 1.6 2.6 2 1 0 2 2 2 0 YesK-like protein PTR2 PF00854.21 gi|89256312|ref|YP_513674.1| - 2.1e-25 89.4 30.4 5e-25 88.2 30.4 1.6 1 1 0 1 1 1 1 POT family MFS_1 PF07690.16 gi|89256312|ref|YP_513674.1| - 2e-19 69.8 60.7 2.8e-15 56.1 35.0 2.8 1 1 1 2 2 2 2 Major Facilitator Superfamily AC_N PF16214.5 gi|89256312|ref|YP_513674.1| - 3.5 6.7 12.1 0.72 8.9 2.3 2.5 2 0 0 2 2 2 0 Adenylyl cyclase N-terminal extracellular and transmembrane region AAA_2 PF07724.14 gi|89256313|ref|YP_513675.1| - 1.5e-51 174.9 2.6 4.7e-43 147.3 0.4 2.6 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA PF00004.29 gi|89256313|ref|YP_513675.1| - 1.5e-15 57.8 3.0 9e-07 29.4 0.1 3.1 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|89256313|ref|YP_513675.1| - 6.1e-07 29.5 0.1 7.1e-05 22.8 0.0 2.7 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) MCM PF00493.23 gi|89256313|ref|YP_513675.1| - 1.1e-06 28.0 0.3 5.6e-05 22.3 0.0 2.4 2 0 0 2 2 2 1 MCM P-loop domain AAA_22 PF13401.6 gi|89256313|ref|YP_513675.1| - 3.2e-06 27.5 0.6 8e-05 22.9 0.0 2.5 1 1 1 2 2 2 1 AAA domain ClpB_D2-small PF10431.9 gi|89256313|ref|YP_513675.1| - 1.5e-05 25.0 3.4 1.5e-05 25.0 0.3 2.7 2 0 0 2 2 2 1 C-terminal, D2-small domain, of ClpB protein Mg_chelatase PF01078.21 gi|89256313|ref|YP_513675.1| - 2.2e-05 23.9 0.3 0.0048 16.3 0.0 3.4 3 1 0 3 3 3 1 Magnesium chelatase, subunit ChlI AAA_16 PF13191.6 gi|89256313|ref|YP_513675.1| - 4.1e-05 24.0 2.6 0.00016 22.1 0.9 2.5 2 1 0 2 2 2 1 AAA ATPase domain RuvB_N PF05496.12 gi|89256313|ref|YP_513675.1| - 0.00021 21.1 0.5 0.025 14.3 0.1 2.6 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain Sigma54_activat PF00158.26 gi|89256313|ref|YP_513675.1| - 0.00048 19.9 0.0 0.019 14.7 0.0 2.5 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_18 PF13238.6 gi|89256313|ref|YP_513675.1| - 0.002 18.7 0.1 0.011 16.3 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|89256313|ref|YP_513675.1| - 0.005 17.0 0.0 0.017 15.3 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.6 gi|89256313|ref|YP_513675.1| - 0.0081 15.8 0.5 0.23 11.0 0.2 2.4 2 0 0 2 2 2 1 AAA domain AAA_7 PF12775.7 gi|89256313|ref|YP_513675.1| - 0.011 15.3 0.0 0.1 12.1 0.0 2.1 2 0 0 2 2 2 0 P-loop containing dynein motor region TniB PF05621.11 gi|89256313|ref|YP_513675.1| - 0.012 15.0 0.2 0.036 13.5 0.0 2.0 2 0 0 2 2 2 0 Bacterial TniB protein IstB_IS21 PF01695.17 gi|89256313|ref|YP_513675.1| - 0.014 15.2 0.1 0.047 13.4 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein Zeta_toxin PF06414.12 gi|89256313|ref|YP_513675.1| - 0.022 14.1 0.0 0.049 12.9 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin AAA_24 PF13479.6 gi|89256313|ref|YP_513675.1| - 0.033 13.9 0.1 0.13 11.9 0.1 2.0 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|89256313|ref|YP_513675.1| - 0.057 13.3 0.0 0.3 11.0 0.0 2.1 2 0 0 2 2 2 0 RsgA GTPase ADSL_C PF10397.9 gi|89256313|ref|YP_513675.1| - 0.077 13.5 0.2 0.077 13.5 0.2 2.8 4 0 0 4 4 2 0 Adenylosuccinate lyase C-terminus TsaE PF02367.17 gi|89256313|ref|YP_513675.1| - 0.095 12.7 0.0 0.29 11.1 0.0 1.8 2 0 0 2 2 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ABC_tran PF00005.27 gi|89256313|ref|YP_513675.1| - 0.11 13.0 0.2 0.49 10.9 0.2 2.1 1 1 0 1 1 1 0 ABC transporter AAA_28 PF13521.6 gi|89256313|ref|YP_513675.1| - 0.12 12.6 0.1 0.12 12.6 0.1 2.5 3 0 0 3 3 3 0 AAA domain NACHT PF05729.12 gi|89256313|ref|YP_513675.1| - 0.13 12.2 0.1 2.8 7.8 0.0 2.3 2 0 0 2 2 2 0 NACHT domain Proteasome PF00227.26 gi|89256314|ref|YP_513676.1| - 5.9e-24 84.6 1.0 9.1e-24 84.0 1.0 1.2 1 0 0 1 1 1 1 Proteasome subunit BPL_LplA_LipB PF03099.19 gi|89256316|ref|YP_513678.1| - 1.5e-06 28.1 0.0 5.2e-06 26.4 0.0 1.9 1 1 0 1 1 1 1 Biotin/lipoate A/B protein ligase family tRNA-synt_1b PF00579.25 gi|89256317|ref|YP_513679.1| - 5.6e-75 252.4 0.3 8.9e-75 251.7 0.3 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) S4 PF01479.25 gi|89256317|ref|YP_513679.1| - 4.8e-08 32.6 0.0 1e-07 31.5 0.0 1.5 1 0 0 1 1 1 1 S4 domain TyrRSs_C PF16714.5 gi|89256317|ref|YP_513679.1| - 0.00013 21.8 0.0 0.00044 20.1 0.0 1.9 2 0 0 2 2 2 1 Tyrosyl-tRNA synthetase C-terminal domain S4_2 PF13275.6 gi|89256317|ref|YP_513679.1| - 0.0002 21.1 0.3 0.00062 19.5 0.1 2.0 2 0 0 2 2 2 1 S4 domain Glucosaminidase PF01832.20 gi|89256317|ref|YP_513679.1| - 0.066 13.7 0.0 0.2 12.2 0.0 1.9 1 1 0 1 1 1 0 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase DDE_3 PF13358.6 gi|89256318|ref|YP_513680.1| - 2.3e-30 105.3 0.1 7.9e-30 103.5 0.0 1.8 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.16 gi|89256318|ref|YP_513680.1| - 0.0029 17.6 1.5 0.0084 16.2 0.6 2.3 2 1 0 2 2 2 1 Transposase HTH_29 PF13551.6 gi|89256318|ref|YP_513680.1| - 0.0033 17.4 0.0 0.008 16.2 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn helix HTH_40 PF14493.6 gi|89256318|ref|YP_513680.1| - 0.0099 16.3 0.1 0.069 13.6 0.0 2.3 3 1 0 3 3 3 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|89256318|ref|YP_513680.1| - 0.026 14.6 0.0 0.073 13.2 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|89256318|ref|YP_513680.1| - 0.12 12.2 0.0 0.34 10.8 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain rve PF00665.26 gi|89256318|ref|YP_513680.1| - 0.15 12.3 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 Integrase core domain DDE_Tnp_ISAZ013 PF07592.11 gi|89256318|ref|YP_513680.1| - 0.17 10.9 0.3 1.1 8.1 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain FMN_dh PF01070.18 gi|89256319|ref|YP_513681.1| - 2.3e-128 428.1 0.0 2.6e-128 427.9 0.0 1.0 1 0 0 1 1 1 1 FMN-dependent dehydrogenase IMPDH PF00478.25 gi|89256319|ref|YP_513681.1| - 5.3e-08 32.3 0.1 1.9e-07 30.4 0.1 1.9 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain Glu_synthase PF01645.17 gi|89256319|ref|YP_513681.1| - 0.00024 20.3 0.1 0.00043 19.5 0.1 1.4 1 0 0 1 1 1 1 Conserved region in glutamate synthase His_biosynth PF00977.21 gi|89256319|ref|YP_513681.1| - 0.055 12.9 0.1 0.12 11.8 0.1 1.6 1 0 0 1 1 1 0 Histidine biosynthesis protein ThiG PF05690.14 gi|89256319|ref|YP_513681.1| - 0.062 12.6 0.3 0.15 11.4 0.0 1.7 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG IGPS PF00218.21 gi|89256319|ref|YP_513681.1| - 0.069 12.3 0.0 0.16 11.1 0.0 1.5 1 0 0 1 1 1 0 Indole-3-glycerol phosphate synthase DHO_dh PF01180.21 gi|89256319|ref|YP_513681.1| - 0.097 11.9 0.1 0.16 11.1 0.1 1.3 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase FAD-oxidase_C PF02913.19 gi|89256320|ref|YP_513682.1| - 2.2e-30 106.1 0.1 3.2e-30 105.6 0.1 1.1 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 gi|89256320|ref|YP_513682.1| - 3.5e-28 98.1 0.0 5.3e-28 97.5 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain DUF2431 PF10354.9 gi|89256320|ref|YP_513682.1| - 0.022 15.0 0.1 4.4 7.5 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF2431) Chrome_Resist PF09828.9 gi|89256320|ref|YP_513682.1| - 0.093 13.2 0.1 0.22 12.0 0.1 1.5 1 0 0 1 1 1 0 Chromate resistance exported protein Chordopox_L2 PF05803.12 gi|89256320|ref|YP_513682.1| - 0.14 12.0 0.5 0.29 11.0 0.5 1.5 1 0 0 1 1 1 0 Chordopoxvirus L2 protein PrmA PF06325.13 gi|89256321|ref|YP_513683.1| - 1.7e-72 244.3 0.7 3.1e-72 243.5 0.7 1.4 1 1 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_31 PF13847.6 gi|89256321|ref|YP_513683.1| - 3e-13 49.8 0.3 7.7e-13 48.5 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.14 gi|89256321|ref|YP_513683.1| - 6.1e-10 38.9 0.4 1.2e-09 38.0 0.1 1.8 2 1 0 2 2 2 1 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|89256321|ref|YP_513683.1| - 1.2e-08 35.6 0.1 8.3e-08 32.8 0.0 2.4 3 0 0 3 3 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|89256321|ref|YP_513683.1| - 2.2e-08 34.8 1.6 1e-07 32.6 0.0 2.6 3 0 0 3 3 3 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|89256321|ref|YP_513683.1| - 8.1e-08 32.3 0.0 2.3e-07 30.8 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|89256321|ref|YP_513683.1| - 2.3e-07 31.4 0.0 3e-06 27.8 0.0 2.4 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|89256321|ref|YP_513683.1| - 0.0014 18.6 0.0 0.0031 17.5 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|89256321|ref|YP_513683.1| - 0.0032 17.1 0.0 0.0079 15.9 0.0 1.6 1 0 0 1 1 1 1 Conserved hypothetical protein 95 PCMT PF01135.19 gi|89256321|ref|YP_513683.1| - 0.0037 17.0 0.1 0.013 15.3 0.1 1.8 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Met_10 PF02475.16 gi|89256321|ref|YP_513683.1| - 0.0053 16.5 0.1 0.011 15.5 0.0 1.6 2 0 0 2 2 2 1 Met-10+ like-protein Methyltransf_32 PF13679.6 gi|89256321|ref|YP_513683.1| - 0.0056 16.7 0.0 0.0098 15.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|89256321|ref|YP_513683.1| - 0.012 15.2 0.0 0.021 14.4 0.0 1.4 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW CMAS PF02353.20 gi|89256321|ref|YP_513683.1| - 0.016 14.5 0.1 0.045 13.0 0.1 1.8 1 1 0 1 1 1 0 Mycolic acid cyclopropane synthetase UPF0020 PF01170.18 gi|89256321|ref|YP_513683.1| - 0.026 14.2 0.4 0.15 11.7 0.4 2.1 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 Methyltransf_9 PF08003.11 gi|89256321|ref|YP_513683.1| - 0.035 13.1 0.0 0.23 10.4 0.0 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF1698) DUF3929 PF13066.6 gi|89256321|ref|YP_513683.1| - 0.061 13.4 0.0 0.15 12.1 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3929) Methyltransf_15 PF09445.10 gi|89256321|ref|YP_513683.1| - 0.09 12.3 0.5 0.24 10.9 0.0 1.9 2 0 0 2 2 2 0 RNA cap guanine-N2 methyltransferase Dus PF01207.17 gi|89256322|ref|YP_513684.1| - 3.3e-95 318.7 0.7 4e-95 318.5 0.7 1.0 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) DHO_dh PF01180.21 gi|89256322|ref|YP_513684.1| - 5e-05 22.7 0.2 0.00087 18.6 0.2 2.1 1 1 0 1 1 1 1 Dihydroorotate dehydrogenase NanE PF04131.14 gi|89256322|ref|YP_513684.1| - 0.00022 20.4 0.8 0.00045 19.5 0.4 1.7 1 1 1 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase His_biosynth PF00977.21 gi|89256322|ref|YP_513684.1| - 0.0012 18.3 0.7 0.0027 17.2 0.7 1.5 1 0 0 1 1 1 1 Histidine biosynthesis protein PEP_mutase PF13714.6 gi|89256322|ref|YP_513684.1| - 0.0015 18.1 0.7 0.0029 17.1 0.7 1.5 1 0 0 1 1 1 1 Phosphoenolpyruvate phosphomutase MR_MLE_C PF13378.6 gi|89256322|ref|YP_513684.1| - 0.0077 15.8 0.5 0.014 15.0 0.5 1.3 1 0 0 1 1 1 1 Enolase C-terminal domain-like RWP-RK PF02042.15 gi|89256322|ref|YP_513684.1| - 0.023 14.6 0.0 4.4 7.4 0.0 2.7 2 0 0 2 2 2 0 RWP-RK domain BKACE PF05853.12 gi|89256322|ref|YP_513684.1| - 0.039 13.2 0.1 0.06 12.6 0.1 1.4 1 0 0 1 1 1 0 beta-keto acid cleavage enzyme Peptidase_U32 PF01136.19 gi|89256322|ref|YP_513684.1| - 0.04 13.1 0.0 0.073 12.2 0.0 1.4 1 0 0 1 1 1 0 Peptidase family U32 N6_Mtase PF02384.16 gi|89256323|ref|YP_513685.1| - 4e-39 134.7 7.9 3.3e-26 92.3 0.2 4.7 2 2 1 3 3 3 3 N-6 DNA Methylase Methylase_S PF01420.19 gi|89256323|ref|YP_513685.1| - 1.1e-13 51.8 5.9 1.1e-13 51.8 5.9 2.3 2 0 0 2 2 2 1 Type I restriction modification DNA specificity domain HSDR_N_2 PF13588.6 gi|89256323|ref|YP_513685.1| - 2.1e-10 40.6 0.0 6.6e-10 39.0 0.0 2.0 1 0 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) UPF0020 PF01170.18 gi|89256323|ref|YP_513685.1| - 9.6e-10 38.5 0.0 2.1e-09 37.4 0.0 1.4 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 MTS PF05175.14 gi|89256323|ref|YP_513685.1| - 0.007 15.9 0.0 0.044 13.3 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase small domain CCCAP PF15964.5 gi|89256323|ref|YP_513685.1| - 0.022 13.1 3.9 0.044 12.1 3.9 1.4 1 0 0 1 1 1 0 Centrosomal colon cancer autoantigen protein family GCFC PF07842.12 gi|89256323|ref|YP_513685.1| - 0.039 13.6 0.1 0.091 12.4 0.1 1.6 1 0 0 1 1 1 0 GC-rich sequence DNA-binding factor-like protein DUF559 PF04480.12 gi|89256324|ref|YP_513686.1| - 2.1e-28 98.4 0.2 2.5e-28 98.1 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF559) MTES_1575 PF18741.1 gi|89256324|ref|YP_513686.1| - 3.4e-05 23.9 0.2 5.3e-05 23.3 0.1 1.3 1 1 0 1 1 1 1 REase_MTES_1575 SMC_N PF02463.19 gi|89256325|ref|YP_513687.1| - 1.9e-08 34.0 1.3 2.6e-08 33.6 1.3 1.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|89256325|ref|YP_513687.1| - 5e-08 33.0 10.7 6.4e-08 32.7 10.7 1.1 1 0 0 1 1 1 1 AAA ATPase domain AAA_21 PF13304.6 gi|89256325|ref|YP_513687.1| - 2.5e-06 27.6 0.7 3.1e-06 27.2 0.7 1.2 1 0 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|89256325|ref|YP_513687.1| - 0.0023 18.5 2.6 0.0028 18.2 2.6 1.2 1 0 0 1 1 1 1 AAA domain Hat1_N PF10394.9 gi|89256325|ref|YP_513687.1| - 0.019 15.2 0.8 0.026 14.8 0.8 1.3 1 0 0 1 1 1 0 Histone acetyl transferase HAT1 N-terminus BNR_assoc_N PF14873.6 gi|89256325|ref|YP_513687.1| - 0.023 14.4 0.0 1.7 8.3 0.0 2.0 1 1 1 2 2 2 0 N-terminal domain of BNR-repeat neuraminidase Nab2 PF11517.8 gi|89256325|ref|YP_513687.1| - 0.031 14.5 0.0 0.036 14.4 0.0 1.1 1 0 0 1 1 1 0 Nuclear abundant poly(A) RNA-bind protein 2 (Nab2) AAA_29 PF13555.6 gi|89256325|ref|YP_513687.1| - 0.032 14.0 0.0 0.054 13.2 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF2813 PF11398.8 gi|89256325|ref|YP_513687.1| - 0.037 13.3 0.2 0.039 13.2 0.2 1.2 1 1 0 1 1 1 0 Protein of unknown function (DUF2813) ABC_tran PF00005.27 gi|89256325|ref|YP_513687.1| - 0.11 13.0 0.0 0.12 12.9 0.0 1.3 1 1 0 1 1 1 0 ABC transporter CAT PF00302.18 gi|89256326|ref|YP_513688.1| - 0.047 13.6 0.5 0.057 13.3 0.5 1.1 1 0 0 1 1 1 0 Chloramphenicol acetyltransferase AAA_21 PF13304.6 gi|89256327|ref|YP_513689.1| - 7e-14 52.3 2.2 1.1e-13 51.7 0.1 2.2 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|89256327|ref|YP_513689.1| - 2.8e-10 40.0 0.2 1.2e-09 38.0 0.2 2.1 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain Toprim_2 PF13155.6 gi|89256327|ref|YP_513689.1| - 0.015 15.7 0.8 0.051 14.0 0.1 2.3 2 1 0 2 2 2 0 Toprim-like IMS PF00817.20 gi|89256328|ref|YP_513690.1| - 1.7e-50 170.9 0.0 3.1e-50 170.1 0.0 1.4 1 0 0 1 1 1 1 impB/mucB/samB family IMS_HHH PF11798.8 gi|89256328|ref|YP_513690.1| - 1.9e-07 31.0 0.2 4.9e-06 26.6 0.0 3.0 3 0 0 3 3 3 1 IMS family HHH motif IMS_C PF11799.8 gi|89256328|ref|YP_513690.1| - 1.4e-05 25.8 0.1 2.6e-05 24.9 0.1 1.4 1 0 0 1 1 1 1 impB/mucB/samB family C-terminal domain DJ-1_PfpI PF01965.24 gi|89256329|ref|YP_513691.1| - 1.3e-18 67.4 0.0 1.6e-18 67.0 0.0 1.1 1 0 0 1 1 1 1 DJ-1/PfpI family PH_3 PF14593.6 gi|89256329|ref|YP_513691.1| - 0.098 12.8 0.0 0.29 11.3 0.0 1.7 2 0 0 2 2 2 0 PH domain Ribonuc_red_sm PF00268.21 gi|89256330|ref|YP_513692.1| - 1.3e-70 238.0 1.2 1.7e-70 237.7 1.2 1.1 1 0 0 1 1 1 1 Ribonucleotide reductase, small chain Glutaredoxin PF00462.24 gi|89256330|ref|YP_513692.1| - 1.7e-10 40.9 0.1 6.5e-10 39.1 0.0 2.0 2 0 0 2 2 2 1 Glutaredoxin DUF836 PF05768.14 gi|89256330|ref|YP_513692.1| - 0.051 14.0 0.0 1.8 9.0 0.0 2.8 2 0 0 2 2 2 0 Glutaredoxin-like domain (DUF836) DUF2391 PF09622.10 gi|89256330|ref|YP_513692.1| - 0.18 11.1 0.0 0.25 10.6 0.0 1.1 1 0 0 1 1 1 0 Putative integral membrane protein (DUF2391) Glutaredoxin PF00462.24 gi|89256331|ref|YP_513693.1| - 6.7e-16 58.3 0.1 8.6e-16 57.9 0.1 1.1 1 0 0 1 1 1 1 Glutaredoxin Thioredoxin_3 PF13192.6 gi|89256331|ref|YP_513693.1| - 0.0011 18.9 0.1 0.0029 17.6 0.1 1.8 1 1 0 1 1 1 1 Thioredoxin domain SH3BGR PF04908.15 gi|89256331|ref|YP_513693.1| - 0.005 17.0 0.1 0.007 16.5 0.1 1.1 1 0 0 1 1 1 1 SH3-binding, glutamic acid-rich protein Thioredoxin_7 PF13899.6 gi|89256331|ref|YP_513693.1| - 0.12 12.5 0.0 0.15 12.3 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin-like Ribonuc_red_lgC PF02867.15 gi|89256332|ref|YP_513694.1| - 6.4e-105 351.7 0.0 1.6e-68 231.5 0.0 2.1 1 1 1 2 2 2 2 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.21 gi|89256332|ref|YP_513694.1| - 7.7e-08 32.2 0.1 1.8e-07 31.1 0.1 1.7 1 0 0 1 1 1 1 Ribonucleotide reductase, all-alpha domain Carbpep_Y_N PF05388.11 gi|89256332|ref|YP_513694.1| - 0.019 15.5 0.1 0.045 14.3 0.1 1.6 1 0 0 1 1 1 0 Carboxypeptidase Y pro-peptide Ldh_1_N PF00056.23 gi|89256333|ref|YP_513695.1| - 8.9e-43 145.8 1.7 1.4e-42 145.1 0.9 1.7 2 0 0 2 2 2 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.18 gi|89256333|ref|YP_513695.1| - 2.4e-27 95.9 0.2 3.3e-27 95.5 0.2 1.1 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain Glyco_hydro_4 PF02056.16 gi|89256333|ref|YP_513695.1| - 0.0022 17.6 3.2 0.013 15.0 0.2 2.6 2 1 1 3 3 3 2 Family 4 glycosyl hydrolase Glyco_hydro_4C PF11975.8 gi|89256333|ref|YP_513695.1| - 0.0028 17.8 0.0 0.0066 16.5 0.0 1.4 1 1 0 1 1 1 1 Family 4 glycosyl hydrolase C-terminal domain UDPG_MGDP_dh_N PF03721.14 gi|89256333|ref|YP_513695.1| - 0.0054 16.3 0.6 0.069 12.7 0.6 2.2 1 1 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Ribosom_S12_S23 PF00164.25 gi|89256333|ref|YP_513695.1| - 0.17 11.5 0.6 0.88 9.2 0.1 2.3 2 1 1 3 3 3 0 Ribosomal protein S12/S23 3HCDH_N PF02737.18 gi|89256333|ref|YP_513695.1| - 0.27 11.1 3.1 2.6 7.9 0.5 3.0 3 1 0 3 3 3 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DUF5336 PF17270.2 gi|89256334|ref|YP_513696.1| - 5.3 6.6 15.6 0.13 11.9 2.1 2.9 2 1 1 3 3 3 0 Family of unknown function (DUF5336) CPP1-like PF11833.8 gi|89256334|ref|YP_513696.1| - 5.8 6.5 13.6 0.42 10.2 6.6 2.2 1 1 1 2 2 2 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like COQ7 PF03232.13 gi|89256335|ref|YP_513697.1| - 1.7e-36 125.6 0.0 2e-36 125.4 0.0 1.1 1 0 0 1 1 1 1 Ubiquinone biosynthesis protein COQ7 Ferritin PF00210.24 gi|89256335|ref|YP_513697.1| - 8.7e-05 22.5 0.1 0.00021 21.2 0.1 1.7 1 1 0 1 1 1 1 Ferritin-like domain Rubrerythrin PF02915.17 gi|89256335|ref|YP_513697.1| - 0.00011 22.6 0.1 0.00032 21.1 0.0 1.8 1 1 0 1 1 1 1 Rubrerythrin DUF455 PF04305.14 gi|89256335|ref|YP_513697.1| - 0.068 12.7 0.4 1.8 8.1 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF455) SLT PF01464.20 gi|89256336|ref|YP_513698.1| - 7.8e-11 41.7 1.8 1.1e-10 41.2 1.8 1.2 1 0 0 1 1 1 1 Transglycosylase SLT domain Phage_lysozyme2 PF18013.1 gi|89256336|ref|YP_513698.1| - 4.5e-05 23.5 1.0 7.2e-05 22.8 0.9 1.4 1 1 0 1 1 1 1 Phage tail lysozyme DUF1402 PF07182.11 gi|89256336|ref|YP_513698.1| - 0.018 14.2 0.6 0.026 13.6 0.3 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1402) UPF0020 PF01170.18 gi|89256336|ref|YP_513698.1| - 0.073 12.7 0.3 0.27 10.9 0.1 1.8 1 1 1 2 2 2 0 Putative RNA methylase family UPF0020 ThiF PF00899.21 gi|89256337|ref|YP_513699.1| - 7.6e-26 91.0 0.2 8.9e-26 90.7 0.2 1.0 1 0 0 1 1 1 1 ThiF family ApbA PF02558.16 gi|89256337|ref|YP_513699.1| - 0.0037 16.9 2.5 0.033 13.8 0.1 2.1 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA ELFV_dehydrog PF00208.21 gi|89256337|ref|YP_513699.1| - 0.0042 16.8 0.1 0.0044 16.8 0.1 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|89256337|ref|YP_513699.1| - 0.016 15.5 0.2 0.02 15.2 0.2 1.3 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Shikimate_DH PF01488.20 gi|89256337|ref|YP_513699.1| - 0.019 15.1 0.2 0.027 14.5 0.2 1.3 1 1 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase PglD_N PF17836.1 gi|89256337|ref|YP_513699.1| - 0.051 14.2 0.2 0.063 13.9 0.2 1.3 1 0 0 1 1 1 0 PglD N-terminal domain Cons_hypoth95 PF03602.15 gi|89256337|ref|YP_513699.1| - 0.068 12.8 0.0 0.068 12.8 0.0 1.1 1 0 0 1 1 1 0 Conserved hypothetical protein 95 NAD_binding_7 PF13241.6 gi|89256337|ref|YP_513699.1| - 0.12 12.8 0.1 0.16 12.5 0.1 1.3 1 0 0 1 1 1 0 Putative NAD(P)-binding LIP PF03583.14 gi|89256338|ref|YP_513700.1| - 0.0036 16.7 0.1 0.0081 15.5 0.1 1.5 1 0 0 1 1 1 1 Secretory lipase Hydrolase_4 PF12146.8 gi|89256338|ref|YP_513700.1| - 0.066 12.5 0.0 0.82 8.9 0.0 2.1 2 0 0 2 2 2 0 Serine aminopeptidase, S33 HAD_2 PF13419.6 gi|89256339|ref|YP_513701.1| - 4.9e-26 91.9 0.4 5.5e-26 91.7 0.4 1.0 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|89256339|ref|YP_513701.1| - 1.8e-09 38.2 0.0 1.4e-06 28.7 0.0 2.1 1 1 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|89256339|ref|YP_513701.1| - 0.0027 18.1 0.0 0.0069 16.8 0.0 1.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.12 gi|89256339|ref|YP_513701.1| - 0.0089 15.4 0.3 0.011 15.1 0.3 1.1 1 0 0 1 1 1 1 Putative Phosphatase Glyco_transf_8C PF08437.10 gi|89256339|ref|YP_513701.1| - 0.13 12.4 0.1 0.2 11.7 0.1 1.3 1 0 0 1 1 1 0 Glycosyl transferase family 8 C-terminal AhpC-TSA PF00578.21 gi|89256340|ref|YP_513702.1| - 5.6e-29 100.6 0.0 7.2e-29 100.2 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|89256340|ref|YP_513702.1| - 8.9e-17 61.2 0.0 1.1e-16 60.9 0.0 1.1 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.9 gi|89256340|ref|YP_513702.1| - 1.2e-13 50.6 0.0 2.7e-13 49.5 0.0 1.6 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin Thioredoxin_8 PF13905.6 gi|89256340|ref|YP_513702.1| - 0.11 12.8 0.0 0.18 12.1 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin-like PhnA PF03831.14 gi|89256343|ref|YP_513705.1| - 1.4e-16 60.1 1.2 1.8e-16 59.7 1.2 1.2 1 0 0 1 1 1 1 PhnA domain PhnA_Zn_Ribbon PF08274.12 gi|89256343|ref|YP_513705.1| - 2.7e-15 56.0 3.4 4.7e-15 55.2 3.4 1.4 1 0 0 1 1 1 1 PhnA Zinc-Ribbon A2L_zn_ribbon PF08792.10 gi|89256343|ref|YP_513705.1| - 5e-05 22.9 0.8 0.0001 21.9 0.8 1.4 1 0 0 1 1 1 1 A2L zinc ribbon domain DUF2318 PF10080.9 gi|89256343|ref|YP_513705.1| - 0.0005 20.1 0.4 0.00054 20.0 0.4 1.3 1 1 0 1 1 1 1 Predicted membrane protein (DUF2318) UPF0547 PF10571.9 gi|89256343|ref|YP_513705.1| - 0.00064 19.8 0.1 0.00064 19.8 0.1 1.6 2 0 0 2 2 2 1 Uncharacterised protein family UPF0547 TF_Zn_Ribbon PF08271.12 gi|89256343|ref|YP_513705.1| - 0.00069 19.1 0.4 0.0011 18.4 0.4 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.11 gi|89256343|ref|YP_513705.1| - 0.0011 18.9 0.2 0.0022 17.9 0.1 1.6 2 0 0 2 2 2 1 Putative transposase DNA-binding domain HypA PF01155.19 gi|89256343|ref|YP_513705.1| - 0.0095 16.0 0.2 0.014 15.4 0.2 1.2 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Prok-RING_1 PF14446.6 gi|89256343|ref|YP_513705.1| - 0.021 14.8 0.2 0.035 14.0 0.2 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 TFIIS_C PF01096.18 gi|89256343|ref|YP_513705.1| - 0.023 14.6 1.1 5 7.1 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DNA_RNApol_7kD PF03604.13 gi|89256343|ref|YP_513705.1| - 0.043 13.5 0.5 0.098 12.4 0.5 1.6 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit DUF4860 PF16152.5 gi|89256343|ref|YP_513705.1| - 0.072 12.9 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4860) NOB1_Zn_bind PF08772.11 gi|89256343|ref|YP_513705.1| - 0.1 12.8 0.7 0.54 10.5 0.2 1.9 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like DUF4802 PF16060.5 gi|89256343|ref|YP_513705.1| - 0.12 12.6 2.7 0.32 11.2 2.7 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4802) zinc_ribbon_2 PF13240.6 gi|89256343|ref|YP_513705.1| - 0.24 11.2 2.0 0.83 9.5 2.0 1.9 1 1 0 1 1 1 0 zinc-ribbon domain ETRAMP PF09716.10 gi|89256344|ref|YP_513706.1| - 0.017 15.2 0.2 0.018 15.1 0.2 1.1 1 0 0 1 1 1 0 Malarial early transcribed membrane protein (ETRAMP) DUF3139 PF11337.8 gi|89256344|ref|YP_513706.1| - 0.028 15.1 1.3 0.032 14.9 1.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3139) BioW PF03744.13 gi|89256345|ref|YP_513707.1| - 0.0093 15.5 0.0 0.012 15.2 0.0 1.2 1 0 0 1 1 1 1 6-carboxyhexanoate--CoA ligase RNase_T PF00929.24 gi|89256347|ref|YP_513709.1| - 4.5e-33 115.1 0.1 6.1e-33 114.7 0.1 1.2 1 0 0 1 1 1 1 Exonuclease RNase_H_2 PF13482.6 gi|89256347|ref|YP_513709.1| - 0.00042 20.4 0.8 0.003 17.6 0.8 2.0 1 1 0 1 1 1 1 RNase_H superfamily DUF5051 PF16473.5 gi|89256347|ref|YP_513709.1| - 0.0062 16.5 1.1 0.023 14.7 1.1 1.9 1 1 0 1 1 1 1 3' exoribonuclease, RNase T-like VanY PF02557.17 gi|89256348|ref|YP_513710.1| - 3.3e-42 143.4 0.1 3.9e-42 143.2 0.1 1.1 1 0 0 1 1 1 1 D-alanyl-D-alanine carboxypeptidase Peptidase_M15_3 PF08291.11 gi|89256348|ref|YP_513710.1| - 0.012 15.6 0.0 0.63 10.2 0.0 2.2 2 0 0 2 2 2 0 Peptidase M15 Peptidase_M15_4 PF13539.6 gi|89256348|ref|YP_513710.1| - 0.046 14.2 0.0 0.11 13.0 0.0 1.7 2 0 0 2 2 2 0 D-alanyl-D-alanine carboxypeptidase Prophage_tail PF06605.11 gi|89256348|ref|YP_513710.1| - 0.082 12.1 0.1 0.096 11.9 0.1 1.1 1 0 0 1 1 1 0 Prophage endopeptidase tail CRISPR_assoc PF08798.11 gi|89256348|ref|YP_513710.1| - 0.082 13.0 0.0 0.16 12.1 0.0 1.4 1 1 1 2 2 2 0 CRISPR associated protein Aldedh PF00171.22 gi|89256350|ref|YP_513712.1| - 1.1e-30 106.6 0.0 1.2e-30 106.5 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family Trns_repr_metal PF02583.17 gi|89256351|ref|YP_513713.1| - 5.9e-25 87.4 6.6 6.5e-25 87.3 6.6 1.0 1 0 0 1 1 1 1 Metal-sensitive transcriptional repressor FlgM PF04316.13 gi|89256351|ref|YP_513713.1| - 0.017 15.5 0.8 3.9 7.9 0.1 2.2 2 1 0 2 2 2 0 Anti-sigma-28 factor, FlgM DUF679 PF05078.12 gi|89256351|ref|YP_513713.1| - 0.1 12.6 0.1 0.11 12.5 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF679) DAPDH_C PF16654.5 gi|89256351|ref|YP_513713.1| - 0.12 12.2 0.2 0.14 12.0 0.2 1.1 1 0 0 1 1 1 0 Diaminopimelic acid dehydrogenase C-terminal domain Glutaredoxin PF00462.24 gi|89256352|ref|YP_513714.1| - 6.6e-07 29.5 0.1 1.2e-06 28.6 0.1 1.4 1 0 0 1 1 1 1 Glutaredoxin MauE PF07291.11 gi|89256352|ref|YP_513714.1| - 4.6e-05 23.3 6.2 8e-05 22.5 6.2 1.3 1 0 0 1 1 1 1 Methylamine utilisation protein MauE Thioredoxin_3 PF13192.6 gi|89256352|ref|YP_513714.1| - 0.012 15.7 0.1 0.024 14.7 0.1 1.5 1 1 0 1 1 1 0 Thioredoxin domain AFT PF08731.11 gi|89256352|ref|YP_513714.1| - 0.036 14.5 0.0 0.065 13.6 0.0 1.4 1 0 0 1 1 1 0 Transcription factor AFT DUF4191 PF13829.6 gi|89256352|ref|YP_513714.1| - 0.74 9.1 6.9 0.63 9.3 0.7 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4191) RseC_MucC PF04246.12 gi|89256352|ref|YP_513714.1| - 3.7 7.5 16.2 0.54 10.2 5.7 2.2 2 0 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC LysR_substrate PF03466.20 gi|89256353|ref|YP_513715.1| - 6.4e-34 117.1 0.0 8.6e-34 116.7 0.0 1.1 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 gi|89256353|ref|YP_513715.1| - 2e-13 50.1 0.0 3.3e-13 49.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family FrhB_FdhB_N PF04422.13 gi|89256353|ref|YP_513715.1| - 0.055 13.6 0.0 0.25 11.5 0.0 2.1 2 0 0 2 2 2 0 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Redoxin PF08534.10 gi|89256354|ref|YP_513716.1| - 4.1e-26 91.5 0.0 4.9e-26 91.2 0.0 1.1 1 0 0 1 1 1 1 Redoxin AhpC-TSA PF00578.21 gi|89256354|ref|YP_513716.1| - 1.4e-10 41.2 0.0 1.5e-10 41.1 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family adh_short_C2 PF13561.6 gi|89256355|ref|YP_513717.1| - 2.1e-14 53.6 0.5 1.4e-13 50.9 0.5 1.9 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|89256355|ref|YP_513717.1| - 4.8e-12 45.7 3.4 1.3e-10 41.1 3.4 2.0 1 1 0 1 1 1 1 short chain dehydrogenase Epimerase PF01370.21 gi|89256355|ref|YP_513717.1| - 3.4e-07 30.0 0.1 5.7e-07 29.2 0.1 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family KR PF08659.10 gi|89256355|ref|YP_513717.1| - 4.4e-05 23.5 0.5 0.011 15.7 0.5 2.2 1 1 0 1 1 1 1 KR domain RmlD_sub_bind PF04321.17 gi|89256355|ref|YP_513717.1| - 0.00021 20.5 0.0 0.00042 19.5 0.0 1.5 2 1 0 2 2 2 1 RmlD substrate binding domain NAD_binding_10 PF13460.6 gi|89256355|ref|YP_513717.1| - 0.014 15.3 0.0 0.026 14.4 0.0 1.5 1 0 0 1 1 1 0 NAD(P)H-binding DapB_N PF01113.20 gi|89256355|ref|YP_513717.1| - 0.016 15.3 0.1 0.033 14.3 0.1 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus ESP PF16590.5 gi|89256355|ref|YP_513717.1| - 0.024 14.9 0.0 0.037 14.3 0.0 1.3 1 0 0 1 1 1 0 Exocrine gland-secreting peptide Cytidylate_kin PF02224.18 gi|89256356|ref|YP_513718.1| - 4.1e-73 245.6 0.4 4.6e-73 245.4 0.4 1.0 1 0 0 1 1 1 1 Cytidylate kinase Cytidylate_kin2 PF13189.6 gi|89256356|ref|YP_513718.1| - 4.2e-06 27.0 0.1 9.5e-06 25.9 0.1 1.6 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.6 gi|89256356|ref|YP_513718.1| - 5.5e-06 27.0 0.1 1.4e-05 25.6 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|89256356|ref|YP_513718.1| - 4.1e-05 24.0 0.2 0.00088 19.7 0.2 2.2 1 1 0 1 1 1 1 AAA domain ABC_tran PF00005.27 gi|89256356|ref|YP_513718.1| - 0.00071 20.1 0.0 0.0012 19.4 0.0 1.6 1 1 0 1 1 1 1 ABC transporter ATP_bind_2 PF03668.15 gi|89256356|ref|YP_513718.1| - 0.0027 17.0 0.3 0.085 12.1 0.0 2.2 2 1 0 2 2 2 1 P-loop ATPase protein family SKI PF01202.22 gi|89256356|ref|YP_513718.1| - 0.0031 17.7 0.2 2.8 8.1 0.0 2.3 2 0 0 2 2 2 2 Shikimate kinase dNK PF01712.19 gi|89256356|ref|YP_513718.1| - 0.0096 15.8 0.1 0.022 14.6 0.0 1.6 2 0 0 2 2 2 1 Deoxynucleoside kinase AAA PF00004.29 gi|89256356|ref|YP_513718.1| - 0.011 16.2 0.0 0.019 15.4 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ADK PF00406.22 gi|89256356|ref|YP_513718.1| - 0.016 15.3 0.0 0.055 13.6 0.0 1.8 1 1 1 2 2 2 0 Adenylate kinase AAA_22 PF13401.6 gi|89256356|ref|YP_513718.1| - 0.019 15.2 0.0 0.047 14.0 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|89256356|ref|YP_513718.1| - 0.032 14.6 0.0 0.041 14.3 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain Rad17 PF03215.15 gi|89256356|ref|YP_513718.1| - 0.033 14.1 0.0 0.058 13.3 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain RsgA_GTPase PF03193.16 gi|89256356|ref|YP_513718.1| - 0.045 13.6 0.0 0.094 12.6 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_14 PF13173.6 gi|89256356|ref|YP_513718.1| - 0.046 13.8 0.0 0.11 12.5 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|89256356|ref|YP_513718.1| - 0.048 13.9 0.0 0.56 10.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|89256356|ref|YP_513718.1| - 0.098 12.8 0.0 0.18 12.0 0.0 1.6 1 1 0 1 1 1 0 AAA domain Aminotran_5 PF00266.19 gi|89256357|ref|YP_513719.1| - 4e-36 124.8 0.1 4.8e-36 124.5 0.1 1.1 1 0 0 1 1 1 1 Aminotransferase class-V DUF3091 PF11291.8 gi|89256357|ref|YP_513719.1| - 0.00065 19.8 2.2 0.76 10.0 0.0 3.6 3 1 0 3 3 3 2 Protein of unknown function (DUF3091) DDE_3 PF13358.6 gi|89256359|ref|YP_513721.1| - 2.3e-30 105.3 0.1 7.9e-30 103.5 0.0 1.8 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.16 gi|89256359|ref|YP_513721.1| - 0.0029 17.6 1.5 0.0084 16.2 0.6 2.3 2 1 0 2 2 2 1 Transposase HTH_29 PF13551.6 gi|89256359|ref|YP_513721.1| - 0.0033 17.4 0.0 0.008 16.2 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn helix HTH_40 PF14493.6 gi|89256359|ref|YP_513721.1| - 0.0099 16.3 0.1 0.069 13.6 0.0 2.3 3 1 0 3 3 3 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|89256359|ref|YP_513721.1| - 0.026 14.6 0.0 0.073 13.2 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|89256359|ref|YP_513721.1| - 0.12 12.2 0.0 0.34 10.8 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain rve PF00665.26 gi|89256359|ref|YP_513721.1| - 0.15 12.3 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 Integrase core domain DDE_Tnp_ISAZ013 PF07592.11 gi|89256359|ref|YP_513721.1| - 0.17 10.9 0.3 1.1 8.1 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain His_Phos_2 PF00328.22 gi|89256360|ref|YP_513722.1| - 1e-09 38.2 0.1 6.9e-07 28.9 0.0 2.8 1 1 1 2 2 2 2 Histidine phosphatase superfamily (branch 2) BRCT PF00533.26 gi|89256360|ref|YP_513722.1| - 0.11 12.8 0.1 0.93 9.9 0.0 2.5 4 0 0 4 4 4 0 BRCA1 C Terminus (BRCT) domain Coprogen_oxidas PF01218.18 gi|89256361|ref|YP_513723.1| - 6.7e-128 425.5 0.5 7.6e-128 425.4 0.5 1.0 1 0 0 1 1 1 1 Coproporphyrinogen III oxidase DDE_Tnp_1_2 PF13586.6 gi|89256362|ref|YP_513724.1| - 2.5e-13 50.2 0.0 5.1e-13 49.2 0.0 1.6 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|89256362|ref|YP_513724.1| - 1.6e-10 41.0 2.0 1.6e-10 41.0 2.0 2.4 2 1 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 gi|89256362|ref|YP_513724.1| - 6.4e-08 32.8 0.5 3.2e-07 30.5 0.0 2.1 2 1 0 2 2 2 1 Transposase DDE domain Pilin PF00114.19 gi|89256362|ref|YP_513724.1| - 0.0022 18.9 0.2 0.0058 17.5 0.0 1.7 2 0 0 2 2 2 1 Pilin (bacterial filament) DUF4096 PF13340.6 gi|89256362|ref|YP_513724.1| - 0.012 15.8 0.0 0.022 14.9 0.0 1.5 1 0 0 1 1 1 0 Putative transposase of IS4/5 family (DUF4096) Ribosomal_S6 PF01250.17 gi|89256363|ref|YP_513725.1| - 9.5e-25 86.7 0.0 1.2e-24 86.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S6 Yuri_gagarin PF15934.5 gi|89256363|ref|YP_513725.1| - 0.019 14.8 0.1 0.051 13.4 0.0 1.6 2 0 0 2 2 2 0 Yuri gagarin SERTA PF06031.13 gi|89256363|ref|YP_513725.1| - 0.048 13.3 0.3 0.15 11.8 0.1 1.9 2 0 0 2 2 2 0 SERTA motif Ribosomal_S18 PF01084.20 gi|89256364|ref|YP_513726.1| - 1.9e-26 92.0 0.1 2.3e-26 91.7 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S18 Ribosomal_L9_N PF01281.19 gi|89256365|ref|YP_513727.1| - 1.9e-23 81.8 0.5 3.4e-23 80.9 0.5 1.5 1 0 0 1 1 1 1 Ribosomal protein L9, N-terminal domain Ribosomal_L9_C PF03948.14 gi|89256365|ref|YP_513727.1| - 2.1e-23 82.6 3.1 2.1e-23 82.6 3.1 1.6 2 0 0 2 2 2 1 Ribosomal protein L9, C-terminal domain DUF3138 PF11336.8 gi|89256365|ref|YP_513727.1| - 0.0079 14.9 0.4 0.0087 14.7 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3138) DnaB_C PF03796.15 gi|89256366|ref|YP_513728.1| - 4.3e-108 360.5 0.4 4.3e-108 360.5 0.4 1.5 2 0 0 2 2 2 1 DnaB-like helicase C terminal domain DnaB PF00772.21 gi|89256366|ref|YP_513728.1| - 3.3e-30 104.2 0.9 6.1e-30 103.3 0.9 1.5 1 0 0 1 1 1 1 DnaB-like helicase N terminal domain AAA_25 PF13481.6 gi|89256366|ref|YP_513728.1| - 1.4e-11 44.4 0.0 2.4e-11 43.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain ATPase PF06745.13 gi|89256366|ref|YP_513728.1| - 8.4e-05 22.0 0.9 0.0013 18.1 0.0 2.8 2 2 2 4 4 4 1 KaiC PhoU PF01895.19 gi|89256366|ref|YP_513728.1| - 0.011 16.1 1.0 0.87 10.1 0.1 3.4 3 0 0 3 3 3 0 PhoU domain TPP_enzyme_M PF00205.22 gi|89256366|ref|YP_513728.1| - 0.087 12.6 0.0 0.16 11.7 0.0 1.4 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, central domain Radical_SAM PF04055.21 gi|89256367|ref|YP_513729.1| - 3.7e-17 63.2 0.0 1e-16 61.8 0.0 1.8 1 1 1 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|89256367|ref|YP_513729.1| - 4.4e-06 26.8 0.0 0.0005 20.2 0.0 2.4 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|89256367|ref|YP_513729.1| - 0.035 14.4 0.2 0.21 11.9 0.0 2.2 2 0 0 2 2 2 0 4Fe-4S single cluster domain ANAPC3 PF12895.7 gi|89256368|ref|YP_513730.1| - 7.8e-07 29.2 14.0 8.3e-05 22.7 5.0 3.2 2 1 2 4 4 4 3 Anaphase-promoting complex, cyclosome, subunit 3 TPR_12 PF13424.6 gi|89256368|ref|YP_513730.1| - 3e-06 27.4 8.7 2.2e-05 24.7 0.3 3.6 2 1 1 3 3 3 1 Tetratricopeptide repeat TPR_19 PF14559.6 gi|89256368|ref|YP_513730.1| - 0.00035 21.0 12.5 0.0004 20.8 2.5 4.2 3 1 2 5 5 5 3 Tetratricopeptide repeat TPR_15 PF13429.6 gi|89256368|ref|YP_513730.1| - 0.0051 16.1 8.6 0.7 9.0 3.6 2.8 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_2 PF07719.17 gi|89256368|ref|YP_513730.1| - 0.049 13.8 0.2 0.049 13.8 0.2 5.8 5 1 1 6 6 6 0 Tetratricopeptide repeat TPR_6 PF13174.6 gi|89256368|ref|YP_513730.1| - 0.15 12.8 13.6 0.18 12.5 0.6 4.6 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_16 PF13432.6 gi|89256368|ref|YP_513730.1| - 0.44 11.2 0.1 0.44 11.2 0.1 3.2 3 1 2 5 5 4 0 Tetratricopeptide repeat TPR_7 PF13176.6 gi|89256368|ref|YP_513730.1| - 1.8 8.7 7.2 6.3 7.1 0.1 4.0 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_17 PF13431.6 gi|89256368|ref|YP_513730.1| - 4.1 8.0 15.1 0.77 10.3 0.9 4.2 5 0 0 5 5 5 0 Tetratricopeptide repeat TPR_8 PF13181.6 gi|89256368|ref|YP_513730.1| - 5.8 7.4 25.8 8.5 6.9 0.3 6.3 5 1 1 6 6 6 0 Tetratricopeptide repeat TPR_14 PF13428.6 gi|89256368|ref|YP_513730.1| - 6.5 7.9 8.0 25 6.0 0.6 4.2 2 1 3 5 5 5 0 Tetratricopeptide repeat PseudoU_synth_2 PF00849.22 gi|89256369|ref|YP_513731.1| - 1.2e-19 70.9 0.0 4.8e-19 69.0 0.0 1.9 1 1 0 1 1 1 1 RNA pseudouridylate synthase S4 PF01479.25 gi|89256369|ref|YP_513731.1| - 5.2e-13 48.5 0.2 1.3e-12 47.3 0.2 1.7 1 0 0 1 1 1 1 S4 domain T2SSB PF16537.5 gi|89256370|ref|YP_513732.1| - 0.011 15.3 0.0 0.022 14.3 0.0 1.4 1 0 0 1 1 1 0 Type II secretion system protein B Acetyltransf_1 PF00583.25 gi|89256371|ref|YP_513733.1| - 3.7e-12 46.5 0.0 4.6e-12 46.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family FR47 PF08445.10 gi|89256371|ref|YP_513733.1| - 5.7e-09 35.8 0.0 7.1e-09 35.5 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_10 PF13673.7 gi|89256371|ref|YP_513733.1| - 1.9e-07 31.1 0.0 2.4e-07 30.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|89256371|ref|YP_513733.1| - 1.3e-05 25.5 0.0 1.8e-05 25.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|89256371|ref|YP_513733.1| - 0.0022 17.7 0.0 0.0035 17.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|89256371|ref|YP_513733.1| - 0.0068 16.5 0.8 0.0078 16.4 0.8 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|89256371|ref|YP_513733.1| - 0.0079 16.9 0.0 0.0091 16.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Nudix_hydro PF18290.1 gi|89256371|ref|YP_513733.1| - 0.061 13.3 0.0 0.1 12.6 0.0 1.3 1 0 0 1 1 1 0 Nudix hydrolase domain ENT PF03735.14 gi|89256371|ref|YP_513733.1| - 0.077 13.1 0.1 0.15 12.2 0.1 1.4 1 0 0 1 1 1 0 ENT domain GTP_EFTU PF00009.27 gi|89256372|ref|YP_513734.1| - 7.6e-44 149.6 0.1 2.8e-43 147.7 0.0 1.8 1 1 1 2 2 2 1 Elongation factor Tu GTP binding domain MMR_HSR1 PF01926.23 gi|89256372|ref|YP_513734.1| - 7.3e-08 32.5 0.1 2.3e-06 27.6 0.0 2.6 1 1 1 2 2 2 1 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 gi|89256372|ref|YP_513734.1| - 2.4e-07 31.1 0.1 7e-07 29.6 0.1 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 2 Roc PF08477.13 gi|89256372|ref|YP_513734.1| - 0.0046 17.2 0.1 0.62 10.3 0.0 2.3 1 1 1 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase SRPRB PF09439.10 gi|89256372|ref|YP_513734.1| - 0.0067 15.9 0.1 0.39 10.1 0.0 2.3 1 1 1 2 2 2 1 Signal recognition particle receptor beta subunit FeoB_N PF02421.18 gi|89256372|ref|YP_513734.1| - 0.031 13.8 0.0 0.18 11.3 0.0 2.2 2 1 0 2 2 2 0 Ferrous iron transport protein B GTP_EFTU_D4 PF14578.6 gi|89256372|ref|YP_513734.1| - 0.13 12.2 0.2 0.26 11.2 0.2 1.5 1 0 0 1 1 1 0 Elongation factor Tu domain 4 GTP_EFTU_D3 PF03143.17 gi|89256373|ref|YP_513735.1| - 0.0041 17.4 0.0 0.0057 17.0 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu C-terminal domain UPF0228 PF05727.11 gi|89256373|ref|YP_513735.1| - 0.0075 16.1 0.3 0.011 15.5 0.3 1.3 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0228) APS_kinase PF01583.20 gi|89256374|ref|YP_513736.1| - 1.3e-54 184.4 0.0 1.4e-54 184.2 0.0 1.0 1 0 0 1 1 1 1 Adenylylsulphate kinase PQ-loop PF04193.14 gi|89256377|ref|YP_513739.1| - 3e-14 52.5 20.1 1.5e-10 40.7 6.8 3.2 4 0 0 4 4 4 2 PQ loop repeat Cyd_oper_YbgE PF09600.10 gi|89256377|ref|YP_513739.1| - 0.023 15.1 1.0 0.023 15.1 1.0 2.6 2 1 0 2 2 2 0 Cyd operon protein YbgE (Cyd_oper_YbgE) FKBP_N PF01346.18 gi|89256378|ref|YP_513740.1| - 2.3e-06 28.5 0.4 0.0076 17.2 0.1 2.1 2 0 0 2 2 2 2 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase polyprenyl_synt PF00348.17 gi|89256379|ref|YP_513741.1| - 2.5e-76 256.1 3.3 3.2e-76 255.8 3.3 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase HEPPP_synt_1 PF07307.11 gi|89256379|ref|YP_513741.1| - 0.011 15.4 0.1 0.021 14.4 0.1 1.5 1 0 0 1 1 1 0 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 Ribonuc_red_sm PF00268.21 gi|89256379|ref|YP_513741.1| - 0.045 13.2 0.2 5.8 6.3 0.0 2.7 3 0 0 3 3 3 0 Ribonucleotide reductase, small chain HTH_12 PF08461.10 gi|89256379|ref|YP_513741.1| - 0.18 11.8 0.6 0.44 10.5 0.2 1.9 2 0 0 2 2 2 0 Ribonuclease R winged-helix domain FKBP_N PF01346.18 gi|89256380|ref|YP_513742.1| - 7.8e-14 52.4 5.3 1e-13 52.1 3.2 2.0 2 0 0 2 2 2 1 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase FKBP_C PF00254.28 gi|89256380|ref|YP_513742.1| - 9e-09 35.6 0.0 7.1e-08 32.7 0.0 2.2 2 0 0 2 2 2 1 FKBP-type peptidyl-prolyl cis-trans isomerase DUF4827 PF16109.5 gi|89256380|ref|YP_513742.1| - 0.0035 17.3 0.3 0.0035 17.3 0.3 1.5 2 0 0 2 2 2 1 Domain of unknown function (DUF4827) DUF4772 PF15997.5 gi|89256380|ref|YP_513742.1| - 0.098 13.3 0.3 0.35 11.5 0.0 1.9 2 1 0 2 2 2 0 Domain of unknown function (DUF4772) ATP_bind_3 PF01171.20 gi|89256381|ref|YP_513743.1| - 3.1e-15 56.4 0.0 5.3e-15 55.6 0.0 1.3 1 0 0 1 1 1 1 PP-loop family NAD_synthase PF02540.17 gi|89256381|ref|YP_513743.1| - 0.12 11.5 0.0 0.27 10.3 0.0 1.5 1 1 0 1 1 1 0 NAD synthase 4HBT_2 PF13279.6 gi|89256382|ref|YP_513744.1| - 4.9e-14 52.9 0.0 5.8e-14 52.6 0.0 1.0 1 0 0 1 1 1 1 Thioesterase-like superfamily 4HBT PF03061.22 gi|89256382|ref|YP_513744.1| - 5.9e-09 36.2 0.0 8e-09 35.7 0.0 1.2 1 0 0 1 1 1 1 Thioesterase superfamily Acyl-ACP_TE PF01643.17 gi|89256382|ref|YP_513744.1| - 2.3e-08 33.6 0.5 0.00036 19.9 0.5 2.0 1 1 1 2 2 2 2 Acyl-ACP thioesterase SLT PF01464.20 gi|89256383|ref|YP_513745.1| - 1.6e-06 27.8 0.1 3.2e-06 26.8 0.0 1.5 2 0 0 2 2 2 1 Transglycosylase SLT domain DUF4223 PF13978.6 gi|89256383|ref|YP_513745.1| - 0.13 12.3 0.2 0.22 11.5 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4223) Peptidase_S13 PF02113.15 gi|89256384|ref|YP_513746.1| - 6.6e-86 288.8 0.6 7.8e-86 288.5 0.6 1.0 1 0 0 1 1 1 1 D-Ala-D-Ala carboxypeptidase 3 (S13) family Beta-lactamase2 PF13354.6 gi|89256384|ref|YP_513746.1| - 0.00025 20.7 0.0 0.3 10.7 0.0 2.5 2 1 0 2 2 2 2 Beta-lactamase enzyme family Transpeptidase PF00905.22 gi|89256384|ref|YP_513746.1| - 0.015 14.5 6.2 0.21 10.8 0.1 3.4 3 1 0 3 3 3 0 Penicillin binding protein transpeptidase domain Ribosomal_S21 PF01165.20 gi|89256385|ref|YP_513747.1| - 4e-21 74.5 6.2 4.7e-21 74.3 6.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S21 YqeY PF09424.10 gi|89256386|ref|YP_513748.1| - 2.8e-52 176.6 14.7 3.1e-52 176.5 14.7 1.0 1 0 0 1 1 1 1 Yqey-like protein DUF3349 PF11829.8 gi|89256386|ref|YP_513748.1| - 0.016 16.0 0.2 0.016 16.0 0.2 2.5 1 1 2 3 3 3 0 Protein of unknown function (DUF3349) GatB_Yqey PF02637.18 gi|89256386|ref|YP_513748.1| - 0.03 14.2 11.7 0.6 10.0 11.7 2.3 1 1 0 1 1 1 0 GatB domain Peptidase_M20 PF01546.28 gi|89256386|ref|YP_513748.1| - 0.11 12.1 0.0 0.13 12.0 0.0 1.1 1 0 0 1 1 1 0 Peptidase family M20/M25/M40 RAP-1 PF03085.15 gi|89256386|ref|YP_513748.1| - 0.4 10.3 5.3 0.071 12.8 1.8 1.5 2 0 0 2 2 2 0 Rhoptry-associated protein 1 (RAP-1) ATC_hydrolase PF14196.6 gi|89256386|ref|YP_513748.1| - 0.47 11.2 3.7 0.4 11.5 0.4 2.2 1 1 2 3 3 3 0 L-2-amino-thiazoline-4-carboxylic acid hydrolase CCDC84 PF14968.6 gi|89256386|ref|YP_513748.1| - 0.79 9.3 3.3 0.92 9.1 3.3 1.2 1 0 0 1 1 1 0 Coiled coil protein 84 Toprim_N PF08275.11 gi|89256387|ref|YP_513749.1| - 3.8e-41 140.1 1.3 6.9e-41 139.3 0.1 2.1 2 0 0 2 2 2 1 DNA primase catalytic core, N-terminal domain zf-CHC2 PF01807.20 gi|89256387|ref|YP_513749.1| - 1.4e-39 133.9 3.0 3.5e-39 132.6 0.8 2.5 2 0 0 2 2 2 1 CHC2 zinc finger Toprim_4 PF13662.6 gi|89256387|ref|YP_513749.1| - 1.6e-17 63.7 0.3 8.2e-17 61.5 0.0 2.3 2 0 0 2 2 2 1 Toprim domain Toprim_2 PF13155.6 gi|89256387|ref|YP_513749.1| - 8.3e-17 61.4 0.0 2.5e-16 59.9 0.0 1.9 1 0 0 1 1 1 1 Toprim-like Toprim PF01751.22 gi|89256387|ref|YP_513749.1| - 1.1e-09 38.4 0.0 5.3e-09 36.2 0.0 2.2 1 0 0 1 1 1 1 Toprim domain DnaB_bind PF10410.9 gi|89256387|ref|YP_513749.1| - 1.9e-08 34.4 0.2 6.6e-08 32.6 0.2 2.1 1 0 0 1 1 1 1 DnaB-helicase binding domain of primase Toprim_3 PF13362.6 gi|89256387|ref|YP_513749.1| - 2.2e-05 24.7 0.0 0.00013 22.2 0.0 2.2 2 0 0 2 2 2 1 Toprim domain Sigma70_r2 PF04542.14 gi|89256388|ref|YP_513750.1| - 5.9e-21 74.0 0.2 1.2e-20 73.0 0.2 1.6 1 0 0 1 1 1 1 Sigma-70 region 2 Sigma70_r3 PF04539.16 gi|89256388|ref|YP_513750.1| - 1.1e-20 73.5 0.7 1.1e-20 73.5 0.7 3.0 3 0 0 3 3 3 1 Sigma-70 region 3 Sigma70_r4 PF04545.16 gi|89256388|ref|YP_513750.1| - 4.6e-18 64.5 1.8 1.5e-17 62.9 0.4 2.6 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_ner PF04546.13 gi|89256388|ref|YP_513750.1| - 3.4e-16 59.7 8.9 3.4e-16 59.7 8.9 3.2 3 1 0 3 3 3 1 Sigma-70, non-essential region Sigma70_r1_1 PF03979.14 gi|89256388|ref|YP_513750.1| - 2.8e-11 43.3 1.8 2.8e-11 43.3 1.8 4.0 4 1 0 4 4 4 1 Sigma-70 factor, region 1.1 Sigma70_r1_2 PF00140.20 gi|89256388|ref|YP_513750.1| - 2.6e-08 33.7 0.3 6.2e-08 32.5 0.3 1.7 1 0 0 1 1 1 1 Sigma-70 factor, region 1.2 PspA_IM30 PF04012.12 gi|89256388|ref|YP_513750.1| - 0.00031 20.4 1.1 0.0017 18.0 1.1 2.3 1 0 0 1 1 1 1 PspA/IM30 family zf-C4H2 PF10146.9 gi|89256388|ref|YP_513750.1| - 0.022 15.1 1.4 0.022 15.1 1.4 3.1 3 1 0 3 3 3 0 Zinc finger-containing protein HTH_25 PF13413.6 gi|89256388|ref|YP_513750.1| - 0.025 14.4 0.2 1.6 8.7 0.0 3.3 2 0 0 2 2 2 0 Helix-turn-helix domain Lipoprotein_2 PF00921.17 gi|89256388|ref|YP_513750.1| - 7.4 6.0 10.4 0.19 11.2 2.1 2.4 2 1 0 2 2 2 0 Borrelia lipoprotein Pyr_redox_2 PF07992.14 gi|89256389|ref|YP_513751.1| - 7.7e-30 104.1 0.0 9.2e-30 103.9 0.0 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|89256389|ref|YP_513751.1| - 1e-08 35.6 0.5 4.6e-05 23.9 0.1 3.4 3 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|89256389|ref|YP_513751.1| - 1.5e-06 28.3 0.2 0.00083 19.4 0.0 2.8 2 2 1 3 3 3 2 FAD-NAD(P)-binding Sacchrp_dh_NADP PF03435.18 gi|89256389|ref|YP_513751.1| - 0.0022 18.3 0.3 0.025 14.8 0.0 2.4 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain TrkA_N PF02254.18 gi|89256389|ref|YP_513751.1| - 0.016 15.5 0.0 0.95 9.7 0.0 2.6 2 0 0 2 2 2 0 TrkA-N domain NAD_binding_8 PF13450.6 gi|89256389|ref|YP_513751.1| - 0.028 14.6 0.1 0.54 10.5 0.0 2.5 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain UDPG_MGDP_dh_N PF03721.14 gi|89256389|ref|YP_513751.1| - 0.029 13.9 0.0 0.051 13.1 0.0 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox_3 PF13738.6 gi|89256389|ref|YP_513751.1| - 0.075 12.3 5.8 2.5 7.3 0.0 3.8 3 1 1 4 4 4 0 Pyridine nucleotide-disulphide oxidoreductase Mobilization_B PF17511.2 gi|89256389|ref|YP_513751.1| - 0.19 12.1 0.1 0.35 11.2 0.1 1.4 1 0 0 1 1 1 0 Mobilization protein B Glyco_hydro_31 PF01055.26 gi|89256390|ref|YP_513752.1| - 4.1e-14 52.6 0.4 4.9e-14 52.4 0.4 1.0 1 0 0 1 1 1 1 Glycosyl hydrolases family 31 Glyco_hydro_31 PF01055.26 gi|89256391|ref|YP_513753.1| - 8.7e-23 81.2 0.0 1e-22 81.0 0.0 1.0 1 0 0 1 1 1 1 Glycosyl hydrolases family 31 Glyco_hydro_31 PF01055.26 gi|89256392|ref|YP_513754.1| - 2.5e-13 50.0 0.0 2.7e-13 49.9 0.0 1.0 1 0 0 1 1 1 1 Glycosyl hydrolases family 31 BPL_LplA_LipB PF03099.19 gi|89256393|ref|YP_513755.1| - 6.4e-10 39.0 0.1 1e-09 38.4 0.1 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family DUF493 PF04359.14 gi|89256394|ref|YP_513756.1| - 1.8e-25 89.3 0.3 2.1e-25 89.1 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF493) PUA_2 PF14306.6 gi|89256394|ref|YP_513756.1| - 0.12 12.0 0.1 0.13 12.0 0.1 1.3 1 1 0 1 1 1 0 PUA-like domain Peptidase_S11 PF00768.20 gi|89256395|ref|YP_513757.1| - 5.8e-70 235.5 0.8 2e-56 191.1 0.2 2.3 2 0 0 2 2 2 2 D-alanyl-D-alanine carboxypeptidase Beta-lactamase2 PF13354.6 gi|89256395|ref|YP_513757.1| - 8.6e-14 51.6 0.1 1.3e-13 51.0 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase enzyme family PBP5_C PF07943.13 gi|89256395|ref|YP_513757.1| - 1.8e-12 47.3 1.0 4.8e-12 46.0 1.0 1.8 1 0 0 1 1 1 1 Penicillin-binding protein 5, C-terminal domain Beta-lactamase PF00144.24 gi|89256395|ref|YP_513757.1| - 0.016 14.5 0.1 0.87 8.8 0.0 2.2 2 0 0 2 2 2 0 Beta-lactamase Pyrophosphatase PF00719.19 gi|89256396|ref|YP_513758.1| - 2.3e-55 186.8 0.7 2.6e-55 186.6 0.7 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase Hydrolase_3 PF08282.12 gi|89256397|ref|YP_513759.1| - 1.6e-09 37.9 4.7 3.1e-08 33.7 1.1 2.2 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|89256397|ref|YP_513759.1| - 9.4e-06 26.1 3.0 0.0034 17.7 0.1 2.3 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|89256397|ref|YP_513759.1| - 0.0018 18.4 0.6 0.0018 18.4 0.6 2.2 1 1 1 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|89256397|ref|YP_513759.1| - 0.045 13.9 0.4 0.24 11.5 0.6 2.0 1 1 1 2 2 2 0 Haloacid dehalogenase-like hydrolase LptC PF06835.13 gi|89256398|ref|YP_513760.1| - 4.7e-48 163.1 5.5 5.9e-48 162.8 5.5 1.1 1 0 0 1 1 1 1 Lipopolysaccharide-assembly, LptC-related OstA PF03968.14 gi|89256399|ref|YP_513761.1| - 5.8e-11 42.6 0.3 2.3e-06 27.8 0.0 2.4 2 0 0 2 2 2 2 OstA-like protein Tox-REase-2 PF15646.6 gi|89256399|ref|YP_513761.1| - 0.11 12.7 0.1 1.2 9.3 0.0 2.3 1 1 1 2 2 2 0 Restriction endonuclease fold toxin 2 YiiD_C PF09500.10 gi|89256399|ref|YP_513761.1| - 0.12 12.2 0.0 0.22 11.4 0.0 1.4 1 0 0 1 1 1 0 Putative thioesterase (yiiD_Cterm) ABC_tran PF00005.27 gi|89256400|ref|YP_513762.1| - 2.1e-33 115.8 0.0 3.2e-33 115.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.8 gi|89256400|ref|YP_513762.1| - 7.8e-08 32.1 0.0 1.4e-07 31.2 0.0 1.5 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_21 PF13304.6 gi|89256400|ref|YP_513762.1| - 9.5e-06 25.6 0.1 0.052 13.4 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|89256400|ref|YP_513762.1| - 0.0087 15.5 0.7 0.081 12.4 0.7 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.6 gi|89256400|ref|YP_513762.1| - 0.056 13.7 0.2 0.97 9.7 0.1 2.7 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.6 gi|89256400|ref|YP_513762.1| - 0.096 12.4 0.0 0.18 11.5 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|89256400|ref|YP_513762.1| - 0.16 11.8 0.1 0.29 10.9 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|89256400|ref|YP_513762.1| - 1.2 9.6 5.5 5.7 7.4 5.4 1.8 1 1 0 1 1 1 0 AAA domain FAA_hydrolase PF01557.18 gi|89256401|ref|YP_513763.1| - 1.5e-22 80.4 0.0 1.9e-21 76.8 0.0 1.9 1 1 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family DUF2848 PF11010.8 gi|89256401|ref|YP_513763.1| - 0.028 14.0 0.0 0.047 13.3 0.0 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2848) Abhydrolase_3 PF07859.13 gi|89256402|ref|YP_513764.1| - 1.7e-57 194.7 0.0 2.4e-57 194.2 0.0 1.2 1 0 0 1 1 1 1 alpha/beta hydrolase fold PNP_UDP_1 PF01048.20 gi|89256402|ref|YP_513764.1| - 2.4e-19 69.6 0.0 3.9e-19 68.8 0.0 1.3 1 0 0 1 1 1 1 Phosphorylase superfamily COesterase PF00135.28 gi|89256402|ref|YP_513764.1| - 2.7e-07 29.9 0.0 6.7e-07 28.5 0.0 1.5 1 1 0 1 1 1 1 Carboxylesterase family Say1_Mug180 PF10340.9 gi|89256402|ref|YP_513764.1| - 0.00025 20.1 0.1 0.00041 19.3 0.1 1.3 1 0 0 1 1 1 1 Steryl acetyl hydrolase PseudoU_synth_1 PF01416.20 gi|89256403|ref|YP_513765.1| - 5.3e-40 136.2 0.0 7.2e-29 100.4 0.0 2.1 2 0 0 2 2 2 2 tRNA pseudouridine synthase DUF2344 PF10105.9 gi|89256403|ref|YP_513765.1| - 0.0015 18.4 0.0 0.0021 17.9 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2344) Acid_PPase PF12689.7 gi|89256403|ref|YP_513765.1| - 0.0095 15.8 0.2 0.36 10.7 0.0 2.1 1 1 0 2 2 2 1 Acid Phosphatase AA_permease_2 PF13520.6 gi|89256404|ref|YP_513766.1| - 1.5e-29 103.1 55.2 1.8e-29 102.8 55.2 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|89256404|ref|YP_513766.1| - 4.8e-23 81.5 47.3 6e-23 81.2 47.3 1.1 1 0 0 1 1 1 1 Amino acid permease Fst_toxin PF13955.6 gi|89256404|ref|YP_513766.1| - 0.41 10.6 4.0 0.21 11.6 0.5 2.3 2 0 0 2 2 2 0 Toxin Fst, type I toxin-antitoxin system TNFR_16_TM PF18422.1 gi|89256404|ref|YP_513766.1| - 1.5 8.8 7.1 0.91 9.5 0.5 3.3 3 0 0 3 3 3 0 Tumor necrosis factor receptor member 16 trans-membrane domain DUF1003 PF06210.11 gi|89256405|ref|YP_513767.1| - 0.11 12.7 1.0 0.12 12.5 1.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1003) GMP_synt_C PF00958.22 gi|89256406|ref|YP_513768.1| - 6.1e-42 141.6 0.5 2.7e-41 139.5 0.0 2.3 3 0 0 3 3 3 1 GMP synthase C terminal domain GATase PF00117.28 gi|89256406|ref|YP_513768.1| - 2.7e-40 138.2 0.5 4.4e-40 137.5 0.5 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase class-I NAD_synthase PF02540.17 gi|89256406|ref|YP_513768.1| - 2.1e-11 43.4 0.2 8e-09 35.0 0.1 2.4 2 0 0 2 2 2 2 NAD synthase Peptidase_C26 PF07722.13 gi|89256406|ref|YP_513768.1| - 2.1e-10 40.7 4.3 2.8e-09 37.0 3.8 2.8 1 1 1 2 2 2 1 Peptidase C26 tRNA_Me_trans PF03054.16 gi|89256406|ref|YP_513768.1| - 5.7e-05 22.1 0.1 0.00024 20.0 0.0 2.1 2 0 0 2 2 2 1 tRNA methyl transferase QueC PF06508.13 gi|89256406|ref|YP_513768.1| - 0.0014 18.2 0.0 0.034 13.6 0.0 2.3 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 gi|89256406|ref|YP_513768.1| - 0.0023 17.7 0.0 0.0035 17.1 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase Arginosuc_synth PF00764.19 gi|89256406|ref|YP_513768.1| - 0.0045 16.3 0.1 0.11 11.8 0.0 2.3 2 0 0 2 2 2 1 Arginosuccinate synthase PAPS_reduct PF01507.19 gi|89256406|ref|YP_513768.1| - 0.005 16.9 0.0 0.097 12.7 0.0 2.7 2 1 0 2 2 2 1 Phosphoadenosine phosphosulfate reductase family ATP_bind_3 PF01171.20 gi|89256406|ref|YP_513768.1| - 0.022 14.5 0.0 0.045 13.5 0.0 1.6 1 0 0 1 1 1 0 PP-loop family DXP_synthase_N PF13292.6 gi|89256407|ref|YP_513769.1| - 1e-118 395.5 0.4 1.7e-118 394.8 0.1 1.6 2 0 0 2 2 2 1 1-deoxy-D-xylulose-5-phosphate synthase Transket_pyr PF02779.24 gi|89256407|ref|YP_513769.1| - 2.1e-38 131.8 0.0 3.9e-38 130.9 0.0 1.4 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 gi|89256407|ref|YP_513769.1| - 3e-19 69.1 0.0 9.5e-19 67.5 0.0 1.9 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_C PF02775.21 gi|89256407|ref|YP_513769.1| - 5.9e-06 26.1 0.5 7.6e-05 22.5 0.1 2.5 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E1_dh PF00676.20 gi|89256407|ref|YP_513769.1| - 1.2e-05 24.4 0.2 2e-05 23.7 0.2 1.2 1 0 0 1 1 1 1 Dehydrogenase E1 component Transketolase_N PF00456.21 gi|89256407|ref|YP_513769.1| - 0.0058 15.6 0.9 0.028 13.4 1.0 2.0 2 1 0 2 2 2 1 Transketolase, thiamine diphosphate binding domain Pectinesterase PF01095.19 gi|89256407|ref|YP_513769.1| - 0.097 11.4 0.5 0.49 9.1 0.2 1.9 2 0 0 2 2 2 0 Pectinesterase GGACT PF06094.12 gi|89256408|ref|YP_513770.1| - 9.5e-10 39.1 0.1 1.5e-09 38.5 0.1 1.2 1 0 0 1 1 1 1 Gamma-glutamyl cyclotransferase, AIG2-like Lipase_GDSL_2 PF13472.6 gi|89256409|ref|YP_513771.1| - 1.3e-24 87.6 0.0 2.1e-24 86.9 0.0 1.4 1 1 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family Lipase_GDSL PF00657.22 gi|89256409|ref|YP_513771.1| - 5.1e-16 59.2 1.1 9.9e-16 58.3 1.1 1.4 1 1 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase Lipase_GDSL_3 PF14606.6 gi|89256409|ref|YP_513771.1| - 1.6e-06 28.3 0.0 0.0012 19.0 0.0 2.1 2 0 0 2 2 2 2 GDSL-like Lipase/Acylhydrolase family PfkB PF00294.24 gi|89256409|ref|YP_513771.1| - 0.0017 17.7 0.0 0.42 9.9 0.0 2.1 2 0 0 2 2 2 2 pfkB family carbohydrate kinase OSK PF17182.4 gi|89256409|ref|YP_513771.1| - 0.027 13.7 0.1 0.042 13.1 0.1 1.3 1 0 0 1 1 1 0 OSK domain LPAM_1 PF08139.12 gi|89256409|ref|YP_513771.1| - 8.2 7.1 7.1 1 10.0 2.7 1.9 2 0 0 2 2 2 0 Prokaryotic membrane lipoprotein lipid attachment site CBS PF00571.28 gi|89256410|ref|YP_513772.1| - 5.3e-07 30.0 0.4 0.017 15.5 0.0 2.3 2 0 0 2 2 2 2 CBS domain adh_short_C2 PF13561.6 gi|89256411|ref|YP_513773.1| - 1.6e-43 149.0 0.0 2.2e-43 148.5 0.0 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|89256411|ref|YP_513773.1| - 5.5e-31 107.5 0.2 8.5e-31 106.9 0.2 1.3 1 0 0 1 1 1 1 short chain dehydrogenase Epimerase PF01370.21 gi|89256411|ref|YP_513773.1| - 9.1e-07 28.6 0.2 1.7e-06 27.7 0.2 1.6 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family KR PF08659.10 gi|89256411|ref|YP_513773.1| - 4.1e-06 26.8 0.3 0.00012 22.1 0.3 2.2 1 1 0 1 1 1 1 KR domain 3Beta_HSD PF01073.19 gi|89256411|ref|YP_513773.1| - 3.1e-05 23.1 0.7 3.8e-05 22.8 0.7 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.6 gi|89256411|ref|YP_513773.1| - 0.0025 17.7 0.0 0.0035 17.3 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding FtsJ PF01728.19 gi|89256411|ref|YP_513773.1| - 0.014 15.5 0.1 0.022 14.9 0.1 1.6 1 1 0 1 1 1 0 FtsJ-like methyltransferase GDP_Man_Dehyd PF16363.5 gi|89256411|ref|YP_513773.1| - 0.02 14.3 0.3 0.037 13.4 0.3 1.4 1 0 0 1 1 1 0 GDP-mannose 4,6 dehydratase RuvB_N PF05496.12 gi|89256412|ref|YP_513774.1| - 3e-82 274.1 0.1 4.3e-82 273.5 0.1 1.2 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_lid_4 PF17864.1 gi|89256412|ref|YP_513774.1| - 3.4e-33 113.2 0.8 6e-33 112.4 0.3 1.7 2 0 0 2 2 1 1 RuvB AAA lid domain RuvB_C PF05491.13 gi|89256412|ref|YP_513774.1| - 6.8e-27 93.1 0.0 1.3e-26 92.2 0.0 1.5 1 0 0 1 1 1 1 RuvB C-terminal winged helix domain AAA PF00004.29 gi|89256412|ref|YP_513774.1| - 3.9e-18 66.1 0.0 9.9e-18 64.8 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|89256412|ref|YP_513774.1| - 1e-07 32.0 0.1 4.4e-05 23.5 0.1 2.5 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.26 gi|89256412|ref|YP_513774.1| - 0.00037 20.2 0.0 0.7 9.6 0.0 2.3 1 1 1 2 2 2 2 Sigma-54 interaction domain AAA_22 PF13401.6 gi|89256412|ref|YP_513774.1| - 0.00048 20.4 0.5 0.13 12.5 0.0 2.5 1 1 1 2 2 2 1 AAA domain AAA_3 PF07726.11 gi|89256412|ref|YP_513774.1| - 0.00075 19.4 0.0 0.34 10.8 0.0 2.4 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|89256412|ref|YP_513774.1| - 0.002 18.1 0.0 0.0032 17.4 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain Mg_chelatase PF01078.21 gi|89256412|ref|YP_513774.1| - 0.0027 17.1 0.1 0.87 8.9 0.0 2.4 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_14 PF13173.6 gi|89256412|ref|YP_513774.1| - 0.0031 17.5 0.0 0.0072 16.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain TIP49 PF06068.13 gi|89256412|ref|YP_513774.1| - 0.0032 16.7 0.4 0.022 14.0 0.0 2.0 2 0 0 2 2 2 1 TIP49 P-loop domain AAA_18 PF13238.6 gi|89256412|ref|YP_513774.1| - 0.0083 16.7 0.0 0.038 14.5 0.0 2.1 2 1 0 2 2 2 1 AAA domain RNA_helicase PF00910.22 gi|89256412|ref|YP_513774.1| - 0.0095 16.3 0.0 0.034 14.5 0.0 1.9 2 0 0 2 2 2 1 RNA helicase AAA_16 PF13191.6 gi|89256412|ref|YP_513774.1| - 0.011 16.1 0.2 0.9 9.9 0.0 2.5 2 1 1 3 3 2 0 AAA ATPase domain Bac_DnaA PF00308.18 gi|89256412|ref|YP_513774.1| - 0.017 14.9 0.1 0.85 9.4 0.0 2.5 3 0 0 3 3 3 0 Bacterial dnaA protein NTPase_1 PF03266.15 gi|89256412|ref|YP_513774.1| - 0.026 14.4 0.5 0.88 9.5 0.1 2.3 1 1 1 2 2 2 0 NTPase TniB PF05621.11 gi|89256412|ref|YP_513774.1| - 0.04 13.3 0.1 0.61 9.5 0.0 2.1 1 1 1 2 2 2 0 Bacterial TniB protein AAA_2 PF07724.14 gi|89256412|ref|YP_513774.1| - 0.045 13.9 0.1 2.6 8.1 0.1 2.9 2 1 0 2 2 2 0 AAA domain (Cdc48 subfamily) DUF815 PF05673.13 gi|89256412|ref|YP_513774.1| - 0.052 12.7 0.0 0.78 8.9 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF815) AAA_17 PF13207.6 gi|89256412|ref|YP_513774.1| - 0.053 13.9 0.0 0.15 12.5 0.0 1.8 2 0 0 2 2 1 0 AAA domain ABC_tran PF00005.27 gi|89256412|ref|YP_513774.1| - 0.054 14.0 0.0 0.17 12.4 0.0 1.8 2 0 0 2 2 2 0 ABC transporter AAA_19 PF13245.6 gi|89256412|ref|YP_513774.1| - 0.06 13.7 0.7 2.3 8.6 0.1 2.4 1 1 1 2 2 2 0 AAA domain T2SSE PF00437.20 gi|89256412|ref|YP_513774.1| - 0.064 12.3 0.0 0.14 11.2 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein RsgA_GTPase PF03193.16 gi|89256412|ref|YP_513774.1| - 0.064 13.2 0.0 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase TsaE PF02367.17 gi|89256412|ref|YP_513774.1| - 0.077 13.0 0.0 0.17 11.9 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ResIII PF04851.15 gi|89256412|ref|YP_513774.1| - 0.084 12.9 0.1 4 7.4 0.1 2.2 1 1 1 2 2 2 0 Type III restriction enzyme, res subunit Sigma54_activ_2 PF14532.6 gi|89256412|ref|YP_513774.1| - 0.094 12.8 0.0 0.17 12.0 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_24 PF13479.6 gi|89256412|ref|YP_513774.1| - 0.2 11.4 0.1 0.55 9.9 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_13 PF13166.6 gi|89256412|ref|YP_513774.1| - 0.2 10.2 0.0 0.25 10.0 0.0 1.1 1 0 0 1 1 1 0 AAA domain HTH_26 PF13443.6 gi|89256413|ref|YP_513775.1| - 4.2e-23 81.6 0.2 4.6e-23 81.4 0.2 1.0 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_3 PF01381.22 gi|89256413|ref|YP_513775.1| - 1.3e-05 25.2 0.1 1.5e-05 25.0 0.1 1.1 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|89256413|ref|YP_513775.1| - 6.8e-05 22.8 0.0 7.9e-05 22.6 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.6 gi|89256413|ref|YP_513775.1| - 0.0079 16.1 0.1 0.0081 16.1 0.1 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain YdaS_antitoxin PF15943.5 gi|89256413|ref|YP_513775.1| - 0.014 15.3 0.0 0.016 15.0 0.0 1.2 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_31 PF13560.6 gi|89256413|ref|YP_513775.1| - 0.048 14.0 0.0 0.057 13.8 0.0 1.1 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_10 PF04967.12 gi|89256413|ref|YP_513775.1| - 0.067 13.0 0.1 0.11 12.3 0.1 1.5 1 0 0 1 1 1 0 HTH DNA binding domain DUF2975 PF11188.8 gi|89256414|ref|YP_513776.1| - 6.1e-05 22.9 9.6 0.00059 19.7 9.6 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF2975) gag-asp_proteas PF13975.6 gi|89256415|ref|YP_513777.1| - 6e-09 36.3 0.1 2.7e-05 24.6 0.0 2.2 2 0 0 2 2 2 2 gag-polyprotein putative aspartyl protease Asp_protease_2 PF13650.6 gi|89256415|ref|YP_513777.1| - 2.4e-08 34.5 0.0 0.001 19.7 0.0 2.6 3 0 0 3 3 3 2 Aspartyl protease MFS_2 PF13347.6 gi|89256417|ref|YP_513779.1| - 7.5e-05 21.5 0.1 8.6e-05 21.3 0.1 1.0 1 0 0 1 1 1 1 MFS/sugar transport protein PRA1 PF03208.19 gi|89256418|ref|YP_513780.1| - 0.059 13.0 9.2 0.068 12.8 9.2 1.1 1 0 0 1 1 1 0 PRA1 family protein DUF2207 PF09972.9 gi|89256418|ref|YP_513780.1| - 0.15 10.8 7.6 0.16 10.7 7.6 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) TcpE PF12648.7 gi|89256418|ref|YP_513780.1| - 0.18 12.4 7.0 0.082 13.5 4.2 1.7 1 1 1 2 2 2 0 TcpE family DUF2070 PF09843.9 gi|89256418|ref|YP_513780.1| - 0.44 8.8 9.9 0.47 8.7 9.9 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) DUF2254 PF10011.9 gi|89256418|ref|YP_513780.1| - 1.8 7.3 14.9 12 4.6 14.9 1.9 1 1 0 1 1 1 0 Predicted membrane protein (DUF2254) ABC2_membrane PF01061.24 gi|89256418|ref|YP_513780.1| - 1.8 7.9 17.8 5.3 6.4 17.8 1.7 1 1 0 1 1 1 0 ABC-2 type transporter CoA_binding_3 PF13727.6 gi|89256418|ref|YP_513780.1| - 2.4 8.1 8.0 0.95 9.5 5.8 1.4 1 1 0 1 1 1 0 CoA-binding domain SPC12 PF06645.13 gi|89256418|ref|YP_513780.1| - 4 7.6 8.0 0.31 11.2 2.8 1.9 2 0 0 2 2 2 0 Microsomal signal peptidase 12 kDa subunit (SPC12) DUF1772 PF08592.11 gi|89256418|ref|YP_513780.1| - 7.2 6.9 8.1 29 5.0 8.1 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF1772) Wzy_C PF04932.15 gi|89256418|ref|YP_513780.1| - 7.9 6.1 12.5 3 7.5 9.8 1.6 1 1 0 1 1 1 0 O-Antigen ligase DUF4131 PF13567.6 gi|89256418|ref|YP_513780.1| - 8.6 6.0 7.7 0.91 9.2 3.7 1.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) MgtE PF01769.16 gi|89256418|ref|YP_513780.1| - 8.9 6.7 13.2 1.3e+02 2.9 13.3 2.0 1 1 0 1 1 1 0 Divalent cation transporter MFS_2 PF13347.6 gi|89256419|ref|YP_513781.1| - 7.8e-09 34.6 5.1 8.7e-09 34.4 5.1 1.0 1 0 0 1 1 1 1 MFS/sugar transport protein PTR2 PF00854.21 gi|89256420|ref|YP_513782.1| - 3.4e-18 65.7 10.8 4.5e-18 65.3 10.8 1.2 1 0 0 1 1 1 1 POT family MFS_1 PF07690.16 gi|89256420|ref|YP_513782.1| - 2.2e-05 23.5 4.6 2.2e-05 23.5 4.6 2.0 1 1 0 2 2 2 1 Major Facilitator Superfamily VirB3 PF05101.13 gi|89256420|ref|YP_513782.1| - 0.14 12.4 0.3 0.14 12.4 0.3 2.2 2 0 0 2 2 2 0 Type IV secretory pathway, VirB3-like protein DUF2530 PF10745.9 gi|89256420|ref|YP_513782.1| - 0.21 11.9 3.4 4.7 7.5 0.1 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF2530) DDE_Tnp_1_2 PF13586.6 gi|89256421|ref|YP_513783.1| - 1e-13 51.5 0.0 1.8e-13 50.6 0.0 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|89256421|ref|YP_513783.1| - 4.2e-12 46.2 2.0 3.8e-11 43.0 2.0 1.9 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 gi|89256421|ref|YP_513783.1| - 6.9e-08 32.7 0.0 9.7e-08 32.2 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.6 gi|89256421|ref|YP_513783.1| - 0.00017 21.3 0.2 0.00023 20.9 0.2 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease DUF4096 PF13340.6 gi|89256421|ref|YP_513783.1| - 0.0056 16.9 0.0 0.011 15.9 0.0 1.5 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) CBAH PF02275.18 gi|89256423|ref|YP_513785.1| - 3.2e-36 125.6 0.9 5.3e-36 124.9 0.9 1.4 1 1 0 1 1 1 1 Linear amide C-N hydrolases, choloylglycine hydrolase family AAT PF03417.16 gi|89256423|ref|YP_513785.1| - 3.5e-06 26.9 0.0 4.4e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase SpoU_methylase PF00588.19 gi|89256424|ref|YP_513786.1| - 8.9e-30 103.7 0.1 3.5e-29 101.8 0.0 1.8 2 0 0 2 2 2 1 SpoU rRNA Methylase family SpoU_sub_bind PF08032.12 gi|89256424|ref|YP_513786.1| - 1.2e-06 28.6 0.0 7.7e-05 22.9 0.0 3.0 2 1 0 2 2 2 1 RNA 2'-O ribose methyltransferase substrate binding ERCC4 PF02732.15 gi|89256424|ref|YP_513786.1| - 0.12 12.5 2.1 0.24 11.6 2.1 1.5 1 1 0 1 1 1 0 ERCC4 domain PMSR PF01625.21 gi|89256425|ref|YP_513787.1| - 2.6e-53 180.3 2.7 3.4e-53 179.9 2.7 1.1 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase SelR PF01641.18 gi|89256425|ref|YP_513787.1| - 1.1e-39 135.3 0.1 2.2e-39 134.3 0.1 1.4 1 0 0 1 1 1 1 SelR domain Ribosomal_L37e PF01907.19 gi|89256425|ref|YP_513787.1| - 0.034 14.3 1.9 0.051 13.7 0.1 2.2 2 0 0 2 2 2 0 Ribosomal protein L37e zinc_ribbon_10 PF10058.9 gi|89256425|ref|YP_513787.1| - 0.052 13.3 0.9 5.6 6.8 0.1 2.5 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein DZR PF12773.7 gi|89256425|ref|YP_513787.1| - 0.053 13.6 0.5 0.27 11.3 0.2 2.3 2 1 0 2 2 2 0 Double zinc ribbon GFA PF04828.14 gi|89256425|ref|YP_513787.1| - 0.072 13.4 2.4 0.76 10.2 0.1 3.1 2 1 1 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme Auto_anti-p27 PF06677.12 gi|89256425|ref|YP_513787.1| - 0.2 11.8 3.0 0.3 11.3 0.2 2.5 3 0 0 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zinc_ribbon_2 PF13240.6 gi|89256425|ref|YP_513787.1| - 0.68 9.7 0.0 0.68 9.7 0.0 3.0 3 0 0 3 3 3 0 zinc-ribbon domain Thioredoxin_4 PF13462.6 gi|89256426|ref|YP_513788.1| - 5.3e-14 52.7 0.2 5.3e-14 52.7 0.2 2.2 2 1 1 3 3 3 1 Thioredoxin DSBA PF01323.20 gi|89256426|ref|YP_513788.1| - 2e-11 44.1 5.9 1.4e-10 41.2 3.5 2.5 2 1 0 2 2 2 1 DSBA-like thioredoxin domain FKBP_N PF01346.18 gi|89256426|ref|YP_513788.1| - 1.6e-07 32.2 0.6 1.6e-07 32.2 0.6 2.8 3 0 0 3 3 3 1 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase Thioredoxin_2 PF13098.6 gi|89256426|ref|YP_513788.1| - 9.8e-06 26.0 0.9 8e-05 23.1 0.9 2.2 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin PF00085.20 gi|89256426|ref|YP_513788.1| - 0.00012 22.0 0.2 0.0011 18.9 0.0 2.4 2 0 0 2 2 2 1 Thioredoxin FKBP_N PF01346.18 gi|89256427|ref|YP_513789.1| - 1.2e-10 42.2 4.9 1.5e-10 41.9 4.9 1.1 1 0 0 1 1 1 1 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase Fst_toxin PF13955.6 gi|89256427|ref|YP_513789.1| - 0.15 12.0 0.4 0.22 11.5 0.4 1.2 1 0 0 1 1 1 0 Toxin Fst, type I toxin-antitoxin system RsfS PF02410.15 gi|89256428|ref|YP_513790.1| - 2.5e-25 88.8 1.2 4.1e-25 88.1 0.9 1.4 1 1 1 2 2 2 1 Ribosomal silencing factor during starvation DUF1598 PF07643.11 gi|89256428|ref|YP_513790.1| - 0.0033 17.6 0.0 0.0048 17.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1598) YcaO_C PF18381.1 gi|89256428|ref|YP_513790.1| - 0.048 13.6 0.9 0.079 12.9 0.5 1.6 1 1 0 1 1 1 0 YcaO cyclodehydratase C-terminal domain FtsH_ext PF06480.15 gi|89256428|ref|YP_513790.1| - 0.097 13.0 0.2 0.14 12.5 0.2 1.2 1 0 0 1 1 1 0 FtsH Extracellular Radical_SAM PF04055.21 gi|89256428|ref|YP_513790.1| - 0.13 12.6 0.2 0.17 12.2 0.2 1.2 1 0 0 1 1 1 0 Radical SAM superfamily ABC2_membrane_5 PF13346.6 gi|89256429|ref|YP_513791.1| - 0.026 14.1 16.5 0.03 13.9 16.5 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein AA_permease_2 PF13520.6 gi|89256429|ref|YP_513791.1| - 0.06 12.2 12.5 0.081 11.7 12.5 1.1 1 0 0 1 1 1 0 Amino acid permease DUF4293 PF14126.6 gi|89256429|ref|YP_513791.1| - 0.17 12.1 9.8 0.2 11.9 9.8 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4293) MerC PF03203.14 gi|89256429|ref|YP_513791.1| - 0.23 11.9 4.0 0.7 10.4 4.0 1.7 1 1 0 1 1 1 0 MerC mercury resistance protein EXS PF03124.14 gi|89256429|ref|YP_513791.1| - 1.1 8.5 10.2 1.7 7.9 9.7 1.5 1 1 1 2 2 2 0 EXS family Tetraspanin PF00335.20 gi|89256429|ref|YP_513791.1| - 5.7 6.6 11.2 6.9 6.3 11.2 1.2 1 0 0 1 1 1 0 Tetraspanin family 4HB_MCP_1 PF12729.7 gi|89256430|ref|YP_513792.1| - 0.0062 16.1 0.2 0.01 15.4 0.2 1.3 1 0 0 1 1 1 1 Four helix bundle sensory module for signal transduction BNR PF02012.20 gi|89256430|ref|YP_513792.1| - 0.037 14.0 2.4 0.049 13.6 0.6 2.2 2 0 0 2 2 2 0 BNR/Asp-box repeat BNR_4 PF15892.5 gi|89256430|ref|YP_513792.1| - 0.048 13.0 1.4 0.92 8.8 0.1 2.0 1 1 1 2 2 2 0 BNR repeat-containing family member DUF3139 PF11337.8 gi|89256430|ref|YP_513792.1| - 0.049 14.3 0.3 0.049 14.3 0.3 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3139) DUF515 PF04415.12 gi|89256430|ref|YP_513792.1| - 0.054 11.9 0.3 0.061 11.7 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF515) ETRAMP PF09716.10 gi|89256430|ref|YP_513792.1| - 0.12 12.4 3.7 0.23 11.5 3.7 1.4 1 0 0 1 1 1 0 Malarial early transcribed membrane protein (ETRAMP) tRNA-synt_2c PF01411.19 gi|89256431|ref|YP_513793.1| - 9.6e-221 734.1 0.6 1.5e-220 733.5 0.6 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (A) DHHA1 PF02272.19 gi|89256431|ref|YP_513793.1| - 2.6e-21 76.5 12.9 7.3e-21 75.0 5.9 3.0 3 0 0 3 3 3 2 DHHA1 domain tRNA_SAD PF07973.14 gi|89256431|ref|YP_513793.1| - 3e-19 68.8 0.4 9.8e-19 67.2 0.4 2.0 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain CorA PF01544.18 gi|89256431|ref|YP_513793.1| - 0.29 10.4 2.2 1.1 8.6 0.0 2.3 2 0 0 2 2 2 0 CorA-like Mg2+ transporter protein OEP PF02321.18 gi|89256432|ref|YP_513794.1| - 9.9e-43 146.1 18.6 4.9e-21 75.4 11.9 2.1 2 0 0 2 2 2 2 Outer membrane efflux protein Peptidase_M17 PF00883.21 gi|89256433|ref|YP_513795.1| - 2.5e-95 319.3 0.1 3.2e-95 319.0 0.1 1.1 1 0 0 1 1 1 1 Cytosol aminopeptidase family, catalytic domain MraZ PF02381.18 gi|89256433|ref|YP_513795.1| - 0.084 12.9 0.0 4.1 7.5 0.0 3.0 3 0 0 3 3 3 0 MraZ protein, putative antitoxin-like TAL_FSA PF00923.19 gi|161353781|ref|YP_513796.2| - 2.4e-91 306.0 5.1 2.8e-91 305.9 5.1 1.0 1 0 0 1 1 1 1 Transaldolase/Fructose-6-phosphate aldolase Spidroin_MaSp PF11260.8 gi|161353781|ref|YP_513796.2| - 0.16 12.3 1.3 0.29 11.5 0.3 2.0 2 0 0 2 2 2 0 Major ampullate spidroin 1 and 2 Isochorismatase PF00857.20 gi|89256436|ref|YP_513798.1| - 1.2e-14 54.8 0.0 1.3e-14 54.8 0.0 1.1 1 0 0 1 1 1 1 Isochorismatase family DDE_Tnp_1_2 PF13586.6 gi|89256437|ref|YP_513799.1| - 1.3e-13 51.1 0.0 2.8e-13 50.0 0.0 1.6 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|89256437|ref|YP_513799.1| - 7.5e-12 45.3 1.9 6.5e-11 42.3 1.9 2.0 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 gi|89256437|ref|YP_513799.1| - 9.4e-08 32.2 0.0 1.6e-07 31.4 0.0 1.3 1 0 0 1 1 1 1 Transposase DDE domain DUF4096 PF13340.6 gi|89256437|ref|YP_513799.1| - 0.0079 16.4 0.0 0.015 15.5 0.0 1.5 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) NMN_transporter PF04973.12 gi|89256438|ref|YP_513800.1| - 3.8e-35 121.4 23.7 4.4e-35 121.2 23.7 1.0 1 0 0 1 1 1 1 Nicotinamide mononucleotide transporter Cyt_c_ox_IV PF12270.8 gi|89256438|ref|YP_513800.1| - 0.023 14.8 1.9 0.023 14.8 1.9 2.3 1 1 1 2 2 2 0 Cytochrome c oxidase subunit IV Isochorismatase PF00857.20 gi|89256439|ref|YP_513801.1| - 8e-24 84.8 0.0 1e-23 84.4 0.0 1.1 1 0 0 1 1 1 1 Isochorismatase family GCV_T PF01571.21 gi|89256440|ref|YP_513802.1| - 1.8e-10 40.6 0.0 8.9e-10 38.4 0.0 1.9 1 1 0 1 1 1 1 Aminomethyltransferase folate-binding domain UvrD-helicase PF00580.21 gi|89256441|ref|YP_513803.1| - 3.9e-72 243.4 10.7 3.9e-72 243.4 10.7 3.2 2 2 0 2 2 2 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.6 gi|89256441|ref|YP_513803.1| - 8.8e-64 216.1 14.8 8.8e-64 216.1 14.8 1.7 2 0 0 2 2 2 1 UvrD-like helicase C-terminal domain AAA_19 PF13245.6 gi|89256441|ref|YP_513803.1| - 8.4e-35 120.2 0.0 4.6e-34 117.9 0.0 2.1 2 0 0 2 2 2 1 AAA domain UvrD_C_2 PF13538.6 gi|89256441|ref|YP_513803.1| - 6.1e-09 35.6 0.0 1.6e-08 34.2 0.0 1.8 1 1 0 1 1 1 1 UvrD-like helicase C-terminal domain AAA_30 PF13604.6 gi|89256441|ref|YP_513803.1| - 1.4e-08 34.7 0.0 4.7e-05 23.2 0.1 2.2 2 0 0 2 2 2 2 AAA domain Viral_helicase1 PF01443.18 gi|89256441|ref|YP_513803.1| - 2.2e-08 34.1 0.1 0.00065 19.5 0.0 3.4 3 0 0 3 3 3 2 Viral (Superfamily 1) RNA helicase AAA_11 PF13086.6 gi|89256441|ref|YP_513803.1| - 0.00042 20.2 0.8 0.0038 17.1 0.1 2.6 3 0 0 3 3 3 1 AAA domain AAA_12 PF13087.6 gi|89256441|ref|YP_513803.1| - 0.0038 16.9 9.0 0.029 14.0 1.1 4.0 3 1 0 3 3 3 1 AAA domain Brr6_like_C_C PF10104.9 gi|89256441|ref|YP_513803.1| - 0.018 14.8 0.1 0.041 13.7 0.1 1.5 1 0 0 1 1 1 0 Di-sulfide bridge nucleocytoplasmic transport domain DEAD PF00270.29 gi|89256441|ref|YP_513803.1| - 0.063 13.0 0.9 0.46 10.2 0.3 2.5 2 0 0 2 2 2 0 DEAD/DEAH box helicase ATPase PF06745.13 gi|89256441|ref|YP_513803.1| - 0.071 12.5 0.9 1.4 8.2 0.3 2.6 2 0 0 2 2 2 0 KaiC S1_2 PF13509.6 gi|89256442|ref|YP_513804.1| - 1e-24 86.4 1.0 1.4e-16 60.3 0.2 2.8 3 0 0 3 3 3 2 S1 domain CvfB_WH PF17783.1 gi|89256442|ref|YP_513804.1| - 3e-23 81.4 0.1 5.4e-23 80.6 0.1 1.5 1 0 0 1 1 1 1 CvfB-like winged helix domain S1 PF00575.23 gi|89256442|ref|YP_513804.1| - 0.0048 17.2 0.0 0.11 12.8 0.0 2.9 2 1 0 2 2 2 1 S1 RNA binding domain DUF2582 PF10771.9 gi|89256442|ref|YP_513804.1| - 0.098 12.8 0.0 0.21 11.8 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix domain (DUF2582) UPF0176_N PF17773.1 gi|89256443|ref|YP_513805.1| - 6.6e-27 93.7 0.0 1.3e-26 92.7 0.0 1.5 1 0 0 1 1 1 1 UPF0176 acylphosphatase like domain Rhodanese PF00581.20 gi|89256443|ref|YP_513805.1| - 6.8e-10 39.4 0.0 1.8e-09 38.1 0.0 1.8 1 0 0 1 1 1 1 Rhodanese-like domain Rhodanese_C PF12368.8 gi|89256443|ref|YP_513805.1| - 0.00021 21.6 4.5 0.00086 19.6 4.5 2.0 1 1 0 1 1 1 1 Rhodanase C-terminal RdgC PF04381.12 gi|89256444|ref|YP_513806.1| - 4.8e-72 242.7 1.8 5.4e-72 242.6 1.8 1.0 1 0 0 1 1 1 1 Putative exonuclease, RdgC MHC_I_3 PF16497.5 gi|89256444|ref|YP_513806.1| - 0.008 15.7 0.0 0.014 14.9 0.0 1.4 1 0 0 1 1 1 1 MHC-I family domain Type_ISP_C PF18135.1 gi|89256445|ref|YP_513807.1| - 0.059 12.4 0.0 0.059 12.4 0.0 1.2 1 0 0 1 1 1 0 Type ISP C-terminal specificity domain DUF2850 PF11012.8 gi|89256446|ref|YP_513808.1| - 0.041 14.2 0.2 0.85 10.0 0.1 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF2850) Claudin_2 PF13903.6 gi|89256447|ref|YP_513809.1| - 0.016 15.0 2.5 0.019 14.8 2.5 1.3 1 0 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction DUF2207 PF09972.9 gi|89256447|ref|YP_513809.1| - 1.4 7.6 13.2 10 4.7 13.2 2.0 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) HipA_C PF07804.12 gi|89256450|ref|YP_513812.1| - 1.2e-49 168.9 0.0 3.9e-49 167.2 0.0 1.7 1 1 1 2 2 2 1 HipA-like C-terminal domain Couple_hipA PF13657.6 gi|89256450|ref|YP_513812.1| - 1.9e-24 86.2 0.0 3.3e-24 85.4 0.0 1.4 1 0 0 1 1 1 1 HipA N-terminal domain HTH_3 PF01381.22 gi|89256451|ref|YP_513813.1| - 1.1e-08 35.0 0.1 1.4e-08 34.6 0.1 1.1 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|89256451|ref|YP_513813.1| - 3.1e-07 30.6 0.0 3.7e-07 30.4 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|89256451|ref|YP_513813.1| - 1.8e-06 27.9 0.0 2.2e-06 27.6 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|89256451|ref|YP_513813.1| - 0.00085 19.1 0.0 0.0014 18.5 0.0 1.4 1 1 0 1 1 1 1 Helix-turn-helix domain MqsA_antitoxin PF15731.5 gi|89256451|ref|YP_513813.1| - 0.0019 18.3 0.1 0.002 18.2 0.1 1.1 1 0 0 1 1 1 1 Antitoxin component of bacterial toxin-antitoxin system, MqsA DDE_3 PF13358.6 gi|89256452|ref|YP_513814.1| - 2.3e-30 105.3 0.1 7.9e-30 103.5 0.0 1.8 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.16 gi|89256452|ref|YP_513814.1| - 0.0029 17.6 1.5 0.0084 16.2 0.6 2.3 2 1 0 2 2 2 1 Transposase HTH_29 PF13551.6 gi|89256452|ref|YP_513814.1| - 0.0033 17.4 0.0 0.008 16.2 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn helix HTH_40 PF14493.6 gi|89256452|ref|YP_513814.1| - 0.0099 16.3 0.1 0.069 13.6 0.0 2.3 3 1 0 3 3 3 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|89256452|ref|YP_513814.1| - 0.026 14.6 0.0 0.073 13.2 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|89256452|ref|YP_513814.1| - 0.12 12.2 0.0 0.34 10.8 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain rve PF00665.26 gi|89256452|ref|YP_513814.1| - 0.15 12.3 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 Integrase core domain DDE_Tnp_ISAZ013 PF07592.11 gi|89256452|ref|YP_513814.1| - 0.17 10.9 0.3 1.1 8.1 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain Acetyltransf_10 PF13673.7 gi|89256454|ref|YP_513816.1| - 0.0035 17.3 0.0 0.0052 16.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|89256454|ref|YP_513816.1| - 0.0071 16.7 0.2 0.01 16.2 0.2 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_19 PF18015.1 gi|89256454|ref|YP_513816.1| - 0.023 14.9 1.3 0.048 13.9 0.4 2.0 1 1 1 2 2 2 0 Acetyltransferase (GNAT) domain GRASP55_65 PF04495.14 gi|89256454|ref|YP_513816.1| - 0.15 12.3 0.0 0.18 12.2 0.0 1.3 1 0 0 1 1 1 0 GRASP55/65 PDZ-like domain Methyltr_RsmB-F PF01189.17 gi|89256455|ref|YP_513817.1| - 6.7e-36 123.8 0.0 7.7e-36 123.6 0.0 1.0 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F sCache_like PF16736.5 gi|89256455|ref|YP_513817.1| - 0.049 13.7 0.5 0.067 13.3 0.5 1.3 1 1 0 1 1 1 0 Single Cache-like Gemini_AL1 PF00799.20 gi|89256455|ref|YP_513817.1| - 0.1 13.0 0.4 0.18 12.1 0.4 1.4 1 0 0 1 1 1 0 Geminivirus Rep catalytic domain NusB PF01029.18 gi|89256456|ref|YP_513818.1| - 4.7e-17 62.5 3.4 6e-17 62.1 3.4 1.1 1 0 0 1 1 1 1 NusB family MIX PF18529.1 gi|89256456|ref|YP_513818.1| - 0.083 12.6 0.3 1.3 8.7 0.1 2.3 2 0 0 2 2 2 0 Mitochondrial membrane-anchored proteins Plasmod_dom_1 PF09715.10 gi|89256456|ref|YP_513818.1| - 0.15 12.1 4.5 1.9 8.6 0.4 3.6 1 1 2 4 4 4 0 Plasmodium protein of unknown function (Plasmod_dom_1) Inositol_P PF00459.25 gi|89256457|ref|YP_513819.1| - 1.7e-57 195.0 0.0 1.9e-57 194.9 0.0 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.20 gi|89256457|ref|YP_513819.1| - 0.0012 18.4 0.1 0.0023 17.4 0.1 1.5 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase, N-terminal domain Cons_hypoth698 PF03601.14 gi|89256458|ref|YP_513820.1| - 2.2e-91 305.9 30.5 2.7e-91 305.6 30.5 1.0 1 0 0 1 1 1 1 Conserved hypothetical protein 698 MFS_1 PF07690.16 gi|89256459|ref|YP_513821.1| - 7.3e-18 64.6 48.7 7.3e-18 64.6 48.7 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily YCII PF03795.14 gi|89256460|ref|YP_513822.1| - 1.8e-05 25.1 0.0 1.9e-05 25.0 0.0 1.1 1 0 0 1 1 1 1 YCII-related domain ketoacyl-synt PF00109.26 gi|89256461|ref|YP_513823.1| - 9e-59 199.1 0.5 1.6e-58 198.3 0.3 1.4 2 0 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain Ketoacyl-synt_C PF02801.22 gi|89256461|ref|YP_513823.1| - 2e-35 121.3 0.1 4.7e-35 120.1 0.1 1.6 1 0 0 1 1 1 1 Beta-ketoacyl synthase, C-terminal domain ACP_syn_III PF08545.10 gi|89256461|ref|YP_513823.1| - 7e-06 25.8 2.0 0.0014 18.5 2.0 2.7 1 1 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Thiolase_N PF00108.23 gi|89256461|ref|YP_513823.1| - 0.00021 20.8 0.1 0.00046 19.6 0.1 1.5 1 0 0 1 1 1 1 Thiolase, N-terminal domain KAsynt_C_assoc PF16197.5 gi|89256461|ref|YP_513823.1| - 0.042 14.3 0.1 0.16 12.4 0.1 2.0 2 0 0 2 2 2 0 Ketoacyl-synthetase C-terminal extension SpoVAD PF07451.11 gi|89256461|ref|YP_513823.1| - 0.046 12.4 0.4 0.19 10.4 0.4 1.9 1 1 0 1 1 1 0 Stage V sporulation protein AD (SpoVAD) PP-binding PF00550.25 gi|89256462|ref|YP_513824.1| - 7.7e-17 61.4 0.3 8.8e-17 61.2 0.3 1.1 1 0 0 1 1 1 1 Phosphopantetheine attachment site PP-binding_2 PF14573.6 gi|89256462|ref|YP_513824.1| - 5.2e-06 26.6 1.6 6.7e-06 26.2 1.5 1.2 1 1 0 1 1 1 1 Acyl-carrier Ribosomal_L50 PF10501.9 gi|89256462|ref|YP_513824.1| - 0.0053 16.9 0.0 0.0096 16.1 0.0 1.4 1 0 0 1 1 1 1 Ribosomal subunit 39S adh_short_C2 PF13561.6 gi|89256463|ref|YP_513825.1| - 1.2e-66 224.7 3.8 1.3e-66 224.5 3.8 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|89256463|ref|YP_513825.1| - 3.4e-60 202.9 3.9 4.1e-60 202.6 3.9 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|89256463|ref|YP_513825.1| - 5.7e-19 68.7 0.8 8.9e-19 68.1 0.8 1.3 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|89256463|ref|YP_513825.1| - 0.00012 21.7 0.0 0.00017 21.2 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 gi|89256463|ref|YP_513825.1| - 0.017 14.2 0.1 0.11 11.6 0.1 2.0 2 0 0 2 2 2 0 RmlD substrate binding domain NAD_binding_10 PF13460.6 gi|89256463|ref|YP_513825.1| - 0.019 14.9 0.2 0.025 14.5 0.2 1.2 1 0 0 1 1 1 0 NAD(P)H-binding tRNA_synt_1c_R1 PF04558.15 gi|89256463|ref|YP_513825.1| - 0.037 14.0 0.0 0.082 12.9 0.0 1.5 1 0 0 1 1 1 0 Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 LDcluster4 PF18306.1 gi|89256463|ref|YP_513825.1| - 0.074 12.6 2.5 0.073 12.6 0.9 2.0 2 1 0 2 2 2 0 SLOG cluster4 family MccV PF17508.2 gi|89256463|ref|YP_513825.1| - 2 9.0 6.0 0.79 10.3 0.4 2.5 3 0 0 3 3 3 0 Microcin V bacteriocin Acyl_transf_1 PF00698.21 gi|89256464|ref|YP_513826.1| - 1.8e-35 123.0 0.1 2.1e-35 122.8 0.1 1.0 1 0 0 1 1 1 1 Acyl transferase domain Lipase_3 PF01764.25 gi|89256464|ref|YP_513826.1| - 0.03 14.2 0.0 0.059 13.2 0.0 1.6 1 0 0 1 1 1 0 Lipase (class 3) ACP_syn_III_C PF08541.10 gi|89256465|ref|YP_513827.1| - 2.6e-36 123.7 0.7 1.1e-34 118.5 0.1 2.8 3 0 0 3 3 3 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ACP_syn_III PF08545.10 gi|89256465|ref|YP_513827.1| - 6.7e-34 115.6 1.1 1.5e-33 114.5 0.3 2.0 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III FAE1_CUT1_RppA PF08392.12 gi|89256465|ref|YP_513827.1| - 1.4e-10 41.0 0.3 2.9e-09 36.7 0.1 2.2 2 0 0 2 2 2 1 FAE1/Type III polyketide synthase-like protein Thiolase_N PF00108.23 gi|89256465|ref|YP_513827.1| - 5.1e-08 32.6 2.0 1.5e-07 31.1 0.8 2.1 2 1 0 2 2 2 1 Thiolase, N-terminal domain Chal_sti_synt_N PF00195.19 gi|89256465|ref|YP_513827.1| - 7.3e-06 25.6 0.5 2.1e-05 24.1 0.3 1.9 2 1 0 2 2 2 1 Chalcone and stilbene synthases, N-terminal domain SpoVAD PF07451.11 gi|89256465|ref|YP_513827.1| - 0.00011 21.1 2.3 0.00058 18.7 1.4 2.3 2 1 0 2 2 2 1 Stage V sporulation protein AD (SpoVAD) Thiolase_C PF02803.18 gi|89256465|ref|YP_513827.1| - 0.0038 16.9 0.1 0.76 9.4 0.0 2.5 2 0 0 2 2 2 1 Thiolase, C-terminal domain RHH_5 PF07878.11 gi|89256465|ref|YP_513827.1| - 0.012 15.4 1.5 0.059 13.3 0.6 2.5 2 0 0 2 2 2 0 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 Shikimate_DH PF01488.20 gi|89256465|ref|YP_513827.1| - 0.02 14.9 2.0 0.56 10.3 0.3 2.7 3 0 0 3 3 2 0 Shikimate / quinate 5-dehydrogenase HMG_CoA_synt_N PF01154.17 gi|89256465|ref|YP_513827.1| - 0.023 14.6 0.2 0.039 13.8 0.2 1.4 1 0 0 1 1 1 0 Hydroxymethylglutaryl-coenzyme A synthase N terminal Peptidase_M22 PF00814.25 gi|89256465|ref|YP_513827.1| - 0.029 14.1 0.4 3.1 7.4 0.1 2.3 2 0 0 2 2 2 0 Glycoprotease family DUF498 PF04430.14 gi|89256465|ref|YP_513827.1| - 0.11 12.5 0.0 1.2 9.3 0.0 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF498/DUF598) ketoacyl-synt PF00109.26 gi|89256465|ref|YP_513827.1| - 0.27 10.8 2.5 2.2 7.8 0.5 2.8 1 1 2 3 3 3 0 Beta-ketoacyl synthase, N-terminal domain FA_synthesis PF02504.15 gi|89256466|ref|YP_513828.1| - 9e-98 327.3 5.0 1e-97 327.1 5.0 1.0 1 0 0 1 1 1 1 Fatty acid synthesis protein Ribosomal_L32p PF01783.23 gi|89256467|ref|YP_513829.1| - 3e-21 75.4 0.5 3.3e-21 75.3 0.5 1.0 1 0 0 1 1 1 1 Ribosomal L32p protein family YceD PF02620.17 gi|89256468|ref|YP_513830.1| - 1.6e-12 47.6 0.5 2.2e-12 47.1 0.5 1.2 1 0 0 1 1 1 1 Large ribosomal RNA subunit accumulation protein YceD Transketolase_N PF00456.21 gi|89256469|ref|YP_513831.1| - 1e-150 501.3 0.0 1.4e-150 500.9 0.0 1.2 1 0 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain Transket_pyr PF02779.24 gi|89256469|ref|YP_513831.1| - 3.9e-46 157.0 0.0 6.4e-46 156.3 0.0 1.3 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 gi|89256469|ref|YP_513831.1| - 1.5e-12 47.4 0.0 6.8e-12 45.4 0.0 2.1 2 0 0 2 2 2 1 Transketolase, C-terminal domain E1_dh PF00676.20 gi|89256469|ref|YP_513831.1| - 0.00013 21.1 0.0 0.0017 17.4 0.0 2.1 2 0 0 2 2 2 1 Dehydrogenase E1 component DXP_synthase_N PF13292.6 gi|89256469|ref|YP_513831.1| - 0.00021 20.6 0.0 0.06 12.5 0.0 2.4 1 1 1 2 2 2 2 1-deoxy-D-xylulose-5-phosphate synthase TPP_enzyme_C PF02775.21 gi|89256469|ref|YP_513831.1| - 0.0084 15.9 0.1 0.1 12.4 0.1 2.4 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Gp_dh_C PF02800.20 gi|89256470|ref|YP_513832.1| - 1.7e-59 199.9 1.1 3.8e-59 198.8 0.5 1.8 2 0 0 2 2 2 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Gp_dh_N PF00044.24 gi|89256470|ref|YP_513832.1| - 2.9e-37 127.0 0.0 9e-37 125.5 0.0 1.9 2 0 0 2 2 2 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain PGK PF00162.19 gi|89256471|ref|YP_513833.1| - 6.5e-146 486.1 3.9 7.4e-146 485.9 3.9 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase VBS PF08913.10 gi|89256471|ref|YP_513833.1| - 0.11 13.0 0.1 0.22 12.0 0.1 1.5 1 0 0 1 1 1 0 Vinculin Binding Site PK PF00224.21 gi|89256472|ref|YP_513834.1| - 1.3e-119 399.1 12.2 1.8e-119 398.7 12.2 1.2 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.16 gi|89256472|ref|YP_513834.1| - 5.3e-26 91.1 0.3 1e-24 87.0 0.1 2.5 2 0 0 2 2 2 1 Pyruvate kinase, alpha/beta domain T6_Ig_like PF18002.1 gi|89256472|ref|YP_513834.1| - 0.037 13.9 0.4 0.098 12.5 0.4 1.8 1 0 0 1 1 1 0 T6 antigen Ig like domain DUF3006 PF11213.8 gi|89256472|ref|YP_513834.1| - 0.063 13.5 3.5 0.098 12.9 0.3 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF3006) F_bP_aldolase PF01116.20 gi|89256473|ref|YP_513835.1| - 1.8e-92 309.8 0.1 2.2e-92 309.5 0.1 1.1 1 0 0 1 1 1 1 Fructose-bisphosphate aldolase class-II OST_P2 PF18235.1 gi|89256473|ref|YP_513835.1| - 0.039 13.9 0.0 0.067 13.1 0.0 1.3 1 0 0 1 1 1 0 Oligosaccharyltransferase Peripheral 2 domain Trehalase PF01204.18 gi|89256474|ref|YP_513836.1| - 5.5e-46 157.5 0.5 6.4e-46 157.2 0.5 1.0 1 0 0 1 1 1 1 Trehalase Glyco_hydro_63 PF03200.16 gi|89256474|ref|YP_513836.1| - 0.062 12.1 1.1 0.31 9.7 0.1 1.9 2 0 0 2 2 2 0 Glycosyl hydrolase family 63 C-terminal domain Trehalase PF01204.18 gi|89256475|ref|YP_513837.1| - 2.1e-77 261.1 4.4 4.6e-77 260.0 4.4 1.4 1 1 0 1 1 1 1 Trehalase Thioredoxin_6 PF13848.6 gi|89256475|ref|YP_513837.1| - 0.003 17.5 0.3 0.0099 15.8 0.4 1.8 2 0 0 2 2 2 1 Thioredoxin-like domain Stn1 PF10451.9 gi|89256475|ref|YP_513837.1| - 0.064 12.2 0.4 0.12 11.3 0.1 1.6 2 0 0 2 2 2 0 Telomere regulation protein Stn1 DDE_3 PF13358.6 gi|89256476|ref|YP_513838.1| - 9.9e-30 103.2 0.2 3.2e-29 101.6 0.0 1.8 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.16 gi|89256476|ref|YP_513838.1| - 0.0029 17.6 1.5 0.0084 16.2 0.6 2.3 2 1 0 2 2 2 1 Transposase HTH_29 PF13551.6 gi|89256476|ref|YP_513838.1| - 0.0033 17.4 0.0 0.008 16.2 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn helix HTH_40 PF14493.6 gi|89256476|ref|YP_513838.1| - 0.011 16.2 0.1 0.069 13.6 0.0 2.3 3 1 0 3 3 3 0 Helix-turn-helix domain HTH_28 PF13518.6 gi|89256476|ref|YP_513838.1| - 0.026 14.6 0.0 0.073 13.2 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain CENP-B_N PF04218.13 gi|89256476|ref|YP_513838.1| - 0.097 12.3 0.0 0.98 9.1 0.0 2.5 3 0 0 3 3 3 0 CENP-B N-terminal DNA-binding domain HTH_23 PF13384.6 gi|89256476|ref|YP_513838.1| - 0.12 12.2 0.0 0.34 10.8 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain rve PF00665.26 gi|89256476|ref|YP_513838.1| - 0.15 12.3 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 Integrase core domain DDE_Tnp_ISAZ013 PF07592.11 gi|89256476|ref|YP_513838.1| - 0.17 10.9 0.3 1.1 8.1 0.1 2.0 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain PliI PF16743.5 gi|89256477|ref|YP_513839.1| - 0.031 14.0 0.0 0.045 13.5 0.0 1.2 1 0 0 1 1 1 0 Periplasmic lysozyme inhibitor of I-type lysozyme PDZ_4 PF17816.1 gi|89256477|ref|YP_513839.1| - 0.07 13.5 0.1 0.13 12.7 0.1 1.5 1 1 0 1 1 1 0 PDZ domain T6SS_VipA PF05591.12 gi|89256479|ref|YP_513841.1| - 1.2e-39 135.6 3.8 1.4e-39 135.4 3.8 1.0 1 0 0 1 1 1 1 Type VI secretion system, VipA, VC_A0107 or Hcp2 VipB PF05943.12 gi|89256480|ref|YP_513842.1| - 7.4e-140 466.5 0.0 8.7e-140 466.2 0.0 1.0 1 0 0 1 1 1 1 Type VI secretion protein, EvpB/VC_A0108, tail sheath IglC PF11550.8 gi|89256481|ref|YP_513843.1| - 5.7e-144 476.8 7.4 6.3e-144 476.7 7.4 1.0 1 0 0 1 1 1 1 Intracellular growth locus C protein T6SS_VasE PF05936.12 gi|89256482|ref|YP_513844.1| - 0.0034 16.1 0.1 0.06 12.0 0.1 2.1 2 0 0 2 2 2 2 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE T6PP_N PF18572.1 gi|89256484|ref|YP_513846.1| - 9.2 6.2 9.5 1.6 8.6 0.2 3.4 3 0 0 3 3 3 0 Trehalose-6-phosphate phosphatase N-terminal helical bundle domain MAP PF03642.13 gi|89256486|ref|YP_513848.1| - 6.6 7.1 16.0 2.7 8.4 0.3 3.8 3 1 1 4 4 4 0 MAP domain DotU PF09850.9 gi|89256487|ref|YP_513849.1| - 1.7e-09 37.7 0.0 2e-09 37.5 0.0 1.1 1 0 0 1 1 1 1 Type VI secretion system protein DotU Condensin2nSMC PF12422.8 gi|89256487|ref|YP_513849.1| - 0.016 15.4 0.1 0.85 9.8 0.0 2.2 2 0 0 2 2 2 0 Condensin II non structural maintenance of chromosomes subunit DUF4280 PF14107.6 gi|89256489|ref|YP_513851.1| - 9.4e-16 58.6 0.0 1.8e-15 57.7 0.0 1.4 2 0 0 2 2 2 1 Domain of unknown function (DUF4280) DUF2345 PF10106.9 gi|89256491|ref|YP_513853.1| - 0.0022 17.8 12.8 0.13 12.1 1.6 3.1 1 1 2 3 3 3 3 Uncharacterized protein conserved in bacteria (DUF2345) Sarcoglycan_1 PF04790.13 gi|89256491|ref|YP_513853.1| - 0.055 12.8 8.1 0.34 10.2 8.1 1.8 1 1 0 1 1 1 0 Sarcoglycan complex subunit protein ITI_HC_C PF06668.12 gi|89256491|ref|YP_513853.1| - 0.068 12.8 2.5 0.16 11.6 2.5 1.6 1 1 0 1 1 1 0 Inter-alpha-trypsin inhibitor heavy chain C-terminus STT3_PglB_C PF18527.1 gi|89256491|ref|YP_513853.1| - 0.88 9.7 5.7 0.85 9.8 4.0 1.9 1 1 0 1 1 1 0 STT3/PglB C-terminal beta-barrel domain Big_5 PF13205.6 gi|89256491|ref|YP_513853.1| - 2.8 8.7 6.2 1 10.1 1.9 2.0 1 1 1 2 2 2 0 Bacterial Ig-like domain IcmF_C PF06744.12 gi|89256493|ref|YP_513855.1| - 6.3e-10 39.0 0.0 1.1e-09 38.3 0.0 1.3 1 0 0 1 1 1 1 Type VI secretion protein IcmF C-terminal Clr2_transil PF16761.5 gi|89256493|ref|YP_513855.1| - 0.095 13.5 0.2 1.6 9.6 0.0 2.8 2 0 0 2 2 2 0 Transcription-silencing protein, cryptic loci regulator Clr2 DsbB PF02600.16 gi|89256495|ref|YP_513857.1| - 5.5e-12 46.3 3.7 5.5e-12 46.3 3.7 2.9 2 1 1 3 3 3 2 Disulfide bond formation protein DsbB Anoctamin PF04547.12 gi|89256495|ref|YP_513857.1| - 0.64 8.8 7.4 0.075 11.9 2.0 1.8 2 0 0 2 2 2 0 Calcium-activated chloride channel DUF4396 PF14342.6 gi|89256495|ref|YP_513857.1| - 1.9 8.8 10.8 0.05 14.0 4.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4396) DUF2417 PF10329.9 gi|89256495|ref|YP_513857.1| - 3.6 6.9 8.5 6.9 6.0 8.6 1.6 1 1 0 1 1 1 0 Region of unknown function (DUF2417) JTB PF05439.12 gi|89256495|ref|YP_513857.1| - 5.2 7.1 5.3 0.63 10.1 0.2 2.1 2 1 1 3 3 3 0 Jumping translocation breakpoint protein (JTB) PALP PF00291.25 gi|89256496|ref|YP_513858.1| - 1.4e-60 205.2 0.0 1.6e-60 205.0 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme HTH_1 PF00126.27 gi|89256497|ref|YP_513859.1| - 4.3e-15 55.4 0.0 5.8e-15 55.0 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family LysR_substrate PF03466.20 gi|89256497|ref|YP_513859.1| - 2.2e-07 30.5 0.0 3e-07 30.0 0.0 1.2 1 0 0 1 1 1 1 LysR substrate binding domain HTH_11 PF08279.12 gi|89256497|ref|YP_513859.1| - 4.6e-07 29.7 0.2 7.6e-07 29.0 0.2 1.3 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.6 gi|89256497|ref|YP_513859.1| - 2.4e-06 27.0 0.1 4.2e-06 26.2 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|89256497|ref|YP_513859.1| - 7.7e-06 25.6 0.0 1.5e-05 24.7 0.0 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR PF01047.22 gi|89256497|ref|YP_513859.1| - 0.00026 20.9 0.1 0.00048 20.0 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|89256497|ref|YP_513859.1| - 0.00035 20.3 0.0 0.00058 19.6 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_Tnp_4 PF13613.6 gi|89256497|ref|YP_513859.1| - 0.00072 19.2 0.0 0.0025 17.5 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix of DDE superfamily endonuclease MarR_2 PF12802.7 gi|89256497|ref|YP_513859.1| - 0.00079 19.3 0.1 0.0014 18.5 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_Tnp_ISL3 PF13542.6 gi|89256497|ref|YP_513859.1| - 0.0011 18.3 0.0 0.0019 17.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_20 PF12840.7 gi|89256497|ref|YP_513859.1| - 0.0013 18.8 0.3 0.0048 16.9 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|89256497|ref|YP_513859.1| - 0.0016 18.3 0.0 0.0027 17.5 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Sigma70_r4 PF04545.16 gi|89256497|ref|YP_513859.1| - 0.0033 16.9 0.0 0.0056 16.2 0.0 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 Fe_dep_repress PF01325.19 gi|89256497|ref|YP_513859.1| - 0.0042 17.3 0.1 0.0081 16.3 0.1 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_36 PF13730.6 gi|89256497|ref|YP_513859.1| - 0.0047 16.8 0.1 0.01 15.8 0.0 1.6 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_10 PF04967.12 gi|89256497|ref|YP_513859.1| - 0.0055 16.5 0.0 0.0096 15.7 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_23 PF13384.6 gi|89256497|ref|YP_513859.1| - 0.0072 16.1 0.0 0.019 14.8 0.0 1.7 2 0 0 2 2 1 1 Homeodomain-like domain HTH_30 PF13556.6 gi|89256497|ref|YP_513859.1| - 0.0086 15.9 0.0 0.015 15.1 0.0 1.4 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain HTH_28 PF13518.6 gi|89256497|ref|YP_513859.1| - 0.0091 16.1 0.0 0.015 15.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain LacI PF00356.21 gi|89256497|ref|YP_513859.1| - 0.0093 15.7 0.2 0.019 14.7 0.1 1.6 2 0 0 2 2 1 1 Bacterial regulatory proteins, lacI family Mga PF05043.13 gi|89256497|ref|YP_513859.1| - 0.0097 16.5 0.3 0.024 15.2 0.1 1.7 2 0 0 2 2 1 1 Mga helix-turn-helix domain HTH_38 PF13936.6 gi|89256497|ref|YP_513859.1| - 0.011 15.4 0.0 0.022 14.5 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain CNDH2_C PF16858.5 gi|89256497|ref|YP_513859.1| - 0.011 15.6 0.2 0.016 15.1 0.2 1.1 1 0 0 1 1 1 0 Condensin II complex subunit CAP-H2 or CNDH2, C-term TrmB PF01978.19 gi|89256497|ref|YP_513859.1| - 0.014 15.3 0.1 0.031 14.2 0.1 1.7 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|89256497|ref|YP_513859.1| - 0.015 15.3 0.3 0.028 14.4 0.3 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain YdaS_antitoxin PF15943.5 gi|89256497|ref|YP_513859.1| - 0.023 14.5 0.3 0.045 13.6 0.0 1.7 2 0 0 2 2 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_50 PF18024.1 gi|89256497|ref|YP_513859.1| - 0.029 14.0 0.0 0.088 12.4 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain DUF2089 PF09862.9 gi|89256497|ref|YP_513859.1| - 0.031 14.3 0.3 0.058 13.4 0.3 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF2089) HTH_34 PF13601.6 gi|89256497|ref|YP_513859.1| - 0.032 14.4 0.1 0.056 13.6 0.1 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_3 PF01381.22 gi|89256497|ref|YP_513859.1| - 0.034 14.2 0.1 0.063 13.3 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix HTH_6 PF01418.17 gi|89256497|ref|YP_513859.1| - 0.034 14.1 0.1 0.068 13.2 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family Phage_CI_repr PF07022.13 gi|89256497|ref|YP_513859.1| - 0.039 14.0 0.0 0.051 13.7 0.0 1.3 1 1 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain HTH_45 PF14947.6 gi|89256497|ref|YP_513859.1| - 0.049 13.6 0.1 0.077 13.0 0.1 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix SpoIIID PF12116.8 gi|89256497|ref|YP_513859.1| - 0.05 13.7 0.5 0.1 12.7 0.1 1.6 2 0 0 2 2 2 0 Stage III sporulation protein D HTH_DeoR PF08220.12 gi|89256497|ref|YP_513859.1| - 0.074 12.8 0.1 0.15 11.8 0.1 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_17 PF12728.7 gi|89256497|ref|YP_513859.1| - 0.1 12.8 0.1 0.61 10.3 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain P22_Cro PF14549.6 gi|89256497|ref|YP_513859.1| - 0.11 12.4 0.0 0.24 11.3 0.0 1.7 1 1 0 1 1 1 0 DNA-binding transcriptional regulator Cro MnmE_helical PF12631.7 gi|89256498|ref|YP_513860.1| - 3.6e-54 184.1 6.2 4.9e-54 183.6 6.2 1.2 1 0 0 1 1 1 1 MnmE helical domain TrmE_N PF10396.9 gi|89256498|ref|YP_513860.1| - 2.8e-41 140.4 0.1 1.6e-40 138.1 0.0 2.2 2 0 0 2 2 2 1 GTP-binding protein TrmE N-terminus MMR_HSR1 PF01926.23 gi|89256498|ref|YP_513860.1| - 2.4e-23 82.4 1.1 3.8e-23 81.7 0.3 1.8 2 0 0 2 2 2 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|89256498|ref|YP_513860.1| - 1.8e-09 37.3 0.3 5.3e-09 35.8 0.2 1.8 2 0 0 2 2 2 1 Ferrous iron transport protein B Ras PF00071.22 gi|89256498|ref|YP_513860.1| - 2.4e-06 27.3 0.4 1.1e-05 25.1 0.1 2.3 2 1 0 2 2 2 1 Ras family AIG1 PF04548.16 gi|89256498|ref|YP_513860.1| - 2.6e-06 26.9 0.9 5.6e-06 25.8 0.2 2.0 2 1 0 2 2 2 1 AIG1 family Dynamin_N PF00350.23 gi|89256498|ref|YP_513860.1| - 4.4e-06 26.9 0.9 9.4e-05 22.5 0.8 2.6 1 1 0 1 1 1 1 Dynamin family Gtr1_RagA PF04670.12 gi|89256498|ref|YP_513860.1| - 7.8e-06 25.4 0.6 1.3e-05 24.6 0.6 1.4 1 0 0 1 1 1 1 Gtr1/RagA G protein conserved region MMR_HSR1_Xtn PF16897.5 gi|89256498|ref|YP_513860.1| - 2.3e-05 24.3 2.6 0.00043 20.3 0.9 2.8 2 0 0 2 2 2 1 C-terminal region of MMR_HSR1 domain RsgA_GTPase PF03193.16 gi|89256498|ref|YP_513860.1| - 0.00023 21.1 2.4 0.0017 18.3 0.0 2.9 3 0 0 3 3 3 1 RsgA GTPase SUI1 PF01253.22 gi|89256498|ref|YP_513860.1| - 0.00098 19.6 0.4 0.21 12.2 0.0 3.1 4 0 0 4 4 3 1 Translation initiation factor SUI1 Roc PF08477.13 gi|89256498|ref|YP_513860.1| - 0.0015 18.8 0.1 0.0051 17.0 0.1 1.9 1 1 0 1 1 1 1 Ras of Complex, Roc, domain of DAPkinase SRPRB PF09439.10 gi|89256498|ref|YP_513860.1| - 0.016 14.7 2.0 0.016 14.6 0.1 1.9 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit ABC_tran PF00005.27 gi|89256498|ref|YP_513860.1| - 0.02 15.4 6.6 0.061 13.8 6.6 1.9 1 1 0 1 1 1 0 ABC transporter Arf PF00025.21 gi|89256498|ref|YP_513860.1| - 0.025 14.1 2.0 0.033 13.6 0.3 2.0 2 1 0 2 2 2 0 ADP-ribosylation factor family Guanylate_kin PF00625.21 gi|89256498|ref|YP_513860.1| - 0.026 14.2 0.4 0.15 11.7 0.0 2.4 2 0 0 2 2 2 0 Guanylate kinase NB-ARC PF00931.22 gi|89256498|ref|YP_513860.1| - 0.14 11.3 0.6 1.9 7.6 0.1 2.4 3 0 0 3 3 3 0 NB-ARC domain PduV-EutP PF10662.9 gi|89256498|ref|YP_513860.1| - 0.18 11.5 2.0 0.62 9.8 0.6 2.5 2 1 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation VirB3 PF05101.13 gi|89256499|ref|YP_513861.1| - 0.0003 20.9 0.1 0.00033 20.8 0.1 1.1 1 0 0 1 1 1 1 Type IV secretory pathway, VirB3-like protein DUF2852 PF11014.8 gi|89256499|ref|YP_513861.1| - 0.0027 17.8 3.1 0.0081 16.3 3.1 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF2852) DUF5531 PF17671.1 gi|89256499|ref|YP_513861.1| - 0.0087 16.0 0.0 0.0088 15.9 0.0 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF5531) PRT_C PF08372.10 gi|89256499|ref|YP_513861.1| - 0.062 13.0 1.4 0.067 12.9 1.4 1.1 1 0 0 1 1 1 0 Plant phosphoribosyltransferase C-terminal ECSCR PF15820.5 gi|89256499|ref|YP_513861.1| - 0.067 13.0 0.5 0.075 12.9 0.5 1.2 1 0 0 1 1 1 0 Endothelial cell-specific chemotaxis regulator Tmemb_9 PF05434.11 gi|89256499|ref|YP_513861.1| - 0.077 12.9 0.2 0.093 12.6 0.2 1.1 1 0 0 1 1 1 0 TMEM9 A_thal_3526 PF09713.10 gi|89256499|ref|YP_513861.1| - 0.087 13.1 0.3 0.087 13.1 0.3 1.8 2 0 0 2 2 2 0 Plant protein 1589 of unknown function (A_thal_3526) Ac81 PF05820.11 gi|89256499|ref|YP_513861.1| - 1 8.9 4.2 1.2 8.6 4.2 1.2 1 0 0 1 1 1 0 Baculoviridae AC81 Ribosomal_S30AE PF02482.19 gi|89256500|ref|YP_513862.1| - 3.9e-26 91.7 3.0 4.3e-26 91.5 3.0 1.0 1 0 0 1 1 1 1 Sigma 54 modulation protein / S30EA ribosomal protein PTS_EIIA_2 PF00359.22 gi|89256501|ref|YP_513863.1| - 2.6e-27 95.5 0.9 3e-27 95.3 0.9 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 FPL PF09758.9 gi|89256501|ref|YP_513863.1| - 0.068 13.2 3.6 0.084 12.9 1.9 1.8 1 1 0 2 2 2 0 Uncharacterised conserved protein SpoU_methylase PF00588.19 gi|89256502|ref|YP_513864.1| - 6.5e-31 107.4 0.6 9.5e-31 106.9 0.6 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family DUF573 PF04504.14 gi|89256502|ref|YP_513864.1| - 0.045 14.4 0.4 0.34 11.6 0.4 2.1 1 1 0 1 1 1 0 Protein of unknown function, DUF573 RNase_HII PF01351.18 gi|89256503|ref|YP_513865.1| - 8.9e-40 136.6 0.1 1e-39 136.5 0.1 1.0 1 0 0 1 1 1 1 Ribonuclease HII ACP_syn_III_C PF08541.10 gi|89256503|ref|YP_513865.1| - 0.021 15.0 0.2 0.13 12.4 0.1 2.2 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal UPF0228 PF05727.11 gi|89256503|ref|YP_513865.1| - 0.058 13.2 3.1 1.2 9.0 0.1 2.2 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0228) SSF PF00474.17 gi|89256504|ref|YP_513866.1| - 3.3e-12 46.0 40.5 2.2e-11 43.3 40.5 2.0 1 1 0 1 1 1 1 Sodium:solute symporter family CrgA PF06781.12 gi|89256504|ref|YP_513866.1| - 0.04 14.0 0.5 0.04 14.0 0.5 3.8 3 2 1 4 4 4 0 Cell division protein CrgA SspB PF04386.13 gi|89256505|ref|YP_513867.1| - 1.3e-19 70.7 0.1 2.9e-19 69.5 0.1 1.5 1 1 0 1 1 1 1 Stringent starvation protein B GST_N_3 PF13417.6 gi|89256506|ref|YP_513868.1| - 5.9e-05 23.4 0.0 0.00011 22.6 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.6 gi|89256506|ref|YP_513868.1| - 0.0049 17.2 0.0 0.0097 16.2 0.0 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N PF02798.20 gi|89256506|ref|YP_513868.1| - 0.047 14.0 0.0 0.14 12.5 0.0 1.8 2 0 0 2 2 2 0 Glutathione S-transferase, N-terminal domain Ribosomal_S9 PF00380.19 gi|89256507|ref|YP_513869.1| - 2.4e-46 157.2 0.2 2.7e-46 157.0 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 SpaA PF17802.1 gi|89256507|ref|YP_513869.1| - 0.014 15.7 0.0 0.027 14.8 0.0 1.5 1 1 0 1 1 1 0 Prealbumin-like fold domain Ribosomal_L13 PF00572.18 gi|89256508|ref|YP_513870.1| - 5.4e-58 194.7 0.3 6.2e-58 194.5 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L13 NAD_binding_8 PF13450.6 gi|89256509|ref|YP_513871.1| - 7.3e-10 38.9 0.0 1.3e-09 38.1 0.0 1.4 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Amino_oxidase PF01593.24 gi|89256509|ref|YP_513871.1| - 3e-07 30.1 0.0 6.7e-07 29.0 0.0 1.5 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase Pyr_redox_2 PF07992.14 gi|89256509|ref|YP_513871.1| - 0.00039 19.7 0.2 0.0053 16.0 0.2 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|89256509|ref|YP_513871.1| - 0.00055 19.6 0.1 0.036 13.6 0.3 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 gi|89256509|ref|YP_513871.1| - 0.0015 17.9 0.8 0.57 9.4 0.2 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|89256509|ref|YP_513871.1| - 0.011 15.8 0.0 0.056 13.4 0.0 2.0 2 0 0 2 2 2 0 FAD-NAD(P)-binding Thi4 PF01946.17 gi|89256509|ref|YP_513871.1| - 0.011 15.0 0.0 0.025 13.8 0.0 1.6 2 0 0 2 2 2 0 Thi4 family Lycopene_cycl PF05834.12 gi|89256509|ref|YP_513871.1| - 0.035 13.2 0.0 0.051 12.6 0.0 1.2 1 0 0 1 1 1 0 Lycopene cyclase protein FAD_binding_3 PF01494.19 gi|89256509|ref|YP_513871.1| - 0.077 12.2 0.0 0.15 11.2 0.0 1.4 1 0 0 1 1 1 0 FAD binding domain HI0933_like PF03486.14 gi|89256509|ref|YP_513871.1| - 0.43 9.2 3.1 0.98 8.0 0.3 2.5 3 0 0 3 3 3 0 HI0933-like protein MltA PF03562.17 gi|89256510|ref|YP_513872.1| - 1e-70 238.0 0.1 1.3e-70 237.7 0.1 1.1 1 0 0 1 1 1 1 MltA specific insert domain 3D PF06725.11 gi|89256510|ref|YP_513872.1| - 4.2e-22 78.1 0.0 7.7e-22 77.3 0.0 1.5 1 0 0 1 1 1 1 3D domain DUF2647 PF10839.8 gi|89256510|ref|YP_513872.1| - 0.027 14.5 0.0 0.054 13.6 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2647) GrpE PF01025.19 gi|89256511|ref|YP_513873.1| - 2.8e-53 180.0 9.2 3.4e-53 179.7 9.2 1.2 1 0 0 1 1 1 1 GrpE Rep_4 PF05797.11 gi|89256511|ref|YP_513873.1| - 0.096 11.8 3.6 0.12 11.4 3.6 1.2 1 0 0 1 1 1 0 Yeast trans-acting factor (REP1/REP2) TSC22 PF01166.18 gi|89256511|ref|YP_513873.1| - 0.77 10.1 4.3 0.38 11.1 1.5 1.9 2 0 0 2 2 2 0 TSC-22/dip/bun family DUF4337 PF14235.6 gi|89256511|ref|YP_513873.1| - 1.5 8.9 5.6 1.8 8.7 5.0 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4337) DUF2203 PF09969.9 gi|89256511|ref|YP_513873.1| - 2.6 8.8 6.1 4 8.2 3.3 2.3 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) DUF4140 PF13600.6 gi|89256511|ref|YP_513873.1| - 3.5 8.1 7.7 2.9 8.4 5.6 1.9 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) HSP70 PF00012.20 gi|89256512|ref|YP_513874.1| - 8.7e-265 879.6 18.2 1e-264 879.3 18.2 1.0 1 0 0 1 1 1 1 Hsp70 protein MreB_Mbl PF06723.13 gi|89256512|ref|YP_513874.1| - 8.3e-13 47.8 6.7 9.4e-12 44.4 0.2 3.0 3 1 0 3 3 3 2 MreB/Mbl protein FGGY_C PF02782.16 gi|89256512|ref|YP_513874.1| - 0.0065 16.2 0.0 0.015 15.1 0.0 1.7 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain SICA_alpha PF12887.7 gi|89256512|ref|YP_513874.1| - 0.057 13.3 2.5 0.14 12.0 2.5 1.6 1 0 0 1 1 1 0 SICA extracellular alpha domain RNA_pol_Rpb2_2 PF04561.14 gi|89256512|ref|YP_513874.1| - 0.072 12.7 0.9 0.19 11.4 0.9 1.7 1 0 0 1 1 1 0 RNA polymerase Rpb2, domain 2 Raco_middle PF17651.1 gi|89256512|ref|YP_513874.1| - 0.26 10.9 1.4 17 5.1 0.1 3.1 3 1 1 4 4 4 0 RACo middle region DnaJ_C PF01556.18 gi|89256513|ref|YP_513875.1| - 3.8e-46 156.8 0.1 5e-46 156.4 0.1 1.2 1 0 0 1 1 1 1 DnaJ C terminal domain DnaJ PF00226.31 gi|89256513|ref|YP_513875.1| - 7.4e-29 99.7 1.2 1.2e-28 99.0 1.2 1.3 1 0 0 1 1 1 1 DnaJ domain DnaJ_CXXCXGXG PF00684.19 gi|89256513|ref|YP_513875.1| - 3.7e-13 49.6 15.1 6.9e-13 48.8 15.1 1.5 1 0 0 1 1 1 1 DnaJ central domain Anti-TRAP PF15777.5 gi|89256513|ref|YP_513875.1| - 0.0003 20.7 13.6 0.076 13.0 3.1 3.2 1 1 1 2 2 2 2 Tryptophan RNA-binding attenuator protein inhibitory protein TackOD1 PF18551.1 gi|89256513|ref|YP_513875.1| - 0.43 10.2 8.0 4.5 6.9 2.6 2.2 1 1 1 2 2 2 0 Thaumarchaeal output domain 1 DUF5351 PF17302.2 gi|89256513|ref|YP_513875.1| - 9.3 6.5 26.1 5.6 7.2 1.2 4.7 5 0 0 5 5 5 0 Family of unknown function (DUF5351) LysR_substrate PF03466.20 gi|89256514|ref|YP_513876.1| - 2e-30 105.8 0.0 2.3e-30 105.5 0.0 1.0 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 gi|89256514|ref|YP_513876.1| - 0.023 14.7 0.0 0.09 12.7 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family Pirin_C_2 PF17954.1 gi|89256515|ref|YP_513877.1| - 1.4e-12 47.6 0.0 1.8e-12 47.3 0.0 1.0 1 0 0 1 1 1 1 Quercetinase C-terminal cupin domain DDE_3 PF13358.6 gi|89256516|ref|YP_513878.1| - 2.3e-30 105.3 0.1 7.9e-30 103.5 0.0 1.8 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.16 gi|89256516|ref|YP_513878.1| - 0.0029 17.6 1.5 0.0084 16.2 0.6 2.3 2 1 0 2 2 2 1 Transposase HTH_29 PF13551.6 gi|89256516|ref|YP_513878.1| - 0.0033 17.4 0.0 0.008 16.2 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn helix HTH_40 PF14493.6 gi|89256516|ref|YP_513878.1| - 0.0099 16.3 0.1 0.069 13.6 0.0 2.3 3 1 0 3 3 3 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|89256516|ref|YP_513878.1| - 0.026 14.6 0.0 0.073 13.2 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|89256516|ref|YP_513878.1| - 0.12 12.2 0.0 0.34 10.8 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain rve PF00665.26 gi|89256516|ref|YP_513878.1| - 0.15 12.3 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 Integrase core domain DDE_Tnp_ISAZ013 PF07592.11 gi|89256516|ref|YP_513878.1| - 0.17 10.9 0.3 1.1 8.1 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain EamA PF00892.20 gi|89256517|ref|YP_513879.1| - 2.6e-40 137.8 43.9 5.8e-21 75.1 21.7 2.0 2 0 0 2 2 2 2 EamA-like transporter family ISK_Channel PF02060.15 gi|89256517|ref|YP_513879.1| - 0.18 11.6 1.6 0.53 10.0 0.1 2.2 2 0 0 2 2 2 0 Slow voltage-gated potassium channel DUF2418 PF10332.9 gi|89256517|ref|YP_513879.1| - 4.8 7.8 9.3 14 6.2 0.8 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF2418) Phage_holin_2_4 PF16082.5 gi|89256517|ref|YP_513879.1| - 9.3 6.1 12.3 0.25 11.1 0.9 2.8 3 0 0 3 3 3 0 Bacteriophage holin family, superfamily II-like tRNA-synt_2d PF01409.20 gi|89256518|ref|YP_513880.1| - 7.8e-106 353.0 0.0 9.5e-106 352.7 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) Phe_tRNA-synt_N PF02912.18 gi|89256518|ref|YP_513880.1| - 4.8e-23 80.9 5.6 7.9e-23 80.2 5.6 1.4 1 0 0 1 1 1 1 Aminoacyl tRNA synthetase class II, N-terminal domain tRNA_synthFbeta PF17759.1 gi|89256518|ref|YP_513880.1| - 0.00089 18.8 0.0 0.0026 17.2 0.0 1.7 2 1 0 2 2 2 1 Phenylalanyl tRNA synthetase beta chain CLM domain PRP8_domainIV PF12134.8 gi|89256518|ref|YP_513880.1| - 0.15 11.7 0.2 0.26 10.9 0.2 1.3 1 0 0 1 1 1 0 PRP8 domain IV core B3_4 PF03483.17 gi|89256519|ref|YP_513881.1| - 1e-67 227.2 0.1 3.8e-67 225.3 0.0 2.1 3 0 0 3 3 3 1 B3/4 domain tRNA_synthFbeta PF17759.1 gi|89256519|ref|YP_513881.1| - 3.8e-47 160.5 0.0 5.9e-47 159.9 0.0 1.3 1 0 0 1 1 1 1 Phenylalanyl tRNA synthetase beta chain CLM domain tRNA_bind PF01588.20 gi|89256519|ref|YP_513881.1| - 1.1e-25 89.6 0.1 2.1e-25 88.6 0.1 1.5 1 0 0 1 1 1 1 Putative tRNA binding domain FDX-ACB PF03147.14 gi|89256519|ref|YP_513881.1| - 3.9e-24 84.9 1.0 2.5e-23 82.3 0.9 2.3 2 0 0 2 2 2 1 Ferredoxin-fold anticodon binding domain B5 PF03484.15 gi|89256519|ref|YP_513881.1| - 6.8e-18 64.7 0.1 8.6e-17 61.2 0.0 2.6 2 0 0 2 2 2 1 tRNA synthetase B5 domain PhetRS_B1 PF18262.1 gi|89256519|ref|YP_513881.1| - 0.024 14.9 0.0 2.9 8.2 0.0 2.9 2 0 0 2 2 2 0 Phe-tRNA synthetase beta subunit B1 domain FUR PF01475.19 gi|89256520|ref|YP_513882.1| - 6e-11 42.5 0.1 7.2e-11 42.3 0.1 1.1 1 0 0 1 1 1 1 Ferric uptake regulator family Cystatin PF00031.21 gi|89256520|ref|YP_513882.1| - 0.0024 18.1 0.4 0.0054 17.0 0.1 1.8 1 1 1 2 2 2 1 Cystatin domain NusA_N PF08529.11 gi|89256520|ref|YP_513882.1| - 0.089 13.2 0.0 0.14 12.6 0.0 1.3 1 0 0 1 1 1 0 NusA N-terminal domain cobW PF02492.19 gi|89256521|ref|YP_513883.1| - 4.4e-53 179.5 3.2 5.8e-53 179.1 3.2 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CobW_C PF07683.14 gi|89256521|ref|YP_513883.1| - 1e-23 83.1 0.0 2.6e-23 81.8 0.0 1.7 1 0 0 1 1 1 1 Cobalamin synthesis protein cobW C-terminal domain RsgA_GTPase PF03193.16 gi|89256521|ref|YP_513883.1| - 0.00069 19.6 1.6 1.1 9.1 0.0 2.7 2 0 0 2 2 2 2 RsgA GTPase MobB PF03205.14 gi|89256521|ref|YP_513883.1| - 0.0021 17.9 0.0 0.0052 16.7 0.0 1.7 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B T2SSE PF00437.20 gi|89256521|ref|YP_513883.1| - 0.023 13.7 1.1 0.045 12.8 0.0 1.8 2 0 0 2 2 2 0 Type II/IV secretion system protein TsaE PF02367.17 gi|89256521|ref|YP_513883.1| - 0.039 13.9 0.1 0.1 12.6 0.1 1.7 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Viral_helicase1 PF01443.18 gi|89256521|ref|YP_513883.1| - 0.041 13.6 0.0 0.077 12.7 0.0 1.5 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase HCBP_related PF06594.11 gi|89256521|ref|YP_513883.1| - 0.047 13.6 0.4 11 6.1 0.1 3.5 3 1 0 3 3 3 0 Haemolysin-type calcium binding protein related domain ABC_tran PF00005.27 gi|89256521|ref|YP_513883.1| - 0.084 13.4 0.2 0.16 12.5 0.2 1.8 1 1 0 1 1 1 0 ABC transporter AIM5 PF17050.5 gi|89256521|ref|YP_513883.1| - 0.2 12.5 0.9 0.78 10.6 0.3 2.2 2 0 0 2 2 2 0 Altered inheritance of mitochondria 5 AAA_14 PF13173.6 gi|89256521|ref|YP_513883.1| - 0.31 11.1 3.7 0.58 10.2 0.0 2.8 3 1 0 3 3 3 0 AAA domain Zip PF02535.22 gi|89256522|ref|YP_513884.1| - 6.2e-30 104.6 24.2 3.9e-21 75.6 12.3 2.0 1 1 1 2 2 2 2 ZIP Zinc transporter Acid_phosphat_B PF03767.14 gi|89256523|ref|YP_513885.1| - 6.5e-08 32.4 0.1 0.00088 18.9 0.0 2.2 1 1 1 2 2 2 2 HAD superfamily, subfamily IIIB (Acid phosphatase) Corona_NSP4_C PF16348.5 gi|89256523|ref|YP_513885.1| - 0.68 10.8 3.8 1.4 9.7 0.1 2.8 3 0 0 3 3 3 0 Coronavirus nonstructural protein 4 C-terminus PLDc_2 PF13091.6 gi|89256524|ref|YP_513886.1| - 6.3e-46 155.6 4.9 5.8e-27 94.2 0.9 2.5 2 0 0 2 2 2 2 PLD-like domain PLDc PF00614.22 gi|89256524|ref|YP_513886.1| - 6.2e-08 32.5 6.9 0.0005 20.1 0.4 3.6 3 0 0 3 3 3 2 Phospholipase D Active site motif PLDc_N PF13396.6 gi|89256524|ref|YP_513886.1| - 6.5e-05 22.8 7.0 6.5e-05 22.8 7.0 2.1 2 0 0 2 2 2 1 Phospholipase_D-nuclease N-terminal Ac76 PF05814.11 gi|89256524|ref|YP_513886.1| - 0.12 12.4 4.9 0.052 13.6 1.5 2.2 2 0 0 2 2 2 0 Orf76 (Ac76) PLDc_2 PF13091.6 gi|89256525|ref|YP_513887.1| - 1.2e-46 157.8 3.9 6e-29 100.6 0.4 2.2 2 0 0 2 2 2 2 PLD-like domain PLDc PF00614.22 gi|89256525|ref|YP_513887.1| - 3.6e-12 45.9 2.8 1e-05 25.5 0.1 2.8 3 0 0 3 3 3 2 Phospholipase D Active site motif PLDc_N PF13396.6 gi|89256525|ref|YP_513887.1| - 9.9e-05 22.2 8.7 9.9e-05 22.2 8.7 2.6 3 0 0 3 3 3 1 Phospholipase_D-nuclease N-terminal Ac76 PF05814.11 gi|89256525|ref|YP_513887.1| - 0.17 11.9 4.8 0.055 13.5 1.4 2.0 2 0 0 2 2 2 0 Orf76 (Ac76) PP_kinase_C PF13090.6 gi|89256525|ref|YP_513887.1| - 0.78 9.2 4.3 0.86 9.1 0.1 2.5 3 0 0 3 3 3 0 Polyphosphate kinase C-terminal domain 2 MFS_1 PF07690.16 gi|89256526|ref|YP_513888.1| - 5.9e-05 22.2 17.6 7.4e-05 21.8 17.6 1.2 1 0 0 1 1 1 1 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|89256526|ref|YP_513888.1| - 0.26 10.1 10.1 0.32 9.8 10.1 1.1 1 0 0 1 1 1 0 MFS_1 like family Sugar_tr PF00083.24 gi|89256527|ref|YP_513889.1| - 6.3e-11 41.8 8.7 6.9e-11 41.7 8.7 1.1 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|89256527|ref|YP_513889.1| - 9.6e-11 41.2 13.0 1.2e-10 40.8 13.0 1.2 1 0 0 1 1 1 1 Major Facilitator Superfamily YwiC PF14256.6 gi|89256527|ref|YP_513889.1| - 0.0098 16.2 3.0 0.018 15.4 3.0 1.4 1 0 0 1 1 1 1 YwiC-like protein MFS_3 PF05977.13 gi|89256527|ref|YP_513889.1| - 0.037 12.4 0.1 0.045 12.1 0.1 1.1 1 0 0 1 1 1 0 Transmembrane secretion effector PTPS_related PF10131.9 gi|89256527|ref|YP_513889.1| - 0.11 10.8 1.7 0.12 10.7 1.7 1.1 1 0 0 1 1 1 0 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein ParA PF10609.9 gi|89256528|ref|YP_513890.1| - 2.2e-99 331.9 0.1 2.6e-99 331.7 0.1 1.0 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|89256528|ref|YP_513890.1| - 3.2e-17 62.8 0.0 4.6e-17 62.3 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|89256528|ref|YP_513890.1| - 1.5e-09 38.0 3.0 4.8e-08 33.1 3.0 2.3 1 1 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.15 gi|89256528|ref|YP_513890.1| - 1.9e-09 37.1 0.4 1e-05 24.9 0.1 2.4 2 1 0 2 2 2 2 Anion-transporting ATPase MipZ PF09140.11 gi|89256528|ref|YP_513890.1| - 3.9e-09 36.2 0.0 5.3e-09 35.7 0.0 1.1 1 0 0 1 1 1 1 ATPase MipZ Fer4_NifH PF00142.18 gi|89256528|ref|YP_513890.1| - 6.2e-08 32.4 0.1 2.8e-07 30.3 0.1 1.9 1 1 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family SRP54 PF00448.22 gi|89256528|ref|YP_513890.1| - 0.003 17.2 0.0 0.0054 16.4 0.0 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain MeaB PF03308.16 gi|89256528|ref|YP_513890.1| - 0.0063 15.5 0.1 0.01 14.8 0.1 1.3 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_25 PF13481.6 gi|89256528|ref|YP_513890.1| - 0.0068 16.0 0.0 0.013 15.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain A2L_zn_ribbon PF08792.10 gi|89256528|ref|YP_513890.1| - 0.011 15.5 0.1 0.011 15.5 0.1 1.7 2 0 0 2 2 1 0 A2L zinc ribbon domain AAA_26 PF13500.6 gi|89256528|ref|YP_513890.1| - 0.015 15.2 0.3 7.3 6.4 0.0 2.7 2 1 0 2 2 2 0 AAA domain CBP_BcsQ PF06564.12 gi|89256528|ref|YP_513890.1| - 0.022 14.3 0.2 0.2 11.1 0.1 2.0 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsQ VirC1 PF07015.11 gi|89256528|ref|YP_513890.1| - 0.027 13.8 0.2 0.073 12.4 0.0 1.7 2 0 0 2 2 2 0 VirC1 protein DUF1610 PF07754.11 gi|89256528|ref|YP_513890.1| - 0.064 13.2 0.8 0.69 9.9 0.3 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) RsgA_GTPase PF03193.16 gi|89256528|ref|YP_513890.1| - 0.072 13.0 2.1 0.079 12.9 0.1 2.0 3 0 0 3 3 3 0 RsgA GTPase CLP1_P PF16575.5 gi|89256528|ref|YP_513890.1| - 0.078 12.8 0.0 0.16 11.7 0.0 1.5 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop NB-ARC PF00931.22 gi|89256528|ref|YP_513890.1| - 0.095 11.9 0.2 0.16 11.1 0.2 1.3 1 0 0 1 1 1 0 NB-ARC domain dUTPase PF00692.19 gi|89256529|ref|YP_513891.1| - 1.4e-06 28.0 0.0 1.2e-05 25.0 0.0 2.1 2 0 0 2 2 2 1 dUTPase MS_channel PF00924.18 gi|89256530|ref|YP_513892.1| - 2.8e-41 141.3 2.7 3.9e-40 137.6 2.7 1.9 1 1 0 1 1 1 1 Mechanosensitive ion channel LptE PF04390.12 gi|89256532|ref|YP_513894.1| - 1.1e-06 29.3 1.9 1.4e-06 28.9 1.9 1.1 1 0 0 1 1 1 1 Lipopolysaccharide-assembly Adhesin_P1 PF03257.13 gi|89256532|ref|YP_513894.1| - 0.0011 19.5 1.4 0.047 14.2 0.0 2.6 1 1 1 2 2 2 2 Mycoplasma adhesin P1 tRNA-synt_1 PF00133.22 gi|89256533|ref|YP_513895.1| - 2.3e-83 280.5 10.8 1.6e-49 168.7 13.2 4.9 1 1 1 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1_2 PF13603.6 gi|89256533|ref|YP_513895.1| - 6.3e-79 263.8 0.6 1.1e-78 263.0 0.6 1.4 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1g PF09334.11 gi|89256533|ref|YP_513895.1| - 9.9e-34 116.7 2.1 1.5e-21 76.6 0.0 5.0 3 2 1 5 5 5 3 tRNA synthetases class I (M) Anticodon_1 PF08264.13 gi|89256533|ref|YP_513895.1| - 9.8e-17 61.3 0.1 4.5e-16 59.2 0.1 2.2 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.19 gi|89256533|ref|YP_513895.1| - 7.9e-09 35.3 0.0 0.0001 21.8 0.0 2.6 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|89256533|ref|YP_513895.1| - 6e-07 28.7 0.1 0.002 17.1 0.1 3.2 3 0 0 3 3 3 2 tRNA synthetases class I (K) zf-ribbon_3 PF13248.6 gi|89256533|ref|YP_513895.1| - 0.0057 16.0 2.4 1.5 8.4 0.3 2.5 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.7 gi|89256533|ref|YP_513895.1| - 0.029 14.4 0.2 0.098 12.7 0.1 1.9 1 1 1 2 2 2 0 Double zinc ribbon Lar_restr_allev PF14354.6 gi|89256533|ref|YP_513895.1| - 0.13 12.6 0.3 4.2 7.8 0.0 2.5 2 0 0 2 2 2 0 Restriction alleviation protein Lar DUF4852 PF16144.5 gi|89256533|ref|YP_513895.1| - 0.23 11.6 3.5 0.19 11.9 0.3 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4852) DUF3857 PF12969.7 gi|89256534|ref|YP_513896.1| - 1.5e-16 61.0 1.7 2.5e-16 60.2 1.7 1.4 1 0 0 1 1 1 1 Domain of Unknown Function with PDB structure (DUF3857) Transglut_core PF01841.19 gi|89256534|ref|YP_513896.1| - 7.4e-05 23.2 0.0 0.00016 22.1 0.0 1.5 1 0 0 1 1 1 1 Transglutaminase-like superfamily DUF553 PF04473.12 gi|89256534|ref|YP_513896.1| - 0.0033 17.0 1.7 0.0043 16.6 0.2 2.1 2 1 0 2 2 2 1 Transglutaminase-like domain Sel1 PF08238.12 gi|89256535|ref|YP_513897.1| - 9.9e-08 32.4 2.7 1.2e-07 32.1 0.2 2.2 2 1 0 2 2 2 1 Sel1 repeat TPR_8 PF13181.6 gi|89256535|ref|YP_513897.1| - 0.028 14.6 0.6 0.028 14.6 0.6 2.7 2 2 1 3 3 3 0 Tetratricopeptide repeat MRP-63 PF14978.6 gi|89256535|ref|YP_513897.1| - 0.051 14.2 0.1 0.067 13.8 0.1 1.3 1 1 0 1 1 1 0 Mitochondrial ribosome protein 63 DUF3087 PF11286.8 gi|89256535|ref|YP_513897.1| - 0.079 12.4 1.7 0.65 9.5 0.2 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3087) TPR_2 PF07719.17 gi|89256535|ref|YP_513897.1| - 0.2 11.9 6.0 0.77 10.0 0.4 3.0 2 1 1 3 3 3 0 Tetratricopeptide repeat RuvX PF03652.15 gi|89256536|ref|YP_513898.1| - 1.1e-34 119.7 0.1 1.2e-34 119.6 0.1 1.0 1 0 0 1 1 1 1 Holliday junction resolvase Endonuc_Holl PF10107.9 gi|89256536|ref|YP_513898.1| - 0.011 15.6 0.5 0.015 15.1 0.5 1.1 1 0 0 1 1 1 0 Endonuclease related to archaeal Holliday junction resolvase DUF179 PF02622.15 gi|89256537|ref|YP_513899.1| - 2.9e-40 137.8 0.0 3.4e-40 137.6 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized ACR, COG1678 Glyco_hydro_101 PF12905.7 gi|89256537|ref|YP_513899.1| - 0.033 13.6 0.1 0.04 13.3 0.1 1.1 1 0 0 1 1 1 0 Endo-alpha-N-acetylgalactosaminidase Ten1 PF12658.7 gi|89256538|ref|YP_513900.1| - 0.04 13.9 0.0 0.41 10.6 0.1 2.0 2 1 0 2 2 2 0 Telomere capping, CST complex subunit Rsm22 PF09243.10 gi|89256538|ref|YP_513900.1| - 0.044 13.1 1.3 0.64 9.2 0.5 2.0 1 1 1 2 2 2 0 Mitochondrial small ribosomal subunit Rsm22 FAM150 PF15129.6 gi|89256538|ref|YP_513900.1| - 0.069 13.3 0.8 0.13 12.4 0.8 1.4 1 1 0 1 1 1 0 FAM150 family PAS PF00989.25 gi|89256539|ref|YP_513901.1| - 3.9e-06 26.8 0.0 9.2e-06 25.6 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.10 gi|89256539|ref|YP_513901.1| - 4.5e-06 26.9 0.0 7.1e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|89256539|ref|YP_513901.1| - 0.00058 20.1 2.3 0.0022 18.2 0.5 2.3 2 0 0 2 2 2 1 PAS domain H_kinase_N PF12282.8 gi|89256539|ref|YP_513901.1| - 0.015 15.2 0.0 0.029 14.3 0.0 1.4 1 1 0 1 1 1 0 Signal transduction histidine kinase Aminotran_1_2 PF00155.21 gi|89256540|ref|YP_513902.1| - 3.4e-18 65.9 0.0 5.1e-18 65.4 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II OKR_DC_1 PF01276.20 gi|89256540|ref|YP_513902.1| - 0.034 12.9 0.0 0.061 12.1 0.0 1.4 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain G3P_antiterm PF04309.12 gi|89256540|ref|YP_513902.1| - 0.06 12.8 1.4 0.14 11.6 0.1 2.2 3 0 0 3 3 3 0 Glycerol-3-phosphate responsive antiterminator AA_permease PF00324.21 gi|89256541|ref|YP_513903.1| - 3e-99 332.8 62.8 3.7e-99 332.5 62.8 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.6 gi|89256541|ref|YP_513903.1| - 9.4e-41 140.0 61.4 1.2e-40 139.6 61.4 1.0 1 0 0 1 1 1 1 Amino acid permease Flagellin_N PF00669.20 gi|89256542|ref|YP_513904.1| - 0.041 14.0 0.1 0.055 13.6 0.1 1.1 1 0 0 1 1 1 0 Bacterial flagellin N-terminal helical region MerC PF03203.14 gi|89256542|ref|YP_513904.1| - 0.12 12.8 1.9 0.21 12.0 0.5 1.9 2 0 0 2 2 2 0 MerC mercury resistance protein HTH_34 PF13601.6 gi|89256543|ref|YP_513905.1| - 1.4e-30 105.3 0.2 1.6e-30 105.1 0.2 1.0 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.7 gi|89256543|ref|YP_513905.1| - 0.00011 22.2 0.0 0.00014 21.8 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|89256543|ref|YP_513905.1| - 0.00084 19.2 0.0 0.0012 18.6 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.6 gi|89256543|ref|YP_513905.1| - 0.0032 17.9 0.0 0.0044 17.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF1803 PF08820.10 gi|89256543|ref|YP_513905.1| - 0.009 16.0 0.1 0.0093 16.0 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1803) DUF1495 PF07381.11 gi|89256543|ref|YP_513905.1| - 0.013 15.3 0.2 0.8 9.6 0.2 2.1 1 1 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) HTH_24 PF13412.6 gi|89256543|ref|YP_513905.1| - 0.068 12.7 0.0 0.28 10.8 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|89256543|ref|YP_513905.1| - 0.081 12.9 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 MarR family HxlR PF01638.17 gi|89256543|ref|YP_513905.1| - 0.16 11.8 0.0 0.2 11.5 0.0 1.2 1 0 0 1 1 1 0 HxlR-like helix-turn-helix DUF3293 PF11697.8 gi|89256544|ref|YP_513906.1| - 0.00021 21.7 0.0 0.00027 21.3 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3293) ELK PF03789.13 gi|89256544|ref|YP_513906.1| - 0.043 13.9 1.6 0.07 13.2 1.6 1.3 1 0 0 1 1 1 0 ELK domain Thioredoxin PF00085.20 gi|89256545|ref|YP_513907.1| - 1.1e-31 108.9 0.2 1.2e-31 108.8 0.2 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_8 PF13905.6 gi|89256545|ref|YP_513907.1| - 2.9e-10 40.4 0.1 7.4e-08 32.6 0.1 2.2 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_2 PF13098.6 gi|89256545|ref|YP_513907.1| - 8.4e-10 39.1 0.1 1.2e-08 35.3 0.1 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain TraF PF13728.6 gi|89256545|ref|YP_513907.1| - 9.5e-08 32.1 0.0 1.1e-07 31.9 0.0 1.1 1 0 0 1 1 1 1 F plasmid transfer operon protein OST3_OST6 PF04756.13 gi|89256545|ref|YP_513907.1| - 1.2e-06 28.2 0.1 1.3e-06 28.0 0.1 1.1 1 0 0 1 1 1 1 OST3 / OST6 family, transporter family AhpC-TSA PF00578.21 gi|89256545|ref|YP_513907.1| - 1.3e-05 25.1 0.1 1.4e-05 25.0 0.1 1.2 1 0 0 1 1 1 1 AhpC/TSA family Thioredoxin_9 PF14595.6 gi|89256545|ref|YP_513907.1| - 1.8e-05 24.5 0.0 2e-05 24.4 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_7 PF13899.6 gi|89256545|ref|YP_513907.1| - 1.9e-05 24.7 0.1 4.4e-05 23.6 0.1 1.6 1 1 0 1 1 1 1 Thioredoxin-like HyaE PF07449.11 gi|89256545|ref|YP_513907.1| - 0.00012 22.0 0.1 0.00018 21.5 0.1 1.5 1 1 0 1 1 1 1 Hydrogenase-1 expression protein HyaE Redoxin PF08534.10 gi|89256545|ref|YP_513907.1| - 0.00031 20.5 0.1 0.0004 20.1 0.1 1.3 1 1 0 1 1 1 1 Redoxin DUF836 PF05768.14 gi|89256545|ref|YP_513907.1| - 0.0012 19.2 0.0 0.0017 18.7 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Phosducin PF02114.16 gi|89256545|ref|YP_513907.1| - 0.003 16.6 0.0 0.0034 16.4 0.0 1.0 1 0 0 1 1 1 1 Phosducin DIM1 PF02966.16 gi|89256545|ref|YP_513907.1| - 0.0084 15.9 0.1 0.0098 15.7 0.1 1.1 1 0 0 1 1 1 1 Mitosis protein DIM1 DSBA PF01323.20 gi|89256545|ref|YP_513907.1| - 0.014 15.1 0.1 0.38 10.5 0.0 2.0 1 1 1 2 2 2 0 DSBA-like thioredoxin domain Glutaredoxin PF00462.24 gi|89256545|ref|YP_513907.1| - 0.016 15.4 0.0 0.025 14.8 0.0 1.4 1 0 0 1 1 1 0 Glutaredoxin Thioredoxin_6 PF13848.6 gi|89256545|ref|YP_513907.1| - 0.021 14.7 0.1 0.025 14.5 0.1 1.1 1 0 0 1 1 1 0 Thioredoxin-like domain Thioredoxin_5 PF13743.6 gi|89256545|ref|YP_513907.1| - 0.022 14.4 0.1 0.043 13.5 0.0 1.5 1 1 1 2 2 2 0 Thioredoxin DUF953 PF06110.11 gi|89256545|ref|YP_513907.1| - 0.025 14.2 0.2 0.12 12.0 0.2 2.0 1 1 0 1 1 1 0 Eukaryotic protein of unknown function (DUF953) PSP94 PF05825.11 gi|89256546|ref|YP_513908.1| - 0.021 15.4 0.2 0.058 14.0 0.1 1.8 1 1 0 1 1 1 0 Beta-microseminoprotein (PSP-94) 3H PF02829.14 gi|89256546|ref|YP_513908.1| - 0.22 11.8 2.5 2.2 8.7 0.3 2.5 1 1 1 2 2 2 0 3H domain KxDL PF10241.9 gi|89256546|ref|YP_513908.1| - 0.66 10.3 6.7 1.2 9.5 0.3 2.6 2 1 0 2 2 2 0 Uncharacterized conserved protein UPF0051 PF01458.17 gi|89256547|ref|YP_513909.1| - 5.2e-51 173.4 0.4 6.9e-51 173.0 0.4 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) SoxE PF06525.11 gi|89256547|ref|YP_513909.1| - 0.53 9.8 5.9 0.1 12.1 1.0 2.0 2 0 0 2 2 2 0 Sulfocyanin (SoxE) domain DUF1433 PF07252.11 gi|89256547|ref|YP_513909.1| - 0.71 10.2 8.3 0.91 9.8 0.2 3.3 3 1 0 3 3 3 0 Protein of unknown function (DUF1433) ABC_tran PF00005.27 gi|89256548|ref|YP_513910.1| - 1.4e-22 80.7 0.4 2e-22 80.2 0.4 1.2 1 0 0 1 1 1 1 ABC transporter RsgA_GTPase PF03193.16 gi|89256548|ref|YP_513910.1| - 3.5e-05 23.8 0.2 7.1e-05 22.8 0.2 1.5 1 0 0 1 1 1 1 RsgA GTPase SMC_N PF02463.19 gi|89256548|ref|YP_513910.1| - 4.2e-05 23.1 4.7 0.0013 18.3 4.8 2.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|89256548|ref|YP_513910.1| - 0.002 17.8 0.3 0.0049 16.6 0.1 1.7 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_13 PF13166.6 gi|89256548|ref|YP_513910.1| - 0.0021 16.8 0.7 0.0082 14.8 0.1 1.8 1 1 1 2 2 2 1 AAA domain AAA_27 PF13514.6 gi|89256548|ref|YP_513910.1| - 0.0081 15.8 0.1 0.016 14.8 0.1 1.4 1 0 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.23 gi|89256548|ref|YP_513910.1| - 0.0095 16.0 0.2 0.016 15.2 0.2 1.5 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_21 PF13304.6 gi|89256548|ref|YP_513910.1| - 0.017 15.0 1.5 0.12 12.1 1.3 2.1 1 1 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system Cytidylate_kin PF02224.18 gi|89256548|ref|YP_513910.1| - 0.017 14.8 0.2 0.036 13.8 0.2 1.7 1 1 0 1 1 1 0 Cytidylate kinase AAA_23 PF13476.6 gi|89256548|ref|YP_513910.1| - 0.019 15.5 1.1 0.037 14.5 0.1 1.8 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.15 gi|89256548|ref|YP_513910.1| - 0.024 14.6 0.0 0.044 13.7 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_18 PF13238.6 gi|89256548|ref|YP_513910.1| - 0.029 14.9 0.2 0.051 14.1 0.2 1.8 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|89256548|ref|YP_513910.1| - 0.033 14.3 0.0 0.045 13.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|89256548|ref|YP_513910.1| - 0.043 14.1 0.2 0.13 12.5 0.1 1.8 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|89256548|ref|YP_513910.1| - 0.043 13.4 0.0 0.098 12.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain Ploopntkinase1 PF18748.1 gi|89256548|ref|YP_513910.1| - 0.087 12.3 0.0 0.24 10.9 0.0 1.7 2 0 0 2 2 2 0 P-loop Nucleotide Kinase1 AAA PF00004.29 gi|89256548|ref|YP_513910.1| - 0.2 12.1 1.0 1.6 9.2 1.0 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) UPF0051 PF01458.17 gi|89256549|ref|YP_513911.1| - 2.2e-67 227.0 0.2 2.8e-67 226.6 0.2 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) Rrf2 PF02082.20 gi|89256550|ref|YP_513912.1| - 7.9e-20 71.0 0.1 1.4e-19 70.2 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator HrcA_DNA-bdg PF03444.15 gi|89256550|ref|YP_513912.1| - 0.00067 19.3 0.0 0.001 18.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_Crp_2 PF13545.6 gi|89256550|ref|YP_513912.1| - 0.002 18.0 0.1 0.0051 16.8 0.0 1.7 1 1 1 2 2 2 1 Crp-like helix-turn-helix domain HTH_24 PF13412.6 gi|89256550|ref|YP_513912.1| - 0.0056 16.2 0.2 0.066 12.8 0.0 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding TFIIE_alpha PF02002.17 gi|89256550|ref|YP_513912.1| - 0.011 15.5 0.0 0.022 14.6 0.0 1.6 2 0 0 2 2 2 0 TFIIE alpha subunit HTH_36 PF13730.6 gi|89256550|ref|YP_513912.1| - 0.012 15.5 0.0 0.025 14.5 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_IclR PF09339.10 gi|89256550|ref|YP_513912.1| - 0.014 15.2 0.0 0.023 14.5 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain FaeA PF04703.12 gi|89256550|ref|YP_513912.1| - 0.035 14.5 0.0 0.12 12.7 0.0 1.8 2 0 0 2 2 2 0 FaeA-like protein TrmB PF01978.19 gi|89256550|ref|YP_513912.1| - 0.035 14.0 0.1 0.28 11.1 0.0 2.3 2 1 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|89256550|ref|YP_513912.1| - 0.039 13.8 0.2 0.16 11.8 0.0 2.1 3 0 0 3 3 3 0 Bacterial regulatory protein, arsR family GntR PF00392.21 gi|89256550|ref|YP_513912.1| - 0.12 12.1 0.0 0.19 11.4 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family CRAM_rpt PF07016.11 gi|89256550|ref|YP_513912.1| - 0.58 10.0 5.4 1.1 9.1 5.4 1.4 1 0 0 1 1 1 0 Cysteine-rich acidic integral membrane protein precursor TrkA_N PF02254.18 gi|89256551|ref|YP_513913.1| - 1.5e-40 138.0 2.1 1.7e-22 79.8 0.1 2.9 3 0 0 3 3 3 2 TrkA-N domain TrkA_C PF02080.21 gi|89256551|ref|YP_513913.1| - 4.8e-11 42.3 1.1 8.9e-05 22.3 0.2 2.5 2 0 0 2 2 2 2 TrkA-C domain NAD_binding_7 PF13241.6 gi|89256551|ref|YP_513913.1| - 4.7e-05 23.8 0.0 0.096 13.1 0.0 2.5 2 0 0 2 2 2 2 Putative NAD(P)-binding UDPG_MGDP_dh_N PF03721.14 gi|89256551|ref|YP_513913.1| - 0.031 13.8 0.3 0.2 11.2 0.1 2.4 3 1 0 3 3 3 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Atypical_Card PF18461.1 gi|89256551|ref|YP_513913.1| - 0.042 14.1 0.1 0.1 12.8 0.1 1.6 1 0 0 1 1 1 0 Atypical caspase recruitment domain DUF211 PF02680.14 gi|89256551|ref|YP_513913.1| - 0.052 13.7 1.5 2.6 8.3 0.1 3.5 3 0 0 3 3 3 0 Uncharacterized ArCR, COG1888 F420_oxidored PF03807.17 gi|89256551|ref|YP_513913.1| - 0.053 14.1 0.1 0.22 12.1 0.0 2.2 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_C PF03720.15 gi|89256551|ref|YP_513913.1| - 0.074 13.5 0.2 0.32 11.4 0.0 2.1 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AA_permease_2 PF13520.6 gi|89256552|ref|YP_513914.1| - 3.2e-64 217.3 54.0 3.2e-64 217.3 54.0 1.6 1 1 1 2 2 2 1 Amino acid permease AA_permease PF00324.21 gi|89256552|ref|YP_513914.1| - 8.3e-17 60.9 50.6 9.8e-17 60.7 50.6 1.0 1 0 0 1 1 1 1 Amino acid permease ECF_trnsprt PF12822.7 gi|89256553|ref|YP_513915.1| - 0.86 9.7 17.9 1.1 9.3 17.9 1.1 1 0 0 1 1 1 0 ECF transporter, substrate-specific component eIF-1a PF01176.19 gi|89256554|ref|YP_513916.1| - 2e-27 94.8 0.3 2.2e-27 94.6 0.3 1.0 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 RsgA_N PF16745.5 gi|89256554|ref|YP_513916.1| - 2.3e-05 24.1 0.2 3e-05 23.7 0.1 1.4 1 1 0 1 1 1 1 RsgA N-terminal domain S1 PF00575.23 gi|89256554|ref|YP_513916.1| - 0.023 15.0 0.1 0.03 14.7 0.1 1.2 1 0 0 1 1 1 0 S1 RNA binding domain CSD2 PF17876.1 gi|89256554|ref|YP_513916.1| - 0.034 14.3 0.1 0.15 12.3 0.1 2.0 1 1 2 3 3 3 0 Cold shock domain Myosin_N PF02736.19 gi|89256554|ref|YP_513916.1| - 0.096 12.5 0.0 7.7 6.4 0.0 2.4 2 0 0 2 2 2 0 Myosin N-terminal SH3-like domain Ig_mannosidase PF17753.1 gi|89256554|ref|YP_513916.1| - 0.18 11.5 0.0 0.22 11.3 0.0 1.1 1 0 0 1 1 1 0 Ig-fold domain TauE PF01925.19 gi|89256555|ref|YP_513917.1| - 2e-44 152.0 36.0 2.5e-44 151.7 36.0 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF5592 PF17332.2 gi|89256555|ref|YP_513917.1| - 0.34 11.5 7.3 2.8 8.6 0.9 2.8 2 1 0 2 2 2 0 Family of unknown function (DUF5592) TMEM141 PF15110.6 gi|89256555|ref|YP_513917.1| - 2.8 8.6 6.8 4.5 7.9 1.1 2.7 2 1 1 3 3 3 0 TMEM141 protein family DUF1634 PF07843.11 gi|89256556|ref|YP_513918.1| - 7.7e-10 38.8 9.5 7.7e-10 38.8 9.5 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF1634) DUF4181 PF13789.6 gi|89256556|ref|YP_513918.1| - 0.12 12.6 14.2 0.13 12.5 14.2 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4181) Peptidase_M48_N PF16491.5 gi|89256556|ref|YP_513918.1| - 1.3 8.9 10.3 0.27 11.1 6.8 1.6 1 1 0 1 1 1 0 CAAX prenyl protease N-terminal, five membrane helices S_4TM PF18159.1 gi|89256556|ref|YP_513918.1| - 2.4 7.4 5.6 1.5 8.1 3.9 1.4 1 1 1 2 2 2 0 SMODS-associating 4TM effector domain DUF2070 PF09843.9 gi|89256556|ref|YP_513918.1| - 4 5.6 11.5 4.4 5.5 11.5 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) YtpI PF14007.6 gi|89256556|ref|YP_513918.1| - 6.9 6.9 15.1 0.13 12.5 1.5 2.5 1 1 1 2 2 2 0 YtpI-like protein SdpI PF13630.6 gi|89256556|ref|YP_513918.1| - 8.6 6.6 12.5 1.9e+02 2.2 12.5 2.1 1 1 0 1 1 1 0 SdpI/YhfL protein family SRP54 PF00448.22 gi|89256557|ref|YP_513919.1| - 7.4e-75 250.9 3.2 1.5e-74 249.9 3.2 1.5 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.19 gi|89256557|ref|YP_513919.1| - 6.9e-31 106.8 4.5 6.9e-31 106.8 4.5 3.8 4 0 0 4 4 4 1 Signal peptide binding domain SRP54_N PF02881.19 gi|89256557|ref|YP_513919.1| - 7.6e-20 70.9 2.4 7.6e-20 70.9 2.4 3.1 3 0 0 3 3 2 1 SRP54-type protein, helical bundle domain CbiA PF01656.23 gi|89256557|ref|YP_513919.1| - 3.7e-08 33.5 0.0 1.7e-07 31.3 0.0 2.2 2 1 0 2 2 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Zeta_toxin PF06414.12 gi|89256557|ref|YP_513919.1| - 5.6e-08 32.3 0.1 1.2e-07 31.2 0.1 1.5 1 0 0 1 1 1 1 Zeta toxin AAA_22 PF13401.6 gi|89256557|ref|YP_513919.1| - 4.8e-07 30.1 0.3 2.2e-06 28.0 0.0 2.1 2 1 1 3 3 3 1 AAA domain AAA_33 PF13671.6 gi|89256557|ref|YP_513919.1| - 0.00094 19.4 0.2 0.0022 18.2 0.0 1.8 2 0 0 2 2 1 1 AAA domain cobW PF02492.19 gi|89256557|ref|YP_513919.1| - 0.001 18.7 1.7 0.0031 17.1 1.7 1.8 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain APS_kinase PF01583.20 gi|89256557|ref|YP_513919.1| - 0.001 19.0 0.1 0.0045 16.9 0.0 2.1 2 0 0 2 2 2 1 Adenylylsulphate kinase Thymidylate_kin PF02223.17 gi|89256557|ref|YP_513919.1| - 0.0012 18.5 0.2 0.0045 16.7 0.1 2.0 2 0 0 2 2 1 1 Thymidylate kinase 6PF2K PF01591.18 gi|89256557|ref|YP_513919.1| - 0.0014 18.0 0.0 0.003 16.9 0.0 1.5 1 0 0 1 1 1 1 6-phosphofructo-2-kinase AAA_24 PF13479.6 gi|89256557|ref|YP_513919.1| - 0.0023 17.7 1.2 0.0048 16.6 0.3 2.0 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|89256557|ref|YP_513919.1| - 0.0026 17.5 0.3 0.0065 16.2 0.3 1.7 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|89256557|ref|YP_513919.1| - 0.0026 18.2 0.0 0.0094 16.3 0.0 1.9 2 1 0 2 2 1 1 AAA ATPase domain AAA_31 PF13614.6 gi|89256557|ref|YP_513919.1| - 0.0027 17.6 1.4 0.0027 17.6 1.4 2.5 3 1 0 3 3 2 1 AAA domain ParA PF10609.9 gi|89256557|ref|YP_513919.1| - 0.0036 16.8 0.3 0.039 13.4 0.1 2.4 2 1 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase KAP_NTPase PF07693.14 gi|89256557|ref|YP_513919.1| - 0.0039 16.5 1.0 0.0091 15.3 0.3 2.3 1 1 1 2 2 2 1 KAP family P-loop domain DUF2075 PF09848.9 gi|89256557|ref|YP_513919.1| - 0.0041 16.4 0.2 0.011 15.0 0.2 1.7 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_28 PF13521.6 gi|89256557|ref|YP_513919.1| - 0.0055 17.0 0.0 0.0099 16.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain KTI12 PF08433.10 gi|89256557|ref|YP_513919.1| - 0.0063 16.0 2.6 0.01 15.3 0.0 2.3 2 1 0 2 2 2 1 Chromatin associated protein KTI12 ArsA_ATPase PF02374.15 gi|89256557|ref|YP_513919.1| - 0.0088 15.3 0.2 0.0088 15.3 0.2 3.3 3 1 0 4 4 4 1 Anion-transporting ATPase NACHT PF05729.12 gi|89256557|ref|YP_513919.1| - 0.015 15.2 0.0 0.029 14.3 0.0 1.5 1 0 0 1 1 1 0 NACHT domain DnaB_C PF03796.15 gi|89256557|ref|YP_513919.1| - 0.02 14.2 0.9 0.02 14.2 0.9 2.1 2 1 0 2 2 2 0 DnaB-like helicase C terminal domain AAA PF00004.29 gi|89256557|ref|YP_513919.1| - 0.024 15.1 0.5 0.024 15.1 0.5 2.8 3 1 0 3 3 2 0 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.6 gi|89256557|ref|YP_513919.1| - 0.024 14.7 0.3 0.092 12.8 0.3 2.0 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|89256557|ref|YP_513919.1| - 0.029 14.7 0.7 0.063 13.6 0.6 1.6 1 1 0 1 1 1 0 AAA domain G-alpha PF00503.20 gi|89256557|ref|YP_513919.1| - 0.031 13.4 0.1 0.054 12.6 0.1 1.6 1 1 0 1 1 1 0 G-protein alpha subunit ABC_tran PF00005.27 gi|89256557|ref|YP_513919.1| - 0.059 13.9 0.1 1.1 9.8 0.1 2.6 1 1 0 1 1 1 0 ABC transporter TPP_enzyme_M PF00205.22 gi|89256557|ref|YP_513919.1| - 0.063 13.0 0.0 0.33 10.7 0.0 2.1 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, central domain ResIII PF04851.15 gi|89256557|ref|YP_513919.1| - 0.077 13.0 5.1 0.08 12.9 1.1 2.6 1 1 1 2 2 2 0 Type III restriction enzyme, res subunit NTPase_1 PF03266.15 gi|89256557|ref|YP_513919.1| - 0.093 12.6 1.3 2.2 8.2 0.1 2.7 2 0 0 2 2 2 0 NTPase TsaE PF02367.17 gi|89256557|ref|YP_513919.1| - 0.13 12.2 0.2 0.38 10.8 0.2 1.7 1 1 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Adaptin_binding PF10199.9 gi|89256557|ref|YP_513919.1| - 0.4 11.3 5.4 7.7 7.1 0.0 3.1 2 1 0 2 2 2 0 Alpha and gamma adaptin binding protein p34 AAA_25 PF13481.6 gi|89256557|ref|YP_513919.1| - 0.81 9.2 3.9 9.4 5.8 3.9 2.3 1 1 0 1 1 1 0 AAA domain DUF2570 PF10828.8 gi|89256557|ref|YP_513919.1| - 3.4 7.5 6.1 1.3 8.8 0.1 3.1 4 0 0 4 4 3 0 Protein of unknown function (DUF2570) AAA_17 PF13207.6 gi|89256557|ref|YP_513919.1| - 5.9 7.3 9.5 1.4 9.4 0.3 3.2 3 2 0 3 3 3 0 AAA domain DAHP_synth_1 PF00793.20 gi|89256558|ref|YP_513920.1| - 7.2e-96 320.3 0.4 9.2e-96 319.9 0.4 1.1 1 0 0 1 1 1 1 DAHP synthetase I family PGM_PMM_II PF02879.16 gi|89256558|ref|YP_513920.1| - 0.047 14.3 0.4 24 5.6 0.0 3.6 4 0 0 4 4 4 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YlbE PF14003.6 gi|89256558|ref|YP_513920.1| - 0.18 12.3 0.5 1.4 9.4 0.1 2.2 2 0 0 2 2 2 0 YlbE-like protein DDE_3 PF13358.6 gi|89256559|ref|YP_513921.1| - 9.9e-30 103.2 0.2 3.2e-29 101.6 0.0 1.8 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.16 gi|89256559|ref|YP_513921.1| - 0.0029 17.6 1.5 0.0084 16.2 0.6 2.3 2 1 0 2 2 2 1 Transposase HTH_29 PF13551.6 gi|89256559|ref|YP_513921.1| - 0.0033 17.4 0.0 0.008 16.2 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn helix HTH_40 PF14493.6 gi|89256559|ref|YP_513921.1| - 0.011 16.2 0.1 0.069 13.6 0.0 2.3 3 1 0 3 3 3 0 Helix-turn-helix domain HTH_28 PF13518.6 gi|89256559|ref|YP_513921.1| - 0.026 14.6 0.0 0.073 13.2 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain CENP-B_N PF04218.13 gi|89256559|ref|YP_513921.1| - 0.097 12.3 0.0 0.98 9.1 0.0 2.5 3 0 0 3 3 3 0 CENP-B N-terminal DNA-binding domain HTH_23 PF13384.6 gi|89256559|ref|YP_513921.1| - 0.12 12.2 0.0 0.34 10.8 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain rve PF00665.26 gi|89256559|ref|YP_513921.1| - 0.15 12.3 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 Integrase core domain DDE_Tnp_ISAZ013 PF07592.11 gi|89256559|ref|YP_513921.1| - 0.17 10.9 0.3 1.1 8.1 0.1 2.0 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain AstE_AspA PF04952.14 gi|89256561|ref|YP_513923.1| - 0.00012 21.2 0.0 0.00014 21.1 0.0 1.1 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Sdh5 PF03937.16 gi|89256561|ref|YP_513923.1| - 0.0039 17.1 0.3 0.0071 16.3 0.3 1.3 1 0 0 1 1 1 1 Flavinator of succinate dehydrogenase Peptidase_M14 PF00246.24 gi|89256561|ref|YP_513923.1| - 0.011 15.5 0.1 0.024 14.5 0.1 1.5 1 1 0 1 1 1 0 Zinc carboxypeptidase Annexin PF00191.20 gi|89256561|ref|YP_513923.1| - 0.096 12.8 0.1 0.19 11.8 0.1 1.5 1 0 0 1 1 1 0 Annexin Exo_endo_phos PF03372.23 gi|89256562|ref|YP_513924.1| - 5.3e-19 68.7 0.0 6.2e-19 68.4 0.0 1.1 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Exo_endo_phos_2 PF14529.6 gi|89256562|ref|YP_513924.1| - 5.7e-05 23.0 0.1 0.00023 21.0 0.1 2.0 1 1 0 1 1 1 1 Endonuclease-reverse transcriptase COMM_domain PF07258.14 gi|89256562|ref|YP_513924.1| - 0.035 14.2 0.6 0.24 11.5 0.0 2.2 2 0 0 2 2 2 0 COMM domain adh_short_C2 PF13561.6 gi|89256563|ref|YP_513925.1| - 6.5e-47 160.1 0.0 1.1e-46 159.3 0.0 1.3 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|89256563|ref|YP_513925.1| - 6.7e-37 126.9 0.7 1.9e-36 125.4 0.7 1.6 1 1 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|89256563|ref|YP_513925.1| - 0.00055 19.9 0.9 0.29 11.0 0.0 2.1 2 0 0 2 2 2 2 KR domain Epimerase PF01370.21 gi|89256563|ref|YP_513925.1| - 0.00069 19.1 0.0 0.0014 18.1 0.0 1.5 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family AAA_33 PF13671.6 gi|89256564|ref|YP_513926.1| - 6.3e-10 39.4 0.0 8.4e-10 39.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain KTI12 PF08433.10 gi|89256564|ref|YP_513926.1| - 2.9e-06 27.0 0.1 3.8e-06 26.6 0.1 1.1 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_18 PF13238.6 gi|89256564|ref|YP_513926.1| - 1.3e-05 25.8 0.0 3.1e-05 24.5 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|89256564|ref|YP_513926.1| - 0.00019 21.9 0.0 0.00032 21.1 0.0 1.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.6 gi|89256564|ref|YP_513926.1| - 0.00024 21.1 0.1 0.00044 20.3 0.0 1.4 1 1 0 1 1 1 1 AAA domain 6PF2K PF01591.18 gi|89256564|ref|YP_513926.1| - 0.00066 19.1 1.7 0.098 11.9 0.5 2.1 1 1 1 2 2 2 2 6-phosphofructo-2-kinase Parvo_NS1 PF01057.17 gi|89256564|ref|YP_513926.1| - 0.0019 17.3 0.2 0.0034 16.5 0.2 1.3 1 1 0 1 1 1 1 Parvovirus non-structural protein NS1 NACHT PF05729.12 gi|89256564|ref|YP_513926.1| - 0.0029 17.6 0.0 0.0057 16.6 0.0 1.6 1 1 0 1 1 1 1 NACHT domain AAA_5 PF07728.14 gi|89256564|ref|YP_513926.1| - 0.004 17.2 0.1 0.01 15.9 0.1 1.9 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|89256564|ref|YP_513926.1| - 0.004 17.4 0.0 0.0068 16.7 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|89256564|ref|YP_513926.1| - 0.0041 17.5 0.0 0.0045 17.4 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_24 PF13479.6 gi|89256564|ref|YP_513926.1| - 0.0048 16.7 0.2 0.0098 15.6 0.2 1.8 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|89256564|ref|YP_513926.1| - 0.0058 16.9 0.0 0.0085 16.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain SRP54 PF00448.22 gi|89256564|ref|YP_513926.1| - 0.017 14.8 0.1 0.14 11.8 0.1 2.0 1 1 0 1 1 1 0 SRP54-type protein, GTPase domain Mg_chelatase PF01078.21 gi|89256564|ref|YP_513926.1| - 0.02 14.3 0.0 0.032 13.6 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_17 PF13207.6 gi|89256564|ref|YP_513926.1| - 0.021 15.3 0.1 0.14 12.6 0.1 2.0 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|89256564|ref|YP_513926.1| - 0.022 15.1 0.1 0.047 14.1 0.1 1.7 1 1 0 1 1 1 0 RNA helicase PduV-EutP PF10662.9 gi|89256564|ref|YP_513926.1| - 0.027 14.2 1.3 6.1 6.6 0.1 2.5 3 0 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation RuvB_N PF05496.12 gi|89256564|ref|YP_513926.1| - 0.031 14.0 0.0 0.21 11.3 0.0 2.0 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain AAA_3 PF07726.11 gi|89256564|ref|YP_513926.1| - 0.049 13.5 0.0 0.092 12.6 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) APS_kinase PF01583.20 gi|89256564|ref|YP_513926.1| - 0.061 13.2 0.0 0.093 12.6 0.0 1.4 1 1 0 1 1 1 0 Adenylylsulphate kinase SKI PF01202.22 gi|89256564|ref|YP_513926.1| - 0.064 13.4 0.2 0.52 10.4 0.2 1.9 1 1 0 1 1 1 0 Shikimate kinase NTPase_1 PF03266.15 gi|89256564|ref|YP_513926.1| - 0.089 12.7 0.0 0.14 12.1 0.0 1.5 1 0 0 1 1 1 0 NTPase NB-ARC PF00931.22 gi|89256564|ref|YP_513926.1| - 0.096 11.9 0.0 0.16 11.1 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain TsaE PF02367.17 gi|89256564|ref|YP_513926.1| - 0.12 12.4 0.0 0.19 11.7 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE 2_5_RNA_ligase2 PF13563.6 gi|89256565|ref|YP_513927.1| - 3.7e-24 85.4 0.0 4.8e-24 85.0 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily DUF1045 PF06299.12 gi|89256565|ref|YP_513927.1| - 0.00017 21.6 0.0 0.00039 20.4 0.0 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF1045) LigT_PEase PF02834.16 gi|89256565|ref|YP_513927.1| - 0.00091 19.4 0.1 0.013 15.7 0.0 2.4 2 1 0 2 2 2 1 LigT like Phosphoesterase Pyr_redox_2 PF07992.14 gi|89256566|ref|YP_513928.1| - 2.3e-57 194.5 0.6 2.9e-57 194.1 0.6 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|89256566|ref|YP_513928.1| - 3.2e-36 123.9 0.1 6.1e-36 123.0 0.1 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_3 PF13738.6 gi|89256566|ref|YP_513928.1| - 2.3e-19 69.8 5.3 6.7e-16 58.4 0.1 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|89256566|ref|YP_513928.1| - 6.9e-18 65.0 5.1 5.9e-16 58.8 0.3 2.6 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|89256566|ref|YP_513928.1| - 4.5e-07 29.6 0.6 4.5e-07 29.6 0.6 1.9 3 0 0 3 3 3 1 FAD dependent oxidoreductase K_oxygenase PF13434.6 gi|89256566|ref|YP_513928.1| - 3.7e-05 23.0 0.7 0.0079 15.4 0.0 2.4 2 1 1 3 3 3 2 L-lysine 6-monooxygenase (NADPH-requiring) 3HCDH_N PF02737.18 gi|89256566|ref|YP_513928.1| - 0.00085 19.2 0.2 0.00085 19.2 0.2 2.3 3 0 0 3 3 3 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|89256566|ref|YP_513928.1| - 0.00094 19.2 0.9 0.0068 16.4 0.1 2.3 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus GIDA PF01134.22 gi|89256566|ref|YP_513928.1| - 0.001 18.2 0.8 0.001 18.2 0.8 2.6 2 1 0 2 2 2 1 Glucose inhibited division protein A DAO PF01266.24 gi|89256566|ref|YP_513928.1| - 0.0012 18.5 8.3 0.095 12.3 0.5 3.1 3 0 0 3 3 3 2 FAD dependent oxidoreductase AlaDh_PNT_C PF01262.21 gi|89256566|ref|YP_513928.1| - 0.0015 17.9 0.8 0.6 9.4 0.0 2.3 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_8 PF13450.6 gi|89256566|ref|YP_513928.1| - 0.0015 18.7 2.5 0.032 14.5 0.4 2.6 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|89256566|ref|YP_513928.1| - 0.0044 16.2 2.3 0.0044 16.2 2.3 1.9 2 0 0 2 2 2 1 FAD binding domain FAD_binding_3 PF01494.19 gi|89256566|ref|YP_513928.1| - 0.0045 16.3 0.8 0.24 10.6 0.0 2.3 2 0 0 2 2 2 1 FAD binding domain HI0933_like PF03486.14 gi|89256566|ref|YP_513928.1| - 0.013 14.2 9.9 0.018 13.8 1.0 2.8 2 1 1 3 3 3 0 HI0933-like protein Thi4 PF01946.17 gi|89256566|ref|YP_513928.1| - 0.026 13.7 0.7 0.1 11.9 0.2 2.0 2 0 0 2 2 2 0 Thi4 family NAD_binding_7 PF13241.6 gi|89256566|ref|YP_513928.1| - 0.048 14.1 0.3 0.22 12.0 0.0 2.0 2 0 0 2 2 2 0 Putative NAD(P)-binding NAD_binding_9 PF13454.6 gi|89256566|ref|YP_513928.1| - 0.057 13.4 0.6 11 6.0 0.0 3.3 3 0 0 3 3 3 0 FAD-NAD(P)-binding 2-Hacid_dh_C PF02826.19 gi|89256566|ref|YP_513928.1| - 0.062 12.6 5.3 0.37 10.1 0.3 3.3 3 1 1 4 4 4 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YbjQ_1 PF01906.17 gi|89256567|ref|YP_513929.1| - 8.1e-32 110.0 1.8 8.9e-32 109.8 1.8 1.0 1 0 0 1 1 1 1 Putative heavy-metal-binding DUF4156 PF13698.6 gi|89256567|ref|YP_513929.1| - 0.047 14.0 0.1 0.071 13.4 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4156) DDE_Tnp_1_2 PF13586.6 gi|89256568|ref|YP_513930.1| - 1.2e-13 51.2 0.0 2.1e-13 50.5 0.0 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|89256568|ref|YP_513930.1| - 5.2e-12 45.9 2.0 4.6e-11 42.8 2.0 2.0 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 gi|89256568|ref|YP_513930.1| - 7.9e-08 32.5 0.0 1.1e-07 31.9 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF4096 PF13340.6 gi|89256568|ref|YP_513930.1| - 0.0062 16.7 0.0 0.012 15.8 0.0 1.5 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) PTR2 PF00854.21 gi|89256569|ref|YP_513931.1| - 2.4e-59 201.2 26.3 3.6e-59 200.6 26.3 1.2 1 0 0 1 1 1 1 POT family MFS_1 PF07690.16 gi|89256569|ref|YP_513931.1| - 3.9e-14 52.3 64.0 5.1e-09 35.5 31.1 2.5 1 1 1 2 2 2 2 Major Facilitator Superfamily HKR_ArcB_TM PF18415.1 gi|89256569|ref|YP_513931.1| - 1.1 10.2 10.9 0.24 12.2 2.0 3.8 3 1 0 3 3 3 0 Histidine kinase receptor ArcB trans-membrane domain DUF5592 PF17332.2 gi|89256569|ref|YP_513931.1| - 3.1 8.4 9.3 1.2 9.7 4.1 3.0 2 0 0 2 2 2 0 Family of unknown function (DUF5592) DUF3087 PF11286.8 gi|89256569|ref|YP_513931.1| - 3.3 7.1 7.0 0.44 10.0 0.2 2.9 2 1 3 5 5 5 0 Protein of unknown function (DUF3087) DEAD PF00270.29 gi|89256570|ref|YP_513932.1| - 1e-50 171.9 3.1 6.2e-50 169.4 0.5 2.3 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|89256570|ref|YP_513932.1| - 1.6e-27 96.0 5.1 1.9e-26 92.6 0.4 2.9 3 0 0 3 3 3 1 Helicase conserved C-terminal domain AAA_19 PF13245.6 gi|89256570|ref|YP_513932.1| - 9.3e-07 29.3 0.7 0.0014 18.9 0.1 2.3 2 0 0 2 2 2 2 AAA domain ERCC3_RAD25_C PF16203.5 gi|89256570|ref|YP_513932.1| - 5.8e-05 22.4 1.8 0.00012 21.4 1.8 1.6 1 1 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase AAA_30 PF13604.6 gi|89256570|ref|YP_513932.1| - 9.6e-05 22.2 0.3 0.0058 16.4 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|89256570|ref|YP_513932.1| - 0.0017 18.6 1.4 0.036 14.3 0.2 3.0 3 1 0 3 3 3 1 AAA domain MerR-DNA-bind PF09278.11 gi|89256570|ref|YP_513932.1| - 0.0097 16.4 0.1 0.039 14.5 0.1 2.0 1 0 0 1 1 1 1 MerR, DNA binding Flavi_DEAD PF07652.14 gi|89256570|ref|YP_513932.1| - 0.013 15.4 0.1 0.045 13.7 0.0 2.0 2 0 0 2 2 2 0 Flavivirus DEAD domain RELT PF12606.8 gi|89256570|ref|YP_513932.1| - 0.097 11.7 0.0 0.19 10.7 0.0 1.4 1 0 0 1 1 1 0 Tumour necrosis factor receptor superfamily member 19 GTP_cyclohydroI PF01227.22 gi|89256571|ref|YP_513933.1| - 1.5e-47 161.3 0.0 1.9e-47 161.0 0.0 1.1 1 0 0 1 1 1 1 GTP cyclohydrolase I Aldo_ket_red PF00248.21 gi|89256572|ref|YP_513934.1| - 7.7e-63 212.4 0.2 8.7e-63 212.2 0.2 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family GATase PF00117.28 gi|89256573|ref|YP_513935.1| - 3.5e-44 150.9 0.1 3.9e-44 150.7 0.1 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|89256573|ref|YP_513935.1| - 1.2e-10 41.6 0.7 2.8e-10 40.3 0.7 1.6 1 1 0 1 1 1 1 Peptidase C26 Chorismate_bind PF00425.18 gi|89256574|ref|YP_513936.1| - 1.1e-81 274.2 0.0 1.6e-81 273.7 0.0 1.2 1 0 0 1 1 1 1 chorismate binding enzyme Aminotran_4 PF01063.19 gi|89256574|ref|YP_513936.1| - 1.1e-30 107.2 0.2 2.3e-30 106.1 0.2 1.5 1 0 0 1 1 1 1 Amino-transferase class IV Ribosomal_S17 PF00366.20 gi|89256574|ref|YP_513936.1| - 0.14 12.3 0.3 0.58 10.3 0.3 2.1 1 0 0 1 1 1 0 Ribosomal protein S17 AMP-binding PF00501.28 gi|89256575|ref|YP_513937.1| - 4.1e-24 85.0 0.0 4.8e-22 78.1 0.0 2.8 1 1 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|89256575|ref|YP_513937.1| - 2.1e-10 41.4 0.0 4.3e-10 40.4 0.0 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain FolB PF02152.18 gi|89256576|ref|YP_513938.1| - 5.7e-16 59.1 0.0 6.1e-16 59.0 0.0 1.0 1 0 0 1 1 1 1 Dihydroneopterin aldolase Pterin_bind PF00809.22 gi|89256577|ref|YP_513939.1| - 3.6e-43 148.0 0.1 4.4e-43 147.7 0.1 1.1 1 0 0 1 1 1 1 Pterin binding enzyme HPPK PF01288.20 gi|89256577|ref|YP_513939.1| - 7.2e-27 94.1 0.7 3.3e-26 92.0 0.0 2.3 2 0 0 2 2 2 1 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) Abhydrolase_3 PF07859.13 gi|89256578|ref|YP_513940.1| - 2.1e-56 191.1 0.0 2.5e-56 190.9 0.0 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold Say1_Mug180 PF10340.9 gi|89256578|ref|YP_513940.1| - 2.4e-12 46.4 0.2 3e-12 46.1 0.2 1.2 1 0 0 1 1 1 1 Steryl acetyl hydrolase Peptidase_S9 PF00326.21 gi|89256578|ref|YP_513940.1| - 2.7e-07 30.3 0.1 8.5e-07 28.7 0.1 1.7 1 1 0 1 1 1 1 Prolyl oligopeptidase family COesterase PF00135.28 gi|89256578|ref|YP_513940.1| - 4.1e-07 29.2 0.0 0.0038 16.1 0.0 2.0 2 0 0 2 2 2 2 Carboxylesterase family Hydrolase_4 PF12146.8 gi|89256578|ref|YP_513940.1| - 1.8e-06 27.4 0.0 7.6e-06 25.4 0.0 1.9 1 1 0 2 2 2 1 Serine aminopeptidase, S33 PAE PF03283.13 gi|89256578|ref|YP_513940.1| - 0.043 12.9 0.0 2.8 7.0 0.0 2.2 2 0 0 2 2 2 0 Pectinacetylesterase DUF4442 PF14539.6 gi|89256579|ref|YP_513941.1| - 6.3e-10 39.3 0.0 7.6e-10 39.0 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) YiiD_C PF09500.10 gi|89256579|ref|YP_513941.1| - 0.00069 19.5 0.3 0.011 15.5 0.3 2.0 1 1 0 1 1 1 1 Putative thioesterase (yiiD_Cterm) Aminotran_3 PF00202.21 gi|89256580|ref|YP_513942.1| - 4.7e-99 331.8 0.0 5.8e-99 331.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Beta_elim_lyase PF01212.21 gi|89256580|ref|YP_513942.1| - 0.00081 18.8 0.0 0.0031 16.8 0.0 1.8 1 1 0 1 1 1 1 Beta-eliminating lyase Daxx PF03344.15 gi|89256580|ref|YP_513942.1| - 0.12 12.5 0.0 0.38 10.8 0.0 1.8 1 0 0 1 1 1 0 Daxx N-terminal Rassf1C-interacting domain BATS PF06968.13 gi|89256581|ref|YP_513943.1| - 1.2e-19 70.2 0.0 3.5e-19 68.7 0.0 1.8 2 1 0 2 2 2 1 Biotin and Thiamin Synthesis associated domain Radical_SAM PF04055.21 gi|89256581|ref|YP_513943.1| - 2e-15 57.5 0.2 2.9e-15 57.0 0.2 1.3 1 0 0 1 1 1 1 Radical SAM superfamily SPOUT_MTase PF02590.17 gi|89256581|ref|YP_513943.1| - 0.17 11.9 0.0 0.34 10.9 0.0 1.5 1 0 0 1 1 1 0 Predicted SPOUT methyltransferase Aminotran_1_2 PF00155.21 gi|89256582|ref|YP_513944.1| - 3.7e-40 138.2 0.1 4.2e-40 138.0 0.1 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|89256582|ref|YP_513944.1| - 0.0033 16.8 0.0 0.0095 15.3 0.0 1.8 2 0 0 2 2 2 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|89256582|ref|YP_513944.1| - 0.026 13.8 0.0 0.3 10.3 0.0 2.2 2 0 0 2 2 2 0 DegT/DnrJ/EryC1/StrS aminotransferase family Methyltransf_11 PF08241.12 gi|89256583|ref|YP_513945.1| - 0.00035 21.2 0.0 0.0026 18.3 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|89256583|ref|YP_513945.1| - 0.00083 19.2 0.2 0.0011 18.9 0.2 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|89256583|ref|YP_513945.1| - 0.0022 18.7 0.5 0.0064 17.2 0.2 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|89256583|ref|YP_513945.1| - 0.011 16.4 0.0 0.043 14.5 0.0 1.9 2 0 0 2 2 2 0 Methyltransferase domain AAA_26 PF13500.6 gi|89256584|ref|YP_513946.1| - 8.4e-37 126.9 0.2 9.6e-37 126.7 0.2 1.0 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|89256584|ref|YP_513946.1| - 3.3e-06 27.2 0.1 6.8e-06 26.2 0.1 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF1611 PF07755.11 gi|89256584|ref|YP_513946.1| - 5.8e-06 25.7 0.0 0.045 13.0 0.0 2.8 1 1 1 2 2 2 2 Domain of unknown function (DUF1611_C) P-loop domain MobB PF03205.14 gi|89256584|ref|YP_513946.1| - 0.035 14.0 0.5 0.17 11.8 0.1 2.1 2 1 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B VirJ PF06057.11 gi|89256584|ref|YP_513946.1| - 0.048 13.5 0.0 8.6 6.2 0.0 2.2 2 0 0 2 2 2 0 Bacterial virulence protein (VirJ) BPL_LplA_LipB PF03099.19 gi|89256585|ref|YP_513947.1| - 1.6e-11 44.2 0.0 2.5e-11 43.6 0.0 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family HTH_11 PF08279.12 gi|89256585|ref|YP_513947.1| - 1.2e-10 41.1 0.4 3.4e-10 39.7 0.4 1.8 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.6 gi|89256585|ref|YP_513947.1| - 1.3e-05 24.6 1.1 9e-05 22.0 0.1 2.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|89256585|ref|YP_513947.1| - 0.00049 19.9 0.0 0.001 18.9 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Rrf2 PF02082.20 gi|89256585|ref|YP_513947.1| - 0.00071 19.9 0.0 0.0014 18.9 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator MarR_2 PF12802.7 gi|89256585|ref|YP_513947.1| - 0.0014 18.5 0.0 0.0027 17.6 0.0 1.5 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.19 gi|89256585|ref|YP_513947.1| - 0.0015 18.7 0.0 0.046 13.9 0.0 2.4 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain Mga PF05043.13 gi|89256585|ref|YP_513947.1| - 0.0017 18.9 0.1 0.007 16.9 0.1 2.1 1 0 0 1 1 1 1 Mga helix-turn-helix domain HTH_Mga PF08280.11 gi|89256585|ref|YP_513947.1| - 0.0064 16.5 0.4 0.045 13.8 0.1 2.5 2 0 0 2 2 2 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_34 PF13601.6 gi|89256585|ref|YP_513947.1| - 0.0098 16.1 1.1 0.024 14.8 0.1 2.2 3 0 0 3 3 3 1 Winged helix DNA-binding domain HTH_20 PF12840.7 gi|89256585|ref|YP_513947.1| - 0.013 15.5 0.0 0.022 14.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain MarR PF01047.22 gi|89256585|ref|YP_513947.1| - 0.015 15.2 0.0 0.044 13.7 0.0 1.8 1 0 0 1 1 1 0 MarR family HTH_10 PF04967.12 gi|89256585|ref|YP_513947.1| - 0.033 14.0 0.0 0.09 12.6 0.0 1.7 1 0 0 1 1 1 0 HTH DNA binding domain DDRGK PF09756.9 gi|89256585|ref|YP_513947.1| - 0.047 13.3 0.3 0.11 12.1 0.3 1.6 1 0 0 1 1 1 0 DDRGK domain SOR_SNZ PF01680.17 gi|89256585|ref|YP_513947.1| - 0.047 13.5 0.0 0.1 12.4 0.0 1.5 1 0 0 1 1 1 0 SOR/SNZ family Bro-N PF02498.17 gi|89256585|ref|YP_513947.1| - 0.058 14.1 0.8 0.2 12.3 0.1 2.2 2 2 0 2 2 2 0 BRO family, N-terminal domain HTH_23 PF13384.6 gi|89256585|ref|YP_513947.1| - 0.063 13.1 0.0 0.17 11.8 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain HTH_1 PF00126.27 gi|89256585|ref|YP_513947.1| - 0.071 13.1 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_41 PF14502.6 gi|89256585|ref|YP_513947.1| - 0.094 12.4 0.0 0.21 11.3 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|89256585|ref|YP_513947.1| - 0.1 12.6 0.0 0.27 11.2 0.0 1.7 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Cro PF09048.10 gi|89256585|ref|YP_513947.1| - 0.18 11.9 1.3 0.27 11.3 0.2 1.8 2 0 0 2 2 1 0 Cro ROK PF00480.20 gi|89256586|ref|YP_513948.1| - 2.2e-38 132.4 3.3 1.1e-37 130.2 3.3 1.8 1 1 0 1 1 1 1 ROK family DUF960 PF06124.11 gi|89256586|ref|YP_513948.1| - 0.035 14.7 0.1 0.065 13.9 0.1 1.4 1 0 0 1 1 1 0 Staphylococcal protein of unknown function (DUF960) IF2_N PF04760.15 gi|89256586|ref|YP_513948.1| - 0.058 13.2 0.0 0.2 11.5 0.0 2.0 1 1 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region ATLF PF07737.11 gi|89256586|ref|YP_513948.1| - 0.085 12.1 0.4 0.15 11.3 0.4 1.3 1 0 0 1 1 1 0 Anthrax toxin lethal factor, N- and C-terminal domain MFS_1 PF07690.16 gi|89256587|ref|YP_513949.1| - 5.1e-26 91.4 43.2 5.1e-26 91.4 43.2 2.1 1 1 1 2 2 2 1 Major Facilitator Superfamily ADC PF06314.11 gi|89256588|ref|YP_513950.1| - 3.7e-56 190.3 0.0 4.1e-56 190.2 0.0 1.0 1 0 0 1 1 1 1 Acetoacetate decarboxylase (ADC) adh_short PF00106.25 gi|89256589|ref|YP_513951.1| - 4e-10 39.5 0.6 4.1e-10 39.5 0.6 1.0 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|89256589|ref|YP_513951.1| - 8.4e-08 32.1 0.6 8.8e-08 32.0 0.6 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|89256589|ref|YP_513951.1| - 0.01 15.8 1.5 0.018 14.9 1.5 1.5 1 1 0 1 1 1 0 KR domain 3HCDH_N PF02737.18 gi|89256589|ref|YP_513951.1| - 0.025 14.5 0.2 0.025 14.5 0.2 1.1 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Shikimate_DH PF01488.20 gi|89256589|ref|YP_513951.1| - 0.051 13.6 0.1 0.051 13.6 0.1 1.0 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase adh_short_C2 PF13561.6 gi|89256590|ref|YP_513952.1| - 2.7e-38 131.9 1.1 3.3e-38 131.6 1.1 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|89256590|ref|YP_513952.1| - 2.1e-36 125.2 0.7 2.7e-36 124.9 0.7 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|89256590|ref|YP_513952.1| - 4.2e-09 36.6 0.3 6.8e-09 35.9 0.3 1.3 1 0 0 1 1 1 1 KR domain GXGXG PF01493.19 gi|89256590|ref|YP_513952.1| - 0.004 16.8 0.1 0.0094 15.6 0.1 1.6 2 0 0 2 2 2 1 GXGXG motif Epimerase PF01370.21 gi|89256590|ref|YP_513952.1| - 0.0078 15.7 0.0 0.019 14.4 0.0 1.6 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family DUF1776 PF08643.10 gi|89256590|ref|YP_513952.1| - 0.012 14.9 0.1 0.016 14.6 0.1 1.1 1 0 0 1 1 1 0 Fungal family of unknown function (DUF1776) Glyco_hydro_3 PF00933.21 gi|89256591|ref|YP_513953.1| - 8.2e-84 281.7 0.0 1.4e-83 281.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain TPP_enzyme_M PF00205.22 gi|89256591|ref|YP_513953.1| - 0.038 13.7 0.0 0.095 12.4 0.0 1.6 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, central domain CheF-arch PF04283.12 gi|89256591|ref|YP_513953.1| - 0.061 13.1 0.6 0.11 12.2 0.6 1.4 1 0 0 1 1 1 0 Chemotaxis signal transduction system protein F from archaea CbiA PF01656.23 gi|89256591|ref|YP_513953.1| - 0.068 13.2 0.0 9.9 6.2 0.0 2.4 2 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain Aminotran_3 PF00202.21 gi|89256592|ref|YP_513954.1| - 7.3e-79 265.3 0.0 9.6e-79 264.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|89256592|ref|YP_513954.1| - 0.00019 20.7 0.0 0.00032 20.0 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II GSH-S_ATP PF02955.16 gi|89256593|ref|YP_513955.1| - 2e-70 235.8 0.4 2.8e-70 235.3 0.4 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain GSH-S_N PF02951.14 gi|89256593|ref|YP_513955.1| - 9e-40 135.5 0.0 2e-39 134.4 0.0 1.6 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, N-terminal domain RimK PF08443.11 gi|89256593|ref|YP_513955.1| - 4.3e-17 62.3 0.9 6.1e-17 61.8 0.9 1.2 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATPgrasp_YheCD PF14398.6 gi|89256593|ref|YP_513955.1| - 6.3e-08 32.2 0.2 1.4e-07 31.1 0.2 1.5 1 0 0 1 1 1 1 YheC/D like ATP-grasp ATP-grasp_3 PF02655.14 gi|89256593|ref|YP_513955.1| - 7.5e-07 29.3 0.1 1.6e-06 28.3 0.1 1.5 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|89256593|ref|YP_513955.1| - 0.0048 16.2 0.4 0.015 14.6 0.1 2.0 2 1 1 3 3 3 1 Sugar-transfer associated ATP-grasp DUF3235 PF11574.8 gi|89256593|ref|YP_513955.1| - 0.031 15.1 0.5 0.072 14.0 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3235) Formyl_trans_N PF00551.19 gi|89256594|ref|YP_513956.1| - 6.4e-45 153.1 0.1 8.8e-45 152.7 0.1 1.2 1 0 0 1 1 1 1 Formyl transferase Formyl_trans_C PF02911.18 gi|89256594|ref|YP_513956.1| - 2.5e-25 88.6 0.0 4.7e-25 87.7 0.0 1.5 1 0 0 1 1 1 1 Formyl transferase, C-terminal domain DUF2757 PF10955.8 gi|89256595|ref|YP_513957.1| - 0.088 13.1 0.1 0.13 12.5 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2757) ABC2_membrane_3 PF12698.7 gi|89256595|ref|YP_513957.1| - 0.14 11.3 0.0 0.17 11.0 0.0 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein UPF0020 PF01170.18 gi|89256596|ref|YP_513958.1| - 2.5e-45 154.6 0.0 8.4e-44 149.6 0.0 2.3 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 Methyltrans_SAM PF10672.9 gi|89256596|ref|YP_513958.1| - 3.7e-21 75.6 0.3 6.4e-21 74.8 0.3 1.3 1 0 0 1 1 1 1 S-adenosylmethionine-dependent methyltransferase Methyltransf_31 PF13847.6 gi|89256596|ref|YP_513958.1| - 8.3e-12 45.2 1.3 8.5e-05 22.4 0.2 3.6 3 0 0 3 3 3 2 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|89256596|ref|YP_513958.1| - 1.4e-11 44.4 0.0 3.1e-07 30.2 0.0 3.6 3 0 0 3 3 3 2 Conserved hypothetical protein 95 MTS PF05175.14 gi|89256596|ref|YP_513958.1| - 2.9e-09 36.7 0.1 0.00062 19.4 0.0 3.2 2 1 1 3 3 3 2 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|89256596|ref|YP_513958.1| - 3.5e-08 34.0 1.1 0.011 16.5 0.0 3.8 4 0 0 4 4 4 2 Methyltransferase domain Methyltransf_15 PF09445.10 gi|89256596|ref|YP_513958.1| - 4.9e-08 32.7 0.2 0.003 17.2 0.0 3.4 2 1 1 3 3 3 2 RNA cap guanine-N2 methyltransferase THUMP PF02926.17 gi|89256596|ref|YP_513958.1| - 2.4e-07 31.0 0.7 8.7e-07 29.1 0.2 2.2 2 0 0 2 2 2 1 THUMP domain Methyltransf_11 PF08241.12 gi|89256596|ref|YP_513958.1| - 5.2e-05 23.8 0.7 0.07 13.8 0.0 3.3 3 1 0 3 3 2 2 Methyltransferase domain PrmA PF06325.13 gi|89256596|ref|YP_513958.1| - 0.00076 19.0 1.4 5.2 6.4 0.0 3.6 3 0 0 3 3 3 2 Ribosomal protein L11 methyltransferase (PrmA) MT-A70 PF05063.14 gi|89256596|ref|YP_513958.1| - 0.0023 17.9 0.9 0.0057 16.6 0.0 2.1 2 0 0 2 2 2 1 MT-A70 PGM_PMM_II PF02879.16 gi|89256596|ref|YP_513958.1| - 0.063 13.9 0.0 0.4 11.3 0.0 2.3 2 0 0 2 2 2 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FA_hydroxylase PF04116.13 gi|89256597|ref|YP_513959.1| - 2.2e-16 60.4 16.9 3.3e-16 59.8 16.9 1.3 1 0 0 1 1 1 1 Fatty acid hydroxylase superfamily RseC_MucC PF04246.12 gi|89256597|ref|YP_513959.1| - 4.9 7.1 6.4 6.6 6.7 1.3 2.1 2 0 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC RVT_1 PF00078.27 gi|89256598|ref|YP_513960.1| - 5.7e-10 39.1 0.4 6.4e-10 38.9 0.4 1.1 1 0 0 1 1 1 1 Reverse transcriptase (RNA-dependent DNA polymerase) DUF3557 PF12078.8 gi|89256598|ref|YP_513960.1| - 0.0013 18.7 1.2 0.0023 17.9 1.1 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF3557) LpoB PF13036.6 gi|89256598|ref|YP_513960.1| - 0.022 14.7 1.3 0.22 11.5 1.3 2.2 1 1 0 1 1 1 0 Peptidoglycan-synthase activator LpoB CLIP_SPH_mas PF18398.1 gi|89256598|ref|YP_513960.1| - 0.076 13.4 0.1 0.13 12.7 0.1 1.3 1 0 0 1 1 1 0 Clip-domain serine protease homolog masquerade CAMSAP_CH PF11971.8 gi|89256598|ref|YP_513960.1| - 0.089 12.6 0.0 0.22 11.4 0.0 1.7 1 0 0 1 1 1 0 CAMSAP CH domain DDE_3 PF13358.6 gi|89256599|ref|YP_513961.1| - 9.9e-30 103.2 0.2 3.2e-29 101.6 0.0 1.8 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.16 gi|89256599|ref|YP_513961.1| - 0.0029 17.6 1.5 0.0084 16.2 0.6 2.3 2 1 0 2 2 2 1 Transposase HTH_29 PF13551.6 gi|89256599|ref|YP_513961.1| - 0.0033 17.4 0.0 0.008 16.2 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn helix HTH_40 PF14493.6 gi|89256599|ref|YP_513961.1| - 0.011 16.2 0.1 0.069 13.6 0.0 2.3 3 1 0 3 3 3 0 Helix-turn-helix domain HTH_28 PF13518.6 gi|89256599|ref|YP_513961.1| - 0.026 14.6 0.0 0.073 13.2 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain CENP-B_N PF04218.13 gi|89256599|ref|YP_513961.1| - 0.097 12.3 0.0 0.98 9.1 0.0 2.5 3 0 0 3 3 3 0 CENP-B N-terminal DNA-binding domain HTH_23 PF13384.6 gi|89256599|ref|YP_513961.1| - 0.12 12.2 0.0 0.34 10.8 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain rve PF00665.26 gi|89256599|ref|YP_513961.1| - 0.15 12.3 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 Integrase core domain DDE_Tnp_ISAZ013 PF07592.11 gi|89256599|ref|YP_513961.1| - 0.17 10.9 0.3 1.1 8.1 0.1 2.0 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain HI0933_like PF03486.14 gi|89256600|ref|YP_513962.1| - 2.9e-39 134.9 0.1 3.2e-39 134.8 0.1 1.0 1 0 0 1 1 1 1 HI0933-like protein FAD_binding_2 PF00890.24 gi|89256600|ref|YP_513962.1| - 0.13 11.3 0.0 0.13 11.3 0.0 1.1 1 0 0 1 1 1 0 FAD binding domain HI0933_like PF03486.14 gi|89256601|ref|YP_513963.1| - 5.9e-70 236.0 0.0 6.5e-70 235.9 0.0 1.0 1 0 0 1 1 1 1 HI0933-like protein HTH_23 PF13384.6 gi|89256602|ref|YP_513964.1| - 0.0001 22.0 0.0 0.00019 21.1 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_45 PF14947.6 gi|89256602|ref|YP_513964.1| - 0.00034 20.5 0.0 0.00069 19.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_29 PF13551.6 gi|89256602|ref|YP_513964.1| - 0.0023 17.9 0.0 0.0034 17.4 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix HTH_11 PF08279.12 gi|89256602|ref|YP_513964.1| - 0.0037 17.2 0.0 0.0093 15.9 0.0 1.7 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.6 gi|89256602|ref|YP_513964.1| - 0.0041 16.7 0.0 0.0089 15.6 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|89256602|ref|YP_513964.1| - 0.0063 16.4 0.0 0.011 15.6 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_28 PF13518.6 gi|89256602|ref|YP_513964.1| - 0.0083 16.2 0.0 0.014 15.5 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_1 PF01527.20 gi|89256602|ref|YP_513964.1| - 0.0098 16.2 0.0 0.021 15.1 0.0 1.7 1 1 0 1 1 1 1 Transposase HTH_7 PF02796.15 gi|89256602|ref|YP_513964.1| - 0.011 15.8 0.0 0.026 14.6 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_3 PF01381.22 gi|89256602|ref|YP_513964.1| - 0.013 15.5 0.0 0.029 14.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix HTH_38 PF13936.6 gi|89256602|ref|YP_513964.1| - 0.014 15.2 0.0 0.031 14.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain TrmB PF01978.19 gi|89256602|ref|YP_513964.1| - 0.014 15.2 0.0 0.023 14.6 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|89256602|ref|YP_513964.1| - 0.022 14.6 0.0 0.039 13.8 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF4423 PF14394.6 gi|89256602|ref|YP_513964.1| - 0.026 14.2 0.1 0.055 13.2 0.0 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4423) B-block_TFIIIC PF04182.12 gi|89256602|ref|YP_513964.1| - 0.038 14.2 0.6 0.069 13.3 0.0 1.7 2 0 0 2 2 2 0 B-block binding subunit of TFIIIC HTH_36 PF13730.6 gi|89256602|ref|YP_513964.1| - 0.11 12.5 0.0 0.91 9.5 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain adh_short PF00106.25 gi|89256603|ref|YP_513965.1| - 4.7e-39 133.9 0.1 6e-39 133.5 0.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|89256603|ref|YP_513965.1| - 7.5e-28 97.7 0.0 9.5e-28 97.3 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|89256603|ref|YP_513965.1| - 4.2e-09 36.6 0.1 5.6e-09 36.2 0.1 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|89256603|ref|YP_513965.1| - 4.2e-05 23.1 1.1 0.00013 21.6 1.1 1.8 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family DUF1776 PF08643.10 gi|89256603|ref|YP_513965.1| - 0.0012 18.3 0.1 0.0034 16.8 0.1 1.6 2 0 0 2 2 2 1 Fungal family of unknown function (DUF1776) ADH_zinc_N PF00107.26 gi|89256603|ref|YP_513965.1| - 0.0047 16.9 0.1 0.0074 16.3 0.1 1.4 1 1 0 1 1 1 1 Zinc-binding dehydrogenase PAE PF03283.13 gi|89256603|ref|YP_513965.1| - 0.005 16.0 0.1 0.0073 15.5 0.1 1.3 1 0 0 1 1 1 1 Pectinacetylesterase ApbA PF02558.16 gi|89256603|ref|YP_513965.1| - 0.012 15.3 0.1 0.017 14.8 0.1 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA TrkA_N PF02254.18 gi|89256603|ref|YP_513965.1| - 0.013 15.8 0.0 0.031 14.5 0.0 1.7 1 0 0 1 1 1 0 TrkA-N domain NmrA PF05368.13 gi|89256603|ref|YP_513965.1| - 0.058 12.9 0.1 0.13 11.8 0.0 1.5 2 0 0 2 2 2 0 NmrA-like family 2-Hacid_dh_C PF02826.19 gi|89256603|ref|YP_513965.1| - 0.12 11.8 0.0 0.22 10.9 0.0 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YjeF_N PF03853.15 gi|89256603|ref|YP_513965.1| - 0.17 11.8 0.3 0.44 10.4 0.1 1.8 2 0 0 2 2 2 0 YjeF-related protein N-terminus AA_permease_2 PF13520.6 gi|89256604|ref|YP_513966.1| - 4.1e-23 81.9 23.9 4.9e-23 81.6 23.9 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|89256604|ref|YP_513966.1| - 1.3e-13 50.4 21.2 1.9e-13 49.8 21.2 1.3 1 1 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.6 gi|89256605|ref|YP_513967.1| - 2.6e-21 75.9 18.4 2.9e-21 75.8 18.4 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|89256605|ref|YP_513967.1| - 1.5e-09 37.0 13.2 1.8e-09 36.7 13.2 1.1 1 0 0 1 1 1 1 Amino acid permease COX7C PF02935.16 gi|89256605|ref|YP_513967.1| - 2.5 8.4 9.8 0.36 11.1 2.6 2.7 2 0 0 2 2 2 0 Cytochrome c oxidase subunit VIIc DDE_3 PF13358.6 gi|89256607|ref|YP_513969.1| - 9.9e-30 103.2 0.2 3.2e-29 101.6 0.0 1.8 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.16 gi|89256607|ref|YP_513969.1| - 0.0029 17.6 1.5 0.0084 16.2 0.6 2.3 2 1 0 2 2 2 1 Transposase HTH_29 PF13551.6 gi|89256607|ref|YP_513969.1| - 0.0033 17.4 0.0 0.008 16.2 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn helix HTH_40 PF14493.6 gi|89256607|ref|YP_513969.1| - 0.011 16.2 0.1 0.069 13.6 0.0 2.3 3 1 0 3 3 3 0 Helix-turn-helix domain HTH_28 PF13518.6 gi|89256607|ref|YP_513969.1| - 0.026 14.6 0.0 0.073 13.2 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain CENP-B_N PF04218.13 gi|89256607|ref|YP_513969.1| - 0.097 12.3 0.0 0.98 9.1 0.0 2.5 3 0 0 3 3 3 0 CENP-B N-terminal DNA-binding domain HTH_23 PF13384.6 gi|89256607|ref|YP_513969.1| - 0.12 12.2 0.0 0.34 10.8 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain rve PF00665.26 gi|89256607|ref|YP_513969.1| - 0.15 12.3 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 Integrase core domain DDE_Tnp_ISAZ013 PF07592.11 gi|89256607|ref|YP_513969.1| - 0.17 10.9 0.3 1.1 8.1 0.1 2.0 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain DUF4440 PF14534.6 gi|89256608|ref|YP_513970.1| - 1.2e-06 28.8 0.0 2.2e-06 28.0 0.0 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF4440) SnoaL_2 PF12680.7 gi|89256608|ref|YP_513970.1| - 0.00013 22.6 0.0 0.0002 22.0 0.0 1.3 1 0 0 1 1 1 1 SnoaL-like domain DUF1348 PF07080.11 gi|89256608|ref|YP_513970.1| - 0.0017 18.3 0.4 0.056 13.4 0.1 2.1 1 1 1 2 2 2 1 Protein of unknown function (DUF1348) SnoaL PF07366.12 gi|89256608|ref|YP_513970.1| - 0.043 13.6 0.0 0.059 13.2 0.0 1.2 1 0 0 1 1 1 0 SnoaL-like polyketide cyclase SnoaL_3 PF13474.6 gi|89256608|ref|YP_513970.1| - 0.085 13.1 0.0 0.13 12.6 0.0 1.3 1 0 0 1 1 1 0 SnoaL-like domain Inhibitor_I42 PF09394.10 gi|89256609|ref|YP_513971.1| - 0.0044 17.4 0.0 0.0063 16.9 0.0 1.2 1 0 0 1 1 1 1 Chagasin family peptidase inhibitor I42 DDE_Tnp_1_2 PF13586.6 gi|89256610|ref|YP_513972.1| - 1.1e-13 51.4 0.0 1.9e-13 50.6 0.0 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|89256610|ref|YP_513972.1| - 4.5e-12 46.1 2.0 4.1e-11 42.9 2.0 2.0 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 gi|89256610|ref|YP_513972.1| - 7.2e-08 32.6 0.0 1e-07 32.1 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.6 gi|89256610|ref|YP_513972.1| - 0.00018 21.2 0.2 0.00025 20.8 0.2 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease DUF4096 PF13340.6 gi|89256610|ref|YP_513972.1| - 0.0058 16.8 0.0 0.012 15.9 0.0 1.5 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) NAD_binding_1 PF00175.21 gi|89256611|ref|YP_513973.1| - 6.7e-15 55.7 0.0 1e-14 55.1 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain FAD_binding_6 PF00970.24 gi|89256611|ref|YP_513973.1| - 7.4e-10 39.1 0.0 1.6e-09 38.0 0.0 1.5 2 0 0 2 2 2 1 Oxidoreductase FAD-binding domain Ribosomal_L31 PF01197.18 gi|161353780|ref|YP_513974.2| - 7.8e-35 118.9 1.4 9.1e-35 118.7 1.4 1.1 1 0 0 1 1 1 1 Ribosomal protein L31 Glu_cys_ligase PF04262.14 gi|89256613|ref|YP_513975.1| - 2.6e-126 421.2 0.2 3.5e-126 420.8 0.2 1.1 1 0 0 1 1 1 1 Glutamate-cysteine ligase MurJ PF03023.14 gi|89256614|ref|YP_513976.1| - 3.5e-67 227.0 59.4 4.9e-67 226.5 59.4 1.2 1 0 0 1 1 1 1 Lipid II flippase MurJ Sel1 PF08238.12 gi|89256615|ref|YP_513977.1| - 1.9e-15 56.9 7.2 1.8e-05 25.2 0.1 5.0 4 0 0 4 4 4 3 Sel1 repeat TPR_14 PF13428.6 gi|89256615|ref|YP_513977.1| - 0.18 12.7 5.6 1.7 9.7 0.1 3.8 4 1 1 5 5 5 0 Tetratricopeptide repeat TPR_2 PF07719.17 gi|89256615|ref|YP_513977.1| - 0.2 11.8 16.5 0.43 10.8 1.8 5.5 6 0 0 6 6 6 0 Tetratricopeptide repeat DUF627 PF04781.12 gi|89256615|ref|YP_513977.1| - 0.37 10.8 2.0 4.2 7.4 0.2 2.8 2 1 0 2 2 2 0 Protein of unknown function (DUF627) TPR_1 PF00515.28 gi|89256615|ref|YP_513977.1| - 0.92 9.4 18.9 0.67 9.9 0.3 5.7 7 0 0 7 7 7 0 Tetratricopeptide repeat TsaE PF02367.17 gi|89256616|ref|YP_513978.1| - 1.7e-39 134.6 0.0 1.9e-39 134.5 0.0 1.0 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE ABC_tran PF00005.27 gi|89256616|ref|YP_513978.1| - 0.0012 19.4 0.0 0.0012 19.4 0.0 1.3 1 1 0 1 1 1 1 ABC transporter AAA_22 PF13401.6 gi|89256616|ref|YP_513978.1| - 0.0024 18.1 0.1 0.047 14.0 0.1 2.1 1 1 1 2 2 2 1 AAA domain ATPase_2 PF01637.18 gi|89256616|ref|YP_513978.1| - 0.005 16.8 0.0 0.0061 16.5 0.0 1.1 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea RNA_helicase PF00910.22 gi|89256616|ref|YP_513978.1| - 0.008 16.6 0.0 0.012 16.0 0.0 1.3 1 0 0 1 1 1 1 RNA helicase AAA_33 PF13671.6 gi|89256616|ref|YP_513978.1| - 0.014 15.5 0.0 0.016 15.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|89256616|ref|YP_513978.1| - 0.015 15.7 0.0 0.018 15.5 0.0 1.2 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|89256616|ref|YP_513978.1| - 0.048 14.0 0.0 0.055 13.8 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain AAA_23 PF13476.6 gi|89256616|ref|YP_513978.1| - 0.055 14.0 0.0 0.057 13.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|89256616|ref|YP_513978.1| - 0.062 13.2 0.0 0.082 12.8 0.0 1.2 1 0 0 1 1 1 0 NACHT domain AFG1_ATPase PF03969.16 gi|89256616|ref|YP_513978.1| - 0.12 11.2 0.0 0.12 11.2 0.0 1.1 1 0 0 1 1 1 0 AFG1-like ATPase AAA_24 PF13479.6 gi|89256616|ref|YP_513978.1| - 0.13 12.0 0.0 0.13 12.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|89256616|ref|YP_513978.1| - 0.13 11.5 0.0 0.21 10.8 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_PrkA PF08298.11 gi|89256616|ref|YP_513978.1| - 0.15 11.0 0.1 0.38 9.6 0.1 1.6 1 1 1 2 2 2 0 PrkA AAA domain DUF815 PF05673.13 gi|89256616|ref|YP_513978.1| - 0.16 11.1 0.0 0.2 10.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF815) cobW PF02492.19 gi|89256616|ref|YP_513978.1| - 0.2 11.2 0.2 0.27 10.8 0.2 1.2 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Mur_ligase_M PF08245.12 gi|89256617|ref|YP_513979.1| - 2.2e-08 34.3 0.0 1.5e-07 31.6 0.0 2.1 1 1 0 1 1 1 1 Mur ligase middle domain Mur_ligase_C PF02875.21 gi|89256617|ref|YP_513979.1| - 0.012 15.8 0.0 0.033 14.4 0.0 1.7 1 0 0 1 1 1 0 Mur ligase family, glutamate ligase domain Phage_terminase PF10668.9 gi|89256617|ref|YP_513979.1| - 0.046 13.7 0.1 0.087 12.9 0.1 1.4 1 0 0 1 1 1 0 Phage terminase small subunit Carboxyl_trans PF01039.22 gi|89256618|ref|YP_513980.1| - 3.4e-18 65.6 0.0 4.3e-18 65.2 0.0 1.2 1 0 0 1 1 1 1 Carboxyl transferase domain zf-ACC PF17848.1 gi|89256618|ref|YP_513980.1| - 5.1e-10 39.2 4.3 8.2e-10 38.6 4.3 1.4 1 0 0 1 1 1 1 Acetyl-coA carboxylase zinc finger domain OrfB_Zn_ribbon PF07282.11 gi|89256618|ref|YP_513980.1| - 0.0084 16.0 1.1 0.018 15.0 1.1 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Auto_anti-p27 PF06677.12 gi|89256618|ref|YP_513980.1| - 0.0088 16.2 0.9 0.018 15.2 0.9 1.5 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zinc_ribbon_4 PF13717.6 gi|89256618|ref|YP_513980.1| - 0.027 14.4 2.4 1.9 8.4 0.4 2.4 2 0 0 2 2 2 0 zinc-ribbon domain IBR PF01485.21 gi|89256618|ref|YP_513980.1| - 0.031 14.5 0.5 0.057 13.7 0.5 1.3 1 0 0 1 1 1 0 IBR domain, a half RING-finger domain TF_Zn_Ribbon PF08271.12 gi|89256618|ref|YP_513980.1| - 0.034 13.7 3.1 0.061 12.8 3.1 1.4 1 0 0 1 1 1 0 TFIIB zinc-binding DZR PF12773.7 gi|89256618|ref|YP_513980.1| - 0.043 13.9 0.5 0.077 13.0 0.5 1.3 1 0 0 1 1 1 0 Double zinc ribbon FYDLN_acid PF09538.10 gi|89256618|ref|YP_513980.1| - 0.13 13.0 0.1 0.27 11.9 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (FYDLN_acid) Zn_Tnp_IS1595 PF12760.7 gi|89256618|ref|YP_513980.1| - 0.32 11.0 4.6 2.6 8.1 0.4 2.3 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-Mss51 PF13824.6 gi|89256618|ref|YP_513980.1| - 0.36 11.0 2.2 0.45 10.6 0.2 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 RNA_POL_M_15KD PF02150.16 gi|89256618|ref|YP_513980.1| - 0.39 10.6 2.6 0.71 9.8 2.6 1.4 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit Molybdop_Fe4S4 PF04879.16 gi|89256618|ref|YP_513980.1| - 1.2 9.2 4.3 2.2 8.4 0.6 2.3 2 0 0 2 2 2 0 Molybdopterin oxidoreductase Fe4S4 domain NDK PF00334.19 gi|89256619|ref|YP_513981.1| - 5.6e-56 188.3 0.2 6.2e-56 188.1 0.2 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase CTP_synth_N PF06418.14 gi|89256620|ref|YP_513982.1| - 1.7e-123 411.1 0.3 2.4e-123 410.6 0.3 1.2 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.28 gi|89256620|ref|YP_513982.1| - 2.6e-54 183.9 0.0 4.6e-54 183.1 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|89256620|ref|YP_513982.1| - 4.7e-05 23.3 3.5 0.00031 20.6 1.1 2.7 2 1 0 2 2 2 1 Peptidase C26 CbiA PF01656.23 gi|89256620|ref|YP_513982.1| - 0.0001 22.4 0.0 0.00016 21.7 0.0 1.8 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DcuC PF03606.15 gi|89256621|ref|YP_513983.1| - 6.9e-54 183.0 11.9 8.4e-54 182.8 11.9 1.0 1 0 0 1 1 1 1 C4-dicarboxylate anaerobic carrier DctM PF06808.12 gi|89256621|ref|YP_513983.1| - 0.07 11.9 13.2 0.11 11.3 13.2 1.3 1 0 0 1 1 1 0 Tripartite ATP-independent periplasmic transporter, DctM component CitMHS PF03600.16 gi|89256621|ref|YP_513983.1| - 5 6.2 22.2 1.5 8.0 18.9 1.5 1 1 0 1 1 1 0 Citrate transporter DcuC PF03606.15 gi|89256622|ref|YP_513984.1| - 4.2e-54 183.8 10.5 4.8e-54 183.5 10.5 1.0 1 0 0 1 1 1 1 C4-dicarboxylate anaerobic carrier SCFA_trans PF02667.14 gi|89256622|ref|YP_513984.1| - 8e-09 35.0 14.9 9.1e-09 34.8 14.9 1.0 1 0 0 1 1 1 1 Short chain fatty acid transporter ABG_transport PF03806.13 gi|89256622|ref|YP_513984.1| - 0.00065 18.1 6.2 0.00065 18.1 6.2 1.8 1 1 0 1 1 1 1 AbgT putative transporter family CAAD PF14159.6 gi|89256622|ref|YP_513984.1| - 1.2 9.0 7.3 0.35 10.7 0.5 2.8 3 0 0 3 3 3 0 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase DDE_3 PF13358.6 gi|89256625|ref|YP_513987.1| - 2.3e-30 105.3 0.1 7.9e-30 103.5 0.0 1.8 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.16 gi|89256625|ref|YP_513987.1| - 0.0029 17.6 1.5 0.0084 16.2 0.6 2.3 2 1 0 2 2 2 1 Transposase HTH_29 PF13551.6 gi|89256625|ref|YP_513987.1| - 0.0033 17.4 0.0 0.008 16.2 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn helix HTH_40 PF14493.6 gi|89256625|ref|YP_513987.1| - 0.0099 16.3 0.1 0.069 13.6 0.0 2.3 3 1 0 3 3 3 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|89256625|ref|YP_513987.1| - 0.026 14.6 0.0 0.073 13.2 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|89256625|ref|YP_513987.1| - 0.12 12.2 0.0 0.34 10.8 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain rve PF00665.26 gi|89256625|ref|YP_513987.1| - 0.15 12.3 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 Integrase core domain DDE_Tnp_ISAZ013 PF07592.11 gi|89256625|ref|YP_513987.1| - 0.17 10.9 0.3 1.1 8.1 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain Gly_transf_sug PF04488.15 gi|89256626|ref|YP_513988.1| - 2.1e-09 37.9 4.4 5.6e-09 36.5 0.4 3.0 2 1 0 3 3 3 1 Glycosyltransferase sugar-binding region containing DXD motif TcdA_TcdB PF12919.7 gi|89256626|ref|YP_513988.1| - 1.4e-06 27.8 7.4 3.1e-06 26.8 0.2 2.5 1 1 0 2 2 2 2 TcdA/TcdB catalytic glycosyltransferase domain DUF2508 PF10704.9 gi|89256626|ref|YP_513988.1| - 0.012 15.8 0.4 0.026 14.7 0.4 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2508) DDE_Tnp_1_2 PF13586.6 gi|89256627|ref|YP_513989.1| - 7.1e-14 51.9 0.0 1.1e-13 51.3 0.0 1.3 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|89256627|ref|YP_513989.1| - 2e-12 47.2 2.2 2.1e-11 43.9 2.2 1.9 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 gi|89256627|ref|YP_513989.1| - 4.4e-08 33.3 0.0 5.5e-08 33.0 0.0 1.1 1 0 0 1 1 1 1 Transposase DDE domain MutL PF13941.6 gi|89256627|ref|YP_513989.1| - 0.14 10.7 0.0 0.14 10.7 0.0 1.1 1 0 0 1 1 1 0 MutL protein Cas_Cas4 PF01930.17 gi|89256628|ref|YP_513990.1| - 1.9e-12 47.6 0.3 2.5e-12 47.2 0.3 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.7 gi|89256628|ref|YP_513990.1| - 2.4e-11 44.1 0.1 3.1e-10 40.4 0.1 1.8 1 1 1 2 2 2 2 PD-(D/E)XK nuclease superfamily CRISPR_Cas2 PF09827.9 gi|89256629|ref|YP_513991.1| - 7.2e-12 45.3 0.6 9.2e-12 45.0 0.6 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas2 DUF4649 PF15507.6 gi|89256629|ref|YP_513991.1| - 0.0099 15.8 0.0 0.015 15.2 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4649) PROCT PF08084.11 gi|89256631|ref|YP_513993.1| - 0.043 13.7 1.7 0.07 13.1 0.2 2.1 2 0 0 2 2 2 0 PROCT (NUC072) domain Phage_pRha PF09669.10 gi|89256631|ref|YP_513993.1| - 0.11 13.0 7.2 8.5 7.0 0.1 4.0 2 2 2 4 4 4 0 Phage regulatory protein Rha (Phage_pRha) OmpA PF00691.20 gi|89256632|ref|YP_513994.1| - 2.7e-16 59.7 0.3 5.2e-16 58.8 0.3 1.5 1 0 0 1 1 1 1 OmpA family Fer4 PF00037.27 gi|89256633|ref|YP_513995.1| - 7.1e-08 32.0 20.2 4.6e-06 26.2 4.2 3.2 3 0 0 3 3 3 3 4Fe-4S binding domain Fer4_2 PF12797.7 gi|89256633|ref|YP_513995.1| - 1.6e-06 27.8 11.9 0.00075 19.5 1.7 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|89256633|ref|YP_513995.1| - 2.5e-06 28.0 13.0 7.6e-06 26.4 13.4 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|89256633|ref|YP_513995.1| - 3.2e-05 24.0 13.9 8.7e-05 22.6 14.4 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|89256633|ref|YP_513995.1| - 0.00036 20.6 15.1 0.0005 20.1 13.7 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|89256633|ref|YP_513995.1| - 0.00095 20.1 16.2 0.0033 18.3 7.3 2.1 1 1 1 2 2 2 1 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|89256633|ref|YP_513995.1| - 0.0016 18.5 17.3 0.0041 17.2 17.3 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|89256633|ref|YP_513995.1| - 0.0059 16.6 20.1 0.22 11.7 6.1 2.7 2 1 0 2 2 2 2 4Fe-4S binding domain GF_recep_IV PF14843.6 gi|89256633|ref|YP_513995.1| - 0.0059 16.4 8.7 0.0072 16.1 8.7 1.2 1 0 0 1 1 1 1 Growth factor receptor domain IV Fer4_4 PF12800.7 gi|89256633|ref|YP_513995.1| - 0.11 13.1 2.7 0.11 13.1 2.7 2.8 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_17 PF13534.6 gi|89256633|ref|YP_513995.1| - 0.48 11.0 16.7 0.19 12.3 4.4 2.5 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|89256633|ref|YP_513995.1| - 0.63 11.1 17.5 2.8 9.1 6.3 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|89256633|ref|YP_513995.1| - 2.7 8.5 16.2 0.46 11.0 3.3 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain CTP_transf_like PF01467.26 gi|89256634|ref|YP_513996.1| - 1.3e-18 67.5 0.0 1.6e-18 67.2 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase-like Citrate_ly_lig PF08218.11 gi|89256634|ref|YP_513996.1| - 9.8e-06 25.4 0.2 0.0027 17.4 0.1 2.0 2 0 0 2 2 2 2 Citrate lyase ligase C-terminal domain Pox_D2 PF04701.13 gi|89256634|ref|YP_513996.1| - 0.039 14.1 0.8 7.6 6.7 0.1 2.1 2 0 0 2 2 2 0 Pox virus D2 protein FeS_assembly_P PF01883.19 gi|89256635|ref|YP_513997.1| - 5.7e-14 52.0 0.1 1.2e-13 51.0 0.1 1.5 1 0 0 1 1 1 1 Iron-sulfur cluster assembly protein Fe-S_biosyn PF01521.20 gi|89256636|ref|YP_513998.1| - 6.4e-17 61.8 0.1 7.2e-17 61.6 0.1 1.0 1 0 0 1 1 1 1 Iron-sulphur cluster biosynthesis Glyco_transf_90 PF05686.12 gi|89256636|ref|YP_513998.1| - 0.024 13.5 0.0 0.027 13.4 0.0 1.0 1 0 0 1 1 1 0 Glycosyl transferase family 90 Aminotran_5 PF00266.19 gi|89256637|ref|YP_513999.1| - 1.9e-137 458.2 0.2 2.2e-137 458.0 0.2 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|89256637|ref|YP_513999.1| - 8.2e-08 31.8 0.2 9.3e-08 31.6 0.2 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Met_gamma_lyase PF06838.11 gi|89256637|ref|YP_513999.1| - 2.2e-05 23.2 0.1 3.5e-05 22.5 0.1 1.2 1 0 0 1 1 1 1 Methionine gamma-lyase Imm48 PF15574.6 gi|89256637|ref|YP_513999.1| - 0.0013 18.5 0.2 0.0026 17.5 0.2 1.5 1 0 0 1 1 1 1 Immunity protein 48 SelA PF03841.13 gi|89256637|ref|YP_513999.1| - 0.027 13.5 0.2 0.074 12.0 0.0 1.8 2 0 0 2 2 2 0 L-seryl-tRNA selenium transferase B12-binding PF02310.19 gi|89256637|ref|YP_513999.1| - 0.052 13.6 0.1 0.15 12.1 0.0 1.8 2 0 0 2 2 2 0 B12 binding domain PK_C PF02887.16 gi|89256637|ref|YP_513999.1| - 0.092 13.0 0.5 0.33 11.2 0.5 2.0 1 1 0 1 1 1 0 Pyruvate kinase, alpha/beta domain SDH_alpha PF03313.15 gi|89256638|ref|YP_514000.1| - 6.3e-92 307.9 5.8 7.6e-92 307.6 5.8 1.1 1 0 0 1 1 1 1 Serine dehydratase alpha chain SDH_beta PF03315.15 gi|89256638|ref|YP_514000.1| - 2.7e-54 183.7 0.0 5.1e-54 182.9 0.0 1.5 1 0 0 1 1 1 1 Serine dehydratase beta chain DUF45 PF01863.17 gi|89256639|ref|YP_514001.1| - 8.1e-51 173.0 5.5 9.2e-51 172.8 5.5 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF45 WLM PF08325.10 gi|89256639|ref|YP_514001.1| - 1.5e-06 28.4 0.8 0.00029 21.0 0.2 2.2 2 0 0 2 2 2 2 WLM domain SprT-like PF10263.9 gi|89256639|ref|YP_514001.1| - 0.0012 18.7 0.8 0.0057 16.5 0.4 2.0 1 1 1 2 2 2 1 SprT-like family Hen1_L PF12623.7 gi|89256639|ref|YP_514001.1| - 0.027 13.5 0.1 0.59 9.1 0.0 2.1 2 0 0 2 2 2 0 RNA repair, ligase-Pnkp-associating, region of Hen1 PDT PF00800.18 gi|89256640|ref|YP_514002.1| - 1.3e-53 181.5 0.1 1.7e-53 181.1 0.1 1.2 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.25 gi|89256640|ref|YP_514002.1| - 7e-08 32.1 0.0 1.4e-07 31.2 0.0 1.5 1 0 0 1 1 1 1 ACT domain Eryth_link_C PF16915.5 gi|89256640|ref|YP_514002.1| - 0.072 13.1 0.2 0.2 11.7 0.0 1.8 2 0 0 2 2 2 0 Annelid erythrocruorin linker subunit C-terminus ACT_4 PF13291.6 gi|89256640|ref|YP_514002.1| - 0.1 13.2 0.0 0.24 12.0 0.0 1.7 1 0 0 1 1 1 0 ACT domain Ala_racemase_N PF01168.20 gi|89256641|ref|YP_514003.1| - 4e-49 167.2 0.0 5e-49 166.9 0.0 1.1 1 0 0 1 1 1 1 Alanine racemase, N-terminal domain Ala_racemase_C PF00842.21 gi|89256641|ref|YP_514003.1| - 1.5e-27 95.8 0.1 3e-27 94.9 0.1 1.5 1 0 0 1 1 1 1 Alanine racemase, C-terminal domain Orn_Arg_deC_N PF02784.16 gi|89256641|ref|YP_514003.1| - 0.0051 16.2 0.1 0.0079 15.6 0.1 1.3 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain PTR2 PF00854.21 gi|89256642|ref|YP_514004.1| - 7e-30 104.1 28.0 1.1e-29 103.5 28.0 1.2 1 0 0 1 1 1 1 POT family MFS_1 PF07690.16 gi|89256642|ref|YP_514004.1| - 5e-16 58.6 54.2 4.3e-09 35.8 33.3 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily GST_N_4 PF17172.4 gi|89256643|ref|YP_514005.1| - 4.4e-28 97.9 0.3 9.9e-28 96.8 0.2 1.6 2 0 0 2 2 2 1 Glutathione S-transferase N-terminal domain Tom37 PF10568.9 gi|89256643|ref|YP_514005.1| - 1.1e-15 58.0 1.1 1.7e-15 57.4 0.6 1.6 2 0 0 2 2 2 1 Outer mitochondrial membrane transport complex protein GST_C_6 PF17171.4 gi|89256643|ref|YP_514005.1| - 6.1e-10 38.8 0.1 1.5e-09 37.5 0.1 1.7 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_N_3 PF13417.6 gi|89256643|ref|YP_514005.1| - 2.3e-06 27.9 0.0 7.7e-06 26.2 0.0 1.9 2 0 0 2 2 2 1 Glutathione S-transferase, N-terminal domain GST_C_2 PF13410.6 gi|89256643|ref|YP_514005.1| - 0.00047 20.1 0.0 0.00088 19.2 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C_3 PF14497.6 gi|89256643|ref|YP_514005.1| - 0.0017 18.5 0.2 0.0057 16.8 0.1 1.9 1 1 1 2 2 2 1 Glutathione S-transferase, C-terminal domain Glutaredoxin2_C PF04399.13 gi|89256643|ref|YP_514005.1| - 0.041 13.7 0.0 0.088 12.6 0.0 1.6 1 0 0 1 1 1 0 Glutaredoxin 2, C terminal domain DUF3301 PF11743.8 gi|89256644|ref|YP_514006.1| - 1.1e-22 79.5 0.1 1.4e-22 79.2 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3301) DUF475 PF04332.15 gi|89256645|ref|YP_514007.1| - 6.6e-94 315.0 16.9 6.6e-94 315.0 16.9 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF475) TerC PF03741.16 gi|89256645|ref|YP_514007.1| - 3.6e-16 59.4 17.3 1.5e-14 54.1 17.3 2.4 1 1 0 1 1 1 1 Integral membrane protein TerC family HAD PF12710.7 gi|89256647|ref|YP_514009.1| - 2.3e-09 37.9 0.0 2.7e-09 37.7 0.0 1.0 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|89256647|ref|YP_514009.1| - 1.3e-06 28.6 0.1 1.6e-06 28.3 0.1 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|89256647|ref|YP_514009.1| - 4.5e-05 23.8 0.0 0.0021 18.4 0.0 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase UMPH-1 PF05822.12 gi|89256647|ref|YP_514009.1| - 0.0035 16.9 0.0 0.0056 16.2 0.0 1.3 1 1 0 1 1 1 1 Pyrimidine 5'-nucleotidase (UMPH-1) Put_Phosphatase PF06888.12 gi|89256647|ref|YP_514009.1| - 0.0087 15.5 0.0 0.012 15.0 0.0 1.2 1 0 0 1 1 1 1 Putative Phosphatase PNK3P PF08645.11 gi|89256647|ref|YP_514009.1| - 0.046 13.4 0.0 2.6 7.7 0.0 2.1 2 0 0 2 2 2 0 Polynucleotide kinase 3 phosphatase DDE_Tnp_1_2 PF13586.6 gi|89256649|ref|YP_514011.1| - 1.7e-13 50.7 0.0 3.2e-13 49.9 0.0 1.5 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|89256649|ref|YP_514011.1| - 9.7e-12 45.0 1.9 7.6e-11 42.1 1.9 1.9 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 gi|89256649|ref|YP_514011.1| - 1.3e-07 31.8 0.0 1.9e-07 31.3 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF4096 PF13340.6 gi|89256649|ref|YP_514011.1| - 0.0087 16.3 0.0 0.016 15.4 0.0 1.5 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) DDE_3 PF13358.6 gi|89256650|ref|YP_514012.1| - 8.4e-29 100.2 0.1 3e-28 98.4 0.0 1.8 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_29 PF13551.6 gi|89256650|ref|YP_514012.1| - 0.003 17.6 0.0 0.0073 16.3 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn helix HTH_Tnp_IS630 PF01710.16 gi|89256650|ref|YP_514012.1| - 0.0033 17.5 1.8 0.0082 16.2 0.8 2.2 2 1 0 2 2 2 1 Transposase HTH_40 PF14493.6 gi|89256650|ref|YP_514012.1| - 0.015 15.8 0.0 0.061 13.8 0.0 2.0 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_28 PF13518.6 gi|89256650|ref|YP_514012.1| - 0.023 14.8 0.0 0.066 13.3 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain CENP-B_N PF04218.13 gi|89256650|ref|YP_514012.1| - 0.082 12.6 0.0 0.9 9.2 0.0 2.5 3 0 0 3 3 3 0 CENP-B N-terminal DNA-binding domain HTH_23 PF13384.6 gi|89256650|ref|YP_514012.1| - 0.1 12.4 0.0 0.31 10.9 0.0 1.9 1 0 0 1 1 1 0 Homeodomain-like domain rve PF00665.26 gi|89256650|ref|YP_514012.1| - 0.14 12.4 0.0 0.24 11.6 0.0 1.4 1 0 0 1 1 1 0 Integrase core domain tRNA_synt_2f PF02092.17 gi|89256651|ref|YP_514013.1| - 2.7e-205 683.4 0.8 4.4e-205 682.6 0.8 1.3 1 0 0 1 1 1 1 Glycyl-tRNA synthetase beta subunit DALR_1 PF05746.15 gi|89256651|ref|YP_514013.1| - 2e-06 27.9 4.8 3e-06 27.4 2.9 2.3 2 0 0 2 2 2 1 DALR anticodon binding domain HHH_6 PF14579.6 gi|89256651|ref|YP_514013.1| - 0.0086 16.3 0.5 0.27 11.5 0.0 2.9 3 0 0 3 3 3 1 Helix-hairpin-helix motif TatD_DNase PF01026.21 gi|89256652|ref|YP_514014.1| - 3.7e-42 144.5 0.6 1.8e-27 96.4 0.1 2.0 1 1 1 2 2 2 2 TatD related DNase TBP-binding PF09247.11 gi|89256652|ref|YP_514014.1| - 0.01 16.0 0.0 0.029 14.6 0.0 1.8 1 0 0 1 1 1 0 TATA box-binding protein binding SMC_N PF02463.19 gi|89256653|ref|YP_514015.1| - 1e-32 113.4 0.0 2.1e-32 112.4 0.0 1.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|89256653|ref|YP_514015.1| - 4.6e-11 43.0 34.7 6.9e-11 42.5 34.7 1.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_21 PF13304.6 gi|89256653|ref|YP_514015.1| - 1.2e-09 38.4 7.4 3.7e-08 33.5 7.4 2.4 1 1 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|89256653|ref|YP_514015.1| - 4.4e-09 37.1 17.5 4.6e-08 33.8 17.5 2.1 1 1 0 1 1 1 1 AAA domain AAA_27 PF13514.6 gi|89256653|ref|YP_514015.1| - 2.8e-05 23.8 0.1 4.3e-05 23.2 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|89256653|ref|YP_514015.1| - 6.7e-05 22.5 0.1 0.0013 18.4 0.0 2.3 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_7 PF12775.7 gi|89256653|ref|YP_514015.1| - 0.0019 17.7 0.1 1.6 8.2 0.1 2.4 2 0 0 2 2 2 2 P-loop containing dynein motor region NB-ARC PF00931.22 gi|89256653|ref|YP_514015.1| - 0.0022 17.2 0.0 0.8 8.8 0.0 2.4 2 0 0 2 2 2 2 NB-ARC domain ATPase_2 PF01637.18 gi|89256653|ref|YP_514015.1| - 0.0094 15.9 3.3 0.01 15.8 0.3 2.1 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea ABC_tran PF00005.27 gi|89256653|ref|YP_514015.1| - 0.025 15.1 5.1 0.058 13.9 5.0 2.0 1 1 0 1 1 1 0 ABC transporter AAA_16 PF13191.6 gi|89256653|ref|YP_514015.1| - 0.15 12.4 0.0 0.51 10.7 0.0 1.8 2 1 0 2 2 2 0 AAA ATPase domain LprI PF07007.12 gi|89256654|ref|YP_514016.1| - 0.00011 22.8 0.2 0.0006 20.4 0.2 1.8 1 1 0 1 1 1 1 Lysozyme inhibitor LprI DUF3519 PF12033.8 gi|89256654|ref|YP_514016.1| - 0.091 13.2 0.8 0.12 12.8 0.8 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3519) EamA PF00892.20 gi|89256655|ref|YP_514017.1| - 4.2e-38 130.6 45.9 3.9e-20 72.4 17.8 2.0 2 0 0 2 2 2 2 EamA-like transporter family NTP_transferase PF00483.23 gi|89256656|ref|YP_514018.1| - 1.4e-31 110.0 0.0 1.7e-31 109.7 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|89256656|ref|YP_514018.1| - 3.6e-05 24.2 0.0 5e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|89256656|ref|YP_514018.1| - 0.018 14.8 0.0 0.034 13.9 0.0 1.3 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.19 gi|89256656|ref|YP_514018.1| - 0.046 13.6 0.0 0.083 12.8 0.0 1.3 1 0 0 1 1 1 0 Cytidylyltransferase Cation_efflux PF01545.21 gi|89256657|ref|YP_514019.1| - 2.2e-44 151.6 12.9 2.8e-44 151.3 12.9 1.1 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|89256657|ref|YP_514019.1| - 1.8e-18 66.4 3.7 4.2e-18 65.3 3.7 1.6 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter MS_channel PF00924.18 gi|89256657|ref|YP_514019.1| - 1 8.9 5.5 2.6 7.5 0.6 2.6 2 1 0 2 2 2 0 Mechanosensitive ion channel DUF3040 PF11239.8 gi|89256657|ref|YP_514019.1| - 4.3 7.7 5.7 5.6 7.3 0.5 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF3040) HXXEE PF13787.6 gi|89256658|ref|YP_514020.1| - 1.5e-15 58.0 4.9 1.5e-15 58.0 4.9 2.7 2 1 1 3 3 3 1 Protein of unknown function with HXXEE motif PMT_4TMC PF16192.5 gi|89256658|ref|YP_514020.1| - 7.6 6.1 16.5 0.14 11.7 2.3 3.1 1 1 2 3 3 3 0 C-terminal four TMM region of protein-O-mannosyltransferase Ribosomal_S21 PF01165.20 gi|89256659|ref|YP_514021.1| - 1.1e-15 57.1 4.8 2.5e-15 55.9 4.8 1.6 1 1 0 1 1 1 1 Ribosomal protein S21 CSD PF00313.22 gi|89256660|ref|YP_514022.1| - 8.2e-25 86.5 0.9 8.8e-25 86.4 0.9 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain OB_RNB PF08206.11 gi|89256660|ref|YP_514022.1| - 5.4e-05 22.8 0.3 7.8e-05 22.3 0.3 1.3 1 0 0 1 1 1 1 Ribonuclease B OB domain Glyco_hydro2_C5 PF18565.1 gi|89256660|ref|YP_514022.1| - 0.061 13.2 0.0 0.082 12.8 0.0 1.1 1 0 0 1 1 1 0 Glycoside hydrolase family 2 C-terminal domain 5 Radical_SAM PF04055.21 gi|89256661|ref|YP_514023.1| - 3.8e-11 43.6 0.1 7.1e-11 42.8 0.1 1.5 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|89256661|ref|YP_514023.1| - 4.9e-09 36.6 0.0 9.3e-09 35.7 0.0 1.6 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|89256661|ref|YP_514023.1| - 7.5e-08 32.5 0.2 5e-07 29.9 0.0 2.3 1 1 2 3 3 3 1 4Fe-4S single cluster domain Abhydrolase_3 PF07859.13 gi|89256662|ref|YP_514024.1| - 1.9e-20 73.7 0.0 2.9e-20 73.1 0.0 1.5 2 0 0 2 2 2 1 alpha/beta hydrolase fold COesterase PF00135.28 gi|89256662|ref|YP_514024.1| - 2.5e-16 59.7 0.1 6.7e-16 58.2 0.1 1.6 1 1 0 1 1 1 1 Carboxylesterase family Peptidase_S9 PF00326.21 gi|89256662|ref|YP_514024.1| - 3.3e-12 46.3 0.0 4.6e-08 32.8 0.0 2.4 2 0 0 2 2 2 2 Prolyl oligopeptidase family LIP PF03583.14 gi|89256662|ref|YP_514024.1| - 4.7e-05 22.8 0.1 0.097 12.0 0.0 2.2 2 0 0 2 2 2 2 Secretory lipase Hydrolase_4 PF12146.8 gi|89256662|ref|YP_514024.1| - 6.3e-05 22.3 0.0 0.043 13.1 0.0 2.2 2 0 0 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_2 PF02230.16 gi|89256662|ref|YP_514024.1| - 0.00013 21.9 0.0 0.0082 16.0 0.0 2.2 2 0 0 2 2 2 1 Phospholipase/Carboxylesterase Peptidase_S15 PF02129.18 gi|89256662|ref|YP_514024.1| - 0.00024 20.8 0.0 0.08 12.5 0.0 2.4 2 1 0 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) Chlorophyllase2 PF12740.7 gi|89256662|ref|YP_514024.1| - 0.0074 15.2 0.0 0.0095 14.9 0.0 1.3 1 0 0 1 1 1 1 Chlorophyllase enzyme BAAT_C PF08840.11 gi|89256662|ref|YP_514024.1| - 0.04 13.9 0.0 0.66 9.9 0.0 2.4 1 1 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal DUF2974 PF11187.8 gi|89256662|ref|YP_514024.1| - 0.04 13.5 0.0 0.056 13.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2974) Esterase PF00756.20 gi|89256662|ref|YP_514024.1| - 0.053 13.2 0.1 7.5 6.1 0.0 2.9 3 0 0 3 3 3 0 Putative esterase HTH_IclR PF09339.10 gi|89256663|ref|YP_514025.1| - 3.4e-13 49.2 0.0 5.7e-13 48.5 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain IclR PF01614.18 gi|89256663|ref|YP_514025.1| - 3.2e-11 43.2 0.0 7.7e-11 41.9 0.0 1.7 1 1 0 1 1 1 1 Bacterial transcriptional regulator HTH_24 PF13412.6 gi|89256663|ref|YP_514025.1| - 2.4e-07 30.2 0.2 6.5e-07 28.8 0.0 1.9 2 0 0 2 2 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|89256663|ref|YP_514025.1| - 1e-06 28.6 0.0 2.2e-06 27.5 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|89256663|ref|YP_514025.1| - 1.2e-06 28.2 0.0 2.5e-06 27.3 0.0 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|89256663|ref|YP_514025.1| - 0.0001 22.1 0.0 0.00023 21.0 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB RPA_C PF08784.11 gi|89256663|ref|YP_514025.1| - 0.00014 22.5 0.0 0.00023 21.8 0.0 1.3 1 0 0 1 1 1 1 Replication protein A C terminal Rrf2 PF02082.20 gi|89256663|ref|YP_514025.1| - 0.00018 21.8 0.0 0.00033 20.9 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator HTH_23 PF13384.6 gi|89256663|ref|YP_514025.1| - 0.00028 20.6 0.0 0.00059 19.6 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_Crp_2 PF13545.6 gi|89256663|ref|YP_514025.1| - 0.00035 20.5 0.1 0.011 15.7 0.0 2.6 2 2 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_20 PF12840.7 gi|89256663|ref|YP_514025.1| - 0.00054 20.0 0.0 0.00095 19.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain CENP-B_N PF04218.13 gi|89256663|ref|YP_514025.1| - 0.0056 16.3 0.0 0.015 14.9 0.0 1.8 1 0 0 1 1 1 1 CENP-B N-terminal DNA-binding domain HTH_11 PF08279.12 gi|89256663|ref|YP_514025.1| - 0.0061 16.5 0.1 0.026 14.5 0.0 2.2 2 0 0 2 2 2 1 HTH domain HTH_28 PF13518.6 gi|89256663|ref|YP_514025.1| - 0.015 15.4 0.0 0.036 14.2 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain DUF4423 PF14394.6 gi|89256663|ref|YP_514025.1| - 0.017 14.8 0.0 0.029 14.1 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_40 PF14493.6 gi|89256663|ref|YP_514025.1| - 0.023 15.1 0.2 0.06 13.8 0.1 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_38 PF13936.6 gi|89256663|ref|YP_514025.1| - 0.034 13.9 0.0 0.11 12.3 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|89256663|ref|YP_514025.1| - 0.11 12.5 0.0 0.22 11.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix Intron_maturas2 PF01348.21 gi|89256663|ref|YP_514025.1| - 0.11 12.4 0.0 0.32 11.0 0.0 1.7 1 0 0 1 1 1 0 Type II intron maturase Biotin_lipoyl_2 PF13533.6 gi|89256664|ref|YP_514026.1| - 8.6e-10 38.3 1.7 1.2e-09 37.8 0.1 2.0 2 0 0 2 2 2 1 Biotin-lipoyl like Wzy_C_2 PF11846.8 gi|89256664|ref|YP_514026.1| - 0.073 13.0 0.0 0.087 12.7 0.0 1.2 1 0 0 1 1 1 0 Virulence factor membrane-bound polymerase, C-terminal HlyD PF00529.20 gi|89256665|ref|YP_514027.1| - 0.00087 19.1 0.0 0.0011 18.8 0.0 1.2 1 0 0 1 1 1 1 HlyD membrane-fusion protein of T1SS FUSC PF04632.12 gi|89256666|ref|YP_514028.1| - 4.5e-47 161.0 0.0 5e-47 160.8 0.0 1.0 1 0 0 1 1 1 1 Fusaric acid resistance protein family FUSC_2 PF13515.6 gi|89256666|ref|YP_514028.1| - 1.3e-12 47.9 11.6 1.8e-12 47.4 11.6 1.2 1 0 0 1 1 1 1 Fusaric acid resistance protein-like ArAE_1 PF06081.11 gi|89256666|ref|YP_514028.1| - 7.2e-06 26.2 10.1 7.4e-05 22.9 10.1 2.1 1 1 0 1 1 1 1 Aromatic acid exporter family member 1 DUF2955 PF11168.8 gi|89256666|ref|YP_514028.1| - 1.4e-05 24.9 10.9 2.1e-05 24.4 10.9 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2955) FUSC PF04632.12 gi|89256667|ref|YP_514029.1| - 1.1e-21 77.0 0.0 1.3e-21 76.9 0.0 1.0 1 0 0 1 1 1 1 Fusaric acid resistance protein family DDE_3 PF13358.6 gi|89256668|ref|YP_514030.1| - 9.9e-30 103.2 0.2 3.2e-29 101.6 0.0 1.8 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.16 gi|89256668|ref|YP_514030.1| - 0.0029 17.6 1.5 0.0084 16.2 0.6 2.3 2 1 0 2 2 2 1 Transposase HTH_29 PF13551.6 gi|89256668|ref|YP_514030.1| - 0.0033 17.4 0.0 0.008 16.2 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn helix HTH_40 PF14493.6 gi|89256668|ref|YP_514030.1| - 0.011 16.2 0.1 0.069 13.6 0.0 2.3 3 1 0 3 3 3 0 Helix-turn-helix domain HTH_28 PF13518.6 gi|89256668|ref|YP_514030.1| - 0.026 14.6 0.0 0.073 13.2 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain CENP-B_N PF04218.13 gi|89256668|ref|YP_514030.1| - 0.097 12.3 0.0 0.98 9.1 0.0 2.5 3 0 0 3 3 3 0 CENP-B N-terminal DNA-binding domain HTH_23 PF13384.6 gi|89256668|ref|YP_514030.1| - 0.12 12.2 0.0 0.34 10.8 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain rve PF00665.26 gi|89256668|ref|YP_514030.1| - 0.15 12.3 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 Integrase core domain DDE_Tnp_ISAZ013 PF07592.11 gi|89256668|ref|YP_514030.1| - 0.17 10.9 0.3 1.1 8.1 0.1 2.0 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain DUF2797 PF10977.8 gi|89256669|ref|YP_514031.1| - 3.6e-91 305.2 0.1 4.2e-91 304.9 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2797) DUF3281 PF11685.8 gi|89256671|ref|YP_514033.1| - 0.00054 19.4 0.0 0.0021 17.4 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF3281) PKD PF00801.20 gi|89256671|ref|YP_514033.1| - 0.11 12.3 0.2 0.11 12.3 0.2 2.4 3 0 0 3 3 3 0 PKD domain LptD PF04453.14 gi|89256673|ref|YP_514035.1| - 1.8e-86 290.8 27.5 1.8e-86 290.8 27.5 1.5 1 1 1 2 2 2 2 LPS transport system D S4 PF01479.25 gi|89256674|ref|YP_514036.1| - 3.2e-10 39.5 0.4 1.6e-09 37.3 0.0 2.2 2 0 0 2 2 2 1 S4 domain HMG_box_5 PF14887.6 gi|89256674|ref|YP_514036.1| - 0.08 12.9 2.0 0.5 10.4 0.4 2.1 1 1 1 2 2 2 0 HMG (high mobility group) box 5 Carb_kinase PF01256.17 gi|89256675|ref|YP_514037.1| - 1.9e-51 174.9 1.5 3.7e-51 174.0 1.5 1.4 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.15 gi|89256675|ref|YP_514037.1| - 2.3e-41 141.5 0.1 7e-41 140.0 0.0 1.8 2 0 0 2 2 2 1 YjeF-related protein N-terminus HK PF02110.15 gi|89256675|ref|YP_514037.1| - 3.9e-07 29.7 0.4 9.2e-07 28.5 0.4 1.6 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Phos_pyr_kin PF08543.12 gi|89256675|ref|YP_514037.1| - 7.5e-07 28.8 0.1 1.4e-06 27.9 0.1 1.4 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Asparaginase PF00710.20 gi|89256675|ref|YP_514037.1| - 0.093 12.3 0.5 6.4 6.3 0.1 3.0 2 1 0 2 2 2 0 Asparaginase, N-terminal DUF1971 PF09313.11 gi|89256675|ref|YP_514037.1| - 0.12 12.4 0.0 0.25 11.4 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1971) OmpH PF03938.14 gi|89256675|ref|YP_514037.1| - 0.78 10.1 3.8 1 9.7 0.1 2.7 3 0 0 3 3 3 0 Outer membrane protein (OmpH-like) DUF676 PF05057.14 gi|89256676|ref|YP_514038.1| - 6e-09 35.7 0.4 8e-08 32.0 0.4 2.2 1 1 0 1 1 1 1 Putative serine esterase (DUF676) PGAP1 PF07819.13 gi|89256676|ref|YP_514038.1| - 4e-08 33.3 0.0 1.9e-05 24.5 0.0 2.1 1 1 1 2 2 2 2 PGAP1-like protein DUF900 PF05990.12 gi|89256676|ref|YP_514038.1| - 1.7e-06 27.7 0.0 3.9e-05 23.3 0.0 2.1 2 0 0 2 2 2 1 Alpha/beta hydrolase of unknown function (DUF900) Hydrolase_4 PF12146.8 gi|89256676|ref|YP_514038.1| - 3.8e-06 26.3 0.0 0.007 15.6 0.0 2.3 2 0 0 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 gi|89256676|ref|YP_514038.1| - 4.1e-05 24.3 0.0 4.6e-05 24.1 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family DUF915 PF06028.11 gi|89256676|ref|YP_514038.1| - 6.9e-05 22.3 0.0 0.0016 17.8 0.0 2.6 1 1 1 2 2 2 1 Alpha/beta hydrolase of unknown function (DUF915) Palm_thioest PF02089.15 gi|89256676|ref|YP_514038.1| - 0.00024 21.0 0.0 0.00026 20.9 0.0 1.2 1 0 0 1 1 1 1 Palmitoyl protein thioesterase Abhydrolase_1 PF00561.20 gi|89256676|ref|YP_514038.1| - 0.0013 18.4 0.0 0.018 14.7 0.0 2.3 2 1 0 2 2 2 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.7 gi|89256676|ref|YP_514038.1| - 0.0028 17.4 0.0 0.0048 16.7 0.0 1.5 1 1 0 1 1 1 1 Alpha/beta hydrolase family LCAT PF02450.15 gi|89256676|ref|YP_514038.1| - 0.004 16.4 0.0 0.006 15.8 0.0 1.2 1 0 0 1 1 1 1 Lecithin:cholesterol acyltransferase PGBA_N PF15436.6 gi|89256676|ref|YP_514038.1| - 0.0073 15.9 0.2 0.012 15.3 0.2 1.3 1 0 0 1 1 1 1 Plasminogen-binding protein pgbA N-terminal Ser_hydrolase PF06821.13 gi|89256676|ref|YP_514038.1| - 0.029 14.2 0.0 0.034 14.0 0.0 1.2 1 0 0 1 1 1 0 Serine hydrolase GSHPx PF00255.19 gi|89256677|ref|YP_514039.1| - 9e-37 125.0 0.2 1.1e-36 124.6 0.2 1.1 1 0 0 1 1 1 1 Glutathione peroxidase INT_SG_DDX_CT_C PF15300.6 gi|89256677|ref|YP_514039.1| - 0.12 12.2 0.0 0.2 11.5 0.0 1.3 1 0 0 1 1 1 0 INTS6/SAGE1/DDX26B/CT45 C-terminus CM_2 PF01817.21 gi|89256678|ref|YP_514040.1| - 2.5e-06 27.8 0.2 3.1e-06 27.4 0.2 1.2 1 0 0 1 1 1 1 Chorismate mutase type II Tmemb_55A PF09788.9 gi|89256679|ref|YP_514041.1| - 3.2 6.7 4.5 4.1 6.4 4.5 1.1 1 0 0 1 1 1 0 Transmembrane protein 55A RHD3 PF05879.12 gi|89256679|ref|YP_514041.1| - 4.8 5.2 4.7 5.5 5.0 4.7 1.0 1 0 0 1 1 1 0 Root hair defective 3 GTP-binding protein (RHD3) DDE_Tnp_1_2 PF13586.6 gi|89256680|ref|YP_514042.1| - 1.1e-13 51.4 0.0 2e-13 50.5 0.0 1.5 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|89256680|ref|YP_514042.1| - 5.1e-12 45.9 2.1 4.6e-11 42.8 2.1 2.0 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 gi|89256680|ref|YP_514042.1| - 7.7e-08 32.5 0.0 1.1e-07 32.0 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF4096 PF13340.6 gi|89256680|ref|YP_514042.1| - 0.0061 16.8 0.0 0.012 15.8 0.0 1.5 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) FAD_binding_2 PF00890.24 gi|89256681|ref|YP_514043.1| - 1.8e-82 277.6 0.1 2.2e-82 277.4 0.1 1.0 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|89256681|ref|YP_514043.1| - 9.9e-12 44.7 2.5 3.7e-07 29.7 2.0 3.0 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|89256681|ref|YP_514043.1| - 9.8e-09 34.4 0.2 1.6e-07 30.4 0.5 2.5 2 1 0 2 2 2 1 HI0933-like protein DAO PF01266.24 gi|89256681|ref|YP_514043.1| - 2.6e-08 33.8 1.2 9.1e-07 28.8 1.2 2.3 1 1 0 1 1 1 1 FAD dependent oxidoreductase Succ_DH_flav_C PF02910.20 gi|89256681|ref|YP_514043.1| - 4.2e-08 33.2 0.1 9.3e-08 32.1 0.1 1.6 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term GIDA PF01134.22 gi|89256681|ref|YP_514043.1| - 5.3e-08 32.3 0.9 5.6e-05 22.4 0.7 2.2 2 0 0 2 2 2 2 Glucose inhibited division protein A NAD_binding_8 PF13450.6 gi|89256681|ref|YP_514043.1| - 0.001 19.2 0.1 0.003 17.8 0.1 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.7 gi|89256681|ref|YP_514043.1| - 0.0034 16.8 0.4 0.007 15.8 0.4 1.5 1 0 0 1 1 1 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|89256681|ref|YP_514043.1| - 0.004 16.4 2.1 0.01 15.1 0.5 2.4 3 0 0 3 3 3 1 Thi4 family FAD_binding_3 PF01494.19 gi|89256681|ref|YP_514043.1| - 0.0054 16.0 0.0 0.007 15.7 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain IlvN PF07991.12 gi|89256681|ref|YP_514043.1| - 0.019 14.5 0.4 0.041 13.4 0.4 1.5 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain Pyr_redox PF00070.27 gi|89256681|ref|YP_514043.1| - 0.025 15.1 0.3 0.87 10.2 0.2 2.7 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|89256681|ref|YP_514043.1| - 0.039 13.2 2.7 0.11 11.7 0.6 2.3 1 1 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|89256681|ref|YP_514043.1| - 0.13 11.3 0.5 0.2 10.7 0.5 1.2 1 0 0 1 1 1 0 Lycopene cyclase protein DUF5606 PF18347.1 gi|89256681|ref|YP_514043.1| - 0.13 12.4 0.1 0.56 10.4 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF5606) QRPTase_C PF01729.19 gi|89256682|ref|YP_514044.1| - 6e-56 188.8 2.1 8.4e-56 188.4 2.1 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|89256682|ref|YP_514044.1| - 2.1e-23 82.2 0.2 5.8e-23 80.8 0.1 1.8 2 0 0 2 2 2 1 Quinolinate phosphoribosyl transferase, N-terminal domain IMPDH PF00478.25 gi|89256682|ref|YP_514044.1| - 0.02 13.9 1.0 0.023 13.7 1.0 1.2 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain NadA PF02445.16 gi|89256683|ref|YP_514045.1| - 3.7e-102 341.5 0.0 4.5e-102 341.2 0.0 1.1 1 0 0 1 1 1 1 Quinolinate synthetase A protein Heme_oxygenase PF01126.20 gi|89256683|ref|YP_514045.1| - 0.013 15.3 0.0 0.026 14.3 0.0 1.4 1 0 0 1 1 1 0 Heme oxygenase DDOST_48kD PF03345.14 gi|89256683|ref|YP_514045.1| - 0.14 11.0 0.0 0.45 9.3 0.0 1.6 1 1 1 2 2 2 0 Oligosaccharyltransferase 48 kDa subunit beta Guanylate_kin PF00625.21 gi|89256684|ref|YP_514046.1| - 1.4e-50 171.5 0.1 1.6e-50 171.3 0.1 1.0 1 0 0 1 1 1 1 Guanylate kinase AAA_23 PF13476.6 gi|89256684|ref|YP_514046.1| - 0.0003 21.4 1.7 0.00046 20.7 1.7 1.4 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|89256684|ref|YP_514046.1| - 0.001 19.3 0.0 0.004 17.3 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|89256684|ref|YP_514046.1| - 0.0032 17.8 0.0 0.0079 16.5 0.0 1.9 1 1 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.23 gi|89256684|ref|YP_514046.1| - 0.004 17.2 0.0 0.0052 16.9 0.0 1.5 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_16 PF13191.6 gi|89256684|ref|YP_514046.1| - 0.0083 16.5 0.1 0.011 16.1 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_18 PF13238.6 gi|89256684|ref|YP_514046.1| - 0.0092 16.5 0.2 0.032 14.8 0.2 1.8 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|89256684|ref|YP_514046.1| - 0.022 14.7 0.1 0.21 11.5 0.0 2.1 2 0 0 2 2 2 0 RsgA GTPase Viral_helicase1 PF01443.18 gi|89256684|ref|YP_514046.1| - 0.072 12.8 0.0 1.7 8.4 0.0 2.1 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase ABC_tran PF00005.27 gi|89256684|ref|YP_514046.1| - 0.075 13.6 0.1 0.14 12.7 0.1 1.8 1 1 0 1 1 1 0 ABC transporter DUF4921 PF16268.5 gi|89256684|ref|YP_514046.1| - 0.082 11.7 0.0 0.11 11.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4921) DEAD PF00270.29 gi|89256685|ref|YP_514047.1| - 5.5e-52 176.1 0.4 3.9e-50 170.0 0.0 2.3 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|89256685|ref|YP_514047.1| - 1.9e-33 115.1 0.3 1e-31 109.6 0.3 2.8 3 0 0 3 3 3 1 Helicase conserved C-terminal domain DbpA PF03880.15 gi|89256685|ref|YP_514047.1| - 1.1e-18 67.0 0.6 2.3e-18 65.9 0.1 1.9 2 0 0 2 2 2 1 DbpA RNA binding domain ResIII PF04851.15 gi|89256685|ref|YP_514047.1| - 1.9e-08 34.5 0.0 6.6e-08 32.7 0.0 1.9 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit UTP25 PF06862.12 gi|89256685|ref|YP_514047.1| - 8.4e-05 21.5 0.5 0.023 13.5 0.1 3.3 2 1 2 4 4 4 2 Utp25, U3 small nucleolar RNA-associated SSU processome protein 25 AAA_30 PF13604.6 gi|89256685|ref|YP_514047.1| - 0.00064 19.5 0.0 0.0015 18.3 0.0 1.7 1 1 0 1 1 1 1 AAA domain CMS1 PF14617.6 gi|89256685|ref|YP_514047.1| - 0.00064 19.1 0.1 0.00064 19.1 0.1 2.3 2 1 1 3 3 3 1 U3-containing 90S pre-ribosomal complex subunit Rotamase PF00639.21 gi|89256686|ref|YP_514048.1| - 1.4e-20 74.0 0.0 1.6e-20 73.9 0.0 1.0 1 0 0 1 1 1 1 PPIC-type PPIASE domain Rotamase_3 PF13616.6 gi|89256686|ref|YP_514048.1| - 1e-15 58.3 0.0 1.2e-15 58.1 0.0 1.1 1 0 0 1 1 1 1 PPIC-type PPIASE domain Rotamase_2 PF13145.6 gi|89256686|ref|YP_514048.1| - 0.03 15.2 0.0 0.036 14.9 0.0 1.1 1 0 0 1 1 1 0 PPIC-type PPIASE domain Sugar_tr PF00083.24 gi|89256687|ref|YP_514049.1| - 9.7e-101 337.8 36.4 1.1e-100 337.6 36.4 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|89256687|ref|YP_514049.1| - 1.6e-22 79.9 35.4 1.6e-22 79.9 35.4 1.9 2 0 0 2 2 2 1 Major Facilitator Superfamily MFS_2 PF13347.6 gi|89256687|ref|YP_514049.1| - 9e-06 24.5 44.1 0.0044 15.6 5.5 3.6 1 1 2 3 3 3 2 MFS/sugar transport protein UPF0542 PF15086.6 gi|89256687|ref|YP_514049.1| - 7.2 6.6 6.2 0.53 10.2 0.4 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0542 Sugar_tr PF00083.24 gi|89256688|ref|YP_514050.1| - 4.5e-112 375.2 33.2 5.1e-112 375.0 33.2 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|89256688|ref|YP_514050.1| - 8.2e-39 133.5 38.5 4e-37 128.0 34.6 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily TRI12 PF06609.13 gi|89256688|ref|YP_514050.1| - 3.8e-07 28.9 5.4 3.8e-07 28.9 5.4 1.8 2 0 0 2 2 2 1 Fungal trichothecene efflux pump (TRI12) GalP_UDP_transf PF01087.22 gi|89256689|ref|YP_514051.1| - 1.8e-68 230.6 0.3 3e-68 229.9 0.3 1.3 1 0 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, N-terminal domain GalP_UDP_tr_C PF02744.17 gi|89256689|ref|YP_514051.1| - 1.1e-58 197.7 0.6 7.5e-57 191.7 0.2 2.2 1 1 1 2 2 2 2 Galactose-1-phosphate uridyl transferase, C-terminal domain DUF4921 PF16268.5 gi|89256689|ref|YP_514051.1| - 0.013 14.3 0.3 0.58 8.9 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4921) HIT PF01230.23 gi|89256689|ref|YP_514051.1| - 0.027 15.2 0.0 0.13 13.0 0.0 2.1 2 0 0 2 2 2 0 HIT domain DUF1564 PF07600.11 gi|89256689|ref|YP_514051.1| - 0.028 14.1 0.4 0.081 12.6 0.4 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1564) GalKase_gal_bdg PF10509.9 gi|89256690|ref|YP_514052.1| - 1.2e-22 79.1 0.1 2.2e-22 78.3 0.1 1.4 1 0 0 1 1 1 1 Galactokinase galactose-binding signature GHMP_kinases_N PF00288.26 gi|89256690|ref|YP_514052.1| - 5.9e-15 55.3 0.0 5.9e-15 55.3 0.0 1.8 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|89256690|ref|YP_514052.1| - 2.5e-12 47.0 0.0 7.7e-12 45.4 0.0 1.8 1 0 0 1 1 1 1 GHMP kinases C terminal HIT PF01230.23 gi|89256691|ref|YP_514053.1| - 1.5e-08 35.3 0.1 1.9e-08 34.9 0.1 1.2 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 gi|89256691|ref|YP_514053.1| - 0.07 13.6 0.1 0.1 13.1 0.1 1.2 1 0 0 1 1 1 0 Scavenger mRNA decapping enzyme C-term binding CTP_transf_3 PF02348.19 gi|89256692|ref|YP_514054.1| - 1e-60 205.4 0.8 1.3e-60 205.0 0.8 1.0 1 0 0 1 1 1 1 Cytidylyltransferase NTP_transf_3 PF12804.7 gi|89256692|ref|YP_514054.1| - 2.2e-11 44.4 0.0 3.1e-11 43.9 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain ADH_zinc_N PF00107.26 gi|89256692|ref|YP_514054.1| - 0.017 15.1 0.6 0.18 11.8 0.5 2.6 2 1 0 2 2 2 0 Zinc-binding dehydrogenase NTP_transferase PF00483.23 gi|89256692|ref|YP_514054.1| - 0.064 12.8 1.2 0.066 12.8 0.2 1.5 2 0 0 2 2 2 0 Nucleotidyl transferase DUF2064 PF09837.9 gi|89256692|ref|YP_514054.1| - 0.091 12.6 0.0 0.15 11.9 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2064) Trm112p PF03966.16 gi|89256693|ref|YP_514055.1| - 1.1e-09 38.7 1.0 1.9e-09 37.9 0.3 1.8 2 0 0 2 2 2 1 Trm112p-like protein ADD_ATRX PF17981.1 gi|89256693|ref|YP_514055.1| - 0.0016 18.2 3.3 0.0035 17.2 0.2 2.1 1 1 1 2 2 2 1 Cysteine Rich ADD domain TF_Zn_Ribbon PF08271.12 gi|89256693|ref|YP_514055.1| - 0.013 15.0 0.2 0.023 14.2 0.2 1.4 1 0 0 1 1 1 0 TFIIB zinc-binding zf-C3HC4_5 PF17121.5 gi|89256693|ref|YP_514055.1| - 0.058 13.3 0.9 0.1 12.5 0.9 1.5 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) DUF2318 PF10080.9 gi|89256693|ref|YP_514055.1| - 0.059 13.5 0.1 0.067 13.3 0.1 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) PAP2 PF01569.21 gi|89256694|ref|YP_514056.1| - 8.4e-16 58.0 3.4 8.8e-16 57.9 3.4 1.0 1 0 0 1 1 1 1 PAP2 superfamily PAP2_3 PF14378.6 gi|89256694|ref|YP_514056.1| - 2.2e-09 37.3 1.9 2.5e-09 37.1 1.9 1.0 1 0 0 1 1 1 1 PAP2 superfamily PAP2_C PF14360.6 gi|89256694|ref|YP_514056.1| - 0.00034 21.1 3.3 0.00049 20.6 3.3 1.2 1 0 0 1 1 1 1 PAP2 superfamily C-terminal FUSC_2 PF13515.6 gi|89256694|ref|YP_514056.1| - 0.017 15.3 3.5 0.023 14.8 3.5 1.3 1 1 0 1 1 1 0 Fusaric acid resistance protein-like DDE_3 PF13358.6 gi|89256695|ref|YP_514057.1| - 9.9e-30 103.2 0.2 3.2e-29 101.6 0.0 1.8 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.16 gi|89256695|ref|YP_514057.1| - 0.0029 17.6 1.5 0.0084 16.2 0.6 2.3 2 1 0 2 2 2 1 Transposase HTH_29 PF13551.6 gi|89256695|ref|YP_514057.1| - 0.0033 17.4 0.0 0.008 16.2 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn helix HTH_40 PF14493.6 gi|89256695|ref|YP_514057.1| - 0.011 16.2 0.1 0.069 13.6 0.0 2.3 3 1 0 3 3 3 0 Helix-turn-helix domain HTH_28 PF13518.6 gi|89256695|ref|YP_514057.1| - 0.026 14.6 0.0 0.073 13.2 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain CENP-B_N PF04218.13 gi|89256695|ref|YP_514057.1| - 0.097 12.3 0.0 0.98 9.1 0.0 2.5 3 0 0 3 3 3 0 CENP-B N-terminal DNA-binding domain HTH_23 PF13384.6 gi|89256695|ref|YP_514057.1| - 0.12 12.2 0.0 0.34 10.8 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain rve PF00665.26 gi|89256695|ref|YP_514057.1| - 0.15 12.3 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 Integrase core domain DDE_Tnp_ISAZ013 PF07592.11 gi|89256695|ref|YP_514057.1| - 0.17 10.9 0.3 1.1 8.1 0.1 2.0 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain SNARE_assoc PF09335.11 gi|89256696|ref|YP_514058.1| - 3.5e-19 69.4 9.5 7e-19 68.5 9.5 1.5 1 0 0 1 1 1 1 SNARE associated Golgi protein TMEMspv1-c74-12 PF11044.8 gi|89256696|ref|YP_514058.1| - 0.27 11.3 3.8 0.21 11.6 0.8 2.4 2 0 0 2 2 2 0 Plectrovirus spv1-c74 ORF 12 transmembrane protein Ribosomal_L20 PF00453.18 gi|89256697|ref|YP_514059.1| - 1.3e-48 163.5 8.7 1.5e-48 163.3 8.7 1.0 1 0 0 1 1 1 1 Ribosomal protein L20 Parvo_coat_N PF08398.10 gi|89256697|ref|YP_514059.1| - 0.02 15.0 0.0 0.046 13.9 0.0 1.6 1 0 0 1 1 1 0 Parvovirus coat protein VP1 Ribosomal_L35p PF01632.19 gi|89256698|ref|YP_514060.1| - 2.7e-20 72.6 10.3 2.9e-20 72.5 10.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L35 IF3_C PF00707.22 gi|89256699|ref|YP_514061.1| - 1.1e-38 131.0 1.1 1.7e-38 130.5 1.1 1.3 1 0 0 1 1 1 1 Translation initiation factor IF-3, C-terminal domain IF3_N PF05198.16 gi|89256699|ref|YP_514061.1| - 9.9e-24 83.4 0.1 2e-23 82.4 0.1 1.5 1 0 0 1 1 1 1 Translation initiation factor IF-3, N-terminal domain Pox_A32 PF04665.12 gi|89256699|ref|YP_514061.1| - 0.041 13.4 0.1 0.049 13.1 0.1 1.2 1 0 0 1 1 1 0 Poxvirus A32 protein tRNA-synt_2b PF00587.25 gi|89256700|ref|YP_514062.1| - 8.1e-43 146.5 0.0 1.4e-42 145.6 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|89256700|ref|YP_514062.1| - 1.4e-19 70.0 0.1 4.6e-19 68.4 0.1 1.9 1 0 0 1 1 1 1 Anticodon binding domain tRNA_SAD PF07973.14 gi|89256700|ref|YP_514062.1| - 2.2e-13 50.1 0.0 4.6e-13 49.0 0.0 1.6 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain TGS PF02824.21 gi|89256700|ref|YP_514062.1| - 6.7e-08 32.5 0.0 1.7e-07 31.2 0.0 1.7 1 0 0 1 1 1 1 TGS domain TUDOR PF00567.24 gi|89256700|ref|YP_514062.1| - 0.1 12.6 0.1 1.4 9.0 0.0 2.3 2 0 0 2 2 2 0 Tudor domain LPMO_10 PF03067.15 gi|89256701|ref|YP_514063.1| - 5.9e-25 89.1 0.5 5.9e-25 89.1 0.5 2.3 3 0 0 3 3 3 1 Lytic polysaccharide mono-oxygenase, cellulose-degrading CBM_5_12 PF02839.14 gi|89256701|ref|YP_514063.1| - 0.00037 20.9 7.8 0.00037 20.9 7.8 4.5 5 0 0 5 5 5 1 Carbohydrate binding domain DUF3244 PF11589.8 gi|89256701|ref|YP_514063.1| - 0.0063 16.6 0.7 0.023 14.8 0.5 2.1 1 1 0 1 1 1 1 Domain of unknown function (DUF3244) Invasin_D3 PF09134.10 gi|89256701|ref|YP_514063.1| - 0.024 14.9 2.3 0.07 13.5 0.2 2.8 2 1 1 3 3 3 0 Invasin, domain 3 MG2 PF01835.19 gi|89256701|ref|YP_514063.1| - 0.075 13.5 0.0 0.32 11.5 0.0 2.2 2 0 0 2 2 2 0 MG2 domain DUF1573 PF07610.11 gi|89256701|ref|YP_514063.1| - 0.12 12.4 0.1 0.41 10.7 0.1 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF1573) GCV_H PF01597.19 gi|89256702|ref|YP_514064.1| - 1.2e-37 128.5 0.2 1.4e-37 128.3 0.2 1.0 1 0 0 1 1 1 1 Glycine cleavage H-protein Biotin_lipoyl PF00364.22 gi|89256702|ref|YP_514064.1| - 0.0096 15.7 0.1 0.02 14.7 0.1 1.5 1 0 0 1 1 1 1 Biotin-requiring enzyme RnfC_N PF13375.6 gi|89256702|ref|YP_514064.1| - 0.12 12.4 0.0 0.18 11.8 0.0 1.3 1 0 0 1 1 1 0 RnfC Barrel sandwich hybrid domain Glyco_tran_28_C PF04101.16 gi|89256703|ref|YP_514065.1| - 1.5e-41 142.2 0.5 3.1e-41 141.1 0.5 1.5 1 0 0 1 1 1 1 Glycosyltransferase family 28 C-terminal domain Glyco_transf_28 PF03033.20 gi|89256703|ref|YP_514065.1| - 1.9e-38 131.7 0.4 3.4e-38 130.8 0.4 1.5 1 0 0 1 1 1 1 Glycosyltransferase family 28 N-terminal domain UDPGT PF00201.18 gi|89256703|ref|YP_514065.1| - 0.0058 15.5 0.0 0.012 14.4 0.0 1.5 1 0 0 1 1 1 1 UDP-glucoronosyl and UDP-glucosyl transferase PMBR PF09373.10 gi|89256703|ref|YP_514065.1| - 0.14 12.4 0.0 1.1 9.5 0.0 2.4 2 0 0 2 2 2 0 Pseudomurein-binding repeat YbaB_DNA_bd PF02575.16 gi|89256704|ref|YP_514066.1| - 5.9e-29 100.1 10.1 7e-29 99.9 10.1 1.1 1 0 0 1 1 1 1 YbaB/EbfC DNA-binding family TrwC PF08751.11 gi|89256704|ref|YP_514066.1| - 0.054 13.0 0.5 0.066 12.7 0.5 1.2 1 0 0 1 1 1 0 TrwC relaxase Macro PF01661.21 gi|89256704|ref|YP_514066.1| - 0.074 13.1 0.1 0.084 12.9 0.1 1.2 1 0 0 1 1 1 0 Macro domain ComFB PF10719.9 gi|89256704|ref|YP_514066.1| - 0.17 12.0 2.0 0.3 11.2 0.1 1.9 2 0 0 2 2 2 0 Late competence development protein ComFB Toprim_4 PF13662.6 gi|89256705|ref|YP_514067.1| - 1.2e-20 73.8 0.0 2.2e-20 72.9 0.0 1.5 1 0 0 1 1 1 1 Toprim domain RecR PF02132.15 gi|89256705|ref|YP_514067.1| - 1.8e-11 43.4 3.9 2.9e-11 42.7 3.9 1.4 1 0 0 1 1 1 1 RecR protein Toprim PF01751.22 gi|89256705|ref|YP_514067.1| - 1.1e-07 32.0 0.2 2.4e-07 30.9 0.1 1.6 2 0 0 2 2 2 1 Toprim domain HD_4 PF13328.6 gi|89256706|ref|YP_514068.1| - 1.2e-54 184.3 0.2 2.6e-54 183.2 0.2 1.6 1 0 0 1 1 1 1 HD domain RelA_SpoT PF04607.17 gi|89256706|ref|YP_514068.1| - 3.2e-32 111.2 0.4 3.2e-32 111.2 0.4 2.6 3 0 0 3 3 3 1 Region found in RelA / SpoT proteins TGS PF02824.21 gi|89256706|ref|YP_514068.1| - 2.1e-21 75.7 0.0 5.2e-21 74.5 0.0 1.7 1 0 0 1 1 1 1 TGS domain HD PF01966.22 gi|89256706|ref|YP_514068.1| - 3.3e-11 43.4 1.1 9.9e-11 41.9 0.3 2.3 2 0 0 2 2 2 1 HD domain ACT_4 PF13291.6 gi|89256706|ref|YP_514068.1| - 1e-07 32.4 0.2 3.3e-07 30.8 0.2 1.9 1 0 0 1 1 1 1 ACT domain ACT PF01842.25 gi|89256706|ref|YP_514068.1| - 1.2e-05 25.0 1.0 5.8e-05 22.8 0.2 2.4 2 0 0 2 2 2 1 ACT domain SIS PF01380.22 gi|89256706|ref|YP_514068.1| - 0.021 14.7 0.0 5.5 6.8 0.0 2.4 2 0 0 2 2 2 0 SIS domain ThiS PF02597.20 gi|89256706|ref|YP_514068.1| - 0.034 14.8 0.1 0.21 12.2 0.0 2.3 2 0 0 2 2 2 0 ThiS family DUF2344 PF10105.9 gi|89256706|ref|YP_514068.1| - 0.035 13.9 4.6 0.11 12.4 0.2 2.9 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2344) Myb_DNA-bind_4 PF13837.6 gi|89256706|ref|YP_514068.1| - 0.16 12.3 2.4 0.19 12.2 0.4 2.1 2 0 0 2 2 2 0 Myb/SANT-like DNA-binding domain MuF_C PF18819.1 gi|89256706|ref|YP_514068.1| - 0.25 11.3 2.4 0.52 10.3 0.0 2.7 3 0 0 3 3 3 0 Phage MuF-C-terminal domain RAP PF08373.10 gi|89256707|ref|YP_514069.1| - 0.13 12.4 0.0 0.3 11.2 0.0 1.6 1 0 0 1 1 1 0 RAP domain Caps_synth_CapC PF14102.6 gi|89256708|ref|YP_514070.1| - 1.6e-33 115.7 14.0 1.6e-33 115.7 14.0 1.3 2 0 0 2 2 2 1 Capsule biosynthesis CapC DUF1689 PF07954.11 gi|89256708|ref|YP_514070.1| - 0.24 11.8 3.3 0.18 12.2 1.9 1.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1689) Mur_ligase_M PF08245.12 gi|89256709|ref|YP_514071.1| - 8.2e-09 35.7 0.0 1.7e-08 34.7 0.0 1.6 1 0 0 1 1 1 1 Mur ligase middle domain MFS_1 PF07690.16 gi|89256710|ref|YP_514072.1| - 4.6e-29 101.4 87.6 2.9e-24 85.6 51.2 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|89256710|ref|YP_514072.1| - 2.7e-23 82.6 41.0 1.7e-19 70.1 19.2 2.1 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_2 PF13347.6 gi|89256710|ref|YP_514072.1| - 1.4e-07 30.5 15.4 1.4e-07 30.5 15.4 2.8 2 1 2 4 4 4 2 MFS/sugar transport protein Asparaginase_2 PF01112.18 gi|89256711|ref|YP_514073.1| - 1.5e-73 247.5 8.2 1e-72 244.8 8.2 1.8 1 1 0 1 1 1 1 Asparaginase S-l_SbsC_C PF18316.1 gi|89256711|ref|YP_514073.1| - 0.047 14.2 0.1 15 6.2 0.0 2.9 2 0 0 2 2 2 0 S-layer protein SbsC C-terminal domain Peptidase_S51 PF03575.17 gi|89256712|ref|YP_514074.1| - 1e-19 71.0 0.0 1.3e-19 70.7 0.0 1.1 1 0 0 1 1 1 1 Peptidase family S51 Peptidase_C25_C PF03785.14 gi|89256712|ref|YP_514074.1| - 0.019 14.8 0.0 0.042 13.7 0.0 1.5 1 0 0 1 1 1 0 Peptidase family C25, C terminal ig-like domain PfkB PF00294.24 gi|89256713|ref|YP_514075.1| - 1.3e-39 136.3 0.4 3e-38 131.8 0.4 2.0 1 1 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 gi|89256713|ref|YP_514075.1| - 0.00086 18.8 0.0 0.0019 17.6 0.0 1.6 1 1 0 1 1 1 1 Phosphomethylpyrimidine kinase HAD_2 PF13419.6 gi|89256714|ref|YP_514076.1| - 6.6e-16 58.9 1.3 8.1e-16 58.6 1.3 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|89256714|ref|YP_514076.1| - 3.9e-09 37.1 0.0 3.8e-07 30.6 0.0 2.2 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|89256714|ref|YP_514076.1| - 6.7e-06 26.6 0.0 8.5e-06 26.3 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Acid_PPase PF12689.7 gi|89256714|ref|YP_514076.1| - 2.4e-05 24.2 1.1 0.006 16.4 0.1 3.1 1 1 1 3 3 3 2 Acid Phosphatase Hydrolase_like PF13242.6 gi|89256714|ref|YP_514076.1| - 0.0027 17.7 0.0 0.0055 16.7 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like ATPgrasp_N PF18130.1 gi|89256714|ref|YP_514076.1| - 0.008 16.7 0.0 4 8.1 0.0 2.4 2 0 0 2 2 2 2 ATP-grasp N-terminal domain Glycos_transf_1 PF00534.20 gi|89256715|ref|YP_514077.1| - 5.1e-28 97.7 0.1 8.1e-28 97.1 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|89256715|ref|YP_514077.1| - 3.1e-18 66.5 0.0 5.3e-18 65.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|89256715|ref|YP_514077.1| - 3.5e-08 33.6 0.0 8.6e-08 32.4 0.0 1.6 1 1 1 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|89256715|ref|YP_514077.1| - 7.1e-08 32.7 0.0 1.2e-07 32.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_2 PF00535.26 gi|89256716|ref|YP_514078.1| - 2.4e-35 121.9 0.3 4.3e-35 121.0 0.3 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|89256716|ref|YP_514078.1| - 3.1e-13 50.1 0.0 4.6e-13 49.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|89256716|ref|YP_514078.1| - 3.8e-12 46.3 5.9 1.2e-11 44.6 5.9 1.8 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|89256716|ref|YP_514078.1| - 9.5e-06 26.1 0.2 3.3e-05 24.3 0.2 2.0 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.6 gi|89256716|ref|YP_514078.1| - 0.012 15.5 0.0 0.016 15.1 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 gi|89256716|ref|YP_514078.1| - 0.028 13.9 0.0 0.049 13.1 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase family 21 Rhamno_transf PF11316.8 gi|89256716|ref|YP_514078.1| - 0.096 12.1 0.0 0.16 11.3 0.0 1.4 1 0 0 1 1 1 0 Putative rhamnosyl transferase Glycos_transf_2 PF00535.26 gi|89256717|ref|YP_514079.1| - 2.7e-39 134.7 2.2 2.8e-39 134.7 0.8 1.7 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|89256717|ref|YP_514079.1| - 1.1e-14 55.0 0.0 1.5e-14 54.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|89256717|ref|YP_514079.1| - 2.1e-13 50.4 1.8 3.8e-13 49.5 1.8 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|89256717|ref|YP_514079.1| - 0.00012 22.5 0.2 0.00089 19.7 0.1 2.5 2 1 0 2 2 2 1 Glycosyl transferase family 2 HECW_N PF16562.5 gi|89256717|ref|YP_514079.1| - 0.095 12.5 3.0 0.11 12.3 0.1 2.2 2 1 0 2 2 2 0 N-terminal domain of E3 ubiquitin-protein ligase HECW1 and 2 LicD PF04991.13 gi|89256718|ref|YP_514080.1| - 1.1e-09 38.8 16.4 4.4e-09 36.8 3.3 2.6 2 1 1 3 3 3 2 LicD family Methyltransf_25 PF13649.6 gi|89256719|ref|YP_514081.1| - 4.5e-07 30.5 0.0 7.1e-07 29.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|89256719|ref|YP_514081.1| - 5.5e-07 28.9 0.1 1.3e-06 27.7 0.1 1.6 1 1 1 2 2 2 1 Ribosomal RNA adenine dimethylase Methyltransf_11 PF08241.12 gi|89256719|ref|YP_514081.1| - 3.9e-06 27.4 0.0 6.4e-06 26.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|89256719|ref|YP_514081.1| - 5.1e-06 26.4 1.4 6.1e-05 22.9 1.4 2.2 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|89256719|ref|YP_514081.1| - 2.3e-05 24.3 0.0 8.4e-05 22.5 0.0 1.7 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|89256719|ref|YP_514081.1| - 0.00018 22.2 0.1 0.00058 20.6 0.1 1.9 1 1 0 1 1 1 1 Methyltransferase domain DREV PF05219.12 gi|89256719|ref|YP_514081.1| - 0.00018 20.7 0.2 0.00023 20.4 0.2 1.3 1 0 0 1 1 1 1 DREV methyltransferase NodS PF05401.11 gi|89256719|ref|YP_514081.1| - 0.0006 19.5 0.0 0.00078 19.1 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) CheR PF01739.18 gi|89256719|ref|YP_514081.1| - 0.00076 19.0 0.6 0.0011 18.4 0.6 1.4 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain GidB PF02527.15 gi|89256719|ref|YP_514081.1| - 0.0011 18.4 0.4 0.0039 16.5 0.4 1.9 1 1 0 1 1 1 1 rRNA small subunit methyltransferase G FtsJ PF01728.19 gi|89256719|ref|YP_514081.1| - 0.006 16.7 0.0 0.0075 16.4 0.0 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase MTS PF05175.14 gi|89256719|ref|YP_514081.1| - 0.099 12.2 0.2 0.19 11.3 0.2 1.6 1 1 0 1 1 1 0 Methyltransferase small domain Hydrolase PF00702.26 gi|89256720|ref|YP_514082.1| - 2.6e-08 34.4 2.1 5.5e-06 26.8 2.1 2.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase NTP_transf_3 PF12804.7 gi|89256720|ref|YP_514082.1| - 5.9e-08 33.2 0.0 2.1e-07 31.5 0.0 1.8 2 0 0 2 2 2 1 MobA-like NTP transferase domain Hydrolase_3 PF08282.12 gi|89256720|ref|YP_514082.1| - 2.9e-06 27.2 0.9 0.00011 22.0 0.2 2.5 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|89256720|ref|YP_514082.1| - 4.9e-06 27.1 0.0 8.9e-06 26.2 0.0 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.12 gi|89256720|ref|YP_514082.1| - 1.6e-05 24.4 0.2 0.016 14.6 0.0 2.2 2 0 0 2 2 2 2 Putative Phosphatase IspD PF01128.19 gi|89256720|ref|YP_514082.1| - 0.00097 18.9 0.0 0.0017 18.2 0.0 1.4 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Hydrolase_6 PF13344.6 gi|89256720|ref|YP_514082.1| - 0.022 14.9 0.1 7.2 6.8 0.0 3.2 3 0 0 3 3 3 0 Haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|89256720|ref|YP_514082.1| - 0.023 14.8 4.5 0.063 13.4 2.2 2.6 2 1 0 2 2 2 0 Haloacid dehalogenase-like hydrolase Alpha-amylase_C PF02806.18 gi|89256720|ref|YP_514082.1| - 0.031 14.8 0.3 6.3 7.4 0.1 2.4 2 0 0 2 2 2 0 Alpha amylase, C-terminal all-beta domain FAM198 PF15051.6 gi|89256720|ref|YP_514082.1| - 0.11 11.4 0.0 0.24 10.2 0.0 1.5 1 0 0 1 1 1 0 FAM198 protein UDPGP PF01704.18 gi|89256720|ref|YP_514082.1| - 0.12 11.0 0.9 3.6 6.1 0.1 2.3 1 1 1 2 2 2 0 UTP--glucose-1-phosphate uridylyltransferase ABC_tran PF00005.27 gi|89256721|ref|YP_514083.1| - 3.9e-32 111.6 0.0 7e-32 110.8 0.0 1.4 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.23 gi|89256721|ref|YP_514083.1| - 6.3e-14 52.3 30.1 1.2e-13 51.4 29.9 1.6 1 1 0 1 1 1 1 ABC transporter transmembrane region SMC_N PF02463.19 gi|89256721|ref|YP_514083.1| - 2.3e-08 33.7 0.8 2.6e-06 27.1 0.8 2.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|89256721|ref|YP_514083.1| - 8.9e-06 25.7 0.0 4e-05 23.6 0.0 2.1 2 0 0 2 2 2 1 RsgA GTPase AAA_29 PF13555.6 gi|89256721|ref|YP_514083.1| - 1.2e-05 24.9 0.3 3e-05 23.7 0.3 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain DEAD PF00270.29 gi|89256721|ref|YP_514083.1| - 0.00077 19.3 0.4 0.0029 17.4 0.4 1.9 1 1 0 1 1 1 1 DEAD/DEAH box helicase AAA_10 PF12846.7 gi|89256721|ref|YP_514083.1| - 0.001 18.1 0.0 0.0018 17.3 0.0 1.3 1 0 0 1 1 1 1 AAA-like domain AAA_21 PF13304.6 gi|89256721|ref|YP_514083.1| - 0.0025 17.7 0.1 0.0085 15.9 0.1 1.9 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|89256721|ref|YP_514083.1| - 0.0054 17.0 0.3 0.071 13.4 0.3 2.4 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|89256721|ref|YP_514083.1| - 0.016 15.6 0.0 0.029 14.8 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain Cytidylate_kin PF02224.18 gi|89256721|ref|YP_514083.1| - 0.049 13.4 0.0 0.083 12.6 0.0 1.3 1 0 0 1 1 1 0 Cytidylate kinase AAA_25 PF13481.6 gi|89256721|ref|YP_514083.1| - 0.06 12.9 0.1 0.61 9.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|89256721|ref|YP_514083.1| - 0.061 12.8 0.0 0.12 11.8 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_33 PF13671.6 gi|89256721|ref|YP_514083.1| - 0.071 13.3 0.0 0.13 12.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|89256721|ref|YP_514083.1| - 0.097 12.7 0.0 0.98 9.4 0.0 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) MMR_HSR1 PF01926.23 gi|89256721|ref|YP_514083.1| - 0.1 12.7 0.0 0.37 10.9 0.0 1.9 2 0 0 2 2 2 0 50S ribosome-binding GTPase RNA_helicase PF00910.22 gi|89256721|ref|YP_514083.1| - 0.1 13.0 0.1 1.5 9.3 0.0 2.6 2 0 0 2 2 2 0 RNA helicase AAA_23 PF13476.6 gi|89256721|ref|YP_514083.1| - 0.12 12.8 3.9 0.5 10.8 3.0 2.6 1 1 1 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|89256721|ref|YP_514083.1| - 0.26 11.0 0.2 1.1 9.0 0.2 2.0 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|89256721|ref|YP_514083.1| - 0.26 11.7 2.5 1.9 8.9 0.8 2.7 2 1 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) Wzy_C PF04932.15 gi|89256721|ref|YP_514083.1| - 0.4 10.3 16.6 1.5 8.4 0.2 3.2 3 0 0 3 3 3 0 O-Antigen ligase AAA_24 PF13479.6 gi|89256721|ref|YP_514083.1| - 0.45 10.2 2.0 2.2 8.0 0.1 2.5 3 0 0 3 3 3 0 AAA domain Glycos_transf_1 PF00534.20 gi|89256722|ref|YP_514084.1| - 6.3e-30 104.0 0.2 1.4e-29 102.9 0.2 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|89256722|ref|YP_514084.1| - 5.2e-20 72.3 0.0 1.2e-19 71.0 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|89256722|ref|YP_514084.1| - 2.5e-13 50.4 0.0 4.6e-13 49.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.6 gi|89256722|ref|YP_514084.1| - 4e-09 36.6 3.4 1.3e-08 35.0 2.3 2.2 2 0 0 2 2 2 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.6 gi|89256722|ref|YP_514084.1| - 7.4e-05 23.1 0.0 0.00015 22.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|89256722|ref|YP_514084.1| - 0.0036 17.8 0.0 0.0054 17.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain GDP_Man_Dehyd PF16363.5 gi|89256723|ref|YP_514085.1| - 1.2e-59 202.4 0.0 1.9e-59 201.7 0.0 1.3 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|89256723|ref|YP_514085.1| - 4.1e-57 193.4 0.0 4.9e-57 193.2 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|89256723|ref|YP_514085.1| - 2.4e-20 72.7 0.1 8.8e-20 70.9 0.1 1.7 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|89256723|ref|YP_514085.1| - 1.3e-18 67.1 0.0 7.2e-18 64.7 0.0 1.9 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|89256723|ref|YP_514085.1| - 1.8e-13 50.3 0.0 3.6e-13 49.3 0.0 1.4 2 0 0 2 2 2 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|89256723|ref|YP_514085.1| - 2.6e-08 33.4 0.0 1.6e-05 24.2 0.0 2.3 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.6 gi|89256723|ref|YP_514085.1| - 6.6e-08 32.7 0.0 1.1e-07 31.9 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding adh_short PF00106.25 gi|89256723|ref|YP_514085.1| - 5.1e-07 29.3 0.0 5e-06 26.1 0.0 2.1 1 1 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|89256723|ref|YP_514085.1| - 1.4e-06 28.3 0.0 2.3e-06 27.6 0.0 1.3 1 0 0 1 1 1 1 KR domain NmrA PF05368.13 gi|89256723|ref|YP_514085.1| - 3.1e-05 23.6 0.1 0.015 14.9 0.0 2.4 2 0 0 2 2 2 2 NmrA-like family CodY PF06018.14 gi|89256723|ref|YP_514085.1| - 0.036 13.5 0.0 0.076 12.5 0.0 1.5 1 0 0 1 1 1 0 CodY GAF-like domain UDPG_MGDP_dh_N PF03721.14 gi|89256723|ref|YP_514085.1| - 0.037 13.6 0.1 0.099 12.2 0.1 1.7 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Bac_transf PF02397.16 gi|89256724|ref|YP_514086.1| - 1.4e-62 210.6 0.5 1.4e-62 210.6 0.5 1.8 2 0 0 2 2 2 1 Bacterial sugar transferase CoA_binding_3 PF13727.6 gi|89256724|ref|YP_514086.1| - 0.011 15.8 4.3 0.011 15.8 4.3 2.2 1 1 1 2 2 2 0 CoA-binding domain Gaa1 PF04114.14 gi|89256724|ref|YP_514086.1| - 3.4 6.6 10.3 3.9 6.4 7.2 2.0 2 0 0 2 2 2 0 Gaa1-like, GPI transamidase component Ribul_P_3_epim PF00834.19 gi|89256725|ref|YP_514087.1| - 1.7e-79 265.8 0.1 2e-79 265.6 0.1 1.0 1 0 0 1 1 1 1 Ribulose-phosphate 3 epimerase family QRPTase_C PF01729.19 gi|89256725|ref|YP_514087.1| - 1.5e-05 24.9 0.0 0.0013 18.6 0.0 2.2 2 0 0 2 2 2 1 Quinolinate phosphoribosyl transferase, C-terminal domain KDGP_aldolase PF07071.11 gi|89256725|ref|YP_514087.1| - 0.0052 16.6 0.1 0.17 11.7 0.0 2.1 1 1 1 2 2 2 1 KDGP aldolase CutC PF03932.14 gi|89256725|ref|YP_514087.1| - 0.013 15.0 0.1 3.4 7.1 0.0 2.1 1 1 0 2 2 2 0 CutC family His_biosynth PF00977.21 gi|89256725|ref|YP_514087.1| - 0.026 14.0 0.1 0.33 10.4 0.0 2.3 1 1 1 2 2 2 0 Histidine biosynthesis protein SIS PF01380.22 gi|89256726|ref|YP_514088.1| - 8.2e-30 103.3 0.1 1.9e-29 102.2 0.1 1.6 1 0 0 1 1 1 1 SIS domain CBS PF00571.28 gi|89256726|ref|YP_514088.1| - 6.3e-19 68.2 3.1 5.9e-10 39.4 0.1 3.8 4 0 0 4 4 4 2 CBS domain SIS_2 PF13580.6 gi|89256726|ref|YP_514088.1| - 2.4e-07 30.9 1.6 0.00077 19.5 0.1 2.6 2 1 1 3 3 3 2 SIS domain DoxX PF07681.12 gi|89256727|ref|YP_514089.1| - 2.2e-14 53.8 9.4 2.2e-14 53.8 9.4 1.5 2 0 0 2 2 2 1 DoxX SUV3_C PF12513.8 gi|89256727|ref|YP_514089.1| - 0.057 13.3 0.0 0.12 12.4 0.0 1.5 1 0 0 1 1 1 0 Mitochondrial degradasome RNA helicase subunit C terminal DUF4118 PF13493.6 gi|89256727|ref|YP_514089.1| - 0.41 10.4 5.4 0.073 12.9 1.3 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4118) Pathogen_betaC1 PF09593.10 gi|89256728|ref|YP_514090.1| - 0.026 14.4 0.6 0.045 13.7 0.4 1.6 1 1 0 1 1 1 0 Beta-satellite pathogenicity beta C1 protein DUF2063 PF09836.9 gi|89256729|ref|YP_514091.1| - 1.6e-07 31.4 0.1 2.1e-07 31.1 0.1 1.1 1 0 0 1 1 1 1 Putative DNA-binding domain Ribosomal_L18A PF01775.17 gi|89256729|ref|YP_514091.1| - 0.083 13.0 0.1 0.1 12.7 0.1 1.3 1 1 0 1 1 1 0 Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A DUF692 PF05114.13 gi|89256730|ref|YP_514092.1| - 1e-89 300.3 0.0 1.1e-89 300.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF692) DUF4867 PF16161.5 gi|89256730|ref|YP_514092.1| - 0.045 13.2 0.3 0.071 12.6 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4867) HP0268 PF18618.1 gi|89256730|ref|YP_514092.1| - 0.47 10.9 3.6 2.1 8.9 0.1 2.5 2 0 0 2 2 2 0 HP0268 Lactamase_B PF00753.27 gi|89256733|ref|YP_514095.1| - 3.5e-05 23.9 0.1 4.9e-05 23.4 0.1 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|89256733|ref|YP_514095.1| - 0.00017 21.2 0.0 0.00021 20.8 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain DDE_Tnp_1_2 PF13586.6 gi|89256734|ref|YP_514096.1| - 1.2e-13 51.2 0.0 2.1e-13 50.4 0.0 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|89256734|ref|YP_514096.1| - 5.5e-12 45.8 2.0 4.8e-11 42.7 2.0 2.0 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 gi|89256734|ref|YP_514096.1| - 8.2e-08 32.4 0.0 1.2e-07 31.9 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF4096 PF13340.6 gi|89256734|ref|YP_514096.1| - 0.0064 16.7 0.0 0.013 15.8 0.0 1.5 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) adh_short_C2 PF13561.6 gi|89256735|ref|YP_514097.1| - 4.5e-80 268.6 1.4 5.1e-80 268.4 1.4 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|89256735|ref|YP_514097.1| - 1.3e-14 54.2 0.2 1.8e-14 53.6 0.2 1.3 1 0 0 1 1 1 1 short chain dehydrogenase Enoyl_reductase PF12241.8 gi|89256735|ref|YP_514097.1| - 0.00037 19.9 0.2 0.0044 16.4 0.2 2.2 3 0 0 3 3 3 1 Trans-2-enoyl-CoA reductase catalytic region Polysacc_synt_2 PF02719.15 gi|89256735|ref|YP_514097.1| - 0.041 13.0 0.7 0.077 12.1 0.8 1.4 2 0 0 2 2 2 0 Polysaccharide biosynthesis protein Lysine_decarbox PF03641.14 gi|89256736|ref|YP_514098.1| - 8.5e-33 113.3 0.0 2.8e-32 111.6 0.1 1.7 2 0 0 2 2 2 1 Possible lysine decarboxylase LDcluster4 PF18306.1 gi|89256736|ref|YP_514098.1| - 4.6e-14 52.3 0.0 6.1e-14 51.9 0.0 1.2 1 0 0 1 1 1 1 SLOG cluster4 family DNA_processg_A PF02481.15 gi|89256736|ref|YP_514098.1| - 0.0036 16.6 0.0 0.0054 16.0 0.0 1.3 1 0 0 1 1 1 1 DNA recombination-mediator protein A DUF4386 PF14329.6 gi|89256737|ref|YP_514099.1| - 0.1 12.5 3.8 0.16 11.9 3.7 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4386) DDE_Tnp_1_2 PF13586.6 gi|89256738|ref|YP_514100.1| - 1.7e-13 50.7 0.0 3.2e-13 49.9 0.0 1.5 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|89256738|ref|YP_514100.1| - 9.7e-12 45.0 1.9 7.6e-11 42.1 1.9 1.9 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 gi|89256738|ref|YP_514100.1| - 1.3e-07 31.8 0.0 1.9e-07 31.3 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF4096 PF13340.6 gi|89256738|ref|YP_514100.1| - 0.0087 16.3 0.0 0.016 15.4 0.0 1.5 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) DDE_3 PF13358.6 gi|89256739|ref|YP_514101.1| - 8.4e-29 100.2 0.1 3e-28 98.4 0.0 1.8 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_29 PF13551.6 gi|89256739|ref|YP_514101.1| - 0.003 17.6 0.0 0.0073 16.3 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn helix HTH_Tnp_IS630 PF01710.16 gi|89256739|ref|YP_514101.1| - 0.0033 17.5 1.8 0.0082 16.2 0.8 2.2 2 1 0 2 2 2 1 Transposase HTH_40 PF14493.6 gi|89256739|ref|YP_514101.1| - 0.015 15.8 0.0 0.061 13.8 0.0 2.0 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_28 PF13518.6 gi|89256739|ref|YP_514101.1| - 0.023 14.8 0.0 0.066 13.3 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain CENP-B_N PF04218.13 gi|89256739|ref|YP_514101.1| - 0.082 12.6 0.0 0.9 9.2 0.0 2.5 3 0 0 3 3 3 0 CENP-B N-terminal DNA-binding domain HTH_23 PF13384.6 gi|89256739|ref|YP_514101.1| - 0.1 12.4 0.0 0.31 10.9 0.0 1.9 1 0 0 1 1 1 0 Homeodomain-like domain rve PF00665.26 gi|89256739|ref|YP_514101.1| - 0.14 12.4 0.0 0.24 11.6 0.0 1.4 1 0 0 1 1 1 0 Integrase core domain UvrC_HhH_N PF08459.11 gi|89256741|ref|YP_514103.1| - 2.4e-42 144.5 1.2 7e-42 143.0 0.4 2.1 2 0 0 2 2 2 1 UvrC Helix-hairpin-helix N-terminal GIY-YIG PF01541.24 gi|89256741|ref|YP_514103.1| - 3.5e-15 56.0 3.3 4.4e-15 55.7 1.1 2.3 2 0 0 2 2 2 1 GIY-YIG catalytic domain UVR PF02151.19 gi|89256741|ref|YP_514103.1| - 3.9e-09 36.0 2.2 1.1e-08 34.6 0.8 2.4 2 0 0 2 2 2 1 UvrB/uvrC motif HHH_5 PF14520.6 gi|89256741|ref|YP_514103.1| - 3.7e-08 33.8 0.0 9.6e-08 32.5 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH_2 PF12826.7 gi|89256741|ref|YP_514103.1| - 2.3e-07 30.8 0.0 6.8e-07 29.3 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH PF00633.23 gi|89256741|ref|YP_514103.1| - 2.8e-06 26.9 0.1 0.0016 18.2 0.0 2.6 2 0 0 2 2 2 2 Helix-hairpin-helix motif DUF4709 PF15821.5 gi|89256741|ref|YP_514103.1| - 0.0065 16.7 1.8 0.021 15.1 1.8 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF4709) HHH_3 PF12836.7 gi|89256741|ref|YP_514103.1| - 0.015 15.6 0.0 0.058 13.7 0.0 2.1 2 0 0 2 2 2 0 Helix-hairpin-helix motif CagX PF03524.15 gi|89256741|ref|YP_514103.1| - 0.05 13.3 0.0 0.15 11.8 0.0 1.8 2 0 0 2 2 2 0 Conjugal transfer protein 5_3_exonuc PF01367.20 gi|89256741|ref|YP_514103.1| - 1.1 9.9 3.9 6.4 7.5 0.0 3.7 4 1 0 4 4 4 0 5'-3' exonuclease, C-terminal SAM fold DNA_pol_A_exo1 PF01612.20 gi|89256742|ref|YP_514104.1| - 3.3e-44 150.7 5.5 5.8e-44 149.9 5.5 1.4 1 0 0 1 1 1 1 3'-5' exonuclease HRDC PF00570.23 gi|89256742|ref|YP_514104.1| - 1.4e-08 34.6 0.0 3.9e-08 33.2 0.0 1.7 1 0 0 1 1 1 1 HRDC domain MFS_1 PF07690.16 gi|89256743|ref|YP_514105.1| - 3.7e-39 134.6 34.0 6e-39 133.9 34.0 1.3 1 0 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|89256743|ref|YP_514105.1| - 4.8e-11 42.2 11.8 4.8e-11 42.2 11.8 2.6 1 1 0 2 2 2 1 Sugar (and other) transporter MFS_2 PF13347.6 gi|89256743|ref|YP_514105.1| - 3.5e-06 25.8 35.1 0.0027 16.3 20.9 2.1 1 1 1 2 2 2 2 MFS/sugar transport protein DUF2237 PF09996.9 gi|89256744|ref|YP_514106.1| - 8.8e-53 177.2 0.0 1e-52 177.0 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2237) Ribosomal_L27 PF01016.19 gi|89256745|ref|YP_514107.1| - 1.1e-38 131.0 1.9 1.3e-38 130.9 1.9 1.0 1 0 0 1 1 1 1 Ribosomal L27 protein Ribosomal_L21p PF00829.21 gi|89256746|ref|YP_514108.1| - 6.4e-36 122.7 7.3 7e-36 122.5 7.3 1.0 1 0 0 1 1 1 1 Ribosomal prokaryotic L21 protein SecA_DEAD PF07517.14 gi|89256747|ref|YP_514109.1| - 2.3e-134 447.2 4.3 4.7e-134 446.2 4.3 1.5 1 0 0 1 1 1 1 SecA DEAD-like domain SecA_SW PF07516.13 gi|89256747|ref|YP_514109.1| - 5.5e-58 196.3 5.0 5.5e-58 196.3 5.0 2.9 2 0 0 2 2 2 1 SecA Wing and Scaffold domain SecA_PP_bind PF01043.20 gi|89256747|ref|YP_514109.1| - 3.9e-36 124.1 0.7 3.9e-36 124.1 0.7 2.4 2 0 0 2 2 2 1 SecA preprotein cross-linking domain SEC-C PF02810.15 gi|89256747|ref|YP_514109.1| - 1.2e-10 41.1 10.2 1.9e-10 40.5 10.2 1.3 1 0 0 1 1 1 1 SEC-C motif DEAD PF00270.29 gi|89256747|ref|YP_514109.1| - 8.3e-06 25.7 0.0 3.7e-05 23.6 0.0 2.1 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|89256747|ref|YP_514109.1| - 0.011 16.0 2.4 0.034 14.5 0.1 2.7 2 0 0 2 2 2 0 Helicase conserved C-terminal domain ResIII PF04851.15 gi|89256747|ref|YP_514109.1| - 0.31 11.0 0.0 0.31 11.0 0.0 3.6 3 1 0 3 3 3 0 Type III restriction enzyme, res subunit LPP20 PF02169.16 gi|89256748|ref|YP_514110.1| - 2e-17 63.3 5.0 2e-17 63.3 5.0 3.0 2 1 0 3 3 3 1 LPP20 lipoprotein Baculo_LEF-2 PF03041.14 gi|89256748|ref|YP_514110.1| - 0.041 13.5 0.5 0.093 12.4 0.5 1.6 1 0 0 1 1 1 0 lef-2 MADF_DNA_bdg PF10545.9 gi|89256749|ref|YP_514111.1| - 0.035 14.4 5.0 1.3 9.4 0.1 2.8 2 2 0 3 3 3 0 Alcohol dehydrogenase transcription factor Myb/SANT-like Ppx-GppA PF02541.16 gi|89256749|ref|YP_514111.1| - 0.042 13.3 1.4 0.045 13.2 0.2 1.6 2 0 0 2 2 2 0 Ppx/GppA phosphatase family DUF2120 PF09893.9 gi|89256749|ref|YP_514111.1| - 0.093 12.8 1.4 0.15 12.1 1.4 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2120) Mating_N PF12731.7 gi|89256749|ref|YP_514111.1| - 0.27 11.3 2.6 11 6.2 0.1 2.6 3 0 0 3 3 3 0 Mating-type protein beta 1 zf-CRD PF17979.1 gi|89256749|ref|YP_514111.1| - 0.31 11.1 4.2 0.23 11.6 2.4 1.6 1 1 1 2 2 2 0 Cysteine rich domain with multizinc binding regions PNP_UDP_1 PF01048.20 gi|89256750|ref|YP_514112.1| - 1.2e-35 122.9 0.1 1.4e-35 122.7 0.1 1.1 1 0 0 1 1 1 1 Phosphorylase superfamily DDE_3 PF13358.6 gi|89256751|ref|YP_514113.1| - 9.9e-30 103.2 0.2 3.2e-29 101.6 0.0 1.8 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.16 gi|89256751|ref|YP_514113.1| - 0.0029 17.6 1.5 0.0084 16.2 0.6 2.3 2 1 0 2 2 2 1 Transposase HTH_29 PF13551.6 gi|89256751|ref|YP_514113.1| - 0.0033 17.4 0.0 0.008 16.2 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn helix HTH_40 PF14493.6 gi|89256751|ref|YP_514113.1| - 0.011 16.2 0.1 0.069 13.6 0.0 2.3 3 1 0 3 3 3 0 Helix-turn-helix domain HTH_28 PF13518.6 gi|89256751|ref|YP_514113.1| - 0.026 14.6 0.0 0.073 13.2 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain CENP-B_N PF04218.13 gi|89256751|ref|YP_514113.1| - 0.097 12.3 0.0 0.98 9.1 0.0 2.5 3 0 0 3 3 3 0 CENP-B N-terminal DNA-binding domain HTH_23 PF13384.6 gi|89256751|ref|YP_514113.1| - 0.12 12.2 0.0 0.34 10.8 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain rve PF00665.26 gi|89256751|ref|YP_514113.1| - 0.15 12.3 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 Integrase core domain DDE_Tnp_ISAZ013 PF07592.11 gi|89256751|ref|YP_514113.1| - 0.17 10.9 0.3 1.1 8.1 0.1 2.0 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain DDE_Tnp_1_2 PF13586.6 gi|89256752|ref|YP_514114.1| - 1e-13 51.4 0.0 1.8e-13 50.6 0.0 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|89256752|ref|YP_514114.1| - 4.3e-12 46.2 2.0 3.9e-11 43.0 2.0 1.9 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 gi|89256752|ref|YP_514114.1| - 7e-08 32.6 0.0 9.8e-08 32.2 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.6 gi|89256752|ref|YP_514114.1| - 0.00018 21.2 0.2 0.00024 20.8 0.2 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease DUF4096 PF13340.6 gi|89256752|ref|YP_514114.1| - 0.0057 16.8 0.0 0.011 15.9 0.0 1.5 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) Peptidase_M41 PF01434.18 gi|89256753|ref|YP_514115.1| - 4e-64 216.0 0.0 7.5e-64 215.1 0.0 1.5 1 0 0 1 1 1 1 Peptidase family M41 AAA PF00004.29 gi|89256753|ref|YP_514115.1| - 3e-45 153.9 0.0 6.2e-45 152.9 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) FtsH_ext PF06480.15 gi|89256753|ref|YP_514115.1| - 2.1e-14 53.8 1.1 2.1e-14 53.8 1.1 1.9 2 0 0 2 2 2 1 FtsH Extracellular AAA_lid_3 PF17862.1 gi|89256753|ref|YP_514115.1| - 3.4e-14 52.4 0.1 6.7e-14 51.4 0.1 1.5 1 0 0 1 1 1 1 AAA+ lid domain TIP49 PF06068.13 gi|89256753|ref|YP_514115.1| - 1.8e-06 27.4 0.0 3.4e-06 26.5 0.0 1.4 1 0 0 1 1 1 1 TIP49 P-loop domain AAA_5 PF07728.14 gi|89256753|ref|YP_514115.1| - 0.00013 21.9 0.1 0.00083 19.4 0.1 2.2 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) RuvB_N PF05496.12 gi|89256753|ref|YP_514115.1| - 0.00038 20.2 0.0 0.002 17.9 0.0 2.2 3 0 0 3 3 3 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|89256753|ref|YP_514115.1| - 0.0015 18.9 0.1 0.03 14.7 0.1 2.5 1 1 0 2 2 2 1 AAA ATPase domain IstB_IS21 PF01695.17 gi|89256753|ref|YP_514115.1| - 0.0024 17.6 0.0 0.0052 16.5 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein Mg_chelatase PF01078.21 gi|89256753|ref|YP_514115.1| - 0.0037 16.7 1.4 0.013 14.9 0.3 2.1 1 1 1 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_33 PF13671.6 gi|89256753|ref|YP_514115.1| - 0.0047 17.1 0.0 0.0093 16.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|89256753|ref|YP_514115.1| - 0.01 16.1 0.7 0.15 12.3 0.1 2.6 2 1 0 2 2 1 0 AAA domain CSTF2_hinge PF14327.6 gi|89256753|ref|YP_514115.1| - 0.012 16.0 0.3 0.025 15.0 0.3 1.5 1 0 0 1 1 1 0 Hinge domain of cleavage stimulation factor subunit 2 AAA_2 PF07724.14 gi|89256753|ref|YP_514115.1| - 0.028 14.6 0.1 0.18 11.9 0.0 2.5 2 0 0 2 2 2 0 AAA domain (Cdc48 subfamily) AAA_17 PF13207.6 gi|89256753|ref|YP_514115.1| - 0.031 14.7 0.1 0.12 12.7 0.0 2.2 2 1 0 2 2 1 0 AAA domain Zeta_toxin PF06414.12 gi|89256753|ref|YP_514115.1| - 0.041 13.1 0.1 0.096 11.9 0.1 1.6 1 0 0 1 1 1 0 Zeta toxin AAA_14 PF13173.6 gi|89256753|ref|YP_514115.1| - 0.07 13.2 0.0 0.29 11.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain Sigma54_activat PF00158.26 gi|89256753|ref|YP_514115.1| - 0.079 12.7 0.0 0.21 11.3 0.0 1.8 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_7 PF12775.7 gi|89256753|ref|YP_514115.1| - 0.094 12.2 0.5 0.39 10.2 0.1 2.2 2 1 0 2 2 2 0 P-loop containing dynein motor region PhoH PF02562.16 gi|89256753|ref|YP_514115.1| - 0.12 11.9 0.9 0.22 10.9 0.2 1.8 2 0 0 2 2 2 0 PhoH-like protein Sigma54_activ_2 PF14532.6 gi|89256753|ref|YP_514115.1| - 0.16 12.1 0.0 2.5 8.2 0.0 2.4 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_28 PF13521.6 gi|89256753|ref|YP_514115.1| - 0.17 12.1 0.0 0.41 10.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain MFS_1 PF07690.16 gi|89256754|ref|YP_514116.1| - 0.0014 17.7 0.5 0.0015 17.5 0.5 1.0 1 0 0 1 1 1 1 Major Facilitator Superfamily WaaY PF06176.11 gi|89256754|ref|YP_514116.1| - 0.028 14.1 0.0 0.028 14.1 0.0 1.1 1 0 0 1 1 1 0 Lipopolysaccharide core biosynthesis protein (WaaY) MFS_1 PF07690.16 gi|89256755|ref|YP_514117.1| - 2.4e-19 69.5 11.9 2.8e-19 69.3 11.9 1.0 1 0 0 1 1 1 1 Major Facilitator Superfamily PhoR PF11808.8 gi|89256755|ref|YP_514117.1| - 0.3 11.5 0.3 0.3 11.5 0.3 2.6 2 1 1 3 3 3 0 Phosphate regulon sensor protein PhoR TRI12 PF06609.13 gi|89256755|ref|YP_514117.1| - 0.33 9.3 8.3 0.19 10.1 6.0 1.8 1 1 1 2 2 2 0 Fungal trichothecene efflux pump (TRI12) DUF485 PF04341.12 gi|89256755|ref|YP_514117.1| - 1.7 8.7 0.0 1.7 8.7 0.0 2.7 3 1 0 3 3 3 0 Protein of unknown function, DUF485 DDE_Tnp_1_2 PF13586.6 gi|89256756|ref|YP_514118.1| - 1e-13 51.4 0.0 1.8e-13 50.6 0.0 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|89256756|ref|YP_514118.1| - 4.3e-12 46.2 2.0 3.9e-11 43.0 2.0 1.9 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 gi|89256756|ref|YP_514118.1| - 7e-08 32.6 0.0 9.8e-08 32.2 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.6 gi|89256756|ref|YP_514118.1| - 0.00018 21.2 0.2 0.00024 20.8 0.2 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease DUF4096 PF13340.6 gi|89256756|ref|YP_514118.1| - 0.0057 16.8 0.0 0.011 15.9 0.0 1.5 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) Peptidase_M41 PF01434.18 gi|89256757|ref|YP_514119.1| - 4e-64 216.0 0.0 7.5e-64 215.1 0.0 1.5 1 0 0 1 1 1 1 Peptidase family M41 AAA PF00004.29 gi|89256757|ref|YP_514119.1| - 3e-45 153.9 0.0 6.2e-45 152.9 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) FtsH_ext PF06480.15 gi|89256757|ref|YP_514119.1| - 2.1e-14 53.8 1.1 2.1e-14 53.8 1.1 1.9 2 0 0 2 2 2 1 FtsH Extracellular AAA_lid_3 PF17862.1 gi|89256757|ref|YP_514119.1| - 3.4e-14 52.4 0.1 6.7e-14 51.4 0.1 1.5 1 0 0 1 1 1 1 AAA+ lid domain TIP49 PF06068.13 gi|89256757|ref|YP_514119.1| - 1.8e-06 27.4 0.0 3.4e-06 26.5 0.0 1.4 1 0 0 1 1 1 1 TIP49 P-loop domain AAA_5 PF07728.14 gi|89256757|ref|YP_514119.1| - 0.00013 21.9 0.1 0.00083 19.4 0.1 2.2 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) RuvB_N PF05496.12 gi|89256757|ref|YP_514119.1| - 0.00038 20.2 0.0 0.002 17.9 0.0 2.2 3 0 0 3 3 3 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|89256757|ref|YP_514119.1| - 0.0015 18.9 0.1 0.03 14.7 0.1 2.5 1 1 0 2 2 2 1 AAA ATPase domain IstB_IS21 PF01695.17 gi|89256757|ref|YP_514119.1| - 0.0024 17.6 0.0 0.0052 16.5 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein Mg_chelatase PF01078.21 gi|89256757|ref|YP_514119.1| - 0.0037 16.7 1.4 0.013 14.9 0.3 2.1 1 1 1 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_33 PF13671.6 gi|89256757|ref|YP_514119.1| - 0.0047 17.1 0.0 0.0093 16.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|89256757|ref|YP_514119.1| - 0.01 16.1 0.7 0.15 12.3 0.1 2.6 2 1 0 2 2 1 0 AAA domain CSTF2_hinge PF14327.6 gi|89256757|ref|YP_514119.1| - 0.012 16.0 0.3 0.025 15.0 0.3 1.5 1 0 0 1 1 1 0 Hinge domain of cleavage stimulation factor subunit 2 AAA_2 PF07724.14 gi|89256757|ref|YP_514119.1| - 0.028 14.6 0.1 0.18 11.9 0.0 2.5 2 0 0 2 2 2 0 AAA domain (Cdc48 subfamily) AAA_17 PF13207.6 gi|89256757|ref|YP_514119.1| - 0.031 14.7 0.1 0.12 12.7 0.0 2.2 2 1 0 2 2 1 0 AAA domain Zeta_toxin PF06414.12 gi|89256757|ref|YP_514119.1| - 0.041 13.1 0.1 0.096 11.9 0.1 1.6 1 0 0 1 1 1 0 Zeta toxin AAA_14 PF13173.6 gi|89256757|ref|YP_514119.1| - 0.07 13.2 0.0 0.29 11.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain Sigma54_activat PF00158.26 gi|89256757|ref|YP_514119.1| - 0.079 12.7 0.0 0.21 11.3 0.0 1.8 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_7 PF12775.7 gi|89256757|ref|YP_514119.1| - 0.094 12.2 0.5 0.39 10.2 0.1 2.2 2 1 0 2 2 2 0 P-loop containing dynein motor region PhoH PF02562.16 gi|89256757|ref|YP_514119.1| - 0.12 11.9 0.9 0.22 10.9 0.2 1.8 2 0 0 2 2 2 0 PhoH-like protein Sigma54_activ_2 PF14532.6 gi|89256757|ref|YP_514119.1| - 0.16 12.1 0.0 2.5 8.2 0.0 2.4 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_28 PF13521.6 gi|89256757|ref|YP_514119.1| - 0.17 12.1 0.0 0.41 10.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain MFS_1 PF07690.16 gi|89256758|ref|YP_514120.1| - 0.0014 17.7 0.5 0.0015 17.5 0.5 1.0 1 0 0 1 1 1 1 Major Facilitator Superfamily WaaY PF06176.11 gi|89256758|ref|YP_514120.1| - 0.028 14.1 0.0 0.028 14.1 0.0 1.1 1 0 0 1 1 1 0 Lipopolysaccharide core biosynthesis protein (WaaY) MFS_1 PF07690.16 gi|89256759|ref|YP_514121.1| - 2.4e-19 69.5 11.9 2.8e-19 69.3 11.9 1.0 1 0 0 1 1 1 1 Major Facilitator Superfamily PhoR PF11808.8 gi|89256759|ref|YP_514121.1| - 0.3 11.5 0.3 0.3 11.5 0.3 2.6 2 1 1 3 3 3 0 Phosphate regulon sensor protein PhoR TRI12 PF06609.13 gi|89256759|ref|YP_514121.1| - 0.33 9.3 8.3 0.19 10.1 6.0 1.8 1 1 1 2 2 2 0 Fungal trichothecene efflux pump (TRI12) DUF485 PF04341.12 gi|89256759|ref|YP_514121.1| - 1.7 8.7 0.0 1.7 8.7 0.0 2.7 3 1 0 3 3 3 0 Protein of unknown function, DUF485 DDE_Tnp_1_2 PF13586.6 gi|89256760|ref|YP_514122.1| - 1.1e-13 51.4 0.0 1.9e-13 50.6 0.0 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|89256760|ref|YP_514122.1| - 4.5e-12 46.1 2.0 4.1e-11 42.9 2.0 1.9 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 gi|89256760|ref|YP_514122.1| - 7.2e-08 32.6 0.0 1e-07 32.1 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.6 gi|89256760|ref|YP_514122.1| - 0.00018 21.2 0.2 0.00025 20.8 0.2 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease DUF4096 PF13340.6 gi|89256760|ref|YP_514122.1| - 0.0058 16.8 0.0 0.012 15.9 0.0 1.5 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) Phage_r1t_holin PF16945.5 gi|89256761|ref|YP_514123.1| - 0.076 13.2 0.3 0.15 12.3 0.3 1.4 1 0 0 1 1 1 0 Putative lactococcus lactis phage r1t holin Tetraspanin PF00335.20 gi|89256761|ref|YP_514123.1| - 0.93 9.2 13.8 1.2 8.8 13.8 1.0 1 0 0 1 1 1 0 Tetraspanin family UvrA_inter PF17760.1 gi|89256762|ref|YP_514124.1| - 8e-40 135.3 1.0 5.8e-39 132.5 0.4 2.5 2 0 0 2 2 2 1 UvrA interaction domain UvrA_DNA-bind PF17755.1 gi|89256762|ref|YP_514124.1| - 7.5e-34 116.4 0.1 2.9e-32 111.3 0.1 3.0 3 0 0 3 3 3 1 UvrA DNA-binding domain ABC_tran PF00005.27 gi|89256762|ref|YP_514124.1| - 8.3e-21 74.9 0.2 2.3e-05 24.9 0.0 4.6 4 0 0 4 4 4 4 ABC transporter SMC_N PF02463.19 gi|89256762|ref|YP_514124.1| - 1.4e-12 47.5 0.0 0.037 13.5 0.0 4.8 4 1 0 5 5 5 4 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|89256762|ref|YP_514124.1| - 2.3e-08 33.7 0.2 0.0042 16.8 0.1 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|89256762|ref|YP_514124.1| - 1.3e-06 28.9 0.1 0.11 12.8 0.0 3.0 3 0 0 3 3 2 2 AAA ATPase domain RsgA_GTPase PF03193.16 gi|89256762|ref|YP_514124.1| - 5.1e-06 26.5 0.3 0.12 12.3 0.1 2.5 2 0 0 2 2 2 2 RsgA GTPase AAA_22 PF13401.6 gi|89256762|ref|YP_514124.1| - 1.6e-05 25.2 0.0 0.17 12.1 0.0 3.4 3 0 0 3 3 3 2 AAA domain DnaJ_CXXCXGXG PF00684.19 gi|89256762|ref|YP_514124.1| - 9.2e-05 22.7 2.8 0.036 14.4 0.4 3.7 4 0 0 4 4 4 1 DnaJ central domain AAA_33 PF13671.6 gi|89256762|ref|YP_514124.1| - 9.2e-05 22.6 0.0 0.3 11.2 0.0 3.5 3 0 0 3 3 3 2 AAA domain AAA_21 PF13304.6 gi|89256762|ref|YP_514124.1| - 0.00031 20.7 6.7 0.084 12.7 0.0 4.2 4 0 0 4 4 4 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_18 PF13238.6 gi|89256762|ref|YP_514124.1| - 0.00052 20.6 0.2 2.1 8.9 0.0 3.9 4 0 0 4 4 4 1 AAA domain AAA_25 PF13481.6 gi|89256762|ref|YP_514124.1| - 0.00078 19.1 1.2 0.57 9.7 0.0 3.0 3 0 0 3 3 3 2 AAA domain AAA_23 PF13476.6 gi|89256762|ref|YP_514124.1| - 0.00091 19.8 8.4 0.03 14.8 0.2 3.1 4 0 0 4 4 2 2 AAA domain AAA_15 PF13175.6 gi|89256762|ref|YP_514124.1| - 0.0011 18.8 4.5 4.3 6.9 0.6 4.5 4 1 0 4 4 4 1 AAA ATPase domain cobW PF02492.19 gi|89256762|ref|YP_514124.1| - 0.0012 18.5 0.5 0.21 11.1 0.1 2.6 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain ATPase PF06745.13 gi|89256762|ref|YP_514124.1| - 0.0015 18.0 0.0 2.1 7.6 0.0 3.2 3 0 0 3 3 3 2 KaiC Viral_helicase1 PF01443.18 gi|89256762|ref|YP_514124.1| - 0.0046 16.7 0.0 0.16 11.7 0.0 2.8 3 0 0 3 3 2 1 Viral (Superfamily 1) RNA helicase APS_kinase PF01583.20 gi|89256762|ref|YP_514124.1| - 0.0055 16.6 0.3 3.2 7.6 0.0 3.2 3 0 0 3 3 2 1 Adenylylsulphate kinase DUF2075 PF09848.9 gi|89256762|ref|YP_514124.1| - 0.0068 15.7 0.0 3.9 6.6 0.0 2.5 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) NACHT PF05729.12 gi|89256762|ref|YP_514124.1| - 0.008 16.1 0.0 0.65 9.9 0.0 2.4 2 0 0 2 2 2 1 NACHT domain Glu_synthase PF01645.17 gi|89256762|ref|YP_514124.1| - 0.017 14.3 0.0 0.03 13.5 0.0 1.3 1 0 0 1 1 1 0 Conserved region in glutamate synthase AAA_30 PF13604.6 gi|89256762|ref|YP_514124.1| - 0.023 14.4 0.0 11 5.7 0.0 3.2 3 0 0 3 3 3 0 AAA domain NTPase_1 PF03266.15 gi|89256762|ref|YP_514124.1| - 0.028 14.3 1.6 2.1 8.2 0.0 3.4 3 0 0 3 3 3 0 NTPase AAA_24 PF13479.6 gi|89256762|ref|YP_514124.1| - 0.04 13.6 0.5 8.7 6.0 0.0 3.3 3 0 0 3 3 3 0 AAA domain MeaB PF03308.16 gi|89256762|ref|YP_514124.1| - 0.062 12.3 0.0 1.4 7.8 0.0 2.9 3 0 0 3 3 3 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_7 PF12775.7 gi|89256762|ref|YP_514124.1| - 0.064 12.8 0.1 12 5.4 0.0 2.8 3 0 0 3 3 3 0 P-loop containing dynein motor region MMR_HSR1 PF01926.23 gi|89256762|ref|YP_514124.1| - 0.081 13.0 0.8 2.6 8.2 0.1 2.9 3 0 0 3 3 2 0 50S ribosome-binding GTPase RNA_helicase PF00910.22 gi|89256762|ref|YP_514124.1| - 0.088 13.2 0.1 28 5.2 0.0 3.5 3 0 0 3 3 3 0 RNA helicase GreA_GreB_N PF03449.15 gi|89256763|ref|YP_514125.1| - 4.1e-31 106.9 2.1 4.1e-31 106.9 2.1 1.5 2 0 0 2 2 2 1 Transcription elongation factor, N-terminal GreA_GreB PF01272.19 gi|89256763|ref|YP_514125.1| - 1e-29 102.2 1.4 1.8e-29 101.5 1.4 1.3 1 0 0 1 1 1 1 Transcription elongation factor, GreA/GreB, C-term DUF1161 PF06649.12 gi|89256763|ref|YP_514125.1| - 0.063 13.5 0.9 0.2 11.9 0.6 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1161) Myosin_N PF02736.19 gi|89256763|ref|YP_514125.1| - 0.17 11.8 2.0 0.24 11.3 0.2 2.1 2 0 0 2 2 2 0 Myosin N-terminal SH3-like domain N_methyl PF07963.12 gi|89256764|ref|YP_514126.1| - 2.6e-08 33.1 3.4 4.3e-08 32.4 3.4 1.4 1 0 0 1 1 1 1 Prokaryotic N-terminal methylation motif GspH PF12019.8 gi|89256764|ref|YP_514126.1| - 0.00034 21.0 0.0 0.00049 20.5 0.0 1.2 1 0 0 1 1 1 1 Type II transport protein GspH GNAT_acetyltran PF12746.7 gi|89256764|ref|YP_514126.1| - 0.15 11.6 0.0 0.29 10.7 0.0 1.5 1 0 0 1 1 1 0 GNAT acetyltransferase PGI PF00342.19 gi|89256765|ref|YP_514127.1| - 3.3e-198 659.2 0.9 3.8e-198 659.0 0.9 1.0 1 0 0 1 1 1 1 Phosphoglucose isomerase TPK_catalytic PF04263.16 gi|89256766|ref|YP_514128.1| - 4e-12 46.2 0.1 1.4e-11 44.5 0.1 1.8 1 1 0 1 1 1 1 Thiamin pyrophosphokinase, catalytic domain TPK_B1_binding PF04265.14 gi|89256766|ref|YP_514128.1| - 5.7e-05 22.8 0.0 8.3e-05 22.2 0.0 1.3 1 0 0 1 1 1 1 Thiamin pyrophosphokinase, vitamin B1 binding domain Het-C PF07217.11 gi|89256766|ref|YP_514128.1| - 0.0082 14.7 0.0 0.011 14.3 0.0 1.1 1 0 0 1 1 1 1 Heterokaryon incompatibility protein Het-C AAA_14 PF13173.6 gi|89256766|ref|YP_514128.1| - 0.074 13.1 0.5 0.11 12.5 0.5 1.4 1 0 0 1 1 1 0 AAA domain IMPDH PF00478.25 gi|89256767|ref|YP_514129.1| - 2.2e-165 549.8 9.7 2.5e-165 549.6 9.7 1.0 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain CBS PF00571.28 gi|89256767|ref|YP_514129.1| - 2e-24 85.8 1.6 8.1e-13 48.6 0.0 3.8 4 0 0 4 4 4 2 CBS domain NMO PF03060.15 gi|89256767|ref|YP_514129.1| - 2.8e-16 59.8 12.1 8.5e-11 41.8 8.6 2.2 2 0 0 2 2 2 2 Nitronate monooxygenase FMN_dh PF01070.18 gi|89256767|ref|YP_514129.1| - 4.3e-09 35.9 17.1 1.7e-08 33.9 15.8 2.5 2 1 0 2 2 2 1 FMN-dependent dehydrogenase His_biosynth PF00977.21 gi|89256767|ref|YP_514129.1| - 5.6e-05 22.7 6.5 0.025 14.0 0.5 2.9 3 0 0 3 3 3 2 Histidine biosynthesis protein Glu_synthase PF01645.17 gi|89256767|ref|YP_514129.1| - 0.00021 20.5 6.4 0.00021 20.5 6.4 1.7 2 0 0 2 2 2 1 Conserved region in glutamate synthase NanE PF04131.14 gi|89256767|ref|YP_514129.1| - 0.0008 18.6 4.6 0.0043 16.3 4.6 2.5 1 1 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase B12-binding PF02310.19 gi|89256767|ref|YP_514129.1| - 0.0042 17.1 0.7 0.0042 17.1 0.7 2.2 3 0 0 3 3 3 1 B12 binding domain TMP-TENI PF02581.17 gi|89256767|ref|YP_514129.1| - 0.011 15.0 6.3 0.34 10.2 3.2 2.4 2 0 0 2 2 2 0 Thiamine monophosphate synthase DHO_dh PF01180.21 gi|89256767|ref|YP_514129.1| - 0.015 14.6 3.7 0.015 14.6 3.7 2.8 2 1 1 3 3 3 0 Dihydroorotate dehydrogenase PyrI PF01948.18 gi|89256767|ref|YP_514129.1| - 0.016 15.5 0.3 0.063 13.5 0.1 2.1 2 0 0 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, allosteric domain PRC PF05239.16 gi|89256767|ref|YP_514129.1| - 0.035 14.2 0.0 4.9 7.3 0.0 2.8 2 0 0 2 2 2 0 PRC-barrel domain Response_reg PF00072.24 gi|89256767|ref|YP_514129.1| - 0.051 13.7 0.9 0.28 11.3 0.1 2.5 2 1 0 2 2 2 0 Response regulator receiver domain PcrB PF01884.17 gi|89256767|ref|YP_514129.1| - 0.21 11.0 9.9 0.23 10.9 0.9 3.3 2 1 0 3 3 3 0 PcrB family G3P_antiterm PF04309.12 gi|89256767|ref|YP_514129.1| - 1.2 8.6 7.6 3.5 7.0 0.6 3.1 3 0 0 3 3 3 0 Glycerol-3-phosphate responsive antiterminator ThiG PF05690.14 gi|89256767|ref|YP_514129.1| - 1.7 7.9 9.0 1 8.6 6.7 1.8 1 1 1 2 2 2 0 Thiazole biosynthesis protein ThiG Peptidase_M17 PF00883.21 gi|89256768|ref|YP_514130.1| - 6.6e-113 377.1 1.2 8.6e-113 376.7 1.2 1.1 1 0 0 1 1 1 1 Cytosol aminopeptidase family, catalytic domain Peptidase_M17_N PF02789.17 gi|89256768|ref|YP_514130.1| - 3.5e-12 46.3 0.1 8.4e-12 45.0 0.1 1.7 1 0 0 1 1 1 1 Cytosol aminopeptidase family, N-terminal domain LptF_LptG PF03739.14 gi|89256769|ref|YP_514131.1| - 2e-63 214.4 10.5 2.3e-63 214.2 10.5 1.0 1 0 0 1 1 1 1 Lipopolysaccharide export system permease LptF/LptG LptF_LptG PF03739.14 gi|89256770|ref|YP_514132.1| - 5.9e-48 163.5 19.9 6.9e-48 163.3 19.9 1.0 1 0 0 1 1 1 1 Lipopolysaccharide export system permease LptF/LptG FtsX PF02687.21 gi|89256770|ref|YP_514132.1| - 0.031 14.7 0.0 0.031 14.7 0.0 3.6 3 1 0 3 3 3 0 FtsX-like permease family DUF3939 PF13075.6 gi|89256770|ref|YP_514132.1| - 0.17 11.9 0.2 0.69 9.9 0.1 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3939) ATP_synt_H PF05493.13 gi|89256770|ref|YP_514132.1| - 8 7.0 9.0 0.21 12.1 0.6 2.6 3 0 0 3 3 3 0 ATP synthase subunit H Peptidase_M16 PF00675.20 gi|89256771|ref|YP_514133.1| - 2.4e-27 95.7 0.0 4.6e-27 94.8 0.0 1.4 1 0 0 1 1 1 1 Insulinase (Peptidase family M16) Peptidase_M16_C PF05193.21 gi|89256771|ref|YP_514133.1| - 1.7e-25 90.1 0.0 3.3e-25 89.1 0.0 1.5 1 0 0 1 1 1 1 Peptidase M16 inactive domain RTX_C PF08339.10 gi|89256771|ref|YP_514133.1| - 0.048 13.7 0.7 0.25 11.4 0.0 2.3 2 0 0 2 2 2 0 RTX C-terminal domain Peptidase_M16_C PF05193.21 gi|89256772|ref|YP_514134.1| - 8.9e-20 71.5 0.2 1.7e-19 70.5 0.2 1.4 1 0 0 1 1 1 1 Peptidase M16 inactive domain Peptidase_M16 PF00675.20 gi|89256772|ref|YP_514134.1| - 4.6e-14 52.7 0.2 3e-13 50.0 0.1 2.0 2 0 0 2 2 2 1 Insulinase (Peptidase family M16) Cons_hypoth95 PF03602.15 gi|89256773|ref|YP_514135.1| - 1e-46 158.9 0.0 1.1e-46 158.7 0.0 1.0 1 0 0 1 1 1 1 Conserved hypothetical protein 95 RsmJ PF04378.13 gi|89256773|ref|YP_514135.1| - 0.025 13.8 0.0 0.032 13.5 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA large subunit methyltransferase D, RlmJ UPF0126 PF03458.13 gi|89256774|ref|YP_514136.1| - 1.5e-34 117.7 20.4 6.9e-19 67.5 5.3 2.5 2 0 0 2 2 2 2 UPF0126 domain NPCC PF08058.11 gi|89256774|ref|YP_514136.1| - 0.49 10.4 2.9 0.98 9.5 2.8 1.6 1 1 0 1 1 1 0 Nuclear pore complex component DUF3094 PF11293.8 gi|89256774|ref|YP_514136.1| - 0.58 9.9 1.7 7.7 6.3 0.0 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3094) MiaE PF06175.11 gi|89256775|ref|YP_514137.1| - 8.5e-70 235.1 10.2 8.5e-56 189.2 3.4 2.0 1 1 1 2 2 2 2 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) DUF2202 PF09968.9 gi|89256775|ref|YP_514137.1| - 0.0017 18.2 0.6 0.0046 16.8 0.6 1.6 1 1 0 1 1 1 1 Uncharacterized protein domain (DUF2202) Rubrerythrin PF02915.17 gi|89256775|ref|YP_514137.1| - 0.0038 17.6 2.9 0.0047 17.3 1.7 1.7 1 1 1 2 2 2 2 Rubrerythrin DUF455 PF04305.14 gi|89256775|ref|YP_514137.1| - 0.0039 16.8 1.9 0.0085 15.7 1.8 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF455) PNP_UDP_1 PF01048.20 gi|89256776|ref|YP_514138.1| - 2.3e-38 131.8 0.0 2.9e-38 131.4 0.0 1.1 1 0 0 1 1 1 1 Phosphorylase superfamily dCMP_cyt_deam_1 PF00383.23 gi|89256777|ref|YP_514139.1| - 1.6e-11 43.9 0.1 2.1e-11 43.6 0.1 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region dCMP_cyt_deam_2 PF08211.12 gi|89256777|ref|YP_514139.1| - 2.2e-08 34.4 0.1 2.6e-08 34.1 0.1 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region LmjF365940-deam PF14421.6 gi|89256777|ref|YP_514139.1| - 0.0001 22.0 0.3 0.0053 16.4 0.0 2.0 1 1 1 2 2 2 2 A distinct subfamily of CDD/CDA-like deaminases DUF3813 PF12758.7 gi|89256777|ref|YP_514139.1| - 0.19 12.1 0.8 0.44 10.9 0.2 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3813) FAD-oxidase_C PF02913.19 gi|89256778|ref|YP_514140.1| - 1.4e-48 165.7 0.0 1.9e-48 165.3 0.0 1.2 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 gi|89256778|ref|YP_514140.1| - 9.6e-29 99.9 0.0 1.6e-28 99.1 0.0 1.4 1 0 0 1 1 1 1 FAD binding domain Fer4_8 PF13183.6 gi|89256778|ref|YP_514140.1| - 4.7e-09 36.6 0.4 1.1e-08 35.4 0.4 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|89256778|ref|YP_514140.1| - 0.00069 19.6 1.7 0.0024 17.9 1.7 1.9 1 0 0 1 1 1 1 4Fe-4S binding domain Fer4_4 PF12800.7 gi|89256778|ref|YP_514140.1| - 0.0012 19.2 0.8 0.0037 17.7 0.8 1.8 1 0 0 1 1 1 1 4Fe-4S binding domain Fer4_7 PF12838.7 gi|89256778|ref|YP_514140.1| - 0.0014 19.1 0.1 0.0042 17.6 0.1 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|89256778|ref|YP_514140.1| - 0.0015 18.6 0.1 0.0044 17.1 0.1 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|89256778|ref|YP_514140.1| - 0.0067 16.6 0.1 0.021 15.0 0.1 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|89256778|ref|YP_514140.1| - 0.0074 16.1 3.1 0.016 15.0 3.1 1.6 1 0 0 1 1 1 1 4Fe-4S binding domain Fer4_18 PF13746.6 gi|89256778|ref|YP_514140.1| - 0.0082 16.3 0.1 0.029 14.5 0.1 1.9 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|89256778|ref|YP_514140.1| - 0.013 15.3 0.1 0.038 13.7 0.1 1.7 1 0 0 1 1 1 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_6 PF12837.7 gi|89256778|ref|YP_514140.1| - 0.015 15.4 2.6 0.041 14.0 2.6 1.7 1 0 0 1 1 1 0 4Fe-4S binding domain Fer4_21 PF14697.6 gi|89256778|ref|YP_514140.1| - 0.022 14.9 0.6 0.022 14.9 0.6 2.4 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|89256778|ref|YP_514140.1| - 0.037 14.6 1.4 0.14 12.8 1.5 1.9 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|89256778|ref|YP_514140.1| - 2.2 9.4 5.0 7.9 7.7 5.0 2.0 1 0 0 1 1 1 0 4Fe-4S binding domain Metalloenzyme PF01676.18 gi|89256779|ref|YP_514141.1| - 1.1e-84 283.7 0.5 1.3e-84 283.5 0.5 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily iPGM_N PF06415.13 gi|89256779|ref|YP_514141.1| - 7.8e-83 277.2 1.2 1.1e-82 276.7 1.2 1.2 1 0 0 1 1 1 1 BPG-independent PGAM N-terminus (iPGM_N) Sulfatase PF00884.23 gi|89256779|ref|YP_514141.1| - 1e-06 28.4 0.1 2.5e-05 23.8 0.0 2.5 3 0 0 3 3 3 1 Sulfatase Phosphodiest PF01663.22 gi|89256779|ref|YP_514141.1| - 1e-06 28.6 0.0 2.2e-06 27.5 0.0 1.6 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase PGM_PMM_II PF02879.16 gi|89256779|ref|YP_514141.1| - 0.013 16.2 0.0 6.8 7.4 0.0 3.4 2 1 1 3 3 3 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AP_endonuc_2 PF01261.24 gi|89256779|ref|YP_514141.1| - 0.034 13.6 0.0 0.077 12.4 0.0 1.5 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel SAS-6_N PF16531.5 gi|89256779|ref|YP_514141.1| - 0.049 14.2 0.7 0.14 12.7 0.4 2.0 2 0 0 2 2 2 0 Centriolar protein SAS N-terminal PglZ PF08665.12 gi|89256779|ref|YP_514141.1| - 0.17 12.0 0.4 0.59 10.2 0.0 2.1 3 0 0 3 3 3 0 PglZ domain tRNA-synt_2b PF00587.25 gi|89256780|ref|YP_514142.1| - 1.4e-34 119.6 0.1 2.9e-34 118.6 0.0 1.5 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.22 gi|89256780|ref|YP_514142.1| - 5.4e-27 94.2 9.2 5.4e-27 94.2 9.2 1.7 2 0 0 2 2 2 1 Seryl-tRNA synthetase N-terminal domain Dynamitin PF04912.14 gi|89256780|ref|YP_514142.1| - 0.0049 16.2 2.8 0.0076 15.6 2.8 1.2 1 0 0 1 1 1 1 Dynamitin Atg14 PF10186.9 gi|89256780|ref|YP_514142.1| - 0.023 13.8 2.6 0.037 13.1 2.6 1.3 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 Apt1 PF10351.9 gi|89256780|ref|YP_514142.1| - 0.033 13.1 2.7 0.05 12.5 2.7 1.2 1 0 0 1 1 1 0 Golgi-body localisation protein domain DUF5446 PF17522.2 gi|89256780|ref|YP_514142.1| - 0.041 14.1 1.6 0.08 13.1 0.1 2.2 2 0 0 2 2 2 0 Family of unknown function (DUF5446) DUF2126 PF09899.9 gi|89256780|ref|YP_514142.1| - 0.065 11.3 0.0 0.084 10.9 0.0 1.1 1 0 0 1 1 1 0 Putative amidoligase enzyme (DUF2126) DUF4201 PF13870.6 gi|89256780|ref|YP_514142.1| - 0.11 12.2 10.9 3.9 7.2 8.1 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4201) FapA PF03961.13 gi|89256780|ref|YP_514142.1| - 0.11 11.1 4.5 0.16 10.5 4.5 1.2 1 0 0 1 1 1 0 Flagellar Assembly Protein A Spectrin PF00435.21 gi|89256780|ref|YP_514142.1| - 0.12 12.9 8.1 0.46 11.0 8.1 2.0 1 0 0 1 1 1 0 Spectrin repeat DUF1319 PF07028.11 gi|89256780|ref|YP_514142.1| - 0.13 12.5 3.8 0.3 11.3 3.8 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1319) JIP_LZII PF16471.5 gi|89256780|ref|YP_514142.1| - 0.15 12.2 3.2 2 8.7 0.4 2.6 2 0 0 2 2 2 0 JNK-interacting protein leucine zipper II HemX PF04375.14 gi|89256780|ref|YP_514142.1| - 0.2 10.9 5.6 0.31 10.3 5.6 1.2 1 0 0 1 1 1 0 HemX, putative uroporphyrinogen-III C-methyltransferase RED_C PF07807.11 gi|89256780|ref|YP_514142.1| - 0.48 10.9 3.2 1.4 9.5 3.2 1.7 1 0 0 1 1 1 0 RED-like protein C-terminal region PCRF PF03462.18 gi|89256780|ref|YP_514142.1| - 1 9.2 6.8 0.52 10.2 4.5 1.6 2 0 0 2 2 2 0 PCRF domain Ax_dynein_light PF10211.9 gi|89256780|ref|YP_514142.1| - 1.3 8.9 9.2 2.6 7.9 9.2 1.5 1 0 0 1 1 1 0 Axonemal dynein light chain LOH1CR12 PF10158.9 gi|89256780|ref|YP_514142.1| - 1.4 9.0 4.8 0.56 10.2 1.4 2.0 3 0 0 3 3 3 0 Tumour suppressor protein NPV_P10 PF05531.12 gi|89256780|ref|YP_514142.1| - 1.5 9.4 6.0 5.8 7.5 5.4 2.3 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein DUF1664 PF07889.12 gi|89256780|ref|YP_514142.1| - 4 7.5 7.6 6 6.9 6.5 1.8 2 1 0 2 2 2 0 Protein of unknown function (DUF1664) ROK PF00480.20 gi|89256781|ref|YP_514143.1| - 2.2e-72 244.0 0.1 2.8e-72 243.7 0.1 1.1 1 0 0 1 1 1 1 ROK family Polysacc_synt PF01943.17 gi|89256782|ref|YP_514144.1| - 4.4e-08 32.8 29.7 4.4e-08 32.8 29.7 2.2 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|89256782|ref|YP_514144.1| - 2.9e-07 30.6 12.7 2.9e-07 30.6 12.7 4.8 1 1 4 5 5 5 1 Polysaccharide biosynthesis C-terminal domain E1-E2_ATPase PF00122.20 gi|89256782|ref|YP_514144.1| - 7.9 6.0 20.9 0.038 13.5 1.3 3.6 2 2 1 3 3 3 0 E1-E2 ATPase Apolipoprotein PF01442.18 gi|89256783|ref|YP_514145.1| - 1.3e-06 28.4 12.2 1.7e-06 28.0 12.2 1.1 1 0 0 1 1 1 1 Apolipoprotein A1/A4/E domain Yae1_N PF09811.9 gi|89256783|ref|YP_514145.1| - 0.22 11.2 0.8 19 5.1 0.0 2.3 2 0 0 2 2 2 0 Essential protein Yae1, N terminal LMBR1 PF04791.16 gi|89256783|ref|YP_514145.1| - 0.26 10.2 7.3 0.27 10.1 7.3 1.1 1 0 0 1 1 1 0 LMBR1-like membrane protein ALMT PF11744.8 gi|89256783|ref|YP_514145.1| - 0.38 9.5 10.3 0.47 9.2 10.3 1.2 1 0 0 1 1 1 0 Aluminium activated malate transporter Fzo_mitofusin PF04799.13 gi|89256783|ref|YP_514145.1| - 0.56 9.7 14.0 0.43 10.1 4.1 2.3 1 1 1 2 2 2 0 fzo-like conserved region Phasin PF05597.11 gi|89256783|ref|YP_514145.1| - 0.92 9.5 16.4 2.2 8.3 8.6 2.3 1 1 1 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) PutA_N PF18083.1 gi|89256783|ref|YP_514145.1| - 1.1 9.3 4.8 6.1 6.9 0.5 2.4 3 0 0 3 3 3 0 Proline utilization A N-terminal domain COG5 PF10392.9 gi|89256783|ref|YP_514145.1| - 1.2 9.4 13.5 0.58 10.3 0.9 2.2 1 1 1 2 2 2 0 Golgi transport complex subunit 5 ApoO PF09769.9 gi|89256783|ref|YP_514145.1| - 1.2 9.0 8.8 4.6 7.2 0.9 2.9 1 1 1 2 2 2 0 Apolipoprotein O DUF1043 PF06295.12 gi|89256783|ref|YP_514145.1| - 1.4 8.9 15.6 0.62 10.1 9.8 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1043) DUF883 PF05957.13 gi|89256783|ref|YP_514145.1| - 1.7 9.3 16.9 3.2 8.4 2.2 2.5 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) CCDC84 PF14968.6 gi|89256783|ref|YP_514145.1| - 1.8 8.1 12.5 2.2 7.8 12.5 1.1 1 0 0 1 1 1 0 Coiled coil protein 84 Baculo_PEP_C PF04513.12 gi|89256783|ref|YP_514145.1| - 2.8 8.0 16.9 0.43 10.6 5.7 2.1 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus LUC7 PF03194.15 gi|89256783|ref|YP_514145.1| - 6.2 6.4 15.8 7.7 6.1 15.8 1.1 1 0 0 1 1 1 0 LUC7 N_terminus RB_A PF01858.17 gi|89256783|ref|YP_514145.1| - 6.8 6.5 10.1 3.2 7.5 3.2 2.1 1 1 1 2 2 2 0 Retinoblastoma-associated protein A domain Remorin_C PF03763.13 gi|89256783|ref|YP_514145.1| - 7.5 6.5 18.0 1.1 9.1 7.7 2.2 1 1 1 2 2 2 0 Remorin, C-terminal region DivIVA PF05103.13 gi|89256783|ref|YP_514145.1| - 7.7 6.6 23.5 1.4 9.0 8.0 2.3 1 1 1 2 2 2 0 DivIVA protein YtxH PF12732.7 gi|89256783|ref|YP_514145.1| - 8 7.1 24.0 11 6.6 3.3 3.2 1 1 1 2 2 1 0 YtxH-like protein Prominin PF05478.11 gi|89256783|ref|YP_514145.1| - 8.4 4.2 14.9 14 3.5 14.9 1.3 1 1 0 1 1 1 0 Prominin ABC_tran PF00005.27 gi|89256784|ref|YP_514146.1| - 1.7e-29 103.1 0.7 3.2e-29 102.2 0.7 1.5 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.23 gi|89256784|ref|YP_514146.1| - 3.4e-25 89.2 18.1 6e-25 88.4 18.1 1.3 1 0 0 1 1 1 1 ABC transporter transmembrane region RsgA_GTPase PF03193.16 gi|89256784|ref|YP_514146.1| - 3.7e-07 30.2 0.1 9.6e-07 28.8 0.1 1.7 1 0 0 1 1 1 1 RsgA GTPase SMC_N PF02463.19 gi|89256784|ref|YP_514146.1| - 5.3e-07 29.3 1.3 6.6e-05 22.4 0.1 2.4 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|89256784|ref|YP_514146.1| - 2.6e-06 27.5 7.1 0.0035 17.2 0.1 3.1 1 1 2 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system T2SSE PF00437.20 gi|89256784|ref|YP_514146.1| - 0.00024 20.3 0.0 0.00045 19.4 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein MMR_HSR1 PF01926.23 gi|89256784|ref|YP_514146.1| - 0.00056 20.0 0.4 0.002 18.2 0.1 2.0 2 0 0 2 2 2 1 50S ribosome-binding GTPase AAA_22 PF13401.6 gi|89256784|ref|YP_514146.1| - 0.0024 18.1 0.7 0.038 14.3 0.7 2.3 1 1 0 1 1 1 1 AAA domain Dynamin_N PF00350.23 gi|89256784|ref|YP_514146.1| - 0.0027 17.8 0.2 0.0091 16.1 0.2 2.0 1 1 0 1 1 1 1 Dynamin family RuvB_N PF05496.12 gi|89256784|ref|YP_514146.1| - 0.0037 17.0 0.1 1.5 8.5 0.0 3.0 3 0 0 3 3 3 1 Holliday junction DNA helicase RuvB P-loop domain AAA_29 PF13555.6 gi|89256784|ref|YP_514146.1| - 0.0059 16.3 0.2 0.014 15.1 0.2 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|89256784|ref|YP_514146.1| - 0.0071 16.7 0.1 0.022 15.2 0.1 1.8 1 1 0 1 1 1 1 AAA ATPase domain G-alpha PF00503.20 gi|89256784|ref|YP_514146.1| - 0.0085 15.3 0.5 0.015 14.5 0.5 1.3 1 0 0 1 1 1 1 G-protein alpha subunit IstB_IS21 PF01695.17 gi|89256784|ref|YP_514146.1| - 0.015 15.1 0.1 2.8 7.6 0.0 2.4 2 0 0 2 2 2 0 IstB-like ATP binding protein TrwB_AAD_bind PF10412.9 gi|89256784|ref|YP_514146.1| - 0.015 14.2 0.0 0.032 13.1 0.0 1.5 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain Septin PF00735.18 gi|89256784|ref|YP_514146.1| - 0.016 14.5 0.4 0.032 13.5 0.0 1.7 2 0 0 2 2 1 0 Septin MobB PF03205.14 gi|89256784|ref|YP_514146.1| - 0.017 15.0 0.2 0.045 13.6 0.2 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_28 PF13521.6 gi|89256784|ref|YP_514146.1| - 0.018 15.3 0.3 0.035 14.3 0.3 1.4 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|89256784|ref|YP_514146.1| - 0.019 15.1 0.0 0.05 13.8 0.0 1.7 2 0 0 2 2 1 0 AAA domain AAA_24 PF13479.6 gi|89256784|ref|YP_514146.1| - 0.026 14.3 0.0 0.05 13.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 gi|89256784|ref|YP_514146.1| - 0.027 14.1 0.1 0.056 13.0 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain FtsK_SpoIIIE PF01580.18 gi|89256784|ref|YP_514146.1| - 0.027 13.8 0.0 0.055 12.8 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family Roc PF08477.13 gi|89256784|ref|YP_514146.1| - 0.03 14.5 2.9 0.36 11.0 0.1 3.1 3 1 1 4 4 3 0 Ras of Complex, Roc, domain of DAPkinase ResIII PF04851.15 gi|89256784|ref|YP_514146.1| - 0.033 14.2 1.2 0.31 11.0 0.8 2.7 1 1 1 2 2 2 0 Type III restriction enzyme, res subunit Zeta_toxin PF06414.12 gi|89256784|ref|YP_514146.1| - 0.034 13.4 0.0 0.066 12.5 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_7 PF12775.7 gi|89256784|ref|YP_514146.1| - 0.052 13.1 0.0 0.094 12.2 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_30 PF13604.6 gi|89256784|ref|YP_514146.1| - 0.085 12.6 0.0 0.22 11.2 0.0 1.7 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|89256784|ref|YP_514146.1| - 0.12 11.9 1.4 1.2 8.7 0.3 2.4 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_18 PF13238.6 gi|89256784|ref|YP_514146.1| - 0.14 12.7 0.7 0.29 11.7 0.6 1.7 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|89256784|ref|YP_514146.1| - 3.7 7.4 5.2 1.6 8.6 0.3 2.6 3 0 0 3 3 3 0 NTPase AAA_23 PF13476.6 gi|89256784|ref|YP_514146.1| - 4 7.9 9.1 20 5.6 7.8 2.6 1 1 1 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|89256785|ref|YP_514147.1| - 9.8e-29 100.6 0.1 1.6e-28 99.9 0.1 1.4 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.23 gi|89256785|ref|YP_514147.1| - 4.4e-13 49.5 16.5 1.4e-12 47.8 16.5 1.8 1 1 0 1 1 1 1 ABC transporter transmembrane region SMC_N PF02463.19 gi|89256785|ref|YP_514147.1| - 5.2e-08 32.6 0.1 5.2e-08 32.6 0.1 1.9 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|89256785|ref|YP_514147.1| - 4.6e-07 29.9 1.5 3.2e-06 27.2 0.2 2.7 2 1 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system DUF87 PF01935.17 gi|89256785|ref|YP_514147.1| - 0.0054 16.9 2.2 0.023 14.8 0.1 2.2 2 0 0 2 2 2 1 Helicase HerA, central domain IstB_IS21 PF01695.17 gi|89256785|ref|YP_514147.1| - 0.03 14.1 0.0 5.8 6.6 0.0 2.7 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_22 PF13401.6 gi|89256785|ref|YP_514147.1| - 0.038 14.3 0.1 0.23 11.7 0.1 2.2 1 1 0 1 1 1 0 AAA domain SapB_1 PF05184.15 gi|89256785|ref|YP_514147.1| - 0.069 13.2 0.8 0.17 11.9 0.8 1.7 1 0 0 1 1 1 0 Saposin-like type B, region 1 RsgA_GTPase PF03193.16 gi|89256785|ref|YP_514147.1| - 0.091 12.7 0.0 0.29 11.0 0.0 1.9 1 0 0 1 1 1 0 RsgA GTPase ETRAMP PF09716.10 gi|89256785|ref|YP_514147.1| - 0.5 10.5 2.9 2.2 8.4 1.2 2.6 2 0 0 2 2 2 0 Malarial early transcribed membrane protein (ETRAMP) SDF PF00375.18 gi|89256786|ref|YP_514148.1| - 8.4e-101 337.8 45.0 9.4e-101 337.6 45.0 1.0 1 0 0 1 1 1 1 Sodium:dicarboxylate symporter family Ribonuc_L-PSP PF01042.21 gi|89256787|ref|YP_514149.1| - 5.9e-43 145.7 0.1 6.6e-43 145.6 0.1 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP YjgF_endoribonc PF14588.6 gi|89256787|ref|YP_514149.1| - 0.032 14.4 0.1 0.047 13.8 0.1 1.4 1 1 0 1 1 1 0 YjgF/chorismate_mutase-like, putative endoribonuclease Eclosion PF04736.12 gi|89256787|ref|YP_514149.1| - 0.051 13.3 0.0 0.1 12.3 0.0 1.5 1 0 0 1 1 1 0 Eclosion hormone Sulfate_transp PF00916.20 gi|89256788|ref|YP_514150.1| - 4.3e-54 183.7 42.3 1.3e-31 109.7 10.7 2.5 1 1 2 3 3 3 2 Sulfate permease family STAS PF01740.21 gi|89256788|ref|YP_514150.1| - 1.7e-10 40.6 0.0 3.4e-10 39.6 0.0 1.5 1 0 0 1 1 1 1 STAS domain LapA_dom PF06305.11 gi|89256788|ref|YP_514150.1| - 4.7 7.1 0.0 4.7 7.1 0.0 4.5 5 0 0 5 5 5 0 Lipopolysaccharide assembly protein A domain DDE_Tnp_1_2 PF13586.6 gi|89256789|ref|YP_514151.1| - 2.9e-14 53.2 0.1 4.6e-14 52.5 0.1 1.3 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|89256789|ref|YP_514151.1| - 1.6e-12 47.6 2.3 1.7e-11 44.2 2.3 1.9 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 gi|89256789|ref|YP_514151.1| - 3.5e-08 33.6 0.1 4.2e-08 33.4 0.1 1.1 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.6 gi|89256789|ref|YP_514151.1| - 8.9e-05 22.2 0.2 0.00011 21.9 0.2 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease MutL PF13941.6 gi|89256789|ref|YP_514151.1| - 0.11 11.0 0.0 0.11 11.0 0.0 1.1 1 0 0 1 1 1 0 MutL protein MFS_1 PF07690.16 gi|89256790|ref|YP_514152.1| - 1.6e-21 76.6 37.5 1.6e-21 76.6 37.5 2.1 1 1 1 2 2 2 1 Major Facilitator Superfamily HD_assoc PF13286.6 gi|89256791|ref|YP_514153.1| - 5.5e-16 58.9 0.0 1.2e-15 57.8 0.0 1.6 1 0 0 1 1 1 1 Phosphohydrolase-associated domain HD PF01966.22 gi|89256791|ref|YP_514153.1| - 5.8e-16 58.8 0.5 1.3e-15 57.6 0.5 1.8 1 1 0 1 1 1 1 HD domain HD_2 PF12917.7 gi|89256791|ref|YP_514153.1| - 0.00044 20.1 0.1 0.001 18.9 0.1 1.5 1 0 0 1 1 1 1 HD containing hydrolase-like enzyme PDEase_I PF00233.19 gi|89256791|ref|YP_514153.1| - 0.012 15.3 0.1 0.03 14.0 0.1 1.6 1 0 0 1 1 1 0 3'5'-cyclic nucleotide phosphodiesterase HDOD PF08668.12 gi|89256791|ref|YP_514153.1| - 0.02 14.3 0.0 0.036 13.5 0.0 1.4 1 0 0 1 1 1 0 HDOD domain FIVAR PF07554.13 gi|89256791|ref|YP_514153.1| - 0.076 13.8 0.3 0.2 12.5 0.3 1.7 1 0 0 1 1 1 0 FIVAR domain 2-oxogl_dehyd_N PF16078.5 gi|89256791|ref|YP_514153.1| - 0.076 12.6 0.1 0.16 11.5 0.1 1.5 1 0 0 1 1 1 0 2-oxoglutarate dehydrogenase N-terminus RAWUL PF16207.5 gi|89256791|ref|YP_514153.1| - 0.11 13.1 0.0 3 8.6 0.0 2.6 2 0 0 2 2 2 0 RAWUL domain RING finger- and WD40-associated ubiquitin-like peroxidase PF00141.23 gi|89256792|ref|YP_514154.1| - 3.3e-86 288.7 0.0 2.4e-48 164.9 0.0 2.3 2 0 0 2 2 2 2 Peroxidase PhageMin_Tail PF10145.9 gi|89256792|ref|YP_514154.1| - 0.022 14.6 0.8 5.9 6.7 0.2 2.6 2 0 0 2 2 2 0 Phage-related minor tail protein DUF438 PF04282.13 gi|89256792|ref|YP_514154.1| - 0.056 13.4 1.2 0.15 12.0 0.0 2.3 3 0 0 3 3 3 0 Family of unknown function (DUF438) DDE_3 PF13358.6 gi|89256793|ref|YP_514155.1| - 2.3e-30 105.3 0.1 7.9e-30 103.5 0.0 1.8 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.16 gi|89256793|ref|YP_514155.1| - 0.0029 17.6 1.5 0.0084 16.2 0.6 2.3 2 1 0 2 2 2 1 Transposase HTH_29 PF13551.6 gi|89256793|ref|YP_514155.1| - 0.0033 17.4 0.0 0.008 16.2 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn helix HTH_40 PF14493.6 gi|89256793|ref|YP_514155.1| - 0.0099 16.3 0.1 0.069 13.6 0.0 2.3 3 1 0 3 3 3 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|89256793|ref|YP_514155.1| - 0.026 14.6 0.0 0.073 13.2 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|89256793|ref|YP_514155.1| - 0.12 12.2 0.0 0.34 10.8 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain rve PF00665.26 gi|89256793|ref|YP_514155.1| - 0.15 12.3 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 Integrase core domain DDE_Tnp_ISAZ013 PF07592.11 gi|89256793|ref|YP_514155.1| - 0.17 10.9 0.3 1.1 8.1 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain adh_short_C2 PF13561.6 gi|89256794|ref|YP_514156.1| - 7.7e-31 107.4 0.0 8.4e-31 107.3 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|89256794|ref|YP_514156.1| - 7.5e-20 71.2 0.0 8.5e-20 71.0 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase DUF1776 PF08643.10 gi|89256794|ref|YP_514156.1| - 0.071 12.5 0.0 0.077 12.3 0.0 1.1 1 0 0 1 1 1 0 Fungal family of unknown function (DUF1776) adh_short PF00106.25 gi|89256795|ref|YP_514157.1| - 3.4e-14 52.7 0.1 3.8e-14 52.6 0.1 1.0 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|89256795|ref|YP_514157.1| - 1.7e-10 40.9 0.1 1.9e-10 40.7 0.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase Epimerase PF01370.21 gi|89256795|ref|YP_514157.1| - 6.3e-06 25.8 0.0 7.2e-06 25.6 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|89256795|ref|YP_514157.1| - 1.2e-05 24.9 0.1 1.5e-05 24.6 0.1 1.1 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase KR PF08659.10 gi|89256795|ref|YP_514157.1| - 1.3e-05 25.2 0.0 1.8e-05 24.7 0.0 1.1 1 0 0 1 1 1 1 KR domain Polysacc_synt_2 PF02719.15 gi|89256795|ref|YP_514157.1| - 0.0042 16.3 0.0 0.005 16.0 0.0 1.1 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein 3HCDH_N PF02737.18 gi|89256795|ref|YP_514157.1| - 0.0055 16.6 0.0 0.0058 16.5 0.0 1.1 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|89256795|ref|YP_514157.1| - 0.0068 17.0 0.2 0.0098 16.5 0.2 1.2 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent RmlD_sub_bind PF04321.17 gi|89256795|ref|YP_514157.1| - 0.04 13.0 0.1 0.064 12.3 0.1 1.3 1 1 0 1 1 1 0 RmlD substrate binding domain Peptidase_S13 PF02113.15 gi|89256796|ref|YP_514158.1| - 3.7e-26 91.9 0.0 4.3e-26 91.7 0.0 1.0 1 0 0 1 1 1 1 D-Ala-D-Ala carboxypeptidase 3 (S13) family Peptidase_S11 PF00768.20 gi|89256796|ref|YP_514158.1| - 0.0028 17.1 0.0 0.0041 16.6 0.0 1.4 1 0 0 1 1 1 1 D-alanyl-D-alanine carboxypeptidase SurA_N_3 PF13624.6 gi|89256796|ref|YP_514158.1| - 0.016 15.0 0.8 0.021 14.6 0.4 1.4 1 1 0 1 1 1 0 SurA N-terminal domain DUF569 PF04601.13 gi|89256796|ref|YP_514158.1| - 0.13 11.9 0.0 0.19 11.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF569) MFS_1 PF07690.16 gi|89256797|ref|YP_514159.1| - 2.2e-38 132.1 40.2 2.2e-38 132.1 40.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily GDPD PF03009.17 gi|89256798|ref|YP_514160.1| - 8.9e-39 133.8 1.7 1.1e-38 133.5 1.7 1.1 1 0 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family GDPD_2 PF13653.6 gi|89256798|ref|YP_514160.1| - 5.8e-05 23.4 3.0 7.5e-05 23.0 1.3 2.3 2 0 0 2 2 2 1 Glycerophosphoryl diester phosphodiesterase family PGA_cap PF09587.10 gi|89256798|ref|YP_514160.1| - 0.0023 17.4 0.0 0.0038 16.7 0.0 1.3 1 0 0 1 1 1 1 Bacterial capsule synthesis protein PGA_cap PI-PLC-X PF00388.19 gi|89256798|ref|YP_514160.1| - 0.044 13.4 0.0 0.16 11.6 0.0 1.9 2 0 0 2 2 2 0 Phosphatidylinositol-specific phospholipase C, X domain HlyD_3 PF13437.6 gi|89256799|ref|YP_514161.1| - 4e-10 40.3 0.0 1.2e-09 38.9 0.0 1.9 1 0 0 1 1 1 1 HlyD family secretion protein HlyD_D23 PF16576.5 gi|89256799|ref|YP_514161.1| - 1.8e-08 33.9 1.9 6.4e-07 28.8 1.9 2.2 1 1 0 1 1 1 1 Barrel-sandwich domain of CusB or HlyD membrane-fusion HlyD_2 PF12700.7 gi|89256799|ref|YP_514161.1| - 4.7e-05 22.3 12.2 0.00039 19.3 12.2 2.3 1 1 0 1 1 1 1 HlyD family secretion protein Biotin_lipoyl PF00364.22 gi|89256799|ref|YP_514161.1| - 0.00032 20.5 0.1 0.68 9.8 0.0 3.3 3 0 0 3 3 3 2 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 gi|89256799|ref|YP_514161.1| - 0.039 13.8 1.4 0.12 12.3 0.1 2.6 3 1 0 3 3 3 0 Biotin-lipoyl like Prok-TraM PF09228.10 gi|89256799|ref|YP_514161.1| - 0.072 13.5 2.0 0.094 13.1 0.7 1.8 2 0 0 2 2 2 0 Prokaryotic Transcriptional repressor TraM Vps39_2 PF10367.9 gi|89256799|ref|YP_514161.1| - 0.32 11.4 1.3 0.46 10.9 0.1 1.8 2 0 0 2 2 2 0 Vacuolar sorting protein 39 domain 2 ABC_tran PF00005.27 gi|89256800|ref|YP_514162.1| - 7.1e-30 104.3 0.0 1.3e-29 103.5 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|89256800|ref|YP_514162.1| - 3.9e-11 43.3 0.1 7e-08 32.6 0.0 2.3 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|89256800|ref|YP_514162.1| - 0.00097 18.6 0.1 0.48 9.8 0.0 2.3 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|89256800|ref|YP_514162.1| - 0.0025 17.6 1.5 0.35 10.5 0.0 3.1 2 1 1 3 3 3 1 AAA ATPase domain Cdc6_C PF09079.11 gi|89256800|ref|YP_514162.1| - 0.016 15.2 0.0 0.047 13.7 0.0 1.8 1 0 0 1 1 1 0 CDC6, C terminal winged helix domain AAA_23 PF13476.6 gi|89256800|ref|YP_514162.1| - 0.056 13.9 0.1 0.056 13.9 0.1 2.3 2 1 0 3 3 3 0 AAA domain AAA_29 PF13555.6 gi|89256800|ref|YP_514162.1| - 0.087 12.6 0.1 0.34 10.7 0.0 1.9 2 0 0 2 2 2 0 P-loop containing region of AAA domain Mg_chelatase PF01078.21 gi|89256800|ref|YP_514162.1| - 0.1 11.9 0.0 0.67 9.3 0.0 2.0 1 1 1 2 2 2 0 Magnesium chelatase, subunit ChlI ABC2_membrane_3 PF12698.7 gi|89256801|ref|YP_514163.1| - 2.8e-09 36.5 0.8 3.3e-09 36.3 0.8 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|89256801|ref|YP_514163.1| - 0.0088 15.4 0.0 0.0092 15.3 0.0 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein Sigma54_CBD PF04963.13 gi|89256801|ref|YP_514163.1| - 0.14 12.0 0.0 0.18 11.6 0.0 1.2 1 0 0 1 1 1 0 Sigma-54 factor, core binding domain ABC2_membrane PF01061.24 gi|89256802|ref|YP_514164.1| - 7e-30 104.0 20.4 7e-30 104.0 20.4 1.6 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|89256802|ref|YP_514164.1| - 3e-20 72.7 30.8 3.3e-20 72.5 30.8 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|89256802|ref|YP_514164.1| - 1e-15 57.8 19.2 1.3e-15 57.5 19.2 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|89256802|ref|YP_514164.1| - 0.00015 21.8 19.2 0.00015 21.8 19.2 2.2 2 1 0 2 2 2 1 ABC-2 family transporter protein DDE_Tnp_1_2 PF13586.6 gi|89256803|ref|YP_514165.1| - 4.5e-14 52.6 0.1 8.1e-14 51.8 0.1 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|89256803|ref|YP_514165.1| - 3.6e-12 46.4 2.1 3.4e-11 43.2 2.1 1.9 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 gi|89256803|ref|YP_514165.1| - 6e-08 32.9 0.0 8.1e-08 32.4 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.6 gi|89256803|ref|YP_514165.1| - 0.00016 21.4 0.2 0.00021 21.0 0.2 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease DUF4096 PF13340.6 gi|89256803|ref|YP_514165.1| - 0.0052 17.0 0.0 0.01 16.0 0.0 1.5 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) CHMI PF02962.15 gi|89256804|ref|YP_514166.1| - 6.1e-06 26.6 0.0 7.1e-06 26.4 0.0 1.1 1 0 0 1 1 1 1 5-carboxymethyl-2-hydroxymuconate isomerase LD_cluster3 PF18180.1 gi|89256804|ref|YP_514166.1| - 0.071 12.7 0.0 0.086 12.5 0.0 1.1 1 0 0 1 1 1 0 SLOG cluster3 family UPRTase PF14681.6 gi|89256805|ref|YP_514167.1| - 2.1e-63 213.5 0.0 2.4e-63 213.3 0.0 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.27 gi|89256805|ref|YP_514167.1| - 9.5e-14 51.2 0.5 1.3e-13 50.8 0.5 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Glyco_hydro_18 PF00704.28 gi|89256806|ref|YP_514168.1| - 6e-58 197.0 11.2 6e-58 197.0 11.2 2.2 2 0 0 2 2 2 1 Glycosyl hydrolases family 18 fn3 PF00041.21 gi|89256806|ref|YP_514168.1| - 8.5e-08 32.4 1.9 2.1e-07 31.2 0.9 2.3 2 1 0 2 2 2 1 Fibronectin type III domain CBM_5_12 PF02839.14 gi|89256806|ref|YP_514168.1| - 2.8e-07 30.7 19.7 3.3e-05 24.2 7.4 4.7 4 0 0 4 4 4 2 Carbohydrate binding domain Pur_ac_phosph_N PF16656.5 gi|89256806|ref|YP_514168.1| - 0.013 16.0 0.9 0.25 11.9 0.9 2.9 1 1 0 1 1 1 0 Purple acid Phosphatase, N-terminal domain Interfer-bind PF09294.10 gi|89256806|ref|YP_514168.1| - 0.11 12.9 0.1 0.24 11.7 0.1 1.5 1 0 0 1 1 1 0 Interferon-alpha/beta receptor, fibronectin type III Aminotran_1_2 PF00155.21 gi|89256807|ref|YP_514169.1| - 8.1e-73 245.7 0.0 9.2e-73 245.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II SHMT PF00464.19 gi|89256807|ref|YP_514169.1| - 5.8e-06 25.2 0.1 1.8e-05 23.5 0.1 1.9 1 1 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_5 PF00266.19 gi|89256807|ref|YP_514169.1| - 3.4e-05 23.0 0.1 0.00022 20.3 0.0 2.1 2 0 0 2 2 2 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|89256807|ref|YP_514169.1| - 0.00027 20.3 0.2 0.00054 19.3 0.2 1.4 1 1 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 gi|89256807|ref|YP_514169.1| - 0.0043 15.6 0.0 0.0064 15.1 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme HATPase_c_5 PF14501.6 gi|89256807|ref|YP_514169.1| - 0.06 13.3 0.1 0.17 11.8 0.0 1.8 2 0 0 2 2 2 0 GHKL domain Flg_hook PF02120.16 gi|89256807|ref|YP_514169.1| - 0.068 13.1 0.1 0.45 10.4 0.1 2.2 3 0 0 3 3 3 0 Flagellar hook-length control protein FliK ADH_N PF08240.12 gi|89256808|ref|YP_514170.1| - 7.7e-33 112.6 1.5 1.5e-32 111.8 1.5 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|89256808|ref|YP_514170.1| - 1.2e-23 83.5 0.1 1.9e-23 82.9 0.1 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 gi|89256808|ref|YP_514170.1| - 7.2e-06 25.6 0.1 3.3e-05 23.5 0.1 2.0 1 1 0 1 1 1 1 Glucose dehydrogenase C-terminus AlaDh_PNT_C PF01262.21 gi|89256808|ref|YP_514170.1| - 9.7e-05 21.8 0.1 0.00015 21.1 0.1 1.2 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_3 PF01494.19 gi|89256808|ref|YP_514170.1| - 0.11 11.8 0.0 0.28 10.4 0.0 1.6 2 0 0 2 2 2 0 FAD binding domain I-EGF_1 PF18372.1 gi|89256808|ref|YP_514170.1| - 0.56 10.4 4.0 1.3 9.2 4.0 1.6 1 0 0 1 1 1 0 Integrin beta epidermal growth factor like domain 1 Trp_Tyr_perm PF03222.13 gi|89256809|ref|YP_514171.1| - 6.7e-11 41.9 41.7 1e-10 41.3 41.7 1.2 1 0 0 1 1 1 1 Tryptophan/tyrosine permease family IspD PF01128.19 gi|89256810|ref|YP_514172.1| - 1e-54 185.6 0.0 1.2e-54 185.4 0.0 1.0 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NTP_transf_3 PF12804.7 gi|89256810|ref|YP_514172.1| - 5.2e-06 26.9 0.0 1.3e-05 25.6 0.0 1.6 1 1 1 2 2 2 1 MobA-like NTP transferase domain DNA_pol3_delta2 PF13177.6 gi|89256810|ref|YP_514172.1| - 0.012 15.4 0.1 0.1 12.4 0.1 2.0 1 1 1 2 2 2 0 DNA polymerase III, delta subunit CTP_transf_3 PF02348.19 gi|89256810|ref|YP_514172.1| - 0.092 12.7 0.1 0.12 12.3 0.1 1.3 1 0 0 1 1 1 0 Cytidylyltransferase DivIC PF04977.15 gi|89256811|ref|YP_514173.1| - 5e-17 61.4 1.4 6.6e-17 61.1 1.4 1.2 1 0 0 1 1 1 1 Septum formation initiator RcbX PF02341.15 gi|89256811|ref|YP_514173.1| - 0.011 16.0 0.3 0.015 15.5 0.3 1.2 1 0 0 1 1 1 0 RbcX protein Pox_LP_H2 PF03356.15 gi|89256811|ref|YP_514173.1| - 0.052 13.4 1.6 0.06 13.2 1.6 1.1 1 0 0 1 1 1 0 Viral late protein H2 Enolase_C PF00113.22 gi|89256812|ref|YP_514174.1| - 5.9e-132 439.4 0.2 9.3e-132 438.7 0.2 1.2 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.16 gi|89256812|ref|YP_514174.1| - 3.7e-57 192.1 0.1 6.8e-57 191.3 0.1 1.4 1 0 0 1 1 1 1 Enolase, N-terminal domain MR_MLE_C PF13378.6 gi|89256812|ref|YP_514174.1| - 1.3e-05 24.9 0.0 2.1e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 Enolase C-terminal domain-like MAAL_C PF07476.11 gi|89256812|ref|YP_514174.1| - 0.00092 18.4 0.3 0.0073 15.5 0.1 2.3 3 0 0 3 3 3 1 Methylaspartate ammonia-lyase C-terminus Anth_synt_I_N PF04715.13 gi|89256812|ref|YP_514174.1| - 0.063 13.5 0.0 0.13 12.5 0.0 1.5 1 0 0 1 1 1 0 Anthranilate synthase component I, N terminal region MFS_1 PF07690.16 gi|89256813|ref|YP_514175.1| - 4.6e-27 94.9 53.0 6.2e-18 64.8 18.0 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.13 gi|89256813|ref|YP_514175.1| - 7.1e-09 34.6 3.8 7.1e-09 34.6 3.8 2.1 1 1 0 2 2 2 1 Transmembrane secretion effector MFS_4 PF06779.14 gi|89256813|ref|YP_514175.1| - 5.9e-08 32.4 23.4 8.7e-08 31.8 23.4 1.2 1 0 0 1 1 1 1 Uncharacterised MFS-type transporter YbfB Sugar_tr PF00083.24 gi|89256813|ref|YP_514175.1| - 9.2e-05 21.5 17.1 9.2e-05 21.5 17.1 3.0 1 1 2 3 3 3 2 Sugar (and other) transporter MFS_1_like PF12832.7 gi|89256813|ref|YP_514175.1| - 0.22 10.4 38.5 0.96 8.2 15.0 2.4 1 1 1 2 2 2 0 MFS_1 like family NMN_transporter PF04973.12 gi|89256814|ref|YP_514176.1| - 8.7e-41 139.8 29.8 8.7e-41 139.8 29.8 1.4 2 0 0 2 2 2 1 Nicotinamide mononucleotide transporter PrgI PF12666.7 gi|89256814|ref|YP_514176.1| - 0.051 14.3 1.9 0.051 14.3 1.9 3.0 2 2 1 3 3 3 0 PrgI family protein tRNA_U5-meth_tr PF05958.11 gi|89256815|ref|YP_514177.1| - 1.1e-25 90.3 0.7 1.9e-25 89.6 0.7 1.5 1 1 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase Methyltransf_31 PF13847.6 gi|89256815|ref|YP_514177.1| - 1.1e-09 38.2 0.2 3.1e-09 36.8 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain RrnaAD PF00398.20 gi|89256815|ref|YP_514177.1| - 2.3e-08 33.4 0.1 3.9e-08 32.7 0.1 1.3 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_25 PF13649.6 gi|89256815|ref|YP_514177.1| - 3.3e-07 30.9 0.0 2.5e-06 28.1 0.0 2.4 3 0 0 3 3 2 1 Methyltransferase domain Met_10 PF02475.16 gi|89256815|ref|YP_514177.1| - 2.8e-06 27.2 0.1 5.9e-06 26.2 0.1 1.5 1 0 0 1 1 1 1 Met-10+ like-protein MTS PF05175.14 gi|89256815|ref|YP_514177.1| - 3.4e-05 23.4 0.0 7.1e-05 22.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_11 PF08241.12 gi|89256815|ref|YP_514177.1| - 0.00022 21.8 0.0 0.00093 19.8 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|89256815|ref|YP_514177.1| - 0.00076 18.9 0.0 0.0014 18.0 0.0 1.4 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_4 PF02390.17 gi|89256815|ref|YP_514177.1| - 0.00083 18.9 0.0 0.0015 18.1 0.0 1.4 1 0 0 1 1 1 1 Putative methyltransferase PCMT PF01135.19 gi|89256815|ref|YP_514177.1| - 0.0014 18.5 0.0 0.0029 17.4 0.0 1.5 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_23 PF13489.6 gi|89256815|ref|YP_514177.1| - 0.0043 16.9 0.0 0.0074 16.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|89256815|ref|YP_514177.1| - 0.0047 16.6 0.0 0.0085 15.7 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_12 PF08242.12 gi|89256815|ref|YP_514177.1| - 0.011 16.4 0.0 0.043 14.6 0.0 2.0 2 0 0 2 2 1 0 Methyltransferase domain Methyltransf_15 PF09445.10 gi|89256815|ref|YP_514177.1| - 0.014 15.0 0.1 0.044 13.4 0.1 1.8 1 1 1 2 2 2 0 RNA cap guanine-N2 methyltransferase DOT1 PF08123.13 gi|89256815|ref|YP_514177.1| - 0.028 13.9 0.0 0.048 13.2 0.0 1.3 1 0 0 1 1 1 0 Histone methylation protein DOT1 N6_N4_Mtase PF01555.18 gi|89256815|ref|YP_514177.1| - 0.031 14.0 0.0 0.05 13.3 0.0 1.3 1 0 0 1 1 1 0 DNA methylase Methyltr_RsmB-F PF01189.17 gi|89256815|ref|YP_514177.1| - 0.035 13.8 0.0 0.093 12.4 0.0 1.7 1 1 0 1 1 1 0 16S rRNA methyltransferase RsmB/F RNA_pol_Rpb6 PF01192.22 gi|89256817|ref|YP_514179.1| - 2.9e-13 49.5 0.3 3.8e-13 49.1 0.3 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb6 RNA_pol_A_bac PF01000.26 gi|89256817|ref|YP_514179.1| - 0.039 14.3 0.4 0.044 14.2 0.4 1.0 1 0 0 1 1 1 0 RNA polymerase Rpb3/RpoA insert domain PRK PF00485.18 gi|89256818|ref|YP_514180.1| - 3e-42 144.6 0.1 3.6e-42 144.3 0.1 1.1 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family AAA_18 PF13238.6 gi|89256818|ref|YP_514180.1| - 0.00012 22.6 0.1 0.00026 21.6 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|89256818|ref|YP_514180.1| - 0.00064 20.2 1.2 0.017 15.6 1.2 2.3 1 1 0 1 1 1 1 AAA domain Pox_A32 PF04665.12 gi|89256818|ref|YP_514180.1| - 0.00084 18.9 0.1 0.0023 17.5 0.1 1.7 1 0 0 1 1 1 1 Poxvirus A32 protein MobB PF03205.14 gi|89256818|ref|YP_514180.1| - 0.0018 18.2 0.4 0.0056 16.6 0.2 1.9 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.6 gi|89256818|ref|YP_514180.1| - 0.0023 18.1 0.0 0.0091 16.2 0.0 1.9 1 1 0 1 1 1 1 AAA domain cobW PF02492.19 gi|89256818|ref|YP_514180.1| - 0.012 15.2 0.0 0.027 14.1 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain T2SSE PF00437.20 gi|89256818|ref|YP_514180.1| - 0.012 14.6 0.0 0.021 13.9 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein NACHT PF05729.12 gi|89256818|ref|YP_514180.1| - 0.018 15.0 0.1 0.04 13.8 0.1 1.5 1 0 0 1 1 1 0 NACHT domain Thymidylate_kin PF02223.17 gi|89256818|ref|YP_514180.1| - 0.022 14.4 0.0 0.44 10.2 0.0 2.3 2 0 0 2 2 2 0 Thymidylate kinase KAP_NTPase PF07693.14 gi|89256818|ref|YP_514180.1| - 0.027 13.7 0.0 0.027 13.7 0.0 1.2 1 0 0 1 1 1 0 KAP family P-loop domain NB-ARC PF00931.22 gi|89256818|ref|YP_514180.1| - 0.046 12.9 0.5 0.074 12.2 0.5 1.3 1 0 0 1 1 1 0 NB-ARC domain Zeta_toxin PF06414.12 gi|89256818|ref|YP_514180.1| - 0.05 12.9 0.0 0.12 11.6 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin ABC_tran PF00005.27 gi|89256818|ref|YP_514180.1| - 0.051 14.1 1.4 0.089 13.3 1.3 1.6 1 1 0 1 1 1 0 ABC transporter CoaE PF01121.20 gi|89256818|ref|YP_514180.1| - 0.052 13.2 0.9 0.19 11.4 0.9 1.9 1 1 0 1 1 1 0 Dephospho-CoA kinase RNA_helicase PF00910.22 gi|89256818|ref|YP_514180.1| - 0.053 13.9 0.0 0.1 13.0 0.0 1.6 1 0 0 1 1 1 0 RNA helicase PhoH PF02562.16 gi|89256818|ref|YP_514180.1| - 0.053 13.0 0.0 0.16 11.4 0.0 1.7 2 0 0 2 2 2 0 PhoH-like protein DUF463 PF04317.12 gi|89256818|ref|YP_514180.1| - 0.054 12.4 0.0 0.071 12.0 0.0 1.3 1 0 0 1 1 1 0 YcjX-like family, DUF463 Mre11_DNA_bind PF04152.14 gi|89256818|ref|YP_514180.1| - 0.064 13.6 0.0 0.11 12.8 0.0 1.3 1 0 0 1 1 1 0 Mre11 DNA-binding presumed domain T3SS_needle_reg PF09025.10 gi|89256818|ref|YP_514180.1| - 0.07 13.1 0.1 0.19 11.7 0.0 1.7 2 0 0 2 2 2 0 YopR, type III needle-polymerisation regulator APS_kinase PF01583.20 gi|89256818|ref|YP_514180.1| - 0.078 12.9 0.0 1 9.3 0.0 2.2 2 0 0 2 2 2 0 Adenylylsulphate kinase DUF2075 PF09848.9 gi|89256818|ref|YP_514180.1| - 0.086 12.1 0.0 0.65 9.2 0.0 2.0 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) ATP-synt_ab PF00006.25 gi|89256818|ref|YP_514180.1| - 0.12 12.1 0.0 0.16 11.6 0.0 1.3 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_19 PF13245.6 gi|89256818|ref|YP_514180.1| - 0.18 12.1 0.0 0.35 11.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF87 PF01935.17 gi|89256818|ref|YP_514180.1| - 0.8 9.7 3.7 2.6 8.1 3.7 2.1 1 1 0 1 1 1 0 Helicase HerA, central domain DAHP_synth_1 PF00793.20 gi|89256819|ref|YP_514181.1| - 4.1e-74 248.9 0.0 4.5e-74 248.8 0.0 1.0 1 0 0 1 1 1 1 DAHP synthetase I family Fe-S_biosyn PF01521.20 gi|89256820|ref|YP_514182.1| - 3.3e-19 69.1 0.0 3.9e-19 68.9 0.0 1.0 1 0 0 1 1 1 1 Iron-sulphur cluster biosynthesis RNase_PH PF01138.21 gi|89256821|ref|YP_514183.1| - 5.7e-43 146.6 0.0 5.4e-22 78.7 0.0 2.8 3 0 0 3 3 3 2 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|89256821|ref|YP_514183.1| - 1.3e-22 79.6 0.2 1.7e-12 47.2 0.0 3.2 3 0 0 3 3 3 2 3' exoribonuclease family, domain 2 PNPase PF03726.14 gi|89256821|ref|YP_514183.1| - 4.5e-20 71.9 1.5 8.7e-20 71.0 0.1 2.3 2 0 0 2 2 2 1 Polyribonucleotide nucleotidyltransferase, RNA binding domain S1 PF00575.23 gi|89256821|ref|YP_514183.1| - 8.8e-08 32.4 0.2 2.8e-07 30.8 0.2 1.9 1 0 0 1 1 1 1 S1 RNA binding domain KH_1 PF00013.29 gi|89256821|ref|YP_514183.1| - 5.7e-07 29.3 0.7 5.7e-07 29.3 0.7 2.1 2 0 0 2 2 2 1 KH domain KH_2 PF07650.17 gi|89256821|ref|YP_514183.1| - 0.0048 16.7 1.7 0.017 14.9 1.7 2.1 1 0 0 1 1 1 1 KH domain UME PF08064.13 gi|89256821|ref|YP_514183.1| - 0.13 12.2 0.4 15 5.6 0.0 2.5 2 0 0 2 2 2 0 UME (NUC010) domain Ribosomal_S15 PF00312.22 gi|89256822|ref|YP_514184.1| - 5.9e-37 125.7 3.9 6.7e-37 125.6 3.9 1.0 1 0 0 1 1 1 1 Ribosomal protein S15 Transpeptidase PF00905.22 gi|89256823|ref|YP_514185.1| - 3.9e-64 216.8 0.0 4.9e-64 216.4 0.0 1.1 1 0 0 1 1 1 1 Penicillin binding protein transpeptidase domain PBP_dimer PF03717.15 gi|89256823|ref|YP_514185.1| - 3e-18 66.8 0.7 1.4e-16 61.4 0.7 2.4 1 1 0 1 1 1 1 Penicillin-binding Protein dimerisation domain FtsL PF04999.13 gi|89256824|ref|YP_514186.1| - 8e-12 45.0 0.3 9.7e-12 44.7 0.3 1.2 1 0 0 1 1 1 1 Cell division protein FtsL SAT PF16073.5 gi|89256824|ref|YP_514186.1| - 0.077 12.7 0.1 0.11 12.2 0.1 1.3 1 1 0 1 1 1 0 Starter unit:ACP transacylase in aflatoxin biosynthesis Methyltransf_5 PF01795.19 gi|89256825|ref|YP_514187.1| - 2.6e-99 332.6 0.6 2.9e-99 332.5 0.6 1.0 1 0 0 1 1 1 1 MraW methylase family Methyltransf_31 PF13847.6 gi|89256825|ref|YP_514187.1| - 2.7e-06 27.3 1.3 0.00028 20.7 1.3 2.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|89256825|ref|YP_514187.1| - 0.00079 20.1 0.0 0.065 13.9 0.0 2.4 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|89256825|ref|YP_514187.1| - 0.093 12.0 0.0 0.19 11.0 0.0 1.7 1 1 0 1 1 1 0 ubiE/COQ5 methyltransferase family Methyltransf_11 PF08241.12 gi|89256825|ref|YP_514187.1| - 0.1 13.2 0.0 28 5.5 0.0 2.5 2 0 0 2 2 2 0 Methyltransferase domain MTS PF05175.14 gi|89256825|ref|YP_514187.1| - 0.14 11.7 0.0 0.27 10.8 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase small domain AAA_23 PF13476.6 gi|89256825|ref|YP_514187.1| - 2.8 8.4 8.3 54 4.2 8.5 2.1 1 1 0 1 1 1 0 AAA domain AMP-binding PF00501.28 gi|89256826|ref|YP_514188.1| - 1.4e-68 231.4 0.0 2e-68 231.0 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme Fapy_DNA_glyco PF01149.24 gi|89256827|ref|YP_514189.1| - 1.7e-28 99.6 0.0 3.4e-28 98.6 0.0 1.5 1 0 0 1 1 1 1 Formamidopyrimidine-DNA glycosylase N-terminal domain H2TH PF06831.14 gi|89256827|ref|YP_514189.1| - 1.8e-27 95.1 0.3 4.1e-27 94.0 0.1 1.7 2 0 0 2 2 2 1 Formamidopyrimidine-DNA glycosylase H2TH domain zf-FPG_IleRS PF06827.14 gi|89256827|ref|YP_514189.1| - 1.8e-06 27.7 1.9 3.2e-06 26.9 1.9 1.4 1 0 0 1 1 1 1 Zinc finger found in FPG and IleRS FbpA PF05833.11 gi|89256827|ref|YP_514189.1| - 0.0052 15.6 0.1 0.0073 15.1 0.1 1.2 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) DUF4428 PF14471.6 gi|89256827|ref|YP_514189.1| - 0.12 12.3 2.6 0.32 11.0 2.6 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF4428) ATPase_2 PF01637.18 gi|89256827|ref|YP_514189.1| - 0.24 11.3 5.4 0.22 11.4 2.1 2.0 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea DDE_3 PF13358.6 gi|89256828|ref|YP_514190.1| - 9.9e-30 103.2 0.2 3.2e-29 101.6 0.0 1.8 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.16 gi|89256828|ref|YP_514190.1| - 0.0029 17.6 1.5 0.0084 16.2 0.6 2.3 2 1 0 2 2 2 1 Transposase HTH_29 PF13551.6 gi|89256828|ref|YP_514190.1| - 0.0033 17.4 0.0 0.008 16.2 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn helix HTH_40 PF14493.6 gi|89256828|ref|YP_514190.1| - 0.011 16.2 0.1 0.069 13.6 0.0 2.3 3 1 0 3 3 3 0 Helix-turn-helix domain HTH_28 PF13518.6 gi|89256828|ref|YP_514190.1| - 0.026 14.6 0.0 0.073 13.2 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain CENP-B_N PF04218.13 gi|89256828|ref|YP_514190.1| - 0.097 12.3 0.0 0.98 9.1 0.0 2.5 3 0 0 3 3 3 0 CENP-B N-terminal DNA-binding domain HTH_23 PF13384.6 gi|89256828|ref|YP_514190.1| - 0.12 12.2 0.0 0.34 10.8 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain rve PF00665.26 gi|89256828|ref|YP_514190.1| - 0.15 12.3 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 Integrase core domain DDE_Tnp_ISAZ013 PF07592.11 gi|89256828|ref|YP_514190.1| - 0.17 10.9 0.3 1.1 8.1 0.1 2.0 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain SNO PF01174.19 gi|89256829|ref|YP_514191.1| - 9.9e-49 165.7 0.0 1.1e-48 165.6 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family Peptidase_S51 PF03575.17 gi|89256829|ref|YP_514191.1| - 8.5e-06 25.6 0.0 1.2e-05 25.0 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S51 GATase_3 PF07685.14 gi|89256829|ref|YP_514191.1| - 4.3e-05 23.2 0.0 9e-05 22.2 0.0 1.6 1 1 1 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.28 gi|89256829|ref|YP_514191.1| - 0.0063 16.3 0.1 0.091 12.5 0.0 2.1 1 1 0 2 2 2 1 Glutamine amidotransferase class-I DJ-1_PfpI PF01965.24 gi|89256829|ref|YP_514191.1| - 0.025 14.4 0.0 0.05 13.4 0.0 1.5 1 1 0 1 1 1 0 DJ-1/PfpI family SOR_SNZ PF01680.17 gi|89256830|ref|YP_514192.1| - 1.2e-108 361.6 2.7 1.7e-108 361.1 2.7 1.2 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.14 gi|89256830|ref|YP_514192.1| - 2.6e-08 33.5 5.2 3e-06 26.7 0.2 2.5 2 1 0 2 2 2 2 Thiazole biosynthesis protein ThiG His_biosynth PF00977.21 gi|89256830|ref|YP_514192.1| - 0.002 17.6 0.3 0.029 13.8 0.0 2.2 2 0 0 2 2 2 1 Histidine biosynthesis protein NanE PF04131.14 gi|89256830|ref|YP_514192.1| - 0.0036 16.5 0.7 0.29 10.3 0.0 2.7 2 2 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase NMO PF03060.15 gi|89256830|ref|YP_514192.1| - 0.014 14.8 2.1 0.31 10.4 0.1 2.2 2 0 0 2 2 2 0 Nitronate monooxygenase Dus PF01207.17 gi|89256830|ref|YP_514192.1| - 0.018 14.2 0.1 6.5 5.8 0.0 2.7 2 2 0 2 2 2 0 Dihydrouridine synthase (Dus) IGPS PF00218.21 gi|89256830|ref|YP_514192.1| - 0.06 12.5 0.0 0.81 8.8 0.0 2.3 2 0 0 2 2 2 0 Indole-3-glycerol phosphate synthase DNA_gyraseB PF00204.25 gi|89256831|ref|YP_514193.1| - 1.9e-60 203.3 0.3 4.3e-60 202.1 0.3 1.6 1 0 0 1 1 1 1 DNA gyrase B DNA_gyraseB_C PF00986.21 gi|89256831|ref|YP_514193.1| - 2.6e-30 104.4 0.0 5.6e-30 103.3 0.0 1.6 1 0 0 1 1 1 1 DNA gyrase B subunit, carboxyl terminus GyrB_insert PF18053.1 gi|89256831|ref|YP_514193.1| - 9.6e-28 97.2 0.0 1.5e-27 96.5 0.0 1.3 1 0 0 1 1 1 1 DNA gyrase B subunit insert domain HATPase_c PF02518.26 gi|89256831|ref|YP_514193.1| - 3.7e-23 82.2 0.2 9.9e-23 80.8 0.2 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Toprim PF01751.22 gi|89256831|ref|YP_514193.1| - 5.5e-18 65.1 0.0 1.9e-17 63.4 0.0 2.0 1 0 0 1 1 1 1 Toprim domain HATPase_c_3 PF13589.6 gi|89256831|ref|YP_514193.1| - 0.00093 19.0 0.1 0.0022 17.8 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Dus PF01207.17 gi|89256833|ref|YP_514195.1| - 7.1e-81 271.7 0.0 8.5e-81 271.4 0.0 1.0 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) His_biosynth PF00977.21 gi|89256833|ref|YP_514195.1| - 0.00025 20.6 0.0 0.00071 19.1 0.0 1.6 1 1 0 1 1 1 1 Histidine biosynthesis protein ETC_C1_NDUFA5 PF04716.14 gi|89256833|ref|YP_514195.1| - 0.033 14.0 0.0 0.068 13.0 0.0 1.6 1 0 0 1 1 1 0 ETC complex I subunit conserved region Thioredoxin_4 PF13462.6 gi|89256834|ref|YP_514196.1| - 6.7e-14 52.4 0.4 1.3e-13 51.4 0.1 1.6 2 0 0 2 2 2 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|89256834|ref|YP_514196.1| - 0.00091 19.7 0.2 0.0023 18.4 0.1 1.7 1 1 0 1 1 1 1 Thioredoxin-like domain DSBA PF01323.20 gi|89256834|ref|YP_514196.1| - 0.013 15.3 4.4 0.073 12.8 1.7 2.4 2 1 0 2 2 2 0 DSBA-like thioredoxin domain Thioredoxin_8 PF13905.6 gi|89256834|ref|YP_514196.1| - 0.031 14.6 0.7 1.4 9.3 0.0 2.6 2 0 0 2 2 2 0 Thioredoxin-like LPAM_1 PF08139.12 gi|89256834|ref|YP_514196.1| - 0.27 11.8 2.2 0.6 10.7 2.2 1.6 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site DUF1993 PF09351.10 gi|89256836|ref|YP_514198.1| - 0.011 15.9 1.3 0.029 14.5 1.3 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF1993) DUF3487 PF11990.8 gi|89256836|ref|YP_514198.1| - 0.49 10.3 10.9 1 9.3 4.3 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3487) Antig_Caf1 PF09255.10 gi|89256836|ref|YP_514198.1| - 0.52 10.4 5.9 0.22 11.6 1.2 2.3 2 0 0 2 2 2 0 Caf1 Capsule antigen Mcm10 PF09332.11 gi|89256836|ref|YP_514198.1| - 4.2 6.7 11.0 0.88 8.9 3.3 2.1 2 0 0 2 2 2 0 Mcm10 replication factor ATP-grasp_2 PF08442.10 gi|89256837|ref|YP_514199.1| - 1.8e-79 266.0 0.4 1.8e-79 266.0 0.4 1.6 2 0 0 2 2 2 1 ATP-grasp domain Ligase_CoA PF00549.19 gi|89256837|ref|YP_514199.1| - 1.2e-26 93.3 2.0 1.2e-26 93.3 2.0 1.7 2 0 0 2 2 2 1 CoA-ligase ATP-grasp_5 PF13549.6 gi|89256837|ref|YP_514199.1| - 1.5e-11 44.2 0.8 1.3e-10 41.1 0.8 2.4 1 1 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.19 gi|89256837|ref|YP_514199.1| - 1.2e-05 25.1 1.6 2.1e-05 24.4 0.1 1.9 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp PF02222.22 gi|89256837|ref|YP_514199.1| - 0.046 13.3 0.1 0.17 11.5 0.1 1.9 2 0 0 2 2 2 0 ATP-grasp domain CoA_binding PF02629.19 gi|89256838|ref|YP_514200.1| - 1.7e-28 99.1 1.8 1.7e-28 99.1 1.8 2.2 2 1 0 2 2 2 1 CoA binding domain Ligase_CoA PF00549.19 gi|89256838|ref|YP_514200.1| - 5.1e-20 71.8 0.5 5.1e-20 71.8 0.5 1.6 2 0 0 2 2 2 1 CoA-ligase Succ_CoA_lig PF13607.6 gi|89256838|ref|YP_514200.1| - 6.7e-08 32.4 0.0 1.3e-07 31.5 0.0 1.4 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|89256838|ref|YP_514200.1| - 0.00016 22.1 0.0 0.00038 20.9 0.0 1.7 1 0 0 1 1 1 1 CoA binding domain UPF0154 PF03672.13 gi|89256839|ref|YP_514201.1| - 0.25 11.4 0.2 0.25 11.4 0.2 2.2 2 1 1 3 3 3 0 Uncharacterised protein family (UPF0154) Bacteriocin_IIc PF10439.9 gi|89256839|ref|YP_514201.1| - 0.67 10.1 12.9 1.1 9.4 7.1 2.2 2 0 0 2 2 2 0 Bacteriocin class II with double-glycine leader peptide AI-2E_transport PF01594.16 gi|89256840|ref|YP_514202.1| - 3.2e-37 128.4 44.4 4e-37 128.1 44.4 1.0 1 0 0 1 1 1 1 AI-2E family transporter Tmemb_9 PF05434.11 gi|89256840|ref|YP_514202.1| - 0.3 11.0 2.8 0.32 10.9 0.4 2.2 2 0 0 2 2 2 0 TMEM9 ATP-grasp_4 PF13535.6 gi|89256841|ref|YP_514203.1| - 3.9e-11 42.8 0.0 7.7e-11 41.8 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.6 gi|89256841|ref|YP_514203.1| - 1.5e-05 24.7 0.0 4.3e-05 23.3 0.0 1.7 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.14 gi|89256841|ref|YP_514203.1| - 0.003 17.6 0.0 0.0054 16.8 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain DUF2369 PF10179.9 gi|89256841|ref|YP_514203.1| - 0.07 13.5 0.0 0.16 12.3 0.0 1.6 1 0 0 1 1 1 0 Uncharacterised conserved protein (DUF2369) ATP-grasp_4 PF13535.6 gi|89256842|ref|YP_514204.1| - 0.067 12.8 0.0 0.17 11.5 0.0 1.7 1 0 0 1 1 1 0 ATP-grasp domain CutC PF03932.14 gi|89256843|ref|YP_514205.1| - 6.4e-61 205.4 0.3 8.1e-61 205.0 0.3 1.1 1 0 0 1 1 1 1 CutC family Aldolase PF01081.19 gi|89256843|ref|YP_514205.1| - 9.1e-06 25.2 0.0 1.8e-05 24.3 0.0 1.5 1 0 0 1 1 1 1 KDPG and KHG aldolase MFS_1 PF07690.16 gi|89256844|ref|YP_514206.1| - 4.1e-35 121.4 49.0 4.1e-35 121.4 49.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|89256844|ref|YP_514206.1| - 1.4e-08 34.0 16.0 1.4e-08 34.0 16.0 3.1 1 1 2 3 3 3 2 Sugar (and other) transporter MFS_4 PF06779.14 gi|89256844|ref|YP_514206.1| - 2.1e-08 33.9 38.5 2.9e-08 33.4 38.5 1.1 1 0 0 1 1 1 1 Uncharacterised MFS-type transporter YbfB DUF3989 PF13150.6 gi|89256844|ref|YP_514206.1| - 0.14 11.9 0.5 0.58 9.9 0.5 2.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3989) LysR_substrate PF03466.20 gi|89256845|ref|YP_514207.1| - 8.4e-26 90.6 0.0 1e-25 90.4 0.0 1.1 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 gi|89256845|ref|YP_514207.1| - 4.1e-15 55.5 0.0 7.8e-15 54.6 0.0 1.5 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family AATF-Che1 PF13339.6 gi|89256845|ref|YP_514207.1| - 0.11 13.1 0.4 0.26 12.0 0.4 1.7 1 1 0 1 1 1 0 Apoptosis antagonizing transcription factor DUF4298 PF14131.6 gi|89256845|ref|YP_514207.1| - 0.29 11.1 3.7 5 7.1 0.8 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4298) HAD_2 PF13419.6 gi|89256846|ref|YP_514208.1| - 4.7e-41 140.8 0.6 5.6e-41 140.6 0.6 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|89256846|ref|YP_514208.1| - 3.8e-22 79.6 0.2 1.1e-21 78.1 0.2 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|89256846|ref|YP_514208.1| - 7.1e-10 38.8 0.0 1.4e-09 37.9 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|89256846|ref|YP_514208.1| - 1.8e-06 28.5 0.0 4.2e-06 27.3 0.0 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|89256846|ref|YP_514208.1| - 9.4e-06 25.5 2.1 0.86 9.3 0.0 3.2 3 0 0 3 3 3 3 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|89256846|ref|YP_514208.1| - 0.00015 21.8 0.3 0.0015 18.6 0.3 2.5 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Acid_phosphat_B PF03767.14 gi|89256846|ref|YP_514208.1| - 0.011 15.3 0.9 0.078 12.6 0.0 2.2 2 0 0 2 2 2 0 HAD superfamily, subfamily IIIB (Acid phosphatase) 120_Rick_ant PF12574.8 gi|89256846|ref|YP_514208.1| - 0.015 14.5 0.0 0.024 13.8 0.0 1.3 1 0 0 1 1 1 0 120 KDa Rickettsia surface antigen Gag_p19 PF02228.16 gi|89256846|ref|YP_514208.1| - 0.042 14.3 0.0 0.13 12.7 0.0 1.8 1 1 1 2 2 2 0 Major core protein p19 DUF5007 PF16398.5 gi|89256846|ref|YP_514208.1| - 0.082 12.6 0.1 0.11 12.1 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5007) PLDc_2 PF13091.6 gi|89256847|ref|YP_514209.1| - 1e-37 129.0 10.7 2.5e-22 79.2 2.5 2.2 2 0 0 2 2 2 2 PLD-like domain PLDc PF00614.22 gi|89256847|ref|YP_514209.1| - 0.00072 19.6 6.2 0.18 12.0 0.6 3.2 3 0 0 3 3 3 2 Phospholipase D Active site motif Regulator_TrmB PF11495.8 gi|89256847|ref|YP_514209.1| - 0.0034 16.6 2.1 0.28 10.3 0.6 3.3 2 1 0 2 2 2 2 Archaeal transcriptional regulator TrmB Pyr_redox_2 PF07992.14 gi|89256848|ref|YP_514210.1| - 1.5e-55 188.5 3.6 1.8e-55 188.3 3.6 1.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|89256848|ref|YP_514210.1| - 3.5e-21 75.7 4.1 3.3e-18 66.0 0.4 2.1 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|89256848|ref|YP_514210.1| - 6.2e-19 68.3 2.1 1.2e-17 64.2 0.7 2.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|89256848|ref|YP_514210.1| - 2.7e-06 27.0 0.4 0.00022 20.7 0.0 2.7 3 0 0 3 3 3 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|89256848|ref|YP_514210.1| - 2.8e-06 26.7 7.9 0.00042 19.5 0.1 3.5 2 1 2 4 4 4 2 FAD binding domain GIDA PF01134.22 gi|89256848|ref|YP_514210.1| - 1.4e-05 24.4 9.0 0.024 13.8 0.0 4.7 3 1 2 5 5 5 2 Glucose inhibited division protein A HI0933_like PF03486.14 gi|89256848|ref|YP_514210.1| - 0.00011 21.1 3.5 0.071 11.8 0.1 3.8 3 1 1 4 4 4 1 HI0933-like protein DAO PF01266.24 gi|89256848|ref|YP_514210.1| - 0.00031 20.5 4.1 4 6.9 0.0 4.0 2 2 2 4 4 4 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|89256848|ref|YP_514210.1| - 0.00045 20.4 0.0 0.0054 16.9 0.0 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|89256848|ref|YP_514210.1| - 0.00079 18.7 1.2 0.029 13.6 0.0 2.8 2 1 1 3 3 3 1 Thi4 family K_oxygenase PF13434.6 gi|89256848|ref|YP_514210.1| - 0.0015 17.7 0.1 0.062 12.4 0.0 2.5 2 1 1 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_7 PF13241.6 gi|89256848|ref|YP_514210.1| - 0.0041 17.6 0.1 0.033 14.6 0.0 2.2 2 1 0 2 2 2 1 Putative NAD(P)-binding FAD_binding_3 PF01494.19 gi|89256848|ref|YP_514210.1| - 0.012 14.8 1.0 3.1 7.0 0.1 3.0 2 1 1 3 3 3 0 FAD binding domain Attacin_N PF03768.15 gi|89256848|ref|YP_514210.1| - 0.11 12.6 2.6 0.17 12.0 1.1 2.1 1 1 1 2 2 2 0 Attacin, N-terminal region DDE_Tnp_1_2 PF13586.6 gi|89256849|ref|YP_514211.1| - 5.2e-13 49.2 0.0 9.4e-13 48.4 0.0 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|89256849|ref|YP_514211.1| - 1.6e-11 44.2 2.4 3.9e-10 39.7 2.4 2.1 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 gi|89256849|ref|YP_514211.1| - 4e-08 33.4 0.0 5.7e-08 32.9 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF4096 PF13340.6 gi|89256849|ref|YP_514211.1| - 0.0062 16.7 0.0 0.012 15.8 0.0 1.5 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) MFS_1 PF07690.16 gi|89256850|ref|YP_514212.1| - 2.2e-11 43.3 19.3 2.6e-11 43.0 19.3 1.0 1 0 0 1 1 1 1 Major Facilitator Superfamily MFS_1 PF07690.16 gi|89256851|ref|YP_514213.1| - 0.00019 20.5 9.1 0.00024 20.2 9.1 1.1 1 0 0 1 1 1 1 Major Facilitator Superfamily ThiI PF02568.14 gi|89256851|ref|YP_514213.1| - 0.082 12.5 0.1 0.11 12.1 0.1 1.2 1 0 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) FtsX PF02687.21 gi|89256851|ref|YP_514213.1| - 0.096 13.2 18.9 3.4 8.2 18.9 2.2 1 1 0 1 1 1 0 FtsX-like permease family DUF1461 PF07314.11 gi|89256851|ref|YP_514213.1| - 0.8 9.6 9.6 0.88 9.4 4.4 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF1461) MFS_1 PF07690.16 gi|89256852|ref|YP_514214.1| - 2.8e-09 36.4 13.2 2.8e-09 36.4 13.2 2.2 1 1 0 2 2 2 1 Major Facilitator Superfamily MFS_3 PF05977.13 gi|89256852|ref|YP_514214.1| - 5.9e-05 21.7 0.4 5.9e-05 21.7 0.4 1.5 2 0 0 2 2 2 1 Transmembrane secretion effector MutL_C PF08676.11 gi|89256853|ref|YP_514215.1| - 8.8e-44 148.8 0.1 1.8e-43 147.8 0.1 1.6 1 0 0 1 1 1 1 MutL C terminal dimerisation domain DNA_mis_repair PF01119.19 gi|89256853|ref|YP_514215.1| - 9.4e-37 125.3 0.2 3e-36 123.7 0.0 2.0 2 0 0 2 2 2 1 DNA mismatch repair protein, C-terminal domain HATPase_c_3 PF13589.6 gi|89256853|ref|YP_514215.1| - 5.8e-15 55.3 1.7 7.7e-15 54.9 0.2 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.26 gi|89256853|ref|YP_514215.1| - 3.1e-07 30.9 0.1 3.1e-07 30.9 0.1 2.9 3 1 0 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF2147 PF09917.9 gi|89256854|ref|YP_514216.1| - 1.8e-11 44.7 1.2 2.6e-11 44.1 0.3 1.6 2 0 0 2 2 2 1 Uncharacterized protein conserved in bacteria (DUF2147) DUF2147 PF09917.9 gi|89256855|ref|YP_514217.1| - 0.054 14.1 0.1 0.076 13.7 0.1 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2147) DUF2147 PF09917.9 gi|89256856|ref|YP_514218.1| - 4.7e-05 24.0 0.7 0.0001 22.9 0.7 1.8 1 1 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2147) RsgA_GTPase PF03193.16 gi|89256857|ref|YP_514219.1| - 1.4e-48 165.0 0.2 1.9e-48 164.5 0.2 1.2 1 0 0 1 1 1 1 RsgA GTPase MMR_HSR1 PF01926.23 gi|89256857|ref|YP_514219.1| - 5e-07 29.8 0.3 3.6e-06 27.0 0.0 2.1 2 0 0 2 2 2 1 50S ribosome-binding GTPase GTP_EFTU PF00009.27 gi|89256857|ref|YP_514219.1| - 2.1e-06 27.4 1.3 0.00024 20.7 0.0 2.5 1 1 1 2 2 2 2 Elongation factor Tu GTP binding domain AIG1 PF04548.16 gi|89256857|ref|YP_514219.1| - 3e-06 26.7 1.0 7.3e-06 25.5 0.4 1.9 2 0 0 2 2 2 1 AIG1 family FeoB_N PF02421.18 gi|89256857|ref|YP_514219.1| - 0.00011 21.7 0.4 0.31 10.6 0.0 2.3 2 0 0 2 2 2 2 Ferrous iron transport protein B MMR_HSR1_Xtn PF16897.5 gi|89256857|ref|YP_514219.1| - 0.00097 19.1 2.7 0.0015 18.5 1.5 1.9 1 1 1 2 2 2 1 C-terminal region of MMR_HSR1 domain PduV-EutP PF10662.9 gi|89256857|ref|YP_514219.1| - 0.0023 17.7 6.9 0.0027 17.4 0.6 2.7 1 1 1 2 2 2 1 Ethanolamine utilisation - propanediol utilisation ABC_tran PF00005.27 gi|89256857|ref|YP_514219.1| - 0.012 16.1 1.3 0.074 13.6 0.4 2.1 2 0 0 2 2 2 0 ABC transporter Septin PF00735.18 gi|89256857|ref|YP_514219.1| - 0.03 13.6 0.2 0.03 13.6 0.2 1.6 2 0 0 2 2 2 0 Septin DUF3281 PF11685.8 gi|89256858|ref|YP_514220.1| - 7.9e-185 612.3 17.5 8.9e-185 612.1 17.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3281) Big_9 PF17963.1 gi|89256858|ref|YP_514220.1| - 3.6 8.4 14.6 7.8 7.3 6.4 2.7 1 1 1 2 2 2 0 Bacterial Ig domain SBP_bac_8 PF13416.6 gi|89256859|ref|YP_514221.1| - 4.6e-22 79.2 5.7 6.1e-22 78.7 5.7 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|89256859|ref|YP_514221.1| - 2.3e-19 69.8 1.7 3.1e-19 69.3 1.7 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|89256859|ref|YP_514221.1| - 3.7e-11 43.5 5.4 3.7e-11 43.5 5.4 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein AA_permease_2 PF13520.6 gi|89256860|ref|YP_514222.1| - 2.4e-52 178.2 65.6 3e-52 177.9 65.6 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|89256860|ref|YP_514222.1| - 4.1e-18 65.2 59.3 5e-18 65.0 59.3 1.0 1 0 0 1 1 1 1 Amino acid permease DUF4501 PF14946.6 gi|89256860|ref|YP_514222.1| - 1.2 9.2 3.3 0.92 9.6 0.0 2.4 1 1 2 3 3 3 0 Domain of unknown function (DUF4501) AI-2E_transport PF01594.16 gi|89256861|ref|YP_514223.1| - 1.3e-59 202.0 46.9 1.6e-59 201.7 46.9 1.0 1 0 0 1 1 1 1 AI-2E family transporter RecJ_OB PF17768.1 gi|89256862|ref|YP_514224.1| - 8.5e-21 74.2 1.4 3.2e-20 72.4 0.3 2.2 2 0 0 2 2 2 1 RecJ OB domain DHHA1 PF02272.19 gi|89256862|ref|YP_514224.1| - 4.1e-18 66.1 0.4 1.2e-17 64.7 0.4 1.8 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.20 gi|89256862|ref|YP_514224.1| - 1.8e-06 28.1 0.0 4.6e-06 26.8 0.0 1.7 1 0 0 1 1 1 1 DHH family BPL_LplA_LipB PF03099.19 gi|89256863|ref|YP_514225.1| - 1.4e-14 54.1 0.0 2.1e-14 53.5 0.0 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family BPL_C PF02237.17 gi|89256863|ref|YP_514225.1| - 0.014 15.3 0.0 0.038 13.9 0.0 1.8 1 0 0 1 1 1 0 Biotin protein ligase C terminal domain tRNA-synt_2 PF00152.20 gi|89256864|ref|YP_514226.1| - 9.1e-36 123.5 0.3 6e-35 120.8 0.3 1.8 1 1 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA-synt_2b PF00587.25 gi|89256864|ref|YP_514226.1| - 0.0043 17.0 0.1 0.0064 16.5 0.1 1.3 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) DUF3601 PF12208.8 gi|89256864|ref|YP_514226.1| - 0.028 14.5 0.1 0.074 13.2 0.1 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF3601) tRNA-synt_2d PF01409.20 gi|89256864|ref|YP_514226.1| - 0.031 13.8 0.0 6.6 6.1 0.0 2.3 2 0 0 2 2 2 0 tRNA synthetases class II core domain (F) MS_channel PF00924.18 gi|89256865|ref|YP_514227.1| - 5.2e-32 111.1 5.8 6.3e-32 110.8 5.8 1.1 1 0 0 1 1 1 1 Mechanosensitive ion channel DUF417 PF04224.12 gi|89256865|ref|YP_514227.1| - 0.013 15.0 0.0 0.022 14.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF417 DDE_Tnp_1_2 PF13586.6 gi|89256866|ref|YP_514228.1| - 1.2e-13 51.2 0.0 2.6e-13 50.2 0.0 1.6 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|89256866|ref|YP_514228.1| - 7.2e-12 45.4 2.0 6.2e-11 42.3 2.0 2.0 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 gi|89256866|ref|YP_514228.1| - 8e-08 32.4 1.2 1.4e-07 31.6 0.1 1.8 2 0 0 2 2 2 1 Transposase DDE domain DUF4096 PF13340.6 gi|89256866|ref|YP_514228.1| - 0.0069 16.6 0.0 0.014 15.6 0.0 1.6 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) MENTAL PF10457.9 gi|89256866|ref|YP_514228.1| - 0.23 11.2 3.9 0.38 10.6 3.9 1.3 1 0 0 1 1 1 0 Cholesterol-capturing domain HTH_25 PF13413.6 gi|89256867|ref|YP_514229.1| - 1.3e-07 31.4 0.2 2e-07 30.7 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain DUF4330 PF14221.6 gi|89256867|ref|YP_514229.1| - 0.019 15.2 4.6 0.031 14.5 4.6 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4330) HTH_19 PF12844.7 gi|89256867|ref|YP_514229.1| - 0.033 14.2 0.9 0.063 13.3 0.9 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_3 PF01381.22 gi|89256867|ref|YP_514229.1| - 0.091 12.8 0.1 0.21 11.7 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix HTH_31 PF13560.6 gi|89256867|ref|YP_514229.1| - 0.11 12.8 0.0 0.2 12.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Mucin PF01456.17 gi|89256867|ref|YP_514229.1| - 0.84 9.6 14.8 1.2 9.1 14.8 1.3 1 0 0 1 1 1 0 Mucin-like glycoprotein CPSase_L_D2 PF02786.17 gi|89256868|ref|YP_514230.1| - 6.4e-79 264.3 0.0 9.6e-79 263.8 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Biotin_carb_N PF00289.22 gi|89256868|ref|YP_514230.1| - 1.9e-47 160.4 0.1 4.2e-47 159.2 0.1 1.6 1 0 0 1 1 1 1 Biotin carboxylase, N-terminal domain Biotin_carb_C PF02785.19 gi|89256868|ref|YP_514230.1| - 3.3e-42 142.9 0.0 1.4e-41 141.0 0.0 2.1 2 0 0 2 2 2 1 Biotin carboxylase C-terminal domain Dala_Dala_lig_C PF07478.13 gi|89256868|ref|YP_514230.1| - 9.1e-12 44.9 0.0 1.9e-11 43.9 0.0 1.5 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp_3 PF02655.14 gi|89256868|ref|YP_514230.1| - 2.3e-08 34.3 0.1 4.1e-08 33.4 0.1 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp PF02222.22 gi|89256868|ref|YP_514230.1| - 3.7e-08 33.1 0.2 9.6e-08 31.8 0.1 1.7 2 0 0 2 2 2 1 ATP-grasp domain RimK PF08443.11 gi|89256868|ref|YP_514230.1| - 0.02 14.5 0.0 0.049 13.2 0.0 1.7 1 1 0 1 1 1 0 RimK-like ATP-grasp domain ATP-grasp_4 PF13535.6 gi|89256868|ref|YP_514230.1| - 0.07 12.7 0.0 0.23 11.0 0.0 2.1 1 1 0 1 1 1 0 ATP-grasp domain GARS_A PF01071.19 gi|89256868|ref|YP_514230.1| - 0.07 12.9 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Biotin_lipoyl PF00364.22 gi|89256869|ref|YP_514231.1| - 1.5e-22 79.2 2.4 1.6e-22 79.1 1.1 1.7 2 0 0 2 2 2 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 gi|89256869|ref|YP_514231.1| - 3.8e-09 36.2 1.1 1.4e-05 24.8 0.0 3.1 2 1 1 3 3 3 2 Biotin-lipoyl like GCV_H PF01597.19 gi|89256869|ref|YP_514231.1| - 0.00065 19.6 3.5 0.037 13.9 0.3 2.2 2 0 0 2 2 2 2 Glycine cleavage H-protein RnfC_N PF13375.6 gi|89256869|ref|YP_514231.1| - 0.0067 16.4 0.7 0.011 15.7 0.2 1.7 1 1 0 1 1 1 1 RnfC Barrel sandwich hybrid domain QRPTase_N PF02749.16 gi|89256869|ref|YP_514231.1| - 0.028 14.5 0.2 0.29 11.2 0.0 2.6 1 1 3 4 4 4 0 Quinolinate phosphoribosyl transferase, N-terminal domain ATP-synt_ab_Xtn PF16886.5 gi|89256869|ref|YP_514231.1| - 0.13 12.1 0.1 0.24 11.3 0.1 1.5 1 0 0 1 1 1 0 ATPsynthase alpha/beta subunit N-term extension YqfD PF06898.11 gi|89256869|ref|YP_514231.1| - 0.24 10.2 4.0 2.7 6.8 0.3 2.1 1 1 1 2 2 2 0 Putative stage IV sporulation protein YqfD DHquinase_II PF01220.19 gi|89256870|ref|YP_514232.1| - 1.8e-57 192.8 0.1 2.1e-57 192.6 0.1 1.0 1 0 0 1 1 1 1 Dehydroquinase class II Metallophos PF00149.28 gi|89256871|ref|YP_514233.1| - 7.2e-14 52.8 0.9 1.6e-13 51.6 0.8 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|89256871|ref|YP_514233.1| - 0.011 16.0 0.0 0.016 15.4 0.0 1.3 1 0 0 1 1 1 0 Calcineurin-like phosphoesterase superfamily domain RrnaAD PF00398.20 gi|89256872|ref|YP_514234.1| - 6.2e-67 225.4 2.5 7e-67 225.3 2.5 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_23 PF13489.6 gi|89256872|ref|YP_514234.1| - 0.0011 18.9 0.0 0.0015 18.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|89256872|ref|YP_514234.1| - 0.028 15.1 0.0 0.048 14.4 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain MSV199 PF10553.9 gi|89256872|ref|YP_514234.1| - 0.059 13.6 0.4 6.8 7.0 0.0 3.3 3 0 0 3 3 3 0 MSV199 domain Methyltransf_PK PF05891.12 gi|89256872|ref|YP_514234.1| - 0.076 12.5 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 AdoMet dependent proline di-methyltransferase SurA_N PF09312.11 gi|89256873|ref|YP_514235.1| - 1.4e-20 73.5 4.1 1.4e-20 73.5 4.1 2.1 2 0 0 2 2 2 1 SurA N-terminal domain SurA_N_3 PF13624.6 gi|89256873|ref|YP_514235.1| - 9.1e-16 58.1 4.1 9.1e-16 58.1 4.1 2.9 2 1 1 3 3 3 2 SurA N-terminal domain Rotamase PF00639.21 gi|89256873|ref|YP_514235.1| - 2.4e-10 41.2 4.2 3.9e-05 24.5 0.0 3.4 4 0 0 4 4 4 2 PPIC-type PPIASE domain SurA_N_2 PF13623.6 gi|89256873|ref|YP_514235.1| - 6.4e-09 35.8 7.2 1.6e-08 34.5 0.7 2.7 1 1 1 2 2 2 1 SurA N-terminal domain Rotamase_2 PF13145.6 gi|89256873|ref|YP_514235.1| - 1.2e-08 35.8 10.8 7.9e-05 23.5 0.3 3.6 3 1 1 4 4 4 2 PPIC-type PPIASE domain Rotamase_3 PF13616.6 gi|89256873|ref|YP_514235.1| - 4.1e-05 24.1 3.3 0.091 13.3 0.3 3.0 2 1 1 3 3 3 2 PPIC-type PPIASE domain Trigger_C PF05698.14 gi|89256873|ref|YP_514235.1| - 0.051 13.6 0.4 0.051 13.6 0.4 3.2 2 1 1 3 3 3 0 Bacterial trigger factor protein (TF) C-terminus LPD5 PF18799.1 gi|89256873|ref|YP_514235.1| - 7.8 6.9 7.2 1.6 9.1 1.5 2.3 2 0 0 2 2 2 0 Large polyvalent protein-associated domain 5 LptD PF04453.14 gi|89256874|ref|YP_514236.1| - 2.1e-82 277.4 31.8 3.7e-82 276.6 31.8 1.5 1 0 0 1 1 1 1 LPS transport system D OstA PF03968.14 gi|89256874|ref|YP_514236.1| - 7.4e-07 29.4 3.3 7.7e-06 26.1 0.4 2.9 2 1 0 2 2 2 1 OstA-like protein tRNA-synt_1d PF00750.19 gi|89256875|ref|YP_514237.1| - 6.4e-77 258.8 1.6 9.4e-77 258.3 0.1 1.8 2 0 0 2 2 2 1 tRNA synthetases class I (R) DALR_1 PF05746.15 gi|89256875|ref|YP_514237.1| - 3e-27 95.2 0.3 8.6e-27 93.7 0.3 1.8 1 0 0 1 1 1 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.16 gi|89256875|ref|YP_514237.1| - 8.7e-23 80.7 1.6 2.3e-22 79.4 0.3 2.3 2 0 0 2 2 2 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1g PF09334.11 gi|89256875|ref|YP_514237.1| - 0.0018 17.1 0.0 0.22 10.2 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|89256875|ref|YP_514237.1| - 0.0085 15.5 1.1 0.095 12.0 0.0 3.0 2 1 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain YL1_C PF08265.11 gi|89256876|ref|YP_514238.1| - 0.11 12.3 0.1 0.22 11.3 0.1 1.5 1 0 0 1 1 1 0 YL1 nuclear protein C-terminal domain Asparaginase PF00710.20 gi|89256877|ref|YP_514239.1| - 5.3e-47 159.8 0.5 8.8e-47 159.1 0.5 1.3 1 0 0 1 1 1 1 Asparaginase, N-terminal Asparaginase_C PF17763.1 gi|89256877|ref|YP_514239.1| - 7.3e-23 81.0 0.0 2.5e-22 79.2 0.0 1.9 2 0 0 2 2 2 1 Glutaminase/Asparaginase C-terminal domain Peptidase_S66 PF02016.15 gi|89256877|ref|YP_514239.1| - 0.1 12.7 0.0 0.27 11.4 0.0 1.7 1 0 0 1 1 1 0 LD-carboxypeptidase N-terminal domain SpoU_methylase PF00588.19 gi|89256878|ref|YP_514240.1| - 1.5e-35 122.5 0.0 1.7e-35 122.3 0.0 1.0 1 0 0 1 1 1 1 SpoU rRNA Methylase family Malate_DH PF12434.8 gi|89256878|ref|YP_514240.1| - 0.0053 16.8 1.5 0.0074 16.3 0.1 1.9 2 0 0 2 2 2 1 Malate dehydrogenase enzyme ALAD PF00490.21 gi|89256879|ref|YP_514241.1| - 6.7e-140 465.7 2.9 7.5e-140 465.6 2.9 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase CRS1_YhbY PF01985.21 gi|89256880|ref|YP_514242.1| - 1.6e-21 76.2 1.2 1.8e-21 76.1 1.2 1.0 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain SpecificRecomb PF10136.9 gi|89256880|ref|YP_514242.1| - 0.045 12.1 0.1 0.053 11.8 0.1 1.1 1 0 0 1 1 1 0 Site-specific recombinase DNA_pol3_delta2 PF13177.6 gi|89256881|ref|YP_514243.1| - 2.4e-23 82.7 4.0 5.1e-22 78.4 4.0 2.3 1 1 0 1 1 1 1 DNA polymerase III, delta subunit DNApol3-delta_C PF09115.10 gi|89256881|ref|YP_514243.1| - 2.3e-18 66.8 3.7 2.3e-18 66.8 3.7 1.9 2 0 0 2 2 2 1 DNA polymerase III, delta subunit, C terminal Alpha-2-MRAP_N PF06400.11 gi|89256881|ref|YP_514243.1| - 0.017 15.1 1.6 0.023 14.7 0.4 1.8 2 0 0 2 2 2 0 Alpha-2-macroglobulin RAP, N-terminal domain Asparaginase PF00710.20 gi|89256881|ref|YP_514243.1| - 0.057 13.0 0.0 0.13 11.8 0.0 1.6 2 0 0 2 2 2 0 Asparaginase, N-terminal Sipho_tail PF05709.11 gi|89256881|ref|YP_514243.1| - 0.21 11.0 1.3 0.32 10.4 0.1 1.8 2 0 0 2 2 2 0 Phage tail protein Hjc PF01870.18 gi|89256881|ref|YP_514243.1| - 0.21 11.6 2.1 0.51 10.4 0.1 2.4 3 0 0 3 3 3 0 Archaeal holliday junction resolvase (hjc) Peptidase_S49_N PF08496.10 gi|89256882|ref|YP_514244.1| - 2.5e-40 138.1 3.3 4.6e-40 137.2 3.3 1.5 1 0 0 1 1 1 1 Peptidase family S49 N-terminal Peptidase_S49 PF01343.18 gi|89256882|ref|YP_514244.1| - 2.7e-40 137.8 0.6 6.6e-40 136.6 0.0 1.8 2 0 0 2 2 2 1 Peptidase family S49 SLATT_5 PF18160.1 gi|89256882|ref|YP_514244.1| - 0.0051 16.2 0.7 0.011 15.1 0.7 1.5 1 0 0 1 1 1 1 SMODS and SLOG-associating 2TM effector domain family 5 CLP_protease PF00574.23 gi|89256882|ref|YP_514244.1| - 0.023 14.6 4.0 0.37 10.6 1.5 2.8 1 1 1 2 2 2 0 Clp protease SDH_sah PF01972.16 gi|89256882|ref|YP_514244.1| - 0.031 13.3 0.3 0.056 12.4 0.3 1.4 1 0 0 1 1 1 0 Serine dehydrogenase proteinase STAS PF01740.21 gi|89256882|ref|YP_514244.1| - 0.053 13.2 0.1 1 9.0 0.1 2.3 1 1 0 1 1 1 0 STAS domain HTH_34 PF13601.6 gi|89256882|ref|YP_514244.1| - 0.19 11.9 1.4 0.24 11.6 0.1 1.9 2 0 0 2 2 2 0 Winged helix DNA-binding domain GST_C PF00043.25 gi|89256883|ref|YP_514245.1| - 5.9e-10 39.2 0.0 8.4e-10 38.7 0.0 1.3 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_N_3 PF13417.6 gi|89256883|ref|YP_514245.1| - 6.1e-09 36.2 0.1 1.8e-08 34.7 0.0 1.7 2 0 0 2 2 2 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.6 gi|89256883|ref|YP_514245.1| - 2.6e-05 24.4 0.0 6.3e-05 23.2 0.0 1.7 2 0 0 2 2 2 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.24 gi|89256883|ref|YP_514245.1| - 0.00018 21.7 0.0 0.00036 20.7 0.0 1.5 1 0 0 1 1 1 1 Glutaredoxin GST_C_3 PF14497.6 gi|89256883|ref|YP_514245.1| - 0.0032 17.6 0.1 0.0057 16.8 0.1 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_N PF02798.20 gi|89256883|ref|YP_514245.1| - 0.01 16.1 0.0 0.021 15.2 0.0 1.6 1 0 0 1 1 1 0 Glutathione S-transferase, N-terminal domain GST_C_2 PF13410.6 gi|89256883|ref|YP_514245.1| - 0.048 13.7 0.0 0.11 12.6 0.0 1.6 1 1 0 1 1 1 0 Glutathione S-transferase, C-terminal domain DsrC PF04358.13 gi|89256884|ref|YP_514246.1| - 2.5e-35 121.2 0.0 2.7e-35 121.1 0.0 1.0 1 0 0 1 1 1 1 DsrC like protein Ribosomal_L12_N PF16320.5 gi|89256884|ref|YP_514246.1| - 0.12 12.1 0.4 0.28 10.9 0.0 1.7 2 0 0 2 2 2 0 Ribosomal protein L7/L12 dimerisation domain LexA_DNA_bind PF01726.16 gi|89256884|ref|YP_514246.1| - 0.14 11.9 0.0 0.21 11.4 0.0 1.3 1 0 0 1 1 1 0 LexA DNA binding domain Iron_traffic PF04362.14 gi|89256885|ref|YP_514247.1| - 1.8e-35 120.5 0.7 2.2e-35 120.2 0.7 1.0 1 0 0 1 1 1 1 Bacterial Fe(2+) trafficking PMT_2 PF13231.6 gi|89256886|ref|YP_514248.1| - 5.4e-19 69.0 21.6 5.4e-19 69.0 21.6 4.1 3 1 2 5 5 5 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.18 gi|89256886|ref|YP_514248.1| - 6.1e-14 52.2 19.9 6.1e-14 52.2 19.9 3.1 2 1 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Gasdermin_C PF17708.1 gi|89256886|ref|YP_514248.1| - 0.72 9.9 2.5 3.9 7.6 0.2 2.2 2 0 0 2 2 2 0 Gasdermin PUB domain DDE_3 PF13358.6 gi|89256887|ref|YP_514249.1| - 2.3e-30 105.3 0.1 7.9e-30 103.5 0.0 1.8 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.16 gi|89256887|ref|YP_514249.1| - 0.0029 17.6 1.5 0.0084 16.2 0.6 2.3 2 1 0 2 2 2 1 Transposase HTH_29 PF13551.6 gi|89256887|ref|YP_514249.1| - 0.0033 17.4 0.0 0.008 16.2 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn helix HTH_40 PF14493.6 gi|89256887|ref|YP_514249.1| - 0.0099 16.3 0.1 0.069 13.6 0.0 2.3 3 1 0 3 3 3 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|89256887|ref|YP_514249.1| - 0.026 14.6 0.0 0.073 13.2 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|89256887|ref|YP_514249.1| - 0.12 12.2 0.0 0.34 10.8 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain rve PF00665.26 gi|89256887|ref|YP_514249.1| - 0.15 12.3 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 Integrase core domain DDE_Tnp_ISAZ013 PF07592.11 gi|89256887|ref|YP_514249.1| - 0.17 10.9 0.3 1.1 8.1 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain Glycos_transf_2 PF00535.26 gi|89256888|ref|YP_514250.1| - 1.5e-23 83.5 0.0 2e-23 83.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|89256888|ref|YP_514250.1| - 0.008 16.1 0.0 0.012 15.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 NTP_transf_3 PF12804.7 gi|89256888|ref|YP_514250.1| - 0.0099 16.2 0.0 0.013 15.8 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Glyco_tranf_2_4 PF13704.6 gi|89256888|ref|YP_514250.1| - 0.056 14.0 0.0 0.098 13.2 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 2 YdjC PF04794.12 gi|89256889|ref|YP_514251.1| - 3e-53 181.2 0.0 3.4e-53 181.0 0.0 1.0 1 0 0 1 1 1 1 YdjC-like protein LZ3wCH PF18517.1 gi|89256889|ref|YP_514251.1| - 0.074 13.2 0.2 0.22 11.7 0.2 1.7 1 0 0 1 1 1 0 Leucine zipper with capping helix domain FTSW_RODA_SPOVE PF01098.19 gi|89256890|ref|YP_514252.1| - 6.6e-103 344.4 32.1 7.9e-103 344.2 32.1 1.0 1 0 0 1 1 1 1 Cell cycle protein COX2-transmemb PF09125.10 gi|89256890|ref|YP_514252.1| - 6.1 6.7 9.3 2 8.3 0.0 3.6 3 0 0 3 3 3 0 Cytochrome C oxidase subunit II, transmembrane Mur_ligase_M PF08245.12 gi|89256891|ref|YP_514253.1| - 3.8e-22 79.2 0.0 3.7e-19 69.5 0.0 2.4 1 1 1 2 2 2 2 Mur ligase middle domain Mur_ligase_C PF02875.21 gi|89256891|ref|YP_514253.1| - 6.5e-07 29.5 0.0 1.6e-06 28.3 0.0 1.6 1 0 0 1 1 1 1 Mur ligase family, glutamate ligase domain Glycos_transf_4 PF00953.21 gi|89256892|ref|YP_514254.1| - 1e-33 116.6 19.9 1e-33 116.6 19.9 2.4 3 1 0 3 3 3 1 Glycosyl transferase family 4 MraY_sig1 PF10555.9 gi|89256892|ref|YP_514254.1| - 1.4e-05 24.4 0.2 1.4e-05 24.4 0.2 2.5 2 0 0 2 2 2 1 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 MRAP PF15183.6 gi|89256892|ref|YP_514254.1| - 0.19 11.7 0.1 0.19 11.7 0.1 4.4 3 1 1 4 4 4 0 Melanocortin-2 receptor accessory protein family PEPCK_ATP PF01293.20 gi|89256893|ref|YP_514255.1| - 5.1e-137 457.3 0.7 5.9e-137 457.1 0.7 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxykinase AAA_29 PF13555.6 gi|89256893|ref|YP_514255.1| - 0.067 12.9 0.0 0.2 11.4 0.0 1.8 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|89256893|ref|YP_514255.1| - 0.094 13.0 0.0 0.23 11.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|89256893|ref|YP_514255.1| - 0.12 12.5 0.0 0.34 11.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|89256893|ref|YP_514255.1| - 0.24 11.9 4.4 0.43 11.1 0.1 2.8 3 0 0 3 3 3 0 AAA domain tRNA-synt_1c PF00749.21 gi|89256894|ref|YP_514256.1| - 4.9e-112 373.9 0.0 6.2e-112 373.5 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.18 gi|89256894|ref|YP_514256.1| - 1.4e-50 171.6 0.1 2.5e-50 170.7 0.1 1.5 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain LRRC37AB_C PF14914.6 gi|89256894|ref|YP_514256.1| - 0.06 13.3 0.0 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 LRRC37A/B like protein 1 C-terminal domain PMT_2 PF13231.6 gi|89256895|ref|YP_514257.1| - 1.3e-26 93.7 17.1 1.3e-26 93.7 17.1 1.6 2 0 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PTR2 PF00854.21 gi|89256897|ref|YP_514259.1| - 0.0042 16.0 1.1 0.0074 15.2 1.1 1.4 1 0 0 1 1 1 1 POT family MFS_1 PF07690.16 gi|89256897|ref|YP_514259.1| - 0.017 14.1 13.2 0.018 14.0 12.8 1.3 1 1 0 1 1 1 0 Major Facilitator Superfamily SPC12 PF06645.13 gi|89256897|ref|YP_514259.1| - 2 8.6 8.8 4.6 7.4 1.1 2.8 2 1 1 3 3 3 0 Microsomal signal peptidase 12 kDa subunit (SPC12) ABC_tran PF00005.27 gi|89256898|ref|YP_514260.1| - 1.1e-51 174.9 12.0 1.8e-26 93.3 0.0 4.1 4 0 0 4 4 4 2 ABC transporter AAA_21 PF13304.6 gi|89256898|ref|YP_514260.1| - 6.3e-19 68.9 18.4 0.00021 21.2 0.0 5.2 3 1 2 5 5 5 4 AAA domain, putative AbiEii toxin, Type IV TA system ABC_tran_CTD PF16326.5 gi|89256898|ref|YP_514260.1| - 1.5e-16 60.4 12.9 1.5e-16 60.4 12.9 2.0 2 0 0 2 2 1 1 ABC transporter C-terminal domain ABC_tran_Xtn PF12848.7 gi|89256898|ref|YP_514260.1| - 7.3e-12 45.1 23.3 2.3e-11 43.6 5.3 3.8 2 1 0 2 2 2 1 ABC transporter SMC_N PF02463.19 gi|89256898|ref|YP_514260.1| - 5e-11 42.5 16.0 3.5e-08 33.2 0.6 4.5 3 2 0 3 3 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|89256898|ref|YP_514260.1| - 1.8e-07 30.8 0.5 0.014 15.1 0.1 2.6 2 0 0 2 2 2 2 P-loop containing region of AAA domain ATP-synt_ab PF00006.25 gi|89256898|ref|YP_514260.1| - 2.2e-06 27.5 0.2 0.059 13.0 0.1 2.3 2 0 0 2 2 2 2 ATP synthase alpha/beta family, nucleotide-binding domain AAA_16 PF13191.6 gi|89256898|ref|YP_514260.1| - 6.3e-06 26.7 0.1 0.018 15.5 0.0 2.8 2 1 0 2 2 2 2 AAA ATPase domain RsgA_GTPase PF03193.16 gi|89256898|ref|YP_514260.1| - 6.5e-06 26.1 8.3 0.0087 16.0 0.0 3.4 3 0 0 3 3 3 2 RsgA GTPase MMR_HSR1 PF01926.23 gi|89256898|ref|YP_514260.1| - 1.3e-05 25.2 1.2 0.12 12.4 0.0 3.3 3 0 0 3 3 2 2 50S ribosome-binding GTPase AAA_22 PF13401.6 gi|89256898|ref|YP_514260.1| - 5.1e-05 23.6 8.1 0.079 13.2 0.6 4.4 3 2 0 3 3 3 2 AAA domain AAA_28 PF13521.6 gi|89256898|ref|YP_514260.1| - 5.9e-05 23.4 0.2 0.13 12.5 0.0 3.0 3 0 0 3 3 2 2 AAA domain NACHT PF05729.12 gi|89256898|ref|YP_514260.1| - 0.00028 20.8 0.9 0.16 11.8 0.1 2.7 2 0 0 2 2 2 1 NACHT domain PduV-EutP PF10662.9 gi|89256898|ref|YP_514260.1| - 0.00031 20.5 0.4 0.46 10.2 0.1 2.8 2 0 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation Roc PF08477.13 gi|89256898|ref|YP_514260.1| - 0.00032 20.9 1.8 0.6 10.3 0.0 3.4 4 0 0 4 4 3 2 Ras of Complex, Roc, domain of DAPkinase AAA_25 PF13481.6 gi|89256898|ref|YP_514260.1| - 0.00054 19.6 0.0 2.6 7.6 0.0 4.1 5 0 0 5 5 4 1 AAA domain AAA_24 PF13479.6 gi|89256898|ref|YP_514260.1| - 0.00065 19.5 7.1 0.14 11.9 0.0 3.7 4 1 0 4 4 3 2 AAA domain Dynamin_N PF00350.23 gi|89256898|ref|YP_514260.1| - 0.0007 19.7 10.3 0.4 10.7 3.5 3.8 2 2 0 2 2 2 2 Dynamin family AAA_23 PF13476.6 gi|89256898|ref|YP_514260.1| - 0.0023 18.5 1.3 0.0023 18.5 1.3 4.9 3 2 0 4 4 3 2 AAA domain AAA_15 PF13175.6 gi|89256898|ref|YP_514260.1| - 0.0034 17.2 37.7 0.0035 17.1 0.7 4.4 2 1 1 4 4 4 2 AAA ATPase domain FeoB_N PF02421.18 gi|89256898|ref|YP_514260.1| - 0.0037 16.8 0.4 0.13 11.8 0.1 2.6 2 0 0 2 2 2 1 Ferrous iron transport protein B AAA_7 PF12775.7 gi|89256898|ref|YP_514260.1| - 0.0039 16.7 1.0 2.4 7.6 0.0 2.8 3 0 0 3 3 3 1 P-loop containing dynein motor region T2SSE PF00437.20 gi|89256898|ref|YP_514260.1| - 0.004 16.3 1.2 0.013 14.6 0.2 2.1 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_5 PF07728.14 gi|89256898|ref|YP_514260.1| - 0.0053 16.8 0.0 1.8 8.5 0.0 3.2 3 0 0 3 3 2 1 AAA domain (dynein-related subfamily) Nop25 PF09805.9 gi|89256898|ref|YP_514260.1| - 0.0078 16.7 1.3 0.0078 16.7 1.3 2.3 2 0 0 2 2 1 1 Nucleolar protein 12 (25kDa) IstB_IS21 PF01695.17 gi|89256898|ref|YP_514260.1| - 0.0081 15.9 0.0 5.9 6.6 0.0 2.8 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA PF00004.29 gi|89256898|ref|YP_514260.1| - 0.0091 16.4 2.3 4.7 7.7 0.0 3.7 3 1 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.22 gi|89256898|ref|YP_514260.1| - 0.0095 16.3 0.0 7.3 7.0 0.0 2.9 2 0 0 2 2 2 0 RNA helicase AAA_30 PF13604.6 gi|89256898|ref|YP_514260.1| - 0.017 14.9 0.0 3.9 7.2 0.0 2.6 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 gi|89256898|ref|YP_514260.1| - 0.037 13.4 0.1 5.8 6.2 0.0 2.6 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI Ras PF00071.22 gi|89256898|ref|YP_514260.1| - 0.04 13.5 1.9 1.5 8.4 0.0 2.9 3 0 0 3 3 3 0 Ras family SRP54 PF00448.22 gi|89256898|ref|YP_514260.1| - 0.04 13.5 0.1 0.24 11.0 0.0 2.2 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain cobW PF02492.19 gi|89256898|ref|YP_514260.1| - 0.062 12.9 0.4 2.9 7.4 0.0 3.2 3 0 0 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain TsaE PF02367.17 gi|89256898|ref|YP_514260.1| - 0.069 13.1 0.1 8 6.5 0.0 2.7 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Strep_SA_rep PF06696.11 gi|89256898|ref|YP_514260.1| - 0.1 12.6 0.9 0.29 11.2 0.9 1.8 1 0 0 1 1 1 0 Streptococcal surface antigen repeat AAA_19 PF13245.6 gi|89256898|ref|YP_514260.1| - 0.12 12.7 1.6 5.8 7.3 0.2 3.1 3 1 0 3 3 3 0 AAA domain Prefoldin PF02996.17 gi|89256898|ref|YP_514260.1| - 0.38 10.7 10.7 1.7 8.5 2.4 3.6 2 1 1 3 3 3 0 Prefoldin subunit AAA_14 PF13173.6 gi|89256898|ref|YP_514260.1| - 0.72 9.9 4.6 1.2 9.2 0.0 3.6 5 0 0 5 5 4 0 AAA domain AAA_18 PF13238.6 gi|89256898|ref|YP_514260.1| - 1.1 9.8 7.1 20 5.7 0.0 4.0 4 1 0 4 4 4 0 AAA domain AAA_33 PF13671.6 gi|89256898|ref|YP_514260.1| - 1.1 9.4 5.9 6.5 6.9 0.0 3.7 4 0 0 4 4 3 0 AAA domain AAA_11 PF13086.6 gi|89256898|ref|YP_514260.1| - 3.6 7.3 10.7 0.88 9.3 0.5 3.1 3 0 0 3 3 3 0 AAA domain FlaC_arch PF05377.11 gi|89256898|ref|YP_514260.1| - 8.5 6.9 7.8 18 5.8 2.6 3.3 2 1 0 2 2 1 0 Flagella accessory protein C (FlaC) MFS_1 PF07690.16 gi|89256899|ref|YP_514261.1| - 4.6e-35 121.2 41.5 4.6e-35 121.2 41.5 1.6 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|89256899|ref|YP_514261.1| - 1.2e-10 40.9 11.7 1.2e-10 40.9 11.7 2.4 2 1 0 2 2 2 1 Sugar (and other) transporter MFS_2 PF13347.6 gi|89256899|ref|YP_514261.1| - 1.9e-07 30.0 30.4 4.3e-05 22.2 20.5 2.2 1 1 1 2 2 2 2 MFS/sugar transport protein FUSC PF04632.12 gi|89256900|ref|YP_514262.1| - 2.8e-25 89.0 0.8 3.4e-25 88.7 0.8 1.1 1 0 0 1 1 1 1 Fusaric acid resistance protein family FUSC_2 PF13515.6 gi|89256900|ref|YP_514262.1| - 1.3e-16 60.8 16.2 1.3e-16 60.8 16.2 1.9 1 1 1 2 2 2 1 Fusaric acid resistance protein-like ALMT PF11744.8 gi|89256900|ref|YP_514262.1| - 2.2e-12 46.6 12.4 3.3e-12 46.0 12.4 1.4 1 1 0 1 1 1 1 Aluminium activated malate transporter ArAE_1 PF06081.11 gi|89256900|ref|YP_514262.1| - 2.9e-05 24.2 18.0 6.5e-05 23.1 18.0 1.6 1 1 0 1 1 1 1 Aromatic acid exporter family member 1 Transgly_assoc PF04226.13 gi|89256900|ref|YP_514262.1| - 0.01 16.1 3.0 0.15 12.3 0.5 2.7 2 0 0 2 2 2 0 Transglycosylase associated protein MFS_1 PF07690.16 gi|89256901|ref|YP_514263.1| - 6.2e-38 130.6 29.9 6.2e-38 130.6 29.9 1.4 1 1 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|89256901|ref|YP_514263.1| - 2.1e-06 26.9 8.5 2.1e-06 26.9 8.5 2.9 1 1 1 2 2 2 1 Sugar (and other) transporter MFS_4 PF06779.14 gi|89256901|ref|YP_514263.1| - 0.029 13.7 13.0 0.094 12.0 12.8 2.0 1 1 0 1 1 1 0 Uncharacterised MFS-type transporter YbfB DUF1275 PF06912.11 gi|89256902|ref|YP_514264.1| - 1.7e-13 50.9 16.0 2e-13 50.7 16.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1275) SpoU_methylase PF00588.19 gi|89256903|ref|YP_514265.1| - 1.4e-06 28.6 0.0 1.8e-06 28.2 0.0 1.1 1 0 0 1 1 1 1 SpoU rRNA Methylase family DDE_3 PF13358.6 gi|89256904|ref|YP_514266.1| - 2.3e-30 105.3 0.1 7.9e-30 103.5 0.0 1.8 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.16 gi|89256904|ref|YP_514266.1| - 0.0029 17.6 1.5 0.0084 16.2 0.6 2.3 2 1 0 2 2 2 1 Transposase HTH_29 PF13551.6 gi|89256904|ref|YP_514266.1| - 0.0033 17.4 0.0 0.008 16.2 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn helix HTH_40 PF14493.6 gi|89256904|ref|YP_514266.1| - 0.0099 16.3 0.1 0.069 13.6 0.0 2.3 3 1 0 3 3 3 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|89256904|ref|YP_514266.1| - 0.026 14.6 0.0 0.073 13.2 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|89256904|ref|YP_514266.1| - 0.12 12.2 0.0 0.34 10.8 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain rve PF00665.26 gi|89256904|ref|YP_514266.1| - 0.15 12.3 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 Integrase core domain DDE_Tnp_ISAZ013 PF07592.11 gi|89256904|ref|YP_514266.1| - 0.17 10.9 0.3 1.1 8.1 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain Wzz PF02706.15 gi|89256905|ref|YP_514267.1| - 0.71 10.2 3.9 0.48 10.8 0.8 2.3 2 1 0 2 2 2 0 Chain length determinant protein DUF1108 PF06531.11 gi|89256906|ref|YP_514268.1| - 0.057 13.7 0.6 0.15 12.4 0.6 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1108) DDE_3 PF13358.6 gi|89256907|ref|YP_514269.1| - 2.3e-30 105.3 0.1 7.9e-30 103.5 0.0 1.8 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.16 gi|89256907|ref|YP_514269.1| - 0.0029 17.6 1.5 0.0084 16.2 0.6 2.3 2 1 0 2 2 2 1 Transposase HTH_29 PF13551.6 gi|89256907|ref|YP_514269.1| - 0.0033 17.4 0.0 0.008 16.2 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn helix HTH_40 PF14493.6 gi|89256907|ref|YP_514269.1| - 0.0099 16.3 0.1 0.069 13.6 0.0 2.3 3 1 0 3 3 3 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|89256907|ref|YP_514269.1| - 0.026 14.6 0.0 0.073 13.2 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|89256907|ref|YP_514269.1| - 0.12 12.2 0.0 0.34 10.8 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain rve PF00665.26 gi|89256907|ref|YP_514269.1| - 0.15 12.3 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 Integrase core domain DDE_Tnp_ISAZ013 PF07592.11 gi|89256907|ref|YP_514269.1| - 0.17 10.9 0.3 1.1 8.1 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain DUF4521 PF15021.6 gi|89256909|ref|YP_514271.1| - 0.01 15.8 0.1 0.011 15.7 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF4521) HATPase_c_4 PF13749.6 gi|89256909|ref|YP_514271.1| - 0.12 12.6 0.0 0.16 12.2 0.0 1.2 1 0 0 1 1 1 0 Putative ATP-dependent DNA helicase recG C-terminal Big_6 PF17936.1 gi|89256910|ref|YP_514272.1| - 0.0013 19.0 0.4 0.0024 18.1 0.1 1.6 2 0 0 2 2 2 1 Bacterial Ig domain YkyA PF10368.9 gi|89256910|ref|YP_514272.1| - 0.01 15.5 0.4 0.02 14.6 0.4 1.4 1 0 0 1 1 1 0 Putative cell-wall binding lipoprotein CAP_C PF08603.11 gi|89256910|ref|YP_514272.1| - 0.083 12.5 3.3 0.12 12.0 3.3 1.3 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) C terminal LysR_substrate PF03466.20 gi|89256911|ref|YP_514273.1| - 3.2e-23 82.2 0.0 4e-17 62.3 0.0 2.1 2 0 0 2 2 2 2 LysR substrate binding domain HTH_1 PF00126.27 gi|89256911|ref|YP_514273.1| - 3.5e-14 52.5 0.0 7.5e-14 51.4 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family Toxin-deaminase PF14424.6 gi|89256911|ref|YP_514273.1| - 0.0075 16.4 0.1 0.017 15.2 0.1 1.5 1 0 0 1 1 1 1 The BURPS668_1122 family of deaminases CagZ PF09053.10 gi|89256911|ref|YP_514273.1| - 0.056 13.1 3.9 4.8 6.7 0.1 2.8 3 0 0 3 3 3 0 CagZ CBM_5_12 PF02839.14 gi|89256912|ref|YP_514274.1| - 3.4e-09 36.8 26.5 1.2e-05 25.6 2.4 4.1 3 0 0 3 3 3 2 Carbohydrate binding domain CBM_5_12_2 PF14600.6 gi|89256912|ref|YP_514274.1| - 0.0029 17.5 5.4 0.0029 17.5 5.4 3.5 2 1 1 3 3 3 2 Cellulose-binding domain Tmp39 PF10271.9 gi|89256912|ref|YP_514274.1| - 0.41 9.6 2.9 2.3 7.1 0.5 2.1 1 1 1 2 2 2 0 Putative transmembrane protein Glyco_hydro_18 PF00704.28 gi|89256913|ref|YP_514275.1| - 0.018 14.7 0.1 0.022 14.5 0.1 1.2 1 0 0 1 1 1 0 Glycosyl hydrolases family 18 MlaA PF04333.13 gi|89256914|ref|YP_514276.1| - 2.9e-55 187.0 1.0 4e-55 186.6 1.0 1.2 1 0 0 1 1 1 1 MlaA lipoprotein Methyltransf_23 PF13489.6 gi|89256915|ref|YP_514277.1| - 2.2e-22 79.6 0.0 2.8e-22 79.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|89256915|ref|YP_514277.1| - 2.6e-19 69.5 0.1 3.3e-19 69.2 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|89256915|ref|YP_514277.1| - 7.1e-19 68.2 0.0 1.1e-18 67.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|89256915|ref|YP_514277.1| - 2.9e-16 60.0 0.0 4.5e-16 59.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|89256915|ref|YP_514277.1| - 2.3e-14 53.9 0.0 4.3e-14 53.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|89256915|ref|YP_514277.1| - 1.6e-10 40.9 0.3 2.1e-10 40.5 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 gi|89256915|ref|YP_514277.1| - 1.9e-09 37.3 0.1 3.4e-09 36.5 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase small domain NodS PF05401.11 gi|89256915|ref|YP_514277.1| - 8e-08 32.1 0.0 1e-07 31.8 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_32 PF13679.6 gi|89256915|ref|YP_514277.1| - 2.1e-06 27.8 0.0 3.2e-06 27.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain DREV PF05219.12 gi|89256915|ref|YP_514277.1| - 6.4e-06 25.5 0.1 2.7e-05 23.4 0.1 1.7 1 1 1 2 2 2 1 DREV methyltransferase TehB PF03848.14 gi|89256915|ref|YP_514277.1| - 3e-05 23.5 0.2 4.5e-05 23.0 0.2 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB TPMT PF05724.11 gi|89256915|ref|YP_514277.1| - 0.0004 20.1 0.0 0.00059 19.6 0.0 1.2 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) Methyltransf_9 PF08003.11 gi|89256915|ref|YP_514277.1| - 0.00082 18.4 0.0 0.0011 18.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_18 PF12847.7 gi|89256915|ref|YP_514277.1| - 0.00084 19.3 0.0 0.0015 18.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|89256915|ref|YP_514277.1| - 0.0011 18.6 0.0 0.0016 18.1 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW GidB PF02527.15 gi|89256915|ref|YP_514277.1| - 0.012 14.9 0.0 0.018 14.4 0.0 1.2 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G Methyltransf_5 PF01795.19 gi|89256915|ref|YP_514277.1| - 0.05 13.1 0.1 0.076 12.5 0.1 1.3 1 0 0 1 1 1 0 MraW methylase family AdoMet_MTase PF07757.13 gi|89256915|ref|YP_514277.1| - 0.059 13.7 0.0 0.1 12.9 0.0 1.5 1 0 0 1 1 1 0 Predicted AdoMet-dependent methyltransferase DnaB_2 PF07261.11 gi|89256915|ref|YP_514277.1| - 0.067 12.9 0.4 0.27 11.0 0.0 2.3 3 0 0 3 3 3 0 Replication initiation and membrane attachment Peptidase_A21 PF03566.13 gi|89256916|ref|YP_514278.1| - 0.17 10.1 0.3 0.21 9.8 0.3 1.1 1 0 0 1 1 1 0 Peptidase family A21 LRRFIP PF09738.9 gi|89256916|ref|YP_514278.1| - 0.18 11.2 2.0 0.2 11.1 2.0 1.2 1 0 0 1 1 1 0 LRRFIP family TBPIP PF07106.13 gi|89256916|ref|YP_514278.1| - 0.34 10.9 4.6 0.78 9.7 0.4 2.8 2 1 1 3 3 3 0 TBPIP/Hop2 winged helix domain YabA PF06156.13 gi|89256916|ref|YP_514278.1| - 1.4 9.6 5.7 2.8 8.6 4.5 2.2 1 1 0 1 1 1 0 Initiation control protein YabA AA_permease_2 PF13520.6 gi|89256917|ref|YP_514279.1| - 8.5e-37 127.0 56.3 8.5e-37 127.0 56.3 2.4 1 1 2 3 3 3 1 Amino acid permease AA_permease PF00324.21 gi|89256917|ref|YP_514279.1| - 1.4e-20 73.4 47.0 1.4e-20 73.4 47.0 2.2 1 1 1 2 2 2 1 Amino acid permease DUF3767 PF12597.8 gi|89256917|ref|YP_514279.1| - 3.1 7.7 4.4 10 6.0 4.4 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF3767) DUF4282 PF14110.6 gi|89256918|ref|YP_514280.1| - 8.7e-09 36.0 10.1 6.5e-07 30.0 10.1 2.0 1 1 0 1 1 1 1 Domain of unknown function (DUF4282) ZYG-11_interact PF05884.12 gi|89256918|ref|YP_514280.1| - 0.011 15.1 4.0 0.012 15.1 4.0 1.0 1 0 0 1 1 1 0 Interactor of ZYG-11 DUF4481 PF14800.6 gi|89256918|ref|YP_514280.1| - 0.16 11.5 0.6 0.15 11.5 0.6 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4481) DUF1576 PF07613.11 gi|89256919|ref|YP_514281.1| - 0.021 14.3 3.8 0.024 14.2 3.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1576) APA3_viroporin PF11289.8 gi|89256919|ref|YP_514281.1| - 0.098 12.2 2.3 0.095 12.2 2.3 1.1 1 0 0 1 1 1 0 Coronavirus accessory protein 3a DDE_3 PF13358.6 gi|89256920|ref|YP_514282.1| - 2.3e-30 105.3 0.1 7.9e-30 103.5 0.0 1.8 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.16 gi|89256920|ref|YP_514282.1| - 0.0029 17.6 1.5 0.0084 16.2 0.6 2.3 2 1 0 2 2 2 1 Transposase HTH_29 PF13551.6 gi|89256920|ref|YP_514282.1| - 0.0033 17.4 0.0 0.008 16.2 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn helix HTH_40 PF14493.6 gi|89256920|ref|YP_514282.1| - 0.0099 16.3 0.1 0.069 13.6 0.0 2.3 3 1 0 3 3 3 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|89256920|ref|YP_514282.1| - 0.026 14.6 0.0 0.073 13.2 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|89256920|ref|YP_514282.1| - 0.12 12.2 0.0 0.34 10.8 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain rve PF00665.26 gi|89256920|ref|YP_514282.1| - 0.15 12.3 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 Integrase core domain DDE_Tnp_ISAZ013 PF07592.11 gi|89256920|ref|YP_514282.1| - 0.17 10.9 0.3 1.1 8.1 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain FGGY_N PF00370.21 gi|89256921|ref|YP_514283.1| - 7.8e-83 277.8 0.3 1.1e-82 277.3 0.3 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.16 gi|89256921|ref|YP_514283.1| - 1.4e-55 188.1 0.1 4.6e-55 186.4 0.0 1.8 2 0 0 2 2 2 1 FGGY family of carbohydrate kinases, C-terminal domain BcrAD_BadFG PF01869.20 gi|89256921|ref|YP_514283.1| - 0.00013 21.6 0.3 0.42 10.1 0.1 2.2 2 0 0 2 2 2 2 BadF/BadG/BcrA/BcrD ATPase family MFS_1 PF07690.16 gi|89256922|ref|YP_514284.1| - 1.6e-35 122.7 44.8 1.6e-28 99.7 16.3 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|89256922|ref|YP_514284.1| - 1e-05 24.7 12.8 1e-05 24.7 12.8 2.5 1 1 0 2 2 2 1 Sugar (and other) transporter MFS_2 PF13347.6 gi|89256922|ref|YP_514284.1| - 0.00026 19.7 14.1 0.00026 19.7 14.1 2.7 3 0 0 3 3 3 2 MFS/sugar transport protein OCRE PF17780.1 gi|89256923|ref|YP_514285.1| - 0.061 13.4 1.2 0.15 12.2 0.5 1.9 2 0 0 2 2 2 0 OCRE domain MFS_1 PF07690.16 gi|89256924|ref|YP_514286.1| - 4.7e-30 104.7 30.8 4.7e-30 104.7 30.8 1.5 1 1 0 1 1 1 1 Major Facilitator Superfamily TRI9 PF08195.11 gi|89256924|ref|YP_514286.1| - 0.039 13.8 0.1 0.1 12.5 0.1 1.6 1 0 0 1 1 1 0 TRI9 protein DUF1440 PF07274.12 gi|89256924|ref|YP_514286.1| - 4.3 7.7 8.1 3.3 8.1 0.3 3.4 2 1 1 3 3 3 0 Protein of unknown function (DUF1440) ABC_tran PF00005.27 gi|89256925|ref|YP_514287.1| - 2.1e-26 93.0 0.0 2.8e-26 92.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|89256925|ref|YP_514287.1| - 9.8e-08 32.4 0.0 2e-07 31.4 0.0 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region SMC_N PF02463.19 gi|89256925|ref|YP_514287.1| - 0.0001 21.8 0.2 0.00018 21.0 0.2 1.3 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|89256925|ref|YP_514287.1| - 0.0019 17.9 0.3 0.0041 16.8 0.3 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_21 PF13304.6 gi|89256925|ref|YP_514287.1| - 0.002 18.0 2.7 0.0043 16.9 0.1 2.0 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|89256925|ref|YP_514287.1| - 0.014 15.6 0.4 0.1 12.9 0.4 2.0 1 1 0 1 1 1 0 AAA domain DUF87 PF01935.17 gi|89256925|ref|YP_514287.1| - 0.023 14.8 0.3 0.049 13.7 0.3 1.5 1 0 0 1 1 1 0 Helicase HerA, central domain Pox_A32 PF04665.12 gi|89256925|ref|YP_514287.1| - 0.15 11.5 3.7 1.9 7.9 0.3 2.4 3 0 0 3 3 3 0 Poxvirus A32 protein SBP_bac_5 PF00496.22 gi|89256927|ref|YP_514289.1| - 1.3e-65 221.8 11.0 1.6e-65 221.6 11.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle DUF2066 PF09839.9 gi|89256927|ref|YP_514289.1| - 0.019 14.4 0.1 0.032 13.6 0.1 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2066) DUF4999 PF16390.5 gi|89256927|ref|YP_514289.1| - 0.17 12.2 0.9 11 6.4 0.3 2.7 2 0 0 2 2 2 0 Domain of unknown function DDE_Tnp_1_2 PF13586.6 gi|89256928|ref|YP_514290.1| - 1e-13 51.5 0.0 1.8e-13 50.7 0.0 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|89256928|ref|YP_514290.1| - 4.1e-12 46.2 2.0 3.8e-11 43.1 2.0 1.9 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 gi|89256928|ref|YP_514290.1| - 6.8e-08 32.7 0.0 9.5e-08 32.2 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.6 gi|89256928|ref|YP_514290.1| - 0.00017 21.3 0.2 0.00023 20.9 0.2 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease DUF4096 PF13340.6 gi|89256928|ref|YP_514290.1| - 0.0056 16.9 0.0 0.011 15.9 0.0 1.5 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) UvrD-helicase PF00580.21 gi|89256929|ref|YP_514291.1| - 1.3e-74 251.5 10.3 1.3e-74 251.5 10.3 3.0 2 2 1 3 3 3 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.6 gi|89256929|ref|YP_514291.1| - 7.2e-74 249.2 8.7 7.2e-74 249.2 8.7 2.4 2 0 0 2 2 2 1 UvrD-like helicase C-terminal domain AAA_19 PF13245.6 gi|89256929|ref|YP_514291.1| - 2.9e-31 108.8 0.1 8.1e-31 107.3 0.0 1.8 2 0 0 2 2 2 1 AAA domain UvrD_C_2 PF13538.6 gi|89256929|ref|YP_514291.1| - 1.1e-09 37.9 0.1 0.0012 18.6 0.0 2.6 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain AAA_30 PF13604.6 gi|89256929|ref|YP_514291.1| - 1.5e-07 31.3 0.2 0.00016 21.5 0.2 2.6 2 1 0 2 2 2 2 AAA domain Exonuc_V_gamma PF04257.14 gi|89256929|ref|YP_514291.1| - 4.7e-07 28.5 1.8 4.7e-07 28.5 1.8 1.7 2 0 0 2 2 2 1 Exodeoxyribonuclease V, gamma subunit AAA_12 PF13087.6 gi|89256929|ref|YP_514291.1| - 0.00063 19.4 1.6 0.24 11.0 0.1 3.4 2 1 0 2 2 2 1 AAA domain ResIII PF04851.15 gi|89256929|ref|YP_514291.1| - 0.00085 19.4 5.7 0.0096 15.9 5.7 2.6 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Viral_helicase1 PF01443.18 gi|89256929|ref|YP_514291.1| - 0.0033 17.2 2.9 3.9 7.1 0.1 4.1 3 1 0 3 3 3 1 Viral (Superfamily 1) RNA helicase AAA_14 PF13173.6 gi|89256929|ref|YP_514291.1| - 0.0083 16.2 3.6 0.91 9.6 1.6 3.1 2 0 0 2 2 2 1 AAA domain DEAD PF00270.29 gi|89256929|ref|YP_514291.1| - 0.017 14.9 0.1 0.13 12.0 0.1 2.7 1 1 0 1 1 1 0 DEAD/DEAH box helicase CarD_CdnL_TRCF PF02559.16 gi|89256929|ref|YP_514291.1| - 0.4 11.4 3.0 0.89 10.3 0.1 3.1 3 0 0 3 3 3 0 CarD-like/TRCF domain SRP54 PF00448.22 gi|89256930|ref|YP_514292.1| - 1.4e-74 250.0 4.1 2.1e-74 249.4 4.1 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.19 gi|89256930|ref|YP_514292.1| - 3.1e-12 46.5 2.5 4.7e-12 46.0 0.9 2.2 2 0 0 2 2 2 1 SRP54-type protein, helical bundle domain Zeta_toxin PF06414.12 gi|89256930|ref|YP_514292.1| - 1.8e-08 33.9 0.2 3.1e-08 33.1 0.2 1.3 1 0 0 1 1 1 1 Zeta toxin AAA_30 PF13604.6 gi|89256930|ref|YP_514292.1| - 2.3e-06 27.4 1.5 4.1e-06 26.6 1.5 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|89256930|ref|YP_514292.1| - 1.2e-05 25.6 0.3 6.1e-05 23.3 0.0 2.2 2 1 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|89256930|ref|YP_514292.1| - 1.7e-05 25.0 0.1 3.6e-05 23.9 0.1 1.6 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|89256930|ref|YP_514292.1| - 1.7e-05 25.2 1.4 3.8e-05 24.1 0.3 2.0 2 0 0 2 2 2 1 AAA domain APS_kinase PF01583.20 gi|89256930|ref|YP_514292.1| - 4.9e-05 23.3 0.3 0.00043 20.2 0.1 2.4 3 0 0 3 3 2 1 Adenylylsulphate kinase DUF2075 PF09848.9 gi|89256930|ref|YP_514292.1| - 0.00025 20.4 0.6 0.00038 19.8 0.6 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_19 PF13245.6 gi|89256930|ref|YP_514292.1| - 0.00028 21.2 0.5 0.00049 20.5 0.5 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|89256930|ref|YP_514292.1| - 0.0004 20.8 0.3 0.0013 19.2 0.1 1.9 1 1 1 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|89256930|ref|YP_514292.1| - 0.0017 18.8 0.3 0.0042 17.5 0.2 1.8 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.27 gi|89256930|ref|YP_514292.1| - 0.0022 18.5 0.1 0.0048 17.4 0.1 1.6 1 0 0 1 1 1 1 ABC transporter VirC1 PF07015.11 gi|89256930|ref|YP_514292.1| - 0.0026 17.1 0.0 0.0048 16.2 0.0 1.4 1 0 0 1 1 1 1 VirC1 protein CbiA PF01656.23 gi|89256930|ref|YP_514292.1| - 0.0027 17.7 0.7 0.012 15.6 0.7 2.2 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Thymidylate_kin PF02223.17 gi|89256930|ref|YP_514292.1| - 0.0029 17.3 0.2 0.0097 15.6 0.1 2.0 2 0 0 2 2 2 1 Thymidylate kinase MeaB PF03308.16 gi|89256930|ref|YP_514292.1| - 0.0035 16.3 0.4 0.0079 15.2 0.1 1.7 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB MMR_HSR1 PF01926.23 gi|89256930|ref|YP_514292.1| - 0.0053 16.8 4.1 0.0053 16.8 4.1 2.3 2 1 0 2 2 1 1 50S ribosome-binding GTPase AAA_31 PF13614.6 gi|89256930|ref|YP_514292.1| - 0.0054 16.7 0.8 0.0054 16.7 0.8 1.9 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|89256930|ref|YP_514292.1| - 0.006 17.1 0.1 0.016 15.7 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|89256930|ref|YP_514292.1| - 0.0066 16.2 0.2 0.016 14.9 0.2 1.8 1 1 0 1 1 1 1 AAA domain Septin PF00735.18 gi|89256930|ref|YP_514292.1| - 0.011 15.0 0.6 0.66 9.2 0.0 2.2 2 0 0 2 2 2 0 Septin AAA_14 PF13173.6 gi|89256930|ref|YP_514292.1| - 0.025 14.6 0.1 0.1 12.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|89256930|ref|YP_514292.1| - 0.03 13.8 0.1 0.075 12.5 0.1 1.7 1 0 0 1 1 1 0 P-loop containing dynein motor region Ploopntkinase3 PF18751.1 gi|89256930|ref|YP_514292.1| - 0.049 13.6 0.7 0.23 11.3 0.3 2.2 1 1 1 2 2 2 0 P-loop Nucleotide Kinase3 MobB PF03205.14 gi|89256930|ref|YP_514292.1| - 0.049 13.5 0.9 0.12 12.3 0.9 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ATPase_2 PF01637.18 gi|89256930|ref|YP_514292.1| - 0.055 13.4 0.3 0.055 13.4 0.3 2.0 2 2 0 2 2 2 0 ATPase domain predominantly from Archaea TrwB_AAD_bind PF10412.9 gi|89256930|ref|YP_514292.1| - 0.066 12.1 1.7 0.14 11.1 0.6 1.9 1 1 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain ATP_bind_1 PF03029.17 gi|89256930|ref|YP_514292.1| - 0.067 13.0 0.5 0.17 11.7 0.5 1.6 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_5 PF07728.14 gi|89256930|ref|YP_514292.1| - 0.069 13.2 1.3 0.52 10.3 0.1 2.4 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) ClpB_D2-small PF10431.9 gi|89256930|ref|YP_514292.1| - 0.083 13.0 0.2 0.26 11.4 0.2 1.8 1 0 0 1 1 1 0 C-terminal, D2-small domain, of ClpB protein ORC3_N PF07034.11 gi|89256930|ref|YP_514292.1| - 0.097 11.8 0.3 0.29 10.2 0.0 1.8 2 1 1 3 3 2 0 Origin recognition complex (ORC) subunit 3 N-terminus KTI12 PF08433.10 gi|89256930|ref|YP_514292.1| - 0.12 11.8 0.6 0.37 10.2 0.1 1.9 1 1 1 2 2 2 0 Chromatin associated protein KTI12 Fe-ADH_2 PF13685.6 gi|89256930|ref|YP_514292.1| - 0.15 11.7 3.0 0.23 11.2 0.4 2.3 2 1 1 3 3 3 0 Iron-containing alcohol dehydrogenase RNA_helicase PF00910.22 gi|89256930|ref|YP_514292.1| - 0.16 12.4 0.3 0.82 10.1 0.3 2.3 1 1 1 2 2 2 0 RNA helicase NB-ARC PF00931.22 gi|89256930|ref|YP_514292.1| - 0.16 11.1 2.8 0.81 8.8 0.6 2.7 2 1 0 3 3 3 0 NB-ARC domain NTPase_1 PF03266.15 gi|89256930|ref|YP_514292.1| - 0.18 11.7 9.5 0.077 12.9 2.4 2.9 2 1 0 3 3 3 0 NTPase NACHT PF05729.12 gi|89256930|ref|YP_514292.1| - 0.26 11.2 1.3 0.37 10.7 0.4 1.7 2 0 0 2 2 1 0 NACHT domain ResIII PF04851.15 gi|89256930|ref|YP_514292.1| - 0.4 10.7 3.9 0.48 10.4 1.1 2.4 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_29 PF13555.6 gi|89256930|ref|YP_514292.1| - 0.53 10.1 3.9 3.3 7.5 0.3 3.2 3 1 1 4 4 4 0 P-loop containing region of AAA domain LysM PF01476.20 gi|89256931|ref|YP_514293.1| - 1.4e-06 28.2 0.2 3.8e-06 26.9 0.2 1.8 1 1 0 1 1 1 1 LysM domain TRP PF06011.12 gi|89256931|ref|YP_514293.1| - 0.03 13.0 0.0 0.046 12.5 0.0 1.2 1 0 0 1 1 1 0 Transient receptor potential (TRP) ion channel TPR_17 PF13431.6 gi|89256931|ref|YP_514293.1| - 0.036 14.4 0.0 0.081 13.3 0.0 1.6 1 0 0 1 1 1 0 Tetratricopeptide repeat Phosphatase PF15698.5 gi|89256931|ref|YP_514293.1| - 0.16 11.1 0.1 0.3 10.2 0.1 1.3 1 0 0 1 1 1 0 Phosphatase GTP_EFTU PF00009.27 gi|89256932|ref|YP_514294.1| - 1.2e-47 162.0 0.0 1.7e-47 161.5 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain RF3_C PF16658.5 gi|89256932|ref|YP_514294.1| - 1.7e-44 150.8 0.0 3.3e-44 149.9 0.0 1.5 1 0 0 1 1 1 1 Class II release factor RF3, C-terminal domain GTP_EFTU_D2 PF03144.25 gi|89256932|ref|YP_514294.1| - 3.4e-12 46.6 0.0 7.2e-12 45.5 0.0 1.6 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|89256932|ref|YP_514294.1| - 2.2e-05 24.5 0.1 4.8e-05 23.4 0.1 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase EFG_II PF14492.6 gi|89256932|ref|YP_514294.1| - 0.0075 16.3 0.0 0.019 15.0 0.0 1.7 1 0 0 1 1 1 1 Elongation Factor G, domain II HTH_33 PF13592.6 gi|89256932|ref|YP_514294.1| - 0.072 12.7 0.0 4.8 6.9 0.0 2.6 2 0 0 2 2 2 0 Winged helix-turn helix Thymidylate_kin PF02223.17 gi|89256933|ref|YP_514295.1| - 2.1e-50 170.9 0.0 2.4e-50 170.8 0.0 1.0 1 0 0 1 1 1 1 Thymidylate kinase dNK PF01712.19 gi|89256933|ref|YP_514295.1| - 3.2e-05 23.9 0.0 0.00015 21.7 0.0 1.9 1 1 0 1 1 1 1 Deoxynucleoside kinase AAA_17 PF13207.6 gi|89256933|ref|YP_514295.1| - 0.0058 17.0 0.1 19 5.7 0.0 3.1 2 1 1 3 3 3 0 AAA domain AAA_18 PF13238.6 gi|89256933|ref|YP_514295.1| - 0.008 16.7 0.1 0.036 14.6 0.0 2.1 1 1 1 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|89256933|ref|YP_514295.1| - 0.02 15.2 0.0 0.042 14.1 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|89256933|ref|YP_514295.1| - 0.027 14.7 0.0 0.035 14.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|89256933|ref|YP_514295.1| - 0.054 13.2 0.0 0.077 12.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain NAD_binding_3 PF03447.16 gi|89256933|ref|YP_514295.1| - 0.079 13.6 0.0 1.2 9.8 0.0 2.1 2 0 0 2 2 2 0 Homoserine dehydrogenase, NAD binding domain Zeta_toxin PF06414.12 gi|89256933|ref|YP_514295.1| - 0.087 12.1 0.0 0.32 10.2 0.0 1.9 1 1 0 1 1 1 0 Zeta toxin AAA_33 PF13671.6 gi|89256933|ref|YP_514295.1| - 0.1 12.7 0.0 0.21 11.7 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|89256933|ref|YP_514295.1| - 0.13 12.3 0.4 0.81 9.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain PYNP_C PF07831.13 gi|89256933|ref|YP_514295.1| - 0.15 11.8 0.1 2 8.1 0.0 2.7 2 1 1 3 3 3 0 Pyrimidine nucleoside phosphorylase C-terminal domain AAA_16 PF13191.6 gi|89256933|ref|YP_514295.1| - 0.15 12.4 0.0 0.22 11.9 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain Nucleos_tra2_C PF07662.13 gi|89256934|ref|YP_514296.1| - 1.5e-59 201.3 8.5 1.5e-59 201.3 8.5 1.9 2 0 0 2 2 2 1 Na+ dependent nucleoside transporter C-terminus Nucleos_tra2_N PF01773.20 gi|89256934|ref|YP_514296.1| - 6e-17 62.0 10.8 2.9e-16 59.8 5.5 3.6 3 0 0 3 3 3 1 Na+ dependent nucleoside transporter N-terminus Gate PF07670.14 gi|89256934|ref|YP_514296.1| - 0.25 11.6 20.8 0.36 11.1 14.9 3.2 2 1 1 3 3 3 0 Nucleoside recognition DUF3290 PF11694.8 gi|89256934|ref|YP_514296.1| - 5.4 7.0 14.3 0.062 13.3 5.2 2.4 3 0 0 3 3 3 0 Protein of unknown function (DUF3290) Nucleos_tra2_C PF07662.13 gi|89256935|ref|YP_514297.1| - 1.7e-57 194.6 10.3 1.7e-57 194.6 10.3 2.2 2 1 0 2 2 2 1 Na+ dependent nucleoside transporter C-terminus Nucleos_tra2_N PF01773.20 gi|89256935|ref|YP_514297.1| - 4.1e-22 78.6 3.2 7.2e-20 71.4 2.8 3.4 2 0 0 2 2 2 1 Na+ dependent nucleoside transporter N-terminus Gate PF07670.14 gi|89256935|ref|YP_514297.1| - 0.017 15.4 9.3 0.017 15.4 9.3 4.0 2 1 1 3 3 3 0 Nucleoside recognition DUF3290 PF11694.8 gi|89256935|ref|YP_514297.1| - 0.45 10.5 12.4 0.09 12.7 7.5 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3290) DeoC PF01791.9 gi|89256936|ref|YP_514298.1| - 3.9e-25 88.8 0.7 4.6e-25 88.6 0.7 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase AtuA PF07287.11 gi|89256936|ref|YP_514298.1| - 0.015 14.1 0.1 0.024 13.4 0.1 1.5 1 1 0 1 1 1 0 Acyclic terpene utilisation family protein AtuA Prolamin_like PF05617.11 gi|89256936|ref|YP_514298.1| - 0.051 13.8 0.3 0.11 12.7 0.3 1.5 1 0 0 1 1 1 0 Prolamin-like EcoRII-C PF09019.11 gi|89256936|ref|YP_514298.1| - 0.077 13.1 0.0 0.13 12.3 0.0 1.3 1 0 0 1 1 1 0 EcoRII C terminal Beta_protein PF14350.6 gi|89256936|ref|YP_514298.1| - 0.084 12.3 0.1 0.16 11.3 0.1 1.7 1 1 0 1 1 1 0 Beta protein DUF3237 PF11578.8 gi|89256936|ref|YP_514298.1| - 0.11 12.3 0.0 0.17 11.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3237) Metalloenzyme PF01676.18 gi|89256937|ref|YP_514299.1| - 5.6e-25 88.1 0.0 1.4e-24 86.8 0.0 1.7 1 1 0 1 1 1 1 Metalloenzyme superfamily Sulfatase PF00884.23 gi|89256937|ref|YP_514299.1| - 0.00027 20.4 0.0 0.00082 18.9 0.0 1.9 2 0 0 2 2 2 1 Sulfatase Phosphodiest PF01663.22 gi|89256937|ref|YP_514299.1| - 0.00041 20.0 0.0 0.00061 19.5 0.0 1.2 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Pan_kinase PF03309.14 gi|89256938|ref|YP_514300.1| - 2.9e-54 184.1 0.0 3.4e-54 183.8 0.0 1.0 1 0 0 1 1 1 1 Type III pantothenate kinase DNA_pol_A PF00476.20 gi|89256939|ref|YP_514301.1| - 4.4e-155 516.4 6.0 8.4e-155 515.4 6.0 1.5 1 0 0 1 1 1 1 DNA polymerase family A 5_3_exonuc_N PF02739.16 gi|89256939|ref|YP_514301.1| - 8.4e-51 172.0 2.5 1.1e-50 171.7 0.8 2.1 2 0 0 2 2 2 1 5'-3' exonuclease, N-terminal resolvase-like domain DNA_pol_A_exo1 PF01612.20 gi|89256939|ref|YP_514301.1| - 1.9e-35 122.2 1.0 1.9e-35 122.2 1.0 2.9 3 0 0 3 3 3 1 3'-5' exonuclease 5_3_exonuc PF01367.20 gi|89256939|ref|YP_514301.1| - 5.6e-32 110.2 0.2 5.6e-32 110.2 0.2 4.0 4 2 0 4 4 4 1 5'-3' exonuclease, C-terminal SAM fold HHH_2 PF12826.7 gi|89256939|ref|YP_514301.1| - 0.048 13.8 0.0 0.32 11.1 0.0 2.3 2 0 0 2 2 2 0 Helix-hairpin-helix motif NYN_YacP PF05991.11 gi|89256939|ref|YP_514301.1| - 0.074 13.0 0.3 0.074 13.0 0.3 2.7 3 0 0 3 3 3 0 YacP-like NYN domain LpxK PF02606.14 gi|89256940|ref|YP_514302.1| - 2.6e-96 322.6 0.1 2.9e-96 322.4 0.1 1.0 1 0 0 1 1 1 1 Tetraacyldisaccharide-1-P 4'-kinase DUF234 PF03008.14 gi|89256940|ref|YP_514302.1| - 0.049 14.1 1.3 0.09 13.2 0.3 2.0 2 0 0 2 2 2 0 Archaea bacterial proteins of unknown function ABC_membrane PF00664.23 gi|89256941|ref|YP_514303.1| - 2.5e-44 152.0 15.8 3.9e-44 151.4 15.8 1.3 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 gi|89256941|ref|YP_514303.1| - 6.1e-35 120.7 0.2 1.4e-34 119.5 0.2 1.7 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|89256941|ref|YP_514303.1| - 5.8e-10 39.0 4.4 4.7e-09 36.0 4.4 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain DEAD PF00270.29 gi|89256941|ref|YP_514303.1| - 0.0012 18.6 0.1 0.0038 17.0 0.1 1.8 1 0 0 1 1 1 1 DEAD/DEAH box helicase AAA_30 PF13604.6 gi|89256941|ref|YP_514303.1| - 0.0036 17.0 0.0 0.0095 15.7 0.0 1.6 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|89256941|ref|YP_514303.1| - 0.0067 16.4 0.1 0.016 15.1 0.1 1.7 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 gi|89256941|ref|YP_514303.1| - 0.011 16.0 0.3 0.074 13.3 0.3 2.1 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|89256941|ref|YP_514303.1| - 0.011 15.4 0.3 0.028 14.2 0.3 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain SRP54 PF00448.22 gi|89256941|ref|YP_514303.1| - 0.015 14.9 0.1 0.047 13.3 0.0 1.9 1 1 1 2 2 2 0 SRP54-type protein, GTPase domain AAA_16 PF13191.6 gi|89256941|ref|YP_514303.1| - 0.015 15.7 0.1 0.033 14.6 0.1 1.5 1 0 0 1 1 1 0 AAA ATPase domain AAA_25 PF13481.6 gi|89256941|ref|YP_514303.1| - 0.028 14.0 0.4 0.33 10.5 0.0 2.5 3 0 0 3 3 3 0 AAA domain AAA_15 PF13175.6 gi|89256941|ref|YP_514303.1| - 0.029 14.1 0.1 0.029 14.1 0.1 2.1 2 0 0 2 2 2 0 AAA ATPase domain ABC_ATPase PF09818.9 gi|89256941|ref|YP_514303.1| - 0.033 13.0 2.1 0.049 12.4 0.2 1.9 2 0 0 2 2 2 0 Predicted ATPase of the ABC class T2SSE PF00437.20 gi|89256941|ref|YP_514303.1| - 0.035 13.2 0.1 0.07 12.2 0.1 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein APS_kinase PF01583.20 gi|89256941|ref|YP_514303.1| - 0.08 12.8 0.1 0.16 11.8 0.1 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_18 PF13238.6 gi|89256941|ref|YP_514303.1| - 0.092 13.3 0.5 0.38 11.3 0.5 2.2 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|89256941|ref|YP_514303.1| - 0.098 13.1 1.6 1.2 9.6 0.5 2.7 2 1 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 gi|89256941|ref|YP_514303.1| - 0.1 12.6 0.2 0.33 11.0 0.2 2.0 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain NACHT PF05729.12 gi|89256941|ref|YP_514303.1| - 0.12 12.3 0.1 1.2 9.0 0.1 2.2 2 0 0 2 2 2 0 NACHT domain DUF87 PF01935.17 gi|89256941|ref|YP_514303.1| - 0.64 10.1 5.3 2.9 7.9 0.2 3.4 3 1 0 4 4 4 0 Helicase HerA, central domain AAA_33 PF13671.6 gi|89256941|ref|YP_514303.1| - 1.3 9.2 2.9 1 9.6 0.7 2.1 2 1 0 2 2 2 0 AAA domain PolyA_pol PF01743.20 gi|89256942|ref|YP_514304.1| - 2.1e-22 79.9 0.2 7e-22 78.2 0.2 1.9 1 1 0 1 1 1 1 Poly A polymerase head domain PolyA_pol_RNAbd PF12627.7 gi|89256942|ref|YP_514304.1| - 3.1e-08 33.3 1.4 7e-08 32.1 1.4 1.7 1 0 0 1 1 1 1 Probable RNA and SrmB- binding site of polymerase A DUF4258 PF14076.6 gi|89256942|ref|YP_514304.1| - 0.096 13.1 0.1 1.2 9.6 0.0 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF4258) DsbB PF02600.16 gi|89256943|ref|YP_514305.1| - 5.5e-21 75.6 9.2 6.3e-21 75.4 9.2 1.0 1 0 0 1 1 1 1 Disulfide bond formation protein DsbB HlyD_D23 PF16576.5 gi|89256944|ref|YP_514306.1| - 4.5e-27 94.7 0.1 7.3e-27 94.0 0.1 1.3 1 0 0 1 1 1 1 Barrel-sandwich domain of CusB or HlyD membrane-fusion HlyD_3 PF13437.6 gi|89256944|ref|YP_514306.1| - 2.7e-16 60.2 0.1 2.4e-13 50.7 0.0 2.7 1 1 1 2 2 2 2 HlyD family secretion protein Biotin_lipoyl_2 PF13533.6 gi|89256944|ref|YP_514306.1| - 7.2e-12 44.9 2.6 2e-10 40.3 0.1 4.0 4 0 0 4 4 4 1 Biotin-lipoyl like Biotin_lipoyl PF00364.22 gi|89256944|ref|YP_514306.1| - 0.00017 21.3 0.1 0.0012 18.7 0.0 2.4 3 0 0 3 3 3 1 Biotin-requiring enzyme PTS_EIIA_1 PF00358.20 gi|89256944|ref|YP_514306.1| - 0.0048 16.7 0.1 0.033 13.9 0.1 2.5 2 0 0 2 2 2 1 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DUF2244 PF10003.9 gi|89256944|ref|YP_514306.1| - 0.17 11.5 0.9 0.43 10.3 0.9 1.6 1 0 0 1 1 1 0 Integral membrane protein (DUF2244) ETRAMP PF09716.10 gi|89256944|ref|YP_514306.1| - 0.21 11.7 7.8 3.2 7.9 0.6 2.9 2 0 0 2 2 2 0 Malarial early transcribed membrane protein (ETRAMP) DHHC PF01529.20 gi|89256944|ref|YP_514306.1| - 0.57 10.3 2.7 1.2 9.3 2.7 1.4 1 0 0 1 1 1 0 DHHC palmitoyltransferase OEP PF02321.18 gi|89256944|ref|YP_514306.1| - 2.1 8.1 9.0 0.9 9.3 6.0 1.9 2 0 0 2 2 2 0 Outer membrane efflux protein ACR_tran PF00873.19 gi|89256945|ref|YP_514307.1| - 6.7e-248 825.2 34.6 7.7e-248 825.0 34.6 1.0 1 0 0 1 1 1 1 AcrB/AcrD/AcrF family MMPL PF03176.15 gi|89256945|ref|YP_514307.1| - 1.2e-07 31.0 25.5 2.3e-07 30.1 9.0 2.6 2 1 0 2 2 2 2 MMPL family SUR7 PF06687.12 gi|89256945|ref|YP_514307.1| - 0.084 12.5 12.4 0.026 14.1 2.2 3.0 2 1 0 2 2 2 0 SUR7/PalI family MFS_1 PF07690.16 gi|89256946|ref|YP_514308.1| - 1.8e-31 109.3 44.5 1.4e-25 90.0 16.0 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_4 PF06779.14 gi|89256946|ref|YP_514308.1| - 0.1 11.9 24.6 0.0094 15.3 7.6 2.2 1 1 1 2 2 2 0 Uncharacterised MFS-type transporter YbfB OATP PF03137.20 gi|89256946|ref|YP_514308.1| - 0.27 9.4 18.4 0.04 12.2 3.9 2.5 2 0 0 2 2 2 0 Organic Anion Transporter Polypeptide (OATP) family DUF2157 PF09925.9 gi|89256946|ref|YP_514308.1| - 1 9.1 23.2 0.51 10.1 10.7 3.1 2 2 0 2 2 2 0 Predicted membrane protein (DUF2157) DDE_5 PF13546.6 gi|89256947|ref|YP_514309.1| - 5.4e-09 35.8 0.0 6.4e-09 35.5 0.0 1.0 1 0 0 1 1 1 1 DDE superfamily endonuclease Phage_int_SAM_5 PF13102.6 gi|89256947|ref|YP_514309.1| - 0.03 14.6 4.5 0.086 13.2 1.9 2.4 2 0 0 2 2 2 0 Phage integrase SAM-like domain PelG PF16933.5 gi|89256947|ref|YP_514309.1| - 0.064 12.1 0.5 0.08 11.8 0.5 1.1 1 0 0 1 1 1 0 Putative exopolysaccharide Exporter (EPS-E) Peptidase_S66 PF02016.15 gi|89256948|ref|YP_514310.1| - 1.2e-24 86.7 0.0 2.1e-24 85.9 0.0 1.4 1 0 0 1 1 1 1 LD-carboxypeptidase N-terminal domain Peptidase_S66C PF17676.1 gi|89256948|ref|YP_514310.1| - 2.7e-19 69.9 0.0 4.8e-19 69.1 0.0 1.4 1 0 0 1 1 1 1 LD-carboxypeptidase C-terminal domain DUF4972 PF16342.5 gi|89256948|ref|YP_514310.1| - 0.00074 19.2 0.3 0.0013 18.4 0.3 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4972) DDE_Tnp_IS1595 PF12762.7 gi|89256949|ref|YP_514311.1| - 3.6e-17 62.8 0.1 4.2e-17 62.6 0.1 1.1 1 0 0 1 1 1 1 ISXO2-like transposase domain HMG_CoA_synt_N PF01154.17 gi|89256949|ref|YP_514311.1| - 0.032 14.1 0.0 0.045 13.6 0.0 1.2 1 0 0 1 1 1 0 Hydroxymethylglutaryl-coenzyme A synthase N terminal Neisseria_TspB PF05616.13 gi|89256949|ref|YP_514311.1| - 0.11 10.9 1.0 0.14 10.6 1.0 1.1 1 0 0 1 1 1 0 Neisseria meningitidis TspB protein DDE_Tnp_1_2 PF13586.6 gi|89256950|ref|YP_514312.1| - 1.1e-13 51.3 0.0 2e-13 50.5 0.0 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|89256950|ref|YP_514312.1| - 4.9e-12 46.0 2.0 4.4e-11 42.8 2.0 2.0 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 gi|89256950|ref|YP_514312.1| - 7.6e-08 32.5 0.0 1.1e-07 32.0 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF4096 PF13340.6 gi|89256950|ref|YP_514312.1| - 0.006 16.8 0.0 0.012 15.8 0.0 1.5 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) DDE_3 PF13358.6 gi|89256951|ref|YP_514313.1| - 2.3e-30 105.3 0.1 7.9e-30 103.5 0.0 1.8 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.16 gi|89256951|ref|YP_514313.1| - 0.0029 17.6 1.5 0.0084 16.2 0.6 2.3 2 1 0 2 2 2 1 Transposase HTH_29 PF13551.6 gi|89256951|ref|YP_514313.1| - 0.0033 17.4 0.0 0.008 16.2 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn helix HTH_40 PF14493.6 gi|89256951|ref|YP_514313.1| - 0.0099 16.3 0.1 0.069 13.6 0.0 2.3 3 1 0 3 3 3 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|89256951|ref|YP_514313.1| - 0.026 14.6 0.0 0.073 13.2 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|89256951|ref|YP_514313.1| - 0.12 12.2 0.0 0.34 10.8 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain rve PF00665.26 gi|89256951|ref|YP_514313.1| - 0.15 12.3 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 Integrase core domain DDE_Tnp_ISAZ013 PF07592.11 gi|89256951|ref|YP_514313.1| - 0.17 10.9 0.3 1.1 8.1 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain tRNA-synt_1e PF01406.19 gi|89256953|ref|YP_514315.1| - 4.2e-136 453.2 0.7 4.2e-136 453.2 0.7 1.5 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain DALR_2 PF09190.11 gi|89256953|ref|YP_514315.1| - 3.8e-22 78.5 0.1 3.8e-22 78.5 0.1 2.5 4 0 0 4 4 4 1 DALR domain tRNA-synt_1g PF09334.11 gi|89256953|ref|YP_514315.1| - 6.4e-17 61.4 5.2 7.8e-09 34.8 0.2 2.6 3 0 0 3 3 3 2 tRNA synthetases class I (M) tRNA-synt_1f PF01921.18 gi|89256953|ref|YP_514315.1| - 2e-06 27.0 0.6 0.0023 16.9 0.0 2.6 2 1 0 3 3 3 2 tRNA synthetases class I (K) tRNA-synt_1 PF00133.22 gi|89256953|ref|YP_514315.1| - 2.2e-06 26.3 0.0 0.00015 20.2 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) HOCHOB PF17943.1 gi|89256953|ref|YP_514315.1| - 0.019 15.7 0.2 0.74 10.5 0.0 2.8 2 1 0 2 2 2 0 Homeobox-cysteine loop-homeobox tRNA-synt_1d PF00750.19 gi|89256953|ref|YP_514315.1| - 0.046 12.7 0.6 0.15 11.0 0.0 2.1 3 0 0 3 3 3 0 tRNA synthetases class I (R) Cast PF10174.9 gi|89256953|ref|YP_514315.1| - 0.051 11.8 0.3 0.076 11.2 0.3 1.3 1 0 0 1 1 1 0 RIM-binding protein of the cytomatrix active zone T3SS_needle_F PF09392.10 gi|89256953|ref|YP_514315.1| - 0.13 12.4 0.3 2.5 8.4 0.1 2.8 2 0 0 2 2 2 0 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF UVR PF02151.19 gi|89256953|ref|YP_514315.1| - 0.98 9.3 5.2 2.4 8.0 5.2 1.7 1 0 0 1 1 1 0 UvrB/uvrC motif MTS PF05175.14 gi|89256954|ref|YP_514316.1| - 1.1e-19 70.6 0.2 8.7e-18 64.4 0.1 2.2 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_31 PF13847.6 gi|89256954|ref|YP_514316.1| - 3.8e-15 56.0 0.1 6.7e-15 55.2 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|89256954|ref|YP_514316.1| - 4.1e-10 40.2 0.0 1.6e-09 38.3 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|89256954|ref|YP_514316.1| - 1.7e-08 34.3 0.0 3.9e-08 33.1 0.0 1.5 2 0 0 2 2 2 1 Conserved hypothetical protein 95 PrmA PF06325.13 gi|89256954|ref|YP_514316.1| - 5.1e-08 32.7 0.8 7.8e-08 32.1 0.8 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_15 PF09445.10 gi|89256954|ref|YP_514316.1| - 4.9e-07 29.5 0.0 7.4e-07 28.9 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_12 PF08242.12 gi|89256954|ref|YP_514316.1| - 2.8e-06 28.0 0.2 7.4e-06 26.6 0.2 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|89256954|ref|YP_514316.1| - 6.7e-06 26.1 0.3 1.7e-05 24.8 0.3 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_16 PF10294.9 gi|89256954|ref|YP_514316.1| - 1.5e-05 24.8 0.0 3.5e-05 23.6 0.0 1.5 1 0 0 1 1 1 1 Lysine methyltransferase Methyltransf_11 PF08241.12 gi|89256954|ref|YP_514316.1| - 0.00012 22.6 0.0 0.00027 21.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.18 gi|89256954|ref|YP_514316.1| - 0.00013 21.8 0.0 0.00022 21.0 0.0 1.4 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Met_10 PF02475.16 gi|89256954|ref|YP_514316.1| - 0.00036 20.3 0.0 0.00066 19.5 0.0 1.4 1 0 0 1 1 1 1 Met-10+ like-protein N6_Mtase PF02384.16 gi|89256954|ref|YP_514316.1| - 0.00071 18.9 0.0 0.0013 18.1 0.0 1.4 1 0 0 1 1 1 1 N-6 DNA Methylase Methyltransf_10 PF05971.12 gi|89256954|ref|YP_514316.1| - 0.0011 18.3 0.1 0.0018 17.7 0.1 1.2 1 0 0 1 1 1 1 RNA methyltransferase Ubie_methyltran PF01209.18 gi|89256954|ref|YP_514316.1| - 0.0027 17.1 0.0 0.0053 16.1 0.0 1.5 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|89256954|ref|YP_514316.1| - 0.031 14.1 0.0 0.06 13.2 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain TrmK PF04816.12 gi|89256954|ref|YP_514316.1| - 0.033 13.7 0.1 0.081 12.4 0.1 1.6 1 0 0 1 1 1 0 tRNA (adenine(22)-N(1))-methyltransferase CMAS PF02353.20 gi|89256954|ref|YP_514316.1| - 0.044 13.1 0.0 0.063 12.6 0.0 1.3 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_2 PF00891.18 gi|89256954|ref|YP_514316.1| - 0.049 12.9 0.0 0.094 12.0 0.0 1.4 1 0 0 1 1 1 0 O-methyltransferase domain Eco57I PF07669.11 gi|89256954|ref|YP_514316.1| - 0.056 14.0 0.0 0.13 12.8 0.0 1.7 1 0 0 1 1 1 0 Eco57I restriction-modification methylase PRMT5 PF05185.16 gi|89256954|ref|YP_514316.1| - 0.068 13.0 0.0 0.14 12.0 0.0 1.5 2 0 0 2 2 1 0 PRMT5 arginine-N-methyltransferase GidB PF02527.15 gi|89256954|ref|YP_514316.1| - 0.088 12.1 0.0 0.15 11.3 0.0 1.3 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G Methyltransf_20 PF12147.8 gi|89256954|ref|YP_514316.1| - 0.12 11.5 0.0 0.18 10.9 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase PCMT PF01135.19 gi|89256954|ref|YP_514316.1| - 0.15 11.8 0.0 0.27 11.0 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MFS_1 PF07690.16 gi|89256955|ref|YP_514317.1| - 1.2e-35 123.2 33.4 1.2e-35 123.2 33.4 1.7 1 1 0 1 1 1 1 Major Facilitator Superfamily MFS_2 PF13347.6 gi|89256955|ref|YP_514317.1| - 2.2e-14 52.9 33.9 1.8e-07 30.1 19.4 2.7 1 1 2 3 3 3 2 MFS/sugar transport protein Sugar_tr PF00083.24 gi|89256955|ref|YP_514317.1| - 1.2e-11 44.1 10.3 1.2e-11 44.1 10.3 3.9 2 2 0 2 2 2 1 Sugar (and other) transporter TRI12 PF06609.13 gi|89256955|ref|YP_514317.1| - 2.1e-05 23.2 4.7 2.1e-05 23.2 4.7 1.7 1 1 0 2 2 2 1 Fungal trichothecene efflux pump (TRI12) MFS_3 PF05977.13 gi|89256955|ref|YP_514317.1| - 0.039 12.4 13.1 0.083 11.3 8.9 2.7 1 1 1 2 2 2 0 Transmembrane secretion effector OATP PF03137.20 gi|89256955|ref|YP_514317.1| - 0.87 7.8 29.4 0.043 12.1 10.7 3.2 1 1 2 3 3 3 0 Organic Anion Transporter Polypeptide (OATP) family Acetyltransf_1 PF00583.25 gi|89256956|ref|YP_514318.1| - 2.4e-14 53.6 0.0 2.9e-14 53.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|89256956|ref|YP_514318.1| - 3.4e-13 49.7 0.0 3.7e-13 49.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|89256956|ref|YP_514318.1| - 6.5e-09 36.1 0.4 8.5e-09 35.7 0.4 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|89256956|ref|YP_514318.1| - 5.1e-08 33.2 0.0 7.5e-08 32.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|89256956|ref|YP_514318.1| - 2.4e-07 31.5 0.0 2.7e-07 31.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|89256956|ref|YP_514318.1| - 9.7e-06 25.5 0.0 1.6e-05 24.8 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_CG PF14542.6 gi|89256956|ref|YP_514318.1| - 0.0034 17.5 0.0 0.0052 16.9 0.0 1.3 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase DDE_3 PF13358.6 gi|89256957|ref|YP_514319.1| - 2.3e-30 105.3 0.1 7.9e-30 103.5 0.0 1.8 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.16 gi|89256957|ref|YP_514319.1| - 0.0029 17.6 1.5 0.0084 16.2 0.6 2.3 2 1 0 2 2 2 1 Transposase HTH_29 PF13551.6 gi|89256957|ref|YP_514319.1| - 0.0033 17.4 0.0 0.008 16.2 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn helix HTH_40 PF14493.6 gi|89256957|ref|YP_514319.1| - 0.0099 16.3 0.1 0.069 13.6 0.0 2.3 3 1 0 3 3 3 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|89256957|ref|YP_514319.1| - 0.026 14.6 0.0 0.073 13.2 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|89256957|ref|YP_514319.1| - 0.12 12.2 0.0 0.34 10.8 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain rve PF00665.26 gi|89256957|ref|YP_514319.1| - 0.15 12.3 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 Integrase core domain DDE_Tnp_ISAZ013 PF07592.11 gi|89256957|ref|YP_514319.1| - 0.17 10.9 0.3 1.1 8.1 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain SBE2 PF17076.5 gi|89256958|ref|YP_514320.1| - 0.067 11.4 0.8 0.095 10.9 0.8 1.1 1 0 0 1 1 1 0 SBE2, cell-wall formation PilW PF16074.5 gi|89256959|ref|YP_514321.1| - 0.012 15.7 0.2 0.02 14.9 0.2 1.4 1 0 0 1 1 1 0 Type IV Pilus-assembly protein W N_methyl PF07963.12 gi|89256959|ref|YP_514321.1| - 0.016 14.8 3.1 0.027 14.1 3.1 1.4 1 0 0 1 1 1 0 Prokaryotic N-terminal methylation motif N_methyl PF07963.12 gi|89256961|ref|YP_514323.1| - 2.7e-05 23.5 0.7 2.7e-05 23.5 0.7 1.7 2 0 0 2 2 2 1 Prokaryotic N-terminal methylation motif N_methyl PF07963.12 gi|89256964|ref|YP_514326.1| - 3.4e-08 32.7 2.0 6.3e-08 31.9 2.0 1.4 1 0 0 1 1 1 1 Prokaryotic N-terminal methylation motif N_methyl PF07963.12 gi|89256965|ref|YP_514327.1| - 0.0058 16.1 0.4 0.009 15.5 0.4 1.3 1 0 0 1 1 1 1 Prokaryotic N-terminal methylation motif SpoOE-like PF09388.10 gi|89256965|ref|YP_514327.1| - 0.0064 16.4 0.1 0.016 15.1 0.0 1.7 2 0 0 2 2 2 1 Spo0E like sporulation regulatory protein FlgT_M PF16539.5 gi|89256965|ref|YP_514327.1| - 0.076 13.1 0.1 0.09 12.9 0.1 1.2 1 0 0 1 1 1 0 Flagellar assembly protein T, middle domain CBS PF00571.28 gi|89256966|ref|YP_514328.1| - 0.0036 17.7 0.1 0.016 15.6 0.0 2.1 2 1 0 2 2 2 1 CBS domain CorC_HlyC PF03471.17 gi|89256966|ref|YP_514328.1| - 0.019 15.0 0.0 0.028 14.4 0.0 1.3 1 0 0 1 1 1 0 Transporter associated domain DUF21 PF01595.20 gi|89256967|ref|YP_514329.1| - 6.2e-20 71.6 2.2 7.8e-20 71.3 2.2 1.0 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain Bac_rhodopsin PF01036.18 gi|89256967|ref|YP_514329.1| - 0.0007 19.2 1.9 0.00083 19.0 1.9 1.1 1 0 0 1 1 1 1 Bacteriorhodopsin-like protein Glyco_tranf_2_3 PF13641.6 gi|89256968|ref|YP_514330.1| - 5.8e-15 55.8 0.0 7.6e-15 55.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.26 gi|89256968|ref|YP_514330.1| - 7.6e-13 48.6 0.1 1.2e-12 48.0 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.6 gi|89256968|ref|YP_514330.1| - 8.7e-13 48.6 1.4 8.7e-13 48.6 1.4 3.0 3 1 0 3 3 3 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 gi|89256968|ref|YP_514330.1| - 6.8e-06 25.7 0.0 1.1e-05 25.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 SSF PF00474.17 gi|89256969|ref|YP_514331.1| - 4.4e-90 302.5 32.7 6.2e-90 302.0 32.7 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family 4HB_MCP_1 PF12729.7 gi|89256969|ref|YP_514331.1| - 0.096 12.2 1.6 0.39 10.2 1.6 2.0 1 0 0 1 1 1 0 Four helix bundle sensory module for signal transduction DUF5453 PF17534.2 gi|89256969|ref|YP_514331.1| - 1.2 9.0 8.4 0.34 10.9 3.7 2.6 2 0 0 2 2 2 0 Family of unknown function (DUF5453) ETRAMP PF09716.10 gi|89256969|ref|YP_514331.1| - 1.5 8.9 10.7 1.3 9.1 0.2 4.4 4 0 0 4 4 4 0 Malarial early transcribed membrane protein (ETRAMP) FBPase_glpX PF03320.13 gi|89256970|ref|YP_514332.1| - 2.7e-132 440.3 11.9 3.1e-132 440.1 11.9 1.0 1 0 0 1 1 1 1 Bacterial fructose-1,6-bisphosphatase, glpX-encoded ADH_zinc_N PF00107.26 gi|89256970|ref|YP_514332.1| - 0.048 13.6 0.4 0.38 10.7 0.1 2.5 2 1 0 2 2 2 0 Zinc-binding dehydrogenase CoA_binding_2 PF13380.6 gi|89256970|ref|YP_514332.1| - 0.11 13.0 0.2 0.51 10.8 0.0 2.0 2 0 0 2 2 2 0 CoA binding domain Hydrolase_4 PF12146.8 gi|89256971|ref|YP_514333.1| - 1.1e-11 44.5 0.0 1.4e-09 37.6 0.0 2.1 1 1 1 2 2 2 2 Serine aminopeptidase, S33 Peptidase_S15 PF02129.18 gi|89256971|ref|YP_514333.1| - 1.8e-05 24.5 0.1 0.00028 20.6 0.0 2.0 1 1 1 2 2 2 1 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_1 PF00561.20 gi|89256971|ref|YP_514333.1| - 8.3e-05 22.3 0.5 0.0097 15.6 0.1 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_2 PF02230.16 gi|89256971|ref|YP_514333.1| - 0.00072 19.4 0.0 0.00088 19.1 0.0 1.2 1 0 0 1 1 1 1 Phospholipase/Carboxylesterase Abhydrolase_6 PF12697.7 gi|89256971|ref|YP_514333.1| - 0.0012 19.6 0.0 0.0015 19.2 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family DLH PF01738.18 gi|89256971|ref|YP_514333.1| - 0.0027 17.3 0.0 0.0047 16.5 0.0 1.4 1 0 0 1 1 1 1 Dienelactone hydrolase family Peptidase_S9 PF00326.21 gi|89256971|ref|YP_514333.1| - 0.0031 17.0 0.2 1.4 8.3 0.1 2.2 1 1 1 2 2 2 2 Prolyl oligopeptidase family Abhydrolase_5 PF12695.7 gi|89256971|ref|YP_514333.1| - 0.017 14.9 0.0 0.033 13.9 0.0 1.5 1 1 1 2 2 2 0 Alpha/beta hydrolase family BAAT_C PF08840.11 gi|89256971|ref|YP_514333.1| - 0.034 14.1 0.0 0.064 13.2 0.0 1.4 1 1 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal Abhydrolase_3 PF07859.13 gi|89256971|ref|YP_514333.1| - 0.043 13.7 0.0 0.09 12.6 0.0 1.4 1 1 0 1 1 1 0 alpha/beta hydrolase fold PAF-AH_p_II PF03403.13 gi|89256971|ref|YP_514333.1| - 0.15 10.5 0.2 1 7.8 0.0 1.9 2 0 0 2 2 2 0 Platelet-activating factor acetylhydrolase, isoform II AA_permease PF00324.21 gi|89256972|ref|YP_514334.1| - 1.2e-119 400.0 60.4 1.4e-119 399.8 60.4 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.6 gi|89256972|ref|YP_514334.1| - 5.7e-43 147.3 65.5 7.6e-43 146.9 65.5 1.2 1 0 0 1 1 1 1 Amino acid permease PAP2 PF01569.21 gi|89256973|ref|YP_514335.1| - 5.2e-19 68.4 2.4 5.2e-19 68.4 2.4 2.4 1 1 1 2 2 2 1 PAP2 superfamily DUF3980 PF13140.6 gi|89256973|ref|YP_514335.1| - 0.03 14.8 0.5 0.03 14.8 0.5 2.5 3 0 0 3 3 3 0 Domain of unknown function (DUF3980) FtsK_SpoIIIE PF01580.18 gi|89256974|ref|YP_514336.1| - 3.5e-62 209.9 0.3 8.2e-62 208.7 0.3 1.7 1 1 0 1 1 1 1 FtsK/SpoIIIE family FtsK_4TM PF13491.6 gi|89256974|ref|YP_514336.1| - 3.2e-30 105.1 11.8 5e-30 104.5 11.8 1.2 1 0 0 1 1 1 1 4TM region of DNA translocase FtsK/SpoIIIE FtsK_alpha PF17854.1 gi|89256974|ref|YP_514336.1| - 4.6e-30 103.7 0.2 1.2e-29 102.4 0.2 1.8 1 0 0 1 1 1 1 FtsK alpha domain FtsK_gamma PF09397.10 gi|89256974|ref|YP_514336.1| - 2e-28 98.0 0.6 4.2e-28 96.9 0.6 1.6 1 0 0 1 1 1 1 Ftsk gamma domain AAA_10 PF12846.7 gi|89256974|ref|YP_514336.1| - 6.3e-05 22.1 1.7 0.029 13.3 0.0 3.4 4 0 0 4 4 4 2 AAA-like domain DUF87 PF01935.17 gi|89256974|ref|YP_514336.1| - 0.0047 17.1 2.1 0.0076 16.4 0.0 2.3 3 0 0 3 3 3 1 Helicase HerA, central domain T2SSE PF00437.20 gi|89256974|ref|YP_514336.1| - 0.02 14.0 0.0 0.043 12.9 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein LolA PF03548.15 gi|89256975|ref|YP_514337.1| - 1.6e-32 112.5 8.6 1.9e-32 112.3 8.6 1.1 1 0 0 1 1 1 1 Outer membrane lipoprotein carrier protein LolA DUF2092 PF09865.9 gi|89256975|ref|YP_514337.1| - 0.0033 16.8 2.7 0.21 10.9 0.0 2.8 3 0 0 3 3 3 2 Predicted periplasmic protein (DUF2092) DUF3460 PF11943.8 gi|89256976|ref|YP_514338.1| - 0.00033 20.9 0.1 0.00046 20.4 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3460) HEPN_AbiU2 PF18734.1 gi|89256976|ref|YP_514338.1| - 0.019 14.5 0.4 0.02 14.4 0.4 1.0 1 0 0 1 1 1 0 AbiU2 Vps16_C PF04840.12 gi|89256976|ref|YP_514338.1| - 0.035 13.1 0.1 0.038 13.0 0.1 1.0 1 0 0 1 1 1 0 Vps16, C-terminal region TrkH PF02386.16 gi|89256977|ref|YP_514339.1| - 1e-65 222.2 21.6 7.5e-64 216.0 21.6 2.1 1 1 0 1 1 1 1 Cation transport protein TssN PF17555.2 gi|89256977|ref|YP_514339.1| - 0.011 15.2 4.8 0.011 15.2 4.8 3.0 2 1 0 2 2 2 0 Type VI secretion system, TssN ProQ PF04352.13 gi|89256979|ref|YP_514341.1| - 7e-22 77.4 0.1 1.3e-21 76.5 0.1 1.5 1 0 0 1 1 1 1 ProQ/FINO family DUF3387 PF11867.8 gi|89256980|ref|YP_514342.1| - 1.9e-69 234.6 15.8 2.1e-69 234.4 15.8 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF3387) Glyco_hydro_44 PF12891.7 gi|89256980|ref|YP_514342.1| - 0.0035 17.3 0.0 0.0055 16.7 0.0 1.3 1 0 0 1 1 1 1 Glycoside hydrolase family 44 KdpD PF02702.17 gi|89256980|ref|YP_514342.1| - 0.031 13.8 0.8 0.048 13.1 0.8 1.3 1 0 0 1 1 1 0 Osmosensitive K+ channel His kinase sensor domain LPD3 PF18798.1 gi|89256980|ref|YP_514342.1| - 0.051 13.8 4.3 0.18 12.1 4.3 2.0 1 1 0 1 1 1 0 Large polyvalent protein-associated domain 3 TrmB PF01978.19 gi|89256980|ref|YP_514342.1| - 0.059 13.3 0.4 0.16 11.9 0.4 1.9 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB RNase_J_C PF17770.1 gi|89256980|ref|YP_514342.1| - 2.6 9.1 5.5 6.2 7.9 0.9 2.9 2 1 1 3 3 3 0 Ribonuclease J C-terminal domain SWI2_SNF2 PF18766.1 gi|89256981|ref|YP_514343.1| - 2.1e-29 102.8 0.1 3.7e-29 102.0 0.1 1.4 1 0 0 1 1 1 1 SWI2/SNF2 ATPase HSDR_N PF04313.14 gi|89256981|ref|YP_514343.1| - 1.1e-22 80.9 0.1 2.4e-22 79.8 0.1 1.5 1 0 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) ResIII PF04851.15 gi|89256981|ref|YP_514343.1| - 2.2e-07 31.0 0.0 4.8e-07 29.9 0.0 1.6 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit DDE_3 PF13358.6 gi|89256982|ref|YP_514344.1| - 2.3e-30 105.3 0.1 7.9e-30 103.5 0.0 1.8 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.16 gi|89256982|ref|YP_514344.1| - 0.0029 17.6 1.5 0.0084 16.2 0.6 2.3 2 1 0 2 2 2 1 Transposase HTH_29 PF13551.6 gi|89256982|ref|YP_514344.1| - 0.0033 17.4 0.0 0.008 16.2 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn helix HTH_40 PF14493.6 gi|89256982|ref|YP_514344.1| - 0.0099 16.3 0.1 0.069 13.6 0.0 2.3 3 1 0 3 3 3 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|89256982|ref|YP_514344.1| - 0.026 14.6 0.0 0.073 13.2 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|89256982|ref|YP_514344.1| - 0.12 12.2 0.0 0.34 10.8 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain rve PF00665.26 gi|89256982|ref|YP_514344.1| - 0.15 12.3 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 Integrase core domain DDE_Tnp_ISAZ013 PF07592.11 gi|89256982|ref|YP_514344.1| - 0.17 10.9 0.3 1.1 8.1 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain Cpn60_TCP1 PF00118.24 gi|89256983|ref|YP_514345.1| - 6.2e-100 335.1 18.8 9.8e-100 334.5 18.8 1.3 1 1 0 1 1 1 1 TCP-1/cpn60 chaperonin family Lar_N PF09861.9 gi|89256983|ref|YP_514345.1| - 0.02 14.1 0.1 0.072 12.2 0.0 1.9 2 0 0 2 2 2 0 Lactate racemase N-terminal domain Cpn10 PF00166.21 gi|89256984|ref|YP_514346.1| - 2.7e-35 120.3 0.5 3e-35 120.1 0.5 1.0 1 0 0 1 1 1 1 Chaperonin 10 Kd subunit Hexapep_2 PF14602.6 gi|89256984|ref|YP_514346.1| - 0.072 12.9 0.1 0.53 10.1 0.0 2.2 2 0 0 2 2 2 0 Hexapeptide repeat of succinyl-transferase BTP PF05232.12 gi|89256985|ref|YP_514347.1| - 4.8e-39 132.3 26.4 1.8e-20 72.8 9.0 2.0 2 0 0 2 2 2 2 Chlorhexidine efflux transporter EI24 PF07264.11 gi|89256985|ref|YP_514347.1| - 1.3 9.3 17.5 0.023 14.9 8.0 2.0 1 1 1 2 2 2 0 Etoposide-induced protein 2.4 (EI24) H2O2_YaaD PF03883.14 gi|89256986|ref|YP_514348.1| - 2.5e-80 269.3 3.2 2.9e-80 269.2 3.2 1.0 1 0 0 1 1 1 1 Peroxide stress protein YaaA DDE_3 PF13358.6 gi|89256987|ref|YP_514349.1| - 2.3e-30 105.3 0.1 7.9e-30 103.5 0.0 1.8 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.16 gi|89256987|ref|YP_514349.1| - 0.0029 17.6 1.5 0.0084 16.2 0.6 2.3 2 1 0 2 2 2 1 Transposase HTH_29 PF13551.6 gi|89256987|ref|YP_514349.1| - 0.0033 17.4 0.0 0.008 16.2 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn helix HTH_40 PF14493.6 gi|89256987|ref|YP_514349.1| - 0.0099 16.3 0.1 0.069 13.6 0.0 2.3 3 1 0 3 3 3 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|89256987|ref|YP_514349.1| - 0.026 14.6 0.0 0.073 13.2 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|89256987|ref|YP_514349.1| - 0.12 12.2 0.0 0.34 10.8 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain rve PF00665.26 gi|89256987|ref|YP_514349.1| - 0.15 12.3 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 Integrase core domain DDE_Tnp_ISAZ013 PF07592.11 gi|89256987|ref|YP_514349.1| - 0.17 10.9 0.3 1.1 8.1 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain SPOUT_MTase PF02590.17 gi|89256988|ref|YP_514350.1| - 1.2e-42 145.5 0.0 1.4e-42 145.3 0.0 1.0 1 0 0 1 1 1 1 Predicted SPOUT methyltransferase Methyltransf_31 PF13847.6 gi|89256989|ref|YP_514351.1| - 6.7e-21 74.7 2.7 9.7e-21 74.2 0.7 1.9 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.14 gi|89256989|ref|YP_514351.1| - 8.8e-20 70.9 0.4 6.2e-19 68.2 0.3 2.0 1 1 1 2 2 2 1 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|89256989|ref|YP_514351.1| - 9.2e-14 51.9 0.0 2.4e-13 50.6 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain PrmC_N PF17827.1 gi|89256989|ref|YP_514351.1| - 6.7e-13 49.0 0.0 1.4e-12 48.0 0.0 1.6 1 0 0 1 1 1 1 PrmC N-terminal domain PrmA PF06325.13 gi|89256989|ref|YP_514351.1| - 2.6e-12 46.7 2.8 4.3e-12 46.0 2.8 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_11 PF08241.12 gi|89256989|ref|YP_514351.1| - 1.8e-09 38.1 0.0 3.8e-09 37.1 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_16 PF10294.9 gi|89256989|ref|YP_514351.1| - 6.7e-08 32.5 0.1 1.3e-07 31.6 0.1 1.4 1 0 0 1 1 1 1 Lysine methyltransferase Methyltransf_12 PF08242.12 gi|89256989|ref|YP_514351.1| - 2.8e-07 31.2 1.1 8.7e-07 29.6 0.4 2.3 2 1 0 2 2 1 1 Methyltransferase domain UPF0020 PF01170.18 gi|89256989|ref|YP_514351.1| - 2.9e-07 30.3 0.2 6.2e-07 29.3 0.2 1.6 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Ubie_methyltran PF01209.18 gi|89256989|ref|YP_514351.1| - 6.7e-07 28.9 0.3 1.3e-06 28.0 0.3 1.4 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family tRNA_U5-meth_tr PF05958.11 gi|89256989|ref|YP_514351.1| - 1.2e-06 27.8 0.1 1.7e-06 27.2 0.1 1.3 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase Methyltransf_4 PF02390.17 gi|89256989|ref|YP_514351.1| - 4.1e-06 26.4 0.0 1.1e-05 25.0 0.0 1.7 2 0 0 2 2 2 1 Putative methyltransferase Methyltransf_32 PF13679.6 gi|89256989|ref|YP_514351.1| - 1.1e-05 25.5 0.0 2e-05 24.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|89256989|ref|YP_514351.1| - 1.2e-05 25.2 0.0 3.5e-05 23.7 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|89256989|ref|YP_514351.1| - 1.5e-05 25.0 0.5 3.4e-05 23.8 0.5 1.6 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|89256989|ref|YP_514351.1| - 1.8e-05 24.5 0.0 3.3e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 CMAS PF02353.20 gi|89256989|ref|YP_514351.1| - 5.3e-05 22.6 0.0 7.1e-05 22.2 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PCMT PF01135.19 gi|89256989|ref|YP_514351.1| - 0.0001 22.1 0.0 0.00016 21.5 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_10 PF05971.12 gi|89256989|ref|YP_514351.1| - 0.00016 21.1 0.1 0.00024 20.6 0.1 1.3 1 0 0 1 1 1 1 RNA methyltransferase Methyltransf_15 PF09445.10 gi|89256989|ref|YP_514351.1| - 0.00073 19.1 0.0 0.0016 18.0 0.0 1.6 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase GidB PF02527.15 gi|89256989|ref|YP_514351.1| - 0.0012 18.2 0.0 0.0033 16.8 0.0 1.6 2 0 0 2 2 2 1 rRNA small subunit methyltransferase G TehB PF03848.14 gi|89256989|ref|YP_514351.1| - 0.0015 18.0 0.2 0.0033 16.9 0.2 1.6 1 0 0 1 1 1 1 Tellurite resistance protein TehB DUF938 PF06080.12 gi|89256989|ref|YP_514351.1| - 0.0023 17.7 0.0 0.0036 17.1 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF938) TRM PF02005.16 gi|89256989|ref|YP_514351.1| - 0.0027 16.9 0.1 0.0034 16.6 0.1 1.2 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase RrnaAD PF00398.20 gi|89256989|ref|YP_514351.1| - 0.0034 16.5 0.5 0.011 14.8 0.0 1.9 2 0 0 2 2 2 1 Ribosomal RNA adenine dimethylase Eco57I PF07669.11 gi|89256989|ref|YP_514351.1| - 0.011 16.3 0.9 0.11 13.0 0.2 2.8 2 1 1 3 3 3 0 Eco57I restriction-modification methylase Methyltransf_2 PF00891.18 gi|89256989|ref|YP_514351.1| - 0.011 15.0 0.0 0.019 14.3 0.0 1.4 1 0 0 1 1 1 0 O-methyltransferase domain N6_Mtase PF02384.16 gi|89256989|ref|YP_514351.1| - 0.012 14.9 0.1 0.018 14.3 0.1 1.2 1 0 0 1 1 1 0 N-6 DNA Methylase DOT1 PF08123.13 gi|89256989|ref|YP_514351.1| - 0.013 15.0 0.2 0.029 13.9 0.0 1.6 2 0 0 2 2 2 0 Histone methylation protein DOT1 Methyltransf_8 PF05148.15 gi|89256989|ref|YP_514351.1| - 0.018 14.9 0.2 0.11 12.4 0.1 2.2 2 1 1 3 3 2 0 Hypothetical methyltransferase Methyltrans_SAM PF10672.9 gi|89256989|ref|YP_514351.1| - 0.033 13.4 0.0 0.064 12.4 0.0 1.4 1 0 0 1 1 1 0 S-adenosylmethionine-dependent methyltransferase ADH_zinc_N PF00107.26 gi|89256989|ref|YP_514351.1| - 0.061 13.3 0.0 0.14 12.1 0.0 1.6 2 0 0 2 2 1 0 Zinc-binding dehydrogenase Met_10 PF02475.16 gi|89256989|ref|YP_514351.1| - 0.09 12.5 0.1 0.23 11.2 0.1 1.6 1 1 1 2 2 2 0 Met-10+ like-protein ParA PF10609.9 gi|89256989|ref|YP_514351.1| - 0.093 12.2 0.3 0.17 11.3 0.3 1.4 1 0 0 1 1 1 0 NUBPL iron-transfer P-loop NTPase PCRF PF03462.18 gi|89256990|ref|YP_514352.1| - 9.7e-74 247.4 0.4 9.7e-74 247.4 0.4 1.7 2 0 0 2 2 2 1 PCRF domain RF-1 PF00472.20 gi|89256990|ref|YP_514352.1| - 6.3e-43 145.4 1.5 6.3e-43 145.4 1.5 2.3 2 0 0 2 2 2 1 RF-1 domain Med3 PF11593.8 gi|89256990|ref|YP_514352.1| - 0.057 12.6 0.1 0.057 12.6 0.1 1.7 2 0 0 2 2 2 0 Mediator complex subunit 3 fungal TSSC4 PF15264.6 gi|89256990|ref|YP_514352.1| - 0.17 12.1 0.8 0.5 10.6 0.8 1.7 1 0 0 1 1 1 0 Tumour suppressing sub-chromosomal transferable candidate 4 YkyA PF10368.9 gi|89256990|ref|YP_514352.1| - 2.1 8.0 14.1 0.14 11.8 8.5 1.9 2 0 0 2 2 2 0 Putative cell-wall binding lipoprotein AAA_23 PF13476.6 gi|89256990|ref|YP_514352.1| - 3 8.3 11.8 8.8 6.8 10.0 2.0 2 0 0 2 2 2 0 AAA domain GlutR_N PF05201.15 gi|89256991|ref|YP_514353.1| - 6.6e-44 149.2 0.0 2e-43 147.6 0.0 1.8 2 0 0 2 2 2 1 Glutamyl-tRNAGlu reductase, N-terminal domain Shikimate_DH PF01488.20 gi|89256991|ref|YP_514353.1| - 2.4e-29 102.1 2.4 4.7e-29 101.2 0.2 2.2 2 1 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase GlutR_dimer PF00745.20 gi|89256991|ref|YP_514353.1| - 7e-15 55.2 0.2 1.5e-14 54.2 0.2 1.6 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain F420_oxidored PF03807.17 gi|89256991|ref|YP_514353.1| - 2e-06 28.3 1.1 4.1e-06 27.3 0.1 2.0 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Sacchrp_dh_NADP PF03435.18 gi|89256991|ref|YP_514353.1| - 0.00022 21.5 0.8 0.0012 19.1 0.1 2.3 1 1 1 2 2 2 1 Saccharopine dehydrogenase NADP binding domain 2-Hacid_dh_C PF02826.19 gi|89256991|ref|YP_514353.1| - 0.00051 19.4 0.1 0.0011 18.3 0.0 1.6 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain THF_DHG_CYH_C PF02882.19 gi|89256991|ref|YP_514353.1| - 0.0025 17.1 0.1 0.0083 15.5 0.1 1.9 1 1 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NAD_binding_7 PF13241.6 gi|89256991|ref|YP_514353.1| - 0.014 15.8 0.0 0.057 13.9 0.0 1.9 1 0 0 1 1 1 0 Putative NAD(P)-binding NAD_binding_2 PF03446.15 gi|89256991|ref|YP_514353.1| - 0.038 14.2 0.2 0.35 11.0 0.0 2.3 2 1 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase AlaDh_PNT_C PF01262.21 gi|89256991|ref|YP_514353.1| - 0.11 11.8 0.2 0.23 10.7 0.2 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain TPR_21 PF09976.9 gi|89256992|ref|YP_514354.1| - 2.4e-21 76.3 0.3 2e-20 73.3 0.3 1.9 1 1 0 1 1 1 1 Tetratricopeptide repeat-like domain TPR_6 PF13174.6 gi|89256992|ref|YP_514354.1| - 1.5e-10 41.0 1.5 0.22 12.2 0.0 4.9 4 1 1 5 5 5 3 Tetratricopeptide repeat TPR_2 PF07719.17 gi|89256992|ref|YP_514354.1| - 2.9e-08 33.2 0.4 0.0031 17.5 0.1 4.3 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_19 PF14559.6 gi|89256992|ref|YP_514354.1| - 1e-07 32.4 0.9 1.9e-05 25.1 0.1 2.9 2 1 1 3 3 3 1 Tetratricopeptide repeat TPR_1 PF00515.28 gi|89256992|ref|YP_514354.1| - 3e-07 30.0 3.2 0.0013 18.4 0.1 4.1 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_17 PF13431.6 gi|89256992|ref|YP_514354.1| - 7e-06 26.1 2.7 0.1 13.0 0.0 4.2 4 1 0 4 4 4 2 Tetratricopeptide repeat TPR_16 PF13432.6 gi|89256992|ref|YP_514354.1| - 9.8e-06 26.1 0.0 8e-05 23.2 0.0 2.1 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_8 PF13181.6 gi|89256992|ref|YP_514354.1| - 0.00024 21.0 3.8 0.28 11.5 0.2 4.3 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_14 PF13428.6 gi|89256992|ref|YP_514354.1| - 0.0014 19.3 0.0 3.4 8.7 0.0 3.5 3 1 1 4 4 3 1 Tetratricopeptide repeat TPR_15 PF13429.6 gi|89256992|ref|YP_514354.1| - 0.013 14.8 0.1 0.038 13.2 0.1 1.8 1 1 0 1 1 1 0 Tetratricopeptide repeat DcuA_DcuB PF03605.14 gi|89256992|ref|YP_514354.1| - 0.043 12.7 0.2 0.052 12.4 0.2 1.2 1 0 0 1 1 1 0 Anaerobic c4-dicarboxylate membrane transporter TPR_20 PF14561.6 gi|89256992|ref|YP_514354.1| - 0.085 13.2 0.1 0.25 11.7 0.1 1.8 1 1 0 1 1 1 0 Tetratricopeptide repeat TPR_11 PF13414.6 gi|89256992|ref|YP_514354.1| - 6.3 6.6 8.9 4.1 7.2 0.2 4.0 3 1 1 4 4 4 0 TPR repeat PQQ_2 PF13360.6 gi|89256993|ref|YP_514355.1| - 4.6e-54 183.5 0.0 3.6e-38 131.5 0.0 3.1 1 1 2 3 3 3 3 PQQ-like domain PQQ_3 PF13570.6 gi|89256993|ref|YP_514355.1| - 7.8e-28 96.2 3.8 5.1e-08 33.2 0.0 7.4 8 0 0 8 8 8 6 PQQ-like domain PQQ PF01011.21 gi|89256993|ref|YP_514355.1| - 1e-27 94.7 13.5 0.00087 19.1 0.0 8.2 8 0 0 8 8 8 7 PQQ enzyme repeat DUF4905 PF16248.5 gi|89256993|ref|YP_514355.1| - 3.1 7.8 4.9 77 3.3 0.0 4.4 4 2 0 4 4 4 0 Domain of unknown function (DUF4905) MFS_1 PF07690.16 gi|89256994|ref|YP_514356.1| - 1.7e-36 125.9 38.7 1.7e-36 125.9 38.7 1.6 1 1 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|89256994|ref|YP_514356.1| - 1.1e-11 44.3 13.6 1.1e-11 44.3 13.6 2.2 1 1 1 2 2 2 1 Sugar (and other) transporter TRI12 PF06609.13 gi|89256994|ref|YP_514356.1| - 3.1e-07 29.2 5.1 3.1e-07 29.2 5.1 2.3 2 1 0 2 2 2 1 Fungal trichothecene efflux pump (TRI12) DNA_gyraseB PF00204.25 gi|89256995|ref|YP_514357.1| - 1e-39 135.8 2.4 1.5e-39 135.3 0.2 2.1 2 0 0 2 2 2 1 DNA gyrase B DNA_gyraseB_C PF00986.21 gi|89256995|ref|YP_514357.1| - 1.8e-20 72.9 0.2 3.5e-20 71.9 0.2 1.5 1 0 0 1 1 1 1 DNA gyrase B subunit, carboxyl terminus HATPase_c PF02518.26 gi|89256995|ref|YP_514357.1| - 2.5e-19 69.8 1.0 1.1e-18 67.8 0.3 2.3 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Toprim PF01751.22 gi|89256995|ref|YP_514357.1| - 1e-14 54.6 0.0 3.4e-14 52.9 0.0 1.9 1 0 0 1 1 1 1 Toprim domain TOPRIM_C PF16898.5 gi|89256995|ref|YP_514357.1| - 1.5e-05 25.2 0.0 0.00015 22.0 0.0 2.3 2 0 0 2 2 2 1 C-terminal associated domain of TOPRIM HATPase_c_3 PF13589.6 gi|89256995|ref|YP_514357.1| - 0.00028 20.7 0.1 0.0008 19.3 0.1 1.9 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Trans_coact PF16805.5 gi|89256995|ref|YP_514357.1| - 0.015 15.4 0.0 0.11 12.6 0.0 2.4 2 0 0 2 2 2 0 Phage late-transcription coactivator TSNR_N PF04705.12 gi|89256995|ref|YP_514357.1| - 0.047 13.8 0.0 0.13 12.3 0.0 1.7 1 0 0 1 1 1 0 Thiostrepton-resistance methylase, N terminus Amidase_2 PF01510.25 gi|89256996|ref|YP_514358.1| - 2.7e-26 92.5 0.0 3.3e-26 92.2 0.0 1.1 1 0 0 1 1 1 1 N-acetylmuramoyl-L-alanine amidase MHC_I PF00129.18 gi|89256996|ref|YP_514358.1| - 0.085 12.4 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 Class I Histocompatibility antigen, domains alpha 1 and 2 PAP2 PF01569.21 gi|89256997|ref|YP_514359.1| - 1.3e-21 76.8 6.8 1.3e-21 76.8 6.8 2.2 2 1 0 2 2 2 1 PAP2 superfamily PAP2_3 PF14378.6 gi|89256997|ref|YP_514359.1| - 2e-10 40.7 8.3 5.8e-10 39.2 8.3 1.8 1 1 0 1 1 1 1 PAP2 superfamily PAP2_C PF14360.6 gi|89256997|ref|YP_514359.1| - 3.2e-06 27.6 3.4 3.2e-06 27.6 3.4 3.2 3 1 0 3 3 3 1 PAP2 superfamily C-terminal NUDIX PF00293.28 gi|89256998|ref|YP_514360.1| - 2.6e-24 85.7 0.1 3.1e-24 85.5 0.1 1.1 1 0 0 1 1 1 1 NUDIX domain Tautomerase_2 PF14552.6 gi|89256998|ref|YP_514360.1| - 0.063 13.4 0.0 0.14 12.3 0.0 1.5 1 0 0 1 1 1 0 Tautomerase enzyme Glucos_trans_II PF14264.6 gi|89256999|ref|YP_514361.1| - 1.7e-18 67.1 47.7 1.7e-18 67.1 47.7 2.2 1 1 1 2 2 2 2 Glucosyl transferase GtrII EamA PF00892.20 gi|89257000|ref|YP_514362.1| - 3.1e-16 59.8 47.1 9.2e-09 35.6 15.7 2.1 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.16 gi|89257000|ref|YP_514362.1| - 0.0003 20.2 20.4 0.00083 18.8 20.4 1.7 1 1 0 1 1 1 1 Triose-phosphate Transporter family Acid_phosphat_B PF03767.14 gi|89257001|ref|YP_514363.1| - 9e-25 87.6 0.2 9.9e-25 87.5 0.2 1.0 1 0 0 1 1 1 1 HAD superfamily, subfamily IIIB (Acid phosphatase) AOX PF01786.17 gi|89257001|ref|YP_514363.1| - 0.057 13.0 0.1 0.089 12.4 0.1 1.3 1 0 0 1 1 1 0 Alternative oxidase 3H PF02829.14 gi|89257001|ref|YP_514363.1| - 0.063 13.6 0.0 0.18 12.1 0.0 1.8 1 0 0 1 1 1 0 3H domain 2OG-FeII_Oxy PF03171.20 gi|89257002|ref|YP_514364.1| - 1.5e-13 51.1 0.0 2.7e-13 50.2 0.0 1.4 1 0 0 1 1 1 1 2OG-Fe(II) oxygenase superfamily DIOX_N PF14226.6 gi|89257002|ref|YP_514364.1| - 5.4e-05 23.9 0.0 0.00011 22.9 0.0 1.5 1 0 0 1 1 1 1 non-haem dioxygenase in morphine synthesis N-terminal Phage_integrase PF00589.22 gi|89257003|ref|YP_514365.1| - 5.2e-53 179.4 0.4 9.7e-53 178.5 0.4 1.4 2 0 0 2 2 2 1 Phage integrase family Phage_int_SAM_1 PF02899.17 gi|89257003|ref|YP_514365.1| - 5.7e-19 68.2 3.6 7.8e-19 67.8 1.0 2.4 2 1 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Integrase_1 PF12835.7 gi|89257003|ref|YP_514365.1| - 7.7e-05 22.8 0.5 0.00015 21.9 0.1 1.7 2 1 0 2 2 2 1 Integrase Phage_int_SAM_5 PF13102.6 gi|89257003|ref|YP_514365.1| - 0.00043 20.6 1.1 0.00043 20.6 1.1 2.6 2 2 0 2 2 2 1 Phage integrase SAM-like domain DUF3435 PF11917.8 gi|89257003|ref|YP_514365.1| - 0.00052 19.1 0.3 0.0008 18.5 0.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3435) Phage_int_SAM_4 PF13495.6 gi|89257003|ref|YP_514365.1| - 0.0018 18.7 6.4 0.003 18.0 0.6 3.6 3 1 0 3 3 3 1 Phage integrase, N-terminal SAM-like domain Ribosomal_L19 PF01245.20 gi|89257004|ref|YP_514366.1| - 3.5e-46 155.7 0.3 3.8e-46 155.6 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L19 tRNA_m1G_MT PF01746.21 gi|89257005|ref|YP_514367.1| - 4.6e-61 205.9 0.0 5.5e-61 205.7 0.0 1.1 1 0 0 1 1 1 1 tRNA (Guanine-1)-methyltransferase BTHB PF18410.1 gi|89257005|ref|YP_514367.1| - 0.13 12.1 0.0 0.27 11.1 0.0 1.6 1 1 0 1 1 1 0 Basic tilted helix bundle domain RimM PF01782.18 gi|89257006|ref|YP_514368.1| - 8.4e-15 54.8 0.0 1.1e-14 54.3 0.0 1.2 1 0 0 1 1 1 1 RimM N-terminal domain PRC PF05239.16 gi|89257006|ref|YP_514368.1| - 4.1e-06 26.8 1.8 9.8e-06 25.6 1.8 1.6 1 0 0 1 1 1 1 PRC-barrel domain Ribosomal_S16 PF00886.19 gi|89257007|ref|YP_514369.1| - 1.8e-24 85.6 0.0 2.1e-24 85.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S16 S-AdoMet_synt_C PF02773.16 gi|89257008|ref|YP_514370.1| - 1.5e-70 235.5 0.8 2.4e-69 231.7 0.1 2.3 2 0 0 2 2 2 1 S-adenosylmethionine synthetase, C-terminal domain S-AdoMet_synt_M PF02772.16 gi|89257008|ref|YP_514370.1| - 7.3e-45 152.1 0.1 3.5e-44 149.9 0.0 2.1 3 0 0 3 3 3 1 S-adenosylmethionine synthetase, central domain S-AdoMet_synt_N PF00438.20 gi|89257008|ref|YP_514370.1| - 1.3e-41 141.3 0.1 1.3e-41 141.3 0.1 2.0 3 0 0 3 3 3 1 S-adenosylmethionine synthetase, N-terminal domain AdoMet_Synthase PF01941.19 gi|89257008|ref|YP_514370.1| - 0.16 10.7 1.6 3.1 6.5 0.1 2.2 1 1 1 2 2 2 0 S-adenosylmethionine synthetase (AdoMet synthetase) FA_desaturase PF00487.24 gi|89257009|ref|YP_514371.1| - 2.1e-17 63.8 16.9 2.1e-17 63.8 16.9 1.5 1 1 1 2 2 2 1 Fatty acid desaturase EcsB PF05975.12 gi|89257009|ref|YP_514371.1| - 0.0019 17.1 4.1 0.0041 16.0 4.1 1.4 1 0 0 1 1 1 1 Bacterial ABC transporter protein EcsB RseC_MucC PF04246.12 gi|89257009|ref|YP_514371.1| - 0.14 12.1 8.3 0.3 11.0 0.9 2.3 2 0 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC DUF2069 PF09842.9 gi|89257009|ref|YP_514371.1| - 1.4 9.2 9.4 0.55 10.5 0.8 2.4 2 0 0 2 2 2 0 Predicted membrane protein (DUF2069) Phage_holin_3_6 PF07332.11 gi|89257009|ref|YP_514371.1| - 5.7 7.0 10.6 1.3 9.1 1.1 2.5 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III Peptidase_M22 PF00814.25 gi|89257010|ref|YP_514372.1| - 1.1e-96 323.7 0.0 1.2e-96 323.6 0.0 1.0 1 0 0 1 1 1 1 Glycoprotease family Carbam_trans_N PF02543.15 gi|89257010|ref|YP_514372.1| - 4.9e-05 23.2 0.0 0.0025 17.5 0.0 2.1 1 1 0 2 2 2 2 Carbamoyltransferase N-terminus Glucosamine_iso PF01182.20 gi|89257010|ref|YP_514372.1| - 0.078 12.8 0.0 0.17 11.8 0.0 1.5 1 0 0 1 1 1 0 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase LapA_dom PF06305.11 gi|89257011|ref|YP_514373.1| - 3.2e-09 36.5 1.3 3.2e-09 36.5 1.3 1.9 1 1 1 2 2 2 1 Lipopolysaccharide assembly protein A domain DUF4149 PF13664.6 gi|89257011|ref|YP_514373.1| - 0.0042 17.4 2.5 0.0048 17.2 2.5 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4149) DUF2456 PF10445.9 gi|89257011|ref|YP_514373.1| - 0.031 14.3 2.3 0.038 14.1 2.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2456) ABC2_membrane_3 PF12698.7 gi|89257011|ref|YP_514373.1| - 1.7 7.7 13.9 1.9 7.5 13.9 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein DHHC PF01529.20 gi|89257011|ref|YP_514373.1| - 4.7 7.3 6.5 5.1 7.2 6.5 1.1 1 0 0 1 1 1 0 DHHC palmitoyltransferase RNA_pol_Rpb1_1 PF04997.12 gi|89257012|ref|YP_514374.1| - 4.6e-87 292.3 1.6 1.1e-86 291.0 0.0 2.3 3 0 0 3 3 3 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_5 PF04998.17 gi|89257012|ref|YP_514374.1| - 1.3e-67 228.1 0.5 2.5e-67 227.1 0.5 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 RNA_pol_Rpb1_2 PF00623.20 gi|89257012|ref|YP_514374.1| - 5e-38 130.9 0.0 1.4e-27 96.9 0.0 2.6 1 1 1 2 2 2 2 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.18 gi|89257012|ref|YP_514374.1| - 1.9e-27 96.1 0.1 4.7e-27 94.8 0.1 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_4 PF05000.17 gi|89257012|ref|YP_514374.1| - 3.7e-18 65.4 3.4 6.2e-18 64.7 2.3 2.0 2 0 0 2 2 2 1 RNA polymerase Rpb1, domain 4 Apocytochr_F_C PF01333.19 gi|89257012|ref|YP_514374.1| - 0.014 15.4 4.3 0.37 10.8 0.0 3.5 3 0 0 3 3 3 0 Apocytochrome F, C-terminal RNA_pol_Rpb2_6 PF00562.28 gi|89257013|ref|YP_514375.1| - 9.2e-162 538.6 0.1 1.6e-159 531.1 0.1 3.1 2 1 0 2 2 2 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_1 PF04563.15 gi|89257013|ref|YP_514375.1| - 1e-38 132.9 0.0 3.1e-38 131.3 0.0 1.8 1 1 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_3 PF04565.16 gi|89257013|ref|YP_514375.1| - 1.2e-30 105.5 0.0 3.5e-30 104.0 0.0 1.9 2 0 0 2 2 2 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_2 PF04561.14 gi|89257013|ref|YP_514375.1| - 1.9e-27 96.2 0.3 5.5e-17 62.0 0.0 2.8 2 0 0 2 2 2 2 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_45 PF10385.9 gi|89257013|ref|YP_514375.1| - 5e-26 90.8 3.1 1.6e-25 89.1 1.1 3.0 3 0 0 3 3 3 1 RNA polymerase beta subunit external 1 domain RNA_pol_Rpb2_7 PF04560.20 gi|89257013|ref|YP_514375.1| - 1.1e-23 83.4 0.0 3.1e-23 82.0 0.0 1.8 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 DUF5499 PF17603.2 gi|89257013|ref|YP_514375.1| - 3.6 8.3 6.6 7.4 7.2 0.3 3.6 3 0 0 3 3 3 0 Family of unknown function (DUF5499) Ribosomal_L12 PF00542.19 gi|89257014|ref|YP_514376.1| - 1.9e-29 101.8 7.3 4e-29 100.8 7.3 1.5 1 0 0 1 1 1 1 Ribosomal protein L7/L12 C-terminal domain Ribosomal_L12_N PF16320.5 gi|89257014|ref|YP_514376.1| - 7.8e-17 60.7 6.4 7.8e-17 60.7 6.4 2.6 2 0 0 2 2 2 1 Ribosomal protein L7/L12 dimerisation domain MCR_alpha PF02249.17 gi|89257014|ref|YP_514376.1| - 0.052 14.0 0.2 0.084 13.3 0.1 1.4 1 1 0 1 1 1 0 Methyl-coenzyme M reductase alpha subunit, C-terminal domain DUF1381 PF07129.11 gi|89257014|ref|YP_514376.1| - 0.13 12.2 1.9 0.13 12.1 0.3 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1381) Ribosomal_L10 PF00466.20 gi|89257015|ref|YP_514377.1| - 1.3e-27 95.8 0.2 2.1e-27 95.1 0.2 1.3 1 0 0 1 1 1 1 Ribosomal protein L10 Ribosomal_L1 PF00687.21 gi|89257016|ref|YP_514378.1| - 2.1e-50 171.3 0.1 2.8e-50 170.9 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family Ribosomal_L11_N PF03946.14 gi|89257017|ref|YP_514379.1| - 2.6e-32 110.4 0.3 5.1e-32 109.5 0.3 1.5 1 0 0 1 1 1 1 Ribosomal protein L11, N-terminal domain Ribosomal_L11 PF00298.19 gi|89257017|ref|YP_514379.1| - 1.2e-27 96.1 0.7 2.1e-27 95.4 0.7 1.4 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain NusG PF02357.19 gi|89257018|ref|YP_514380.1| - 9.4e-25 87.0 0.1 1.6e-24 86.2 0.1 1.4 1 0 0 1 1 1 1 Transcription termination factor nusG KOW PF00467.29 gi|89257018|ref|YP_514380.1| - 1.7e-07 31.0 0.2 4.2e-07 29.7 0.2 1.7 1 0 0 1 1 1 1 KOW motif Spt5-NGN PF03439.13 gi|89257018|ref|YP_514380.1| - 0.0052 16.7 0.0 0.026 14.4 0.0 2.1 1 1 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section SecE PF00584.20 gi|161353779|ref|YP_514381.2| - 1.3e-15 57.1 7.0 1.3e-15 57.1 7.0 3.2 3 1 0 3 3 3 1 SecE/Sec61-gamma subunits of protein translocation complex DUF996 PF06195.13 gi|161353779|ref|YP_514381.2| - 0.0088 16.3 12.0 0.021 15.1 11.7 1.7 1 1 1 2 2 2 2 Protein of unknown function (DUF996) MpPF26 PF07666.11 gi|161353779|ref|YP_514381.2| - 0.0089 16.1 9.7 0.022 14.9 1.4 2.1 2 0 0 2 2 2 2 M penetrans paralogue family 26 DUF805 PF05656.14 gi|161353779|ref|YP_514381.2| - 0.016 15.6 7.1 0.026 14.9 7.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF805) DUF1616 PF07760.11 gi|161353779|ref|YP_514381.2| - 0.21 10.9 6.9 0.27 10.6 6.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1616) SpoIIIAC PF06686.11 gi|161353779|ref|YP_514381.2| - 0.29 11.3 10.2 1.2 9.4 1.7 2.5 2 1 0 2 2 2 0 Stage III sporulation protein AC/AD protein family DUF4271 PF14093.6 gi|161353779|ref|YP_514381.2| - 0.32 10.9 12.5 0.18 11.7 0.9 2.1 1 1 0 2 2 2 0 Domain of unknown function (DUF4271) DUF4366 PF14283.6 gi|161353779|ref|YP_514381.2| - 0.82 9.7 3.9 1 9.4 0.1 2.4 2 1 1 3 3 3 0 Domain of unknown function (DUF4366) Asp4 PF16996.5 gi|161353779|ref|YP_514381.2| - 1.8 8.4 10.5 6.2 6.7 1.7 3.1 3 0 0 3 3 3 0 Accessory secretory protein Sec Asp4 TRIQK PF15168.6 gi|161353779|ref|YP_514381.2| - 2.6 8.0 13.5 2.5 8.1 0.2 3.1 3 1 1 4 4 4 0 Triple QxxK/R motif-containing protein family MRVI1 PF05781.12 gi|161353779|ref|YP_514381.2| - 2.8 6.5 6.4 0.85 8.2 0.4 2.1 2 0 0 2 2 2 0 MRVI1 protein DUF5383 PF17355.2 gi|161353779|ref|YP_514381.2| - 5.8 7.3 8.4 18 5.7 0.1 2.8 3 0 0 3 3 3 0 Family of unknown function (DUF5383) SLATT_fungal PF18142.1 gi|161353779|ref|YP_514381.2| - 9.7 6.2 9.3 0.31 11.0 2.6 1.8 1 1 1 2 2 2 0 SMODS and SLOG-associating 2TM effector domain GTP_EFTU PF00009.27 gi|89257020|ref|YP_514382.1| - 2.9e-59 199.9 0.1 3.8e-59 199.5 0.1 1.1 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.17 gi|89257020|ref|YP_514382.1| - 5.2e-35 120.1 0.0 1.1e-34 119.1 0.0 1.6 1 0 0 1 1 1 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.25 gi|89257020|ref|YP_514382.1| - 4.9e-19 68.5 6.0 1.2e-18 67.2 6.0 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|89257020|ref|YP_514382.1| - 0.0001 22.4 0.0 0.00019 21.5 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|89257020|ref|YP_514382.1| - 0.011 15.6 0.0 0.034 14.1 0.0 1.8 2 0 0 2 2 2 0 RsgA GTPase cobW PF02492.19 gi|89257020|ref|YP_514382.1| - 0.028 14.0 0.2 0.093 12.3 0.0 1.8 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 gi|89257021|ref|YP_514383.1| - 2.1e-16 60.2 0.0 3.3e-16 59.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|89257021|ref|YP_514383.1| - 2.3e-12 47.5 0.1 7e-12 45.9 0.0 1.9 2 0 0 2 2 2 1 AAA domain UvrD_C_2 PF13538.6 gi|89257021|ref|YP_514383.1| - 5.7e-12 45.3 0.1 1.3e-11 44.2 0.1 1.6 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain Viral_helicase1 PF01443.18 gi|89257021|ref|YP_514383.1| - 1.5e-10 41.2 0.1 3.1e-06 27.1 0.0 2.4 2 0 0 2 2 2 2 Viral (Superfamily 1) RNA helicase UvrD_C PF13361.6 gi|89257021|ref|YP_514383.1| - 9.6e-06 25.2 0.2 2.7e-05 23.7 0.0 1.8 2 0 0 2 2 2 1 UvrD-like helicase C-terminal domain PIF1 PF05970.14 gi|89257021|ref|YP_514383.1| - 4e-05 22.9 0.1 6.8e-05 22.2 0.1 1.6 1 1 0 1 1 1 1 PIF1-like helicase MS_channel PF00924.18 gi|89257022|ref|YP_514384.1| - 4.6e-17 62.2 4.4 4.6e-17 62.2 4.4 2.0 2 0 0 2 2 2 1 Mechanosensitive ion channel TM_helix PF05552.12 gi|89257022|ref|YP_514384.1| - 9.1e-05 22.4 1.1 9.1e-05 22.4 1.1 2.1 2 0 0 2 2 2 1 Conserved TM helix DUF2177 PF09945.9 gi|89257022|ref|YP_514384.1| - 0.056 13.5 4.3 0.074 13.1 4.3 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2177) PelG PF16933.5 gi|89257022|ref|YP_514384.1| - 0.09 11.6 8.4 0.12 11.2 8.4 1.1 1 0 0 1 1 1 0 Putative exopolysaccharide Exporter (EPS-E) DUF4481 PF14800.6 gi|89257022|ref|YP_514384.1| - 0.48 9.9 4.8 0.64 9.4 4.8 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4481) FtsX PF02687.21 gi|89257022|ref|YP_514384.1| - 3.7 8.1 12.3 2.3 8.7 9.0 2.0 1 1 1 2 2 2 0 FtsX-like permease family DUF4191 PF13829.6 gi|89257022|ref|YP_514384.1| - 9.8 5.5 8.4 0.59 9.4 2.7 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4191) MIP PF00230.20 gi|89257024|ref|YP_514386.1| - 2.6e-43 148.4 13.6 5.1e-43 147.4 13.6 1.4 1 1 0 1 1 1 1 Major intrinsic protein DAO PF01266.24 gi|89257025|ref|YP_514387.1| - 1.4e-45 156.5 0.0 1.8e-45 156.0 0.0 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase DAO_C PF16901.5 gi|89257025|ref|YP_514387.1| - 4e-24 84.9 0.3 1.1e-23 83.5 0.3 1.7 1 1 0 1 1 1 1 C-terminal domain of alpha-glycerophosphate oxidase FAD_binding_2 PF00890.24 gi|89257025|ref|YP_514387.1| - 2.2e-07 30.3 0.4 0.00021 20.5 0.4 2.2 2 0 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.7 gi|89257025|ref|YP_514387.1| - 1.3e-06 28.0 0.0 8.4e-05 22.1 0.0 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|89257025|ref|YP_514387.1| - 4.5e-06 26.0 2.1 0.0059 15.7 0.3 2.3 2 0 0 2 2 2 2 Glucose inhibited division protein A FAD_binding_3 PF01494.19 gi|89257025|ref|YP_514387.1| - 8.8e-06 25.2 0.0 2.4e-05 23.8 0.0 1.7 1 1 0 1 1 1 1 FAD binding domain Pyr_redox_3 PF13738.6 gi|89257025|ref|YP_514387.1| - 9.1e-06 25.1 0.2 0.0028 16.9 0.0 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 gi|89257025|ref|YP_514387.1| - 9.1e-06 25.1 2.6 0.00013 21.4 2.6 2.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|89257025|ref|YP_514387.1| - 1.6e-05 23.8 1.0 6.8e-05 21.7 0.2 2.2 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_8 PF13450.6 gi|89257025|ref|YP_514387.1| - 0.005 17.0 0.2 0.012 15.8 0.2 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|89257025|ref|YP_514387.1| - 0.093 12.0 0.7 0.19 10.9 0.1 1.7 2 0 0 2 2 2 0 Thi4 family DDE_3 PF13358.6 gi|89257026|ref|YP_514388.1| - 2.3e-30 105.3 0.1 7.9e-30 103.5 0.0 1.8 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.16 gi|89257026|ref|YP_514388.1| - 0.0029 17.6 1.5 0.0084 16.2 0.6 2.3 2 1 0 2 2 2 1 Transposase HTH_29 PF13551.6 gi|89257026|ref|YP_514388.1| - 0.0033 17.4 0.0 0.008 16.2 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn helix HTH_40 PF14493.6 gi|89257026|ref|YP_514388.1| - 0.0099 16.3 0.1 0.069 13.6 0.0 2.3 3 1 0 3 3 3 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|89257026|ref|YP_514388.1| - 0.026 14.6 0.0 0.073 13.2 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|89257026|ref|YP_514388.1| - 0.12 12.2 0.0 0.34 10.8 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain rve PF00665.26 gi|89257026|ref|YP_514388.1| - 0.15 12.3 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 Integrase core domain DDE_Tnp_ISAZ013 PF07592.11 gi|89257026|ref|YP_514388.1| - 0.17 10.9 0.3 1.1 8.1 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain ATP-grasp_3 PF02655.14 gi|89257028|ref|YP_514390.1| - 5.5e-08 33.0 0.0 1e-07 32.2 0.0 1.5 1 1 0 1 1 1 1 ATP-grasp domain PGM1_C PF18105.1 gi|89257028|ref|YP_514390.1| - 0.0077 15.7 0.0 0.017 14.6 0.0 1.5 1 0 0 1 1 1 1 PGM1 C-terminal domain ATPgrasp_Ter PF15632.6 gi|89257028|ref|YP_514390.1| - 0.011 15.5 0.0 0.024 14.4 0.0 1.5 1 0 0 1 1 1 0 ATP-grasp in the biosynthetic pathway with Ter operon FGase PF05013.12 gi|89257029|ref|YP_514391.1| - 0.04 14.1 0.0 0.066 13.4 0.0 1.4 1 1 0 1 1 1 0 N-formylglutamate amidohydrolase HATPase_c PF02518.26 gi|89257031|ref|YP_514393.1| - 6.6e-23 81.4 0.3 1.7e-22 80.0 0.3 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|89257031|ref|YP_514393.1| - 6.2e-13 48.6 0.1 1.4e-12 47.5 0.1 1.6 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.6 gi|89257031|ref|YP_514393.1| - 0.00073 19.4 0.7 0.00073 19.4 0.7 2.8 3 0 0 3 3 3 1 GHKL domain HATPase_c_2 PF13581.6 gi|89257031|ref|YP_514393.1| - 0.0029 17.5 0.0 0.011 15.6 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 gi|89257031|ref|YP_514393.1| - 0.007 16.2 0.4 0.039 13.8 0.4 2.2 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Sigma_reg_N PF13800.6 gi|89257031|ref|YP_514393.1| - 0.0078 16.5 0.8 0.0078 16.5 0.8 3.0 3 0 0 3 3 3 1 Sigma factor regulator N-terminal DUF948 PF06103.11 gi|89257031|ref|YP_514393.1| - 0.034 14.4 2.3 0.24 11.7 0.1 2.9 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF948) DUF3800 PF12686.7 gi|89257031|ref|YP_514393.1| - 0.18 12.4 6.1 1e+02 3.5 6.1 3.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3800) DASH_Duo1 PF08651.10 gi|89257031|ref|YP_514393.1| - 1.3 8.8 6.9 15 5.5 0.1 3.6 4 0 0 4 4 4 0 DASH complex subunit Duo1 Tho1_MOS11_C PF18592.1 gi|89257031|ref|YP_514393.1| - 2.4 8.1 5.4 20 5.1 0.2 3.1 3 0 0 3 3 3 0 Tho1/MOS11 C-terminal domain 4HB_MCP_1 PF12729.7 gi|89257031|ref|YP_514393.1| - 8.6 5.9 12.7 19 4.8 0.4 3.3 2 1 0 2 2 2 0 Four helix bundle sensory module for signal transduction DUF1731 PF08338.11 gi|89257032|ref|YP_514394.1| - 4.5e-15 55.2 0.0 9.2e-15 54.2 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1731) Epimerase PF01370.21 gi|89257032|ref|YP_514394.1| - 4.5e-06 26.3 0.0 8.4e-06 25.4 0.0 1.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family RAWUL PF16207.5 gi|89257032|ref|YP_514394.1| - 0.12 13.1 0.3 47 4.8 0.0 3.2 3 0 0 3 3 3 0 RAWUL domain RING finger- and WD40-associated ubiquitin-like Cyt_bd_oxida_II PF02322.15 gi|89257033|ref|YP_514395.1| - 2.1e-67 227.6 33.0 2.4e-67 227.4 33.0 1.0 1 0 0 1 1 1 1 Cytochrome bd terminal oxidase subunit II DUF3429 PF11911.8 gi|89257034|ref|YP_514396.1| - 3.3e-21 76.1 5.4 3.9e-21 75.8 5.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3429) T2SSE PF00437.20 gi|89257035|ref|YP_514397.1| - 1.4e-29 103.0 1.9 1.4e-29 103.0 1.9 1.5 2 0 0 2 2 2 1 Type II/IV secretion system protein DUF3313 PF11769.8 gi|89257035|ref|YP_514397.1| - 0.1 12.4 0.1 0.3 10.9 0.0 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF3313) HORMA PF02301.18 gi|89257036|ref|YP_514398.1| - 0.015 14.9 0.0 0.021 14.4 0.0 1.2 1 0 0 1 1 1 0 HORMA domain Aconitase PF00330.20 gi|89257037|ref|YP_514399.1| - 4.6e-176 586.4 0.0 6.1e-176 585.9 0.0 1.1 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.19 gi|89257037|ref|YP_514399.1| - 1.3e-45 154.9 0.0 2.9e-45 153.8 0.0 1.6 1 0 0 1 1 1 1 Aconitase C-terminal domain TyeA PF09059.10 gi|89257037|ref|YP_514399.1| - 0.15 12.2 0.0 0.39 10.8 0.0 1.7 1 0 0 1 1 1 0 TyeA Dyp_perox PF04261.12 gi|89257038|ref|YP_514400.1| - 2.6e-18 66.1 0.0 3.3e-18 65.8 0.0 1.1 1 0 0 1 1 1 1 Dyp-type peroxidase family Corazonin PF17308.2 gi|89257038|ref|YP_514400.1| - 0.031 14.6 0.0 0.056 13.8 0.0 1.4 1 0 0 1 1 1 0 Pro-corazonin GtrA PF04138.14 gi|89257039|ref|YP_514401.1| - 2.2e-19 69.8 22.8 2.5e-19 69.6 22.8 1.0 1 0 0 1 1 1 1 GtrA-like protein Gsf2 PF11055.8 gi|89257039|ref|YP_514401.1| - 0.7 8.6 4.8 0.35 9.6 3.3 1.3 1 1 0 1 1 1 0 Glucose signalling factor 2 DUF4229 PF14012.6 gi|89257039|ref|YP_514401.1| - 3.6 7.8 11.1 0.098 12.8 2.3 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF4229) Radical_SAM PF04055.21 gi|89257040|ref|YP_514402.1| - 6.1e-16 59.2 0.1 1.4e-15 58.1 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily HemN_C PF06969.16 gi|89257040|ref|YP_514402.1| - 4.3e-10 39.5 0.0 9.2e-10 38.5 0.0 1.6 1 0 0 1 1 1 1 HemN C-terminal domain Fer4_14 PF13394.6 gi|89257040|ref|YP_514402.1| - 1.5e-05 25.1 0.2 3.9e-05 23.8 0.0 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|89257040|ref|YP_514402.1| - 0.0041 17.4 0.0 0.013 15.8 0.0 1.9 1 0 0 1 1 1 1 4Fe-4S single cluster domain PepSY_2 PF13670.6 gi|89257041|ref|YP_514403.1| - 4.2e-19 68.3 0.2 4.5e-13 49.0 0.0 2.0 1 1 1 2 2 2 2 Peptidase propeptide and YPEB domain PepSY PF03413.19 gi|89257041|ref|YP_514403.1| - 9.4e-07 29.3 1.1 0.00042 20.8 0.0 2.2 2 0 0 2 2 2 2 Peptidase propeptide and YPEB domain HCBP_related PF06594.11 gi|89257041|ref|YP_514403.1| - 0.0051 16.7 0.9 0.017 15.1 0.4 2.1 2 0 0 2 2 2 1 Haemolysin-type calcium binding protein related domain OST_IS PF18246.1 gi|89257041|ref|YP_514403.1| - 0.038 14.3 0.3 0.11 12.8 0.1 1.8 1 1 0 1 1 1 0 Oligosaccharyltransferase Insert domain SecG PF03840.14 gi|89257042|ref|YP_514404.1| - 9.3e-20 70.5 12.0 1.6e-19 69.8 12.0 1.4 1 0 0 1 1 1 1 Preprotein translocase SecG subunit CYYR1 PF10873.8 gi|89257042|ref|YP_514404.1| - 0.19 12.2 1.5 0.21 12.0 0.9 1.5 1 1 0 1 1 1 0 Cysteine and tyrosine-rich protein 1 DUF5090 PF17009.5 gi|89257042|ref|YP_514404.1| - 0.22 11.4 4.2 0.26 11.2 4.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5090) Peptidase_S49_N PF08496.10 gi|89257042|ref|YP_514404.1| - 0.23 11.5 1.6 0.48 10.5 0.0 1.9 2 0 0 2 2 2 0 Peptidase family S49 N-terminal Cytochrom_B_C PF00032.17 gi|89257042|ref|YP_514404.1| - 0.27 11.5 2.4 0.83 10.0 2.4 1.8 1 1 0 1 1 1 0 Cytochrome b(C-terminal)/b6/petD TIM PF00121.18 gi|89257043|ref|YP_514405.1| - 2.9e-86 288.8 0.2 3.3e-86 288.6 0.2 1.0 1 0 0 1 1 1 1 Triosephosphate isomerase PEP_hydrolase PF09370.10 gi|89257043|ref|YP_514405.1| - 0.066 12.4 0.1 0.19 10.9 0.0 1.7 2 0 0 2 2 2 0 Phosphoenolpyruvate hydrolase-like PGM_PMM_I PF02878.16 gi|89257044|ref|YP_514406.1| - 2.8e-39 134.0 0.1 6.8e-39 132.7 0.1 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_III PF02880.16 gi|89257044|ref|YP_514406.1| - 1.3e-23 83.4 0.0 2.7e-23 82.3 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_II PF02879.16 gi|89257044|ref|YP_514406.1| - 6.7e-19 68.4 0.1 1.5e-18 67.3 0.1 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.20 gi|89257044|ref|YP_514406.1| - 2.6e-16 59.6 1.0 6e-16 58.4 1.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Pribosyltran PF00156.27 gi|89257045|ref|YP_514407.1| - 2.1e-14 53.3 0.1 3.2e-14 52.7 0.1 1.3 1 1 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|89257045|ref|YP_514407.1| - 0.00072 19.1 0.0 0.0016 17.9 0.0 1.6 2 0 0 2 2 2 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|89257045|ref|YP_514407.1| - 0.047 13.2 0.1 0.11 11.9 0.1 1.6 2 0 0 2 2 2 0 Phosphoribosyl transferase 2-oxoacid_dh PF00198.23 gi|89257046|ref|YP_514408.1| - 4.4e-83 278.3 1.7 9.7e-83 277.2 0.1 1.9 2 0 0 2 2 2 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Biotin_lipoyl PF00364.22 gi|89257046|ref|YP_514408.1| - 1.7e-39 133.5 6.4 3.4e-19 68.4 1.1 2.6 2 0 0 2 2 2 2 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 gi|89257046|ref|YP_514408.1| - 4.5e-14 52.0 0.2 9.6e-06 25.3 0.0 3.2 2 1 1 3 3 3 2 Biotin-lipoyl like HlyD_3 PF13437.6 gi|89257046|ref|YP_514408.1| - 5.8e-09 36.6 7.1 0.0041 17.8 0.1 4.2 3 1 1 4 4 4 2 HlyD family secretion protein E3_binding PF02817.17 gi|89257046|ref|YP_514408.1| - 3.3e-08 33.7 0.1 8.7e-08 32.4 0.1 1.8 1 0 0 1 1 1 1 e3 binding domain RnfC_N PF13375.6 gi|89257046|ref|YP_514408.1| - 7.8e-05 22.6 0.6 0.077 13.0 0.0 2.9 2 1 1 3 3 3 2 RnfC Barrel sandwich hybrid domain QRPTase_N PF02749.16 gi|89257046|ref|YP_514408.1| - 0.00015 21.8 0.2 0.36 10.9 0.0 3.0 2 1 1 3 3 3 2 Quinolinate phosphoribosyl transferase, N-terminal domain T2SSB PF16537.5 gi|89257046|ref|YP_514408.1| - 0.00056 19.5 0.8 0.77 9.4 0.0 3.0 3 0 0 3 3 3 2 Type II secretion system protein B GCV_H PF01597.19 gi|89257046|ref|YP_514408.1| - 0.0018 18.1 4.7 0.84 9.5 0.5 3.7 3 2 2 5 5 5 2 Glycine cleavage H-protein PYNP_C PF07831.13 gi|89257046|ref|YP_514408.1| - 0.015 14.9 1.3 6.9 6.4 0.0 3.9 4 0 0 4 4 4 0 Pyrimidine nucleoside phosphorylase C-terminal domain Pro_Al_protease PF02983.14 gi|89257046|ref|YP_514408.1| - 0.026 14.6 0.3 13 5.9 0.1 3.1 2 0 0 2 2 2 0 Alpha-lytic protease prodomain Transket_pyr PF02779.24 gi|89257047|ref|YP_514409.1| - 2.2e-57 193.6 0.0 3.7e-57 192.9 0.0 1.3 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain E1_dh PF00676.20 gi|89257047|ref|YP_514409.1| - 5.1e-52 176.7 0.0 8.3e-52 176.0 0.0 1.3 1 0 0 1 1 1 1 Dehydrogenase E1 component OxoGdeHyase_C PF16870.5 gi|89257047|ref|YP_514409.1| - 3.8e-43 146.8 1.0 6.9e-43 146.0 1.0 1.5 1 0 0 1 1 1 1 2-oxoglutarate dehydrogenase C-terminal 2-oxogl_dehyd_N PF16078.5 gi|89257047|ref|YP_514409.1| - 0.0014 18.2 0.0 0.0029 17.2 0.0 1.6 1 0 0 1 1 1 1 2-oxoglutarate dehydrogenase N-terminus PFOR_II PF17147.4 gi|89257047|ref|YP_514409.1| - 0.037 14.3 0.1 0.74 10.2 0.0 2.8 3 0 0 3 3 3 0 Pyruvate:ferredoxin oxidoreductase core domain II Fer2_3 PF13085.6 gi|89257048|ref|YP_514410.1| - 7.2e-33 112.9 0.0 1.1e-32 112.2 0.0 1.3 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_17 PF13534.6 gi|89257048|ref|YP_514410.1| - 2e-09 37.9 2.4 3.8e-09 37.0 2.4 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|89257048|ref|YP_514410.1| - 2.9e-09 37.2 16.2 5.2e-08 33.2 5.0 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|89257048|ref|YP_514410.1| - 1.9e-08 34.3 2.2 4.1e-08 33.2 2.2 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|89257048|ref|YP_514410.1| - 0.00037 21.0 6.1 0.0022 18.5 6.4 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|89257048|ref|YP_514410.1| - 0.0012 19.1 2.4 0.57 10.4 0.1 2.7 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|89257048|ref|YP_514410.1| - 0.0014 18.9 7.1 0.11 13.1 1.3 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|89257048|ref|YP_514410.1| - 0.0051 17.7 2.3 2.3 9.2 0.8 2.5 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|89257048|ref|YP_514410.1| - 0.04 14.1 11.2 0.035 14.3 7.6 2.4 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer2 PF00111.27 gi|89257048|ref|YP_514410.1| - 0.12 12.3 3.6 0.3 11.1 0.5 2.8 2 1 0 2 2 2 0 2Fe-2S iron-sulfur cluster binding domain Fer4 PF00037.27 gi|89257048|ref|YP_514410.1| - 5.7 6.9 15.1 3.7 7.5 0.9 2.8 2 0 0 2 2 2 0 4Fe-4S binding domain FAD_binding_2 PF00890.24 gi|89257049|ref|YP_514411.1| - 1.1e-120 403.6 2.4 1.4e-120 403.2 2.4 1.1 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.20 gi|89257049|ref|YP_514411.1| - 1.8e-37 128.2 2.1 3e-37 127.5 2.1 1.4 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.14 gi|89257049|ref|YP_514411.1| - 1.3e-05 24.6 4.4 0.00071 18.9 0.2 3.1 2 2 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|89257049|ref|YP_514411.1| - 0.00085 18.6 0.8 0.012 14.8 0.1 2.5 2 0 0 2 2 2 1 Thi4 family GIDA PF01134.22 gi|89257049|ref|YP_514411.1| - 0.0013 17.9 3.5 0.0037 16.4 1.3 2.1 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_binding_3 PF01494.19 gi|89257049|ref|YP_514411.1| - 0.013 14.8 0.1 0.024 13.9 0.1 1.4 1 0 0 1 1 1 0 FAD binding domain DAO PF01266.24 gi|89257049|ref|YP_514411.1| - 0.015 14.9 4.0 0.047 13.3 2.5 2.6 2 1 0 2 2 2 0 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|89257049|ref|YP_514411.1| - 0.034 12.8 1.5 0.044 12.5 0.2 1.9 2 0 0 2 2 2 0 HI0933-like protein FAD_oxidored PF12831.7 gi|89257049|ref|YP_514411.1| - 0.044 13.1 2.6 18 4.6 0.0 3.3 3 0 0 3 3 3 0 FAD dependent oxidoreductase Sdh_cyt PF01127.22 gi|89257050|ref|YP_514412.1| - 0.00015 21.7 16.3 0.00022 21.2 15.6 1.6 1 1 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DoxX PF07681.12 gi|89257050|ref|YP_514412.1| - 0.16 12.5 9.1 0.3 11.7 9.0 1.7 1 1 0 1 1 1 0 DoxX Sdh_cyt PF01127.22 gi|89257051|ref|YP_514413.1| - 5.8e-22 78.0 8.5 7.1e-22 77.7 8.5 1.0 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Tmemb_170 PF10190.9 gi|89257051|ref|YP_514413.1| - 0.00016 22.0 6.7 0.00016 22.0 6.7 2.0 2 0 0 2 2 2 1 Putative transmembrane protein 170 TPT PF03151.16 gi|89257051|ref|YP_514413.1| - 0.00087 18.7 6.2 0.0039 16.6 0.8 2.0 1 1 1 2 2 2 2 Triose-phosphate Transporter family DUF2456 PF10445.9 gi|89257051|ref|YP_514413.1| - 2.7 8.1 9.3 0.69 10.0 3.0 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF2456) Citrate_synt PF00285.21 gi|89257052|ref|YP_514414.1| - 4.9e-126 420.6 0.1 5.7e-126 420.4 0.1 1.0 1 0 0 1 1 1 1 Citrate synthase, C-terminal domain MFS_1 PF07690.16 gi|89257053|ref|YP_514415.1| - 3.3e-22 78.9 45.2 1.4e-12 47.2 12.6 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily Acatn PF13000.7 gi|89257053|ref|YP_514415.1| - 1.8e-08 33.4 10.9 1.8e-08 33.4 10.9 3.4 1 1 0 2 2 2 1 Acetyl-coenzyme A transporter 1 Sod_Fe_C PF02777.18 gi|89257054|ref|YP_514416.1| - 4.2e-41 139.3 1.8 1e-40 138.0 0.5 2.1 3 0 0 3 3 3 1 Iron/manganese superoxide dismutases, C-terminal domain Sod_Fe_N PF00081.22 gi|89257054|ref|YP_514416.1| - 2e-33 114.7 1.5 3.6e-33 113.9 1.5 1.5 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, alpha-hairpin domain GSCFA PF08885.11 gi|89257054|ref|YP_514416.1| - 0.037 13.7 0.3 0.042 13.5 0.3 1.2 1 0 0 1 1 1 0 GSCFA family SSV1_ORF_D-335 PF07935.11 gi|89257054|ref|YP_514416.1| - 0.1 12.9 0.5 5.6 7.3 0.1 2.3 2 0 0 2 2 2 0 ORF D-335-like protein Glutaredoxin PF00462.24 gi|89257055|ref|YP_514417.1| - 6.5e-16 58.3 0.0 9.8e-16 57.7 0.0 1.3 1 0 0 1 1 1 1 Glutaredoxin Glyco_hydro_18 PF00704.28 gi|89257056|ref|YP_514418.1| - 3.6e-18 66.4 15.0 6.3e-11 42.6 0.4 2.8 2 1 0 2 2 2 2 Glycosyl hydrolases family 18 DUF5603 PF18231.1 gi|89257056|ref|YP_514418.1| - 0.038 14.3 0.1 0.17 12.2 0.1 2.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5603) ComA PF02679.15 gi|89257056|ref|YP_514418.1| - 0.043 13.3 0.0 0.26 10.7 0.0 2.1 2 0 0 2 2 2 0 (2R)-phospho-3-sulfolactate synthase (ComA) ATP-synt_DE_N PF02823.16 gi|89257057|ref|YP_514419.1| - 1.1e-24 86.1 0.4 1.6e-24 85.6 0.4 1.2 1 0 0 1 1 1 1 ATP synthase, Delta/Epsilon chain, beta-sandwich domain ATP-synt_DE PF00401.20 gi|89257057|ref|YP_514419.1| - 0.00033 20.8 11.8 0.00033 20.8 11.8 1.4 1 1 0 1 1 1 1 ATP synthase, Delta/Epsilon chain, long alpha-helix domain FIVAR PF07554.13 gi|89257057|ref|YP_514419.1| - 0.0019 18.9 0.7 0.0027 18.4 0.7 1.2 1 0 0 1 1 1 1 FIVAR domain DUF2007 PF09413.10 gi|89257057|ref|YP_514419.1| - 0.8 9.9 3.2 3.2 8.0 0.1 3.0 2 1 2 4 4 4 0 Putative prokaryotic signal transducing protein ATP-synt_ab PF00006.25 gi|89257058|ref|YP_514420.1| - 1.7e-63 214.1 0.0 2.5e-63 213.6 0.0 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 gi|89257058|ref|YP_514420.1| - 2.1e-19 69.8 2.6 4.3e-19 68.8 2.6 1.6 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain T3SS_ATPase_C PF18269.1 gi|89257058|ref|YP_514420.1| - 0.0031 17.3 0.8 0.0092 15.8 0.8 1.8 1 1 0 1 1 1 1 T3SS EscN ATPase C-terminal domain AAA PF00004.29 gi|89257058|ref|YP_514420.1| - 0.0059 17.0 0.1 0.26 11.7 0.0 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.22 gi|89257058|ref|YP_514420.1| - 0.046 14.1 0.0 0.093 13.1 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_19 PF13245.6 gi|89257058|ref|YP_514420.1| - 0.071 13.4 0.7 0.31 11.4 0.1 2.0 2 0 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|89257058|ref|YP_514420.1| - 0.12 11.9 0.2 0.31 10.5 0.1 1.7 2 0 0 2 2 2 0 P-loop containing dynein motor region AAA_30 PF13604.6 gi|89257058|ref|YP_514420.1| - 0.13 12.0 0.1 0.28 10.9 0.1 1.5 1 0 0 1 1 1 0 AAA domain TrwB_AAD_bind PF10412.9 gi|89257058|ref|YP_514420.1| - 0.15 10.9 0.1 0.25 10.2 0.1 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain ATP-synt PF00231.19 gi|89257059|ref|YP_514421.1| - 1e-83 281.3 5.1 1.1e-83 281.2 5.1 1.0 1 0 0 1 1 1 1 ATP synthase RbpA PF13397.6 gi|89257059|ref|YP_514421.1| - 0.041 14.5 0.0 0.084 13.5 0.0 1.5 1 0 0 1 1 1 0 RNA polymerase-binding protein ATP-synt_ab PF00006.25 gi|89257060|ref|YP_514422.1| - 1.6e-74 250.1 0.0 2.9e-74 249.3 0.1 1.4 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.27 gi|89257060|ref|YP_514422.1| - 1.2e-42 145.1 0.7 2e-42 144.5 0.7 1.4 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.23 gi|89257060|ref|YP_514422.1| - 6.4e-11 42.6 0.4 1.4e-10 41.5 0.4 1.6 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.10 gi|89257060|ref|YP_514422.1| - 0.0006 19.9 0.6 0.0022 18.1 0.4 2.1 2 1 0 2 2 2 1 HAS barrel domain ATPase_2 PF01637.18 gi|89257060|ref|YP_514422.1| - 0.056 13.4 0.5 0.66 9.8 0.1 2.5 2 1 0 2 2 2 0 ATPase domain predominantly from Archaea ThaI PF15514.6 gi|89257060|ref|YP_514422.1| - 0.14 11.8 0.0 0.21 11.2 0.0 1.3 1 0 0 1 1 1 0 Restriction endonuclease ThaI OSCP PF00213.18 gi|89257061|ref|YP_514423.1| - 6.5e-47 159.8 1.0 7.3e-47 159.7 1.0 1.0 1 0 0 1 1 1 1 ATP synthase delta (OSCP) subunit HECT PF00632.25 gi|89257061|ref|YP_514423.1| - 0.13 11.8 1.4 3.8 6.9 0.3 2.1 1 1 1 2 2 2 0 HECT-domain (ubiquitin-transferase) ATP-synt_B PF00430.18 gi|89257062|ref|YP_514424.1| - 8.2e-30 103.6 18.9 9.9e-30 103.3 18.9 1.1 1 0 0 1 1 1 1 ATP synthase B/B' CF(0) ESM4 PF15952.5 gi|89257062|ref|YP_514424.1| - 0.008 16.6 0.7 0.01 16.2 0.7 1.2 1 0 0 1 1 1 1 Enhancer of split M4 family HrpE PF06188.12 gi|89257062|ref|YP_514424.1| - 0.0087 16.0 9.6 0.012 15.5 9.6 1.3 1 0 0 1 1 1 1 HrpE/YscL/FliH and V-type ATPase subunit E FliH PF02108.16 gi|89257062|ref|YP_514424.1| - 0.0089 16.1 4.1 0.0089 16.1 4.1 2.0 1 1 1 2 2 2 1 Flagellar assembly protein FliH FlaF PF07309.11 gi|89257062|ref|YP_514424.1| - 0.035 14.1 6.6 0.06 13.4 6.4 1.6 1 1 0 1 1 1 0 Flagellar protein FlaF Fibin PF15819.5 gi|89257062|ref|YP_514424.1| - 0.14 11.9 3.5 0.23 11.2 3.4 1.4 1 1 0 1 1 1 0 Fin bud initiation factor homologue ATP-synt_C PF00137.21 gi|89257063|ref|YP_514425.1| - 3.3e-07 30.6 11.0 5.4e-07 29.9 11.0 1.4 1 0 0 1 1 1 1 ATP synthase subunit C EpuA PF11772.8 gi|89257063|ref|YP_514425.1| - 0.05 13.3 1.9 0.05 13.3 1.9 2.3 2 0 0 2 2 2 0 DNA-directed RNA polymerase subunit beta ATP-synt_A PF00119.20 gi|89257064|ref|YP_514426.1| - 5.9e-53 180.0 24.9 7e-53 179.7 24.9 1.1 1 0 0 1 1 1 1 ATP synthase A chain ATP-synt_I PF03899.15 gi|89257065|ref|YP_514427.1| - 4.1e-08 33.5 14.2 6.9e-08 32.8 14.2 1.4 1 0 0 1 1 1 1 ATP synthase I chain MFS_1 PF07690.16 gi|89257066|ref|YP_514428.1| - 1.3e-32 113.1 38.1 1.3e-32 113.1 38.1 1.9 2 1 1 3 3 3 1 Major Facilitator Superfamily MFS_2 PF13347.6 gi|89257066|ref|YP_514428.1| - 2.6e-11 42.8 29.3 6.8e-11 41.4 22.1 2.5 2 1 0 2 2 2 2 MFS/sugar transport protein Sugar_tr PF00083.24 gi|89257066|ref|YP_514428.1| - 0.03 13.2 34.7 0.33 9.8 18.7 2.4 1 1 0 2 2 2 0 Sugar (and other) transporter SpoVAB PF13782.6 gi|89257066|ref|YP_514428.1| - 0.12 12.7 9.1 0.6 10.4 5.3 2.9 1 1 1 2 2 2 0 Stage V sporulation protein AB DUF2157 PF09925.9 gi|89257066|ref|YP_514428.1| - 0.3 10.9 25.3 0.064 13.0 2.3 2.9 3 0 0 3 3 3 0 Predicted membrane protein (DUF2157) PseudoU_synth_2 PF00849.22 gi|89257067|ref|YP_514429.1| - 5.8e-33 114.2 0.2 9e-33 113.6 0.2 1.3 1 0 0 1 1 1 1 RNA pseudouridylate synthase S4 PF01479.25 gi|89257067|ref|YP_514429.1| - 4.6e-07 29.4 0.3 1.3e-06 28.0 0.3 1.8 1 0 0 1 1 1 1 S4 domain HTH_17 PF12728.7 gi|89257067|ref|YP_514429.1| - 0.097 12.9 0.3 0.21 11.8 0.3 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain AFG1_ATPase PF03969.16 gi|89257068|ref|YP_514430.1| - 3.4e-108 361.8 1.0 4e-108 361.5 1.0 1.0 1 0 0 1 1 1 1 AFG1-like ATPase AAA PF00004.29 gi|89257068|ref|YP_514430.1| - 0.0016 18.9 0.0 0.015 15.7 0.0 2.4 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) WhiA_N PF10298.9 gi|89257068|ref|YP_514430.1| - 0.12 12.4 0.1 0.62 10.2 0.0 2.1 2 0 0 2 2 2 0 WhiA N-terminal LAGLIDADG-like domain SUKH_6 PF14568.6 gi|89257068|ref|YP_514430.1| - 5 7.6 7.7 2.1 8.8 0.2 3.1 3 1 0 3 3 3 0 SMI1-KNR4 cell-wall MFS_1 PF07690.16 gi|89257069|ref|YP_514431.1| - 1e-29 103.6 39.6 1e-29 103.6 39.6 1.5 2 0 0 2 2 2 1 Major Facilitator Superfamily MFS_2 PF13347.6 gi|89257069|ref|YP_514431.1| - 5.1e-07 28.6 29.2 5.1e-07 28.6 29.2 2.1 3 0 0 3 3 3 1 MFS/sugar transport protein Sugar_tr PF00083.24 gi|89257069|ref|YP_514431.1| - 3e-06 26.4 27.5 0.0019 17.1 2.5 2.4 1 1 1 2 2 2 2 Sugar (and other) transporter tRNA-synt_His PF13393.6 gi|89257070|ref|YP_514432.1| - 5.4e-47 160.6 0.0 8.2e-47 160.0 0.0 1.3 1 0 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.25 gi|89257070|ref|YP_514432.1| - 2.1e-24 86.5 0.0 3.9e-24 85.6 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|89257070|ref|YP_514432.1| - 7.9e-09 35.6 0.1 2.8e-08 33.8 0.0 1.9 2 0 0 2 2 2 1 Anticodon binding domain Pesticin PF16754.5 gi|89257070|ref|YP_514432.1| - 0.054 13.5 0.6 0.11 12.4 0.5 1.6 1 1 0 1 1 1 0 Bacterial toxin homologue of phage lysozyme, C-term tRNA-synt_2 PF00152.20 gi|89257070|ref|YP_514432.1| - 0.15 11.1 0.0 1.1 8.3 0.0 2.1 1 1 0 1 1 1 0 tRNA synthetases class II (D, K and N) RBFA PF02033.18 gi|89257071|ref|YP_514433.1| - 9.5e-28 96.7 0.3 1.4e-27 96.2 0.3 1.3 1 0 0 1 1 1 1 Ribosome-binding factor A DUF3557 PF12078.8 gi|89257071|ref|YP_514433.1| - 0.077 12.9 0.2 0.097 12.6 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3557) IF-2 PF11987.8 gi|89257072|ref|YP_514434.1| - 1.4e-37 128.0 2.3 9e-37 125.4 2.3 2.5 1 0 0 1 1 1 1 Translation-initiation factor 2 GTP_EFTU PF00009.27 gi|89257072|ref|YP_514434.1| - 5.7e-35 120.6 9.0 1.1e-34 119.7 2.1 3.3 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain IF2_N PF04760.15 gi|89257072|ref|YP_514434.1| - 1.5e-25 88.7 7.8 7.1e-17 61.0 0.8 3.4 2 0 0 2 2 2 2 Translation initiation factor IF-2, N-terminal region MMR_HSR1 PF01926.23 gi|89257072|ref|YP_514434.1| - 1.7e-10 40.9 2.3 1.8e-10 40.9 0.1 2.3 2 0 0 2 2 2 1 50S ribosome-binding GTPase Arf PF00025.21 gi|89257072|ref|YP_514434.1| - 1.4e-07 31.2 0.0 5e-07 29.3 0.0 2.0 1 0 0 1 1 1 1 ADP-ribosylation factor family Ras PF00071.22 gi|89257072|ref|YP_514434.1| - 1.4e-07 31.3 0.0 1.4e-07 31.3 0.0 3.0 2 1 1 3 3 3 1 Ras family GTP_EFTU_D2 PF03144.25 gi|89257072|ref|YP_514434.1| - 3.2e-07 30.7 3.8 0.00055 20.3 0.5 3.8 2 1 0 3 3 3 2 Elongation factor Tu domain 2 FeoB_N PF02421.18 gi|89257072|ref|YP_514434.1| - 0.00048 19.7 1.1 0.003 17.1 0.2 2.8 2 1 0 2 2 2 1 Ferrous iron transport protein B Roc PF08477.13 gi|89257072|ref|YP_514434.1| - 0.00079 19.6 0.0 0.0027 17.9 0.0 2.0 1 0 0 1 1 1 1 Ras of Complex, Roc, domain of DAPkinase PCI PF01399.27 gi|89257072|ref|YP_514434.1| - 0.019 15.4 2.0 0.07 13.6 0.2 2.5 2 0 0 2 2 2 0 PCI domain NusA_N PF08529.11 gi|89257073|ref|YP_514435.1| - 7.7e-27 94.1 7.3 7.7e-27 94.1 7.3 2.9 2 1 0 2 2 2 1 NusA N-terminal domain KH_5 PF13184.6 gi|89257073|ref|YP_514435.1| - 1.3e-26 92.5 2.6 8.8e-24 83.4 0.1 3.1 2 0 0 2 2 2 2 NusA-like KH domain HHH_5 PF14520.6 gi|89257073|ref|YP_514435.1| - 1.3e-14 54.5 3.3 1.5e-06 28.7 0.1 3.1 3 0 0 3 3 3 2 Helix-hairpin-helix domain S1 PF00575.23 gi|89257073|ref|YP_514435.1| - 1.2e-07 31.9 1.3 3.8e-07 30.4 0.3 2.4 2 0 0 2 2 2 1 S1 RNA binding domain RNA_pol_A_CTD PF03118.15 gi|89257073|ref|YP_514435.1| - 1.3e-05 24.9 6.7 0.00098 18.8 0.6 3.6 3 0 0 3 3 3 2 Bacterial RNA polymerase, alpha chain C terminal domain KH_2 PF07650.17 gi|89257073|ref|YP_514435.1| - 0.00064 19.5 0.4 0.008 16.0 0.1 2.8 2 0 0 2 2 2 1 KH domain DUF4332 PF14229.6 gi|89257073|ref|YP_514435.1| - 0.02 15.1 0.3 9.6 6.5 0.0 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4332) HhH-GPD PF00730.25 gi|89257073|ref|YP_514435.1| - 0.093 13.2 0.1 5.8 7.4 0.0 2.6 1 1 1 2 2 2 0 HhH-GPD superfamily base excision DNA repair protein SAM_2 PF07647.17 gi|89257073|ref|YP_514435.1| - 0.15 12.2 1.3 3 8.0 0.2 2.7 2 0 0 2 2 2 0 SAM domain (Sterile alpha motif) HHH_2 PF12826.7 gi|89257073|ref|YP_514435.1| - 0.17 12.0 3.2 0.82 9.8 0.2 2.7 2 0 0 2 2 2 0 Helix-hairpin-helix motif DUF150 PF02576.17 gi|89257074|ref|YP_514436.1| - 8.6e-27 93.4 0.1 1.6e-26 92.5 0.1 1.4 1 0 0 1 1 1 1 RimP N-terminal domain DUF150_C PF17384.2 gi|89257074|ref|YP_514436.1| - 3.7e-07 30.2 0.1 5.9e-07 29.5 0.1 1.3 1 0 0 1 1 1 1 RimP C-terminal SH3 domain DUF3244 PF11589.8 gi|89257074|ref|YP_514436.1| - 0.0097 16.0 0.0 0.017 15.2 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF3244) URO-D PF01208.17 gi|89257075|ref|YP_514437.1| - 1.2e-123 412.7 0.0 1.3e-123 412.6 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) XPC-binding PF09280.11 gi|89257075|ref|YP_514437.1| - 9.7e-06 25.2 0.3 4.1e-05 23.2 0.1 2.0 2 0 0 2 2 2 1 XPC-binding domain DDE_3 PF13358.6 gi|89257076|ref|YP_514438.1| - 9.9e-30 103.2 0.2 3.2e-29 101.6 0.0 1.8 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.16 gi|89257076|ref|YP_514438.1| - 0.0029 17.6 1.5 0.0084 16.2 0.6 2.3 2 1 0 2 2 2 1 Transposase HTH_29 PF13551.6 gi|89257076|ref|YP_514438.1| - 0.0033 17.4 0.0 0.008 16.2 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn helix HTH_40 PF14493.6 gi|89257076|ref|YP_514438.1| - 0.011 16.2 0.1 0.069 13.6 0.0 2.3 3 1 0 3 3 3 0 Helix-turn-helix domain HTH_28 PF13518.6 gi|89257076|ref|YP_514438.1| - 0.026 14.6 0.0 0.073 13.2 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain CENP-B_N PF04218.13 gi|89257076|ref|YP_514438.1| - 0.097 12.3 0.0 0.98 9.1 0.0 2.5 3 0 0 3 3 3 0 CENP-B N-terminal DNA-binding domain HTH_23 PF13384.6 gi|89257076|ref|YP_514438.1| - 0.12 12.2 0.0 0.34 10.8 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain rve PF00665.26 gi|89257076|ref|YP_514438.1| - 0.15 12.3 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 Integrase core domain DDE_Tnp_ISAZ013 PF07592.11 gi|89257076|ref|YP_514438.1| - 0.17 10.9 0.3 1.1 8.1 0.1 2.0 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain Proton_antipo_M PF00361.20 gi|89257077|ref|YP_514439.1| - 1.4e-68 231.3 29.3 1.4e-68 231.3 29.3 2.3 2 0 0 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_M PF00361.20 gi|89257078|ref|YP_514440.1| - 1.5e-67 227.9 34.4 2.7e-66 223.8 31.8 3.2 2 1 0 2 2 2 2 Proton-conducting membrane transporter Proton_antipo_M PF00361.20 gi|89257079|ref|YP_514441.1| - 8.6e-80 268.1 24.7 8.6e-80 268.1 24.7 2.5 3 0 0 3 3 3 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|89257079|ref|YP_514441.1| - 1.5e-22 79.4 5.7 1.5e-22 79.4 5.7 3.8 3 0 0 3 3 3 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Proton_antipo_C PF01010.19 gi|89257079|ref|YP_514441.1| - 7.4 6.1 13.9 1.5 8.4 7.5 2.9 2 1 0 2 2 2 0 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus Oxidored_q2 PF00420.24 gi|89257080|ref|YP_514442.1| - 3.6e-20 71.6 12.2 4e-20 71.4 12.2 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Herpes_LMP1 PF05297.11 gi|89257080|ref|YP_514442.1| - 0.095 11.9 8.1 0.1 11.8 8.1 1.1 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) Oxidored_q3 PF00499.20 gi|89257081|ref|YP_514443.1| - 1.1e-21 77.1 30.6 1.4e-21 76.7 30.6 1.2 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 PepSY_TM PF03929.16 gi|89257081|ref|YP_514443.1| - 5.8 6.5 6.8 1.6 8.3 0.3 2.8 2 1 0 3 3 3 0 PepSY-associated TM region Fer4 PF00037.27 gi|89257082|ref|YP_514444.1| - 1.2e-12 47.1 13.5 9.6e-07 28.4 1.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|89257082|ref|YP_514444.1| - 7.3e-12 45.7 7.6 1.1e-11 45.1 7.6 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|89257082|ref|YP_514444.1| - 1.2e-10 41.4 16.9 4.7e-08 33.0 9.0 1.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|89257082|ref|YP_514444.1| - 2.4e-10 40.7 24.2 6.8e-06 26.4 9.5 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|89257082|ref|YP_514444.1| - 2.5e-09 37.2 7.0 4e-09 36.5 7.0 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|89257082|ref|YP_514444.1| - 2.2e-08 34.9 5.1 0.0022 18.9 0.2 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|89257082|ref|YP_514444.1| - 2.4e-06 28.0 8.4 0.0013 19.2 10.6 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|89257082|ref|YP_514444.1| - 4.9e-06 26.6 23.3 0.00027 21.0 12.5 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|89257082|ref|YP_514444.1| - 5.1e-06 26.3 9.8 0.00053 19.9 2.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|89257082|ref|YP_514444.1| - 2.1e-05 24.7 9.1 0.0023 18.3 1.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|89257082|ref|YP_514444.1| - 2.8e-05 24.0 13.6 0.0024 17.9 4.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|89257082|ref|YP_514444.1| - 0.0022 18.8 15.2 0.022 15.7 2.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain c-SKI_SMAD_bind PF08782.10 gi|89257082|ref|YP_514444.1| - 0.0057 16.8 5.0 0.12 12.6 0.2 2.2 1 1 1 2 2 2 2 c-SKI Smad4 binding domain Fer4_18 PF13746.6 gi|89257082|ref|YP_514444.1| - 0.012 15.8 8.6 0.17 12.0 1.4 2.7 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|89257082|ref|YP_514444.1| - 0.16 12.8 11.3 2.2 9.2 2.7 2.3 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|89257082|ref|YP_514444.1| - 0.22 12.1 12.5 0.4 11.3 2.1 2.8 2 1 1 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I ETF_QO PF05187.13 gi|89257082|ref|YP_514444.1| - 1 9.6 4.5 1.1 9.5 0.4 2.1 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S NADHdh PF00146.21 gi|89257083|ref|YP_514445.1| - 9.9e-127 422.3 27.0 1.1e-126 422.1 27.0 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Bac_transf PF02397.16 gi|89257083|ref|YP_514445.1| - 0.064 12.9 0.5 0.16 11.6 0.1 1.8 2 0 0 2 2 2 0 Bacterial sugar transferase Molybdopterin PF00384.22 gi|89257084|ref|YP_514446.1| - 8e-37 127.2 0.3 5e-36 124.6 0.3 2.1 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Fer2_4 PF13510.6 gi|89257084|ref|YP_514446.1| - 8.4e-20 70.6 0.0 1.6e-19 69.7 0.0 1.5 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain NADH-G_4Fe-4S_3 PF10588.9 gi|89257084|ref|YP_514446.1| - 2.6e-17 62.1 0.1 2.6e-17 62.1 0.1 2.0 2 0 0 2 2 2 1 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Fer2 PF00111.27 gi|89257084|ref|YP_514446.1| - 5.5e-07 29.5 0.8 1.1e-06 28.5 0.1 1.9 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4 PF00037.27 gi|89257084|ref|YP_514446.1| - 0.088 12.7 1.1 2.5 8.1 0.3 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Complex1_51K PF01512.17 gi|89257085|ref|YP_514447.1| - 1.3e-44 151.7 0.0 1.9e-44 151.2 0.0 1.2 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit NADH_4Fe-4S PF10589.9 gi|89257085|ref|YP_514447.1| - 3.3e-31 107.2 0.0 7.2e-31 106.1 0.0 1.5 1 0 0 1 1 1 1 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region SLBB PF10531.9 gi|89257085|ref|YP_514447.1| - 1.1e-09 38.0 0.0 2.5e-09 36.9 0.0 1.6 1 0 0 1 1 1 1 SLBB domain 2Fe-2S_thioredx PF01257.19 gi|89257086|ref|YP_514448.1| - 5.9e-50 168.9 0.3 6.6e-50 168.7 0.3 1.0 1 0 0 1 1 1 1 Thioredoxin-like [2Fe-2S] ferredoxin EutH PF04346.12 gi|89257086|ref|YP_514448.1| - 0.21 10.8 0.0 0.24 10.5 0.0 1.1 1 0 0 1 1 1 0 Ethanolamine utilisation protein, EutH Complex1_49kDa PF00346.19 gi|89257087|ref|YP_514449.1| - 3.5e-116 387.1 0.0 4.4e-116 386.7 0.0 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.19 gi|89257087|ref|YP_514449.1| - 0.0015 17.6 0.0 0.0083 15.1 0.0 1.9 1 1 1 2 2 2 1 Nickel-dependent hydrogenase Complex1_30kDa PF00329.19 gi|89257088|ref|YP_514450.1| - 1.3e-40 138.8 0.1 3.1e-40 137.6 0.1 1.5 1 1 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit DUF2087 PF09860.9 gi|89257088|ref|YP_514450.1| - 0.0031 17.6 0.0 0.0082 16.3 0.0 1.7 2 0 0 2 2 2 1 Uncharacterized protein conserved in bacteria (DUF2087) Oxidored_q6 PF01058.22 gi|89257089|ref|YP_514451.1| - 1.6e-23 83.0 0.2 2e-23 82.7 0.2 1.1 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Oxidored_q4 PF00507.19 gi|89257090|ref|YP_514452.1| - 6.6e-33 112.8 1.3 6.6e-33 112.8 1.3 1.6 1 1 1 2 2 2 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 MaAIMP_sms PF16951.5 gi|89257090|ref|YP_514452.1| - 4.7 7.0 8.6 0.75 9.6 0.8 2.8 2 1 0 2 2 2 0 Putative methionine and alanine importer, small subunit FUR PF01475.19 gi|89257091|ref|YP_514453.1| - 1.5e-38 131.7 0.1 1.7e-38 131.4 0.1 1.1 1 0 0 1 1 1 1 Ferric uptake regulator family SWIRM PF04433.17 gi|89257091|ref|YP_514453.1| - 0.012 16.0 0.0 0.027 14.8 0.0 1.6 1 0 0 1 1 1 0 SWIRM domain Arg_repressor PF01316.21 gi|89257091|ref|YP_514453.1| - 0.026 14.3 0.3 5.8 6.7 0.1 2.6 2 1 1 3 3 3 0 Arginine repressor, DNA binding domain PadR PF03551.14 gi|89257091|ref|YP_514453.1| - 0.073 13.0 0.0 0.14 12.1 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family TA0956 PF11513.8 gi|89257091|ref|YP_514453.1| - 0.075 13.3 0.2 0.14 12.4 0.2 1.4 1 0 0 1 1 1 0 Thermoplasma acidophilum protein TA0956 TrmB PF01978.19 gi|89257091|ref|YP_514453.1| - 0.15 11.9 0.0 0.33 10.9 0.0 1.6 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|89257091|ref|YP_514453.1| - 0.16 11.9 0.0 0.28 11.2 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain IucA_IucC PF04183.12 gi|89257092|ref|YP_514454.1| - 7.8e-60 202.4 0.0 2.7e-59 200.6 0.0 1.9 2 0 0 2 2 2 1 IucA / IucC family FhuF PF06276.12 gi|89257092|ref|YP_514454.1| - 1e-26 94.3 0.0 2.1e-26 93.3 0.0 1.6 1 0 0 1 1 1 1 Ferric iron reductase FhuF-like transporter MFS_1 PF07690.16 gi|89257093|ref|YP_514455.1| - 1.8e-42 145.6 44.4 5.1e-31 107.9 27.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily BT1 PF03092.16 gi|89257093|ref|YP_514455.1| - 0.0043 15.4 19.2 0.013 13.8 5.2 2.4 2 1 0 2 2 2 2 BT1 family PRA1 PF03208.19 gi|89257093|ref|YP_514455.1| - 9.2 5.9 33.6 0.061 12.9 9.8 3.7 1 1 3 4 4 4 0 PRA1 family protein Orn_Arg_deC_N PF02784.16 gi|89257094|ref|YP_514456.1| - 4.2e-32 111.5 0.0 5.6e-32 111.1 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.22 gi|89257094|ref|YP_514456.1| - 8.3e-09 35.6 0.0 8.8e-09 35.5 0.0 1.4 1 1 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain MFS_1 PF07690.16 gi|89257095|ref|YP_514457.1| - 3.1e-34 118.4 47.5 3.1e-34 118.4 47.5 2.0 1 1 1 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|89257095|ref|YP_514457.1| - 2e-10 40.2 13.5 2e-10 40.2 13.5 2.1 1 1 1 2 2 2 1 Sugar (and other) transporter MFS_2 PF13347.6 gi|89257095|ref|YP_514457.1| - 0.028 13.0 46.8 0.0094 14.5 8.6 2.7 1 1 1 2 2 2 0 MFS/sugar transport protein MFS_3 PF05977.13 gi|89257095|ref|YP_514457.1| - 0.051 12.0 17.6 0.079 11.3 17.6 1.3 1 0 0 1 1 1 0 Transmembrane secretion effector DUF3573 PF12097.8 gi|89257096|ref|YP_514458.1| - 7.1e-204 676.8 31.2 9.4e-204 676.4 31.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3573) DUF5001 PF16392.5 gi|89257097|ref|YP_514459.1| - 0.042 13.7 2.0 0.69 9.9 0.2 2.2 1 1 1 2 2 2 0 Ig-like domain Lipase_GDSL_2 PF13472.6 gi|89257098|ref|YP_514460.1| - 0.041 14.3 0.0 0.043 14.2 0.0 1.1 1 0 0 1 1 1 0 GDSL-like Lipase/Acylhydrolase family SAPI PF16560.5 gi|89257098|ref|YP_514460.1| - 0.13 11.9 0.0 0.13 11.8 0.0 1.0 1 0 0 1 1 1 0 Putative mobile pathogenicity island Lipase_GDSL PF00657.22 gi|89257099|ref|YP_514461.1| - 0.00052 20.0 0.1 0.00068 19.7 0.1 1.1 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase DUF4854 PF16146.5 gi|89257100|ref|YP_514462.1| - 0.048 14.0 0.1 0.072 13.4 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4854) GatB_N PF02934.15 gi|89257101|ref|YP_514463.1| - 1.3e-109 365.8 0.0 1.8e-109 365.4 0.0 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|89257101|ref|YP_514463.1| - 8.4e-40 136.1 2.9 1.5e-39 135.2 2.9 1.4 1 0 0 1 1 1 1 GatB domain Amidase PF01425.21 gi|89257102|ref|YP_514464.1| - 1.2e-144 482.7 0.1 1.4e-144 482.4 0.1 1.0 1 0 0 1 1 1 1 Amidase HBM PF16591.5 gi|89257102|ref|YP_514464.1| - 0.11 12.0 0.4 0.35 10.2 0.1 1.8 2 0 0 2 2 2 0 Helical bimodular sensor domain SHOCT PF09851.9 gi|89257102|ref|YP_514464.1| - 0.11 12.3 0.1 0.11 12.3 0.1 1.9 2 0 0 2 2 2 0 Short C-terminal domain Glu-tRNAGln PF02686.15 gi|89257103|ref|YP_514465.1| - 6.4e-12 45.6 0.2 9e-12 45.1 0.2 1.2 1 0 0 1 1 1 1 Glu-tRNAGln amidotransferase C subunit DUF777 PF05606.11 gi|89257103|ref|YP_514465.1| - 0.047 13.4 0.1 0.062 13.0 0.1 1.3 1 0 0 1 1 1 0 Borrelia burgdorferi protein of unknown function (DUF777) PBECR3 PF18812.1 gi|89257103|ref|YP_514465.1| - 0.083 12.9 0.0 0.11 12.5 0.0 1.2 1 0 0 1 1 1 0 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3 YcbB PF08664.10 gi|89257103|ref|YP_514465.1| - 0.15 12.1 0.0 0.2 11.7 0.0 1.2 1 0 0 1 1 1 0 YcbB domain HlyD_3 PF13437.6 gi|89257104|ref|YP_514466.1| - 1.1e-05 26.1 0.0 2.5e-05 24.9 0.0 1.6 1 1 0 1 1 1 1 HlyD family secretion protein Biotin_lipoyl_2 PF13533.6 gi|89257105|ref|YP_514467.1| - 6.2e-07 29.1 0.0 1.8e-06 27.7 0.0 1.7 1 0 0 1 1 1 1 Biotin-lipoyl like Biotin_lipoyl PF00364.22 gi|89257105|ref|YP_514467.1| - 0.0033 17.2 0.5 0.0062 16.3 0.0 1.7 2 0 0 2 2 2 1 Biotin-requiring enzyme HlyD_D23 PF16576.5 gi|89257105|ref|YP_514467.1| - 0.0094 15.2 0.1 0.014 14.6 0.1 1.5 1 1 0 1 1 1 1 Barrel-sandwich domain of CusB or HlyD membrane-fusion HlyD_3 PF13437.6 gi|89257105|ref|YP_514467.1| - 0.015 16.0 0.0 0.029 15.1 0.0 1.6 1 1 0 1 1 1 0 HlyD family secretion protein IFT57 PF10498.9 gi|89257105|ref|YP_514467.1| - 0.062 12.3 2.3 0.073 12.0 2.3 1.1 1 0 0 1 1 1 0 Intra-flagellar transport protein 57 PYNP_C PF07831.13 gi|89257105|ref|YP_514467.1| - 0.11 12.1 0.3 0.6 9.8 0.0 2.1 2 0 0 2 2 2 0 Pyrimidine nucleoside phosphorylase C-terminal domain DUF5426 PF17473.2 gi|89257107|ref|YP_514469.1| - 0.0024 18.1 4.5 0.0034 17.7 4.5 1.3 1 0 0 1 1 1 1 Family of unknown function (DUF5426) FUSC-like PF12805.7 gi|89257107|ref|YP_514469.1| - 0.37 9.8 0.1 0.37 9.8 0.1 2.0 2 0 0 2 2 2 0 FUSC-like inner membrane protein yccS Lyase_1 PF00206.20 gi|89257110|ref|YP_514472.1| - 1.2e-40 139.8 0.0 1.7e-40 139.4 0.0 1.2 1 0 0 1 1 1 1 Lyase DDE_Tnp_1_2 PF13586.6 gi|89257111|ref|YP_514473.1| - 1e-13 51.4 0.0 1.8e-13 50.6 0.0 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|89257111|ref|YP_514473.1| - 4.3e-12 46.2 2.0 3.9e-11 43.0 2.0 1.9 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 gi|89257111|ref|YP_514473.1| - 6.9e-08 32.6 0.0 9.8e-08 32.2 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.6 gi|89257111|ref|YP_514473.1| - 0.00018 21.2 0.2 0.00024 20.8 0.2 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease DUF4096 PF13340.6 gi|89257111|ref|YP_514473.1| - 0.0057 16.9 0.0 0.011 15.9 0.0 1.5 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) ComFB PF10719.9 gi|89257112|ref|YP_514474.1| - 0.072 13.2 0.8 0.34 11.0 0.1 2.1 2 0 0 2 2 2 0 Late competence development protein ComFB LPAM_1 PF08139.12 gi|89257113|ref|YP_514475.1| - 0.0086 16.5 0.4 0.017 15.6 0.4 1.5 1 0 0 1 1 1 1 Prokaryotic membrane lipoprotein lipid attachment site Aldose_epim PF01263.20 gi|89257114|ref|YP_514476.1| - 7.6e-19 68.1 0.0 8.9e-19 67.9 0.0 1.1 1 0 0 1 1 1 1 Aldose 1-epimerase GATase_5 PF13507.6 gi|89257115|ref|YP_514477.1| - 2.1e-100 335.1 0.1 3.2e-100 334.5 0.1 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain AIRS_C PF02769.22 gi|89257115|ref|YP_514477.1| - 3e-36 124.9 0.4 3.9e-27 95.3 0.0 2.6 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain FGAR-AT_N PF18076.1 gi|89257115|ref|YP_514477.1| - 5.8e-31 106.9 0.0 1.2e-30 105.9 0.0 1.5 1 0 0 1 1 1 1 Formylglycinamide ribonucleotide amidotransferase N-terminal FGAR-AT_linker PF18072.1 gi|89257115|ref|YP_514477.1| - 2.5e-23 82.3 0.1 7.3e-23 80.9 0.1 1.9 1 0 0 1 1 1 1 Formylglycinamide ribonucleotide amidotransferase linker domain AIRS PF00586.24 gi|89257115|ref|YP_514477.1| - 0.00058 20.5 0.9 0.015 15.9 0.0 3.0 3 0 0 3 3 3 1 AIR synthase related protein, N-terminal domain DUF5537 PF17690.1 gi|89257115|ref|YP_514477.1| - 0.12 12.0 0.0 0.26 11.0 0.0 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5537) GATase_6 PF13522.6 gi|89257116|ref|YP_514478.1| - 1.9e-14 54.0 0.0 3.3e-14 53.2 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|89257116|ref|YP_514478.1| - 2.1e-13 50.3 0.0 6.3e-13 48.7 0.0 1.7 2 0 0 2 2 2 1 Glutamine amidotransferase domain Pribosyltran PF00156.27 gi|89257116|ref|YP_514478.1| - 1.6e-09 37.4 0.1 6.5e-09 35.5 0.1 1.9 2 0 0 2 2 2 1 Phosphoribosyl transferase domain GATase_4 PF13230.6 gi|89257116|ref|YP_514478.1| - 0.0011 17.9 0.0 0.0019 17.1 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II UPRTase PF14681.6 gi|89257116|ref|YP_514478.1| - 0.12 11.8 0.0 0.24 10.8 0.0 1.4 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase Pyridoxal_deC PF00282.19 gi|89257118|ref|YP_514480.1| - 2.1e-73 247.2 0.0 1.6e-72 244.3 0.0 1.9 1 1 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain ACPS PF01648.20 gi|89257119|ref|YP_514481.1| - 3e-12 46.7 0.0 5.7e-12 45.8 0.0 1.5 1 0 0 1 1 1 1 4'-phosphopantetheinyl transferase superfamily OEP PF02321.18 gi|89257120|ref|YP_514482.1| - 5.1e-37 127.5 30.1 3.4e-19 69.4 8.1 2.1 2 0 0 2 2 2 2 Outer membrane efflux protein PCMT PF01135.19 gi|89257121|ref|YP_514483.1| - 6.7e-17 61.9 0.0 8.3e-17 61.6 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 gi|89257121|ref|YP_514483.1| - 0.099 12.4 0.0 0.13 12.1 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain MTS PF05175.14 gi|89257121|ref|YP_514483.1| - 0.12 12.0 0.1 0.37 10.3 0.1 1.8 1 1 0 1 1 1 0 Methyltransferase small domain Peptidase_U32 PF01136.19 gi|89257122|ref|YP_514484.1| - 2.3e-97 324.7 0.1 1.1e-96 322.5 0.0 1.9 2 0 0 2 2 2 1 Peptidase family U32 Peptidase_U32_C PF16325.5 gi|89257122|ref|YP_514484.1| - 1.7e-16 60.2 0.1 5.6e-16 58.6 0.1 1.9 1 0 0 1 1 1 1 Peptidase family U32 C-terminal domain Tachystatin_B PF11478.8 gi|89257122|ref|YP_514484.1| - 0.024 14.6 2.0 0.053 13.5 2.0 1.6 1 0 0 1 1 1 0 Antimicrobial chitin binding protein tachystatin B MFS_1 PF07690.16 gi|89257123|ref|YP_514485.1| - 6.5e-42 143.7 54.5 6.5e-42 143.7 54.5 1.8 1 1 1 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|89257123|ref|YP_514485.1| - 1.5e-13 50.4 14.3 1.5e-13 50.4 14.3 3.3 1 1 1 2 2 2 1 Sugar (and other) transporter CitMHS PF03600.16 gi|89257124|ref|YP_514486.1| - 8e-48 163.2 29.2 8e-48 163.2 29.2 2.1 2 1 0 2 2 2 1 Citrate transporter Smim3 PF17307.2 gi|89257124|ref|YP_514486.1| - 0.12 11.9 6.5 0.25 10.9 0.1 4.2 4 0 0 4 4 4 0 Small integral membrane protein 3 AA_permease_2 PF13520.6 gi|89257125|ref|YP_514487.1| - 2e-33 115.8 54.3 2.7e-33 115.4 54.3 1.2 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|89257125|ref|YP_514487.1| - 2.4e-09 36.4 47.5 4.6e-09 35.4 47.4 1.4 1 1 0 1 1 1 1 Amino acid permease K_trans PF02705.16 gi|89257125|ref|YP_514487.1| - 0.015 13.9 30.3 0.046 12.2 4.2 2.6 3 0 0 3 3 3 0 K+ potassium transporter GTP1_OBG PF01018.22 gi|89257126|ref|YP_514488.1| - 2.5e-58 196.1 3.6 3.4e-58 195.7 3.6 1.2 1 0 0 1 1 1 1 GTP1/OBG MMR_HSR1 PF01926.23 gi|89257126|ref|YP_514488.1| - 1.4e-22 80.0 0.0 2.2e-22 79.3 0.0 1.3 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|89257126|ref|YP_514488.1| - 1.5e-08 34.3 0.0 3.8e-08 33.0 0.0 1.8 1 1 0 1 1 1 1 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|89257126|ref|YP_514488.1| - 0.00013 21.9 0.2 0.0085 16.0 0.1 2.3 2 0 0 2 2 2 1 RsgA GTPase PduV-EutP PF10662.9 gi|89257126|ref|YP_514488.1| - 0.0095 15.7 0.0 0.087 12.6 0.0 2.1 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation cobW PF02492.19 gi|89257126|ref|YP_514488.1| - 0.0099 15.5 0.0 0.15 11.6 0.0 2.1 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain ATP_bind_1 PF03029.17 gi|89257126|ref|YP_514488.1| - 0.017 14.9 0.0 4.3 7.0 0.0 2.2 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein MMR_HSR1_Xtn PF16897.5 gi|89257126|ref|YP_514488.1| - 0.017 15.1 0.1 0.035 14.1 0.1 1.5 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain MeaB PF03308.16 gi|89257126|ref|YP_514488.1| - 0.02 13.9 0.0 2.2 7.2 0.0 2.2 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB GTP_EFTU PF00009.27 gi|89257126|ref|YP_514488.1| - 0.036 13.6 0.1 1.1 8.8 0.1 2.2 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain ABC_tran PF00005.27 gi|89257126|ref|YP_514488.1| - 0.05 14.1 0.0 0.12 12.9 0.0 1.6 1 0 0 1 1 1 0 ABC transporter Arf PF00025.21 gi|89257126|ref|YP_514488.1| - 0.057 12.9 0.0 1.6 8.1 0.0 2.1 2 0 0 2 2 2 0 ADP-ribosylation factor family Trp_Tyr_perm PF03222.13 gi|89257127|ref|YP_514489.1| - 3.3e-80 270.0 38.4 4e-80 269.8 38.4 1.0 1 0 0 1 1 1 1 Tryptophan/tyrosine permease family Aa_trans PF01490.18 gi|89257127|ref|YP_514489.1| - 0.00025 19.9 27.4 0.00025 19.9 27.4 2.3 2 0 0 2 2 2 2 Transmembrane amino acid transporter protein OMP_b-brl PF13505.6 gi|89257128|ref|YP_514490.1| - 0.0063 16.7 6.5 0.14 12.3 6.5 2.3 1 1 0 1 1 1 1 Outer membrane protein beta-barrel domain HATPase_c PF02518.26 gi|89257129|ref|YP_514491.1| - 2.4e-21 76.4 0.1 4.2e-21 75.5 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|89257129|ref|YP_514491.1| - 5.2e-12 45.6 0.0 1.6e-11 44.0 0.0 1.9 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain DUF4118 PF13493.6 gi|89257129|ref|YP_514491.1| - 1.9e-11 43.7 13.0 3.6e-11 42.8 13.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4118) HATPase_c_5 PF14501.6 gi|89257129|ref|YP_514491.1| - 1.5e-05 24.8 1.0 5.9e-05 22.9 0.0 2.2 2 0 0 2 2 2 1 GHKL domain HATPase_c_3 PF13589.6 gi|89257129|ref|YP_514491.1| - 0.16 11.8 0.0 0.3 10.9 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KdpD PF02702.17 gi|89257130|ref|YP_514492.1| - 1.4e-83 279.5 0.5 1.9e-83 279.0 0.5 1.2 1 0 0 1 1 1 1 Osmosensitive K+ channel His kinase sensor domain ResIII PF04851.15 gi|89257130|ref|YP_514492.1| - 0.003 17.6 0.1 0.06 13.3 0.0 2.2 1 1 1 2 2 2 1 Type III restriction enzyme, res subunit AAA_30 PF13604.6 gi|89257130|ref|YP_514492.1| - 0.0043 16.8 0.0 0.0078 16.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|89257130|ref|YP_514492.1| - 0.015 15.8 0.0 0.098 13.2 0.0 2.3 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|89257130|ref|YP_514492.1| - 0.092 12.6 0.6 12 5.7 0.4 2.5 1 1 1 2 2 2 0 NTPase AAA_17 PF13207.6 gi|89257130|ref|YP_514492.1| - 0.16 12.4 0.3 1.4 9.4 0.1 2.3 1 1 1 2 2 2 0 AAA domain Peptidase_C10 PF01640.17 gi|89257130|ref|YP_514492.1| - 0.18 12.1 0.0 0.47 10.7 0.0 1.6 2 0 0 2 2 2 0 Peptidase C10 family KdpC PF02669.15 gi|89257131|ref|YP_514493.1| - 4.2e-50 170.1 1.2 4.7e-50 170.0 1.2 1.0 1 0 0 1 1 1 1 K+-transporting ATPase, c chain 4HB_MCP_1 PF12729.7 gi|89257131|ref|YP_514493.1| - 0.012 15.2 0.0 0.022 14.3 0.0 1.4 1 0 0 1 1 1 0 Four helix bundle sensory module for signal transduction TagA PF12561.8 gi|89257131|ref|YP_514493.1| - 0.025 14.9 0.2 7.9 7.0 0.0 2.3 2 1 0 2 2 2 0 ToxR activated gene A lipoprotein domain Hydrolase PF00702.26 gi|89257132|ref|YP_514494.1| - 2.3e-24 86.9 0.8 3.3e-24 86.3 0.8 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|89257132|ref|YP_514494.1| - 8.8e-06 25.6 1.1 0.0013 18.5 0.4 2.2 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|89257132|ref|YP_514494.1| - 0.00092 19.7 0.0 0.003 18.0 0.0 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase E1-E2_ATPase PF00122.20 gi|89257133|ref|YP_514495.1| - 2.3e-23 82.7 11.5 1.3e-16 60.7 2.3 2.4 1 1 1 2 2 2 2 E1-E2 ATPase Hydrolase PF00702.26 gi|89257133|ref|YP_514495.1| - 4.9e-05 23.7 0.0 0.0001 22.7 0.0 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase DUF2207 PF09972.9 gi|89257133|ref|YP_514495.1| - 0.0051 15.6 0.1 0.0074 15.1 0.1 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2207) EBP PF05241.12 gi|89257133|ref|YP_514495.1| - 0.037 13.5 3.3 0.22 11.0 0.1 2.5 2 1 0 2 2 2 0 Emopamil binding protein Phage_holin_3_6 PF07332.11 gi|89257133|ref|YP_514495.1| - 0.27 11.3 8.8 1.3 9.1 4.4 2.3 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III MgtE PF01769.16 gi|89257133|ref|YP_514495.1| - 0.83 10.1 9.4 1.3 9.4 3.1 2.2 2 0 0 2 2 2 0 Divalent cation transporter Yip1 PF04893.17 gi|89257133|ref|YP_514495.1| - 1.4 8.6 14.1 0.085 12.6 4.5 2.1 2 0 0 2 2 2 0 Yip1 domain KdpA PF03814.15 gi|89257134|ref|YP_514496.1| - 6.8e-212 704.5 37.4 8e-212 704.3 37.4 1.0 1 0 0 1 1 1 1 Potassium-transporting ATPase A subunit DUF3007 PF11460.8 gi|89257134|ref|YP_514496.1| - 0.12 12.6 1.0 2.4 8.4 0.0 3.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3007) Mtc PF03820.17 gi|89257134|ref|YP_514496.1| - 0.43 9.6 4.3 2 7.4 2.5 2.4 2 0 0 2 2 2 0 Tricarboxylate carrier 2-Hacid_dh_C PF02826.19 gi|89257136|ref|YP_514498.1| - 4.5e-18 65.2 0.0 8.7e-18 64.3 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DDE_Tnp_1_2 PF13586.6 gi|89257136|ref|YP_514498.1| - 1.2e-13 51.2 0.1 3e-13 50.0 0.0 1.7 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|89257136|ref|YP_514498.1| - 8.5e-12 45.2 1.9 7e-11 42.2 1.9 2.0 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 gi|89257136|ref|YP_514498.1| - 8.8e-08 32.3 0.0 1.7e-07 31.4 0.0 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.6 gi|89257136|ref|YP_514498.1| - 0.0003 20.5 0.2 0.00044 19.9 0.2 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease DUF4096 PF13340.6 gi|89257136|ref|YP_514498.1| - 0.0073 16.5 0.0 0.016 15.4 0.0 1.6 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) DDE_3 PF13358.6 gi|89257137|ref|YP_514499.1| - 2e-29 102.2 0.1 7.3e-29 100.4 0.0 1.8 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_29 PF13551.6 gi|89257137|ref|YP_514499.1| - 0.003 17.6 0.0 0.0074 16.3 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn helix HTH_Tnp_IS630 PF01710.16 gi|89257137|ref|YP_514499.1| - 0.0032 17.5 1.8 0.0083 16.2 0.8 2.2 2 1 0 2 2 2 1 Transposase HTH_40 PF14493.6 gi|89257137|ref|YP_514499.1| - 0.014 15.8 0.0 0.061 13.8 0.0 2.0 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_28 PF13518.6 gi|89257137|ref|YP_514499.1| - 0.023 14.8 0.0 0.067 13.3 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|89257137|ref|YP_514499.1| - 0.11 12.4 0.0 0.31 10.9 0.0 1.9 1 0 0 1 1 1 0 Homeodomain-like domain rve PF00665.26 gi|89257137|ref|YP_514499.1| - 0.14 12.4 0.0 0.25 11.6 0.0 1.4 1 0 0 1 1 1 0 Integrase core domain Iso_dh PF00180.20 gi|89257138|ref|YP_514500.1| - 9.4e-54 182.9 0.1 1e-53 182.7 0.1 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Aconitase_C PF00694.19 gi|89257139|ref|YP_514501.1| - 7.5e-25 87.8 0.0 1.2e-24 87.1 0.0 1.4 1 0 0 1 1 1 1 Aconitase C-terminal domain Aconitase_2_N PF06434.13 gi|89257139|ref|YP_514501.1| - 0.0083 15.8 0.0 0.094 12.3 0.0 2.0 1 1 0 1 1 1 1 Aconitate hydratase 2 N-terminus TrbH PF07283.11 gi|89257139|ref|YP_514501.1| - 0.066 13.4 0.0 0.13 12.5 0.0 1.4 1 0 0 1 1 1 0 Conjugal transfer protein TrbH Aconitase PF00330.20 gi|89257140|ref|YP_514502.1| - 3.2e-140 468.2 0.1 3.7e-140 468.0 0.1 1.0 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) DUF521 PF04412.13 gi|89257140|ref|YP_514502.1| - 0.047 12.4 0.0 0.068 11.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF521) DDE_3 PF13358.6 gi|89257141|ref|YP_514503.1| - 2.3e-30 105.3 0.1 7.9e-30 103.5 0.0 1.8 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.16 gi|89257141|ref|YP_514503.1| - 0.0029 17.6 1.5 0.0084 16.2 0.6 2.3 2 1 0 2 2 2 1 Transposase HTH_29 PF13551.6 gi|89257141|ref|YP_514503.1| - 0.0033 17.4 0.0 0.008 16.2 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn helix HTH_40 PF14493.6 gi|89257141|ref|YP_514503.1| - 0.0099 16.3 0.1 0.069 13.6 0.0 2.3 3 1 0 3 3 3 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|89257141|ref|YP_514503.1| - 0.026 14.6 0.0 0.073 13.2 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|89257141|ref|YP_514503.1| - 0.12 12.2 0.0 0.34 10.8 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain rve PF00665.26 gi|89257141|ref|YP_514503.1| - 0.15 12.3 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 Integrase core domain DDE_Tnp_ISAZ013 PF07592.11 gi|89257141|ref|YP_514503.1| - 0.17 10.9 0.3 1.1 8.1 0.1 2.1 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain Gly_transf_sug PF04488.15 gi|89257142|ref|YP_514504.1| - 2.1e-09 37.9 4.4 5.6e-09 36.5 0.4 3.0 2 1 0 3 3 3 1 Glycosyltransferase sugar-binding region containing DXD motif TcdA_TcdB PF12919.7 gi|89257142|ref|YP_514504.1| - 1.4e-06 27.8 7.4 3.1e-06 26.8 0.2 2.5 1 1 0 2 2 2 2 TcdA/TcdB catalytic glycosyltransferase domain DUF2508 PF10704.9 gi|89257142|ref|YP_514504.1| - 0.012 15.8 0.4 0.026 14.7 0.4 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2508) DDE_Tnp_1_2 PF13586.6 gi|89257143|ref|YP_514505.1| - 7.9e-14 51.8 0.0 1.2e-13 51.2 0.0 1.3 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|89257143|ref|YP_514505.1| - 2.4e-12 46.9 2.2 2.4e-11 43.7 2.2 1.9 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 gi|89257143|ref|YP_514505.1| - 4.9e-08 33.1 0.0 6.2e-08 32.8 0.0 1.1 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.6 gi|89257143|ref|YP_514505.1| - 0.00012 21.8 0.1 0.00016 21.4 0.1 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease Lipocalin_2 PF08212.12 gi|89257145|ref|YP_514507.1| - 2.1e-40 138.0 0.3 2.4e-40 137.8 0.3 1.0 1 0 0 1 1 1 1 Lipocalin-like domain Lipocalin PF00061.23 gi|89257145|ref|YP_514507.1| - 1.1e-11 45.1 0.1 1.4e-11 44.8 0.1 1.1 1 0 0 1 1 1 1 Lipocalin / cytosolic fatty-acid binding protein family DUF3139 PF11337.8 gi|89257145|ref|YP_514507.1| - 0.42 11.3 4.4 14 6.4 4.4 2.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3139) LPAM_1 PF08139.12 gi|89257145|ref|YP_514507.1| - 1.3 9.6 3.2 2.9 8.5 3.2 1.6 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site DNA_pol3_delta PF06144.13 gi|89257146|ref|YP_514508.1| - 2.3e-22 79.6 10.4 4.2e-22 78.8 10.4 1.4 1 0 0 1 1 1 1 DNA polymerase III, delta subunit DNA_pol3_delt_C PF14840.6 gi|89257146|ref|YP_514508.1| - 2.5e-05 24.6 0.2 7.3e-05 23.1 0.2 1.8 1 0 0 1 1 1 1 Processivity clamp loader gamma complex DNA pol III C-term Gln-synt_N PF03951.19 gi|89257147|ref|YP_514509.1| - 4.8e-19 67.9 0.0 8.1e-19 67.1 0.0 1.4 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain Gln-synt_C PF00120.24 gi|89257147|ref|YP_514509.1| - 1e-13 51.1 0.0 2.2e-13 50.0 0.0 1.5 1 1 0 1 1 1 1 Glutamine synthetase, catalytic domain Glutaminase PF04960.15 gi|89257148|ref|YP_514510.1| - 3.3e-110 367.8 0.0 4.5e-110 367.3 0.0 1.2 1 0 0 1 1 1 1 Glutaminase Ank_4 PF13637.6 gi|89257148|ref|YP_514510.1| - 9.4e-19 67.5 0.5 1.8e-10 41.1 0.1 3.1 2 1 1 3 3 3 2 Ankyrin repeats (many copies) Ank_2 PF12796.7 gi|89257148|ref|YP_514510.1| - 1.5e-12 47.9 0.0 6.8e-12 45.8 0.0 2.2 2 1 0 2 2 2 1 Ankyrin repeats (3 copies) EF-hand_14 PF17959.1 gi|89257148|ref|YP_514510.1| - 1.3e-10 41.5 0.4 3.6e-10 40.0 0.4 1.7 1 0 0 1 1 1 1 EF-hand domain Ank_3 PF13606.6 gi|89257148|ref|YP_514510.1| - 6.6e-10 38.4 0.3 9.8e-07 28.6 0.0 4.2 4 0 0 4 4 4 1 Ankyrin repeat Ank PF00023.30 gi|89257148|ref|YP_514510.1| - 3.5e-09 36.7 0.2 6.8e-08 32.6 0.0 2.8 3 0 0 3 3 3 1 Ankyrin repeat Ank_5 PF13857.6 gi|89257148|ref|YP_514510.1| - 9.7e-09 35.3 0.0 3e-07 30.6 0.0 2.8 2 1 1 3 3 3 1 Ankyrin repeats (many copies) EF-hand_7 PF13499.6 gi|89257148|ref|YP_514510.1| - 0.02 15.3 0.6 0.051 14.0 0.6 1.7 1 0 0 1 1 1 0 EF-hand domain pair CPBP PF02517.16 gi|89257149|ref|YP_514511.1| - 5.7e-11 42.6 7.8 5.7e-11 42.6 7.8 3.2 2 1 1 3 3 3 1 CPBP intramembrane metalloprotease UPF0114 PF03350.16 gi|89257150|ref|YP_514512.1| - 3.5e-28 98.2 3.8 3.5e-28 98.2 3.8 1.9 2 0 0 2 2 2 1 Uncharacterized protein family, UPF0114 tRNA-synt_2 PF00152.20 gi|89257151|ref|YP_514513.1| - 9e-85 284.5 2.6 9e-85 284.5 2.6 1.6 2 0 0 2 2 2 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|89257151|ref|YP_514513.1| - 2.8e-17 62.5 0.1 9.3e-17 60.8 0.0 1.9 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|89257151|ref|YP_514513.1| - 0.001 18.6 0.2 0.59 9.6 0.0 2.8 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) UvsW PF11637.8 gi|89257151|ref|YP_514513.1| - 0.031 14.4 3.8 0.06 13.4 0.1 3.1 3 0 0 3 3 3 0 ATP-dependant DNA helicase UvsW DUF507 PF04368.13 gi|89257151|ref|YP_514513.1| - 0.36 10.8 10.8 0.84 9.5 2.8 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF507) EF-G-binding_N PF07299.11 gi|89257151|ref|YP_514513.1| - 1.1 9.8 5.6 0.56 10.8 2.2 2.4 2 0 0 2 2 2 0 Elongation factor G-binding protein, N-terminal PCRF PF03462.18 gi|89257152|ref|YP_514514.1| - 6.4e-54 182.8 2.6 8.4e-54 182.4 0.3 1.9 2 0 0 2 2 2 1 PCRF domain RF-1 PF00472.20 gi|89257152|ref|YP_514514.1| - 1.2e-41 141.3 1.7 1.2e-41 141.3 1.7 1.6 2 0 0 2 2 2 1 RF-1 domain MIR PF02815.19 gi|89257152|ref|YP_514514.1| - 0.002 18.0 0.1 0.0034 17.3 0.1 1.4 1 0 0 1 1 1 1 MIR domain MCU PF04678.13 gi|89257152|ref|YP_514514.1| - 0.032 14.3 1.1 1.5 8.9 0.0 2.2 2 0 0 2 2 2 0 Mitochondrial calcium uniporter DNA_pol3_delta2 PF13177.6 gi|89257153|ref|YP_514515.1| - 4.7e-42 143.5 1.5 7.6e-42 142.9 0.3 2.0 2 0 0 2 2 2 1 DNA polymerase III, delta subunit DNA_pol3_gamma3 PF12169.8 gi|89257153|ref|YP_514515.1| - 2.8e-18 66.2 0.1 7.1e-18 64.9 0.1 1.7 1 0 0 1 1 1 1 DNA polymerase III subunits gamma and tau domain III AAA PF00004.29 gi|89257153|ref|YP_514515.1| - 1.1e-10 42.0 0.0 4.7e-10 40.0 0.0 2.1 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|89257153|ref|YP_514515.1| - 1.2e-07 31.6 0.4 2.2e-05 24.2 0.0 3.1 2 1 1 3 3 3 1 Holliday junction DNA helicase RuvB P-loop domain DNA_pol3_tau_5 PF12170.8 gi|89257153|ref|YP_514515.1| - 6.1e-06 26.3 6.4 6.1e-06 26.3 6.4 2.3 2 0 0 2 2 1 1 DNA polymerase III tau subunit V interacting with alpha AAA_22 PF13401.6 gi|89257153|ref|YP_514515.1| - 6.1e-05 23.3 0.1 0.00025 21.3 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|89257153|ref|YP_514515.1| - 6.1e-05 23.1 3.6 6.7e-05 22.9 0.1 2.9 2 2 1 3 3 3 1 AAA domain AAA_18 PF13238.6 gi|89257153|ref|YP_514515.1| - 7.5e-05 23.3 1.2 0.00028 21.4 0.0 2.5 3 0 0 3 3 2 1 AAA domain AAA_5 PF07728.14 gi|89257153|ref|YP_514515.1| - 0.0001 22.3 0.1 0.0006 19.8 0.1 2.4 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|89257153|ref|YP_514515.1| - 0.00012 22.5 0.1 0.0005 20.5 0.1 2.2 1 1 0 1 1 1 1 AAA ATPase domain Rad17 PF03215.15 gi|89257153|ref|YP_514515.1| - 0.00014 21.8 0.0 0.00034 20.6 0.0 1.7 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_30 PF13604.6 gi|89257153|ref|YP_514515.1| - 0.0027 17.4 0.0 0.008 15.9 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_assoc_2 PF16193.5 gi|89257153|ref|YP_514515.1| - 0.01 16.1 0.1 0.051 13.9 0.1 2.4 1 1 0 1 1 1 0 AAA C-terminal domain ResIII PF04851.15 gi|89257153|ref|YP_514515.1| - 0.012 15.7 8.7 0.39 10.7 0.0 3.2 2 2 0 3 3 3 0 Type III restriction enzyme, res subunit TsaE PF02367.17 gi|89257153|ref|YP_514515.1| - 0.033 14.2 0.1 0.079 13.0 0.1 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE RsgA_GTPase PF03193.16 gi|89257153|ref|YP_514515.1| - 0.034 14.1 3.1 0.078 12.9 0.0 2.9 3 0 0 3 3 3 0 RsgA GTPase Mg_chelatase PF01078.21 gi|89257153|ref|YP_514515.1| - 0.047 13.1 0.1 0.13 11.6 0.0 1.8 2 0 0 2 2 1 0 Magnesium chelatase, subunit ChlI AAA_7 PF12775.7 gi|89257153|ref|YP_514515.1| - 0.052 13.1 3.8 0.3 10.6 0.4 3.1 2 2 0 2 2 2 0 P-loop containing dynein motor region AAA_19 PF13245.6 gi|89257153|ref|YP_514515.1| - 0.072 13.4 1.7 0.71 10.2 0.6 2.8 2 1 0 2 2 2 0 AAA domain SKI PF01202.22 gi|89257153|ref|YP_514515.1| - 0.08 13.1 0.3 0.08 13.1 0.3 2.5 3 0 0 3 3 3 0 Shikimate kinase AAA_28 PF13521.6 gi|89257153|ref|YP_514515.1| - 0.18 12.0 0.4 0.46 10.7 0.4 1.7 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|89257153|ref|YP_514515.1| - 0.65 10.5 3.6 2 8.9 0.2 2.8 2 1 0 2 2 2 0 ABC transporter LpxC PF03331.13 gi|89257154|ref|YP_514516.1| - 4.6e-94 314.9 0.1 5.2e-94 314.7 0.1 1.0 1 0 0 1 1 1 1 UDP-3-O-acyl N-acetylglycosamine deacetylase DUF4269 PF14091.6 gi|89257154|ref|YP_514516.1| - 0.015 15.6 0.0 0.024 14.9 0.0 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4269) Tubulin PF00091.25 gi|89257155|ref|YP_514517.1| - 7.2e-41 140.6 0.6 1.4e-40 139.7 0.6 1.5 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 gi|89257155|ref|YP_514517.1| - 2e-37 127.4 7.2 2.2e-37 127.2 5.1 2.2 2 0 0 2 2 2 1 FtsZ family, C-terminal domain NAD_binding_10 PF13460.6 gi|89257155|ref|YP_514517.1| - 0.0058 16.6 0.5 0.021 14.7 0.0 2.1 2 0 0 2 2 2 1 NAD(P)H-binding NmrA PF05368.13 gi|89257155|ref|YP_514517.1| - 0.086 12.4 1.5 1.2 8.6 0.4 2.5 1 1 1 2 2 2 0 NmrA-like family dUTPase PF00692.19 gi|89257155|ref|YP_514517.1| - 0.15 11.7 0.7 1 9.1 0.2 2.1 2 0 0 2 2 2 0 dUTPase FtsA PF14450.6 gi|89257156|ref|YP_514518.1| - 5.1e-32 110.4 2.5 5.2e-22 78.2 0.0 2.2 2 0 0 2 2 2 2 Cell division protein FtsA SHS2_FTSA PF02491.20 gi|89257156|ref|YP_514518.1| - 6.9e-22 77.6 1.8 2.7e-21 75.7 0.1 2.6 3 0 0 3 3 3 1 SHS2 domain inserted in FTSA MreB_Mbl PF06723.13 gi|89257156|ref|YP_514518.1| - 1.4e-16 60.3 0.4 6.3e-16 58.1 0.0 2.0 2 0 0 2 2 2 1 MreB/Mbl protein PilM_2 PF11104.8 gi|89257156|ref|YP_514518.1| - 3.1e-11 42.9 2.0 5.7e-08 32.2 0.0 3.2 3 0 0 3 3 3 3 Type IV pilus assembly protein PilM; FtsQ PF03799.15 gi|89257157|ref|YP_514519.1| - 2.2e-11 44.6 0.0 3.3e-11 44.0 0.0 1.3 1 0 0 1 1 1 1 Cell division protein FtsQ POTRA_1 PF08478.10 gi|89257157|ref|YP_514519.1| - 9.8e-05 22.6 0.2 0.0002 21.6 0.2 1.5 1 0 0 1 1 1 1 POTRA domain, FtsQ-type ABC2_membrane_3 PF12698.7 gi|89257157|ref|YP_514519.1| - 0.063 12.4 7.2 0.078 12.1 7.2 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein Dala_Dala_lig_C PF07478.13 gi|89257158|ref|YP_514520.1| - 2.8e-49 167.4 0.0 3.8e-49 167.0 0.0 1.2 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus Dala_Dala_lig_N PF01820.21 gi|89257158|ref|YP_514520.1| - 5.1e-16 59.0 0.2 1.1e-14 54.8 0.1 2.5 2 1 0 2 2 2 1 D-ala D-ala ligase N-terminus ATP-grasp_3 PF02655.14 gi|89257158|ref|YP_514520.1| - 6.3e-13 49.1 0.0 8.7e-13 48.6 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|89257158|ref|YP_514520.1| - 1.4e-11 44.3 0.0 1.9e-11 43.9 0.0 1.1 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain RimK PF08443.11 gi|89257158|ref|YP_514520.1| - 2.8e-07 30.3 0.0 5.6e-07 29.3 0.0 1.5 1 1 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_4 PF13535.6 gi|89257158|ref|YP_514520.1| - 3.9e-07 29.8 0.2 5.7e-06 26.0 0.2 2.2 1 1 0 1 1 1 1 ATP-grasp domain ATP-grasp PF02222.22 gi|89257158|ref|YP_514520.1| - 4e-05 23.3 0.0 6.1e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain NAD_binding_4 PF07993.12 gi|89257158|ref|YP_514520.1| - 0.041 13.1 0.6 3.9 6.6 0.0 2.2 1 1 0 2 2 2 0 Male sterility protein ATPgrasp_ST PF14397.6 gi|89257158|ref|YP_514520.1| - 0.047 12.9 0.0 0.5 9.6 0.0 2.4 3 1 0 3 3 3 0 Sugar-transfer associated ATP-grasp ATPgrasp_YheCD PF14398.6 gi|89257158|ref|YP_514520.1| - 0.069 12.4 0.0 0.14 11.4 0.0 1.5 1 0 0 1 1 1 0 YheC/D like ATP-grasp TTL PF03133.15 gi|89257158|ref|YP_514520.1| - 0.078 12.1 0.0 0.18 10.9 0.0 1.6 2 0 0 2 2 2 0 Tubulin-tyrosine ligase family MafB19-deam PF14437.6 gi|89257159|ref|YP_514521.1| - 1.9e-30 105.4 0.0 2.1e-30 105.3 0.0 1.0 1 0 0 1 1 1 1 MafB19-like deaminase dCMP_cyt_deam_1 PF00383.23 gi|89257159|ref|YP_514521.1| - 1.2e-22 79.7 0.0 1.6e-22 79.3 0.0 1.2 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region SNAD4 PF18750.1 gi|89257159|ref|YP_514521.1| - 0.0041 17.2 0.0 0.019 15.1 0.0 1.9 1 1 1 2 2 2 1 Secreted Novel AID/APOBEC-like Deaminase 4 APOBEC2 PF18772.1 gi|89257159|ref|YP_514521.1| - 0.017 15.2 0.0 0.023 14.7 0.0 1.5 1 1 0 1 1 1 0 APOBEC2 NAD2 PF18782.1 gi|89257159|ref|YP_514521.1| - 0.046 13.8 0.0 0.058 13.5 0.0 1.4 1 1 0 1 1 1 0 Novel AID APOBEC clade 2 Bd3614-deam PF14439.6 gi|89257159|ref|YP_514521.1| - 0.06 13.4 0.2 0.12 12.4 0.1 1.6 1 1 0 1 1 1 0 Bd3614-like deaminase NAD1 PF18778.1 gi|89257159|ref|YP_514521.1| - 0.081 13.0 0.0 0.13 12.3 0.0 1.4 1 1 0 1 1 1 0 Novel AID APOBEC clade 1 APOBEC_N PF08210.11 gi|89257159|ref|YP_514521.1| - 0.11 12.4 0.0 0.11 12.4 0.0 1.3 1 1 0 1 1 1 0 APOBEC-like N-terminal domain APOBEC3 PF18771.1 gi|89257159|ref|YP_514521.1| - 0.15 12.2 0.0 0.24 11.5 0.0 1.6 2 0 0 2 2 2 0 APOBEC3 S1 PF00575.23 gi|89257160|ref|YP_514522.1| - 7.6e-94 308.1 25.5 3.5e-23 81.7 0.7 6.1 6 0 0 6 6 6 6 S1 RNA binding domain S1_2 PF13509.6 gi|89257160|ref|YP_514522.1| - 2e-09 37.4 9.7 1.1 9.4 0.0 7.7 6 4 0 6 6 6 5 S1 domain PCB_OB PF17092.5 gi|89257160|ref|YP_514522.1| - 5e-08 33.7 0.6 1.7 9.4 0.0 5.3 2 1 3 5 5 5 2 Penicillin-binding protein OB-like domain RNase_II_C_S1 PF18614.1 gi|89257160|ref|YP_514522.1| - 1.5e-06 28.1 0.2 1.6 8.7 0.0 5.4 5 1 0 5 5 5 2 RNase II-type exonuclease C-terminal S1 domain CusF_Ec PF11604.8 gi|89257160|ref|YP_514522.1| - 0.015 15.3 0.7 4.9 7.2 0.0 4.8 5 0 0 5 5 5 0 Copper binding periplasmic protein CusF YcgR PF07317.12 gi|89257160|ref|YP_514522.1| - 0.033 14.1 0.9 1.7 8.6 0.0 2.9 3 0 0 3 3 3 0 Flagellar regulator YcgR CsrA PF02599.16 gi|89257160|ref|YP_514522.1| - 1.2 9.2 16.3 2.9 7.9 0.1 4.9 5 0 0 5 5 5 0 Global regulator protein family Sua5_yciO_yrdC PF01300.18 gi|89257161|ref|YP_514523.1| - 5.1e-31 107.6 0.2 5.6e-31 107.4 0.2 1.0 1 0 0 1 1 1 1 Telomere recombination Plasmod_dom_1 PF09715.10 gi|89257161|ref|YP_514523.1| - 0.039 14.0 0.5 12 6.1 0.1 2.7 2 0 0 2 2 2 0 Plasmodium protein of unknown function (Plasmod_dom_1) DUF1350 PF07082.11 gi|89257161|ref|YP_514523.1| - 0.044 13.1 0.0 0.054 12.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1350) Leptin PF02024.15 gi|89257161|ref|YP_514523.1| - 0.058 13.2 1.0 0.55 10.0 0.1 2.3 1 1 1 2 2 2 0 Leptin MerT PF02411.15 gi|89257162|ref|YP_514524.1| - 1.6 8.8 7.4 0.24 11.4 1.4 2.2 2 1 0 2 2 2 0 MerT mercuric transport protein PIG-Y PF15159.6 gi|89257162|ref|YP_514524.1| - 3 8.8 9.3 47 5.0 5.5 2.8 2 1 1 3 3 3 0 Phosphatidylinositol N-acetylglucosaminyltransferase subunit Y Acyltransferase PF01553.21 gi|89257163|ref|YP_514525.1| - 5.1e-15 55.3 0.0 8.1e-15 54.6 0.0 1.3 1 0 0 1 1 1 1 Acyltransferase Competence PF03772.16 gi|89257164|ref|YP_514526.1| - 1e-48 166.0 49.5 1.5e-48 165.5 49.5 1.3 1 0 0 1 1 1 1 Competence protein DUF4131 PF13567.6 gi|89257164|ref|YP_514526.1| - 9.2e-08 31.9 0.0 9.2e-08 31.9 0.0 5.8 2 2 4 6 6 6 1 Domain of unknown function (DUF4131) TrkA_N PF02254.18 gi|89257164|ref|YP_514526.1| - 0.072 13.4 0.3 0.18 12.1 0.3 1.6 1 0 0 1 1 1 0 TrkA-N domain RLAN PF14401.6 gi|89257165|ref|YP_514527.1| - 3.2e-32 111.3 0.2 4.2e-32 110.9 0.2 1.1 1 0 0 1 1 1 1 RimK-like ATPgrasp N-terminal domain Hox9_act PF04617.13 gi|89257165|ref|YP_514527.1| - 0.09 13.5 0.0 0.17 12.6 0.0 1.4 1 0 0 1 1 1 0 Hox9 activation region RimK PF08443.11 gi|89257166|ref|YP_514528.1| - 9.3e-08 31.9 0.0 1.1e-07 31.7 0.0 1.0 1 0 0 1 1 1 1 RimK-like ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|89257166|ref|YP_514528.1| - 0.00013 21.6 0.0 0.00014 21.4 0.0 1.1 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp_4 PF13535.6 gi|89257166|ref|YP_514528.1| - 0.0012 18.4 0.0 0.0017 18.0 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.19 gi|89257166|ref|YP_514528.1| - 0.002 17.9 0.0 0.0024 17.7 0.0 1.1 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp PF02222.22 gi|89257166|ref|YP_514528.1| - 0.0037 16.8 0.0 0.0043 16.6 0.0 1.1 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|89257166|ref|YP_514528.1| - 0.04 13.4 0.0 0.046 13.2 0.0 1.1 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain ABC_tran PF00005.27 gi|89257167|ref|YP_514529.1| - 7.6e-32 110.7 0.0 1.1e-31 110.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|89257167|ref|YP_514529.1| - 1.6e-05 24.9 2.1 0.031 14.1 0.5 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 gi|89257167|ref|YP_514529.1| - 3.5e-05 23.8 0.1 5.9e-05 23.0 0.1 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_29 PF13555.6 gi|89257167|ref|YP_514529.1| - 0.0016 18.2 0.1 0.0026 17.4 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain MMR_HSR1 PF01926.23 gi|89257167|ref|YP_514529.1| - 0.004 17.2 0.7 0.012 15.7 0.2 1.9 2 0 0 2 2 2 1 50S ribosome-binding GTPase AAA_22 PF13401.6 gi|89257167|ref|YP_514529.1| - 0.0042 17.4 0.2 0.16 12.2 0.1 2.2 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.6 gi|89257167|ref|YP_514529.1| - 0.0075 16.0 0.0 0.01 15.6 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_16 PF13191.6 gi|89257167|ref|YP_514529.1| - 0.0097 16.3 0.0 0.015 15.7 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain Rad17 PF03215.15 gi|89257167|ref|YP_514529.1| - 0.02 14.8 0.4 0.18 11.7 0.1 2.1 2 0 0 2 2 2 0 Rad17 P-loop domain IstB_IS21 PF01695.17 gi|89257167|ref|YP_514529.1| - 0.028 14.1 0.0 0.051 13.3 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_23 PF13476.6 gi|89257167|ref|YP_514529.1| - 0.033 14.7 0.1 0.055 14.0 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|89257167|ref|YP_514529.1| - 0.05 14.0 0.0 0.25 11.8 0.0 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) T2SSE PF00437.20 gi|89257167|ref|YP_514529.1| - 0.057 12.5 0.0 0.11 11.6 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_18 PF13238.6 gi|89257167|ref|YP_514529.1| - 0.059 13.9 0.2 0.16 12.5 0.1 1.8 2 0 0 2 2 2 0 AAA domain DUF87 PF01935.17 gi|89257167|ref|YP_514529.1| - 0.067 13.3 0.7 0.13 12.3 0.1 1.7 2 0 0 2 2 2 0 Helicase HerA, central domain PRK PF00485.18 gi|89257167|ref|YP_514529.1| - 0.11 12.3 0.1 0.2 11.4 0.1 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family DUF815 PF05673.13 gi|89257167|ref|YP_514529.1| - 0.15 11.2 0.1 0.24 10.5 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) TsaE PF02367.17 gi|89257167|ref|YP_514529.1| - 0.18 11.8 0.0 0.33 10.9 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE SbcCD_C PF13558.6 gi|89257167|ref|YP_514529.1| - 0.2 11.9 0.2 0.71 10.2 0.2 1.9 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit SMC_N PF02463.19 gi|89257167|ref|YP_514529.1| - 0.22 11.0 0.2 1.3 8.5 0.1 1.9 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain YGGT PF02325.17 gi|89257168|ref|YP_514530.1| - 6.4e-34 116.2 21.7 2.4e-17 63.1 6.0 2.4 2 0 0 2 2 2 2 YGGT family Peptidase_M14 PF00246.24 gi|89257169|ref|YP_514531.1| - 2.3e-06 27.6 0.0 3.9e-06 26.9 0.0 1.4 1 0 0 1 1 1 1 Zinc carboxypeptidase AstE_AspA PF04952.14 gi|89257169|ref|YP_514531.1| - 3e-05 23.2 0.0 4.2e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family DUF2817 PF10994.8 gi|89257169|ref|YP_514531.1| - 0.0012 18.3 0.0 0.0019 17.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2817) DDE_3 PF13358.6 gi|89257170|ref|YP_514532.1| - 2.3e-30 105.3 0.1 7.9e-30 103.5 0.0 1.8 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.16 gi|89257170|ref|YP_514532.1| - 0.0096 16.0 1.6 0.027 14.5 0.7 2.3 2 1 0 2 2 2 1 Transposase HTH_40 PF14493.6 gi|89257170|ref|YP_514532.1| - 0.033 14.6 0.1 0.23 11.9 0.0 2.3 3 1 0 3 3 3 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|89257170|ref|YP_514532.1| - 0.048 13.7 0.0 0.12 12.5 0.0 1.6 2 0 0 2 2 2 0 Winged helix-turn helix rve PF00665.26 gi|89257170|ref|YP_514532.1| - 0.15 12.3 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 Integrase core domain DDE_Tnp_ISAZ013 PF07592.11 gi|89257170|ref|YP_514532.1| - 0.17 10.9 0.3 1.1 8.1 0.1 2.0 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain DDE_Tnp_1 PF01609.21 gi|89257171|ref|YP_514533.1| - 3.8e-10 39.8 0.1 4.7e-10 39.5 0.1 1.1 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 gi|89257171|ref|YP_514533.1| - 4.7e-05 23.5 0.0 6.2e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF4096 PF13340.6 gi|89257171|ref|YP_514533.1| - 0.0039 17.4 0.0 0.007 16.6 0.0 1.4 1 0 0 1 1 1 1 Putative transposase of IS4/5 family (DUF4096) DDE_Tnp_1_2 PF13586.6 gi|89257171|ref|YP_514533.1| - 0.021 15.2 0.0 0.044 14.2 0.0 1.6 1 0 0 1 1 1 0 Transposase DDE domain AICARFT_IMPCHas PF01808.18 gi|89257172|ref|YP_514534.1| - 1.3e-117 392.5 1.2 1.7e-117 392.1 1.2 1.1 1 0 0 1 1 1 1 AICARFT/IMPCHase bienzyme MGS PF02142.22 gi|89257172|ref|YP_514534.1| - 5e-27 93.9 0.1 3.4e-26 91.2 0.0 2.2 2 0 0 2 2 2 1 MGS-like domain Adenylsucc_synt PF00709.21 gi|89257173|ref|YP_514535.1| - 4.6e-157 523.2 0.2 5.2e-157 523.1 0.2 1.0 1 0 0 1 1 1 1 Adenylosuccinate synthetase Pribosyltran PF00156.27 gi|89257174|ref|YP_514536.1| - 4e-32 110.9 0.0 4.5e-32 110.8 0.0 1.0 1 0 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.6 gi|89257174|ref|YP_514536.1| - 0.062 12.8 0.1 0.17 11.4 0.0 1.6 1 1 0 1 1 1 0 Phosphoribosyl transferase UPRTase PF14681.6 gi|89257174|ref|YP_514536.1| - 0.12 11.8 0.0 0.17 11.3 0.0 1.4 1 1 0 1 1 1 0 Uracil phosphoribosyltransferase ABC-3 PF00950.17 gi|89257175|ref|YP_514537.1| - 2.7e-50 171.3 38.4 3.7e-50 170.8 38.4 1.2 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.18 gi|89257175|ref|YP_514537.1| - 6.6e-06 25.3 33.8 6.6e-06 25.3 33.8 2.0 1 1 1 2 2 2 1 FecCD transport family ABC_tran PF00005.27 gi|89257176|ref|YP_514538.1| - 2.6e-24 86.3 0.0 3.9e-24 85.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|89257176|ref|YP_514538.1| - 1.9e-11 44.3 2.8 2.3e-05 24.3 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|89257176|ref|YP_514538.1| - 1.2e-05 24.9 1.7 0.00015 21.3 1.7 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain Dynamin_N PF00350.23 gi|89257176|ref|YP_514538.1| - 0.00043 20.4 0.7 0.0012 18.9 0.7 1.6 1 1 0 1 1 1 1 Dynamin family MMR_HSR1 PF01926.23 gi|89257176|ref|YP_514538.1| - 0.00055 20.0 0.4 0.0014 18.7 0.1 1.9 2 1 0 2 2 2 1 50S ribosome-binding GTPase SbcCD_C PF13558.6 gi|89257176|ref|YP_514538.1| - 0.0031 17.7 0.0 0.056 13.7 0.0 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_15 PF13175.6 gi|89257176|ref|YP_514538.1| - 0.0048 16.7 5.3 0.0089 15.8 5.3 1.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|89257176|ref|YP_514538.1| - 0.015 15.8 5.8 0.14 12.6 5.8 2.3 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|89257176|ref|YP_514538.1| - 0.027 13.6 0.1 0.055 12.7 0.1 1.4 1 0 0 1 1 1 0 NB-ARC domain AAA PF00004.29 gi|89257176|ref|YP_514538.1| - 0.033 14.6 1.3 0.22 11.9 1.3 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 gi|89257176|ref|YP_514538.1| - 0.034 13.9 0.5 0.044 13.5 0.1 1.6 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|89257176|ref|YP_514538.1| - 0.053 13.4 0.6 0.11 12.4 0.2 1.7 2 1 0 2 2 2 0 RsgA GTPase AAA_29 PF13555.6 gi|89257176|ref|YP_514538.1| - 0.077 12.8 0.0 0.2 11.5 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF87 PF01935.17 gi|89257176|ref|YP_514538.1| - 0.16 12.0 1.5 0.28 11.2 1.5 1.8 1 1 0 1 1 1 0 Helicase HerA, central domain AAA_33 PF13671.6 gi|89257176|ref|YP_514538.1| - 0.17 12.1 0.1 0.19 11.9 0.1 1.3 1 1 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|89257176|ref|YP_514538.1| - 0.18 10.9 0.1 0.3 10.1 0.1 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_18 PF13238.6 gi|89257176|ref|YP_514538.1| - 0.24 11.9 0.6 0.58 10.7 0.6 1.9 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|89257176|ref|YP_514538.1| - 0.26 10.8 0.1 8.6 5.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.6 gi|89257176|ref|YP_514538.1| - 0.38 10.8 1.7 6.8 6.7 0.1 2.2 1 1 1 2 2 2 0 AAA domain NACHT PF05729.12 gi|89257176|ref|YP_514538.1| - 0.38 10.6 2.5 2.4 8.1 0.4 2.1 2 0 0 2 2 2 0 NACHT domain ZnuA PF01297.17 gi|89257177|ref|YP_514539.1| - 4.3e-34 118.1 2.7 5.3e-34 117.8 2.7 1.0 1 0 0 1 1 1 1 Zinc-uptake complex component A periplasmic Peripla_BP_6 PF13458.6 gi|89257177|ref|YP_514539.1| - 0.0083 15.8 0.0 0.014 15.0 0.0 1.4 1 0 0 1 1 1 1 Periplasmic binding protein TPP_enzyme_M PF00205.22 gi|89257177|ref|YP_514539.1| - 0.077 12.7 0.0 3.7 7.3 0.0 2.3 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, central domain TFR_dimer PF04253.15 gi|89257177|ref|YP_514539.1| - 0.084 13.0 0.0 0.19 11.8 0.0 1.6 1 0 0 1 1 1 0 Transferrin receptor-like dimerisation domain Gly-zipper_Omp PF13488.6 gi|89257178|ref|YP_514540.1| - 0.012 15.6 21.6 0.023 14.7 21.6 1.5 1 0 0 1 1 1 0 Glycine zipper TraT PF05818.12 gi|89257178|ref|YP_514540.1| - 0.06 13.0 3.2 0.071 12.8 3.2 1.4 1 0 0 1 1 1 0 Enterobacterial TraT complement resistance protein Glug PF07581.12 gi|89257178|ref|YP_514540.1| - 4.4 7.9 18.9 5.5 7.6 1.9 3.7 2 1 1 3 3 3 0 The GLUG motif Rick_17kDa_Anti PF05433.15 gi|89257178|ref|YP_514540.1| - 6.8 6.6 28.9 4.6 7.2 9.3 2.1 1 1 1 2 2 2 0 Glycine zipper 2TM domain FMN_red PF03358.15 gi|89257179|ref|YP_514541.1| - 5.1e-14 52.3 0.0 7.4e-14 51.8 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_5 PF12724.7 gi|89257179|ref|YP_514541.1| - 2.2e-07 31.2 0.0 0.006 16.8 0.3 2.2 1 1 1 2 2 2 2 Flavodoxin domain Flavodoxin_2 PF02525.17 gi|89257179|ref|YP_514541.1| - 2.2e-05 24.3 0.0 2.8e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_1 PF00258.25 gi|89257179|ref|YP_514541.1| - 0.0019 18.4 0.1 0.003 17.8 0.1 1.5 1 1 0 1 1 1 1 Flavodoxin ILVD_EDD PF00920.21 gi|89257179|ref|YP_514541.1| - 0.0054 15.4 0.1 0.0083 14.8 0.1 1.2 1 0 0 1 1 1 1 Dehydratase family Virul_fac_BrkB PF03631.15 gi|89257180|ref|YP_514542.1| - 6.4e-47 160.3 30.1 7.7e-47 160.1 30.1 1.1 1 0 0 1 1 1 1 Virulence factor BrkB NMN_transporter PF04973.12 gi|89257181|ref|YP_514543.1| - 1.3e-27 96.9 33.8 1.6e-27 96.6 33.8 1.2 1 0 0 1 1 1 1 Nicotinamide mononucleotide transporter DUF4131 PF13567.6 gi|89257181|ref|YP_514543.1| - 7.5 6.2 9.7 1.5 8.5 5.5 2.0 1 1 0 2 2 2 0 Domain of unknown function (DUF4131) PriA_3primeBD PF17764.1 gi|89257182|ref|YP_514544.1| - 1e-16 60.6 0.2 1e-16 60.6 0.2 2.7 3 0 0 3 3 3 1 3′ DNA-binding domain (3′BD) PriA_C PF18074.1 gi|89257182|ref|YP_514544.1| - 1.1e-15 58.2 0.7 1.1e-14 55.0 0.2 2.8 2 0 0 2 2 2 1 Primosomal protein N C-terminal domain DEAD PF00270.29 gi|89257182|ref|YP_514544.1| - 8.6e-15 54.9 1.3 1.8e-14 53.9 0.4 2.1 2 0 0 2 2 2 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|89257182|ref|YP_514544.1| - 1.3e-12 48.1 0.1 3.8e-12 46.5 0.1 1.9 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|89257182|ref|YP_514544.1| - 1.3e-07 31.9 15.1 0.00076 19.8 0.1 4.3 5 0 0 5 5 5 2 Helicase conserved C-terminal domain ATPase_2 PF01637.18 gi|89257182|ref|YP_514544.1| - 0.0021 18.0 0.1 0.0021 18.0 0.1 1.9 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea PriA_CRR PF18319.1 gi|89257182|ref|YP_514544.1| - 0.0028 17.6 7.3 0.0028 17.6 7.3 2.7 3 0 0 3 3 3 1 PriA DNA helicase Cys-rich region (CRR) domain zf-CHY PF05495.12 gi|89257182|ref|YP_514544.1| - 0.011 16.2 6.6 0.028 14.9 6.6 1.6 1 0 0 1 1 1 0 CHY zinc finger Trm5_N PF18093.1 gi|89257182|ref|YP_514544.1| - 0.023 14.6 0.1 0.078 12.9 0.1 1.9 1 0 0 1 1 1 0 tRNA methyltransferase 5 N-terminal domain AAA_30 PF13604.6 gi|89257182|ref|YP_514544.1| - 0.024 14.4 0.0 0.059 13.1 0.0 1.7 1 0 0 1 1 1 0 AAA domain Mtr2 PF10429.9 gi|89257182|ref|YP_514544.1| - 0.039 13.9 0.6 0.2 11.6 0.1 2.4 2 0 0 2 2 2 0 Nuclear pore RNA shuttling protein Mtr2 AAA_19 PF13245.6 gi|89257182|ref|YP_514544.1| - 0.067 13.5 0.1 0.22 11.9 0.0 1.9 1 1 0 1 1 1 0 AAA domain DUF723 PF05265.13 gi|89257182|ref|YP_514544.1| - 0.074 13.0 2.0 14 5.7 0.3 3.2 2 1 1 3 3 3 0 Protein of unknown function (DUF723) zinc-ribbons_6 PF07191.12 gi|89257182|ref|YP_514544.1| - 0.13 12.2 9.3 0.67 10.0 9.6 1.9 1 1 1 2 2 2 0 zinc-ribbons zf-ribbon_3 PF13248.6 gi|89257182|ref|YP_514544.1| - 0.35 10.3 11.1 0.033 13.6 1.6 2.8 2 1 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|89257182|ref|YP_514544.1| - 0.8 10.5 7.0 1.7 9.4 7.0 1.5 1 0 0 1 1 1 0 zinc-ribbon family HypA PF01155.19 gi|89257182|ref|YP_514544.1| - 7.3 6.7 8.8 48 4.0 8.7 2.3 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DDE_3 PF13358.6 gi|89257183|ref|YP_514545.1| - 2.3e-30 105.3 0.1 7.9e-30 103.5 0.0 1.8 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_Tnp_IS630 PF01710.16 gi|89257183|ref|YP_514545.1| - 0.0096 16.0 1.6 0.027 14.5 0.7 2.3 2 1 0 2 2 2 1 Transposase HTH_40 PF14493.6 gi|89257183|ref|YP_514545.1| - 0.033 14.6 0.1 0.23 11.9 0.0 2.3 3 1 0 3 3 3 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|89257183|ref|YP_514545.1| - 0.048 13.7 0.0 0.12 12.5 0.0 1.6 2 0 0 2 2 2 0 Winged helix-turn helix rve PF00665.26 gi|89257183|ref|YP_514545.1| - 0.15 12.3 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 Integrase core domain DDE_Tnp_ISAZ013 PF07592.11 gi|89257183|ref|YP_514545.1| - 0.17 10.9 0.3 1.1 8.1 0.1 2.0 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain Methyltransf_23 PF13489.6 gi|89257185|ref|YP_514547.1| - 5.2e-06 26.4 0.0 6.3e-06 26.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|89257185|ref|YP_514547.1| - 4.1e-05 24.2 0.0 8.7e-05 23.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|89257185|ref|YP_514547.1| - 6e-05 22.9 0.4 0.00011 22.0 0.4 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|89257185|ref|YP_514547.1| - 0.0013 19.5 0.4 0.0033 18.1 0.4 1.8 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|89257185|ref|YP_514547.1| - 0.0024 17.4 0.0 0.0029 17.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain FtsJ PF01728.19 gi|89257185|ref|YP_514547.1| - 0.0032 17.6 0.0 0.004 17.3 0.0 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase GidB PF02527.15 gi|89257185|ref|YP_514547.1| - 0.0045 16.3 0.3 0.017 14.4 0.3 2.0 1 1 0 1 1 1 1 rRNA small subunit methyltransferase G Methyltransf_11 PF08241.12 gi|89257185|ref|YP_514547.1| - 0.013 16.2 0.0 0.021 15.5 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain MetW PF07021.12 gi|89257185|ref|YP_514547.1| - 0.013 15.1 0.0 0.017 14.8 0.0 1.1 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Methyltransf_2 PF00891.18 gi|89257185|ref|YP_514547.1| - 0.033 13.5 0.0 0.033 13.5 0.0 1.1 1 0 0 1 1 1 0 O-methyltransferase domain CMAS PF02353.20 gi|89257185|ref|YP_514547.1| - 0.14 11.5 0.0 0.17 11.1 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase ABC_tran PF00005.27 gi|89257186|ref|YP_514548.1| - 1.1e-52 178.2 0.5 3.1e-26 92.5 0.0 3.2 3 0 0 3 3 3 2 ABC transporter AAA_21 PF13304.6 gi|89257186|ref|YP_514548.1| - 6.2e-16 59.1 9.0 1.9e-05 24.7 0.0 4.4 2 2 1 4 4 4 4 AAA domain, putative AbiEii toxin, Type IV TA system ABC_tran_Xtn PF12848.7 gi|89257186|ref|YP_514548.1| - 1.2e-14 54.0 14.1 8.2e-12 45.0 7.9 3.1 3 0 0 3 3 3 2 ABC transporter SMC_N PF02463.19 gi|89257186|ref|YP_514548.1| - 3.2e-07 30.0 2.2 1.8 7.9 0.0 4.2 4 0 0 4 4 4 3 RecF/RecN/SMC N terminal domain AAA_18 PF13238.6 gi|89257186|ref|YP_514548.1| - 6.9e-06 26.6 0.2 0.13 12.8 0.0 3.2 3 1 0 3 3 3 2 AAA domain AAA_33 PF13671.6 gi|89257186|ref|YP_514548.1| - 1.7e-05 25.0 0.9 0.4 10.9 0.0 3.4 3 1 0 3 3 3 2 AAA domain MMR_HSR1 PF01926.23 gi|89257186|ref|YP_514548.1| - 1.9e-05 24.7 1.5 0.036 14.2 0.1 2.7 2 0 0 2 2 2 2 50S ribosome-binding GTPase AAA_22 PF13401.6 gi|89257186|ref|YP_514548.1| - 3.4e-05 24.1 0.2 0.011 16.0 0.0 3.0 3 1 0 3 3 3 1 AAA domain AAA_29 PF13555.6 gi|89257186|ref|YP_514548.1| - 3.8e-05 23.4 2.4 0.091 12.5 0.1 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain Dynamin_N PF00350.23 gi|89257186|ref|YP_514548.1| - 7.6e-05 22.8 0.9 0.12 12.4 0.0 3.1 3 1 0 3 3 3 2 Dynamin family AAA_28 PF13521.6 gi|89257186|ref|YP_514548.1| - 0.00021 21.6 0.6 1.1 9.4 0.0 3.2 3 1 0 3 3 3 2 AAA domain RsgA_GTPase PF03193.16 gi|89257186|ref|YP_514548.1| - 0.001 19.0 0.3 0.23 11.3 0.0 2.4 2 0 0 2 2 2 1 RsgA GTPase SbcCD_C PF13558.6 gi|89257186|ref|YP_514548.1| - 0.0014 18.8 0.7 3.7 7.9 0.0 4.1 2 2 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_24 PF13479.6 gi|89257186|ref|YP_514548.1| - 0.002 17.9 0.1 2.2 8.0 0.1 2.8 2 0 0 2 2 2 2 AAA domain MeaB PF03308.16 gi|89257186|ref|YP_514548.1| - 0.0021 17.1 0.2 1.1 8.2 0.0 2.4 2 0 0 2 2 2 2 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_14 PF13173.6 gi|89257186|ref|YP_514548.1| - 0.0083 16.2 0.0 5.9 6.9 0.0 3.5 3 1 1 4 4 3 1 AAA domain G-alpha PF00503.20 gi|89257186|ref|YP_514548.1| - 0.024 13.8 0.0 1.9 7.6 0.0 2.4 2 1 0 2 2 2 0 G-protein alpha subunit Arf PF00025.21 gi|89257186|ref|YP_514548.1| - 0.026 14.0 0.1 1.5 8.3 0.0 2.6 2 0 0 2 2 2 0 ADP-ribosylation factor family DLIC PF05783.11 gi|89257186|ref|YP_514548.1| - 0.044 12.6 0.6 2.3 7.0 0.0 2.1 2 0 0 2 2 2 0 Dynein light intermediate chain (DLIC) MRP-L46 PF11788.8 gi|89257186|ref|YP_514548.1| - 0.06 14.1 3.5 0.12 13.2 3.5 1.4 1 0 0 1 1 1 0 39S mitochondrial ribosomal protein L46 AAA_15 PF13175.6 gi|89257186|ref|YP_514548.1| - 0.09 12.5 6.0 1.4 8.6 0.2 3.2 3 1 1 4 4 4 0 AAA ATPase domain Amidase PF01425.21 gi|89257186|ref|YP_514548.1| - 0.096 11.6 0.0 0.17 10.8 0.0 1.3 1 0 0 1 1 1 0 Amidase NB-ARC PF00931.22 gi|89257186|ref|YP_514548.1| - 0.12 11.5 0.5 9.4 5.3 0.0 2.6 2 0 0 2 2 2 0 NB-ARC domain Roc PF08477.13 gi|89257186|ref|YP_514548.1| - 0.13 12.5 1.8 6.7 7.0 0.0 3.1 3 0 0 3 3 3 0 Ras of Complex, Roc, domain of DAPkinase LIP1 PF15904.5 gi|89257186|ref|YP_514548.1| - 0.13 12.6 0.0 0.46 10.9 0.0 1.9 2 0 0 2 2 1 0 LKB1 serine/threonine kinase interacting protein 1 AAA_13 PF13166.6 gi|89257186|ref|YP_514548.1| - 0.49 9.0 5.4 10 4.6 0.0 3.2 3 0 0 3 3 3 0 AAA domain FtsK_SpoIIIE PF01580.18 gi|89257186|ref|YP_514548.1| - 0.49 9.7 1.7 17 4.7 0.0 2.5 3 0 0 3 3 3 0 FtsK/SpoIIIE family DUF87 PF01935.17 gi|89257186|ref|YP_514548.1| - 8.8 6.3 11.4 19 5.3 0.2 3.8 4 0 0 4 4 4 0 Helicase HerA, central domain MFS_1 PF07690.16 gi|89257187|ref|YP_514549.1| - 8.1e-19 67.7 32.9 8.1e-19 67.7 32.9 2.0 1 1 1 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|89257187|ref|YP_514549.1| - 1.3e-13 50.6 13.7 1.3e-13 50.6 13.7 2.2 1 1 1 2 2 2 1 Sugar (and other) transporter TMEM89 PF15098.6 gi|89257187|ref|YP_514549.1| - 0.55 10.4 2.0 1.6 8.9 0.4 2.3 2 0 0 2 2 2 0 TMEM89 protein family Gram_pos_anchor PF00746.21 gi|89257187|ref|YP_514549.1| - 4.4 7.3 5.8 46 4.1 0.2 3.8 3 0 0 3 3 3 0 LPXTG cell wall anchor motif Lactamase_B_2 PF12706.7 gi|89257189|ref|YP_514551.1| - 1.5e-36 125.8 0.0 2.2e-36 125.3 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|89257189|ref|YP_514551.1| - 1.3e-14 54.4 0.0 1.7e-14 54.0 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|89257189|ref|YP_514551.1| - 0.00055 20.0 0.0 0.12 12.4 0.0 2.3 2 0 0 2 2 2 2 Metallo-beta-lactamase superfamily PY_rept_46 PF09689.10 gi|89257189|ref|YP_514551.1| - 0.086 13.4 0.2 0.086 13.4 0.2 1.9 2 0 0 2 2 2 0 Plasmodium yoelii repeat (PY_rept_46) LysE PF01810.18 gi|89257190|ref|YP_514552.1| - 1.3e-10 41.0 6.8 1.6e-10 40.7 6.8 1.0 1 0 0 1 1 1 1 LysE type translocator TauE PF01925.19 gi|89257191|ref|YP_514553.1| - 1.2e-12 48.0 10.3 1.3e-12 47.9 10.3 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF3458_C PF17432.2 gi|89257192|ref|YP_514554.1| - 7.9e-108 360.6 9.1 1.4e-107 359.8 9.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF3458_C) ARM repeats Peptidase_M1 PF01433.20 gi|89257192|ref|YP_514554.1| - 1.4e-56 191.5 0.7 3.6e-56 190.2 0.7 1.7 1 0 0 1 1 1 1 Peptidase family M1 domain DUF3458 PF11940.8 gi|89257192|ref|YP_514554.1| - 9e-35 119.0 0.6 2.6e-34 117.5 0.6 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF3458) Ig-like fold Peptidase_M1_N PF17900.1 gi|89257192|ref|YP_514554.1| - 3.4e-18 66.5 0.1 1e-17 64.9 0.1 1.9 1 0 0 1 1 1 1 Peptidase M1 N-terminal domain DUF2063 PF09836.9 gi|89257192|ref|YP_514554.1| - 0.0047 17.1 0.0 8 6.8 0.0 3.1 2 0 0 2 2 2 2 Putative DNA-binding domain Peptidase_M61 PF05299.12 gi|89257192|ref|YP_514554.1| - 0.088 13.2 0.0 0.43 11.0 0.0 2.2 1 0 0 1 1 1 0 M61 glycyl aminopeptidase HSP20 PF00011.21 gi|89257193|ref|YP_514555.1| - 1.7e-28 98.8 2.5 2.4e-28 98.2 2.5 1.2 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|89257193|ref|YP_514555.1| - 3.1e-12 45.9 0.0 4.9e-12 45.2 0.0 1.4 1 0 0 1 1 1 1 HSP20-like domain found in ArsA Frataxin_Cyay PF01491.16 gi|89257193|ref|YP_514555.1| - 0.002 18.2 1.1 0.11 12.6 0.0 2.2 1 1 1 2 2 2 1 Frataxin-like domain TubC_N PF18563.1 gi|89257193|ref|YP_514555.1| - 0.015 15.2 0.2 0.029 14.3 0.2 1.5 1 0 0 1 1 1 0 TubC N-terminal docking domain FKBP26_C PF18046.1 gi|89257193|ref|YP_514555.1| - 0.093 12.8 1.8 3.5 7.8 0.1 2.5 2 0 0 2 2 2 0 FKBP26_C-terminal CS PF04969.16 gi|89257193|ref|YP_514555.1| - 0.095 13.7 2.8 0.34 12.0 2.8 2.0 1 1 0 1 1 1 0 CS domain IGPS PF00218.21 gi|89257194|ref|YP_514556.1| - 1.9e-90 302.5 1.3 2.5e-90 302.1 1.3 1.1 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase PRAI PF00697.22 gi|89257194|ref|YP_514556.1| - 7.7e-53 179.2 0.1 1.4e-52 178.4 0.1 1.4 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase QRPTase_C PF01729.19 gi|89257194|ref|YP_514556.1| - 0.033 14.0 0.1 0.16 11.7 0.0 2.1 2 0 0 2 2 2 0 Quinolinate phosphoribosyl transferase, C-terminal domain Sarcoglycan_2 PF05510.13 gi|89257195|ref|YP_514557.1| - 0.028 13.2 0.2 0.03 13.1 0.2 1.0 1 0 0 1 1 1 0 Sarcoglycan alpha/epsilon PMSR PF01625.21 gi|89257196|ref|YP_514558.1| - 1.1e-54 184.8 9.2 1.4e-54 184.4 9.2 1.2 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase MbeB_N PF04837.12 gi|89257196|ref|YP_514558.1| - 0.028 14.7 0.8 0.053 13.8 0.8 1.4 1 0 0 1 1 1 0 MbeB-like, N-term conserved region C_GCAxxG_C_C PF09719.10 gi|89257196|ref|YP_514558.1| - 0.034 14.4 0.8 0.44 10.8 1.0 2.1 2 0 0 2 2 2 0 Putative redox-active protein (C_GCAxxG_C_C) DOPA_dioxygen PF08883.11 gi|89257196|ref|YP_514558.1| - 0.078 13.2 1.3 0.12 12.5 1.3 1.4 1 0 0 1 1 1 0 Dopa 4,5-dioxygenase family MS_channel PF00924.18 gi|89257196|ref|YP_514558.1| - 0.14 11.7 0.3 0.36 10.3 0.3 1.7 1 1 0 1 1 1 0 Mechanosensitive ion channel IBV_3B PF03622.13 gi|89257196|ref|YP_514558.1| - 0.18 12.0 2.2 15 5.8 0.2 2.6 2 0 0 2 2 2 0 IBV 3B protein NHase_alpha PF02979.16 gi|89257197|ref|YP_514559.1| - 2.4e-08 33.5 0.0 3.2e-08 33.1 0.0 1.1 1 0 0 1 1 1 1 Nitrile hydratase, alpha chain NHase_alpha PF02979.16 gi|89257198|ref|YP_514560.1| - 0.00026 20.4 0.1 0.0012 18.2 0.1 1.6 1 1 0 1 1 1 1 Nitrile hydratase, alpha chain Chorismate_bind PF00425.18 gi|89257200|ref|YP_514562.1| - 3.9e-81 272.4 0.0 5.2e-81 272.0 0.0 1.2 1 0 0 1 1 1 1 chorismate binding enzyme Anth_synt_I_N PF04715.13 gi|89257200|ref|YP_514562.1| - 2.5e-18 66.6 2.1 5.8e-17 62.2 0.6 3.0 2 1 0 2 2 2 1 Anthranilate synthase component I, N terminal region Trp_repressor PF01371.19 gi|89257201|ref|YP_514563.1| - 1.2e-19 70.2 0.7 1.3e-19 70.1 0.7 1.0 1 0 0 1 1 1 1 Trp repressor protein TnsD PF15978.5 gi|89257201|ref|YP_514563.1| - 0.00015 20.9 0.8 0.00024 20.2 0.8 1.5 1 1 0 1 1 1 1 Tn7-like transposition protein D HTH_24 PF13412.6 gi|89257201|ref|YP_514563.1| - 0.0063 16.1 2.5 0.0073 15.8 0.1 2.4 2 1 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.6 gi|89257201|ref|YP_514563.1| - 0.031 14.1 0.1 0.05 13.4 0.1 1.3 1 0 0 1 1 1 0 Homeodomain-like domain HTH_Crp_2 PF13545.6 gi|89257201|ref|YP_514563.1| - 0.033 14.2 0.0 0.055 13.4 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain RuvB_C PF05491.13 gi|89257201|ref|YP_514563.1| - 0.055 13.4 0.2 0.079 12.8 0.2 1.2 1 0 0 1 1 1 0 RuvB C-terminal winged helix domain RNase_E_G PF10150.9 gi|89257202|ref|YP_514564.1| - 1.6e-96 322.9 5.7 2.9e-96 322.0 5.7 1.4 1 0 0 1 1 1 1 Ribonuclease E/G family S1 PF00575.23 gi|89257202|ref|YP_514564.1| - 1.5e-07 31.7 0.4 3.7e-07 30.4 0.4 1.7 1 0 0 1 1 1 1 S1 RNA binding domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Francisella_tularensis_holarctica_LVS_uid58595/NC_007880.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Francisella_tularensis_holarctica_LVS_uid58595/NC_007880.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Francisella_tularensis_holarctica_LVS_uid58595/NC_007880.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Francisella_tularensis_holarctica_LVS_uid58595/NC_007880.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Sun Mar 24 02:33:59 2019 # [ok]