# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Aldedh PF00171.22 AHV91033.1 - 8.9e-124 413.5 0.1 1.5e-123 412.8 0.1 1.2 1 0 0 1 1 1 1 Aldehyde dehydrogenase family Pro_dh PF01619.18 AHV91033.1 - 3.3e-100 335.4 0.0 5.1e-100 334.8 0.0 1.3 1 0 0 1 1 1 1 Proline dehydrogenase Pro_dh-DNA_bdg PF14850.6 AHV91033.1 - 8.2e-47 158.4 0.1 2.4e-46 156.9 0.1 1.9 1 0 0 1 1 1 1 DNA-binding domain of Proline dehydrogenase PRODH PF18327.1 AHV91033.1 - 1.7e-17 63.4 1.2 1.4e-16 60.5 1.2 2.8 1 0 0 1 1 1 1 Proline utilization A proline dehydrogenase N-terminal domain Aldedh PF00171.22 AHV91034.1 - 2.5e-104 349.4 0.3 2.8e-104 349.2 0.3 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family baeRF_family2 PF18844.1 AHV91034.1 - 0.029 14.4 3.5 0.048 13.7 0.9 2.1 2 0 0 2 2 2 0 Bacterial archaeo-eukaryotic release factor family 2 PSD4 PF07631.11 AHV91034.1 - 0.12 13.0 0.0 0.36 11.4 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1592) 3HCDH_N PF02737.18 AHV91036.1 - 7.9e-44 149.7 0.0 1.2e-43 149.1 0.0 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.22 AHV91036.1 - 1e-12 48.5 0.1 2.1e-12 47.5 0.1 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 2-Hacid_dh_C PF02826.19 AHV91036.1 - 5.6e-05 22.6 0.0 8.5e-05 22.0 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 AHV91036.1 - 0.0026 17.4 0.0 0.0036 16.9 0.0 1.2 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_2 PF03446.15 AHV91036.1 - 0.0084 16.3 0.1 0.016 15.4 0.1 1.6 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Hexapep PF00132.24 AHV91037.1 - 4e-29 99.2 32.9 4.1e-08 32.6 2.8 6.2 4 1 2 6 6 6 6 Bacterial transferase hexapeptide (six repeats) LpxD PF04613.14 AHV91037.1 - 5.5e-20 70.9 0.1 1e-19 70.1 0.1 1.4 1 0 0 1 1 1 1 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD Hexapep_2 PF14602.6 AHV91037.1 - 2.6e-13 49.5 30.5 0.0014 18.3 3.6 5.8 5 2 2 7 7 7 6 Hexapeptide repeat of succinyl-transferase OCD_Mu_crystall PF02423.15 AHV91038.1 - 1.9e-67 227.4 0.2 2.5e-67 227.1 0.2 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.20 AHV91038.1 - 4.7e-10 39.7 0.0 7.2e-10 39.1 0.0 1.2 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase 2-Hacid_dh_C PF02826.19 AHV91038.1 - 0.095 12.0 0.0 0.21 11.0 0.0 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HEAT_EZ PF13513.6 AHV91038.1 - 4 8.1 8.1 16 6.2 1.5 2.9 2 0 0 2 2 2 0 HEAT-like repeat Ribosomal_L4 PF00573.22 AHV91039.1 - 4.2e-61 206.0 0.1 4.7e-61 205.8 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Frataxin_Cyay PF01491.16 AHV91040.1 - 8.2e-21 74.1 0.0 9e-21 74.0 0.0 1.0 1 0 0 1 1 1 1 Frataxin-like domain ABC_tran PF00005.27 AHV91041.1 - 2.2e-11 44.4 0.0 3e-11 44.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.8 AHV91041.1 - 2.6e-07 30.4 0.0 4.3e-07 29.7 0.0 1.4 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter LYTB PF02401.18 AHV91042.1 - 3.5e-91 305.1 0.0 4e-91 304.9 0.0 1.0 1 0 0 1 1 1 1 LytB protein Vut_1 PF02592.15 AHV91043.1 - 2.3e-29 102.7 8.2 2.1e-20 73.6 1.9 2.4 2 1 1 3 3 3 2 Putative vitamin uptake transporter DUF4407 PF14362.6 AHV91043.1 - 0.33 10.3 0.1 0.33 10.3 0.1 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4407) PhoR PF11808.8 AHV91043.1 - 8.9 6.8 14.5 0.77 10.2 2.3 3.0 2 1 1 3 3 3 0 Phosphate regulon sensor protein PhoR AMP-binding_C PF13193.6 AHV91044.1 - 2.2e-21 76.6 0.1 2.6e-21 76.4 0.1 1.1 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Ribosomal_L18p PF00861.22 AHV91045.1 - 3.3e-35 121.0 2.1 3.7e-35 120.8 2.1 1.0 1 0 0 1 1 1 1 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast HEM4 PF02602.15 AHV91045.1 - 0.035 13.5 0.1 0.047 13.0 0.1 1.2 1 0 0 1 1 1 0 Uroporphyrinogen-III synthase HemD Aconitase_2_N PF06434.13 AHV91046.1 - 7.6e-95 316.3 0.0 1.1e-94 315.8 0.0 1.3 1 0 0 1 1 1 1 Aconitate hydratase 2 N-terminus Aconitase_B_N PF11791.8 AHV91046.1 - 7.8e-64 214.4 0.0 1.6e-63 213.3 0.0 1.6 1 0 0 1 1 1 1 Aconitate B N-terminal domain Aconitase PF00330.20 AHV91046.1 - 2.1e-41 142.4 0.0 1.3e-39 136.5 0.0 2.4 1 1 0 1 1 1 1 Aconitase family (aconitate hydratase) Ketoacyl-synt_C PF02801.22 AHV91046.1 - 0.055 13.5 0.0 0.11 12.5 0.0 1.5 1 0 0 1 1 1 0 Beta-ketoacyl synthase, C-terminal domain DDE_Tnp_ISL3 PF01610.17 AHV91048.1 - 6.7e-65 219.2 1.2 9.3e-65 218.7 0.3 1.6 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV91048.1 - 1.4e-11 43.6 0.1 3.6e-11 42.3 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV91048.1 - 5.3e-09 36.6 11.2 1.1e-08 35.6 11.2 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV91048.1 - 0.0056 16.7 0.2 0.016 15.3 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain NOB1_Zn_bind PF08772.11 AHV91048.1 - 0.017 15.2 0.2 1.2 9.3 0.0 2.5 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like SLT_L PF14718.6 AHV91048.1 - 0.023 14.8 1.3 0.023 14.8 1.3 1.8 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain zf-IS66 PF13005.7 AHV91048.1 - 8.2 6.9 9.6 3.6 8.1 6.6 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Ferrochelatase PF00762.19 AHV91049.1 - 1.5e-111 372.5 0.0 1.7e-111 372.3 0.0 1.0 1 0 0 1 1 1 1 Ferrochelatase CbiX PF01903.17 AHV91049.1 - 1.4e-09 38.3 0.0 0.0016 18.7 0.0 2.4 2 0 0 2 2 2 2 CbiX DUF2239 PF09998.9 AHV91050.1 - 5.9e-15 55.5 0.0 7.2e-15 55.3 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2239) RmlD_sub_bind PF04321.17 AHV91051.1 - 1.7e-89 299.7 0.0 2.1e-89 299.5 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.21 AHV91051.1 - 3.1e-19 69.4 0.0 3e-18 66.2 0.0 2.0 1 1 0 2 2 2 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 AHV91051.1 - 9.4e-11 41.7 0.0 2.5e-10 40.3 0.0 1.6 2 0 0 2 2 2 1 GDP-mannose 4,6 dehydratase NAD_binding_4 PF07993.12 AHV91051.1 - 0.0054 15.9 0.0 0.01 15.0 0.0 1.4 1 1 0 1 1 1 1 Male sterility protein Polysacc_synt_2 PF02719.15 AHV91051.1 - 0.029 13.5 0.0 0.24 10.5 0.0 2.2 3 0 0 3 3 3 0 Polysaccharide biosynthesis protein YdjC PF04794.12 AHV91052.1 - 3.2e-43 148.4 0.0 4.1e-43 148.0 0.0 1.1 1 0 0 1 1 1 1 YdjC-like protein DDE_Tnp_ISL3 PF01610.17 AHV91053.1 - 7.9e-65 218.9 1.2 1.1e-64 218.4 0.3 1.6 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV91053.1 - 1.4e-11 43.6 0.1 3.6e-11 42.3 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV91053.1 - 5.3e-09 36.6 11.2 1.1e-08 35.6 11.2 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV91053.1 - 0.0056 16.7 0.2 0.016 15.3 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain SLT_L PF14718.6 AHV91053.1 - 0.016 15.3 1.5 0.016 15.3 1.5 1.8 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain NOB1_Zn_bind PF08772.11 AHV91053.1 - 0.017 15.2 0.2 1.2 9.3 0.0 2.5 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-IS66 PF13005.7 AHV91053.1 - 8.2 6.9 9.6 3.6 8.1 6.6 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Glyoxalase_5 PF14696.6 AHV91054.1 - 9e-65 217.1 0.0 1.8e-64 216.1 0.0 1.5 1 0 0 1 1 1 1 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal Glyoxalase PF00903.25 AHV91054.1 - 1.7e-15 57.3 0.1 1.3e-12 48.0 0.0 2.3 2 0 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 AHV91054.1 - 5.2e-09 36.4 0.0 4.1e-05 23.8 0.0 2.5 2 0 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.6 AHV91054.1 - 0.0002 21.5 0.2 1.3 9.1 0.0 3.6 2 2 0 2 2 2 2 Glyoxalase-like domain Gmx_para_CXXCG PF09535.10 AHV91054.1 - 0.048 12.9 0.0 0.075 12.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (Gmx_para_CXXCG) Sulfatase PF00884.23 AHV91055.1 - 5.6e-22 78.5 0.0 7.5e-22 78.1 0.0 1.1 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 AHV91055.1 - 0.1 12.2 0.0 0.13 11.8 0.0 1.2 1 0 0 1 1 1 0 Type I phosphodiesterase / nucleotide pyrophosphatase DUF523 PF04463.12 AHV91056.1 - 4.7e-33 114.1 0.0 5.7e-33 113.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF523) FAD_binding_3 PF01494.19 AHV91058.1 - 1.1e-11 44.6 0.3 2e-11 43.8 0.3 1.3 1 1 0 1 1 1 1 FAD binding domain Lycopene_cycl PF05834.12 AHV91058.1 - 6.3e-06 25.5 0.3 0.042 12.9 0.0 2.2 2 0 0 2 2 2 2 Lycopene cyclase protein SE PF08491.10 AHV91058.1 - 0.016 14.2 0.0 0.024 13.7 0.0 1.2 1 0 0 1 1 1 0 Squalene epoxidase Molybdopterin PF00384.22 AHV91059.1 - 1.2e-28 100.2 0.0 2.8e-16 59.5 0.0 2.2 2 0 0 2 2 2 2 Molybdopterin oxidoreductase Fer2_4 PF13510.6 AHV91059.1 - 1.8e-20 72.8 0.7 5.4e-20 71.2 0.7 1.9 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain NADH-G_4Fe-4S_3 PF10588.9 AHV91059.1 - 2.2e-16 59.1 0.1 2.2e-16 59.1 0.1 1.9 2 0 0 2 2 2 1 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Molydop_binding PF01568.21 AHV91059.1 - 4.3e-09 36.4 0.1 9.5e-09 35.3 0.1 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Fer2 PF00111.27 AHV91059.1 - 6.7e-09 35.6 3.3 1e-08 35.0 0.1 2.4 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain TGS PF02824.21 AHV91059.1 - 0.12 12.5 0.0 0.52 10.4 0.0 2.1 1 1 1 2 2 2 0 TGS domain Fer4 PF00037.27 AHV91059.1 - 0.16 11.8 2.5 5.5 7.0 0.5 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Acyl-CoA_dh_1 PF00441.24 AHV91060.1 - 4.7e-26 91.8 2.9 1.3e-25 90.4 2.9 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_C PF12806.7 AHV91060.1 - 5.4e-24 84.7 4.6 5.4e-24 84.7 4.6 2.0 2 0 0 2 2 2 1 Acetyl-CoA dehydrogenase C-terminal like Acyl-CoA_dh_M PF02770.19 AHV91060.1 - 2.7e-16 59.5 0.0 9.3e-16 57.8 0.0 1.9 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_N PF02771.16 AHV91060.1 - 4.3e-12 46.7 0.0 1.4e-11 45.0 0.0 2.0 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain AcylCoA_DH_N PF12418.8 AHV91060.1 - 1.1e-11 44.6 0.0 7.1e-11 41.9 0.0 2.2 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase N terminal Acyl-CoA_dh_2 PF08028.11 AHV91060.1 - 8.3e-08 32.6 3.9 8.3e-08 32.6 3.9 2.0 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain EAL PF00563.20 AHV91061.1 - 0.0049 16.4 0.0 0.0086 15.6 0.0 1.3 1 0 0 1 1 1 1 EAL domain Dus PF01207.17 AHV91062.1 - 2.1e-85 286.6 0.0 2.5e-85 286.3 0.0 1.0 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) His_biosynth PF00977.21 AHV91062.1 - 7.9e-05 22.2 0.1 0.023 14.1 0.0 1.7 1 1 1 2 2 2 2 Histidine biosynthesis protein NanE PF04131.14 AHV91062.1 - 8e-05 21.9 0.1 0.00027 20.2 0.0 1.7 2 0 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase IMPDH PF00478.25 AHV91062.1 - 0.026 13.5 0.2 0.041 12.9 0.2 1.2 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain MR_MLE_C PF13378.6 AHV91062.1 - 0.034 13.7 0.3 0.22 11.1 0.3 2.1 1 1 0 1 1 1 0 Enolase C-terminal domain-like ThiG PF05690.14 AHV91062.1 - 0.18 11.1 1.9 0.19 11.0 0.2 1.9 2 1 1 3 3 3 0 Thiazole biosynthesis protein ThiG LysR_substrate PF03466.20 AHV91063.1 - 2e-37 128.6 5.1 2.8e-37 128.1 5.1 1.2 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 AHV91063.1 - 7.7e-23 80.2 2.9 9.7e-23 79.9 0.3 2.2 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family SBP_bac_11 PF13531.6 AHV91063.1 - 0.07 12.9 0.7 0.23 11.2 0.2 2.2 2 1 0 2 2 2 0 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 AHV91063.1 - 0.24 11.3 0.0 0.34 10.8 0.0 1.2 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein SMC_N PF02463.19 AHV91064.1 - 1.4e-64 217.6 0.0 2.1e-64 217.0 0.0 1.3 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 AHV91064.1 - 2.8e-13 50.3 0.2 4.3e-05 23.5 0.1 3.0 2 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 AHV91064.1 - 7.7e-10 39.6 18.1 7.7e-10 39.6 18.1 6.0 2 2 0 2 2 2 1 AAA domain AAA_15 PF13175.6 AHV91064.1 - 1.3e-07 31.6 0.0 4.3e-06 26.7 0.0 2.7 2 1 0 2 2 2 1 AAA ATPase domain SMC_hinge PF06470.13 AHV91064.1 - 4.5e-07 30.2 0.0 3.6e-06 27.3 0.0 2.6 2 1 0 2 2 2 1 SMC proteins Flexible Hinge Domain AAA_29 PF13555.6 AHV91064.1 - 0.00026 20.6 0.0 0.0006 19.5 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.27 AHV91064.1 - 0.0043 17.6 0.1 0.0043 17.6 0.1 5.2 2 2 0 3 3 3 1 ABC transporter LURAP PF14854.6 AHV91064.1 - 0.68 9.9 5.0 26 4.8 0.1 4.1 3 0 0 3 3 3 0 Leucine rich adaptor protein FecR PF04773.13 AHV91065.1 - 1.9e-14 54.0 0.1 2.6e-14 53.6 0.1 1.2 1 0 0 1 1 1 1 FecR protein Flavodoxin_1 PF00258.25 AHV91066.1 - 0.24 11.6 0.1 0.9 9.7 0.1 1.9 1 1 0 1 1 1 0 Flavodoxin DUF3426 PF11906.8 AHV91067.1 - 1.8e-43 148.2 0.2 2.6e-43 147.7 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3426) zinc_ribbon_5 PF13719.6 AHV91067.1 - 8.2e-12 44.7 1.1 1.2e-11 44.1 1.1 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_4 PF13717.6 AHV91067.1 - 7.6e-08 32.2 1.0 1.3e-07 31.4 1.0 1.4 1 0 0 1 1 1 1 zinc-ribbon domain Fmp27 PF10344.9 AHV91067.1 - 0.4 8.7 0.0 0.51 8.4 0.0 1.0 1 0 0 1 1 1 0 Mitochondrial protein from FMP27 HATPase_c PF02518.26 AHV91068.1 - 5.3e-17 62.3 0.0 9.5e-17 61.5 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 AHV91068.1 - 1.1e-13 51.0 0.3 4.1e-13 49.2 0.3 2.0 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS PF00989.25 AHV91068.1 - 4.6e-07 29.8 0.0 1.3e-06 28.3 0.0 1.8 1 1 0 1 1 1 1 PAS fold PAS_9 PF13426.7 AHV91068.1 - 7.4e-07 29.4 0.0 2e-06 28.0 0.0 1.7 2 0 0 2 2 2 1 PAS domain PAS_4 PF08448.10 AHV91068.1 - 1.7e-06 28.2 0.2 1.1e-05 25.6 0.0 2.3 2 0 0 2 2 2 1 PAS fold PAS_8 PF13188.7 AHV91068.1 - 4.8e-05 23.3 0.0 0.00015 21.7 0.0 1.8 1 0 0 1 1 1 1 PAS domain AlaDh_PNT_C PF01262.21 AHV91068.1 - 0.16 11.2 0.0 0.27 10.5 0.0 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain AMP-binding PF00501.28 AHV91069.1 - 2.6e-05 23.0 0.0 2.7e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 AMP-binding enzyme Ribosomal_L9_N PF01281.19 AHV91069.1 - 0.03 13.9 0.2 0.78 9.3 0.3 2.3 2 0 0 2 2 2 0 Ribosomal protein L9, N-terminal domain GH3 PF03321.13 AHV91069.1 - 0.044 12.6 0.0 0.059 12.2 0.0 1.1 1 0 0 1 1 1 0 GH3 auxin-responsive promoter BPD_transp_1 PF00528.22 AHV91070.1 - 1.9e-20 73.4 10.8 2.7e-20 72.9 10.8 1.2 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component FtsX PF02687.21 AHV91070.1 - 1.5 9.4 16.6 0.058 13.9 2.9 3.0 1 1 1 2 2 2 0 FtsX-like permease family Lipase_GDSL_2 PF13472.6 AHV91072.1 - 1.3e-18 68.0 0.0 1.4e-18 67.9 0.0 1.0 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family Lipase_GDSL PF00657.22 AHV91072.1 - 0.0009 19.3 0.0 0.0011 19.0 0.0 1.1 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase OSK PF17182.4 AHV91072.1 - 0.18 11.0 0.0 0.2 10.9 0.0 1.1 1 0 0 1 1 1 0 OSK domain FMN_dh PF01070.18 AHV91073.1 - 3.3e-131 437.5 0.2 4e-131 437.2 0.2 1.0 1 0 0 1 1 1 1 FMN-dependent dehydrogenase IMPDH PF00478.25 AHV91073.1 - 4.4e-05 22.7 0.5 7.6e-05 21.9 0.5 1.5 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain NMO PF03060.15 AHV91073.1 - 0.0034 16.8 4.8 0.0034 16.8 4.8 2.2 2 1 0 2 2 2 1 Nitronate monooxygenase Glu_synthase PF01645.17 AHV91073.1 - 0.0081 15.3 0.2 0.019 14.1 0.2 1.5 1 0 0 1 1 1 1 Conserved region in glutamate synthase His_biosynth PF00977.21 AHV91073.1 - 0.012 15.0 0.0 0.054 12.9 0.0 2.0 2 0 0 2 2 2 0 Histidine biosynthesis protein ThiG PF05690.14 AHV91073.1 - 0.016 14.6 0.1 0.4 10.0 0.0 2.3 1 1 1 2 2 2 0 Thiazole biosynthesis protein ThiG Glyco_transf_4 PF13439.6 AHV91073.1 - 0.11 12.6 0.0 0.34 10.9 0.0 1.9 1 0 0 1 1 1 0 Glycosyltransferase Family 4 HTH_18 PF12833.7 AHV91074.1 - 1.7e-06 28.2 0.0 1.9e-06 28.0 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 AHV91074.1 - 0.024 14.7 0.0 0.026 14.6 0.0 1.1 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family rve_3 PF13683.6 AHV91075.1 - 8.3e-32 108.8 0.1 4.5e-31 106.4 0.0 2.2 2 0 0 2 2 2 1 Integrase core domain rve PF00665.26 AHV91075.1 - 4.2e-25 88.2 0.0 1.1e-23 83.7 0.0 2.2 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 AHV91075.1 - 1.8e-11 44.0 8.6 3.6e-11 43.0 8.6 1.5 1 0 0 1 1 1 1 HTH-like domain rve_2 PF13333.6 AHV91075.1 - 5.8e-07 29.6 0.0 1.3e-06 28.5 0.0 1.6 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AHV91075.1 - 0.00041 20.6 0.0 0.00091 19.5 0.0 1.6 1 1 1 2 2 2 1 DDE domain Rhomboid_SP PF12595.8 AHV91075.1 - 0.0081 15.6 0.3 2.2 7.6 0.0 2.3 1 1 0 2 2 2 2 Rhomboid serine protease DUF1780 PF08682.10 AHV91075.1 - 0.13 11.9 1.0 1.6 8.3 0.3 2.2 2 0 0 2 2 2 0 Putative endonuclease, protein of unknown function (DUF1780) DDE_Tnp_ISL3 PF01610.17 AHV91076.1 - 7.9e-65 218.9 1.2 1.1e-64 218.4 0.3 1.6 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV91076.1 - 1.4e-11 43.6 0.1 3.6e-11 42.3 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV91076.1 - 5.3e-09 36.6 11.2 1.1e-08 35.6 11.2 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV91076.1 - 0.0056 16.7 0.2 0.016 15.3 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain SLT_L PF14718.6 AHV91076.1 - 0.016 15.3 1.5 0.016 15.3 1.5 1.8 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain NOB1_Zn_bind PF08772.11 AHV91076.1 - 0.017 15.2 0.2 1.2 9.3 0.0 2.5 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-IS66 PF13005.7 AHV91076.1 - 8.2 6.9 9.6 3.6 8.1 6.6 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Iron_traffic PF04362.14 AHV91077.1 - 3.4e-41 138.8 0.0 3.7e-41 138.7 0.0 1.0 1 0 0 1 1 1 1 Bacterial Fe(2+) trafficking TagF_N PF09867.9 AHV91077.1 - 0.031 14.3 0.1 0.036 14.1 0.1 1.1 1 0 0 1 1 1 0 TagF N-terminal domain, Type VI secretion system-associated IGR PF09597.10 AHV91077.1 - 0.06 13.5 1.1 0.092 12.9 1.1 1.3 1 0 0 1 1 1 0 IGR protein motif UDG PF03167.19 AHV91078.1 - 9.4e-20 71.2 0.0 1.4e-19 70.6 0.0 1.2 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily Peripla_BP_6 PF13458.6 AHV91079.1 - 6.3e-85 285.8 13.7 7.6e-85 285.6 13.7 1.0 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 AHV91079.1 - 2.3e-18 66.4 0.8 1.1e-17 64.1 0.8 1.9 1 1 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.28 AHV91079.1 - 9.3e-11 41.4 0.1 1.2e-10 41.0 0.1 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region NifU_N PF01592.16 AHV91080.1 - 2.7e-56 189.2 0.2 3e-56 189.1 0.2 1.0 1 0 0 1 1 1 1 NifU-like N terminal domain BPD_transp_1 PF00528.22 AHV91081.1 - 3.2e-27 95.5 19.7 3.2e-27 95.5 19.7 2.1 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF2207 PF09972.9 AHV91081.1 - 4.6 5.9 7.6 11 4.6 7.6 1.8 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) Cu-oxidase_4 PF02578.15 AHV91082.1 - 4.2e-29 101.8 0.0 4.6e-29 101.7 0.0 1.0 1 0 0 1 1 1 1 Multi-copper polyphenol oxidoreductase laccase LMWPc PF01451.21 AHV91083.1 - 4.1e-29 101.8 0.0 4.6e-29 101.6 0.0 1.0 1 0 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase DUF192 PF02643.15 AHV91084.1 - 6.7e-33 112.7 0.0 8.7e-33 112.4 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 IclR PF01614.18 AHV91085.1 - 9.6e-17 61.0 0.5 6.7e-16 58.3 0.2 2.0 1 1 1 2 2 2 1 Bacterial transcriptional regulator DNA_gyraseB PF00204.25 AHV91086.1 - 2.1e-58 196.7 0.0 3.4e-58 196.0 0.0 1.4 1 0 0 1 1 1 1 DNA gyrase B GyrB_insert PF18053.1 AHV91086.1 - 6.4e-49 166.0 0.2 1.4e-48 165.0 0.1 1.6 2 0 0 2 2 2 1 DNA gyrase B subunit insert domain DNA_gyraseB_C PF00986.21 AHV91086.1 - 8e-30 102.8 0.2 1.6e-29 101.9 0.2 1.5 1 0 0 1 1 1 1 DNA gyrase B subunit, carboxyl terminus HATPase_c PF02518.26 AHV91086.1 - 1.2e-23 83.7 0.2 3.6e-23 82.2 0.2 1.9 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Toprim PF01751.22 AHV91086.1 - 4.7e-18 65.3 0.0 1.7e-17 63.5 0.0 2.0 2 0 0 2 2 2 1 Toprim domain HATPase_c_3 PF13589.6 AHV91086.1 - 0.00057 19.7 0.4 0.0013 18.6 0.1 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMO PF03060.15 AHV91087.1 - 1.8e-46 159.1 1.1 2.3e-46 158.7 1.1 1.0 1 0 0 1 1 1 1 Nitronate monooxygenase IMPDH PF00478.25 AHV91087.1 - 4.3e-05 22.7 0.1 9.8e-05 21.5 0.0 1.5 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain DUF561 PF04481.12 AHV91087.1 - 0.032 13.4 0.1 0.082 12.1 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF561) PEP_hydrolase PF09370.10 AHV91087.1 - 0.076 12.2 0.0 0.13 11.5 0.0 1.3 1 0 0 1 1 1 0 Phosphoenolpyruvate hydrolase-like NanE PF04131.14 AHV91087.1 - 0.3 10.3 2.4 0.89 8.7 0.0 2.1 2 0 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase Acetyltransf_6 PF13480.7 AHV91087.1 - 0.55 10.4 3.8 3.2 7.9 0.2 2.4 2 1 0 2 2 2 0 Acetyltransferase (GNAT) domain FMN_dh PF01070.18 AHV91087.1 - 1.9 7.4 5.4 5.6 5.9 0.5 2.2 2 0 0 2 2 2 0 FMN-dependent dehydrogenase DUF442 PF04273.13 AHV91088.1 - 4.9e-33 113.5 0.4 5.4e-33 113.4 0.4 1.0 1 0 0 1 1 1 1 Putative phosphatase (DUF442) TonB_dep_Rec PF00593.24 AHV91089.1 - 4.8e-58 198.2 38.9 4.8e-58 198.2 38.9 2.1 1 1 1 2 2 2 1 TonB dependent receptor Plug PF07715.15 AHV91089.1 - 2.5e-26 92.4 0.9 2.5e-26 92.4 0.9 2.1 2 0 0 2 2 2 1 TonB-dependent Receptor Plug Domain Ribosomal_L35p PF01632.19 AHV91091.1 - 2.2e-25 88.9 9.7 2.4e-25 88.8 9.7 1.0 1 0 0 1 1 1 1 Ribosomal protein L35 BPD_transp_1 PF00528.22 AHV91093.1 - 2.1e-23 83.0 33.6 1.8e-14 53.9 11.2 3.5 2 1 2 4 4 4 3 Binding-protein-dependent transport system inner membrane component UDG PF03167.19 AHV91094.1 - 0.0027 17.7 0.0 0.0034 17.4 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily SoPB_HTH PF18090.1 AHV91094.1 - 0.13 12.4 0.3 0.26 11.5 0.0 1.6 2 0 0 2 2 2 0 Centromere-binding protein HTH domain PTPS PF01242.19 AHV91095.1 - 5.9e-28 97.3 0.0 7.3e-28 97.0 0.0 1.1 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase Response_reg PF00072.24 AHV91096.1 - 3.4e-20 72.3 0.0 4.6e-20 71.8 0.0 1.2 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 AHV91096.1 - 4.3e-20 71.6 0.2 8.9e-20 70.6 0.2 1.5 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal DDRGK PF09756.9 AHV91096.1 - 0.064 12.8 0.0 0.091 12.3 0.0 1.1 1 0 0 1 1 1 0 DDRGK domain DDE_Tnp_ISL3 PF01610.17 AHV91097.1 - 7.9e-65 218.9 1.2 1.1e-64 218.4 0.3 1.6 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV91097.1 - 1.4e-11 43.6 0.1 3.6e-11 42.3 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV91097.1 - 5.3e-09 36.6 11.2 1.1e-08 35.6 11.2 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV91097.1 - 0.0056 16.7 0.2 0.016 15.3 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain SLT_L PF14718.6 AHV91097.1 - 0.016 15.3 1.5 0.016 15.3 1.5 1.8 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain NOB1_Zn_bind PF08772.11 AHV91097.1 - 0.017 15.2 0.2 1.2 9.3 0.0 2.5 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-IS66 PF13005.7 AHV91097.1 - 8.2 6.9 9.6 3.6 8.1 6.6 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Peripla_BP_6 PF13458.6 AHV91098.1 - 1.8e-43 149.5 6.5 2e-43 149.4 6.5 1.0 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.28 AHV91098.1 - 9.7e-13 47.9 0.0 4.3e-12 45.8 0.0 1.7 2 0 0 2 2 2 1 Receptor family ligand binding region Peripla_BP_3 PF13377.6 AHV91098.1 - 0.00074 19.9 0.0 0.0016 18.8 0.0 1.6 1 0 0 1 1 1 1 Periplasmic binding protein-like domain Acyl-CoA_dh_C PF12806.7 AHV91098.1 - 0.019 15.1 0.2 0.043 14.0 0.2 1.6 1 0 0 1 1 1 0 Acetyl-CoA dehydrogenase C-terminal like Peripla_BP_4 PF13407.6 AHV91098.1 - 0.024 14.2 2.4 4.6 6.7 0.1 2.5 1 1 0 2 2 2 0 Periplasmic binding protein domain Peripla_BP_5 PF13433.6 AHV91098.1 - 0.077 12.0 0.0 7.9 5.3 0.0 2.4 3 0 0 3 3 3 0 Periplasmic binding protein domain Asp_Glu_race PF01177.22 AHV91098.1 - 0.13 12.1 0.2 0.27 11.1 0.2 1.5 1 1 0 1 1 1 0 Asp/Glu/Hydantoin racemase Gln-synt_C PF00120.24 AHV91099.1 - 4e-137 456.8 0.0 4.6e-137 456.6 0.0 1.0 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 AHV91099.1 - 3.6e-18 65.1 0.0 7.8e-18 64.0 0.0 1.6 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain rve PF00665.26 AHV91101.1 - 7e-21 74.6 0.3 2.3e-20 73.0 0.0 1.7 2 0 0 2 2 2 1 Integrase core domain rve_3 PF13683.6 AHV91101.1 - 9.8e-20 70.1 2.7 1.4e-19 69.6 2.7 1.2 1 0 0 1 1 1 1 Integrase core domain PG_binding_2 PF08823.11 AHV91101.1 - 0.019 15.3 0.0 0.027 14.8 0.0 1.3 1 0 0 1 1 1 0 Putative peptidoglycan binding domain DDE_Tnp_1_2 PF13586.6 AHV91101.1 - 0.093 13.1 0.4 0.22 11.9 0.1 1.8 1 1 1 2 2 2 0 Transposase DDE domain FAA_hydrolase PF01557.18 AHV91102.1 - 9.4e-53 179.1 0.0 1.1e-52 178.9 0.0 1.0 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family rve_3 PF13683.6 AHV91103.1 - 4e-26 90.6 0.1 4.7e-26 90.3 0.1 1.1 1 0 0 1 1 1 1 Integrase core domain rve_2 PF13333.6 AHV91103.1 - 5.8e-08 32.8 0.0 7.4e-08 32.5 0.0 1.1 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AHV91103.1 - 0.003 17.8 0.0 0.0035 17.6 0.0 1.1 1 0 0 1 1 1 1 DDE domain FCD PF07729.12 AHV91104.1 - 1.1e-21 77.5 6.7 2.4e-21 76.5 6.7 1.5 1 0 0 1 1 1 1 FCD domain GntR PF00392.21 AHV91104.1 - 7.1e-14 51.2 0.1 1.3e-13 50.4 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_24 PF13412.6 AHV91104.1 - 0.0028 17.2 0.0 0.049 13.2 0.0 2.5 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding Fe_dep_repress PF01325.19 AHV91104.1 - 0.034 14.3 0.0 0.058 13.6 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.7 AHV91104.1 - 0.05 13.5 0.7 3 7.8 0.1 2.6 2 0 0 2 2 2 0 MarR family PaaX PF07848.12 AHV91104.1 - 0.055 13.7 0.4 0.64 10.3 0.1 2.4 2 0 0 2 2 2 0 PaaX-like protein HTH_AsnC-type PF13404.6 AHV91104.1 - 0.073 12.9 0.2 0.073 12.9 0.2 2.9 4 0 0 4 4 4 0 AsnC-type helix-turn-helix domain DUF2555 PF10742.9 AHV91104.1 - 0.079 12.8 0.1 0.22 11.4 0.1 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2555) ZT_dimer PF16916.5 AHV91104.1 - 0.15 12.2 0.4 25 5.1 0.1 2.5 1 1 1 2 2 2 0 Dimerisation domain of Zinc Transporter PepSY_TM_like_2 PF16357.5 AHV91105.1 - 6.8e-84 280.8 0.8 7.7e-84 280.6 0.8 1.0 1 0 0 1 1 1 1 Putative PepSY_TM-like PepSY_TM PF03929.16 AHV91105.1 - 5.9e-12 45.8 1.0 8.1e-12 45.4 1.0 1.2 1 0 0 1 1 1 1 PepSY-associated TM region Sdh_cyt PF01127.22 AHV91105.1 - 0.078 13.0 0.3 0.078 13.0 0.3 2.2 2 0 0 2 2 2 0 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CCB1 PF12046.8 AHV91106.1 - 0.079 12.3 0.0 0.085 12.2 0.0 1.1 1 0 0 1 1 1 0 Cofactor assembly of complex C subunit B Cytochrom_C PF00034.21 AHV91107.1 - 5.1e-12 46.8 0.1 3.4e-05 24.9 0.2 2.8 2 1 0 2 2 2 2 Cytochrome c Cytochrome_CBB3 PF13442.6 AHV91107.1 - 1.3e-11 44.7 0.2 7.5e-05 23.0 0.0 2.2 2 0 0 2 2 2 2 Cytochrome C oxidase, cbb3-type, subunit III DUF1924 PF09086.11 AHV91107.1 - 0.023 15.0 0.4 9.7 6.6 0.0 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF1924) NicO PF03824.16 AHV91107.1 - 0.03 13.7 0.0 0.074 12.4 0.0 1.6 2 0 0 2 2 2 0 High-affinity nickel-transport protein Paired_CXXCH_1 PF09699.10 AHV91107.1 - 0.035 13.8 0.3 3.4 7.5 0.0 2.4 2 0 0 2 2 2 0 Doubled CXXCH motif (Paired_CXXCH_1) CCP_MauG PF03150.14 AHV91107.1 - 0.065 13.9 0.0 1.5 9.4 0.0 2.1 2 0 0 2 2 2 0 Di-haem cytochrome c peroxidase Cytochrome_C7 PF14522.6 AHV91107.1 - 0.071 13.1 0.0 12 6.0 0.0 2.3 2 0 0 2 2 2 0 Cytochrome c7 and related cytochrome c Enterotoxin_HS1 PF08090.11 AHV91107.1 - 1.5 8.8 7.3 3.2 7.8 0.3 2.7 2 0 0 2 2 2 0 Heat stable E.coli enterotoxin 1 POR PF01558.18 AHV91108.1 - 3.9e-08 33.6 0.1 6.9e-08 32.8 0.1 1.4 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.21 AHV91108.1 - 7.2e-05 22.6 0.2 0.00017 21.4 0.2 1.7 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Transketolase_C PF02780.20 AHV91108.1 - 0.0089 15.9 0.0 0.027 14.4 0.0 1.8 2 0 0 2 2 2 1 Transketolase, C-terminal domain NAD_binding_1 PF00175.21 AHV91109.1 - 9.2e-17 61.7 0.0 1.5e-16 61.0 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain Fer2 PF00111.27 AHV91109.1 - 2.9e-16 59.2 0.3 5.3e-16 58.3 0.3 1.4 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain FAD_binding_6 PF00970.24 AHV91109.1 - 4.9e-12 46.1 0.0 1e-11 45.0 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain NAD_binding_6 PF08030.12 AHV91109.1 - 0.006 16.7 0.0 0.14 12.3 0.0 2.2 1 1 1 2 2 2 1 Ferric reductase NAD binding domain Fer2_4 PF13510.6 AHV91109.1 - 0.11 12.5 0.2 0.26 11.4 0.2 1.6 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain HemX PF04375.14 AHV91110.1 - 8.2e-45 153.5 12.1 1.3e-44 152.9 12.1 1.1 1 0 0 1 1 1 1 HemX, putative uroporphyrinogen-III C-methyltransferase PilX_N PF14341.6 AHV91110.1 - 0.45 10.5 5.3 11 6.0 0.7 2.7 2 0 0 2 2 2 0 PilX N-terminal DUF1843 PF08898.10 AHV91110.1 - 0.65 10.5 4.6 15 6.1 0.1 3.4 4 0 0 4 4 4 0 Domain of unknown function (DUF1843) SNARE PF05739.19 AHV91110.1 - 5.3 7.1 6.0 0.96 9.5 0.1 2.8 4 0 0 4 4 4 0 SNARE domain DegT_DnrJ_EryC1 PF01041.17 AHV91111.1 - 3.8e-67 227.1 0.0 4.6e-67 226.9 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 AHV91111.1 - 0.039 13.2 0.0 0.045 13.0 0.0 1.2 1 0 0 1 1 1 0 Beta-eliminating lyase Hydrolase PF00702.26 AHV91111.1 - 0.061 13.6 0.0 0.085 13.1 0.0 1.2 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase ABC_tran PF00005.27 AHV91112.1 - 9e-28 97.5 0.0 1.5e-27 96.8 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 AHV91112.1 - 5e-08 33.1 0.0 0.007 16.2 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 AHV91112.1 - 3.5e-06 27.3 0.0 7.4e-06 26.3 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 AHV91112.1 - 0.00018 21.9 0.0 0.00052 20.5 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 AHV91112.1 - 0.0034 17.3 0.0 0.006 16.5 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase SMC_N PF02463.19 AHV91112.1 - 0.0079 15.6 0.0 1 8.8 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain NACHT PF05729.12 AHV91112.1 - 0.01 15.8 0.5 0.023 14.6 0.1 1.7 2 0 0 2 2 2 0 NACHT domain SbcCD_C PF13558.6 AHV91112.1 - 0.011 15.9 0.1 0.58 10.4 0.1 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit MMR_HSR1 PF01926.23 AHV91112.1 - 0.03 14.4 0.0 0.077 13.1 0.0 1.6 2 0 0 2 2 2 0 50S ribosome-binding GTPase NB-ARC PF00931.22 AHV91112.1 - 0.048 12.8 0.1 0.1 11.8 0.1 1.4 2 0 0 2 2 2 0 NB-ARC domain AAA_30 PF13604.6 AHV91112.1 - 0.053 13.2 0.0 0.12 12.1 0.0 1.8 1 1 1 2 2 2 0 AAA domain TsaE PF02367.17 AHV91112.1 - 0.084 12.9 0.3 0.15 12.1 0.3 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_24 PF13479.6 AHV91112.1 - 0.13 11.9 0.0 0.54 9.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 AHV91112.1 - 0.15 12.2 0.1 0.2 11.8 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 AHV91112.1 - 0.17 11.6 0.1 0.39 10.5 0.1 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_14 PF13173.6 AHV91112.1 - 0.21 11.7 0.1 1.2 9.2 0.1 2.0 2 0 0 2 2 2 0 AAA domain MobB PF03205.14 AHV91112.1 - 0.22 11.4 0.0 0.4 10.6 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B rve PF00665.26 AHV91113.1 - 2.9e-32 111.3 0.7 4.3e-32 110.8 0.1 1.6 2 0 0 2 2 1 1 Integrase core domain LZ_Tnp_IS481 PF13011.6 AHV91113.1 - 7.7e-22 77.6 2.7 1.1e-19 70.7 0.4 2.6 1 1 1 2 2 2 1 leucine-zipper of insertion element IS481 rve_3 PF13683.6 AHV91113.1 - 5e-19 67.8 2.7 1.2e-18 66.6 2.7 1.7 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.6 AHV91113.1 - 6.1e-17 60.9 4.4 1.2e-07 31.3 0.1 2.7 2 0 0 2 2 2 2 Homeodomain-like domain HTH_28 PF13518.6 AHV91113.1 - 1.5e-15 57.1 6.5 5.9e-11 42.3 0.1 3.4 4 0 0 4 4 3 2 Helix-turn-helix domain HTH_29 PF13551.6 AHV91113.1 - 9.8e-12 44.7 0.6 2.6e-06 27.4 0.0 2.6 2 0 0 2 2 2 2 Winged helix-turn helix HTH_32 PF13565.6 AHV91113.1 - 9.4e-11 42.2 0.7 9.4e-11 42.2 0.7 2.4 2 1 0 2 2 2 1 Homeodomain-like domain HTH_38 PF13936.6 AHV91113.1 - 1.5e-06 27.9 0.6 5.1e-06 26.1 0.5 2.1 2 0 0 2 2 1 1 Helix-turn-helix domain MarR_2 PF12802.7 AHV91113.1 - 8e-06 25.6 3.1 9.5e-05 22.2 1.2 2.6 2 0 0 2 2 2 1 MarR family HTH_31 PF13560.6 AHV91113.1 - 1.4e-05 25.4 1.7 0.00059 20.1 0.4 3.2 3 0 0 3 3 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 AHV91113.1 - 3e-05 23.6 0.1 0.0064 16.1 0.3 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 AHV91113.1 - 4.6e-05 22.9 0.1 0.00056 19.4 0.2 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 YdaS_antitoxin PF15943.5 AHV91113.1 - 0.00022 21.0 0.2 0.24 11.3 0.0 2.8 2 0 0 2 2 2 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_Tnp_ISL3 PF13542.6 AHV91113.1 - 0.00023 20.5 8.5 0.002 17.5 0.6 3.9 4 0 0 4 4 3 1 Helix-turn-helix domain of transposase family ISL3 HTH_24 PF13412.6 AHV91113.1 - 0.00028 20.4 0.2 0.0021 17.6 0.3 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_3 PF01381.22 AHV91113.1 - 0.00032 20.7 0.7 0.013 15.5 0.3 2.5 2 0 0 2 2 2 1 Helix-turn-helix HTH_Crp_2 PF13545.6 AHV91113.1 - 0.0004 20.3 0.3 0.0027 17.6 0.2 2.3 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain Trp_repressor PF01371.19 AHV91113.1 - 0.00081 19.5 0.2 0.006 16.7 0.1 2.2 2 0 0 2 2 2 1 Trp repressor protein CENP-B_N PF04218.13 AHV91113.1 - 0.0016 18.0 0.0 1.6 8.5 0.1 2.3 2 0 0 2 2 2 1 CENP-B N-terminal DNA-binding domain LacI PF00356.21 AHV91113.1 - 0.0017 18.1 1.8 0.0046 16.7 0.7 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family Fe_dep_repress PF01325.19 AHV91113.1 - 0.002 18.3 0.0 0.034 14.4 0.1 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.20 AHV91113.1 - 0.0023 17.8 0.0 0.93 9.4 0.0 2.5 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 AHV91113.1 - 0.0025 17.6 1.3 0.035 13.9 0.7 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_psq PF05225.16 AHV91113.1 - 0.0025 17.5 0.7 2.3 8.0 0.4 2.9 3 0 0 3 3 3 1 helix-turn-helix, Psq domain HTH_11 PF08279.12 AHV91113.1 - 0.0026 17.7 0.4 0.015 15.3 0.5 2.2 2 0 0 2 2 2 1 HTH domain SpoIIID PF12116.8 AHV91113.1 - 0.0026 17.8 0.0 1.1 9.4 0.0 2.4 2 0 0 2 2 2 1 Stage III sporulation protein D HTH_AsnC-type PF13404.6 AHV91113.1 - 0.0036 17.1 2.7 0.045 13.6 1.1 2.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain RepB PF07506.11 AHV91113.1 - 0.0042 17.2 0.1 0.55 10.3 0.1 2.3 1 1 1 2 2 2 1 RepB plasmid partitioning protein HTH_17 PF12728.7 AHV91113.1 - 0.0043 17.2 0.7 6.1 7.1 0.0 3.3 3 1 0 3 3 3 0 Helix-turn-helix domain HTH_Tnp_1 PF01527.20 AHV91113.1 - 0.005 17.1 0.5 0.11 12.8 0.0 2.7 1 1 1 2 2 2 1 Transposase GntR PF00392.21 AHV91113.1 - 0.0053 16.4 0.8 0.5 10.1 0.3 2.5 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_10 PF04967.12 AHV91113.1 - 0.0077 16.0 0.1 0.049 13.4 0.2 2.2 2 0 0 2 2 2 1 HTH DNA binding domain HTH_35 PF13693.6 AHV91113.1 - 0.0093 16.0 1.5 0.073 13.1 0.6 2.7 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding UPF0175 PF03683.13 AHV91113.1 - 0.014 15.1 0.4 0.1 12.3 0.1 2.4 2 1 0 2 2 2 0 Uncharacterised protein family (UPF0175) HTH_30 PF13556.6 AHV91113.1 - 0.015 15.1 0.1 2 8.3 0.0 2.6 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain HTH_37 PF13744.6 AHV91113.1 - 0.016 15.2 0.1 0.13 12.3 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Tnp_4 PF13613.6 AHV91113.1 - 0.016 14.9 0.1 0.067 12.9 0.0 2.0 2 0 0 2 2 1 0 Helix-turn-helix of DDE superfamily endonuclease HTH_36 PF13730.6 AHV91113.1 - 0.02 14.8 0.1 0.58 10.2 0.0 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain KORA PF16509.5 AHV91113.1 - 0.034 14.4 0.1 3.6 8.0 0.0 3.0 3 0 0 3 3 3 0 TrfB plasmid transcriptional repressor MarR PF01047.22 AHV91113.1 - 0.045 13.7 0.1 0.14 12.1 0.1 1.8 2 0 0 2 2 1 0 MarR family DDE_Tnp_IS240 PF13610.6 AHV91113.1 - 0.048 13.9 0.1 0.071 13.3 0.1 1.3 1 0 0 1 1 1 0 DDE domain Crp PF00325.20 AHV91113.1 - 0.05 13.3 3.2 0.062 13.0 0.5 2.5 3 0 0 3 3 3 0 Bacterial regulatory proteins, crp family P22_Cro PF14549.6 AHV91113.1 - 0.051 13.4 1.6 9.6 6.1 0.1 2.5 2 0 0 2 2 2 0 DNA-binding transcriptional regulator Cro DUF746 PF05344.11 AHV91113.1 - 0.085 12.7 0.1 0.98 9.3 0.0 2.3 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) HTH_1 PF00126.27 AHV91113.1 - 0.1 12.5 2.8 4.7 7.2 0.5 2.6 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_26 PF13443.6 AHV91113.1 - 0.17 12.3 0.0 3.6 8.1 0.1 2.8 3 0 0 3 3 3 0 Cro/C1-type HTH DNA-binding domain HTH_8 PF02954.19 AHV91113.1 - 0.19 11.5 0.9 14 5.5 0.7 2.7 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family HTH_Tnp_Tc3_2 PF01498.18 AHV91113.1 - 0.27 11.5 2.6 0.47 10.7 0.1 2.6 3 0 0 3 3 1 0 Transposase HTH_33 PF13592.6 AHV91113.1 - 0.56 9.9 3.1 2.9 7.6 0.1 3.4 4 0 0 4 4 2 0 Winged helix-turn helix MerR PF00376.23 AHV91113.1 - 0.72 9.7 6.8 3.2 7.6 0.0 3.6 4 0 0 4 4 2 0 MerR family regulatory protein eIF-1a PF01176.19 AHV91114.1 - 0.19 11.6 0.0 0.35 10.7 0.0 1.4 1 0 0 1 1 1 0 Translation initiation factor 1A / IF-1 dTDP_sugar_isom PF00908.17 AHV91115.1 - 5.9e-67 224.6 0.0 6.6e-67 224.4 0.0 1.0 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase UPF0093 PF03653.13 AHV91116.1 - 4.9e-15 56.0 8.8 7.6e-15 55.4 8.8 1.3 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0093) CopD PF05425.13 AHV91116.1 - 0.0002 21.7 10.8 0.0002 21.7 10.8 2.0 1 1 1 2 2 2 1 Copper resistance protein D PhoR PF11808.8 AHV91116.1 - 7.5 7.0 21.4 0.19 12.1 6.4 2.8 1 1 2 3 3 3 0 Phosphate regulon sensor protein PhoR Peripla_BP_6 PF13458.6 AHV91117.1 - 2.2e-57 195.3 4.5 2.8e-57 194.9 4.5 1.0 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.28 AHV91117.1 - 4.5e-29 101.7 0.0 6e-29 101.2 0.0 1.2 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.6 AHV91117.1 - 3.4e-14 52.6 0.1 3.3e-06 26.3 0.0 2.2 2 0 0 2 2 2 2 Periplasmic binding protein domain Fe-ADH PF00465.19 AHV91117.1 - 0.002 17.0 0.0 0.0041 16.0 0.0 1.5 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase AMP-binding PF00501.28 AHV91118.1 - 3e-79 266.6 0.0 4e-79 266.2 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme ABC_tran PF00005.27 AHV91119.1 - 9.3e-24 84.5 0.0 3.2e-23 82.8 0.0 1.9 2 0 0 2 2 2 1 ABC transporter ABC_membrane PF00664.23 AHV91119.1 - 6.2e-20 72.0 1.2 7.7e-20 71.7 1.2 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region AAA_21 PF13304.6 AHV91119.1 - 0.0022 17.8 0.1 1 9.1 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 AHV91119.1 - 0.034 13.9 0.0 0.076 12.8 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.6 AHV91119.1 - 0.086 13.2 0.2 0.086 13.2 0.2 2.4 3 0 0 3 3 3 0 AAA ATPase domain ATP_bind_1 PF03029.17 AHV91119.1 - 0.21 11.3 0.0 0.36 10.6 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein ABM PF03992.16 AHV91120.1 - 4.7e-06 26.6 0.0 6.5e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 Antibiotic biosynthesis monooxygenase DUF4286 PF14114.6 AHV91120.1 - 0.13 12.8 0.0 0.26 11.8 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4286) DUF4880 PF16220.5 AHV91121.1 - 1.1e-12 47.6 9.2 2.8e-12 46.3 9.2 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4880) UCR_Fe-S_N PF10399.9 AHV91121.1 - 0.035 13.4 2.4 0.08 12.3 2.4 1.6 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Aminotran_1_2 PF00155.21 AHV91122.1 - 9.7e-56 189.5 0.0 1.1e-55 189.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II 4HBT PF03061.22 AHV91123.1 - 9.1e-18 64.4 0.3 1.4e-17 63.8 0.2 1.3 1 1 0 1 1 1 1 Thioesterase superfamily MaoC_dehydratas PF01575.19 AHV91123.1 - 0.00037 20.0 0.1 0.00049 19.7 0.1 1.3 1 0 0 1 1 1 1 MaoC like domain 4HBT_3 PF13622.6 AHV91123.1 - 0.0091 16.3 0.3 0.012 15.9 0.3 1.2 1 0 0 1 1 1 1 Thioesterase-like superfamily TPP_enzyme_C PF02775.21 AHV91124.1 - 9.1e-25 87.2 0.1 1.2e-24 86.9 0.1 1.1 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain UvrA_inter PF17760.1 AHV91125.1 - 1.2e-32 112.2 0.1 4.7e-32 110.3 0.0 2.1 2 0 0 2 2 1 1 UvrA interaction domain UvrA_DNA-bind PF17755.1 AHV91125.1 - 4.6e-32 110.6 0.0 5.9e-31 107.1 0.0 2.3 2 0 0 2 2 2 1 UvrA DNA-binding domain ABC_tran PF00005.27 AHV91125.1 - 4.6e-21 75.8 0.0 0.00094 19.7 0.0 4.3 4 0 0 4 4 4 4 ABC transporter SMC_N PF02463.19 AHV91125.1 - 4.6e-10 39.3 0.0 0.017 14.6 0.0 4.2 4 0 0 4 4 4 3 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 AHV91125.1 - 2.5e-09 37.8 0.3 0.0042 17.5 0.1 3.2 2 1 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.6 AHV91125.1 - 3.9e-08 32.9 0.1 0.002 17.8 0.1 2.6 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_23 PF13476.6 AHV91125.1 - 4e-06 27.5 0.0 0.0071 16.9 0.0 2.4 2 0 0 2 2 2 2 AAA domain RsgA_GTPase PF03193.16 AHV91125.1 - 5.9e-06 26.3 0.0 0.017 15.1 0.0 2.4 2 0 0 2 2 2 2 RsgA GTPase AAA_25 PF13481.6 AHV91125.1 - 2.3e-05 24.1 0.2 0.23 11.0 0.1 2.9 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.6 AHV91125.1 - 7e-05 23.1 0.1 0.67 10.2 0.0 3.5 3 0 0 3 3 3 2 AAA domain AAA_21 PF13304.6 AHV91125.1 - 0.00011 22.1 4.2 0.013 15.4 0.1 4.0 5 0 0 5 5 4 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_18 PF13238.6 AHV91125.1 - 0.00014 22.4 0.3 0.76 10.3 0.1 3.4 3 0 0 3 3 3 1 AAA domain AAA_33 PF13671.6 AHV91125.1 - 0.00033 20.8 0.3 1.5 9.0 0.1 3.2 3 0 0 3 3 3 2 AAA domain APS_kinase PF01583.20 AHV91125.1 - 0.00038 20.4 0.3 1.1 9.1 0.0 3.1 3 0 0 3 3 3 2 Adenylylsulphate kinase NACHT PF05729.12 AHV91125.1 - 0.001 19.0 0.0 0.48 10.3 0.0 2.4 2 0 0 2 2 2 1 NACHT domain DnaJ_CXXCXGXG PF00684.19 AHV91125.1 - 0.0014 18.9 3.8 0.019 15.3 0.3 2.8 3 0 0 3 3 2 1 DnaJ central domain ATPase PF06745.13 AHV91125.1 - 0.0018 17.7 0.0 1.4 8.3 0.0 2.4 2 0 0 2 2 2 2 KaiC T2SSE PF00437.20 AHV91125.1 - 0.0031 16.6 0.0 0.74 8.8 0.0 2.4 2 0 0 2 2 2 1 Type II/IV secretion system protein cobW PF02492.19 AHV91125.1 - 0.0039 16.8 0.1 0.44 10.1 0.0 2.4 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain Viral_helicase1 PF01443.18 AHV91125.1 - 0.0051 16.6 0.0 0.16 11.7 0.0 2.6 3 0 0 3 3 2 1 Viral (Superfamily 1) RNA helicase AAA_30 PF13604.6 AHV91125.1 - 0.0052 16.5 0.1 1.4 8.6 0.1 3.1 3 0 0 3 3 3 1 AAA domain DUF2075 PF09848.9 AHV91125.1 - 0.0055 16.0 0.1 2 7.5 0.0 2.2 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) AAA_14 PF13173.6 AHV91125.1 - 0.0057 16.7 0.0 8.4 6.4 0.0 3.1 3 0 0 3 3 3 0 AAA domain MMR_HSR1 PF01926.23 AHV91125.1 - 0.0093 16.0 0.1 0.91 9.6 0.0 2.7 2 0 0 2 2 2 1 50S ribosome-binding GTPase AAA_24 PF13479.6 AHV91125.1 - 0.021 14.5 0.1 4.4 7.0 0.0 3.1 3 0 0 3 3 3 0 AAA domain MeaB PF03308.16 AHV91125.1 - 0.033 13.2 0.1 0.79 8.6 0.0 2.3 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_7 PF12775.7 AHV91125.1 - 0.046 13.2 0.0 4.3 6.8 0.0 2.6 2 0 0 2 2 2 0 P-loop containing dynein motor region AAA_28 PF13521.6 AHV91125.1 - 0.05 13.8 0.1 13 6.0 0.1 2.8 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 AHV91125.1 - 0.051 14.0 0.0 3.6 8.0 0.0 2.6 3 0 0 3 3 2 0 RNA helicase NTPase_1 PF03266.15 AHV91125.1 - 0.1 12.5 0.1 2.2 8.2 0.0 2.5 2 0 0 2 2 2 0 NTPase BCA_ABC_TP_C PF12399.8 AHV91125.1 - 0.12 12.4 2.1 5.5 7.0 0.3 2.5 2 0 0 2 2 2 0 Branched-chain amino acid ATP-binding cassette transporter Zeta_toxin PF06414.12 AHV91125.1 - 0.14 11.4 0.1 24 4.1 0.0 2.9 3 0 0 3 3 3 0 Zeta toxin Ploopntkinase3 PF18751.1 AHV91125.1 - 0.14 12.0 0.0 14 5.5 0.0 2.6 2 0 0 2 2 2 0 P-loop Nucleotide Kinase3 AAA_15 PF13175.6 AHV91125.1 - 0.15 11.7 0.2 45 3.6 0.0 3.3 4 0 0 4 4 4 0 AAA ATPase domain DAP3 PF10236.9 AHV91125.1 - 0.2 10.8 0.1 1.7 7.7 0.0 2.0 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 ATP_bind_2 PF03668.15 AHV91125.1 - 0.48 9.7 1.8 39 3.4 0.0 3.1 3 0 0 3 3 3 0 P-loop ATPase protein family Zn-ribbon_8 PF09723.10 AHV91125.1 - 0.67 10.1 5.3 12 6.1 0.0 3.3 3 0 0 3 3 3 0 Zinc ribbon domain Anti-TRAP PF15777.5 AHV91125.1 - 2.2 8.3 4.2 26 4.9 0.2 3.0 3 1 0 3 3 2 0 Tryptophan RNA-binding attenuator protein inhibitory protein GerE PF00196.19 AHV91126.1 - 4.5e-17 61.3 0.1 5.7e-17 61.0 0.1 1.1 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 AHV91126.1 - 2.4e-06 27.1 0.0 4e-06 26.4 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.6 AHV91126.1 - 1.9e-05 24.3 0.2 9.9e-05 22.0 0.1 2.1 2 0 0 2 2 2 1 Homeodomain-like domain HTH_24 PF13412.6 AHV91126.1 - 0.0004 19.9 0.1 0.0007 19.1 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_10 PF04967.12 AHV91126.1 - 0.001 18.9 0.2 0.0042 16.8 0.1 1.9 1 1 1 2 2 2 1 HTH DNA binding domain Sigma70_r4 PF04545.16 AHV91126.1 - 0.0024 17.4 0.1 0.0041 16.6 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_29 PF13551.6 AHV91126.1 - 0.0025 17.8 0.0 0.0048 16.9 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn helix HTH_28 PF13518.6 AHV91126.1 - 0.0025 17.9 0.1 0.0055 16.8 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_40 PF14493.6 AHV91126.1 - 0.0026 18.2 0.0 0.0031 17.9 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 AHV91126.1 - 0.013 14.9 0.2 0.025 14.0 0.2 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_20 PF12840.7 AHV91126.1 - 0.014 15.5 0.0 0.02 14.9 0.0 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_11 PF08279.12 AHV91126.1 - 0.022 14.7 0.0 0.036 14.0 0.0 1.3 1 0 0 1 1 1 0 HTH domain HTH_7 PF02796.15 AHV91126.1 - 0.026 14.6 0.0 0.049 13.7 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase RP-C PF03428.13 AHV91126.1 - 0.032 13.9 0.0 0.041 13.5 0.0 1.3 1 0 0 1 1 1 0 Replication protein C N-terminal domain HTH_AsnC-type PF13404.6 AHV91126.1 - 0.033 14.0 0.1 0.069 13.0 0.1 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Sigma70_ECF PF07638.11 AHV91126.1 - 0.09 12.7 0.4 0.11 12.4 0.1 1.3 2 0 0 2 2 1 0 ECF sigma factor HTH_36 PF13730.6 AHV91126.1 - 0.1 12.6 0.0 0.16 12.0 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_31 PF13560.6 AHV91126.1 - 0.59 10.5 6.3 1.1 9.7 6.3 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain ArsB PF02040.15 AHV91127.1 - 2.4e-146 488.4 28.5 2.7e-146 488.2 28.5 1.0 1 0 0 1 1 1 1 Arsenical pump membrane protein CitMHS PF03600.16 AHV91127.1 - 7.7e-25 87.7 42.5 7.7e-25 87.7 42.5 1.7 1 1 1 2 2 2 1 Citrate transporter Oxidored_q2 PF00420.24 AHV91129.1 - 1.2e-24 85.9 0.0 1.4e-24 85.7 0.0 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L GIDA_assoc PF13932.6 AHV91130.1 - 2.5e-77 259.8 0.0 3.7e-77 259.3 0.0 1.2 1 0 0 1 1 1 1 GidA associated domain GIDA PF01134.22 AHV91130.1 - 7.6e-76 255.7 0.0 9.5e-76 255.4 0.0 1.1 1 0 0 1 1 1 1 Glucose inhibited division protein A MMgT PF10270.9 AHV91130.1 - 0.012 15.9 0.0 8.7 6.8 0.0 2.4 2 0 0 2 2 2 0 Membrane magnesium transporter Tir_receptor_M PF03549.14 AHV91130.1 - 0.42 11.0 1.6 0.46 10.9 0.2 1.8 2 0 0 2 2 2 0 Translocated intimin receptor (Tir) intimin-binding domain NUDIX PF00293.28 AHV91131.1 - 5e-12 46.0 0.3 9.9e-12 45.0 0.3 1.5 1 1 0 1 1 1 1 NUDIX domain DUF4743 PF15916.5 AHV91131.1 - 7e-07 29.2 0.0 1.2e-06 28.5 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4743) rve PF00665.26 AHV91132.1 - 4.6e-32 110.7 0.8 6.5e-32 110.2 0.1 1.6 2 0 0 2 2 1 1 Integrase core domain LZ_Tnp_IS481 PF13011.6 AHV91132.1 - 7.7e-22 77.6 2.7 1.1e-19 70.7 0.4 2.6 1 1 1 2 2 2 1 leucine-zipper of insertion element IS481 rve_3 PF13683.6 AHV91132.1 - 5.4e-19 67.7 2.7 1.2e-18 66.6 2.7 1.6 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.6 AHV91132.1 - 6.1e-17 60.9 4.4 1.2e-07 31.3 0.1 2.7 2 0 0 2 2 2 2 Homeodomain-like domain HTH_28 PF13518.6 AHV91132.1 - 1.5e-15 57.1 6.5 5.9e-11 42.3 0.1 3.4 4 0 0 4 4 3 2 Helix-turn-helix domain HTH_29 PF13551.6 AHV91132.1 - 9.8e-12 44.7 0.6 2.6e-06 27.4 0.0 2.6 2 0 0 2 2 2 2 Winged helix-turn helix HTH_32 PF13565.6 AHV91132.1 - 9.4e-11 42.2 0.7 9.4e-11 42.2 0.7 2.4 2 1 0 2 2 2 1 Homeodomain-like domain HTH_38 PF13936.6 AHV91132.1 - 1.5e-06 27.9 0.6 5.1e-06 26.1 0.5 2.1 2 0 0 2 2 1 1 Helix-turn-helix domain MarR_2 PF12802.7 AHV91132.1 - 8.1e-06 25.6 3.1 9.5e-05 22.2 1.2 2.6 2 0 0 2 2 2 1 MarR family HTH_31 PF13560.6 AHV91132.1 - 1.4e-05 25.3 1.7 0.00059 20.1 0.4 3.2 3 0 0 3 3 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 AHV91132.1 - 3e-05 23.6 0.1 0.0064 16.1 0.3 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 AHV91132.1 - 4.6e-05 22.8 0.1 0.00056 19.4 0.2 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 YdaS_antitoxin PF15943.5 AHV91132.1 - 0.00022 21.0 0.2 0.24 11.3 0.0 2.8 2 0 0 2 2 2 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_Tnp_ISL3 PF13542.6 AHV91132.1 - 0.00023 20.5 8.5 0.002 17.5 0.6 3.9 4 0 0 4 4 3 1 Helix-turn-helix domain of transposase family ISL3 HTH_24 PF13412.6 AHV91132.1 - 0.00028 20.4 0.2 0.0021 17.6 0.3 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_3 PF01381.22 AHV91132.1 - 0.00032 20.7 0.7 0.013 15.5 0.3 2.5 2 0 0 2 2 2 1 Helix-turn-helix HTH_Crp_2 PF13545.6 AHV91132.1 - 0.0004 20.3 0.3 0.0027 17.6 0.2 2.3 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain Trp_repressor PF01371.19 AHV91132.1 - 0.00082 19.5 0.2 0.006 16.7 0.1 2.2 2 0 0 2 2 2 1 Trp repressor protein CENP-B_N PF04218.13 AHV91132.1 - 0.0016 18.0 0.0 1.6 8.5 0.1 2.3 2 0 0 2 2 2 1 CENP-B N-terminal DNA-binding domain LacI PF00356.21 AHV91132.1 - 0.0017 18.1 1.8 0.0046 16.7 0.7 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family Fe_dep_repress PF01325.19 AHV91132.1 - 0.002 18.3 0.0 0.034 14.4 0.1 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.20 AHV91132.1 - 0.0023 17.8 0.0 0.93 9.4 0.0 2.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 AHV91132.1 - 0.0025 17.6 1.3 0.035 13.9 0.7 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_psq PF05225.16 AHV91132.1 - 0.0025 17.5 0.7 2.3 8.0 0.4 2.9 3 0 0 3 3 3 1 helix-turn-helix, Psq domain HTH_11 PF08279.12 AHV91132.1 - 0.0026 17.7 0.4 0.015 15.3 0.5 2.2 2 0 0 2 2 2 1 HTH domain SpoIIID PF12116.8 AHV91132.1 - 0.0026 17.8 0.0 1.1 9.4 0.0 2.4 2 0 0 2 2 2 1 Stage III sporulation protein D HTH_AsnC-type PF13404.6 AHV91132.1 - 0.0036 17.1 2.7 0.045 13.6 1.1 2.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_17 PF12728.7 AHV91132.1 - 0.0043 17.2 0.7 6.1 7.1 0.0 3.2 3 1 0 3 3 3 0 Helix-turn-helix domain RepB PF07506.11 AHV91132.1 - 0.0043 17.2 0.1 0.55 10.3 0.1 2.3 1 1 1 2 2 2 1 RepB plasmid partitioning protein HTH_Tnp_1 PF01527.20 AHV91132.1 - 0.0051 17.1 0.5 0.11 12.8 0.0 2.7 1 1 1 2 2 2 1 Transposase GntR PF00392.21 AHV91132.1 - 0.0054 16.4 0.8 0.5 10.1 0.3 2.5 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_10 PF04967.12 AHV91132.1 - 0.0077 16.0 0.1 0.049 13.4 0.2 2.2 2 0 0 2 2 2 1 HTH DNA binding domain HTH_35 PF13693.6 AHV91132.1 - 0.0089 16.0 1.5 0.073 13.1 0.6 2.8 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding UPF0175 PF03683.13 AHV91132.1 - 0.014 15.1 0.4 0.1 12.3 0.1 2.4 2 1 0 2 2 2 0 Uncharacterised protein family (UPF0175) HTH_30 PF13556.6 AHV91132.1 - 0.015 15.1 0.1 2 8.3 0.0 2.5 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain HTH_37 PF13744.6 AHV91132.1 - 0.016 15.2 0.1 0.13 12.3 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Tnp_4 PF13613.6 AHV91132.1 - 0.016 14.9 0.1 0.067 12.9 0.0 2.0 2 0 0 2 2 1 0 Helix-turn-helix of DDE superfamily endonuclease HTH_36 PF13730.6 AHV91132.1 - 0.02 14.8 0.1 0.58 10.2 0.0 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain DDE_Tnp_IS240 PF13610.6 AHV91132.1 - 0.034 14.4 0.1 0.05 13.8 0.1 1.3 1 0 0 1 1 1 0 DDE domain KORA PF16509.5 AHV91132.1 - 0.034 14.4 0.1 3.6 8.0 0.0 3.0 3 0 0 3 3 3 0 TrfB plasmid transcriptional repressor MarR PF01047.22 AHV91132.1 - 0.045 13.7 0.1 0.14 12.1 0.1 1.8 2 0 0 2 2 1 0 MarR family Crp PF00325.20 AHV91132.1 - 0.05 13.3 3.2 0.062 13.0 0.5 2.5 3 0 0 3 3 3 0 Bacterial regulatory proteins, crp family P22_Cro PF14549.6 AHV91132.1 - 0.051 13.4 1.6 9.6 6.1 0.1 2.5 2 0 0 2 2 2 0 DNA-binding transcriptional regulator Cro DUF746 PF05344.11 AHV91132.1 - 0.085 12.7 0.1 0.98 9.3 0.0 2.3 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) HTH_1 PF00126.27 AHV91132.1 - 0.1 12.5 2.8 4.7 7.2 0.5 2.6 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_26 PF13443.6 AHV91132.1 - 0.17 12.3 0.0 3.6 8.1 0.1 2.8 3 0 0 3 3 3 0 Cro/C1-type HTH DNA-binding domain HTH_8 PF02954.19 AHV91132.1 - 0.19 11.5 0.9 14 5.5 0.7 2.7 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family HTH_Tnp_Tc3_2 PF01498.18 AHV91132.1 - 0.27 11.5 2.6 0.47 10.7 0.1 2.6 3 0 0 3 3 1 0 Transposase HTH_33 PF13592.6 AHV91132.1 - 0.57 9.9 3.1 2.9 7.6 0.1 3.3 4 0 0 4 4 2 0 Winged helix-turn helix MerR PF00376.23 AHV91132.1 - 0.73 9.7 6.8 3.2 7.6 0.0 3.6 4 0 0 4 4 2 0 MerR family regulatory protein DUF815 PF05673.13 AHV91133.1 - 1.6e-107 358.3 0.0 1.9e-107 358.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_16 PF13191.6 AHV91133.1 - 3.9e-05 24.1 0.1 0.00053 20.4 0.0 2.4 1 1 1 2 2 2 1 AAA ATPase domain FtsK_SpoIIIE PF01580.18 AHV91133.1 - 0.00028 20.3 0.0 0.00041 19.8 0.0 1.3 1 0 0 1 1 1 1 FtsK/SpoIIIE family AAA PF00004.29 AHV91133.1 - 0.00087 19.7 0.0 0.0033 17.8 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 AHV91133.1 - 0.0011 18.7 0.0 0.002 17.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_14 PF13173.6 AHV91133.1 - 0.0031 17.6 0.0 0.0058 16.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain TrwB_AAD_bind PF10412.9 AHV91133.1 - 0.0036 16.3 0.0 0.0056 15.6 0.0 1.2 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain AAA_7 PF12775.7 AHV91133.1 - 0.0058 16.2 0.0 0.036 13.6 0.0 1.9 2 0 0 2 2 2 1 P-loop containing dynein motor region T2SSE PF00437.20 AHV91133.1 - 0.013 14.6 0.0 0.027 13.5 0.0 1.4 1 1 0 1 1 1 0 Type II/IV secretion system protein AAA_22 PF13401.6 AHV91133.1 - 0.014 15.6 0.0 0.049 13.9 0.0 1.9 1 1 1 2 2 2 0 AAA domain Sigma54_activat PF00158.26 AHV91133.1 - 0.023 14.4 0.0 0.035 13.8 0.0 1.2 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_28 PF13521.6 AHV91133.1 - 0.03 14.5 0.3 0.15 12.3 0.1 2.1 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.27 AHV91133.1 - 0.048 14.2 0.1 0.077 13.5 0.1 1.7 1 1 0 1 1 1 0 ABC transporter MeaB PF03308.16 AHV91133.1 - 0.05 12.6 0.0 0.074 12.0 0.0 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB IstB_IS21 PF01695.17 AHV91133.1 - 0.054 13.2 0.0 0.086 12.6 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein Zeta_toxin PF06414.12 AHV91133.1 - 0.06 12.6 0.0 0.16 11.3 0.0 1.7 2 0 0 2 2 2 0 Zeta toxin AAA_5 PF07728.14 AHV91133.1 - 0.065 13.2 0.1 0.16 11.9 0.1 1.7 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_30 PF13604.6 AHV91133.1 - 0.16 11.7 0.8 0.38 10.4 0.2 1.8 1 1 1 2 2 2 0 AAA domain ABC_tran PF00005.27 AHV91134.1 - 9.5e-21 74.8 0.0 1.2e-20 74.5 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 AHV91134.1 - 0.012 15.4 0.0 0.014 15.2 0.0 1.1 1 0 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system SbcCD_C PF13558.6 AHV91134.1 - 0.07 13.4 0.1 2 8.7 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Plug PF07715.15 AHV91135.1 - 1.4e-15 57.8 4.5 1.4e-15 57.8 4.5 1.6 2 0 0 2 2 2 1 TonB-dependent Receptor Plug Domain TctC PF03401.14 AHV91136.1 - 3.6e-72 242.7 0.0 4.5e-72 242.4 0.0 1.1 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor Acyl-CoA_dh_1 PF00441.24 AHV91137.1 - 5.6e-45 153.2 4.0 7.4e-45 152.8 4.0 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 AHV91137.1 - 2.2e-23 82.2 0.1 5.3e-23 81.1 0.0 1.6 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 AHV91137.1 - 3e-20 72.9 2.7 4.4e-20 72.3 2.7 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain HpaB_N PF11794.8 AHV91137.1 - 0.013 15.1 0.0 0.024 14.3 0.0 1.4 1 0 0 1 1 1 0 4-hydroxyphenylacetate 3-hydroxylase N terminal ABC_tran PF00005.27 AHV91138.1 - 1.1e-28 100.4 0.0 1.5e-28 100.1 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 AHV91138.1 - 8.6e-15 55.3 1.6 5.9e-07 29.6 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_33 PF13671.6 AHV91138.1 - 0.00027 21.1 0.0 0.0004 20.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 AHV91138.1 - 0.00036 21.0 0.3 0.00052 20.4 0.3 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 AHV91138.1 - 0.00037 20.3 0.6 0.023 14.4 0.2 2.1 2 0 0 2 2 2 1 AAA domain BCA_ABC_TP_C PF12399.8 AHV91138.1 - 0.00068 19.5 0.0 0.0016 18.3 0.0 1.6 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter cobW PF02492.19 AHV91138.1 - 0.00092 18.8 0.1 0.0015 18.1 0.1 1.3 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_23 PF13476.6 AHV91138.1 - 0.0011 19.5 0.0 0.0016 18.9 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.6 AHV91138.1 - 0.0029 17.2 0.5 0.007 16.0 0.1 1.8 2 1 0 2 2 2 1 AAA domain DLIC PF05783.11 AHV91138.1 - 0.0032 16.4 0.0 0.0047 15.8 0.0 1.2 1 0 0 1 1 1 1 Dynein light intermediate chain (DLIC) SRP54 PF00448.22 AHV91138.1 - 0.0038 16.9 0.3 0.0061 16.2 0.3 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_22 PF13401.6 AHV91138.1 - 0.0043 17.3 0.3 0.025 14.9 0.3 2.0 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 AHV91138.1 - 0.0053 17.0 0.1 0.012 15.9 0.1 1.6 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 AHV91138.1 - 0.0083 15.9 0.1 0.015 15.0 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 AHV91138.1 - 0.0094 15.4 0.0 1.2 8.5 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 AHV91138.1 - 0.012 15.5 0.1 0.026 14.4 0.0 1.5 2 0 0 2 2 2 0 RsgA GTPase DUF3584 PF12128.8 AHV91138.1 - 0.012 13.2 0.1 0.016 12.7 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_27 PF13514.6 AHV91138.1 - 0.017 14.7 0.0 0.029 14.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 AHV91138.1 - 0.021 14.9 0.1 0.04 14.0 0.1 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase NACHT PF05729.12 AHV91138.1 - 0.027 14.4 0.5 0.049 13.6 0.1 1.6 2 0 0 2 2 2 0 NACHT domain AAA_15 PF13175.6 AHV91138.1 - 0.041 13.6 0.0 0.064 13.0 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain ABC_ATPase PF09818.9 AHV91138.1 - 0.065 12.0 0.2 1 8.1 0.2 2.0 2 0 0 2 2 2 0 Predicted ATPase of the ABC class Zeta_toxin PF06414.12 AHV91138.1 - 0.073 12.3 0.1 0.11 11.8 0.1 1.2 1 0 0 1 1 1 0 Zeta toxin TsaE PF02367.17 AHV91138.1 - 0.1 12.6 0.1 0.18 11.8 0.1 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE PduV-EutP PF10662.9 AHV91138.1 - 0.24 11.1 0.1 0.49 10.1 0.1 1.5 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_13 PF13166.6 AHV91138.1 - 0.38 9.4 0.0 0.48 9.0 0.0 1.1 1 0 0 1 1 1 0 AAA domain Peptidase_M55 PF04951.13 AHV91139.1 - 1.4e-97 326.3 0.0 1.5e-97 326.1 0.0 1.0 1 0 0 1 1 1 1 D-aminopeptidase Sugar_tr PF00083.24 AHV91140.1 - 4.4e-36 124.7 35.4 3.2e-34 118.6 35.4 2.0 1 1 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 AHV91140.1 - 3.5e-26 92.0 49.2 1.6e-17 63.5 22.6 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Glyco_transf_9 PF01075.17 AHV91141.1 - 2.3e-45 154.8 0.0 3.2e-45 154.4 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase family 9 (heptosyltransferase) Epimerase_2 PF02350.19 AHV91141.1 - 0.077 11.8 0.0 0.099 11.5 0.0 1.1 1 0 0 1 1 1 0 UDP-N-acetylglucosamine 2-epimerase HMGL-like PF00682.19 AHV91142.1 - 1.3e-54 185.5 0.0 1.5e-54 185.4 0.0 1.0 1 0 0 1 1 1 1 HMGL-like YGGT PF02325.17 AHV91143.1 - 5.1e-30 103.7 25.4 3.5e-16 59.4 10.1 2.3 2 0 0 2 2 2 2 YGGT family YrvL PF14184.6 AHV91143.1 - 0.074 13.2 7.2 0.35 11.0 3.8 2.4 2 0 0 2 2 2 0 Regulatory protein YrvL TonB_dep_Rec PF00593.24 AHV91144.1 - 2e-50 173.1 31.9 2.9e-50 172.5 31.9 1.3 1 0 0 1 1 1 1 TonB dependent receptor Plug PF07715.15 AHV91144.1 - 6.1e-14 52.5 2.1 1.5e-13 51.2 0.4 2.4 2 0 0 2 2 2 1 TonB-dependent Receptor Plug Domain STN PF07660.14 AHV91144.1 - 8.4e-06 25.5 0.3 2.7e-05 23.9 0.1 2.1 2 0 0 2 2 2 1 Secretin and TonB N terminus short domain DUF560 PF04575.13 AHV91144.1 - 0.00065 19.2 0.2 0.0014 18.1 0.2 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF560) ColG_sub PF18496.1 AHV91144.1 - 0.028 14.6 1.1 4.1 7.6 0.0 2.5 2 0 0 2 2 2 0 Collagenase G catalytic helper subdomain DHDPS PF00701.22 AHV91146.1 - 1.6e-07 30.4 0.0 1.8e-07 30.2 0.0 1.2 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family YjgF_endoribonc PF14588.6 AHV91147.1 - 4.4e-34 117.8 0.6 4.8e-34 117.6 0.6 1.0 1 0 0 1 1 1 1 YjgF/chorismate_mutase-like, putative endoribonuclease Ribonuc_L-PSP PF01042.21 AHV91147.1 - 7.7e-14 51.8 0.0 9.4e-14 51.5 0.0 1.1 1 0 0 1 1 1 1 Endoribonuclease L-PSP Peptidase_S11 PF00768.20 AHV91148.1 - 2.2e-55 187.7 0.1 2.2e-55 187.7 0.1 1.7 2 0 0 2 2 2 1 D-alanyl-D-alanine carboxypeptidase Presenilin PF01080.17 AHV91148.1 - 0.2 10.4 5.4 0.24 10.1 5.4 1.1 1 0 0 1 1 1 0 Presenilin RAP1 PF07218.11 AHV91148.1 - 0.27 9.5 9.0 0.3 9.3 9.0 1.1 1 0 0 1 1 1 0 Rhoptry-associated protein 1 (RAP-1) SOBP PF15279.6 AHV91148.1 - 0.42 11.2 6.6 0.51 10.9 6.6 1.2 1 0 0 1 1 1 0 Sine oculis-binding protein Band_3_cyto PF07565.13 AHV91148.1 - 0.58 9.9 5.8 0.91 9.3 5.8 1.2 1 0 0 1 1 1 0 Band 3 cytoplasmic domain Macoilin PF09726.9 AHV91148.1 - 1.2 7.6 13.5 1.6 7.2 13.5 1.1 1 0 0 1 1 1 0 Macoilin family DUF5427 PF10310.9 AHV91148.1 - 2.6 6.9 12.2 3.3 6.6 12.2 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5427) CPSF100_C PF13299.6 AHV91148.1 - 3.6 7.8 8.6 7.8 6.7 8.6 1.6 1 0 0 1 1 1 0 Cleavage and polyadenylation factor 2 C-terminal Ndc1_Nup PF09531.10 AHV91148.1 - 6.5 5.3 12.5 8.4 4.9 12.5 1.1 1 0 0 1 1 1 0 Nucleoporin protein Ndc1-Nup TonB_dep_Rec PF00593.24 AHV91149.1 - 2.1e-65 222.4 20.8 2.1e-65 222.4 20.8 1.9 1 1 1 2 2 2 1 TonB dependent receptor Plug PF07715.15 AHV91149.1 - 1.6e-05 25.4 0.6 4.5e-05 24.0 0.4 1.9 2 0 0 2 2 2 1 TonB-dependent Receptor Plug Domain eIF-1a PF01176.19 AHV91150.1 - 6.7e-27 93.1 0.0 7.5e-27 92.9 0.0 1.0 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 RsgA_N PF16745.5 AHV91150.1 - 0.0062 16.3 0.1 0.013 15.2 0.0 1.7 1 1 1 2 2 2 1 RsgA N-terminal domain RNase_II_C_S1 PF18614.1 AHV91150.1 - 0.015 15.2 0.0 0.033 14.1 0.0 1.6 2 0 0 2 2 2 0 RNase II-type exonuclease C-terminal S1 domain 4HBT PF03061.22 AHV91150.1 - 0.077 13.4 0.1 0.18 12.2 0.0 1.6 2 1 0 2 2 2 0 Thioesterase superfamily Thr_synth_N PF14821.6 AHV91151.1 - 3e-27 94.7 0.0 8.4e-27 93.2 0.0 1.8 1 0 0 1 1 1 1 Threonine synthase N terminus PALP PF00291.25 AHV91151.1 - 5.1e-11 42.5 0.1 2.5e-10 40.3 0.1 1.9 1 1 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme UTRA PF07702.13 AHV91151.1 - 0.13 12.1 0.0 2 8.3 0.0 2.3 2 0 0 2 2 2 0 UTRA domain LysR_substrate PF03466.20 AHV91152.1 - 3.7e-22 78.7 5.9 3.7e-22 78.7 5.9 1.8 2 0 0 2 2 2 1 LysR substrate binding domain HTH_1 PF00126.27 AHV91152.1 - 1e-17 63.8 2.8 1e-17 63.8 2.8 2.4 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_30 PF13556.6 AHV91152.1 - 0.0023 17.7 0.0 0.005 16.6 0.0 1.5 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain MarR_2 PF12802.7 AHV91152.1 - 0.31 11.0 6.2 0.067 13.1 1.4 2.2 2 0 0 2 2 2 0 MarR family Carb_kinase PF01256.17 AHV91153.1 - 1.5e-49 168.7 5.1 1.7e-49 168.5 5.1 1.0 1 0 0 1 1 1 1 Carbohydrate kinase Phos_pyr_kin PF08543.12 AHV91153.1 - 1.2e-06 28.1 0.1 3.5e-06 26.6 0.1 1.8 1 1 0 1 1 1 1 Phosphomethylpyrimidine kinase HK PF02110.15 AHV91153.1 - 0.065 12.6 0.4 0.099 12.0 0.4 1.2 1 0 0 1 1 1 0 Hydroxyethylthiazole kinase family 4HBT PF03061.22 AHV91154.1 - 4.3e-09 36.6 0.2 6.9e-09 35.9 0.2 1.3 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_3 PF13622.6 AHV91154.1 - 0.00018 21.9 0.3 0.00021 21.7 0.3 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily DUF4442 PF14539.6 AHV91154.1 - 0.011 15.8 0.0 0.013 15.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4442) DDE_Tnp_ISL3 PF01610.17 AHV91155.1 - 3.7e-65 220.0 0.3 4.5e-65 219.7 0.3 1.1 1 0 0 1 1 1 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV91155.1 - 3.2e-06 26.5 0.1 7.2e-06 25.3 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 NRho PF16733.5 AHV91155.1 - 0.0041 17.1 0.2 0.011 15.8 0.0 1.7 2 0 0 2 2 2 1 Rhomboid N-terminal domain SLT_L PF14718.6 AHV91155.1 - 0.0052 16.9 2.2 0.011 15.9 1.5 1.8 2 0 0 2 2 2 1 Soluble lytic murein transglycosylase L domain BPD_transp_1 PF00528.22 AHV91156.1 - 9.5e-16 58.1 12.3 1.3e-15 57.7 12.3 1.2 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component MerR-DNA-bind PF09278.11 AHV91158.1 - 3.4e-20 72.3 5.1 5.1e-20 71.8 5.1 1.3 1 0 0 1 1 1 1 MerR, DNA binding MerR_1 PF13411.6 AHV91158.1 - 1.1e-17 63.9 0.1 2.6e-17 62.7 0.0 1.6 2 0 0 2 2 2 1 MerR HTH family regulatory protein MerR PF00376.23 AHV91158.1 - 1.4e-15 56.8 0.3 1.4e-15 56.8 0.3 1.6 2 0 0 2 2 2 1 MerR family regulatory protein Death PF00531.22 AHV91158.1 - 0.029 14.5 0.3 0.1 12.8 0.3 1.9 1 1 0 1 1 1 0 Death domain TyeA PF09059.10 AHV91158.1 - 0.046 13.8 0.1 0.065 13.3 0.1 1.2 1 0 0 1 1 1 0 TyeA HhH-GPD PF00730.25 AHV91158.1 - 0.051 14.0 0.1 1.3 9.5 0.1 2.1 1 1 1 2 2 2 0 HhH-GPD superfamily base excision DNA repair protein DUF3723 PF12520.8 AHV91158.1 - 0.059 12.0 0.0 0.069 11.8 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3723) SOR_SNZ PF01680.17 AHV91158.1 - 0.12 12.1 0.0 0.17 11.7 0.0 1.2 1 0 0 1 1 1 0 SOR/SNZ family ABC_tran PF00005.27 AHV91159.1 - 7.1e-59 198.2 0.0 6e-30 104.5 0.0 2.6 3 0 0 3 3 3 2 ABC transporter oligo_HPY PF08352.12 AHV91159.1 - 4.9e-20 71.8 0.1 2.9e-09 37.3 0.1 2.4 2 0 0 2 2 2 2 Oligopeptide/dipeptide transporter, C-terminal region SMC_N PF02463.19 AHV91159.1 - 2.8e-11 43.3 0.4 2.2e-06 27.3 0.0 2.8 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 AHV91159.1 - 2.6e-09 37.5 3.4 0.0031 17.8 0.1 3.8 2 2 0 2 2 2 2 AAA domain AAA_16 PF13191.6 AHV91159.1 - 3.9e-07 30.6 2.7 0.02 15.3 1.0 2.7 2 1 0 2 2 2 2 AAA ATPase domain AAA_21 PF13304.6 AHV91159.1 - 7.8e-07 29.2 4.0 0.0027 17.6 0.0 3.8 2 2 0 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system TniB PF05621.11 AHV91159.1 - 8.5e-06 25.3 1.5 0.094 12.1 0.1 4.0 4 0 0 4 4 4 1 Bacterial TniB protein RsgA_GTPase PF03193.16 AHV91159.1 - 1.5e-05 25.0 0.1 0.2 11.6 0.0 2.4 2 0 0 2 2 2 2 RsgA GTPase AAA_29 PF13555.6 AHV91159.1 - 3.5e-05 23.5 0.2 0.12 12.2 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_7 PF12775.7 AHV91159.1 - 9.3e-05 22.0 0.3 0.13 11.8 0.0 2.9 3 0 0 3 3 3 2 P-loop containing dynein motor region IstB_IS21 PF01695.17 AHV91159.1 - 0.00019 21.2 0.1 0.011 15.5 0.0 2.7 3 0 0 3 3 3 1 IstB-like ATP binding protein AAA_25 PF13481.6 AHV91159.1 - 0.00026 20.6 0.2 0.3 10.7 0.1 3.1 3 0 0 3 3 3 1 AAA domain RNA_helicase PF00910.22 AHV91159.1 - 0.0021 18.4 0.2 1.5 9.2 0.0 2.5 2 0 0 2 2 2 1 RNA helicase AIG1 PF04548.16 AHV91159.1 - 0.0035 16.7 0.9 0.2 10.9 0.1 2.4 2 0 0 2 2 2 1 AIG1 family CbiA PF01656.23 AHV91159.1 - 0.0037 17.3 0.2 0.11 12.6 0.0 2.6 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_5 PF07728.14 AHV91159.1 - 0.0057 16.7 0.5 0.71 9.9 0.0 2.6 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) ATP-synt_ab PF00006.25 AHV91159.1 - 0.0087 15.7 0.1 3.1 7.4 0.1 2.5 2 1 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain DUF87 PF01935.17 AHV91159.1 - 0.012 15.7 2.1 0.99 9.4 0.2 2.4 2 0 0 2 2 2 0 Helicase HerA, central domain NACHT PF05729.12 AHV91159.1 - 0.016 15.1 0.3 4.6 7.1 0.1 2.5 2 0 0 2 2 2 0 NACHT domain Hpr_kinase_C PF07475.12 AHV91159.1 - 0.018 14.6 1.1 1.3 8.6 0.3 2.4 2 0 0 2 2 2 0 HPr Serine kinase C-terminal domain AAA_30 PF13604.6 AHV91159.1 - 0.021 14.5 3.0 6.8 6.4 0.0 3.4 3 1 0 3 3 3 0 AAA domain Sigma54_activat PF00158.26 AHV91159.1 - 0.043 13.5 0.1 5.2 6.7 0.0 2.5 2 0 0 2 2 2 0 Sigma-54 interaction domain Pox_A32 PF04665.12 AHV91159.1 - 0.046 13.2 0.6 1.2 8.5 0.0 2.3 2 0 0 2 2 2 0 Poxvirus A32 protein AAA PF00004.29 AHV91159.1 - 0.07 13.6 0.0 1.2 9.6 0.0 2.9 3 1 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) PRK PF00485.18 AHV91159.1 - 0.12 12.1 0.3 4.8 6.9 0.0 2.3 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family TrwB_AAD_bind PF10412.9 AHV91159.1 - 0.12 11.3 0.3 1.9 7.3 0.1 2.2 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain AAA_24 PF13479.6 AHV91159.1 - 0.13 12.0 0.1 18 4.9 0.1 2.5 2 0 0 2 2 2 0 AAA domain ABC_ATPase PF09818.9 AHV91159.1 - 0.14 10.9 1.0 0.85 8.3 0.4 2.4 2 1 0 2 2 2 0 Predicted ATPase of the ABC class NB-ARC PF00931.22 AHV91159.1 - 0.2 10.8 0.1 21 4.2 0.0 2.3 2 0 0 2 2 2 0 NB-ARC domain AAA_33 PF13671.6 AHV91159.1 - 0.45 10.7 3.2 14 5.8 0.1 2.8 2 1 0 2 2 2 0 AAA domain rve PF00665.26 AHV91160.1 - 7e-21 74.6 0.3 2.3e-20 73.0 0.0 1.7 2 0 0 2 2 2 1 Integrase core domain rve_3 PF13683.6 AHV91160.1 - 1e-19 70.1 2.7 1.4e-19 69.6 2.7 1.2 1 0 0 1 1 1 1 Integrase core domain PG_binding_2 PF08823.11 AHV91160.1 - 0.019 15.3 0.0 0.027 14.8 0.0 1.3 1 0 0 1 1 1 0 Putative peptidoglycan binding domain DDE_Tnp_1_2 PF13586.6 AHV91160.1 - 0.092 13.1 0.4 0.22 11.9 0.1 1.8 1 1 1 2 2 2 0 Transposase DDE domain AA_kinase PF00696.28 AHV91161.1 - 3e-42 144.9 2.2 4.3e-42 144.4 2.2 1.2 1 0 0 1 1 1 1 Amino acid kinase family PUA PF01472.20 AHV91161.1 - 9.9e-24 83.1 0.1 2.3e-23 82.0 0.1 1.7 1 0 0 1 1 1 1 PUA domain PUA_3 PF17785.1 AHV91161.1 - 0.057 13.2 0.0 0.16 11.8 0.0 1.8 1 0 0 1 1 1 0 PUA-like domain DDE_Tnp_ISL3 PF01610.17 AHV91162.1 - 7.9e-65 218.9 1.2 1.1e-64 218.4 0.3 1.6 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV91162.1 - 1.4e-11 43.6 0.1 3.6e-11 42.3 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV91162.1 - 5.3e-09 36.6 11.2 1.1e-08 35.6 11.2 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV91162.1 - 0.0056 16.7 0.2 0.016 15.3 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain SLT_L PF14718.6 AHV91162.1 - 0.016 15.3 1.5 0.016 15.3 1.5 1.8 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain NOB1_Zn_bind PF08772.11 AHV91162.1 - 0.017 15.2 0.2 1.2 9.3 0.0 2.5 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-IS66 PF13005.7 AHV91162.1 - 8.2 6.9 9.6 3.6 8.1 6.6 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 MgtE_N PF03448.17 AHV91163.1 - 1.6e-26 92.9 3.8 1.6e-26 92.9 3.8 3.2 3 0 0 3 3 3 1 MgtE intracellular N domain MgtE PF01769.16 AHV91163.1 - 2.3e-22 79.7 11.2 4.2e-22 78.8 11.2 1.4 1 0 0 1 1 1 1 Divalent cation transporter CBS PF00571.28 AHV91163.1 - 6.1e-12 45.8 3.2 2.4e-06 27.9 0.2 2.8 2 0 0 2 2 2 2 CBS domain FliG_M PF14841.6 AHV91163.1 - 0.049 13.8 1.9 1.4 9.2 0.1 3.0 3 0 0 3 3 3 0 FliG middle domain FliG_C PF01706.16 AHV91163.1 - 0.056 13.6 0.9 0.96 9.7 0.3 2.7 1 1 1 2 2 2 0 FliG C-terminal domain Glycos_trans_3N PF02885.17 AHV91163.1 - 0.13 12.1 4.9 3.5 7.5 0.2 4.1 4 0 0 4 4 4 0 Glycosyl transferase family, helical bundle domain Dpoe2NT PF12213.8 AHV91163.1 - 0.45 10.9 1.8 17 5.8 0.1 3.3 3 0 0 3 3 3 0 DNA polymerases epsilon N terminal EAL PF00563.20 AHV91164.1 - 7.1e-27 94.5 0.2 7.1e-27 94.5 0.2 2.0 2 0 0 2 2 2 1 EAL domain GGDEF PF00990.21 AHV91164.1 - 1.4e-14 54.2 0.1 4e-14 52.7 0.1 1.9 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain HATPase_c PF02518.26 AHV91164.1 - 1.4e-14 54.6 0.0 2.6e-14 53.7 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 AHV91164.1 - 3.5e-08 33.4 1.4 1.2e-07 31.7 1.4 2.0 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain DUF2842 PF11003.8 AHV91164.1 - 0.0094 16.2 0.6 0.0094 16.2 0.6 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF2842) HATPase_c_3 PF13589.6 AHV91164.1 - 0.022 14.6 0.0 0.043 13.7 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Nterm_IS4 PF13006.7 AHV91164.1 - 0.069 13.4 3.8 0.17 12.1 0.1 3.2 3 0 0 3 3 3 0 Insertion element 4 transposase N-terminal Fumerase PF05681.14 AHV91165.1 - 2.8e-99 331.9 0.0 4.4e-99 331.3 0.0 1.3 1 0 0 1 1 1 1 Fumarate hydratase (Fumerase) Fumerase_C PF05683.12 AHV91165.1 - 4.5e-82 274.3 0.0 6.3e-82 273.9 0.0 1.2 1 0 0 1 1 1 1 Fumarase C-terminus UTRA PF07702.13 AHV91166.1 - 4.4e-34 117.3 0.7 6.5e-34 116.8 0.7 1.3 1 0 0 1 1 1 1 UTRA domain GntR PF00392.21 AHV91166.1 - 6.1e-21 73.8 0.2 1.3e-20 72.8 0.2 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_DeoR PF08220.12 AHV91166.1 - 1.3e-06 28.0 0.1 2.7e-06 27.0 0.1 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_11 PF08279.12 AHV91166.1 - 0.00022 21.1 0.0 0.00042 20.2 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_12 PF08461.10 AHV91166.1 - 0.0036 17.2 0.3 0.11 12.4 0.1 2.4 2 0 0 2 2 2 1 Ribonuclease R winged-helix domain HTH_Crp_2 PF13545.6 AHV91166.1 - 0.007 16.3 0.1 0.018 15.0 0.1 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain TrmB PF01978.19 AHV91166.1 - 0.0098 15.8 0.0 0.022 14.6 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 AHV91166.1 - 0.012 15.9 0.5 0.043 14.2 0.1 2.0 1 1 1 2 2 2 0 Transcriptional regulator MarR_2 PF12802.7 AHV91166.1 - 0.013 15.4 2.0 0.017 15.0 0.2 2.1 2 0 0 2 2 2 0 MarR family HTH_24 PF13412.6 AHV91166.1 - 0.033 13.7 0.1 0.07 12.7 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_29 PF13551.6 AHV91166.1 - 0.046 13.7 0.0 0.1 12.6 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn helix HTH_28 PF13518.6 AHV91166.1 - 0.077 13.1 0.1 0.22 11.7 0.1 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_41 PF14502.6 AHV91166.1 - 0.1 12.3 0.0 0.24 11.1 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_36 PF13730.6 AHV91166.1 - 0.14 12.2 0.0 0.27 11.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Phos_pyr_kin PF08543.12 AHV91167.1 - 5.3e-06 26.0 0.0 5.7e-06 25.9 0.0 1.0 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Wzy_C PF04932.15 AHV91168.1 - 1.3e-19 70.4 0.4 1.3e-19 70.4 0.4 3.7 3 1 0 3 3 3 1 O-Antigen ligase DUF4307 PF14155.6 AHV91168.1 - 3.2 7.6 6.1 0.94 9.3 0.1 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF4307) ZapA PF05164.13 AHV91169.1 - 1.9e-17 63.5 0.0 2.1e-17 63.3 0.0 1.1 1 0 0 1 1 1 1 Cell division protein ZapA CSD PF00313.22 AHV91170.1 - 1.6e-28 98.4 0.1 1.7e-28 98.3 0.1 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain OB_RNB PF08206.11 AHV91170.1 - 0.0016 18.0 0.1 0.0024 17.5 0.1 1.2 1 0 0 1 1 1 1 Ribonuclease B OB domain KfrA_N PF11740.8 AHV91171.1 - 1.1e-25 90.5 16.1 1.1e-25 90.5 16.1 4.9 1 1 3 4 4 4 1 Plasmid replication region DNA-binding N-term AAA_9 PF12781.7 AHV91171.1 - 0.21 10.7 0.1 0.21 10.7 0.1 3.1 2 1 2 4 4 4 0 ATP-binding dynein motor region ATP_bind_2 PF03668.15 AHV91173.1 - 9.6e-73 244.9 0.0 1.2e-72 244.7 0.0 1.0 1 0 0 1 1 1 1 P-loop ATPase protein family DUF2214 PF09980.9 AHV91174.1 - 5e-49 165.9 7.5 5.5e-49 165.7 7.5 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2214) CBP_BcsG PF11658.8 AHV91174.1 - 0.12 10.7 1.2 0.13 10.6 1.2 1.1 1 0 0 1 1 1 0 Cellulose biosynthesis protein BcsG UPF0093 PF03653.13 AHV91174.1 - 1.7 8.9 9.7 0.62 10.3 3.8 2.5 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0093) Aldedh PF00171.22 AHV91175.1 - 1.7e-163 544.4 0.0 2e-163 544.2 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family DUF1487 PF07368.11 AHV91175.1 - 0.031 13.7 0.0 0.067 12.6 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1487) RdgC PF04381.12 AHV91176.1 - 2.1e-116 388.4 1.1 2.3e-116 388.2 1.1 1.0 1 0 0 1 1 1 1 Putative exonuclease, RdgC DUF2069 PF09842.9 AHV91177.1 - 9.7e-36 122.1 8.2 1.1e-35 121.9 8.2 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2069) Exosortase_EpsH PF09721.10 AHV91177.1 - 1.6 8.2 11.1 5 6.6 0.2 2.0 1 1 1 2 2 2 0 Transmembrane exosortase (Exosortase_EpsH) Peptidase_M48 PF01435.18 AHV91178.1 - 5.2e-39 134.1 0.0 7.7e-39 133.5 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 AHV91178.1 - 0.00037 19.8 0.0 0.00078 18.7 0.0 1.7 1 1 0 1 1 1 1 BlaR1 peptidase M56 SprT-like PF10263.9 AHV91178.1 - 0.0078 16.1 0.0 0.012 15.5 0.0 1.3 1 0 0 1 1 1 1 SprT-like family Peptidase_M1 PF01433.20 AHV91178.1 - 0.03 13.9 0.0 0.046 13.3 0.0 1.2 1 0 0 1 1 1 0 Peptidase family M1 domain PLDc_2 PF13091.6 AHV91179.1 - 1.7e-41 141.2 0.0 1.1e-24 86.8 0.0 2.4 2 0 0 2 2 2 2 PLD-like domain PLDc PF00614.22 AHV91179.1 - 3.9e-09 36.3 1.2 0.00026 21.1 0.1 2.6 2 0 0 2 2 2 2 Phospholipase D Active site motif PLDc_N PF13396.6 AHV91179.1 - 5e-07 29.5 0.4 5e-07 29.5 0.4 1.9 2 0 0 2 2 2 1 Phospholipase_D-nuclease N-terminal PP_kinase_C PF13090.6 AHV91179.1 - 0.0096 15.4 0.2 2.8 7.4 0.1 3.0 2 1 0 2 2 2 1 Polyphosphate kinase C-terminal domain 2 5TM-5TMR_LYT PF07694.12 AHV91179.1 - 0.03 13.8 0.1 0.053 13.0 0.1 1.4 1 0 0 1 1 1 0 5TMR of 5TMR-LYT Regulator_TrmB PF11495.8 AHV91179.1 - 0.098 11.8 0.0 18 4.4 0.0 2.8 3 0 0 3 3 3 0 Archaeal transcriptional regulator TrmB Transgly PF00912.22 AHV91180.1 - 5.5e-07 29.2 0.0 6.5e-07 29.0 0.0 1.1 1 0 0 1 1 1 1 Transglycosylase SGL PF08450.12 AHV91181.1 - 3.9e-14 52.8 0.1 4.6e-14 52.6 0.1 1.0 1 0 0 1 1 1 1 SMP-30/Gluconolactonase/LRE-like region ALAD PF00490.21 AHV91182.1 - 9.1e-137 455.5 0.0 1e-136 455.3 0.0 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase adh_short_C2 PF13561.6 AHV91183.1 - 2.2e-65 220.5 0.1 2.7e-65 220.2 0.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 AHV91183.1 - 2.5e-43 147.8 0.2 3.5e-43 147.3 0.2 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 AHV91183.1 - 1.6e-05 24.9 0.0 2.2e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 KR domain 3HCDH_N PF02737.18 AHV91183.1 - 0.019 14.9 0.2 0.03 14.2 0.2 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DDE_3 PF13358.6 AHV91183.1 - 0.11 12.3 0.0 0.17 11.7 0.0 1.2 1 0 0 1 1 1 0 DDE superfamily endonuclease FGase PF05013.12 AHV91184.1 - 5.8e-66 222.8 0.0 6.8e-66 222.6 0.0 1.0 1 0 0 1 1 1 1 N-formylglutamate amidohydrolase DcpS_C PF11969.8 AHV91185.1 - 1.6e-25 89.8 0.0 1.8e-25 89.6 0.0 1.0 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding HIT PF01230.23 AHV91185.1 - 7.1e-25 87.6 0.0 9.1e-25 87.3 0.0 1.1 1 0 0 1 1 1 1 HIT domain CDH PF02611.15 AHV91185.1 - 0.0034 17.0 0.0 0.0055 16.4 0.0 1.3 2 0 0 2 2 2 1 CDP-diacylglycerol pyrophosphatase MCPsignal PF00015.21 AHV91186.1 - 6.9e-53 179.0 24.1 1.4e-52 177.9 17.0 2.4 2 0 0 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 AHV91186.1 - 2.2e-13 50.4 1.9 1.2e-12 48.0 0.7 3.0 2 0 0 2 2 2 1 HAMP domain Serine_rich PF08824.10 AHV91186.1 - 0.05 13.6 1.8 0.098 12.7 0.2 2.3 2 1 0 2 2 2 0 Serine rich protein interaction domain E2F_TDP PF02319.20 AHV91186.1 - 0.092 12.8 0.6 0.52 10.4 0.2 2.4 2 1 0 2 2 2 0 E2F/DP family winged-helix DNA-binding domain Noelin-1 PF12308.8 AHV91186.1 - 0.2 11.7 1.2 1.3 9.1 0.2 2.5 2 0 0 2 2 2 0 Neurogenesis glycoprotein TMF_TATA_bd PF12325.8 AHV91186.1 - 0.77 10.0 4.4 8.7 6.6 0.1 3.2 2 1 0 3 3 3 0 TATA element modulatory factor 1 TATA binding NACHT_N PF17100.5 AHV91186.1 - 0.79 9.5 6.1 3.2 7.5 0.5 2.4 2 0 0 2 2 2 0 N-terminal domain of NWD NACHT-NTPase DUF948 PF06103.11 AHV91186.1 - 2 8.7 17.5 2.7 8.3 0.2 4.5 2 2 2 4 4 4 0 Bacterial protein of unknown function (DUF948) PolyA_pol_arg_C PF12626.7 AHV91187.1 - 1.2e-39 135.0 6.5 2.6e-39 134.0 6.5 1.5 1 0 0 1 1 1 1 Polymerase A arginine-rich C-terminus PolyA_pol PF01743.20 AHV91187.1 - 2.4e-36 125.0 1.0 4.6e-36 124.0 0.2 1.8 2 0 0 2 2 2 1 Poly A polymerase head domain PolyA_pol_RNAbd PF12627.7 AHV91187.1 - 9.2e-19 67.0 0.0 1.9e-18 65.9 0.0 1.5 1 0 0 1 1 1 1 Probable RNA and SrmB- binding site of polymerase A Pan_kinase PF03309.14 AHV91188.1 - 1.7e-45 155.4 0.0 2e-45 155.2 0.0 1.1 1 0 0 1 1 1 1 Type III pantothenate kinase Cupin_3 PF05899.12 AHV91189.1 - 9.9e-19 66.8 0.2 1.3e-18 66.4 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF861) Cupin_2 PF07883.11 AHV91189.1 - 5.6e-06 26.0 0.1 1.2e-05 25.0 0.1 1.6 2 0 0 2 2 2 1 Cupin domain AraC_binding PF02311.19 AHV91189.1 - 0.00031 20.7 0.0 0.00044 20.2 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_6 PF12852.7 AHV91189.1 - 0.0027 17.5 0.0 0.0034 17.1 0.0 1.2 1 0 0 1 1 1 1 Cupin EutQ PF06249.12 AHV91189.1 - 0.035 13.9 0.0 0.038 13.7 0.0 1.1 1 0 0 1 1 1 0 Ethanolamine utilisation protein EutQ Cupin_1 PF00190.22 AHV91189.1 - 0.079 12.6 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 Cupin Putative_PNPOx PF01243.20 AHV91190.1 - 9.7e-16 57.7 0.0 1.4e-15 57.2 0.0 1.3 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Na_H_Exchanger PF00999.21 AHV91191.1 - 7.7e-24 84.2 3.6 9.2e-24 83.9 3.6 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Sbt_1 PF05982.12 AHV91191.1 - 0.005 16.1 2.8 0.0081 15.4 2.8 1.3 1 0 0 1 1 1 1 Na+-dependent bicarbonate transporter superfamily DUF819 PF05684.12 AHV91191.1 - 0.012 14.6 1.2 0.015 14.4 1.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF819) UvrD_C_2 PF13538.6 AHV91191.1 - 0.066 13.0 0.2 0.33 10.8 0.0 2.1 2 0 0 2 2 2 0 UvrD-like helicase C-terminal domain ADH_zinc_N_2 PF13602.6 AHV91192.1 - 2e-22 80.7 0.3 3.4e-22 79.9 0.3 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N PF00107.26 AHV91192.1 - 2.3e-12 47.0 0.0 5.7e-12 45.7 0.0 1.7 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_N PF08240.12 AHV91192.1 - 1e-08 35.0 0.0 2.4e-08 33.8 0.0 1.6 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain Glu_dehyd_C PF16912.5 AHV91192.1 - 0.0053 16.3 0.0 0.0077 15.7 0.0 1.2 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus TrkA_N PF02254.18 AHV91192.1 - 0.031 14.5 0.1 0.21 11.8 0.0 2.2 2 0 0 2 2 2 0 TrkA-N domain DapB_N PF01113.20 AHV91192.1 - 0.084 13.0 0.0 0.16 12.1 0.0 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus PAP2 PF01569.21 AHV91193.1 - 7.2e-22 77.6 8.8 7.2e-22 77.6 8.8 2.4 1 1 1 2 2 2 1 PAP2 superfamily PAP2_3 PF14378.6 AHV91193.1 - 0.004 16.9 18.9 0.004 16.9 18.9 1.9 1 1 0 1 1 1 1 PAP2 superfamily UIM PF02809.20 AHV91193.1 - 0.065 13.2 0.2 0.15 12.0 0.2 1.7 1 0 0 1 1 1 0 Ubiquitin interaction motif Phage_holin_2_1 PF04971.12 AHV91193.1 - 1.1 9.2 8.1 20 5.3 1.1 3.4 3 0 0 3 3 3 0 Bacteriophage P21 holin S RcpC PF16976.5 AHV91194.1 - 4.4e-11 42.8 0.5 4.3e-09 36.4 0.5 2.3 1 1 0 1 1 1 1 Flp pilus assembly protein RcpC/CpaB SAF PF08666.12 AHV91194.1 - 4.1e-08 33.7 0.2 1.2e-07 32.2 0.2 1.8 1 0 0 1 1 1 1 SAF domain ChapFlgA PF13144.6 AHV91194.1 - 9.5e-05 22.5 0.0 0.0003 20.8 0.0 1.8 2 0 0 2 2 2 1 Chaperone for flagella basal body P-ring formation DUF1501 PF07394.12 AHV91195.1 - 6.8e-43 147.2 2.2 1.1e-42 146.5 2.2 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF1501) Cation_ATPase_C PF00689.21 AHV91196.1 - 4.6e-17 62.3 9.6 5.9e-17 62.0 9.6 1.1 1 0 0 1 1 1 1 Cation transporting ATPase, C-terminus COX7C PF02935.16 AHV91196.1 - 0.0073 16.6 0.2 0.039 14.2 0.1 2.3 2 0 0 2 2 2 1 Cytochrome c oxidase subunit VIIc 2Fe-2S_thioredx PF01257.19 AHV91197.1 - 1.5e-47 161.1 0.0 1.7e-47 160.9 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin-like [2Fe-2S] ferredoxin UvrB_inter PF17757.1 AHV91198.1 - 1.3e-31 108.6 0.0 3.1e-31 107.4 0.0 1.7 1 0 0 1 1 1 1 UvrB interaction domain UvrB PF12344.8 AHV91198.1 - 2e-19 69.1 0.1 4.1e-19 68.1 0.1 1.6 1 0 0 1 1 1 1 Ultra-violet resistance protein B Helicase_C PF00271.31 AHV91198.1 - 6.2e-18 65.2 0.2 1.8e-17 63.7 0.2 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 AHV91198.1 - 2e-08 34.4 0.0 9.3e-08 32.3 0.0 2.0 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit UVR PF02151.19 AHV91198.1 - 9.4e-05 22.0 5.4 9.4e-05 22.0 5.4 2.9 3 0 0 3 3 3 1 UvrB/uvrC motif DEAD PF00270.29 AHV91198.1 - 0.00055 19.8 0.0 0.0039 17.0 0.0 2.4 3 0 0 3 3 3 1 DEAD/DEAH box helicase AAA_30 PF13604.6 AHV91198.1 - 0.00061 19.6 0.5 0.006 16.3 0.0 2.8 3 1 0 3 3 3 1 AAA domain Kinesin PF00225.23 AHV91198.1 - 0.0058 15.6 0.0 0.0095 14.9 0.0 1.3 1 0 0 1 1 1 1 Kinesin motor domain AAA_19 PF13245.6 AHV91198.1 - 0.014 15.7 0.0 6.4 7.1 0.0 2.8 2 1 0 2 2 2 0 AAA domain UvrD-helicase PF00580.21 AHV91198.1 - 0.039 13.5 1.5 6.2 6.2 0.1 2.3 2 0 0 2 2 2 0 UvrD/REP helicase N-terminal domain UB2H PF14814.6 AHV91198.1 - 0.062 13.3 0.0 0.16 12.0 0.0 1.7 1 0 0 1 1 1 0 Bifunctional transglycosylase second domain DUF87 PF01935.17 AHV91198.1 - 0.082 13.0 1.0 0.27 11.3 0.1 2.3 3 0 0 3 3 3 0 Helicase HerA, central domain Microtub_bd PF16796.5 AHV91198.1 - 0.092 12.7 0.1 0.27 11.2 0.0 1.7 2 0 0 2 2 2 0 Microtubule binding PNTB_4TM PF12769.7 AHV91199.1 - 1.2e-35 121.8 8.4 1.5e-35 121.5 8.4 1.0 1 0 0 1 1 1 1 4TM region of pyridine nucleotide transhydrogenase, mitoch EI24 PF07264.11 AHV91199.1 - 0.055 13.7 2.7 0.074 13.3 2.7 1.2 1 0 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) DUF3392 PF11872.8 AHV91199.1 - 0.066 13.5 5.4 0.043 14.1 3.7 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3392) Adeno_E3_14_5 PF04834.12 AHV91199.1 - 0.14 12.7 1.1 0.21 12.1 1.1 1.3 1 0 0 1 1 1 0 Early E3 14.5 kDa protein Colicin_V PF02674.16 AHV91199.1 - 0.25 11.3 9.0 0.39 10.7 9.0 1.4 1 1 0 1 1 1 0 Colicin V production protein DUF3754 PF12576.8 AHV91199.1 - 0.41 10.6 2.8 0.36 10.8 1.9 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3754) PspC PF04024.12 AHV91199.1 - 0.47 10.3 3.0 0.44 10.4 0.6 2.0 2 0 0 2 2 2 0 PspC domain DUF485 PF04341.12 AHV91199.1 - 5.5 7.0 8.1 1.6 8.7 4.8 1.7 1 1 1 2 2 2 0 Protein of unknown function, DUF485 HTH_3 PF01381.22 AHV91200.1 - 1.1e-11 44.6 0.0 1.6e-11 44.1 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 AHV91200.1 - 7.9e-08 32.5 1.8 6.4e-07 29.6 0.7 2.4 2 1 1 3 3 3 1 Helix-turn-helix domain HTH_19 PF12844.7 AHV91200.1 - 1.3e-06 28.3 0.0 1.8e-06 27.8 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Phage_CI_repr PF07022.13 AHV91200.1 - 0.00022 21.2 0.0 0.00037 20.5 0.0 1.3 1 0 0 1 1 1 1 Bacteriophage CI repressor helix-turn-helix domain HTH_26 PF13443.6 AHV91200.1 - 0.0012 19.2 0.1 0.0017 18.7 0.1 1.2 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_AsnC-type PF13404.6 AHV91200.1 - 0.0086 15.9 0.5 0.51 10.2 0.0 2.5 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_37 PF13744.6 AHV91200.1 - 0.02 14.8 0.2 0.051 13.5 0.1 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_24 PF13412.6 AHV91200.1 - 0.039 13.5 0.1 0.1 12.2 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding YdaS_antitoxin PF15943.5 AHV91200.1 - 0.061 13.2 0.2 0.42 10.5 0.1 2.3 2 1 1 3 3 3 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT MarR_2 PF12802.7 AHV91200.1 - 0.07 13.0 0.5 0.29 11.1 0.0 2.1 3 0 0 3 3 3 0 MarR family TctC PF03401.14 AHV91201.1 - 2.7e-27 95.5 0.0 3.4e-27 95.2 0.0 1.1 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor AsmA_2 PF13502.6 AHV91202.1 - 1.1e-53 182.1 3.0 1.4e-53 181.8 3.0 1.1 1 0 0 1 1 1 1 AsmA-like C-terminal region GcpE PF04551.14 AHV91203.1 - 3.2e-110 368.5 0.0 3.6e-110 368.4 0.0 1.0 1 0 0 1 1 1 1 GcpE protein Kdo PF06293.14 AHV91203.1 - 0.17 11.2 0.0 0.94 8.8 0.0 1.9 2 0 0 2 2 2 0 Lipopolysaccharide kinase (Kdo/WaaP) family AAA PF00004.29 AHV91204.1 - 1.7e-14 54.4 0.0 2.9e-14 53.6 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 AHV91204.1 - 7.9e-14 51.8 0.0 1.4e-13 51.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 AHV91204.1 - 1.9e-07 31.6 2.2 4.2e-06 27.3 0.4 2.9 2 1 0 2 2 2 1 AAA ATPase domain Sigma54_activat PF00158.26 AHV91204.1 - 2.8e-07 30.4 0.0 0.0077 15.9 0.0 2.2 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_22 PF13401.6 AHV91204.1 - 3e-07 30.8 0.0 1e-06 29.1 0.0 1.9 1 1 0 1 1 1 1 AAA domain NACHT PF05729.12 AHV91204.1 - 2.4e-05 24.3 0.3 0.0017 18.3 0.0 2.5 3 0 0 3 3 2 1 NACHT domain AAA_2 PF07724.14 AHV91204.1 - 2.7e-05 24.4 0.0 4.3e-05 23.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_30 PF13604.6 AHV91204.1 - 0.00076 19.3 0.0 0.0015 18.3 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_3 PF07726.11 AHV91204.1 - 0.0022 17.8 0.0 0.24 11.3 0.0 2.4 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 AHV91204.1 - 0.0023 17.5 0.0 0.004 16.7 0.0 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region Mg_chelatase PF01078.21 AHV91204.1 - 0.0027 17.1 0.1 0.0061 16.0 0.0 1.6 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_19 PF13245.6 AHV91204.1 - 0.0042 17.4 0.5 0.079 13.3 0.5 2.2 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 AHV91204.1 - 0.0092 16.1 0.0 0.019 15.1 0.0 1.7 1 1 0 1 1 1 1 AAA domain RuvB_N PF05496.12 AHV91204.1 - 0.016 15.0 0.1 0.04 13.7 0.0 1.7 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain TsaE PF02367.17 AHV91204.1 - 0.017 15.1 0.0 0.032 14.2 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE TIP49 PF06068.13 AHV91204.1 - 0.02 14.1 0.1 0.19 10.9 0.0 2.1 1 1 1 2 2 2 0 TIP49 P-loop domain AAA_18 PF13238.6 AHV91204.1 - 0.021 15.4 0.0 0.045 14.3 0.0 1.7 1 1 0 1 1 1 0 AAA domain DUF2075 PF09848.9 AHV91204.1 - 0.023 14.0 0.0 0.026 13.8 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Sigma54_activ_2 PF14532.6 AHV91204.1 - 0.025 14.7 0.0 0.18 11.9 0.0 2.3 2 1 0 2 2 1 0 Sigma-54 interaction domain ATPase PF06745.13 AHV91204.1 - 0.029 13.7 0.0 0.083 12.2 0.0 1.6 2 0 0 2 2 2 0 KaiC RNA_helicase PF00910.22 AHV91204.1 - 0.042 14.3 0.0 0.11 12.9 0.0 1.7 2 0 0 2 2 2 0 RNA helicase AAA_14 PF13173.6 AHV91204.1 - 0.062 13.3 0.0 0.13 12.3 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_11 PF13086.6 AHV91204.1 - 0.066 13.0 0.0 0.095 12.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 AHV91204.1 - 0.17 11.6 0.0 0.28 10.9 0.0 1.4 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 AHV91204.1 - 0.22 11.4 0.1 1.1 9.1 0.0 2.1 2 1 0 2 2 2 0 NTPase rve_3 PF13683.6 AHV91205.1 - 3.8e-12 45.8 0.1 4.7e-12 45.5 0.1 1.1 1 0 0 1 1 1 1 Integrase core domain rve_2 PF13333.6 AHV91205.1 - 0.0067 16.6 0.0 0.0078 16.4 0.0 1.1 1 0 0 1 1 1 1 Integrase core domain UbiA PF01040.18 AHV91206.1 - 9.8e-57 192.1 28.2 1.3e-56 191.8 28.2 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF1980 PF09323.10 AHV91206.1 - 0.093 12.6 2.2 0.25 11.2 0.8 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1980) DUF4381 PF14316.6 AHV91206.1 - 6.4 7.0 14.0 16 5.7 3.3 3.6 3 0 0 3 3 3 0 Domain of unknown function (DUF4381) TonB_dep_Rec PF00593.24 AHV91207.1 - 4.4e-52 178.5 26.0 5e-52 178.3 26.0 1.0 1 0 0 1 1 1 1 TonB dependent receptor OMP_b-brl_3 PF14905.6 AHV91207.1 - 6.4e-07 28.7 8.6 1.4e-06 27.6 3.8 2.7 2 1 0 2 2 2 1 Outer membrane protein beta-barrel family Pterin_4a PF01329.19 AHV91208.1 - 1.2e-29 102.3 0.1 1.4e-29 102.1 0.1 1.0 1 0 0 1 1 1 1 Pterin 4 alpha carbinolamine dehydratase Sun2_CC2 PF18580.1 AHV91208.1 - 0.065 13.5 0.2 0.17 12.1 0.1 1.7 1 1 1 2 2 2 0 SUN2 coiled coil domain 2 DUF5070 PF16802.5 AHV91208.1 - 0.079 12.9 0.0 0.11 12.5 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF5070) ABC_tran PF00005.27 AHV91209.1 - 1.6e-25 90.2 0.0 2.2e-25 89.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 AHV91209.1 - 5.8e-09 35.7 0.0 0.0022 17.5 0.0 2.1 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 AHV91209.1 - 6.5e-06 26.8 0.0 1e-05 26.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_21 PF13304.6 AHV91209.1 - 7.5e-06 26.0 0.0 0.00011 22.2 0.0 2.0 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 AHV91209.1 - 8.3e-05 22.2 0.2 0.00016 21.3 0.2 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_27 PF13514.6 AHV91209.1 - 0.00037 20.1 0.0 0.0029 17.2 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_28 PF13521.6 AHV91209.1 - 0.0004 20.7 0.0 0.00062 20.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain ABC_ATPase PF09818.9 AHV91209.1 - 0.0007 18.5 1.5 0.064 12.1 0.0 3.1 3 1 0 3 3 3 1 Predicted ATPase of the ABC class AAA_22 PF13401.6 AHV91209.1 - 0.001 19.3 0.4 0.0036 17.6 0.4 2.1 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 AHV91209.1 - 0.0019 17.8 1.1 0.022 14.3 0.1 2.4 2 1 0 2 2 2 1 AAA domain AAA_30 PF13604.6 AHV91209.1 - 0.002 17.9 0.3 0.0055 16.5 0.3 1.9 1 1 0 1 1 1 1 AAA domain ATP_bind_1 PF03029.17 AHV91209.1 - 0.0026 17.6 0.1 0.043 13.6 0.0 2.1 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein AAA_16 PF13191.6 AHV91209.1 - 0.0057 17.1 4.6 0.083 13.3 4.6 2.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.6 AHV91209.1 - 0.0092 15.7 0.0 0.013 15.3 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 AHV91209.1 - 0.018 14.9 0.1 0.036 14.0 0.1 1.5 1 0 0 1 1 1 0 RsgA GTPase SRP54 PF00448.22 AHV91209.1 - 0.023 14.3 0.0 0.039 13.6 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain SbcCD_C PF13558.6 AHV91209.1 - 0.035 14.3 0.3 0.48 10.7 0.2 2.6 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit MukB PF04310.12 AHV91209.1 - 0.061 13.1 0.1 0.13 12.1 0.1 1.4 1 0 0 1 1 1 0 MukB N-terminal AAA_24 PF13479.6 AHV91209.1 - 0.075 12.7 0.0 1.1 9.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.15 AHV91209.1 - 0.088 12.7 0.0 0.19 11.6 0.0 1.6 2 0 0 2 2 2 0 NTPase AAA_18 PF13238.6 AHV91209.1 - 0.12 12.9 0.0 0.53 10.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.6 AHV91209.1 - 0.14 12.2 0.0 2.1 8.4 0.0 2.2 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.12 AHV91209.1 - 0.14 11.4 0.0 0.29 10.4 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin NACHT PF05729.12 AHV91209.1 - 0.2 11.6 0.7 1.3 8.9 0.1 2.1 1 1 1 2 2 2 0 NACHT domain TonB_dep_Rec PF00593.24 AHV91211.1 - 6.7e-72 243.9 19.5 6.7e-72 243.9 19.5 1.5 1 1 0 1 1 1 1 TonB dependent receptor Plug PF07715.15 AHV91211.1 - 4.4e-23 81.9 0.9 1.4e-22 80.3 0.9 1.9 2 0 0 2 2 2 1 TonB-dependent Receptor Plug Domain STN PF07660.14 AHV91211.1 - 3.2e-06 26.8 0.0 9.7e-06 25.3 0.0 1.9 1 0 0 1 1 1 1 Secretin and TonB N terminus short domain OEP PF02321.18 AHV91212.1 - 8.2e-47 159.4 33.1 2.8e-29 102.3 11.5 2.0 2 0 0 2 2 2 2 Outer membrane efflux protein PLDc_2 PF13091.6 AHV91213.1 - 6.9e-28 97.2 0.0 1e-27 96.6 0.0 1.3 1 0 0 1 1 1 1 PLD-like domain PLDc PF00614.22 AHV91213.1 - 4.5e-06 26.6 0.3 7.7e-06 25.9 0.3 1.4 1 0 0 1 1 1 1 Phospholipase D Active site motif Methyltransf_12 PF08242.12 AHV91214.1 - 0.03 15.0 0.0 0.065 14.0 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_31 PF13847.6 AHV91214.1 - 0.056 13.2 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_25 PF13649.6 AHV91214.1 - 0.066 13.9 0.0 0.14 12.9 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_11 PF08241.12 AHV91214.1 - 0.099 13.3 0.0 0.23 12.1 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain Bac_luciferase PF00296.20 AHV91215.1 - 3.3e-61 207.5 21.4 4e-61 207.2 21.4 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase EI24 PF07264.11 AHV91216.1 - 1.6e-15 57.8 41.8 1.6e-15 57.8 41.8 1.3 1 1 0 1 1 1 1 Etoposide-induced protein 2.4 (EI24) DUF4870 PF09685.10 AHV91216.1 - 0.016 15.3 7.5 0.016 15.3 7.5 2.9 2 1 1 3 3 3 0 Domain of unknown function (DUF4870) DUF4181 PF13789.6 AHV91216.1 - 1 9.7 4.4 0.5 10.6 1.3 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4181) Acetyltransf_4 PF13420.7 AHV91217.1 - 1.1e-15 58.1 0.0 1.2e-15 58.0 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 AHV91217.1 - 2e-13 50.6 0.0 2.6e-13 50.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.7 AHV91217.1 - 1.1e-09 39.1 0.0 1.4e-09 38.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 AHV91217.1 - 2.4e-08 33.8 0.1 8.5e-08 32.1 0.1 1.7 2 0 0 2 2 2 1 FR47-like protein Acetyltransf_10 PF13673.7 AHV91217.1 - 6.7e-07 29.3 0.0 7.8e-07 29.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 AHV91217.1 - 7.6e-06 26.3 0.1 1.1e-05 25.7 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 AHV91217.1 - 1.9e-05 24.7 0.0 3e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase GNAT_acetyltran PF12746.7 AHV91217.1 - 0.00016 21.4 0.0 0.0002 21.0 0.0 1.1 1 0 0 1 1 1 1 GNAT acetyltransferase Acetyltransf_8 PF13523.6 AHV91217.1 - 0.0015 18.2 0.0 0.0025 17.5 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain ILVD_EDD PF00920.21 AHV91218.1 - 2.4e-28 99.1 0.0 2.6e-28 98.9 0.0 1.0 1 0 0 1 1 1 1 Dehydratase family RNase_E_G PF10150.9 AHV91219.1 - 8.6e-99 330.3 0.0 1.3e-98 329.7 0.0 1.3 1 0 0 1 1 1 1 Ribonuclease E/G family S1 PF00575.23 AHV91219.1 - 0.00047 20.4 0.1 0.0023 18.2 0.0 2.2 2 0 0 2 2 2 1 S1 RNA binding domain ABC_tran PF00005.27 AHV91220.1 - 3.3e-28 98.9 0.0 4.2e-28 98.6 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 AHV91220.1 - 2.7e-09 37.3 3.1 0.00016 21.6 1.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF2813 PF11398.8 AHV91220.1 - 0.00012 21.5 0.1 0.00023 20.5 0.0 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF2813) AAA_30 PF13604.6 AHV91220.1 - 0.00021 21.0 0.0 0.00034 20.4 0.0 1.3 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 AHV91220.1 - 0.00021 21.1 0.0 0.00022 21.0 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 AHV91220.1 - 0.00023 20.8 0.1 0.00043 20.0 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_27 PF13514.6 AHV91220.1 - 0.0006 19.5 0.1 0.0011 18.7 0.1 1.3 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 AHV91220.1 - 0.0028 17.1 0.2 0.051 13.0 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain BCA_ABC_TP_C PF12399.8 AHV91220.1 - 0.0032 17.3 0.0 0.0066 16.3 0.0 1.5 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter MukB PF04310.12 AHV91220.1 - 0.0053 16.6 0.1 0.0093 15.8 0.1 1.3 1 0 0 1 1 1 1 MukB N-terminal AAA_23 PF13476.6 AHV91220.1 - 0.0054 17.3 0.1 0.0082 16.7 0.1 1.2 1 0 0 1 1 1 1 AAA domain ABC_ATPase PF09818.9 AHV91220.1 - 0.0057 15.5 0.2 1.3 7.8 0.3 2.1 2 0 0 2 2 2 2 Predicted ATPase of the ABC class AAA_22 PF13401.6 AHV91220.1 - 0.027 14.7 0.0 0.054 13.8 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 AHV91220.1 - 0.041 13.5 1.0 0.1 12.1 1.0 1.8 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 AHV91220.1 - 0.048 13.0 0.7 0.076 12.4 0.1 1.7 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI RsgA_GTPase PF03193.16 AHV91220.1 - 0.062 13.2 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase SRP54 PF00448.22 AHV91220.1 - 0.079 12.6 0.1 0.12 11.9 0.1 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Zeta_toxin PF06414.12 AHV91220.1 - 0.19 11.0 0.0 0.32 10.2 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin HpcH_HpaI PF03328.14 AHV91221.1 - 5.2e-32 110.8 0.2 6.9e-32 110.4 0.2 1.1 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family PCRF PF03462.18 AHV91222.1 - 3.1e-42 144.7 1.2 2.4e-41 141.7 0.0 2.1 2 0 0 2 2 2 1 PCRF domain RF-1 PF00472.20 AHV91222.1 - 1.6e-41 140.9 0.8 1.6e-41 140.9 0.8 1.4 2 0 0 2 2 2 1 RF-1 domain Tom37_C PF11801.8 AHV91222.1 - 0.029 14.4 1.6 0.043 13.8 1.6 1.2 1 0 0 1 1 1 0 Tom37 C-terminal domain Histone_HNS PF00816.21 AHV91223.1 - 2e-23 83.0 1.9 2.5e-23 82.7 1.9 1.1 1 0 0 1 1 1 1 H-NS histone family DUF4315 PF14193.6 AHV91223.1 - 0.0036 17.3 3.6 0.067 13.2 3.6 2.0 1 1 0 1 1 1 1 Domain of unknown function (DUF4315) GCR1_C PF12550.8 AHV91223.1 - 0.042 14.2 0.2 0.068 13.5 0.2 1.4 1 0 0 1 1 1 0 Transcriptional activator of glycolytic enzymes CLZ PF16526.5 AHV91223.1 - 0.08 13.3 0.2 0.12 12.7 0.2 1.3 1 0 0 1 1 1 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels GntP_permease PF02447.16 AHV91224.1 - 1.7e-43 149.0 20.0 1.9e-43 148.8 20.0 1.0 1 0 0 1 1 1 1 GntP family permease CitMHS PF03600.16 AHV91224.1 - 8.7e-13 48.1 18.4 1.3e-12 47.6 18.3 1.3 1 1 0 1 1 1 1 Citrate transporter Na_H_antiport_2 PF13726.6 AHV91224.1 - 0.00049 20.2 7.1 0.0011 19.1 7.1 1.6 1 0 0 1 1 1 1 Na+-H+ antiporter family adh_short_C2 PF13561.6 AHV91225.1 - 1.3e-50 172.1 1.0 2.7e-50 171.1 1.0 1.5 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 AHV91225.1 - 6.1e-47 159.6 0.0 7.9e-47 159.3 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 AHV91225.1 - 1.9e-06 27.9 1.3 7.3e-06 26.0 0.3 2.2 2 1 1 3 3 3 1 KR domain Epimerase PF01370.21 AHV91225.1 - 0.0043 16.5 0.3 0.009 15.5 0.3 1.5 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Methyltransf_25 PF13649.6 AHV91225.1 - 0.043 14.5 0.2 0.081 13.6 0.2 1.5 1 0 0 1 1 1 0 Methyltransferase domain NAD_binding_8 PF13450.6 AHV91225.1 - 0.31 11.3 2.5 0.28 11.4 0.4 2.1 2 1 0 2 2 2 0 NAD(P)-binding Rossmann-like domain DUF1513 PF07433.11 AHV91226.1 - 3.1e-109 364.8 0.0 3.5e-109 364.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1513) Apq12 PF12716.7 AHV91227.1 - 0.016 15.1 3.8 0.016 15.1 3.8 2.0 2 1 0 2 2 2 0 Nuclear pore assembly and biogenesis DUF2721 PF11026.8 AHV91227.1 - 4.6 7.1 7.2 1 9.3 3.3 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF2721) G_glu_transpept PF01019.21 AHV91228.1 - 4.5e-78 263.3 2.5 2.6e-57 194.8 1.1 2.0 1 1 1 2 2 2 2 Gamma-glutamyltranspeptidase Lipoprotein_9 PF03180.14 AHV91229.1 - 6.4e-61 205.5 0.0 7.1e-61 205.3 0.0 1.0 1 0 0 1 1 1 1 NLPA lipoprotein NMT1_2 PF13379.6 AHV91229.1 - 0.031 14.0 0.0 0.052 13.2 0.0 1.3 1 0 0 1 1 1 0 NMT1-like family CHAD PF05235.14 AHV91230.1 - 2.7e-45 155.1 0.6 1.3e-44 152.9 0.0 2.2 2 0 0 2 2 2 1 CHAD domain CYTH PF01928.21 AHV91230.1 - 4.5e-20 72.3 0.0 1.1e-19 71.1 0.0 1.6 2 0 0 2 2 2 1 CYTH domain OpcA_G6PD_assem PF10128.9 AHV91230.1 - 0.00057 19.5 0.2 0.00057 19.5 0.2 2.3 4 0 0 4 4 4 1 Glucose-6-phosphate dehydrogenase subunit GGDEF PF00990.21 AHV91231.1 - 1.4e-33 115.9 0.0 1.9e-33 115.5 0.0 1.2 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain AsnC_trans_reg PF01037.21 AHV91232.1 - 9.5e-24 83.2 0.0 1.5e-23 82.6 0.0 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_AsnC-type PF13404.6 AHV91232.1 - 4.1e-17 61.7 0.0 7.8e-17 60.8 0.0 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 AHV91232.1 - 2.4e-16 59.0 0.0 3.7e-16 58.4 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 AHV91232.1 - 0.024 14.6 0.0 0.054 13.5 0.0 1.6 1 0 0 1 1 1 0 HTH domain HTH_27 PF13463.6 AHV91232.1 - 0.048 14.2 0.0 0.1 13.1 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain GIDA_assoc PF13932.6 AHV91232.1 - 0.14 12.3 0.0 0.46 10.6 0.0 1.8 1 1 0 1 1 1 0 GidA associated domain LysR_substrate PF03466.20 AHV91233.1 - 8.6e-22 77.5 1.2 2.7e-21 75.9 0.1 1.9 2 0 0 2 2 2 1 LysR substrate binding domain HTH_1 PF00126.27 AHV91233.1 - 3.8e-17 62.0 1.0 5.7e-17 61.4 1.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family MarR_2 PF12802.7 AHV91233.1 - 0.011 15.6 0.1 0.099 12.6 0.0 2.3 2 0 0 2 2 2 0 MarR family Met_synt_B12 PF02965.17 AHV91234.1 - 1e-119 399.0 0.0 1.7e-119 398.3 0.0 1.4 1 0 0 1 1 1 1 Vitamin B12 dependent methionine synthase, activation domain S-methyl_trans PF02574.16 AHV91234.1 - 4.5e-77 259.5 0.0 8.9e-77 258.5 0.0 1.5 1 0 0 1 1 1 1 Homocysteine S-methyltransferase Pterin_bind PF00809.22 AHV91234.1 - 2.1e-53 181.5 0.0 4.1e-53 180.6 0.0 1.5 1 0 0 1 1 1 1 Pterin binding enzyme B12-binding_2 PF02607.17 AHV91234.1 - 4.9e-26 91.0 0.2 1.9e-25 89.1 0.2 2.2 1 0 0 1 1 1 1 B12 binding domain B12-binding PF02310.19 AHV91234.1 - 1.8e-15 57.0 0.9 8.3e-15 54.9 0.2 2.6 3 0 0 3 3 3 1 B12 binding domain CarboxypepD_reg PF13620.6 AHV91234.1 - 0.055 13.7 0.5 0.15 12.4 0.1 1.9 2 0 0 2 2 2 0 Carboxypeptidase regulatory-like domain BPD_transp_1 PF00528.22 AHV91235.1 - 4.7e-30 104.7 9.8 4.7e-30 104.7 9.8 2.5 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 AHV91235.1 - 4e-11 42.7 0.7 4e-11 42.7 0.7 3.4 4 1 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C SBF_like PF13593.6 AHV91236.1 - 7.1e-10 38.7 1.7 7.5e-10 38.6 1.7 1.0 1 0 0 1 1 1 1 SBF-like CPA transporter family (DUF4137) Fer2 PF00111.27 AHV91237.1 - 1.1e-10 41.3 3.0 1.9e-10 40.5 3.0 1.4 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain NAD_binding_1 PF00175.21 AHV91237.1 - 3.3e-07 30.9 0.0 9e-07 29.5 0.0 1.7 1 1 0 1 1 1 1 Oxidoreductase NAD-binding domain Fer2_4 PF13510.6 AHV91237.1 - 0.00096 19.2 0.1 0.0035 17.4 0.0 1.9 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain NAD_binding_6 PF08030.12 AHV91237.1 - 0.12 12.5 0.0 1 9.5 0.0 2.1 2 0 0 2 2 2 0 Ferric reductase NAD binding domain DNA_pol3_delta2 PF13177.6 AHV91238.1 - 1.5e-37 128.9 0.0 2.2e-37 128.4 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase III, delta subunit DNA_pol3_gamma3 PF12169.8 AHV91238.1 - 3.7e-19 69.1 0.3 1.3e-18 67.3 0.3 2.0 1 0 0 1 1 1 1 DNA polymerase III subunits gamma and tau domain III AAA PF00004.29 AHV91238.1 - 8e-11 42.5 0.0 1.4e-10 41.7 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 AHV91238.1 - 4e-07 29.9 0.0 2.4e-06 27.4 0.0 2.0 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain DNA_pol3_tau_5 PF12170.8 AHV91238.1 - 4.5e-06 26.8 0.0 8.1e-06 25.9 0.0 1.4 1 0 0 1 1 1 1 DNA polymerase III tau subunit V interacting with alpha AAA_22 PF13401.6 AHV91238.1 - 6.4e-05 23.2 0.1 0.00028 21.2 0.0 2.0 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.6 AHV91238.1 - 7.2e-05 23.2 0.1 7.2e-05 23.2 0.1 2.8 3 1 0 3 3 3 1 AAA ATPase domain AAA_18 PF13238.6 AHV91238.1 - 0.00047 20.7 0.1 0.00083 19.9 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.6 AHV91238.1 - 0.0014 18.7 0.0 0.0034 17.4 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.14 AHV91238.1 - 0.0031 17.5 0.1 0.045 13.8 0.1 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) TsaE PF02367.17 AHV91238.1 - 0.0043 17.1 0.0 0.0081 16.2 0.0 1.4 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_7 PF12775.7 AHV91238.1 - 0.018 14.6 0.0 1.8 8.0 0.0 2.2 2 0 0 2 2 2 0 P-loop containing dynein motor region ResIII PF04851.15 AHV91238.1 - 0.03 14.3 0.0 3.6 7.6 0.0 2.2 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit RsgA_GTPase PF03193.16 AHV91238.1 - 0.044 13.7 0.0 0.082 12.8 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase TIP49 PF06068.13 AHV91238.1 - 0.057 12.6 0.0 7.6 5.6 0.0 2.1 2 0 0 2 2 2 0 TIP49 P-loop domain PIF1 PF05970.14 AHV91238.1 - 0.068 12.3 0.0 0.11 11.7 0.0 1.1 1 0 0 1 1 1 0 PIF1-like helicase Rad17 PF03215.15 AHV91238.1 - 0.12 12.3 0.0 0.2 11.5 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_28 PF13521.6 AHV91238.1 - 0.12 12.6 1.3 0.36 11.1 0.4 2.1 2 0 0 2 2 2 0 AAA domain SKI PF01202.22 AHV91238.1 - 0.19 11.8 0.1 0.34 11.0 0.1 1.4 1 0 0 1 1 1 0 Shikimate kinase AAA_assoc_2 PF16193.5 AHV91238.1 - 0.35 11.2 1.3 17 5.8 0.1 2.7 1 1 1 2 2 2 0 AAA C-terminal domain DUF3646 PF12362.8 AHV91238.1 - 2.2 8.6 6.4 0.54 10.6 0.1 3.0 3 0 0 3 3 3 0 DNA polymerase III gamma and tau subunits C terminal FAD_binding_2 PF00890.24 AHV91239.1 - 7.1e-118 394.3 2.3 7.1e-118 394.3 2.3 1.4 2 0 0 2 2 2 1 FAD binding domain Succ_DH_flav_C PF02910.20 AHV91239.1 - 2.9e-38 130.7 0.1 4.9e-38 130.0 0.1 1.3 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.14 AHV91239.1 - 8.7e-07 28.4 1.4 4.2e-05 22.9 0.8 2.8 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 AHV91239.1 - 7e-06 25.9 1.7 8.6e-05 22.3 1.1 2.6 2 1 0 2 2 2 1 FAD dependent oxidoreductase Thi4 PF01946.17 AHV91239.1 - 0.00011 21.6 1.1 0.009 15.3 0.1 2.9 3 0 0 3 3 3 1 Thi4 family HI0933_like PF03486.14 AHV91239.1 - 0.00012 21.0 2.4 0.00052 18.8 0.5 2.6 3 0 0 3 3 3 1 HI0933-like protein GIDA PF01134.22 AHV91239.1 - 0.0013 17.9 3.9 0.0025 16.9 0.9 2.3 3 0 0 3 3 3 1 Glucose inhibited division protein A FAD_binding_3 PF01494.19 AHV91239.1 - 0.0018 17.6 2.0 0.002 17.4 0.6 1.8 2 0 0 2 2 2 1 FAD binding domain Lycopene_cycl PF05834.12 AHV91239.1 - 0.021 13.9 0.1 0.044 12.8 0.1 1.5 1 0 0 1 1 1 0 Lycopene cyclase protein Pyr_redox_3 PF13738.6 AHV91239.1 - 0.04 13.2 0.0 0.067 12.4 0.0 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 AHV91239.1 - 0.11 12.8 0.8 0.33 11.2 0.8 1.9 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain DUF3325 PF11804.8 AHV91240.1 - 6.2e-30 103.3 18.5 7.6e-30 103.1 18.5 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3325) BenE PF03594.13 AHV91241.1 - 3.3e-128 427.7 48.2 3.7e-128 427.5 48.2 1.0 1 0 0 1 1 1 1 Benzoate membrane transport protein Clp_N PF02861.20 AHV91242.1 - 3.9e-12 46.1 0.2 3.2e-11 43.2 0.5 2.2 2 0 0 2 2 2 1 Clp amino terminal domain, pathogenicity island component AAA PF00004.29 AHV91242.1 - 7.2e-09 36.2 0.0 3.9e-08 33.8 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 AHV91242.1 - 1.9e-07 31.6 0.3 5.9e-07 30.0 0.1 2.0 2 1 0 2 2 2 1 AAA ATPase domain TIP49 PF06068.13 AHV91242.1 - 0.0023 17.2 0.0 0.0036 16.6 0.0 1.2 1 0 0 1 1 1 1 TIP49 P-loop domain AAA_5 PF07728.14 AHV91242.1 - 0.024 14.6 0.0 0.048 13.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) IstB_IS21 PF01695.17 AHV91242.1 - 0.032 14.0 0.0 0.058 13.1 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_25 PF13481.6 AHV91242.1 - 0.033 13.8 0.0 0.062 12.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 AHV91242.1 - 0.036 13.6 0.0 0.071 12.6 0.0 1.6 1 0 0 1 1 1 0 P-loop containing dynein motor region NACHT PF05729.12 AHV91242.1 - 0.041 13.8 0.0 0.11 12.4 0.0 1.7 1 0 0 1 1 1 0 NACHT domain Mg_chelatase PF01078.21 AHV91242.1 - 0.043 13.2 0.0 0.085 12.2 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI NB-ARC PF00931.22 AHV91242.1 - 0.065 12.4 0.0 0.16 11.1 0.0 1.6 2 0 0 2 2 2 0 NB-ARC domain TniB PF05621.11 AHV91242.1 - 0.16 11.3 0.0 0.5 9.8 0.0 1.8 1 1 0 1 1 1 0 Bacterial TniB protein Sigma54_activat PF00158.26 AHV91242.1 - 0.17 11.6 0.0 0.38 10.4 0.0 1.6 1 1 0 1 1 1 0 Sigma-54 interaction domain AAA_22 PF13401.6 AHV91242.1 - 0.19 12.0 0.2 0.79 10.0 0.1 2.2 2 1 0 2 2 2 0 AAA domain TetR_C_13 PF16925.5 AHV91244.1 - 5e-12 45.8 0.2 7.8e-12 45.1 0.2 1.2 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_N PF00440.23 AHV91244.1 - 1.7e-10 40.5 0.8 3.4e-10 39.5 0.2 1.9 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family KfrA_N PF11740.8 AHV91244.1 - 0.0094 16.6 0.6 0.034 14.8 0.3 1.9 2 0 0 2 2 2 1 Plasmid replication region DNA-binding N-term Lip_A_acyltrans PF03279.13 AHV91245.1 - 2.6e-34 118.7 0.0 3e-34 118.5 0.0 1.0 1 0 0 1 1 1 1 Bacterial lipid A biosynthesis acyltransferase rve PF00665.26 AHV91246.1 - 1.5e-23 83.3 0.4 3.8e-23 81.9 0.0 1.7 2 0 0 2 2 2 1 Integrase core domain rve_3 PF13683.6 AHV91246.1 - 7.8e-19 67.2 4.2 8.2e-19 67.2 3.1 1.6 2 0 0 2 2 2 1 Integrase core domain PG_binding_2 PF08823.11 AHV91246.1 - 0.028 14.7 0.0 0.049 14.0 0.0 1.4 1 0 0 1 1 1 0 Putative peptidoglycan binding domain MelC1 PF06236.11 AHV91247.1 - 0.057 13.5 3.4 0.073 13.2 3.4 1.1 1 0 0 1 1 1 0 Tyrosinase co-factor MelC1 ANAPC3 PF12895.7 AHV91248.1 - 6.2e-07 29.6 4.0 0.00039 20.6 0.2 3.7 3 1 1 4 4 4 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_2 PF07719.17 AHV91248.1 - 0.0014 18.6 21.0 0.61 10.3 0.0 6.7 8 0 0 8 8 8 2 Tetratricopeptide repeat TPR_7 PF13176.6 AHV91248.1 - 0.0057 16.6 0.1 0.53 10.4 0.1 3.5 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_17 PF13431.6 AHV91248.1 - 0.0096 16.2 4.7 2 9.0 0.0 4.5 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_1 PF00515.28 AHV91248.1 - 0.024 14.4 6.4 2 8.4 0.3 4.9 5 0 0 5 5 5 0 Tetratricopeptide repeat TPR_8 PF13181.6 AHV91248.1 - 0.042 14.1 0.3 6.4 7.3 0.0 4.2 4 1 1 5 5 5 0 Tetratricopeptide repeat TPR_9 PF13371.6 AHV91248.1 - 0.17 12.1 10.9 20 5.4 3.1 4.3 3 1 1 4 4 4 0 Tetratricopeptide repeat TPR_19 PF14559.6 AHV91248.1 - 0.43 11.1 25.8 0.13 12.8 1.0 5.7 4 1 2 6 6 6 0 Tetratricopeptide repeat TPR_14 PF13428.6 AHV91248.1 - 2.4 9.2 32.1 2.6 9.1 0.5 8.3 3 2 3 7 7 7 0 Tetratricopeptide repeat TPR_6 PF13174.6 AHV91248.1 - 5 8.0 13.9 1.4e+02 3.4 0.1 6.7 7 0 0 7 7 7 0 Tetratricopeptide repeat ABC2_membrane PF01061.24 AHV91249.1 - 1.8e-23 83.0 17.3 2.2e-23 82.8 17.3 1.1 1 0 0 1 1 1 1 ABC-2 type transporter DUF445 PF04286.12 AHV91250.1 - 4.1e-103 346.0 0.1 4.7e-103 345.8 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF445) Nexin_C PF08628.12 AHV91250.1 - 0.027 15.0 0.2 0.35 11.5 0.0 2.4 2 0 0 2 2 2 0 Sorting nexin C terminal DnaI_N PF07319.11 AHV91250.1 - 0.13 12.9 0.1 0.75 10.5 0.0 2.2 2 1 0 2 2 2 0 Primosomal protein DnaI N-terminus CotH PF08757.11 AHV91250.1 - 0.18 11.3 0.3 0.54 9.7 0.1 1.8 1 1 1 2 2 2 0 CotH kinase protein RimM PF01782.18 AHV91251.1 - 3.5e-25 88.0 0.1 5.7e-25 87.3 0.1 1.3 1 0 0 1 1 1 1 RimM N-terminal domain Methyltrn_RNA_4 PF09936.9 AHV91251.1 - 0.00023 21.1 0.0 0.00039 20.3 0.0 1.3 1 0 0 1 1 1 1 SAM-dependent RNA methyltransferase PRC PF05239.16 AHV91251.1 - 0.0022 18.0 0.0 0.004 17.2 0.0 1.4 1 0 0 1 1 1 1 PRC-barrel domain Ring_hydroxyl_A PF00848.19 AHV91252.1 - 2e-16 60.6 0.5 3.3e-16 59.9 0.5 1.3 1 0 0 1 1 1 1 Ring hydroxylating alpha subunit (catalytic domain) Rieske PF00355.26 AHV91252.1 - 5.1e-06 26.4 0.9 1.2e-05 25.2 0.9 1.5 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain rve PF00665.26 AHV91253.1 - 9.9e-14 51.5 0.0 3.6e-12 46.5 0.0 2.1 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 AHV91253.1 - 9.7e-12 44.8 8.6 2e-11 43.8 8.6 1.5 1 0 0 1 1 1 1 HTH-like domain Rhomboid_SP PF12595.8 AHV91253.1 - 0.0032 16.9 0.3 1 8.7 0.0 2.3 1 1 0 2 2 2 2 Rhomboid serine protease Ribosomal_L31 PF01197.18 AHV91254.1 - 2.7e-28 98.0 0.3 3.4e-28 97.6 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein L31 Minor_capsid_1 PF10665.9 AHV91254.1 - 0.12 12.6 0.0 0.19 12.0 0.0 1.3 1 1 0 1 1 1 0 Minor capsid protein DSBA PF01323.20 AHV91255.1 - 2.7e-30 105.6 0.2 1.1e-27 97.1 0.2 2.0 1 1 0 1 1 1 1 DSBA-like thioredoxin domain Thioredoxin_5 PF13743.6 AHV91255.1 - 5.4e-05 22.9 0.0 7.3e-05 22.5 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_4 PF13462.6 AHV91255.1 - 0.00054 20.2 0.0 0.00081 19.6 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin PCuAC PF04314.13 AHV91256.1 - 3.4e-42 142.7 0.0 4.8e-42 142.2 0.0 1.2 1 0 0 1 1 1 1 Copper chaperone PCu(A)C FAA_hydrolase PF01557.18 AHV91257.1 - 7e-68 228.5 0.0 8.9e-68 228.2 0.0 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family DUF2325 PF10087.9 AHV91259.1 - 5.9e-19 68.0 0.0 1.4e-18 66.8 0.0 1.6 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2325) DAGK_cat PF00781.24 AHV91259.1 - 0.0017 17.9 0.3 0.0038 16.9 0.2 1.6 1 1 0 1 1 1 1 Diacylglycerol kinase catalytic domain DUF1330 PF07045.11 AHV91259.1 - 0.025 14.9 0.0 0.097 13.0 0.0 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF1330) NAD_kinase PF01513.21 AHV91259.1 - 0.072 12.3 0.1 0.094 11.9 0.1 1.1 1 0 0 1 1 1 0 ATP-NAD kinase DUF2064 PF09837.9 AHV91259.1 - 0.16 11.8 1.7 0.25 11.2 0.5 1.9 2 1 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2064) Cep57_MT_bd PF06657.13 AHV91259.1 - 0.33 11.4 4.0 11 6.6 0.7 2.3 2 0 0 2 2 2 0 Centrosome microtubule-binding domain of Cep57 MFS_1 PF07690.16 AHV91260.1 - 0.00031 19.8 12.8 0.00035 19.6 12.8 1.0 1 0 0 1 1 1 1 Major Facilitator Superfamily MFS_2 PF13347.6 AHV91260.1 - 0.076 11.5 10.2 0.11 11.0 10.2 1.4 1 1 0 1 1 1 0 MFS/sugar transport protein AbiEi_2 PF09952.9 AHV91261.1 - 0.00019 21.7 0.0 0.00034 20.9 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator, AbiEi antitoxin, Type IV TA system E3_binding PF02817.17 AHV91261.1 - 0.0085 16.4 0.0 0.028 14.8 0.0 1.9 2 0 0 2 2 2 1 e3 binding domain DUF1445 PF07286.12 AHV91262.1 - 7.6e-68 226.9 0.1 9.5e-68 226.6 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1445) BPD_transp_1 PF00528.22 AHV91263.1 - 1.2e-21 77.3 16.0 1.3e-21 77.1 16.0 1.0 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component DctM PF06808.12 AHV91265.1 - 6.4e-96 321.7 53.8 7.4e-96 321.5 53.8 1.0 1 0 0 1 1 1 1 Tripartite ATP-independent periplasmic transporter, DctM component CitMHS PF03600.16 AHV91265.1 - 0.037 13.2 64.8 0.19 10.9 32.0 2.3 1 1 1 2 2 2 0 Citrate transporter Bunya_G2 PF03563.13 AHV91265.1 - 0.26 10.5 0.7 0.56 9.4 0.7 1.5 1 0 0 1 1 1 0 Bunyavirus glycoprotein G2 BPD_transp_1 PF00528.22 AHV91266.1 - 2.1e-18 66.7 36.1 3.9e-11 43.0 10.8 3.9 2 2 2 4 4 4 2 Binding-protein-dependent transport system inner membrane component N_methyl PF07963.12 AHV91266.1 - 0.027 14.0 1.0 0.27 10.9 1.0 2.9 1 0 0 1 1 1 0 Prokaryotic N-terminal methylation motif MFS_1 PF07690.16 AHV91267.1 - 3.2e-29 102.0 56.2 3.2e-29 102.0 56.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_4 PF06779.14 AHV91267.1 - 5.5e-07 29.2 52.6 6.9e-07 28.9 52.6 1.0 1 0 0 1 1 1 1 Uncharacterised MFS-type transporter YbfB Sugar_tr PF00083.24 AHV91267.1 - 1.3e-05 24.2 11.6 1.3e-05 24.2 11.6 2.7 2 1 0 2 2 2 1 Sugar (and other) transporter FlxA PF14282.6 AHV91268.1 - 6.4e-07 29.3 31.4 9.5e-07 28.7 31.4 1.3 1 0 0 1 1 1 1 FlxA-like protein Dynamitin PF04912.14 AHV91268.1 - 0.00042 19.7 9.2 0.00044 19.7 9.2 1.0 1 0 0 1 1 1 1 Dynamitin Syntaxin-6_N PF09177.11 AHV91268.1 - 0.0024 18.4 5.2 0.003 18.1 5.2 1.1 1 0 0 1 1 1 1 Syntaxin 6, N-terminal DUF724 PF05266.14 AHV91268.1 - 0.0048 16.8 4.7 0.0051 16.7 4.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF724) OmpH PF03938.14 AHV91268.1 - 0.0064 16.8 16.7 0.0067 16.8 16.7 1.0 1 0 0 1 1 1 1 Outer membrane protein (OmpH-like) EzrA PF06160.12 AHV91268.1 - 0.0067 14.7 7.0 0.0072 14.6 7.0 1.0 1 0 0 1 1 1 1 Septation ring formation regulator, EzrA FapA PF03961.13 AHV91268.1 - 0.0068 15.1 5.1 0.0069 15.0 5.1 1.0 1 0 0 1 1 1 1 Flagellar Assembly Protein A DUF948 PF06103.11 AHV91268.1 - 0.009 16.3 7.4 0.015 15.6 7.4 1.4 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF948) End3 PF12761.7 AHV91268.1 - 0.0091 16.2 7.3 0.011 15.9 7.3 1.1 1 0 0 1 1 1 1 Actin cytoskeleton-regulatory complex protein END3 GAS PF13851.6 AHV91268.1 - 0.0095 15.3 11.7 0.01 15.2 11.7 1.1 1 0 0 1 1 1 1 Growth-arrest specific micro-tubule binding Halogen_Hydrol PF10112.9 AHV91268.1 - 0.011 15.7 0.7 0.011 15.7 0.7 2.0 1 1 1 2 2 2 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein Allexi_40kDa PF05549.11 AHV91268.1 - 0.013 15.1 6.7 0.014 14.9 6.7 1.1 1 0 0 1 1 1 0 Allexivirus 40kDa protein TMF_TATA_bd PF12325.8 AHV91268.1 - 0.014 15.6 12.7 0.017 15.3 12.7 1.1 1 0 0 1 1 1 0 TATA element modulatory factor 1 TATA binding DUF3552 PF12072.8 AHV91268.1 - 0.022 14.2 12.3 0.024 14.0 12.3 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) HemX PF04375.14 AHV91268.1 - 0.027 13.8 17.5 0.026 13.8 17.5 1.0 1 0 0 1 1 1 0 HemX, putative uroporphyrinogen-III C-methyltransferase Cob_adeno_trans PF01923.18 AHV91268.1 - 0.038 14.1 4.2 0.042 14.0 4.2 1.0 1 0 0 1 1 1 0 Cobalamin adenosyltransferase NPV_P10 PF05531.12 AHV91268.1 - 0.04 14.4 13.5 0.038 14.4 11.8 1.7 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein Cauli_AT PF03233.13 AHV91268.1 - 0.046 13.7 0.9 0.053 13.4 0.9 1.1 1 0 0 1 1 1 0 Aphid transmission protein DUF1664 PF07889.12 AHV91268.1 - 0.046 13.8 4.7 0.052 13.6 4.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) IL32 PF15225.6 AHV91268.1 - 0.054 13.8 2.5 0.085 13.2 2.5 1.4 1 1 0 1 1 1 0 Interleukin 32 Fib_alpha PF08702.10 AHV91268.1 - 0.064 13.4 11.2 0.084 13.0 11.2 1.2 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family Muted PF14942.6 AHV91268.1 - 0.066 13.5 8.0 0.088 13.2 8.0 1.2 1 0 0 1 1 1 0 Organelle biogenesis, Muted-like protein DUF2935 PF11155.8 AHV91268.1 - 0.084 13.2 5.8 0.095 13.0 5.8 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF2935) DUF43 PF01861.16 AHV91268.1 - 0.088 12.0 0.1 0.09 12.0 0.1 1.1 1 0 0 1 1 1 0 Branched-chain polyamine synthase A C-terminal domain Prominin PF05478.11 AHV91268.1 - 0.1 10.6 7.8 0.1 10.5 7.8 1.0 1 0 0 1 1 1 0 Prominin DUF4140 PF13600.6 AHV91268.1 - 0.12 12.9 11.3 0.043 14.3 2.7 2.1 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) Laminin_II PF06009.12 AHV91268.1 - 0.13 12.3 10.2 0.15 12.1 10.2 1.1 1 0 0 1 1 1 0 Laminin Domain II DUF3450 PF11932.8 AHV91268.1 - 0.13 11.5 16.5 0.15 11.4 16.5 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) PRKG1_interact PF15898.5 AHV91268.1 - 0.15 13.0 12.2 0.23 12.4 12.2 1.3 1 0 0 1 1 1 0 cGMP-dependent protein kinase interacting domain HalX PF08663.10 AHV91268.1 - 0.18 12.1 7.7 1.1 9.6 1.8 2.2 1 1 1 2 2 2 0 HalX domain CCDC-167 PF15188.6 AHV91268.1 - 0.19 12.1 7.4 0.26 11.7 7.4 1.2 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 167 YlqD PF11068.8 AHV91268.1 - 0.19 12.1 20.3 0.23 11.9 20.3 1.1 1 0 0 1 1 1 0 YlqD protein Translin PF01997.16 AHV91268.1 - 0.22 11.5 6.7 0.28 11.1 6.7 1.2 1 0 0 1 1 1 0 Translin family Seryl_tRNA_N PF02403.22 AHV91268.1 - 0.23 11.7 9.7 0.29 11.4 9.7 1.1 1 0 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain DUF4837 PF16125.5 AHV91268.1 - 0.24 10.4 5.6 0.28 10.2 5.6 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4837) Nup88 PF10168.9 AHV91268.1 - 0.24 9.2 11.2 0.26 9.1 11.2 1.0 1 0 0 1 1 1 0 Nuclear pore component DUF4055 PF13264.6 AHV91268.1 - 0.26 11.4 7.7 0.3 11.2 7.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4055) Tweety PF04906.13 AHV91268.1 - 0.29 9.8 6.7 0.33 9.6 6.7 1.0 1 0 0 1 1 1 0 Tweety Fmp27_WPPW PF10359.9 AHV91268.1 - 0.29 9.9 9.7 0.32 9.8 9.7 1.0 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain HlyD_2 PF12700.7 AHV91268.1 - 0.32 9.7 3.9 0.36 9.5 3.9 1.0 1 0 0 1 1 1 0 HlyD family secretion protein ZYG-11_interact PF05884.12 AHV91268.1 - 0.32 10.4 6.5 0.36 10.2 6.5 1.0 1 0 0 1 1 1 0 Interactor of ZYG-11 YabA PF06156.13 AHV91268.1 - 0.37 11.4 9.8 0.6 10.8 9.8 1.3 1 0 0 1 1 1 0 Initiation control protein YabA FemAB PF02388.16 AHV91268.1 - 0.43 9.4 10.2 0.48 9.3 10.2 1.0 1 0 0 1 1 1 0 FemAB family HisKA PF00512.25 AHV91268.1 - 0.47 10.5 7.0 4.4 7.4 1.2 2.1 1 1 1 2 2 2 0 His Kinase A (phospho-acceptor) domain FlaC_arch PF05377.11 AHV91268.1 - 0.51 10.8 4.7 4.9 7.6 0.9 2.3 1 1 1 2 2 2 0 Flagella accessory protein C (FlaC) T2SSM PF04612.12 AHV91268.1 - 0.53 10.3 16.3 0.71 9.9 16.3 1.2 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein M DUF5320 PF17253.2 AHV91268.1 - 0.68 11.0 11.1 2.1 9.5 0.6 2.1 1 1 1 2 2 2 0 Family of unknown function (DUF5320) XhlA PF10779.9 AHV91268.1 - 0.77 10.0 4.9 0.49 10.6 1.7 1.9 1 1 1 2 2 2 0 Haemolysin XhlA Exonuc_VII_L PF02601.15 AHV91268.1 - 0.79 9.2 10.3 0.84 9.2 10.3 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit ADIP PF11559.8 AHV91268.1 - 0.84 9.7 20.7 7.1 6.7 18.2 1.9 1 1 0 1 1 1 0 Afadin- and alpha -actinin-Binding TMPIT PF07851.13 AHV91268.1 - 1.1 8.5 9.4 1.2 8.4 9.4 1.0 1 0 0 1 1 1 0 TMPIT-like protein DASH_Dam1 PF08653.10 AHV91268.1 - 1.2 8.9 4.0 3.6 7.5 0.3 2.3 2 1 0 2 2 2 0 DASH complex subunit Dam1 CLZ PF16526.5 AHV91268.1 - 1.3 9.4 14.4 0.64 10.4 4.6 2.3 1 1 1 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels DUF2203 PF09969.9 AHV91268.1 - 1.3 9.7 7.7 1.6 9.5 7.7 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) 5_nucleotid PF05761.14 AHV91268.1 - 1.4 7.8 7.4 1.4 7.7 7.4 1.0 1 0 0 1 1 1 0 5' nucleotidase family CDK2AP PF09806.9 AHV91268.1 - 1.5 8.8 13.4 1.6 8.7 13.4 1.1 1 0 0 1 1 1 0 Cyclin-dependent kinase 2-associated protein Gon7 PF08738.10 AHV91268.1 - 1.7 8.8 15.5 0.66 10.1 7.5 2.0 1 1 1 2 2 2 0 Gon7 family ACCA PF03255.14 AHV91268.1 - 1.7 8.5 7.0 2.1 8.2 7.0 1.2 1 0 0 1 1 1 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit DUF4446 PF14584.6 AHV91268.1 - 1.9 8.5 7.1 3.2 7.7 7.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF4446) Utp12 PF04003.12 AHV91268.1 - 2.6 8.4 14.1 0.64 10.4 3.2 2.1 1 1 1 2 2 2 0 Dip2/Utp12 Family Prefoldin PF02996.17 AHV91268.1 - 2.6 8.0 15.7 1.5e+02 2.3 15.7 2.2 1 1 0 1 1 1 0 Prefoldin subunit Spc24 PF08286.11 AHV91268.1 - 2.9 8.2 14.9 1.1e+02 3.1 14.9 2.1 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 TRPM_tetra PF16519.5 AHV91268.1 - 3.2 7.9 11.9 1.5 9.0 1.7 2.1 1 1 1 2 2 2 0 Tetramerisation domain of TRPM PP_kinase_N PF13089.6 AHV91268.1 - 3.8 7.9 10.4 7.3 7.0 7.7 1.9 1 1 1 2 2 2 0 Polyphosphate kinase N-terminal domain ZapB PF06005.12 AHV91268.1 - 4 8.0 21.0 10 6.7 21.0 1.6 1 1 0 1 1 1 0 Cell division protein ZapB Swi5 PF07061.11 AHV91268.1 - 4 7.6 12.2 51 4.1 12.2 2.1 1 1 0 1 1 1 0 Swi5 DUF4407 PF14362.6 AHV91268.1 - 4.3 6.6 15.5 12 5.1 15.5 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) EMP24_GP25L PF01105.24 AHV91268.1 - 4.3 7.2 9.7 1 9.3 4.7 1.9 1 1 1 2 2 2 0 emp24/gp25L/p24 family/GOLD TolA_bind_tri PF16331.5 AHV91268.1 - 4.5 7.4 28.8 2.2 8.4 13.7 2.3 1 1 1 2 2 2 0 TolA binding protein trimerisation DUF3573 PF12097.8 AHV91268.1 - 6 5.6 17.2 0.07 12.0 4.8 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3573) Csm1_N PF18504.1 AHV91268.1 - 9.9 6.6 17.2 18 5.7 7.9 2.2 1 1 1 2 2 2 0 Csm1 N-terminal domain MlaC PF05494.12 AHV91270.1 - 6e-54 182.3 0.3 6.9e-54 182.1 0.3 1.0 1 0 0 1 1 1 1 MlaC protein Catalase-rel PF06628.12 AHV91270.1 - 0.016 15.4 0.0 0.042 14.1 0.0 1.7 1 0 0 1 1 1 0 Catalase-related immune-responsive DUF4864 PF16156.5 AHV91270.1 - 0.033 14.9 0.0 0.06 14.0 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4864) T3SS_LEE_assoc PF13327.6 AHV91270.1 - 0.041 13.9 0.0 0.19 11.7 0.0 1.9 2 0 0 2 2 2 0 Type III secretion system subunit Urease_alpha PF00449.20 AHV91270.1 - 0.099 13.0 0.0 0.18 12.2 0.0 1.4 1 0 0 1 1 1 0 Urease alpha-subunit, N-terminal domain PhoD_N PF16655.5 AHV91270.1 - 0.15 12.6 0.0 1.7 9.3 0.0 2.2 2 0 0 2 2 2 0 PhoD-like phosphatase, N-terminal domain TetR_C_9 PF14514.6 AHV91270.1 - 0.17 12.0 0.0 0.48 10.6 0.0 1.7 1 1 1 2 2 2 0 Tetracyclin repressor-like, C-terminal domain Response_reg PF00072.24 AHV91271.1 - 1.9e-27 95.7 0.1 2.6e-27 95.2 0.1 1.2 1 0 0 1 1 1 1 Response regulator receiver domain HTH_8 PF02954.19 AHV91271.1 - 0.0022 17.7 0.2 0.0022 17.7 0.2 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, Fis family Phage_AlpA PF05930.12 AHV91271.1 - 0.17 11.7 0.0 0.33 10.8 0.0 1.4 1 0 0 1 1 1 0 Prophage CP4-57 regulatory protein (AlpA) YcgR PF07317.12 AHV91272.1 - 9.2e-26 89.8 0.0 1.8e-25 88.9 0.0 1.5 1 0 0 1 1 1 1 Flagellar regulator YcgR PilZ PF07238.14 AHV91272.1 - 8.9e-09 35.6 0.2 1.8e-08 34.6 0.2 1.5 1 0 0 1 1 1 1 PilZ domain ABC_tran PF00005.27 AHV91273.1 - 1.3e-26 93.7 0.0 1.6e-26 93.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.8 AHV91273.1 - 4e-11 42.6 0.2 8.1e-11 41.6 0.2 1.6 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_21 PF13304.6 AHV91273.1 - 1.5e-05 24.9 1.2 0.0014 18.6 0.1 2.1 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 AHV91273.1 - 0.0001 22.9 0.2 0.00015 22.3 0.2 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 AHV91273.1 - 0.00027 20.6 0.1 0.00058 19.5 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 AHV91273.1 - 0.00049 20.0 0.1 0.00092 19.1 0.1 1.4 1 0 0 1 1 1 1 RsgA GTPase MMR_HSR1 PF01926.23 AHV91273.1 - 0.00056 20.0 0.0 0.0012 18.9 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase SMC_N PF02463.19 AHV91273.1 - 0.00068 19.1 0.2 0.024 14.1 0.1 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 AHV91273.1 - 0.0016 18.7 0.1 0.0073 16.6 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_27 PF13514.6 AHV91273.1 - 0.0026 17.4 0.0 0.0044 16.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 AHV91273.1 - 0.012 15.4 0.9 0.032 14.0 0.9 1.7 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 AHV91273.1 - 0.013 15.9 0.2 0.025 15.0 0.2 1.5 1 1 0 1 1 1 0 AAA ATPase domain Dynamin_N PF00350.23 AHV91273.1 - 0.037 14.1 0.1 0.059 13.4 0.1 1.3 1 0 0 1 1 1 0 Dynamin family AAA_33 PF13671.6 AHV91273.1 - 0.042 14.0 0.2 0.1 12.8 0.1 1.7 2 0 0 2 2 2 0 AAA domain FeoB_N PF02421.18 AHV91273.1 - 0.096 12.2 0.1 0.17 11.4 0.1 1.4 1 0 0 1 1 1 0 Ferrous iron transport protein B ATPase_2 PF01637.18 AHV91273.1 - 0.12 12.3 0.0 0.19 11.6 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea ABC_ATPase PF09818.9 AHV91273.1 - 0.13 11.1 0.4 0.91 8.2 0.1 2.0 2 0 0 2 2 2 0 Predicted ATPase of the ABC class NB-ARC PF00931.22 AHV91273.1 - 0.14 11.3 0.1 0.45 9.7 0.1 1.7 2 0 0 2 2 2 0 NB-ARC domain AAA_28 PF13521.6 AHV91273.1 - 0.14 12.4 0.0 0.26 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 AHV91273.1 - 0.16 11.5 2.7 1.8 8.1 2.7 2.2 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.6 AHV91273.1 - 0.21 11.3 0.2 0.28 10.8 0.2 1.1 1 0 0 1 1 1 0 AAA ATPase domain AAA_14 PF13173.6 AHV91273.1 - 0.21 11.6 0.0 0.77 9.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain Ribosomal_S7 PF00177.21 AHV91274.1 - 1.6e-65 219.3 2.7 1.7e-65 219.2 2.7 1.0 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e DUF1485 PF07364.12 AHV91275.1 - 1.9e-74 250.6 0.2 2.3e-74 250.2 0.2 1.1 1 0 0 1 1 1 1 Metallopeptidase family M81 MlrC_C PF07171.12 AHV91275.1 - 8.4e-11 42.3 0.0 1.3e-10 41.7 0.0 1.2 1 0 0 1 1 1 1 MlrC C-terminus DAO PF01266.24 AHV91275.1 - 0.07 12.7 0.7 0.29 10.7 0.1 2.0 1 1 1 2 2 2 0 FAD dependent oxidoreductase Robl_LC7 PF03259.17 AHV91275.1 - 0.14 12.0 0.1 0.36 10.6 0.1 1.6 1 0 0 1 1 1 0 Roadblock/LC7 domain DUF302 PF03625.14 AHV91276.1 - 1.5e-20 72.8 0.0 2.4e-20 72.2 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF302 LysR_substrate PF03466.20 AHV91277.1 - 4.5e-30 104.6 4.4 4.5e-30 104.6 4.4 1.6 2 0 0 2 2 2 1 LysR substrate binding domain HTH_1 PF00126.27 AHV91277.1 - 9.6e-18 63.9 0.6 7.1e-17 61.1 0.9 2.2 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family MarR_2 PF12802.7 AHV91277.1 - 0.086 12.7 0.2 0.18 11.7 0.2 1.5 1 0 0 1 1 1 0 MarR family HTH_24 PF13412.6 AHV91277.1 - 0.12 12.0 0.0 0.22 11.1 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding P22_Cro PF14549.6 AHV91277.1 - 0.18 11.7 0.1 0.37 10.7 0.1 1.5 1 0 0 1 1 1 0 DNA-binding transcriptional regulator Cro ABC-3 PF00950.17 AHV91278.1 - 5.4e-51 173.6 27.7 6.1e-51 173.4 27.7 1.0 1 0 0 1 1 1 1 ABC 3 transport family Sigma70_r4_2 PF08281.12 AHV91280.1 - 3.6e-16 58.6 0.5 1.4e-15 56.7 0.1 2.1 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r2 PF04542.14 AHV91280.1 - 1.1e-12 47.5 0.3 2.1e-12 46.6 0.3 1.4 1 0 0 1 1 1 1 Sigma-70 region 2 Sigma70_r4 PF04545.16 AHV91280.1 - 2.3e-10 39.8 0.0 9.2e-10 37.9 0.0 2.0 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_ECF PF07638.11 AHV91280.1 - 0.00061 19.7 0.2 0.0012 18.8 0.2 1.5 1 1 0 1 1 1 1 ECF sigma factor HTH_10 PF04967.12 AHV91280.1 - 0.0043 16.8 0.0 0.0083 15.9 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain HTH_31 PF13560.6 AHV91280.1 - 0.013 15.9 1.4 0.068 13.5 1.7 2.1 2 1 0 2 2 2 0 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 AHV91280.1 - 0.015 14.7 0.0 0.036 13.5 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_24 PF13412.6 AHV91280.1 - 0.016 14.7 0.0 0.034 13.7 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_Mga PF08280.11 AHV91280.1 - 0.03 14.3 0.0 0.059 13.4 0.0 1.4 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_28 PF13518.6 AHV91280.1 - 0.037 14.2 0.0 0.1 12.7 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.6 AHV91280.1 - 0.037 13.8 3.0 0.052 13.4 0.0 2.5 3 1 0 3 3 3 0 Homeodomain-like domain HTH_38 PF13936.6 AHV91280.1 - 0.058 13.2 0.0 0.14 11.9 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Fe_dep_repress PF01325.19 AHV91280.1 - 0.064 13.5 0.0 0.13 12.5 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_AsnC-type PF13404.6 AHV91280.1 - 0.073 12.9 0.0 0.073 12.9 0.0 2.0 3 0 0 3 3 3 0 AsnC-type helix-turn-helix domain DUF134 PF02001.16 AHV91280.1 - 0.11 13.0 0.0 0.24 12.0 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function DUF134 Aminotran_3 PF00202.21 AHV91281.1 - 1.5e-122 409.2 0.0 1.7e-122 409.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 AHV91281.1 - 4.3e-05 22.9 0.0 7.6e-05 22.0 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 AHV91281.1 - 0.0047 16.3 0.1 0.0076 15.6 0.1 1.5 1 0 0 1 1 1 1 Beta-eliminating lyase T2SSE PF00437.20 AHV91282.1 - 7.6e-44 149.8 1.6 8.8e-44 149.6 1.6 1.0 1 0 0 1 1 1 1 Type II/IV secretion system protein ABC_tran PF00005.27 AHV91283.1 - 6.7e-35 120.6 0.0 1.1e-34 119.8 0.0 1.4 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 AHV91283.1 - 1.1e-13 51.2 0.1 3.3e-13 49.6 0.0 2.0 2 0 0 2 2 1 1 TOBE domain AAA_21 PF13304.6 AHV91283.1 - 2e-08 34.4 0.2 0.00047 20.1 0.0 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 AHV91283.1 - 9.5e-05 22.7 0.1 0.0018 18.5 0.1 2.5 1 1 1 2 2 2 1 AAA domain SMC_N PF02463.19 AHV91283.1 - 0.00014 21.4 1.2 0.0016 17.9 1.2 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 AHV91283.1 - 0.00023 21.1 0.4 0.002 18.1 0.1 2.1 2 0 0 2 2 2 1 RsgA GTPase Peptidase_S3 PF00944.19 AHV91283.1 - 0.00042 20.2 0.0 0.00089 19.1 0.0 1.5 1 0 0 1 1 1 1 Alphavirus core protein AAA_33 PF13671.6 AHV91283.1 - 0.00097 19.3 0.0 0.0024 18.0 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 AHV91283.1 - 0.0012 18.5 0.0 0.003 17.3 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain Mg_chelatase PF01078.21 AHV91283.1 - 0.014 14.8 0.0 0.03 13.7 0.0 1.6 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_16 PF13191.6 AHV91283.1 - 0.025 15.0 0.1 0.06 13.7 0.1 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.6 AHV91283.1 - 0.046 13.4 0.3 0.16 11.6 0.3 1.8 1 1 0 1 1 1 0 AAA domain cobW PF02492.19 AHV91283.1 - 0.05 13.2 0.4 1.9 8.0 0.1 2.2 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain MMR_HSR1 PF01926.23 AHV91283.1 - 0.054 13.6 0.1 0.18 11.9 0.1 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase DUF87 PF01935.17 AHV91283.1 - 0.062 13.4 0.1 0.15 12.1 0.1 1.6 1 0 0 1 1 1 0 Helicase HerA, central domain ABC_ATPase PF09818.9 AHV91283.1 - 0.086 11.6 0.1 6.6 5.4 0.0 2.4 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA_19 PF13245.6 AHV91283.1 - 0.12 12.7 0.1 0.82 10.0 0.1 2.1 1 1 0 1 1 1 0 AAA domain G-alpha PF00503.20 AHV91283.1 - 0.13 11.4 0.0 0.21 10.7 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit AAA_28 PF13521.6 AHV91283.1 - 0.13 12.5 0.1 0.52 10.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.12 AHV91283.1 - 0.16 11.2 0.0 0.31 10.3 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_23 PF13476.6 AHV91283.1 - 0.17 12.3 0.1 0.37 11.3 0.0 1.5 2 0 0 2 2 1 0 AAA domain YicC_N PF03755.13 AHV91284.1 - 1.8e-36 125.9 0.0 3.6e-36 124.9 0.0 1.5 1 0 0 1 1 1 1 YicC-like family, N-terminal region DUF1732 PF08340.11 AHV91284.1 - 2.8e-33 113.7 0.2 5.2e-33 112.9 0.2 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1732) PAS_7 PF12860.7 AHV91284.1 - 0.0013 18.9 0.3 0.011 15.9 0.0 2.5 3 0 0 3 3 3 1 PAS fold TetR_C_34 PF17929.1 AHV91284.1 - 0.0027 17.8 0.3 0.017 15.2 0.1 2.2 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain EspB_PE PF18625.1 AHV91284.1 - 0.24 11.9 2.6 0.49 10.9 0.0 2.8 4 0 0 4 4 4 0 ESX-1 secreted protein B PE domain tRNA-synt_2c PF01411.19 AHV91285.1 - 2.6e-111 372.8 0.0 3.4e-111 372.4 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) DHHA1 PF02272.19 AHV91285.1 - 3.4e-27 95.5 5.7 7e-27 94.5 5.7 1.6 1 0 0 1 1 1 1 DHHA1 domain tRNA_SAD PF07973.14 AHV91285.1 - 5.9e-17 61.5 2.4 8.6e-17 61.0 0.9 2.1 2 0 0 2 2 2 1 Threonyl and Alanyl tRNA synthetase second additional domain ROS_MUCR PF05443.11 AHV91285.1 - 0.093 12.8 0.1 9.4 6.3 0.0 2.6 2 0 0 2 2 2 0 ROS/MUCR transcriptional regulator protein Swi5 PF07061.11 AHV91285.1 - 0.15 12.1 0.8 0.39 10.8 0.2 2.0 2 0 0 2 2 2 0 Swi5 PCB_OB PF17092.5 AHV91285.1 - 0.16 12.7 1.4 15 6.4 0.0 3.7 3 1 0 3 3 3 0 Penicillin-binding protein OB-like domain TolA_bind_tri PF16331.5 AHV91285.1 - 1.7 8.7 5.4 0.32 11.1 0.2 2.5 4 0 0 4 4 4 0 TolA binding protein trimerisation YscO PF07321.12 AHV91285.1 - 2.2 8.2 8.7 0.85 9.6 4.4 2.3 2 0 0 2 2 2 0 Type III secretion protein YscO CTP_transf_1 PF01148.20 AHV91287.1 - 5.4e-51 173.9 14.9 6.4e-51 173.7 14.9 1.1 1 0 0 1 1 1 1 Cytidylyltransferase family CarS-like PF01864.17 AHV91287.1 - 0.004 17.2 0.5 0.0086 16.1 0.5 1.6 1 0 0 1 1 1 1 CDP-archaeol synthase 4HBT PF03061.22 AHV91289.1 - 8.3e-18 64.5 0.9 1.4e-17 63.8 0.9 1.3 1 0 0 1 1 1 1 Thioesterase superfamily bMG6 PF17962.1 AHV91289.1 - 0.017 15.2 0.0 0.024 14.8 0.0 1.4 1 0 0 1 1 1 0 Bacterial macroglobulin domain 6 Hexapep PF00132.24 AHV91290.1 - 1.1e-12 47.2 10.6 1.8e-06 27.4 2.7 2.9 2 1 0 2 2 2 2 Bacterial transferase hexapeptide (six repeats) PglD_N PF17836.1 AHV91290.1 - 6.9e-07 29.8 0.0 1.4e-06 28.9 0.0 1.6 1 0 0 1 1 1 1 PglD N-terminal domain Hexapep_2 PF14602.6 AHV91290.1 - 6e-05 22.7 2.6 6e-05 22.7 2.6 4.7 2 1 1 4 4 4 2 Hexapeptide repeat of succinyl-transferase CoA_binding_3 PF13727.6 AHV91290.1 - 0.047 13.7 0.0 0.075 13.0 0.0 1.2 1 0 0 1 1 1 0 CoA-binding domain FTR1 PF03239.14 AHV91291.1 - 0.23 10.6 4.5 0.32 10.1 4.5 1.1 1 0 0 1 1 1 0 Iron permease FTR1 family TonB_C PF03544.14 AHV91292.1 - 5.7e-12 45.9 0.0 7.1e-12 45.6 0.0 1.1 1 0 0 1 1 1 1 Gram-negative bacterial TonB protein C-terminal TonB_2 PF13103.6 AHV91292.1 - 0.00073 19.7 0.0 0.0008 19.6 0.0 1.2 1 0 0 1 1 1 1 TonB C terminal Cupin_2 PF07883.11 AHV91293.1 - 0.00018 21.1 1.8 0.00031 20.4 1.8 1.3 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 AHV91293.1 - 0.0077 16.1 0.3 0.014 15.3 0.3 1.4 1 0 0 1 1 1 1 AraC-like ligand binding domain PhaC_N PF07167.13 AHV91294.1 - 2.8e-63 212.6 0.0 4e-63 212.2 0.0 1.2 1 0 0 1 1 1 1 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus Abhydrolase_1 PF00561.20 AHV91294.1 - 3.2e-20 72.9 0.1 4.5e-20 72.4 0.1 1.2 1 0 0 1 1 1 1 alpha/beta hydrolase fold DUF3141 PF11339.8 AHV91294.1 - 0.009 14.5 0.0 0.067 11.6 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF3141) Epimerase PF01370.21 AHV91295.1 - 2.5e-54 184.3 0.0 3e-54 184.0 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 AHV91295.1 - 1.8e-49 168.9 0.0 2.6e-49 168.4 0.0 1.1 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 AHV91295.1 - 2.5e-22 79.2 0.0 5.4e-22 78.1 0.0 1.5 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 AHV91295.1 - 1.9e-15 56.8 0.0 7.2e-15 54.9 0.0 1.7 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 AHV91295.1 - 2.8e-07 30.0 0.0 5.2e-07 29.1 0.0 1.5 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.6 AHV91295.1 - 3.5e-06 27.0 0.0 0.00017 21.6 0.0 2.2 2 0 0 2 2 2 1 NAD(P)H-binding RmlD_sub_bind PF04321.17 AHV91295.1 - 0.00011 21.4 0.0 0.00016 20.9 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain adh_short PF00106.25 AHV91295.1 - 0.0044 16.5 0.0 0.009 15.5 0.0 1.5 1 0 0 1 1 1 1 short chain dehydrogenase NmrA PF05368.13 AHV91295.1 - 0.0047 16.5 0.0 0.066 12.8 0.0 2.2 2 0 0 2 2 2 1 NmrA-like family Amidohydro_2 PF04909.14 AHV91296.1 - 5.1e-40 138.1 5.4 5.7e-40 137.9 5.4 1.0 1 0 0 1 1 1 1 Amidohydrolase adh_short_C2 PF13561.6 AHV91297.1 - 9.1e-57 192.3 11.0 1e-56 192.1 11.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 AHV91297.1 - 2.2e-43 148.0 6.2 2.7e-43 147.7 6.2 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 AHV91297.1 - 0.0043 17.0 2.4 0.0062 16.5 2.4 1.3 1 0 0 1 1 1 1 KR domain Methyltransf_PK PF05891.12 AHV91297.1 - 0.016 14.8 0.1 0.022 14.3 0.1 1.3 1 0 0 1 1 1 0 AdoMet dependent proline di-methyltransferase AMP-binding PF00501.28 AHV91298.1 - 1e-43 149.6 1.0 1.3e-43 149.2 1.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme MFS_1 PF07690.16 AHV91299.1 - 3.1e-34 118.5 36.5 3.9e-34 118.1 36.5 1.1 1 0 0 1 1 1 1 Major Facilitator Superfamily MFS_1_like PF12832.7 AHV91299.1 - 0.0057 15.6 11.8 0.28 10.0 8.2 2.5 1 1 2 3 3 3 2 MFS_1 like family Gluconate_2-dh3 PF13618.6 AHV91300.1 - 1.1e-24 87.2 0.0 1.3e-24 86.9 0.0 1.0 1 0 0 1 1 1 1 Gluconate 2-dehydrogenase subunit 3 Peptidase_M50 PF02163.22 AHV91301.1 - 1.4e-11 44.2 7.2 3e-07 30.0 0.9 3.1 2 1 1 3 3 3 3 Peptidase family M50 TctC PF03401.14 AHV91302.1 - 4.8e-69 232.5 1.1 6e-69 232.1 1.1 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor DHDPS PF00701.22 AHV91303.1 - 6.7e-31 107.1 0.0 8e-31 106.8 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family QSregVF_b PF12843.7 AHV91304.1 - 5.6e-31 106.2 0.1 6.2e-31 106.1 0.1 1.0 1 0 0 1 1 1 1 Putative quorum-sensing-regulated virulence factor Cupin_7 PF12973.7 AHV91305.1 - 1.5e-11 44.0 0.0 2.1e-11 43.6 0.0 1.2 1 0 0 1 1 1 1 ChrR Cupin-like domain Cupin_2 PF07883.11 AHV91305.1 - 0.0012 18.6 0.0 0.0023 17.6 0.0 1.4 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 AHV91305.1 - 0.014 15.3 0.5 0.02 14.8 0.5 1.2 1 0 0 1 1 1 0 AraC-like ligand binding domain ECH_1 PF00378.20 AHV91306.1 - 0.00064 19.1 0.0 0.00066 19.1 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase Iso_dh PF00180.20 AHV91306.1 - 0.1 11.7 0.0 0.11 11.6 0.0 1.1 1 0 0 1 1 1 0 Isocitrate/isopropylmalate dehydrogenase MinE PF03776.14 AHV91307.1 - 2e-26 91.8 0.3 2.2e-26 91.6 0.3 1.0 1 0 0 1 1 1 1 Septum formation topological specificity factor MinE CutA1 PF03091.15 AHV91308.1 - 2.2e-29 101.2 0.0 2.5e-29 101.0 0.0 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein MrpF_PhaF PF04066.13 AHV91309.1 - 7.7e-19 67.8 4.8 7.7e-19 67.8 4.8 1.6 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) DUF1656 PF07869.12 AHV91309.1 - 1.4 8.9 7.2 0.67 10.0 0.2 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF1656) FCD PF07729.12 AHV91310.1 - 5.6e-27 94.6 4.0 5.6e-27 94.6 4.0 1.8 2 0 0 2 2 2 1 FCD domain GntR PF00392.21 AHV91310.1 - 4.9e-16 58.1 0.4 3.5e-15 55.4 0.1 2.3 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_24 PF13412.6 AHV91310.1 - 0.0027 17.2 0.0 0.011 15.3 0.1 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 AHV91310.1 - 0.14 12.1 0.0 0.34 10.8 0.0 1.7 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB DDE_Tnp_ISL3 PF01610.17 AHV91311.1 - 7.9e-65 218.9 1.2 1.1e-64 218.4 0.3 1.6 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV91311.1 - 1.4e-11 43.6 0.1 3.6e-11 42.3 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV91311.1 - 5.3e-09 36.6 11.2 1.1e-08 35.6 11.2 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV91311.1 - 0.0056 16.7 0.2 0.016 15.3 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain SLT_L PF14718.6 AHV91311.1 - 0.016 15.3 1.5 0.016 15.3 1.5 1.8 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain NOB1_Zn_bind PF08772.11 AHV91311.1 - 0.017 15.2 0.2 1.2 9.3 0.0 2.5 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-IS66 PF13005.7 AHV91311.1 - 8.2 6.9 9.6 3.6 8.1 6.6 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 SmpA_OmlA PF04355.13 AHV91312.1 - 1.4e-24 85.6 0.0 2e-24 85.1 0.0 1.2 1 0 0 1 1 1 1 SmpA / OmlA family DUF3192 PF11399.8 AHV91312.1 - 0.017 15.1 0.0 0.11 12.5 0.0 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF3192) LPAM_1 PF08139.12 AHV91312.1 - 1.8 9.2 3.7 3 8.5 3.7 1.4 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site ECH_1 PF00378.20 AHV91313.1 - 8.4e-37 126.8 0.0 1e-36 126.6 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 AHV91313.1 - 1.2e-22 80.9 0.1 4.9e-22 78.9 0.1 1.7 1 1 1 2 2 2 1 Enoyl-CoA hydratase/isomerase Phage_BR0599 PF09356.10 AHV91313.1 - 0.00022 21.5 0.1 0.00057 20.2 0.1 1.6 1 0 0 1 1 1 1 Phage conserved hypothetical protein BR0599 Glycos_transf_1 PF00534.20 AHV91314.1 - 2.6e-25 88.9 0.0 4.1e-25 88.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 AHV91314.1 - 1.4e-24 87.0 0.0 3.1e-24 85.9 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 AHV91314.1 - 2.2e-14 54.2 9.7 2.2e-14 54.2 9.7 2.0 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.6 AHV91314.1 - 5.5e-13 49.3 0.7 8e-13 48.7 0.7 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 AHV91314.1 - 7.8e-07 29.4 0.0 1.6e-06 28.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_28 PF03033.20 AHV91314.1 - 0.023 14.7 0.0 0.055 13.5 0.0 1.7 1 0 0 1 1 1 0 Glycosyltransferase family 28 N-terminal domain Glyco_trans_4_2 PF13477.6 AHV91314.1 - 0.027 14.5 0.0 0.039 14.0 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase 4-like MAPEG PF01124.18 AHV91315.1 - 1.2e-18 67.3 7.8 1.3e-18 67.1 7.8 1.0 1 0 0 1 1 1 1 MAPEG family LptF_LptG PF03739.14 AHV91315.1 - 0.0072 15.2 4.6 0.0087 14.9 4.6 1.1 1 0 0 1 1 1 1 Lipopolysaccharide export system permease LptF/LptG Lig_chan PF00060.26 AHV91315.1 - 0.18 11.7 0.1 0.22 11.4 0.1 1.2 1 0 0 1 1 1 0 Ligand-gated ion channel MotA_ExbB PF01618.16 AHV91316.1 - 6.9e-41 139.0 0.1 9.6e-41 138.5 0.1 1.2 1 0 0 1 1 1 1 MotA/TolQ/ExbB proton channel family LapA_dom PF06305.11 AHV91316.1 - 0.25 11.2 0.1 0.25 11.2 0.1 2.7 3 0 0 3 3 3 0 Lipopolysaccharide assembly protein A domain SCO1-SenC PF02630.14 AHV91317.1 - 1.2e-41 141.8 0.0 1.4e-41 141.5 0.0 1.1 1 0 0 1 1 1 1 SCO1/SenC AhpC-TSA PF00578.21 AHV91317.1 - 2.4e-10 40.4 0.0 8.8e-10 38.6 0.0 1.8 1 1 0 1 1 1 1 AhpC/TSA family Thioredoxin_8 PF13905.6 AHV91317.1 - 2.7e-06 27.6 0.0 5.4e-06 26.7 0.0 1.5 1 1 0 1 1 1 1 Thioredoxin-like Redoxin PF08534.10 AHV91317.1 - 7.4e-05 22.5 0.0 0.0001 22.1 0.0 1.3 1 1 0 1 1 1 1 Redoxin DHR10 PF18595.1 AHV91317.1 - 0.24 11.5 0.1 0.57 10.3 0.0 1.6 2 0 0 2 2 2 0 Designed helical repeat protein 10 domain FecR PF04773.13 AHV91318.1 - 5.3e-18 65.4 0.2 7.8e-18 64.9 0.2 1.2 1 0 0 1 1 1 1 FecR protein DUF4880 PF16220.5 AHV91318.1 - 1.7e-12 47.0 12.8 1.7e-12 47.0 12.8 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF4880) RecX PF02631.16 AHV91319.1 - 1.5e-26 93.2 1.8 2e-26 92.8 1.8 1.1 1 0 0 1 1 1 1 RecX family DUF4743 PF15916.5 AHV91319.1 - 0.053 13.5 0.4 0.14 12.1 0.1 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4743) CPSase_L_D3 PF02787.19 AHV91319.1 - 0.11 12.8 0.0 0.2 12.0 0.0 1.6 1 1 0 1 1 1 0 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DUF3783 PF12646.7 AHV91319.1 - 0.12 12.3 0.0 2.9 7.9 0.0 2.6 3 0 0 3 3 3 0 Domain of unknown function (DUF3783) SAS4 PF15460.6 AHV91319.1 - 0.13 12.4 0.3 4.6 7.4 0.0 2.1 1 1 0 2 2 2 0 Something about silencing, SAS, complex subunit 4 CARD_2 PF16739.5 AHV91319.1 - 0.15 12.0 0.4 13 5.9 0.0 2.1 1 1 1 2 2 2 0 Caspase recruitment domain Chromate_transp PF02417.15 AHV91320.1 - 1.2e-32 113.3 16.0 1.3e-32 113.1 16.0 1.0 1 0 0 1 1 1 1 Chromate transporter Glycos_transf_4 PF00953.21 AHV91321.1 - 6.8e-35 120.4 12.4 6.8e-35 120.4 12.4 2.3 3 0 0 3 3 3 1 Glycosyl transferase family 4 MraY_sig1 PF10555.9 AHV91321.1 - 0.0013 18.1 2.0 0.0013 18.1 2.0 2.6 2 0 0 2 2 2 1 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 TatD_DNase PF01026.21 AHV91322.1 - 1.3e-70 237.7 0.0 1.6e-70 237.4 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase PTE PF02126.18 AHV91322.1 - 0.09 12.2 0.0 0.18 11.2 0.0 1.4 1 0 0 1 1 1 0 Phosphotriesterase family MFS_1 PF07690.16 AHV91323.1 - 1.4e-50 172.2 48.0 8.6e-50 169.6 40.6 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.13 AHV91323.1 - 5.2e-10 38.3 30.9 8.4e-08 31.0 10.5 2.2 1 1 0 2 2 2 2 Transmembrane secretion effector Sugar_tr PF00083.24 AHV91323.1 - 5.1e-05 22.3 7.4 5.1e-05 22.3 7.4 3.0 2 2 0 2 2 2 1 Sugar (and other) transporter DUF3754 PF12576.8 AHV91323.1 - 3 7.8 5.9 2.5 8.0 1.1 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF3754) Sulf_transp PF04143.14 AHV91325.1 - 1.5e-71 241.6 38.2 1.5e-71 241.6 38.2 1.4 2 0 0 2 2 2 1 Sulphur transport HATPase_c PF02518.26 AHV91326.1 - 5.3e-17 62.3 0.0 8.9e-17 61.6 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 AHV91326.1 - 6.3e-10 38.9 0.7 6.3e-10 38.9 0.7 2.0 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.6 AHV91326.1 - 0.0013 18.7 0.0 0.002 18.1 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 AHV91326.1 - 0.0025 17.6 0.0 0.0048 16.7 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TonB_dep_Rec PF00593.24 AHV91327.1 - 5e-57 194.8 28.5 5e-57 194.8 28.5 2.1 1 1 1 2 2 2 1 TonB dependent receptor Plug PF07715.15 AHV91327.1 - 2.1e-13 50.8 1.3 5.3e-13 49.5 1.3 1.8 1 0 0 1 1 1 1 TonB-dependent Receptor Plug Domain STN PF07660.14 AHV91327.1 - 1.3e-07 31.2 0.6 1.2e-06 28.2 0.0 2.8 2 0 0 2 2 2 1 Secretin and TonB N terminus short domain OMP_b-brl_3 PF14905.6 AHV91327.1 - 7e-07 28.6 4.4 1.4e-05 24.2 0.1 3.3 3 1 0 3 3 3 1 Outer membrane protein beta-barrel family OmpA PF00691.20 AHV91328.1 - 1.9e-21 76.2 0.1 2.8e-21 75.7 0.1 1.2 1 0 0 1 1 1 1 OmpA family Gly-zipper_YMGG PF13441.6 AHV91328.1 - 5.5e-09 35.6 32.2 5.5e-09 35.6 32.2 1.8 2 0 0 2 2 2 1 YMGG-like Gly-zipper Gly-zipper_Omp PF13488.6 AHV91328.1 - 1.1e-08 34.9 27.6 1.1e-08 34.9 27.6 1.8 2 0 0 2 2 2 1 Glycine zipper Rick_17kDa_Anti PF05433.15 AHV91328.1 - 1.4e-05 24.8 29.8 1.4e-05 24.8 29.8 1.9 2 0 0 2 2 2 1 Glycine zipper 2TM domain Gly-zipper_OmpA PF13436.6 AHV91328.1 - 0.00051 19.8 30.8 0.00051 19.8 30.8 1.8 2 0 0 2 2 2 1 Glycine-zipper domain Keratin_2_head PF16208.5 AHV91328.1 - 0.054 13.6 6.8 0.088 12.9 6.8 1.4 1 0 0 1 1 1 0 Keratin type II head Pilus_CpaD PF09476.10 AHV91328.1 - 0.069 12.9 2.4 0.48 10.1 0.2 2.2 2 0 0 2 2 2 0 Pilus biogenesis CpaD protein (pilus_cpaD) TraT PF05818.12 AHV91328.1 - 0.16 11.6 9.5 0.23 11.1 9.5 1.5 1 1 0 1 1 1 0 Enterobacterial TraT complement resistance protein Nitroreductase PF00881.24 AHV91329.1 - 2.3e-14 53.8 0.1 2.8e-14 53.6 0.1 1.1 1 0 0 1 1 1 1 Nitroreductase family PSD2 PF07624.11 AHV91329.1 - 0.026 14.3 0.1 0.33 10.8 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1585) DUF4392 PF14336.6 AHV91330.1 - 3e-70 237.0 0.0 3.6e-70 236.7 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4392) Glyco_transf_9 PF01075.17 AHV91331.1 - 4.7e-72 242.3 0.0 8.1e-72 241.5 0.0 1.3 1 1 0 1 1 1 1 Glycosyltransferase family 9 (heptosyltransferase) SIS PF01380.22 AHV91332.1 - 0.011 15.5 0.0 0.016 15.0 0.0 1.3 1 0 0 1 1 1 0 SIS domain NADH_4Fe-4S PF10589.9 AHV91333.1 - 1.8e-32 111.2 0.2 2.3e-32 110.9 0.2 1.1 1 0 0 1 1 1 1 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region HisG PF01634.18 AHV91334.1 - 3e-50 170.3 0.0 3.5e-50 170.1 0.0 1.1 1 0 0 1 1 1 1 ATP phosphoribosyltransferase NMT1 PF09084.11 AHV91334.1 - 0.01 15.8 0.1 6.1 6.7 0.0 3.0 2 1 1 3 3 3 0 NMT1/THI5 like ComZ PF10815.8 AHV91334.1 - 0.099 12.7 0.0 2.6 8.1 0.0 2.6 3 0 0 3 3 3 0 ComZ DUF4148 PF13663.6 AHV91335.1 - 8.5e-23 80.3 12.7 8.5e-09 35.5 1.8 3.1 3 0 0 3 3 3 3 Domain of unknown function (DUF4148) MarR_2 PF12802.7 AHV91335.1 - 0.005 16.7 0.4 0.13 12.1 0.1 2.2 2 0 0 2 2 2 1 MarR family ANAPC2 PF08672.11 AHV91335.1 - 0.055 14.0 0.0 31 5.2 0.0 2.9 3 0 0 3 3 3 0 Anaphase promoting complex (APC) subunit 2 Sensor_TM1 PF13755.6 AHV91335.1 - 0.1 12.3 0.3 8.2 6.3 0.1 2.4 1 1 1 2 2 2 0 Sensor N-terminal transmembrane domain DUF4398 PF14346.6 AHV91335.1 - 2.3 8.9 12.1 54 4.5 9.0 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4398) DUF4083 PF13314.6 AHV91336.1 - 0.091 12.7 0.4 0.091 12.7 0.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4083) Acetate_kinase PF00871.17 AHV91337.1 - 4e-100 335.3 0.0 4.5e-100 335.1 0.0 1.0 1 0 0 1 1 1 1 Acetokinase family TctC PF03401.14 AHV91338.1 - 3.2e-76 256.0 0.1 3.8e-76 255.7 0.1 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor ABC_tran PF00005.27 AHV91339.1 - 2.9e-24 86.1 0.0 3.7e-24 85.8 0.0 1.1 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.8 AHV91339.1 - 4.6e-11 42.4 0.3 9e-11 41.4 0.3 1.5 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_21 PF13304.6 AHV91339.1 - 2.6e-05 24.2 1.4 0.033 14.0 0.2 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_30 PF13604.6 AHV91339.1 - 0.024 14.4 0.4 0.28 10.9 0.4 2.1 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 AHV91339.1 - 0.032 14.0 0.0 0.073 12.8 0.0 1.6 1 1 0 1 1 1 0 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 AHV91339.1 - 0.16 11.9 0.0 0.27 11.1 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase CDO_I PF05995.12 AHV91340.1 - 2.7e-05 23.5 0.0 3.6e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 Cysteine dioxygenase type I PhdYeFM_antitox PF02604.19 AHV91340.1 - 0.029 14.2 0.0 0.045 13.6 0.0 1.2 1 0 0 1 1 1 0 Antitoxin Phd_YefM, type II toxin-antitoxin system Auxin_BP PF02041.16 AHV91340.1 - 0.11 12.1 0.0 0.17 11.6 0.0 1.2 1 0 0 1 1 1 0 Auxin binding protein Ribosomal_L20 PF00453.18 AHV91341.1 - 1.5e-47 160.1 6.9 1.7e-47 159.9 6.9 1.0 1 0 0 1 1 1 1 Ribosomal protein L20 DNA_pol_B_exo2 PF10108.9 AHV91342.1 - 6.3e-92 307.1 0.0 7.2e-92 306.9 0.0 1.0 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB RNase_H_2 PF13482.6 AHV91342.1 - 3.6e-14 53.1 0.0 6.7e-14 52.2 0.0 1.4 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_B_exo1 PF03104.19 AHV91342.1 - 0.00019 20.7 0.0 0.00028 20.2 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain Glyco_transf_7C PF02709.14 AHV91342.1 - 0.036 13.7 0.0 0.21 11.3 0.0 2.0 2 0 0 2 2 2 0 N-terminal domain of galactosyltransferase IMP2_C PF18591.1 AHV91342.1 - 0.13 12.2 0.0 0.24 11.3 0.0 1.4 1 0 0 1 1 1 0 Immune Mapped Protein 2 (IMP2) C-terminal domain MFS_1 PF07690.16 AHV91343.1 - 2.7e-28 98.9 47.5 2.7e-28 98.9 47.5 1.3 2 0 0 2 2 2 1 Major Facilitator Superfamily FecR PF04773.13 AHV91344.1 - 4.5e-18 65.7 0.1 7.4e-18 65.0 0.1 1.3 1 0 0 1 1 1 1 FecR protein DUF4880 PF16220.5 AHV91344.1 - 3.8e-11 42.7 8.9 3.8e-11 42.7 8.9 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF4880) FAD_syn PF06574.12 AHV91345.1 - 8.6e-49 165.5 0.0 1.2e-48 165.0 0.0 1.2 1 0 0 1 1 1 1 FAD synthetase Flavokinase PF01687.17 AHV91345.1 - 1.5e-34 118.7 0.0 2.1e-34 118.2 0.0 1.2 1 0 0 1 1 1 1 Riboflavin kinase CTP_transf_like PF01467.26 AHV91345.1 - 0.0014 18.9 0.1 0.0036 17.5 0.1 1.8 1 1 0 1 1 1 1 Cytidylyltransferase-like Gcw_chp PF09694.10 AHV91346.1 - 1e-50 172.9 11.5 1.2e-50 172.6 11.5 1.0 1 0 0 1 1 1 1 Bacterial protein of unknown function (Gcw_chp) adh_short_C2 PF13561.6 AHV91347.1 - 4.2e-51 173.7 1.0 5.2e-51 173.4 1.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 AHV91347.1 - 9.6e-40 136.1 0.3 1.5e-39 135.5 0.3 1.2 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 AHV91347.1 - 4.4e-09 36.5 1.8 1.9e-07 31.1 1.8 2.1 1 1 0 1 1 1 1 KR domain Epimerase PF01370.21 AHV91347.1 - 2.1e-07 30.7 0.1 4.2e-07 29.7 0.1 1.5 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 AHV91347.1 - 1.2e-06 28.5 1.3 1.4e-06 28.3 1.3 1.2 1 0 0 1 1 1 1 NAD(P)H-binding RmlD_sub_bind PF04321.17 AHV91347.1 - 0.063 12.4 0.1 0.094 11.8 0.1 1.2 1 0 0 1 1 1 0 RmlD substrate binding domain GDP_Man_Dehyd PF16363.5 AHV91347.1 - 0.17 11.2 0.0 0.28 10.6 0.0 1.3 1 0 0 1 1 1 0 GDP-mannose 4,6 dehydratase 4HBT PF03061.22 AHV91348.1 - 4.3e-11 43.0 0.1 8.6e-11 42.1 0.1 1.5 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.6 AHV91348.1 - 2.1e-06 27.9 0.1 3e-06 27.4 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) PS-DH PF14765.6 AHV91348.1 - 0.14 11.3 0.4 0.21 10.8 0.0 1.4 2 0 0 2 2 2 0 Polyketide synthase dehydratase Trans_reg_C PF00486.28 AHV91349.1 - 1.5e-08 34.6 0.0 2.6e-08 33.8 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal CoA_transf_3 PF02515.17 AHV91350.1 - 1.2e-46 159.5 0.0 1.5e-46 159.2 0.0 1.0 1 0 0 1 1 1 1 CoA-transferase family III Asp_Glu_race PF01177.22 AHV91351.1 - 7.7e-54 182.9 0.1 8.6e-54 182.7 0.1 1.0 1 0 0 1 1 1 1 Asp/Glu/Hydantoin racemase Amdase PF17645.1 AHV91351.1 - 0.0011 18.6 0.5 0.66 9.6 0.0 2.3 1 1 1 2 2 2 2 Arylmalonate decarboxylase DUF3784 PF12650.7 AHV91352.1 - 0.0042 17.2 0.6 0.0052 17.0 0.6 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF3784) CTP_transf_like PF01467.26 AHV91353.1 - 2.1e-14 53.9 0.0 2.4e-14 53.8 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 AHV91353.1 - 0.0036 17.2 0.0 0.0096 15.8 0.0 1.8 1 1 0 1 1 1 1 FAD synthetase Methyltrans_RNA PF04452.14 AHV91353.1 - 0.03 13.7 0.0 0.05 12.9 0.0 1.3 1 0 0 1 1 1 0 RNA methyltransferase AhpC-TSA PF00578.21 AHV91354.1 - 2e-32 111.7 0.0 2.4e-32 111.5 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 AHV91354.1 - 1.5e-14 53.9 0.0 1.8e-14 53.7 0.0 1.0 1 0 0 1 1 1 1 Redoxin DUF899 PF05988.12 AHV91354.1 - 0.029 13.9 0.0 0.035 13.6 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF899) Acyl-CoA_dh_1 PF00441.24 AHV91355.1 - 3.8e-39 134.3 0.5 5.9e-39 133.7 0.5 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 AHV91355.1 - 3.6e-38 130.7 0.0 6.6e-38 129.9 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 AHV91355.1 - 1.5e-27 95.6 0.0 2.8e-27 94.8 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 AHV91355.1 - 1.5e-13 51.1 0.0 2.3e-13 50.6 0.0 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Amidohydro_1 PF01979.20 AHV91356.1 - 0.074 12.4 0.0 0.074 12.4 0.0 1.0 1 0 0 1 1 1 0 Amidohydrolase family Sdh_cyt PF01127.22 AHV91357.1 - 3.3e-29 101.4 2.0 3.9e-29 101.1 2.0 1.0 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Fumarate_red_D PF02313.17 AHV91357.1 - 0.00026 21.1 4.5 0.00034 20.7 4.5 1.2 1 0 0 1 1 1 1 Fumarate reductase subunit D RseC_MucC PF04246.12 AHV91357.1 - 1.4 8.9 4.4 13 5.7 0.0 2.3 2 0 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC LysE PF01810.18 AHV91358.1 - 1.4e-12 47.5 4.4 1.4e-12 47.5 4.4 1.1 1 0 0 1 1 1 1 LysE type translocator TerC PF03741.16 AHV91358.1 - 0.012 15.3 0.5 0.013 15.2 0.5 1.1 1 0 0 1 1 1 0 Integral membrane protein TerC family Ribosomal_L2_C PF03947.18 AHV91359.1 - 1.2e-55 187.1 4.0 1.2e-55 187.1 4.0 1.5 2 0 0 2 2 2 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.23 AHV91359.1 - 8.2e-33 112.2 1.1 1.5e-32 111.4 1.1 1.5 1 0 0 1 1 1 1 Ribosomal Proteins L2, RNA binding domain FAD-oxidase_C PF02913.19 AHV91360.1 - 3.9e-39 134.8 0.1 5.1e-39 134.4 0.1 1.2 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain Biotin_lipoyl_2 PF13533.6 AHV91361.1 - 1.5e-12 47.1 3.4 3.1e-12 46.1 0.2 2.7 3 0 0 3 3 3 1 Biotin-lipoyl like HlyD_3 PF13437.6 AHV91361.1 - 1.6e-06 28.8 0.2 0.027 15.1 0.1 2.5 2 0 0 2 2 2 2 HlyD family secretion protein HlyD_D23 PF16576.5 AHV91361.1 - 1.4e-05 24.4 0.6 1.9e-05 24.0 0.6 1.2 1 0 0 1 1 1 1 Barrel-sandwich domain of CusB or HlyD membrane-fusion PTS_EIIA_1 PF00358.20 AHV91361.1 - 0.004 16.9 0.0 0.12 12.1 0.0 2.2 2 0 0 2 2 2 1 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 Biotin_lipoyl PF00364.22 AHV91361.1 - 0.0058 16.4 0.0 0.069 13.0 0.0 2.2 2 0 0 2 2 2 1 Biotin-requiring enzyme Peptidase_M23 PF01551.22 AHV91361.1 - 0.037 14.2 0.1 4.3 7.6 0.0 2.4 2 0 0 2 2 2 0 Peptidase family M23 Tropomyosin PF00261.20 AHV91361.1 - 0.17 11.2 0.7 0.24 10.8 0.7 1.1 1 0 0 1 1 1 0 Tropomyosin SNARE PF05739.19 AHV91361.1 - 3.8 7.6 7.0 11 6.1 0.2 3.3 3 0 0 3 3 3 0 SNARE domain Porin_4 PF13609.6 AHV91363.1 - 7.7e-57 193.4 35.8 1.1e-56 192.9 35.8 1.1 1 0 0 1 1 1 1 Gram-negative porin Porin_1 PF00267.21 AHV91363.1 - 8.7e-20 71.4 19.0 5e-19 68.9 19.0 1.9 1 1 0 1 1 1 1 Gram-negative porin TPR_11 PF13414.6 AHV91365.1 - 3.5e-18 65.0 12.0 2.7e-05 23.7 0.1 5.6 4 1 1 5 5 5 5 TPR repeat TPR_2 PF07719.17 AHV91365.1 - 4.1e-14 51.5 24.4 4.6e-05 23.2 0.0 6.6 7 0 0 7 7 7 3 Tetratricopeptide repeat TPR_16 PF13432.6 AHV91365.1 - 5.2e-14 52.6 53.0 9.5e-06 26.2 15.6 4.8 3 1 1 4 4 4 4 Tetratricopeptide repeat TPR_19 PF14559.6 AHV91365.1 - 1.8e-13 50.8 29.8 6.6e-05 23.3 9.2 3.9 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_17 PF13431.6 AHV91365.1 - 1.7e-10 40.5 7.1 0.00096 19.4 0.2 5.0 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_1 PF00515.28 AHV91365.1 - 3.1e-10 39.4 13.0 3e-06 26.8 0.0 5.9 6 1 0 6 6 6 2 Tetratricopeptide repeat TPR_14 PF13428.6 AHV91365.1 - 1.3e-09 38.1 41.1 0.0027 18.4 1.7 6.9 1 1 5 6 6 6 4 Tetratricopeptide repeat TPR_12 PF13424.6 AHV91365.1 - 3e-08 33.8 33.9 0.014 15.7 6.4 4.9 2 2 2 4 4 4 4 Tetratricopeptide repeat TPR_9 PF13371.6 AHV91365.1 - 4.6e-07 29.9 37.4 0.002 18.3 3.0 5.0 3 1 1 4 4 4 3 Tetratricopeptide repeat TPR_8 PF13181.6 AHV91365.1 - 6e-07 29.2 1.4 5.5 7.5 0.0 4.8 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_7 PF13176.6 AHV91365.1 - 0.0032 17.4 13.2 0.19 11.8 0.1 4.6 5 0 0 5 5 4 2 Tetratricopeptide repeat TPR_21 PF09976.9 AHV91365.1 - 0.0083 15.8 12.3 0.091 12.5 2.0 2.5 1 1 0 2 2 2 2 Tetratricopeptide repeat-like domain Glyco_transf_9 PF01075.17 AHV91365.1 - 0.011 15.1 0.1 0.024 14.0 0.1 1.5 1 0 0 1 1 1 0 Glycosyltransferase family 9 (heptosyltransferase) ANAPC3 PF12895.7 AHV91365.1 - 0.012 15.8 1.9 0.097 12.9 0.5 2.7 2 1 0 2 2 2 0 Anaphase-promoting complex, cyclosome, subunit 3 TPR_3 PF07720.12 AHV91365.1 - 0.023 14.7 2.7 1.8 8.7 0.2 4.0 4 0 0 4 4 4 0 Tetratricopeptide repeat Alkyl_sulf_dimr PF14863.6 AHV91365.1 - 0.54 10.7 3.8 0.77 10.2 0.2 2.5 3 0 0 3 3 3 0 Alkyl sulfatase dimerisation BTAD PF03704.17 AHV91365.1 - 3.5 8.1 25.4 3.9 7.9 2.0 4.4 2 1 3 5 5 5 0 Bacterial transcriptional activator domain DctQ PF04290.12 AHV91366.1 - 0.0014 18.5 0.7 0.0017 18.3 0.7 1.1 1 0 0 1 1 1 1 Tripartite ATP-independent periplasmic transporters, DctQ component Trp_oprn_chp PF09534.10 AHV91366.1 - 0.0055 16.5 3.5 0.0067 16.2 3.5 1.0 1 0 0 1 1 1 1 Tryptophan-associated transmembrane protein (Trp_oprn_chp) DUF202 PF02656.15 AHV91366.1 - 0.006 17.0 5.2 0.89 10.0 0.3 2.0 1 1 1 2 2 2 2 Domain of unknown function (DUF202) RuBisCo_chap_C PF18087.1 AHV91366.1 - 0.027 14.1 0.8 0.034 13.8 0.8 1.3 1 1 1 2 2 2 0 Rubisco Assembly chaperone C-terminal domain YtpI PF14007.6 AHV91366.1 - 0.069 13.3 0.6 0.94 9.7 0.1 2.1 2 0 0 2 2 2 0 YtpI-like protein DUF900 PF05990.12 AHV91366.1 - 0.15 11.5 0.0 0.18 11.3 0.0 1.0 1 0 0 1 1 1 0 Alpha/beta hydrolase of unknown function (DUF900) DUF3188 PF11384.8 AHV91366.1 - 0.68 9.7 5.5 3.6 7.4 0.8 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3188) Gram_pos_anchor PF00746.21 AHV91366.1 - 5.3 7.1 6.3 3.1 7.8 1.0 2.2 2 0 0 2 2 2 0 LPXTG cell wall anchor motif DAO PF01266.24 AHV91367.1 - 8.3e-07 28.9 0.8 9.3e-07 28.7 0.8 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase polyprenyl_synt PF00348.17 AHV91368.1 - 7.5e-77 257.8 0.3 9.1e-77 257.6 0.3 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase SQS_PSY PF00494.19 AHV91368.1 - 0.074 12.5 4.6 0.11 12.0 4.4 1.6 1 1 0 1 1 1 0 Squalene/phytoene synthase HTH_12 PF08461.10 AHV91368.1 - 0.14 12.1 0.0 0.27 11.2 0.0 1.5 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain ShlB PF03865.13 AHV91369.1 - 5e-72 243.0 17.6 6.4e-72 242.6 17.6 1.1 1 0 0 1 1 1 1 Haemolysin secretion/activation protein ShlB/FhaC/HecB POTRA_2 PF08479.11 AHV91369.1 - 1.1e-12 47.6 0.0 2.9e-12 46.2 0.0 1.8 1 0 0 1 1 1 1 POTRA domain, ShlB-type POTRA_3 PF17287.2 AHV91369.1 - 3.6e-10 39.1 0.1 1.2e-09 37.5 0.1 2.0 1 0 0 1 1 1 1 POTRA domain Lyase_N PF09092.11 AHV91369.1 - 0.16 11.8 0.2 0.39 10.5 0.2 1.6 1 0 0 1 1 1 0 Lyase, N terminal FliM PF02154.15 AHV91370.1 - 6.8e-71 238.1 0.0 1.2e-70 237.3 0.0 1.4 2 0 0 2 2 2 1 Flagellar motor switch protein FliM FliMN_C PF01052.20 AHV91370.1 - 2.4e-15 56.3 0.0 4.1e-15 55.5 0.0 1.4 1 0 0 1 1 1 1 Type III flagellar switch regulator (C-ring) FliN C-term Cyclase PF04199.13 AHV91371.1 - 2.4e-18 66.7 0.1 3.2e-18 66.3 0.1 1.2 1 0 0 1 1 1 1 Putative cyclase polyprenyl_synt PF00348.17 AHV91372.1 - 2.1e-55 187.6 0.3 2.6e-55 187.3 0.3 1.0 1 0 0 1 1 1 1 Polyprenyl synthetase ParBc PF02195.18 AHV91372.1 - 0.1 12.9 0.1 0.25 11.7 0.1 1.7 1 0 0 1 1 1 0 ParB-like nuclease domain HlyD_3 PF13437.6 AHV91373.1 - 3.3e-17 63.1 9.0 4.6e-13 49.8 0.1 3.0 3 0 0 3 3 3 2 HlyD family secretion protein HlyD_D23 PF16576.5 AHV91373.1 - 2.7e-15 56.2 11.5 6.9e-10 38.5 0.2 2.3 1 1 1 2 2 2 2 Barrel-sandwich domain of CusB or HlyD membrane-fusion OEP PF02321.18 AHV91373.1 - 2.1e-06 27.7 12.9 2.1e-06 27.7 12.9 2.0 1 1 1 2 2 2 1 Outer membrane efflux protein Biotin_lipoyl PF00364.22 AHV91373.1 - 2.6e-06 27.1 0.1 0.018 14.8 0.0 2.3 2 0 0 2 2 2 2 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 AHV91373.1 - 5.9e-06 26.0 2.0 5.9e-06 26.0 2.0 2.9 4 0 0 4 4 4 1 Biotin-lipoyl like Lipase_chap PF03280.14 AHV91373.1 - 0.013 15.5 24.7 0.013 15.5 24.7 2.0 2 0 0 2 2 2 0 Proteobacterial lipase chaperone protein Peptidase_M23 PF01551.22 AHV91373.1 - 0.036 14.3 0.6 0.26 11.5 0.0 2.6 2 2 1 3 3 3 0 Peptidase family M23 PTS_EIIA_1 PF00358.20 AHV91373.1 - 0.074 12.8 0.2 0.41 10.4 0.0 2.0 2 0 0 2 2 2 0 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 Pilin PF00114.19 AHV91373.1 - 2.2 9.3 9.7 2.3 9.2 0.6 2.4 2 0 0 2 2 2 0 Pilin (bacterial filament) Glyco_hydro_3_C PF01915.22 AHV91373.1 - 9.4 6.1 6.9 35 4.2 6.9 1.8 1 1 0 1 1 1 0 Glycosyl hydrolase family 3 C-terminal domain DHDPS PF00701.22 AHV91374.1 - 2.5e-33 115.1 0.0 2.9e-33 114.8 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family GAD PF02938.14 AHV91374.1 - 0.023 14.9 0.0 2.9 8.2 0.0 3.1 2 1 1 3 3 3 0 GAD domain HMGL-like PF00682.19 AHV91374.1 - 0.024 14.2 0.5 0.051 13.1 0.1 1.6 2 0 0 2 2 2 0 HMGL-like PEP-utilizers PF00391.23 AHV91374.1 - 0.11 12.3 0.1 5.1 6.9 0.1 2.6 1 1 1 2 2 2 0 PEP-utilising enzyme, mobile domain GATase_2 PF00310.21 AHV91375.1 - 9.5e-186 617.5 0.0 1.2e-185 617.2 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Glu_synthase PF01645.17 AHV91375.1 - 1.2e-153 511.6 2.3 5.2e-152 506.3 0.2 2.7 2 1 1 3 3 3 2 Conserved region in glutamate synthase Glu_syn_central PF04898.14 AHV91375.1 - 2.3e-110 368.5 0.0 4.3e-110 367.6 0.0 1.5 1 0 0 1 1 1 1 Glutamate synthase central domain GXGXG PF01493.19 AHV91375.1 - 4.7e-79 264.4 5.4 9.4e-79 263.4 5.4 1.5 1 0 0 1 1 1 1 GXGXG motif YGGT PF02325.17 AHV91375.1 - 0.093 13.2 0.2 0.2 12.1 0.2 1.5 1 0 0 1 1 1 0 YGGT family FMN_dh PF01070.18 AHV91375.1 - 0.33 9.9 2.5 1.1 8.2 2.0 2.1 3 0 0 3 3 3 0 FMN-dependent dehydrogenase ketoacyl-synt PF00109.26 AHV91376.1 - 3.7e-65 220.0 0.5 7.7e-65 219.0 0.1 1.7 2 0 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain Ketoacyl-synt_C PF02801.22 AHV91376.1 - 4.7e-33 113.7 0.1 7.6e-33 113.0 0.1 1.4 1 0 0 1 1 1 1 Beta-ketoacyl synthase, C-terminal domain Thiolase_N PF00108.23 AHV91376.1 - 5.5e-05 22.7 0.1 9.6e-05 21.9 0.1 1.3 1 0 0 1 1 1 1 Thiolase, N-terminal domain Ribosomal_L30 PF00327.20 AHV91377.1 - 1.6e-18 66.3 0.4 1.8e-18 66.1 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e rve_3 PF13683.6 AHV91378.1 - 3.8e-12 45.8 0.1 4.7e-12 45.5 0.1 1.1 1 0 0 1 1 1 1 Integrase core domain rve_2 PF13333.6 AHV91378.1 - 0.0067 16.6 0.0 0.0078 16.4 0.0 1.1 1 0 0 1 1 1 1 Integrase core domain T2SSF PF00482.23 AHV91379.1 - 0.00079 19.4 4.2 0.39 10.7 0.2 2.4 2 0 0 2 2 2 2 Type II secretion system (T2SS), protein F NUDIX PF00293.28 AHV91380.1 - 1.9e-14 53.8 0.0 2.8e-14 53.3 0.0 1.3 1 0 0 1 1 1 1 NUDIX domain ACR_tran PF00873.19 AHV91381.1 - 1.5e-67 228.2 9.7 1.7e-67 228.0 9.7 1.0 1 0 0 1 1 1 1 AcrB/AcrD/AcrF family MMPL PF03176.15 AHV91381.1 - 0.0001 21.4 9.9 0.00012 21.1 9.9 1.0 1 0 0 1 1 1 1 MMPL family DUF588 PF04535.12 AHV91381.1 - 0.086 12.6 0.1 0.086 12.6 0.1 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF588) Ribosomal_L36 PF00444.18 AHV91382.1 - 8.2e-18 64.3 11.3 8.8e-18 64.2 11.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L36 LysR_substrate PF03466.20 AHV91383.1 - 3.1e-32 111.6 5.4 5.3e-32 110.9 5.4 1.4 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 AHV91383.1 - 1.7e-19 69.5 3.2 3.2e-19 68.6 3.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_30 PF13556.6 AHV91383.1 - 0.00021 21.0 2.8 0.00052 19.8 2.8 1.7 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain MarR_2 PF12802.7 AHV91383.1 - 0.004 17.0 0.6 0.011 15.6 0.6 1.8 1 0 0 1 1 1 1 MarR family HTH_28 PF13518.6 AHV91383.1 - 0.0049 17.0 0.1 0.014 15.5 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 AHV91383.1 - 0.0076 16.1 0.5 0.019 14.8 0.5 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 AHV91383.1 - 0.011 15.8 0.8 0.011 15.8 0.8 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.6 AHV91383.1 - 0.026 14.3 0.1 0.071 12.9 0.1 1.7 1 0 0 1 1 1 0 Homeodomain-like domain CoA_transf_3 PF02515.17 AHV91384.1 - 2e-98 329.9 0.0 2.3e-98 329.7 0.0 1.0 1 0 0 1 1 1 1 CoA-transferase family III Bac_globin PF01152.21 AHV91385.1 - 0.00056 20.0 0.0 0.00071 19.7 0.0 1.1 1 0 0 1 1 1 1 Bacterial-like globin 3HCDH_N PF02737.18 AHV91386.1 - 8e-62 208.3 0.7 2e-61 207.0 0.2 1.9 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.22 AHV91386.1 - 3.5e-47 158.9 0.1 4.4e-23 81.7 0.0 3.4 3 0 0 3 3 3 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_binding_2 PF03446.15 AHV91386.1 - 0.00013 22.1 0.1 0.00032 20.9 0.1 1.7 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 AHV91386.1 - 0.00016 21.1 0.2 0.00037 19.9 0.2 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_RFF PF18321.1 AHV91386.1 - 0.00065 20.1 0.8 0.00065 20.1 0.8 4.4 6 0 0 6 6 6 1 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain XdhC_C PF13478.6 AHV91386.1 - 0.012 16.2 0.2 0.038 14.5 0.2 2.0 1 0 0 1 1 1 0 XdhC Rossmann domain F420_oxidored PF03807.17 AHV91386.1 - 0.07 13.7 1.1 0.16 12.6 0.4 2.0 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent AlaDh_PNT_C PF01262.21 AHV91386.1 - 1.4 8.1 5.1 1.7 7.9 2.6 2.0 1 1 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain LysR_substrate PF03466.20 AHV91387.1 - 1.1e-30 106.6 0.9 1.8e-30 105.9 0.9 1.3 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 AHV91387.1 - 3.1e-19 68.7 3.6 8.3e-19 67.3 3.6 1.8 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_IclR PF09339.10 AHV91387.1 - 0.17 11.7 1.1 0.42 10.4 1.1 1.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF4880 PF16220.5 AHV91387.1 - 4.1 7.4 8.0 0.65 9.9 1.0 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF4880) ABC_sub_bind PF04392.12 AHV91388.1 - 7.4e-110 366.8 14.6 8.6e-110 366.6 14.6 1.0 1 0 0 1 1 1 1 ABC transporter substrate binding protein DUF883 PF05957.13 AHV91388.1 - 0.12 12.9 3.2 0.16 12.6 1.8 2.0 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF883) DUF3235 PF11574.8 AHV91388.1 - 2.2 9.2 11.1 0.42 11.5 1.2 3.5 2 1 1 3 3 3 0 Protein of unknown function (DUF3235) GntR PF00392.21 AHV91389.1 - 2.5e-18 65.5 1.0 7.1e-18 64.0 0.2 2.1 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family UTRA PF07702.13 AHV91389.1 - 4.7e-16 58.9 0.7 6.9e-16 58.4 0.7 1.3 1 0 0 1 1 1 1 UTRA domain MarR_2 PF12802.7 AHV91389.1 - 4.2e-05 23.4 0.1 0.00011 22.0 0.1 1.7 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 AHV91389.1 - 0.00025 20.8 0.0 0.00054 19.7 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_36 PF13730.6 AHV91389.1 - 0.00088 19.2 0.0 0.0017 18.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 AHV91389.1 - 0.0014 18.2 0.0 0.0027 17.2 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 AHV91389.1 - 0.0019 18.1 0.0 0.0037 17.1 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB RP-C PF03428.13 AHV91389.1 - 0.0044 16.7 0.0 0.01 15.5 0.0 1.6 1 0 0 1 1 1 1 Replication protein C N-terminal domain PaaX PF07848.12 AHV91389.1 - 0.0049 17.0 0.0 0.011 15.9 0.0 1.6 1 0 0 1 1 1 1 PaaX-like protein Fe_dep_repress PF01325.19 AHV91389.1 - 0.0055 16.9 0.0 0.012 15.8 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_11 PF08279.12 AHV91389.1 - 0.0068 16.3 0.0 0.016 15.1 0.0 1.6 1 0 0 1 1 1 1 HTH domain HTH_23 PF13384.6 AHV91389.1 - 0.01 15.6 0.1 0.24 11.2 0.0 2.8 2 0 0 2 2 2 1 Homeodomain-like domain HTH_DeoR PF08220.12 AHV91389.1 - 0.019 14.7 0.1 0.085 12.6 0.0 2.0 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain HTH_27 PF13463.6 AHV91389.1 - 0.02 15.4 0.0 0.065 13.7 0.0 1.9 2 0 0 2 2 1 0 Winged helix DNA-binding domain MarR PF01047.22 AHV91389.1 - 0.021 14.7 0.0 0.043 13.7 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_29 PF13551.6 AHV91389.1 - 0.024 14.7 0.0 0.08 13.0 0.0 1.8 1 0 0 1 1 1 0 Winged helix-turn helix HTH_Tnp_4 PF13613.6 AHV91389.1 - 0.025 14.3 0.0 0.046 13.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease HTH_41 PF14502.6 AHV91389.1 - 0.17 11.6 0.0 0.3 10.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain TPR_2 PF07719.17 AHV91390.1 - 0.024 14.7 0.1 0.055 13.6 0.0 1.6 2 0 0 2 2 2 0 Tetratricopeptide repeat HATPase_c PF02518.26 AHV91391.1 - 6.2e-21 75.0 0.0 1.2e-20 74.1 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HAMP PF00672.25 AHV91391.1 - 4.5e-12 46.2 1.4 1.9e-11 44.1 0.1 2.8 2 0 0 2 2 2 1 HAMP domain HisKA PF00512.25 AHV91391.1 - 7.4e-12 45.1 1.9 5e-09 36.1 0.0 4.0 4 0 0 4 4 4 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.10 AHV91391.1 - 1.4e-06 28.5 0.1 4.1e-06 27.0 0.1 1.9 1 0 0 1 1 1 1 PAS fold HATPase_c_2 PF13581.6 AHV91391.1 - 2.7e-05 24.1 0.5 6.1e-05 23.0 0.1 1.8 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain PAS_7 PF12860.7 AHV91391.1 - 0.00028 21.0 0.0 0.00075 19.6 0.0 1.8 1 0 0 1 1 1 1 PAS fold PAS PF00989.25 AHV91391.1 - 0.00063 19.7 0.0 0.0014 18.6 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 AHV91391.1 - 0.00067 19.6 0.3 0.0033 17.4 0.0 2.3 2 0 0 2 2 2 1 PAS domain PAS_9 PF13426.7 AHV91391.1 - 0.0011 19.1 0.0 0.0026 18.0 0.0 1.7 1 0 0 1 1 1 1 PAS domain HATPase_c_5 PF14501.6 AHV91391.1 - 0.0073 16.2 0.0 0.024 14.6 0.0 1.8 1 1 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.6 AHV91391.1 - 0.067 13.0 0.0 0.19 11.6 0.0 1.7 2 0 0 2 2 2 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MIG-14_Wnt-bd PF06664.12 AHV91391.1 - 0.084 12.1 2.5 0.15 11.2 2.5 1.3 1 0 0 1 1 1 0 Wnt-binding factor required for Wnt secretion DUF4199 PF13858.6 AHV91391.1 - 0.11 12.8 5.0 0.052 13.9 1.4 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF4199) DUF1275 PF06912.11 AHV91391.1 - 3.1 7.7 10.6 2.4 8.0 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1275) MlaA PF04333.13 AHV91392.1 - 0.25 11.0 0.1 0.25 11.0 0.1 1.4 2 0 0 2 2 2 0 MlaA lipoprotein ABC_tran PF00005.27 AHV91393.1 - 5.5e-30 104.7 0.0 7.8e-30 104.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_16 PF13191.6 AHV91393.1 - 2.3e-06 28.1 0.2 4.4e-06 27.2 0.2 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_21 PF13304.6 AHV91393.1 - 4e-05 23.6 0.0 0.036 13.9 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 AHV91393.1 - 0.0011 18.6 0.0 0.0023 17.7 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 AHV91393.1 - 0.0063 16.8 0.0 0.012 15.9 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 AHV91393.1 - 0.019 15.1 0.0 0.036 14.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 AHV91393.1 - 0.022 14.7 0.0 0.041 13.8 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_18 PF13238.6 AHV91393.1 - 0.045 14.3 0.0 0.07 13.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 AHV91393.1 - 0.048 13.2 0.0 0.073 12.7 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain MMR_HSR1 PF01926.23 AHV91393.1 - 0.051 13.7 0.0 0.09 12.9 0.0 1.4 1 0 0 1 1 1 0 50S ribosome-binding GTPase Zeta_toxin PF06414.12 AHV91393.1 - 0.16 11.2 0.0 0.26 10.6 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin DUF87 PF01935.17 AHV91393.1 - 0.16 12.0 0.0 0.26 11.3 0.0 1.2 1 0 0 1 1 1 0 Helicase HerA, central domain AAA_23 PF13476.6 AHV91393.1 - 0.2 12.1 0.1 0.3 11.6 0.1 1.1 1 0 0 1 1 1 0 AAA domain Glyco_transf_28 PF03033.20 AHV91394.1 - 3.2e-22 79.1 0.0 3.7e-22 78.9 0.0 1.0 1 0 0 1 1 1 1 Glycosyltransferase family 28 N-terminal domain BPD_transp_2 PF02653.16 AHV91396.1 - 5.1e-36 124.2 34.2 7.5e-36 123.7 34.2 1.2 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component ABC_tran PF00005.27 AHV91396.1 - 4.8e-29 101.6 0.0 7.1e-29 101.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.8 AHV91396.1 - 2.7e-09 36.7 0.2 5.3e-09 35.8 0.2 1.5 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_21 PF13304.6 AHV91396.1 - 1.7e-06 28.0 2.0 0.0037 17.1 0.1 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 AHV91396.1 - 0.02 14.6 0.0 0.041 13.6 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.6 AHV91396.1 - 0.026 15.0 0.1 0.041 14.4 0.1 1.2 1 0 0 1 1 1 0 AAA domain SMC_N PF02463.19 AHV91396.1 - 0.072 12.5 0.5 1.7 8.0 0.2 2.1 1 1 0 2 2 2 0 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 AHV91396.1 - 0.16 11.8 0.1 0.34 10.8 0.0 1.5 2 0 0 2 2 2 0 RsgA GTPase OsmC PF02566.19 AHV91397.1 - 1.1e-18 67.6 0.2 1.6e-18 67.0 0.0 1.3 2 0 0 2 2 2 1 OsmC-like protein adh_short_C2 PF13561.6 AHV91398.1 - 2.4e-34 118.9 0.0 3e-34 118.6 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 AHV91398.1 - 2.4e-26 92.4 0.0 3.3e-26 91.9 0.0 1.2 1 0 0 1 1 1 1 short chain dehydrogenase Epimerase PF01370.21 AHV91398.1 - 1.2e-08 34.7 0.0 3.9e-08 33.0 0.0 1.7 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family KR PF08659.10 AHV91398.1 - 0.00021 21.3 2.0 0.0048 16.8 2.0 2.2 1 1 0 1 1 1 1 KR domain RmlD_sub_bind PF04321.17 AHV91398.1 - 0.0053 15.9 0.0 0.0069 15.5 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain OKR_DC_1 PF01276.20 AHV91399.1 - 1.9e-140 468.3 0.0 6.2e-140 466.6 0.0 1.8 2 0 0 2 2 2 1 Orn/Lys/Arg decarboxylase, major domain OKR_DC_1_C PF03711.15 AHV91399.1 - 2.5e-46 157.3 0.1 5.4e-46 156.2 0.1 1.6 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, C-terminal domain OKR_DC_1_N PF03709.15 AHV91399.1 - 1.2e-19 70.6 0.6 2.2e-19 69.7 0.6 1.5 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, N-terminal domain FtsK_SpoIIIE PF01580.18 AHV91399.1 - 0.0086 15.5 0.0 1.5 8.1 0.0 2.2 2 0 0 2 2 2 2 FtsK/SpoIIIE family LysR_substrate PF03466.20 AHV91400.1 - 4.5e-13 49.1 0.1 5.5e-13 48.8 0.1 1.1 1 0 0 1 1 1 1 LysR substrate binding domain AbiEii PF08843.11 AHV91401.1 - 2.7e-33 115.9 0.2 3.4e-33 115.6 0.2 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase AbiEii toxin, Type IV TA system GATase_5 PF13507.6 AHV91402.1 - 1e-96 323.0 0.0 1.4e-96 322.6 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain AIRS_C PF02769.22 AHV91402.1 - 5.1e-14 52.7 0.1 1.1e-13 51.7 0.1 1.5 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain Lyase_1 PF00206.20 AHV91403.1 - 5.1e-45 154.2 0.0 9.3e-45 153.4 0.0 1.4 1 0 0 1 1 1 1 Lyase ASL_C2 PF14698.6 AHV91403.1 - 9.7e-17 61.5 0.1 3.2e-16 59.8 0.1 2.0 1 0 0 1 1 1 1 Argininosuccinate lyase C-terminal DUF2937 PF11157.8 AHV91403.1 - 1.3 8.8 8.1 0.18 11.5 1.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2937) DAGK_cat PF00781.24 AHV91405.1 - 1.6e-16 60.0 0.2 2.6e-16 59.4 0.2 1.3 1 0 0 1 1 1 1 Diacylglycerol kinase catalytic domain NAD_kinase PF01513.21 AHV91405.1 - 0.0063 15.7 0.2 0.0084 15.3 0.2 1.2 1 0 0 1 1 1 1 ATP-NAD kinase GMC_oxred_N PF00732.19 AHV91406.1 - 1.6e-85 287.1 0.0 2.2e-85 286.6 0.0 1.2 1 0 0 1 1 1 1 GMC oxidoreductase GMC_oxred_C PF05199.13 AHV91406.1 - 1.1e-38 133.0 0.2 1.9e-38 132.2 0.2 1.4 1 0 0 1 1 1 1 GMC oxidoreductase Lycopene_cycl PF05834.12 AHV91406.1 - 1e-05 24.8 0.1 2e-05 23.9 0.1 1.4 1 0 0 1 1 1 1 Lycopene cyclase protein FAD_binding_2 PF00890.24 AHV91406.1 - 3e-05 23.3 0.6 0.2 10.7 0.2 2.7 3 0 0 3 3 3 2 FAD binding domain NAD_binding_8 PF13450.6 AHV91406.1 - 0.00098 19.3 0.3 0.0056 16.9 0.1 2.5 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 AHV91406.1 - 0.0056 16.0 0.0 0.038 13.2 0.0 2.0 2 0 0 2 2 2 1 Thi4 family Pyr_redox_2 PF07992.14 AHV91406.1 - 0.014 14.6 0.0 0.17 11.1 0.0 2.2 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 AHV91406.1 - 0.026 14.1 5.1 0.35 10.4 5.1 2.6 1 1 0 1 1 1 0 FAD dependent oxidoreductase Transketolase_C PF02780.20 AHV91407.1 - 3.6e-28 97.9 0.0 5.3e-28 97.4 0.0 1.3 1 0 0 1 1 1 1 Transketolase, C-terminal domain Transket_pyr PF02779.24 AHV91407.1 - 4.1e-23 82.0 0.0 7.7e-23 81.1 0.0 1.4 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Pribosyltran PF00156.27 AHV91408.1 - 1.2e-16 60.6 0.0 1.8e-16 60.1 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 AHV91408.1 - 8.5e-05 22.1 0.0 0.00011 21.8 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 AHV91408.1 - 0.00082 18.9 0.1 0.0012 18.4 0.1 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase Fe-ADH PF00465.19 AHV91409.1 - 2.3e-106 355.7 7.6 2.6e-106 355.5 7.6 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.6 AHV91409.1 - 1.3e-12 48.0 9.1 1.7e-10 41.0 9.1 2.1 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase Transcrip_reg PF01709.20 AHV91410.1 - 2.3e-94 315.3 0.0 2.6e-94 315.2 0.0 1.0 1 0 0 1 1 1 1 Transcriptional regulator YfcL PF08891.11 AHV91410.1 - 0.11 12.8 0.0 0.24 11.8 0.0 1.6 1 0 0 1 1 1 0 YfcL protein Sigma54_DBD PF04552.13 AHV91412.1 - 3.6e-60 202.3 0.1 5.5e-60 201.7 0.1 1.3 1 0 0 1 1 1 1 Sigma-54, DNA binding domain Sigma54_CBD PF04963.13 AHV91412.1 - 6.7e-52 175.9 0.0 1.4e-51 174.8 0.0 1.6 1 0 0 1 1 1 1 Sigma-54 factor, core binding domain Sigma54_AID PF00309.20 AHV91412.1 - 3.2e-13 49.3 7.2 3.2e-13 49.3 7.2 2.7 3 0 0 3 3 3 1 Sigma-54 factor, Activator interacting domain (AID) HTH_38 PF13936.6 AHV91412.1 - 0.053 13.3 0.0 0.17 11.7 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain MlaE PF02405.16 AHV91413.1 - 2.3e-66 223.5 22.1 2.9e-66 223.2 22.1 1.1 1 0 0 1 1 1 1 Permease MlaE STAS_2 PF13466.6 AHV91413.1 - 0.0084 16.4 0.4 0.027 14.8 0.4 2.0 1 0 0 1 1 1 1 STAS domain Amidase PF01425.21 AHV91414.1 - 7.1e-81 272.5 0.9 3.8e-80 270.1 0.9 2.2 1 1 0 1 1 1 1 Amidase DUF3025 PF11227.8 AHV91414.1 - 0.027 14.3 0.1 0.049 13.4 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3025) T3SS_HrpK1 PF16937.5 AHV91414.1 - 0.04 13.6 0.0 0.077 12.7 0.0 1.3 1 0 0 1 1 1 0 Type III secretion system translocator protein, HrpF Bac_DNA_binding PF00216.21 AHV91415.1 - 2.5e-28 98.1 0.0 2.9e-28 97.9 0.0 1.0 1 0 0 1 1 1 1 Bacterial DNA-binding protein HU-HIG PF18291.1 AHV91415.1 - 8.8e-06 25.8 0.0 1.1e-05 25.6 0.0 1.1 1 0 0 1 1 1 1 HU domain fused to wHTH, Ig, or Glycine-rich motif TetR_C_30 PF17939.1 AHV91415.1 - 0.00092 19.4 0.1 0.0014 18.8 0.1 1.2 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain HU-CCDC81_bac_2 PF18175.1 AHV91415.1 - 0.05 13.5 0.0 0.081 12.8 0.0 1.3 1 0 0 1 1 1 0 CCDC81-like prokaryotic HU domain 2 ABC2_membrane_3 PF12698.7 AHV91416.1 - 3.7e-31 108.5 6.9 4.5e-31 108.2 6.9 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 AHV91416.1 - 6.8e-21 74.7 13.4 6.8e-21 74.7 13.4 1.9 3 0 0 3 3 3 1 ABC-2 type transporter ABC2_membrane_2 PF12679.7 AHV91416.1 - 2.6e-14 53.2 20.5 4.2e-14 52.5 20.5 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 AHV91416.1 - 2.1e-05 24.6 8.8 2.1e-05 24.6 8.8 2.6 2 1 1 3 3 3 1 ABC-2 family transporter protein DUF454 PF04304.13 AHV91416.1 - 0.05 13.6 0.2 0.05 13.6 0.2 3.5 3 1 1 4 4 4 0 Protein of unknown function (DUF454) PaaA_PaaC PF05138.12 AHV91417.1 - 4.6e-05 22.7 0.0 9.2e-05 21.7 0.0 1.5 1 0 0 1 1 1 1 Phenylacetic acid catabolic protein AMP-binding PF00501.28 AHV91418.1 - 2.9e-12 45.9 0.0 5.3e-12 45.0 0.0 1.4 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C_2 PF14535.6 AHV91418.1 - 0.0045 17.3 0.0 0.0082 16.4 0.0 1.4 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain DUF1918 PF08940.11 AHV91418.1 - 0.049 13.3 0.2 0.15 11.7 0.2 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF1918) Peptidase_S51 PF03575.17 AHV91419.1 - 3.5e-51 173.8 0.0 3.9e-51 173.6 0.0 1.0 1 0 0 1 1 1 1 Peptidase family S51 GGDEF PF00990.21 AHV91420.1 - 7.2e-46 155.9 0.0 1.5e-45 154.8 0.0 1.6 2 0 0 2 2 2 1 Diguanylate cyclase, GGDEF domain dCache_1 PF02743.18 AHV91420.1 - 0.00091 19.1 0.0 0.0015 18.4 0.0 1.2 1 0 0 1 1 1 1 Cache domain GGDEF_2 PF17853.1 AHV91420.1 - 0.0032 17.7 0.3 0.0032 17.7 0.3 2.9 3 1 0 3 3 3 1 GGDEF-like domain DUF4148 PF13663.6 AHV91420.1 - 1.2 9.3 7.0 5.1 7.4 2.4 3.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4148) HAMP PF00672.25 AHV91420.1 - 1.6 9.2 5.6 0.85 10.1 0.5 3.2 4 0 0 4 4 4 0 HAMP domain rve PF00665.26 AHV91421.1 - 2.9e-32 111.3 0.7 4.3e-32 110.8 0.1 1.6 2 0 0 2 2 1 1 Integrase core domain LZ_Tnp_IS481 PF13011.6 AHV91421.1 - 7.7e-22 77.6 2.7 1.1e-19 70.7 0.4 2.6 1 1 1 2 2 2 1 leucine-zipper of insertion element IS481 rve_3 PF13683.6 AHV91421.1 - 5e-19 67.8 2.7 1.2e-18 66.6 2.7 1.7 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.6 AHV91421.1 - 6.1e-17 60.9 4.4 1.2e-07 31.3 0.1 2.7 2 0 0 2 2 2 2 Homeodomain-like domain HTH_28 PF13518.6 AHV91421.1 - 1.5e-15 57.1 6.5 5.9e-11 42.3 0.1 3.4 4 0 0 4 4 3 2 Helix-turn-helix domain HTH_29 PF13551.6 AHV91421.1 - 9.8e-12 44.7 0.6 2.6e-06 27.4 0.0 2.6 2 0 0 2 2 2 2 Winged helix-turn helix HTH_32 PF13565.6 AHV91421.1 - 9.4e-11 42.2 0.7 9.4e-11 42.2 0.7 2.4 2 1 0 2 2 2 1 Homeodomain-like domain HTH_38 PF13936.6 AHV91421.1 - 1.5e-06 27.9 0.6 5.1e-06 26.1 0.5 2.1 2 0 0 2 2 1 1 Helix-turn-helix domain MarR_2 PF12802.7 AHV91421.1 - 8e-06 25.6 3.1 9.5e-05 22.2 1.2 2.6 2 0 0 2 2 2 1 MarR family HTH_31 PF13560.6 AHV91421.1 - 1.4e-05 25.4 1.7 0.00059 20.1 0.4 3.2 3 0 0 3 3 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 AHV91421.1 - 3e-05 23.6 0.1 0.0064 16.1 0.3 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 AHV91421.1 - 4.6e-05 22.9 0.1 0.00056 19.4 0.2 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 YdaS_antitoxin PF15943.5 AHV91421.1 - 0.00022 21.0 0.2 0.24 11.3 0.0 2.8 2 0 0 2 2 2 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_Tnp_ISL3 PF13542.6 AHV91421.1 - 0.00023 20.5 8.5 0.002 17.5 0.6 3.9 4 0 0 4 4 3 1 Helix-turn-helix domain of transposase family ISL3 HTH_24 PF13412.6 AHV91421.1 - 0.00028 20.4 0.2 0.0021 17.6 0.3 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_3 PF01381.22 AHV91421.1 - 0.00032 20.7 0.7 0.013 15.5 0.3 2.5 2 0 0 2 2 2 1 Helix-turn-helix HTH_Crp_2 PF13545.6 AHV91421.1 - 0.0004 20.3 0.3 0.0027 17.6 0.2 2.3 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain Trp_repressor PF01371.19 AHV91421.1 - 0.00081 19.5 0.2 0.006 16.7 0.1 2.2 2 0 0 2 2 2 1 Trp repressor protein CENP-B_N PF04218.13 AHV91421.1 - 0.0016 18.0 0.0 1.6 8.5 0.1 2.3 2 0 0 2 2 2 1 CENP-B N-terminal DNA-binding domain LacI PF00356.21 AHV91421.1 - 0.0017 18.1 1.8 0.0046 16.7 0.7 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family Fe_dep_repress PF01325.19 AHV91421.1 - 0.002 18.3 0.0 0.034 14.4 0.1 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.20 AHV91421.1 - 0.0023 17.8 0.0 0.93 9.4 0.0 2.5 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 AHV91421.1 - 0.0025 17.6 1.3 0.035 13.9 0.7 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_psq PF05225.16 AHV91421.1 - 0.0025 17.5 0.7 2.3 8.0 0.4 2.9 3 0 0 3 3 3 1 helix-turn-helix, Psq domain HTH_11 PF08279.12 AHV91421.1 - 0.0026 17.7 0.4 0.015 15.3 0.5 2.2 2 0 0 2 2 2 1 HTH domain SpoIIID PF12116.8 AHV91421.1 - 0.0026 17.8 0.0 1.1 9.4 0.0 2.4 2 0 0 2 2 2 1 Stage III sporulation protein D HTH_AsnC-type PF13404.6 AHV91421.1 - 0.0036 17.1 2.7 0.045 13.6 1.1 2.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain RepB PF07506.11 AHV91421.1 - 0.0042 17.2 0.1 0.55 10.3 0.1 2.3 1 1 1 2 2 2 1 RepB plasmid partitioning protein HTH_17 PF12728.7 AHV91421.1 - 0.0043 17.2 0.7 6.1 7.1 0.0 3.3 3 1 0 3 3 3 0 Helix-turn-helix domain HTH_Tnp_1 PF01527.20 AHV91421.1 - 0.005 17.1 0.5 0.11 12.8 0.0 2.7 1 1 1 2 2 2 1 Transposase GntR PF00392.21 AHV91421.1 - 0.0053 16.4 0.8 0.5 10.1 0.3 2.5 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_10 PF04967.12 AHV91421.1 - 0.0077 16.0 0.1 0.049 13.4 0.2 2.2 2 0 0 2 2 2 1 HTH DNA binding domain HTH_35 PF13693.6 AHV91421.1 - 0.0093 16.0 1.5 0.073 13.1 0.6 2.7 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding UPF0175 PF03683.13 AHV91421.1 - 0.014 15.1 0.4 0.1 12.3 0.1 2.4 2 1 0 2 2 2 0 Uncharacterised protein family (UPF0175) HTH_30 PF13556.6 AHV91421.1 - 0.015 15.1 0.1 2 8.3 0.0 2.6 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain HTH_37 PF13744.6 AHV91421.1 - 0.016 15.2 0.1 0.13 12.3 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Tnp_4 PF13613.6 AHV91421.1 - 0.016 14.9 0.1 0.067 12.9 0.0 2.0 2 0 0 2 2 1 0 Helix-turn-helix of DDE superfamily endonuclease HTH_36 PF13730.6 AHV91421.1 - 0.02 14.8 0.1 0.58 10.2 0.0 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain KORA PF16509.5 AHV91421.1 - 0.034 14.4 0.1 3.6 8.0 0.0 3.0 3 0 0 3 3 3 0 TrfB plasmid transcriptional repressor MarR PF01047.22 AHV91421.1 - 0.045 13.7 0.1 0.14 12.1 0.1 1.8 2 0 0 2 2 1 0 MarR family DDE_Tnp_IS240 PF13610.6 AHV91421.1 - 0.048 13.9 0.1 0.071 13.3 0.1 1.3 1 0 0 1 1 1 0 DDE domain Crp PF00325.20 AHV91421.1 - 0.05 13.3 3.2 0.062 13.0 0.5 2.5 3 0 0 3 3 3 0 Bacterial regulatory proteins, crp family P22_Cro PF14549.6 AHV91421.1 - 0.051 13.4 1.6 9.6 6.1 0.1 2.5 2 0 0 2 2 2 0 DNA-binding transcriptional regulator Cro DUF746 PF05344.11 AHV91421.1 - 0.085 12.7 0.1 0.98 9.3 0.0 2.3 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) HTH_1 PF00126.27 AHV91421.1 - 0.1 12.5 2.8 4.7 7.2 0.5 2.6 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_26 PF13443.6 AHV91421.1 - 0.17 12.3 0.0 3.6 8.1 0.1 2.8 3 0 0 3 3 3 0 Cro/C1-type HTH DNA-binding domain HTH_8 PF02954.19 AHV91421.1 - 0.19 11.5 0.9 14 5.5 0.7 2.7 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family HTH_Tnp_Tc3_2 PF01498.18 AHV91421.1 - 0.27 11.5 2.6 0.47 10.7 0.1 2.6 3 0 0 3 3 1 0 Transposase HTH_33 PF13592.6 AHV91421.1 - 0.56 9.9 3.1 2.9 7.6 0.1 3.4 4 0 0 4 4 2 0 Winged helix-turn helix MerR PF00376.23 AHV91421.1 - 0.72 9.7 6.8 3.2 7.6 0.0 3.6 4 0 0 4 4 2 0 MerR family regulatory protein FTR1 PF03239.14 AHV91422.1 - 8.2e-21 74.5 0.5 9.5e-21 74.2 0.5 1.0 1 0 0 1 1 1 1 Iron permease FTR1 family Chromate_transp PF02417.15 AHV91422.1 - 0.0021 18.2 1.4 0.0026 17.9 1.4 1.2 1 0 0 1 1 1 1 Chromate transporter SfLAP PF11139.8 AHV91422.1 - 0.05 13.0 7.3 0.08 12.4 7.3 1.4 1 1 0 1 1 1 0 Sap, sulfolipid-1-addressing protein UPF0093 PF03653.13 AHV91422.1 - 0.075 13.3 0.8 0.12 12.6 0.8 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0093) Herpes_LMP1 PF05297.11 AHV91422.1 - 0.35 10.0 4.2 0.1 11.8 1.6 1.5 1 1 1 2 2 2 0 Herpesvirus latent membrane protein 1 (LMP1) DUF4131 PF13567.6 AHV91422.1 - 7.5 6.2 7.4 14 5.3 6.7 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) Metallophos PF00149.28 AHV91423.1 - 9e-11 42.6 0.0 1.4e-10 42.0 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 AHV91423.1 - 1.7e-05 25.1 0.0 6.4e-05 23.2 0.0 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain DUF1726 PF08351.11 AHV91423.1 - 0.093 12.7 0.0 0.18 11.8 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1726) TssN PF17555.2 AHV91424.1 - 0.014 14.8 0.9 0.016 14.6 0.9 1.1 1 0 0 1 1 1 0 Type VI secretion system, TssN 7TMR-DISM_7TM PF07695.11 AHV91424.1 - 0.043 13.7 5.5 0.05 13.5 5.5 1.1 1 0 0 1 1 1 0 7TM diverse intracellular signalling DUF4131 PF13567.6 AHV91424.1 - 0.8 9.3 6.5 1.2 8.7 6.5 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) CoA_transf_3 PF02515.17 AHV91425.1 - 8.2e-45 153.5 6.8 4.3e-42 144.6 0.8 3.0 2 2 0 2 2 2 2 CoA-transferase family III FAD-oxidase_C PF02913.19 AHV91426.1 - 1.6e-41 142.6 0.0 2.4e-41 142.0 0.0 1.2 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 AHV91426.1 - 6.1e-38 129.7 4.5 1.2e-37 128.8 4.5 1.4 1 0 0 1 1 1 1 FAD binding domain BBE PF08031.12 AHV91426.1 - 0.15 12.2 0.0 0.98 9.6 0.0 2.0 2 0 0 2 2 2 0 Berberine and berberine like HEAT_PBS PF03130.16 AHV91426.1 - 5.3 8.0 6.4 3.8 8.5 0.7 3.5 3 0 0 3 3 3 0 PBS lyase HEAT-like repeat BPD_transp_1 PF00528.22 AHV91427.1 - 3.8e-05 23.5 2.1 4.3e-05 23.3 2.1 1.0 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component DUF4040 PF13244.6 AHV91427.1 - 0.021 15.0 2.8 0.021 15.0 2.8 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4040) HemY_N PF07219.13 AHV91427.1 - 0.03 14.5 0.8 0.034 14.3 0.8 1.1 1 0 0 1 1 1 0 HemY protein N-terminus CBS PF00571.28 AHV91428.1 - 4.6e-05 23.8 0.0 5.5e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 CBS domain FecR PF04773.13 AHV91429.1 - 6.6e-20 71.6 0.0 9.8e-20 71.0 0.0 1.3 1 0 0 1 1 1 1 FecR protein DUF4880 PF16220.5 AHV91429.1 - 6.3e-10 38.8 14.2 6.3e-10 38.8 14.2 2.4 2 0 0 2 2 2 1 Domain of unknown function (DUF4880) Cupin_7 PF12973.7 AHV91429.1 - 0.15 12.0 0.0 0.29 11.1 0.0 1.4 1 0 0 1 1 1 0 ChrR Cupin-like domain DUF502 PF04367.13 AHV91430.1 - 2.8e-36 123.6 0.6 5.8e-36 122.6 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF502) Usp PF00582.26 AHV91431.1 - 3.2e-51 173.6 4.7 1.9e-27 96.5 2.4 2.0 2 0 0 2 2 2 2 Universal stress protein family NTP_transf_3 PF12804.7 AHV91431.1 - 0.077 13.4 6.1 0.14 12.5 1.1 3.0 1 1 1 2 2 2 0 MobA-like NTP transferase domain Bac_DNA_binding PF00216.21 AHV91432.1 - 1.7e-31 108.2 0.1 2e-31 108.1 0.1 1.0 1 0 0 1 1 1 1 Bacterial DNA-binding protein HU-HIG PF18291.1 AHV91432.1 - 1.3e-06 28.5 0.0 1.6e-06 28.2 0.0 1.1 1 0 0 1 1 1 1 HU domain fused to wHTH, Ig, or Glycine-rich motif HU-CCDC81_bac_2 PF18175.1 AHV91432.1 - 0.0003 20.6 0.0 0.00055 19.7 0.0 1.4 1 0 0 1 1 1 1 CCDC81-like prokaryotic HU domain 2 HU-CCDC81_euk_1 PF14908.6 AHV91432.1 - 0.0093 16.1 0.0 0.011 15.9 0.0 1.2 1 0 0 1 1 1 1 CCDC81 eukaryotic HU domain 1 HU-CCDC81_euk_2 PF18289.1 AHV91432.1 - 0.011 15.8 0.0 0.019 15.1 0.0 1.3 1 0 0 1 1 1 0 CCDC81 eukaryotic HU domain 2 HU-DNA_bdg PF14848.6 AHV91432.1 - 0.19 11.8 0.0 0.3 11.1 0.0 1.4 2 0 0 2 2 2 0 DNA-binding domain rve PF00665.26 AHV91433.1 - 2.9e-32 111.3 0.7 4.3e-32 110.8 0.1 1.6 2 0 0 2 2 1 1 Integrase core domain LZ_Tnp_IS481 PF13011.6 AHV91433.1 - 1.9e-21 76.3 2.6 1.1e-19 70.7 0.4 2.6 1 1 1 2 2 2 1 leucine-zipper of insertion element IS481 rve_3 PF13683.6 AHV91433.1 - 5.1e-19 67.8 2.7 1.2e-18 66.6 2.7 1.7 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.6 AHV91433.1 - 1.6e-16 59.6 4.2 1.2e-07 31.3 0.1 2.7 2 0 0 2 2 2 2 Homeodomain-like domain HTH_28 PF13518.6 AHV91433.1 - 5.9e-15 55.1 6.1 5.9e-11 42.3 0.1 3.4 4 0 0 4 4 3 2 Helix-turn-helix domain HTH_29 PF13551.6 AHV91433.1 - 1.8e-11 43.9 0.5 2.6e-06 27.4 0.0 2.6 2 0 0 2 2 2 2 Winged helix-turn helix HTH_32 PF13565.6 AHV91433.1 - 3.8e-10 40.2 0.7 3.8e-10 40.2 0.7 2.4 2 1 0 2 2 2 1 Homeodomain-like domain HTH_38 PF13936.6 AHV91433.1 - 5.4e-06 26.1 0.5 1.9e-05 24.3 0.4 2.1 2 0 0 2 2 1 1 Helix-turn-helix domain MarR_2 PF12802.7 AHV91433.1 - 3e-05 23.8 3.0 0.00037 20.3 1.1 2.6 2 0 0 2 2 2 1 MarR family HTH_31 PF13560.6 AHV91433.1 - 6.8e-05 23.1 1.5 0.0033 17.8 0.3 3.2 3 0 0 3 3 3 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 AHV91433.1 - 0.00013 21.4 0.1 0.0016 17.9 0.2 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 YdaS_antitoxin PF15943.5 AHV91433.1 - 0.0003 20.6 0.2 0.33 10.9 0.0 2.8 2 0 0 2 2 2 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT Sigma70_r4_2 PF08281.12 AHV91433.1 - 0.00043 19.9 0.1 0.092 12.4 0.2 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_Tnp_ISL3 PF13542.6 AHV91433.1 - 0.00057 19.3 8.6 0.0047 16.3 0.6 3.9 4 0 0 4 4 3 1 Helix-turn-helix domain of transposase family ISL3 HTH_24 PF13412.6 AHV91433.1 - 0.00062 19.3 0.2 0.0045 16.5 0.3 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_3 PF01381.22 AHV91433.1 - 0.00094 19.2 0.6 0.041 14.0 0.2 2.5 2 0 0 2 2 2 1 Helix-turn-helix LacI PF00356.21 AHV91433.1 - 0.0015 18.3 1.6 0.0044 16.8 0.6 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family Trp_repressor PF01371.19 AHV91433.1 - 0.0016 18.5 0.2 0.012 15.7 0.1 2.2 2 0 0 2 2 2 1 Trp repressor protein HTH_Crp_2 PF13545.6 AHV91433.1 - 0.002 18.1 0.3 0.013 15.4 0.1 2.3 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain SpoIIID PF12116.8 AHV91433.1 - 0.003 17.6 0.0 1.1 9.4 0.0 2.4 2 0 0 2 2 2 1 Stage III sporulation protein D HTH_Tnp_1 PF01527.20 AHV91433.1 - 0.0042 17.4 0.4 0.11 12.8 0.0 2.7 1 1 1 2 2 2 1 Transposase CENP-B_N PF04218.13 AHV91433.1 - 0.0046 16.6 0.0 3.7 7.2 0.0 2.3 2 0 0 2 2 2 1 CENP-B N-terminal DNA-binding domain Fe_dep_repress PF01325.19 AHV91433.1 - 0.0051 17.0 0.0 0.086 13.1 0.1 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.20 AHV91433.1 - 0.0056 16.5 0.0 2.2 8.2 0.0 2.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 AHV91433.1 - 0.0079 16.0 0.9 0.12 12.1 0.4 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_17 PF12728.7 AHV91433.1 - 0.0082 16.3 0.6 6.1 7.1 0.0 3.3 3 1 0 3 3 3 0 Helix-turn-helix domain HTH_AsnC-type PF13404.6 AHV91433.1 - 0.0095 15.7 2.3 0.13 12.1 0.9 2.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain GntR PF00392.21 AHV91433.1 - 0.013 15.1 0.8 1.2 8.8 0.3 2.6 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_psq PF05225.16 AHV91433.1 - 0.017 14.8 0.5 8.2 6.3 0.0 2.9 3 0 0 3 3 3 0 helix-turn-helix, Psq domain HTH_11 PF08279.12 AHV91433.1 - 0.026 14.5 0.5 0.15 12.0 0.5 2.2 2 0 0 2 2 2 0 HTH domain HTH_10 PF04967.12 AHV91433.1 - 0.027 14.2 0.0 0.17 11.7 0.1 2.2 2 0 0 2 2 2 0 HTH DNA binding domain RepB PF07506.11 AHV91433.1 - 0.03 14.4 0.1 3.7 7.6 0.1 2.3 1 1 1 2 2 2 0 RepB plasmid partitioning protein HTH_Tnp_4 PF13613.6 AHV91433.1 - 0.033 13.9 0.1 0.13 12.0 0.1 2.0 2 0 0 2 2 1 0 Helix-turn-helix of DDE superfamily endonuclease HTH_35 PF13693.6 AHV91433.1 - 0.034 14.2 1.2 0.3 11.2 0.4 2.7 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding HTH_30 PF13556.6 AHV91433.1 - 0.034 14.0 0.0 2 8.3 0.0 2.5 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain DDE_Tnp_IS240 PF13610.6 AHV91433.1 - 0.048 13.9 0.1 0.071 13.3 0.1 1.3 1 0 0 1 1 1 0 DDE domain P22_Cro PF14549.6 AHV91433.1 - 0.062 13.2 1.5 9.6 6.1 0.1 2.5 2 0 0 2 2 2 0 DNA-binding transcriptional regulator Cro HTH_37 PF13744.6 AHV91433.1 - 0.068 13.1 0.1 0.55 10.2 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain UPF0175 PF03683.13 AHV91433.1 - 0.073 12.8 0.3 0.56 10.0 0.1 2.4 2 1 0 2 2 2 0 Uncharacterised protein family (UPF0175) HTH_1 PF00126.27 AHV91433.1 - 0.098 12.6 1.9 7.3 6.6 0.2 2.6 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family Crp PF00325.20 AHV91433.1 - 0.11 12.2 2.8 0.16 11.6 0.4 2.6 3 0 0 3 3 3 0 Bacterial regulatory proteins, crp family DUF746 PF05344.11 AHV91433.1 - 0.11 12.3 0.1 0.98 9.3 0.0 2.3 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) MarR PF01047.22 AHV91433.1 - 0.11 12.4 0.1 0.36 10.8 0.1 1.8 2 0 0 2 2 1 0 MarR family KORA PF16509.5 AHV91433.1 - 0.14 12.5 0.1 14 6.0 0.0 3.0 3 0 0 3 3 3 0 TrfB plasmid transcriptional repressor HTH_36 PF13730.6 AHV91433.1 - 0.17 11.8 0.0 5.2 7.1 0.0 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_Tnp_Tc3_2 PF01498.18 AHV91433.1 - 0.38 11.0 2.7 0.63 10.3 0.1 2.6 3 0 0 3 3 1 0 Transposase MerR PF00376.23 AHV91433.1 - 0.77 9.6 6.8 3.2 7.6 0.0 3.6 4 0 0 4 4 2 0 MerR family regulatory protein Redoxin PF08534.10 AHV91434.1 - 8.4e-26 90.4 0.1 1.1e-25 90.1 0.1 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA PF00578.21 AHV91434.1 - 1.1e-22 80.2 0.0 1.4e-22 79.9 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Thioredoxin_8 PF13905.6 AHV91434.1 - 2e-09 37.7 0.0 2.8e-09 37.2 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_2 PF13098.6 AHV91434.1 - 5e-07 30.1 0.1 7.6e-07 29.6 0.1 1.3 1 0 0 1 1 1 1 Thioredoxin-like domain Thioredoxin PF00085.20 AHV91434.1 - 0.00026 20.9 0.1 0.018 15.0 0.1 2.1 2 0 0 2 2 2 1 Thioredoxin SCO1-SenC PF02630.14 AHV91434.1 - 0.00076 19.4 0.1 0.0013 18.6 0.1 1.5 1 1 1 2 2 2 1 SCO1/SenC GSHPx PF00255.19 AHV91434.1 - 0.0021 17.6 0.1 0.0032 17.0 0.1 1.2 1 0 0 1 1 1 1 Glutathione peroxidase AhpC-TSA_2 PF13911.6 AHV91434.1 - 0.039 14.1 0.0 0.063 13.4 0.0 1.3 1 0 0 1 1 1 0 AhpC/TSA antioxidant enzyme EamA PF00892.20 AHV91435.1 - 1.4e-24 86.8 30.8 6.7e-16 58.7 6.1 2.0 2 0 0 2 2 2 2 EamA-like transporter family Acetyltransf_CG PF14542.6 AHV91436.1 - 1.6e-18 66.6 0.0 1.7e-18 66.5 0.0 1.0 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase ACR_tran PF00873.19 AHV91437.1 - 2.9e-100 336.5 2.7 3.3e-100 336.3 2.7 1.0 1 0 0 1 1 1 1 AcrB/AcrD/AcrF family LysE PF01810.18 AHV91438.1 - 1.5e-30 106.1 5.5 1.7e-30 105.9 5.5 1.0 1 0 0 1 1 1 1 LysE type translocator TerC PF03741.16 AHV91438.1 - 0.1 12.2 3.2 0.19 11.4 3.2 1.6 1 1 0 1 1 1 0 Integral membrane protein TerC family SBP_bac_6 PF13343.6 AHV91439.1 - 6.9e-32 110.8 0.1 9.2e-32 110.4 0.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 AHV91439.1 - 2.2e-25 89.8 7.2 3.2e-25 89.2 7.2 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 AHV91439.1 - 1.6e-23 83.9 0.1 2.4e-23 83.4 0.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 AHV91439.1 - 1.1e-11 45.3 2.5 1.4e-11 44.9 2.5 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like_2 PF12849.7 AHV91439.1 - 0.018 14.7 0.1 1.1 8.9 0.1 2.3 2 0 0 2 2 2 0 PBP superfamily domain CCG PF02754.16 AHV91440.1 - 5.9e-20 71.3 0.1 5.8e-08 32.8 0.0 3.2 3 0 0 3 3 3 2 Cysteine-rich domain Fer4_7 PF12838.7 AHV91440.1 - 4.8e-13 49.5 5.7 8.8e-13 48.6 5.7 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 AHV91440.1 - 6.6e-12 45.7 4.5 1.4e-11 44.7 4.5 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 AHV91440.1 - 2e-11 44.3 4.9 4.1e-11 43.3 4.9 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 AHV91440.1 - 2.5e-07 30.7 12.3 0.0012 19.2 2.1 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 AHV91440.1 - 1.5e-06 29.0 4.1 2.7e-06 28.2 4.1 1.4 1 0 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 AHV91440.1 - 1.6e-06 27.9 10.0 0.0034 17.4 1.5 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.27 AHV91440.1 - 4.1e-06 26.4 7.7 0.017 14.9 1.8 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 AHV91440.1 - 5.5e-06 26.4 9.6 0.00056 20.0 11.7 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 AHV91440.1 - 3.5e-05 23.7 14.6 0.014 15.5 4.0 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 AHV91440.1 - 7e-05 22.9 10.3 0.003 17.7 11.8 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_20 PF14691.6 AHV91440.1 - 0.002 17.9 1.9 0.26 11.1 0.1 2.4 2 0 0 2 2 2 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_21 PF14697.6 AHV91440.1 - 0.0069 16.5 10.8 0.054 13.6 9.6 2.7 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_13 PF13370.6 AHV91440.1 - 0.27 11.8 7.5 5.4 7.6 1.0 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 AHV91440.1 - 0.35 11.7 11.8 0.61 11.0 1.0 2.8 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 AHV91440.1 - 2 8.6 8.4 9.2 6.5 0.8 2.3 1 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 AHV91440.1 - 4.5 8.4 17.9 10 7.3 4.2 2.9 2 0 0 2 2 2 0 4Fe-4S binding domain Lar_restr_allev PF14354.6 AHV91440.1 - 4.5 7.7 6.9 80 3.7 0.1 3.5 3 1 0 4 4 3 0 Restriction alleviation protein Lar Ub-RnfH PF03658.14 AHV91441.1 - 4.6e-27 94.2 0.0 5.7e-27 93.9 0.0 1.1 1 0 0 1 1 1 1 RnfH family Ubiquitin CPSase_L_D2 PF02786.17 AHV91442.1 - 1.5e-78 263.1 0.0 2.2e-78 262.6 0.0 1.2 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Biotin_carb_N PF00289.22 AHV91442.1 - 1.1e-46 157.9 0.0 3.1e-46 156.5 0.0 1.8 1 0 0 1 1 1 1 Biotin carboxylase, N-terminal domain Biotin_carb_C PF02785.19 AHV91442.1 - 8.9e-40 135.1 0.0 1.7e-39 134.2 0.0 1.5 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain Dala_Dala_lig_C PF07478.13 AHV91442.1 - 2.6e-07 30.4 0.0 6.2e-07 29.2 0.0 1.5 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp PF02222.22 AHV91442.1 - 4.9e-06 26.2 0.0 9.8e-06 25.2 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.14 AHV91442.1 - 2.4e-05 24.4 0.0 4.8e-05 23.5 0.0 1.6 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.19 AHV91442.1 - 0.00071 19.4 0.0 0.0011 18.7 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Oxidored_nitro PF00148.19 AHV91442.1 - 0.041 12.6 0.0 0.12 11.0 0.0 1.7 2 0 0 2 2 2 0 Nitrogenase component 1 type Oxidoreductase TauE PF01925.19 AHV91444.1 - 6.1e-52 176.6 40.7 7.4e-52 176.3 40.7 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE TerC PF03741.16 AHV91444.1 - 0.019 14.7 0.4 0.019 14.7 0.4 2.7 3 1 0 3 3 3 0 Integral membrane protein TerC family GPHR_N PF12537.8 AHV91444.1 - 0.081 13.0 0.4 0.18 11.9 0.4 1.6 1 0 0 1 1 1 0 The Golgi pH Regulator (GPHR) Family N-terminal FixQ PF05545.11 AHV91444.1 - 0.13 12.2 0.4 0.13 12.2 0.4 2.4 2 0 0 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ HTH_18 PF12833.7 AHV91445.1 - 5.7e-20 71.4 1.6 1.1e-19 70.5 1.6 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain DJ-1_PfpI PF01965.24 AHV91445.1 - 2.5e-12 46.9 0.0 3.7e-12 46.3 0.0 1.3 1 0 0 1 1 1 1 DJ-1/PfpI family HTH_AraC PF00165.23 AHV91445.1 - 1.9e-06 27.8 0.0 0.026 14.6 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family PsiA PF06952.11 AHV91445.1 - 0.059 12.6 0.4 0.084 12.1 0.4 1.2 1 0 0 1 1 1 0 PsiA protein GATase_3 PF07685.14 AHV91445.1 - 0.23 11.1 0.0 0.33 10.5 0.0 1.2 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain DctP PF03480.13 AHV91446.1 - 1.3e-74 251.1 0.0 1.5e-74 250.9 0.0 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein, family 7 LysE PF01810.18 AHV91447.1 - 1.6e-27 96.2 12.3 1.8e-27 96.0 12.3 1.0 1 0 0 1 1 1 1 LysE type translocator Slp PF03843.13 AHV91447.1 - 0.13 11.7 0.0 0.18 11.2 0.0 1.1 1 0 0 1 1 1 0 Outer membrane lipoprotein Slp family TctC PF03401.14 AHV91448.1 - 1.6e-48 165.1 0.3 1.2e-47 162.3 0.1 1.9 1 1 1 2 2 2 1 Tripartite tricarboxylate transporter family receptor SBP_bac_3 PF00497.20 AHV91448.1 - 0.011 15.1 0.0 0.017 14.5 0.0 1.3 1 0 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 Fe-ADH PF00465.19 AHV91449.1 - 2.8e-75 253.4 7.8 3.2e-75 253.2 7.8 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.6 AHV91449.1 - 4.7e-12 46.2 0.4 5.9e-12 45.8 0.4 1.2 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase AIRC PF00731.20 AHV91449.1 - 0.0049 16.5 1.1 0.0049 16.5 1.1 2.0 2 1 0 2 2 2 1 AIR carboxylase Bac_DnaA PF00308.18 AHV91451.1 - 2e-86 289.4 0.1 4.7e-86 288.1 0.0 1.6 2 0 0 2 2 2 1 Bacterial dnaA protein Bac_DnaA_C PF08299.11 AHV91451.1 - 7.9e-32 109.1 0.0 2.7e-31 107.4 0.0 1.9 2 0 0 2 2 2 1 Bacterial dnaA protein helix-turn-helix DnaA_N PF11638.8 AHV91451.1 - 3.1e-18 65.3 0.2 5.9e-18 64.4 0.2 1.5 1 0 0 1 1 1 1 DnaA N-terminal domain IstB_IS21 PF01695.17 AHV91451.1 - 2.3e-12 47.0 0.0 4.1e-12 46.2 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA PF00004.29 AHV91451.1 - 2.6e-06 27.9 0.0 6.8e-06 26.5 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AFG1_ATPase PF03969.16 AHV91451.1 - 0.0036 16.2 0.0 0.0081 15.1 0.0 1.5 1 1 0 1 1 1 1 AFG1-like ATPase AAA_16 PF13191.6 AHV91451.1 - 0.0058 17.0 0.0 0.026 14.9 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain ATPase_2 PF01637.18 AHV91451.1 - 0.021 14.7 0.0 0.046 13.6 0.0 1.5 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea TsaE PF02367.17 AHV91451.1 - 0.031 14.3 0.0 0.086 12.9 0.0 1.8 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE RuvB_N PF05496.12 AHV91451.1 - 0.043 13.6 0.1 0.16 11.7 0.1 1.9 1 1 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain AAA_lid_4 PF17864.1 AHV91451.1 - 0.11 12.3 0.2 0.39 10.5 0.0 2.0 2 0 0 2 2 2 0 RuvB AAA lid domain RNA_helicase PF00910.22 AHV91451.1 - 0.11 12.9 0.0 0.26 11.7 0.0 1.7 1 0 0 1 1 1 0 RNA helicase ABC_tran PF00005.27 AHV91452.1 - 1.1e-57 194.4 0.0 1.6e-28 99.9 0.0 2.2 2 0 0 2 2 2 2 ABC transporter ABC2_membrane_3 PF12698.7 AHV91452.1 - 6.8e-39 133.9 7.8 9.2e-39 133.5 7.8 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 AHV91452.1 - 6.7e-17 61.7 9.4 1.1e-16 61.0 9.4 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein AAA_21 PF13304.6 AHV91452.1 - 1.8e-16 60.8 6.1 0.00011 22.2 0.1 4.2 3 1 0 4 4 4 4 AAA domain, putative AbiEii toxin, Type IV TA system ABC2_membrane PF01061.24 AHV91452.1 - 3.7e-12 46.1 22.3 3.7e-12 46.1 22.3 2.5 2 1 1 3 3 3 1 ABC-2 type transporter RsgA_GTPase PF03193.16 AHV91452.1 - 7.7e-06 25.9 0.6 0.0014 18.5 0.1 2.3 2 0 0 2 2 2 1 RsgA GTPase AAA_15 PF13175.6 AHV91452.1 - 8.1e-05 22.5 0.0 0.35 10.5 0.0 3.0 3 0 0 3 3 3 1 AAA ATPase domain AAA_16 PF13191.6 AHV91452.1 - 0.00041 20.8 0.5 1.3 9.4 0.1 2.7 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 AHV91452.1 - 0.00072 20.1 1.4 0.05 14.1 0.3 2.2 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 AHV91452.1 - 0.0024 17.6 2.9 0.43 10.4 0.2 2.6 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA PF00004.29 AHV91452.1 - 0.0037 17.7 0.1 5.7 7.4 0.0 2.8 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 AHV91452.1 - 0.005 17.1 1.8 1.4 9.1 0.1 2.9 2 1 0 2 2 2 1 AAA domain ABC2_membrane_4 PF12730.7 AHV91452.1 - 0.0051 16.8 7.5 0.013 15.5 7.5 1.7 1 0 0 1 1 1 1 ABC-2 family transporter protein AAA_30 PF13604.6 AHV91452.1 - 0.0078 15.9 0.0 4.6 6.9 0.0 2.5 2 0 0 2 2 2 1 AAA domain TsaE PF02367.17 AHV91452.1 - 0.011 15.7 2.4 2.2 8.3 0.0 3.2 3 0 0 3 3 3 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE DLIC PF05783.11 AHV91452.1 - 0.013 14.4 0.5 0.1 11.4 0.0 2.0 2 0 0 2 2 2 0 Dynein light intermediate chain (DLIC) SbcCD_C PF13558.6 AHV91452.1 - 0.017 15.3 0.0 21 5.4 0.0 3.3 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit AAA_24 PF13479.6 AHV91452.1 - 0.024 14.4 1.7 4 7.1 0.2 2.4 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 AHV91452.1 - 0.036 14.2 1.0 0.92 9.6 0.2 2.6 2 0 0 2 2 2 0 50S ribosome-binding GTPase PhoH PF02562.16 AHV91452.1 - 0.039 13.4 0.1 0.29 10.5 0.0 2.1 2 0 0 2 2 2 0 PhoH-like protein RNA_helicase PF00910.22 AHV91452.1 - 0.048 14.1 0.4 6.8 7.1 0.1 2.4 2 0 0 2 2 2 0 RNA helicase AAA_33 PF13671.6 AHV91452.1 - 0.067 13.4 0.6 12 6.1 0.0 2.9 3 1 0 3 3 2 0 AAA domain SRP54 PF00448.22 AHV91452.1 - 0.074 12.7 5.7 3.1 7.4 0.0 3.0 3 0 0 3 3 3 0 SRP54-type protein, GTPase domain AAA_5 PF07728.14 AHV91452.1 - 0.076 13.0 1.2 10 6.1 0.2 3.1 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) Keratin_assoc PF09775.9 AHV91452.1 - 0.078 12.6 4.7 0.17 11.6 4.7 1.5 1 0 0 1 1 1 0 Keratinocyte-associated protein 2 AAA_18 PF13238.6 AHV91452.1 - 0.084 13.4 0.4 1.5 9.3 0.1 2.4 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.15 AHV91452.1 - 0.15 12.0 0.2 3.1 7.7 0.0 2.2 2 0 0 2 2 2 0 Rad17 P-loop domain AAA_28 PF13521.6 AHV91452.1 - 0.2 11.9 6.8 4 7.6 0.0 3.3 4 0 0 4 4 3 0 AAA domain AAA_25 PF13481.6 AHV91452.1 - 0.45 10.1 4.6 0.73 9.4 0.1 3.0 2 1 0 2 2 2 0 AAA domain MeaB PF03308.16 AHV91452.1 - 0.46 9.4 1.7 3.4 6.6 0.2 2.1 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB NACHT PF05729.12 AHV91452.1 - 6.4 6.7 5.3 23 4.9 0.6 2.5 2 0 0 2 2 2 0 NACHT domain MFS_1 PF07690.16 AHV91453.1 - 2.4e-28 99.1 53.3 2.4e-28 99.1 53.3 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_4 PF06779.14 AHV91453.1 - 0.12 11.6 42.6 0.35 10.1 42.6 2.0 1 1 0 1 1 1 0 Uncharacterised MFS-type transporter YbfB rve_3 PF13683.6 AHV91454.1 - 4e-26 90.6 0.1 4.7e-26 90.3 0.1 1.1 1 0 0 1 1 1 1 Integrase core domain rve_2 PF13333.6 AHV91454.1 - 5.8e-08 32.8 0.0 7.4e-08 32.5 0.0 1.1 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AHV91454.1 - 0.003 17.8 0.0 0.0035 17.6 0.0 1.1 1 0 0 1 1 1 1 DDE domain PIN_3 PF13470.6 AHV91455.1 - 1.3e-10 42.0 0.1 2.6e-10 41.1 0.1 1.4 1 0 0 1 1 1 1 PIN domain FMN_dh PF01070.18 AHV91456.1 - 2e-132 441.4 0.6 2.3e-132 441.3 0.6 1.0 1 0 0 1 1 1 1 FMN-dependent dehydrogenase NMO PF03060.15 AHV91456.1 - 1.2e-06 28.2 1.8 3.8e-06 26.5 1.8 1.7 2 0 0 2 2 2 1 Nitronate monooxygenase Glu_synthase PF01645.17 AHV91456.1 - 4.6e-05 22.7 0.7 0.00017 20.9 0.5 1.9 2 0 0 2 2 2 1 Conserved region in glutamate synthase IMPDH PF00478.25 AHV91456.1 - 0.00012 21.2 0.7 0.0006 18.9 0.5 2.1 1 1 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain His_biosynth PF00977.21 AHV91456.1 - 0.0073 15.8 0.3 0.036 13.5 0.2 1.9 1 1 1 2 2 2 1 Histidine biosynthesis protein IGPS PF00218.21 AHV91456.1 - 0.021 14.0 0.0 0.04 13.1 0.0 1.3 1 0 0 1 1 1 0 Indole-3-glycerol phosphate synthase ThiG PF05690.14 AHV91456.1 - 0.055 12.8 0.3 0.12 11.6 0.3 1.6 1 1 0 1 1 1 0 Thiazole biosynthesis protein ThiG Dus PF01207.17 AHV91456.1 - 0.13 11.4 0.2 2.7 7.0 0.2 2.5 2 1 1 3 3 3 0 Dihydrouridine synthase (Dus) Sod_Fe_C PF02777.18 AHV91458.1 - 4e-39 132.9 0.1 8.2e-39 131.9 0.0 1.5 2 0 0 2 2 2 1 Iron/manganese superoxide dismutases, C-terminal domain Sod_Fe_N PF00081.22 AHV91458.1 - 3.1e-31 107.7 0.2 4.9e-31 107.1 0.2 1.3 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, alpha-hairpin domain tRNA_U5-meth_tr PF05958.11 AHV91459.1 - 4.8e-16 58.7 0.0 2.1e-14 53.3 0.0 2.1 1 1 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase Methyltransf_25 PF13649.6 AHV91459.1 - 0.00094 19.8 0.0 0.0031 18.2 0.0 1.9 1 0 0 1 1 1 1 Methyltransferase domain TRAM PF01938.20 AHV91459.1 - 0.00099 19.1 0.0 0.002 18.0 0.0 1.5 1 0 0 1 1 1 1 TRAM domain Methyltransf_31 PF13847.6 AHV91459.1 - 0.0098 15.7 0.0 0.016 15.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 AHV91459.1 - 0.016 14.3 0.0 0.025 13.7 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_11 PF08241.12 AHV91459.1 - 0.028 15.1 0.0 0.096 13.3 0.0 2.0 1 0 0 1 1 1 0 Methyltransferase domain Met_10 PF02475.16 AHV91459.1 - 0.038 13.7 0.0 0.083 12.6 0.0 1.5 1 0 0 1 1 1 0 Met-10+ like-protein MTS PF05175.14 AHV91459.1 - 0.089 12.3 0.0 0.16 11.5 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase small domain PCMT PF01135.19 AHV91459.1 - 0.15 11.8 0.0 0.28 10.9 0.0 1.4 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PQQ PF01011.21 AHV91460.1 - 6.4e-29 98.5 0.6 0.00054 19.8 0.0 7.6 7 0 0 7 7 7 6 PQQ enzyme repeat PQQ_2 PF13360.6 AHV91460.1 - 6.4e-19 68.5 6.4 1.7e-07 31.1 1.0 3.9 2 1 1 3 3 3 3 PQQ-like domain PQQ_3 PF13570.6 AHV91460.1 - 3.6e-10 40.0 19.5 0.069 13.7 0.1 8.0 7 1 0 7 7 7 4 PQQ-like domain DUF4905 PF16248.5 AHV91460.1 - 0.14 12.1 0.8 60 3.6 0.0 4.3 5 0 0 5 5 5 0 Domain of unknown function (DUF4905) HTH_1 PF00126.27 AHV91461.1 - 7e-17 61.1 2.0 7e-17 61.1 2.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family LysR_substrate PF03466.20 AHV91461.1 - 2.2e-05 24.0 0.1 2.2e-05 24.0 0.1 1.7 2 1 0 2 2 2 1 LysR substrate binding domain HTH_20 PF12840.7 AHV91461.1 - 0.055 13.5 0.4 0.25 11.4 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HI0933_like PF03486.14 AHV91462.1 - 4.7e-93 312.1 0.0 5.3e-93 311.9 0.0 1.0 1 0 0 1 1 1 1 HI0933-like protein GlnD_UR_UTase PF08335.11 AHV91463.1 - 3.8e-30 104.9 3.7 3.8e-30 104.9 1.0 2.4 2 0 0 2 2 2 1 GlnD PII-uridylyltransferase HD PF01966.22 AHV91463.1 - 1.2e-09 38.4 0.9 4.1e-09 36.7 0.9 1.9 1 0 0 1 1 1 1 HD domain ACT PF01842.25 AHV91463.1 - 1.6e-06 27.8 0.0 9.2e-05 22.1 0.0 3.1 2 0 0 2 2 2 1 ACT domain NTP_transf_2 PF01909.23 AHV91463.1 - 7.1e-06 26.2 0.0 2.5e-05 24.5 0.0 1.9 2 0 0 2 2 2 1 Nucleotidyltransferase domain DUF294 PF03445.13 AHV91463.1 - 0.016 15.0 0.0 0.047 13.5 0.0 1.7 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 ACT_6 PF13740.6 AHV91463.1 - 0.019 15.0 0.0 0.074 13.1 0.0 2.0 1 0 0 1 1 1 0 ACT domain ACT_4 PF13291.6 AHV91463.1 - 0.021 15.4 0.0 0.079 13.6 0.0 2.0 2 0 0 2 2 2 0 ACT domain RNase_PH PF01138.21 AHV91463.1 - 0.14 12.7 0.0 0.28 11.7 0.0 1.5 1 0 0 1 1 1 0 3' exoribonuclease family, domain 1 KIX PF02172.16 AHV91463.1 - 0.15 12.4 0.2 0.47 10.8 0.1 1.9 2 0 0 2 2 2 0 KIX domain Isochorismatase PF00857.20 AHV91464.1 - 2.4e-29 102.7 0.1 8.7e-29 100.9 0.1 1.7 1 1 0 1 1 1 1 Isochorismatase family Glyco_transf_4 PF13439.6 AHV91464.1 - 0.022 14.7 0.8 1.3 9.0 0.1 2.3 1 1 0 2 2 2 0 Glycosyltransferase Family 4 TPP_enzyme_M PF00205.22 AHV91464.1 - 0.084 12.6 0.1 3 7.6 0.0 2.2 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, central domain GTP_EFTU PF00009.27 AHV91465.1 - 5.5e-55 185.9 0.0 8.1e-55 185.4 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_C PF00679.24 AHV91465.1 - 6.9e-23 80.5 0.0 1.5e-22 79.5 0.0 1.5 1 0 0 1 1 1 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.25 AHV91465.1 - 1.8e-11 44.2 1.3 6.4e-11 42.5 1.5 1.9 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 AHV91465.1 - 2.6e-06 27.5 0.1 5.3e-06 26.5 0.1 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase EFG_II PF14492.6 AHV91465.1 - 0.0015 18.6 0.1 0.0032 17.5 0.1 1.5 1 0 0 1 1 1 1 Elongation Factor G, domain II FeoB_N PF02421.18 AHV91465.1 - 0.0018 17.9 0.1 0.029 13.9 0.0 2.8 3 1 0 3 3 3 1 Ferrous iron transport protein B Septin PF00735.18 AHV91465.1 - 0.0023 17.2 0.1 0.0037 16.6 0.1 1.2 1 0 0 1 1 1 1 Septin SRPRB PF09439.10 AHV91465.1 - 0.047 13.1 0.0 0.13 11.7 0.0 1.6 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit GFO_IDH_MocA PF01408.22 AHV91466.1 - 2e-29 102.8 0.1 2.9e-29 102.3 0.1 1.2 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 AHV91466.1 - 8.4e-21 74.2 0.1 1.4e-20 73.4 0.1 1.4 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain NAD_binding_3 PF03447.16 AHV91466.1 - 0.00061 20.4 0.1 0.001 19.7 0.1 1.4 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain F420_oxidored PF03807.17 AHV91466.1 - 0.0067 17.0 0.1 0.015 15.9 0.1 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent DapB_N PF01113.20 AHV91466.1 - 0.029 14.5 0.0 0.061 13.4 0.0 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Sacchrp_dh_NADP PF03435.18 AHV91466.1 - 0.057 13.7 0.1 0.4 10.9 0.0 2.4 3 0 0 3 3 3 0 Saccharopine dehydrogenase NADP binding domain AAA_28 PF13521.6 AHV91466.1 - 0.081 13.2 0.3 0.24 11.7 0.1 1.8 1 1 1 2 2 2 0 AAA domain DDE_Tnp_ISL3 PF01610.17 AHV91468.1 - 7.9e-65 218.9 1.2 1.1e-64 218.4 0.3 1.6 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV91468.1 - 1.4e-11 43.6 0.1 3.6e-11 42.3 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV91468.1 - 5.3e-09 36.6 11.2 1.1e-08 35.6 11.2 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV91468.1 - 0.0056 16.7 0.2 0.016 15.3 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain SLT_L PF14718.6 AHV91468.1 - 0.016 15.3 1.5 0.016 15.3 1.5 1.8 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain NOB1_Zn_bind PF08772.11 AHV91468.1 - 0.017 15.2 0.2 1.2 9.3 0.0 2.5 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-IS66 PF13005.7 AHV91468.1 - 8.2 6.9 9.6 3.6 8.1 6.6 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 HTH_Tnp_ISL3 PF13542.6 AHV91469.1 - 5.3e-12 45.0 0.1 1.3e-11 43.7 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV91469.1 - 2.4e-09 37.7 11.2 4.2e-09 36.9 11.2 1.4 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DDE_Tnp_ISL3 PF01610.17 AHV91469.1 - 5e-09 36.2 0.0 3e-08 33.7 0.0 1.9 2 0 0 2 2 2 1 Transposase NOB1_Zn_bind PF08772.11 AHV91469.1 - 0.0038 17.4 0.2 0.51 10.5 0.0 2.4 2 0 0 2 2 2 1 Nin one binding (NOB1) Zn-ribbon like NRho PF16733.5 AHV91469.1 - 0.006 16.6 0.0 0.023 14.8 0.0 1.9 2 0 0 2 2 2 1 Rhomboid N-terminal domain Zn-ribbon_8 PF09723.10 AHV91469.1 - 0.23 11.6 2.7 12 6.1 0.1 2.5 2 0 0 2 2 2 0 Zinc ribbon domain Nudix_N_2 PF14803.6 AHV91469.1 - 0.29 11.1 5.2 7.2 6.6 0.2 2.9 2 0 0 2 2 2 0 Nudix N-terminal zf-IS66 PF13005.7 AHV91469.1 - 0.31 11.5 6.2 1 9.8 6.2 1.9 1 0 0 1 1 1 0 zinc-finger binding domain of transposase IS66 SpoU_methylase PF00588.19 AHV91470.1 - 2.5e-34 118.5 0.0 3.3e-34 118.1 0.0 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family Phosphoesterase PF04185.14 AHV91471.1 - 3.4e-111 371.9 5.0 1.1e-110 370.2 5.0 1.7 1 1 0 1 1 1 1 Phosphoesterase family DUF756 PF05506.12 AHV91471.1 - 5.4e-52 174.6 3.8 2.1e-27 95.8 0.2 2.8 2 0 0 2 2 2 2 Domain of unknown function (DUF756) Hexapep PF00132.24 AHV91472.1 - 1.2e-08 34.3 0.0 1.5e-08 34.0 0.0 1.1 1 0 0 1 1 1 1 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 AHV91472.1 - 4.6e-07 29.5 0.0 5.5e-07 29.2 0.0 1.1 1 0 0 1 1 1 1 Hexapeptide repeat of succinyl-transferase DUF5335 PF17269.2 AHV91473.1 - 0.19 11.5 0.0 0.29 11.0 0.0 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5335) DDE_Tnp_ISL3 PF01610.17 AHV91474.1 - 7.9e-65 218.9 1.2 1.1e-64 218.4 0.3 1.6 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV91474.1 - 1.4e-11 43.6 0.1 3.6e-11 42.3 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV91474.1 - 5.3e-09 36.6 11.2 1.1e-08 35.6 11.2 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV91474.1 - 0.0056 16.7 0.2 0.016 15.3 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain SLT_L PF14718.6 AHV91474.1 - 0.016 15.3 1.5 0.016 15.3 1.5 1.8 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain NOB1_Zn_bind PF08772.11 AHV91474.1 - 0.017 15.2 0.2 1.2 9.3 0.0 2.5 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-IS66 PF13005.7 AHV91474.1 - 8.2 6.9 9.6 3.6 8.1 6.6 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 MFS_1 PF07690.16 AHV91475.1 - 9.6e-11 41.2 5.8 1.2e-10 40.9 5.8 1.1 1 0 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.24 AHV91475.1 - 0.027 13.3 0.5 0.032 13.1 0.5 1.2 1 0 0 1 1 1 0 Sugar (and other) transporter TRI12 PF06609.13 AHV91475.1 - 0.099 11.0 0.0 0.099 11.0 0.0 1.1 1 0 0 1 1 1 0 Fungal trichothecene efflux pump (TRI12) VIT1 PF01988.19 AHV91475.1 - 0.32 10.8 3.6 0.37 10.6 3.6 1.3 1 1 0 1 1 1 0 VIT family PEP_mutase PF13714.6 AHV91476.1 - 3.8e-52 177.1 2.4 4.4e-52 176.9 2.4 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate phosphomutase ICL PF00463.21 AHV91476.1 - 2.3e-10 39.6 0.6 3.1e-10 39.2 0.6 1.3 1 0 0 1 1 1 1 Isocitrate lyase family NanE PF04131.14 AHV91476.1 - 0.063 12.5 0.2 5.8 6.1 0.0 2.2 2 0 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase SecY PF00344.20 AHV91477.1 - 3.8e-118 394.2 18.3 6.1e-118 393.5 18.3 1.3 1 0 0 1 1 1 1 SecY translocase Cadherin_C_2 PF16492.5 AHV91477.1 - 0.085 13.6 0.2 13 6.7 0.1 2.7 2 0 0 2 2 2 0 Cadherin cytoplasmic C-terminal GTP_EFTU PF00009.27 AHV91478.1 - 3.5e-65 219.2 0.0 5.3e-65 218.6 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 AHV91478.1 - 1.1e-48 163.9 0.0 2.2e-48 163.0 0.0 1.5 1 0 0 1 1 1 1 Elongation factor G, domain IV EFG_II PF14492.6 AHV91478.1 - 8e-35 118.8 0.0 2.1e-34 117.4 0.0 1.8 1 0 0 1 1 1 1 Elongation Factor G, domain II EFG_C PF00679.24 AHV91478.1 - 3e-32 110.5 0.1 8.3e-32 109.1 0.1 1.8 1 0 0 1 1 1 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.25 AHV91478.1 - 2.9e-19 69.2 0.5 6.8e-19 68.0 0.5 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 2 RF3_C PF16658.5 AHV91478.1 - 6.3e-07 29.3 0.1 1.4e-06 28.2 0.1 1.5 1 0 0 1 1 1 1 Class II release factor RF3, C-terminal domain Slu7 PF11708.8 AHV91478.1 - 0.18 11.5 0.1 0.3 10.8 0.1 1.2 1 0 0 1 1 1 0 Pre-mRNA splicing Prp18-interacting factor AMP-binding PF00501.28 AHV91479.1 - 6.6e-25 87.6 0.0 8.4e-25 87.2 0.0 1.2 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 AHV91479.1 - 8.1e-21 74.8 0.2 1.5e-20 73.9 0.2 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ketoacyl-synt PF00109.26 AHV91480.1 - 4.6e-86 288.5 0.0 9.5e-86 287.5 0.0 1.6 1 0 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain Acyl_transf_1 PF00698.21 AHV91480.1 - 8e-46 157.0 0.3 1.3e-45 156.3 0.3 1.3 1 0 0 1 1 1 1 Acyl transferase domain Ketoacyl-synt_C PF02801.22 AHV91480.1 - 7.5e-41 138.9 0.2 1.1e-39 135.1 0.3 2.6 2 0 0 2 2 2 1 Beta-ketoacyl synthase, C-terminal domain KAsynt_C_assoc PF16197.5 AHV91480.1 - 3.4e-20 72.6 0.0 6.6e-20 71.6 0.0 1.4 1 0 0 1 1 1 1 Ketoacyl-synthetase C-terminal extension Thiolase_N PF00108.23 AHV91480.1 - 0.00011 21.7 0.0 0.0006 19.2 0.1 2.1 2 0 0 2 2 2 1 Thiolase, N-terminal domain ACP_syn_III PF08545.10 AHV91480.1 - 0.034 14.0 0.4 0.14 12.0 0.4 2.1 1 0 0 1 1 1 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III MAT1-1-2 PF17043.5 AHV91480.1 - 0.096 12.5 0.0 0.17 11.8 0.0 1.3 1 0 0 1 1 1 0 Mating type protein 1-1-2 of unknown function Glyco_transf_4 PF13439.6 AHV91481.1 - 4.5e-20 72.3 1.0 1e-19 71.2 1.0 1.6 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.20 AHV91481.1 - 3.3e-19 69.0 0.0 1.1e-18 67.4 0.0 1.7 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 AHV91481.1 - 3.4e-16 59.9 0.0 7.5e-16 58.8 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 AHV91481.1 - 3.9e-10 40.4 9.3 3.9e-10 40.4 9.3 2.7 2 2 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 AHV91481.1 - 0.003 17.9 0.0 0.0061 16.9 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 AHV91481.1 - 0.041 13.9 0.0 0.86 9.6 0.0 2.5 2 1 0 2 2 2 0 Glycosyl transferase 4-like rve_3 PF13683.6 AHV91482.1 - 1.8e-31 107.7 0.0 4.1e-31 106.6 0.0 1.6 2 0 0 2 2 2 1 Integrase core domain rve PF00665.26 AHV91482.1 - 5.6e-24 84.6 0.0 9.5e-24 83.9 0.0 1.3 1 0 0 1 1 1 1 Integrase core domain rve_2 PF13333.6 AHV91482.1 - 7e-07 29.3 0.0 1.2e-06 28.6 0.0 1.3 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AHV91482.1 - 0.00052 20.3 0.0 0.00079 19.7 0.0 1.4 1 0 0 1 1 1 1 DDE domain LysR_substrate PF03466.20 AHV91483.1 - 1.1e-17 64.1 3.8 1.8e-17 63.4 3.8 1.3 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 AHV91483.1 - 1.6e-17 63.2 0.6 1.6e-17 63.2 0.6 2.0 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family MarR_2 PF12802.7 AHV91483.1 - 0.0052 16.6 1.7 0.011 15.6 0.5 2.2 2 0 0 2 2 2 1 MarR family P22_Cro PF14549.6 AHV91483.1 - 0.011 15.6 0.0 0.031 14.1 0.0 1.8 1 0 0 1 1 1 0 DNA-binding transcriptional regulator Cro HTH_30 PF13556.6 AHV91483.1 - 0.014 15.1 0.4 0.04 13.7 0.4 1.8 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_AsnC-type PF13404.6 AHV91483.1 - 0.065 13.1 0.6 0.19 11.6 0.6 1.9 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain CMD PF02627.20 AHV91484.1 - 2e-21 75.8 0.2 3.3e-21 75.1 0.2 1.4 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family DehI PF10778.9 AHV91484.1 - 0.00018 21.6 0.0 0.00022 21.4 0.0 1.3 1 0 0 1 1 1 1 Halocarboxylic acid dehydrogenase DehI PA26 PF04636.13 AHV91484.1 - 0.00053 19.0 0.0 0.00055 19.0 0.0 1.1 1 0 0 1 1 1 1 PA26 p53-induced protein (sestrin) HTH_1 PF00126.27 AHV91485.1 - 1.1e-17 63.7 0.2 2e-17 62.9 0.2 1.4 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family LysR_substrate PF03466.20 AHV91485.1 - 7.7e-10 38.5 0.1 1.1e-09 38.0 0.1 1.2 1 0 0 1 1 1 1 LysR substrate binding domain POTRA_3 PF17287.2 AHV91485.1 - 0.0017 17.7 0.4 0.23 10.9 0.1 2.5 2 0 0 2 2 2 1 POTRA domain MarR_2 PF12802.7 AHV91485.1 - 0.0033 17.3 0.2 0.013 15.4 0.1 2.0 2 0 0 2 2 2 1 MarR family P22_Cro PF14549.6 AHV91485.1 - 0.0038 17.0 0.2 0.0094 15.8 0.1 1.6 2 0 0 2 2 2 1 DNA-binding transcriptional regulator Cro HTH_28 PF13518.6 AHV91485.1 - 0.007 16.5 0.0 0.014 15.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain SpoIIID PF12116.8 AHV91485.1 - 0.045 13.9 0.0 0.088 12.9 0.0 1.5 1 0 0 1 1 1 0 Stage III sporulation protein D HTH_23 PF13384.6 AHV91485.1 - 0.049 13.4 0.0 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain HTH_37 PF13744.6 AHV91485.1 - 0.052 13.5 0.0 0.1 12.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4 PF04545.16 AHV91485.1 - 0.079 12.5 0.2 0.22 11.1 0.0 1.8 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_17 PF12728.7 AHV91485.1 - 0.1 12.8 0.0 0.2 11.8 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain YdaS_antitoxin PF15943.5 AHV91485.1 - 0.2 11.5 0.5 0.42 10.5 0.0 1.7 2 0 0 2 2 2 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT Potass_KdpF PF09604.10 AHV91486.1 - 2.7e-11 43.2 0.9 3.6e-11 42.7 0.9 1.2 1 0 0 1 1 1 1 F subunit of K+-transporting ATPase (Potass_KdpF) MASE1 PF05231.14 AHV91486.1 - 0.024 13.8 0.5 0.027 13.6 0.5 1.0 1 0 0 1 1 1 0 MASE1 MarR PF01047.22 AHV91487.1 - 1.2e-12 47.5 0.0 1.8e-12 47.0 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 AHV91487.1 - 1.7e-12 47.0 0.5 3.5e-12 46.0 0.5 1.6 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 AHV91487.1 - 2e-11 44.2 0.0 7.4e-11 42.4 0.0 2.0 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_IclR PF09339.10 AHV91487.1 - 5.3e-05 22.9 0.3 5.3e-05 22.9 0.3 2.4 3 0 0 3 3 3 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.6 AHV91487.1 - 0.00036 20.5 0.0 0.00076 19.4 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain GntR PF00392.21 AHV91487.1 - 0.0034 17.0 1.7 0.0065 16.1 0.1 2.0 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_29 PF13551.6 AHV91487.1 - 0.009 16.0 0.1 0.019 15.0 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn helix PadR PF03551.14 AHV91487.1 - 0.047 13.7 0.0 0.073 13.0 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family TrmB PF01978.19 AHV91487.1 - 0.051 13.5 0.0 0.11 12.4 0.0 1.6 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_36 PF13730.6 AHV91487.1 - 0.057 13.4 0.0 0.14 12.1 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain HxlR PF01638.17 AHV91487.1 - 0.059 13.2 0.0 0.081 12.8 0.0 1.2 1 0 0 1 1 1 0 HxlR-like helix-turn-helix B-block_TFIIIC PF04182.12 AHV91487.1 - 0.095 12.9 0.0 0.12 12.5 0.0 1.2 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC Dimerisation2 PF16864.5 AHV91487.1 - 0.12 12.4 0.8 0.51 10.4 0.0 2.0 1 1 1 2 2 2 0 Dimerisation domain SLT PF01464.20 AHV91488.1 - 3.2e-20 71.9 0.0 6e-20 71.0 0.0 1.4 1 0 0 1 1 1 1 Transglycosylase SLT domain SLT_L PF14718.6 AHV91488.1 - 6.6e-07 29.4 1.2 6.6e-07 29.4 1.2 3.8 4 1 0 4 4 4 1 Soluble lytic murein transglycosylase L domain TPR_6 PF13174.6 AHV91488.1 - 8.8 7.2 6.1 4.2 8.2 0.6 3.1 3 0 0 3 3 3 0 Tetratricopeptide repeat Peptidase_M20 PF01546.28 AHV91490.1 - 4.3e-35 121.3 1.0 5.3e-35 121.0 1.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 AHV91490.1 - 1e-11 44.7 0.1 1e-11 44.7 0.1 1.7 2 0 0 2 2 2 1 Peptidase dimerisation domain CoA_transf_3 PF02515.17 AHV91491.1 - 1.9e-54 185.2 0.0 2.2e-54 185.0 0.0 1.0 1 0 0 1 1 1 1 CoA-transferase family III LEM PF03020.15 AHV91491.1 - 0.1 12.2 0.0 0.87 9.2 0.0 2.4 2 0 0 2 2 2 0 LEM domain DeoRC PF00455.22 AHV91492.1 - 2.3e-50 170.7 0.0 3.2e-50 170.2 0.0 1.1 1 0 0 1 1 1 1 DeoR C terminal sensor domain HTH_DeoR PF08220.12 AHV91492.1 - 1.4e-16 59.9 0.1 3e-16 58.9 0.1 1.6 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_11 PF08279.12 AHV91492.1 - 5e-07 29.6 0.1 1e-06 28.6 0.1 1.5 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.7 AHV91492.1 - 1.1e-05 25.4 1.1 3.7e-05 23.7 0.4 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain MarR PF01047.22 AHV91492.1 - 5.4e-05 23.0 0.1 0.00023 21.0 0.0 2.0 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.7 AHV91492.1 - 0.0004 20.2 0.3 0.0012 18.7 0.3 1.9 1 0 0 1 1 1 1 MarR family GntR PF00392.21 AHV91492.1 - 0.00063 19.3 0.1 0.0015 18.1 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_24 PF13412.6 AHV91492.1 - 0.0043 16.6 0.1 0.0098 15.4 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Sigma70_r4 PF04545.16 AHV91492.1 - 0.0045 16.5 0.1 0.011 15.2 0.1 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_AsnC-type PF13404.6 AHV91492.1 - 0.046 13.6 0.4 0.15 11.9 0.4 2.0 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_27 PF13463.6 AHV91492.1 - 0.048 14.2 0.0 0.1 13.1 0.0 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_IclR PF09339.10 AHV91492.1 - 0.058 13.2 0.6 0.14 12.0 0.6 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_7 PF02796.15 AHV91492.1 - 0.067 13.3 0.1 0.2 11.7 0.0 1.9 2 0 0 2 2 1 0 Helix-turn-helix domain of resolvase HTH_23 PF13384.6 AHV91492.1 - 0.077 12.8 0.6 1.2 9.0 0.0 3.0 3 0 0 3 3 3 0 Homeodomain-like domain FeoC PF09012.10 AHV91492.1 - 0.11 12.6 0.0 0.19 11.8 0.0 1.4 1 0 0 1 1 1 0 FeoC like transcriptional regulator CoA_trans PF01144.23 AHV91492.1 - 0.11 11.9 0.1 0.15 11.4 0.1 1.3 1 0 0 1 1 1 0 Coenzyme A transferase Rrf2 PF02082.20 AHV91492.1 - 0.11 12.8 0.0 0.29 11.5 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator Put_DNA-bind_N PF06971.13 AHV91492.1 - 0.12 12.4 0.1 0.24 11.5 0.1 1.5 1 0 0 1 1 1 0 Putative DNA-binding protein N-terminus HTH_Crp_2 PF13545.6 AHV91492.1 - 0.17 11.9 4.5 0.31 11.1 0.2 3.0 3 0 0 3 3 3 0 Crp-like helix-turn-helix domain HTH_38 PF13936.6 AHV91492.1 - 0.28 11.0 3.9 15 5.5 0.0 3.2 3 0 0 3 3 3 0 Helix-turn-helix domain Aconitase PF00330.20 AHV91493.1 - 1.2e-39 136.7 0.0 1.7e-37 129.5 0.0 2.1 1 1 0 1 1 1 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.19 AHV91493.1 - 4.7e-08 33.4 0.0 7.3e-08 32.8 0.0 1.2 1 0 0 1 1 1 1 Aconitase C-terminal domain TFIID_30kDa PF03540.13 AHV91493.1 - 0.042 13.8 0.0 0.094 12.7 0.0 1.6 1 0 0 1 1 1 0 Transcription initiation factor TFIID 23-30kDa subunit DUF2635 PF10948.8 AHV91493.1 - 0.1 12.3 0.0 1.9 8.3 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2635) MoCF_biosynth PF00994.24 AHV91494.1 - 3.3e-33 114.4 0.0 3.9e-33 114.1 0.0 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain Plug PF07715.15 AHV91495.1 - 3.1e-14 53.4 3.2 5.3e-14 52.7 3.2 1.4 1 0 0 1 1 1 1 TonB-dependent Receptor Plug Domain STN PF07660.14 AHV91495.1 - 3.4e-09 36.4 0.0 8.5e-09 35.1 0.0 1.8 1 0 0 1 1 1 1 Secretin and TonB N terminus short domain PSCyt2 PF07583.11 AHV91495.1 - 0.032 14.1 0.1 0.055 13.4 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1549) DNA_binding_1 PF01035.20 AHV91496.1 - 8.8e-27 93.1 0.0 1.2e-26 92.6 0.0 1.2 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain Methyltransf_1N PF02870.15 AHV91496.1 - 0.00018 22.3 0.0 0.00027 21.7 0.0 1.2 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain DUF2587 PF10759.9 AHV91496.1 - 0.089 12.3 0.1 0.11 12.0 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2587) LysR_substrate PF03466.20 AHV91497.1 - 1.2e-40 139.2 1.6 2e-40 138.4 1.6 1.3 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 AHV91497.1 - 2.4e-20 72.2 1.9 5.1e-20 71.2 1.9 1.6 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family MarR_2 PF12802.7 AHV91497.1 - 0.0021 17.9 0.4 0.0072 16.2 0.4 2.0 1 0 0 1 1 1 1 MarR family HTH_28 PF13518.6 AHV91497.1 - 0.034 14.3 0.1 0.072 13.2 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain PBP_like_2 PF12849.7 AHV91497.1 - 0.23 11.1 0.0 0.32 10.6 0.0 1.2 1 0 0 1 1 1 0 PBP superfamily domain CoA_transf_3 PF02515.17 AHV91498.1 - 2.5e-111 372.4 0.0 2.8e-111 372.2 0.0 1.0 1 0 0 1 1 1 1 CoA-transferase family III 2-Hacid_dh_C PF02826.19 AHV91499.1 - 5.3e-44 149.7 0.0 6.6e-44 149.4 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 AHV91499.1 - 5.5e-06 26.6 0.0 9.1e-06 25.9 0.0 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.18 AHV91499.1 - 0.013 15.4 0.3 0.048 13.5 0.1 1.9 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ICL PF00463.21 AHV91500.1 - 2.4e-103 346.4 0.4 1.2e-55 189.0 0.0 2.0 1 1 1 2 2 2 2 Isocitrate lyase family PEP_mutase PF13714.6 AHV91500.1 - 4.7e-18 65.5 0.0 1.3e-17 64.0 0.0 1.5 1 1 0 1 1 1 1 Phosphoenolpyruvate phosphomutase NADHdh PF00146.21 AHV91501.1 - 3.7e-124 413.9 25.6 4.3e-124 413.7 25.6 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Helicase_C PF00271.31 AHV91502.1 - 7.1e-21 74.6 0.0 2.4e-17 63.3 0.0 2.3 2 0 0 2 2 2 2 Helicase conserved C-terminal domain RecG_wedge PF17191.4 AHV91502.1 - 3.6e-16 59.2 0.0 5.2e-16 58.7 0.0 1.2 1 0 0 1 1 1 1 RecG wedge domain DEAD PF00270.29 AHV91502.1 - 5.4e-16 58.8 0.0 2.6e-15 56.6 0.0 1.9 2 0 0 2 2 2 1 DEAD/DEAH box helicase ResIII PF04851.15 AHV91502.1 - 4e-09 36.7 0.0 9.7e-09 35.5 0.0 1.6 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit tRNA_anti-codon PF01336.25 AHV91502.1 - 0.00011 22.1 0.0 0.00024 21.0 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain AAA_30 PF13604.6 AHV91502.1 - 0.0015 18.3 4.0 0.0017 18.1 1.3 2.6 2 1 0 2 2 2 1 AAA domain SecA_DEAD PF07517.14 AHV91502.1 - 0.0041 16.4 0.0 0.0063 15.8 0.0 1.3 1 0 0 1 1 1 1 SecA DEAD-like domain Helicase_RecD PF05127.14 AHV91502.1 - 0.016 15.1 0.1 0.04 13.8 0.1 1.7 1 0 0 1 1 1 0 Helicase IstB_IS21 PF01695.17 AHV91502.1 - 0.049 13.4 0.0 0.099 12.4 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_16 PF13191.6 AHV91502.1 - 0.058 13.8 3.8 2 8.8 0.0 3.4 2 1 0 3 3 3 0 AAA ATPase domain TsaE PF02367.17 AHV91502.1 - 0.17 11.9 0.0 0.41 10.6 0.0 1.6 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE TIP49 PF06068.13 AHV91502.1 - 0.23 10.6 0.0 0.35 10.0 0.0 1.2 1 0 0 1 1 1 0 TIP49 P-loop domain MTS PF05175.14 AHV91503.1 - 3.1e-12 46.4 0.0 4.4e-12 45.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 AHV91503.1 - 1.7e-09 37.5 0.0 2.3e-09 37.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.6 AHV91503.1 - 1.5e-07 32.0 0.0 3.1e-07 31.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 AHV91503.1 - 2.7e-07 30.5 0.0 5.1e-07 29.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 AHV91503.1 - 2.3e-05 24.9 0.0 4.5e-05 24.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.18 AHV91503.1 - 2.8e-05 23.9 0.0 4.5e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_18 PF12847.7 AHV91503.1 - 0.00017 21.6 0.0 0.00035 20.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 AHV91503.1 - 0.0012 19.6 0.0 0.0022 18.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 AHV91503.1 - 0.011 15.5 0.0 0.033 14.0 0.0 1.7 2 0 0 2 2 2 0 Methyltransferase domain PCMT PF01135.19 AHV91503.1 - 0.015 15.1 0.0 0.027 14.2 0.0 1.4 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) AviRa PF11599.8 AHV91503.1 - 0.016 14.7 0.0 0.031 13.7 0.0 1.4 1 0 0 1 1 1 0 RRNA methyltransferase AviRa Methyltransf_32 PF13679.6 AHV91503.1 - 0.018 15.0 0.0 0.034 14.1 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Cons_hypoth95 PF03602.15 AHV91503.1 - 0.05 13.2 0.0 0.067 12.8 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 RrnaAD PF00398.20 AHV91503.1 - 0.055 12.5 0.0 0.082 12.0 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase TrmK PF04816.12 AHV91503.1 - 0.25 10.9 0.0 0.41 10.2 0.0 1.3 1 0 0 1 1 1 0 tRNA (adenine(22)-N(1))-methyltransferase FAD-oxidase_C PF02913.19 AHV91504.1 - 1.8e-24 86.7 2.4 1.7e-17 63.9 0.5 2.3 2 0 0 2 2 2 2 FAD linked oxidases, C-terminal domain DUF3400 PF11880.8 AHV91504.1 - 4.4e-24 83.7 0.4 9.3e-24 82.7 0.4 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF3400) FAD_binding_4 PF01565.23 AHV91504.1 - 2.3e-14 53.3 0.1 1e-13 51.2 0.4 2.0 2 0 0 2 2 2 1 FAD binding domain CCG PF02754.16 AHV91504.1 - 4.7e-14 52.4 0.3 2.7e-07 30.7 0.0 3.0 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.6 AHV91504.1 - 4e-07 30.4 3.7 4e-07 30.4 3.7 2.1 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 AHV91504.1 - 1.1e-05 25.9 6.2 0.00023 21.6 7.1 2.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 AHV91504.1 - 2.2e-05 24.9 4.5 6.8e-05 23.4 4.5 1.9 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.6 AHV91504.1 - 0.0007 19.8 4.7 0.4 10.9 0.1 3.2 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 AHV91504.1 - 0.0068 16.5 0.5 0.0068 16.5 0.5 3.0 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 AHV91504.1 - 0.084 13.0 16.3 0.13 12.4 1.5 3.0 3 1 1 4 4 3 0 4Fe-4S dicluster domain Fer4_9 PF13187.6 AHV91504.1 - 0.45 10.7 16.1 0.087 13.0 9.5 2.9 3 1 1 4 4 3 0 4Fe-4S dicluster domain SLT_L PF14718.6 AHV91504.1 - 1.4 9.1 8.8 1.3 9.3 1.8 2.5 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain Fer4 PF00037.27 AHV91504.1 - 8 6.5 20.9 1.3 8.9 3.8 3.4 3 0 0 3 3 3 0 4Fe-4S binding domain FAD_binding_3 PF01494.19 AHV91505.1 - 2.2e-16 60.1 0.0 2.3e-16 60.0 0.0 1.1 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.24 AHV91505.1 - 2.7e-08 33.8 0.5 4.2e-08 33.2 0.5 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 AHV91505.1 - 1.3e-05 25.3 0.2 2.9e-05 24.2 0.2 1.8 1 1 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 AHV91505.1 - 1.9e-05 24.1 0.0 2.1e-05 23.9 0.0 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 AHV91505.1 - 2.2e-05 23.8 0.1 2.9e-05 23.4 0.1 1.1 1 0 0 1 1 1 1 Thi4 family FAD_binding_2 PF00890.24 AHV91505.1 - 2.7e-05 23.5 0.0 3.3e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.14 AHV91505.1 - 0.00013 20.8 0.0 0.00017 20.4 0.0 1.1 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox_3 PF13738.6 AHV91505.1 - 0.0002 20.7 0.0 0.00026 20.3 0.0 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.14 AHV91505.1 - 0.00028 20.5 0.1 0.00038 20.1 0.1 1.1 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_7 PF13241.6 AHV91505.1 - 0.0014 19.0 0.0 0.0017 18.7 0.0 1.2 1 0 0 1 1 1 1 Putative NAD(P)-binding Lycopene_cycl PF05834.12 AHV91505.1 - 0.0014 17.7 0.1 0.0016 17.5 0.1 1.1 1 0 0 1 1 1 1 Lycopene cyclase protein ThiF PF00899.21 AHV91505.1 - 0.0019 17.6 0.1 0.0025 17.2 0.1 1.1 1 0 0 1 1 1 1 ThiF family Pyr_redox PF00070.27 AHV91505.1 - 0.002 18.6 0.0 0.0036 17.8 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 AHV91505.1 - 0.0065 15.6 0.0 0.008 15.3 0.0 1.1 1 0 0 1 1 1 1 Glucose inhibited division protein A FAD_oxidored PF12831.7 AHV91505.1 - 0.011 15.1 0.1 0.015 14.7 0.1 1.2 1 0 0 1 1 1 0 FAD dependent oxidoreductase 3HCDH_N PF02737.18 AHV91505.1 - 0.019 14.8 0.0 0.026 14.4 0.0 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.18 AHV91505.1 - 0.022 15.0 0.0 0.028 14.7 0.0 1.2 1 0 0 1 1 1 0 TrkA-N domain AlaDh_PNT_C PF01262.21 AHV91505.1 - 0.028 13.7 0.2 0.031 13.6 0.2 1.1 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Glu_dehyd_C PF16912.5 AHV91505.1 - 0.04 13.4 0.0 0.052 13.0 0.0 1.1 1 0 0 1 1 1 0 Glucose dehydrogenase C-terminus NAD_binding_9 PF13454.6 AHV91505.1 - 0.06 13.3 0.1 0.091 12.7 0.1 1.3 1 0 0 1 1 1 0 FAD-NAD(P)-binding Shikimate_DH PF01488.20 AHV91505.1 - 0.061 13.4 0.0 0.087 12.9 0.0 1.2 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Hemopexin PF00045.19 AHV91505.1 - 0.096 12.6 0.4 0.2 11.6 0.4 1.5 1 0 0 1 1 1 0 Hemopexin 2-Hacid_dh_C PF02826.19 AHV91505.1 - 0.1 12.0 0.0 0.13 11.6 0.0 1.1 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain zf-dskA_traR PF01258.17 AHV91506.1 - 6.9e-11 41.9 0.1 1.2e-10 41.1 0.1 1.4 1 0 0 1 1 1 1 Prokaryotic dksA/traR C4-type zinc finger Pirin PF02678.16 AHV91507.1 - 1.8e-33 114.8 0.0 3.3e-33 113.9 0.0 1.5 1 0 0 1 1 1 1 Pirin Pirin_C PF05726.13 AHV91507.1 - 1e-25 90.1 0.0 3.6e-25 88.3 0.0 1.9 2 0 0 2 2 2 1 Pirin C-terminal cupin domain Metallophos_2 PF12850.7 AHV91508.1 - 2.7e-12 47.2 1.7 2.7e-11 43.9 1.7 2.0 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 AHV91508.1 - 1.6e-11 45.1 7.3 2.5e-11 44.4 7.3 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase HAD PF12710.7 AHV91508.1 - 0.064 13.7 0.4 0.3 11.5 0.1 2.0 1 1 1 2 2 2 0 haloacid dehalogenase-like hydrolase GST_N_3 PF13417.6 AHV91509.1 - 1.8e-11 44.3 0.0 4e-11 43.2 0.0 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N PF02798.20 AHV91509.1 - 2.5e-10 40.5 0.0 7.6e-10 39.0 0.0 1.8 2 0 0 2 2 2 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.6 AHV91509.1 - 8.4e-09 35.6 0.0 1.6e-08 34.7 0.0 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_C_2 PF13410.6 AHV91509.1 - 4e-06 26.7 0.8 8.5e-06 25.7 0.8 1.6 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C_3 PF14497.6 AHV91509.1 - 0.0008 19.6 0.0 0.0014 18.8 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C PF00043.25 AHV91509.1 - 0.015 15.5 0.0 0.022 15.0 0.0 1.3 1 0 0 1 1 1 0 Glutathione S-transferase, C-terminal domain GST_N_4 PF17172.4 AHV91509.1 - 0.15 12.9 0.0 0.25 12.1 0.0 1.3 1 0 0 1 1 1 0 Glutathione S-transferase N-terminal domain Lipoprotein_20 PF13942.6 AHV91510.1 - 0.0063 16.4 0.3 0.0073 16.2 0.3 1.0 1 0 0 1 1 1 1 YfhG lipoprotein DUF641 PF04859.12 AHV91510.1 - 0.051 13.9 1.2 4.9 7.5 0.1 2.0 1 1 1 2 2 2 0 Plant protein of unknown function (DUF641) DivIC PF04977.15 AHV91510.1 - 0.055 13.2 2.0 0.07 12.9 2.0 1.2 1 0 0 1 1 1 0 Septum formation initiator CwsA PF10814.8 AHV91510.1 - 0.057 13.6 1.5 0.065 13.4 1.5 1.1 1 0 0 1 1 1 0 Cell wall synthesis protein CwsA Flagellin_D3 PF08884.11 AHV91510.1 - 0.07 13.5 0.0 0.086 13.2 0.0 1.2 1 0 0 1 1 1 0 Flagellin D3 domain DUF4140 PF13600.6 AHV91510.1 - 0.71 10.4 5.9 2.4 8.6 5.9 1.7 1 1 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) LysR_substrate PF03466.20 AHV91511.1 - 4.2e-22 78.6 0.5 4.2e-22 78.6 0.5 1.5 2 0 0 2 2 2 1 LysR substrate binding domain HTH_1 PF00126.27 AHV91511.1 - 3.1e-17 62.3 0.2 7.5e-17 61.0 0.2 1.6 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_20 PF12840.7 AHV91511.1 - 0.0022 18.0 0.1 0.0022 18.0 0.1 2.3 4 0 0 4 4 4 1 Helix-turn-helix domain HTH_5 PF01022.20 AHV91511.1 - 0.0036 17.1 0.0 0.0072 16.2 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 AHV91511.1 - 0.0061 16.1 0.1 0.011 15.3 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_28 PF13518.6 AHV91511.1 - 0.013 15.6 0.1 0.031 14.4 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_10 PF04967.12 AHV91511.1 - 0.032 14.0 0.0 0.07 12.9 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain HTH_AsnC-type PF13404.6 AHV91511.1 - 0.039 13.8 0.1 0.12 12.3 0.1 1.9 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Cupredoxin_1 PF13473.6 AHV91512.1 - 1.9e-23 82.6 0.0 2e-23 82.5 0.0 1.0 1 0 0 1 1 1 1 Cupredoxin-like domain EarP PF10093.9 AHV91513.1 - 2.9e-68 230.7 0.0 3.2e-68 230.5 0.0 1.0 1 0 0 1 1 1 1 Elongation-Factor P (EF-P) rhamnosyltransferase EarP DDE_Tnp_ISL3 PF01610.17 AHV91514.1 - 7.9e-65 218.9 1.2 1.1e-64 218.4 0.3 1.6 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV91514.1 - 1.4e-11 43.6 0.1 3.6e-11 42.3 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV91514.1 - 5.3e-09 36.6 11.2 1.1e-08 35.6 11.2 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV91514.1 - 0.0056 16.7 0.2 0.016 15.3 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain SLT_L PF14718.6 AHV91514.1 - 0.016 15.3 1.5 0.016 15.3 1.5 1.8 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain NOB1_Zn_bind PF08772.11 AHV91514.1 - 0.017 15.2 0.2 1.2 9.3 0.0 2.5 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-IS66 PF13005.7 AHV91514.1 - 8.2 6.9 9.6 3.6 8.1 6.6 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 MttA_Hcf106 PF02416.16 AHV91515.1 - 4e-13 48.5 0.0 4.4e-13 48.3 0.0 1.1 1 0 0 1 1 1 1 mttA/Hcf106 family Ni_hydr_CYTB PF01292.20 AHV91515.1 - 0.041 13.5 0.0 0.041 13.5 0.0 1.1 1 0 0 1 1 1 0 Prokaryotic cytochrome b561 AstE_AspA PF04952.14 AHV91516.1 - 2.2e-13 49.9 0.0 2.4e-11 43.2 0.0 2.2 2 0 0 2 2 2 2 Succinylglutamate desuccinylase / Aspartoacylase family LON_substr_bdg PF02190.16 AHV91518.1 - 5.5e-15 55.8 0.0 3.4e-14 53.2 0.0 1.8 1 1 0 1 1 1 1 ATP-dependent protease La (LON) substrate-binding domain Glycos_transf_1 PF00534.20 AHV91519.1 - 1.2e-23 83.5 0.0 2.3e-23 82.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 AHV91519.1 - 2.4e-19 70.1 0.2 6.2e-19 68.8 0.2 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 AHV91519.1 - 1.6e-12 47.7 2.5 4.4e-12 46.3 0.5 2.4 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 AHV91519.1 - 8e-07 29.6 3.5 8e-07 29.6 3.5 3.3 2 1 1 3 3 3 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 AHV91519.1 - 0.00011 22.5 0.0 0.00035 20.9 0.0 1.9 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 AHV91519.1 - 0.0002 21.4 0.0 0.0026 17.8 0.0 2.3 1 1 0 1 1 1 1 Glycosyl transferase 4-like PseudoU_synth_1 PF01416.20 AHV91519.1 - 0.045 14.2 0.0 0.12 12.8 0.0 1.7 1 0 0 1 1 1 0 tRNA pseudouridine synthase adh_short_C2 PF13561.6 AHV91520.1 - 1.1e-14 54.6 0.0 1.2e-14 54.5 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase BPD_transp_1 PF00528.22 AHV91521.1 - 1.3e-26 93.5 12.2 1.3e-26 93.5 12.2 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 AHV91521.1 - 1.5e-09 37.7 1.5 1.5e-09 37.7 1.5 3.7 4 0 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C SQS_PSY PF00494.19 AHV91522.1 - 6.6e-84 281.5 3.5 7.7e-84 281.3 3.5 1.0 1 0 0 1 1 1 1 Squalene/phytoene synthase Peripla_BP_2 PF01497.18 AHV91523.1 - 1.4e-29 103.4 0.0 2e-29 102.9 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein MCPsignal PF00015.21 AHV91523.1 - 0.051 13.4 0.3 0.1 12.4 0.3 1.5 1 0 0 1 1 1 0 Methyl-accepting chemotaxis protein (MCP) signalling domain DDE_Tnp_ISL3 PF01610.17 AHV91524.1 - 7.9e-65 218.9 1.2 1.1e-64 218.4 0.3 1.6 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV91524.1 - 1.4e-11 43.6 0.1 3.6e-11 42.3 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV91524.1 - 5.3e-09 36.6 11.2 1.1e-08 35.6 11.2 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV91524.1 - 0.0056 16.7 0.2 0.016 15.3 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain SLT_L PF14718.6 AHV91524.1 - 0.016 15.3 1.5 0.016 15.3 1.5 1.8 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain NOB1_Zn_bind PF08772.11 AHV91524.1 - 0.017 15.2 0.2 1.2 9.3 0.0 2.5 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-IS66 PF13005.7 AHV91524.1 - 8.2 6.9 9.6 3.6 8.1 6.6 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 STN PF07660.14 AHV91525.1 - 7.4e-15 54.5 0.0 2.3e-14 52.9 0.0 1.7 2 0 0 2 2 2 1 Secretin and TonB N terminus short domain CoA_transf_3 PF02515.17 AHV91526.1 - 3.4e-80 269.9 0.1 3.6e-79 266.6 0.1 1.9 1 1 0 1 1 1 1 CoA-transferase family III Amidase PF01425.21 AHV91527.1 - 6.4e-88 295.7 0.8 7.8e-88 295.4 0.8 1.1 1 0 0 1 1 1 1 Amidase GTP1_OBG PF01018.22 AHV91528.1 - 2.9e-58 195.9 3.9 4e-58 195.4 3.9 1.2 1 0 0 1 1 1 1 GTP1/OBG MMR_HSR1 PF01926.23 AHV91528.1 - 7.3e-25 87.3 0.0 1.1e-24 86.7 0.0 1.3 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 AHV91528.1 - 9.5e-08 31.7 0.0 2.2e-07 30.5 0.0 1.6 2 0 0 2 2 2 1 Ferrous iron transport protein B MeaB PF03308.16 AHV91528.1 - 9.9e-05 21.4 0.0 0.35 9.8 0.0 2.2 2 0 0 2 2 2 2 Methylmalonyl Co-A mutase-associated GTPase MeaB Gtr1_RagA PF04670.12 AHV91528.1 - 0.04 13.3 0.0 0.06 12.7 0.0 1.2 1 0 0 1 1 1 0 Gtr1/RagA G protein conserved region GTP_EFTU PF00009.27 AHV91528.1 - 0.058 12.9 0.0 7.9 6.0 0.0 2.4 2 1 0 2 2 2 0 Elongation factor Tu GTP binding domain RsgA_GTPase PF03193.16 AHV91528.1 - 0.065 13.1 0.0 4.7 7.1 0.0 2.6 2 1 0 2 2 2 0 RsgA GTPase ABC_tran PF00005.27 AHV91528.1 - 0.074 13.6 0.0 1.3 9.5 0.0 2.2 2 0 0 2 2 2 0 ABC transporter Arf PF00025.21 AHV91528.1 - 0.084 12.3 0.0 0.15 11.5 0.0 1.5 1 1 0 1 1 1 0 ADP-ribosylation factor family HyaE PF07449.11 AHV91531.1 - 0.0016 18.4 0.0 0.0019 18.1 0.0 1.4 1 1 0 1 1 1 1 Hydrogenase-1 expression protein HyaE Thioredoxin PF00085.20 AHV91531.1 - 0.0028 17.6 0.0 0.0044 17.0 0.0 1.3 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 AHV91531.1 - 0.035 14.6 0.0 1.2 9.6 0.1 2.1 1 1 0 2 2 2 0 Thioredoxin-like domain Glutaredoxin PF00462.24 AHV91531.1 - 0.12 12.6 0.0 0.18 12.0 0.0 1.4 1 0 0 1 1 1 0 Glutaredoxin DUF692 PF05114.13 AHV91532.1 - 3.6e-36 124.7 0.2 4e-36 124.6 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF692) Aminotran_1_2 PF00155.21 AHV91534.1 - 6e-32 111.2 0.0 8.4e-32 110.7 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II GntR PF00392.21 AHV91534.1 - 4.3e-10 39.1 0.1 1.3e-09 37.6 0.1 1.9 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_28 PF13518.6 AHV91534.1 - 0.00084 19.4 0.2 0.012 15.8 0.1 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 AHV91534.1 - 0.0078 16.1 0.0 0.03 14.2 0.0 2.0 1 0 0 1 1 1 1 MarR family Aminotran_MocR PF12897.7 AHV91534.1 - 0.01 14.7 0.0 0.013 14.4 0.0 1.1 1 0 0 1 1 1 0 Alanine-glyoxylate amino-transferase HTH_AsnC-type PF13404.6 AHV91534.1 - 0.022 14.6 0.1 5.6 6.9 0.0 2.7 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain Aminotran_5 PF00266.19 AHV91534.1 - 0.037 13.0 0.0 0.057 12.4 0.0 1.3 1 0 0 1 1 1 0 Aminotransferase class-V HTH_36 PF13730.6 AHV91534.1 - 0.097 12.6 0.0 0.18 11.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain OKR_DC_1 PF01276.20 AHV91534.1 - 0.16 10.7 0.0 0.25 10.0 0.0 1.3 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain His_biosynth PF00977.21 AHV91535.1 - 4.5e-76 255.3 0.1 5e-76 255.1 0.1 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.17 AHV91535.1 - 1e-07 31.4 0.1 0.0025 17.0 0.1 2.2 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NMO PF03060.15 AHV91535.1 - 0.0016 17.9 2.9 0.36 10.2 0.4 2.1 2 0 0 2 2 2 2 Nitronate monooxygenase TMP-TENI PF02581.17 AHV91535.1 - 0.019 14.3 0.1 0.83 9.0 0.0 2.3 2 0 0 2 2 2 0 Thiamine monophosphate synthase DHO_dh PF01180.21 AHV91535.1 - 0.051 12.8 0.3 0.63 9.2 0.1 2.0 2 0 0 2 2 2 0 Dihydroorotate dehydrogenase Indigoidine_A PF04227.12 AHV91535.1 - 0.11 11.8 0.0 0.16 11.3 0.0 1.1 1 0 0 1 1 1 0 Indigoidine synthase A like protein Trp_syntA PF00290.20 AHV91535.1 - 0.15 10.9 0.0 0.27 10.0 0.0 1.4 1 0 0 1 1 1 0 Tryptophan synthase alpha chain FMN_dh PF01070.18 AHV91535.1 - 0.3 10.1 1.6 5.5 5.9 0.1 2.1 2 0 0 2 2 2 0 FMN-dependent dehydrogenase IMPDH PF00478.25 AHV91535.1 - 0.66 8.9 2.2 3.2 6.7 0.4 2.0 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain SBP_bac_1 PF01547.25 AHV91536.1 - 2.6e-10 40.8 1.3 3.3e-10 40.4 1.3 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 AHV91536.1 - 1.3e-07 31.3 0.1 1.5e-07 31.1 0.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 AHV91536.1 - 2.7e-06 27.4 0.1 3.4e-06 27.1 0.1 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 AHV91536.1 - 0.0076 16.0 0.3 0.026 14.2 0.3 1.9 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein Ribosomal_L14 PF00238.19 AHV91537.1 - 1.6e-53 179.9 0.5 1.8e-53 179.8 0.5 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e DUF5036 PF16439.5 AHV91537.1 - 0.11 12.2 0.1 0.13 11.9 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF5036) DDE_Tnp_ISL3 PF01610.17 AHV91538.1 - 7.9e-65 218.9 1.2 1.1e-64 218.4 0.3 1.6 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV91538.1 - 1.4e-11 43.6 0.1 3.6e-11 42.3 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV91538.1 - 5.3e-09 36.6 11.2 1.1e-08 35.6 11.2 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV91538.1 - 0.0056 16.7 0.2 0.016 15.3 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain SLT_L PF14718.6 AHV91538.1 - 0.016 15.3 1.5 0.016 15.3 1.5 1.8 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain NOB1_Zn_bind PF08772.11 AHV91538.1 - 0.017 15.2 0.2 1.2 9.3 0.0 2.5 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-IS66 PF13005.7 AHV91538.1 - 8.2 6.9 9.6 3.6 8.1 6.6 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 YbaB_DNA_bd PF02575.16 AHV91540.1 - 1.5e-34 118.0 4.8 1.8e-34 117.8 4.8 1.0 1 0 0 1 1 1 1 YbaB/EbfC DNA-binding family acVLRF1 PF18859.1 AHV91540.1 - 0.37 11.1 1.9 0.49 10.7 1.9 1.2 1 0 0 1 1 1 0 Actinobacteria/chloroflexi VLRF1 release factor DDE_Tnp_ISL3 PF01610.17 AHV91541.1 - 8.3e-65 218.9 1.2 1.2e-64 218.4 0.3 1.6 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV91541.1 - 1.5e-11 43.5 0.1 3.6e-11 42.3 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV91541.1 - 5.1e-09 36.7 11.2 1.2e-08 35.5 11.2 1.7 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV91541.1 - 0.0057 16.7 0.2 0.016 15.2 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain SLT_L PF14718.6 AHV91541.1 - 0.016 15.3 1.5 0.016 15.3 1.5 1.8 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain NOB1_Zn_bind PF08772.11 AHV91541.1 - 0.018 15.2 0.2 1.3 9.3 0.0 2.5 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-IS66 PF13005.7 AHV91541.1 - 8.5 6.9 9.6 3.7 8.0 6.6 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Peptidase_M20 PF01546.28 AHV91542.1 - 2e-38 132.2 0.0 2e-37 128.9 0.0 2.2 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 AHV91542.1 - 9.3e-14 51.3 0.3 6.1e-13 48.6 0.0 2.2 2 0 0 2 2 2 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 AHV91542.1 - 0.00031 20.5 0.0 0.00054 19.7 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M28 LysR_substrate PF03466.20 AHV91543.1 - 4.8e-31 107.8 5.8 6.6e-31 107.3 5.8 1.2 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 AHV91543.1 - 2.2e-17 62.7 0.9 5.5e-17 61.5 0.9 1.7 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_28 PF13518.6 AHV91543.1 - 0.0011 19.0 0.0 0.0023 18.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 AHV91543.1 - 0.013 15.0 0.7 0.022 14.3 0.1 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding TrmB PF01978.19 AHV91543.1 - 0.014 15.3 0.1 0.029 14.3 0.1 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.6 AHV91543.1 - 0.021 14.6 0.0 0.046 13.5 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain MarR_2 PF12802.7 AHV91543.1 - 0.047 13.6 0.5 0.18 11.7 0.2 2.1 2 0 0 2 2 2 0 MarR family MarR PF01047.22 AHV91543.1 - 0.069 13.1 0.1 0.19 11.7 0.1 1.7 1 0 0 1 1 1 0 MarR family HTH_50 PF18024.1 AHV91543.1 - 0.15 11.7 0.0 0.38 10.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain FtsL PF04999.13 AHV91544.1 - 1.4e-18 66.6 0.2 1.6e-18 66.5 0.2 1.0 1 0 0 1 1 1 1 Cell division protein FtsL DivIC PF04977.15 AHV91544.1 - 0.0022 17.8 0.2 0.0026 17.5 0.2 1.1 1 0 0 1 1 1 1 Septum formation initiator EPSP_synthase PF00275.20 AHV91545.1 - 4e-31 108.2 0.0 4.3e-31 108.0 0.0 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LZ_Tnp_IS481 PF13011.6 AHV91546.1 - 2.3e-22 79.3 2.6 4.6e-20 71.9 0.4 2.3 1 1 1 2 2 2 1 leucine-zipper of insertion element IS481 HTH_23 PF13384.6 AHV91546.1 - 2.6e-17 62.1 4.4 6.1e-08 32.2 0.1 2.3 2 0 0 2 2 2 2 Homeodomain-like domain HTH_28 PF13518.6 AHV91546.1 - 1.3e-16 60.4 2.6 2.9e-11 43.3 0.1 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_29 PF13551.6 AHV91546.1 - 3.9e-12 46.0 0.6 1.3e-06 28.3 0.0 2.3 2 0 0 2 2 2 2 Winged helix-turn helix HTH_32 PF13565.6 AHV91546.1 - 2.3e-11 44.1 0.7 4.3e-11 43.3 0.7 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_38 PF13936.6 AHV91546.1 - 2.1e-06 27.4 1.8 4.5e-06 26.3 1.1 1.9 2 1 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 AHV91546.1 - 4.2e-06 26.5 3.4 5e-05 23.1 1.2 2.3 2 0 0 2 2 2 1 MarR family HTH_Tnp_ISL3 PF13542.6 AHV91546.1 - 5.9e-06 25.6 1.9 0.0011 18.4 0.6 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 Sigma70_r4_2 PF08281.12 AHV91546.1 - 1.2e-05 24.9 0.1 0.0035 17.0 0.3 2.3 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 AHV91546.1 - 2.3e-05 23.8 0.1 0.00031 20.2 0.2 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 YdaS_antitoxin PF15943.5 AHV91546.1 - 9.9e-05 22.1 0.3 0.13 12.1 0.0 2.6 2 0 0 2 2 2 2 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_24 PF13412.6 AHV91546.1 - 0.00012 21.5 0.2 0.0012 18.4 0.3 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_3 PF01381.22 AHV91546.1 - 0.00013 22.0 0.7 0.0076 16.3 0.3 2.4 2 0 0 2 2 2 1 Helix-turn-helix HTH_Crp_2 PF13545.6 AHV91546.1 - 0.0002 21.3 0.4 0.0015 18.5 0.2 2.2 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_31 PF13560.6 AHV91546.1 - 0.00027 21.2 6.9 0.0014 18.9 2.8 2.9 2 2 0 2 2 2 1 Helix-turn-helix domain Trp_repressor PF01371.19 AHV91546.1 - 0.00036 20.6 0.2 0.0033 17.5 0.1 2.0 2 0 0 2 2 2 1 Trp repressor protein LacI PF00356.21 AHV91546.1 - 0.00049 19.8 1.2 0.0027 17.5 0.7 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family CENP-B_N PF04218.13 AHV91546.1 - 0.00051 19.6 0.0 0.88 9.2 0.1 2.3 2 0 0 2 2 2 2 CENP-B N-terminal DNA-binding domain HTH_5 PF01022.20 AHV91546.1 - 0.00067 19.5 0.0 0.5 10.3 0.0 2.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.19 AHV91546.1 - 0.00069 19.8 0.0 0.018 15.2 0.0 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain SpoIIID PF12116.8 AHV91546.1 - 0.00094 19.2 0.0 0.54 10.4 0.0 2.2 2 0 0 2 2 2 1 Stage III sporulation protein D HTH_IclR PF09339.10 AHV91546.1 - 0.00099 18.9 1.6 0.019 14.7 0.7 2.5 2 0 0 2 2 2 1 IclR helix-turn-helix domain RepB PF07506.11 AHV91546.1 - 0.0011 19.1 0.2 0.21 11.6 0.1 2.3 1 1 1 2 2 2 1 RepB plasmid partitioning protein HTH_11 PF08279.12 AHV91546.1 - 0.0014 18.5 0.5 0.008 16.1 0.5 2.1 2 0 0 2 2 2 1 HTH domain HTH_psq PF05225.16 AHV91546.1 - 0.0016 18.1 0.5 1.3 8.8 0.5 2.3 2 0 0 2 2 2 1 helix-turn-helix, Psq domain GntR PF00392.21 AHV91546.1 - 0.0021 17.6 0.8 0.28 10.8 0.4 2.4 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_AsnC-type PF13404.6 AHV91546.1 - 0.0023 17.7 3.1 0.03 14.2 1.4 2.6 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_Tnp_1 PF01527.20 AHV91546.1 - 0.0025 18.1 0.4 0.052 13.9 0.0 2.2 1 1 1 2 2 2 1 Transposase HTH_17 PF12728.7 AHV91546.1 - 0.003 17.7 0.1 3.5 7.9 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_10 PF04967.12 AHV91546.1 - 0.0047 16.7 0.1 0.028 14.2 0.2 2.0 2 0 0 2 2 2 1 HTH DNA binding domain HTH_35 PF13693.6 AHV91546.1 - 0.0051 16.8 0.9 0.038 14.0 0.6 2.2 1 1 1 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_30 PF13556.6 AHV91546.1 - 0.0058 16.4 0.1 0.97 9.3 0.0 2.3 2 0 0 2 2 2 1 PucR C-terminal helix-turn-helix domain UPF0175 PF03683.13 AHV91546.1 - 0.0061 16.2 0.4 0.052 13.3 0.1 2.2 2 1 1 3 3 2 1 Uncharacterised protein family (UPF0175) HTH_37 PF13744.6 AHV91546.1 - 0.0076 16.2 0.1 0.065 13.2 0.1 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Tnp_4 PF13613.6 AHV91546.1 - 0.0098 15.6 0.1 0.038 13.7 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix of DDE superfamily endonuclease Crp PF00325.20 AHV91546.1 - 0.015 15.0 1.5 0.036 13.7 0.5 2.1 2 0 0 2 2 2 0 Bacterial regulatory proteins, crp family HTH_36 PF13730.6 AHV91546.1 - 0.016 15.1 0.0 0.32 11.0 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain MerR PF00376.23 AHV91546.1 - 0.017 14.9 1.3 1.9 8.3 0.0 2.8 3 0 0 3 3 2 0 MerR family regulatory protein MarR PF01047.22 AHV91546.1 - 0.02 14.8 0.1 0.08 12.9 0.1 2.0 2 0 0 2 2 2 0 MarR family P22_Cro PF14549.6 AHV91546.1 - 0.027 14.3 2.0 5.1 7.0 0.1 2.3 2 0 0 2 2 2 0 DNA-binding transcriptional regulator Cro DUF746 PF05344.11 AHV91546.1 - 0.036 13.9 0.1 0.54 10.1 0.0 2.2 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) HTH_1 PF00126.27 AHV91546.1 - 0.046 13.7 3.0 2.7 8.0 0.5 2.4 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_DeoR PF08220.12 AHV91546.1 - 0.054 13.3 0.1 5.6 6.8 0.0 2.2 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain Glyc_hyd_38C_2 PF18230.1 AHV91546.1 - 0.059 13.5 0.0 0.63 10.2 0.0 2.1 2 0 0 2 2 2 0 Glycosyl hydrolases family 38 C-terminal sub-domain HTH_Tnp_Tc3_2 PF01498.18 AHV91546.1 - 0.076 13.3 1.5 0.24 11.7 0.1 2.5 2 0 0 2 2 2 0 Transposase Sigma54_DBD PF04552.13 AHV91546.1 - 0.09 12.5 0.1 0.16 11.7 0.1 1.4 1 0 0 1 1 1 0 Sigma-54, DNA binding domain HTH_8 PF02954.19 AHV91546.1 - 0.098 12.5 0.9 8.2 6.3 0.8 2.3 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family TrmB PF01978.19 AHV91546.1 - 0.11 12.3 0.0 0.34 10.8 0.1 1.7 2 0 0 2 2 1 0 Sugar-specific transcriptional regulator TrmB HTH_7 PF02796.15 AHV91546.1 - 0.12 12.5 0.4 0.28 11.3 0.1 1.7 2 0 0 2 2 1 0 Helix-turn-helix domain of resolvase DUF1804 PF08822.11 AHV91546.1 - 0.13 12.2 0.2 10 6.1 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1804) HTH_26 PF13443.6 AHV91546.1 - 0.19 12.2 0.0 2 8.9 0.1 2.1 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain DUF977 PF06163.11 AHV91546.1 - 0.2 11.6 0.6 11 6.0 0.1 2.3 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF977) MerR_1 PF13411.6 AHV91546.1 - 0.23 11.6 0.9 1.4 9.1 0.0 2.3 3 0 0 3 3 2 0 MerR HTH family regulatory protein Mntp PF02659.15 AHV91547.1 - 1.7e-49 167.5 10.6 1.7e-49 167.5 10.6 2.0 2 0 0 2 2 2 2 Putative manganese efflux pump DUF1254 PF06863.12 AHV91548.1 - 6.6e-40 136.3 0.8 1.1e-38 132.4 0.3 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF1254) DUF1214 PF06742.11 AHV91548.1 - 4.9e-33 113.9 0.1 8.8e-33 113.0 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1214) TctC PF03401.14 AHV91549.1 - 1.2e-64 218.0 0.0 1.5e-64 217.7 0.0 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor Phosphonate-bd PF12974.7 AHV91549.1 - 2.2e-05 24.2 0.1 5.7e-05 22.8 0.1 1.7 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein MotA_ExbB PF01618.16 AHV91550.1 - 4.3e-33 113.8 0.1 8.9e-33 112.7 0.1 1.5 1 0 0 1 1 1 1 MotA/TolQ/ExbB proton channel family FAD_binding_9 PF08021.11 AHV91551.1 - 1.9e-33 115.3 0.0 3.2e-33 114.5 0.0 1.4 1 0 0 1 1 1 1 Siderophore-interacting FAD-binding domain SIP PF04954.13 AHV91551.1 - 4.4e-18 65.9 0.1 8e-18 65.1 0.1 1.4 1 0 0 1 1 1 1 Siderophore-interacting protein HTH_3 PF01381.22 AHV91552.1 - 2.7e-08 33.7 0.0 3.7e-08 33.3 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix HTH_26 PF13443.6 AHV91552.1 - 7.9e-07 29.4 0.1 1.7e-06 28.3 0.1 1.6 2 0 0 2 2 2 1 Cro/C1-type HTH DNA-binding domain HTH_31 PF13560.6 AHV91552.1 - 9e-07 29.2 0.2 1.7e-06 28.3 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 AHV91552.1 - 0.00016 21.6 0.0 0.00023 21.1 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain Cupin_2 PF07883.11 AHV91552.1 - 0.015 15.0 0.0 0.024 14.3 0.0 1.3 1 0 0 1 1 1 0 Cupin domain LacI PF00356.21 AHV91552.1 - 0.088 12.6 0.1 0.23 11.3 0.1 1.7 1 1 0 1 1 1 0 Bacterial regulatory proteins, lacI family DUF1653 PF07866.11 AHV91553.1 - 5.7e-13 49.0 0.0 6.5e-13 48.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1653) SLT_2 PF13406.6 AHV91555.1 - 5.4e-100 334.4 0.0 6.8e-100 334.1 0.0 1.1 1 0 0 1 1 1 1 Transglycosylase SLT domain PG_binding_1 PF01471.18 AHV91555.1 - 1.4e-13 50.8 1.5 2.3e-13 50.1 0.3 2.0 3 0 0 3 3 3 1 Putative peptidoglycan binding domain PG_binding_3 PF09374.10 AHV91555.1 - 3.7e-05 23.9 1.6 0.012 15.8 0.3 2.6 1 1 1 2 2 2 2 Predicted Peptidoglycan domain PG_binding_2 PF08823.11 AHV91555.1 - 0.018 15.3 0.0 0.066 13.5 0.0 2.0 1 1 1 2 2 2 0 Putative peptidoglycan binding domain Glucosaminidase PF01832.20 AHV91555.1 - 0.095 13.2 0.0 0.21 12.1 0.0 1.6 1 0 0 1 1 1 0 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase FG-GAP PF01839.23 AHV91555.1 - 0.13 12.4 0.3 0.37 11.0 0.3 1.7 1 0 0 1 1 1 0 FG-GAP repeat PEGA PF08308.11 AHV91557.1 - 0.076 12.9 0.0 0.14 12.1 0.0 1.3 1 0 0 1 1 1 0 PEGA domain TctB PF07331.11 AHV91558.1 - 1.3e-22 80.6 20.3 1.6e-22 80.3 20.3 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctB family UPF0444 PF15475.6 AHV91558.1 - 0.077 13.3 0.1 0.12 12.7 0.1 1.3 1 0 0 1 1 1 0 Transmembrane protein C12orf23, UPF0444 7TM_GPCR_Srw PF10324.9 AHV91558.1 - 0.14 11.4 0.2 0.14 11.4 0.2 2.0 1 1 1 2 2 2 0 Serpentine type 7TM GPCR chemoreceptor Srw Abhydrolase_9_N PF15420.6 AHV91558.1 - 0.25 11.3 7.4 0.075 13.0 4.1 1.6 1 1 1 2 2 2 0 Alpha/beta-hydrolase family N-terminus Lectin_N PF03954.14 AHV91558.1 - 0.81 9.4 2.4 24 4.7 2.1 2.1 2 0 0 2 2 2 0 Hepatic lectin, N-terminal domain Aconitase PF00330.20 AHV91559.1 - 6.4e-179 595.8 0.0 8e-179 595.5 0.0 1.1 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) BPD_transp_2 PF02653.16 AHV91561.1 - 1.2e-07 31.2 9.5 1.3e-07 31.1 9.5 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component DoxX_2 PF13564.6 AHV91561.1 - 0.079 13.1 7.7 0.11 12.6 7.7 1.2 1 0 0 1 1 1 0 DoxX-like family CCB1 PF12046.8 AHV91561.1 - 0.2 11.0 1.8 0.23 10.8 1.5 1.2 1 1 0 1 1 1 0 Cofactor assembly of complex C subunit B DUF4229 PF14012.6 AHV91561.1 - 7.2 6.8 11.0 0.59 10.3 5.7 1.9 2 1 0 2 2 2 0 Protein of unknown function (DUF4229) HxlR PF01638.17 AHV91562.1 - 2.7e-24 84.8 0.0 3.3e-24 84.5 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_20 PF12840.7 AHV91562.1 - 7.2e-05 22.8 0.2 0.013 15.6 0.2 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 AHV91562.1 - 0.0012 18.8 0.0 0.79 9.7 0.0 2.3 2 0 0 2 2 2 2 Crp-like helix-turn-helix domain HTH_34 PF13601.6 AHV91562.1 - 0.0012 18.9 0.0 0.0018 18.4 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain PadR PF03551.14 AHV91562.1 - 0.0015 18.4 0.0 0.0024 17.8 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.6 AHV91562.1 - 0.003 17.5 0.0 0.0043 17.0 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix MarR PF01047.22 AHV91562.1 - 0.012 15.5 0.2 0.027 14.4 0.0 1.6 2 0 0 2 2 2 0 MarR family MarR_2 PF12802.7 AHV91562.1 - 0.014 15.2 1.3 0.047 13.6 0.3 2.2 2 1 1 3 3 3 0 MarR family BLACT_WH PF17778.1 AHV91562.1 - 0.022 14.7 0.0 0.066 13.2 0.0 1.8 1 0 0 1 1 1 0 Beta-lactamase associated winged helix domain RP-C PF03428.13 AHV91562.1 - 0.037 13.7 0.0 0.051 13.2 0.0 1.3 1 0 0 1 1 1 0 Replication protein C N-terminal domain HTH_5 PF01022.20 AHV91562.1 - 0.04 13.8 0.0 0.076 12.9 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 AHV91562.1 - 0.086 12.4 0.1 0.19 11.3 0.0 1.6 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding GntR PF00392.21 AHV91562.1 - 0.098 12.3 1.0 1.5 8.6 0.0 2.4 3 0 0 3 3 3 0 Bacterial regulatory proteins, gntR family Porin_4 PF13609.6 AHV91563.1 - 4.2e-49 168.0 24.4 5.2e-49 167.7 24.4 1.0 1 0 0 1 1 1 1 Gram-negative porin Porin_1 PF00267.21 AHV91563.1 - 2.6e-11 43.6 11.8 5.2e-11 42.6 11.8 1.5 1 1 0 1 1 1 1 Gram-negative porin SspB PF04386.13 AHV91564.1 - 2.3e-33 115.4 0.0 2.6e-33 115.2 0.0 1.0 1 0 0 1 1 1 1 Stringent starvation protein B PEP-utilizers_C PF02896.18 AHV91565.1 - 1.4e-102 342.8 0.0 2.3e-102 342.1 0.0 1.3 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilisers_N PF05524.13 AHV91565.1 - 8.8e-25 87.1 5.6 3e-24 85.4 1.9 2.5 2 0 0 2 2 2 1 PEP-utilising enzyme, N-terminal PEP-utilizers PF00391.23 AHV91565.1 - 9.2e-23 79.8 1.2 2.8e-22 78.2 1.2 1.9 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain NAD_binding_2 PF03446.15 AHV91566.1 - 3.1e-40 137.9 2.2 4.8e-40 137.3 2.2 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.6 AHV91566.1 - 1.4e-38 131.9 0.5 3.3e-38 130.7 0.5 1.7 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 2-Hacid_dh_C PF02826.19 AHV91566.1 - 4.3e-07 29.5 0.0 7.8e-07 28.6 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 AHV91566.1 - 2e-06 28.3 0.1 4.4e-06 27.2 0.1 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.18 AHV91566.1 - 0.0011 18.9 0.2 0.0033 17.3 0.1 1.8 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 AHV91566.1 - 0.0096 15.9 0.3 0.4 10.6 0.3 2.3 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus IlvN PF07991.12 AHV91566.1 - 0.012 15.2 0.0 0.022 14.3 0.0 1.5 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain Shikimate_DH PF01488.20 AHV91566.1 - 0.032 14.3 0.0 0.078 13.0 0.0 1.6 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase Vert_HS_TF PF06546.11 AHV91566.1 - 0.055 13.1 0.1 0.089 12.4 0.1 1.2 1 0 0 1 1 1 0 Vertebrate heat shock transcription factor GFO_IDH_MocA PF01408.22 AHV91566.1 - 0.14 13.0 0.0 0.28 12.0 0.0 1.5 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold rve_3 PF13683.6 AHV91567.1 - 8.3e-32 108.8 0.1 4.5e-31 106.4 0.0 2.2 2 0 0 2 2 2 1 Integrase core domain rve PF00665.26 AHV91567.1 - 4.2e-25 88.2 0.0 1.1e-23 83.7 0.0 2.2 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 AHV91567.1 - 1.8e-11 44.0 8.6 3.6e-11 43.0 8.6 1.5 1 0 0 1 1 1 1 HTH-like domain rve_2 PF13333.6 AHV91567.1 - 5.8e-07 29.6 0.0 1.3e-06 28.5 0.0 1.6 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AHV91567.1 - 0.00041 20.6 0.0 0.00091 19.5 0.0 1.6 1 1 1 2 2 2 1 DDE domain Rhomboid_SP PF12595.8 AHV91567.1 - 0.0081 15.6 0.3 2.2 7.6 0.0 2.3 1 1 0 2 2 2 2 Rhomboid serine protease DUF1780 PF08682.10 AHV91567.1 - 0.13 11.9 1.0 1.6 8.3 0.3 2.2 2 0 0 2 2 2 0 Putative endonuclease, protein of unknown function (DUF1780) Sugar_tr PF00083.24 AHV91568.1 - 1.5e-11 43.9 5.1 1.5e-11 43.9 5.1 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 AHV91568.1 - 1.9e-11 43.5 6.7 2.2e-11 43.3 6.7 1.1 1 0 0 1 1 1 1 Major Facilitator Superfamily MFS_2 PF13347.6 AHV91568.1 - 6.9e-05 21.6 6.0 8.5e-05 21.3 6.0 1.0 1 0 0 1 1 1 1 MFS/sugar transport protein LacY_symp PF01306.19 AHV91568.1 - 0.0025 16.6 2.6 0.0029 16.5 2.6 1.1 1 0 0 1 1 1 1 LacY proton/sugar symporter MFS_1_like PF12832.7 AHV91568.1 - 0.012 14.5 0.9 0.013 14.4 0.9 1.1 1 0 0 1 1 1 0 MFS_1 like family TRI12 PF06609.13 AHV91568.1 - 0.023 13.1 0.5 0.026 13.0 0.5 1.1 1 0 0 1 1 1 0 Fungal trichothecene efflux pump (TRI12) Caa3_CtaG PF09678.10 AHV91568.1 - 0.026 14.0 1.8 0.03 13.8 1.8 1.1 1 0 0 1 1 1 0 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) Cyt_bd_oxida_I PF01654.17 AHV91568.1 - 0.043 12.4 1.2 0.045 12.4 1.2 1.1 1 0 0 1 1 1 0 Cytochrome bd terminal oxidase subunit I OATP PF03137.20 AHV91568.1 - 0.71 8.1 3.4 0.75 8.0 3.4 1.0 1 0 0 1 1 1 0 Organic Anion Transporter Polypeptide (OATP) family NAD_binding_2 PF03446.15 AHV91569.1 - 9.5e-45 152.6 2.7 1.6e-44 151.9 2.7 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.6 AHV91569.1 - 3.3e-31 108.1 0.7 5.6e-31 107.3 0.7 1.4 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 2-Hacid_dh_C PF02826.19 AHV91569.1 - 1.6e-07 30.9 0.1 2.3e-07 30.3 0.1 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 AHV91569.1 - 1.6e-05 25.4 0.2 4.4e-05 24.0 0.0 1.8 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_N PF03721.14 AHV91569.1 - 0.0028 17.2 0.0 0.09 12.3 0.0 2.3 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ApbA PF02558.16 AHV91569.1 - 0.004 16.8 0.1 0.057 13.1 0.0 2.1 1 1 1 2 2 2 1 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_C PF07479.14 AHV91569.1 - 0.006 16.9 1.0 0.038 14.3 1.2 2.1 2 1 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus DUF2148 PF09918.9 AHV91569.1 - 0.041 13.9 0.2 0.16 12.0 0.2 2.0 1 0 0 1 1 1 0 Uncharacterized protein containing a ferredoxin domain (DUF2148) 3HCDH_N PF02737.18 AHV91569.1 - 0.045 13.6 0.1 0.081 12.8 0.1 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ACT PF01842.25 AHV91570.1 - 1.1e-06 28.2 0.4 2.3e-06 27.3 0.4 1.6 1 1 0 1 1 1 1 ACT domain ACT_4 PF13291.6 AHV91570.1 - 0.00012 22.6 0.1 0.00021 21.8 0.1 1.3 1 0 0 1 1 1 1 ACT domain PALP PF00291.25 AHV91570.1 - 0.001 18.6 0.2 0.0015 18.0 0.2 1.3 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme DDE_Tnp_ISL3 PF01610.17 AHV91571.1 - 2e-64 217.6 1.2 2.8e-64 217.1 0.2 1.6 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV91571.1 - 1.4e-11 43.6 0.1 3.6e-11 42.3 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV91571.1 - 5.4e-09 36.6 11.2 1.1e-08 35.6 11.2 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV91571.1 - 0.0056 16.7 0.2 0.016 15.3 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain SLT_L PF14718.6 AHV91571.1 - 0.016 15.3 1.5 0.016 15.3 1.5 1.8 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain NOB1_Zn_bind PF08772.11 AHV91571.1 - 0.017 15.2 0.2 1.2 9.3 0.0 2.5 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-IS66 PF13005.7 AHV91571.1 - 1.2 9.6 6.6 3.6 8.1 6.6 1.9 1 0 0 1 1 1 0 zinc-finger binding domain of transposase IS66 Sigma54_activat PF00158.26 AHV91572.1 - 2.5e-66 222.5 0.0 3.5e-66 222.1 0.0 1.2 1 0 0 1 1 1 1 Sigma-54 interaction domain Sigma54_activ_2 PF14532.6 AHV91572.1 - 2.5e-24 86.0 0.0 8.1e-24 84.3 0.0 1.9 2 1 0 2 2 2 1 Sigma-54 interaction domain Response_reg PF00072.24 AHV91572.1 - 5.3e-24 84.5 0.1 1.4e-23 83.2 0.0 1.8 2 0 0 2 2 2 1 Response regulator receiver domain HTH_8 PF02954.19 AHV91572.1 - 2.1e-07 30.6 0.1 5.7e-07 29.2 0.1 1.8 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family AAA_5 PF07728.14 AHV91572.1 - 2e-06 27.9 0.0 3.7e-06 27.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_2 PF07724.14 AHV91572.1 - 0.00083 19.5 0.0 0.0016 18.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA PF00004.29 AHV91572.1 - 0.0016 18.8 0.0 0.026 14.9 0.0 2.2 1 1 1 2 2 2 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.21 AHV91572.1 - 0.0069 15.8 0.0 0.99 8.7 0.0 2.2 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_7 PF12775.7 AHV91572.1 - 0.057 12.9 0.0 0.099 12.1 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region UPF0175 PF03683.13 AHV91572.1 - 0.092 12.5 0.0 0.27 10.9 0.0 1.8 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0175) IIGP PF05049.13 AHV91572.1 - 0.2 10.7 0.0 0.31 10.0 0.0 1.2 1 0 0 1 1 1 0 Interferon-inducible GTPase (IIGP) PaaA_PaaC PF05138.12 AHV91573.1 - 1.1e-95 319.8 1.7 1.2e-95 319.6 1.7 1.0 1 0 0 1 1 1 1 Phenylacetic acid catabolic protein DUF615 PF04751.14 AHV91574.1 - 1.5e-42 145.2 10.3 1.7e-42 145.0 10.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF615) YaeQ PF07152.12 AHV91575.1 - 9.6e-77 256.5 0.0 1.1e-76 256.3 0.0 1.0 1 0 0 1 1 1 1 YaeQ protein Porphobil_deam PF01379.20 AHV91576.1 - 2e-79 265.9 0.1 2.7e-79 265.4 0.1 1.2 1 0 0 1 1 1 1 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.15 AHV91576.1 - 2.3e-16 59.9 0.1 4e-16 59.2 0.1 1.4 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain rve_3 PF13683.6 AHV91577.1 - 4e-26 90.6 0.1 4.7e-26 90.3 0.1 1.1 1 0 0 1 1 1 1 Integrase core domain rve_2 PF13333.6 AHV91577.1 - 5.8e-08 32.8 0.0 7.4e-08 32.5 0.0 1.1 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AHV91577.1 - 0.003 17.8 0.0 0.0035 17.6 0.0 1.1 1 0 0 1 1 1 1 DDE domain ACR_tran PF00873.19 AHV91579.1 - 0 1334.3 8.2 0 1334.1 8.2 1.0 1 0 0 1 1 1 1 AcrB/AcrD/AcrF family MMPL PF03176.15 AHV91579.1 - 3.8e-13 49.1 28.5 2.1e-07 30.2 11.4 2.5 2 0 0 2 2 2 2 MMPL family SecD_SecF PF02355.16 AHV91579.1 - 7.4e-07 28.7 25.9 6.3e-05 22.4 2.9 2.4 2 0 0 2 2 2 2 Protein export membrane protein Patched PF02460.18 AHV91579.1 - 0.013 13.6 12.2 0.02 13.0 12.2 1.3 1 0 0 1 1 1 0 Patched family DUF2818 PF10993.8 AHV91580.1 - 5.1e-35 119.9 5.7 5.8e-35 119.7 5.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2818) Amidohydro_2 PF04909.14 AHV91581.1 - 1.9e-25 90.3 0.1 2.1e-25 90.1 0.1 1.0 1 0 0 1 1 1 1 Amidohydrolase HhH-GPD PF00730.25 AHV91582.1 - 1.1e-12 48.3 0.0 1.8e-12 47.7 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein SIS PF01380.22 AHV91584.1 - 2.8e-17 62.8 0.4 1.8e-15 57.0 0.1 2.3 2 0 0 2 2 2 1 SIS domain HTH_6 PF01418.17 AHV91584.1 - 3.1e-14 52.7 0.0 1.5e-13 50.6 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain, rpiR family HTH_17 PF12728.7 AHV91584.1 - 0.028 14.6 0.0 0.05 13.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain LacI PF00356.21 AHV91584.1 - 0.052 13.3 1.6 0.08 12.7 0.2 2.1 2 0 0 2 2 2 0 Bacterial regulatory proteins, lacI family UPF0175 PF03683.13 AHV91584.1 - 0.082 12.6 0.0 0.31 10.8 0.0 2.0 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0175) FlgN PF05130.12 AHV91585.1 - 0.0065 17.0 1.0 0.0086 16.6 1.0 1.2 1 0 0 1 1 1 1 FlgN protein CompInhib_SCIN PF11546.8 AHV91585.1 - 0.02 14.9 0.0 0.023 14.7 0.0 1.2 1 0 0 1 1 1 0 Staphylococcal complement inhibitor SCIN DUF3349 PF11829.8 AHV91585.1 - 0.075 13.8 0.3 6.7 7.6 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3349) TPR_19 PF14559.6 AHV91585.1 - 0.15 12.6 7.2 0.39 11.3 7.2 1.7 1 1 0 1 1 1 0 Tetratricopeptide repeat NUDIX PF00293.28 AHV91586.1 - 6.1e-24 84.5 0.5 9.3e-24 84.0 0.5 1.3 1 0 0 1 1 1 1 NUDIX domain ABC_tran PF00005.27 AHV91587.1 - 1.8e-36 125.7 0.0 2.7e-36 125.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_3 PF12857.7 AHV91587.1 - 1.4e-15 56.9 0.8 4.8e-15 55.2 0.8 2.0 1 0 0 1 1 1 1 TOBE-like domain AAA_21 PF13304.6 AHV91587.1 - 1.1e-09 38.5 0.6 0.00084 19.2 0.1 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system CysA_C_terminal PF17850.1 AHV91587.1 - 4.2e-08 33.6 0.1 1e-07 32.4 0.1 1.7 1 0 0 1 1 1 1 CysA C-terminal regulatory domain SMC_N PF02463.19 AHV91587.1 - 5.5e-06 26.0 0.0 1.1e-05 25.0 0.0 1.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 AHV91587.1 - 0.00014 22.3 1.4 0.00046 20.6 1.4 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 AHV91587.1 - 0.00027 21.4 0.0 0.0028 18.1 0.0 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TniB PF05621.11 AHV91587.1 - 0.0016 17.9 0.0 0.091 12.2 0.0 2.2 1 1 1 2 2 2 1 Bacterial TniB protein AAA_22 PF13401.6 AHV91587.1 - 0.0019 18.5 0.4 0.01 16.1 0.4 2.0 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 AHV91587.1 - 0.0019 17.9 0.0 0.0049 16.6 0.0 1.6 1 1 0 1 1 1 1 AAA domain NACHT PF05729.12 AHV91587.1 - 0.0025 17.7 0.7 0.027 14.4 0.1 2.1 2 0 0 2 2 2 1 NACHT domain AAA_23 PF13476.6 AHV91587.1 - 0.0031 18.0 0.0 0.0051 17.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 AHV91587.1 - 0.0044 16.9 0.0 0.0074 16.2 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase Rad17 PF03215.15 AHV91587.1 - 0.0058 16.6 0.0 0.011 15.7 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain PhoH PF02562.16 AHV91587.1 - 0.0076 15.7 0.0 1.4 8.3 0.0 2.2 2 0 0 2 2 2 1 PhoH-like protein SbcCD_C PF13558.6 AHV91587.1 - 0.0098 16.1 0.1 0.071 13.4 0.1 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit ATPase PF06745.13 AHV91587.1 - 0.014 14.8 0.0 0.73 9.1 0.0 2.1 2 0 0 2 2 2 0 KaiC AAA_15 PF13175.6 AHV91587.1 - 0.014 15.1 0.0 0.018 14.7 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain AAA_25 PF13481.6 AHV91587.1 - 0.014 15.0 2.2 0.022 14.3 0.3 2.2 2 1 0 2 2 2 0 AAA domain AAA_29 PF13555.6 AHV91587.1 - 0.016 14.9 0.0 0.032 14.0 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain ATPase_2 PF01637.18 AHV91587.1 - 0.02 14.8 0.0 0.065 13.1 0.0 1.7 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_28 PF13521.6 AHV91587.1 - 0.023 15.0 0.1 0.065 13.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 AHV91587.1 - 0.025 15.1 0.0 0.051 14.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain TOBE PF03459.17 AHV91587.1 - 0.028 14.7 0.3 0.11 12.8 0.0 2.2 3 0 0 3 3 1 0 TOBE domain IstB_IS21 PF01695.17 AHV91587.1 - 0.034 13.9 0.0 0.14 11.9 0.0 1.9 2 1 1 3 3 2 0 IstB-like ATP binding protein AAA_33 PF13671.6 AHV91587.1 - 0.036 14.2 0.1 0.14 12.3 0.1 2.1 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.14 AHV91587.1 - 0.06 13.3 0.1 0.19 11.7 0.0 1.8 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_14 PF13173.6 AHV91587.1 - 0.061 13.3 0.0 0.44 10.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 AHV91587.1 - 0.12 12.1 0.1 1.3 8.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain TsaE PF02367.17 AHV91587.1 - 0.14 12.1 0.0 0.26 11.3 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE PduV-EutP PF10662.9 AHV91587.1 - 0.24 11.1 0.0 0.41 10.4 0.0 1.3 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation ABC_ATPase PF09818.9 AHV91587.1 - 0.24 10.1 0.5 2.5 6.8 0.0 2.5 2 1 0 2 2 2 0 Predicted ATPase of the ABC class rve PF00665.26 AHV91589.1 - 2.9e-32 111.3 0.7 4.3e-32 110.8 0.1 1.6 2 0 0 2 2 1 1 Integrase core domain LZ_Tnp_IS481 PF13011.6 AHV91589.1 - 1.9e-21 76.3 2.6 1.1e-19 70.7 0.4 2.6 1 1 1 2 2 2 1 leucine-zipper of insertion element IS481 rve_3 PF13683.6 AHV91589.1 - 5.1e-19 67.8 2.7 1.2e-18 66.6 2.7 1.7 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.6 AHV91589.1 - 1.6e-16 59.6 4.2 1.2e-07 31.3 0.1 2.7 2 0 0 2 2 2 2 Homeodomain-like domain HTH_28 PF13518.6 AHV91589.1 - 5.9e-15 55.1 6.1 5.9e-11 42.3 0.1 3.4 4 0 0 4 4 3 2 Helix-turn-helix domain HTH_29 PF13551.6 AHV91589.1 - 1.8e-11 43.9 0.5 2.6e-06 27.4 0.0 2.6 2 0 0 2 2 2 2 Winged helix-turn helix HTH_32 PF13565.6 AHV91589.1 - 3.8e-10 40.2 0.7 3.8e-10 40.2 0.7 2.4 2 1 0 2 2 2 1 Homeodomain-like domain HTH_38 PF13936.6 AHV91589.1 - 5.4e-06 26.1 0.5 1.9e-05 24.3 0.4 2.1 2 0 0 2 2 1 1 Helix-turn-helix domain MarR_2 PF12802.7 AHV91589.1 - 3e-05 23.8 3.0 0.00037 20.3 1.1 2.6 2 0 0 2 2 2 1 MarR family HTH_31 PF13560.6 AHV91589.1 - 6.8e-05 23.1 1.5 0.0033 17.8 0.3 3.2 3 0 0 3 3 3 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 AHV91589.1 - 0.00013 21.4 0.1 0.0016 17.9 0.2 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 YdaS_antitoxin PF15943.5 AHV91589.1 - 0.0003 20.6 0.2 0.33 10.9 0.0 2.8 2 0 0 2 2 2 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT Sigma70_r4_2 PF08281.12 AHV91589.1 - 0.00043 19.9 0.1 0.092 12.4 0.2 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_Tnp_ISL3 PF13542.6 AHV91589.1 - 0.00057 19.3 8.6 0.0047 16.3 0.6 3.9 4 0 0 4 4 3 1 Helix-turn-helix domain of transposase family ISL3 HTH_24 PF13412.6 AHV91589.1 - 0.00062 19.3 0.2 0.0045 16.5 0.3 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_3 PF01381.22 AHV91589.1 - 0.00094 19.2 0.6 0.041 14.0 0.2 2.5 2 0 0 2 2 2 1 Helix-turn-helix LacI PF00356.21 AHV91589.1 - 0.0015 18.3 1.6 0.0044 16.8 0.6 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family Trp_repressor PF01371.19 AHV91589.1 - 0.0016 18.5 0.2 0.012 15.7 0.1 2.2 2 0 0 2 2 2 1 Trp repressor protein HTH_Crp_2 PF13545.6 AHV91589.1 - 0.002 18.1 0.3 0.013 15.4 0.1 2.3 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain SpoIIID PF12116.8 AHV91589.1 - 0.003 17.6 0.0 1.1 9.4 0.0 2.4 2 0 0 2 2 2 1 Stage III sporulation protein D HTH_Tnp_1 PF01527.20 AHV91589.1 - 0.0042 17.4 0.4 0.11 12.8 0.0 2.7 1 1 1 2 2 2 1 Transposase CENP-B_N PF04218.13 AHV91589.1 - 0.0046 16.6 0.0 3.7 7.2 0.0 2.3 2 0 0 2 2 2 1 CENP-B N-terminal DNA-binding domain Fe_dep_repress PF01325.19 AHV91589.1 - 0.0051 17.0 0.0 0.086 13.1 0.1 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.20 AHV91589.1 - 0.0056 16.5 0.0 2.2 8.2 0.0 2.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 AHV91589.1 - 0.0079 16.0 0.9 0.12 12.1 0.4 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_17 PF12728.7 AHV91589.1 - 0.0082 16.3 0.6 6.1 7.1 0.0 3.3 3 1 0 3 3 3 0 Helix-turn-helix domain HTH_AsnC-type PF13404.6 AHV91589.1 - 0.0095 15.7 2.3 0.13 12.1 0.9 2.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain GntR PF00392.21 AHV91589.1 - 0.013 15.1 0.8 1.2 8.8 0.3 2.6 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_psq PF05225.16 AHV91589.1 - 0.017 14.8 0.5 8.2 6.3 0.0 2.9 3 0 0 3 3 3 0 helix-turn-helix, Psq domain HTH_11 PF08279.12 AHV91589.1 - 0.026 14.5 0.5 0.15 12.0 0.5 2.2 2 0 0 2 2 2 0 HTH domain HTH_10 PF04967.12 AHV91589.1 - 0.027 14.2 0.0 0.17 11.7 0.1 2.2 2 0 0 2 2 2 0 HTH DNA binding domain RepB PF07506.11 AHV91589.1 - 0.03 14.4 0.1 3.7 7.6 0.1 2.3 1 1 1 2 2 2 0 RepB plasmid partitioning protein HTH_Tnp_4 PF13613.6 AHV91589.1 - 0.033 13.9 0.1 0.13 12.0 0.1 2.0 2 0 0 2 2 1 0 Helix-turn-helix of DDE superfamily endonuclease HTH_35 PF13693.6 AHV91589.1 - 0.034 14.2 1.2 0.3 11.2 0.4 2.7 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding HTH_30 PF13556.6 AHV91589.1 - 0.034 14.0 0.0 2 8.3 0.0 2.5 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain DDE_Tnp_IS240 PF13610.6 AHV91589.1 - 0.048 13.9 0.1 0.071 13.3 0.1 1.3 1 0 0 1 1 1 0 DDE domain P22_Cro PF14549.6 AHV91589.1 - 0.062 13.2 1.5 9.6 6.1 0.1 2.5 2 0 0 2 2 2 0 DNA-binding transcriptional regulator Cro HTH_37 PF13744.6 AHV91589.1 - 0.068 13.1 0.1 0.55 10.2 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain UPF0175 PF03683.13 AHV91589.1 - 0.073 12.8 0.3 0.56 10.0 0.1 2.4 2 1 0 2 2 2 0 Uncharacterised protein family (UPF0175) HTH_1 PF00126.27 AHV91589.1 - 0.098 12.6 1.9 7.3 6.6 0.2 2.6 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family Crp PF00325.20 AHV91589.1 - 0.11 12.2 2.8 0.16 11.6 0.4 2.6 3 0 0 3 3 3 0 Bacterial regulatory proteins, crp family DUF746 PF05344.11 AHV91589.1 - 0.11 12.3 0.1 0.98 9.3 0.0 2.3 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) MarR PF01047.22 AHV91589.1 - 0.11 12.4 0.1 0.36 10.8 0.1 1.8 2 0 0 2 2 1 0 MarR family KORA PF16509.5 AHV91589.1 - 0.14 12.5 0.1 14 6.0 0.0 3.0 3 0 0 3 3 3 0 TrfB plasmid transcriptional repressor HTH_36 PF13730.6 AHV91589.1 - 0.17 11.8 0.0 5.2 7.1 0.0 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_Tnp_Tc3_2 PF01498.18 AHV91589.1 - 0.38 11.0 2.7 0.63 10.3 0.1 2.6 3 0 0 3 3 1 0 Transposase MerR PF00376.23 AHV91589.1 - 0.77 9.6 6.8 3.2 7.6 0.0 3.6 4 0 0 4 4 2 0 MerR family regulatory protein ChaC PF04752.12 AHV91590.1 - 1e-28 100.6 0.0 1.1e-28 100.4 0.0 1.0 1 0 0 1 1 1 1 ChaC-like protein Semialdhyde_dh PF01118.24 AHV91591.1 - 8.6e-10 39.1 0.0 4.6e-09 36.8 0.0 2.2 2 1 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain DDE_Tnp_ISL3 PF01610.17 AHV91592.1 - 1.2e-64 218.3 0.8 2.1e-64 217.5 0.2 1.6 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV91592.1 - 1.5e-11 43.5 0.1 3.6e-11 42.3 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV91592.1 - 5.2e-09 36.6 11.2 1.1e-08 35.6 11.2 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV91592.1 - 0.0022 18.0 0.1 0.0065 16.5 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain SLT_L PF14718.6 AHV91592.1 - 0.016 15.3 1.5 0.016 15.3 1.5 1.8 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain NOB1_Zn_bind PF08772.11 AHV91592.1 - 0.017 15.2 0.2 1.2 9.3 0.0 2.5 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-IS66 PF13005.7 AHV91592.1 - 8.2 6.9 9.6 3.6 8.1 6.6 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Ribosomal_L6 PF00347.23 AHV91593.1 - 3.3e-38 130.2 2.2 3.7e-18 66.0 0.2 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 rve_3 PF13683.6 AHV91594.1 - 4e-26 90.6 0.1 4.7e-26 90.3 0.1 1.1 1 0 0 1 1 1 1 Integrase core domain rve_2 PF13333.6 AHV91594.1 - 5.8e-08 32.8 0.0 7.4e-08 32.5 0.0 1.1 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AHV91594.1 - 0.003 17.8 0.0 0.0035 17.6 0.0 1.1 1 0 0 1 1 1 1 DDE domain GGDEF PF00990.21 AHV91595.1 - 1.8e-44 151.3 0.1 3.6e-44 150.3 0.1 1.6 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain PAS_4 PF08448.10 AHV91595.1 - 1.7e-27 95.8 0.2 8.1e-14 51.8 0.0 3.4 3 1 0 3 3 3 2 PAS fold PAS_9 PF13426.7 AHV91595.1 - 5.2e-24 84.5 0.0 8.4e-14 51.7 0.0 2.7 3 0 0 3 3 3 2 PAS domain PAS PF00989.25 AHV91595.1 - 1.2e-22 80.0 0.0 2.2e-14 53.4 0.0 2.7 2 0 0 2 2 2 2 PAS fold EAL PF00563.20 AHV91595.1 - 2e-13 50.4 0.1 1e-12 48.1 0.0 2.2 2 0 0 2 2 2 1 EAL domain PAS_3 PF08447.12 AHV91595.1 - 5.6e-11 42.6 0.0 1.4e-05 25.3 0.0 3.3 2 1 0 2 2 2 2 PAS fold PAS_8 PF13188.7 AHV91595.1 - 1e-09 38.2 0.2 4.8e-06 26.5 0.0 3.6 3 0 0 3 3 3 1 PAS domain GAF_2 PF13185.6 AHV91595.1 - 1.3e-05 25.6 0.1 7.8e-05 23.0 0.1 2.4 1 1 0 1 1 1 1 GAF domain PAS_7 PF12860.7 AHV91595.1 - 3.1e-05 24.1 0.4 0.0087 16.2 0.0 3.4 3 0 0 3 3 3 1 PAS fold GGDEF_2 PF17853.1 AHV91595.1 - 0.0022 18.2 0.2 0.011 16.0 0.2 2.3 1 0 0 1 1 1 1 GGDEF-like domain PAS_10 PF13596.6 AHV91595.1 - 0.0045 17.6 0.0 0.084 13.5 0.0 2.5 2 0 0 2 2 2 1 PAS domain PAS_12 PF18095.1 AHV91595.1 - 0.085 12.5 0.0 0.19 11.3 0.0 1.5 1 0 0 1 1 1 0 UPF0242 C-terminal PAS-like domain UDPG_MGDP_dh_N PF03721.14 AHV91596.1 - 5.2e-55 185.9 0.0 8.5e-55 185.2 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 AHV91596.1 - 9e-39 131.6 0.0 1.8e-38 130.6 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 AHV91596.1 - 4e-33 114.0 0.0 2.6e-32 111.4 0.0 2.3 2 1 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_binding_11 PF14833.6 AHV91596.1 - 0.0036 17.5 0.5 0.053 13.8 0.3 2.6 2 0 0 2 2 2 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase TrkA_N PF02254.18 AHV91597.1 - 3e-17 62.9 0.0 3.2e-17 62.8 0.0 1.0 1 0 0 1 1 1 1 TrkA-N domain NAD_binding_7 PF13241.6 AHV91597.1 - 1.2e-05 25.7 0.1 1.5e-05 25.4 0.1 1.1 1 0 0 1 1 1 1 Putative NAD(P)-binding Sacchrp_dh_NADP PF03435.18 AHV91597.1 - 1.5e-05 25.3 0.1 1.8e-05 25.0 0.1 1.1 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain ApbA PF02558.16 AHV91597.1 - 1.9e-05 24.4 0.0 2.3e-05 24.1 0.0 1.1 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA F420_oxidored PF03807.17 AHV91597.1 - 8.8e-05 23.0 0.0 0.00011 22.8 0.0 1.2 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent AlaDh_PNT_C PF01262.21 AHV91597.1 - 0.00017 20.9 0.3 0.0002 20.7 0.3 1.0 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_10 PF13460.6 AHV91597.1 - 0.00019 21.3 0.0 0.00022 21.2 0.0 1.0 1 0 0 1 1 1 1 NAD(P)H-binding 3HCDH_N PF02737.18 AHV91597.1 - 0.00059 19.8 0.2 0.00063 19.7 0.2 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox PF00070.27 AHV91597.1 - 0.0015 19.0 0.1 0.0022 18.5 0.1 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DUF1188 PF06690.11 AHV91597.1 - 0.0017 18.0 0.0 0.0017 18.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1188) Gp_dh_N PF00044.24 AHV91597.1 - 0.0027 18.0 0.1 0.0045 17.3 0.1 1.4 1 1 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Shikimate_DH PF01488.20 AHV91597.1 - 0.0028 17.7 0.0 0.003 17.6 0.0 1.1 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NAD_binding_2 PF03446.15 AHV91597.1 - 0.0065 16.7 0.0 0.0074 16.5 0.0 1.1 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase UDPG_MGDP_dh_N PF03721.14 AHV91597.1 - 0.0067 16.0 0.1 0.0073 15.9 0.1 1.2 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Ldh_1_N PF00056.23 AHV91597.1 - 0.0077 16.3 0.2 0.0095 16.0 0.2 1.1 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Methyltransf_25 PF13649.6 AHV91597.1 - 0.0093 16.6 0.0 0.0099 16.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Lycopene_cycl PF05834.12 AHV91597.1 - 0.013 14.5 0.1 0.014 14.5 0.1 1.1 1 0 0 1 1 1 0 Lycopene cyclase protein ThiF PF00899.21 AHV91597.1 - 0.014 14.8 0.2 0.035 13.4 0.0 1.6 2 0 0 2 2 2 0 ThiF family NAD_binding_9 PF13454.6 AHV91597.1 - 0.016 15.2 0.1 0.024 14.6 0.1 1.4 1 1 0 1 1 1 0 FAD-NAD(P)-binding DAO PF01266.24 AHV91597.1 - 0.019 14.6 0.1 0.028 14.0 0.1 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 AHV91597.1 - 0.031 13.5 0.1 0.031 13.5 0.1 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase 2-Hacid_dh_C PF02826.19 AHV91597.1 - 0.033 13.5 0.1 0.036 13.4 0.1 1.2 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Epimerase PF01370.21 AHV91597.1 - 0.05 13.0 0.0 0.056 12.9 0.0 1.0 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family NAD_binding_3 PF03447.16 AHV91597.1 - 0.057 14.1 0.2 0.069 13.8 0.2 1.1 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain XdhC_C PF13478.6 AHV91597.1 - 0.096 13.2 0.0 0.11 13.0 0.0 1.1 1 0 0 1 1 1 0 XdhC Rossmann domain 3Beta_HSD PF01073.19 AHV91597.1 - 0.11 11.4 0.1 0.11 11.4 0.1 1.0 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_8 PF13450.6 AHV91597.1 - 0.12 12.6 0.0 0.21 11.8 0.0 1.4 1 1 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Glyoxalase_3 PF13468.6 AHV91598.1 - 3.5e-31 108.7 0.2 5.5e-31 108.0 0.2 1.3 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_4 PF13669.6 AHV91598.1 - 0.0043 17.3 0.1 0.096 13.0 0.0 2.6 2 1 0 2 2 2 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SurA_N_3 PF13624.6 AHV91599.1 - 1.1e-48 165.1 1.8 1.7e-47 161.2 0.2 2.7 2 0 0 2 2 2 1 SurA N-terminal domain Rotamase_2 PF13145.6 AHV91599.1 - 1.3e-34 119.6 18.2 7e-25 88.2 2.9 4.7 4 0 0 4 4 4 3 PPIC-type PPIASE domain SurA_N_2 PF13623.6 AHV91599.1 - 1.4e-27 96.3 1.8 2.8e-26 92.1 0.1 2.7 2 0 0 2 2 2 1 SurA N-terminal domain Rotamase PF00639.21 AHV91599.1 - 2.1e-24 86.3 0.1 2.1e-24 86.3 0.1 2.7 3 0 0 3 3 3 1 PPIC-type PPIASE domain Rotamase_3 PF13616.6 AHV91599.1 - 5.3e-24 85.0 0.2 1.3e-23 83.8 0.2 1.7 1 0 0 1 1 1 1 PPIC-type PPIASE domain SurA_N PF09312.11 AHV91599.1 - 1.1e-08 35.1 0.9 3.7e-08 33.5 0.2 2.2 2 0 0 2 2 2 1 SurA N-terminal domain Trigger_C PF05698.14 AHV91599.1 - 0.46 10.5 12.7 1.4 8.9 0.0 4.8 5 2 0 5 5 5 0 Bacterial trigger factor protein (TF) C-terminus LysR_substrate PF03466.20 AHV91600.1 - 1.3e-37 129.2 0.6 1.7e-37 128.9 0.6 1.1 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 AHV91600.1 - 1.1e-16 60.5 1.2 1.8e-16 59.9 1.2 1.4 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_Tnp_ISL3 PF13542.6 AHV91600.1 - 0.00063 19.1 0.0 0.0014 18.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_Tnp_4 PF13613.6 AHV91600.1 - 0.013 15.2 0.0 0.03 14.1 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease HTH_28 PF13518.6 AHV91600.1 - 0.13 12.4 0.0 0.29 11.3 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain NAD_synthase PF02540.17 AHV91603.1 - 3.1e-53 180.4 0.0 4.2e-53 179.9 0.0 1.1 1 0 0 1 1 1 1 NAD synthase CN_hydrolase PF00795.22 AHV91603.1 - 4.5e-19 68.8 0.0 6.8e-19 68.2 0.0 1.2 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase QueC PF06508.13 AHV91603.1 - 0.00098 18.7 0.0 0.0015 18.1 0.0 1.3 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 AHV91603.1 - 0.0075 16.0 0.1 0.015 15.0 0.1 1.4 1 1 0 1 1 1 1 Asparagine synthase tRNA_Me_trans PF03054.16 AHV91603.1 - 0.23 10.2 0.2 0.37 9.5 0.2 1.2 1 0 0 1 1 1 0 tRNA methyl transferase RecO_N PF11967.8 AHV91604.1 - 2.5e-18 65.8 0.0 4e-18 65.2 0.0 1.3 1 0 0 1 1 1 1 Recombination protein O N terminal RecO_C PF02565.15 AHV91604.1 - 3.6e-15 56.1 2.1 6.6e-15 55.2 1.0 1.9 2 1 1 3 3 3 1 Recombination protein O C terminal YkuD PF03734.14 AHV91604.1 - 0.2 12.0 0.0 0.37 11.2 0.0 1.4 1 1 1 2 2 2 0 L,D-transpeptidase catalytic domain ABC2_membrane PF01061.24 AHV91605.1 - 6.9e-09 35.4 6.3 6.9e-09 35.4 6.3 1.8 2 0 0 2 2 2 1 ABC-2 type transporter DUF2975 PF11188.8 AHV91605.1 - 0.0024 17.8 0.3 0.0026 17.6 0.3 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF2975) ABC2_membrane_3 PF12698.7 AHV91605.1 - 0.011 14.8 7.0 0.013 14.7 7.0 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF3533 PF12051.8 AHV91605.1 - 0.041 12.8 3.3 0.097 11.6 2.7 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3533) ATP-synt_C PF00137.21 AHV91606.1 - 2.4e-10 40.6 13.2 3e-10 40.3 13.2 1.1 1 0 0 1 1 1 1 ATP synthase subunit C Romo1 PF10247.9 AHV91606.1 - 0.019 15.3 4.3 0.031 14.6 4.1 1.4 1 1 0 1 1 1 0 Reactive mitochondrial oxygen species modulator 1 ApbA PF02558.16 AHV91606.1 - 0.13 11.8 0.4 0.17 11.5 0.4 1.1 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA MS_channel PF00924.18 AHV91608.1 - 4.6e-44 150.4 0.1 1.4e-43 148.8 0.1 1.9 1 0 0 1 1 1 1 Mechanosensitive ion channel DUF3772 PF12607.8 AHV91608.1 - 7.6e-21 73.6 5.3 3.9e-20 71.4 5.3 2.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3772) PBP_like_2 PF12849.7 AHV91609.1 - 1.2e-22 81.0 0.5 1.4e-22 80.7 0.5 1.1 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_1 PF01547.25 AHV91609.1 - 9.2e-06 25.8 0.7 1e-05 25.6 0.7 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 AHV91609.1 - 0.00052 19.8 0.1 0.0006 19.6 0.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.7 AHV91609.1 - 0.021 13.9 0.0 0.025 13.7 0.0 1.2 1 0 0 1 1 1 0 PBP superfamily domain YceD PF02620.17 AHV91610.1 - 5.9e-19 68.4 0.6 7.7e-19 68.0 0.6 1.2 1 0 0 1 1 1 1 Large ribosomal RNA subunit accumulation protein YceD Glu_cys_ligase PF04262.14 AHV91611.1 - 5.2e-153 509.1 0.0 6.8e-153 508.7 0.0 1.1 1 0 0 1 1 1 1 Glutamate-cysteine ligase Rota_VP4_MID PF17477.2 AHV91611.1 - 0.079 12.3 0.0 0.14 11.5 0.0 1.3 1 0 0 1 1 1 0 Rotavirus VP4 membrane interaction domain Aldedh PF00171.22 AHV91613.1 - 1.1e-166 555.0 0.1 1.2e-166 554.8 0.1 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family Arginase PF00491.21 AHV91616.1 - 3.3e-75 253.2 0.3 3.8e-75 253.0 0.3 1.0 1 0 0 1 1 1 1 Arginase family Semialdhyde_dh PF01118.24 AHV91617.1 - 1.1e-37 129.1 0.0 1.1e-36 125.9 0.0 2.1 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 AHV91617.1 - 2.9e-17 63.3 0.0 4.3e-17 62.8 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain DapB_N PF01113.20 AHV91617.1 - 8.1e-05 22.7 0.0 0.00016 21.8 0.0 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus F420_oxidored PF03807.17 AHV91617.1 - 0.0014 19.2 0.0 0.0032 18.0 0.0 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_10 PF13460.6 AHV91617.1 - 0.018 14.9 0.0 0.039 13.9 0.0 1.6 1 0 0 1 1 1 0 NAD(P)H-binding GFO_IDH_MocA PF01408.22 AHV91617.1 - 0.024 15.4 0.0 0.044 14.6 0.0 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold CMD PF02627.20 AHV91618.1 - 2e-12 47.0 0.1 2.2e-12 46.8 0.1 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family Cytochrom_C PF00034.21 AHV91619.1 - 4.6e-14 53.3 0.2 5.6e-14 53.1 0.2 1.1 1 0 0 1 1 1 1 Cytochrome c Cytochrome_CBB3 PF13442.6 AHV91619.1 - 4.7e-10 39.6 0.4 7.4e-10 39.0 0.4 1.3 1 1 0 1 1 1 1 Cytochrome C oxidase, cbb3-type, subunit III DHOR PF06537.11 AHV91619.1 - 0.0035 16.0 0.0 0.0045 15.7 0.0 1.1 1 0 0 1 1 1 1 Di-haem oxidoreductase, putative peroxidase Cytochrom_C550 PF14495.6 AHV91619.1 - 0.016 14.9 0.0 0.63 9.7 0.0 2.1 2 0 0 2 2 2 0 Cytochrome c-550 domain DUF1924 PF09086.11 AHV91619.1 - 0.15 12.4 0.6 0.37 11.2 0.4 1.7 1 1 0 2 2 2 0 Domain of unknown function (DUF1924) DUF1464 PF07318.12 AHV91619.1 - 0.16 11.1 0.0 0.19 10.8 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1464) Pur_DNA_glyco PF02245.16 AHV91620.1 - 1.5e-24 86.4 0.0 1.7e-24 86.2 0.0 1.0 1 0 0 1 1 1 1 Methylpurine-DNA glycosylase (MPG) Rieske PF00355.26 AHV91621.1 - 4.4e-06 26.5 0.0 4.7e-06 26.4 0.0 1.2 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain FAD-oxidase_C PF02913.19 AHV91622.1 - 1.5e-12 47.7 0.0 1.5e-12 47.7 0.0 1.0 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain Cytokin-bind PF09265.10 AHV91622.1 - 0.082 12.3 0.0 0.082 12.3 0.0 1.0 1 0 0 1 1 1 0 Cytokinin dehydrogenase 1, FAD and cytokinin binding Abhydrolase_1 PF00561.20 AHV91623.1 - 5.5e-27 95.0 0.1 9.4e-27 94.3 0.1 1.4 1 1 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 AHV91623.1 - 1.1e-14 54.3 0.1 4.9e-14 52.2 0.1 1.7 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 AHV91623.1 - 3.1e-13 50.8 3.8 3.8e-13 50.6 3.8 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Ndr PF03096.14 AHV91623.1 - 0.0008 18.2 0.0 0.00098 17.9 0.0 1.1 1 0 0 1 1 1 1 Ndr family PAP2 PF01569.21 AHV91624.1 - 6.2e-20 71.4 3.3 6.2e-20 71.4 3.3 2.0 2 0 0 2 2 2 1 PAP2 superfamily PAP2_3 PF14378.6 AHV91624.1 - 1.8e-10 40.8 6.9 3.3e-10 40.0 6.9 1.6 1 1 0 1 1 1 1 PAP2 superfamily PAP2_C PF14360.6 AHV91624.1 - 8.6e-05 23.0 0.3 0.00021 21.8 0.3 1.6 1 0 0 1 1 1 1 PAP2 superfamily C-terminal Response_reg PF00072.24 AHV91625.1 - 3.4e-11 43.3 0.3 3.9e-11 43.1 0.3 1.1 1 0 0 1 1 1 1 Response regulator receiver domain NLBH PF05211.12 AHV91625.1 - 0.0044 16.6 0.0 0.005 16.4 0.0 1.1 1 0 0 1 1 1 1 Neuraminyllactose-binding hemagglutinin precursor (NLBH) ABC2_membrane_3 PF12698.7 AHV91625.1 - 0.019 14.1 0.0 0.02 14.0 0.0 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein OKR_DC_1_N PF03709.15 AHV91625.1 - 0.038 14.3 0.0 0.048 13.9 0.0 1.2 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain DUF2007 PF09413.10 AHV91625.1 - 0.048 13.8 0.1 2.6 8.3 0.0 2.1 1 1 1 2 2 2 0 Putative prokaryotic signal transducing protein FUSC PF04632.12 AHV91625.1 - 0.11 11.0 0.4 0.13 10.8 0.4 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein family PTS_IIB PF02302.17 AHV91625.1 - 0.12 13.0 0.0 0.18 12.5 0.0 1.2 1 0 0 1 1 1 0 PTS system, Lactose/Cellobiose specific IIB subunit Methyltransf_24 PF13578.6 AHV91625.1 - 0.15 13.1 0.0 0.19 12.8 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain TctA PF01970.16 AHV91626.1 - 7.1e-38 130.4 9.6 7.1e-38 130.4 9.6 1.3 2 0 0 2 2 2 1 Tripartite tricarboxylate transporter TctA family CPBP PF02517.16 AHV91627.1 - 4.6e-09 36.5 21.3 1.4e-07 31.7 20.9 2.6 1 1 1 2 2 2 1 CPBP intramembrane metalloprotease CTP_transf_1 PF01148.20 AHV91627.1 - 1.4 8.7 9.8 0.059 13.1 3.7 1.7 2 0 0 2 2 2 0 Cytidylyltransferase family FhuF_C PF11575.8 AHV91628.1 - 4.3e-05 23.3 5.3 0.00013 21.8 5.3 1.9 1 0 0 1 1 1 1 FhuF 2Fe-2S C-terminal domain Gp23 PF07068.11 AHV91628.1 - 0.18 10.6 0.0 0.24 10.1 0.0 1.1 1 0 0 1 1 1 0 Major capsid protein Gp23 NAPRTase PF04095.16 AHV91629.1 - 3.8e-72 242.8 0.0 4.7e-72 242.5 0.0 1.1 1 0 0 1 1 1 1 Nicotinate phosphoribosyltransferase (NAPRTase) family NAPRTase_N PF17767.1 AHV91629.1 - 1.1e-36 126.0 0.0 2.5e-36 124.8 0.0 1.6 2 0 0 2 2 2 1 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain MFS_1 PF07690.16 AHV91630.1 - 2.3e-35 122.2 62.8 8.1e-35 120.4 49.4 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 AHV91630.1 - 1.7e-23 83.2 17.2 1.7e-23 83.2 17.2 2.2 1 1 1 2 2 2 2 Sugar (and other) transporter LacY_symp PF01306.19 AHV91630.1 - 0.0028 16.5 1.4 0.0028 16.5 1.4 1.6 2 0 0 2 2 2 1 LacY proton/sugar symporter ThiC_Rad_SAM PF01964.18 AHV91631.1 - 7.4e-197 654.2 0.0 8.9e-197 653.9 0.0 1.1 1 0 0 1 1 1 1 Radical SAM ThiC family ThiC-associated PF13667.6 AHV91631.1 - 4e-32 109.9 0.1 8.7e-32 108.8 0.1 1.6 1 0 0 1 1 1 1 ThiC-associated domain GATase PF00117.28 AHV91632.1 - 1.9e-21 76.7 0.0 2.5e-21 76.3 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 AHV91632.1 - 1.6e-07 31.3 0.0 5e-07 29.7 0.0 1.8 1 1 0 1 1 1 1 Peptidase C26 GATase_3 PF07685.14 AHV91632.1 - 0.0015 18.1 0.0 0.0025 17.5 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Pyridox_ox_2 PF12900.7 AHV91632.1 - 0.051 13.6 0.0 0.086 12.8 0.0 1.4 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase NusG PF02357.19 AHV91633.1 - 1.7e-27 95.7 0.1 2.9e-27 95.0 0.1 1.4 1 0 0 1 1 1 1 Transcription termination factor nusG KOW PF00467.29 AHV91633.1 - 2.8e-07 30.3 0.5 2.8e-07 30.3 0.5 1.9 2 0 0 2 2 2 1 KOW motif Spt5-NGN PF03439.13 AHV91633.1 - 0.051 13.5 0.1 0.15 12.0 0.1 1.9 1 1 0 1 1 1 0 Early transcription elongation factor of RNA pol II, NGN section TauE PF01925.19 AHV91635.1 - 4.9e-33 114.7 41.5 6.4e-33 114.3 41.5 1.1 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF805 PF05656.14 AHV91635.1 - 9.1 6.7 13.4 28 5.2 5.8 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF805) Ldh_2 PF02615.14 AHV91636.1 - 1.2e-102 343.5 9.9 1.3e-102 343.4 9.9 1.0 1 0 0 1 1 1 1 Malate/L-lactate dehydrogenase MarR PF01047.22 AHV91637.1 - 6.2e-16 58.1 1.3 2.7e-15 56.0 0.1 2.5 2 2 1 3 3 3 1 MarR family MarR_2 PF12802.7 AHV91637.1 - 5.8e-14 51.7 2.4 1.2e-12 47.5 0.3 2.9 2 1 1 3 3 3 1 MarR family HTH_27 PF13463.6 AHV91637.1 - 5.5e-08 33.2 0.2 1.4e-07 31.9 0.1 1.7 2 0 0 2 2 1 1 Winged helix DNA-binding domain TrmB PF01978.19 AHV91637.1 - 1.9e-07 30.8 0.0 4.5e-07 29.7 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 AHV91637.1 - 4.2e-06 26.2 1.4 0.00021 20.8 0.0 2.8 2 1 0 2 2 2 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.20 AHV91637.1 - 0.0001 22.5 0.1 0.0022 18.3 0.0 2.6 2 1 1 3 3 3 1 Transcriptional regulator HTH_IclR PF09339.10 AHV91637.1 - 0.00014 21.6 1.8 0.0017 18.1 0.0 2.7 3 0 0 3 3 3 1 IclR helix-turn-helix domain Penicillinase_R PF03965.16 AHV91637.1 - 0.00022 21.5 0.0 0.00034 21.0 0.0 1.4 1 1 0 1 1 1 1 Penicillinase repressor HTH_AsnC-type PF13404.6 AHV91637.1 - 0.00054 19.7 1.6 0.09 12.6 0.0 2.9 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 AHV91637.1 - 0.0016 17.8 0.5 0.004 16.5 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 HTH_11 PF08279.12 AHV91637.1 - 0.0018 18.2 0.0 0.0051 16.7 0.0 1.7 1 0 0 1 1 1 1 HTH domain Fe_dep_repress PF01325.19 AHV91637.1 - 0.0019 18.3 0.0 0.0069 16.6 0.0 1.9 2 1 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain FeoC PF09012.10 AHV91637.1 - 0.0026 17.8 0.0 0.021 14.9 0.0 2.1 2 0 0 2 2 2 1 FeoC like transcriptional regulator HTH_5 PF01022.20 AHV91637.1 - 0.0049 16.7 0.0 0.041 13.7 0.0 2.3 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family LexA_DNA_bind PF01726.16 AHV91637.1 - 0.0062 16.3 1.1 0.036 13.8 0.0 2.6 3 0 0 3 3 3 1 LexA DNA binding domain HTH_34 PF13601.6 AHV91637.1 - 0.0062 16.7 0.0 0.039 14.1 0.0 2.0 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 AHV91637.1 - 0.013 15.5 2.2 0.018 15.0 0.7 2.2 2 2 0 2 2 2 0 Crp-like helix-turn-helix domain FtsK_gamma PF09397.10 AHV91637.1 - 0.013 15.3 0.2 1.4 8.8 0.0 2.3 2 0 0 2 2 2 0 Ftsk gamma domain PadR PF03551.14 AHV91637.1 - 0.016 15.2 0.0 0.047 13.6 0.0 1.8 2 0 0 2 2 2 0 Transcriptional regulator PadR-like family GntR PF00392.21 AHV91637.1 - 0.027 14.1 0.5 0.079 12.6 0.1 2.0 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_28 PF13518.6 AHV91637.1 - 0.03 14.4 0.4 0.097 12.8 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain PAX PF00292.18 AHV91637.1 - 0.048 13.6 0.0 0.056 13.4 0.0 1.3 1 0 0 1 1 1 0 'Paired box' domain HTH_23 PF13384.6 AHV91637.1 - 0.078 12.8 1.6 0.15 11.9 0.0 2.2 3 0 0 3 3 3 0 Homeodomain-like domain HTH_CodY PF08222.11 AHV91637.1 - 0.15 11.6 1.5 0.57 9.8 0.1 2.4 3 0 0 3 3 3 0 CodY helix-turn-helix domain Asp-Al_Ex PF06826.12 AHV91639.1 - 1.9e-56 190.5 41.3 4e-29 101.6 15.8 2.2 2 0 0 2 2 2 2 Predicted Permease Membrane Region TrkA_C PF02080.21 AHV91639.1 - 1e-14 54.1 0.7 1.6e-06 27.9 0.0 2.4 2 0 0 2 2 2 2 TrkA-C domain CP_ATPgrasp_2 PF14403.6 AHV91641.1 - 4.3e-133 443.9 0.0 5.1e-133 443.6 0.0 1.0 1 0 0 1 1 1 1 Circularly permuted ATP-grasp type 2 CP_ATPgrasp_1 PF04174.13 AHV91641.1 - 2e-122 408.4 0.0 2.6e-122 408.0 0.0 1.1 1 0 0 1 1 1 1 A circularly permuted ATPgrasp Peptidase_M24 PF00557.24 AHV91642.1 - 3.5e-48 164.1 0.1 4.1e-48 163.9 0.1 1.0 1 0 0 1 1 1 1 Metallopeptidase family M24 EAL PF00563.20 AHV91643.1 - 4.7e-76 255.4 2.0 1.3e-75 254.0 0.1 2.3 3 0 0 3 3 3 1 EAL domain MHYT PF03707.16 AHV91643.1 - 3.9e-51 171.1 31.7 2.4e-21 75.7 4.4 3.8 3 0 0 3 3 3 3 Bacterial signalling protein N terminal repeat GGDEF PF00990.21 AHV91643.1 - 1.3e-47 161.5 0.1 2e-47 160.9 0.1 1.3 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain GGDEF_2 PF17853.1 AHV91643.1 - 0.017 15.4 3.4 0.025 14.8 0.3 2.9 2 1 1 3 3 3 0 GGDEF-like domain Peptidase_M23 PF01551.22 AHV91644.1 - 2e-34 117.7 0.7 4.7e-34 116.5 0.7 1.7 1 0 0 1 1 1 1 Peptidase family M23 OapA PF04225.12 AHV91644.1 - 0.16 12.1 0.0 0.9 9.7 0.0 2.1 2 0 0 2 2 2 0 Opacity-associated protein A LysM-like domain rve_3 PF13683.6 AHV91645.1 - 4e-26 90.6 0.1 4.7e-26 90.3 0.1 1.1 1 0 0 1 1 1 1 Integrase core domain rve_2 PF13333.6 AHV91645.1 - 5.8e-08 32.8 0.0 7.4e-08 32.5 0.0 1.1 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AHV91645.1 - 0.003 17.8 0.0 0.0035 17.6 0.0 1.1 1 0 0 1 1 1 1 DDE domain His_Phos_1 PF00300.22 AHV91646.1 - 3.9e-36 124.6 0.5 3.1e-28 98.8 0.4 2.0 1 1 1 2 2 2 2 Histidine phosphatase superfamily (branch 1) MoaE PF02391.17 AHV91647.1 - 8.3e-35 119.5 0.1 9.9e-35 119.2 0.1 1.1 1 0 0 1 1 1 1 MoaE protein FecCD PF01032.18 AHV91648.1 - 6.3e-50 170.0 35.2 7.8e-50 169.6 35.2 1.1 1 0 0 1 1 1 1 FecCD transport family PapD_C PF02753.17 AHV91649.1 - 2.6e-13 50.1 0.0 4.7e-13 49.3 0.0 1.4 1 0 0 1 1 1 1 Pili assembly chaperone PapD, C-terminal domain PapD_N PF00345.20 AHV91649.1 - 0.003 17.5 0.0 0.0055 16.6 0.0 1.5 2 0 0 2 2 2 1 Pili and flagellar-assembly chaperone, PapD N-terminal domain TrkH PF02386.16 AHV91650.1 - 3.8e-61 207.1 11.2 3.4e-59 200.6 11.2 2.1 1 1 0 1 1 1 1 Cation transport protein Ribosomal_L11_N PF03946.14 AHV91651.1 - 1e-31 108.5 0.6 1.7e-31 107.8 0.6 1.3 1 0 0 1 1 1 1 Ribosomal protein L11, N-terminal domain Ribosomal_L11 PF00298.19 AHV91651.1 - 7.6e-26 90.4 1.3 1.2e-25 89.8 1.3 1.3 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Queuosine_synth PF02547.15 AHV91652.1 - 3.9e-12 45.9 0.0 4.6e-12 45.7 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein GST_N_3 PF13417.6 AHV91653.1 - 5.4e-12 46.0 0.0 8.8e-12 45.3 0.0 1.3 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N PF02798.20 AHV91653.1 - 3.1e-10 40.2 0.0 4.9e-10 39.6 0.0 1.3 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.6 AHV91653.1 - 2.7e-09 37.2 0.0 5.8e-09 36.1 0.0 1.6 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_C PF00043.25 AHV91653.1 - 1.7e-05 25.0 0.0 2.3e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C_2 PF13410.6 AHV91653.1 - 2.7e-05 24.1 0.2 2.7e-05 24.1 0.2 1.7 2 0 0 2 2 2 1 Glutathione S-transferase, C-terminal domain GST_C_3 PF14497.6 AHV91653.1 - 0.019 15.1 0.0 0.029 14.6 0.0 1.3 1 0 0 1 1 1 0 Glutathione S-transferase, C-terminal domain MR_MLE_C PF13378.6 AHV91654.1 - 1e-54 185.5 3.8 1.2e-54 185.2 3.8 1.0 1 0 0 1 1 1 1 Enolase C-terminal domain-like Glyco_hydro_31 PF01055.26 AHV91655.1 - 8.2e-71 239.5 0.0 9.8e-71 239.2 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 31 Gal_mutarotas_2 PF13802.6 AHV91655.1 - 0.0028 17.9 0.0 0.022 15.1 0.0 2.2 1 1 0 1 1 1 1 Galactose mutarotase-like rve PF00665.26 AHV91656.1 - 1.5e-23 83.3 0.4 3.8e-23 81.9 0.0 1.7 2 0 0 2 2 2 1 Integrase core domain rve_3 PF13683.6 AHV91656.1 - 7.8e-19 67.2 4.2 8.2e-19 67.2 3.1 1.6 2 0 0 2 2 2 1 Integrase core domain PG_binding_2 PF08823.11 AHV91656.1 - 0.028 14.7 0.0 0.049 14.0 0.0 1.4 1 0 0 1 1 1 0 Putative peptidoglycan binding domain BPD_transp_2 PF02653.16 AHV91657.1 - 0.00083 18.6 15.9 0.001 18.3 15.9 1.2 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component DUF5368 PF17336.2 AHV91657.1 - 0.051 13.8 6.4 0.054 13.7 4.8 1.8 1 1 1 2 2 2 0 Family of unknown function (DUF5368) 5TM-5TMR_LYT PF07694.12 AHV91657.1 - 0.062 12.8 12.0 0.082 12.4 12.0 1.1 1 0 0 1 1 1 0 5TMR of 5TMR-LYT DUF2254 PF10011.9 AHV91657.1 - 0.069 12.0 2.0 0.11 11.3 2.0 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2254) DUF485 PF04341.12 AHV91657.1 - 6.7 6.7 8.1 0.66 10.0 1.5 2.0 2 0 0 2 2 2 0 Protein of unknown function, DUF485 PAP_PilO PF06864.12 AHV91658.1 - 1.2e-09 37.5 10.1 5.3e-07 28.8 1.1 2.5 2 1 0 2 2 2 2 Pilin accessory protein (PilO) p6 PF17548.2 AHV91658.1 - 0.12 12.3 0.2 7.5 6.6 0.0 2.5 2 0 0 2 2 2 0 Histone-like Protein p6 DUF2065 PF09838.9 AHV91658.1 - 0.33 11.0 4.1 0.3 11.1 0.2 2.8 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2065) UPRTase PF14681.6 AHV91659.1 - 4.3e-62 209.3 0.1 4.9e-62 209.0 0.1 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.27 AHV91659.1 - 2e-13 50.2 0.7 3e-13 49.6 0.7 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.6 AHV91659.1 - 0.0053 16.8 0.0 0.008 16.2 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl synthetase-associated domain Cytochrom_C PF00034.21 AHV91660.1 - 1.2e-09 39.1 0.0 1.8e-09 38.6 0.0 1.3 1 0 0 1 1 1 1 Cytochrome c Cytochrome_CBB3 PF13442.6 AHV91660.1 - 6.4e-05 23.2 0.8 0.00013 22.2 0.8 1.5 1 1 0 1 1 1 1 Cytochrome C oxidase, cbb3-type, subunit III OPT PF03169.15 AHV91661.1 - 4.8e-42 144.4 20.2 5.3e-42 144.3 20.2 1.0 1 0 0 1 1 1 1 OPT oligopeptide transporter protein SBP_bac_5 PF00496.22 AHV91662.1 - 8.6e-53 179.6 0.1 1.4e-52 178.9 0.1 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle SBP_bac_1 PF01547.25 AHV91662.1 - 6.1 6.7 8.6 0.42 10.5 0.9 2.9 3 1 0 3 3 3 0 Bacterial extracellular solute-binding protein Pribosyltran PF00156.27 AHV91663.1 - 2.1e-23 82.6 0.0 2.5e-23 82.3 0.0 1.0 1 0 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.6 AHV91663.1 - 0.014 14.9 0.0 0.02 14.4 0.0 1.2 1 0 0 1 1 1 0 Phosphoribosyl transferase DUF1704 PF08014.11 AHV91663.1 - 0.24 10.4 0.0 0.32 10.0 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1704) SLT PF01464.20 AHV91664.1 - 2.7e-16 59.3 0.0 4.7e-16 58.5 0.0 1.3 1 0 0 1 1 1 1 Transglycosylase SLT domain RRM_9 PF18444.1 AHV91664.1 - 0.12 12.2 0.0 0.23 11.3 0.0 1.4 1 0 0 1 1 1 0 RNA recognition motif LysR_substrate PF03466.20 AHV91665.1 - 7.6e-38 130.0 3.4 1.3e-37 129.3 3.4 1.3 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 AHV91665.1 - 8.1e-17 60.9 1.2 8.1e-17 60.9 1.2 1.9 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family MarR_2 PF12802.7 AHV91665.1 - 0.074 13.0 0.7 0.24 11.3 0.7 1.9 1 0 0 1 1 1 0 MarR family HTH_31 PF13560.6 AHV91665.1 - 0.092 13.1 2.3 0.28 11.5 2.3 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain Pro_isomerase PF00160.21 AHV91666.1 - 6.4e-46 156.5 1.2 7.2e-46 156.3 1.2 1.0 1 0 0 1 1 1 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Disaggr_assoc PF08480.10 AHV91666.1 - 0.039 13.8 1.4 0.26 11.1 0.2 2.0 1 1 1 2 2 2 0 Disaggregatase related Glyco_hydro_25 PF01183.20 AHV91666.1 - 0.13 12.5 0.7 18 5.5 0.1 2.9 2 1 1 3 3 3 0 Glycosyl hydrolases family 25 Maf PF02545.14 AHV91667.1 - 3.4e-35 121.4 0.0 3.6e-35 121.3 0.0 1.0 1 0 0 1 1 1 1 Maf-like protein Plus-3 PF03126.18 AHV91667.1 - 0.0013 19.2 0.0 0.0018 18.8 0.0 1.2 1 0 0 1 1 1 1 Plus-3 domain BON PF04972.17 AHV91668.1 - 2.5e-18 66.1 8.5 3.4e-18 65.7 8.5 1.2 1 0 0 1 1 1 1 BON domain MF_alpha_N PF05436.11 AHV91668.1 - 0.00093 19.0 0.8 0.0019 18.1 0.8 1.5 1 1 0 1 1 1 1 Mating factor alpha precursor N-terminus DUF2613 PF11021.8 AHV91668.1 - 0.15 12.2 0.1 0.15 12.2 0.1 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF2613) Chorismate_synt PF01264.21 AHV91669.1 - 1.4e-132 441.4 0.0 1.5e-132 441.2 0.0 1.0 1 0 0 1 1 1 1 Chorismate synthase Acyl-CoA_dh_N PF02771.16 AHV91670.1 - 3.2e-06 27.8 0.5 1.2e-05 25.9 0.1 2.0 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 AHV91670.1 - 0.0018 18.5 0.0 0.0037 17.4 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Plug PF07715.15 AHV91671.1 - 3.6e-08 33.9 0.2 8.6e-08 32.7 0.2 1.7 1 0 0 1 1 1 1 TonB-dependent Receptor Plug Domain Peptidase_S41 PF03572.18 AHV91672.1 - 7.3e-52 175.3 0.0 1.1e-51 174.7 0.0 1.3 1 0 0 1 1 1 1 Peptidase family S41 PDZ_6 PF17820.1 AHV91672.1 - 1.8e-13 50.1 0.0 5.7e-13 48.5 0.0 2.0 1 0 0 1 1 1 1 PDZ domain PDZ_2 PF13180.6 AHV91672.1 - 6.5e-12 45.6 0.1 2.1e-11 44.0 0.1 2.0 1 0 0 1 1 1 1 PDZ domain PDZ PF00595.24 AHV91672.1 - 5.7e-11 42.6 0.2 1.2e-10 41.6 0.2 1.6 1 0 0 1 1 1 1 PDZ domain TSP_NTD PF17804.1 AHV91672.1 - 0.2 11.9 0.0 0.3 11.3 0.0 1.2 1 0 0 1 1 1 0 Tail specific protease N-terminal domain PPDK_N PF01326.19 AHV91673.1 - 4.3e-106 354.9 0.0 5.6e-106 354.5 0.0 1.2 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.18 AHV91673.1 - 5.5e-54 183.3 0.0 9e-54 182.6 0.0 1.3 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.23 AHV91673.1 - 8.1e-27 92.8 0.4 1.8e-26 91.6 0.4 1.6 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain Methyltransf_21 PF05050.12 AHV91675.1 - 0.0021 18.1 0.0 0.0039 17.2 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase FkbM domain Guanylate_cyc PF00211.20 AHV91675.1 - 0.14 11.8 0.0 0.22 11.1 0.0 1.2 1 0 0 1 1 1 0 Adenylate and Guanylate cyclase catalytic domain PPK2 PF03976.14 AHV91676.1 - 2e-05 24.2 0.1 2.1e-05 24.2 0.1 1.0 1 0 0 1 1 1 1 Polyphosphate kinase 2 (PPK2) Zeta_toxin PF06414.12 AHV91676.1 - 0.017 14.4 0.0 0.02 14.2 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin Acetyltransf_1 PF00583.25 AHV91677.1 - 3.3e-13 49.9 0.1 3.9e-13 49.7 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 AHV91677.1 - 5.2e-10 39.6 0.0 7.4e-10 39.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 AHV91677.1 - 1.8e-09 37.6 0.0 2.4e-09 37.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 AHV91677.1 - 3.4e-05 23.9 0.0 5.8e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_4 PF13420.7 AHV91677.1 - 0.00062 19.9 0.0 0.00084 19.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 AHV91677.1 - 0.0055 16.6 0.0 0.0097 15.9 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 AHV91677.1 - 0.0058 16.7 0.0 0.0086 16.2 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain HlyD_D23 PF16576.5 AHV91678.1 - 1.2e-17 63.8 7.2 6.6e-15 54.9 7.2 2.4 1 1 0 1 1 1 1 Barrel-sandwich domain of CusB or HlyD membrane-fusion HlyD_3 PF13437.6 AHV91678.1 - 1e-16 61.5 6.2 4.2e-15 56.3 0.1 3.4 3 1 1 4 4 4 2 HlyD family secretion protein Biotin_lipoyl_2 PF13533.6 AHV91678.1 - 6e-14 51.6 12.2 1.9e-12 46.8 0.5 3.3 3 0 0 3 3 3 2 Biotin-lipoyl like HlyD PF00529.20 AHV91678.1 - 6.6e-13 48.4 7.0 4.9e-12 45.6 7.0 2.2 1 1 0 1 1 1 1 HlyD membrane-fusion protein of T1SS Biotin_lipoyl PF00364.22 AHV91678.1 - 0.0002 21.1 0.2 0.7 9.8 0.1 2.4 2 0 0 2 2 2 2 Biotin-requiring enzyme OEP PF02321.18 AHV91678.1 - 4.6 7.0 17.3 77 3.0 14.4 2.8 2 1 0 2 2 2 0 Outer membrane efflux protein LPP PF04728.13 AHV91678.1 - 6.8 7.2 8.4 0.22 11.9 1.7 2.0 2 0 0 2 2 2 0 Lipoprotein leucine-zipper Carboxyl_trans PF01039.22 AHV91679.1 - 8.3e-16 57.7 0.7 1.6e-15 56.8 0.6 1.3 1 1 0 1 1 1 1 Carboxyl transferase domain zf-ACC PF17848.1 AHV91679.1 - 5.9e-13 48.6 3.5 9.6e-13 47.9 3.5 1.4 1 0 0 1 1 1 1 Acetyl-coA carboxylase zinc finger domain Tmemb_55A PF09788.9 AHV91679.1 - 0.039 13.0 0.1 0.057 12.5 0.1 1.2 1 0 0 1 1 1 0 Transmembrane protein 55A TF_Zn_Ribbon PF08271.12 AHV91679.1 - 0.057 12.9 0.6 0.11 12.0 0.6 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.11 AHV91679.1 - 0.16 11.9 1.0 0.29 11.1 1.0 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Ogr_Delta PF04606.12 AHV91679.1 - 0.24 11.4 1.4 1.5 8.9 0.1 2.4 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zinc_ribbon_4 PF13717.6 AHV91679.1 - 0.36 10.8 1.6 5.9 6.9 0.0 2.4 2 0 0 2 2 2 0 zinc-ribbon domain DUF1930 PF09122.10 AHV91680.1 - 0.054 13.5 0.1 0.069 13.1 0.1 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF1930) Sigma70_r4_2 PF08281.12 AHV91681.1 - 6.5e-18 64.1 0.9 5e-17 61.3 0.1 2.1 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r2 PF04542.14 AHV91681.1 - 1.9e-08 33.9 0.1 3.8e-08 33.0 0.1 1.5 1 0 0 1 1 1 1 Sigma-70 region 2 Sigma70_r4 PF04545.16 AHV91681.1 - 2.6e-08 33.2 0.0 6.7e-08 31.9 0.0 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_Mga PF08280.11 AHV91681.1 - 8e-05 22.6 0.0 0.00014 21.8 0.0 1.3 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_24 PF13412.6 AHV91681.1 - 0.0012 18.3 0.0 0.0027 17.2 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.6 AHV91681.1 - 0.0022 17.7 0.5 0.013 15.3 0.2 2.4 2 1 0 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.6 AHV91681.1 - 0.0035 17.4 0.3 0.013 15.6 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_10 PF04967.12 AHV91681.1 - 0.012 15.4 0.0 0.025 14.4 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain MarR_2 PF12802.7 AHV91681.1 - 0.034 14.0 0.2 0.15 12.0 0.1 2.2 2 1 0 2 2 2 0 MarR family HTH_Crp_2 PF13545.6 AHV91681.1 - 0.04 13.9 0.1 0.092 12.7 0.1 1.7 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Sigma70_r3 PF04539.16 AHV91681.1 - 0.041 14.0 0.0 0.1 12.7 0.0 1.6 1 0 0 1 1 1 0 Sigma-70 region 3 HTH_AsnC-type PF13404.6 AHV91681.1 - 0.049 13.5 0.0 0.15 11.9 0.0 1.8 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_IclR PF09339.10 AHV91681.1 - 0.063 13.1 1.6 0.068 13.0 0.0 2.0 2 0 0 2 2 2 0 IclR helix-turn-helix domain PPK2 PF03976.14 AHV91682.1 - 4e-117 389.6 7.9 6e-82 274.6 2.1 2.0 2 0 0 2 2 2 2 Polyphosphate kinase 2 (PPK2) DPRP PF04244.13 AHV91682.1 - 0.0035 17.2 0.5 0.012 15.5 0.1 1.9 2 0 0 2 2 2 1 Deoxyribodipyrimidine photo-lyase-related protein Ala_racemase_N PF01168.20 AHV91683.1 - 4.9e-09 36.2 0.0 5.6e-09 36.0 0.0 1.0 1 0 0 1 1 1 1 Alanine racemase, N-terminal domain rve_3 PF13683.6 AHV91684.1 - 1.8e-31 107.7 0.0 4.1e-31 106.6 0.0 1.6 2 0 0 2 2 2 1 Integrase core domain rve PF00665.26 AHV91684.1 - 5.6e-24 84.6 0.0 9.5e-24 83.9 0.0 1.3 1 0 0 1 1 1 1 Integrase core domain rve_2 PF13333.6 AHV91684.1 - 7e-07 29.3 0.0 1.2e-06 28.6 0.0 1.3 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AHV91684.1 - 0.00052 20.3 0.0 0.00079 19.7 0.0 1.4 1 0 0 1 1 1 1 DDE domain ABC_tran PF00005.27 AHV91685.1 - 1.5e-60 203.7 0.0 5.3e-30 104.7 0.0 2.2 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 AHV91685.1 - 5.9e-13 49.3 4.6 8e-05 22.6 0.0 4.1 2 2 0 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 AHV91685.1 - 3.3e-10 39.8 0.0 3.4e-05 23.4 0.0 2.4 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain oligo_HPY PF08352.12 AHV91685.1 - 2.9e-09 37.3 0.0 1.5e-05 25.4 0.0 2.4 2 0 0 2 2 2 2 Oligopeptide/dipeptide transporter, C-terminal region AAA_16 PF13191.6 AHV91685.1 - 5.2e-09 36.7 6.5 8.9e-05 22.9 1.3 2.6 2 1 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.6 AHV91685.1 - 1.1e-08 35.4 6.3 0.0046 17.2 0.9 4.2 3 1 0 3 3 3 2 AAA domain AAA_25 PF13481.6 AHV91685.1 - 1.3e-06 28.2 2.7 0.32 10.5 0.0 4.5 4 0 0 4 4 4 1 AAA domain TniB PF05621.11 AHV91685.1 - 8.6e-06 25.3 0.3 0.25 10.7 0.0 4.1 4 0 0 4 4 4 1 Bacterial TniB protein AAA_29 PF13555.6 AHV91685.1 - 9.8e-06 25.2 0.1 0.1 12.4 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_5 PF07728.14 AHV91685.1 - 1.2e-05 25.3 1.1 0.067 13.2 0.0 2.8 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_30 PF13604.6 AHV91685.1 - 9.3e-05 22.2 6.5 0.46 10.2 0.1 4.7 3 2 0 3 3 3 1 AAA domain AAA PF00004.29 AHV91685.1 - 0.0001 22.7 0.0 0.24 11.8 0.0 3.5 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.17 AHV91685.1 - 0.00018 21.3 0.9 0.14 11.9 0.0 3.4 4 0 0 4 4 4 1 IstB-like ATP binding protein AAA_7 PF12775.7 AHV91685.1 - 0.00022 20.8 0.0 0.18 11.3 0.0 2.3 2 0 0 2 2 2 2 P-loop containing dynein motor region RsgA_GTPase PF03193.16 AHV91685.1 - 0.00056 19.9 0.1 1.4 8.8 0.0 2.5 2 0 0 2 2 2 2 RsgA GTPase Mg_chelatase PF01078.21 AHV91685.1 - 0.0011 18.4 1.6 0.066 12.6 0.0 3.1 3 0 0 3 3 3 1 Magnesium chelatase, subunit ChlI DUF87 PF01935.17 AHV91685.1 - 0.0026 17.9 1.2 0.65 10.0 0.1 2.3 2 0 0 2 2 2 1 Helicase HerA, central domain NACHT PF05729.12 AHV91685.1 - 0.003 17.5 0.7 2.4 8.0 0.2 2.8 2 0 0 2 2 2 1 NACHT domain AAA_33 PF13671.6 AHV91685.1 - 0.0071 16.5 1.4 4.4 7.5 0.0 3.3 2 1 0 2 2 2 1 AAA domain PRK PF00485.18 AHV91685.1 - 0.0083 15.9 0.0 0.12 12.1 0.0 2.1 2 0 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family CbiA PF01656.23 AHV91685.1 - 0.0094 16.0 0.6 0.38 10.8 0.0 2.5 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_24 PF13479.6 AHV91685.1 - 0.011 15.4 0.1 4.8 6.8 0.0 2.2 2 0 0 2 2 2 0 AAA domain Pox_A32 PF04665.12 AHV91685.1 - 0.011 15.1 0.3 3.1 7.2 0.0 2.3 2 0 0 2 2 2 0 Poxvirus A32 protein ATPase PF06745.13 AHV91685.1 - 0.013 14.9 0.2 2.7 7.3 0.1 2.5 2 0 0 2 2 2 0 KaiC Sigma54_activat PF00158.26 AHV91685.1 - 0.014 15.1 2.8 0.46 10.2 0.0 3.1 4 0 0 4 4 3 0 Sigma-54 interaction domain T2SSE PF00437.20 AHV91685.1 - 0.016 14.3 0.1 0.51 9.3 0.0 2.3 2 0 0 2 2 2 0 Type II/IV secretion system protein NTPase_1 PF03266.15 AHV91685.1 - 0.023 14.6 0.1 2.4 8.1 0.0 2.4 2 0 0 2 2 2 0 NTPase SbcCD_C PF13558.6 AHV91685.1 - 0.023 14.9 0.6 29 5.0 0.1 4.0 2 2 0 2 2 2 0 Putative exonuclease SbcCD, C subunit TsaE PF02367.17 AHV91685.1 - 0.024 14.7 0.5 4 7.5 0.2 2.5 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_19 PF13245.6 AHV91685.1 - 0.026 14.9 0.0 0.74 10.1 0.0 2.7 2 1 0 2 2 2 0 AAA domain ATP-synt_ab PF00006.25 AHV91685.1 - 0.029 14.0 0.2 2.9 7.5 0.0 2.7 3 0 0 3 3 3 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_18 PF13238.6 AHV91685.1 - 0.054 14.1 0.1 2.9 8.4 0.0 2.9 3 0 0 3 3 3 0 AAA domain RNA_helicase PF00910.22 AHV91685.1 - 0.057 13.8 0.1 6.9 7.1 0.0 2.3 2 0 0 2 2 2 0 RNA helicase AIG1 PF04548.16 AHV91685.1 - 0.076 12.3 0.6 11 5.2 0.2 2.4 2 0 0 2 2 2 0 AIG1 family LPD22 PF18834.1 AHV91685.1 - 0.1 12.8 0.2 0.33 11.2 0.2 1.8 1 0 0 1 1 1 0 Large polyvalent protein associated domain 22 tRNA_lig_kinase PF08303.11 AHV91685.1 - 0.14 12.2 0.0 2.7 8.1 0.0 2.1 2 0 0 2 2 2 0 tRNA ligase kinase domain TrwB_AAD_bind PF10412.9 AHV91685.1 - 0.16 10.9 0.3 11 4.9 0.1 2.3 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain ABC_tran PF00005.27 AHV91686.1 - 3.1e-29 102.3 0.0 4e-29 101.9 0.0 1.1 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.8 AHV91686.1 - 2.7e-09 36.7 0.0 4.8e-09 35.9 0.0 1.4 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_21 PF13304.6 AHV91686.1 - 5.9e-06 26.3 0.3 0.00047 20.0 0.0 2.1 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 AHV91686.1 - 3.9e-05 23.3 0.0 8.1e-05 22.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 AHV91686.1 - 0.00014 22.5 0.1 0.00021 21.9 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 AHV91686.1 - 0.00032 20.5 0.2 0.007 16.1 0.2 2.1 1 1 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.23 AHV91686.1 - 0.0051 16.9 0.1 0.024 14.7 0.1 2.1 1 1 0 1 1 1 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 AHV91686.1 - 0.037 13.9 0.0 0.073 13.0 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_16 PF13191.6 AHV91686.1 - 0.1 13.0 0.9 0.42 11.0 0.9 2.0 1 1 0 1 1 1 0 AAA ATPase domain MobB PF03205.14 AHV91686.1 - 0.11 12.4 0.1 19 5.1 0.0 2.3 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B FeoB_N PF02421.18 AHV91686.1 - 0.11 12.0 0.0 0.21 11.1 0.0 1.4 1 0 0 1 1 1 0 Ferrous iron transport protein B MukB PF04310.12 AHV91686.1 - 0.14 11.9 0.0 0.2 11.5 0.0 1.2 1 0 0 1 1 1 0 MukB N-terminal AAA_15 PF13175.6 AHV91686.1 - 0.15 11.8 0.0 0.26 11.0 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain AAA_13 PF13166.6 AHV91686.1 - 0.32 9.6 0.0 0.37 9.4 0.0 1.1 1 0 0 1 1 1 0 AAA domain rve PF00665.26 AHV91687.1 - 9.9e-14 51.5 0.0 3.6e-12 46.5 0.0 2.1 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 AHV91687.1 - 9.7e-12 44.8 8.6 2e-11 43.8 8.6 1.5 1 0 0 1 1 1 1 HTH-like domain Rhomboid_SP PF12595.8 AHV91687.1 - 0.0032 16.9 0.3 1 8.7 0.0 2.3 1 1 0 2 2 2 2 Rhomboid serine protease Phasin_2 PF09361.10 AHV91688.1 - 0.0037 17.5 13.5 0.052 13.8 6.0 2.2 1 1 1 2 2 2 2 Phasin protein DUF2582 PF10771.9 AHV91688.1 - 0.036 14.2 2.4 0.31 11.2 0.0 2.6 2 1 1 3 3 3 0 Winged helix-turn-helix domain (DUF2582) E1-E2_ATPase PF00122.20 AHV91689.1 - 3.2e-59 199.5 0.3 8.9e-59 198.0 0.3 1.8 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.26 AHV91689.1 - 7.4e-46 157.1 6.3 7.4e-46 157.1 6.3 1.6 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 AHV91689.1 - 7.5e-07 29.1 0.3 4.5e-05 23.3 0.3 2.1 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 AHV91689.1 - 3.1e-06 27.5 0.0 7e-06 26.4 0.0 1.6 1 0 0 1 1 1 1 Heavy-metal-associated domain HAD PF12710.7 AHV91689.1 - 8.3e-06 26.3 2.9 1.3e-05 25.7 0.3 2.6 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 AHV91689.1 - 0.045 13.8 1.5 0.71 10.0 0.1 2.7 2 0 0 2 2 2 0 HAD-hyrolase-like HAD_2 PF13419.6 AHV91689.1 - 0.2 11.7 0.0 2.5 8.2 0.0 2.1 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Sulfatase PF00884.23 AHV91690.1 - 2.2e-49 168.5 0.0 2.7e-49 168.2 0.0 1.1 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 AHV91690.1 - 5.1e-08 32.9 0.2 0.0025 17.5 0.0 2.5 2 1 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF4976 PF16347.5 AHV91690.1 - 3.6e-07 30.4 0.0 7.3e-07 29.4 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4976) DUF229 PF02995.17 AHV91690.1 - 0.0049 15.5 0.0 0.0068 15.1 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF229) Sulfatase_C PF14707.6 AHV91690.1 - 0.058 14.1 0.0 0.13 13.0 0.0 1.5 1 0 0 1 1 1 0 C-terminal region of aryl-sulfatase Metalloenzyme PF01676.18 AHV91690.1 - 0.18 11.1 0.0 14 4.9 0.0 2.4 2 0 0 2 2 2 0 Metalloenzyme superfamily Phage_integrase PF00589.22 AHV91691.1 - 8.2e-09 35.5 0.0 9.4e-09 35.3 0.0 1.0 1 0 0 1 1 1 1 Phage integrase family SKI PF01202.22 AHV91692.1 - 1.4e-32 113.0 0.0 1.9e-32 112.5 0.0 1.2 1 0 0 1 1 1 1 Shikimate kinase HTH_3 PF01381.22 AHV91692.1 - 5e-11 42.5 0.2 1.8e-10 40.7 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.6 AHV91692.1 - 2.3e-08 34.3 2.1 2.3e-08 34.3 2.1 2.4 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_26 PF13443.6 AHV91692.1 - 1.7e-07 31.5 0.0 3.3e-07 30.6 0.0 1.5 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_19 PF12844.7 AHV91692.1 - 6.1e-07 29.4 0.0 1.3e-06 28.3 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain AAA_18 PF13238.6 AHV91692.1 - 0.00021 21.8 0.0 0.0026 18.3 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 AHV91692.1 - 0.00029 21.0 0.0 0.0013 19.0 0.0 2.1 1 1 0 1 1 1 1 AAA domain Cytidylate_kin2 PF13189.6 AHV91692.1 - 0.0011 19.2 0.0 0.016 15.3 0.0 2.4 2 0 0 2 2 2 1 Cytidylate kinase-like family ABC_tran PF00005.27 AHV91692.1 - 0.012 16.2 0.0 0.019 15.4 0.0 1.4 1 0 0 1 1 1 0 ABC transporter AAA PF00004.29 AHV91692.1 - 0.041 14.3 0.0 0.087 13.2 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 AHV91692.1 - 0.058 13.6 0.0 0.16 12.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain HTH_25 PF13413.6 AHV91692.1 - 0.058 13.3 1.4 0.063 13.1 0.1 1.7 2 0 0 2 2 1 0 Helix-turn-helix domain AAA_17 PF13207.6 AHV91692.1 - 0.064 13.7 0.0 0.14 12.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 AHV91692.1 - 0.075 13.4 0.1 0.21 12.0 0.1 1.9 1 1 1 2 2 2 0 AAA ATPase domain EutK_C PF16365.5 AHV91692.1 - 0.099 12.7 0.2 0.23 11.5 0.2 1.5 1 0 0 1 1 1 0 Ethanolamine utilization protein EutK C-terminus AAA_14 PF13173.6 AHV91692.1 - 0.18 11.8 0.0 0.29 11.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain GlutR_N PF05201.15 AHV91693.1 - 2.5e-46 157.1 0.0 4.5e-46 156.2 0.0 1.4 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, N-terminal domain Shikimate_DH PF01488.20 AHV91693.1 - 1e-43 148.7 0.0 1.8e-43 148.0 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GlutR_dimer PF00745.20 AHV91693.1 - 1.6e-28 99.0 0.3 5.6e-28 97.2 0.1 2.1 2 0 0 2 2 2 1 Glutamyl-tRNAGlu reductase, dimerisation domain F420_oxidored PF03807.17 AHV91693.1 - 0.0002 21.9 0.0 0.00071 20.1 0.0 2.0 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent OCD_Mu_crystall PF02423.15 AHV91693.1 - 0.036 13.0 0.2 0.071 12.0 0.2 1.5 1 0 0 1 1 1 0 Ornithine cyclodeaminase/mu-crystallin family LPD23 PF18838.1 AHV91693.1 - 0.08 12.7 0.5 0.19 11.5 0.5 1.6 1 0 0 1 1 1 0 Large polyvalent protein associated domain 23 NAD_binding_2 PF03446.15 AHV91693.1 - 0.14 12.3 0.9 1 9.5 0.1 2.5 2 1 1 3 3 3 0 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 AHV91694.1 - 1.3e-56 190.7 0.1 2.2e-56 190.0 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 AHV91694.1 - 0.00053 19.7 0.0 0.00066 19.4 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 AHV91694.1 - 0.045 13.9 0.1 0.085 13.0 0.1 1.5 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase DUF1328 PF07043.13 AHV91694.1 - 0.22 11.8 1.1 0.57 10.5 1.1 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1328) FimA PF16970.5 AHV91695.1 - 5.5e-33 114.2 2.0 7.8e-33 113.7 2.0 1.2 1 0 0 1 1 1 1 Type-1 fimbrial protein, A Fimbrial PF00419.20 AHV91695.1 - 2.4e-12 47.4 7.0 2.9e-12 47.1 7.0 1.1 1 0 0 1 1 1 1 Fimbrial protein DUF2574 PF10836.8 AHV91695.1 - 0.14 12.0 3.6 1 9.3 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2574) Y2_Tnp PF04986.13 AHV91695.1 - 0.17 11.9 0.0 0.2 11.7 0.0 1.1 1 0 0 1 1 1 0 Putative transposase EAL PF00563.20 AHV91696.1 - 4e-63 213.1 0.0 4.7e-63 212.9 0.0 1.0 1 0 0 1 1 1 1 EAL domain UTRA PF07702.13 AHV91697.1 - 6.9e-35 120.0 0.8 1e-34 119.4 0.4 1.4 2 0 0 2 2 2 1 UTRA domain GntR PF00392.21 AHV91697.1 - 2.2e-19 68.8 0.2 6.7e-19 67.3 0.1 1.9 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_DeoR PF08220.12 AHV91697.1 - 0.003 17.3 0.0 0.0084 15.8 0.0 1.8 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain MarR_2 PF12802.7 AHV91697.1 - 0.0058 16.5 1.5 0.13 12.1 0.1 2.7 3 0 0 3 3 3 1 MarR family HTH_Tnp_4 PF13613.6 AHV91697.1 - 0.012 15.3 0.0 0.024 14.4 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease HTH_41 PF14502.6 AHV91697.1 - 0.015 15.0 0.0 0.039 13.6 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain MarR PF01047.22 AHV91697.1 - 0.039 13.9 0.0 0.1 12.5 0.0 1.7 2 0 0 2 2 2 0 MarR family MazE_antitoxin PF04014.18 AHV91697.1 - 0.14 12.1 0.0 0.72 9.9 0.1 2.1 3 0 0 3 3 3 0 Antidote-toxin recognition MazE, bacterial antitoxin COX_ARM PF06481.14 AHV91698.1 - 6.3e-14 51.6 0.2 1.2e-13 50.7 0.2 1.5 1 0 0 1 1 1 1 COX Aromatic Rich Motif COX2 PF00116.20 AHV91698.1 - 3.4e-05 23.7 0.1 0.00016 21.6 0.0 2.0 1 1 1 2 2 2 1 Cytochrome C oxidase subunit II, periplasmic domain COX2_TM PF02790.15 AHV91698.1 - 0.0026 17.9 4.9 0.0051 16.9 4.9 1.4 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, transmembrane domain DUF1461 PF07314.11 AHV91698.1 - 0.019 14.9 1.0 0.031 14.2 1.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1461) E1-E2_ATPase PF00122.20 AHV91698.1 - 0.02 14.4 0.8 0.029 13.9 0.8 1.2 1 0 0 1 1 1 0 E1-E2 ATPase DUF4079 PF13301.6 AHV91698.1 - 0.024 14.8 0.1 0.033 14.3 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4079) DUF5367 PF17329.2 AHV91698.1 - 0.039 14.1 1.1 5.4 7.2 0.2 2.4 2 0 0 2 2 2 0 Family of unknown function (DUF5367) Sulf_transp PF04143.14 AHV91698.1 - 0.056 13.0 0.5 0.077 12.5 0.5 1.2 1 0 0 1 1 1 0 Sulphur transport TspO_MBR PF03073.15 AHV91698.1 - 0.48 10.5 7.1 0.36 10.9 5.2 1.8 2 1 0 2 2 2 0 TspO/MBR family 2-Hacid_dh_C PF02826.19 AHV91699.1 - 6.2e-35 120.2 0.1 7.4e-35 119.9 0.1 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LysR_substrate PF03466.20 AHV91700.1 - 1.1e-31 109.9 1.4 1.6e-31 109.3 1.4 1.2 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 AHV91700.1 - 3.1e-22 78.3 0.2 6e-22 77.4 0.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family TPP_enzyme_C PF02775.21 AHV91701.1 - 1.2e-36 125.8 0.0 1.8e-35 122.0 0.0 2.3 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_N PF02776.18 AHV91701.1 - 2.3e-30 105.5 0.0 2.4e-25 89.1 0.0 2.7 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_M PF00205.22 AHV91701.1 - 5.2e-29 100.7 0.0 2.3e-28 98.7 0.0 2.1 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain HpcH_HpaI PF03328.14 AHV91701.1 - 9.6e-27 93.5 0.1 1.5e-26 92.9 0.1 1.3 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family XFP_N PF09364.10 AHV91701.1 - 0.17 10.6 0.0 0.3 9.8 0.0 1.3 1 0 0 1 1 1 0 XFP N-terminal domain MmgE_PrpD PF03972.14 AHV91702.1 - 3.2e-97 325.9 8.7 3.6e-97 325.7 8.7 1.0 1 0 0 1 1 1 1 MmgE/PrpD family NADH-u_ox-rdase PF10785.9 AHV91702.1 - 0.13 13.0 0.4 0.32 11.7 0.4 1.8 1 1 0 1 1 1 0 NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit SDH_alpha PF03313.15 AHV91702.1 - 0.34 10.5 5.0 0.45 10.1 4.1 1.5 1 1 0 1 1 1 0 Serine dehydratase alpha chain FUR PF01475.19 AHV91703.1 - 1.9e-16 60.3 1.0 1.9e-16 60.3 0.0 1.5 2 0 0 2 2 2 1 Ferric uptake regulator family HTH_5 PF01022.20 AHV91703.1 - 0.0039 17.0 0.0 0.088 12.7 0.0 2.7 2 1 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 AHV91703.1 - 0.038 13.6 0.1 4.1 7.0 0.0 3.2 3 1 1 4 4 4 0 Winged helix-turn-helix DNA-binding PadR PF03551.14 AHV91703.1 - 0.11 12.5 0.0 0.17 11.8 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family Nudix_N_2 PF14803.6 AHV91703.1 - 0.11 12.4 2.9 2.4 8.1 0.0 2.5 2 0 0 2 2 2 0 Nudix N-terminal NinF PF05810.12 AHV91703.1 - 0.78 9.7 3.1 19 5.2 0.2 3.0 3 0 0 3 3 3 0 NinF protein NMT1 PF09084.11 AHV91704.1 - 3.8e-20 72.8 0.2 5.4e-20 72.3 0.2 1.2 1 0 0 1 1 1 1 NMT1/THI5 like NMT1_2 PF13379.6 AHV91704.1 - 3.4e-16 59.7 1.6 4.8e-16 59.2 1.6 1.1 1 0 0 1 1 1 1 NMT1-like family Phosphonate-bd PF12974.7 AHV91704.1 - 0.00017 21.3 0.4 0.00053 19.7 0.4 1.7 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein SBP_bac_3 PF00497.20 AHV91704.1 - 0.00032 20.2 0.0 0.00065 19.2 0.0 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Aldo_ket_red PF00248.21 AHV91706.1 - 1.6e-63 214.6 0.0 1.8e-63 214.5 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family GATase PF00117.28 AHV91707.1 - 6.4e-54 182.6 0.0 7.1e-54 182.5 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 AHV91707.1 - 1.8e-11 44.2 0.1 1.1e-10 41.6 0.1 1.9 1 1 0 1 1 1 1 Peptidase C26 SBP_bac_6 PF13343.6 AHV91710.1 - 1.1e-08 34.8 0.0 1.1e-08 34.8 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 AHV91710.1 - 1.7e-06 27.9 0.0 2.1e-06 27.6 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 AHV91710.1 - 5e-06 26.5 0.0 6e-06 26.3 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 AHV91710.1 - 0.0012 18.9 0.1 0.0016 18.5 0.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein HTH_Tnp_1 PF01527.20 AHV91711.1 - 5.8e-20 71.4 0.0 8.8e-20 70.8 0.0 1.3 1 0 0 1 1 1 1 Transposase HTH_23 PF13384.6 AHV91711.1 - 7e-07 28.9 0.2 2.7e-06 27.0 0.0 1.9 2 1 1 3 3 3 1 Homeodomain-like domain HTH_28 PF13518.6 AHV91711.1 - 1.3e-06 28.4 0.0 2.4e-06 27.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_1_2 PF13022.6 AHV91711.1 - 6.2e-05 23.1 1.0 0.00097 19.3 0.0 2.2 2 1 0 2 2 2 1 Helix-turn-helix of insertion element transposase HTH_29 PF13551.6 AHV91711.1 - 0.00013 21.9 0.1 0.00047 20.1 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn helix HTH_7 PF02796.15 AHV91711.1 - 0.00021 21.3 0.1 0.00045 20.2 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain of resolvase HTH_24 PF13412.6 AHV91711.1 - 0.00054 19.5 0.4 0.0036 16.8 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 AHV91711.1 - 0.0046 16.8 0.0 0.0092 15.9 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 AHV91711.1 - 0.008 16.0 0.0 0.012 15.4 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_17 PF12728.7 AHV91711.1 - 0.0096 16.1 0.0 0.013 15.6 0.0 1.5 1 1 0 1 1 1 1 Helix-turn-helix domain Terminase_5 PF06056.12 AHV91711.1 - 0.012 15.5 0.0 0.019 14.9 0.0 1.4 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) HTH_26 PF13443.6 AHV91711.1 - 0.012 16.0 0.0 0.039 14.4 0.0 1.8 1 1 1 2 2 2 0 Cro/C1-type HTH DNA-binding domain Wtap PF17098.5 AHV91711.1 - 0.02 14.8 0.2 0.02 14.8 0.2 1.2 1 0 0 1 1 1 0 WTAP/Mum2p family HTH_22 PF13309.6 AHV91711.1 - 0.046 13.8 0.1 0.27 11.4 0.0 2.1 2 0 0 2 2 2 0 HTH domain CENP-B_N PF04218.13 AHV91711.1 - 0.046 13.3 0.0 0.073 12.7 0.0 1.4 1 0 0 1 1 1 0 CENP-B N-terminal DNA-binding domain DprA_WH PF17782.1 AHV91713.1 - 3.8e-11 42.9 1.0 4.1e-11 42.8 1.0 1.0 1 0 0 1 1 1 1 DprA winged helix domain HTH_Crp_2 PF13545.6 AHV91713.1 - 0.015 15.3 0.0 0.015 15.2 0.0 1.1 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain MarR PF01047.22 AHV91713.1 - 0.016 15.1 0.0 0.018 15.0 0.0 1.1 1 0 0 1 1 1 0 MarR family DUF1488 PF07369.11 AHV91714.1 - 0.00082 19.3 0.0 0.00094 19.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1488) Peripla_BP_6 PF13458.6 AHV91715.1 - 1.3e-21 77.7 0.8 1.4e-21 77.5 0.8 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 AHV91715.1 - 8.1e-08 31.6 0.2 9.1e-08 31.5 0.2 1.1 1 0 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.28 AHV91715.1 - 0.00042 19.5 0.1 0.00051 19.3 0.1 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region Sigma70_r4_2 PF08281.12 AHV91716.1 - 5.5e-17 61.2 1.0 5.5e-17 61.2 1.0 1.8 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r2 PF04542.14 AHV91716.1 - 2.1e-15 56.2 1.2 3.6e-15 55.5 1.2 1.4 1 0 0 1 1 1 1 Sigma-70 region 2 Sigma70_r4 PF04545.16 AHV91716.1 - 5.2e-07 29.1 0.6 1.2e-06 27.9 0.6 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.6 AHV91716.1 - 9.5e-06 25.3 0.4 4.6e-05 23.1 0.3 2.2 2 0 0 2 2 2 1 Homeodomain-like domain HTH_11 PF08279.12 AHV91716.1 - 8.9e-05 22.4 0.2 0.00026 20.9 0.2 1.7 1 0 0 1 1 1 1 HTH domain Sigma70_ECF PF07638.11 AHV91716.1 - 0.00026 21.0 1.4 0.00048 20.1 1.4 1.4 1 1 0 1 1 1 1 ECF sigma factor HTH_29 PF13551.6 AHV91716.1 - 0.00057 19.9 0.5 0.0015 18.5 0.1 2.0 2 0 0 2 2 2 1 Winged helix-turn helix HTH_28 PF13518.6 AHV91716.1 - 0.002 18.2 0.1 0.0063 16.6 0.1 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain GerE PF00196.19 AHV91716.1 - 0.0024 17.4 0.0 0.0041 16.6 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_24 PF13412.6 AHV91716.1 - 0.0039 16.7 0.1 0.008 15.7 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_40 PF14493.6 AHV91716.1 - 0.0045 17.4 0.9 0.012 16.1 0.7 1.8 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 AHV91716.1 - 0.017 14.6 0.2 0.036 13.5 0.2 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_38 PF13936.6 AHV91716.1 - 0.021 14.6 0.1 0.055 13.2 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_36 PF13730.6 AHV91716.1 - 0.029 14.3 0.0 0.056 13.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_17 PF12728.7 AHV91716.1 - 0.041 14.1 0.1 0.83 9.9 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_10 PF04967.12 AHV91716.1 - 0.084 12.7 0.1 0.22 11.3 0.1 1.7 1 0 0 1 1 1 0 HTH DNA binding domain Proton_antipo_M PF00361.20 AHV91717.1 - 5e-77 259.0 23.0 9.4e-77 258.1 23.0 1.5 1 0 0 1 1 1 1 Proton-conducting membrane transporter DUF2897 PF11446.8 AHV91717.1 - 0.16 11.9 0.1 0.16 11.9 0.1 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF2897) DUF2109 PF09882.9 AHV91717.1 - 6.6 6.8 12.8 0.31 11.1 1.4 3.8 3 0 0 3 3 3 0 Predicted membrane protein (DUF2109) PadR PF03551.14 AHV91718.1 - 2.6e-15 56.1 0.2 4.3e-15 55.4 0.2 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family TrmB PF01978.19 AHV91718.1 - 0.019 14.8 0.2 0.18 11.7 0.2 2.3 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB RTP PF02334.16 AHV91718.1 - 0.028 15.1 0.0 0.054 14.1 0.0 1.5 1 1 0 1 1 1 0 Replication terminator protein Creb_binding PF09030.10 AHV91718.1 - 0.11 13.2 0.1 0.17 12.6 0.1 1.3 1 0 0 1 1 1 0 Creb binding ResB PF05140.14 AHV91719.1 - 2e-85 287.5 0.0 2.4e-85 287.1 0.0 1.0 1 0 0 1 1 1 1 ResB-like family LysR_substrate PF03466.20 AHV91720.1 - 2.3e-26 92.5 0.5 2.3e-26 92.5 0.5 2.2 2 1 0 2 2 2 1 LysR substrate binding domain HTH_1 PF00126.27 AHV91720.1 - 2.6e-19 68.9 2.5 4.9e-19 68.0 2.5 1.5 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family MarR_2 PF12802.7 AHV91720.1 - 0.0064 16.3 0.1 0.019 14.8 0.1 1.8 1 0 0 1 1 1 1 MarR family rve_3 PF13683.6 AHV91721.1 - 1.2e-31 108.3 0.1 6.1e-31 106.0 0.0 2.2 2 0 0 2 2 2 1 Integrase core domain rve PF00665.26 AHV91721.1 - 7.4e-25 87.5 0.0 1.6e-23 83.2 0.0 2.2 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 AHV91721.1 - 2.4e-11 43.6 8.6 4.8e-11 42.6 8.6 1.5 1 0 0 1 1 1 1 HTH-like domain rve_2 PF13333.6 AHV91721.1 - 7.6e-07 29.2 0.0 1.7e-06 28.1 0.0 1.6 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AHV91721.1 - 0.00055 20.2 0.0 0.0013 18.9 0.0 1.6 1 1 1 2 2 2 1 DDE domain DUF1780 PF08682.10 AHV91721.1 - 0.025 14.3 1.3 0.22 11.2 0.4 2.2 2 0 0 2 2 2 0 Putative endonuclease, protein of unknown function (DUF1780) Rhomboid_SP PF12595.8 AHV91721.1 - 0.03 13.7 0.4 8 5.8 0.0 2.6 1 1 0 2 2 2 0 Rhomboid serine protease Complex1_51K PF01512.17 AHV91722.1 - 1.3e-46 158.3 0.0 1.9e-46 157.7 0.0 1.3 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit NMT1_3 PF16868.5 AHV91723.1 - 3.6e-87 292.5 2.1 4.2e-87 292.2 2.1 1.0 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.11 AHV91723.1 - 2.1e-07 31.1 0.0 4.2e-07 30.1 0.0 1.5 1 0 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.7 AHV91723.1 - 8.2e-07 28.9 0.4 0.0002 21.1 0.1 2.4 1 1 0 2 2 2 2 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1_2 PF13379.6 AHV91723.1 - 0.0047 16.7 0.1 0.008 15.9 0.1 1.4 1 0 0 1 1 1 1 NMT1-like family Phage_integrase PF00589.22 AHV91725.1 - 2.8e-37 128.1 0.0 4.8e-37 127.4 0.0 1.4 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.17 AHV91725.1 - 5.7e-19 68.2 2.5 1.1e-18 67.3 0.3 2.4 3 0 0 3 3 3 1 Phage integrase, N-terminal SAM-like domain DUF3435 PF11917.8 AHV91725.1 - 0.011 14.7 0.1 0.017 14.1 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3435) HTH_38 PF13936.6 AHV91725.1 - 0.014 15.1 0.4 0.035 13.9 0.4 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Phage_int_SAM_4 PF13495.6 AHV91725.1 - 0.022 15.2 0.0 0.043 14.3 0.0 1.4 1 0 0 1 1 1 0 Phage integrase, N-terminal SAM-like domain Integrase_1 PF12835.7 AHV91725.1 - 0.057 13.5 0.0 0.13 12.3 0.0 1.6 1 1 0 1 1 1 0 Integrase MFS_1 PF07690.16 AHV91726.1 - 1.3e-36 126.3 60.5 8.3e-36 123.6 46.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_4 PF06779.14 AHV91726.1 - 8.9e-06 25.2 41.5 1.2e-05 24.9 41.5 1.1 1 0 0 1 1 1 1 Uncharacterised MFS-type transporter YbfB ABC_tran PF00005.27 AHV91727.1 - 6.4e-30 104.5 0.0 8.7e-30 104.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 AHV91727.1 - 8.6e-17 61.4 0.5 1.6e-16 60.5 0.5 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region SMC_N PF02463.19 AHV91727.1 - 0.00051 19.5 0.0 0.001 18.6 0.0 1.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 AHV91727.1 - 0.00063 19.6 0.1 0.047 13.5 0.0 2.1 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 AHV91727.1 - 0.0019 18.5 0.1 0.013 15.8 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 AHV91727.1 - 0.0027 18.1 0.5 0.02 15.3 0.5 2.3 1 1 0 1 1 1 1 AAA ATPase domain PRK PF00485.18 AHV91727.1 - 0.032 14.0 0.0 0.046 13.4 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA PF00004.29 AHV91727.1 - 0.04 14.3 0.0 0.17 12.3 0.0 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.21 AHV91727.1 - 0.041 13.3 0.0 0.079 12.3 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_25 PF13481.6 AHV91727.1 - 0.061 12.9 0.3 4.8 6.7 0.1 2.3 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 AHV91727.1 - 0.14 11.9 0.1 0.23 11.2 0.1 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain ATPase PF06745.13 AHV91727.1 - 0.3 10.4 1.9 3.6 6.9 0.3 2.1 2 0 0 2 2 2 0 KaiC NB-ARC PF00931.22 AHV91727.1 - 0.39 9.9 0.6 0.6 9.3 0.6 1.2 1 0 0 1 1 1 0 NB-ARC domain PHB_acc PF05233.13 AHV91728.1 - 1.6e-33 114.4 21.6 8.6e-19 67.3 4.0 2.7 2 0 0 2 2 2 2 PHB accumulation regulatory domain PHB_acc_N PF07879.11 AHV91728.1 - 7.6e-31 106.0 0.2 2.7e-30 104.2 0.1 1.9 2 0 0 2 2 2 1 PHB/PHA accumulation regulator DNA-binding domain TetR_C_8 PF14278.6 AHV91728.1 - 0.004 17.2 0.9 0.4 10.8 0.0 2.2 1 1 1 2 2 2 2 Transcriptional regulator C-terminal region Phasin_2 PF09361.10 AHV91728.1 - 0.039 14.2 2.3 0.16 12.3 2.3 2.1 1 1 0 1 1 1 0 Phasin protein DUF1824 PF08854.10 AHV91728.1 - 0.065 13.2 0.1 0.11 12.4 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1824) CBM46 PF18448.1 AHV91728.1 - 0.11 12.8 0.1 0.19 12.1 0.1 1.3 1 0 0 1 1 1 0 Carbohydrate binding domain DctM PF06808.12 AHV91729.1 - 1.4e-116 389.8 53.3 1.6e-116 389.5 53.3 1.0 1 0 0 1 1 1 1 Tripartite ATP-independent periplasmic transporter, DctM component CitMHS PF03600.16 AHV91729.1 - 2.1e-05 23.9 62.1 0.0003 20.1 31.5 2.2 1 1 1 2 2 2 1 Citrate transporter Tom6 PF17112.5 AHV91729.1 - 1.9 8.1 5.7 3.5 7.2 1.8 2.7 2 0 0 2 2 2 0 Mitochondrial import receptor subunit Tom6, fungal DNA_topoisoIV PF00521.20 AHV91730.1 - 1.6e-130 435.8 0.0 2.1e-130 435.5 0.0 1.1 1 0 0 1 1 1 1 DNA gyrase/topoisomerase IV, subunit A DNA_gyraseA_C PF03989.13 AHV91730.1 - 2.2e-11 43.0 0.2 0.0044 16.5 0.0 3.6 3 0 0 3 3 3 3 DNA gyrase C-terminal domain, beta-propeller OB_aCoA_assoc PF01796.17 AHV91730.1 - 0.0092 16.0 0.3 0.17 11.9 0.1 2.8 2 0 0 2 2 2 1 DUF35 OB-fold domain, acyl-CoA-associated PgdA_N PF18627.1 AHV91730.1 - 0.11 12.1 0.3 0.18 11.4 0.3 1.2 1 0 0 1 1 1 0 Peptidoglycan GlcNAc deacetylase N-terminal domain ANTAR PF03861.14 AHV91730.1 - 0.11 12.3 5.4 2.3 8.1 0.3 4.1 5 0 0 5 5 5 0 ANTAR domain AMP-binding PF00501.28 AHV91731.1 - 4.5e-44 150.7 0.0 5.4e-44 150.5 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme Phasin_2 PF09361.10 AHV91732.1 - 1e-21 77.1 3.4 1e-21 77.1 3.4 2.9 1 1 1 2 2 2 2 Phasin protein Virul_fac_BrkB PF03631.15 AHV91732.1 - 0.089 12.4 0.4 0.17 11.4 0.1 1.5 1 1 1 2 2 2 0 Virulence factor BrkB YkyA PF10368.9 AHV91732.1 - 0.84 9.3 8.4 0.82 9.3 0.5 2.6 2 1 1 3 3 3 0 Putative cell-wall binding lipoprotein ISG65-75 PF11727.8 AHV91732.1 - 5.5 6.1 14.3 2.1 7.5 10.5 1.9 1 1 1 2 2 2 0 Invariant surface glycoprotein Acetyltransf_1 PF00583.25 AHV91733.1 - 1.2e-06 28.8 0.0 1.4e-06 28.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 AHV91733.1 - 3.9e-06 26.8 0.0 5.2e-06 26.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 AHV91733.1 - 0.00033 21.0 0.0 0.00045 20.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 AHV91733.1 - 0.052 13.6 0.0 0.13 12.4 0.0 1.8 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain FR47 PF08445.10 AHV91733.1 - 0.13 12.2 0.0 0.29 11.1 0.0 1.5 1 0 0 1 1 1 0 FR47-like protein Acetyltransf_CG PF14542.6 AHV91733.1 - 0.15 12.2 0.0 0.21 11.7 0.0 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Acetyltransf_13 PF13880.6 AHV91733.1 - 0.17 11.9 0.0 0.31 11.1 0.0 1.4 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase TIM PF00121.18 AHV91734.1 - 2.4e-78 262.9 0.0 2.7e-78 262.7 0.0 1.0 1 0 0 1 1 1 1 Triosephosphate isomerase LysR_substrate PF03466.20 AHV91735.1 - 3.5e-28 98.4 1.7 5e-28 97.9 1.7 1.2 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 AHV91735.1 - 4.2e-13 49.0 1.8 1.1e-12 47.7 1.8 1.8 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_11 PF08279.12 AHV91735.1 - 0.15 12.0 0.2 0.54 10.2 0.0 1.9 2 0 0 2 2 2 0 HTH domain GTP_EFTU PF00009.27 AHV91736.1 - 2.2e-52 177.4 0.0 3e-52 177.0 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain RF3_C PF16658.5 AHV91736.1 - 2e-43 147.4 0.0 3.8e-43 146.4 0.0 1.5 1 0 0 1 1 1 1 Class II release factor RF3, C-terminal domain GTP_EFTU_D2 PF03144.25 AHV91736.1 - 1.6e-07 31.6 0.0 2.9e-07 30.8 0.0 1.5 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 AHV91736.1 - 5.1e-07 29.8 0.0 1.1e-06 28.7 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase EFG_II PF14492.6 AHV91736.1 - 7.5e-05 22.8 0.0 0.00015 21.8 0.0 1.6 1 0 0 1 1 1 1 Elongation Factor G, domain II FeoB_N PF02421.18 AHV91736.1 - 0.0048 16.4 0.0 0.36 10.4 0.0 3.0 3 0 0 3 3 3 1 Ferrous iron transport protein B Roc PF08477.13 AHV91736.1 - 0.13 12.5 0.0 0.56 10.4 0.0 2.0 1 1 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase Ras PF00071.22 AHV91736.1 - 0.16 11.6 0.1 0.52 9.9 0.0 1.9 3 0 0 3 3 3 0 Ras family SecB PF02556.14 AHV91737.1 - 2e-49 167.1 0.0 2.6e-49 166.7 0.0 1.0 1 0 0 1 1 1 1 Preprotein translocase subunit SecB Rick_17kDa_Anti PF05433.15 AHV91738.1 - 4.7e-09 36.0 16.6 9.1e-09 35.0 16.6 1.5 1 0 0 1 1 1 1 Glycine zipper 2TM domain Gly-zipper_YMGG PF13441.6 AHV91738.1 - 2.7e-05 23.8 13.2 6.1e-05 22.7 13.2 1.6 1 0 0 1 1 1 1 YMGG-like Gly-zipper MtrC PF04211.13 AHV91738.1 - 0.24 10.4 4.6 2.7 7.0 0.3 2.3 2 0 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, subunit C Gly-zipper_Omp PF13488.6 AHV91738.1 - 3.8 7.6 23.8 2.4 8.3 19.0 2.7 2 1 0 2 2 2 0 Glycine zipper BPD_transp_1 PF00528.22 AHV91739.1 - 3.5e-21 75.8 36.9 7.2e-12 45.4 16.9 3.6 3 1 1 4 4 4 3 Binding-protein-dependent transport system inner membrane component sCache_2 PF17200.4 AHV91740.1 - 1.3e-34 119.3 0.0 2e-34 118.7 0.0 1.2 1 0 0 1 1 1 1 Single Cache domain 2 dCache_2 PF08269.11 AHV91740.1 - 1.7e-26 93.1 0.0 5.6e-26 91.4 0.0 1.4 1 1 0 1 1 1 1 Cache domain HisKA_3 PF07730.13 AHV91740.1 - 1e-18 67.6 1.0 1e-18 67.6 1.0 2.8 3 0 0 3 3 3 1 Histidine kinase Cache_3-Cache_2 PF17201.4 AHV91740.1 - 4.5e-13 49.1 0.0 6.9e-13 48.5 0.0 1.2 1 0 0 1 1 1 1 Cache 3/Cache 2 fusion domain HATPase_c PF02518.26 AHV91740.1 - 3e-06 27.7 0.0 7.8e-06 26.4 0.0 1.7 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 AHV91740.1 - 8.8e-05 22.5 0.0 0.00017 21.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain DUF4148 PF13663.6 AHV91740.1 - 0.034 14.3 2.0 0.35 11.1 0.1 2.9 3 1 0 3 3 3 0 Domain of unknown function (DUF4148) HATPase_c_3 PF13589.6 AHV91740.1 - 0.15 11.9 0.0 0.27 11.1 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tad PF13400.6 AHV91740.1 - 2.1 8.7 6.1 3.6 8.0 1.8 2.7 2 0 0 2 2 2 0 Putative Flp pilus-assembly TadE/G-like PsbL PF02419.17 AHV91741.1 - 0.068 13.2 2.0 0.093 12.7 2.0 1.2 1 0 0 1 1 1 0 PsbL protein Radical_SAM PF04055.21 AHV91742.1 - 2.9e-07 31.0 0.0 4.1e-07 30.5 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 AHV91742.1 - 4.6e-06 26.8 0.0 1.3e-05 25.3 0.0 1.7 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 AHV91742.1 - 0.0023 18.2 0.1 0.0043 17.3 0.1 1.4 1 1 0 1 1 1 1 4Fe-4S single cluster domain IDH PF03971.14 AHV91744.1 - 0 1309.4 0.2 0 1309.3 0.2 1.0 1 0 0 1 1 1 1 Monomeric isocitrate dehydrogenase CAMP_factor PF07373.11 AHV91744.1 - 0.0084 15.7 0.0 0.018 14.7 0.0 1.5 1 0 0 1 1 1 1 CAMP factor (Cfa) Acylphosphatase PF00708.18 AHV91744.1 - 0.098 13.1 0.0 0.27 11.7 0.0 1.7 1 0 0 1 1 1 0 Acylphosphatase ABC_tran PF00005.27 AHV91745.1 - 1e-30 107.0 0.0 1.4e-30 106.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_16 PF13191.6 AHV91745.1 - 0.00039 20.9 0.1 0.00063 20.2 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_21 PF13304.6 AHV91745.1 - 0.00067 19.6 0.1 0.071 12.9 0.0 2.1 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 AHV91745.1 - 0.0013 19.0 0.1 0.0038 17.5 0.1 1.7 1 1 0 1 1 1 1 AAA domain ABC_ATPase PF09818.9 AHV91745.1 - 0.0044 15.9 0.1 2.9 6.6 0.1 2.5 2 1 0 2 2 2 2 Predicted ATPase of the ABC class AAA_29 PF13555.6 AHV91745.1 - 0.012 15.3 0.1 0.023 14.4 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain NB-ARC PF00931.22 AHV91745.1 - 0.014 14.6 0.0 0.028 13.6 0.0 1.6 1 1 0 1 1 1 0 NB-ARC domain RsgA_GTPase PF03193.16 AHV91745.1 - 0.019 14.9 0.1 0.03 14.2 0.1 1.3 1 0 0 1 1 1 0 RsgA GTPase SbcCD_C PF13558.6 AHV91745.1 - 0.044 14.0 0.0 0.11 12.7 0.0 1.6 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.6 AHV91745.1 - 0.06 12.9 0.1 0.14 11.7 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 AHV91745.1 - 0.086 13.1 0.7 1.3 9.2 0.1 2.2 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 AHV91745.1 - 0.12 12.5 0.0 0.26 11.4 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase SMC_N PF02463.19 AHV91745.1 - 0.16 11.4 0.0 1.9 7.9 0.0 2.4 3 0 0 3 3 3 0 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 AHV91745.1 - 0.31 11.5 0.0 0.44 11.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain OTCace PF00185.24 AHV91746.1 - 0.057 13.5 0.0 0.29 11.2 0.0 1.9 1 1 0 1 1 1 0 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DUF3482 PF11981.8 AHV91747.1 - 8.3e-93 311.0 7.6 1.1e-92 310.5 7.6 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF3482) MMR_HSR1 PF01926.23 AHV91747.1 - 7.6e-16 58.2 0.0 1.4e-15 57.3 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 AHV91747.1 - 0.00073 19.1 0.0 0.0012 18.4 0.0 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B RsgA_GTPase PF03193.16 AHV91747.1 - 0.0026 17.7 0.1 0.0056 16.6 0.1 1.5 1 0 0 1 1 1 1 RsgA GTPase GTP_EFTU PF00009.27 AHV91747.1 - 0.0054 16.3 0.0 0.043 13.4 0.0 2.1 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain Roc PF08477.13 AHV91747.1 - 0.07 13.4 0.0 0.12 12.6 0.0 1.4 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase ABC_tran PF00005.27 AHV91747.1 - 0.085 13.4 0.0 0.2 12.2 0.0 1.6 1 0 0 1 1 1 0 ABC transporter AIG1 PF04548.16 AHV91747.1 - 0.087 12.1 0.0 0.14 11.5 0.0 1.3 1 0 0 1 1 1 0 AIG1 family SRPRB PF09439.10 AHV91747.1 - 0.094 12.1 0.0 0.15 11.4 0.0 1.3 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit Ras PF00071.22 AHV91747.1 - 0.11 12.1 0.0 0.16 11.5 0.0 1.2 1 0 0 1 1 1 0 Ras family AAA_22 PF13401.6 AHV91747.1 - 0.15 12.3 1.2 1.5 9.1 0.0 2.6 3 0 0 3 3 3 0 AAA domain AAA_24 PF13479.6 AHV91747.1 - 0.24 11.1 0.0 0.58 9.8 0.0 1.6 2 0 0 2 2 2 0 AAA domain Dynamin_N PF00350.23 AHV91747.1 - 0.25 11.4 0.0 1.3 9.1 0.0 2.0 1 1 1 2 2 2 0 Dynamin family Gly-zipper_YMGG PF13441.6 AHV91747.1 - 0.29 10.9 16.9 0.63 9.8 16.9 1.5 1 0 0 1 1 1 0 YMGG-like Gly-zipper Gly-zipper_Omp PF13488.6 AHV91747.1 - 0.43 10.6 16.6 0.91 9.6 16.6 1.4 1 0 0 1 1 1 0 Glycine zipper Gly-zipper_OmpA PF13436.6 AHV91747.1 - 2.5 8.0 20.2 4.9 7.0 20.2 1.4 1 0 0 1 1 1 0 Glycine-zipper domain DUF2809 PF10990.8 AHV91749.1 - 3.4e-19 69.3 6.3 4.4e-19 68.9 6.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2809) CD225 PF04505.12 AHV91749.1 - 0.74 10.0 4.1 0.43 10.7 0.7 2.3 2 1 1 3 3 3 0 Interferon-induced transmembrane protein DUF484 PF04340.12 AHV91750.1 - 7.6e-30 104.3 0.0 9.1e-30 104.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function, DUF484 HTH_Tnp_1 PF01527.20 AHV91752.1 - 5.6e-05 23.4 0.0 7.3e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 Transposase ExbD PF02472.16 AHV91753.1 - 2.2e-26 92.6 0.1 2.5e-26 92.4 0.1 1.1 1 0 0 1 1 1 1 Biopolymer transport protein ExbD/TolR OsmC PF02566.19 AHV91755.1 - 1e-20 74.1 0.3 1.2e-20 73.8 0.3 1.1 1 0 0 1 1 1 1 OsmC-like protein tRNA-synt_1b PF00579.25 AHV91756.1 - 1.8e-71 240.9 0.0 2.1e-71 240.6 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) S4 PF01479.25 AHV91756.1 - 3.9e-09 36.1 0.0 8.5e-09 35.0 0.0 1.5 1 0 0 1 1 1 1 S4 domain TyrRSs_C PF16714.5 AHV91756.1 - 0.00013 21.8 0.0 0.00031 20.5 0.0 1.7 2 0 0 2 2 2 1 Tyrosyl-tRNA synthetase C-terminal domain S4_2 PF13275.6 AHV91756.1 - 0.0016 18.2 0.1 0.0028 17.4 0.1 1.4 1 0 0 1 1 1 1 S4 domain tRNA-synt_1f PF01921.18 AHV91756.1 - 0.21 10.4 0.0 0.31 9.9 0.0 1.2 1 0 0 1 1 1 0 tRNA synthetases class I (K) Herpes_capsid PF06112.11 AHV91757.1 - 1 9.4 9.8 1.1 9.3 9.8 1.1 1 0 0 1 1 1 0 Gammaherpesvirus capsid protein Polysacc_deac_1 PF01522.21 AHV91758.1 - 5e-32 110.4 0.0 7e-32 109.9 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide deacetylase GntR PF00392.21 AHV91759.1 - 1.9e-20 72.2 0.0 4.1e-20 71.2 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family FCD PF07729.12 AHV91759.1 - 2.3e-16 60.4 11.3 4.3e-16 59.5 11.3 1.4 1 0 0 1 1 1 1 FCD domain Fe_dep_repress PF01325.19 AHV91759.1 - 5.6e-05 23.3 0.0 9.8e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_Crp_2 PF13545.6 AHV91759.1 - 0.00044 20.2 0.0 0.001 19.0 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_24 PF13412.6 AHV91759.1 - 0.00092 18.7 0.0 0.0019 17.7 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 AHV91759.1 - 0.0013 18.6 0.0 0.0036 17.2 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 AHV91759.1 - 0.0023 17.8 0.0 0.005 16.8 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_27 PF13463.6 AHV91759.1 - 0.0039 17.7 0.1 0.029 14.9 0.0 2.4 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_20 PF12840.7 AHV91759.1 - 0.0049 16.9 3.4 0.22 11.6 0.1 2.8 3 0 0 3 3 3 1 Helix-turn-helix domain MarR_2 PF12802.7 AHV91759.1 - 0.0066 16.3 0.1 0.02 14.8 0.1 1.8 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 AHV91759.1 - 0.0076 16.0 1.6 0.013 15.3 0.1 2.2 2 0 0 2 2 2 1 IclR helix-turn-helix domain TFIIE_alpha PF02002.17 AHV91759.1 - 0.017 15.0 0.1 0.13 12.2 0.0 2.1 2 0 0 2 2 2 0 TFIIE alpha subunit MarR PF01047.22 AHV91759.1 - 0.042 13.8 0.0 0.13 12.2 0.0 1.8 2 0 0 2 2 2 0 MarR family PaaX PF07848.12 AHV91759.1 - 0.066 13.5 0.1 0.21 11.8 0.1 1.9 1 0 0 1 1 1 0 PaaX-like protein Rrf2 PF02082.20 AHV91759.1 - 0.082 13.3 0.0 0.28 11.6 0.0 1.8 2 0 0 2 2 2 0 Transcriptional regulator MCPsignal PF00015.21 AHV91760.1 - 4.7e-58 195.8 32.7 7.2e-56 188.7 22.6 2.4 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 AHV91760.1 - 1.2e-13 51.2 9.4 1.2e-12 48.0 0.4 4.5 2 1 1 3 3 3 1 HAMP domain TarH PF02203.15 AHV91760.1 - 1.1e-07 32.0 0.7 1.1e-07 32.0 0.7 3.7 4 1 0 4 4 4 1 Tar ligand binding domain homologue BLOC1_2 PF10046.9 AHV91760.1 - 0.0038 17.5 5.0 9.1 6.7 0.0 3.6 2 2 1 3 3 3 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF4777 PF16007.5 AHV91760.1 - 0.059 13.6 0.8 23 5.4 0.0 3.7 3 0 0 3 3 3 0 Domain of unknown function (DUF4777) Prominin PF05478.11 AHV91760.1 - 0.077 11.0 4.3 0.068 11.1 0.8 2.2 1 1 1 2 2 2 0 Prominin DUF4200 PF13863.6 AHV91760.1 - 0.25 11.8 1.0 0.81 10.1 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) Syntaxin-6_N PF09177.11 AHV91760.1 - 0.35 11.5 5.2 1.8 9.1 2.4 2.8 2 1 0 2 2 2 0 Syntaxin 6, N-terminal T7SS_ESX_EspC PF10824.8 AHV91760.1 - 0.43 11.1 27.2 0.29 11.6 1.0 5.4 2 1 5 7 7 7 0 Excreted virulence factor EspC, type VII ESX diderm DUF1664 PF07889.12 AHV91760.1 - 0.7 9.9 11.7 6.8 6.8 1.8 3.5 2 1 1 3 3 3 0 Protein of unknown function (DUF1664) DUF948 PF06103.11 AHV91760.1 - 0.77 10.1 17.6 2.1 8.6 1.0 5.4 3 1 2 5 5 5 0 Bacterial protein of unknown function (DUF948) Acetyltransf_16 PF05301.11 AHV91760.1 - 1 9.1 6.1 2.6 7.8 1.2 2.7 1 1 1 2 2 2 0 GNAT acetyltransferase, Mec-17 Spectrin PF00435.21 AHV91760.1 - 1.9 9.0 4.9 13 6.3 0.8 2.9 2 1 1 3 3 3 0 Spectrin repeat Laminin_II PF06009.12 AHV91760.1 - 5.5 7.0 15.0 6.9 6.7 5.2 3.3 2 1 1 3 3 3 0 Laminin Domain II ISG65-75 PF11727.8 AHV91760.1 - 6.3 5.9 10.6 1.7 7.8 1.4 2.3 2 0 0 2 2 2 0 Invariant surface glycoprotein Atg14 PF10186.9 AHV91760.1 - 6.5 5.7 7.1 1.1 8.3 2.5 1.8 1 1 0 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 Mobilization_B PF17511.2 AHV91760.1 - 7.7 6.9 20.7 7.6 6.9 8.9 3.4 2 1 1 3 3 3 0 Mobilization protein B Spc7 PF08317.11 AHV91760.1 - 8.4 5.2 8.7 12 4.6 2.8 2.2 1 1 1 2 2 2 0 Spc7 kinetochore protein I_LWEQ PF01608.17 AHV91760.1 - 9.6 6.4 21.2 1.1 9.5 5.9 3.0 1 1 2 3 3 3 0 I/LWEQ domain BPD_transp_2 PF02653.16 AHV91761.1 - 2.1e-49 168.1 43.0 2.4e-49 167.9 43.0 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component ICMT PF04140.14 AHV91762.1 - 1.4e-14 54.2 0.2 1.4e-14 54.2 0.2 1.8 2 0 0 2 2 2 1 Isoprenylcysteine carboxyl methyltransferase (ICMT) family PEMT PF04191.13 AHV91762.1 - 7.8e-11 42.3 0.2 7.8e-11 42.3 0.2 2.0 2 0 0 2 2 2 1 Phospholipid methyltransferase ERG4_ERG24 PF01222.17 AHV91762.1 - 0.0048 15.7 0.0 0.011 14.5 0.0 1.5 2 0 0 2 2 2 1 Ergosterol biosynthesis ERG4/ERG24 family DUF3742 PF12553.8 AHV91762.1 - 0.39 10.8 4.6 0.39 10.8 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3742) MIase PF02426.16 AHV91763.1 - 5.6e-41 138.6 0.7 6.1e-41 138.5 0.7 1.0 1 0 0 1 1 1 1 Muconolactone delta-isomerase GST_N PF02798.20 AHV91764.1 - 1.6e-10 41.2 0.0 2.9e-10 40.3 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_C PF00043.25 AHV91764.1 - 6.1e-09 36.0 0.0 9.9e-09 35.3 0.0 1.3 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_N_2 PF13409.6 AHV91764.1 - 9.7e-09 35.4 0.0 2.2e-08 34.3 0.0 1.6 2 0 0 2 2 2 1 Glutathione S-transferase, N-terminal domain GST_N_3 PF13417.6 AHV91764.1 - 3.9e-08 33.6 0.0 9.5e-08 32.3 0.0 1.6 2 0 0 2 2 2 1 Glutathione S-transferase, N-terminal domain GST_C_2 PF13410.6 AHV91764.1 - 2.5e-07 30.6 0.1 5.6e-07 29.5 0.1 1.6 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C_3 PF14497.6 AHV91764.1 - 3.1e-05 24.1 0.0 5e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain Glutaredoxin2_C PF04399.13 AHV91764.1 - 0.026 14.4 0.0 0.039 13.8 0.0 1.2 1 0 0 1 1 1 0 Glutaredoxin 2, C terminal domain GST_C_6 PF17171.4 AHV91764.1 - 0.044 13.6 0.0 0.079 12.8 0.0 1.5 1 0 0 1 1 1 0 Glutathione S-transferase, C-terminal domain Entericidin PF08085.11 AHV91765.1 - 1.7e-09 37.4 0.6 2.2e-09 37.0 0.6 1.2 1 0 0 1 1 1 1 Entericidin EcnA/B family rve_3 PF13683.6 AHV91766.1 - 1.8e-31 107.7 0.0 4.1e-31 106.6 0.0 1.6 2 0 0 2 2 2 1 Integrase core domain rve PF00665.26 AHV91766.1 - 5.6e-24 84.6 0.0 9.5e-24 83.9 0.0 1.3 1 0 0 1 1 1 1 Integrase core domain rve_2 PF13333.6 AHV91766.1 - 7e-07 29.3 0.0 1.2e-06 28.6 0.0 1.3 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AHV91766.1 - 0.00052 20.3 0.0 0.00079 19.7 0.0 1.4 1 0 0 1 1 1 1 DDE domain AbiEii PF08843.11 AHV91767.1 - 0.00012 22.1 0.0 0.00013 22.0 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase AbiEii toxin, Type IV TA system Iso_dh PF00180.20 AHV91768.1 - 0.017 14.3 0.0 0.02 14.0 0.0 1.1 1 0 0 1 1 1 0 Isocitrate/isopropylmalate dehydrogenase DDE_Tnp_ISL3 PF01610.17 AHV91769.1 - 7.9e-65 218.9 1.2 1.1e-64 218.4 0.3 1.6 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV91769.1 - 1.4e-11 43.6 0.1 3.6e-11 42.3 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV91769.1 - 5.3e-09 36.6 11.2 1.1e-08 35.6 11.2 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV91769.1 - 0.0056 16.7 0.2 0.016 15.3 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain SLT_L PF14718.6 AHV91769.1 - 0.016 15.3 1.5 0.016 15.3 1.5 1.8 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain NOB1_Zn_bind PF08772.11 AHV91769.1 - 0.017 15.2 0.2 1.2 9.3 0.0 2.5 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-IS66 PF13005.7 AHV91769.1 - 8.2 6.9 9.6 3.6 8.1 6.6 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 BolA PF01722.18 AHV91770.1 - 6.1e-21 74.5 0.0 6.8e-21 74.3 0.0 1.1 1 0 0 1 1 1 1 BolA-like protein SecD_SecF PF02355.16 AHV91771.1 - 1.4e-20 73.5 4.0 2.9e-20 72.4 4.0 1.5 1 0 0 1 1 1 1 Protein export membrane protein SecD-TM1 PF13721.6 AHV91771.1 - 3e-13 50.1 3.9 3.5e-07 30.6 0.0 3.4 3 0 0 3 3 3 2 SecD export protein N-terminal TM region MMPL PF03176.15 AHV91771.1 - 1.6e-09 37.2 10.3 3.4e-09 36.1 10.3 1.5 1 0 0 1 1 1 1 MMPL family Sec_GG PF07549.14 AHV91771.1 - 3.8e-06 26.2 0.2 8e-06 25.2 0.2 1.6 1 0 0 1 1 1 1 SecD/SecF GG Motif ACR_tran PF00873.19 AHV91771.1 - 0.00032 18.5 4.7 0.00046 18.0 4.7 1.1 1 0 0 1 1 1 1 AcrB/AcrD/AcrF family Flavoprotein PF02441.19 AHV91772.1 - 1.7e-24 86.4 0.1 2.1e-24 86.0 0.1 1.1 1 0 0 1 1 1 1 Flavoprotein adh_short PF00106.25 AHV91773.1 - 1.2e-26 93.4 0.2 1.5e-26 93.1 0.2 1.0 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 AHV91773.1 - 7.4e-19 68.2 0.8 9.1e-19 67.9 0.8 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 AHV91773.1 - 2.5e-07 30.8 0.4 2.5e-07 30.8 0.4 1.7 2 0 0 2 2 2 1 KR domain Glyco_transf_4 PF13439.6 AHV91773.1 - 0.0092 16.0 0.1 0.026 14.5 0.1 1.8 1 1 1 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 AHV91773.1 - 0.0096 16.4 0.6 0.0096 16.4 0.6 2.0 1 1 1 2 2 2 1 Glycosyl transferase 4-like domain 3HCDH_N PF02737.18 AHV91773.1 - 0.016 15.1 0.0 0.027 14.4 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_10 PF13460.6 AHV91773.1 - 0.052 13.4 2.2 0.075 12.9 1.5 1.7 1 1 1 2 2 2 0 NAD(P)H-binding DUF543 PF04418.12 AHV91773.1 - 0.56 10.2 2.9 13 5.8 0.3 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF543) MMR_HSR1 PF01926.23 AHV91774.1 - 5.6e-24 84.4 0.1 1.1e-23 83.4 0.1 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase KH_2 PF07650.17 AHV91774.1 - 6.1e-16 58.0 0.0 1.6e-15 56.7 0.0 1.7 2 0 0 2 2 2 1 KH domain FeoB_N PF02421.18 AHV91774.1 - 9.9e-14 51.2 0.0 1.5e-13 50.6 0.0 1.2 1 0 0 1 1 1 1 Ferrous iron transport protein B Dynamin_N PF00350.23 AHV91774.1 - 1.6e-08 34.8 0.5 0.0014 18.7 0.3 2.4 1 1 1 2 2 2 2 Dynamin family RsgA_GTPase PF03193.16 AHV91774.1 - 2.9e-08 33.8 0.7 9.5e-06 25.6 0.2 2.2 2 0 0 2 2 2 2 RsgA GTPase AIG1 PF04548.16 AHV91774.1 - 1.1e-06 28.1 0.2 4.5e-06 26.1 0.0 1.9 2 0 0 2 2 2 1 AIG1 family GTP_EFTU PF00009.27 AHV91774.1 - 2.4e-06 27.3 0.8 0.0085 15.6 0.6 2.8 1 1 1 2 2 2 2 Elongation factor Tu GTP binding domain PduV-EutP PF10662.9 AHV91774.1 - 0.00011 21.9 0.0 0.00036 20.3 0.0 1.8 1 1 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation ABC_tran PF00005.27 AHV91774.1 - 0.021 15.3 0.1 0.029 14.9 0.1 1.7 1 1 0 1 1 1 0 ABC transporter AviRa PF11599.8 AHV91774.1 - 0.046 13.2 0.2 0.41 10.1 0.0 2.4 1 1 2 3 3 3 0 RRNA methyltransferase AviRa AAA_22 PF13401.6 AHV91774.1 - 0.086 13.1 0.1 0.54 10.5 0.0 2.1 1 1 0 2 2 2 0 AAA domain NB-ARC PF00931.22 AHV91774.1 - 0.15 11.3 0.0 1.6 7.8 0.0 2.2 2 0 0 2 2 2 0 NB-ARC domain MMR_HSR1_Xtn PF16897.5 AHV91774.1 - 0.15 12.0 0.0 0.37 10.8 0.0 1.6 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain MacB_PCD PF12704.7 AHV91776.1 - 4.5e-08 33.7 6.2 0.0038 17.6 2.4 2.7 3 0 0 3 3 3 2 MacB-like periplasmic core domain FtsX PF02687.21 AHV91776.1 - 2.5e-05 24.7 0.9 2.5e-05 24.7 0.9 5.7 6 1 0 6 6 6 2 FtsX-like permease family OppC_N PF12911.7 AHV91777.1 - 1.1e-05 25.2 0.4 1.3e-05 25.1 0.4 1.1 1 0 0 1 1 1 1 N-terminal TM domain of oligopeptide transport permease C CBP_BcsF PF11120.8 AHV91777.1 - 0.37 11.0 2.5 3.3 7.9 0.0 2.1 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsF rve PF00665.26 AHV91778.1 - 2.9e-32 111.3 0.7 4.3e-32 110.8 0.1 1.6 2 0 0 2 2 1 1 Integrase core domain LZ_Tnp_IS481 PF13011.6 AHV91778.1 - 7.7e-22 77.6 2.7 1.1e-19 70.7 0.4 2.6 1 1 1 2 2 2 1 leucine-zipper of insertion element IS481 rve_3 PF13683.6 AHV91778.1 - 5e-19 67.8 2.7 1.2e-18 66.6 2.7 1.7 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.6 AHV91778.1 - 6.1e-17 60.9 4.4 1.2e-07 31.3 0.1 2.7 2 0 0 2 2 2 2 Homeodomain-like domain HTH_28 PF13518.6 AHV91778.1 - 1.5e-15 57.1 6.5 5.9e-11 42.3 0.1 3.4 4 0 0 4 4 3 2 Helix-turn-helix domain HTH_29 PF13551.6 AHV91778.1 - 9.8e-12 44.7 0.6 2.6e-06 27.4 0.0 2.6 2 0 0 2 2 2 2 Winged helix-turn helix HTH_32 PF13565.6 AHV91778.1 - 9.4e-11 42.2 0.7 9.4e-11 42.2 0.7 2.4 2 1 0 2 2 2 1 Homeodomain-like domain HTH_38 PF13936.6 AHV91778.1 - 1.5e-06 27.9 0.6 5.1e-06 26.1 0.5 2.1 2 0 0 2 2 1 1 Helix-turn-helix domain MarR_2 PF12802.7 AHV91778.1 - 8e-06 25.6 3.1 9.5e-05 22.2 1.2 2.6 2 0 0 2 2 2 1 MarR family HTH_31 PF13560.6 AHV91778.1 - 1.4e-05 25.4 1.7 0.00059 20.1 0.4 3.2 3 0 0 3 3 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 AHV91778.1 - 3e-05 23.6 0.1 0.0064 16.1 0.3 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 AHV91778.1 - 4.6e-05 22.9 0.1 0.00056 19.4 0.2 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 YdaS_antitoxin PF15943.5 AHV91778.1 - 0.00022 21.0 0.2 0.24 11.3 0.0 2.8 2 0 0 2 2 2 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_Tnp_ISL3 PF13542.6 AHV91778.1 - 0.00023 20.5 8.5 0.002 17.5 0.6 3.9 4 0 0 4 4 3 1 Helix-turn-helix domain of transposase family ISL3 HTH_24 PF13412.6 AHV91778.1 - 0.00028 20.4 0.2 0.0021 17.6 0.3 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_3 PF01381.22 AHV91778.1 - 0.00032 20.7 0.7 0.013 15.5 0.3 2.5 2 0 0 2 2 2 1 Helix-turn-helix HTH_Crp_2 PF13545.6 AHV91778.1 - 0.0004 20.3 0.3 0.0027 17.6 0.2 2.3 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain Trp_repressor PF01371.19 AHV91778.1 - 0.00081 19.5 0.2 0.006 16.7 0.1 2.2 2 0 0 2 2 2 1 Trp repressor protein CENP-B_N PF04218.13 AHV91778.1 - 0.0016 18.0 0.0 1.6 8.5 0.1 2.3 2 0 0 2 2 2 1 CENP-B N-terminal DNA-binding domain LacI PF00356.21 AHV91778.1 - 0.0017 18.1 1.8 0.0046 16.7 0.7 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family Fe_dep_repress PF01325.19 AHV91778.1 - 0.002 18.3 0.0 0.034 14.4 0.1 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.20 AHV91778.1 - 0.0023 17.8 0.0 0.93 9.4 0.0 2.5 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 AHV91778.1 - 0.0025 17.6 1.3 0.035 13.9 0.7 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_psq PF05225.16 AHV91778.1 - 0.0025 17.5 0.7 2.3 8.0 0.4 2.9 3 0 0 3 3 3 1 helix-turn-helix, Psq domain HTH_11 PF08279.12 AHV91778.1 - 0.0026 17.7 0.4 0.015 15.3 0.5 2.2 2 0 0 2 2 2 1 HTH domain SpoIIID PF12116.8 AHV91778.1 - 0.0026 17.8 0.0 1.1 9.4 0.0 2.4 2 0 0 2 2 2 1 Stage III sporulation protein D HTH_AsnC-type PF13404.6 AHV91778.1 - 0.0036 17.1 2.7 0.045 13.6 1.1 2.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain RepB PF07506.11 AHV91778.1 - 0.0042 17.2 0.1 0.55 10.3 0.1 2.3 1 1 1 2 2 2 1 RepB plasmid partitioning protein HTH_17 PF12728.7 AHV91778.1 - 0.0043 17.2 0.7 6.1 7.1 0.0 3.3 3 1 0 3 3 3 0 Helix-turn-helix domain HTH_Tnp_1 PF01527.20 AHV91778.1 - 0.005 17.1 0.5 0.11 12.8 0.0 2.7 1 1 1 2 2 2 1 Transposase GntR PF00392.21 AHV91778.1 - 0.0053 16.4 0.8 0.5 10.1 0.3 2.5 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_10 PF04967.12 AHV91778.1 - 0.0077 16.0 0.1 0.049 13.4 0.2 2.2 2 0 0 2 2 2 1 HTH DNA binding domain HTH_35 PF13693.6 AHV91778.1 - 0.0093 16.0 1.5 0.073 13.1 0.6 2.7 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding UPF0175 PF03683.13 AHV91778.1 - 0.014 15.1 0.4 0.1 12.3 0.1 2.4 2 1 0 2 2 2 0 Uncharacterised protein family (UPF0175) HTH_30 PF13556.6 AHV91778.1 - 0.015 15.1 0.1 2 8.3 0.0 2.6 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain HTH_37 PF13744.6 AHV91778.1 - 0.016 15.2 0.1 0.13 12.3 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Tnp_4 PF13613.6 AHV91778.1 - 0.016 14.9 0.1 0.067 12.9 0.0 2.0 2 0 0 2 2 1 0 Helix-turn-helix of DDE superfamily endonuclease HTH_36 PF13730.6 AHV91778.1 - 0.02 14.8 0.1 0.58 10.2 0.0 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain KORA PF16509.5 AHV91778.1 - 0.034 14.4 0.1 3.6 8.0 0.0 3.0 3 0 0 3 3 3 0 TrfB plasmid transcriptional repressor MarR PF01047.22 AHV91778.1 - 0.045 13.7 0.1 0.14 12.1 0.1 1.8 2 0 0 2 2 1 0 MarR family DDE_Tnp_IS240 PF13610.6 AHV91778.1 - 0.048 13.9 0.1 0.071 13.3 0.1 1.3 1 0 0 1 1 1 0 DDE domain Crp PF00325.20 AHV91778.1 - 0.05 13.3 3.2 0.062 13.0 0.5 2.5 3 0 0 3 3 3 0 Bacterial regulatory proteins, crp family P22_Cro PF14549.6 AHV91778.1 - 0.051 13.4 1.6 9.6 6.1 0.1 2.5 2 0 0 2 2 2 0 DNA-binding transcriptional regulator Cro DUF746 PF05344.11 AHV91778.1 - 0.085 12.7 0.1 0.98 9.3 0.0 2.3 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) HTH_1 PF00126.27 AHV91778.1 - 0.1 12.5 2.8 4.7 7.2 0.5 2.6 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_26 PF13443.6 AHV91778.1 - 0.17 12.3 0.0 3.6 8.1 0.1 2.8 3 0 0 3 3 3 0 Cro/C1-type HTH DNA-binding domain HTH_8 PF02954.19 AHV91778.1 - 0.19 11.5 0.9 14 5.5 0.7 2.7 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family HTH_Tnp_Tc3_2 PF01498.18 AHV91778.1 - 0.27 11.5 2.6 0.47 10.7 0.1 2.6 3 0 0 3 3 1 0 Transposase HTH_33 PF13592.6 AHV91778.1 - 0.56 9.9 3.1 2.9 7.6 0.1 3.4 4 0 0 4 4 2 0 Winged helix-turn helix MerR PF00376.23 AHV91778.1 - 0.72 9.7 6.8 3.2 7.6 0.0 3.6 4 0 0 4 4 2 0 MerR family regulatory protein BPD_transp_2 PF02653.16 AHV91779.1 - 2e-41 141.9 40.9 2.3e-41 141.7 40.9 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Caveolin PF01146.17 AHV91779.1 - 0.031 14.2 3.5 0.031 14.2 3.5 3.1 3 2 1 4 4 4 0 Caveolin Queuosine_synth PF02547.15 AHV91780.1 - 1.6e-42 145.8 0.1 1.8e-42 145.7 0.1 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein CRS1_YhbY PF01985.21 AHV91781.1 - 4.4e-19 68.4 0.0 6.3e-19 67.9 0.0 1.2 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain DUF4667 PF15700.5 AHV91781.1 - 0.044 13.9 0.0 0.046 13.8 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4667) DDE_Tnp_ISL3 PF01610.17 AHV91782.1 - 7.9e-65 218.9 1.2 1.1e-64 218.4 0.3 1.6 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV91782.1 - 1.4e-11 43.6 0.1 3.6e-11 42.3 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV91782.1 - 5.3e-09 36.6 11.2 1.1e-08 35.6 11.2 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV91782.1 - 0.0056 16.7 0.2 0.016 15.3 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain SLT_L PF14718.6 AHV91782.1 - 0.016 15.3 1.5 0.016 15.3 1.5 1.8 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain NOB1_Zn_bind PF08772.11 AHV91782.1 - 0.017 15.2 0.2 1.2 9.3 0.0 2.5 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-IS66 PF13005.7 AHV91782.1 - 8.2 6.9 9.6 3.6 8.1 6.6 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Toxin_YhaV PF11663.8 AHV91784.1 - 1.7e-58 196.6 0.3 1.9e-58 196.4 0.3 1.0 1 0 0 1 1 1 1 Toxin with endonuclease activity, of toxin-antitoxin system DUF3303 PF11746.8 AHV91784.1 - 0.08 13.2 0.0 5.8 7.3 0.0 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF3303) ILVD_EDD PF00920.21 AHV91785.1 - 1.6e-215 716.6 4.9 1.8e-215 716.4 4.9 1.0 1 0 0 1 1 1 1 Dehydratase family BPD_transp_1 PF00528.22 AHV91786.1 - 4.6e-18 65.6 12.1 4.6e-18 65.6 12.1 2.1 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF4293 PF14126.6 AHV91786.1 - 0.0016 18.7 3.3 0.0016 18.7 3.3 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4293) DUF2273 PF10031.9 AHV91786.1 - 0.009 16.0 0.0 0.009 16.0 0.0 3.9 5 0 0 5 5 5 1 Small integral membrane protein (DUF2273) SecD_SecF PF02355.16 AHV91787.1 - 2.1e-64 216.4 7.1 2.1e-64 216.4 7.1 1.5 2 0 0 2 2 2 1 Protein export membrane protein Sec_GG PF07549.14 AHV91787.1 - 7.9e-09 34.7 0.1 1.6e-08 33.7 0.1 1.6 1 0 0 1 1 1 1 SecD/SecF GG Motif DUF2721 PF11026.8 AHV91787.1 - 0.0049 16.8 1.5 0.0049 16.8 1.5 3.1 2 1 1 3 3 3 2 Protein of unknown function (DUF2721) DUF5056 PF16479.5 AHV91787.1 - 1.1 9.5 4.7 3.8 7.8 0.3 3.2 3 1 0 3 3 3 0 Domain of unknown function (DUF5056) CDO_I PF05995.12 AHV91788.1 - 3e-05 23.4 0.0 3.6e-05 23.2 0.0 1.1 1 0 0 1 1 1 1 Cysteine dioxygenase type I ACR_tran PF00873.19 AHV91789.1 - 0 1093.0 33.3 0 1092.8 33.3 1.0 1 0 0 1 1 1 1 AcrB/AcrD/AcrF family MMPL PF03176.15 AHV91789.1 - 5.7e-08 32.1 16.2 5.7e-08 32.1 16.2 3.2 4 1 0 4 4 4 1 MMPL family SecD_SecF PF02355.16 AHV91789.1 - 0.00026 20.5 40.4 0.00027 20.4 13.2 3.5 4 0 0 4 4 4 2 Protein export membrane protein Patched PF02460.18 AHV91789.1 - 0.026 12.6 25.0 0.018 13.2 13.2 2.1 2 0 0 2 2 2 0 Patched family Laminin_II PF06009.12 AHV91789.1 - 0.25 11.3 1.0 1.1 9.2 0.2 2.4 2 0 0 2 2 2 0 Laminin Domain II FliJ PF02050.16 AHV91790.1 - 0.0069 16.6 3.9 0.0088 16.3 3.9 1.1 1 0 0 1 1 1 1 Flagellar FliJ protein Herpes_UL7 PF01677.16 AHV91790.1 - 0.067 12.9 0.0 0.073 12.8 0.0 1.0 1 0 0 1 1 1 0 Herpesvirus UL7 like NUC PF18510.1 AHV91790.1 - 0.077 13.4 0.1 0.13 12.7 0.1 1.4 1 1 0 1 1 1 0 Nuclease domain FliJ PF02050.16 AHV91791.1 - 5.5e-35 120.3 9.1 6.2e-35 120.1 9.1 1.0 1 0 0 1 1 1 1 Flagellar FliJ protein Glycos_transf_4 PF00953.21 AHV91792.1 - 4e-28 98.4 18.0 4e-28 98.4 18.0 1.8 2 0 0 2 2 2 1 Glycosyl transferase family 4 Peptidase_M50 PF02163.22 AHV91793.1 - 2e-40 138.7 0.0 2e-40 138.7 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M50 PDZ_6 PF17820.1 AHV91793.1 - 3.6e-08 33.1 3.4 3.6e-06 26.7 0.1 2.6 2 0 0 2 2 2 2 PDZ domain PDZ_2 PF13180.6 AHV91793.1 - 6.9e-07 29.5 0.0 2.1e-06 28.0 0.0 1.8 2 0 0 2 2 2 1 PDZ domain PDZ PF00595.24 AHV91793.1 - 1.1e-06 28.9 0.1 0.00025 21.3 0.0 2.2 2 0 0 2 2 2 2 PDZ domain Tricorn_PDZ PF14685.6 AHV91793.1 - 0.00045 20.1 0.0 0.0011 18.8 0.0 1.7 1 0 0 1 1 1 1 Tricorn protease PDZ domain Peptidase_M50B PF13398.6 AHV91793.1 - 0.044 13.4 1.1 0.05 13.2 0.1 1.7 2 0 0 2 2 2 0 Peptidase M50B-like AvrPphF-ORF-2 PF09143.10 AHV91793.1 - 0.071 13.0 0.0 0.1 12.5 0.0 1.2 1 0 0 1 1 1 0 AvrPphF-ORF-2 DUF533 PF04391.12 AHV91794.1 - 1.7e-37 128.8 3.9 1.8e-37 128.6 3.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF533) TerB PF05099.13 AHV91794.1 - 0.024 14.6 0.6 0.21 11.6 0.6 2.1 1 1 0 1 1 1 0 Tellurite resistance protein TerB DNA_pol3_alpha PF07733.12 AHV91795.1 - 8.4e-102 340.2 0.0 1.3e-101 339.5 0.0 1.3 1 0 0 1 1 1 1 Bacterial DNA polymerase III alpha NTPase domain DNA_pol3_finger PF17657.1 AHV91795.1 - 1.2e-63 213.3 0.0 2e-63 212.7 0.0 1.3 1 0 0 1 1 1 1 Bacterial DNA polymerase III alpha subunit finger domain PHP PF02811.19 AHV91795.1 - 6.2e-43 147.0 0.0 2e-42 145.3 0.0 1.9 2 0 0 2 2 2 1 PHP domain HHH_6 PF14579.6 AHV91795.1 - 1.2e-28 99.2 0.0 2.8e-28 98.0 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif tRNA_anti-codon PF01336.25 AHV91795.1 - 1.4e-10 41.0 0.4 5.3e-10 39.2 0.1 2.0 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain tRNA_anti_2 PF13742.6 AHV91795.1 - 0.0048 17.1 0.0 0.011 15.9 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain RecG_wedge PF17191.4 AHV91795.1 - 0.043 13.4 0.0 0.1 12.2 0.0 1.5 1 0 0 1 1 1 0 RecG wedge domain Peripla_BP_6 PF13458.6 AHV91796.1 - 6.3e-51 174.1 5.4 7.2e-51 173.9 5.4 1.0 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.28 AHV91796.1 - 2.6e-15 56.4 0.0 5.2e-15 55.4 0.0 1.4 2 0 0 2 2 2 1 Receptor family ligand binding region Peripla_BP_5 PF13433.6 AHV91796.1 - 2.2e-05 23.6 0.1 7.7e-05 21.8 0.1 1.9 1 1 0 1 1 1 1 Periplasmic binding protein domain Arm-DNA-bind_2 PF12167.8 AHV91797.1 - 1.4e-10 41.0 0.0 1.5e-10 40.8 0.0 1.0 1 0 0 1 1 1 1 Arm DNA-binding domain RisS_PPD PF16524.5 AHV91798.1 - 2.7e-39 133.7 0.2 4.6e-39 133.0 0.2 1.4 1 0 0 1 1 1 1 Periplasmic domain of Sensor histidine kinase RisS HATPase_c PF02518.26 AHV91798.1 - 1.2e-17 64.4 0.0 2.3e-17 63.5 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HAMP PF00672.25 AHV91798.1 - 8.6e-12 45.3 0.2 2.6e-11 43.7 0.2 1.9 1 0 0 1 1 1 1 HAMP domain HisKA PF00512.25 AHV91798.1 - 6e-07 29.4 5.1 4.7e-06 26.5 0.1 3.5 4 0 0 4 4 4 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.6 AHV91798.1 - 0.0002 21.3 0.0 0.00053 19.9 0.0 1.7 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.6 AHV91798.1 - 0.00021 21.1 0.0 0.00035 20.4 0.0 1.3 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.6 AHV91798.1 - 0.036 13.9 0.0 0.06 13.2 0.0 1.3 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LysR_substrate PF03466.20 AHV91799.1 - 5.3e-32 110.9 0.4 7.3e-32 110.4 0.4 1.1 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 AHV91799.1 - 1.1e-16 60.5 1.9 2.4e-16 59.4 0.3 2.2 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_30 PF13556.6 AHV91799.1 - 0.062 13.1 0.1 1.2 9.0 0.0 2.3 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain Sua5_yciO_yrdC PF01300.18 AHV91800.1 - 8.6e-28 97.0 0.0 1.2e-27 96.6 0.0 1.1 1 0 0 1 1 1 1 Telomere recombination Sigma54_activat PF00158.26 AHV91801.1 - 4.9e-62 208.6 0.0 6.8e-62 208.1 0.0 1.2 1 0 0 1 1 1 1 Sigma-54 interaction domain Sigma54_activ_2 PF14532.6 AHV91801.1 - 8.1e-19 68.1 0.0 1.4e-18 67.3 0.0 1.4 1 0 0 1 1 1 1 Sigma-54 interaction domain HTH_8 PF02954.19 AHV91801.1 - 5.5e-13 48.5 2.8 3.4e-12 46.0 1.0 2.8 2 0 0 2 2 2 1 Bacterial regulatory protein, Fis family Mg_chelatase PF01078.21 AHV91801.1 - 0.00033 20.1 0.0 0.00064 19.2 0.0 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI HTH_23 PF13384.6 AHV91801.1 - 0.00099 18.8 0.8 0.0032 17.2 0.4 2.1 2 0 0 2 2 2 1 Homeodomain-like domain AAA_5 PF07728.14 AHV91801.1 - 0.0015 18.6 0.0 0.0033 17.4 0.0 1.6 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) HTH_28 PF13518.6 AHV91801.1 - 0.022 14.9 0.9 0.42 10.8 0.1 2.6 2 0 0 2 2 2 0 Helix-turn-helix domain Ribosomal_S9 PF00380.19 AHV91802.1 - 8.1e-45 152.3 1.0 9.1e-45 152.1 1.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 IstB_IS21 PF01695.17 AHV91803.1 - 5.2e-63 212.0 0.1 6.8e-63 211.6 0.1 1.1 1 0 0 1 1 1 1 IstB-like ATP binding protein Bac_DnaA PF00308.18 AHV91803.1 - 2.5e-07 30.8 0.0 3.4e-07 30.3 0.0 1.1 1 0 0 1 1 1 1 Bacterial dnaA protein AAA PF00004.29 AHV91803.1 - 2.1e-06 28.2 0.0 3.7e-06 27.4 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 AHV91803.1 - 2.8e-06 27.8 0.4 0.00017 22.0 0.4 2.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 AHV91803.1 - 4e-05 23.9 0.0 0.023 15.0 0.0 2.5 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.14 AHV91803.1 - 5.2e-05 23.3 0.0 0.00018 21.5 0.0 1.8 1 1 1 2 2 2 1 AAA domain (dynein-related subfamily) RsgA_GTPase PF03193.16 AHV91803.1 - 0.00011 22.2 0.0 0.00027 20.9 0.0 1.7 2 0 0 2 2 2 1 RsgA GTPase AAA_14 PF13173.6 AHV91803.1 - 0.0003 20.8 0.0 0.00069 19.7 0.0 1.6 2 0 0 2 2 2 1 AAA domain PhoH PF02562.16 AHV91803.1 - 0.002 17.6 0.1 0.0033 16.9 0.1 1.4 1 0 0 1 1 1 1 PhoH-like protein AAA_28 PF13521.6 AHV91803.1 - 0.0051 17.1 0.0 0.0088 16.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain TniB PF05621.11 AHV91803.1 - 0.0091 15.4 0.0 4.4 6.7 0.0 2.3 1 1 1 2 2 2 2 Bacterial TniB protein ABC_tran PF00005.27 AHV91803.1 - 0.0095 16.5 0.0 0.026 15.0 0.0 1.6 1 1 0 1 1 1 1 ABC transporter AAA_18 PF13238.6 AHV91803.1 - 0.011 16.3 0.0 0.025 15.1 0.0 1.9 1 1 0 1 1 1 0 AAA domain Lon_2 PF13337.6 AHV91803.1 - 0.015 13.9 0.0 0.022 13.3 0.0 1.2 1 0 0 1 1 1 0 Putative ATP-dependent Lon protease AAA_33 PF13671.6 AHV91803.1 - 0.016 15.3 0.0 0.037 14.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 AHV91803.1 - 0.02 14.6 0.0 0.043 13.5 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain RNA_helicase PF00910.22 AHV91803.1 - 0.022 15.2 0.0 0.049 14.0 0.0 1.7 1 1 0 1 1 1 0 RNA helicase AAA_7 PF12775.7 AHV91803.1 - 0.027 14.0 0.0 0.094 12.2 0.0 1.9 2 1 0 2 2 2 0 P-loop containing dynein motor region Sigma54_activat PF00158.26 AHV91803.1 - 0.04 13.6 0.0 0.1 12.3 0.0 1.8 1 1 0 1 1 1 0 Sigma-54 interaction domain AAA_17 PF13207.6 AHV91803.1 - 0.041 14.3 0.0 0.19 12.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain DUF3572 PF12096.8 AHV91803.1 - 0.046 13.9 0.8 0.13 12.5 0.3 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3572) AAA_25 PF13481.6 AHV91803.1 - 0.058 13.0 0.0 0.36 10.4 0.0 2.0 1 1 1 2 2 2 0 AAA domain AAA_2 PF07724.14 AHV91803.1 - 0.078 13.1 0.0 0.18 11.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) Viral_helicase1 PF01443.18 AHV91803.1 - 0.12 12.1 0.0 0.17 11.6 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase NACHT PF05729.12 AHV91803.1 - 0.12 12.3 0.1 0.33 10.9 0.0 1.8 1 1 0 1 1 1 0 NACHT domain AAA_10 PF12846.7 AHV91803.1 - 0.14 11.1 0.0 0.2 10.5 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain AAA_24 PF13479.6 AHV91803.1 - 0.14 11.8 0.0 0.28 10.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain Roc PF08477.13 AHV91803.1 - 0.15 12.3 0.0 0.31 11.3 0.0 1.6 1 1 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase LysR_substrate PF03466.20 AHV91804.1 - 6.2e-43 146.6 0.9 9.9e-43 145.9 0.9 1.3 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 AHV91804.1 - 1.8e-17 63.0 3.4 3.5e-17 62.1 3.4 1.5 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_1 PF00126.27 AHV91805.1 - 6.6e-18 64.4 0.7 1.2e-17 63.5 0.7 1.5 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_20 PF12840.7 AHV91805.1 - 5.5e-05 23.1 1.3 0.0059 16.6 0.3 2.4 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_28 PF13518.6 AHV91805.1 - 0.00024 21.2 0.0 0.00059 19.9 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain LysR_substrate PF03466.20 AHV91805.1 - 0.00025 20.5 0.8 0.016 14.6 0.0 2.1 2 0 0 2 2 2 1 LysR substrate binding domain HTH_Tnp_ISL3 PF13542.6 AHV91805.1 - 0.00033 20.0 0.1 0.00055 19.3 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 MarR_2 PF12802.7 AHV91805.1 - 0.00055 19.8 1.2 0.001 18.9 0.4 1.8 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.20 AHV91805.1 - 0.00091 19.0 0.1 0.0016 18.2 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_AsnC-type PF13404.6 AHV91805.1 - 0.011 15.6 1.0 0.011 15.6 1.0 1.8 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_27 PF13463.6 AHV91805.1 - 0.016 15.7 0.0 0.023 15.2 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_24 PF13412.6 AHV91805.1 - 0.019 14.5 0.3 0.033 13.7 0.3 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_23 PF13384.6 AHV91805.1 - 0.022 14.6 0.0 0.043 13.6 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain HTH_30 PF13556.6 AHV91805.1 - 0.025 14.4 0.1 0.041 13.7 0.1 1.4 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_Mga PF08280.11 AHV91805.1 - 0.052 13.6 0.0 0.21 11.7 0.0 1.9 2 0 0 2 2 2 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_IclR PF09339.10 AHV91805.1 - 0.059 13.2 3.2 0.24 11.3 0.6 2.4 2 0 0 2 2 2 0 IclR helix-turn-helix domain TrmB PF01978.19 AHV91805.1 - 0.18 11.7 0.1 0.27 11.2 0.1 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB tRNA_edit PF04073.15 AHV91806.1 - 3.5e-23 82.0 0.0 4.1e-23 81.8 0.0 1.1 1 0 0 1 1 1 1 Aminoacyl-tRNA editing domain Phage_TAC_6 PF09550.10 AHV91806.1 - 0.037 14.5 0.3 0.084 13.3 0.3 1.6 1 0 0 1 1 1 0 Phage tail assembly chaperone protein, TAC CC PF04942.14 AHV91806.1 - 0.11 12.7 0.1 0.21 11.8 0.1 1.5 1 0 0 1 1 1 0 CC domain Glycos_transf_2 PF00535.26 AHV91807.1 - 1.8e-19 70.2 0.0 5.6e-19 68.6 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 AHV91807.1 - 5.2e-07 29.8 0.0 7.8e-07 29.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 AHV91807.1 - 8e-06 26.3 0.1 3.2e-05 24.4 0.1 2.1 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.9 AHV91807.1 - 0.045 13.2 0.0 0.061 12.8 0.0 1.2 1 0 0 1 1 1 0 Glycosyltransferase like family 2 AbiJ_NTD3 PF18860.1 AHV91808.1 - 2.2e-43 147.7 0.0 2.8e-43 147.4 0.0 1.1 1 0 0 1 1 1 1 AbiJ N-terminal domain 3 RraA-like PF03737.15 AHV91809.1 - 1e-40 139.4 2.5 1.3e-40 139.0 2.5 1.1 1 0 0 1 1 1 1 Aldolase/RraA ATP-synt PF00231.19 AHV91810.1 - 1.2e-90 304.0 0.4 1.3e-90 303.9 0.4 1.0 1 0 0 1 1 1 1 ATP synthase Inhibitor_I34 PF10466.9 AHV91810.1 - 0.0058 17.2 0.3 3.8 8.2 0.4 2.7 2 0 0 2 2 2 2 Saccharopepsin inhibitor I34 DUF3071 PF11268.8 AHV91810.1 - 0.0099 16.0 0.2 0.02 15.0 0.2 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF3071) Lentiviral_Tat PF02998.14 AHV91810.1 - 0.064 13.3 0.1 0.22 11.6 0.0 1.9 1 1 1 2 2 2 0 Lentiviral Tat protein Ntox1 PF15500.6 AHV91810.1 - 0.23 11.9 2.9 16 6.0 0.2 2.4 2 0 0 2 2 2 0 Putative RNase-like toxin, toxin_1 Mobilization_B PF17511.2 AHV91810.1 - 0.41 11.0 3.1 2.1 8.7 0.4 2.2 2 0 0 2 2 2 0 Mobilization protein B BacA PF02673.18 AHV91811.1 - 2.6e-82 276.4 10.1 3e-82 276.2 10.1 1.0 1 0 0 1 1 1 1 Bacitracin resistance protein BacA SfLAP PF11139.8 AHV91811.1 - 0.0037 16.7 11.1 0.099 12.1 1.1 2.2 1 1 1 2 2 2 2 Sap, sulfolipid-1-addressing protein Aldedh PF00171.22 AHV91812.1 - 6.3e-158 526.1 0.1 7.1e-158 525.9 0.1 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family NIF3 PF01784.18 AHV91813.1 - 6.9e-47 160.1 0.0 8.5e-47 159.8 0.0 1.0 1 0 0 1 1 1 1 NIF3 (NGG1p interacting factor 3) TPR_16 PF13432.6 AHV91814.1 - 2e-05 25.1 30.2 0.00013 22.5 11.3 3.7 2 1 3 5 5 4 4 Tetratricopeptide repeat TPR_17 PF13431.6 AHV91814.1 - 0.00011 22.3 0.5 0.0057 16.9 0.0 4.1 5 0 0 5 5 4 2 Tetratricopeptide repeat TPR_11 PF13414.6 AHV91814.1 - 0.00017 21.2 10.1 0.00076 19.1 0.3 3.8 3 2 1 4 4 4 2 TPR repeat TPR_2 PF07719.17 AHV91814.1 - 0.00042 20.2 15.5 0.019 15.1 0.1 5.1 6 0 0 6 6 6 2 Tetratricopeptide repeat TPR_1 PF00515.28 AHV91814.1 - 0.00049 19.8 4.0 0.13 12.1 0.0 4.0 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_19 PF14559.6 AHV91814.1 - 0.0011 19.5 2.7 0.0011 19.5 2.7 4.2 2 1 2 4 4 4 3 Tetratricopeptide repeat TPR_8 PF13181.6 AHV91814.1 - 0.005 17.0 0.3 4.7 7.7 0.0 4.2 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_9 PF13371.6 AHV91814.1 - 0.012 15.8 7.3 0.012 15.8 7.3 4.2 3 1 1 4 4 4 0 Tetratricopeptide repeat TPR_14 PF13428.6 AHV91814.1 - 0.017 15.9 24.6 0.2 12.6 1.4 5.3 2 1 3 5 5 5 0 Tetratricopeptide repeat TPR_12 PF13424.6 AHV91814.1 - 0.069 13.5 16.9 1.7 9.0 5.4 4.5 1 1 3 4 4 4 0 Tetratricopeptide repeat PNMA PF14893.6 AHV91814.1 - 0.42 10.0 4.0 0.21 11.0 1.9 1.5 2 0 0 2 2 2 0 PNMA GspL_C PF12693.7 AHV91814.1 - 0.93 9.3 12.0 0.13 12.1 7.7 1.8 2 0 0 2 2 2 0 GspL periplasmic domain FTSW_RODA_SPOVE PF01098.19 AHV91815.1 - 1.4e-104 350.0 21.7 1.9e-104 349.6 21.7 1.0 1 0 0 1 1 1 1 Cell cycle protein SK_channel PF03530.14 AHV91815.1 - 0.18 11.8 0.2 0.18 11.8 0.2 2.3 2 1 0 2 2 2 0 Calcium-activated SK potassium channel DUF4181 PF13789.6 AHV91815.1 - 6.5 7.1 9.6 0.12 12.7 0.8 2.6 3 0 0 3 3 3 0 Domain of unknown function (DUF4181) DUF3426 PF11906.8 AHV91816.1 - 0.026 14.7 0.0 0.039 14.1 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3426) rve PF00665.26 AHV91817.1 - 2.9e-32 111.3 0.7 4.3e-32 110.8 0.1 1.6 2 0 0 2 2 1 1 Integrase core domain LZ_Tnp_IS481 PF13011.6 AHV91817.1 - 1.9e-21 76.3 2.6 1.1e-19 70.7 0.4 2.6 1 1 1 2 2 2 1 leucine-zipper of insertion element IS481 rve_3 PF13683.6 AHV91817.1 - 5.1e-19 67.8 2.7 1.2e-18 66.6 2.7 1.7 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.6 AHV91817.1 - 1.6e-16 59.6 4.2 1.2e-07 31.3 0.1 2.7 2 0 0 2 2 2 2 Homeodomain-like domain HTH_28 PF13518.6 AHV91817.1 - 5.9e-15 55.1 6.1 5.9e-11 42.3 0.1 3.4 4 0 0 4 4 3 2 Helix-turn-helix domain HTH_29 PF13551.6 AHV91817.1 - 1.8e-11 43.9 0.5 2.6e-06 27.4 0.0 2.6 2 0 0 2 2 2 2 Winged helix-turn helix HTH_32 PF13565.6 AHV91817.1 - 3.8e-10 40.2 0.7 3.8e-10 40.2 0.7 2.4 2 1 0 2 2 2 1 Homeodomain-like domain HTH_38 PF13936.6 AHV91817.1 - 5.4e-06 26.1 0.5 1.9e-05 24.3 0.4 2.1 2 0 0 2 2 1 1 Helix-turn-helix domain MarR_2 PF12802.7 AHV91817.1 - 3e-05 23.8 3.0 0.00037 20.3 1.1 2.6 2 0 0 2 2 2 1 MarR family HTH_31 PF13560.6 AHV91817.1 - 6.8e-05 23.1 1.5 0.0033 17.8 0.3 3.2 3 0 0 3 3 3 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 AHV91817.1 - 0.00013 21.4 0.1 0.0016 17.9 0.2 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 YdaS_antitoxin PF15943.5 AHV91817.1 - 0.0003 20.6 0.2 0.33 10.9 0.0 2.8 2 0 0 2 2 2 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT Sigma70_r4_2 PF08281.12 AHV91817.1 - 0.00043 19.9 0.1 0.092 12.4 0.2 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_Tnp_ISL3 PF13542.6 AHV91817.1 - 0.00057 19.3 8.6 0.0047 16.3 0.6 3.9 4 0 0 4 4 3 1 Helix-turn-helix domain of transposase family ISL3 HTH_24 PF13412.6 AHV91817.1 - 0.00062 19.3 0.2 0.0045 16.5 0.3 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_3 PF01381.22 AHV91817.1 - 0.00094 19.2 0.6 0.041 14.0 0.2 2.5 2 0 0 2 2 2 1 Helix-turn-helix LacI PF00356.21 AHV91817.1 - 0.0015 18.3 1.6 0.0044 16.8 0.6 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family Trp_repressor PF01371.19 AHV91817.1 - 0.0016 18.5 0.2 0.012 15.7 0.1 2.2 2 0 0 2 2 2 1 Trp repressor protein HTH_Crp_2 PF13545.6 AHV91817.1 - 0.002 18.1 0.3 0.013 15.4 0.1 2.3 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain SpoIIID PF12116.8 AHV91817.1 - 0.003 17.6 0.0 1.1 9.4 0.0 2.4 2 0 0 2 2 2 1 Stage III sporulation protein D HTH_Tnp_1 PF01527.20 AHV91817.1 - 0.0042 17.4 0.4 0.11 12.8 0.0 2.7 1 1 1 2 2 2 1 Transposase CENP-B_N PF04218.13 AHV91817.1 - 0.0046 16.6 0.0 3.7 7.2 0.0 2.3 2 0 0 2 2 2 1 CENP-B N-terminal DNA-binding domain Fe_dep_repress PF01325.19 AHV91817.1 - 0.0051 17.0 0.0 0.086 13.1 0.1 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.20 AHV91817.1 - 0.0056 16.5 0.0 2.2 8.2 0.0 2.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 AHV91817.1 - 0.0079 16.0 0.9 0.12 12.1 0.4 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_17 PF12728.7 AHV91817.1 - 0.0082 16.3 0.6 6.1 7.1 0.0 3.3 3 1 0 3 3 3 0 Helix-turn-helix domain HTH_AsnC-type PF13404.6 AHV91817.1 - 0.0095 15.7 2.3 0.13 12.1 0.9 2.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain GntR PF00392.21 AHV91817.1 - 0.013 15.1 0.8 1.2 8.8 0.3 2.6 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_psq PF05225.16 AHV91817.1 - 0.017 14.8 0.5 8.2 6.3 0.0 2.9 3 0 0 3 3 3 0 helix-turn-helix, Psq domain HTH_11 PF08279.12 AHV91817.1 - 0.026 14.5 0.5 0.15 12.0 0.5 2.2 2 0 0 2 2 2 0 HTH domain HTH_10 PF04967.12 AHV91817.1 - 0.027 14.2 0.0 0.17 11.7 0.1 2.2 2 0 0 2 2 2 0 HTH DNA binding domain RepB PF07506.11 AHV91817.1 - 0.03 14.4 0.1 3.7 7.6 0.1 2.3 1 1 1 2 2 2 0 RepB plasmid partitioning protein HTH_Tnp_4 PF13613.6 AHV91817.1 - 0.033 13.9 0.1 0.13 12.0 0.1 2.0 2 0 0 2 2 1 0 Helix-turn-helix of DDE superfamily endonuclease HTH_35 PF13693.6 AHV91817.1 - 0.034 14.2 1.2 0.3 11.2 0.4 2.7 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding HTH_30 PF13556.6 AHV91817.1 - 0.034 14.0 0.0 2 8.3 0.0 2.5 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain DDE_Tnp_IS240 PF13610.6 AHV91817.1 - 0.048 13.9 0.1 0.071 13.3 0.1 1.3 1 0 0 1 1 1 0 DDE domain P22_Cro PF14549.6 AHV91817.1 - 0.062 13.2 1.5 9.6 6.1 0.1 2.5 2 0 0 2 2 2 0 DNA-binding transcriptional regulator Cro HTH_37 PF13744.6 AHV91817.1 - 0.068 13.1 0.1 0.55 10.2 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain UPF0175 PF03683.13 AHV91817.1 - 0.073 12.8 0.3 0.56 10.0 0.1 2.4 2 1 0 2 2 2 0 Uncharacterised protein family (UPF0175) HTH_1 PF00126.27 AHV91817.1 - 0.098 12.6 1.9 7.3 6.6 0.2 2.6 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family Crp PF00325.20 AHV91817.1 - 0.11 12.2 2.8 0.16 11.6 0.4 2.6 3 0 0 3 3 3 0 Bacterial regulatory proteins, crp family DUF746 PF05344.11 AHV91817.1 - 0.11 12.3 0.1 0.98 9.3 0.0 2.3 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) MarR PF01047.22 AHV91817.1 - 0.11 12.4 0.1 0.36 10.8 0.1 1.8 2 0 0 2 2 1 0 MarR family KORA PF16509.5 AHV91817.1 - 0.14 12.5 0.1 14 6.0 0.0 3.0 3 0 0 3 3 3 0 TrfB plasmid transcriptional repressor HTH_36 PF13730.6 AHV91817.1 - 0.17 11.8 0.0 5.2 7.1 0.0 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_Tnp_Tc3_2 PF01498.18 AHV91817.1 - 0.38 11.0 2.7 0.63 10.3 0.1 2.6 3 0 0 3 3 1 0 Transposase MerR PF00376.23 AHV91817.1 - 0.77 9.6 6.8 3.2 7.6 0.0 3.6 4 0 0 4 4 2 0 MerR family regulatory protein PLDc_2 PF13091.6 AHV91818.1 - 8.4e-42 142.2 0.0 1.2e-23 83.4 0.0 2.1 2 0 0 2 2 2 2 PLD-like domain PLDc PF00614.22 AHV91818.1 - 3.8e-05 23.7 0.2 0.0022 18.1 0.0 2.5 2 0 0 2 2 2 1 Phospholipase D Active site motif FAM83 PF07894.12 AHV91818.1 - 0.13 11.7 0.0 7.3 6.1 0.0 2.1 2 0 0 2 2 2 0 FAM83 A-H TadE PF07811.12 AHV91819.1 - 2e-07 31.1 0.5 2e-07 31.1 0.5 2.2 3 0 0 3 3 3 1 TadE-like protein TetR_C_24 PF17932.1 AHV91820.1 - 8.6e-24 84.0 0.5 1.1e-23 83.6 0.5 1.2 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_27 PF17935.1 AHV91820.1 - 4e-06 26.8 0.4 9.8e-06 25.6 0.4 1.7 1 1 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_N PF00440.23 AHV91820.1 - 6.7e-05 22.6 0.5 0.0015 18.3 0.0 2.7 3 0 0 3 3 3 1 Bacterial regulatory proteins, tetR family TetR_C_29 PF17938.1 AHV91820.1 - 0.0079 16.3 0.1 0.013 15.6 0.1 1.4 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain Peptidase_M35 PF02102.15 AHV91820.1 - 0.22 10.4 0.2 0.26 10.1 0.2 1.1 1 0 0 1 1 1 0 Deuterolysin metalloprotease (M35) family TetR_C_6 PF13977.6 AHV91820.1 - 0.99 9.7 6.7 1.9 8.8 4.7 2.2 1 1 1 2 2 2 0 BetI-type transcriptional repressor, C-terminal ArsC PF03960.15 AHV91821.1 - 2.2e-12 46.8 0.0 2.2e-12 46.8 0.0 1.1 1 0 0 1 1 1 1 ArsC family Glutaredoxin PF00462.24 AHV91821.1 - 1.1e-06 28.7 0.0 1.6e-06 28.2 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin COX4 PF02936.14 AHV91821.1 - 0.078 13.0 0.0 0.099 12.7 0.0 1.1 1 0 0 1 1 1 0 Cytochrome c oxidase subunit IV DUF836 PF05768.14 AHV91821.1 - 0.2 12.1 0.0 0.3 11.5 0.0 1.4 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) Response_reg PF00072.24 AHV91822.1 - 9.5e-20 70.8 0.0 1.6e-19 70.2 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 AHV91822.1 - 1.6e-10 40.9 0.0 2.7e-10 40.2 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal GspH PF12019.8 AHV91822.1 - 0.059 13.8 0.1 0.1 13.0 0.1 1.4 1 0 0 1 1 1 0 Type II transport protein GspH ABC_tran PF00005.27 AHV91823.1 - 1.1e-30 107.0 0.0 1.4e-30 106.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 AHV91823.1 - 1.4e-06 27.9 0.0 0.0035 16.8 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 AHV91823.1 - 1.7e-06 28.0 0.0 0.0036 17.1 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 AHV91823.1 - 0.0001 21.9 0.2 0.0002 21.0 0.2 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 AHV91823.1 - 0.0021 18.4 0.3 0.039 14.2 0.3 2.2 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 AHV91823.1 - 0.006 17.0 3.8 0.029 14.8 3.8 2.0 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 AHV91823.1 - 0.011 15.6 0.0 0.019 14.9 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_25 PF13481.6 AHV91823.1 - 0.017 14.7 0.1 0.049 13.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 AHV91823.1 - 0.028 15.0 0.8 1.1 9.8 0.5 2.8 2 1 1 3 3 3 0 AAA domain FtsK_SpoIIIE PF01580.18 AHV91823.1 - 0.028 13.8 0.0 0.049 13.0 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family MeaB PF03308.16 AHV91823.1 - 0.032 13.2 0.1 0.081 11.9 0.0 1.7 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_28 PF13521.6 AHV91823.1 - 0.032 14.5 0.4 0.15 12.3 0.1 2.1 2 1 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 AHV91823.1 - 0.043 13.5 0.0 0.55 9.9 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_23 PF13476.6 AHV91823.1 - 0.068 13.7 0.0 0.098 13.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 AHV91823.1 - 0.073 13.0 0.1 0.16 11.9 0.1 1.6 1 0 0 1 1 1 0 NACHT domain AAA_30 PF13604.6 AHV91823.1 - 0.078 12.7 0.1 0.25 11.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 AHV91823.1 - 0.087 12.9 0.1 0.2 11.7 0.1 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_33 PF13671.6 AHV91823.1 - 0.11 12.7 5.9 2 8.5 5.9 2.5 1 1 0 1 1 1 0 AAA domain DUF87 PF01935.17 AHV91823.1 - 0.17 11.9 0.0 0.3 11.1 0.0 1.4 1 0 0 1 1 1 0 Helicase HerA, central domain AAA_15 PF13175.6 AHV91823.1 - 0.3 10.7 0.0 0.45 10.2 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain Acetyltransf_3 PF13302.7 AHV91825.1 - 5.3e-12 46.6 0.1 5.8e-12 46.5 0.1 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 AHV91825.1 - 2.8e-05 24.3 0.1 3.5e-05 24.0 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 AHV91825.1 - 0.0079 16.1 0.1 0.0094 15.9 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 AHV91825.1 - 0.014 15.8 0.4 0.023 15.1 0.3 1.3 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain adh_short_C2 PF13561.6 AHV91826.1 - 4.2e-53 180.3 5.0 5e-53 180.1 5.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 AHV91826.1 - 3.8e-41 140.7 0.1 5.2e-41 140.3 0.1 1.2 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 AHV91826.1 - 6.7e-05 22.9 0.2 0.00026 21.0 0.2 1.9 1 1 0 1 1 1 1 KR domain Epimerase PF01370.21 AHV91826.1 - 0.011 15.3 0.1 0.026 14.0 0.1 1.9 1 1 0 1 1 1 0 NAD dependent epimerase/dehydratase family FAD_binding_4 PF01565.23 AHV91827.1 - 2.9e-31 108.0 0.3 3.3e-31 107.9 0.3 1.0 1 0 0 1 1 1 1 FAD binding domain Abhydrolase_2 PF02230.16 AHV91828.1 - 5.2e-51 173.5 0.0 5.8e-51 173.4 0.0 1.0 1 0 0 1 1 1 1 Phospholipase/Carboxylesterase DLH PF01738.18 AHV91828.1 - 1.2e-05 25.0 0.0 1.6e-05 24.6 0.0 1.1 1 0 0 1 1 1 1 Dienelactone hydrolase family FSH1 PF03959.13 AHV91828.1 - 9.6e-05 22.1 0.0 0.00027 20.7 0.0 1.7 1 1 0 1 1 1 1 Serine hydrolase (FSH1) Abhydrolase_3 PF07859.13 AHV91828.1 - 0.00041 20.3 0.1 0.0018 18.2 0.1 1.6 1 1 1 2 2 2 1 alpha/beta hydrolase fold Peptidase_S9 PF00326.21 AHV91828.1 - 0.0039 16.7 0.1 0.049 13.1 0.0 2.0 1 1 0 2 2 2 1 Prolyl oligopeptidase family Hydrolase_4 PF12146.8 AHV91828.1 - 0.0041 16.4 0.5 0.78 9.0 0.0 2.7 2 1 1 3 3 3 2 Serine aminopeptidase, S33 Cutinase PF01083.22 AHV91828.1 - 0.01 15.8 0.0 0.016 15.2 0.0 1.3 1 0 0 1 1 1 0 Cutinase Pyr_redox_2 PF07992.14 AHV91829.1 - 5.5e-54 183.4 0.0 6.5e-54 183.1 0.0 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 AHV91829.1 - 2.5e-15 56.8 1.8 4.4e-10 40.0 0.6 3.0 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 AHV91829.1 - 2.7e-06 26.7 0.7 0.029 13.4 0.1 2.7 3 0 0 3 3 3 2 Lycopene cyclase protein DAO PF01266.24 AHV91829.1 - 1.4e-05 24.8 12.5 0.14 11.7 1.1 4.1 2 2 2 4 4 4 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 AHV91829.1 - 4.9e-05 23.5 1.0 0.031 14.5 0.1 2.8 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.6 AHV91829.1 - 0.00034 20.0 0.5 0.097 11.9 0.0 2.6 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 AHV91829.1 - 0.00096 18.0 0.8 0.8 8.3 0.1 3.1 3 0 0 3 3 3 2 HI0933-like protein TrkA_N PF02254.18 AHV91829.1 - 0.0015 18.8 0.1 2.3 8.5 0.0 2.8 2 0 0 2 2 2 2 TrkA-N domain FAD_binding_2 PF00890.24 AHV91829.1 - 0.0026 16.9 1.1 1 8.4 0.1 2.7 3 0 0 3 3 3 2 FAD binding domain ThiF PF00899.21 AHV91829.1 - 0.0054 16.1 0.1 3.1 7.1 0.0 2.4 2 0 0 2 2 2 2 ThiF family FAD_binding_3 PF01494.19 AHV91829.1 - 0.012 14.9 3.6 3.5 6.8 0.4 3.0 3 0 0 3 3 3 0 FAD binding domain NAD_binding_9 PF13454.6 AHV91829.1 - 0.014 15.4 4.4 1.3 9.0 0.1 3.0 3 1 0 3 3 2 0 FAD-NAD(P)-binding Trp_halogenase PF04820.14 AHV91829.1 - 0.022 13.6 0.2 0.51 9.1 0.0 2.7 3 0 0 3 3 3 0 Tryptophan halogenase Thi4 PF01946.17 AHV91829.1 - 0.034 13.4 0.3 5.8 6.1 0.0 2.4 2 0 0 2 2 2 0 Thi4 family K_oxygenase PF13434.6 AHV91829.1 - 0.038 13.1 0.0 6.4 5.8 0.0 2.2 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) Cas9_b_hairpin PF17893.1 AHV91829.1 - 0.061 13.1 0.0 0.22 11.3 0.0 1.9 1 0 0 1 1 1 0 CRISPR-associated endonuclease Cas9 beta-hairpin domain ApbA PF02558.16 AHV91829.1 - 0.085 12.5 0.4 15 5.2 0.0 2.5 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA GIDA PF01134.22 AHV91829.1 - 0.15 11.1 0.7 8.7 5.3 0.1 2.2 2 0 0 2 2 2 0 Glucose inhibited division protein A adh_short_C2 PF13561.6 AHV91830.1 - 2.7e-54 184.2 5.5 3.1e-54 184.0 5.5 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 AHV91830.1 - 1.4e-46 158.5 0.7 1.7e-46 158.2 0.7 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 AHV91830.1 - 1.5e-13 51.1 2.6 2e-13 50.6 2.6 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 AHV91830.1 - 0.18 11.3 0.6 0.33 10.4 0.6 1.6 1 1 0 1 1 1 0 NAD dependent epimerase/dehydratase family SIS_2 PF13580.6 AHV91831.1 - 4e-37 127.3 0.4 4.9e-37 127.0 0.4 1.1 1 0 0 1 1 1 1 SIS domain SIS PF01380.22 AHV91831.1 - 1.6e-07 31.2 0.1 6.6e-07 29.2 0.0 1.9 2 0 0 2 2 2 1 SIS domain Sirohm_synth_M PF14824.6 AHV91831.1 - 0.04 13.4 0.1 0.07 12.6 0.1 1.3 1 0 0 1 1 1 0 Sirohaem biosynthesis protein central MCPsignal PF00015.21 AHV91832.1 - 8.5e-45 152.6 17.2 1.6e-44 151.8 17.2 1.4 1 0 0 1 1 1 1 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS_3 PF08447.12 AHV91832.1 - 2.9e-26 91.6 0.3 2.1e-12 47.2 0.0 2.7 3 0 0 3 3 3 2 PAS fold PAS_4 PF08448.10 AHV91832.1 - 9.3e-25 87.0 0.5 9.9e-12 45.1 0.0 2.8 3 0 0 3 3 3 2 PAS fold PAS_9 PF13426.7 AHV91832.1 - 3.1e-22 78.8 0.0 5.6e-10 39.4 0.0 2.6 2 0 0 2 2 2 2 PAS domain PAS PF00989.25 AHV91832.1 - 5.5e-17 61.8 0.0 1.5e-07 31.4 0.0 2.6 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.7 AHV91832.1 - 6.3e-05 22.9 0.1 0.014 15.5 0.0 2.6 2 0 0 2 2 2 1 PAS domain RF-1 PF00472.20 AHV91832.1 - 0.037 14.0 1.9 0.081 12.9 1.9 1.6 1 0 0 1 1 1 0 RF-1 domain RIFIN PF02009.16 AHV91832.1 - 1.2 9.0 4.6 0.38 10.6 1.4 1.6 1 1 1 2 2 2 0 Rifin Redoxin PF08534.10 AHV91833.1 - 2.1e-34 118.3 0.0 2.4e-34 118.1 0.0 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA PF00578.21 AHV91833.1 - 2.5e-09 37.1 0.0 2.9e-09 36.9 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family HTH_18 PF12833.7 AHV91834.1 - 2.4e-19 69.4 0.1 2.4e-19 69.4 0.1 2.1 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_AraC PF00165.23 AHV91834.1 - 3.8e-08 33.2 0.0 0.0036 17.3 0.0 2.3 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family AraC_binding PF02311.19 AHV91834.1 - 5.7e-07 29.5 0.0 1.1e-06 28.6 0.0 1.5 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_2 PF07883.11 AHV91834.1 - 0.00013 21.7 0.0 0.0002 21.0 0.0 1.3 1 0 0 1 1 1 1 Cupin domain HTH_28 PF13518.6 AHV91834.1 - 0.057 13.5 4.0 2.2 8.5 0.1 2.9 2 1 0 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.6 AHV91834.1 - 0.17 11.7 7.0 1.1 9.2 0.1 3.4 3 0 0 3 3 3 0 Homeodomain-like domain DUF1178 PF06676.11 AHV91835.1 - 2e-46 158.1 0.0 3.2e-46 157.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1178) Zn-ribbon_8 PF09723.10 AHV91835.1 - 0.018 15.1 0.1 0.045 13.9 0.1 1.7 1 1 0 1 1 1 0 Zinc ribbon domain Mg_chelatase PF01078.21 AHV91836.1 - 6.9e-87 290.2 0.0 9.7e-87 289.7 0.0 1.2 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI ChlI PF13541.6 AHV91836.1 - 6.8e-28 96.9 0.0 1.1e-27 96.3 0.0 1.4 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase Mg_chelatase_C PF13335.6 AHV91836.1 - 1.5e-25 89.7 2.9 3.7e-25 88.4 2.9 1.7 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI C-terminal MCM PF00493.23 AHV91836.1 - 8.4e-09 34.8 0.0 2.3e-07 30.2 0.0 2.1 2 0 0 2 2 2 1 MCM P-loop domain AAA_5 PF07728.14 AHV91836.1 - 6.7e-08 32.6 0.0 0.012 15.6 0.0 2.8 3 0 0 3 3 3 2 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.26 AHV91836.1 - 1e-05 25.3 0.0 6.9e-05 22.6 0.0 2.1 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_33 PF13671.6 AHV91836.1 - 0.0018 18.4 0.2 0.0066 16.6 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 AHV91836.1 - 0.0046 17.2 0.0 0.013 15.7 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 AHV91836.1 - 0.039 14.3 2.6 0.14 12.5 0.0 2.9 4 0 0 4 4 4 0 AAA ATPase domain Sigma54_activ_2 PF14532.6 AHV91836.1 - 0.063 13.4 0.0 5.6 7.1 0.0 2.3 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA PF00004.29 AHV91836.1 - 0.086 13.3 0.0 0.67 10.4 0.0 2.1 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.17 AHV91836.1 - 0.17 11.6 0.4 0.74 9.5 0.2 2.0 2 1 0 2 2 2 0 IstB-like ATP binding protein BPD_transp_2 PF02653.16 AHV91837.1 - 8e-39 133.4 36.5 9.6e-39 133.2 36.5 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component PsbX PF06596.11 AHV91837.1 - 0.056 13.5 0.8 0.056 13.5 0.8 3.3 4 1 0 4 4 4 0 Photosystem II reaction centre X protein (PsbX) tRNA-synt_2 PF00152.20 AHV91838.1 - 7.5e-107 357.0 0.0 1e-106 356.6 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) GAD PF02938.14 AHV91838.1 - 4.4e-27 94.1 0.2 1e-26 93.0 0.2 1.7 1 0 0 1 1 1 1 GAD domain tRNA_anti-codon PF01336.25 AHV91838.1 - 1.2e-16 60.4 0.0 2.2e-16 59.6 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2b PF00587.25 AHV91838.1 - 0.0022 18.0 0.0 0.0031 17.5 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_2d PF01409.20 AHV91838.1 - 0.25 10.8 4.4 0.25 10.8 0.2 2.6 4 0 0 4 4 4 0 tRNA synthetases class II core domain (F) Ubie_methyltran PF01209.18 AHV91839.1 - 3.1e-84 282.0 0.0 3.7e-84 281.7 0.0 1.0 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.6 AHV91839.1 - 1.1e-21 77.3 0.0 2.3e-21 76.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 AHV91839.1 - 4.5e-19 68.9 0.0 9.8e-19 67.8 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 AHV91839.1 - 1.3e-16 60.8 0.0 1.8e-16 60.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 AHV91839.1 - 9.6e-12 45.0 0.0 1.3e-11 44.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 AHV91839.1 - 3.2e-09 37.4 0.0 5.7e-09 36.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.15 AHV91839.1 - 0.00077 19.4 0.0 0.0015 18.4 0.0 1.4 1 0 0 1 1 1 1 Hypothetical methyltransferase MTS PF05175.14 AHV91839.1 - 0.0017 17.9 0.0 0.0032 17.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.19 AHV91839.1 - 0.0096 15.7 0.0 0.019 14.7 0.0 1.5 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CMAS PF02353.20 AHV91839.1 - 0.018 14.3 0.0 0.045 13.0 0.0 1.5 1 1 1 2 2 2 0 Mycolic acid cyclopropane synthetase Methyltransf_29 PF03141.16 AHV91839.1 - 0.021 13.4 0.0 0.03 12.9 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase MetW PF07021.12 AHV91839.1 - 0.042 13.4 0.0 0.082 12.5 0.0 1.4 1 1 0 1 1 1 0 Methionine biosynthesis protein MetW GCD14 PF08704.10 AHV91839.1 - 0.12 12.0 0.0 0.38 10.4 0.0 1.6 2 0 0 2 2 2 0 tRNA methyltransferase complex GCD14 subunit CopB PF05275.11 AHV91840.1 - 0.027 14.1 0.1 0.061 12.9 0.1 1.5 1 0 0 1 1 1 0 Copper resistance protein B precursor (CopB) GSDH PF07995.11 AHV91841.1 - 8.1e-137 456.0 0.0 9.3e-137 455.8 0.0 1.0 1 0 0 1 1 1 1 Glucose / Sorbosone dehydrogenase NHL PF01436.21 AHV91841.1 - 0.00018 21.3 0.1 22 5.3 0.0 4.5 4 0 0 4 4 4 2 NHL repeat DUF4781 PF16013.5 AHV91841.1 - 0.023 13.5 0.2 0.034 13.0 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4781) BAT PF15915.5 AHV91841.1 - 0.03 14.2 0.0 0.059 13.2 0.0 1.4 1 0 0 1 1 1 0 GAF and HTH_10 associated domain Cytochrome_B PF00033.19 AHV91842.1 - 9.3e-68 227.8 15.1 9.3e-68 227.8 15.1 2.0 2 1 1 3 3 3 1 Cytochrome b/b6/petB Cytochrom_B_N_2 PF13631.6 AHV91842.1 - 5.3e-45 153.5 12.3 2.3e-44 151.4 4.0 3.1 3 0 0 3 3 3 2 Cytochrome b(N-terminal)/b6/petB Cytochrom_B_C PF00032.17 AHV91842.1 - 2.6e-43 146.5 3.9 2.6e-43 146.5 3.9 4.2 3 2 0 3 3 3 1 Cytochrome b(C-terminal)/b6/petD VWA_CoxE PF05762.14 AHV91843.1 - 1.5e-06 27.8 0.3 2.6e-06 27.0 0.3 1.3 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein DUF3649 PF12365.8 AHV91843.1 - 0.76 9.5 4.6 2.4 8.0 4.6 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF3649) HAD_2 PF13419.6 AHV91844.1 - 1e-31 110.4 0.0 1.2e-31 110.1 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 AHV91844.1 - 1.1e-20 74.8 0.1 2.6e-20 73.6 0.1 1.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 AHV91844.1 - 4.3e-09 37.0 0.2 5.8e-09 36.6 0.2 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 AHV91844.1 - 1.9e-08 34.3 0.1 3.6e-08 33.3 0.1 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase_3 PF08282.12 AHV91844.1 - 0.00031 20.6 0.0 0.29 10.9 0.0 3.0 3 0 0 3 3 3 2 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 AHV91844.1 - 0.0021 18.2 0.0 0.017 15.2 0.0 2.4 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase SelR PF01641.18 AHV91845.1 - 4.6e-54 181.7 0.0 5.2e-54 181.5 0.0 1.0 1 0 0 1 1 1 1 SelR domain Yippee-Mis18 PF03226.14 AHV91845.1 - 0.0059 16.8 0.0 0.14 12.4 0.0 2.0 2 0 0 2 2 2 1 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly Zn_ribbon_SprT PF17283.2 AHV91845.1 - 0.0062 16.4 0.3 0.02 14.8 0.3 1.9 1 1 0 1 1 1 1 SprT-like zinc ribbon domain Ribosomal_L19 PF01245.20 AHV91846.1 - 6.5e-45 151.6 2.3 7.2e-45 151.5 2.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L19 S1 PF00575.23 AHV91846.1 - 0.042 14.2 0.3 0.093 13.1 0.1 1.7 1 1 1 2 2 2 0 S1 RNA binding domain MucB_RseB PF03888.14 AHV91846.1 - 0.089 12.3 0.0 0.11 12.0 0.0 1.2 1 0 0 1 1 1 0 MucB/RseB N-terminal domain Aminotran_5 PF00266.19 AHV91847.1 - 2.8e-90 302.9 0.0 3.5e-90 302.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 AHV91847.1 - 3.1e-08 33.2 0.3 4.1e-08 32.9 0.3 1.1 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 AHV91847.1 - 4.8e-08 32.7 0.2 8.2e-08 31.9 0.2 1.4 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 AHV91847.1 - 7e-07 28.1 0.1 1.2e-06 27.4 0.1 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.21 AHV91847.1 - 2.1e-06 27.1 0.0 2.5e-06 26.9 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II Pyridoxal_deC PF00282.19 AHV91847.1 - 0.002 16.9 0.0 0.0031 16.3 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain B12-binding PF02310.19 AHV91847.1 - 0.002 18.1 0.1 0.014 15.5 0.0 2.2 1 1 1 2 2 2 1 B12 binding domain bPH_5 PF10882.8 AHV91847.1 - 0.13 12.3 0.0 0.92 9.6 0.0 2.3 2 0 0 2 2 2 0 Bacterial PH domain Aminotran_1_2 PF00155.21 AHV91848.1 - 1.4e-59 202.1 0.0 1.6e-59 202.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 AHV91848.1 - 3.9e-07 29.7 0.1 6.2e-07 29.1 0.1 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Alliinase_C PF04864.13 AHV91848.1 - 0.011 14.6 0.0 0.015 14.2 0.0 1.1 1 0 0 1 1 1 0 Allinase PBP PF01161.20 AHV91849.1 - 3e-20 72.9 0.1 3.3e-20 72.7 0.1 1.0 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein PLDc_2 PF13091.6 AHV91850.1 - 8.3e-41 139.0 0.0 2.9e-24 85.5 0.0 2.1 2 0 0 2 2 2 2 PLD-like domain PLDc PF00614.22 AHV91850.1 - 1.3e-09 37.8 4.2 5.5e-06 26.3 0.2 2.7 3 0 0 3 3 3 2 Phospholipase D Active site motif Regulator_TrmB PF11495.8 AHV91850.1 - 0.0012 18.1 0.0 0.22 10.7 0.0 2.2 2 0 0 2 2 2 2 Archaeal transcriptional regulator TrmB MarR PF01047.22 AHV91851.1 - 9.2e-13 47.9 0.1 1.5e-12 47.3 0.1 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 AHV91851.1 - 5.3e-09 35.8 0.0 8.6e-09 35.2 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.6 AHV91851.1 - 5.3e-07 29.7 0.0 8.6e-07 29.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_27 PF13463.6 AHV91851.1 - 1.7e-06 28.4 0.1 2.7e-06 27.8 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_IclR PF09339.10 AHV91851.1 - 9.9e-05 22.1 0.0 0.00034 20.4 0.0 1.8 2 0 0 2 2 2 1 IclR helix-turn-helix domain PadR PF03551.14 AHV91851.1 - 0.00049 20.0 0.1 0.0015 18.5 0.0 1.8 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family HxlR PF01638.17 AHV91851.1 - 0.054 13.4 0.5 0.12 12.3 0.1 1.8 2 1 0 2 2 2 0 HxlR-like helix-turn-helix RPA_C PF08784.11 AHV91851.1 - 0.06 14.0 0.0 0.11 13.2 0.0 1.3 1 0 0 1 1 1 0 Replication protein A C terminal B-block_TFIIIC PF04182.12 AHV91851.1 - 0.13 12.4 0.0 0.27 11.4 0.0 1.5 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC EAL PF00563.20 AHV91852.1 - 2.9e-39 135.0 0.0 3.2e-39 134.9 0.0 1.0 1 0 0 1 1 1 1 EAL domain RibD_C PF01872.17 AHV91853.1 - 7.9e-44 149.9 0.1 1.1e-43 149.4 0.1 1.2 1 0 0 1 1 1 1 RibD C-terminal domain dCMP_cyt_deam_1 PF00383.23 AHV91853.1 - 4.6e-17 61.7 0.0 1e-16 60.6 0.0 1.6 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region MafB19-deam PF14437.6 AHV91853.1 - 5.3e-09 36.0 0.0 8.1e-09 35.4 0.0 1.3 1 0 0 1 1 1 1 MafB19-like deaminase Attacin_N PF03768.15 AHV91853.1 - 0.034 14.3 0.2 0.1 12.7 0.2 1.8 1 0 0 1 1 1 0 Attacin, N-terminal region UPF0114 PF03350.16 AHV91854.1 - 9.8e-41 138.7 4.5 9.8e-41 138.7 4.5 1.4 2 0 0 2 2 2 1 Uncharacterized protein family, UPF0114 Wzy_C PF04932.15 AHV91854.1 - 0.0099 15.5 0.0 0.017 14.7 0.0 1.3 1 1 0 1 1 1 1 O-Antigen ligase rve_3 PF13683.6 AHV91855.1 - 3.4e-31 106.8 0.0 7.8e-31 105.7 0.0 1.6 2 0 0 2 2 2 1 Integrase core domain rve PF00665.26 AHV91855.1 - 5.5e-24 84.7 0.0 9.5e-24 83.9 0.0 1.3 1 0 0 1 1 1 1 Integrase core domain rve_2 PF13333.6 AHV91855.1 - 6.9e-07 29.4 0.0 1.2e-06 28.6 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AHV91855.1 - 0.0008 19.6 0.0 0.0012 19.1 0.0 1.4 1 0 0 1 1 1 1 DDE domain SIR2 PF02146.17 AHV91856.1 - 8.5e-45 152.8 0.0 1e-44 152.6 0.0 1.1 1 0 0 1 1 1 1 Sir2 family TauE PF01925.19 AHV91857.1 - 2.1e-15 57.0 33.8 1.4e-12 47.8 33.8 2.0 1 1 0 1 1 1 1 Sulfite exporter TauE/SafE BCCT PF02028.17 AHV91858.1 - 2.4e-96 323.1 26.1 2.8e-96 322.9 26.1 1.0 1 0 0 1 1 1 1 BCCT, betaine/carnitine/choline family transporter Ipi1_N PF12333.8 AHV91858.1 - 0.062 13.9 0.1 0.17 12.5 0.1 1.7 1 0 0 1 1 1 0 Rix1 complex component involved in 60S ribosome maturation rve PF00665.26 AHV91859.1 - 9.1e-36 122.7 0.2 2.4e-35 121.3 0.1 1.7 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 AHV91859.1 - 5.9e-14 51.9 1.5 4.2e-13 49.2 1.0 2.4 2 0 0 2 2 2 1 HTH-like domain rve_2 PF13333.6 AHV91859.1 - 2.7e-12 46.7 0.9 4.2e-12 46.0 0.9 1.3 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.6 AHV91859.1 - 2.1e-11 43.4 0.2 4e-11 42.5 0.2 1.5 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AHV91859.1 - 1.2e-07 32.1 0.2 1.6e-07 31.6 0.2 1.2 1 0 0 1 1 1 1 DDE domain HTH_Tnp_1 PF01527.20 AHV91859.1 - 0.0021 18.3 0.4 0.0072 16.6 0.0 2.0 2 0 0 2 2 2 1 Transposase Iron_transport PF10634.9 AHV91860.1 - 8.1e-70 233.8 0.4 9.4e-70 233.6 0.4 1.0 1 0 0 1 1 1 1 Fe2+ transport protein ribosomal_L24 PF17136.4 AHV91861.1 - 1.6e-24 86.1 1.1 2.2e-24 85.6 1.1 1.2 1 0 0 1 1 1 1 Ribosomal proteins 50S L24/mitochondrial 39S L24 Pilin_PilX PF11530.8 AHV91861.1 - 0.025 14.5 0.1 0.032 14.2 0.1 1.1 1 0 0 1 1 1 0 Minor type IV pilin, PilX DUF2835 PF11197.8 AHV91861.1 - 0.15 11.9 0.0 0.22 11.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2835) DUF2642 PF10842.8 AHV91861.1 - 0.7 9.8 4.3 0.33 10.8 0.9 2.1 2 1 1 3 3 3 0 Protein of unknown function (DUF2642) HI0933_like PF03486.14 AHV91862.1 - 2.4e-133 444.8 0.0 2.7e-133 444.6 0.0 1.0 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox_3 PF13738.6 AHV91862.1 - 4.6e-09 36.0 0.0 0.0017 17.7 0.0 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 AHV91862.1 - 3.6e-07 29.7 1.5 0.0002 20.7 1.3 2.4 2 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 AHV91862.1 - 4.3e-07 29.4 3.3 4.3e-07 29.4 3.3 2.6 2 1 0 2 2 2 1 FAD binding domain DAO PF01266.24 AHV91862.1 - 3e-06 27.1 8.5 1.2e-05 25.0 5.1 2.7 2 1 1 3 3 3 2 FAD dependent oxidoreductase GIDA PF01134.22 AHV91862.1 - 3.9e-06 26.2 3.1 0.00084 18.5 1.7 2.1 2 0 0 2 2 2 2 Glucose inhibited division protein A NAD_binding_8 PF13450.6 AHV91862.1 - 5.3e-06 26.6 1.9 1.9e-05 24.8 1.9 2.0 1 1 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 AHV91862.1 - 4.4e-05 22.9 0.1 7.2e-05 22.2 0.0 1.5 2 0 0 2 2 2 1 FAD binding domain FAD_oxidored PF12831.7 AHV91862.1 - 6.6e-05 22.4 0.2 9.1e-05 22.0 0.2 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase Lycopene_cycl PF05834.12 AHV91862.1 - 7.4e-05 22.0 0.6 0.0026 16.9 0.6 2.0 2 0 0 2 2 2 1 Lycopene cyclase protein Thi4 PF01946.17 AHV91862.1 - 0.0047 16.2 0.2 0.0096 15.2 0.2 1.6 1 0 0 1 1 1 1 Thi4 family 3HCDH_N PF02737.18 AHV91862.1 - 0.0053 16.7 1.4 0.0085 16.0 1.4 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_9 PF13454.6 AHV91862.1 - 0.0064 16.5 0.0 0.021 14.8 0.0 1.9 1 1 0 1 1 1 1 FAD-NAD(P)-binding Pyr_redox PF00070.27 AHV91862.1 - 0.0087 16.6 0.6 0.021 15.4 0.6 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 AHV91862.1 - 0.012 14.9 0.1 0.012 14.9 0.1 1.8 3 0 0 3 3 3 0 Alanine dehydrogenase/PNT, C-terminal domain UDPG_MGDP_dh_N PF03721.14 AHV91862.1 - 0.047 13.3 0.2 0.069 12.7 0.2 1.2 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_Gly3P_dh_N PF01210.23 AHV91862.1 - 0.077 13.0 0.1 0.15 12.0 0.1 1.5 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.16 AHV91862.1 - 0.11 12.1 0.6 0.19 11.4 0.6 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA adh_short_C2 PF13561.6 AHV91863.1 - 1.6e-09 37.7 0.1 1.7e-09 37.6 0.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase Thioredoxin PF00085.20 AHV91864.1 - 4.3e-09 36.3 0.0 5.5e-09 35.9 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_7 PF13899.6 AHV91864.1 - 0.0048 17.1 0.4 0.0082 16.3 0.4 1.4 1 1 0 1 1 1 1 Thioredoxin-like RNase_T PF00929.24 AHV91865.1 - 1.1e-23 84.5 0.0 1.3e-23 84.4 0.0 1.0 1 0 0 1 1 1 1 Exonuclease DNA_pol_A_exo1 PF01612.20 AHV91865.1 - 0.18 11.5 0.0 0.31 10.7 0.0 1.4 1 1 0 1 1 1 0 3'-5' exonuclease PfkB PF00294.24 AHV91866.1 - 6.3e-44 150.5 0.0 7.8e-44 150.2 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase DUF2953 PF11167.8 AHV91866.1 - 0.21 11.7 0.7 0.76 9.9 0.7 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2953) DPBB_1 PF03330.18 AHV91867.1 - 8e-24 83.7 0.0 1.5e-23 82.9 0.0 1.5 1 0 0 1 1 1 1 Lytic transglycolase SPOR PF05036.13 AHV91867.1 - 1.4e-14 54.2 0.0 3e-14 53.2 0.0 1.5 1 0 0 1 1 1 1 Sporulation related domain LZ_Tnp_IS481 PF13011.6 AHV91868.1 - 4.1e-22 78.5 2.4 9.2e-20 71.0 0.3 2.3 1 1 1 2 2 2 2 leucine-zipper of insertion element IS481 HTH_23 PF13384.6 AHV91868.1 - 4.2e-17 61.4 4.1 1.3e-07 31.2 0.9 2.3 2 0 0 2 2 2 2 Homeodomain-like domain HTH_28 PF13518.6 AHV91868.1 - 1e-15 57.6 1.9 3.9e-10 39.7 0.1 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_29 PF13551.6 AHV91868.1 - 7.7e-12 45.1 0.6 2.5e-06 27.4 0.0 2.3 2 0 0 2 2 2 2 Winged helix-turn helix HTH_32 PF13565.6 AHV91868.1 - 4.7e-11 43.1 0.8 8.9e-11 42.3 0.8 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_38 PF13936.6 AHV91868.1 - 2.2e-06 27.3 1.9 4.5e-06 26.3 1.2 1.9 2 1 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 AHV91868.1 - 2.9e-06 27.1 3.0 4.1e-05 23.4 1.1 2.3 2 0 0 2 2 2 1 MarR family HTH_Tnp_ISL3 PF13542.6 AHV91868.1 - 1.5e-05 24.3 2.0 0.0012 18.2 0.6 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 Sigma70_r4_2 PF08281.12 AHV91868.1 - 1.6e-05 24.5 0.1 0.0032 17.1 0.2 2.3 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 AHV91868.1 - 1.9e-05 24.1 0.1 0.00033 20.1 0.2 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_24 PF13412.6 AHV91868.1 - 0.00019 20.9 0.2 0.0012 18.4 0.3 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding YdaS_antitoxin PF15943.5 AHV91868.1 - 0.00026 20.8 0.2 0.13 12.1 0.0 2.5 2 0 0 2 2 2 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_Crp_2 PF13545.6 AHV91868.1 - 0.00026 20.9 0.5 0.0016 18.4 0.2 2.2 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_3 PF01381.22 AHV91868.1 - 0.00038 20.5 0.6 0.0076 16.3 0.3 2.4 2 0 0 2 2 2 1 Helix-turn-helix Trp_repressor PF01371.19 AHV91868.1 - 0.00038 20.5 0.3 0.0038 17.3 0.1 2.1 2 0 0 2 2 2 1 Trp repressor protein HTH_31 PF13560.6 AHV91868.1 - 0.00043 20.6 5.0 0.0014 18.9 2.8 2.7 2 1 0 2 2 2 1 Helix-turn-helix domain CENP-B_N PF04218.13 AHV91868.1 - 0.00044 19.8 0.1 0.88 9.2 0.1 2.3 2 0 0 2 2 2 2 CENP-B N-terminal DNA-binding domain SpoIIID PF12116.8 AHV91868.1 - 0.00084 19.4 0.0 0.46 10.6 0.0 2.2 2 0 0 2 2 2 1 Stage III sporulation protein D Fe_dep_repress PF01325.19 AHV91868.1 - 0.00092 19.4 0.0 0.017 15.3 0.0 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain LacI PF00356.21 AHV91868.1 - 0.0011 18.7 1.7 0.0027 17.5 0.7 2.1 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family HTH_5 PF01022.20 AHV91868.1 - 0.0014 18.5 0.0 0.23 11.3 0.0 2.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 AHV91868.1 - 0.0018 18.2 0.8 0.0079 16.1 0.6 2.0 2 0 0 2 2 2 1 HTH domain HTH_IclR PF09339.10 AHV91868.1 - 0.0027 17.5 1.6 0.02 14.7 0.6 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_Tnp_1 PF01527.20 AHV91868.1 - 0.0029 17.9 0.3 0.068 13.5 0.0 2.2 1 1 1 2 2 2 1 Transposase HTH_psq PF05225.16 AHV91868.1 - 0.0031 17.2 0.3 1.3 8.8 0.3 2.3 2 0 0 2 2 2 1 helix-turn-helix, Psq domain GntR PF00392.21 AHV91868.1 - 0.0032 17.1 0.6 0.28 10.8 0.3 2.3 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family RepB PF07506.11 AHV91868.1 - 0.0034 17.5 0.1 0.19 11.8 0.0 2.2 2 0 0 2 2 2 1 RepB plasmid partitioning protein HTH_35 PF13693.6 AHV91868.1 - 0.0043 17.1 0.7 0.034 14.2 0.5 2.2 1 1 1 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_10 PF04967.12 AHV91868.1 - 0.0043 16.8 0.1 0.028 14.2 0.2 2.0 2 0 0 2 2 2 1 HTH DNA binding domain HTH_17 PF12728.7 AHV91868.1 - 0.0044 17.2 0.1 4.6 7.5 0.1 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_AsnC-type PF13404.6 AHV91868.1 - 0.0048 16.7 2.8 0.03 14.2 1.4 2.5 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain UPF0175 PF03683.13 AHV91868.1 - 0.0066 16.1 0.4 0.056 13.2 0.1 2.2 2 1 1 3 3 2 1 Uncharacterised protein family (UPF0175) HTH_Tnp_4 PF13613.6 AHV91868.1 - 0.0095 15.7 0.1 0.038 13.7 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix of DDE superfamily endonuclease HTH_37 PF13744.6 AHV91868.1 - 0.013 15.4 0.1 0.075 13.0 0.1 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_30 PF13556.6 AHV91868.1 - 0.019 14.8 0.1 3.1 7.7 0.0 2.3 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain Crp PF00325.20 AHV91868.1 - 0.019 14.6 1.3 0.036 13.7 0.5 1.8 2 0 0 2 2 1 0 Bacterial regulatory proteins, crp family MarR PF01047.22 AHV91868.1 - 0.026 14.4 0.1 0.077 12.9 0.1 1.8 1 0 0 1 1 1 0 MarR family HTH_36 PF13730.6 AHV91868.1 - 0.03 14.3 0.1 0.32 11.0 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain P22_Cro PF14549.6 AHV91868.1 - 0.038 13.8 1.5 7 6.6 0.2 2.3 2 0 0 2 2 2 0 DNA-binding transcriptional regulator Cro DUF746 PF05344.11 AHV91868.1 - 0.051 13.4 0.1 0.77 9.6 0.0 2.2 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) HTH_DeoR PF08220.12 AHV91868.1 - 0.066 13.0 0.2 6.6 6.6 0.0 2.2 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain HTH_1 PF00126.27 AHV91868.1 - 0.068 13.1 3.0 2.7 8.0 0.5 2.4 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_8 PF02954.19 AHV91868.1 - 0.077 12.8 0.8 8.2 6.3 0.8 2.3 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family HTH_Tnp_Tc3_2 PF01498.18 AHV91868.1 - 0.082 13.2 1.6 0.25 11.6 0.1 2.5 2 0 0 2 2 2 0 Transposase Sigma54_DBD PF04552.13 AHV91868.1 - 0.089 12.5 0.1 0.16 11.7 0.1 1.4 1 0 0 1 1 1 0 Sigma-54, DNA binding domain MerR PF00376.23 AHV91868.1 - 0.1 12.4 1.5 10 6.0 0.0 2.7 3 0 0 3 3 2 0 MerR family regulatory protein DUF1804 PF08822.11 AHV91868.1 - 0.11 12.5 0.2 8.5 6.3 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1804) HTH_20 PF12840.7 AHV91868.1 - 0.11 12.6 1.0 15 5.7 0.2 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain Glyc_hyd_38C_2 PF18230.1 AHV91868.1 - 0.11 12.6 0.1 1.1 9.4 0.0 2.1 2 0 0 2 2 2 0 Glycosyl hydrolases family 38 C-terminal sub-domain TrmB PF01978.19 AHV91868.1 - 0.14 12.1 0.0 0.36 10.7 0.0 1.6 2 0 0 2 2 1 0 Sugar-specific transcriptional regulator TrmB DUF5353 PF17304.2 AHV91869.1 - 0.078 12.7 2.8 0.1 12.4 2.8 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5353) BatA PF07584.11 AHV91869.1 - 3.1 8.2 10.1 28 5.2 10.1 2.1 1 1 0 1 1 1 0 Aerotolerance regulator N-terminal DUF4131 PF13567.6 AHV91869.1 - 3.6 7.2 7.3 4.1 7.0 7.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) FimA PF16970.5 AHV91870.1 - 3.9e-34 117.9 4.6 5.8e-34 117.3 4.6 1.3 1 0 0 1 1 1 1 Type-1 fimbrial protein, A Fimbrial PF00419.20 AHV91870.1 - 1.1e-13 51.7 9.9 1.4e-13 51.4 9.9 1.1 1 0 0 1 1 1 1 Fimbrial protein Y2_Tnp PF04986.13 AHV91870.1 - 0.019 15.0 0.0 0.021 14.9 0.0 1.2 1 0 0 1 1 1 0 Putative transposase CMD PF02627.20 AHV91871.1 - 3.2e-17 62.4 1.4 3.3e-17 62.3 0.6 1.4 2 0 0 2 2 2 1 Carboxymuconolactone decarboxylase family Acetyltransf_8 PF13523.6 AHV91872.1 - 9.2e-45 151.9 0.2 1.2e-44 151.5 0.2 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 AHV91872.1 - 0.00016 22.3 0.0 0.00026 21.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Glu_synthase PF01645.17 AHV91873.1 - 3.4e-80 269.9 0.0 4.2e-80 269.6 0.0 1.1 1 0 0 1 1 1 1 Conserved region in glutamate synthase FMN_dh PF01070.18 AHV91873.1 - 0.018 14.1 0.5 0.032 13.3 0.2 1.5 2 0 0 2 2 2 0 FMN-dependent dehydrogenase PRODH PF18327.1 AHV91873.1 - 0.22 11.7 1.5 0.43 10.8 0.1 2.3 2 0 0 2 2 2 0 Proline utilization A proline dehydrogenase N-terminal domain Peptidase_M17 PF00883.21 AHV91874.1 - 4.4e-122 407.2 0.0 6.1e-122 406.8 0.0 1.2 1 0 0 1 1 1 1 Cytosol aminopeptidase family, catalytic domain Peptidase_M17_N PF02789.17 AHV91874.1 - 4.9e-20 71.6 3.1 1.4e-19 70.2 3.1 1.8 1 0 0 1 1 1 1 Cytosol aminopeptidase family, N-terminal domain Inositol_P PF00459.25 AHV91875.1 - 3.2e-59 200.7 0.0 3.5e-59 200.5 0.0 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase_glpX PF03320.13 AHV91875.1 - 0.017 14.0 0.0 0.024 13.5 0.0 1.3 1 0 0 1 1 1 0 Bacterial fructose-1,6-bisphosphatase, glpX-encoded DctP PF03480.13 AHV91877.1 - 5.1e-88 295.1 0.0 5.8e-88 294.9 0.0 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein, family 7 BPD_transp_1 PF00528.22 AHV91878.1 - 4.9e-26 91.6 5.6 4.9e-26 91.6 5.6 2.1 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component GpcrRhopsn4 PF10192.9 AHV91878.1 - 0.034 13.6 1.0 0.45 9.9 0.2 2.2 2 0 0 2 2 2 0 Rhodopsin-like GPCR transmembrane domain DUF1422 PF07226.11 AHV91878.1 - 3.7 7.6 6.0 0.67 10.0 0.2 2.8 4 0 0 4 4 4 0 Protein of unknown function (DUF1422) TDH PF03347.13 AHV91880.1 - 0.11 12.1 0.1 0.12 11.9 0.1 1.2 1 0 0 1 1 1 0 Vibrio thermostable direct hemolysin Fer4 PF00037.27 AHV91881.1 - 5.2e-08 32.4 22.2 7.9e-06 25.5 3.4 3.1 3 0 0 3 3 3 3 4Fe-4S binding domain Fer4_7 PF12838.7 AHV91881.1 - 2.1e-07 31.4 13.5 2.6e-06 27.9 14.6 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 AHV91881.1 - 2.3e-05 24.2 14.4 0.0016 18.4 3.4 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 AHV91881.1 - 8e-05 23.5 11.8 0.0027 18.6 4.9 2.1 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 AHV91881.1 - 0.00051 20.2 14.2 0.0013 18.8 14.4 1.6 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 AHV91881.1 - 0.00062 19.9 18.8 0.002 18.2 18.8 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 AHV91881.1 - 0.0011 19.0 15.5 0.013 15.6 14.2 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 AHV91881.1 - 0.0021 18.4 17.9 0.0025 18.2 2.6 2.9 2 1 0 2 2 2 1 4Fe-4S binding domain GF_recep_IV PF14843.6 AHV91881.1 - 0.0027 17.5 6.9 0.0035 17.1 6.9 1.2 1 0 0 1 1 1 1 Growth factor receptor domain IV Fer4_6 PF12837.7 AHV91881.1 - 0.24 11.5 21.3 2.1 8.6 8.3 2.5 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.7 AHV91881.1 - 1.5 10.0 20.5 3.2 8.9 4.9 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_8 PF13183.6 AHV91881.1 - 1.5 9.4 17.0 1.2e+03 0.0 17.0 2.3 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 AHV91881.1 - 7 7.3 17.2 0.3 11.6 4.9 2.5 1 1 2 3 3 3 0 4Fe-4S dicluster domain MlaD PF02470.20 AHV91882.1 - 0.0017 18.6 0.0 0.0025 18.1 0.0 1.3 1 0 0 1 1 1 1 MlaD protein Plug PF07715.15 AHV91883.1 - 1.4e-07 32.1 0.2 3.4e-07 30.8 0.2 1.7 1 0 0 1 1 1 1 TonB-dependent Receptor Plug Domain rve PF00665.26 AHV91884.1 - 2.9e-32 111.3 0.7 4.3e-32 110.8 0.1 1.6 2 0 0 2 2 1 1 Integrase core domain LZ_Tnp_IS481 PF13011.6 AHV91884.1 - 1.9e-21 76.3 2.6 1.1e-19 70.7 0.4 2.6 1 1 1 2 2 2 1 leucine-zipper of insertion element IS481 rve_3 PF13683.6 AHV91884.1 - 5.1e-19 67.8 2.7 1.2e-18 66.6 2.7 1.7 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.6 AHV91884.1 - 1.6e-16 59.6 4.2 1.2e-07 31.3 0.1 2.7 2 0 0 2 2 2 2 Homeodomain-like domain HTH_28 PF13518.6 AHV91884.1 - 5.9e-15 55.1 6.1 5.9e-11 42.3 0.1 3.4 4 0 0 4 4 3 2 Helix-turn-helix domain HTH_29 PF13551.6 AHV91884.1 - 1.8e-11 43.9 0.5 2.6e-06 27.4 0.0 2.6 2 0 0 2 2 2 2 Winged helix-turn helix HTH_32 PF13565.6 AHV91884.1 - 3.8e-10 40.2 0.7 3.8e-10 40.2 0.7 2.4 2 1 0 2 2 2 1 Homeodomain-like domain HTH_38 PF13936.6 AHV91884.1 - 5.4e-06 26.1 0.5 1.9e-05 24.3 0.4 2.1 2 0 0 2 2 1 1 Helix-turn-helix domain MarR_2 PF12802.7 AHV91884.1 - 3e-05 23.8 3.0 0.00037 20.3 1.1 2.6 2 0 0 2 2 2 1 MarR family HTH_31 PF13560.6 AHV91884.1 - 6.8e-05 23.1 1.5 0.0033 17.8 0.3 3.2 3 0 0 3 3 3 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 AHV91884.1 - 0.00013 21.4 0.1 0.0016 17.9 0.2 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 YdaS_antitoxin PF15943.5 AHV91884.1 - 0.0003 20.6 0.2 0.33 10.9 0.0 2.8 2 0 0 2 2 2 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT Sigma70_r4_2 PF08281.12 AHV91884.1 - 0.00043 19.9 0.1 0.092 12.4 0.2 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_Tnp_ISL3 PF13542.6 AHV91884.1 - 0.00057 19.3 8.6 0.0047 16.3 0.6 3.9 4 0 0 4 4 3 1 Helix-turn-helix domain of transposase family ISL3 HTH_24 PF13412.6 AHV91884.1 - 0.00062 19.3 0.2 0.0045 16.5 0.3 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_3 PF01381.22 AHV91884.1 - 0.00094 19.2 0.6 0.041 14.0 0.2 2.5 2 0 0 2 2 2 1 Helix-turn-helix LacI PF00356.21 AHV91884.1 - 0.0015 18.3 1.6 0.0044 16.8 0.6 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family Trp_repressor PF01371.19 AHV91884.1 - 0.0016 18.5 0.2 0.012 15.7 0.1 2.2 2 0 0 2 2 2 1 Trp repressor protein HTH_Crp_2 PF13545.6 AHV91884.1 - 0.002 18.1 0.3 0.013 15.4 0.1 2.3 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain SpoIIID PF12116.8 AHV91884.1 - 0.003 17.6 0.0 1.1 9.4 0.0 2.4 2 0 0 2 2 2 1 Stage III sporulation protein D HTH_Tnp_1 PF01527.20 AHV91884.1 - 0.0042 17.4 0.4 0.11 12.8 0.0 2.7 1 1 1 2 2 2 1 Transposase CENP-B_N PF04218.13 AHV91884.1 - 0.0046 16.6 0.0 3.7 7.2 0.0 2.3 2 0 0 2 2 2 1 CENP-B N-terminal DNA-binding domain Fe_dep_repress PF01325.19 AHV91884.1 - 0.0051 17.0 0.0 0.086 13.1 0.1 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.20 AHV91884.1 - 0.0056 16.5 0.0 2.2 8.2 0.0 2.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 AHV91884.1 - 0.0079 16.0 0.9 0.12 12.1 0.4 2.5 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_17 PF12728.7 AHV91884.1 - 0.0082 16.3 0.6 6.1 7.1 0.0 3.3 3 1 0 3 3 3 0 Helix-turn-helix domain HTH_AsnC-type PF13404.6 AHV91884.1 - 0.0095 15.7 2.3 0.13 12.1 0.9 2.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain GntR PF00392.21 AHV91884.1 - 0.013 15.1 0.8 1.2 8.8 0.3 2.6 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_psq PF05225.16 AHV91884.1 - 0.017 14.8 0.5 8.2 6.3 0.0 2.9 3 0 0 3 3 3 0 helix-turn-helix, Psq domain HTH_11 PF08279.12 AHV91884.1 - 0.026 14.5 0.5 0.15 12.0 0.5 2.2 2 0 0 2 2 2 0 HTH domain HTH_10 PF04967.12 AHV91884.1 - 0.027 14.2 0.0 0.17 11.7 0.1 2.2 2 0 0 2 2 2 0 HTH DNA binding domain RepB PF07506.11 AHV91884.1 - 0.03 14.4 0.1 3.7 7.6 0.1 2.3 1 1 1 2 2 2 0 RepB plasmid partitioning protein HTH_Tnp_4 PF13613.6 AHV91884.1 - 0.032 13.9 0.1 0.13 12.0 0.1 2.0 2 0 0 2 2 1 0 Helix-turn-helix of DDE superfamily endonuclease HTH_35 PF13693.6 AHV91884.1 - 0.034 14.2 1.2 0.3 11.2 0.4 2.7 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding HTH_30 PF13556.6 AHV91884.1 - 0.034 14.0 0.0 2 8.3 0.0 2.5 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain DDE_Tnp_IS240 PF13610.6 AHV91884.1 - 0.048 13.9 0.1 0.071 13.3 0.1 1.3 1 0 0 1 1 1 0 DDE domain P22_Cro PF14549.6 AHV91884.1 - 0.062 13.2 1.5 9.6 6.1 0.1 2.5 2 0 0 2 2 2 0 DNA-binding transcriptional regulator Cro HTH_37 PF13744.6 AHV91884.1 - 0.068 13.1 0.1 0.55 10.2 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain UPF0175 PF03683.13 AHV91884.1 - 0.073 12.8 0.3 0.56 10.0 0.1 2.4 2 1 0 2 2 2 0 Uncharacterised protein family (UPF0175) HTH_1 PF00126.27 AHV91884.1 - 0.098 12.6 1.9 7.3 6.6 0.2 2.6 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family Crp PF00325.20 AHV91884.1 - 0.11 12.2 2.8 0.16 11.6 0.4 2.6 3 0 0 3 3 3 0 Bacterial regulatory proteins, crp family DUF746 PF05344.11 AHV91884.1 - 0.11 12.3 0.1 0.98 9.3 0.0 2.3 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) MarR PF01047.22 AHV91884.1 - 0.11 12.4 0.1 0.36 10.8 0.1 1.8 2 0 0 2 2 1 0 MarR family KORA PF16509.5 AHV91884.1 - 0.14 12.5 0.1 14 6.0 0.0 3.0 3 0 0 3 3 3 0 TrfB plasmid transcriptional repressor HTH_36 PF13730.6 AHV91884.1 - 0.17 11.8 0.0 5.2 7.1 0.0 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_Tnp_Tc3_2 PF01498.18 AHV91884.1 - 0.38 11.0 2.7 0.63 10.3 0.1 2.6 3 0 0 3 3 1 0 Transposase MerR PF00376.23 AHV91884.1 - 0.77 9.6 6.8 3.2 7.6 0.0 3.6 4 0 0 4 4 2 0 MerR family regulatory protein Elong-fact-P_C PF09285.11 AHV91885.1 - 5.4e-24 83.7 0.1 1.3e-23 82.4 0.1 1.7 1 0 0 1 1 1 1 Elongation factor P, C-terminal EFP_N PF08207.12 AHV91885.1 - 1.9e-18 66.2 0.2 4.1e-18 65.1 0.2 1.6 1 0 0 1 1 1 1 Elongation factor P (EF-P) KOW-like domain EFP PF01132.20 AHV91885.1 - 2.9e-17 62.4 2.7 4.7e-17 61.8 2.7 1.4 1 0 0 1 1 1 1 Elongation factor P (EF-P) OB domain Cytochrom_C_asm PF01578.20 AHV91886.1 - 1.1e-42 146.2 26.4 1.1e-42 146.2 26.4 2.8 2 1 0 2 2 2 1 Cytochrome C assembly protein rve_3 PF13683.6 AHV91887.1 - 8.3e-32 108.8 0.1 4.5e-31 106.4 0.0 2.2 2 0 0 2 2 2 1 Integrase core domain rve PF00665.26 AHV91887.1 - 4.2e-25 88.2 0.0 1.1e-23 83.7 0.0 2.2 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 AHV91887.1 - 1.8e-11 44.0 8.6 3.6e-11 43.0 8.6 1.5 1 0 0 1 1 1 1 HTH-like domain rve_2 PF13333.6 AHV91887.1 - 5.8e-07 29.6 0.0 1.3e-06 28.5 0.0 1.6 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AHV91887.1 - 0.00041 20.6 0.0 0.00091 19.5 0.0 1.6 1 1 1 2 2 2 1 DDE domain Rhomboid_SP PF12595.8 AHV91887.1 - 0.0081 15.6 0.3 2.2 7.6 0.0 2.3 1 1 0 2 2 2 2 Rhomboid serine protease DUF1780 PF08682.10 AHV91887.1 - 0.13 11.9 1.0 1.6 8.3 0.3 2.2 2 0 0 2 2 2 0 Putative endonuclease, protein of unknown function (DUF1780) FCD PF07729.12 AHV91888.1 - 2.3e-19 70.0 19.8 2.3e-19 70.0 19.8 1.4 2 0 0 2 2 2 1 FCD domain GntR PF00392.21 AHV91888.1 - 3.6e-19 68.2 0.1 8.9e-19 66.9 0.1 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family Rrf2 PF02082.20 AHV91888.1 - 2.4e-05 24.6 0.4 6.7e-05 23.2 0.1 1.9 2 0 0 2 2 2 1 Transcriptional regulator MarR_2 PF12802.7 AHV91888.1 - 0.0051 16.7 0.2 0.021 14.7 0.2 2.1 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 AHV91888.1 - 0.0097 15.8 0.1 0.032 14.2 0.1 2.0 2 0 0 2 2 2 1 HTH domain HemN_C PF06969.16 AHV91888.1 - 0.089 12.9 0.4 12 6.0 0.0 2.7 3 1 0 3 3 3 0 HemN C-terminal domain Fe_dep_repress PF01325.19 AHV91888.1 - 0.11 12.7 0.0 0.3 11.3 0.0 1.7 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_24 PF13412.6 AHV91888.1 - 0.13 11.9 0.1 0.28 10.8 0.1 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_CodY PF08222.11 AHV91888.1 - 0.16 11.5 0.1 0.95 9.1 0.1 2.0 2 0 0 2 2 2 0 CodY helix-turn-helix domain ECH_2 PF16113.5 AHV91889.1 - 6.3e-115 384.2 0.0 7.2e-115 384.0 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_1 PF00378.20 AHV91889.1 - 2.2e-23 82.9 0.0 4.1e-23 82.0 0.0 1.4 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase Zn-ribbon_8 PF09723.10 AHV91890.1 - 1.5e-15 57.0 0.6 2.1e-15 56.5 0.6 1.2 1 0 0 1 1 1 1 Zinc ribbon domain zf-ribbon_3 PF13248.6 AHV91890.1 - 0.018 14.5 1.7 1.4 8.4 0.1 2.6 2 0 0 2 2 2 0 zinc-ribbon domain Ribosomal_L37e PF01907.19 AHV91890.1 - 0.062 13.5 2.6 4.2 7.6 0.1 2.2 1 1 1 2 2 2 0 Ribosomal protein L37e DUF1178 PF06676.11 AHV91890.1 - 0.064 13.6 0.2 0.088 13.2 0.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1178) DUF1451 PF07295.11 AHV91890.1 - 0.097 12.7 0.3 0.13 12.3 0.3 1.2 1 0 0 1 1 1 0 Zinc-ribbon containing domain HypA PF01155.19 AHV91890.1 - 0.12 12.4 0.2 0.15 12.1 0.2 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ACC PF17848.1 AHV91890.1 - 0.5 10.5 3.0 4.5 7.4 0.1 2.5 3 0 0 3 3 3 0 Acetyl-coA carboxylase zinc finger domain Rubredoxin_2 PF18073.1 AHV91890.1 - 0.7 9.7 4.9 2.7 7.8 0.5 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain UPF0547 PF10571.9 AHV91890.1 - 1.7 8.8 5.6 13 6.0 0.4 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 MS_channel PF00924.18 AHV91891.1 - 4.7e-42 143.9 0.0 1.9e-41 141.9 0.0 1.8 1 1 0 1 1 1 1 Mechanosensitive ion channel AIRS PF00586.24 AHV91892.1 - 2.4e-24 85.8 0.1 5.2e-24 84.7 0.1 1.6 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 AHV91892.1 - 2e-07 31.3 0.1 3.6e-07 30.4 0.1 1.4 1 1 0 1 1 1 1 AIR synthase related protein, C-terminal domain Aldedh PF00171.22 AHV91894.1 - 5.7e-26 91.0 2.3 4.8e-17 61.6 2.0 2.2 1 1 0 2 2 2 2 Aldehyde dehydrogenase family HTH_IclR PF09339.10 AHV91895.1 - 6.8e-13 48.2 1.3 8.1e-13 48.0 1.3 1.1 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 AHV91895.1 - 8.4e-10 38.4 0.5 1e-09 38.1 0.5 1.2 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 AHV91895.1 - 1.9e-08 34.0 0.0 2.5e-08 33.7 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 AHV91895.1 - 4.1e-08 33.4 0.1 5.3e-08 33.1 0.1 1.1 1 0 0 1 1 1 1 Transcriptional regulator HTH_5 PF01022.20 AHV91895.1 - 6e-08 32.4 0.0 9.4e-08 31.8 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_23 PF13384.6 AHV91895.1 - 8.9e-08 31.7 0.1 1.2e-07 31.3 0.1 1.2 1 0 0 1 1 1 1 Homeodomain-like domain HTH_24 PF13412.6 AHV91895.1 - 2.2e-06 27.1 0.1 2.7e-06 26.8 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 AHV91895.1 - 2.8e-06 27.3 0.1 3.6e-06 26.9 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 AHV91895.1 - 1.1e-05 25.3 0.0 1.3e-05 25.0 0.0 1.1 1 0 0 1 1 1 1 MarR family HTH_28 PF13518.6 AHV91895.1 - 1.3e-05 25.2 0.1 2.1e-05 24.6 0.1 1.4 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.6 AHV91895.1 - 2.1e-05 24.5 0.1 3e-05 23.9 0.0 1.4 1 1 0 1 1 1 1 Winged helix-turn helix HTH_7 PF02796.15 AHV91895.1 - 7.6e-05 22.7 0.0 0.00012 22.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_11 PF08279.12 AHV91895.1 - 0.00013 21.8 0.1 0.00016 21.6 0.1 1.1 1 0 0 1 1 1 1 HTH domain HTH_Crp_2 PF13545.6 AHV91895.1 - 0.00015 21.6 0.1 0.00021 21.2 0.1 1.3 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_36 PF13730.6 AHV91895.1 - 0.00029 20.7 0.0 0.0004 20.3 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain TetR_N PF00440.23 AHV91895.1 - 0.00034 20.3 0.0 0.00059 19.6 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family RPA_C PF08784.11 AHV91895.1 - 0.0014 19.3 0.0 0.0016 19.1 0.0 1.1 1 0 0 1 1 1 1 Replication protein A C terminal HTH_40 PF14493.6 AHV91895.1 - 0.0022 18.4 0.0 0.0026 18.2 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.6 AHV91895.1 - 0.0055 16.5 0.0 0.0098 15.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain RP-C PF03428.13 AHV91895.1 - 0.0056 16.4 0.2 0.012 15.2 0.0 1.5 2 0 0 2 2 2 1 Replication protein C N-terminal domain PadR PF03551.14 AHV91895.1 - 0.0056 16.6 0.0 0.0074 16.2 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_3 PF01381.22 AHV91895.1 - 0.0073 16.3 0.0 0.013 15.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_26 PF13443.6 AHV91895.1 - 0.011 16.2 0.0 0.018 15.5 0.0 1.3 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain TFIIE_alpha PF02002.17 AHV91895.1 - 0.016 15.1 0.0 0.019 14.8 0.0 1.1 1 0 0 1 1 1 0 TFIIE alpha subunit GntR PF00392.21 AHV91895.1 - 0.024 14.3 0.5 0.045 13.4 0.0 1.6 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_AsnC-type PF13404.6 AHV91895.1 - 0.028 14.3 0.2 0.069 13.0 0.2 1.8 1 1 1 2 2 2 0 AsnC-type helix-turn-helix domain HTH_27 PF13463.6 AHV91895.1 - 0.03 14.8 0.0 0.037 14.5 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_Tnp_ISL3 PF13542.6 AHV91895.1 - 0.035 13.5 0.0 0.059 12.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 Phage_AlpA PF05930.12 AHV91895.1 - 0.035 13.9 0.0 0.052 13.4 0.0 1.3 1 0 0 1 1 1 0 Prophage CP4-57 regulatory protein (AlpA) HTH_Tnp_1 PF01527.20 AHV91895.1 - 0.05 13.9 0.0 0.066 13.5 0.0 1.3 1 0 0 1 1 1 0 Transposase HTH_9 PF08221.11 AHV91895.1 - 0.06 13.4 0.0 0.084 13.0 0.0 1.3 1 1 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain TnsD PF15978.5 AHV91895.1 - 0.064 12.2 0.0 0.064 12.2 0.0 1.0 1 0 0 1 1 1 0 Tn7-like transposition protein D CENP-B_N PF04218.13 AHV91895.1 - 0.078 12.6 0.0 0.12 12.0 0.0 1.4 1 1 0 1 1 1 0 CENP-B N-terminal DNA-binding domain Sigma70_r4_2 PF08281.12 AHV91895.1 - 0.1 12.3 0.0 0.17 11.6 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_37 PF13744.6 AHV91895.1 - 0.12 12.4 0.0 0.13 12.2 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_18 PF12833.7 AHV91895.1 - 0.12 12.7 0.1 0.23 11.8 0.0 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain RNA_pol_Rpc34 PF05158.12 AHV91895.1 - 0.15 11.4 0.0 0.15 11.4 0.0 1.0 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit HTH_22 PF13309.6 AHV91895.1 - 0.15 12.1 0.0 0.24 11.5 0.0 1.4 1 1 0 1 1 1 0 HTH domain FUR PF01475.19 AHV91895.1 - 0.16 12.1 0.0 0.17 12.1 0.0 1.2 1 0 0 1 1 1 0 Ferric uptake regulator family DUF2250 PF10007.9 AHV91895.1 - 0.17 12.0 0.0 0.2 11.8 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Methyltransf_25 PF13649.6 AHV91896.1 - 1.9e-09 38.1 0.0 4e-09 37.0 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 AHV91896.1 - 2.6e-06 27.3 0.0 4.7e-06 26.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 AHV91896.1 - 4.9e-06 27.1 0.0 8.9e-06 26.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 AHV91896.1 - 0.00037 21.2 0.0 0.00075 20.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain DUF3683 PF12447.8 AHV91898.1 - 1.2e-52 176.8 0.0 1.9e-52 176.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3683) CCDC24 PF15669.5 AHV91898.1 - 0.027 14.4 0.4 0.034 14.0 0.4 1.2 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 24 family DUF2408 PF10303.9 AHV91898.1 - 0.052 14.1 0.0 0.16 12.6 0.0 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2408) FAD_binding_4 PF01565.23 AHV91898.1 - 0.11 12.2 0.0 0.18 11.5 0.0 1.3 1 0 0 1 1 1 0 FAD binding domain ACR_tran PF00873.19 AHV91899.1 - 2.4e-155 518.8 3.4 2.6e-155 518.7 3.4 1.0 1 0 0 1 1 1 1 AcrB/AcrD/AcrF family MMPL PF03176.15 AHV91899.1 - 1.8e-15 56.8 11.6 2.6e-15 56.2 11.6 1.2 1 0 0 1 1 1 1 MMPL family SecD_SecF PF02355.16 AHV91899.1 - 0.017 14.5 16.4 0.031 13.7 16.4 1.3 1 0 0 1 1 1 0 Protein export membrane protein SH3_18 PF18354.1 AHV91899.1 - 0.11 12.6 0.0 0.26 11.3 0.0 1.7 1 0 0 1 1 1 0 CarS bacterial SH3 domain Patched PF02460.18 AHV91899.1 - 9.9 4.1 15.8 13 3.7 15.8 1.1 1 0 0 1 1 1 0 Patched family BPD_transp_1 PF00528.22 AHV91900.1 - 5e-24 85.0 12.6 5e-24 85.0 12.6 1.6 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component AcrZ PF10766.9 AHV91900.1 - 0.21 11.2 3.5 3.1 7.4 0.1 3.2 3 0 0 3 3 3 0 Multidrug efflux pump-associated protein AcrZ DUF218 PF02698.17 AHV91901.1 - 6.8e-32 110.2 0.0 9.2e-32 109.8 0.0 1.2 1 0 0 1 1 1 1 DUF218 domain EI24 PF07264.11 AHV91901.1 - 0.002 18.4 0.8 0.0027 18.0 0.8 1.2 1 0 0 1 1 1 1 Etoposide-induced protein 2.4 (EI24) DUF4131 PF13567.6 AHV91901.1 - 9.8 5.8 7.5 15 5.2 7.5 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) ACR_tran PF00873.19 AHV91902.1 - 0 1039.5 17.8 0 1039.3 17.8 1.0 1 0 0 1 1 1 1 AcrB/AcrD/AcrF family SecD_SecF PF02355.16 AHV91902.1 - 1.9e-05 24.2 20.6 0.0017 17.7 8.2 2.3 2 0 0 2 2 2 2 Protein export membrane protein Methyltransf_4 PF02390.17 AHV91903.1 - 2.9e-11 43.1 0.0 3.1e-11 43.0 0.0 1.0 1 0 0 1 1 1 1 Putative methyltransferase DUF3470 PF11953.8 AHV91904.1 - 2.2e-18 65.9 0.2 2.3e-18 65.8 0.2 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF3470) DUF1992 PF09350.10 AHV91904.1 - 0.073 13.2 0.1 0.076 13.2 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1992) Aconitase PF00330.20 AHV91905.1 - 5.9e-149 497.0 0.0 7.7e-149 496.6 0.0 1.1 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.19 AHV91905.1 - 1.5e-28 99.7 0.0 2.5e-28 99.0 0.0 1.4 1 0 0 1 1 1 1 Aconitase C-terminal domain SecG PF03840.14 AHV91906.1 - 3.2e-21 75.2 7.7 4.5e-21 74.7 7.7 1.2 1 0 0 1 1 1 1 Preprotein translocase SecG subunit DDE_Tnp_ISL3 PF01610.17 AHV91907.1 - 4.5e-65 219.7 0.9 7.2e-65 219.1 0.2 1.6 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV91907.1 - 1.5e-11 43.5 0.1 3.6e-11 42.3 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV91907.1 - 5.1e-09 36.7 11.2 1.1e-08 35.6 11.2 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV91907.1 - 0.0056 16.7 0.2 0.016 15.3 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain SLT_L PF14718.6 AHV91907.1 - 0.0058 16.7 2.0 0.0069 16.5 0.5 1.8 2 0 0 2 2 2 1 Soluble lytic murein transglycosylase L domain NOB1_Zn_bind PF08772.11 AHV91907.1 - 0.016 15.4 0.2 1.2 9.3 0.0 2.6 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-IS66 PF13005.7 AHV91907.1 - 4.6 7.7 8.8 3.6 8.1 6.6 2.1 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 DctP PF03480.13 AHV91908.1 - 2e-83 280.1 0.0 2.5e-83 279.8 0.0 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein, family 7 dUTPase PF00692.19 AHV91909.1 - 4.5e-38 129.9 0.0 5.1e-38 129.7 0.0 1.0 1 0 0 1 1 1 1 dUTPase HupF_HypC PF01455.18 AHV91909.1 - 0.13 12.5 0.0 0.22 11.7 0.0 1.4 1 0 0 1 1 1 0 HupF/HypC family Abhydrolase_9 PF10081.9 AHV91910.1 - 7.6e-113 376.3 0.3 9.7e-113 376.0 0.3 1.1 1 0 0 1 1 1 1 Alpha/beta-hydrolase family Abhydrolase_9_N PF15420.6 AHV91910.1 - 9.1e-58 195.7 16.1 1.4e-57 195.1 16.1 1.3 1 0 0 1 1 1 1 Alpha/beta-hydrolase family N-terminus PRA-PH PF01503.17 AHV91911.1 - 2.6e-15 56.6 0.0 2.9e-15 56.5 0.0 1.1 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG PF03819.17 AHV91911.1 - 0.0017 18.5 0.0 0.0035 17.5 0.0 1.5 2 0 0 2 2 2 1 MazG nucleotide pyrophosphohydrolase domain Aldolase_II PF00596.21 AHV91913.1 - 1.3e-44 152.3 1.1 1.8e-44 151.9 1.1 1.2 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain Band_7 PF01145.25 AHV91914.1 - 8.4e-28 97.6 4.2 1.1e-27 97.2 4.2 1.1 1 0 0 1 1 1 1 SPFH domain / Band 7 family HflK_N PF12221.8 AHV91914.1 - 2.7e-13 49.7 11.5 2.7e-13 49.7 9.2 2.3 2 0 0 2 2 2 1 Bacterial membrane protein N terminal Band_7_1 PF13421.6 AHV91914.1 - 0.00024 20.9 0.1 0.004 16.9 0.0 2.1 2 0 0 2 2 2 1 SPFH domain-Band 7 family G_glu_transpept PF01019.21 AHV91916.1 - 0.16 10.7 0.0 0.16 10.7 0.0 1.0 1 0 0 1 1 1 0 Gamma-glutamyltranspeptidase TonB_dep_Rec PF00593.24 AHV91917.1 - 7.6e-51 174.4 13.4 8.6e-51 174.3 13.4 1.0 1 0 0 1 1 1 1 TonB dependent receptor OMP_b-brl_3 PF14905.6 AHV91917.1 - 2.4e-10 40.0 0.0 6.8e-10 38.5 0.0 1.6 1 1 0 1 1 1 1 Outer membrane protein beta-barrel family OMP_b-brl PF13505.6 AHV91917.1 - 0.011 15.8 3.5 0.071 13.2 0.3 2.6 1 1 0 2 2 2 0 Outer membrane protein beta-barrel domain Ribosomal_L1 PF00687.21 AHV91918.1 - 1e-50 172.4 0.0 1.3e-50 172.0 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family BPD_transp_2 PF02653.16 AHV91919.1 - 2.5e-38 131.8 38.6 3.4e-38 131.4 38.6 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component AMP-binding_C PF13193.6 AHV91920.1 - 2.9e-10 41.0 0.7 4.5e-10 40.4 0.7 1.3 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain EamA PF00892.20 AHV91921.1 - 1.8e-20 73.5 10.6 2.2e-20 73.3 10.6 1.0 1 0 0 1 1 1 1 EamA-like transporter family Aldedh PF00171.22 AHV91922.1 - 2.6e-57 194.4 0.3 3.1e-57 194.1 0.3 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family BPD_transp_1 PF00528.22 AHV91923.1 - 3e-22 79.3 11.3 3e-22 79.3 11.3 3.0 1 1 2 3 3 3 2 Binding-protein-dependent transport system inner membrane component GTA_holin_3TM PF11351.8 AHV91923.1 - 0.16 12.5 2.7 0.46 11.0 2.7 1.8 1 0 0 1 1 1 0 Holin of 3TMs, for gene-transfer release AMP-binding PF00501.28 AHV91925.1 - 5.3e-104 348.1 0.0 6.5e-104 347.9 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 AHV91925.1 - 1.6e-16 61.0 0.3 6.2e-16 59.1 0.1 2.2 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain LpxD PF04613.14 AHV91925.1 - 0.068 12.9 0.1 0.19 11.5 0.1 1.8 1 0 0 1 1 1 0 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD Inositol_P PF00459.25 AHV91926.1 - 8.1e-40 137.0 0.0 1e-39 136.7 0.0 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family PBSX_XtrA PF17356.2 AHV91926.1 - 0.096 12.6 0.0 0.17 11.8 0.0 1.3 1 0 0 1 1 1 0 Phage-like element PBSX protein XtrA AcetylCoA_hyd_C PF13336.6 AHV91927.1 - 8.3e-42 142.7 0.0 1.9e-41 141.6 0.0 1.6 2 0 0 2 2 2 1 Acetyl-CoA hydrolase/transferase C-terminal domain AcetylCoA_hydro PF02550.15 AHV91927.1 - 1.7e-31 109.8 0.1 5.6e-30 104.8 0.1 2.2 1 1 0 1 1 1 1 Acetyl-CoA hydrolase/transferase N-terminal domain CitF PF04223.12 AHV91927.1 - 5.6e-06 25.5 0.5 1.2e-05 24.4 0.1 1.6 2 0 0 2 2 2 1 Citrate lyase, alpha subunit (CitF) CoA_trans PF01144.23 AHV91927.1 - 0.00019 20.9 1.5 0.035 13.5 0.0 3.0 3 0 0 3 3 3 2 Coenzyme A transferase LUD_dom PF02589.15 AHV91927.1 - 0.0028 17.4 0.0 0.0061 16.3 0.0 1.6 1 0 0 1 1 1 1 LUD domain COX3 PF00510.18 AHV91928.1 - 1e-57 196.0 27.2 3.5e-57 194.2 27.2 1.6 1 1 0 1 1 1 1 Cytochrome c oxidase subunit III DUF1772 PF08592.11 AHV91928.1 - 2.4 8.5 11.9 2.5 8.4 0.7 2.6 3 0 0 3 3 3 0 Domain of unknown function (DUF1772) LysR_substrate PF03466.20 AHV91929.1 - 4e-25 88.4 6.7 5.4e-25 88.0 6.7 1.2 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 AHV91929.1 - 4.8e-21 74.5 3.1 7.5e-21 73.8 0.3 2.8 3 0 0 3 3 3 1 Bacterial regulatory helix-turn-helix protein, lysR family Fic_N PF13784.6 AHV91930.1 - 1.2e-21 76.5 0.1 2.1e-21 75.7 0.1 1.4 1 0 0 1 1 1 1 Fic/DOC family N-terminal Fic PF02661.18 AHV91930.1 - 6e-16 59.1 0.0 2.5e-15 57.2 0.0 2.0 2 0 0 2 2 2 1 Fic/DOC family TPR_21 PF09976.9 AHV91931.1 - 1e-56 191.7 10.5 1.2e-56 191.5 10.5 1.0 1 0 0 1 1 1 1 Tetratricopeptide repeat-like domain TPR_16 PF13432.6 AHV91931.1 - 0.0013 19.3 23.7 0.0057 17.3 9.8 3.2 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_14 PF13428.6 AHV91931.1 - 0.0021 18.7 20.1 0.49 11.3 4.2 4.4 3 1 1 4 4 4 3 Tetratricopeptide repeat TPR_1 PF00515.28 AHV91931.1 - 0.0048 16.7 3.9 0.43 10.5 0.1 3.2 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_2 PF07719.17 AHV91931.1 - 0.0085 16.1 13.4 0.0091 16.0 0.7 4.0 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_11 PF13414.6 AHV91931.1 - 0.019 14.6 0.5 0.019 14.6 0.5 3.2 3 0 0 3 3 3 0 TPR repeat TPR_19 PF14559.6 AHV91931.1 - 0.031 14.8 8.1 0.031 14.8 8.1 3.3 1 1 2 3 3 3 0 Tetratricopeptide repeat DUF3262 PF11660.8 AHV91931.1 - 0.43 11.0 4.5 0.84 10.1 4.5 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3262) DUF1206 PF06724.11 AHV91931.1 - 0.72 10.0 8.0 0.26 11.4 0.5 2.9 2 1 0 2 2 2 0 Domain of Unknown Function (DUF1206) TPR_6 PF13174.6 AHV91931.1 - 0.84 10.4 15.6 3.1 8.6 0.5 4.8 4 1 1 5 5 5 0 Tetratricopeptide repeat TPR_20 PF14561.6 AHV91931.1 - 2 8.8 9.3 4.1 7.8 5.9 3.0 2 1 1 3 3 3 0 Tetratricopeptide repeat TPR_4 PF07721.14 AHV91931.1 - 2.9 8.8 18.1 2.9 8.8 3.8 4.1 3 1 0 3 3 3 0 Tetratricopeptide repeat TPR_10 PF13374.6 AHV91931.1 - 6.7 6.7 14.9 2.9 7.9 0.2 4.1 4 1 0 4 4 4 0 Tetratricopeptide repeat Cyt_bd_oxida_I PF01654.17 AHV91932.1 - 3.9e-89 299.2 34.3 4.4e-89 299.0 34.3 1.0 1 0 0 1 1 1 1 Cytochrome bd terminal oxidase subunit I RR_TM4-6 PF06459.12 AHV91932.1 - 0.33 10.7 0.9 0.47 10.2 0.9 1.1 1 0 0 1 1 1 0 Ryanodine Receptor TM 4-6 P_C10 PF14974.6 AHV91933.1 - 0.1 12.7 0.1 0.13 12.4 0.1 1.1 1 0 0 1 1 1 0 Protein C10 oligo_HPY PF08352.12 AHV91934.1 - 7.9e-19 67.9 0.0 1.5e-18 67.0 0.0 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region ABC_tran PF00005.27 AHV91934.1 - 8.2e-14 52.3 0.0 1.2e-13 51.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 AHV91934.1 - 0.00012 22.1 0.0 0.00013 21.9 0.0 1.1 1 0 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system PapD_N PF00345.20 AHV91934.1 - 0.049 13.5 0.0 0.083 12.8 0.0 1.3 1 0 0 1 1 1 0 Pili and flagellar-assembly chaperone, PapD N-terminal domain SPOUT_MTase PF02590.17 AHV91935.1 - 4.4e-44 150.2 0.0 4.8e-44 150.0 0.0 1.0 1 0 0 1 1 1 1 Predicted SPOUT methyltransferase TauD PF02668.16 AHV91936.1 - 1.4e-63 215.2 0.2 1.6e-63 215.0 0.2 1.0 1 0 0 1 1 1 1 Taurine catabolism dioxygenase TauD, TfdA family SSF PF00474.17 AHV91937.1 - 4e-53 180.8 32.8 1.5e-31 109.7 16.5 3.2 3 0 0 3 3 3 3 Sodium:solute symporter family DUF2818 PF10993.8 AHV91937.1 - 0.049 14.2 0.4 0.049 14.2 0.4 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF2818) Sugarporin_N PF11471.8 AHV91937.1 - 0.33 10.9 2.8 0.45 10.5 0.3 2.7 2 0 0 2 2 2 0 Maltoporin periplasmic N-terminal extension Patatin PF01734.22 AHV91938.1 - 1.1e-17 65.0 1.5 5.1e-17 62.7 1.5 2.1 1 1 0 1 1 1 1 Patatin-like phospholipase HSP20 PF00011.21 AHV91939.1 - 2.6e-08 33.9 0.0 3.3e-08 33.6 0.0 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 AHV91939.1 - 0.0037 16.8 0.0 0.0098 15.4 0.0 1.7 1 1 0 1 1 1 1 HSP20-like domain found in ArsA AIRS_C PF02769.22 AHV91940.1 - 2.6e-26 92.6 1.5 3.6e-26 92.2 1.5 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 AHV91940.1 - 7.7e-19 68.2 1.0 2.4e-18 66.6 1.0 1.9 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain MFS_3 PF05977.13 AHV91941.1 - 2e-180 600.7 32.8 2.5e-180 600.3 32.8 1.0 1 0 0 1 1 1 1 Transmembrane secretion effector MFS_1 PF07690.16 AHV91941.1 - 3.2e-35 121.7 77.4 1.1e-29 103.5 43.1 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 AHV91941.1 - 0.16 10.8 24.9 0.047 12.6 9.2 3.1 2 1 1 3 3 3 0 MFS_1 like family MFS_2 PF13347.6 AHV91941.1 - 1.3 7.4 31.1 0.03 12.9 6.9 2.8 1 1 2 3 3 3 0 MFS/sugar transport protein Na_sulph_symp PF00939.19 AHV91942.1 - 5.8e-130 434.5 48.3 7e-130 434.2 48.3 1.0 1 0 0 1 1 1 1 Sodium:sulfate symporter transmembrane region CitMHS PF03600.16 AHV91942.1 - 1.1e-10 41.3 64.3 3.8e-07 29.6 32.3 2.9 1 1 2 3 3 3 2 Citrate transporter MutS_V PF00488.21 AHV91943.1 - 1.1e-79 266.8 0.0 1.7e-79 266.2 0.0 1.3 1 0 0 1 1 1 1 MutS domain V MutS_I PF01624.20 AHV91943.1 - 2.1e-39 134.2 0.0 3.7e-39 133.4 0.0 1.4 1 0 0 1 1 1 1 MutS domain I MutS_III PF05192.18 AHV91943.1 - 1.9e-34 119.6 2.1 3.8e-34 118.6 2.1 1.6 1 0 0 1 1 1 1 MutS domain III MutS_IV PF05190.18 AHV91943.1 - 1.1e-29 102.6 0.0 2.3e-29 101.6 0.0 1.5 1 0 0 1 1 1 1 MutS family domain IV MutS_II PF05188.17 AHV91943.1 - 1.6e-18 67.3 0.0 3.2e-18 66.3 0.0 1.5 1 0 0 1 1 1 1 MutS domain II AAA_PrkA PF08298.11 AHV91943.1 - 0.16 10.8 0.0 0.35 9.7 0.0 1.4 1 0 0 1 1 1 0 PrkA AAA domain EAL PF00563.20 AHV91945.1 - 1.2e-41 142.9 0.0 1.3e-41 142.7 0.0 1.0 1 0 0 1 1 1 1 EAL domain TetR_C_6 PF13977.6 AHV91945.1 - 0.047 13.9 0.3 0.13 12.5 0.3 1.7 2 0 0 2 2 2 0 BetI-type transcriptional repressor, C-terminal QueF_N PF14819.6 AHV91946.1 - 1.5e-44 150.8 0.0 3.2e-44 149.7 0.0 1.6 1 0 0 1 1 1 1 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term QueF PF14489.6 AHV91946.1 - 8.5e-31 106.0 0.0 9.2e-25 86.6 0.0 2.2 2 0 0 2 2 2 2 QueF-like protein GMP_synt_C PF00958.22 AHV91947.1 - 9.4e-42 141.0 0.0 2.2e-41 139.8 0.0 1.6 1 0 0 1 1 1 1 GMP synthase C terminal domain GATase PF00117.28 AHV91947.1 - 8.4e-35 120.3 0.0 1.4e-34 119.5 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase class-I NAD_synthase PF02540.17 AHV91947.1 - 1.6e-11 43.8 0.3 4.2e-08 32.6 0.1 2.2 2 0 0 2 2 2 2 NAD synthase Peptidase_C26 PF07722.13 AHV91947.1 - 1.3e-10 41.4 0.0 1.3e-09 38.2 0.0 2.3 1 1 1 2 2 2 1 Peptidase C26 tRNA_Me_trans PF03054.16 AHV91947.1 - 0.0001 21.2 0.1 0.00023 20.1 0.1 1.5 2 0 0 2 2 2 1 tRNA methyl transferase ATP_bind_3 PF01171.20 AHV91947.1 - 0.0015 18.3 0.0 0.0024 17.6 0.0 1.3 1 0 0 1 1 1 1 PP-loop family QueC PF06508.13 AHV91947.1 - 0.0016 18.0 0.0 0.019 14.4 0.0 2.1 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC Arginosuc_synth PF00764.19 AHV91947.1 - 0.016 14.5 0.1 0.022 14.1 0.1 1.2 1 0 0 1 1 1 0 Arginosuccinate synthase ThiI PF02568.14 AHV91947.1 - 0.066 12.8 0.1 0.13 11.8 0.1 1.5 1 0 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) Asn_synthase PF00733.21 AHV91947.1 - 0.069 12.8 0.1 0.12 12.0 0.1 1.3 1 0 0 1 1 1 0 Asparagine synthase PAPS_reduct PF01507.19 AHV91947.1 - 0.13 12.3 0.0 0.19 11.7 0.0 1.2 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family Acetyltransf_4 PF13420.7 AHV91948.1 - 7.4e-07 29.4 0.0 8e-07 29.3 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 AHV91948.1 - 0.0023 18.6 0.0 0.0031 18.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain COX4_pro PF03626.14 AHV91949.1 - 7.7e-18 64.7 12.1 1e-17 64.3 12.1 1.2 1 0 0 1 1 1 1 Prokaryotic Cytochrome C oxidase subunit IV DUF2157 PF09925.9 AHV91949.1 - 0.00072 19.4 1.0 0.00089 19.1 1.0 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2157) Per1 PF04080.13 AHV91949.1 - 0.015 15.0 5.6 0.019 14.7 5.6 1.1 1 0 0 1 1 1 0 Per1-like family MARVEL PF01284.23 AHV91949.1 - 0.034 14.2 7.4 0.056 13.5 7.4 1.3 1 1 0 1 1 1 0 Membrane-associating domain Trep_Strep PF09605.10 AHV91949.1 - 0.045 13.7 8.7 0.06 13.3 8.7 1.1 1 0 0 1 1 1 0 Hypothetical bacterial integral membrane protein (Trep_Strep) SID-1_RNA_chan PF13965.6 AHV91949.1 - 0.05 12.0 2.4 0.058 11.8 2.4 1.0 1 0 0 1 1 1 0 dsRNA-gated channel SID-1 ESSS PF10183.9 AHV91949.1 - 0.29 11.4 0.8 0.66 10.2 0.8 1.8 1 1 0 1 1 1 0 ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) RDD PF06271.12 AHV91949.1 - 9.9 6.4 12.4 1.5e+02 2.5 12.3 2.0 1 1 0 1 1 1 0 RDD family rve_3 PF13683.6 AHV91950.1 - 1.4e-31 108.0 0.1 4.5e-31 106.4 0.0 1.9 2 0 0 2 2 2 1 Integrase core domain rve PF00665.26 AHV91950.1 - 4.5e-25 88.2 0.0 1.1e-23 83.7 0.0 2.2 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 AHV91950.1 - 8.3e-12 45.1 8.6 1.7e-11 44.1 8.6 1.5 1 0 0 1 1 1 1 HTH-like domain rve_2 PF13333.6 AHV91950.1 - 5.8e-07 29.6 0.0 1.3e-06 28.5 0.0 1.6 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AHV91950.1 - 0.0004 20.6 0.0 0.00091 19.5 0.0 1.6 1 1 1 2 2 2 1 DDE domain Rhomboid_SP PF12595.8 AHV91950.1 - 0.058 12.8 0.1 2.1 7.7 0.0 2.3 1 1 0 2 2 2 0 Rhomboid serine protease DUF1780 PF08682.10 AHV91950.1 - 0.13 11.9 1.0 1.6 8.3 0.3 2.2 2 0 0 2 2 2 0 Putative endonuclease, protein of unknown function (DUF1780) Sigma70_r4_2 PF08281.12 AHV91951.1 - 3e-16 58.8 0.0 7e-16 57.6 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r2 PF04542.14 AHV91951.1 - 8.2e-10 38.3 3.7 1.5e-09 37.5 3.0 1.7 2 0 0 2 2 2 1 Sigma-70 region 2 Sigma70_r4 PF04545.16 AHV91951.1 - 1e-06 28.1 0.0 3.6e-06 26.4 0.0 1.9 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_ECF PF07638.11 AHV91951.1 - 1e-05 25.5 0.8 1.2e-05 25.3 0.8 1.1 1 0 0 1 1 1 1 ECF sigma factor HTH_38 PF13936.6 AHV91951.1 - 0.058 13.2 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain rve_3 PF13683.6 AHV91952.1 - 1.4e-31 108.0 0.1 4.5e-31 106.4 0.0 1.9 2 0 0 2 2 2 1 Integrase core domain rve PF00665.26 AHV91952.1 - 4.5e-25 88.2 0.0 1.1e-23 83.7 0.0 2.2 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 AHV91952.1 - 8.3e-12 45.1 8.6 1.7e-11 44.1 8.6 1.5 1 0 0 1 1 1 1 HTH-like domain rve_2 PF13333.6 AHV91952.1 - 5.8e-07 29.6 0.0 1.3e-06 28.5 0.0 1.6 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AHV91952.1 - 0.0004 20.6 0.0 0.00091 19.5 0.0 1.6 1 1 1 2 2 2 1 DDE domain Rhomboid_SP PF12595.8 AHV91952.1 - 0.058 12.8 0.1 2.1 7.7 0.0 2.3 1 1 0 2 2 2 0 Rhomboid serine protease DUF1780 PF08682.10 AHV91952.1 - 0.13 11.9 1.0 1.6 8.3 0.3 2.2 2 0 0 2 2 2 0 Putative endonuclease, protein of unknown function (DUF1780) DUF2201_N PF13203.6 AHV91953.1 - 0.0095 15.6 0.1 0.012 15.3 0.1 1.1 1 0 0 1 1 1 1 Putative metallopeptidase domain FGase PF05013.12 AHV91955.1 - 1.2e-53 182.5 0.0 1.5e-53 182.2 0.0 1.0 1 0 0 1 1 1 1 N-formylglutamate amidohydrolase AsmA PF05170.14 AHV91956.1 - 3.1e-57 194.8 7.8 8.9e-57 193.2 7.8 1.8 1 1 0 1 1 1 1 AsmA family AsmA_2 PF13502.6 AHV91956.1 - 2.7e-21 76.1 21.9 2.8e-20 72.9 7.0 4.2 4 1 0 4 4 4 3 AsmA-like C-terminal region DctA-YdbH PF11739.8 AHV91956.1 - 0.0033 17.2 2.5 0.11 12.2 0.5 3.2 2 1 0 2 2 2 1 Dicarboxylate transport Nsp3_PL2pro PF12124.8 AHV91956.1 - 0.041 13.7 0.0 0.92 9.3 0.0 3.1 3 0 0 3 3 3 0 Coronavirus polyprotein cleavage domain ECH_1 PF00378.20 AHV91957.1 - 2.9e-81 272.5 0.2 3.3e-81 272.3 0.2 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 AHV91957.1 - 2.8e-36 125.7 2.4 1.9e-33 116.4 0.9 2.0 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase Peptidase_S49 PF01343.18 AHV91957.1 - 0.0031 17.5 0.4 0.16 11.9 0.0 2.3 2 0 0 2 2 2 1 Peptidase family S49 PaaB PF06243.11 AHV91958.1 - 1.8e-39 133.8 0.0 2.1e-39 133.7 0.0 1.0 1 0 0 1 1 1 1 Phenylacetic acid degradation B FecR PF04773.13 AHV91959.1 - 1.8e-17 63.8 0.9 2.7e-17 63.2 0.9 1.3 1 0 0 1 1 1 1 FecR protein DUF4880 PF16220.5 AHV91959.1 - 3.4e-07 30.0 7.4 1.7e-06 27.8 7.4 2.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4880) DUF4974 PF16344.5 AHV91959.1 - 0.12 12.4 0.0 0.19 11.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4974) DUF1289 PF06945.13 AHV91960.1 - 1.6e-17 63.0 1.4 1.9e-17 62.8 1.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1289) CoA_transf_3 PF02515.17 AHV91961.1 - 8e-19 68.0 0.0 9e-19 67.8 0.0 1.0 1 0 0 1 1 1 1 CoA-transferase family III DeoC PF01791.9 AHV91961.1 - 0.0035 17.0 0.0 0.0035 17.0 0.0 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase BPD_transp_2 PF02653.16 AHV91962.1 - 2.4e-38 131.9 37.5 5.1e-38 130.8 37.5 1.4 1 1 0 1 1 1 1 Branched-chain amino acid transport system / permease component TPP_enzyme_C PF02775.21 AHV91963.1 - 1.1e-07 31.8 0.4 5.1e-06 26.3 0.5 2.4 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain MlaE PF02405.16 AHV91964.1 - 1.9e-74 249.9 16.2 3e-74 249.3 16.2 1.3 1 0 0 1 1 1 1 Permease MlaE ABC2_membrane PF01061.24 AHV91965.1 - 4.3e-17 62.2 15.2 4.3e-17 62.2 15.2 1.7 2 0 0 2 2 2 1 ABC-2 type transporter IPTL-CTERM PF18203.1 AHV91965.1 - 0.041 13.8 4.6 0.5 10.3 1.1 2.8 2 0 0 2 2 2 0 IPTL-CTERM motif DDE_Tnp_ISL3 PF01610.17 AHV91966.1 - 7.9e-65 218.9 1.2 1.1e-64 218.4 0.3 1.6 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV91966.1 - 1.4e-11 43.6 0.1 3.6e-11 42.3 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV91966.1 - 5.3e-09 36.6 11.2 1.1e-08 35.6 11.2 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV91966.1 - 0.0056 16.7 0.2 0.016 15.3 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain SLT_L PF14718.6 AHV91966.1 - 0.016 15.3 1.5 0.016 15.3 1.5 1.8 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain NOB1_Zn_bind PF08772.11 AHV91966.1 - 0.017 15.2 0.2 1.2 9.3 0.0 2.5 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-IS66 PF13005.7 AHV91966.1 - 8.2 6.9 9.6 3.6 8.1 6.6 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 BPD_transp_1 PF00528.22 AHV91967.1 - 1.1e-23 83.9 15.6 1.1e-23 83.9 15.6 1.5 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Colicin PF01024.19 AHV91967.1 - 0.0049 16.8 0.1 0.0049 16.8 0.1 2.0 2 0 0 2 2 2 1 Colicin pore forming domain Rnf-Nqr PF02508.14 AHV91967.1 - 1.1 9.2 12.1 0.11 12.5 2.8 2.9 2 2 1 3 3 3 0 Rnf-Nqr subunit, membrane protein ABC_tran PF00005.27 AHV91968.1 - 8.2e-33 113.8 0.0 1.2e-32 113.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 AHV91968.1 - 7.5e-11 42.4 0.1 1.6e-05 24.8 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 AHV91968.1 - 1e-08 34.9 0.0 1.3e-05 24.7 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 AHV91968.1 - 7.3e-05 23.1 0.1 0.0072 16.6 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 AHV91968.1 - 0.00017 21.3 0.0 0.00039 20.1 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 AHV91968.1 - 0.00078 19.9 0.1 0.001 19.5 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 AHV91968.1 - 0.0023 17.8 0.0 0.0059 16.5 0.0 1.6 2 0 0 2 2 2 1 RsgA GTPase AAA PF00004.29 AHV91968.1 - 0.0082 16.6 0.0 3.9 7.9 0.0 2.4 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 AHV91968.1 - 0.019 15.0 0.1 1.5 8.9 0.0 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_23 PF13476.6 AHV91968.1 - 0.033 14.7 0.0 0.066 13.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 AHV91968.1 - 0.044 13.9 0.0 0.1 12.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 AHV91968.1 - 0.045 13.7 0.0 0.096 12.6 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_18 PF13238.6 AHV91968.1 - 0.057 14.0 0.0 0.12 13.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain ABC_ATPase PF09818.9 AHV91968.1 - 0.079 11.7 0.0 6.1 5.5 0.0 2.3 2 1 0 2 2 2 0 Predicted ATPase of the ABC class IstB_IS21 PF01695.17 AHV91968.1 - 0.081 12.6 0.0 7.8 6.2 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_25 PF13481.6 AHV91968.1 - 0.092 12.3 0.3 0.78 9.3 0.0 2.2 2 1 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 AHV91968.1 - 0.098 12.6 0.0 2.8 7.8 0.0 2.1 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea Mg_chelatase PF01078.21 AHV91968.1 - 0.11 11.9 0.0 0.18 11.1 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_28 PF13521.6 AHV91968.1 - 0.12 12.6 0.0 0.51 10.6 0.0 2.1 3 0 0 3 3 2 0 AAA domain AAA_30 PF13604.6 AHV91968.1 - 0.13 12.0 0.0 0.25 11.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain Viral_helicase1 PF01443.18 AHV91968.1 - 0.15 11.8 0.1 6.5 6.4 0.0 2.4 3 0 0 3 3 2 0 Viral (Superfamily 1) RNA helicase SbcCD_C PF13558.6 AHV91968.1 - 0.18 12.1 0.4 13 6.1 0.1 3.0 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit Sulfatase PF00884.23 AHV91969.1 - 3.5e-53 181.0 0.0 5.7e-53 180.3 0.0 1.3 1 1 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 AHV91969.1 - 7.4e-07 29.1 0.2 0.013 15.1 0.0 2.3 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF1501 PF07394.12 AHV91969.1 - 0.036 13.1 0.0 4.1 6.4 0.0 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF1501) Aldolase_II PF00596.21 AHV91970.1 - 1.4e-37 129.5 1.4 1.9e-37 129.0 1.4 1.2 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain adh_short PF00106.25 AHV91971.1 - 2.7e-43 147.7 1.4 3.3e-43 147.4 1.4 1.0 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 AHV91971.1 - 5.5e-41 140.7 0.4 6.6e-41 140.4 0.4 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 AHV91971.1 - 1.1e-08 35.2 2.4 2.7e-08 33.9 2.4 1.7 1 1 0 1 1 1 1 KR domain 3Beta_HSD PF01073.19 AHV91971.1 - 0.0035 16.4 0.1 0.005 15.9 0.1 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Sacchrp_dh_NADP PF03435.18 AHV91971.1 - 0.073 13.3 0.2 0.13 12.5 0.2 1.6 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Epimerase PF01370.21 AHV91971.1 - 0.08 12.4 0.1 0.12 11.8 0.1 1.4 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family MmgE_PrpD PF03972.14 AHV91972.1 - 3.2e-72 243.5 5.0 3.9e-72 243.2 5.0 1.0 1 0 0 1 1 1 1 MmgE/PrpD family LptE PF04390.12 AHV91973.1 - 2.8e-05 24.8 1.1 3.7e-05 24.4 1.1 1.2 1 0 0 1 1 1 1 Lipopolysaccharide-assembly YqeY PF09424.10 AHV91974.1 - 2.1e-49 167.3 8.8 2.4e-49 167.1 8.8 1.0 1 0 0 1 1 1 1 Yqey-like protein T2SSE PF00437.20 AHV91974.1 - 0.0039 16.3 0.8 0.005 15.9 0.8 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein Tma16 PF11176.8 AHV91974.1 - 0.039 13.8 1.3 0.052 13.4 1.3 1.1 1 0 0 1 1 1 0 Translation machinery-associated protein 16 DAO PF01266.24 AHV91975.1 - 3.7e-61 207.7 8.1 4.2e-61 207.5 8.1 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 AHV91975.1 - 4.9e-12 45.6 10.0 7.4e-12 45.1 10.0 1.2 1 0 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.7 AHV91975.1 - 4.3e-08 32.9 2.3 8.5e-06 25.4 0.4 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 AHV91975.1 - 6.7e-07 28.9 0.1 1.2e-06 28.1 0.1 1.4 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.14 AHV91975.1 - 7.8e-06 24.8 0.0 0.001 17.9 0.0 2.3 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_8 PF13450.6 AHV91975.1 - 7.9e-06 26.0 0.1 7.9e-06 26.0 0.1 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.6 AHV91975.1 - 2.2e-05 23.9 0.0 0.026 13.8 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 AHV91975.1 - 0.00017 21.0 1.7 0.0014 17.9 1.7 2.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 AHV91975.1 - 0.00028 20.1 1.0 0.00055 19.1 1.0 1.5 1 0 0 1 1 1 1 Glucose inhibited division protein A Thi4 PF01946.17 AHV91975.1 - 0.0006 19.1 0.1 0.0011 18.2 0.1 1.4 1 0 0 1 1 1 1 Thi4 family Pyr_redox PF00070.27 AHV91975.1 - 0.01 16.4 3.0 0.016 15.7 0.3 2.5 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 AHV91975.1 - 0.012 14.9 0.2 0.03 13.6 0.0 1.7 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.18 AHV91975.1 - 0.016 15.1 0.1 0.035 14.0 0.1 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Lycopene_cycl PF05834.12 AHV91975.1 - 0.036 13.1 0.1 0.067 12.2 0.1 1.4 1 0 0 1 1 1 0 Lycopene cyclase protein NAD_binding_7 PF13241.6 AHV91975.1 - 0.063 13.7 0.2 1.4 9.4 0.1 2.4 2 0 0 2 2 2 0 Putative NAD(P)-binding Trp_halogenase PF04820.14 AHV91975.1 - 0.11 11.3 0.1 0.46 9.3 0.0 1.9 2 0 0 2 2 2 0 Tryptophan halogenase MCRA PF06100.11 AHV91975.1 - 0.14 10.9 0.0 0.21 10.4 0.0 1.2 1 0 0 1 1 1 0 MCRA family NAD_binding_9 PF13454.6 AHV91975.1 - 0.22 11.5 4.9 0.36 10.8 0.2 2.7 3 0 0 3 3 3 0 FAD-NAD(P)-binding BPD_transp_2 PF02653.16 AHV91976.1 - 6.1e-43 146.9 22.5 6.1e-43 146.9 22.5 2.3 1 1 1 2 2 2 1 Branched-chain amino acid transport system / permease component ABC_tran PF00005.27 AHV91976.1 - 4.7e-29 101.7 0.0 6.9e-29 101.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.8 AHV91976.1 - 6.1e-11 42.0 1.8 2.6e-10 40.0 0.2 2.3 2 0 0 2 2 2 1 Branched-chain amino acid ATP-binding cassette transporter AAA_21 PF13304.6 AHV91976.1 - 0.00017 21.6 3.3 0.046 13.5 0.3 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 AHV91976.1 - 0.00023 20.8 0.2 0.00055 19.6 0.2 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 AHV91976.1 - 0.00069 19.4 0.0 0.0016 18.2 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 AHV91976.1 - 0.0094 16.2 0.8 3.2 8.0 0.1 2.3 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.19 AHV91976.1 - 0.02 14.3 0.2 0.054 12.9 0.1 1.7 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 AHV91976.1 - 0.022 15.3 0.1 0.035 14.6 0.1 1.2 1 0 0 1 1 1 0 AAA domain AAA_27 PF13514.6 AHV91976.1 - 0.047 13.3 0.0 0.15 11.6 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.6 AHV91976.1 - 0.085 12.6 0.1 0.12 12.0 0.1 1.1 1 0 0 1 1 1 0 AAA ATPase domain DUF5542 PF17696.1 AHV91976.1 - 0.17 12.0 0.7 0.52 10.5 0.0 2.0 2 0 0 2 2 2 0 Family of unknown function (DUF5542) RsgA_GTPase PF03193.16 AHV91976.1 - 0.17 11.8 0.1 0.3 11.0 0.1 1.3 1 0 0 1 1 1 0 RsgA GTPase MMR_HSR1 PF01926.23 AHV91976.1 - 0.17 12.0 0.4 0.52 10.4 0.4 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase GCV_H PF01597.19 AHV91977.1 - 1.8e-39 134.4 0.3 2.2e-39 134.1 0.3 1.0 1 0 0 1 1 1 1 Glycine cleavage H-protein Biotin_lipoyl PF00364.22 AHV91977.1 - 0.00046 20.0 0.9 0.0011 18.8 0.2 1.9 2 0 0 2 2 2 1 Biotin-requiring enzyme MinC_C PF03775.16 AHV91977.1 - 0.0057 16.6 1.7 0.017 15.1 0.5 2.1 1 1 1 2 2 2 1 Septum formation inhibitor MinC, C-terminal domain RnfC_N PF13375.6 AHV91977.1 - 0.074 13.0 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 RnfC Barrel sandwich hybrid domain LysR_substrate PF03466.20 AHV91978.1 - 2.5e-41 141.3 2.1 4.1e-41 140.7 2.1 1.3 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 AHV91978.1 - 3.7e-19 68.4 0.6 6.9e-19 67.6 0.6 1.5 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_IclR PF09339.10 AHV91978.1 - 0.0064 16.3 0.2 0.017 14.9 0.1 1.8 1 1 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.12 AHV91978.1 - 0.078 12.9 0.0 0.16 12.0 0.0 1.4 1 0 0 1 1 1 0 HTH domain AnmK PF03702.14 AHV91979.1 - 4.6e-135 450.4 0.1 5.2e-135 450.2 0.1 1.0 1 0 0 1 1 1 1 Anhydro-N-acetylmuramic acid kinase FGGY_C PF02782.16 AHV91979.1 - 0.0004 20.2 0.4 0.00086 19.1 0.1 1.7 2 0 0 2 2 2 1 FGGY family of carbohydrate kinases, C-terminal domain HSP70 PF00012.20 AHV91980.1 - 3.6e-265 880.8 13.7 4.2e-265 880.6 13.7 1.0 1 0 0 1 1 1 1 Hsp70 protein MreB_Mbl PF06723.13 AHV91980.1 - 3.4e-14 52.4 4.5 9e-12 44.4 0.9 2.5 2 1 0 2 2 2 2 MreB/Mbl protein TMP_2 PF06791.13 AHV91980.1 - 0.051 13.2 8.2 0.054 13.2 4.9 2.4 2 0 0 2 2 2 0 Prophage tail length tape measure protein DUF1090 PF06476.12 AHV91980.1 - 0.065 13.4 11.1 0.22 11.7 11.1 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF1090) Hydantoinase_A PF01968.18 AHV91980.1 - 0.067 12.4 1.2 0.35 10.1 0.1 2.4 2 0 0 2 2 2 0 Hydantoinase/oxoprolinase OsmC PF02566.19 AHV91980.1 - 0.13 12.8 0.2 12 6.5 0.0 3.1 2 0 0 2 2 2 0 OsmC-like protein FtsA PF14450.6 AHV91980.1 - 2 8.9 14.2 1.3 9.4 0.4 3.8 3 3 0 3 3 3 0 Cell division protein FtsA TrkA_N PF02254.18 AHV91983.1 - 4.4e-26 91.4 0.2 1.5e-25 89.7 0.0 2.0 2 0 0 2 2 2 1 TrkA-N domain TrkA_C PF02080.21 AHV91983.1 - 8.2e-15 54.4 0.9 9.1e-13 47.8 0.2 2.7 2 0 0 2 2 2 1 TrkA-C domain NAD_binding_7 PF13241.6 AHV91983.1 - 2.6e-05 24.6 0.0 0.00022 21.6 0.0 2.3 1 1 1 2 2 2 1 Putative NAD(P)-binding F420_oxidored PF03807.17 AHV91983.1 - 3.5e-05 24.3 0.8 0.00044 20.8 0.0 3.0 4 1 0 4 4 4 1 NADP oxidoreductase coenzyme F420-dependent Pyr_redox PF00070.27 AHV91983.1 - 0.00022 21.7 0.1 0.00077 20.0 0.0 2.0 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 AHV91983.1 - 0.00036 19.9 0.1 0.00058 19.2 0.1 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Shikimate_DH PF01488.20 AHV91983.1 - 0.00074 19.6 0.3 0.0025 17.9 0.1 2.0 2 1 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase adh_short PF00106.25 AHV91983.1 - 0.0026 17.2 0.0 0.0073 15.8 0.0 1.7 1 1 0 1 1 1 1 short chain dehydrogenase FAD_binding_3 PF01494.19 AHV91983.1 - 0.0028 16.9 0.4 0.004 16.5 0.4 1.2 1 0 0 1 1 1 1 FAD binding domain NAD_Gly3P_dh_N PF01210.23 AHV91983.1 - 0.0031 17.5 0.0 0.019 14.9 0.0 2.3 2 1 1 3 3 3 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.16 AHV91983.1 - 0.0072 16.0 0.1 0.042 13.5 0.0 2.3 3 0 0 3 3 3 1 Ketopantoate reductase PanE/ApbA NAD_binding_2 PF03446.15 AHV91983.1 - 0.0093 16.1 0.0 0.031 14.5 0.0 2.1 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase Sacchrp_dh_NADP PF03435.18 AHV91983.1 - 0.011 16.0 0.1 0.087 13.1 0.0 2.4 2 1 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain 3HCDH_N PF02737.18 AHV91983.1 - 0.02 14.7 0.0 0.048 13.5 0.0 1.6 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NmrA PF05368.13 AHV91983.1 - 0.078 12.5 0.0 0.14 11.7 0.0 1.5 2 0 0 2 2 2 0 NmrA-like family UreE_N PF02814.15 AHV91983.1 - 0.31 10.7 3.3 0.88 9.2 0.0 3.0 2 1 1 3 3 3 0 UreE urease accessory protein, N-terminal domain rve_3 PF13683.6 AHV91984.1 - 1.8e-31 107.7 0.0 4.1e-31 106.6 0.0 1.6 2 0 0 2 2 2 1 Integrase core domain rve PF00665.26 AHV91984.1 - 5.6e-24 84.6 0.0 9.5e-24 83.9 0.0 1.3 1 0 0 1 1 1 1 Integrase core domain rve_2 PF13333.6 AHV91984.1 - 7e-07 29.3 0.0 1.2e-06 28.6 0.0 1.3 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AHV91984.1 - 0.00052 20.3 0.0 0.00079 19.7 0.0 1.4 1 0 0 1 1 1 1 DDE domain Pantoate_ligase PF02569.15 AHV91985.1 - 2.3e-94 315.5 0.0 2.6e-94 315.4 0.0 1.0 1 0 0 1 1 1 1 Pantoate-beta-alanine ligase CTP_transf_like PF01467.26 AHV91985.1 - 0.039 14.1 0.0 0.058 13.6 0.0 1.3 1 0 0 1 1 1 0 Cytidylyltransferase-like GST_N_3 PF13417.6 AHV91986.1 - 8.5e-17 61.3 0.0 1.6e-16 60.5 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N PF02798.20 AHV91986.1 - 2.5e-15 56.5 0.0 6.3e-15 55.3 0.0 1.7 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.6 AHV91986.1 - 1.6e-12 47.5 0.0 3.2e-12 46.6 0.0 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_C PF00043.25 AHV91986.1 - 1.1e-07 32.0 0.0 1.4e-07 31.6 0.0 1.2 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C_2 PF13410.6 AHV91986.1 - 2e-07 31.0 0.0 2.9e-07 30.4 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain Glutaredoxin PF00462.24 AHV91986.1 - 2.7e-05 24.3 0.1 6.9e-05 23.0 0.0 1.7 2 0 0 2 2 2 1 Glutaredoxin GST_C_3 PF14497.6 AHV91986.1 - 0.0071 16.5 0.0 0.012 15.8 0.0 1.3 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain Plug PF07715.15 AHV91987.1 - 5.3e-17 62.3 2.2 1.2e-16 61.2 0.4 2.4 2 1 0 2 2 2 1 TonB-dependent Receptor Plug Domain STN PF07660.14 AHV91987.1 - 3.1e-08 33.3 0.0 5.6e-07 29.2 0.0 2.6 2 0 0 2 2 2 1 Secretin and TonB N terminus short domain ACP_syn_III_C PF08541.10 AHV91988.1 - 3.4e-21 75.2 0.0 7.9e-21 74.0 0.0 1.7 1 0 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ACP_syn_III PF08545.10 AHV91988.1 - 2e-11 43.6 0.1 4.2e-11 42.6 0.1 1.6 1 0 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Chal_sti_synt_N PF00195.19 AHV91988.1 - 0.0002 20.9 0.0 0.00032 20.2 0.0 1.3 1 0 0 1 1 1 1 Chalcone and stilbene synthases, N-terminal domain Thiolase_N PF00108.23 AHV91988.1 - 0.18 11.1 0.0 0.27 10.5 0.0 1.2 1 0 0 1 1 1 0 Thiolase, N-terminal domain PEP_mutase PF13714.6 AHV91989.1 - 1.2e-60 205.0 1.3 1.3e-60 204.8 1.3 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate phosphomutase ICL PF00463.21 AHV91989.1 - 4.4e-15 55.2 0.2 6e-15 54.7 0.2 1.1 1 0 0 1 1 1 1 Isocitrate lyase family Pantoate_transf PF02548.15 AHV91989.1 - 5.2e-05 22.7 0.0 0.17 11.3 0.0 2.2 1 1 1 2 2 2 2 Ketopantoate hydroxymethyltransferase PEP_hydrolase PF09370.10 AHV91989.1 - 0.0008 18.7 0.7 0.0024 17.2 0.7 1.7 1 1 0 1 1 1 1 Phosphoenolpyruvate hydrolase-like EcKinase PF02958.20 AHV91989.1 - 0.18 11.1 0.0 0.25 10.6 0.0 1.2 1 0 0 1 1 1 0 Ecdysteroid kinase TatD_DNase PF01026.21 AHV91990.1 - 1.8e-55 188.1 0.0 2.2e-55 187.8 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase ArgJ PF01960.18 AHV91991.1 - 1.2e-141 471.8 0.4 1.4e-141 471.6 0.4 1.0 1 0 0 1 1 1 1 ArgJ family LPD7 PF18821.1 AHV91991.1 - 0.023 14.8 0.0 0.083 13.0 0.0 1.9 2 0 0 2 2 2 0 Large polyvalent protein-associated domain 7 Response_reg PF00072.24 AHV91992.1 - 3.5e-24 85.1 0.0 8.1e-24 84.0 0.0 1.6 2 0 0 2 2 2 1 Response regulator receiver domain Trans_reg_C PF00486.28 AHV91992.1 - 1.6e-19 69.8 0.2 3.6e-19 68.6 0.2 1.6 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal adh_short PF00106.25 AHV91994.1 - 1.4e-42 145.4 0.0 1.8e-42 145.1 0.0 1.0 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 AHV91994.1 - 3.2e-28 98.9 0.0 3.9e-28 98.6 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 AHV91994.1 - 7.2e-16 58.6 0.2 1.1e-15 58.0 0.2 1.3 1 1 0 1 1 1 1 KR domain Polysacc_synt_2 PF02719.15 AHV91994.1 - 6.2e-08 32.1 0.0 8.4e-08 31.7 0.0 1.1 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein Epimerase PF01370.21 AHV91994.1 - 6.6e-06 25.7 0.5 1.5e-05 24.6 0.5 1.7 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Sacchrp_dh_NADP PF03435.18 AHV91994.1 - 7.3e-06 26.3 0.1 1.1e-05 25.6 0.1 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NmrA PF05368.13 AHV91994.1 - 4.1e-05 23.3 0.1 5.6e-05 22.8 0.1 1.2 1 0 0 1 1 1 1 NmrA-like family NAD_binding_10 PF13460.6 AHV91994.1 - 0.00026 20.9 0.5 0.00033 20.6 0.5 1.1 1 0 0 1 1 1 1 NAD(P)H-binding GDP_Man_Dehyd PF16363.5 AHV91994.1 - 0.0006 19.3 0.2 0.0011 18.5 0.0 1.4 2 0 0 2 2 2 1 GDP-mannose 4,6 dehydratase F420_oxidored PF03807.17 AHV91994.1 - 0.0055 17.3 0.0 0.0098 16.5 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.20 AHV91994.1 - 0.0076 16.3 0.1 0.012 15.7 0.1 1.2 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase RmlD_sub_bind PF04321.17 AHV91994.1 - 0.016 14.3 0.1 0.025 13.7 0.1 1.4 1 0 0 1 1 1 0 RmlD substrate binding domain Ldh_1_N PF00056.23 AHV91994.1 - 0.022 14.8 0.2 0.039 14.0 0.2 1.4 1 1 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain DFP PF04127.15 AHV91994.1 - 0.079 12.8 0.4 0.2 11.5 0.4 1.6 1 1 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein ETF PF01012.21 AHV91994.1 - 0.09 12.7 0.2 0.2 11.5 0.2 1.6 1 1 0 1 1 1 0 Electron transfer flavoprotein domain DNA_photolyase PF00875.18 AHV91994.1 - 0.099 12.7 0.1 0.17 11.9 0.1 1.4 1 0 0 1 1 1 0 DNA photolyase YjeF_N PF03853.15 AHV91994.1 - 0.1 12.5 0.1 0.16 11.9 0.1 1.3 1 0 0 1 1 1 0 YjeF-related protein N-terminus ThiF PF00899.21 AHV91994.1 - 0.13 11.6 1.5 3.9 6.8 0.2 2.1 1 1 1 2 2 2 0 ThiF family Rad10 PF03834.14 AHV91994.1 - 0.26 11.3 0.0 0.44 10.6 0.0 1.3 1 0 0 1 1 1 0 Binding domain of DNA repair protein Ercc1 (rad10/Swi10) Ank_4 PF13637.6 AHV91995.1 - 7.1e-17 61.6 0.3 2.7e-06 27.8 0.0 4.0 1 1 3 4 4 4 4 Ankyrin repeats (many copies) Ank_2 PF12796.7 AHV91995.1 - 2e-13 50.7 0.1 1.2e-05 25.7 0.1 2.1 1 1 0 2 2 2 2 Ankyrin repeats (3 copies) Ank_5 PF13857.6 AHV91995.1 - 1.9e-09 37.6 3.0 0.0052 17.1 0.5 3.6 2 2 2 4 4 4 4 Ankyrin repeats (many copies) Ank_3 PF13606.6 AHV91995.1 - 8.1e-09 35.0 0.2 0.11 13.1 0.0 3.8 4 0 0 4 4 4 2 Ankyrin repeat Ank PF00023.30 AHV91995.1 - 1.2e-07 31.9 2.1 0.012 16.0 0.1 3.9 4 0 0 4 4 4 2 Ankyrin repeat LysR_substrate PF03466.20 AHV91996.1 - 1.2e-21 77.1 9.5 2e-21 76.4 9.5 1.3 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 AHV91996.1 - 4.2e-17 61.8 0.5 1.4e-16 60.1 0.5 2.0 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family DUF2089 PF09862.9 AHV91996.1 - 0.088 12.9 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2089) Peripla_BP_6 PF13458.6 AHV91997.1 - 8.2e-76 255.9 0.5 1.1e-75 255.4 0.5 1.2 1 0 0 1 1 1 1 Periplasmic binding protein TauE PF01925.19 AHV91998.1 - 4.1e-45 154.3 40.5 5.1e-45 154.0 40.5 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE Radical_SAM PF04055.21 AHV91999.1 - 1e-13 52.0 0.0 1.7e-13 51.3 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily HemN_C PF06969.16 AHV91999.1 - 9.6e-11 41.6 0.6 3e-10 40.0 0.6 1.9 1 0 0 1 1 1 1 HemN C-terminal domain Bac_globin PF01152.21 AHV92000.1 - 1.9e-42 144.2 0.0 2.2e-42 144.0 0.0 1.0 1 0 0 1 1 1 1 Bacterial-like globin TetR_C_15 PF17918.1 AHV92000.1 - 0.083 13.7 0.1 0.16 12.8 0.1 1.4 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain HTH_Tnp_1 PF01527.20 AHV92001.1 - 8.6e-05 22.8 0.2 8.9e-05 22.7 0.2 1.1 1 0 0 1 1 1 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV92001.1 - 0.078 12.4 0.1 0.091 12.2 0.1 1.1 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 rve PF00665.26 AHV92002.1 - 4.7e-13 49.4 0.0 1.9e-11 44.2 0.0 2.1 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 AHV92002.1 - 9.1e-12 44.9 8.6 1.8e-11 44.0 8.6 1.5 1 0 0 1 1 1 1 HTH-like domain Rhomboid_SP PF12595.8 AHV92002.1 - 0.0027 17.1 0.4 1 8.6 0.0 2.2 1 1 0 2 2 2 2 Rhomboid serine protease FecR PF04773.13 AHV92003.1 - 1.8e-07 31.7 0.0 2.6e-07 31.2 0.0 1.2 1 0 0 1 1 1 1 FecR protein NfeD PF01957.18 AHV92004.1 - 4.9e-09 36.4 0.2 1.1e-08 35.4 0.2 1.5 1 0 0 1 1 1 1 NfeD-like C-terminal, partner-binding Wzy_C PF04932.15 AHV92004.1 - 0.018 14.7 1.7 0.021 14.4 1.7 1.1 1 0 0 1 1 1 0 O-Antigen ligase GLTT PF01744.20 AHV92004.1 - 0.06 13.1 0.4 0.13 12.0 0.4 1.6 1 0 0 1 1 1 0 GLTT repeat (6 copies) ACR_tran PF00873.19 AHV92005.1 - 2.2e-12 45.5 0.1 2.6e-12 45.3 0.1 1.0 1 0 0 1 1 1 1 AcrB/AcrD/AcrF family DUF4736 PF15883.5 AHV92005.1 - 0.089 12.5 0.1 0.1 12.3 0.1 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4736) zf-SCNM1 PF15803.5 AHV92005.1 - 0.12 12.0 0.1 0.18 11.4 0.1 1.3 1 0 0 1 1 1 0 Zinc-finger of sodium channel modifier 1 HTH_18 PF12833.7 AHV92006.1 - 2.5e-23 82.1 0.6 6.3e-23 80.9 0.6 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 AHV92006.1 - 5.7e-05 23.1 0.0 0.089 12.9 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family DUF4401 PF14351.6 AHV92007.1 - 1.1e-05 24.9 4.2 1.1e-05 24.9 4.2 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF4401) CTP_transf_like PF01467.26 AHV92008.1 - 4.6e-09 36.6 0.0 5e-09 36.5 0.0 1.0 1 0 0 1 1 1 1 Cytidylyltransferase-like 4PPT_N PF17837.1 AHV92008.1 - 0.014 15.5 0.5 0.017 15.3 0.5 1.1 1 0 0 1 1 1 0 4'-phosphopantetheinyl transferase N-terminal domain GST_N PF02798.20 AHV92009.1 - 3.8e-12 46.4 0.0 5.8e-12 45.8 0.0 1.3 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_C PF00043.25 AHV92009.1 - 3.1e-09 36.9 0.0 1.2e-08 35.0 0.0 1.9 2 0 0 2 2 2 1 Glutathione S-transferase, C-terminal domain GST_N_3 PF13417.6 AHV92009.1 - 1e-08 35.5 0.0 1.5e-08 34.9 0.0 1.3 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.6 AHV92009.1 - 2.6e-07 30.8 0.0 4.5e-07 30.1 0.0 1.3 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_C_3 PF14497.6 AHV92009.1 - 4.1e-07 30.1 0.0 1.4e-06 28.4 0.0 1.8 2 0 0 2 2 2 1 Glutathione S-transferase, C-terminal domain GST_C_2 PF13410.6 AHV92009.1 - 1.8e-06 27.9 0.9 3.4e-06 27.0 0.8 1.6 1 1 0 1 1 1 1 Glutathione S-transferase, C-terminal domain Tom37 PF10568.9 AHV92009.1 - 0.048 14.0 0.0 0.12 12.6 0.0 1.6 2 0 0 2 2 2 0 Outer mitochondrial membrane transport complex protein Nif11 PF07862.11 AHV92009.1 - 0.1 12.9 0.1 0.24 11.7 0.1 1.6 1 0 0 1 1 1 0 Nif11 domain MutL_C PF08676.11 AHV92010.1 - 2.6e-48 163.5 0.0 4.5e-48 162.8 0.0 1.4 1 0 0 1 1 1 1 MutL C terminal dimerisation domain DNA_mis_repair PF01119.19 AHV92010.1 - 1.5e-37 127.9 0.0 2.3e-37 127.3 0.0 1.3 1 0 0 1 1 1 1 DNA mismatch repair protein, C-terminal domain HATPase_c_3 PF13589.6 AHV92010.1 - 1.4e-09 37.9 0.0 2.5e-09 37.1 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.26 AHV92010.1 - 3.6e-06 27.4 0.0 7e-06 26.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 2Fe-2S_thioredx PF01257.19 AHV92011.1 - 2.1e-37 128.2 0.0 2.5e-37 128.0 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin-like [2Fe-2S] ferredoxin ADH_N PF08240.12 AHV92012.1 - 1.7e-26 92.2 3.7 3.3e-26 91.3 3.7 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 AHV92012.1 - 3.3e-25 88.6 0.0 5e-25 88.0 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.21 AHV92012.1 - 4.3e-07 29.4 0.8 7.4e-07 28.7 0.8 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain ADH_zinc_N_2 PF13602.6 AHV92012.1 - 6.1e-06 27.3 0.0 1.1e-05 26.5 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase 2-Hacid_dh_C PF02826.19 AHV92012.1 - 1.8e-05 24.2 0.0 2.8e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 AHV92012.1 - 0.0011 19.2 0.3 0.0018 18.5 0.3 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Shikimate_DH PF01488.20 AHV92012.1 - 0.012 15.7 0.0 0.02 15.0 0.0 1.2 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Oxidored_nitro PF00148.19 AHV92012.1 - 0.014 14.2 0.1 0.02 13.7 0.1 1.1 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase GFO_IDH_MocA PF01408.22 AHV92012.1 - 0.11 13.4 0.0 0.18 12.6 0.0 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold ELFV_dehydrog PF00208.21 AHV92012.1 - 0.12 12.0 0.1 0.19 11.4 0.1 1.2 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 3HCDH_N PF02737.18 AHV92012.1 - 0.16 11.9 0.5 0.22 11.4 0.5 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HEPN_SAV_6107 PF18726.1 AHV92012.1 - 0.18 12.3 1.4 0.46 11.0 0.7 1.9 2 0 0 2 2 2 0 SAV_6107-like HEPN Phenol_Hydrox PF02332.18 AHV92013.1 - 2.7e-59 200.5 3.1 4.4e-59 199.8 3.1 1.3 1 0 0 1 1 1 1 Methane/Phenol/Toluene Hydroxylase FA_desaturase_2 PF03405.14 AHV92013.1 - 0.0032 16.4 0.0 0.0058 15.5 0.0 1.4 1 0 0 1 1 1 1 Fatty acid desaturase YHS PF04945.13 AHV92013.1 - 0.0034 17.5 0.0 0.0075 16.4 0.0 1.6 1 0 0 1 1 1 1 YHS domain Gluconate_2-dh3 PF13618.6 AHV92013.1 - 0.22 11.8 1.3 0.31 11.3 0.5 1.6 2 0 0 2 2 2 0 Gluconate 2-dehydrogenase subunit 3 FUSC-like PF12805.7 AHV92014.1 - 6e-26 91.2 1.5 6e-26 91.2 1.5 2.3 2 1 0 2 2 2 1 FUSC-like inner membrane protein yccS FUSC_2 PF13515.6 AHV92014.1 - 4.8e-14 52.6 16.9 7.4e-14 52.0 16.9 1.3 1 0 0 1 1 1 1 Fusaric acid resistance protein-like FUSC PF04632.12 AHV92014.1 - 2.1e-06 26.6 19.5 2.1e-06 26.6 19.5 2.4 2 1 0 2 2 2 2 Fusaric acid resistance protein family DUF5325 PF17259.2 AHV92014.1 - 0.04 13.8 0.1 0.04 13.8 0.1 2.5 2 0 0 2 2 2 0 Family of unknown function (DUF5325) V-SNARE PF05008.15 AHV92014.1 - 0.07 13.5 0.2 0.15 12.4 0.2 1.5 1 0 0 1 1 1 0 Vesicle transport v-SNARE protein N-terminus ALMT PF11744.8 AHV92014.1 - 0.23 10.3 9.0 0.058 12.2 4.8 2.0 1 1 1 2 2 2 0 Aluminium activated malate transporter ArAE_1 PF06081.11 AHV92014.1 - 0.84 9.8 12.6 1.5 9.0 12.6 1.4 1 0 0 1 1 1 0 Aromatic acid exporter family member 1 PEP_mutase PF13714.6 AHV92015.1 - 8.9e-51 172.6 0.8 1.1e-50 172.4 0.8 1.1 1 0 0 1 1 1 1 Phosphoenolpyruvate phosphomutase ICL PF00463.21 AHV92015.1 - 2.9e-12 45.9 0.1 3.8e-12 45.5 0.1 1.1 1 0 0 1 1 1 1 Isocitrate lyase family Pantoate_transf PF02548.15 AHV92015.1 - 0.0035 16.8 0.1 0.12 11.7 0.0 2.7 1 1 2 3 3 3 1 Ketopantoate hydroxymethyltransferase Competence PF03772.16 AHV92016.1 - 1e-58 198.8 41.9 1e-58 198.8 41.9 1.6 2 0 0 2 2 2 1 Competence protein DUF4131 PF13567.6 AHV92016.1 - 1e-13 51.2 0.2 1e-13 51.2 0.2 5.3 2 1 3 5 5 5 1 Domain of unknown function (DUF4131) ParBc PF02195.18 AHV92017.1 - 1.4e-25 89.4 0.2 2.8e-25 88.4 0.2 1.6 1 0 0 1 1 1 1 ParB-like nuclease domain HTH_ParB PF17762.1 AHV92017.1 - 1.6e-18 66.2 3.0 2.7e-18 65.5 0.4 2.4 2 0 0 2 2 2 1 HTH domain found in ParB protein HTH_23 PF13384.6 AHV92017.1 - 0.025 14.4 0.1 0.15 11.9 0.0 2.3 2 0 0 2 2 2 0 Homeodomain-like domain DUF4287 PF14117.6 AHV92017.1 - 0.14 12.3 0.1 0.94 9.7 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4287) CopB PF05275.11 AHV92018.1 - 0.00019 21.1 0.1 0.00045 19.9 0.1 1.5 1 0 0 1 1 1 1 Copper resistance protein B precursor (CopB) PCMT PF01135.19 AHV92019.1 - 5.9e-36 124.2 0.0 7e-36 123.9 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RrnaAD PF00398.20 AHV92019.1 - 2.2e-10 40.1 0.0 3e-10 39.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase MTS PF05175.14 AHV92019.1 - 5e-08 32.7 0.4 8e-08 32.0 0.1 1.5 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_25 PF13649.6 AHV92019.1 - 1.8e-07 31.8 0.0 5.1e-07 30.3 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 AHV92019.1 - 1.6e-06 28.6 0.0 4.7e-06 27.2 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 AHV92019.1 - 1.5e-05 24.8 0.0 2e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 AHV92019.1 - 2e-05 24.2 0.1 2.8e-05 23.7 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_23 PF13489.6 AHV92019.1 - 0.00038 20.3 0.0 0.00054 19.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 AHV92019.1 - 0.002 18.8 0.0 0.0086 16.8 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Met_10 PF02475.16 AHV92019.1 - 0.0047 16.7 0.0 0.0066 16.2 0.0 1.4 1 0 0 1 1 1 1 Met-10+ like-protein tRNA_U5-meth_tr PF05958.11 AHV92019.1 - 0.0072 15.4 0.1 0.011 14.8 0.1 1.2 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase DUF43 PF01861.16 AHV92019.1 - 0.041 13.1 0.0 0.056 12.7 0.0 1.2 1 0 0 1 1 1 0 Branched-chain polyamine synthase A C-terminal domain TehB PF03848.14 AHV92019.1 - 0.045 13.1 0.0 0.056 12.9 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB NodS PF05401.11 AHV92019.1 - 0.053 13.1 0.0 0.072 12.7 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) Methyltransf_15 PF09445.10 AHV92019.1 - 0.074 12.6 0.0 0.097 12.2 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltr_RsmB-F PF01189.17 AHV92019.1 - 0.1 12.2 0.0 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F DUF938 PF06080.12 AHV92019.1 - 0.11 12.3 0.1 0.28 10.9 0.1 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF938) CMAS PF02353.20 AHV92019.1 - 0.21 10.8 0.0 0.29 10.4 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase GST_N_3 PF13417.6 AHV92020.1 - 2e-15 56.9 0.0 4.2e-15 55.9 0.0 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_C_2 PF13410.6 AHV92020.1 - 1e-10 41.4 1.1 1.5e-10 41.0 1.1 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_N_2 PF13409.6 AHV92020.1 - 6.6e-10 39.2 0.0 1.5e-09 38.1 0.0 1.6 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_C PF00043.25 AHV92020.1 - 2.4e-05 24.5 0.0 3.9e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_N PF02798.20 AHV92020.1 - 0.00086 19.6 0.0 0.0018 18.6 0.0 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_C_3 PF14497.6 AHV92020.1 - 0.0028 17.8 0.0 0.0042 17.2 0.0 1.2 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_N_4 PF17172.4 AHV92020.1 - 0.027 15.2 0.0 0.05 14.3 0.0 1.4 1 0 0 1 1 1 0 Glutathione S-transferase N-terminal domain GST_C_6 PF17171.4 AHV92020.1 - 0.027 14.2 0.1 0.053 13.3 0.1 1.5 1 1 0 1 1 1 0 Glutathione S-transferase, C-terminal domain Glutaredoxin PF00462.24 AHV92020.1 - 0.051 13.8 0.0 0.092 13.0 0.0 1.4 1 0 0 1 1 1 0 Glutaredoxin BPD_transp_1 PF00528.22 AHV92021.1 - 5.9e-24 84.8 13.1 5.9e-24 84.8 13.1 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 AHV92021.1 - 0.00015 21.7 0.9 0.00015 21.7 0.9 2.9 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C MacB_PCD PF12704.7 AHV92022.1 - 1.1e-39 136.9 6.6 1.1e-39 136.9 6.6 2.1 2 0 0 2 2 1 1 MacB-like periplasmic core domain ABC_tran PF00005.27 AHV92022.1 - 3.2e-29 102.2 0.0 5.8e-29 101.4 0.0 1.4 1 0 0 1 1 1 1 ABC transporter FtsX PF02687.21 AHV92022.1 - 3.9e-11 43.3 2.5 3.9e-11 43.3 2.5 3.3 3 0 0 3 3 3 1 FtsX-like permease family AAA_16 PF13191.6 AHV92022.1 - 2.6e-05 24.7 0.7 6.1e-05 23.5 0.2 1.9 2 1 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 AHV92022.1 - 0.00038 20.1 0.0 0.0011 18.7 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_21 PF13304.6 AHV92022.1 - 0.00075 19.4 0.0 0.062 13.1 0.0 2.2 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 AHV92022.1 - 0.00094 18.7 0.0 1.4 8.3 0.0 2.3 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 AHV92022.1 - 0.0044 17.0 0.0 0.01 15.7 0.0 1.6 1 0 0 1 1 1 1 RsgA GTPase MMR_HSR1 PF01926.23 AHV92022.1 - 0.013 15.6 0.3 0.048 13.7 0.1 2.1 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_28 PF13521.6 AHV92022.1 - 0.027 14.7 0.0 0.056 13.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 AHV92022.1 - 0.044 13.9 1.8 0.82 9.8 0.1 2.9 3 0 0 3 3 3 0 AAA domain AAA_22 PF13401.6 AHV92022.1 - 0.053 13.8 0.0 0.16 12.3 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 AHV92022.1 - 0.058 13.9 0.0 0.11 13.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain DUF87 PF01935.17 AHV92022.1 - 0.11 12.5 0.0 0.2 11.7 0.0 1.3 1 0 0 1 1 1 0 Helicase HerA, central domain AAA_24 PF13479.6 AHV92022.1 - 0.16 11.6 0.1 1.2 8.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain DUF4396 PF14342.6 AHV92022.1 - 0.31 11.4 9.7 0.054 13.9 1.5 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF4396) ABC2_membrane_3 PF12698.7 AHV92022.1 - 0.33 10.0 9.9 3.5 6.6 9.9 2.2 1 1 0 1 1 1 0 ABC-2 family transporter protein DUF4064 PF13273.6 AHV92022.1 - 0.44 10.8 14.8 0.55 10.5 8.5 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF4064) ABC_membrane PF00664.23 AHV92023.1 - 2.3e-44 152.1 3.1 3e-44 151.7 3.1 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 AHV92023.1 - 2.9e-32 112.0 0.0 4.9e-32 111.3 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_16 PF13191.6 AHV92023.1 - 0.0029 18.0 0.1 0.011 16.2 0.1 2.0 2 1 0 2 2 2 1 AAA ATPase domain RsgA_GTPase PF03193.16 AHV92023.1 - 0.003 17.5 0.0 0.0074 16.2 0.0 1.6 1 0 0 1 1 1 1 RsgA GTPase AAA_29 PF13555.6 AHV92023.1 - 0.0033 17.1 0.1 0.0076 16.0 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain DZR PF12773.7 AHV92023.1 - 0.0035 17.3 0.9 0.0079 16.2 0.9 1.5 1 0 0 1 1 1 1 Double zinc ribbon MMR_HSR1 PF01926.23 AHV92023.1 - 0.0036 17.4 0.0 0.011 15.8 0.0 1.8 1 0 0 1 1 1 1 50S ribosome-binding GTPase SMC_N PF02463.19 AHV92023.1 - 0.0078 15.7 0.7 1.1 8.7 0.0 2.2 1 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 AHV92023.1 - 0.054 13.8 0.1 0.26 11.6 0.1 2.1 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 AHV92023.1 - 0.07 13.4 0.2 1.3 9.3 0.2 2.6 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit ABC_membrane_3 PF13748.6 AHV92023.1 - 0.074 12.3 0.3 0.19 10.9 0.3 1.7 1 0 0 1 1 1 0 ABC transporter transmembrane region Zeta_toxin PF06414.12 AHV92023.1 - 0.086 12.1 0.1 0.39 10.0 0.0 1.9 2 0 0 2 2 2 0 Zeta toxin AAA PF00004.29 AHV92023.1 - 0.087 13.3 0.0 1.2 9.6 0.0 2.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.6 AHV92023.1 - 0.12 12.9 0.1 0.22 12.0 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 AHV92023.1 - 0.16 12.1 0.1 0.49 10.5 0.0 1.8 2 0 0 2 2 2 0 AAA domain ABC_ATPase PF09818.9 AHV92023.1 - 0.21 10.4 0.1 5.8 5.6 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class zinc-ribbons_6 PF07191.12 AHV92023.1 - 0.34 10.9 2.0 0.68 9.9 2.0 1.4 1 0 0 1 1 1 0 zinc-ribbons Aminotran_1_2 PF00155.21 AHV92024.1 - 2.3e-81 273.8 0.0 2.6e-81 273.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II rve_3 PF13683.6 AHV92025.1 - 1.8e-31 107.7 0.0 4.1e-31 106.6 0.0 1.6 2 0 0 2 2 2 1 Integrase core domain rve PF00665.26 AHV92025.1 - 5.6e-24 84.6 0.0 9.5e-24 83.9 0.0 1.3 1 0 0 1 1 1 1 Integrase core domain rve_2 PF13333.6 AHV92025.1 - 7e-07 29.3 0.0 1.2e-06 28.6 0.0 1.3 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AHV92025.1 - 0.00052 20.3 0.0 0.00079 19.7 0.0 1.4 1 0 0 1 1 1 1 DDE domain Tim17 PF02466.19 AHV92026.1 - 0.61 10.5 3.7 9.4 6.7 3.7 2.6 1 1 0 1 1 1 0 Tim17/Tim22/Tim23/Pmp24 family UPF0126 PF03458.13 AHV92028.1 - 2.3e-19 69.0 10.8 2.3e-19 69.0 10.8 1.6 2 0 0 2 2 2 1 UPF0126 domain MotA_ExbB PF01618.16 AHV92028.1 - 0.097 12.4 1.3 0.16 11.7 1.3 1.3 1 0 0 1 1 1 0 MotA/TolQ/ExbB proton channel family Pro_CA PF00484.19 AHV92029.1 - 4.4e-47 160.3 0.0 5.2e-47 160.0 0.0 1.0 1 0 0 1 1 1 1 Carbonic anhydrase JCAD PF15351.6 AHV92030.1 - 1.7 6.3 8.9 1.7 6.3 8.9 1.0 1 0 0 1 1 1 0 Junctional protein associated with coronary artery disease LysR_substrate PF03466.20 AHV92031.1 - 0.013 14.9 0.1 0.013 14.8 0.1 1.0 1 0 0 1 1 1 0 LysR substrate binding domain GntR PF00392.21 AHV92032.1 - 2.4e-17 62.4 1.0 6.9e-17 60.9 0.4 2.1 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family FCD PF07729.12 AHV92032.1 - 2e-09 37.9 4.9 3.5e-09 37.1 4.9 1.4 1 0 0 1 1 1 1 FCD domain TrmB PF01978.19 AHV92032.1 - 0.017 15.0 0.0 0.032 14.1 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Hormone_3 PF00159.18 AHV92032.1 - 0.043 13.9 0.4 0.11 12.5 0.4 1.7 1 0 0 1 1 1 0 Pancreatic hormone peptide SAICAR_synt PF01259.18 AHV92033.1 - 3.3e-101 338.1 0.0 3.9e-101 337.9 0.0 1.0 1 0 0 1 1 1 1 SAICAR synthetase TctC PF03401.14 AHV92034.1 - 1.5e-78 263.7 0.0 1.7e-78 263.4 0.0 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor CPBP PF02517.16 AHV92036.1 - 4.9e-11 42.9 4.9 5.7e-11 42.6 4.9 1.1 1 0 0 1 1 1 1 CPBP intramembrane metalloprotease Amidohydro_1 PF01979.20 AHV92037.1 - 4.6e-13 49.2 0.0 5.1e-13 49.1 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 AHV92037.1 - 8.9e-06 25.4 0.2 1.1e-05 25.2 0.2 1.0 1 0 0 1 1 1 1 Amidohydrolase family FAD-oxidase_C PF02913.19 AHV92038.1 - 1.5e-69 234.4 0.1 1.8e-69 234.1 0.1 1.1 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 AHV92038.1 - 0.052 13.3 2.1 0.099 12.4 0.1 2.5 3 0 0 3 3 3 0 FAD binding domain MreB_Mbl PF06723.13 AHV92039.1 - 7.2e-147 488.4 4.9 8.1e-147 488.3 4.9 1.0 1 0 0 1 1 1 1 MreB/Mbl protein HSP70 PF00012.20 AHV92039.1 - 2.6e-14 52.4 0.0 4.9e-14 51.4 0.0 1.5 1 0 0 1 1 1 1 Hsp70 protein FtsA PF14450.6 AHV92039.1 - 1e-10 42.0 0.7 1e-09 38.7 0.0 2.4 2 1 0 2 2 2 1 Cell division protein FtsA Actin PF00022.19 AHV92039.1 - 1.8e-08 33.4 0.0 2.3e-07 29.8 0.0 2.0 1 1 1 2 2 2 1 Actin PilM_2 PF11104.8 AHV92039.1 - 8.5e-07 28.3 0.0 0.013 14.5 0.0 2.3 2 0 0 2 2 2 2 Type IV pilus assembly protein PilM; EutA PF06277.11 AHV92039.1 - 0.00019 20.4 0.3 0.0003 19.8 0.3 1.4 1 0 0 1 1 1 1 Ethanolamine utilisation protein EutA DDR PF08841.10 AHV92039.1 - 0.045 12.7 0.7 0.085 11.8 0.7 1.4 1 0 0 1 1 1 0 Diol dehydratase reactivase ATPase-like domain Ppx-GppA PF02541.16 AHV92039.1 - 0.054 12.9 0.4 0.12 11.8 0.4 1.5 1 0 0 1 1 1 0 Ppx/GppA phosphatase family Myco_arth_vir_N PF09610.10 AHV92040.1 - 1.9 8.7 4.3 2.6 8.2 4.3 1.2 1 0 0 1 1 1 0 Mycoplasma virulence signal region (Myco_arth_vir_N) ABC_tran PF00005.27 AHV92041.1 - 1.6e-30 106.4 0.0 2.1e-30 106.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 AHV92041.1 - 3.3e-13 50.1 0.0 6.9e-06 26.1 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 AHV92041.1 - 3.2e-06 26.7 0.1 0.07 12.6 0.0 2.4 2 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 AHV92041.1 - 3.7e-05 23.4 0.0 7.9e-05 22.3 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 AHV92041.1 - 6.6e-05 23.4 0.9 0.00036 21.0 0.8 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 AHV92041.1 - 0.0014 18.9 0.2 0.0053 17.0 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 AHV92041.1 - 0.0022 18.5 0.0 0.0031 18.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 AHV92041.1 - 0.0033 17.3 0.1 0.0065 16.4 0.1 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_25 PF13481.6 AHV92041.1 - 0.0098 15.5 0.2 0.031 13.9 0.0 1.9 2 1 0 2 2 2 1 AAA domain AAA_30 PF13604.6 AHV92041.1 - 0.011 15.5 0.3 0.028 14.1 0.3 1.8 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.6 AHV92041.1 - 0.016 14.9 0.0 0.46 10.1 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_28 PF13521.6 AHV92041.1 - 0.04 14.2 0.1 1.8 8.8 0.0 2.2 2 0 0 2 2 2 0 AAA domain ABC_ATPase PF09818.9 AHV92041.1 - 0.04 12.7 0.1 5.8 5.6 0.0 2.6 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA_33 PF13671.6 AHV92041.1 - 0.055 13.6 0.2 0.16 12.1 0.1 1.6 1 1 0 1 1 1 0 AAA domain HSM3_N PF18795.1 AHV92041.1 - 0.064 12.7 0.0 0.097 12.1 0.0 1.2 1 0 0 1 1 1 0 DNA mismatch repair protein HSM3, N terminal domain AAA_24 PF13479.6 AHV92041.1 - 0.23 11.2 0.0 0.6 9.8 0.0 1.7 2 0 0 2 2 2 0 AAA domain DUF4976 PF16347.5 AHV92042.1 - 2.2e-05 24.6 0.0 3.1e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4976) Sulfatase_C PF14707.6 AHV92042.1 - 0.00095 19.9 0.7 0.00095 19.9 0.7 2.0 1 1 1 2 2 2 1 C-terminal region of aryl-sulfatase Ysc84 PF04366.12 AHV92043.1 - 1.6e-05 24.6 0.5 1.6e-05 24.6 0.5 2.0 2 1 0 2 2 2 1 Las17-binding protein actin regulator DDE_Tnp_ISL3 PF01610.17 AHV92044.1 - 6.7e-65 219.2 1.2 9.3e-65 218.7 0.3 1.6 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV92044.1 - 1.4e-11 43.6 0.1 3.6e-11 42.3 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV92044.1 - 5.3e-09 36.6 11.2 1.1e-08 35.6 11.2 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV92044.1 - 0.0056 16.7 0.2 0.016 15.3 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain NOB1_Zn_bind PF08772.11 AHV92044.1 - 0.017 15.2 0.2 1.2 9.3 0.0 2.5 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like SLT_L PF14718.6 AHV92044.1 - 0.023 14.8 1.3 0.023 14.8 1.3 1.8 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain zf-IS66 PF13005.7 AHV92044.1 - 8.2 6.9 9.6 3.6 8.1 6.6 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 IGPD PF00475.18 AHV92045.1 - 8.4e-63 211.0 1.4 1.4e-62 210.2 1.1 1.5 2 0 0 2 2 2 1 Imidazoleglycerol-phosphate dehydratase Pox_J1 PF03338.15 AHV92045.1 - 0.14 12.0 0.0 0.2 11.5 0.0 1.2 1 0 0 1 1 1 0 Poxvirus J1 protein EutK_C PF16365.5 AHV92046.1 - 0.016 15.2 0.4 0.05 13.6 0.4 1.8 1 0 0 1 1 1 0 Ethanolamine utilization protein EutK C-terminus Chalcone_3 PF16036.5 AHV92048.1 - 4.2e-33 114.8 0.0 4.6e-33 114.7 0.0 1.0 1 0 0 1 1 1 1 Chalcone isomerase-like Ribosomal_S17 PF00366.20 AHV92049.1 - 2.9e-31 107.4 3.4 4.1e-31 106.9 3.4 1.2 1 0 0 1 1 1 1 Ribosomal protein S17 Aminotran_1_2 PF00155.21 AHV92050.1 - 2e-58 198.3 0.0 2.2e-58 198.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 AHV92050.1 - 0.0023 16.5 0.0 0.0033 16.0 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Alliinase_C PF04864.13 AHV92050.1 - 0.056 12.3 0.0 0.34 9.7 0.0 2.0 2 0 0 2 2 2 0 Allinase PDT PF00800.18 AHV92051.1 - 1.3e-61 207.7 0.0 1.9e-61 207.1 0.0 1.3 1 0 0 1 1 1 1 Prephenate dehydratase CM_2 PF01817.21 AHV92051.1 - 1.1e-22 80.2 0.0 1.9e-22 79.4 0.0 1.4 1 0 0 1 1 1 1 Chorismate mutase type II ACT PF01842.25 AHV92051.1 - 0.00053 19.7 0.0 0.00096 18.9 0.0 1.5 1 0 0 1 1 1 1 ACT domain HrpE PF06188.12 AHV92051.1 - 0.016 15.1 0.1 0.032 14.1 0.1 1.5 1 0 0 1 1 1 0 HrpE/YscL/FliH and V-type ATPase subunit E DUF2574 PF10836.8 AHV92051.1 - 0.088 12.7 0.0 0.32 10.9 0.0 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF2574) HTH_1 PF00126.27 AHV92052.1 - 4.4e-18 65.0 0.1 4.5e-18 64.9 0.1 1.0 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_30 PF13556.6 AHV92052.1 - 0.026 14.3 0.0 0.033 14.0 0.0 1.1 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain MarR_2 PF12802.7 AHV92052.1 - 0.045 13.7 0.1 0.056 13.3 0.1 1.3 1 0 0 1 1 1 0 MarR family MarR PF01047.22 AHV92052.1 - 0.046 13.7 0.1 0.067 13.1 0.1 1.4 1 1 0 1 1 1 0 MarR family GNAT_like PF18407.1 AHV92052.1 - 0.15 12.4 0.0 0.17 12.2 0.0 1.1 1 0 0 1 1 1 0 GCN5-related N-acetyltransferase like domain Peripla_BP_6 PF13458.6 AHV92053.1 - 7.3e-41 141.0 0.5 8.3e-41 140.8 0.5 1.0 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 AHV92053.1 - 1.1e-14 54.3 0.0 1.5e-14 53.8 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.28 AHV92053.1 - 3.8e-12 46.0 0.0 4.3e-12 45.8 0.0 1.0 1 0 0 1 1 1 1 Receptor family ligand binding region Pyr_redox_2 PF07992.14 AHV92053.1 - 0.0036 16.6 0.1 0.0055 16.0 0.1 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase CusF_Ec PF11604.8 AHV92054.1 - 2.7e-24 84.9 0.9 3.4e-24 84.6 0.0 1.6 2 0 0 2 2 2 1 Copper binding periplasmic protein CusF DUF1344 PF07076.11 AHV92054.1 - 0.0012 18.7 0.0 0.48 10.4 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF1344) Fimbrial_PilY2 PF14481.6 AHV92054.1 - 0.0093 15.6 0.0 0.011 15.4 0.0 1.1 1 0 0 1 1 1 1 Type 4 fimbrial biogenesis protein PilY2 GreA_GreB PF01272.19 AHV92054.1 - 0.03 14.2 0.0 3.6 7.5 0.0 2.1 2 0 0 2 2 2 0 Transcription elongation factor, GreA/GreB, C-term rve PF00665.26 AHV92055.1 - 2.6e-31 108.3 0.6 4e-31 107.7 0.1 1.6 2 0 0 2 2 1 1 Integrase core domain LZ_Tnp_IS481 PF13011.6 AHV92055.1 - 7.3e-22 77.7 2.7 1.1e-19 70.7 0.4 2.7 1 1 1 2 2 2 1 leucine-zipper of insertion element IS481 rve_3 PF13683.6 AHV92055.1 - 4.3e-18 64.8 2.4 1e-17 63.6 2.4 1.7 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.6 AHV92055.1 - 5.4e-17 61.1 4.4 1.2e-07 31.3 0.1 2.8 2 0 0 2 2 2 2 Homeodomain-like domain HTH_28 PF13518.6 AHV92055.1 - 5.5e-16 58.4 5.8 5.9e-11 42.3 0.1 3.5 4 0 0 4 4 3 2 Helix-turn-helix domain HTH_29 PF13551.6 AHV92055.1 - 7.2e-12 45.2 0.8 2.6e-06 27.4 0.0 2.9 3 0 0 3 3 2 2 Winged helix-turn helix HTH_32 PF13565.6 AHV92055.1 - 9.4e-11 42.2 0.7 9.4e-11 42.2 0.7 2.4 2 1 0 2 2 2 1 Homeodomain-like domain HTH_38 PF13936.6 AHV92055.1 - 1.5e-06 27.9 0.6 5.1e-06 26.1 0.5 2.1 2 0 0 2 2 1 1 Helix-turn-helix domain MarR_2 PF12802.7 AHV92055.1 - 7.7e-06 25.7 3.1 9.5e-05 22.2 1.2 2.6 2 0 0 2 2 2 1 MarR family HTH_31 PF13560.6 AHV92055.1 - 2.8e-05 24.3 2.8 0.00059 20.1 0.4 3.2 3 0 0 3 3 3 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 AHV92055.1 - 3e-05 23.6 0.1 0.0064 16.1 0.3 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 AHV92055.1 - 4.3e-05 23.0 0.1 0.00056 19.4 0.2 2.5 2 0 0 2 2 2 1 Sigma-70, region 4 YdaS_antitoxin PF15943.5 AHV92055.1 - 0.00021 21.1 0.2 0.24 11.3 0.0 2.8 2 0 0 2 2 2 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_Tnp_ISL3 PF13542.6 AHV92055.1 - 0.00025 20.4 8.3 0.002 17.5 0.6 3.9 4 0 0 4 4 3 1 Helix-turn-helix domain of transposase family ISL3 HTH_24 PF13412.6 AHV92055.1 - 0.00027 20.4 0.2 0.0021 17.6 0.3 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_3 PF01381.22 AHV92055.1 - 0.00032 20.7 0.7 0.013 15.5 0.3 2.5 2 0 0 2 2 2 1 Helix-turn-helix HTH_Crp_2 PF13545.6 AHV92055.1 - 0.0004 20.3 0.3 0.0027 17.6 0.2 2.3 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain Trp_repressor PF01371.19 AHV92055.1 - 0.00081 19.5 0.2 0.006 16.7 0.1 2.2 2 0 0 2 2 2 1 Trp repressor protein CENP-B_N PF04218.13 AHV92055.1 - 0.0016 18.0 0.0 1.6 8.5 0.1 2.3 2 0 0 2 2 2 1 CENP-B N-terminal DNA-binding domain LacI PF00356.21 AHV92055.1 - 0.0017 18.1 1.8 0.0046 16.7 0.7 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family Fe_dep_repress PF01325.19 AHV92055.1 - 0.002 18.3 0.0 0.034 14.4 0.1 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.20 AHV92055.1 - 0.0022 17.8 0.0 0.93 9.4 0.0 2.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 AHV92055.1 - 0.0024 17.6 1.3 0.035 13.9 0.7 2.5 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_psq PF05225.16 AHV92055.1 - 0.0025 17.5 0.7 2.3 8.0 0.4 2.9 3 0 0 3 3 3 1 helix-turn-helix, Psq domain HTH_11 PF08279.12 AHV92055.1 - 0.0025 17.7 0.4 0.015 15.3 0.5 2.2 2 0 0 2 2 2 1 HTH domain SpoIIID PF12116.8 AHV92055.1 - 0.0026 17.8 0.0 1.1 9.4 0.0 2.4 2 0 0 2 2 2 1 Stage III sporulation protein D HTH_AsnC-type PF13404.6 AHV92055.1 - 0.0035 17.2 2.7 0.045 13.6 1.1 2.9 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_17 PF12728.7 AHV92055.1 - 0.0035 17.5 1.0 6.1 7.1 0.0 3.5 3 1 0 3 3 3 0 Helix-turn-helix domain RepB PF07506.11 AHV92055.1 - 0.0042 17.2 0.1 0.55 10.3 0.1 2.3 1 1 1 2 2 2 1 RepB plasmid partitioning protein GntR PF00392.21 AHV92055.1 - 0.005 16.5 0.8 0.5 10.1 0.3 2.6 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_Tnp_1 PF01527.20 AHV92055.1 - 0.0051 17.1 0.5 0.11 12.8 0.0 2.7 1 1 1 2 2 2 1 Transposase HTH_36 PF13730.6 AHV92055.1 - 0.0064 16.4 0.0 0.58 10.2 0.0 3.1 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_10 PF04967.12 AHV92055.1 - 0.0075 16.1 0.1 0.049 13.4 0.2 2.2 3 0 0 3 3 2 1 HTH DNA binding domain HTH_35 PF13693.6 AHV92055.1 - 0.0087 16.1 1.6 0.073 13.1 0.6 2.8 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding UPF0175 PF03683.13 AHV92055.1 - 0.014 15.1 0.4 0.1 12.3 0.1 2.4 2 1 0 2 2 2 0 Uncharacterised protein family (UPF0175) HTH_30 PF13556.6 AHV92055.1 - 0.015 15.1 0.1 2 8.3 0.0 2.5 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain HTH_37 PF13744.6 AHV92055.1 - 0.016 15.2 0.1 0.13 12.3 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Tnp_4 PF13613.6 AHV92055.1 - 0.016 14.9 0.1 0.067 12.9 0.0 2.0 2 0 0 2 2 1 0 Helix-turn-helix of DDE superfamily endonuclease KORA PF16509.5 AHV92055.1 - 0.034 14.4 0.1 3.6 8.0 0.0 3.0 3 0 0 3 3 3 0 TrfB plasmid transcriptional repressor DDE_Tnp_IS240 PF13610.6 AHV92055.1 - 0.043 14.0 0.1 0.064 13.5 0.1 1.3 1 0 0 1 1 1 0 DDE domain MarR PF01047.22 AHV92055.1 - 0.045 13.7 0.1 0.14 12.1 0.1 1.8 2 0 0 2 2 1 0 MarR family Crp PF00325.20 AHV92055.1 - 0.049 13.3 3.2 0.062 13.0 0.5 2.6 3 0 0 3 3 3 0 Bacterial regulatory proteins, crp family P22_Cro PF14549.6 AHV92055.1 - 0.052 13.4 1.6 9.6 6.1 0.1 2.5 2 0 0 2 2 2 0 DNA-binding transcriptional regulator Cro DUF746 PF05344.11 AHV92055.1 - 0.087 12.7 0.1 0.98 9.3 0.0 2.3 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) HTH_1 PF00126.27 AHV92055.1 - 0.1 12.6 2.8 4.7 7.2 0.5 2.6 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_26 PF13443.6 AHV92055.1 - 0.17 12.3 0.0 3.6 8.1 0.1 2.8 3 0 0 3 3 3 0 Cro/C1-type HTH DNA-binding domain HTH_8 PF02954.19 AHV92055.1 - 0.24 11.2 2.4 14 5.5 0.7 3.2 3 0 0 3 3 3 0 Bacterial regulatory protein, Fis family HTH_Tnp_Tc3_2 PF01498.18 AHV92055.1 - 0.25 11.6 2.6 0.47 10.7 0.1 2.7 3 0 0 3 3 1 0 Transposase HTH_33 PF13592.6 AHV92055.1 - 0.67 9.6 3.2 2.9 7.6 0.1 3.3 4 0 0 4 4 2 0 Winged helix-turn helix MerR PF00376.23 AHV92055.1 - 0.71 9.7 6.8 3.2 7.6 0.0 3.6 4 0 0 4 4 2 0 MerR family regulatory protein Peptidase_M20 PF01546.28 AHV92056.1 - 1.3e-20 74.1 0.0 1.7e-20 73.6 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 AHV92056.1 - 8.6e-13 48.2 0.0 1.6e-12 47.3 0.0 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain DDE_Tnp_ISL3 PF01610.17 AHV92057.1 - 5.8e-39 134.2 1.8 1.5e-22 80.5 0.2 2.7 2 1 1 3 3 3 2 Transposase HTH_Tnp_ISL3 PF13542.6 AHV92057.1 - 1e-11 44.0 0.1 2.7e-11 42.7 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV92057.1 - 4.5e-09 36.8 11.2 8.5e-09 35.9 11.2 1.5 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV92057.1 - 0.0042 17.1 0.2 0.012 15.6 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain NOB1_Zn_bind PF08772.11 AHV92057.1 - 0.011 15.9 0.2 0.95 9.7 0.0 2.5 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like SLT_L PF14718.6 AHV92057.1 - 0.012 15.7 1.5 0.012 15.7 1.5 1.8 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain zf-IS66 PF13005.7 AHV92057.1 - 3.7 8.0 8.8 2.7 8.5 6.6 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 LptF_LptG PF03739.14 AHV92058.1 - 2.4e-51 174.7 0.2 3e-51 174.4 0.2 1.0 1 0 0 1 1 1 1 Lipopolysaccharide export system permease LptF/LptG 3HCDH_N PF02737.18 AHV92059.1 - 4e-60 202.8 0.0 6.6e-60 202.1 0.0 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.22 AHV92059.1 - 5.3e-23 81.5 0.0 3.3e-22 78.9 0.0 2.1 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_Gly3P_dh_N PF01210.23 AHV92059.1 - 2.4e-06 27.6 0.0 6.5e-06 26.2 0.0 1.6 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.16 AHV92059.1 - 7.1e-06 25.7 0.1 5.9e-05 22.8 0.0 2.3 1 1 1 2 2 2 1 Ketopantoate reductase PanE/ApbA NAD_binding_2 PF03446.15 AHV92059.1 - 0.00042 20.5 0.0 0.001 19.2 0.0 1.8 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase DAO PF01266.24 AHV92059.1 - 0.0012 18.5 0.0 0.0023 17.6 0.0 1.4 1 1 0 1 1 1 1 FAD dependent oxidoreductase F420_oxidored PF03807.17 AHV92059.1 - 0.0027 18.2 0.2 0.0079 16.7 0.2 1.8 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_N PF03721.14 AHV92059.1 - 0.0045 16.6 0.0 0.0068 16.0 0.0 1.2 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox_2 PF07992.14 AHV92059.1 - 0.014 14.7 0.0 0.028 13.7 0.0 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 AHV92059.1 - 0.034 14.4 0.1 0.09 13.0 0.1 1.8 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Shikimate_DH PF01488.20 AHV92059.1 - 0.07 13.2 0.0 0.14 12.3 0.0 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase adh_short_C2 PF13561.6 AHV92059.1 - 0.071 12.6 0.4 0.34 10.4 0.4 2.1 1 1 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase TrkA_N PF02254.18 AHV92059.1 - 0.085 13.1 0.0 0.18 12.1 0.0 1.7 1 1 0 1 1 1 0 TrkA-N domain Sacchrp_dh_NADP PF03435.18 AHV92059.1 - 0.088 13.1 0.1 0.2 11.9 0.1 1.6 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain 2-Hacid_dh_C PF02826.19 AHV92059.1 - 0.11 11.8 0.0 0.26 10.6 0.0 1.6 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ThiF PF00899.21 AHV92059.1 - 0.22 10.8 0.9 0.84 8.9 0.6 1.8 1 1 1 2 2 2 0 ThiF family DctQ PF04290.12 AHV92060.1 - 2e-22 79.5 8.7 2e-22 79.5 8.7 1.5 1 1 1 2 2 2 1 Tripartite ATP-independent periplasmic transporters, DctQ component DUF2568 PF10823.8 AHV92060.1 - 0.33 11.2 12.4 0.65 10.3 5.0 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF2568) Multi_Drug_Res PF00893.19 AHV92061.1 - 8.8e-32 109.6 8.3 1.2e-31 109.2 8.3 1.1 1 0 0 1 1 1 1 Small Multidrug Resistance protein EamA PF00892.20 AHV92061.1 - 8e-05 22.8 11.9 9.3e-05 22.6 11.9 1.2 1 0 0 1 1 1 1 EamA-like transporter family TMEM234 PF10639.9 AHV92061.1 - 0.0041 17.2 2.5 0.0045 17.0 2.0 1.3 1 1 0 1 1 1 1 Putative transmembrane family 234 UPF0060 PF02694.15 AHV92061.1 - 0.0062 16.8 8.4 0.0074 16.5 8.4 1.2 1 1 0 1 1 1 1 Uncharacterised BCR, YnfA/UPF0060 family DDE_Tnp_ISL3 PF01610.17 AHV92062.1 - 1.3e-13 51.2 0.3 1.4e-13 51.1 0.3 1.0 1 0 0 1 1 1 1 Transposase YajC PF02699.15 AHV92063.1 - 1.3e-29 101.9 0.2 1.5e-29 101.6 0.2 1.1 1 0 0 1 1 1 1 Preprotein translocase subunit EIID-AGA PF03613.14 AHV92063.1 - 0.0015 17.7 0.1 0.0018 17.5 0.1 1.0 1 0 0 1 1 1 1 PTS system mannose/fructose/sorbose family IID component CitMHS PF03600.16 AHV92063.1 - 0.045 12.9 0.1 0.045 12.9 0.1 1.1 1 0 0 1 1 1 0 Citrate transporter Orf78 PF06024.12 AHV92063.1 - 0.06 13.7 0.0 0.087 13.1 0.0 1.2 1 0 0 1 1 1 0 Orf78 (ac78) Hint_2 PF13403.6 AHV92063.1 - 0.09 13.1 0.0 0.11 12.8 0.0 1.1 1 0 0 1 1 1 0 Hint domain TctC PF03401.14 AHV92064.1 - 2.5e-83 279.3 0.1 2.9e-83 279.1 0.1 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor SLT PF01464.20 AHV92065.1 - 0.0025 17.5 0.0 0.0033 17.1 0.0 1.2 1 0 0 1 1 1 1 Transglycosylase SLT domain APT PF03440.14 AHV92066.1 - 0.00059 19.8 0.0 0.001 19.0 0.0 1.3 1 0 0 1 1 1 1 Aerolysin/Pertussis toxin (APT) domain Pertussis_S2S3 PF02918.15 AHV92066.1 - 0.0036 17.2 0.0 0.0055 16.6 0.0 1.3 1 0 0 1 1 1 1 Pertussis toxin, subunit 2 and 3, C-terminal domain ABC_tran PF00005.27 AHV92068.1 - 2.6e-24 86.3 0.0 3.3e-24 85.9 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 AHV92068.1 - 1.4e-05 25.0 2.0 0.017 15.0 0.2 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system BCA_ABC_TP_C PF12399.8 AHV92068.1 - 5.5e-05 23.0 0.0 0.0001 22.2 0.0 1.5 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_23 PF13476.6 AHV92068.1 - 0.0002 21.9 0.1 0.00032 21.3 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 AHV92068.1 - 0.0062 16.9 0.5 0.0099 16.3 0.5 1.5 1 1 0 1 1 1 1 AAA ATPase domain SRP54 PF00448.22 AHV92068.1 - 0.0074 15.9 0.5 0.012 15.3 0.5 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SMC_N PF02463.19 AHV92068.1 - 0.0075 15.7 0.3 0.13 11.6 0.1 2.0 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 AHV92068.1 - 0.0077 16.1 0.1 0.014 15.3 0.1 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_29 PF13555.6 AHV92068.1 - 0.029 14.1 0.0 0.056 13.2 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_30 PF13604.6 AHV92068.1 - 0.044 13.5 1.2 0.079 12.7 1.2 1.7 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 AHV92068.1 - 0.096 12.8 0.5 0.21 11.7 0.1 1.8 2 1 0 2 2 2 0 50S ribosome-binding GTPase AAA_22 PF13401.6 AHV92068.1 - 0.13 12.5 0.2 0.25 11.6 0.2 1.8 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 AHV92068.1 - 0.15 12.3 2.6 0.67 10.1 0.1 2.2 1 1 0 2 2 2 0 AAA domain PQQ PF01011.21 AHV92069.1 - 0.094 12.7 0.0 0.14 12.1 0.0 1.3 1 0 0 1 1 1 0 PQQ enzyme repeat 4HFCP_synth PF04476.13 AHV92069.1 - 0.11 12.1 0.1 0.12 12.1 0.1 1.0 1 0 0 1 1 1 0 4-HFC-P synthase MlaD PF02470.20 AHV92070.1 - 0.00014 22.1 0.0 0.00019 21.7 0.0 1.2 1 0 0 1 1 1 1 MlaD protein SLATT_1 PF18181.1 AHV92070.1 - 0.11 12.4 0.1 0.13 12.2 0.1 1.1 1 0 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain 1 DHFR_1 PF00186.19 AHV92071.1 - 1.2e-57 194.1 0.0 1.4e-57 193.9 0.0 1.0 1 0 0 1 1 1 1 Dihydrofolate reductase US2 PF02476.15 AHV92071.1 - 0.029 15.1 0.2 0.05 14.3 0.1 1.5 2 0 0 2 2 2 0 US2 family Acylphosphatase PF00708.18 AHV92072.1 - 3.9e-24 84.9 0.2 4.3e-24 84.7 0.2 1.0 1 0 0 1 1 1 1 Acylphosphatase bMG5 PF17972.1 AHV92074.1 - 6.7e-39 133.2 0.0 3.9e-37 127.4 0.0 3.1 2 0 0 2 2 2 1 Bacterial Alpha-2-macroglobulin MG5 domain bMG6 PF17962.1 AHV92074.1 - 3e-33 114.3 0.1 8.7e-31 106.4 0.3 3.0 2 0 0 2 2 2 1 Bacterial macroglobulin domain 6 bMG10 PF17973.1 AHV92074.1 - 1e-26 93.6 0.1 1.1e-25 90.4 0.0 2.5 2 0 0 2 2 2 1 Bacterial Alpha-2-macroglobulin MG10 domain MG2 PF01835.19 AHV92074.1 - 1.8e-19 70.0 0.1 7.9e-17 61.5 0.0 4.0 2 1 0 2 2 2 1 MG2 domain TED_complement PF07678.14 AHV92074.1 - 3.7e-14 52.5 0.0 6.1e-14 51.8 0.0 1.2 1 0 0 1 1 1 1 A-macroglobulin TED domain A2M PF00207.22 AHV92074.1 - 3.2e-13 49.3 0.0 7.5e-13 48.1 0.0 1.6 1 0 0 1 1 1 1 Alpha-2-macroglobulin family A2M_BRD PF07703.14 AHV92074.1 - 9.3e-13 48.7 0.0 1.3e-11 45.0 0.0 2.9 3 1 0 3 3 3 1 Alpha-2-macroglobulin bait region domain DUF11 PF01345.18 AHV92074.1 - 0.036 14.4 0.9 0.5 10.7 0.0 3.3 3 0 0 3 3 3 0 Domain of unknown function DUF11 MG4 PF17789.1 AHV92074.1 - 0.15 12.2 0.0 0.69 10.1 0.0 2.1 1 0 0 1 1 1 0 Macroglobulin domain MG4 FixG_C PF11614.8 AHV92074.1 - 0.23 11.7 0.4 5 7.4 0.0 3.4 4 1 0 4 4 4 0 IG-like fold at C-terminal of FixG, putative oxidoreductase Aldedh PF00171.22 AHV92075.1 - 5.8e-154 513.0 0.0 6.5e-154 512.8 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family OmdA PF13376.6 AHV92075.1 - 0.018 15.0 0.6 0.036 14.1 0.6 1.5 1 0 0 1 1 1 0 Bacteriocin-protection, YdeI or OmpD-Associated Usp PF00582.26 AHV92076.1 - 1.4e-29 103.4 0.2 1.6e-29 103.2 0.2 1.0 1 0 0 1 1 1 1 Universal stress protein family ETF PF01012.21 AHV92076.1 - 0.0016 18.4 5.4 0.019 14.8 2.4 2.1 1 1 1 2 2 2 2 Electron transfer flavoprotein domain DAGK_cat PF00781.24 AHV92076.1 - 0.074 12.7 0.1 0.12 11.9 0.1 1.3 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain ATP_bind_3 PF01171.20 AHV92077.1 - 1.7e-45 155.1 0.1 2.4e-45 154.5 0.1 1.2 1 0 0 1 1 1 1 PP-loop family TilS PF09179.11 AHV92077.1 - 1.9e-15 57.1 11.1 1.9e-15 57.1 11.1 2.8 3 0 0 3 3 3 1 TilS substrate binding domain DUF2917 PF11142.8 AHV92077.1 - 0.021 14.2 0.4 0.072 12.5 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2917) tRNA_Me_trans PF03054.16 AHV92077.1 - 0.21 10.3 0.1 0.31 9.8 0.1 1.2 1 0 0 1 1 1 0 tRNA methyl transferase MFS_1 PF07690.16 AHV92078.1 - 1.3e-30 106.5 68.2 1.4e-30 106.4 57.5 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_4 PF06779.14 AHV92078.1 - 1.9e-05 24.1 34.6 1.9e-05 24.1 34.6 2.3 1 1 2 3 3 3 2 Uncharacterised MFS-type transporter YbfB FUR PF01475.19 AHV92080.1 - 8.8e-46 155.0 0.0 1e-45 154.7 0.0 1.0 1 0 0 1 1 1 1 Ferric uptake regulator family TF_Zn_Ribbon PF08271.12 AHV92080.1 - 0.0042 16.6 1.5 0.0049 16.4 0.1 1.8 2 0 0 2 2 2 1 TFIIB zinc-binding HTH_Crp_2 PF13545.6 AHV92080.1 - 0.033 14.2 0.1 0.064 13.2 0.0 1.5 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain Nudix_N_2 PF14803.6 AHV92080.1 - 0.041 13.8 0.1 0.041 13.8 0.1 1.9 2 0 0 2 2 2 0 Nudix N-terminal MarR PF01047.22 AHV92080.1 - 0.048 13.6 0.0 0.087 12.8 0.0 1.4 1 0 0 1 1 1 0 MarR family PadR PF03551.14 AHV92080.1 - 0.065 13.2 0.0 0.1 12.6 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family SR1P PF13790.6 AHV92080.1 - 0.093 12.9 1.9 4.8 7.4 0.1 2.3 2 0 0 2 2 2 0 SR1 protein HTH_IclR PF09339.10 AHV92080.1 - 0.19 11.6 0.0 0.94 9.3 0.0 1.9 1 1 0 1 1 1 0 IclR helix-turn-helix domain A_deaminase PF00962.22 AHV92081.1 - 1.9e-72 244.3 0.0 2.2e-72 244.2 0.0 1.0 1 0 0 1 1 1 1 Adenosine/AMP deaminase HAD_2 PF13419.6 AHV92082.1 - 1.9e-23 83.5 0.0 2.1e-23 83.3 0.0 1.0 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 AHV92082.1 - 1.5e-17 64.6 0.0 5.1e-17 62.9 0.0 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 AHV92082.1 - 2.9e-06 27.2 0.2 5.6e-06 26.3 0.2 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase_6 PF13344.6 AHV92082.1 - 7e-05 22.9 0.0 0.0018 18.3 0.0 2.4 2 1 0 2 2 2 1 Haloacid dehalogenase-like hydrolase HAD PF12710.7 AHV92082.1 - 0.012 16.1 0.0 0.016 15.6 0.0 1.2 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase Mem_trans PF03547.18 AHV92083.1 - 1.3e-10 40.3 10.7 1.3e-10 40.3 10.7 1.5 1 1 0 1 1 1 1 Membrane transport protein SBF PF01758.16 AHV92083.1 - 0.0036 17.0 7.7 0.0036 17.0 7.7 1.9 2 0 0 2 2 2 1 Sodium Bile acid symporter family rve PF00665.26 AHV92085.1 - 2.9e-32 111.3 0.7 4.3e-32 110.8 0.1 1.6 2 0 0 2 2 1 1 Integrase core domain LZ_Tnp_IS481 PF13011.6 AHV92085.1 - 7.7e-22 77.6 2.7 1.1e-19 70.7 0.4 2.6 1 1 1 2 2 2 1 leucine-zipper of insertion element IS481 rve_3 PF13683.6 AHV92085.1 - 5e-19 67.8 2.7 1.2e-18 66.6 2.7 1.7 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.6 AHV92085.1 - 6.1e-17 60.9 4.4 1.2e-07 31.3 0.1 2.7 2 0 0 2 2 2 2 Homeodomain-like domain HTH_28 PF13518.6 AHV92085.1 - 1.5e-15 57.1 6.5 5.9e-11 42.3 0.1 3.4 4 0 0 4 4 3 2 Helix-turn-helix domain HTH_29 PF13551.6 AHV92085.1 - 9.8e-12 44.7 0.6 2.6e-06 27.4 0.0 2.6 2 0 0 2 2 2 2 Winged helix-turn helix HTH_32 PF13565.6 AHV92085.1 - 9.4e-11 42.2 0.7 9.4e-11 42.2 0.7 2.4 2 1 0 2 2 2 1 Homeodomain-like domain HTH_38 PF13936.6 AHV92085.1 - 1.5e-06 27.9 0.6 5.1e-06 26.1 0.5 2.1 2 0 0 2 2 1 1 Helix-turn-helix domain MarR_2 PF12802.7 AHV92085.1 - 8e-06 25.6 3.1 9.5e-05 22.2 1.2 2.6 2 0 0 2 2 2 1 MarR family HTH_31 PF13560.6 AHV92085.1 - 1.4e-05 25.4 1.7 0.00059 20.1 0.4 3.2 3 0 0 3 3 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 AHV92085.1 - 3e-05 23.6 0.1 0.0064 16.1 0.3 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 AHV92085.1 - 4.6e-05 22.9 0.1 0.00056 19.4 0.2 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 YdaS_antitoxin PF15943.5 AHV92085.1 - 0.00022 21.0 0.2 0.24 11.3 0.0 2.8 2 0 0 2 2 2 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_Tnp_ISL3 PF13542.6 AHV92085.1 - 0.00023 20.5 8.5 0.002 17.5 0.6 3.9 4 0 0 4 4 3 1 Helix-turn-helix domain of transposase family ISL3 HTH_24 PF13412.6 AHV92085.1 - 0.00028 20.4 0.2 0.0021 17.6 0.3 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_3 PF01381.22 AHV92085.1 - 0.00032 20.7 0.7 0.013 15.5 0.3 2.5 2 0 0 2 2 2 1 Helix-turn-helix HTH_Crp_2 PF13545.6 AHV92085.1 - 0.0004 20.3 0.3 0.0027 17.6 0.2 2.3 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain Trp_repressor PF01371.19 AHV92085.1 - 0.00081 19.5 0.2 0.006 16.7 0.1 2.2 2 0 0 2 2 2 1 Trp repressor protein CENP-B_N PF04218.13 AHV92085.1 - 0.0016 18.0 0.0 1.6 8.5 0.1 2.3 2 0 0 2 2 2 1 CENP-B N-terminal DNA-binding domain LacI PF00356.21 AHV92085.1 - 0.0017 18.1 1.8 0.0046 16.7 0.7 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family Fe_dep_repress PF01325.19 AHV92085.1 - 0.002 18.3 0.0 0.034 14.4 0.1 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.20 AHV92085.1 - 0.0023 17.8 0.0 0.93 9.4 0.0 2.5 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 AHV92085.1 - 0.0025 17.6 1.3 0.035 13.9 0.7 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_psq PF05225.16 AHV92085.1 - 0.0025 17.5 0.7 2.3 8.0 0.4 2.9 3 0 0 3 3 3 1 helix-turn-helix, Psq domain HTH_11 PF08279.12 AHV92085.1 - 0.0026 17.7 0.4 0.015 15.3 0.5 2.2 2 0 0 2 2 2 1 HTH domain SpoIIID PF12116.8 AHV92085.1 - 0.0026 17.8 0.0 1.1 9.4 0.0 2.4 2 0 0 2 2 2 1 Stage III sporulation protein D HTH_AsnC-type PF13404.6 AHV92085.1 - 0.0036 17.1 2.7 0.045 13.6 1.1 2.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain RepB PF07506.11 AHV92085.1 - 0.0042 17.2 0.1 0.55 10.3 0.1 2.3 1 1 1 2 2 2 1 RepB plasmid partitioning protein HTH_17 PF12728.7 AHV92085.1 - 0.0043 17.2 0.7 6.1 7.1 0.0 3.3 3 1 0 3 3 3 0 Helix-turn-helix domain HTH_Tnp_1 PF01527.20 AHV92085.1 - 0.005 17.1 0.5 0.11 12.8 0.0 2.7 1 1 1 2 2 2 1 Transposase GntR PF00392.21 AHV92085.1 - 0.0053 16.4 0.8 0.5 10.1 0.3 2.5 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_10 PF04967.12 AHV92085.1 - 0.0077 16.0 0.1 0.049 13.4 0.2 2.2 2 0 0 2 2 2 1 HTH DNA binding domain HTH_35 PF13693.6 AHV92085.1 - 0.0093 16.0 1.5 0.073 13.1 0.6 2.7 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding UPF0175 PF03683.13 AHV92085.1 - 0.014 15.1 0.4 0.1 12.3 0.1 2.4 2 1 0 2 2 2 0 Uncharacterised protein family (UPF0175) HTH_30 PF13556.6 AHV92085.1 - 0.015 15.1 0.1 2 8.3 0.0 2.6 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain HTH_37 PF13744.6 AHV92085.1 - 0.016 15.2 0.1 0.13 12.3 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Tnp_4 PF13613.6 AHV92085.1 - 0.016 14.9 0.1 0.067 12.9 0.0 2.0 2 0 0 2 2 1 0 Helix-turn-helix of DDE superfamily endonuclease HTH_36 PF13730.6 AHV92085.1 - 0.02 14.8 0.1 0.58 10.2 0.0 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain KORA PF16509.5 AHV92085.1 - 0.034 14.4 0.1 3.6 8.0 0.0 3.0 3 0 0 3 3 3 0 TrfB plasmid transcriptional repressor MarR PF01047.22 AHV92085.1 - 0.045 13.7 0.1 0.14 12.1 0.1 1.8 2 0 0 2 2 1 0 MarR family DDE_Tnp_IS240 PF13610.6 AHV92085.1 - 0.048 13.9 0.1 0.071 13.3 0.1 1.3 1 0 0 1 1 1 0 DDE domain Crp PF00325.20 AHV92085.1 - 0.05 13.3 3.2 0.062 13.0 0.5 2.5 3 0 0 3 3 3 0 Bacterial regulatory proteins, crp family P22_Cro PF14549.6 AHV92085.1 - 0.051 13.4 1.6 9.6 6.1 0.1 2.5 2 0 0 2 2 2 0 DNA-binding transcriptional regulator Cro DUF746 PF05344.11 AHV92085.1 - 0.085 12.7 0.1 0.98 9.3 0.0 2.3 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) HTH_1 PF00126.27 AHV92085.1 - 0.1 12.5 2.8 4.7 7.2 0.5 2.6 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_26 PF13443.6 AHV92085.1 - 0.17 12.3 0.0 3.6 8.1 0.1 2.8 3 0 0 3 3 3 0 Cro/C1-type HTH DNA-binding domain HTH_8 PF02954.19 AHV92085.1 - 0.19 11.5 0.9 14 5.5 0.7 2.7 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family HTH_Tnp_Tc3_2 PF01498.18 AHV92085.1 - 0.27 11.5 2.6 0.47 10.7 0.1 2.6 3 0 0 3 3 1 0 Transposase HTH_33 PF13592.6 AHV92085.1 - 0.56 9.9 3.1 2.9 7.6 0.1 3.4 4 0 0 4 4 2 0 Winged helix-turn helix MerR PF00376.23 AHV92085.1 - 0.72 9.7 6.8 3.2 7.6 0.0 3.6 4 0 0 4 4 2 0 MerR family regulatory protein SBP_bac_3 PF00497.20 AHV92086.1 - 1.5e-61 207.7 0.3 1.7e-61 207.5 0.3 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Lig_chan-Glu_bd PF10613.9 AHV92086.1 - 1.5e-05 25.2 0.0 0.00017 21.8 0.0 2.3 1 1 0 1 1 1 1 Ligated ion channel L-glutamate- and glycine-binding site Phosphonate-bd PF12974.7 AHV92086.1 - 0.021 14.4 0.0 0.054 13.1 0.0 1.6 1 1 0 1 1 1 0 ABC transporter, phosphonate, periplasmic substrate-binding protein LPAM_2 PF13627.6 AHV92086.1 - 0.16 11.8 2.7 0.26 11.2 2.7 1.4 1 0 0 1 1 1 0 Prokaryotic lipoprotein-attachment site Response_reg PF00072.24 AHV92087.1 - 1.3e-32 112.2 0.0 2e-32 111.7 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 AHV92087.1 - 1.9e-21 75.9 0.0 3.6e-21 75.0 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal FleQ PF06490.11 AHV92087.1 - 0.1 13.0 0.0 0.69 10.3 0.0 2.1 2 0 0 2 2 2 0 Flagellar regulatory protein FleQ ABC_membrane PF00664.23 AHV92088.1 - 3.1e-41 141.8 5.3 3.9e-41 141.5 5.3 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 AHV92088.1 - 4.1e-33 114.8 0.0 7.5e-33 113.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 AHV92088.1 - 1e-07 31.7 0.1 1.7e-06 27.7 0.1 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 AHV92088.1 - 0.00059 20.3 0.3 0.0028 18.1 0.3 2.2 1 1 0 1 1 1 1 AAA ATPase domain Zeta_toxin PF06414.12 AHV92088.1 - 0.0015 17.9 0.1 0.0027 17.0 0.1 1.3 1 0 0 1 1 1 1 Zeta toxin RsgA_GTPase PF03193.16 AHV92088.1 - 0.0037 17.2 0.0 0.01 15.8 0.0 1.7 1 0 0 1 1 1 1 RsgA GTPase AAA PF00004.29 AHV92088.1 - 0.0039 17.6 0.0 0.15 12.5 0.0 2.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 AHV92088.1 - 0.0065 16.7 0.1 0.022 15.0 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 AHV92088.1 - 0.011 15.8 0.0 0.049 13.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain DUF87 PF01935.17 AHV92088.1 - 0.012 15.8 0.1 0.026 14.6 0.1 1.5 1 0 0 1 1 1 0 Helicase HerA, central domain APS_kinase PF01583.20 AHV92088.1 - 0.014 15.3 0.1 0.03 14.2 0.1 1.6 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_29 PF13555.6 AHV92088.1 - 0.024 14.4 0.2 0.11 12.3 0.2 2.1 2 0 0 2 2 1 0 P-loop containing region of AAA domain AAA_25 PF13481.6 AHV92088.1 - 0.03 13.9 0.0 0.063 12.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 AHV92088.1 - 0.031 14.4 0.0 0.079 13.0 0.0 1.8 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_24 PF13479.6 AHV92088.1 - 0.052 13.3 0.0 0.09 12.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.7 AHV92088.1 - 0.082 11.8 0.0 0.14 11.0 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain DUF815 PF05673.13 AHV92088.1 - 0.11 11.6 0.0 0.58 9.3 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF815) LysR_substrate PF03466.20 AHV92089.1 - 8e-44 149.5 4.6 1.2e-43 149.0 4.6 1.2 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 AHV92089.1 - 1.8e-24 85.4 1.2 4.9e-24 84.0 1.2 1.8 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_24 PF13412.6 AHV92089.1 - 0.17 11.4 0.6 3.2 7.4 0.0 2.8 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding DAP_epimerase PF01678.19 AHV92091.1 - 4e-55 185.2 2.5 4.8e-30 104.2 0.2 2.1 2 0 0 2 2 2 2 Diaminopimelate epimerase DUF4212 PF13937.6 AHV92092.1 - 5.6e-20 71.5 6.0 6.4e-20 71.3 6.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4212) YrbL-PhoP_reg PF10707.9 AHV92093.1 - 8.2e-71 237.7 0.0 9.4e-71 237.5 0.0 1.0 1 0 0 1 1 1 1 PhoP regulatory network protein YrbL Aldo_ket_red PF00248.21 AHV92094.1 - 3.1e-21 75.8 0.0 4.4e-10 39.2 0.0 2.0 1 1 1 2 2 2 2 Aldo/keto reductase family AAA_21 PF13304.6 AHV92096.1 - 0.062 13.1 0.1 0.073 12.9 0.1 1.1 1 0 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system CoA_binding PF02629.19 AHV92097.1 - 1.5e-22 80.1 2.0 3.6e-22 78.9 0.4 2.1 2 0 0 2 2 2 1 CoA binding domain Ligase_CoA PF00549.19 AHV92097.1 - 3.1e-15 56.3 0.5 5.1e-15 55.6 0.5 1.3 1 0 0 1 1 1 1 CoA-ligase Succ_CoA_lig PF13607.6 AHV92097.1 - 1.6e-08 34.4 0.0 2.3e-08 33.9 0.0 1.2 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain Acetyltransf_1 PF00583.25 AHV92098.1 - 2e-16 60.3 0.0 2.5e-16 59.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.7 AHV92098.1 - 2.1e-12 47.4 0.0 2.4e-12 47.3 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 AHV92098.1 - 1.5e-11 44.3 0.0 1.9e-11 44.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 AHV92098.1 - 2.8e-11 43.7 0.0 4.6e-11 43.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 AHV92098.1 - 2.1e-07 31.7 0.0 2.6e-07 31.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 AHV92098.1 - 2.3e-07 30.9 0.0 4.2e-07 30.1 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 AHV92098.1 - 4.2e-07 29.9 0.0 6.8e-07 29.2 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.6 AHV92098.1 - 0.019 14.6 0.0 0.035 13.8 0.0 1.6 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 AHV92098.1 - 0.047 13.8 0.0 0.084 13.0 0.0 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase CshA_NR2 PF18651.1 AHV92098.1 - 0.056 12.6 0.0 0.23 10.6 0.0 1.8 2 0 0 2 2 2 0 Surface adhesin CshA non-repetitive domain 2 Acetyltransf_13 PF13880.6 AHV92098.1 - 0.17 11.9 0.0 0.27 11.3 0.0 1.3 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase Acetyltransf_16 PF05301.11 AHV92098.1 - 0.21 11.4 0.0 0.3 10.8 0.0 1.2 1 0 0 1 1 1 0 GNAT acetyltransferase, Mec-17 Aconitase PF00330.20 AHV92099.1 - 3.1e-160 534.2 0.0 3.5e-160 534.0 0.0 1.0 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) Biotin_lipoyl_2 PF13533.6 AHV92100.1 - 9.6e-14 51.0 14.0 1.4e-11 44.1 4.3 3.5 3 0 0 3 3 3 2 Biotin-lipoyl like HlyD_D23 PF16576.5 AHV92100.1 - 6.1e-13 48.5 13.4 1.9e-12 46.9 12.8 2.1 2 1 0 2 2 2 1 Barrel-sandwich domain of CusB or HlyD membrane-fusion HlyD_3 PF13437.6 AHV92100.1 - 1.3e-11 45.2 6.4 5.3e-08 33.5 1.5 2.7 2 2 0 2 2 2 2 HlyD family secretion protein Biotin_lipoyl PF00364.22 AHV92100.1 - 1.3e-08 34.5 6.7 0.00063 19.5 0.1 3.4 3 0 0 3 3 3 2 Biotin-requiring enzyme Peptidase_M23 PF01551.22 AHV92100.1 - 1.7e-05 24.9 3.0 0.012 15.8 0.1 2.5 2 0 0 2 2 2 2 Peptidase family M23 OEP PF02321.18 AHV92100.1 - 6.5e-05 22.8 15.6 0.00011 22.1 15.6 1.3 1 0 0 1 1 1 1 Outer membrane efflux protein HlyD_2 PF12700.7 AHV92100.1 - 8.3e-05 21.5 0.1 0.00019 20.3 0.0 1.7 1 1 0 1 1 1 1 HlyD family secretion protein HIP1_clath_bdg PF16515.5 AHV92100.1 - 0.0018 18.9 11.3 0.0019 18.8 8.7 2.2 2 0 0 2 2 2 1 Clathrin-binding domain of Huntingtin-interacting protein 1 HrpB7 PF09486.10 AHV92100.1 - 0.012 16.0 12.1 0.02 15.3 12.1 1.3 1 0 0 1 1 1 0 Bacterial type III secretion protein (HrpB7) PTS_EIIA_1 PF00358.20 AHV92100.1 - 0.021 14.6 1.9 2 8.2 0.1 2.4 2 0 0 2 2 2 0 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 Spc7 PF08317.11 AHV92100.1 - 0.022 13.7 5.7 0.034 13.0 5.7 1.3 1 0 0 1 1 1 0 Spc7 kinetochore protein RnfC_N PF13375.6 AHV92100.1 - 0.051 13.5 5.1 0.092 12.7 0.4 3.0 2 1 1 3 3 3 0 RnfC Barrel sandwich hybrid domain TOBE PF03459.17 AHV92100.1 - 0.097 13.0 3.8 0.67 10.3 0.1 3.3 3 1 0 3 3 3 0 TOBE domain DUF4200 PF13863.6 AHV92100.1 - 0.16 12.4 10.9 0.26 11.7 7.5 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4200) DUF3138 PF11336.8 AHV92100.1 - 1.6 7.3 5.7 2.3 6.7 5.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3138) TPR_MLP1_2 PF07926.12 AHV92100.1 - 4 7.5 16.1 11 6.1 15.9 1.8 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein Sulfate_transp PF00916.20 AHV92101.1 - 2.3e-75 253.7 20.2 2.3e-75 253.7 20.2 1.3 1 1 0 1 1 1 1 Sulfate permease family STAS PF01740.21 AHV92101.1 - 2.3e-11 43.4 0.0 3.5e-11 42.8 0.0 1.3 1 0 0 1 1 1 1 STAS domain SBP_bac_3 PF00497.20 AHV92102.1 - 2.3e-50 171.1 0.1 1.6e-31 109.5 0.0 2.7 3 0 0 3 3 3 2 Bacterial extracellular solute-binding proteins, family 3 HATPase_c PF02518.26 AHV92102.1 - 6e-26 91.2 0.0 1.6e-25 89.8 0.0 1.7 2 0 0 2 2 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 AHV92102.1 - 2.9e-25 88.6 0.0 8.9e-25 87.0 0.0 1.9 1 0 0 1 1 1 1 Response regulator receiver domain HisKA PF00512.25 AHV92102.1 - 9.3e-19 67.2 1.6 2e-16 59.7 0.2 3.8 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.10 AHV92102.1 - 3.2e-12 46.7 0.1 1.1e-11 45.0 0.1 2.0 1 0 0 1 1 1 1 PAS fold PAS PF00989.25 AHV92102.1 - 2.8e-11 43.4 0.0 9.5e-11 41.7 0.0 2.0 2 0 0 2 2 2 1 PAS fold Hpt PF01627.23 AHV92102.1 - 1.4e-07 31.6 5.9 1.1e-06 28.8 5.9 2.7 1 0 0 1 1 1 1 Hpt domain Lig_chan-Glu_bd PF10613.9 AHV92102.1 - 2.4e-06 27.7 0.0 3.9e-05 23.8 0.0 2.7 2 1 0 2 2 2 1 Ligated ion channel L-glutamate- and glycine-binding site PAS_9 PF13426.7 AHV92102.1 - 0.00088 19.5 0.0 0.003 17.8 0.0 2.0 2 0 0 2 2 2 1 PAS domain HATPase_c_2 PF13581.6 AHV92102.1 - 0.0087 16.0 0.0 0.02 14.8 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 AHV92102.1 - 0.037 13.9 0.0 0.072 12.9 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.7 AHV92102.1 - 0.039 14.1 0.0 0.12 12.5 0.0 1.9 1 0 0 1 1 1 0 PAS fold PgaD PF13994.6 AHV92102.1 - 0.047 13.7 0.7 0.12 12.5 0.7 1.6 1 0 0 1 1 1 0 PgaD-like protein PAS_8 PF13188.7 AHV92102.1 - 0.052 13.6 0.0 0.23 11.5 0.0 2.2 1 0 0 1 1 1 0 PAS domain Luteo_P1-P2 PF08467.10 AHV92102.1 - 0.15 11.3 0.0 0.26 10.5 0.0 1.3 1 0 0 1 1 1 0 Luteovirus RNA polymerase P1-P2/replicase TctA PF01970.16 AHV92103.1 - 9.5e-84 281.5 21.8 1.1e-83 281.3 21.8 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family ABC_tran PF00005.27 AHV92104.1 - 9.7e-34 116.8 0.0 1.3e-33 116.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 AHV92104.1 - 1.3e-18 67.3 0.3 2.2e-18 66.5 0.3 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 AHV92104.1 - 3.7e-06 27.0 0.0 0.0012 18.7 0.0 2.4 1 1 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 AHV92104.1 - 6e-05 22.6 0.0 0.0002 20.9 0.0 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 AHV92104.1 - 0.00014 22.2 0.2 0.001 19.4 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 AHV92104.1 - 0.0015 18.9 0.3 0.0031 17.9 0.3 1.6 1 1 0 1 1 1 1 AAA ATPase domain TniB PF05621.11 AHV92104.1 - 0.0029 17.0 0.1 0.62 9.5 0.0 2.3 2 1 0 2 2 2 1 Bacterial TniB protein RsgA_GTPase PF03193.16 AHV92104.1 - 0.0057 16.6 0.1 0.011 15.7 0.1 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_29 PF13555.6 AHV92104.1 - 0.013 15.3 0.0 0.023 14.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.29 AHV92104.1 - 0.014 15.8 0.0 0.11 12.9 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.6 AHV92104.1 - 0.015 14.9 0.0 0.17 11.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain ATP-synt_ab PF00006.25 AHV92104.1 - 0.043 13.5 0.0 0.055 13.1 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Rad17 PF03215.15 AHV92104.1 - 0.072 13.0 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_5 PF07728.14 AHV92104.1 - 0.083 12.9 0.1 0.22 11.5 0.1 1.7 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) PRK PF00485.18 AHV92104.1 - 0.14 11.9 0.1 0.23 11.1 0.1 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family APS_kinase PF01583.20 AHV92104.1 - 0.16 11.8 0.1 0.7 9.8 0.0 1.9 2 0 0 2 2 2 0 Adenylylsulphate kinase NACHT PF05729.12 AHV92104.1 - 0.19 11.7 0.1 0.41 10.5 0.1 1.6 1 0 0 1 1 1 0 NACHT domain DUF802 PF05650.11 AHV92105.1 - 3.9e-58 193.7 174.2 1.4e-15 57.5 12.7 13.6 12 4 2 14 14 12 7 Domain of unknown function (DUF802) Apolipoprotein PF01442.18 AHV92105.1 - 6.5e-12 45.7 75.2 0.0003 20.7 11.7 5.5 1 1 4 5 5 5 4 Apolipoprotein A1/A4/E domain Spore_III_AB PF09548.10 AHV92105.1 - 0.0083 16.2 18.9 0.56 10.3 0.7 6.8 4 3 3 8 8 8 1 Stage III sporulation protein AB (spore_III_AB) ApoLp-III PF07464.11 AHV92105.1 - 0.012 15.8 19.8 0.062 13.4 3.2 5.2 3 2 2 6 6 6 0 Apolipophorin-III precursor (apoLp-III) RcsD_ABL PF16359.5 AHV92105.1 - 0.022 14.9 0.2 10 6.3 0.0 3.5 3 0 0 3 3 3 0 RcsD-ABL domain AmpE PF17113.5 AHV92105.1 - 0.16 11.3 5.7 0.09 12.1 0.8 3.0 2 1 1 3 3 3 0 Regulatory signalling modulator protein AmpE Muted PF14942.6 AHV92105.1 - 0.26 11.6 12.4 3.6 7.9 0.5 4.8 4 1 1 6 6 6 0 Organelle biogenesis, Muted-like protein DHC_N1 PF08385.12 AHV92105.1 - 0.29 9.7 4.3 0.82 8.2 1.4 2.7 2 2 1 3 3 3 0 Dynein heavy chain, N-terminal region 1 Prominin PF05478.11 AHV92105.1 - 0.37 8.7 11.3 0.038 12.0 0.8 3.6 3 2 1 4 4 4 0 Prominin Baculo_PEP_C PF04513.12 AHV92105.1 - 0.95 9.5 40.0 4 7.5 0.0 8.5 1 1 7 9 9 9 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF445 PF04286.12 AHV92105.1 - 1 9.1 16.9 32 4.2 9.2 3.9 1 1 0 2 2 2 0 Protein of unknown function (DUF445) DUF3562 PF12085.8 AHV92105.1 - 7.1 6.3 13.0 0.19 11.4 0.4 4.4 5 0 0 5 5 5 0 Protein of unknown function (DUF3562) EamA PF00892.20 AHV92106.1 - 7.5e-06 26.2 28.9 0.0037 17.4 5.1 2.1 2 0 0 2 2 2 2 EamA-like transporter family DUF1254 PF06863.12 AHV92107.1 - 1.1e-29 103.2 0.1 1.7e-29 102.6 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1254) UvrD-helicase PF00580.21 AHV92108.1 - 8.3e-69 232.5 0.0 3.5e-66 223.9 0.0 2.4 1 1 0 1 1 1 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.6 AHV92108.1 - 5.7e-60 203.5 0.0 1.7e-59 202.0 0.0 1.7 1 1 0 1 1 1 1 UvrD-like helicase C-terminal domain AAA_19 PF13245.6 AHV92108.1 - 1.3e-33 116.4 0.1 4.8e-33 114.5 0.1 2.0 1 1 0 1 1 1 1 AAA domain UvrD_C_2 PF13538.6 AHV92108.1 - 4.3e-09 36.1 0.0 0.0011 18.7 0.0 2.8 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain AAA_30 PF13604.6 AHV92108.1 - 2.9e-08 33.7 0.5 0.0001 22.1 0.1 2.4 2 0 0 2 2 2 2 AAA domain Viral_helicase1 PF01443.18 AHV92108.1 - 4.9e-05 23.2 0.7 3.5 7.3 0.1 4.0 3 1 0 3 3 3 3 Viral (Superfamily 1) RNA helicase DUF2267 PF10025.9 AHV92108.1 - 0.15 12.4 3.5 5.9 7.2 0.4 2.7 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2267) CoA_transf_3 PF02515.17 AHV92110.1 - 1.6e-79 267.8 0.0 1.8e-79 267.6 0.0 1.0 1 0 0 1 1 1 1 CoA-transferase family III rve_3 PF13683.6 AHV92111.1 - 4e-26 90.6 0.1 4.7e-26 90.3 0.1 1.1 1 0 0 1 1 1 1 Integrase core domain rve_2 PF13333.6 AHV92111.1 - 5.8e-08 32.8 0.0 7.4e-08 32.5 0.0 1.1 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AHV92111.1 - 0.003 17.8 0.0 0.0035 17.6 0.0 1.1 1 0 0 1 1 1 1 DDE domain Complex1_30kDa PF00329.19 AHV92112.1 - 7.2e-43 146.1 0.0 9.2e-43 145.8 0.0 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AzlD PF05437.12 AHV92114.1 - 1.2e-20 73.5 10.8 1.5e-20 73.2 10.8 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport protein (AzlD) Phage_holin_3_6 PF07332.11 AHV92114.1 - 6.2 6.9 11.0 17 5.5 11.0 1.8 1 1 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III SBP_bac_11 PF13531.6 AHV92115.1 - 7.6e-47 160.0 1.2 9.8e-47 159.6 1.2 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 AHV92115.1 - 9.8e-18 65.1 2.5 1.3e-17 64.8 2.5 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 AHV92115.1 - 1.9e-10 40.6 0.3 1.1e-08 34.9 0.1 2.1 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 AHV92115.1 - 5e-08 33.1 0.4 2.4e-07 30.8 0.4 1.8 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.7 AHV92115.1 - 0.0031 16.7 0.0 0.0049 16.0 0.0 1.5 1 0 0 1 1 1 1 PBP superfamily domain Peripla_BP_6 PF13458.6 AHV92116.1 - 1.7e-81 274.5 8.2 2e-81 274.3 8.2 1.0 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 AHV92116.1 - 8.3e-18 64.5 0.4 1.1e-16 60.9 0.4 1.9 1 1 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.28 AHV92116.1 - 1.5e-08 34.2 0.0 1.8e-08 33.9 0.0 1.2 1 0 0 1 1 1 1 Receptor family ligand binding region DUF1905 PF08922.11 AHV92116.1 - 0.06 13.4 0.0 17 5.6 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1905) DUF72 PF01904.18 AHV92117.1 - 5.1e-20 72.5 0.0 5.6e-20 72.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 G-patch_2 PF12656.7 AHV92117.1 - 0.044 13.9 0.0 0.069 13.3 0.0 1.3 1 0 0 1 1 1 0 G-patch domain tRNA-synt_1 PF00133.22 AHV92118.1 - 4.6e-198 659.3 0.0 5.5e-197 655.7 0.0 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 AHV92118.1 - 1.8e-38 131.9 0.0 3.7e-38 130.9 0.0 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA Val_tRNA-synt_C PF10458.9 AHV92118.1 - 5.2e-23 81.1 3.8 1.1e-22 80.1 1.5 2.5 2 0 0 2 2 2 1 Valyl tRNA synthetase tRNA binding arm tRNA-synt_1g PF09334.11 AHV92118.1 - 4.6e-17 61.8 1.2 5.8e-07 28.6 0.1 3.9 4 1 0 4 4 4 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.6 AHV92118.1 - 0.00039 20.0 0.0 0.001 18.6 0.0 1.6 1 1 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 ABC_tran_CTD PF16326.5 AHV92118.1 - 0.057 13.7 0.1 0.057 13.7 0.1 2.6 3 0 0 3 3 3 0 ABC transporter C-terminal domain tRNA-synt_1e PF01406.19 AHV92118.1 - 0.072 12.4 0.1 6 6.1 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetases class I (C) catalytic domain DegT_DnrJ_EryC1 PF01041.17 AHV92119.1 - 4.5e-12 46.0 0.0 4.7e-12 45.9 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Hydrolase PF00702.26 AHV92120.1 - 1.8e-30 106.8 3.7 3.2e-30 106.0 3.7 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase E1-E2_ATPase PF00122.20 AHV92120.1 - 5.9e-28 97.6 2.1 5.9e-28 97.6 2.1 2.1 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase_3 PF08282.12 AHV92120.1 - 0.00016 21.5 0.5 0.00032 20.5 0.5 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 AHV92120.1 - 0.00065 20.1 0.4 0.0086 16.5 0.4 2.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Herpes_Helicase PF02689.14 AHV92120.1 - 0.036 12.0 0.0 0.053 11.5 0.0 1.2 1 0 0 1 1 1 0 Helicase Cadherin_4 PF17803.1 AHV92120.1 - 0.79 10.4 4.8 1.2 9.8 0.7 2.9 3 0 0 3 3 3 0 Bacterial cadherin-like domain Peripla_BP_6 PF13458.6 AHV92121.1 - 3.5e-54 184.8 6.5 4.5e-54 184.4 6.5 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 AHV92121.1 - 3.4e-17 62.5 0.0 4.3e-17 62.1 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.28 AHV92121.1 - 4.6e-07 29.3 0.0 1.1e-05 24.8 0.0 2.0 2 0 0 2 2 2 1 Receptor family ligand binding region NMT1 PF09084.11 AHV92122.1 - 1.4e-15 57.8 0.0 1.9e-15 57.4 0.0 1.1 1 0 0 1 1 1 1 NMT1/THI5 like NMT1_2 PF13379.6 AHV92122.1 - 1.8e-12 47.5 0.4 2.4e-12 47.1 0.4 1.2 1 0 0 1 1 1 1 NMT1-like family Phosphonate-bd PF12974.7 AHV92122.1 - 5.3e-09 36.0 0.1 7.5e-09 35.5 0.1 1.2 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein SBP_bac_3 PF00497.20 AHV92122.1 - 1.4e-05 24.7 0.0 3.6e-05 23.3 0.0 1.7 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 NMT1_3 PF16868.5 AHV92122.1 - 0.0024 17.3 0.0 0.028 13.8 0.0 2.1 1 1 1 2 2 2 1 NMT1-like family SBP_bac_11 PF13531.6 AHV92122.1 - 0.018 14.8 1.2 0.03 14.1 1.2 1.4 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein Tai4 PF16695.5 AHV92122.1 - 0.16 12.5 0.0 0.29 11.7 0.0 1.4 1 0 0 1 1 1 0 Type VI secretion system (T6SS), amidase immunity protein rve PF00665.26 AHV92123.1 - 8.3e-14 51.8 0.0 3.1e-12 46.7 0.0 2.1 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 AHV92123.1 - 4.2e-12 46.0 8.6 8.5e-12 45.0 8.6 1.5 1 0 0 1 1 1 1 HTH-like domain Rhomboid_SP PF12595.8 AHV92123.1 - 0.021 14.2 0.2 1.1 8.5 0.0 2.2 1 1 0 2 2 2 0 Rhomboid serine protease Aminotran_1_2 PF00155.21 AHV92124.1 - 2.1e-55 188.4 0.0 2.4e-55 188.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 AHV92124.1 - 8.9e-08 31.5 0.0 1.3e-07 30.9 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 AHV92124.1 - 1.7e-07 30.9 0.1 2.6e-07 30.3 0.1 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 AHV92124.1 - 6.3e-06 25.0 0.0 1e-05 24.3 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Asn_synthase PF00733.21 AHV92126.1 - 2.8e-58 198.3 0.5 3.9e-58 197.8 0.5 1.2 1 0 0 1 1 1 1 Asparagine synthase GATase_7 PF13537.6 AHV92126.1 - 8.4e-42 142.0 0.0 2.3e-41 140.5 0.0 1.8 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_6 PF13522.6 AHV92126.1 - 5.8e-39 133.4 0.0 1.7e-38 131.9 0.0 1.8 1 0 0 1 1 1 1 Glutamine amidotransferase domain ATP_bind_3 PF01171.20 AHV92126.1 - 0.029 14.1 0.0 0.089 12.5 0.0 1.8 2 0 0 2 2 2 0 PP-loop family DUF1933 PF09147.10 AHV92126.1 - 0.03 14.0 0.0 0.046 13.3 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1933) DUF3700 PF12481.8 AHV92126.1 - 0.034 13.6 0.0 0.051 13.0 0.0 1.2 1 0 0 1 1 1 0 Aluminium induced protein QueC PF06508.13 AHV92126.1 - 0.19 11.2 0.0 0.31 10.5 0.0 1.2 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC DUF308 PF03729.13 AHV92127.1 - 9.8e-31 105.9 51.6 9.5e-16 57.9 14.5 3.0 1 1 2 3 3 3 3 Short repeat of unknown function (DUF308) Phage_holin_5_1 PF06946.11 AHV92127.1 - 0.63 10.5 10.9 0.19 12.1 4.3 2.3 2 0 0 2 2 2 0 Bacteriophage A118-like holin, Hol118 DUF4064 PF13273.6 AHV92127.1 - 3.5 7.9 24.3 4.7 7.5 4.4 4.0 3 1 0 3 3 3 0 Protein of unknown function (DUF4064) Phos_pyr_kin PF08543.12 AHV92128.1 - 3.4e-88 295.2 0.0 3.8e-88 295.0 0.0 1.0 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase PfkB PF00294.24 AHV92128.1 - 0.0004 19.8 0.0 0.00061 19.2 0.0 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase HK PF02110.15 AHV92128.1 - 0.083 12.3 0.9 0.19 11.1 0.0 2.3 2 1 0 2 2 2 0 Hydroxyethylthiazole kinase family D-ser_dehydrat PF14031.6 AHV92129.1 - 2.2e-15 57.0 0.0 2.6e-15 56.9 0.0 1.1 1 0 0 1 1 1 1 Putative serine dehydratase domain Acetyltransf_1 PF00583.25 AHV92130.1 - 9e-14 51.7 0.0 1.1e-13 51.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 AHV92130.1 - 4.8e-08 33.3 0.0 6.9e-08 32.8 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 AHV92130.1 - 1.3e-07 31.6 0.0 1.7e-07 31.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 AHV92130.1 - 0.00015 21.6 0.0 0.00032 20.6 0.0 1.5 2 0 0 2 2 2 1 FR47-like protein Acetyltransf_4 PF13420.7 AHV92130.1 - 0.0065 16.6 0.0 0.0083 16.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 AHV92130.1 - 0.01 15.5 0.0 0.031 13.9 0.0 1.8 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 AHV92130.1 - 0.016 15.3 0.0 0.035 14.2 0.0 1.6 1 1 0 1 1 1 0 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.7 AHV92130.1 - 0.024 15.3 0.0 0.026 15.2 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain TctC PF03401.14 AHV92131.1 - 1e-36 126.4 0.0 1.1e-36 126.3 0.0 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor Orn_Arg_deC_N PF02784.16 AHV92132.1 - 1.7e-70 237.2 0.0 2.4e-70 236.7 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.22 AHV92132.1 - 1.9e-26 92.2 0.0 2.3e-26 91.9 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Ala_racemase_N PF01168.20 AHV92132.1 - 3.3e-06 26.9 0.1 1.4e-05 24.8 0.0 2.0 2 1 0 2 2 2 1 Alanine racemase, N-terminal domain Peptidase_S13 PF02113.15 AHV92133.1 - 0.021 13.6 0.0 0.026 13.3 0.0 1.0 1 0 0 1 1 1 0 D-Ala-D-Ala carboxypeptidase 3 (S13) family Succ_CoA_lig PF13607.6 AHV92133.1 - 0.051 13.4 0.3 0.08 12.7 0.3 1.5 1 1 0 1 1 1 0 Succinyl-CoA ligase like flavodoxin domain SmpB PF01668.18 AHV92134.1 - 1.6e-57 193.4 0.5 1.8e-57 193.2 0.5 1.0 1 0 0 1 1 1 1 SmpB protein YXWGXW PF12779.7 AHV92135.1 - 2.9e-06 27.3 30.9 2.8e-05 24.2 15.7 4.3 4 0 0 4 4 4 3 YXWGXW repeat (2 copies) Copper-bind PF00127.20 AHV92137.1 - 3.8e-14 52.9 0.0 7.7e-14 51.9 0.0 1.5 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family tRNA-synt_2c PF01411.19 AHV92138.1 - 1.7e-95 320.7 0.0 1.9e-95 320.4 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (A) HTH_Crp_2 PF13545.6 AHV92139.1 - 1.3e-10 41.1 0.1 3.2e-10 39.9 0.1 1.6 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain cNMP_binding PF00027.29 AHV92139.1 - 5.3e-09 36.0 0.0 1.1e-08 35.0 0.0 1.6 2 0 0 2 2 2 1 Cyclic nucleotide-binding domain MarR_2 PF12802.7 AHV92139.1 - 0.021 14.7 0.0 0.039 13.8 0.0 1.5 1 0 0 1 1 1 0 MarR family TrmB PF01978.19 AHV92139.1 - 0.026 14.4 0.1 0.057 13.3 0.1 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Phage_capsid PF05065.13 AHV92139.1 - 0.029 13.7 0.0 0.037 13.3 0.0 1.1 1 0 0 1 1 1 0 Phage capsid family HTH_20 PF12840.7 AHV92139.1 - 0.069 13.2 0.0 0.14 12.3 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain DDE_Tnp_ISL3 PF01610.17 AHV92140.1 - 7.9e-65 218.9 1.2 1.1e-64 218.4 0.3 1.6 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV92140.1 - 1.4e-11 43.6 0.1 3.6e-11 42.3 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV92140.1 - 5.3e-09 36.6 11.2 1.1e-08 35.6 11.2 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV92140.1 - 0.0056 16.7 0.2 0.016 15.3 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain SLT_L PF14718.6 AHV92140.1 - 0.016 15.3 1.5 0.016 15.3 1.5 1.8 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain NOB1_Zn_bind PF08772.11 AHV92140.1 - 0.017 15.2 0.2 1.2 9.3 0.0 2.5 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-IS66 PF13005.7 AHV92140.1 - 8.2 6.9 9.6 3.6 8.1 6.6 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 rve PF00665.26 AHV92141.1 - 2.9e-32 111.3 0.7 4.3e-32 110.8 0.1 1.6 2 0 0 2 2 1 1 Integrase core domain LZ_Tnp_IS481 PF13011.6 AHV92141.1 - 7.7e-22 77.6 2.7 1.1e-19 70.7 0.4 2.6 1 1 1 2 2 2 1 leucine-zipper of insertion element IS481 rve_3 PF13683.6 AHV92141.1 - 5e-19 67.8 2.7 1.2e-18 66.6 2.7 1.7 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.6 AHV92141.1 - 6.1e-17 60.9 4.4 1.2e-07 31.3 0.1 2.7 2 0 0 2 2 2 2 Homeodomain-like domain HTH_28 PF13518.6 AHV92141.1 - 1.5e-15 57.1 6.5 5.9e-11 42.3 0.1 3.4 4 0 0 4 4 3 2 Helix-turn-helix domain HTH_29 PF13551.6 AHV92141.1 - 9.8e-12 44.7 0.6 2.6e-06 27.4 0.0 2.6 2 0 0 2 2 2 2 Winged helix-turn helix HTH_32 PF13565.6 AHV92141.1 - 9.4e-11 42.2 0.7 9.4e-11 42.2 0.7 2.4 2 1 0 2 2 2 1 Homeodomain-like domain HTH_38 PF13936.6 AHV92141.1 - 1.5e-06 27.9 0.6 5.1e-06 26.1 0.5 2.1 2 0 0 2 2 1 1 Helix-turn-helix domain MarR_2 PF12802.7 AHV92141.1 - 8e-06 25.6 3.1 9.5e-05 22.2 1.2 2.6 2 0 0 2 2 2 1 MarR family HTH_31 PF13560.6 AHV92141.1 - 1.4e-05 25.4 1.7 0.00059 20.1 0.4 3.2 3 0 0 3 3 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 AHV92141.1 - 3e-05 23.6 0.1 0.0064 16.1 0.3 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 AHV92141.1 - 4.6e-05 22.9 0.1 0.00056 19.4 0.2 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 YdaS_antitoxin PF15943.5 AHV92141.1 - 0.00022 21.0 0.2 0.24 11.3 0.0 2.8 2 0 0 2 2 2 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_Tnp_ISL3 PF13542.6 AHV92141.1 - 0.00023 20.5 8.5 0.002 17.5 0.6 3.9 4 0 0 4 4 3 1 Helix-turn-helix domain of transposase family ISL3 HTH_24 PF13412.6 AHV92141.1 - 0.00028 20.4 0.2 0.0021 17.6 0.3 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_3 PF01381.22 AHV92141.1 - 0.00032 20.7 0.7 0.013 15.5 0.3 2.5 2 0 0 2 2 2 1 Helix-turn-helix HTH_Crp_2 PF13545.6 AHV92141.1 - 0.0004 20.3 0.3 0.0027 17.6 0.2 2.3 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain Trp_repressor PF01371.19 AHV92141.1 - 0.00081 19.5 0.2 0.006 16.7 0.1 2.2 2 0 0 2 2 2 1 Trp repressor protein CENP-B_N PF04218.13 AHV92141.1 - 0.0016 18.0 0.0 1.6 8.5 0.1 2.3 2 0 0 2 2 2 1 CENP-B N-terminal DNA-binding domain LacI PF00356.21 AHV92141.1 - 0.0017 18.1 1.8 0.0046 16.7 0.7 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family Fe_dep_repress PF01325.19 AHV92141.1 - 0.002 18.3 0.0 0.034 14.4 0.1 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.20 AHV92141.1 - 0.0023 17.8 0.0 0.93 9.4 0.0 2.5 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 AHV92141.1 - 0.0025 17.6 1.3 0.035 13.9 0.7 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_psq PF05225.16 AHV92141.1 - 0.0025 17.5 0.7 2.3 8.0 0.4 2.9 3 0 0 3 3 3 1 helix-turn-helix, Psq domain HTH_11 PF08279.12 AHV92141.1 - 0.0026 17.7 0.4 0.015 15.3 0.5 2.2 2 0 0 2 2 2 1 HTH domain SpoIIID PF12116.8 AHV92141.1 - 0.0026 17.8 0.0 1.1 9.4 0.0 2.4 2 0 0 2 2 2 1 Stage III sporulation protein D HTH_AsnC-type PF13404.6 AHV92141.1 - 0.0036 17.1 2.7 0.045 13.6 1.1 2.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain RepB PF07506.11 AHV92141.1 - 0.0042 17.2 0.1 0.55 10.3 0.1 2.3 1 1 1 2 2 2 1 RepB plasmid partitioning protein HTH_17 PF12728.7 AHV92141.1 - 0.0043 17.2 0.7 6.1 7.1 0.0 3.3 3 1 0 3 3 3 0 Helix-turn-helix domain HTH_Tnp_1 PF01527.20 AHV92141.1 - 0.005 17.1 0.5 0.11 12.8 0.0 2.7 1 1 1 2 2 2 1 Transposase GntR PF00392.21 AHV92141.1 - 0.0053 16.4 0.8 0.5 10.1 0.3 2.5 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_10 PF04967.12 AHV92141.1 - 0.0077 16.0 0.1 0.049 13.4 0.2 2.2 2 0 0 2 2 2 1 HTH DNA binding domain HTH_35 PF13693.6 AHV92141.1 - 0.0093 16.0 1.5 0.073 13.1 0.6 2.7 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding UPF0175 PF03683.13 AHV92141.1 - 0.014 15.1 0.4 0.1 12.3 0.1 2.4 2 1 0 2 2 2 0 Uncharacterised protein family (UPF0175) HTH_30 PF13556.6 AHV92141.1 - 0.015 15.1 0.1 2 8.3 0.0 2.6 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain HTH_37 PF13744.6 AHV92141.1 - 0.016 15.2 0.1 0.13 12.3 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Tnp_4 PF13613.6 AHV92141.1 - 0.016 14.9 0.1 0.067 12.9 0.0 2.0 2 0 0 2 2 1 0 Helix-turn-helix of DDE superfamily endonuclease HTH_36 PF13730.6 AHV92141.1 - 0.02 14.8 0.1 0.58 10.2 0.0 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain KORA PF16509.5 AHV92141.1 - 0.034 14.4 0.1 3.6 8.0 0.0 3.0 3 0 0 3 3 3 0 TrfB plasmid transcriptional repressor MarR PF01047.22 AHV92141.1 - 0.045 13.7 0.1 0.14 12.1 0.1 1.8 2 0 0 2 2 1 0 MarR family DDE_Tnp_IS240 PF13610.6 AHV92141.1 - 0.048 13.9 0.1 0.071 13.3 0.1 1.3 1 0 0 1 1 1 0 DDE domain Crp PF00325.20 AHV92141.1 - 0.05 13.3 3.2 0.062 13.0 0.5 2.5 3 0 0 3 3 3 0 Bacterial regulatory proteins, crp family P22_Cro PF14549.6 AHV92141.1 - 0.051 13.4 1.6 9.6 6.1 0.1 2.5 2 0 0 2 2 2 0 DNA-binding transcriptional regulator Cro DUF746 PF05344.11 AHV92141.1 - 0.085 12.7 0.1 0.98 9.3 0.0 2.3 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) HTH_1 PF00126.27 AHV92141.1 - 0.1 12.5 2.8 4.7 7.2 0.5 2.6 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_26 PF13443.6 AHV92141.1 - 0.17 12.3 0.0 3.6 8.1 0.1 2.8 3 0 0 3 3 3 0 Cro/C1-type HTH DNA-binding domain HTH_8 PF02954.19 AHV92141.1 - 0.19 11.5 0.9 14 5.5 0.7 2.7 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family HTH_Tnp_Tc3_2 PF01498.18 AHV92141.1 - 0.27 11.5 2.6 0.47 10.7 0.1 2.6 3 0 0 3 3 1 0 Transposase HTH_33 PF13592.6 AHV92141.1 - 0.56 9.9 3.1 2.9 7.6 0.1 3.4 4 0 0 4 4 2 0 Winged helix-turn helix MerR PF00376.23 AHV92141.1 - 0.72 9.7 6.8 3.2 7.6 0.0 3.6 4 0 0 4 4 2 0 MerR family regulatory protein EamA PF00892.20 AHV92142.1 - 4.1e-12 46.5 12.7 4.4e-12 46.3 12.7 1.0 1 0 0 1 1 1 1 EamA-like transporter family UAA PF08449.11 AHV92142.1 - 0.16 11.1 5.2 0.19 10.9 5.2 1.0 1 0 0 1 1 1 0 UAA transporter family ADH_N PF08240.12 AHV92143.1 - 4.1e-28 97.4 1.6 4.1e-28 97.4 1.6 1.8 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 AHV92143.1 - 2.4e-20 72.9 0.1 4.9e-20 71.8 0.1 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 AHV92143.1 - 9.8e-06 26.7 0.0 5e-05 24.4 0.0 2.0 1 1 0 1 1 1 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 AHV92143.1 - 5e-05 22.9 0.2 7.1e-05 22.4 0.2 1.3 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus AlaDh_PNT_C PF01262.21 AHV92143.1 - 0.00038 19.8 1.5 0.0006 19.2 1.5 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain 2-Hacid_dh_C PF02826.19 AHV92143.1 - 0.016 14.6 0.2 0.028 13.8 0.2 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 AHV92143.1 - 0.037 14.2 0.1 0.064 13.4 0.1 1.4 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase DUF1967 PF09269.11 AHV92143.1 - 0.089 12.7 0.0 0.2 11.6 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1967) ThiF PF00899.21 AHV92143.1 - 0.16 11.3 1.6 0.3 10.4 1.6 1.4 1 0 0 1 1 1 0 ThiF family DHOR PF06537.11 AHV92144.1 - 4.7e-136 454.3 0.0 5.7e-136 454.0 0.0 1.0 1 0 0 1 1 1 1 Di-haem oxidoreductase, putative peroxidase Cytochrom_C PF00034.21 AHV92144.1 - 1.9e-10 41.7 0.0 7.3e-07 30.3 0.0 2.9 2 1 0 2 2 2 2 Cytochrome c Cytochrome_CBB3 PF13442.6 AHV92144.1 - 8.6e-05 22.8 0.0 1.1 9.7 0.0 3.5 3 0 0 3 3 3 2 Cytochrome C oxidase, cbb3-type, subunit III SCP2 PF02036.17 AHV92145.1 - 6.9e-08 32.9 0.0 1.3e-07 32.0 0.0 1.5 1 0 0 1 1 1 1 SCP-2 sterol transfer family TonB_dep_Rec PF00593.24 AHV92147.1 - 9.1e-60 203.8 32.8 9.1e-60 203.8 32.8 2.0 1 1 1 2 2 2 1 TonB dependent receptor Plug PF07715.15 AHV92147.1 - 6.7e-11 42.7 2.1 7.1e-11 42.6 0.4 2.0 2 0 0 2 2 2 1 TonB-dependent Receptor Plug Domain OMP_b-brl_3 PF14905.6 AHV92147.1 - 2.3e-06 26.8 0.4 1.5e-05 24.2 0.1 2.2 2 0 0 2 2 2 1 Outer membrane protein beta-barrel family Peptidase_S8 PF00082.22 AHV92148.1 - 5e-36 124.5 0.4 7.9e-36 123.8 0.4 1.3 1 0 0 1 1 1 1 Subtilase family Autotransporter PF03797.19 AHV92148.1 - 1.3e-28 100.4 8.0 1.3e-28 100.4 8.0 3.1 3 0 0 3 3 3 1 Autotransporter beta-domain PATR PF12951.7 AHV92148.1 - 1.5e-08 34.6 4.7 3.7e-08 33.3 0.8 3.0 2 0 0 2 2 2 1 Passenger-associated-transport-repeat Citrate_synt PF00285.21 AHV92149.1 - 7e-114 380.6 0.0 8.3e-114 380.4 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase, C-terminal domain ADH_N_2 PF16884.5 AHV92150.1 - 3.3e-41 139.5 0.0 6.3e-41 138.7 0.0 1.5 1 0 0 1 1 1 1 N-terminal domain of oxidoreductase ADH_zinc_N PF00107.26 AHV92150.1 - 1.4e-15 57.4 0.0 2.8e-15 56.4 0.0 1.5 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 AHV92150.1 - 5.3e-05 24.3 0.0 9.6e-05 23.4 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ATP-grasp_2 PF08442.10 AHV92151.1 - 6.3e-81 270.8 0.8 8.1e-81 270.4 0.2 1.5 2 0 0 2 2 2 1 ATP-grasp domain Ligase_CoA PF00549.19 AHV92151.1 - 4.7e-25 88.2 1.8 8.4e-25 87.4 1.8 1.4 1 0 0 1 1 1 1 CoA-ligase ATP-grasp_5 PF13549.6 AHV92151.1 - 2.6e-09 36.9 0.2 9.2e-09 35.1 0.2 2.0 1 1 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 AHV92151.1 - 2.4e-06 27.2 0.1 9.8e-06 25.2 0.1 2.0 1 1 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain GARS_A PF01071.19 AHV92151.1 - 0.0062 16.3 0.0 0.013 15.3 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp PF02222.22 AHV92151.1 - 0.015 14.9 0.0 0.027 14.0 0.0 1.4 1 0 0 1 1 1 0 ATP-grasp domain Exonuc_VII_S PF02609.16 AHV92153.1 - 2e-21 75.8 0.6 2.4e-21 75.5 0.6 1.1 1 0 0 1 1 1 1 Exonuclease VII small subunit Virul_fac_BrkB PF03631.15 AHV92155.1 - 3.2e-09 36.8 2.0 3.6e-09 36.6 2.0 1.1 1 0 0 1 1 1 1 Virulence factor BrkB LysR_substrate PF03466.20 AHV92156.1 - 1.1e-12 47.7 2.3 1.3e-12 47.5 2.3 1.1 1 0 0 1 1 1 1 LysR substrate binding domain DUF1350 PF07082.11 AHV92156.1 - 0.0021 17.4 0.0 0.0022 17.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1350) AMP-binding PF00501.28 AHV92157.1 - 1e-19 70.5 0.1 2e-19 69.5 0.0 1.5 2 0 0 2 2 2 1 AMP-binding enzyme AMP-binding_C PF13193.6 AHV92157.1 - 1.4e-08 35.6 0.0 2.6e-08 34.7 0.0 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain DUF4258 PF14076.6 AHV92157.1 - 0.11 12.9 0.0 0.19 12.2 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4258) Peptidase_M23 PF01551.22 AHV92158.1 - 9.7e-27 93.0 0.1 1.6e-26 92.3 0.1 1.4 1 0 0 1 1 1 1 Peptidase family M23 DUF1664 PF07889.12 AHV92158.1 - 0.0023 17.9 7.4 0.0057 16.7 0.6 2.9 2 1 1 3 3 3 1 Protein of unknown function (DUF1664) NPV_P10 PF05531.12 AHV92158.1 - 6.6 7.3 5.5 15 6.1 0.7 2.9 2 2 0 2 2 2 0 Nucleopolyhedrovirus P10 protein AMP-binding PF00501.28 AHV92159.1 - 1e-71 241.8 0.0 1.3e-71 241.5 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 AHV92159.1 - 1.8e-24 86.5 0.7 4.4e-24 85.2 0.7 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain DUF2205 PF10224.9 AHV92159.1 - 0.084 12.9 0.0 0.17 11.9 0.0 1.4 1 0 0 1 1 1 0 Short coiled-coil protein rve PF00665.26 AHV92161.1 - 2.7e-32 111.4 0.7 4.3e-32 110.8 0.1 1.6 2 0 0 2 2 1 1 Integrase core domain LZ_Tnp_IS481 PF13011.6 AHV92161.1 - 7.8e-22 77.6 2.7 1.1e-19 70.7 0.4 2.6 1 1 1 2 2 2 1 leucine-zipper of insertion element IS481 rve_3 PF13683.6 AHV92161.1 - 1.9e-18 66.0 3.1 4.4e-18 64.8 3.1 1.7 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.6 AHV92161.1 - 6.1e-17 60.9 4.4 1.2e-07 31.3 0.1 2.7 2 0 0 2 2 2 2 Homeodomain-like domain HTH_28 PF13518.6 AHV92161.1 - 1.4e-15 57.1 6.5 5.9e-11 42.3 0.1 3.4 4 0 0 4 4 3 2 Helix-turn-helix domain HTH_29 PF13551.6 AHV92161.1 - 9.6e-12 44.8 0.6 2.6e-06 27.4 0.0 2.6 2 0 0 2 2 2 2 Winged helix-turn helix HTH_32 PF13565.6 AHV92161.1 - 7.8e-11 42.4 3.4 9.4e-11 42.2 0.7 2.4 2 0 0 2 2 2 1 Homeodomain-like domain HTH_38 PF13936.6 AHV92161.1 - 1.5e-06 27.9 0.6 5.1e-06 26.1 0.5 2.1 2 0 0 2 2 1 1 Helix-turn-helix domain MarR_2 PF12802.7 AHV92161.1 - 8.1e-06 25.6 3.1 9.5e-05 22.2 1.2 2.6 2 0 0 2 2 2 1 MarR family HTH_31 PF13560.6 AHV92161.1 - 1.4e-05 25.3 1.7 0.00059 20.1 0.4 3.2 3 0 0 3 3 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 AHV92161.1 - 3e-05 23.6 0.1 0.0064 16.1 0.3 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 AHV92161.1 - 4.9e-05 22.8 0.1 0.00056 19.4 0.2 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 YdaS_antitoxin PF15943.5 AHV92161.1 - 0.00023 21.0 0.2 0.24 11.3 0.0 2.8 2 0 0 2 2 2 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_24 PF13412.6 AHV92161.1 - 0.00028 20.4 0.2 0.0021 17.6 0.3 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_Tnp_ISL3 PF13542.6 AHV92161.1 - 0.00029 20.2 8.7 0.002 17.5 0.6 3.9 4 0 0 4 4 3 1 Helix-turn-helix domain of transposase family ISL3 HTH_3 PF01381.22 AHV92161.1 - 0.00032 20.7 0.7 0.013 15.5 0.3 2.5 2 0 0 2 2 2 1 Helix-turn-helix HTH_Crp_2 PF13545.6 AHV92161.1 - 0.00041 20.3 0.3 0.0027 17.6 0.2 2.3 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain Trp_repressor PF01371.19 AHV92161.1 - 0.00081 19.5 0.2 0.006 16.7 0.1 2.2 2 0 0 2 2 2 1 Trp repressor protein CENP-B_N PF04218.13 AHV92161.1 - 0.0016 18.0 0.0 1.6 8.5 0.1 2.3 2 0 0 2 2 2 1 CENP-B N-terminal DNA-binding domain LacI PF00356.21 AHV92161.1 - 0.0017 18.1 1.8 0.0046 16.7 0.7 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family Fe_dep_repress PF01325.19 AHV92161.1 - 0.002 18.3 0.0 0.034 14.4 0.1 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.20 AHV92161.1 - 0.0023 17.8 0.0 0.93 9.4 0.0 2.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 AHV92161.1 - 0.0025 17.6 1.3 0.035 13.9 0.7 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_psq PF05225.16 AHV92161.1 - 0.0025 17.5 0.7 2.3 8.0 0.4 2.9 3 0 0 3 3 3 1 helix-turn-helix, Psq domain HTH_11 PF08279.12 AHV92161.1 - 0.0026 17.7 0.4 0.015 15.3 0.5 2.2 2 0 0 2 2 2 1 HTH domain SpoIIID PF12116.8 AHV92161.1 - 0.0026 17.8 0.0 1.1 9.4 0.0 2.4 2 0 0 2 2 2 1 Stage III sporulation protein D HTH_17 PF12728.7 AHV92161.1 - 0.0035 17.5 0.9 6.1 7.1 0.0 3.5 4 1 0 4 4 3 0 Helix-turn-helix domain HTH_AsnC-type PF13404.6 AHV92161.1 - 0.0037 17.1 2.7 0.045 13.6 1.1 2.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain RepB PF07506.11 AHV92161.1 - 0.0042 17.2 0.1 0.55 10.3 0.1 2.3 1 1 1 2 2 2 1 RepB plasmid partitioning protein GntR PF00392.21 AHV92161.1 - 0.0053 16.4 0.8 0.5 10.1 0.3 2.5 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_Tnp_1 PF01527.20 AHV92161.1 - 0.0057 16.9 0.5 0.11 12.8 0.0 2.6 1 1 1 2 2 2 1 Transposase HTH_10 PF04967.12 AHV92161.1 - 0.0077 16.0 0.1 0.049 13.4 0.2 2.2 2 0 0 2 2 2 1 HTH DNA binding domain HTH_35 PF13693.6 AHV92161.1 - 0.0094 16.0 1.5 0.073 13.1 0.6 2.7 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding UPF0175 PF03683.13 AHV92161.1 - 0.014 15.1 0.4 0.1 12.3 0.1 2.4 2 1 0 2 2 2 0 Uncharacterised protein family (UPF0175) HTH_30 PF13556.6 AHV92161.1 - 0.015 15.1 0.1 2 8.3 0.0 2.6 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain HTH_37 PF13744.6 AHV92161.1 - 0.016 15.2 0.1 0.13 12.3 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Tnp_4 PF13613.6 AHV92161.1 - 0.016 14.9 0.1 0.067 12.9 0.0 2.0 2 0 0 2 2 1 0 Helix-turn-helix of DDE superfamily endonuclease HTH_36 PF13730.6 AHV92161.1 - 0.02 14.8 0.1 0.58 10.2 0.0 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain KORA PF16509.5 AHV92161.1 - 0.035 14.4 0.1 3.6 8.0 0.0 3.0 3 0 0 3 3 3 0 TrfB plasmid transcriptional repressor MarR PF01047.22 AHV92161.1 - 0.045 13.7 0.1 0.14 12.1 0.1 1.8 2 0 0 2 2 1 0 MarR family P22_Cro PF14549.6 AHV92161.1 - 0.051 13.4 1.6 9.6 6.1 0.1 2.5 2 0 0 2 2 2 0 DNA-binding transcriptional regulator Cro Crp PF00325.20 AHV92161.1 - 0.052 13.2 3.2 0.062 13.0 0.5 2.5 3 0 0 3 3 3 0 Bacterial regulatory proteins, crp family DDE_Tnp_IS240 PF13610.6 AHV92161.1 - 0.065 13.5 0.1 0.096 12.9 0.1 1.3 1 0 0 1 1 1 0 DDE domain DUF746 PF05344.11 AHV92161.1 - 0.085 12.7 0.1 0.98 9.3 0.0 2.3 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) HTH_1 PF00126.27 AHV92161.1 - 0.1 12.5 2.8 4.7 7.2 0.5 2.6 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_26 PF13443.6 AHV92161.1 - 0.17 12.3 0.0 3.6 8.1 0.1 2.8 3 0 0 3 3 3 0 Cro/C1-type HTH DNA-binding domain HTH_8 PF02954.19 AHV92161.1 - 0.19 11.5 0.9 14 5.5 0.7 2.7 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family HTH_Tnp_Tc3_2 PF01498.18 AHV92161.1 - 0.27 11.5 2.6 0.47 10.7 0.1 2.6 3 0 0 3 3 1 0 Transposase HTH_33 PF13592.6 AHV92161.1 - 0.56 9.9 3.1 2.9 7.6 0.1 3.4 4 0 0 4 4 2 0 Winged helix-turn helix MerR PF00376.23 AHV92161.1 - 0.73 9.7 6.8 3.2 7.6 0.0 3.6 4 0 0 4 4 2 0 MerR family regulatory protein Smr PF01713.21 AHV92162.1 - 2.1e-23 82.4 0.4 2.1e-23 82.4 0.4 1.7 2 0 0 2 2 2 1 Smr domain UDG PF03167.19 AHV92163.1 - 4.7e-46 156.6 0.0 6.2e-46 156.2 0.0 1.2 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily BPD_transp_1 PF00528.22 AHV92164.1 - 5.2e-17 62.2 19.3 5.2e-17 62.2 19.3 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF4492 PF14899.6 AHV92164.1 - 0.0091 15.9 0.2 0.036 14.0 0.2 2.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4492) SelK_SelG PF10961.8 AHV92164.1 - 0.65 10.6 1.8 1 10.0 0.1 2.2 2 1 1 3 3 3 0 Selenoprotein SelK_SelG Peptidase_M61_N PF17899.1 AHV92165.1 - 3e-48 164.1 0.0 4.5e-48 163.5 0.0 1.3 1 0 0 1 1 1 1 Peptidase M61 N-terminal domain Peptidase_M61 PF05299.12 AHV92165.1 - 1.7e-46 157.5 0.0 3.3e-46 156.5 0.0 1.5 1 0 0 1 1 1 1 M61 glycyl aminopeptidase PDZ_2 PF13180.6 AHV92165.1 - 7.4e-11 42.2 0.0 1.2e-10 41.5 0.0 1.3 1 0 0 1 1 1 1 PDZ domain PDZ_6 PF17820.1 AHV92165.1 - 3.6e-05 23.5 0.1 9e-05 22.3 0.1 1.6 1 0 0 1 1 1 1 PDZ domain PDZ PF00595.24 AHV92165.1 - 0.00017 21.8 0.0 0.00029 21.1 0.0 1.3 1 0 0 1 1 1 1 PDZ domain MORN PF02493.20 AHV92165.1 - 0.02 14.7 0.0 3.6 7.7 0.0 2.7 2 0 0 2 2 2 0 MORN repeat Tricorn_PDZ PF14685.6 AHV92165.1 - 0.19 11.7 0.0 0.44 10.6 0.0 1.5 1 0 0 1 1 1 0 Tricorn protease PDZ domain LysR_substrate PF03466.20 AHV92166.1 - 3.5e-37 127.8 1.6 4.3e-37 127.5 1.6 1.1 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 AHV92166.1 - 2.7e-11 43.3 0.0 5.3e-11 42.3 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family CbiA PF01656.23 AHV92167.1 - 5.4e-17 62.0 0.1 7.8e-17 61.5 0.1 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 AHV92167.1 - 8.1e-16 58.4 0.0 1.7e-15 57.4 0.0 1.5 1 1 0 1 1 1 1 AAA domain ParA PF10609.9 AHV92167.1 - 4.4e-14 52.5 0.3 1.4e-13 50.9 0.3 1.9 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 AHV92167.1 - 4.5e-07 29.3 1.0 4.1e-06 26.2 1.1 2.3 3 0 0 3 3 3 1 Anion-transporting ATPase MipZ PF09140.11 AHV92167.1 - 2.4e-06 27.0 0.1 4.7e-06 26.1 0.1 1.5 1 1 0 1 1 1 1 ATPase MipZ CBP_BcsQ PF06564.12 AHV92167.1 - 5.8e-05 22.7 0.0 8.9e-05 22.1 0.0 1.3 1 0 0 1 1 1 1 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 AHV92167.1 - 0.00012 21.7 1.0 0.0012 18.4 1.0 2.2 1 1 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_24 PF13479.6 AHV92167.1 - 0.00049 19.9 0.0 0.00062 19.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain MeaB PF03308.16 AHV92167.1 - 0.0041 16.1 0.4 0.016 14.2 0.4 1.8 1 1 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB SRP54 PF00448.22 AHV92167.1 - 0.054 13.1 0.8 0.58 9.8 0.5 2.1 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain CLP1_P PF16575.5 AHV92167.1 - 0.075 12.8 0.1 0.15 11.8 0.1 1.5 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop VirC1 PF07015.11 AHV92167.1 - 0.16 11.2 0.4 0.45 9.8 0.2 1.8 2 0 0 2 2 2 0 VirC1 protein BPD_transp_1 PF00528.22 AHV92168.1 - 9.4e-35 120.0 8.5 9.4e-35 120.0 8.5 1.4 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF2325 PF10087.9 AHV92169.1 - 6.4e-18 64.7 0.1 7.9e-18 64.4 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2325) DUF2157 PF09925.9 AHV92170.1 - 4.2e-25 88.3 19.1 4.2e-25 88.3 19.1 2.1 2 0 0 2 2 2 1 Predicted membrane protein (DUF2157) Aconitase PF00330.20 AHV92171.1 - 4e-154 514.0 0.0 5.3e-154 513.6 0.0 1.1 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.19 AHV92171.1 - 2.2e-38 131.5 0.0 3.7e-38 130.8 0.0 1.4 1 0 0 1 1 1 1 Aconitase C-terminal domain Thiolase_N PF00108.23 AHV92172.1 - 1.4e-55 188.5 0.0 2e-55 188.0 0.0 1.2 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 AHV92172.1 - 1e-41 141.4 0.1 1.7e-41 140.7 0.1 1.4 1 0 0 1 1 1 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 AHV92172.1 - 1.4e-05 24.8 0.1 1.4e-05 24.8 0.1 2.2 3 0 0 3 3 3 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.10 AHV92172.1 - 0.3 11.0 1.9 0.59 10.0 0.1 2.3 3 0 0 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Acetyltransf_1 PF00583.25 AHV92173.1 - 4.1e-13 49.6 0.1 5e-13 49.3 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 AHV92173.1 - 4.1e-09 36.4 0.0 5.1e-09 36.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 AHV92173.1 - 3.2e-06 27.5 0.1 4.1e-06 27.1 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 AHV92173.1 - 0.00063 19.7 0.0 0.00098 19.1 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_CG PF14542.6 AHV92173.1 - 0.0012 19.0 0.1 0.0024 18.0 0.1 1.6 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.7 AHV92173.1 - 0.009 16.1 0.1 0.012 15.6 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 AHV92173.1 - 0.032 13.9 0.8 0.044 13.5 0.8 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF4089 PF13318.6 AHV92174.1 - 3.7e-09 36.9 1.2 4.2e-09 36.7 1.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF4089) Iso_dh PF00180.20 AHV92175.1 - 4.7e-16 58.9 0.0 5.4e-16 58.7 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase LysR_substrate PF03466.20 AHV92176.1 - 8.5e-36 123.3 1.5 1.1e-35 123.0 1.5 1.1 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 AHV92176.1 - 6.3e-18 64.5 0.1 1.3e-17 63.5 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_psq PF05225.16 AHV92176.1 - 0.039 13.7 0.3 0.081 12.7 0.0 1.6 2 0 0 2 2 2 0 helix-turn-helix, Psq domain HTH_24 PF13412.6 AHV92176.1 - 0.044 13.4 0.0 0.087 12.4 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_30 PF13556.6 AHV92176.1 - 0.078 12.8 0.1 0.15 11.9 0.1 1.4 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_8 PF02954.19 AHV92176.1 - 0.11 12.3 0.0 0.25 11.1 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family MFS_1 PF07690.16 AHV92177.1 - 3.1e-09 36.2 26.3 3.7e-09 36.0 26.3 1.0 1 0 0 1 1 1 1 Major Facilitator Superfamily HCV_NS4a PF01006.20 AHV92177.1 - 0.042 13.6 2.2 0.042 13.6 2.2 2.9 2 1 0 2 2 2 0 Hepatitis C virus non-structural protein NS4a GST_N_3 PF13417.6 AHV92178.1 - 5.1e-12 46.0 0.0 9.6e-12 45.2 0.0 1.3 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.6 AHV92178.1 - 3.2e-08 33.7 0.0 5.2e-08 33.1 0.0 1.3 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N PF02798.20 AHV92178.1 - 5.4e-08 33.1 0.0 1.3e-07 31.9 0.0 1.6 2 0 0 2 2 2 1 Glutathione S-transferase, N-terminal domain GST_C_2 PF13410.6 AHV92178.1 - 1.6e-06 28.0 1.3 1.6e-06 28.0 1.3 2.2 2 1 0 2 2 2 1 Glutathione S-transferase, C-terminal domain GST_C_4 PF14834.6 AHV92178.1 - 0.0021 18.4 0.0 0.0043 17.4 0.0 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C_3 PF14497.6 AHV92178.1 - 0.0073 16.5 0.0 0.054 13.7 0.0 2.2 2 1 0 2 2 2 1 Glutathione S-transferase, C-terminal domain Retrotran_gag_3 PF14244.6 AHV92178.1 - 0.17 11.7 1.2 0.44 10.4 0.8 1.8 2 0 0 2 2 2 0 gag-polypeptide of LTR copia-type AP_endonuc_2 PF01261.24 AHV92179.1 - 1.6e-28 99.6 0.1 1.8e-28 99.4 0.1 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel CLP_protease PF00574.23 AHV92181.1 - 1.5e-59 201.0 0.0 1.8e-59 200.7 0.0 1.0 1 0 0 1 1 1 1 Clp protease MFS_1 PF07690.16 AHV92182.1 - 2.4e-36 125.4 38.5 2.4e-36 125.4 38.5 1.7 1 1 1 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.24 AHV92182.1 - 9.5e-06 24.7 10.4 9.5e-06 24.7 10.4 2.2 1 1 1 2 2 2 1 Sugar (and other) transporter YlaH PF14036.6 AHV92182.1 - 0.011 16.1 1.2 0.12 12.7 0.1 2.9 2 0 0 2 2 2 0 YlaH-like protein RF-1 PF00472.20 AHV92183.1 - 7.5e-23 80.7 0.3 9.7e-23 80.3 0.3 1.1 1 0 0 1 1 1 1 RF-1 domain Peptidase_A8 PF01252.18 AHV92184.1 - 1.7e-40 138.5 6.2 2e-40 138.3 6.2 1.0 1 0 0 1 1 1 1 Signal peptidase (SPase) II MlrC_C PF07171.12 AHV92185.1 - 1.9e-21 77.0 0.0 2e-21 76.9 0.0 1.0 1 0 0 1 1 1 1 MlrC C-terminus TetR_N PF00440.23 AHV92186.1 - 5.7e-14 51.6 0.2 1.6e-13 50.2 0.1 1.9 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family ZnuA PF01297.17 AHV92186.1 - 0.2 11.0 0.0 0.28 10.6 0.0 1.3 1 0 0 1 1 1 0 Zinc-uptake complex component A periplasmic ADH_zinc_N PF00107.26 AHV92187.1 - 7.3e-26 90.7 0.0 2.2e-25 89.1 0.0 1.8 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 AHV92187.1 - 1.4e-15 58.5 0.0 3e-15 57.4 0.0 1.6 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 AHV92187.1 - 4.3e-10 39.4 0.0 1.3e-09 37.9 0.0 1.8 1 1 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain BPD_transp_1 PF00528.22 AHV92188.1 - 4.6e-18 65.6 15.7 9.6e-15 54.8 8.0 3.0 3 1 0 3 3 3 2 Binding-protein-dependent transport system inner membrane component CrgA PF06781.12 AHV92188.1 - 0.06 13.4 0.1 0.06 13.4 0.1 3.5 3 1 1 4 4 4 0 Cell division protein CrgA Hydrolase PF00702.26 AHV92189.1 - 0.00022 21.6 0.0 0.0011 19.3 0.0 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 AHV92189.1 - 0.00058 20.3 0.0 0.00072 20.0 0.0 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 AHV92189.1 - 0.029 14.4 0.0 0.039 14.0 0.0 1.2 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase PCMT PF01135.19 AHV92189.1 - 0.045 13.5 0.0 0.058 13.1 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) ACR_tran PF00873.19 AHV92190.1 - 0 1056.6 19.5 0 1056.4 19.5 1.0 1 0 0 1 1 1 1 AcrB/AcrD/AcrF family SecD_SecF PF02355.16 AHV92190.1 - 2.4e-06 27.0 27.6 0.00067 19.1 13.0 2.5 2 0 0 2 2 2 2 Protein export membrane protein DUF3094 PF11293.8 AHV92190.1 - 5.1 6.9 5.6 2.5 7.9 0.4 3.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3094) COX3 PF00510.18 AHV92191.1 - 6.2e-16 59.0 15.7 8e-16 58.6 15.7 1.1 1 0 0 1 1 1 1 Cytochrome c oxidase subunit III 7TM_GPCR_Srz PF10325.9 AHV92191.1 - 0.0094 15.3 3.5 0.068 12.5 3.5 2.1 1 1 0 1 1 1 1 Serpentine type 7TM GPCR chemoreceptor Srz EamA PF00892.20 AHV92192.1 - 3.3e-28 98.6 36.7 1.1e-14 54.8 16.3 2.0 2 0 0 2 2 2 2 EamA-like transporter family Gate PF07670.14 AHV92194.1 - 0.0036 17.6 0.5 0.0036 17.6 0.5 2.1 2 1 0 2 2 2 1 Nucleoside recognition KASH PF10541.9 AHV92194.1 - 0.032 14.5 0.1 0.097 13.0 0.1 1.8 1 0 0 1 1 1 0 Nuclear envelope localisation domain DNA_ligase_aden PF01653.18 AHV92195.1 - 1.7e-120 401.9 0.0 7e-119 396.6 0.0 2.1 1 1 0 1 1 1 1 NAD-dependent DNA ligase adenylation domain DNA_ligase_OB PF03120.16 AHV92195.1 - 3.3e-35 119.8 4.0 7.4e-35 118.7 4.0 1.6 1 0 0 1 1 1 1 NAD-dependent DNA ligase OB-fold domain HHH_2 PF12826.7 AHV92195.1 - 6.1e-26 90.3 0.1 6.5e-25 87.0 0.0 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.6 AHV92195.1 - 1.2e-15 57.8 0.1 3.7e-07 30.6 0.3 2.5 2 0 0 2 2 2 2 Helix-hairpin-helix domain DNA_ligase_ZBD PF03119.16 AHV92195.1 - 2.8e-12 46.4 3.4 3e-12 46.3 1.9 2.0 2 0 0 2 2 2 1 NAD-dependent DNA ligase C4 zinc finger domain BRCT PF00533.26 AHV92195.1 - 1.3e-10 41.5 0.0 2.3e-10 40.7 0.0 1.4 1 0 0 1 1 1 1 BRCA1 C Terminus (BRCT) domain HHH PF00633.23 AHV92195.1 - 3.8e-06 26.5 0.6 8.8e-05 22.2 0.0 3.4 4 0 0 4 4 4 1 Helix-hairpin-helix motif PTCB-BRCT PF12738.7 AHV92195.1 - 2.5e-05 24.1 0.0 5.6e-05 23.0 0.0 1.6 1 0 0 1 1 1 1 twin BRCT domain zf-NADH-PPase PF09297.11 AHV92195.1 - 0.24 11.1 0.6 0.64 9.7 0.6 1.7 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain Cys_rich_KTR PF14205.6 AHV92195.1 - 0.24 11.2 0.1 0.5 10.2 0.1 1.4 1 0 0 1 1 1 0 Cysteine-rich KTR PBP PF01161.20 AHV92196.1 - 7.2e-16 58.7 0.0 8.1e-16 58.5 0.0 1.1 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein BPD_transp_1 PF00528.22 AHV92197.1 - 5.3e-26 91.5 15.1 7.2e-26 91.1 15.1 1.1 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component NTP_transf_3 PF12804.7 AHV92198.1 - 1.8e-29 103.2 7.1 2.2e-29 102.9 7.1 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain GTP_EFTU PF00009.27 AHV92199.1 - 4.6e-53 179.6 0.2 7.6e-53 179.0 0.2 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain LepA_C PF06421.12 AHV92199.1 - 5.9e-49 164.7 3.2 1e-48 164.0 3.2 1.4 1 0 0 1 1 1 1 GTP-binding protein LepA C-terminus EFG_C PF00679.24 AHV92199.1 - 6.2e-24 83.8 0.0 1.7e-23 82.5 0.0 1.8 1 0 0 1 1 1 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.25 AHV92199.1 - 6.7e-10 39.2 0.1 1.6e-09 38.0 0.1 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 AHV92199.1 - 1.8e-05 24.7 0.0 4.7e-05 23.4 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase RF3_C PF16658.5 AHV92199.1 - 5e-05 23.1 0.1 0.0001 22.1 0.1 1.5 1 0 0 1 1 1 1 Class II release factor RF3, C-terminal domain Ras PF00071.22 AHV92199.1 - 0.00038 20.1 0.0 0.00071 19.2 0.0 1.4 1 0 0 1 1 1 1 Ras family SRPRB PF09439.10 AHV92199.1 - 0.0047 16.4 0.0 0.01 15.3 0.0 1.6 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit EFG_II PF14492.6 AHV92199.1 - 0.0053 16.8 0.2 0.047 13.8 0.2 2.3 1 1 0 1 1 1 1 Elongation Factor G, domain II MMR_HSR1_Xtn PF16897.5 AHV92199.1 - 0.13 12.3 0.0 0.34 10.9 0.0 1.7 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain DDE_Tnp_ISL3 PF01610.17 AHV92200.1 - 7.9e-65 218.9 1.2 1.1e-64 218.4 0.3 1.6 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV92200.1 - 1.4e-11 43.6 0.1 3.6e-11 42.3 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV92200.1 - 5.3e-09 36.6 11.2 1.1e-08 35.6 11.2 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV92200.1 - 0.0056 16.7 0.2 0.016 15.3 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain SLT_L PF14718.6 AHV92200.1 - 0.016 15.3 1.5 0.016 15.3 1.5 1.8 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain NOB1_Zn_bind PF08772.11 AHV92200.1 - 0.017 15.2 0.2 1.2 9.3 0.0 2.5 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-IS66 PF13005.7 AHV92200.1 - 8.2 6.9 9.6 3.6 8.1 6.6 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 CSD PF00313.22 AHV92201.1 - 3.8e-29 100.3 0.2 4.2e-29 100.2 0.2 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain OB_RNB PF08206.11 AHV92201.1 - 0.021 14.5 0.1 0.028 14.1 0.1 1.4 1 0 0 1 1 1 0 Ribonuclease B OB domain ATP-synt_ab PF00006.25 AHV92202.1 - 5.4e-75 251.7 0.2 9.2e-75 250.9 0.2 1.4 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.27 AHV92202.1 - 8.4e-46 155.4 1.9 1.3e-45 154.8 1.9 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.23 AHV92202.1 - 4.2e-17 62.4 1.3 1.9e-16 60.3 1.6 2.0 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.10 AHV92202.1 - 3.1e-06 27.2 0.5 3.1e-06 27.2 0.5 2.4 3 0 0 3 3 3 1 HAS barrel domain Ring_hydroxyl_A PF00848.19 AHV92203.1 - 6e-09 36.2 0.5 6.4e-09 36.1 0.5 1.0 1 0 0 1 1 1 1 Ring hydroxylating alpha subunit (catalytic domain) EF_TS PF00889.19 AHV92204.1 - 1.7e-69 233.6 0.9 2.5e-69 233.1 0.9 1.2 1 0 0 1 1 1 1 Elongation factor TS DUF4889 PF16230.5 AHV92204.1 - 0.088 13.1 0.2 24 5.2 0.0 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4889) COX4_pro PF03626.14 AHV92205.1 - 1.8e-16 60.3 14.0 2.2e-16 60.0 14.0 1.1 1 0 0 1 1 1 1 Prokaryotic Cytochrome C oxidase subunit IV DUF983 PF06170.12 AHV92205.1 - 0.0015 18.9 6.3 0.082 13.3 2.1 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF983) Ceramidase PF05875.12 AHV92205.1 - 0.0052 16.2 2.8 0.0061 16.0 2.8 1.0 1 0 0 1 1 1 1 Ceramidase DUF3792 PF12670.7 AHV92205.1 - 0.096 12.8 14.6 0.092 12.9 4.8 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3792) Phtf-FEM1B_bdg PF12129.8 AHV92205.1 - 0.13 12.1 1.5 0.15 11.9 1.5 1.1 1 0 0 1 1 1 0 Male germ-cell putative homeodomain transcription factor Sec61_beta PF03911.16 AHV92205.1 - 0.15 12.1 1.3 0.15 12.1 1.3 2.9 3 1 0 3 3 3 0 Sec61beta family ATP-synt_I PF03899.15 AHV92205.1 - 0.15 12.5 10.6 1.5 9.2 11.6 1.9 1 1 1 2 2 2 0 ATP synthase I chain ABC2_membrane PF01061.24 AHV92205.1 - 0.19 11.1 13.5 0.21 11.0 13.5 1.0 1 0 0 1 1 1 0 ABC-2 type transporter DUF1218 PF06749.12 AHV92205.1 - 0.27 11.8 5.4 6.3 7.4 2.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1218) DUF2976 PF11190.8 AHV92205.1 - 0.29 11.0 10.1 0.79 9.6 6.8 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2976) YfhO PF09586.10 AHV92205.1 - 0.33 9.1 6.2 0.36 9.0 6.2 1.0 1 0 0 1 1 1 0 Bacterial membrane protein YfhO DUF846 PF05832.12 AHV92205.1 - 0.87 9.6 11.0 2.1 8.4 1.2 2.1 1 1 1 2 2 2 0 Eukaryotic protein of unknown function (DUF846) DUF5518 PF17647.1 AHV92205.1 - 1.4 9.1 14.5 0.89 9.7 5.7 2.1 1 1 1 2 2 2 0 Family of unknown function (DUF5518) DUF5391 PF17369.2 AHV92205.1 - 1.6 8.8 13.0 0.2 11.7 5.4 2.0 1 1 1 2 2 2 0 Family of unknown function (DUF5391) FTR1 PF03239.14 AHV92205.1 - 2.2 7.4 11.8 4.6 6.3 11.8 1.6 1 1 0 1 1 1 0 Iron permease FTR1 family LptF_LptG PF03739.14 AHV92205.1 - 3.5 6.4 11.2 4.3 6.1 11.2 1.1 1 0 0 1 1 1 0 Lipopolysaccharide export system permease LptF/LptG DUF5326 PF17260.2 AHV92205.1 - 8 6.7 16.9 0.5 10.5 0.6 3.0 2 1 1 3 3 3 0 Family of unknown function (DUF5326) TonB_dep_Rec PF00593.24 AHV92206.1 - 4e-45 155.6 36.1 1.2e-44 154.0 36.1 1.7 1 1 0 1 1 1 1 TonB dependent receptor Plug PF07715.15 AHV92206.1 - 2.5e-21 76.3 2.5 6.8e-21 74.9 2.5 1.7 1 0 0 1 1 1 1 TonB-dependent Receptor Plug Domain OMP_b-brl_3 PF14905.6 AHV92206.1 - 2.9e-06 26.5 0.0 7.2e-06 25.2 0.0 1.5 1 1 0 1 1 1 1 Outer membrane protein beta-barrel family Germane PF10646.9 AHV92206.1 - 0.14 12.9 0.0 1.9 9.3 0.0 2.4 2 0 0 2 2 2 0 Sporulation and spore germination DUF3717 PF12512.8 AHV92207.1 - 5.1e-27 93.5 1.6 7.5e-27 93.0 1.6 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3717) DUF4170 PF13773.6 AHV92207.1 - 0.05 13.8 0.2 8.8 6.6 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4170) Sigma70_r4_2 PF08281.12 AHV92208.1 - 3.5e-17 61.8 0.8 8.8e-17 60.5 0.8 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r2 PF04542.14 AHV92208.1 - 1.7e-16 59.7 2.7 2.9e-16 59.0 2.7 1.4 1 0 0 1 1 1 1 Sigma-70 region 2 Sigma70_r4 PF04545.16 AHV92208.1 - 5e-10 38.7 0.6 1.1e-09 37.6 0.6 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_ECF PF07638.11 AHV92208.1 - 6.5e-05 22.9 1.8 8.7e-05 22.5 1.8 1.3 1 0 0 1 1 1 1 ECF sigma factor HTH_23 PF13384.6 AHV92208.1 - 0.005 16.6 0.2 0.005 16.6 0.2 2.6 2 1 1 3 3 3 1 Homeodomain-like domain HTH_30 PF13556.6 AHV92208.1 - 0.021 14.6 0.1 0.047 13.5 0.1 1.6 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain DUF134 PF02001.16 AHV92208.1 - 0.053 14.1 0.1 0.082 13.5 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function DUF134 HTH_28 PF13518.6 AHV92208.1 - 0.065 13.4 0.1 0.065 13.4 0.1 2.8 3 1 1 4 4 4 0 Helix-turn-helix domain rve_3 PF13683.6 AHV92209.1 - 1.1e-31 108.4 0.0 2.8e-31 107.1 0.0 1.7 2 0 0 2 2 2 1 Integrase core domain rve PF00665.26 AHV92209.1 - 1.5e-20 73.5 0.0 2.5e-20 72.8 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain rve_2 PF13333.6 AHV92209.1 - 4.7e-07 29.9 0.0 8.4e-07 29.1 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AHV92209.1 - 0.00031 21.0 0.0 0.00053 20.2 0.0 1.4 1 1 0 1 1 1 1 DDE domain Abhydrolase_9_N PF15420.6 AHV92210.1 - 0.58 10.1 9.9 0.78 9.7 1.1 2.5 2 1 0 2 2 2 0 Alpha/beta-hydrolase family N-terminus Peptidase_M48_N PF16491.5 AHV92212.1 - 1.1e-52 178.6 2.0 1.1e-52 178.6 2.0 2.2 2 1 0 2 2 2 1 CAAX prenyl protease N-terminal, five membrane helices Peptidase_M48 PF01435.18 AHV92212.1 - 9.4e-36 123.4 0.0 2.2e-35 122.2 0.0 1.6 1 1 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 AHV92212.1 - 3.6e-05 23.1 0.1 9.5e-05 21.7 0.1 1.7 1 0 0 1 1 1 1 BlaR1 peptidase M56 DUF2268 PF10026.9 AHV92212.1 - 0.0024 17.5 0.0 0.0035 16.9 0.0 1.2 1 0 0 1 1 1 1 Predicted Zn-dependent protease (DUF2268) SprT-like PF10263.9 AHV92212.1 - 0.062 13.2 0.0 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 SprT-like family Acyl-CoA_dh_1 PF00441.24 AHV92213.1 - 3.8e-37 127.8 0.3 3.8e-37 127.8 0.3 1.7 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 AHV92213.1 - 5e-24 85.1 0.1 1.1e-23 84.1 0.1 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 AHV92213.1 - 1.6e-21 76.3 0.0 2.6e-21 75.6 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 AHV92213.1 - 2.7e-18 66.6 0.4 6.5e-18 65.3 0.4 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Metallophos PF00149.28 AHV92214.1 - 1.6e-11 45.1 0.1 3.4e-11 44.0 0.1 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 AHV92214.1 - 0.00034 20.8 0.0 0.00049 20.3 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain FBPase_2 PF06874.11 AHV92214.1 - 0.077 11.3 0.0 0.15 10.3 0.0 1.4 1 0 0 1 1 1 0 Firmicute fructose-1,6-bisphosphatase AA_permease_2 PF13520.6 AHV92216.1 - 7.7e-49 166.7 48.6 7.7e-49 166.7 48.6 1.4 1 1 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 AHV92216.1 - 1.5e-23 83.1 38.9 2e-23 82.7 38.9 1.1 1 0 0 1 1 1 1 Amino acid permease Trp_Tyr_perm PF03222.13 AHV92216.1 - 2.3e-05 23.6 20.7 2.3e-05 23.6 20.7 2.1 2 0 0 2 2 2 1 Tryptophan/tyrosine permease family Bac_transf PF02397.16 AHV92217.1 - 6.4e-55 185.6 0.0 7.8e-55 185.3 0.0 1.0 1 0 0 1 1 1 1 Bacterial sugar transferase OEP PF02321.18 AHV92218.1 - 3e-47 160.9 28.8 8.2e-27 94.2 15.6 2.2 2 0 0 2 2 2 2 Outer membrane efflux protein EzrA PF06160.12 AHV92218.1 - 0.028 12.6 0.1 0.19 9.9 0.2 1.9 2 0 0 2 2 2 0 Septation ring formation regulator, EzrA DUF3347 PF11827.8 AHV92218.1 - 0.19 11.9 3.0 0.36 11.0 3.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3347) APG6_N PF17675.1 AHV92218.1 - 0.56 10.7 3.7 0.27 11.7 1.0 1.9 2 0 0 2 2 2 0 Apg6 coiled-coil region rve_3 PF13683.6 AHV92220.1 - 1.8e-31 107.7 0.0 4.1e-31 106.6 0.0 1.6 2 0 0 2 2 2 1 Integrase core domain rve PF00665.26 AHV92220.1 - 2.4e-23 82.6 0.0 4.1e-23 81.8 0.0 1.3 1 0 0 1 1 1 1 Integrase core domain rve_2 PF13333.6 AHV92220.1 - 7e-07 29.3 0.0 1.2e-06 28.6 0.0 1.3 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AHV92220.1 - 0.00065 19.9 0.0 0.00099 19.3 0.0 1.4 1 0 0 1 1 1 1 DDE domain TPP_enzyme_N PF02776.18 AHV92221.1 - 6.3e-33 113.8 1.7 6.3e-33 113.8 1.7 1.9 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 AHV92221.1 - 1.6e-24 86.4 0.2 4.7e-24 84.9 0.2 1.8 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain XFP_N PF09364.10 AHV92221.1 - 0.0021 17.0 0.1 0.0034 16.2 0.1 1.2 1 0 0 1 1 1 1 XFP N-terminal domain POR PF01558.18 AHV92222.1 - 5.4e-08 33.1 0.0 8.9e-08 32.4 0.0 1.4 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase DUF3701 PF12482.8 AHV92222.1 - 0.077 13.1 0.4 0.23 11.5 0.4 1.8 1 0 0 1 1 1 0 Phage integrase protein GGDEF PF00990.21 AHV92223.1 - 1.4e-43 148.5 0.7 2.3e-43 147.7 0.1 1.7 2 1 0 2 2 2 1 Diguanylate cyclase, GGDEF domain GGDEF_2 PF17853.1 AHV92223.1 - 0.025 14.8 2.3 0.072 13.3 0.2 2.6 1 1 1 2 2 2 0 GGDEF-like domain CDC37_N PF03234.14 AHV92223.1 - 0.064 14.2 0.2 0.1 13.5 0.2 1.3 1 0 0 1 1 1 0 Cdc37 N terminal kinase binding Ala_racemase_N PF01168.20 AHV92224.1 - 4.9e-25 88.5 7.0 6.9e-25 88.0 7.0 1.2 1 0 0 1 1 1 1 Alanine racemase, N-terminal domain D-ser_dehydrat PF14031.6 AHV92224.1 - 1.1e-16 61.2 0.1 5.6e-16 59.0 0.0 2.2 2 0 0 2 2 2 1 Putative serine dehydratase domain GlnE PF03710.15 AHV92225.1 - 5.7e-122 405.9 10.5 4.4e-61 206.5 0.3 2.8 3 0 0 3 3 3 2 Glutamate-ammonia ligase adenylyltransferase GlnD_UR_UTase PF08335.11 AHV92225.1 - 1.7e-46 158.0 15.1 1.5e-39 135.4 3.6 3.2 4 0 0 4 4 4 2 GlnD PII-uridylyltransferase DUF294 PF03445.13 AHV92225.1 - 1.1e-06 28.5 0.1 0.0068 16.2 0.0 2.6 2 0 0 2 2 2 2 Putative nucleotidyltransferase DUF294 DUF294_C PF10335.9 AHV92225.1 - 0.0032 17.3 3.7 0.37 10.6 1.5 3.6 3 0 0 3 3 3 1 Putative nucleotidyltransferase substrate binding domain Polbeta PF18765.1 AHV92225.1 - 0.015 15.4 0.0 2.7 8.2 0.0 3.1 3 0 0 3 3 3 0 Polymerase beta, Nucleotidyltransferase GerE PF00196.19 AHV92226.1 - 4.4e-20 71.0 0.3 6.4e-20 70.4 0.3 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Response_reg PF00072.24 AHV92226.1 - 8.5e-12 45.2 0.2 2.7e-07 30.8 0.1 2.3 1 1 1 2 2 2 2 Response regulator receiver domain Sigma70_r4_2 PF08281.12 AHV92226.1 - 2.7e-05 23.8 0.3 5.3e-05 22.8 0.3 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.6 AHV92226.1 - 0.0013 18.4 0.3 0.0031 17.3 0.3 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_24 PF13412.6 AHV92226.1 - 0.0016 18.0 0.6 0.0031 17.0 0.6 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_29 PF13551.6 AHV92226.1 - 0.013 15.5 0.1 0.026 14.5 0.1 1.6 1 0 0 1 1 1 0 Winged helix-turn helix HTH_40 PF14493.6 AHV92226.1 - 0.017 15.5 0.2 1.4 9.4 0.2 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain LexA_DNA_bind PF01726.16 AHV92226.1 - 0.057 13.2 1.2 0.52 10.1 1.2 2.3 1 1 0 1 1 1 0 LexA DNA binding domain HTH_28 PF13518.6 AHV92226.1 - 0.065 13.4 0.6 0.18 12.0 0.3 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_36 PF13730.6 AHV92226.1 - 0.066 13.2 0.1 0.13 12.3 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4 PF04545.16 AHV92226.1 - 0.099 12.2 0.8 0.23 11.0 0.8 1.6 1 1 0 1 1 1 0 Sigma-70, region 4 LZ_Tnp_IS481 PF13011.6 AHV92227.1 - 2.3e-22 79.3 2.6 4.6e-20 71.9 0.4 2.3 1 1 1 2 2 2 1 leucine-zipper of insertion element IS481 HTH_23 PF13384.6 AHV92227.1 - 2.6e-17 62.1 4.4 6.1e-08 32.2 0.1 2.3 2 0 0 2 2 2 2 Homeodomain-like domain HTH_28 PF13518.6 AHV92227.1 - 1.3e-16 60.4 2.6 2.9e-11 43.3 0.1 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_29 PF13551.6 AHV92227.1 - 3.9e-12 46.0 0.6 1.3e-06 28.3 0.0 2.3 2 0 0 2 2 2 2 Winged helix-turn helix HTH_32 PF13565.6 AHV92227.1 - 2.3e-11 44.1 0.7 4.3e-11 43.3 0.7 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_38 PF13936.6 AHV92227.1 - 2.1e-06 27.4 1.8 4.5e-06 26.3 1.1 1.9 2 1 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 AHV92227.1 - 4.2e-06 26.5 3.4 5e-05 23.1 1.2 2.3 2 0 0 2 2 2 1 MarR family HTH_Tnp_ISL3 PF13542.6 AHV92227.1 - 5.9e-06 25.6 1.9 0.0011 18.4 0.6 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 Sigma70_r4_2 PF08281.12 AHV92227.1 - 1.2e-05 24.9 0.1 0.0035 17.0 0.3 2.3 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 AHV92227.1 - 2.3e-05 23.8 0.1 0.00031 20.2 0.2 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 YdaS_antitoxin PF15943.5 AHV92227.1 - 9.9e-05 22.1 0.3 0.13 12.1 0.0 2.6 2 0 0 2 2 2 2 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_24 PF13412.6 AHV92227.1 - 0.00012 21.5 0.2 0.0012 18.4 0.3 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_3 PF01381.22 AHV92227.1 - 0.00013 22.0 0.7 0.0076 16.3 0.3 2.4 2 0 0 2 2 2 1 Helix-turn-helix HTH_Crp_2 PF13545.6 AHV92227.1 - 0.0002 21.3 0.4 0.0015 18.5 0.2 2.2 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_31 PF13560.6 AHV92227.1 - 0.00027 21.2 6.9 0.0014 18.9 2.8 2.9 2 2 0 2 2 2 1 Helix-turn-helix domain Trp_repressor PF01371.19 AHV92227.1 - 0.00036 20.6 0.2 0.0033 17.5 0.1 2.0 2 0 0 2 2 2 1 Trp repressor protein LacI PF00356.21 AHV92227.1 - 0.00049 19.8 1.2 0.0027 17.5 0.7 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family CENP-B_N PF04218.13 AHV92227.1 - 0.00051 19.6 0.0 0.88 9.2 0.1 2.3 2 0 0 2 2 2 2 CENP-B N-terminal DNA-binding domain HTH_5 PF01022.20 AHV92227.1 - 0.00067 19.5 0.0 0.5 10.3 0.0 2.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.19 AHV92227.1 - 0.00069 19.8 0.0 0.018 15.2 0.0 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain SpoIIID PF12116.8 AHV92227.1 - 0.00094 19.2 0.0 0.54 10.4 0.0 2.2 2 0 0 2 2 2 1 Stage III sporulation protein D HTH_IclR PF09339.10 AHV92227.1 - 0.00099 18.9 1.6 0.019 14.7 0.7 2.5 2 0 0 2 2 2 1 IclR helix-turn-helix domain RepB PF07506.11 AHV92227.1 - 0.0011 19.1 0.2 0.21 11.6 0.1 2.3 1 1 1 2 2 2 1 RepB plasmid partitioning protein HTH_11 PF08279.12 AHV92227.1 - 0.0014 18.5 0.5 0.008 16.1 0.5 2.1 2 0 0 2 2 2 1 HTH domain HTH_psq PF05225.16 AHV92227.1 - 0.0016 18.1 0.5 1.3 8.8 0.5 2.3 2 0 0 2 2 2 1 helix-turn-helix, Psq domain GntR PF00392.21 AHV92227.1 - 0.0021 17.6 0.8 0.28 10.8 0.4 2.4 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_AsnC-type PF13404.6 AHV92227.1 - 0.0023 17.7 3.1 0.03 14.2 1.4 2.6 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_Tnp_1 PF01527.20 AHV92227.1 - 0.0025 18.1 0.4 0.052 13.9 0.0 2.2 1 1 1 2 2 2 1 Transposase HTH_17 PF12728.7 AHV92227.1 - 0.003 17.7 0.1 3.5 7.9 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_10 PF04967.12 AHV92227.1 - 0.0047 16.7 0.1 0.028 14.2 0.2 2.0 2 0 0 2 2 2 1 HTH DNA binding domain HTH_35 PF13693.6 AHV92227.1 - 0.0051 16.8 0.9 0.038 14.0 0.6 2.2 1 1 1 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_30 PF13556.6 AHV92227.1 - 0.0058 16.4 0.1 0.97 9.3 0.0 2.3 2 0 0 2 2 2 1 PucR C-terminal helix-turn-helix domain UPF0175 PF03683.13 AHV92227.1 - 0.0061 16.2 0.4 0.052 13.3 0.1 2.2 2 1 1 3 3 2 1 Uncharacterised protein family (UPF0175) HTH_37 PF13744.6 AHV92227.1 - 0.0076 16.2 0.1 0.065 13.2 0.1 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Tnp_4 PF13613.6 AHV92227.1 - 0.0098 15.6 0.1 0.038 13.7 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix of DDE superfamily endonuclease Crp PF00325.20 AHV92227.1 - 0.015 15.0 1.5 0.036 13.7 0.5 2.1 2 0 0 2 2 2 0 Bacterial regulatory proteins, crp family HTH_36 PF13730.6 AHV92227.1 - 0.016 15.1 0.0 0.32 11.0 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain MerR PF00376.23 AHV92227.1 - 0.017 14.9 1.3 1.9 8.3 0.0 2.8 3 0 0 3 3 2 0 MerR family regulatory protein MarR PF01047.22 AHV92227.1 - 0.02 14.8 0.1 0.08 12.9 0.1 2.0 2 0 0 2 2 2 0 MarR family P22_Cro PF14549.6 AHV92227.1 - 0.027 14.3 2.0 5.1 7.0 0.1 2.3 2 0 0 2 2 2 0 DNA-binding transcriptional regulator Cro DUF746 PF05344.11 AHV92227.1 - 0.036 13.9 0.1 0.54 10.1 0.0 2.2 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) HTH_1 PF00126.27 AHV92227.1 - 0.046 13.7 3.0 2.7 8.0 0.5 2.4 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_DeoR PF08220.12 AHV92227.1 - 0.054 13.3 0.1 5.6 6.8 0.0 2.2 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain Glyc_hyd_38C_2 PF18230.1 AHV92227.1 - 0.059 13.5 0.0 0.63 10.2 0.0 2.1 2 0 0 2 2 2 0 Glycosyl hydrolases family 38 C-terminal sub-domain HTH_Tnp_Tc3_2 PF01498.18 AHV92227.1 - 0.076 13.3 1.5 0.24 11.7 0.1 2.5 2 0 0 2 2 2 0 Transposase Sigma54_DBD PF04552.13 AHV92227.1 - 0.09 12.5 0.1 0.16 11.7 0.1 1.4 1 0 0 1 1 1 0 Sigma-54, DNA binding domain HTH_8 PF02954.19 AHV92227.1 - 0.098 12.5 0.9 8.2 6.3 0.8 2.3 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family TrmB PF01978.19 AHV92227.1 - 0.11 12.3 0.0 0.34 10.8 0.1 1.7 2 0 0 2 2 1 0 Sugar-specific transcriptional regulator TrmB HTH_7 PF02796.15 AHV92227.1 - 0.12 12.5 0.4 0.28 11.3 0.1 1.7 2 0 0 2 2 1 0 Helix-turn-helix domain of resolvase DUF1804 PF08822.11 AHV92227.1 - 0.13 12.2 0.2 10 6.1 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1804) HTH_26 PF13443.6 AHV92227.1 - 0.19 12.2 0.0 2 8.9 0.1 2.1 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain DUF977 PF06163.11 AHV92227.1 - 0.2 11.6 0.6 11 6.0 0.1 2.3 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF977) MerR_1 PF13411.6 AHV92227.1 - 0.23 11.6 0.9 1.4 9.1 0.0 2.3 3 0 0 3 3 2 0 MerR HTH family regulatory protein Aminotran_4 PF01063.19 AHV92228.1 - 5e-41 141.0 0.0 5.9e-41 140.8 0.0 1.1 1 0 0 1 1 1 1 Amino-transferase class IV DDE_Tnp_ISL3 PF01610.17 AHV92229.1 - 7.9e-65 218.9 1.2 1.1e-64 218.4 0.3 1.6 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV92229.1 - 1.4e-11 43.6 0.1 3.6e-11 42.3 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV92229.1 - 5.3e-09 36.6 11.2 1.1e-08 35.6 11.2 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV92229.1 - 0.0056 16.7 0.2 0.016 15.3 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain SLT_L PF14718.6 AHV92229.1 - 0.016 15.3 1.5 0.016 15.3 1.5 1.8 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain NOB1_Zn_bind PF08772.11 AHV92229.1 - 0.017 15.2 0.2 1.2 9.3 0.0 2.5 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-IS66 PF13005.7 AHV92229.1 - 8.2 6.9 9.6 3.6 8.1 6.6 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Esterase PF00756.20 AHV92230.1 - 6e-54 183.3 0.0 6.9e-54 183.1 0.0 1.0 1 0 0 1 1 1 1 Putative esterase Hydrolase_4 PF12146.8 AHV92230.1 - 3.5e-05 23.2 0.1 5.3e-05 22.6 0.1 1.3 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Chlorophyllase2 PF12740.7 AHV92230.1 - 0.00011 21.2 0.0 0.00025 20.1 0.0 1.5 1 1 0 1 1 1 1 Chlorophyllase enzyme Esterase_phd PF10503.9 AHV92230.1 - 0.00016 21.2 1.3 0.0086 15.6 1.2 2.7 2 1 0 2 2 2 1 Esterase PHB depolymerase Peptidase_S9 PF00326.21 AHV92230.1 - 0.007 15.9 0.2 0.013 15.0 0.2 1.5 1 1 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_1 PF00561.20 AHV92230.1 - 0.008 15.8 0.1 0.012 15.3 0.1 1.3 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_3 PF07859.13 AHV92230.1 - 0.024 14.5 0.9 0.11 12.3 0.2 2.0 2 0 0 2 2 2 0 alpha/beta hydrolase fold Chlorophyllase PF07224.11 AHV92230.1 - 0.064 12.3 0.0 0.22 10.5 0.1 1.7 2 0 0 2 2 2 0 Chlorophyllase Glycos_transf_1 PF00534.20 AHV92231.1 - 1.3e-31 109.4 0.0 1.9e-31 108.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 AHV92231.1 - 3.5e-26 92.2 0.1 6.1e-26 91.4 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 AHV92231.1 - 2.2e-11 44.0 2.8 5.3e-11 42.8 2.8 1.6 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 AHV92231.1 - 6.2e-10 39.7 9.2 2.6e-09 37.7 7.0 2.6 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 AHV92231.1 - 1.4e-08 35.0 0.3 9.1e-08 32.4 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 AHV92231.1 - 2.3e-08 34.2 0.0 4.1e-08 33.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like EamA PF00892.20 AHV92232.1 - 2.5e-44 150.8 41.3 8.5e-23 81.0 22.4 2.1 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.16 AHV92232.1 - 0.18 11.1 14.5 1 8.6 9.3 2.2 2 0 0 2 2 2 0 Triose-phosphate Transporter family DDE_Tnp_ISL3 PF01610.17 AHV92233.1 - 5.9e-65 219.3 1.1 1.1e-64 218.4 0.3 1.7 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV92233.1 - 1.4e-11 43.6 0.1 3.6e-11 42.3 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV92233.1 - 5.4e-09 36.6 11.2 1.1e-08 35.6 11.2 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV92233.1 - 0.0056 16.7 0.2 0.016 15.3 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain SLT_L PF14718.6 AHV92233.1 - 0.016 15.3 1.5 0.016 15.3 1.5 1.8 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain NOB1_Zn_bind PF08772.11 AHV92233.1 - 0.028 14.6 0.2 2.1 8.6 0.0 2.5 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-IS66 PF13005.7 AHV92233.1 - 8.3 6.9 9.6 3.6 8.1 6.6 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Sigma70_r2 PF04542.14 AHV92234.1 - 1.1e-11 44.3 0.4 2.5e-11 43.2 0.4 1.6 1 0 0 1 1 1 1 Sigma-70 region 2 Sigma70_r4_2 PF08281.12 AHV92234.1 - 4.5e-10 39.1 0.0 7.3e-10 38.4 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 AHV92234.1 - 9.6e-06 25.0 0.0 5e-05 22.7 0.0 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_11 PF08279.12 AHV92234.1 - 0.0014 18.5 0.0 0.0029 17.5 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_23 PF13384.6 AHV92234.1 - 0.0065 16.2 0.8 0.054 13.3 0.0 2.8 3 1 0 3 3 3 1 Homeodomain-like domain FaeA PF04703.12 AHV92234.1 - 0.018 15.4 0.0 0.77 10.2 0.0 2.4 2 0 0 2 2 2 0 FaeA-like protein DUF746 PF05344.11 AHV92234.1 - 0.02 14.7 0.1 0.24 11.3 0.0 2.5 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) Sigma70_r3 PF04539.16 AHV92234.1 - 0.04 14.0 0.0 0.12 12.5 0.0 1.8 2 0 0 2 2 2 0 Sigma-70 region 3 HTH_17 PF12728.7 AHV92234.1 - 0.08 13.1 0.5 0.2 11.8 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain MerR PF00376.23 AHV92234.1 - 0.12 12.1 0.0 0.26 11.1 0.0 1.5 1 0 0 1 1 1 0 MerR family regulatory protein GerE PF00196.19 AHV92234.1 - 0.15 11.6 0.0 0.3 10.7 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family tRNA-synt_1g PF09334.11 AHV92235.1 - 8.4e-136 452.8 0.0 1e-135 452.5 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA_bind PF01588.20 AHV92235.1 - 9.5e-21 73.7 0.0 1.6e-20 73.0 0.0 1.4 1 0 0 1 1 1 1 Putative tRNA binding domain tRNA-synt_1 PF00133.22 AHV92235.1 - 2.8e-14 52.3 0.0 3.7e-09 35.4 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1e PF01406.19 AHV92235.1 - 1.3e-06 28.0 0.0 0.0074 15.7 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 AHV92235.1 - 4.9e-06 25.7 0.0 0.0021 17.1 0.0 2.7 3 0 0 3 3 3 2 tRNA synthetases class I (K) Anticodon_1 PF08264.13 AHV92235.1 - 0.00012 22.1 0.0 0.00021 21.3 0.0 1.3 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA Peptidase_M20 PF01546.28 AHV92236.1 - 6.5e-39 133.8 0.1 9.5e-39 133.2 0.1 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 AHV92236.1 - 3.3e-22 78.5 0.0 6.6e-22 77.5 0.0 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M42 PF05343.14 AHV92236.1 - 0.17 10.9 0.0 1.9 7.4 0.0 2.1 2 0 0 2 2 2 0 M42 glutamyl aminopeptidase MotA_ExbB PF01618.16 AHV92237.1 - 8.4e-31 106.4 0.1 1.5e-30 105.5 0.1 1.4 1 1 1 2 2 2 1 MotA/TolQ/ExbB proton channel family DUF2231 PF09990.9 AHV92237.1 - 0.091 13.2 0.5 1 9.8 0.1 2.1 1 1 1 2 2 2 0 Predicted membrane protein (DUF2231) GIDA PF01134.22 AHV92238.1 - 3.3e-68 230.6 1.3 3.9e-68 230.3 1.3 1.0 1 0 0 1 1 1 1 Glucose inhibited division protein A FAD_binding_2 PF00890.24 AHV92238.1 - 2.2e-08 33.6 6.0 2e-05 23.9 1.7 2.1 2 0 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.7 AHV92238.1 - 3.7e-07 29.9 5.4 4.2e-07 29.7 5.4 1.4 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 AHV92238.1 - 5.5e-06 25.8 2.0 9.9e-06 25.0 2.0 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 AHV92238.1 - 7.3e-05 22.5 2.3 0.17 11.5 0.5 2.1 2 0 0 2 2 2 2 FAD dependent oxidoreductase Thi4 PF01946.17 AHV92238.1 - 0.00011 21.6 0.7 0.00077 18.8 0.7 2.0 1 1 0 1 1 1 1 Thi4 family HI0933_like PF03486.14 AHV92238.1 - 0.00015 20.6 0.5 0.00093 18.0 0.2 1.9 2 0 0 2 2 2 1 HI0933-like protein AlaDh_PNT_C PF01262.21 AHV92238.1 - 0.00023 20.6 1.4 0.00032 20.1 1.4 1.5 1 1 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox_3 PF13738.6 AHV92238.1 - 0.0042 16.4 0.3 0.018 14.3 0.0 2.0 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 AHV92238.1 - 0.0049 17.4 0.7 0.0098 16.4 0.3 1.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 AHV92238.1 - 0.041 13.1 0.3 0.071 12.3 0.3 1.3 1 0 0 1 1 1 0 FAD binding domain SnoaL PF07366.12 AHV92238.1 - 0.092 12.5 0.0 0.16 11.8 0.0 1.3 1 0 0 1 1 1 0 SnoaL-like polyketide cyclase NAD_binding_8 PF13450.6 AHV92238.1 - 0.21 11.8 2.0 0.42 10.9 1.5 1.8 1 1 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Xan_ur_permease PF00860.20 AHV92239.1 - 9.9e-55 185.8 39.3 1.2e-54 185.5 39.3 1.1 1 0 0 1 1 1 1 Permease family DUF3927 PF13064.6 AHV92239.1 - 0.21 11.6 2.7 1.7 8.7 0.2 3.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3927) Myc_target_1 PF15179.6 AHV92239.1 - 0.32 10.9 1.6 0.7 9.8 0.0 2.2 2 0 0 2 2 2 0 Myc target protein 1 DUF3333 PF11812.8 AHV92239.1 - 3.1 8.0 5.0 0.89 9.7 0.6 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF3333) Cyclase PF04199.13 AHV92240.1 - 1.8e-15 57.4 0.0 3.1e-15 56.6 0.0 1.4 1 0 0 1 1 1 1 Putative cyclase Cupin_6 PF12852.7 AHV92240.1 - 0.047 13.4 0.1 0.11 12.2 0.1 1.5 1 1 0 1 1 1 0 Cupin OEP PF02321.18 AHV92242.1 - 1.1e-44 152.5 22.4 1.2e-23 83.9 5.5 2.1 2 0 0 2 2 2 2 Outer membrane efflux protein GCN5L1 PF06320.13 AHV92242.1 - 0.013 15.7 1.5 4.7 7.4 0.1 2.4 2 0 0 2 2 2 0 GCN5-like protein 1 (GCN5L1) Rhodanese PF00581.20 AHV92243.1 - 1.3e-21 77.1 0.0 1e-09 38.8 0.0 2.3 2 0 0 2 2 2 2 Rhodanese-like domain DUF2457 PF10446.9 AHV92243.1 - 1.7 7.7 5.2 2.3 7.3 5.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2457) AAA_2 PF07724.14 AHV92245.1 - 4.3e-29 101.8 0.4 7.6e-29 101.0 0.4 1.4 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) ClpB_D2-small PF10431.9 AHV92245.1 - 3.3e-26 91.2 0.2 6.7e-26 90.2 0.2 1.5 1 0 0 1 1 1 1 C-terminal, D2-small domain, of ClpB protein AAA_5 PF07728.14 AHV92245.1 - 2.2e-06 27.7 0.1 5.1e-06 26.5 0.0 1.7 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) FliL PF03748.14 AHV92245.1 - 0.04 14.5 0.4 0.14 12.8 0.4 2.0 1 1 0 1 1 1 0 Flagellar basal body-associated protein FliL Fe-S_biosyn PF01521.20 AHV92247.1 - 4e-21 75.3 0.0 4.5e-21 75.1 0.0 1.0 1 0 0 1 1 1 1 Iron-sulphur cluster biosynthesis GAF_2 PF13185.6 AHV92248.1 - 5.5e-10 39.7 0.1 8.6e-10 39.1 0.1 1.3 1 0 0 1 1 1 1 GAF domain GAF PF01590.26 AHV92248.1 - 1.3e-08 35.5 0.2 1.6e-08 35.2 0.2 1.2 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.6 AHV92248.1 - 0.00013 22.3 0.0 0.00028 21.3 0.0 1.5 1 1 0 1 1 1 1 GAF domain UPF0014 PF03649.13 AHV92249.1 - 1.8e-57 194.5 11.4 2e-57 194.3 11.4 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0014) FtsX PF02687.21 AHV92249.1 - 2.2 8.8 10.0 0.3 11.6 1.4 2.9 3 1 0 3 3 3 0 FtsX-like permease family rve_3 PF13683.6 AHV92250.1 - 4e-26 90.6 0.1 4.7e-26 90.3 0.1 1.1 1 0 0 1 1 1 1 Integrase core domain rve_2 PF13333.6 AHV92250.1 - 5.8e-08 32.8 0.0 7.4e-08 32.5 0.0 1.1 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AHV92250.1 - 0.003 17.8 0.0 0.0035 17.6 0.0 1.1 1 0 0 1 1 1 1 DDE domain rve PF00665.26 AHV92251.1 - 9.9e-14 51.5 0.0 3.6e-12 46.5 0.0 2.1 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 AHV92251.1 - 9.7e-12 44.8 8.6 2e-11 43.8 8.6 1.5 1 0 0 1 1 1 1 HTH-like domain Rhomboid_SP PF12595.8 AHV92251.1 - 0.0032 16.9 0.3 1 8.7 0.0 2.3 1 1 0 2 2 2 2 Rhomboid serine protease BATS PF06968.13 AHV92252.1 - 1.8e-19 69.6 0.1 5.8e-19 68.0 0.1 1.8 2 0 0 2 2 2 1 Biotin and Thiamin Synthesis associated domain Radical_SAM PF04055.21 AHV92252.1 - 2.7e-14 53.9 0.0 4.3e-14 53.2 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily ACPS PF01648.20 AHV92254.1 - 9.8e-15 54.7 0.0 1.1e-14 54.6 0.0 1.1 1 0 0 1 1 1 1 4'-phosphopantetheinyl transferase superfamily LysR_substrate PF03466.20 AHV92255.1 - 0.0011 18.4 0.1 0.0011 18.4 0.1 1.0 1 0 0 1 1 1 1 LysR substrate binding domain UPF0093 PF03653.13 AHV92256.1 - 2.2e-21 76.7 0.9 2.4e-21 76.5 0.9 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0093) GerA PF03323.13 AHV92256.1 - 0.088 11.3 0.6 0.099 11.1 0.6 1.0 1 0 0 1 1 1 0 Bacillus/Clostridium GerA spore germination protein Porin_4 PF13609.6 AHV92257.1 - 7.1e-32 111.4 10.9 9.6e-32 111.0 10.9 1.0 1 0 0 1 1 1 1 Gram-negative porin Porin_1 PF00267.21 AHV92257.1 - 0.00066 19.2 1.2 0.014 14.8 1.5 2.7 2 1 0 2 2 2 1 Gram-negative porin P-II PF00543.22 AHV92258.1 - 1.3e-43 147.7 1.0 1.5e-43 147.6 1.0 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II DUF3240 PF11582.8 AHV92258.1 - 0.0063 16.6 0.0 0.0075 16.4 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3240) DUF2344 PF10105.9 AHV92258.1 - 0.035 13.9 0.0 0.039 13.8 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2344) CdAMP_rec PF06153.11 AHV92258.1 - 0.098 12.9 0.3 0.39 10.9 0.3 1.8 1 1 0 1 1 1 0 Cyclic-di-AMP receptor Cdc6_C PF09079.11 AHV92258.1 - 0.13 12.2 0.0 0.22 11.5 0.0 1.3 1 0 0 1 1 1 0 CDC6, C terminal winged helix domain RsgA_GTPase PF03193.16 AHV92259.1 - 2.5e-47 160.9 0.0 3.1e-47 160.6 0.0 1.1 1 0 0 1 1 1 1 RsgA GTPase RsgA_N PF16745.5 AHV92259.1 - 1.2e-05 25.0 0.0 2.2e-05 24.1 0.0 1.5 1 0 0 1 1 1 1 RsgA N-terminal domain MMR_HSR1 PF01926.23 AHV92259.1 - 7.1e-05 22.9 0.0 0.00016 21.7 0.0 1.5 2 0 0 2 2 2 1 50S ribosome-binding GTPase AAA_29 PF13555.6 AHV92259.1 - 0.0016 18.1 0.0 0.0028 17.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain GTP_EFTU PF00009.27 AHV92259.1 - 0.0028 17.2 0.0 5.9 6.4 0.2 3.5 3 1 0 3 3 3 1 Elongation factor Tu GTP binding domain ABC_tran PF00005.27 AHV92259.1 - 0.0058 17.1 0.0 0.0097 16.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter Septin PF00735.18 AHV92259.1 - 0.0064 15.8 0.0 0.0095 15.2 0.0 1.1 1 0 0 1 1 1 1 Septin AAA_16 PF13191.6 AHV92259.1 - 0.0064 16.9 0.0 0.011 16.1 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain NACHT PF05729.12 AHV92259.1 - 0.0099 15.8 0.0 0.017 15.1 0.0 1.3 1 0 0 1 1 1 1 NACHT domain Roc PF08477.13 AHV92259.1 - 0.02 15.1 0.0 0.038 14.2 0.0 1.4 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase AAA_22 PF13401.6 AHV92259.1 - 0.09 13.1 0.0 0.16 12.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF87 PF01935.17 AHV92259.1 - 0.2 11.7 0.0 0.3 11.2 0.0 1.2 1 0 0 1 1 1 0 Helicase HerA, central domain FeoB_N PF02421.18 AHV92259.1 - 0.21 11.1 0.0 5.1 6.6 0.0 2.4 2 0 0 2 2 2 0 Ferrous iron transport protein B AAA_24 PF13479.6 AHV92259.1 - 0.21 11.3 0.0 0.3 10.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 AHV92259.1 - 0.22 11.1 0.0 2.4 7.7 0.0 2.1 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain HTH_18 PF12833.7 AHV92260.1 - 1.7e-22 79.5 0.3 3.4e-22 78.5 0.3 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 AHV92260.1 - 9.8e-18 63.8 0.0 1.2e-08 34.8 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_Tnp_ISL3 PF13542.6 AHV92260.1 - 0.0099 15.3 0.6 0.13 11.7 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 Mig-14 PF07395.11 AHV92260.1 - 0.01 15.2 0.1 0.051 12.9 0.1 2.0 1 1 0 1 1 1 0 Mig-14 HTH_23 PF13384.6 AHV92260.1 - 0.012 15.4 0.4 0.12 12.2 0.0 2.4 2 0 0 2 2 2 0 Homeodomain-like domain HTH_7 PF02796.15 AHV92260.1 - 0.023 14.8 0.0 0.15 12.2 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase HTH_29 PF13551.6 AHV92260.1 - 0.048 13.7 0.2 16 5.6 0.0 2.7 2 0 0 2 2 2 0 Winged helix-turn helix HTH_28 PF13518.6 AHV92260.1 - 0.24 11.5 2.0 9.8 6.4 0.1 2.9 3 0 0 3 3 3 0 Helix-turn-helix domain Rubredoxin PF00301.20 AHV92261.1 - 0.17 11.9 0.8 16 5.6 0.2 2.4 2 0 0 2 2 2 0 Rubredoxin Voltage_CLC PF00654.20 AHV92262.1 - 3.2e-71 240.4 37.6 3.7e-71 240.2 37.6 1.0 1 0 0 1 1 1 1 Voltage gated chloride channel DUF4377 PF14302.6 AHV92263.1 - 7.3e-23 80.4 0.0 1e-22 80.0 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4377) META PF03724.16 AHV92263.1 - 2.7e-16 59.5 0.0 4.7e-16 58.7 0.0 1.4 1 0 0 1 1 1 1 META domain adh_short_C2 PF13561.6 AHV92264.1 - 7.5e-64 215.5 0.7 8.6e-64 215.3 0.7 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 AHV92264.1 - 9.9e-46 155.7 0.0 1.2e-45 155.4 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 AHV92264.1 - 1.3e-07 31.7 0.7 0.001 19.0 0.0 2.1 2 0 0 2 2 2 2 KR domain Epimerase PF01370.21 AHV92264.1 - 1.3e-06 28.1 0.2 5.1e-06 26.1 0.2 1.9 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family DFP PF04127.15 AHV92264.1 - 4.6e-05 23.3 1.3 7.8e-05 22.6 1.3 1.3 1 0 0 1 1 1 1 DNA / pantothenate metabolism flavoprotein RmlD_sub_bind PF04321.17 AHV92264.1 - 0.00027 20.2 0.3 0.00043 19.5 0.2 1.4 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.6 AHV92264.1 - 0.00084 19.3 0.2 0.0011 18.9 0.2 1.2 1 0 0 1 1 1 1 NAD(P)H-binding 3Beta_HSD PF01073.19 AHV92264.1 - 0.004 16.2 0.0 0.0051 15.9 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 AHV92264.1 - 0.039 13.1 0.6 0.087 11.9 0.6 1.7 1 1 0 1 1 1 0 Polysaccharide biosynthesis protein 2-Hacid_dh_C PF02826.19 AHV92264.1 - 0.093 12.1 0.3 0.2 11.0 0.3 1.7 1 1 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GatB_N PF02934.15 AHV92265.1 - 6.1e-109 363.6 0.0 7.7e-109 363.3 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 AHV92265.1 - 1.9e-50 170.6 0.3 2.6e-50 170.1 0.3 1.2 1 0 0 1 1 1 1 GatB domain Phage_TAC_11 PF11836.8 AHV92265.1 - 0.064 13.4 0.6 1.2 9.3 0.2 2.8 2 0 0 2 2 2 0 Phage tail tube protein, GTA-gp10 RraA-like PF03737.15 AHV92266.1 - 1.6e-31 109.5 0.8 3.2e-31 108.5 0.3 1.6 2 0 0 2 2 2 1 Aldolase/RraA ATP-cone PF03477.16 AHV92267.1 - 1.9e-15 57.2 0.0 2.7e-15 56.7 0.0 1.3 1 0 0 1 1 1 1 ATP cone domain DDE_Tnp_ISL3 PF01610.17 AHV92268.1 - 7.9e-65 218.9 1.2 1.1e-64 218.4 0.3 1.6 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV92268.1 - 1.4e-11 43.6 0.1 3.6e-11 42.3 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV92268.1 - 5.3e-09 36.6 11.2 1.1e-08 35.6 11.2 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV92268.1 - 0.0056 16.7 0.2 0.016 15.3 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain SLT_L PF14718.6 AHV92268.1 - 0.016 15.3 1.5 0.016 15.3 1.5 1.8 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain NOB1_Zn_bind PF08772.11 AHV92268.1 - 0.017 15.2 0.2 1.2 9.3 0.0 2.5 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-IS66 PF13005.7 AHV92268.1 - 8.2 6.9 9.6 3.6 8.1 6.6 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 ABC_tran PF00005.27 AHV92269.1 - 6.7e-33 114.1 8.5 0.0011 19.5 0.0 8.8 8 2 0 8 8 7 7 ABC transporter UvrA_inter PF17760.1 AHV92269.1 - 1.3e-28 99.3 0.0 2.3e-20 72.7 0.0 2.5 2 0 0 2 2 2 2 UvrA interaction domain AAA_16 PF13191.6 AHV92269.1 - 2.6e-18 67.0 1.8 0.0018 18.7 0.1 5.8 5 0 0 5 5 5 4 AAA ATPase domain AAA_21 PF13304.6 AHV92269.1 - 1.5e-17 64.4 12.0 0.00031 20.7 0.0 7.8 8 0 0 8 8 8 3 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 AHV92269.1 - 2.2e-17 63.2 0.0 0.039 13.4 0.0 7.9 7 1 0 7 7 7 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 AHV92269.1 - 9.3e-17 60.5 1.5 0.0048 16.6 0.0 4.6 4 0 0 4 4 4 4 P-loop containing region of AAA domain AAA_22 PF13401.6 AHV92269.1 - 1.1e-12 48.4 0.7 0.041 14.2 0.0 5.3 5 0 0 5 5 4 3 AAA domain UvrA_DNA-bind PF17755.1 AHV92269.1 - 4e-12 46.4 0.0 1.6e-10 41.3 0.0 2.8 2 0 0 2 2 2 1 UvrA DNA-binding domain AAA_18 PF13238.6 AHV92269.1 - 2.3e-11 44.4 0.1 0.2 12.2 0.0 5.0 4 0 0 4 4 4 3 AAA domain RsgA_GTPase PF03193.16 AHV92269.1 - 2.9e-11 43.5 0.7 0.25 11.2 0.0 4.4 4 0 0 4 4 4 4 RsgA GTPase Viral_helicase1 PF01443.18 AHV92269.1 - 7.5e-11 42.2 0.2 0.044 13.5 0.0 4.3 4 0 0 4 4 4 2 Viral (Superfamily 1) RNA helicase AAA_33 PF13671.6 AHV92269.1 - 1.1e-10 41.8 1.3 0.13 12.4 0.1 5.3 5 0 0 5 5 4 2 AAA domain AAA_23 PF13476.6 AHV92269.1 - 1.6e-10 41.8 1.6 0.05 14.1 0.0 4.2 4 0 0 4 4 4 2 AAA domain NACHT PF05729.12 AHV92269.1 - 3.5e-10 40.0 0.2 0.11 12.5 0.0 4.4 4 0 0 4 4 4 2 NACHT domain AAA_25 PF13481.6 AHV92269.1 - 8.2e-10 38.6 0.2 0.27 10.8 0.0 4.9 4 0 0 4 4 4 1 AAA domain ATPase PF06745.13 AHV92269.1 - 3.8e-09 36.3 0.8 0.64 9.3 0.0 4.3 4 0 0 4 4 4 3 KaiC AAA_15 PF13175.6 AHV92269.1 - 2.6e-08 34.0 0.0 1.3 8.6 0.0 6.2 7 0 0 7 7 6 1 AAA ATPase domain DUF2075 PF09848.9 AHV92269.1 - 9.9e-08 31.6 1.1 0.84 8.8 0.0 4.2 4 0 0 4 4 4 2 Uncharacterized conserved protein (DUF2075) APS_kinase PF01583.20 AHV92269.1 - 1.6e-07 31.4 1.3 4 7.3 0.0 4.6 4 0 0 4 4 4 0 Adenylylsulphate kinase AAA_14 PF13173.6 AHV92269.1 - 1.3e-06 28.5 0.4 8.4 6.4 0.0 4.5 4 0 0 4 4 4 0 AAA domain AAA_28 PF13521.6 AHV92269.1 - 1.4e-06 28.7 1.2 26 5.0 0.0 5.6 4 1 1 5 5 5 0 AAA domain DnaJ_CXXCXGXG PF00684.19 AHV92269.1 - 2.1e-06 28.0 21.0 0.021 15.2 0.4 6.2 5 1 0 5 5 5 2 DnaJ central domain cobW PF02492.19 AHV92269.1 - 3.9e-06 26.6 4.4 1.7 8.2 0.1 4.3 4 0 0 4 4 4 1 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 AHV92269.1 - 4.8e-06 26.4 4.3 7.8 6.2 0.1 5.8 6 0 0 6 6 6 0 AAA domain AAA_24 PF13479.6 AHV92269.1 - 8.3e-06 25.7 0.1 5.7 6.6 0.0 4.4 4 0 0 4 4 4 0 AAA domain NB-ARC PF00931.22 AHV92269.1 - 2.8e-05 23.5 0.3 3.6 6.7 0.0 4.3 4 0 0 4 4 4 0 NB-ARC domain RNA_helicase PF00910.22 AHV92269.1 - 4.8e-05 23.7 0.1 9.4 6.7 0.0 4.4 4 0 0 4 4 4 0 RNA helicase SbcCD_C PF13558.6 AHV92269.1 - 5.5e-05 23.3 0.0 3.8 7.8 0.0 4.3 4 0 0 4 4 4 0 Putative exonuclease SbcCD, C subunit ATPase_2 PF01637.18 AHV92269.1 - 0.00012 22.1 0.1 6.8 6.5 0.0 4.1 4 0 0 4 4 4 0 ATPase domain predominantly from Archaea CobU PF02283.16 AHV92269.1 - 0.00018 21.1 0.5 1.3 8.6 0.0 4.0 4 0 0 4 4 4 1 Cobinamide kinase / cobinamide phosphate guanyltransferase T2SSE PF00437.20 AHV92269.1 - 0.00029 20.0 1.7 15 4.5 0.0 4.3 4 0 0 4 4 4 0 Type II/IV secretion system protein NTPase_1 PF03266.15 AHV92269.1 - 0.00044 20.2 4.1 2.2 8.2 0.0 4.3 4 0 0 4 4 4 1 NTPase AAA_7 PF12775.7 AHV92269.1 - 0.00047 19.7 0.3 24 4.4 0.0 4.1 4 0 0 4 4 4 0 P-loop containing dynein motor region MeaB PF03308.16 AHV92269.1 - 0.00056 19.0 3.4 1.7 7.6 0.0 4.5 5 0 0 5 5 4 1 Methylmalonyl Co-A mutase-associated GTPase MeaB Sigma54_activat PF00158.26 AHV92269.1 - 0.00069 19.4 0.1 15 5.2 0.0 4.2 4 0 0 4 4 4 0 Sigma-54 interaction domain AAA_5 PF07728.14 AHV92269.1 - 0.0089 16.0 0.2 35 4.4 0.0 4.5 5 0 0 5 5 4 0 AAA domain (dynein-related subfamily) CPT PF07931.12 AHV92269.1 - 0.015 15.2 1.4 37 4.1 0.0 4.3 4 0 0 4 4 4 0 Chloramphenicol phosphotransferase-like protein PhoH PF02562.16 AHV92269.1 - 0.018 14.5 0.3 35 3.7 0.0 4.1 5 0 0 5 5 4 0 PhoH-like protein RNA12 PF10443.9 AHV92269.1 - 0.019 13.7 1.2 2.6 6.7 0.0 3.5 4 0 0 4 4 4 0 RNA12 protein PRK PF00485.18 AHV92269.1 - 0.02 14.7 2.3 38 3.9 0.1 4.1 4 0 0 4 4 4 0 Phosphoribulokinase / Uridine kinase family IstB_IS21 PF01695.17 AHV92269.1 - 0.029 14.1 2.2 28 4.4 0.0 4.7 5 0 0 5 5 5 0 IstB-like ATP binding protein MMR_HSR1 PF01926.23 AHV92269.1 - 0.039 14.0 1.3 75 3.5 0.0 4.5 4 0 0 4 4 4 0 50S ribosome-binding GTPase BCA_ABC_TP_C PF12399.8 AHV92269.1 - 0.1 12.5 0.0 52 3.9 0.0 4.1 4 0 0 4 4 3 0 Branched-chain amino acid ATP-binding cassette transporter FtsK_SpoIIIE PF01580.18 AHV92269.1 - 0.11 11.8 5.3 7.6 5.8 0.0 4.4 5 0 0 5 5 4 0 FtsK/SpoIIIE family AAA_17 PF13207.6 AHV92269.1 - 0.19 12.1 3.8 42 4.6 0.0 4.3 4 0 0 4 4 4 0 AAA domain dNK PF01712.19 AHV92269.1 - 0.3 10.9 0.6 62 3.4 0.0 3.5 4 0 0 4 4 4 0 Deoxynucleoside kinase Anti-TRAP PF15777.5 AHV92269.1 - 0.38 10.8 19.1 0.33 11.0 0.4 5.6 5 1 1 6 6 4 0 Tryptophan RNA-binding attenuator protein inhibitory protein DAP3 PF10236.9 AHV92269.1 - 0.76 8.9 2.5 60 2.7 0.0 3.6 4 0 0 4 4 4 0 Mitochondrial ribosomal death-associated protein 3 KTI12 PF08433.10 AHV92269.1 - 1.2 8.5 2.6 78 2.6 0.0 3.6 4 0 0 4 4 4 0 Chromatin associated protein KTI12 CbiA PF01656.23 AHV92269.1 - 1.4 9.0 5.2 55 3.8 0.0 4.3 4 0 0 4 4 4 0 CobQ/CobB/MinD/ParA nucleotide binding domain ATP_bind_1 PF03029.17 AHV92269.1 - 3.9 7.2 7.6 12 5.5 0.0 3.8 4 0 0 4 4 4 0 Conserved hypothetical ATP binding protein ATP_bind_2 PF03668.15 AHV92269.1 - 4.4 6.5 5.5 87 2.3 0.0 3.7 4 0 0 4 4 4 0 P-loop ATPase protein family Acyl-CoA_dh_1 PF00441.24 AHV92270.1 - 1.8e-47 161.3 6.2 2.7e-47 160.7 6.2 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 AHV92270.1 - 2.9e-26 91.5 0.0 6.5e-26 90.4 0.0 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 AHV92270.1 - 9.4e-25 87.4 3.1 9.4e-25 87.4 3.1 2.2 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 AHV92270.1 - 8.9e-23 81.1 0.3 3.2e-22 79.3 0.1 2.0 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Glycos_transf_1 PF00534.20 AHV92271.1 - 1.5e-19 70.2 0.0 2.2e-19 69.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 AHV92271.1 - 4.4e-19 69.2 0.0 7.6e-19 68.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 AHV92271.1 - 2.8e-14 53.5 5.8 6.2e-14 52.4 5.8 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 AHV92271.1 - 8.3e-05 22.9 0.0 0.00019 21.7 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 GATase PF00117.28 AHV92272.1 - 1.2e-16 61.0 0.0 1.4e-16 60.8 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I SNO PF01174.19 AHV92272.1 - 9.7e-07 28.8 0.0 0.0023 17.8 0.0 2.1 2 0 0 2 2 2 2 SNO glutamine amidotransferase family GATase_3 PF07685.14 AHV92272.1 - 3.1e-06 26.9 0.0 4e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_C26 PF07722.13 AHV92272.1 - 0.0069 16.2 0.0 0.53 10.0 0.0 2.2 2 0 0 2 2 2 2 Peptidase C26 DDE_Tnp_ISL3 PF01610.17 AHV92273.1 - 7.9e-65 218.9 1.2 1.1e-64 218.4 0.3 1.6 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV92273.1 - 1.4e-11 43.6 0.1 3.6e-11 42.3 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV92273.1 - 5.3e-09 36.6 11.2 1.1e-08 35.6 11.2 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV92273.1 - 0.0056 16.7 0.2 0.016 15.3 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain SLT_L PF14718.6 AHV92273.1 - 0.016 15.3 1.5 0.016 15.3 1.5 1.8 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain NOB1_Zn_bind PF08772.11 AHV92273.1 - 0.017 15.2 0.2 1.2 9.3 0.0 2.5 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-IS66 PF13005.7 AHV92273.1 - 8.2 6.9 9.6 3.6 8.1 6.6 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Aminotran_1_2 PF00155.21 AHV92275.1 - 3.5e-22 79.1 0.0 4.6e-22 78.7 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II GntR PF00392.21 AHV92275.1 - 2.3e-16 59.2 0.1 4.9e-16 58.1 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_28 PF13518.6 AHV92275.1 - 0.002 18.2 0.4 0.012 15.7 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_36 PF13730.6 AHV92275.1 - 0.011 15.6 0.0 0.025 14.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.6 AHV92275.1 - 0.012 15.2 0.0 0.024 14.2 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 AHV92275.1 - 0.013 15.4 1.2 0.07 13.0 0.1 2.6 2 1 0 2 2 2 0 MarR family HTH_Crp_2 PF13545.6 AHV92275.1 - 0.015 15.2 0.0 0.16 12.0 0.0 2.4 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain Aminotran_MocR PF12897.7 AHV92275.1 - 0.037 12.8 0.0 0.056 12.2 0.0 1.2 1 0 0 1 1 1 0 Alanine-glyoxylate amino-transferase HTH_23 PF13384.6 AHV92275.1 - 0.051 13.4 0.0 0.051 13.4 0.0 2.7 4 0 0 4 4 4 0 Homeodomain-like domain rve PF00665.26 AHV92276.1 - 2.9e-32 111.3 0.7 4.3e-32 110.8 0.1 1.6 2 0 0 2 2 1 1 Integrase core domain LZ_Tnp_IS481 PF13011.6 AHV92276.1 - 7.7e-22 77.6 2.7 1.1e-19 70.7 0.4 2.6 1 1 1 2 2 2 1 leucine-zipper of insertion element IS481 rve_3 PF13683.6 AHV92276.1 - 5e-19 67.8 2.7 1.2e-18 66.6 2.7 1.7 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.6 AHV92276.1 - 6.1e-17 60.9 4.4 1.2e-07 31.3 0.1 2.7 2 0 0 2 2 2 2 Homeodomain-like domain HTH_28 PF13518.6 AHV92276.1 - 1.5e-15 57.1 6.5 5.9e-11 42.3 0.1 3.4 4 0 0 4 4 3 2 Helix-turn-helix domain HTH_29 PF13551.6 AHV92276.1 - 9.8e-12 44.7 0.6 2.6e-06 27.4 0.0 2.6 2 0 0 2 2 2 2 Winged helix-turn helix HTH_32 PF13565.6 AHV92276.1 - 9.4e-11 42.2 0.7 9.4e-11 42.2 0.7 2.4 2 1 0 2 2 2 1 Homeodomain-like domain HTH_38 PF13936.6 AHV92276.1 - 1.5e-06 27.9 0.6 5.1e-06 26.1 0.5 2.1 2 0 0 2 2 1 1 Helix-turn-helix domain MarR_2 PF12802.7 AHV92276.1 - 8e-06 25.6 3.1 9.5e-05 22.2 1.2 2.6 2 0 0 2 2 2 1 MarR family HTH_31 PF13560.6 AHV92276.1 - 1.4e-05 25.4 1.7 0.00059 20.1 0.4 3.2 3 0 0 3 3 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 AHV92276.1 - 3e-05 23.6 0.1 0.0064 16.1 0.3 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 AHV92276.1 - 4.6e-05 22.9 0.1 0.00056 19.4 0.2 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 YdaS_antitoxin PF15943.5 AHV92276.1 - 0.00022 21.0 0.2 0.24 11.3 0.0 2.8 2 0 0 2 2 2 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_Tnp_ISL3 PF13542.6 AHV92276.1 - 0.00023 20.5 8.5 0.002 17.5 0.6 3.9 4 0 0 4 4 3 1 Helix-turn-helix domain of transposase family ISL3 HTH_24 PF13412.6 AHV92276.1 - 0.00028 20.4 0.2 0.0021 17.6 0.3 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_3 PF01381.22 AHV92276.1 - 0.00032 20.7 0.7 0.013 15.5 0.3 2.5 2 0 0 2 2 2 1 Helix-turn-helix HTH_Crp_2 PF13545.6 AHV92276.1 - 0.0004 20.3 0.3 0.0027 17.6 0.2 2.3 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain Trp_repressor PF01371.19 AHV92276.1 - 0.00081 19.5 0.2 0.006 16.7 0.1 2.2 2 0 0 2 2 2 1 Trp repressor protein CENP-B_N PF04218.13 AHV92276.1 - 0.0016 18.0 0.0 1.6 8.5 0.1 2.3 2 0 0 2 2 2 1 CENP-B N-terminal DNA-binding domain LacI PF00356.21 AHV92276.1 - 0.0017 18.1 1.8 0.0046 16.7 0.7 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family Fe_dep_repress PF01325.19 AHV92276.1 - 0.002 18.3 0.0 0.034 14.4 0.1 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.20 AHV92276.1 - 0.0023 17.8 0.0 0.93 9.4 0.0 2.5 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 AHV92276.1 - 0.0025 17.6 1.3 0.035 13.9 0.7 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_psq PF05225.16 AHV92276.1 - 0.0025 17.5 0.7 2.3 8.0 0.4 2.9 3 0 0 3 3 3 1 helix-turn-helix, Psq domain HTH_11 PF08279.12 AHV92276.1 - 0.0026 17.7 0.4 0.015 15.3 0.5 2.2 2 0 0 2 2 2 1 HTH domain SpoIIID PF12116.8 AHV92276.1 - 0.0026 17.8 0.0 1.1 9.4 0.0 2.4 2 0 0 2 2 2 1 Stage III sporulation protein D HTH_AsnC-type PF13404.6 AHV92276.1 - 0.0036 17.1 2.7 0.045 13.6 1.1 2.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain RepB PF07506.11 AHV92276.1 - 0.0042 17.2 0.1 0.55 10.3 0.1 2.3 1 1 1 2 2 2 1 RepB plasmid partitioning protein HTH_17 PF12728.7 AHV92276.1 - 0.0043 17.2 0.7 6.1 7.1 0.0 3.3 3 1 0 3 3 3 0 Helix-turn-helix domain HTH_Tnp_1 PF01527.20 AHV92276.1 - 0.005 17.1 0.5 0.11 12.8 0.0 2.7 1 1 1 2 2 2 1 Transposase GntR PF00392.21 AHV92276.1 - 0.0053 16.4 0.8 0.5 10.1 0.3 2.5 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_10 PF04967.12 AHV92276.1 - 0.0077 16.0 0.1 0.049 13.4 0.2 2.2 2 0 0 2 2 2 1 HTH DNA binding domain HTH_35 PF13693.6 AHV92276.1 - 0.0093 16.0 1.5 0.073 13.1 0.6 2.7 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding UPF0175 PF03683.13 AHV92276.1 - 0.014 15.1 0.4 0.1 12.3 0.1 2.4 2 1 0 2 2 2 0 Uncharacterised protein family (UPF0175) HTH_30 PF13556.6 AHV92276.1 - 0.015 15.1 0.1 2 8.3 0.0 2.6 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain HTH_37 PF13744.6 AHV92276.1 - 0.016 15.2 0.1 0.13 12.3 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Tnp_4 PF13613.6 AHV92276.1 - 0.016 14.9 0.1 0.067 12.9 0.0 2.0 2 0 0 2 2 1 0 Helix-turn-helix of DDE superfamily endonuclease HTH_36 PF13730.6 AHV92276.1 - 0.02 14.8 0.1 0.58 10.2 0.0 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain KORA PF16509.5 AHV92276.1 - 0.034 14.4 0.1 3.6 8.0 0.0 3.0 3 0 0 3 3 3 0 TrfB plasmid transcriptional repressor MarR PF01047.22 AHV92276.1 - 0.045 13.7 0.1 0.14 12.1 0.1 1.8 2 0 0 2 2 1 0 MarR family DDE_Tnp_IS240 PF13610.6 AHV92276.1 - 0.048 13.9 0.1 0.071 13.3 0.1 1.3 1 0 0 1 1 1 0 DDE domain Crp PF00325.20 AHV92276.1 - 0.05 13.3 3.2 0.062 13.0 0.5 2.5 3 0 0 3 3 3 0 Bacterial regulatory proteins, crp family P22_Cro PF14549.6 AHV92276.1 - 0.051 13.4 1.6 9.6 6.1 0.1 2.5 2 0 0 2 2 2 0 DNA-binding transcriptional regulator Cro DUF746 PF05344.11 AHV92276.1 - 0.085 12.7 0.1 0.98 9.3 0.0 2.3 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) HTH_1 PF00126.27 AHV92276.1 - 0.1 12.5 2.8 4.7 7.2 0.5 2.6 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_26 PF13443.6 AHV92276.1 - 0.17 12.3 0.0 3.6 8.1 0.1 2.8 3 0 0 3 3 3 0 Cro/C1-type HTH DNA-binding domain HTH_8 PF02954.19 AHV92276.1 - 0.19 11.5 0.9 14 5.5 0.7 2.7 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family HTH_Tnp_Tc3_2 PF01498.18 AHV92276.1 - 0.27 11.5 2.6 0.47 10.7 0.1 2.6 3 0 0 3 3 1 0 Transposase HTH_33 PF13592.6 AHV92276.1 - 0.56 9.9 3.1 2.9 7.6 0.1 3.4 4 0 0 4 4 2 0 Winged helix-turn helix MerR PF00376.23 AHV92276.1 - 0.72 9.7 6.8 3.2 7.6 0.0 3.6 4 0 0 4 4 2 0 MerR family regulatory protein TctC PF03401.14 AHV92277.1 - 8e-66 221.9 0.0 1.1e-65 221.5 0.0 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor ABC_tran PF00005.27 AHV92278.1 - 1.8e-23 83.6 0.0 2.5e-23 83.1 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 AHV92278.1 - 7.8e-07 29.2 0.1 9.5e-06 25.6 0.1 2.0 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 AHV92278.1 - 2.3e-05 24.7 0.3 0.00019 21.7 0.3 2.0 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 AHV92278.1 - 0.00019 20.9 0.0 0.0043 16.5 0.0 2.0 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 AHV92278.1 - 0.00022 21.7 0.9 0.00056 20.3 0.9 1.6 1 1 0 1 1 1 1 AAA ATPase domain ATPase PF06745.13 AHV92278.1 - 0.0017 17.8 0.1 0.53 9.6 0.0 2.1 2 0 0 2 2 2 2 KaiC NACHT PF05729.12 AHV92278.1 - 0.0022 18.0 0.1 0.12 12.3 0.0 2.2 2 0 0 2 2 2 1 NACHT domain AAA_30 PF13604.6 AHV92278.1 - 0.011 15.5 0.6 0.12 12.1 0.6 2.0 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 AHV92278.1 - 0.014 15.6 0.2 0.2 11.9 0.2 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.6 AHV92278.1 - 0.048 13.2 0.1 1.5 8.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.15 AHV92278.1 - 0.061 13.2 0.0 2.5 8.0 0.0 2.2 2 0 0 2 2 2 0 NTPase RsgA_GTPase PF03193.16 AHV92278.1 - 0.071 13.0 0.0 0.15 11.9 0.0 1.5 2 0 0 2 2 2 0 RsgA GTPase FliT PF05400.13 AHV92278.1 - 0.091 13.6 1.6 0.091 13.6 1.6 2.0 3 0 0 3 3 1 0 Flagellar protein FliT IstB_IS21 PF01695.17 AHV92278.1 - 0.12 12.1 0.1 1.1 8.9 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein TniB PF05621.11 AHV92278.1 - 0.13 11.7 0.0 6.6 6.1 0.0 2.1 2 0 0 2 2 2 0 Bacterial TniB protein AAA_24 PF13479.6 AHV92278.1 - 0.15 11.8 0.0 0.21 11.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 AHV92278.1 - 0.15 11.8 0.0 0.3 10.9 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain LZ_Tnp_IS481 PF13011.6 AHV92279.1 - 1.3e-22 80.1 2.6 3e-20 72.5 0.4 2.3 1 1 1 2 2 2 1 leucine-zipper of insertion element IS481 HTH_23 PF13384.6 AHV92279.1 - 1.4e-17 63.0 4.4 4.4e-08 32.7 0.1 2.4 2 0 0 2 2 2 2 Homeodomain-like domain HTH_28 PF13518.6 AHV92279.1 - 6.6e-17 61.4 2.6 2.1e-11 43.8 0.1 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_29 PF13551.6 AHV92279.1 - 1.7e-12 47.2 0.6 9.2e-07 28.8 0.0 2.4 2 0 0 2 2 2 2 Winged helix-turn helix HTH_32 PF13565.6 AHV92279.1 - 3e-11 43.8 0.7 3e-11 43.8 0.7 1.7 2 0 0 2 2 1 1 Homeodomain-like domain HTH_38 PF13936.6 AHV92279.1 - 1.4e-06 27.9 2.0 3.5e-06 26.7 1.2 2.1 2 1 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 AHV92279.1 - 2.6e-06 27.2 3.6 3.9e-05 23.5 1.3 2.4 2 0 0 2 2 2 1 MarR family HTH_Tnp_ISL3 PF13542.6 AHV92279.1 - 2.7e-06 26.7 1.8 0.00081 18.7 0.6 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 Sigma70_r4_2 PF08281.12 AHV92279.1 - 6.6e-06 25.7 0.1 0.0026 17.4 0.3 2.3 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 AHV92279.1 - 1.3e-05 24.6 0.1 0.00023 20.6 0.2 2.3 2 0 0 2 2 2 1 Sigma-70, region 4 YdaS_antitoxin PF15943.5 AHV92279.1 - 5.4e-05 23.0 0.2 0.1 12.5 0.0 2.6 2 1 0 2 2 2 2 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_24 PF13412.6 AHV92279.1 - 7.3e-05 22.3 0.2 0.0009 18.8 0.3 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_3 PF01381.22 AHV92279.1 - 7.5e-05 22.7 0.7 0.0058 16.7 0.3 2.5 2 0 0 2 2 2 1 Helix-turn-helix HTH_Crp_2 PF13545.6 AHV92279.1 - 0.00013 21.8 0.9 0.0014 18.5 0.4 2.5 2 1 0 2 2 2 1 Crp-like helix-turn-helix domain Trp_repressor PF01371.19 AHV92279.1 - 0.00022 21.3 0.1 0.0024 17.9 0.1 2.0 2 0 0 2 2 2 1 Trp repressor protein LacI PF00356.21 AHV92279.1 - 0.00028 20.6 1.0 0.0018 18.0 0.6 2.3 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family CENP-B_N PF04218.13 AHV92279.1 - 0.00031 20.3 0.0 0.68 9.6 0.1 2.3 2 0 0 2 2 2 2 CENP-B N-terminal DNA-binding domain HTH_5 PF01022.20 AHV92279.1 - 0.00037 20.3 0.0 0.38 10.6 0.0 2.6 3 0 0 3 3 2 1 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.19 AHV92279.1 - 0.00042 20.4 0.0 0.013 15.7 0.0 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain SpoIIID PF12116.8 AHV92279.1 - 0.00053 20.0 0.0 0.38 10.9 0.0 2.2 2 0 0 2 2 2 1 Stage III sporulation protein D HTH_31 PF13560.6 AHV92279.1 - 0.00056 20.2 1.6 0.00056 20.2 1.6 3.3 3 2 1 4 4 2 1 Helix-turn-helix domain HTH_IclR PF09339.10 AHV92279.1 - 0.00057 19.6 1.6 0.015 15.1 0.7 2.6 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_11 PF08279.12 AHV92279.1 - 0.00061 19.7 0.5 0.0061 16.5 0.5 2.4 2 0 0 2 2 2 1 HTH domain RepB PF07506.11 AHV92279.1 - 0.00074 19.7 0.2 0.2 11.7 0.1 2.1 1 1 1 2 2 2 1 RepB plasmid partitioning protein HTH_psq PF05225.16 AHV92279.1 - 0.001 18.8 0.5 0.97 9.2 0.5 2.3 2 0 0 2 2 2 1 helix-turn-helix, Psq domain GntR PF00392.21 AHV92279.1 - 0.001 18.7 0.7 0.19 11.4 0.3 2.5 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_AsnC-type PF13404.6 AHV92279.1 - 0.0012 18.6 3.1 0.023 14.5 1.4 2.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_17 PF12728.7 AHV92279.1 - 0.0016 18.6 0.1 2.8 8.2 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Tnp_1 PF01527.20 AHV92279.1 - 0.0016 18.7 0.5 0.037 14.4 0.0 2.2 1 1 1 2 2 2 1 Transposase HTH_30 PF13556.6 AHV92279.1 - 0.0029 17.4 0.1 0.71 9.7 0.0 2.5 2 0 0 2 2 2 1 PucR C-terminal helix-turn-helix domain HTH_10 PF04967.12 AHV92279.1 - 0.003 17.3 0.1 0.021 14.6 0.2 2.1 2 0 0 2 2 2 1 HTH DNA binding domain HTH_35 PF13693.6 AHV92279.1 - 0.0032 17.5 0.8 0.026 14.5 0.5 2.1 1 1 1 2 2 2 1 Winged helix-turn-helix DNA-binding UPF0175 PF03683.13 AHV92279.1 - 0.0034 17.1 0.4 0.037 13.7 0.1 2.3 2 1 1 3 3 3 1 Uncharacterised protein family (UPF0175) HTH_37 PF13744.6 AHV92279.1 - 0.0042 17.0 0.1 0.049 13.6 0.1 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Tnp_4 PF13613.6 AHV92279.1 - 0.0064 16.2 0.1 0.029 14.1 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix of DDE superfamily endonuclease Crp PF00325.20 AHV92279.1 - 0.0084 15.7 1.5 0.028 14.1 0.5 2.3 2 0 0 2 2 2 1 Bacterial regulatory proteins, crp family HTH_36 PF13730.6 AHV92279.1 - 0.012 15.5 0.0 0.23 11.4 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain MarR PF01047.22 AHV92279.1 - 0.014 15.3 0.1 0.062 13.2 0.1 2.1 2 1 0 2 2 2 0 MarR family P22_Cro PF14549.6 AHV92279.1 - 0.017 15.0 2.0 3.9 7.4 0.1 2.3 2 0 0 2 2 2 0 DNA-binding transcriptional regulator Cro DUF746 PF05344.11 AHV92279.1 - 0.02 14.7 0.1 0.41 10.5 0.0 2.3 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) HTH_DeoR PF08220.12 AHV92279.1 - 0.023 14.4 0.1 4.2 7.2 0.0 2.5 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain HTH_1 PF00126.27 AHV92279.1 - 0.025 14.5 2.9 2 8.5 0.5 2.5 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_8 PF02954.19 AHV92279.1 - 0.049 13.4 0.9 6.3 6.7 0.8 2.5 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family Sigma54_DBD PF04552.13 AHV92279.1 - 0.074 12.8 0.1 0.12 12.0 0.1 1.3 1 0 0 1 1 1 0 Sigma-54, DNA binding domain TrmB PF01978.19 AHV92279.1 - 0.077 12.9 0.0 0.26 11.2 0.1 1.8 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_7 PF02796.15 AHV92279.1 - 0.079 13.1 0.4 0.21 11.7 0.1 1.8 2 0 0 2 2 1 0 Helix-turn-helix domain of resolvase DUF1804 PF08822.11 AHV92279.1 - 0.079 12.9 0.2 7.6 6.5 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1804) HTH_26 PF13443.6 AHV92279.1 - 0.094 13.2 0.0 1.4 9.4 0.1 2.3 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain MerR_1 PF13411.6 AHV92279.1 - 0.11 12.7 0.7 1.1 9.4 0.0 2.6 3 0 0 3 3 2 0 MerR HTH family regulatory protein KORA PF16509.5 AHV92279.1 - 0.11 12.8 0.1 1.3 9.3 0.0 2.1 2 0 0 2 2 2 0 TrfB plasmid transcriptional repressor HTH_40 PF14493.6 AHV92279.1 - 0.13 12.8 0.0 1.4 9.4 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain Glyc_hyd_38C_2 PF18230.1 AHV92279.1 - 0.17 12.0 0.0 0.48 10.6 0.0 1.7 2 0 0 2 2 1 0 Glycosyl hydrolases family 38 C-terminal sub-domain HTH_Tnp_Tc3_2 PF01498.18 AHV92279.1 - 0.18 12.1 0.1 0.18 12.1 0.1 2.5 4 0 0 4 4 2 0 Transposase HTH_33 PF13592.6 AHV92279.1 - 0.28 10.9 1.4 1.2 8.8 0.1 2.7 4 1 0 4 4 2 0 Winged helix-turn helix MerR PF00376.23 AHV92279.1 - 0.37 10.6 7.8 1.5 8.7 0.0 3.4 4 0 0 4 4 3 0 MerR family regulatory protein tRNA_m1G_MT PF01746.21 AHV92280.1 - 1.7e-55 187.7 0.0 2.1e-55 187.5 0.0 1.1 1 0 0 1 1 1 1 tRNA (Guanine-1)-methyltransferase NMT1_2 PF13379.6 AHV92281.1 - 2e-28 99.8 1.4 2.7e-28 99.4 1.4 1.1 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.11 AHV92281.1 - 2.7e-07 30.8 0.9 0.00036 20.5 0.0 2.2 2 0 0 2 2 2 2 NMT1/THI5 like SBP_bac_3 PF00497.20 AHV92281.1 - 0.00016 21.2 0.7 0.18 11.2 0.1 2.6 1 1 2 3 3 3 2 Bacterial extracellular solute-binding proteins, family 3 OpuAC PF04069.12 AHV92281.1 - 0.00036 20.2 0.1 0.032 13.8 0.1 2.3 1 1 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system Phosphonate-bd PF12974.7 AHV92281.1 - 0.0028 17.3 1.6 0.015 14.9 1.2 2.2 1 1 1 2 2 2 1 ABC transporter, phosphonate, periplasmic substrate-binding protein DDE_Tnp_ISL3 PF01610.17 AHV92282.1 - 5.4e-36 124.5 0.6 5.9e-36 124.4 0.6 1.0 1 0 0 1 1 1 1 Transposase SLT_L PF14718.6 AHV92282.1 - 0.0019 18.3 1.6 0.0041 17.2 1.6 1.5 1 0 0 1 1 1 1 Soluble lytic murein transglycosylase L domain Trans_reg_C PF00486.28 AHV92283.1 - 1.2e-16 60.5 0.0 1.7e-16 60.0 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal Response_reg PF00072.24 AHV92283.1 - 2.9e-07 30.6 0.0 4e-07 30.2 0.0 1.2 1 0 0 1 1 1 1 Response regulator receiver domain HemX PF04375.14 AHV92284.1 - 0.0024 17.2 0.9 0.0034 16.7 0.9 1.1 1 0 0 1 1 1 1 HemX, putative uroporphyrinogen-III C-methyltransferase JAKMIP_CC3 PF16034.5 AHV92284.1 - 0.011 15.6 0.3 0.016 15.2 0.3 1.2 1 0 0 1 1 1 0 JAKMIP CC3 domain DUF4164 PF13747.6 AHV92284.1 - 0.028 14.7 4.6 0.045 14.0 4.6 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4164) DUF1664 PF07889.12 AHV92284.1 - 0.085 12.9 0.8 0.12 12.4 0.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) ADIP PF11559.8 AHV92284.1 - 0.09 12.9 4.1 0.16 12.1 4.1 1.3 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding DUF4763 PF15960.5 AHV92284.1 - 0.33 10.2 5.3 0.48 9.7 5.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4763) DUF3584 PF12128.8 AHV92284.1 - 0.66 7.4 5.8 0.86 7.0 5.8 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Hexapep PF00132.24 AHV92285.1 - 3.9e-18 64.4 15.7 6.1e-07 28.9 2.4 3.6 2 1 1 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 AHV92285.1 - 1.2e-08 34.5 16.0 5.2e-06 26.1 1.5 3.5 4 0 0 4 4 4 2 Hexapeptide repeat of succinyl-transferase HTH_21 PF13276.6 AHV92286.1 - 0.049 13.8 1.6 0.055 13.6 0.3 1.7 2 0 0 2 2 2 0 HTH-like domain AhpC-TSA PF00578.21 AHV92287.1 - 6.2e-17 61.7 0.0 8.1e-17 61.3 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 AHV92287.1 - 9.6e-17 61.1 0.0 1.3e-16 60.7 0.0 1.1 1 0 0 1 1 1 1 Redoxin Thioredoxin PF00085.20 AHV92287.1 - 1.1e-08 35.0 0.0 1.9e-08 34.2 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_8 PF13905.6 AHV92287.1 - 1.7e-08 34.7 0.0 3.1e-08 33.8 0.0 1.5 1 1 0 1 1 1 1 Thioredoxin-like GSHPx PF00255.19 AHV92287.1 - 0.0017 17.9 0.0 0.0024 17.4 0.0 1.2 1 0 0 1 1 1 1 Glutathione peroxidase Thioredoxin_2 PF13098.6 AHV92287.1 - 0.041 14.3 0.0 0.057 13.9 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin-like domain SCO1-SenC PF02630.14 AHV92287.1 - 0.16 11.9 0.0 0.27 11.1 0.0 1.3 1 0 0 1 1 1 0 SCO1/SenC CMD PF02627.20 AHV92288.1 - 3.5e-19 68.6 0.4 6.1e-19 67.9 0.2 1.5 2 0 0 2 2 2 1 Carboxymuconolactone decarboxylase family ATP-cone PF03477.16 AHV92288.1 - 0.016 15.8 0.0 0.025 15.2 0.0 1.4 1 0 0 1 1 1 0 ATP cone domain TPR_10 PF13374.6 AHV92288.1 - 0.12 12.3 0.3 0.31 11.0 0.0 1.8 2 0 0 2 2 2 0 Tetratricopeptide repeat LysR_substrate PF03466.20 AHV92289.1 - 1.9e-24 86.2 5.0 2.7e-24 85.7 5.0 1.2 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 AHV92289.1 - 1.8e-05 24.6 0.0 4.1e-05 23.5 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family GSH-S_N PF02951.14 AHV92290.1 - 9.3e-38 129.0 0.0 1.1e-37 128.7 0.0 1.1 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, N-terminal domain Antiterm PF03589.13 AHV92290.1 - 0.067 13.5 0.0 0.11 12.8 0.0 1.3 1 0 0 1 1 1 0 Antitermination protein MoCF_biosynth PF00994.24 AHV92291.1 - 1.5e-28 99.3 0.0 2e-28 98.8 0.0 1.2 1 0 0 1 1 1 1 Probable molybdopterin binding domain QueH PF02677.14 AHV92292.1 - 8.9e-65 218.0 0.4 1.1e-64 217.8 0.4 1.0 1 0 0 1 1 1 1 Epoxyqueuosine reductase QueH Ribosomal_TL5_C PF14693.6 AHV92293.1 - 1e-25 89.9 0.9 1.7e-25 89.2 0.9 1.3 1 0 0 1 1 1 1 Ribosomal protein TL5, C-terminal domain Ribosomal_L25p PF01386.19 AHV92293.1 - 9.5e-25 86.9 0.0 2.1e-24 85.8 0.0 1.6 1 0 0 1 1 1 1 Ribosomal L25p family DUF1194 PF06707.11 AHV92293.1 - 0.079 12.2 0.0 0.11 11.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1194) ABC_tran PF00005.27 AHV92294.1 - 3.9e-32 111.6 0.0 6.2e-32 111.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.23 AHV92294.1 - 3.6e-15 56.4 1.1 5e-15 55.9 1.1 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region SMC_N PF02463.19 AHV92294.1 - 2.2e-05 24.0 0.1 0.00044 19.8 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain NTPase_1 PF03266.15 AHV92294.1 - 0.00011 22.2 0.2 0.029 14.3 0.2 2.2 1 1 0 1 1 1 1 NTPase AAA_16 PF13191.6 AHV92294.1 - 0.00014 22.3 0.5 0.00029 21.2 0.5 1.5 1 0 0 1 1 1 1 AAA ATPase domain G-alpha PF00503.20 AHV92294.1 - 0.0048 16.1 0.0 0.0061 15.8 0.0 1.1 1 0 0 1 1 1 1 G-protein alpha subunit AAA_21 PF13304.6 AHV92294.1 - 0.0086 15.9 0.1 0.049 13.4 0.0 1.9 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 AHV92294.1 - 0.0094 16.2 0.1 0.053 13.8 0.1 2.0 1 1 0 1 1 1 1 AAA domain DEAD PF00270.29 AHV92294.1 - 0.017 14.9 0.0 0.03 14.1 0.0 1.3 1 0 0 1 1 1 0 DEAD/DEAH box helicase AAA_33 PF13671.6 AHV92294.1 - 0.018 15.2 0.0 0.045 13.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain KAP_NTPase PF07693.14 AHV92294.1 - 0.02 14.2 0.0 0.51 9.5 0.0 2.2 2 0 0 2 2 2 0 KAP family P-loop domain AAA_15 PF13175.6 AHV92294.1 - 0.02 14.6 0.0 0.028 14.2 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.6 AHV92294.1 - 0.035 13.8 0.0 0.094 12.5 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_18 PF13238.6 AHV92294.1 - 0.043 14.4 0.0 0.096 13.2 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 AHV92294.1 - 0.051 13.3 0.0 0.079 12.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain MobB PF03205.14 AHV92294.1 - 0.084 12.8 0.1 0.2 11.6 0.1 1.8 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B RsgA_GTPase PF03193.16 AHV92294.1 - 0.13 12.2 0.0 0.29 11.0 0.0 1.6 1 0 0 1 1 1 0 RsgA GTPase NACHT PF05729.12 AHV92294.1 - 0.19 11.6 1.5 0.86 9.5 1.5 2.0 1 1 0 1 1 1 0 NACHT domain Pox_A32 PF04665.12 AHV92294.1 - 0.22 10.9 0.0 0.37 10.2 0.0 1.2 1 0 0 1 1 1 0 Poxvirus A32 protein Ada_Zn_binding PF02805.16 AHV92295.1 - 4.6e-11 42.6 0.7 6.8e-11 42.0 0.7 1.3 1 0 0 1 1 1 1 Metal binding domain of Ada HTH_18 PF12833.7 AHV92295.1 - 3.1e-10 40.2 0.1 9.9e-10 38.6 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_AraC PF00165.23 AHV92295.1 - 0.00032 20.7 0.0 0.00063 19.8 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix proteins, AraC family TetR_N PF00440.23 AHV92295.1 - 0.036 13.8 0.1 0.074 12.9 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_28 PF13518.6 AHV92295.1 - 0.04 14.1 0.3 0.04 14.1 0.3 1.9 2 1 1 3 3 3 0 Helix-turn-helix domain HTH_23 PF13384.6 AHV92295.1 - 0.047 13.5 0.0 0.074 12.9 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain Sigma70_r3 PF04539.16 AHV92295.1 - 0.068 13.3 0.0 0.11 12.7 0.0 1.3 1 0 0 1 1 1 0 Sigma-70 region 3 Radical_SAM PF04055.21 AHV92296.1 - 1.6e-11 44.9 0.2 6e-11 43.0 0.2 2.0 2 1 0 2 2 2 1 Radical SAM superfamily DUF1848 PF08902.11 AHV92296.1 - 0.029 14.1 3.1 0.55 9.9 3.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1848) DUF4917 PF16263.5 AHV92296.1 - 0.092 12.1 0.0 0.14 11.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4917) Thioredoxin PF00085.20 AHV92297.1 - 4e-05 23.6 0.0 4.8e-05 23.3 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 AHV92297.1 - 0.001 19.5 0.4 0.024 15.1 0.4 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain HyaE PF07449.11 AHV92297.1 - 0.0067 16.4 0.0 0.016 15.2 0.0 1.7 1 1 0 1 1 1 1 Hydrogenase-1 expression protein HyaE DSBA PF01323.20 AHV92297.1 - 0.05 13.4 0.0 0.067 13.0 0.0 1.2 1 0 0 1 1 1 0 DSBA-like thioredoxin domain Glyoxalase PF00903.25 AHV92298.1 - 2.2e-05 24.6 0.0 6e-05 23.2 0.0 1.6 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.7 AHV92298.1 - 0.14 12.1 0.0 0.29 11.1 0.0 1.5 2 0 0 2 2 2 0 Glyoxalase-like domain DDE_Tnp_ISL3 PF01610.17 AHV92299.1 - 7.8e-65 218.9 1.2 1.1e-64 218.4 0.3 1.6 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV92299.1 - 1.4e-11 43.6 0.1 3.6e-11 42.3 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV92299.1 - 5.3e-09 36.6 11.2 1.1e-08 35.6 11.2 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV92299.1 - 0.0056 16.7 0.2 0.016 15.3 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain SLT_L PF14718.6 AHV92299.1 - 0.016 15.3 1.5 0.016 15.3 1.5 1.8 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain NOB1_Zn_bind PF08772.11 AHV92299.1 - 0.017 15.2 0.2 1.2 9.3 0.0 2.5 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-IS66 PF13005.7 AHV92299.1 - 8.1 6.9 9.6 3.6 8.1 6.6 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 FliG_C PF01706.16 AHV92300.1 - 3e-44 149.6 9.3 6.3e-40 135.7 5.4 3.6 3 1 1 4 4 4 3 FliG C-terminal domain FliG_N PF14842.6 AHV92300.1 - 4.8e-37 126.7 8.8 3.1e-29 101.6 0.2 3.3 2 1 1 3 3 3 3 FliG N-terminal domain FliG_M PF14841.6 AHV92300.1 - 1.9e-31 108.1 4.5 7.1e-25 87.0 0.0 4.0 4 1 0 4 4 4 2 FliG middle domain MgtE_N PF03448.17 AHV92300.1 - 2e-10 41.2 11.7 0.0052 17.4 0.0 5.0 2 2 3 5 5 5 4 MgtE intracellular N domain EAP30 PF04157.16 AHV92300.1 - 0.00047 19.5 0.1 0.0012 18.1 0.1 1.8 1 1 0 1 1 1 1 EAP30/Vps36 family ORF_12_N PF18042.1 AHV92300.1 - 0.025 15.0 0.2 0.82 10.1 0.0 3.2 4 0 0 4 4 4 0 ORF 12 gene product N-terminal HrcA PF01628.21 AHV92301.1 - 8e-59 199.2 0.4 1e-58 198.9 0.4 1.1 1 0 0 1 1 1 1 HrcA protein C terminal domain HrcA_DNA-bdg PF03444.15 AHV92301.1 - 2.8e-07 30.1 0.0 7e-07 28.8 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_11 PF08279.12 AHV92301.1 - 0.00024 21.0 0.0 0.0012 18.7 0.0 2.2 2 0 0 2 2 2 1 HTH domain Rrf2 PF02082.20 AHV92301.1 - 0.003 17.9 0.0 0.0063 16.8 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_DeoR PF08220.12 AHV92301.1 - 0.0045 16.7 0.0 0.016 14.9 0.0 1.9 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain DUF883 PF05957.13 AHV92301.1 - 0.013 16.1 0.0 0.039 14.5 0.0 1.8 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF883) GntR PF00392.21 AHV92301.1 - 0.037 13.7 0.0 0.082 12.6 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family RuvB_C PF05491.13 AHV92301.1 - 0.068 13.1 0.0 0.14 12.1 0.0 1.6 1 0 0 1 1 1 0 RuvB C-terminal winged helix domain Ribosomal_S19e PF01090.19 AHV92301.1 - 0.087 12.5 0.0 0.21 11.3 0.0 1.7 1 0 0 1 1 1 0 Ribosomal protein S19e MerR PF00376.23 AHV92301.1 - 0.09 12.6 0.1 0.62 9.9 0.0 2.5 2 1 0 2 2 2 0 MerR family regulatory protein DUF4140 PF13600.6 AHV92301.1 - 0.11 12.9 2.1 3 8.4 0.9 3.0 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) Aminotran_3 PF00202.21 AHV92302.1 - 1.5e-111 373.0 0.0 1.8e-111 372.7 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Beta_elim_lyase PF01212.21 AHV92302.1 - 1.3e-06 27.9 0.0 2.5e-06 27.0 0.0 1.5 1 1 0 1 1 1 1 Beta-eliminating lyase YscJ_FliF PF01514.17 AHV92304.1 - 3.4e-77 258.5 0.0 6.5e-77 257.6 0.0 1.5 1 0 0 1 1 1 1 Secretory protein of YscJ/FliF family YscJ_FliF_C PF08345.11 AHV92304.1 - 2.8e-52 177.0 2.5 5.3e-52 176.1 2.5 1.5 1 0 0 1 1 1 1 Flagellar M-ring protein C-terminal DUF3095 PF11294.8 AHV92304.1 - 0.039 13.0 0.0 0.076 12.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3095) Homoserine_dh PF00742.19 AHV92305.1 - 1e-64 217.6 0.0 2e-64 216.6 0.0 1.5 1 0 0 1 1 1 1 Homoserine dehydrogenase NAD_binding_3 PF03447.16 AHV92305.1 - 7e-22 78.3 2.7 1.5e-21 77.2 2.7 1.6 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain ACT PF01842.25 AHV92305.1 - 4.1e-14 52.0 0.1 1.1e-13 50.7 0.1 1.8 1 0 0 1 1 1 1 ACT domain GFO_IDH_MocA PF01408.22 AHV92305.1 - 0.0019 19.0 0.2 0.0037 18.1 0.2 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold ACT_4 PF13291.6 AHV92305.1 - 0.023 15.3 0.0 0.073 13.7 0.0 1.8 1 0 0 1 1 1 0 ACT domain Peptidase_S66 PF02016.15 AHV92305.1 - 0.041 14.0 0.0 0.093 12.8 0.0 1.6 1 0 0 1 1 1 0 LD-carboxypeptidase N-terminal domain ACT_7 PF13840.6 AHV92305.1 - 0.069 12.9 0.0 0.68 9.8 0.0 2.3 2 0 0 2 2 2 0 ACT domain Bac_surface_Ag PF01103.23 AHV92306.1 - 6.4e-69 232.9 10.9 8.8e-69 232.5 10.9 1.2 1 0 0 1 1 1 1 Surface antigen POTRA PF07244.15 AHV92306.1 - 1.4e-66 221.0 11.9 6.1e-17 62.0 0.0 5.3 5 0 0 5 5 5 5 Surface antigen variable number repeat POTRA_1 PF08478.10 AHV92306.1 - 8.6e-07 29.2 2.1 0.01 16.1 0.0 4.8 5 0 0 5 5 5 1 POTRA domain, FtsQ-type POTRA_2 PF08479.11 AHV92306.1 - 1.2e-06 28.2 0.5 0.0074 16.1 0.0 5.2 6 0 0 6 6 6 1 POTRA domain, ShlB-type UvrB_inter PF17757.1 AHV92306.1 - 0.08 13.1 0.4 0.51 10.5 0.0 2.5 3 1 0 3 3 3 0 UvrB interaction domain MmgE_PrpD PF03972.14 AHV92307.1 - 1.7e-133 445.4 11.8 1.9e-133 445.3 11.8 1.0 1 0 0 1 1 1 1 MmgE/PrpD family Hexapep PF00132.24 AHV92308.1 - 3.7e-15 55.0 19.3 2.5e-09 36.5 7.3 4.3 3 1 1 4 4 4 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 AHV92308.1 - 9.5e-06 25.3 21.1 1.2e-05 25.0 5.4 4.6 3 1 1 4 4 4 2 Hexapeptide repeat of succinyl-transferase DUF4954 PF16314.5 AHV92308.1 - 0.016 13.4 0.5 0.021 13.0 0.5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4954) Fucokinase PF07959.12 AHV92308.1 - 0.037 13.0 0.0 0.08 11.9 0.0 1.6 1 1 0 1 1 1 0 L-fucokinase MCD PF05292.11 AHV92309.1 - 4.5e-99 331.2 0.0 6.4e-99 330.7 0.0 1.2 1 0 0 1 1 1 1 Malonyl-CoA decarboxylase C-terminal domain MCD_N PF17408.2 AHV92309.1 - 9.9e-14 51.2 1.7 2.4e-13 50.0 0.7 2.1 2 0 0 2 2 2 1 Malonyl-CoA decarboxylase N-terminal domain BTP PF05232.12 AHV92310.1 - 2.3e-50 168.5 12.4 5.4e-26 90.4 4.8 2.0 2 0 0 2 2 2 2 Chlorhexidine efflux transporter GidB PF02527.15 AHV92311.1 - 6.7e-51 172.2 0.0 8.6e-51 171.9 0.0 1.1 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G MTS PF05175.14 AHV92311.1 - 0.00013 21.6 0.0 0.00025 20.7 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.6 AHV92311.1 - 0.00087 19.9 0.0 0.0017 19.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.14 AHV92311.1 - 0.014 14.8 0.0 0.022 14.2 0.0 1.3 1 0 0 1 1 1 0 Tellurite resistance protein TehB Methyltransf_16 PF10294.9 AHV92311.1 - 0.027 14.2 0.0 0.039 13.7 0.0 1.3 1 0 0 1 1 1 0 Lysine methyltransferase Methyltransf_4 PF02390.17 AHV92311.1 - 0.068 12.6 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 Putative methyltransferase DUF1627 PF07789.12 AHV92311.1 - 0.16 11.6 0.1 1.8 8.2 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1627) Aminotran_4 PF01063.19 AHV92311.1 - 0.18 11.7 0.0 0.27 11.1 0.0 1.2 1 0 0 1 1 1 0 Amino-transferase class IV Beta_elim_lyase PF01212.21 AHV92312.1 - 0.0029 16.9 0.0 0.0031 16.9 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Sigma70_r4_2 PF08281.12 AHV92314.1 - 3.9e-15 55.3 0.1 6.2e-15 54.6 0.1 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 AHV92314.1 - 1.8e-09 37.0 0.0 3.4e-09 36.1 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r2 PF04542.14 AHV92314.1 - 5.5e-06 26.1 1.3 5.5e-06 26.1 1.3 1.5 2 0 0 2 2 2 1 Sigma-70 region 2 HTH_23 PF13384.6 AHV92314.1 - 1.8e-05 24.4 1.6 2.2e-05 24.1 0.1 1.9 2 0 0 2 2 2 1 Homeodomain-like domain Sigma70_ECF PF07638.11 AHV92314.1 - 0.0017 18.3 0.3 0.0046 16.9 0.3 1.7 1 1 0 1 1 1 1 ECF sigma factor HTH_11 PF08279.12 AHV92314.1 - 0.0042 17.0 0.0 0.0094 15.9 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.6 AHV92314.1 - 0.0058 16.2 0.0 0.016 14.8 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding GerE PF00196.19 AHV92314.1 - 0.025 14.1 0.0 0.054 13.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_3 PF01381.22 AHV92314.1 - 0.038 14.0 0.0 0.1 12.7 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix Terminase_5 PF06056.12 AHV92314.1 - 0.04 13.8 0.4 0.28 11.1 0.0 2.1 2 0 0 2 2 2 0 Putative ATPase subunit of terminase (gpP-like) HTH_17 PF12728.7 AHV92314.1 - 0.057 13.6 0.6 0.12 12.6 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain MerR PF00376.23 AHV92314.1 - 0.12 12.2 0.0 0.27 11.0 0.0 1.6 1 0 0 1 1 1 0 MerR family regulatory protein Aldedh PF00171.22 AHV92315.1 - 2.7e-23 82.2 0.0 3e-23 82.1 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family Mobilization_B PF17511.2 AHV92315.1 - 0.78 10.1 6.5 0.21 12.0 1.1 2.0 1 1 1 2 2 2 0 Mobilization protein B Acyl_transf_3 PF01757.22 AHV92316.1 - 6e-30 104.5 33.6 7.1e-30 104.2 33.6 1.0 1 0 0 1 1 1 1 Acyltransferase family MFS_1 PF07690.16 AHV92317.1 - 1.8e-16 60.0 22.6 2.3e-16 59.7 22.6 1.0 1 0 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.24 AHV92317.1 - 0.00083 18.3 8.8 0.001 18.0 8.8 1.2 1 0 0 1 1 1 1 Sugar (and other) transporter CMAS PF02353.20 AHV92319.1 - 4.5e-92 308.2 0.0 5.4e-92 308.0 0.0 1.0 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_25 PF13649.6 AHV92319.1 - 1.6e-11 44.8 0.0 4.2e-11 43.4 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 AHV92319.1 - 1e-08 35.7 0.0 2.9e-08 34.2 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 AHV92319.1 - 3.7e-08 33.4 0.0 6.9e-08 32.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 AHV92319.1 - 3.3e-07 31.0 0.0 6.8e-07 30.0 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 AHV92319.1 - 0.00013 21.7 0.0 0.00023 21.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 AHV92319.1 - 0.0029 17.2 0.1 0.0058 16.3 0.1 1.4 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW TehB PF03848.14 AHV92319.1 - 0.024 14.0 0.0 0.054 12.9 0.0 1.5 2 0 0 2 2 2 0 Tellurite resistance protein TehB DOT1 PF08123.13 AHV92319.1 - 0.053 13.0 0.0 0.11 12.0 0.0 1.4 2 0 0 2 2 2 0 Histone methylation protein DOT1 Cons_hypoth698 PF03601.14 AHV92320.1 - 9.2e-90 300.6 18.6 1.1e-89 300.4 18.6 1.0 1 0 0 1 1 1 1 Conserved hypothetical protein 698 BPL_LplA_LipB PF03099.19 AHV92321.1 - 2e-11 43.9 0.0 2.8e-11 43.4 0.0 1.2 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family BPL_C PF02237.17 AHV92321.1 - 4.1e-06 26.6 0.4 7.8e-06 25.7 0.4 1.5 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain Sigma70_r2 PF04542.14 AHV92321.1 - 0.023 14.4 1.5 0.051 13.4 1.5 1.5 1 0 0 1 1 1 0 Sigma-70 region 2 DUF5372 PF17342.2 AHV92321.1 - 0.13 12.7 0.6 0.28 11.6 0.6 1.5 1 0 0 1 1 1 0 Family of unknown function (DUF5372) Peripla_BP_6 PF13458.6 AHV92322.1 - 1.9e-73 248.1 13.9 2.4e-73 247.8 13.9 1.0 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 AHV92322.1 - 2.2e-28 99.3 0.0 3.8e-28 98.5 0.0 1.3 1 1 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.28 AHV92322.1 - 2.3e-13 50.0 0.0 3.1e-13 49.6 0.0 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region LppC PF04348.13 AHV92322.1 - 7.1e-06 25.1 0.2 9.1e-06 24.7 0.2 1.1 1 0 0 1 1 1 1 LppC putative lipoprotein Bmp PF02608.14 AHV92322.1 - 0.11 11.5 2.6 0.72 8.8 1.1 2.6 2 1 0 2 2 2 0 ABC transporter substrate-binding protein PnrA-like PhyH PF05721.13 AHV92323.1 - 2e-33 116.5 0.0 2.5e-33 116.1 0.0 1.1 1 0 0 1 1 1 1 Phytanoyl-CoA dioxygenase (PhyH) 2OG-FeII_Oxy_3 PF13640.6 AHV92323.1 - 0.016 16.1 0.0 0.039 14.8 0.0 1.8 1 1 0 1 1 1 0 2OG-Fe(II) oxygenase superfamily CW_binding_2 PF04122.12 AHV92323.1 - 0.033 14.9 0.0 0.37 11.5 0.0 2.3 1 1 0 1 1 1 0 Putative cell wall binding repeat 2 DUF5070 PF16802.5 AHV92323.1 - 0.07 13.1 0.0 0.2 11.6 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF5070) Peptidase_M20 PF01546.28 AHV92324.1 - 1.9e-44 151.8 0.0 2.4e-44 151.5 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 AHV92324.1 - 4.3e-25 87.7 0.0 7.2e-25 87.0 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 AHV92324.1 - 0.026 14.2 0.0 0.041 13.6 0.0 1.2 1 0 0 1 1 1 0 Peptidase family M28 TerC PF03741.16 AHV92327.1 - 6.2e-46 156.4 13.4 6.2e-46 156.4 13.4 1.7 2 0 0 2 2 2 1 Integral membrane protein TerC family Coatamer_beta_C PF07718.12 AHV92327.1 - 0.88 9.5 2.4 1.2 9.0 0.9 1.9 2 0 0 2 2 2 0 Coatomer beta C-terminal region MarC PF01914.17 AHV92327.1 - 1.2 8.5 11.5 0.023 14.1 1.5 2.5 1 1 2 3 3 3 0 MarC family integral membrane protein Phage_Coat_Gp8 PF05371.12 AHV92327.1 - 8.4 6.3 7.8 16 5.4 0.8 3.4 3 0 0 3 3 3 0 Phage major coat protein, Gp8 MTS PF05175.14 AHV92329.1 - 2.7e-18 66.1 0.1 6.8e-17 61.5 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_31 PF13847.6 AHV92329.1 - 4.1e-16 59.1 0.0 5.4e-16 58.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain PrmC_N PF17827.1 AHV92329.1 - 1.4e-14 54.4 1.2 1.4e-14 54.4 1.2 2.7 4 0 0 4 4 3 1 PrmC N-terminal domain Methyltransf_25 PF13649.6 AHV92329.1 - 1.1e-12 48.5 0.0 2.4e-12 47.4 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 AHV92329.1 - 7e-08 32.5 0.0 2.8e-07 30.5 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 AHV92329.1 - 1.3e-07 31.3 0.0 2e-07 30.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_11 PF08241.12 AHV92329.1 - 7.1e-07 29.8 0.0 1.3e-06 28.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 AHV92329.1 - 1.6e-05 24.6 0.0 2.6e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_12 PF08242.12 AHV92329.1 - 3e-05 24.7 0.0 6.2e-05 23.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_16 PF10294.9 AHV92329.1 - 4.5e-05 23.3 0.0 7.3e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 Lysine methyltransferase UPF0020 PF01170.18 AHV92329.1 - 0.0009 19.0 0.0 0.002 17.9 0.0 1.5 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_2 PF00891.18 AHV92329.1 - 0.0015 17.9 0.0 0.0026 17.1 0.0 1.3 1 0 0 1 1 1 1 O-methyltransferase domain Methyltransf_15 PF09445.10 AHV92329.1 - 0.023 14.3 0.0 0.033 13.8 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase GidB PF02527.15 AHV92329.1 - 0.03 13.6 0.0 0.049 13.0 0.0 1.2 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G Methyltransf_18 PF12847.7 AHV92329.1 - 0.076 13.0 0.0 0.12 12.4 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Ubie_methyltran PF01209.18 AHV92329.1 - 0.096 12.0 0.0 0.29 10.4 0.0 1.7 2 0 0 2 2 2 0 ubiE/COQ5 methyltransferase family Eco57I PF07669.11 AHV92329.1 - 0.15 12.5 0.0 0.27 11.8 0.0 1.3 1 0 0 1 1 1 0 Eco57I restriction-modification methylase Methyltransf_32 PF13679.6 AHV92329.1 - 0.18 11.8 0.0 0.24 11.3 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain CheR PF01739.18 AHV92329.1 - 0.19 11.2 0.1 0.41 10.1 0.1 1.5 1 0 0 1 1 1 0 CheR methyltransferase, SAM binding domain N6_Mtase PF02384.16 AHV92329.1 - 0.3 10.3 0.0 0.6 9.3 0.0 1.5 1 1 0 1 1 1 0 N-6 DNA Methylase Cupin_2 PF07883.11 AHV92330.1 - 7.2e-06 25.6 0.0 1e-05 25.1 0.0 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 AHV92330.1 - 0.012 15.5 0.1 0.027 14.4 0.0 1.6 1 1 0 2 2 2 0 AraC-like ligand binding domain Cupin_3 PF05899.12 AHV92330.1 - 0.06 13.1 0.0 0.079 12.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF861) LysR_substrate PF03466.20 AHV92331.1 - 2.9e-46 157.5 4.4 3.8e-46 157.1 4.4 1.2 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 AHV92331.1 - 3.5e-19 68.5 0.3 9.5e-19 67.1 0.3 1.8 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family rve PF00665.26 AHV92333.1 - 2.9e-32 111.3 0.7 4.3e-32 110.8 0.1 1.6 2 0 0 2 2 1 1 Integrase core domain LZ_Tnp_IS481 PF13011.6 AHV92333.1 - 7.7e-22 77.6 2.7 1.1e-19 70.7 0.4 2.6 1 1 1 2 2 2 1 leucine-zipper of insertion element IS481 rve_3 PF13683.6 AHV92333.1 - 5e-19 67.8 2.7 1.2e-18 66.6 2.7 1.7 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.6 AHV92333.1 - 6.1e-17 60.9 4.4 1.2e-07 31.3 0.1 2.7 2 0 0 2 2 2 2 Homeodomain-like domain HTH_28 PF13518.6 AHV92333.1 - 1.5e-15 57.1 6.5 5.9e-11 42.3 0.1 3.4 4 0 0 4 4 3 2 Helix-turn-helix domain HTH_29 PF13551.6 AHV92333.1 - 9.8e-12 44.7 0.6 2.6e-06 27.4 0.0 2.6 2 0 0 2 2 2 2 Winged helix-turn helix HTH_32 PF13565.6 AHV92333.1 - 9.4e-11 42.2 0.7 9.4e-11 42.2 0.7 2.4 2 1 0 2 2 2 1 Homeodomain-like domain HTH_38 PF13936.6 AHV92333.1 - 1.5e-06 27.9 0.6 5.1e-06 26.1 0.5 2.1 2 0 0 2 2 1 1 Helix-turn-helix domain MarR_2 PF12802.7 AHV92333.1 - 8e-06 25.6 3.1 9.5e-05 22.2 1.2 2.6 2 0 0 2 2 2 1 MarR family HTH_31 PF13560.6 AHV92333.1 - 1.4e-05 25.4 1.7 0.00059 20.1 0.4 3.2 3 0 0 3 3 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 AHV92333.1 - 3e-05 23.6 0.1 0.0064 16.1 0.3 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 AHV92333.1 - 4.6e-05 22.9 0.1 0.00056 19.4 0.2 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 YdaS_antitoxin PF15943.5 AHV92333.1 - 0.00022 21.0 0.2 0.24 11.3 0.0 2.8 2 0 0 2 2 2 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_Tnp_ISL3 PF13542.6 AHV92333.1 - 0.00023 20.5 8.5 0.002 17.5 0.6 3.9 4 0 0 4 4 3 1 Helix-turn-helix domain of transposase family ISL3 HTH_24 PF13412.6 AHV92333.1 - 0.00028 20.4 0.2 0.0021 17.6 0.3 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_3 PF01381.22 AHV92333.1 - 0.00032 20.7 0.7 0.013 15.5 0.3 2.5 2 0 0 2 2 2 1 Helix-turn-helix HTH_Crp_2 PF13545.6 AHV92333.1 - 0.0004 20.3 0.3 0.0027 17.6 0.2 2.3 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain Trp_repressor PF01371.19 AHV92333.1 - 0.00081 19.5 0.2 0.006 16.7 0.1 2.2 2 0 0 2 2 2 1 Trp repressor protein CENP-B_N PF04218.13 AHV92333.1 - 0.0016 18.0 0.0 1.6 8.5 0.1 2.3 2 0 0 2 2 2 1 CENP-B N-terminal DNA-binding domain LacI PF00356.21 AHV92333.1 - 0.0017 18.1 1.8 0.0046 16.7 0.7 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family Fe_dep_repress PF01325.19 AHV92333.1 - 0.002 18.3 0.0 0.034 14.4 0.1 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.20 AHV92333.1 - 0.0023 17.8 0.0 0.93 9.4 0.0 2.5 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 AHV92333.1 - 0.0025 17.6 1.3 0.035 13.9 0.7 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_psq PF05225.16 AHV92333.1 - 0.0025 17.5 0.7 2.3 8.0 0.4 2.9 3 0 0 3 3 3 1 helix-turn-helix, Psq domain HTH_11 PF08279.12 AHV92333.1 - 0.0026 17.7 0.4 0.015 15.3 0.5 2.2 2 0 0 2 2 2 1 HTH domain SpoIIID PF12116.8 AHV92333.1 - 0.0026 17.8 0.0 1.1 9.4 0.0 2.4 2 0 0 2 2 2 1 Stage III sporulation protein D HTH_AsnC-type PF13404.6 AHV92333.1 - 0.0036 17.1 2.7 0.045 13.6 1.1 2.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain RepB PF07506.11 AHV92333.1 - 0.0042 17.2 0.1 0.55 10.3 0.1 2.3 1 1 1 2 2 2 1 RepB plasmid partitioning protein HTH_17 PF12728.7 AHV92333.1 - 0.0043 17.2 0.7 6.1 7.1 0.0 3.3 3 1 0 3 3 3 0 Helix-turn-helix domain HTH_Tnp_1 PF01527.20 AHV92333.1 - 0.005 17.1 0.5 0.11 12.8 0.0 2.7 1 1 1 2 2 2 1 Transposase GntR PF00392.21 AHV92333.1 - 0.0053 16.4 0.8 0.5 10.1 0.3 2.5 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_10 PF04967.12 AHV92333.1 - 0.0077 16.0 0.1 0.049 13.4 0.2 2.2 2 0 0 2 2 2 1 HTH DNA binding domain HTH_35 PF13693.6 AHV92333.1 - 0.0093 16.0 1.5 0.073 13.1 0.6 2.7 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding UPF0175 PF03683.13 AHV92333.1 - 0.014 15.1 0.4 0.1 12.3 0.1 2.4 2 1 0 2 2 2 0 Uncharacterised protein family (UPF0175) HTH_30 PF13556.6 AHV92333.1 - 0.015 15.1 0.1 2 8.3 0.0 2.6 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain HTH_37 PF13744.6 AHV92333.1 - 0.016 15.2 0.1 0.13 12.3 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Tnp_4 PF13613.6 AHV92333.1 - 0.016 14.9 0.1 0.067 12.9 0.0 2.0 2 0 0 2 2 1 0 Helix-turn-helix of DDE superfamily endonuclease HTH_36 PF13730.6 AHV92333.1 - 0.02 14.8 0.1 0.58 10.2 0.0 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain KORA PF16509.5 AHV92333.1 - 0.034 14.4 0.1 3.6 8.0 0.0 3.0 3 0 0 3 3 3 0 TrfB plasmid transcriptional repressor MarR PF01047.22 AHV92333.1 - 0.045 13.7 0.1 0.14 12.1 0.1 1.8 2 0 0 2 2 1 0 MarR family DDE_Tnp_IS240 PF13610.6 AHV92333.1 - 0.048 13.9 0.1 0.071 13.3 0.1 1.3 1 0 0 1 1 1 0 DDE domain Crp PF00325.20 AHV92333.1 - 0.05 13.3 3.2 0.062 13.0 0.5 2.6 3 0 0 3 3 3 0 Bacterial regulatory proteins, crp family P22_Cro PF14549.6 AHV92333.1 - 0.051 13.4 1.6 9.6 6.1 0.1 2.5 2 0 0 2 2 2 0 DNA-binding transcriptional regulator Cro DUF746 PF05344.11 AHV92333.1 - 0.085 12.7 0.1 0.98 9.3 0.0 2.3 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) HTH_1 PF00126.27 AHV92333.1 - 0.1 12.5 2.8 4.7 7.2 0.5 2.6 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_26 PF13443.6 AHV92333.1 - 0.17 12.3 0.0 3.6 8.1 0.1 2.8 3 0 0 3 3 3 0 Cro/C1-type HTH DNA-binding domain HTH_8 PF02954.19 AHV92333.1 - 0.19 11.5 0.9 14 5.5 0.7 2.7 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family HTH_Tnp_Tc3_2 PF01498.18 AHV92333.1 - 0.27 11.5 2.6 0.47 10.7 0.1 2.6 3 0 0 3 3 1 0 Transposase HTH_33 PF13592.6 AHV92333.1 - 0.56 9.9 3.1 2.9 7.6 0.1 3.4 4 0 0 4 4 2 0 Winged helix-turn helix MerR PF00376.23 AHV92333.1 - 0.72 9.7 6.8 3.2 7.6 0.0 3.6 4 0 0 4 4 2 0 MerR family regulatory protein TctC PF03401.14 AHV92334.1 - 9e-75 251.3 1.2 1e-74 251.0 1.2 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor Phage_holin_4_2 PF04020.13 AHV92336.1 - 1.8e-32 112.1 26.4 2e-32 112.0 26.4 1.0 1 0 0 1 1 1 1 Mycobacterial 4 TMS phage holin, superfamily IV FdsD PF11390.8 AHV92337.1 - 2.7e-26 91.6 0.0 3.7e-26 91.2 0.0 1.3 1 1 0 1 1 1 1 NADH-dependant formate dehydrogenase delta subunit FdsD DXP_synthase_N PF13292.6 AHV92338.1 - 5.2e-121 403.0 0.0 6.1e-121 402.8 0.0 1.0 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase E1_dh PF00676.20 AHV92338.1 - 4.9e-05 22.4 0.4 7.3e-05 21.9 0.4 1.2 1 0 0 1 1 1 1 Dehydrogenase E1 component Transketolase_N PF00456.21 AHV92338.1 - 0.00014 21.0 0.2 0.00029 19.9 0.2 1.5 1 1 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain TPP_enzyme_C PF02775.21 AHV92338.1 - 0.0016 18.2 0.6 0.0037 17.1 0.6 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain IclR PF01614.18 AHV92339.1 - 2.1e-32 111.6 0.1 1.6e-31 108.9 0.0 2.1 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 AHV92339.1 - 4.9e-16 58.3 0.3 1.4e-15 56.8 0.3 1.8 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 AHV92339.1 - 1.6e-07 31.1 0.1 5.6e-07 29.4 0.1 2.0 1 0 0 1 1 1 1 MarR family SMC_Nse1 PF07574.13 AHV92339.1 - 0.0018 18.2 0.0 0.0034 17.3 0.0 1.5 1 0 0 1 1 1 1 Nse1 non-SMC component of SMC5-6 complex DprA_WH PF17782.1 AHV92339.1 - 0.0064 16.6 1.3 0.063 13.4 0.2 2.5 2 0 0 2 2 2 1 DprA winged helix domain HTH_24 PF13412.6 AHV92339.1 - 0.044 13.4 0.0 0.11 12.1 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 AHV92339.1 - 0.056 13.5 0.1 0.15 12.1 0.1 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma54_DBD PF04552.13 AHV92339.1 - 0.062 13.0 0.0 0.093 12.4 0.0 1.3 1 0 0 1 1 1 0 Sigma-54, DNA binding domain Rrf2 PF02082.20 AHV92339.1 - 0.08 13.3 0.0 0.2 12.0 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator DDE_Tnp_ISL3 PF01610.17 AHV92340.1 - 7.9e-65 218.9 1.2 1.1e-64 218.4 0.3 1.6 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV92340.1 - 1.4e-11 43.6 0.1 3.6e-11 42.3 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV92340.1 - 5.4e-09 36.6 11.2 1.1e-08 35.6 11.2 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV92340.1 - 0.0056 16.7 0.2 0.016 15.3 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain SLT_L PF14718.6 AHV92340.1 - 0.016 15.3 1.5 0.016 15.3 1.5 1.9 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain NOB1_Zn_bind PF08772.11 AHV92340.1 - 0.017 15.3 0.2 1.2 9.3 0.0 2.5 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-IS66 PF13005.7 AHV92340.1 - 8.4 6.9 9.6 3.6 8.1 6.6 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 GreA_GreB_N PF03449.15 AHV92341.1 - 2.1e-31 107.9 0.9 3.1e-31 107.3 0.9 1.2 1 0 0 1 1 1 1 Transcription elongation factor, N-terminal GreA_GreB PF01272.19 AHV92341.1 - 4.5e-28 97.0 0.4 6.3e-28 96.5 0.4 1.2 1 0 0 1 1 1 1 Transcription elongation factor, GreA/GreB, C-term HEM4 PF02602.15 AHV92343.1 - 8.1e-21 74.4 0.0 1e-20 74.1 0.0 1.1 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD DUF455 PF04305.14 AHV92344.1 - 2.8e-91 305.5 0.0 3e-91 305.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF455) QRPTase_C PF01729.19 AHV92345.1 - 1.8e-58 197.1 1.7 2.6e-58 196.6 1.7 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 AHV92345.1 - 9.5e-26 89.7 0.0 2.1e-25 88.6 0.0 1.6 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain NmrA PF05368.13 AHV92345.1 - 0.073 12.6 0.6 0.14 11.7 0.6 1.4 1 0 0 1 1 1 0 NmrA-like family Peripla_BP_4 PF13407.6 AHV92345.1 - 0.079 12.5 0.1 0.15 11.6 0.1 1.4 1 0 0 1 1 1 0 Periplasmic binding protein domain FliO PF04347.13 AHV92346.1 - 7.1e-19 67.9 0.2 7.1e-19 67.9 0.2 1.5 2 0 0 2 2 2 1 Flagellar biosynthesis protein, FliO GGDEF PF00990.21 AHV92347.1 - 8.7e-41 139.4 0.0 1.7e-40 138.4 0.0 1.5 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain dCache_1 PF02743.18 AHV92347.1 - 7.9e-15 55.3 0.0 2.5e-14 53.7 0.0 1.7 2 0 0 2 2 2 1 Cache domain sCache_3_2 PF17203.4 AHV92347.1 - 3.4e-07 30.5 6.1 5.8e-07 29.7 0.1 2.9 2 1 1 3 3 3 1 Single cache domain 3 GGDEF_2 PF17853.1 AHV92347.1 - 5.2e-05 23.5 7.3 0.00016 21.9 0.8 3.6 3 1 0 3 3 3 1 GGDEF-like domain Diacid_rec PF05651.13 AHV92347.1 - 0.025 14.3 0.0 0.054 13.2 0.0 1.5 1 0 0 1 1 1 0 Putative sugar diacid recognition Cytochrom_C_asm PF01578.20 AHV92348.1 - 2.8e-24 86.1 14.5 3.4e-24 85.8 13.9 1.3 1 1 0 1 1 1 1 Cytochrome C assembly protein ABC_tran PF00005.27 AHV92349.1 - 4.3e-27 95.3 0.0 6.1e-27 94.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 AHV92349.1 - 8.4e-12 45.5 0.6 6.2e-06 26.2 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 AHV92349.1 - 9.3e-06 25.2 0.6 0.00065 19.2 0.6 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 AHV92349.1 - 6.1e-05 22.7 0.1 0.00014 21.6 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.6 AHV92349.1 - 0.0014 18.8 0.3 0.014 15.6 0.3 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.6 AHV92349.1 - 0.0017 18.9 0.5 0.0026 18.3 0.5 1.2 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 AHV92349.1 - 0.0048 16.7 0.1 0.0068 16.1 0.1 1.1 1 0 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 AHV92349.1 - 0.0068 16.3 0.2 0.034 14.0 0.0 2.0 2 0 0 2 2 2 1 RsgA GTPase ABC_ATPase PF09818.9 AHV92349.1 - 0.021 13.6 0.5 0.18 10.5 0.2 2.0 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_33 PF13671.6 AHV92349.1 - 0.023 14.9 0.1 0.043 14.0 0.1 1.9 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 AHV92349.1 - 0.04 14.0 0.0 0.1 12.7 0.0 1.7 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_30 PF13604.6 AHV92349.1 - 0.14 11.9 0.3 0.36 10.5 0.1 1.7 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 AHV92349.1 - 0.15 12.4 1.6 0.71 10.2 1.6 2.1 1 1 0 1 1 1 0 AAA ATPase domain NACHT PF05729.12 AHV92349.1 - 0.18 11.7 0.1 0.32 10.9 0.1 1.4 1 0 0 1 1 1 0 NACHT domain NB-ARC PF00931.22 AHV92349.1 - 0.33 10.1 0.5 0.61 9.2 0.2 1.5 2 0 0 2 2 2 0 NB-ARC domain Polysacc_synt_2 PF02719.15 AHV92350.1 - 7.2e-120 399.6 0.0 1e-119 399.1 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein Epimerase PF01370.21 AHV92350.1 - 1.5e-14 54.0 0.0 2.3e-13 50.2 0.0 2.5 2 1 0 2 2 2 1 NAD dependent epimerase/dehydratase family CoA_binding_3 PF13727.6 AHV92350.1 - 4.2e-14 52.9 0.7 1.4e-13 51.3 0.2 2.1 2 0 0 2 2 2 1 CoA-binding domain RmlD_sub_bind PF04321.17 AHV92350.1 - 6.7e-10 38.5 0.0 1.2e-08 34.4 0.0 2.3 1 1 0 1 1 1 1 RmlD substrate binding domain GDP_Man_Dehyd PF16363.5 AHV92350.1 - 1.3e-07 31.3 0.0 2.4e-07 30.5 0.0 1.6 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 AHV92350.1 - 2.3e-05 23.5 0.0 3.8e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.12 AHV92350.1 - 0.00018 20.8 0.8 0.11 11.6 0.2 3.0 2 1 1 3 3 3 1 Male sterility protein PglD_N PF17836.1 AHV92350.1 - 0.0054 17.3 0.0 0.014 16.0 0.0 1.7 1 0 0 1 1 1 1 PglD N-terminal domain adh_short PF00106.25 AHV92350.1 - 0.013 14.9 0.0 0.038 13.4 0.0 1.8 1 0 0 1 1 1 0 short chain dehydrogenase Ldh_1_N PF00056.23 AHV92350.1 - 0.022 14.9 0.0 7.9 6.6 0.0 2.5 2 0 0 2 2 2 0 lactate/malate dehydrogenase, NAD binding domain ACR_tran PF00873.19 AHV92351.1 - 0 1162.0 20.8 0 1161.8 20.8 1.0 1 0 0 1 1 1 1 AcrB/AcrD/AcrF family MMPL PF03176.15 AHV92351.1 - 1.1e-14 54.2 38.6 3e-12 46.1 10.1 2.6 2 0 0 2 2 2 2 MMPL family SecD_SecF PF02355.16 AHV92351.1 - 1.1e-05 24.9 33.7 0.013 14.9 17.8 2.6 3 0 0 3 3 3 2 Protein export membrane protein TctC PF03401.14 AHV92352.1 - 0.12 11.4 0.0 0.16 11.0 0.0 1.1 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter family receptor Ala_racemase_N PF01168.20 AHV92353.1 - 5.1e-56 189.8 0.0 6.5e-56 189.4 0.0 1.1 1 0 0 1 1 1 1 Alanine racemase, N-terminal domain Ala_racemase_C PF00842.21 AHV92353.1 - 3.3e-40 136.8 0.4 5.8e-40 135.9 0.4 1.4 1 0 0 1 1 1 1 Alanine racemase, C-terminal domain Asp_Arg_Hydrox PF05118.15 AHV92354.1 - 4.3e-48 163.1 0.0 5.9e-48 162.6 0.0 1.2 1 0 0 1 1 1 1 Aspartyl/Asparaginyl beta-hydroxylase Cupin_2 PF07883.11 AHV92354.1 - 0.00019 21.1 0.0 0.00068 19.3 0.0 1.8 2 0 0 2 2 2 1 Cupin domain rve PF00665.26 AHV92355.1 - 7.9e-14 51.9 0.0 3.1e-12 46.7 0.0 2.1 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 AHV92355.1 - 9.1e-12 44.9 8.6 1.8e-11 44.0 8.6 1.5 1 0 0 1 1 1 1 HTH-like domain Rhomboid_SP PF12595.8 AHV92355.1 - 0.0029 17.0 0.4 0.96 8.8 0.0 2.2 1 1 1 2 2 2 2 Rhomboid serine protease Flavin_Reduct PF01613.18 AHV92356.1 - 1.2e-30 106.7 0.1 1.4e-30 106.4 0.1 1.0 1 0 0 1 1 1 1 Flavin reductase like domain DUF1974 PF09317.11 AHV92357.1 - 1.3e-31 110.2 0.1 1.4e-31 110.1 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1974) Cob_adeno_trans PF01923.18 AHV92357.1 - 0.099 12.8 0.2 0.11 12.6 0.2 1.1 1 0 0 1 1 1 0 Cobalamin adenosyltransferase FAA_hydrolase PF01557.18 AHV92358.1 - 1.7e-49 168.5 0.0 2.5e-49 167.9 0.0 1.2 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family FAA_hydrolase_N PF09298.11 AHV92358.1 - 6.4e-20 71.3 0.0 1.4e-19 70.2 0.0 1.6 1 0 0 1 1 1 1 Fumarylacetoacetase N-terminal AAA_16 PF13191.6 AHV92359.1 - 0.0016 18.8 0.4 0.0056 17.1 0.4 2.0 1 1 0 1 1 1 1 AAA ATPase domain Rhodanese PF00581.20 AHV92359.1 - 0.0025 18.3 0.0 0.0057 17.2 0.0 1.7 1 1 0 1 1 1 1 Rhodanese-like domain T2SSE PF00437.20 AHV92359.1 - 0.036 13.1 0.0 0.14 11.2 0.0 1.8 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_30 PF13604.6 AHV92359.1 - 0.042 13.6 0.0 0.12 12.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 AHV92359.1 - 0.053 13.8 0.1 0.14 12.4 0.0 1.8 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 AHV92359.1 - 0.066 13.1 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_6 PF12774.7 AHV92359.1 - 0.22 10.5 0.0 0.35 9.8 0.0 1.2 1 0 0 1 1 1 0 Hydrolytic ATP binding site of dynein motor region Mur_ligase_M PF08245.12 AHV92360.1 - 1.3e-19 70.9 0.0 2e-19 70.4 0.0 1.3 1 0 0 1 1 1 1 Mur ligase middle domain Mur_ligase_C PF02875.21 AHV92360.1 - 5.7e-13 48.9 0.0 1.4e-12 47.7 0.0 1.7 1 0 0 1 1 1 1 Mur ligase family, glutamate ligase domain RimK PF08443.11 AHV92360.1 - 3.8e-12 46.2 0.0 4.7e-05 23.1 0.0 2.7 3 0 0 3 3 3 2 RimK-like ATP-grasp domain Dala_Dala_lig_C PF07478.13 AHV92360.1 - 2.3e-05 24.0 0.0 0.00011 21.8 0.0 1.9 2 0 0 2 2 2 1 D-ala D-ala ligase C-terminus ATP-grasp PF02222.22 AHV92360.1 - 0.00025 20.6 0.0 0.00059 19.4 0.0 1.6 1 0 0 1 1 1 1 ATP-grasp domain GSH-S_ATP PF02955.16 AHV92360.1 - 0.00036 20.0 0.0 0.017 14.5 0.0 2.5 2 0 0 2 2 2 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.14 AHV92360.1 - 0.0005 20.2 0.1 0.045 13.8 0.0 2.6 2 0 0 2 2 2 1 ATP-grasp domain CPSase_L_D2 PF02786.17 AHV92360.1 - 0.0024 17.4 0.1 0.0059 16.1 0.0 1.7 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATPgrasp_ST PF14397.6 AHV92360.1 - 0.0027 17.0 0.0 0.11 11.7 0.0 2.2 2 0 0 2 2 2 1 Sugar-transfer associated ATP-grasp DUF4938 PF16292.5 AHV92360.1 - 0.0065 15.8 0.1 0.012 15.0 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4938) LpxD PF04613.14 AHV92360.1 - 0.036 13.8 0.1 0.96 9.3 0.0 2.5 2 0 0 2 2 2 0 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD DUF1175 PF06672.11 AHV92360.1 - 0.19 11.4 0.0 0.41 10.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1175) Amidohydro_2 PF04909.14 AHV92361.1 - 4.2e-19 69.4 2.0 5.4e-19 69.1 2.0 1.1 1 0 0 1 1 1 1 Amidohydrolase GGDEF PF00990.21 AHV92362.1 - 4.3e-38 130.6 0.0 5.8e-38 130.2 0.0 1.2 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain GGDEF_2 PF17853.1 AHV92362.1 - 1.8e-05 25.0 0.3 4.5e-05 23.7 0.2 1.7 1 1 0 1 1 1 1 GGDEF-like domain DUF3008 PF11450.8 AHV92363.1 - 1e-27 96.1 8.3 1.1e-27 96.0 8.3 1.0 1 0 0 1 1 1 1 Protein of unknwon function (DUF3008) Peptidase_M23 PF01551.22 AHV92364.1 - 6.2e-30 103.3 0.3 7.1e-30 103.1 0.3 1.0 1 0 0 1 1 1 1 Peptidase family M23 Biotin_lipoyl_2 PF13533.6 AHV92364.1 - 0.00018 21.3 0.1 0.0004 20.2 0.1 1.6 1 0 0 1 1 1 1 Biotin-lipoyl like RnfC_N PF13375.6 AHV92364.1 - 0.0055 16.6 0.5 0.03 14.3 0.0 2.0 2 0 0 2 2 2 1 RnfC Barrel sandwich hybrid domain Biotin_lipoyl PF00364.22 AHV92364.1 - 0.015 15.1 0.1 0.054 13.3 0.0 1.9 2 0 0 2 2 2 0 Biotin-requiring enzyme Apocytochr_F_C PF01333.19 AHV92364.1 - 0.019 15.0 0.1 0.025 14.6 0.1 1.1 1 0 0 1 1 1 0 Apocytochrome F, C-terminal PTS_EIIA_1 PF00358.20 AHV92364.1 - 0.025 14.3 0.1 0.035 13.8 0.1 1.3 1 1 0 1 1 1 0 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 Shikimate_dh_N PF08501.11 AHV92365.1 - 2.7e-21 75.6 0.0 4.6e-21 74.9 0.0 1.4 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain SDH_C PF18317.1 AHV92365.1 - 1.5e-11 43.9 0.1 4.1e-11 42.4 0.1 1.9 1 0 0 1 1 1 1 Shikimate 5'-dehydrogenase C-terminal domain Shikimate_DH PF01488.20 AHV92365.1 - 4e-09 36.7 0.0 7.9e-09 35.7 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase ThiF PF00899.21 AHV92365.1 - 0.0049 16.3 1.1 0.008 15.6 1.1 1.2 1 0 0 1 1 1 1 ThiF family F420_oxidored PF03807.17 AHV92365.1 - 0.0061 17.1 0.1 0.017 15.7 0.1 1.7 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Sacchrp_dh_NADP PF03435.18 AHV92365.1 - 0.012 15.9 0.0 0.027 14.7 0.0 1.6 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain NAD_binding_1 PF00175.21 AHV92366.1 - 8.2e-10 39.3 0.0 2.5e-09 37.8 0.0 1.7 1 1 0 1 1 1 1 Oxidoreductase NAD-binding domain FAD_binding_6 PF00970.24 AHV92366.1 - 0.00053 20.3 0.0 0.00085 19.6 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain NAD_binding_6 PF08030.12 AHV92366.1 - 0.0062 16.7 0.0 0.5 10.5 0.0 2.1 2 0 0 2 2 2 2 Ferric reductase NAD binding domain Asparaginase_2 PF01112.18 AHV92367.1 - 1.8e-114 381.9 8.3 2.2e-114 381.6 8.3 1.0 1 0 0 1 1 1 1 Asparaginase oligo_HPY PF08352.12 AHV92368.1 - 6.2e-21 74.7 0.1 9.2e-21 74.1 0.1 1.3 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 AHV92368.1 - 0.00018 21.4 0.0 0.00022 21.2 0.0 1.1 1 0 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system ABC_tran PF00005.27 AHV92368.1 - 0.057 13.9 0.1 0.093 13.2 0.1 1.3 1 0 0 1 1 1 0 ABC transporter AAA_PrkA PF08298.11 AHV92369.1 - 1.5e-65 221.4 0.0 1.7e-65 221.3 0.0 1.0 1 0 0 1 1 1 1 PrkA AAA domain AAA_16 PF13191.6 AHV92369.1 - 0.00083 19.8 0.0 0.0021 18.4 0.0 1.6 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 AHV92369.1 - 0.029 14.6 0.0 0.07 13.4 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 AHV92369.1 - 0.059 13.4 0.1 0.13 12.3 0.0 1.6 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) RuvB_N PF05496.12 AHV92369.1 - 0.076 12.8 0.0 0.1 12.3 0.0 1.2 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain Rad17 PF03215.15 AHV92369.1 - 0.11 12.5 0.0 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain Mg_chelatase PF01078.21 AHV92369.1 - 0.16 11.4 0.0 0.24 10.8 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Meth_synt_2 PF01717.18 AHV92370.1 - 5.9e-162 538.4 0.0 9.1e-157 521.4 0.0 2.7 2 1 0 2 2 2 2 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.12 AHV92370.1 - 6.5e-128 426.6 0.0 3.2e-119 398.1 0.0 2.2 2 0 0 2 2 2 2 Cobalamin-independent synthase, N-terminal domain ExbD PF02472.16 AHV92371.1 - 6.2e-26 91.1 0.8 7.4e-26 90.8 0.8 1.0 1 0 0 1 1 1 1 Biopolymer transport protein ExbD/TolR NAD_binding_10 PF13460.6 AHV92371.1 - 0.0032 17.4 0.5 0.004 17.1 0.5 1.2 1 0 0 1 1 1 1 NAD(P)H-binding Peripla_BP_4 PF13407.6 AHV92371.1 - 0.053 13.1 4.0 0.11 12.0 3.8 1.5 1 1 0 1 1 1 0 Periplasmic binding protein domain DUF1510 PF07423.11 AHV92371.1 - 0.11 12.7 0.0 0.14 12.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1510) OEP PF02321.18 AHV92373.1 - 5.7e-53 179.5 28.5 1.2e-27 97.0 21.6 2.1 2 0 0 2 2 2 2 Outer membrane efflux protein LemA PF04011.12 AHV92373.1 - 0.28 11.0 4.6 0.18 11.6 1.9 2.1 2 0 0 2 2 2 0 LemA family ABC_tran PF00005.27 AHV92374.1 - 0.0064 17.0 0.1 0.022 15.3 0.0 1.8 2 1 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 AHV92374.1 - 0.0069 16.2 0.0 0.0093 15.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system Response_reg PF00072.24 AHV92375.1 - 4.3e-25 88.1 0.0 8.9e-25 87.0 0.0 1.5 2 0 0 2 2 2 1 Response regulator receiver domain GerE PF00196.19 AHV92375.1 - 1.2e-21 76.0 0.6 3.2e-21 74.6 0.5 1.8 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 AHV92375.1 - 0.0048 16.6 0.2 0.0081 15.8 0.2 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.6 AHV92375.1 - 0.03 14.1 0.0 0.085 12.7 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain HTH_24 PF13412.6 AHV92375.1 - 0.046 13.3 0.1 0.14 11.8 0.1 1.9 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding Sigma70_r4 PF04545.16 AHV92375.1 - 0.068 12.7 0.0 0.13 11.8 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_38 PF13936.6 AHV92375.1 - 0.07 12.9 0.0 0.15 11.8 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.6 AHV92375.1 - 0.094 12.8 0.1 0.33 11.0 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn helix HTH_40 PF14493.6 AHV92375.1 - 0.13 12.7 0.1 0.25 11.8 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain SMC_ScpA PF02616.14 AHV92376.1 - 1.4e-32 113.5 3.9 1.8e-32 113.2 3.9 1.1 1 0 0 1 1 1 1 Segregation and condensation protein ScpA Rad21_Rec8 PF04824.16 AHV92376.1 - 0.00018 20.7 0.0 0.00036 19.8 0.0 1.4 1 0 0 1 1 1 1 Conserved region of Rad21 / Rec8 like protein Ser_hydrolase PF06821.13 AHV92377.1 - 1.2e-66 223.7 0.7 1.5e-66 223.5 0.7 1.0 1 0 0 1 1 1 1 Serine hydrolase Abhydrolase_6 PF12697.7 AHV92377.1 - 3e-05 24.7 9.3 0.0003 21.5 9.2 2.2 1 1 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 AHV92377.1 - 0.00029 20.2 0.3 0.0031 16.8 0.2 1.9 1 1 1 2 2 2 1 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 AHV92377.1 - 0.006 16.2 0.2 1.8 8.2 0.0 2.3 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_4 PF08386.10 AHV92377.1 - 0.021 14.9 0.0 0.13 12.4 0.0 2.0 1 1 0 2 2 2 0 TAP-like protein LCAT PF02450.15 AHV92377.1 - 0.23 10.6 0.0 0.32 10.1 0.0 1.1 1 0 0 1 1 1 0 Lecithin:cholesterol acyltransferase DDE_Tnp_ISL3 PF01610.17 AHV92378.1 - 7.9e-65 218.9 1.2 1.1e-64 218.4 0.3 1.6 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV92378.1 - 1.4e-11 43.6 0.1 3.6e-11 42.3 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV92378.1 - 5.3e-09 36.6 11.2 1.1e-08 35.6 11.2 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV92378.1 - 0.0056 16.7 0.2 0.016 15.3 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain SLT_L PF14718.6 AHV92378.1 - 0.016 15.3 1.5 0.016 15.3 1.5 1.8 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain NOB1_Zn_bind PF08772.11 AHV92378.1 - 0.017 15.2 0.2 1.2 9.3 0.0 2.5 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-IS66 PF13005.7 AHV92378.1 - 8.2 6.9 9.6 3.6 8.1 6.6 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Pyr_redox_2 PF07992.14 AHV92379.1 - 0.00089 18.6 0.0 0.001 18.4 0.0 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase PTS-HPr PF00381.19 AHV92380.1 - 8.3e-27 93.3 0.8 9.6e-27 93.1 0.8 1.0 1 0 0 1 1 1 1 PTS HPr component phosphorylation site Peptidase_M16_C PF05193.21 AHV92381.1 - 1.1e-53 182.0 0.0 6.3e-29 101.3 0.0 3.7 3 0 0 3 3 3 2 Peptidase M16 inactive domain Peptidase_M16 PF00675.20 AHV92381.1 - 8e-25 87.6 0.8 3.5e-20 72.5 0.0 2.6 3 0 0 3 3 3 2 Insulinase (Peptidase family M16) HD_assoc PF13286.6 AHV92382.1 - 9e-31 106.3 0.2 2.8e-30 104.7 0.2 1.9 1 0 0 1 1 1 1 Phosphohydrolase-associated domain HD PF01966.22 AHV92382.1 - 2.7e-14 53.4 0.7 1.2e-13 51.3 0.1 2.2 2 0 0 2 2 2 1 HD domain HDOD PF08668.12 AHV92382.1 - 0.00076 19.0 0.0 0.0017 17.9 0.0 1.5 1 0 0 1 1 1 1 HDOD domain rve PF00665.26 AHV92383.1 - 7.9e-14 51.9 0.0 3.1e-12 46.7 0.0 2.1 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 AHV92383.1 - 9.1e-12 44.9 8.6 1.8e-11 44.0 8.6 1.5 1 0 0 1 1 1 1 HTH-like domain Rhomboid_SP PF12595.8 AHV92383.1 - 0.0029 17.0 0.4 0.96 8.8 0.0 2.2 1 1 1 2 2 2 2 Rhomboid serine protease TctC PF03401.14 AHV92384.1 - 1.2e-77 260.7 0.0 1.3e-77 260.5 0.0 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor SBP_bac_3 PF00497.20 AHV92384.1 - 0.028 13.8 0.0 0.039 13.4 0.0 1.4 1 1 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 Phosphonate-bd PF12974.7 AHV92384.1 - 0.03 13.9 0.0 0.072 12.7 0.0 1.8 1 1 0 1 1 1 0 ABC transporter, phosphonate, periplasmic substrate-binding protein SBP_bac_8 PF13416.6 AHV92384.1 - 0.069 12.9 0.0 1 9.1 0.0 2.2 2 1 0 2 2 2 0 Bacterial extracellular solute-binding protein Fer2_4 PF13510.6 AHV92385.1 - 1.3e-25 89.2 0.8 1.5e-25 89.1 0.8 1.0 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain NUDIX PF00293.28 AHV92386.1 - 9.8e-10 38.6 0.1 1.3e-09 38.2 0.1 1.1 1 0 0 1 1 1 1 NUDIX domain MreD PF04093.12 AHV92387.1 - 7.2e-14 52.2 9.6 9.9e-14 51.7 9.6 1.1 1 0 0 1 1 1 1 rod shape-determining protein MreD CoA_transf_3 PF02515.17 AHV92388.1 - 1e-60 205.8 0.0 1.1e-60 205.7 0.0 1.0 1 0 0 1 1 1 1 CoA-transferase family III rve PF00665.26 AHV92389.1 - 2.9e-32 111.3 0.7 4.3e-32 110.8 0.1 1.6 2 0 0 2 2 1 1 Integrase core domain LZ_Tnp_IS481 PF13011.6 AHV92389.1 - 7.7e-22 77.6 2.7 1.1e-19 70.7 0.4 2.6 1 1 1 2 2 2 1 leucine-zipper of insertion element IS481 rve_3 PF13683.6 AHV92389.1 - 5e-19 67.8 2.7 1.2e-18 66.6 2.7 1.7 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.6 AHV92389.1 - 6.1e-17 60.9 4.4 1.2e-07 31.3 0.1 2.7 2 0 0 2 2 2 2 Homeodomain-like domain HTH_28 PF13518.6 AHV92389.1 - 1.5e-15 57.1 6.5 5.9e-11 42.3 0.1 3.4 4 0 0 4 4 3 2 Helix-turn-helix domain HTH_29 PF13551.6 AHV92389.1 - 9.8e-12 44.7 0.6 2.6e-06 27.4 0.0 2.6 2 0 0 2 2 2 2 Winged helix-turn helix HTH_32 PF13565.6 AHV92389.1 - 9.4e-11 42.2 0.7 9.4e-11 42.2 0.7 2.4 2 1 0 2 2 2 1 Homeodomain-like domain HTH_38 PF13936.6 AHV92389.1 - 1.5e-06 27.9 0.6 5.1e-06 26.1 0.5 2.1 2 0 0 2 2 1 1 Helix-turn-helix domain MarR_2 PF12802.7 AHV92389.1 - 8e-06 25.6 3.1 9.5e-05 22.2 1.2 2.6 2 0 0 2 2 2 1 MarR family HTH_31 PF13560.6 AHV92389.1 - 1.4e-05 25.4 1.7 0.00059 20.1 0.4 3.2 3 0 0 3 3 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 AHV92389.1 - 3e-05 23.6 0.1 0.0064 16.1 0.3 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 AHV92389.1 - 4.6e-05 22.9 0.1 0.00056 19.4 0.2 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 YdaS_antitoxin PF15943.5 AHV92389.1 - 0.00022 21.0 0.2 0.24 11.3 0.0 2.8 2 0 0 2 2 2 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_Tnp_ISL3 PF13542.6 AHV92389.1 - 0.00023 20.5 8.5 0.002 17.5 0.6 3.9 4 0 0 4 4 3 1 Helix-turn-helix domain of transposase family ISL3 HTH_24 PF13412.6 AHV92389.1 - 0.00028 20.4 0.2 0.0021 17.6 0.3 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_3 PF01381.22 AHV92389.1 - 0.00032 20.7 0.7 0.013 15.5 0.3 2.5 2 0 0 2 2 2 1 Helix-turn-helix HTH_Crp_2 PF13545.6 AHV92389.1 - 0.0004 20.3 0.3 0.0027 17.6 0.2 2.3 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain Trp_repressor PF01371.19 AHV92389.1 - 0.00081 19.5 0.2 0.006 16.7 0.1 2.2 2 0 0 2 2 2 1 Trp repressor protein CENP-B_N PF04218.13 AHV92389.1 - 0.0016 18.0 0.0 1.6 8.5 0.1 2.3 2 0 0 2 2 2 1 CENP-B N-terminal DNA-binding domain LacI PF00356.21 AHV92389.1 - 0.0017 18.1 1.8 0.0046 16.7 0.7 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family Fe_dep_repress PF01325.19 AHV92389.1 - 0.002 18.3 0.0 0.034 14.4 0.1 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.20 AHV92389.1 - 0.0023 17.8 0.0 0.93 9.4 0.0 2.5 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 AHV92389.1 - 0.0025 17.6 1.3 0.035 13.9 0.7 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_psq PF05225.16 AHV92389.1 - 0.0025 17.5 0.7 2.3 8.0 0.4 2.9 3 0 0 3 3 3 1 helix-turn-helix, Psq domain HTH_11 PF08279.12 AHV92389.1 - 0.0026 17.7 0.4 0.015 15.3 0.5 2.2 2 0 0 2 2 2 1 HTH domain SpoIIID PF12116.8 AHV92389.1 - 0.0026 17.8 0.0 1.1 9.4 0.0 2.4 2 0 0 2 2 2 1 Stage III sporulation protein D HTH_AsnC-type PF13404.6 AHV92389.1 - 0.0036 17.1 2.7 0.045 13.6 1.1 2.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain RepB PF07506.11 AHV92389.1 - 0.0042 17.2 0.1 0.55 10.3 0.1 2.3 1 1 1 2 2 2 1 RepB plasmid partitioning protein HTH_17 PF12728.7 AHV92389.1 - 0.0043 17.2 0.7 6.1 7.1 0.0 3.3 3 1 0 3 3 3 0 Helix-turn-helix domain HTH_Tnp_1 PF01527.20 AHV92389.1 - 0.005 17.1 0.5 0.11 12.8 0.0 2.7 1 1 1 2 2 2 1 Transposase GntR PF00392.21 AHV92389.1 - 0.0053 16.4 0.8 0.5 10.1 0.3 2.5 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_10 PF04967.12 AHV92389.1 - 0.0077 16.0 0.1 0.049 13.4 0.2 2.2 2 0 0 2 2 2 1 HTH DNA binding domain HTH_35 PF13693.6 AHV92389.1 - 0.0093 16.0 1.5 0.073 13.1 0.6 2.7 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding UPF0175 PF03683.13 AHV92389.1 - 0.014 15.1 0.4 0.1 12.3 0.1 2.4 2 1 0 2 2 2 0 Uncharacterised protein family (UPF0175) HTH_30 PF13556.6 AHV92389.1 - 0.015 15.1 0.1 2 8.3 0.0 2.6 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain HTH_37 PF13744.6 AHV92389.1 - 0.016 15.2 0.1 0.13 12.3 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Tnp_4 PF13613.6 AHV92389.1 - 0.016 14.9 0.1 0.067 12.9 0.0 2.0 2 0 0 2 2 1 0 Helix-turn-helix of DDE superfamily endonuclease HTH_36 PF13730.6 AHV92389.1 - 0.02 14.8 0.1 0.58 10.2 0.0 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain KORA PF16509.5 AHV92389.1 - 0.034 14.4 0.1 3.6 8.0 0.0 3.0 3 0 0 3 3 3 0 TrfB plasmid transcriptional repressor MarR PF01047.22 AHV92389.1 - 0.045 13.7 0.1 0.14 12.1 0.1 1.8 2 0 0 2 2 1 0 MarR family DDE_Tnp_IS240 PF13610.6 AHV92389.1 - 0.048 13.9 0.1 0.071 13.3 0.1 1.3 1 0 0 1 1 1 0 DDE domain Crp PF00325.20 AHV92389.1 - 0.05 13.3 3.2 0.062 13.0 0.5 2.5 3 0 0 3 3 3 0 Bacterial regulatory proteins, crp family P22_Cro PF14549.6 AHV92389.1 - 0.051 13.4 1.6 9.6 6.1 0.1 2.5 2 0 0 2 2 2 0 DNA-binding transcriptional regulator Cro DUF746 PF05344.11 AHV92389.1 - 0.085 12.7 0.1 0.98 9.3 0.0 2.3 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) HTH_1 PF00126.27 AHV92389.1 - 0.1 12.5 2.8 4.7 7.2 0.5 2.6 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_26 PF13443.6 AHV92389.1 - 0.17 12.3 0.0 3.6 8.1 0.1 2.8 3 0 0 3 3 3 0 Cro/C1-type HTH DNA-binding domain HTH_8 PF02954.19 AHV92389.1 - 0.19 11.5 0.9 14 5.5 0.7 2.7 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family HTH_Tnp_Tc3_2 PF01498.18 AHV92389.1 - 0.27 11.5 2.6 0.47 10.7 0.1 2.6 3 0 0 3 3 1 0 Transposase HTH_33 PF13592.6 AHV92389.1 - 0.56 9.9 3.1 2.9 7.6 0.1 3.4 4 0 0 4 4 2 0 Winged helix-turn helix MerR PF00376.23 AHV92389.1 - 0.72 9.7 6.8 3.2 7.6 0.0 3.6 4 0 0 4 4 2 0 MerR family regulatory protein YjeF_N PF03853.15 AHV92390.1 - 6.5e-37 127.0 0.1 8e-37 126.7 0.1 1.1 1 0 0 1 1 1 1 YjeF-related protein N-terminus NUFIP2 PF15293.6 AHV92390.1 - 0.032 13.1 0.0 0.042 12.7 0.0 1.1 1 0 0 1 1 1 0 Nuclear fragile X mental retardation-interacting protein 2 DJ-1_PfpI PF01965.24 AHV92391.1 - 2.6e-16 59.9 0.0 8.2e-16 58.2 0.0 1.7 1 1 0 1 1 1 1 DJ-1/PfpI family ThiJ_like PF17124.5 AHV92391.1 - 5.1e-06 26.3 0.0 0.00022 21.0 0.0 2.1 1 1 0 1 1 1 1 ThiJ/PfpI family-like EamA PF00892.20 AHV92392.1 - 4.1e-11 43.2 26.2 3.6e-08 33.7 12.6 2.2 2 0 0 2 2 2 2 EamA-like transporter family Ycf66_N PF07444.11 AHV92392.1 - 0.022 14.9 0.7 0.022 14.9 0.7 3.2 3 0 0 3 3 3 0 Ycf66 protein N-terminus RseC_MucC PF04246.12 AHV92392.1 - 5.1 7.1 11.8 7 6.6 0.1 3.4 2 1 1 3 3 3 0 Positive regulator of sigma(E), RseC/MucC ABC_tran PF00005.27 AHV92393.1 - 6.9e-21 75.2 0.0 1.2e-20 74.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_29 PF13555.6 AHV92393.1 - 0.00032 20.4 0.2 0.00068 19.3 0.2 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain MMR_HSR1 PF01926.23 AHV92393.1 - 0.0051 16.9 0.0 0.0095 16.0 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 AHV92393.1 - 0.0058 16.5 0.1 0.0095 15.9 0.1 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_30 PF13604.6 AHV92393.1 - 0.01 15.6 1.1 0.017 14.8 0.2 1.7 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.12 AHV92393.1 - 0.016 14.5 0.6 1.7 7.9 0.3 2.1 2 0 0 2 2 2 0 Zeta toxin DrsE PF02635.15 AHV92393.1 - 0.022 15.1 0.0 0.044 14.1 0.0 1.6 1 1 0 1 1 1 0 DsrE/DsrF-like family AAA_21 PF13304.6 AHV92393.1 - 0.026 14.3 0.0 0.036 13.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 AHV92393.1 - 0.027 14.9 3.0 0.049 14.0 3.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.6 AHV92393.1 - 0.048 13.9 0.1 0.1 12.9 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 AHV92393.1 - 0.12 12.9 0.1 0.17 12.4 0.1 1.2 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 AHV92393.1 - 0.16 12.2 0.4 0.31 11.3 0.4 1.5 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 AHV92393.1 - 0.2 10.8 0.2 0.32 10.1 0.2 1.2 1 0 0 1 1 1 0 NB-ARC domain ABC_ATPase PF09818.9 AHV92393.1 - 0.26 10.1 0.4 0.38 9.5 0.4 1.1 1 0 0 1 1 1 0 Predicted ATPase of the ABC class Transpeptidase PF00905.22 AHV92394.1 - 6.4e-66 222.6 0.0 1.5e-65 221.4 0.0 1.6 2 0 0 2 2 2 1 Penicillin binding protein transpeptidase domain PBP_dimer PF03717.15 AHV92394.1 - 6.1e-40 137.5 0.0 8.8e-40 137.0 0.0 1.2 1 0 0 1 1 1 1 Penicillin-binding Protein dimerisation domain DivIC PF04977.15 AHV92395.1 - 4.6e-22 77.6 0.0 5.6e-22 77.3 0.0 1.1 1 0 0 1 1 1 1 Septum formation initiator LigB PF02900.18 AHV92396.1 - 2.6e-52 177.6 0.0 3e-52 177.4 0.0 1.0 1 0 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase GD_AH_C PF04295.13 AHV92397.1 - 3e-37 128.3 0.0 3.6e-37 128.1 0.0 1.1 1 0 0 1 1 1 1 D-galactarate dehydratase / Altronate hydrolase, C terminus SAF PF08666.12 AHV92397.1 - 6.7e-07 29.8 0.1 0.0035 17.9 0.0 2.4 1 1 1 2 2 2 2 SAF domain SBP_bac_6 PF13343.6 AHV92399.1 - 1.9e-18 66.8 0.1 3.2e-18 66.1 0.1 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 AHV92399.1 - 7.8e-15 55.4 0.7 3.9e-14 53.1 0.7 1.8 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 AHV92399.1 - 5e-13 49.7 1.5 1.3e-12 48.4 1.5 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 AHV92399.1 - 1.9e-10 40.9 0.4 2.9e-10 40.3 0.4 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Beta-lactamase2 PF13354.6 AHV92400.1 - 3.2e-35 121.6 0.0 3.7e-35 121.4 0.0 1.0 1 0 0 1 1 1 1 Beta-lactamase enzyme family Beta-lactamase PF00144.24 AHV92400.1 - 2.3e-18 66.6 1.3 8.5e-17 61.4 1.3 2.0 1 1 0 1 1 1 1 Beta-lactamase CHASE8 PF17152.4 AHV92400.1 - 0.021 15.1 0.0 2.1 8.7 0.0 2.3 1 1 1 2 2 2 0 Periplasmic sensor domain Ribosomal_L12 PF00542.19 AHV92401.1 - 2.3e-30 104.8 8.6 2.3e-30 104.8 8.6 1.8 2 0 0 2 2 2 1 Ribosomal protein L7/L12 C-terminal domain Ribosomal_L12_N PF16320.5 AHV92401.1 - 8.2e-21 73.4 16.1 1.8e-19 69.2 14.2 2.5 2 0 0 2 2 2 1 Ribosomal protein L7/L12 dimerisation domain PqqD PF05402.12 AHV92401.1 - 0.04 14.2 0.2 0.11 12.8 0.2 1.7 1 0 0 1 1 1 0 Coenzyme PQQ synthesis protein D (PqqD) Ribosomal_60s PF00428.19 AHV92401.1 - 2.6 8.7 26.8 0.12 13.0 12.2 2.2 1 1 1 2 2 2 0 60s Acidic ribosomal protein Acetyltransf_3 PF13302.7 AHV92402.1 - 3.3e-12 47.3 0.2 6.9e-12 46.2 0.0 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 AHV92402.1 - 0.0042 17.2 0.0 0.0065 16.6 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 AHV92402.1 - 0.0089 16.3 0.0 0.014 15.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family AA_kinase PF00696.28 AHV92403.1 - 3.5e-29 102.1 0.1 4.6e-29 101.7 0.1 1.1 1 0 0 1 1 1 1 Amino acid kinase family Acetyltransf_1 PF00583.25 AHV92403.1 - 2.2e-08 34.4 0.0 8e-08 32.5 0.0 1.9 1 1 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 AHV92403.1 - 2.6e-06 27.8 0.0 6.8e-06 26.4 0.0 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 AHV92403.1 - 0.0001 22.3 0.0 0.00022 21.2 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Peptidase_M75 PF09375.10 AHV92404.1 - 4.9e-103 344.6 4.1 5.8e-103 344.3 4.1 1.0 1 0 0 1 1 1 1 Imelysin DUF5102 PF17104.5 AHV92404.1 - 0.15 12.1 0.2 0.27 11.3 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF5102) Aldo_ket_red PF00248.21 AHV92405.1 - 5.3e-69 232.6 0.0 6e-69 232.5 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family ADH_zinc_N_2 PF13602.6 AHV92405.1 - 0.0018 19.3 0.1 0.097 13.7 0.0 2.4 2 0 0 2 2 2 1 Zinc-binding dehydrogenase Ala_racemase_N PF01168.20 AHV92405.1 - 0.0035 17.0 0.4 0.068 12.8 0.0 2.1 2 0 0 2 2 2 1 Alanine racemase, N-terminal domain Bac_luciferase PF00296.20 AHV92406.1 - 5.3e-54 183.8 0.0 6.7e-54 183.4 0.0 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase NMT1 PF09084.11 AHV92407.1 - 1e-22 81.1 0.1 1.7e-22 80.5 0.1 1.3 1 0 0 1 1 1 1 NMT1/THI5 like NMT1_2 PF13379.6 AHV92407.1 - 2.9e-18 66.5 2.8 9.6e-18 64.8 2.8 1.8 1 1 0 1 1 1 1 NMT1-like family SBP_bac_3 PF00497.20 AHV92407.1 - 1.1e-06 28.2 0.1 3.1e-06 26.8 0.0 1.6 2 0 0 2 2 2 1 Bacterial extracellular solute-binding proteins, family 3 YhfZ_C PF14503.6 AHV92407.1 - 0.00024 20.7 0.0 0.0004 20.0 0.0 1.3 1 0 0 1 1 1 1 YhfZ C-terminal domain ATG22 PF11700.8 AHV92408.1 - 2.3e-40 138.7 30.3 4.7e-31 108.0 15.6 3.1 1 1 2 3 3 3 3 Vacuole effluxer Atg22 like MFS_1 PF07690.16 AHV92408.1 - 1.8e-21 76.4 60.9 2.4e-14 53.0 33.5 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.6 AHV92408.1 - 2.7e-16 59.2 35.4 1.1e-13 50.6 18.8 2.2 1 1 1 2 2 2 2 MFS/sugar transport protein Cu-oxidase_4 PF02578.15 AHV92408.1 - 0.072 12.7 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 Multi-copper polyphenol oxidoreductase laccase 7tm_7 PF08395.12 AHV92408.1 - 1.6 7.9 10.0 0.028 13.7 1.1 2.3 2 1 0 2 2 2 0 7tm Chemosensory receptor Sugar_tr PF00083.24 AHV92408.1 - 2.8 6.7 40.3 0.043 12.7 19.0 2.8 2 1 1 3 3 3 0 Sugar (and other) transporter G_glu_transpept PF01019.21 AHV92409.1 - 6.3e-37 127.5 0.5 7e-37 127.4 0.5 1.0 1 0 0 1 1 1 1 Gamma-glutamyltranspeptidase Peroxidase_ext PF11895.8 AHV92409.1 - 0.17 11.9 0.0 0.32 10.9 0.0 1.4 1 0 0 1 1 1 0 Fungal peroxidase extension region 3HCDH_N PF02737.18 AHV92411.1 - 2.3e-43 148.1 0.0 3.6e-43 147.6 0.0 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ECH_1 PF00378.20 AHV92411.1 - 1.7e-31 109.5 0.0 2.6e-31 108.8 0.0 1.3 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 AHV92411.1 - 1.8e-26 93.5 0.0 2.5e-26 93.0 0.0 1.2 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase 3HCDH PF00725.22 AHV92411.1 - 1e-24 87.0 0.0 5.9e-24 84.5 0.0 2.3 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_binding_2 PF03446.15 AHV92411.1 - 0.00024 21.3 0.0 0.00057 20.1 0.0 1.6 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.16 AHV92411.1 - 0.005 16.5 0.0 0.0082 15.8 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA DAO PF01266.24 AHV92411.1 - 0.01 15.5 0.4 0.14 11.7 0.4 2.5 2 1 1 3 3 3 0 FAD dependent oxidoreductase AlaDh_PNT_C PF01262.21 AHV92411.1 - 0.055 12.8 0.2 0.09 12.1 0.2 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain UDPG_MGDP_dh_N PF03721.14 AHV92411.1 - 0.059 12.9 0.0 0.091 12.3 0.0 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox_2 PF07992.14 AHV92411.1 - 0.1 11.8 0.0 0.18 11.0 0.0 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Methyltr_RsmB-F PF01189.17 AHV92412.1 - 1.2e-43 149.1 0.0 1.9e-43 148.5 0.0 1.3 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltransf_31 PF13847.6 AHV92412.1 - 0.00053 19.8 0.0 0.0025 17.7 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 AHV92412.1 - 0.00085 18.7 0.0 0.0065 15.8 0.0 2.0 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family MTS PF05175.14 AHV92412.1 - 0.0015 18.1 0.0 0.011 15.3 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase small domain Methyltr_RsmF_N PF17125.5 AHV92412.1 - 0.0022 18.4 0.0 0.0043 17.5 0.0 1.5 1 0 0 1 1 1 1 N-terminal domain of 16S rRNA methyltransferase RsmF Methyltransf_25 PF13649.6 AHV92412.1 - 0.0078 16.9 0.1 0.053 14.2 0.0 2.4 2 0 0 2 2 2 1 Methyltransferase domain DUF4660 PF15559.6 AHV92412.1 - 0.023 15.0 0.3 0.023 15.0 0.3 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4660) GCD14 PF08704.10 AHV92412.1 - 0.05 13.3 0.0 0.092 12.4 0.0 1.3 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit Methyltransf_11 PF08241.12 AHV92412.1 - 0.051 14.2 0.1 19 6.0 0.0 2.7 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_15 PF09445.10 AHV92412.1 - 0.11 12.0 0.0 0.17 11.4 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_12 PF08242.12 AHV92412.1 - 0.11 13.2 0.0 0.96 10.2 0.0 2.5 2 0 0 2 2 2 0 Methyltransferase domain GSH-S_ATP PF02955.16 AHV92414.1 - 4.7e-57 192.2 0.2 5.4e-57 192.0 0.2 1.0 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain RimK PF08443.11 AHV92414.1 - 5e-09 36.0 0.0 5.6e-09 35.9 0.0 1.0 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_3 PF02655.14 AHV92414.1 - 0.071 13.1 0.0 0.087 12.9 0.0 1.5 1 1 0 1 1 1 0 ATP-grasp domain ATPgrasp_YheCD PF14398.6 AHV92414.1 - 0.18 11.0 0.0 0.27 10.4 0.0 1.3 1 0 0 1 1 1 0 YheC/D like ATP-grasp Rotamase_3 PF13616.6 AHV92416.1 - 2.4e-25 89.4 0.0 2.9e-25 89.1 0.0 1.2 1 0 0 1 1 1 1 PPIC-type PPIASE domain Rotamase PF00639.21 AHV92416.1 - 1.5e-22 80.4 0.0 1.8e-22 80.1 0.0 1.1 1 0 0 1 1 1 1 PPIC-type PPIASE domain Rotamase_2 PF13145.6 AHV92416.1 - 2.2e-09 38.2 0.0 2.4e-09 38.0 0.0 1.1 1 0 0 1 1 1 1 PPIC-type PPIASE domain Lipoprotein_9 PF03180.14 AHV92417.1 - 8.5e-100 332.7 2.0 9.6e-100 332.5 2.0 1.0 1 0 0 1 1 1 1 NLPA lipoprotein LysR_substrate PF03466.20 AHV92418.1 - 3.4e-23 82.1 0.2 5.2e-23 81.5 0.2 1.3 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 AHV92418.1 - 1.7e-21 75.9 0.4 3.9e-21 74.8 0.4 1.7 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_24 PF13412.6 AHV92418.1 - 0.011 15.3 0.2 0.08 12.5 0.0 2.5 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 AHV92418.1 - 0.02 14.8 1.1 0.089 12.7 0.1 2.6 3 0 0 3 3 3 0 MarR family DUF4198 PF10670.9 AHV92419.1 - 1.8e-70 237.6 0.2 2.1e-70 237.4 0.2 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4198) CarboxypepD_reg PF13620.6 AHV92419.1 - 0.00028 21.1 0.0 0.0046 17.2 0.0 2.3 2 0 0 2 2 2 1 Carboxypeptidase regulatory-like domain Rdx PF10262.9 AHV92419.1 - 0.02 15.1 0.0 5.5 7.3 0.0 2.4 2 1 0 2 2 2 0 Rdx family DUF2606 PF10794.9 AHV92419.1 - 0.096 12.5 0.0 0.17 11.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2606) 2-oxoacid_dh PF00198.23 AHV92420.1 - 1.8e-79 266.4 0.0 2.4e-79 266.1 0.0 1.1 1 0 0 1 1 1 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Biotin_lipoyl PF00364.22 AHV92420.1 - 1.9e-20 72.5 1.1 4.8e-20 71.2 1.1 1.8 1 0 0 1 1 1 1 Biotin-requiring enzyme E3_binding PF02817.17 AHV92420.1 - 3.8e-12 46.3 1.5 1.1e-11 44.9 1.5 1.8 1 0 0 1 1 1 1 e3 binding domain Biotin_lipoyl_2 PF13533.6 AHV92420.1 - 0.00012 21.9 0.5 0.0078 16.0 0.1 3.3 2 1 1 3 3 3 1 Biotin-lipoyl like GCV_H PF01597.19 AHV92420.1 - 0.15 11.9 0.5 0.44 10.5 0.4 1.9 1 1 1 2 2 2 0 Glycine cleavage H-protein PAS_6 PF08348.11 AHV92421.1 - 2.6e-34 117.5 0.0 3.6e-34 117.1 0.0 1.2 1 0 0 1 1 1 1 YheO-like PAS domain HTH_22 PF13309.6 AHV92421.1 - 7.8e-17 61.1 0.0 1.2e-16 60.5 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_23 PF13384.6 AHV92421.1 - 0.0041 16.9 0.1 0.0093 15.7 0.1 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_DeoR PF08220.12 AHV92421.1 - 0.017 14.9 0.0 0.039 13.7 0.0 1.6 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_AsnC-type PF13404.6 AHV92421.1 - 0.025 14.4 0.0 0.08 12.8 0.0 1.8 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_28 PF13518.6 AHV92421.1 - 0.038 14.1 0.2 0.084 13.0 0.2 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Crp_2 PF13545.6 AHV92421.1 - 0.04 13.9 0.6 2 8.5 0.2 2.7 1 1 1 2 2 2 0 Crp-like helix-turn-helix domain HTH_11 PF08279.12 AHV92421.1 - 0.056 13.4 0.0 0.16 11.9 0.0 1.9 1 1 0 1 1 1 0 HTH domain DinB_2 PF12867.7 AHV92421.1 - 0.065 13.7 0.2 0.14 12.7 0.2 1.4 1 1 0 1 1 1 0 DinB superfamily Arg_decarbox_C PF17944.1 AHV92421.1 - 0.2 12.2 0.7 0.73 10.4 0.3 2.1 2 0 0 2 2 2 0 Arginine decarboxylase C-terminal helical extension ECH_1 PF00378.20 AHV92422.1 - 1.4e-05 24.5 0.0 1.6e-05 24.3 0.0 1.1 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 AHV92422.1 - 0.013 15.1 0.0 0.015 14.9 0.0 1.1 1 0 0 1 1 1 0 Enoyl-CoA hydratase/isomerase OTCace_N PF02729.21 AHV92423.1 - 9.2e-42 142.5 0.0 2.4e-41 141.2 0.0 1.7 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 AHV92423.1 - 1.4e-24 86.9 0.0 2.1e-24 86.4 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HTH_31 PF13560.6 AHV92423.1 - 0.1 13.0 0.4 0.35 11.3 0.4 2.0 1 0 0 1 1 1 0 Helix-turn-helix domain DUF934 PF06073.12 AHV92424.1 - 6.7e-19 67.8 0.0 6.9e-19 67.7 0.0 1.0 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF934) LysR_substrate PF03466.20 AHV92425.1 - 6e-31 107.4 0.9 6.8e-31 107.3 0.9 1.0 1 0 0 1 1 1 1 LysR substrate binding domain Nup54_57_C PF18570.1 AHV92425.1 - 0.14 11.7 0.0 0.23 11.1 0.0 1.3 1 0 0 1 1 1 0 NUP57/Nup54 C-terminal domain FimA PF16970.5 AHV92427.1 - 3.9e-29 101.7 0.1 6.4e-29 101.0 0.1 1.3 1 1 0 1 1 1 1 Type-1 fimbrial protein, A Fimbrial PF00419.20 AHV92427.1 - 4.5e-10 40.0 0.3 5.6e-10 39.7 0.3 1.1 1 0 0 1 1 1 1 Fimbrial protein DUF2271 PF10029.9 AHV92428.1 - 1.1e-49 167.6 0.1 1.3e-49 167.4 0.1 1.0 1 0 0 1 1 1 1 Predicted periplasmic protein (DUF2271) SpoVR PF04293.13 AHV92429.1 - 6.6e-130 433.6 0.0 8e-130 433.3 0.0 1.0 1 0 0 1 1 1 1 SpoVR like protein MCRS_N PF13325.6 AHV92429.1 - 0.048 13.7 0.0 0.073 13.1 0.0 1.3 1 0 0 1 1 1 0 N-terminal region of micro-spherule protein Glyco_transf_9 PF01075.17 AHV92430.1 - 8.5e-11 41.6 0.0 1.7e-10 40.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase family 9 (heptosyltransferase) DUF1583 PF07622.11 AHV92430.1 - 0.029 13.2 0.0 0.052 12.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1583) OsmC PF02566.19 AHV92431.1 - 6.1e-17 61.9 0.0 1.8e-16 60.5 0.0 1.6 2 0 0 2 2 2 1 OsmC-like protein HMGL-like PF00682.19 AHV92432.1 - 1.7e-43 149.1 0.0 2.2e-43 148.7 0.0 1.1 1 0 0 1 1 1 1 HMGL-like Rick_17kDa_Anti PF05433.15 AHV92433.1 - 8.8e-08 31.9 24.5 1.5e-07 31.1 24.5 1.4 1 0 0 1 1 1 1 Glycine zipper 2TM domain Bacteriocin_IIc PF10439.9 AHV92433.1 - 0.0043 17.1 12.1 0.0043 17.1 12.1 1.7 2 0 0 2 2 2 1 Bacteriocin class II with double-glycine leader peptide Gly-zipper_Omp PF13488.6 AHV92433.1 - 0.0081 16.1 25.3 0.023 14.7 25.2 1.7 1 1 1 2 2 2 2 Glycine zipper Gly-zipper_YMGG PF13441.6 AHV92433.1 - 0.011 15.5 25.0 0.012 15.3 23.3 1.9 1 1 1 2 2 2 0 YMGG-like Gly-zipper Metallopep PF12044.8 AHV92433.1 - 0.18 10.4 0.6 0.19 10.3 0.6 1.1 1 0 0 1 1 1 0 Putative peptidase family DDE_Tnp_1_assoc PF13808.6 AHV92433.1 - 0.25 11.4 0.1 0.35 10.9 0.1 1.2 1 0 0 1 1 1 0 DDE_Tnp_1-associated Gly-zipper_OmpA PF13436.6 AHV92433.1 - 0.41 10.5 24.3 1.5 8.7 24.3 1.9 1 1 0 1 1 1 0 Glycine-zipper domain Amidohydro_2 PF04909.14 AHV92434.1 - 1.7e-15 57.6 5.0 1.5e-14 54.4 1.5 2.3 2 0 0 2 2 2 2 Amidohydrolase HRDC PF00570.23 AHV92434.1 - 0.073 13.1 0.0 0.33 11.0 0.0 2.0 2 0 0 2 2 2 0 HRDC domain Succ_CoA_lig PF13607.6 AHV92435.1 - 7.3e-36 123.0 0.9 1.8e-34 118.5 1.0 2.8 2 1 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain ATP-grasp_5 PF13549.6 AHV92435.1 - 3.3e-23 82.3 0.0 1.7e-22 80.0 0.0 2.0 1 1 1 2 2 2 1 ATP-grasp domain Acetyltransf_1 PF00583.25 AHV92435.1 - 1.3e-08 35.1 0.0 3.3e-08 33.8 0.0 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.7 AHV92435.1 - 1.2e-05 26.0 0.0 6.7e-05 23.6 0.0 2.2 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain CoA_binding_2 PF13380.6 AHV92435.1 - 0.0053 17.2 0.0 0.052 14.0 0.0 2.5 2 0 0 2 2 2 1 CoA binding domain Acetyltransf_10 PF13673.7 AHV92435.1 - 0.035 14.0 0.0 0.064 13.2 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain FR47 PF08445.10 AHV92435.1 - 0.058 13.4 0.0 0.13 12.3 0.0 1.5 1 0 0 1 1 1 0 FR47-like protein tRNA-synt_1 PF00133.22 AHV92436.1 - 4.8e-190 632.8 0.0 5.9e-190 632.5 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 AHV92436.1 - 1.5e-24 86.7 0.0 2.6e-24 85.9 0.0 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 AHV92436.1 - 4e-19 68.6 0.0 2.2e-12 46.5 0.0 2.9 3 0 0 3 3 3 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 AHV92436.1 - 7.7e-08 32.0 0.0 0.00013 21.4 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain zf-FPG_IleRS PF06827.14 AHV92436.1 - 1.3e-06 28.1 4.7 1.3e-06 28.1 4.7 2.0 2 0 0 2 2 2 1 Zinc finger found in FPG and IleRS tRNA-synt_1f PF01921.18 AHV92436.1 - 8.4e-06 24.9 0.0 3.2e-05 23.0 0.0 1.8 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1_2 PF13603.6 AHV92436.1 - 0.00079 19.0 0.0 0.0015 18.1 0.0 1.4 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 TctC PF03401.14 AHV92438.1 - 7e-67 225.4 0.2 9.2e-67 225.0 0.2 1.1 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor ArfA PF03889.13 AHV92438.1 - 0.041 13.4 0.0 0.084 12.4 0.0 1.4 1 0 0 1 1 1 0 Alternative ribosome-rescue factor A SBP_bac_3 PF00497.20 AHV92438.1 - 0.084 12.3 0.1 0.17 11.3 0.1 1.6 1 1 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 Phosphonate-bd PF12974.7 AHV92438.1 - 0.13 11.9 0.2 0.45 10.0 0.2 1.9 1 1 0 1 1 1 0 ABC transporter, phosphonate, periplasmic substrate-binding protein GTP_EFTU PF00009.27 AHV92439.1 - 5.2e-58 195.8 0.0 7.3e-58 195.3 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.17 AHV92439.1 - 4.9e-33 113.8 0.0 1e-32 112.8 0.0 1.6 1 0 0 1 1 1 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.25 AHV92439.1 - 2e-17 63.4 5.8 4.7e-17 62.1 5.8 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 AHV92439.1 - 1.7e-05 24.9 0.0 3e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase cobW PF02492.19 AHV92439.1 - 0.04 13.5 0.5 0.067 12.8 0.0 1.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain RsgA_GTPase PF03193.16 AHV92439.1 - 0.11 12.3 0.1 0.29 11.0 0.0 1.7 2 0 0 2 2 2 0 RsgA GTPase Lsm_C PF14894.6 AHV92439.1 - 0.15 11.9 2.8 0.31 10.8 2.8 1.5 1 0 0 1 1 1 0 Lsm C-terminal ApbE PF02424.15 AHV92440.1 - 1.9e-79 266.9 0.0 2.2e-79 266.7 0.0 1.0 1 0 0 1 1 1 1 ApbE family ADH_zinc_N PF00107.26 AHV92441.1 - 4e-27 94.8 0.1 8.9e-27 93.6 0.1 1.6 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 AHV92441.1 - 2.1e-24 85.5 0.2 4.8e-24 84.3 0.2 1.7 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.6 AHV92441.1 - 2.1e-05 25.6 0.0 3.7e-05 24.8 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase 2-Hacid_dh_C PF02826.19 AHV92441.1 - 0.0021 17.4 0.2 0.0035 16.7 0.2 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 AHV92441.1 - 0.0026 17.1 2.3 0.0043 16.4 2.3 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain MinC_C PF03775.16 AHV92441.1 - 0.016 15.2 1.3 2.4 8.2 0.0 2.3 2 0 0 2 2 2 0 Septum formation inhibitor MinC, C-terminal domain RTC4 PF14474.6 AHV92441.1 - 0.099 12.8 0.0 0.17 12.0 0.0 1.3 1 0 0 1 1 1 0 RTC4-like domain TrkA_N PF02254.18 AHV92441.1 - 0.14 12.5 0.1 0.23 11.7 0.1 1.4 1 0 0 1 1 1 0 TrkA-N domain Fe-S_biosyn PF01521.20 AHV92442.1 - 1.5e-23 83.1 0.0 1.6e-23 83.0 0.0 1.0 1 0 0 1 1 1 1 Iron-sulphur cluster biosynthesis ABC_tran PF00005.27 AHV92443.1 - 1.1e-34 119.9 0.0 1.4e-34 119.6 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 AHV92443.1 - 1.4e-08 35.0 0.1 0.0022 17.8 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 AHV92443.1 - 4.4e-06 27.2 0.7 1.5e-05 25.5 0.7 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 AHV92443.1 - 0.00022 20.9 0.1 0.00038 20.2 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain NACHT PF05729.12 AHV92443.1 - 0.00046 20.1 0.2 0.011 15.6 0.1 2.1 2 0 0 2 2 2 1 NACHT domain SMC_N PF02463.19 AHV92443.1 - 0.00054 19.5 0.0 0.38 10.2 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 AHV92443.1 - 0.0011 19.3 1.2 0.023 15.0 0.3 2.2 2 0 0 2 2 2 1 AAA domain Rad17 PF03215.15 AHV92443.1 - 0.0013 18.7 0.2 0.0018 18.2 0.2 1.2 1 0 0 1 1 1 1 Rad17 P-loop domain RsgA_GTPase PF03193.16 AHV92443.1 - 0.0016 18.4 0.1 0.0031 17.4 0.1 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_25 PF13481.6 AHV92443.1 - 0.0029 17.2 1.0 0.0064 16.1 0.2 1.8 2 1 0 2 2 2 1 AAA domain AAA PF00004.29 AHV92443.1 - 0.0068 16.8 0.0 0.08 13.4 0.0 2.2 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 AHV92443.1 - 0.0083 16.1 0.6 0.016 15.2 0.2 1.6 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 AHV92443.1 - 0.01 16.0 0.6 0.046 13.9 0.6 2.0 1 1 0 1 1 1 1 AAA domain Mg_chelatase PF01078.21 AHV92443.1 - 0.022 14.1 0.1 0.048 13.0 0.1 1.5 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_28 PF13521.6 AHV92443.1 - 0.038 14.2 1.0 0.094 13.0 0.2 2.0 3 0 0 3 3 2 0 AAA domain RNA_helicase PF00910.22 AHV92443.1 - 0.05 14.0 0.1 0.099 13.0 0.1 1.5 1 0 0 1 1 1 0 RNA helicase AAA_30 PF13604.6 AHV92443.1 - 0.052 13.3 0.2 0.15 11.8 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 AHV92443.1 - 0.083 13.4 0.0 0.13 12.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 AHV92443.1 - 0.12 12.4 0.0 0.41 10.7 0.1 1.8 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_14 PF13173.6 AHV92443.1 - 0.12 12.4 0.0 0.25 11.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 AHV92443.1 - 0.16 12.2 0.3 2 8.7 0.3 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_24 PF13479.6 AHV92443.1 - 0.18 11.5 0.1 0.28 10.9 0.1 1.3 1 0 0 1 1 1 0 AAA domain G-alpha PF00503.20 AHV92443.1 - 0.19 10.9 0.0 0.28 10.3 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit ATPase_2 PF01637.18 AHV92443.1 - 0.21 11.5 0.0 0.32 10.9 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_23 PF13476.6 AHV92443.1 - 0.26 11.8 0.1 0.38 11.2 0.1 1.1 1 0 0 1 1 1 0 AAA domain AAA_PrkA PF08298.11 AHV92443.1 - 0.26 10.1 0.1 0.37 9.7 0.1 1.2 1 0 0 1 1 1 0 PrkA AAA domain NB-ARC PF00931.22 AHV92443.1 - 0.27 10.4 0.0 0.45 9.7 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain KbaA PF14089.6 AHV92444.1 - 0.091 12.6 0.0 0.13 12.1 0.0 1.2 1 0 0 1 1 1 0 KinB-signalling pathway activation in sporulation Form-deh_trans PF09163.11 AHV92444.1 - 0.28 11.0 0.1 0.28 11.0 0.1 2.5 2 1 0 2 2 2 0 Formate dehydrogenase N, transmembrane SCO1-SenC PF02630.14 AHV92445.1 - 0.008 16.1 0.0 0.011 15.7 0.0 1.1 1 0 0 1 1 1 1 SCO1/SenC EPSP_synthase PF00275.20 AHV92446.1 - 3.8e-46 157.6 0.0 4.6e-46 157.4 0.0 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Transpeptidase PF00905.22 AHV92447.1 - 7.1e-70 235.6 0.0 8.7e-70 235.3 0.0 1.1 1 0 0 1 1 1 1 Penicillin binding protein transpeptidase domain PBP_dimer PF03717.15 AHV92447.1 - 1.4e-22 80.9 0.2 6.8e-21 75.4 0.2 2.3 1 1 0 1 1 1 1 Penicillin-binding Protein dimerisation domain FCD PF07729.12 AHV92448.1 - 4.4e-22 78.8 10.2 6.8e-22 78.2 10.2 1.3 1 0 0 1 1 1 1 FCD domain GntR PF00392.21 AHV92448.1 - 3.6e-14 52.2 0.1 6.7e-14 51.3 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_24 PF13412.6 AHV92448.1 - 0.0031 17.0 0.0 0.0074 15.8 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 AHV92448.1 - 0.0096 15.7 2.9 0.012 15.4 0.2 2.6 3 0 0 3 3 3 1 AsnC-type helix-turn-helix domain PaaX PF07848.12 AHV92448.1 - 0.099 12.9 0.1 0.74 10.1 0.0 2.3 2 0 0 2 2 2 0 PaaX-like protein Big_6 PF17936.1 AHV92449.1 - 7.9e-91 298.4 97.9 1.5e-11 44.4 8.1 11.3 11 0 0 11 11 11 11 Bacterial Ig domain IAT_beta PF11924.8 AHV92449.1 - 3.8e-64 216.8 0.0 6.1e-64 216.1 0.0 1.3 1 0 0 1 1 1 1 Inverse autotransporter, beta-domain ESPR PF13018.6 AHV92449.1 - 4.1e-09 36.1 1.2 4.1e-09 36.1 1.2 2.3 3 0 0 3 3 3 1 Extended Signal Peptide of Type V secretion system HMA PF00403.26 AHV92449.1 - 1.2e-05 25.6 19.5 2.5 8.6 0.1 7.3 8 0 0 8 8 8 3 Heavy-metal-associated domain Cadherin_3 PF16184.5 AHV92449.1 - 4.4e-05 23.4 1.9 20 5.2 0.1 5.8 5 0 0 5 5 5 0 Cadherin-like UBX PF00789.20 AHV92449.1 - 0.004 17.3 0.1 37 4.6 0.0 5.2 6 0 0 6 6 6 0 UBX domain Big_3_4 PF13754.6 AHV92449.1 - 0.0086 15.8 0.4 10 5.9 0.0 4.1 4 0 0 4 4 4 1 Domain of unknown function SCP2 PF02036.17 AHV92449.1 - 0.047 14.2 4.3 41 4.8 0.0 6.0 7 1 0 7 7 7 0 SCP-2 sterol transfer family Rib PF08428.10 AHV92449.1 - 0.056 13.4 52.7 1.7 8.7 0.3 11.9 11 2 1 12 12 12 0 Rib/alpha-like repeat UnbV_ASPIC PF07593.12 AHV92449.1 - 0.067 13.2 13.7 50 4.0 0.1 8.4 10 0 0 10 10 10 0 ASPIC and UnbV HPP PF04982.13 AHV92450.1 - 8.7e-38 129.2 15.0 8.7e-38 129.2 15.0 1.8 2 0 0 2 2 2 1 HPP family CBS PF00571.28 AHV92450.1 - 2.9e-06 27.6 0.1 6.3e-06 26.6 0.1 1.5 1 0 0 1 1 1 1 CBS domain Ring_hydroxyl_A PF00848.19 AHV92451.1 - 7.1e-14 52.3 0.0 8.3e-14 52.1 0.0 1.0 1 0 0 1 1 1 1 Ring hydroxylating alpha subunit (catalytic domain) BPD_transp_1 PF00528.22 AHV92452.1 - 6.3e-24 84.7 12.1 7.5e-24 84.5 12.1 1.1 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component MFS_1_like PF12832.7 AHV92453.1 - 3.1e-47 161.3 12.9 7.1e-47 160.1 12.9 1.5 1 1 0 1 1 1 1 MFS_1 like family MFS_1 PF07690.16 AHV92453.1 - 3e-15 56.0 48.8 3.4e-08 32.8 27.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily LacY_symp PF01306.19 AHV92453.1 - 1.8e-06 27.0 9.4 3.1e-05 23.0 1.9 2.2 2 0 0 2 2 2 2 LacY proton/sugar symporter Nuc_H_symport PF03825.16 AHV92453.1 - 0.00051 19.1 17.0 0.00069 18.7 17.0 1.1 1 0 0 1 1 1 1 Nucleoside H+ symporter MFS_2 PF13347.6 AHV92453.1 - 0.13 10.8 26.0 0.91 8.0 26.1 2.1 1 1 0 1 1 1 0 MFS/sugar transport protein Beta_elim_lyase PF01212.21 AHV92454.1 - 1.8e-85 286.7 0.0 2.6e-85 286.3 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 AHV92454.1 - 0.00053 19.4 0.1 0.011 15.1 0.1 2.0 2 0 0 2 2 2 2 DegT/DnrJ/EryC1/StrS aminotransferase family PS-DH PF14765.6 AHV92455.1 - 7.7e-52 176.4 2.4 1e-51 175.9 2.4 1.1 1 0 0 1 1 1 1 Polyketide synthase dehydratase Acyl_transf_1 PF00698.21 AHV92455.1 - 7.3e-05 22.4 0.0 0.0001 21.9 0.0 1.2 1 0 0 1 1 1 1 Acyl transferase domain MmgE_PrpD PF03972.14 AHV92456.1 - 6e-108 361.2 0.9 6e-108 361.2 0.9 1.3 1 1 1 2 2 2 1 MmgE/PrpD family SBP_bac_5 PF00496.22 AHV92458.1 - 3.7e-88 296.0 3.4 1.9e-74 250.9 0.1 2.1 1 1 1 2 2 2 2 Bacterial extracellular solute-binding proteins, family 5 Middle Bac_export_3 PF01313.19 AHV92459.1 - 2.7e-29 100.9 9.0 3.4e-29 100.6 9.0 1.1 1 0 0 1 1 1 1 Bacterial export proteins, family 3 Bac_export_1 PF01311.20 AHV92459.1 - 0.00098 18.7 8.6 0.0011 18.6 8.6 1.0 1 0 0 1 1 1 1 Bacterial export proteins, family 1 Ly49 PF08391.10 AHV92459.1 - 0.78 10.1 2.1 0.55 10.6 1.1 1.3 1 1 0 1 1 1 0 Ly49-like protein, N-terminal region Bac_export_2 PF01312.19 AHV92459.1 - 1.6 7.9 6.0 3.2 6.9 3.5 1.9 1 1 1 2 2 2 0 FlhB HrpN YscU SpaS Family DUF3974 PF13120.6 AHV92459.1 - 1.9 8.6 4.2 3.3 7.8 0.2 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF3974) rve_3 PF13683.6 AHV92460.1 - 8.5e-32 108.8 0.1 4.5e-31 106.4 0.0 2.2 2 0 0 2 2 2 1 Integrase core domain rve PF00665.26 AHV92460.1 - 2.5e-24 85.7 0.0 6.4e-23 81.2 0.0 2.2 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 AHV92460.1 - 1.8e-11 44.0 8.6 3.6e-11 43.0 8.6 1.5 1 0 0 1 1 1 1 HTH-like domain rve_2 PF13333.6 AHV92460.1 - 5.7e-07 29.6 0.0 1.3e-06 28.5 0.0 1.6 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AHV92460.1 - 0.00048 20.4 0.0 0.0011 19.3 0.0 1.6 1 1 1 2 2 2 1 DDE domain Rhomboid_SP PF12595.8 AHV92460.1 - 0.0072 15.7 0.3 2 7.7 0.0 2.3 1 1 0 2 2 2 2 Rhomboid serine protease DUF1780 PF08682.10 AHV92460.1 - 0.12 12.0 0.8 1.8 8.2 0.2 2.2 2 0 0 2 2 2 0 Putative endonuclease, protein of unknown function (DUF1780) TonB_dep_Rec PF00593.24 AHV92461.1 - 1.6e-38 133.8 21.7 2.7e-38 133.1 21.7 1.4 1 0 0 1 1 1 1 TonB dependent receptor Plug PF07715.15 AHV92461.1 - 3e-17 63.1 0.4 8e-17 61.8 0.4 1.8 1 0 0 1 1 1 1 TonB-dependent Receptor Plug Domain Pertactin PF03212.14 AHV92461.1 - 0.15 12.0 0.0 0.36 10.8 0.0 1.6 1 0 0 1 1 1 0 Pertactin LysE PF01810.18 AHV92462.1 - 2.5e-29 102.1 11.4 2.8e-29 102.0 11.4 1.0 1 0 0 1 1 1 1 LysE type translocator TerC PF03741.16 AHV92462.1 - 0.021 14.5 0.9 0.031 14.0 0.4 1.6 1 1 0 1 1 1 0 Integral membrane protein TerC family RseC_MucC PF04246.12 AHV92462.1 - 2.5 8.1 3.8 7.2 6.6 0.3 2.2 2 0 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC DUF179 PF02622.15 AHV92463.1 - 0.0043 17.0 0.0 0.0051 16.8 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1678 DDE_Tnp_ISL3 PF01610.17 AHV92464.1 - 1.6e-64 217.9 1.1 2.4e-64 217.3 0.2 1.6 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV92464.1 - 1.4e-11 43.6 0.1 3.6e-11 42.3 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV92464.1 - 5.2e-09 36.6 11.2 1.1e-08 35.6 11.2 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV92464.1 - 0.0056 16.7 0.2 0.016 15.3 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain NOB1_Zn_bind PF08772.11 AHV92464.1 - 0.017 15.3 0.2 1.2 9.3 0.0 2.5 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like SLT_L PF14718.6 AHV92464.1 - 0.023 14.8 1.3 0.023 14.8 1.3 1.8 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain zf-IS66 PF13005.7 AHV92464.1 - 1 9.8 6.6 3.6 8.1 6.6 2.0 1 0 0 1 1 1 0 zinc-finger binding domain of transposase IS66 Methyltrans_RNA PF04452.14 AHV92465.1 - 3.4e-65 219.6 0.0 4e-65 219.3 0.0 1.0 1 0 0 1 1 1 1 RNA methyltransferase CTP_transf_like PF01467.26 AHV92466.1 - 7.6e-09 35.9 0.0 9.4e-09 35.6 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase-like TonB_dep_Rec PF00593.24 AHV92467.1 - 1e-53 183.9 6.2 1.2e-53 183.7 6.2 1.0 1 0 0 1 1 1 1 TonB dependent receptor OMP_b-brl_3 PF14905.6 AHV92467.1 - 7.2e-08 31.8 0.0 5e-07 29.1 0.0 1.8 1 1 0 1 1 1 1 Outer membrane protein beta-barrel family BPD_transp_1 PF00528.22 AHV92468.1 - 6.3e-28 97.8 14.7 6.3e-28 97.8 14.7 2.0 1 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 AHV92468.1 - 2.7e-14 52.8 0.6 2.7e-14 52.8 0.6 3.2 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C DUF3482 PF11981.8 AHV92468.1 - 0.17 11.2 1.2 0.23 10.8 1.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3482) KR PF08659.10 AHV92469.1 - 3.5e-61 206.2 0.8 3.5e-61 206.2 0.8 2.3 2 0 0 2 2 2 1 KR domain ADH_zinc_N PF00107.26 AHV92469.1 - 5.9e-22 78.0 0.1 2.6e-21 76.0 0.0 2.1 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 AHV92469.1 - 3e-20 73.6 0.0 8.3e-20 72.2 0.0 1.8 1 0 0 1 1 1 1 Zinc-binding dehydrogenase adh_short PF00106.25 AHV92469.1 - 1.3e-18 67.2 0.8 5e-17 62.0 0.0 2.5 2 0 0 2 2 2 1 short chain dehydrogenase PP-binding PF00550.25 AHV92469.1 - 8.5e-15 54.9 0.1 1.9e-14 53.7 0.1 1.7 1 0 0 1 1 1 1 Phosphopantetheine attachment site adh_short_C2 PF13561.6 AHV92469.1 - 7e-09 35.6 0.2 7e-09 35.6 0.2 2.2 2 0 0 2 2 2 1 Enoyl-(Acyl carrier protein) reductase GDP_Man_Dehyd PF16363.5 AHV92469.1 - 5.5e-05 22.7 0.0 0.00034 20.1 0.0 2.1 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase YjeF_N PF03853.15 AHV92469.1 - 0.00012 22.1 0.5 0.0018 18.2 0.0 2.4 2 0 0 2 2 2 1 YjeF-related protein N-terminus Polysacc_synt_2 PF02719.15 AHV92469.1 - 0.00066 18.9 0.0 0.0011 18.2 0.0 1.4 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein ADH_N PF08240.12 AHV92469.1 - 0.012 15.5 0.1 0.026 14.4 0.1 1.5 1 0 0 1 1 1 0 Alcohol dehydrogenase GroES-like domain NAD_binding_10 PF13460.6 AHV92469.1 - 0.42 10.5 3.7 0.53 10.2 0.2 2.3 2 0 0 2 2 2 0 NAD(P)H-binding UvrD_C PF13361.6 AHV92470.1 - 1.4e-20 74.0 0.0 3.6e-20 72.6 0.0 1.6 2 0 0 2 2 2 1 UvrD-like helicase C-terminal domain UvrD_C_2 PF13538.6 AHV92470.1 - 2.9e-13 49.4 0.5 1.1e-12 47.6 0.2 2.2 1 1 0 1 1 1 1 UvrD-like helicase C-terminal domain AAA_12 PF13087.6 AHV92470.1 - 0.022 14.4 0.0 0.029 14.0 0.0 1.1 1 0 0 1 1 1 0 AAA domain Viral_helicase1 PF01443.18 AHV92470.1 - 0.035 13.8 0.0 0.066 12.9 0.0 1.4 1 1 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Cob_adeno_trans PF01923.18 AHV92471.1 - 3.1e-51 173.8 0.0 3.7e-51 173.5 0.0 1.1 1 0 0 1 1 1 1 Cobalamin adenosyltransferase DUF3077 PF11275.8 AHV92471.1 - 0.17 12.1 1.7 3.3 8.0 0.0 2.9 2 1 1 3 3 3 0 Protein of unknown function (DUF3077) HpcH_HpaI PF03328.14 AHV92472.1 - 2e-17 63.1 0.0 6.7e-17 61.4 0.0 1.8 1 1 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family SNARE_assoc PF09335.11 AHV92472.1 - 4.5e-10 40.1 0.5 7.9e-10 39.3 0.5 1.3 1 0 0 1 1 1 1 SNARE associated Golgi protein C-C_Bond_Lyase PF15617.6 AHV92472.1 - 6.2e-06 25.6 0.0 0.00038 19.7 0.0 2.1 2 0 0 2 2 2 2 C-C_Bond_Lyase of the TIM-Barrel fold AhpC-TSA PF00578.21 AHV92473.1 - 3.5e-24 85.1 0.0 4e-24 84.9 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 AHV92473.1 - 1.6e-11 44.2 0.0 1.7e-11 44.0 0.0 1.1 1 0 0 1 1 1 1 Redoxin SCO1-SenC PF02630.14 AHV92473.1 - 0.13 12.1 0.0 0.24 11.3 0.0 1.4 1 0 0 1 1 1 0 SCO1/SenC ALS_ss_C PF10369.9 AHV92474.1 - 2.7e-28 98.0 6.3 1.4e-27 95.7 2.2 2.2 2 0 0 2 2 2 1 Small subunit of acetolactate synthase ACT_5 PF13710.6 AHV92474.1 - 7.3e-16 57.8 0.3 1.7e-15 56.6 0.1 1.7 2 0 0 2 2 2 1 ACT domain ACT PF01842.25 AHV92474.1 - 5.3e-15 54.9 0.3 1.3e-14 53.7 0.2 1.7 1 1 0 1 1 1 1 ACT domain ACT_4 PF13291.6 AHV92474.1 - 0.0001 22.8 0.9 0.00022 21.7 0.4 1.8 2 0 0 2 2 2 1 ACT domain Proteasome PF00227.26 AHV92475.1 - 1.9e-13 50.3 0.0 3.5e-13 49.5 0.0 1.4 1 1 0 1 1 1 1 Proteasome subunit Sigma70_r4_2 PF08281.12 AHV92476.1 - 2.5e-18 65.5 0.2 9.3e-18 63.6 0.0 2.1 3 0 0 3 3 3 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 AHV92476.1 - 6e-09 35.3 0.0 1.3e-08 34.2 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.6 AHV92476.1 - 2.8e-06 27.0 0.1 4.7e-05 23.1 0.0 2.6 3 0 0 3 3 3 1 Homeodomain-like domain Sigma70_r2 PF04542.14 AHV92476.1 - 2.4e-05 24.0 0.3 4.6e-05 23.1 0.3 1.4 1 0 0 1 1 1 1 Sigma-70 region 2 Sigma70_ECF PF07638.11 AHV92476.1 - 0.00012 22.0 0.0 0.00022 21.2 0.0 1.5 1 1 0 1 1 1 1 ECF sigma factor HTH_31 PF13560.6 AHV92476.1 - 0.00029 21.1 0.2 0.081 13.3 0.1 2.7 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.6 AHV92476.1 - 0.0079 15.7 0.0 0.017 14.7 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_38 PF13936.6 AHV92476.1 - 0.017 14.9 0.0 0.054 13.3 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_11 PF08279.12 AHV92476.1 - 0.072 13.1 0.0 0.15 12.1 0.0 1.5 1 0 0 1 1 1 0 HTH domain HTH_40 PF14493.6 AHV92476.1 - 0.088 13.3 0.0 0.22 12.0 0.0 1.6 1 1 1 2 2 2 0 Helix-turn-helix domain Bac_GDH PF05088.12 AHV92476.1 - 0.099 10.1 0.0 0.11 10.0 0.0 1.0 1 0 0 1 1 1 0 Bacterial NAD-glutamate dehydrogenase GerE PF00196.19 AHV92476.1 - 0.13 11.9 0.0 0.26 10.9 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family TnsD PF15978.5 AHV92476.1 - 0.22 10.4 0.0 0.25 10.3 0.0 1.2 1 0 0 1 1 1 0 Tn7-like transposition protein D tRNA_synt_2f PF02092.17 AHV92477.1 - 2.7e-172 574.4 0.0 3.2e-172 574.2 0.0 1.1 1 0 0 1 1 1 1 Glycyl-tRNA synthetase beta subunit DALR_1 PF05746.15 AHV92477.1 - 1.4e-05 25.3 0.1 4.3e-05 23.7 0.1 1.9 1 0 0 1 1 1 1 DALR anticodon binding domain MOSC_N PF03476.16 AHV92478.1 - 1.1e-10 41.4 0.0 1.9e-10 40.7 0.0 1.4 2 0 0 2 2 2 1 MOSC N-terminal beta barrel domain LysR_substrate PF03466.20 AHV92479.1 - 1.2e-38 132.6 0.3 1.8e-38 132.0 0.3 1.3 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 AHV92479.1 - 7.2e-17 61.1 2.9 1.5e-16 60.1 2.9 1.6 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family DUF2946 PF11162.8 AHV92480.1 - 1.2 9.8 11.3 1.4 9.6 11.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2946) Toluene_X PF03349.16 AHV92481.1 - 7.9e-105 350.9 12.0 9.5e-105 350.7 12.0 1.0 1 0 0 1 1 1 1 Outer membrane protein transport protein (OMPP1/FadL/TodX) DUF2490 PF10677.9 AHV92481.1 - 8.8e-08 32.3 5.5 0.005 16.8 0.1 4.0 2 2 1 3 3 3 3 Protein of unknown function (DUF2490) OMP_b-brl PF13505.6 AHV92481.1 - 1.2e-06 28.8 24.4 0.00067 19.8 2.2 3.9 1 1 1 2 2 2 2 Outer membrane protein beta-barrel domain OMP_b-brl_3 PF14905.6 AHV92481.1 - 0.0024 16.9 1.4 0.25 10.3 0.2 2.7 1 1 1 2 2 2 2 Outer membrane protein beta-barrel family OmpA_membrane PF01389.17 AHV92481.1 - 0.0066 16.2 2.6 3 7.5 0.0 3.5 3 0 0 3 3 3 1 OmpA-like transmembrane domain Porin_OmpG_1_2 PF16946.5 AHV92481.1 - 0.037 13.3 0.3 0.26 10.5 0.0 2.2 2 1 1 3 3 3 0 OMPG-porin 1 family AMA-1 PF02430.15 AHV92481.1 - 0.12 11.4 0.0 0.17 10.8 0.0 1.1 1 0 0 1 1 1 0 Apical membrane antigen 1 HTH_IclR PF09339.10 AHV92482.1 - 9.5e-17 60.5 0.1 9.5e-17 60.5 0.1 2.9 4 0 0 4 4 4 1 IclR helix-turn-helix domain IclR PF01614.18 AHV92482.1 - 5.7e-08 32.7 0.1 1.7e-07 31.1 0.0 1.8 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_24 PF13412.6 AHV92482.1 - 0.0026 17.3 0.0 0.0072 15.9 0.0 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 AHV92482.1 - 0.03 14.2 0.2 0.39 10.7 0.0 2.9 3 1 0 3 3 3 0 MarR family HTH_Crp_2 PF13545.6 AHV92482.1 - 0.035 14.1 0.0 0.089 12.8 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_36 PF13730.6 AHV92482.1 - 0.11 12.5 0.0 0.23 11.4 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain MarR PF01047.22 AHV92482.1 - 0.19 11.7 0.0 0.54 10.2 0.0 1.8 1 0 0 1 1 1 0 MarR family Trans_reg_C PF00486.28 AHV92483.1 - 0.0096 16.0 0.0 0.12 12.4 0.0 2.4 1 1 0 1 1 1 1 Transcriptional regulatory protein, C terminal Ribosomal_L27A PF00828.19 AHV92484.1 - 3.5e-30 105.3 1.6 4.6e-30 104.9 1.6 1.2 1 0 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Neuropeptide_S PF14993.6 AHV92484.1 - 0.054 13.3 0.2 0.098 12.5 0.2 1.4 1 0 0 1 1 1 0 Neuropeptide S precursor protein NLPC_P60 PF00877.19 AHV92486.1 - 6.7e-32 109.7 0.0 8.6e-32 109.3 0.0 1.1 1 0 0 1 1 1 1 NlpC/P60 family Peptidase_C92 PF05708.12 AHV92486.1 - 3.8e-06 27.1 0.0 0.026 14.6 0.0 2.2 1 1 1 2 2 2 2 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family CHAP PF05257.16 AHV92486.1 - 0.0037 17.8 0.0 0.0056 17.2 0.0 1.4 1 0 0 1 1 1 1 CHAP domain DUF1175 PF06672.11 AHV92486.1 - 0.0053 16.5 0.0 0.075 12.7 0.0 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF1175) LRAT PF04970.13 AHV92486.1 - 0.0076 16.6 0.0 0.012 15.9 0.0 1.3 1 0 0 1 1 1 1 Lecithin retinol acyltransferase Amidase_6 PF12671.7 AHV92486.1 - 0.14 12.2 0.0 0.2 11.8 0.0 1.2 1 0 0 1 1 1 0 Putative amidase domain DsbB PF02600.16 AHV92487.1 - 1.1e-12 48.6 4.7 1.2e-12 48.5 4.7 1.0 1 0 0 1 1 1 1 Disulfide bond formation protein DsbB YrvL PF14184.6 AHV92487.1 - 0.0007 19.7 2.8 0.00095 19.3 2.8 1.2 1 0 0 1 1 1 1 Regulatory protein YrvL Pantoate_transf PF02548.15 AHV92488.1 - 2.1e-89 299.4 0.6 2.3e-89 299.2 0.6 1.0 1 0 0 1 1 1 1 Ketopantoate hydroxymethyltransferase DHDPS PF00701.22 AHV92491.1 - 1e-101 339.5 0.0 1.2e-101 339.3 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family ACR_tran PF00873.19 AHV92492.1 - 1e-158 530.0 0.3 1.2e-158 529.8 0.3 1.0 1 0 0 1 1 1 1 AcrB/AcrD/AcrF family SecD_SecF PF02355.16 AHV92492.1 - 7.4e-06 25.5 8.7 1.3e-05 24.7 8.7 1.3 1 0 0 1 1 1 1 Protein export membrane protein DUF2070 PF09843.9 AHV92492.1 - 3.9 5.7 9.9 8.7 4.5 9.9 1.5 1 1 0 1 1 1 0 Predicted membrane protein (DUF2070) Phage_integrase PF00589.22 AHV92493.1 - 1.6e-20 73.6 0.2 6.2e-20 71.7 0.0 1.8 2 0 0 2 2 2 1 Phage integrase family Arm-DNA-bind_3 PF13356.6 AHV92493.1 - 1.8e-12 47.4 1.8 1.9e-12 47.4 0.2 1.9 2 0 0 2 2 2 1 Arm DNA-binding domain Phage_int_SAM_3 PF14659.6 AHV92493.1 - 1.5e-10 41.2 0.0 2.7e-10 40.4 0.0 1.4 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Methyltransf_28 PF02636.17 AHV92494.1 - 5.3e-53 180.3 0.0 6.7e-53 180.0 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_12 PF08242.12 AHV92494.1 - 0.0002 22.0 0.0 0.00043 21.0 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_33 PF10017.9 AHV92494.1 - 0.05 12.7 0.0 0.089 11.9 0.0 1.3 1 0 0 1 1 1 0 Histidine-specific methyltransferase, SAM-dependent Methyltransf_25 PF13649.6 AHV92494.1 - 0.072 13.8 0.0 0.16 12.7 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain BPD_transp_2 PF02653.16 AHV92495.1 - 3e-15 56.1 16.6 3.9e-15 55.8 16.6 1.2 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component S_4TM PF18159.1 AHV92495.1 - 9 5.5 6.2 0.85 8.9 0.4 2.0 2 0 0 2 2 2 0 SMODS-associating 4TM effector domain ABC_tran PF00005.27 AHV92496.1 - 1.9e-26 93.2 0.0 2.6e-26 92.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.8 AHV92496.1 - 9e-09 35.1 0.2 1.5e-08 34.4 0.2 1.4 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_21 PF13304.6 AHV92496.1 - 1.6e-06 28.2 1.4 0.0086 15.9 0.1 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 AHV92496.1 - 0.00043 20.2 0.7 0.00084 19.3 0.2 1.6 2 0 0 2 2 2 1 RsgA GTPase AAA_29 PF13555.6 AHV92496.1 - 0.0015 18.2 0.1 0.0034 17.1 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain MMR_HSR1 PF01926.23 AHV92496.1 - 0.0035 17.4 1.2 0.0077 16.3 0.6 1.8 2 0 0 2 2 2 1 50S ribosome-binding GTPase AAA_16 PF13191.6 AHV92496.1 - 0.0058 17.0 2.1 0.024 15.0 2.1 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.6 AHV92496.1 - 0.013 15.0 0.7 0.024 14.2 0.1 1.7 2 0 0 2 2 2 0 AAA domain Dynamin_N PF00350.23 AHV92496.1 - 0.019 15.0 0.2 0.071 13.2 0.7 1.6 2 0 0 2 2 2 0 Dynamin family AAA_18 PF13238.6 AHV92496.1 - 0.027 15.0 0.0 0.043 14.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 AHV92496.1 - 0.031 14.0 2.5 0.18 11.5 2.5 2.0 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.15 AHV92496.1 - 0.031 14.2 0.0 0.072 13.0 0.0 1.5 2 0 0 2 2 2 0 Rad17 P-loop domain AAA_33 PF13671.6 AHV92496.1 - 0.037 14.2 0.0 0.11 12.7 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA_27 PF13514.6 AHV92496.1 - 0.048 13.2 0.0 0.079 12.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 AHV92496.1 - 0.077 13.5 0.1 0.11 12.9 0.1 1.2 1 0 0 1 1 1 0 AAA domain SMC_N PF02463.19 AHV92496.1 - 0.089 12.2 0.6 0.23 10.9 0.3 1.7 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain MeaB PF03308.16 AHV92496.1 - 0.095 11.7 0.1 0.16 11.0 0.1 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_22 PF13401.6 AHV92496.1 - 0.13 12.6 0.1 0.33 11.2 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.6 AHV92496.1 - 0.13 12.0 0.1 0.18 11.5 0.1 1.1 1 0 0 1 1 1 0 AAA ATPase domain AAA_28 PF13521.6 AHV92496.1 - 0.13 12.5 0.3 0.3 11.3 0.3 1.6 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 AHV92496.1 - 0.14 11.4 0.1 0.25 10.6 0.1 1.3 1 0 0 1 1 1 0 Zeta toxin CoA_transf_3 PF02515.17 AHV92497.1 - 4.5e-79 266.2 0.0 1.5e-78 264.5 0.0 1.8 1 1 0 1 1 1 1 CoA-transferase family III Gate PF07670.14 AHV92498.1 - 1.3e-12 48.0 6.1 6.8e-08 32.8 0.2 3.9 3 2 1 4 4 4 2 Nucleoside recognition DegT_DnrJ_EryC1 PF01041.17 AHV92500.1 - 3e-138 461.1 0.0 3.4e-138 460.9 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 AHV92500.1 - 3.3e-06 25.9 0.0 5.2e-06 25.2 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.21 AHV92500.1 - 7e-06 25.4 0.0 1.1e-05 24.8 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 AHV92500.1 - 0.00055 19.3 0.0 0.0014 18.0 0.0 1.6 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 AHV92500.1 - 0.0012 17.9 0.0 0.0016 17.5 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V HAGH_C PF16123.5 AHV92501.1 - 4e-26 91.3 0.0 5.6e-26 90.9 0.0 1.2 1 0 0 1 1 1 1 Hydroxyacylglutathione hydrolase C-terminus Lactamase_B PF00753.27 AHV92501.1 - 1.3e-23 84.0 3.7 2.2e-23 83.3 3.7 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 AHV92501.1 - 3.8e-06 26.6 1.8 8.3e-06 25.5 0.9 2.1 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 AHV92501.1 - 0.037 13.9 0.2 0.07 13.0 0.2 1.6 1 1 0 1 1 1 0 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 AHV92501.1 - 0.22 11.0 0.0 0.33 10.3 0.0 1.2 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain TerC PF03741.16 AHV92502.1 - 6.3e-47 159.6 12.6 8.8e-47 159.1 12.6 1.2 1 0 0 1 1 1 1 Integral membrane protein TerC family CorC_HlyC PF03471.17 AHV92502.1 - 1.7e-22 79.2 0.0 9.8e-22 76.8 0.0 2.3 2 0 0 2 2 2 1 Transporter associated domain CBS PF00571.28 AHV92502.1 - 1.5e-05 25.3 0.7 0.00038 20.8 0.1 2.9 2 0 0 2 2 2 1 CBS domain Aminotran_4 PF01063.19 AHV92503.1 - 1.4e-32 113.4 0.0 1.7e-32 113.1 0.0 1.0 1 0 0 1 1 1 1 Amino-transferase class IV Sel_put PF04328.13 AHV92504.1 - 2.9e-27 94.5 1.1 3.1e-27 94.4 1.1 1.0 1 0 0 1 1 1 1 Selenoprotein, putative Aldedh PF00171.22 AHV92506.1 - 3.6e-141 470.8 0.0 4.1e-141 470.7 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.14 AHV92506.1 - 0.026 13.6 0.0 0.041 12.9 0.0 1.2 1 0 0 1 1 1 0 Acyl-CoA reductase (LuxC) HAD PF12710.7 AHV92507.1 - 1.8e-08 35.0 0.1 3.5e-08 34.1 0.1 1.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.12 AHV92507.1 - 0.0098 15.3 0.0 0.072 12.5 0.0 1.9 1 1 0 1 1 1 1 Putative Phosphatase Helicase_C_2 PF13307.6 AHV92508.1 - 4.3e-34 118.1 0.0 6.9e-34 117.5 0.0 1.3 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD PF00270.29 AHV92508.1 - 1.2e-07 31.6 3.2 0.00066 19.5 0.2 2.8 3 0 0 3 3 3 2 DEAD/DEAH box helicase DEAD_2 PF06733.15 AHV92508.1 - 9.2e-05 22.1 0.0 0.00013 21.6 0.0 1.3 1 0 0 1 1 1 1 DEAD_2 ResIII PF04851.15 AHV92508.1 - 0.00042 20.4 0.1 0.57 10.2 0.0 2.2 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit Helicase_C PF00271.31 AHV92508.1 - 0.001 19.4 0.0 0.0036 17.6 0.0 2.0 1 1 0 1 1 1 1 Helicase conserved C-terminal domain Glyco_tran_10_N PF17039.5 AHV92508.1 - 0.0069 16.8 0.6 0.052 14.0 0.1 2.2 2 0 0 2 2 2 1 Fucosyltransferase, N-terminal AAA_19 PF13245.6 AHV92508.1 - 0.035 14.4 0.5 17 5.7 0.0 3.0 3 0 0 3 3 3 0 AAA domain COX5A PF02284.16 AHV92508.1 - 0.096 12.7 0.0 6 6.9 0.0 2.4 2 0 0 2 2 2 0 Cytochrome c oxidase subunit Va Aminotran_1_2 PF00155.21 AHV92509.1 - 2.8e-43 148.5 0.0 3.3e-43 148.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DUF2555 PF10742.9 AHV92509.1 - 0.14 12.0 0.1 4.1 7.3 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2555) BPD_transp_2 PF02653.16 AHV92510.1 - 0.00085 18.6 6.0 0.001 18.3 6.0 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component PrpF PF04303.13 AHV92512.1 - 2.4e-114 382.2 0.0 2.8e-114 382.0 0.0 1.0 1 0 0 1 1 1 1 PrpF protein Secretin PF00263.21 AHV92513.1 - 3.6e-05 23.5 0.0 6.1e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 Bacterial type II and III secretion system protein EamA PF00892.20 AHV92514.1 - 4.6e-14 52.8 38.9 6.6e-08 32.8 14.5 2.0 2 0 0 2 2 2 2 EamA-like transporter family DUF2868 PF11067.8 AHV92515.1 - 2.8e-73 247.2 21.2 2.8e-73 247.2 21.2 2.1 3 0 0 3 3 3 1 Protein of unknown function (DUF2868) HTH_18 PF12833.7 AHV92516.1 - 4.7e-19 68.4 3.2 4.7e-19 68.4 3.2 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_AraC PF00165.23 AHV92516.1 - 2.4e-12 46.6 0.0 1.8e-07 31.1 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family IcmF-related PF06761.12 AHV92516.1 - 0.012 15.1 0.6 0.018 14.5 0.6 1.3 1 0 0 1 1 1 0 Intracellular multiplication and human macrophage-killing HTH_31 PF13560.6 AHV92516.1 - 0.59 10.5 8.5 1.7 9.0 0.3 3.1 3 0 0 3 3 3 0 Helix-turn-helix domain LprI PF07007.12 AHV92517.1 - 5.5e-08 33.4 1.5 5.5e-08 33.4 1.5 1.4 2 0 0 2 2 2 1 Lysozyme inhibitor LprI RNA_helicase PF00910.22 AHV92517.1 - 0.076 13.4 0.0 0.078 13.4 0.0 1.1 1 0 0 1 1 1 0 RNA helicase LemA PF04011.12 AHV92518.1 - 4.5e-54 182.4 0.9 5.3e-54 182.1 0.9 1.1 1 0 0 1 1 1 1 LemA family PG_binding_1 PF01471.18 AHV92518.1 - 0.043 14.0 2.3 2.8 8.2 0.0 3.1 4 0 0 4 4 4 0 Putative peptidoglycan binding domain DUF802 PF05650.11 AHV92518.1 - 1.3 9.6 9.6 2.1 8.9 1.3 2.9 3 1 0 3 3 3 0 Domain of unknown function (DUF802) MNHE PF01899.16 AHV92519.1 - 1.6e-37 128.5 0.7 2e-37 128.2 0.7 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit LysR_substrate PF03466.20 AHV92520.1 - 1.9e-35 122.2 3.1 2.9e-35 121.5 3.1 1.3 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 AHV92520.1 - 2.4e-20 72.2 0.5 5e-20 71.2 0.5 1.6 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family LZ_Tnp_IS481 PF13011.6 AHV92520.1 - 0.024 15.2 0.7 0.44 11.1 0.2 2.6 2 1 0 2 2 2 0 leucine-zipper of insertion element IS481 P22_Cro PF14549.6 AHV92520.1 - 0.071 13.0 0.1 0.24 11.3 0.0 1.9 2 0 0 2 2 2 0 DNA-binding transcriptional regulator Cro Enolase_C PF00113.22 AHV92521.1 - 6e-131 436.1 0.1 7.3e-131 435.8 0.1 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.16 AHV92521.1 - 1.4e-56 190.3 0.1 2.2e-56 189.6 0.1 1.4 1 0 0 1 1 1 1 Enolase, N-terminal domain MAAL_C PF07476.11 AHV92521.1 - 1.4e-05 24.4 0.1 2.1e-05 23.8 0.1 1.2 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase C-terminus MR_MLE_C PF13378.6 AHV92521.1 - 8.1e-05 22.3 0.0 0.00011 21.8 0.0 1.3 1 0 0 1 1 1 1 Enolase C-terminal domain-like DctQ PF04290.12 AHV92523.1 - 2.8e-30 104.9 12.9 2.8e-30 104.9 12.9 1.2 1 1 0 1 1 1 1 Tripartite ATP-independent periplasmic transporters, DctQ component DUF2231 PF09990.9 AHV92523.1 - 0.12 12.8 10.7 0.26 11.7 1.1 2.6 1 1 1 2 2 2 0 Predicted membrane protein (DUF2231) FtsX PF02687.21 AHV92523.1 - 0.48 10.9 10.1 0.28 11.7 2.8 2.2 2 0 0 2 2 2 0 FtsX-like permease family Abhydrolase_9_N PF15420.6 AHV92523.1 - 3.8 7.5 13.8 3.6 7.6 9.8 2.1 1 1 1 2 2 2 0 Alpha/beta-hydrolase family N-terminus TctB PF07331.11 AHV92523.1 - 4.5 7.6 11.8 1.6 9.0 7.4 2.0 1 1 1 2 2 2 0 Tripartite tricarboxylate transporter TctB family Methyltransf_33 PF10017.9 AHV92524.1 - 5.9e-86 288.4 0.0 6.5e-86 288.3 0.0 1.0 1 0 0 1 1 1 1 Histidine-specific methyltransferase, SAM-dependent Methyltransf_25 PF13649.6 AHV92524.1 - 0.0025 18.5 0.0 0.0071 17.0 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain AbiJ_NTD5 PF18865.1 AHV92524.1 - 0.02 14.7 0.4 0.04 13.7 0.4 1.4 1 0 0 1 1 1 0 AbiJ N-terminal domain 5 Ribosomal_L16 PF00252.18 AHV92525.1 - 1.3e-17 64.1 0.0 1.4e-17 63.9 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e TonB_dep_Rec PF00593.24 AHV92526.1 - 1.7e-64 219.4 32.5 6.9e-63 214.1 24.7 2.0 1 1 1 2 2 2 2 TonB dependent receptor Plug PF07715.15 AHV92526.1 - 2.4e-11 44.1 0.2 6.3e-11 42.8 0.2 1.8 1 0 0 1 1 1 1 TonB-dependent Receptor Plug Domain OMP_b-brl_3 PF14905.6 AHV92526.1 - 4.4e-05 22.7 0.1 0.001 18.2 0.0 2.2 2 0 0 2 2 2 1 Outer membrane protein beta-barrel family YchF-GTPase_C PF06071.13 AHV92527.1 - 1.5e-39 134.0 0.1 2.9e-39 133.1 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF933) MMR_HSR1 PF01926.23 AHV92527.1 - 2e-22 79.4 0.0 3.5e-22 78.6 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 AHV92527.1 - 1.6e-08 34.2 0.1 7.3e-08 32.1 0.0 2.1 2 1 0 2 2 2 1 Ferrous iron transport protein B Dynamin_N PF00350.23 AHV92527.1 - 0.048 13.7 0.0 4.5 7.3 0.0 2.6 1 1 0 1 1 1 0 Dynamin family AAA_18 PF13238.6 AHV92527.1 - 0.14 12.7 0.0 0.92 10.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain Rhodanese PF00581.20 AHV92528.1 - 5.5e-17 62.2 0.0 7.2e-17 61.9 0.0 1.2 1 0 0 1 1 1 1 Rhodanese-like domain ADH_zinc_N PF00107.26 AHV92529.1 - 6.2e-27 94.1 1.4 9.3e-27 93.6 1.4 1.2 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 AHV92529.1 - 5.6e-23 82.5 0.1 1.2e-22 81.4 0.1 1.5 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_N PF08240.12 AHV92529.1 - 4.6e-08 32.9 0.3 1.2e-06 28.4 0.1 2.5 2 1 1 3 3 3 1 Alcohol dehydrogenase GroES-like domain EIIA-man PF03610.16 AHV92529.1 - 0.14 12.4 0.1 0.26 11.5 0.1 1.5 1 0 0 1 1 1 0 PTS system fructose IIA component GTP_EFTU PF00009.27 AHV92530.1 - 7e-67 224.7 0.0 1e-66 224.2 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 AHV92530.1 - 5.1e-48 161.9 0.2 9.8e-48 160.9 0.2 1.5 1 0 0 1 1 1 1 Elongation factor G, domain IV EFG_II PF14492.6 AHV92530.1 - 3.1e-35 120.1 0.1 7.2e-35 118.9 0.1 1.7 1 0 0 1 1 1 1 Elongation Factor G, domain II EFG_C PF00679.24 AHV92530.1 - 4e-32 110.1 0.1 1e-31 108.8 0.1 1.8 1 0 0 1 1 1 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.25 AHV92530.1 - 9.7e-16 57.9 0.0 2.3e-15 56.7 0.0 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 2 RF3_C PF16658.5 AHV92530.1 - 5.8e-07 29.4 0.2 1.3e-06 28.3 0.2 1.5 1 0 0 1 1 1 1 Class II release factor RF3, C-terminal domain MMR_HSR1 PF01926.23 AHV92530.1 - 0.04 14.0 0.0 0.097 12.8 0.0 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase Asp_Arg_Hydrox PF05118.15 AHV92531.1 - 3.8e-47 160.0 0.0 5.5e-47 159.5 0.0 1.2 1 0 0 1 1 1 1 Aspartyl/Asparaginyl beta-hydroxylase Cupin_2 PF07883.11 AHV92531.1 - 0.014 15.1 0.0 0.31 10.8 0.0 2.2 2 0 0 2 2 2 0 Cupin domain AMP-binding PF00501.28 AHV92532.1 - 8.9e-94 314.5 0.0 1.2e-93 314.0 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 AHV92532.1 - 4.7e-28 98.0 0.8 1.3e-27 96.6 0.8 1.8 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 AHV92532.1 - 2.2e-20 72.3 0.7 4.4e-20 71.4 0.3 1.8 2 0 0 2 2 2 1 Acetyl-coenzyme A synthetase N-terminus MFS_1 PF07690.16 AHV92533.1 - 4.9e-19 68.5 32.3 4.9e-19 68.5 32.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Acatn PF13000.7 AHV92533.1 - 2.4e-11 42.9 8.1 4.6e-08 32.0 1.2 2.7 2 1 1 3 3 3 2 Acetyl-coenzyme A transporter 1 DUF1173 PF06666.11 AHV92533.1 - 0.13 11.2 2.6 0.17 10.8 2.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1173) FCD PF07729.12 AHV92534.1 - 6.9e-21 75.0 12.9 2e-20 73.5 12.5 1.9 2 1 0 2 2 2 1 FCD domain GntR PF00392.21 AHV92534.1 - 1.3e-14 53.6 2.1 1.6e-14 53.3 0.0 2.1 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_24 PF13412.6 AHV92534.1 - 4.6e-08 32.5 0.0 8.9e-08 31.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 AHV92534.1 - 2.7e-06 27.3 0.0 6e-06 26.1 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_11 PF08279.12 AHV92534.1 - 2.9e-06 27.1 0.0 6.6e-06 26.0 0.0 1.6 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.7 AHV92534.1 - 4e-06 26.6 1.0 1.7e-05 24.6 0.1 2.3 2 0 0 2 2 2 1 MarR family Rrf2 PF02082.20 AHV92534.1 - 9.8e-05 22.6 0.0 0.0002 21.6 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator TrmB PF01978.19 AHV92534.1 - 0.00056 19.7 0.0 0.0012 18.7 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.19 AHV92534.1 - 0.00063 19.9 0.0 0.0014 18.8 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_AsnC-type PF13404.6 AHV92534.1 - 0.0017 18.2 0.1 0.005 16.7 0.1 1.9 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_46 PF15977.5 AHV92534.1 - 0.0038 17.2 0.0 0.0072 16.3 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA binding HTH_27 PF13463.6 AHV92534.1 - 0.0055 17.2 0.0 0.016 15.7 0.0 1.8 2 0 0 2 2 1 1 Winged helix DNA-binding domain MarR PF01047.22 AHV92534.1 - 0.0056 16.6 0.0 0.012 15.6 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_23 PF13384.6 AHV92534.1 - 0.0067 16.2 0.1 0.044 13.6 0.0 2.5 2 1 0 2 2 2 1 Homeodomain-like domain Sigma70_r4 PF04545.16 AHV92534.1 - 0.0073 15.8 0.0 0.017 14.7 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_10 PF04967.12 AHV92534.1 - 0.011 15.5 0.1 0.084 12.7 0.0 2.4 3 0 0 3 3 2 0 HTH DNA binding domain HTH_20 PF12840.7 AHV92534.1 - 0.012 15.6 0.3 0.037 14.1 0.0 2.0 2 0 0 2 2 1 0 Helix-turn-helix domain HTH_5 PF01022.20 AHV92534.1 - 0.016 15.0 0.0 0.028 14.3 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family FaeA PF04703.12 AHV92534.1 - 0.022 15.1 0.0 11 6.5 0.0 2.5 2 0 0 2 2 2 0 FaeA-like protein HTH_CodY PF08222.11 AHV92534.1 - 0.045 13.3 0.0 0.091 12.3 0.0 1.5 1 0 0 1 1 1 0 CodY helix-turn-helix domain HTH_28 PF13518.6 AHV92534.1 - 0.05 13.7 0.1 0.25 11.5 0.0 2.3 2 0 0 2 2 1 0 Helix-turn-helix domain HTH_IclR PF09339.10 AHV92534.1 - 0.053 13.3 1.1 0.2 11.5 0.0 2.5 2 0 0 2 2 2 0 IclR helix-turn-helix domain LexA_DNA_bind PF01726.16 AHV92534.1 - 0.08 12.7 0.0 0.14 11.9 0.0 1.4 1 0 0 1 1 1 0 LexA DNA binding domain DUF5403 PF17395.2 AHV92534.1 - 0.46 10.8 0.1 0.46 10.8 0.1 2.3 2 0 0 2 2 2 0 Family of unknown function (DUF5403) TOBE_2 PF08402.10 AHV92535.1 - 1.4e-09 37.9 0.1 2.6e-09 37.1 0.1 1.4 1 0 0 1 1 1 1 TOBE domain GARS_N PF02844.15 AHV92536.1 - 6.2e-06 26.9 0.0 7.2e-06 26.7 0.0 1.0 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain MinE PF03776.14 AHV92537.1 - 1.1e-11 44.5 1.8 1.2e-11 44.4 1.8 1.0 1 0 0 1 1 1 1 Septum formation topological specificity factor MinE Lsm_C PF14894.6 AHV92537.1 - 0.08 12.7 0.4 0.088 12.6 0.4 1.1 1 0 0 1 1 1 0 Lsm C-terminal MarC PF01914.17 AHV92538.1 - 1.9e-39 135.2 9.6 2.2e-39 135.0 9.6 1.0 1 0 0 1 1 1 1 MarC family integral membrane protein Sterol-sensing PF12349.8 AHV92538.1 - 0.0031 17.4 0.6 0.0031 17.4 0.6 2.5 2 1 0 2 2 2 1 Sterol-sensing domain of SREBP cleavage-activation TerC PF03741.16 AHV92538.1 - 0.0043 16.7 9.3 0.012 15.3 9.3 1.6 1 1 0 1 1 1 1 Integral membrane protein TerC family HPP PF04982.13 AHV92538.1 - 0.75 10.0 12.6 0.092 12.9 3.7 2.6 1 1 2 3 3 3 0 HPP family RseC_MucC PF04246.12 AHV92538.1 - 2.2 8.2 6.0 3.1 7.8 0.4 2.3 2 0 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC DUF4149 PF13664.6 AHV92538.1 - 2.8 8.3 10.4 4.7 7.6 1.0 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4149) DUF4131 PF13567.6 AHV92538.1 - 6.1 6.5 10.8 0.66 9.6 1.7 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) TGT PF01702.18 AHV92539.1 - 2.4e-150 500.6 0.0 2.9e-150 500.3 0.0 1.0 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase Peptidase_M20 PF01546.28 AHV92540.1 - 1.6e-06 27.9 0.1 2.3e-06 27.4 0.1 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.17 AHV92540.1 - 0.027 14.2 0.0 0.033 13.9 0.0 1.1 1 0 0 1 1 1 0 Peptidase family M28 tRNA-synt_1c PF00749.21 AHV92541.1 - 2.6e-27 95.6 0.0 4.2e-27 94.9 0.0 1.3 1 1 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain Flavin_Reduct PF01613.18 AHV92542.1 - 3.8e-26 92.0 0.0 4.6e-26 91.7 0.0 1.1 1 0 0 1 1 1 1 Flavin reductase like domain rve PF00665.26 AHV92543.1 - 1.4e-28 99.5 0.0 2.2e-28 98.8 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.6 AHV92543.1 - 1.6e-25 88.6 0.9 3.5e-25 87.6 0.9 1.6 1 0 0 1 1 1 1 Integrase core domain HTH_21 PF13276.6 AHV92543.1 - 9.3e-05 22.5 0.5 0.00022 21.3 0.4 1.7 2 0 0 2 2 2 1 HTH-like domain rve_2 PF13333.6 AHV92543.1 - 0.027 14.7 2.3 0.043 14.0 0.1 2.4 2 0 0 2 2 2 0 Integrase core domain DNA_gyraseB PF00204.25 AHV92544.1 - 9.7e-32 109.8 0.0 1.7e-31 109.1 0.0 1.3 1 0 0 1 1 1 1 DNA gyrase B DNA_gyraseB_C PF00986.21 AHV92544.1 - 7.4e-25 86.9 0.1 1.3e-24 86.1 0.1 1.4 1 0 0 1 1 1 1 DNA gyrase B subunit, carboxyl terminus HATPase_c PF02518.26 AHV92544.1 - 1.2e-17 64.4 0.0 2.3e-17 63.5 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Toprim PF01751.22 AHV92544.1 - 7.1e-11 42.2 0.0 1.3e-10 41.4 0.0 1.5 1 0 0 1 1 1 1 Toprim domain HATPase_c_3 PF13589.6 AHV92544.1 - 0.0026 17.6 0.0 0.005 16.7 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AsmA PF05170.14 AHV92545.1 - 1.7e-15 56.9 0.1 1.8e-15 56.8 0.1 1.0 1 0 0 1 1 1 1 AsmA family SBP_bac_3 PF00497.20 AHV92546.1 - 2.2e-40 138.5 0.1 2.9e-40 138.1 0.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Lig_chan-Glu_bd PF10613.9 AHV92546.1 - 0.11 12.7 0.0 0.38 11.0 0.0 1.9 1 1 0 1 1 1 0 Ligated ion channel L-glutamate- and glycine-binding site FGGY_C PF02782.16 AHV92548.1 - 1.1e-05 25.3 0.0 1.4e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain Mob_synth_C PF06463.13 AHV92549.1 - 1.3e-34 118.9 0.0 1.8e-34 118.4 0.0 1.2 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Radical_SAM PF04055.21 AHV92549.1 - 2.7e-32 112.4 0.0 3.9e-32 111.9 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 AHV92549.1 - 1.5e-07 31.5 0.0 2.6e-07 30.8 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 AHV92549.1 - 3.6e-07 30.6 0.0 6.3e-07 29.8 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Ribosomal_S30AE PF02482.19 AHV92550.1 - 8.4e-25 87.4 0.7 1e-24 87.1 0.7 1.1 1 0 0 1 1 1 1 Sigma 54 modulation protein / S30EA ribosomal protein LysR_substrate PF03466.20 AHV92551.1 - 2.7e-43 147.8 5.8 2.7e-43 147.8 5.8 1.4 2 0 0 2 2 2 1 LysR substrate binding domain HTH_1 PF00126.27 AHV92551.1 - 4.6e-24 84.1 0.4 9.6e-24 83.1 0.4 1.6 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_30 PF13556.6 AHV92551.1 - 0.035 13.9 0.6 0.067 13.0 0.6 1.5 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain MarR_2 PF12802.7 AHV92551.1 - 0.042 13.7 0.1 0.11 12.4 0.1 1.7 1 0 0 1 1 1 0 MarR family HTH_24 PF13412.6 AHV92551.1 - 0.094 12.3 0.0 0.23 11.0 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding SGL PF08450.12 AHV92552.1 - 3e-66 223.5 0.0 3.6e-66 223.2 0.0 1.1 1 0 0 1 1 1 1 SMP-30/Gluconolactonase/LRE-like region Mtd_N PF18454.1 AHV92552.1 - 0.0067 16.4 0.2 0.58 10.2 0.0 2.4 2 0 0 2 2 2 2 Major tropism determinant N-terminal domain TctC PF03401.14 AHV92553.1 - 1.3e-88 296.7 0.1 1.6e-88 296.4 0.1 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor Na_H_antiport_1 PF06965.12 AHV92554.1 - 1.8e-146 487.9 27.5 2e-146 487.7 27.5 1.0 1 0 0 1 1 1 1 Na+/H+ antiporter 1 7tm_7 PF08395.12 AHV92555.1 - 0.017 14.3 3.2 0.019 14.2 3.2 1.1 1 0 0 1 1 1 0 7tm Chemosensory receptor DUF3042 PF11240.8 AHV92555.1 - 0.03 14.3 2.2 0.03 14.3 2.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3042) PRD1_DD PF11087.8 AHV92555.1 - 0.051 13.3 0.0 0.12 12.1 0.0 1.6 1 0 0 1 1 1 0 PRD1 phage membrane DNA delivery Metallothio_Pro PF02069.16 AHV92556.1 - 0.013 15.7 0.0 0.017 15.3 0.0 1.1 1 0 0 1 1 1 0 Prokaryotic metallothionein XAF1_C PF18608.1 AHV92556.1 - 0.033 13.7 0.1 0.052 13.1 0.1 1.4 1 0 0 1 1 1 0 XIAP-associated factor 1 C-terminal domain SBP_bac_6 PF13343.6 AHV92557.1 - 7.4e-28 97.6 0.0 1.1e-27 97.0 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 AHV92557.1 - 6.3e-23 81.7 0.3 1.4e-22 80.6 0.3 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 AHV92557.1 - 4.5e-16 59.5 0.8 7.2e-16 58.8 0.8 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 AHV92557.1 - 2.2e-10 41.0 4.2 3.1e-10 40.5 4.2 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Phosphonate-bd PF12974.7 AHV92557.1 - 3.2e-05 23.6 0.0 5.2e-05 23.0 0.0 1.5 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein MFS_4 PF06779.14 AHV92558.1 - 1.3e-14 54.3 14.5 1.4e-14 54.1 14.5 1.0 1 0 0 1 1 1 1 Uncharacterised MFS-type transporter YbfB MFS_1 PF07690.16 AHV92558.1 - 0.0012 17.8 18.3 0.0014 17.6 18.3 1.1 1 0 0 1 1 1 1 Major Facilitator Superfamily ABC_trans_CmpB PF06541.11 AHV92558.1 - 9.6 6.4 7.8 67 3.7 7.3 2.3 1 1 0 1 1 1 0 Putative ABC-transporter type IV DUF2007 PF09413.10 AHV92559.1 - 8.4e-08 32.3 0.0 1.1e-07 31.9 0.0 1.1 1 0 0 1 1 1 1 Putative prokaryotic signal transducing protein zf-ribbon_3 PF13248.6 AHV92559.1 - 0.00024 20.4 2.2 0.00024 20.4 2.2 1.5 2 0 0 2 2 2 1 zinc-ribbon domain DZR PF12773.7 AHV92559.1 - 0.00048 20.1 0.3 0.00093 19.2 0.3 1.3 1 1 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 AHV92559.1 - 0.026 14.2 2.3 0.087 12.6 2.3 1.9 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_15 PF17032.5 AHV92559.1 - 0.039 14.7 0.0 0.042 14.6 0.0 1.2 1 0 0 1 1 1 0 zinc-ribbon family zinc_ribbon_10 PF10058.9 AHV92559.1 - 0.08 12.7 0.2 0.82 9.5 0.0 2.1 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein Zn_ribbon_SprT PF17283.2 AHV92559.1 - 0.092 12.7 1.9 0.31 11.0 1.8 1.9 1 1 1 2 2 2 0 SprT-like zinc ribbon domain DUF1198 PF06711.11 AHV92559.1 - 0.23 11.5 0.0 0.3 11.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1198) zf-HYPF PF07503.12 AHV92559.1 - 0.38 10.6 6.2 8.6 6.2 0.2 3.2 2 1 1 3 3 3 0 HypF finger VATC PF18716.1 AHV92559.1 - 1.9 8.4 5.3 2.4 8.1 0.2 2.3 1 1 1 2 2 2 0 Vms1-associating treble clef domain Rubredoxin_2 PF18073.1 AHV92559.1 - 9.5 6.0 10.3 0.19 11.5 1.0 2.4 3 0 0 3 3 3 0 Rubredoxin metal binding domain Radical_SAM PF04055.21 AHV92560.1 - 2.7e-31 109.2 0.0 5.3e-31 108.2 0.0 1.5 2 0 0 2 2 2 1 Radical SAM superfamily UPF0004 PF00919.20 AHV92560.1 - 6e-31 106.4 0.0 1.1e-30 105.6 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 B12-binding PF02310.19 AHV92560.1 - 0.0078 16.3 0.2 0.068 13.2 0.0 2.4 3 0 0 3 3 3 1 B12 binding domain ClpS PF02617.17 AHV92561.1 - 2.9e-25 87.9 0.1 3.1e-25 87.7 0.1 1.0 1 0 0 1 1 1 1 ATP-dependent Clp protease adaptor protein ClpS Ribosomal_L21p PF00829.21 AHV92563.1 - 1.2e-40 137.8 4.0 1.3e-40 137.7 4.0 1.0 1 0 0 1 1 1 1 Ribosomal prokaryotic L21 protein Amidase PF01425.21 AHV92564.1 - 4.9e-84 282.9 0.2 1e-83 281.8 0.2 1.5 1 1 0 1 1 1 1 Amidase TnpB_IS66 PF05717.13 AHV92565.1 - 2.1e-26 91.8 0.0 2.4e-26 91.6 0.0 1.0 1 0 0 1 1 1 1 IS66 Orf2 like protein Polysacc_deac_1 PF01522.21 AHV92566.1 - 1.1e-07 31.8 0.0 2.9e-07 30.4 0.0 1.6 2 0 0 2 2 2 1 Polysaccharide deacetylase HTH_Tnp_1 PF01527.20 AHV92567.1 - 2.4e-15 56.6 0.0 4e-15 55.9 0.0 1.3 1 0 0 1 1 1 1 Transposase HTH_23 PF13384.6 AHV92567.1 - 1.3e-06 28.1 0.1 4.6e-06 26.3 0.0 1.9 2 1 1 3 3 3 1 Homeodomain-like domain HTH_28 PF13518.6 AHV92567.1 - 1.6e-06 28.2 0.0 2.7e-06 27.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_1_2 PF13022.6 AHV92567.1 - 8.6e-05 22.7 0.4 0.0017 18.5 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix of insertion element transposase HTH_29 PF13551.6 AHV92567.1 - 0.00017 21.5 0.1 0.00054 19.9 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn helix HTH_7 PF02796.15 AHV92567.1 - 0.0026 17.8 0.1 0.0063 16.6 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain of resolvase HTH_17 PF12728.7 AHV92567.1 - 0.0096 16.1 0.0 0.016 15.4 0.0 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain Terminase_5 PF06056.12 AHV92567.1 - 0.014 15.3 0.0 0.022 14.6 0.0 1.3 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) HTH_26 PF13443.6 AHV92567.1 - 0.016 15.7 0.0 0.046 14.2 0.0 1.7 1 1 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_24 PF13412.6 AHV92567.1 - 0.061 12.9 0.2 0.41 10.2 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_22 PF13309.6 AHV92567.1 - 0.062 13.4 0.1 0.3 11.2 0.0 1.9 2 0 0 2 2 2 0 HTH domain CENP-B_N PF04218.13 AHV92567.1 - 0.09 12.4 0.0 0.15 11.7 0.0 1.3 1 0 0 1 1 1 0 CENP-B N-terminal DNA-binding domain MarR_2 PF12802.7 AHV92567.1 - 0.093 12.6 0.0 0.18 11.7 0.0 1.5 1 0 0 1 1 1 0 MarR family Wtap PF17098.5 AHV92567.1 - 0.25 11.2 3.0 0.34 10.8 3.0 1.1 1 0 0 1 1 1 0 WTAP/Mum2p family ParD_like PF11903.8 AHV92568.1 - 2.3e-25 88.4 0.0 2.4e-25 88.4 0.0 1.0 1 0 0 1 1 1 1 ParD-like antitoxin of type II bacterial toxin-antitoxin system PTS_EIIA_2 PF00359.22 AHV92569.1 - 3.9e-31 107.9 0.0 4.6e-31 107.7 0.0 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Band_3_cyto PF07565.13 AHV92569.1 - 1.3e-07 31.7 0.0 3.2e-07 30.4 0.0 1.5 2 0 0 2 2 2 1 Band 3 cytoplasmic domain GGDEF PF00990.21 AHV92570.1 - 1.9e-36 125.3 0.0 2.9e-36 124.7 0.0 1.3 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain GAF_2 PF13185.6 AHV92570.1 - 2e-09 37.8 0.3 1.2e-08 35.3 0.0 2.3 3 0 0 3 3 3 1 GAF domain GAF PF01590.26 AHV92570.1 - 0.00014 22.5 0.0 0.00035 21.2 0.0 1.7 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.6 AHV92570.1 - 0.0032 17.8 0.0 0.0061 16.9 0.0 1.6 1 0 0 1 1 1 1 GAF domain YceI PF04264.13 AHV92571.1 - 4.6e-31 108.3 0.0 5.3e-31 108.1 0.0 1.0 1 0 0 1 1 1 1 YceI-like domain DDE_Tnp_ISL3 PF01610.17 AHV92572.1 - 7.8e-65 218.9 1.2 1.1e-64 218.4 0.3 1.6 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV92572.1 - 1.4e-11 43.6 0.1 3.6e-11 42.3 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV92572.1 - 5.3e-09 36.6 11.2 1.1e-08 35.6 11.2 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV92572.1 - 0.0056 16.7 0.2 0.016 15.3 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain SLT_L PF14718.6 AHV92572.1 - 0.016 15.3 1.5 0.016 15.3 1.5 1.8 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain NOB1_Zn_bind PF08772.11 AHV92572.1 - 0.017 15.2 0.2 1.2 9.3 0.0 2.5 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-IS66 PF13005.7 AHV92572.1 - 8.2 6.9 9.6 3.6 8.1 6.6 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Proton_antipo_M PF00361.20 AHV92573.1 - 6.1e-77 258.7 25.4 6.1e-77 258.7 25.4 1.7 2 0 0 2 2 2 1 Proton-conducting membrane transporter Oxidored_q5_N PF01059.17 AHV92573.1 - 0.00018 21.6 0.4 0.00018 21.6 0.4 3.8 4 1 0 4 4 4 1 NADH-ubiquinone oxidoreductase chain 4, amino terminus TMEM72 PF16054.5 AHV92573.1 - 1.8 8.2 14.8 1.9 8.2 9.9 2.6 2 0 0 2 2 2 0 Transmembrane protein family 72 Pyrophosphatase PF00719.19 AHV92574.1 - 1.1e-52 178.0 0.0 1.3e-52 177.8 0.0 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase DUF3089 PF11288.8 AHV92575.1 - 0.16 11.5 0.0 0.16 11.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3089) Porin_4 PF13609.6 AHV92576.1 - 9.7e-29 101.1 20.2 1.1e-28 100.9 20.2 1.0 1 0 0 1 1 1 1 Gram-negative porin Porin_1 PF00267.21 AHV92576.1 - 2.8e-07 30.3 10.9 1.7e-06 27.7 10.9 2.1 1 1 0 1 1 1 1 Gram-negative porin PseudoU_synth_2 PF00849.22 AHV92577.1 - 2.6e-29 102.4 0.0 4.2e-29 101.7 0.0 1.3 1 0 0 1 1 1 1 RNA pseudouridylate synthase S4 PF01479.25 AHV92577.1 - 2.5e-09 36.7 0.4 6.1e-09 35.5 0.3 1.7 2 0 0 2 2 2 1 S4 domain DAO PF01266.24 AHV92578.1 - 6.3e-62 210.2 4.1 7.2e-62 210.0 4.1 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 AHV92578.1 - 2e-07 31.1 0.1 5.9e-07 29.6 0.1 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 AHV92578.1 - 2.2e-07 30.4 1.5 0.00095 18.5 0.2 2.3 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.14 AHV92578.1 - 2.1e-06 27.4 0.1 4.5e-06 26.4 0.1 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FAD_binding_2 PF00890.24 AHV92578.1 - 3.7e-06 26.3 0.7 0.017 14.3 0.1 2.2 2 0 0 2 2 2 2 FAD binding domain HI0933_like PF03486.14 AHV92578.1 - 2.2e-05 23.4 0.5 0.028 13.1 0.0 2.5 3 0 0 3 3 3 2 HI0933-like protein 3HCDH_N PF02737.18 AHV92578.1 - 6.1e-05 23.0 0.1 0.00011 22.1 0.1 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_3 PF01494.19 AHV92578.1 - 6.9e-05 22.2 0.2 0.00063 19.1 0.1 2.0 2 0 0 2 2 2 1 FAD binding domain GIDA PF01134.22 AHV92578.1 - 0.00011 21.4 0.7 0.0097 15.0 0.2 2.1 2 0 0 2 2 2 1 Glucose inhibited division protein A Peptidase_C93 PF06035.11 AHV92578.1 - 0.0002 21.2 0.2 0.0004 20.2 0.0 1.5 2 0 0 2 2 1 1 Bacterial transglutaminase-like cysteine proteinase BTLCP Pyr_redox PF00070.27 AHV92578.1 - 0.00022 21.7 0.2 0.0014 19.2 0.1 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.16 AHV92578.1 - 0.00052 19.7 0.1 0.0011 18.6 0.1 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_9 PF13454.6 AHV92578.1 - 0.00058 19.9 2.9 0.014 15.4 0.1 2.7 2 1 0 2 2 2 1 FAD-NAD(P)-binding Amino_oxidase PF01593.24 AHV92578.1 - 0.0023 17.3 0.0 0.0072 15.7 0.0 1.7 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase Pyr_redox_3 PF13738.6 AHV92578.1 - 0.0028 17.0 0.1 1.5 8.0 0.1 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 AHV92578.1 - 0.019 14.2 0.1 0.033 13.4 0.1 1.4 1 0 0 1 1 1 0 Thi4 family FAD_oxidored PF12831.7 AHV92578.1 - 0.02 14.3 1.7 0.048 13.0 0.5 1.9 2 0 0 2 2 2 0 FAD dependent oxidoreductase AlaDh_PNT_C PF01262.21 AHV92578.1 - 0.027 13.8 0.1 0.047 13.0 0.1 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_Gly3P_dh_N PF01210.23 AHV92578.1 - 0.051 13.6 0.0 0.051 13.6 0.0 1.5 2 0 0 2 2 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.19 AHV92578.1 - 0.14 11.5 0.0 0.29 10.5 0.0 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 AHV92578.1 - 0.15 12.5 0.0 0.3 11.5 0.0 1.6 1 0 0 1 1 1 0 Putative NAD(P)-binding adh_short PF00106.25 AHV92578.1 - 0.19 11.2 0.1 0.51 9.8 0.1 1.7 1 0 0 1 1 1 0 short chain dehydrogenase Fe-S_assembly PF04384.13 AHV92579.1 - 4.3e-33 113.7 0.5 4.7e-33 113.6 0.5 1.0 1 0 0 1 1 1 1 Iron-sulphur cluster assembly PhzC-PhzF PF02567.16 AHV92580.1 - 1.1e-49 169.4 0.0 1.3e-49 169.2 0.0 1.0 1 0 0 1 1 1 1 Phenazine biosynthesis-like protein adh_short_C2 PF13561.6 AHV92581.1 - 2.9e-68 229.9 7.3 3.3e-68 229.8 7.3 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 AHV92581.1 - 1.5e-57 194.2 4.7 1.8e-57 194.0 4.7 1.0 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 AHV92581.1 - 6e-17 62.1 3.0 9e-17 61.6 3.0 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 AHV92581.1 - 9.8e-07 28.5 1.3 4e-06 26.5 1.3 1.9 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 AHV92581.1 - 0.00031 20.7 3.6 0.00043 20.2 3.6 1.2 1 0 0 1 1 1 1 NAD(P)H-binding ADH_zinc_N PF00107.26 AHV92581.1 - 0.019 15.0 2.3 0.019 15.0 2.3 1.8 2 0 0 2 2 2 0 Zinc-binding dehydrogenase RmlD_sub_bind PF04321.17 AHV92581.1 - 0.025 13.7 0.4 0.039 13.0 0.4 1.3 1 0 0 1 1 1 0 RmlD substrate binding domain DUF1776 PF08643.10 AHV92581.1 - 0.11 11.8 0.0 0.31 10.4 0.0 1.6 2 0 0 2 2 2 0 Fungal family of unknown function (DUF1776) Amidohydro_1 PF01979.20 AHV92582.1 - 2.5e-15 56.7 0.0 3.1e-15 56.3 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_2 PF04909.14 AHV92582.1 - 0.0014 18.5 0.0 0.0021 17.9 0.0 1.2 1 0 0 1 1 1 1 Amidohydrolase SpoVR PF04293.13 AHV92583.1 - 4.3e-28 98.2 0.0 5e-28 98.0 0.0 1.0 1 0 0 1 1 1 1 SpoVR like protein PMT_2 PF13231.6 AHV92584.1 - 0.0041 17.4 7.3 0.4 10.9 0.9 2.3 2 0 0 2 2 2 2 Dolichyl-phosphate-mannose-protein mannosyltransferase BatA PF07584.11 AHV92584.1 - 3.5 8.1 6.7 3.5 8.1 0.2 2.5 1 1 1 2 2 2 0 Aerotolerance regulator N-terminal Phage_integrase PF00589.22 AHV92586.1 - 1.4e-51 174.7 0.1 1.9e-51 174.3 0.1 1.2 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.17 AHV92586.1 - 3.8e-18 65.6 1.1 8.8e-17 61.2 0.1 3.0 2 1 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 AHV92586.1 - 1.5e-05 25.3 0.0 5.9e-05 23.5 0.0 2.0 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain DUF3435 PF11917.8 AHV92586.1 - 0.00062 18.8 0.2 0.002 17.2 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF3435) Integrase_1 PF12835.7 AHV92586.1 - 0.0087 16.2 0.1 0.015 15.4 0.1 1.4 1 0 0 1 1 1 1 Integrase Fer4 PF00037.27 AHV92587.1 - 6.4e-13 47.9 19.4 1.2e-06 28.1 4.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain NAD_binding_1 PF00175.21 AHV92587.1 - 2.8e-12 47.3 0.0 4.6e-12 46.6 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain Fer4_21 PF14697.6 AHV92587.1 - 3.9e-08 33.3 12.8 6.8e-08 32.5 12.8 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 AHV92587.1 - 1.1e-07 31.6 19.1 0.00093 19.2 6.2 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 AHV92587.1 - 4e-07 29.7 16.5 0.0023 17.9 3.2 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 AHV92587.1 - 4.6e-07 29.9 12.3 8.9e-07 29.0 12.3 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 AHV92587.1 - 9.7e-07 29.3 13.8 2.4e-06 28.0 13.8 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 AHV92587.1 - 3.7e-06 27.8 11.1 0.0064 17.4 2.3 2.5 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 AHV92587.1 - 6.7e-06 26.1 14.3 0.00035 20.6 15.9 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain FAD_binding_6 PF00970.24 AHV92587.1 - 0.00055 20.2 0.0 0.0014 19.0 0.0 1.6 2 0 0 2 2 1 1 Oxidoreductase FAD-binding domain Fer4_4 PF12800.7 AHV92587.1 - 0.0037 17.6 12.7 0.28 11.8 1.6 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 AHV92587.1 - 0.012 16.2 11.5 0.49 11.0 1.1 2.5 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 AHV92587.1 - 0.013 16.4 19.0 0.35 11.9 2.5 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_8 PF13183.6 AHV92587.1 - 0.024 15.1 13.3 0.73 10.3 3.1 2.6 1 1 2 3 3 3 0 4Fe-4S dicluster domain FAD_binding_1 PF00667.20 AHV92587.1 - 0.038 13.6 0.1 0.63 9.6 0.1 2.1 2 0 0 2 2 2 0 FAD binding domain Fer4_15 PF13459.6 AHV92587.1 - 0.043 14.5 6.2 0.24 12.2 0.2 2.9 2 0 0 2 2 2 0 4Fe-4S single cluster domain Bac_surface_Ag PF01103.23 AHV92588.1 - 1.4e-24 87.2 1.0 1.5e-24 87.1 1.0 1.1 1 0 0 1 1 1 1 Surface antigen DJ-1_PfpI PF01965.24 AHV92589.1 - 6.5e-16 58.6 0.0 3.7e-15 56.1 0.0 1.9 1 1 0 1 1 1 1 DJ-1/PfpI family ThiJ_like PF17124.5 AHV92589.1 - 4.1e-08 33.1 0.0 5.9e-08 32.6 0.0 1.2 1 0 0 1 1 1 1 ThiJ/PfpI family-like ABC_tran PF00005.27 AHV92590.1 - 1.3e-46 158.5 0.0 1.1e-21 77.7 0.0 3.0 3 0 0 3 3 2 2 ABC transporter ABC_tran_Xtn PF12848.7 AHV92590.1 - 3.3e-24 84.7 0.8 3.3e-24 84.7 0.8 2.9 2 1 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 AHV92590.1 - 2.4e-10 40.7 20.3 0.007 16.2 0.1 4.6 3 2 1 5 5 4 4 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 AHV92590.1 - 6.8e-10 38.8 0.2 0.0012 18.3 0.0 4.3 4 0 0 4 4 4 1 RecF/RecN/SMC N terminal domain ABC_tran_CTD PF16326.5 AHV92590.1 - 1.5e-08 34.7 6.3 1.3e-07 31.7 1.1 3.2 2 1 1 3 3 2 1 ABC transporter C-terminal domain MMR_HSR1 PF01926.23 AHV92590.1 - 3.6e-07 30.3 0.0 0.044 13.9 0.0 2.7 2 0 0 2 2 2 2 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 AHV92590.1 - 2.7e-06 27.4 0.3 0.056 13.3 0.0 2.5 2 0 0 2 2 2 2 RsgA GTPase AAA_29 PF13555.6 AHV92590.1 - 1.2e-05 25.0 0.3 0.14 11.9 0.1 2.6 2 0 0 2 2 2 2 P-loop containing region of AAA domain MeaB PF03308.16 AHV92590.1 - 2e-05 23.7 0.7 0.0038 16.2 0.2 2.4 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_23 PF13476.6 AHV92590.1 - 5.6e-05 23.7 6.3 0.045 14.2 0.0 3.4 3 0 0 3 3 3 2 AAA domain AAA_22 PF13401.6 AHV92590.1 - 0.00037 20.8 0.1 0.11 12.7 0.0 3.3 2 1 0 2 2 2 1 AAA domain AAA_18 PF13238.6 AHV92590.1 - 0.0012 19.4 0.0 0.052 14.1 0.0 3.1 2 0 0 2 2 2 1 AAA domain AAA_24 PF13479.6 AHV92590.1 - 0.0016 18.2 0.0 0.63 9.7 0.0 2.7 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 AHV92590.1 - 0.0016 18.6 3.2 0.25 11.5 0.0 4.2 4 1 1 5 5 5 1 AAA domain AAA_28 PF13521.6 AHV92590.1 - 0.0022 18.2 0.9 0.071 13.3 0.0 3.3 3 0 0 3 3 3 1 AAA domain NACHT PF05729.12 AHV92590.1 - 0.003 17.5 0.6 0.95 9.4 0.0 3.4 3 0 0 3 3 3 1 NACHT domain KAP_NTPase PF07693.14 AHV92590.1 - 0.0033 16.7 0.0 0.81 8.9 0.0 2.6 3 1 0 3 3 2 1 KAP family P-loop domain AAA_16 PF13191.6 AHV92590.1 - 0.0056 17.1 9.6 0.093 13.1 3.5 3.4 2 1 1 3 3 3 1 AAA ATPase domain AAA_7 PF12775.7 AHV92590.1 - 0.0081 15.7 0.0 2.4 7.7 0.0 2.2 2 0 0 2 2 2 1 P-loop containing dynein motor region DUF815 PF05673.13 AHV92590.1 - 0.0083 15.3 0.1 0.76 8.9 0.0 2.4 2 0 0 2 2 2 1 Protein of unknown function (DUF815) RNA_helicase PF00910.22 AHV92590.1 - 0.012 16.0 0.1 1.2 9.6 0.0 2.4 2 0 0 2 2 2 0 RNA helicase Ploopntkinase3 PF18751.1 AHV92590.1 - 0.015 15.2 0.1 3.4 7.6 0.0 2.6 2 0 0 2 2 2 0 P-loop Nucleotide Kinase3 PKcGMP_CC PF16808.5 AHV92590.1 - 0.044 13.6 0.4 9.4 6.2 0.2 2.6 2 0 0 2 2 2 0 Coiled-coil N-terminus of cGMP-dependent protein kinase SbcCD_C PF13558.6 AHV92590.1 - 0.047 13.9 1.9 0.49 10.7 0.0 3.3 3 1 0 3 3 3 0 Putative exonuclease SbcCD, C subunit Zeta_toxin PF06414.12 AHV92590.1 - 0.057 12.7 0.6 3.4 6.9 0.1 2.5 2 0 0 2 2 2 0 Zeta toxin AAA_15 PF13175.6 AHV92590.1 - 0.058 13.1 0.8 3.4 7.3 0.0 2.8 3 0 0 3 3 3 0 AAA ATPase domain Roc PF08477.13 AHV92590.1 - 0.11 12.7 0.1 16 5.7 0.0 2.5 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase Viral_helicase1 PF01443.18 AHV92590.1 - 0.14 11.9 0.0 0.34 10.6 0.0 1.7 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase DUF87 PF01935.17 AHV92590.1 - 0.14 12.3 0.0 0.14 12.3 0.0 3.3 4 0 0 4 4 4 0 Helicase HerA, central domain Dynamin_N PF00350.23 AHV92590.1 - 0.19 11.8 1.6 4.9 7.2 0.0 2.8 2 0 0 2 2 2 0 Dynamin family FapA PF03961.13 AHV92590.1 - 0.69 8.5 2.1 1.1 7.8 2.1 1.2 1 0 0 1 1 1 0 Flagellar Assembly Protein A AAA_17 PF13207.6 AHV92590.1 - 1 9.8 4.6 1.3 9.5 0.0 3.2 4 0 0 4 4 3 0 AAA domain AIP3 PF03915.13 AHV92590.1 - 1.6 7.8 7.1 0.059 12.5 1.2 1.6 2 0 0 2 2 2 0 Actin interacting protein 3 COG2 PF06148.11 AHV92590.1 - 1.6 8.8 3.8 0.7 10.0 0.9 2.0 2 0 0 2 2 1 0 COG (conserved oligomeric Golgi) complex component, COG2 AAA_13 PF13166.6 AHV92590.1 - 1.7 7.2 5.2 13 4.3 0.0 3.2 3 0 0 3 3 3 0 AAA domain Seryl_tRNA_N PF02403.22 AHV92590.1 - 2 8.7 9.6 0.16 12.2 2.5 2.8 2 1 1 3 3 3 0 Seryl-tRNA synthetase N-terminal domain DUF3287 PF11690.8 AHV92590.1 - 2.1 8.1 7.6 1.8 8.3 1.4 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF3287) Rx_N PF18052.1 AHV92590.1 - 2.1 8.7 8.8 0.81 10.0 3.0 2.8 2 1 0 2 2 2 0 Rx N-terminal domain DUF4407 PF14362.6 AHV92590.1 - 2.3 7.5 15.1 1.7 7.9 4.6 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF4407) HMGL-like PF00682.19 AHV92591.1 - 8.1e-78 261.6 0.0 1.3e-77 260.9 0.0 1.3 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.10 AHV92591.1 - 4.1e-27 94.7 0.0 7.2e-27 93.9 0.0 1.4 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain PTA_PTB PF01515.19 AHV92592.1 - 4.4e-45 154.4 1.6 1e-39 136.7 1.1 2.0 1 1 1 2 2 2 2 Phosphate acetyl/butaryl transferase rve PF00665.26 AHV92593.1 - 7.9e-14 51.9 0.0 3.1e-12 46.7 0.0 2.1 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 AHV92593.1 - 9.1e-12 44.9 8.6 1.8e-11 44.0 8.6 1.5 1 0 0 1 1 1 1 HTH-like domain Rhomboid_SP PF12595.8 AHV92593.1 - 0.0029 17.0 0.4 0.96 8.8 0.0 2.2 1 1 1 2 2 2 2 Rhomboid serine protease adh_short_C2 PF13561.6 AHV92594.1 - 8e-56 189.2 0.8 9.8e-56 188.9 0.8 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 AHV92594.1 - 7.8e-50 169.1 0.2 9.5e-50 168.8 0.2 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 AHV92594.1 - 6.6e-12 45.7 0.3 1.1e-11 45.0 0.3 1.3 1 0 0 1 1 1 1 KR domain GCHY-1 PF02649.14 AHV92595.1 - 1.5e-88 296.7 0.0 1.6e-88 296.5 0.0 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 DUF3987 PF13148.6 AHV92595.1 - 0.14 11.1 0.0 0.24 10.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) LysM PF01476.20 AHV92596.1 - 1.3e-10 41.2 0.0 1.7e-10 40.8 0.0 1.2 1 0 0 1 1 1 1 LysM domain DUF3568 PF12092.8 AHV92596.1 - 0.022 14.8 0.1 0.026 14.6 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3568) HTH_Tnp_1 PF01527.20 AHV92596.1 - 0.13 12.6 0.1 0.17 12.2 0.1 1.3 1 1 0 1 1 1 0 Transposase LPAM_1 PF08139.12 AHV92596.1 - 0.32 11.6 4.8 0.57 10.8 4.8 1.4 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site Ribonuc_L-PSP PF01042.21 AHV92597.1 - 9.4e-25 87.0 0.1 1e-24 86.8 0.1 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP TatC PF00902.18 AHV92598.1 - 2.6e-65 220.2 26.4 2.9e-65 220.0 26.4 1.0 1 0 0 1 1 1 1 Sec-independent protein translocase protein (TatC) Ribonuclease_P PF00825.18 AHV92599.1 - 1.8e-16 60.2 0.1 2.1e-16 60.0 0.1 1.1 1 0 0 1 1 1 1 Ribonuclease P MR_MLE_C PF13378.6 AHV92600.1 - 1.5e-44 152.2 3.5 1.5e-44 152.2 3.5 1.4 2 0 0 2 2 2 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 AHV92600.1 - 1.9e-24 86.1 0.3 4.4e-24 84.9 0.1 1.8 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MAAL_C PF07476.11 AHV92600.1 - 0.0027 16.9 0.0 0.0051 16.0 0.0 1.5 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase C-terminus TctC PF03401.14 AHV92601.1 - 3.2e-19 69.0 0.0 4.1e-19 68.7 0.0 1.1 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor Peripla_BP_6 PF13458.6 AHV92601.1 - 0.0088 15.7 0.5 0.014 15.1 0.5 1.3 1 0 0 1 1 1 1 Periplasmic binding protein SBP_bac_3 PF00497.20 AHV92601.1 - 0.045 13.2 0.0 0.076 12.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 tRNA-synt_2d PF01409.20 AHV92601.1 - 0.064 12.7 0.0 0.1 12.1 0.0 1.3 1 0 0 1 1 1 0 tRNA synthetases class II core domain (F) Hydrolase_4 PF12146.8 AHV92602.1 - 9.6e-08 31.6 0.3 9.5e-06 25.0 0.1 2.0 1 1 1 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 AHV92602.1 - 0.00018 22.2 6.3 0.075 13.6 2.1 2.1 1 1 1 2 2 2 2 Alpha/beta hydrolase family Abhydrolase_2 PF02230.16 AHV92602.1 - 0.00033 20.5 0.0 0.00047 20.0 0.0 1.2 1 0 0 1 1 1 1 Phospholipase/Carboxylesterase Abhydrolase_1 PF00561.20 AHV92602.1 - 0.00035 20.3 0.0 0.011 15.4 0.0 2.0 1 1 1 2 2 2 1 alpha/beta hydrolase fold Abhydrolase_3 PF07859.13 AHV92602.1 - 0.0017 18.2 0.1 0.0022 17.9 0.1 1.2 1 0 0 1 1 1 1 alpha/beta hydrolase fold Peptidase_S9 PF00326.21 AHV92602.1 - 0.0041 16.6 0.1 0.09 12.2 0.0 2.2 2 0 0 2 2 2 1 Prolyl oligopeptidase family Peptidase_S15 PF02129.18 AHV92602.1 - 0.015 14.9 0.0 0.022 14.4 0.0 1.3 1 0 0 1 1 1 0 X-Pro dipeptidyl-peptidase (S15 family) Thioesterase PF00975.20 AHV92602.1 - 0.024 14.7 0.1 0.03 14.4 0.1 1.2 1 0 0 1 1 1 0 Thioesterase domain FSH1 PF03959.13 AHV92602.1 - 0.037 13.7 0.0 0.055 13.1 0.0 1.3 1 0 0 1 1 1 0 Serine hydrolase (FSH1) Abhydrolase_5 PF12695.7 AHV92602.1 - 0.049 13.4 0.0 0.076 12.8 0.0 1.2 1 0 0 1 1 1 0 Alpha/beta hydrolase family Ser_hydrolase PF06821.13 AHV92602.1 - 0.15 11.9 0.0 0.37 10.6 0.0 1.6 1 1 0 1 1 1 0 Serine hydrolase MerR_2 PF13591.6 AHV92603.1 - 1.7e-10 40.6 0.0 2.1e-10 40.3 0.0 1.1 1 0 0 1 1 1 1 MerR HTH family regulatory protein MFS_1 PF07690.16 AHV92604.1 - 0.0069 15.4 1.4 0.0069 15.4 1.4 2.0 1 1 1 2 2 2 1 Major Facilitator Superfamily DUF4395 PF14340.6 AHV92604.1 - 0.025 14.9 1.8 0.03 14.6 1.8 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4395) Phage_holin_3_5 PF16085.5 AHV92604.1 - 0.031 14.4 2.4 0.041 14.0 2.3 1.3 1 1 0 1 1 1 0 Bacteriophage holin Hol, superfamily III ThrE_2 PF12821.7 AHV92604.1 - 0.074 13.2 6.8 1.4 9.1 3.5 2.3 1 1 1 2 2 2 0 Threonine/Serine exporter, ThrE TauE PF01925.19 AHV92605.1 - 1.8e-29 103.1 40.1 2.2e-29 102.8 40.1 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE RseC_MucC PF04246.12 AHV92605.1 - 0.098 12.6 0.4 0.098 12.6 0.4 3.1 3 1 1 4 4 4 0 Positive regulator of sigma(E), RseC/MucC DUF3481 PF11980.8 AHV92605.1 - 0.1 12.3 1.1 0.84 9.4 0.0 2.5 2 0 0 2 2 2 0 C-terminal domain of neuropilin glycoprotein Osmo_CC PF08946.10 AHV92606.1 - 3.9e-16 59.0 11.7 5.7e-15 55.3 11.7 2.1 1 1 0 1 1 1 1 Osmosensory transporter coiled coil Sugar_tr PF00083.24 AHV92606.1 - 1.7e-11 43.7 1.8 2.1e-11 43.4 1.8 1.1 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 AHV92606.1 - 0.00026 20.0 0.1 0.00026 20.0 0.1 1.0 1 0 0 1 1 1 1 Major Facilitator Superfamily DivIC PF04977.15 AHV92606.1 - 0.0052 16.5 0.4 0.011 15.5 0.4 1.5 1 0 0 1 1 1 1 Septum formation initiator GPS2_interact PF15784.5 AHV92606.1 - 0.018 15.5 2.4 0.028 14.8 2.4 1.4 1 1 0 1 1 1 0 G-protein pathway suppressor 2-interacting domain DUF4404 PF14357.6 AHV92606.1 - 0.023 15.3 0.7 0.033 14.8 0.7 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4404) Cas_Cmr5 PF09701.10 AHV92606.1 - 0.027 14.8 0.0 0.048 13.9 0.0 1.5 1 1 0 1 1 1 0 CRISPR-associated protein (Cas_Cmr5) TolA_bind_tri PF16331.5 AHV92606.1 - 0.041 13.9 0.3 0.065 13.3 0.3 1.2 1 0 0 1 1 1 0 TolA binding protein trimerisation DUF5082 PF16888.5 AHV92606.1 - 0.061 13.6 0.2 0.081 13.2 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5082) CHDCT2 PF08074.11 AHV92606.1 - 0.082 13.1 0.0 0.12 12.6 0.0 1.1 1 0 0 1 1 1 0 CHDCT2 (NUC038) domain Med9 PF07544.13 AHV92606.1 - 0.13 12.3 1.3 0.2 11.8 1.3 1.3 1 0 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 Prefoldin PF02996.17 AHV92606.1 - 0.18 11.7 1.4 0.25 11.2 1.4 1.2 1 0 0 1 1 1 0 Prefoldin subunit DUF4349 PF14257.6 AHV92606.1 - 1.7 8.1 7.9 0.11 11.9 2.1 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4349) DUF4118 PF13493.6 AHV92606.1 - 8.9 6.2 12.5 79 3.1 12.6 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4118) EamA PF00892.20 AHV92607.1 - 2.2e-09 37.6 8.8 2.5e-09 37.4 8.8 1.0 1 0 0 1 1 1 1 EamA-like transporter family Mg_trans_NIPA PF05653.14 AHV92607.1 - 0.33 10.0 3.9 0.11 11.6 1.2 1.6 2 0 0 2 2 2 0 Magnesium transporter NIPA ABC_tran PF00005.27 AHV92608.1 - 1.6e-34 119.4 0.0 2.2e-34 118.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 AHV92608.1 - 6.3e-10 39.1 0.1 1.9e-09 37.5 0.1 1.9 1 0 0 1 1 1 1 TOBE domain AAA_21 PF13304.6 AHV92608.1 - 2.1e-08 34.3 0.0 0.0025 17.7 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 AHV92608.1 - 0.00046 20.6 0.1 0.00081 19.8 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 AHV92608.1 - 0.0026 18.2 0.0 0.022 15.2 0.0 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) SMC_N PF02463.19 AHV92608.1 - 0.008 15.6 0.1 0.68 9.3 0.1 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_25 PF13481.6 AHV92608.1 - 0.015 14.9 0.0 0.033 13.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 AHV92608.1 - 0.019 15.5 0.0 0.033 14.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 AHV92608.1 - 0.029 14.7 0.4 0.063 13.5 0.4 1.7 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 AHV92608.1 - 0.036 14.0 0.1 0.25 11.2 0.0 2.0 2 0 0 2 2 2 0 NACHT domain RsgA_GTPase PF03193.16 AHV92608.1 - 0.038 13.9 0.0 0.066 13.1 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_28 PF13521.6 AHV92608.1 - 0.064 13.5 2.4 1.7 8.8 0.4 2.8 1 1 1 3 3 3 0 AAA domain TniB PF05621.11 AHV92608.1 - 0.069 12.6 0.6 1.8 7.9 0.6 2.1 2 0 0 2 2 2 0 Bacterial TniB protein ATPase PF06745.13 AHV92608.1 - 0.076 12.3 0.2 9.7 5.5 0.0 2.2 2 0 0 2 2 2 0 KaiC AAA_30 PF13604.6 AHV92608.1 - 0.083 12.6 0.0 0.18 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 AHV92608.1 - 0.093 12.5 0.0 0.21 11.4 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Rad17 PF03215.15 AHV92608.1 - 0.15 12.0 0.1 0.28 11.1 0.0 1.4 2 0 0 2 2 1 0 Rad17 P-loop domain ATPase_2 PF01637.18 AHV92608.1 - 0.2 11.5 0.0 0.32 10.9 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea Cytochrom_C1 PF02167.15 AHV92609.1 - 2.3e-20 73.3 2.0 4e-10 39.8 0.1 3.1 2 1 0 2 2 2 2 Cytochrome C1 family Cytochrome_CBB3 PF13442.6 AHV92609.1 - 0.00017 21.9 0.0 0.00061 20.1 0.0 2.0 2 0 0 2 2 2 1 Cytochrome C oxidase, cbb3-type, subunit III Cytochrom_C PF00034.21 AHV92609.1 - 0.0051 17.9 0.3 0.028 15.5 0.1 2.4 2 1 0 2 2 2 1 Cytochrome c Cytochrom_C550 PF14495.6 AHV92609.1 - 0.17 11.6 0.0 0.31 10.7 0.0 1.4 1 0 0 1 1 1 0 Cytochrome c-550 domain DDE_Tnp_ISL3 PF01610.17 AHV92610.1 - 5.8e-39 134.2 1.8 1.5e-22 80.5 0.2 2.7 2 1 1 3 3 3 2 Transposase HTH_Tnp_ISL3 PF13542.6 AHV92610.1 - 1e-11 44.0 0.1 2.7e-11 42.7 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV92610.1 - 4.5e-09 36.8 11.2 8.5e-09 35.9 11.2 1.5 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV92610.1 - 0.0042 17.1 0.2 0.012 15.6 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain NOB1_Zn_bind PF08772.11 AHV92610.1 - 0.011 15.9 0.2 0.95 9.7 0.0 2.5 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like SLT_L PF14718.6 AHV92610.1 - 0.012 15.7 1.5 0.012 15.7 1.5 1.8 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain zf-IS66 PF13005.7 AHV92610.1 - 3.7 8.0 8.8 2.7 8.5 6.6 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 adh_short PF00106.25 AHV92611.1 - 3.8e-27 95.0 0.1 4.5e-27 94.8 0.1 1.0 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 AHV92611.1 - 8.5e-19 68.0 0.0 9.7e-19 67.8 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 AHV92611.1 - 5.4e-08 32.9 0.1 7.9e-08 32.4 0.1 1.1 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.6 AHV92611.1 - 6.7e-06 26.1 0.5 8.2e-06 25.8 0.5 1.1 1 0 0 1 1 1 1 NAD(P)H-binding DFP PF04127.15 AHV92611.1 - 0.0015 18.4 0.1 0.0022 17.9 0.1 1.2 1 0 0 1 1 1 1 DNA / pantothenate metabolism flavoprotein Epimerase PF01370.21 AHV92611.1 - 0.0053 16.2 0.1 0.0065 16.0 0.1 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family tRNA-synt_1c PF00749.21 AHV92612.1 - 1.7e-104 349.1 0.0 2e-104 348.9 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain DUF3235 PF11574.8 AHV92612.1 - 0.078 13.8 0.2 0.25 12.2 0.2 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF3235) Mannosyl_trans4 PF15971.5 AHV92612.1 - 0.13 12.1 0.2 0.23 11.3 0.2 1.3 1 0 0 1 1 1 0 DolP-mannose mannosyltransferase Toxin_11 PF07473.11 AHV92612.1 - 0.17 12.0 0.3 0.3 11.2 0.3 1.4 1 0 0 1 1 1 0 Spasmodic peptide gm9a; conotoxin from Conus species NAD_binding_2 PF03446.15 AHV92613.1 - 2.4e-05 24.5 0.0 2.7e-05 24.4 0.0 1.1 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 AHV92613.1 - 0.014 14.8 0.0 0.018 14.4 0.0 1.1 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 AHV92613.1 - 0.042 14.4 0.0 0.059 14.0 0.0 1.3 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent MFS_1 PF07690.16 AHV92614.1 - 4.7e-41 140.9 61.8 1.2e-31 110.0 30.1 1.9 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 AHV92614.1 - 1.4e-05 24.2 16.3 0.0017 17.3 4.3 2.1 2 0 0 2 2 2 2 MFS_1 like family UNC-93 PF05978.16 AHV92614.1 - 0.053 13.2 4.4 0.15 11.8 0.1 2.2 2 0 0 2 2 2 0 Ion channel regulatory protein UNC-93 Sugar_tr PF00083.24 AHV92614.1 - 3.1 6.6 17.6 0.029 13.2 3.3 2.8 1 1 2 3 3 3 0 Sugar (and other) transporter DDE_Tnp_ISL3 PF01610.17 AHV92615.1 - 7.9e-65 218.9 1.2 1.1e-64 218.4 0.3 1.6 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV92615.1 - 1.4e-11 43.6 0.1 3.6e-11 42.3 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV92615.1 - 5.3e-09 36.6 11.2 1.1e-08 35.6 11.2 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV92615.1 - 0.0056 16.7 0.2 0.016 15.3 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain SLT_L PF14718.6 AHV92615.1 - 0.016 15.3 1.5 0.016 15.3 1.5 1.8 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain NOB1_Zn_bind PF08772.11 AHV92615.1 - 0.017 15.2 0.2 1.2 9.3 0.0 2.5 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-IS66 PF13005.7 AHV92615.1 - 8.2 6.9 9.6 3.6 8.1 6.6 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 FecR PF04773.13 AHV92616.1 - 2.4e-18 66.5 0.1 4.3e-18 65.7 0.1 1.4 1 0 0 1 1 1 1 FecR protein DUF4880 PF16220.5 AHV92616.1 - 0.0031 17.4 1.1 0.0031 17.4 1.1 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4880) Acyl-CoA_dh_1 PF00441.24 AHV92617.1 - 8.4e-33 113.7 4.6 8.4e-33 113.7 4.6 1.5 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain AidB_N PF18158.1 AHV92617.1 - 2.1e-16 60.3 2.0 2.7e-16 59.9 0.0 2.2 3 0 0 3 3 3 1 Adaptive response protein AidB N-terminal domain Acyl-CoA_dh_M PF02770.19 AHV92617.1 - 1.1e-12 48.0 0.0 2.2e-12 47.0 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 AHV92617.1 - 7.5e-09 36.0 0.9 2e-08 34.6 0.9 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Phage-MuB_C PF09077.11 AHV92617.1 - 0.042 13.7 0.1 0.16 11.9 0.1 2.0 1 0 0 1 1 1 0 Mu B transposition protein, C terminal Cytochrome_CBB3 PF13442.6 AHV92618.1 - 1.7e-35 121.2 2.6 3.9e-18 65.5 0.2 2.3 2 0 0 2 2 2 2 Cytochrome C oxidase, cbb3-type, subunit III Cytochrom_C PF00034.21 AHV92618.1 - 7e-08 33.5 7.3 0.006 17.7 0.2 2.9 2 2 0 2 2 2 2 Cytochrome c Cytochrom_C550 PF14495.6 AHV92618.1 - 0.001 18.8 0.5 0.18 11.5 0.0 2.6 3 0 0 3 3 3 1 Cytochrome c-550 domain Cytochrome_C554 PF13435.6 AHV92618.1 - 0.0068 17.3 0.0 1.5 9.8 0.0 2.3 2 0 0 2 2 2 1 Cytochrome c554 and c-prime Cytochrom_C1 PF02167.15 AHV92618.1 - 0.072 12.8 0.1 2.8 7.6 0.1 2.2 2 0 0 2 2 2 0 Cytochrome C1 family ODV-E18 PF10717.9 AHV92618.1 - 0.091 12.6 0.3 0.2 11.5 0.3 1.5 1 0 0 1 1 1 0 Occlusion-derived virus envelope protein ODV-E18 Cytochrome_C7 PF14522.6 AHV92618.1 - 0.1 12.6 0.0 15 5.6 0.0 2.2 2 0 0 2 2 2 0 Cytochrome c7 and related cytochrome c Paired_CXXCH_1 PF09699.10 AHV92618.1 - 0.11 12.2 0.2 18 5.2 0.0 2.4 2 0 0 2 2 2 0 Doubled CXXCH motif (Paired_CXXCH_1) DnaJ_CXXCXGXG PF00684.19 AHV92618.1 - 0.13 12.6 0.2 4.3 7.8 0.0 2.3 2 0 0 2 2 2 0 DnaJ central domain GSu_C4xC__C2xCH PF09698.10 AHV92618.1 - 0.33 11.8 4.4 15 6.4 0.3 2.6 2 0 0 2 2 2 0 Geobacter CxxxxCH...CXXCH motif (GSu_C4xC__C2xCH) DUF3734 PF12536.8 AHV92619.1 - 1.9e-38 131.0 0.2 3e-38 130.4 0.2 1.3 1 0 0 1 1 1 1 Patatin phospholipase Patatin PF01734.22 AHV92619.1 - 1.4e-24 87.4 4.4 1.9e-23 83.7 4.4 2.3 1 1 0 1 1 1 1 Patatin-like phospholipase DUF72 PF01904.18 AHV92620.1 - 6.7e-30 104.8 0.3 7.4e-30 104.7 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 DDE_Tnp_ISL3 PF01610.17 AHV92621.1 - 7.9e-65 218.9 1.2 1.1e-64 218.4 0.3 1.6 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV92621.1 - 1.4e-11 43.6 0.1 3.6e-11 42.3 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV92621.1 - 5.3e-09 36.6 11.2 1.1e-08 35.6 11.2 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV92621.1 - 0.0056 16.7 0.2 0.016 15.3 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain SLT_L PF14718.6 AHV92621.1 - 0.016 15.3 1.5 0.016 15.3 1.5 1.8 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain NOB1_Zn_bind PF08772.11 AHV92621.1 - 0.017 15.2 0.2 1.2 9.3 0.0 2.5 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-IS66 PF13005.7 AHV92621.1 - 8.2 6.9 9.6 3.6 8.1 6.6 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Plug PF07715.15 AHV92622.1 - 4.1e-30 104.5 2.1 4.1e-30 104.5 2.1 1.7 2 0 0 2 2 2 1 TonB-dependent Receptor Plug Domain LRR_10 PF18805.1 AHV92622.1 - 0.056 13.1 0.3 1.1 8.9 0.0 2.3 2 0 0 2 2 2 0 Leucine-rich repeat TonB_dep_Rec PF00593.24 AHV92623.1 - 1.7e-30 107.3 41.4 2.1e-30 107.1 41.4 1.0 1 0 0 1 1 1 1 TonB dependent receptor DUF481 PF04338.12 AHV92623.1 - 0.017 15.2 12.2 0.1 12.6 1.9 3.2 2 1 1 3 3 3 0 Protein of unknown function, DUF481 DUF3669 PF12417.8 AHV92623.1 - 0.21 11.8 1.0 1.5 9.0 1.0 2.3 1 1 0 1 1 1 0 Zinc finger protein AlkA_N PF06029.11 AHV92624.1 - 1.7e-24 86.3 0.0 3.1e-24 85.5 0.0 1.4 1 0 0 1 1 1 1 AlkA N-terminal domain HhH-GPD PF00730.25 AHV92624.1 - 2.8e-07 31.0 0.0 4.4e-07 30.3 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH_5 PF14520.6 AHV92624.1 - 0.00097 19.7 0.1 0.008 16.8 0.0 2.5 3 0 0 3 3 3 1 Helix-hairpin-helix domain HHH PF00633.23 AHV92624.1 - 0.13 12.2 0.0 0.42 10.6 0.0 1.9 1 0 0 1 1 1 0 Helix-hairpin-helix motif DUF4880 PF16220.5 AHV92625.1 - 9.4e-12 44.6 15.2 9.4e-12 44.6 15.2 3.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4880) FecR PF04773.13 AHV92625.1 - 1.4e-10 41.7 0.0 3.8e-10 40.2 0.0 1.8 1 0 0 1 1 1 1 FecR protein HrpB7 PF09486.10 AHV92625.1 - 0.0053 17.2 2.3 2.8 8.3 0.0 2.4 2 0 0 2 2 2 2 Bacterial type III secretion protein (HrpB7) Glyco_hydro_88 PF07470.13 AHV92627.1 - 7.6e-38 130.5 0.0 9.7e-38 130.1 0.0 1.0 1 0 0 1 1 1 1 Glycosyl Hydrolase Family 88 Hydrolase_like PF13242.6 AHV92628.1 - 1.8e-09 37.5 0.0 3e-09 36.8 0.0 1.3 1 0 0 1 1 1 1 HAD-hyrolase-like PNK3P PF08645.11 AHV92628.1 - 5.1e-07 29.5 0.0 6.1e-07 29.3 0.0 1.1 1 0 0 1 1 1 1 Polynucleotide kinase 3 phosphatase Hydrolase PF00702.26 AHV92628.1 - 5.6e-05 23.5 0.0 0.00017 21.9 0.0 1.8 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 AHV92628.1 - 8.3e-05 22.6 0.0 0.0009 19.3 0.0 2.1 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 AHV92628.1 - 0.002 18.2 0.0 0.04 14.0 0.0 2.2 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase DUF1485 PF07364.12 AHV92628.1 - 0.0024 17.2 0.0 0.003 16.9 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M81 HAD PF12710.7 AHV92628.1 - 0.016 15.7 0.2 0.084 13.3 0.2 2.0 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase IclR PF01614.18 AHV92630.1 - 3.8e-10 39.7 0.0 5.2e-10 39.2 0.0 1.1 1 0 0 1 1 1 1 Bacterial transcriptional regulator AAA_31 PF13614.6 AHV92631.1 - 2.6e-65 219.6 0.0 3.7e-65 219.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 AHV92631.1 - 1.9e-25 89.4 0.0 2.8e-25 88.8 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.11 AHV92631.1 - 1.6e-12 47.3 0.1 1.1e-05 24.8 0.1 2.2 2 0 0 2 2 2 2 ATPase MipZ CBP_BcsQ PF06564.12 AHV92631.1 - 2.1e-12 47.0 0.0 3e-12 46.5 0.0 1.4 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ ParA PF10609.9 AHV92631.1 - 2.3e-09 37.1 0.1 1.4e-07 31.2 0.1 2.1 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 AHV92631.1 - 1.6e-08 34.1 0.3 6.2e-08 32.2 0.2 1.9 1 1 1 2 2 2 1 Anion-transporting ATPase Fer4_NifH PF00142.18 AHV92631.1 - 4.5e-07 29.6 0.1 5e-06 26.2 0.0 2.0 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family VirC1 PF07015.11 AHV92631.1 - 0.0025 17.2 0.1 0.0057 16.0 0.0 1.7 1 1 0 1 1 1 1 VirC1 protein AAA_25 PF13481.6 AHV92631.1 - 0.006 16.2 0.0 0.051 13.2 0.0 2.0 2 0 0 2 2 2 1 AAA domain CLP1_P PF16575.5 AHV92631.1 - 0.0071 16.2 0.0 0.015 15.1 0.0 1.5 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop SRP54 PF00448.22 AHV92631.1 - 0.012 15.2 0.2 0.078 12.6 0.1 2.0 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain TonB_dep_Rec PF00593.24 AHV92632.1 - 4.7e-47 161.9 4.6 5.7e-47 161.7 4.6 1.2 1 0 0 1 1 1 1 TonB dependent receptor OMP_b-brl_3 PF14905.6 AHV92632.1 - 0.0032 16.5 0.1 0.0075 15.3 0.1 1.4 1 1 0 1 1 1 1 Outer membrane protein beta-barrel family adh_short PF00106.25 AHV92633.1 - 6.7e-53 179.0 0.0 9.6e-53 178.5 0.0 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 AHV92633.1 - 6.2e-43 147.0 0.1 7.8e-43 146.7 0.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 AHV92633.1 - 3.8e-10 40.0 0.0 8.7e-10 38.8 0.0 1.6 1 1 0 1 1 1 1 KR domain DUF1776 PF08643.10 AHV92633.1 - 2.7e-08 33.6 0.0 8.5e-08 31.9 0.0 1.7 1 1 0 1 1 1 1 Fungal family of unknown function (DUF1776) Epimerase PF01370.21 AHV92633.1 - 8.1e-05 22.2 0.0 0.0001 21.8 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 AHV92633.1 - 0.0056 16.6 0.7 0.0097 15.8 0.1 1.7 2 0 0 2 2 2 1 NAD(P)H-binding 3HCDH_N PF02737.18 AHV92633.1 - 0.02 14.8 0.0 0.04 13.8 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GDP_Man_Dehyd PF16363.5 AHV92633.1 - 0.076 12.4 0.0 0.098 12.0 0.0 1.2 1 0 0 1 1 1 0 GDP-mannose 4,6 dehydratase Polysacc_synt_2 PF02719.15 AHV92633.1 - 0.1 11.7 0.0 0.16 11.1 0.0 1.2 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein Iso_dh PF00180.20 AHV92634.1 - 3.3e-115 385.0 0.0 3.8e-115 384.7 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Acetyltransf_1 PF00583.25 AHV92635.1 - 6e-08 32.9 0.0 7.7e-08 32.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 AHV92635.1 - 0.00052 20.0 0.0 0.00091 19.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 AHV92635.1 - 0.001 19.2 0.0 0.022 14.8 0.0 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 AHV92635.1 - 0.0076 16.6 0.0 0.01 16.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain HutD PF05962.11 AHV92636.1 - 1.2e-54 185.1 0.1 1.4e-54 184.9 0.1 1.0 1 0 0 1 1 1 1 HutD Peptidase_M22 PF00814.25 AHV92637.1 - 4.9e-24 85.5 1.0 8.3e-24 84.7 1.0 1.2 1 0 0 1 1 1 1 Glycoprotease family Acetyltransf_1 PF00583.25 AHV92637.1 - 4e-13 49.6 0.0 1.1e-12 48.2 0.0 1.8 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 AHV92637.1 - 2.3e-10 40.8 0.0 8.2e-10 39.0 0.0 2.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 AHV92637.1 - 1.3e-09 38.1 0.0 2.8e-09 37.0 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 AHV92637.1 - 0.00012 22.0 0.0 0.00033 20.6 0.0 1.8 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_6 PF13480.7 AHV92637.1 - 0.00036 20.7 0.2 0.00091 19.4 0.2 1.8 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 AHV92637.1 - 0.1 12.7 0.0 0.26 11.4 0.0 1.6 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain HTH_18 PF12833.7 AHV92638.1 - 1.9e-08 34.4 2.8 4.3e-08 33.3 2.8 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 AHV92638.1 - 3.6e-05 23.8 0.0 5.6e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix proteins, AraC family NDK PF00334.19 AHV92639.1 - 4e-54 182.3 0.0 4.4e-54 182.1 0.0 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase TadE PF07811.12 AHV92640.1 - 0.0069 16.6 4.9 0.019 15.2 4.9 1.8 1 0 0 1 1 1 1 TadE-like protein Tad PF13400.6 AHV92640.1 - 0.033 14.5 4.9 0.033 14.5 4.9 2.6 4 1 0 4 4 4 0 Putative Flp pilus-assembly TadE/G-like PP-binding PF00550.25 AHV92641.1 - 6.9e-09 35.9 0.0 7.9e-09 35.7 0.0 1.1 1 0 0 1 1 1 1 Phosphopantetheine attachment site Aldedh PF00171.22 AHV92642.1 - 8.8e-133 443.2 0.2 1e-132 443.0 0.2 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family RRF PF01765.19 AHV92642.1 - 0.038 13.9 0.1 0.072 13.1 0.1 1.4 1 0 0 1 1 1 0 Ribosome recycling factor Arginosuc_synth PF00764.19 AHV92643.1 - 1.3e-57 195.9 0.0 1.5e-57 195.6 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase QueC PF06508.13 AHV92643.1 - 0.053 13.0 0.0 0.093 12.2 0.0 1.4 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC Fer2_4 PF13510.6 AHV92646.1 - 1.6e-24 85.7 0.5 5.1e-24 84.1 0.5 1.9 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain NADH-G_4Fe-4S_3 PF10588.9 AHV92646.1 - 4e-17 61.5 0.2 4e-17 61.5 0.2 3.3 3 0 0 3 3 2 1 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Molybdop_Fe4S4 PF04879.16 AHV92646.1 - 4.2e-17 61.9 1.4 1.8e-16 59.8 1.4 2.2 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Fer4_7 PF12838.7 AHV92646.1 - 9.9e-11 42.1 7.8 1.5e-05 25.5 12.5 3.9 3 1 3 6 6 5 3 4Fe-4S dicluster domain Molybdopterin PF00384.22 AHV92646.1 - 3e-09 36.4 0.1 3.9e-09 36.0 0.1 1.2 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fer4_21 PF14697.6 AHV92646.1 - 1.5e-07 31.5 8.2 1.5e-07 31.5 8.2 2.9 3 1 1 4 4 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 AHV92646.1 - 2e-07 30.5 11.6 1e-05 25.1 1.8 3.5 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 AHV92646.1 - 1.9e-06 27.7 9.9 5.9e-05 23.0 1.3 3.7 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_9 PF13187.6 AHV92646.1 - 4.8e-06 26.6 11.5 4.8e-06 26.6 11.5 3.9 2 1 1 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 AHV92646.1 - 7.2e-06 26.0 30.4 8.8e-05 22.5 13.9 3.5 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 AHV92646.1 - 0.00012 22.0 14.2 0.00032 20.6 3.8 4.2 5 0 0 5 5 4 2 4Fe-4S binding domain Fer4_8 PF13183.6 AHV92646.1 - 0.0015 18.9 10.3 0.0015 18.9 10.3 3.5 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 AHV92646.1 - 0.0033 18.3 17.1 0.0088 17.0 5.6 3.5 2 1 1 3 3 3 2 4Fe-4S double cluster binding domain Fer4_15 PF13459.6 AHV92646.1 - 0.0092 16.7 8.2 0.78 10.5 0.2 2.8 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_4 PF12800.7 AHV92646.1 - 0.032 14.7 2.9 0.032 14.7 2.9 4.0 5 0 0 5 5 3 0 4Fe-4S binding domain Fer4_22 PF17179.4 AHV92646.1 - 2.7 8.9 20.1 3 8.8 2.1 3.2 2 1 2 4 4 4 0 4Fe-4S dicluster domain Hydrolase_4 PF12146.8 AHV92648.1 - 0.00013 21.3 0.3 0.0082 15.4 0.1 2.2 1 1 1 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 AHV92648.1 - 0.033 14.8 10.1 0.046 14.3 9.7 1.5 1 1 0 1 1 1 0 Alpha/beta hydrolase family Peptidase_S9 PF00326.21 AHV92648.1 - 0.04 13.4 0.0 0.072 12.5 0.0 1.4 1 0 0 1 1 1 0 Prolyl oligopeptidase family COesterase PF00135.28 AHV92648.1 - 0.22 10.4 0.0 0.32 9.8 0.0 1.2 1 0 0 1 1 1 0 Carboxylesterase family ECH_1 PF00378.20 AHV92650.1 - 3.2e-30 105.3 0.0 3.6e-23 82.2 0.0 2.1 2 0 0 2 2 2 2 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 AHV92650.1 - 2.1e-08 34.1 0.0 9.6e-08 31.9 0.0 1.9 2 0 0 2 2 2 1 Enoyl-CoA hydratase/isomerase IspD PF01128.19 AHV92651.1 - 8.1e-48 163.1 0.2 8.9e-48 162.9 0.2 1.0 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NTP_transf_3 PF12804.7 AHV92651.1 - 0.002 18.5 9.7 0.0024 18.3 8.5 1.6 1 1 0 1 1 1 1 MobA-like NTP transferase domain LRV PF01816.17 AHV92651.1 - 0.084 13.3 0.6 0.084 13.3 0.6 4.4 4 0 0 4 4 4 0 Leucine rich repeat variant DUF348 PF03990.14 AHV92651.1 - 0.14 11.9 1.9 0.27 11.0 0.0 2.4 3 0 0 3 3 3 0 G5-linked-Ubiquitin-like domain zf-CHCC PF10276.9 AHV92652.1 - 2.6e-09 37.0 0.1 3.4e-09 36.6 0.1 1.2 1 0 0 1 1 1 1 Zinc-finger domain COX5B PF01215.19 AHV92652.1 - 0.031 14.0 0.0 0.031 14.0 0.0 1.0 1 0 0 1 1 1 0 Cytochrome c oxidase subunit Vb zinc_ribbon_4 PF13717.6 AHV92652.1 - 0.033 14.1 0.0 0.039 13.9 0.0 1.1 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 AHV92652.1 - 0.054 13.2 0.8 0.076 12.8 0.8 1.2 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_5 PF13719.6 AHV92652.1 - 0.089 12.6 0.0 0.11 12.3 0.0 1.2 1 0 0 1 1 1 0 zinc-ribbon domain Rhodanese PF00581.20 AHV92653.1 - 1.9e-26 92.7 0.0 2.2e-17 63.5 0.0 2.1 2 0 0 2 2 2 2 Rhodanese-like domain Thioredoxin PF00085.20 AHV92654.1 - 5.7e-35 119.4 0.0 6.4e-35 119.3 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 AHV92654.1 - 3.1e-09 37.3 0.0 5.6e-08 33.2 0.0 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.6 AHV92654.1 - 2.9e-06 27.5 0.0 0.00096 19.4 0.0 2.1 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_9 PF14595.6 AHV92654.1 - 2.2e-05 24.2 0.0 2.3e-05 24.2 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin TraF PF13728.6 AHV92654.1 - 0.00028 20.8 0.0 0.00037 20.4 0.0 1.1 1 0 0 1 1 1 1 F plasmid transfer operon protein AhpC-TSA PF00578.21 AHV92654.1 - 0.00032 20.6 0.0 0.00046 20.1 0.0 1.3 1 1 0 1 1 1 1 AhpC/TSA family OST3_OST6 PF04756.13 AHV92654.1 - 0.00034 20.1 0.0 0.00041 19.8 0.0 1.1 1 0 0 1 1 1 1 OST3 / OST6 family, transporter family Thioredoxin_7 PF13899.6 AHV92654.1 - 0.00078 19.6 0.0 0.0014 18.7 0.0 1.4 1 1 0 1 1 1 1 Thioredoxin-like Thioredoxin_3 PF13192.6 AHV92654.1 - 0.0013 18.7 0.0 0.0017 18.4 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin domain DSBA PF01323.20 AHV92654.1 - 0.0017 18.1 0.1 0.0066 16.2 0.0 1.8 1 1 1 2 2 2 1 DSBA-like thioredoxin domain Redoxin PF08534.10 AHV92654.1 - 0.0045 16.7 0.1 0.016 14.9 0.1 1.8 1 1 0 1 1 1 1 Redoxin DUF836 PF05768.14 AHV92654.1 - 0.016 15.6 0.0 0.022 15.1 0.0 1.3 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) HyaE PF07449.11 AHV92654.1 - 0.067 13.2 0.0 0.088 12.8 0.0 1.2 1 0 0 1 1 1 0 Hydrogenase-1 expression protein HyaE Glutaredoxin PF00462.24 AHV92654.1 - 0.12 12.6 0.0 0.2 11.9 0.0 1.4 1 0 0 1 1 1 0 Glutaredoxin Thioredoxin_6 PF13848.6 AHV92654.1 - 0.15 11.9 0.0 0.21 11.5 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin-like domain MFS_1 PF07690.16 AHV92655.1 - 7.5e-18 64.6 40.8 7.5e-18 64.6 40.8 2.2 1 1 1 2 2 2 1 Major Facilitator Superfamily MFS_3 PF05977.13 AHV92655.1 - 0.00015 20.3 26.4 0.00015 20.3 26.4 1.6 2 0 0 2 2 2 1 Transmembrane secretion effector PDR_CDR PF06422.12 AHV92655.1 - 0.56 10.1 2.4 2.7 7.9 2.4 2.2 1 0 0 1 1 1 0 CDR ABC transporter rve_3 PF13683.6 AHV92656.1 - 1.8e-31 107.7 0.0 4.1e-31 106.6 0.0 1.6 2 0 0 2 2 2 1 Integrase core domain rve PF00665.26 AHV92656.1 - 5.6e-24 84.6 0.0 9.5e-24 83.9 0.0 1.3 1 0 0 1 1 1 1 Integrase core domain rve_2 PF13333.6 AHV92656.1 - 7e-07 29.3 0.0 1.2e-06 28.6 0.0 1.3 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AHV92656.1 - 0.00052 20.3 0.0 0.00079 19.7 0.0 1.4 1 0 0 1 1 1 1 DDE domain SDF PF00375.18 AHV92657.1 - 1.4e-60 205.4 22.3 1.6e-60 205.2 22.3 1.0 1 0 0 1 1 1 1 Sodium:dicarboxylate symporter family ABC_tran PF00005.27 AHV92658.1 - 4.8e-33 114.6 0.0 6.2e-33 114.2 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_16 PF13191.6 AHV92658.1 - 1.4e-07 32.1 0.1 2.2e-07 31.4 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_21 PF13304.6 AHV92658.1 - 9.3e-07 28.9 0.1 0.02 14.7 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 AHV92658.1 - 1.4e-06 27.9 0.2 1.2e-05 24.8 0.2 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 AHV92658.1 - 0.00074 19.2 0.0 0.0017 18.0 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 AHV92658.1 - 0.00084 19.3 0.0 0.0018 18.2 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_33 PF13671.6 AHV92658.1 - 0.00098 19.3 2.3 0.012 15.8 2.3 2.5 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 AHV92658.1 - 0.006 16.8 0.3 0.023 15.0 0.3 2.1 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 AHV92658.1 - 0.012 16.1 0.1 0.02 15.4 0.1 1.2 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 AHV92658.1 - 0.017 15.7 0.2 0.087 13.4 0.1 2.1 2 1 0 2 2 2 0 AAA domain AAA_30 PF13604.6 AHV92658.1 - 0.029 14.1 0.9 0.095 12.4 0.9 1.9 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 AHV92658.1 - 0.032 14.5 0.4 0.61 10.4 0.4 2.4 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.6 AHV92658.1 - 0.036 13.6 0.1 0.3 10.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.12 AHV92658.1 - 0.057 12.7 0.0 0.085 12.1 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_27 PF13514.6 AHV92658.1 - 0.078 12.6 0.0 0.15 11.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 AHV92658.1 - 0.1 12.5 0.0 0.37 10.7 0.0 1.8 2 0 0 2 2 2 0 Rad17 P-loop domain AAA PF00004.29 AHV92658.1 - 0.12 12.8 0.1 1 9.8 0.0 2.2 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 AHV92658.1 - 0.13 12.2 0.1 0.37 10.7 0.1 1.7 2 0 0 2 2 2 0 NACHT domain NTPase_1 PF03266.15 AHV92658.1 - 0.13 12.2 0.0 0.24 11.3 0.0 1.5 1 0 0 1 1 1 0 NTPase FolB PF02152.18 AHV92659.1 - 2.4e-28 98.9 0.2 2.7e-28 98.7 0.2 1.0 1 0 0 1 1 1 1 Dihydroneopterin aldolase EamA PF00892.20 AHV92660.1 - 1.1e-36 126.0 41.6 4.8e-19 68.9 13.5 2.0 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.16 AHV92660.1 - 0.0021 17.5 7.1 0.012 15.0 7.0 1.9 1 1 0 1 1 1 1 Triose-phosphate Transporter family Mg_trans_NIPA PF05653.14 AHV92660.1 - 0.021 13.9 0.3 0.021 13.9 0.3 2.1 2 0 0 2 2 2 0 Magnesium transporter NIPA BPD_transp_2 PF02653.16 AHV92661.1 - 2.9e-41 141.4 41.8 3.5e-41 141.2 41.8 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Capsule_synth PF05159.14 AHV92662.1 - 7.9e-83 278.4 0.0 9.3e-83 278.2 0.0 1.0 1 0 0 1 1 1 1 Capsule polysaccharide biosynthesis protein OSCP PF00213.18 AHV92663.1 - 2.1e-49 168.0 0.1 2.3e-49 167.8 0.1 1.0 1 0 0 1 1 1 1 ATP synthase delta (OSCP) subunit STI1 PF17830.1 AHV92663.1 - 0.02 14.8 0.2 0.045 13.7 0.2 1.5 1 0 0 1 1 1 0 STI1 domain rve_3 PF13683.6 AHV92664.1 - 1.4e-31 108.0 0.1 4.5e-31 106.4 0.0 1.9 2 0 0 2 2 2 1 Integrase core domain rve PF00665.26 AHV92664.1 - 4.5e-25 88.2 0.0 1.1e-23 83.7 0.0 2.2 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 AHV92664.1 - 8.3e-12 45.1 8.6 1.7e-11 44.1 8.6 1.5 1 0 0 1 1 1 1 HTH-like domain rve_2 PF13333.6 AHV92664.1 - 5.8e-07 29.6 0.0 1.3e-06 28.5 0.0 1.6 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AHV92664.1 - 0.0004 20.6 0.0 0.00091 19.5 0.0 1.6 1 1 1 2 2 2 1 DDE domain Rhomboid_SP PF12595.8 AHV92664.1 - 0.058 12.8 0.1 2.1 7.7 0.0 2.3 1 1 0 2 2 2 0 Rhomboid serine protease DUF1780 PF08682.10 AHV92664.1 - 0.13 11.9 1.0 1.6 8.3 0.3 2.2 2 0 0 2 2 2 0 Putative endonuclease, protein of unknown function (DUF1780) MMR_HSR1 PF01926.23 AHV92665.1 - 6.8e-33 113.1 0.4 3e-24 85.3 0.1 2.3 2 0 0 2 2 2 2 50S ribosome-binding GTPase KH_dom-like PF14714.6 AHV92665.1 - 4e-25 87.9 0.1 1.5e-24 86.1 0.0 1.9 2 0 0 2 2 2 1 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal GTP_EFTU PF00009.27 AHV92665.1 - 3.2e-16 59.4 1.0 2e-07 30.7 0.0 4.0 2 2 1 3 3 3 3 Elongation factor Tu GTP binding domain FeoB_N PF02421.18 AHV92665.1 - 1.4e-13 50.7 0.0 3.5e-13 49.4 0.0 1.7 2 0 0 2 2 2 1 Ferrous iron transport protein B Dynamin_N PF00350.23 AHV92665.1 - 5e-09 36.4 0.1 0.0031 17.6 0.0 3.2 2 1 1 3 3 3 3 Dynamin family AIG1 PF04548.16 AHV92665.1 - 1.8e-06 27.5 0.1 7.3e-06 25.5 0.1 1.9 2 0 0 2 2 2 1 AIG1 family RsgA_GTPase PF03193.16 AHV92665.1 - 9.6e-06 25.6 0.1 0.041 13.8 0.0 3.5 3 1 0 3 3 3 1 RsgA GTPase cobW PF02492.19 AHV92665.1 - 9.8e-05 22.0 0.4 1 8.9 0.0 3.1 3 0 0 3 3 3 2 CobW/HypB/UreG, nucleotide-binding domain PduV-EutP PF10662.9 AHV92665.1 - 0.00012 21.9 0.1 0.31 10.8 0.1 3.0 2 1 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation ATP_bind_1 PF03029.17 AHV92665.1 - 0.00091 19.1 0.1 0.025 14.3 0.0 2.5 2 1 1 3 3 3 1 Conserved hypothetical ATP binding protein MeaB PF03308.16 AHV92665.1 - 0.00099 18.2 0.1 0.65 8.9 0.1 2.6 2 0 0 2 2 2 2 Methylmalonyl Co-A mutase-associated GTPase MeaB Arf PF00025.21 AHV92665.1 - 0.0015 18.0 0.1 2.4 7.6 0.0 3.1 3 0 0 3 3 3 1 ADP-ribosylation factor family ABC_tran PF00005.27 AHV92665.1 - 0.0037 17.8 0.0 0.0063 17.0 0.0 1.4 1 0 0 1 1 1 1 ABC transporter Roc PF08477.13 AHV92665.1 - 0.0043 17.3 0.1 0.069 13.4 0.0 2.7 2 1 0 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase FtsK_SpoIIIE PF01580.18 AHV92665.1 - 0.0083 15.5 0.1 0.51 9.7 0.0 2.7 3 0 0 3 3 3 1 FtsK/SpoIIIE family AAA_24 PF13479.6 AHV92665.1 - 0.016 15.0 0.0 0.052 13.3 0.0 1.7 1 1 0 1 1 1 0 AAA domain Ras PF00071.22 AHV92665.1 - 0.031 13.9 0.0 0.12 11.9 0.0 2.0 2 1 0 2 2 2 0 Ras family Septin PF00735.18 AHV92665.1 - 0.053 12.8 0.0 0.096 11.9 0.0 1.4 1 0 0 1 1 1 0 Septin Gtr1_RagA PF04670.12 AHV92665.1 - 0.11 11.9 0.1 6.1 6.1 0.0 2.3 2 0 0 2 2 2 0 Gtr1/RagA G protein conserved region Nuc_deoxyri_tr2 PF15891.5 AHV92665.1 - 0.12 12.7 1.0 19 5.6 0.0 2.4 2 0 0 2 2 2 0 Nucleoside 2-deoxyribosyltransferase like AAA_14 PF13173.6 AHV92665.1 - 0.13 12.3 0.0 0.26 11.3 0.0 1.5 1 1 0 1 1 1 0 AAA domain UPF0102 PF02021.17 AHV92666.1 - 5.7e-23 81.0 0.0 7e-23 80.7 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0102 FTSW_RODA_SPOVE PF01098.19 AHV92667.1 - 5.8e-100 334.8 19.4 6.8e-100 334.5 19.4 1.0 1 0 0 1 1 1 1 Cell cycle protein PMP1_2 PF08114.11 AHV92667.1 - 7.7 6.3 9.9 0.51 10.1 0.3 3.0 2 0 0 2 2 2 0 ATPase proteolipid family Mur_ligase_M PF08245.12 AHV92668.1 - 4.3e-12 46.4 0.0 7.3e-12 45.7 0.0 1.4 1 0 0 1 1 1 1 Mur ligase middle domain RimK PF08443.11 AHV92668.1 - 1.1e-08 35.0 0.0 0.00016 21.3 0.0 2.3 2 0 0 2 2 2 2 RimK-like ATP-grasp domain Mur_ligase_C PF02875.21 AHV92668.1 - 3.7e-08 33.5 0.0 1.5e-07 31.5 0.0 2.1 1 0 0 1 1 1 1 Mur ligase family, glutamate ligase domain CPSase_L_D2 PF02786.17 AHV92668.1 - 2.7e-07 30.3 0.0 4.7e-07 29.5 0.0 1.4 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp PF02222.22 AHV92668.1 - 7.5e-07 28.9 0.0 1.6e-06 27.8 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_5 PF13549.6 AHV92668.1 - 8.1e-07 28.7 0.0 2.3e-06 27.3 0.0 1.7 2 0 0 2 2 2 1 ATP-grasp domain GARS_A PF01071.19 AHV92668.1 - 2.9e-05 23.9 0.0 6.9e-05 22.7 0.0 1.6 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Dala_Dala_lig_C PF07478.13 AHV92668.1 - 0.00018 21.1 0.1 0.00065 19.3 0.0 2.0 3 0 0 3 3 3 1 D-ala D-ala ligase C-terminus ATP-grasp_3 PF02655.14 AHV92668.1 - 0.00023 21.3 0.0 0.0082 16.2 0.0 2.4 2 0 0 2 2 2 1 ATP-grasp domain GSH-S_ATP PF02955.16 AHV92668.1 - 0.0059 16.0 0.0 0.019 14.4 0.0 1.8 2 0 0 2 2 2 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_2 PF08442.10 AHV92668.1 - 0.014 14.9 0.0 0.026 14.1 0.0 1.3 1 0 0 1 1 1 0 ATP-grasp domain ATPgrasp_ST PF14397.6 AHV92668.1 - 0.037 13.3 0.0 0.45 9.7 0.0 2.1 2 0 0 2 2 2 0 Sugar-transfer associated ATP-grasp ATP-synt_ab PF00006.25 AHV92668.1 - 0.085 12.5 0.2 1.8 8.2 0.0 2.7 3 0 0 3 3 3 0 ATP synthase alpha/beta family, nucleotide-binding domain FliS PF02561.14 AHV92669.1 - 9.7e-31 106.4 0.3 1.1e-30 106.2 0.3 1.0 1 0 0 1 1 1 1 Flagellar protein FliS TM2 PF05154.16 AHV92670.1 - 0.98 9.8 7.0 1.7 9.0 0.8 3.2 2 0 0 2 2 2 0 TM2 domain DUF4954 PF16314.5 AHV92670.1 - 1.4 6.9 3.2 2 6.4 3.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4954) Methyltransf_11 PF08241.12 AHV92671.1 - 9.5e-08 32.6 0.0 1.5e-07 32.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 AHV92671.1 - 0.00033 20.5 0.0 0.00049 19.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 AHV92671.1 - 0.017 15.9 0.0 0.023 15.4 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_25 PF13649.6 AHV92671.1 - 0.024 15.3 0.0 0.036 14.8 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Ubie_methyltran PF01209.18 AHV92671.1 - 0.072 12.4 0.0 0.089 12.1 0.0 1.1 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family MHYT PF03707.16 AHV92672.1 - 1.1e-06 28.7 17.8 2.9e-05 24.2 3.1 2.4 3 0 0 3 3 3 2 Bacterial signalling protein N terminal repeat Phage_holin_3_6 PF07332.11 AHV92672.1 - 5.7 7.0 8.0 6.4 6.9 8.0 1.1 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III ECH_1 PF00378.20 AHV92674.1 - 2.6e-60 203.8 0.0 3e-60 203.6 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 AHV92674.1 - 3.6e-32 112.2 0.1 1.1e-28 100.7 0.0 2.0 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase Lactamase_B PF00753.27 AHV92674.1 - 0.11 12.4 0.0 0.14 12.1 0.0 1.2 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily GTP_EFTU PF00009.27 AHV92675.1 - 2.1e-35 122.1 0.0 2.7e-35 121.7 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D2 PF03144.25 AHV92675.1 - 1.2e-06 28.8 0.2 3.5e-06 27.3 0.2 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 AHV92675.1 - 0.00022 21.3 0.1 0.0012 18.9 0.1 2.1 1 1 0 1 1 1 1 50S ribosome-binding GTPase SRPRB PF09439.10 AHV92675.1 - 0.088 12.2 0.0 1.9 7.9 0.0 2.2 1 1 1 2 2 2 0 Signal recognition particle receptor beta subunit IFT43 PF15305.6 AHV92675.1 - 0.19 11.9 0.1 1.8 8.8 0.0 2.2 2 0 0 2 2 2 0 Intraflagellar transport protein 43 Hexapep PF00132.24 AHV92676.1 - 5.2e-14 51.3 9.6 6e-07 28.9 2.8 4.4 3 1 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 AHV92676.1 - 0.00016 21.4 9.8 0.0012 18.5 0.6 4.3 3 1 1 4 4 4 1 Hexapeptide repeat of succinyl-transferase Pepsin-I3 PF06394.13 AHV92676.1 - 0.072 13.3 0.0 0.14 12.4 0.0 1.4 1 0 0 1 1 1 0 Pepsin inhibitor-3-like repeated domain DUF1269 PF06897.12 AHV92677.1 - 3e-08 33.9 3.8 3e-08 33.9 3.8 1.8 1 1 1 2 2 2 1 Protein of unknown function (DUF1269) DUF456 PF04306.13 AHV92677.1 - 0.0014 19.0 3.1 0.0014 19.0 3.1 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF456) Ketoacyl-synt_2 PF13723.6 AHV92677.1 - 0.0085 15.8 0.6 0.012 15.3 0.6 1.1 1 0 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain Ribosomal_60s PF00428.19 AHV92677.1 - 1.6 9.4 12.4 0.044 14.4 5.7 1.9 2 0 0 2 2 2 0 60s Acidic ribosomal protein Bacteriocin_IIc PF10439.9 AHV92677.1 - 7.5 6.8 16.2 1.1 9.4 11.4 1.9 2 0 0 2 2 2 0 Bacteriocin class II with double-glycine leader peptide Bmp PF02608.14 AHV92678.1 - 9.2e-14 51.1 0.0 1.2e-13 50.7 0.0 1.1 1 0 0 1 1 1 1 ABC transporter substrate-binding protein PnrA-like APH PF01636.23 AHV92679.1 - 9.4e-34 117.4 5.2 1.2e-33 117.1 4.5 1.5 1 1 0 1 1 1 1 Phosphotransferase enzyme family EcKinase PF02958.20 AHV92679.1 - 5e-06 26.0 0.0 0.0003 20.2 0.0 2.1 1 1 1 2 2 2 2 Ecdysteroid kinase Choline_kinase PF01633.20 AHV92679.1 - 0.044 13.4 0.0 0.067 12.8 0.0 1.2 1 0 0 1 1 1 0 Choline/ethanolamine kinase DUF1679 PF07914.11 AHV92679.1 - 0.082 11.8 0.0 0.12 11.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1679) HTH_1 PF00126.27 AHV92680.1 - 9.7e-21 73.5 2.1 2.4e-20 72.3 2.1 1.7 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family LysR_substrate PF03466.20 AHV92680.1 - 2.7e-16 59.6 7.6 2.7e-16 59.6 7.6 2.2 1 1 0 2 2 2 1 LysR substrate binding domain PmbA_TldD PF01523.16 AHV92681.1 - 6e-67 226.4 0.3 1e-66 225.7 0.1 1.4 2 0 0 2 2 2 1 Putative modulator of DNA gyrase FecCD PF01032.18 AHV92682.1 - 3.4e-65 220.1 31.0 3.8e-65 219.9 31.0 1.0 1 0 0 1 1 1 1 FecCD transport family CrgA PF06781.12 AHV92682.1 - 5 7.2 12.5 8 6.6 0.0 4.1 3 1 1 4 4 4 0 Cell division protein CrgA PdxA PF04166.12 AHV92683.1 - 1.7e-77 260.6 0.0 1.9e-77 260.4 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal phosphate biosynthetic protein PdxA Iso_dh PF00180.20 AHV92683.1 - 0.0052 16.0 0.1 0.0073 15.5 0.1 1.2 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase RNB PF00773.19 AHV92684.1 - 1.6e-48 165.7 0.0 5.1e-37 127.9 0.0 2.1 1 1 1 2 2 2 2 RNB domain UPF0158 PF03682.13 AHV92684.1 - 0.056 13.4 0.1 0.14 12.2 0.1 1.6 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0158) UPF0086 PF01868.16 AHV92684.1 - 0.21 11.5 0.0 0.4 10.6 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function UPF0086 PAPS_reduct PF01507.19 AHV92686.1 - 5.5e-39 134.0 0.0 6.6e-39 133.7 0.0 1.1 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family Sugar_tr PF00083.24 AHV92687.1 - 8e-36 123.9 8.3 9.5e-36 123.6 8.3 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 AHV92687.1 - 6.7e-18 64.7 16.9 8.4e-18 64.4 16.9 1.1 1 0 0 1 1 1 1 Major Facilitator Superfamily Phage_holin_Dp1 PF16938.5 AHV92687.1 - 0.18 12.0 4.0 4.6 7.5 0.1 3.0 3 0 0 3 3 3 0 Putative phage holin Dp-1 AA_kinase PF00696.28 AHV92688.1 - 1.1e-48 165.9 1.0 3.1e-48 164.5 0.3 1.8 2 0 0 2 2 2 1 Amino acid kinase family ACT_7 PF13840.6 AHV92688.1 - 1.3e-15 56.9 3.0 4.6e-14 52.0 0.6 2.7 2 0 0 2 2 2 2 ACT domain ACT PF01842.25 AHV92688.1 - 5.9e-14 51.6 0.8 1.3e-06 28.0 0.1 2.9 2 0 0 2 2 2 2 ACT domain Glyco_transf_28 PF03033.20 AHV92688.1 - 0.12 12.5 0.2 0.35 10.9 0.0 1.9 2 0 0 2 2 2 0 Glycosyltransferase family 28 N-terminal domain Arabinose_Isome PF02610.15 AHV92688.1 - 0.13 11.4 0.0 0.19 10.9 0.0 1.2 1 0 0 1 1 1 0 L-arabinose isomerase FCD PF07729.12 AHV92689.1 - 1.3e-23 83.8 6.2 2.1e-23 83.1 6.2 1.3 1 0 0 1 1 1 1 FCD domain GntR PF00392.21 AHV92689.1 - 8.6e-22 76.6 0.2 1.7e-21 75.6 0.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family PaaX PF07848.12 AHV92689.1 - 7.6e-05 22.9 0.1 0.00029 21.0 0.0 2.0 2 0 0 2 2 1 1 PaaX-like protein Rrf2 PF02082.20 AHV92689.1 - 0.0003 21.1 0.1 0.00076 19.8 0.1 1.6 1 0 0 1 1 1 1 Transcriptional regulator HTH_11 PF08279.12 AHV92689.1 - 0.0019 18.1 0.0 0.004 17.1 0.0 1.5 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.7 AHV92689.1 - 0.0025 17.6 0.3 0.0025 17.6 0.3 2.8 3 1 0 3 3 3 1 MarR family HTH_5 PF01022.20 AHV92689.1 - 0.0054 16.6 0.0 0.11 12.4 0.0 2.5 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_DeoR PF08220.12 AHV92689.1 - 0.0066 16.2 0.0 0.015 15.1 0.0 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_29 PF13551.6 AHV92689.1 - 0.0086 16.1 2.2 0.21 11.6 0.0 3.1 3 1 0 3 3 3 1 Winged helix-turn helix HTH_IclR PF09339.10 AHV92689.1 - 0.0087 15.8 0.1 0.033 14.0 0.1 2.0 1 0 0 1 1 1 1 IclR helix-turn-helix domain EAP30 PF04157.16 AHV92689.1 - 0.0095 15.2 0.1 0.048 12.9 0.0 1.9 2 0 0 2 2 2 1 EAP30/Vps36 family TrmB PF01978.19 AHV92689.1 - 0.012 15.4 0.0 0.031 14.2 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_41 PF14502.6 AHV92689.1 - 0.013 15.2 0.0 0.027 14.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_20 PF12840.7 AHV92689.1 - 0.023 14.8 0.8 0.56 10.3 0.0 2.9 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_24 PF13412.6 AHV92689.1 - 0.031 13.8 0.0 0.061 12.9 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Fe_dep_repress PF01325.19 AHV92689.1 - 0.039 14.2 0.0 0.075 13.2 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_28 PF13518.6 AHV92689.1 - 0.041 14.0 0.4 0.83 9.8 0.0 3.0 4 0 0 4 4 3 0 Helix-turn-helix domain HTH_Crp_2 PF13545.6 AHV92689.1 - 0.065 13.2 0.5 0.35 10.9 0.0 2.3 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain AbiEi_4 PF13338.6 AHV92689.1 - 0.15 12.3 1.1 0.86 9.8 0.0 2.6 3 0 0 3 3 3 0 Transcriptional regulator, AbiEi antitoxin DUF1840 PF08895.11 AHV92690.1 - 1.2e-27 96.4 0.0 1.3e-27 96.2 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1840) Acetyltransf_11 PF13720.6 AHV92691.1 - 4e-26 91.3 0.0 6.2e-26 90.7 0.0 1.3 1 0 0 1 1 1 1 Udp N-acetylglucosamine O-acyltransferase; Domain 2 Hexapep PF00132.24 AHV92691.1 - 1.3e-21 75.4 18.0 2.2e-09 36.6 1.3 6.1 2 2 3 6 6 6 5 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 AHV92691.1 - 0.0074 16.0 6.6 0.13 12.0 1.6 4.3 3 1 1 4 4 4 1 Hexapeptide repeat of succinyl-transferase NodA PF02474.15 AHV92691.1 - 0.14 11.9 0.0 0.22 11.2 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein A (NodA) TonB_dep_Rec PF00593.24 AHV92692.1 - 2.7e-51 175.9 15.9 3e-51 175.8 15.9 1.0 1 0 0 1 1 1 1 TonB dependent receptor OMP_b-brl_3 PF14905.6 AHV92692.1 - 2e-06 27.1 4.2 4.6e-06 25.9 4.2 1.6 1 1 0 1 1 1 1 Outer membrane protein beta-barrel family OMP_b-brl PF13505.6 AHV92692.1 - 0.0011 19.1 10.3 0.0065 16.6 2.1 3.1 2 1 0 2 2 2 2 Outer membrane protein beta-barrel domain S-AdoMet_synt_C PF02773.16 AHV92693.1 - 1.1e-67 226.3 0.0 2.1e-67 225.4 0.0 1.5 1 0 0 1 1 1 1 S-adenosylmethionine synthetase, C-terminal domain S-AdoMet_synt_M PF02772.16 AHV92693.1 - 2.1e-46 157.1 0.0 6.1e-46 155.6 0.0 1.8 2 0 0 2 2 2 1 S-adenosylmethionine synthetase, central domain S-AdoMet_synt_N PF00438.20 AHV92693.1 - 1e-40 138.4 0.1 2.2e-40 137.4 0.1 1.6 1 0 0 1 1 1 1 S-adenosylmethionine synthetase, N-terminal domain adh_short PF00106.25 AHV92694.1 - 4e-32 111.3 0.6 4.4e-32 111.1 0.6 1.0 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 AHV92694.1 - 8.7e-28 97.5 0.5 1e-27 97.3 0.5 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 AHV92694.1 - 7e-05 22.8 0.5 0.00014 21.8 0.5 1.4 1 1 0 1 1 1 1 KR domain 3HCDH_N PF02737.18 AHV92694.1 - 0.0094 15.8 0.1 0.012 15.5 0.1 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain SDH_alpha PF03313.15 AHV92694.1 - 0.012 15.3 1.4 0.014 15.1 1.4 1.1 1 0 0 1 1 1 0 Serine dehydratase alpha chain PagL PF09411.10 AHV92696.1 - 1.7e-31 109.1 5.8 2.2e-31 108.8 5.8 1.2 1 0 0 1 1 1 1 Lipid A 3-O-deacylase (PagL) OMP_b-brl PF13505.6 AHV92696.1 - 0.024 14.8 9.3 0.17 12.0 9.3 2.0 1 1 0 1 1 1 0 Outer membrane protein beta-barrel domain RuvB_N PF05496.12 AHV92697.1 - 9.5e-83 275.7 0.1 1.3e-82 275.2 0.1 1.2 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_lid_4 PF17864.1 AHV92697.1 - 2.5e-32 110.4 1.5 5.4e-32 109.4 1.5 1.6 1 0 0 1 1 1 1 RuvB AAA lid domain RuvB_C PF05491.13 AHV92697.1 - 3.6e-27 94.0 0.0 8.4e-27 92.9 0.0 1.6 1 0 0 1 1 1 1 RuvB C-terminal winged helix domain AAA PF00004.29 AHV92697.1 - 1.1e-19 71.2 0.0 2.2e-19 70.2 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 AHV92697.1 - 3.3e-09 36.9 0.1 0.0011 18.9 0.0 2.3 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.21 AHV92697.1 - 4.4e-07 29.5 0.7 0.00068 19.1 0.0 2.5 1 1 2 3 3 3 2 Magnesium chelatase, subunit ChlI TIP49 PF06068.13 AHV92697.1 - 7.4e-06 25.4 0.7 3.7e-05 23.1 0.0 2.0 2 0 0 2 2 2 1 TIP49 P-loop domain AAA_16 PF13191.6 AHV92697.1 - 3e-05 24.5 1.6 0.0017 18.7 0.1 2.6 2 1 1 3 3 3 1 AAA ATPase domain Sigma54_activat PF00158.26 AHV92697.1 - 0.00015 21.5 0.1 0.58 9.8 0.0 2.2 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_22 PF13401.6 AHV92697.1 - 0.00026 21.3 0.5 0.16 12.3 0.0 2.6 1 1 1 2 2 2 1 AAA domain AAA_3 PF07726.11 AHV92697.1 - 0.0004 20.2 0.0 0.022 14.6 0.0 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 AHV92697.1 - 0.00058 19.8 0.0 0.00084 19.3 0.0 1.2 1 0 0 1 1 1 1 Rad17 P-loop domain DUF815 PF05673.13 AHV92697.1 - 0.00067 18.9 0.0 0.029 13.5 0.0 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF815) TsaE PF02367.17 AHV92697.1 - 0.0039 17.2 0.0 0.0068 16.4 0.0 1.3 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE Bac_DnaA PF00308.18 AHV92697.1 - 0.0052 16.7 0.1 0.31 10.9 0.0 2.7 3 0 0 3 3 3 1 Bacterial dnaA protein NTPase_1 PF03266.15 AHV92697.1 - 0.0057 16.6 0.2 0.098 12.6 0.0 2.2 1 1 1 2 2 2 1 NTPase IstB_IS21 PF01695.17 AHV92697.1 - 0.0062 16.3 0.3 0.045 13.5 0.3 2.1 1 1 0 1 1 1 1 IstB-like ATP binding protein RNA_helicase PF00910.22 AHV92697.1 - 0.007 16.7 0.0 0.012 16.0 0.0 1.3 1 0 0 1 1 1 1 RNA helicase AAA_14 PF13173.6 AHV92697.1 - 0.012 15.7 0.0 0.031 14.3 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.6 AHV92697.1 - 0.02 15.5 0.0 0.051 14.1 0.0 1.8 2 0 0 2 2 1 0 AAA domain AAA_19 PF13245.6 AHV92697.1 - 0.023 15.0 0.7 0.64 10.3 0.1 2.4 1 1 1 2 2 2 0 AAA domain Sigma54_activ_2 PF14532.6 AHV92697.1 - 0.024 14.8 0.0 0.038 14.1 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_28 PF13521.6 AHV92697.1 - 0.027 14.7 0.1 0.45 10.7 0.0 2.3 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 AHV92697.1 - 0.028 13.6 0.0 0.14 11.4 0.0 2.0 2 0 0 2 2 2 0 NB-ARC domain AAA_25 PF13481.6 AHV92697.1 - 0.036 13.6 1.1 0.16 11.5 0.1 2.3 2 1 1 3 3 3 0 AAA domain AAA_17 PF13207.6 AHV92697.1 - 0.048 14.1 0.1 0.16 12.4 0.0 1.9 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 AHV92697.1 - 0.053 13.4 0.0 0.098 12.6 0.0 1.4 1 0 0 1 1 1 0 NACHT domain ABC_tran PF00005.27 AHV92697.1 - 0.065 13.8 0.0 0.13 12.8 0.0 1.4 1 0 0 1 1 1 0 ABC transporter HTH_15 PF12324.8 AHV92697.1 - 0.067 13.2 0.0 0.19 11.7 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain of alkylmercury lyase ResIII PF04851.15 AHV92697.1 - 0.08 12.9 0.0 3.3 7.7 0.0 2.1 1 1 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_24 PF13479.6 AHV92697.1 - 0.098 12.4 0.0 0.25 11.1 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 AHV92697.1 - 0.12 12.5 0.0 0.3 11.2 0.0 1.7 2 0 0 2 2 1 0 AAA domain TniB PF05621.11 AHV92697.1 - 0.15 11.5 0.1 1.6 8.1 0.0 2.2 1 1 1 2 2 2 0 Bacterial TniB protein Parvo_NS1 PF01057.17 AHV92697.1 - 0.24 10.5 0.0 0.38 9.8 0.0 1.2 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 2CSK_N PF08521.10 AHV92698.1 - 6.1e-32 110.6 1.8 6.1e-32 110.6 1.8 2.3 2 1 0 2 2 2 1 Two-component sensor kinase N-terminal HATPase_c PF02518.26 AHV92698.1 - 2.4e-20 73.1 0.0 1e-19 71.1 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SBP_bac_11 PF13531.6 AHV92698.1 - 5.5e-18 65.6 1.7 5.5e-18 65.6 1.7 2.6 4 0 0 4 4 4 1 Bacterial extracellular solute-binding protein HisKA PF00512.25 AHV92698.1 - 6.7e-11 42.1 6.8 1.5e-10 41.0 4.3 2.8 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain SBP_bac_1 PF01547.25 AHV92698.1 - 6.1e-08 33.0 0.0 9.6e-08 32.3 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 AHV92698.1 - 5.5e-07 29.2 0.0 1.3e-06 28.0 0.0 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein HATPase_c_2 PF13581.6 AHV92698.1 - 1e-06 28.7 0.1 3.4e-06 27.0 0.1 1.9 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain SBP_bac_8 PF13416.6 AHV92698.1 - 3.9e-06 26.9 0.0 6.1e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein HATPase_c_5 PF14501.6 AHV92698.1 - 0.061 13.2 0.0 0.13 12.1 0.0 1.6 1 1 0 1 1 1 0 GHKL domain ECH_1 PF00378.20 AHV92699.1 - 1.8e-65 220.8 0.0 2.2e-65 220.5 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 AHV92699.1 - 6.3e-34 118.0 0.1 1.4e-27 97.1 0.0 2.0 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase Asp-Al_Ex PF06826.12 AHV92700.1 - 1.3e-52 178.0 38.2 6.5e-27 94.4 14.4 2.1 2 0 0 2 2 2 2 Predicted Permease Membrane Region TrkA_C PF02080.21 AHV92700.1 - 2.3e-13 49.8 0.5 9.7e-07 28.5 0.0 2.5 2 0 0 2 2 2 2 TrkA-C domain Ribosomal_L13 PF00572.18 AHV92702.1 - 1.2e-55 187.1 0.1 1.4e-55 186.9 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L13 DUF3659 PF12396.8 AHV92702.1 - 0.031 14.2 0.0 0.051 13.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3659) DUF3325 PF11804.8 AHV92703.1 - 1.7e-27 95.5 24.3 2e-27 95.3 24.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3325) Patched PF02460.18 AHV92703.1 - 0.022 12.9 1.8 0.025 12.7 1.8 1.1 1 0 0 1 1 1 0 Patched family TMEM43 PF07787.12 AHV92703.1 - 0.075 12.4 1.1 0.075 12.4 1.1 1.2 1 0 0 1 1 1 0 Transmembrane protein 43 PRA1 PF03208.19 AHV92703.1 - 0.23 11.1 4.8 0.098 12.3 2.5 1.5 1 1 1 2 2 2 0 PRA1 family protein DUF3995 PF13160.6 AHV92703.1 - 4.7 7.6 22.7 0.61 10.4 5.0 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3995) PdxA PF04166.12 AHV92704.1 - 3.9e-105 351.3 0.1 4.7e-105 351.0 0.1 1.0 1 0 0 1 1 1 1 Pyridoxal phosphate biosynthetic protein PdxA Lon_C PF05362.13 AHV92705.1 - 2e-71 239.8 0.1 3.8e-71 238.9 0.1 1.4 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain LON_substr_bdg PF02190.16 AHV92705.1 - 3.6e-31 108.7 0.0 6.5e-31 107.8 0.0 1.4 1 0 0 1 1 1 1 ATP-dependent protease La (LON) substrate-binding domain AAA PF00004.29 AHV92705.1 - 1.6e-19 70.7 0.0 3.2e-19 69.7 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ChlI PF13541.6 AHV92705.1 - 2e-07 30.9 0.1 4.9e-07 29.6 0.1 1.7 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase AAA_5 PF07728.14 AHV92705.1 - 4.1e-07 30.1 0.0 1.4e-06 28.4 0.0 2.0 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 AHV92705.1 - 0.0017 18.8 8.1 0.003 18.0 0.0 3.7 2 2 2 4 4 4 1 AAA ATPase domain AAA_PrkA PF08298.11 AHV92705.1 - 0.0021 17.0 0.0 0.0035 16.3 0.0 1.2 1 0 0 1 1 1 1 PrkA AAA domain AAA_2 PF07724.14 AHV92705.1 - 0.0043 17.2 0.0 0.012 15.7 0.0 1.7 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_22 PF13401.6 AHV92705.1 - 0.0043 17.3 0.6 2.1 8.6 0.0 3.0 2 1 1 3 3 3 1 AAA domain RuvB_N PF05496.12 AHV92705.1 - 0.0091 15.7 0.0 0.12 12.1 0.0 2.5 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_18 PF13238.6 AHV92705.1 - 0.022 15.3 0.0 0.051 14.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 AHV92705.1 - 0.033 13.9 0.0 0.066 12.9 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein NACHT PF05729.12 AHV92705.1 - 0.055 13.4 0.0 2.2 8.2 0.0 3.0 2 1 0 2 2 2 0 NACHT domain AAA_3 PF07726.11 AHV92705.1 - 0.11 12.3 0.0 0.25 11.2 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) FUSC PF04632.12 AHV92705.1 - 0.12 10.9 5.3 0.21 10.1 5.3 1.3 1 0 0 1 1 1 0 Fusaric acid resistance protein family Viral_helicase1 PF01443.18 AHV92705.1 - 0.13 12.0 0.0 0.2 11.3 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase RsgA_GTPase PF03193.16 AHV92705.1 - 0.15 12.0 0.0 0.32 10.9 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_23 PF13476.6 AHV92705.1 - 0.15 12.5 0.2 16 5.9 0.6 2.3 2 0 0 2 2 2 0 AAA domain adh_short_C2 PF13561.6 AHV92707.1 - 4.1e-46 157.4 0.8 5.2e-46 157.1 0.8 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 AHV92707.1 - 4.6e-39 133.9 0.2 7.8e-39 133.2 0.2 1.3 1 1 0 1 1 1 1 short chain dehydrogenase Epimerase PF01370.21 AHV92707.1 - 4.6e-08 32.8 0.0 1.6e-07 31.1 0.0 1.9 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 AHV92707.1 - 8.6e-05 22.5 1.3 0.00022 21.2 1.3 1.6 1 1 0 1 1 1 1 NAD(P)H-binding KR PF08659.10 AHV92707.1 - 0.00054 19.9 0.5 0.014 15.3 0.6 2.5 1 1 0 1 1 1 1 KR domain RmlD_sub_bind PF04321.17 AHV92707.1 - 0.016 14.3 0.0 0.035 13.2 0.0 1.5 1 0 0 1 1 1 0 RmlD substrate binding domain ABC_tran PF00005.27 AHV92708.1 - 1.9e-26 93.2 0.0 2.5e-26 92.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 AHV92708.1 - 2.6e-05 24.2 0.9 0.04 13.7 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 AHV92708.1 - 0.0015 18.2 0.1 0.0029 17.3 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 AHV92708.1 - 0.0045 17.4 0.1 0.0062 16.9 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 AHV92708.1 - 0.0059 16.1 0.1 0.95 8.8 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 AHV92708.1 - 0.015 15.2 0.0 0.024 14.5 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase Rad17 PF03215.15 AHV92708.1 - 0.025 14.5 0.2 0.22 11.4 0.0 2.0 2 0 0 2 2 2 0 Rad17 P-loop domain T2SSE PF00437.20 AHV92708.1 - 0.069 12.2 1.0 0.16 11.0 0.1 1.9 2 0 0 2 2 2 0 Type II/IV secretion system protein ATPase_2 PF01637.18 AHV92708.1 - 0.091 12.7 0.1 0.24 11.3 0.0 1.6 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea MMR_HSR1 PF01926.23 AHV92708.1 - 0.092 12.8 0.4 0.35 11.0 0.3 1.9 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA PF00004.29 AHV92708.1 - 0.12 12.8 0.2 0.62 10.5 0.2 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.6 AHV92708.1 - 0.13 12.7 0.1 0.2 12.1 0.1 1.2 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 AHV92708.1 - 0.14 12.5 1.1 17 5.8 0.5 2.7 2 1 0 2 2 2 0 AAA domain AAA_22 PF13401.6 AHV92708.1 - 0.16 12.2 0.7 0.33 11.2 0.2 1.7 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 AHV92708.1 - 0.24 10.9 1.1 0.38 10.3 0.1 1.8 2 1 0 2 2 2 0 AAA domain Methyltransf_31 PF13847.6 AHV92709.1 - 6.4e-17 61.8 0.0 8.8e-17 61.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 AHV92709.1 - 1.4e-16 61.0 0.0 2.3e-16 60.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 AHV92709.1 - 1.3e-15 57.7 0.0 1.9e-15 57.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 AHV92709.1 - 7e-14 52.2 0.0 1.1e-13 51.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 AHV92709.1 - 1.2e-12 48.4 0.0 2.2e-12 47.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 AHV92709.1 - 5.9e-07 29.2 0.0 1e-06 28.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain FtsJ PF01728.19 AHV92709.1 - 7.4e-07 29.5 0.0 9.7e-07 29.1 0.0 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase NodS PF05401.11 AHV92709.1 - 1.6e-05 24.7 0.0 4.6e-05 23.1 0.0 1.7 1 1 1 2 2 2 1 Nodulation protein S (NodS) Methyltransf_2 PF00891.18 AHV92709.1 - 0.00069 19.0 0.0 0.00096 18.5 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase domain PCMT PF01135.19 AHV92709.1 - 0.0022 17.8 0.0 0.0033 17.2 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_32 PF13679.6 AHV92709.1 - 0.0083 16.1 0.0 0.013 15.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.17 AHV92709.1 - 0.0086 15.6 0.0 0.037 13.5 0.0 1.8 2 0 0 2 2 2 1 Putative methyltransferase Ubie_methyltran PF01209.18 AHV92709.1 - 0.0096 15.3 0.0 0.016 14.5 0.0 1.3 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family MetW PF07021.12 AHV92709.1 - 0.022 14.3 0.0 0.03 13.9 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW rve PF00665.26 AHV92710.1 - 7.6e-21 74.5 0.5 2.3e-20 73.0 0.0 1.8 2 0 0 2 2 2 1 Integrase core domain rve_3 PF13683.6 AHV92710.1 - 3.6e-19 68.3 3.1 5.2e-19 67.8 3.1 1.2 1 0 0 1 1 1 1 Integrase core domain PG_binding_2 PF08823.11 AHV92710.1 - 0.021 15.1 0.0 0.031 14.6 0.0 1.3 1 0 0 1 1 1 0 Putative peptidoglycan binding domain DDE_Tnp_1_2 PF13586.6 AHV92710.1 - 0.091 13.1 0.4 0.22 11.9 0.1 1.8 1 1 1 2 2 2 0 Transposase DDE domain YgbB PF02542.16 AHV92711.1 - 2.7e-64 216.1 0.4 3e-64 216.0 0.4 1.0 1 0 0 1 1 1 1 YgbB family Proton_antipo_M PF00361.20 AHV92712.1 - 3.3e-86 289.1 23.0 3.3e-86 289.1 23.0 2.2 2 0 0 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 AHV92712.1 - 3.5e-25 87.9 5.2 3.5e-25 87.9 5.2 3.1 3 0 0 3 3 3 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Proton_antipo_C PF01010.19 AHV92712.1 - 3.9e-05 23.4 2.7 6e-05 22.8 0.0 2.6 2 1 1 3 3 3 1 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus ABC_tran PF00005.27 AHV92713.1 - 1.2e-28 100.4 0.0 1.7e-28 99.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 AHV92713.1 - 1.3e-08 35.0 1.6 0.00063 19.6 0.1 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 AHV92713.1 - 0.00011 22.8 0.3 0.0002 21.9 0.3 1.4 1 0 0 1 1 1 1 AAA domain ABC_ATPase PF09818.9 AHV92713.1 - 0.00028 19.8 0.1 0.24 10.2 0.0 2.7 2 1 0 2 2 2 2 Predicted ATPase of the ABC class SMC_N PF02463.19 AHV92713.1 - 0.00097 18.6 0.6 0.027 13.9 0.6 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 AHV92713.1 - 0.0032 17.4 0.0 0.006 16.5 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA PF00004.29 AHV92713.1 - 0.0038 17.7 0.0 0.02 15.3 0.0 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.6 AHV92713.1 - 0.0042 17.1 0.1 0.14 12.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 AHV92713.1 - 0.0058 16.4 0.0 0.011 15.4 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain ATPase_2 PF01637.18 AHV92713.1 - 0.0078 16.1 0.1 0.014 15.3 0.1 1.4 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_16 PF13191.6 AHV92713.1 - 0.014 15.8 0.0 0.021 15.2 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_15 PF13175.6 AHV92713.1 - 0.017 14.8 0.0 0.023 14.4 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.6 AHV92713.1 - 0.022 15.0 0.1 0.053 13.8 0.1 2.0 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.15 AHV92713.1 - 0.044 13.7 0.0 0.078 12.9 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain RecA PF00154.21 AHV92713.1 - 0.048 13.1 0.0 0.072 12.5 0.0 1.2 1 0 0 1 1 1 0 recA bacterial DNA recombination protein AAA_25 PF13481.6 AHV92713.1 - 0.05 13.2 0.3 0.36 10.4 0.0 2.3 2 1 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 AHV92713.1 - 0.073 13.5 0.0 0.13 12.6 0.0 1.5 1 0 0 1 1 1 0 RNA helicase SbcCD_C PF13558.6 AHV92713.1 - 0.082 13.2 0.7 0.99 9.7 0.7 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit MMR_HSR1 PF01926.23 AHV92713.1 - 0.098 12.7 0.1 0.23 11.5 0.1 1.6 2 0 0 2 2 1 0 50S ribosome-binding GTPase Mg_chelatase PF01078.21 AHV92713.1 - 0.14 11.5 0.1 1.2 8.5 0.0 2.0 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI NB-ARC PF00931.22 AHV92713.1 - 0.19 10.9 0.1 0.33 10.1 0.1 1.3 1 0 0 1 1 1 0 NB-ARC domain Dynamin_N PF00350.23 AHV92713.1 - 0.19 11.8 0.1 0.34 10.9 0.1 1.4 1 0 0 1 1 1 0 Dynamin family Glycos_transf_N PF04413.16 AHV92714.1 - 4.2e-54 182.9 0.1 6.5e-54 182.3 0.1 1.2 1 0 0 1 1 1 1 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) Glycos_transf_1 PF00534.20 AHV92714.1 - 0.0034 16.9 0.0 0.006 16.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 AHV92714.1 - 0.0084 16.5 1.4 0.069 13.6 0.1 2.4 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 AHV92714.1 - 0.0085 16.5 3.0 0.022 15.2 0.1 2.9 3 1 1 4 4 4 1 Glycosyl transferases group 1 Aldo_ket_red PF00248.21 AHV92715.1 - 2.5e-21 76.1 0.0 3e-21 75.9 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Methyltransf_7 PF03492.15 AHV92716.1 - 0.054 12.7 0.0 0.054 12.7 0.0 1.0 1 0 0 1 1 1 0 SAM dependent carboxyl methyltransferase Abhydrolase_6 PF12697.7 AHV92717.1 - 8.6e-19 69.0 3.6 1.1e-18 68.7 3.6 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 AHV92717.1 - 5e-17 62.4 0.0 8.6e-17 61.6 0.0 1.4 1 1 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 AHV92717.1 - 3.6e-06 26.4 0.0 1.2e-05 24.7 0.0 1.8 1 1 0 1 1 1 1 Serine aminopeptidase, S33 KdpA PF03814.15 AHV92718.1 - 3.8e-241 801.0 25.0 5.7e-241 800.5 25.0 1.2 1 0 0 1 1 1 1 Potassium-transporting ATPase A subunit TctC PF03401.14 AHV92719.1 - 2.7e-71 239.9 0.1 3.1e-71 239.6 0.1 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor SSB PF00436.25 AHV92720.1 - 6.8e-43 145.0 0.1 8.1e-43 144.7 0.1 1.1 1 0 0 1 1 1 1 Single-strand binding protein family tRNA_anti-codon PF01336.25 AHV92720.1 - 0.061 13.3 0.0 0.087 12.8 0.0 1.3 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain TctC PF03401.14 AHV92721.1 - 3.1e-63 213.4 0.2 3.5e-63 213.2 0.2 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor Phosphonate-bd PF12974.7 AHV92721.1 - 0.16 11.5 0.0 0.79 9.3 0.0 2.0 2 0 0 2 2 2 0 ABC transporter, phosphonate, periplasmic substrate-binding protein Ysc84 PF04366.12 AHV92722.1 - 8.1e-16 57.9 1.1 8.1e-16 57.9 1.1 1.9 2 1 0 2 2 2 1 Las17-binding protein actin regulator DUF1134 PF06577.12 AHV92722.1 - 0.00029 20.6 0.7 0.00036 20.3 0.7 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1134) Thiolase_N PF00108.23 AHV92723.1 - 7.9e-75 251.6 0.4 1e-74 251.2 0.4 1.1 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 AHV92723.1 - 1.3e-45 154.0 1.5 2.6e-45 153.1 1.5 1.5 1 0 0 1 1 1 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 AHV92723.1 - 9.5e-05 22.1 2.2 0.0001 22.0 0.8 1.7 2 0 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain bPH_6 PF10756.9 AHV92724.1 - 0.0071 16.4 0.8 0.016 15.3 0.8 1.6 1 0 0 1 1 1 1 Bacterial PH domain SIMPL PF04402.14 AHV92725.1 - 5.5e-27 95.5 1.3 7e-27 95.2 1.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF541) Epimerase PF01370.21 AHV92726.1 - 1.1e-41 143.0 0.0 1.3e-41 142.7 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 AHV92726.1 - 7.1e-17 61.8 0.0 9.4e-17 61.4 0.0 1.1 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 AHV92726.1 - 4.9e-12 45.6 0.0 7.8e-12 44.9 0.0 1.4 1 1 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 AHV92726.1 - 3.9e-09 35.9 0.0 5.4e-09 35.4 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 AHV92726.1 - 1.1e-05 24.7 0.0 0.00019 20.7 0.0 2.6 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 AHV92726.1 - 2.8e-05 23.4 0.1 0.037 13.2 0.0 2.6 2 1 0 2 2 2 2 Male sterility protein Ldh_1_N PF00056.23 AHV92726.1 - 0.19 11.8 0.1 0.32 11.1 0.1 1.3 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain Peripla_BP_6 PF13458.6 AHV92727.1 - 9.9e-70 235.9 0.5 1.1e-69 235.7 0.5 1.0 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 AHV92727.1 - 4.5e-30 104.8 0.0 7.2e-19 68.0 0.0 2.0 2 0 0 2 2 2 2 Periplasmic binding protein domain ANF_receptor PF01094.28 AHV92727.1 - 1.1e-10 41.1 0.0 1.7e-10 40.5 0.0 1.2 1 0 0 1 1 1 1 Receptor family ligand binding region ABM PF03992.16 AHV92728.1 - 1.9e-11 43.9 0.0 2.2e-11 43.7 0.0 1.1 1 0 0 1 1 1 1 Antibiotic biosynthesis monooxygenase PTA_PTB PF01515.19 AHV92729.1 - 2.2e-51 175.1 0.5 2.5e-51 174.9 0.5 1.0 1 0 0 1 1 1 1 Phosphate acetyl/butaryl transferase rve_3 PF13683.6 AHV92730.1 - 8.3e-32 108.8 0.1 4.5e-31 106.4 0.0 2.2 2 0 0 2 2 2 1 Integrase core domain rve PF00665.26 AHV92730.1 - 4.2e-25 88.2 0.0 1.1e-23 83.7 0.0 2.2 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 AHV92730.1 - 1.8e-11 44.0 8.6 3.6e-11 43.0 8.6 1.5 1 0 0 1 1 1 1 HTH-like domain rve_2 PF13333.6 AHV92730.1 - 5.8e-07 29.6 0.0 1.3e-06 28.5 0.0 1.6 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AHV92730.1 - 0.00041 20.6 0.0 0.00091 19.5 0.0 1.6 1 1 1 2 2 2 1 DDE domain Rhomboid_SP PF12595.8 AHV92730.1 - 0.0081 15.6 0.3 2.2 7.6 0.0 2.3 1 1 0 2 2 2 2 Rhomboid serine protease DUF1780 PF08682.10 AHV92730.1 - 0.13 11.9 1.0 1.6 8.3 0.3 2.2 2 0 0 2 2 2 0 Putative endonuclease, protein of unknown function (DUF1780) Peripla_BP_6 PF13458.6 AHV92731.1 - 1e-56 193.1 8.9 1.2e-56 192.8 8.9 1.0 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 AHV92731.1 - 1.3e-18 67.1 0.1 1.4e-18 67.1 0.1 1.1 1 0 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.28 AHV92731.1 - 6.2e-05 22.2 0.0 0.00027 20.2 0.0 1.8 1 1 0 1 1 1 1 Receptor family ligand binding region DinI PF06183.13 AHV92731.1 - 0.16 12.3 0.0 0.51 10.7 0.0 1.8 2 0 0 2 2 2 0 DinI-like family Cytidylate_kin PF02224.18 AHV92732.1 - 7.9e-72 241.4 0.3 8.9e-72 241.2 0.3 1.0 1 0 0 1 1 1 1 Cytidylate kinase Cytidylate_kin2 PF13189.6 AHV92732.1 - 1.1e-07 32.2 0.4 2.8e-07 30.8 0.4 1.7 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_33 PF13671.6 AHV92732.1 - 0.0032 17.6 0.1 0.0043 17.2 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.6 AHV92732.1 - 0.0038 17.7 0.1 0.015 15.7 0.0 2.0 2 1 0 2 2 2 1 AAA domain AAA_18 PF13238.6 AHV92732.1 - 0.0058 17.2 0.0 0.025 15.1 0.0 2.0 1 1 0 1 1 1 1 AAA domain ADK PF00406.22 AHV92732.1 - 0.019 15.1 0.0 0.046 13.8 0.0 1.6 1 0 0 1 1 1 0 Adenylate kinase GGDEF_2 PF17853.1 AHV92732.1 - 0.022 15.0 1.0 0.062 13.6 1.1 1.8 2 1 0 2 2 2 0 GGDEF-like domain dNK PF01712.19 AHV92732.1 - 0.071 13.0 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 Deoxynucleoside kinase Peripla_BP_3 PF13377.6 AHV92733.1 - 1.4e-21 77.5 0.1 4.3e-21 76.0 0.1 1.9 2 0 0 2 2 2 1 Periplasmic binding protein-like domain Peripla_BP_1 PF00532.21 AHV92733.1 - 5e-19 68.8 0.1 1e-18 67.8 0.0 1.5 2 0 0 2 2 2 1 Periplasmic binding proteins and sugar binding domain of LacI family Peripla_BP_4 PF13407.6 AHV92733.1 - 6.3e-19 68.5 0.0 1.3e-18 67.5 0.0 1.5 1 1 1 2 2 2 1 Periplasmic binding protein domain LacI PF00356.21 AHV92733.1 - 3.8e-15 55.4 0.4 1.2e-14 53.7 0.5 1.8 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family HTH_3 PF01381.22 AHV92733.1 - 0.00099 19.1 0.3 0.0032 17.5 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.6 AHV92733.1 - 0.0052 17.1 3.4 0.0064 16.8 0.1 2.7 3 0 0 3 3 3 1 Helix-turn-helix domain MarR_2 PF12802.7 AHV92733.1 - 0.017 15.0 3.4 0.061 13.2 0.1 3.0 3 0 0 3 3 3 0 MarR family RPN13_C PF16550.5 AHV92733.1 - 0.021 15.0 0.1 0.064 13.4 0.1 1.8 1 1 0 1 1 1 0 UCH-binding domain TetR_N PF00440.23 AHV92733.1 - 0.034 13.9 0.2 0.11 12.4 0.2 1.8 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_10 PF04967.12 AHV92733.1 - 0.035 13.9 0.0 0.12 12.2 0.0 1.9 2 0 0 2 2 2 0 HTH DNA binding domain HTH_Crp_2 PF13545.6 AHV92733.1 - 0.051 13.6 0.0 0.22 11.5 0.0 2.1 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_24 PF13412.6 AHV92733.1 - 0.14 11.7 0.1 0.5 10.0 0.1 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_Tnp_ISL3 PF13542.6 AHV92733.1 - 0.2 11.1 2.1 0.32 10.4 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 LysR_substrate PF03466.20 AHV92734.1 - 6e-35 120.5 0.5 7.9e-35 120.1 0.5 1.2 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 AHV92734.1 - 4.6e-20 71.3 0.5 7.6e-20 70.6 0.5 1.4 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_psq PF05225.16 AHV92734.1 - 0.035 13.9 0.0 0.064 13.0 0.0 1.3 1 0 0 1 1 1 0 helix-turn-helix, Psq domain HTH_8 PF02954.19 AHV92734.1 - 0.048 13.4 0.2 0.14 12.0 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family MarR_2 PF12802.7 AHV92734.1 - 0.051 13.5 0.1 0.16 11.9 0.1 1.8 1 0 0 1 1 1 0 MarR family HTH_IclR PF09339.10 AHV92734.1 - 0.072 12.9 0.3 0.38 10.6 0.0 2.3 3 0 0 3 3 3 0 IclR helix-turn-helix domain HTH_30 PF13556.6 AHV92734.1 - 0.1 12.4 0.2 0.3 10.9 0.1 1.8 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain HTH_24 PF13412.6 AHV92734.1 - 0.11 12.1 0.0 0.19 11.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 AHV92734.1 - 0.12 12.4 0.0 0.31 11.1 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain POTRA PF07244.15 AHV92735.1 - 4.2e-11 43.3 0.0 0.003 18.1 0.0 3.2 3 0 0 3 3 3 3 Surface antigen variable number repeat POTRA_TamA_1 PF17243.2 AHV92735.1 - 2.1e-06 27.7 0.0 5.3e-06 26.4 0.0 1.6 1 0 0 1 1 1 1 POTRA domain TamA domain 1 rve PF00665.26 AHV92736.1 - 7.9e-14 51.9 0.0 3.1e-12 46.7 0.0 2.1 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 AHV92736.1 - 8.9e-12 45.0 8.6 1.8e-11 44.0 8.6 1.5 1 0 0 1 1 1 1 HTH-like domain Rhomboid_SP PF12595.8 AHV92736.1 - 0.0029 17.0 0.3 1.1 8.6 0.0 2.2 1 1 0 2 2 2 2 Rhomboid serine protease rve_3 PF13683.6 AHV92737.1 - 4e-26 90.6 0.1 4.7e-26 90.3 0.1 1.1 1 0 0 1 1 1 1 Integrase core domain rve_2 PF13333.6 AHV92737.1 - 5.8e-08 32.8 0.0 7.4e-08 32.5 0.0 1.1 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AHV92737.1 - 0.003 17.8 0.0 0.0035 17.6 0.0 1.1 1 0 0 1 1 1 1 DDE domain TctC PF03401.14 AHV92738.1 - 2.8e-82 275.9 0.2 3.3e-82 275.6 0.2 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor EAL PF00563.20 AHV92739.1 - 1.6e-72 243.9 0.5 2.5e-72 243.2 0.5 1.3 1 0 0 1 1 1 1 EAL domain GGDEF PF00990.21 AHV92739.1 - 4.5e-35 120.8 0.0 7.4e-35 120.1 0.0 1.4 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain MHYT PF03707.16 AHV92739.1 - 1.5e-27 95.5 46.3 3.7e-14 52.6 6.9 5.7 5 0 0 5 5 5 4 Bacterial signalling protein N terminal repeat MraZ PF02381.18 AHV92740.1 - 2.4e-24 85.1 0.0 4.3e-11 42.6 0.0 2.1 2 0 0 2 2 2 2 MraZ protein, putative antitoxin-like DUF35_N PF12172.8 AHV92740.1 - 0.095 12.6 0.2 0.2 11.6 0.2 1.5 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DctQ PF04290.12 AHV92741.1 - 8.2e-23 80.8 3.7 1.2e-22 80.3 3.7 1.2 1 0 0 1 1 1 1 Tripartite ATP-independent periplasmic transporters, DctQ component CBP_BcsF PF11120.8 AHV92741.1 - 0.045 13.9 0.4 0.045 13.9 0.4 2.6 2 1 1 3 3 3 0 Cellulose biosynthesis protein BcsF BIV_Env PF05858.12 AHV92741.1 - 0.12 10.5 1.8 0.14 10.3 1.8 1.0 1 0 0 1 1 1 0 Bovine immunodeficiency virus surface protein (SU) HKR_ArcB_TM PF18415.1 AHV92741.1 - 1.9 9.3 8.0 12 6.8 4.0 2.2 1 1 1 2 2 2 0 Histidine kinase receptor ArcB trans-membrane domain DUF202 PF02656.15 AHV92741.1 - 3.3 8.2 8.1 5.7 7.5 0.5 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF202) SBP_bac_6 PF13343.6 AHV92742.1 - 2e-28 99.5 0.1 2.6e-28 99.1 0.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 AHV92742.1 - 3.8e-16 59.9 3.3 4.8e-16 59.6 3.3 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 AHV92742.1 - 1.7e-15 57.6 1.2 2.2e-15 57.2 1.2 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 AHV92742.1 - 1.8e-13 50.8 0.2 2.3e-13 50.4 0.2 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein NCBP3 PF10309.9 AHV92742.1 - 0.12 12.3 0.1 0.29 11.0 0.1 1.6 1 0 0 1 1 1 0 Nuclear cap-binding protein subunit 3 Ribosomal_S16 PF00886.19 AHV92743.1 - 4.8e-23 81.0 0.1 5.8e-23 80.7 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S16 rve PF00665.26 AHV92744.1 - 7.9e-14 51.9 0.0 3.1e-12 46.7 0.0 2.1 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 AHV92744.1 - 9.1e-12 44.9 8.6 1.8e-11 44.0 8.6 1.5 1 0 0 1 1 1 1 HTH-like domain Rhomboid_SP PF12595.8 AHV92744.1 - 0.0029 17.0 0.4 0.96 8.8 0.0 2.2 1 1 1 2 2 2 2 Rhomboid serine protease TctC PF03401.14 AHV92745.1 - 2.4e-79 266.2 0.4 3e-79 265.9 0.4 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor DUF883 PF05957.13 AHV92747.1 - 1.3e-31 109.1 1.8 1.4e-31 108.9 1.8 1.0 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF883) Rx_N PF18052.1 AHV92747.1 - 0.074 13.3 0.9 0.1 12.9 0.9 1.3 1 0 0 1 1 1 0 Rx N-terminal domain DUF4715 PF15835.5 AHV92747.1 - 0.12 12.4 0.1 0.14 12.3 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4715) YtxH PF12732.7 AHV92747.1 - 6.9 7.3 9.2 6.2 7.4 2.6 2.9 2 1 0 2 2 2 0 YtxH-like protein LZ_Tnp_IS481 PF13011.6 AHV92748.1 - 2.3e-22 79.3 2.6 4.6e-20 71.9 0.4 2.3 1 1 1 2 2 2 1 leucine-zipper of insertion element IS481 HTH_23 PF13384.6 AHV92748.1 - 2.6e-17 62.1 4.4 6.1e-08 32.2 0.1 2.3 2 0 0 2 2 2 2 Homeodomain-like domain HTH_28 PF13518.6 AHV92748.1 - 1.3e-16 60.4 2.6 2.9e-11 43.3 0.1 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_29 PF13551.6 AHV92748.1 - 3.9e-12 46.0 0.6 1.3e-06 28.3 0.0 2.3 2 0 0 2 2 2 2 Winged helix-turn helix HTH_32 PF13565.6 AHV92748.1 - 2.3e-11 44.1 0.7 4.3e-11 43.3 0.7 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_38 PF13936.6 AHV92748.1 - 2.1e-06 27.4 1.8 4.5e-06 26.3 1.1 1.9 2 1 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 AHV92748.1 - 4.2e-06 26.5 3.4 5e-05 23.1 1.2 2.3 2 0 0 2 2 2 1 MarR family HTH_Tnp_ISL3 PF13542.6 AHV92748.1 - 5.9e-06 25.6 1.9 0.0011 18.4 0.6 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 Sigma70_r4_2 PF08281.12 AHV92748.1 - 1.2e-05 24.9 0.1 0.0035 17.0 0.3 2.3 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 AHV92748.1 - 2.3e-05 23.8 0.1 0.00031 20.2 0.2 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 YdaS_antitoxin PF15943.5 AHV92748.1 - 9.9e-05 22.1 0.3 0.13 12.1 0.0 2.6 2 0 0 2 2 2 2 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_24 PF13412.6 AHV92748.1 - 0.00012 21.5 0.2 0.0012 18.4 0.3 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_3 PF01381.22 AHV92748.1 - 0.00013 22.0 0.7 0.0076 16.3 0.3 2.4 2 0 0 2 2 2 1 Helix-turn-helix HTH_Crp_2 PF13545.6 AHV92748.1 - 0.0002 21.3 0.4 0.0015 18.5 0.2 2.2 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_31 PF13560.6 AHV92748.1 - 0.00027 21.2 6.9 0.0014 18.9 2.8 2.9 2 2 0 2 2 2 1 Helix-turn-helix domain Trp_repressor PF01371.19 AHV92748.1 - 0.00036 20.6 0.2 0.0033 17.5 0.1 2.0 2 0 0 2 2 2 1 Trp repressor protein LacI PF00356.21 AHV92748.1 - 0.00049 19.8 1.2 0.0027 17.5 0.7 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family CENP-B_N PF04218.13 AHV92748.1 - 0.00051 19.6 0.0 0.88 9.2 0.1 2.3 2 0 0 2 2 2 2 CENP-B N-terminal DNA-binding domain HTH_5 PF01022.20 AHV92748.1 - 0.00067 19.5 0.0 0.5 10.3 0.0 2.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.19 AHV92748.1 - 0.00069 19.8 0.0 0.018 15.2 0.0 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain SpoIIID PF12116.8 AHV92748.1 - 0.00094 19.2 0.0 0.54 10.4 0.0 2.2 2 0 0 2 2 2 1 Stage III sporulation protein D HTH_IclR PF09339.10 AHV92748.1 - 0.00099 18.9 1.6 0.019 14.7 0.7 2.5 2 0 0 2 2 2 1 IclR helix-turn-helix domain RepB PF07506.11 AHV92748.1 - 0.0011 19.1 0.2 0.21 11.6 0.1 2.3 1 1 1 2 2 2 1 RepB plasmid partitioning protein HTH_11 PF08279.12 AHV92748.1 - 0.0014 18.5 0.5 0.008 16.1 0.5 2.1 2 0 0 2 2 2 1 HTH domain HTH_psq PF05225.16 AHV92748.1 - 0.0016 18.1 0.5 1.3 8.8 0.5 2.3 2 0 0 2 2 2 1 helix-turn-helix, Psq domain GntR PF00392.21 AHV92748.1 - 0.0021 17.6 0.8 0.28 10.8 0.4 2.4 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_AsnC-type PF13404.6 AHV92748.1 - 0.0023 17.7 3.1 0.03 14.2 1.4 2.6 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_Tnp_1 PF01527.20 AHV92748.1 - 0.0025 18.1 0.4 0.052 13.9 0.0 2.2 1 1 1 2 2 2 1 Transposase HTH_17 PF12728.7 AHV92748.1 - 0.003 17.7 0.1 3.5 7.9 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_10 PF04967.12 AHV92748.1 - 0.0047 16.7 0.1 0.028 14.2 0.2 2.0 2 0 0 2 2 2 1 HTH DNA binding domain HTH_35 PF13693.6 AHV92748.1 - 0.0051 16.8 0.9 0.038 14.0 0.6 2.2 1 1 1 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_30 PF13556.6 AHV92748.1 - 0.0058 16.4 0.1 0.97 9.3 0.0 2.3 2 0 0 2 2 2 1 PucR C-terminal helix-turn-helix domain UPF0175 PF03683.13 AHV92748.1 - 0.0061 16.2 0.4 0.052 13.3 0.1 2.2 2 1 1 3 3 2 1 Uncharacterised protein family (UPF0175) HTH_37 PF13744.6 AHV92748.1 - 0.0076 16.2 0.1 0.065 13.2 0.1 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Tnp_4 PF13613.6 AHV92748.1 - 0.0098 15.6 0.1 0.038 13.7 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix of DDE superfamily endonuclease Crp PF00325.20 AHV92748.1 - 0.015 15.0 1.5 0.036 13.7 0.5 2.1 2 0 0 2 2 2 0 Bacterial regulatory proteins, crp family HTH_36 PF13730.6 AHV92748.1 - 0.016 15.1 0.0 0.32 11.0 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain MerR PF00376.23 AHV92748.1 - 0.017 14.9 1.3 1.9 8.3 0.0 2.8 3 0 0 3 3 2 0 MerR family regulatory protein MarR PF01047.22 AHV92748.1 - 0.02 14.8 0.1 0.08 12.9 0.1 2.0 2 0 0 2 2 2 0 MarR family P22_Cro PF14549.6 AHV92748.1 - 0.027 14.3 2.0 5.1 7.0 0.1 2.3 2 0 0 2 2 2 0 DNA-binding transcriptional regulator Cro DUF746 PF05344.11 AHV92748.1 - 0.036 13.9 0.1 0.54 10.1 0.0 2.2 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) HTH_1 PF00126.27 AHV92748.1 - 0.046 13.7 3.0 2.7 8.0 0.5 2.4 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_DeoR PF08220.12 AHV92748.1 - 0.054 13.3 0.1 5.6 6.8 0.0 2.2 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain Glyc_hyd_38C_2 PF18230.1 AHV92748.1 - 0.059 13.5 0.0 0.63 10.2 0.0 2.1 2 0 0 2 2 2 0 Glycosyl hydrolases family 38 C-terminal sub-domain HTH_Tnp_Tc3_2 PF01498.18 AHV92748.1 - 0.076 13.3 1.5 0.24 11.7 0.1 2.5 2 0 0 2 2 2 0 Transposase Sigma54_DBD PF04552.13 AHV92748.1 - 0.09 12.5 0.1 0.16 11.7 0.1 1.4 1 0 0 1 1 1 0 Sigma-54, DNA binding domain HTH_8 PF02954.19 AHV92748.1 - 0.098 12.5 0.9 8.2 6.3 0.8 2.3 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family TrmB PF01978.19 AHV92748.1 - 0.11 12.3 0.0 0.34 10.8 0.1 1.7 2 0 0 2 2 1 0 Sugar-specific transcriptional regulator TrmB HTH_7 PF02796.15 AHV92748.1 - 0.12 12.5 0.4 0.28 11.3 0.1 1.7 2 0 0 2 2 1 0 Helix-turn-helix domain of resolvase DUF1804 PF08822.11 AHV92748.1 - 0.13 12.2 0.2 10 6.1 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1804) HTH_26 PF13443.6 AHV92748.1 - 0.19 12.2 0.0 2 8.9 0.1 2.1 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain DUF977 PF06163.11 AHV92748.1 - 0.2 11.6 0.6 11 6.0 0.1 2.3 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF977) MerR_1 PF13411.6 AHV92748.1 - 0.23 11.6 0.9 1.4 9.1 0.0 2.3 3 0 0 3 3 2 0 MerR HTH family regulatory protein Methyltransf_5 PF01795.19 AHV92749.1 - 3.6e-99 332.2 0.0 4e-99 332.0 0.0 1.0 1 0 0 1 1 1 1 MraW methylase family Methyltransf_31 PF13847.6 AHV92749.1 - 1.2e-05 25.2 0.0 0.0034 17.2 0.0 2.5 2 1 0 2 2 2 2 Methyltransferase domain Methyltransf_25 PF13649.6 AHV92749.1 - 5.5e-05 23.8 0.1 0.0016 19.1 0.0 2.6 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_19 PF04672.12 AHV92749.1 - 0.0013 18.2 0.1 0.005 16.4 0.0 1.9 2 0 0 2 2 2 1 S-adenosyl methyltransferase CRISPR_Cse2 PF09485.10 AHV92749.1 - 0.011 16.3 6.0 0.022 15.3 1.7 2.3 1 1 1 2 2 2 0 CRISPR-associated protein Cse2 (CRISPR_cse2) rRNA_methylase PF06962.12 AHV92749.1 - 0.02 14.9 0.0 1.8 8.6 0.0 2.2 2 0 0 2 2 2 0 Putative rRNA methylase Methyltransf_11 PF08241.12 AHV92749.1 - 0.034 14.8 0.1 5.2 7.8 0.0 2.6 2 0 0 2 2 2 0 Methyltransferase domain Ubie_methyltran PF01209.18 AHV92749.1 - 0.057 12.8 0.0 12 5.2 0.0 2.3 2 0 0 2 2 2 0 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 AHV92749.1 - 0.11 13.3 0.0 14 6.5 0.0 2.7 3 0 0 3 3 3 0 Methyltransferase domain COX1 PF00115.20 AHV92750.1 - 5.8e-143 476.8 69.6 5.8e-143 476.8 69.6 2.6 3 0 0 3 3 3 1 Cytochrome C and Quinol oxidase polypeptide I DUF3611 PF12263.8 AHV92750.1 - 0.074 12.9 0.3 0.074 12.9 0.3 4.7 5 1 1 6 6 6 0 Protein of unknown function (DUF3611) DDE_Tnp_ISL3 PF01610.17 AHV92751.1 - 6.7e-65 219.2 1.2 9.3e-65 218.7 0.3 1.6 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV92751.1 - 1.4e-11 43.6 0.1 3.6e-11 42.3 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV92751.1 - 5.3e-09 36.6 11.2 1.1e-08 35.6 11.2 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV92751.1 - 0.0056 16.7 0.2 0.016 15.3 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain NOB1_Zn_bind PF08772.11 AHV92751.1 - 0.017 15.2 0.2 1.2 9.3 0.0 2.5 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like SLT_L PF14718.6 AHV92751.1 - 0.023 14.8 1.3 0.023 14.8 1.3 1.8 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain zf-IS66 PF13005.7 AHV92751.1 - 8.2 6.9 9.6 3.6 8.1 6.6 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Bac_transf PF02397.16 AHV92752.1 - 2.3e-48 164.2 0.0 2.6e-48 164.1 0.0 1.0 1 0 0 1 1 1 1 Bacterial sugar transferase CsbD PF05532.12 AHV92753.1 - 2e-19 69.2 5.7 2.2e-19 69.1 5.7 1.1 1 0 0 1 1 1 1 CsbD-like PqqD PF05402.12 AHV92753.1 - 0.022 15.0 0.1 0.048 14.0 0.1 1.7 1 1 0 1 1 1 0 Coenzyme PQQ synthesis protein D (PqqD) COX4 PF02936.14 AHV92753.1 - 0.036 14.1 0.6 0.04 13.9 0.6 1.3 1 1 0 1 1 1 0 Cytochrome c oxidase subunit IV Aldedh PF00171.22 AHV92753.1 - 0.099 11.1 0.1 0.1 11.1 0.1 1.0 1 0 0 1 1 1 0 Aldehyde dehydrogenase family SET PF00856.28 AHV92754.1 - 5.1e-20 72.5 0.1 5.4e-19 69.2 0.1 2.0 1 1 0 1 1 1 1 SET domain SAF PF08666.12 AHV92754.1 - 5.1e-05 23.8 0.0 0.38 11.4 0.0 2.5 2 1 0 2 2 2 2 SAF domain MarR PF01047.22 AHV92755.1 - 9.8e-11 41.4 0.0 3.2e-10 39.8 0.0 1.8 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.7 AHV92755.1 - 3e-09 36.6 1.4 5.4e-09 35.8 0.5 1.8 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.6 AHV92755.1 - 1.1e-07 32.2 0.0 2.7e-07 31.0 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 AHV92755.1 - 0.00097 19.1 0.0 0.0022 18.0 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain GntR PF00392.21 AHV92755.1 - 0.0022 17.6 1.2 0.051 13.2 0.1 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_CodY PF08222.11 AHV92755.1 - 0.012 15.2 1.1 0.033 13.7 0.1 2.0 2 0 0 2 2 2 0 CodY helix-turn-helix domain TrmB PF01978.19 AHV92755.1 - 0.013 15.3 0.1 1.2 9.1 0.0 2.2 1 1 1 2 2 2 0 Sugar-specific transcriptional regulator TrmB ArsC PF03960.15 AHV92756.1 - 4.2e-17 61.9 0.0 5e-17 61.7 0.0 1.1 1 0 0 1 1 1 1 ArsC family Glutaredoxin PF00462.24 AHV92756.1 - 0.016 15.4 0.0 0.028 14.6 0.0 1.4 1 1 0 1 1 1 0 Glutaredoxin SWIB PF02201.18 AHV92757.1 - 1.1e-28 98.9 0.0 1.3e-28 98.7 0.0 1.0 1 0 0 1 1 1 1 SWIB/MDM2 domain EamA PF00892.20 AHV92758.1 - 3.4e-41 140.6 36.5 1.3e-24 87.0 12.8 2.0 2 0 0 2 2 2 2 EamA-like transporter family DUF4293 PF14126.6 AHV92758.1 - 0.17 12.1 3.8 0.84 9.9 1.3 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4293) FMN_bind_2 PF04299.12 AHV92759.1 - 1.1e-60 204.2 0.0 1.3e-60 203.9 0.0 1.1 1 0 0 1 1 1 1 Putative FMN-binding domain HH_signal PF01085.18 AHV92759.1 - 0.0054 16.4 0.0 0.36 10.5 0.0 2.4 1 1 2 3 3 3 1 Hedgehog amino-terminal signalling domain YAcAr PF10686.9 AHV92759.1 - 0.085 12.8 0.0 0.26 11.3 0.0 1.8 1 0 0 1 1 1 0 YspA, cpYpsA-related SLOG family DDE_Tnp_ISL3 PF01610.17 AHV92760.1 - 7.9e-65 218.9 1.2 1.1e-64 218.4 0.3 1.6 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV92760.1 - 1.4e-11 43.6 0.1 3.6e-11 42.3 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV92760.1 - 5.3e-09 36.6 11.2 1.1e-08 35.6 11.2 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV92760.1 - 0.0056 16.7 0.2 0.016 15.3 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain SLT_L PF14718.6 AHV92760.1 - 0.016 15.3 1.5 0.016 15.3 1.5 1.8 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain NOB1_Zn_bind PF08772.11 AHV92760.1 - 0.017 15.2 0.2 1.2 9.3 0.0 2.5 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-IS66 PF13005.7 AHV92760.1 - 8.2 6.9 9.6 3.6 8.1 6.6 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 DUF2796 PF10986.8 AHV92761.1 - 0.0052 16.8 0.2 0.0073 16.3 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2796) DLH PF01738.18 AHV92762.1 - 8.4e-63 211.8 0.7 9.7e-63 211.6 0.7 1.0 1 0 0 1 1 1 1 Dienelactone hydrolase family BAAT_C PF08840.11 AHV92762.1 - 4.8e-07 29.9 0.1 0.0013 18.7 0.0 3.0 2 1 1 3 3 3 2 BAAT / Acyl-CoA thioester hydrolase C terminal Peptidase_S9 PF00326.21 AHV92762.1 - 5.1e-06 26.1 0.6 0.0034 16.9 0.0 2.2 2 0 0 2 2 2 2 Prolyl oligopeptidase family Abhydrolase_1 PF00561.20 AHV92762.1 - 7.1e-05 22.6 0.3 0.018 14.7 0.1 2.5 1 1 1 2 2 2 2 alpha/beta hydrolase fold Peptidase_S15 PF02129.18 AHV92762.1 - 0.02 14.5 0.4 0.026 14.1 0.4 1.3 1 0 0 1 1 1 0 X-Pro dipeptidyl-peptidase (S15 family) DUF4139 PF13598.6 AHV92763.1 - 2.5e-59 200.5 0.0 4.1e-59 199.8 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4139) DUF4140 PF13600.6 AHV92763.1 - 6.2e-21 74.7 3.1 6.2e-21 74.7 3.1 2.9 3 0 0 3 3 3 1 N-terminal domain of unknown function (DUF4140) CdvA PF18822.1 AHV92763.1 - 0.055 13.3 0.9 4.9 7.0 0.1 2.3 2 0 0 2 2 2 0 CdvA-like coiled-coil domain DivIC PF04977.15 AHV92763.1 - 0.12 12.1 3.0 3.1 7.6 0.4 2.5 2 0 0 2 2 2 0 Septum formation initiator DUF11 PF01345.18 AHV92763.1 - 0.29 11.4 4.1 1.9 8.8 0.0 3.4 3 1 0 3 3 3 0 Domain of unknown function DUF11 APG6_N PF17675.1 AHV92763.1 - 5 7.7 8.2 2.6e+02 2.1 8.1 2.3 1 1 0 1 1 1 0 Apg6 coiled-coil region CstA PF02554.14 AHV92764.1 - 7.2e-131 436.5 20.5 7.2e-131 436.5 20.5 2.1 2 0 0 2 2 2 1 Carbon starvation protein CstA CstA_5TM PF13722.6 AHV92764.1 - 3.9e-36 124.0 7.8 3.9e-36 124.0 7.8 3.0 3 0 0 3 3 3 1 5TM C-terminal transporter carbon starvation CstA FbpC_C_terminal PF17845.1 AHV92764.1 - 0.028 14.5 0.1 0.11 12.7 0.1 2.0 1 0 0 1 1 1 0 FbpC C-terminal regulatory nucleotide binding domain Nif11 PF07862.11 AHV92764.1 - 0.1 12.9 0.0 0.2 12.0 0.0 1.5 1 0 0 1 1 1 0 Nif11 domain DUF4083 PF13314.6 AHV92764.1 - 4.3 7.4 6.8 2.3 8.2 0.0 3.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4083) DUF2417 PF10329.9 AHV92764.1 - 6.2 6.2 6.7 0.49 9.8 0.3 2.3 3 0 0 3 3 3 0 Region of unknown function (DUF2417) Baculo_11_kDa PF06143.11 AHV92764.1 - 8.6 6.0 7.7 5.2 6.7 0.0 3.0 3 0 0 3 3 3 0 Baculovirus 11 kDa family LysR_substrate PF03466.20 AHV92766.1 - 8.3e-26 90.7 11.0 1.2e-25 90.1 11.0 1.3 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 AHV92766.1 - 1.2e-19 70.0 0.1 5.3e-19 67.9 0.1 2.2 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family Peripla_BP_3 PF13377.6 AHV92766.1 - 1.8 8.9 6.3 0.25 11.7 1.4 2.0 2 1 0 2 2 2 0 Periplasmic binding protein-like domain BPD_transp_1 PF00528.22 AHV92767.1 - 1.1e-25 90.5 12.6 1.1e-25 90.5 12.6 2.4 2 1 0 2 2 2 2 Binding-protein-dependent transport system inner membrane component DUF543 PF04418.12 AHV92767.1 - 0.29 11.1 0.2 0.29 11.1 0.2 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF543) LysR_substrate PF03466.20 AHV92768.1 - 5.8e-35 120.6 0.6 7.8e-35 120.1 0.6 1.1 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 AHV92768.1 - 3.6e-15 55.7 0.2 6.9e-15 54.8 0.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family FtsK_SpoIIIE PF01580.18 AHV92769.1 - 4.3e-65 219.5 1.0 1.7e-64 217.5 1.0 1.9 1 1 0 1 1 1 1 FtsK/SpoIIIE family FtsK_4TM PF13491.6 AHV92769.1 - 1.2e-47 161.8 18.6 1.7e-47 161.3 18.6 1.3 1 0 0 1 1 1 1 4TM region of DNA translocase FtsK/SpoIIIE FtsK_alpha PF17854.1 AHV92769.1 - 3.7e-29 100.8 0.1 8.6e-29 99.7 0.1 1.7 1 0 0 1 1 1 1 FtsK alpha domain FtsK_gamma PF09397.10 AHV92769.1 - 1.4e-27 95.3 0.1 4e-27 93.8 0.1 1.9 1 0 0 1 1 1 1 Ftsk gamma domain AAA_10 PF12846.7 AHV92769.1 - 5.1e-07 29.0 0.0 0.0031 16.5 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain DUF87 PF01935.17 AHV92769.1 - 0.00034 20.8 0.3 0.00064 19.9 0.3 1.3 1 0 0 1 1 1 1 Helicase HerA, central domain TrwB_AAD_bind PF10412.9 AHV92769.1 - 0.00044 19.3 0.1 0.033 13.1 0.0 2.2 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain T2SSE PF00437.20 AHV92769.1 - 0.0089 15.1 0.1 0.017 14.2 0.1 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein DNA_photolyase PF00875.18 AHV92769.1 - 0.019 15.0 0.0 7.9 6.5 0.0 2.6 2 0 0 2 2 2 0 DNA photolyase TniB PF05621.11 AHV92769.1 - 0.02 14.3 0.1 6.4 6.1 0.0 3.0 3 0 0 3 3 3 0 Bacterial TniB protein AAA_22 PF13401.6 AHV92769.1 - 0.03 14.6 0.3 0.4 11.0 0.3 2.3 1 1 0 1 1 1 0 AAA domain DEAD PF00270.29 AHV92769.1 - 0.032 14.0 0.0 0.085 12.6 0.0 1.6 1 1 0 1 1 1 0 DEAD/DEAH box helicase Cupin_4 PF08007.12 AHV92769.1 - 0.053 13.0 0.0 0.19 11.2 0.0 1.8 2 0 0 2 2 2 0 Cupin superfamily protein AAA_29 PF13555.6 AHV92769.1 - 0.11 12.3 0.1 0.31 10.8 0.1 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain TrmB PF01978.19 AHV92769.1 - 0.12 12.3 0.0 0.31 10.9 0.0 1.7 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DAGK_prokar PF01219.19 AHV92770.1 - 9.9e-33 112.0 4.9 1.1e-32 111.8 4.9 1.0 1 0 0 1 1 1 1 Prokaryotic diacylglycerol kinase LysR_substrate PF03466.20 AHV92771.1 - 9e-38 129.7 5.6 1.1e-37 129.4 5.6 1.1 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 AHV92771.1 - 5.6e-18 64.7 0.1 1.6e-17 63.2 0.1 1.8 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family ABC2_membrane PF01061.24 AHV92772.1 - 5.8e-34 117.4 23.7 9.2e-34 116.7 23.7 1.2 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 AHV92772.1 - 4.6e-07 29.3 21.8 4.6e-07 29.3 21.8 1.5 2 0 0 2 2 2 1 ABC-2 family transporter protein DUF883 PF05957.13 AHV92772.1 - 4.9 7.8 4.4 2.1 9.0 0.2 2.2 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF883) DoxX PF07681.12 AHV92773.1 - 1.5e-16 60.7 8.2 1.5e-16 60.7 8.2 1.8 2 0 0 2 2 2 1 DoxX DoxD PF04173.13 AHV92773.1 - 0.0075 16.2 0.5 0.0075 16.2 0.5 1.5 2 0 0 2 2 2 1 TQO small subunit DoxD DoxX_2 PF13564.6 AHV92773.1 - 0.086 13.0 9.8 0.15 12.2 9.5 1.7 1 1 0 1 1 1 0 DoxX-like family Aldedh PF00171.22 AHV92774.1 - 1.3e-36 126.1 1.1 1.9e-36 125.6 1.1 1.1 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.14 AHV92774.1 - 0.059 12.4 0.2 0.11 11.6 0.2 1.4 1 0 0 1 1 1 0 Acyl-CoA reductase (LuxC) Ribonucleas_3_3 PF14622.6 AHV92775.1 - 1.6e-37 128.5 0.0 2.6e-37 127.8 0.0 1.3 1 0 0 1 1 1 1 Ribonuclease-III-like Ribonuclease_3 PF00636.26 AHV92775.1 - 4e-20 72.4 0.0 7e-20 71.6 0.0 1.4 1 0 0 1 1 1 1 Ribonuclease III domain dsrm PF00035.26 AHV92775.1 - 3e-10 40.7 0.1 4.9e-10 40.0 0.1 1.3 1 0 0 1 1 1 1 Double-stranded RNA binding motif DND1_DSRM PF14709.7 AHV92775.1 - 0.00019 21.6 0.0 0.00036 20.7 0.0 1.4 1 0 0 1 1 1 1 double strand RNA binding domain from DEAD END PROTEIN 1 BKACE PF05853.12 AHV92776.1 - 1.7e-58 198.1 0.5 1.9e-58 197.9 0.5 1.0 1 0 0 1 1 1 1 beta-keto acid cleavage enzyme BPD_transp_2 PF02653.16 AHV92777.1 - 3.7e-24 85.3 25.8 4.8e-24 85.0 25.8 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component DUF4148 PF13663.6 AHV92779.1 - 2e-22 79.1 3.4 1e-10 41.6 0.2 2.0 2 0 0 2 2 2 2 Domain of unknown function (DUF4148) Poly_export PF02563.16 AHV92779.1 - 0.061 13.5 0.2 0.39 11.0 0.2 1.9 1 1 0 1 1 1 0 Polysaccharide biosynthesis/export protein TctC PF03401.14 AHV92780.1 - 4.9e-78 261.9 0.0 5.7e-78 261.7 0.0 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor DUF3458_C PF17432.2 AHV92781.1 - 8.9e-116 386.7 10.2 8.9e-116 386.7 10.2 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF3458_C) ARM repeats Peptidase_M1 PF01433.20 AHV92781.1 - 6e-50 169.8 0.0 1.1e-49 169.0 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M1 domain DUF3458 PF11940.8 AHV92781.1 - 1.3e-22 80.0 0.0 5.3e-22 78.1 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF3458) Ig-like fold Peptidase_M1_N PF17900.1 AHV92781.1 - 1.1e-12 48.5 0.0 1.8e-12 47.8 0.0 1.3 1 0 0 1 1 1 1 Peptidase M1 N-terminal domain FAA_hydro_N_2 PF18288.1 AHV92781.1 - 0.0086 16.5 0.0 0.031 14.7 0.0 1.9 1 0 0 1 1 1 1 Fumarylacetoacetase N-terminal domain 2 LcrR PF09621.10 AHV92781.1 - 0.012 15.1 0.3 1.8 8.0 0.0 2.8 2 1 0 2 2 2 0 Type III secretion system regulator (LcrR) Peptidase_M61 PF05299.12 AHV92781.1 - 0.19 12.1 1.1 0.46 10.9 0.2 2.2 2 1 0 2 2 2 0 M61 glycyl aminopeptidase PfkB PF00294.24 AHV92782.1 - 5.3e-25 88.3 0.5 6.7e-25 88.0 0.5 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 AHV92782.1 - 2.5e-07 30.3 0.0 3.3e-07 29.9 0.0 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase GerE PF00196.19 AHV92783.1 - 7.1e-06 25.5 0.3 1.2e-05 24.7 0.3 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4 PF04545.16 AHV92783.1 - 0.0021 17.5 0.1 0.0021 17.5 0.1 2.0 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_23 PF13384.6 AHV92783.1 - 0.024 14.4 0.3 0.094 12.5 0.0 2.1 2 0 0 2 2 2 0 Homeodomain-like domain GARS_C PF02843.16 AHV92783.1 - 0.039 14.2 0.2 1.5 9.1 0.0 2.6 2 1 0 2 2 2 0 Phosphoribosylglycinamide synthetase, C domain HTH_Tnp_ISL3 PF13542.6 AHV92783.1 - 0.08 12.4 0.1 0.22 10.9 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_28 PF13518.6 AHV92783.1 - 0.087 13.0 0.2 1.2 9.3 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain BPD_transp_1 PF00528.22 AHV92784.1 - 2.7e-42 144.6 11.7 2.7e-42 144.6 11.7 1.8 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component HTH_18 PF12833.7 AHV92785.1 - 6.8e-18 64.7 3.1 1e-17 64.2 0.8 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_AraC PF00165.23 AHV92785.1 - 1.6e-07 31.2 0.0 0.00062 19.8 0.0 2.5 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_29 PF13551.6 AHV92785.1 - 0.023 14.7 0.3 0.34 11.0 0.0 2.7 3 0 0 3 3 3 0 Winged helix-turn helix HTH_31 PF13560.6 AHV92785.1 - 0.028 14.8 3.5 0.41 11.0 0.0 3.4 4 0 0 4 4 4 0 Helix-turn-helix domain UPF0175 PF03683.13 AHV92785.1 - 0.044 13.5 1.0 0.17 11.6 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0175) Sigma70_r3 PF04539.16 AHV92785.1 - 0.18 11.9 0.0 0.39 10.8 0.0 1.5 1 0 0 1 1 1 0 Sigma-70 region 3 Cons_hypoth95 PF03602.15 AHV92786.1 - 3.5e-43 147.4 0.0 4.5e-43 147.0 0.0 1.1 1 0 0 1 1 1 1 Conserved hypothetical protein 95 MTS PF05175.14 AHV92786.1 - 2.1e-10 40.4 0.0 2.9e-10 40.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.6 AHV92786.1 - 1.8e-08 34.4 0.0 1.9e-08 34.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 AHV92786.1 - 9.1e-05 23.1 0.0 0.00016 22.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MethyltransfD12 PF02086.15 AHV92786.1 - 0.0034 17.1 0.0 0.049 13.3 0.0 2.0 1 1 0 2 2 2 1 D12 class N6 adenine-specific DNA methyltransferase UPF0020 PF01170.18 AHV92786.1 - 0.0064 16.2 0.0 0.15 11.7 0.0 2.1 1 1 1 2 2 2 1 Putative RNA methylase family UPF0020 Methyltransf_24 PF13578.6 AHV92786.1 - 0.012 16.7 0.0 0.022 15.8 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain TRM PF02005.16 AHV92786.1 - 0.017 14.3 0.3 0.038 13.2 0.0 1.6 2 0 0 2 2 2 0 N2,N2-dimethylguanosine tRNA methyltransferase PrmA PF06325.13 AHV92786.1 - 0.031 13.7 0.0 0.04 13.3 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) SAM_MT PF04445.13 AHV92786.1 - 0.043 13.2 0.0 0.08 12.3 0.0 1.4 1 0 0 1 1 1 0 Putative SAM-dependent methyltransferase Methyltransf_15 PF09445.10 AHV92786.1 - 0.065 12.8 0.0 0.095 12.3 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltr_RsmB-F PF01189.17 AHV92786.1 - 0.069 12.8 0.0 0.11 12.1 0.0 1.2 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F Methyltrans_SAM PF10672.9 AHV92786.1 - 0.11 11.7 0.0 0.16 11.1 0.0 1.2 1 0 0 1 1 1 0 S-adenosylmethionine-dependent methyltransferase ECH_1 PF00378.20 AHV92787.1 - 9.4e-33 113.6 0.3 1.1e-32 113.3 0.3 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 AHV92787.1 - 2.7e-23 83.0 0.2 3.1e-23 82.8 0.2 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase DLH PF01738.18 AHV92787.1 - 0.0036 16.9 0.4 0.0072 15.9 0.4 1.4 1 1 0 1 1 1 1 Dienelactone hydrolase family Carboxyl_trans PF01039.22 AHV92787.1 - 0.025 13.2 0.0 0.028 13.1 0.0 1.1 1 0 0 1 1 1 0 Carboxyl transferase domain ABC_tran PF00005.27 AHV92788.1 - 4.3e-25 88.8 0.0 6.1e-25 88.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 AHV92788.1 - 8.8e-09 35.6 1.6 0.00029 20.8 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 AHV92788.1 - 1e-08 34.9 0.1 4.7e-08 32.7 0.1 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 AHV92788.1 - 0.00084 19.0 0.1 0.0022 17.7 0.1 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_ATPase PF09818.9 AHV92788.1 - 0.0013 17.7 2.4 0.39 9.5 0.1 2.9 2 1 0 2 2 2 2 Predicted ATPase of the ABC class MMR_HSR1 PF01926.23 AHV92788.1 - 0.0015 18.6 0.0 0.0028 17.7 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase Dynamin_N PF00350.23 AHV92788.1 - 0.004 17.2 0.0 0.0065 16.5 0.0 1.3 1 0 0 1 1 1 1 Dynamin family RsgA_GTPase PF03193.16 AHV92788.1 - 0.0062 16.5 0.0 0.013 15.5 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_27 PF13514.6 AHV92788.1 - 0.011 15.4 0.0 0.018 14.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 AHV92788.1 - 0.021 14.5 0.1 0.053 13.2 0.0 1.6 2 0 0 2 2 2 0 AAA ATPase domain AAA_23 PF13476.6 AHV92788.1 - 0.034 14.6 0.1 0.053 14.0 0.1 1.2 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 AHV92788.1 - 0.075 12.6 0.4 0.29 10.7 0.4 2.1 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 AHV92788.1 - 0.11 12.7 0.3 1.7 9.0 0.3 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit ATPase PF06745.13 AHV92788.1 - 0.12 11.7 0.6 7.7 5.8 0.1 2.2 2 0 0 2 2 2 0 KaiC Zeta_toxin PF06414.12 AHV92788.1 - 0.17 11.2 0.0 0.28 10.4 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin Tim44 PF04280.15 AHV92789.1 - 1.8e-14 54.1 0.0 3e-14 53.4 0.0 1.3 1 0 0 1 1 1 1 Tim44-like domain PEPcase PF00311.17 AHV92790.1 - 1.9e-282 939.1 0.0 2.2e-282 938.9 0.0 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase DUF3040 PF11239.8 AHV92790.1 - 0.068 13.4 6.6 0.49 10.7 0.3 4.0 3 1 1 4 4 4 0 Protein of unknown function (DUF3040) XPC-binding PF09280.11 AHV92790.1 - 0.85 9.4 3.1 3.4 7.5 0.1 3.5 4 0 0 4 4 4 0 XPC-binding domain ABC_tran PF00005.27 AHV92791.1 - 1.8e-33 116.0 0.0 3.6e-33 115.0 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_22 PF13401.6 AHV92791.1 - 5.5e-05 23.4 0.2 0.00023 21.4 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 AHV92791.1 - 0.00011 22.6 0.9 0.00039 20.9 0.2 2.2 1 1 1 2 2 2 1 AAA ATPase domain AAA_21 PF13304.6 AHV92791.1 - 0.00048 20.0 0.8 0.14 12.0 0.1 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 AHV92791.1 - 0.00077 19.2 0.1 0.0017 18.1 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_ATPase PF09818.9 AHV92791.1 - 0.0011 17.9 0.3 0.18 10.6 0.0 2.1 2 0 0 2 2 2 2 Predicted ATPase of the ABC class RsgA_GTPase PF03193.16 AHV92791.1 - 0.0015 18.4 0.1 0.0044 16.9 0.1 1.7 1 1 0 1 1 1 1 RsgA GTPase ATPase_2 PF01637.18 AHV92791.1 - 0.0019 18.1 0.0 0.015 15.2 0.0 2.3 2 1 0 2 2 2 1 ATPase domain predominantly from Archaea CBS PF00571.28 AHV92791.1 - 0.0024 18.3 0.0 0.093 13.2 0.0 2.6 2 0 0 2 2 2 1 CBS domain AAA_33 PF13671.6 AHV92791.1 - 0.007 16.5 0.1 0.091 12.9 0.1 2.6 2 1 0 2 2 2 1 AAA domain AAA_30 PF13604.6 AHV92791.1 - 0.016 14.9 0.0 0.055 13.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain Viral_helicase1 PF01443.18 AHV92791.1 - 0.055 13.2 0.0 0.2 11.4 0.0 1.8 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AAA_23 PF13476.6 AHV92791.1 - 0.074 13.5 0.2 0.15 12.5 0.2 1.4 1 0 0 1 1 1 0 AAA domain SMC_N PF02463.19 AHV92791.1 - 0.08 12.4 0.9 7 6.0 0.1 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain APS_kinase PF01583.20 AHV92791.1 - 0.088 12.7 0.0 0.16 11.8 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_18 PF13238.6 AHV92791.1 - 0.089 13.3 0.0 0.25 11.9 0.0 1.8 1 1 0 2 2 2 0 AAA domain SbcCD_C PF13558.6 AHV92791.1 - 0.15 12.3 0.0 0.45 10.8 0.0 1.9 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_24 PF13479.6 AHV92791.1 - 0.18 11.5 0.0 0.65 9.7 0.0 1.8 2 0 0 2 2 2 0 AAA domain SnoaL PF07366.12 AHV92792.1 - 4.9e-06 26.4 0.1 5.9e-06 26.1 0.1 1.4 1 1 0 1 1 1 1 SnoaL-like polyketide cyclase SnoaL_2 PF12680.7 AHV92792.1 - 5.6e-05 23.7 0.4 7.6e-05 23.3 0.4 1.3 1 0 0 1 1 1 1 SnoaL-like domain BPD_transp_1 PF00528.22 AHV92793.1 - 2.2e-30 105.8 14.2 2.6e-30 105.5 12.5 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 AHV92793.1 - 0.0013 18.7 1.1 0.0013 18.7 1.1 3.3 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C DUF373 PF04123.13 AHV92793.1 - 0.087 12.2 6.8 0.052 13.0 4.8 1.6 1 1 1 2 2 2 0 Domain of unknown function (DUF373) Thioredoxin_2 PF13098.6 AHV92794.1 - 3e-28 98.4 0.0 6.7e-28 97.3 0.0 1.5 2 0 0 2 2 2 1 Thioredoxin-like domain DsbC_N PF10411.9 AHV92794.1 - 2.6e-10 39.6 0.0 4.9e-10 38.7 0.0 1.5 1 0 0 1 1 1 1 Disulfide bond isomerase protein N-terminus DSBA PF01323.20 AHV92794.1 - 9.7e-06 25.5 0.2 0.015 15.1 0.0 2.4 2 0 0 2 2 2 2 DSBA-like thioredoxin domain Thioredoxin_4 PF13462.6 AHV92794.1 - 0.019 15.2 0.0 8.2 6.5 0.0 2.2 2 0 0 2 2 2 0 Thioredoxin Thioredoxin_3 PF13192.6 AHV92794.1 - 0.028 14.5 0.0 6 7.0 0.0 2.5 2 0 0 2 2 2 0 Thioredoxin domain Thioredoxin PF00085.20 AHV92794.1 - 0.074 13.0 0.0 15 5.6 0.0 2.5 2 0 0 2 2 2 0 Thioredoxin Glutaredoxin PF00462.24 AHV92794.1 - 0.077 13.2 0.0 0.28 11.4 0.0 1.9 2 0 0 2 2 2 0 Glutaredoxin DDE_Tnp_ISL3 PF01610.17 AHV92795.1 - 7.9e-65 218.9 1.2 1.1e-64 218.4 0.3 1.6 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV92795.1 - 1.4e-11 43.6 0.1 3.6e-11 42.3 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV92795.1 - 5.3e-09 36.6 11.2 1.1e-08 35.6 11.2 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV92795.1 - 0.0056 16.7 0.2 0.016 15.3 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain SLT_L PF14718.6 AHV92795.1 - 0.016 15.3 1.5 0.016 15.3 1.5 1.8 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain NOB1_Zn_bind PF08772.11 AHV92795.1 - 0.017 15.2 0.2 1.2 9.3 0.0 2.5 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-IS66 PF13005.7 AHV92795.1 - 8.2 6.9 9.6 3.6 8.1 6.6 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 TctC PF03401.14 AHV92796.1 - 2e-79 266.5 0.0 2.5e-79 266.2 0.0 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor SBP_bac_3 PF00497.20 AHV92796.1 - 0.022 14.2 0.0 0.054 12.9 0.0 1.6 2 0 0 2 2 2 0 Bacterial extracellular solute-binding proteins, family 3 MFS_1 PF07690.16 AHV92797.1 - 2.3e-42 145.2 39.0 2.3e-42 145.2 39.0 1.5 2 0 0 2 2 2 1 Major Facilitator Superfamily MFS_4 PF06779.14 AHV92797.1 - 0.042 13.1 34.1 0.56 9.4 34.1 2.0 1 1 0 1 1 1 0 Uncharacterised MFS-type transporter YbfB FecR PF04773.13 AHV92798.1 - 1.3e-19 70.6 1.2 3.6e-19 69.2 0.6 1.9 2 0 0 2 2 2 1 FecR protein DUF4880 PF16220.5 AHV92798.1 - 7.5e-10 38.5 7.4 2.1e-09 37.1 7.4 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF4880) DUF1854 PF08909.11 AHV92799.1 - 4.1e-50 169.0 0.0 4.7e-50 168.8 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1854) Zip PF02535.22 AHV92800.1 - 4.7e-25 88.5 29.0 8e-25 87.8 8.7 2.0 2 0 0 2 2 2 2 ZIP Zinc transporter Ycf66_N PF07444.11 AHV92800.1 - 0.048 13.8 2.5 0.13 12.4 0.0 2.9 2 1 2 4 4 4 0 Ycf66 protein N-terminus BAGE PF08180.11 AHV92800.1 - 0.096 12.8 4.9 0.56 10.3 4.9 2.4 1 0 0 1 1 1 0 B melanoma antigen family Putative_PNPOx PF01243.20 AHV92802.1 - 1.5e-29 102.0 0.0 2.1e-29 101.5 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase PNP_phzG_C PF10590.9 AHV92802.1 - 7.4e-22 77.2 2.1 2.1e-21 75.7 2.1 1.8 1 0 0 1 1 1 1 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region Pyridox_oxase_2 PF12766.7 AHV92802.1 - 2.8e-07 31.1 0.0 4.4e-07 30.4 0.0 1.3 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Fels1 PF05666.11 AHV92803.1 - 1.5e-25 88.5 0.1 1.4e-12 47.0 0.1 2.1 2 0 0 2 2 2 2 Fels-1 Prophage Protein-like LpxB PF02684.15 AHV92804.1 - 3.4e-92 309.2 0.0 4.7e-92 308.7 0.0 1.2 1 0 0 1 1 1 1 Lipid-A-disaccharide synthetase PGM_PMM_I PF02878.16 AHV92805.1 - 7.1e-31 106.8 0.0 8.6e-31 106.5 0.0 1.1 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PaaX_C PF08223.11 AHV92806.1 - 1.9e-29 101.9 0.3 3.5e-29 101.0 0.3 1.5 1 0 0 1 1 1 1 PaaX-like protein C-terminal domain PaaX PF07848.12 AHV92806.1 - 3.8e-29 100.7 0.1 7.1e-29 99.8 0.1 1.5 1 0 0 1 1 1 1 PaaX-like protein Penicillinase_R PF03965.16 AHV92806.1 - 0.086 13.2 0.0 0.14 12.5 0.0 1.3 1 0 0 1 1 1 0 Penicillinase repressor Pyr_redox_2 PF07992.14 AHV92808.1 - 2.1e-54 184.7 2.1 2.1e-54 184.7 2.1 1.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 AHV92808.1 - 1.1e-36 125.4 0.0 3.1e-36 124.0 0.0 1.8 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Biotin_lipoyl PF00364.22 AHV92808.1 - 7.9e-21 73.7 8.2 1.9e-20 72.5 8.2 1.7 1 0 0 1 1 1 1 Biotin-requiring enzyme Pyr_redox PF00070.27 AHV92808.1 - 4.2e-10 40.0 0.4 4.2e-10 40.0 0.4 3.7 4 0 0 4 4 3 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 AHV92808.1 - 1.6e-09 37.7 0.5 2.8e-09 36.9 0.5 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase GIDA PF01134.22 AHV92808.1 - 2.4e-07 30.2 0.6 2.4e-07 30.2 0.6 2.9 3 0 0 3 3 3 1 Glucose inhibited division protein A FAD_binding_2 PF00890.24 AHV92808.1 - 3.6e-05 23.0 1.0 0.00014 21.1 0.5 2.2 2 0 0 2 2 2 1 FAD binding domain FAD_binding_3 PF01494.19 AHV92808.1 - 0.00014 21.2 4.0 0.0023 17.3 0.1 2.5 2 0 0 2 2 2 1 FAD binding domain Thi4 PF01946.17 AHV92808.1 - 0.00033 20.0 0.1 0.00089 18.6 0.1 1.7 1 0 0 1 1 1 1 Thi4 family AlaDh_PNT_C PF01262.21 AHV92808.1 - 0.00044 19.6 7.9 1.4 8.2 0.1 3.4 3 0 0 3 3 3 3 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox_3 PF13738.6 AHV92808.1 - 0.00052 19.4 4.7 0.36 10.0 1.2 3.1 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Biotin_lipoyl_2 PF13533.6 AHV92808.1 - 0.0028 17.4 5.6 0.0071 16.1 1.5 2.7 1 1 1 2 2 2 1 Biotin-lipoyl like NAD_binding_8 PF13450.6 AHV92808.1 - 0.014 15.6 0.7 0.014 15.6 0.7 3.6 4 0 0 4 4 3 0 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 AHV92808.1 - 0.038 12.7 0.1 0.038 12.7 0.1 2.1 3 0 0 3 3 3 0 HI0933-like protein PYNP_C PF07831.13 AHV92808.1 - 0.039 13.6 0.6 3.9 7.2 0.1 3.0 2 0 0 2 2 2 0 Pyrimidine nucleoside phosphorylase C-terminal domain GCV_H PF01597.19 AHV92808.1 - 0.062 13.2 1.7 0.16 11.9 1.7 1.7 1 0 0 1 1 1 0 Glycine cleavage H-protein HlyD_3 PF13437.6 AHV92808.1 - 0.4 11.4 2.6 0.38 11.5 0.3 2.1 2 0 0 2 2 2 0 HlyD family secretion protein RnfC_N PF13375.6 AHV92808.1 - 1.8 8.6 6.8 2.1 8.3 3.4 2.6 2 1 0 2 2 2 0 RnfC Barrel sandwich hybrid domain ABC_tran PF00005.27 AHV92809.1 - 5.7e-25 88.4 0.0 7.3e-25 88.1 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 AHV92809.1 - 5.4e-09 36.3 4.0 1.4e-05 25.1 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 AHV92809.1 - 0.00014 22.3 0.1 0.00022 21.6 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain BCA_ABC_TP_C PF12399.8 AHV92809.1 - 0.00015 21.6 0.1 0.00027 20.8 0.1 1.5 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_29 PF13555.6 AHV92809.1 - 0.00018 21.2 0.2 0.00035 20.3 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 AHV92809.1 - 0.0003 20.3 0.3 0.015 14.8 0.2 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 AHV92809.1 - 0.00076 19.4 0.2 0.0017 18.3 0.1 1.5 2 0 0 2 2 2 1 RsgA GTPase AAA_22 PF13401.6 AHV92809.1 - 0.0012 19.1 0.2 0.0081 16.4 0.2 1.9 1 1 0 1 1 1 1 AAA domain AAA_27 PF13514.6 AHV92809.1 - 0.0015 18.2 0.1 0.0031 17.1 0.1 1.4 1 0 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.23 AHV92809.1 - 0.0022 18.0 0.1 0.0055 16.8 0.1 1.6 2 0 0 2 2 2 1 50S ribosome-binding GTPase Dynamin_N PF00350.23 AHV92809.1 - 0.0038 17.3 0.1 0.0065 16.5 0.1 1.3 1 0 0 1 1 1 1 Dynamin family MobB PF03205.14 AHV92809.1 - 0.0039 17.1 0.0 0.027 14.4 0.0 2.3 3 0 0 3 3 3 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_23 PF13476.6 AHV92809.1 - 0.0059 17.1 0.1 0.0086 16.6 0.1 1.2 1 0 0 1 1 1 1 AAA domain FtsK_SpoIIIE PF01580.18 AHV92809.1 - 0.0065 15.8 0.2 0.011 15.2 0.2 1.3 1 0 0 1 1 1 1 FtsK/SpoIIIE family MeaB PF03308.16 AHV92809.1 - 0.016 14.2 0.3 0.026 13.5 0.3 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_30 PF13604.6 AHV92809.1 - 0.016 14.9 0.6 0.065 12.9 0.4 1.9 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 AHV92809.1 - 0.022 14.3 0.5 0.044 13.4 0.1 1.6 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.6 AHV92809.1 - 0.03 14.0 0.3 0.062 13.0 0.1 1.5 2 0 0 2 2 2 0 AAA ATPase domain SbcCD_C PF13558.6 AHV92809.1 - 0.062 13.5 0.2 0.51 10.6 0.2 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit T2SSE PF00437.20 AHV92809.1 - 0.065 12.3 0.1 0.1 11.6 0.1 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_19 PF13245.6 AHV92809.1 - 0.13 12.6 0.8 0.53 10.6 0.3 2.0 2 0 0 2 2 2 0 AAA domain ABC_ATPase PF09818.9 AHV92809.1 - 0.15 10.8 0.1 0.5 9.1 0.1 1.7 2 0 0 2 2 2 0 Predicted ATPase of the ABC class PIF1 PF05970.14 AHV92809.1 - 0.17 11.0 0.2 0.28 10.3 0.2 1.2 1 0 0 1 1 1 0 PIF1-like helicase ATP_bind_1 PF03029.17 AHV92809.1 - 0.25 11.1 0.2 0.35 10.6 0.2 1.2 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein RecJ_OB PF17768.1 AHV92811.1 - 4e-18 65.6 0.0 5e-18 65.3 0.0 1.1 1 0 0 1 1 1 1 RecJ OB domain DHHA1 PF02272.19 AHV92811.1 - 0.00033 21.1 0.3 0.00047 20.6 0.3 1.2 1 0 0 1 1 1 1 DHHA1 domain DUF2065 PF09838.9 AHV92811.1 - 0.11 12.5 0.1 0.29 11.2 0.1 1.7 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2065) AMP-binding PF00501.28 AHV92812.1 - 1.1e-48 165.9 0.0 1.4e-48 165.5 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme HAD PF12710.7 AHV92813.1 - 7.7e-21 75.3 1.1 1e-20 75.0 0.2 1.6 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 AHV92813.1 - 1.7e-15 57.9 0.3 3.1e-15 57.0 0.3 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase DUF4072 PF13284.6 AHV92813.1 - 2e-14 53.7 6.8 2e-14 53.7 6.8 2.5 3 0 0 3 3 3 1 Domain of unknown function (DUF4072) Hydrolase_3 PF08282.12 AHV92813.1 - 5.6e-09 36.1 0.1 2.5e-07 30.7 0.0 2.8 3 0 0 3 3 3 1 haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.12 AHV92813.1 - 2e-05 24.1 0.0 0.00022 20.7 0.0 2.2 2 1 0 2 2 2 1 Putative Phosphatase DUF3613 PF12266.8 AHV92814.1 - 0.004 16.9 1.4 0.053 13.3 0.1 2.4 1 1 1 2 2 2 2 Protein of unknown function (DUF3613) DUF4148 PF13663.6 AHV92814.1 - 0.64 10.2 7.6 8.1 6.7 3.3 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF4148) IclR PF01614.18 AHV92815.1 - 8.6e-11 41.8 0.0 1.6e-10 40.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 AHV92815.1 - 1.6e-09 37.4 4.1 1.7e-09 37.4 0.0 2.9 3 1 0 3 3 3 1 IclR helix-turn-helix domain HTH_23 PF13384.6 AHV92815.1 - 0.0032 17.2 0.0 0.011 15.5 0.0 2.0 1 0 0 1 1 1 1 Homeodomain-like domain HTH_36 PF13730.6 AHV92815.1 - 0.0035 17.3 0.0 0.0092 15.9 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 AHV92815.1 - 0.0047 16.4 0.0 0.012 15.1 0.0 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 AHV92815.1 - 0.0051 16.7 0.0 0.012 15.4 0.0 1.6 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 AHV92815.1 - 0.0057 16.6 0.0 0.012 15.5 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.7 AHV92815.1 - 0.0069 16.4 0.0 0.052 13.6 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 AHV92815.1 - 0.016 15.1 0.1 0.1 12.5 0.0 2.4 2 0 0 2 2 2 0 MarR family HTH_22 PF13309.6 AHV92815.1 - 0.022 14.8 0.1 0.077 13.1 0.1 1.9 2 0 0 2 2 2 0 HTH domain Dimerisation2 PF16864.5 AHV92815.1 - 0.032 14.2 0.0 0.1 12.6 0.0 1.8 2 0 0 2 2 2 0 Dimerisation domain HTH_7 PF02796.15 AHV92815.1 - 0.09 12.9 0.0 1.5 9.0 0.0 2.5 2 1 0 2 2 2 0 Helix-turn-helix domain of resolvase HTH_29 PF13551.6 AHV92815.1 - 0.12 12.5 0.1 0.29 11.2 0.1 1.6 1 0 0 1 1 1 0 Winged helix-turn helix DUF1989 PF09347.10 AHV92815.1 - 0.17 11.5 0.1 3.4 7.3 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1989) Xan_ur_permease PF00860.20 AHV92816.1 - 1.3e-93 313.8 45.4 1.5e-93 313.6 45.4 1.0 1 0 0 1 1 1 1 Permease family DUF1146 PF06612.11 AHV92816.1 - 0.087 12.9 2.2 13 5.9 0.1 3.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1146) ECH_1 PF00378.20 AHV92817.1 - 2.6e-45 154.7 0.1 3.2e-45 154.4 0.1 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 AHV92817.1 - 1.2e-21 77.6 0.1 1.7e-21 77.1 0.1 1.2 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase CHAD PF05235.14 AHV92817.1 - 0.034 14.1 6.0 0.18 11.8 3.5 2.1 2 0 0 2 2 2 0 CHAD domain DDE_Tnp_ISL3 PF01610.17 AHV92819.1 - 7.9e-65 218.9 1.2 1.1e-64 218.4 0.3 1.6 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV92819.1 - 1.4e-11 43.6 0.1 3.6e-11 42.3 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV92819.1 - 5.3e-09 36.6 11.2 1.1e-08 35.6 11.2 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV92819.1 - 0.0056 16.7 0.2 0.016 15.3 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain SLT_L PF14718.6 AHV92819.1 - 0.016 15.3 1.5 0.016 15.3 1.5 1.8 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain NOB1_Zn_bind PF08772.11 AHV92819.1 - 0.017 15.2 0.2 1.2 9.3 0.0 2.5 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-IS66 PF13005.7 AHV92819.1 - 8.2 6.9 9.6 3.6 8.1 6.6 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 LptD PF04453.14 AHV92820.1 - 2.4e-97 326.6 24.4 3.9e-97 325.9 24.4 1.2 1 0 0 1 1 1 1 LPS transport system D OstA PF03968.14 AHV92820.1 - 0.0086 16.3 0.0 0.17 12.1 0.0 2.3 1 1 1 2 2 2 1 OstA-like protein Trp_syntA PF00290.20 AHV92821.1 - 1.2e-81 273.4 0.8 1.5e-81 273.1 0.8 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain PcrB PF01884.17 AHV92821.1 - 2.3e-05 24.0 0.1 4e-05 23.2 0.1 1.4 1 0 0 1 1 1 1 PcrB family His_biosynth PF00977.21 AHV92821.1 - 0.00085 18.8 0.1 0.0014 18.1 0.1 1.3 1 0 0 1 1 1 1 Histidine biosynthesis protein DDE_Tnp_ISL3 PF01610.17 AHV92822.1 - 1.1e-64 218.4 1.3 1.5e-64 218.0 0.3 1.6 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV92822.1 - 1.4e-11 43.6 0.1 3.6e-11 42.3 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV92822.1 - 5.4e-09 36.6 11.2 1.1e-08 35.6 11.2 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV92822.1 - 0.0056 16.7 0.2 0.016 15.3 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain SLT_L PF14718.6 AHV92822.1 - 0.015 15.4 1.2 0.015 15.4 1.2 1.8 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain NOB1_Zn_bind PF08772.11 AHV92822.1 - 0.017 15.2 0.2 1.2 9.3 0.0 2.5 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-IS66 PF13005.7 AHV92822.1 - 8.2 6.9 9.6 3.6 8.1 6.6 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 DUF423 PF04241.15 AHV92823.1 - 2.8e-14 53.1 0.1 4.5e-14 52.4 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF423) MGS PF02142.22 AHV92824.1 - 0.00035 20.7 0.0 0.0019 18.4 0.0 2.1 2 1 0 2 2 2 1 MGS-like domain Bac_luciferase PF00296.20 AHV92825.1 - 1.2e-36 126.8 3.4 2.1e-36 125.9 3.4 1.4 1 1 0 1 1 1 1 Luciferase-like monooxygenase rve_3 PF13683.6 AHV92826.1 - 1.8e-31 107.7 0.0 4.1e-31 106.6 0.0 1.6 1 0 0 1 1 1 1 Integrase core domain rve PF00665.26 AHV92826.1 - 3.3e-23 82.1 0.0 5.6e-23 81.4 0.0 1.3 1 0 0 1 1 1 1 Integrase core domain rve_2 PF13333.6 AHV92826.1 - 6.9e-07 29.4 0.0 1.2e-06 28.6 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AHV92826.1 - 0.00061 20.0 0.0 0.00093 19.4 0.0 1.4 1 0 0 1 1 1 1 DDE domain FAD_binding_7 PF03441.14 AHV92827.1 - 2.8e-74 249.0 0.6 3.9e-74 248.5 0.6 1.2 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase DNA_photolyase PF00875.18 AHV92827.1 - 4e-41 140.8 0.2 8.5e-41 139.7 0.2 1.5 1 0 0 1 1 1 1 DNA photolyase FCD PF07729.12 AHV92829.1 - 1.1e-22 80.7 10.4 1.9e-22 80.0 10.4 1.4 1 0 0 1 1 1 1 FCD domain GntR PF00392.21 AHV92829.1 - 1.4e-17 63.1 2.3 1.6e-17 62.9 0.7 1.9 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_11 PF08279.12 AHV92829.1 - 0.0073 16.2 0.1 0.015 15.2 0.1 1.6 1 0 0 1 1 1 1 HTH domain Trans_reg_C PF00486.28 AHV92829.1 - 0.04 14.0 1.1 0.16 12.1 0.2 2.1 2 0 0 2 2 2 0 Transcriptional regulatory protein, C terminal Nif11 PF07862.11 AHV92830.1 - 0.028 14.7 0.1 0.28 11.5 0.0 2.1 1 1 1 2 2 2 0 Nif11 domain DctM PF06808.12 AHV92831.1 - 2.1e-108 362.9 47.6 2.5e-108 362.6 47.6 1.0 1 0 0 1 1 1 1 Tripartite ATP-independent periplasmic transporter, DctM component CitMHS PF03600.16 AHV92831.1 - 0.0096 15.1 63.2 0.13 11.5 30.9 2.1 1 1 1 2 2 2 2 Citrate transporter PAS_4 PF08448.10 AHV92832.1 - 0.017 15.4 0.2 0.12 12.6 0.0 2.1 2 0 0 2 2 2 0 PAS fold MFS_1 PF07690.16 AHV92833.1 - 2.1e-08 33.5 27.6 2.6e-08 33.2 27.6 1.1 1 0 0 1 1 1 1 Major Facilitator Superfamily E1-E2_ATPase PF00122.20 AHV92834.1 - 6.2e-49 166.0 4.4 6.2e-49 166.0 4.4 3.5 5 0 0 5 5 5 1 E1-E2 ATPase Cation_ATPase_C PF00689.21 AHV92834.1 - 1.1e-41 142.6 6.2 1.1e-41 142.6 6.2 2.5 2 0 0 2 2 2 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.26 AHV92834.1 - 1.2e-19 71.4 8.3 2.9e-18 66.9 8.3 2.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase PF13246.6 AHV92834.1 - 7.3e-19 67.6 0.0 1.6e-18 66.6 0.0 1.6 1 0 0 1 1 1 1 Cation transport ATPase (P-type) Cation_ATPase_N PF00690.26 AHV92834.1 - 3.3e-18 65.1 0.0 5.9e-18 64.3 0.0 1.5 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Hydrolase_3 PF08282.12 AHV92834.1 - 6e-07 29.5 2.7 0.0001 22.1 1.8 2.2 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 AHV92834.1 - 1.5e-05 25.5 0.0 3.8e-05 24.2 0.0 1.7 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Glyco_trans_1_4 PF13692.6 AHV92834.1 - 0.2 12.1 1.6 0.59 10.6 0.9 2.3 1 1 0 1 1 1 0 Glycosyl transferases group 1 DUF1974 PF09317.11 AHV92835.1 - 6.9e-05 22.6 0.2 7.8e-05 22.4 0.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1974) LamB_YcsF PF03746.16 AHV92836.1 - 8.2e-104 346.5 2.3 9.2e-104 346.3 2.3 1.0 1 0 0 1 1 1 1 LamB/YcsF family Transglut_core PF01841.19 AHV92837.1 - 7.7e-26 90.8 0.4 1.3e-25 90.0 0.4 1.4 1 0 0 1 1 1 1 Transglutaminase-like superfamily Bact_transglu_N PF08379.10 AHV92837.1 - 1.7e-20 73.7 1.5 3.5e-20 72.7 1.5 1.5 1 0 0 1 1 1 1 Bacterial transglutaminase-like N-terminal region DUF553 PF04473.12 AHV92837.1 - 0.033 13.7 0.0 0.049 13.1 0.0 1.2 1 0 0 1 1 1 0 Transglutaminase-like domain Acetyltransf_2 PF00797.17 AHV92837.1 - 0.19 11.5 0.2 0.37 10.5 0.2 1.4 1 0 0 1 1 1 0 N-acetyltransferase Transglut_core3 PF13471.6 AHV92837.1 - 0.21 11.5 3.8 0.38 10.7 2.2 2.1 1 1 1 2 2 2 0 Transglutaminase-like superfamily CPSase_L_D2 PF02786.17 AHV92838.1 - 4.2e-65 219.2 0.0 6e-65 218.7 0.0 1.2 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_4 PF13535.6 AHV92838.1 - 4e-05 23.3 0.1 0.00027 20.6 0.0 2.3 2 1 0 2 2 2 1 ATP-grasp domain Ala_racemase_N PF01168.20 AHV92839.1 - 2.1e-11 43.9 0.4 2.4e-11 43.7 0.4 1.0 1 0 0 1 1 1 1 Alanine racemase, N-terminal domain DUF4515 PF14988.6 AHV92839.1 - 0.12 12.2 0.1 0.21 11.4 0.1 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4515) Aminotran_1_2 PF00155.21 AHV92840.1 - 1e-54 186.1 0.0 1.2e-54 185.9 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 AHV92840.1 - 0.00021 20.0 0.0 0.00037 19.2 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Met_gamma_lyase PF06838.11 AHV92840.1 - 0.024 13.2 0.1 2.6 6.4 0.0 2.2 2 0 0 2 2 2 0 Methionine gamma-lyase Aminotran_5 PF00266.19 AHV92840.1 - 0.027 13.4 0.0 0.043 12.8 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class-V OKR_DC_1 PF01276.20 AHV92840.1 - 0.059 12.1 0.0 0.085 11.6 0.0 1.3 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain DDE_Tnp_ISL3 PF01610.17 AHV92841.1 - 7.9e-65 218.9 1.2 1.1e-64 218.4 0.3 1.6 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV92841.1 - 1.4e-11 43.6 0.1 3.6e-11 42.3 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV92841.1 - 5.3e-09 36.6 11.2 1.1e-08 35.6 11.2 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV92841.1 - 0.0056 16.7 0.2 0.016 15.3 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain SLT_L PF14718.6 AHV92841.1 - 0.016 15.3 1.5 0.016 15.3 1.5 1.8 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain NOB1_Zn_bind PF08772.11 AHV92841.1 - 0.017 15.2 0.2 1.2 9.3 0.0 2.5 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-IS66 PF13005.7 AHV92841.1 - 8.2 6.9 9.6 3.6 8.1 6.6 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 UPF0227 PF05728.12 AHV92843.1 - 2e-51 174.6 0.0 2.3e-51 174.4 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0227) Abhydrolase_6 PF12697.7 AHV92843.1 - 2.2e-08 35.0 2.1 2.1e-06 28.5 0.3 2.0 1 1 1 2 2 2 2 Alpha/beta hydrolase family FSH1 PF03959.13 AHV92843.1 - 0.06 13.0 0.0 0.074 12.7 0.0 1.3 1 0 0 1 1 1 0 Serine hydrolase (FSH1) Hydrolase_4 PF12146.8 AHV92843.1 - 0.066 12.5 0.0 0.2 10.9 0.0 1.6 1 1 1 2 2 2 0 Serine aminopeptidase, S33 Acyl-CoA_dh_1 PF00441.24 AHV92844.1 - 6.9e-44 149.7 8.2 1.2e-43 148.8 8.2 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_2 PF08028.11 AHV92844.1 - 2.9e-23 82.6 10.3 2.9e-23 82.6 10.3 1.8 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 AHV92844.1 - 1.1e-20 73.6 0.0 2.6e-20 72.4 0.0 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_N PF02771.16 AHV92844.1 - 6.9e-12 46.0 0.1 2.4e-11 44.3 0.1 2.0 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Bac_DNA_binding PF00216.21 AHV92847.1 - 5.1e-15 55.5 0.4 5.1e-15 55.5 0.4 2.0 2 0 0 2 2 2 1 Bacterial DNA-binding protein Alpha_adaptin_C PF02296.16 AHV92847.1 - 0.088 13.0 0.0 0.14 12.4 0.0 1.3 1 0 0 1 1 1 0 Alpha adaptin AP2, C-terminal domain SnoaL_4 PF13577.6 AHV92847.1 - 0.13 12.4 0.0 0.14 12.2 0.0 1.1 1 0 0 1 1 1 0 SnoaL-like domain CMD PF02627.20 AHV92848.1 - 4.5e-12 45.8 0.2 4.5e-12 45.8 0.2 2.0 2 1 0 2 2 2 1 Carboxymuconolactone decarboxylase family Aminotran_1_2 PF00155.21 AHV92849.1 - 1.3e-48 166.0 0.0 1.5e-48 165.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 AHV92849.1 - 0.00031 19.8 0.0 0.0018 17.3 0.0 1.8 2 0 0 2 2 2 1 Aminotransferase class-V Rrf2 PF02082.20 AHV92851.1 - 1.3e-21 76.7 0.0 2.2e-21 76.0 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator HrcA_DNA-bdg PF03444.15 AHV92851.1 - 0.019 14.6 0.0 0.029 14.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding MarR_2 PF12802.7 AHV92851.1 - 0.14 12.1 1.0 0.26 11.2 0.0 2.0 3 0 0 3 3 3 0 MarR family MFS_1 PF07690.16 AHV92852.1 - 9.8e-25 87.2 22.6 1.3e-24 86.8 22.6 1.0 1 0 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.24 AHV92852.1 - 1.6e-06 27.3 9.2 2e-06 26.9 9.2 1.1 1 0 0 1 1 1 1 Sugar (and other) transporter DuoxA PF10204.9 AHV92852.1 - 0.12 11.4 1.4 0.21 10.5 1.4 1.4 1 0 0 1 1 1 0 Dual oxidase maturation factor Sulfatase PF00884.23 AHV92853.1 - 9.9e-09 35.0 0.0 1.3e-08 34.6 0.0 1.1 1 0 0 1 1 1 1 Sulfatase DNA_pol_A PF00476.20 AHV92854.1 - 1.6e-149 498.0 0.0 2.1e-149 497.7 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase family A 5_3_exonuc_N PF02739.16 AHV92854.1 - 1.3e-52 177.9 0.0 2.1e-52 177.2 0.0 1.3 1 0 0 1 1 1 1 5'-3' exonuclease, N-terminal resolvase-like domain DNA_pol_A_exo1 PF01612.20 AHV92854.1 - 5.9e-35 120.5 0.0 9e-35 119.9 0.0 1.3 1 0 0 1 1 1 1 3'-5' exonuclease 5_3_exonuc PF01367.20 AHV92854.1 - 9.9e-23 80.6 0.0 3.8e-22 78.7 0.0 2.1 2 0 0 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold HHH_2 PF12826.7 AHV92854.1 - 0.033 14.3 0.0 0.18 12.0 0.0 2.2 2 0 0 2 2 2 0 Helix-hairpin-helix motif HHH_5 PF14520.6 AHV92854.1 - 0.075 13.6 0.1 0.27 11.8 0.0 2.0 2 0 0 2 2 2 0 Helix-hairpin-helix domain ABC_tran PF00005.27 AHV92855.1 - 2.9e-11 44.0 0.0 1e-10 42.3 0.0 1.8 1 1 0 1 1 1 1 ABC transporter AAA_29 PF13555.6 AHV92855.1 - 0.00034 20.3 0.0 0.00061 19.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain FtsK_SpoIIIE PF01580.18 AHV92855.1 - 0.0027 17.1 0.1 0.0056 16.1 0.0 1.5 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_21 PF13304.6 AHV92855.1 - 0.0039 17.1 0.0 0.0055 16.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 AHV92855.1 - 0.0047 17.5 0.0 0.0066 17.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 AHV92855.1 - 0.0076 15.7 0.1 0.039 13.4 0.1 1.9 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain HTH_29 PF13551.6 AHV92855.1 - 0.012 15.6 0.0 0.034 14.1 0.0 1.7 2 0 0 2 2 1 0 Winged helix-turn helix AAA_28 PF13521.6 AHV92855.1 - 0.017 15.3 0.0 0.029 14.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 AHV92855.1 - 0.019 15.3 0.0 0.063 13.5 0.0 1.9 1 1 1 2 2 2 0 AAA domain AAA_16 PF13191.6 AHV92855.1 - 0.024 15.1 0.0 0.039 14.3 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain 3HCDH_N PF02737.18 AHV92855.1 - 0.028 14.3 0.0 0.051 13.5 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain MeaB PF03308.16 AHV92855.1 - 0.029 13.4 0.1 0.059 12.3 0.1 1.5 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_30 PF13604.6 AHV92855.1 - 0.037 13.7 0.0 0.22 11.2 0.0 2.0 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 AHV92855.1 - 0.045 13.7 0.0 0.076 12.9 0.0 1.5 2 0 0 2 2 1 0 NACHT domain AAA_18 PF13238.6 AHV92855.1 - 0.063 13.8 0.0 0.11 13.1 0.0 1.6 1 1 0 1 1 1 0 AAA domain G-alpha PF00503.20 AHV92855.1 - 0.073 12.2 0.0 0.096 11.8 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit DLIC PF05783.11 AHV92855.1 - 0.13 11.1 0.0 0.19 10.5 0.0 1.2 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) IstB_IS21 PF01695.17 AHV92855.1 - 0.16 11.7 0.0 0.84 9.3 0.0 1.9 2 0 0 2 2 2 0 IstB-like ATP binding protein RsgA_GTPase PF03193.16 AHV92855.1 - 0.17 11.8 0.0 0.26 11.2 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase DUF3584 PF12128.8 AHV92855.1 - 0.19 9.2 0.0 0.33 8.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DUF498 PF04430.14 AHV92856.1 - 2.2e-32 111.4 0.0 2.8e-32 111.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF498/DUF598) LolA PF03548.15 AHV92857.1 - 3.7e-47 160.1 0.1 4.3e-47 159.9 0.1 1.0 1 0 0 1 1 1 1 Outer membrane lipoprotein carrier protein LolA DUF2092 PF09865.9 AHV92857.1 - 0.0034 16.8 0.2 0.62 9.4 0.1 2.1 2 0 0 2 2 2 2 Predicted periplasmic protein (DUF2092) GT87 PF09594.10 AHV92857.1 - 0.025 14.3 2.4 0.037 13.7 2.4 1.2 1 0 0 1 1 1 0 Glycosyltransferase family 87 DDE_Tnp_ISL3 PF01610.17 AHV92858.1 - 7.9e-65 218.9 1.2 1.1e-64 218.4 0.3 1.6 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV92858.1 - 1.4e-11 43.6 0.1 3.6e-11 42.3 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV92858.1 - 5.3e-09 36.6 11.2 1.1e-08 35.6 11.2 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV92858.1 - 0.0056 16.7 0.2 0.016 15.3 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain SLT_L PF14718.6 AHV92858.1 - 0.016 15.3 1.5 0.016 15.3 1.5 1.8 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain NOB1_Zn_bind PF08772.11 AHV92858.1 - 0.017 15.2 0.2 1.2 9.3 0.0 2.5 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-IS66 PF13005.7 AHV92858.1 - 8.2 6.9 9.6 3.6 8.1 6.6 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Abhydrolase_1 PF00561.20 AHV92859.1 - 2.2e-22 80.0 0.0 2.8e-21 76.3 0.0 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 AHV92859.1 - 8.3e-15 56.0 11.0 1e-14 55.7 11.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 AHV92859.1 - 6.7e-08 32.1 0.4 9.2e-08 31.6 0.4 1.2 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Esterase PF00756.20 AHV92859.1 - 0.12 12.0 0.3 0.22 11.1 0.3 1.4 1 0 0 1 1 1 0 Putative esterase Ndr PF03096.14 AHV92859.1 - 0.15 10.7 0.0 0.91 8.2 0.0 1.9 1 1 0 1 1 1 0 Ndr family Phenol_Hydrox PF02332.18 AHV92860.1 - 1.5e-59 201.4 0.3 1.8e-59 201.1 0.3 1.1 1 0 0 1 1 1 1 Methane/Phenol/Toluene Hydroxylase GCV_T PF01571.21 AHV92861.1 - 1.4e-05 24.6 0.0 1.9e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain OstA PF03968.14 AHV92862.1 - 7.4e-25 87.4 0.0 9.5e-25 87.0 0.0 1.1 1 0 0 1 1 1 1 OstA-like protein Gp_dh_C PF02800.20 AHV92863.1 - 3e-64 215.4 0.2 4e-64 215.0 0.2 1.2 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Gp_dh_N PF00044.24 AHV92863.1 - 3.4e-39 133.3 0.1 9.9e-39 131.8 0.1 1.8 2 0 0 2 2 2 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NAD_binding_3 PF03447.16 AHV92863.1 - 0.077 13.7 0.0 0.3 11.7 0.0 2.0 1 1 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain SHD1 PF03983.12 AHV92863.1 - 0.13 12.1 0.0 4.5 7.2 0.0 2.5 2 0 0 2 2 2 0 SLA1 homology domain 1, SHD1 TonB_dep_Rec PF00593.24 AHV92864.1 - 1.4e-50 173.6 13.3 1.6e-50 173.4 13.3 1.0 1 0 0 1 1 1 1 TonB dependent receptor DUF2860 PF11059.8 AHV92864.1 - 0.0012 18.2 0.1 0.0074 15.6 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF2860) DUF5012 PF16404.5 AHV92864.1 - 0.1 12.7 0.3 0.32 11.1 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF5012) OMP_b-brl PF13505.6 AHV92864.1 - 0.89 9.7 9.8 6.3 6.9 6.1 2.8 1 1 1 2 2 2 0 Outer membrane protein beta-barrel domain COX15-CtaA PF02628.15 AHV92865.1 - 1.7e-78 264.0 28.1 2e-78 263.7 28.1 1.0 1 0 0 1 1 1 1 Cytochrome oxidase assembly protein DUF3017 PF11222.8 AHV92866.1 - 1.1 9.5 4.8 2.9 8.2 0.4 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3017) TM_PBP2_N PF16296.5 AHV92867.1 - 0.052 13.7 0.0 0.27 11.4 0.0 1.8 1 1 1 2 2 2 0 N-terminal of TM subunit in PBP-dependent ABC transporters DUF4131 PF13567.6 AHV92868.1 - 0.22 11.2 5.2 0.46 10.1 4.4 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) CopD PF05425.13 AHV92868.1 - 0.33 11.4 7.3 0.92 9.9 7.3 1.7 1 1 0 1 1 1 0 Copper resistance protein D Trp_oprn_chp PF09534.10 AHV92868.1 - 0.43 10.3 7.9 0.16 11.7 1.2 2.3 1 1 1 2 2 2 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) tRNA-synt_2d PF01409.20 AHV92869.1 - 6.6e-92 307.4 0.0 8e-92 307.1 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) Phe_tRNA-synt_N PF02912.18 AHV92869.1 - 9.3e-19 67.1 6.7 1.7e-18 66.3 6.7 1.4 1 0 0 1 1 1 1 Aminoacyl tRNA synthetase class II, N-terminal domain tRNA_synthFbeta PF17759.1 AHV92869.1 - 0.033 13.6 0.0 0.11 12.0 0.0 1.8 3 0 0 3 3 3 0 Phenylalanyl tRNA synthetase beta chain CLM domain Radical_SAM PF04055.21 AHV92870.1 - 1.3e-28 100.5 0.0 1.4e-27 97.1 0.0 2.0 2 1 0 2 2 2 1 Radical SAM superfamily UPF0004 PF00919.20 AHV92870.1 - 2.2e-13 50.1 0.1 3.5e-13 49.4 0.1 1.3 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 CLP1_P PF16575.5 AHV92870.1 - 0.009 15.8 0.0 0.015 15.1 0.0 1.3 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop rve PF00665.26 AHV92871.1 - 7e-21 74.6 0.3 2.3e-20 73.0 0.0 1.7 2 0 0 2 2 2 1 Integrase core domain rve_3 PF13683.6 AHV92871.1 - 9.8e-20 70.1 2.7 1.4e-19 69.6 2.7 1.2 1 0 0 1 1 1 1 Integrase core domain PG_binding_2 PF08823.11 AHV92871.1 - 0.019 15.3 0.0 0.027 14.8 0.0 1.3 1 0 0 1 1 1 0 Putative peptidoglycan binding domain DDE_Tnp_1_2 PF13586.6 AHV92871.1 - 0.093 13.1 0.4 0.22 11.9 0.1 1.8 1 1 1 2 2 2 0 Transposase DDE domain Thiolase_N PF00108.23 AHV92872.1 - 2e-52 178.2 1.0 2e-52 178.2 1.0 1.6 2 0 0 2 2 2 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 AHV92872.1 - 3.4e-46 155.9 0.4 5.3e-46 155.3 0.4 1.3 1 0 0 1 1 1 1 Thiolase, C-terminal domain FecR PF04773.13 AHV92873.1 - 1.3e-16 61.0 0.5 2.3e-16 60.2 0.5 1.5 1 0 0 1 1 1 1 FecR protein LysM PF01476.20 AHV92873.1 - 0.00012 22.0 0.0 0.00023 21.1 0.0 1.5 1 0 0 1 1 1 1 LysM domain BPD_transp_2 PF02653.16 AHV92874.1 - 1.1e-32 113.3 37.0 1.3e-32 113.1 37.0 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component ABC_tran PF00005.27 AHV92875.1 - 9.2e-29 100.7 0.0 1.3e-28 100.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 AHV92875.1 - 8.7e-21 74.2 1.4 6e-20 71.5 0.6 2.3 2 0 0 2 2 2 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 AHV92875.1 - 6e-06 26.3 0.0 0.0035 17.2 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 AHV92875.1 - 0.0021 18.5 0.1 0.0031 17.9 0.1 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 AHV92875.1 - 0.0054 17.0 0.2 0.022 15.1 0.2 1.9 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 AHV92875.1 - 0.025 14.5 0.1 0.041 13.8 0.1 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_29 PF13555.6 AHV92875.1 - 0.13 12.0 0.1 0.24 11.1 0.1 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_25 PF13481.6 AHV92875.1 - 0.14 11.7 0.1 1.1 8.8 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 AHV92875.1 - 0.23 11.2 1.5 0.5 10.0 0.4 2.1 2 1 0 2 2 2 0 AAA domain TonB_dep_Rec PF00593.24 AHV92876.1 - 2.1e-45 156.5 37.0 7.2e-44 151.4 32.6 2.3 1 1 1 2 2 2 2 TonB dependent receptor Plug PF07715.15 AHV92876.1 - 8.7e-12 45.6 1.9 8.7e-12 45.6 1.9 2.1 2 0 0 2 2 2 1 TonB-dependent Receptor Plug Domain STN PF07660.14 AHV92876.1 - 6.9e-07 29.0 0.0 2.1e-06 27.4 0.0 1.9 1 0 0 1 1 1 1 Secretin and TonB N terminus short domain Phosphonate-bd PF12974.7 AHV92877.1 - 3.3e-55 187.3 0.0 5.2e-55 186.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1 PF09084.11 AHV92877.1 - 2.8e-05 24.2 0.0 4.3e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 NMT1/THI5 like SBP_bac_3 PF00497.20 AHV92877.1 - 0.00093 18.7 0.0 0.0023 17.4 0.0 1.8 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 SBP_bac_11 PF13531.6 AHV92877.1 - 0.0028 17.5 0.1 0.0045 16.8 0.0 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein Sigma54_activat PF00158.26 AHV92878.1 - 6.9e-68 227.6 0.1 1.1e-67 226.9 0.1 1.3 1 0 0 1 1 1 1 Sigma-54 interaction domain Response_reg PF00072.24 AHV92878.1 - 4.3e-25 88.1 0.0 8.2e-25 87.1 0.0 1.5 1 0 0 1 1 1 1 Response regulator receiver domain Sigma54_activ_2 PF14532.6 AHV92878.1 - 1e-24 87.2 0.0 4.1e-24 85.3 0.0 1.9 1 1 0 1 1 1 1 Sigma-54 interaction domain HTH_8 PF02954.19 AHV92878.1 - 1.1e-11 44.3 2.5 2.2e-11 43.3 0.9 2.4 2 0 0 2 2 2 1 Bacterial regulatory protein, Fis family AAA_5 PF07728.14 AHV92878.1 - 7.9e-06 25.9 0.0 1.9e-05 24.7 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.21 AHV92878.1 - 0.0031 16.9 0.6 0.66 9.3 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA PF00004.29 AHV92878.1 - 0.0059 17.0 0.0 0.013 15.9 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 AHV92878.1 - 0.0075 16.0 0.0 0.019 14.7 0.0 1.7 1 0 0 1 1 1 1 AAA domain HTH_50 PF18024.1 AHV92878.1 - 0.018 14.6 0.2 0.043 13.4 0.2 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain AAA_16 PF13191.6 AHV92878.1 - 0.021 15.2 0.5 0.075 13.4 0.4 2.0 1 1 0 1 1 1 0 AAA ATPase domain Glycos_transf_N PF04413.16 AHV92878.1 - 0.04 13.6 0.4 4.2 7.0 0.0 3.3 4 0 0 4 4 4 0 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) HsbA PF12296.8 AHV92878.1 - 0.11 12.9 0.1 0.28 11.6 0.1 1.6 1 0 0 1 1 1 0 Hydrophobic surface binding protein A HTH_30 PF13556.6 AHV92878.1 - 0.12 12.2 0.6 0.41 10.5 0.2 2.2 1 1 1 2 2 2 0 PucR C-terminal helix-turn-helix domain ATPase PF06745.13 AHV92878.1 - 0.15 11.4 0.0 0.25 10.6 0.0 1.3 1 0 0 1 1 1 0 KaiC RNase_PH PF01138.21 AHV92879.1 - 9.4e-26 90.9 0.0 3.7e-25 89.0 0.0 2.0 2 0 0 2 2 2 1 3' exoribonuclease family, domain 1 PNPase PF03726.14 AHV92879.1 - 1.5e-18 67.1 0.2 4.1e-18 65.6 0.2 1.8 1 0 0 1 1 1 1 Polyribonucleotide nucleotidyltransferase, RNA binding domain S1 PF00575.23 AHV92879.1 - 8.7e-18 64.4 1.0 2e-17 63.3 1.0 1.7 1 0 0 1 1 1 1 S1 RNA binding domain KH_1 PF00013.29 AHV92879.1 - 1.5e-11 43.9 2.2 4.7e-11 42.3 2.2 1.9 1 0 0 1 1 1 1 KH domain RNase_PH_C PF03725.15 AHV92879.1 - 1.7e-05 24.7 3.4 3.3e-05 23.8 0.3 2.5 2 0 0 2 2 2 1 3' exoribonuclease family, domain 2 KH_2 PF07650.17 AHV92879.1 - 9.1e-05 22.2 0.0 0.00022 21.0 0.0 1.6 1 0 0 1 1 1 1 KH domain KH_4 PF13083.6 AHV92879.1 - 0.0044 16.9 0.4 0.091 12.7 0.0 2.8 2 0 0 2 2 2 1 KH domain TMP-TENI PF02581.17 AHV92879.1 - 0.038 13.3 1.1 0.29 10.4 0.5 2.6 2 0 0 2 2 2 0 Thiamine monophosphate synthase SAM_adeno_trans PF01887.16 AHV92879.1 - 0.065 12.7 1.0 0.27 10.7 0.1 2.1 2 0 0 2 2 2 0 S-adenosyl-l-methionine hydroxide adenosyltransferase RNase_II_C_S1 PF18614.1 AHV92879.1 - 0.095 12.7 1.1 0.94 9.5 0.1 2.8 2 0 0 2 2 2 0 RNase II-type exonuclease C-terminal S1 domain Pyr_redox_2 PF07992.14 AHV92880.1 - 3.8e-63 213.5 0.6 4.4e-63 213.2 0.6 1.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Reductase_C PF14759.6 AHV92880.1 - 1.3e-20 73.8 0.0 1.3e-19 70.5 0.0 2.6 2 0 0 2 2 2 1 Reductase C-terminal Pyr_redox PF00070.27 AHV92880.1 - 1.2e-19 70.7 4.5 1.1e-16 61.1 0.5 3.2 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 AHV92880.1 - 1.3e-06 27.9 0.0 3.3e-05 23.3 0.0 2.1 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.6 AHV92880.1 - 7.5e-06 25.3 0.0 0.087 11.9 0.0 2.1 2 0 0 2 2 2 2 L-lysine 6-monooxygenase (NADPH-requiring) HI0933_like PF03486.14 AHV92880.1 - 8.1e-06 24.8 3.7 0.17 10.5 0.6 3.5 2 2 2 4 4 4 2 HI0933-like protein AlaDh_PNT_C PF01262.21 AHV92880.1 - 4.8e-05 22.8 0.7 4.8e-05 22.8 0.7 1.9 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_9 PF13454.6 AHV92880.1 - 0.0001 22.4 2.2 0.14 12.1 0.1 3.3 3 0 0 3 3 3 2 FAD-NAD(P)-binding DAO PF01266.24 AHV92880.1 - 0.00027 20.7 11.9 0.015 14.9 0.6 3.3 2 2 1 3 3 3 2 FAD dependent oxidoreductase NAD_binding_7 PF13241.6 AHV92880.1 - 0.0019 18.6 1.2 0.87 10.1 0.0 3.1 1 1 1 2 2 2 1 Putative NAD(P)-binding NAD_binding_8 PF13450.6 AHV92880.1 - 0.002 18.3 4.2 0.0037 17.5 0.3 2.8 2 1 0 2 2 2 1 NAD(P)-binding Rossmann-like domain 3HCDH_N PF02737.18 AHV92880.1 - 0.025 14.5 1.4 0.029 14.2 0.1 1.7 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XdhC_C PF13478.6 AHV92880.1 - 0.044 14.3 0.3 2.8 8.5 0.1 2.5 2 0 0 2 2 2 0 XdhC Rossmann domain GIDA PF01134.22 AHV92880.1 - 0.045 12.8 7.3 0.021 13.9 1.4 2.7 3 0 0 3 3 3 0 Glucose inhibited division protein A UDPG_MGDP_dh_N PF03721.14 AHV92880.1 - 0.069 12.7 0.1 0.36 10.4 0.0 2.1 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TrkA_N PF02254.18 AHV92880.1 - 0.071 13.4 0.1 9 6.6 0.0 2.5 2 0 0 2 2 2 0 TrkA-N domain FAD_oxidored PF12831.7 AHV92880.1 - 0.095 12.0 0.6 3 7.1 1.2 2.3 2 0 0 2 2 2 0 FAD dependent oxidoreductase 2-Hacid_dh_C PF02826.19 AHV92880.1 - 0.12 11.7 0.0 0.19 11.1 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Lycopene_cycl PF05834.12 AHV92880.1 - 0.15 11.1 3.3 0.44 9.6 0.1 2.5 2 1 1 3 3 3 0 Lycopene cyclase protein FAD_binding_2 PF00890.24 AHV92880.1 - 7.5 5.5 9.0 0.77 8.8 1.4 2.7 3 0 0 3 3 3 0 FAD binding domain MFS_1 PF07690.16 AHV92881.1 - 5.6e-36 124.2 52.6 9.4e-28 97.1 39.0 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 AHV92881.1 - 6.7e-06 25.2 8.2 6.7e-06 25.2 8.2 2.5 2 1 0 2 2 2 2 Sugar (and other) transporter TRI12 PF06609.13 AHV92881.1 - 0.017 13.6 6.5 0.035 12.5 6.5 1.4 1 0 0 1 1 1 0 Fungal trichothecene efflux pump (TRI12) MtrF PF09472.10 AHV92881.1 - 0.25 10.8 3.5 0.73 9.3 0.8 3.2 3 0 0 3 3 3 0 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) GPI2 PF06432.11 AHV92881.1 - 0.8 9.1 7.5 25 4.2 5.6 2.6 2 1 0 2 2 2 0 Phosphatidylinositol N-acetylglucosaminyltransferase adh_short PF00106.25 AHV92882.1 - 8.3e-42 142.9 0.3 1.9e-41 141.7 0.3 1.5 1 1 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 AHV92882.1 - 1.2e-32 113.3 0.1 1.7e-32 112.9 0.1 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 AHV92882.1 - 7.7e-08 32.5 1.4 5.6e-06 26.4 1.4 2.1 1 1 0 1 1 1 1 KR domain Epimerase PF01370.21 AHV92882.1 - 3.2e-07 30.0 0.3 7.9e-07 28.8 0.3 1.7 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 AHV92882.1 - 0.00011 22.1 0.4 0.00013 21.9 0.4 1.1 1 0 0 1 1 1 1 NAD(P)H-binding RmlD_sub_bind PF04321.17 AHV92882.1 - 0.00043 19.5 0.0 0.00081 18.6 0.0 1.3 1 0 0 1 1 1 1 RmlD substrate binding domain ADH_zinc_N PF00107.26 AHV92882.1 - 0.076 13.0 0.1 0.38 10.7 0.0 2.0 2 0 0 2 2 2 0 Zinc-binding dehydrogenase MFS_3 PF05977.13 AHV92883.1 - 2.5e-32 112.0 34.3 2.9e-32 111.8 34.3 1.0 1 0 0 1 1 1 1 Transmembrane secretion effector MFS_1 PF07690.16 AHV92883.1 - 1.7e-21 76.5 37.8 1.7e-21 76.5 37.8 1.7 1 1 0 1 1 1 1 Major Facilitator Superfamily E1-N PF14463.6 AHV92883.1 - 1.4 8.7 6.5 0.3 10.9 0.8 2.4 2 1 0 2 2 2 0 E1 N-terminal domain adh_short_C2 PF13561.6 AHV92884.1 - 3.4e-12 46.4 0.0 3.8e-12 46.3 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase AdoHcyase_NAD PF00670.21 AHV92884.1 - 0.095 12.8 0.0 0.12 12.4 0.0 1.1 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_binding_2 PF03446.15 AHV92885.1 - 7e-51 172.5 5.9 1e-50 172.0 5.9 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.6 AHV92885.1 - 3.1e-29 101.7 2.3 4.7e-29 101.1 0.0 2.1 2 0 0 2 2 2 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase F420_oxidored PF03807.17 AHV92885.1 - 2.6e-08 34.3 1.7 4.3e-08 33.6 0.8 1.8 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 AHV92885.1 - 2.6e-05 23.7 0.2 3.9e-05 23.1 0.2 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 AHV92885.1 - 0.00023 21.1 0.7 0.00046 20.1 0.7 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 AHV92885.1 - 0.00041 20.0 0.1 0.0032 17.1 0.1 2.0 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain IlvN PF07991.12 AHV92885.1 - 0.0056 16.3 0.3 0.009 15.6 0.3 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain TrkA_N PF02254.18 AHV92885.1 - 0.048 13.9 0.1 0.1 12.8 0.1 1.6 1 0 0 1 1 1 0 TrkA-N domain Sacchrp_dh_NADP PF03435.18 AHV92885.1 - 0.089 13.1 0.2 11 6.3 0.0 2.5 2 1 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain Cecropin PF00272.19 AHV92885.1 - 0.14 11.9 0.1 0.48 10.2 0.1 2.0 1 0 0 1 1 1 0 Cecropin family ApbA PF02558.16 AHV92885.1 - 0.31 10.7 4.4 0.15 11.7 0.7 2.1 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA CSD PF00313.22 AHV92886.1 - 2.3e-24 85.0 0.1 2.5e-24 84.9 0.1 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain OB_RNB PF08206.11 AHV92886.1 - 0.0018 17.9 0.2 0.0024 17.5 0.2 1.2 1 0 0 1 1 1 1 Ribonuclease B OB domain Complex1_49kDa PF00346.19 AHV92887.1 - 1.2e-122 408.2 0.0 1.5e-122 407.9 0.0 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.19 AHV92887.1 - 0.021 13.7 0.1 0.028 13.3 0.1 1.3 1 0 0 1 1 1 0 Nickel-dependent hydrogenase 2-Hacid_dh_C PF02826.19 AHV92888.1 - 1.1e-09 37.9 0.0 1.7e-09 37.3 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.21 AHV92888.1 - 0.059 13.4 0.0 0.098 12.7 0.0 1.3 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ApbA PF02558.16 AHV92888.1 - 0.12 12.0 0.1 0.25 11.0 0.1 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Sdh_cyt PF01127.22 AHV92889.1 - 1.9e-15 56.9 7.6 2.3e-15 56.7 7.6 1.1 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CybS PF05328.12 AHV92889.1 - 0.38 10.4 4.3 0.38 10.4 1.5 2.0 1 1 1 2 2 2 0 CybS, succinate dehydrogenase cytochrome B small subunit Peptidase_U4 PF03419.13 AHV92889.1 - 1.2 8.3 9.1 1.4 8.2 9.1 1.0 1 0 0 1 1 1 0 Sporulation factor SpoIIGA DctM PF06808.12 AHV92892.1 - 3e-102 342.6 39.3 3e-102 342.6 39.3 1.7 2 0 0 2 2 2 1 Tripartite ATP-independent periplasmic transporter, DctM component SlyX PF04102.12 AHV92893.1 - 1.2e-17 64.2 0.3 1.4e-17 64.0 0.3 1.1 1 0 0 1 1 1 1 SlyX TraB PF01963.17 AHV92893.1 - 0.012 15.5 0.4 0.014 15.3 0.4 1.0 1 0 0 1 1 1 0 TraB family CENP-F_leu_zip PF10473.9 AHV92893.1 - 0.11 12.5 2.4 0.12 12.4 2.4 1.0 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 ABC_tran PF00005.27 AHV92894.1 - 4.5e-34 117.9 0.0 6e-34 117.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 AHV92894.1 - 3.9e-12 46.6 0.0 2.9e-05 24.0 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 AHV92894.1 - 2.8e-08 33.5 0.1 1.4e-06 27.9 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 AHV92894.1 - 0.00016 22.1 0.0 0.00028 21.3 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.6 AHV92894.1 - 0.00017 21.8 0.3 0.0014 18.8 0.3 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 AHV92894.1 - 0.00021 21.0 0.0 0.00041 20.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_ATPase PF09818.9 AHV92894.1 - 0.00093 18.1 0.1 0.7 8.6 0.1 2.1 2 0 0 2 2 2 2 Predicted ATPase of the ABC class AAA_15 PF13175.6 AHV92894.1 - 0.0017 18.2 0.1 0.088 12.5 0.1 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 AHV92894.1 - 0.0024 18.4 0.0 0.0042 17.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 AHV92894.1 - 0.0038 17.5 0.3 0.033 14.5 0.3 2.2 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 AHV92894.1 - 0.0061 16.1 0.0 0.0093 15.6 0.0 1.5 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 AHV92894.1 - 0.009 15.9 0.1 0.016 15.1 0.1 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_30 PF13604.6 AHV92894.1 - 0.012 15.3 0.1 0.03 14.0 0.0 1.6 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.6 AHV92894.1 - 0.02 15.1 0.1 0.32 11.2 0.1 2.4 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_24 PF13479.6 AHV92894.1 - 0.024 14.4 0.1 0.051 13.3 0.0 1.6 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 AHV92894.1 - 0.025 14.5 0.0 0.059 13.3 0.0 1.6 1 0 0 1 1 1 0 NACHT domain NTPase_1 PF03266.15 AHV92894.1 - 0.053 13.4 0.3 0.11 12.4 0.1 1.6 2 0 0 2 2 2 0 NTPase IstB_IS21 PF01695.17 AHV92894.1 - 0.068 12.9 0.1 0.83 9.4 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein FtsK_SpoIIIE PF01580.18 AHV92894.1 - 0.082 12.3 0.1 0.15 11.4 0.1 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family NB-ARC PF00931.22 AHV92894.1 - 0.1 11.8 0.1 0.22 10.6 0.1 1.6 1 1 0 1 1 1 0 NB-ARC domain AAA_18 PF13238.6 AHV92894.1 - 0.1 13.1 0.0 0.18 12.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain T2SSE PF00437.20 AHV92894.1 - 0.1 11.6 0.1 0.18 10.9 0.1 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein RNA12 PF10443.9 AHV92894.1 - 0.12 11.0 0.0 0.17 10.6 0.0 1.2 1 0 0 1 1 1 0 RNA12 protein ATPase_2 PF01637.18 AHV92894.1 - 0.14 12.1 0.0 0.25 11.2 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea ATP_bind_1 PF03029.17 AHV92894.1 - 0.14 11.9 0.1 0.54 10.0 0.0 1.8 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein rve_3 PF13683.6 AHV92895.1 - 4e-26 90.6 0.1 4.7e-26 90.3 0.1 1.1 1 0 0 1 1 1 1 Integrase core domain rve_2 PF13333.6 AHV92895.1 - 5.8e-08 32.8 0.0 7.4e-08 32.5 0.0 1.1 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AHV92895.1 - 0.003 17.8 0.0 0.0035 17.6 0.0 1.1 1 0 0 1 1 1 1 DDE domain Laminin_G_3 PF13385.6 AHV92896.1 - 1.2e-07 32.0 0.2 2.1e-06 28.0 0.2 2.1 1 1 0 1 1 1 1 Concanavalin A-like lectin/glucanases superfamily DAO PF01266.24 AHV92897.1 - 7.4e-59 200.1 0.2 9e-59 199.8 0.2 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 AHV92897.1 - 0.0007 18.8 0.0 0.00095 18.4 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain SpecificRecomb PF10136.9 AHV92898.1 - 4.8e-35 121.0 0.0 5.5e-35 120.8 0.0 1.0 1 0 0 1 1 1 1 Site-specific recombinase Amidohydro_2 PF04909.14 AHV92899.1 - 2.7e-42 145.5 7.0 3.1e-42 145.3 7.0 1.0 1 0 0 1 1 1 1 Amidohydrolase XdhC_C PF13478.6 AHV92899.1 - 0.068 13.7 0.3 4.5 7.8 0.1 2.1 2 0 0 2 2 2 0 XdhC Rossmann domain rve_3 PF13683.6 AHV92900.1 - 8.5e-32 108.8 0.1 4.5e-31 106.4 0.0 2.2 2 0 0 2 2 2 1 Integrase core domain rve PF00665.26 AHV92900.1 - 2.5e-24 85.7 0.0 6.4e-23 81.2 0.0 2.2 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 AHV92900.1 - 1.8e-11 44.0 8.6 3.6e-11 43.0 8.6 1.5 1 0 0 1 1 1 1 HTH-like domain rve_2 PF13333.6 AHV92900.1 - 5.7e-07 29.6 0.0 1.3e-06 28.5 0.0 1.6 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AHV92900.1 - 0.00048 20.4 0.0 0.0011 19.3 0.0 1.6 1 1 1 2 2 2 1 DDE domain Rhomboid_SP PF12595.8 AHV92900.1 - 0.0072 15.7 0.3 2 7.7 0.0 2.3 1 1 0 2 2 2 2 Rhomboid serine protease DUF1780 PF08682.10 AHV92900.1 - 0.12 12.0 0.8 1.8 8.2 0.2 2.2 2 0 0 2 2 2 0 Putative endonuclease, protein of unknown function (DUF1780) NAD_binding_1 PF00175.21 AHV92901.1 - 2.6e-14 53.8 0.0 6.8e-14 52.4 0.0 1.7 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain Globin PF00042.22 AHV92901.1 - 3.8e-12 46.7 0.9 5.9e-12 46.1 0.1 1.7 2 0 0 2 2 2 1 Globin FAD_binding_6 PF00970.24 AHV92901.1 - 4.6e-06 26.9 0.0 9.6e-06 25.9 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain Protoglobin PF11563.8 AHV92901.1 - 9.8e-06 25.6 0.2 1.5e-05 24.9 0.2 1.3 1 0 0 1 1 1 1 Protoglobin NAD_binding_6 PF08030.12 AHV92901.1 - 0.0001 22.4 0.0 0.0021 18.2 0.0 2.2 2 0 0 2 2 2 1 Ferric reductase NAD binding domain OB_MalK PF17912.1 AHV92901.1 - 0.16 12.8 0.0 0.54 11.1 0.0 2.0 2 0 0 2 2 2 0 MalK OB fold domain DUF4863 PF16155.5 AHV92902.1 - 1.2e-54 184.3 0.0 1.4e-54 184.1 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4863) ParBc_2 PF08857.11 AHV92903.1 - 1.1e-52 178.5 0.0 2.2e-52 177.5 0.0 1.5 2 0 0 2 2 2 1 Putative ParB-like nuclease K_oxygenase PF13434.6 AHV92904.1 - 7e-20 71.4 0.0 2e-19 69.9 0.0 1.7 2 1 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) Pyr_redox_3 PF13738.6 AHV92904.1 - 1.6e-18 67.0 0.0 1.1e-15 57.7 0.0 2.3 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 AHV92904.1 - 5.7e-13 48.8 0.0 4.4e-12 45.8 0.0 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 AHV92904.1 - 5.3e-10 39.5 2.4 6.1e-10 39.3 0.2 2.2 3 0 0 3 3 2 1 FAD-NAD(P)-binding FAD_binding_2 PF00890.24 AHV92904.1 - 2.1e-08 33.7 8.0 1.3e-05 24.5 0.2 3.1 3 0 0 3 3 3 2 FAD binding domain NAD_binding_8 PF13450.6 AHV92904.1 - 6.1e-08 32.8 1.9 3.9e-06 27.0 0.1 2.7 2 1 0 2 2 2 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 AHV92904.1 - 2.1e-06 27.6 5.1 0.0021 17.7 0.4 3.8 2 2 1 4 4 4 1 FAD dependent oxidoreductase HI0933_like PF03486.14 AHV92904.1 - 2.4e-06 26.5 1.1 0.0066 15.2 0.5 3.1 3 0 0 3 3 3 2 HI0933-like protein FAD_binding_3 PF01494.19 AHV92904.1 - 2.6e-06 27.0 1.9 3.5e-06 26.5 0.1 2.1 2 1 0 2 2 2 1 FAD binding domain AlaDh_PNT_C PF01262.21 AHV92904.1 - 6.9e-06 25.5 1.0 0.01 15.2 0.0 2.3 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox PF00070.27 AHV92904.1 - 1.5e-05 25.5 0.5 0.27 11.8 0.1 2.6 3 0 0 3 3 2 2 Pyridine nucleotide-disulphide oxidoreductase 2-Hacid_dh_C PF02826.19 AHV92904.1 - 0.00089 18.7 0.0 1.4 8.3 0.0 2.2 2 0 0 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Shikimate_DH PF01488.20 AHV92904.1 - 0.0011 19.0 0.2 0.32 11.1 0.0 2.3 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase FMO-like PF00743.19 AHV92904.1 - 0.0017 16.9 0.1 0.68 8.3 0.0 2.6 3 0 0 3 3 3 2 Flavin-binding monooxygenase-like GIDA PF01134.22 AHV92904.1 - 0.0033 16.6 5.0 0.0058 15.8 0.5 2.3 3 0 0 3 3 3 1 Glucose inhibited division protein A Thi4 PF01946.17 AHV92904.1 - 0.016 14.5 0.5 0.29 10.4 0.0 2.3 2 0 0 2 2 2 0 Thi4 family Epimerase PF01370.21 AHV92904.1 - 0.029 13.8 0.0 0.17 11.3 0.0 2.0 1 1 0 1 1 1 0 NAD dependent epimerase/dehydratase family 3HCDH_N PF02737.18 AHV92904.1 - 0.069 13.0 0.6 1.5 8.7 0.0 2.3 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IlvN PF07991.12 AHV92904.1 - 0.084 12.4 0.2 15 5.1 0.1 2.4 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_binding_7 PF13241.6 AHV92904.1 - 0.19 12.2 0.1 2.9 8.4 0.0 2.2 2 0 0 2 2 2 0 Putative NAD(P)-binding Trp_halogenase PF04820.14 AHV92904.1 - 0.48 9.2 1.9 5.4 5.7 0.2 2.3 2 0 0 2 2 2 0 Tryptophan halogenase Lycopene_cycl PF05834.12 AHV92904.1 - 0.49 9.4 4.2 0.24 10.4 0.2 2.2 2 1 1 3 3 3 0 Lycopene cyclase protein FAD_oxidored PF12831.7 AHV92904.1 - 0.56 9.5 4.6 0.22 10.9 0.1 2.1 2 0 0 2 2 2 0 FAD dependent oxidoreductase rve PF00665.26 AHV92905.1 - 2.9e-32 111.3 0.7 4.3e-32 110.8 0.1 1.6 2 0 0 2 2 1 1 Integrase core domain LZ_Tnp_IS481 PF13011.6 AHV92905.1 - 7.7e-22 77.6 2.7 1.1e-19 70.7 0.4 2.6 1 1 1 2 2 2 1 leucine-zipper of insertion element IS481 rve_3 PF13683.6 AHV92905.1 - 5e-19 67.8 2.7 1.2e-18 66.6 2.7 1.7 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.6 AHV92905.1 - 6.1e-17 60.9 4.4 1.2e-07 31.3 0.1 2.7 2 0 0 2 2 2 2 Homeodomain-like domain HTH_28 PF13518.6 AHV92905.1 - 1.5e-15 57.1 6.5 5.9e-11 42.3 0.1 3.4 4 0 0 4 4 3 2 Helix-turn-helix domain HTH_29 PF13551.6 AHV92905.1 - 9.8e-12 44.7 0.6 2.6e-06 27.4 0.0 2.6 2 0 0 2 2 2 2 Winged helix-turn helix HTH_32 PF13565.6 AHV92905.1 - 9.4e-11 42.2 0.7 9.4e-11 42.2 0.7 2.4 2 1 0 2 2 2 1 Homeodomain-like domain HTH_38 PF13936.6 AHV92905.1 - 1.5e-06 27.9 0.6 5.1e-06 26.1 0.5 2.1 2 0 0 2 2 1 1 Helix-turn-helix domain MarR_2 PF12802.7 AHV92905.1 - 8e-06 25.6 3.1 9.5e-05 22.2 1.2 2.6 2 0 0 2 2 2 1 MarR family HTH_31 PF13560.6 AHV92905.1 - 1.4e-05 25.4 1.7 0.00059 20.1 0.4 3.2 3 0 0 3 3 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 AHV92905.1 - 3e-05 23.6 0.1 0.0064 16.1 0.3 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 AHV92905.1 - 4.6e-05 22.9 0.1 0.00056 19.4 0.2 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 YdaS_antitoxin PF15943.5 AHV92905.1 - 0.00022 21.0 0.2 0.24 11.3 0.0 2.8 2 0 0 2 2 2 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_Tnp_ISL3 PF13542.6 AHV92905.1 - 0.00023 20.5 8.5 0.002 17.5 0.6 3.9 4 0 0 4 4 3 1 Helix-turn-helix domain of transposase family ISL3 HTH_24 PF13412.6 AHV92905.1 - 0.00028 20.4 0.2 0.0021 17.6 0.3 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_3 PF01381.22 AHV92905.1 - 0.00032 20.7 0.7 0.013 15.5 0.3 2.5 2 0 0 2 2 2 1 Helix-turn-helix HTH_Crp_2 PF13545.6 AHV92905.1 - 0.0004 20.3 0.3 0.0027 17.6 0.2 2.3 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain Trp_repressor PF01371.19 AHV92905.1 - 0.00081 19.5 0.2 0.006 16.7 0.1 2.2 2 0 0 2 2 2 1 Trp repressor protein CENP-B_N PF04218.13 AHV92905.1 - 0.0016 18.0 0.0 1.6 8.5 0.1 2.3 2 0 0 2 2 2 1 CENP-B N-terminal DNA-binding domain LacI PF00356.21 AHV92905.1 - 0.0017 18.1 1.8 0.0046 16.7 0.7 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family Fe_dep_repress PF01325.19 AHV92905.1 - 0.002 18.3 0.0 0.034 14.4 0.1 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.20 AHV92905.1 - 0.0023 17.8 0.0 0.93 9.4 0.0 2.5 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 AHV92905.1 - 0.0025 17.6 1.3 0.035 13.9 0.7 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_psq PF05225.16 AHV92905.1 - 0.0025 17.5 0.7 2.3 8.0 0.4 2.9 3 0 0 3 3 3 1 helix-turn-helix, Psq domain HTH_11 PF08279.12 AHV92905.1 - 0.0026 17.7 0.4 0.015 15.3 0.5 2.2 2 0 0 2 2 2 1 HTH domain SpoIIID PF12116.8 AHV92905.1 - 0.0026 17.8 0.0 1.1 9.4 0.0 2.4 2 0 0 2 2 2 1 Stage III sporulation protein D HTH_AsnC-type PF13404.6 AHV92905.1 - 0.0036 17.1 2.7 0.045 13.6 1.1 2.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain RepB PF07506.11 AHV92905.1 - 0.0042 17.2 0.1 0.55 10.3 0.1 2.3 1 1 1 2 2 2 1 RepB plasmid partitioning protein HTH_17 PF12728.7 AHV92905.1 - 0.0043 17.2 0.7 6.1 7.1 0.0 3.3 3 1 0 3 3 3 0 Helix-turn-helix domain HTH_Tnp_1 PF01527.20 AHV92905.1 - 0.005 17.1 0.5 0.11 12.8 0.0 2.7 1 1 1 2 2 2 1 Transposase GntR PF00392.21 AHV92905.1 - 0.0053 16.4 0.8 0.5 10.1 0.3 2.5 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_10 PF04967.12 AHV92905.1 - 0.0077 16.0 0.1 0.049 13.4 0.2 2.2 2 0 0 2 2 2 1 HTH DNA binding domain HTH_35 PF13693.6 AHV92905.1 - 0.0093 16.0 1.5 0.073 13.1 0.6 2.7 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding UPF0175 PF03683.13 AHV92905.1 - 0.014 15.1 0.4 0.1 12.3 0.1 2.4 2 1 0 2 2 2 0 Uncharacterised protein family (UPF0175) HTH_30 PF13556.6 AHV92905.1 - 0.015 15.1 0.1 2 8.3 0.0 2.6 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain HTH_37 PF13744.6 AHV92905.1 - 0.016 15.2 0.1 0.13 12.3 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Tnp_4 PF13613.6 AHV92905.1 - 0.016 14.9 0.1 0.067 12.9 0.0 2.0 2 0 0 2 2 1 0 Helix-turn-helix of DDE superfamily endonuclease HTH_36 PF13730.6 AHV92905.1 - 0.02 14.8 0.1 0.58 10.2 0.0 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain KORA PF16509.5 AHV92905.1 - 0.034 14.4 0.1 3.6 8.0 0.0 3.0 3 0 0 3 3 3 0 TrfB plasmid transcriptional repressor MarR PF01047.22 AHV92905.1 - 0.045 13.7 0.1 0.14 12.1 0.1 1.8 2 0 0 2 2 1 0 MarR family DDE_Tnp_IS240 PF13610.6 AHV92905.1 - 0.048 13.9 0.1 0.071 13.3 0.1 1.3 1 0 0 1 1 1 0 DDE domain Crp PF00325.20 AHV92905.1 - 0.05 13.3 3.2 0.062 13.0 0.5 2.5 3 0 0 3 3 3 0 Bacterial regulatory proteins, crp family P22_Cro PF14549.6 AHV92905.1 - 0.051 13.4 1.6 9.6 6.1 0.1 2.5 2 0 0 2 2 2 0 DNA-binding transcriptional regulator Cro DUF746 PF05344.11 AHV92905.1 - 0.085 12.7 0.1 0.98 9.3 0.0 2.3 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) HTH_1 PF00126.27 AHV92905.1 - 0.1 12.5 2.8 4.7 7.2 0.5 2.6 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_26 PF13443.6 AHV92905.1 - 0.17 12.3 0.0 3.6 8.1 0.1 2.8 3 0 0 3 3 3 0 Cro/C1-type HTH DNA-binding domain HTH_8 PF02954.19 AHV92905.1 - 0.19 11.5 0.9 14 5.5 0.7 2.7 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family HTH_Tnp_Tc3_2 PF01498.18 AHV92905.1 - 0.27 11.5 2.6 0.47 10.7 0.1 2.6 3 0 0 3 3 1 0 Transposase HTH_33 PF13592.6 AHV92905.1 - 0.56 9.9 3.1 2.9 7.6 0.1 3.4 4 0 0 4 4 2 0 Winged helix-turn helix MerR PF00376.23 AHV92905.1 - 0.72 9.7 6.8 3.2 7.6 0.0 3.6 4 0 0 4 4 2 0 MerR family regulatory protein SIS PF01380.22 AHV92906.1 - 4.4e-06 26.6 0.0 4.9e-06 26.4 0.0 1.0 1 0 0 1 1 1 1 SIS domain MnmE_helical PF12631.7 AHV92907.1 - 7e-55 186.4 0.3 8.5e-55 186.1 0.3 1.1 1 0 0 1 1 1 1 MnmE helical domain TrmE_N PF10396.9 AHV92907.1 - 1.4e-38 131.8 0.0 1.4e-37 128.5 0.0 2.3 2 0 0 2 2 2 1 GTP-binding protein TrmE N-terminus MMR_HSR1 PF01926.23 AHV92907.1 - 3.3e-24 85.2 0.0 6.8e-24 84.1 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 AHV92907.1 - 3.1e-12 46.3 0.0 6.2e-12 45.3 0.0 1.5 1 1 0 1 1 1 1 Ferrous iron transport protein B Dynamin_N PF00350.23 AHV92907.1 - 6.3e-07 29.6 0.1 0.00056 20.0 0.0 2.3 1 1 1 2 2 2 2 Dynamin family RsgA_GTPase PF03193.16 AHV92907.1 - 3.3e-05 23.9 0.0 0.0015 18.5 0.0 2.3 2 0 0 2 2 2 1 RsgA GTPase Roc PF08477.13 AHV92907.1 - 0.0033 17.6 0.0 0.0093 16.2 0.0 1.8 1 1 0 1 1 1 1 Ras of Complex, Roc, domain of DAPkinase AIG1 PF04548.16 AHV92907.1 - 0.0057 16.0 0.0 0.0088 15.4 0.0 1.2 1 0 0 1 1 1 1 AIG1 family MMR_HSR1_Xtn PF16897.5 AHV92907.1 - 0.0061 16.6 0.0 0.015 15.3 0.0 1.7 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain Ras PF00071.22 AHV92907.1 - 0.0099 15.5 0.0 0.022 14.4 0.0 1.5 2 0 0 2 2 2 1 Ras family Arf PF00025.21 AHV92907.1 - 0.026 14.0 0.1 0.091 12.2 0.1 1.8 1 1 0 1 1 1 0 ADP-ribosylation factor family MCM PF00493.23 AHV92907.1 - 0.028 13.5 0.1 0.3 10.2 0.0 2.1 2 0 0 2 2 2 0 MCM P-loop domain ABC_tran PF00005.27 AHV92907.1 - 0.2 12.2 0.0 0.41 11.2 0.0 1.5 1 0 0 1 1 1 0 ABC transporter AAA_16 PF13191.6 AHV92907.1 - 0.28 11.6 6.3 0.26 11.7 2.2 2.8 2 1 0 2 2 2 0 AAA ATPase domain DUF1485 PF07364.12 AHV92908.1 - 3e-70 236.8 1.6 4.2e-70 236.3 1.6 1.2 1 0 0 1 1 1 1 Metallopeptidase family M81 MlrC_C PF07171.12 AHV92908.1 - 5.8e-51 173.2 0.1 8.3e-51 172.7 0.1 1.2 1 0 0 1 1 1 1 MlrC C-terminus ABC_tran PF00005.27 AHV92909.1 - 1.7e-57 193.8 0.0 1.3e-29 103.5 0.0 3.1 3 0 0 3 3 3 2 ABC transporter AAA_21 PF13304.6 AHV92909.1 - 5.7e-18 65.8 1.0 0.00017 21.5 0.0 4.4 3 1 1 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system ABC_tran_Xtn PF12848.7 AHV92909.1 - 3.7e-16 58.9 9.4 2.3e-14 53.2 5.9 2.5 2 0 0 2 2 2 1 ABC transporter SMC_N PF02463.19 AHV92909.1 - 5.5e-08 32.5 1.8 0.2 11.1 0.0 4.1 3 1 0 4 4 4 3 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 AHV92909.1 - 1.8e-06 27.6 1.0 0.012 15.3 0.0 2.7 2 0 0 2 2 2 2 P-loop containing region of AAA domain MMR_HSR1 PF01926.23 AHV92909.1 - 6.3e-06 26.2 0.0 0.02 15.0 0.0 2.7 2 0 0 2 2 2 2 50S ribosome-binding GTPase AAA_23 PF13476.6 AHV92909.1 - 7.1e-06 26.7 4.8 0.0052 17.3 0.0 3.2 3 0 0 3 3 3 2 AAA domain AAA_22 PF13401.6 AHV92909.1 - 8.3e-05 22.9 0.2 0.026 14.8 0.0 3.1 2 1 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 AHV92909.1 - 0.00018 21.4 0.0 0.024 14.6 0.0 2.3 2 0 0 2 2 2 1 RsgA GTPase DLIC PF05783.11 AHV92909.1 - 0.00021 20.3 0.1 0.11 11.2 0.0 2.3 2 0 0 2 2 2 2 Dynein light intermediate chain (DLIC) AAA_18 PF13238.6 AHV92909.1 - 0.00043 20.8 0.0 1.1 9.8 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_33 PF13671.6 AHV92909.1 - 0.00066 19.9 0.1 0.69 10.1 0.0 2.7 2 0 0 2 2 2 1 AAA domain SbcCD_C PF13558.6 AHV92909.1 - 0.0025 18.0 1.7 0.97 9.7 0.0 4.1 2 2 0 2 2 2 1 Putative exonuclease SbcCD, C subunit MeaB PF03308.16 AHV92909.1 - 0.0028 16.7 0.1 0.86 8.5 0.0 2.3 2 0 0 2 2 2 2 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_28 PF13521.6 AHV92909.1 - 0.0032 17.7 1.2 0.27 11.4 0.0 3.3 4 0 0 4 4 3 1 AAA domain AAA_13 PF13166.6 AHV92909.1 - 0.005 15.6 1.6 2.1 6.9 0.0 3.1 3 0 0 3 3 3 2 AAA domain AAA_16 PF13191.6 AHV92909.1 - 0.0074 16.7 4.9 0.66 10.3 0.0 2.9 3 1 0 3 3 2 1 AAA ATPase domain AAA_24 PF13479.6 AHV92909.1 - 0.013 15.3 0.8 3.1 7.5 0.0 2.8 3 0 0 3 3 2 0 AAA domain AAA_14 PF13173.6 AHV92909.1 - 0.014 15.4 0.0 1.6 8.8 0.0 2.9 3 0 0 3 3 2 0 AAA domain AAA_27 PF13514.6 AHV92909.1 - 0.02 14.5 0.0 0.63 9.6 0.0 2.7 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 AHV92909.1 - 0.021 14.0 0.4 3.2 6.9 0.0 2.8 3 0 0 3 3 3 0 NB-ARC domain AAA PF00004.29 AHV92909.1 - 0.04 14.3 0.1 1.2 9.6 0.0 3.0 3 1 0 3 3 2 0 ATPase family associated with various cellular activities (AAA) cobW PF02492.19 AHV92909.1 - 0.043 13.4 0.3 6.6 6.3 0.0 2.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Dynamin_N PF00350.23 AHV92909.1 - 0.044 13.8 4.8 0.5 10.4 0.0 2.8 3 1 0 3 3 2 0 Dynamin family Arf PF00025.21 AHV92909.1 - 0.053 13.0 0.0 1.3 8.5 0.0 2.3 2 0 0 2 2 2 0 ADP-ribosylation factor family Cytidylate_kin PF02224.18 AHV92909.1 - 0.17 11.6 0.3 1.4 8.6 0.0 2.3 2 0 0 2 2 2 0 Cytidylate kinase RNA_helicase PF00910.22 AHV92909.1 - 0.2 12.0 0.1 8.5 6.8 0.0 2.3 2 0 0 2 2 2 0 RNA helicase Roc PF08477.13 AHV92909.1 - 0.21 11.8 1.1 14 5.9 0.0 2.8 3 0 0 3 3 3 0 Ras of Complex, Roc, domain of DAPkinase AAA_15 PF13175.6 AHV92909.1 - 0.24 11.0 4.2 4.7 6.8 0.0 2.8 2 1 1 3 3 3 0 AAA ATPase domain ATP_bind_1 PF03029.17 AHV92909.1 - 0.24 11.1 0.0 29 4.3 0.0 2.3 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_30 PF13604.6 AHV92909.1 - 0.83 9.3 6.5 8.4 6.1 0.0 3.6 4 0 0 4 4 4 0 AAA domain NACHT PF05729.12 AHV92909.1 - 1.3 8.9 5.1 13 5.7 0.1 2.7 3 0 0 3 3 2 0 NACHT domain Oxidored-like PF09791.9 AHV92910.1 - 7.5e-15 54.3 4.6 9.7e-15 54.0 4.6 1.1 1 0 0 1 1 1 1 Oxidoreductase-like protein, N-terminal SHNi-TPR PF10516.9 AHV92910.1 - 0.021 14.3 0.0 0.028 13.9 0.0 1.2 1 0 0 1 1 1 0 SHNi-TPR DUF4880 PF16220.5 AHV92910.1 - 0.025 14.4 0.1 0.042 13.7 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4880) BRK PF07533.16 AHV92910.1 - 0.13 11.9 0.1 0.19 11.3 0.1 1.3 1 0 0 1 1 1 0 BRK domain DUF5522 PF17653.1 AHV92910.1 - 0.14 12.2 2.9 0.22 11.5 2.9 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5522) Iron_permease PF04120.12 AHV92911.1 - 3.4e-48 162.7 0.1 4.1e-48 162.4 0.1 1.1 1 0 0 1 1 1 1 Low affinity iron permease HWE_HK PF07536.14 AHV92911.1 - 0.12 13.1 0.4 0.21 12.3 0.2 1.5 2 0 0 2 2 2 0 HWE histidine kinase DDE_Tnp_ISL3 PF01610.17 AHV92912.1 - 5.4e-36 124.5 0.6 5.9e-36 124.4 0.6 1.0 1 0 0 1 1 1 1 Transposase SLT_L PF14718.6 AHV92912.1 - 0.0019 18.3 1.6 0.0041 17.2 1.6 1.5 1 0 0 1 1 1 1 Soluble lytic murein transglycosylase L domain Band_7 PF01145.25 AHV92913.1 - 5.7e-30 104.6 5.9 2.8e-29 102.4 5.9 2.0 1 1 0 1 1 1 1 SPFH domain / Band 7 family Band_7_C PF16200.5 AHV92913.1 - 1.8e-27 95.1 6.6 2.9e-27 94.5 0.1 2.6 2 0 0 2 2 2 1 C-terminal region of band_7 Pox_A11 PF05061.13 AHV92913.1 - 0.01 15.2 0.5 0.016 14.5 0.4 1.3 1 1 0 1 1 1 0 Poxvirus A11 Protein DUF4600 PF15372.6 AHV92913.1 - 0.091 13.2 1.5 1.7 9.1 1.5 2.2 1 1 0 1 1 1 0 Domain of unknown function (DUF4600) DUF3141 PF11339.8 AHV92914.1 - 3.2e-140 468.3 0.1 3.5e-140 468.2 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3141) Abhydrolase_6 PF12697.7 AHV92914.1 - 8.1e-05 23.3 0.1 9.9e-05 23.0 0.1 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family FAA_hydrolase PF01557.18 AHV92915.1 - 3.8e-63 213.1 0.1 4.5e-63 212.8 0.1 1.0 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family DUF2437 PF10370.9 AHV92915.1 - 0.1 13.5 0.0 0.46 11.4 0.0 2.3 1 1 0 1 1 1 0 Domain of unknown function (DUF2437) Formyl_trans_N PF00551.19 AHV92916.1 - 6.5e-39 133.5 0.2 8e-39 133.2 0.2 1.1 1 0 0 1 1 1 1 Formyl transferase ACT PF01842.25 AHV92916.1 - 3.9e-08 32.9 0.0 1.9e-06 27.5 0.0 2.7 2 0 0 2 2 2 1 ACT domain ACT_6 PF13740.6 AHV92916.1 - 3.3e-06 27.0 0.0 1e-05 25.4 0.0 1.9 2 0 0 2 2 2 1 ACT domain Lysine_decarbox PF03641.14 AHV92917.1 - 1.1e-31 109.7 0.0 1.9e-31 108.9 0.0 1.4 1 0 0 1 1 1 1 Possible lysine decarboxylase LDcluster4 PF18306.1 AHV92917.1 - 8.2e-18 64.5 0.0 1.2e-17 64.0 0.0 1.2 1 0 0 1 1 1 1 SLOG cluster4 family DNA_processg_A PF02481.15 AHV92917.1 - 0.0003 20.1 0.3 0.00039 19.7 0.3 1.1 1 0 0 1 1 1 1 DNA recombination-mediator protein A DnaJ_C PF01556.18 AHV92918.1 - 5.6e-41 140.1 0.0 7.2e-41 139.7 0.0 1.1 1 0 0 1 1 1 1 DnaJ C terminal domain DnaJ PF00226.31 AHV92918.1 - 8.4e-28 96.3 5.0 1.3e-27 95.7 5.0 1.3 1 0 0 1 1 1 1 DnaJ domain DnaJ_CXXCXGXG PF00684.19 AHV92918.1 - 3.2e-14 53.1 17.4 5.2e-14 52.4 17.4 1.4 1 0 0 1 1 1 1 DnaJ central domain Anti-TRAP PF15777.5 AHV92918.1 - 0.00016 21.5 18.5 0.03 14.3 5.0 2.6 1 1 1 2 2 2 2 Tryptophan RNA-binding attenuator protein inhibitory protein LprI PF07007.12 AHV92918.1 - 0.077 13.7 0.1 0.14 12.8 0.1 1.4 1 0 0 1 1 1 0 Lysozyme inhibitor LprI SCP_3 PF17844.1 AHV92918.1 - 0.098 12.4 0.0 0.18 11.6 0.0 1.4 1 0 0 1 1 1 0 Bacterial SCP ortholog Cytochrome_C7 PF14522.6 AHV92918.1 - 0.099 12.7 9.5 0.14 12.2 1.3 2.4 1 1 1 2 2 2 0 Cytochrome c7 and related cytochrome c Cytochrom_c3_2 PF14537.6 AHV92918.1 - 0.27 11.7 6.1 1.1 9.8 6.1 2.0 1 1 0 1 1 1 0 Cytochrome c3 zf-RING_10 PF16685.5 AHV92918.1 - 0.44 10.7 0.1 0.44 10.7 0.1 1.9 2 0 0 2 2 2 0 zinc RING finger of MSL2 Cytochrome_CBB3 PF13442.6 AHV92918.1 - 2.3 8.6 14.8 1.1 9.7 0.9 3.2 1 1 1 2 2 2 0 Cytochrome C oxidase, cbb3-type, subunit III HypA PF01155.19 AHV92918.1 - 2.5 8.2 8.5 25 4.9 4.2 2.3 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Cytochrom_CIII PF02085.16 AHV92918.1 - 3.1 8.2 6.7 36 4.8 0.4 2.3 1 1 1 2 2 2 0 Class III cytochrome C family TackOD1 PF18551.1 AHV92918.1 - 3.3 7.4 6.8 0.4 10.3 0.5 2.0 1 1 1 2 2 2 0 Thaumarchaeal output domain 1 DZR PF12773.7 AHV92918.1 - 6.8 6.8 11.8 25 5.0 11.8 1.9 1 1 0 1 1 1 0 Double zinc ribbon DLH PF01738.18 AHV92920.1 - 1.3e-57 194.9 0.1 1.5e-57 194.6 0.1 1.0 1 0 0 1 1 1 1 Dienelactone hydrolase family Chlorophyllase PF07224.11 AHV92920.1 - 0.0037 16.3 0.0 0.0049 15.9 0.0 1.1 1 0 0 1 1 1 1 Chlorophyllase Abhydrolase_1 PF00561.20 AHV92920.1 - 0.016 14.8 0.1 0.026 14.2 0.1 1.4 1 0 0 1 1 1 0 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 AHV92920.1 - 0.026 13.8 0.2 0.68 9.1 0.1 2.5 1 1 1 2 2 2 0 Serine aminopeptidase, S33 Chlorophyllase2 PF12740.7 AHV92920.1 - 0.076 11.9 0.0 0.12 11.3 0.0 1.2 1 0 0 1 1 1 0 Chlorophyllase enzyme AA_permease_2 PF13520.6 AHV92922.1 - 6.3e-51 173.5 43.9 8.2e-51 173.2 43.9 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 AHV92922.1 - 9.3e-18 64.1 36.8 1.3e-17 63.6 36.8 1.2 1 0 0 1 1 1 1 Amino acid permease BPD_transp_2 PF02653.16 AHV92923.1 - 3.2e-38 131.4 33.7 3.2e-38 131.4 33.7 1.8 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component ABC_tran PF00005.27 AHV92923.1 - 7.6e-26 91.3 0.0 1.1e-25 90.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.8 AHV92923.1 - 2.1e-10 40.3 0.2 3.8e-10 39.4 0.2 1.4 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_21 PF13304.6 AHV92923.1 - 2.2e-10 40.9 0.2 0.00069 19.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 AHV92923.1 - 6.6e-05 23.5 0.1 0.0001 22.9 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 AHV92923.1 - 0.00022 20.9 0.1 0.0005 19.7 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 AHV92923.1 - 0.0006 19.7 0.0 0.0012 18.8 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_15 PF13175.6 AHV92923.1 - 0.0031 17.3 0.0 0.052 13.2 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_30 PF13604.6 AHV92923.1 - 0.0047 16.7 0.3 0.012 15.3 0.3 1.7 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 AHV92923.1 - 0.0086 15.5 0.1 0.055 12.9 0.0 1.9 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_27 PF13514.6 AHV92923.1 - 0.01 15.5 0.0 0.019 14.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.23 AHV92923.1 - 0.014 15.5 0.0 0.028 14.5 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase MukB PF04310.12 AHV92923.1 - 0.015 15.1 0.2 0.023 14.5 0.2 1.2 1 0 0 1 1 1 0 MukB N-terminal AAA_16 PF13191.6 AHV92923.1 - 0.042 14.2 0.4 0.082 13.3 0.4 1.5 1 0 0 1 1 1 0 AAA ATPase domain Sigma_M_inh PF17453.2 AHV92923.1 - 0.053 14.0 7.2 1.1 9.7 1.6 3.2 3 0 0 3 3 2 0 Sigma-M inhibitor Mg_chelatase PF01078.21 AHV92923.1 - 0.096 12.1 0.2 0.16 11.3 0.2 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI NMT1 PF09084.11 AHV92924.1 - 5.2e-15 56.0 0.1 8.2e-15 55.3 0.1 1.2 1 0 0 1 1 1 1 NMT1/THI5 like NMT1_2 PF13379.6 AHV92924.1 - 2.3e-09 37.3 0.1 7e-09 35.7 0.1 1.7 1 1 0 1 1 1 1 NMT1-like family Phosphonate-bd PF12974.7 AHV92924.1 - 2.1e-08 34.0 0.3 3.2e-08 33.5 0.3 1.3 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1_3 PF16868.5 AHV92924.1 - 0.0032 17.0 0.0 0.0054 16.2 0.0 1.3 1 0 0 1 1 1 1 NMT1-like family YhfZ_C PF14503.6 AHV92924.1 - 0.14 11.6 0.0 8.7 5.8 0.0 2.2 2 0 0 2 2 2 0 YhfZ C-terminal domain Pribosyltran PF00156.27 AHV92925.1 - 1e-06 28.3 1.0 1.9e-06 27.5 0.3 1.8 2 1 0 2 2 2 1 Phosphoribosyl transferase domain UPRTase PF14681.6 AHV92925.1 - 0.096 12.1 0.1 0.15 11.5 0.1 1.2 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase zf-ribbon_3 PF13248.6 AHV92925.1 - 0.29 10.6 2.9 0.52 9.8 2.9 1.4 1 0 0 1 1 1 0 zinc-ribbon domain ParA PF10609.9 AHV92926.1 - 3.4e-101 337.8 0.0 4.2e-101 337.5 0.0 1.1 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase FeS_assembly_P PF01883.19 AHV92926.1 - 2.2e-14 53.4 1.6 3.3e-13 49.6 0.1 3.1 3 0 0 3 3 3 1 Iron-sulfur cluster assembly protein CbiA PF01656.23 AHV92926.1 - 9.7e-14 51.5 0.0 3e-13 49.9 0.0 1.8 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 AHV92926.1 - 6.4e-11 42.5 0.1 6.5e-09 36.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain MipZ PF09140.11 AHV92926.1 - 4.7e-09 35.9 0.0 6.5e-09 35.4 0.0 1.3 1 0 0 1 1 1 1 ATPase MipZ Fer4_NifH PF00142.18 AHV92926.1 - 8.1e-07 28.8 0.1 2.6e-05 23.8 0.1 2.5 1 1 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.15 AHV92926.1 - 3.5e-05 23.1 2.2 0.0003 20.1 0.8 2.2 2 0 0 2 2 2 1 Anion-transporting ATPase VirC1 PF07015.11 AHV92926.1 - 0.00035 19.9 0.1 0.0033 16.8 0.1 2.0 2 0 0 2 2 2 1 VirC1 protein Sensor PF13796.6 AHV92926.1 - 0.0037 17.3 0.1 0.0074 16.4 0.1 1.5 1 0 0 1 1 1 1 Putative sensor AAA_25 PF13481.6 AHV92926.1 - 0.022 14.4 0.3 0.079 12.5 0.1 1.9 2 0 0 2 2 2 0 AAA domain CLP1_P PF16575.5 AHV92926.1 - 0.051 13.4 0.0 0.098 12.4 0.0 1.5 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_26 PF13500.6 AHV92926.1 - 0.19 11.5 1.8 8.8 6.1 0.1 2.4 2 1 0 2 2 2 0 AAA domain CBP_BcsQ PF06564.12 AHV92926.1 - 0.25 10.8 0.8 2.5 7.5 0.3 2.1 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsQ TonB_dep_Rec PF00593.24 AHV92927.1 - 2.2e-38 133.4 7.9 2.2e-38 133.4 7.9 1.4 1 1 0 1 1 1 1 TonB dependent receptor Plug PF07715.15 AHV92927.1 - 3.7e-13 50.0 0.1 9.1e-13 48.7 0.1 1.6 1 0 0 1 1 1 1 TonB-dependent Receptor Plug Domain AtuA PF07287.11 AHV92928.1 - 1.7e-121 405.2 0.0 2.1e-121 404.9 0.0 1.0 1 0 0 1 1 1 1 Acyclic terpene utilisation family protein AtuA Ribosomal_L23 PF00276.20 AHV92929.1 - 7.8e-30 103.1 2.4 8.8e-30 102.9 2.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L23 Bac_DNA_binding PF00216.21 AHV92929.1 - 0.0029 17.8 1.5 0.0034 17.5 1.5 1.2 1 0 0 1 1 1 1 Bacterial DNA-binding protein MIase PF02426.16 AHV92929.1 - 0.083 13.1 0.1 0.13 12.4 0.1 1.4 1 1 0 1 1 1 0 Muconolactone delta-isomerase rve_3 PF13683.6 AHV92930.1 - 8.3e-32 108.8 0.1 4.5e-31 106.4 0.0 2.2 2 0 0 2 2 2 1 Integrase core domain rve PF00665.26 AHV92930.1 - 4.2e-25 88.2 0.0 1.1e-23 83.7 0.0 2.2 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 AHV92930.1 - 1.8e-11 44.0 8.6 3.6e-11 43.0 8.6 1.5 1 0 0 1 1 1 1 HTH-like domain rve_2 PF13333.6 AHV92930.1 - 5.8e-07 29.6 0.0 1.3e-06 28.5 0.0 1.6 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AHV92930.1 - 0.00041 20.6 0.0 0.00091 19.5 0.0 1.6 1 1 1 2 2 2 1 DDE domain Rhomboid_SP PF12595.8 AHV92930.1 - 0.0081 15.6 0.3 2.2 7.6 0.0 2.3 1 1 0 2 2 2 2 Rhomboid serine protease DUF1780 PF08682.10 AHV92930.1 - 0.13 11.9 1.0 1.6 8.3 0.3 2.2 2 0 0 2 2 2 0 Putative endonuclease, protein of unknown function (DUF1780) Acetyltransf_10 PF13673.7 AHV92931.1 - 3.1e-20 72.4 0.1 3.6e-20 72.2 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 AHV92931.1 - 7.9e-11 42.2 0.1 1.1e-10 41.8 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 AHV92931.1 - 5.4e-09 36.3 0.1 6.5e-09 36.1 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family FR47 PF08445.10 AHV92931.1 - 2.8e-06 27.2 0.1 5e-06 26.4 0.1 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_5 PF13444.6 AHV92931.1 - 0.0043 17.7 0.2 0.038 14.7 0.2 2.3 2 1 1 3 3 3 1 Acetyltransferase (GNAT) domain PanZ PF12568.8 AHV92931.1 - 0.2 11.4 0.2 0.59 9.9 0.0 1.9 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain, PanZ DEAD PF00270.29 AHV92932.1 - 2.3e-48 164.3 0.1 6.1e-48 162.9 0.0 1.7 2 1 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 AHV92932.1 - 2.9e-26 92.0 0.0 8.4e-25 87.3 0.0 2.3 2 0 0 2 2 2 1 Helicase conserved C-terminal domain AAA_19 PF13245.6 AHV92932.1 - 5.9e-07 29.9 0.3 0.0057 17.0 0.0 2.4 2 0 0 2 2 2 2 AAA domain ResIII PF04851.15 AHV92932.1 - 2.1e-05 24.6 0.0 4.7e-05 23.5 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit UTP25 PF06862.12 AHV92932.1 - 0.00049 19.0 0.0 2.2 7.0 0.0 3.8 2 1 1 3 3 3 1 Utp25, U3 small nucleolar RNA-associated SSU processome protein 25 UvrD-helicase PF00580.21 AHV92932.1 - 0.0097 15.5 0.0 0.18 11.3 0.0 2.1 2 0 0 2 2 2 1 UvrD/REP helicase N-terminal domain AAA_22 PF13401.6 AHV92932.1 - 0.013 15.8 0.9 0.099 12.9 0.6 2.6 1 1 1 2 2 2 0 AAA domain SPOR PF05036.13 AHV92932.1 - 0.084 13.3 0.3 5.2 7.5 0.1 2.5 2 0 0 2 2 2 0 Sporulation related domain Rieske PF00355.26 AHV92933.1 - 5.6e-14 51.9 0.2 1.1e-13 50.9 0.2 1.6 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Ring_hydroxyl_A PF00848.19 AHV92933.1 - 0.0011 19.0 0.4 0.0025 17.8 0.4 1.6 1 0 0 1 1 1 1 Ring hydroxylating alpha subunit (catalytic domain) Aminotran_5 PF00266.19 AHV92934.1 - 1.2e-45 156.1 0.0 1.4e-45 155.8 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Molybdop_Fe4S4 PF04879.16 AHV92935.1 - 5.2e-19 68.0 0.2 9e-19 67.2 0.2 1.4 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Molybdopterin PF00384.22 AHV92935.1 - 9e-07 28.2 0.1 1.1e-06 27.9 0.1 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase TAT_signal PF10518.9 AHV92935.1 - 0.007 16.2 0.4 0.007 16.2 0.4 2.0 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence Rieske_3 PF18465.1 AHV92935.1 - 0.01 16.1 1.5 9.1 6.6 1.0 3.0 2 1 1 3 3 3 2 Rieske 3Fe-4S DUF1841 PF08897.11 AHV92936.1 - 7.3e-58 194.4 0.3 8.3e-58 194.2 0.3 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1841) DSBA PF01323.20 AHV92936.1 - 0.013 15.3 0.0 0.029 14.2 0.0 1.5 2 0 0 2 2 2 0 DSBA-like thioredoxin domain ABC_tran PF00005.27 AHV92937.1 - 2.1e-35 122.2 0.0 2.9e-35 121.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.8 AHV92937.1 - 2e-07 30.8 0.1 4.6e-07 29.6 0.1 1.7 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_21 PF13304.6 AHV92937.1 - 2.9e-05 24.0 0.2 0.086 12.6 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA PF00004.29 AHV92937.1 - 0.00011 22.6 0.0 0.46 10.9 0.0 2.2 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) SMC_N PF02463.19 AHV92937.1 - 0.025 14.0 0.1 0.14 11.6 0.1 1.9 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 AHV92937.1 - 0.031 14.8 0.2 0.24 11.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.6 AHV92937.1 - 0.06 13.6 0.1 0.36 11.1 0.1 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.6 AHV92937.1 - 0.16 11.7 0.0 0.33 10.7 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain NMT1 PF09084.11 AHV92938.1 - 2.2e-22 80.1 0.7 1.6e-21 77.3 0.7 2.3 1 1 0 1 1 1 1 NMT1/THI5 like NMT1_2 PF13379.6 AHV92938.1 - 2.8e-12 46.9 0.7 1.1e-11 44.9 0.7 1.9 1 1 0 1 1 1 1 NMT1-like family NMT1_3 PF16868.5 AHV92938.1 - 8e-06 25.5 0.2 2.2e-05 24.0 0.0 1.6 1 1 1 2 2 2 1 NMT1-like family SBP_bac_3 PF00497.20 AHV92938.1 - 0.00063 19.2 0.2 0.0052 16.2 0.1 2.0 1 1 1 2 2 2 1 Bacterial extracellular solute-binding proteins, family 3 Phosphonate-bd PF12974.7 AHV92938.1 - 0.0068 16.0 0.6 0.044 13.4 0.6 2.1 1 1 1 2 2 2 1 ABC transporter, phosphonate, periplasmic substrate-binding protein DUF3834 PF12916.7 AHV92938.1 - 0.0077 15.5 0.0 0.014 14.6 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3834) RNase_T PF00929.24 AHV92939.1 - 1.5e-32 113.4 0.0 1.9e-32 113.1 0.0 1.1 1 0 0 1 1 1 1 Exonuclease DUF5051 PF16473.5 AHV92939.1 - 2.5e-06 27.6 0.0 8.7e-06 25.8 0.0 1.8 1 1 0 1 1 1 1 3' exoribonuclease, RNase T-like RNase_H_2 PF13482.6 AHV92939.1 - 0.00097 19.2 0.0 0.0063 16.5 0.0 1.9 1 1 0 1 1 1 1 RNase_H superfamily DNA_pol_A_exo1 PF01612.20 AHV92939.1 - 0.038 13.7 0.0 2.2 8.0 0.0 2.2 2 0 0 2 2 2 0 3'-5' exonuclease RmuC PF02646.16 AHV92940.1 - 8.7e-77 258.1 0.0 1.5e-76 257.4 0.0 1.3 1 0 0 1 1 1 1 RmuC family Lipoprotein_20 PF13942.6 AHV92940.1 - 0.015 15.2 2.3 0.034 14.1 2.3 1.6 1 0 0 1 1 1 0 YfhG lipoprotein Apolipoprotein PF01442.18 AHV92940.1 - 0.12 12.2 14.1 0.23 11.3 10.9 2.8 2 1 0 2 2 2 0 Apolipoprotein A1/A4/E domain Cortex-I_coil PF09304.10 AHV92940.1 - 0.24 11.6 4.8 0.54 10.5 1.9 2.6 2 0 0 2 2 2 0 Cortexillin I, coiled coil DUF1690 PF07956.11 AHV92940.1 - 1.9 8.9 4.7 0.48 10.8 0.7 2.0 3 0 0 3 3 3 0 Protein of Unknown function (DUF1690) HMA PF00403.26 AHV92941.1 - 4.9e-10 39.7 0.0 6.1e-10 39.4 0.0 1.1 1 0 0 1 1 1 1 Heavy-metal-associated domain Pantoate_transf PF02548.15 AHV92941.1 - 0.031 13.7 0.1 0.036 13.5 0.1 1.2 1 0 0 1 1 1 0 Ketopantoate hydroxymethyltransferase DNA_binding_1 PF01035.20 AHV92941.1 - 0.083 13.0 0.1 0.098 12.8 0.1 1.2 1 0 0 1 1 1 0 6-O-methylguanine DNA methyltransferase, DNA binding domain Dodecin PF07311.12 AHV92941.1 - 0.14 12.5 0.1 9.5 6.6 0.0 2.1 2 0 0 2 2 2 0 Dodecin AA_kinase PF00696.28 AHV92942.1 - 8.3e-28 97.6 0.7 1e-27 97.3 0.7 1.1 1 0 0 1 1 1 1 Amino acid kinase family DUF3038 PF11237.8 AHV92943.1 - 0.048 13.7 0.0 0.052 13.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3038) Glyco_trans_1_2 PF13524.6 AHV92943.1 - 0.092 13.2 0.8 0.13 12.7 0.8 1.2 1 0 0 1 1 1 0 Glycosyl transferases group 1 Thiolase_N PF00108.23 AHV92944.1 - 1.9e-90 302.7 2.4 2.5e-90 302.3 0.6 1.8 2 0 0 2 2 2 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 AHV92944.1 - 7.1e-43 145.2 3.3 1.4e-42 144.2 0.7 2.4 2 1 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 AHV92944.1 - 0.00092 18.9 3.4 0.044 13.4 0.5 3.4 2 1 0 3 3 3 1 Beta-ketoacyl synthase, N-terminal domain LigD_N PF13298.6 AHV92945.1 - 1.5e-21 76.6 0.0 2.6e-21 75.9 0.0 1.4 1 0 0 1 1 1 1 DNA polymerase Ligase (LigD) DNA_ligase_A_M PF01068.21 AHV92945.1 - 4.7e-21 75.4 0.0 7.2e-21 74.8 0.0 1.1 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_primase_S PF01896.19 AHV92945.1 - 0.032 14.3 0.0 0.16 12.0 0.0 1.9 1 1 0 1 1 1 0 DNA primase small subunit Leu_leader PF08054.11 AHV92945.1 - 1.1 8.9 4.7 4.6 6.9 0.2 3.2 3 0 0 3 3 3 0 Leucine operon leader peptide ABC_tran PF00005.27 AHV92946.1 - 4.1e-29 101.9 0.0 5.5e-29 101.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 AHV92946.1 - 3.1e-18 66.0 0.0 5.3e-18 65.3 0.0 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 AHV92946.1 - 1e-06 28.8 0.0 6e-06 26.3 0.0 1.9 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 AHV92946.1 - 0.0032 17.0 0.0 0.011 15.1 0.0 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 AHV92946.1 - 0.038 14.2 0.6 4.2 7.7 0.1 2.1 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 AHV92946.1 - 0.044 13.3 0.5 1.4 8.5 0.1 2.3 2 0 0 2 2 2 0 AAA domain TctC PF03401.14 AHV92947.1 - 4.8e-19 68.5 0.0 5.6e-19 68.2 0.0 1.1 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor FBPase PF00316.20 AHV92948.1 - 2.6e-63 212.9 0.0 3.9e-63 212.3 0.0 1.2 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase, N-terminal domain Sigma70_r2 PF04542.14 AHV92949.1 - 2.9e-16 59.0 0.2 7.2e-16 57.7 0.1 1.7 2 0 0 2 2 2 1 Sigma-70 region 2 Sigma70_r4 PF04545.16 AHV92949.1 - 8.8e-16 57.2 2.4 5.5e-14 51.4 1.4 2.5 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r3 PF04539.16 AHV92949.1 - 2.4e-11 43.6 0.5 1.5e-10 41.0 0.2 2.2 2 0 0 2 2 2 1 Sigma-70 region 3 Sigma70_r4_2 PF08281.12 AHV92949.1 - 8.5e-09 35.0 6.4 9.4e-08 31.6 1.2 2.9 3 0 0 3 3 3 2 Sigma-70, region 4 HTH_23 PF13384.6 AHV92949.1 - 0.00054 19.7 0.1 0.047 13.5 0.1 2.8 2 0 0 2 2 2 1 Homeodomain-like domain GerE PF00196.19 AHV92949.1 - 0.11 12.1 0.0 0.54 9.8 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family E3_binding PF02817.17 AHV92949.1 - 0.15 12.4 0.3 3.7 8.0 0.1 2.7 3 0 0 3 3 3 0 e3 binding domain Metallophos PF00149.28 AHV92950.1 - 2.4e-07 31.5 0.0 3.8e-07 30.8 0.0 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 AHV92950.1 - 0.0002 21.6 0.0 0.0068 16.6 0.0 2.1 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain MurJ PF03023.14 AHV92951.1 - 6.6e-130 433.7 24.8 8.4e-130 433.4 24.8 1.1 1 0 0 1 1 1 1 Lipid II flippase MurJ Polysacc_synt_3 PF13440.6 AHV92951.1 - 1.2e-09 37.8 5.9 1.2e-09 37.8 5.9 2.8 3 0 0 3 3 3 2 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 AHV92951.1 - 2.3e-05 24.5 17.2 2.3e-05 24.5 17.2 3.6 2 1 2 4 4 4 1 Polysaccharide biosynthesis C-terminal domain ABC_cobalt PF09819.9 AHV92952.1 - 0.0022 18.1 1.1 0.004 17.3 1.1 1.4 1 0 0 1 1 1 1 ABC-type cobalt transport system, permease component Peptidase_M20 PF01546.28 AHV92953.1 - 3.4e-23 82.4 0.0 6.1e-23 81.6 0.0 1.4 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 AHV92953.1 - 6.7e-09 35.6 0.0 1.1e-08 35.0 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain SBF PF01758.16 AHV92954.1 - 1.5e-10 41.1 11.3 3.4e-10 39.9 11.3 1.6 1 0 0 1 1 1 1 Sodium Bile acid symporter family SBF_like PF13593.6 AHV92954.1 - 0.0049 16.2 19.1 0.0097 15.3 19.1 1.4 1 1 0 1 1 1 1 SBF-like CPA transporter family (DUF4137) PP-binding PF00550.25 AHV92955.1 - 0.00034 20.9 0.0 0.00037 20.8 0.0 1.2 1 0 0 1 1 1 1 Phosphopantetheine attachment site ABC_tran PF00005.27 AHV92956.1 - 8.8e-24 84.6 0.0 1.4e-23 83.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 AHV92956.1 - 2.9e-08 33.4 0.1 0.00093 18.7 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 AHV92956.1 - 4.8e-08 33.2 0.6 0.0003 20.7 0.2 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 AHV92956.1 - 5.4e-06 26.1 0.0 1.3e-05 24.9 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 AHV92956.1 - 9.6e-05 23.0 0.0 0.00013 22.5 0.0 1.1 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 AHV92956.1 - 0.0011 18.9 0.0 0.0019 18.1 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_25 PF13481.6 AHV92956.1 - 0.0027 17.3 1.4 0.004 16.7 1.4 1.5 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.6 AHV92956.1 - 0.0058 16.8 0.1 0.065 13.5 0.1 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.6 AHV92956.1 - 0.009 16.2 0.1 0.013 15.7 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 AHV92956.1 - 0.015 15.7 0.9 0.03 14.7 0.9 1.6 1 1 0 1 1 1 0 AAA ATPase domain Mg_chelatase PF01078.21 AHV92956.1 - 0.016 14.6 0.0 0.026 13.9 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_30 PF13604.6 AHV92956.1 - 0.063 13.0 1.3 0.095 12.4 1.3 1.6 1 1 0 1 1 1 0 AAA domain AAA_27 PF13514.6 AHV92956.1 - 0.067 12.8 0.0 0.11 12.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 AHV92956.1 - 0.068 13.1 0.0 0.13 12.1 0.0 1.5 1 0 0 1 1 1 0 NACHT domain MMR_HSR1 PF01926.23 AHV92956.1 - 0.089 12.9 0.0 0.14 12.3 0.0 1.4 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_22 PF13401.6 AHV92956.1 - 0.093 13.0 0.7 0.31 11.3 0.2 1.9 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 AHV92956.1 - 0.12 12.6 0.0 0.28 11.4 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.6 AHV92956.1 - 0.14 11.8 0.0 0.2 11.3 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain TsaE PF02367.17 AHV92956.1 - 0.18 11.8 0.1 0.34 10.9 0.1 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ATP_bind_1 PF03029.17 AHV92956.1 - 0.22 11.2 0.1 0.57 9.9 0.0 1.6 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_10 PF12846.7 AHV92956.1 - 0.26 10.2 0.1 0.38 9.6 0.1 1.2 1 0 0 1 1 1 0 AAA-like domain ABC_ATPase PF09818.9 AHV92956.1 - 0.26 10.0 0.3 0.5 9.1 0.1 1.5 2 0 0 2 2 2 0 Predicted ATPase of the ABC class NTPase_1 PF03266.15 AHV92956.1 - 0.29 11.0 0.3 2 8.3 0.2 2.0 2 0 0 2 2 2 0 NTPase IPPT PF01715.17 AHV92957.1 - 5.5e-86 288.1 0.0 6.8e-86 287.8 0.0 1.0 1 0 0 1 1 1 1 IPP transferase IPT PF01745.16 AHV92957.1 - 3.8e-05 23.2 0.0 0.0034 16.8 0.0 2.8 2 1 1 3 3 3 1 Isopentenyl transferase Cytidylate_kin PF02224.18 AHV92957.1 - 0.0078 16.0 0.0 0.014 15.1 0.0 1.5 1 0 0 1 1 1 1 Cytidylate kinase AAA_33 PF13671.6 AHV92957.1 - 0.031 14.4 0.0 0.081 13.1 0.0 1.9 1 1 0 1 1 1 0 AAA domain zf-HC2 PF13490.6 AHV92957.1 - 3.7 7.9 12.7 0.29 11.4 0.4 4.2 6 0 0 6 6 6 0 Putative zinc-finger GGDEF PF00990.21 AHV92958.1 - 3.1e-28 98.5 0.0 3.4e-28 98.4 0.0 1.0 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain ABC_tran PF00005.27 AHV92959.1 - 3.2e-39 134.6 0.0 4.3e-39 134.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 AHV92959.1 - 5.8e-09 36.2 0.0 0.00017 21.5 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 AHV92959.1 - 7.6e-07 28.8 0.0 6.5e-05 22.5 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 AHV92959.1 - 9.7e-05 22.0 0.0 0.00018 21.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 AHV92959.1 - 0.00041 20.9 0.0 0.00085 19.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 AHV92959.1 - 0.00047 20.4 0.0 0.001 19.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 AHV92959.1 - 0.00079 19.9 0.0 0.0017 18.7 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 AHV92959.1 - 0.00083 19.3 0.0 0.0025 17.7 0.0 1.8 2 0 0 2 2 1 1 RsgA GTPase Mg_chelatase PF01078.21 AHV92959.1 - 0.0015 18.0 0.0 0.0032 16.9 0.0 1.6 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_13 PF13166.6 AHV92959.1 - 0.0017 17.1 0.0 1 7.9 0.0 2.0 2 0 0 2 2 2 2 AAA domain AAA_30 PF13604.6 AHV92959.1 - 0.0018 18.0 0.0 0.0029 17.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 AHV92959.1 - 0.0024 17.7 0.0 0.4 10.3 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain ATPase_2 PF01637.18 AHV92959.1 - 0.0038 17.2 0.0 0.035 14.0 0.0 2.1 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea Rad17 PF03215.15 AHV92959.1 - 0.0054 16.7 0.0 0.0082 16.1 0.0 1.4 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_33 PF13671.6 AHV92959.1 - 0.006 16.7 0.0 0.014 15.5 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 AHV92959.1 - 0.0062 17.1 0.0 0.0096 16.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain cobW PF02492.19 AHV92959.1 - 0.0074 15.9 0.0 0.013 15.1 0.0 1.4 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain T2SSE PF00437.20 AHV92959.1 - 0.0078 15.3 0.0 0.014 14.5 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA PF00004.29 AHV92959.1 - 0.01 16.2 0.0 0.27 11.7 0.0 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) RNA12 PF10443.9 AHV92959.1 - 0.026 13.3 0.0 0.037 12.8 0.0 1.2 1 0 0 1 1 1 0 RNA12 protein AAA_24 PF13479.6 AHV92959.1 - 0.027 14.2 0.0 0.07 12.8 0.0 1.7 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 AHV92959.1 - 0.031 14.7 0.0 0.091 13.2 0.0 1.8 2 0 0 2 2 2 0 RNA helicase SbcCD_C PF13558.6 AHV92959.1 - 0.032 14.4 0.4 0.49 10.7 0.3 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_28 PF13521.6 AHV92959.1 - 0.039 14.2 0.0 0.18 12.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain G-alpha PF00503.20 AHV92959.1 - 0.043 13.0 0.0 0.043 13.0 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit ABC_ATPase PF09818.9 AHV92959.1 - 0.061 12.1 0.2 4.1 6.1 0.1 2.7 2 1 0 2 2 2 0 Predicted ATPase of the ABC class DEAD PF00270.29 AHV92959.1 - 0.061 13.1 0.0 0.076 12.8 0.0 1.2 1 0 0 1 1 1 0 DEAD/DEAH box helicase FtsK_SpoIIIE PF01580.18 AHV92959.1 - 0.062 12.6 0.1 0.16 11.3 0.0 1.6 2 0 0 2 2 2 0 FtsK/SpoIIIE family Sigma54_activat PF00158.26 AHV92959.1 - 0.065 12.9 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain APS_kinase PF01583.20 AHV92959.1 - 0.089 12.7 0.0 0.15 12.0 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_7 PF12775.7 AHV92959.1 - 0.095 12.2 0.0 0.15 11.5 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region Herpes_Helicase PF02689.14 AHV92959.1 - 0.099 10.5 0.0 0.17 9.7 0.0 1.4 1 1 0 1 1 1 0 Helicase PRK PF00485.18 AHV92959.1 - 0.13 12.0 0.0 0.24 11.1 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family Viral_helicase1 PF01443.18 AHV92959.1 - 0.16 11.6 0.0 0.3 10.8 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase LysR_substrate PF03466.20 AHV92960.1 - 2.3e-38 131.6 5.9 3.6e-38 131.0 5.9 1.3 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 AHV92960.1 - 1.9e-12 47.0 2.3 2.5e-12 46.6 0.3 2.3 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family MurB_C PF02873.16 AHV92962.1 - 2e-38 131.1 0.0 3.7e-38 130.2 0.0 1.5 1 0 0 1 1 1 1 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain FAD_binding_4 PF01565.23 AHV92962.1 - 2e-21 76.2 0.2 3e-21 75.6 0.2 1.3 1 0 0 1 1 1 1 FAD binding domain Ribosomal_S15 PF00312.22 AHV92963.1 - 2.8e-38 130.0 0.2 3.3e-38 129.7 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S15 TrbI_Ftype PF09677.10 AHV92963.1 - 0.14 12.5 0.0 0.17 12.2 0.0 1.1 1 0 0 1 1 1 0 Type-F conjugative transfer system protein (TrbI_Ftype) Trp_dioxygenase PF03301.13 AHV92964.1 - 1.5e-69 235.0 0.3 1.7e-66 224.9 0.3 2.8 1 1 0 1 1 1 1 Tryptophan 2,3-dioxygenase MlaD PF02470.20 AHV92965.1 - 5.8e-40 135.5 5.7 1.6e-13 50.8 0.1 4.1 4 0 0 4 4 4 3 MlaD protein ATP-synt_ab PF00006.25 AHV92966.1 - 3.4e-71 239.3 0.0 4.1e-71 239.0 0.0 1.1 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain T3SS_ATPase_C PF18269.1 AHV92966.1 - 4.2e-25 87.4 0.2 8.4e-25 86.4 0.2 1.5 1 0 0 1 1 1 1 T3SS EscN ATPase C-terminal domain ABC_tran PF00005.27 AHV92966.1 - 0.044 14.3 0.1 0.13 12.8 0.1 1.7 2 0 0 2 2 2 0 ABC transporter rve_3 PF13683.6 AHV92967.1 - 8.3e-32 108.8 0.1 4.5e-31 106.4 0.0 2.2 2 0 0 2 2 2 1 Integrase core domain rve PF00665.26 AHV92967.1 - 4.2e-25 88.2 0.0 1.1e-23 83.7 0.0 2.2 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 AHV92967.1 - 1.8e-11 44.0 8.6 3.6e-11 43.0 8.6 1.5 1 0 0 1 1 1 1 HTH-like domain rve_2 PF13333.6 AHV92967.1 - 5.8e-07 29.6 0.0 1.3e-06 28.5 0.0 1.6 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AHV92967.1 - 0.00041 20.6 0.0 0.00091 19.5 0.0 1.6 1 1 1 2 2 2 1 DDE domain Rhomboid_SP PF12595.8 AHV92967.1 - 0.0081 15.6 0.3 2.2 7.6 0.0 2.3 1 1 0 2 2 2 2 Rhomboid serine protease DUF1780 PF08682.10 AHV92967.1 - 0.13 11.9 1.0 1.6 8.3 0.3 2.2 2 0 0 2 2 2 0 Putative endonuclease, protein of unknown function (DUF1780) FliD_C PF07195.12 AHV92968.1 - 4.4e-48 163.8 17.7 4.4e-48 163.8 17.7 2.1 2 1 0 2 2 2 1 Flagellar hook-associated protein 2 C-terminus FliD_N PF02465.18 AHV92968.1 - 0.00049 20.7 1.4 0.00049 20.7 1.4 5.2 2 1 3 5 5 5 1 Flagellar hook-associated protein 2 N-terminus Syntaxin PF00804.25 AHV92968.1 - 0.014 15.1 1.3 0.073 12.7 0.2 2.1 2 0 0 2 2 2 0 Syntaxin Spc7 PF08317.11 AHV92968.1 - 0.024 13.5 0.2 0.23 10.3 0.2 2.0 2 0 0 2 2 2 0 Spc7 kinetochore protein IFT57 PF10498.9 AHV92968.1 - 0.14 11.1 1.3 0.16 10.9 0.5 1.4 2 0 0 2 2 2 0 Intra-flagellar transport protein 57 DUF948 PF06103.11 AHV92968.1 - 0.16 12.3 0.3 0.16 12.3 0.3 2.9 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF948) OEP PF02321.18 AHV92969.1 - 1.4e-56 191.3 28.6 1.2e-33 116.6 11.2 2.1 2 0 0 2 2 2 2 Outer membrane efflux protein MFS_1 PF07690.16 AHV92970.1 - 1.1e-28 100.2 81.5 1.1e-24 87.0 43.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Acatn PF13000.7 AHV92970.1 - 5.4e-15 54.9 4.9 2.1e-11 43.0 1.2 2.4 1 1 1 2 2 2 2 Acetyl-coenzyme A transporter 1 BT1 PF03092.16 AHV92970.1 - 5.5e-05 21.6 1.9 5.5e-05 21.6 1.9 2.5 2 1 0 2 2 2 1 BT1 family Abhydrolase_1 PF00561.20 AHV92971.1 - 3.6e-14 53.0 0.3 6.3e-13 49.0 0.3 2.0 1 1 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 AHV92971.1 - 7e-08 32.0 0.1 1.6e-07 30.8 0.1 1.6 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Peptidase_S9 PF00326.21 AHV92971.1 - 0.052 13.0 0.4 0.5 9.8 0.3 2.3 2 1 0 2 2 2 0 Prolyl oligopeptidase family OEP PF02321.18 AHV92972.1 - 8.8e-51 172.4 28.1 6.3e-28 97.9 5.3 2.1 2 0 0 2 2 2 2 Outer membrane efflux protein DUF839 PF05787.13 AHV92973.1 - 9.4e-42 143.8 0.0 1.1e-41 143.6 0.0 1.0 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF839) PepSY_2 PF13670.6 AHV92973.1 - 0.065 13.2 0.2 2.9 7.9 0.0 2.4 2 0 0 2 2 2 0 Peptidase propeptide and YPEB domain LGT PF01790.18 AHV92975.1 - 7.7e-84 280.7 7.7 8.7e-84 280.5 7.7 1.0 1 0 0 1 1 1 1 Prolipoprotein diacylglyceryl transferase ABC_tran PF00005.27 AHV92976.1 - 7.7e-31 107.4 0.0 1e-30 107.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_29 PF13555.6 AHV92976.1 - 2.7e-05 23.8 0.3 5.6e-05 22.8 0.3 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_21 PF13304.6 AHV92976.1 - 0.00035 20.5 0.4 0.11 12.3 0.1 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 AHV92976.1 - 0.0016 17.9 0.2 0.33 10.3 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 AHV92976.1 - 0.0038 17.6 0.7 0.0051 17.2 0.6 1.6 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 AHV92976.1 - 0.0082 16.1 0.1 0.012 15.5 0.1 1.2 1 0 0 1 1 1 1 RsgA GTPase AAA_25 PF13481.6 AHV92976.1 - 0.039 13.5 0.0 1.6 8.3 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 AHV92976.1 - 0.044 14.3 0.3 0.073 13.6 0.3 1.3 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 AHV92976.1 - 0.05 13.3 0.2 0.16 11.6 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 AHV92976.1 - 0.06 13.6 0.2 0.18 12.1 0.2 1.6 1 1 0 1 1 1 0 AAA domain TrbI PF03743.14 AHV92976.1 - 0.091 12.6 0.0 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 Bacterial conjugation TrbI-like protein NACHT PF05729.12 AHV92976.1 - 0.19 11.6 1.5 0.38 10.7 0.5 1.9 1 1 1 2 2 2 0 NACHT domain AAA_28 PF13521.6 AHV92976.1 - 0.2 11.9 0.1 0.33 11.2 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 AHV92976.1 - 0.22 12.1 0.0 0.36 11.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain FecR PF04773.13 AHV92977.1 - 3.3e-18 66.1 2.2 2e-17 63.6 0.8 2.1 2 0 0 2 2 2 1 FecR protein DUF4860 PF16152.5 AHV92977.1 - 0.11 12.4 0.0 0.39 10.6 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4860) DUF2917 PF11142.8 AHV92977.1 - 0.44 10.0 7.6 1.3 8.4 0.1 3.8 4 1 0 4 4 4 0 Protein of unknown function (DUF2917) EPSP_synthase PF00275.20 AHV92978.1 - 4.9e-104 348.3 6.4 5.8e-104 348.1 6.4 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SBP_bac_8 PF13416.6 AHV92979.1 - 8.8e-12 45.4 0.8 1.5e-11 44.7 0.1 1.6 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein IMPa_N_2 PF18650.1 AHV92979.1 - 0.023 14.0 0.0 0.038 13.3 0.0 1.4 1 0 0 1 1 1 0 Immunomodulating metalloprotease N-terminal domain Inp1 PF12634.7 AHV92980.1 - 0.027 14.5 0.0 0.032 14.2 0.0 1.2 1 0 0 1 1 1 0 Inheritance of peroxisomes protein 1 ErmC PF06308.11 AHV92980.1 - 0.054 13.8 0.2 0.1 13.0 0.2 1.4 1 0 0 1 1 1 0 23S rRNA methylastransferase leader peptide (ErmCL) Abhydrolase_1 PF00561.20 AHV92981.1 - 6.5e-30 104.6 0.4 1e-29 104.0 0.4 1.2 1 0 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 AHV92981.1 - 7.4e-11 41.8 0.0 2.8e-10 39.9 0.0 1.7 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 AHV92981.1 - 6.3e-10 40.0 16.5 1.1e-09 39.3 16.5 1.4 1 1 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.21 AHV92981.1 - 0.068 12.6 0.0 0.37 10.2 0.0 2.0 2 0 0 2 2 2 0 Prolyl oligopeptidase family Peptidase_S28 PF05577.12 AHV92981.1 - 0.085 11.6 0.0 0.13 11.1 0.0 1.2 1 0 0 1 1 1 0 Serine carboxypeptidase S28 Ribosom_S12_S23 PF00164.25 AHV92982.1 - 2.7e-43 146.2 1.0 3.1e-43 146.0 1.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S12/S23 Ribosomal_S12 PF17487.2 AHV92982.1 - 0.088 13.5 0.0 0.15 12.8 0.0 1.3 1 1 0 1 1 1 0 Ribosomal protein S12 Adenylsucc_synt PF00709.21 AHV92984.1 - 9.8e-171 568.3 0.0 1.1e-170 568.1 0.0 1.0 1 0 0 1 1 1 1 Adenylosuccinate synthetase HTH_28 PF13518.6 AHV92986.1 - 0.024 14.8 0.1 0.1 12.7 0.1 2.2 1 0 0 1 1 1 0 Helix-turn-helix domain HPPK PF01288.20 AHV92987.1 - 7.1e-36 123.1 0.0 8.3e-36 122.9 0.0 1.0 1 0 0 1 1 1 1 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) Zip PF02535.22 AHV92988.1 - 3.2e-32 112.1 27.6 3.7e-24 85.6 9.4 2.6 1 1 2 3 3 3 2 ZIP Zinc transporter TssN PF17555.2 AHV92988.1 - 4.4 6.6 10.8 0.23 10.8 0.2 2.1 2 0 0 2 2 2 0 Type VI secretion system, TssN LRR19-TM PF15176.6 AHV92988.1 - 9.5 6.3 5.9 1.2 9.2 1.2 1.9 2 0 0 2 2 2 0 Leucine-rich repeat family 19 TM domain DUF3971 PF13116.6 AHV92990.1 - 1.8e-06 27.7 0.0 4.6e-06 26.4 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function AsmA PF05170.14 AHV92990.1 - 5.3e-06 25.5 0.0 7.6e-06 25.0 0.0 1.2 1 0 0 1 1 1 1 AsmA family DUF748 PF05359.11 AHV92990.1 - 8.2e-05 22.8 0.1 0.43 10.7 0.0 2.9 3 1 0 3 3 3 2 Domain of Unknown Function (DUF748) MaoC_dehydratas PF01575.19 AHV92991.1 - 9.9e-20 70.3 0.0 1.4e-19 69.9 0.0 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 AHV92991.1 - 8.7e-06 25.9 0.0 1.5e-05 25.1 0.0 1.4 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase Mrr_cat PF04471.12 AHV92992.1 - 3.2e-17 62.6 0.0 4.1e-17 62.3 0.0 1.1 1 0 0 1 1 1 1 Restriction endonuclease YwiC PF14256.6 AHV92992.1 - 0.048 14.0 4.1 0.069 13.5 4.1 1.2 1 0 0 1 1 1 0 YwiC-like protein RFamide_26RFa PF11109.8 AHV92992.1 - 0.1 13.1 0.1 0.14 12.7 0.1 1.3 1 0 0 1 1 1 0 Orexigenic neuropeptide Qrfp/P518 adh_short_C2 PF13561.6 AHV92993.1 - 1.3e-27 96.9 0.0 1.5e-27 96.7 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 AHV92993.1 - 3.7e-10 39.6 0.0 4.4e-10 39.3 0.0 1.0 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 AHV92993.1 - 0.0032 17.4 0.0 0.0037 17.2 0.0 1.1 1 0 0 1 1 1 1 KR domain Polyketide_cyc PF03364.20 AHV92994.1 - 2.8e-33 114.9 0.0 3.2e-33 114.7 0.0 1.0 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc2 PF10604.9 AHV92994.1 - 2e-09 37.9 0.0 2.4e-09 37.6 0.0 1.0 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport NTP_transferase PF00483.23 AHV92995.1 - 2.1e-63 214.2 0.0 2.7e-63 213.9 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 AHV92995.1 - 7.8e-13 49.1 0.0 9.8e-13 48.8 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 AHV92995.1 - 0.021 14.6 0.0 0.034 13.9 0.0 1.3 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DegT_DnrJ_EryC1 PF01041.17 AHV92996.1 - 1.1e-65 222.4 0.0 1.3e-65 222.1 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family MaoC_dehydratas PF01575.19 AHV92997.1 - 7.6e-13 48.1 0.0 9.2e-13 47.8 0.0 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 AHV92997.1 - 6.5e-07 29.5 0.0 8.8e-07 29.1 0.0 1.2 1 0 0 1 1 1 1 N-terminal half of MaoC dehydratase tRNA-synt_His PF13393.6 AHV92998.1 - 1.3e-45 156.0 0.0 2e-45 155.4 0.0 1.3 1 0 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.25 AHV92998.1 - 7.5e-23 81.4 0.0 1.1e-22 80.8 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 AHV92998.1 - 2.4e-12 46.8 0.3 8.5e-12 45.1 0.1 2.0 3 0 0 3 3 3 1 Anticodon binding domain tRNA-synt_2 PF00152.20 AHV92998.1 - 5.6e-08 32.2 0.0 2.3e-06 26.9 0.0 2.7 1 1 0 2 2 2 1 tRNA synthetases class II (D, K and N) tRNA-synt_2d PF01409.20 AHV92998.1 - 9.6e-06 25.3 0.0 2.1e-05 24.1 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA_synthFbeta PF17759.1 AHV92998.1 - 0.0021 17.5 0.0 0.0031 17.0 0.0 1.4 1 0 0 1 1 1 1 Phenylalanyl tRNA synthetase beta chain CLM domain LytR_C PF13399.6 AHV92998.1 - 0.2 12.7 1.1 3.3 8.8 0.8 2.5 2 0 0 2 2 2 0 LytR cell envelope-related transcriptional attenuator TetR_N PF00440.23 AHV92999.1 - 4e-09 36.1 0.1 6.6e-09 35.4 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_6 PF13977.6 AHV92999.1 - 2e-05 24.7 0.8 2e-05 24.7 0.8 2.3 1 1 1 2 2 2 1 BetI-type transcriptional repressor, C-terminal TetR_C_11 PF16859.5 AHV92999.1 - 9.4e-05 22.7 4.7 0.00037 20.8 0.3 2.4 2 1 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR PF13972.6 AHV92999.1 - 0.00012 21.8 1.9 0.00016 21.4 0.1 2.0 2 1 0 2 2 2 1 Bacterial transcriptional repressor HTH_11 PF08279.12 AHV92999.1 - 0.0033 17.3 0.2 0.0094 15.9 0.2 1.8 1 1 0 1 1 1 1 HTH domain BAF250_C PF12031.8 AHV92999.1 - 0.0046 16.3 0.7 0.013 14.8 0.7 1.8 1 1 1 2 2 2 1 SWI/SNF-like complex subunit BAF250/Osa TetR_C_24 PF17932.1 AHV92999.1 - 0.0081 16.4 0.4 0.018 15.3 0.1 1.7 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain HTH_20 PF12840.7 AHV92999.1 - 0.025 14.6 0.8 0.078 13.0 0.4 2.0 2 0 0 2 2 1 0 Helix-turn-helix domain HTH_AsnC-type PF13404.6 AHV92999.1 - 0.032 14.0 0.3 0.062 13.1 0.3 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain TetR_C_37 PF18665.1 AHV92999.1 - 0.039 14.6 0.0 0.17 12.5 0.0 1.9 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain HTH_23 PF13384.6 AHV92999.1 - 0.058 13.2 0.0 0.17 11.7 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain PEP-utilisers_N PF05524.13 AHV92999.1 - 0.069 13.3 3.0 0.35 11.1 0.4 2.2 2 1 0 2 2 2 0 PEP-utilising enzyme, N-terminal TetR_C_13 PF16925.5 AHV92999.1 - 0.075 13.0 0.0 0.17 11.8 0.0 1.6 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain HTH_Tnp_1_2 PF13022.6 AHV92999.1 - 0.12 12.5 0.1 0.15 12.2 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase Tfb2_C PF18307.1 AHV92999.1 - 0.13 12.7 0.0 0.31 11.5 0.0 1.6 1 0 0 1 1 1 0 Transcription factor Tfb2 (p52) C-terminal domain FeoC PF09012.10 AHV92999.1 - 0.23 11.6 0.5 0.8 9.8 0.1 2.1 1 1 1 2 2 2 0 FeoC like transcriptional regulator Pyr_redox_2 PF07992.14 AHV93000.1 - 1.4e-57 195.1 1.6 1.8e-57 194.8 1.6 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 AHV93000.1 - 1.1e-39 135.1 2.7 9.9e-39 132.0 0.3 2.9 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 AHV93000.1 - 4.1e-16 59.3 0.9 1.4e-15 57.6 0.2 2.3 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 AHV93000.1 - 2.8e-07 30.1 0.0 4.5e-07 29.4 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 AHV93000.1 - 3.1e-05 23.9 1.0 7.3e-05 22.7 0.4 2.0 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 AHV93000.1 - 8.1e-05 22.0 0.4 0.00026 20.3 0.4 1.8 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain 2-Hacid_dh_C PF02826.19 AHV93000.1 - 0.016 14.6 0.0 0.028 13.8 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DAO PF01266.24 AHV93000.1 - 0.067 12.8 4.8 6.3 6.3 0.0 3.2 2 1 1 3 3 3 0 FAD dependent oxidoreductase F420_oxidored PF03807.17 AHV93000.1 - 0.089 13.4 0.5 0.43 11.2 0.4 2.3 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Response_reg PF00072.24 AHV93001.1 - 1.8e-19 70.0 0.0 3e-19 69.2 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain HTH_8 PF02954.19 AHV93001.1 - 1.4e-13 50.4 0.4 3.6e-13 49.1 0.4 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family HTH_30 PF13556.6 AHV93001.1 - 0.00082 19.1 0.1 0.002 17.9 0.1 1.6 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain HTH_29 PF13551.6 AHV93001.1 - 0.003 17.5 0.3 0.012 15.6 0.1 2.1 3 0 0 3 3 3 1 Winged helix-turn helix HTH_28 PF13518.6 AHV93001.1 - 0.0088 16.1 0.1 0.02 15.0 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HOIP-UBA PF16678.5 AHV93001.1 - 0.03 14.3 0.0 0.037 14.0 0.0 1.4 1 0 0 1 1 1 0 HOIP UBA domain pair HTH_23 PF13384.6 AHV93001.1 - 0.037 13.8 0.1 0.099 12.5 0.1 1.7 1 0 0 1 1 1 0 Homeodomain-like domain DUF2810 PF10928.8 AHV93001.1 - 0.066 13.2 0.0 0.13 12.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2810) TonB_dep_Rec PF00593.24 AHV93002.1 - 1.5e-46 160.2 19.6 1.8e-46 160.0 19.6 1.0 1 0 0 1 1 1 1 TonB dependent receptor OMP_b-brl_3 PF14905.6 AHV93002.1 - 7.5e-05 21.9 0.2 0.0028 16.7 0.0 2.5 2 1 0 2 2 2 2 Outer membrane protein beta-barrel family Ribosomal_L29 PF00831.23 AHV93003.1 - 4.3e-21 74.6 5.0 4.8e-21 74.5 5.0 1.0 1 0 0 1 1 1 1 Ribosomal L29 protein MFS_1 PF07690.16 AHV93004.1 - 1.3e-21 76.9 22.4 1.5e-21 76.7 22.4 1.0 1 0 0 1 1 1 1 Major Facilitator Superfamily MFS_4 PF06779.14 AHV93004.1 - 0.0016 17.8 5.7 0.0025 17.2 5.5 1.4 1 1 0 1 1 1 1 Uncharacterised MFS-type transporter YbfB MFS_1_like PF12832.7 AHV93004.1 - 0.0023 16.9 11.6 0.0028 16.6 11.6 1.0 1 0 0 1 1 1 1 MFS_1 like family TOBE PF03459.17 AHV93006.1 - 1.5e-15 57.2 1.0 1.6e-15 57.1 1.0 1.0 1 0 0 1 1 1 1 TOBE domain THF_DHG_CYH_C PF02882.19 AHV93007.1 - 1.5e-68 229.1 5.2 2.5e-68 228.4 5.2 1.3 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THF_DHG_CYH PF00763.23 AHV93007.1 - 1.9e-41 140.9 0.1 3.6e-41 140.1 0.1 1.4 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain adh_short PF00106.25 AHV93007.1 - 0.02 14.4 0.5 0.053 13.0 0.5 1.8 1 0 0 1 1 1 0 short chain dehydrogenase CATSPERD PF15020.6 AHV93007.1 - 0.3 9.3 0.0 0.42 8.8 0.0 1.1 1 0 0 1 1 1 0 Cation channel sperm-associated protein subunit delta HAD_2 PF13419.6 AHV93008.1 - 1.4e-10 41.6 0.0 2.9e-10 40.5 0.0 1.5 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 AHV93008.1 - 4.2e-05 23.5 0.1 0.00023 21.1 0.0 2.0 2 0 0 2 2 2 1 HAD-hyrolase-like Hydrolase PF00702.26 AHV93008.1 - 0.00039 20.8 0.0 0.0089 16.3 0.0 2.0 1 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 AHV93008.1 - 0.028 14.8 2.6 0.08 13.3 1.9 2.1 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase AAA_27 PF13514.6 AHV93008.1 - 0.16 11.5 0.1 0.28 10.7 0.1 1.3 1 0 0 1 1 1 0 AAA domain Glutaredoxin PF00462.24 AHV93009.1 - 7.3e-20 70.9 0.0 8.7e-20 70.7 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin DUF836 PF05768.14 AHV93009.1 - 7.5e-05 23.1 0.0 8.7e-05 22.9 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) GST_N_3 PF13417.6 AHV93009.1 - 0.00035 20.9 0.0 0.00041 20.7 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.6 AHV93009.1 - 0.03 14.6 0.0 0.037 14.3 0.0 1.1 1 0 0 1 1 1 0 Glutathione S-transferase, N-terminal domain Thioredoxin_3 PF13192.6 AHV93009.1 - 0.041 13.9 0.0 0.051 13.6 0.0 1.1 1 0 0 1 1 1 0 Thioredoxin domain Hist_deacetyl PF00850.19 AHV93010.1 - 3.4e-81 273.1 0.9 4e-81 272.8 0.9 1.1 1 0 0 1 1 1 1 Histone deacetylase domain rve PF00665.26 AHV93011.1 - 7.9e-14 51.9 0.0 3.1e-12 46.7 0.0 2.1 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 AHV93011.1 - 9.1e-12 44.9 8.6 1.8e-11 44.0 8.6 1.5 1 0 0 1 1 1 1 HTH-like domain Rhomboid_SP PF12595.8 AHV93011.1 - 0.0029 17.0 0.4 0.96 8.8 0.0 2.2 1 1 1 2 2 2 2 Rhomboid serine protease Response_reg PF00072.24 AHV93012.1 - 1.2e-05 25.5 0.0 1.7e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 AHV93012.1 - 0.082 13.0 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulatory protein, C terminal SurA_N PF09312.11 AHV93013.1 - 5.4e-34 116.8 9.0 5.4e-34 116.8 9.0 1.8 2 0 0 2 2 2 1 SurA N-terminal domain Rotamase PF00639.21 AHV93013.1 - 5.8e-17 62.4 0.0 1.7e-16 61.0 0.0 1.8 1 0 0 1 1 1 1 PPIC-type PPIASE domain Rotamase_3 PF13616.6 AHV93013.1 - 2.5e-15 57.0 0.0 5.1e-15 56.0 0.0 1.5 1 0 0 1 1 1 1 PPIC-type PPIASE domain SurA_N_3 PF13624.6 AHV93013.1 - 2.7e-15 56.5 9.9 7.8e-15 55.0 6.8 2.1 1 1 1 2 2 2 1 SurA N-terminal domain SurA_N_2 PF13623.6 AHV93013.1 - 6.9e-11 42.2 6.7 1.6e-09 37.7 5.1 2.3 1 1 1 2 2 2 1 SurA N-terminal domain Rotamase_2 PF13145.6 AHV93013.1 - 5.1e-06 27.3 5.3 5.1e-06 27.3 5.3 2.8 2 1 0 2 2 2 1 PPIC-type PPIASE domain Get5_C PF18514.1 AHV93013.1 - 0.09 12.5 0.2 1.2 8.9 0.0 2.8 3 0 0 3 3 3 0 Get5 C-terminal domain DUF5333 PF17267.2 AHV93013.1 - 0.13 12.5 1.0 12 6.1 0.2 2.5 2 0 0 2 2 2 0 Family of unknown function (DUF5333) LZ_Tnp_IS481 PF13011.6 AHV93014.1 - 2.3e-22 79.3 2.6 4.6e-20 71.9 0.4 2.3 1 1 1 2 2 2 1 leucine-zipper of insertion element IS481 HTH_23 PF13384.6 AHV93014.1 - 2.6e-17 62.1 4.4 6.1e-08 32.2 0.1 2.3 2 0 0 2 2 2 2 Homeodomain-like domain HTH_28 PF13518.6 AHV93014.1 - 1.3e-16 60.4 2.6 2.9e-11 43.3 0.1 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_29 PF13551.6 AHV93014.1 - 3.9e-12 46.0 0.6 1.3e-06 28.3 0.0 2.3 2 0 0 2 2 2 2 Winged helix-turn helix HTH_32 PF13565.6 AHV93014.1 - 2.3e-11 44.1 0.7 4.3e-11 43.3 0.7 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_38 PF13936.6 AHV93014.1 - 2.1e-06 27.4 1.8 4.5e-06 26.3 1.1 1.9 2 1 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 AHV93014.1 - 4.2e-06 26.5 3.4 5e-05 23.1 1.2 2.3 2 0 0 2 2 2 1 MarR family HTH_Tnp_ISL3 PF13542.6 AHV93014.1 - 5.9e-06 25.6 1.9 0.0011 18.4 0.6 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 Sigma70_r4_2 PF08281.12 AHV93014.1 - 1.2e-05 24.9 0.1 0.0035 17.0 0.3 2.3 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 AHV93014.1 - 2.3e-05 23.8 0.1 0.00031 20.2 0.2 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 YdaS_antitoxin PF15943.5 AHV93014.1 - 9.9e-05 22.1 0.3 0.13 12.1 0.0 2.6 2 0 0 2 2 2 2 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_24 PF13412.6 AHV93014.1 - 0.00012 21.5 0.2 0.0012 18.4 0.3 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_3 PF01381.22 AHV93014.1 - 0.00013 22.0 0.7 0.0076 16.3 0.3 2.4 2 0 0 2 2 2 1 Helix-turn-helix HTH_Crp_2 PF13545.6 AHV93014.1 - 0.0002 21.3 0.4 0.0015 18.5 0.2 2.2 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_31 PF13560.6 AHV93014.1 - 0.00027 21.2 6.9 0.0014 18.9 2.8 2.9 2 2 0 2 2 2 1 Helix-turn-helix domain Trp_repressor PF01371.19 AHV93014.1 - 0.00036 20.6 0.2 0.0033 17.5 0.1 2.0 2 0 0 2 2 2 1 Trp repressor protein LacI PF00356.21 AHV93014.1 - 0.00049 19.8 1.2 0.0027 17.5 0.7 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family CENP-B_N PF04218.13 AHV93014.1 - 0.00051 19.6 0.0 0.88 9.2 0.1 2.3 2 0 0 2 2 2 2 CENP-B N-terminal DNA-binding domain HTH_5 PF01022.20 AHV93014.1 - 0.00067 19.5 0.0 0.5 10.3 0.0 2.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.19 AHV93014.1 - 0.00069 19.8 0.0 0.018 15.2 0.0 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain SpoIIID PF12116.8 AHV93014.1 - 0.00094 19.2 0.0 0.54 10.4 0.0 2.2 2 0 0 2 2 2 1 Stage III sporulation protein D HTH_IclR PF09339.10 AHV93014.1 - 0.00099 18.9 1.6 0.019 14.7 0.7 2.5 2 0 0 2 2 2 1 IclR helix-turn-helix domain RepB PF07506.11 AHV93014.1 - 0.0011 19.1 0.2 0.21 11.6 0.1 2.3 1 1 1 2 2 2 1 RepB plasmid partitioning protein HTH_11 PF08279.12 AHV93014.1 - 0.0014 18.5 0.5 0.008 16.1 0.5 2.1 2 0 0 2 2 2 1 HTH domain HTH_psq PF05225.16 AHV93014.1 - 0.0016 18.1 0.5 1.3 8.8 0.5 2.3 2 0 0 2 2 2 1 helix-turn-helix, Psq domain GntR PF00392.21 AHV93014.1 - 0.0021 17.6 0.8 0.28 10.8 0.4 2.4 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_AsnC-type PF13404.6 AHV93014.1 - 0.0023 17.7 3.1 0.03 14.2 1.4 2.6 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_Tnp_1 PF01527.20 AHV93014.1 - 0.0025 18.1 0.4 0.052 13.9 0.0 2.2 1 1 1 2 2 2 1 Transposase HTH_17 PF12728.7 AHV93014.1 - 0.003 17.7 0.1 3.5 7.9 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_10 PF04967.12 AHV93014.1 - 0.0047 16.7 0.1 0.028 14.2 0.2 2.0 2 0 0 2 2 2 1 HTH DNA binding domain HTH_35 PF13693.6 AHV93014.1 - 0.0051 16.8 0.9 0.038 14.0 0.6 2.2 1 1 1 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_30 PF13556.6 AHV93014.1 - 0.0058 16.4 0.1 0.97 9.3 0.0 2.3 2 0 0 2 2 2 1 PucR C-terminal helix-turn-helix domain UPF0175 PF03683.13 AHV93014.1 - 0.0061 16.2 0.4 0.052 13.3 0.1 2.2 2 1 1 3 3 2 1 Uncharacterised protein family (UPF0175) HTH_37 PF13744.6 AHV93014.1 - 0.0076 16.2 0.1 0.065 13.2 0.1 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Tnp_4 PF13613.6 AHV93014.1 - 0.0098 15.6 0.1 0.038 13.7 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix of DDE superfamily endonuclease Crp PF00325.20 AHV93014.1 - 0.015 15.0 1.5 0.036 13.7 0.5 2.1 2 0 0 2 2 2 0 Bacterial regulatory proteins, crp family HTH_36 PF13730.6 AHV93014.1 - 0.016 15.1 0.0 0.32 11.0 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain MerR PF00376.23 AHV93014.1 - 0.017 14.9 1.3 1.9 8.3 0.0 2.8 3 0 0 3 3 2 0 MerR family regulatory protein MarR PF01047.22 AHV93014.1 - 0.02 14.8 0.1 0.08 12.9 0.1 2.0 2 0 0 2 2 2 0 MarR family P22_Cro PF14549.6 AHV93014.1 - 0.027 14.3 2.0 5.1 7.0 0.1 2.3 2 0 0 2 2 2 0 DNA-binding transcriptional regulator Cro DUF746 PF05344.11 AHV93014.1 - 0.036 13.9 0.1 0.54 10.1 0.0 2.2 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) HTH_1 PF00126.27 AHV93014.1 - 0.046 13.7 3.0 2.7 8.0 0.5 2.4 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_DeoR PF08220.12 AHV93014.1 - 0.054 13.3 0.1 5.6 6.8 0.0 2.2 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain Glyc_hyd_38C_2 PF18230.1 AHV93014.1 - 0.059 13.5 0.0 0.63 10.2 0.0 2.1 2 0 0 2 2 2 0 Glycosyl hydrolases family 38 C-terminal sub-domain HTH_Tnp_Tc3_2 PF01498.18 AHV93014.1 - 0.076 13.3 1.5 0.24 11.7 0.1 2.5 2 0 0 2 2 2 0 Transposase Sigma54_DBD PF04552.13 AHV93014.1 - 0.09 12.5 0.1 0.16 11.7 0.1 1.4 1 0 0 1 1 1 0 Sigma-54, DNA binding domain HTH_8 PF02954.19 AHV93014.1 - 0.098 12.5 0.9 8.2 6.3 0.8 2.3 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family TrmB PF01978.19 AHV93014.1 - 0.11 12.3 0.0 0.34 10.8 0.1 1.7 2 0 0 2 2 1 0 Sugar-specific transcriptional regulator TrmB HTH_7 PF02796.15 AHV93014.1 - 0.12 12.5 0.4 0.28 11.3 0.1 1.7 2 0 0 2 2 1 0 Helix-turn-helix domain of resolvase DUF1804 PF08822.11 AHV93014.1 - 0.13 12.2 0.2 10 6.1 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1804) HTH_26 PF13443.6 AHV93014.1 - 0.19 12.2 0.0 2 8.9 0.1 2.1 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain DUF977 PF06163.11 AHV93014.1 - 0.2 11.6 0.6 11 6.0 0.1 2.3 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF977) MerR_1 PF13411.6 AHV93014.1 - 0.23 11.6 0.9 1.4 9.1 0.0 2.3 3 0 0 3 3 2 0 MerR HTH family regulatory protein ATE_C PF04377.15 AHV93015.1 - 3.5e-40 137.7 0.1 4.5e-40 137.4 0.1 1.1 1 0 0 1 1 1 1 Arginine-tRNA-protein transferase, C terminus ATE_N PF04376.13 AHV93015.1 - 1.1e-11 44.9 1.6 1.1e-11 44.9 1.6 1.7 2 0 0 2 2 2 1 Arginine-tRNA-protein transferase, N terminus EPF PF17181.4 AHV93015.1 - 0.035 14.1 0.3 0.07 13.1 0.3 1.4 1 0 0 1 1 1 0 Epidermal patterning factor proteins Na_H_Exchanger PF00999.21 AHV93016.1 - 1.9e-60 204.7 46.7 2.4e-60 204.3 46.7 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family HSP70 PF00012.20 AHV93017.1 - 1.1e-175 585.3 0.0 1.2e-175 585.1 0.0 1.0 1 0 0 1 1 1 1 Hsp70 protein MreB_Mbl PF06723.13 AHV93017.1 - 6.7e-14 51.4 0.7 7e-13 48.1 0.1 2.5 2 1 0 2 2 2 1 MreB/Mbl protein FGGY_C PF02782.16 AHV93017.1 - 0.00035 20.4 1.0 0.00077 19.2 1.0 1.6 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain Metallophos PF00149.28 AHV93018.1 - 4.6e-16 59.9 0.0 6.8e-16 59.4 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 AHV93018.1 - 1e-10 42.0 0.0 2.1e-10 41.0 0.0 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain PGA_cap PF09587.10 AHV93018.1 - 0.012 15.0 0.3 0.021 14.3 0.3 1.4 1 1 0 1 1 1 0 Bacterial capsule synthesis protein PGA_cap Metallophos_3 PF14582.6 AHV93018.1 - 0.063 12.6 0.1 4 6.7 0.0 2.2 1 1 1 2 2 2 0 Metallophosphoesterase, calcineurin superfamily MS_channel PF00924.18 AHV93019.1 - 5.4e-46 156.7 0.4 7.3e-46 156.3 0.4 1.1 1 0 0 1 1 1 1 Mechanosensitive ion channel TM_helix PF05552.12 AHV93019.1 - 1.6e-08 34.4 1.3 5.8e-08 32.6 1.3 2.1 1 0 0 1 1 1 1 Conserved TM helix CPP1-like PF11833.8 AHV93019.1 - 2.2 7.9 8.4 0.13 11.9 1.3 2.1 2 0 0 2 2 2 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like TctC PF03401.14 AHV93020.1 - 2.9e-70 236.5 0.0 3.2e-70 236.3 0.0 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor Nif11 PF07862.11 AHV93020.1 - 0.029 14.7 0.1 0.091 13.1 0.0 1.9 2 0 0 2 2 2 0 Nif11 domain SLT_2 PF13406.6 AHV93021.1 - 3.2e-84 282.6 0.0 3.6e-84 282.4 0.0 1.0 1 0 0 1 1 1 1 Transglycosylase SLT domain Glucosaminidase PF01832.20 AHV93021.1 - 0.045 14.3 0.1 0.17 12.4 0.0 2.0 2 0 0 2 2 2 0 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase Aconitase_C PF00694.19 AHV93022.1 - 2e-37 128.5 0.0 2.9e-37 127.9 0.0 1.3 1 0 0 1 1 1 1 Aconitase C-terminal domain SBF_like PF13593.6 AHV93023.1 - 3.9e-82 276.1 17.1 4.7e-82 275.8 17.1 1.0 1 0 0 1 1 1 1 SBF-like CPA transporter family (DUF4137) SBF PF01758.16 AHV93023.1 - 3.7e-14 52.9 12.2 3.7e-14 52.9 12.2 1.5 1 1 0 1 1 1 1 Sodium Bile acid symporter family rve PF00665.26 AHV93024.1 - 2.7e-32 111.4 0.7 4.3e-32 110.8 0.1 1.6 2 0 0 2 2 1 1 Integrase core domain LZ_Tnp_IS481 PF13011.6 AHV93024.1 - 6.7e-22 77.8 2.6 9.9e-20 70.9 0.4 2.6 1 1 1 2 2 2 1 leucine-zipper of insertion element IS481 rve_3 PF13683.6 AHV93024.1 - 1.9e-18 66.0 3.1 4.4e-18 64.8 3.1 1.7 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.6 AHV93024.1 - 5e-17 61.2 4.3 1.2e-07 31.3 0.1 2.7 2 0 0 2 2 2 2 Homeodomain-like domain HTH_28 PF13518.6 AHV93024.1 - 1.2e-15 57.4 6.3 5.9e-11 42.3 0.1 3.4 4 0 0 4 4 3 2 Helix-turn-helix domain HTH_29 PF13551.6 AHV93024.1 - 1.2e-11 44.4 0.8 2.9e-06 27.2 0.0 2.6 2 0 0 2 2 2 2 Winged helix-turn helix HTH_32 PF13565.6 AHV93024.1 - 1.7e-10 41.4 3.5 1.9e-10 41.2 0.8 2.4 2 0 0 2 2 2 1 Homeodomain-like domain HTH_38 PF13936.6 AHV93024.1 - 1.5e-06 27.9 0.6 5.1e-06 26.1 0.5 2.1 2 0 0 2 2 1 1 Helix-turn-helix domain MarR_2 PF12802.7 AHV93024.1 - 6.5e-06 25.9 3.0 7.9e-05 22.5 1.1 2.6 2 0 0 2 2 2 1 MarR family HTH_31 PF13560.6 AHV93024.1 - 1.6e-05 25.2 1.9 0.00059 20.1 0.4 3.2 3 0 0 3 3 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 AHV93024.1 - 2.8e-05 23.7 0.1 0.006 16.2 0.2 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 AHV93024.1 - 5.3e-05 22.7 0.1 0.00061 19.2 0.2 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 YdaS_antitoxin PF15943.5 AHV93024.1 - 0.00023 21.0 0.2 0.24 11.3 0.0 2.8 2 0 0 2 2 2 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_24 PF13412.6 AHV93024.1 - 0.00028 20.4 0.2 0.0021 17.6 0.3 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_3 PF01381.22 AHV93024.1 - 0.00032 20.7 0.7 0.013 15.5 0.3 2.5 2 0 0 2 2 2 1 Helix-turn-helix HTH_Tnp_ISL3 PF13542.6 AHV93024.1 - 0.00034 19.9 8.8 0.0022 17.3 0.6 3.9 4 0 0 4 4 3 1 Helix-turn-helix domain of transposase family ISL3 HTH_Crp_2 PF13545.6 AHV93024.1 - 0.00044 20.2 0.4 0.0029 17.5 0.2 2.3 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain Trp_repressor PF01371.19 AHV93024.1 - 0.00093 19.3 0.2 0.007 16.5 0.1 2.2 2 0 0 2 2 2 1 Trp repressor protein HTH_5 PF01022.20 AHV93024.1 - 0.0011 18.7 0.0 0.44 10.4 0.0 2.5 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family CENP-B_N PF04218.13 AHV93024.1 - 0.0016 18.0 0.0 1.6 8.5 0.1 2.3 2 0 0 2 2 2 1 CENP-B N-terminal DNA-binding domain LacI PF00356.21 AHV93024.1 - 0.0017 18.1 1.8 0.0046 16.7 0.7 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family Fe_dep_repress PF01325.19 AHV93024.1 - 0.002 18.3 0.0 0.034 14.4 0.1 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_11 PF08279.12 AHV93024.1 - 0.0025 17.7 0.5 0.014 15.3 0.6 2.2 2 0 0 2 2 2 1 HTH domain HTH_psq PF05225.16 AHV93024.1 - 0.0025 17.5 0.5 2.4 8.0 0.3 2.9 3 0 0 3 3 3 1 helix-turn-helix, Psq domain HTH_IclR PF09339.10 AHV93024.1 - 0.0025 17.6 1.2 0.036 13.9 0.6 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain SpoIIID PF12116.8 AHV93024.1 - 0.0027 17.7 0.0 1.1 9.4 0.0 2.4 2 0 0 2 2 2 1 Stage III sporulation protein D HTH_17 PF12728.7 AHV93024.1 - 0.0035 17.5 0.9 6.1 7.1 0.0 3.5 4 1 0 4 4 3 0 Helix-turn-helix domain HTH_AsnC-type PF13404.6 AHV93024.1 - 0.0037 17.1 2.7 0.045 13.6 1.1 2.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain RepB PF07506.11 AHV93024.1 - 0.0044 17.1 0.1 0.52 10.4 0.1 2.3 2 0 0 2 2 2 1 RepB plasmid partitioning protein GntR PF00392.21 AHV93024.1 - 0.0052 16.4 0.7 0.5 10.1 0.3 2.5 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_Tnp_1 PF01527.20 AHV93024.1 - 0.0058 16.9 0.4 0.12 12.7 0.0 2.6 1 1 1 2 2 2 1 Transposase HTH_35 PF13693.6 AHV93024.1 - 0.0069 16.4 1.2 0.064 13.3 0.5 2.7 2 1 1 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_10 PF04967.12 AHV93024.1 - 0.0078 16.0 0.1 0.049 13.4 0.2 2.2 2 0 0 2 2 2 1 HTH DNA binding domain HTH_30 PF13556.6 AHV93024.1 - 0.015 15.1 0.1 2 8.3 0.0 2.6 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain UPF0175 PF03683.13 AHV93024.1 - 0.016 14.9 0.5 0.11 12.2 0.1 2.4 2 1 0 2 2 2 0 Uncharacterised protein family (UPF0175) HTH_Tnp_4 PF13613.6 AHV93024.1 - 0.016 14.9 0.1 0.067 12.9 0.0 2.0 2 0 0 2 2 1 0 Helix-turn-helix of DDE superfamily endonuclease HTH_37 PF13744.6 AHV93024.1 - 0.018 15.0 0.1 0.14 12.1 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_36 PF13730.6 AHV93024.1 - 0.02 14.8 0.1 0.56 10.2 0.0 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain KORA PF16509.5 AHV93024.1 - 0.034 14.4 0.1 3.6 8.0 0.0 3.0 3 0 0 3 3 3 0 TrfB plasmid transcriptional repressor MarR PF01047.22 AHV93024.1 - 0.043 13.7 0.1 0.14 12.1 0.1 1.8 2 0 0 2 2 1 0 MarR family P22_Cro PF14549.6 AHV93024.1 - 0.052 13.4 1.6 9.6 6.1 0.1 2.5 2 0 0 2 2 2 0 DNA-binding transcriptional regulator Cro Crp PF00325.20 AHV93024.1 - 0.054 13.2 3.2 0.062 13.0 0.5 2.5 3 0 0 3 3 3 0 Bacterial regulatory proteins, crp family DDE_Tnp_IS240 PF13610.6 AHV93024.1 - 0.066 13.4 0.1 0.096 12.9 0.1 1.2 1 0 0 1 1 1 0 DDE domain DUF746 PF05344.11 AHV93024.1 - 0.085 12.7 0.1 0.98 9.3 0.0 2.3 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) HTH_1 PF00126.27 AHV93024.1 - 0.1 12.6 2.9 4.7 7.2 0.5 2.6 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_26 PF13443.6 AHV93024.1 - 0.17 12.3 0.0 3.6 8.1 0.1 2.8 3 0 0 3 3 3 0 Cro/C1-type HTH DNA-binding domain HTH_8 PF02954.19 AHV93024.1 - 0.19 11.5 0.9 14 5.5 0.7 2.7 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family HTH_Tnp_Tc3_2 PF01498.18 AHV93024.1 - 0.28 11.5 2.6 0.47 10.7 0.1 2.6 3 0 0 3 3 1 0 Transposase HTH_33 PF13592.6 AHV93024.1 - 0.56 9.9 3.1 2.9 7.6 0.1 3.4 4 0 0 4 4 2 0 Winged helix-turn helix MerR PF00376.23 AHV93024.1 - 0.72 9.7 6.8 3.2 7.6 0.0 3.6 4 0 0 4 4 2 0 MerR family regulatory protein DDE_Tnp_ISL3 PF01610.17 AHV93026.1 - 7.9e-65 218.9 1.2 1.1e-64 218.4 0.3 1.6 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV93026.1 - 1.4e-11 43.6 0.1 3.6e-11 42.3 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV93026.1 - 5.3e-09 36.6 11.2 1.1e-08 35.6 11.2 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV93026.1 - 0.0056 16.7 0.2 0.016 15.3 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain SLT_L PF14718.6 AHV93026.1 - 0.016 15.3 1.5 0.016 15.3 1.5 1.8 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain NOB1_Zn_bind PF08772.11 AHV93026.1 - 0.017 15.2 0.2 1.2 9.3 0.0 2.5 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-IS66 PF13005.7 AHV93026.1 - 8.2 6.9 9.6 3.6 8.1 6.6 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 AdoHcyase PF05221.17 AHV93027.1 - 1.3e-146 487.5 0.3 1.4e-146 487.3 0.3 1.0 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.21 AHV93027.1 - 1.6e-80 268.9 2.8 2.4e-80 268.3 2.8 1.3 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.19 AHV93027.1 - 3.5e-09 36.3 0.4 7.7e-09 35.1 0.4 1.5 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain THF_DHG_CYH_C PF02882.19 AHV93027.1 - 0.00051 19.4 2.2 0.0023 17.3 2.2 2.0 1 1 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain IlvN PF07991.12 AHV93027.1 - 0.00065 19.3 0.6 0.0016 18.1 0.6 1.6 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain TrkA_N PF02254.18 AHV93027.1 - 0.0022 18.2 0.8 0.013 15.7 0.3 2.5 2 1 0 2 2 2 1 TrkA-N domain NAD_binding_7 PF13241.6 AHV93027.1 - 0.0061 17.0 1.3 0.017 15.6 1.3 1.7 1 0 0 1 1 1 1 Putative NAD(P)-binding Shikimate_DH PF01488.20 AHV93027.1 - 0.1 12.7 0.4 0.25 11.4 0.4 1.6 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase rve PF00665.26 AHV93028.1 - 7.9e-14 51.9 0.0 3.1e-12 46.7 0.0 2.1 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 AHV93028.1 - 9.1e-12 44.9 8.6 1.8e-11 44.0 8.6 1.5 1 0 0 1 1 1 1 HTH-like domain Rhomboid_SP PF12595.8 AHV93028.1 - 0.0029 17.0 0.4 0.96 8.8 0.0 2.2 1 1 1 2 2 2 2 Rhomboid serine protease ECH_1 PF00378.20 AHV93029.1 - 9.8e-31 107.0 0.6 1.2e-30 106.7 0.6 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 AHV93029.1 - 2.3e-12 47.1 5.2 3.5e-10 39.9 2.1 2.0 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase APOBEC_C PF05240.14 AHV93029.1 - 0.076 13.0 0.1 0.13 12.3 0.1 1.3 1 0 0 1 1 1 0 APOBEC-like C-terminal domain APOBEC2 PF18772.1 AHV93029.1 - 0.2 11.7 0.1 0.29 11.2 0.1 1.2 1 0 0 1 1 1 0 APOBEC2 OmpW PF03922.14 AHV93030.1 - 3.9e-57 193.2 0.0 4.5e-57 193.0 0.0 1.0 1 0 0 1 1 1 1 OmpW family OMP_b-brl PF13505.6 AHV93030.1 - 3.2e-20 73.0 0.2 6.5e-20 72.0 0.2 1.4 1 1 0 1 1 1 1 Outer membrane protein beta-barrel domain Opacity PF02462.15 AHV93030.1 - 0.00071 19.7 0.0 0.0014 18.7 0.0 1.7 1 1 0 1 1 1 1 Opacity family porin protein Autotransporter PF03797.19 AHV93030.1 - 0.0022 17.7 0.8 0.087 12.5 0.0 2.6 1 1 2 3 3 3 2 Autotransporter beta-domain OMP_b-brl_2 PF13568.6 AHV93030.1 - 0.023 14.7 0.0 0.074 13.1 0.0 1.8 2 0 0 2 2 2 0 Outer membrane protein beta-barrel domain MipA PF06629.12 AHV93030.1 - 0.039 14.2 0.1 0.11 12.7 0.1 1.9 1 1 0 1 1 1 0 MltA-interacting protein MipA TonB_dep_Rec PF00593.24 AHV93030.1 - 0.13 12.1 3.2 0.26 11.1 3.2 1.6 1 1 0 1 1 1 0 TonB dependent receptor FAD_binding_2 PF00890.24 AHV93031.1 - 1e-32 113.8 1.2 1.5e-32 113.3 1.2 1.2 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.24 AHV93031.1 - 4.1e-12 46.3 1.6 6.2e-10 39.2 1.6 2.6 1 1 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 AHV93031.1 - 8.5e-10 37.9 3.0 0.00069 18.4 0.0 2.8 3 0 0 3 3 3 2 HI0933-like protein FAD_oxidored PF12831.7 AHV93031.1 - 2.8e-09 36.8 0.2 2.8e-09 36.8 0.2 1.6 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 AHV93031.1 - 5.9e-06 25.7 0.1 0.00036 19.8 0.1 2.3 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 AHV93031.1 - 0.00034 19.9 0.0 0.27 10.5 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 AHV93031.1 - 0.00064 19.9 1.6 0.00078 19.6 0.0 2.0 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 AHV93031.1 - 0.00094 18.4 2.9 0.012 14.8 0.1 2.7 3 0 0 3 3 3 1 Glucose inhibited division protein A Pyr_redox PF00070.27 AHV93031.1 - 0.0014 19.2 0.0 0.15 12.6 0.0 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 AHV93031.1 - 0.0029 16.9 0.0 0.0054 16.0 0.0 1.4 1 1 0 1 1 1 1 FAD binding domain AlaDh_PNT_C PF01262.21 AHV93031.1 - 0.0036 16.6 0.0 0.0036 16.6 0.0 2.4 3 0 0 3 3 3 1 Alanine dehydrogenase/PNT, C-terminal domain Lycopene_cycl PF05834.12 AHV93031.1 - 0.013 14.6 0.2 0.023 13.8 0.0 1.5 2 0 0 2 2 2 0 Lycopene cyclase protein Phage_holin_3_6 PF07332.11 AHV93032.1 - 1.7e-16 60.3 10.3 2e-16 60.0 10.3 1.1 1 0 0 1 1 1 1 Putative Actinobacterial Holin-X, holin superfamily III DUF2975 PF11188.8 AHV93032.1 - 0.0015 18.4 3.4 0.002 18.0 3.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2975) Abhydrolase_6 PF12697.7 AHV93033.1 - 1.9e-08 35.2 11.5 2.3e-06 28.4 11.6 2.3 1 1 1 2 2 2 2 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 AHV93033.1 - 0.0035 16.6 0.3 0.012 14.8 0.0 2.0 3 0 0 3 3 3 1 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 AHV93033.1 - 0.0088 15.7 0.3 0.048 13.3 0.3 1.9 1 1 0 1 1 1 1 alpha/beta hydrolase fold AMP-binding PF00501.28 AHV93034.1 - 2.2e-48 164.9 0.0 3.1e-48 164.4 0.0 1.2 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 AHV93034.1 - 2.6e-09 37.9 0.2 4.8e-09 37.1 0.2 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain DnaJ_C PF01556.18 AHV93036.1 - 1.8e-31 109.2 0.0 6.3e-31 107.5 0.0 1.9 1 1 0 1 1 1 1 DnaJ C terminal domain DnaJ PF00226.31 AHV93036.1 - 8.6e-25 86.6 4.8 6.8e-23 80.6 3.6 2.2 2 0 0 2 2 2 2 DnaJ domain DUF4136 PF13590.6 AHV93037.1 - 9.1e-36 123.4 0.4 1e-35 123.2 0.4 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4136) HR1 PF02185.16 AHV93038.1 - 0.61 10.2 7.9 1.9 8.7 1.5 2.6 2 0 0 2 2 2 0 Hr1 repeat Pep_deformylase PF01327.21 AHV93039.1 - 1.1e-48 164.8 0.0 1.4e-48 164.5 0.0 1.0 1 0 0 1 1 1 1 Polypeptide deformylase PRA-CH PF01502.18 AHV93040.1 - 1.7e-35 120.7 0.3 2.2e-35 120.3 0.3 1.2 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase Sulfate_transp PF00916.20 AHV93041.1 - 2.4e-52 178.0 30.9 1e-26 93.6 4.3 2.3 1 1 1 2 2 2 2 Sulfate permease family STAS PF01740.21 AHV93041.1 - 1.6e-07 31.0 0.0 2.9e-07 30.1 0.0 1.3 1 0 0 1 1 1 1 STAS domain MFS_MOT1 PF16983.5 AHV93041.1 - 0.00013 22.3 36.8 0.00046 20.6 5.1 4.0 3 1 1 4 4 4 3 Molybdate transporter of MFS superfamily STAS_2 PF13466.6 AHV93041.1 - 0.0085 16.4 0.3 0.027 14.8 0.3 1.8 1 0 0 1 1 1 1 STAS domain GSHPx PF00255.19 AHV93042.1 - 9.1e-45 150.7 0.0 1.1e-44 150.4 0.0 1.1 1 0 0 1 1 1 1 Glutathione peroxidase AhpC-TSA PF00578.21 AHV93042.1 - 0.00048 20.0 0.0 0.00063 19.7 0.0 1.3 1 1 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 AHV93042.1 - 0.0011 18.7 0.0 0.0052 16.5 0.0 1.8 2 0 0 2 2 2 1 Redoxin SBP_bac_5 PF00496.22 AHV93043.1 - 1.1e-84 284.6 0.0 1.4e-84 284.3 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle CTP_transf_like PF01467.26 AHV93044.1 - 6.7e-10 39.3 0.0 7.8e-10 39.1 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase-like SBP_bac_8 PF13416.6 AHV93045.1 - 1.5e-35 123.4 1.4 2e-35 123.0 1.4 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 AHV93045.1 - 1e-21 77.5 1.2 1.6e-21 76.8 1.2 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 AHV93045.1 - 1.3e-16 61.5 5.3 1.9e-16 60.9 5.3 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 AHV93045.1 - 0.00032 20.5 0.2 0.0025 17.6 0.0 2.4 1 1 1 2 2 2 1 Bacterial extracellular solute-binding protein Cupin_7 PF12973.7 AHV93046.1 - 2.5e-47 158.7 0.0 8.1e-37 125.0 0.0 2.1 2 0 0 2 2 2 2 ChrR Cupin-like domain Cupin_2 PF07883.11 AHV93046.1 - 4.6e-05 23.0 0.8 0.01 15.5 0.5 2.7 2 1 0 2 2 2 2 Cupin domain DUF4437 PF14499.6 AHV93046.1 - 6.5e-05 22.2 0.1 0.11 11.6 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF4437) DUF4863 PF16155.5 AHV93046.1 - 0.00054 19.8 0.1 0.001 18.9 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4863) DMSP_lyase PF16867.5 AHV93046.1 - 0.034 13.8 0.3 0.064 12.9 0.3 1.4 1 0 0 1 1 1 0 Dimethlysulfonioproprionate lyase DDE_Tnp_ISL3 PF01610.17 AHV93047.1 - 7.9e-65 218.9 1.2 1.1e-64 218.4 0.3 1.6 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV93047.1 - 1.4e-11 43.6 0.1 3.6e-11 42.3 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV93047.1 - 5.3e-09 36.6 11.2 1.1e-08 35.6 11.2 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV93047.1 - 0.0056 16.7 0.2 0.016 15.3 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain SLT_L PF14718.6 AHV93047.1 - 0.016 15.3 1.5 0.016 15.3 1.5 1.8 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain NOB1_Zn_bind PF08772.11 AHV93047.1 - 0.017 15.2 0.2 1.2 9.3 0.0 2.5 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-IS66 PF13005.7 AHV93047.1 - 8.2 6.9 9.6 3.6 8.1 6.6 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 TRAM_2 PF18693.1 AHV93048.1 - 1.4e-24 86.0 2.2 1.7e-24 85.7 2.2 1.1 1 0 0 1 1 1 1 TRAM domain TRAM PF01938.20 AHV93048.1 - 0.00015 21.6 0.0 0.00024 21.0 0.0 1.3 1 0 0 1 1 1 1 TRAM domain S1 PF00575.23 AHV93048.1 - 0.0019 18.5 0.3 0.8 10.1 0.0 2.1 2 0 0 2 2 2 2 S1 RNA binding domain RNase_II_C_S1 PF18614.1 AHV93048.1 - 0.017 15.0 1.4 0.037 14.0 1.3 1.7 1 1 0 1 1 1 0 RNase II-type exonuclease C-terminal S1 domain BPD_transp_2 PF02653.16 AHV93049.1 - 4.3e-28 98.2 44.7 5.2e-19 68.5 26.5 2.0 1 1 1 2 2 2 2 Branched-chain amino acid transport system / permease component BPD_transp_1 PF00528.22 AHV93050.1 - 4.1e-05 23.4 1.6 4.2e-05 23.3 1.6 1.0 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component MFS_1 PF07690.16 AHV93051.1 - 2e-19 69.8 12.9 2e-19 69.8 12.9 1.5 2 0 0 2 2 2 1 Major Facilitator Superfamily MFS_1_like PF12832.7 AHV93051.1 - 0.001 18.0 5.0 0.13 11.1 0.5 2.4 1 1 0 2 2 2 2 MFS_1 like family ATG22 PF11700.8 AHV93051.1 - 0.0021 16.8 7.9 0.057 12.0 0.8 2.8 3 0 0 3 3 3 2 Vacuole effluxer Atg22 like TMEM61 PF15105.6 AHV93051.1 - 0.1 12.4 0.4 0.85 9.4 0.0 2.1 2 0 0 2 2 2 0 TMEM61 protein family AIRS_C PF02769.22 AHV93052.1 - 1.5e-06 28.4 0.0 1.9e-06 28.1 0.0 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain tRNA-synt_2b PF00587.25 AHV93053.1 - 2.6e-46 157.8 0.0 3.9e-46 157.2 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA_edit PF04073.15 AHV93053.1 - 3.4e-30 104.6 0.0 6.4e-30 103.8 0.0 1.5 1 0 0 1 1 1 1 Aminoacyl-tRNA editing domain HGTP_anticodon PF03129.20 AHV93053.1 - 2.4e-20 72.5 0.0 4.6e-20 71.6 0.0 1.5 1 0 0 1 1 1 1 Anticodon binding domain TIR_2 PF13676.6 AHV93053.1 - 0.096 13.3 0.0 0.2 12.3 0.0 1.5 1 0 0 1 1 1 0 TIR domain GCS2 PF04107.13 AHV93054.1 - 3.3e-50 171.1 0.0 4.8e-50 170.6 0.0 1.2 1 0 0 1 1 1 1 Glutamate-cysteine ligase family 2(GCS2) Apolipoprotein PF01442.18 AHV93054.1 - 0.0078 16.1 1.8 2.8 7.8 0.1 3.0 2 1 0 2 2 2 2 Apolipoprotein A1/A4/E domain GHMP_kinases_C PF08544.13 AHV93054.1 - 0.07 13.5 0.2 0.33 11.3 0.2 2.2 1 1 0 1 1 1 0 GHMP kinases C terminal GPP34 PF05719.11 AHV93054.1 - 0.13 12.3 1.4 0.34 10.9 0.1 2.1 2 0 0 2 2 2 0 Golgi phosphoprotein 3 (GPP34) DNA_pol3_chi PF04364.13 AHV93055.1 - 1.1e-39 135.8 0.1 1.2e-39 135.6 0.1 1.0 1 0 0 1 1 1 1 DNA polymerase III chi subunit, HolC OAS1_C PF10421.9 AHV93055.1 - 0.11 12.0 0.0 0.13 11.8 0.0 1.2 1 0 0 1 1 1 0 2'-5'-oligoadenylate synthetase 1, domain 2, C-terminus PBP_like_2 PF12849.7 AHV93056.1 - 1.2e-26 94.0 2.0 1.7e-26 93.5 2.0 1.1 1 0 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.7 AHV93056.1 - 0.011 14.9 0.1 0.025 13.7 0.0 1.7 2 0 0 2 2 2 0 PBP superfamily domain AIRC PF00731.20 AHV93057.1 - 1.7e-57 193.2 2.8 1.9e-57 193.0 2.8 1.0 1 0 0 1 1 1 1 AIR carboxylase Glutaredoxin PF00462.24 AHV93057.1 - 0.1 12.8 0.0 0.23 11.7 0.0 1.5 1 0 0 1 1 1 0 Glutaredoxin NMT1_2 PF13379.6 AHV93058.1 - 2.8e-26 92.8 0.6 9.4e-26 91.0 0.6 1.9 1 1 0 1 1 1 1 NMT1-like family NMT1 PF09084.11 AHV93058.1 - 3e-23 82.9 0.5 5.7e-23 82.0 0.5 1.4 1 0 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.7 AHV93058.1 - 3.5e-07 30.1 0.5 5.2e-07 29.5 0.5 1.3 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein SBP_bac_3 PF00497.20 AHV93058.1 - 2e-05 24.1 0.0 6.8e-05 22.4 0.0 1.9 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 TAT_signal PF10518.9 AHV93058.1 - 0.00036 20.3 2.9 0.00036 20.3 2.9 3.6 3 0 0 3 3 3 1 TAT (twin-arginine translocation) pathway signal sequence NMT1_3 PF16868.5 AHV93058.1 - 0.0036 16.8 0.1 0.0063 16.0 0.1 1.4 1 0 0 1 1 1 1 NMT1-like family TetR_C_30 PF17939.1 AHV93059.1 - 2.7e-26 92.1 1.3 5.1e-26 91.2 1.3 1.5 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_N PF00440.23 AHV93059.1 - 1.8e-17 62.8 0.2 3.9e-17 61.8 0.2 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family YjeF_N PF03853.15 AHV93059.1 - 0.18 11.7 0.0 0.25 11.2 0.0 1.2 1 0 0 1 1 1 0 YjeF-related protein N-terminus Glycos_transf_2 PF00535.26 AHV93060.1 - 8.2e-32 110.4 0.0 1.1e-31 109.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 AHV93060.1 - 1.5e-13 51.2 0.0 2.1e-13 50.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 AHV93060.1 - 1.7e-05 24.4 0.1 3.6e-05 23.3 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.9 AHV93060.1 - 0.00021 20.9 0.0 0.00029 20.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 AHV93060.1 - 0.036 14.6 0.0 0.088 13.3 0.0 1.6 1 1 0 1 1 1 0 Glycosyl transferase family 2 rve_3 PF13683.6 AHV93061.1 - 8.2e-32 108.8 0.1 4.5e-31 106.4 0.0 2.2 2 0 0 2 2 2 1 Integrase core domain rve PF00665.26 AHV93061.1 - 4.6e-25 88.1 0.0 1.1e-23 83.7 0.0 2.2 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 AHV93061.1 - 1.3e-10 41.2 8.7 2.7e-10 40.2 8.7 1.5 1 0 0 1 1 1 1 HTH-like domain rve_2 PF13333.6 AHV93061.1 - 4.6e-07 29.9 0.2 1.3e-06 28.5 0.0 1.8 2 0 0 2 2 2 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AHV93061.1 - 0.00041 20.6 0.0 0.00091 19.5 0.0 1.6 1 1 1 2 2 2 1 DDE domain Rhomboid_SP PF12595.8 AHV93061.1 - 0.0076 15.6 0.3 2.2 7.6 0.0 2.3 1 1 1 2 2 2 2 Rhomboid serine protease PS-DH PF14765.6 AHV93061.1 - 0.034 13.4 0.0 0.048 12.9 0.0 1.2 1 0 0 1 1 1 0 Polyketide synthase dehydratase Rotamase_3 PF13616.6 AHV93062.1 - 1.9e-24 86.4 0.1 4.7e-24 85.2 0.1 1.7 1 0 0 1 1 1 1 PPIC-type PPIASE domain Rotamase PF00639.21 AHV93062.1 - 8.3e-24 84.4 0.3 2.8e-23 82.7 0.0 2.1 2 1 0 2 2 2 1 PPIC-type PPIASE domain Rotamase_2 PF13145.6 AHV93062.1 - 7.4e-19 68.8 2.3 1.6e-18 67.7 2.3 1.5 1 0 0 1 1 1 1 PPIC-type PPIASE domain SurA_N_2 PF13623.6 AHV93062.1 - 1.5e-05 24.9 1.0 1.5e-05 24.9 1.0 2.2 2 1 1 3 3 3 1 SurA N-terminal domain SurA_N_3 PF13624.6 AHV93062.1 - 2.8e-05 24.0 2.1 2.8e-05 24.0 2.1 2.6 2 1 1 3 3 3 1 SurA N-terminal domain DUF4148 PF13663.6 AHV93062.1 - 0.036 14.3 3.4 0.12 12.6 0.1 3.0 3 1 0 3 3 3 0 Domain of unknown function (DUF4148) Lig_C PF18330.1 AHV93062.1 - 0.043 13.8 0.0 0.33 11.0 0.1 2.2 2 0 0 2 2 2 0 Ligase Pab1020 C-terminal region SurA_N PF09312.11 AHV93062.1 - 0.21 11.6 4.2 0.32 11.1 2.2 2.2 1 1 1 2 2 2 0 SurA N-terminal domain EamA PF00892.20 AHV93063.1 - 4.5e-21 75.5 30.7 2.5e-16 60.1 12.5 2.1 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.16 AHV93063.1 - 0.099 12.0 0.4 0.28 10.5 0.1 1.8 2 0 0 2 2 2 0 Triose-phosphate Transporter family Ntox10 PF15520.6 AHV93063.1 - 0.14 12.0 0.0 0.21 11.4 0.0 1.2 1 0 0 1 1 1 0 Novel toxin 10 Cupin_4 PF08007.12 AHV93064.1 - 1.4e-90 304.0 0.0 1.7e-90 303.8 0.0 1.0 1 0 0 1 1 1 1 Cupin superfamily protein AraC_binding PF02311.19 AHV93064.1 - 0.032 14.1 0.0 0.11 12.4 0.0 1.9 1 1 0 1 1 1 0 AraC-like ligand binding domain Cupin_2 PF07883.11 AHV93064.1 - 0.046 13.4 0.0 0.089 12.5 0.0 1.4 1 0 0 1 1 1 0 Cupin domain Cupin_8 PF13621.6 AHV93064.1 - 0.079 12.7 0.1 0.41 10.3 0.1 2.1 2 1 0 2 2 2 0 Cupin-like domain LysR_substrate PF03466.20 AHV93065.1 - 2.5e-40 138.1 9.8 3.7e-40 137.5 9.8 1.3 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 AHV93065.1 - 8.2e-21 73.7 0.2 4e-20 71.5 0.1 2.3 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family MarR_2 PF12802.7 AHV93065.1 - 0.013 15.4 4.5 3.2 7.7 0.0 4.4 4 1 0 4 4 4 0 MarR family PBP_like PF12727.7 AHV93065.1 - 0.014 14.5 0.0 0.017 14.3 0.0 1.2 1 0 0 1 1 1 0 PBP superfamily domain HTH_30 PF13556.6 AHV93065.1 - 0.04 13.7 0.1 0.18 11.6 0.0 2.1 1 1 1 2 2 2 0 PucR C-terminal helix-turn-helix domain PBP_like_2 PF12849.7 AHV93065.1 - 0.19 11.3 0.0 0.87 9.2 0.0 1.9 1 1 0 1 1 1 0 PBP superfamily domain APH PF01636.23 AHV93066.1 - 1.1e-30 107.3 0.5 1.7e-30 106.7 0.5 1.2 1 0 0 1 1 1 1 Phosphotransferase enzyme family Choline_kinase PF01633.20 AHV93066.1 - 9.4e-05 22.1 0.0 0.00014 21.5 0.0 1.2 1 0 0 1 1 1 1 Choline/ethanolamine kinase CHASE2 PF05226.11 AHV93067.1 - 1.5e-31 110.0 1.6 1.9e-31 109.7 1.6 1.0 1 0 0 1 1 1 1 CHASE2 domain FCD PF07729.12 AHV93068.1 - 1.7e-27 96.3 1.9 3.9e-27 95.1 1.9 1.6 1 0 0 1 1 1 1 FCD domain GntR PF00392.21 AHV93068.1 - 4.7e-19 67.8 0.5 1e-18 66.7 0.5 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family Fe_dep_repress PF01325.19 AHV93068.1 - 0.00056 20.0 0.0 0.00094 19.3 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.6 AHV93068.1 - 0.00093 19.6 0.8 0.0016 18.9 0.1 1.8 2 0 0 2 2 1 1 Winged helix DNA-binding domain HTH_5 PF01022.20 AHV93068.1 - 0.00097 19.0 0.1 0.0026 17.6 0.1 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 AHV93068.1 - 0.00097 18.7 0.1 0.0031 17.0 0.1 1.9 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_41 PF14502.6 AHV93068.1 - 0.0012 18.5 0.0 0.0023 17.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 AHV93068.1 - 0.003 17.4 1.0 0.0074 16.1 0.1 2.2 2 1 0 2 2 2 1 MarR family HTH_11 PF08279.12 AHV93068.1 - 0.004 17.1 0.1 0.0085 16.0 0.1 1.6 1 0 0 1 1 1 1 HTH domain HTH_IclR PF09339.10 AHV93068.1 - 0.006 16.3 0.4 0.018 14.8 0.1 2.1 2 0 0 2 2 1 1 IclR helix-turn-helix domain HTH_DeoR PF08220.12 AHV93068.1 - 0.0087 15.8 0.1 0.016 14.9 0.1 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_Crp_2 PF13545.6 AHV93068.1 - 0.015 15.2 0.2 0.034 14.1 0.2 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_28 PF13518.6 AHV93068.1 - 0.02 15.0 0.1 0.075 13.2 0.1 2.0 1 0 0 1 1 1 0 Helix-turn-helix domain HxlR PF01638.17 AHV93068.1 - 0.025 14.4 0.1 0.044 13.6 0.1 1.4 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_10 PF04967.12 AHV93068.1 - 0.026 14.3 0.2 0.17 11.7 0.0 2.4 2 1 0 2 2 2 0 HTH DNA binding domain TFIIE_alpha PF02002.17 AHV93068.1 - 0.029 14.2 0.0 0.058 13.3 0.0 1.5 1 0 0 1 1 1 0 TFIIE alpha subunit TrmB PF01978.19 AHV93068.1 - 0.03 14.2 0.0 0.066 13.1 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 AHV93068.1 - 0.047 13.8 0.8 0.047 13.8 0.8 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_Mga PF08280.11 AHV93068.1 - 0.048 13.7 0.2 0.13 12.4 0.2 1.6 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_17 PF12728.7 AHV93068.1 - 0.06 13.5 0.1 0.93 9.7 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain MarR PF01047.22 AHV93068.1 - 0.08 12.9 0.0 0.15 12.0 0.0 1.5 1 0 0 1 1 1 0 MarR family Rrf2 PF02082.20 AHV93068.1 - 0.11 12.9 0.1 0.28 11.5 0.0 1.7 2 0 0 2 2 2 0 Transcriptional regulator HTH_23 PF13384.6 AHV93068.1 - 0.27 11.1 0.1 0.27 11.1 0.1 2.3 3 0 0 3 3 3 0 Homeodomain-like domain RuvX PF03652.15 AHV93069.1 - 1e-34 119.8 0.0 1.3e-34 119.5 0.0 1.1 1 0 0 1 1 1 1 Holliday junction resolvase NlpE PF04170.12 AHV93070.1 - 0.00024 22.0 0.0 0.00055 20.8 0.0 1.6 2 0 0 2 2 2 1 NlpE N-terminal domain SMC_N PF02463.19 AHV93071.1 - 1.5e-19 70.4 0.0 2.5e-19 69.6 0.0 1.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 AHV93071.1 - 3e-14 54.0 0.0 8.5e-14 52.5 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_21 PF13304.6 AHV93071.1 - 3e-08 33.8 0.0 0.0068 16.3 0.0 2.4 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 AHV93071.1 - 4e-06 26.5 0.1 1.2e-05 25.0 0.1 1.9 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 AHV93071.1 - 0.0008 19.7 4.0 0.024 14.9 0.0 3.7 2 1 1 4 4 4 1 AAA domain ABC_tran PF00005.27 AHV93071.1 - 0.0056 17.2 1.7 0.51 10.8 0.0 3.6 2 1 0 2 2 2 1 ABC transporter Bap31_Bap29_C PF18035.1 AHV93071.1 - 0.013 15.5 4.5 0.14 12.2 0.3 3.3 3 0 0 3 3 3 0 Bap31/Bap29 cytoplasmic coiled-coil domain AAA_15 PF13175.6 AHV93071.1 - 0.041 13.6 0.0 0.094 12.4 0.0 1.6 2 0 0 2 2 2 0 AAA ATPase domain RsgA_GTPase PF03193.16 AHV93071.1 - 0.066 13.1 0.2 0.19 11.6 0.1 1.8 2 0 0 2 2 2 0 RsgA GTPase Spc7 PF08317.11 AHV93071.1 - 0.13 11.2 9.3 0.048 12.5 1.8 2.3 1 1 1 2 2 2 0 Spc7 kinetochore protein GAS PF13851.6 AHV93071.1 - 0.2 11.0 4.8 0.17 11.2 1.3 2.5 1 1 1 2 2 2 0 Growth-arrest specific micro-tubule binding AAA_10 PF12846.7 AHV93071.1 - 0.25 10.2 0.7 3 6.7 0.2 2.1 2 0 0 2 2 2 0 AAA-like domain Cep57_CLD_2 PF14197.6 AHV93071.1 - 2.4 8.3 15.6 1.7 8.8 2.7 4.3 1 1 1 3 3 3 0 Centrosome localisation domain of PPC89 ZapB PF06005.12 AHV93071.1 - 3.2 8.3 8.8 3 8.4 0.2 3.3 2 1 0 2 2 2 0 Cell division protein ZapB FAM184 PF15665.5 AHV93071.1 - 7.2 6.3 9.0 0.66 9.7 3.4 1.9 1 1 1 2 2 2 0 Family with sequence similarity 184, A and B PhoU PF01895.19 AHV93072.1 - 3.7e-38 129.9 11.2 4.8e-19 68.6 2.7 2.2 2 0 0 2 2 2 2 PhoU domain FlaF PF07309.11 AHV93072.1 - 0.0051 16.8 0.8 0.21 11.6 0.1 2.6 2 0 0 2 2 2 1 Flagellar protein FlaF Lectin_N PF03954.14 AHV93072.1 - 0.0095 15.7 0.1 0.017 14.8 0.1 1.3 1 0 0 1 1 1 1 Hepatic lectin, N-terminal domain FSIP1 PF15554.6 AHV93072.1 - 0.011 14.8 2.3 1.4 8.0 0.3 2.1 1 1 0 2 2 2 0 FSIP1 family TetR_C_15 PF17918.1 AHV93072.1 - 0.039 14.7 9.2 0.039 14.7 1.2 3.1 1 1 1 3 3 3 0 Tetracyclin repressor-like, C-terminal domain Transcrip_act PF04949.13 AHV93072.1 - 0.13 12.2 3.9 0.17 11.8 2.7 1.7 1 1 1 2 2 2 0 Transcriptional activator DUF1871 PF08958.10 AHV93072.1 - 0.15 12.4 0.0 14 6.1 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1871) PEP_mutase PF13714.6 AHV93073.1 - 8.4e-59 198.9 0.6 1.1e-58 198.6 0.6 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate phosphomutase ICL PF00463.21 AHV93073.1 - 1e-15 57.3 0.4 1.4e-15 56.8 0.4 1.1 1 0 0 1 1 1 1 Isocitrate lyase family DUF22 PF01629.16 AHV93073.1 - 0.094 12.4 0.0 1.1 9.0 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function DUF22 rve_3 PF13683.6 AHV93074.1 - 8.3e-32 108.8 0.1 4.5e-31 106.4 0.0 2.2 2 0 0 2 2 2 1 Integrase core domain rve PF00665.26 AHV93074.1 - 4.2e-25 88.2 0.0 1.1e-23 83.7 0.0 2.2 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 AHV93074.1 - 1.8e-11 44.0 8.6 3.6e-11 43.0 8.6 1.5 1 0 0 1 1 1 1 HTH-like domain rve_2 PF13333.6 AHV93074.1 - 5.8e-07 29.6 0.0 1.3e-06 28.5 0.0 1.6 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AHV93074.1 - 0.00041 20.6 0.0 0.00091 19.5 0.0 1.6 1 1 1 2 2 2 1 DDE domain Rhomboid_SP PF12595.8 AHV93074.1 - 0.0081 15.6 0.3 2.2 7.6 0.0 2.3 1 1 0 2 2 2 2 Rhomboid serine protease DUF1780 PF08682.10 AHV93074.1 - 0.13 11.9 1.0 1.6 8.3 0.3 2.2 2 0 0 2 2 2 0 Putative endonuclease, protein of unknown function (DUF1780) PS_Dcarbxylase PF02666.15 AHV93075.1 - 1.7e-62 210.5 0.0 2.1e-62 210.2 0.0 1.1 1 0 0 1 1 1 1 Phosphatidylserine decarboxylase PseudoU_synth_1 PF01416.20 AHV93076.1 - 0.00018 21.9 0.0 0.00021 21.7 0.0 1.0 1 0 0 1 1 1 1 tRNA pseudouridine synthase SDF PF00375.18 AHV93077.1 - 1.3e-109 366.8 31.4 1.4e-109 366.7 31.4 1.0 1 0 0 1 1 1 1 Sodium:dicarboxylate symporter family FAD-oxidase_C PF02913.19 AHV93079.1 - 2.7e-53 181.2 1.1 3.5e-53 180.8 0.3 1.6 2 0 0 2 2 2 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 AHV93079.1 - 1.7e-36 125.0 2.5 3.4e-36 124.0 2.5 1.5 1 0 0 1 1 1 1 FAD binding domain FAD_binding_5 PF00941.21 AHV93079.1 - 0.0099 15.6 0.8 0.046 13.5 0.3 2.2 2 1 0 2 2 2 1 FAD binding domain in molybdopterin dehydrogenase SBP_bac_5 PF00496.22 AHV93080.1 - 4.1e-93 312.3 8.5 5.1e-93 312.0 8.5 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle BPD_transp_1 PF00528.22 AHV93081.1 - 1.4e-24 86.8 18.2 1.4e-24 86.8 18.2 1.9 1 1 1 2 2 2 2 Binding-protein-dependent transport system inner membrane component FMN_red PF03358.15 AHV93082.1 - 3.6e-32 111.3 0.0 4.3e-32 111.0 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 AHV93082.1 - 7.1e-06 25.9 0.1 1.1e-05 25.2 0.1 1.5 1 1 0 1 1 1 1 Flavodoxin-like fold DUF1993 PF09351.10 AHV93084.1 - 2.4e-57 193.6 0.0 2.6e-57 193.4 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1993) AAA_27 PF13514.6 AHV93085.1 - 5.1e-06 26.2 0.1 5.1e-06 26.2 0.1 3.8 2 1 1 3 3 3 1 AAA domain SMC_N PF02463.19 AHV93085.1 - 2.8e-05 23.7 0.0 5.8e-05 22.6 0.0 1.5 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 AHV93085.1 - 0.00023 21.7 19.7 0.028 14.9 19.7 3.0 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 AHV93085.1 - 0.00042 20.1 0.0 0.00069 19.4 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain V_ATPase_I PF01496.19 AHV93085.1 - 8.1 4.2 6.8 11 3.8 6.8 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family BPD_transp_2 PF02653.16 AHV93087.1 - 2.3e-35 122.1 47.5 3e-35 121.7 47.5 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component ThiW PF09512.10 AHV93087.1 - 0.00026 21.1 30.5 0.0066 16.6 15.7 2.4 2 0 0 2 2 2 2 Thiamine-precursor transporter protein (ThiW) DUF465 PF04325.13 AHV93088.1 - 2.1e-18 66.1 6.1 4.2e-18 65.1 3.6 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF465) CMS1 PF14617.6 AHV93088.1 - 0.0016 17.8 0.2 0.0018 17.7 0.2 1.0 1 0 0 1 1 1 1 U3-containing 90S pre-ribosomal complex subunit TMEM51 PF15345.6 AHV93088.1 - 0.094 12.5 0.1 0.096 12.5 0.1 1.1 1 0 0 1 1 1 0 Transmembrane protein 51 FXMRP1_C_core PF12235.8 AHV93088.1 - 0.19 12.4 1.1 1.2 9.7 0.4 2.0 2 0 0 2 2 2 0 Fragile X-related 1 protein core C terminal Peripla_BP_6 PF13458.6 AHV93089.1 - 8.3e-63 213.1 10.1 1e-62 212.8 10.1 1.0 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.28 AHV93089.1 - 5.5e-29 101.4 0.0 9.1e-29 100.7 0.0 1.2 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.6 AHV93089.1 - 1e-23 83.9 0.7 3e-23 82.4 0.7 1.6 1 1 0 1 1 1 1 Periplasmic binding protein domain Peripla_BP_3 PF13377.6 AHV93089.1 - 0.094 13.0 0.0 0.22 11.8 0.0 1.6 1 0 0 1 1 1 0 Periplasmic binding protein-like domain SRP54 PF00448.22 AHV93090.1 - 8.1e-69 231.2 0.1 1.5e-68 230.3 0.1 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.19 AHV93090.1 - 6e-30 103.8 0.4 6e-30 103.8 0.4 2.3 3 0 0 3 3 2 1 Signal peptide binding domain SRP54_N PF02881.19 AHV93090.1 - 2.7e-19 69.2 0.4 9.2e-19 67.5 0.4 2.0 1 0 0 1 1 1 1 SRP54-type protein, helical bundle domain AAA_22 PF13401.6 AHV93090.1 - 6.6e-07 29.7 0.0 2.5e-06 27.8 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.6 AHV93090.1 - 8.3e-05 22.2 0.5 8.3e-05 22.2 0.5 2.4 2 1 0 2 2 2 1 AAA domain CbiA PF01656.23 AHV93090.1 - 0.00015 21.8 0.0 0.0027 17.8 0.0 2.7 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain Zeta_toxin PF06414.12 AHV93090.1 - 0.00064 19.0 0.8 0.0017 17.6 0.2 2.0 2 1 0 2 2 2 1 Zeta toxin NTPase_1 PF03266.15 AHV93090.1 - 0.051 13.5 2.8 0.64 9.9 1.4 3.0 2 1 0 2 2 2 0 NTPase AAA_31 PF13614.6 AHV93090.1 - 0.081 12.8 0.5 4.6 7.1 0.6 2.7 1 1 0 2 2 2 0 AAA domain ABC_tran PF00005.27 AHV93090.1 - 0.092 13.3 0.1 0.6 10.6 0.0 2.2 2 0 0 2 2 2 0 ABC transporter AAA_24 PF13479.6 AHV93090.1 - 0.11 12.1 0.0 0.26 11.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 AHV93090.1 - 0.14 12.2 0.5 1.6 8.8 0.2 2.8 2 1 0 2 2 2 0 50S ribosome-binding GTPase cobW PF02492.19 AHV93090.1 - 0.17 11.5 0.5 1.1 8.8 0.5 2.1 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain ArsA_ATPase PF02374.15 AHV93090.1 - 0.17 11.0 5.7 1.1 8.4 0.4 3.3 3 0 0 3 3 3 0 Anion-transporting ATPase 6PF2K PF01591.18 AHV93090.1 - 0.19 11.0 0.0 0.35 10.1 0.0 1.3 1 0 0 1 1 1 0 6-phosphofructo-2-kinase AAA_33 PF13671.6 AHV93090.1 - 0.2 11.8 2.2 0.25 11.5 0.7 2.0 2 1 0 2 2 2 0 AAA domain Mlf1IP PF10248.9 AHV93090.1 - 1.5 8.8 5.4 9.8 6.1 5.7 2.0 1 1 1 2 2 2 0 Myelodysplasia-myeloid leukemia factor 1-interacting protein rve PF00665.26 AHV93091.1 - 9.1e-36 122.7 0.2 2.4e-35 121.3 0.1 1.7 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 AHV93091.1 - 5.9e-14 51.9 1.5 4.2e-13 49.2 1.0 2.4 2 0 0 2 2 2 1 HTH-like domain rve_2 PF13333.6 AHV93091.1 - 2.7e-12 46.7 0.9 4.2e-12 46.0 0.9 1.3 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.6 AHV93091.1 - 2.1e-11 43.4 0.2 4e-11 42.5 0.2 1.5 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AHV93091.1 - 1.2e-07 32.1 0.2 1.6e-07 31.6 0.2 1.2 1 0 0 1 1 1 1 DDE domain HTH_Tnp_1 PF01527.20 AHV93091.1 - 0.0021 18.3 0.4 0.0072 16.6 0.0 2.0 2 0 0 2 2 2 1 Transposase Aldedh PF00171.22 AHV93092.1 - 2.7e-153 510.8 0.0 3e-153 510.6 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family TonB_dep_Rec PF00593.24 AHV93093.1 - 3.1e-49 169.1 30.7 3.1e-49 169.1 30.7 1.7 1 1 1 2 2 2 1 TonB dependent receptor Plug PF07715.15 AHV93093.1 - 3.2e-22 79.1 0.6 6.3e-22 78.2 0.6 1.5 1 0 0 1 1 1 1 TonB-dependent Receptor Plug Domain OMP_b-brl_3 PF14905.6 AHV93093.1 - 6.9e-06 25.3 0.3 0.066 12.2 0.3 2.5 2 1 0 2 2 2 2 Outer membrane protein beta-barrel family adh_short_C2 PF13561.6 AHV93094.1 - 7.1e-56 189.4 0.0 7.9e-56 189.2 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 AHV93094.1 - 1.8e-07 30.8 0.0 2.5e-07 30.4 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase Peptidase_S13 PF02113.15 AHV93095.1 - 1.5e-80 271.1 0.0 1.8e-80 270.8 0.0 1.1 1 0 0 1 1 1 1 D-Ala-D-Ala carboxypeptidase 3 (S13) family Beta-lactamase2 PF13354.6 AHV93095.1 - 0.002 17.8 0.1 0.15 11.7 0.1 2.7 3 0 0 3 3 3 2 Beta-lactamase enzyme family DapB_C PF05173.14 AHV93096.1 - 9.2e-43 145.1 0.0 1.3e-42 144.7 0.0 1.2 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, C-terminus DapB_N PF01113.20 AHV93096.1 - 3e-38 130.8 0.1 4.9e-38 130.1 0.1 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Semialdhyde_dh PF01118.24 AHV93096.1 - 0.011 16.1 0.0 0.023 15.1 0.0 1.5 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain CoA_binding_2 PF13380.6 AHV93096.1 - 0.026 15.0 0.0 0.057 13.9 0.0 1.6 1 1 0 1 1 1 0 CoA binding domain Sacchrp_dh_NADP PF03435.18 AHV93096.1 - 0.1 12.9 0.1 0.26 11.5 0.1 1.7 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain DUF3377 PF11857.8 AHV93097.1 - 0.18 11.8 0.4 0.63 10.0 0.4 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF3377) adh_short_C2 PF13561.6 AHV93098.1 - 0.0035 16.9 0.2 0.02 14.5 0.0 2.1 1 1 0 2 2 2 1 Enoyl-(Acyl carrier protein) reductase TetR_N PF00440.23 AHV93099.1 - 2e-14 53.1 0.7 3.9e-14 52.2 0.7 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_29 PF17938.1 AHV93099.1 - 1.2e-07 31.8 0.0 2.6e-07 30.7 0.0 1.6 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_11 PF16859.5 AHV93099.1 - 0.00018 21.8 1.9 0.00018 21.8 1.9 2.5 2 1 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_21 PF17926.1 AHV93099.1 - 0.0061 16.7 0.3 0.015 15.4 0.0 1.8 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain Homeodomain PF00046.29 AHV93099.1 - 0.024 14.5 0.0 0.049 13.5 0.0 1.5 1 0 0 1 1 1 0 Homeodomain HPTransfase PF10090.9 AHV93099.1 - 0.089 12.6 1.6 0.21 11.4 0.8 1.9 2 0 0 2 2 2 0 Histidine phosphotransferase C-terminal domain TetR_C_9 PF14514.6 AHV93099.1 - 0.093 12.9 0.0 0.17 12.0 0.0 1.4 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain TetR_C_15 PF17918.1 AHV93099.1 - 4.6 8.0 9.3 2.6 8.9 0.5 2.6 3 0 0 3 3 3 0 Tetracyclin repressor-like, C-terminal domain TctC PF03401.14 AHV93101.1 - 0.0041 16.2 0.0 0.0043 16.1 0.0 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor MbeB_N PF04837.12 AHV93101.1 - 0.034 14.5 1.2 0.21 11.9 0.4 2.1 2 0 0 2 2 2 0 MbeB-like, N-term conserved region Arg_decarbox_C PF17944.1 AHV93101.1 - 0.041 14.4 0.3 0.08 13.5 0.3 1.5 1 0 0 1 1 1 0 Arginine decarboxylase C-terminal helical extension TetR_C_24 PF17932.1 AHV93101.1 - 0.072 13.4 1.0 0.09 13.0 1.0 1.1 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain Methyltransf_14 PF08484.11 AHV93101.1 - 0.18 11.6 0.4 0.21 11.4 0.4 1.1 1 0 0 1 1 1 0 C-methyltransferase C-terminal domain HTH_3 PF01381.22 AHV93102.1 - 4.1e-10 39.6 0.0 6.5e-10 38.9 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 AHV93102.1 - 5.3e-10 39.5 0.9 6.5e-10 39.2 0.9 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain MqsA_antitoxin PF15731.5 AHV93102.1 - 9.5e-07 29.0 0.0 1.1e-06 28.8 0.0 1.0 1 0 0 1 1 1 1 Antitoxin component of bacterial toxin-antitoxin system, MqsA HTH_23 PF13384.6 AHV93102.1 - 0.00024 20.8 0.0 0.00047 19.9 0.0 1.7 1 1 0 1 1 1 1 Homeodomain-like domain MerR PF00376.23 AHV93102.1 - 0.00085 19.1 0.0 0.0028 17.4 0.0 2.0 2 1 0 2 2 2 1 MerR family regulatory protein HTH_28 PF13518.6 AHV93102.1 - 0.0012 18.9 0.0 0.0024 18.0 0.0 1.6 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_17 PF12728.7 AHV93102.1 - 0.0039 17.3 0.0 0.013 15.7 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_19 PF12844.7 AHV93102.1 - 0.015 15.3 0.0 0.02 14.9 0.0 1.1 1 0 0 1 1 1 0 Helix-turn-helix domain MerR_1 PF13411.6 AHV93102.1 - 0.03 14.4 0.0 0.058 13.5 0.0 1.6 1 1 0 1 1 1 0 MerR HTH family regulatory protein YdaS_antitoxin PF15943.5 AHV93102.1 - 0.032 14.1 0.3 0.045 13.6 0.0 1.5 2 0 0 2 2 2 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_25 PF13413.6 AHV93102.1 - 0.084 12.7 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 AHV93102.1 - 0.13 11.9 0.0 0.37 10.5 0.0 1.8 1 1 1 2 2 2 0 Sigma-70, region 4 Molybdopterin PF00384.22 AHV93103.1 - 3e-28 99.0 0.0 4.9e-22 78.5 0.0 2.7 2 1 0 2 2 2 2 Molybdopterin oxidoreductase Molydop_binding PF01568.21 AHV93103.1 - 3e-16 59.4 0.0 8.9e-16 57.9 0.0 1.8 1 1 0 1 1 1 1 Molydopterin dinucleotide binding domain FAD_binding_3 PF01494.19 AHV93105.1 - 2.3e-23 83.0 0.2 4.1e-23 82.2 0.2 1.4 1 1 0 1 1 1 1 FAD binding domain DAO PF01266.24 AHV93105.1 - 3.3e-06 26.9 4.9 3.3e-06 26.9 4.9 1.8 2 1 0 2 2 2 1 FAD dependent oxidoreductase SE PF08491.10 AHV93105.1 - 1.8e-05 24.0 0.0 4.7e-05 22.6 0.0 1.6 2 0 0 2 2 2 1 Squalene epoxidase Trp_halogenase PF04820.14 AHV93105.1 - 0.00037 19.5 1.3 0.013 14.4 0.1 2.1 2 0 0 2 2 2 1 Tryptophan halogenase Pyr_redox_2 PF07992.14 AHV93105.1 - 0.0021 17.4 0.0 0.0048 16.2 0.0 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.18 AHV93105.1 - 0.0042 17.3 0.0 0.0081 16.4 0.0 1.4 1 0 0 1 1 1 1 TrkA-N domain FAD_binding_2 PF00890.24 AHV93105.1 - 0.0063 15.6 1.4 0.013 14.6 1.4 1.5 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.6 AHV93105.1 - 0.012 15.8 0.3 0.029 14.6 0.3 1.6 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 AHV93105.1 - 0.017 15.6 0.0 0.039 14.5 0.0 1.6 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.6 AHV93105.1 - 0.097 13.1 0.0 0.17 12.3 0.0 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding Thi4 PF01946.17 AHV93105.1 - 0.1 11.8 0.1 0.15 11.2 0.1 1.2 1 0 0 1 1 1 0 Thi4 family UDPG_MGDP_dh_N PF03721.14 AHV93105.1 - 0.17 11.4 0.1 0.3 10.7 0.1 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Hpt PF01627.23 AHV93105.1 - 1.6 9.0 6.9 2.1 8.6 2.1 3.0 3 1 0 3 3 3 0 Hpt domain Amidohydro_1 PF01979.20 AHV93106.1 - 1.1e-20 74.2 0.0 1.8e-19 70.3 0.0 2.1 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 AHV93106.1 - 1.3e-17 64.4 0.4 3.7e-11 43.2 0.1 2.2 2 0 0 2 2 2 2 Amidohydrolase family NAD_binding_1 PF00175.21 AHV93107.1 - 3.2e-22 79.2 0.0 4.9e-22 78.6 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain Fer2 PF00111.27 AHV93107.1 - 5.7e-17 61.4 0.1 1.1e-16 60.6 0.1 1.5 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain FAD_binding_6 PF00970.24 AHV93107.1 - 1.6e-13 50.9 0.0 3.2e-13 49.9 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain Fer2_4 PF13510.6 AHV93107.1 - 7.3e-05 22.7 0.0 0.00018 21.5 0.0 1.7 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain ABC_tran PF00005.27 AHV93108.1 - 1.7e-43 148.4 0.0 2.9e-21 76.4 0.0 2.8 3 0 0 3 3 2 2 ABC transporter ABC_tran_Xtn PF12848.7 AHV93108.1 - 4.2e-21 74.8 2.1 9.4e-19 67.2 1.3 2.4 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 AHV93108.1 - 1.9e-15 57.5 15.9 0.00034 20.5 0.0 5.1 4 1 0 5 5 5 4 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 AHV93108.1 - 6.2e-09 35.6 2.5 0.6 9.5 0.0 4.2 3 1 1 4 4 4 3 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 AHV93108.1 - 2.1e-07 30.6 0.3 0.016 14.9 0.1 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain RNA_helicase PF00910.22 AHV93108.1 - 3.8e-07 30.5 0.0 0.0013 19.1 0.0 2.7 2 0 0 2 2 2 2 RNA helicase AAA_16 PF13191.6 AHV93108.1 - 3.8e-06 27.4 0.0 0.00021 21.7 0.0 2.6 2 0 0 2 2 2 1 AAA ATPase domain AAA_28 PF13521.6 AHV93108.1 - 7.7e-06 26.2 0.1 0.0019 18.5 0.0 2.9 2 1 0 2 2 2 1 AAA domain AAA_15 PF13175.6 AHV93108.1 - 8.7e-06 25.7 2.9 0.086 12.5 0.3 2.8 3 0 0 3 3 3 2 AAA ATPase domain NACHT PF05729.12 AHV93108.1 - 2e-05 24.6 0.7 0.013 15.4 0.0 2.5 2 0 0 2 2 2 1 NACHT domain AAA_18 PF13238.6 AHV93108.1 - 3.3e-05 24.4 0.0 0.021 15.4 0.0 2.8 2 0 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 AHV93108.1 - 4.9e-05 23.3 0.1 0.052 13.4 0.0 2.4 2 0 0 2 2 2 2 RsgA GTPase AAA_24 PF13479.6 AHV93108.1 - 7.2e-05 22.6 0.3 0.19 11.4 0.0 2.9 3 0 0 3 3 2 2 AAA domain MMR_HSR1 PF01926.23 AHV93108.1 - 0.00015 21.8 0.0 0.17 11.9 0.0 2.8 2 0 0 2 2 2 1 50S ribosome-binding GTPase AAA_33 PF13671.6 AHV93108.1 - 0.00029 21.0 0.1 1.6 8.9 0.0 3.3 3 0 0 3 3 3 1 AAA domain AAA_25 PF13481.6 AHV93108.1 - 0.00033 20.3 0.1 0.018 14.7 0.0 2.9 3 0 0 3 3 3 1 AAA domain MeaB PF03308.16 AHV93108.1 - 0.00039 19.5 1.6 0.065 12.2 0.0 2.8 3 0 0 3 3 3 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_22 PF13401.6 AHV93108.1 - 0.0006 20.1 2.6 0.048 13.9 0.1 3.4 3 1 0 3 3 3 1 AAA domain AAA PF00004.29 AHV93108.1 - 0.00068 20.1 0.0 0.27 11.7 0.0 3.0 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) FtsK_SpoIIIE PF01580.18 AHV93108.1 - 0.00072 19.0 0.4 0.17 11.2 0.0 2.5 3 0 0 3 3 2 1 FtsK/SpoIIIE family AAA_14 PF13173.6 AHV93108.1 - 0.00083 19.4 0.0 0.23 11.5 0.0 3.6 4 0 0 4 4 3 1 AAA domain AAA_30 PF13604.6 AHV93108.1 - 0.001 18.8 0.4 0.41 10.3 0.0 2.9 3 0 0 3 3 3 1 AAA domain DUF87 PF01935.17 AHV93108.1 - 0.0018 18.4 4.0 0.4 10.7 0.0 3.6 2 1 2 4 4 4 1 Helicase HerA, central domain ATP-synt_ab PF00006.25 AHV93108.1 - 0.0039 16.9 0.0 0.61 9.7 0.0 2.3 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_23 PF13476.6 AHV93108.1 - 0.0058 17.2 13.6 0.15 12.5 0.2 3.1 2 1 1 3 3 3 2 AAA domain Roc PF08477.13 AHV93108.1 - 0.01 16.1 0.6 0.19 11.9 0.1 2.8 2 1 0 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase TsaE PF02367.17 AHV93108.1 - 0.013 15.5 0.1 1.7 8.6 0.0 2.5 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE NTPase_1 PF03266.15 AHV93108.1 - 0.018 14.9 0.4 2 8.3 0.1 2.9 3 0 0 3 3 2 0 NTPase IstB_IS21 PF01695.17 AHV93108.1 - 0.019 14.7 2.3 0.048 13.4 0.0 2.7 3 1 0 3 3 3 0 IstB-like ATP binding protein DUF3584 PF12128.8 AHV93108.1 - 0.025 12.1 0.1 0.025 12.1 0.1 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF3584) GcpE PF04551.14 AHV93108.1 - 0.05 12.7 0.0 0.084 11.9 0.0 1.3 1 0 0 1 1 1 0 GcpE protein ThrE PF06738.12 AHV93108.1 - 0.066 12.6 0.2 0.11 11.8 0.2 1.3 1 0 0 1 1 1 0 Putative threonine/serine exporter SRP54 PF00448.22 AHV93108.1 - 0.077 12.6 0.3 1 9.0 0.0 2.3 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_5 PF07728.14 AHV93108.1 - 0.095 12.7 0.2 4 7.4 0.0 2.7 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) RuvB_N PF05496.12 AHV93108.1 - 0.096 12.4 0.1 3.4 7.4 0.0 2.7 3 0 0 3 3 2 0 Holliday junction DNA helicase RuvB P-loop domain KAP_NTPase PF07693.14 AHV93108.1 - 0.097 11.9 0.2 11 5.1 0.0 2.7 2 1 1 3 3 3 0 KAP family P-loop domain NB-ARC PF00931.22 AHV93108.1 - 0.099 11.8 1.5 1.4 8.0 0.0 2.5 2 1 0 2 2 2 0 NB-ARC domain ATP_bind_1 PF03029.17 AHV93108.1 - 0.1 12.4 0.3 8.5 6.1 0.1 2.5 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_7 PF12775.7 AHV93108.1 - 0.12 11.9 0.1 2 7.9 0.0 2.2 2 0 0 2 2 2 0 P-loop containing dynein motor region MukB PF04310.12 AHV93108.1 - 0.14 12.0 2.8 1.7 8.4 0.0 2.6 3 0 0 3 3 2 0 MukB N-terminal Thymidylate_kin PF02223.17 AHV93108.1 - 0.15 11.8 1.0 13 5.4 0.0 2.7 3 0 0 3 3 2 0 Thymidylate kinase MobB PF03205.14 AHV93108.1 - 0.18 11.7 0.5 2.8 7.8 0.0 2.6 2 1 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_13 PF13166.6 AHV93108.1 - 0.51 8.9 6.8 3 6.4 0.0 3.0 2 1 1 3 3 3 0 AAA domain PepSY_TM PF03929.16 AHV93109.1 - 1.5e-50 172.5 7.7 1.7e-50 172.3 7.7 1.0 1 0 0 1 1 1 1 PepSY-associated TM region DUF4405 PF14358.6 AHV93109.1 - 0.0002 21.9 2.2 0.0097 16.4 0.3 2.8 2 1 1 3 3 3 1 Domain of unknown function (DUF4405) PepSY PF03413.19 AHV93109.1 - 0.0076 16.8 0.0 0.03 14.9 0.0 1.9 2 0 0 2 2 2 1 Peptidase propeptide and YPEB domain Abhydrolase_1 PF00561.20 AHV93111.1 - 3.7e-17 62.8 0.1 3.7e-14 53.0 0.0 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 AHV93111.1 - 1.6e-15 58.3 11.5 2e-15 58.0 11.5 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 AHV93111.1 - 9.1e-12 44.7 0.1 2.6e-10 40.0 0.1 2.1 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Esterase PF00756.20 AHV93111.1 - 1.4e-06 28.2 0.0 1.7e-06 27.9 0.0 1.3 1 0 0 1 1 1 1 Putative esterase Ndr PF03096.14 AHV93111.1 - 0.002 16.9 0.0 1.3 7.6 0.0 2.1 2 0 0 2 2 2 2 Ndr family AXE1 PF05448.12 AHV93111.1 - 0.0022 16.7 0.0 0.003 16.3 0.0 1.1 1 0 0 1 1 1 1 Acetyl xylan esterase (AXE1) Thioesterase PF00975.20 AHV93111.1 - 0.0025 18.0 0.2 0.0056 16.8 0.1 1.5 1 1 0 1 1 1 1 Thioesterase domain Abhydrolase_3 PF07859.13 AHV93111.1 - 0.017 15.0 0.3 0.038 13.8 0.3 1.5 1 1 0 1 1 1 0 alpha/beta hydrolase fold DUF1057 PF06342.12 AHV93111.1 - 0.036 13.1 0.0 0.05 12.6 0.0 1.1 1 0 0 1 1 1 0 Alpha/beta hydrolase of unknown function (DUF1057) Abhydrolase_2 PF02230.16 AHV93111.1 - 0.038 13.8 0.0 0.7 9.7 0.0 2.1 2 0 0 2 2 2 0 Phospholipase/Carboxylesterase DUF2974 PF11187.8 AHV93111.1 - 0.13 11.8 0.0 0.18 11.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2974) Peptidase_S9 PF00326.21 AHV93111.1 - 0.16 11.4 0.0 0.64 9.5 0.0 1.9 1 1 0 1 1 1 0 Prolyl oligopeptidase family Formyl_trans_N PF00551.19 AHV93112.1 - 6.5e-39 133.5 0.2 7.5e-39 133.3 0.2 1.0 1 0 0 1 1 1 1 Formyl transferase FGGY_N PF00370.21 AHV93113.1 - 2e-74 250.3 0.0 2.4e-74 250.0 0.0 1.0 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain BcrAD_BadFG PF01869.20 AHV93113.1 - 0.088 12.3 0.0 0.1 12.0 0.0 1.2 1 0 0 1 1 1 0 BadF/BadG/BcrA/BcrD ATPase family PDH_E1_M PF17831.1 AHV93114.1 - 9.9e-102 339.4 0.0 1.6e-101 338.7 0.0 1.3 1 0 0 1 1 1 1 Pyruvate dehydrogenase E1 component middle domain Transketolase_N PF00456.21 AHV93114.1 - 1.2e-11 44.1 0.0 4.4e-07 29.2 0.0 2.2 2 0 0 2 2 2 2 Transketolase, thiamine diphosphate binding domain Transketolase_C PF02780.20 AHV93114.1 - 0.0034 17.3 0.1 0.019 14.8 0.0 2.3 2 1 1 3 3 3 1 Transketolase, C-terminal domain CPSase_sm_chain PF00988.22 AHV93115.1 - 6.3e-51 171.5 0.0 9.2e-51 171.0 0.0 1.2 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.28 AHV93115.1 - 4e-44 150.7 0.0 5.7e-44 150.2 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 AHV93115.1 - 2.5e-07 30.7 0.1 1.1e-06 28.6 0.1 2.1 1 1 1 2 2 2 1 Peptidase C26 MCPsignal PF00015.21 AHV93116.1 - 8.8e-48 162.4 33.5 9.2e-48 162.3 21.1 2.9 3 0 0 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain TarH PF02203.15 AHV93116.1 - 1.6e-14 54.2 8.0 1.6e-14 54.2 8.0 3.3 3 1 1 4 4 4 1 Tar ligand binding domain homologue HAMP PF00672.25 AHV93116.1 - 1.6e-07 31.6 3.0 3.6e-07 30.5 0.3 3.2 3 0 0 3 3 3 1 HAMP domain Terpene_synth_C PF03936.16 AHV93116.1 - 0.087 12.1 0.9 0.18 11.1 0.9 1.5 1 0 0 1 1 1 0 Terpene synthase family, metal binding domain DUF1664 PF07889.12 AHV93116.1 - 0.17 11.9 5.0 10 6.2 1.3 3.4 2 1 1 3 3 3 0 Protein of unknown function (DUF1664) Atg14 PF10186.9 AHV93116.1 - 0.54 9.3 1.8 1.1 8.3 1.8 1.4 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 Nup54 PF13874.6 AHV93116.1 - 1 9.5 8.5 3.1 7.9 0.1 3.3 2 1 0 2 2 2 0 Nucleoporin complex subunit 54 Autotransporter PF03797.19 AHV93117.1 - 4.1e-38 131.5 10.3 4.1e-38 131.5 10.3 1.6 2 0 0 2 2 2 1 Autotransporter beta-domain Pertactin PF03212.14 AHV93117.1 - 0.00012 22.0 0.1 0.00034 20.6 0.1 1.8 2 0 0 2 2 2 1 Pertactin DXP_reductoisom PF02670.16 AHV93118.1 - 1.3e-39 135.8 0.5 2.3e-39 135.1 0.5 1.4 1 0 0 1 1 1 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase DXPR_C PF13288.6 AHV93118.1 - 5.6e-39 133.0 0.0 2e-38 131.2 0.0 1.9 2 0 0 2 2 2 1 DXP reductoisomerase C-terminal domain DXP_redisom_C PF08436.12 AHV93118.1 - 5.5e-38 129.0 0.0 1.1e-37 128.1 0.0 1.5 1 0 0 1 1 1 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain FAD_binding_2 PF00890.24 AHV93118.1 - 0.001 18.3 1.1 0.0021 17.2 1.1 1.5 1 0 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.7 AHV93118.1 - 0.075 12.4 2.7 0.15 11.4 2.7 1.4 1 0 0 1 1 1 0 FAD dependent oxidoreductase GIDA PF01134.22 AHV93118.1 - 1.7 7.7 2.9 2.5 7.1 2.9 1.1 1 0 0 1 1 1 0 Glucose inhibited division protein A SNARE_assoc PF09335.11 AHV93119.1 - 1.1e-14 55.0 6.5 1.1e-14 55.0 6.5 1.9 2 0 0 2 2 2 1 SNARE associated Golgi protein DUF2198 PF09964.9 AHV93119.1 - 0.017 15.2 0.1 0.18 11.9 0.0 2.3 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2198) UPF0016 PF01169.19 AHV93119.1 - 0.027 14.8 9.2 1.7 9.1 0.1 3.3 1 1 1 3 3 3 0 Uncharacterized protein family UPF0016 Acetyltransf_1 PF00583.25 AHV93120.1 - 1.5e-12 47.8 0.0 1.8e-12 47.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 AHV93120.1 - 2.7e-10 40.3 0.0 3.5e-10 39.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 AHV93120.1 - 4.6e-09 36.1 0.0 1.2e-08 34.8 0.0 1.6 1 1 0 1 1 1 1 FR47-like protein Acetyltransf_7 PF13508.7 AHV93120.1 - 2.2e-08 34.4 0.1 3.9e-08 33.6 0.1 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 AHV93120.1 - 0.00073 19.6 0.0 0.0013 18.8 0.0 1.5 1 1 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.7 AHV93120.1 - 0.0018 18.9 0.0 0.0022 18.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 AHV93120.1 - 0.012 15.7 0.0 0.032 14.3 0.0 1.6 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain HhH-GPD PF00730.25 AHV93121.1 - 8.2e-19 68.1 0.0 1.3e-18 67.4 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 AHV93121.1 - 1.7e-09 37.1 0.0 3.5e-09 36.1 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.9 AHV93121.1 - 5.9e-05 23.3 5.7 9.1e-05 22.7 5.7 1.3 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III DUF2378 PF09536.10 AHV93121.1 - 0.075 12.9 0.0 0.43 10.4 0.0 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF2378) HHH_5 PF14520.6 AHV93121.1 - 0.14 12.8 0.0 0.24 12.0 0.0 1.4 1 0 0 1 1 1 0 Helix-hairpin-helix domain Aconitase_C PF00694.19 AHV93122.1 - 4.3e-37 127.4 0.0 5.5e-37 127.0 0.0 1.1 1 0 0 1 1 1 1 Aconitase C-terminal domain Coprogen_oxidas PF01218.18 AHV93123.1 - 6.3e-50 169.6 0.0 6.9e-50 169.4 0.0 1.0 1 0 0 1 1 1 1 Coproporphyrinogen III oxidase ABC_tran PF00005.27 AHV93124.1 - 1.4e-57 194.0 0.0 1.4e-27 96.8 0.0 2.2 2 0 0 2 2 2 2 ABC transporter ABC2_membrane_3 PF12698.7 AHV93124.1 - 2.5e-37 128.8 4.7 3.2e-37 128.4 4.7 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein AAA_21 PF13304.6 AHV93124.1 - 1.1e-17 64.8 3.4 7.5e-06 26.0 0.0 4.2 3 1 1 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system ABC2_membrane_2 PF12679.7 AHV93124.1 - 2.4e-17 63.2 9.7 3.4e-17 62.7 9.7 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 AHV93124.1 - 1.6e-16 60.4 16.6 7.7e-16 58.1 14.5 2.2 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_4 PF12730.7 AHV93124.1 - 3.2e-05 24.0 12.4 7.4e-05 22.8 12.4 1.6 1 0 0 1 1 1 1 ABC-2 family transporter protein AAA_16 PF13191.6 AHV93124.1 - 3.6e-05 24.2 0.1 0.018 15.4 0.0 2.7 2 1 0 2 2 2 1 AAA ATPase domain RsgA_GTPase PF03193.16 AHV93124.1 - 7e-05 22.8 0.0 0.089 12.7 0.0 2.3 2 0 0 2 2 2 2 RsgA GTPase AAA_15 PF13175.6 AHV93124.1 - 0.00011 22.1 0.0 2 8.1 0.0 3.2 3 0 0 3 3 3 2 AAA ATPase domain AAA_29 PF13555.6 AHV93124.1 - 0.00012 21.7 0.1 0.67 9.7 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain SbcCD_C PF13558.6 AHV93124.1 - 0.0004 20.6 0.1 5.1 7.4 0.0 4.2 3 1 0 3 3 3 1 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.6 AHV93124.1 - 0.00077 20.0 0.0 0.23 11.9 0.1 2.2 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 AHV93124.1 - 0.0009 19.5 0.1 1.7 8.9 0.0 3.2 2 1 0 2 2 2 1 AAA domain SMC_N PF02463.19 AHV93124.1 - 0.011 15.2 0.4 18 4.7 0.0 3.3 3 0 0 3 3 3 0 RecF/RecN/SMC N terminal domain MMR_HSR1 PF01926.23 AHV93124.1 - 0.013 15.5 0.1 1.9 8.6 0.1 2.5 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA PF00004.29 AHV93124.1 - 0.018 15.5 0.4 2.1 8.8 0.0 2.9 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.17 AHV93124.1 - 0.024 14.4 0.7 2.7 7.7 0.0 3.4 4 0 0 4 4 4 0 IstB-like ATP binding protein AAA_5 PF07728.14 AHV93124.1 - 0.028 14.4 0.1 8.5 6.4 0.0 2.5 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Rad17 PF03215.15 AHV93124.1 - 0.066 13.1 0.0 0.77 9.6 0.0 2.1 2 0 0 2 2 2 0 Rad17 P-loop domain AAA_30 PF13604.6 AHV93124.1 - 0.07 12.8 0.2 13 5.4 0.1 2.6 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 AHV93124.1 - 0.11 12.9 0.1 4.7 7.6 0.0 2.4 2 0 0 2 2 2 0 RNA helicase AAA_28 PF13521.6 AHV93124.1 - 0.16 12.2 0.3 16 5.7 0.1 2.8 3 0 0 3 3 2 0 AAA domain MeaB PF03308.16 AHV93124.1 - 0.18 10.7 0.3 11 4.9 0.1 2.4 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_27 PF13514.6 AHV93124.1 - 0.2 11.2 0.0 7 6.2 0.0 2.3 2 0 0 2 2 2 0 AAA domain PAP2 PF01569.21 AHV93125.1 - 7.1e-21 74.4 0.0 8.7e-21 74.1 0.0 1.1 1 0 0 1 1 1 1 PAP2 superfamily Iso_dh PF00180.20 AHV93126.1 - 3.3e-84 283.0 0.0 3.8e-84 282.8 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Helicase_C_2 PF13307.6 AHV93127.1 - 1.7e-32 112.9 0.0 2.5e-32 112.4 0.0 1.2 1 0 0 1 1 1 1 Helicase C-terminal domain HBB PF06777.11 AHV93127.1 - 2.7e-05 23.9 0.0 4.4e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 Helical and beta-bridge domain Pyr_redox_2 PF07992.14 AHV93128.1 - 3.8e-27 95.3 0.6 1.4e-26 93.4 0.6 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_20 PF14691.6 AHV93128.1 - 6.6e-26 90.3 0.1 1.1e-25 89.6 0.1 1.3 1 0 0 1 1 1 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Pyr_redox_3 PF13738.6 AHV93128.1 - 6.7e-13 48.6 0.6 2.9e-06 26.8 0.1 3.1 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 AHV93128.1 - 9.6e-12 45.0 0.1 6.6e-11 42.3 0.1 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 AHV93128.1 - 6.1e-11 42.7 0.3 3.7e-05 24.2 0.2 2.8 3 0 0 3 3 2 2 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.24 AHV93128.1 - 1.1e-08 34.8 1.3 1.7e-08 34.2 0.2 1.8 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase HI0933_like PF03486.14 AHV93128.1 - 1.9e-07 30.1 0.7 1.6e-06 27.1 0.1 2.4 3 0 0 3 3 3 1 HI0933-like protein FAD_oxidored PF12831.7 AHV93128.1 - 1.6e-06 27.7 0.1 1.6e-06 27.7 0.1 1.5 2 0 0 2 2 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 AHV93128.1 - 5.5e-06 25.7 0.9 5.5e-06 25.7 0.9 2.3 3 1 1 4 4 4 1 FAD binding domain DAO PF01266.24 AHV93128.1 - 6.1e-06 26.0 0.5 6.1e-06 26.0 0.5 2.5 2 1 0 3 3 3 1 FAD dependent oxidoreductase NAD_binding_7 PF13241.6 AHV93128.1 - 2.2e-05 24.8 0.6 0.016 15.6 0.0 2.9 3 0 0 3 3 3 1 Putative NAD(P)-binding FMO-like PF00743.19 AHV93128.1 - 3.7e-05 22.4 0.0 0.00052 18.6 0.0 2.1 2 0 0 2 2 2 1 Flavin-binding monooxygenase-like GIDA PF01134.22 AHV93128.1 - 4e-05 22.9 0.6 0.00076 18.7 0.0 2.2 2 0 0 2 2 2 1 Glucose inhibited division protein A Lycopene_cycl PF05834.12 AHV93128.1 - 4.7e-05 22.6 2.0 0.0084 15.2 0.4 3.0 2 1 1 3 3 3 1 Lycopene cyclase protein FAD_binding_3 PF01494.19 AHV93128.1 - 0.00015 21.1 0.2 0.00015 21.1 0.2 1.9 3 0 0 3 3 2 1 FAD binding domain NAD_binding_9 PF13454.6 AHV93128.1 - 0.00028 20.9 0.5 0.046 13.7 0.1 2.7 2 0 0 2 2 2 1 FAD-NAD(P)-binding Thi4 PF01946.17 AHV93128.1 - 0.00028 20.2 0.8 0.0005 19.4 0.1 1.7 2 0 0 2 2 2 1 Thi4 family AlaDh_PNT_C PF01262.21 AHV93128.1 - 0.00031 20.1 0.0 0.27 10.5 0.0 2.2 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain AdoHcyase_NAD PF00670.21 AHV93128.1 - 0.0011 19.1 1.4 1.5 8.9 0.2 2.5 2 0 0 2 2 2 2 S-adenosyl-L-homocysteine hydrolase, NAD binding domain K_oxygenase PF13434.6 AHV93128.1 - 0.0032 16.6 0.1 5.9 5.9 0.0 3.1 3 0 0 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) 3HCDH_N PF02737.18 AHV93128.1 - 0.0034 17.3 0.2 0.0098 15.8 0.1 1.8 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 AHV93128.1 - 0.02 14.3 0.1 0.91 8.9 0.1 2.3 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YjeF_N PF03853.15 AHV93128.1 - 0.037 13.9 1.2 0.99 9.3 0.0 2.7 3 0 0 3 3 3 0 YjeF-related protein N-terminus UDPG_MGDP_dh_N PF03721.14 AHV93128.1 - 0.075 12.6 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ApbA PF02558.16 AHV93128.1 - 0.084 12.5 0.0 0.17 11.5 0.0 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.23 AHV93128.1 - 0.11 12.4 0.0 0.23 11.5 0.0 1.5 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TrkA_N PF02254.18 AHV93128.1 - 0.12 12.6 0.7 1.1 9.5 0.0 2.7 3 0 0 3 3 3 0 TrkA-N domain F420_oxidored PF03807.17 AHV93128.1 - 0.13 12.8 0.4 1.4 9.6 0.1 2.6 3 0 0 3 3 2 0 NADP oxidoreductase coenzyme F420-dependent Fer4_7 PF12838.7 AHV93128.1 - 5.5 7.7 7.9 27 5.4 7.9 2.1 1 1 0 1 1 1 0 4Fe-4S dicluster domain Response_reg PF00072.24 AHV93129.1 - 1e-14 54.6 0.1 1.4e-14 54.2 0.1 1.3 1 0 0 1 1 1 1 Response regulator receiver domain Erythro-docking PF09277.11 AHV93129.1 - 0.066 13.1 0.6 0.33 10.9 0.0 2.2 2 0 0 2 2 2 0 Erythronolide synthase, docking FA_desaturase PF00487.24 AHV93130.1 - 2.1e-12 47.4 22.5 4.3e-12 46.4 22.5 1.5 1 1 0 1 1 1 1 Fatty acid desaturase DDE_Tnp_ISL3 PF01610.17 AHV93130.1 - 1.8e-08 34.4 1.0 2.7e-08 33.9 1.0 1.2 1 0 0 1 1 1 1 Transposase CoaE PF01121.20 AHV93131.1 - 1.3e-52 178.1 0.0 1.5e-52 177.8 0.0 1.0 1 0 0 1 1 1 1 Dephospho-CoA kinase SBD_N PF07005.11 AHV93131.1 - 0.00012 21.9 0.1 0.00021 21.1 0.1 1.3 1 0 0 1 1 1 1 Sugar-binding N-terminal domain AAA_33 PF13671.6 AHV93131.1 - 0.00042 20.5 0.2 0.0094 16.1 0.1 2.4 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 AHV93131.1 - 0.002 18.6 0.4 0.021 15.4 0.4 2.2 1 1 0 1 1 1 1 AAA domain SKI PF01202.22 AHV93131.1 - 0.0021 18.2 0.1 0.61 10.2 0.0 2.1 2 0 0 2 2 2 2 Shikimate kinase Actino_peptide PF14408.6 AHV93131.1 - 0.23 11.6 1.5 0.4 10.8 0.1 2.2 2 0 0 2 2 2 0 Ribosomally synthesised peptide in actinomycetes Peptidase_M23 PF01551.22 AHV93132.1 - 1.9e-28 98.5 0.0 4.3e-28 97.4 0.0 1.6 1 0 0 1 1 1 1 Peptidase family M23 Peptidase_M23_N PF18421.1 AHV93132.1 - 4.1e-26 90.7 0.7 6.9e-26 90.0 0.7 1.4 1 0 0 1 1 1 1 Peptidase family M23 N-terminal domain Polysacc_deac_1 PF01522.21 AHV93133.1 - 1.4e-28 99.3 0.0 1.8e-28 98.9 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide deacetylase DUF442 PF04273.13 AHV93133.1 - 0.16 12.0 0.0 0.32 11.1 0.0 1.6 1 0 0 1 1 1 0 Putative phosphatase (DUF442) Ribosomal_L34 PF00468.17 AHV93134.1 - 1.7e-22 79.1 12.2 1.8e-22 79.0 12.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L34 FAF PF11250.8 AHV93134.1 - 0.51 10.6 3.6 0.74 10.1 3.6 1.4 1 1 0 1 1 1 0 Fantastic Four meristem regulator Adenine_glyco PF03352.13 AHV93135.1 - 2.8e-68 229.2 0.0 3.5e-68 228.8 0.0 1.1 1 0 0 1 1 1 1 Methyladenine glycosylase PHB_depo_C PF06850.11 AHV93136.1 - 4.2e-94 313.7 0.0 5.3e-94 313.4 0.0 1.1 1 0 0 1 1 1 1 PHB de-polymerase C-terminus DUF1072 PF06380.11 AHV93136.1 - 0.0065 16.3 0.8 0.01 15.7 0.2 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF1072) B12-binding PF02310.19 AHV93136.1 - 0.15 12.1 0.1 5.2 7.1 0.0 2.2 1 1 1 2 2 2 0 B12 binding domain LZ_Tnp_IS481 PF13011.6 AHV93137.1 - 2.3e-22 79.3 2.6 4.6e-20 71.9 0.4 2.3 1 1 1 2 2 2 1 leucine-zipper of insertion element IS481 HTH_23 PF13384.6 AHV93137.1 - 2.6e-17 62.1 4.4 6.1e-08 32.2 0.1 2.3 2 0 0 2 2 2 2 Homeodomain-like domain HTH_28 PF13518.6 AHV93137.1 - 1.3e-16 60.4 2.6 2.9e-11 43.3 0.1 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_29 PF13551.6 AHV93137.1 - 3.9e-12 46.0 0.6 1.3e-06 28.3 0.0 2.3 2 0 0 2 2 2 2 Winged helix-turn helix HTH_32 PF13565.6 AHV93137.1 - 2.3e-11 44.1 0.7 4.3e-11 43.3 0.7 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_38 PF13936.6 AHV93137.1 - 2.1e-06 27.4 1.8 4.5e-06 26.3 1.1 1.9 2 1 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 AHV93137.1 - 4.2e-06 26.5 3.4 5e-05 23.1 1.2 2.3 2 0 0 2 2 2 1 MarR family HTH_Tnp_ISL3 PF13542.6 AHV93137.1 - 5.9e-06 25.6 1.9 0.0011 18.4 0.6 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 Sigma70_r4_2 PF08281.12 AHV93137.1 - 1.2e-05 24.9 0.1 0.0035 17.0 0.3 2.3 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 AHV93137.1 - 2.3e-05 23.8 0.1 0.00031 20.2 0.2 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 YdaS_antitoxin PF15943.5 AHV93137.1 - 9.9e-05 22.1 0.3 0.13 12.1 0.0 2.6 2 0 0 2 2 2 2 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_24 PF13412.6 AHV93137.1 - 0.00012 21.5 0.2 0.0012 18.4 0.3 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_3 PF01381.22 AHV93137.1 - 0.00013 22.0 0.7 0.0076 16.3 0.3 2.4 2 0 0 2 2 2 1 Helix-turn-helix HTH_Crp_2 PF13545.6 AHV93137.1 - 0.0002 21.3 0.4 0.0015 18.5 0.2 2.2 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_31 PF13560.6 AHV93137.1 - 0.00027 21.2 6.9 0.0014 18.9 2.8 2.9 2 2 0 2 2 2 1 Helix-turn-helix domain Trp_repressor PF01371.19 AHV93137.1 - 0.00036 20.6 0.2 0.0033 17.5 0.1 2.0 2 0 0 2 2 2 1 Trp repressor protein LacI PF00356.21 AHV93137.1 - 0.00049 19.8 1.2 0.0027 17.5 0.7 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family CENP-B_N PF04218.13 AHV93137.1 - 0.00051 19.6 0.0 0.88 9.2 0.1 2.3 2 0 0 2 2 2 2 CENP-B N-terminal DNA-binding domain HTH_5 PF01022.20 AHV93137.1 - 0.00067 19.5 0.0 0.5 10.3 0.0 2.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.19 AHV93137.1 - 0.00069 19.8 0.0 0.018 15.2 0.0 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain SpoIIID PF12116.8 AHV93137.1 - 0.00094 19.2 0.0 0.54 10.4 0.0 2.2 2 0 0 2 2 2 1 Stage III sporulation protein D HTH_IclR PF09339.10 AHV93137.1 - 0.00099 18.9 1.6 0.019 14.7 0.7 2.5 2 0 0 2 2 2 1 IclR helix-turn-helix domain RepB PF07506.11 AHV93137.1 - 0.0011 19.1 0.2 0.21 11.6 0.1 2.3 1 1 1 2 2 2 1 RepB plasmid partitioning protein HTH_11 PF08279.12 AHV93137.1 - 0.0014 18.5 0.5 0.008 16.1 0.5 2.1 2 0 0 2 2 2 1 HTH domain HTH_psq PF05225.16 AHV93137.1 - 0.0016 18.1 0.5 1.3 8.8 0.5 2.3 2 0 0 2 2 2 1 helix-turn-helix, Psq domain GntR PF00392.21 AHV93137.1 - 0.0021 17.6 0.8 0.28 10.8 0.4 2.4 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_AsnC-type PF13404.6 AHV93137.1 - 0.0023 17.7 3.1 0.03 14.2 1.4 2.6 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_Tnp_1 PF01527.20 AHV93137.1 - 0.0025 18.1 0.4 0.052 13.9 0.0 2.2 1 1 1 2 2 2 1 Transposase HTH_17 PF12728.7 AHV93137.1 - 0.003 17.7 0.1 3.5 7.9 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_10 PF04967.12 AHV93137.1 - 0.0047 16.7 0.1 0.028 14.2 0.2 2.0 2 0 0 2 2 2 1 HTH DNA binding domain HTH_35 PF13693.6 AHV93137.1 - 0.0051 16.8 0.9 0.038 14.0 0.6 2.2 1 1 1 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_30 PF13556.6 AHV93137.1 - 0.0058 16.4 0.1 0.97 9.3 0.0 2.3 2 0 0 2 2 2 1 PucR C-terminal helix-turn-helix domain UPF0175 PF03683.13 AHV93137.1 - 0.0061 16.2 0.4 0.052 13.3 0.1 2.2 2 1 1 3 3 2 1 Uncharacterised protein family (UPF0175) HTH_37 PF13744.6 AHV93137.1 - 0.0076 16.2 0.1 0.065 13.2 0.1 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Tnp_4 PF13613.6 AHV93137.1 - 0.0098 15.6 0.1 0.038 13.7 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix of DDE superfamily endonuclease Crp PF00325.20 AHV93137.1 - 0.015 15.0 1.5 0.036 13.7 0.5 2.1 2 0 0 2 2 2 0 Bacterial regulatory proteins, crp family HTH_36 PF13730.6 AHV93137.1 - 0.016 15.1 0.0 0.32 11.0 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain MerR PF00376.23 AHV93137.1 - 0.017 14.9 1.3 1.9 8.3 0.0 2.8 3 0 0 3 3 2 0 MerR family regulatory protein MarR PF01047.22 AHV93137.1 - 0.02 14.8 0.1 0.08 12.9 0.1 2.0 2 0 0 2 2 2 0 MarR family P22_Cro PF14549.6 AHV93137.1 - 0.027 14.3 2.0 5.1 7.0 0.1 2.3 2 0 0 2 2 2 0 DNA-binding transcriptional regulator Cro DUF746 PF05344.11 AHV93137.1 - 0.036 13.9 0.1 0.54 10.1 0.0 2.2 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) HTH_1 PF00126.27 AHV93137.1 - 0.046 13.7 3.0 2.7 8.0 0.5 2.4 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_DeoR PF08220.12 AHV93137.1 - 0.054 13.3 0.1 5.6 6.8 0.0 2.2 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain Glyc_hyd_38C_2 PF18230.1 AHV93137.1 - 0.059 13.5 0.0 0.63 10.2 0.0 2.1 2 0 0 2 2 2 0 Glycosyl hydrolases family 38 C-terminal sub-domain HTH_Tnp_Tc3_2 PF01498.18 AHV93137.1 - 0.076 13.3 1.5 0.24 11.7 0.1 2.5 2 0 0 2 2 2 0 Transposase Sigma54_DBD PF04552.13 AHV93137.1 - 0.09 12.5 0.1 0.16 11.7 0.1 1.4 1 0 0 1 1 1 0 Sigma-54, DNA binding domain HTH_8 PF02954.19 AHV93137.1 - 0.098 12.5 0.9 8.2 6.3 0.8 2.3 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family TrmB PF01978.19 AHV93137.1 - 0.11 12.3 0.0 0.34 10.8 0.1 1.7 2 0 0 2 2 1 0 Sugar-specific transcriptional regulator TrmB HTH_7 PF02796.15 AHV93137.1 - 0.12 12.5 0.4 0.28 11.3 0.1 1.7 2 0 0 2 2 1 0 Helix-turn-helix domain of resolvase DUF1804 PF08822.11 AHV93137.1 - 0.13 12.2 0.2 10 6.1 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1804) HTH_26 PF13443.6 AHV93137.1 - 0.19 12.2 0.0 2 8.9 0.1 2.1 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain DUF977 PF06163.11 AHV93137.1 - 0.2 11.6 0.6 11 6.0 0.1 2.3 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF977) MerR_1 PF13411.6 AHV93137.1 - 0.23 11.6 0.9 1.4 9.1 0.0 2.3 3 0 0 3 3 2 0 MerR HTH family regulatory protein Secretin PF00263.21 AHV93138.1 - 1.3e-44 151.8 0.3 1.5e-44 151.6 0.3 1.0 1 0 0 1 1 1 1 Bacterial type II and III secretion system protein AA_permease PF00324.21 AHV93139.1 - 1.2e-135 452.9 36.2 1.4e-135 452.6 36.2 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.6 AHV93139.1 - 1.8e-39 135.8 39.4 4.5e-39 134.5 39.7 1.4 1 1 1 2 2 2 1 Amino acid permease Peptidase_S11 PF00768.20 AHV93140.1 - 1.2e-78 263.9 0.0 1.7e-78 263.4 0.0 1.1 1 0 0 1 1 1 1 D-alanyl-D-alanine carboxypeptidase PBP5_C PF07943.13 AHV93140.1 - 1.3e-20 73.4 0.0 3e-20 72.2 0.0 1.6 1 0 0 1 1 1 1 Penicillin-binding protein 5, C-terminal domain Beta-lactamase2 PF13354.6 AHV93140.1 - 5.3e-16 58.8 0.0 7.2e-16 58.4 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase enzyme family Peptidase_S13 PF02113.15 AHV93140.1 - 0.0016 17.2 0.1 0.0027 16.5 0.1 1.3 1 0 0 1 1 1 1 D-Ala-D-Ala carboxypeptidase 3 (S13) family Beta-lactamase PF00144.24 AHV93140.1 - 0.017 14.4 0.8 0.24 10.6 0.1 2.3 1 1 1 2 2 2 0 Beta-lactamase Ferritin PF00210.24 AHV93141.1 - 1.9e-40 138.1 2.1 2.3e-40 137.8 2.1 1.1 1 0 0 1 1 1 1 Ferritin-like domain DUF1241 PF06840.11 AHV93141.1 - 0.069 12.8 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1241) POR PF01558.18 AHV93142.1 - 0.0096 16.0 0.0 0.02 15.0 0.0 1.5 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase BOF PF04076.13 AHV93143.1 - 2.7e-18 65.9 0.0 3.3e-18 65.6 0.0 1.1 1 0 0 1 1 1 1 Bacterial OB fold (BOF) protein NAD_binding_11 PF14833.6 AHV93144.1 - 1.6e-36 125.3 0.2 2.2e-36 124.8 0.2 1.2 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NAD_binding_2 PF03446.15 AHV93144.1 - 5.5e-17 62.4 0.4 9.7e-17 61.6 0.4 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase FCD PF07729.12 AHV93145.1 - 1.6e-23 83.4 14.1 2.3e-23 82.9 14.1 1.2 1 0 0 1 1 1 1 FCD domain GntR PF00392.21 AHV93145.1 - 3.4e-05 23.4 0.1 8.4e-05 22.1 0.1 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family TetR_C_15 PF17918.1 AHV93145.1 - 0.34 11.7 9.9 0.98 10.2 7.8 2.4 1 1 1 2 2 2 0 Tetracyclin repressor-like, C-terminal domain Peripla_BP_6 PF13458.6 AHV93147.1 - 6e-05 22.9 0.2 7.2e-05 22.6 0.2 1.1 1 0 0 1 1 1 1 Periplasmic binding protein HNF-1B_C PF04812.13 AHV93147.1 - 0.033 14.0 0.2 0.039 13.8 0.2 1.0 1 0 0 1 1 1 0 Hepatocyte nuclear factor 1 (HNF-1), beta isoform C terminus FecR PF04773.13 AHV93148.1 - 4.6e-23 81.7 0.0 7.3e-23 81.0 0.0 1.3 1 0 0 1 1 1 1 FecR protein DUF4880 PF16220.5 AHV93148.1 - 1.6e-12 47.1 18.5 1.6e-12 47.1 18.5 2.4 3 0 0 3 3 3 1 Domain of unknown function (DUF4880) TSP_C PF05735.12 AHV93148.1 - 0.062 13.2 0.0 0.098 12.6 0.0 1.2 1 0 0 1 1 1 0 Thrombospondin C-terminal region TctC PF03401.14 AHV93149.1 - 1.1e-58 198.4 2.1 1.3e-58 198.3 2.1 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor Phosphonate-bd PF12974.7 AHV93149.1 - 0.0013 18.4 0.5 0.04 13.5 0.1 2.7 3 0 0 3 3 3 1 ABC transporter, phosphonate, periplasmic substrate-binding protein PALP PF00291.25 AHV93150.1 - 1.2e-76 257.9 1.2 1.4e-76 257.7 1.2 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Wyosine_form PF08608.12 AHV93150.1 - 0.099 13.0 0.0 0.24 11.8 0.0 1.7 1 0 0 1 1 1 0 Wyosine base formation HATPase_c PF02518.26 AHV93151.1 - 7.7e-19 68.3 0.0 1.5e-18 67.3 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 AHV93151.1 - 6.2e-13 48.6 0.6 1.6e-12 47.3 0.6 1.7 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.6 AHV93151.1 - 3.6e-05 23.7 0.2 0.00061 19.7 0.0 2.2 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain HisKA_3 PF07730.13 AHV93151.1 - 0.18 12.4 6.6 0.13 12.8 3.7 2.3 1 1 1 2 2 2 0 Histidine kinase DUF4381 PF14316.6 AHV93151.1 - 1.7 8.9 13.3 0.27 11.5 7.0 2.5 2 1 1 3 3 3 0 Domain of unknown function (DUF4381) GvpL_GvpF PF06386.11 AHV93151.1 - 2.6 7.9 5.1 11 5.9 2.1 2.1 2 0 0 2 2 2 0 Gas vesicle synthesis protein GvpL/GvpF PKHD_C PF18331.1 AHV93152.1 - 1.5e-19 69.7 0.0 2.9e-19 68.8 0.0 1.5 1 0 0 1 1 1 1 PKHD-type hydroxylase C-terminal domain 2OG-FeII_Oxy_3 PF13640.6 AHV93152.1 - 1.1e-16 61.4 0.0 1.8e-16 60.8 0.0 1.3 1 0 0 1 1 1 1 2OG-Fe(II) oxygenase superfamily 2OG-FeII_Oxy PF03171.20 AHV93152.1 - 0.00013 22.4 0.0 0.00024 21.5 0.0 1.5 1 0 0 1 1 1 1 2OG-Fe(II) oxygenase superfamily Cupin_2 PF07883.11 AHV93152.1 - 0.011 15.4 0.1 0.046 13.4 0.0 2.0 2 0 0 2 2 2 0 Cupin domain 2OG-FeII_Oxy_5 PF13759.6 AHV93152.1 - 0.012 16.0 0.0 0.027 14.9 0.0 1.5 1 1 0 1 1 1 0 Putative 2OG-Fe(II) oxygenase Cupin_6 PF12852.7 AHV93152.1 - 0.018 14.7 0.0 0.033 13.9 0.0 1.4 1 0 0 1 1 1 0 Cupin HAD_2 PF13419.6 AHV93153.1 - 1.5e-30 106.6 0.0 1.8e-30 106.3 0.0 1.0 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 AHV93153.1 - 3.5e-17 63.4 0.0 3.6e-15 56.8 0.0 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 AHV93153.1 - 8.5e-10 38.6 0.1 1.7e-09 37.6 0.1 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 AHV93153.1 - 1.6e-09 38.5 0.3 2.8e-09 37.6 0.3 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 AHV93153.1 - 0.029 14.5 0.0 0.15 12.2 0.0 2.1 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Trehalose_PPase PF02358.16 AHV93153.1 - 0.071 12.2 0.0 0.23 10.6 0.0 1.7 2 0 0 2 2 2 0 Trehalose-phosphatase Bac_export_1 PF01311.20 AHV93154.1 - 1.3e-68 231.0 27.3 1.5e-68 230.8 27.3 1.0 1 0 0 1 1 1 1 Bacterial export proteins, family 1 OMP_b-brl PF13505.6 AHV93155.1 - 0.0015 18.7 1.0 0.0018 18.4 1.0 1.2 1 0 0 1 1 1 1 Outer membrane protein beta-barrel domain Autotransporter PF03797.19 AHV93155.1 - 0.0018 18.0 0.2 0.0024 17.6 0.2 1.2 1 0 0 1 1 1 1 Autotransporter beta-domain Ldh_2 PF02615.14 AHV93156.1 - 8e-16 58.1 0.0 8.7e-16 58.0 0.0 1.0 1 0 0 1 1 1 1 Malate/L-lactate dehydrogenase Arm-DNA-bind_4 PF14657.6 AHV93157.1 - 0.00047 19.9 0.4 0.0013 18.4 0.4 1.8 2 0 0 2 2 2 1 Arm DNA-binding domain Porin_4 PF13609.6 AHV93158.1 - 2.3e-48 165.6 13.3 2.9e-48 165.3 13.3 1.1 1 0 0 1 1 1 1 Gram-negative porin Porin_1 PF00267.21 AHV93158.1 - 1.1e-11 44.8 5.1 1.4e-09 37.9 3.6 2.2 2 0 0 2 2 2 2 Gram-negative porin ABC_tran PF00005.27 AHV93159.1 - 6.4e-33 114.2 0.0 9.7e-33 113.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 AHV93159.1 - 7.4e-10 39.1 0.0 0.0011 18.9 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE_2 PF08402.10 AHV93159.1 - 5.9e-07 29.6 0.1 2.5e-06 27.6 0.0 2.1 2 0 0 2 2 2 1 TOBE domain SMC_N PF02463.19 AHV93159.1 - 9.8e-06 25.2 0.0 0.013 14.9 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA PF00004.29 AHV93159.1 - 2.3e-05 24.8 0.1 0.00023 21.6 0.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 AHV93159.1 - 0.00015 22.2 1.2 0.0004 20.8 1.1 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 AHV93159.1 - 0.00053 19.8 0.0 0.0012 18.6 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.14 AHV93159.1 - 0.00059 19.9 0.0 0.0013 18.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) NACHT PF05729.12 AHV93159.1 - 0.0023 17.9 0.1 0.0069 16.3 0.0 1.8 2 0 0 2 2 2 1 NACHT domain RsgA_GTPase PF03193.16 AHV93159.1 - 0.0026 17.7 0.0 0.0047 16.8 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_23 PF13476.6 AHV93159.1 - 0.0032 18.0 0.0 0.0053 17.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 AHV93159.1 - 0.0039 16.9 0.0 0.012 15.4 0.0 1.8 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_28 PF13521.6 AHV93159.1 - 0.0039 17.4 0.3 0.015 15.5 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.6 AHV93159.1 - 0.011 15.3 0.3 0.1 12.2 0.1 2.2 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 AHV93159.1 - 0.011 16.0 0.2 0.036 14.3 0.0 1.9 2 0 0 2 2 2 0 AAA domain ABC_ATPase PF09818.9 AHV93159.1 - 0.016 14.0 0.3 0.65 8.7 0.1 2.3 2 1 0 2 2 2 0 Predicted ATPase of the ABC class PduV-EutP PF10662.9 AHV93159.1 - 0.019 14.7 0.0 0.032 14.0 0.0 1.3 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation MMR_HSR1 PF01926.23 AHV93159.1 - 0.02 15.0 0.0 0.042 13.9 0.0 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_18 PF13238.6 AHV93159.1 - 0.02 15.4 0.1 0.055 14.0 0.0 1.8 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 AHV93159.1 - 0.022 14.5 0.0 0.042 13.6 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein TsaE PF02367.17 AHV93159.1 - 0.025 14.6 0.0 0.051 13.6 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Rad17 PF03215.15 AHV93159.1 - 0.04 13.8 0.0 0.065 13.1 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain ATP-synt_ab PF00006.25 AHV93159.1 - 0.044 13.4 0.0 0.048 13.3 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain ATPase_2 PF01637.18 AHV93159.1 - 0.069 13.1 0.0 0.11 12.4 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_19 PF13245.6 AHV93159.1 - 0.075 13.4 0.1 0.92 9.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 AHV93159.1 - 0.084 13.0 0.4 0.25 11.5 0.4 2.0 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 AHV93159.1 - 0.095 12.1 0.1 1.3 8.4 0.0 2.3 2 1 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_24 PF13479.6 AHV93159.1 - 0.16 11.7 0.0 0.64 9.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 AHV93159.1 - 0.2 10.8 0.0 0.38 9.9 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain AAA_14 PF13173.6 AHV93159.1 - 0.23 11.5 0.0 0.42 10.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 AHV93159.1 - 0.24 11.8 0.0 0.43 11.0 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_15 PF13175.6 AHV93159.1 - 0.3 10.8 0.0 0.42 10.3 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain ATP_bind_3 PF01171.20 AHV93160.1 - 3.2e-12 46.6 0.0 4.8e-12 46.0 0.0 1.2 1 0 0 1 1 1 1 PP-loop family Sigma70_r4_2 PF08281.12 AHV93161.1 - 3.4e-14 52.2 0.2 7.1e-14 51.2 0.0 1.7 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r2 PF04542.14 AHV93161.1 - 1.5e-10 40.7 0.9 4.1e-10 39.3 0.9 1.7 1 0 0 1 1 1 1 Sigma-70 region 2 Sigma70_r4 PF04545.16 AHV93161.1 - 3.3e-09 36.1 0.2 9.1e-09 34.7 0.0 1.8 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_ECF PF07638.11 AHV93161.1 - 6.9e-09 35.9 0.9 9.3e-09 35.4 0.9 1.2 1 0 0 1 1 1 1 ECF sigma factor HTH_23 PF13384.6 AHV93161.1 - 5.2e-05 22.9 0.1 0.00037 20.2 0.0 2.2 2 0 0 2 2 2 1 Homeodomain-like domain KORA PF16509.5 AHV93161.1 - 0.0099 16.1 0.1 0.083 13.2 0.1 2.2 2 0 0 2 2 2 1 TrfB plasmid transcriptional repressor HTH_24 PF13412.6 AHV93161.1 - 0.037 13.6 0.0 0.07 12.7 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 AHV93161.1 - 0.053 13.5 0.0 0.11 12.5 0.0 1.5 1 0 0 1 1 1 0 HTH domain HTH_DeoR PF08220.12 AHV93161.1 - 0.059 13.1 0.0 0.38 10.5 0.0 2.1 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain HTH_28 PF13518.6 AHV93161.1 - 0.067 13.3 0.3 0.28 11.3 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_31 PF13560.6 AHV93161.1 - 0.18 12.2 5.9 0.94 9.9 0.3 2.7 1 1 2 3 3 3 0 Helix-turn-helix domain COQ7 PF03232.13 AHV93162.1 - 1.6e-41 142.0 0.7 2e-41 141.6 0.7 1.1 1 0 0 1 1 1 1 Ubiquinone biosynthesis protein COQ7 Rubrerythrin PF02915.17 AHV93162.1 - 2.3e-07 31.3 0.2 3.2e-06 27.6 0.0 2.0 1 1 1 2 2 2 1 Rubrerythrin Ferritin PF00210.24 AHV93162.1 - 0.018 15.0 0.2 0.084 12.8 0.0 2.0 2 0 0 2 2 2 0 Ferritin-like domain DUF1007 PF06226.13 AHV93164.1 - 1.4e-47 162.4 0.0 1.6e-47 162.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1007) BPD_transp_1 PF00528.22 AHV93165.1 - 6e-21 75.0 12.5 6e-21 75.0 12.5 2.8 2 1 1 3 3 3 2 Binding-protein-dependent transport system inner membrane component SAYSvFN PF10260.9 AHV93165.1 - 0.12 12.3 0.0 0.3 11.0 0.0 1.7 1 0 0 1 1 1 0 Uncharacterized conserved domain (SAYSvFN) AI-2E_transport PF01594.16 AHV93167.1 - 4.3e-55 187.1 32.6 5.4e-55 186.8 32.6 1.0 1 0 0 1 1 1 1 AI-2E family transporter Sigma70_r4_2 PF08281.12 AHV93168.1 - 1.7e-10 40.4 0.1 2.6e-10 39.8 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r2 PF04542.14 AHV93168.1 - 9.3e-09 34.9 0.4 1.6e-08 34.2 0.4 1.3 1 0 0 1 1 1 1 Sigma-70 region 2 Sigma70_r4 PF04545.16 AHV93168.1 - 3.1e-06 26.6 0.1 6.1e-06 25.7 0.1 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_ECF PF07638.11 AHV93168.1 - 9.3e-06 25.6 0.3 2.3e-05 24.3 0.3 1.6 1 1 0 1 1 1 1 ECF sigma factor HTH_23 PF13384.6 AHV93168.1 - 0.0024 17.6 0.0 0.0065 16.2 0.0 1.8 1 0 0 1 1 1 1 Homeodomain-like domain HTH_3 PF01381.22 AHV93168.1 - 0.0048 16.9 0.4 0.011 15.7 0.1 1.7 2 0 0 2 2 2 1 Helix-turn-helix HTH_24 PF13412.6 AHV93168.1 - 0.0062 16.1 0.0 0.012 15.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_31 PF13560.6 AHV93168.1 - 0.02 15.2 1.3 0.036 14.4 0.6 2.0 1 1 1 2 2 2 0 Helix-turn-helix domain GerE PF00196.19 AHV93168.1 - 0.025 14.1 0.0 0.046 13.3 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family MarR_2 PF12802.7 AHV93168.1 - 0.052 13.4 0.1 0.34 10.8 0.0 2.2 2 0 0 2 2 2 0 MarR family HTH_38 PF13936.6 AHV93168.1 - 0.096 12.5 0.0 0.21 11.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_40 PF14493.6 AHV93168.1 - 0.11 13.0 0.0 0.22 12.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain PrpF PF04303.13 AHV93169.1 - 1.8e-169 563.6 1.4 2e-169 563.4 1.4 1.0 1 0 0 1 1 1 1 PrpF protein peroxidase PF00141.23 AHV93170.1 - 2.3e-91 305.5 0.0 1.6e-48 165.4 0.0 2.2 2 0 0 2 2 2 2 Peroxidase GST_C_3 PF14497.6 AHV93170.1 - 0.046 13.9 0.0 8 6.7 0.0 2.5 2 0 0 2 2 2 0 Glutathione S-transferase, C-terminal domain RHH_1 PF01402.21 AHV93170.1 - 0.084 12.8 0.1 0.19 11.7 0.1 1.6 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family CorC_HlyC PF03471.17 AHV93171.1 - 2e-17 63.0 0.0 5.7e-17 61.5 0.0 1.8 2 0 0 2 2 2 1 Transporter associated domain CBS PF00571.28 AHV93171.1 - 1.5e-11 44.5 2.0 3.7e-05 24.1 0.2 2.4 2 0 0 2 2 2 2 CBS domain UPF0029 PF01205.19 AHV93172.1 - 1.3e-11 44.8 0.1 1.6e-11 44.4 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized protein family UPF0029 LysR_substrate PF03466.20 AHV93173.1 - 2.4e-26 92.4 0.0 3.3e-26 92.0 0.0 1.2 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 AHV93173.1 - 4.7e-18 64.9 0.6 7.4e-18 64.3 0.6 1.3 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_30 PF13556.6 AHV93173.1 - 0.001 18.8 0.7 0.0023 17.7 0.7 1.6 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain GST_N_3 PF13417.6 AHV93174.1 - 5.6e-18 65.1 0.3 1.6e-17 63.7 0.1 1.8 2 0 0 2 2 2 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.6 AHV93174.1 - 3.7e-16 59.2 0.0 7.2e-16 58.2 0.0 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N PF02798.20 AHV93174.1 - 4.1e-14 52.7 0.0 7.7e-14 51.8 0.0 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_C_2 PF13410.6 AHV93174.1 - 9.7e-06 25.5 0.0 2.1e-05 24.4 0.0 1.6 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C_3 PF14497.6 AHV93174.1 - 1.9e-05 24.8 0.0 3.6e-05 23.9 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C PF00043.25 AHV93174.1 - 0.0051 17.0 0.0 0.011 16.0 0.0 1.6 1 1 0 1 1 1 1 Glutathione S-transferase, C-terminal domain VIT1 PF01988.19 AHV93175.1 - 2e-38 132.4 10.9 2.5e-38 132.1 10.9 1.0 1 0 0 1 1 1 1 VIT family TraT PF05818.12 AHV93175.1 - 7 6.3 11.1 0.6 9.8 0.7 2.1 2 0 0 2 2 2 0 Enterobacterial TraT complement resistance protein Sod_Cu PF00080.20 AHV93178.1 - 5.4e-31 107.7 0.3 6.4e-31 107.4 0.3 1.0 1 0 0 1 1 1 1 Copper/zinc superoxide dismutase (SODC) Radical_SAM PF04055.21 AHV93179.1 - 4.1e-15 56.6 0.0 6.6e-15 55.9 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily HemN_C PF06969.16 AHV93179.1 - 1.6e-12 47.3 0.3 4.1e-12 46.0 0.3 1.7 1 0 0 1 1 1 1 HemN C-terminal domain Transgly PF00912.22 AHV93180.1 - 6.6e-54 182.1 0.2 8.5e-54 181.7 0.2 1.1 1 0 0 1 1 1 1 Transglycosylase DUF4381 PF14316.6 AHV93180.1 - 0.081 13.2 1.3 0.13 12.5 0.2 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4381) NUDIX PF00293.28 AHV93182.1 - 1.9e-16 60.3 0.0 3.1e-16 59.6 0.0 1.3 1 0 0 1 1 1 1 NUDIX domain zf-NADH-PPase PF09297.11 AHV93182.1 - 7.6e-11 41.5 7.6 2.4e-10 39.9 7.6 1.9 1 0 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain NUDIX-like PF09296.11 AHV93182.1 - 0.0051 17.4 0.1 0.011 16.4 0.1 1.7 1 0 0 1 1 1 1 NADH pyrophosphatase-like rudimentary NUDIX domain DZR PF12773.7 AHV93182.1 - 0.014 15.4 2.0 0.026 14.5 2.0 1.4 1 0 0 1 1 1 0 Double zinc ribbon HypA PF01155.19 AHV93182.1 - 0.023 14.7 0.0 0.037 14.0 0.0 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Bestrophin PF01062.21 AHV93183.1 - 1.4e-61 208.4 0.0 1.7e-61 208.2 0.0 1.0 1 0 0 1 1 1 1 Bestrophin, RFP-TM, chloride channel GCV_T PF01571.21 AHV93185.1 - 3.1e-51 174.2 0.0 3.9e-51 173.9 0.0 1.1 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.11 AHV93185.1 - 2.5e-16 59.4 0.1 4.4e-16 58.6 0.1 1.4 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain POPLD PF08170.12 AHV93185.1 - 7.1e-05 23.1 0.0 0.00019 21.7 0.0 1.7 1 1 1 2 2 2 1 POPLD (NUC188) domain SoxG PF04268.12 AHV93185.1 - 0.001 19.2 0.0 0.014 15.5 0.0 2.1 1 1 0 1 1 1 1 Sarcosine oxidase, gamma subunit family Agenet PF05641.12 AHV93185.1 - 0.12 12.8 0.1 0.22 12.0 0.1 1.4 1 0 0 1 1 1 0 Agenet domain DDE_Tnp_ISL3 PF01610.17 AHV93187.1 - 1.6e-64 217.9 1.1 2.4e-64 217.3 0.2 1.6 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV93187.1 - 1.4e-11 43.6 0.1 3.6e-11 42.3 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV93187.1 - 5.2e-09 36.6 11.2 1.1e-08 35.6 11.2 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV93187.1 - 0.0056 16.7 0.2 0.016 15.3 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain NOB1_Zn_bind PF08772.11 AHV93187.1 - 0.017 15.3 0.2 1.2 9.3 0.0 2.5 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like SLT_L PF14718.6 AHV93187.1 - 0.023 14.8 1.3 0.023 14.8 1.3 1.8 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain zf-IS66 PF13005.7 AHV93187.1 - 1 9.8 6.6 3.6 8.1 6.6 2.0 1 0 0 1 1 1 0 zinc-finger binding domain of transposase IS66 MFS_1 PF07690.16 AHV93188.1 - 0.0029 16.6 0.2 0.0029 16.6 0.2 2.0 1 1 1 2 2 2 1 Major Facilitator Superfamily Phage_holin_3_6 PF07332.11 AHV93188.1 - 0.026 14.6 9.9 0.096 12.7 2.0 2.2 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III DUF3367 PF11847.8 AHV93188.1 - 0.049 11.5 4.8 0.06 11.2 4.8 1.1 1 0 0 1 1 1 0 Alpha-(1->3)-arabinofuranosyltransferase DUF3290 PF11694.8 AHV93188.1 - 0.18 11.7 0.1 0.33 10.9 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3290) DUF2628 PF10947.8 AHV93188.1 - 0.23 11.9 5.0 0.38 11.2 5.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2628) DUF202 PF02656.15 AHV93188.1 - 0.3 11.5 9.9 1.3 9.5 1.7 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF202) IF3_C PF00707.22 AHV93190.1 - 2.2e-40 136.5 1.3 4.1e-40 135.6 1.1 1.5 2 0 0 2 2 2 1 Translation initiation factor IF-3, C-terminal domain IF3_N PF05198.16 AHV93190.1 - 3.4e-23 81.7 0.0 7.6e-23 80.6 0.0 1.6 1 0 0 1 1 1 1 Translation initiation factor IF-3, N-terminal domain Tubulin_3 PF14881.6 AHV93190.1 - 0.027 14.2 0.1 0.037 13.7 0.1 1.3 1 1 0 1 1 1 0 Tubulin domain PCuAC PF04314.13 AHV93190.1 - 0.046 13.5 0.1 0.1 12.4 0.0 1.7 2 0 0 2 2 2 0 Copper chaperone PCu(A)C PNP_UDP_1 PF01048.20 AHV93191.1 - 1.3e-47 162.1 3.4 1.4e-47 161.9 3.4 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily S1 PF00575.23 AHV93193.1 - 1.2e-99 326.8 23.4 1.7e-23 82.7 0.5 6.1 6 0 0 6 6 6 6 S1 RNA binding domain PCB_OB PF17092.5 AHV93193.1 - 1.9e-06 28.6 2.9 2.1 9.1 0.0 6.0 2 1 4 6 6 6 2 Penicillin-binding protein OB-like domain S1_2 PF13509.6 AHV93193.1 - 0.0012 18.9 6.4 6.9 6.8 0.0 5.8 5 2 0 5 5 5 1 S1 domain TOBE PF03459.17 AHV93193.1 - 0.03 14.6 6.4 0.25 11.7 0.2 4.6 4 0 0 4 4 4 0 TOBE domain CsrA PF02599.16 AHV93193.1 - 0.088 12.8 4.3 6.3 6.8 0.1 3.8 4 0 0 4 4 4 0 Global regulator protein family Cofilin_ADF PF00241.20 AHV93193.1 - 0.15 11.8 0.6 10 6.0 0.0 3.5 4 0 0 4 4 4 0 Cofilin/tropomyosin-type actin-binding protein DUF1344 PF07076.11 AHV93193.1 - 0.16 11.9 0.9 29 4.6 0.0 3.9 5 0 0 5 5 5 0 Protein of unknown function (DUF1344) TOBE_2 PF08402.10 AHV93193.1 - 2.3 8.4 6.0 6.1 7.1 0.0 3.9 6 0 0 6 6 6 0 TOBE domain DUF3225 PF11533.8 AHV93194.1 - 3e-56 188.6 0.6 3.3e-56 188.4 0.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3225) DUF4440 PF14534.6 AHV93194.1 - 9.3e-09 35.7 1.0 1.2e-08 35.3 1.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4440) SnoaL_3 PF13474.6 AHV93194.1 - 9.6e-09 35.5 0.7 1.1e-08 35.3 0.7 1.1 1 0 0 1 1 1 1 SnoaL-like domain CaMKII_AD PF08332.10 AHV93194.1 - 0.017 15.2 0.4 0.048 13.8 0.4 1.8 1 1 0 1 1 1 0 Calcium/calmodulin dependent protein kinase II association domain Halo_GVPC PF05465.13 AHV93194.1 - 2.3 8.5 6.5 3.2 8.1 0.1 3.0 3 0 0 3 3 3 0 Halobacterial gas vesicle protein C (GVPC) repeat ETF PF01012.21 AHV93195.1 - 9.4e-48 162.5 5.1 1.4e-47 161.9 5.1 1.2 1 0 0 1 1 1 1 Electron transfer flavoprotein domain rve PF00665.26 AHV93196.1 - 2.9e-32 111.3 0.7 4.3e-32 110.8 0.1 1.6 2 0 0 2 2 1 1 Integrase core domain LZ_Tnp_IS481 PF13011.6 AHV93196.1 - 6.7e-22 77.8 2.6 9.9e-20 70.9 0.4 2.6 1 1 1 2 2 2 1 leucine-zipper of insertion element IS481 rve_3 PF13683.6 AHV93196.1 - 5e-19 67.8 2.7 1.2e-18 66.6 2.7 1.7 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.6 AHV93196.1 - 5e-17 61.2 4.3 1.2e-07 31.3 0.1 2.7 2 0 0 2 2 2 2 Homeodomain-like domain HTH_28 PF13518.6 AHV93196.1 - 1.2e-15 57.4 6.3 5.9e-11 42.3 0.1 3.4 4 0 0 4 4 3 2 Helix-turn-helix domain HTH_29 PF13551.6 AHV93196.1 - 1.2e-11 44.4 0.8 2.9e-06 27.2 0.0 2.6 2 0 0 2 2 2 2 Winged helix-turn helix HTH_32 PF13565.6 AHV93196.1 - 1.9e-10 41.2 0.8 1.9e-10 41.2 0.8 2.4 2 1 0 2 2 2 1 Homeodomain-like domain HTH_38 PF13936.6 AHV93196.1 - 1.5e-06 27.9 0.6 5.1e-06 26.1 0.5 2.1 2 0 0 2 2 1 1 Helix-turn-helix domain MarR_2 PF12802.7 AHV93196.1 - 6.5e-06 25.9 3.0 7.9e-05 22.5 1.1 2.6 2 0 0 2 2 2 1 MarR family HTH_31 PF13560.6 AHV93196.1 - 1.6e-05 25.2 1.9 0.00059 20.1 0.4 3.2 3 0 0 3 3 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 AHV93196.1 - 2.8e-05 23.7 0.1 0.006 16.2 0.2 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 AHV93196.1 - 5e-05 22.7 0.1 0.00061 19.2 0.2 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 YdaS_antitoxin PF15943.5 AHV93196.1 - 0.00023 21.0 0.2 0.24 11.3 0.0 2.8 2 0 0 2 2 2 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_Tnp_ISL3 PF13542.6 AHV93196.1 - 0.00027 20.3 8.5 0.0022 17.3 0.6 3.9 4 0 0 4 4 3 1 Helix-turn-helix domain of transposase family ISL3 HTH_24 PF13412.6 AHV93196.1 - 0.00028 20.4 0.2 0.0021 17.6 0.3 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_3 PF01381.22 AHV93196.1 - 0.00032 20.7 0.7 0.013 15.5 0.3 2.5 2 0 0 2 2 2 1 Helix-turn-helix HTH_Crp_2 PF13545.6 AHV93196.1 - 0.00043 20.2 0.4 0.0029 17.5 0.2 2.3 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain Trp_repressor PF01371.19 AHV93196.1 - 0.00093 19.3 0.2 0.007 16.5 0.1 2.2 2 0 0 2 2 2 1 Trp repressor protein HTH_5 PF01022.20 AHV93196.1 - 0.0011 18.7 0.0 0.44 10.4 0.0 2.5 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family CENP-B_N PF04218.13 AHV93196.1 - 0.0016 18.0 0.0 1.6 8.5 0.1 2.3 2 0 0 2 2 2 1 CENP-B N-terminal DNA-binding domain LacI PF00356.21 AHV93196.1 - 0.0017 18.1 1.8 0.0046 16.7 0.7 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family Fe_dep_repress PF01325.19 AHV93196.1 - 0.002 18.3 0.0 0.034 14.4 0.1 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_11 PF08279.12 AHV93196.1 - 0.0025 17.7 0.5 0.014 15.3 0.6 2.2 2 0 0 2 2 2 1 HTH domain HTH_psq PF05225.16 AHV93196.1 - 0.0025 17.5 0.5 2.4 8.0 0.3 2.9 3 0 0 3 3 3 1 helix-turn-helix, Psq domain HTH_IclR PF09339.10 AHV93196.1 - 0.0025 17.6 1.2 0.036 13.9 0.6 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain SpoIIID PF12116.8 AHV93196.1 - 0.0027 17.7 0.0 1.1 9.4 0.0 2.4 2 0 0 2 2 2 1 Stage III sporulation protein D HTH_AsnC-type PF13404.6 AHV93196.1 - 0.0036 17.1 2.7 0.045 13.6 1.1 2.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_17 PF12728.7 AHV93196.1 - 0.0043 17.2 0.7 6.1 7.1 0.0 3.3 3 1 0 3 3 3 0 Helix-turn-helix domain RepB PF07506.11 AHV93196.1 - 0.0044 17.1 0.1 0.52 10.4 0.1 2.3 2 0 0 2 2 2 1 RepB plasmid partitioning protein HTH_Tnp_1 PF01527.20 AHV93196.1 - 0.0051 17.1 0.4 0.12 12.7 0.0 2.7 1 1 1 2 2 2 1 Transposase GntR PF00392.21 AHV93196.1 - 0.0052 16.4 0.7 0.5 10.1 0.3 2.5 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_35 PF13693.6 AHV93196.1 - 0.0069 16.4 1.2 0.064 13.3 0.5 2.7 2 1 1 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_10 PF04967.12 AHV93196.1 - 0.0078 16.0 0.1 0.049 13.4 0.2 2.2 2 0 0 2 2 2 1 HTH DNA binding domain HTH_30 PF13556.6 AHV93196.1 - 0.015 15.1 0.1 2 8.3 0.0 2.6 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain UPF0175 PF03683.13 AHV93196.1 - 0.016 14.9 0.5 0.11 12.2 0.1 2.4 2 1 0 2 2 2 0 Uncharacterised protein family (UPF0175) HTH_Tnp_4 PF13613.6 AHV93196.1 - 0.016 14.9 0.1 0.067 12.9 0.0 2.0 2 0 0 2 2 1 0 Helix-turn-helix of DDE superfamily endonuclease HTH_37 PF13744.6 AHV93196.1 - 0.018 15.0 0.1 0.14 12.1 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_36 PF13730.6 AHV93196.1 - 0.02 14.8 0.1 0.56 10.2 0.0 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain KORA PF16509.5 AHV93196.1 - 0.034 14.4 0.1 3.6 8.0 0.0 3.0 3 0 0 3 3 3 0 TrfB plasmid transcriptional repressor MarR PF01047.22 AHV93196.1 - 0.043 13.7 0.1 0.14 12.1 0.1 1.8 2 0 0 2 2 1 0 MarR family DDE_Tnp_IS240 PF13610.6 AHV93196.1 - 0.049 13.9 0.1 0.071 13.3 0.1 1.2 1 0 0 1 1 1 0 DDE domain Crp PF00325.20 AHV93196.1 - 0.051 13.2 3.2 0.062 13.0 0.5 2.5 3 0 0 3 3 3 0 Bacterial regulatory proteins, crp family P22_Cro PF14549.6 AHV93196.1 - 0.052 13.4 1.6 9.6 6.1 0.1 2.5 2 0 0 2 2 2 0 DNA-binding transcriptional regulator Cro DUF746 PF05344.11 AHV93196.1 - 0.085 12.7 0.1 0.98 9.3 0.0 2.3 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) HTH_1 PF00126.27 AHV93196.1 - 0.1 12.6 2.9 4.7 7.2 0.5 2.6 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_26 PF13443.6 AHV93196.1 - 0.17 12.3 0.0 3.6 8.1 0.1 2.8 3 0 0 3 3 3 0 Cro/C1-type HTH DNA-binding domain HTH_8 PF02954.19 AHV93196.1 - 0.19 11.5 0.9 14 5.5 0.7 2.7 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family HTH_Tnp_Tc3_2 PF01498.18 AHV93196.1 - 0.28 11.5 2.6 0.47 10.7 0.1 2.6 3 0 0 3 3 1 0 Transposase HTH_33 PF13592.6 AHV93196.1 - 0.56 9.9 3.1 2.9 7.6 0.1 3.4 4 0 0 4 4 2 0 Winged helix-turn helix MerR PF00376.23 AHV93196.1 - 0.72 9.7 6.8 3.2 7.6 0.0 3.6 4 0 0 4 4 2 0 MerR family regulatory protein SMC_N PF02463.19 AHV93197.1 - 0.15 11.5 0.1 0.18 11.3 0.1 1.1 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain DUF3135 PF11333.8 AHV93197.1 - 3.3 8.0 9.8 7.5 6.9 1.0 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3135) Acyl-CoA_dh_N PF02771.16 AHV93198.1 - 5.7e-34 117.2 1.3 2.5e-33 115.1 0.2 2.2 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_1 PF00441.24 AHV93198.1 - 1e-29 103.7 1.1 1e-29 103.7 1.1 1.6 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 AHV93198.1 - 4.6e-21 74.8 0.0 8.1e-21 74.0 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 AHV93198.1 - 2.5e-06 27.8 0.7 2.5e-06 27.8 0.7 2.0 2 1 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Cytochrom_C PF00034.21 AHV93199.1 - 6.7e-21 75.2 4.2 1.4e-10 42.1 0.3 2.7 2 1 0 2 2 2 2 Cytochrome c Cytochrome_CBB3 PF13442.6 AHV93199.1 - 9.4e-15 54.7 0.7 5.3e-06 26.7 0.1 2.4 2 0 0 2 2 2 2 Cytochrome C oxidase, cbb3-type, subunit III DUF1924 PF09086.11 AHV93199.1 - 6e-06 26.5 0.2 0.023 15.1 0.0 2.4 2 0 0 2 2 2 2 Domain of unknown function (DUF1924) CCP_MauG PF03150.14 AHV93199.1 - 0.00014 22.5 0.0 0.06 14.0 0.0 2.2 1 1 1 2 2 2 2 Di-haem cytochrome c peroxidase Paired_CXXCH_1 PF09699.10 AHV93199.1 - 0.0072 16.1 0.4 1.5 8.6 0.1 2.4 2 0 0 2 2 2 2 Doubled CXXCH motif (Paired_CXXCH_1) Cytochrome_C7 PF14522.6 AHV93199.1 - 0.024 14.6 0.0 4.3 7.4 0.0 2.2 2 0 0 2 2 2 0 Cytochrome c7 and related cytochrome c GSu_C4xC__C2xCH PF09698.10 AHV93199.1 - 0.057 14.2 1.0 4.2 8.2 0.1 2.5 2 0 0 2 2 2 0 Geobacter CxxxxCH...CXXCH motif (GSu_C4xC__C2xCH) Dehyd-heme_bind PF09098.10 AHV93199.1 - 0.13 11.9 0.0 0.46 10.1 0.0 1.8 2 0 0 2 2 2 0 Quinohemoprotein amine dehydrogenase A, alpha subunit, haem binding UvrC_HhH_N PF08459.11 AHV93200.1 - 3.5e-19 69.2 0.1 5e-19 68.7 0.1 1.2 1 0 0 1 1 1 1 UvrC Helix-hairpin-helix N-terminal HHH_5 PF14520.6 AHV93200.1 - 1.1e-09 38.7 0.4 3.8e-09 37.0 0.2 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH PF00633.23 AHV93200.1 - 1.4e-08 34.2 0.3 4.6e-05 23.1 0.1 2.5 2 0 0 2 2 2 2 Helix-hairpin-helix motif HHH_2 PF12826.7 AHV93200.1 - 2.2e-07 30.9 0.1 4.3e-07 29.9 0.1 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_3 PF12836.7 AHV93200.1 - 4.6e-06 26.8 0.3 0.0059 16.8 0.0 2.2 2 0 0 2 2 2 2 Helix-hairpin-helix motif HRDC PF00570.23 AHV93200.1 - 0.016 15.2 0.1 3.7 7.6 0.1 2.4 1 1 1 2 2 2 0 HRDC domain DUF4602 PF15375.6 AHV93200.1 - 0.098 13.0 0.1 0.13 12.6 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4602) XylR_N PF06505.11 AHV93200.1 - 0.13 12.0 1.1 0.24 11.2 0.3 1.9 2 1 0 2 2 2 0 Activator of aromatic catabolism HTH_21 PF13276.6 AHV93201.1 - 5e-12 45.8 8.6 8.2e-12 45.1 8.6 1.3 1 0 0 1 1 1 1 HTH-like domain THDPS_N_2 PF14805.6 AHV93202.1 - 2.2e-27 95.1 0.7 3.5e-27 94.4 0.7 1.3 1 0 0 1 1 1 1 Tetrahydrodipicolinate N-succinyltransferase N-terminal Hexapep_2 PF14602.6 AHV93202.1 - 8.1e-14 51.1 5.7 9.4e-13 47.7 0.1 3.3 3 0 0 3 3 3 1 Hexapeptide repeat of succinyl-transferase Hexapep PF00132.24 AHV93202.1 - 7.1e-13 47.7 7.1 8.4e-06 25.3 0.1 3.4 2 1 0 2 2 2 2 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 AHV93203.1 - 2.6e-23 83.1 6.8 3.4e-23 82.8 6.8 1.3 1 1 0 1 1 1 1 MobA-like NTP transferase domain NTP_transferase PF00483.23 AHV93203.1 - 2.6e-15 56.7 0.0 3.3e-15 56.3 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 AHV93203.1 - 2.2e-10 39.8 0.0 1e-05 25.1 0.6 2.6 1 1 1 2 2 2 2 Bacterial transferase hexapeptide (six repeats) IspD PF01128.19 AHV93203.1 - 2.1e-09 37.5 2.4 3.2e-09 36.9 2.4 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.19 AHV93203.1 - 1.3e-05 25.3 0.0 1.8e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase Nop16 PF09420.10 AHV93203.1 - 0.033 14.2 0.0 0.052 13.6 0.0 1.3 1 0 0 1 1 1 0 Ribosome biogenesis protein Nop16 DUF5076 PF16826.5 AHV93203.1 - 0.051 13.5 0.1 0.11 12.4 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF5076) DUF2064 PF09837.9 AHV93203.1 - 0.059 13.2 0.7 0.14 11.9 0.7 1.6 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2064) LysR_substrate PF03466.20 AHV93204.1 - 8.9e-37 126.5 5.8 8.9e-37 126.5 5.8 1.9 2 0 0 2 2 2 1 LysR substrate binding domain HTH_1 PF00126.27 AHV93204.1 - 5.1e-20 71.2 2.6 5.1e-20 71.2 2.6 1.9 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family MarR_2 PF12802.7 AHV93204.1 - 0.0082 16.0 0.6 0.13 12.1 0.1 2.6 2 1 0 2 2 2 1 MarR family HTH_AsnC-type PF13404.6 AHV93204.1 - 0.041 13.7 0.2 0.19 11.6 0.1 2.3 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 AHV93204.1 - 0.053 13.1 0.0 0.14 11.8 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding 3HCDH PF00725.22 AHV93205.1 - 1.3e-18 67.4 0.0 1.8e-18 66.9 0.0 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 3HCDH_N PF02737.18 AHV93205.1 - 4.9e-05 23.3 0.0 7e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain tRNA-synt_2e PF02091.15 AHV93206.1 - 5e-149 495.1 0.0 5.7e-149 494.9 0.0 1.0 1 0 0 1 1 1 1 Glycyl-tRNA synthetase alpha subunit CPSase_L_D3 PF02787.19 AHV93207.1 - 7.1e-43 145.8 0.0 1.4e-42 144.9 0.0 1.5 1 0 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CPSase_L_D2 PF02786.17 AHV93207.1 - 2.1e-37 128.7 0.1 3.5e-37 128.0 0.1 1.4 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain MGS PF02142.22 AHV93207.1 - 1.1e-21 76.8 0.2 1e-20 73.7 0.5 2.3 2 0 0 2 2 2 1 MGS-like domain ATP-grasp PF02222.22 AHV93207.1 - 8.2e-12 45.0 0.0 1.6e-11 44.0 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.6 AHV93207.1 - 1.1e-10 41.4 0.4 8.3e-10 38.5 0.4 2.4 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.14 AHV93207.1 - 3e-09 37.1 0.0 2.3e-08 34.3 0.0 2.2 2 0 0 2 2 2 1 ATP-grasp domain Dala_Dala_lig_C PF07478.13 AHV93207.1 - 3.3e-08 33.3 0.0 5.5e-08 32.6 0.0 1.3 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp_5 PF13549.6 AHV93207.1 - 0.0018 17.8 0.2 0.0078 15.7 0.0 1.9 2 0 0 2 2 2 1 ATP-grasp domain PreAtp-grasp PF18604.1 AHV93207.1 - 0.067 12.8 0.1 0.27 10.9 0.0 2.0 2 0 0 2 2 2 0 Pre ATP-grasp domain GTP-bdg_M PF16360.5 AHV93208.1 - 1.2e-28 99.5 9.8 2.1e-28 98.7 9.8 1.4 1 0 0 1 1 1 1 GTP-binding GTPase Middle Region GTP-bdg_N PF13167.6 AHV93208.1 - 1.8e-27 95.8 0.0 4.2e-27 94.7 0.0 1.6 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal MMR_HSR1 PF01926.23 AHV93208.1 - 2.8e-21 75.7 0.0 1.4e-20 73.5 0.0 2.0 2 0 0 2 2 2 1 50S ribosome-binding GTPase FeoB_N PF02421.18 AHV93208.1 - 4.2e-06 26.4 0.0 9.8e-06 25.2 0.0 1.7 1 1 0 1 1 1 1 Ferrous iron transport protein B RsgA_GTPase PF03193.16 AHV93208.1 - 8.3e-06 25.8 0.0 0.15 12.0 0.0 2.5 2 0 0 2 2 2 2 RsgA GTPase GTP_EFTU PF00009.27 AHV93208.1 - 6e-05 22.7 0.1 0.036 13.6 0.0 2.4 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain Arf PF00025.21 AHV93208.1 - 0.0017 17.8 0.0 0.19 11.1 0.0 2.2 2 0 0 2 2 2 1 ADP-ribosylation factor family cobW PF02492.19 AHV93208.1 - 0.0036 16.9 0.5 0.26 10.8 0.0 2.6 2 1 1 3 3 3 1 CobW/HypB/UreG, nucleotide-binding domain MMR_HSR1_Xtn PF16897.5 AHV93208.1 - 0.0069 16.4 0.0 0.014 15.4 0.0 1.5 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain AAA_16 PF13191.6 AHV93208.1 - 0.018 15.4 0.3 0.046 14.1 0.3 1.7 1 0 0 1 1 1 0 AAA ATPase domain ABC_tran PF00005.27 AHV93208.1 - 0.039 14.5 0.0 0.19 12.2 0.0 2.1 1 1 1 2 2 2 0 ABC transporter Roc PF08477.13 AHV93208.1 - 0.083 13.1 0.0 3.2 8.0 0.0 2.2 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase Dynamin_N PF00350.23 AHV93208.1 - 0.085 12.9 0.1 0.58 10.2 0.0 2.0 1 1 1 2 2 2 0 Dynamin family FAD_binding_2 PF00890.24 AHV93209.1 - 9.3e-05 21.7 0.0 0.00011 21.5 0.0 1.0 1 0 0 1 1 1 1 FAD binding domain Asparaginase_C PF17763.1 AHV93210.1 - 3.3e-22 78.9 0.3 3.9e-22 78.6 0.3 1.1 1 0 0 1 1 1 1 Glutaminase/Asparaginase C-terminal domain PC_rep PF01851.22 AHV93210.1 - 0.052 14.0 1.7 0.14 12.7 1.0 2.1 2 0 0 2 2 2 0 Proteasome/cyclosome repeat Flg_hook PF02120.16 AHV93211.1 - 2.1e-20 72.4 0.3 2.1e-20 72.4 0.3 1.9 2 0 0 2 2 2 1 Flagellar hook-length control protein FliK rve_3 PF13683.6 AHV93212.1 - 3.8e-12 45.8 0.1 4.7e-12 45.5 0.1 1.1 1 0 0 1 1 1 1 Integrase core domain rve_2 PF13333.6 AHV93212.1 - 0.0067 16.6 0.0 0.0078 16.4 0.0 1.1 1 0 0 1 1 1 1 Integrase core domain HgmA PF04209.13 AHV93213.1 - 3.7e-204 678.3 0.0 4.2e-204 678.1 0.0 1.0 1 0 0 1 1 1 1 homogentisate 1,2-dioxygenase Ribosomal_S18 PF01084.20 AHV93214.1 - 4.6e-22 78.0 0.1 6.4e-22 77.5 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein S18 M-factor PF03855.13 AHV93215.1 - 0.092 12.9 0.2 0.19 11.9 0.2 1.5 1 0 0 1 1 1 0 M-factor Ribosomal_L28 PF00830.19 AHV93216.1 - 3.1e-23 81.7 3.3 3.5e-23 81.6 3.3 1.0 1 0 0 1 1 1 1 Ribosomal L28 family DUF2396 PF09654.10 AHV93216.1 - 0.055 13.6 0.0 0.055 13.6 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2396) Ribonuc_red_lgC PF02867.15 AHV93217.1 - 8.6e-184 611.9 0.0 1.1e-183 611.5 0.0 1.1 1 0 0 1 1 1 1 Ribonucleotide reductase, barrel domain ATP-cone PF03477.16 AHV93217.1 - 1.5e-21 76.7 0.1 1.4e-15 57.6 0.0 3.9 4 0 0 4 4 4 2 ATP cone domain Ribonuc_red_lgN PF00317.21 AHV93217.1 - 1.8e-21 75.9 0.0 4.2e-21 74.7 0.0 1.7 1 0 0 1 1 1 1 Ribonucleotide reductase, all-alpha domain E1-E2_ATPase PF00122.20 AHV93218.1 - 3e-53 180.0 0.1 3e-53 180.0 0.1 2.3 3 0 0 3 3 3 1 E1-E2 ATPase Hydrolase PF00702.26 AHV93218.1 - 1.9e-36 126.4 2.9 3.9e-36 125.3 2.9 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 AHV93218.1 - 1e-05 25.8 0.0 2.5e-05 24.7 0.0 1.7 1 0 0 1 1 1 1 Heavy-metal-associated domain HAD PF12710.7 AHV93218.1 - 0.0011 19.4 0.8 0.0077 16.7 0.3 2.6 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 AHV93218.1 - 0.019 14.7 1.7 0.74 9.5 1.2 2.2 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase Radical_SAM PF04055.21 AHV93219.1 - 1e-15 58.5 0.0 2.2e-15 57.4 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 AHV93219.1 - 0.00056 20.0 0.0 0.0016 18.5 0.0 1.7 1 1 0 1 1 1 1 4Fe-4S single cluster domain DUF3966 PF13110.6 AHV93219.1 - 0.13 12.2 0.0 6.3 6.8 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3966) FGE-sulfatase PF03781.16 AHV93220.1 - 1.5e-31 109.9 0.6 3.4e-28 98.9 0.6 2.5 1 1 0 1 1 1 1 Sulfatase-modifying factor enzyme 1 DinB_2 PF12867.7 AHV93220.1 - 2.1e-12 47.7 7.2 2.1e-12 47.7 7.2 2.7 2 1 0 2 2 2 1 DinB superfamily CoA_transf_3 PF02515.17 AHV93221.1 - 2.9e-136 454.4 0.2 3.4e-136 454.2 0.2 1.0 1 0 0 1 1 1 1 CoA-transferase family III Ring_hydroxyl_A PF00848.19 AHV93222.1 - 1e-13 51.8 0.1 1.2e-13 51.6 0.1 1.1 1 0 0 1 1 1 1 Ring hydroxylating alpha subunit (catalytic domain) DUF2752 PF10825.8 AHV93223.1 - 0.05 13.7 0.7 0.05 13.7 0.7 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2752) DDE_Tnp_ISL3 PF01610.17 AHV93224.1 - 1.1e-64 218.4 1.3 1.5e-64 218.0 0.3 1.6 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV93224.1 - 1.4e-11 43.6 0.1 3.6e-11 42.3 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV93224.1 - 2.3e-08 34.6 10.7 4.7e-08 33.6 10.7 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV93224.1 - 0.0055 16.7 0.2 0.016 15.3 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain SLT_L PF14718.6 AHV93224.1 - 0.015 15.4 1.2 0.015 15.4 1.2 1.8 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain NOB1_Zn_bind PF08772.11 AHV93224.1 - 0.02 15.1 0.3 1.2 9.3 0.0 2.5 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like AidB_N PF18158.1 AHV93225.1 - 2.9e-27 95.5 0.2 3.2e-27 95.4 0.2 1.0 1 0 0 1 1 1 1 Adaptive response protein AidB N-terminal domain RNase_PH PF01138.21 AHV93226.1 - 3.6e-21 76.1 0.0 4.9e-21 75.6 0.0 1.1 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 Tex_N PF09371.10 AHV93227.1 - 1.6e-69 233.2 0.4 2.8e-69 232.5 0.4 1.4 1 0 0 1 1 1 1 Tex-like protein N-terminal domain Tex_YqgF PF16921.5 AHV93227.1 - 1e-52 177.9 0.1 1.9e-52 177.0 0.1 1.5 1 0 0 1 1 1 1 Tex protein YqgF-like domain HHH_3 PF12836.7 AHV93227.1 - 9.4e-26 89.9 0.0 2.4e-25 88.6 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_9 PF17674.1 AHV93227.1 - 1.2e-23 83.8 0.0 6.7e-23 81.4 0.0 2.4 2 0 0 2 2 2 1 HHH domain S1 PF00575.23 AHV93227.1 - 6.3e-21 74.5 1.1 1.2e-20 73.6 1.1 1.5 1 0 0 1 1 1 1 S1 RNA binding domain YqgF PF14639.6 AHV93227.1 - 6.1e-09 35.8 0.0 1.4e-08 34.7 0.0 1.6 1 0 0 1 1 1 1 Holliday-junction resolvase-like of SPT6 HHH_7 PF14635.6 AHV93227.1 - 3.3e-05 24.2 0.0 7.3e-05 23.1 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif DUF460 PF04312.13 AHV93227.1 - 0.042 13.5 0.0 0.089 12.5 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF460) RuvX PF03652.15 AHV93227.1 - 0.077 13.4 0.0 0.21 11.9 0.0 1.8 1 0 0 1 1 1 0 Holliday junction resolvase RNase_II_C_S1 PF18614.1 AHV93227.1 - 3.2 7.8 9.7 0.38 10.7 4.0 2.4 2 1 0 2 2 2 0 RNase II-type exonuclease C-terminal S1 domain DEAD_2 PF06733.15 AHV93228.1 - 2.2e-12 47.0 0.0 6e-12 45.5 0.0 1.7 1 1 1 2 2 2 1 DEAD_2 DEAD PF00270.29 AHV93228.1 - 4.7e-05 23.2 0.0 0.0015 18.4 0.0 2.1 2 0 0 2 2 2 1 DEAD/DEAH box helicase ResIII PF04851.15 AHV93228.1 - 0.00044 20.3 0.0 0.15 12.0 0.0 2.3 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit SNF2_N PF00176.23 AHV93228.1 - 0.0042 15.9 0.0 0.0073 15.1 0.0 1.3 1 0 0 1 1 1 1 SNF2 family N-terminal domain AAA_22 PF13401.6 AHV93228.1 - 0.034 14.4 0.4 1.4 9.2 0.0 2.9 2 1 1 3 3 3 0 AAA domain COX_ARM PF06481.14 AHV93229.1 - 6.1e-20 70.8 0.0 1.3e-19 69.8 0.0 1.6 2 0 0 2 2 2 1 COX Aromatic Rich Motif COX2 PF00116.20 AHV93229.1 - 6e-07 29.4 0.1 1.5e-06 28.1 0.0 1.7 1 1 1 2 2 2 1 Cytochrome C oxidase subunit II, periplasmic domain DUF4079 PF13301.6 AHV93229.1 - 0.047 13.8 0.2 0.078 13.1 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4079) DUF3149 PF11346.8 AHV93229.1 - 0.058 13.0 0.2 0.15 11.7 0.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3149) Wzy_C PF04932.15 AHV93229.1 - 0.077 12.6 0.4 0.088 12.4 0.4 1.2 1 0 0 1 1 1 0 O-Antigen ligase DUF2568 PF10823.8 AHV93229.1 - 0.095 13.0 5.2 0.21 11.9 5.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2568) COX2_TM PF02790.15 AHV93229.1 - 0.17 12.1 2.7 0.3 11.3 2.7 1.3 1 0 0 1 1 1 0 Cytochrome C oxidase subunit II, transmembrane domain MgsA_C PF12002.8 AHV93231.1 - 7.8e-67 224.4 1.3 8.7e-67 224.2 0.3 1.6 2 0 0 2 2 2 1 MgsA AAA+ ATPase C terminal AAA_assoc_2 PF16193.5 AHV93231.1 - 1.4e-22 79.8 0.3 4.8e-22 78.1 0.2 2.0 2 0 0 2 2 2 1 AAA C-terminal domain AAA PF00004.29 AHV93231.1 - 1.9e-12 47.7 0.0 3.8e-12 46.8 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 AHV93231.1 - 8.2e-12 45.2 0.0 2.8e-11 43.4 0.0 1.8 1 1 1 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 AHV93231.1 - 1.2e-05 25.8 3.2 0.0014 19.0 0.0 3.4 2 2 0 3 3 3 1 AAA ATPase domain Mg_chelatase PF01078.21 AHV93231.1 - 1.6e-05 24.4 0.0 0.0031 16.9 0.0 2.3 1 1 1 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_22 PF13401.6 AHV93231.1 - 2.5e-05 24.6 0.0 0.0029 17.9 0.0 2.7 1 1 1 2 2 2 1 AAA domain AAA_5 PF07728.14 AHV93231.1 - 3.2e-05 24.0 0.1 0.0048 16.9 0.0 2.9 1 1 1 2 2 2 1 AAA domain (dynein-related subfamily) AAA_14 PF13173.6 AHV93231.1 - 0.00013 22.0 0.0 0.00023 21.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain Sigma54_activat PF00158.26 AHV93231.1 - 0.00026 20.7 0.0 0.033 13.9 0.0 2.3 2 0 0 2 2 2 1 Sigma-54 interaction domain IstB_IS21 PF01695.17 AHV93231.1 - 0.0021 17.8 0.0 0.0044 16.8 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_3 PF07726.11 AHV93231.1 - 0.01 15.7 0.0 0.027 14.3 0.0 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 AHV93231.1 - 0.011 15.8 0.0 0.032 14.4 0.0 2.0 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 AHV93231.1 - 0.03 14.0 0.0 0.054 13.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 AHV93231.1 - 0.031 14.8 0.0 0.1 13.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain ResIII PF04851.15 AHV93231.1 - 0.046 13.7 0.0 5.4 7.0 0.0 2.2 1 1 1 2 2 2 0 Type III restriction enzyme, res subunit RNA_helicase PF00910.22 AHV93231.1 - 0.057 13.8 0.0 0.12 12.8 0.0 1.6 1 0 0 1 1 1 0 RNA helicase ClpB_D2-small PF10431.9 AHV93231.1 - 0.1 12.6 0.7 0.94 9.6 0.1 2.3 2 0 0 2 2 2 0 C-terminal, D2-small domain, of ClpB protein RsgA_GTPase PF03193.16 AHV93231.1 - 0.11 12.4 0.0 0.2 11.5 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_2 PF07724.14 AHV93231.1 - 0.13 12.4 0.0 0.25 11.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) AAA_17 PF13207.6 AHV93231.1 - 0.14 12.6 0.0 0.27 11.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain TamB PF04357.13 AHV93233.1 - 1.8e-36 126.2 5.9 1.2e-35 123.5 0.9 2.4 2 1 0 2 2 2 2 TamB, inner membrane protein subunit of TAM complex ABC_tran PF00005.27 AHV93234.1 - 1.5e-32 113.0 0.0 2e-32 112.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 AHV93234.1 - 4.5e-11 43.1 1.2 5.9e-08 32.9 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 AHV93234.1 - 0.0024 18.4 0.0 0.0034 17.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 AHV93234.1 - 0.0027 17.2 0.0 1.2 8.6 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain KdpD PF02702.17 AHV93234.1 - 0.0093 15.5 0.0 0.014 14.9 0.0 1.2 1 0 0 1 1 1 1 Osmosensitive K+ channel His kinase sensor domain AAA_15 PF13175.6 AHV93234.1 - 0.0098 15.6 0.0 2.7 7.6 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.6 AHV93234.1 - 0.015 15.0 0.0 0.029 14.1 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain CysG_dimeriser PF10414.9 AHV93234.1 - 0.02 14.6 2.3 0.49 10.1 0.0 3.4 3 1 1 4 4 4 0 Sirohaem synthase dimerisation region AAA_16 PF13191.6 AHV93234.1 - 0.071 13.5 0.0 0.19 12.1 0.0 1.7 2 1 0 2 2 2 0 AAA ATPase domain AAA_33 PF13671.6 AHV93234.1 - 0.12 12.6 0.0 0.25 11.5 0.0 1.7 1 1 0 1 1 1 0 AAA domain Lipoprotein_9 PF03180.14 AHV93235.1 - 4.9e-99 330.2 0.1 5.7e-99 330.0 0.1 1.0 1 0 0 1 1 1 1 NLPA lipoprotein PepSY_2 PF13670.6 AHV93235.1 - 0.074 13.1 1.2 0.2 11.7 1.1 1.8 1 1 0 1 1 1 0 Peptidase propeptide and YPEB domain Oxidored_q2 PF00420.24 AHV93236.1 - 6.2e-25 86.9 9.6 7.5e-25 86.6 9.6 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L PEP-CTERM PF07589.11 AHV93236.1 - 1.8 8.7 4.3 1.9 8.7 0.3 2.6 2 0 0 2 2 2 0 PEP-CTERM motif Gram_pos_anchor PF00746.21 AHV93236.1 - 2.9 7.9 6.0 4.1 7.4 0.2 2.4 2 0 0 2 2 2 0 LPXTG cell wall anchor motif Herpes_LMP1 PF05297.11 AHV93236.1 - 3.6 6.7 9.6 4.4 6.4 9.6 1.1 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) TssN PF17555.2 AHV93236.1 - 6.3 6.1 9.8 7.7 5.8 9.8 1.0 1 0 0 1 1 1 0 Type VI secretion system, TssN Tetraspanin PF00335.20 AHV93236.1 - 6.5 6.4 17.4 0.13 11.9 7.0 2.0 1 1 1 2 2 2 0 Tetraspanin family Hexapep PF00132.24 AHV93237.1 - 3.2e-11 42.5 5.1 1.2e-06 28.0 0.9 2.8 2 0 0 2 2 2 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 AHV93237.1 - 0.0011 18.6 0.9 0.0011 18.6 0.9 2.9 2 1 0 2 2 2 1 Hexapeptide repeat of succinyl-transferase SATase_N PF06426.14 AHV93237.1 - 0.0067 16.8 0.0 0.013 15.9 0.0 1.4 1 0 0 1 1 1 1 Serine acetyltransferase, N-terminal RQC PF09382.10 AHV93238.1 - 3.6e-38 129.8 0.0 6.7e-38 129.0 0.0 1.4 1 0 0 1 1 1 1 RQC domain HRDC PF00570.23 AHV93238.1 - 1e-22 79.9 0.0 5.8e-22 77.5 0.0 2.2 2 0 0 2 2 2 1 HRDC domain Helicase_C PF00271.31 AHV93238.1 - 1.1e-18 67.6 0.0 6.7e-16 58.6 0.0 2.4 2 0 0 2 2 2 2 Helicase conserved C-terminal domain RecQ_Zn_bind PF16124.5 AHV93238.1 - 2.1e-17 63.6 1.2 4.7e-17 62.5 1.2 1.7 1 0 0 1 1 1 1 RecQ zinc-binding DEAD PF00270.29 AHV93238.1 - 7.3e-17 61.7 0.0 1.1e-16 61.1 0.0 1.3 1 0 0 1 1 1 1 DEAD/DEAH box helicase DDE_Tnp_IS66 PF03050.14 AHV93239.1 - 5.6e-97 324.6 0.4 1.1e-96 323.6 0.0 1.6 2 0 0 2 2 2 1 Transposase IS66 family DDE_Tnp_IS66_C PF13817.6 AHV93239.1 - 4.2e-17 62.1 0.1 1.2e-16 60.6 0.1 1.9 1 0 0 1 1 1 1 IS66 C-terminal element LZ_Tnp_IS66 PF13007.7 AHV93239.1 - 5e-15 56.0 2.0 5e-15 56.0 2.0 2.7 3 0 0 3 3 3 1 Transposase C of IS166 homeodomain zf-IS66 PF13005.7 AHV93239.1 - 5.1e-13 49.2 3.8 1.4e-12 47.8 3.8 1.8 1 0 0 1 1 1 1 zinc-finger binding domain of transposase IS66 Na_Ca_ex PF01699.24 AHV93240.1 - 1.3e-12 47.9 8.2 1.6e-12 47.6 8.2 1.0 1 0 0 1 1 1 1 Sodium/calcium exchanger protein LysR_substrate PF03466.20 AHV93241.1 - 1.2e-28 99.9 6.6 1.9e-28 99.2 6.6 1.3 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 AHV93241.1 - 1.3e-17 63.4 0.4 3.3e-17 62.2 0.4 1.7 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family LysR_substrate PF03466.20 AHV93243.1 - 1.2e-43 148.9 7.3 1.7e-43 148.5 7.3 1.2 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 AHV93243.1 - 1.8e-19 69.4 0.9 1.8e-19 69.4 0.9 2.3 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family PBP_like PF12727.7 AHV93243.1 - 0.12 11.5 0.0 3 6.9 0.0 2.2 1 1 0 1 1 1 0 PBP superfamily domain DUF2863 PF11062.8 AHV93244.1 - 9e-170 564.4 0.2 1e-169 564.2 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2863) Haem_degrading PF03928.14 AHV93245.1 - 1.4e-27 96.1 0.9 1.7e-27 95.8 0.9 1.1 1 0 0 1 1 1 1 Haem-degrading RDD PF06271.12 AHV93246.1 - 3.7e-15 56.4 4.8 5.1e-15 55.9 4.8 1.2 1 0 0 1 1 1 1 RDD family Pex2_Pex12 PF04757.14 AHV93246.1 - 0.039 13.5 0.1 0.056 13.0 0.1 1.2 1 0 0 1 1 1 0 Pex2 / Pex12 amino terminal region Ribosomal_S20p PF01649.18 AHV93247.1 - 5.2e-26 91.1 16.2 5.8e-26 91.0 16.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S20 UPF0253 PF06786.12 AHV93247.1 - 0.067 13.5 0.5 0.095 13.0 0.5 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0253) nsp8 PF08717.10 AHV93247.1 - 2.2 8.1 7.4 1.3 8.8 0.8 2.0 1 1 1 2 2 2 0 nsp8 replicase GMC_oxred_C PF05199.13 AHV93248.1 - 7.7e-19 68.6 3.5 1.4e-18 67.8 0.9 2.6 2 1 0 2 2 2 1 GMC oxidoreductase GMC_oxred_N PF00732.19 AHV93248.1 - 6.4e-10 38.9 0.1 1.6e-07 31.0 0.1 2.3 2 0 0 2 2 2 2 GMC oxidoreductase DAO PF01266.24 AHV93248.1 - 3.1e-08 33.6 0.2 1.1e-05 25.2 0.0 2.5 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox PF00070.27 AHV93248.1 - 0.003 18.1 1.7 0.052 14.1 0.5 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 AHV93248.1 - 0.0034 17.6 1.2 0.012 15.8 1.2 2.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 AHV93248.1 - 0.008 15.4 0.4 0.016 14.5 0.1 1.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 AHV93248.1 - 0.019 14.8 0.2 0.037 13.9 0.2 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Lycopene_cycl PF05834.12 AHV93248.1 - 0.069 12.2 0.2 0.12 11.4 0.2 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein HI0933_like PF03486.14 AHV93248.1 - 0.075 11.7 1.4 0.13 10.9 1.4 1.3 1 0 0 1 1 1 0 HI0933-like protein FAD_oxidored PF12831.7 AHV93248.1 - 0.075 12.4 1.7 2.6 7.3 0.2 2.2 2 0 0 2 2 2 0 FAD dependent oxidoreductase ApbA PF02558.16 AHV93248.1 - 0.11 12.1 2.0 0.23 11.1 0.5 2.0 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA Thi4 PF01946.17 AHV93248.1 - 0.13 11.5 0.2 0.21 10.8 0.2 1.3 1 0 0 1 1 1 0 Thi4 family FAD_binding_3 PF01494.19 AHV93248.1 - 0.49 9.6 3.5 0.19 11.0 1.0 1.5 2 0 0 2 2 2 0 FAD binding domain cobW PF02492.19 AHV93249.1 - 1.5e-51 174.5 0.0 1.9e-51 174.2 0.0 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CobW_C PF07683.14 AHV93249.1 - 9.2e-22 76.8 0.0 1.9e-21 75.8 0.0 1.6 1 0 0 1 1 1 1 Cobalamin synthesis protein cobW C-terminal domain TsaE PF02367.17 AHV93249.1 - 0.0039 17.2 0.1 0.008 16.2 0.1 1.4 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_16 PF13191.6 AHV93249.1 - 0.0061 17.0 0.0 0.011 16.1 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 AHV93249.1 - 0.0074 16.6 0.0 0.014 15.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain MeaB PF03308.16 AHV93249.1 - 0.024 13.6 0.1 0.081 11.9 0.0 1.7 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Zeta_toxin PF06414.12 AHV93249.1 - 0.034 13.4 0.2 0.22 10.8 0.0 2.1 2 0 0 2 2 2 0 Zeta toxin RsgA_GTPase PF03193.16 AHV93249.1 - 0.051 13.5 0.0 2 8.3 0.0 2.2 2 0 0 2 2 2 0 RsgA GTPase MobB PF03205.14 AHV93249.1 - 0.062 13.2 0.0 0.062 13.2 0.0 1.9 2 0 0 2 2 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_24 PF13479.6 AHV93249.1 - 0.063 13.0 0.0 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain GTP_EFTU PF00009.27 AHV93249.1 - 0.085 12.4 0.0 11 5.5 0.0 2.2 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain NTPase_1 PF03266.15 AHV93249.1 - 0.11 12.4 0.2 0.18 11.7 0.2 1.3 1 0 0 1 1 1 0 NTPase AAA_33 PF13671.6 AHV93249.1 - 0.14 12.3 0.0 0.22 11.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 AHV93249.1 - 0.18 11.7 0.1 0.3 11.0 0.1 1.3 1 0 0 1 1 1 0 NACHT domain SRPRB PF09439.10 AHV93249.1 - 0.21 11.0 0.0 0.33 10.4 0.0 1.3 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit TctC PF03401.14 AHV93250.1 - 2.6e-49 167.7 0.0 3.2e-49 167.5 0.0 1.1 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor 2CSK_N PF08521.10 AHV93251.1 - 6.4e-35 120.3 0.2 1.3e-34 119.2 0.2 1.6 1 0 0 1 1 1 1 Two-component sensor kinase N-terminal HATPase_c PF02518.26 AHV93251.1 - 1.2e-21 77.3 0.0 1.9e-21 76.6 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 AHV93251.1 - 2.9e-14 52.9 2.8 5.4e-14 52.0 1.0 2.4 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.6 AHV93251.1 - 1.6e-06 28.1 0.0 3.7e-06 26.9 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HAMP PF00672.25 AHV93251.1 - 0.00028 21.2 2.7 0.00036 20.8 0.7 2.3 2 0 0 2 2 2 1 HAMP domain HATPase_c_5 PF14501.6 AHV93251.1 - 0.0013 18.6 0.0 0.0024 17.8 0.0 1.3 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.6 AHV93251.1 - 0.2 11.5 0.0 0.51 10.2 0.0 1.6 2 0 0 2 2 2 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 AHV93253.1 - 1.5e-05 25.0 0.5 3.4e-05 23.8 0.5 1.6 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c PF02518.26 AHV93253.1 - 0.0013 19.2 0.0 0.002 18.6 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 AHV93253.1 - 0.032 14.2 0.0 0.065 13.2 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain CHASE3 PF05227.13 AHV93253.1 - 0.086 12.8 3.4 0.24 11.3 0.5 2.5 2 1 1 3 3 3 0 CHASE3 domain COMP PF11598.8 AHV93253.1 - 0.53 10.8 9.3 0.94 10.0 0.5 2.8 3 0 0 3 3 3 0 Cartilage oligomeric matrix protein SlyX PF04102.12 AHV93253.1 - 3.2 8.4 4.7 14 6.3 0.5 2.8 1 1 2 3 3 3 0 SlyX Trypsin_2 PF13365.6 AHV93254.1 - 4e-33 115.4 2.9 6.1e-33 114.8 2.9 1.3 1 0 0 1 1 1 1 Trypsin-like peptidase domain PDZ_2 PF13180.6 AHV93254.1 - 9.6e-19 67.5 0.2 8.6e-17 61.2 0.1 2.5 2 0 0 2 2 2 1 PDZ domain Trypsin PF00089.26 AHV93254.1 - 9.5e-18 64.8 0.1 1.8e-17 63.9 0.1 1.4 1 0 0 1 1 1 1 Trypsin PDZ PF00595.24 AHV93254.1 - 1.1e-13 51.3 0.9 1.7e-11 44.3 0.1 2.9 2 1 1 3 3 3 1 PDZ domain PDZ_6 PF17820.1 AHV93254.1 - 1.5e-11 43.9 2.0 1.7e-09 37.3 0.6 2.5 2 0 0 2 2 2 2 PDZ domain Peptidase_S46 PF10459.9 AHV93254.1 - 9.2e-05 21.3 0.5 0.23 10.1 0.3 2.1 2 0 0 2 2 2 2 Peptidase S46 Peptidase_S32 PF05579.13 AHV93254.1 - 0.011 14.9 1.8 0.34 10.0 0.2 2.3 2 0 0 2 2 2 0 Equine arteritis virus serine endopeptidase S32 PDZ_1 PF12812.7 AHV93254.1 - 0.093 12.8 0.0 0.22 11.6 0.0 1.6 1 0 0 1 1 1 0 PDZ-like domain DUF3971 PF13116.6 AHV93255.1 - 5.7e-24 85.2 0.0 9.8e-24 84.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function DDE_Tnp_ISL3 PF01610.17 AHV93256.1 - 7.9e-65 218.9 1.2 1.1e-64 218.4 0.3 1.6 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV93256.1 - 1.4e-11 43.6 0.1 3.6e-11 42.3 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV93256.1 - 5.3e-09 36.6 11.2 1.1e-08 35.6 11.2 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV93256.1 - 0.0056 16.7 0.2 0.016 15.3 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain SLT_L PF14718.6 AHV93256.1 - 0.016 15.3 1.5 0.016 15.3 1.5 1.8 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain NOB1_Zn_bind PF08772.11 AHV93256.1 - 0.017 15.2 0.2 1.2 9.3 0.0 2.5 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-IS66 PF13005.7 AHV93256.1 - 8.2 6.9 9.6 3.6 8.1 6.6 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 DUF839 PF05787.13 AHV93257.1 - 1.3e-100 338.1 4.5 1.5e-100 337.8 4.5 1.0 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF839) ABC_tran PF00005.27 AHV93258.1 - 4e-29 101.9 0.0 5.9e-29 101.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter RsgA_GTPase PF03193.16 AHV93258.1 - 4.2e-05 23.5 0.0 7e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 AHV93258.1 - 0.00021 21.7 0.0 0.00036 20.9 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_21 PF13304.6 AHV93258.1 - 0.0012 18.7 0.2 0.041 13.7 0.0 2.1 1 1 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_28 PF13521.6 AHV93258.1 - 0.0015 18.8 0.1 0.093 13.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 AHV93258.1 - 0.0015 18.2 0.0 0.0038 16.9 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 AHV93258.1 - 0.0043 17.3 0.0 0.0083 16.4 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 AHV93258.1 - 0.0065 16.9 0.0 0.038 14.4 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MMR_HSR1 PF01926.23 AHV93258.1 - 0.0093 16.0 0.0 0.019 15.0 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase AAA_25 PF13481.6 AHV93258.1 - 0.021 14.4 0.0 0.037 13.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 AHV93258.1 - 0.045 13.7 0.1 0.24 11.3 0.0 1.9 2 0 0 2 2 2 0 NACHT domain AAA_23 PF13476.6 AHV93258.1 - 0.047 14.2 0.0 0.069 13.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 AHV93258.1 - 0.048 13.6 0.0 0.093 12.6 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain SMC_N PF02463.19 AHV93258.1 - 0.1 12.0 0.0 1.3 8.4 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain NB-ARC PF00931.22 AHV93258.1 - 0.13 11.4 0.0 0.23 10.6 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain RNA_helicase PF00910.22 AHV93258.1 - 0.14 12.6 0.0 0.23 11.8 0.0 1.4 1 0 0 1 1 1 0 RNA helicase FeoB_N PF02421.18 AHV93258.1 - 0.16 11.5 0.0 0.27 10.8 0.0 1.3 1 0 0 1 1 1 0 Ferrous iron transport protein B ATPase_2 PF01637.18 AHV93258.1 - 0.22 11.4 0.0 0.47 10.3 0.0 1.5 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea rve_3 PF13683.6 AHV93259.1 - 3.8e-12 45.8 0.1 4.7e-12 45.5 0.1 1.1 1 0 0 1 1 1 1 Integrase core domain rve_2 PF13333.6 AHV93259.1 - 0.0067 16.6 0.0 0.0078 16.4 0.0 1.1 1 0 0 1 1 1 1 Integrase core domain Peripla_BP_6 PF13458.6 AHV93260.1 - 3.3e-29 102.6 0.2 3.9e-29 102.4 0.2 1.0 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.28 AHV93260.1 - 2.5e-13 49.8 0.0 3.6e-13 49.3 0.0 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.6 AHV93260.1 - 3.5e-09 36.1 0.0 4.9e-09 35.6 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein domain SBP_bac_11 PF13531.6 AHV93260.1 - 0.019 14.7 0.1 0.025 14.3 0.1 1.1 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein ZnuA PF01297.17 AHV93260.1 - 0.07 12.5 0.0 0.15 11.5 0.0 1.5 2 0 0 2 2 2 0 Zinc-uptake complex component A periplasmic BPD_transp_2 PF02653.16 AHV93261.1 - 3.2e-38 131.4 42.0 4.5e-38 130.9 42.0 1.2 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Cytochrome-c551 PF10643.9 AHV93261.1 - 1.3 8.6 4.4 2.6 7.6 4.4 1.5 1 0 0 1 1 1 0 Photosystem P840 reaction-centre cytochrome c-551 rve PF00665.26 AHV93262.1 - 4.8e-20 71.9 0.3 1.5e-19 70.3 0.0 1.7 2 0 0 2 2 2 1 Integrase core domain rve_3 PF13683.6 AHV93262.1 - 4.6e-19 68.0 3.1 6.6e-19 67.5 3.1 1.2 1 0 0 1 1 1 1 Integrase core domain PG_binding_2 PF08823.11 AHV93262.1 - 0.021 15.1 0.0 0.03 14.6 0.0 1.3 1 0 0 1 1 1 0 Putative peptidoglycan binding domain Peripla_BP_6 PF13458.6 AHV93263.1 - 2.5e-14 53.7 0.2 2.8e-14 53.6 0.2 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 AHV93263.1 - 0.064 12.2 0.0 0.077 12.0 0.0 1.1 1 0 0 1 1 1 0 Periplasmic binding protein domain BPD_transp_1 PF00528.22 AHV93264.1 - 4.4e-17 62.4 14.9 2.4e-16 60.0 13.3 1.9 1 1 1 2 2 2 2 Binding-protein-dependent transport system inner membrane component PHO4 PF01384.20 AHV93264.1 - 0.01 14.9 5.3 0.013 14.6 5.3 1.1 1 0 0 1 1 1 0 Phosphate transporter family rve_3 PF13683.6 AHV93265.1 - 4e-26 90.6 0.1 4.7e-26 90.3 0.1 1.1 1 0 0 1 1 1 1 Integrase core domain rve_2 PF13333.6 AHV93265.1 - 5.8e-08 32.8 0.0 7.4e-08 32.5 0.0 1.1 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AHV93265.1 - 0.003 17.8 0.0 0.0035 17.6 0.0 1.1 1 0 0 1 1 1 1 DDE domain T2SSF PF00482.23 AHV93266.1 - 1.9e-11 44.0 0.5 1.9e-11 44.0 0.5 2.6 3 0 0 3 3 3 1 Type II secretion system (T2SS), protein F GtrA PF04138.14 AHV93266.1 - 0.16 12.2 0.2 0.16 12.2 0.2 2.4 3 0 0 3 3 3 0 GtrA-like protein TarH PF02203.15 AHV93266.1 - 2 8.3 6.0 4.7 7.1 2.8 2.4 2 0 0 2 2 2 0 Tar ligand binding domain homologue TctC PF03401.14 AHV93267.1 - 2.7e-68 230.0 0.0 3.1e-68 229.8 0.0 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor SpoU_methylase PF00588.19 AHV93268.1 - 1e-28 100.3 0.0 1.1e-28 100.1 0.0 1.0 1 0 0 1 1 1 1 SpoU rRNA Methylase family Malate_DH PF12434.8 AHV93268.1 - 0.08 13.0 0.0 0.16 12.1 0.0 1.4 1 0 0 1 1 1 0 Malate dehydrogenase enzyme Pribosyltran PF00156.27 AHV93269.1 - 1.3e-14 54.0 0.0 1.9e-14 53.5 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain DHBP_synthase PF00926.19 AHV93269.1 - 0.0018 17.8 0.0 0.0027 17.3 0.0 1.2 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase Peptidase_M90 PF06167.12 AHV93270.1 - 1.4e-77 260.6 0.0 1.7e-77 260.4 0.0 1.0 1 0 0 1 1 1 1 Glucose-regulated metallo-peptidase M90 IspA PF04279.15 AHV93272.1 - 2e-65 220.3 16.7 2.2e-65 220.1 16.7 1.0 1 0 0 1 1 1 1 Intracellular septation protein A MerC PF03203.14 AHV93272.1 - 1 9.8 14.6 17 5.9 14.6 2.1 1 1 0 1 1 1 0 MerC mercury resistance protein SBP_bac_5 PF00496.22 AHV93273.1 - 1.3e-96 323.9 1.3 1.7e-96 323.5 1.3 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle DUF2063 PF09836.9 AHV93275.1 - 3.3e-11 43.3 0.1 3.6e-11 43.1 0.1 1.0 1 0 0 1 1 1 1 Putative DNA-binding domain MR_MLE_C PF13378.6 AHV93276.1 - 9e-53 179.1 0.0 1.2e-52 178.6 0.0 1.1 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 AHV93276.1 - 1.5e-22 80.0 0.0 2.5e-22 79.3 0.0 1.3 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Phage_TAC_4 PF08748.11 AHV93276.1 - 0.033 14.5 0.0 0.073 13.4 0.0 1.5 1 0 0 1 1 1 0 Phage tail assembly chaperone Mur_ligase_M PF08245.12 AHV93277.1 - 7.5e-29 101.1 0.0 1e-28 100.6 0.0 1.2 1 0 0 1 1 1 1 Mur ligase middle domain Mur_ligase PF01225.25 AHV93277.1 - 6.2e-26 90.6 0.6 1.9e-25 89.0 0.6 1.9 1 0 0 1 1 1 1 Mur ligase family, catalytic domain Mur_ligase_C PF02875.21 AHV93277.1 - 3e-19 69.1 0.0 1.4e-18 66.9 0.0 2.2 2 0 0 2 2 2 1 Mur ligase family, glutamate ligase domain Peptidase_S26 PF10502.9 AHV93277.1 - 0.088 12.6 0.1 0.2 11.4 0.1 1.5 1 0 0 1 1 1 0 Signal peptidase, peptidase S26 Ribonuc_red_sm PF00268.21 AHV93278.1 - 1.6e-86 290.2 0.1 2.1e-86 289.9 0.1 1.1 1 0 0 1 1 1 1 Ribonucleotide reductase, small chain PPP5 PF08321.12 AHV93278.1 - 0.00068 19.9 0.1 0.0018 18.6 0.0 1.7 2 0 0 2 2 2 1 PPP5 TPR repeat region DUF455 PF04305.14 AHV93278.1 - 0.1 12.1 0.0 0.18 11.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF455) PepSY_TM PF03929.16 AHV93279.1 - 8.2e-55 186.5 16.2 1.4e-54 185.8 16.2 1.3 1 0 0 1 1 1 1 PepSY-associated TM region DUF4405 PF14358.6 AHV93279.1 - 0.4 11.3 11.3 0.043 14.4 4.8 3.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4405) DUF2484 PF10658.9 AHV93279.1 - 0.88 9.9 9.9 1.9 8.9 1.7 3.5 2 1 0 2 2 2 0 Protein of unknown function (DUF2484) GPI2 PF06432.11 AHV93279.1 - 1.9 7.9 5.9 1.6 8.1 0.6 2.5 2 1 0 2 2 2 0 Phosphatidylinositol N-acetylglucosaminyltransferase T2SSE PF00437.20 AHV93280.1 - 2.6e-76 256.3 0.0 3.8e-76 255.8 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_16 PF13191.6 AHV93280.1 - 0.0014 19.1 0.2 0.0053 17.2 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_28 PF13521.6 AHV93280.1 - 0.0064 16.7 0.0 0.012 15.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_7 PF12775.7 AHV93280.1 - 0.017 14.6 0.0 0.03 13.8 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region Dynamin_N PF00350.23 AHV93280.1 - 0.033 14.2 0.0 0.052 13.6 0.0 1.3 1 0 0 1 1 1 0 Dynamin family FtsK_SpoIIIE PF01580.18 AHV93280.1 - 0.038 13.3 0.0 0.074 12.4 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_29 PF13555.6 AHV93280.1 - 0.042 13.6 0.0 0.087 12.6 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Zeta_toxin PF06414.12 AHV93280.1 - 0.066 12.5 0.0 0.25 10.6 0.0 1.9 2 0 0 2 2 2 0 Zeta toxin Mg_chelatase PF01078.21 AHV93280.1 - 0.13 11.6 0.0 0.21 10.9 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI ZipA_C PF04354.13 AHV93281.1 - 1e-06 28.6 0.0 2.4e-06 27.4 0.0 1.7 2 0 0 2 2 2 1 ZipA, C-terminal FtsZ-binding domain NepR PF18557.1 AHV93281.1 - 0.039 13.6 0.1 0.08 12.6 0.1 1.6 1 0 0 1 1 1 0 Anti-sigma factor NepR CD34_antigen PF06365.12 AHV93281.1 - 0.13 11.8 0.0 0.2 11.2 0.0 1.2 1 0 0 1 1 1 0 CD34/Podocalyxin family LSR PF05624.14 AHV93281.1 - 0.98 9.5 2.1 1.9 8.6 2.1 1.3 1 0 0 1 1 1 0 Lipolysis stimulated receptor (LSR) Ribosomal_L36 PF00444.18 AHV93282.1 - 4.5e-19 68.4 3.7 5.4e-19 68.1 3.7 1.1 1 0 0 1 1 1 1 Ribosomal protein L36 tRNA-synt_2b PF00587.25 AHV93283.1 - 7.3e-33 114.0 0.0 1.1e-32 113.4 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.22 AHV93283.1 - 1.8e-26 92.5 2.1 3e-26 91.8 2.1 1.4 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain JIP_LZII PF16471.5 AHV93283.1 - 0.0048 17.0 2.5 0.36 11.0 0.5 2.6 1 1 1 2 2 2 1 JNK-interacting protein leucine zipper II Cep57_MT_bd PF06657.13 AHV93283.1 - 0.023 15.2 1.5 0.6 10.6 0.2 2.7 2 0 0 2 2 2 0 Centrosome microtubule-binding domain of Cep57 DUF4201 PF13870.6 AHV93283.1 - 0.1 12.3 0.3 0.49 10.1 0.3 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4201) FapA PF03961.13 AHV93283.1 - 0.14 10.8 0.1 0.2 10.2 0.1 1.1 1 0 0 1 1 1 0 Flagellar Assembly Protein A Uso1_p115_C PF04871.13 AHV93283.1 - 0.17 12.3 5.0 0.31 11.4 5.0 1.4 1 0 0 1 1 1 0 Uso1 / p115 like vesicle tethering protein, C terminal region Spectrin PF00435.21 AHV93283.1 - 0.36 11.3 4.2 1.9 9.0 4.3 2.1 1 1 1 2 2 2 0 Spectrin repeat ABC_tran_CTD PF16326.5 AHV93283.1 - 0.47 10.7 5.5 0.34 11.2 1.1 2.5 1 1 2 3 3 3 0 ABC transporter C-terminal domain DivIC PF04977.15 AHV93283.1 - 0.99 9.2 8.4 1.6 8.5 3.0 2.9 2 1 1 3 3 3 0 Septum formation initiator APG6_N PF17675.1 AHV93283.1 - 3.7 8.1 9.1 20 5.7 9.1 2.0 1 1 0 1 1 1 0 Apg6 coiled-coil region Glutaredoxin PF00462.24 AHV93284.1 - 1.1e-17 64.0 0.0 1.9e-17 63.2 0.0 1.4 1 0 0 1 1 1 1 Glutaredoxin EF-hand_13 PF17958.1 AHV93284.1 - 0.021 14.6 0.1 0.04 13.7 0.0 1.5 1 1 0 1 1 1 0 EF-hand domain BPD_transp_1 PF00528.22 AHV93285.1 - 5.5e-21 75.1 36.5 1.3e-12 47.9 18.0 2.8 1 1 2 3 3 3 2 Binding-protein-dependent transport system inner membrane component Thioredoxin_2 PF13098.6 AHV93286.1 - 9.2e-15 55.0 0.0 1e-14 54.9 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_4 PF13462.6 AHV93286.1 - 3.1e-05 24.2 0.0 0.00019 21.7 0.0 1.8 1 1 0 2 2 2 1 Thioredoxin DSBA PF01323.20 AHV93286.1 - 0.00013 21.8 0.0 0.093 12.5 0.0 2.1 1 1 0 2 2 2 2 DSBA-like thioredoxin domain Thioredoxin_3 PF13192.6 AHV93286.1 - 0.017 15.1 0.0 2.1 8.5 0.0 2.2 2 0 0 2 2 2 0 Thioredoxin domain Glutaredoxin PF00462.24 AHV93286.1 - 0.13 12.5 0.0 0.31 11.3 0.1 1.7 2 0 0 2 2 2 0 Glutaredoxin FUSC PF04632.12 AHV93287.1 - 1.5e-104 350.9 16.9 1.9e-104 350.6 16.9 1.0 1 0 0 1 1 1 1 Fusaric acid resistance protein family FUSC_2 PF13515.6 AHV93287.1 - 9.3e-13 48.4 11.3 1.5e-12 47.7 11.3 1.3 1 0 0 1 1 1 1 Fusaric acid resistance protein-like ArAE_1 PF06081.11 AHV93287.1 - 0.01 16.0 3.5 0.031 14.4 3.5 1.8 1 1 0 1 1 1 0 Aromatic acid exporter family member 1 DUF1330 PF07045.11 AHV93288.1 - 5.9e-12 45.8 0.2 6.2e-12 45.7 0.2 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1330) Methyltransf_11 PF08241.12 AHV93289.1 - 1e-16 61.3 0.0 2.5e-16 60.1 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 AHV93289.1 - 1.9e-12 47.7 0.0 8.5e-12 45.6 0.0 2.1 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 AHV93289.1 - 3.2e-08 33.6 0.0 4.8e-08 33.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 AHV93289.1 - 2.3e-07 30.7 0.0 9.1e-07 28.8 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 AHV93289.1 - 3.8e-06 27.6 0.0 1.5e-05 25.6 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain MTHFR PF02219.17 AHV93290.1 - 3.9e-91 305.3 0.0 4.3e-91 305.2 0.0 1.0 1 0 0 1 1 1 1 Methylenetetrahydrofolate reductase PNP_UDP_1 PF01048.20 AHV93290.1 - 0.041 13.1 0.0 0.087 12.1 0.0 1.5 1 0 0 1 1 1 0 Phosphorylase superfamily 4HBT_2 PF13279.6 AHV93291.1 - 3e-14 53.6 0.0 3.7e-14 53.3 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily 4HBT PF03061.22 AHV93291.1 - 1.2e-09 38.4 0.0 2e-09 37.6 0.0 1.4 1 0 0 1 1 1 1 Thioesterase superfamily Acyl-ACP_TE PF01643.17 AHV93291.1 - 0.00029 20.2 0.0 0.00042 19.7 0.0 1.2 1 0 0 1 1 1 1 Acyl-ACP thioesterase UDPG_MGDP_dh_C PF03720.15 AHV93293.1 - 5.6e-21 74.9 0.0 7.9e-21 74.5 0.0 1.2 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RMI2 PF16100.5 AHV93293.1 - 0.0065 16.3 0.1 0.01 15.6 0.1 1.2 1 0 0 1 1 1 1 RecQ-mediated genome instability protein 2 UbiA PF01040.18 AHV93294.1 - 5.4e-54 183.1 23.3 7e-54 182.8 23.3 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family HAD PF12710.7 AHV93294.1 - 0.0024 18.3 0.0 0.0074 16.7 0.0 1.8 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase PrgI PF12666.7 AHV93294.1 - 0.48 11.2 9.8 0.091 13.5 4.7 2.5 2 1 0 2 2 2 0 PrgI family protein CPP1-like PF11833.8 AHV93294.1 - 0.66 9.6 4.0 1.4 8.6 4.0 1.5 1 0 0 1 1 1 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like PRA1 PF03208.19 AHV93294.1 - 1.7 8.2 6.2 0.49 10.0 0.5 2.5 2 1 0 2 2 2 0 PRA1 family protein Peptidase_M23 PF01551.22 AHV93295.1 - 8e-34 115.7 0.0 1.2e-33 115.2 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M23 rve PF00665.26 AHV93296.1 - 3.2e-25 88.6 0.1 1.1e-24 86.9 0.0 1.8 2 0 0 2 2 2 1 Integrase core domain HTH_38 PF13936.6 AHV93296.1 - 6e-08 32.3 0.7 1.7e-07 30.9 0.7 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 AHV93296.1 - 1.1e-06 28.2 0.2 1.4e-05 24.7 0.2 2.6 3 0 0 3 3 2 1 Homeodomain-like domain HTH_Tnp_Tc3_1 PF11427.8 AHV93296.1 - 1.2e-06 28.2 0.1 2.3e-06 27.3 0.1 1.4 1 0 0 1 1 1 1 Tc3 transposase HTH_11 PF08279.12 AHV93296.1 - 2.4e-05 24.2 0.1 5.1e-05 23.1 0.1 1.5 1 0 0 1 1 1 1 HTH domain NUMOD1 PF07453.13 AHV93296.1 - 2.4e-05 24.4 0.0 4.3e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 NUMOD1 domain HTH_Tnp_Tc3_2 PF01498.18 AHV93296.1 - 2.5e-05 24.4 0.1 5.9e-05 23.2 0.1 1.6 1 0 0 1 1 1 1 Transposase HTH_29 PF13551.6 AHV93296.1 - 2.7e-05 24.1 1.6 6.8e-05 22.8 0.1 2.4 2 0 0 2 2 2 1 Winged helix-turn helix TnsD PF15978.5 AHV93296.1 - 8.4e-05 21.7 0.0 0.00013 21.1 0.0 1.2 1 0 0 1 1 1 1 Tn7-like transposition protein D HTH_7 PF02796.15 AHV93296.1 - 0.00015 21.8 0.2 0.00028 20.9 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase Phage_NinH PF06322.11 AHV93296.1 - 0.00024 20.9 0.2 0.00051 19.9 0.2 1.5 1 0 0 1 1 1 1 Phage NinH protein rve_3 PF13683.6 AHV93296.1 - 0.0003 20.5 0.0 0.0013 18.5 0.0 2.1 1 1 0 1 1 1 1 Integrase core domain HTH_28 PF13518.6 AHV93296.1 - 0.00037 20.5 0.4 0.0029 17.7 0.3 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain ANT PF03374.14 AHV93296.1 - 0.00044 20.5 0.0 0.0011 19.3 0.0 1.6 1 0 0 1 1 1 1 Phage antirepressor protein KilAC domain Sigma70_r4_2 PF08281.12 AHV93296.1 - 0.00055 19.6 0.2 0.0043 16.7 0.1 2.3 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_ECF PF07638.11 AHV93296.1 - 0.00058 19.8 0.1 0.00097 19.1 0.1 1.3 1 0 0 1 1 1 1 ECF sigma factor HTH_10 PF04967.12 AHV93296.1 - 0.00071 19.3 0.0 0.0017 18.1 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain HTH_31 PF13560.6 AHV93296.1 - 0.00074 19.8 0.7 0.00074 19.8 0.7 2.8 3 1 0 3 3 2 1 Helix-turn-helix domain HTH_26 PF13443.6 AHV93296.1 - 0.0014 19.0 0.1 0.0027 18.1 0.1 1.4 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_36 PF13730.6 AHV93296.1 - 0.0019 18.1 0.0 0.0047 16.9 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_17 PF12728.7 AHV93296.1 - 0.0025 18.0 0.0 0.0067 16.6 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain MerR PF00376.23 AHV93296.1 - 0.0031 17.3 0.0 0.0076 16.0 0.0 1.7 1 0 0 1 1 1 1 MerR family regulatory protein HTH_3 PF01381.22 AHV93296.1 - 0.0043 17.1 0.1 0.01 15.9 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_8 PF02954.19 AHV93296.1 - 0.0066 16.2 0.2 0.016 15.0 0.2 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family HTH_30 PF13556.6 AHV93296.1 - 0.0069 16.2 0.0 0.015 15.1 0.0 1.6 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain HTH_DeoR PF08220.12 AHV93296.1 - 0.0094 15.7 0.0 0.026 14.3 0.0 1.7 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain MerR_1 PF13411.6 AHV93296.1 - 0.01 15.9 0.0 0.033 14.3 0.0 1.9 2 0 0 2 2 1 0 MerR HTH family regulatory protein HTH_Tnp_ISL3 PF13542.6 AHV93296.1 - 0.018 14.4 0.0 0.041 13.3 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_50 PF18024.1 AHV93296.1 - 0.018 14.6 0.1 0.04 13.5 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_IclR PF09339.10 AHV93296.1 - 0.019 14.8 0.0 0.059 13.2 0.0 1.9 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_Mga PF08280.11 AHV93296.1 - 0.031 14.3 0.0 0.073 13.1 0.0 1.5 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain DUF2089 PF09862.9 AHV93296.1 - 0.045 13.8 0.1 0.12 12.4 0.0 1.8 2 0 0 2 2 1 0 Protein of unknown function (DUF2089) HTH_24 PF13412.6 AHV93296.1 - 0.048 13.2 0.1 0.1 12.2 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_22 PF13309.6 AHV93296.1 - 0.053 13.6 0.0 0.12 12.4 0.0 1.6 1 0 0 1 1 1 0 HTH domain PmoA PF14100.6 AHV93296.1 - 0.063 12.8 0.1 0.13 11.7 0.1 1.5 1 0 0 1 1 1 0 Methane oxygenase PmoA HTH_6 PF01418.17 AHV93296.1 - 0.068 13.2 0.0 0.19 11.7 0.0 1.7 2 0 0 2 2 1 0 Helix-turn-helix domain, rpiR family HTH_19 PF12844.7 AHV93296.1 - 0.072 13.1 0.0 0.26 11.3 0.0 2.0 2 0 0 2 2 1 0 Helix-turn-helix domain GerE PF00196.19 AHV93296.1 - 0.083 12.4 0.0 0.15 11.7 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family Sigma70_r4 PF04545.16 AHV93296.1 - 0.11 12.1 0.2 0.65 9.6 0.3 2.2 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_40 PF14493.6 AHV93296.1 - 0.14 12.6 0.0 0.45 11.0 0.0 1.7 1 1 1 2 2 1 0 Helix-turn-helix domain Epimerase_2 PF02350.19 AHV93297.1 - 8.4e-117 389.9 0.1 9.5e-117 389.7 0.1 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase Glyco_trans_4_2 PF13477.6 AHV93297.1 - 0.0068 16.4 0.0 0.015 15.3 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_4 PF13439.6 AHV93297.1 - 0.027 14.5 0.0 0.057 13.4 0.0 1.7 1 0 0 1 1 1 0 Glycosyltransferase Family 4 PhzC-PhzF PF02567.16 AHV93298.1 - 1.4e-45 156.0 0.0 1.6e-45 155.8 0.0 1.0 1 0 0 1 1 1 1 Phenazine biosynthesis-like protein ETF_QO PF05187.13 AHV93299.1 - 4e-18 65.5 0.0 6.9e-18 64.7 0.0 1.3 1 0 0 1 1 1 1 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Epimerase PF01370.21 AHV93299.1 - 1.7e-09 37.5 0.0 7.4e-09 35.4 0.0 2.1 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 AHV93299.1 - 2.3e-08 33.5 0.0 5.3e-06 25.7 0.0 2.9 2 1 0 2 2 2 1 RmlD substrate binding domain DAO PF01266.24 AHV93299.1 - 1.5e-07 31.3 5.3 0.00016 21.4 0.7 2.8 3 0 0 3 3 3 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 AHV93299.1 - 1.8e-07 30.6 2.6 0.00033 19.9 1.5 2.3 1 1 1 2 2 2 2 FAD binding domain NAD_binding_8 PF13450.6 AHV93299.1 - 1.6e-06 28.3 0.1 6e-06 26.4 0.0 2.1 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain NAD_binding_10 PF13460.6 AHV93299.1 - 2.4e-06 27.6 0.0 1.2e-05 25.3 0.0 2.0 2 0 0 2 2 2 1 NAD(P)H-binding Pyr_redox_2 PF07992.14 AHV93299.1 - 2.7e-05 23.6 0.0 4.8e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 AHV93299.1 - 0.00014 21.2 0.0 0.0007 18.9 0.1 2.0 2 0 0 2 2 2 1 Thi4 family HI0933_like PF03486.14 AHV93299.1 - 0.00018 20.4 0.4 0.00025 19.9 0.4 1.2 1 0 0 1 1 1 1 HI0933-like protein FAD_binding_3 PF01494.19 AHV93299.1 - 0.00031 20.1 1.8 0.011 15.0 0.5 2.9 2 1 0 2 2 2 1 FAD binding domain Lycopene_cycl PF05834.12 AHV93299.1 - 0.00032 19.9 3.2 0.00065 18.8 0.5 2.1 2 0 0 2 2 2 1 Lycopene cyclase protein Pyr_redox PF00070.27 AHV93299.1 - 0.0006 20.3 1.2 1.6 9.3 0.3 3.5 4 0 0 4 4 3 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 AHV93299.1 - 0.00064 19.1 0.6 0.00095 18.5 0.6 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 AHV93299.1 - 0.005 16.2 0.1 0.0077 15.6 0.1 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_9 PF13454.6 AHV93299.1 - 0.0065 16.5 1.8 0.0092 16.0 0.2 2.0 2 0 0 2 2 2 1 FAD-NAD(P)-binding GDP_Man_Dehyd PF16363.5 AHV93299.1 - 0.037 13.4 0.0 0.1 12.0 0.0 1.7 1 1 0 1 1 1 0 GDP-mannose 4,6 dehydratase Trp_halogenase PF04820.14 AHV93299.1 - 0.046 12.6 0.5 0.11 11.3 0.2 1.7 2 0 0 2 2 2 0 Tryptophan halogenase TrkA_N PF02254.18 AHV93299.1 - 0.062 13.6 0.0 0.69 10.2 0.0 2.3 2 0 0 2 2 2 0 TrkA-N domain GIDA PF01134.22 AHV93299.1 - 0.17 10.9 0.2 0.28 10.2 0.2 1.3 1 0 0 1 1 1 0 Glucose inhibited division protein A LpxC PF03331.13 AHV93300.1 - 2.2e-96 322.5 0.0 2.5e-96 322.3 0.0 1.0 1 0 0 1 1 1 1 UDP-3-O-acyl N-acetylglycosamine deacetylase MipA PF06629.12 AHV93301.1 - 1.8e-41 142.7 7.0 2.1e-41 142.6 7.0 1.0 1 0 0 1 1 1 1 MltA-interacting protein MipA OMP_b-brl PF13505.6 AHV93301.1 - 5.9 7.0 11.7 3e+02 1.4 11.7 2.6 1 1 0 1 1 1 0 Outer membrane protein beta-barrel domain BPD_transp_2 PF02653.16 AHV93302.1 - 5.4e-06 25.8 5.9 5.4e-06 25.8 5.9 1.6 1 1 0 1 1 1 1 Branched-chain amino acid transport system / permease component Nitroreductase PF00881.24 AHV93303.1 - 2.2e-36 125.5 0.1 3.3e-36 124.9 0.1 1.3 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 AHV93303.1 - 1.9e-06 27.6 0.0 0.081 12.5 0.0 2.5 2 1 1 3 3 3 2 Putative TM nitroreductase FAD_binding_3 PF01494.19 AHV93304.1 - 1.4e-49 169.3 0.0 1.7e-49 168.9 0.0 1.1 1 0 0 1 1 1 1 FAD binding domain NAD_binding_9 PF13454.6 AHV93304.1 - 0.045 13.8 0.0 0.15 12.0 0.0 1.9 2 0 0 2 2 2 0 FAD-NAD(P)-binding Pyr_redox_2 PF07992.14 AHV93304.1 - 0.13 11.4 0.1 0.26 10.5 0.1 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase BPD_transp_2 PF02653.16 AHV93306.1 - 7.7e-43 146.6 39.1 9.6e-43 146.3 39.1 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component DUF4396 PF14342.6 AHV93306.1 - 0.041 14.2 0.9 0.041 14.2 0.9 2.8 1 1 1 3 3 3 0 Domain of unknown function (DUF4396) DFP PF04127.15 AHV93307.1 - 1.2e-61 207.9 0.3 1.3e-60 204.5 0.0 2.1 2 0 0 2 2 2 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.19 AHV93307.1 - 5.4e-45 153.0 0.1 1.1e-44 152.0 0.1 1.5 1 0 0 1 1 1 1 Flavoprotein PALP PF00291.25 AHV93307.1 - 0.057 12.8 2.1 0.077 12.4 0.5 2.0 2 0 0 2 2 2 0 Pyridoxal-phosphate dependent enzyme DrsE PF02635.15 AHV93307.1 - 0.064 13.6 0.1 1.3 9.4 0.1 2.4 2 0 0 2 2 2 0 DsrE/DsrF-like family TcpQ PF10671.9 AHV93308.1 - 5.5e-21 74.5 0.0 7.9e-21 74.0 0.0 1.3 1 0 0 1 1 1 1 Toxin co-regulated pilus biosynthesis protein Q Na_H_antiport_3 PF07399.11 AHV93309.1 - 5.9e-153 509.7 15.0 6.6e-153 509.5 15.0 1.0 1 0 0 1 1 1 1 Putative Na+/H+ antiporter Peptidase_S24 PF00717.23 AHV93310.1 - 9.5e-23 79.9 0.5 1.6e-22 79.3 0.5 1.4 1 0 0 1 1 1 1 Peptidase S24-like Peptidase_S26 PF10502.9 AHV93310.1 - 1.8e-12 47.2 0.0 6e-07 29.3 0.0 2.5 2 0 0 2 2 2 2 Signal peptidase, peptidase S26 PepSY_TM PF03929.16 AHV93310.1 - 0.046 13.4 0.0 0.046 13.4 0.0 1.1 1 0 0 1 1 1 0 PepSY-associated TM region BatD PF13584.6 AHV93310.1 - 0.15 10.8 0.8 0.19 10.5 0.8 1.1 1 0 0 1 1 1 0 Oxygen tolerance FAD_binding_6 PF00970.24 AHV93311.1 - 5.1e-09 36.4 0.0 1.9e-08 34.5 0.0 1.8 2 0 0 2 2 2 1 Oxidoreductase FAD-binding domain NAD_binding_1 PF00175.21 AHV93311.1 - 6.3e-07 30.0 0.0 1.3e-06 29.0 0.0 1.5 1 1 0 1 1 1 1 Oxidoreductase NAD-binding domain NAD_binding_6 PF08030.12 AHV93311.1 - 0.2 11.7 0.0 0.68 10.0 0.0 1.8 2 0 0 2 2 2 0 Ferric reductase NAD binding domain Exo_endo_phos PF03372.23 AHV93312.1 - 2.8e-18 66.3 0.1 3.2e-18 66.1 0.1 1.0 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Exo_endo_phos_2 PF14529.6 AHV93312.1 - 0.0016 18.2 0.0 0.0041 17.0 0.0 1.7 1 1 0 1 1 1 1 Endonuclease-reverse transcriptase Cyt_bd_oxida_II PF02322.15 AHV93313.1 - 3.1e-59 200.8 37.3 3.7e-59 200.6 37.3 1.0 1 0 0 1 1 1 1 Cytochrome bd terminal oxidase subunit II OATP PF03137.20 AHV93313.1 - 2.2 6.5 10.1 0.081 11.2 1.9 2.3 2 0 0 2 2 2 0 Organic Anion Transporter Polypeptide (OATP) family K_oxygenase PF13434.6 AHV93314.1 - 4.2e-118 394.4 0.0 5.2e-118 394.1 0.0 1.1 1 0 0 1 1 1 1 L-lysine 6-monooxygenase (NADPH-requiring) Pyr_redox_2 PF07992.14 AHV93314.1 - 0.0012 18.2 0.0 0.053 12.8 0.0 2.1 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 AHV93314.1 - 0.014 15.4 0.0 0.87 9.6 0.0 2.6 2 0 0 2 2 2 0 FAD-NAD(P)-binding BPD_transp_1 PF00528.22 AHV93315.1 - 2.8e-21 76.1 34.8 1.5e-13 50.9 11.2 3.5 2 1 1 3 3 3 2 Binding-protein-dependent transport system inner membrane component SDH_alpha PF03313.15 AHV93317.1 - 1.2e-101 339.7 4.2 1.7e-101 339.3 4.2 1.2 1 0 0 1 1 1 1 Serine dehydratase alpha chain SDH_beta PF03315.15 AHV93317.1 - 2.7e-56 190.2 0.1 8.5e-56 188.6 0.0 1.8 2 0 0 2 2 2 1 Serine dehydratase beta chain FA_desaturase_2 PF03405.14 AHV93319.1 - 1.5e-07 30.6 0.2 0.0057 15.5 0.1 2.1 2 0 0 2 2 2 2 Fatty acid desaturase AurF PF11583.8 AHV93319.1 - 1.1e-05 24.9 1.5 1.5e-05 24.4 1.5 1.3 1 0 0 1 1 1 1 P-aminobenzoate N-oxygenase AurF Rubrerythrin PF02915.17 AHV93319.1 - 0.0013 19.1 0.4 0.059 13.8 0.0 2.2 1 1 1 2 2 2 1 Rubrerythrin HTH_31 PF13560.6 AHV93320.1 - 5.1e-14 52.4 3.1 5.1e-14 52.4 3.1 1.8 2 1 1 3 3 3 1 Helix-turn-helix domain HTH_3 PF01381.22 AHV93320.1 - 7.5e-13 48.3 0.0 1.4e-12 47.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 AHV93320.1 - 3.2e-11 43.1 0.0 4.8e-11 42.5 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 AHV93320.1 - 7.4e-05 22.2 3.4 8e-05 22.1 1.1 2.3 2 1 1 3 3 3 1 Sigma-70, region 4 HTH_37 PF13744.6 AHV93320.1 - 0.0011 18.8 0.0 0.0023 17.8 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 AHV93320.1 - 0.0012 18.6 0.2 0.0021 17.9 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 AHV93320.1 - 0.0017 18.3 0.3 0.0051 16.8 0.1 1.9 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_23 PF13384.6 AHV93320.1 - 0.0019 17.9 3.2 0.0035 17.1 0.1 2.6 3 0 0 3 3 3 1 Homeodomain-like domain HTH_38 PF13936.6 AHV93320.1 - 0.0051 16.5 0.5 0.016 15.0 0.1 2.1 2 1 1 3 3 3 1 Helix-turn-helix domain MarR_2 PF12802.7 AHV93320.1 - 0.0091 15.9 1.3 0.54 10.2 0.1 2.7 2 1 1 3 3 3 1 MarR family MqsA_antitoxin PF15731.5 AHV93320.1 - 0.013 15.6 0.0 0.02 15.0 0.0 1.3 1 0 0 1 1 1 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA HTH_17 PF12728.7 AHV93320.1 - 0.026 14.7 0.1 0.14 12.4 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain Phage_CII PF05269.11 AHV93320.1 - 0.032 14.4 0.0 0.067 13.4 0.0 1.5 1 0 0 1 1 1 0 Bacteriophage CII protein Pou PF00157.17 AHV93320.1 - 0.035 14.1 0.5 0.1 12.6 0.5 1.7 1 1 0 1 1 1 0 Pou domain - N-terminal to homeobox domain Gag_MA PF01140.19 AHV93320.1 - 0.038 13.7 0.0 0.05 13.3 0.0 1.2 1 0 0 1 1 1 0 Matrix protein (MA), p15 HTH_26 PF13443.6 AHV93320.1 - 0.048 14.1 0.0 0.083 13.3 0.0 1.4 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain YdaS_antitoxin PF15943.5 AHV93320.1 - 0.088 12.7 0.1 0.25 11.2 0.0 1.7 2 0 0 2 2 2 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT Glycos_transf_1 PF00534.20 AHV93321.1 - 7.9e-24 84.1 0.0 1.1e-23 83.6 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 AHV93321.1 - 1.1e-23 84.1 2.3 1.6e-23 83.5 2.3 1.2 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.6 AHV93321.1 - 1.6e-22 80.4 0.0 4.1e-22 79.1 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 AHV93321.1 - 4.1e-18 66.3 10.7 4.1e-18 66.3 10.7 2.1 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_28 PF03033.20 AHV93321.1 - 0.00022 21.3 0.0 0.00037 20.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase family 28 N-terminal domain Glyco_trans_4_2 PF13477.6 AHV93321.1 - 0.00077 19.5 0.0 0.0012 18.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like CarboxypepD_reg PF13620.6 AHV93323.1 - 5.7e-05 23.3 0.2 9.4e-05 22.6 0.2 1.4 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain DUF4493 PF14900.6 AHV93323.1 - 0.0015 18.5 0.0 0.0017 18.2 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4493) SdrD_B PF17210.3 AHV93323.1 - 0.0022 18.2 0.1 0.0036 17.5 0.1 1.3 1 0 0 1 1 1 1 SdrD B-like domain CarbopepD_reg_2 PF13715.6 AHV93323.1 - 0.013 15.5 0.1 0.019 14.9 0.1 1.2 1 0 0 1 1 1 0 CarboxypepD_reg-like domain FlgD_ig PF13860.6 AHV93323.1 - 0.26 11.2 3.5 4.3 7.3 0.0 2.7 3 1 0 3 3 3 0 FlgD Ig-like domain BPD_transp_1 PF00528.22 AHV93325.1 - 1.1e-20 74.1 14.3 1.1e-20 74.1 14.3 1.5 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Peptidase_A8 PF01252.18 AHV93325.1 - 0.3 11.3 3.5 0.5 10.6 1.0 2.3 1 1 1 2 2 2 0 Signal peptidase (SPase) II Toprim_N PF08275.11 AHV93326.1 - 2.9e-36 124.3 0.0 6.3e-36 123.3 0.0 1.5 1 0 0 1 1 1 1 DNA primase catalytic core, N-terminal domain zf-CHC2 PF01807.20 AHV93326.1 - 6.2e-29 99.7 0.0 1.1e-28 98.9 0.0 1.4 1 0 0 1 1 1 1 CHC2 zinc finger Toprim_4 PF13662.6 AHV93326.1 - 1.3e-15 57.7 0.0 2.9e-15 56.5 0.0 1.6 1 0 0 1 1 1 1 Toprim domain Toprim_2 PF13155.6 AHV93326.1 - 2.4e-13 50.3 0.0 6e-13 49.0 0.0 1.8 1 0 0 1 1 1 1 Toprim-like DnaG_DnaB_bind PF08278.11 AHV93326.1 - 3e-12 47.2 1.0 3e-12 47.2 1.0 2.4 2 0 0 2 2 2 1 DNA primase DnaG DnaB-binding DnaB_bind PF10410.9 AHV93326.1 - 1.9e-10 40.8 0.0 9e-10 38.6 0.0 2.3 1 0 0 1 1 1 1 DnaB-helicase binding domain of primase Toprim PF01751.22 AHV93326.1 - 3.4e-09 36.9 0.0 7.4e-09 35.8 0.0 1.6 1 0 0 1 1 1 1 Toprim domain Toprim_3 PF13362.6 AHV93326.1 - 8.6e-06 26.0 0.1 3.4e-05 24.1 0.0 2.1 2 0 0 2 2 2 1 Toprim domain TctC PF03401.14 AHV93327.1 - 1.2e-78 263.9 0.8 1.5e-78 263.7 0.8 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor PBP_like_2 PF12849.7 AHV93327.1 - 0.021 14.5 0.3 0.058 13.0 0.1 2.0 1 1 1 2 2 2 0 PBP superfamily domain NusB PF01029.18 AHV93328.1 - 6.8e-29 100.8 0.0 8.1e-29 100.6 0.0 1.1 1 0 0 1 1 1 1 NusB family DUF1979 PF09322.10 AHV93328.1 - 0.18 11.7 0.3 0.39 10.7 0.3 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1979) ThiS PF02597.20 AHV93329.1 - 4.7e-14 52.8 0.1 5.3e-14 52.6 0.1 1.0 1 0 0 1 1 1 1 ThiS family Ferritin PF00210.24 AHV93330.1 - 5.6e-32 110.6 0.3 6.9e-32 110.3 0.3 1.0 1 0 0 1 1 1 1 Ferritin-like domain HpcH_HpaI PF03328.14 AHV93331.1 - 3.3e-52 176.8 0.0 3.9e-52 176.6 0.0 1.0 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family PK PF00224.21 AHV93331.1 - 0.079 11.8 0.0 0.12 11.3 0.0 1.2 1 0 0 1 1 1 0 Pyruvate kinase, barrel domain PepSY_TM_like_2 PF16357.5 AHV93332.1 - 0.32 10.9 3.2 0.36 10.8 3.2 1.0 1 0 0 1 1 1 0 Putative PepSY_TM-like DUF4131 PF13567.6 AHV93332.1 - 0.86 9.2 3.2 1.1 8.9 3.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF5516 PF17637.2 AHV93332.1 - 5.4 6.9 7.8 22 4.9 7.8 2.0 1 1 0 1 1 1 0 Family of unknown function (DUF5516) ABC_tran PF00005.27 AHV93333.1 - 9.9e-34 116.8 0.0 1.3e-33 116.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 AHV93333.1 - 8.6e-11 42.2 0.0 0.00024 21.0 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 AHV93333.1 - 3.1e-08 33.3 0.0 1.5e-06 27.8 0.0 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 AHV93333.1 - 0.00028 20.6 0.0 0.00051 19.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 AHV93333.1 - 0.00043 20.7 0.5 0.0013 19.2 0.4 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 AHV93333.1 - 0.00054 20.3 0.2 0.0031 17.8 0.2 2.0 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 AHV93333.1 - 0.0017 18.2 0.1 0.0037 17.2 0.1 1.5 1 0 0 1 1 1 1 RsgA GTPase ABC_ATPase PF09818.9 AHV93333.1 - 0.0028 16.5 0.3 2.9 6.6 0.1 2.9 2 1 0 2 2 2 2 Predicted ATPase of the ABC class AAA_33 PF13671.6 AHV93333.1 - 0.0046 17.1 0.1 0.0068 16.6 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 AHV93333.1 - 0.005 16.6 0.0 0.24 11.1 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 AHV93333.1 - 0.0095 16.5 0.0 0.015 15.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 AHV93333.1 - 0.013 16.1 0.0 0.03 14.9 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 AHV93333.1 - 0.019 14.6 0.4 0.086 12.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_13 PF13166.6 AHV93333.1 - 0.021 13.5 0.0 0.19 10.3 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 AHV93333.1 - 0.031 14.0 0.0 0.081 12.6 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 AHV93333.1 - 0.034 13.9 0.0 0.068 12.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 AHV93333.1 - 0.087 12.7 0.0 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 NACHT domain Rad17 PF03215.15 AHV93333.1 - 0.11 12.4 0.0 0.19 11.6 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain IIGP PF05049.13 AHV93333.1 - 0.12 11.4 0.0 0.23 10.5 0.0 1.4 1 0 0 1 1 1 0 Interferon-inducible GTPase (IIGP) ATP_bind_1 PF03029.17 AHV93333.1 - 0.13 12.1 0.0 0.28 10.9 0.0 1.6 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein SbcCD_C PF13558.6 AHV93333.1 - 0.16 12.3 0.2 2.7 8.3 0.2 2.4 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit DSBA PF01323.20 AHV93333.1 - 0.16 11.7 1.2 1.5 8.5 0.4 2.1 1 1 1 2 2 2 0 DSBA-like thioredoxin domain FeS_assembly_P PF01883.19 AHV93334.1 - 2.3e-17 62.9 0.1 2.9e-17 62.6 0.1 1.2 1 0 0 1 1 1 1 Iron-sulfur cluster assembly protein TctB PF07331.11 AHV93335.1 - 7.4e-11 42.5 3.0 8.7e-11 42.2 3.0 1.1 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctB family FixS PF03597.15 AHV93335.1 - 0.013 15.2 1.6 0.013 15.2 1.6 2.9 3 1 1 4 4 4 0 Cytochrome oxidase maturation protein cbb3-type PsbX PF06596.11 AHV93335.1 - 4.8 7.3 8.4 2.3 8.3 0.3 2.8 3 0 0 3 3 3 0 Photosystem II reaction centre X protein (PsbX) rve_3 PF13683.6 AHV93336.1 - 1.8e-31 107.7 0.0 4.1e-31 106.6 0.0 1.6 2 0 0 2 2 2 1 Integrase core domain rve PF00665.26 AHV93336.1 - 5.6e-24 84.6 0.0 9.5e-24 83.9 0.0 1.3 1 0 0 1 1 1 1 Integrase core domain rve_2 PF13333.6 AHV93336.1 - 7e-07 29.3 0.0 1.2e-06 28.6 0.0 1.3 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AHV93336.1 - 0.00052 20.3 0.0 0.00079 19.7 0.0 1.4 1 0 0 1 1 1 1 DDE domain DUF1415 PF07209.12 AHV93337.1 - 1.8e-29 102.7 0.0 2.1e-29 102.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1415) Aminotran_5 PF00266.19 AHV93338.1 - 4.2e-14 52.3 0.0 7.8e-14 51.4 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 AHV93338.1 - 0.00036 19.9 0.0 0.0006 19.2 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 AHV93338.1 - 0.0017 17.0 0.0 0.0022 16.6 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme ABC_tran PF00005.27 AHV93339.1 - 4.9e-34 117.8 0.0 6.6e-34 117.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 AHV93339.1 - 3.4e-10 40.2 0.4 0.00055 19.8 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 AHV93339.1 - 8.3e-08 31.9 0.0 1.8e-07 30.8 0.0 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 AHV93339.1 - 1.5e-05 25.3 0.0 4.6e-05 23.7 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 AHV93339.1 - 1.7e-05 24.7 0.0 1.7e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 AHV93339.1 - 3.7e-05 23.7 0.0 9.4e-05 22.4 0.0 1.7 2 0 0 2 2 2 1 RsgA GTPase AAA_29 PF13555.6 AHV93339.1 - 7e-05 22.5 0.0 0.00014 21.5 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 AHV93339.1 - 0.00031 21.2 0.0 0.00078 19.9 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 AHV93339.1 - 0.00049 20.6 0.3 0.00052 20.6 0.3 1.4 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 AHV93339.1 - 0.0081 15.9 0.0 0.13 12.0 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.6 AHV93339.1 - 0.027 14.1 0.0 0.28 10.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain PRK PF00485.18 AHV93339.1 - 0.033 13.9 0.0 0.065 13.0 0.0 1.5 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family Rad17 PF03215.15 AHV93339.1 - 0.039 13.9 0.0 0.061 13.3 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain TniB PF05621.11 AHV93339.1 - 0.044 13.2 0.0 0.83 9.0 0.0 2.1 2 0 0 2 2 2 0 Bacterial TniB protein AAA_33 PF13671.6 AHV93339.1 - 0.054 13.7 0.0 0.12 12.5 0.0 1.6 2 0 0 2 2 1 0 AAA domain IstB_IS21 PF01695.17 AHV93339.1 - 0.054 13.2 0.0 3.8 7.2 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein PhoH PF02562.16 AHV93339.1 - 0.054 12.9 0.0 0.27 10.7 0.0 2.1 1 1 0 1 1 1 0 PhoH-like protein ATPase_2 PF01637.18 AHV93339.1 - 0.061 13.2 0.0 0.4 10.6 0.0 2.0 2 1 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_24 PF13479.6 AHV93339.1 - 0.067 12.9 0.2 0.16 11.6 0.0 1.7 3 0 0 3 3 2 0 AAA domain AAA_7 PF12775.7 AHV93339.1 - 0.072 12.6 0.0 0.14 11.6 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_28 PF13521.6 AHV93339.1 - 0.078 13.2 0.0 0.28 11.4 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 AHV93339.1 - 0.1 12.6 0.0 0.25 11.3 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) RNA_helicase PF00910.22 AHV93339.1 - 0.11 12.8 0.0 0.27 11.6 0.0 1.8 1 0 0 1 1 1 0 RNA helicase QSOX_Trx1 PF18108.1 AHV93339.1 - 0.13 12.5 0.0 0.23 11.6 0.0 1.4 1 0 0 1 1 1 0 QSOX Trx-like domain SbcCD_C PF13558.6 AHV93339.1 - 0.14 12.4 0.2 5.1 7.4 0.2 2.4 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit G-alpha PF00503.20 AHV93339.1 - 0.16 11.1 0.0 0.36 9.9 0.0 1.2 1 1 0 1 1 1 0 G-protein alpha subunit ABC_ATPase PF09818.9 AHV93339.1 - 0.17 10.7 0.0 3.4 6.4 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class MlaA PF04333.13 AHV93340.1 - 4.9e-71 238.5 0.0 5.8e-71 238.2 0.0 1.0 1 0 0 1 1 1 1 MlaA lipoprotein PMT_2 PF13231.6 AHV93341.1 - 3e-16 60.1 14.6 3e-16 60.1 14.6 2.6 3 0 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase NAD_binding_2 PF03446.15 AHV93342.1 - 1.1e-43 149.2 0.3 2.2e-43 148.2 0.2 1.5 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.6 AHV93342.1 - 1.5e-22 80.1 0.1 3.6e-22 78.9 0.1 1.7 2 0 0 2 2 2 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase F420_oxidored PF03807.17 AHV93342.1 - 5.7e-06 26.8 0.0 1.7e-05 25.3 0.0 1.9 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 AHV93342.1 - 0.00021 20.7 0.0 0.002 17.6 0.0 2.1 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Shikimate_DH PF01488.20 AHV93342.1 - 0.0042 17.2 0.1 0.057 13.5 0.0 2.2 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase NAD_binding_10 PF13460.6 AHV93342.1 - 0.0049 16.8 0.0 0.012 15.6 0.0 1.6 1 0 0 1 1 1 1 NAD(P)H-binding CT_C_D PF02682.16 AHV93344.1 - 1.4e-66 224.1 0.0 1.6e-66 223.9 0.0 1.0 1 0 0 1 1 1 1 Carboxyltransferase domain, subdomain C and D K_trans PF02705.16 AHV93345.1 - 4.6e-199 662.4 15.7 5.3e-199 662.2 15.7 1.0 1 0 0 1 1 1 1 K+ potassium transporter VEGFR-2_TMD PF17988.1 AHV93345.1 - 4.6 6.8 6.7 5.2 6.6 2.9 2.7 2 0 0 2 2 2 0 VEGFR-2 Transmembrane domain Peripla_BP_6 PF13458.6 AHV93346.1 - 4.4e-13 49.6 0.1 6.1e-13 49.1 0.1 1.2 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 AHV93346.1 - 0.0086 15.1 0.0 0.011 14.7 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein domain AzlC PF03591.14 AHV93347.1 - 2.7e-34 118.5 11.0 2.7e-34 118.5 11.0 2.0 2 0 0 2 2 2 1 AzlC protein adh_short_C2 PF13561.6 AHV93348.1 - 3.8e-46 157.5 0.3 1.2e-42 146.1 0.1 2.7 3 0 0 3 3 3 2 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 AHV93348.1 - 3.5e-40 137.6 0.0 1.2e-37 129.3 0.0 2.8 3 0 0 3 3 3 1 short chain dehydrogenase KR PF08659.10 AHV93348.1 - 1e-06 28.8 0.2 2e-06 27.8 0.2 1.5 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 AHV93348.1 - 1.6e-05 24.5 0.1 2.4e-05 23.9 0.1 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Sacchrp_dh_NADP PF03435.18 AHV93348.1 - 0.0015 18.8 0.1 0.0029 17.8 0.1 1.5 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_10 PF13460.6 AHV93348.1 - 0.0059 16.5 0.2 0.011 15.7 0.2 1.5 1 0 0 1 1 1 1 NAD(P)H-binding TrkA_N PF02254.18 AHV93348.1 - 0.008 16.4 0.0 0.021 15.1 0.0 1.7 1 1 0 1 1 1 1 TrkA-N domain DUF2249 PF10006.9 AHV93348.1 - 0.072 13.0 0.0 0.33 10.9 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2249) RmlD_sub_bind PF04321.17 AHV93348.1 - 0.14 11.3 0.1 0.19 10.8 0.1 1.2 1 0 0 1 1 1 0 RmlD substrate binding domain Speriolin_N PF15058.6 AHV93348.1 - 0.16 12.0 0.6 0.64 10.1 0.1 1.9 2 0 0 2 2 2 0 Speriolin N terminus Polysacc_synt_2 PF02719.15 AHV93348.1 - 0.3 10.2 0.0 0.39 9.8 0.0 1.1 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein LysR_substrate PF03466.20 AHV93349.1 - 1.5e-24 86.5 4.4 2.4e-24 85.9 4.4 1.3 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 AHV93349.1 - 3.1e-11 43.0 2.2 7.6e-11 41.8 0.1 2.6 3 0 0 3 3 3 1 Bacterial regulatory helix-turn-helix protein, lysR family ABC_trans_aux PF03886.13 AHV93350.1 - 3.5e-11 43.0 2.5 9.1e-11 41.6 2.5 1.7 1 0 0 1 1 1 1 ABC-type transport auxiliary lipoprotein component MlaD PF02470.20 AHV93350.1 - 5.5e-11 42.6 0.2 1.1e-10 41.6 0.2 1.5 1 0 0 1 1 1 1 MlaD protein DUF948 PF06103.11 AHV93350.1 - 0.012 15.9 0.3 0.22 11.8 0.1 2.8 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) FlgN PF05130.12 AHV93350.1 - 0.12 12.9 2.1 0.27 11.7 2.1 1.6 1 0 0 1 1 1 0 FlgN protein MscS_porin PF12795.7 AHV93350.1 - 0.43 10.1 5.7 0.72 9.4 5.7 1.3 1 0 0 1 1 1 0 Mechanosensitive ion channel porin domain HrpJ PF07201.11 AHV93350.1 - 0.67 10.2 6.4 1.6 9.0 6.4 1.6 1 0 0 1 1 1 0 HrpJ-like domain ILVD_EDD PF00920.21 AHV93351.1 - 9.7e-183 608.5 3.5 1.1e-182 608.3 3.5 1.0 1 0 0 1 1 1 1 Dehydratase family ABC_tran PF00005.27 AHV93352.1 - 5.8e-25 88.4 0.0 8.3e-25 87.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 AHV93352.1 - 1.4e-05 25.1 1.0 0.008 16.0 0.5 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SbcCD_C PF13558.6 AHV93352.1 - 0.00053 20.2 0.0 0.0012 19.0 0.0 1.6 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit SMC_N PF02463.19 AHV93352.1 - 0.0038 16.7 0.0 1.6 8.1 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 AHV93352.1 - 0.0057 16.4 0.1 0.011 15.5 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 AHV93352.1 - 0.019 15.5 0.2 0.03 14.8 0.2 1.2 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 AHV93352.1 - 0.024 15.0 1.1 0.13 12.6 1.1 2.0 1 1 0 1 1 1 0 AAA ATPase domain RsgA_GTPase PF03193.16 AHV93352.1 - 0.035 14.0 0.1 0.064 13.2 0.1 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_22 PF13401.6 AHV93352.1 - 0.046 14.0 0.5 0.48 10.7 0.5 2.0 1 1 0 1 1 1 0 AAA domain AAA_13 PF13166.6 AHV93352.1 - 0.051 12.2 0.0 3 6.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain ATP-synt_ab PF00006.25 AHV93352.1 - 0.077 12.6 0.0 0.99 9.0 0.1 2.0 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_33 PF13671.6 AHV93352.1 - 0.093 12.9 0.1 0.56 10.4 0.1 2.1 1 1 0 1 1 1 0 AAA domain Glyco_hydro_130 PF04041.13 AHV93352.1 - 0.16 10.9 0.0 0.21 10.5 0.0 1.1 1 0 0 1 1 1 0 beta-1,4-mannooligosaccharide phosphorylase AAA_28 PF13521.6 AHV93352.1 - 0.18 12.0 0.0 0.35 11.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain 2-Hacid_dh PF00389.30 AHV93353.1 - 7.7e-07 28.8 0.0 9.2e-07 28.6 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DltD PF04914.12 AHV93354.1 - 9.8e-19 67.9 0.0 1.1e-18 67.8 0.0 1.0 1 0 0 1 1 1 1 DltD protein CMD PF02627.20 AHV93355.1 - 5.7e-19 68.0 4.5 7.2e-19 67.6 4.5 1.2 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family HTH_23 PF13384.6 AHV93355.1 - 0.014 15.1 0.1 0.035 13.9 0.1 1.7 1 0 0 1 1 1 0 Homeodomain-like domain DHquinase_II PF01220.19 AHV93355.1 - 0.025 14.2 0.1 0.032 13.9 0.1 1.2 1 0 0 1 1 1 0 Dehydroquinase class II DUF389 PF04087.14 AHV93355.1 - 0.67 10.0 5.8 2.2 8.3 0.2 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF389) DUF2949 PF11165.8 AHV93356.1 - 0.0053 17.1 0.3 0.69 10.3 0.1 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF2949) Unstab_antitox PF09720.10 AHV93356.1 - 0.098 12.7 0.1 0.15 12.1 0.1 1.3 1 0 0 1 1 1 0 Putative addiction module component MFS_1 PF07690.16 AHV93358.1 - 7e-50 169.9 48.3 5.1e-37 127.6 22.4 2.9 1 1 1 3 3 3 2 Major Facilitator Superfamily MFS_4 PF06779.14 AHV93358.1 - 9.1e-05 21.9 10.2 9.1e-05 21.9 10.2 2.7 2 1 0 2 2 2 1 Uncharacterised MFS-type transporter YbfB MFS_3 PF05977.13 AHV93358.1 - 0.00037 19.0 12.0 0.00037 19.0 12.0 2.2 2 0 0 2 2 2 2 Transmembrane secretion effector MFS_2 PF13347.6 AHV93358.1 - 0.0057 15.3 34.7 0.018 13.6 14.2 3.1 2 2 1 3 3 3 2 MFS/sugar transport protein Sugar_tr PF00083.24 AHV93358.1 - 0.012 14.5 32.0 0.041 12.8 12.6 3.2 2 1 0 2 2 2 0 Sugar (and other) transporter MadM PF03818.13 AHV93358.1 - 0.035 14.0 7.9 0.47 10.4 0.6 3.9 3 1 1 4 4 4 0 Malonate/sodium symporter MadM subunit 2-Hacid_dh_C PF02826.19 AHV93359.1 - 1.1e-45 155.2 0.0 1.2e-45 155.0 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 AHV93359.1 - 2.5e-05 23.9 0.0 2.8e-05 23.8 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 AHV93359.1 - 0.0005 20.3 0.0 0.00073 19.7 0.0 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 AHV93359.1 - 0.071 13.7 0.3 0.18 12.4 0.3 1.7 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent AlaDh_PNT_C PF01262.21 AHV93359.1 - 0.13 11.5 0.0 0.56 9.5 0.0 1.8 1 1 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain LptC PF06835.13 AHV93361.1 - 2.8e-37 128.0 0.0 3.4e-37 127.7 0.0 1.0 1 0 0 1 1 1 1 Lipopolysaccharide-assembly, LptC-related HTH_18 PF12833.7 AHV93362.1 - 3.5e-24 84.9 1.4 5e-24 84.4 1.4 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 AHV93362.1 - 5.8e-10 39.0 0.0 1.5e-05 24.9 0.0 2.3 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_23 PF13384.6 AHV93362.1 - 1.9e-05 24.3 0.1 0.011 15.5 0.0 2.5 2 0 0 2 2 2 2 Homeodomain-like domain HTH_Tnp_ISL3 PF13542.6 AHV93362.1 - 0.00015 21.1 0.1 0.31 10.5 0.0 2.5 2 0 0 2 2 2 2 Helix-turn-helix domain of transposase family ISL3 HTH_29 PF13551.6 AHV93362.1 - 0.00018 21.5 0.1 0.12 12.4 0.1 2.2 2 0 0 2 2 2 2 Winged helix-turn helix HTH_28 PF13518.6 AHV93362.1 - 0.0008 19.5 0.1 0.34 11.1 0.0 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_8 PF02954.19 AHV93362.1 - 0.0019 17.9 0.2 0.0054 16.5 0.2 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family HTH_7 PF02796.15 AHV93362.1 - 0.0049 16.9 0.0 0.81 9.8 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain of resolvase HTH_17 PF12728.7 AHV93362.1 - 0.026 14.7 0.0 0.048 13.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain TetR_N PF00440.23 AHV93362.1 - 0.047 13.5 0.0 0.1 12.4 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_31 PF13560.6 AHV93362.1 - 0.074 13.4 10.5 1.2 9.5 2.9 3.2 2 1 1 3 3 3 0 Helix-turn-helix domain HTH_1 PF00126.27 AHV93362.1 - 0.15 12.0 1.6 5.4 7.0 0.2 2.4 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_psq PF05225.16 AHV93362.1 - 0.16 11.7 0.1 0.69 9.7 0.0 1.9 2 0 0 2 2 2 0 helix-turn-helix, Psq domain Pep_deformylase PF01327.21 AHV93363.1 - 7.9e-52 175.1 0.0 9.2e-52 174.8 0.0 1.0 1 0 0 1 1 1 1 Polypeptide deformylase ABC_tran PF00005.27 AHV93364.1 - 1.4e-33 116.3 0.0 2e-33 115.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter OB_MalK PF17912.1 AHV93364.1 - 5.2e-12 46.4 0.3 1.6e-11 44.9 0.3 1.9 1 0 0 1 1 1 1 MalK OB fold domain AAA_21 PF13304.6 AHV93364.1 - 2.8e-08 33.9 0.0 0.0027 17.6 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE_2 PF08402.10 AHV93364.1 - 2.4e-06 27.6 0.0 5.8e-06 26.4 0.0 1.7 1 0 0 1 1 1 1 TOBE domain AAA_22 PF13401.6 AHV93364.1 - 0.00028 21.1 0.0 0.00068 19.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 AHV93364.1 - 0.00048 19.6 0.1 0.0074 15.7 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 AHV93364.1 - 0.00079 19.4 0.1 0.0014 18.6 0.1 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 AHV93364.1 - 0.00096 19.6 0.1 0.002 18.5 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 AHV93364.1 - 0.0012 18.5 0.0 0.0029 17.3 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain Rad17 PF03215.15 AHV93364.1 - 0.0033 17.4 0.0 0.0053 16.7 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain CysA_C_terminal PF17850.1 AHV93364.1 - 0.0038 17.8 0.0 0.0096 16.5 0.0 1.8 1 0 0 1 1 1 1 CysA C-terminal regulatory domain AAA_28 PF13521.6 AHV93364.1 - 0.0056 16.9 0.2 0.025 14.8 0.2 2.0 2 0 0 2 2 2 1 AAA domain ATPase_2 PF01637.18 AHV93364.1 - 0.012 15.6 0.0 0.02 14.8 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_23 PF13476.6 AHV93364.1 - 0.014 15.9 0.0 0.023 15.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 AHV93364.1 - 0.019 15.5 0.1 0.074 13.6 0.1 1.9 2 1 0 2 2 2 0 AAA domain AAA_33 PF13671.6 AHV93364.1 - 0.022 14.9 0.1 0.036 14.2 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 AHV93364.1 - 0.025 15.0 0.0 0.07 13.6 0.0 1.8 2 0 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.22 AHV93364.1 - 0.033 14.6 0.0 0.066 13.6 0.0 1.5 1 0 0 1 1 1 0 RNA helicase NB-ARC PF00931.22 AHV93364.1 - 0.044 13.0 0.3 0.1 11.8 0.3 1.6 1 0 0 1 1 1 0 NB-ARC domain TOBE PF03459.17 AHV93364.1 - 0.046 14.0 0.1 0.34 11.2 0.0 2.2 2 0 0 2 2 2 0 TOBE domain AAA_25 PF13481.6 AHV93364.1 - 0.046 13.3 0.0 0.12 11.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 AHV93364.1 - 0.057 13.3 0.0 0.14 12.1 0.0 1.6 1 0 0 1 1 1 0 NACHT domain AAA_14 PF13173.6 AHV93364.1 - 0.064 13.3 0.0 0.13 12.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 AHV93364.1 - 0.075 12.7 0.0 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 AHV93364.1 - 0.08 13.0 0.0 0.17 12.0 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase IstB_IS21 PF01695.17 AHV93364.1 - 0.091 12.5 0.0 0.18 11.6 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein Cytidylate_kin PF02224.18 AHV93364.1 - 0.12 12.1 0.3 0.73 9.5 0.1 2.0 2 0 0 2 2 2 0 Cytidylate kinase PRK PF00485.18 AHV93364.1 - 0.14 11.9 0.0 0.27 11.0 0.0 1.5 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_5 PF07728.14 AHV93364.1 - 0.15 12.1 0.1 0.62 10.1 0.1 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Adeno_IVa2 PF02456.15 AHV93364.1 - 0.17 10.6 0.0 0.25 10.1 0.0 1.2 1 0 0 1 1 1 0 Adenovirus IVa2 protein AAA_15 PF13175.6 AHV93364.1 - 0.3 10.7 0.0 0.42 10.3 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain TctC PF03401.14 AHV93365.1 - 1.1e-67 228.0 0.0 1.4e-67 227.7 0.0 1.1 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor Na_H_antiport_3 PF07399.11 AHV93366.1 - 2.3e-19 69.6 5.0 2.4e-19 69.5 5.0 1.0 1 0 0 1 1 1 1 Putative Na+/H+ antiporter SURF1 PF02104.15 AHV93367.1 - 1.9e-20 73.8 0.1 2.3e-20 73.6 0.1 1.1 1 0 0 1 1 1 1 SURF1 family DUF1805 PF08827.11 AHV93368.1 - 2.5e-21 75.8 0.2 3.3e-21 75.4 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1805) IMS PF00817.20 AHV93368.1 - 0.002 18.1 0.0 0.0028 17.7 0.0 1.4 1 1 0 1 1 1 1 impB/mucB/samB family NeuB PF03102.14 AHV93368.1 - 0.11 11.9 0.1 0.14 11.5 0.1 1.1 1 0 0 1 1 1 0 NeuB family Sigma70_ner PF04546.13 AHV93369.1 - 9.4e-62 208.5 0.3 9.4e-62 208.5 0.3 3.3 3 0 0 3 3 3 1 Sigma-70, non-essential region Sigma70_r1_1 PF03979.14 AHV93369.1 - 1.8e-29 101.6 0.3 9.8e-29 99.2 0.3 2.4 1 0 0 1 1 1 1 Sigma-70 factor, region 1.1 Sigma70_r3 PF04539.16 AHV93369.1 - 2.2e-24 85.3 3.2 3.1e-24 84.9 0.3 2.8 2 0 0 2 2 2 1 Sigma-70 region 3 Sigma70_r2 PF04542.14 AHV93369.1 - 4.3e-21 74.4 1.1 8.4e-21 73.5 0.3 2.0 2 0 0 2 2 2 1 Sigma-70 region 2 Sigma70_r1_2 PF00140.20 AHV93369.1 - 2.1e-14 53.2 0.3 4.7e-14 52.1 0.3 1.7 1 0 0 1 1 1 1 Sigma-70 factor, region 1.2 SHOCT PF09851.9 AHV93369.1 - 0.042 13.6 0.0 0.14 11.9 0.0 1.9 1 0 0 1 1 1 0 Short C-terminal domain SPO22 PF08631.10 AHV93369.1 - 0.09 12.3 0.4 0.31 10.5 0.0 2.0 3 0 0 3 3 3 0 Meiosis protein SPO22/ZIP4 like DUF720 PF05302.11 AHV93369.1 - 0.17 11.7 0.7 0.5 10.2 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF720) DDE_Tnp_ISL3 PF01610.17 AHV93370.1 - 7.9e-65 218.9 1.2 1.1e-64 218.4 0.3 1.6 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV93370.1 - 1.4e-11 43.6 0.1 3.6e-11 42.3 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV93370.1 - 5.4e-09 36.6 11.2 1.1e-08 35.6 11.2 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV93370.1 - 0.0056 16.7 0.2 0.016 15.3 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain SLT_L PF14718.6 AHV93370.1 - 0.016 15.3 1.5 0.016 15.3 1.5 1.9 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain NOB1_Zn_bind PF08772.11 AHV93370.1 - 0.017 15.3 0.2 1.2 9.3 0.0 2.5 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-IS66 PF13005.7 AHV93370.1 - 8.4 6.9 9.6 3.6 8.1 6.6 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 TipAS PF07739.13 AHV93372.1 - 0.073 13.6 0.0 0.11 13.1 0.0 1.3 1 0 0 1 1 1 0 TipAS antibiotic-recognition domain ZapD PF07072.11 AHV93374.1 - 6.6e-75 251.5 0.0 7.5e-75 251.3 0.0 1.0 1 0 0 1 1 1 1 Cell division protein OMPdecase PF00215.24 AHV93376.1 - 1.9e-29 102.9 0.0 2.2e-29 102.7 0.0 1.0 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family DAHP_synth_1 PF00793.20 AHV93377.1 - 3.5e-64 216.3 0.0 4.1e-64 216.1 0.0 1.0 1 0 0 1 1 1 1 DAHP synthetase I family GFO_IDH_MocA PF01408.22 AHV93377.1 - 0.038 14.8 0.1 0.07 14.0 0.1 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold DctP PF03480.13 AHV93378.1 - 9.6e-07 28.4 0.0 1.3e-06 28.0 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein, family 7 TAT_signal PF10518.9 AHV93378.1 - 0.004 16.9 3.6 0.009 15.8 3.6 1.6 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence rve_3 PF13683.6 AHV93379.1 - 8.2e-32 108.8 0.1 4.5e-31 106.4 0.0 2.2 2 0 0 2 2 2 1 Integrase core domain rve PF00665.26 AHV93379.1 - 4.1e-25 88.3 0.0 1.1e-23 83.7 0.0 2.2 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 AHV93379.1 - 1.8e-11 44.0 8.6 3.6e-11 43.0 8.6 1.5 1 0 0 1 1 1 1 HTH-like domain rve_2 PF13333.6 AHV93379.1 - 5.5e-07 29.7 0.0 1.3e-06 28.5 0.0 1.6 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AHV93379.1 - 0.00036 20.8 0.0 0.00093 19.4 0.0 1.7 1 1 1 2 2 2 1 DDE domain DUF1780 PF08682.10 AHV93379.1 - 0.012 15.3 1.0 0.15 11.8 0.3 2.2 2 0 0 2 2 2 0 Putative endonuclease, protein of unknown function (DUF1780) Rhomboid_SP PF12595.8 AHV93379.1 - 0.027 13.8 0.5 6.4 6.1 0.0 2.4 1 1 0 2 2 2 0 Rhomboid serine protease NTP_transferase PF00483.23 AHV93380.1 - 1.8e-29 103.0 0.0 2.1e-29 102.9 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 AHV93380.1 - 7.7e-09 36.1 0.2 1.2e-08 35.4 0.2 1.4 1 1 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 AHV93380.1 - 0.074 12.8 0.0 0.15 11.8 0.0 1.4 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DUF1214 PF06742.11 AHV93382.1 - 2.1e-24 86.1 0.0 3e-24 85.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1214) PAS_4 PF08448.10 AHV93383.1 - 2.3e-18 66.5 2.0 2e-15 57.0 0.0 3.0 2 1 1 3 3 3 2 PAS fold PAS PF00989.25 AHV93383.1 - 7.2e-17 61.4 0.1 3.3e-14 52.9 0.0 3.1 3 0 0 3 3 3 1 PAS fold HATPase_c PF02518.26 AHV93383.1 - 1.7e-16 60.7 0.0 8.4e-16 58.5 0.0 2.2 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 AHV93383.1 - 9.6e-16 57.9 0.0 7.2e-13 48.7 0.0 3.2 2 1 0 2 2 2 1 PAS domain PAS_8 PF13188.7 AHV93383.1 - 1e-11 44.6 0.0 5e-06 26.4 0.0 2.6 2 0 0 2 2 2 2 PAS domain HisKA PF00512.25 AHV93383.1 - 1.2e-07 31.6 0.0 3e-07 30.4 0.0 1.7 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_7 PF12860.7 AHV93383.1 - 0.00064 19.9 1.9 0.04 14.1 0.1 3.6 2 2 0 2 2 2 1 PAS fold PAS_3 PF08447.12 AHV93383.1 - 0.002 18.4 0.1 0.01 16.1 0.0 2.2 2 0 0 2 2 2 1 PAS fold HATPase_c_5 PF14501.6 AHV93383.1 - 0.0045 16.9 0.0 0.035 14.0 0.0 2.2 2 0 0 2 2 2 1 GHKL domain Abhydrolase_9_N PF15420.6 AHV93383.1 - 0.024 14.7 2.0 0.047 13.7 2.0 1.5 1 0 0 1 1 1 0 Alpha/beta-hydrolase family N-terminus TonB_dep_Rec PF00593.24 AHV93384.1 - 9.1e-20 72.0 19.7 1.2e-19 71.6 15.4 2.1 1 1 1 2 2 2 2 TonB dependent receptor Plug PF07715.15 AHV93384.1 - 2.5e-15 57.0 0.0 6.9e-15 55.5 0.0 1.7 1 0 0 1 1 1 1 TonB-dependent Receptor Plug Domain IclR PF01614.18 AHV93385.1 - 1.2e-17 63.9 0.0 2.6e-17 62.9 0.0 1.6 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 AHV93385.1 - 2.9e-08 33.4 0.3 7.2e-08 32.1 0.3 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.7 AHV93385.1 - 0.0013 18.8 0.2 0.004 17.2 0.2 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 AHV93385.1 - 0.01 15.4 0.2 0.019 14.5 0.2 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding RPA_C PF08784.11 AHV93385.1 - 0.027 15.1 0.0 0.046 14.4 0.0 1.3 1 0 0 1 1 1 0 Replication protein A C terminal HTH_27 PF13463.6 AHV93385.1 - 0.088 13.3 0.0 0.2 12.2 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain ANT PF03374.14 AHV93385.1 - 0.093 13.0 0.0 0.2 12.0 0.0 1.5 2 0 0 2 2 2 0 Phage antirepressor protein KilAC domain FliMN_C PF01052.20 AHV93386.1 - 9.3e-26 89.6 1.6 1.2e-25 89.3 1.6 1.1 1 0 0 1 1 1 1 Type III flagellar switch regulator (C-ring) FliN C-term FliN_N PF16973.5 AHV93386.1 - 0.00095 19.0 18.3 0.02 14.7 4.5 2.6 1 1 1 2 2 2 2 Flagellar motor switch protein FliN N-terminal DUF802 PF05650.11 AHV93386.1 - 1.6 9.3 14.8 0.18 12.3 4.0 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF802) FtsA PF14450.6 AHV93387.1 - 5.9e-38 129.4 0.9 1.3e-25 89.7 0.0 2.2 2 0 0 2 2 2 2 Cell division protein FtsA SHS2_FTSA PF02491.20 AHV93387.1 - 2.2e-32 111.3 1.1 2.2e-32 111.3 1.1 2.1 3 0 0 3 3 3 1 SHS2 domain inserted in FTSA MreB_Mbl PF06723.13 AHV93387.1 - 3e-16 59.2 0.7 3e-16 59.2 0.7 2.3 1 1 1 2 2 2 1 MreB/Mbl protein HSP70 PF00012.20 AHV93387.1 - 5.9e-09 34.7 0.8 0.0011 17.3 0.1 2.6 3 0 0 3 3 3 2 Hsp70 protein EutA PF06277.11 AHV93387.1 - 1.1e-06 27.8 0.3 2.1e-06 26.9 0.0 1.6 2 0 0 2 2 2 1 Ethanolamine utilisation protein EutA Actin PF00022.19 AHV93387.1 - 0.00013 20.8 0.6 0.0059 15.3 0.0 2.8 2 1 0 3 3 3 1 Actin PilM_2 PF11104.8 AHV93387.1 - 0.00065 18.8 0.0 0.082 11.9 0.0 2.9 2 1 0 2 2 2 1 Type IV pilus assembly protein PilM; DDR PF08841.10 AHV93387.1 - 0.0026 16.8 4.8 0.0026 16.8 4.8 1.9 2 1 0 2 2 2 1 Diol dehydratase reactivase ATPase-like domain NCD2 PF04905.13 AHV93387.1 - 0.031 14.2 0.0 0.08 12.9 0.0 1.6 1 0 0 1 1 1 0 NAB conserved region 2 (NCD2) Hydantoinase_A PF01968.18 AHV93387.1 - 0.033 13.5 1.3 0.32 10.2 0.4 2.5 1 1 1 3 3 3 0 Hydantoinase/oxoprolinase SrfB PF07520.11 AHV93387.1 - 0.14 10.0 0.3 0.23 9.3 0.3 1.2 1 0 0 1 1 1 0 Virulence factor SrfB Proton_antipo_M PF00361.20 AHV93388.1 - 6.5e-31 107.6 25.1 6.5e-31 107.6 25.1 2.7 3 1 0 3 3 3 1 Proton-conducting membrane transporter NADHdeh_related PF10125.9 AHV93388.1 - 0.00018 21.0 9.9 0.00018 21.0 9.9 2.7 2 0 0 2 2 2 1 NADH dehydrogenase I, subunit N related protein Proton_antipo_N PF00662.20 AHV93388.1 - 0.0032 17.5 0.2 0.015 15.4 0.2 2.2 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 4HBT PF03061.22 AHV93389.1 - 7.8e-19 67.8 0.0 1.2e-18 67.3 0.0 1.3 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_2 PF13279.6 AHV93389.1 - 2.3e-14 53.9 0.0 2.7e-14 53.7 0.0 1.0 1 0 0 1 1 1 1 Thioesterase-like superfamily Acyl-ACP_TE PF01643.17 AHV93389.1 - 0.089 12.1 0.0 0.1 11.9 0.0 1.0 1 0 0 1 1 1 0 Acyl-ACP thioesterase TctC PF03401.14 AHV93390.1 - 4.7e-73 245.6 0.1 5.5e-73 245.4 0.1 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor Phosphonate-bd PF12974.7 AHV93390.1 - 0.08 12.5 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 ABC transporter, phosphonate, periplasmic substrate-binding protein Aminotran_3 PF00202.21 AHV93391.1 - 8.5e-100 334.2 0.0 1e-99 334.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_5 PF00266.19 AHV93391.1 - 0.0049 15.9 0.0 0.011 14.7 0.0 1.5 2 0 0 2 2 2 1 Aminotransferase class-V ABC_membrane PF00664.23 AHV93392.1 - 9.3e-43 146.8 3.0 1.3e-42 146.4 3.0 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 AHV93392.1 - 3.7e-34 118.2 0.0 6.2e-34 117.5 0.0 1.4 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 AHV93392.1 - 3e-09 36.7 0.2 7.8e-07 28.7 0.0 2.2 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 AHV93392.1 - 5.2e-05 23.7 1.1 0.00012 22.5 0.3 2.0 2 0 0 2 2 2 1 AAA ATPase domain RsgA_GTPase PF03193.16 AHV93392.1 - 0.00051 20.0 0.0 0.0014 18.6 0.0 1.7 2 0 0 2 2 1 1 RsgA GTPase AAA_24 PF13479.6 AHV93392.1 - 0.0012 18.6 0.0 0.0023 17.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 AHV93392.1 - 0.0029 17.9 0.3 0.042 14.1 0.3 2.4 1 1 0 1 1 1 1 AAA domain ABC_ATPase PF09818.9 AHV93392.1 - 0.0033 16.3 0.1 0.016 14.0 0.0 2.0 2 0 0 2 2 2 1 Predicted ATPase of the ABC class AAA_29 PF13555.6 AHV93392.1 - 0.007 16.1 0.0 0.016 14.9 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.29 AHV93392.1 - 0.0076 16.7 0.1 0.064 13.7 0.1 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 AHV93392.1 - 0.014 15.3 0.8 0.25 11.3 0.0 2.6 3 0 0 3 3 3 0 NACHT domain AAA_30 PF13604.6 AHV93392.1 - 0.035 13.8 0.4 0.21 11.3 0.4 2.1 1 1 0 1 1 1 0 AAA domain DUF87 PF01935.17 AHV93392.1 - 0.053 13.6 0.0 2.3 8.3 0.0 2.3 2 0 0 2 2 2 0 Helicase HerA, central domain MMR_HSR1 PF01926.23 AHV93392.1 - 0.053 13.6 0.0 0.15 12.2 0.0 1.8 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_25 PF13481.6 AHV93392.1 - 0.068 12.7 0.1 0.9 9.1 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 AHV93392.1 - 0.12 12.7 0.1 5.2 7.3 0.1 2.5 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 AHV93392.1 - 0.14 11.4 0.1 0.43 9.7 0.0 1.8 2 0 0 2 2 2 0 NB-ARC domain HAMP PF00672.25 AHV93392.1 - 0.14 12.6 1.2 13 6.2 0.3 3.2 2 1 0 2 2 2 0 HAMP domain Septin PF00735.18 AHV93392.1 - 0.22 10.8 0.0 0.34 10.2 0.0 1.2 1 0 0 1 1 1 0 Septin DEAD PF00270.29 AHV93392.1 - 0.23 11.2 0.3 3.3 7.4 0.3 2.3 1 1 0 1 1 1 0 DEAD/DEAH box helicase AAA_5 PF07728.14 AHV93392.1 - 0.33 10.9 1.3 3.8 7.5 0.1 2.8 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) DUF4390 PF14334.6 AHV93394.1 - 3.6e-52 176.0 2.5 4.1e-52 175.9 2.5 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4390) DUF945 PF06097.11 AHV93394.1 - 0.2 10.7 0.0 0.36 9.9 0.0 1.3 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF945) DDE_Tnp_ISL3 PF01610.17 AHV93395.1 - 7.9e-65 218.9 1.2 1.1e-64 218.4 0.3 1.6 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV93395.1 - 1.4e-11 43.6 0.1 3.6e-11 42.3 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV93395.1 - 5.3e-09 36.6 11.2 1.1e-08 35.6 11.2 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV93395.1 - 0.0056 16.7 0.2 0.016 15.3 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain SLT_L PF14718.6 AHV93395.1 - 0.016 15.3 1.5 0.016 15.3 1.5 1.8 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain NOB1_Zn_bind PF08772.11 AHV93395.1 - 0.017 15.2 0.2 1.2 9.3 0.0 2.5 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-IS66 PF13005.7 AHV93395.1 - 8.2 6.9 9.6 3.6 8.1 6.6 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 TetR_N PF00440.23 AHV93396.1 - 3.9e-15 55.4 0.6 1.5e-14 53.5 0.0 2.1 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family TetR_C_31 PF17940.1 AHV93396.1 - 0.15 12.3 11.5 0.24 11.6 5.5 2.4 1 1 1 2 2 2 0 Tetracyclin repressor-like, C-terminal domain HAD PF12710.7 AHV93397.1 - 4e-22 79.5 0.1 5e-22 79.2 0.1 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 AHV93397.1 - 9e-13 49.0 0.3 7.6e-12 46.0 0.3 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 AHV93397.1 - 4.6e-12 46.2 0.9 3.4e-09 36.8 0.1 3.0 3 0 0 3 3 3 1 haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.12 AHV93397.1 - 0.00044 19.7 0.0 0.0015 18.0 0.0 1.7 1 1 0 1 1 1 1 Putative Phosphatase Autoind_bind PF03472.15 AHV93397.1 - 0.0076 15.7 0.0 0.034 13.6 0.0 2.0 2 0 0 2 2 2 1 Autoinducer binding domain HAD_2 PF13419.6 AHV93397.1 - 0.026 14.6 0.3 4.8 7.2 0.1 2.9 3 0 0 3 3 3 0 Haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 AHV93397.1 - 0.058 13.5 0.0 0.15 12.2 0.0 1.7 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase SRCR PF00530.18 AHV93397.1 - 0.12 12.9 0.0 0.22 12.0 0.0 1.5 1 0 0 1 1 1 0 Scavenger receptor cysteine-rich domain BPD_transp_1 PF00528.22 AHV93398.1 - 6.2e-26 91.3 8.0 6.2e-26 91.3 8.0 1.7 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component MethyTransf_Reg PF10119.9 AHV93399.1 - 1.3e-24 86.7 0.1 4.9e-24 84.8 0.1 2.0 1 0 0 1 1 1 1 Predicted methyltransferase regulatory domain Methyltransf_25 PF13649.6 AHV93399.1 - 4e-06 27.4 0.0 1.6e-05 25.5 0.0 2.1 3 0 0 3 3 3 1 Methyltransferase domain Methyltransf_11 PF08241.12 AHV93399.1 - 5.5e-05 23.7 0.0 0.0002 22.0 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 AHV93399.1 - 0.00092 19.9 0.0 0.0047 17.6 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 AHV93399.1 - 0.0016 18.3 0.0 0.0095 15.7 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Glycos_transf_1 PF00534.20 AHV93400.1 - 1.7e-37 128.6 0.0 3.2e-37 127.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 AHV93400.1 - 2.3e-27 96.1 0.1 4.3e-27 95.2 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 AHV93400.1 - 1.1e-17 64.5 0.7 2.4e-17 63.5 0.7 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 AHV93400.1 - 6.9e-14 52.6 8.2 9e-14 52.2 4.1 2.9 2 2 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 AHV93400.1 - 1.7e-11 44.4 0.0 6.3e-11 42.5 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 AHV93400.1 - 3.7e-10 40.0 0.0 9.2e-10 38.7 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase 4-like DUF498 PF04430.14 AHV93400.1 - 0.0028 17.7 0.1 0.86 9.7 0.0 2.7 3 0 0 3 3 3 1 Protein of unknown function (DUF498/DUF598) Phage_int_SAM_4 PF13495.6 AHV93400.1 - 0.19 12.2 0.0 0.39 11.2 0.0 1.4 1 0 0 1 1 1 0 Phage integrase, N-terminal SAM-like domain Poly_export PF02563.16 AHV93401.1 - 9.1e-14 51.4 0.0 1.4e-13 50.9 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide biosynthesis/export protein SLBB PF10531.9 AHV93401.1 - 0.068 13.0 0.1 0.19 11.6 0.1 1.9 1 0 0 1 1 1 0 SLBB domain DUF3579 PF12112.8 AHV93403.1 - 2.8e-37 127.1 0.0 3.1e-37 127.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3579) PhoH PF02562.16 AHV93404.1 - 5.8e-95 316.6 0.0 7.5e-95 316.2 0.0 1.1 1 0 0 1 1 1 1 PhoH-like protein AAA_30 PF13604.6 AHV93404.1 - 3e-09 36.9 0.0 5.6e-09 36.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.6 AHV93404.1 - 0.00013 22.3 0.0 0.00052 20.4 0.0 1.9 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 AHV93404.1 - 0.00016 21.4 0.0 0.00047 19.9 0.0 1.7 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_22 PF13401.6 AHV93404.1 - 0.00018 21.8 0.8 0.039 14.2 0.3 3.1 2 1 0 2 2 2 1 AAA domain AAA_25 PF13481.6 AHV93404.1 - 0.0011 18.6 0.1 0.0026 17.4 0.0 1.7 2 0 0 2 2 2 1 AAA domain DEAD PF00270.29 AHV93404.1 - 0.0012 18.7 0.0 0.041 13.7 0.0 2.2 2 0 0 2 2 2 1 DEAD/DEAH box helicase AAA_11 PF13086.6 AHV93404.1 - 0.066 13.0 0.0 14 5.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain Zot PF05707.12 AHV93404.1 - 0.11 12.2 0.0 1.4 8.5 0.0 2.1 1 1 0 1 1 1 0 Zonular occludens toxin (Zot) DotD PF16816.5 AHV93404.1 - 0.12 12.4 0.0 0.32 11.0 0.0 1.8 1 0 0 1 1 1 0 DotD protein UvrD-helicase PF00580.21 AHV93404.1 - 0.15 11.6 0.0 0.8 9.2 0.0 1.9 2 0 0 2 2 2 0 UvrD/REP helicase N-terminal domain HSP90 PF00183.18 AHV93405.1 - 2.9e-134 448.8 0.0 1.4e-131 439.9 0.0 2.0 1 1 1 2 2 2 2 Hsp90 protein HATPase_c PF02518.26 AHV93405.1 - 4.7e-10 40.0 0.0 9.3e-10 39.0 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 AHV93405.1 - 2.4e-09 37.1 0.0 4.9e-09 36.1 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TctC PF03401.14 AHV93406.1 - 7.2e-49 166.3 0.0 8.3e-49 166.1 0.0 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor PEP_mutase PF13714.6 AHV93407.1 - 2.5e-67 226.8 5.0 3e-67 226.6 5.0 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate phosphomutase ICL PF00463.21 AHV93407.1 - 0.0086 14.6 0.3 0.011 14.2 0.3 1.1 1 0 0 1 1 1 1 Isocitrate lyase family TraH_2 PF06871.11 AHV93407.1 - 0.016 14.9 0.3 0.021 14.5 0.3 1.2 1 0 0 1 1 1 0 TraH_2 ThiG PF05690.14 AHV93407.1 - 0.035 13.4 1.4 0.56 9.5 0.3 2.2 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG Pantoate_transf PF02548.15 AHV93407.1 - 0.23 10.8 6.2 4.6 6.6 0.2 3.5 2 1 1 3 3 3 0 Ketopantoate hydroxymethyltransferase rve PF00665.26 AHV93408.1 - 7e-21 74.6 0.3 2.3e-20 73.0 0.0 1.7 2 0 0 2 2 2 1 Integrase core domain rve_3 PF13683.6 AHV93408.1 - 1e-19 70.1 2.7 1.4e-19 69.6 2.7 1.2 1 0 0 1 1 1 1 Integrase core domain PG_binding_2 PF08823.11 AHV93408.1 - 0.019 15.3 0.0 0.027 14.8 0.0 1.3 1 0 0 1 1 1 0 Putative peptidoglycan binding domain DDE_Tnp_1_2 PF13586.6 AHV93408.1 - 0.092 13.1 0.4 0.22 11.9 0.1 1.8 1 1 1 2 2 2 0 Transposase DDE domain HD_4 PF13328.6 AHV93410.1 - 2.2e-45 154.2 7.5 4.9e-45 153.1 7.5 1.6 1 0 0 1 1 1 1 HD domain RelA_SpoT PF04607.17 AHV93410.1 - 2.3e-37 127.9 0.0 3.8e-37 127.1 0.0 1.4 1 0 0 1 1 1 1 Region found in RelA / SpoT proteins TGS PF02824.21 AHV93410.1 - 7e-21 74.0 0.0 1.4e-20 73.0 0.0 1.5 1 0 0 1 1 1 1 TGS domain ACT_4 PF13291.6 AHV93410.1 - 1.4e-16 60.9 0.0 3.3e-16 59.6 0.0 1.6 1 0 0 1 1 1 1 ACT domain ACT PF01842.25 AHV93410.1 - 4.8e-10 39.0 0.2 1.2e-09 37.8 0.2 1.7 1 0 0 1 1 1 1 ACT domain ThiS PF02597.20 AHV93410.1 - 0.055 14.1 0.2 0.51 11.0 0.0 2.7 3 0 0 3 3 3 0 ThiS family ACT_6 PF13740.6 AHV93410.1 - 0.094 12.7 0.1 0.29 11.1 0.1 1.8 1 0 0 1 1 1 0 ACT domain PDDEXK_1 PF12705.7 AHV93411.1 - 1.1e-19 71.3 0.2 1.6e-19 70.8 0.2 1.2 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily HTH_24 PF13412.6 AHV93413.1 - 1.6e-18 66.0 0.1 2.3e-18 65.5 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 AHV93413.1 - 5e-18 64.7 0.2 9e-18 63.8 0.2 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.21 AHV93413.1 - 8.9e-18 64.0 0.1 1.4e-17 63.4 0.1 1.2 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_11 PF08279.12 AHV93413.1 - 3.5e-05 23.7 0.1 5.8e-05 23.0 0.1 1.3 1 0 0 1 1 1 1 HTH domain HTH_Crp_2 PF13545.6 AHV93413.1 - 0.00085 19.3 0.0 0.0017 18.2 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_DeoR PF08220.12 AHV93413.1 - 0.001 18.8 0.1 0.018 14.8 0.1 2.2 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_20 PF12840.7 AHV93413.1 - 0.0024 17.9 0.0 0.0043 17.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 AHV93413.1 - 0.0053 16.2 0.1 0.0098 15.3 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_5 PF01022.20 AHV93413.1 - 0.016 15.1 0.0 0.028 14.3 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family MarR PF01047.22 AHV93413.1 - 0.089 12.7 0.0 0.14 12.1 0.0 1.3 1 0 0 1 1 1 0 MarR family DUF150 PF02576.17 AHV93414.1 - 6.9e-18 64.8 1.0 9.4e-18 64.4 0.3 1.6 2 0 0 2 2 2 1 RimP N-terminal domain DUF150_C PF17384.2 AHV93414.1 - 2.5e-12 46.8 1.0 7e-12 45.3 0.2 2.1 2 1 1 3 3 3 1 RimP C-terminal SH3 domain MoCF_biosynth PF00994.24 AHV93415.1 - 3.9e-22 78.5 0.0 5.6e-22 78.0 0.0 1.2 1 0 0 1 1 1 1 Probable molybdopterin binding domain AICARFT_IMPCHas PF01808.18 AHV93416.1 - 1.1e-115 386.2 0.2 1.4e-115 385.8 0.2 1.1 1 0 0 1 1 1 1 AICARFT/IMPCHase bienzyme MGS PF02142.22 AHV93416.1 - 2.9e-28 97.9 0.0 6.8e-28 96.7 0.0 1.7 2 0 0 2 2 2 1 MGS-like domain CSD PF00313.22 AHV93417.1 - 1.1e-30 105.2 0.3 1.4e-30 105.0 0.3 1.1 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain OB_RNB PF08206.11 AHV93417.1 - 0.00032 20.3 0.6 0.00052 19.7 0.6 1.4 1 0 0 1 1 1 1 Ribonuclease B OB domain Pyr_redox_2 PF07992.14 AHV93418.1 - 1.3e-58 198.6 0.2 1.6e-58 198.3 0.2 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Reductase_C PF14759.6 AHV93418.1 - 3.6e-23 81.9 0.0 9.7e-23 80.5 0.0 1.8 1 0 0 1 1 1 1 Reductase C-terminal Pyr_redox PF00070.27 AHV93418.1 - 4.8e-16 59.1 4.5 3e-13 50.1 0.1 3.5 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 AHV93418.1 - 2.6e-08 33.5 0.0 1.2e-07 31.3 0.0 1.9 1 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 AHV93418.1 - 1.9e-05 24.8 0.8 0.012 15.8 0.2 2.8 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain NAD_binding_9 PF13454.6 AHV93418.1 - 4.6e-05 23.5 4.8 0.65 10.0 0.0 4.1 3 1 1 4 4 4 2 FAD-NAD(P)-binding Amino_oxidase PF01593.24 AHV93418.1 - 0.00011 21.7 0.6 0.27 10.5 0.0 2.2 1 1 1 2 2 2 2 Flavin containing amine oxidoreductase DAO PF01266.24 AHV93418.1 - 0.00062 19.5 9.7 0.49 9.9 0.4 3.7 2 2 1 4 4 4 3 FAD dependent oxidoreductase GIDA PF01134.22 AHV93418.1 - 0.0007 18.8 0.3 0.25 10.4 1.1 2.2 2 0 0 2 2 2 2 Glucose inhibited division protein A HI0933_like PF03486.14 AHV93418.1 - 0.0011 17.8 1.8 0.51 9.0 0.1 3.1 2 1 1 3 3 3 1 HI0933-like protein 3HCDH_N PF02737.18 AHV93418.1 - 0.0013 18.6 0.1 0.0024 17.8 0.1 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_2 PF00890.24 AHV93418.1 - 0.067 12.3 6.4 0.18 10.8 0.1 3.1 3 0 0 3 3 3 0 FAD binding domain AlaDh_PNT_C PF01262.21 AHV93418.1 - 0.085 12.1 2.4 1.1 8.5 0.4 2.4 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Lycopene_cycl PF05834.12 AHV93418.1 - 0.093 11.8 2.9 6.7 5.6 0.3 3.7 2 1 2 4 4 4 0 Lycopene cyclase protein 2-Hacid_dh_C PF02826.19 AHV93418.1 - 0.16 11.3 0.0 0.43 9.9 0.0 1.8 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain MFS_1 PF07690.16 AHV93419.1 - 2.6e-40 138.5 39.6 2.6e-40 138.5 39.6 1.3 1 1 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.24 AHV93419.1 - 8.4e-08 31.5 8.1 8.4e-08 31.5 8.1 2.3 2 0 0 2 2 2 1 Sugar (and other) transporter TRI12 PF06609.13 AHV93419.1 - 3e-05 22.7 3.6 3e-05 22.7 3.6 1.5 2 0 0 2 2 2 1 Fungal trichothecene efflux pump (TRI12) Pertussis_S2S3 PF02918.15 AHV93420.1 - 0.00046 20.1 0.1 0.0037 17.2 0.1 1.9 1 1 0 1 1 1 1 Pertussis toxin, subunit 2 and 3, C-terminal domain TctC PF03401.14 AHV93421.1 - 2.7e-81 272.6 0.0 3.3e-81 272.3 0.0 1.1 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor PXPV PF12778.7 AHV93423.1 - 0.00051 19.9 52.9 0.0025 17.6 25.0 2.5 2 0 0 2 2 2 2 PXPV repeat (3 copies) GGN PF15685.5 AHV93423.1 - 0.23 10.5 5.2 0.28 10.2 5.2 1.0 1 0 0 1 1 1 0 Gametogenetin DEC-1_N PF04625.13 AHV93423.1 - 3.2 6.7 5.6 3.5 6.6 5.6 1.0 1 0 0 1 1 1 0 DEC-1 protein, N-terminal region rve_3 PF13683.6 AHV93424.1 - 8.3e-32 108.8 0.1 4.5e-31 106.4 0.0 2.2 2 0 0 2 2 2 1 Integrase core domain rve PF00665.26 AHV93424.1 - 4.2e-25 88.2 0.0 1.1e-23 83.7 0.0 2.2 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 AHV93424.1 - 1.8e-11 44.0 8.6 3.6e-11 43.0 8.6 1.5 1 0 0 1 1 1 1 HTH-like domain rve_2 PF13333.6 AHV93424.1 - 5.8e-07 29.6 0.0 1.3e-06 28.5 0.0 1.6 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AHV93424.1 - 0.00041 20.6 0.0 0.00091 19.5 0.0 1.6 1 1 1 2 2 2 1 DDE domain Rhomboid_SP PF12595.8 AHV93424.1 - 0.0081 15.6 0.3 2.2 7.6 0.0 2.3 1 1 0 2 2 2 2 Rhomboid serine protease DUF1780 PF08682.10 AHV93424.1 - 0.13 11.9 1.0 1.6 8.3 0.3 2.2 2 0 0 2 2 2 0 Putative endonuclease, protein of unknown function (DUF1780) Amidase PF01425.21 AHV93425.1 - 1.4e-91 307.7 0.3 1.7e-90 304.1 0.3 1.9 1 1 0 1 1 1 1 Amidase SKI PF01202.22 AHV93426.1 - 5.2e-50 169.7 0.0 6e-50 169.4 0.0 1.0 1 0 0 1 1 1 1 Shikimate kinase AAA_18 PF13238.6 AHV93426.1 - 4.1e-07 30.6 0.4 8.5e-07 29.6 0.4 1.5 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 AHV93426.1 - 7.9e-07 29.3 0.1 6.5e-06 26.4 0.0 1.9 1 1 1 2 2 2 1 AAA domain TsaE PF02367.17 AHV93426.1 - 0.00016 21.6 0.0 0.00027 21.0 0.0 1.3 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA PF00004.29 AHV93426.1 - 0.0064 16.9 0.0 0.0096 16.3 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Cytidylate_kin2 PF13189.6 AHV93426.1 - 0.02 15.1 0.5 0.21 11.7 0.1 2.1 1 1 0 2 2 2 0 Cytidylate kinase-like family AAA_16 PF13191.6 AHV93426.1 - 0.022 15.1 0.1 0.044 14.2 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain Zeta_toxin PF06414.12 AHV93426.1 - 0.071 12.4 0.0 0.12 11.6 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_5 PF07728.14 AHV93426.1 - 0.075 13.0 0.1 0.24 11.4 0.1 1.7 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) APS_kinase PF01583.20 AHV93426.1 - 0.089 12.7 0.0 0.23 11.3 0.0 1.7 2 0 0 2 2 2 0 Adenylylsulphate kinase AAA_25 PF13481.6 AHV93426.1 - 0.11 12.1 0.1 0.18 11.4 0.1 1.5 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.6 AHV93426.1 - 0.18 12.3 0.0 0.23 12.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain DUF3515 PF12028.8 AHV93426.1 - 0.24 11.1 1.1 0.96 9.2 0.5 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF3515) NB-ARC PF00931.22 AHV93426.1 - 0.25 10.5 0.0 0.35 10.0 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain dNK PF01712.19 AHV93426.1 - 0.27 11.1 0.2 2.3 8.0 0.0 2.0 2 0 0 2 2 2 0 Deoxynucleoside kinase LZ_Tnp_IS481 PF13011.6 AHV93427.1 - 2.3e-22 79.3 3.4 3.7e-20 72.2 0.7 2.3 1 1 1 2 2 2 1 leucine-zipper of insertion element IS481 HTH_23 PF13384.6 AHV93427.1 - 2.2e-17 62.3 4.3 7.5e-08 32.0 0.1 2.4 2 0 0 2 2 2 2 Homeodomain-like domain HTH_28 PF13518.6 AHV93427.1 - 5.5e-17 61.6 2.5 1.9e-11 43.9 0.1 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_29 PF13551.6 AHV93427.1 - 2.5e-12 46.6 0.7 1.3e-06 28.3 0.0 2.4 2 0 0 2 2 2 2 Winged helix-turn helix HTH_32 PF13565.6 AHV93427.1 - 3e-11 43.8 0.7 3e-11 43.8 0.7 1.7 2 0 0 2 2 1 1 Homeodomain-like domain Sigma70_r4_2 PF08281.12 AHV93427.1 - 1.6e-06 27.7 0.1 0.0026 17.4 0.3 2.3 2 0 0 2 2 2 2 Sigma-70, region 4 HTH_38 PF13936.6 AHV93427.1 - 1.7e-06 27.7 2.0 3.5e-06 26.7 1.2 2.0 2 1 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 AHV93427.1 - 1.9e-06 27.6 3.8 3.9e-05 23.5 1.3 2.4 2 0 0 2 2 2 1 MarR family HTH_Tnp_ISL3 PF13542.6 AHV93427.1 - 2.6e-06 26.8 2.3 0.00081 18.7 0.6 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 Sigma70_r4 PF04545.16 AHV93427.1 - 4.6e-05 22.8 0.1 0.00023 20.6 0.2 2.0 2 0 0 2 2 2 1 Sigma-70, region 4 YdaS_antitoxin PF15943.5 AHV93427.1 - 9e-05 22.3 0.3 0.1 12.5 0.0 2.6 2 1 0 2 2 2 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_24 PF13412.6 AHV93427.1 - 0.00019 21.0 0.2 0.0009 18.8 0.3 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 AHV93427.1 - 0.00019 21.3 1.0 0.0014 18.5 0.4 2.4 2 1 0 2 2 2 1 Crp-like helix-turn-helix domain LacI PF00356.21 AHV93427.1 - 0.00022 20.9 1.0 0.0018 18.0 0.6 2.3 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family HTH_Tnp_1 PF01527.20 AHV93427.1 - 0.00026 21.2 0.6 0.0057 16.9 0.0 2.2 1 1 1 2 2 2 1 Transposase Trp_repressor PF01371.19 AHV93427.1 - 0.00055 20.0 0.3 0.0024 17.9 0.1 1.9 2 0 0 2 2 2 1 Trp repressor protein HTH_31 PF13560.6 AHV93427.1 - 0.00056 20.2 1.6 0.00056 20.2 1.6 3.2 3 2 1 4 4 2 1 Helix-turn-helix domain HTH_5 PF01022.20 AHV93427.1 - 0.00058 19.7 0.0 0.38 10.6 0.0 2.6 3 0 0 3 3 2 1 Bacterial regulatory protein, arsR family HTH_3 PF01381.22 AHV93427.1 - 0.00062 19.8 0.3 0.0058 16.7 0.3 2.3 2 0 0 2 2 2 1 Helix-turn-helix Fe_dep_repress PF01325.19 AHV93427.1 - 0.00076 19.6 0.0 0.013 15.7 0.0 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_30 PF13556.6 AHV93427.1 - 0.0011 18.7 0.1 0.27 11.1 0.0 2.5 2 0 0 2 2 2 1 PucR C-terminal helix-turn-helix domain HTH_11 PF08279.12 AHV93427.1 - 0.0011 18.9 0.6 0.0061 16.5 0.5 2.3 2 0 0 2 2 2 1 HTH domain HTH_IclR PF09339.10 AHV93427.1 - 0.0012 18.6 2.1 0.015 15.1 0.7 2.5 2 0 0 2 2 2 1 IclR helix-turn-helix domain RepB PF07506.11 AHV93427.1 - 0.0013 18.9 0.3 0.21 11.7 0.1 2.1 1 1 1 2 2 2 1 RepB plasmid partitioning protein SpoIIID PF12116.8 AHV93427.1 - 0.0022 18.0 0.0 1.6 8.9 0.0 2.2 2 0 0 2 2 2 1 Stage III sporulation protein D HTH_AsnC-type PF13404.6 AHV93427.1 - 0.0026 17.5 3.6 0.023 14.5 1.4 2.7 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain CENP-B_N PF04218.13 AHV93427.1 - 0.0035 17.0 0.0 0.68 9.6 0.1 2.3 2 0 0 2 2 2 1 CENP-B N-terminal DNA-binding domain HTH_10 PF04967.12 AHV93427.1 - 0.0039 17.0 0.1 0.021 14.6 0.2 2.0 2 0 0 2 2 2 1 HTH DNA binding domain UPF0175 PF03683.13 AHV93427.1 - 0.0039 16.9 0.5 0.037 13.7 0.1 2.3 2 1 1 3 3 2 1 Uncharacterised protein family (UPF0175) HTH_35 PF13693.6 AHV93427.1 - 0.004 17.2 1.0 0.026 14.6 0.5 2.1 1 1 1 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_37 PF13744.6 AHV93427.1 - 0.0058 16.6 0.2 0.049 13.6 0.1 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_psq PF05225.16 AHV93427.1 - 0.0074 16.0 0.4 0.97 9.2 0.5 2.3 2 0 0 2 2 2 1 helix-turn-helix, Psq domain Crp PF00325.20 AHV93427.1 - 0.0081 15.8 1.2 0.028 14.1 0.5 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, crp family HTH_Tnp_4 PF13613.6 AHV93427.1 - 0.01 15.6 0.0 0.029 14.1 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease GntR PF00392.21 AHV93427.1 - 0.016 14.9 0.9 0.19 11.4 0.3 2.4 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family MarR PF01047.22 AHV93427.1 - 0.017 15.1 0.2 0.062 13.2 0.1 2.0 2 1 0 2 2 1 0 MarR family HTH_17 PF12728.7 AHV93427.1 - 0.019 15.1 0.0 3.5 7.9 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_1 PF00126.27 AHV93427.1 - 0.029 14.3 3.3 2 8.5 0.5 2.5 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family P22_Cro PF14549.6 AHV93427.1 - 0.036 13.9 2.1 5.5 6.9 0.2 2.3 2 0 0 2 2 2 0 DNA-binding transcriptional regulator Cro DUF746 PF05344.11 AHV93427.1 - 0.037 13.8 0.1 0.75 9.7 0.0 2.3 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) HTH_36 PF13730.6 AHV93427.1 - 0.048 13.6 0.0 0.22 11.5 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_20 PF12840.7 AHV93427.1 - 0.051 13.6 1.5 9.2 6.4 0.1 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain DUF1804 PF08822.11 AHV93427.1 - 0.065 13.2 0.2 6.3 6.8 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1804) Sigma54_DBD PF04552.13 AHV93427.1 - 0.073 12.8 0.1 0.12 12.0 0.1 1.3 1 0 0 1 1 1 0 Sigma-54, DNA binding domain KORA PF16509.5 AHV93427.1 - 0.073 13.4 0.1 1.3 9.3 0.0 2.2 2 0 0 2 2 2 0 TrfB plasmid transcriptional repressor TrmB PF01978.19 AHV93427.1 - 0.091 12.7 0.0 0.26 11.2 0.1 1.7 2 0 0 2 2 1 0 Sugar-specific transcriptional regulator TrmB HTH_7 PF02796.15 AHV93427.1 - 0.095 12.8 0.1 0.21 11.7 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_8 PF02954.19 AHV93427.1 - 0.11 12.3 0.9 6.3 6.7 0.8 2.5 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family MerR_1 PF13411.6 AHV93427.1 - 0.11 12.6 0.6 1.2 9.3 0.0 2.6 3 0 0 3 3 2 0 MerR HTH family regulatory protein HTH_40 PF14493.6 AHV93427.1 - 0.11 13.0 0.0 1.4 9.4 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain MerR PF00376.23 AHV93427.1 - 0.13 12.1 6.9 1 9.2 0.0 3.4 4 0 0 4 4 3 0 MerR family regulatory protein HTH_Tnp_Tc3_2 PF01498.18 AHV93427.1 - 0.18 12.1 0.1 0.18 12.1 0.1 2.6 4 0 0 4 4 2 0 Transposase Ribosomal_S13 PF00416.22 AHV93428.1 - 3.3e-32 111.6 4.8 1.1e-16 61.4 2.4 2.0 1 1 1 2 2 2 2 Ribosomal protein S13/S18 FbpA PF05833.11 AHV93428.1 - 0.0044 15.8 0.0 0.0051 15.6 0.0 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) HHH_5 PF14520.6 AHV93428.1 - 0.0063 17.1 0.1 0.024 15.2 0.0 1.9 1 1 1 2 2 2 1 Helix-hairpin-helix domain HHH_6 PF14579.6 AHV93428.1 - 0.065 13.5 0.3 2.8 8.3 0.1 2.2 1 1 1 2 2 2 0 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.9 AHV93428.1 - 0.12 12.2 0.1 0.38 10.6 0.1 2.1 1 1 0 1 1 1 0 Fingers domain of DNA polymerase lambda CoA_binding PF02629.19 AHV93428.1 - 0.15 12.7 0.0 0.3 11.8 0.0 1.5 1 1 1 2 2 2 0 CoA binding domain MoaC PF01967.21 AHV93429.1 - 1.2e-52 177.6 0.2 1.4e-52 177.4 0.2 1.0 1 0 0 1 1 1 1 MoaC family DUF1707 PF08044.11 AHV93429.1 - 0.042 13.9 0.1 0.2 11.8 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1707) Plug PF07715.15 AHV93430.1 - 2.6e-18 66.5 1.5 5e-18 65.6 1.5 1.5 1 0 0 1 1 1 1 TonB-dependent Receptor Plug Domain STN PF07660.14 AHV93430.1 - 3.1e-08 33.3 0.0 1.2e-06 28.2 0.0 2.8 2 0 0 2 2 2 1 Secretin and TonB N terminus short domain Peptidase_M15_2 PF05951.13 AHV93430.1 - 0.029 14.0 0.0 0.059 13.0 0.0 1.4 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF882) DDE_Tnp_ISL3 PF01610.17 AHV93432.1 - 7.9e-65 218.9 1.2 1.1e-64 218.4 0.3 1.6 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV93432.1 - 1.4e-11 43.6 0.1 3.6e-11 42.3 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV93432.1 - 5.3e-09 36.6 11.2 1.1e-08 35.6 11.2 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV93432.1 - 0.0056 16.7 0.2 0.016 15.3 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain SLT_L PF14718.6 AHV93432.1 - 0.016 15.3 1.5 0.016 15.3 1.5 1.8 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain NOB1_Zn_bind PF08772.11 AHV93432.1 - 0.017 15.2 0.2 1.2 9.3 0.0 2.5 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-IS66 PF13005.7 AHV93432.1 - 8.2 6.9 9.6 3.6 8.1 6.6 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Lipoprotein_18 PF06804.11 AHV93433.1 - 6.2e-49 166.8 0.2 7e-49 166.6 0.2 1.0 1 0 0 1 1 1 1 NlpB/DapX lipoprotein MLTD_N PF06474.12 AHV93433.1 - 0.03 14.5 0.1 0.079 13.1 0.1 1.7 1 0 0 1 1 1 0 MltD lipid attachment motif rve PF00665.26 AHV93434.1 - 7e-21 74.6 0.3 2.3e-20 73.0 0.0 1.7 2 0 0 2 2 2 1 Integrase core domain rve_3 PF13683.6 AHV93434.1 - 9.8e-20 70.1 2.7 1.4e-19 69.6 2.7 1.2 1 0 0 1 1 1 1 Integrase core domain PG_binding_2 PF08823.11 AHV93434.1 - 0.019 15.3 0.0 0.027 14.8 0.0 1.3 1 0 0 1 1 1 0 Putative peptidoglycan binding domain DDE_Tnp_1_2 PF13586.6 AHV93434.1 - 0.093 13.1 0.4 0.22 11.9 0.1 1.8 1 1 1 2 2 2 0 Transposase DDE domain Collagen_mid PF15984.5 AHV93435.1 - 3.5e-21 75.9 54.0 1.8e-14 54.0 15.7 4.7 3 2 1 4 4 4 2 Bacterial collagen, middle region ECH_1 PF00378.20 AHV93436.1 - 4.5e-28 98.2 0.0 9.4e-27 93.9 0.0 2.0 1 1 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 AHV93436.1 - 1.3e-20 74.2 0.1 2.6e-19 69.9 0.1 2.0 1 1 0 1 1 1 1 Enoyl-CoA hydratase/isomerase SBP_bac_8 PF13416.6 AHV93437.1 - 5.4e-10 39.5 1.5 5.4e-10 39.5 1.5 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 AHV93437.1 - 2.2e-08 34.4 2.9 2.4e-08 34.3 1.6 1.5 1 1 1 2 2 2 1 Bacterial extracellular solute-binding protein TctC PF03401.14 AHV93438.1 - 4.5e-64 216.2 0.2 6e-64 215.7 0.2 1.1 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor MoeA_N PF03453.17 AHV93438.1 - 0.052 13.3 0.6 0.14 11.9 0.0 2.0 2 1 0 2 2 2 0 MoeA N-terminal region (domain I and II) Ni_hydr_CYTB PF01292.20 AHV93439.1 - 2.6e-28 98.8 16.1 3.4e-28 98.5 16.1 1.1 1 0 0 1 1 1 1 Prokaryotic cytochrome b561 DUF4405 PF14358.6 AHV93439.1 - 8.9e-09 35.8 33.1 9.5e-08 32.5 14.6 2.4 2 0 0 2 2 2 2 Domain of unknown function (DUF4405) PepSY_TM PF03929.16 AHV93439.1 - 0.31 10.7 18.2 0.48 10.0 2.1 2.1 2 0 0 2 2 2 0 PepSY-associated TM region 7tm_7 PF08395.12 AHV93439.1 - 1.3 8.2 15.6 2.9 7.0 15.5 1.5 1 1 0 1 1 1 0 7tm Chemosensory receptor DEAD PF00270.29 AHV93440.1 - 1.4e-50 171.4 0.0 3.9e-50 170.0 0.0 1.7 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 AHV93440.1 - 1.3e-28 99.6 0.0 3.6e-28 98.1 0.0 1.8 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 AHV93440.1 - 1.3e-05 25.3 0.0 2.5e-05 24.3 0.0 1.5 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit ERCC3_RAD25_C PF16203.5 AHV93440.1 - 0.0039 16.5 0.0 0.0056 15.9 0.0 1.2 1 0 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase AAA_22 PF13401.6 AHV93440.1 - 0.12 12.6 1.4 0.5 10.6 1.4 2.0 1 1 0 1 1 1 0 AAA domain Peptidase_S9 PF00326.21 AHV93441.1 - 7.8e-53 179.1 0.2 1.3e-52 178.4 0.2 1.3 1 0 0 1 1 1 1 Prolyl oligopeptidase family Peptidase_S9_N PF02897.15 AHV93441.1 - 1.8e-21 76.5 0.0 3.7e-21 75.4 0.0 1.5 1 1 0 1 1 1 1 Prolyl oligopeptidase, N-terminal beta-propeller domain Esterase PF00756.20 AHV93441.1 - 0.0035 17.0 0.1 0.0073 16.0 0.1 1.5 1 0 0 1 1 1 1 Putative esterase Hydrolase_4 PF12146.8 AHV93441.1 - 0.0062 15.8 0.1 0.049 12.9 0.0 2.1 2 0 0 2 2 2 1 Serine aminopeptidase, S33 Abhydrolase_3 PF07859.13 AHV93441.1 - 0.015 15.2 0.6 0.035 13.9 0.6 1.7 1 1 0 1 1 1 0 alpha/beta hydrolase fold HTH_39 PF14090.6 AHV93441.1 - 0.09 12.5 0.0 0.19 11.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Methyltransf_32 PF13679.6 AHV93442.1 - 4e-42 143.9 0.0 6.6e-42 143.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 AHV93442.1 - 6.9e-10 38.9 0.0 1e-09 38.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain RTP PF02334.16 AHV93442.1 - 0.066 13.8 0.3 9.8 6.8 0.0 2.6 3 0 0 3 3 3 0 Replication terminator protein Methyltransf_25 PF13649.6 AHV93442.1 - 0.089 13.5 0.1 0.24 12.1 0.0 1.8 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_11 PF08241.12 AHV93442.1 - 0.13 12.9 0.0 0.27 11.9 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain LysR_substrate PF03466.20 AHV93443.1 - 1.7e-36 125.6 2.3 2.1e-36 125.2 2.3 1.1 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 AHV93443.1 - 6.9e-18 64.4 2.2 2.8e-17 62.4 0.4 2.8 3 0 0 3 3 3 1 Bacterial regulatory helix-turn-helix protein, lysR family ChaC PF04752.12 AHV93444.1 - 3.5e-10 40.2 0.0 4.1e-10 40.0 0.0 1.0 1 0 0 1 1 1 1 ChaC-like protein Nramp PF01566.18 AHV93445.1 - 0.00018 20.6 1.3 0.00019 20.6 1.3 1.0 1 0 0 1 1 1 1 Natural resistance-associated macrophage protein Sod_Fe_C PF02777.18 AHV93446.1 - 1.7e-39 134.1 0.2 1.7e-39 134.1 0.2 2.4 2 1 1 3 3 3 1 Iron/manganese superoxide dismutases, C-terminal domain Sod_Fe_N PF00081.22 AHV93446.1 - 3.3e-35 120.4 1.1 6.1e-35 119.6 1.1 1.4 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, alpha-hairpin domain PepSY_TM PF03929.16 AHV93447.1 - 1e-48 166.5 4.6 1.2e-48 166.3 4.6 1.0 1 0 0 1 1 1 1 PepSY-associated TM region PepSY PF03413.19 AHV93447.1 - 0.02 15.4 0.1 2.5 8.7 0.0 2.5 3 0 0 3 3 3 0 Peptidase propeptide and YPEB domain MDMPI_C PF07398.11 AHV93447.1 - 0.041 14.7 3.5 0.087 13.7 1.2 2.5 2 0 0 2 2 2 0 MDMPI C-terminal domain Bac_rhodopsin PF01036.18 AHV93447.1 - 0.052 13.1 0.2 0.052 13.1 0.2 1.9 2 1 0 2 2 2 0 Bacteriorhodopsin-like protein DUF4405 PF14358.6 AHV93447.1 - 0.13 12.8 0.2 0.13 12.8 0.2 3.2 3 1 1 4 4 4 0 Domain of unknown function (DUF4405) Virul_fac_BrkB PF03631.15 AHV93448.1 - 8.3e-57 192.7 21.8 1.1e-56 192.3 21.8 1.1 1 0 0 1 1 1 1 Virulence factor BrkB BPD_transp_1 PF00528.22 AHV93449.1 - 2.1e-20 73.3 17.7 2.1e-20 73.3 17.7 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF2649 PF10854.8 AHV93449.1 - 1.8 8.9 7.4 0.46 10.8 0.3 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2649) DUF4577 PF15145.6 AHV93449.1 - 2.4 8.2 5.3 6.2 6.9 0.3 3.0 2 1 0 3 3 3 0 Domain of unknown function (DUF4577) Amidase PF01425.21 AHV93450.1 - 1.4e-143 479.1 0.2 1.7e-143 478.9 0.2 1.0 1 0 0 1 1 1 1 Amidase rve PF00665.26 AHV93451.1 - 1.7e-12 47.6 0.0 2.6e-12 47.0 0.0 1.2 1 0 0 1 1 1 1 Integrase core domain Rieske PF00355.26 AHV93452.1 - 2.2e-18 66.0 0.5 2.9e-18 65.6 0.5 1.2 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.6 AHV93452.1 - 1e-07 31.9 0.0 1.2e-07 31.6 0.0 1.1 1 0 0 1 1 1 1 Rieske-like [2Fe-2S] domain HpcH_HpaI PF03328.14 AHV93453.1 - 2.6e-18 66.0 0.0 3e-18 65.8 0.0 1.0 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family C-C_Bond_Lyase PF15617.6 AHV93453.1 - 0.02 14.1 0.0 0.027 13.7 0.0 1.1 1 0 0 1 1 1 0 C-C_Bond_Lyase of the TIM-Barrel fold LysR_substrate PF03466.20 AHV93455.1 - 1e-32 113.2 0.3 1.4e-32 112.8 0.3 1.2 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 AHV93455.1 - 4.6e-19 68.1 1.9 1.1e-18 66.9 1.9 1.7 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family AAA_PrkA PF08298.11 AHV93456.1 - 1.3e-95 320.4 0.0 1.7e-95 320.0 0.0 1.2 1 0 0 1 1 1 1 PrkA AAA domain PrkA PF06798.12 AHV93456.1 - 1.2e-73 247.9 0.6 1.7e-73 247.5 0.6 1.2 1 0 0 1 1 1 1 PrkA serine protein kinase C-terminal domain TctC PF03401.14 AHV93457.1 - 1.9e-78 263.3 0.0 2.2e-78 263.1 0.0 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor TPR_16 PF13432.6 AHV93458.1 - 1.9e-10 41.2 15.5 1.7e-07 31.8 7.1 1.5 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_2 PF07719.17 AHV93458.1 - 4.8e-09 35.6 2.8 8.2e-05 22.4 0.5 2.3 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_11 PF13414.6 AHV93458.1 - 3.5e-08 33.0 0.2 5.5e-08 32.4 0.2 1.5 1 0 0 1 1 1 1 TPR repeat TPR_19 PF14559.6 AHV93458.1 - 3.6e-07 30.6 3.1 6.2e-07 29.8 0.8 2.0 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_17 PF13431.6 AHV93458.1 - 7.7e-07 29.1 0.7 2.9e-05 24.1 0.0 2.3 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_1 PF00515.28 AHV93458.1 - 3.8e-06 26.5 0.6 0.00014 21.5 0.2 2.2 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_14 PF13428.6 AHV93458.1 - 5.3e-06 26.8 7.1 0.002 18.8 0.6 2.9 1 1 2 3 3 3 2 Tetratricopeptide repeat TPR_8 PF13181.6 AHV93458.1 - 0.00031 20.7 0.2 0.0084 16.2 0.1 2.3 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_20 PF14561.6 AHV93458.1 - 0.00067 19.9 0.5 0.00089 19.5 0.4 1.4 1 1 0 1 1 1 1 Tetratricopeptide repeat TPR_4 PF07721.14 AHV93458.1 - 0.0012 19.3 7.6 0.043 14.4 2.4 2.7 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_12 PF13424.6 AHV93458.1 - 0.0099 16.1 4.1 0.093 13.0 0.6 2.2 1 1 1 2 2 2 1 Tetratricopeptide repeat TPR_6 PF13174.6 AHV93458.1 - 0.014 16.0 2.1 5.5 7.8 0.2 2.6 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_7 PF13176.6 AHV93458.1 - 0.018 15.0 1.0 0.056 13.5 0.1 2.1 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_21 PF09976.9 AHV93458.1 - 0.025 14.3 1.9 0.048 13.4 1.9 1.4 1 1 0 1 1 1 0 Tetratricopeptide repeat-like domain TPR_9 PF13371.6 AHV93458.1 - 0.13 12.4 4.3 0.42 10.8 0.3 1.9 1 1 1 2 2 2 0 Tetratricopeptide repeat GDC-P PF02347.16 AHV93459.1 - 6.5e-196 651.3 0.0 2.1e-181 603.5 0.0 2.1 2 0 0 2 2 2 2 Glycine cleavage system P-protein Beta_elim_lyase PF01212.21 AHV93459.1 - 5.9e-06 25.8 0.1 1.7e-05 24.2 0.0 1.8 2 0 0 2 2 2 1 Beta-eliminating lyase Aminotran_5 PF00266.19 AHV93459.1 - 1.5e-05 24.2 0.3 4.3e-05 22.6 0.1 1.7 2 0 0 2 2 2 1 Aminotransferase class-V Methyltransf_24 PF13578.6 AHV93459.1 - 0.045 14.8 0.1 0.18 12.8 0.1 2.0 1 0 0 1 1 1 0 Methyltransferase domain Cyt_bd_oxida_I PF01654.17 AHV93460.1 - 5.2e-176 585.3 28.4 5.9e-176 585.2 28.4 1.0 1 0 0 1 1 1 1 Cytochrome bd terminal oxidase subunit I DDE_Tnp_ISL3 PF01610.17 AHV93461.1 - 6.7e-65 219.2 1.2 9.3e-65 218.7 0.3 1.6 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV93461.1 - 1.4e-11 43.6 0.1 3.6e-11 42.3 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV93461.1 - 5.3e-09 36.6 11.2 1.1e-08 35.6 11.2 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV93461.1 - 0.0056 16.7 0.2 0.016 15.3 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain NOB1_Zn_bind PF08772.11 AHV93461.1 - 0.017 15.2 0.2 1.2 9.3 0.0 2.5 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like SLT_L PF14718.6 AHV93461.1 - 0.023 14.8 1.3 0.023 14.8 1.3 1.8 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain zf-IS66 PF13005.7 AHV93461.1 - 8.2 6.9 9.6 3.6 8.1 6.6 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 DDE_Tnp_ISL3 PF01610.17 AHV93462.1 - 7.3e-65 219.0 1.3 1.1e-64 218.4 0.3 1.7 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV93462.1 - 1.4e-11 43.6 0.1 3.6e-11 42.3 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV93462.1 - 5.4e-09 36.6 11.2 1.1e-08 35.6 11.2 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV93462.1 - 0.0056 16.7 0.2 0.016 15.3 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain SLT_L PF14718.6 AHV93462.1 - 0.016 15.3 1.5 0.016 15.3 1.5 1.8 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain ABC_tran PF00005.27 AHV93463.1 - 8.1e-33 113.8 0.0 1.1e-32 113.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 AHV93463.1 - 4e-14 53.1 1.3 9.1e-07 29.0 0.2 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 AHV93463.1 - 8e-05 22.3 0.2 0.00015 21.4 0.2 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 AHV93463.1 - 0.00011 22.1 0.0 0.00023 21.0 0.0 1.6 2 0 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.19 AHV93463.1 - 0.00052 19.5 0.7 0.0054 16.2 0.7 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_27 PF13514.6 AHV93463.1 - 0.001 18.7 0.1 0.0019 17.8 0.1 1.4 1 0 0 1 1 1 1 AAA domain MukB PF04310.12 AHV93463.1 - 0.0025 17.6 0.2 0.0043 16.9 0.2 1.2 1 0 0 1 1 1 1 MukB N-terminal AAA_22 PF13401.6 AHV93463.1 - 0.0045 17.3 0.1 0.029 14.6 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 AHV93463.1 - 0.0087 16.5 0.0 0.014 15.8 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 AHV93463.1 - 0.011 16.2 0.3 0.024 15.2 0.3 1.4 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 AHV93463.1 - 0.018 15.3 0.4 0.2 11.9 0.4 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit ABC_ATPase PF09818.9 AHV93463.1 - 0.019 13.8 0.1 4.2 6.0 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class MMR_HSR1 PF01926.23 AHV93463.1 - 0.028 14.5 0.1 0.15 12.2 0.1 1.9 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_30 PF13604.6 AHV93463.1 - 0.029 14.1 0.8 0.074 12.8 0.7 1.8 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 AHV93463.1 - 0.041 13.8 0.1 0.073 13.0 0.1 1.4 1 0 0 1 1 1 0 RsgA GTPase Dynamin_N PF00350.23 AHV93463.1 - 0.062 13.3 0.0 0.17 11.9 0.0 1.6 2 0 0 2 2 2 0 Dynamin family NB-ARC PF00931.22 AHV93463.1 - 0.11 11.7 0.0 0.18 10.9 0.0 1.5 1 1 0 1 1 1 0 NB-ARC domain AAA_25 PF13481.6 AHV93463.1 - 0.19 11.3 0.9 0.55 9.8 0.3 1.9 2 1 0 2 2 2 0 AAA domain rve PF00665.26 AHV93464.1 - 1.9e-32 111.9 0.1 3.4e-32 111.1 0.1 1.4 1 0 0 1 1 1 1 Integrase core domain LZ_Tnp_IS481 PF13011.6 AHV93464.1 - 5.9e-22 78.0 2.7 9e-20 71.0 0.4 2.6 1 1 1 2 2 2 1 leucine-zipper of insertion element IS481 HTH_23 PF13384.6 AHV93464.1 - 4.9e-17 61.2 4.4 1e-07 31.5 0.1 2.7 2 0 0 2 2 2 2 Homeodomain-like domain HTH_28 PF13518.6 AHV93464.1 - 4e-16 58.9 5.1 5.1e-11 42.5 0.1 3.3 3 0 0 3 3 3 2 Helix-turn-helix domain rve_3 PF13683.6 AHV93464.1 - 5.7e-13 48.5 1.0 9.7e-13 47.7 0.5 1.7 2 0 0 2 2 1 1 Integrase core domain HTH_29 PF13551.6 AHV93464.1 - 7.6e-12 45.1 0.6 2.2e-06 27.6 0.0 2.6 2 0 0 2 2 2 2 Winged helix-turn helix HTH_32 PF13565.6 AHV93464.1 - 5e-11 43.0 2.8 7.9e-11 42.4 0.7 2.3 2 0 0 2 2 2 1 Homeodomain-like domain HTH_38 PF13936.6 AHV93464.1 - 1.5e-06 27.8 0.9 4.4e-06 26.3 0.5 2.1 2 0 0 2 2 1 1 Helix-turn-helix domain MarR_2 PF12802.7 AHV93464.1 - 6.2e-06 26.0 3.1 8.2e-05 22.4 1.2 2.6 2 0 0 2 2 2 1 MarR family HTH_31 PF13560.6 AHV93464.1 - 1.4e-05 25.3 2.2 0.00058 20.2 0.6 3.3 3 0 0 3 3 3 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 AHV93464.1 - 2.3e-05 24.0 0.1 0.0056 16.3 0.3 2.5 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_Tnp_ISL3 PF13542.6 AHV93464.1 - 3e-05 23.4 5.5 0.0017 17.7 0.6 3.6 4 0 0 4 4 3 1 Helix-turn-helix domain of transposase family ISL3 Sigma70_r4 PF04545.16 AHV93464.1 - 4.1e-05 23.0 0.1 0.00049 19.6 0.2 2.3 2 0 0 2 2 2 1 Sigma-70, region 4 YdaS_antitoxin PF15943.5 AHV93464.1 - 0.00018 21.3 0.3 0.21 11.5 0.0 2.8 2 0 0 2 2 2 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_24 PF13412.6 AHV93464.1 - 0.00022 20.7 0.2 0.0018 17.8 0.3 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_3 PF01381.22 AHV93464.1 - 0.00025 21.1 0.7 0.012 15.7 0.3 2.6 2 0 0 2 2 2 1 Helix-turn-helix HTH_Crp_2 PF13545.6 AHV93464.1 - 0.00033 20.6 0.3 0.0024 17.8 0.2 2.3 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain Trp_repressor PF01371.19 AHV93464.1 - 0.00064 19.8 0.2 0.0053 16.9 0.1 2.2 2 0 0 2 2 2 1 Trp repressor protein CENP-B_N PF04218.13 AHV93464.1 - 0.0013 18.4 0.0 1.4 8.6 0.1 2.3 2 0 0 2 2 2 2 CENP-B N-terminal DNA-binding domain LacI PF00356.21 AHV93464.1 - 0.0014 18.4 1.8 0.0041 16.9 0.7 2.3 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family Fe_dep_repress PF01325.19 AHV93464.1 - 0.0016 18.6 0.0 0.029 14.6 0.0 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.20 AHV93464.1 - 0.0017 18.2 0.0 0.81 9.6 0.0 2.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_psq PF05225.16 AHV93464.1 - 0.0018 17.9 0.7 2 8.2 0.4 2.9 3 0 0 3 3 3 1 helix-turn-helix, Psq domain HTH_IclR PF09339.10 AHV93464.1 - 0.0019 18.0 1.3 0.031 14.1 0.7 2.5 2 0 0 2 2 2 1 IclR helix-turn-helix domain SpoIIID PF12116.8 AHV93464.1 - 0.002 18.2 0.0 0.93 9.6 0.0 2.4 2 0 0 2 2 2 1 Stage III sporulation protein D HTH_11 PF08279.12 AHV93464.1 - 0.0022 17.9 0.5 0.013 15.4 0.5 2.2 2 0 0 2 2 2 1 HTH domain RepB PF07506.11 AHV93464.1 - 0.0032 17.6 0.2 0.48 10.5 0.1 2.3 1 1 1 2 2 2 1 RepB plasmid partitioning protein HTH_AsnC-type PF13404.6 AHV93464.1 - 0.0032 17.2 2.7 0.04 13.8 1.1 2.7 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain GntR PF00392.21 AHV93464.1 - 0.0041 16.7 0.8 0.44 10.2 0.3 2.5 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_17 PF12728.7 AHV93464.1 - 0.0042 17.2 0.7 5.4 7.3 0.0 3.1 3 1 1 4 4 2 0 Helix-turn-helix domain HTH_Tnp_1 PF01527.20 AHV93464.1 - 0.0045 17.3 0.4 0.091 13.1 0.0 2.5 1 1 1 2 2 2 1 Transposase HTH_10 PF04967.12 AHV93464.1 - 0.0062 16.3 0.1 0.043 13.6 0.2 2.3 2 0 0 2 2 2 1 HTH DNA binding domain HTH_35 PF13693.6 AHV93464.1 - 0.0074 16.3 1.6 0.064 13.3 0.6 2.8 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding UPF0175 PF03683.13 AHV93464.1 - 0.011 15.4 0.4 0.087 12.5 0.1 2.4 2 1 1 3 3 2 0 Uncharacterised protein family (UPF0175) HTH_30 PF13556.6 AHV93464.1 - 0.011 15.5 0.1 1.7 8.5 0.0 2.6 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain HTH_37 PF13744.6 AHV93464.1 - 0.012 15.5 0.1 0.11 12.5 0.1 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Tnp_4 PF13613.6 AHV93464.1 - 0.014 15.1 0.1 0.059 13.1 0.0 2.0 2 0 0 2 2 1 0 Helix-turn-helix of DDE superfamily endonuclease HTH_36 PF13730.6 AHV93464.1 - 0.015 15.2 0.1 0.51 10.3 0.0 2.9 3 0 0 3 3 3 0 Helix-turn-helix domain KORA PF16509.5 AHV93464.1 - 0.024 14.9 0.1 3.1 8.1 0.0 3.1 3 0 0 3 3 3 0 TrfB plasmid transcriptional repressor MarR PF01047.22 AHV93464.1 - 0.038 13.9 0.1 0.13 12.3 0.1 1.8 2 0 0 2 2 1 0 MarR family P22_Cro PF14549.6 AHV93464.1 - 0.04 13.8 1.6 8.4 6.3 0.1 2.5 2 0 0 2 2 2 0 DNA-binding transcriptional regulator Cro Crp PF00325.20 AHV93464.1 - 0.043 13.5 3.2 0.055 13.1 0.5 2.5 3 0 0 3 3 3 0 Bacterial regulatory proteins, crp family DUF746 PF05344.11 AHV93464.1 - 0.067 13.0 0.1 0.86 9.5 0.0 2.4 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) HTH_1 PF00126.27 AHV93464.1 - 0.088 12.8 2.9 4.2 7.4 0.5 2.6 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_26 PF13443.6 AHV93464.1 - 0.13 12.7 0.0 3.1 8.3 0.1 2.8 3 0 0 3 3 3 0 Cro/C1-type HTH DNA-binding domain Sigma54_DBD PF04552.13 AHV93464.1 - 0.14 11.8 0.1 0.26 11.0 0.1 1.3 1 0 0 1 1 1 0 Sigma-54, DNA binding domain HTH_8 PF02954.19 AHV93464.1 - 0.16 11.8 0.9 13 5.7 0.7 2.6 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family HTH_Tnp_Tc3_2 PF01498.18 AHV93464.1 - 0.19 12.0 2.5 0.38 11.0 0.1 2.7 3 0 0 3 3 2 0 Transposase HTH_33 PF13592.6 AHV93464.1 - 0.28 10.8 2.5 2.5 7.8 0.1 3.4 4 0 0 4 4 2 0 Winged helix-turn helix MerR PF00376.23 AHV93464.1 - 2.3 8.0 8.9 2.8 7.8 0.0 3.7 5 0 0 5 5 2 0 MerR family regulatory protein TonB_dep_Rec PF00593.24 AHV93465.1 - 1.6e-54 186.5 23.0 1.6e-54 186.5 23.0 2.0 1 1 1 2 2 2 2 TonB dependent receptor Plug PF07715.15 AHV93465.1 - 1.4e-15 57.8 2.2 9.2e-15 55.1 0.9 2.5 2 0 0 2 2 2 1 TonB-dependent Receptor Plug Domain OMP_b-brl_3 PF14905.6 AHV93465.1 - 3.1e-07 29.7 2.6 4.3e-06 26.0 0.0 2.9 3 0 0 3 3 3 1 Outer membrane protein beta-barrel family PTS_EIIB PF00367.20 AHV93466.1 - 0.045 13.2 0.1 0.06 12.9 0.1 1.2 1 0 0 1 1 1 0 phosphotransferase system, EIIB Hpr_kinase_C PF07475.12 AHV93467.1 - 1.4e-64 216.8 0.2 1.9e-64 216.3 0.2 1.2 1 0 0 1 1 1 1 HPr Serine kinase C-terminal domain Hpr_kinase_N PF02603.16 AHV93467.1 - 7.5e-23 80.9 0.0 1.6e-22 79.8 0.0 1.6 2 0 0 2 2 2 1 HPr Serine kinase N terminus PucR PF07905.11 AHV93467.1 - 0.0063 16.8 0.0 0.018 15.3 0.0 1.9 1 0 0 1 1 1 1 Purine catabolism regulatory protein-like family DRTGG PF07085.12 AHV93467.1 - 0.022 14.5 0.0 0.052 13.3 0.0 1.6 1 0 0 1 1 1 0 DRTGG domain AAA_16 PF13191.6 AHV93467.1 - 0.033 14.6 0.1 0.061 13.7 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain Sigma54_activat PF00158.26 AHV93467.1 - 0.1 12.3 0.2 0.22 11.2 0.0 1.6 2 0 0 2 2 2 0 Sigma-54 interaction domain End_beta_barrel PF12195.8 AHV93467.1 - 0.18 11.8 0.1 1.1 9.2 0.0 2.0 2 0 0 2 2 2 0 Beta barrel domain of bacteriophage endosialidase AAA_29 PF13555.6 AHV93467.1 - 0.21 11.4 0.2 0.48 10.2 0.2 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain UPF0061 PF02696.14 AHV93468.1 - 6.1e-128 427.5 0.0 6.9e-128 427.3 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized ACR, YdiU/UPF0061 family DUF2939 PF11159.8 AHV93468.1 - 0.026 15.0 3.0 0.08 13.4 1.8 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2939) tRNA-synt_2b PF00587.25 AHV93469.1 - 6.6e-42 143.5 0.0 1.2e-41 142.7 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 AHV93469.1 - 6.1e-20 71.2 0.0 4.4e-19 68.4 0.0 2.3 2 0 0 2 2 2 1 Anticodon binding domain tRNA_SAD PF07973.14 AHV93469.1 - 1.1e-15 57.4 0.0 2.2e-15 56.5 0.0 1.5 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain TGS PF02824.21 AHV93469.1 - 6.5e-10 38.9 0.0 3.3e-09 36.7 0.0 2.3 2 0 0 2 2 2 1 TGS domain tRNA-synt_His PF13393.6 AHV93469.1 - 0.029 13.6 0.0 0.047 13.0 0.0 1.3 1 0 0 1 1 1 0 Histidyl-tRNA synthetase Phosphoesterase PF04185.14 AHV93470.1 - 6.9e-95 318.2 0.0 8.3e-95 318.0 0.0 1.0 1 0 0 1 1 1 1 Phosphoesterase family MaoC_dehydrat_N PF13452.6 AHV93471.1 - 1.2e-09 38.4 0.0 1.2e-08 35.2 0.0 2.1 2 0 0 2 2 2 1 N-terminal half of MaoC dehydratase AMP-binding PF00501.28 AHV93472.1 - 3.6e-72 243.3 0.0 4.9e-72 242.9 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme UDPG_MGDP_dh_N PF03721.14 AHV93473.1 - 7.2e-35 120.3 0.0 1.3e-34 119.4 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 AHV93473.1 - 2.9e-24 85.1 0.0 5.3e-24 84.2 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 AHV93473.1 - 2.6e-21 76.0 0.1 4.9e-20 71.9 0.0 2.3 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ApbA PF02558.16 AHV93473.1 - 0.00034 20.3 0.0 0.0047 16.6 0.0 2.2 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA NAD_binding_2 PF03446.15 AHV93473.1 - 0.00081 19.6 0.0 0.029 14.5 0.0 2.6 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase TrkA_N PF02254.18 AHV93473.1 - 0.016 15.5 2.7 0.1 12.9 0.1 2.7 2 1 0 2 2 2 0 TrkA-N domain RMI2 PF16100.5 AHV93473.1 - 0.028 14.2 0.1 0.055 13.3 0.1 1.4 1 0 0 1 1 1 0 RecQ-mediated genome instability protein 2 NAD_binding_11 PF14833.6 AHV93473.1 - 0.15 12.3 0.8 0.3 11.3 0.8 1.5 1 0 0 1 1 1 0 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Methyltransf_25 PF13649.6 AHV93473.1 - 0.15 12.7 0.0 0.95 10.2 0.0 2.2 2 0 0 2 2 2 0 Methyltransferase domain ABC_tran PF00005.27 AHV93474.1 - 1.6e-28 99.9 0.0 2.4e-28 99.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 AHV93474.1 - 4e-19 68.9 0.0 8.3e-19 67.9 0.0 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region ATP-synt_A PF00119.20 AHV93475.1 - 1.8e-55 188.2 17.9 2.1e-55 188.0 17.9 1.0 1 0 0 1 1 1 1 ATP synthase A chain ECF-ribofla_trS PF07155.12 AHV93475.1 - 0.12 12.4 16.2 0.21 11.6 10.8 2.3 2 0 0 2 2 2 0 ECF-type riboflavin transporter, S component zf-ISL3 PF14690.6 AHV93476.1 - 7.8e-10 39.3 11.2 1.2e-09 38.6 11.2 1.3 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NOB1_Zn_bind PF08772.11 AHV93476.1 - 0.00077 19.6 0.1 0.2 11.8 0.0 2.3 2 0 0 2 2 2 2 Nin one binding (NOB1) Zn-ribbon like Zn-ribbon_8 PF09723.10 AHV93476.1 - 0.038 14.1 2.5 5 7.3 0.1 2.5 2 0 0 2 2 2 0 Zinc ribbon domain HTH_Tnp_ISL3 PF13542.6 AHV93476.1 - 0.085 12.3 1.2 0.11 11.9 0.1 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 Nudix_N_2 PF14803.6 AHV93476.1 - 0.12 12.3 5.9 3.2 7.7 0.2 2.7 3 0 0 3 3 3 0 Nudix N-terminal zf-IS66 PF13005.7 AHV93476.1 - 0.26 11.7 7.3 0.61 10.5 7.1 1.7 1 1 0 1 1 1 0 zinc-finger binding domain of transposase IS66 Viral_DNA_bp PF00747.17 AHV93476.1 - 0.31 8.1 0.5 0.37 7.9 0.5 1.0 1 0 0 1 1 1 0 ssDNA binding protein ADSL_C PF10397.9 AHV93477.1 - 0.00017 22.1 0.3 0.00026 21.5 0.3 1.3 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminus ThiJ_like PF17124.5 AHV93477.1 - 0.015 15.0 0.0 0.024 14.3 0.0 1.3 1 0 0 1 1 1 0 ThiJ/PfpI family-like Flavodoxin_1 PF00258.25 AHV93478.1 - 6.4e-25 88.0 0.0 9.8e-25 87.4 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin NAD_binding_1 PF00175.21 AHV93478.1 - 4.4e-10 40.2 0.0 9.7e-10 39.1 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain ABC_tran PF00005.27 AHV93480.1 - 1.8e-26 93.3 0.0 2.6e-26 92.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 AHV93480.1 - 2.7e-05 24.6 0.0 4.9e-05 23.8 0.0 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region SMC_N PF02463.19 AHV93480.1 - 7.3e-05 22.3 0.4 0.00044 19.8 0.4 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 AHV93480.1 - 0.00038 20.4 1.6 0.00047 20.1 0.1 1.8 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system TniB PF05621.11 AHV93480.1 - 0.046 13.1 0.1 0.34 10.3 0.0 2.1 2 0 0 2 2 2 0 Bacterial TniB protein AAA_22 PF13401.6 AHV93480.1 - 0.073 13.3 4.3 3.6 7.9 4.3 2.3 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 AHV93480.1 - 0.089 12.4 2.3 0.76 9.3 2.3 2.1 1 1 0 1 1 1 0 AAA domain AAA_7 PF12775.7 AHV93480.1 - 0.15 11.6 0.1 0.39 10.2 0.1 1.6 2 0 0 2 2 2 0 P-loop containing dynein motor region AAA_29 PF13555.6 AHV93480.1 - 0.17 11.7 0.1 0.31 10.8 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF2075 PF09848.9 AHV93480.1 - 0.19 11.0 0.0 0.26 10.5 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) ABC-3 PF00950.17 AHV93481.1 - 2e-73 247.1 27.8 2.3e-73 246.9 27.8 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.18 AHV93481.1 - 4.2e-05 22.7 24.2 4.2e-05 22.7 24.2 1.4 1 1 0 1 1 1 1 FecCD transport family COX1 PF00115.20 AHV93482.1 - 2.5e-156 520.9 77.7 2.9e-156 520.7 77.7 1.0 1 0 0 1 1 1 1 Cytochrome C and Quinol oxidase polypeptide I Aminotran_1_2 PF00155.21 AHV93483.1 - 1.9e-49 168.8 0.0 2.1e-49 168.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 AHV93483.1 - 0.00065 18.7 0.0 0.001 18.1 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V HTH_28 PF13518.6 AHV93483.1 - 0.03 14.4 0.0 0.13 12.5 0.0 2.1 1 0 0 1 1 1 0 Helix-turn-helix domain CoA_trans PF01144.23 AHV93484.1 - 5.2e-81 271.2 0.2 5.9e-81 271.0 0.2 1.0 1 0 0 1 1 1 1 Coenzyme A transferase Mal_decarbox_Al PF16957.5 AHV93484.1 - 0.00021 19.8 0.1 0.00028 19.4 0.1 1.1 1 0 0 1 1 1 1 Malonate decarboxylase, alpha subunit, transporter AcetylCoA_hydro PF02550.15 AHV93484.1 - 0.073 13.1 0.0 0.26 11.3 0.0 1.8 2 0 0 2 2 2 0 Acetyl-CoA hydrolase/transferase N-terminal domain BPD_transp_1 PF00528.22 AHV93485.1 - 1.4e-23 83.6 9.4 2.1e-23 83.0 9.4 1.2 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component DUF3767 PF12597.8 AHV93485.1 - 0.19 11.6 0.4 0.35 10.7 0.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3767) Lyase_1 PF00206.20 AHV93486.1 - 3.8e-102 341.9 0.3 5.5e-102 341.4 0.3 1.2 1 0 0 1 1 1 1 Lyase FumaraseC_C PF10415.9 AHV93486.1 - 5.4e-26 90.8 0.0 1.2e-25 89.7 0.0 1.6 1 0 0 1 1 1 1 Fumarase C C-terminus Thiolase_N PF00108.23 AHV93487.1 - 8.6e-71 238.3 2.6 1.4e-70 237.7 2.6 1.3 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 AHV93487.1 - 5.6e-44 148.7 0.3 5.6e-44 148.7 0.3 1.9 2 0 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 AHV93487.1 - 6.2e-05 22.7 2.3 0.00012 21.8 0.4 2.3 2 1 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.10 AHV93487.1 - 0.022 14.6 0.2 3.7 7.5 0.2 2.6 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ACP_syn_III_C PF08541.10 AHV93487.1 - 0.045 13.9 1.4 0.12 12.5 0.1 2.4 3 0 0 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DDE_Tnp_ISL3 PF01610.17 AHV93488.1 - 7.9e-65 218.9 1.2 1.1e-64 218.4 0.3 1.6 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV93488.1 - 1.4e-11 43.6 0.1 3.6e-11 42.3 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV93488.1 - 5.3e-09 36.6 11.2 1.1e-08 35.6 11.2 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV93488.1 - 0.0056 16.7 0.2 0.016 15.3 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain SLT_L PF14718.6 AHV93488.1 - 0.016 15.3 1.5 0.016 15.3 1.5 1.8 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain NOB1_Zn_bind PF08772.11 AHV93488.1 - 0.017 15.2 0.2 1.2 9.3 0.0 2.5 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-IS66 PF13005.7 AHV93488.1 - 8.2 6.9 9.6 3.6 8.1 6.6 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Multi_Drug_Res PF00893.19 AHV93489.1 - 6.9e-32 110.0 11.4 8.8e-32 109.6 11.4 1.1 1 0 0 1 1 1 1 Small Multidrug Resistance protein DUF5381 PF17353.2 AHV93489.1 - 0.16 11.7 9.3 0.13 12.0 2.9 2.2 1 1 1 2 2 2 0 Family of unknown function (DUF5381) Borrelia_P13 PF05628.12 AHV93489.1 - 0.86 9.6 6.8 0.54 10.2 4.9 1.6 1 1 1 2 2 2 0 Borrelia membrane protein P13 Flp_Fap PF04964.14 AHV93490.1 - 0.007 16.2 1.8 0.012 15.5 1.8 1.4 1 0 0 1 1 1 1 Flp/Fap pilin component DUF3613 PF12266.8 AHV93490.1 - 0.03 14.1 0.2 0.052 13.3 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3613) Arch_flagellin PF01917.16 AHV93490.1 - 0.043 14.0 5.1 0.048 13.9 5.1 1.2 1 0 0 1 1 1 0 Archaebacterial flagellin N_methyl PF07963.12 AHV93490.1 - 0.057 13.0 0.1 0.083 12.5 0.1 1.3 1 0 0 1 1 1 0 Prokaryotic N-terminal methylation motif PsbN PF02468.15 AHV93490.1 - 0.084 12.7 0.6 0.13 12.2 0.6 1.3 1 0 0 1 1 1 0 Photosystem II reaction centre N protein (psbN) ABC_tran PF00005.27 AHV93491.1 - 5.4e-33 114.4 0.0 1.1e-32 113.4 0.0 1.5 1 0 0 1 1 1 1 ABC transporter NIL PF09383.10 AHV93491.1 - 4.9e-15 55.1 0.1 9.8e-15 54.2 0.1 1.5 1 0 0 1 1 1 1 NIL domain AAA_21 PF13304.6 AHV93491.1 - 6.8e-09 36.0 0.2 0.002 18.0 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 AHV93491.1 - 4.5e-05 23.0 0.2 0.0027 17.2 0.2 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 AHV93491.1 - 6.9e-05 23.1 0.1 0.00029 21.1 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 AHV93491.1 - 0.00057 20.5 0.1 0.00082 19.9 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 AHV93491.1 - 0.00073 19.2 0.0 0.0014 18.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.6 AHV93491.1 - 0.0059 16.2 1.3 1.8 8.1 0.1 2.8 3 1 0 3 3 3 2 AAA domain RsgA_GTPase PF03193.16 AHV93491.1 - 0.0069 16.3 0.0 0.017 15.0 0.0 1.6 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 AHV93491.1 - 0.011 16.2 0.5 0.033 14.6 0.4 2.2 1 1 0 1 1 1 0 AAA ATPase domain ABC_ATPase PF09818.9 AHV93491.1 - 0.017 13.9 3.1 3.2 6.4 0.1 2.9 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA PF00004.29 AHV93491.1 - 0.052 14.0 0.1 12 6.3 0.0 2.3 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) TniB PF05621.11 AHV93491.1 - 0.091 12.2 0.1 2.2 7.6 0.1 2.2 2 0 0 2 2 2 0 Bacterial TniB protein Tail_P2_I PF09684.10 AHV93491.1 - 0.12 12.3 0.5 0.72 9.8 0.1 2.1 2 0 0 2 2 2 0 Phage tail protein (Tail_P2_I) oligo_HPY PF08352.12 AHV93491.1 - 0.13 12.8 0.0 0.25 11.9 0.0 1.5 1 0 0 1 1 1 0 Oligopeptide/dipeptide transporter, C-terminal region MIT_C PF16565.5 AHV93491.1 - 0.14 12.1 0.0 0.23 11.4 0.0 1.2 1 0 0 1 1 1 0 Phospholipase D-like domain at C-terminus of MIT rve PF00665.26 AHV93492.1 - 2.9e-32 111.3 0.7 4.3e-32 110.8 0.1 1.6 2 0 0 2 2 1 1 Integrase core domain LZ_Tnp_IS481 PF13011.6 AHV93492.1 - 1.9e-21 76.3 2.6 1.1e-19 70.7 0.4 2.6 1 1 1 2 2 2 1 leucine-zipper of insertion element IS481 rve_3 PF13683.6 AHV93492.1 - 5.1e-19 67.8 2.7 1.2e-18 66.6 2.7 1.7 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.6 AHV93492.1 - 1.6e-16 59.6 4.2 1.2e-07 31.3 0.1 2.7 2 0 0 2 2 2 2 Homeodomain-like domain HTH_28 PF13518.6 AHV93492.1 - 5.9e-15 55.1 6.1 5.9e-11 42.3 0.1 3.4 4 0 0 4 4 3 2 Helix-turn-helix domain HTH_29 PF13551.6 AHV93492.1 - 1.8e-11 43.9 0.5 2.6e-06 27.4 0.0 2.6 2 0 0 2 2 2 2 Winged helix-turn helix HTH_32 PF13565.6 AHV93492.1 - 3.8e-10 40.2 0.7 3.8e-10 40.2 0.7 2.4 2 1 0 2 2 2 1 Homeodomain-like domain HTH_38 PF13936.6 AHV93492.1 - 5.4e-06 26.1 0.5 1.9e-05 24.3 0.4 2.1 2 0 0 2 2 1 1 Helix-turn-helix domain MarR_2 PF12802.7 AHV93492.1 - 3e-05 23.8 3.0 0.00037 20.3 1.1 2.6 2 0 0 2 2 2 1 MarR family HTH_31 PF13560.6 AHV93492.1 - 6.8e-05 23.1 1.5 0.0033 17.8 0.3 3.2 3 0 0 3 3 3 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 AHV93492.1 - 0.00013 21.4 0.1 0.0016 17.9 0.2 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 YdaS_antitoxin PF15943.5 AHV93492.1 - 0.0003 20.6 0.2 0.33 10.9 0.0 2.8 2 0 0 2 2 2 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT Sigma70_r4_2 PF08281.12 AHV93492.1 - 0.00043 19.9 0.1 0.092 12.4 0.2 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_Tnp_ISL3 PF13542.6 AHV93492.1 - 0.00057 19.3 8.6 0.0047 16.3 0.6 3.9 4 0 0 4 4 3 1 Helix-turn-helix domain of transposase family ISL3 HTH_24 PF13412.6 AHV93492.1 - 0.00062 19.3 0.2 0.0045 16.5 0.3 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_3 PF01381.22 AHV93492.1 - 0.00094 19.2 0.6 0.041 14.0 0.2 2.5 2 0 0 2 2 2 1 Helix-turn-helix LacI PF00356.21 AHV93492.1 - 0.0015 18.3 1.6 0.0044 16.8 0.6 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family Trp_repressor PF01371.19 AHV93492.1 - 0.0016 18.5 0.2 0.012 15.7 0.1 2.2 2 0 0 2 2 2 1 Trp repressor protein HTH_Crp_2 PF13545.6 AHV93492.1 - 0.002 18.1 0.3 0.013 15.4 0.1 2.3 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain SpoIIID PF12116.8 AHV93492.1 - 0.003 17.6 0.0 1.1 9.4 0.0 2.4 2 0 0 2 2 2 1 Stage III sporulation protein D HTH_Tnp_1 PF01527.20 AHV93492.1 - 0.0042 17.4 0.4 0.11 12.8 0.0 2.7 1 1 1 2 2 2 1 Transposase CENP-B_N PF04218.13 AHV93492.1 - 0.0046 16.6 0.0 3.7 7.2 0.0 2.3 2 0 0 2 2 2 1 CENP-B N-terminal DNA-binding domain Fe_dep_repress PF01325.19 AHV93492.1 - 0.0051 17.0 0.0 0.086 13.1 0.1 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.20 AHV93492.1 - 0.0056 16.5 0.0 2.2 8.2 0.0 2.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 AHV93492.1 - 0.0079 16.0 0.9 0.12 12.1 0.4 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_17 PF12728.7 AHV93492.1 - 0.0082 16.3 0.6 6.1 7.1 0.0 3.3 3 1 0 3 3 3 0 Helix-turn-helix domain HTH_AsnC-type PF13404.6 AHV93492.1 - 0.0095 15.7 2.3 0.13 12.1 0.9 2.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain GntR PF00392.21 AHV93492.1 - 0.013 15.1 0.8 1.2 8.8 0.3 2.6 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_psq PF05225.16 AHV93492.1 - 0.017 14.8 0.5 8.2 6.3 0.0 2.9 3 0 0 3 3 3 0 helix-turn-helix, Psq domain HTH_11 PF08279.12 AHV93492.1 - 0.026 14.5 0.5 0.15 12.0 0.5 2.2 2 0 0 2 2 2 0 HTH domain HTH_10 PF04967.12 AHV93492.1 - 0.027 14.2 0.0 0.17 11.7 0.1 2.2 2 0 0 2 2 2 0 HTH DNA binding domain RepB PF07506.11 AHV93492.1 - 0.03 14.4 0.1 3.7 7.6 0.1 2.3 1 1 1 2 2 2 0 RepB plasmid partitioning protein HTH_Tnp_4 PF13613.6 AHV93492.1 - 0.033 13.9 0.1 0.13 12.0 0.1 2.0 2 0 0 2 2 1 0 Helix-turn-helix of DDE superfamily endonuclease HTH_35 PF13693.6 AHV93492.1 - 0.034 14.2 1.2 0.3 11.2 0.4 2.7 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding HTH_30 PF13556.6 AHV93492.1 - 0.034 14.0 0.0 2 8.3 0.0 2.5 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain DDE_Tnp_IS240 PF13610.6 AHV93492.1 - 0.048 13.9 0.1 0.071 13.3 0.1 1.3 1 0 0 1 1 1 0 DDE domain P22_Cro PF14549.6 AHV93492.1 - 0.062 13.2 1.5 9.6 6.1 0.1 2.5 2 0 0 2 2 2 0 DNA-binding transcriptional regulator Cro HTH_37 PF13744.6 AHV93492.1 - 0.068 13.1 0.1 0.55 10.2 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain UPF0175 PF03683.13 AHV93492.1 - 0.073 12.8 0.3 0.56 10.0 0.1 2.4 2 1 0 2 2 2 0 Uncharacterised protein family (UPF0175) HTH_1 PF00126.27 AHV93492.1 - 0.098 12.6 1.9 7.3 6.6 0.2 2.6 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family Crp PF00325.20 AHV93492.1 - 0.11 12.2 2.8 0.16 11.6 0.4 2.6 3 0 0 3 3 3 0 Bacterial regulatory proteins, crp family DUF746 PF05344.11 AHV93492.1 - 0.11 12.3 0.1 0.98 9.3 0.0 2.3 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) MarR PF01047.22 AHV93492.1 - 0.11 12.4 0.1 0.36 10.8 0.1 1.8 2 0 0 2 2 1 0 MarR family KORA PF16509.5 AHV93492.1 - 0.14 12.5 0.1 14 6.0 0.0 3.0 3 0 0 3 3 3 0 TrfB plasmid transcriptional repressor HTH_36 PF13730.6 AHV93492.1 - 0.17 11.8 0.0 5.2 7.1 0.0 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_Tnp_Tc3_2 PF01498.18 AHV93492.1 - 0.38 11.0 2.7 0.63 10.3 0.1 2.6 3 0 0 3 3 1 0 Transposase MerR PF00376.23 AHV93492.1 - 0.77 9.6 6.8 3.2 7.6 0.0 3.6 4 0 0 4 4 2 0 MerR family regulatory protein ACP_syn_III PF08545.10 AHV93493.1 - 8.9e-35 118.4 2.5 1.1e-34 118.1 1.2 1.9 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ACP_syn_III_C PF08541.10 AHV93493.1 - 4.4e-33 113.3 0.4 2.1e-32 111.2 0.2 2.2 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Thiolase_N PF00108.23 AHV93493.1 - 2.6e-07 30.3 0.6 8.3e-07 28.6 0.0 2.0 2 1 1 3 3 3 1 Thiolase, N-terminal domain ketoacyl-synt PF00109.26 AHV93493.1 - 0.016 14.8 8.1 1.5 8.3 1.2 3.2 1 1 2 3 3 3 0 Beta-ketoacyl synthase, N-terminal domain BPD_transp_2 PF02653.16 AHV93494.1 - 2.8e-65 220.1 87.1 8e-35 120.3 38.0 2.4 3 0 0 3 3 3 2 Branched-chain amino acid transport system / permease component PepSY_TM PF03929.16 AHV93496.1 - 5.5e-14 52.5 1.8 6.4e-14 52.3 1.8 1.1 1 0 0 1 1 1 1 PepSY-associated TM region TMEM190 PF15431.6 AHV93496.1 - 0.032 14.4 0.1 0.038 14.2 0.1 1.2 1 0 0 1 1 1 0 Transmembrane protein 190 DUF5324 PF17258.2 AHV93496.1 - 0.12 12.1 0.1 0.12 12.0 0.1 1.0 1 0 0 1 1 1 0 Family of unknown function (DUF5324) adh_short PF00106.25 AHV93497.1 - 8.4e-40 136.3 0.7 9.9e-40 136.1 0.7 1.0 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 AHV93497.1 - 1.8e-25 89.9 2.3 2.2e-25 89.6 2.3 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 AHV93497.1 - 1.7e-06 28.1 1.6 2.3e-06 27.6 1.6 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 AHV93497.1 - 0.0021 17.5 0.4 0.0033 16.9 0.4 1.5 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.15 AHV93497.1 - 0.038 13.1 0.0 0.047 12.8 0.0 1.1 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein NmrA PF05368.13 AHV93497.1 - 0.057 13.0 0.5 0.094 12.2 0.5 1.5 1 0 0 1 1 1 0 NmrA-like family NAD_binding_10 PF13460.6 AHV93497.1 - 0.072 13.0 4.9 0.16 11.9 4.9 1.8 1 1 0 1 1 1 0 NAD(P)H-binding PK PF00224.21 AHV93498.1 - 7.1e-110 367.2 0.7 9.2e-110 366.8 0.7 1.1 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.16 AHV93498.1 - 2.9e-26 92.0 0.0 6.1e-26 91.0 0.0 1.6 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain Optomotor-blind PF11078.8 AHV93498.1 - 0.01 16.3 1.1 0.022 15.3 1.1 1.6 1 0 0 1 1 1 0 Optomotor-blind protein N-terminal region DNA_pol3_delta PF06144.13 AHV93499.1 - 6.5e-24 84.6 0.0 8.1e-24 84.3 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase III, delta subunit DNA_pol3_delt_C PF14840.6 AHV93499.1 - 0.0095 16.3 0.3 0.019 15.3 0.3 1.5 1 0 0 1 1 1 1 Processivity clamp loader gamma complex DNA pol III C-term PQQ PF01011.21 AHV93500.1 - 5.2e-41 136.7 0.1 2e-09 36.9 0.0 8.5 8 0 0 8 8 8 6 PQQ enzyme repeat PQQ_2 PF13360.6 AHV93500.1 - 7.4e-23 81.4 3.1 4.1e-10 39.6 0.6 3.5 2 1 1 3 3 3 3 PQQ-like domain PQQ_3 PF13570.6 AHV93500.1 - 7.1e-11 42.3 14.6 0.021 15.3 0.1 8.4 7 2 0 7 7 7 3 PQQ-like domain SUKH-4 PF14435.6 AHV93500.1 - 0.078 13.0 0.5 22 5.0 0.0 3.3 2 1 0 2 2 2 0 SUKH-4 immunity protein DUF1476 PF07345.11 AHV93500.1 - 0.15 12.5 0.0 0.25 11.7 0.0 1.3 1 0 0 1 1 1 0 ATPase inhibitor subunit zeta DUF4131 PF13567.6 AHV93500.1 - 1.4 8.6 9.8 4.9 6.8 3.5 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) Aminotran_3 PF00202.21 AHV93501.1 - 1.7e-70 237.8 0.0 2.1e-70 237.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 AHV93501.1 - 0.0012 18.1 0.0 0.0024 17.1 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class I and II PATR PF12951.7 AHV93501.1 - 0.091 12.9 0.3 0.28 11.3 0.0 1.9 2 0 0 2 2 2 0 Passenger-associated-transport-repeat Biotin_lipoyl_2 PF13533.6 AHV93502.1 - 1.5e-14 53.5 6.3 1.6e-14 53.4 2.2 3.0 3 0 0 3 3 3 1 Biotin-lipoyl like HlyD_D23 PF16576.5 AHV93502.1 - 1e-13 51.0 5.8 1.7e-13 50.3 5.8 1.4 1 0 0 1 1 1 1 Barrel-sandwich domain of CusB or HlyD membrane-fusion HlyD_3 PF13437.6 AHV93502.1 - 1.6e-10 41.6 8.1 5.7e-07 30.2 1.0 3.6 3 1 1 4 4 4 2 HlyD family secretion protein VWA_3_C PF18571.1 AHV93502.1 - 0.0068 16.3 0.1 0.025 14.4 0.1 2.0 1 0 0 1 1 1 1 von Willebrand factor type A C-terminal domain Biotin_lipoyl PF00364.22 AHV93502.1 - 0.026 14.4 0.1 0.098 12.5 0.1 2.0 2 0 0 2 2 2 0 Biotin-requiring enzyme PTS_EIIA_1 PF00358.20 AHV93502.1 - 0.091 12.5 0.0 0.31 10.8 0.0 1.9 2 0 0 2 2 2 0 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DUF3649 PF12365.8 AHV93502.1 - 0.64 9.8 5.1 1.2 8.9 5.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3649) IGPS PF00218.21 AHV93503.1 - 2.8e-92 308.5 0.1 3.2e-92 308.3 0.1 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase QRPTase_C PF01729.19 AHV93503.1 - 0.079 12.7 0.0 0.14 11.9 0.0 1.4 1 0 0 1 1 1 0 Quinolinate phosphoribosyl transferase, C-terminal domain rve PF00665.26 AHV93505.1 - 2.4e-32 111.6 0.1 4.3e-32 110.8 0.1 1.4 1 0 0 1 1 1 1 Integrase core domain LZ_Tnp_IS481 PF13011.6 AHV93505.1 - 6.4e-22 77.9 2.6 9.3e-20 70.9 0.4 2.6 1 1 1 2 2 2 1 leucine-zipper of insertion element IS481 rve_3 PF13683.6 AHV93505.1 - 8.8e-19 67.1 2.3 2.1e-18 65.9 2.3 1.7 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.6 AHV93505.1 - 8.2e-17 60.5 4.1 1.9e-07 30.7 0.1 2.7 2 0 0 2 2 2 2 Homeodomain-like domain HTH_28 PF13518.6 AHV93505.1 - 1.4e-15 57.1 4.7 1.6e-10 41.0 0.1 3.2 3 0 0 3 3 3 2 Helix-turn-helix domain HTH_29 PF13551.6 AHV93505.1 - 4.6e-11 42.6 0.6 1.2e-05 25.2 0.0 2.6 2 0 0 2 2 2 2 Winged helix-turn helix HTH_32 PF13565.6 AHV93505.1 - 6.6e-11 42.7 2.9 9.4e-11 42.2 0.7 2.3 2 0 0 2 2 2 1 Homeodomain-like domain HTH_38 PF13936.6 AHV93505.1 - 1.7e-06 27.7 0.5 5.1e-06 26.1 0.5 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 AHV93505.1 - 6.8e-06 25.9 2.8 9.5e-05 22.2 1.2 2.6 2 0 0 2 2 2 1 MarR family HTH_31 PF13560.6 AHV93505.1 - 1.4e-05 25.3 1.7 0.00059 20.1 0.4 3.2 3 0 0 3 3 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 AHV93505.1 - 3.1e-05 23.6 0.1 0.0064 16.1 0.3 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 AHV93505.1 - 4.4e-05 22.9 0.1 0.00056 19.4 0.2 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 YdaS_antitoxin PF15943.5 AHV93505.1 - 0.00022 21.0 0.2 0.24 11.3 0.0 2.8 2 0 0 2 2 2 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_24 PF13412.6 AHV93505.1 - 0.00028 20.4 0.2 0.0021 17.6 0.3 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_3 PF01381.22 AHV93505.1 - 0.00032 20.7 0.7 0.013 15.5 0.3 2.5 2 0 0 2 2 2 1 Helix-turn-helix HTH_Crp_2 PF13545.6 AHV93505.1 - 0.00039 20.3 0.4 0.0027 17.6 0.2 2.3 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 AHV93505.1 - 0.00047 19.5 9.3 0.002 17.5 0.6 3.8 4 0 0 4 4 3 1 Helix-turn-helix domain of transposase family ISL3 Trp_repressor PF01371.19 AHV93505.1 - 0.00065 19.8 0.2 0.006 16.7 0.1 2.2 2 0 0 2 2 2 1 Trp repressor protein HTH_5 PF01022.20 AHV93505.1 - 0.0011 18.8 0.0 0.93 9.4 0.0 2.5 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_psq PF05225.16 AHV93505.1 - 0.0013 18.4 0.7 2.3 8.0 0.4 2.9 3 0 0 3 3 3 1 helix-turn-helix, Psq domain CENP-B_N PF04218.13 AHV93505.1 - 0.0014 18.2 0.1 1.6 8.5 0.1 2.3 2 0 0 2 2 2 2 CENP-B N-terminal DNA-binding domain LacI PF00356.21 AHV93505.1 - 0.0017 18.1 1.8 0.0046 16.7 0.7 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family Fe_dep_repress PF01325.19 AHV93505.1 - 0.0019 18.3 0.0 0.034 14.4 0.1 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_IclR PF09339.10 AHV93505.1 - 0.0026 17.5 1.4 0.035 13.9 0.7 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain SpoIIID PF12116.8 AHV93505.1 - 0.0031 17.6 0.0 1.3 9.2 0.0 2.4 2 0 0 2 2 2 1 Stage III sporulation protein D HTH_11 PF08279.12 AHV93505.1 - 0.0032 17.4 0.5 0.015 15.3 0.5 2.1 2 0 0 2 2 2 1 HTH domain HTH_AsnC-type PF13404.6 AHV93505.1 - 0.0036 17.1 2.7 0.045 13.6 1.1 2.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_Tnp_1 PF01527.20 AHV93505.1 - 0.0038 17.5 0.3 0.17 12.2 0.0 3.0 2 1 1 3 3 3 1 Transposase HTH_17 PF12728.7 AHV93505.1 - 0.0043 17.2 0.7 6.1 7.1 0.0 3.2 3 1 0 3 3 3 0 Helix-turn-helix domain RepB PF07506.11 AHV93505.1 - 0.0045 17.1 0.1 0.55 10.3 0.1 2.3 1 1 1 2 2 2 1 RepB plasmid partitioning protein GntR PF00392.21 AHV93505.1 - 0.0054 16.4 0.8 0.5 10.1 0.3 2.5 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_10 PF04967.12 AHV93505.1 - 0.0071 16.1 0.0 0.049 13.4 0.2 2.3 2 0 0 2 2 2 1 HTH DNA binding domain DDE_Tnp_IS240 PF13610.6 AHV93505.1 - 0.0078 16.4 0.1 0.012 15.9 0.1 1.3 1 0 0 1 1 1 1 DDE domain HTH_35 PF13693.6 AHV93505.1 - 0.0094 16.0 1.4 0.073 13.1 0.6 2.7 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding UPF0175 PF03683.13 AHV93505.1 - 0.012 15.3 0.3 0.1 12.3 0.1 2.4 2 1 1 3 3 2 0 Uncharacterised protein family (UPF0175) HTH_Tnp_4 PF13613.6 AHV93505.1 - 0.017 14.8 0.1 0.067 12.9 0.0 2.0 2 0 0 2 2 1 0 Helix-turn-helix of DDE superfamily endonuclease HTH_37 PF13744.6 AHV93505.1 - 0.017 15.1 0.1 0.13 12.3 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_36 PF13730.6 AHV93505.1 - 0.021 14.8 0.1 0.58 10.2 0.0 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain PG_binding_2 PF08823.11 AHV93505.1 - 0.029 14.7 0.0 0.065 13.6 0.0 1.5 1 0 0 1 1 1 0 Putative peptidoglycan binding domain HTH_30 PF13556.6 AHV93505.1 - 0.033 14.0 0.1 4.4 7.2 0.0 2.6 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain MarR PF01047.22 AHV93505.1 - 0.047 13.6 0.1 0.14 12.1 0.1 1.8 1 0 0 1 1 1 0 MarR family Crp PF00325.20 AHV93505.1 - 0.05 13.3 3.2 0.062 13.0 0.5 2.5 3 0 0 3 3 3 0 Bacterial regulatory proteins, crp family P22_Cro PF14549.6 AHV93505.1 - 0.051 13.4 1.0 12 5.9 0.2 2.5 2 0 0 2 2 2 0 DNA-binding transcriptional regulator Cro HTH_1 PF00126.27 AHV93505.1 - 0.073 13.0 2.4 4.7 7.2 0.5 2.6 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family KORA PF16509.5 AHV93505.1 - 0.075 13.3 0.1 3.6 8.0 0.0 2.7 3 0 0 3 3 2 0 TrfB plasmid transcriptional repressor DUF746 PF05344.11 AHV93505.1 - 0.091 12.6 0.1 1 9.2 0.0 2.3 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) HTH_26 PF13443.6 AHV93505.1 - 0.18 12.3 0.0 3.6 8.1 0.1 2.7 3 0 0 3 3 3 0 Cro/C1-type HTH DNA-binding domain HTH_Tnp_Tc3_2 PF01498.18 AHV93505.1 - 0.27 11.5 2.6 0.47 10.7 0.1 2.6 3 0 0 3 3 1 0 Transposase MerR PF00376.23 AHV93505.1 - 0.71 9.7 6.8 3.2 7.6 0.0 3.6 4 0 0 4 4 2 0 MerR family regulatory protein DNA_pol3_beta_2 PF02767.16 AHV93506.1 - 4.3e-41 139.8 0.5 2.8e-33 114.6 0.0 2.7 3 0 0 3 3 3 2 DNA polymerase III beta subunit, central domain DNA_pol3_beta PF00712.19 AHV93506.1 - 1.7e-31 108.8 0.2 4.4e-26 91.4 0.1 3.2 3 0 0 3 3 3 3 DNA polymerase III beta subunit, N-terminal domain DNA_pol3_beta_3 PF02768.15 AHV93506.1 - 9.5e-31 106.2 0.2 1.4e-29 102.4 0.1 2.4 2 0 0 2 2 2 1 DNA polymerase III beta subunit, C-terminal domain HAD_2 PF13419.6 AHV93507.1 - 4.9e-32 111.4 0.0 5.7e-32 111.2 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 AHV93507.1 - 3.8e-20 73.1 0.1 2.4e-17 63.9 0.1 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 AHV93507.1 - 6.9e-14 51.7 0.5 3.9e-13 49.3 0.1 2.3 3 0 0 3 3 3 1 HAD-hyrolase-like HAD PF12710.7 AHV93507.1 - 2.7e-13 50.7 0.2 3.7e-13 50.3 0.2 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 AHV93507.1 - 1.3e-06 28.4 0.1 1.2 8.9 0.0 3.1 3 0 0 3 3 3 3 haloacid dehalogenase-like hydrolase S6PP PF05116.13 AHV93507.1 - 0.026 14.1 0.4 0.74 9.3 0.0 2.5 3 0 0 3 3 3 0 Sucrose-6F-phosphate phosphohydrolase Hydrolase_6 PF13344.6 AHV93507.1 - 0.061 13.4 0.1 15 5.8 0.0 2.6 2 1 0 2 2 2 0 Haloacid dehalogenase-like hydrolase Acid_PPase PF12689.7 AHV93507.1 - 0.14 11.9 0.1 2.2 8.1 0.0 2.3 2 1 0 2 2 2 0 Acid Phosphatase Ribosomal_L5_C PF00673.21 AHV93508.1 - 1.3e-40 137.5 0.0 1.8e-40 137.0 0.0 1.2 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.19 AHV93508.1 - 1.1e-13 51.3 0.5 2.6e-13 50.1 0.5 1.7 1 0 0 1 1 1 1 Ribosomal protein L5 DNA_pol3_alpha PF07733.12 AHV93509.1 - 8.7e-81 271.3 0.0 1.4e-80 270.6 0.0 1.3 1 0 0 1 1 1 1 Bacterial DNA polymerase III alpha NTPase domain DNA_pol3_finger PF17657.1 AHV93509.1 - 3.6e-55 185.8 0.0 5.5e-55 185.2 0.0 1.3 1 0 0 1 1 1 1 Bacterial DNA polymerase III alpha subunit finger domain HHH_6 PF14579.6 AHV93509.1 - 1.4e-22 79.7 0.0 3.7e-22 78.4 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif PHP PF02811.19 AHV93509.1 - 6.4e-14 52.6 0.0 1.1e-13 51.8 0.0 1.4 1 0 0 1 1 1 1 PHP domain tRNA_anti-codon PF01336.25 AHV93509.1 - 0.0005 20.0 0.4 0.0011 18.9 0.4 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain HHH_3 PF12836.7 AHV93509.1 - 0.066 13.5 0.1 0.18 12.1 0.1 1.7 1 0 0 1 1 1 0 Helix-hairpin-helix motif DUF4539 PF15072.6 AHV93509.1 - 0.13 12.3 0.0 0.25 11.4 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4539) Lactonase PF10282.9 AHV93510.1 - 1.2e-17 64.2 0.0 6.3e-06 25.7 0.0 3.8 1 1 1 3 3 3 3 Lactonase, 7-bladed beta-propeller Cytochrom_D1 PF02239.16 AHV93510.1 - 1.5e-11 43.5 0.1 0.00069 18.2 0.1 4.3 1 1 2 3 3 3 3 Cytochrome D1 heme domain PQQ_2 PF13360.6 AHV93510.1 - 1.1e-05 25.1 0.1 0.022 14.4 0.1 3.0 1 1 2 3 3 3 2 PQQ-like domain SBP56 PF05694.11 AHV93510.1 - 0.002 17.0 0.0 0.0049 15.8 0.0 1.6 2 0 0 2 2 2 1 56kDa selenium binding protein (SBP56) DUF1513 PF07433.11 AHV93510.1 - 0.0026 16.9 0.0 0.59 9.2 0.0 3.3 2 1 1 4 4 4 1 Protein of unknown function (DUF1513) Spt4 PF06093.13 AHV93510.1 - 0.019 15.0 0.0 0.048 13.8 0.0 1.6 2 0 0 2 2 2 0 Spt4/RpoE2 zinc finger OmpA PF00691.20 AHV93511.1 - 4.3e-20 71.9 0.0 6e-20 71.4 0.0 1.2 1 0 0 1 1 1 1 OmpA family DAPG_hydrolase PF18089.1 AHV93511.1 - 0.0053 16.3 0.0 0.0066 16.0 0.0 1.1 1 0 0 1 1 1 1 DAPG hydrolase PhiG domain MFS_1 PF07690.16 AHV93512.1 - 5.2e-32 111.1 66.3 2.9e-17 62.6 33.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.13 AHV93512.1 - 0.00021 19.9 19.5 0.00021 19.9 19.5 2.4 3 0 0 3 3 3 1 Transmembrane secretion effector Sugar_tr PF00083.24 AHV93512.1 - 0.0019 17.1 32.2 0.083 11.7 14.3 2.2 2 0 0 2 2 2 2 Sugar (and other) transporter MFS_1_like PF12832.7 AHV93512.1 - 0.035 13.0 20.8 0.093 11.6 3.2 2.1 1 1 1 2 2 2 0 MFS_1 like family DUF2953 PF11167.8 AHV93512.1 - 0.043 13.9 2.3 8.8 6.5 0.1 3.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2953) MFS_4 PF06779.14 AHV93512.1 - 0.19 11.0 47.4 0.28 10.4 47.4 1.2 1 0 0 1 1 1 0 Uncharacterised MFS-type transporter YbfB Atthog PF18800.1 AHV93512.1 - 9.3 6.1 11.7 2.7 7.9 0.6 3.1 1 1 1 3 3 3 0 Attenuator of Hedgehog Lip_A_acyltrans PF03279.13 AHV93513.1 - 1.1e-61 208.6 0.0 1.3e-61 208.4 0.0 1.0 1 0 0 1 1 1 1 Bacterial lipid A biosynthesis acyltransferase RNase_HII PF01351.18 AHV93514.1 - 2e-34 119.2 0.0 2.3e-34 119.0 0.0 1.0 1 0 0 1 1 1 1 Ribonuclease HII LysR_substrate PF03466.20 AHV93515.1 - 9.2e-50 168.9 5.1 1.3e-49 168.4 5.1 1.2 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 AHV93515.1 - 4.9e-19 68.0 0.1 1e-18 67.0 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family TctC PF03401.14 AHV93516.1 - 2.9e-89 298.8 0.0 3.4e-89 298.5 0.0 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor MarC PF01914.17 AHV93517.1 - 1.9e-29 102.5 2.9 2.2e-29 102.3 2.9 1.0 1 0 0 1 1 1 1 MarC family integral membrane protein Trp_oprn_chp PF09534.10 AHV93517.1 - 0.53 10.1 9.2 0.32 10.8 5.9 1.9 1 1 1 2 2 2 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) Alpha-E PF04168.12 AHV93519.1 - 1.1e-99 334.0 7.3 1.2e-99 333.8 7.3 1.0 1 0 0 1 1 1 1 A predicted alpha-helical domain with a conserved ER motif. DUF3158 PF11358.8 AHV93519.1 - 0.032 14.0 0.1 0.084 12.6 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3158) PTA_PTB PF01515.19 AHV93520.1 - 7e-15 55.1 0.5 7.8e-15 55.0 0.5 1.0 1 0 0 1 1 1 1 Phosphate acetyl/butaryl transferase rve_3 PF13683.6 AHV93521.1 - 8.3e-32 108.8 0.1 4.5e-31 106.4 0.0 2.2 2 0 0 2 2 2 1 Integrase core domain rve PF00665.26 AHV93521.1 - 4.2e-25 88.2 0.0 1.1e-23 83.7 0.0 2.2 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 AHV93521.1 - 1.8e-11 44.0 8.6 3.6e-11 43.0 8.6 1.5 1 0 0 1 1 1 1 HTH-like domain rve_2 PF13333.6 AHV93521.1 - 5.8e-07 29.6 0.0 1.3e-06 28.5 0.0 1.6 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AHV93521.1 - 0.00041 20.6 0.0 0.00091 19.5 0.0 1.6 1 1 1 2 2 2 1 DDE domain Rhomboid_SP PF12595.8 AHV93521.1 - 0.0081 15.6 0.3 2.2 7.6 0.0 2.3 1 1 0 2 2 2 2 Rhomboid serine protease DUF1780 PF08682.10 AHV93521.1 - 0.13 11.9 1.0 1.6 8.3 0.3 2.2 2 0 0 2 2 2 0 Putative endonuclease, protein of unknown function (DUF1780) Oxygenase-NA PF09859.9 AHV93522.1 - 1.7e-27 96.1 0.1 1.2e-26 93.2 0.1 1.8 1 1 1 2 2 2 2 Oxygenase, catalysing oxidative methylation of damaged DNA G_glu_transpept PF01019.21 AHV93523.1 - 1.8e-148 495.5 0.0 2e-148 495.3 0.0 1.0 1 0 0 1 1 1 1 Gamma-glutamyltranspeptidase Asparaginase_2 PF01112.18 AHV93523.1 - 0.11 11.6 0.1 1.2 8.1 0.1 2.2 2 0 0 2 2 2 0 Asparaginase Pirin PF02678.16 AHV93524.1 - 5e-13 49.0 0.0 5.7e-13 48.8 0.0 1.1 1 0 0 1 1 1 1 Pirin IclR PF01614.18 AHV93525.1 - 2e-19 69.7 0.0 6.6e-19 68.0 0.0 1.7 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 AHV93525.1 - 4.1e-12 45.7 0.0 1e-11 44.4 0.0 1.8 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 AHV93525.1 - 0.00033 20.5 0.7 0.001 18.9 0.0 2.1 2 1 0 2 2 2 1 MarR family HTH_29 PF13551.6 AHV93525.1 - 0.015 15.3 0.1 0.045 13.8 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn helix HTH_31 PF13560.6 AHV93525.1 - 0.18 12.1 2.7 36 4.8 0.0 3.4 3 0 0 3 3 3 0 Helix-turn-helix domain TusA PF01206.17 AHV93527.1 - 8.9e-21 73.5 0.0 1e-20 73.3 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.9 AHV93527.1 - 0.0028 17.5 0.0 0.004 17.0 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) adh_short PF00106.25 AHV93528.1 - 9.5e-63 211.2 0.3 1.1e-62 211.0 0.3 1.0 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 AHV93528.1 - 8.5e-60 202.2 0.1 1e-59 201.9 0.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 AHV93528.1 - 7e-21 75.0 0.1 9.1e-21 74.6 0.1 1.1 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.6 AHV93528.1 - 1.9e-06 27.9 0.1 2.6e-06 27.5 0.1 1.2 1 0 0 1 1 1 1 NAD(P)H-binding Epimerase PF01370.21 AHV93528.1 - 8.5e-05 22.1 0.0 0.00019 21.0 0.0 1.7 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 AHV93528.1 - 0.15 11.1 0.3 0.25 10.3 0.3 1.4 1 1 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family DUF4177 PF13783.6 AHV93528.1 - 0.17 12.2 0.1 32 4.9 0.0 2.8 2 1 1 3 3 3 0 Domain of unknown function (DUF4177) AlaDh_PNT_C PF01262.21 AHV93529.1 - 2.6e-72 242.6 3.1 2.6e-72 242.6 3.1 1.5 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain AlaDh_PNT_N PF05222.15 AHV93529.1 - 2e-31 109.1 0.1 5.4e-31 107.7 0.1 1.7 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, N-terminal domain 2-Hacid_dh_C PF02826.19 AHV93529.1 - 0.00044 19.7 0.1 0.69 9.3 0.0 2.7 3 0 0 3 3 3 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Pyr_redox_2 PF07992.14 AHV93529.1 - 0.0083 15.4 0.1 0.016 14.5 0.1 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase SIP PF04954.13 AHV93530.1 - 0.0019 18.7 2.2 0.98 9.9 0.2 2.8 2 1 1 3 3 3 2 Siderophore-interacting protein Glyco_trans_1_4 PF13692.6 AHV93530.1 - 0.0035 17.8 0.1 0.0043 17.5 0.1 1.1 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 AHV93530.1 - 0.18 11.3 0.0 0.22 11.0 0.0 1.1 1 0 0 1 1 1 0 Glycosyl transferases group 1 Ribosomal_L33 PF00471.20 AHV93531.1 - 2.9e-17 62.8 1.5 3.3e-17 62.7 1.5 1.0 1 0 0 1 1 1 1 Ribosomal protein L33 ABC-3 PF00950.17 AHV93533.1 - 2e-78 263.5 30.3 2.2e-78 263.3 30.3 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.18 AHV93533.1 - 1.8e-09 37.0 26.0 1.8e-09 37.0 26.0 1.8 1 1 1 2 2 2 1 FecCD transport family DUF3021 PF11457.8 AHV93533.1 - 0.073 13.4 1.1 0.073 13.4 1.1 3.9 1 1 2 3 3 3 0 Protein of unknown function (DUF3021) MFS_1 PF07690.16 AHV93534.1 - 9.8e-44 149.7 39.9 1.5e-43 149.1 39.9 1.3 1 0 0 1 1 1 1 Major Facilitator Superfamily MFS_4 PF06779.14 AHV93534.1 - 7.2e-05 22.2 26.9 0.025 13.9 26.9 2.0 1 1 0 1 1 1 1 Uncharacterised MFS-type transporter YbfB MFS_1_like PF12832.7 AHV93534.1 - 0.00045 19.2 17.8 0.00094 18.1 9.5 2.7 2 1 1 3 3 3 2 MFS_1 like family Mqo PF06039.15 AHV93535.1 - 0.16 10.5 0.0 0.16 10.5 0.0 1.0 1 0 0 1 1 1 0 Malate:quinone oxidoreductase (Mqo) YqjK PF13997.6 AHV93535.1 - 0.27 11.5 6.2 7.4 6.9 6.2 2.2 1 1 0 1 1 1 0 YqjK-like protein Response_reg PF00072.24 AHV93536.1 - 1.7e-27 95.8 0.0 2.7e-27 95.2 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 AHV93536.1 - 1.1e-21 76.7 0.0 2.2e-21 75.7 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal AHJR-like PF18743.1 AHV93536.1 - 0.0002 20.9 0.0 0.00035 20.1 0.0 1.3 1 0 0 1 1 1 1 REase_AHJR-like OKR_DC_1_N PF03709.15 AHV93536.1 - 0.13 12.6 0.0 0.26 11.6 0.0 1.4 1 1 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain Acetyltransf_10 PF13673.7 AHV93537.1 - 2.1e-09 37.4 0.0 2.3e-09 37.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 AHV93537.1 - 4.9e-09 36.5 0.0 7.2e-09 36.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 AHV93537.1 - 1e-07 32.2 0.0 1.2e-07 32.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_CG PF14542.6 AHV93537.1 - 0.0015 18.7 0.0 0.0025 17.9 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase FR47 PF08445.10 AHV93537.1 - 0.017 15.1 0.0 0.032 14.2 0.0 1.4 1 0 0 1 1 1 0 FR47-like protein Acetyltransf_9 PF13527.7 AHV93537.1 - 0.1 12.7 0.0 0.14 12.2 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain CT_A_B PF02626.15 AHV93538.1 - 6e-92 308.0 0.0 7e-92 307.8 0.0 1.0 1 0 0 1 1 1 1 Carboxyltransferase domain, subdomain A and B ATP-synt_ab PF00006.25 AHV93539.1 - 3.8e-63 213.0 0.0 5.3e-63 212.5 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 AHV93539.1 - 6.3e-19 68.3 0.1 1.3e-18 67.2 0.1 1.6 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain T3SS_ATPase_C PF18269.1 AHV93539.1 - 0.00021 21.1 1.3 0.0011 18.8 0.7 2.5 2 1 0 2 2 2 1 T3SS EscN ATPase C-terminal domain RNA_helicase PF00910.22 AHV93539.1 - 0.099 13.0 0.0 0.2 12.1 0.0 1.5 1 0 0 1 1 1 0 RNA helicase TrwB_AAD_bind PF10412.9 AHV93539.1 - 0.11 11.3 0.1 0.2 10.5 0.1 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain Acyl-CoA_dh_1 PF00441.24 AHV93540.1 - 3.3e-34 118.3 1.1 2.1e-20 73.5 0.9 2.3 2 0 0 2 2 2 2 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 AHV93540.1 - 2.3e-25 89.5 0.2 2.2e-17 63.8 0.0 2.9 2 0 0 2 2 2 2 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 AHV93540.1 - 9.2e-24 83.5 0.0 2.7e-20 72.4 0.0 2.4 2 0 0 2 2 2 2 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 AHV93540.1 - 1.8e-07 31.5 0.2 4.2e-07 30.3 0.2 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Aconitase PF00330.20 AHV93541.1 - 9.8e-11 41.3 0.1 1.4e-10 40.8 0.1 1.4 1 1 0 1 1 1 1 Aconitase family (aconitate hydratase) DUF4726 PF15855.5 AHV93541.1 - 0.095 12.9 0.0 0.91 9.8 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4726) SBP_bac_3 PF00497.20 AHV93542.1 - 6.9e-11 42.0 0.0 1.5e-10 40.9 0.0 1.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 DUF493 PF04359.14 AHV93543.1 - 2e-30 105.2 0.0 2.2e-30 105.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF493) META PF03724.16 AHV93544.1 - 1.1e-24 86.5 0.1 2.9e-24 85.1 0.0 1.6 2 0 0 2 2 2 1 META domain Response_reg PF00072.24 AHV93545.1 - 1.7e-18 66.8 0.0 2.6e-18 66.2 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain GerE PF00196.19 AHV93545.1 - 8.8e-15 54.0 0.5 1.3e-14 53.4 0.5 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_38 PF13936.6 AHV93545.1 - 0.0013 18.5 0.5 0.0025 17.6 0.5 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 AHV93545.1 - 0.0016 18.0 0.5 0.0031 17.2 0.5 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 AHV93545.1 - 0.0071 15.8 1.2 0.013 15.0 1.2 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_29 PF13551.6 AHV93545.1 - 0.01 15.9 0.1 0.027 14.5 0.1 1.7 1 0 0 1 1 1 0 Winged helix-turn helix HTH_23 PF13384.6 AHV93545.1 - 0.047 13.5 0.2 0.11 12.3 0.2 1.5 1 0 0 1 1 1 0 Homeodomain-like domain MarR_2 PF12802.7 AHV93545.1 - 0.11 12.4 0.4 0.31 11.0 0.4 1.8 1 0 0 1 1 1 0 MarR family LpxK PF02606.14 AHV93546.1 - 1.1e-88 297.5 0.0 1.2e-88 297.4 0.0 1.0 1 0 0 1 1 1 1 Tetraacyldisaccharide-1-P 4'-kinase AMP-binding_C_2 PF14535.6 AHV93547.1 - 3.4e-23 81.8 0.0 4.8e-23 81.3 0.0 1.2 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 AHV93547.1 - 3.2e-05 22.7 1.2 9.7e-05 21.1 1.2 1.8 1 1 0 1 1 1 1 AMP-binding enzyme rve_3 PF13683.6 AHV93548.1 - 1.8e-31 107.7 0.0 4.1e-31 106.6 0.0 1.6 2 0 0 2 2 2 1 Integrase core domain rve PF00665.26 AHV93548.1 - 5.6e-24 84.6 0.0 9.5e-24 83.9 0.0 1.3 1 0 0 1 1 1 1 Integrase core domain rve_2 PF13333.6 AHV93548.1 - 7e-07 29.3 0.0 1.2e-06 28.6 0.0 1.3 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AHV93548.1 - 0.00052 20.3 0.0 0.00079 19.7 0.0 1.4 1 0 0 1 1 1 1 DDE domain LysR_substrate PF03466.20 AHV93549.1 - 1.3e-32 112.9 12.0 1.3e-32 112.9 12.0 1.8 2 0 0 2 2 2 1 LysR substrate binding domain HTH_1 PF00126.27 AHV93549.1 - 8e-18 64.1 2.1 2.4e-17 62.6 2.1 1.9 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family T2SSM_b PF10741.9 AHV93549.1 - 0.01 15.7 4.9 0.035 13.9 2.2 2.3 1 1 1 2 2 2 1 Type II secretion system (T2SS), protein M subtype b HTH_28 PF13518.6 AHV93549.1 - 0.014 15.5 0.4 0.043 14.0 0.4 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain PSK_trans_fac PF07704.11 AHV93549.1 - 0.25 12.1 4.4 0.38 11.6 3.2 1.9 1 1 0 1 1 1 0 Rv0623-like transcription factor BPL_LplA_LipB PF03099.19 AHV93550.1 - 4.3e-09 36.4 0.0 6.7e-09 35.7 0.0 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family IclR PF01614.18 AHV93551.1 - 9.6e-34 116.0 0.0 1.4e-33 115.5 0.0 1.2 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 AHV93551.1 - 1.2e-12 47.4 0.4 2.7e-12 46.3 0.4 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 AHV93551.1 - 0.0043 16.9 0.3 0.011 15.6 0.3 1.7 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 AHV93551.1 - 0.019 14.9 0.0 0.036 14.0 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF4148 PF13663.6 AHV93551.1 - 0.084 13.1 2.2 1.9 8.7 0.2 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4148) ResB PF05140.14 AHV93552.1 - 5.9e-45 153.9 0.3 7.1e-45 153.7 0.3 1.0 1 0 0 1 1 1 1 ResB-like family WBP-1 PF11669.8 AHV93552.1 - 0.029 15.0 5.6 0.22 12.2 0.0 2.6 1 1 0 2 2 2 0 WW domain-binding protein 1 DUF4136 PF13590.6 AHV93553.1 - 4.6e-27 95.2 0.1 5.5e-27 95.0 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4136) rve PF00665.26 AHV93554.1 - 9.1e-36 122.7 0.2 2.4e-35 121.3 0.1 1.7 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 AHV93554.1 - 5.9e-14 51.9 1.5 4.2e-13 49.2 1.0 2.4 2 0 0 2 2 2 1 HTH-like domain rve_2 PF13333.6 AHV93554.1 - 2.7e-12 46.7 0.9 4.2e-12 46.0 0.9 1.3 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.6 AHV93554.1 - 2.1e-11 43.4 0.2 4e-11 42.5 0.2 1.5 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AHV93554.1 - 1.2e-07 32.1 0.2 1.6e-07 31.6 0.2 1.2 1 0 0 1 1 1 1 DDE domain HTH_Tnp_1 PF01527.20 AHV93554.1 - 0.0021 18.3 0.4 0.0072 16.6 0.0 2.0 2 0 0 2 2 2 1 Transposase Ldh_2 PF02615.14 AHV93555.1 - 5.2e-98 328.3 0.0 5.8e-98 328.1 0.0 1.0 1 0 0 1 1 1 1 Malate/L-lactate dehydrogenase Peptidase_S9 PF00326.21 AHV93556.1 - 5.3e-46 156.8 0.1 9.2e-46 156.0 0.1 1.4 1 0 0 1 1 1 1 Prolyl oligopeptidase family DLH PF01738.18 AHV93556.1 - 4.6e-10 39.4 0.0 8.9e-10 38.5 0.0 1.5 1 1 0 1 1 1 1 Dienelactone hydrolase family Peptidase_S15 PF02129.18 AHV93556.1 - 2.5e-08 33.9 0.3 3e-05 23.7 0.3 2.5 1 1 0 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) AXE1 PF05448.12 AHV93556.1 - 1.8e-05 23.6 0.0 0.0026 16.5 0.0 2.2 1 1 0 1 1 1 1 Acetyl xylan esterase (AXE1) Abhydrolase_3 PF07859.13 AHV93556.1 - 3.2e-05 23.9 0.4 0.00048 20.1 0.4 2.2 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_1 PF00561.20 AHV93556.1 - 0.00057 19.6 2.5 0.35 10.5 1.0 2.7 3 0 0 3 3 3 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 AHV93556.1 - 0.00083 18.7 0.3 0.019 14.2 0.0 2.3 1 1 0 2 2 2 1 Serine aminopeptidase, S33 BAAT_C PF08840.11 AHV93556.1 - 0.0059 16.5 0.0 0.016 15.1 0.0 1.7 1 1 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal LIP PF03583.14 AHV93556.1 - 0.014 14.8 0.1 0.29 10.4 0.1 2.2 2 0 0 2 2 2 0 Secretory lipase Esterase PF00756.20 AHV93556.1 - 0.023 14.3 0.0 0.043 13.4 0.0 1.4 1 0 0 1 1 1 0 Putative esterase MscL PF01741.18 AHV93557.1 - 1.4e-41 141.6 0.7 1.6e-41 141.4 0.7 1.0 1 0 0 1 1 1 1 Large-conductance mechanosensitive channel, MscL DUF1422 PF07226.11 AHV93557.1 - 0.92 9.5 5.4 15 5.7 5.4 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF1422) DUF45 PF01863.17 AHV93558.1 - 7.5e-57 192.7 0.0 9.9e-57 192.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF45 Peptidase_M56 PF05569.11 AHV93558.1 - 0.1 11.7 0.3 0.15 11.3 0.3 1.1 1 0 0 1 1 1 0 BlaR1 peptidase M56 WLM PF08325.10 AHV93558.1 - 0.11 12.6 0.2 0.2 11.7 0.2 1.3 1 0 0 1 1 1 0 WLM domain Lactamase_B PF00753.27 AHV93559.1 - 1.4e-26 93.7 0.9 5.5e-26 91.8 0.9 1.8 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 AHV93559.1 - 0.0016 18.0 0.0 0.0031 17.1 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Transgly PF00912.22 AHV93560.1 - 6.1e-63 211.5 0.0 9.6e-63 210.8 0.0 1.3 1 0 0 1 1 1 1 Transglycosylase Transpeptidase PF00905.22 AHV93560.1 - 2.6e-35 122.1 0.0 1.1e-34 120.0 0.0 1.9 1 1 0 1 1 1 1 Penicillin binding protein transpeptidase domain PCB_OB PF17092.5 AHV93560.1 - 3.6e-15 56.7 0.2 8.9e-15 55.4 0.0 1.8 2 0 0 2 2 2 1 Penicillin-binding protein OB-like domain LPAM_1 PF08139.12 AHV93561.1 - 0.01 16.3 1.8 0.021 15.3 1.8 1.6 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site Gly-zipper_YMGG PF13441.6 AHV93561.1 - 0.97 9.2 18.7 1.6 8.5 18.7 1.4 1 0 0 1 1 1 0 YMGG-like Gly-zipper YCII PF03795.14 AHV93562.1 - 6.7e-18 64.9 0.0 7.6e-18 64.7 0.0 1.0 1 0 0 1 1 1 1 YCII-related domain DUF1296 PF06972.11 AHV93562.1 - 0.16 12.2 0.0 0.23 11.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1296) DDE_Tnp_ISL3 PF01610.17 AHV93563.1 - 7.9e-65 218.9 1.2 1.1e-64 218.4 0.3 1.6 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV93563.1 - 1.4e-11 43.6 0.1 3.6e-11 42.3 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV93563.1 - 5.3e-09 36.6 11.2 1.1e-08 35.6 11.2 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV93563.1 - 0.0056 16.7 0.2 0.016 15.3 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain SLT_L PF14718.6 AHV93563.1 - 0.016 15.3 1.5 0.016 15.3 1.5 1.8 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain NOB1_Zn_bind PF08772.11 AHV93563.1 - 0.017 15.2 0.2 1.2 9.3 0.0 2.5 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-IS66 PF13005.7 AHV93563.1 - 8.2 6.9 9.6 3.6 8.1 6.6 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 EamA PF00892.20 AHV93564.1 - 2.5e-32 111.9 43.4 1.4e-17 64.1 18.2 2.0 2 0 0 2 2 2 2 EamA-like transporter family FA_synthesis PF02504.15 AHV93565.1 - 3.9e-107 358.1 0.1 4.5e-107 357.8 0.1 1.0 1 0 0 1 1 1 1 Fatty acid synthesis protein PTA_PTB PF01515.19 AHV93565.1 - 0.00053 19.4 0.1 0.00089 18.7 0.1 1.3 1 0 0 1 1 1 1 Phosphate acetyl/butaryl transferase UPF0225 PF17775.1 AHV93566.1 - 2.3e-28 98.9 0.0 2.9e-28 98.6 0.0 1.1 1 0 0 1 1 1 1 UPF0225 domain SEC-C PF02810.15 AHV93566.1 - 0.0027 17.6 6.3 0.0039 17.1 6.3 1.2 1 0 0 1 1 1 1 SEC-C motif MmgE_PrpD PF03972.14 AHV93567.1 - 1.1e-93 314.2 8.8 1.3e-93 313.9 8.8 1.0 1 0 0 1 1 1 1 MmgE/PrpD family DUF2292 PF10055.9 AHV93567.1 - 0.091 12.4 0.1 0.18 11.5 0.1 1.5 1 0 0 1 1 1 0 Uncharacterized small protein (DUF2292) GGDEF PF00990.21 AHV93568.1 - 1.8e-39 135.1 0.0 3e-39 134.3 0.0 1.4 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain PAS_3 PF08447.12 AHV93568.1 - 3e-23 81.9 0.4 7.8e-23 80.6 0.4 1.8 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.10 AHV93568.1 - 0.0045 17.2 5.3 0.014 15.7 0.6 3.2 3 1 0 3 3 3 1 PAS fold PAS PF00989.25 AHV93568.1 - 0.11 12.5 0.0 0.25 11.4 0.0 1.6 1 0 0 1 1 1 0 PAS fold HTH_5 PF01022.20 AHV93569.1 - 2.4e-13 49.7 0.1 4.4e-13 48.9 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 AHV93569.1 - 3.9e-07 30.0 1.1 6.2e-07 29.4 1.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HxlR PF01638.17 AHV93569.1 - 5.1e-05 23.0 0.1 7.1e-05 22.6 0.1 1.2 1 0 0 1 1 1 1 HxlR-like helix-turn-helix MarR_2 PF12802.7 AHV93569.1 - 5.4e-05 23.0 0.5 0.0001 22.1 0.5 1.5 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 AHV93569.1 - 0.014 15.3 0.1 0.023 14.6 0.1 1.6 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain TrmB PF01978.19 AHV93569.1 - 0.018 14.9 0.0 0.026 14.4 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Hydrophob_seed PF14547.6 AHV93569.1 - 0.046 13.9 0.2 0.068 13.4 0.2 1.3 1 0 0 1 1 1 0 Hydrophobic seed protein DpnI_C PF17726.1 AHV93569.1 - 0.047 13.8 0.0 0.083 13.0 0.0 1.3 1 0 0 1 1 1 0 Dam-replacing HTH domain Rrf2 PF02082.20 AHV93569.1 - 0.081 13.3 0.0 0.16 12.3 0.0 1.5 1 1 0 1 1 1 0 Transcriptional regulator CBS PF00571.28 AHV93570.1 - 8.5e-17 61.4 1.4 2.8e-08 34.1 0.1 2.2 2 0 0 2 2 2 2 CBS domain TctC PF03401.14 AHV93571.1 - 1.8e-84 283.1 0.2 2.1e-84 282.9 0.2 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor MetW PF07021.12 AHV93572.1 - 7.5e-76 254.0 0.0 8.4e-76 253.9 0.0 1.0 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_11 PF08241.12 AHV93572.1 - 1.5e-12 48.0 0.2 2.4e-12 47.3 0.2 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 AHV93572.1 - 3.8e-11 43.1 0.0 7.8e-11 42.1 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 AHV93572.1 - 8.7e-11 42.4 0.3 1.3e-10 41.8 0.3 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 AHV93572.1 - 1.4e-08 34.6 0.0 2.3e-08 34.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 AHV93572.1 - 1e-06 29.4 0.1 1.7e-06 28.7 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 AHV93572.1 - 0.00045 20.2 0.0 0.0012 18.8 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 AHV93572.1 - 0.0027 17.3 0.0 0.0038 16.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Ubie_methyltran PF01209.18 AHV93572.1 - 0.013 14.8 0.1 0.036 13.4 0.1 1.6 1 1 0 1 1 1 0 ubiE/COQ5 methyltransferase family CMAS PF02353.20 AHV93572.1 - 0.019 14.3 0.1 0.044 13.1 0.1 1.7 1 1 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_32 PF13679.6 AHV93572.1 - 0.028 14.4 0.0 0.037 14.0 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_8 PF05148.15 AHV93572.1 - 0.055 13.3 0.1 0.095 12.5 0.1 1.4 1 1 0 1 1 1 0 Hypothetical methyltransferase Methyltransf_29 PF03141.16 AHV93572.1 - 0.082 11.4 0.0 0.11 11.1 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase PQQ_2 PF13360.6 AHV93573.1 - 7.4e-56 189.4 3.8 2.2e-53 181.3 1.5 2.8 1 1 2 3 3 3 3 PQQ-like domain PQQ PF01011.21 AHV93573.1 - 4.4e-27 92.7 0.9 0.00015 21.5 0.0 7.4 7 0 0 7 7 7 5 PQQ enzyme repeat PQQ_3 PF13570.6 AHV93573.1 - 3.6e-23 81.4 19.3 0.00022 21.6 0.3 7.8 7 1 0 7 7 7 6 PQQ-like domain UbiD PF01977.16 AHV93574.1 - 1.1e-162 541.6 0.0 1.3e-162 541.4 0.0 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase TEA PF01285.18 AHV93574.1 - 0.028 14.5 0.0 0.059 13.5 0.0 1.4 1 0 0 1 1 1 0 TEA/ATTS domain TctC PF03401.14 AHV93575.1 - 3.6e-51 173.8 0.2 4.5e-51 173.5 0.2 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor Glycos_transf_1 PF00534.20 AHV93576.1 - 3.5e-23 82.0 0.0 5.7e-23 81.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 AHV93576.1 - 1.2e-18 67.8 0.1 3.2e-18 66.4 0.1 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 AHV93576.1 - 1.3e-07 31.8 1.1 3.3e-07 30.5 0.1 2.1 3 0 0 3 3 3 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 AHV93576.1 - 0.00051 20.4 0.0 0.0013 19.0 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 TPR_6 PF13174.6 AHV93576.1 - 0.011 16.3 0.2 7.2 7.5 0.0 4.2 4 0 0 4 4 4 0 Tetratricopeptide repeat Glyco_trans_4_2 PF13477.6 AHV93576.1 - 0.03 14.4 0.0 0.051 13.6 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase 4-like Terminase_6C PF17289.2 AHV93576.1 - 0.17 11.9 0.0 14 5.7 0.0 2.6 2 0 0 2 2 2 0 Terminase RNaseH-like domain TPR_16 PF13432.6 AHV93576.1 - 0.47 11.2 5.0 4.1 8.1 0.1 3.4 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_14 PF13428.6 AHV93576.1 - 9.5 7.3 8.3 7.7 7.6 0.1 4.2 3 1 1 4 4 4 0 Tetratricopeptide repeat Carboxyl_trans PF01039.22 AHV93577.1 - 1.2e-153 512.4 0.1 1.5e-153 512.0 0.1 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain MdcE PF06833.11 AHV93577.1 - 8.4e-05 22.2 0.3 0.12 11.9 0.1 2.3 2 0 0 2 2 2 2 Malonate decarboxylase gamma subunit (MdcE) HTH_18 PF12833.7 AHV93578.1 - 3.6e-20 72.0 0.7 6.4e-20 71.2 0.7 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain DJ-1_PfpI PF01965.24 AHV93578.1 - 3.8e-09 36.6 0.0 5.2e-09 36.1 0.0 1.3 1 0 0 1 1 1 1 DJ-1/PfpI family HTH_AraC PF00165.23 AHV93578.1 - 1.6e-08 34.5 0.0 0.00011 22.2 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family DEAD PF00270.29 AHV93579.1 - 1.1e-47 162.0 0.0 1.9e-47 161.3 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 AHV93579.1 - 2.3e-23 82.6 0.1 8.8e-23 80.8 0.3 1.9 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DbpA PF03880.15 AHV93579.1 - 3.5e-23 81.4 0.1 7.4e-23 80.3 0.1 1.6 1 0 0 1 1 1 1 DbpA RNA binding domain ResIII PF04851.15 AHV93579.1 - 0.00021 21.3 0.0 0.00037 20.5 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit CMS1 PF14617.6 AHV93579.1 - 0.0068 15.8 0.0 0.035 13.5 0.0 2.0 2 0 0 2 2 2 1 U3-containing 90S pre-ribosomal complex subunit EcoRI PF02963.16 AHV93579.1 - 0.029 13.4 0.0 0.045 12.8 0.0 1.2 1 0 0 1 1 1 0 Restriction endonuclease EcoRI DUF5615 PF18480.1 AHV93579.1 - 0.1 12.4 0.1 0.26 11.0 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF5615) DHQ_synthase PF01761.20 AHV93580.1 - 3e-108 360.9 0.0 3.6e-108 360.7 0.0 1.1 1 0 0 1 1 1 1 3-dehydroquinate synthase Fe-ADH_2 PF13685.6 AHV93580.1 - 4.3e-15 56.1 2.0 1.4e-13 51.2 2.0 2.1 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 AHV93580.1 - 2.3e-06 26.7 2.5 0.00015 20.7 0.7 2.1 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase 5TM-5TMR_LYT PF07694.12 AHV93580.1 - 0.065 12.7 0.6 0.12 11.8 0.6 1.4 1 0 0 1 1 1 0 5TMR of 5TMR-LYT TonB_C PF03544.14 AHV93581.1 - 2.1e-09 37.7 0.0 7.7e-09 35.9 0.0 1.9 2 0 0 2 2 2 1 Gram-negative bacterial TonB protein C-terminal TonB_2 PF13103.6 AHV93581.1 - 8.9e-06 25.9 0.0 2e-05 24.7 0.0 1.6 1 0 0 1 1 1 1 TonB C terminal Ntox1 PF15500.6 AHV93581.1 - 0.012 15.9 0.3 0.028 14.8 0.3 1.5 1 0 0 1 1 1 0 Putative RNase-like toxin, toxin_1 LHC PF00556.20 AHV93581.1 - 0.36 11.1 2.1 1.3 9.3 2.1 1.9 1 0 0 1 1 1 0 Antenna complex alpha/beta subunit adh_short PF00106.25 AHV93582.1 - 2.8e-50 170.5 0.7 3.4e-50 170.2 0.7 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 AHV93582.1 - 4.9e-49 167.0 4.1 3.9e-47 160.8 4.1 2.0 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 AHV93582.1 - 8.7e-12 45.3 2.3 1.2e-11 44.8 2.3 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 AHV93582.1 - 5.8e-09 35.8 0.2 1.6e-08 34.3 0.2 1.6 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 AHV93582.1 - 0.004 16.6 0.3 0.21 10.9 0.1 2.0 2 0 0 2 2 2 1 GDP-mannose 4,6 dehydratase DUF1776 PF08643.10 AHV93582.1 - 0.014 14.7 0.0 0.021 14.2 0.0 1.2 1 0 0 1 1 1 0 Fungal family of unknown function (DUF1776) CoA_binding_2 PF13380.6 AHV93582.1 - 0.043 14.3 0.5 3.1 8.3 0.1 2.8 2 1 1 3 3 3 0 CoA binding domain AP_endonuc_2 PF01261.24 AHV93582.1 - 0.047 13.1 0.0 0.26 10.7 0.0 2.0 2 0 0 2 2 2 0 Xylose isomerase-like TIM barrel F420_oxidored PF03807.17 AHV93582.1 - 0.081 13.5 0.3 0.23 12.1 0.0 1.9 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent NAD_binding_3 PF03447.16 AHV93582.1 - 0.12 13.1 0.4 15 6.3 0.0 2.3 2 0 0 2 2 2 0 Homoserine dehydrogenase, NAD binding domain NmrA PF05368.13 AHV93582.1 - 0.16 11.5 2.1 0.32 10.5 0.9 1.8 2 0 0 2 2 2 0 NmrA-like family LDcluster4 PF18306.1 AHV93582.1 - 0.57 9.8 3.8 1.9 8.1 0.5 2.9 3 1 1 4 4 4 0 SLOG cluster4 family DsbC PF11412.8 AHV93583.1 - 1.4e-31 109.0 0.0 2.2e-31 108.4 0.0 1.3 1 0 0 1 1 1 1 Disulphide bond corrector protein DsbC DsbD PF02683.15 AHV93583.1 - 7.4e-18 65.2 10.9 7.4e-18 65.2 10.9 1.5 1 1 0 2 2 2 1 Cytochrome C biogenesis protein transmembrane region Thioredoxin_7 PF13899.6 AHV93583.1 - 2.9e-11 43.4 0.0 5.8e-11 42.4 0.0 1.5 1 0 0 1 1 1 1 Thioredoxin-like DsbD_2 PF13386.6 AHV93583.1 - 1.3e-09 38.3 23.3 1.3e-09 38.3 23.3 2.2 1 1 0 2 2 2 1 Cytochrome C biogenesis protein transmembrane region Thioredoxin PF00085.20 AHV93583.1 - 8.3e-07 29.0 0.0 1.4e-06 28.2 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 AHV93583.1 - 1.3e-06 28.8 0.0 3e-06 27.6 0.0 1.6 1 0 0 1 1 1 1 Thioredoxin-like domain TctC PF03401.14 AHV93584.1 - 7.4e-79 264.6 0.0 9.3e-79 264.3 0.0 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor Endostatin PF06482.11 AHV93584.1 - 0.15 11.5 0.0 0.21 11.0 0.0 1.1 1 0 0 1 1 1 0 Collagenase NC10 and Endostatin GTP_EFTU PF00009.27 AHV93585.1 - 5.2e-58 195.8 0.0 7.3e-58 195.3 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.17 AHV93585.1 - 3.7e-33 114.2 0.0 7.5e-33 113.2 0.0 1.6 1 0 0 1 1 1 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.25 AHV93585.1 - 2e-17 63.3 5.8 4.7e-17 62.1 5.8 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 AHV93585.1 - 1.7e-05 24.9 0.0 3e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase cobW PF02492.19 AHV93585.1 - 0.04 13.5 0.5 0.067 12.8 0.0 1.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain RsgA_GTPase PF03193.16 AHV93585.1 - 0.11 12.3 0.1 0.29 11.0 0.0 1.7 2 0 0 2 2 2 0 RsgA GTPase Lsm_C PF14894.6 AHV93585.1 - 0.15 11.9 2.8 0.31 10.8 2.8 1.5 1 0 0 1 1 1 0 Lsm C-terminal HTH_18 PF12833.7 AHV93586.1 - 2.3e-16 59.8 6.8 2.6e-16 59.6 5.6 1.7 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_AraC PF00165.23 AHV93586.1 - 9.5e-12 44.7 0.0 2.9e-06 27.2 0.0 2.3 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_23 PF13384.6 AHV93586.1 - 0.012 15.4 6.1 0.022 14.5 0.3 2.8 2 0 0 2 2 2 0 Homeodomain-like domain HTH_20 PF12840.7 AHV93586.1 - 0.019 15.0 1.7 0.028 14.5 0.5 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 AHV93586.1 - 0.041 13.6 1.1 0.12 12.0 0.0 2.3 2 0 0 2 2 2 0 Sigma-70, region 4 PHO4 PF01384.20 AHV93587.1 - 1.6e-84 283.9 11.0 2.1e-84 283.4 11.0 1.2 1 0 0 1 1 1 1 Phosphate transporter family Radical_SAM PF04055.21 AHV93589.1 - 4.7e-11 43.3 0.0 6.1e-11 43.0 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 AHV93589.1 - 0.00016 21.8 0.0 0.00025 21.1 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain tRNA-synt_1_2 PF13603.6 AHV93590.1 - 2.2e-64 216.4 0.0 3.2e-64 215.9 0.0 1.2 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1 PF00133.22 AHV93590.1 - 1e-59 202.3 0.0 1.3e-40 139.3 0.1 5.2 2 1 1 3 3 3 3 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.11 AHV93590.1 - 3.2e-24 85.4 0.0 1.3e-16 60.4 0.0 4.3 3 1 1 4 4 4 3 tRNA synthetases class I (M) Anticodon_1 PF08264.13 AHV93590.1 - 1e-11 45.0 0.0 2.1e-11 44.0 0.0 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.19 AHV93590.1 - 0.0034 16.8 0.0 0.01 15.2 0.0 1.8 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 AHV93590.1 - 0.026 13.4 0.0 0.6 9.0 0.0 2.3 2 0 0 2 2 2 0 tRNA synthetases class I (K) zf-ribbon_3 PF13248.6 AHV93590.1 - 0.24 10.9 4.5 3.7 7.1 0.4 2.4 2 0 0 2 2 2 0 zinc-ribbon domain DNA_ligase_ZBD PF03119.16 AHV93590.1 - 0.74 9.9 6.3 1 9.4 0.0 2.6 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Zn-ribbon_8 PF09723.10 AHV93590.1 - 3.2 8.0 5.6 4.5 7.5 0.7 2.4 2 0 0 2 2 2 0 Zinc ribbon domain Nitroreductase PF00881.24 AHV93591.1 - 3.5e-24 85.8 0.1 4.1e-24 85.5 0.1 1.1 1 0 0 1 1 1 1 Nitroreductase family DDE_Tnp_ISL3 PF01610.17 AHV93592.1 - 1.9e-64 217.6 1.1 2.9e-64 217.1 0.2 1.6 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV93592.1 - 1.4e-11 43.6 0.1 3.6e-11 42.3 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV93592.1 - 5.2e-09 36.6 11.2 1.1e-08 35.6 11.2 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV93592.1 - 0.0056 16.7 0.2 0.016 15.3 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain SLT_L PF14718.6 AHV93592.1 - 0.016 15.3 1.5 0.016 15.3 1.5 1.8 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain NOB1_Zn_bind PF08772.11 AHV93592.1 - 0.017 15.3 0.2 1.2 9.3 0.0 2.5 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-IS66 PF13005.7 AHV93592.1 - 1 9.8 6.6 3.6 8.1 6.6 2.0 1 0 0 1 1 1 0 zinc-finger binding domain of transposase IS66 ETF PF01012.21 AHV93593.1 - 1.5e-39 135.7 17.2 2.3e-39 135.2 17.2 1.2 1 0 0 1 1 1 1 Electron transfer flavoprotein domain ETF_alpha PF00766.19 AHV93593.1 - 3.5e-36 123.1 0.3 3.5e-36 123.1 0.3 2.8 2 1 1 3 3 3 1 Electron transfer flavoprotein FAD-binding domain Flagellin_N PF00669.20 AHV93594.1 - 2.1e-43 147.7 12.6 2.1e-43 147.7 12.6 2.5 2 0 0 2 2 2 1 Bacterial flagellin N-terminal helical region SQAPI PF16845.5 AHV93594.1 - 0.047 14.0 0.0 0.14 12.6 0.0 1.7 1 0 0 1 1 1 0 Aspartic acid proteinase inhibitor NleF_casp_inhib PF16809.5 AHV93594.1 - 0.093 12.6 0.6 0.34 10.8 0.2 1.9 2 0 0 2 2 2 0 NleF caspase inhibitor Syntaxin_2 PF14523.6 AHV93594.1 - 2.4 8.6 5.2 6.3 7.2 1.5 2.3 1 1 1 2 2 2 0 Syntaxin-like protein rve_3 PF13683.6 AHV93595.1 - 8.3e-32 108.8 0.1 4.5e-31 106.4 0.0 2.2 2 0 0 2 2 2 1 Integrase core domain rve PF00665.26 AHV93595.1 - 4.2e-25 88.2 0.0 1.1e-23 83.7 0.0 2.2 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 AHV93595.1 - 1.8e-11 44.0 8.6 3.6e-11 43.0 8.6 1.5 1 0 0 1 1 1 1 HTH-like domain rve_2 PF13333.6 AHV93595.1 - 5.8e-07 29.6 0.0 1.3e-06 28.5 0.0 1.6 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AHV93595.1 - 0.00041 20.6 0.0 0.00091 19.5 0.0 1.6 1 1 1 2 2 2 1 DDE domain Rhomboid_SP PF12595.8 AHV93595.1 - 0.0081 15.6 0.3 2.2 7.6 0.0 2.3 1 1 0 2 2 2 2 Rhomboid serine protease DUF1780 PF08682.10 AHV93595.1 - 0.13 11.9 1.0 1.6 8.3 0.3 2.2 2 0 0 2 2 2 0 Putative endonuclease, protein of unknown function (DUF1780) Caa3_CtaG PF09678.10 AHV93596.1 - 1.1e-50 172.2 29.0 1.4e-50 171.9 29.0 1.1 1 0 0 1 1 1 1 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) TMEM251 PF15190.6 AHV93596.1 - 0.051 13.5 4.2 0.11 12.5 4.2 1.5 1 0 0 1 1 1 0 Transmembrane protein 251 Transgly PF00912.22 AHV93598.1 - 2.1e-61 206.5 0.0 3.1e-61 205.9 0.0 1.3 1 0 0 1 1 1 1 Transglycosylase Transpeptidase PF00905.22 AHV93598.1 - 2.4e-41 142.0 0.1 8.6e-41 140.1 0.1 1.8 1 1 0 1 1 1 1 Penicillin binding protein transpeptidase domain PCB_OB PF17092.5 AHV93598.1 - 2.4e-18 66.9 0.0 5.6e-18 65.7 0.0 1.7 1 0 0 1 1 1 1 Penicillin-binding protein OB-like domain MreC PF04085.14 AHV93599.1 - 1.2e-35 122.6 0.0 2.2e-35 121.8 0.0 1.4 1 1 0 1 1 1 1 rod shape-determining protein MreC JIP_LZII PF16471.5 AHV93599.1 - 0.015 15.4 0.9 0.19 11.9 0.2 2.5 2 1 1 3 3 3 0 JNK-interacting protein leucine zipper II ZapB PF06005.12 AHV93599.1 - 0.044 14.2 0.3 0.067 13.6 0.3 1.3 1 0 0 1 1 1 0 Cell division protein ZapB YajC PF02699.15 AHV93599.1 - 0.07 13.0 0.5 1.2 9.1 0.1 2.4 2 0 0 2 2 2 0 Preprotein translocase subunit Peripla_BP_6 PF13458.6 AHV93600.1 - 1.6e-90 304.2 11.4 2e-90 303.9 11.4 1.0 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 AHV93600.1 - 2.9e-17 62.7 0.1 5.6e-17 61.8 0.1 1.4 1 1 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.28 AHV93600.1 - 5.1e-08 32.4 0.0 6.6e-08 32.0 0.0 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region DUF262 PF03235.14 AHV93600.1 - 0.0081 16.4 0.0 0.012 15.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF262 DNA_pol_lambd_f PF10391.9 AHV93600.1 - 0.033 14.0 0.1 0.099 12.5 0.1 1.8 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda Gp58 PF07902.11 AHV93600.1 - 0.064 11.5 0.1 0.11 10.7 0.0 1.4 2 0 0 2 2 2 0 gp58-like protein AIDA PF16168.5 AHV93600.1 - 0.068 13.3 0.5 0.22 11.6 0.5 1.8 1 0 0 1 1 1 0 Adhesin of bacterial autotransporter system, probable stalk MFS_1 PF07690.16 AHV93601.1 - 3.1e-31 108.6 71.6 1.2e-22 80.4 36.9 2.4 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 AHV93601.1 - 1.1e-10 41.1 26.4 1.3e-09 37.4 8.3 2.2 1 1 1 2 2 2 2 Sugar (and other) transporter LysR_substrate PF03466.20 AHV93602.1 - 2.8e-37 128.1 2.5 4.2e-37 127.6 2.5 1.2 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 AHV93602.1 - 1e-15 57.4 0.5 1e-15 57.4 0.5 2.0 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_20 PF12840.7 AHV93602.1 - 0.082 13.0 0.2 0.44 10.6 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain Iso_dh PF00180.20 AHV93604.1 - 6.9e-133 443.1 0.0 7.8e-133 442.9 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase DUF166 PF02593.14 AHV93604.1 - 0.12 11.9 0.0 2.1 7.9 0.0 2.1 1 1 1 2 2 2 0 Domain of unknown function OEP PF02321.18 AHV93605.1 - 8e-47 159.5 43.6 7.3e-26 91.1 19.1 2.0 2 0 0 2 2 2 2 Outer membrane efflux protein NAD_Gly3P_dh_C PF07479.14 AHV93607.1 - 5.8e-46 156.3 0.9 9.1e-46 155.7 0.9 1.3 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus NAD_Gly3P_dh_N PF01210.23 AHV93607.1 - 1.1e-36 126.1 0.0 1.7e-36 125.6 0.0 1.3 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus F420_oxidored PF03807.17 AHV93607.1 - 0.082 13.5 0.0 1.4 9.5 0.0 2.8 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.16 AHV93607.1 - 0.11 12.1 0.0 0.21 11.3 0.0 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA PLDc_2 PF13091.6 AHV93608.1 - 1.7e-14 53.9 0.0 3.3e-14 52.9 0.0 1.4 2 0 0 2 2 2 1 PLD-like domain PLDc PF00614.22 AHV93608.1 - 6e-06 26.2 0.1 1.2e-05 25.3 0.1 1.6 1 0 0 1 1 1 1 Phospholipase D Active site motif EamA PF00892.20 AHV93609.1 - 6e-22 78.3 17.1 6e-22 78.3 17.1 1.9 2 0 0 2 2 2 1 EamA-like transporter family BPD_transp_1 PF00528.22 AHV93610.1 - 1.7e-27 96.4 6.3 1.8e-27 96.2 6.3 1.0 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component Trep_Strep PF09605.10 AHV93610.1 - 1.4 8.9 9.2 0.85 9.6 6.2 1.8 1 1 0 2 2 2 0 Hypothetical bacterial integral membrane protein (Trep_Strep) TonB_dep_Rec PF00593.24 AHV93612.1 - 2e-37 130.2 19.0 2e-37 130.2 19.0 1.4 1 1 0 1 1 1 1 TonB dependent receptor Plug PF07715.15 AHV93612.1 - 3.5e-16 59.7 2.3 6.5e-16 58.8 2.3 1.5 1 0 0 1 1 1 1 TonB-dependent Receptor Plug Domain OmpA PF00691.20 AHV93613.1 - 5.4e-26 90.8 0.1 7.7e-26 90.3 0.1 1.2 1 0 0 1 1 1 1 OmpA family Molybdopterin PF00384.22 AHV93615.1 - 5.1e-56 190.5 0.0 6.3e-56 190.2 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 AHV93615.1 - 3.3e-28 97.9 0.1 7.1e-28 96.9 0.1 1.6 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain CoA_transf_3 PF02515.17 AHV93616.1 - 9.9e-107 357.2 1.3 1.2e-106 357.0 1.3 1.0 1 0 0 1 1 1 1 CoA-transferase family III SBP_bac_5 PF00496.22 AHV93617.1 - 1.3e-97 327.2 10.0 1.8e-97 326.7 10.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Ribosomal_L22 PF00237.19 AHV93618.1 - 1.9e-32 111.5 1.3 2.1e-32 111.4 1.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e NicO PF03824.16 AHV93619.1 - 5.4e-39 134.2 27.2 4.1e-23 82.1 11.6 2.1 1 1 1 2 2 2 2 High-affinity nickel-transport protein DsbD PF02683.15 AHV93619.1 - 0.00018 21.5 3.2 0.00018 21.5 3.2 2.5 2 1 0 2 2 2 1 Cytochrome C biogenesis protein transmembrane region DsbD_2 PF13386.6 AHV93619.1 - 0.77 9.7 29.1 0.17 11.8 18.4 2.6 1 1 1 2 2 2 0 Cytochrome C biogenesis protein transmembrane region Na_Pi_cotrans PF02690.15 AHV93620.1 - 5.4e-46 156.2 19.2 6.3e-34 117.1 7.6 2.3 2 0 0 2 2 2 2 Na+/Pi-cotransporter PhoU PF01895.19 AHV93620.1 - 0.00011 22.6 7.3 0.027 14.9 0.8 2.4 2 0 0 2 2 2 2 PhoU domain Oxidored_q2 PF00420.24 AHV93620.1 - 3.2 7.4 11.7 1.1 8.9 3.5 3.0 1 1 2 3 3 3 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L rve PF00665.26 AHV93621.1 - 7e-21 74.6 0.3 2.3e-20 73.0 0.0 1.7 2 0 0 2 2 2 1 Integrase core domain rve_3 PF13683.6 AHV93621.1 - 9.8e-20 70.1 2.7 1.4e-19 69.6 2.7 1.2 1 0 0 1 1 1 1 Integrase core domain PG_binding_2 PF08823.11 AHV93621.1 - 0.019 15.3 0.0 0.027 14.8 0.0 1.3 1 0 0 1 1 1 0 Putative peptidoglycan binding domain DDE_Tnp_1_2 PF13586.6 AHV93621.1 - 0.093 13.1 0.4 0.22 11.9 0.1 1.8 1 1 1 2 2 2 0 Transposase DDE domain rve_3 PF13683.6 AHV93622.1 - 8.3e-32 108.8 0.1 4.5e-31 106.4 0.0 2.2 2 0 0 2 2 2 1 Integrase core domain rve PF00665.26 AHV93622.1 - 4.2e-25 88.2 0.0 1.1e-23 83.7 0.0 2.2 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 AHV93622.1 - 1.8e-11 44.0 8.6 3.6e-11 43.0 8.6 1.5 1 0 0 1 1 1 1 HTH-like domain rve_2 PF13333.6 AHV93622.1 - 5.8e-07 29.6 0.0 1.3e-06 28.5 0.0 1.6 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AHV93622.1 - 0.00041 20.6 0.0 0.00091 19.5 0.0 1.6 1 1 1 2 2 2 1 DDE domain Rhomboid_SP PF12595.8 AHV93622.1 - 0.0081 15.6 0.3 2.2 7.6 0.0 2.3 1 1 0 2 2 2 2 Rhomboid serine protease DUF1780 PF08682.10 AHV93622.1 - 0.13 11.9 1.0 1.6 8.3 0.3 2.2 2 0 0 2 2 2 0 Putative endonuclease, protein of unknown function (DUF1780) Sigma70_r4_2 PF08281.12 AHV93623.1 - 7.2e-13 48.0 0.3 2.1e-12 46.5 0.3 1.9 1 1 0 1 1 1 1 Sigma-70, region 4 Sigma70_r2 PF04542.14 AHV93623.1 - 3.3e-10 39.6 0.5 6.6e-10 38.6 0.3 1.6 2 0 0 2 2 2 1 Sigma-70 region 2 Sigma70_r4 PF04545.16 AHV93623.1 - 6.9e-06 25.5 0.0 1.4e-05 24.5 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.6 AHV93623.1 - 9.4e-06 25.3 0.1 5.2e-05 22.9 0.0 2.3 2 0 0 2 2 2 1 Homeodomain-like domain Sigma70_ECF PF07638.11 AHV93623.1 - 0.00022 21.2 0.3 0.00027 20.9 0.3 1.2 1 0 0 1 1 1 1 ECF sigma factor GerE PF00196.19 AHV93623.1 - 0.00024 20.6 0.1 0.00075 19.0 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family HTH_38 PF13936.6 AHV93623.1 - 0.00051 19.7 0.3 0.0014 18.3 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_40 PF14493.6 AHV93623.1 - 0.0036 17.7 0.5 0.0095 16.4 0.1 1.9 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.6 AHV93623.1 - 0.0092 15.5 0.0 0.029 13.9 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 AHV93623.1 - 0.011 15.8 0.9 0.02 14.9 0.2 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_28 PF13518.6 AHV93623.1 - 0.016 15.4 0.0 0.061 13.5 0.0 2.1 1 0 0 1 1 1 0 Helix-turn-helix domain KORA PF16509.5 AHV93623.1 - 0.024 14.9 0.2 0.096 13.0 0.0 1.9 2 0 0 2 2 2 0 TrfB plasmid transcriptional repressor HTH_11 PF08279.12 AHV93623.1 - 0.062 13.3 0.4 0.23 11.4 0.0 2.0 2 0 0 2 2 2 0 HTH domain HTH_36 PF13730.6 AHV93623.1 - 0.067 13.2 0.0 0.19 11.7 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_10 PF04967.12 AHV93623.1 - 0.091 12.6 0.0 0.22 11.4 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain HU-CCDC81_euk_2 PF18289.1 AHV93623.1 - 0.13 12.4 0.1 7.7 6.7 0.0 2.8 3 1 1 4 4 3 0 CCDC81 eukaryotic HU domain 2 DUF2774 PF11242.8 AHV93623.1 - 0.14 12.4 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2774) CbiQ PF02361.16 AHV93624.1 - 2.8e-19 69.6 10.7 6.1e-18 65.3 10.7 2.2 1 1 0 1 1 1 1 Cobalt transport protein Cation_ATPase_N PF00690.26 AHV93624.1 - 0.18 11.5 1.5 0.43 10.3 0.7 2.2 2 1 0 2 2 2 0 Cation transporter/ATPase, N-terminus YfhO PF09586.10 AHV93624.1 - 0.52 8.5 1.4 0.63 8.2 1.4 1.0 1 0 0 1 1 1 0 Bacterial membrane protein YfhO CopD PF05425.13 AHV93625.1 - 1.2e-10 41.7 16.8 1.2e-10 41.7 16.8 1.8 2 0 0 2 2 2 1 Copper resistance protein D DUF1772 PF08592.11 AHV93625.1 - 8e-05 23.0 14.3 0.0001 22.7 14.3 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1772) DUF3611 PF12263.8 AHV93625.1 - 0.011 15.6 4.7 0.027 14.4 3.7 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF3611) UPF0093 PF03653.13 AHV93625.1 - 0.02 15.1 8.9 0.058 13.6 8.9 2.0 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0093) TRAM_LAG1_CLN8 PF03798.16 AHV93625.1 - 0.39 10.4 5.1 0.038 13.7 0.7 1.5 2 0 0 2 2 2 0 TLC domain Ribosomal_L3 PF00297.22 AHV93626.1 - 2.3e-18 66.4 3.4 4.6e-18 65.3 1.0 2.2 1 1 2 3 3 3 2 Ribosomal protein L3 Fapy_DNA_glyco PF01149.24 AHV93627.1 - 1.6e-25 89.9 0.1 3e-25 89.1 0.1 1.4 1 0 0 1 1 1 1 Formamidopyrimidine-DNA glycosylase N-terminal domain H2TH PF06831.14 AHV93627.1 - 4.1e-22 78.0 0.0 5.8e-22 77.5 0.0 1.2 1 0 0 1 1 1 1 Formamidopyrimidine-DNA glycosylase H2TH domain zf-FPG_IleRS PF06827.14 AHV93627.1 - 2.3e-13 49.7 7.8 2.3e-13 49.7 7.8 1.7 2 0 0 2 2 2 1 Zinc finger found in FPG and IleRS DZR PF12773.7 AHV93627.1 - 0.048 13.7 1.3 0.081 13.0 1.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon FbpA PF05833.11 AHV93627.1 - 0.083 11.6 0.0 0.1 11.3 0.0 1.1 1 0 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) Auto_anti-p27 PF06677.12 AHV93627.1 - 0.11 12.7 1.8 0.22 11.7 1.8 1.5 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) OrfB_Zn_ribbon PF07282.11 AHV93627.1 - 0.21 11.6 0.6 0.42 10.6 0.6 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.10 AHV93627.1 - 0.55 10.4 2.7 2.3 8.4 2.9 1.9 1 1 1 2 2 2 0 Zinc ribbon domain Zn_ribbon_SprT PF17283.2 AHV93627.1 - 1.4 8.9 7.2 2.5 8.1 7.2 1.4 1 0 0 1 1 1 0 SprT-like zinc ribbon domain rve PF00665.26 AHV93628.1 - 3.2e-32 111.2 0.7 4.3e-32 110.8 0.1 1.5 2 0 0 2 2 1 1 Integrase core domain LZ_Tnp_IS481 PF13011.6 AHV93628.1 - 1.9e-21 76.3 2.6 1.1e-19 70.7 0.4 2.6 1 1 1 2 2 2 1 leucine-zipper of insertion element IS481 rve_3 PF13683.6 AHV93628.1 - 9.1e-19 67.0 2.8 2.1e-18 65.8 2.8 1.7 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.6 AHV93628.1 - 1.7e-16 59.5 4.2 1.2e-07 31.3 0.1 2.7 2 0 0 2 2 2 2 Homeodomain-like domain HTH_28 PF13518.6 AHV93628.1 - 2.9e-15 56.1 5.0 5.9e-11 42.3 0.1 3.3 3 0 0 3 3 3 2 Helix-turn-helix domain HTH_29 PF13551.6 AHV93628.1 - 1.8e-11 43.9 0.5 2.6e-06 27.4 0.0 2.6 2 0 0 2 2 2 2 Winged helix-turn helix HTH_32 PF13565.6 AHV93628.1 - 3.8e-10 40.2 0.7 3.8e-10 40.2 0.7 2.4 2 1 0 2 2 2 1 Homeodomain-like domain HTH_38 PF13936.6 AHV93628.1 - 5.5e-06 26.1 0.5 1.9e-05 24.3 0.4 2.1 2 0 0 2 2 1 1 Helix-turn-helix domain MarR_2 PF12802.7 AHV93628.1 - 3e-05 23.8 3.0 0.00037 20.3 1.1 2.6 2 0 0 2 2 2 1 MarR family HTH_31 PF13560.6 AHV93628.1 - 6.8e-05 23.1 1.5 0.0033 17.8 0.3 3.2 3 0 0 3 3 3 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 AHV93628.1 - 0.00013 21.4 0.1 0.0016 17.9 0.2 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 YdaS_antitoxin PF15943.5 AHV93628.1 - 0.0003 20.6 0.2 0.33 10.9 0.0 2.8 2 0 0 2 2 2 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT Sigma70_r4_2 PF08281.12 AHV93628.1 - 0.00043 19.9 0.1 0.092 12.4 0.2 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_Tnp_ISL3 PF13542.6 AHV93628.1 - 0.00056 19.3 8.6 0.0047 16.3 0.6 3.9 4 0 0 4 4 3 1 Helix-turn-helix domain of transposase family ISL3 HTH_24 PF13412.6 AHV93628.1 - 0.00062 19.3 0.2 0.0045 16.5 0.3 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_3 PF01381.22 AHV93628.1 - 0.00094 19.2 0.6 0.041 14.0 0.2 2.5 2 0 0 2 2 2 1 Helix-turn-helix LacI PF00356.21 AHV93628.1 - 0.0015 18.3 1.6 0.0044 16.8 0.6 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family Trp_repressor PF01371.19 AHV93628.1 - 0.0016 18.5 0.2 0.012 15.7 0.1 2.2 2 0 0 2 2 2 1 Trp repressor protein HTH_Crp_2 PF13545.6 AHV93628.1 - 0.002 18.1 0.3 0.013 15.4 0.1 2.3 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain SpoIIID PF12116.8 AHV93628.1 - 0.003 17.6 0.0 1.1 9.4 0.0 2.4 2 0 0 2 2 2 1 Stage III sporulation protein D HTH_Tnp_1 PF01527.20 AHV93628.1 - 0.0043 17.3 0.4 0.11 12.8 0.0 2.7 1 1 1 2 2 2 1 Transposase CENP-B_N PF04218.13 AHV93628.1 - 0.0046 16.6 0.0 3.7 7.2 0.0 2.3 2 0 0 2 2 2 1 CENP-B N-terminal DNA-binding domain Fe_dep_repress PF01325.19 AHV93628.1 - 0.0051 17.0 0.0 0.086 13.1 0.1 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.20 AHV93628.1 - 0.0056 16.5 0.0 2.2 8.2 0.0 2.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 AHV93628.1 - 0.0078 16.0 0.9 0.12 12.1 0.4 2.5 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_17 PF12728.7 AHV93628.1 - 0.0082 16.3 0.6 6.1 7.1 0.0 3.3 3 1 0 3 3 3 0 Helix-turn-helix domain HTH_AsnC-type PF13404.6 AHV93628.1 - 0.0095 15.7 2.3 0.13 12.1 0.9 2.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain GntR PF00392.21 AHV93628.1 - 0.013 15.1 0.8 1.2 8.8 0.3 2.5 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_psq PF05225.16 AHV93628.1 - 0.017 14.8 0.5 8.2 6.3 0.0 2.8 3 0 0 3 3 3 0 helix-turn-helix, Psq domain HTH_11 PF08279.12 AHV93628.1 - 0.026 14.5 0.5 0.15 12.0 0.5 2.2 2 0 0 2 2 2 0 HTH domain HTH_10 PF04967.12 AHV93628.1 - 0.028 14.2 0.0 0.17 11.7 0.1 2.2 2 0 0 2 2 2 0 HTH DNA binding domain RepB PF07506.11 AHV93628.1 - 0.03 14.4 0.1 3.7 7.6 0.1 2.3 1 1 1 2 2 2 0 RepB plasmid partitioning protein HTH_Tnp_4 PF13613.6 AHV93628.1 - 0.033 13.9 0.1 0.13 12.0 0.1 2.0 2 0 0 2 2 1 0 Helix-turn-helix of DDE superfamily endonuclease HTH_35 PF13693.6 AHV93628.1 - 0.034 14.2 1.2 0.3 11.2 0.4 2.7 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding HTH_30 PF13556.6 AHV93628.1 - 0.035 13.9 0.0 2 8.3 0.0 2.5 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain P22_Cro PF14549.6 AHV93628.1 - 0.062 13.2 1.5 9.6 6.1 0.1 2.5 2 0 0 2 2 2 0 DNA-binding transcriptional regulator Cro DDE_Tnp_IS240 PF13610.6 AHV93628.1 - 0.068 13.4 0.1 0.1 12.9 0.1 1.3 1 0 0 1 1 1 0 DDE domain HTH_37 PF13744.6 AHV93628.1 - 0.068 13.1 0.1 0.55 10.2 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain UPF0175 PF03683.13 AHV93628.1 - 0.073 12.8 0.3 0.56 10.0 0.1 2.4 2 1 0 2 2 2 0 Uncharacterised protein family (UPF0175) HTH_1 PF00126.27 AHV93628.1 - 0.098 12.6 1.9 7.3 6.6 0.2 2.6 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family Crp PF00325.20 AHV93628.1 - 0.11 12.2 2.8 0.16 11.6 0.4 2.6 3 0 0 3 3 3 0 Bacterial regulatory proteins, crp family DUF746 PF05344.11 AHV93628.1 - 0.11 12.3 0.1 0.98 9.3 0.0 2.3 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) MarR PF01047.22 AHV93628.1 - 0.11 12.4 0.1 0.36 10.8 0.1 1.8 2 0 0 2 2 1 0 MarR family KORA PF16509.5 AHV93628.1 - 0.14 12.5 0.1 14 6.0 0.0 3.0 3 0 0 3 3 3 0 TrfB plasmid transcriptional repressor HTH_36 PF13730.6 AHV93628.1 - 0.17 11.8 0.0 5.2 7.1 0.0 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_Tnp_Tc3_2 PF01498.18 AHV93628.1 - 0.38 11.0 2.7 0.63 10.3 0.1 2.6 3 0 0 3 3 1 0 Transposase MerR PF00376.23 AHV93628.1 - 0.77 9.6 6.8 3.2 7.6 0.0 3.6 4 0 0 4 4 2 0 MerR family regulatory protein DDE_Tnp_ISL3 PF01610.17 AHV93629.1 - 7.9e-65 218.9 1.2 1.1e-64 218.4 0.3 1.6 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV93629.1 - 1.4e-11 43.6 0.1 3.6e-11 42.3 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV93629.1 - 5.3e-09 36.6 11.2 1.1e-08 35.6 11.2 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV93629.1 - 0.0056 16.7 0.2 0.016 15.3 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain SLT_L PF14718.6 AHV93629.1 - 0.016 15.3 1.5 0.016 15.3 1.5 1.8 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain NOB1_Zn_bind PF08772.11 AHV93629.1 - 0.017 15.2 0.2 1.2 9.3 0.0 2.5 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-IS66 PF13005.7 AHV93629.1 - 8.2 6.9 9.6 3.6 8.1 6.6 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 AFG1_ATPase PF03969.16 AHV93630.1 - 1e-126 422.7 0.2 1.2e-126 422.5 0.2 1.0 1 0 0 1 1 1 1 AFG1-like ATPase IstB_IS21 PF01695.17 AHV93630.1 - 0.0014 18.4 0.0 0.0034 17.1 0.0 1.6 2 0 0 2 2 2 1 IstB-like ATP binding protein DNAJ_related PF12339.8 AHV93630.1 - 0.025 14.8 0.1 0.055 13.7 0.1 1.5 1 0 0 1 1 1 0 DNA-J related protein AAA_16 PF13191.6 AHV93630.1 - 0.03 14.7 3.1 11 6.4 0.1 3.3 2 2 1 3 3 3 0 AAA ATPase domain Bac_DnaA PF00308.18 AHV93630.1 - 0.1 12.4 0.0 2.1 8.1 0.0 2.2 2 0 0 2 2 2 0 Bacterial dnaA protein AAA_29 PF13555.6 AHV93630.1 - 0.23 11.3 0.0 0.43 10.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain L27_1 PF09058.10 AHV93630.1 - 0.44 10.6 3.2 4.1 7.5 0.2 3.1 3 0 0 3 3 3 0 L27_1 SIS PF01380.22 AHV93631.1 - 2.5e-29 101.8 0.1 7.2e-29 100.3 0.4 1.6 2 0 0 2 2 2 1 SIS domain CBS PF00571.28 AHV93631.1 - 1.3e-18 67.2 1.4 8.5e-08 32.5 0.1 3.1 3 0 0 3 3 3 2 CBS domain SIS_2 PF13580.6 AHV93631.1 - 0.0013 18.8 0.4 0.012 15.6 0.0 2.2 1 1 1 2 2 2 1 SIS domain DUF3659 PF12396.8 AHV93631.1 - 0.063 13.2 0.2 0.53 10.3 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3659) rve_3 PF13683.6 AHV93632.1 - 8.3e-32 108.8 0.1 4.5e-31 106.4 0.0 2.2 2 0 0 2 2 2 1 Integrase core domain rve PF00665.26 AHV93632.1 - 4.2e-25 88.2 0.0 1.1e-23 83.7 0.0 2.2 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 AHV93632.1 - 1.8e-11 44.0 8.6 3.6e-11 43.0 8.6 1.5 1 0 0 1 1 1 1 HTH-like domain rve_2 PF13333.6 AHV93632.1 - 5.8e-07 29.6 0.0 1.3e-06 28.5 0.0 1.6 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AHV93632.1 - 0.00041 20.6 0.0 0.00091 19.5 0.0 1.6 1 1 1 2 2 2 1 DDE domain Rhomboid_SP PF12595.8 AHV93632.1 - 0.0081 15.6 0.3 2.2 7.6 0.0 2.3 1 1 0 2 2 2 2 Rhomboid serine protease DUF1780 PF08682.10 AHV93632.1 - 0.13 11.9 1.0 1.6 8.3 0.3 2.2 2 0 0 2 2 2 0 Putative endonuclease, protein of unknown function (DUF1780) SpoIIM PF01944.17 AHV93633.1 - 0.0071 16.4 2.4 0.0087 16.1 2.4 1.0 1 0 0 1 1 1 1 Stage II sporulation protein M TctC PF03401.14 AHV93634.1 - 1.8e-80 269.9 0.2 2.1e-80 269.7 0.2 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor SBP_bac_8 PF13416.6 AHV93634.1 - 0.0047 16.8 4.9 0.36 10.6 4.9 2.2 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein ABC_tran PF00005.27 AHV93635.1 - 1.1e-32 113.4 0.0 2e-32 112.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 AHV93635.1 - 3.1e-12 46.9 0.9 1.6e-06 28.1 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 AHV93635.1 - 6.5e-05 23.5 0.0 0.00011 22.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 AHV93635.1 - 0.00026 20.5 0.1 0.5 9.8 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 AHV93635.1 - 0.00067 19.5 0.0 0.17 11.6 0.1 2.1 1 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 AHV93635.1 - 0.001 19.5 0.3 0.024 15.0 0.3 2.8 1 1 1 2 2 2 1 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.22 AHV93635.1 - 0.0016 17.7 0.3 0.42 9.7 0.1 2.1 2 0 0 2 2 2 2 NB-ARC domain AAA_24 PF13479.6 AHV93635.1 - 0.002 17.9 0.1 2.1 8.0 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.6 AHV93635.1 - 0.0022 18.4 0.0 0.0048 17.3 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 AHV93635.1 - 0.0033 17.1 0.0 0.0071 16.1 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 AHV93635.1 - 0.0085 16.0 0.0 0.016 15.1 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_30 PF13604.6 AHV93635.1 - 0.017 14.9 0.1 0.1 12.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain T2SSE PF00437.20 AHV93635.1 - 0.021 13.9 0.0 0.03 13.4 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein TsaE PF02367.17 AHV93635.1 - 0.028 14.4 0.0 0.076 13.0 0.0 1.7 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE DLIC PF05783.11 AHV93635.1 - 0.043 12.7 0.0 0.065 12.1 0.0 1.2 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) Hydrolase PF00702.26 AHV93635.1 - 0.052 13.8 0.0 0.12 12.7 0.0 1.5 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase AAA_18 PF13238.6 AHV93635.1 - 0.054 14.0 0.0 2.9 8.5 0.0 2.4 2 1 0 2 2 2 0 AAA domain SRP54 PF00448.22 AHV93635.1 - 0.081 12.6 0.0 0.17 11.5 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Rad17 PF03215.15 AHV93635.1 - 0.087 12.7 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain SbcCD_C PF13558.6 AHV93635.1 - 0.092 13.0 0.0 0.24 11.6 0.0 1.8 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit ATPase PF06745.13 AHV93635.1 - 0.11 11.8 0.5 2.8 7.2 0.1 2.1 2 0 0 2 2 2 0 KaiC RuvB_N PF05496.12 AHV93635.1 - 0.12 12.1 0.3 3.5 7.3 0.0 2.3 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain EamA PF00892.20 AHV93636.1 - 7.2e-22 78.0 30.7 1.4e-11 44.7 15.4 2.2 2 0 0 2 2 2 2 EamA-like transporter family ABC2_membrane_3 PF12698.7 AHV93637.1 - 2.1e-32 112.6 8.7 2.6e-32 112.3 8.7 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 AHV93637.1 - 1.2e-26 93.5 9.0 1.2e-26 93.5 9.0 2.6 3 0 0 3 3 3 1 ABC-2 type transporter ABC2_membrane_2 PF12679.7 AHV93637.1 - 4.9e-20 72.0 8.6 7.1e-20 71.4 8.6 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 AHV93637.1 - 4.4e-06 26.8 6.5 4.4e-06 26.8 6.5 2.6 3 0 0 3 3 3 1 ABC-2 family transporter protein TctC PF03401.14 AHV93638.1 - 7.5e-82 274.5 0.1 8.9e-82 274.2 0.1 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor Mur_ligase_M PF08245.12 AHV93639.1 - 2.1e-90 301.9 0.0 1.3e-45 155.8 0.0 2.2 2 0 0 2 2 2 2 Mur ligase middle domain Mur_ligase_C PF02875.21 AHV93639.1 - 3.4e-37 126.6 0.0 1.2e-17 63.9 0.0 4.0 3 0 0 3 3 3 2 Mur ligase family, glutamate ligase domain Mur_ligase PF01225.25 AHV93639.1 - 1.9e-10 40.9 0.8 1.9e-10 40.9 0.8 3.3 4 0 0 4 4 4 1 Mur ligase family, catalytic domain VCH_CASS14 PF18315.1 AHV93639.1 - 0.056 13.5 0.0 0.19 11.8 0.0 1.9 1 0 0 1 1 1 0 Integron cassette protein VCH_CASS1 chain Ribosomal_S21 PF01165.20 AHV93640.1 - 7.8e-21 73.5 2.3 9.7e-21 73.2 2.3 1.1 1 0 0 1 1 1 1 Ribosomal protein S21 Sas10 PF09368.10 AHV93640.1 - 0.015 15.7 2.5 0.017 15.6 2.5 1.1 1 0 0 1 1 1 0 Sas10 C-terminal domain Laminin_I PF06008.14 AHV93640.1 - 0.073 12.8 0.2 0.081 12.6 0.2 1.0 1 0 0 1 1 1 0 Laminin Domain I Glyco_hydro_3 PF00933.21 AHV93641.1 - 1.8e-75 254.2 0.0 2.4e-75 253.9 0.0 1.0 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain TetR_C_7 PF14246.6 AHV93642.1 - 9.8e-08 32.0 0.8 1.2e-07 31.8 0.8 1.2 1 0 0 1 1 1 1 AefR-like transcriptional repressor, C-terminal domain TetR_C_11 PF16859.5 AHV93642.1 - 9.7e-06 25.9 6.2 1.4e-05 25.4 5.9 1.4 1 1 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain NBD_C PF17042.5 AHV93642.1 - 0.029 14.9 0.0 0.04 14.4 0.0 1.2 1 0 0 1 1 1 0 Nucleotide-binding C-terminal domain TSKS PF15358.6 AHV93642.1 - 0.044 12.2 0.2 0.057 11.8 0.2 1.1 1 0 0 1 1 1 0 Testis-specific serine kinase substrate TetR_C_31 PF17940.1 AHV93642.1 - 0.82 9.9 10.6 1.3 9.2 10.6 1.5 1 1 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain Lactamase_B PF00753.27 AHV93643.1 - 0.0003 20.9 0.4 0.0012 18.8 0.3 2.0 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 AHV93643.1 - 0.0094 15.5 0.0 0.011 15.2 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Aminotran_1_2 PF00155.21 AHV93644.1 - 5.3e-20 71.9 0.0 7.5e-20 71.4 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II GntR PF00392.21 AHV93644.1 - 2.2e-14 52.8 0.8 2.2e-14 52.8 0.8 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_41 PF14502.6 AHV93644.1 - 0.0084 15.8 0.0 0.017 14.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 AHV93644.1 - 0.061 13.3 4.3 0.11 12.4 0.6 3.3 4 0 0 4 4 4 0 Crp-like helix-turn-helix domain DUF1400 PF07176.11 AHV93644.1 - 0.16 12.2 0.1 0.52 10.6 0.0 1.8 2 0 0 2 2 2 0 Alpha/beta hydrolase of unknown function (DUF1400) Fe_dep_repress PF01325.19 AHV93644.1 - 0.18 12.0 0.0 0.43 10.8 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_24 PF13412.6 AHV93644.1 - 0.62 9.7 0.0 0.62 9.7 0.0 2.3 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding MLTR_LBD PF17765.1 AHV93645.1 - 8.5e-36 123.6 8.6 1.4e-35 122.9 8.6 1.3 1 0 0 1 1 1 1 MmyB-like transcription regulator ligand binding domain HTH_31 PF13560.6 AHV93645.1 - 3.9e-15 55.9 3.1 3.9e-15 55.9 3.1 2.0 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_3 PF01381.22 AHV93645.1 - 0.015 15.3 0.0 0.024 14.7 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix Acetyltransf_1 PF00583.25 AHV93646.1 - 1.9e-09 37.7 0.0 2.7e-09 37.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 AHV93646.1 - 0.00016 22.0 0.0 0.00022 21.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 AHV93646.1 - 0.002 18.0 0.0 0.0029 17.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 AHV93646.1 - 0.0022 18.7 0.0 0.0028 18.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain EAL PF00563.20 AHV93647.1 - 1.1e-67 228.1 0.0 1.6e-67 227.5 0.0 1.3 1 0 0 1 1 1 1 EAL domain GGDEF PF00990.21 AHV93647.1 - 2.8e-06 27.2 0.0 4.7e-06 26.4 0.0 1.3 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain ACP PF06857.11 AHV93647.1 - 0.051 13.8 0.0 21 5.4 0.0 3.7 4 0 0 4 4 4 0 Malonate decarboxylase delta subunit (MdcD) Bac_luciferase PF00296.20 AHV93648.1 - 9.1e-68 229.0 5.1 1.4e-67 228.4 5.1 1.3 1 0 0 1 1 1 1 Luciferase-like monooxygenase DUF3863 PF12979.7 AHV93648.1 - 0.04 12.8 0.0 0.066 12.1 0.0 1.2 1 0 0 1 1 1 0 Domain of Unknown Function with PDB structure (DUF3863) CRCB PF02537.15 AHV93649.1 - 5.8e-24 84.2 5.6 6.9e-24 84.0 5.6 1.0 1 0 0 1 1 1 1 CrcB-like protein, Camphor Resistance (CrcB) Phage_holin_3_3 PF16083.5 AHV93649.1 - 0.0098 16.0 2.0 0.0098 16.0 2.0 1.9 1 1 1 2 2 2 1 LydA holin phage, holin superfamily III DUF4191 PF13829.6 AHV93649.1 - 0.16 11.3 0.9 0.18 11.1 0.9 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) Transgly_assoc PF04226.13 AHV93649.1 - 1.9 8.8 11.9 0.18 12.1 4.2 2.9 2 2 0 2 2 2 0 Transglycosylase associated protein Glycos_transf_2 PF00535.26 AHV93650.1 - 3.5e-24 85.5 0.8 1.2e-23 83.8 0.2 2.0 2 1 0 3 3 3 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.9 AHV93650.1 - 1.5e-10 41.0 0.0 2.3e-09 37.2 0.1 2.0 1 1 1 2 2 2 1 Glycosyltransferase like family 2 Glyco_tranf_2_3 PF13641.6 AHV93650.1 - 1.2e-09 38.4 0.4 1.6e-08 34.8 0.4 2.4 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 AHV93650.1 - 0.00099 19.6 0.1 0.0034 17.9 0.1 2.0 1 0 0 1 1 1 1 Glycosyl transferase family 2 DDE_Tnp_ISL3 PF01610.17 AHV93651.1 - 7.9e-65 218.9 1.2 1.1e-64 218.4 0.3 1.6 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV93651.1 - 1.4e-11 43.6 0.1 3.6e-11 42.3 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV93651.1 - 5.3e-09 36.6 11.2 1.1e-08 35.6 11.2 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV93651.1 - 0.0056 16.7 0.2 0.016 15.3 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain SLT_L PF14718.6 AHV93651.1 - 0.016 15.3 1.5 0.016 15.3 1.5 1.8 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain NOB1_Zn_bind PF08772.11 AHV93651.1 - 0.017 15.2 0.2 1.2 9.3 0.0 2.5 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-IS66 PF13005.7 AHV93651.1 - 8.2 6.9 9.6 3.6 8.1 6.6 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 EamA PF00892.20 AHV93652.1 - 2e-25 89.5 42.1 2.2e-18 66.7 15.1 2.0 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.16 AHV93652.1 - 0.0054 16.1 13.9 0.016 14.5 3.1 2.2 1 1 1 2 2 2 2 Triose-phosphate Transporter family p53-inducible11 PF14936.6 AHV93652.1 - 7.4 6.6 10.1 6.9 6.7 0.5 3.0 1 1 0 2 2 2 0 Tumour protein p53-inducible protein 11 NUDIX_4 PF14815.6 AHV93653.1 - 3.5e-24 84.9 0.1 7e-24 83.9 0.1 1.5 1 0 0 1 1 1 1 NUDIX domain HhH-GPD PF00730.25 AHV93653.1 - 4.6e-21 75.3 0.0 7.4e-21 74.6 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 AHV93653.1 - 0.00011 21.8 0.1 0.00037 20.2 0.0 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.9 AHV93653.1 - 0.0058 16.9 7.7 0.011 16.0 7.7 1.5 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III Whib PF02467.16 AHV93653.1 - 0.17 12.5 3.4 1.5 9.4 0.7 2.8 3 0 0 3 3 3 0 Transcription factor WhiB DDE_Tnp_ISL3 PF01610.17 AHV93654.1 - 7.4e-65 219.0 1.2 1.1e-64 218.5 0.3 1.6 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV93654.1 - 1.4e-11 43.6 0.1 3.5e-11 42.3 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV93654.1 - 5.2e-09 36.6 11.2 1.1e-08 35.6 11.2 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV93654.1 - 0.0054 16.8 0.2 0.015 15.3 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain SLT_L PF14718.6 AHV93654.1 - 0.015 15.4 1.5 0.015 15.4 1.5 1.8 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain NOB1_Zn_bind PF08772.11 AHV93654.1 - 0.017 15.3 0.2 1.2 9.3 0.0 2.5 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-IS66 PF13005.7 AHV93654.1 - 7.9 7.0 9.6 3.5 8.1 6.6 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 MFS_1 PF07690.16 AHV93655.1 - 1e-34 120.0 50.9 2.5e-26 92.4 39.6 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 AHV93655.1 - 3.1e-08 32.9 13.8 3.1e-08 32.9 13.8 3.0 2 1 0 3 3 3 1 Sugar (and other) transporter MFS_4 PF06779.14 AHV93655.1 - 0.00089 18.6 37.0 0.0053 16.1 37.0 1.9 1 1 0 1 1 1 1 Uncharacterised MFS-type transporter YbfB OATP PF03137.20 AHV93655.1 - 0.087 11.1 8.2 0.023 13.0 4.5 1.9 2 0 0 2 2 2 0 Organic Anion Transporter Polypeptide (OATP) family DltD PF04914.12 AHV93656.1 - 3.2e-55 187.9 0.0 1.9e-54 185.4 0.0 1.8 1 1 0 1 1 1 1 DltD protein Glycos_transf_2 PF00535.26 AHV93657.1 - 1.9e-26 92.9 0.0 2.7e-26 92.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 AHV93657.1 - 1e-09 38.6 0.1 1.5e-09 38.1 0.1 1.4 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 AHV93657.1 - 1.9e-06 27.6 0.0 5.1e-06 26.2 0.0 1.7 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 AHV93657.1 - 2.5e-05 24.7 0.3 5.5e-05 23.6 0.3 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.6 AHV93657.1 - 0.0053 16.2 0.0 0.01 15.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 21 Ag332 PF04671.12 AHV93657.1 - 0.31 11.0 1.7 0.65 10.0 1.7 1.5 1 1 0 1 1 1 0 Erythrocyte membrane-associated giant protein antigen 332 Glyco_trans_2_3 PF13632.6 AHV93657.1 - 0.5 10.2 4.7 6.4 6.6 4.7 2.2 1 1 0 1 1 1 0 Glycosyl transferase family group 2 cobW PF02492.19 AHV93658.1 - 2.1e-36 125.2 0.0 2.7e-36 124.8 0.0 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CobW_C PF07683.14 AHV93658.1 - 2.7e-11 43.3 0.1 8.4e-11 41.7 0.1 1.8 2 0 0 2 2 2 1 Cobalamin synthesis protein cobW C-terminal domain AAA_22 PF13401.6 AHV93658.1 - 0.028 14.7 0.0 0.076 13.3 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 AHV93658.1 - 0.045 13.9 0.0 0.22 11.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain TsaE PF02367.17 AHV93658.1 - 0.058 13.4 0.1 0.12 12.3 0.1 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE SRP54 PF00448.22 AHV93658.1 - 0.063 12.9 0.0 0.41 10.3 0.0 2.0 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_29 PF13555.6 AHV93658.1 - 0.16 11.7 0.1 0.35 10.6 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain FAD_binding_2 PF00890.24 AHV93659.1 - 3.6e-08 32.9 0.6 3.6e-08 32.9 0.6 1.2 1 0 0 1 1 1 1 FAD binding domain DUF488 PF04343.13 AHV93660.1 - 5e-24 85.2 0.1 5.8e-24 85.0 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function, DUF488 MFS_1 PF07690.16 AHV93661.1 - 1.2e-10 40.9 23.8 1.2e-10 40.9 23.8 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 AHV93661.1 - 1.2e-05 24.4 17.5 0.0016 17.4 8.6 2.4 1 1 1 2 2 2 2 Sugar (and other) transporter Haem_degrading PF03928.14 AHV93662.1 - 3e-31 107.9 3.2 3.4e-31 107.8 3.2 1.0 1 0 0 1 1 1 1 Haem-degrading GAF_2 PF13185.6 AHV93662.1 - 0.0098 16.2 1.0 0.021 15.1 1.0 1.5 1 1 0 1 1 1 1 GAF domain CBS PF00571.28 AHV93662.1 - 0.015 15.8 0.2 5.3 7.6 0.0 2.3 2 0 0 2 2 2 0 CBS domain Diacid_rec PF05651.13 AHV93662.1 - 0.1 12.3 0.2 0.18 11.4 0.1 1.5 2 0 0 2 2 2 0 Putative sugar diacid recognition 2-Hacid_dh_C PF02826.19 AHV93663.1 - 2.6e-54 183.3 0.0 4.7e-54 182.4 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 AHV93663.1 - 1.5e-38 131.5 0.0 2e-38 131.1 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 AHV93663.1 - 1.4e-07 31.8 0.5 3.7e-07 30.5 0.2 1.8 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase AdoHcyase_NAD PF00670.21 AHV93663.1 - 1.8e-05 24.8 0.1 4.8e-05 23.5 0.1 1.6 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ACT PF01842.25 AHV93663.1 - 0.0013 18.5 0.1 0.0064 16.3 0.1 2.2 2 0 0 2 2 2 1 ACT domain AlaDh_PNT_C PF01262.21 AHV93663.1 - 0.0026 17.1 0.8 0.024 13.9 0.8 2.1 1 1 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.18 AHV93663.1 - 0.014 15.3 0.1 0.025 14.4 0.1 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IlvN PF07991.12 AHV93663.1 - 0.014 14.9 0.1 0.057 13.0 0.1 1.9 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain Fucose_iso_N1 PF07881.12 AHV93663.1 - 0.019 14.9 0.0 0.11 12.3 0.0 2.1 2 0 0 2 2 2 0 L-fucose isomerase, first N-terminal domain XdhC_C PF13478.6 AHV93663.1 - 0.025 15.1 0.1 0.25 11.9 0.0 2.3 2 0 0 2 2 2 0 XdhC Rossmann domain TctA PF01970.16 AHV93664.1 - 1.1e-133 445.9 40.6 1.3e-133 445.7 40.6 1.1 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family AraC_binding PF02311.19 AHV93665.1 - 0.011 15.6 0.0 0.013 15.4 0.0 1.1 1 0 0 1 1 1 0 AraC-like ligand binding domain Cupin_2 PF07883.11 AHV93665.1 - 0.1 12.3 0.0 0.13 12.0 0.0 1.1 1 0 0 1 1 1 0 Cupin domain Lip_prot_lig_C PF10437.9 AHV93666.1 - 1e-05 25.4 0.0 1.2e-05 25.2 0.0 1.1 1 0 0 1 1 1 1 Bacterial lipoate protein ligase C-terminus ELFV_dehydrog PF00208.21 AHV93668.1 - 1.9e-84 283.2 0.1 2.4e-84 282.9 0.1 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 AHV93668.1 - 7.7e-50 168.1 0.0 1.4e-49 167.3 0.0 1.4 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain NAD_binding_7 PF13241.6 AHV93668.1 - 0.12 12.8 0.0 0.21 12.0 0.0 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding BPD_transp_2 PF02653.16 AHV93669.1 - 1.5e-24 86.6 22.6 1.8e-24 86.3 22.6 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component DUF4750 PF15938.5 AHV93669.1 - 0.66 9.7 0.0 0.66 9.7 0.0 3.2 4 0 0 4 4 4 0 Domain of unknown function (DUF4750) DUF1232 PF06803.12 AHV93671.1 - 4.1e-15 55.3 2.2 6.2e-15 54.7 2.2 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1232) rve_3 PF13683.6 AHV93672.1 - 1.4e-31 108.0 0.1 4.5e-31 106.4 0.0 1.9 2 0 0 2 2 2 1 Integrase core domain rve PF00665.26 AHV93672.1 - 4.5e-25 88.2 0.0 1.1e-23 83.7 0.0 2.2 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 AHV93672.1 - 8.3e-12 45.1 8.6 1.7e-11 44.1 8.6 1.5 1 0 0 1 1 1 1 HTH-like domain rve_2 PF13333.6 AHV93672.1 - 5.8e-07 29.6 0.0 1.3e-06 28.5 0.0 1.6 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AHV93672.1 - 0.0004 20.6 0.0 0.00091 19.5 0.0 1.6 1 1 1 2 2 2 1 DDE domain Rhomboid_SP PF12595.8 AHV93672.1 - 0.058 12.8 0.1 2.1 7.7 0.0 2.3 1 1 0 2 2 2 0 Rhomboid serine protease DUF1780 PF08682.10 AHV93672.1 - 0.13 11.9 1.0 1.6 8.3 0.3 2.2 2 0 0 2 2 2 0 Putative endonuclease, protein of unknown function (DUF1780) TadE PF07811.12 AHV93673.1 - 5.4e-10 39.4 3.5 5.4e-10 39.4 3.5 2.0 2 0 0 2 2 2 1 TadE-like protein Tad PF13400.6 AHV93673.1 - 0.0087 16.4 3.9 0.0087 16.4 3.9 2.3 2 0 0 2 2 2 1 Putative Flp pilus-assembly TadE/G-like HemX PF04375.14 AHV93673.1 - 0.044 13.1 0.6 0.05 12.9 0.6 1.1 1 0 0 1 1 1 0 HemX, putative uroporphyrinogen-III C-methyltransferase GAPT PF11770.8 AHV93673.1 - 0.092 12.6 0.0 0.11 12.3 0.0 1.2 1 0 0 1 1 1 0 GRB2-binding adapter (GAPT) PTA_PTB PF01515.19 AHV93674.1 - 1.5e-92 310.3 0.0 2e-92 309.9 0.0 1.2 1 0 0 1 1 1 1 Phosphate acetyl/butaryl transferase malic PF00390.19 AHV93674.1 - 4.2e-28 98.4 0.0 1e-25 90.6 0.0 2.6 1 1 0 1 1 1 1 Malic enzyme, N-terminal domain Malic_M PF03949.15 AHV93674.1 - 1.4e-19 70.4 1.3 4.2e-19 68.8 1.3 1.7 1 1 0 1 1 1 1 Malic enzyme, NAD binding domain Malate_DH PF12434.8 AHV93674.1 - 0.02 14.9 3.7 0.025 14.6 1.4 2.2 2 0 0 2 2 2 0 Malate dehydrogenase enzyme Flavin_Reduct PF01613.18 AHV93675.1 - 1.1e-12 48.3 0.0 1.4e-12 47.9 0.0 1.2 1 0 0 1 1 1 1 Flavin reductase like domain DEAD PF00270.29 AHV93676.1 - 9.1e-48 162.3 0.1 3.5e-47 160.4 0.0 1.8 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 AHV93676.1 - 4.2e-29 101.1 0.0 8e-28 97.0 0.2 2.6 3 0 0 3 3 3 1 Helicase conserved C-terminal domain Fibrinogen_BP PF08017.11 AHV93676.1 - 4.4e-13 48.4 9.9 6.4e-13 47.9 9.9 1.1 1 0 0 1 1 1 1 Fibrinogen binding protein AAA_19 PF13245.6 AHV93676.1 - 1.6e-06 28.5 1.1 0.0037 17.6 0.1 2.4 1 1 0 2 2 2 2 AAA domain ResIII PF04851.15 AHV93676.1 - 0.00093 19.2 0.0 0.0016 18.4 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit UvrD-helicase PF00580.21 AHV93676.1 - 0.12 11.9 0.5 11 5.4 0.1 2.1 2 0 0 2 2 2 0 UvrD/REP helicase N-terminal domain CMS1 PF14617.6 AHV93676.1 - 0.13 11.5 0.1 0.29 10.4 0.1 1.6 1 0 0 1 1 1 0 U3-containing 90S pre-ribosomal complex subunit DHH PF01368.20 AHV93677.1 - 6.6e-09 35.9 0.0 1.2e-08 35.1 0.0 1.5 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.19 AHV93677.1 - 0.006 17.0 0.0 0.014 15.8 0.0 1.6 1 0 0 1 1 1 1 DHHA1 domain bMG1 PF17970.1 AHV93677.1 - 0.095 12.8 0.0 0.2 11.7 0.0 1.6 1 0 0 1 1 1 0 Bacterial Alpha-2-macroglobulin MG1 domain Amidohydro_1 PF01979.20 AHV93678.1 - 1.1e-22 80.8 0.0 1.6e-22 80.3 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 AHV93678.1 - 2.2e-05 24.1 1.3 9.2e-05 22.1 0.9 2.4 1 1 0 1 1 1 1 Amidohydrolase family DSBA PF01323.20 AHV93679.1 - 3.5e-18 66.1 2.3 1.9e-15 57.2 2.3 2.1 1 1 0 1 1 1 1 DSBA-like thioredoxin domain Thioredoxin_4 PF13462.6 AHV93679.1 - 1.7e-10 41.3 0.0 2.7e-10 40.7 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin Thioredoxin PF00085.20 AHV93679.1 - 1.1e-06 28.6 0.2 7.1e-05 22.7 0.1 2.2 2 0 0 2 2 2 1 Thioredoxin Thioredoxin_2 PF13098.6 AHV93679.1 - 0.0032 17.9 0.7 0.052 14.0 0.7 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.6 AHV93679.1 - 0.015 15.6 0.0 0.9 9.9 0.0 2.2 2 0 0 2 2 2 0 Thioredoxin-like Thioredoxin_5 PF13743.6 AHV93679.1 - 0.046 13.4 0.0 0.62 9.7 0.0 2.0 2 0 0 2 2 2 0 Thioredoxin DUF953 PF06110.11 AHV93679.1 - 0.079 12.6 0.1 0.13 11.8 0.1 1.3 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF953) Thioredoxin_3 PF13192.6 AHV93679.1 - 0.15 12.2 0.0 16 5.6 0.0 2.3 2 0 0 2 2 2 0 Thioredoxin domain Porin_4 PF13609.6 AHV93680.1 - 3.6e-56 191.2 30.1 4.6e-56 190.8 30.1 1.0 1 0 0 1 1 1 1 Gram-negative porin Porin_1 PF00267.21 AHV93680.1 - 6.8e-19 68.5 14.6 1.5e-18 67.3 14.6 1.5 1 1 0 1 1 1 1 Gram-negative porin AsnC_trans_reg PF01037.21 AHV93681.1 - 1.8e-20 72.6 0.0 2.6e-20 72.2 0.0 1.2 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 AHV93681.1 - 1.2e-17 63.2 0.6 1.9e-17 62.5 0.6 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 AHV93681.1 - 3.5e-14 52.3 2.0 5.5e-14 51.7 2.0 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_Crp_2 PF13545.6 AHV93681.1 - 0.00018 21.4 0.1 0.00062 19.7 0.1 1.8 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_IclR PF09339.10 AHV93681.1 - 0.0002 21.1 0.3 0.00041 20.1 0.3 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.12 AHV93681.1 - 0.00032 20.6 0.0 0.00054 19.9 0.0 1.3 1 0 0 1 1 1 1 HTH domain MarR PF01047.22 AHV93681.1 - 0.00036 20.4 0.1 0.00082 19.2 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 AHV93681.1 - 0.0016 18.5 0.6 0.0034 17.4 0.5 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_CodY PF08222.11 AHV93681.1 - 0.0026 17.3 0.0 0.0046 16.5 0.0 1.4 1 0 0 1 1 1 1 CodY helix-turn-helix domain HTH_5 PF01022.20 AHV93681.1 - 0.0037 17.1 0.6 0.0076 16.1 0.3 1.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 AHV93681.1 - 0.0097 15.8 0.1 0.017 15.0 0.1 1.3 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.20 AHV93681.1 - 0.089 13.2 0.0 0.18 12.2 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator HTH_DeoR PF08220.12 AHV93681.1 - 0.1 12.3 0.0 0.29 10.9 0.0 1.7 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain DDE_Tnp_ISL3 PF01610.17 AHV93683.1 - 5.8e-39 134.2 1.8 1.5e-22 80.5 0.2 2.7 2 1 1 3 3 3 2 Transposase HTH_Tnp_ISL3 PF13542.6 AHV93683.1 - 1e-11 44.0 0.1 2.7e-11 42.7 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV93683.1 - 4.5e-09 36.8 11.2 8.5e-09 35.9 11.2 1.5 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV93683.1 - 0.0042 17.1 0.2 0.012 15.6 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain NOB1_Zn_bind PF08772.11 AHV93683.1 - 0.011 15.9 0.2 0.95 9.7 0.0 2.5 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like SLT_L PF14718.6 AHV93683.1 - 0.012 15.7 1.5 0.012 15.7 1.5 1.8 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain zf-IS66 PF13005.7 AHV93683.1 - 3.7 8.0 8.8 2.7 8.5 6.6 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Exo_endo_phos PF03372.23 AHV93684.1 - 6.4e-18 65.1 0.2 8.3e-18 64.8 0.2 1.1 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family AbiEi_3 PF11459.8 AHV93684.1 - 0.076 12.7 0.0 0.12 12.1 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator, AbiEi antitoxin, Type IV TA system Exo_endo_phos_2 PF14529.6 AHV93684.1 - 0.15 11.9 0.0 0.34 10.8 0.0 1.6 1 1 0 1 1 1 0 Endonuclease-reverse transcriptase ATP-grasp PF02222.22 AHV93685.1 - 1e-55 187.9 0.0 2.1e-55 186.9 0.0 1.5 2 0 0 2 2 2 1 ATP-grasp domain CPSase_L_D2 PF02786.17 AHV93685.1 - 3.3e-06 26.8 0.0 6.5e-06 25.8 0.0 1.4 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Dala_Dala_lig_C PF07478.13 AHV93685.1 - 2.5e-05 23.9 0.0 6.7e-05 22.5 0.0 1.7 2 0 0 2 2 2 1 D-ala D-ala ligase C-terminus ATP-grasp_3 PF02655.14 AHV93685.1 - 6.4e-05 23.1 0.0 0.00013 22.0 0.0 1.5 1 1 0 1 1 1 1 ATP-grasp domain Epimerase PF01370.21 AHV93685.1 - 0.0002 20.9 0.0 0.00043 19.8 0.0 1.5 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GARS_A PF01071.19 AHV93685.1 - 0.0017 18.2 0.0 0.003 17.3 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain 2-Hacid_dh_C PF02826.19 AHV93685.1 - 0.0045 16.4 0.0 0.0077 15.6 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ATP-grasp_5 PF13549.6 AHV93685.1 - 0.011 15.2 0.0 0.024 14.1 0.0 1.5 1 0 0 1 1 1 0 ATP-grasp domain RmlD_sub_bind PF04321.17 AHV93685.1 - 0.014 14.5 0.2 0.026 13.6 0.2 1.5 1 1 0 1 1 1 0 RmlD substrate binding domain ATP-grasp_4 PF13535.6 AHV93685.1 - 0.059 13.0 0.0 0.33 10.5 0.0 2.1 2 0 0 2 2 2 0 ATP-grasp domain FCD PF07729.12 AHV93687.1 - 1.2e-25 90.4 0.4 1.8e-25 89.8 0.4 1.3 1 0 0 1 1 1 1 FCD domain GntR PF00392.21 AHV93687.1 - 1.3e-16 60.0 0.4 3e-16 58.8 0.4 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_CodY PF08222.11 AHV93687.1 - 0.00065 19.2 0.1 0.0012 18.3 0.1 1.5 1 0 0 1 1 1 1 CodY helix-turn-helix domain HTH_Crp_2 PF13545.6 AHV93687.1 - 0.0051 16.8 0.5 0.013 15.5 0.1 1.9 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_24 PF13412.6 AHV93687.1 - 0.032 13.8 0.3 0.1 12.1 0.1 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding LexA_DNA_bind PF01726.16 AHV93687.1 - 0.034 13.9 0.1 0.19 11.5 0.1 2.2 2 0 0 2 2 2 0 LexA DNA binding domain TrmB PF01978.19 AHV93687.1 - 0.11 12.4 0.0 0.22 11.4 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF2239 PF09998.9 AHV93688.1 - 1.5e-24 86.8 0.1 1.6e-24 86.7 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2239) Fer4_5 PF12801.7 AHV93689.1 - 9.5e-14 51.1 13.1 1e-10 41.4 8.6 4.3 4 1 1 5 5 5 2 4Fe-4S binding domain CoA_transf_3 PF02515.17 AHV93690.1 - 7.5e-136 453.1 0.1 8.5e-136 452.9 0.1 1.0 1 0 0 1 1 1 1 CoA-transferase family III TctC PF03401.14 AHV93691.1 - 1.8e-85 286.4 0.1 2.1e-85 286.1 0.1 1.1 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor BCA_ABC_TP_C PF12399.8 AHV93691.1 - 0.27 11.2 0.8 2.5 8.1 0.1 2.4 2 0 0 2 2 2 0 Branched-chain amino acid ATP-binding cassette transporter Response_reg PF00072.24 AHV93692.1 - 1.1e-21 77.0 0.0 1.9e-21 76.3 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain GerE PF00196.19 AHV93692.1 - 4.2e-19 67.8 0.0 7.4e-19 67.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_ECF PF07638.11 AHV93692.1 - 5.7e-06 26.3 0.2 7.6e-06 25.9 0.2 1.2 1 0 0 1 1 1 1 ECF sigma factor Sigma70_r4_2 PF08281.12 AHV93692.1 - 8.1e-06 25.4 0.2 1.9e-05 24.2 0.2 1.7 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.6 AHV93692.1 - 0.0011 18.8 0.1 0.0031 17.3 0.1 2.0 1 1 0 1 1 1 1 Homeodomain-like domain DUF3071 PF11268.8 AHV93692.1 - 0.002 18.2 0.3 0.0026 17.8 0.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3071) HTH_Tnp_ISL3 PF13542.6 AHV93692.1 - 0.003 16.9 0.2 0.0097 15.3 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 HTH_28 PF13518.6 AHV93692.1 - 0.011 15.9 0.1 0.038 14.1 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain Sigma70_r4 PF04545.16 AHV93692.1 - 0.029 13.9 0.2 0.057 12.9 0.2 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_7 PF02796.15 AHV93692.1 - 0.15 12.1 0.0 0.3 11.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase AbiEi_3 PF11459.8 AHV93693.1 - 3.3e-34 117.9 0.0 4.1e-34 117.6 0.0 1.1 1 0 0 1 1 1 1 Transcriptional regulator, AbiEi antitoxin, Type IV TA system AbiEi_3_N PF17194.4 AHV93693.1 - 0.00099 19.1 0.6 0.0024 17.8 0.2 1.9 2 0 0 2 2 2 1 Transcriptional regulator, AbiEi antitoxin N-terminal domain Pur_DNA_glyco PF02245.16 AHV93694.1 - 0.0034 16.9 0.0 0.0041 16.6 0.0 1.1 1 0 0 1 1 1 1 Methylpurine-DNA glycosylase (MPG) APH PF01636.23 AHV93695.1 - 0.006 16.5 0.1 0.0063 16.5 0.1 1.0 1 0 0 1 1 1 1 Phosphotransferase enzyme family MerR-DNA-bind PF09278.11 AHV93696.1 - 3.7e-19 69.0 4.1 5.8e-19 68.4 4.1 1.3 1 0 0 1 1 1 1 MerR, DNA binding MerR_1 PF13411.6 AHV93696.1 - 3.3e-18 65.5 0.2 6e-18 64.7 0.2 1.4 1 0 0 1 1 1 1 MerR HTH family regulatory protein MerR PF00376.23 AHV93696.1 - 5.4e-15 54.9 0.3 1.3e-14 53.6 0.3 1.7 1 0 0 1 1 1 1 MerR family regulatory protein TPR_MLP1_2 PF07926.12 AHV93696.1 - 0.035 14.2 0.2 0.095 12.8 0.1 1.8 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein DUF4315 PF14193.6 AHV93696.1 - 0.048 13.7 0.1 0.35 10.9 0.0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4315) rve PF00665.26 AHV93697.1 - 2.9e-32 111.3 0.7 4.3e-32 110.8 0.1 1.6 2 0 0 2 2 1 1 Integrase core domain LZ_Tnp_IS481 PF13011.6 AHV93697.1 - 7.7e-22 77.6 2.7 1.1e-19 70.7 0.4 2.6 1 1 1 2 2 2 1 leucine-zipper of insertion element IS481 rve_3 PF13683.6 AHV93697.1 - 5e-19 67.8 2.7 1.2e-18 66.6 2.7 1.7 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.6 AHV93697.1 - 6.1e-17 60.9 4.4 1.2e-07 31.3 0.1 2.7 2 0 0 2 2 2 2 Homeodomain-like domain HTH_28 PF13518.6 AHV93697.1 - 1.5e-15 57.1 6.5 5.9e-11 42.3 0.1 3.4 4 0 0 4 4 3 2 Helix-turn-helix domain HTH_29 PF13551.6 AHV93697.1 - 9.8e-12 44.7 0.6 2.6e-06 27.4 0.0 2.6 2 0 0 2 2 2 2 Winged helix-turn helix HTH_32 PF13565.6 AHV93697.1 - 9.4e-11 42.2 0.7 9.4e-11 42.2 0.7 2.4 2 1 0 2 2 2 1 Homeodomain-like domain HTH_38 PF13936.6 AHV93697.1 - 1.5e-06 27.9 0.6 5.1e-06 26.1 0.5 2.1 2 0 0 2 2 1 1 Helix-turn-helix domain MarR_2 PF12802.7 AHV93697.1 - 8e-06 25.6 3.1 9.5e-05 22.2 1.2 2.6 2 0 0 2 2 2 1 MarR family HTH_31 PF13560.6 AHV93697.1 - 1.4e-05 25.4 1.7 0.00059 20.1 0.4 3.2 3 0 0 3 3 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 AHV93697.1 - 3e-05 23.6 0.1 0.0064 16.1 0.3 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 AHV93697.1 - 4.6e-05 22.9 0.1 0.00056 19.4 0.2 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 YdaS_antitoxin PF15943.5 AHV93697.1 - 0.00022 21.0 0.2 0.24 11.3 0.0 2.8 2 0 0 2 2 2 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_Tnp_ISL3 PF13542.6 AHV93697.1 - 0.00023 20.5 8.5 0.002 17.5 0.6 3.9 4 0 0 4 4 3 1 Helix-turn-helix domain of transposase family ISL3 HTH_24 PF13412.6 AHV93697.1 - 0.00028 20.4 0.2 0.0021 17.6 0.3 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_3 PF01381.22 AHV93697.1 - 0.00032 20.7 0.7 0.013 15.5 0.3 2.5 2 0 0 2 2 2 1 Helix-turn-helix HTH_Crp_2 PF13545.6 AHV93697.1 - 0.0004 20.3 0.3 0.0027 17.6 0.2 2.3 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain Trp_repressor PF01371.19 AHV93697.1 - 0.00081 19.5 0.2 0.006 16.7 0.1 2.2 2 0 0 2 2 2 1 Trp repressor protein CENP-B_N PF04218.13 AHV93697.1 - 0.0016 18.0 0.0 1.6 8.5 0.1 2.3 2 0 0 2 2 2 1 CENP-B N-terminal DNA-binding domain LacI PF00356.21 AHV93697.1 - 0.0017 18.1 1.8 0.0046 16.7 0.7 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family Fe_dep_repress PF01325.19 AHV93697.1 - 0.002 18.3 0.0 0.034 14.4 0.1 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.20 AHV93697.1 - 0.0023 17.8 0.0 0.93 9.4 0.0 2.5 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 AHV93697.1 - 0.0025 17.6 1.3 0.035 13.9 0.7 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_psq PF05225.16 AHV93697.1 - 0.0025 17.5 0.7 2.3 8.0 0.4 2.9 3 0 0 3 3 3 1 helix-turn-helix, Psq domain HTH_11 PF08279.12 AHV93697.1 - 0.0026 17.7 0.4 0.015 15.3 0.5 2.2 2 0 0 2 2 2 1 HTH domain SpoIIID PF12116.8 AHV93697.1 - 0.0026 17.8 0.0 1.1 9.4 0.0 2.4 2 0 0 2 2 2 1 Stage III sporulation protein D HTH_AsnC-type PF13404.6 AHV93697.1 - 0.0036 17.1 2.7 0.045 13.6 1.1 2.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain RepB PF07506.11 AHV93697.1 - 0.0042 17.2 0.1 0.55 10.3 0.1 2.3 1 1 1 2 2 2 1 RepB plasmid partitioning protein HTH_17 PF12728.7 AHV93697.1 - 0.0043 17.2 0.7 6.1 7.1 0.0 3.3 3 1 0 3 3 3 0 Helix-turn-helix domain HTH_Tnp_1 PF01527.20 AHV93697.1 - 0.005 17.1 0.5 0.11 12.8 0.0 2.7 1 1 1 2 2 2 1 Transposase GntR PF00392.21 AHV93697.1 - 0.0053 16.4 0.8 0.5 10.1 0.3 2.5 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_10 PF04967.12 AHV93697.1 - 0.0077 16.0 0.1 0.049 13.4 0.2 2.2 2 0 0 2 2 2 1 HTH DNA binding domain HTH_35 PF13693.6 AHV93697.1 - 0.0093 16.0 1.5 0.073 13.1 0.6 2.7 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding UPF0175 PF03683.13 AHV93697.1 - 0.014 15.1 0.4 0.1 12.3 0.1 2.4 2 1 0 2 2 2 0 Uncharacterised protein family (UPF0175) HTH_30 PF13556.6 AHV93697.1 - 0.015 15.1 0.1 2 8.3 0.0 2.6 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain HTH_37 PF13744.6 AHV93697.1 - 0.016 15.2 0.1 0.13 12.3 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Tnp_4 PF13613.6 AHV93697.1 - 0.016 14.9 0.1 0.067 12.9 0.0 2.0 2 0 0 2 2 1 0 Helix-turn-helix of DDE superfamily endonuclease HTH_36 PF13730.6 AHV93697.1 - 0.02 14.8 0.1 0.58 10.2 0.0 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain KORA PF16509.5 AHV93697.1 - 0.034 14.4 0.1 3.6 8.0 0.0 3.0 3 0 0 3 3 3 0 TrfB plasmid transcriptional repressor MarR PF01047.22 AHV93697.1 - 0.045 13.7 0.1 0.14 12.1 0.1 1.8 2 0 0 2 2 1 0 MarR family DDE_Tnp_IS240 PF13610.6 AHV93697.1 - 0.048 13.9 0.1 0.071 13.3 0.1 1.3 1 0 0 1 1 1 0 DDE domain Crp PF00325.20 AHV93697.1 - 0.05 13.3 3.2 0.062 13.0 0.5 2.5 3 0 0 3 3 3 0 Bacterial regulatory proteins, crp family P22_Cro PF14549.6 AHV93697.1 - 0.051 13.4 1.6 9.6 6.1 0.1 2.5 2 0 0 2 2 2 0 DNA-binding transcriptional regulator Cro DUF746 PF05344.11 AHV93697.1 - 0.085 12.7 0.1 0.98 9.3 0.0 2.3 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) HTH_1 PF00126.27 AHV93697.1 - 0.1 12.5 2.8 4.7 7.2 0.5 2.6 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_26 PF13443.6 AHV93697.1 - 0.17 12.3 0.0 3.6 8.1 0.1 2.8 3 0 0 3 3 3 0 Cro/C1-type HTH DNA-binding domain HTH_8 PF02954.19 AHV93697.1 - 0.19 11.5 0.9 14 5.5 0.7 2.7 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family HTH_Tnp_Tc3_2 PF01498.18 AHV93697.1 - 0.27 11.5 2.6 0.47 10.7 0.1 2.6 3 0 0 3 3 1 0 Transposase HTH_33 PF13592.6 AHV93697.1 - 0.56 9.9 3.1 2.9 7.6 0.1 3.4 4 0 0 4 4 2 0 Winged helix-turn helix MerR PF00376.23 AHV93697.1 - 0.72 9.7 6.8 3.2 7.6 0.0 3.6 4 0 0 4 4 2 0 MerR family regulatory protein His_Phos_1 PF00300.22 AHV93698.1 - 1.9e-59 200.7 0.9 2.1e-59 200.5 0.9 1.0 1 0 0 1 1 1 1 Histidine phosphatase superfamily (branch 1) ECH_1 PF00378.20 AHV93699.1 - 4.2e-54 183.5 0.0 4.7e-54 183.3 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 AHV93699.1 - 1.3e-27 97.2 0.4 9.7e-27 94.3 0.1 1.8 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase FAD_binding_2 PF00890.24 AHV93700.1 - 0.012 14.7 0.3 0.015 14.4 0.3 1.1 1 0 0 1 1 1 0 FAD binding domain HI0933_like PF03486.14 AHV93700.1 - 0.11 11.1 0.0 0.17 10.6 0.0 1.3 1 1 0 1 1 1 0 HI0933-like protein rve PF00665.26 AHV93701.1 - 1.5e-23 83.3 0.3 3.8e-23 81.9 0.0 1.7 2 0 0 2 2 2 1 Integrase core domain rve_3 PF13683.6 AHV93701.1 - 2e-19 69.1 3.7 2.2e-19 69.0 2.7 1.6 2 0 0 2 2 2 1 Integrase core domain PG_binding_2 PF08823.11 AHV93701.1 - 0.026 14.8 0.0 0.044 14.1 0.0 1.4 1 0 0 1 1 1 0 Putative peptidoglycan binding domain zf-HC2 PF13490.6 AHV93702.1 - 0.011 15.9 3.0 0.1 12.9 0.1 3.2 4 0 0 4 4 4 0 Putative zinc-finger Ni_hydr_CYTB PF01292.20 AHV93702.1 - 0.042 13.4 0.4 0.081 12.5 0.4 1.5 1 0 0 1 1 1 0 Prokaryotic cytochrome b561 STN PF07660.14 AHV93703.1 - 4.2e-11 42.4 0.0 8.5e-08 31.9 0.0 2.5 1 1 1 2 2 2 2 Secretin and TonB N terminus short domain Plug PF07715.15 AHV93703.1 - 0.00064 20.3 0.0 0.0011 19.5 0.0 1.4 1 0 0 1 1 1 1 TonB-dependent Receptor Plug Domain adh_short_C2 PF13561.6 AHV93704.1 - 2e-56 191.2 6.6 3.7e-56 190.3 6.6 1.3 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 AHV93704.1 - 1.7e-54 184.3 3.3 2.6e-54 183.7 3.3 1.2 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 AHV93704.1 - 3.9e-11 43.2 3.9 6.3e-11 42.5 3.9 1.2 1 0 0 1 1 1 1 KR domain CbiG_C PF01890.16 AHV93704.1 - 0.057 14.0 0.6 0.18 12.3 0.1 2.1 1 1 1 2 2 2 0 Cobalamin synthesis G C-terminus AdoHcyase_NAD PF00670.21 AHV93704.1 - 7.3 6.6 6.5 1 9.4 1.1 2.1 2 1 1 3 3 3 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Plug PF07715.15 AHV93705.1 - 5.5e-17 62.3 0.0 9.3e-17 61.6 0.0 1.4 1 0 0 1 1 1 1 TonB-dependent Receptor Plug Domain HCV_NS5a_1a PF08300.13 AHV93705.1 - 0.046 13.8 1.6 0.095 12.8 1.6 1.5 1 0 0 1 1 1 0 Hepatitis C virus non-structural 5a zinc finger domain Response_reg PF00072.24 AHV93706.1 - 2.5e-28 98.5 0.1 3.5e-28 98.0 0.1 1.2 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 AHV93706.1 - 3.8e-28 97.4 0.0 9.9e-28 96.0 0.0 1.7 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal Glyco_transf_4 PF13439.6 AHV93706.1 - 0.049 13.6 0.1 6.9 6.6 0.0 2.3 2 0 0 2 2 2 0 Glycosyltransferase Family 4 HTH_11 PF08279.12 AHV93706.1 - 0.084 12.8 0.0 0.25 11.3 0.0 1.8 2 0 0 2 2 2 0 HTH domain STAS PF01740.21 AHV93707.1 - 6.4e-06 25.8 0.0 8.3e-06 25.4 0.0 1.1 1 0 0 1 1 1 1 STAS domain FDX-ACB PF03147.14 AHV93709.1 - 1.2e-15 57.7 0.0 1.4e-15 57.4 0.0 1.0 1 0 0 1 1 1 1 Ferredoxin-fold anticodon binding domain Acyl-CoA_dh_1 PF00441.24 AHV93710.1 - 9.9e-44 149.2 11.3 1.9e-43 148.2 11.3 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 AHV93710.1 - 2.5e-23 82.1 0.0 4.9e-23 81.2 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 AHV93710.1 - 1e-22 80.8 13.9 2.3e-22 79.7 13.9 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 AHV93710.1 - 2.5e-12 47.4 0.3 9.7e-12 45.5 0.0 2.0 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain AsmA PF05170.14 AHV93711.1 - 1.3e-96 324.9 0.0 2.2e-96 324.0 0.0 1.4 1 1 0 1 1 1 1 AsmA family AsmA_2 PF13502.6 AHV93711.1 - 5.6e-19 68.6 6.2 7e-19 68.3 4.5 2.0 2 0 0 2 2 2 1 AsmA-like C-terminal region DUF748 PF05359.11 AHV93711.1 - 0.008 16.4 1.0 13 5.9 0.0 4.0 3 2 1 4 4 4 1 Domain of Unknown Function (DUF748) PseudoU_synth_1 PF01416.20 AHV93712.1 - 1.4e-30 105.9 0.0 2.4e-29 102.0 0.0 2.0 2 0 0 2 2 2 1 tRNA pseudouridine synthase PD40 PF07676.12 AHV93712.1 - 0.23 11.4 0.6 0.5 10.4 0.0 1.8 2 0 0 2 2 2 0 WD40-like Beta Propeller Repeat TctC PF03401.14 AHV93713.1 - 5.7e-50 169.9 0.0 6.6e-50 169.7 0.0 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor PTS_EIIA_1 PF00358.20 AHV93713.1 - 0.16 11.8 0.1 0.25 11.1 0.1 1.3 1 0 0 1 1 1 0 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 Mem_trans PF03547.18 AHV93714.1 - 0.0096 14.4 0.4 0.0096 14.4 0.4 1.0 1 0 0 1 1 1 1 Membrane transport protein Ni_hydr_CYTB PF01292.20 AHV93715.1 - 1.3e-17 64.0 15.8 2.9e-17 62.9 15.8 1.5 1 1 0 1 1 1 1 Prokaryotic cytochrome b561 Phage_Coat_Gp8 PF05371.12 AHV93715.1 - 0.47 10.3 2.1 0.37 10.6 0.2 1.8 2 0 0 2 2 2 0 Phage major coat protein, Gp8 AMNp_N PF10423.9 AHV93716.1 - 5.7e-57 191.7 0.0 2.5e-56 189.7 0.0 1.9 2 0 0 2 2 2 1 Bacterial AMP nucleoside phosphorylase N-terminus PNP_UDP_1 PF01048.20 AHV93716.1 - 5.1e-14 52.1 0.1 1.2e-13 50.9 0.0 1.6 2 0 0 2 2 2 1 Phosphorylase superfamily TonB_C PF03544.14 AHV93717.1 - 3.4e-22 78.7 0.0 6.8e-22 77.7 0.0 1.5 1 0 0 1 1 1 1 Gram-negative bacterial TonB protein C-terminal TonB_2 PF13103.6 AHV93717.1 - 2e-05 24.7 0.0 2e-05 24.7 0.0 3.3 4 0 0 4 4 4 1 TonB C terminal TonB_N PF16031.5 AHV93717.1 - 0.21 12.1 76.7 2e+03 -0.8 76.7 2.3 1 1 0 1 1 1 0 TonB polyproline region BPD_transp_1 PF00528.22 AHV93718.1 - 4.5e-21 75.4 16.5 4.5e-21 75.4 16.5 2.3 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF3951 PF13131.6 AHV93718.1 - 0.15 12.2 0.5 0.15 12.2 0.5 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF3951) DUF3333 PF11812.8 AHV93718.1 - 0.32 11.2 0.6 0.71 10.1 0.6 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3333) LolB PF03550.14 AHV93719.1 - 3.7e-36 124.5 0.0 4.4e-36 124.2 0.0 1.1 1 0 0 1 1 1 1 Outer membrane lipoprotein LolB Peptidase_M24 PF00557.24 AHV93720.1 - 4.8e-44 150.5 0.1 7.6e-44 149.9 0.1 1.3 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N_2 PF16189.5 AHV93720.1 - 4.1e-39 134.3 0.0 9.4e-37 126.6 0.0 2.9 3 0 0 3 3 3 1 Creatinase/Prolidase N-terminal domain Creatinase_N PF01321.18 AHV93720.1 - 6.5e-28 98.0 0.0 3.4e-20 73.0 0.0 3.0 3 0 0 3 3 3 2 Creatinase/Prolidase N-terminal domain Peptidase_M24_C PF16188.5 AHV93720.1 - 3.2e-25 88.0 0.5 8.4e-25 86.6 0.1 2.0 2 0 0 2 2 2 1 C-terminal region of peptidase_M24 DUF1730 PF08331.10 AHV93720.1 - 0.066 13.1 0.0 0.23 11.4 0.0 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF1730) GTP_EFTU PF00009.27 AHV93721.1 - 1.5e-27 96.4 0.4 7.4e-27 94.1 0.5 1.8 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain SelB-wing_3 PF09107.11 AHV93721.1 - 1.3e-19 69.5 1.8 2e-19 68.9 0.3 2.2 2 0 0 2 2 2 1 Elongation factor SelB, winged helix SelB-wing_2 PF09106.11 AHV93721.1 - 2e-15 56.7 0.7 7.4e-14 51.7 0.5 3.6 3 0 0 3 3 3 1 Elongation factor SelB, winged helix GTP_EFTU_D2 PF03144.25 AHV93721.1 - 3.9e-07 30.4 0.1 1e-06 29.0 0.1 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 AHV93721.1 - 0.00089 19.3 0.0 0.0018 18.3 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase SRPRB PF09439.10 AHV93721.1 - 0.0057 16.1 0.0 0.0085 15.5 0.0 1.2 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit PP_kinase_C_1 PF17941.1 AHV93722.1 - 4.9e-74 247.4 0.1 2.6e-72 241.8 0.0 2.2 1 1 1 2 2 2 1 Polyphosphate kinase C-terminal domain 1 PP_kinase_C PF13090.6 AHV93722.1 - 7.9e-66 220.8 0.1 1.6e-64 216.6 0.0 2.2 2 0 0 2 2 2 1 Polyphosphate kinase C-terminal domain 2 PP_kinase PF02503.17 AHV93722.1 - 1.4e-58 197.8 0.0 3e-58 196.7 0.0 1.6 1 0 0 1 1 1 1 Polyphosphate kinase middle domain PP_kinase_N PF13089.6 AHV93722.1 - 1.5e-33 115.3 0.1 3.9e-33 114.0 0.0 1.8 2 0 0 2 2 2 1 Polyphosphate kinase N-terminal domain PLDc_2 PF13091.6 AHV93722.1 - 5.1e-12 45.8 0.0 3.8e-06 26.8 0.0 2.7 2 1 0 2 2 2 2 PLD-like domain rve PF00665.26 AHV93723.1 - 3.2e-25 88.6 0.1 1.1e-24 86.9 0.0 1.8 2 0 0 2 2 2 1 Integrase core domain HTH_38 PF13936.6 AHV93723.1 - 6e-08 32.3 0.7 1.7e-07 30.9 0.7 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 AHV93723.1 - 1.1e-06 28.2 0.2 1.4e-05 24.7 0.2 2.6 3 0 0 3 3 2 1 Homeodomain-like domain HTH_Tnp_Tc3_1 PF11427.8 AHV93723.1 - 1.2e-06 28.2 0.1 2.3e-06 27.3 0.1 1.4 1 0 0 1 1 1 1 Tc3 transposase HTH_11 PF08279.12 AHV93723.1 - 2.4e-05 24.2 0.1 5.1e-05 23.1 0.1 1.5 1 0 0 1 1 1 1 HTH domain NUMOD1 PF07453.13 AHV93723.1 - 2.4e-05 24.4 0.0 4.3e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 NUMOD1 domain HTH_Tnp_Tc3_2 PF01498.18 AHV93723.1 - 2.5e-05 24.4 0.1 5.9e-05 23.2 0.1 1.6 1 0 0 1 1 1 1 Transposase HTH_29 PF13551.6 AHV93723.1 - 2.7e-05 24.1 1.6 6.8e-05 22.8 0.1 2.4 2 0 0 2 2 2 1 Winged helix-turn helix TnsD PF15978.5 AHV93723.1 - 8.4e-05 21.7 0.0 0.00013 21.1 0.0 1.2 1 0 0 1 1 1 1 Tn7-like transposition protein D HTH_7 PF02796.15 AHV93723.1 - 0.00015 21.8 0.2 0.00028 20.9 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase Phage_NinH PF06322.11 AHV93723.1 - 0.00024 20.9 0.2 0.00051 19.9 0.2 1.5 1 0 0 1 1 1 1 Phage NinH protein rve_3 PF13683.6 AHV93723.1 - 0.0003 20.5 0.0 0.0013 18.5 0.0 2.1 1 1 0 1 1 1 1 Integrase core domain HTH_28 PF13518.6 AHV93723.1 - 0.00037 20.5 0.4 0.0029 17.7 0.3 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain ANT PF03374.14 AHV93723.1 - 0.00044 20.5 0.0 0.0011 19.3 0.0 1.6 1 0 0 1 1 1 1 Phage antirepressor protein KilAC domain Sigma70_r4_2 PF08281.12 AHV93723.1 - 0.00055 19.6 0.2 0.0043 16.7 0.1 2.3 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_ECF PF07638.11 AHV93723.1 - 0.00058 19.8 0.1 0.00097 19.1 0.1 1.3 1 0 0 1 1 1 1 ECF sigma factor HTH_10 PF04967.12 AHV93723.1 - 0.00071 19.3 0.0 0.0017 18.1 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain HTH_31 PF13560.6 AHV93723.1 - 0.00074 19.8 0.7 0.00074 19.8 0.7 2.8 3 1 0 3 3 2 1 Helix-turn-helix domain HTH_26 PF13443.6 AHV93723.1 - 0.0014 19.0 0.1 0.0027 18.1 0.1 1.4 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_36 PF13730.6 AHV93723.1 - 0.0019 18.1 0.0 0.0047 16.9 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_17 PF12728.7 AHV93723.1 - 0.0025 18.0 0.0 0.0067 16.6 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain MerR PF00376.23 AHV93723.1 - 0.0031 17.3 0.0 0.0076 16.0 0.0 1.7 1 0 0 1 1 1 1 MerR family regulatory protein HTH_3 PF01381.22 AHV93723.1 - 0.0043 17.1 0.1 0.01 15.9 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_8 PF02954.19 AHV93723.1 - 0.0066 16.2 0.2 0.016 15.0 0.2 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family HTH_30 PF13556.6 AHV93723.1 - 0.0069 16.2 0.0 0.015 15.1 0.0 1.6 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain HTH_DeoR PF08220.12 AHV93723.1 - 0.0094 15.7 0.0 0.026 14.3 0.0 1.7 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain MerR_1 PF13411.6 AHV93723.1 - 0.01 15.9 0.0 0.033 14.3 0.0 1.9 2 0 0 2 2 1 0 MerR HTH family regulatory protein HTH_Tnp_ISL3 PF13542.6 AHV93723.1 - 0.018 14.4 0.0 0.041 13.3 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_50 PF18024.1 AHV93723.1 - 0.018 14.6 0.1 0.04 13.5 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_IclR PF09339.10 AHV93723.1 - 0.019 14.8 0.0 0.059 13.2 0.0 1.9 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_Mga PF08280.11 AHV93723.1 - 0.031 14.3 0.0 0.073 13.1 0.0 1.5 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain DUF2089 PF09862.9 AHV93723.1 - 0.045 13.8 0.1 0.12 12.4 0.0 1.8 2 0 0 2 2 1 0 Protein of unknown function (DUF2089) HTH_24 PF13412.6 AHV93723.1 - 0.048 13.2 0.1 0.1 12.2 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_22 PF13309.6 AHV93723.1 - 0.053 13.6 0.0 0.12 12.4 0.0 1.6 1 0 0 1 1 1 0 HTH domain PmoA PF14100.6 AHV93723.1 - 0.063 12.8 0.1 0.13 11.7 0.1 1.5 1 0 0 1 1 1 0 Methane oxygenase PmoA HTH_6 PF01418.17 AHV93723.1 - 0.068 13.2 0.0 0.19 11.7 0.0 1.7 2 0 0 2 2 1 0 Helix-turn-helix domain, rpiR family HTH_19 PF12844.7 AHV93723.1 - 0.072 13.1 0.0 0.26 11.3 0.0 2.0 2 0 0 2 2 1 0 Helix-turn-helix domain GerE PF00196.19 AHV93723.1 - 0.083 12.4 0.0 0.15 11.7 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family Sigma70_r4 PF04545.16 AHV93723.1 - 0.11 12.1 0.2 0.65 9.6 0.3 2.2 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_40 PF14493.6 AHV93723.1 - 0.14 12.6 0.0 0.45 11.0 0.0 1.7 1 1 1 2 2 1 0 Helix-turn-helix domain Cupin_2 PF07883.11 AHV93724.1 - 6.6e-06 25.8 0.1 9.8e-06 25.2 0.1 1.3 1 0 0 1 1 1 1 Cupin domain DUF559 PF04480.12 AHV93724.1 - 0.047 13.5 0.0 0.057 13.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF559) Ectoine_synth PF06339.12 AHV93724.1 - 0.12 12.6 0.0 0.15 12.2 0.0 1.1 1 0 0 1 1 1 0 Ectoine synthase LysE PF01810.18 AHV93725.1 - 1.9e-16 60.1 4.3 2.2e-16 59.9 4.3 1.1 1 0 0 1 1 1 1 LysE type translocator Phage_holin_3_6 PF07332.11 AHV93725.1 - 2.9 8.0 10.7 1.1 9.3 8.2 1.5 1 1 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III PD40 PF07676.12 AHV93726.1 - 1.4e-41 139.6 14.9 5.5e-13 48.5 2.5 6.1 6 0 0 6 6 6 4 WD40-like Beta Propeller Repeat TolB_N PF04052.13 AHV93726.1 - 1e-23 83.5 0.0 2.2e-23 82.4 0.0 1.6 2 0 0 2 2 2 1 TolB amino-terminal domain DPPIV_N PF00930.21 AHV93726.1 - 8.6e-10 37.9 0.0 2.7e-05 23.1 0.0 3.3 1 1 2 3 3 3 3 Dipeptidyl peptidase IV (DPP IV) N-terminal region Pectate_lyase22 PF14583.6 AHV93726.1 - 7.4e-08 31.5 0.1 0.047 12.4 0.0 4.1 2 2 2 4 4 4 3 Oligogalacturonate lyase Gmad1 PF10647.9 AHV93726.1 - 1.6e-05 24.8 0.7 1.3 8.7 0.0 3.7 2 2 1 3 3 3 3 Lipoprotein LpqB beta-propeller domain LptE PF04390.12 AHV93726.1 - 0.048 14.4 0.1 0.14 12.9 0.1 1.9 1 1 0 1 1 1 0 Lipopolysaccharide-assembly Ge1_WD40 PF16529.5 AHV93726.1 - 0.059 12.3 0.0 5.6 5.8 0.0 3.0 2 1 0 3 3 3 0 WD40 region of Ge1, enhancer of mRNA-decapping protein Amino_oxidase PF01593.24 AHV93727.1 - 1.1e-26 94.2 2.9 2.6e-26 92.9 2.9 1.7 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 AHV93727.1 - 3.6e-13 49.5 0.5 3.6e-13 49.5 0.5 1.9 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 AHV93727.1 - 2.5e-07 30.6 3.8 8.8e-07 28.8 3.7 1.9 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 AHV93727.1 - 1.3e-06 27.9 0.4 2e-06 27.3 0.4 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 AHV93727.1 - 8.9e-06 25.0 0.8 0.00027 20.1 0.6 2.1 2 0 0 2 2 2 1 Glucose inhibited division protein A HI0933_like PF03486.14 AHV93727.1 - 5.8e-05 22.0 1.3 8.6e-05 21.4 1.3 1.2 1 0 0 1 1 1 1 HI0933-like protein FAD_binding_2 PF00890.24 AHV93727.1 - 6.9e-05 22.1 2.6 6.9e-05 22.1 2.6 1.5 2 0 0 2 2 2 1 FAD binding domain FAD_oxidored PF12831.7 AHV93727.1 - 0.00017 21.1 0.4 0.00024 20.6 0.4 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox PF00070.27 AHV93727.1 - 0.00018 22.0 0.4 0.00043 20.8 0.4 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 AHV93727.1 - 0.0023 17.2 0.2 0.0023 17.2 0.2 1.9 2 0 0 2 2 2 1 Thi4 family AlaDh_PNT_C PF01262.21 AHV93727.1 - 0.003 16.9 1.6 0.005 16.2 1.6 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Lycopene_cycl PF05834.12 AHV93727.1 - 0.017 14.2 0.2 0.017 14.2 0.2 1.5 2 0 0 2 2 2 0 Lycopene cyclase protein Pyr_redox_3 PF13738.6 AHV93727.1 - 0.04 13.2 0.5 0.06 12.6 0.5 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 AHV93727.1 - 0.052 12.8 0.4 0.085 12.1 0.4 1.3 1 0 0 1 1 1 0 FAD binding domain NAD_binding_9 PF13454.6 AHV93727.1 - 0.11 12.5 0.2 0.25 11.3 0.2 1.6 1 0 0 1 1 1 0 FAD-NAD(P)-binding UDPG_MGDP_dh_N PF03721.14 AHV93727.1 - 0.22 11.1 0.0 0.43 10.1 0.0 1.5 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UvrD_C PF13361.6 AHV93728.1 - 7e-69 232.8 0.0 4e-68 230.3 0.0 2.0 1 1 0 1 1 1 1 UvrD-like helicase C-terminal domain UvrD-helicase PF00580.21 AHV93728.1 - 1.7e-58 198.6 0.0 4.5e-58 197.2 0.0 1.7 1 1 0 1 1 1 1 UvrD/REP helicase N-terminal domain AAA_19 PF13245.6 AHV93728.1 - 2.4e-21 76.6 0.1 8.6e-21 74.8 0.0 1.9 2 0 0 2 2 2 1 AAA domain UvrD_C_2 PF13538.6 AHV93728.1 - 8.3e-12 44.7 0.1 2.9e-11 43.0 0.1 1.9 1 1 0 1 1 1 1 UvrD-like helicase C-terminal domain AAA_12 PF13087.6 AHV93728.1 - 3.1e-06 27.0 0.0 0.0023 17.6 0.0 2.7 2 1 0 3 3 3 2 AAA domain Viral_helicase1 PF01443.18 AHV93728.1 - 0.0017 18.1 0.0 0.0045 16.7 0.0 1.7 1 0 0 1 1 1 1 Viral (Superfamily 1) RNA helicase rve_3 PF13683.6 AHV93729.1 - 2.5e-15 56.0 0.2 2.7e-15 55.9 0.2 1.0 1 0 0 1 1 1 1 Integrase core domain rve_2 PF13333.6 AHV93729.1 - 1.6e-07 31.4 0.0 1.7e-07 31.3 0.0 1.0 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AHV93729.1 - 0.0015 18.8 0.3 0.0017 18.6 0.3 1.1 1 0 0 1 1 1 1 DDE domain 2-Hacid_dh_C PF02826.19 AHV93730.1 - 9.8e-54 181.4 0.0 1.5e-53 180.8 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 AHV93730.1 - 1.5e-26 92.6 0.0 1.9e-26 92.3 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 AHV93730.1 - 0.0029 17.8 0.0 0.0058 16.8 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.18 AHV93730.1 - 0.1 12.5 0.0 0.21 11.5 0.0 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain tRNA-synt_1b PF00579.25 AHV93731.1 - 4.4e-53 180.5 0.0 5.5e-53 180.2 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) DUF1508 PF07411.12 AHV93731.1 - 0.017 15.0 0.0 0.034 14.0 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1508) Lactamase_B PF00753.27 AHV93732.1 - 0.00038 20.5 0.1 0.00055 20.0 0.1 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily ABC_tran PF00005.27 AHV93733.1 - 7.6e-31 107.4 0.0 9.9e-31 107.1 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 AHV93733.1 - 8e-12 45.6 1.8 1.8e-08 34.6 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_19 PF13245.6 AHV93733.1 - 0.00073 19.9 0.0 0.00092 19.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 AHV93733.1 - 0.0009 19.5 0.4 0.011 16.0 0.4 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 AHV93733.1 - 0.0096 16.3 0.6 0.016 15.6 0.5 1.7 1 1 0 1 1 1 1 AAA ATPase domain cobW PF02492.19 AHV93733.1 - 0.018 14.6 0.0 0.032 13.8 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 AHV93733.1 - 0.019 14.7 0.0 0.06 13.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 AHV93733.1 - 0.033 14.1 0.1 0.059 13.3 0.1 1.4 1 0 0 1 1 1 0 NACHT domain Pox_A32 PF04665.12 AHV93733.1 - 0.043 13.3 0.1 0.071 12.6 0.1 1.3 1 0 0 1 1 1 0 Poxvirus A32 protein RsgA_GTPase PF03193.16 AHV93733.1 - 0.045 13.7 0.1 0.096 12.6 0.0 1.5 2 0 0 2 2 2 0 RsgA GTPase SMC_N PF02463.19 AHV93733.1 - 0.053 13.0 0.3 1.3 8.5 0.1 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain ABC_ATPase PF09818.9 AHV93733.1 - 0.06 12.1 3.6 0.093 11.5 0.2 2.4 2 1 0 2 2 2 0 Predicted ATPase of the ABC class MobB PF03205.14 AHV93733.1 - 0.068 13.1 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_5 PF07728.14 AHV93733.1 - 0.081 12.9 0.0 0.16 12.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) ATPase_2 PF01637.18 AHV93733.1 - 0.11 12.4 0.0 0.17 11.8 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea T2SSE PF00437.20 AHV93733.1 - 0.13 11.3 0.0 0.21 10.6 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein FtsK_SpoIIIE PF01580.18 AHV93733.1 - 0.14 11.5 0.1 0.27 10.6 0.1 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_29 PF13555.6 AHV93733.1 - 0.14 11.9 0.0 0.26 11.0 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_33 PF13671.6 AHV93733.1 - 0.14 12.3 0.2 0.39 10.9 0.2 2.0 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.22 AHV93733.1 - 0.14 11.3 0.0 0.21 10.7 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain Mg_chelatase PF01078.21 AHV93733.1 - 0.18 11.2 0.0 0.32 10.4 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI ACCA PF03255.14 AHV93734.1 - 1.7e-66 222.5 0.0 2.3e-66 222.1 0.0 1.2 1 0 0 1 1 1 1 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit Carboxyl_trans PF01039.22 AHV93734.1 - 4.7e-20 71.7 0.0 6e-20 71.3 0.0 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain MdcE PF06833.11 AHV93734.1 - 0.0063 16.0 0.1 0.0086 15.6 0.1 1.3 1 0 0 1 1 1 1 Malonate decarboxylase gamma subunit (MdcE) GIT_CC PF16559.5 AHV93734.1 - 0.0078 16.1 1.4 0.0078 16.1 0.3 1.5 2 0 0 2 2 2 1 GIT coiled-coil Rho guanine nucleotide exchange factor NTPase_1 PF03266.15 AHV93734.1 - 0.02 14.8 0.0 0.033 14.1 0.0 1.3 1 0 0 1 1 1 0 NTPase Osmo_CC PF08946.10 AHV93734.1 - 0.62 10.4 1.9 6.4 7.1 0.5 2.7 2 1 0 2 2 2 0 Osmosensory transporter coiled coil TetR_N PF00440.23 AHV93737.1 - 8.6e-16 57.5 0.1 1.7e-15 56.5 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_24 PF17932.1 AHV93737.1 - 1.1e-14 54.7 3.2 5.3e-14 52.5 3.2 2.1 1 1 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain RBFA PF02033.18 AHV93738.1 - 3.2e-24 85.4 0.0 3.7e-24 85.2 0.0 1.0 1 0 0 1 1 1 1 Ribosome-binding factor A TetR_C_36 PF18598.1 AHV93738.1 - 0.085 12.8 0.0 0.14 12.2 0.0 1.3 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain FUSC-like PF12805.7 AHV93739.1 - 3.4e-31 108.4 8.9 4.1e-31 108.1 8.9 1.1 1 0 0 1 1 1 1 FUSC-like inner membrane protein yccS Amino_oxidase PF01593.24 AHV93740.1 - 1.7e-21 77.1 0.1 2e-21 76.8 0.1 1.0 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase HTH_24 PF13412.6 AHV93741.1 - 4e-20 71.1 1.2 7e-20 70.3 1.2 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 AHV93741.1 - 1.7e-18 66.1 3.6 3.7e-18 65.1 3.6 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.21 AHV93741.1 - 2.8e-18 65.7 0.5 4e-18 65.2 0.1 1.5 2 0 0 2 2 2 1 Lrp/AsnC ligand binding domain MarR PF01047.22 AHV93741.1 - 9e-05 22.3 0.0 0.00017 21.4 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 AHV93741.1 - 0.00015 21.8 0.1 0.00035 20.6 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 AHV93741.1 - 0.00023 21.0 0.4 0.00066 19.5 0.1 1.8 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.6 AHV93741.1 - 0.0077 16.7 0.1 0.017 15.6 0.1 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain DDRGK PF09756.9 AHV93741.1 - 0.011 15.4 0.0 0.021 14.4 0.0 1.4 1 0 0 1 1 1 0 DDRGK domain Fe_dep_repress PF01325.19 AHV93741.1 - 0.024 14.8 0.0 0.06 13.5 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_Crp_2 PF13545.6 AHV93741.1 - 0.036 14.1 0.1 0.063 13.3 0.1 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain GntR PF00392.21 AHV93741.1 - 0.041 13.5 0.1 0.095 12.4 0.1 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family LexA_DNA_bind PF01726.16 AHV93741.1 - 0.083 12.7 0.0 0.25 11.1 0.0 1.9 1 1 0 1 1 1 0 LexA DNA binding domain HTH_11 PF08279.12 AHV93741.1 - 0.089 12.8 0.1 0.18 11.8 0.1 1.5 1 0 0 1 1 1 0 HTH domain FliE PF02049.18 AHV93742.1 - 4e-28 97.4 3.0 4.3e-28 97.3 2.5 1.3 1 1 0 1 1 1 1 Flagellar hook-basal body complex protein FliE TctA PF01970.16 AHV93743.1 - 2.1e-140 468.1 40.3 2.5e-140 467.8 40.3 1.1 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family DUF756 PF05506.12 AHV93744.1 - 1.8e-37 128.1 3.0 1.5e-21 77.0 0.3 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF756) Phosphoesterase PF04185.14 AHV93744.1 - 6e-18 65.2 0.0 9e-18 64.6 0.0 1.3 1 0 0 1 1 1 1 Phosphoesterase family rve_3 PF13683.6 AHV93745.1 - 4e-26 90.6 0.1 4.7e-26 90.3 0.1 1.1 1 0 0 1 1 1 1 Integrase core domain rve_2 PF13333.6 AHV93745.1 - 5.8e-08 32.8 0.0 7.4e-08 32.5 0.0 1.1 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AHV93745.1 - 0.003 17.8 0.0 0.0035 17.6 0.0 1.1 1 0 0 1 1 1 1 DDE domain rve_3 PF13683.6 AHV93746.1 - 8.5e-32 108.8 0.1 4.5e-31 106.4 0.0 2.2 2 0 0 2 2 2 1 Integrase core domain rve PF00665.26 AHV93746.1 - 2.5e-24 85.7 0.0 6.4e-23 81.2 0.0 2.2 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 AHV93746.1 - 1.8e-11 44.0 8.6 3.6e-11 43.0 8.6 1.5 1 0 0 1 1 1 1 HTH-like domain rve_2 PF13333.6 AHV93746.1 - 5.7e-07 29.6 0.0 1.3e-06 28.5 0.0 1.6 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AHV93746.1 - 0.00048 20.4 0.0 0.0011 19.3 0.0 1.6 1 1 1 2 2 2 1 DDE domain Rhomboid_SP PF12595.8 AHV93746.1 - 0.0072 15.7 0.3 2 7.7 0.0 2.3 1 1 0 2 2 2 2 Rhomboid serine protease DUF1780 PF08682.10 AHV93746.1 - 0.12 12.0 0.8 1.8 8.2 0.2 2.2 2 0 0 2 2 2 0 Putative endonuclease, protein of unknown function (DUF1780) Bac_DnaA PF00308.18 AHV93747.1 - 6.6e-14 52.3 0.0 3.9e-09 36.7 0.0 2.0 2 0 0 2 2 2 2 Bacterial dnaA protein AAA_22 PF13401.6 AHV93747.1 - 0.00022 21.5 0.2 0.19 12.0 0.0 2.4 1 1 1 2 2 2 2 AAA domain AAA PF00004.29 AHV93747.1 - 0.00032 21.1 0.0 0.0013 19.2 0.0 2.0 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 AHV93747.1 - 0.0012 19.3 10.2 0.052 13.9 10.2 3.0 1 1 0 1 1 1 1 AAA ATPase domain AFG1_ATPase PF03969.16 AHV93747.1 - 0.025 13.5 0.0 0.047 12.6 0.0 1.4 1 0 0 1 1 1 0 AFG1-like ATPase AP_endonuc_2 PF01261.24 AHV93747.1 - 0.052 13.0 0.0 0.09 12.2 0.0 1.3 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel Cytidylate_kin PF02224.18 AHV93747.1 - 0.059 13.1 0.0 0.086 12.6 0.0 1.3 1 0 0 1 1 1 0 Cytidylate kinase IstB_IS21 PF01695.17 AHV93747.1 - 0.065 13.0 0.2 0.23 11.2 0.2 1.9 1 1 0 1 1 1 0 IstB-like ATP binding protein ABC_tran PF00005.27 AHV93747.1 - 0.15 12.6 0.0 0.32 11.5 0.0 1.5 1 0 0 1 1 1 0 ABC transporter RNA_helicase PF00910.22 AHV93747.1 - 0.22 11.9 0.0 0.39 11.1 0.0 1.5 1 1 0 1 1 1 0 RNA helicase Cpn60_TCP1 PF00118.24 AHV93748.1 - 2.3e-96 323.3 18.4 4e-96 322.6 18.4 1.3 1 1 0 1 1 1 1 TCP-1/cpn60 chaperonin family DDE_Tnp_ISL3 PF01610.17 AHV93749.1 - 7.9e-65 218.9 1.2 1.1e-64 218.4 0.3 1.6 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV93749.1 - 1.4e-11 43.6 0.1 3.6e-11 42.3 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV93749.1 - 5.3e-09 36.6 11.2 1.1e-08 35.6 11.2 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV93749.1 - 0.0056 16.7 0.2 0.016 15.3 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain SLT_L PF14718.6 AHV93749.1 - 0.016 15.3 1.5 0.016 15.3 1.5 1.8 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain NOB1_Zn_bind PF08772.11 AHV93749.1 - 0.017 15.2 0.2 1.2 9.3 0.0 2.5 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-IS66 PF13005.7 AHV93749.1 - 8.2 6.9 9.6 3.6 8.1 6.6 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Ribonuc_red_2_N PF08471.10 AHV93750.1 - 0.16 12.1 0.0 0.21 11.8 0.0 1.1 1 0 0 1 1 1 0 Class II vitamin B12-dependent ribonucleotide reductase LysR_substrate PF03466.20 AHV93751.1 - 5.8e-09 35.6 2.9 6.4e-09 35.5 2.9 1.0 1 0 0 1 1 1 1 LysR substrate binding domain Fer4_9 PF13187.6 AHV93752.1 - 1.8e-05 24.8 8.3 3e-05 24.1 8.3 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 AHV93752.1 - 0.00058 19.9 5.9 0.00088 19.3 5.9 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 AHV93752.1 - 0.0049 17.4 9.5 0.013 16.0 9.6 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 AHV93752.1 - 0.013 15.6 10.7 0.25 11.5 1.8 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4 PF00037.27 AHV93752.1 - 0.018 14.9 1.1 0.018 14.9 1.1 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_8 PF13183.6 AHV93752.1 - 0.044 14.2 12.3 0.54 10.7 3.3 2.1 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 AHV93752.1 - 0.045 14.3 13.5 1.5 9.4 13.2 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain FpoO PF10621.9 AHV93752.1 - 0.055 13.8 0.9 0.075 13.3 0.9 1.2 1 0 0 1 1 1 0 F420H2 dehydrogenase subunit FpoO Fer4_21 PF14697.6 AHV93752.1 - 0.055 13.6 5.2 0.69 10.1 0.4 2.2 2 0 0 2 2 2 0 4Fe-4S dicluster domain DUF3088 PF11287.8 AHV93752.1 - 0.097 12.4 0.1 0.18 11.6 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3088) Fer4_6 PF12837.7 AHV93752.1 - 0.11 12.7 1.5 0.11 12.7 1.5 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.7 AHV93752.1 - 0.57 10.8 12.3 3.4 8.4 2.0 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain TctC PF03401.14 AHV93753.1 - 2.3e-89 299.1 0.0 2.7e-89 298.9 0.0 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor NAD_binding_2 PF03446.15 AHV93754.1 - 6.1e-46 156.5 1.3 8.5e-46 156.0 1.3 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.6 AHV93754.1 - 2.2e-34 118.3 1.3 3.2e-34 117.8 0.2 1.8 3 0 0 3 3 3 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase F420_oxidored PF03807.17 AHV93754.1 - 4.3e-11 43.2 0.0 1.2e-10 41.8 0.0 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.20 AHV93754.1 - 2.5e-08 34.1 0.1 5.1e-08 33.1 0.0 1.6 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase ApbA PF02558.16 AHV93754.1 - 3.9e-06 26.6 0.0 7.5e-06 25.7 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.18 AHV93754.1 - 5.8e-05 23.1 0.1 0.0001 22.3 0.1 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 AHV93754.1 - 8.2e-05 22.0 0.0 0.00014 21.3 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 AHV93754.1 - 0.0011 18.5 0.0 0.0031 17.1 0.0 1.7 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain IlvN PF07991.12 AHV93754.1 - 0.0018 17.8 0.1 0.0034 17.0 0.1 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain ADH_zinc_N PF00107.26 AHV93754.1 - 0.0065 16.5 0.7 0.036 14.0 0.0 2.4 1 1 2 3 3 3 1 Zinc-binding dehydrogenase adh_short PF00106.25 AHV93754.1 - 0.0068 15.9 0.1 0.064 12.7 0.0 2.1 2 0 0 2 2 2 1 short chain dehydrogenase NAD_binding_7 PF13241.6 AHV93754.1 - 0.0074 16.7 0.1 0.033 14.6 0.1 2.0 1 1 0 1 1 1 1 Putative NAD(P)-binding NAD_binding_10 PF13460.6 AHV93754.1 - 0.019 14.9 0.4 0.057 13.3 0.4 1.8 1 1 0 1 1 1 0 NAD(P)H-binding Pyr_redox PF00070.27 AHV93754.1 - 0.028 15.0 0.0 0.081 13.5 0.0 1.8 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_Gly3P_dh_N PF01210.23 AHV93754.1 - 0.073 13.0 0.1 0.16 11.9 0.1 1.6 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus P-II PF00543.22 AHV93756.1 - 2e-40 137.5 0.6 2.2e-40 137.4 0.6 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II Fer4_21 PF14697.6 AHV93757.1 - 9.5e-17 60.9 14.4 9.5e-17 60.9 14.4 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain FeS PF04060.13 AHV93757.1 - 6.3e-14 51.3 3.1 1.9e-13 49.8 3.1 1.9 1 0 0 1 1 1 1 Putative Fe-S cluster Fer4 PF00037.27 AHV93757.1 - 6.2e-12 44.8 22.9 3.6e-07 29.7 4.8 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 AHV93757.1 - 9.3e-07 29.3 13.3 9.3e-07 29.3 13.3 2.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 AHV93757.1 - 5.1e-06 26.5 18.8 2e-05 24.6 11.7 3.3 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 AHV93757.1 - 7.8e-06 26.0 11.8 7.8e-06 26.0 11.8 2.5 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 AHV93757.1 - 1.5e-05 25.8 16.4 0.00054 20.8 1.8 3.2 3 1 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 AHV93757.1 - 4.7e-05 23.3 27.1 8.3e-05 22.5 5.1 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.7 AHV93757.1 - 7e-05 22.7 19.9 0.00058 19.8 2.5 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_3 PF12798.7 AHV93757.1 - 0.0055 17.6 3.8 0.0055 17.6 3.8 3.9 4 0 0 4 4 4 1 4Fe-4S binding domain Fer4_4 PF12800.7 AHV93757.1 - 0.079 13.5 2.0 0.079 13.5 2.0 3.4 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_8 PF13183.6 AHV93757.1 - 0.084 13.3 18.1 0.16 12.5 2.3 3.3 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 AHV93757.1 - 0.13 13.2 0.4 0.13 13.2 0.4 2.8 3 0 0 3 3 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 AHV93757.1 - 0.27 11.8 21.9 0.31 11.6 1.3 3.4 1 1 3 4 4 4 0 4Fe-4S dicluster domain GntP_permease PF02447.16 AHV93758.1 - 2.1e-06 26.8 24.0 2.1e-06 26.8 24.0 1.9 2 1 0 2 2 2 1 GntP family permease DUF4381 PF14316.6 AHV93758.1 - 0.69 10.2 2.4 12 6.2 0.1 3.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4381) ABC_tran PF00005.27 AHV93759.1 - 3.2e-30 105.4 0.0 4.1e-30 105.1 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 AHV93759.1 - 5.2e-06 26.5 0.2 0.032 14.1 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 AHV93759.1 - 0.0036 17.0 0.1 0.0093 15.7 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 AHV93759.1 - 0.0048 17.2 0.1 0.03 14.6 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 AHV93759.1 - 0.0051 16.6 0.3 0.012 15.3 0.3 1.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 AHV93759.1 - 0.0064 16.9 0.3 0.012 16.1 0.3 1.5 1 1 0 1 1 1 1 AAA ATPase domain NACHT PF05729.12 AHV93759.1 - 0.029 14.3 0.6 0.061 13.2 0.1 1.8 2 1 1 3 3 3 0 NACHT domain MMR_HSR1 PF01926.23 AHV93759.1 - 0.04 14.0 0.0 0.072 13.2 0.0 1.4 1 0 0 1 1 1 0 50S ribosome-binding GTPase NTPase_1 PF03266.15 AHV93759.1 - 0.045 13.7 0.1 0.49 10.3 0.1 2.1 2 0 0 2 2 2 0 NTPase Mg_chelatase PF01078.21 AHV93759.1 - 0.049 13.0 0.3 0.1 12.0 0.3 1.6 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI MobB PF03205.14 AHV93759.1 - 0.071 13.0 0.1 0.14 12.1 0.1 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B RsgA_GTPase PF03193.16 AHV93759.1 - 0.078 12.9 0.1 0.14 12.1 0.1 1.3 1 0 0 1 1 1 0 RsgA GTPase DLIC PF05783.11 AHV93759.1 - 0.21 10.4 0.1 0.29 9.9 0.1 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) LysR_substrate PF03466.20 AHV93761.1 - 1.8e-25 89.6 0.1 2.3e-25 89.2 0.1 1.2 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 AHV93761.1 - 6.5e-17 61.2 0.2 2.1e-16 59.6 0.2 2.0 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_28 PF13518.6 AHV93761.1 - 0.012 15.7 0.0 0.029 14.5 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain G_glu_transpept PF01019.21 AHV93762.1 - 6.4e-123 411.2 0.0 7.4e-123 411.0 0.0 1.0 1 0 0 1 1 1 1 Gamma-glutamyltranspeptidase BPD_transp_1 PF00528.22 AHV93763.1 - 2e-19 70.0 13.0 2e-19 70.0 13.0 1.9 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component Glyco_transf_4 PF13439.6 AHV93764.1 - 1.2e-24 87.2 2.5 1.8e-24 86.7 2.5 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.20 AHV93764.1 - 8.3e-21 74.3 0.0 1.2e-20 73.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 AHV93764.1 - 1.6e-18 67.4 0.0 3.2e-18 66.5 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 AHV93764.1 - 2.6e-10 41.0 2.4 2.6e-10 41.0 2.4 2.0 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 AHV93764.1 - 6.1e-08 33.0 0.0 1.1e-07 32.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 AHV93764.1 - 4.6e-06 26.7 0.0 6.9e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like DUF1624 PF07786.12 AHV93765.1 - 0.013 15.1 6.2 0.032 13.8 6.2 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF1624) Lactamase_B PF00753.27 AHV93766.1 - 4.7e-21 75.7 0.5 7.5e-21 75.0 0.5 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 AHV93766.1 - 0.00068 19.2 0.2 0.0011 18.5 0.2 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain adh_short_C2 PF13561.6 AHV93767.1 - 1.7e-19 70.4 0.2 2.6e-19 69.7 0.2 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 AHV93767.1 - 2.8e-06 26.9 0.1 4.8e-06 26.2 0.0 1.5 2 0 0 2 2 2 1 short chain dehydrogenase SnoaL_2 PF12680.7 AHV93768.1 - 1.7e-09 38.2 0.0 2e-09 38.0 0.0 1.1 1 0 0 1 1 1 1 SnoaL-like domain SnoaL PF07366.12 AHV93768.1 - 2.7e-07 30.4 0.0 3.1e-07 30.2 0.0 1.1 1 0 0 1 1 1 1 SnoaL-like polyketide cyclase OPT PF03169.15 AHV93769.1 - 9.4e-60 202.9 25.4 1.2e-59 202.6 25.4 1.1 1 0 0 1 1 1 1 OPT oligopeptide transporter protein UPF0220 PF05255.11 AHV93769.1 - 0.063 12.8 0.0 0.063 12.8 0.0 3.1 4 0 0 4 4 4 0 Uncharacterised protein family (UPF0220) BPD_transp_1 PF00528.22 AHV93770.1 - 4.7e-07 29.7 3.3 4.7e-07 29.7 3.3 2.6 1 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component DUF3021 PF11457.8 AHV93770.1 - 2.5 8.5 10.2 11 6.4 10.1 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF3021) HTH_1 PF00126.27 AHV93771.1 - 4.9e-19 68.0 0.2 1.1e-18 67.0 0.2 1.6 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family LysR_substrate PF03466.20 AHV93771.1 - 9.8e-19 67.5 6.2 1.4e-18 67.1 6.2 1.2 1 0 0 1 1 1 1 LysR substrate binding domain HTH_30 PF13556.6 AHV93771.1 - 0.033 14.0 0.0 0.61 9.9 0.0 2.8 3 0 0 3 3 3 0 PucR C-terminal helix-turn-helix domain BPD_transp_1 PF00528.22 AHV93772.1 - 2.8e-15 56.5 26.4 3.2e-14 53.1 26.4 2.1 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component DUF2975 PF11188.8 AHV93772.1 - 5.7 6.8 10.7 0.12 12.3 1.3 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF2975) YceG PF02618.16 AHV93773.1 - 9.4e-80 268.1 0.0 1.1e-79 267.9 0.0 1.0 1 0 0 1 1 1 1 YceG-like family DUF4129 PF13559.6 AHV93773.1 - 6.3 7.1 8.6 2.9 8.2 1.3 3.5 3 1 0 3 3 3 0 Domain of unknown function (DUF4129) NlpE PF04170.12 AHV93775.1 - 2.6e-12 47.5 0.0 2.9e-12 47.4 0.0 1.0 1 0 0 1 1 1 1 NlpE N-terminal domain M20_dimer PF07687.14 AHV93776.1 - 3.1e-05 23.8 0.4 8.5e-05 22.4 0.4 1.7 1 1 0 1 1 1 1 Peptidase dimerisation domain 2OG-FeII_Oxy_2 PF13532.6 AHV93777.1 - 3.7e-49 167.6 0.0 4.1e-49 167.4 0.0 1.0 1 0 0 1 1 1 1 2OG-Fe(II) oxygenase superfamily NMO PF03060.15 AHV93778.1 - 4.9e-22 78.7 1.6 3e-21 76.2 1.6 2.0 1 1 0 1 1 1 1 Nitronate monooxygenase FMN_dh PF01070.18 AHV93778.1 - 3.2e-11 42.9 5.3 9.2e-10 38.1 4.2 2.1 1 1 1 2 2 2 2 FMN-dependent dehydrogenase Glu_synthase PF01645.17 AHV93778.1 - 0.19 10.8 0.7 0.33 10.0 0.7 1.3 1 0 0 1 1 1 0 Conserved region in glutamate synthase IMPDH PF00478.25 AHV93778.1 - 5.9 5.8 7.1 2.9 6.8 3.3 2.5 2 1 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain RHH_1 PF01402.21 AHV93779.1 - 0.00039 20.3 0.1 0.00077 19.3 0.1 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family Metal_resist PF13801.6 AHV93779.1 - 0.00045 20.4 1.9 0.0007 19.8 2.0 1.4 1 1 0 1 1 1 1 Heavy-metal resistance IF2_N PF04760.15 AHV93779.1 - 0.029 14.2 0.7 0.052 13.4 0.0 1.6 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region Response_reg PF00072.24 AHV93780.1 - 1e-24 86.8 0.0 1.9e-24 86.0 0.0 1.5 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 AHV93780.1 - 7.4e-15 54.8 0.0 1.4e-14 53.9 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal Methyltr_RsmB-F PF01189.17 AHV93781.1 - 1.3e-48 165.3 0.0 2.4e-48 164.4 0.0 1.4 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltransf_31 PF13847.6 AHV93781.1 - 4.6e-06 26.5 0.0 7.1e-06 25.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltr_RsmF_N PF17125.5 AHV93781.1 - 0.00011 22.6 0.0 0.00021 21.7 0.0 1.4 1 0 0 1 1 1 1 N-terminal domain of 16S rRNA methyltransferase RsmF PCMT PF01135.19 AHV93781.1 - 0.028 14.2 0.0 0.061 13.1 0.0 1.5 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) FtsJ PF01728.19 AHV93781.1 - 0.033 14.3 0.0 0.058 13.5 0.0 1.3 1 0 0 1 1 1 0 FtsJ-like methyltransferase IMS_C PF11799.8 AHV93782.1 - 1.4e-11 45.2 0.3 2e-11 44.6 0.3 1.3 1 0 0 1 1 1 1 impB/mucB/samB family C-terminal domain IMS_HHH PF11798.8 AHV93782.1 - 5.1e-08 32.8 0.0 1e-07 31.8 0.0 1.6 1 0 0 1 1 1 1 IMS family HHH motif Cdd1 PF11731.8 AHV93782.1 - 0.018 15.3 0.0 0.031 14.5 0.0 1.4 1 0 0 1 1 1 0 Pathogenicity locus IclR PF01614.18 AHV93783.1 - 1.1e-13 51.1 0.0 1.6e-13 50.6 0.0 1.2 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 AHV93783.1 - 1.4e-10 40.8 0.1 6.1e-10 38.7 0.1 2.2 2 0 0 2 2 2 1 IclR helix-turn-helix domain FlgD_ig PF13860.6 AHV93783.1 - 0.033 14.0 0.0 0.068 13.0 0.0 1.5 1 0 0 1 1 1 0 FlgD Ig-like domain TrmB PF01978.19 AHV93783.1 - 0.21 11.5 0.0 0.47 10.4 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB FemAB_like PF04339.12 AHV93784.1 - 4.8e-146 486.6 0.0 5.4e-146 486.5 0.0 1.0 1 0 0 1 1 1 1 Peptidogalycan biosysnthesis/recognition Acetyltransf_6 PF13480.7 AHV93784.1 - 4e-13 49.7 1.6 4e-13 49.7 1.6 2.4 3 0 0 3 3 3 1 Acetyltransferase (GNAT) domain FemAB PF02388.16 AHV93784.1 - 0.013 14.5 0.1 0.026 13.4 0.1 1.4 1 1 0 1 1 1 0 FemAB family Muraidase PF11860.8 AHV93784.1 - 0.035 14.3 0.3 8.7 6.5 0.0 2.3 2 0 0 2 2 2 0 N-acetylmuramidase AMP-binding_C PF13193.6 AHV93785.1 - 2.9e-20 73.0 0.4 3.6e-20 72.7 0.4 1.1 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding_C_2 PF14535.6 AHV93785.1 - 0.00015 22.0 0.1 0.0002 21.6 0.1 1.2 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ABC_tran PF00005.27 AHV93786.1 - 3e-20 73.1 0.0 9.6e-20 71.5 0.0 1.8 1 1 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 AHV93786.1 - 9.3e-05 22.4 0.1 0.0085 15.9 0.0 2.4 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 AHV93786.1 - 0.0046 16.7 0.0 0.009 15.7 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.29 AHV93786.1 - 0.0073 16.7 0.0 0.032 14.7 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 AHV93786.1 - 0.0091 15.7 0.0 0.013 15.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 AHV93786.1 - 0.011 16.1 0.1 0.018 15.4 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_23 PF13476.6 AHV93786.1 - 0.019 15.5 0.0 0.027 15.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 AHV93786.1 - 0.026 14.6 0.0 0.045 13.8 0.0 1.4 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_30 PF13604.6 AHV93786.1 - 0.035 13.8 0.0 0.056 13.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 AHV93786.1 - 0.044 13.7 0.0 0.081 12.8 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase Mg_chelatase PF01078.21 AHV93786.1 - 0.048 13.0 0.1 5.9 6.2 0.0 2.1 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI DUF3584 PF12128.8 AHV93786.1 - 0.076 10.5 0.1 0.59 7.6 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3584) AAA_13 PF13166.6 AHV93786.1 - 0.1 11.2 0.0 0.14 10.8 0.0 1.1 1 0 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.25 AHV93786.1 - 0.12 12.0 0.1 0.15 11.7 0.1 1.3 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain SbcCD_C PF13558.6 AHV93786.1 - 0.14 12.4 0.0 0.33 11.2 0.0 1.7 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit TniB PF05621.11 AHV93786.1 - 0.14 11.5 0.0 1.4 8.3 0.0 2.0 2 0 0 2 2 2 0 Bacterial TniB protein cobW PF02492.19 AHV93786.1 - 0.24 11.0 0.0 0.43 10.2 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain BPD_transp_1 PF00528.22 AHV93787.1 - 8.3e-42 143.0 18.5 8.3e-42 143.0 18.5 2.3 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component Pyr_redox_2 PF07992.14 AHV93788.1 - 2e-34 119.2 0.9 2.6e-34 118.8 0.9 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 AHV93788.1 - 3.5e-15 56.2 0.0 7.4e-15 55.2 0.0 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GIDA PF01134.22 AHV93788.1 - 2.3e-10 40.1 5.2 2.9e-09 36.5 0.4 3.0 3 0 0 3 3 3 1 Glucose inhibited division protein A Pyr_redox_3 PF13738.6 AHV93788.1 - 2.8e-09 36.7 0.1 0.00021 20.6 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 AHV93788.1 - 2.5e-08 34.4 2.6 1.9e-06 28.3 0.1 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 AHV93788.1 - 0.00031 20.1 0.5 0.051 12.8 0.1 2.4 2 0 0 2 2 2 2 Thi4 family K_oxygenase PF13434.6 AHV93788.1 - 0.00047 19.4 0.1 0.0018 17.5 0.0 1.9 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) AlaDh_PNT_C PF01262.21 AHV93788.1 - 0.00051 19.4 5.3 0.3 10.4 1.4 2.4 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_8 PF13450.6 AHV93788.1 - 0.0011 19.2 6.9 0.032 14.5 1.6 2.6 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 AHV93788.1 - 0.0016 17.3 1.4 0.048 12.4 1.7 2.2 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_2 PF00890.24 AHV93788.1 - 0.0027 16.8 4.4 0.0027 16.8 4.4 2.3 1 1 0 2 2 2 1 FAD binding domain 3HCDH_N PF02737.18 AHV93788.1 - 0.027 14.4 2.5 0.17 11.8 0.1 2.2 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_3 PF01494.19 AHV93788.1 - 0.06 12.6 7.6 1.1 8.4 0.4 3.2 3 0 0 3 3 3 0 FAD binding domain 2-Hacid_dh_C PF02826.19 AHV93788.1 - 0.25 10.7 0.9 3 7.2 0.0 2.6 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 AHV93788.1 - 1.5 8.4 2.8 1.7 8.2 0.4 2.2 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain MR_MLE_C PF13378.6 AHV93789.1 - 5.3e-51 173.3 1.0 7.2e-51 172.9 1.0 1.2 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 AHV93789.1 - 7.6e-17 61.6 0.0 1.4e-16 60.7 0.0 1.4 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain rve PF00665.26 AHV93790.1 - 4.2e-25 88.2 0.0 5.7e-25 87.8 0.0 1.2 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.6 AHV93790.1 - 0.00019 21.1 0.0 0.00085 19.1 0.0 2.1 2 1 0 2 2 2 1 Integrase core domain PmoA PF14100.6 AHV93790.1 - 0.042 13.3 0.1 0.095 12.2 0.1 1.5 1 0 0 1 1 1 0 Methane oxygenase PmoA Pirin PF02678.16 AHV93791.1 - 1.2e-36 125.0 0.2 1.8e-36 124.4 0.2 1.3 1 0 0 1 1 1 1 Pirin Pirin_C_2 PF17954.1 AHV93791.1 - 4.6e-22 78.0 0.5 1e-21 76.9 0.5 1.6 1 0 0 1 1 1 1 Quercetinase C-terminal cupin domain Cupin_2 PF07883.11 AHV93791.1 - 0.00016 21.3 0.4 0.0011 18.6 0.1 2.1 2 0 0 2 2 2 1 Cupin domain RNA_pol_Rpb1_1 PF04997.12 AHV93792.1 - 4.5e-86 289.0 0.0 6.6e-86 288.5 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_5 PF04998.17 AHV93792.1 - 1.1e-75 254.5 0.2 2e-75 253.7 0.2 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 RNA_pol_Rpb1_2 PF00623.20 AHV93792.1 - 2.4e-37 128.7 0.0 1.4e-26 93.7 0.0 2.5 1 1 1 2 2 2 2 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.18 AHV93792.1 - 1.2e-24 87.0 0.0 2.4e-24 86.1 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_4 PF05000.17 AHV93792.1 - 1.4e-18 66.8 0.1 3.8e-18 65.4 0.1 1.8 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 Apocytochr_F_C PF01333.19 AHV93792.1 - 3.4e-07 30.3 1.2 0.3 11.1 0.1 3.6 3 0 0 3 3 3 3 Apocytochrome F, C-terminal Biotin_lipoyl_2 PF13533.6 AHV93792.1 - 2.4e-06 27.3 4.7 0.16 11.8 0.1 3.6 3 0 0 3 3 3 2 Biotin-lipoyl like Peptidase_M23 PF01551.22 AHV93792.1 - 0.007 16.5 2.0 1.5 9.1 0.0 3.8 3 1 0 3 3 3 1 Peptidase family M23 QRPTase_N PF02749.16 AHV93792.1 - 0.022 14.8 0.0 36 4.5 0.0 3.7 3 0 0 3 3 3 0 Quinolinate phosphoribosyl transferase, N-terminal domain Biotin_lipoyl PF00364.22 AHV93792.1 - 0.1 12.4 1.3 40 4.2 0.1 3.7 3 0 0 3 3 3 0 Biotin-requiring enzyme Baculo_ME53 PF06061.11 AHV93792.1 - 0.27 10.4 1.0 0.99 8.6 0.0 2.1 2 0 0 2 2 2 0 Baculoviridae ME53 ABC_trans_aux PF03886.13 AHV93793.1 - 2e-40 138.0 2.4 2.5e-40 137.7 2.4 1.1 1 0 0 1 1 1 1 ABC-type transport auxiliary lipoprotein component Ribosomal_S14 PF00253.21 AHV93794.1 - 2.7e-28 97.5 1.0 3.8e-28 97.0 1.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e Cys_Met_Meta_PP PF01053.20 AHV93795.1 - 4.8e-100 334.8 0.0 5.4e-100 334.6 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Met_gamma_lyase PF06838.11 AHV93795.1 - 4.3e-08 32.1 0.0 6.7e-08 31.5 0.0 1.2 1 0 0 1 1 1 1 Methionine gamma-lyase DegT_DnrJ_EryC1 PF01041.17 AHV93795.1 - 5.6e-05 22.6 0.3 0.00011 21.7 0.2 1.4 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 AHV93795.1 - 0.0063 15.5 0.0 0.0094 14.9 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 AHV93795.1 - 0.022 14.1 0.7 0.04 13.2 0.3 1.6 2 0 0 2 2 2 0 Beta-eliminating lyase Peptidase_M20 PF01546.28 AHV93796.1 - 6.9e-29 101.0 0.1 9.9e-29 100.5 0.1 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.17 AHV93796.1 - 0.00013 21.7 0.0 0.00021 21.0 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M28 M20_dimer PF07687.14 AHV93796.1 - 0.00085 19.2 0.0 0.0016 18.3 0.0 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain FlhD PF05247.13 AHV93797.1 - 1.3e-41 140.9 1.4 1.5e-41 140.8 1.4 1.0 1 0 0 1 1 1 1 Flagellar transcriptional activator (FlhD) DUF2857 PF11198.8 AHV93797.1 - 0.00027 20.8 0.1 0.00031 20.5 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2857) SBP_bac_5 PF00496.22 AHV93798.1 - 1.2e-17 64.0 0.1 1.6e-17 63.6 0.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Peptidase_C47 PF05543.13 AHV93798.1 - 0.093 12.3 0.0 0.12 11.9 0.0 1.1 1 0 0 1 1 1 0 Staphopain peptidase C47 Acyl_transf_1 PF00698.21 AHV93799.1 - 4.4e-28 98.7 9.0 5.6e-28 98.4 9.0 1.0 1 0 0 1 1 1 1 Acyl transferase domain Glyco_transf_4 PF13439.6 AHV93800.1 - 0.0059 16.6 0.1 0.0068 16.4 0.1 1.1 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 AHV93800.1 - 0.012 16.0 0.4 0.015 15.8 0.4 1.2 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain ABC_tran PF00005.27 AHV93801.1 - 1.5e-31 109.7 0.0 2.1e-31 109.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 AHV93801.1 - 1.7e-08 34.6 0.2 0.0002 21.3 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 AHV93801.1 - 0.00012 21.6 0.0 0.00062 19.3 0.0 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 AHV93801.1 - 0.0017 18.6 0.3 0.0053 17.0 0.3 1.9 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 AHV93801.1 - 0.0039 17.1 0.0 0.0073 16.2 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase SbcCD_C PF13558.6 AHV93801.1 - 0.0043 17.3 0.1 0.019 15.2 0.1 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_16 PF13191.6 AHV93801.1 - 0.012 16.1 0.5 0.025 15.0 0.5 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA PF00004.29 AHV93801.1 - 0.015 15.8 0.0 0.04 14.3 0.0 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 AHV93801.1 - 0.036 14.0 0.0 0.06 13.3 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_23 PF13476.6 AHV93801.1 - 0.04 14.4 0.0 0.065 13.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 AHV93801.1 - 0.042 13.6 0.1 0.74 9.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 AHV93801.1 - 0.067 13.1 0.2 0.15 12.0 0.2 1.5 1 0 0 1 1 1 0 NACHT domain AAA_17 PF13207.6 AHV93801.1 - 0.11 12.9 0.0 15 6.0 0.0 2.5 3 0 0 3 3 3 0 AAA domain AAA_29 PF13555.6 AHV93801.1 - 0.13 12.1 0.1 0.26 11.0 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_5 PF07728.14 AHV93801.1 - 0.15 12.1 0.1 0.32 11.0 0.1 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_28 PF13521.6 AHV93801.1 - 0.5 10.6 2.8 1.2 9.4 0.1 2.7 3 1 0 3 3 3 0 AAA domain rve_3 PF13683.6 AHV93803.1 - 9.5e-32 108.6 0.0 2.3e-31 107.3 0.0 1.7 2 0 0 2 2 2 1 Integrase core domain rve PF00665.26 AHV93803.1 - 2.8e-24 85.6 0.0 4.1e-24 85.1 0.0 1.3 1 0 0 1 1 1 1 Integrase core domain rve_2 PF13333.6 AHV93803.1 - 4.1e-07 30.1 0.0 7.1e-07 29.3 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AHV93803.1 - 0.0002 21.6 0.0 0.0004 20.6 0.0 1.5 1 1 1 2 2 2 1 DDE domain SCFA_trans PF02667.14 AHV93804.1 - 2.4e-124 415.8 27.9 2.7e-124 415.6 27.9 1.0 1 0 0 1 1 1 1 Short chain fatty acid transporter SnoaL_3 PF13474.6 AHV93805.1 - 4.1e-11 43.2 0.1 4.6e-11 43.0 0.1 1.0 1 0 0 1 1 1 1 SnoaL-like domain CaMKII_AD PF08332.10 AHV93805.1 - 0.0039 17.3 0.1 0.0056 16.8 0.1 1.2 1 0 0 1 1 1 1 Calcium/calmodulin dependent protein kinase II association domain SnoaL_2 PF12680.7 AHV93805.1 - 0.016 15.8 0.0 0.023 15.3 0.0 1.3 1 1 0 1 1 1 0 SnoaL-like domain DUF4440 PF14534.6 AHV93805.1 - 0.025 15.0 0.0 0.033 14.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4440) MmgE_PrpD PF03972.14 AHV93807.1 - 3.3e-160 533.4 0.0 4.1e-160 533.1 0.0 1.0 1 0 0 1 1 1 1 MmgE/PrpD family TctC PF03401.14 AHV93808.1 - 2.5e-69 233.4 0.3 3e-69 233.2 0.3 1.1 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor RRF PF01765.19 AHV93809.1 - 1.3e-60 204.1 1.8 1.7e-60 203.7 1.8 1.1 1 0 0 1 1 1 1 Ribosome recycling factor DUF883 PF05957.13 AHV93809.1 - 1.1 9.9 8.7 0.51 11.0 4.9 2.1 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF883) BCA_ABC_TP_C PF12399.8 AHV93810.1 - 2.4e-09 36.9 0.1 4e-09 36.2 0.1 1.4 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter ABC_tran PF00005.27 AHV93810.1 - 2.5e-08 34.5 0.0 4.1e-08 33.8 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 AHV93810.1 - 0.059 13.2 0.3 0.075 12.8 0.3 1.1 1 0 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system MFS_1 PF07690.16 AHV93811.1 - 2e-51 175.0 49.5 2e-51 175.0 49.5 2.0 1 1 1 2 2 2 1 Major Facilitator Superfamily HC2 PF07382.11 AHV93812.1 - 1.3e-28 100.4 99.0 7.4e-28 98.0 99.0 1.8 1 1 0 1 1 1 1 Histone H1-like nucleoprotein HC2 SOBP PF15279.6 AHV93812.1 - 8.6 6.9 14.4 12 6.4 14.4 1.2 1 0 0 1 1 1 0 Sine oculis-binding protein ThiG PF05690.14 AHV93813.1 - 1.5e-99 332.3 0.1 1.7e-99 332.1 0.1 1.0 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG His_biosynth PF00977.21 AHV93813.1 - 0.0019 17.7 0.1 0.0044 16.5 0.0 1.6 2 0 0 2 2 2 1 Histidine biosynthesis protein IMPDH PF00478.25 AHV93813.1 - 0.0092 15.0 0.7 0.014 14.4 0.7 1.2 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain FMN_dh PF01070.18 AHV93813.1 - 0.013 14.5 0.1 0.018 14.1 0.1 1.3 1 0 0 1 1 1 0 FMN-dependent dehydrogenase Lys-AminoMut_A PF09043.11 AHV93813.1 - 0.034 12.6 0.0 0.047 12.1 0.0 1.2 1 0 0 1 1 1 0 D-Lysine 5,6-aminomutase TIM-barrel domain of alpha subunit Acetyltransf_1 PF00583.25 AHV93815.1 - 1e-13 51.5 0.0 1.2e-13 51.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 AHV93815.1 - 2.7e-09 37.0 0.0 4.3e-09 36.4 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 AHV93815.1 - 1.6e-07 31.6 0.0 2.2e-07 31.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 AHV93815.1 - 0.14 12.8 0.0 0.2 12.3 0.0 1.3 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Glyco_tran_28_C PF04101.16 AHV93816.1 - 1.4e-36 126.0 0.1 1.7e-36 125.7 0.1 1.1 1 0 0 1 1 1 1 Glycosyltransferase family 28 C-terminal domain Glyco_transf_28 PF03033.20 AHV93816.1 - 0.00036 20.6 0.2 0.0011 19.0 0.0 1.9 2 0 0 2 2 2 1 Glycosyltransferase family 28 N-terminal domain 2-oxogl_dehyd_N PF16078.5 AHV93816.1 - 0.048 13.2 0.1 0.12 12.0 0.1 1.6 1 0 0 1 1 1 0 2-oxoglutarate dehydrogenase N-terminus Flg_hook PF02120.16 AHV93817.1 - 3.8e-14 52.3 1.3 3.8e-14 52.3 1.3 1.9 2 0 0 2 2 2 1 Flagellar hook-length control protein FliK DciA PF05258.12 AHV93817.1 - 0.0065 16.8 0.2 0.33 11.4 0.1 2.6 2 1 0 2 2 2 1 Dna[CI] antecedent, DciA 4HBT PF03061.22 AHV93818.1 - 2.2e-15 56.8 0.2 2.8e-15 56.4 0.2 1.1 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.6 AHV93818.1 - 5.7e-06 26.5 0.0 1.1e-05 25.6 0.0 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4442) 4HBT_3 PF13622.6 AHV93818.1 - 0.00012 22.4 0.1 0.00017 22.0 0.1 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily BAAT_C PF08840.11 AHV93819.1 - 1.8e-55 188.2 0.0 2.4e-55 187.8 0.0 1.1 1 0 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal Bile_Hydr_Trans PF04775.14 AHV93819.1 - 7.9e-30 103.5 0.1 1.1e-29 103.1 0.1 1.2 1 0 0 1 1 1 1 Acyl-CoA thioester hydrolase/BAAT N-terminal region Chlorophyllase2 PF12740.7 AHV93819.1 - 0.00095 18.1 0.0 0.0016 17.4 0.0 1.3 1 0 0 1 1 1 1 Chlorophyllase enzyme Abhydrolase_1 PF00561.20 AHV93819.1 - 0.0028 17.3 0.1 0.54 9.9 0.0 2.5 2 1 0 2 2 2 1 alpha/beta hydrolase fold Chlorophyllase PF07224.11 AHV93819.1 - 0.0045 16.1 0.0 0.0065 15.5 0.0 1.2 1 0 0 1 1 1 1 Chlorophyllase Hydrolase_4 PF12146.8 AHV93819.1 - 0.0098 15.2 0.0 0.034 13.4 0.0 1.8 2 0 0 2 2 2 1 Serine aminopeptidase, S33 TctC PF03401.14 AHV93820.1 - 9.4e-84 280.7 0.2 1.2e-83 280.4 0.2 1.1 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor Acyl-CoA_dh_1 PF00441.24 AHV93821.1 - 3.9e-35 121.3 1.0 5.5e-35 120.8 1.0 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 AHV93821.1 - 2.2e-21 76.6 0.0 4.7e-21 75.6 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 AHV93821.1 - 3.6e-20 72.0 0.0 6.2e-20 71.2 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 AHV93821.1 - 9.6e-14 51.8 2.4 1.6e-13 51.1 2.4 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Amidase PF01425.21 AHV93822.1 - 1.6e-67 228.4 0.9 1.8e-67 228.2 0.9 1.0 1 0 0 1 1 1 1 Amidase Ribul_P_3_epim PF00834.19 AHV93823.1 - 9.6e-89 296.0 0.0 1.1e-88 295.8 0.0 1.0 1 0 0 1 1 1 1 Ribulose-phosphate 3 epimerase family QRPTase_C PF01729.19 AHV93823.1 - 7.5e-05 22.6 0.0 0.015 15.1 0.0 2.5 2 1 1 3 3 3 2 Quinolinate phosphoribosyl transferase, C-terminal domain His_biosynth PF00977.21 AHV93823.1 - 0.0082 15.6 0.1 0.019 14.4 0.0 1.6 2 0 0 2 2 2 1 Histidine biosynthesis protein PcrB PF01884.17 AHV93823.1 - 0.054 12.9 0.1 4.1 6.8 0.1 2.2 2 0 0 2 2 2 0 PcrB family Cu-oxidase_4 PF02578.15 AHV93824.1 - 3.1e-37 128.4 1.8 3.7e-37 128.1 1.8 1.0 1 0 0 1 1 1 1 Multi-copper polyphenol oxidoreductase laccase PP-binding PF00550.25 AHV93825.1 - 1.7e-17 63.5 0.5 1.9e-17 63.4 0.5 1.0 1 0 0 1 1 1 1 Phosphopantetheine attachment site PP-binding_2 PF14573.6 AHV93825.1 - 6.7e-05 23.0 0.5 6.9e-05 23.0 0.5 1.1 1 0 0 1 1 1 1 Acyl-carrier Ribosomal_L50 PF10501.9 AHV93825.1 - 0.0032 17.6 0.1 0.004 17.3 0.1 1.3 1 1 0 1 1 1 1 Ribosomal subunit 39S DUF1896 PF08989.10 AHV93825.1 - 0.014 15.5 0.1 0.016 15.3 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1896) HLH PF00010.26 AHV93825.1 - 0.026 14.5 0.0 0.032 14.2 0.0 1.4 1 0 0 1 1 1 0 Helix-loop-helix DNA-binding domain EutQ PF06249.12 AHV93825.1 - 0.055 13.2 0.3 0.059 13.1 0.3 1.1 1 0 0 1 1 1 0 Ethanolamine utilisation protein EutQ DUF1493 PF07377.12 AHV93825.1 - 0.081 13.4 0.9 0.09 13.3 0.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1493) ATP-grasp_5 PF13549.6 AHV93826.1 - 3e-66 223.1 4.5 6.5e-66 222.0 3.5 2.0 2 0 0 2 2 2 1 ATP-grasp domain Succ_CoA_lig PF13607.6 AHV93826.1 - 4.5e-46 156.1 2.3 4.5e-46 156.1 2.3 2.9 3 0 0 3 3 3 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 AHV93826.1 - 7.2e-23 81.3 0.4 1.4e-21 77.1 0.1 3.0 3 0 0 3 3 3 1 CoA binding domain CoA_binding PF02629.19 AHV93826.1 - 8.7e-11 42.4 0.8 1.5e-09 38.4 0.1 3.4 3 0 0 3 3 3 1 CoA binding domain ATP-grasp_2 PF08442.10 AHV93826.1 - 0.0016 18.0 0.2 0.0032 17.1 0.2 1.6 1 1 0 1 1 1 1 ATP-grasp domain RimK PF08443.11 AHV93826.1 - 0.0024 17.5 0.0 0.0097 15.5 0.0 2.0 2 0 0 2 2 2 1 RimK-like ATP-grasp domain CPSase_L_D2 PF02786.17 AHV93826.1 - 0.0026 17.3 0.1 0.015 14.8 0.1 2.2 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Kdo PF06293.14 AHV93826.1 - 0.048 13.0 0.1 2.7 7.3 0.0 2.3 2 0 0 2 2 2 0 Lipopolysaccharide kinase (Kdo/WaaP) family MarR PF01047.22 AHV93828.1 - 5.8e-16 58.2 0.1 1.7e-15 56.6 0.0 1.8 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.7 AHV93828.1 - 6.9e-12 45.1 0.8 1.1e-11 44.4 0.3 1.6 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.6 AHV93828.1 - 7.3e-09 36.0 0.1 1.6e-08 34.9 0.0 1.6 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_24 PF13412.6 AHV93828.1 - 0.002 17.7 0.0 0.0036 16.8 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 AHV93828.1 - 0.0025 17.9 1.9 0.0025 17.9 1.9 2.2 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_IclR PF09339.10 AHV93828.1 - 0.0027 17.5 0.1 0.0063 16.3 0.1 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_34 PF13601.6 AHV93828.1 - 0.0033 17.6 0.0 0.0055 16.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain Penicillinase_R PF03965.16 AHV93828.1 - 0.0038 17.6 0.0 0.0084 16.4 0.0 1.6 1 1 1 2 2 2 1 Penicillinase repressor TFIIE_alpha PF02002.17 AHV93828.1 - 0.0072 16.2 0.1 0.012 15.5 0.1 1.4 1 0 0 1 1 1 1 TFIIE alpha subunit TrmB PF01978.19 AHV93828.1 - 0.012 15.5 0.0 0.021 14.7 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HxlR PF01638.17 AHV93828.1 - 0.016 15.0 0.0 0.027 14.3 0.0 1.4 1 1 0 1 1 1 0 HxlR-like helix-turn-helix HTH_47 PF16221.5 AHV93828.1 - 0.046 13.3 0.5 0.15 11.6 0.1 1.9 2 0 0 2 2 2 0 winged helix-turn-helix Rrf2 PF02082.20 AHV93828.1 - 0.083 13.3 0.0 0.16 12.4 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator SpoU_methylase PF00588.19 AHV93829.1 - 2.3e-27 95.9 0.0 3e-27 95.5 0.0 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family Aminotran_1_2 PF00155.21 AHV93830.1 - 1.4e-28 100.2 0.0 1.9e-28 99.7 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II GntR PF00392.21 AHV93830.1 - 2.5e-10 39.8 0.1 7.7e-10 38.3 0.1 1.9 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family Aminotran_5 PF00266.19 AHV93830.1 - 0.0018 17.3 0.0 0.0028 16.7 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_MocR PF12897.7 AHV93830.1 - 0.0041 16.0 0.2 0.015 14.1 0.0 2.0 3 0 0 3 3 3 1 Alanine-glyoxylate amino-transferase MarR_2 PF12802.7 AHV93830.1 - 0.02 14.8 0.1 0.075 12.9 0.1 2.0 1 0 0 1 1 1 0 MarR family Aminotran_3 PF00202.21 AHV93830.1 - 0.043 12.5 0.0 0.076 11.7 0.0 1.3 1 0 0 1 1 1 0 Aminotransferase class-III DegT_DnrJ_EryC1 PF01041.17 AHV93830.1 - 0.079 12.3 0.0 0.16 11.3 0.0 1.4 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family Fer4_11 PF13247.6 AHV93832.1 - 3.6e-24 84.8 8.6 3.6e-24 84.8 8.6 1.8 2 0 0 2 2 2 1 4Fe-4S dicluster domain Form-deh_trans PF09163.11 AHV93832.1 - 1.9e-23 81.9 0.1 3.2e-23 81.2 0.1 1.4 1 0 0 1 1 1 1 Formate dehydrogenase N, transmembrane Fer4_7 PF12838.7 AHV93832.1 - 4.3e-17 62.4 21.4 2.2e-09 37.8 4.1 3.3 2 1 2 4 4 4 4 4Fe-4S dicluster domain Fer4_9 PF13187.6 AHV93832.1 - 2.5e-14 53.2 18.1 7e-07 29.3 1.1 2.7 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 AHV93832.1 - 2e-11 43.8 27.1 0.00011 22.2 12.6 3.8 2 1 2 4 4 4 4 4Fe-4S dicluster domain Fer4_6 PF12837.7 AHV93832.1 - 8.5e-10 38.3 34.2 5.8e-05 23.0 2.7 4.8 4 1 0 4 4 4 4 4Fe-4S binding domain Fer4_2 PF12797.7 AHV93832.1 - 4.6e-09 35.8 28.3 0.00059 19.8 1.2 4.3 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4 PF00037.27 AHV93832.1 - 1.5e-08 34.0 39.0 7.9e-06 25.5 3.2 5.4 6 0 0 6 6 6 3 4Fe-4S binding domain Fer4_21 PF14697.6 AHV93832.1 - 2.3e-07 30.8 27.9 7.4e-06 26.0 8.3 3.7 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 AHV93832.1 - 1.3e-06 29.2 21.8 0.07 14.1 0.0 4.7 3 1 2 5 5 5 4 4Fe-4S double cluster binding domain Fer4_3 PF12798.7 AHV93832.1 - 9e-05 23.1 40.6 0.063 14.2 3.3 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_8 PF13183.6 AHV93832.1 - 0.00058 20.3 27.9 0.01 16.3 6.8 4.0 2 2 2 4 4 4 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 AHV93832.1 - 0.0084 16.5 37.0 0.024 15.1 3.0 4.5 4 1 0 4 4 4 2 4Fe-4S binding domain Fer4_15 PF13459.6 AHV93832.1 - 0.012 16.3 14.6 0.79 10.5 0.3 3.7 3 1 0 3 3 3 0 4Fe-4S single cluster domain Fer4_17 PF13534.6 AHV93832.1 - 0.03 14.9 30.6 3.8 8.1 3.4 4.7 2 2 2 4 4 4 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 AHV93832.1 - 0.082 13.8 0.8 0.082 13.8 0.8 3.8 4 0 0 4 4 4 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 AHV93832.1 - 0.17 12.4 0.6 0.17 12.4 0.6 4.6 4 1 0 4 4 4 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 AHV93832.1 - 0.53 10.5 20.2 0.22 11.7 3.3 4.0 2 1 2 4 4 4 0 4Fe-4S dicluster domain UPF0093 PF03653.13 AHV93833.1 - 1.1e-13 51.6 0.1 1.2e-13 51.6 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0093) Voltage_CLC PF00654.20 AHV93834.1 - 5e-64 216.8 43.5 7.3e-64 216.2 42.6 1.6 1 1 1 2 2 2 1 Voltage gated chloride channel PGI PF00342.19 AHV93835.1 - 1.8e-07 30.1 0.0 2.1e-07 29.9 0.0 1.1 1 0 0 1 1 1 1 Phosphoglucose isomerase CDP-OH_P_transf PF01066.21 AHV93836.1 - 4.1e-16 59.5 1.3 4.1e-16 59.5 1.3 2.4 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase NAD4L PF06235.11 AHV93836.1 - 0.16 12.0 5.1 0.25 11.4 0.3 2.8 3 0 0 3 3 3 0 NADH dehydrogenase subunit 4L (NAD4L) DUF202 PF02656.15 AHV93836.1 - 3.8 8.0 17.8 2.5 8.6 5.0 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF202) Ppx-GppA PF02541.16 AHV93837.1 - 7.6e-68 229.0 0.0 1e-67 228.6 0.0 1.0 1 0 0 1 1 1 1 Ppx/GppA phosphatase family FtsA PF14450.6 AHV93837.1 - 0.11 12.9 1.4 1.4 9.4 0.5 2.4 2 1 0 2 2 2 0 Cell division protein FtsA DDE_Tnp_ISL3 PF01610.17 AHV93838.1 - 7.9e-65 218.9 1.2 1.1e-64 218.4 0.3 1.6 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV93838.1 - 1.4e-11 43.6 0.1 3.6e-11 42.3 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV93838.1 - 5.3e-09 36.6 11.2 1.1e-08 35.6 11.2 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV93838.1 - 0.0056 16.7 0.2 0.016 15.3 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain SLT_L PF14718.6 AHV93838.1 - 0.016 15.3 1.5 0.016 15.3 1.5 1.8 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain NOB1_Zn_bind PF08772.11 AHV93838.1 - 0.017 15.2 0.2 1.2 9.3 0.0 2.5 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-IS66 PF13005.7 AHV93838.1 - 8.2 6.9 9.6 3.6 8.1 6.6 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 BPD_transp_1 PF00528.22 AHV93839.1 - 1.2e-22 80.5 15.1 1.2e-22 80.5 15.1 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF3007 PF11460.8 AHV93839.1 - 0.031 14.5 1.1 0.093 13.0 1.1 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF3007) T2SSF PF00482.23 AHV93840.1 - 1.4e-11 44.4 3.8 1.4e-11 44.4 3.8 1.8 2 0 0 2 2 2 1 Type II secretion system (T2SS), protein F DUF494 PF04361.13 AHV93841.1 - 2.9e-54 183.1 0.0 3.2e-54 182.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF494) DUF520 PF04461.13 AHV93843.1 - 1.5e-59 200.8 4.6 1.6e-59 200.6 4.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF520) NusA_N PF08529.11 AHV93844.1 - 5.5e-38 130.0 0.2 1.7e-37 128.5 0.2 1.9 1 0 0 1 1 1 1 NusA N-terminal domain KH_5 PF13184.6 AHV93844.1 - 6.4e-27 93.4 0.3 6.3e-25 87.1 0.2 2.6 2 0 0 2 2 2 1 NusA-like KH domain HHH_5 PF14520.6 AHV93844.1 - 9.3e-13 48.6 1.6 1.2e-11 45.0 0.4 2.7 2 0 0 2 2 2 1 Helix-hairpin-helix domain S1 PF00575.23 AHV93844.1 - 1.1e-05 25.7 0.1 3.1e-05 24.2 0.1 1.8 1 0 0 1 1 1 1 S1 RNA binding domain DUF4332 PF14229.6 AHV93844.1 - 0.00076 19.7 0.1 0.13 12.5 0.0 2.8 2 1 0 2 2 2 1 Domain of unknown function (DUF4332) KH_2 PF07650.17 AHV93844.1 - 0.0055 16.5 0.1 0.05 13.4 0.0 2.5 2 0 0 2 2 2 1 KH domain S1_2 PF13509.6 AHV93844.1 - 0.026 14.6 0.1 0.23 11.6 0.0 2.3 2 0 0 2 2 2 0 S1 domain Prot_ATP_ID_OB PF16450.5 AHV93844.1 - 0.055 13.4 0.0 0.13 12.2 0.0 1.7 1 0 0 1 1 1 0 Proteasomal ATPase OB C-terminal domain PrlF_antitoxin PF15937.5 AHV93845.1 - 2.2e-37 127.4 0.0 2.6e-37 127.1 0.0 1.0 1 0 0 1 1 1 1 prlF antitoxin for toxin YhaV_toxin 2CSK_N PF08521.10 AHV93845.1 - 0.0047 17.0 0.3 0.0092 16.1 0.3 1.6 1 1 0 1 1 1 1 Two-component sensor kinase N-terminal PCRF PF03462.18 AHV93846.1 - 3.3e-72 242.4 0.0 3.2e-71 239.2 0.0 2.0 2 0 0 2 2 2 1 PCRF domain RF-1 PF00472.20 AHV93846.1 - 2e-42 143.8 0.8 3.6e-42 143.0 0.8 1.4 1 0 0 1 1 1 1 RF-1 domain ABC_tran_CTD PF16326.5 AHV93846.1 - 0.002 18.4 10.9 0.088 13.1 0.0 3.0 3 0 0 3 3 3 2 ABC transporter C-terminal domain DUF1428 PF07237.11 AHV93846.1 - 0.1 12.9 0.1 0.28 11.5 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1428) MIR PF02815.19 AHV93846.1 - 0.15 11.9 0.0 0.3 10.9 0.0 1.5 1 0 0 1 1 1 0 MIR domain FliT PF05400.13 AHV93848.1 - 6.5e-23 81.3 1.9 8.3e-23 81.0 1.9 1.1 1 0 0 1 1 1 1 Flagellar protein FliT TctA PF01970.16 AHV93849.1 - 3.4e-155 516.8 32.3 4.7e-155 516.3 32.3 1.2 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family MscL PF01741.18 AHV93849.1 - 0.061 13.6 0.7 0.54 10.6 0.3 2.7 2 1 0 2 2 2 0 Large-conductance mechanosensitive channel, MscL PP2C_2 PF13672.6 AHV93849.1 - 0.11 12.1 0.5 0.19 11.3 0.5 1.3 1 0 0 1 1 1 0 Protein phosphatase 2C 3HCDH_N PF02737.18 AHV93850.1 - 2.6e-40 138.2 0.0 6.8e-40 136.9 0.0 1.7 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.22 AHV93850.1 - 1.8e-17 63.7 0.0 5.4e-12 46.2 0.0 2.6 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ECH_1 PF00378.20 AHV93850.1 - 6.7e-13 48.5 0.5 1.1e-12 47.8 0.5 1.3 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 AHV93850.1 - 1.9e-11 44.0 1.6 2.6e-11 43.6 0.6 1.6 2 0 0 2 2 2 1 Enoyl-CoA hydratase/isomerase YjeF_N PF03853.15 AHV93850.1 - 0.037 13.9 0.0 0.11 12.3 0.0 1.8 1 0 0 1 1 1 0 YjeF-related protein N-terminus NAD_binding_2 PF03446.15 AHV93850.1 - 0.086 13.0 0.0 2.4 8.3 0.0 2.5 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase Peptidase_S11 PF00768.20 AHV93851.1 - 7.7e-70 235.1 0.0 9.6e-70 234.7 0.0 1.1 1 0 0 1 1 1 1 D-alanyl-D-alanine carboxypeptidase Beta-lactamase2 PF13354.6 AHV93851.1 - 1.6e-14 54.0 0.1 2.5e-14 53.3 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase enzyme family PBP5_C PF07943.13 AHV93851.1 - 6.4e-12 45.5 0.0 1.1e-11 44.8 0.0 1.4 1 0 0 1 1 1 1 Penicillin-binding protein 5, C-terminal domain Beta-lactamase PF00144.24 AHV93851.1 - 2e-06 27.3 4.0 0.0024 17.2 0.0 2.4 1 1 2 3 3 3 2 Beta-lactamase Peptidase_S13 PF02113.15 AHV93851.1 - 4.9e-05 22.2 0.3 8.4e-05 21.5 0.3 1.3 1 0 0 1 1 1 1 D-Ala-D-Ala carboxypeptidase 3 (S13) family ABC_tran PF00005.27 AHV93852.1 - 1.1e-31 110.2 0.0 1.6e-31 109.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 AHV93852.1 - 1.4e-16 61.2 0.3 3.8e-09 36.8 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 AHV93852.1 - 0.0014 18.1 0.0 0.85 9.0 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 AHV93852.1 - 0.0025 18.4 0.0 0.0036 17.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 AHV93852.1 - 0.0088 15.8 0.0 0.02 14.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 AHV93852.1 - 0.018 15.3 0.1 0.094 13.0 0.1 2.0 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 AHV93852.1 - 0.038 14.4 0.1 0.094 13.1 0.1 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA PF00004.29 AHV93852.1 - 0.041 14.3 0.0 0.14 12.6 0.0 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 AHV93852.1 - 0.043 13.5 0.0 0.093 12.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 AHV93852.1 - 0.064 12.9 0.1 0.095 12.3 0.1 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain TsaE PF02367.17 AHV93852.1 - 0.069 13.2 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE RsgA_GTPase PF03193.16 AHV93852.1 - 0.077 12.9 0.1 0.17 11.8 0.0 1.5 2 0 0 2 2 2 0 RsgA GTPase AAA_15 PF13175.6 AHV93852.1 - 0.084 12.6 0.0 2 8.0 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain DLIC PF05783.11 AHV93852.1 - 0.096 11.5 0.0 0.13 11.0 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) AAA_13 PF13166.6 AHV93852.1 - 0.14 10.8 0.0 0.2 10.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 AHV93852.1 - 0.15 12.3 0.1 0.29 11.4 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 AHV93852.1 - 0.18 11.5 0.1 4.2 7.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain DltD PF04914.12 AHV93853.1 - 2.8e-18 66.4 0.0 3.7e-18 66.0 0.0 1.1 1 0 0 1 1 1 1 DltD protein DUF3686 PF12458.8 AHV93853.1 - 0.063 11.8 0.0 0.083 11.4 0.0 1.1 1 0 0 1 1 1 0 ATPase involved in DNA repair TctA PF01970.16 AHV93854.1 - 4.3e-129 430.8 35.2 5.7e-129 430.4 35.2 1.1 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family Cupin_2 PF07883.11 AHV93855.1 - 0.031 14.0 0.0 0.036 13.8 0.0 1.2 1 0 0 1 1 1 0 Cupin domain AhpC-TSA PF00578.21 AHV93856.1 - 1.8e-25 89.3 0.0 2.2e-25 89.0 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 AHV93856.1 - 2.4e-17 63.0 0.1 2.9e-17 62.7 0.1 1.1 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.6 AHV93856.1 - 0.0027 17.8 0.2 0.037 14.1 0.0 2.4 2 1 1 3 3 3 1 AhpC/TSA antioxidant enzyme Peptidase_C30 PF05409.13 AHV93856.1 - 0.16 11.3 0.0 0.22 10.8 0.0 1.2 1 0 0 1 1 1 0 Coronavirus endopeptidase C30 HSP70 PF00012.20 AHV93857.1 - 2.3e-29 102.1 0.0 2.8e-09 35.7 0.0 3.0 2 1 1 3 3 3 3 Hsp70 protein MreB_Mbl PF06723.13 AHV93857.1 - 7.2e-07 28.3 0.0 2.4e-06 26.6 0.0 1.8 3 0 0 3 3 3 1 MreB/Mbl protein StbA PF06406.11 AHV93857.1 - 0.012 14.8 0.0 0.022 14.0 0.0 1.3 1 0 0 1 1 1 0 StbA protein EPSP_synthase PF00275.20 AHV93858.1 - 1.9e-78 264.0 0.0 2.5e-78 263.6 0.0 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DDE_Tnp_ISL3 PF01610.17 AHV93859.1 - 1.1e-17 64.5 0.1 5.2e-17 62.4 0.0 1.8 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV93859.1 - 5.3e-12 45.0 0.1 1.7e-11 43.4 0.1 2.0 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV93859.1 - 3e-09 37.4 11.2 5.4e-09 36.6 11.2 1.4 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV93859.1 - 0.0024 17.9 0.2 0.0081 16.2 0.0 1.9 2 0 0 2 2 2 1 Rhomboid N-terminal domain NOB1_Zn_bind PF08772.11 AHV93859.1 - 0.0056 16.8 0.2 0.64 10.2 0.0 2.4 2 0 0 2 2 2 1 Nin one binding (NOB1) Zn-ribbon like zf-IS66 PF13005.7 AHV93859.1 - 0.29 11.6 6.0 1.1 9.7 6.0 2.1 1 0 0 1 1 1 0 zinc-finger binding domain of transposase IS66 Zn-ribbon_8 PF09723.10 AHV93859.1 - 0.32 11.2 2.7 15 5.8 0.1 2.5 2 0 0 2 2 2 0 Zinc ribbon domain Nudix_N_2 PF14803.6 AHV93859.1 - 0.41 10.6 5.1 8.7 6.4 0.2 3.0 2 0 0 2 2 2 0 Nudix N-terminal rve_3 PF13683.6 AHV93860.1 - 4e-26 90.6 0.1 4.7e-26 90.3 0.1 1.1 1 0 0 1 1 1 1 Integrase core domain rve_2 PF13333.6 AHV93860.1 - 5.8e-08 32.8 0.0 7.4e-08 32.5 0.0 1.1 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AHV93860.1 - 0.003 17.8 0.0 0.0035 17.6 0.0 1.1 1 0 0 1 1 1 1 DDE domain Kinase-PPPase PF03618.14 AHV93861.1 - 2.3e-80 270.0 0.0 2.6e-80 269.9 0.0 1.0 1 0 0 1 1 1 1 Kinase/pyrophosphorylase LPD22 PF18834.1 AHV93861.1 - 0.32 11.2 1.1 1.3 9.2 0.0 2.5 3 1 0 3 3 3 0 Large polyvalent protein associated domain 22 FliL PF03748.14 AHV93862.1 - 1.5e-22 80.1 0.1 2.3e-22 79.5 0.1 1.3 1 0 0 1 1 1 1 Flagellar basal body-associated protein FliL Glyco_hydro_3_C PF01915.22 AHV93862.1 - 0.04 13.9 0.4 8.7 6.2 0.2 2.1 2 0 0 2 2 2 0 Glycosyl hydrolase family 3 C-terminal domain DUF4307 PF14155.6 AHV93862.1 - 0.055 13.3 0.4 0.097 12.5 0.4 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4307) MHYT PF03707.16 AHV93862.1 - 0.11 12.7 1.8 1.4 9.1 0.7 2.4 2 0 0 2 2 2 0 Bacterial signalling protein N terminal repeat TMP_2 PF06791.13 AHV93862.1 - 0.86 9.2 8.1 1.2 8.8 0.3 2.1 2 0 0 2 2 2 0 Prophage tail length tape measure protein GspL_C PF12693.7 AHV93862.1 - 2.5 7.9 8.8 4.3 7.2 2.1 2.1 2 0 0 2 2 2 0 GspL periplasmic domain Metallophos PF00149.28 AHV93863.1 - 4.8e-09 37.0 0.0 8.8e-09 36.2 0.0 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 AHV93863.1 - 1.5e-06 28.5 0.0 1.2e-05 25.5 0.0 2.0 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Glyco_hydro_3_C PF01915.22 AHV93863.1 - 0.031 14.2 0.0 0.039 13.9 0.0 1.1 1 0 0 1 1 1 0 Glycosyl hydrolase family 3 C-terminal domain ABC_tran PF00005.27 AHV93866.1 - 8.5e-27 94.3 0.0 1.2e-26 93.9 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 AHV93866.1 - 4.9e-12 46.3 0.1 8.4e-06 25.8 0.1 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 AHV93866.1 - 8.5e-10 38.4 0.0 2e-08 34.0 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 AHV93866.1 - 0.0019 17.9 0.0 0.004 16.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 AHV93866.1 - 0.0075 16.8 0.0 0.0098 16.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 AHV93866.1 - 0.0094 16.5 0.0 0.053 14.1 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 AHV93866.1 - 0.011 15.9 0.1 0.035 14.2 0.1 2.0 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 AHV93866.1 - 0.015 15.3 0.0 0.037 13.9 0.0 1.6 2 0 0 2 2 2 0 NTPase SbcCD_C PF13558.6 AHV93866.1 - 0.015 15.5 0.1 0.14 12.4 0.1 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_24 PF13479.6 AHV93866.1 - 0.023 14.4 0.0 0.026 14.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 AHV93866.1 - 0.047 13.4 0.0 0.08 12.7 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.14 AHV93866.1 - 0.09 12.8 0.0 0.54 10.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 AHV93866.1 - 0.098 12.9 0.0 0.19 12.0 0.0 1.6 1 1 0 1 1 1 0 AAA domain NSs PF11073.8 AHV93866.1 - 0.1 12.1 0.0 0.14 11.6 0.0 1.2 1 0 0 1 1 1 0 Rift valley fever virus non structural protein (NSs) like DUF87 PF01935.17 AHV93866.1 - 0.12 12.5 0.0 0.19 11.8 0.0 1.2 1 0 0 1 1 1 0 Helicase HerA, central domain AAA_15 PF13175.6 AHV93866.1 - 0.12 12.0 0.0 0.18 11.5 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain Mg_chelatase PF01078.21 AHV93866.1 - 0.13 11.7 0.0 0.29 10.5 0.0 1.6 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI Zeta_toxin PF06414.12 AHV93866.1 - 0.13 11.5 0.0 0.23 10.7 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_13 PF13166.6 AHV93866.1 - 0.14 10.7 0.0 0.3 9.7 0.0 1.5 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 AHV93866.1 - 0.18 11.9 0.1 0.37 10.9 0.1 1.5 1 1 0 1 1 1 0 50S ribosome-binding GTPase PolyA_pol PF01743.20 AHV93867.1 - 8.4e-17 61.8 0.5 4.5e-16 59.4 0.5 2.0 1 1 0 1 1 1 1 Poly A polymerase head domain PolyA_pol_RNAbd PF12627.7 AHV93867.1 - 3.1e-07 30.0 0.0 1.1e-06 28.4 0.0 1.8 2 0 0 2 2 2 1 Probable RNA and SrmB- binding site of polymerase A DDE_Tnp_ISL3 PF01610.17 AHV93868.1 - 7.9e-65 218.9 1.2 1.1e-64 218.4 0.3 1.6 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV93868.1 - 1.4e-11 43.6 0.1 3.6e-11 42.3 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV93868.1 - 5.3e-09 36.6 11.2 1.1e-08 35.6 11.2 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV93868.1 - 0.0056 16.7 0.2 0.016 15.3 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain SLT_L PF14718.6 AHV93868.1 - 0.016 15.3 1.5 0.016 15.3 1.5 1.8 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain NOB1_Zn_bind PF08772.11 AHV93868.1 - 0.017 15.2 0.2 1.2 9.3 0.0 2.5 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-IS66 PF13005.7 AHV93868.1 - 8.2 6.9 9.6 3.6 8.1 6.6 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Leu_Phe_trans PF03588.14 AHV93870.1 - 1.1e-68 230.0 0.0 1.3e-68 229.8 0.0 1.1 1 0 0 1 1 1 1 Leucyl/phenylalanyl-tRNA protein transferase Acetyltransf_6 PF13480.7 AHV93870.1 - 0.00033 20.8 1.1 0.00063 19.9 0.8 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Glycos_transf_3 PF00591.21 AHV93871.1 - 2.8e-91 305.6 3.9 3.7e-91 305.2 3.9 1.1 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 AHV93871.1 - 1.1e-11 44.4 2.0 1e-10 41.3 1.2 2.3 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain NlpE PF04170.12 AHV93872.1 - 0.012 16.5 0.7 0.016 16.1 0.7 1.2 1 0 0 1 1 1 0 NlpE N-terminal domain NDUF_B12 PF08122.12 AHV93873.1 - 0.35 11.0 0.1 0.35 11.0 0.1 2.4 2 0 0 2 2 2 0 NADH-ubiquinone oxidoreductase B12 subunit family TMEM40 PF15817.5 AHV93873.1 - 0.38 10.5 3.1 0.8 9.5 3.1 1.8 1 1 0 1 1 1 0 Transmembrane protein 40 family DUF4118 PF13493.6 AHV93873.1 - 8.2 6.3 12.0 9.4 6.1 6.5 2.8 2 1 0 2 2 2 0 Domain of unknown function (DUF4118) Amidase_3 PF01520.18 AHV93874.1 - 3.1e-48 164.2 0.0 4.5e-48 163.7 0.0 1.3 1 0 0 1 1 1 1 N-acetylmuramoyl-L-alanine amidase AMIN PF11741.8 AHV93874.1 - 8.7e-24 83.5 0.1 1.4e-21 76.5 0.1 2.3 2 0 0 2 2 2 2 AMIN domain Spherulin4 PF12138.8 AHV93874.1 - 0.14 11.7 0.0 0.26 10.9 0.0 1.3 1 0 0 1 1 1 0 Spherulation-specific family 4 G6B PF15096.6 AHV93875.1 - 0.023 14.5 0.1 0.043 13.6 0.1 1.4 1 0 0 1 1 1 0 G6B family Ndc1_Nup PF09531.10 AHV93875.1 - 0.093 11.4 1.0 3.7 6.1 0.0 2.1 1 1 0 2 2 2 0 Nucleoporin protein Ndc1-Nup Zn_ribbon_17 PF17120.5 AHV93875.1 - 0.11 12.2 0.1 0.21 11.2 0.1 1.4 1 0 0 1 1 1 0 Zinc-ribbon, C4HC2 type EOS1 PF12326.8 AHV93875.1 - 0.26 11.2 1.5 0.35 10.8 1.5 1.5 1 1 0 1 1 1 0 N-glycosylation protein DUF1616 PF07760.11 AHV93875.1 - 0.33 10.3 0.0 0.33 10.3 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1616) Herpes_gE PF02480.16 AHV93875.1 - 0.49 9.1 3.2 1.5 7.5 0.0 2.2 2 0 0 2 2 2 0 Alphaherpesvirus glycoprotein E Peptidase_U4 PF03419.13 AHV93875.1 - 0.91 8.8 6.5 0.4 9.9 2.4 2.0 2 0 0 2 2 2 0 Sporulation factor SpoIIGA DUF1345 PF07077.11 AHV93875.1 - 1.4 8.6 8.9 2 8.1 4.1 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF1345) Peripla_BP_6 PF13458.6 AHV93876.1 - 2e-50 172.4 8.0 2.5e-50 172.1 8.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.28 AHV93876.1 - 2.9e-20 72.7 0.0 1.1e-19 70.8 0.0 1.8 2 0 0 2 2 2 1 Receptor family ligand binding region Peripla_BP_5 PF13433.6 AHV93876.1 - 1.1e-11 44.3 2.0 1.1e-10 41.0 2.1 2.3 1 1 0 1 1 1 1 Periplasmic binding protein domain AzlC PF03591.14 AHV93877.1 - 5.3e-31 107.9 13.1 5.3e-31 107.9 13.1 1.9 2 1 0 2 2 2 1 AzlC protein Ldr_toxin PF13940.6 AHV93877.1 - 0.48 10.5 4.5 2.2 8.4 0.4 2.7 2 0 0 2 2 2 0 Toxin Ldr, type I toxin-antitoxin system SBP_bac_5 PF00496.22 AHV93878.1 - 2.3e-87 293.4 0.3 2.8e-87 293.1 0.3 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Methyltransf_11 PF08241.12 AHV93879.1 - 1.2e-24 86.8 0.0 1.8e-24 86.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 AHV93879.1 - 3.2e-23 82.3 0.0 4.7e-23 81.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 AHV93879.1 - 9.8e-20 70.9 0.0 1.2e-19 70.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 AHV93879.1 - 1.8e-16 60.2 0.0 2.2e-16 59.9 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 AHV93879.1 - 9.4e-15 55.2 0.0 1.3e-14 54.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 AHV93879.1 - 4.3e-14 52.7 0.0 5.4e-14 52.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.15 AHV93879.1 - 1.2e-05 25.2 0.0 0.00015 21.7 0.0 2.0 1 1 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_29 PF03141.16 AHV93879.1 - 2e-05 23.3 0.0 2.4e-05 23.1 0.0 1.0 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase DREV PF05219.12 AHV93879.1 - 9.7e-05 21.6 0.0 0.00011 21.4 0.0 1.1 1 0 0 1 1 1 1 DREV methyltransferase MTS PF05175.14 AHV93879.1 - 0.00013 21.5 0.0 0.00023 20.7 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase small domain TehB PF03848.14 AHV93879.1 - 0.001 18.5 0.0 0.0012 18.3 0.0 1.1 1 0 0 1 1 1 1 Tellurite resistance protein TehB MetW PF07021.12 AHV93879.1 - 0.0018 17.9 0.0 0.0022 17.6 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_32 PF13679.6 AHV93879.1 - 0.0061 16.6 0.0 0.0088 16.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 AHV93879.1 - 0.0088 15.4 0.0 0.011 15.1 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PrmA PF06325.13 AHV93879.1 - 0.016 14.6 0.1 0.021 14.2 0.1 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_4 PF02390.17 AHV93879.1 - 0.075 12.5 0.0 0.23 10.9 0.0 1.7 2 0 0 2 2 2 0 Putative methyltransferase RrnaAD PF00398.20 AHV93879.1 - 0.12 11.4 0.0 0.16 11.0 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase tRNA_U5-meth_tr PF05958.11 AHV93879.1 - 0.23 10.4 0.0 0.28 10.1 0.0 1.1 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase 2-oxoacid_dh PF00198.23 AHV93880.1 - 4.9e-81 271.6 0.0 6.6e-81 271.2 0.0 1.1 1 0 0 1 1 1 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Biotin_lipoyl PF00364.22 AHV93880.1 - 3.1e-19 68.6 5.8 6e-19 67.6 5.8 1.4 1 0 0 1 1 1 1 Biotin-requiring enzyme E3_binding PF02817.17 AHV93880.1 - 2.4e-15 56.6 0.2 2.4e-15 56.6 0.2 2.4 2 0 0 2 2 2 1 e3 binding domain Biotin_lipoyl_2 PF13533.6 AHV93880.1 - 0.0011 18.8 4.0 0.0022 17.8 1.2 2.4 1 1 1 2 2 2 1 Biotin-lipoyl like CAT PF00302.18 AHV93880.1 - 0.022 14.7 0.0 0.043 13.8 0.0 1.4 1 0 0 1 1 1 0 Chloramphenicol acetyltransferase GCV_H PF01597.19 AHV93880.1 - 0.039 13.8 0.6 0.085 12.7 0.6 1.5 1 0 0 1 1 1 0 Glycine cleavage H-protein HlyD_3 PF13437.6 AHV93880.1 - 0.16 12.7 2.3 0.24 12.1 0.5 2.1 1 1 1 2 2 2 0 HlyD family secretion protein RnfC_N PF13375.6 AHV93880.1 - 0.19 11.7 2.2 3 7.9 1.8 2.4 1 1 1 2 2 2 0 RnfC Barrel sandwich hybrid domain Ala_racemase_N PF01168.20 AHV93881.1 - 9.5e-19 67.9 0.0 1.3e-18 67.5 0.0 1.1 1 0 0 1 1 1 1 Alanine racemase, N-terminal domain GGACT PF06094.12 AHV93881.1 - 3.7e-16 59.8 0.0 6.2e-16 59.1 0.0 1.4 1 0 0 1 1 1 1 Gamma-glutamyl cyclotransferase, AIG2-like AIG2_2 PF13772.6 AHV93881.1 - 0.024 15.0 0.0 0.042 14.3 0.0 1.3 1 0 0 1 1 1 0 AIG2-like family FapA PF03961.13 AHV93883.1 - 5.8e-107 358.1 0.0 7.1e-107 357.8 0.0 1.0 1 0 0 1 1 1 1 Flagellar Assembly Protein A MinC_C PF03775.16 AHV93883.1 - 0.017 15.1 5.0 0.017 15.1 5.0 2.3 3 1 0 3 3 3 0 Septum formation inhibitor MinC, C-terminal domain Bactofilin PF04519.13 AHV93883.1 - 0.021 15.1 4.9 0.066 13.5 4.7 1.9 1 1 0 1 1 1 0 Polymer-forming cytoskeletal FeS_assembly_P PF01883.19 AHV93884.1 - 2.3e-13 50.1 0.2 3.8e-13 49.4 0.2 1.4 1 0 0 1 1 1 1 Iron-sulfur cluster assembly protein Zn-ribbon_8 PF09723.10 AHV93884.1 - 0.024 14.7 0.1 0.047 13.8 0.1 1.5 1 0 0 1 1 1 0 Zinc ribbon domain Peptidase_A24 PF01478.18 AHV93885.1 - 1.9e-06 28.3 4.0 1.9e-06 28.3 4.0 1.6 2 0 0 2 2 2 1 Type IV leader peptidase family Trigger_N PF05697.13 AHV93886.1 - 3.7e-36 124.5 0.1 3.7e-36 124.5 0.1 2.9 4 0 0 4 4 4 1 Bacterial trigger factor protein (TF) Trigger_C PF05698.14 AHV93886.1 - 1.2e-32 113.2 8.5 1.2e-32 113.2 8.5 2.7 3 0 0 3 3 3 1 Bacterial trigger factor protein (TF) C-terminus FKBP_C PF00254.28 AHV93886.1 - 3.9e-13 49.5 0.1 4.2e-12 46.2 0.1 2.4 2 0 0 2 2 2 1 FKBP-type peptidyl-prolyl cis-trans isomerase Turandot PF07240.11 AHV93886.1 - 0.091 12.7 1.5 0.76 9.8 0.1 2.7 3 0 0 3 3 3 0 Stress-inducible humoral factor Turandot IstB_IS21 PF01695.17 AHV93888.1 - 5.2e-63 212.0 0.1 6.8e-63 211.6 0.1 1.1 1 0 0 1 1 1 1 IstB-like ATP binding protein Bac_DnaA PF00308.18 AHV93888.1 - 2.5e-07 30.8 0.0 3.4e-07 30.3 0.0 1.1 1 0 0 1 1 1 1 Bacterial dnaA protein AAA PF00004.29 AHV93888.1 - 2.1e-06 28.2 0.0 3.7e-06 27.4 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 AHV93888.1 - 2.8e-06 27.8 0.4 0.00017 22.0 0.4 2.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 AHV93888.1 - 4e-05 23.9 0.0 0.023 15.0 0.0 2.5 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.14 AHV93888.1 - 5.2e-05 23.3 0.0 0.00018 21.5 0.0 1.8 1 1 1 2 2 2 1 AAA domain (dynein-related subfamily) RsgA_GTPase PF03193.16 AHV93888.1 - 0.00011 22.2 0.0 0.00027 20.9 0.0 1.7 2 0 0 2 2 2 1 RsgA GTPase AAA_14 PF13173.6 AHV93888.1 - 0.0003 20.8 0.0 0.00069 19.7 0.0 1.6 2 0 0 2 2 2 1 AAA domain PhoH PF02562.16 AHV93888.1 - 0.002 17.6 0.1 0.0033 16.9 0.1 1.4 1 0 0 1 1 1 1 PhoH-like protein AAA_28 PF13521.6 AHV93888.1 - 0.0051 17.1 0.0 0.0088 16.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain TniB PF05621.11 AHV93888.1 - 0.0091 15.4 0.0 4.4 6.7 0.0 2.3 1 1 1 2 2 2 2 Bacterial TniB protein ABC_tran PF00005.27 AHV93888.1 - 0.0095 16.5 0.0 0.026 15.0 0.0 1.6 1 1 0 1 1 1 1 ABC transporter AAA_18 PF13238.6 AHV93888.1 - 0.011 16.3 0.0 0.025 15.1 0.0 1.9 1 1 0 1 1 1 0 AAA domain Lon_2 PF13337.6 AHV93888.1 - 0.015 13.9 0.0 0.022 13.3 0.0 1.2 1 0 0 1 1 1 0 Putative ATP-dependent Lon protease AAA_33 PF13671.6 AHV93888.1 - 0.016 15.3 0.0 0.037 14.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 AHV93888.1 - 0.02 14.6 0.0 0.043 13.5 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain RNA_helicase PF00910.22 AHV93888.1 - 0.022 15.2 0.0 0.049 14.0 0.0 1.7 1 1 0 1 1 1 0 RNA helicase AAA_7 PF12775.7 AHV93888.1 - 0.027 14.0 0.0 0.094 12.2 0.0 1.9 2 1 0 2 2 2 0 P-loop containing dynein motor region Sigma54_activat PF00158.26 AHV93888.1 - 0.04 13.6 0.0 0.1 12.3 0.0 1.8 1 1 0 1 1 1 0 Sigma-54 interaction domain AAA_17 PF13207.6 AHV93888.1 - 0.041 14.3 0.0 0.19 12.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain DUF3572 PF12096.8 AHV93888.1 - 0.046 13.9 0.8 0.13 12.5 0.3 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3572) AAA_25 PF13481.6 AHV93888.1 - 0.058 13.0 0.0 0.36 10.4 0.0 2.0 1 1 1 2 2 2 0 AAA domain AAA_2 PF07724.14 AHV93888.1 - 0.078 13.1 0.0 0.18 11.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) Viral_helicase1 PF01443.18 AHV93888.1 - 0.12 12.1 0.0 0.17 11.6 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase NACHT PF05729.12 AHV93888.1 - 0.12 12.3 0.1 0.33 10.9 0.0 1.8 1 1 0 1 1 1 0 NACHT domain AAA_10 PF12846.7 AHV93888.1 - 0.14 11.1 0.0 0.2 10.5 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain AAA_24 PF13479.6 AHV93888.1 - 0.14 11.8 0.0 0.28 10.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain Roc PF08477.13 AHV93888.1 - 0.15 12.3 0.0 0.31 11.3 0.0 1.6 1 1 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase DUF188 PF02639.14 AHV93889.1 - 2.5e-50 169.5 0.0 2.9e-50 169.3 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized BCR, YaiI/YqxD family COG1671 adh_short_C2 PF13561.6 AHV93890.1 - 3.6e-38 131.4 3.5 7.9e-38 130.3 3.5 1.5 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 AHV93890.1 - 3.7e-23 82.0 3.1 1.4e-21 76.8 3.1 2.0 1 1 0 1 1 1 1 short chain dehydrogenase 2-Hacid_dh_C PF02826.19 AHV93890.1 - 0.018 14.4 0.0 0.032 13.6 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KR PF08659.10 AHV93890.1 - 0.03 14.2 0.2 0.062 13.2 0.2 1.6 1 1 0 1 1 1 0 KR domain Maf PF02545.14 AHV93891.1 - 1.1e-26 93.7 0.0 1.2e-26 93.6 0.0 1.0 1 0 0 1 1 1 1 Maf-like protein HIT PF01230.23 AHV93892.1 - 2.7e-11 44.1 0.1 4e-11 43.5 0.1 1.3 1 0 0 1 1 1 1 HIT domain TctC PF03401.14 AHV93893.1 - 8.8e-66 221.8 0.1 1.1e-65 221.4 0.1 1.1 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor MurJ PF03023.14 AHV93894.1 - 1.3e-22 80.1 9.7 1.6e-22 79.7 9.7 1.0 1 0 0 1 1 1 1 Lipid II flippase MurJ Polysacc_synt_C PF14667.6 AHV93894.1 - 4.8e-10 39.6 6.4 4.8e-10 39.6 6.4 2.6 2 1 0 2 2 2 1 Polysaccharide biosynthesis C-terminal domain MatE PF01554.18 AHV93894.1 - 1.9e-05 24.4 9.6 1.9e-05 24.4 9.6 1.5 2 0 0 2 2 2 1 MatE PUCC PF03209.15 AHV93894.1 - 0.00029 20.0 5.9 0.00055 19.0 5.7 1.6 1 1 0 1 1 1 1 PUCC protein DUF2070 PF09843.9 AHV93894.1 - 0.052 11.8 4.9 0.058 11.7 4.9 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) DUF834 PF05754.14 AHV93895.1 - 0.38 10.8 1.7 25 5.0 0.4 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF834) Ribosomal_L10 PF00466.20 AHV93896.1 - 9e-22 77.1 0.0 1.3e-21 76.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L10 FliH PF02108.16 AHV93897.1 - 2.9e-36 124.4 0.1 3.7e-36 124.0 0.1 1.1 1 0 0 1 1 1 1 Flagellar assembly protein FliH Yae1_N PF09811.9 AHV93897.1 - 1.4e-05 24.7 11.1 0.002 17.8 4.5 2.4 1 1 1 2 2 2 2 Essential protein Yae1, N terminal DUF1622 PF07784.11 AHV93897.1 - 0.095 12.6 0.2 0.19 11.7 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1622) AhpC-TSA PF00578.21 AHV93898.1 - 1.1e-34 119.0 0.0 1.4e-34 118.6 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 AHV93898.1 - 3.2e-17 62.6 0.0 4.4e-17 62.2 0.0 1.2 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.9 AHV93898.1 - 3.9e-12 45.8 0.0 6.7e-12 45.0 0.0 1.4 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin Thioredoxin_8 PF13905.6 AHV93898.1 - 0.013 15.8 0.0 0.021 15.1 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin-like AhpC-TSA_2 PF13911.6 AHV93898.1 - 0.084 13.0 0.0 0.11 12.6 0.0 1.3 1 0 0 1 1 1 0 AhpC/TSA antioxidant enzyme PK_C PF02887.16 AHV93898.1 - 0.12 12.6 0.0 0.21 11.8 0.0 1.5 1 1 0 1 1 1 0 Pyruvate kinase, alpha/beta domain Autotransporter PF03797.19 AHV93899.1 - 1.1e-45 156.3 21.3 1.1e-45 156.3 21.3 4.4 4 2 1 5 5 5 1 Autotransporter beta-domain PATR PF12951.7 AHV93899.1 - 0.00027 21.0 0.1 0.00027 21.0 0.1 8.6 7 2 1 8 8 8 5 Passenger-associated-transport-repeat DUF3575 PF12099.8 AHV93899.1 - 0.011 15.1 1.3 0.029 13.7 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3575) tRNA_edit PF04073.15 AHV93900.1 - 4.5e-24 84.9 0.1 5.2e-24 84.7 0.1 1.1 1 0 0 1 1 1 1 Aminoacyl-tRNA editing domain TctC PF03401.14 AHV93901.1 - 5.3e-47 160.2 0.0 6.3e-47 159.9 0.0 1.1 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor ABC_tran PF00005.27 AHV93902.1 - 2.5e-31 109.0 0.0 3.5e-31 108.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 AHV93902.1 - 9.8e-11 42.0 3.5 2.9e-06 27.3 0.2 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 AHV93902.1 - 0.0014 19.2 0.1 0.002 18.7 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 AHV93902.1 - 0.0022 17.7 0.1 0.0051 16.5 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 AHV93902.1 - 0.011 16.1 0.1 0.02 15.3 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain SbcCD_C PF13558.6 AHV93902.1 - 0.013 15.7 0.3 0.4 11.0 0.3 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit cobW PF02492.19 AHV93902.1 - 0.028 14.0 0.0 0.038 13.6 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain DUF3584 PF12128.8 AHV93902.1 - 0.029 11.9 0.2 0.035 11.6 0.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) MMR_HSR1 PF01926.23 AHV93902.1 - 0.029 14.4 0.0 0.036 14.2 0.0 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase SMC_N PF02463.19 AHV93902.1 - 0.034 13.6 0.1 2.6 7.4 0.1 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 AHV93902.1 - 0.042 13.7 0.1 0.084 12.8 0.0 1.5 2 0 0 2 2 1 0 RsgA GTPase AAA_22 PF13401.6 AHV93902.1 - 0.043 14.1 0.5 0.43 10.9 0.5 2.1 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.6 AHV93902.1 - 0.045 13.5 0.1 0.071 12.8 0.1 1.3 1 0 0 1 1 1 0 AAA ATPase domain AAA_25 PF13481.6 AHV93902.1 - 0.05 13.2 0.0 0.13 11.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 AHV93902.1 - 0.062 13.2 0.1 0.22 11.4 0.1 1.8 2 0 0 2 2 2 0 NACHT domain VirC1 PF07015.11 AHV93902.1 - 0.062 12.6 0.0 0.11 11.8 0.0 1.3 1 0 0 1 1 1 0 VirC1 protein AAA_33 PF13671.6 AHV93902.1 - 0.084 13.0 0.1 0.27 11.4 0.0 1.9 2 1 0 2 2 2 0 AAA domain NB-ARC PF00931.22 AHV93902.1 - 0.12 11.6 0.1 0.33 10.1 0.1 1.7 2 0 0 2 2 2 0 NB-ARC domain ABC_ATPase PF09818.9 AHV93902.1 - 0.25 10.1 0.8 18 3.9 0.4 2.7 2 1 0 2 2 2 0 Predicted ATPase of the ABC class EamA PF00892.20 AHV93903.1 - 1.3e-26 93.4 33.0 1.3e-13 51.3 14.0 2.0 2 0 0 2 2 2 2 EamA-like transporter family NADH_dh_m_C1 PF15088.6 AHV93903.1 - 0.19 11.4 1.8 6.5 6.5 0.1 3.2 3 0 0 3 3 3 0 NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial LPAM_1 PF08139.12 AHV93904.1 - 0.41 11.2 2.0 1.1 9.9 2.0 1.8 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site Lactamase_B PF00753.27 AHV93905.1 - 1.2e-11 45.1 0.3 1.3e-11 44.8 0.3 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 AHV93905.1 - 0.0043 16.6 0.3 0.0066 16.0 0.3 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Proteasome PF00227.26 AHV93906.1 - 0.0035 16.9 0.0 0.011 15.2 0.0 1.7 1 1 0 1 1 1 1 Proteasome subunit rve PF00665.26 AHV93907.1 - 1.4e-28 99.5 0.0 2.2e-28 98.8 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.6 AHV93907.1 - 1.6e-25 88.6 0.9 3.5e-25 87.6 0.9 1.6 1 0 0 1 1 1 1 Integrase core domain HTH_21 PF13276.6 AHV93907.1 - 9.3e-05 22.5 0.5 0.00022 21.3 0.4 1.7 2 0 0 2 2 2 1 HTH-like domain rve_2 PF13333.6 AHV93907.1 - 0.027 14.7 2.3 0.043 14.0 0.1 2.4 2 0 0 2 2 2 0 Integrase core domain Transgly PF00912.22 AHV93908.1 - 1e-25 90.2 0.0 1.9e-25 89.4 0.0 1.5 2 0 0 2 2 2 1 Transglycosylase Transpeptidase PF00905.22 AHV93908.1 - 5.9e-15 55.2 0.0 2.7e-14 53.1 0.0 1.8 1 1 0 1 1 1 1 Penicillin binding protein transpeptidase domain PDH PF02153.17 AHV93909.1 - 1.4e-68 230.7 0.0 1.6e-68 230.5 0.0 1.0 1 0 0 1 1 1 1 Prephenate dehydrogenase F420_oxidored PF03807.17 AHV93909.1 - 1.2e-07 32.2 0.4 3.9e-07 30.5 0.1 2.0 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 AHV93909.1 - 3.2e-07 30.6 0.2 5.9e-07 29.8 0.2 1.5 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.16 AHV93909.1 - 2.9e-05 23.8 0.5 0.00011 21.9 0.5 1.9 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA 2-Hacid_dh_C PF02826.19 AHV93909.1 - 0.00085 18.7 0.0 0.0043 16.4 0.0 2.2 3 0 0 3 3 3 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 AHV93909.1 - 0.0049 16.5 0.1 0.0086 15.7 0.1 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain TrkA_N PF02254.18 AHV93909.1 - 0.018 15.3 0.1 0.062 13.6 0.1 2.0 1 1 0 1 1 1 0 TrkA-N domain ADH_zinc_N PF00107.26 AHV93909.1 - 0.042 13.8 1.2 0.11 12.5 0.3 2.1 2 1 0 2 2 2 0 Zinc-binding dehydrogenase 3HCDH_N PF02737.18 AHV93909.1 - 0.4 10.5 1.5 2.5 8.0 0.4 2.2 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LysR_substrate PF03466.20 AHV93911.1 - 6.3e-56 189.0 2.0 1.1e-55 188.3 2.0 1.3 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 AHV93911.1 - 3e-17 62.3 0.7 1.3e-16 60.3 1.2 1.7 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family AMNp_N PF10423.9 AHV93911.1 - 0.11 12.1 0.0 0.93 9.1 0.0 2.1 2 0 0 2 2 2 0 Bacterial AMP nucleoside phosphorylase N-terminus DUF2889 PF11136.8 AHV93912.1 - 1.1e-40 138.8 0.0 1.3e-40 138.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2889) FAD_binding_3 PF01494.19 AHV93913.1 - 6.6e-13 48.6 0.1 6.8e-13 48.6 0.1 1.1 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.24 AHV93913.1 - 6.7e-07 29.2 1.0 8.6e-07 28.8 1.0 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 AHV93913.1 - 1.3e-05 24.6 0.1 0.049 12.9 0.1 2.1 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 AHV93913.1 - 0.00013 20.8 0.7 0.24 10.0 0.0 2.1 2 0 0 2 2 2 2 HI0933-like protein NAD_binding_8 PF13450.6 AHV93913.1 - 0.00026 21.2 1.9 0.00092 19.4 0.4 2.2 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 AHV93913.1 - 0.0029 16.7 0.8 0.0045 16.1 0.8 1.2 1 0 0 1 1 1 1 FAD binding domain Amino_oxidase PF01593.24 AHV93913.1 - 0.0095 15.3 0.1 0.7 9.1 0.0 2.1 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase Lycopene_cycl PF05834.12 AHV93913.1 - 0.011 14.8 1.1 0.024 13.7 1.1 1.5 1 1 0 1 1 1 0 Lycopene cyclase protein Pyr_redox_3 PF13738.6 AHV93913.1 - 0.013 14.8 0.0 0.28 10.4 0.0 2.0 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 AHV93913.1 - 0.014 14.6 0.5 0.021 14.1 0.5 1.2 1 0 0 1 1 1 0 Thi4 family Pyr_redox PF00070.27 AHV93913.1 - 0.022 15.3 0.1 0.3 11.7 0.1 2.2 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 AHV93913.1 - 0.053 12.9 0.0 0.066 12.5 0.0 1.1 1 0 0 1 1 1 0 FAD dependent oxidoreductase GIDA PF01134.22 AHV93913.1 - 0.2 10.7 0.6 0.35 9.9 0.6 1.3 1 1 0 1 1 1 0 Glucose inhibited division protein A Trp_halogenase PF04820.14 AHV93913.1 - 0.22 10.3 2.8 0.95 8.2 0.0 2.0 2 0 0 2 2 2 0 Tryptophan halogenase ApbA PF02558.16 AHV93913.1 - 0.26 10.9 0.5 0.48 10.1 0.5 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA PhaG_MnhG_YufB PF03334.14 AHV93914.1 - 8.6e-21 74.0 10.8 1e-20 73.7 10.8 1.1 1 0 0 1 1 1 1 Na+/H+ antiporter subunit Mg_trans_NIPA PF05653.14 AHV93914.1 - 0.065 12.3 2.5 0.075 12.1 2.5 1.1 1 0 0 1 1 1 0 Magnesium transporter NIPA DUF5326 PF17260.2 AHV93914.1 - 4.8 7.4 9.9 0.16 12.1 1.9 2.3 1 1 1 2 2 2 0 Family of unknown function (DUF5326) GlcNAc_2-epim PF07221.11 AHV93915.1 - 1.8e-30 106.4 2.9 3.2e-30 105.6 2.9 1.4 1 1 0 1 1 1 1 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) Acyl-CoA_dh_1 PF00441.24 AHV93916.1 - 4.1e-33 114.7 7.8 4.1e-33 114.7 7.8 2.3 2 1 1 3 3 3 1 Acyl-CoA dehydrogenase, C-terminal domain AidB_N PF18158.1 AHV93916.1 - 2.2e-18 66.7 0.1 2.2e-18 66.7 0.1 2.3 3 0 0 3 3 3 1 Adaptive response protein AidB N-terminal domain Acyl-CoA_dh_M PF02770.19 AHV93916.1 - 2.1e-17 63.1 0.0 3.6e-17 62.3 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 AHV93916.1 - 2.6e-10 40.7 3.5 2.6e-10 40.7 3.5 2.3 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Fer2_3 PF13085.6 AHV93917.1 - 5.5e-34 116.4 0.0 8.7e-34 115.8 0.0 1.3 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_17 PF13534.6 AHV93917.1 - 1.9e-10 41.1 1.8 3.7e-10 40.2 1.8 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 AHV93917.1 - 3.2e-09 37.1 3.0 1.5e-08 35.0 3.1 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 AHV93917.1 - 5e-08 32.9 1.9 9.6e-08 32.0 1.9 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 AHV93917.1 - 0.0017 18.5 4.8 0.0017 18.5 4.8 2.4 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 AHV93917.1 - 0.0018 18.8 7.5 0.0094 16.5 7.0 2.4 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 AHV93917.1 - 0.0036 17.5 0.5 1.5 9.1 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 AHV93917.1 - 0.082 13.4 7.8 1.8 9.3 1.9 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.6 AHV93917.1 - 1.4 9.9 10.7 6.4 7.8 1.0 2.4 1 1 2 3 3 3 0 4Fe-4S double cluster binding domain Fer4 PF00037.27 AHV93917.1 - 2.1 8.3 14.8 1.1 9.2 0.9 2.8 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.7 AHV93917.1 - 8.3 6.7 11.5 1.9 8.7 0.6 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain TmoB PF06234.12 AHV93918.1 - 1.4e-30 105.2 0.7 1.6e-30 105.0 0.7 1.0 1 0 0 1 1 1 1 Toluene-4-monooxygenase system protein B (TmoB) bMG10 PF17973.1 AHV93918.1 - 0.051 13.8 0.1 0.44 10.7 0.0 1.9 1 1 1 2 2 2 0 Bacterial Alpha-2-macroglobulin MG10 domain ubiquitin PF00240.23 AHV93918.1 - 0.14 11.9 0.0 0.17 11.7 0.0 1.3 1 0 0 1 1 1 0 Ubiquitin family LZ_Tnp_IS481 PF13011.6 AHV93919.1 - 2.3e-22 79.3 2.6 4.6e-20 71.9 0.4 2.3 1 1 1 2 2 2 1 leucine-zipper of insertion element IS481 HTH_23 PF13384.6 AHV93919.1 - 2.6e-17 62.1 4.4 6.1e-08 32.2 0.1 2.3 2 0 0 2 2 2 2 Homeodomain-like domain HTH_28 PF13518.6 AHV93919.1 - 1.3e-16 60.4 2.6 2.9e-11 43.3 0.1 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_29 PF13551.6 AHV93919.1 - 3.9e-12 46.0 0.6 1.3e-06 28.3 0.0 2.3 2 0 0 2 2 2 2 Winged helix-turn helix HTH_32 PF13565.6 AHV93919.1 - 2.3e-11 44.1 0.7 4.3e-11 43.3 0.7 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_38 PF13936.6 AHV93919.1 - 2.1e-06 27.4 1.8 4.5e-06 26.3 1.1 1.9 2 1 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 AHV93919.1 - 4.2e-06 26.5 3.4 5e-05 23.1 1.2 2.3 2 0 0 2 2 2 1 MarR family HTH_Tnp_ISL3 PF13542.6 AHV93919.1 - 5.9e-06 25.6 1.9 0.0011 18.4 0.6 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 Sigma70_r4_2 PF08281.12 AHV93919.1 - 1.2e-05 24.9 0.1 0.0035 17.0 0.3 2.3 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 AHV93919.1 - 2.3e-05 23.8 0.1 0.00031 20.2 0.2 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 YdaS_antitoxin PF15943.5 AHV93919.1 - 9.9e-05 22.1 0.3 0.13 12.1 0.0 2.6 2 0 0 2 2 2 2 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_24 PF13412.6 AHV93919.1 - 0.00012 21.5 0.2 0.0012 18.4 0.3 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_3 PF01381.22 AHV93919.1 - 0.00013 22.0 0.7 0.0076 16.3 0.3 2.4 2 0 0 2 2 2 1 Helix-turn-helix HTH_Crp_2 PF13545.6 AHV93919.1 - 0.0002 21.3 0.4 0.0015 18.5 0.2 2.2 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_31 PF13560.6 AHV93919.1 - 0.00027 21.2 6.9 0.0014 18.9 2.8 2.9 2 2 0 2 2 2 1 Helix-turn-helix domain Trp_repressor PF01371.19 AHV93919.1 - 0.00036 20.6 0.2 0.0033 17.5 0.1 2.0 2 0 0 2 2 2 1 Trp repressor protein LacI PF00356.21 AHV93919.1 - 0.00049 19.8 1.2 0.0027 17.5 0.7 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family CENP-B_N PF04218.13 AHV93919.1 - 0.00051 19.6 0.0 0.88 9.2 0.1 2.3 2 0 0 2 2 2 2 CENP-B N-terminal DNA-binding domain HTH_5 PF01022.20 AHV93919.1 - 0.00067 19.5 0.0 0.5 10.3 0.0 2.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.19 AHV93919.1 - 0.00069 19.8 0.0 0.018 15.2 0.0 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain SpoIIID PF12116.8 AHV93919.1 - 0.00094 19.2 0.0 0.54 10.4 0.0 2.2 2 0 0 2 2 2 1 Stage III sporulation protein D HTH_IclR PF09339.10 AHV93919.1 - 0.00099 18.9 1.6 0.019 14.7 0.7 2.5 2 0 0 2 2 2 1 IclR helix-turn-helix domain RepB PF07506.11 AHV93919.1 - 0.0011 19.1 0.2 0.21 11.6 0.1 2.3 1 1 1 2 2 2 1 RepB plasmid partitioning protein HTH_11 PF08279.12 AHV93919.1 - 0.0014 18.5 0.5 0.008 16.1 0.5 2.1 2 0 0 2 2 2 1 HTH domain HTH_psq PF05225.16 AHV93919.1 - 0.0016 18.1 0.5 1.3 8.8 0.5 2.3 2 0 0 2 2 2 1 helix-turn-helix, Psq domain GntR PF00392.21 AHV93919.1 - 0.0021 17.6 0.8 0.28 10.8 0.4 2.4 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_AsnC-type PF13404.6 AHV93919.1 - 0.0023 17.7 3.1 0.03 14.2 1.4 2.6 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_Tnp_1 PF01527.20 AHV93919.1 - 0.0025 18.1 0.4 0.052 13.9 0.0 2.2 1 1 1 2 2 2 1 Transposase HTH_17 PF12728.7 AHV93919.1 - 0.003 17.7 0.1 3.5 7.9 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_10 PF04967.12 AHV93919.1 - 0.0047 16.7 0.1 0.028 14.2 0.2 2.0 2 0 0 2 2 2 1 HTH DNA binding domain HTH_35 PF13693.6 AHV93919.1 - 0.0051 16.8 0.9 0.038 14.0 0.6 2.2 1 1 1 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_30 PF13556.6 AHV93919.1 - 0.0058 16.4 0.1 0.97 9.3 0.0 2.3 2 0 0 2 2 2 1 PucR C-terminal helix-turn-helix domain UPF0175 PF03683.13 AHV93919.1 - 0.0061 16.2 0.4 0.052 13.3 0.1 2.2 2 1 1 3 3 2 1 Uncharacterised protein family (UPF0175) HTH_37 PF13744.6 AHV93919.1 - 0.0076 16.2 0.1 0.065 13.2 0.1 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Tnp_4 PF13613.6 AHV93919.1 - 0.0098 15.6 0.1 0.038 13.7 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix of DDE superfamily endonuclease Crp PF00325.20 AHV93919.1 - 0.015 15.0 1.5 0.036 13.7 0.5 2.1 2 0 0 2 2 2 0 Bacterial regulatory proteins, crp family HTH_36 PF13730.6 AHV93919.1 - 0.016 15.1 0.0 0.32 11.0 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain MerR PF00376.23 AHV93919.1 - 0.017 14.9 1.3 1.9 8.3 0.0 2.8 3 0 0 3 3 2 0 MerR family regulatory protein MarR PF01047.22 AHV93919.1 - 0.02 14.8 0.1 0.08 12.9 0.1 2.0 2 0 0 2 2 2 0 MarR family P22_Cro PF14549.6 AHV93919.1 - 0.027 14.3 2.0 5.1 7.0 0.1 2.3 2 0 0 2 2 2 0 DNA-binding transcriptional regulator Cro DUF746 PF05344.11 AHV93919.1 - 0.036 13.9 0.1 0.54 10.1 0.0 2.2 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) HTH_1 PF00126.27 AHV93919.1 - 0.046 13.7 3.0 2.7 8.0 0.5 2.4 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_DeoR PF08220.12 AHV93919.1 - 0.054 13.3 0.1 5.6 6.8 0.0 2.2 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain Glyc_hyd_38C_2 PF18230.1 AHV93919.1 - 0.059 13.5 0.0 0.63 10.2 0.0 2.1 2 0 0 2 2 2 0 Glycosyl hydrolases family 38 C-terminal sub-domain HTH_Tnp_Tc3_2 PF01498.18 AHV93919.1 - 0.076 13.3 1.5 0.24 11.7 0.1 2.5 2 0 0 2 2 2 0 Transposase Sigma54_DBD PF04552.13 AHV93919.1 - 0.09 12.5 0.1 0.16 11.7 0.1 1.4 1 0 0 1 1 1 0 Sigma-54, DNA binding domain HTH_8 PF02954.19 AHV93919.1 - 0.098 12.5 0.9 8.2 6.3 0.8 2.3 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family TrmB PF01978.19 AHV93919.1 - 0.11 12.3 0.0 0.34 10.8 0.1 1.7 2 0 0 2 2 1 0 Sugar-specific transcriptional regulator TrmB HTH_7 PF02796.15 AHV93919.1 - 0.12 12.5 0.4 0.28 11.3 0.1 1.7 2 0 0 2 2 1 0 Helix-turn-helix domain of resolvase DUF1804 PF08822.11 AHV93919.1 - 0.13 12.2 0.2 10 6.1 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1804) HTH_26 PF13443.6 AHV93919.1 - 0.19 12.2 0.0 2 8.9 0.1 2.1 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain DUF977 PF06163.11 AHV93919.1 - 0.2 11.6 0.6 11 6.0 0.1 2.3 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF977) MerR_1 PF13411.6 AHV93919.1 - 0.23 11.6 0.9 1.4 9.1 0.0 2.3 3 0 0 3 3 2 0 MerR HTH family regulatory protein DNA_processg_A PF02481.15 AHV93920.1 - 6.4e-76 254.3 0.2 8.1e-76 253.9 0.2 1.1 1 0 0 1 1 1 1 DNA recombination-mediator protein A LDcluster4 PF18306.1 AHV93920.1 - 0.13 11.8 2.9 0.26 10.9 2.9 1.7 1 1 0 1 1 1 0 SLOG cluster4 family BPD_transp_2 PF02653.16 AHV93921.1 - 3e-52 177.4 31.5 3e-52 177.4 31.5 2.1 2 0 0 2 2 2 2 Branched-chain amino acid transport system / permease component DUF3382 PF11862.8 AHV93921.1 - 1.2e-22 80.0 7.1 1.2e-22 80.0 7.1 4.6 5 1 0 5 5 5 1 Domain of unknown function (DUF3382) Peripla_BP_2 PF01497.18 AHV93922.1 - 1.5e-16 60.7 0.0 2.1e-16 60.2 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Oxidored_nitro PF00148.19 AHV93922.1 - 0.043 12.6 0.0 0.059 12.1 0.0 1.1 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase Ribonuc_L-PSP PF01042.21 AHV93923.1 - 4.7e-38 129.9 0.1 5.2e-38 129.8 0.1 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP Ribosomal_L32p PF01783.23 AHV93924.1 - 1.7e-17 63.4 0.2 1.8e-17 63.3 0.2 1.0 1 0 0 1 1 1 1 Ribosomal L32p protein family MarR PF01047.22 AHV93926.1 - 2.4e-13 49.8 0.0 4.7e-13 48.8 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 AHV93926.1 - 3.3e-13 49.3 0.0 6.7e-13 48.3 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 AHV93926.1 - 2.4e-07 31.2 0.0 4.7e-07 30.2 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_34 PF13601.6 AHV93926.1 - 0.00018 21.6 0.0 0.00024 21.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HxlR PF01638.17 AHV93926.1 - 0.0013 18.5 0.0 0.002 17.9 0.0 1.3 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_24 PF13412.6 AHV93926.1 - 0.0027 17.2 0.0 0.0048 16.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding RP-C PF03428.13 AHV93926.1 - 0.0052 16.4 0.4 0.58 9.8 0.2 2.3 1 1 1 2 2 2 2 Replication protein C N-terminal domain PadR PF03551.14 AHV93926.1 - 0.0086 16.0 0.0 0.015 15.3 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_20 PF12840.7 AHV93926.1 - 0.026 14.6 0.3 0.085 12.9 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain ABC_tran PF00005.27 AHV93927.1 - 1.6e-26 93.5 0.0 2.1e-26 93.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 AHV93927.1 - 9.9e-05 22.3 0.1 0.52 10.1 0.0 2.2 2 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 AHV93927.1 - 0.0019 17.7 0.3 0.04 13.4 0.3 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 AHV93927.1 - 0.002 17.8 0.0 0.0038 16.9 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain MMR_HSR1 PF01926.23 AHV93927.1 - 0.0094 16.0 0.0 0.015 15.3 0.0 1.3 1 0 0 1 1 1 1 50S ribosome-binding GTPase AIG1 PF04548.16 AHV93927.1 - 0.018 14.4 0.1 0.033 13.5 0.1 1.4 1 0 0 1 1 1 0 AIG1 family MeaB PF03308.16 AHV93927.1 - 0.021 13.8 0.0 0.036 13.0 0.0 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_30 PF13604.6 AHV93927.1 - 0.043 13.5 0.3 0.11 12.2 0.1 1.7 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 AHV93927.1 - 0.052 13.4 0.0 0.083 12.8 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase SRP54 PF00448.22 AHV93927.1 - 0.12 12.0 0.0 0.21 11.2 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain MukB PF04310.12 AHV93927.1 - 0.13 12.0 0.0 0.2 11.5 0.0 1.2 1 0 0 1 1 1 0 MukB N-terminal AAA_16 PF13191.6 AHV93927.1 - 0.15 12.5 0.0 0.19 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain AAA_7 PF12775.7 AHV93927.1 - 0.17 11.4 0.0 0.26 10.8 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_23 PF13476.6 AHV93927.1 - 0.23 11.9 0.0 0.33 11.4 0.0 1.1 1 0 0 1 1 1 0 AAA domain PepSY_TM PF03929.16 AHV93929.1 - 2.6e-58 198.0 10.7 4.5e-58 197.2 10.7 1.3 1 0 0 1 1 1 1 PepSY-associated TM region DUF4405 PF14358.6 AHV93929.1 - 0.0014 19.1 0.2 0.0014 19.1 0.2 3.7 3 1 1 4 4 4 1 Domain of unknown function (DUF4405) Rho_RNA_bind PF07497.12 AHV93931.1 - 1.2e-30 105.1 0.0 2.9e-30 104.0 0.0 1.7 1 0 0 1 1 1 1 Rho termination factor, RNA-binding domain ATP-synt_ab PF00006.25 AHV93931.1 - 9.1e-24 84.3 0.1 1.3e-23 83.8 0.1 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain Rho_N PF07498.12 AHV93931.1 - 3e-16 59.1 3.6 6.8e-16 57.9 3.6 1.7 1 0 0 1 1 1 1 Rho termination factor, N-terminal domain OB_RNB PF08206.11 AHV93931.1 - 0.00081 19.0 0.0 0.0019 17.9 0.0 1.7 1 0 0 1 1 1 1 Ribonuclease B OB domain NACHT PF05729.12 AHV93931.1 - 0.001 19.0 0.0 0.0019 18.2 0.0 1.3 1 0 0 1 1 1 1 NACHT domain AAA_25 PF13481.6 AHV93931.1 - 0.0019 17.8 0.2 0.0048 16.5 0.2 1.6 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 AHV93931.1 - 0.035 14.5 0.0 0.093 13.2 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 AHV93931.1 - 0.081 13.2 0.1 0.23 11.7 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.6 AHV93931.1 - 0.09 13.1 0.1 0.14 12.5 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 AHV93931.1 - 0.1 12.6 0.1 0.37 10.8 0.1 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Mor PF08765.11 AHV93931.1 - 0.13 12.3 0.0 0.33 10.9 0.0 1.7 1 0 0 1 1 1 0 Mor transcription activator family TPR_19 PF14559.6 AHV93932.1 - 1.6e-08 34.9 11.9 2.2e-07 31.3 4.7 2.7 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_12 PF13424.6 AHV93932.1 - 1.2e-07 31.9 7.9 0.00047 20.4 0.4 3.0 2 1 0 2 2 2 2 Tetratricopeptide repeat TPR_17 PF13431.6 AHV93932.1 - 1.7e-07 31.2 5.1 0.00084 19.5 0.1 4.0 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_14 PF13428.6 AHV93932.1 - 2.8e-07 30.8 14.2 0.0016 19.1 1.3 3.9 3 1 2 5 5 3 2 Tetratricopeptide repeat TPR_1 PF00515.28 AHV93932.1 - 1.5e-06 27.8 4.2 7.9e-06 25.5 0.5 3.4 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_2 PF07719.17 AHV93932.1 - 2.6e-06 27.1 6.1 0.00019 21.3 0.5 3.7 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_16 PF13432.6 AHV93932.1 - 5.1e-06 27.0 27.3 6.8e-05 23.4 7.1 3.1 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_8 PF13181.6 AHV93932.1 - 5.8e-06 26.1 0.7 0.017 15.3 0.0 3.6 4 0 0 4 4 3 1 Tetratricopeptide repeat TPR_11 PF13414.6 AHV93932.1 - 1.3e-05 24.7 5.2 3.1e-05 23.6 1.3 3.0 2 1 1 3 3 3 1 TPR repeat TPR_9 PF13371.6 AHV93932.1 - 0.00031 20.8 5.6 0.0007 19.7 3.7 2.2 1 1 1 2 2 2 1 Tetratricopeptide repeat Coatomer_E PF04733.14 AHV93932.1 - 0.002 17.6 0.2 0.0025 17.3 0.2 1.3 1 0 0 1 1 1 1 Coatomer epsilon subunit TPR_4 PF07721.14 AHV93932.1 - 0.0028 18.1 8.1 0.56 11.0 0.1 4.4 4 0 0 4 4 4 1 Tetratricopeptide repeat TRCF PF03461.15 AHV93932.1 - 0.0032 17.8 0.0 0.0063 16.9 0.0 1.5 1 0 0 1 1 1 1 TRCF domain Wzy_C_2 PF11846.8 AHV93932.1 - 0.0037 17.2 1.0 0.0037 17.2 1.0 2.9 2 1 2 4 4 4 1 Virulence factor membrane-bound polymerase, C-terminal NARP1 PF12569.8 AHV93932.1 - 0.004 16.1 0.3 0.0053 15.7 0.3 1.2 1 0 0 1 1 1 1 NMDA receptor-regulated protein 1 DUF4192 PF13830.6 AHV93932.1 - 0.019 15.0 6.8 0.031 14.4 6.8 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4192) TPR_6 PF13174.6 AHV93932.1 - 0.041 14.5 10.6 0.74 10.6 0.4 3.6 4 0 0 4 4 4 0 Tetratricopeptide repeat PPR PF01535.20 AHV93932.1 - 0.097 13.0 0.0 17 5.9 0.0 3.3 3 0 0 3 3 3 0 PPR repeat TPR_10 PF13374.6 AHV93932.1 - 0.2 11.5 16.5 0.95 9.4 2.6 3.8 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_20 PF14561.6 AHV93932.1 - 0.21 11.9 5.5 1.9 8.8 0.1 3.1 2 1 1 3 3 3 0 Tetratricopeptide repeat TPR_7 PF13176.6 AHV93932.1 - 0.97 9.6 4.2 2.6 8.3 0.1 3.4 4 0 0 4 4 4 0 Tetratricopeptide repeat FCD PF07729.12 AHV93933.1 - 2.2e-27 96.0 10.9 3.2e-27 95.4 10.9 1.2 1 0 0 1 1 1 1 FCD domain GntR PF00392.21 AHV93933.1 - 9.3e-19 66.8 0.5 2.2e-18 65.6 0.1 1.8 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family Rrf2 PF02082.20 AHV93933.1 - 0.041 14.2 0.0 0.079 13.3 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator HTH_Crp_2 PF13545.6 AHV93933.1 - 0.091 12.8 0.1 0.25 11.4 0.1 1.8 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain PLA1 PF02253.15 AHV93934.1 - 4.4e-34 118.2 2.7 5.8e-34 117.8 2.7 1.1 1 0 0 1 1 1 1 Phospholipase A1 MG2 PF01835.19 AHV93934.1 - 0.023 15.1 0.0 0.091 13.2 0.0 2.0 1 0 0 1 1 1 0 MG2 domain PqiA PF04403.13 AHV93935.1 - 1.2e-62 210.4 31.6 8.2e-39 132.9 17.6 2.1 2 0 0 2 2 2 2 Paraquat-inducible protein A Zn-ribbon_8 PF09723.10 AHV93935.1 - 0.0019 18.2 4.9 0.39 10.9 0.1 2.4 2 0 0 2 2 2 2 Zinc ribbon domain zf-MYND PF01753.18 AHV93935.1 - 0.29 11.3 7.7 0.62 10.2 1.6 2.3 2 0 0 2 2 2 0 MYND finger DZR PF12773.7 AHV93935.1 - 0.39 10.8 5.7 3.9 7.6 0.4 2.5 2 1 0 2 2 2 0 Double zinc ribbon OrfB_Zn_ribbon PF07282.11 AHV93935.1 - 0.49 10.3 4.5 0.62 10.0 0.2 2.2 2 0 0 2 2 2 0 Putative transposase DNA-binding domain TackOD1 PF18551.1 AHV93935.1 - 0.53 9.9 3.1 11 5.6 0.2 2.1 2 0 0 2 2 2 0 Thaumarchaeal output domain 1 FUSC-like PF12805.7 AHV93935.1 - 1.1 8.2 5.6 2.7 7.0 5.6 1.6 1 0 0 1 1 1 0 FUSC-like inner membrane protein yccS ADK_lid PF05191.14 AHV93935.1 - 1.2 9.1 0.0 1.2 9.1 0.0 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid zf-RING_9 PF13901.6 AHV93935.1 - 1.4 8.9 6.8 1.1 9.2 0.7 2.1 2 0 0 2 2 2 0 Putative zinc-RING and/or ribbon DUF4231 PF14015.6 AHV93935.1 - 2.5 8.6 10.9 5 7.7 0.8 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF4231) DUF983 PF06170.12 AHV93935.1 - 2.7 8.4 0.0 2.7 8.4 0.0 6.1 4 3 2 6 6 6 0 Protein of unknown function (DUF983) Epiglycanin_C PF14654.6 AHV93935.1 - 6.8 6.8 6.9 3.9 7.6 0.6 2.8 2 0 0 2 2 2 0 Mucin, catalytic, TM and cytoplasmic tail region TetR_C_24 PF17932.1 AHV93936.1 - 2e-05 24.8 0.0 2.7e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_4 PF08359.11 AHV93936.1 - 0.0017 18.5 0.0 0.0024 18.0 0.0 1.2 1 0 0 1 1 1 1 YsiA-like protein, C-terminal region TetR_C_17 PF17922.1 AHV93936.1 - 0.013 15.6 0.0 0.017 15.2 0.0 1.3 1 1 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain TetR_C_6 PF13977.6 AHV93936.1 - 0.018 15.3 0.8 0.03 14.6 0.1 1.7 2 0 0 2 2 2 0 BetI-type transcriptional repressor, C-terminal TetR_C_27 PF17935.1 AHV93936.1 - 0.051 13.6 0.0 0.11 12.5 0.0 1.6 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain TetR_C_11 PF16859.5 AHV93936.1 - 0.055 13.8 0.0 0.09 13.1 0.0 1.5 1 1 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain DUF4380 PF14315.6 AHV93936.1 - 0.11 11.4 0.0 0.14 11.1 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4380) ABC_tran PF00005.27 AHV93937.1 - 3.1e-27 95.8 0.0 4e-27 95.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 AHV93937.1 - 4.4e-16 59.5 3.6 3.3e-07 30.4 0.7 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 AHV93937.1 - 2.5e-08 33.6 0.2 0.0013 18.2 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_13 PF13166.6 AHV93937.1 - 1.6e-06 27.1 0.0 0.027 13.2 0.0 2.0 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.6 AHV93937.1 - 9e-06 25.3 0.1 1.7e-05 24.5 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 AHV93937.1 - 3.5e-05 24.3 1.2 5.1e-05 23.7 1.2 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 AHV93937.1 - 5.2e-05 23.8 0.0 7.8e-05 23.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 AHV93937.1 - 0.0011 19.2 0.0 0.0028 17.9 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 AHV93937.1 - 0.003 17.3 0.0 0.004 16.9 0.0 1.1 1 0 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 AHV93937.1 - 0.0036 17.0 0.1 0.005 16.6 0.1 1.5 1 1 0 1 1 1 1 AAA domain NACHT PF05729.12 AHV93937.1 - 0.0054 16.7 0.7 0.0082 16.1 0.5 1.7 1 1 0 1 1 1 1 NACHT domain AAA_25 PF13481.6 AHV93937.1 - 0.0088 15.6 1.0 0.015 14.9 1.0 1.7 1 1 0 1 1 1 1 AAA domain ABC_ATPase PF09818.9 AHV93937.1 - 0.0091 14.8 0.1 0.85 8.3 0.1 2.2 2 1 0 2 2 2 1 Predicted ATPase of the ABC class AAA_27 PF13514.6 AHV93937.1 - 0.019 14.6 0.0 0.03 13.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 AHV93937.1 - 0.022 14.9 0.0 0.042 14.0 0.0 1.7 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 AHV93937.1 - 0.04 14.1 0.2 0.25 11.6 0.2 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit RsgA_GTPase PF03193.16 AHV93937.1 - 0.041 13.8 0.0 0.069 13.1 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_5 PF07728.14 AHV93937.1 - 0.052 13.5 0.6 0.16 11.9 0.3 1.9 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_28 PF13521.6 AHV93937.1 - 0.058 13.6 0.3 0.14 12.4 0.2 1.6 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 AHV93937.1 - 0.086 13.3 0.0 0.19 12.1 0.0 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 AHV93937.1 - 0.1 13.1 0.0 0.2 12.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain CLP1_P PF16575.5 AHV93937.1 - 0.12 12.1 0.0 0.25 11.1 0.0 1.6 1 1 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop DUF2813 PF11398.8 AHV93937.1 - 0.15 11.3 0.1 0.22 10.8 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2813) MMR_HSR1 PF01926.23 AHV93937.1 - 0.21 11.6 0.1 0.43 10.7 0.1 1.4 1 0 0 1 1 1 0 50S ribosome-binding GTPase CbiA PF01656.23 AHV93937.1 - 0.41 10.7 1.1 1.3 9.1 0.1 2.0 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain rve_3 PF13683.6 AHV93938.1 - 8.3e-32 108.8 0.1 4.5e-31 106.4 0.0 2.2 2 0 0 2 2 2 1 Integrase core domain rve PF00665.26 AHV93938.1 - 4.2e-25 88.2 0.0 1.1e-23 83.7 0.0 2.2 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 AHV93938.1 - 1.8e-11 44.0 8.6 3.6e-11 43.0 8.6 1.5 1 0 0 1 1 1 1 HTH-like domain rve_2 PF13333.6 AHV93938.1 - 5.8e-07 29.6 0.0 1.3e-06 28.5 0.0 1.6 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AHV93938.1 - 0.00041 20.6 0.0 0.00091 19.5 0.0 1.6 1 1 1 2 2 2 1 DDE domain Rhomboid_SP PF12595.8 AHV93938.1 - 0.0081 15.6 0.3 2.2 7.6 0.0 2.3 1 1 0 2 2 2 2 Rhomboid serine protease DUF1780 PF08682.10 AHV93938.1 - 0.13 11.9 1.0 1.6 8.3 0.3 2.2 2 0 0 2 2 2 0 Putative endonuclease, protein of unknown function (DUF1780) HATPase_c PF02518.26 AHV93940.1 - 3.1e-13 50.2 0.0 3.3e-13 50.1 0.0 1.0 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 AHV93940.1 - 0.013 15.3 0.0 0.013 15.3 0.0 1.1 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 AHV93940.1 - 0.11 12.5 0.0 0.13 12.3 0.0 1.1 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain BPD_transp_1 PF00528.22 AHV93941.1 - 6.1e-25 88.0 6.8 7.9e-25 87.7 6.8 1.1 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component MTS PF05175.14 AHV93942.1 - 7.7e-19 67.9 0.0 5e-17 62.0 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_31 PF13847.6 AHV93942.1 - 6.8e-13 48.7 0.0 9.6e-13 48.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 AHV93942.1 - 5.4e-10 39.2 0.0 7.8e-10 38.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.6 AHV93942.1 - 1.9e-09 38.1 0.1 4.6e-09 36.9 0.1 1.7 2 0 0 2 2 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 AHV93942.1 - 3e-07 30.3 0.0 5.2e-07 29.5 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 UPF0020 PF01170.18 AHV93942.1 - 5.2e-07 29.5 0.2 4e-06 26.6 0.5 2.1 2 1 0 2 2 2 1 Putative RNA methylase family UPF0020 Methyltransf_18 PF12847.7 AHV93942.1 - 2.1e-06 27.7 0.0 5.1e-06 26.5 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_15 PF09445.10 AHV93942.1 - 3.8e-06 26.6 0.0 5.6e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_12 PF08242.12 AHV93942.1 - 3.9e-05 24.3 0.1 0.00012 22.8 0.0 1.8 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_10 PF05971.12 AHV93942.1 - 0.0001 21.7 0.0 0.00015 21.3 0.0 1.1 1 0 0 1 1 1 1 RNA methyltransferase Methyltransf_11 PF08241.12 AHV93942.1 - 0.00028 21.5 0.2 0.0016 19.0 0.2 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 AHV93942.1 - 0.00028 20.7 0.0 0.0013 18.6 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.6 AHV93942.1 - 0.0032 18.5 0.2 0.016 16.3 0.2 2.1 1 1 0 1 1 1 1 Methyltransferase domain PrmC_N PF17827.1 AHV93942.1 - 0.0059 17.2 0.4 0.019 15.5 0.0 2.0 2 0 0 2 2 2 1 PrmC N-terminal domain Ubie_methyltran PF01209.18 AHV93942.1 - 0.006 15.9 0.0 0.0099 15.2 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family PCMT PF01135.19 AHV93942.1 - 0.0095 15.7 0.0 0.014 15.2 0.0 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) TrmK PF04816.12 AHV93942.1 - 0.049 13.2 0.0 0.076 12.5 0.0 1.3 1 0 0 1 1 1 0 tRNA (adenine(22)-N(1))-methyltransferase AviRa PF11599.8 AHV93942.1 - 0.054 13.0 0.1 0.091 12.2 0.1 1.4 1 1 0 1 1 1 0 RRNA methyltransferase AviRa Met_10 PF02475.16 AHV93942.1 - 0.097 12.4 0.0 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 Met-10+ like-protein Methyltr_RsmB-F PF01189.17 AHV93942.1 - 0.14 11.7 0.0 0.21 11.2 0.0 1.2 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F Eco57I PF07669.11 AHV93942.1 - 0.22 12.0 0.0 0.39 11.3 0.0 1.3 1 0 0 1 1 1 0 Eco57I restriction-modification methylase FAD_binding_4 PF01565.23 AHV93943.1 - 1.3e-25 89.8 0.1 1.6e-25 89.4 0.1 1.1 1 0 0 1 1 1 1 FAD binding domain ANF_receptor PF01094.28 AHV93943.1 - 0.015 14.4 0.0 0.017 14.3 0.0 1.1 1 0 0 1 1 1 0 Receptor family ligand binding region T2SSF PF00482.23 AHV93944.1 - 1.9e-08 34.3 5.1 1.9e-08 34.3 5.1 2.1 3 0 0 3 3 3 1 Type II secretion system (T2SS), protein F DUF4381 PF14316.6 AHV93944.1 - 0.67 10.2 12.2 2.8 8.2 1.2 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4381) DUF948 PF06103.11 AHV93944.1 - 0.69 10.2 3.8 8.3 6.7 0.0 3.1 3 0 0 3 3 3 0 Bacterial protein of unknown function (DUF948) DUF2207 PF09972.9 AHV93944.1 - 1.4 7.6 6.6 0.88 8.3 0.2 2.3 2 1 1 3 3 3 0 Predicted membrane protein (DUF2207) ThrE PF06738.12 AHV93944.1 - 1.5 8.1 9.4 0.071 12.5 1.1 2.4 3 0 0 3 3 3 0 Putative threonine/serine exporter VirB3 PF05101.13 AHV93944.1 - 6.7 7.0 10.8 2.3 8.5 1.1 2.9 3 0 0 3 3 3 0 Type IV secretory pathway, VirB3-like protein UPF0126 PF03458.13 AHV93946.1 - 7.2e-33 112.3 16.2 7.6e-22 77.0 2.7 2.7 2 1 1 3 3 3 2 UPF0126 domain DUF4131 PF13567.6 AHV93946.1 - 8.5 6.0 6.7 1.5 8.5 2.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) DDE_Tnp_ISL3 PF01610.17 AHV93947.1 - 7.9e-65 218.9 1.2 1.1e-64 218.4 0.3 1.6 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV93947.1 - 1.4e-11 43.6 0.1 3.6e-11 42.3 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV93947.1 - 5.3e-09 36.6 11.2 1.1e-08 35.6 11.2 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV93947.1 - 0.0056 16.7 0.2 0.016 15.3 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain SLT_L PF14718.6 AHV93947.1 - 0.016 15.3 1.5 0.016 15.3 1.5 1.8 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain NOB1_Zn_bind PF08772.11 AHV93947.1 - 0.017 15.2 0.2 1.2 9.3 0.0 2.5 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-IS66 PF13005.7 AHV93947.1 - 8.2 6.9 9.6 3.6 8.1 6.6 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Inositol_P PF00459.25 AHV93948.1 - 3.4e-55 187.5 0.0 7.1e-55 186.4 0.0 1.4 1 1 0 1 1 1 1 Inositol monophosphatase family adh_short PF00106.25 AHV93949.1 - 7.2e-17 61.5 0.3 7.8e-17 61.4 0.3 1.0 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 AHV93949.1 - 8.6e-13 48.4 0.2 9.8e-13 48.2 0.2 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 AHV93949.1 - 5.3e-09 36.2 0.5 6.4e-09 36.0 0.5 1.0 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 AHV93949.1 - 2.9e-06 26.9 0.1 3.2e-06 26.8 0.1 1.0 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family TrkA_N PF02254.18 AHV93949.1 - 0.0015 18.8 0.2 0.0019 18.4 0.2 1.3 1 0 0 1 1 1 1 TrkA-N domain NmrA PF05368.13 AHV93949.1 - 0.0027 17.3 0.3 0.0032 17.1 0.3 1.1 1 0 0 1 1 1 1 NmrA-like family 3HCDH_N PF02737.18 AHV93949.1 - 0.0032 17.4 0.4 0.0038 17.1 0.4 1.1 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 AHV93949.1 - 0.0068 16.8 0.1 0.0086 16.5 0.1 1.2 1 0 0 1 1 1 1 Putative NAD(P)-binding NAD_binding_10 PF13460.6 AHV93949.1 - 0.013 15.4 0.3 0.014 15.3 0.3 1.1 1 0 0 1 1 1 0 NAD(P)H-binding RmlD_sub_bind PF04321.17 AHV93949.1 - 0.014 14.5 0.1 0.018 14.2 0.1 1.1 1 0 0 1 1 1 0 RmlD substrate binding domain NAD_binding_2 PF03446.15 AHV93949.1 - 0.022 14.9 0.3 0.028 14.6 0.3 1.2 1 1 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Shikimate_DH PF01488.20 AHV93949.1 - 0.024 14.7 2.1 0.088 12.9 2.1 1.8 1 1 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase GDP_Man_Dehyd PF16363.5 AHV93949.1 - 0.029 13.8 0.0 0.033 13.6 0.0 1.0 1 0 0 1 1 1 0 GDP-mannose 4,6 dehydratase THF_DHG_CYH_C PF02882.19 AHV93949.1 - 0.031 13.6 0.2 0.042 13.2 0.2 1.3 1 1 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Polysacc_synt_2 PF02719.15 AHV93949.1 - 0.07 12.2 0.1 0.081 12.0 0.1 1.0 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein DDE_Tnp_ISL3 PF01610.17 AHV93950.1 - 4.1e-25 88.9 0.1 4.5e-25 88.8 0.1 1.0 1 0 0 1 1 1 1 Transposase SLT_L PF14718.6 AHV93950.1 - 0.00075 19.6 1.0 0.0012 18.9 1.0 1.3 1 0 0 1 1 1 1 Soluble lytic murein transglycosylase L domain Redoxin PF08534.10 AHV93951.1 - 7e-34 116.7 0.2 8.2e-33 113.2 0.0 2.0 2 0 0 2 2 2 1 Redoxin Glutaredoxin PF00462.24 AHV93951.1 - 4.7e-15 55.5 0.2 1.2e-14 54.2 0.0 1.8 2 0 0 2 2 2 1 Glutaredoxin AhpC-TSA PF00578.21 AHV93951.1 - 6.4e-13 48.7 0.0 2.2e-12 47.0 0.0 1.7 2 0 0 2 2 2 1 AhpC/TSA family DUF836 PF05768.14 AHV93951.1 - 0.0038 17.6 0.0 0.0085 16.5 0.0 1.6 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Thioredoxin_2 PF13098.6 AHV93951.1 - 0.14 12.6 0.0 0.4 11.1 0.0 1.8 2 0 0 2 2 2 0 Thioredoxin-like domain Amidase PF01425.21 AHV93952.1 - 6.8e-89 298.9 0.0 1.2e-88 298.1 0.0 1.2 1 0 0 1 1 1 1 Amidase GST_C_2 PF13410.6 AHV93953.1 - 3.4e-10 39.8 0.7 7e-10 38.8 0.7 1.6 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C PF00043.25 AHV93953.1 - 1.4e-09 38.1 0.0 2.2e-09 37.4 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_N PF02798.20 AHV93953.1 - 2.9e-08 33.9 0.0 5.8e-08 33.0 0.0 1.6 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_C_3 PF14497.6 AHV93953.1 - 4.1e-06 26.9 0.0 6.5e-06 26.3 0.0 1.3 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_N_2 PF13409.6 AHV93953.1 - 1.3e-05 25.4 0.0 3.1e-05 24.2 0.0 1.7 1 1 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_3 PF13417.6 AHV93953.1 - 0.00085 19.7 0.0 0.0029 18.0 0.0 1.9 1 1 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Acyl-CoA_dh_N PF02771.16 AHV93954.1 - 7.7e-26 91.0 0.3 8.5e-26 90.8 0.3 1.0 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain LysR_substrate PF03466.20 AHV93955.1 - 1.2e-22 80.3 3.3 1.4e-22 80.1 3.3 1.0 1 0 0 1 1 1 1 LysR substrate binding domain Gly_kinase PF02595.15 AHV93956.1 - 6.5e-139 463.0 15.8 7.5e-139 462.8 15.8 1.0 1 0 0 1 1 1 1 Glycerate kinase family PrmA PF06325.13 AHV93958.1 - 1e-84 284.5 0.0 1.1e-84 284.3 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_23 PF13489.6 AHV93958.1 - 2.2e-10 40.6 0.0 4e-10 39.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 AHV93958.1 - 7.1e-10 38.7 0.0 1.1e-09 38.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.6 AHV93958.1 - 3.9e-08 33.9 0.0 8.6e-08 32.8 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 AHV93958.1 - 1.8e-06 27.8 0.0 3.1e-06 27.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 AHV93958.1 - 1e-05 26.1 0.0 2.2e-05 25.0 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 AHV93958.1 - 0.0016 19.1 0.0 0.0029 18.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 AHV93958.1 - 0.0033 17.2 0.0 0.0052 16.6 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Cons_hypoth95 PF03602.15 AHV93958.1 - 0.0073 16.0 0.0 0.011 15.3 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Met_10 PF02475.16 AHV93958.1 - 0.0086 15.8 0.0 0.013 15.3 0.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein Methyltrans_SAM PF10672.9 AHV93958.1 - 0.05 12.7 0.0 0.078 12.1 0.0 1.2 1 0 0 1 1 1 0 S-adenosylmethionine-dependent methyltransferase Methyltransf_32 PF13679.6 AHV93958.1 - 0.1 12.5 0.0 0.16 11.9 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_9 PF08003.11 AHV93958.1 - 0.17 10.7 0.0 0.25 10.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) Chor_lyase PF04345.13 AHV93959.1 - 4.2e-21 75.3 0.1 5.5e-21 74.9 0.1 1.2 1 0 0 1 1 1 1 Chorismate lyase BPD_transp_2 PF02653.16 AHV93960.1 - 4.2e-48 163.9 49.5 4.8e-48 163.6 49.5 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component dUTPase PF00692.19 AHV93961.1 - 5.9e-08 32.5 0.0 4.9e-07 29.5 0.0 1.9 2 0 0 2 2 2 1 dUTPase Flagellar_put PF12611.8 AHV93961.1 - 0.14 12.0 1.5 0.22 11.3 1.5 1.3 1 0 0 1 1 1 0 Putative flagellar DDE_Tnp_ISL3 PF01610.17 AHV93962.1 - 2.8e-65 220.4 1.7 3e-65 220.3 0.4 1.6 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV93962.1 - 1.4e-11 43.6 0.1 3.6e-11 42.3 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV93962.1 - 5.3e-09 36.6 11.2 1.1e-08 35.6 11.2 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 SLT_L PF14718.6 AHV93962.1 - 0.016 15.3 1.5 0.016 15.3 1.5 1.9 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain NOB1_Zn_bind PF08772.11 AHV93962.1 - 0.017 15.3 0.2 1.2 9.3 0.0 2.5 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-IS66 PF13005.7 AHV93962.1 - 8.2 6.9 9.6 3.6 8.1 6.6 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Oxidored_molyb PF00174.19 AHV93963.1 - 3.9e-28 98.2 0.0 5.6e-28 97.7 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain SBP_bac_5 PF00496.22 AHV93964.1 - 2.7e-83 280.0 2.9 3.5e-83 279.6 2.9 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Sua5_yciO_yrdC PF01300.18 AHV93965.1 - 2.6e-47 160.6 0.0 3.2e-47 160.3 0.0 1.1 1 0 0 1 1 1 1 Telomere recombination SUA5 PF03481.13 AHV93965.1 - 2.2e-19 70.4 0.0 3.8e-19 69.6 0.0 1.4 1 0 0 1 1 1 1 Putative GTP-binding controlling metal-binding Ribosomal_S3_C PF00189.20 AHV93966.1 - 3.9e-40 136.2 1.5 8.5e-40 135.2 1.5 1.6 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.17 AHV93966.1 - 1.8e-20 72.5 1.6 4e-20 71.4 1.6 1.6 1 0 0 1 1 1 1 KH domain KH_4 PF13083.6 AHV93966.1 - 0.023 14.6 0.1 0.045 13.6 0.1 1.5 1 0 0 1 1 1 0 KH domain YscO PF07321.12 AHV93967.1 - 0.027 14.4 0.7 0.03 14.3 0.7 1.0 1 0 0 1 1 1 0 Type III secretion protein YscO BPD_transp_2 PF02653.16 AHV93968.1 - 1.6e-21 76.7 15.3 1.8e-21 76.6 15.3 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component HisKA_4TM PF16926.5 AHV93968.1 - 0.017 14.7 0.2 0.017 14.7 0.2 1.9 2 0 0 2 2 2 0 Archaeal 4TM region of histidine kinase Pam17 PF08566.10 AHV93968.1 - 0.62 9.9 1.5 1 9.2 0.9 1.6 1 1 1 2 2 2 0 Mitochondrial import protein Pam17 TPP_enzyme_N PF02776.18 AHV93969.1 - 7.8e-54 181.9 0.2 1.5e-52 177.7 0.2 2.5 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 AHV93969.1 - 1.4e-44 151.6 0.1 4.2e-44 150.0 0.0 1.9 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.22 AHV93969.1 - 5.5e-27 94.2 0.0 2.2e-26 92.2 0.0 2.0 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain ATP-grasp PF02222.22 AHV93970.1 - 1.7e-45 154.7 0.0 2.6e-45 154.0 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain PurK_C PF17769.1 AHV93970.1 - 1.1e-19 69.8 0.0 1.9e-19 69.1 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosylaminoimidazole carboxylase C-terminal domain CPSase_L_D2 PF02786.17 AHV93970.1 - 0.0031 17.0 0.0 0.0059 16.1 0.0 1.5 1 1 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Dala_Dala_lig_C PF07478.13 AHV93970.1 - 0.0073 15.9 0.0 0.025 14.1 0.0 1.7 2 0 0 2 2 2 1 D-ala D-ala ligase C-terminus XdhC_C PF13478.6 AHV93970.1 - 0.025 15.1 0.1 0.056 14.0 0.1 1.7 1 0 0 1 1 1 0 XdhC Rossmann domain TMP-TENI PF02581.17 AHV93971.1 - 1.3e-52 177.8 0.4 1.5e-52 177.6 0.4 1.0 1 0 0 1 1 1 1 Thiamine monophosphate synthase ThiG PF05690.14 AHV93971.1 - 0.4 9.9 3.9 0.7 9.2 3.3 1.7 1 1 1 2 2 2 0 Thiazole biosynthesis protein ThiG ABC_tran PF00005.27 AHV93972.1 - 1.9e-52 177.4 0.0 2.1e-26 93.1 0.0 2.6 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 AHV93972.1 - 2e-21 77.1 6.8 0.00015 21.7 0.0 4.3 3 1 0 4 4 4 4 AAA domain, putative AbiEii toxin, Type IV TA system ABC_tran_CTD PF16326.5 AHV93972.1 - 3.1e-17 62.6 7.9 9.1e-17 61.1 7.9 1.9 1 0 0 1 1 1 1 ABC transporter C-terminal domain ABC_tran_Xtn PF12848.7 AHV93972.1 - 2.6e-12 46.6 0.1 3.1e-10 39.9 0.5 2.5 2 0 0 2 2 2 1 ABC transporter SMC_N PF02463.19 AHV93972.1 - 2.5e-11 43.5 0.1 0.012 15.0 0.0 4.2 3 1 0 4 4 4 3 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 AHV93972.1 - 3.1e-07 30.9 9.0 1.7e-05 25.3 0.0 3.1 3 1 0 3 3 2 2 AAA ATPase domain AAA_22 PF13401.6 AHV93972.1 - 3.3e-07 30.7 0.2 0.013 15.8 0.1 3.2 2 2 0 2 2 2 2 AAA domain AAA_23 PF13476.6 AHV93972.1 - 8.8e-07 29.6 0.2 0.01 16.3 0.1 3.2 3 0 0 3 3 3 2 AAA domain RsgA_GTPase PF03193.16 AHV93972.1 - 1.6e-06 28.1 0.1 0.023 14.6 0.0 2.3 2 0 0 2 2 2 2 RsgA GTPase MMR_HSR1 PF01926.23 AHV93972.1 - 5.3e-06 26.5 0.0 0.16 12.0 0.0 2.6 2 0 0 2 2 2 2 50S ribosome-binding GTPase AAA_29 PF13555.6 AHV93972.1 - 6.2e-06 25.9 0.2 0.17 11.7 0.1 2.6 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_15 PF13175.6 AHV93972.1 - 3.9e-05 23.5 0.3 0.24 11.1 0.0 2.6 3 0 0 3 3 2 2 AAA ATPase domain NACHT PF05729.12 AHV93972.1 - 6.8e-05 22.8 0.7 0.028 14.4 0.0 2.8 2 2 0 2 2 2 1 NACHT domain ATP-synt_ab PF00006.25 AHV93972.1 - 0.00042 20.1 0.0 0.055 13.1 0.0 2.3 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_30 PF13604.6 AHV93972.1 - 0.0013 18.5 0.1 0.39 10.4 0.0 3.4 3 1 0 3 3 3 1 AAA domain AAA_24 PF13479.6 AHV93972.1 - 0.0016 18.2 0.0 0.27 11.0 0.0 2.4 2 0 0 2 2 2 1 AAA domain Dynamin_N PF00350.23 AHV93972.1 - 0.0022 18.0 0.0 0.93 9.5 0.0 2.4 2 0 0 2 2 2 1 Dynamin family AAA_18 PF13238.6 AHV93972.1 - 0.0029 18.1 1.3 0.94 10.0 0.0 2.8 3 0 0 3 3 2 1 AAA domain AAA_28 PF13521.6 AHV93972.1 - 0.0049 17.1 0.5 1.2 9.3 0.0 3.3 3 0 0 3 3 3 1 AAA domain Roc PF08477.13 AHV93972.1 - 0.0063 16.7 0.0 3.3 8.0 0.0 2.5 2 0 0 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase AAA_33 PF13671.6 AHV93972.1 - 0.0077 16.4 0.0 0.41 10.8 0.0 3.0 3 0 0 3 3 3 1 AAA domain cobW PF02492.19 AHV93972.1 - 0.011 15.3 0.0 0.24 11.0 0.0 2.3 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_13 PF13166.6 AHV93972.1 - 0.013 14.2 0.3 4.5 5.8 0.0 2.5 3 0 0 3 3 3 0 AAA domain TsaE PF02367.17 AHV93972.1 - 0.035 14.1 0.0 0.78 9.8 0.0 2.4 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE MeaB PF03308.16 AHV93972.1 - 0.039 12.9 0.2 4.6 6.2 0.2 2.3 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Zeta_toxin PF06414.12 AHV93972.1 - 0.042 13.1 0.0 4 6.7 0.0 2.4 2 0 0 2 2 2 0 Zeta toxin AAA PF00004.29 AHV93972.1 - 0.045 14.2 0.0 0.56 10.6 0.0 2.5 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) PduV-EutP PF10662.9 AHV93972.1 - 0.061 13.1 0.1 8.9 6.1 0.0 2.3 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation RNA_helicase PF00910.22 AHV93972.1 - 0.062 13.7 0.0 1.3 9.4 0.0 2.3 2 0 0 2 2 2 0 RNA helicase AAA_25 PF13481.6 AHV93972.1 - 0.065 12.8 0.1 13 5.3 0.0 3.4 3 1 0 3 3 3 0 AAA domain DUF815 PF05673.13 AHV93972.1 - 0.072 12.2 0.0 0.79 8.8 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF815) DUF87 PF01935.17 AHV93972.1 - 0.11 12.6 0.8 3.4 7.7 0.1 2.8 3 0 0 3 3 2 0 Helicase HerA, central domain NTPase_1 PF03266.15 AHV93972.1 - 0.14 12.1 0.2 0.84 9.5 0.1 2.4 2 0 0 2 2 2 0 NTPase MobB PF03205.14 AHV93972.1 - 0.17 11.8 0.5 0.93 9.4 0.1 2.2 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B DUF3584 PF12128.8 AHV93972.1 - 5.4 4.4 10.6 0.52 7.7 0.2 2.7 3 0 0 3 3 2 0 Protein of unknown function (DUF3584) Metallophos PF00149.28 AHV93973.1 - 3.7e-08 34.1 0.0 8.3e-08 33.0 0.0 1.7 1 1 1 2 2 2 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 AHV93973.1 - 0.011 15.9 0.1 0.03 14.5 0.1 1.8 1 1 0 1 1 1 0 Calcineurin-like phosphoesterase superfamily domain FBPase_2 PF06874.11 AHV93973.1 - 0.015 13.7 0.0 0.02 13.2 0.0 1.1 1 0 0 1 1 1 0 Firmicute fructose-1,6-bisphosphatase OEP PF02321.18 AHV93974.1 - 5.4e-51 173.1 29.7 6.3e-27 94.6 6.5 2.0 2 0 0 2 2 2 2 Outer membrane efflux protein Herpes_UL35 PF04496.12 AHV93974.1 - 0.28 11.5 2.2 4.1 7.7 0.1 3.1 3 0 0 3 3 3 0 Herpesvirus UL35 family TctC PF03401.14 AHV93975.1 - 1.3e-69 234.4 0.0 1.5e-69 234.1 0.0 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor GPHR_N PF12537.8 AHV93975.1 - 0.004 17.2 0.2 0.0094 16.0 0.2 1.6 1 0 0 1 1 1 1 The Golgi pH Regulator (GPHR) Family N-terminal DUF4442 PF14539.6 AHV93976.1 - 4.2e-14 52.8 0.0 5.2e-14 52.5 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) DUF4539 PF15072.6 AHV93976.1 - 0.062 13.3 0.0 0.089 12.8 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4539) ABC_tran PF00005.27 AHV93977.1 - 1.7e-30 106.3 0.0 2.1e-30 106.0 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 AHV93977.1 - 1.3e-10 41.5 0.0 6.4e-06 26.2 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 AHV93977.1 - 6.2e-08 32.4 0.4 1.1e-05 24.9 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 AHV93977.1 - 0.0038 17.5 0.2 0.02 15.2 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 AHV93977.1 - 0.0045 16.7 0.1 0.0082 15.9 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.6 AHV93977.1 - 0.005 17.1 0.2 0.13 12.5 0.2 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_16 PF13191.6 AHV93977.1 - 0.0096 16.3 0.1 0.014 15.8 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain ABC_ATPase PF09818.9 AHV93977.1 - 0.034 12.9 0.8 0.88 8.3 0.3 2.7 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA_33 PF13671.6 AHV93977.1 - 0.037 14.2 0.1 0.15 12.2 0.1 2.0 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 AHV93977.1 - 0.13 12.8 0.1 0.18 12.3 0.1 1.2 1 0 0 1 1 1 0 AAA domain TniB PF05621.11 AHV93977.1 - 0.13 11.7 0.1 4.4 6.7 0.0 2.4 3 0 0 3 3 3 0 Bacterial TniB protein RsgA_GTPase PF03193.16 AHV93977.1 - 0.17 11.8 0.0 0.3 11.0 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_13 PF13166.6 AHV93977.1 - 0.17 10.5 0.0 0.66 8.5 0.0 1.7 2 0 0 2 2 2 0 AAA domain Endonuclease_NS PF01223.23 AHV93979.1 - 1.3e-40 139.6 0.1 1.8e-40 139.2 0.1 1.1 1 0 0 1 1 1 1 DNA/RNA non-specific endonuclease Endonuclea_NS_2 PF13930.6 AHV93979.1 - 4.1e-05 23.7 0.0 6.8e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 DNA/RNA non-specific endonuclease AsnC_trans_reg PF01037.21 AHV93980.1 - 3.8e-22 78.0 0.0 4.5e-22 77.8 0.0 1.1 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain DNA_binding_1 PF01035.20 AHV93981.1 - 4.8e-32 109.9 0.1 6.5e-32 109.5 0.1 1.2 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain Methyltransf_1N PF02870.15 AHV93981.1 - 0.095 13.5 0.0 0.17 12.7 0.0 1.4 1 0 0 1 1 1 0 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain FUR PF01475.19 AHV93982.1 - 3e-37 127.4 0.0 4.6e-37 126.8 0.0 1.3 1 0 0 1 1 1 1 Ferric uptake regulator family HTH_IclR PF09339.10 AHV93982.1 - 0.00019 21.2 0.1 0.0027 17.5 0.1 2.6 2 1 0 2 2 2 1 IclR helix-turn-helix domain HTH_20 PF12840.7 AHV93982.1 - 0.014 15.4 0.4 0.031 14.3 0.1 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain TrmB PF01978.19 AHV93982.1 - 0.021 14.7 0.0 0.094 12.6 0.0 2.0 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB PadR PF03551.14 AHV93982.1 - 0.05 13.6 0.0 0.17 11.9 0.0 1.8 1 1 1 2 2 2 0 Transcriptional regulator PadR-like family HTH_7 PF02796.15 AHV93982.1 - 0.096 12.8 0.0 0.42 10.7 0.0 2.2 2 1 0 2 2 2 0 Helix-turn-helix domain of resolvase zinc_ribbon_4 PF13717.6 AHV93982.1 - 0.67 9.9 3.1 8.9 6.3 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Rick_17kDa_Anti PF05433.15 AHV93983.1 - 6.7e-09 35.5 27.3 1.5e-08 34.3 27.3 1.7 1 0 0 1 1 1 1 Glycine zipper 2TM domain Gly-zipper_Omp PF13488.6 AHV93983.1 - 0.0077 16.2 24.6 0.012 15.6 23.4 2.0 1 1 1 2 2 2 2 Glycine zipper DUF533 PF04391.12 AHV93983.1 - 0.022 14.4 2.0 0.042 13.4 2.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF533) TraT PF05818.12 AHV93983.1 - 1.8 8.2 9.9 0.82 9.3 7.9 1.5 1 1 0 1 1 1 0 Enterobacterial TraT complement resistance protein Gly-zipper_YMGG PF13441.6 AHV93983.1 - 2.6 7.8 27.9 5.6 6.8 27.2 2.0 1 1 0 1 1 1 0 YMGG-like Gly-zipper DUF3482 PF11981.8 AHV93983.1 - 2.8 7.2 8.2 3.9 6.8 8.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3482) DUF1269 PF06897.12 AHV93983.1 - 7.7 6.9 10.8 20 5.5 10.8 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1269) Eno-Rase_NADH_b PF12242.8 AHV93984.1 - 0.096 12.5 0.1 0.27 11.0 0.1 1.8 1 1 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase SPOR PF05036.13 AHV93986.1 - 1e-05 25.8 0.0 1.1e-05 25.6 0.0 1.0 1 0 0 1 1 1 1 Sporulation related domain HTH_Crp_2 PF13545.6 AHV93987.1 - 3.2e-20 71.9 1.3 3.2e-20 71.9 1.3 2.2 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain Crp PF00325.20 AHV93987.1 - 1.5e-16 59.7 0.5 3e-16 58.7 0.5 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, crp family cNMP_binding PF00027.29 AHV93987.1 - 7.3e-12 45.2 0.0 1.4e-11 44.3 0.0 1.5 1 0 0 1 1 1 1 Cyclic nucleotide-binding domain HTH_23 PF13384.6 AHV93987.1 - 0.00057 19.6 0.0 0.0013 18.5 0.0 1.6 1 1 0 1 1 1 1 Homeodomain-like domain Sigma70_r4 PF04545.16 AHV93987.1 - 0.011 15.2 0.3 0.033 13.7 0.0 2.0 2 0 0 2 2 2 0 Sigma-70, region 4 FeoB_N PF02421.18 AHV93987.1 - 0.019 14.5 0.0 0.058 12.9 0.0 1.7 1 0 0 1 1 1 0 Ferrous iron transport protein B MarR_2 PF12802.7 AHV93987.1 - 0.056 13.3 0.1 0.11 12.4 0.1 1.5 1 0 0 1 1 1 0 MarR family MFS_1 PF07690.16 AHV93988.1 - 9.1e-20 70.9 25.4 9.1e-20 70.9 25.4 1.6 2 0 0 2 2 2 1 Major Facilitator Superfamily HTH_24 PF13412.6 AHV93989.1 - 2.4e-16 59.0 0.4 4.2e-16 58.2 0.4 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 AHV93989.1 - 5e-15 55.1 4.2 1.4e-14 53.7 4.2 1.8 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.21 AHV93989.1 - 7.8e-15 54.6 0.7 1e-14 54.2 0.1 1.5 2 0 0 2 2 2 1 Lrp/AsnC ligand binding domain HTH_Crp_2 PF13545.6 AHV93989.1 - 0.00015 21.7 0.9 0.00027 20.8 0.9 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR PF01047.22 AHV93989.1 - 0.00019 21.3 0.1 0.0004 20.2 0.1 1.5 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 AHV93989.1 - 0.00029 20.6 1.9 0.00056 19.7 1.9 1.5 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 AHV93989.1 - 0.00037 20.5 0.8 0.0009 19.3 0.8 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 AHV93989.1 - 0.014 15.2 0.5 0.037 13.8 0.5 1.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_11 PF08279.12 AHV93989.1 - 0.083 12.9 0.2 0.13 12.2 0.2 1.3 1 0 0 1 1 1 0 HTH domain BPD_transp_1 PF00528.22 AHV93990.1 - 6.2e-13 48.9 15.1 1e-12 48.2 15.1 1.3 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component Rossmann-like PF10727.9 AHV93990.1 - 0.037 13.9 0.5 0.15 11.9 0.1 2.1 2 0 0 2 2 2 0 Rossmann-like domain ThiF PF00899.21 AHV93990.1 - 0.066 12.6 1.5 0.5 9.7 0.0 2.1 2 0 0 2 2 2 0 ThiF family Queuosine_synth PF02547.15 AHV93991.1 - 1.3e-48 165.8 0.0 1.4e-48 165.7 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein HATPase_c PF02518.26 AHV93992.1 - 4.7e-14 52.8 0.0 1e-13 51.8 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HAMP PF00672.25 AHV93992.1 - 4.8e-11 42.9 3.4 6.1e-11 42.5 0.0 2.9 3 0 0 3 3 3 1 HAMP domain HATPase_c_3 PF13589.6 AHV93992.1 - 0.019 14.8 0.0 0.033 14.0 0.0 1.2 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RNA_pol_L_2 PF13656.6 AHV93992.1 - 0.027 14.2 0.0 0.061 13.1 0.0 1.6 1 0 0 1 1 1 0 RNA polymerase Rpb3/Rpb11 dimerisation domain HATPase_c_2 PF13581.6 AHV93992.1 - 0.029 14.3 0.2 0.082 12.9 0.1 1.8 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain HisKA PF00512.25 AHV93992.1 - 0.044 13.8 0.5 0.14 12.2 0.0 2.2 3 0 0 3 3 3 0 His Kinase A (phospho-acceptor) domain Asn_synthase PF00733.21 AHV93993.1 - 2.2e-111 372.9 0.0 2.9e-111 372.6 0.0 1.1 1 0 0 1 1 1 1 Asparagine synthase GATase_7 PF13537.6 AHV93993.1 - 3.2e-41 140.1 0.0 4.9e-41 139.5 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 AHV93993.1 - 7.8e-38 129.7 0.1 1.3e-37 129.0 0.1 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain QueC PF06508.13 AHV93993.1 - 0.00074 19.1 0.0 0.0012 18.4 0.0 1.2 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC NAD_synthase PF02540.17 AHV93993.1 - 0.0024 17.0 0.1 0.0042 16.2 0.1 1.4 1 0 0 1 1 1 1 NAD synthase DUF3700 PF12481.8 AHV93993.1 - 0.017 14.6 0.0 0.035 13.6 0.0 1.4 1 0 0 1 1 1 0 Aluminium induced protein Transket_pyr PF02779.24 AHV93994.1 - 5.6e-65 218.3 0.1 1.3e-64 217.2 0.0 1.6 2 0 0 2 2 2 1 Transketolase, pyrimidine binding domain OxoGdeHyase_C PF16870.5 AHV93994.1 - 3.3e-51 173.0 0.1 5.7e-51 172.2 0.1 1.4 1 0 0 1 1 1 1 2-oxoglutarate dehydrogenase C-terminal E1_dh PF00676.20 AHV93994.1 - 1e-48 165.9 0.0 1.5e-48 165.3 0.0 1.2 1 0 0 1 1 1 1 Dehydrogenase E1 component 4HBT_2 PF13279.6 AHV93995.1 - 2.5e-07 31.2 0.0 3.1e-07 30.9 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily 4HBT PF03061.22 AHV93995.1 - 5.6e-07 29.8 0.0 1.5e-06 28.4 0.0 1.8 1 1 0 1 1 1 1 Thioesterase superfamily AAA_lid_9 PF17871.1 AHV93996.1 - 9.7e-36 121.9 2.8 9.7e-36 121.9 2.8 2.6 1 1 0 2 2 2 1 AAA lid domain Clp_N PF02861.20 AHV93996.1 - 2e-24 85.5 5.4 1e-11 44.8 1.0 3.0 2 0 0 2 2 2 2 Clp amino terminal domain, pathogenicity island component AAA PF00004.29 AHV93996.1 - 1.4e-18 67.6 0.0 3.6e-12 46.8 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_2 PF07724.14 AHV93996.1 - 7.4e-17 62.0 1.9 1.5e-15 57.7 0.0 3.4 4 1 0 4 4 3 1 AAA domain (Cdc48 subfamily) AAA_16 PF13191.6 AHV93996.1 - 7.9e-12 45.9 10.2 3.7e-06 27.4 0.2 4.8 4 2 0 4 4 4 2 AAA ATPase domain AAA_5 PF07728.14 AHV93996.1 - 9.5e-09 35.4 1.0 0.014 15.4 0.0 4.1 4 0 0 4 4 4 2 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 AHV93996.1 - 3e-08 34.0 0.2 0.0012 19.1 0.0 3.4 3 1 0 3 3 2 2 AAA domain IstB_IS21 PF01695.17 AHV93996.1 - 1.9e-06 27.7 0.0 0.074 12.8 0.0 2.5 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_7 PF12775.7 AHV93996.1 - 2.2e-05 24.0 0.0 0.21 11.1 0.0 2.5 2 0 0 2 2 2 2 P-loop containing dynein motor region TniB PF05621.11 AHV93996.1 - 4.7e-05 22.9 0.0 0.029 13.8 0.1 3.4 2 1 0 2 2 2 1 Bacterial TniB protein Roc PF08477.13 AHV93996.1 - 4.8e-05 23.6 0.0 0.28 11.4 0.0 2.5 2 0 0 2 2 2 2 Ras of Complex, Roc, domain of DAPkinase AAA_18 PF13238.6 AHV93996.1 - 9e-05 23.0 0.0 0.51 10.9 0.0 3.0 2 0 0 2 2 2 2 AAA domain ATPase_2 PF01637.18 AHV93996.1 - 0.00014 21.8 3.6 2.2 8.1 0.1 4.4 3 2 2 5 5 4 1 ATPase domain predominantly from Archaea ABC_tran PF00005.27 AHV93996.1 - 0.00036 21.1 0.1 1.2 9.6 0.0 3.5 3 0 0 3 3 3 1 ABC transporter AAA_28 PF13521.6 AHV93996.1 - 0.00045 20.5 1.1 1.8 8.8 0.2 3.6 2 1 1 3 3 3 2 AAA domain RuvB_N PF05496.12 AHV93996.1 - 0.00047 19.9 0.4 3.4 7.4 0.5 3.6 2 1 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain Mg_chelatase PF01078.21 AHV93996.1 - 0.00067 19.1 0.0 0.79 9.1 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI RsgA_GTPase PF03193.16 AHV93996.1 - 0.00089 19.2 0.0 1.2 9.0 0.0 2.6 2 0 0 2 2 2 2 RsgA GTPase RNA_helicase PF00910.22 AHV93996.1 - 0.00093 19.6 0.0 2.2 8.7 0.0 2.7 2 0 0 2 2 2 2 RNA helicase TsaE PF02367.17 AHV93996.1 - 0.00094 19.2 0.0 2.1 8.3 0.0 2.7 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_14 PF13173.6 AHV93996.1 - 0.001 19.1 0.0 0.26 11.3 0.0 2.7 2 0 0 2 2 2 1 AAA domain Sigma54_activat PF00158.26 AHV93996.1 - 0.0011 18.7 0.0 0.95 9.1 0.0 2.6 2 1 0 2 2 2 1 Sigma-54 interaction domain DUF815 PF05673.13 AHV93996.1 - 0.0014 17.9 0.0 0.15 11.2 0.0 2.6 2 1 0 2 2 2 1 Protein of unknown function (DUF815) Bac_DnaA PF00308.18 AHV93996.1 - 0.0014 18.5 0.3 2.9 7.6 0.0 3.6 3 0 0 3 3 3 1 Bacterial dnaA protein ResIII PF04851.15 AHV93996.1 - 0.0027 17.7 0.0 8.7 6.3 0.0 3.5 2 1 0 3 3 3 0 Type III restriction enzyme, res subunit Zeta_toxin PF06414.12 AHV93996.1 - 0.0065 15.8 0.0 1.7 7.9 0.0 2.9 2 0 0 2 2 2 1 Zeta toxin NACHT PF05729.12 AHV93996.1 - 0.0085 16.0 0.0 1.1 9.2 0.0 2.6 2 0 0 2 2 2 1 NACHT domain AAA_19 PF13245.6 AHV93996.1 - 0.0095 16.3 0.0 0.45 10.8 0.1 2.6 2 1 0 2 2 2 1 AAA domain AAA_33 PF13671.6 AHV93996.1 - 0.012 15.8 0.0 12 6.1 0.0 3.4 3 0 0 3 3 3 0 AAA domain AAA_29 PF13555.6 AHV93996.1 - 0.013 15.2 0.0 8.2 6.2 0.0 2.5 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_24 PF13479.6 AHV93996.1 - 0.017 14.8 0.0 4.7 6.9 0.0 2.8 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 AHV93996.1 - 0.03 14.4 0.0 7.1 6.8 0.0 3.1 3 0 0 3 3 3 0 50S ribosome-binding GTPase NTPase_1 PF03266.15 AHV93996.1 - 0.032 14.1 0.1 3.9 7.4 0.0 3.2 3 0 0 3 3 3 0 NTPase Ras PF00071.22 AHV93996.1 - 0.052 13.2 0.0 3.5 7.2 0.0 2.6 2 0 0 2 2 2 0 Ras family AAA_23 PF13476.6 AHV93996.1 - 0.061 13.8 12.3 0.75 10.3 0.0 3.8 2 1 0 2 2 1 0 AAA domain ATP_bind_1 PF03029.17 AHV93996.1 - 0.065 13.0 0.0 4 7.1 0.0 2.5 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein PduV-EutP PF10662.9 AHV93996.1 - 0.12 12.1 0.0 3.3 7.5 0.0 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_15 PF13175.6 AHV93996.1 - 0.14 11.9 0.2 20 4.7 0.4 2.9 3 0 0 3 3 3 0 AAA ATPase domain FliJ PF02050.16 AHV93996.1 - 0.27 11.5 9.9 0.46 10.7 5.3 2.7 1 1 1 2 2 2 0 Flagellar FliJ protein DUF3818 PF12825.7 AHV93996.1 - 0.64 9.0 3.2 1.1 8.2 3.2 1.3 1 0 0 1 1 1 0 Domain of unknown function in PX-proteins (DUF3818) GARS_A PF01071.19 AHV93997.1 - 6.8e-76 254.4 0.0 1e-75 253.8 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_C PF02843.16 AHV93997.1 - 2.2e-29 101.6 0.5 9.4e-29 99.5 0.1 2.2 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp PF02222.22 AHV93997.1 - 0.00029 20.5 0.0 0.00042 19.9 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain RimK PF08443.11 AHV93997.1 - 0.0011 18.6 0.0 0.0017 18.0 0.0 1.3 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GARS_N PF02844.15 AHV93997.1 - 0.006 17.3 0.0 0.014 16.2 0.0 1.7 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain CPSase_L_D2 PF02786.17 AHV93997.1 - 0.0097 15.4 0.0 0.017 14.7 0.0 1.4 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_2 PF08442.10 AHV93997.1 - 0.025 14.2 0.1 0.042 13.4 0.1 1.3 1 0 0 1 1 1 0 ATP-grasp domain ATP-grasp_3 PF02655.14 AHV93997.1 - 0.032 14.3 0.0 0.047 13.7 0.0 1.2 1 0 0 1 1 1 0 ATP-grasp domain LAL_C2 PF18603.1 AHV93997.1 - 0.042 14.0 0.9 1.2 9.3 0.1 3.1 3 0 0 3 3 3 0 L-amino acid ligase C-terminal domain 2 ATP-grasp_4 PF13535.6 AHV93997.1 - 0.088 12.4 0.0 0.18 11.4 0.0 1.5 1 0 0 1 1 1 0 ATP-grasp domain ABC_tran PF00005.27 AHV93998.1 - 3.2e-29 102.2 0.0 4.4e-29 101.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.8 AHV93998.1 - 1.4e-07 31.3 0.0 2.4e-07 30.5 0.0 1.4 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_21 PF13304.6 AHV93998.1 - 2.5e-07 30.8 0.1 0.00083 19.2 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 AHV93998.1 - 0.00032 20.7 0.1 0.00055 19.9 0.1 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_23 PF13476.6 AHV93998.1 - 0.0012 19.4 0.1 0.0015 19.1 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 AHV93998.1 - 0.0015 18.2 0.0 0.0029 17.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 AHV93998.1 - 0.003 18.0 0.5 0.025 15.0 0.5 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 AHV93998.1 - 0.0037 17.5 0.0 0.0071 16.6 0.0 1.7 1 1 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.23 AHV93998.1 - 0.016 15.3 0.0 0.029 14.4 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_15 PF13175.6 AHV93998.1 - 0.053 13.2 0.0 0.18 11.5 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain AAA_28 PF13521.6 AHV93998.1 - 0.061 13.6 0.0 0.1 12.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 AHV93998.1 - 0.1 12.1 0.1 0.46 10.0 0.1 1.9 2 0 0 2 2 2 0 AAA domain MutS_V PF00488.21 AHV93998.1 - 0.1 12.6 0.4 4.8 7.1 0.0 2.3 2 1 0 2 2 2 0 MutS domain V SMC_N PF02463.19 AHV93998.1 - 0.21 11.0 0.0 0.42 10.0 0.0 1.4 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain VlpA_repeat PF04649.12 AHV93999.1 - 0.0055 16.7 0.6 0.0076 16.3 0.6 1.2 1 0 0 1 1 1 1 Mycoplasma hyorhinis VlpA repeat Cytochrom_C_2 PF01322.20 AHV94000.1 - 5.1e-36 124.2 0.0 6.8e-36 123.8 0.0 1.2 1 0 0 1 1 1 1 Cytochrome C' Cytochrom_B562 PF07361.11 AHV94000.1 - 0.00065 20.3 0.0 0.0015 19.1 0.0 1.7 1 1 1 2 2 2 1 Cytochrome b562 PBP_like PF12727.7 AHV94001.1 - 1.4e-39 135.2 0.0 1.6e-39 135.0 0.0 1.0 1 0 0 1 1 1 1 PBP superfamily domain Phosphonate-bd PF12974.7 AHV94001.1 - 2.1e-06 27.5 0.0 2.6e-06 27.2 0.0 1.1 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein SBP_bac_11 PF13531.6 AHV94001.1 - 6.3e-05 22.8 0.0 8.9e-05 22.3 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein LysR_substrate PF03466.20 AHV94001.1 - 0.00098 18.5 0.3 0.0013 18.1 0.3 1.1 1 0 0 1 1 1 1 LysR substrate binding domain M_domain PF12938.7 AHV94002.1 - 0.055 13.3 0.0 0.06 13.1 0.0 1.0 1 0 0 1 1 1 0 M domain of GW182 BPD_transp_1 PF00528.22 AHV94003.1 - 5.8e-46 156.6 14.3 5.8e-46 156.6 14.3 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component FKBP_C PF00254.28 AHV94004.1 - 1.5e-09 38.1 0.0 2e-09 37.7 0.0 1.2 1 0 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase BPD_transp_1 PF00528.22 AHV94005.1 - 1.1e-17 64.4 22.7 2.3e-17 63.4 13.3 2.1 1 1 1 2 2 2 2 Binding-protein-dependent transport system inner membrane component Acyl-CoA_dh_1 PF00441.24 AHV94006.1 - 1.2e-26 93.7 9.8 3.2e-13 50.1 5.5 2.3 2 0 0 2 2 2 2 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 AHV94006.1 - 2.4e-21 75.8 0.0 4.3e-21 74.9 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 AHV94006.1 - 1.3e-07 32.0 5.2 1.5e-05 25.3 4.5 2.8 2 1 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain HpaB_N PF11794.8 AHV94006.1 - 0.00096 18.9 0.7 0.0027 17.4 0.7 1.6 1 1 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase N terminal Acyl-CoA_dh_N PF02771.16 AHV94006.1 - 0.0017 19.0 0.0 0.0049 17.5 0.0 1.8 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Glyco_trans_1_4 PF13692.6 AHV94007.1 - 1.7e-05 25.3 0.0 3.6e-05 24.2 0.0 1.6 1 1 0 1 1 1 1 Glycosyl transferases group 1 SLBB PF10531.9 AHV94009.1 - 3.8e-05 23.5 0.0 8e-05 22.4 0.0 1.6 1 0 0 1 1 1 1 SLBB domain HTH_1 PF00126.27 AHV94010.1 - 7.8e-20 70.6 0.8 1.2e-19 70.0 0.8 1.3 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_Tnp_ISL3 PF13542.6 AHV94010.1 - 0.0024 17.2 0.1 0.0042 16.5 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 MarR_2 PF12802.7 AHV94010.1 - 0.0069 16.3 0.4 0.01 15.7 0.4 1.3 1 0 0 1 1 1 1 MarR family HTH_37 PF13744.6 AHV94010.1 - 0.18 11.8 0.0 0.3 11.1 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Exonuc_VII_L PF02601.15 AHV94011.1 - 1.7e-94 316.8 3.5 2.1e-94 316.5 3.5 1.1 1 0 0 1 1 1 1 Exonuclease VII, large subunit tRNA_anti_2 PF13742.6 AHV94011.1 - 6e-30 103.3 0.0 1.3e-29 102.2 0.0 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti-codon PF01336.25 AHV94011.1 - 1.1e-06 28.5 0.0 2.6e-06 27.3 0.0 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain FTA4 PF13093.6 AHV94011.1 - 0.022 14.7 0.1 0.036 14.0 0.1 1.5 1 0 0 1 1 1 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 S1-like PF14444.6 AHV94011.1 - 0.098 12.6 0.1 0.4 10.6 0.0 1.9 2 0 0 2 2 2 0 S1-like Atg14 PF10186.9 AHV94011.1 - 1.1 8.3 5.0 1.6 7.7 5.0 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 CorA PF01544.18 AHV94011.1 - 2 7.6 4.0 3.2 7.0 4.0 1.2 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein Flp_Fap PF04964.14 AHV94012.1 - 2.6e-20 71.9 1.4 3.1e-20 71.7 1.4 1.1 1 0 0 1 1 1 1 Flp/Fap pilin component Flp1_like PF16982.5 AHV94012.1 - 0.0034 16.7 0.2 0.006 16.0 0.2 1.6 1 1 0 1 1 1 1 Putative Flagellin, Flp1-like, domain DUF108 PF01958.18 AHV94013.1 - 3.5e-29 101.0 0.2 5.6e-29 100.4 0.2 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF108 NAD_binding_3 PF03447.16 AHV94013.1 - 2.7e-16 60.3 0.0 4.3e-16 59.6 0.0 1.3 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain DapB_N PF01113.20 AHV94013.1 - 1.7e-06 28.1 0.0 2.8e-06 27.5 0.0 1.3 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus GFO_IDH_MocA PF01408.22 AHV94013.1 - 1.4e-05 25.9 0.0 2.9e-05 24.9 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold 2-Hacid_dh_C PF02826.19 AHV94013.1 - 0.00026 20.4 0.0 0.00045 19.6 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.24 AHV94013.1 - 0.00043 20.7 0.0 0.00083 19.8 0.0 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain F420_oxidored PF03807.17 AHV94013.1 - 0.0046 17.5 0.0 0.013 16.0 0.0 1.8 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent CoA_binding_2 PF13380.6 AHV94013.1 - 0.023 15.2 0.0 0.079 13.5 0.0 1.9 1 1 1 2 2 2 0 CoA binding domain Sacchrp_dh_NADP PF03435.18 AHV94013.1 - 0.037 14.3 0.1 0.26 11.6 0.1 2.5 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Rossmann-like PF10727.9 AHV94013.1 - 0.093 12.6 1.3 0.14 12.0 0.2 1.8 2 0 0 2 2 2 0 Rossmann-like domain TPP_enzyme_N PF02776.18 AHV94014.1 - 3.1e-60 202.7 0.4 7.7e-59 198.1 0.3 2.2 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 AHV94014.1 - 1.8e-49 167.4 0.0 1.3e-47 161.4 0.0 2.5 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.22 AHV94014.1 - 1.5e-48 164.0 0.1 2.7e-48 163.2 0.1 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain POR_N PF01855.19 AHV94014.1 - 0.076 12.7 0.1 0.12 12.1 0.1 1.3 1 0 0 1 1 1 0 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Hydrolase_3 PF08282.12 AHV94015.1 - 2e-10 40.9 0.0 3.5e-08 33.5 0.0 2.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 AHV94015.1 - 1.6e-06 28.6 2.3 0.00098 19.5 0.1 2.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 AHV94015.1 - 5.9e-05 23.2 0.3 0.0035 17.4 0.0 2.7 1 1 1 2 2 2 1 Haloacid dehalogenase-like hydrolase HAD PF12710.7 AHV94015.1 - 0.00014 22.4 2.6 0.0014 19.1 0.2 2.5 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 AHV94015.1 - 0.0099 16.0 0.0 0.025 14.7 0.0 1.7 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase MltA PF03562.17 AHV94016.1 - 1.2e-79 267.2 0.0 1.6e-79 266.8 0.0 1.2 1 0 0 1 1 1 1 MltA specific insert domain 3D PF06725.11 AHV94016.1 - 1.4e-23 82.8 0.0 2.6e-23 82.0 0.0 1.4 1 0 0 1 1 1 1 3D domain XPC-binding PF09280.11 AHV94016.1 - 0.11 12.2 0.3 0.2 11.4 0.3 1.3 1 0 0 1 1 1 0 XPC-binding domain LysR_substrate PF03466.20 AHV94017.1 - 2.4e-37 128.3 4.4 2.4e-37 128.3 4.4 1.5 2 0 0 2 2 2 1 LysR substrate binding domain HTH_1 PF00126.27 AHV94017.1 - 1.3e-16 60.3 0.2 2.4e-16 59.4 0.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_30 PF13556.6 AHV94017.1 - 0.022 14.5 0.0 0.049 13.4 0.0 1.5 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain BPD_transp_2 PF02653.16 AHV94018.1 - 1e-52 179.0 41.6 1.2e-52 178.8 41.6 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component NDUF_B12 PF08122.12 AHV94018.1 - 3.5 7.7 7.7 2.1 8.5 0.2 3.3 2 1 1 3 3 3 0 NADH-ubiquinone oxidoreductase B12 subunit family Neurensin PF14927.6 AHV94018.1 - 5.3 6.7 6.8 0.46 10.2 1.6 1.9 2 0 0 2 2 2 0 Neurensin Ribosomal_S19 PF00203.21 AHV94019.1 - 1.4e-37 127.4 0.3 1.6e-37 127.3 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S19 Glyco_trans_1_4 PF13692.6 AHV94021.1 - 0.01 16.3 0.0 0.016 15.6 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferases group 1 HemS PF05171.12 AHV94023.1 - 2.5e-85 282.8 0.0 5.9e-43 145.9 0.0 2.2 2 0 0 2 2 2 2 Haemin-degrading HemS.ChuX domain ChuX_HutX PF06228.13 AHV94023.1 - 4.1e-66 220.8 0.1 5.7e-38 129.7 0.2 2.1 2 0 0 2 2 2 2 Haem utilisation ChuX/HutX HATPase_c PF02518.26 AHV94025.1 - 2e-19 70.2 0.0 4.3e-19 69.1 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 AHV94025.1 - 7.8e-12 45.1 0.1 7.8e-12 45.1 0.1 3.5 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain dCache_1 PF02743.18 AHV94025.1 - 3.4e-10 40.1 0.0 1.2e-09 38.4 0.0 1.8 2 0 0 2 2 2 1 Cache domain HATPase_c_3 PF13589.6 AHV94025.1 - 0.00054 19.8 0.0 0.0012 18.7 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.6 AHV94025.1 - 0.028 14.3 0.0 0.051 13.5 0.0 1.4 1 0 0 1 1 1 0 GHKL domain FbpC_C_terminal PF17845.1 AHV94025.1 - 0.042 14.0 0.1 0.14 12.3 0.1 1.8 1 0 0 1 1 1 0 FbpC C-terminal regulatory nucleotide binding domain HATPase_c_2 PF13581.6 AHV94025.1 - 0.12 12.4 0.0 0.39 10.7 0.0 1.9 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain AIRS_C PF02769.22 AHV94026.1 - 1.1e-36 126.4 0.3 1.7e-36 125.7 0.3 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 AHV94026.1 - 1.5e-14 54.4 1.5 2.4e-14 53.8 0.6 1.9 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain 2CSK_N PF08521.10 AHV94027.1 - 9.3e-35 119.7 0.0 2.2e-34 118.5 0.0 1.7 1 0 0 1 1 1 1 Two-component sensor kinase N-terminal HATPase_c PF02518.26 AHV94027.1 - 2.1e-16 60.4 0.0 3.5e-16 59.7 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 AHV94027.1 - 1.5e-08 34.6 1.1 4.1e-08 33.1 1.1 1.8 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.6 AHV94027.1 - 4.6e-05 23.4 0.0 0.00017 21.6 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 AHV94027.1 - 0.00058 19.7 0.0 0.00097 19.0 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NOD PF06816.13 AHV94027.1 - 0.034 13.8 0.1 0.76 9.4 0.0 2.5 2 0 0 2 2 2 0 NOTCH protein HATPase_c_5 PF14501.6 AHV94027.1 - 0.092 12.7 0.0 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 GHKL domain FMN_dh PF01070.18 AHV94028.1 - 3.2e-114 381.6 0.0 3.6e-114 381.4 0.0 1.0 1 0 0 1 1 1 1 FMN-dependent dehydrogenase NMO PF03060.15 AHV94028.1 - 1.2e-05 24.9 0.8 1.7e-05 24.4 0.8 1.2 1 0 0 1 1 1 1 Nitronate monooxygenase IMPDH PF00478.25 AHV94028.1 - 1.8e-05 24.0 0.2 2.7e-05 23.4 0.2 1.2 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain ThiG PF05690.14 AHV94028.1 - 0.0003 20.2 1.7 0.027 13.8 0.1 3.0 2 1 1 3 3 3 2 Thiazole biosynthesis protein ThiG His_biosynth PF00977.21 AHV94028.1 - 0.0039 16.7 0.0 0.0072 15.8 0.0 1.5 1 0 0 1 1 1 1 Histidine biosynthesis protein Glu_synthase PF01645.17 AHV94028.1 - 0.039 13.1 0.0 0.064 12.4 0.0 1.2 1 0 0 1 1 1 0 Conserved region in glutamate synthase adh_short_C2 PF13561.6 AHV94029.1 - 3.1e-53 180.7 0.8 3.6e-53 180.5 0.8 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 AHV94029.1 - 6.7e-39 133.4 0.4 7.9e-39 133.1 0.4 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 AHV94029.1 - 4e-10 39.9 0.7 6.7e-10 39.2 0.7 1.4 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 AHV94029.1 - 3.4e-07 30.0 0.2 3.1e-05 23.6 0.1 2.8 2 1 0 3 3 3 1 NAD dependent epimerase/dehydratase family Shikimate_DH PF01488.20 AHV94029.1 - 8.3e-05 22.7 0.2 0.00012 22.2 0.2 1.2 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.17 AHV94029.1 - 0.00024 21.6 0.5 0.00062 20.3 0.5 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_10 PF13460.6 AHV94029.1 - 0.004 17.1 4.5 0.0069 16.3 4.5 1.5 1 1 0 1 1 1 1 NAD(P)H-binding 2-Hacid_dh_C PF02826.19 AHV94029.1 - 0.014 14.8 0.1 0.024 14.0 0.1 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DFP PF04127.15 AHV94029.1 - 0.022 14.6 1.3 0.047 13.5 1.0 1.7 2 0 0 2 2 2 0 DNA / pantothenate metabolism flavoprotein RmlD_sub_bind PF04321.17 AHV94029.1 - 0.032 13.4 0.3 0.047 12.8 0.3 1.2 1 0 0 1 1 1 0 RmlD substrate binding domain Big_6 PF17936.1 AHV94029.1 - 0.047 14.0 0.1 0.1 12.9 0.1 1.6 1 1 0 1 1 1 0 Bacterial Ig domain Sacchrp_dh_NADP PF03435.18 AHV94029.1 - 0.061 13.6 0.3 0.1 12.8 0.3 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain 3HCDH_N PF02737.18 AHV94029.1 - 0.065 13.1 0.7 0.11 12.4 0.7 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain THF_DHG_CYH_C PF02882.19 AHV94029.1 - 0.073 12.4 0.1 0.36 10.1 0.0 2.2 2 1 0 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Polysacc_synt_2 PF02719.15 AHV94029.1 - 0.089 11.9 0.0 0.17 10.9 0.0 1.4 2 0 0 2 2 2 0 Polysaccharide biosynthesis protein NAD_binding_7 PF13241.6 AHV94029.1 - 0.17 12.3 0.8 0.51 10.8 0.8 1.8 1 1 0 1 1 1 0 Putative NAD(P)-binding LytR_C PF13399.6 AHV94029.1 - 1.9 9.5 6.0 11 7.1 2.6 2.7 2 1 0 2 2 2 0 LytR cell envelope-related transcriptional attenuator ABC_tran PF00005.27 AHV94030.1 - 3.5e-35 121.5 0.0 4.6e-35 121.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.8 AHV94030.1 - 3e-11 43.0 0.1 4.8e-11 42.3 0.1 1.4 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_21 PF13304.6 AHV94030.1 - 4.2e-09 36.6 1.3 6.2e-05 22.9 0.2 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 AHV94030.1 - 0.0001 21.9 0.1 0.0002 21.0 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 AHV94030.1 - 0.00053 20.6 0.1 0.00087 19.8 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 AHV94030.1 - 0.059 13.1 0.1 0.73 9.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 AHV94030.1 - 0.17 12.3 0.0 0.99 9.8 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.6 AHV94030.1 - 0.19 11.4 0.0 0.2 11.3 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain HTH_1 PF00126.27 AHV94031.1 - 1.7e-11 43.9 0.2 1.8e-11 43.8 0.2 1.0 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family Wzy_C PF04932.15 AHV94032.1 - 8.5e-17 61.2 0.0 8.5e-17 61.2 0.0 4.6 3 1 0 3 3 3 1 O-Antigen ligase Trp_oprn_chp PF09534.10 AHV94032.1 - 0.033 14.0 1.2 0.033 14.0 1.2 3.6 3 1 0 3 3 3 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) DUF2070 PF09843.9 AHV94032.1 - 4.3 5.5 11.3 4.8 5.3 0.1 2.4 2 1 0 2 2 2 0 Predicted membrane protein (DUF2070) Aminotran_1_2 PF00155.21 AHV94033.1 - 2.6e-07 30.2 0.0 2.7e-07 30.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II HATPase_c PF02518.26 AHV94035.1 - 1.4e-13 51.3 0.0 2.4e-13 50.6 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 AHV94035.1 - 1.1e-10 41.3 1.3 1.1e-10 41.3 1.3 2.2 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HAMP PF00672.25 AHV94035.1 - 0.00022 21.5 0.0 0.00074 19.8 0.0 2.0 1 0 0 1 1 1 1 HAMP domain MCPsignal PF00015.21 AHV94035.1 - 0.12 12.1 0.5 0.23 11.3 0.5 1.4 1 0 0 1 1 1 0 Methyl-accepting chemotaxis protein (MCP) signalling domain FliT PF05400.13 AHV94035.1 - 9.6 7.1 7.6 2.6 8.9 3.6 2.0 2 0 0 2 2 2 0 Flagellar protein FliT Lyase_1 PF00206.20 AHV94036.1 - 3e-74 250.2 0.0 3.8e-74 249.9 0.0 1.1 1 0 0 1 1 1 1 Lyase ASL_C2 PF14698.6 AHV94036.1 - 2.2e-27 95.6 1.7 3e-27 95.2 0.2 2.1 2 0 0 2 2 2 1 Argininosuccinate lyase C-terminal RsfS PF02410.15 AHV94037.1 - 1.4e-23 83.1 0.1 1.7e-23 82.9 0.1 1.1 1 0 0 1 1 1 1 Ribosomal silencing factor during starvation DDE_Tnp_ISL3 PF01610.17 AHV94038.1 - 5.8e-39 134.2 1.8 1.5e-22 80.5 0.2 2.7 2 1 1 3 3 3 2 Transposase HTH_Tnp_ISL3 PF13542.6 AHV94038.1 - 1e-11 44.0 0.1 2.7e-11 42.7 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV94038.1 - 4.5e-09 36.8 11.2 8.5e-09 35.9 11.2 1.5 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV94038.1 - 0.0042 17.1 0.2 0.012 15.6 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain NOB1_Zn_bind PF08772.11 AHV94038.1 - 0.011 15.9 0.2 0.95 9.7 0.0 2.5 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like SLT_L PF14718.6 AHV94038.1 - 0.012 15.7 1.5 0.012 15.7 1.5 1.8 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain zf-IS66 PF13005.7 AHV94038.1 - 3.7 8.0 8.8 2.7 8.5 6.6 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 adh_short_C2 PF13561.6 AHV94039.1 - 8.9e-51 172.7 5.4 1.3e-50 172.2 5.4 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 AHV94039.1 - 3.1e-49 167.1 0.9 4e-49 166.7 0.9 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 AHV94039.1 - 8.4e-11 42.1 1.1 1.2e-10 41.6 0.5 1.6 1 1 1 2 2 2 1 KR domain Ribosomal_L17 PF01196.19 AHV94040.1 - 2.9e-35 121.0 0.0 3.5e-35 120.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L17 ABC_tran PF00005.27 AHV94041.1 - 2.4e-27 96.1 0.0 5.1e-27 95.1 0.0 1.5 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 AHV94041.1 - 2e-05 24.6 0.0 0.13 12.0 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 AHV94041.1 - 4.1e-05 24.0 0.7 9.7e-05 22.8 0.7 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 AHV94041.1 - 0.0004 20.7 0.0 0.0013 19.1 0.0 2.0 2 1 0 2 2 1 1 AAA domain RsgA_GTPase PF03193.16 AHV94041.1 - 0.0025 17.7 0.0 0.0042 17.0 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_29 PF13555.6 AHV94041.1 - 0.0033 17.1 0.1 0.0072 16.1 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_33 PF13671.6 AHV94041.1 - 0.0054 16.9 0.1 0.017 15.3 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 AHV94041.1 - 0.0084 15.7 0.3 0.022 14.4 0.1 1.8 2 0 0 2 2 2 1 AAA domain Rad17 PF03215.15 AHV94041.1 - 0.0089 16.0 0.1 0.07 13.0 0.0 2.0 2 0 0 2 2 2 1 Rad17 P-loop domain NTPase_1 PF03266.15 AHV94041.1 - 0.01 15.8 0.0 3.1 7.7 0.0 2.3 2 0 0 2 2 2 1 NTPase NACHT PF05729.12 AHV94041.1 - 0.025 14.5 0.2 0.13 12.2 0.0 2.1 2 0 0 2 2 2 0 NACHT domain AAA_30 PF13604.6 AHV94041.1 - 0.05 13.3 0.3 0.15 11.8 0.1 1.8 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 AHV94041.1 - 0.074 13.3 0.0 0.19 12.0 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 AHV94041.1 - 0.078 13.5 0.0 0.13 12.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 AHV94041.1 - 0.091 13.2 0.1 0.69 10.3 0.1 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) MMR_HSR1 PF01926.23 AHV94041.1 - 0.12 12.5 0.0 0.44 10.7 0.0 2.0 3 0 0 3 3 3 0 50S ribosome-binding GTPase AAA_5 PF07728.14 AHV94041.1 - 0.13 12.2 0.7 0.33 11.0 0.2 1.8 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_18 PF13238.6 AHV94041.1 - 0.14 12.7 0.0 0.4 11.2 0.0 1.9 2 0 0 2 2 1 0 AAA domain PhoH PF02562.16 AHV94041.1 - 0.2 11.1 0.1 0.39 10.1 0.1 1.4 1 0 0 1 1 1 0 PhoH-like protein RNA_helicase PF00910.22 AHV94041.1 - 0.21 12.0 0.0 0.34 11.3 0.0 1.3 1 0 0 1 1 1 0 RNA helicase NB-ARC PF00931.22 AHV94041.1 - 0.27 10.4 0.7 0.38 9.9 0.1 1.5 2 0 0 2 2 2 0 NB-ARC domain FabA PF07977.13 AHV94042.1 - 3.4e-41 140.1 0.0 3.8e-41 139.9 0.0 1.0 1 0 0 1 1 1 1 FabA-like domain 4HBT PF03061.22 AHV94042.1 - 0.00027 21.2 0.1 0.00058 20.2 0.1 1.6 1 1 1 2 2 2 1 Thioesterase superfamily MaoC_dehydratas PF01575.19 AHV94042.1 - 0.011 15.3 0.0 0.015 14.8 0.0 1.2 1 0 0 1 1 1 0 MaoC like domain CDC48_2 PF02933.17 AHV94042.1 - 0.032 14.0 0.2 4.1 7.3 0.0 2.9 2 1 1 3 3 3 0 Cell division protein 48 (CDC48), domain 2 PS-DH PF14765.6 AHV94042.1 - 0.034 13.4 0.5 0.35 10.1 0.3 1.9 1 1 1 2 2 2 0 Polyketide synthase dehydratase BPD_transp_2 PF02653.16 AHV94043.1 - 2.4e-40 138.4 50.0 2.8e-40 138.2 50.0 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component DUF3188 PF11384.8 AHV94043.1 - 1.2 8.9 9.5 0.16 11.7 2.4 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF3188) HIT PF01230.23 AHV94044.1 - 3.1e-15 56.7 3.8 4.7e-15 56.1 3.8 1.3 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 AHV94044.1 - 9.7e-09 35.7 2.7 1.3e-08 35.3 2.7 1.2 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.15 AHV94044.1 - 7.9e-05 22.5 1.2 0.0002 21.2 1.2 1.7 1 1 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 DUF2909 PF11137.8 AHV94046.1 - 1.6e-24 85.6 6.4 1.8e-24 85.4 6.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2909) TctB PF07331.11 AHV94046.1 - 0.012 15.8 2.6 0.018 15.3 2.6 1.2 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family VSP PF03302.13 AHV94046.1 - 0.013 14.4 0.1 0.013 14.4 0.1 1.0 1 0 0 1 1 1 0 Giardia variant-specific surface protein DUF3021 PF11457.8 AHV94046.1 - 0.028 14.8 2.0 0.034 14.5 2.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3021) DUF3087 PF11286.8 AHV94046.1 - 0.64 9.5 2.7 0.67 9.4 2.7 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3087) DUF4574 PF15141.6 AHV94046.1 - 6.8 6.7 6.0 4.6 7.2 1.1 2.0 1 1 1 2 2 2 0 Ubiquinol-cytochrome-c reductase complex assembly factor 3 Methyltransf_23 PF13489.6 AHV94047.1 - 2.9e-05 24.0 0.0 3.4e-05 23.8 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 AHV94047.1 - 6.9e-05 22.7 0.0 9.9e-05 22.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 AHV94047.1 - 0.00066 20.3 0.0 0.0012 19.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 AHV94047.1 - 0.0025 18.5 0.0 0.0041 17.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain ArgoL1 PF08699.10 AHV94047.1 - 0.03 14.0 0.8 3.2 7.5 0.0 2.3 2 0 0 2 2 2 0 Argonaute linker 1 domain Methyltransf_25 PF13649.6 AHV94047.1 - 0.093 13.4 0.0 0.15 12.8 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain CP_ATPgrasp_1 PF04174.13 AHV94048.1 - 5.7e-25 88.0 0.1 7.4e-25 87.7 0.1 1.1 1 0 0 1 1 1 1 A circularly permuted ATPgrasp CP_ATPgrasp_2 PF14403.6 AHV94048.1 - 3.1e-23 82.3 0.3 3.8e-23 82.0 0.3 1.1 1 0 0 1 1 1 1 Circularly permuted ATP-grasp type 2 Pyr_redox_2 PF07992.14 AHV94049.1 - 7.9e-09 35.2 0.2 8.5e-09 35.0 0.2 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 AHV94049.1 - 0.16 11.2 0.0 0.18 11.1 0.0 1.1 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase ABC_membrane PF00664.23 AHV94050.1 - 5.1e-08 32.9 3.9 1.2e-07 31.7 0.1 2.0 1 1 1 2 2 2 2 ABC transporter transmembrane region PdxJ PF03740.13 AHV94051.1 - 1.6e-98 328.5 1.9 1.8e-98 328.3 1.9 1.0 1 0 0 1 1 1 1 Pyridoxal phosphate biosynthesis protein PdxJ BKACE PF05853.12 AHV94051.1 - 0.0058 16.0 1.6 0.0068 15.7 0.7 1.6 1 1 0 1 1 1 1 beta-keto acid cleavage enzyme Dus PF01207.17 AHV94051.1 - 0.12 11.4 0.1 0.22 10.6 0.1 1.3 1 0 0 1 1 1 0 Dihydrouridine synthase (Dus) DUF5326 PF17260.2 AHV94052.1 - 0.045 13.9 1.1 0.059 13.5 1.1 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5326) DUF3341 PF11821.8 AHV94052.1 - 0.12 12.0 1.6 0.2 11.3 1.6 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3341) FtsJ PF01728.19 AHV94053.1 - 8.1e-54 182.4 0.0 9.5e-54 182.2 0.0 1.0 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_23 PF13489.6 AHV94053.1 - 0.044 13.6 0.0 0.096 12.5 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain HTH_Tnp_IS1 PF12759.7 AHV94053.1 - 0.18 11.5 0.0 1.8 8.2 0.0 2.5 2 0 0 2 2 2 0 InsA C-terminal domain CDP-OH_P_transf PF01066.21 AHV94054.1 - 1.9e-13 51.0 0.6 1.9e-13 51.0 0.6 3.0 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase OST3_OST6 PF04756.13 AHV94054.1 - 0.59 9.4 2.6 0.38 10.1 0.8 1.5 2 0 0 2 2 2 0 OST3 / OST6 family, transporter family TctC PF03401.14 AHV94055.1 - 1.1e-95 319.8 0.2 1.6e-95 319.3 0.2 1.2 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor SBP_bac_8 PF13416.6 AHV94055.1 - 0.0067 16.3 0.1 0.014 15.2 0.1 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein Citrate_synt PF00285.21 AHV94056.1 - 8e-126 419.9 0.0 9.4e-126 419.7 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase, C-terminal domain Pirin_C PF05726.13 AHV94057.1 - 5.6e-27 94.1 0.0 7.6e-27 93.7 0.0 1.2 1 0 0 1 1 1 1 Pirin C-terminal cupin domain Pirin PF02678.16 AHV94057.1 - 0.0014 18.6 0.1 0.0023 17.9 0.1 1.4 1 0 0 1 1 1 1 Pirin Pirin_C_2 PF17954.1 AHV94057.1 - 0.01 16.0 0.0 0.015 15.5 0.0 1.3 1 0 0 1 1 1 0 Quercetinase C-terminal cupin domain adh_short PF00106.25 AHV94058.1 - 2.5e-47 160.9 2.4 3e-47 160.6 2.4 1.0 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 AHV94058.1 - 6.7e-39 133.8 4.4 8.4e-39 133.5 4.4 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 AHV94058.1 - 4.8e-14 52.7 2.8 6.3e-14 52.3 2.8 1.1 1 0 0 1 1 1 1 KR domain DUF3418 PF11898.8 AHV94059.1 - 9.6e-210 698.2 3.4 9.6e-210 698.2 3.4 1.4 2 0 0 2 2 2 1 Domain of unknown function (DUF3418) HA2 PF04408.23 AHV94059.1 - 1.6e-16 60.5 0.0 5.5e-16 58.8 0.0 1.9 2 0 0 2 2 2 1 Helicase associated domain (HA2) OB_NTP_bind PF07717.16 AHV94059.1 - 2.4e-15 56.6 0.0 5e-15 55.6 0.0 1.5 1 0 0 1 1 1 1 Oligonucleotide/oligosaccharide-binding (OB)-fold Helicase_C PF00271.31 AHV94059.1 - 6.3e-14 52.3 0.0 1.4e-13 51.1 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.29 AHV94059.1 - 1e-05 25.4 0.0 2.9e-05 23.9 0.0 1.7 1 1 0 1 1 1 1 DEAD/DEAH box helicase AAA_19 PF13245.6 AHV94059.1 - 1.2e-05 25.7 0.0 2.7e-05 24.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain T2SSE PF00437.20 AHV94059.1 - 6.6e-05 22.1 0.0 0.00016 20.9 0.0 1.5 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_22 PF13401.6 AHV94059.1 - 0.00065 20.0 0.0 0.0033 17.7 0.0 2.2 1 0 0 1 1 1 1 AAA domain DUF2075 PF09848.9 AHV94059.1 - 0.002 17.4 0.0 0.0039 16.5 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) NACHT PF05729.12 AHV94059.1 - 0.0026 17.7 0.3 0.012 15.6 0.1 2.2 2 1 0 2 2 2 1 NACHT domain AAA_30 PF13604.6 AHV94059.1 - 0.0083 15.9 0.1 0.023 14.4 0.1 1.7 1 0 0 1 1 1 1 AAA domain SRP54 PF00448.22 AHV94059.1 - 0.053 13.2 0.0 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain PhoH PF02562.16 AHV94059.1 - 0.054 12.9 0.0 0.19 11.2 0.0 1.9 2 0 0 2 2 2 0 PhoH-like protein AAA_25 PF13481.6 AHV94059.1 - 0.054 13.1 0.0 0.28 10.7 0.0 2.3 2 0 0 2 2 2 0 AAA domain CbiA PF01656.23 AHV94059.1 - 0.11 12.6 0.0 0.36 10.9 0.0 1.9 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain TsaE PF02367.17 AHV94059.1 - 0.2 11.7 0.0 0.45 10.5 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE FecR PF04773.13 AHV94060.1 - 7.3e-22 77.8 1.4 2.2e-21 76.3 1.7 1.6 2 0 0 2 2 2 1 FecR protein DUF4880 PF16220.5 AHV94060.1 - 6.6e-09 35.5 10.5 1.7e-08 34.2 10.5 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF4880) CheD PF03975.13 AHV94061.1 - 3.6e-32 110.7 0.1 1.1e-31 109.1 0.1 1.7 2 0 0 2 2 2 1 CheD chemotactic sensory transduction Peptidase_M3 PF01432.20 AHV94063.1 - 3.8e-130 435.2 0.0 4.6e-130 434.9 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M3 Peptidase_M50B PF13398.6 AHV94063.1 - 0.92 9.1 3.4 0.45 10.1 0.2 1.9 2 0 0 2 2 2 0 Peptidase M50B-like FecR PF04773.13 AHV94064.1 - 1.6e-09 38.3 0.4 1.4e-08 35.3 0.1 2.0 1 1 1 2 2 2 2 FecR protein Abhydrolase_1 PF00561.20 AHV94065.1 - 5.7e-35 121.2 0.1 6.8e-35 120.9 0.1 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold Esterase PF00756.20 AHV94065.1 - 0.0093 15.6 0.0 0.013 15.1 0.0 1.3 1 0 0 1 1 1 1 Putative esterase Peptidase_S9 PF00326.21 AHV94065.1 - 0.075 12.5 0.0 7.8 5.9 0.0 2.3 2 0 0 2 2 2 0 Prolyl oligopeptidase family eIF-1a PF01176.19 AHV94066.1 - 2.5e-22 78.4 0.1 2.9e-22 78.2 0.1 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 RsgA_N PF16745.5 AHV94066.1 - 0.0051 16.5 0.4 0.019 14.7 0.1 1.9 1 1 1 2 2 2 1 RsgA N-terminal domain TOBE_2 PF08402.10 AHV94066.1 - 0.092 12.9 0.0 0.13 12.5 0.0 1.3 1 0 0 1 1 1 0 TOBE domain CoA_transf_3 PF02515.17 AHV94067.1 - 1.2e-122 409.6 0.1 1.3e-122 409.5 0.1 1.0 1 0 0 1 1 1 1 CoA-transferase family III BMFP PF04380.13 AHV94068.1 - 5.8e-25 87.6 4.6 7e-25 87.3 4.6 1.1 1 0 0 1 1 1 1 Membrane fusogenic activity HSBP1 PF06825.12 AHV94068.1 - 0.0025 17.6 0.1 0.71 9.8 0.0 2.6 3 0 0 3 3 3 1 Heat shock factor binding protein 1 DUF1631 PF07793.11 AHV94068.1 - 0.0039 15.7 3.2 0.004 15.7 3.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1631) LPP PF04728.13 AHV94068.1 - 0.0054 17.1 0.1 0.027 14.9 0.0 2.0 2 0 0 2 2 2 1 Lipoprotein leucine-zipper SlyX PF04102.12 AHV94068.1 - 0.032 14.8 3.1 0.042 14.5 0.8 2.0 2 0 0 2 2 2 0 SlyX DUF745 PF05335.13 AHV94068.1 - 0.046 13.4 1.1 0.055 13.2 0.7 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF745) BLOC1_2 PF10046.9 AHV94068.1 - 0.09 13.1 0.6 0.25 11.7 0.3 1.8 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 NPV_P10 PF05531.12 AHV94068.1 - 0.16 12.4 1.6 1.1 9.7 1.6 2.1 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein DUF4349 PF14257.6 AHV94068.1 - 0.21 11.0 4.4 0.26 10.7 4.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4349) ABM PF03992.16 AHV94069.1 - 2.4e-12 46.8 0.8 3e-12 46.5 0.8 1.1 1 0 0 1 1 1 1 Antibiotic biosynthesis monooxygenase PilS PF08805.11 AHV94070.1 - 3.1e-06 27.0 0.0 4e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 PilS N terminal KdpD PF02702.17 AHV94071.1 - 3.6e-94 314.1 0.7 4.6e-93 310.5 0.1 2.2 2 0 0 2 2 2 1 Osmosensitive K+ channel His kinase sensor domain DUF4118 PF13493.6 AHV94071.1 - 4e-30 103.7 15.7 8.3e-30 102.7 15.7 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4118) HisKA PF00512.25 AHV94071.1 - 6.4e-14 51.7 2.2 6.4e-14 51.7 2.2 2.5 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain GAF_3 PF13492.6 AHV94071.1 - 2.7e-10 40.7 1.8 1.3e-09 38.5 0.2 2.7 2 0 0 2 2 2 1 GAF domain AAA_30 PF13604.6 AHV94071.1 - 0.005 16.6 0.2 0.015 15.0 0.2 1.8 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 AHV94071.1 - 0.18 12.1 0.2 0.58 10.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain Usp PF00582.26 AHV94071.1 - 2.5 8.6 8.9 0.32 11.5 2.0 3.1 2 1 0 2 2 2 0 Universal stress protein family CCD PF07860.11 AHV94072.1 - 0.22 11.6 0.7 0.34 10.9 0.7 1.2 1 0 0 1 1 1 0 WisP family C-Terminal Region Peptidase_U4 PF03419.13 AHV94072.1 - 3.5 6.8 8.3 4.4 6.5 8.3 1.0 1 0 0 1 1 1 0 Sporulation factor SpoIIGA Acetyltransf_5 PF13444.6 AHV94073.1 - 1.3e-32 112.5 0.0 2e-32 111.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Autoind_synth PF00765.17 AHV94073.1 - 0.00043 19.9 0.0 0.00055 19.5 0.0 1.2 1 0 0 1 1 1 1 Autoinducer synthase Acetyltransf_9 PF13527.7 AHV94073.1 - 0.071 13.2 0.1 1.3 9.1 0.0 2.1 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain LisH_2 PF16045.5 AHV94073.1 - 0.13 11.3 0.1 0.28 10.2 0.1 1.5 1 0 0 1 1 1 0 LisH DUF502 PF04367.13 AHV94074.1 - 1.6e-21 76.2 0.1 1.6e-21 76.2 0.1 1.9 3 0 0 3 3 3 1 Protein of unknown function (DUF502) MASE1 PF05231.14 AHV94074.1 - 0.082 12.0 10.0 0.037 13.2 5.2 2.0 2 0 0 2 2 2 0 MASE1 FeoB_C PF07664.12 AHV94074.1 - 0.13 11.9 5.3 0.14 11.8 0.4 2.5 2 0 0 2 2 2 0 Ferrous iron transport protein B C terminus DUF4577 PF15145.6 AHV94074.1 - 0.39 10.8 0.9 0.82 9.7 0.9 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4577) EPV_E5 PF08135.11 AHV94074.1 - 9.5 6.7 11.5 0.31 11.4 3.2 2.2 2 0 0 2 2 2 0 Major transforming protein E5 family UvrD-helicase PF00580.21 AHV94075.1 - 7.6e-56 189.9 0.0 6.2e-27 95.0 0.3 2.2 1 1 0 2 2 2 2 UvrD/REP helicase N-terminal domain AAA_19 PF13245.6 AHV94075.1 - 7.6e-32 110.7 0.0 1.3e-31 110.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain UvrD_C PF13361.6 AHV94075.1 - 6.3e-13 48.8 0.0 8.8e-13 48.3 0.0 1.1 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain AAA_30 PF13604.6 AHV94075.1 - 1.7e-08 34.4 3.2 6.4e-05 22.8 0.5 2.4 2 1 0 2 2 2 2 AAA domain NACHT PF05729.12 AHV94075.1 - 0.041 13.8 0.0 0.091 12.7 0.0 1.5 1 0 0 1 1 1 0 NACHT domain Acetyltransf_10 PF13673.7 AHV94076.1 - 0.012 15.5 0.0 0.013 15.4 0.0 1.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 AHV94076.1 - 0.022 15.0 0.0 0.026 14.8 0.0 1.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.7 AHV94076.1 - 0.1 13.2 0.0 0.12 13.1 0.0 1.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain FR47 PF08445.10 AHV94076.1 - 0.13 12.2 0.0 0.14 12.1 0.0 1.1 1 0 0 1 1 1 0 FR47-like protein Acetyltransf_4 PF13420.7 AHV94076.1 - 0.14 12.3 0.0 0.16 12.1 0.0 1.0 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF4198 PF10670.9 AHV94078.1 - 1.9e-11 44.8 3.4 2.3e-10 41.2 0.8 2.2 1 1 1 2 2 2 2 Domain of unknown function (DUF4198) CarboxypepD_reg PF13620.6 AHV94078.1 - 0.00056 20.1 0.0 0.0011 19.2 0.0 1.5 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 AHV94078.1 - 0.064 13.3 0.0 0.11 12.5 0.0 1.4 1 0 0 1 1 1 0 CarboxypepD_reg-like domain Entericidin PF08085.11 AHV94079.1 - 1.2e-08 34.7 5.3 1.9e-08 34.1 5.3 1.3 1 0 0 1 1 1 1 Entericidin EcnA/B family DDE_Tnp_1_assoc PF13808.6 AHV94079.1 - 0.18 11.9 0.0 0.18 11.9 0.0 1.1 1 0 0 1 1 1 0 DDE_Tnp_1-associated DALR_1 PF05746.15 AHV94080.1 - 1.4e-31 109.2 0.0 2.6e-31 108.3 0.0 1.5 1 0 0 1 1 1 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.16 AHV94080.1 - 8.5e-24 84.0 0.2 2.6e-23 82.4 0.1 1.9 2 0 0 2 2 2 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1d PF00750.19 AHV94080.1 - 2.6e-23 82.5 0.0 3.7e-23 82.0 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (R) tRNA-synt_1g PF09334.11 AHV94080.1 - 2.4e-06 26.6 0.6 0.099 11.4 0.0 4.1 3 1 1 4 4 4 2 tRNA synthetases class I (M) tRNA-synt_1f PF01921.18 AHV94080.1 - 4.3e-06 25.9 0.0 0.00067 18.7 0.0 2.9 3 0 0 3 3 3 1 tRNA synthetases class I (K) tRNA-synt_1 PF00133.22 AHV94080.1 - 1.4e-05 23.6 0.0 0.033 12.4 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1e PF01406.19 AHV94080.1 - 0.00025 20.5 0.0 0.23 10.8 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1c PF00749.21 AHV94080.1 - 0.22 10.4 0.1 0.98 8.2 0.0 2.1 3 0 0 3 3 3 0 tRNA synthetases class I (E and Q), catalytic domain Peripla_BP_6 PF13458.6 AHV94082.1 - 3e-61 208.0 11.9 3.7e-61 207.7 11.9 1.0 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.28 AHV94082.1 - 1.6e-30 106.4 0.0 2e-30 106.1 0.0 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.6 AHV94082.1 - 3.2e-21 75.8 0.6 4.1e-21 75.4 0.6 1.1 1 0 0 1 1 1 1 Periplasmic binding protein domain Fe-ADH PF00465.19 AHV94082.1 - 0.00063 18.7 0.0 0.0011 17.9 0.0 1.4 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Bmp PF02608.14 AHV94082.1 - 0.0061 15.6 0.0 0.011 14.7 0.0 1.4 1 0 0 1 1 1 1 ABC transporter substrate-binding protein PnrA-like DUF928 PF06051.12 AHV94082.1 - 0.083 12.7 0.0 0.13 12.1 0.0 1.2 1 0 0 1 1 1 0 Domain of Unknown Function (DUF928) HD PF01966.22 AHV94083.1 - 1.6e-21 76.7 0.5 2.4e-21 76.2 0.5 1.2 1 0 0 1 1 1 1 HD domain HD_5 PF13487.6 AHV94083.1 - 2.9e-16 59.5 0.3 6e-16 58.5 0.3 1.6 1 0 0 1 1 1 1 HD domain HDOD PF08668.12 AHV94083.1 - 0.0037 16.8 1.4 0.012 15.0 1.4 1.9 1 1 0 1 1 1 1 HDOD domain Colicin_V PF02674.16 AHV94084.1 - 2.4e-32 111.9 12.3 2.9e-32 111.6 12.3 1.0 1 0 0 1 1 1 1 Colicin V production protein FtsX PF02687.21 AHV94084.1 - 0.8 10.2 13.3 0.54 10.8 9.7 2.3 2 1 0 2 2 2 0 FtsX-like permease family TctC PF03401.14 AHV94085.1 - 2.7e-58 197.2 0.1 3.4e-58 196.9 0.1 1.1 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor COX3 PF00510.18 AHV94086.1 - 1.1e-09 38.5 12.4 2.3e-09 37.5 12.3 1.5 1 1 0 1 1 1 1 Cytochrome c oxidase subunit III Amidase_2 PF01510.25 AHV94087.1 - 1.2e-21 77.5 0.0 1.4e-21 77.2 0.0 1.1 1 0 0 1 1 1 1 N-acetylmuramoyl-L-alanine amidase Thymopoietin PF08198.11 AHV94087.1 - 0.16 11.6 0.0 0.3 10.7 0.0 1.5 1 0 0 1 1 1 0 Thymopoietin protein DUF1993 PF09351.10 AHV94088.1 - 6e-12 46.0 1.0 6.4e-12 45.9 1.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1993) Peripla_BP_2 PF01497.18 AHV94089.1 - 2.9e-19 69.6 0.0 4e-19 69.1 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein HAD_2 PF13419.6 AHV94090.1 - 6.9e-26 91.4 0.0 8.2e-26 91.2 0.0 1.0 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase HAD PF12710.7 AHV94090.1 - 1.6e-10 41.7 0.1 2.6e-10 41.0 0.1 1.3 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 AHV94090.1 - 2.2e-09 37.2 0.0 4.6e-09 36.2 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.26 AHV94090.1 - 2.5e-08 34.5 0.1 7.6e-07 29.6 0.1 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Acid_PPase PF12689.7 AHV94090.1 - 0.00032 20.6 0.0 0.008 16.0 0.0 2.7 1 1 0 1 1 1 1 Acid Phosphatase Hydrolase_6 PF13344.6 AHV94090.1 - 0.0029 17.7 0.0 0.017 15.2 0.0 2.1 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 AHV94090.1 - 0.031 14.0 0.1 0.8 9.4 0.0 2.4 3 0 0 3 3 3 0 haloacid dehalogenase-like hydrolase Acyl-CoA_dh_1 PF00441.24 AHV94091.1 - 1.3e-48 165.0 9.9 2.1e-48 164.3 9.9 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 AHV94091.1 - 6e-30 103.3 0.0 1.2e-29 102.4 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_N PF02771.16 AHV94091.1 - 1.1e-25 90.5 0.5 2.9e-25 89.1 0.0 1.9 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.11 AHV94091.1 - 8.5e-23 81.1 7.9 1.5e-22 80.3 7.9 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain HpaB_N PF11794.8 AHV94091.1 - 0.0091 15.7 0.0 0.022 14.4 0.0 1.6 1 1 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase N terminal SNase PF00565.17 AHV94093.1 - 3.1e-18 66.2 0.0 4.1e-18 65.8 0.0 1.2 1 0 0 1 1 1 1 Staphylococcal nuclease homologue AA_kinase PF00696.28 AHV94094.1 - 3.1e-43 148.1 1.5 3.6e-43 147.9 1.5 1.0 1 0 0 1 1 1 1 Amino acid kinase family ZnuA PF01297.17 AHV94095.1 - 5e-72 242.4 0.0 5.6e-72 242.2 0.0 1.0 1 0 0 1 1 1 1 Zinc-uptake complex component A periplasmic ABC_tran PF00005.27 AHV94096.1 - 9.1e-35 120.2 0.0 1.2e-34 119.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 AHV94096.1 - 1.5e-17 63.9 0.3 2.6e-17 63.1 0.3 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 AHV94096.1 - 1.1e-07 31.9 0.1 0.00012 22.0 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 AHV94096.1 - 4e-07 30.6 0.2 9.4e-07 29.4 0.2 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 AHV94096.1 - 2.1e-05 24.8 0.1 0.00011 22.5 0.1 1.9 1 1 0 1 1 1 1 AAA domain ATP-synt_ab PF00006.25 AHV94096.1 - 0.0013 18.4 0.0 0.0013 18.4 0.0 1.1 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain Zeta_toxin PF06414.12 AHV94096.1 - 0.0031 16.8 0.0 0.0049 16.2 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin AAA_5 PF07728.14 AHV94096.1 - 0.0045 17.0 0.1 0.014 15.4 0.0 1.9 1 1 0 2 2 2 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.26 AHV94096.1 - 0.0054 16.5 0.0 0.14 11.8 0.0 2.3 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_30 PF13604.6 AHV94096.1 - 0.023 14.4 0.0 0.3 10.8 0.0 2.1 1 1 0 1 1 1 0 AAA domain PRK PF00485.18 AHV94096.1 - 0.026 14.2 0.0 0.053 13.3 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family APS_kinase PF01583.20 AHV94096.1 - 0.035 14.0 0.0 0.072 13.0 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_24 PF13479.6 AHV94096.1 - 0.047 13.4 0.0 0.15 11.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_7 PF12775.7 AHV94096.1 - 0.066 12.7 0.0 0.1 12.1 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_33 PF13671.6 AHV94096.1 - 0.068 13.3 0.8 0.5 10.5 0.1 2.1 1 1 0 2 2 2 0 AAA domain AAA PF00004.29 AHV94096.1 - 0.071 13.5 0.0 0.43 11.0 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 AHV94096.1 - 0.075 12.8 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF87 PF01935.17 AHV94096.1 - 0.079 13.0 0.0 0.14 12.2 0.0 1.5 1 0 0 1 1 1 0 Helicase HerA, central domain RNA_helicase PF00910.22 AHV94096.1 - 0.085 13.3 0.0 0.15 12.4 0.0 1.4 1 0 0 1 1 1 0 RNA helicase RsgA_GTPase PF03193.16 AHV94096.1 - 0.11 12.4 0.1 0.18 11.7 0.1 1.3 1 0 0 1 1 1 0 RsgA GTPase Mg_chelatase PF01078.21 AHV94096.1 - 0.13 11.6 0.0 0.21 10.9 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Sigma54_activ_2 PF14532.6 AHV94096.1 - 0.14 12.3 0.0 1.7 8.8 0.0 2.2 2 0 0 2 2 2 0 Sigma-54 interaction domain SRP54 PF00448.22 AHV94096.1 - 0.19 11.3 0.0 0.28 10.8 0.0 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain F_bP_aldolase PF01116.20 AHV94097.1 - 3.7e-96 321.9 0.0 5.6e-96 321.3 0.0 1.3 1 1 0 1 1 1 1 Fructose-bisphosphate aldolase class-II Amidohydro_2 PF04909.14 AHV94097.1 - 0.16 11.7 0.1 0.55 10.0 0.0 1.9 2 1 0 2 2 2 0 Amidohydrolase DAO PF01266.24 AHV94098.1 - 3.4e-62 211.1 3.6 3.8e-62 210.9 3.6 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 AHV94098.1 - 3.2e-05 24.1 1.5 8.7e-05 22.7 1.5 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 AHV94098.1 - 0.002 17.3 3.6 0.0029 16.8 3.6 1.3 1 0 0 1 1 1 1 FAD binding domain Thi4 PF01946.17 AHV94098.1 - 0.0063 15.8 0.8 0.013 14.7 0.8 1.4 1 0 0 1 1 1 1 Thi4 family Pyr_redox_2 PF07992.14 AHV94098.1 - 0.014 14.6 0.9 0.028 13.6 0.9 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 AHV94098.1 - 0.015 15.2 0.5 0.027 14.4 0.5 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HI0933_like PF03486.14 AHV94098.1 - 0.09 11.5 2.2 0.15 10.7 2.2 1.3 1 0 0 1 1 1 0 HI0933-like protein FAD_binding_3 PF01494.19 AHV94098.1 - 0.15 11.3 0.7 0.44 9.7 0.7 1.6 2 0 0 2 2 2 0 FAD binding domain Pyr_redox PF00070.27 AHV94098.1 - 0.18 12.4 0.6 0.34 11.5 0.6 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 AHV94098.1 - 0.42 9.9 1.9 0.69 9.2 1.9 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase Rossmann-like PF10727.9 AHV94098.1 - 0.58 10.0 3.5 4.7 7.1 0.8 2.4 2 0 0 2 2 2 0 Rossmann-like domain Pyr_redox_3 PF13738.6 AHV94098.1 - 1 8.5 2.3 1.4 8.1 2.3 1.1 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase TP_methylase PF00590.20 AHV94099.1 - 2.3e-27 96.3 3.8 2.3e-27 96.3 3.8 1.5 2 0 0 2 2 2 1 Tetrapyrrole (Corrin/Porphyrin) Methylases DUF3053 PF11254.8 AHV94100.1 - 3e-40 138.1 3.1 4.1e-40 137.7 3.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3053) PSK_trans_fac PF07704.11 AHV94100.1 - 0.2 12.4 8.4 7.7 7.4 0.0 3.5 3 1 0 3 3 3 0 Rv0623-like transcription factor RNB PF00773.19 AHV94101.1 - 7e-100 334.5 0.0 1.8e-99 333.2 0.0 1.6 2 0 0 2 2 2 1 RNB domain CSD2 PF17876.1 AHV94101.1 - 2.8e-29 101.1 2.6 1.9e-24 85.6 1.0 2.5 2 0 0 2 2 2 2 Cold shock domain OB_RNB PF08206.11 AHV94101.1 - 2.8e-25 87.8 5.8 1e-20 73.2 0.4 2.8 3 0 0 3 3 3 2 Ribonuclease B OB domain S1 PF00575.23 AHV94101.1 - 3.3e-11 43.4 1.2 2.5e-10 40.5 0.2 2.4 2 0 0 2 2 2 1 S1 RNA binding domain OB_Dis3 PF17849.1 AHV94101.1 - 0.00074 19.5 0.0 0.0019 18.2 0.0 1.6 1 0 0 1 1 1 1 Dis3-like cold-shock domain 2 (CSD2) RNase_II_C_S1 PF18614.1 AHV94101.1 - 0.00093 19.1 2.6 0.058 13.3 0.6 2.8 2 0 0 2 2 2 1 RNase II-type exonuclease C-terminal S1 domain Rrp44_S1 PF17215.3 AHV94101.1 - 0.11 12.4 0.1 0.23 11.4 0.1 1.5 1 0 0 1 1 1 0 S1 domain Usher PF00577.20 AHV94102.1 - 5.8e-150 500.8 1.2 8.2e-150 500.3 1.2 1.2 1 0 0 1 1 1 1 Outer membrane usher protein PapC_N PF13954.6 AHV94102.1 - 5e-34 117.4 0.0 7.9e-34 116.8 0.0 1.3 1 0 0 1 1 1 1 PapC N-terminal domain PapC_C PF13953.6 AHV94102.1 - 2.7e-12 46.3 0.6 1.3e-11 44.1 0.0 2.5 3 0 0 3 3 3 1 PapC C-terminal domain Aminotran_3 PF00202.21 AHV94103.1 - 8.5e-100 334.2 0.0 9.6e-100 334.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 AHV94103.1 - 0.021 14.0 0.0 0.12 11.5 0.0 1.9 2 0 0 2 2 2 0 Aminotransferase class I and II MoeA_N PF03453.17 AHV94104.1 - 2.4e-44 150.8 1.8 3.9e-44 150.2 1.8 1.3 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 AHV94104.1 - 2.6e-28 98.5 0.0 3.7e-28 98.0 0.0 1.2 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 AHV94104.1 - 4.5e-09 36.4 0.0 1.1e-08 35.2 0.0 1.7 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) EarP PF10093.9 AHV94105.1 - 1.1e-49 169.5 0.4 1.5e-49 169.1 0.4 1.1 1 0 0 1 1 1 1 Elongation-Factor P (EF-P) rhamnosyltransferase EarP Amidase_2 PF01510.25 AHV94106.1 - 2e-27 96.1 0.0 3.5e-27 95.4 0.0 1.4 1 0 0 1 1 1 1 N-acetylmuramoyl-L-alanine amidase PG_binding_1 PF01471.18 AHV94106.1 - 2.3e-10 40.5 0.0 4e-10 39.8 0.0 1.4 1 0 0 1 1 1 1 Putative peptidoglycan binding domain PG_binding_2 PF08823.11 AHV94106.1 - 0.099 13.0 0.0 0.22 11.9 0.0 1.5 1 0 0 1 1 1 0 Putative peptidoglycan binding domain MurJ PF03023.14 AHV94107.1 - 1.5e-07 30.4 1.0 1.9e-07 30.0 1.0 1.1 1 0 0 1 1 1 1 Lipid II flippase MurJ SURF1 PF02104.15 AHV94108.1 - 9e-31 107.5 2.1 1.1e-30 107.2 2.1 1.1 1 0 0 1 1 1 1 SURF1 family DUF4131 PF13567.6 AHV94108.1 - 0.071 12.7 8.0 4.3 6.9 0.2 3.1 2 1 0 2 2 2 0 Domain of unknown function (DUF4131) DUF4229 PF14012.6 AHV94108.1 - 0.077 13.1 0.8 0.077 13.1 0.8 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF4229) Tad PF13400.6 AHV94108.1 - 0.53 10.6 6.9 0.75 10.2 2.2 2.9 3 0 0 3 3 3 0 Putative Flp pilus-assembly TadE/G-like LapA_dom PF06305.11 AHV94108.1 - 2.6 7.9 6.1 8.9 6.2 0.4 2.4 2 0 0 2 2 2 0 Lipopolysaccharide assembly protein A domain rve PF00665.26 AHV94109.1 - 7.9e-14 51.9 0.0 3.1e-12 46.7 0.0 2.1 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 AHV94109.1 - 9.1e-12 44.9 8.6 1.8e-11 44.0 8.6 1.5 1 0 0 1 1 1 1 HTH-like domain Rhomboid_SP PF12595.8 AHV94109.1 - 0.0029 17.0 0.4 0.96 8.8 0.0 2.2 1 1 1 2 2 2 2 Rhomboid serine protease Exo_endo_phos PF03372.23 AHV94110.1 - 2.4e-14 53.4 1.2 3.5e-14 52.9 1.2 1.2 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Aminotran_4 PF01063.19 AHV94111.1 - 1.3e-14 54.6 0.0 1.6e-14 54.3 0.0 1.1 1 0 0 1 1 1 1 Amino-transferase class IV Glyco_trans_1_4 PF13692.6 AHV94111.1 - 0.018 15.5 0.0 0.024 15.1 0.0 1.2 1 0 0 1 1 1 0 Glycosyl transferases group 1 GST_N_3 PF13417.6 AHV94112.1 - 3.9e-18 65.6 0.0 7.3e-18 64.8 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.6 AHV94112.1 - 1.5e-13 50.8 0.0 2.3e-13 50.2 0.0 1.3 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N PF02798.20 AHV94112.1 - 7.5e-08 32.6 0.0 1.5e-07 31.6 0.0 1.6 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_C_2 PF13410.6 AHV94112.1 - 2.5e-07 30.6 0.2 5.8e-07 29.4 0.0 1.6 2 0 0 2 2 2 1 Glutathione S-transferase, C-terminal domain GST_C PF00043.25 AHV94112.1 - 0.00018 21.7 0.0 0.00025 21.2 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C_3 PF14497.6 AHV94112.1 - 0.029 14.6 0.0 0.046 13.9 0.0 1.3 1 0 0 1 1 1 0 Glutathione S-transferase, C-terminal domain GST_N_5 PF18485.1 AHV94112.1 - 0.16 12.3 0.0 0.25 11.7 0.0 1.3 1 0 0 1 1 1 0 Glutathione S-transferase, N-terminal domain SecD-TM1 PF13721.6 AHV94113.1 - 1.5e-13 51.1 0.9 1.7e-13 50.9 0.9 1.0 1 0 0 1 1 1 1 SecD export protein N-terminal TM region Phage_holin_2_1 PF04971.12 AHV94113.1 - 0.042 13.9 0.4 0.052 13.5 0.4 1.0 1 0 0 1 1 1 0 Bacteriophage P21 holin S LZ_Tnp_IS481 PF13011.6 AHV94114.1 - 2.3e-22 79.3 2.6 4.6e-20 71.9 0.4 2.3 1 1 1 2 2 2 1 leucine-zipper of insertion element IS481 HTH_23 PF13384.6 AHV94114.1 - 2.6e-17 62.1 4.4 6.1e-08 32.2 0.1 2.3 2 0 0 2 2 2 2 Homeodomain-like domain HTH_28 PF13518.6 AHV94114.1 - 1.3e-16 60.4 2.6 2.9e-11 43.3 0.1 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_29 PF13551.6 AHV94114.1 - 3.9e-12 46.0 0.6 1.3e-06 28.3 0.0 2.3 2 0 0 2 2 2 2 Winged helix-turn helix HTH_32 PF13565.6 AHV94114.1 - 2.3e-11 44.1 0.7 4.3e-11 43.3 0.7 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_38 PF13936.6 AHV94114.1 - 2.1e-06 27.4 1.8 4.5e-06 26.3 1.1 1.9 2 1 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 AHV94114.1 - 4.2e-06 26.5 3.4 5e-05 23.1 1.2 2.3 2 0 0 2 2 2 1 MarR family HTH_Tnp_ISL3 PF13542.6 AHV94114.1 - 5.9e-06 25.6 1.9 0.0011 18.4 0.6 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 Sigma70_r4_2 PF08281.12 AHV94114.1 - 1.2e-05 24.9 0.1 0.0035 17.0 0.3 2.3 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 AHV94114.1 - 2.3e-05 23.8 0.1 0.00031 20.2 0.2 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 YdaS_antitoxin PF15943.5 AHV94114.1 - 9.9e-05 22.1 0.3 0.13 12.1 0.0 2.6 2 0 0 2 2 2 2 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_24 PF13412.6 AHV94114.1 - 0.00012 21.5 0.2 0.0012 18.4 0.3 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_3 PF01381.22 AHV94114.1 - 0.00013 22.0 0.7 0.0076 16.3 0.3 2.4 2 0 0 2 2 2 1 Helix-turn-helix HTH_Crp_2 PF13545.6 AHV94114.1 - 0.0002 21.3 0.4 0.0015 18.5 0.2 2.2 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_31 PF13560.6 AHV94114.1 - 0.00027 21.2 6.9 0.0014 18.9 2.8 2.9 2 2 0 2 2 2 1 Helix-turn-helix domain Trp_repressor PF01371.19 AHV94114.1 - 0.00036 20.6 0.2 0.0033 17.5 0.1 2.0 2 0 0 2 2 2 1 Trp repressor protein LacI PF00356.21 AHV94114.1 - 0.00049 19.8 1.2 0.0027 17.5 0.7 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family CENP-B_N PF04218.13 AHV94114.1 - 0.00051 19.6 0.0 0.88 9.2 0.1 2.3 2 0 0 2 2 2 2 CENP-B N-terminal DNA-binding domain HTH_5 PF01022.20 AHV94114.1 - 0.00067 19.5 0.0 0.5 10.3 0.0 2.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.19 AHV94114.1 - 0.00069 19.8 0.0 0.018 15.2 0.0 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain SpoIIID PF12116.8 AHV94114.1 - 0.00094 19.2 0.0 0.54 10.4 0.0 2.2 2 0 0 2 2 2 1 Stage III sporulation protein D HTH_IclR PF09339.10 AHV94114.1 - 0.00099 18.9 1.6 0.019 14.7 0.7 2.5 2 0 0 2 2 2 1 IclR helix-turn-helix domain RepB PF07506.11 AHV94114.1 - 0.0011 19.1 0.2 0.21 11.6 0.1 2.3 1 1 1 2 2 2 1 RepB plasmid partitioning protein HTH_11 PF08279.12 AHV94114.1 - 0.0014 18.5 0.5 0.008 16.1 0.5 2.1 2 0 0 2 2 2 1 HTH domain HTH_psq PF05225.16 AHV94114.1 - 0.0016 18.1 0.5 1.3 8.8 0.5 2.3 2 0 0 2 2 2 1 helix-turn-helix, Psq domain GntR PF00392.21 AHV94114.1 - 0.0021 17.6 0.8 0.28 10.8 0.4 2.4 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_AsnC-type PF13404.6 AHV94114.1 - 0.0023 17.7 3.1 0.03 14.2 1.4 2.6 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_Tnp_1 PF01527.20 AHV94114.1 - 0.0025 18.1 0.4 0.052 13.9 0.0 2.2 1 1 1 2 2 2 1 Transposase HTH_17 PF12728.7 AHV94114.1 - 0.003 17.7 0.1 3.5 7.9 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_10 PF04967.12 AHV94114.1 - 0.0047 16.7 0.1 0.028 14.2 0.2 2.0 2 0 0 2 2 2 1 HTH DNA binding domain HTH_35 PF13693.6 AHV94114.1 - 0.0051 16.8 0.9 0.038 14.0 0.6 2.2 1 1 1 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_30 PF13556.6 AHV94114.1 - 0.0058 16.4 0.1 0.97 9.3 0.0 2.3 2 0 0 2 2 2 1 PucR C-terminal helix-turn-helix domain UPF0175 PF03683.13 AHV94114.1 - 0.0061 16.2 0.4 0.052 13.3 0.1 2.2 2 1 1 3 3 2 1 Uncharacterised protein family (UPF0175) HTH_37 PF13744.6 AHV94114.1 - 0.0076 16.2 0.1 0.065 13.2 0.1 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Tnp_4 PF13613.6 AHV94114.1 - 0.0098 15.6 0.1 0.038 13.7 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix of DDE superfamily endonuclease Crp PF00325.20 AHV94114.1 - 0.015 15.0 1.5 0.036 13.7 0.5 2.1 2 0 0 2 2 2 0 Bacterial regulatory proteins, crp family HTH_36 PF13730.6 AHV94114.1 - 0.016 15.1 0.0 0.32 11.0 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain MerR PF00376.23 AHV94114.1 - 0.017 14.9 1.3 1.9 8.3 0.0 2.8 3 0 0 3 3 2 0 MerR family regulatory protein MarR PF01047.22 AHV94114.1 - 0.02 14.8 0.1 0.08 12.9 0.1 2.0 2 0 0 2 2 2 0 MarR family P22_Cro PF14549.6 AHV94114.1 - 0.027 14.3 2.0 5.1 7.0 0.1 2.3 2 0 0 2 2 2 0 DNA-binding transcriptional regulator Cro DUF746 PF05344.11 AHV94114.1 - 0.036 13.9 0.1 0.54 10.1 0.0 2.2 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) HTH_1 PF00126.27 AHV94114.1 - 0.046 13.7 3.0 2.7 8.0 0.5 2.4 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_DeoR PF08220.12 AHV94114.1 - 0.054 13.3 0.1 5.6 6.8 0.0 2.2 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain Glyc_hyd_38C_2 PF18230.1 AHV94114.1 - 0.059 13.5 0.0 0.63 10.2 0.0 2.1 2 0 0 2 2 2 0 Glycosyl hydrolases family 38 C-terminal sub-domain HTH_Tnp_Tc3_2 PF01498.18 AHV94114.1 - 0.076 13.3 1.5 0.24 11.7 0.1 2.5 2 0 0 2 2 2 0 Transposase Sigma54_DBD PF04552.13 AHV94114.1 - 0.09 12.5 0.1 0.16 11.7 0.1 1.4 1 0 0 1 1 1 0 Sigma-54, DNA binding domain HTH_8 PF02954.19 AHV94114.1 - 0.098 12.5 0.9 8.2 6.3 0.8 2.3 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family TrmB PF01978.19 AHV94114.1 - 0.11 12.3 0.0 0.34 10.8 0.1 1.7 2 0 0 2 2 1 0 Sugar-specific transcriptional regulator TrmB HTH_7 PF02796.15 AHV94114.1 - 0.12 12.5 0.4 0.28 11.3 0.1 1.7 2 0 0 2 2 1 0 Helix-turn-helix domain of resolvase DUF1804 PF08822.11 AHV94114.1 - 0.13 12.2 0.2 10 6.1 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1804) HTH_26 PF13443.6 AHV94114.1 - 0.19 12.2 0.0 2 8.9 0.1 2.1 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain DUF977 PF06163.11 AHV94114.1 - 0.2 11.6 0.6 11 6.0 0.1 2.3 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF977) MerR_1 PF13411.6 AHV94114.1 - 0.23 11.6 0.9 1.4 9.1 0.0 2.3 3 0 0 3 3 2 0 MerR HTH family regulatory protein HSCB_C PF07743.13 AHV94115.1 - 3.7e-14 53.0 5.8 3.7e-14 53.0 5.8 2.0 2 1 0 2 2 2 1 HSCB C-terminal oligomerisation domain DnaJ PF00226.31 AHV94115.1 - 9.5e-05 22.5 0.0 0.00019 21.5 0.0 1.5 1 0 0 1 1 1 1 DnaJ domain Flg_hook PF02120.16 AHV94115.1 - 0.23 11.3 2.3 0.97 9.4 0.5 2.3 2 0 0 2 2 2 0 Flagellar hook-length control protein FliK IF-2 PF11987.8 AHV94116.1 - 3.7e-38 129.9 1.4 1.2e-37 128.2 1.4 2.0 1 0 0 1 1 1 1 Translation-initiation factor 2 GTP_EFTU PF00009.27 AHV94116.1 - 2.7e-35 121.7 1.1 2.7e-35 121.7 1.1 2.7 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain IF2_N PF04760.15 AHV94116.1 - 9.3e-26 89.4 3.8 4.3e-15 55.3 1.0 2.6 2 0 0 2 2 2 2 Translation initiation factor IF-2, N-terminal region IF2_assoc PF08364.11 AHV94116.1 - 7.7e-16 58.1 8.3 3.6e-15 55.9 8.3 2.3 1 0 0 1 1 1 1 Bacterial translation initiation factor IF-2 associated region MMR_HSR1 PF01926.23 AHV94116.1 - 3.2e-10 40.1 0.0 7.8e-10 38.8 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 AHV94116.1 - 3.7e-09 36.9 1.8 2.1e-05 24.8 0.1 3.3 3 0 0 3 3 2 2 Elongation factor Tu domain 2 Ras PF00071.22 AHV94116.1 - 2.9e-07 30.2 0.0 6.3e-07 29.1 0.0 1.6 1 0 0 1 1 1 1 Ras family FeoB_N PF02421.18 AHV94116.1 - 1.4e-05 24.6 0.0 4.6e-05 23.0 0.0 1.9 1 1 0 1 1 1 1 Ferrous iron transport protein B Arf PF00025.21 AHV94116.1 - 7.7e-05 22.2 0.0 0.00016 21.2 0.0 1.5 1 0 0 1 1 1 1 ADP-ribosylation factor family MeaB PF03308.16 AHV94116.1 - 0.00046 19.3 1.2 0.0057 15.7 0.1 2.3 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB SRPRB PF09439.10 AHV94116.1 - 0.0079 15.7 0.0 0.025 14.0 0.0 1.9 1 1 0 1 1 1 1 Signal recognition particle receptor beta subunit RsgA_GTPase PF03193.16 AHV94116.1 - 0.014 15.3 2.6 0.2 11.5 0.0 3.3 2 1 1 3 3 3 0 RsgA GTPase DDRGK PF09756.9 AHV94116.1 - 0.015 14.9 0.1 0.015 14.9 0.1 2.3 3 0 0 3 3 2 0 DDRGK domain Roc PF08477.13 AHV94116.1 - 0.023 14.9 0.0 0.053 13.7 0.0 1.6 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase Dynamin_N PF00350.23 AHV94116.1 - 0.049 13.7 0.0 7 6.7 0.0 2.8 1 1 1 2 2 2 0 Dynamin family QueC PF06508.13 AHV94117.1 - 3e-68 229.4 0.0 3.5e-68 229.3 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ThiI PF02568.14 AHV94117.1 - 0.012 15.2 0.0 0.099 12.2 0.0 2.1 2 0 0 2 2 2 0 Thiamine biosynthesis protein (ThiI) Arginosuc_synth PF00764.19 AHV94117.1 - 0.12 11.6 0.0 0.19 11.0 0.0 1.2 1 0 0 1 1 1 0 Arginosuccinate synthase Asn_synthase PF00733.21 AHV94117.1 - 0.15 11.7 0.0 0.21 11.2 0.0 1.1 1 0 0 1 1 1 0 Asparagine synthase Diphthami_syn_2 PF01902.17 AHV94117.1 - 0.22 11.0 0.0 0.32 10.5 0.0 1.2 1 0 0 1 1 1 0 Diphthamide synthase Internalin_N PF12354.8 AHV94118.1 - 0.011 15.8 0.0 0.013 15.5 0.0 1.2 1 0 0 1 1 1 0 Bacterial adhesion/invasion protein N terminal BPD_transp_1 PF00528.22 AHV94119.1 - 2e-10 40.7 16.1 2e-10 40.7 16.1 3.0 1 1 2 3 3 3 1 Binding-protein-dependent transport system inner membrane component Csa1 PF06023.12 AHV94119.1 - 0.17 11.2 0.1 0.26 10.6 0.1 1.3 1 0 0 1 1 1 0 CRISPR-associated exonuclease Csa1 GMC_oxred_N PF00732.19 AHV94120.1 - 3.1e-12 46.5 0.0 3.6e-12 46.3 0.0 1.0 1 0 0 1 1 1 1 GMC oxidoreductase FAD_binding_2 PF00890.24 AHV94120.1 - 7.3e-06 25.3 0.0 7.9e-06 25.2 0.0 1.1 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.6 AHV94120.1 - 7.1e-05 23.0 0.2 0.00012 22.3 0.2 1.3 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 AHV94120.1 - 0.0001 22.0 0.0 0.0001 22.0 0.0 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase Lycopene_cycl PF05834.12 AHV94120.1 - 0.0001 21.5 1.2 0.00014 21.0 1.2 1.4 1 1 0 1 1 1 1 Lycopene cyclase protein FAD_binding_3 PF01494.19 AHV94120.1 - 0.00035 19.9 0.1 0.00045 19.6 0.1 1.1 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 AHV94120.1 - 0.0007 18.9 0.0 0.0007 18.9 0.0 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 AHV94120.1 - 0.0019 17.0 0.2 0.0026 16.6 0.2 1.1 1 0 0 1 1 1 1 HI0933-like protein ApbA PF02558.16 AHV94120.1 - 0.032 13.9 0.2 0.048 13.3 0.2 1.2 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Thi4 PF01946.17 AHV94120.1 - 0.067 12.4 0.0 0.084 12.1 0.0 1.1 1 0 0 1 1 1 0 Thi4 family NTP_transferase PF00483.23 AHV94121.1 - 1.5e-22 80.4 0.0 1.7e-20 73.6 0.0 2.0 2 0 0 2 2 2 2 Nucleotidyl transferase NTP_transf_3 PF12804.7 AHV94121.1 - 9.7e-15 55.3 1.3 1.2e-14 55.0 1.3 1.3 1 1 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 AHV94121.1 - 0.0047 16.7 0.0 0.0068 16.2 0.0 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.19 AHV94121.1 - 0.13 12.1 0.0 0.19 11.6 0.0 1.1 1 0 0 1 1 1 0 Cytidylyltransferase PgpA PF04608.13 AHV94122.1 - 2.5e-48 163.7 8.7 2.9e-48 163.5 8.7 1.0 1 0 0 1 1 1 1 Phosphatidylglycerophosphatase A Na_H_Exchanger PF00999.21 AHV94123.1 - 4e-33 114.7 17.2 4.9e-33 114.5 17.2 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family PAP2 PF01569.21 AHV94123.1 - 0.16 11.8 3.6 0.13 12.0 1.8 1.8 2 0 0 2 2 2 0 PAP2 superfamily Phage_TAC_6 PF09550.10 AHV94123.1 - 1 9.9 4.3 0.8 10.2 0.5 2.6 2 1 0 2 2 2 0 Phage tail assembly chaperone protein, TAC C_GCAxxG_C_C PF09719.10 AHV94123.1 - 2.5 8.4 4.6 2.5 8.4 3.4 1.6 1 1 0 1 1 1 0 Putative redox-active protein (C_GCAxxG_C_C) Acyl_transf_3 PF01757.22 AHV94124.1 - 2.5e-24 86.0 31.3 3.2e-24 85.6 31.3 1.1 1 0 0 1 1 1 1 Acyltransferase family DUF2663 PF10864.8 AHV94124.1 - 0.86 10.0 5.8 4.2 7.8 0.2 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF2663) VIT1 PF01988.19 AHV94124.1 - 7 6.5 15.9 0.68 9.8 2.7 2.4 2 1 0 2 2 2 0 VIT family Methyltransf_30 PF05430.11 AHV94126.1 - 1e-33 115.9 0.0 1.5e-33 115.3 0.0 1.3 1 0 0 1 1 1 1 S-adenosyl-L-methionine-dependent methyltransferase DAO PF01266.24 AHV94126.1 - 4e-10 39.8 8.0 7.1e-10 39.0 8.0 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase 3HCDH_N PF02737.18 AHV94126.1 - 0.0085 16.0 0.5 0.012 15.5 0.5 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_2 PF00890.24 AHV94126.1 - 0.01 14.9 4.1 0.02 14.0 4.1 1.5 1 0 0 1 1 1 0 FAD binding domain Pyr_redox_2 PF07992.14 AHV94126.1 - 0.014 14.6 0.5 0.021 14.1 0.5 1.1 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 AHV94126.1 - 0.017 15.4 2.5 0.045 14.0 2.5 1.7 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 AHV94126.1 - 0.04 13.2 3.1 0.06 12.6 3.1 1.2 1 0 0 1 1 1 0 FAD binding domain Pyr_redox PF00070.27 AHV94126.1 - 0.67 10.6 1.6 1.2 9.8 1.6 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 AHV94126.1 - 0.85 8.6 7.0 1.2 8.2 7.0 1.1 1 0 0 1 1 1 0 Glucose inhibited division protein A Sigma70_r4_2 PF08281.12 AHV94127.1 - 6.3e-12 45.0 0.0 9.8e-12 44.4 0.0 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r2 PF04542.14 AHV94127.1 - 3.4e-10 39.6 0.1 7.3e-10 38.5 0.1 1.5 1 0 0 1 1 1 1 Sigma-70 region 2 HTH_23 PF13384.6 AHV94127.1 - 1.3e-05 24.8 0.8 3e-05 23.7 0.0 1.9 2 0 0 2 2 2 1 Homeodomain-like domain Sigma70_ECF PF07638.11 AHV94127.1 - 1.5e-05 24.9 0.0 2.5e-05 24.3 0.0 1.3 1 1 0 1 1 1 1 ECF sigma factor Sigma70_r4 PF04545.16 AHV94127.1 - 0.0047 16.4 0.0 0.0084 15.6 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_IclR PF09339.10 AHV94127.1 - 0.017 14.9 0.0 0.12 12.2 0.0 2.3 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_29 PF13551.6 AHV94127.1 - 0.02 14.9 0.4 0.041 13.9 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn helix HTH_24 PF13412.6 AHV94127.1 - 0.09 12.3 0.0 0.19 11.3 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 AHV94127.1 - 0.12 12.4 1.0 0.39 10.8 0.1 2.1 2 1 0 2 2 2 0 Helix-turn-helix domain PagP PF07017.11 AHV94128.1 - 7.1e-62 207.1 0.5 8.2e-62 206.9 0.5 1.0 1 0 0 1 1 1 1 Antimicrobial peptide resistance and lipid A acylation protein PagP MBOAT PF03062.19 AHV94129.1 - 3.6e-13 49.6 12.4 8.2e-13 48.4 12.4 1.6 1 1 0 1 1 1 1 MBOAT, membrane-bound O-acyltransferase family Abhydrolase_3 PF07859.13 AHV94130.1 - 6.7e-18 65.3 1.8 7.8e-17 61.8 1.8 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold COesterase PF00135.28 AHV94130.1 - 3.8e-14 52.5 0.0 2.8e-13 49.6 0.0 1.9 1 1 0 1 1 1 1 Carboxylesterase family Peptidase_S9 PF00326.21 AHV94130.1 - 0.0015 18.0 0.4 0.0042 16.6 0.4 1.7 1 1 0 1 1 1 1 Prolyl oligopeptidase family Say1_Mug180 PF10340.9 AHV94130.1 - 0.021 13.7 0.0 0.093 11.6 0.0 1.8 2 0 0 2 2 2 0 Steryl acetyl hydrolase rve_3 PF13683.6 AHV94131.1 - 1.8e-31 107.7 0.0 4.5e-31 106.4 0.0 1.7 2 0 0 2 2 2 1 Integrase core domain rve PF00665.26 AHV94131.1 - 2.7e-24 85.7 0.0 4.1e-24 85.1 0.0 1.3 1 0 0 1 1 1 1 Integrase core domain rve_2 PF13333.6 AHV94131.1 - 4.3e-07 30.0 0.0 7.5e-07 29.2 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AHV94131.1 - 0.00031 21.0 0.0 0.00062 20.0 0.0 1.5 1 1 1 2 2 2 1 DDE domain FtsX PF02687.21 AHV94132.1 - 1.7e-07 31.6 9.2 3.9e-07 30.4 0.7 3.1 3 0 0 3 3 3 2 FtsX-like permease family FtsX_ECD PF18075.1 AHV94132.1 - 3.5e-06 27.5 0.0 5.4e-06 26.9 0.0 1.3 1 0 0 1 1 1 1 FtsX extracellular domain DHBP_synthase PF00926.19 AHV94134.1 - 9.2e-80 266.7 0.1 1.2e-79 266.3 0.1 1.1 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase GTP_cyclohydro2 PF00925.20 AHV94134.1 - 1.3e-32 112.6 0.0 3.1e-32 111.4 0.0 1.6 2 0 0 2 2 2 1 GTP cyclohydrolase II ABC_membrane_3 PF13748.6 AHV94135.1 - 0.02 14.1 0.1 0.023 13.9 0.1 1.0 1 0 0 1 1 1 0 ABC transporter transmembrane region Acetyltransf_1 PF00583.25 AHV94136.1 - 6e-18 65.2 0.0 7.7e-18 64.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 AHV94136.1 - 2.5e-10 40.6 0.0 3.5e-10 40.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 AHV94136.1 - 6.6e-10 39.0 0.0 8.4e-10 38.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 AHV94136.1 - 2e-07 30.9 0.0 3e-07 30.3 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.7 AHV94136.1 - 5.3e-05 23.4 0.0 6.9e-05 23.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain PanZ PF12568.8 AHV94136.1 - 0.00056 19.6 0.0 0.00072 19.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_8 PF13523.6 AHV94136.1 - 0.0007 19.3 0.0 0.001 18.8 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 AHV94136.1 - 0.002 18.3 0.1 0.0028 17.8 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 AHV94136.1 - 0.14 12.2 0.0 1.2 9.3 0.0 2.0 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 AHV94136.1 - 0.17 12.6 0.1 0.43 11.3 0.1 1.6 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain T2SS-T3SS_pil_N PF13629.6 AHV94137.1 - 3.4e-19 68.4 0.5 3.4e-19 68.4 0.5 2.0 2 0 0 2 2 2 1 Pilus formation protein N terminal region Mur_ligase_M PF08245.12 AHV94138.1 - 1.7e-28 100.0 0.0 4.2e-26 92.1 0.0 2.1 2 0 0 2 2 2 2 Mur ligase middle domain Mur_ligase_C PF02875.21 AHV94138.1 - 7.8e-07 29.3 0.0 3.2e-06 27.3 0.0 2.1 1 0 0 1 1 1 1 Mur ligase family, glutamate ligase domain Cpn10 PF00166.21 AHV94139.1 - 5.1e-35 119.4 0.3 5.6e-35 119.3 0.3 1.0 1 0 0 1 1 1 1 Chaperonin 10 Kd subunit LysR_substrate PF03466.20 AHV94140.1 - 6.2e-30 104.1 5.2 8.8e-30 103.6 5.2 1.2 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 AHV94140.1 - 2e-18 66.1 0.1 6e-18 64.5 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_5 PF01022.20 AHV94140.1 - 0.00099 18.9 0.1 0.0041 17.0 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 AHV94140.1 - 0.0035 17.1 0.1 0.019 14.7 0.1 2.2 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_50 PF18024.1 AHV94140.1 - 0.011 15.3 0.1 0.021 14.4 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain P22_Cro PF14549.6 AHV94140.1 - 0.026 14.4 0.0 0.052 13.4 0.0 1.4 1 0 0 1 1 1 0 DNA-binding transcriptional regulator Cro HTH_23 PF13384.6 AHV94140.1 - 0.028 14.2 0.0 0.068 13.0 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain Fe_dep_repress PF01325.19 AHV94140.1 - 0.04 14.1 0.0 1.8 8.8 0.0 2.3 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_24 PF13412.6 AHV94140.1 - 0.042 13.4 0.0 0.25 10.9 0.0 2.3 2 1 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_28 PF13518.6 AHV94140.1 - 0.082 13.0 0.0 1.6 8.9 0.0 2.6 2 0 0 2 2 2 0 Helix-turn-helix domain CN_hydrolase PF00795.22 AHV94141.1 - 6.1e-33 114.3 0.0 6.8e-33 114.1 0.0 1.0 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase rve PF00665.26 AHV94142.1 - 2.9e-32 111.3 0.7 4.3e-32 110.8 0.1 1.6 2 0 0 2 2 1 1 Integrase core domain LZ_Tnp_IS481 PF13011.6 AHV94142.1 - 1.9e-21 76.3 2.6 1.1e-19 70.7 0.4 2.6 1 1 1 2 2 2 1 leucine-zipper of insertion element IS481 rve_3 PF13683.6 AHV94142.1 - 5.1e-19 67.8 2.7 1.2e-18 66.6 2.7 1.7 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.6 AHV94142.1 - 1.6e-16 59.6 4.2 1.2e-07 31.3 0.1 2.7 2 0 0 2 2 2 2 Homeodomain-like domain HTH_28 PF13518.6 AHV94142.1 - 5.9e-15 55.1 6.1 5.9e-11 42.3 0.1 3.4 4 0 0 4 4 3 2 Helix-turn-helix domain HTH_29 PF13551.6 AHV94142.1 - 1.8e-11 43.9 0.5 2.6e-06 27.4 0.0 2.6 2 0 0 2 2 2 2 Winged helix-turn helix HTH_32 PF13565.6 AHV94142.1 - 3.8e-10 40.2 0.7 3.8e-10 40.2 0.7 2.4 2 1 0 2 2 2 1 Homeodomain-like domain HTH_38 PF13936.6 AHV94142.1 - 5.4e-06 26.1 0.5 1.9e-05 24.3 0.4 2.1 2 0 0 2 2 1 1 Helix-turn-helix domain MarR_2 PF12802.7 AHV94142.1 - 3e-05 23.8 3.0 0.00037 20.3 1.1 2.6 2 0 0 2 2 2 1 MarR family HTH_31 PF13560.6 AHV94142.1 - 6.8e-05 23.1 1.5 0.0033 17.8 0.3 3.2 3 0 0 3 3 3 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 AHV94142.1 - 0.00013 21.4 0.1 0.0016 17.9 0.2 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 YdaS_antitoxin PF15943.5 AHV94142.1 - 0.0003 20.6 0.2 0.33 10.9 0.0 2.8 2 0 0 2 2 2 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT Sigma70_r4_2 PF08281.12 AHV94142.1 - 0.00043 19.9 0.1 0.092 12.4 0.2 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_Tnp_ISL3 PF13542.6 AHV94142.1 - 0.00057 19.3 8.6 0.0047 16.3 0.6 3.9 4 0 0 4 4 3 1 Helix-turn-helix domain of transposase family ISL3 HTH_24 PF13412.6 AHV94142.1 - 0.00062 19.3 0.2 0.0045 16.5 0.3 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_3 PF01381.22 AHV94142.1 - 0.00094 19.2 0.6 0.041 14.0 0.2 2.5 2 0 0 2 2 2 1 Helix-turn-helix LacI PF00356.21 AHV94142.1 - 0.0015 18.3 1.6 0.0044 16.8 0.6 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family Trp_repressor PF01371.19 AHV94142.1 - 0.0016 18.5 0.2 0.012 15.7 0.1 2.2 2 0 0 2 2 2 1 Trp repressor protein HTH_Crp_2 PF13545.6 AHV94142.1 - 0.002 18.1 0.3 0.013 15.4 0.1 2.3 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain SpoIIID PF12116.8 AHV94142.1 - 0.003 17.6 0.0 1.1 9.4 0.0 2.4 2 0 0 2 2 2 1 Stage III sporulation protein D HTH_Tnp_1 PF01527.20 AHV94142.1 - 0.0042 17.4 0.4 0.11 12.8 0.0 2.7 1 1 1 2 2 2 1 Transposase CENP-B_N PF04218.13 AHV94142.1 - 0.0046 16.6 0.0 3.7 7.2 0.0 2.3 2 0 0 2 2 2 1 CENP-B N-terminal DNA-binding domain Fe_dep_repress PF01325.19 AHV94142.1 - 0.0051 17.0 0.0 0.086 13.1 0.1 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.20 AHV94142.1 - 0.0056 16.5 0.0 2.2 8.2 0.0 2.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 AHV94142.1 - 0.0079 16.0 0.9 0.12 12.1 0.4 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_17 PF12728.7 AHV94142.1 - 0.0082 16.3 0.6 6.1 7.1 0.0 3.3 3 1 0 3 3 3 0 Helix-turn-helix domain HTH_AsnC-type PF13404.6 AHV94142.1 - 0.0095 15.7 2.3 0.13 12.1 0.9 2.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain GntR PF00392.21 AHV94142.1 - 0.013 15.1 0.8 1.2 8.8 0.3 2.6 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_psq PF05225.16 AHV94142.1 - 0.017 14.8 0.5 8.2 6.3 0.0 2.9 3 0 0 3 3 3 0 helix-turn-helix, Psq domain HTH_11 PF08279.12 AHV94142.1 - 0.026 14.5 0.5 0.15 12.0 0.5 2.2 2 0 0 2 2 2 0 HTH domain HTH_10 PF04967.12 AHV94142.1 - 0.027 14.2 0.0 0.17 11.7 0.1 2.2 2 0 0 2 2 2 0 HTH DNA binding domain RepB PF07506.11 AHV94142.1 - 0.03 14.4 0.1 3.7 7.6 0.1 2.3 1 1 1 2 2 2 0 RepB plasmid partitioning protein HTH_Tnp_4 PF13613.6 AHV94142.1 - 0.032 13.9 0.1 0.13 12.0 0.1 2.0 2 0 0 2 2 1 0 Helix-turn-helix of DDE superfamily endonuclease HTH_35 PF13693.6 AHV94142.1 - 0.034 14.2 1.2 0.3 11.2 0.4 2.7 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding HTH_30 PF13556.6 AHV94142.1 - 0.034 14.0 0.0 2 8.3 0.0 2.6 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain DDE_Tnp_IS240 PF13610.6 AHV94142.1 - 0.048 13.9 0.1 0.071 13.3 0.1 1.3 1 0 0 1 1 1 0 DDE domain P22_Cro PF14549.6 AHV94142.1 - 0.062 13.2 1.5 9.6 6.1 0.1 2.5 2 0 0 2 2 2 0 DNA-binding transcriptional regulator Cro HTH_37 PF13744.6 AHV94142.1 - 0.068 13.1 0.1 0.55 10.2 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain UPF0175 PF03683.13 AHV94142.1 - 0.073 12.8 0.3 0.56 10.0 0.1 2.4 2 1 0 2 2 2 0 Uncharacterised protein family (UPF0175) HTH_1 PF00126.27 AHV94142.1 - 0.098 12.6 1.9 7.3 6.6 0.2 2.6 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family Crp PF00325.20 AHV94142.1 - 0.11 12.2 2.8 0.16 11.6 0.4 2.6 3 0 0 3 3 3 0 Bacterial regulatory proteins, crp family DUF746 PF05344.11 AHV94142.1 - 0.11 12.3 0.1 0.98 9.3 0.0 2.3 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) MarR PF01047.22 AHV94142.1 - 0.11 12.4 0.1 0.36 10.8 0.1 1.8 2 0 0 2 2 1 0 MarR family KORA PF16509.5 AHV94142.1 - 0.14 12.5 0.1 14 6.0 0.0 3.0 3 0 0 3 3 3 0 TrfB plasmid transcriptional repressor HTH_36 PF13730.6 AHV94142.1 - 0.17 11.8 0.0 5.2 7.1 0.0 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_Tnp_Tc3_2 PF01498.18 AHV94142.1 - 0.38 11.0 2.7 0.63 10.3 0.1 2.6 3 0 0 3 3 1 0 Transposase MerR PF00376.23 AHV94142.1 - 0.77 9.6 6.8 3.2 7.6 0.0 3.6 4 0 0 4 4 2 0 MerR family regulatory protein GDP_Man_Dehyd PF16363.5 AHV94143.1 - 4e-86 289.4 0.0 4.5e-86 289.3 0.0 1.0 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 AHV94143.1 - 1.2e-67 227.9 0.0 1.5e-67 227.6 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 AHV94143.1 - 2.6e-13 49.7 0.0 3.5e-13 49.3 0.0 1.3 1 1 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 AHV94143.1 - 5.8e-13 48.6 0.0 9.1e-13 48.0 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.19 AHV94143.1 - 4.7e-10 38.9 0.0 1.7e-09 37.1 0.0 1.8 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.12 AHV94143.1 - 1.4e-09 37.5 0.0 0.00011 21.5 0.0 2.4 2 1 0 2 2 2 2 Male sterility protein adh_short PF00106.25 AHV94143.1 - 9.4e-05 21.9 0.1 0.28 10.6 0.0 2.3 2 0 0 2 2 2 2 short chain dehydrogenase KR PF08659.10 AHV94143.1 - 0.0042 17.0 0.3 0.013 15.5 0.0 1.8 2 0 0 2 2 2 1 KR domain Sacchrp_dh_NADP PF03435.18 AHV94143.1 - 0.0079 16.5 0.0 0.012 15.9 0.0 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain YAcAr PF10686.9 AHV94143.1 - 0.048 13.6 2.7 2.9 7.9 0.1 3.4 3 0 0 3 3 3 0 YspA, cpYpsA-related SLOG family POR PF01558.18 AHV94144.1 - 2.1e-22 80.0 0.1 4.2e-22 79.1 0.1 1.5 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Fer4_10 PF13237.6 AHV94144.1 - 2.4 8.4 6.9 63 3.8 8.5 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain G3P_acyltransf PF02660.15 AHV94145.1 - 5.6e-50 169.6 15.4 6.5e-50 169.4 15.4 1.0 1 0 0 1 1 1 1 Glycerol-3-phosphate acyltransferase DUF2070 PF09843.9 AHV94145.1 - 8.4 4.5 11.7 10 4.3 11.7 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) SBP_bac_3 PF00497.20 AHV94146.1 - 1.3e-32 113.1 0.0 1.7e-32 112.7 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 NMT1 PF09084.11 AHV94146.1 - 1e-06 28.8 0.1 1.5e-05 25.1 0.0 2.1 1 1 1 2 2 2 2 NMT1/THI5 like OpuAC PF04069.12 AHV94146.1 - 0.0014 18.3 0.0 0.0035 17.0 0.0 1.7 1 1 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system SBP_bac_5 PF00496.22 AHV94146.1 - 0.042 12.8 0.1 0.14 11.1 0.0 1.7 2 0 0 2 2 2 0 Bacterial extracellular solute-binding proteins, family 5 Middle Phosphonate-bd PF12974.7 AHV94146.1 - 0.11 12.0 0.0 6 6.4 0.0 2.3 1 1 1 2 2 2 0 ABC transporter, phosphonate, periplasmic substrate-binding protein Phage_Nu1 PF07471.12 AHV94146.1 - 0.16 11.7 0.0 0.33 10.7 0.0 1.5 1 0 0 1 1 1 0 Phage DNA packaging protein Nu1 UPF0126 PF03458.13 AHV94146.1 - 0.31 11.0 2.5 0.69 9.8 2.5 1.6 1 0 0 1 1 1 0 UPF0126 domain Complex1_51K PF01512.17 AHV94147.1 - 1.7e-45 154.6 0.0 2.4e-45 154.1 0.0 1.2 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit NADH_4Fe-4S PF10589.9 AHV94147.1 - 1.6e-30 105.0 0.0 2.7e-30 104.3 0.0 1.4 1 0 0 1 1 1 1 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region SLBB PF10531.9 AHV94147.1 - 5.5e-14 51.8 0.2 1.3e-13 50.6 0.2 1.7 1 0 0 1 1 1 1 SLBB domain CoA_trans PF01144.23 AHV94148.1 - 6.5e-37 127.0 0.0 7.4e-37 126.8 0.0 1.0 1 0 0 1 1 1 1 Coenzyme A transferase FG-GAP PF01839.23 AHV94148.1 - 0.095 12.9 0.4 3.6 7.8 0.3 2.5 2 0 0 2 2 2 0 FG-GAP repeat FlaG PF03646.15 AHV94149.1 - 2.8e-17 62.8 0.0 3.2e-17 62.6 0.0 1.1 1 0 0 1 1 1 1 FlaG protein rve_3 PF13683.6 AHV94150.1 - 8.3e-32 108.8 0.1 4.5e-31 106.4 0.0 2.2 2 0 0 2 2 2 1 Integrase core domain rve PF00665.26 AHV94150.1 - 4.2e-25 88.2 0.0 1.1e-23 83.7 0.0 2.2 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 AHV94150.1 - 1.8e-11 44.0 8.6 3.6e-11 43.0 8.6 1.5 1 0 0 1 1 1 1 HTH-like domain rve_2 PF13333.6 AHV94150.1 - 5.8e-07 29.6 0.0 1.3e-06 28.5 0.0 1.6 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AHV94150.1 - 0.00041 20.6 0.0 0.00091 19.5 0.0 1.6 1 1 1 2 2 2 1 DDE domain Rhomboid_SP PF12595.8 AHV94150.1 - 0.0081 15.6 0.3 2.2 7.6 0.0 2.3 1 1 0 2 2 2 2 Rhomboid serine protease DUF1780 PF08682.10 AHV94150.1 - 0.13 11.9 1.0 1.6 8.3 0.3 2.2 2 0 0 2 2 2 0 Putative endonuclease, protein of unknown function (DUF1780) ATP-synt_DE_N PF02823.16 AHV94151.1 - 3.8e-29 100.4 0.3 5.5e-29 99.9 0.3 1.2 1 0 0 1 1 1 1 ATP synthase, Delta/Epsilon chain, beta-sandwich domain ATP-synt_DE PF00401.20 AHV94151.1 - 0.0044 17.3 18.0 0.0044 17.3 18.0 2.1 2 1 1 3 3 3 1 ATP synthase, Delta/Epsilon chain, long alpha-helix domain Ferritin PF00210.24 AHV94152.1 - 2.6e-27 95.5 1.3 3.2e-27 95.2 1.3 1.1 1 0 0 1 1 1 1 Ferritin-like domain DUF4129 PF13559.6 AHV94152.1 - 3.1 8.1 7.0 1.3 9.4 0.9 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF4129) TonB_dep_Rec PF00593.24 AHV94153.1 - 8.4e-29 101.7 11.0 1e-28 101.5 11.0 1.0 1 0 0 1 1 1 1 TonB dependent receptor OMP_b-brl PF13505.6 AHV94153.1 - 0.0071 16.5 0.9 0.015 15.4 0.9 1.6 1 1 0 1 1 1 1 Outer membrane protein beta-barrel domain Glu-tRNAGln PF02686.15 AHV94154.1 - 1e-20 73.8 0.1 1.3e-20 73.4 0.1 1.2 1 0 0 1 1 1 1 Glu-tRNAGln amidotransferase C subunit MFS_1 PF07690.16 AHV94155.1 - 1.4e-47 162.3 56.2 1.6e-47 162.2 51.8 2.5 1 1 0 1 1 1 1 Major Facilitator Superfamily TRI12 PF06609.13 AHV94155.1 - 1.2e-09 37.2 16.8 4.1e-09 35.4 16.8 1.8 1 1 0 1 1 1 1 Fungal trichothecene efflux pump (TRI12) Sugar_tr PF00083.24 AHV94155.1 - 5.2e-05 22.3 16.9 5.2e-05 22.3 16.9 3.3 2 1 1 3 3 3 2 Sugar (and other) transporter Plug PF07715.15 AHV94156.1 - 3.1e-13 50.2 0.0 5.8e-13 49.4 0.0 1.4 1 0 0 1 1 1 1 TonB-dependent Receptor Plug Domain Lbh PF15317.6 AHV94156.1 - 0.11 13.4 0.0 0.19 12.6 0.0 1.3 1 0 0 1 1 1 0 Cardiac transcription factor regulator, Developmental protein Usp PF00582.26 AHV94157.1 - 4e-30 105.2 0.3 4.4e-30 105.0 0.3 1.0 1 0 0 1 1 1 1 Universal stress protein family DDE_Tnp_ISL3 PF01610.17 AHV94158.1 - 2e-42 145.6 1.0 4e-42 144.6 0.2 1.7 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV94158.1 - 1.2e-11 43.9 0.1 2.7e-11 42.7 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV94158.1 - 4.1e-09 37.0 11.2 8.6e-09 35.9 11.2 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV94158.1 - 0.004 17.2 0.2 0.012 15.6 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain NOB1_Zn_bind PF08772.11 AHV94158.1 - 0.012 15.8 0.2 0.96 9.7 0.0 2.4 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-IS66 PF13005.7 AHV94158.1 - 0.94 9.9 6.6 2.7 8.4 6.6 1.8 1 0 0 1 1 1 0 zinc-finger binding domain of transposase IS66 ZapB PF06005.12 AHV94159.1 - 8.8e-05 22.9 20.2 7.3 7.1 20.2 2.9 1 1 0 1 1 1 0 Cell division protein ZapB MAD PF05557.13 AHV94159.1 - 0.0016 16.9 14.0 0.0064 14.9 13.6 1.8 1 1 0 1 1 1 1 Mitotic checkpoint protein Spc7 PF08317.11 AHV94159.1 - 0.0061 15.5 12.9 0.0069 15.3 12.9 1.0 1 0 0 1 1 1 1 Spc7 kinetochore protein Lebercilin PF15619.6 AHV94159.1 - 0.019 14.6 14.9 0.026 14.2 14.9 1.1 1 0 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease PKcGMP_CC PF16808.5 AHV94159.1 - 0.024 14.5 7.8 0.25 11.2 0.2 3.2 2 2 1 3 3 3 0 Coiled-coil N-terminus of cGMP-dependent protein kinase Filament PF00038.21 AHV94159.1 - 0.042 13.4 12.0 0.052 13.1 12.0 1.2 1 0 0 1 1 1 0 Intermediate filament protein JIP_LZII PF16471.5 AHV94159.1 - 0.042 14.0 0.6 0.042 14.0 0.6 2.5 3 0 0 3 3 2 0 JNK-interacting protein leucine zipper II YabA PF06156.13 AHV94159.1 - 0.049 14.3 5.2 0.064 13.9 0.7 2.4 1 1 1 2 2 2 0 Initiation control protein YabA Phage_GP20 PF06810.11 AHV94159.1 - 0.06 13.2 4.9 0.4 10.5 4.2 2.1 1 1 1 2 2 2 0 Phage minor structural protein GP20 Csm1_N PF18504.1 AHV94159.1 - 0.089 13.1 10.1 0.26 11.6 0.8 3.3 1 1 2 3 3 3 0 Csm1 N-terminal domain Leu_zip PF15294.6 AHV94159.1 - 0.1 12.1 6.4 0.11 12.0 6.4 1.1 1 0 0 1 1 1 0 Leucine zipper Golgin_A5 PF09787.9 AHV94159.1 - 0.1 12.0 11.5 0.13 11.7 11.5 1.2 1 0 0 1 1 1 0 Golgin subfamily A member 5 Fez1 PF06818.15 AHV94159.1 - 0.1 13.0 13.0 0.13 12.7 13.0 1.1 1 0 0 1 1 1 0 Fez1 Seryl_tRNA_N PF02403.22 AHV94159.1 - 0.11 12.7 8.7 0.097 12.9 4.9 2.2 1 1 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain AAA_13 PF13166.6 AHV94159.1 - 0.13 10.9 2.8 0.16 10.6 2.8 1.2 1 0 0 1 1 1 0 AAA domain FapA PF03961.13 AHV94159.1 - 0.42 9.2 3.3 0.42 9.1 2.7 1.3 1 1 0 1 1 1 0 Flagellar Assembly Protein A ABC_tran_CTD PF16326.5 AHV94159.1 - 0.47 10.7 16.1 2.3 8.5 0.9 3.2 2 1 1 3 3 3 0 ABC transporter C-terminal domain ADIP PF11559.8 AHV94159.1 - 0.67 10.0 15.2 6.3 6.9 15.2 2.0 1 1 0 1 1 1 0 Afadin- and alpha -actinin-Binding DUF641 PF04859.12 AHV94159.1 - 0.72 10.2 10.6 0.68 10.3 1.6 2.4 1 1 1 2 2 2 0 Plant protein of unknown function (DUF641) ATG16 PF08614.11 AHV94159.1 - 1.1 9.5 20.5 0.12 12.6 12.4 2.1 1 1 0 2 2 2 0 Autophagy protein 16 (ATG16) APG6_N PF17675.1 AHV94159.1 - 1.2 9.7 20.1 1.9 9.0 18.4 1.9 1 1 0 1 1 1 0 Apg6 coiled-coil region TMF_DNA_bd PF12329.8 AHV94159.1 - 1.2 9.1 8.2 5.6 7.0 0.1 2.8 1 1 2 3 3 3 0 TATA element modulatory factor 1 DNA binding V_ATPase_I PF01496.19 AHV94159.1 - 1.7 6.5 3.4 1.8 6.4 2.5 1.3 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family Fzo_mitofusin PF04799.13 AHV94159.1 - 2.1 7.9 6.9 1.1 8.8 2.5 2.0 1 1 1 2 2 2 0 fzo-like conserved region Exonuc_VII_L PF02601.15 AHV94159.1 - 2.2 7.8 10.0 2.7 7.5 10.0 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit DUF724 PF05266.14 AHV94159.1 - 3.3 7.5 9.7 43 3.9 9.7 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF724) Troponin PF00992.20 AHV94159.1 - 3.8 7.8 14.8 0.58 10.5 1.9 2.5 1 1 0 2 2 2 0 Troponin DUF4407 PF14362.6 AHV94159.1 - 4.1 6.7 18.1 6.2 6.1 18.1 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) DUF4200 PF13863.6 AHV94159.1 - 5 7.6 14.3 51 4.3 13.7 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4200) Atg14 PF10186.9 AHV94159.1 - 5.4 6.0 13.2 8.5 5.4 13.2 1.3 1 1 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 PRKG1_interact PF15898.5 AHV94159.1 - 6 7.8 12.4 8.1 7.4 2.0 2.2 1 1 1 2 2 2 0 cGMP-dependent protein kinase interacting domain Jnk-SapK_ap_N PF09744.9 AHV94159.1 - 6.1 7.0 15.0 2.8 8.1 3.2 2.1 1 1 1 2 2 2 0 JNK_SAPK-associated protein-1 ERM PF00769.19 AHV94159.1 - 7.4 6.3 25.0 58 3.4 25.1 1.9 1 1 0 1 1 1 0 Ezrin/radixin/moesin family CENP-H PF05837.12 AHV94159.1 - 8.5 6.8 16.6 1.5e+02 2.8 16.6 2.0 1 1 0 1 1 1 0 Centromere protein H (CENP-H) MerR_1 PF13411.6 AHV94160.1 - 3.3e-14 52.7 1.3 4.7e-14 52.2 1.3 1.2 1 0 0 1 1 1 1 MerR HTH family regulatory protein MerR PF00376.23 AHV94160.1 - 0.0013 18.4 1.1 0.0027 17.5 1.1 1.5 1 0 0 1 1 1 1 MerR family regulatory protein Peptidase_M24 PF00557.24 AHV94161.1 - 3.1e-50 170.8 0.0 3.7e-50 170.5 0.0 1.0 1 0 0 1 1 1 1 Metallopeptidase family M24 LysE PF01810.18 AHV94162.1 - 3.2e-12 46.3 9.1 3.8e-12 46.1 9.1 1.0 1 0 0 1 1 1 1 LysE type translocator URO-D PF01208.17 AHV94163.1 - 1.5e-130 435.4 0.0 1.7e-130 435.2 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) Radical_SAM PF04055.21 AHV94164.1 - 1.5e-12 48.2 0.1 2.8e-12 47.3 0.0 1.5 2 0 0 2 2 2 1 Radical SAM superfamily LIAS_N PF16881.5 AHV94164.1 - 2.2e-08 34.4 0.0 4e-08 33.6 0.0 1.4 1 0 0 1 1 1 1 N-terminal domain of lipoyl synthase of Radical_SAM family Semialdhyde_dhC PF02774.18 AHV94165.1 - 2.2e-56 190.9 0.0 2.8e-56 190.5 0.0 1.1 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain Semialdhyde_dh PF01118.24 AHV94165.1 - 7.5e-17 61.9 0.0 1.6e-16 60.8 0.0 1.6 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain FA_hydroxylase PF04116.13 AHV94166.1 - 2.5e-32 112.0 5.6 2.5e-32 112.0 5.6 2.2 2 1 0 2 2 2 1 Fatty acid hydroxylase superfamily UPF0054 PF02130.17 AHV94167.1 - 2e-29 102.0 0.0 2.3e-29 101.8 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein family UPF0054 DAHP_synth_1 PF00793.20 AHV94168.1 - 5.6e-105 350.1 0.0 6.8e-105 349.9 0.0 1.1 1 0 0 1 1 1 1 DAHP synthetase I family MUG113 PF13455.6 AHV94168.1 - 0.11 13.2 0.0 1.6 9.5 0.0 2.4 1 1 0 1 1 1 0 Meiotically up-regulated gene 113 ATP-synt_I PF03899.15 AHV94169.1 - 8.8e-08 32.4 4.0 1.2e-07 32.0 4.0 1.2 1 0 0 1 1 1 1 ATP synthase I chain PTS_EIIC PF02378.18 AHV94169.1 - 0.037 13.0 3.2 0.044 12.8 3.2 1.0 1 0 0 1 1 1 0 Phosphotransferase system, EIIC CPBP PF02517.16 AHV94169.1 - 0.12 12.8 6.3 0.16 12.3 6.3 1.4 1 1 0 1 1 1 0 CPBP intramembrane metalloprotease Wzy_C PF04932.15 AHV94169.1 - 0.81 9.3 5.5 1.1 8.8 5.5 1.2 1 0 0 1 1 1 0 O-Antigen ligase 2TM PF13239.6 AHV94169.1 - 0.86 10.0 10.0 1 9.7 10.0 1.4 1 1 0 1 1 1 0 2TM domain PhoR PF11808.8 AHV94169.1 - 4.4 7.8 13.6 0.27 11.6 6.7 2.1 1 1 1 2 2 2 0 Phosphate regulon sensor protein PhoR Pterin_bind PF00809.22 AHV94170.1 - 2.1e-82 276.5 0.0 2.4e-82 276.3 0.0 1.0 1 0 0 1 1 1 1 Pterin binding enzyme TctB PF07331.11 AHV94171.1 - 7.8e-21 74.8 11.3 9.4e-21 74.5 11.3 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctB family FUSC-like PF12805.7 AHV94171.1 - 0.013 14.6 1.9 0.032 13.3 1.9 1.6 1 1 0 1 1 1 0 FUSC-like inner membrane protein yccS DUF5516 PF17637.2 AHV94171.1 - 0.032 14.0 0.1 0.032 14.0 0.1 2.3 3 0 0 3 3 3 0 Family of unknown function (DUF5516) DUF202 PF02656.15 AHV94171.1 - 0.18 12.3 14.5 4.6 7.8 4.9 3.2 2 1 1 3 3 3 0 Domain of unknown function (DUF202) Wzy_C PF04932.15 AHV94171.1 - 0.23 11.1 3.6 1 9.0 3.5 2.2 1 1 0 1 1 1 0 O-Antigen ligase Antimicrobial10 PF08105.11 AHV94171.1 - 0.41 10.7 2.2 0.47 10.6 0.1 2.2 2 1 1 3 3 3 0 Metchnikowin family UPF0444 PF15475.6 AHV94171.1 - 1.3 9.3 3.3 3.7 7.9 0.3 2.4 2 1 0 2 2 2 0 Transmembrane protein C12orf23, UPF0444 SBP_bac_3 PF00497.20 AHV94172.1 - 4.3e-63 212.7 1.8 4.9e-63 212.6 1.8 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Lig_chan-Glu_bd PF10613.9 AHV94172.1 - 4.9e-11 42.8 0.0 9.3e-11 41.9 0.0 1.4 1 0 0 1 1 1 1 Ligated ion channel L-glutamate- and glycine-binding site NMT1 PF09084.11 AHV94172.1 - 0.0001 22.4 2.3 0.02 14.8 0.1 3.0 1 1 2 3 3 3 1 NMT1/THI5 like Phosphonate-bd PF12974.7 AHV94172.1 - 0.0001 22.0 0.6 0.0026 17.4 0.6 2.6 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein PBP_like PF12727.7 AHV94172.1 - 0.0034 16.5 0.1 0.35 10.0 0.1 2.2 1 1 0 1 1 1 1 PBP superfamily domain AAT PF03417.16 AHV94173.1 - 4.1e-46 157.5 0.0 4.8e-46 157.3 0.0 1.0 1 0 0 1 1 1 1 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase Antimicrobial12 PF08107.11 AHV94173.1 - 0.074 12.8 0.2 0.14 11.9 0.2 1.4 1 0 0 1 1 1 0 Pleurocidin family YcxB PF14317.6 AHV94174.1 - 8.9e-13 47.7 0.0 1.2e-12 47.3 0.0 1.2 1 0 0 1 1 1 1 YcxB-like protein CcmD PF04995.14 AHV94174.1 - 0.071 13.2 1.1 0.15 12.1 1.1 1.5 1 0 0 1 1 1 0 Heme exporter protein D (CcmD) CMD PF02627.20 AHV94175.1 - 4e-22 78.1 0.0 6.1e-22 77.5 0.0 1.2 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family TFX_C PF14601.6 AHV94175.1 - 0.06 13.3 0.0 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 DNA_binding protein, TFX, C-term BON PF04972.17 AHV94176.1 - 1.4e-29 102.2 5.9 1.1e-14 54.5 1.0 2.3 2 0 0 2 2 2 2 BON domain rve_3 PF13683.6 AHV94177.1 - 4e-26 90.6 0.1 4.7e-26 90.3 0.1 1.1 1 0 0 1 1 1 1 Integrase core domain rve_2 PF13333.6 AHV94177.1 - 5.8e-08 32.8 0.0 7.4e-08 32.5 0.0 1.1 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AHV94177.1 - 0.003 17.8 0.0 0.0035 17.6 0.0 1.1 1 0 0 1 1 1 1 DDE domain DDE_Tnp_ISL3 PF01610.17 AHV94179.1 - 7.3e-65 219.0 1.3 1.1e-64 218.4 0.3 1.7 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV94179.1 - 1.4e-11 43.6 0.1 3.6e-11 42.3 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV94179.1 - 5.4e-09 36.6 11.2 1.1e-08 35.6 11.2 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV94179.1 - 0.0056 16.7 0.2 0.016 15.3 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain SLT_L PF14718.6 AHV94179.1 - 0.016 15.3 1.5 0.016 15.3 1.5 1.8 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain HTH_Tnp_1 PF01527.20 AHV94180.1 - 1.8e-20 73.0 0.0 2e-20 72.9 0.0 1.0 1 0 0 1 1 1 1 Transposase HTH_23 PF13384.6 AHV94180.1 - 9.8e-07 28.4 0.0 1.6e-06 27.7 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.6 AHV94180.1 - 1.1e-06 28.6 0.0 1.6e-06 28.2 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_1_2 PF13022.6 AHV94180.1 - 7.6e-05 22.9 0.2 0.00065 19.8 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix of insertion element transposase HTH_29 PF13551.6 AHV94180.1 - 0.00016 21.6 0.0 0.00032 20.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix HTH_24 PF13412.6 AHV94180.1 - 0.00036 20.0 0.5 0.0024 17.4 0.0 2.1 2 1 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_7 PF02796.15 AHV94180.1 - 0.00039 20.4 0.1 0.00082 19.4 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain of resolvase MarR_2 PF12802.7 AHV94180.1 - 0.0045 16.8 0.0 0.0079 16.1 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 AHV94180.1 - 0.0057 16.4 0.0 0.0085 15.9 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_17 PF12728.7 AHV94180.1 - 0.0071 16.5 0.0 0.012 15.8 0.0 1.5 1 1 0 1 1 1 1 Helix-turn-helix domain Terminase_5 PF06056.12 AHV94180.1 - 0.0085 16.0 0.0 0.012 15.5 0.0 1.2 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_26 PF13443.6 AHV94180.1 - 0.01 16.3 0.0 0.023 15.1 0.0 1.7 1 1 1 2 2 2 0 Cro/C1-type HTH DNA-binding domain CENP-B_N PF04218.13 AHV94180.1 - 0.034 13.8 0.0 0.049 13.3 0.0 1.3 1 0 0 1 1 1 0 CENP-B N-terminal DNA-binding domain HTH_22 PF13309.6 AHV94180.1 - 0.067 13.3 0.0 0.2 11.8 0.0 1.7 1 0 0 1 1 1 0 HTH domain TetR_N PF00440.23 AHV94180.1 - 0.12 12.1 0.0 0.19 11.5 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family DoxX PF07681.12 AHV94181.1 - 6.9e-18 65.0 13.9 6.9e-18 65.0 13.9 1.7 2 0 0 2 2 2 1 DoxX DoxD PF04173.13 AHV94181.1 - 0.088 12.7 6.8 0.045 13.6 3.9 1.9 1 1 1 2 2 2 0 TQO small subunit DoxD rve PF00665.26 AHV94182.1 - 5.2e-19 68.6 0.0 5.9e-19 68.4 0.0 1.0 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.6 AHV94182.1 - 5.1e-15 55.0 0.0 1.6e-14 53.4 0.0 1.8 2 0 0 2 2 2 1 Integrase core domain PmbA_TldD PF01523.16 AHV94183.1 - 2.5e-28 99.7 0.1 3.9e-28 99.1 0.1 1.3 1 0 0 1 1 1 1 Putative modulator of DNA gyrase ABC_tran PF00005.27 AHV94184.1 - 7.9e-07 29.7 0.1 1.1e-06 29.3 0.1 1.1 1 0 0 1 1 1 1 ABC transporter AIG1 PF04548.16 AHV94184.1 - 0.022 14.1 0.1 0.025 13.9 0.1 1.1 1 0 0 1 1 1 0 AIG1 family AAA_29 PF13555.6 AHV94184.1 - 0.024 14.4 0.0 0.032 14.0 0.0 1.2 1 0 0 1 1 1 0 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 AHV94184.1 - 0.15 11.9 0.0 0.15 11.9 0.0 1.1 1 0 0 1 1 1 0 RsgA GTPase GDYXXLXY PF14345.6 AHV94186.1 - 6.8e-38 129.8 0.2 9.4e-38 129.4 0.2 1.2 1 0 0 1 1 1 1 GDYXXLXY protein DUF4401 PF14351.6 AHV94186.1 - 2.3e-27 96.1 28.0 2.3e-27 96.1 28.0 1.5 2 0 0 2 2 2 1 Domain of unknown function (DUF4401) RadC PF04002.15 AHV94187.1 - 9.9e-40 135.3 0.2 1.4e-39 134.8 0.2 1.2 1 0 0 1 1 1 1 RadC-like JAB domain Prok-JAB PF14464.6 AHV94187.1 - 0.0023 17.7 0.5 0.0039 17.0 0.5 1.4 1 1 0 1 1 1 1 Prokaryotic homologs of the JAB domain Peripla_BP_6 PF13458.6 AHV94188.1 - 3e-06 27.1 0.2 0.00018 21.3 0.0 2.0 2 0 0 2 2 2 2 Periplasmic binding protein Hydrolase_4 PF12146.8 AHV94188.1 - 0.022 14.1 0.0 0.03 13.6 0.0 1.2 1 0 0 1 1 1 0 Serine aminopeptidase, S33 Peripla_BP_5 PF13433.6 AHV94188.1 - 0.023 13.7 0.0 0.028 13.4 0.0 1.1 1 0 0 1 1 1 0 Periplasmic binding protein domain Formyl_trans_N PF00551.19 AHV94189.1 - 2.1e-07 30.8 0.0 2.2e-07 30.8 0.0 1.0 1 0 0 1 1 1 1 Formyl transferase PriA_3primeBD PF17764.1 AHV94192.1 - 2.6e-21 75.3 0.0 4.6e-21 74.5 0.0 1.4 1 0 0 1 1 1 1 3′ DNA-binding domain (3′BD) PriA_C PF18074.1 AHV94192.1 - 8.6e-16 58.5 0.1 2.1e-15 57.3 0.1 1.7 1 0 0 1 1 1 1 Primosomal protein N C-terminal domain DEAD PF00270.29 AHV94192.1 - 1.3e-11 44.6 0.0 3.1e-11 43.3 0.0 1.6 2 0 0 2 2 2 1 DEAD/DEAH box helicase ResIII PF04851.15 AHV94192.1 - 4.3e-09 36.6 0.0 1.2e-08 35.1 0.0 1.7 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 AHV94192.1 - 7.9e-09 35.8 0.0 5.4e-05 23.5 0.0 2.8 3 0 0 3 3 3 2 Helicase conserved C-terminal domain PriA_CRR PF18319.1 AHV94192.1 - 1e-05 25.4 6.6 1e-05 25.4 6.6 2.9 3 1 0 3 3 2 1 PriA DNA helicase Cys-rich region (CRR) domain AAA_30 PF13604.6 AHV94192.1 - 1.8e-05 24.5 1.8 3.2e-05 23.8 0.7 1.8 1 1 0 2 2 2 1 AAA domain zinc-ribbons_6 PF07191.12 AHV94192.1 - 0.011 15.7 1.3 0.023 14.7 1.3 1.5 1 0 0 1 1 1 0 zinc-ribbons AAA_22 PF13401.6 AHV94192.1 - 0.021 15.1 0.0 0.042 14.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 AHV94192.1 - 0.023 15.1 2.5 0.027 14.8 0.7 2.1 2 1 0 2 2 2 0 AAA ATPase domain HypA PF01155.19 AHV94192.1 - 0.23 11.5 6.6 0.25 11.4 0.7 2.4 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HlyD_D23 PF16576.5 AHV94193.1 - 9.6e-14 51.1 2.7 7.8e-13 48.1 2.7 2.0 1 1 0 1 1 1 1 Barrel-sandwich domain of CusB or HlyD membrane-fusion Biotin_lipoyl_2 PF13533.6 AHV94193.1 - 1.9e-09 37.2 6.2 2.4e-08 33.7 1.1 3.7 3 1 1 4 4 4 1 Biotin-lipoyl like HlyD_3 PF13437.6 AHV94193.1 - 1.1e-08 35.8 1.7 0.00033 21.3 0.2 3.4 2 1 0 2 2 2 2 HlyD family secretion protein Biotin_lipoyl PF00364.22 AHV94193.1 - 0.00023 20.9 0.2 0.011 15.6 0.1 2.5 2 0 0 2 2 2 1 Biotin-requiring enzyme VWA_3_C PF18571.1 AHV94193.1 - 0.08 12.8 0.0 0.27 11.1 0.0 1.9 1 0 0 1 1 1 0 von Willebrand factor type A C-terminal domain Aminotran_1_2 PF00155.21 AHV94194.1 - 1.2e-32 113.5 0.0 1.5e-32 113.2 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.7 AHV94194.1 - 3.7e-05 22.7 0.0 5.8e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 Alanine-glyoxylate amino-transferase BPD_transp_2 PF02653.16 AHV94195.1 - 1.8e-35 122.4 43.1 1.8e-35 122.4 43.1 1.7 1 1 1 2 2 2 1 Branched-chain amino acid transport system / permease component GrpE PF01025.19 AHV94196.1 - 6.2e-46 156.1 1.2 7.4e-46 155.8 1.2 1.0 1 0 0 1 1 1 1 GrpE Golgin_A5 PF09787.9 AHV94196.1 - 0.0079 15.7 1.6 0.01 15.3 1.6 1.1 1 0 0 1 1 1 1 Golgin subfamily A member 5 ATP-synt_B PF00430.18 AHV94196.1 - 0.014 15.5 10.7 0.02 15.0 10.7 1.2 1 0 0 1 1 1 0 ATP synthase B/B' CF(0) DUF148 PF02520.17 AHV94196.1 - 0.067 13.3 3.1 4.4 7.5 2.4 2.2 1 1 1 2 2 2 0 Domain of unknown function DUF148 Baculo_PEP_C PF04513.12 AHV94196.1 - 0.13 12.3 0.3 0.24 11.4 0.3 1.4 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF1664 PF07889.12 AHV94196.1 - 0.19 11.8 2.5 2.5 8.1 1.4 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) HrpB7 PF09486.10 AHV94196.1 - 0.26 11.7 14.0 0.69 10.3 14.0 1.6 1 1 0 1 1 1 0 Bacterial type III secretion protein (HrpB7) HisKA_3 PF07730.13 AHV94196.1 - 1.7 9.2 8.2 2.6 8.7 5.0 2.3 2 0 0 2 2 2 0 Histidine kinase COG2 PF06148.11 AHV94196.1 - 3.6 7.7 5.5 5.1 7.2 3.9 1.9 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 DDE_Tnp_ISL3 PF01610.17 AHV94197.1 - 5.4e-36 124.5 0.6 5.9e-36 124.4 0.6 1.0 1 0 0 1 1 1 1 Transposase SLT_L PF14718.6 AHV94197.1 - 0.0019 18.3 1.6 0.0041 17.2 1.6 1.5 1 0 0 1 1 1 1 Soluble lytic murein transglycosylase L domain tRNA-synt_1c PF00749.21 AHV94198.1 - 1.9e-98 329.2 0.0 2.3e-98 329.0 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.18 AHV94198.1 - 1.3e-53 181.4 0.0 2e-53 180.8 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain ABC2_membrane PF01061.24 AHV94199.1 - 1.2e-14 54.3 16.8 1.4e-14 54.0 16.8 1.0 1 0 0 1 1 1 1 ABC-2 type transporter APH PF01636.23 AHV94200.1 - 0.026 14.5 0.1 0.031 14.2 0.1 1.1 1 0 0 1 1 1 0 Phosphotransferase enzyme family DoxX_2 PF13564.6 AHV94200.1 - 0.041 14.0 3.9 0.6 10.2 0.8 2.0 1 1 1 2 2 2 0 DoxX-like family FdsD PF11390.8 AHV94200.1 - 0.09 13.1 0.0 0.18 12.2 0.0 1.5 1 0 0 1 1 1 0 NADH-dependant formate dehydrogenase delta subunit FdsD rve PF00665.26 AHV94201.1 - 7.9e-14 51.9 0.0 3.1e-12 46.7 0.0 2.1 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 AHV94201.1 - 9.1e-12 44.9 8.6 1.8e-11 44.0 8.6 1.5 1 0 0 1 1 1 1 HTH-like domain Rhomboid_SP PF12595.8 AHV94201.1 - 0.0029 17.0 0.4 0.96 8.8 0.0 2.2 1 1 1 2 2 2 2 Rhomboid serine protease rve PF00665.26 AHV94202.1 - 7.9e-14 51.9 0.0 3.1e-12 46.7 0.0 2.1 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 AHV94202.1 - 9.1e-12 44.9 8.6 1.8e-11 44.0 8.6 1.5 1 0 0 1 1 1 1 HTH-like domain Rhomboid_SP PF12595.8 AHV94202.1 - 0.0029 17.0 0.4 0.96 8.8 0.0 2.2 1 1 1 2 2 2 2 Rhomboid serine protease DAO PF01266.24 AHV94203.1 - 1.2e-45 156.7 7.7 1.5e-45 156.3 7.7 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 AHV94203.1 - 0.0032 16.6 0.1 0.0052 15.9 0.1 1.4 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.14 AHV94203.1 - 0.0041 15.9 0.3 1.3 7.7 0.0 2.2 2 0 0 2 2 2 2 HI0933-like protein FAD_binding_3 PF01494.19 AHV94203.1 - 0.02 14.2 0.5 0.033 13.4 0.5 1.3 1 0 0 1 1 1 0 FAD binding domain 3HCDH_N PF02737.18 AHV94203.1 - 0.022 14.7 0.0 0.031 14.2 0.0 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox_2 PF07992.14 AHV94203.1 - 0.033 13.4 0.2 0.13 11.5 0.1 1.8 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 AHV94203.1 - 0.069 13.7 0.4 0.19 12.3 0.4 1.7 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.18 AHV94203.1 - 0.12 12.7 0.0 0.19 12.0 0.0 1.3 1 0 0 1 1 1 0 TrkA-N domain NAD_binding_8 PF13450.6 AHV94203.1 - 0.14 12.5 2.6 0.33 11.2 2.6 1.6 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain ApbA PF02558.16 AHV94203.1 - 0.29 10.8 0.8 0.54 9.9 0.8 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA GIDA PF01134.22 AHV94203.1 - 0.66 9.0 2.0 1 8.3 2.0 1.3 1 0 0 1 1 1 0 Glucose inhibited division protein A His_biosynth PF00977.21 AHV94204.1 - 4.4e-90 301.1 0.3 5.1e-90 300.9 0.3 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.17 AHV94204.1 - 7.8e-07 28.5 0.1 0.00016 20.9 0.1 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) ThiG PF05690.14 AHV94204.1 - 3.9e-06 26.4 3.4 0.0066 15.8 0.6 2.2 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG TMP-TENI PF02581.17 AHV94204.1 - 1.8e-05 24.2 0.3 0.078 12.3 0.0 2.3 2 0 0 2 2 2 2 Thiamine monophosphate synthase NMO PF03060.15 AHV94204.1 - 6.1e-05 22.6 7.4 0.0039 16.6 1.8 2.2 1 1 1 2 2 2 2 Nitronate monooxygenase G3P_antiterm PF04309.12 AHV94204.1 - 0.00018 21.0 0.2 0.0066 15.9 0.1 2.1 2 0 0 2 2 2 1 Glycerol-3-phosphate responsive antiterminator IMPDH PF00478.25 AHV94204.1 - 0.0066 15.5 1.2 1.7 7.6 0.1 2.4 3 0 0 3 3 3 2 IMP dehydrogenase / GMP reductase domain DHO_dh PF01180.21 AHV94204.1 - 0.031 13.5 0.2 3.2 6.9 0.1 2.1 2 0 0 2 2 2 0 Dihydroorotate dehydrogenase Ham1p_like PF01725.16 AHV94205.1 - 1.7e-54 184.6 0.0 1.9e-54 184.4 0.0 1.0 1 0 0 1 1 1 1 Ham1 family Sulfatase PF00884.23 AHV94206.1 - 1.8e-36 126.1 0.0 2.4e-36 125.7 0.0 1.2 1 0 0 1 1 1 1 Sulfatase Sulf_transp PF04143.14 AHV94207.1 - 0.0012 18.4 0.2 0.0012 18.4 0.2 1.0 1 0 0 1 1 1 1 Sulphur transport ABC_tran PF00005.27 AHV94208.1 - 0.00058 20.4 0.0 0.00067 20.2 0.0 1.1 1 0 0 1 1 1 1 ABC transporter LexA_DNA_bind PF01726.16 AHV94210.1 - 4.8e-29 99.9 0.1 9e-29 99.1 0.1 1.4 1 0 0 1 1 1 1 LexA DNA binding domain Peptidase_S24 PF00717.23 AHV94210.1 - 1.7e-15 56.7 0.0 2.4e-15 56.2 0.0 1.2 1 0 0 1 1 1 1 Peptidase S24-like HTH_20 PF12840.7 AHV94210.1 - 0.00044 20.3 0.0 0.0012 18.8 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 AHV94210.1 - 0.0089 16.0 0.0 0.029 14.4 0.0 1.9 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HEAT_2 PF13646.6 AHV94210.1 - 0.033 14.6 0.1 0.07 13.5 0.1 1.5 1 0 0 1 1 1 0 HEAT repeats Rrf2 PF02082.20 AHV94210.1 - 0.062 13.6 0.0 0.14 12.5 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator Sigma70_r4 PF04545.16 AHV94210.1 - 0.11 12.0 0.1 0.54 9.8 0.0 2.0 2 0 0 2 2 2 0 Sigma-70, region 4 GGDEF PF00990.21 AHV94211.1 - 2.3e-44 151.0 0.3 6.9e-44 149.4 0.1 1.9 2 0 0 2 2 2 1 Diguanylate cyclase, GGDEF domain Protoglobin PF11563.8 AHV94211.1 - 1.3e-08 34.9 1.0 2.4e-08 34.1 1.0 1.5 1 0 0 1 1 1 1 Protoglobin GGDEF_2 PF17853.1 AHV94211.1 - 0.0036 17.6 1.7 0.0075 16.5 0.1 2.3 2 1 0 2 2 2 1 GGDEF-like domain Whirly PF08536.11 AHV94211.1 - 0.15 11.9 0.0 0.32 10.8 0.0 1.5 1 0 0 1 1 1 0 Whirly transcription factor Kdo PF06293.14 AHV94213.1 - 1.8e-43 148.3 0.0 2.8e-43 147.7 0.0 1.2 1 0 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family RIO1 PF01163.22 AHV94213.1 - 3.4e-10 39.8 0.0 8.1e-10 38.6 0.0 1.5 1 1 0 1 1 1 1 RIO1 family APH PF01636.23 AHV94213.1 - 1.3e-07 31.8 11.3 9.4e-05 22.4 3.8 2.4 1 1 1 2 2 2 2 Phosphotransferase enzyme family Pkinase PF00069.25 AHV94213.1 - 0.00018 21.0 0.0 0.00026 20.5 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain BPD_transp_1 PF00528.22 AHV94214.1 - 1.7e-24 86.6 11.5 2.7e-24 85.9 11.5 1.3 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component Ost5 PF05251.12 AHV94214.1 - 0.13 12.5 7.6 0.78 10.0 0.4 3.6 4 0 0 4 4 4 0 Oligosaccharyltransferase subunit 5 TMP-TENI PF02581.17 AHV94215.1 - 1.4e-36 125.5 0.0 1.7e-36 125.3 0.0 1.1 1 0 0 1 1 1 1 Thiamine monophosphate synthase NUDIX PF00293.28 AHV94215.1 - 3.5e-19 69.2 0.4 6.5e-19 68.3 0.4 1.4 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.6 AHV94215.1 - 2.8e-14 53.0 0.2 6e-14 52.0 0.2 1.6 1 0 0 1 1 1 1 NUDIX domain PhoH PF02562.16 AHV94216.1 - 7.4e-53 179.1 0.0 1.1e-52 178.5 0.0 1.2 1 0 0 1 1 1 1 PhoH-like protein PIN_4 PF13638.6 AHV94216.1 - 2.8e-39 134.4 0.1 4.2e-39 133.8 0.1 1.3 1 0 0 1 1 1 1 PIN domain AAA_30 PF13604.6 AHV94216.1 - 3.5e-08 33.4 0.0 1.9e-07 31.0 0.0 2.2 1 1 1 2 2 2 1 AAA domain AAA_22 PF13401.6 AHV94216.1 - 8.7e-05 22.8 0.1 0.093 13.0 0.0 2.7 3 0 0 3 3 3 2 AAA domain AAA_19 PF13245.6 AHV94216.1 - 0.00071 19.9 0.1 0.085 13.2 0.0 2.4 2 0 0 2 2 2 1 AAA domain NB-ARC PF00931.22 AHV94216.1 - 0.061 12.5 0.0 0.1 11.7 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_16 PF13191.6 AHV94216.1 - 0.1 13.0 0.8 1.9 8.8 0.0 3.0 2 1 1 3 3 3 0 AAA ATPase domain DEAD PF00270.29 AHV94216.1 - 0.1 12.3 0.2 3.8 7.2 0.2 2.3 1 1 0 2 2 2 0 DEAD/DEAH box helicase LysE PF01810.18 AHV94217.1 - 1.7e-11 43.9 0.3 1.9e-11 43.8 0.3 1.0 1 0 0 1 1 1 1 LysE type translocator AA_permease_C PF13906.6 AHV94217.1 - 0.0033 17.5 0.9 0.0062 16.6 0.9 1.5 1 0 0 1 1 1 1 C-terminus of AA_permease Colicin_V PF02674.16 AHV94217.1 - 0.0064 16.5 0.9 0.0073 16.3 0.9 1.1 1 0 0 1 1 1 1 Colicin V production protein Ribonuc_L-PSP PF01042.21 AHV94218.1 - 2.6e-19 69.4 0.1 3e-19 69.2 0.1 1.1 1 0 0 1 1 1 1 Endoribonuclease L-PSP TonB_dep_Rec PF00593.24 AHV94219.1 - 3.5e-43 149.2 35.3 4.5e-43 148.8 35.3 1.1 1 0 0 1 1 1 1 TonB dependent receptor Peptidase_S66 PF02016.15 AHV94220.1 - 6.9e-34 116.6 0.0 9.8e-34 116.1 0.0 1.2 1 0 0 1 1 1 1 LD-carboxypeptidase N-terminal domain Peptidase_S66C PF17676.1 AHV94220.1 - 2.3e-31 108.9 0.0 3.1e-31 108.5 0.0 1.2 1 0 0 1 1 1 1 LD-carboxypeptidase C-terminal domain Lactamase_B PF00753.27 AHV94222.1 - 1.3e-10 41.7 0.0 1.9e-10 41.1 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 AHV94222.1 - 0.0024 17.4 0.0 0.0047 16.5 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain DUF1348 PF07080.11 AHV94223.1 - 1e-63 213.0 3.8 1.2e-63 212.8 3.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1348) SnoaL_2 PF12680.7 AHV94223.1 - 1.2e-07 32.2 3.9 1.7e-07 31.8 3.9 1.2 1 0 0 1 1 1 1 SnoaL-like domain DUF4440 PF14534.6 AHV94223.1 - 0.052 14.0 0.6 0.08 13.4 0.6 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4440) ExbD PF02472.16 AHV94224.1 - 7e-32 110.3 0.0 8.4e-32 110.1 0.0 1.0 1 0 0 1 1 1 1 Biopolymer transport protein ExbD/TolR DUF2149 PF09919.9 AHV94224.1 - 0.09 13.0 0.3 0.17 12.1 0.3 1.5 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2149) TerC PF03741.16 AHV94225.1 - 1.4e-44 151.9 17.0 1.6e-44 151.8 13.8 1.9 2 0 0 2 2 2 1 Integral membrane protein TerC family Trp_oprn_chp PF09534.10 AHV94225.1 - 0.032 14.0 1.0 0.032 14.0 1.0 2.6 2 1 1 3 3 3 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) Penaeidin PF05927.11 AHV94227.1 - 0.084 13.6 0.0 0.11 13.3 0.0 1.2 1 0 0 1 1 1 0 Penaeidin DDE_Tnp_ISL3 PF01610.17 AHV94229.1 - 6.7e-65 219.2 1.2 9.3e-65 218.7 0.3 1.6 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV94229.1 - 1.4e-11 43.6 0.1 3.6e-11 42.3 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV94229.1 - 5.3e-09 36.6 11.2 1.1e-08 35.6 11.2 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV94229.1 - 0.0056 16.7 0.2 0.016 15.3 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain NOB1_Zn_bind PF08772.11 AHV94229.1 - 0.017 15.2 0.2 1.2 9.3 0.0 2.5 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like SLT_L PF14718.6 AHV94229.1 - 0.023 14.8 1.3 0.023 14.8 1.3 1.8 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain zf-IS66 PF13005.7 AHV94229.1 - 8.2 6.9 9.6 3.6 8.1 6.6 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 GMC_oxred_C PF05199.13 AHV94231.1 - 3.8e-38 131.3 0.1 5.6e-38 130.7 0.1 1.3 1 0 0 1 1 1 1 GMC oxidoreductase GMC_oxred_N PF00732.19 AHV94231.1 - 2e-26 93.0 0.0 2.7e-26 92.6 0.0 1.2 1 0 0 1 1 1 1 GMC oxidoreductase FAD_binding_2 PF00890.24 AHV94231.1 - 0.14 11.3 0.0 0.17 10.9 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain ELFV_dehydrog PF00208.21 AHV94232.1 - 4.4e-76 255.8 1.7 5.8e-76 255.4 1.7 1.2 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 AHV94232.1 - 1.1e-55 187.0 0.3 3.6e-55 185.4 0.1 1.9 2 0 0 2 2 2 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.19 AHV94232.1 - 0.0026 17.1 0.2 0.0048 16.3 0.2 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Bac_GDH PF05088.12 AHV94232.1 - 0.0092 13.5 0.1 0.02 12.4 0.0 1.5 2 0 0 2 2 2 1 Bacterial NAD-glutamate dehydrogenase AdoHcyase_NAD PF00670.21 AHV94232.1 - 0.049 13.7 0.3 0.11 12.6 0.3 1.5 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ANTAR PF03861.14 AHV94232.1 - 0.12 12.2 0.5 0.39 10.6 0.2 2.1 3 0 0 3 3 3 0 ANTAR domain G_glu_transpept PF01019.21 AHV94233.1 - 5e-112 375.3 0.1 5.8e-112 375.1 0.1 1.0 1 0 0 1 1 1 1 Gamma-glutamyltranspeptidase SpoU_methylase PF00588.19 AHV94234.1 - 1.7e-39 135.2 0.0 2.4e-39 134.7 0.0 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family SpoU_sub_bind PF08032.12 AHV94234.1 - 1.7e-16 60.3 0.1 4.5e-16 58.9 0.0 1.7 2 0 0 2 2 2 1 RNA 2'-O ribose methyltransferase substrate binding TetR_C_7 PF14246.6 AHV94234.1 - 0.1 12.7 0.5 0.23 11.5 0.2 1.8 2 0 0 2 2 2 0 AefR-like transcriptional repressor, C-terminal domain BPD_transp_1 PF00528.22 AHV94235.1 - 5e-38 130.7 18.1 5e-38 130.7 18.1 1.6 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component LysR_substrate PF03466.20 AHV94236.1 - 3e-39 134.5 13.0 3e-39 134.5 13.0 1.6 2 0 0 2 2 2 1 LysR substrate binding domain HTH_1 PF00126.27 AHV94236.1 - 5.3e-21 74.3 0.4 1.3e-20 73.1 0.4 1.7 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_20 PF12840.7 AHV94236.1 - 0.062 13.4 3.3 0.12 12.5 0.0 3.0 3 0 0 3 3 3 0 Helix-turn-helix domain NMT1 PF09084.11 AHV94237.1 - 2.9e-23 83.0 0.6 4.3e-23 82.4 0.6 1.2 1 0 0 1 1 1 1 NMT1/THI5 like NMT1_2 PF13379.6 AHV94237.1 - 6.7e-23 81.7 0.2 1e-22 81.1 0.2 1.2 1 0 0 1 1 1 1 NMT1-like family Phosphonate-bd PF12974.7 AHV94237.1 - 3.2e-09 36.8 0.2 6.8e-09 35.7 0.1 1.6 2 0 0 2 2 2 1 ABC transporter, phosphonate, periplasmic substrate-binding protein SBP_bac_3 PF00497.20 AHV94237.1 - 6.3e-06 25.8 0.1 0.0042 16.5 0.1 2.2 1 1 1 2 2 2 2 Bacterial extracellular solute-binding proteins, family 3 NMT1_3 PF16868.5 AHV94237.1 - 1.4e-05 24.6 0.1 2.3e-05 23.9 0.1 1.3 1 0 0 1 1 1 1 NMT1-like family OpuAC PF04069.12 AHV94237.1 - 0.037 13.6 0.4 0.14 11.7 0.2 1.9 1 1 1 2 2 2 0 Substrate binding domain of ABC-type glycine betaine transport system TctC PF03401.14 AHV94238.1 - 4.2e-68 229.4 1.8 4.9e-68 229.2 1.8 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor Cys_Met_Meta_PP PF01053.20 AHV94239.1 - 2.7e-96 322.4 0.0 3.2e-96 322.2 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 AHV94239.1 - 2.4e-05 23.8 0.2 6.4e-05 22.4 0.2 1.7 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family KdpC PF02669.15 AHV94240.1 - 9.3e-73 243.9 0.0 1e-72 243.8 0.0 1.0 1 0 0 1 1 1 1 K+-transporting ATPase, c chain LapA_dom PF06305.11 AHV94241.1 - 4.9e-18 64.7 0.0 4.9e-18 64.7 0.0 1.8 2 0 0 2 2 2 1 Lipopolysaccharide assembly protein A domain HemY_N PF07219.13 AHV94241.1 - 0.00042 20.5 0.9 0.00042 20.5 0.9 1.8 2 0 0 2 2 2 1 HemY protein N-terminus DUF4396 PF14342.6 AHV94241.1 - 0.011 16.1 0.2 0.013 15.9 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4396) DUF4381 PF14316.6 AHV94241.1 - 0.17 12.1 0.1 0.17 12.1 0.1 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4381) Ribosomal_S2 PF00318.20 AHV94243.1 - 4.3e-94 313.7 0.0 5e-94 313.5 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S2 V_ATPase_prox PF18274.1 AHV94243.1 - 0.052 13.5 0.0 0.14 12.1 0.0 1.7 1 0 0 1 1 1 0 Vacuolar ATPase Subunit I N-terminal proximal lobe ABC_tran PF00005.27 AHV94244.1 - 1.3e-27 97.0 0.0 1.7e-27 96.6 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 AHV94244.1 - 4.2e-09 36.6 0.8 0.0017 18.2 0.1 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 AHV94244.1 - 0.00039 20.1 0.3 0.00082 19.1 0.1 1.6 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_16 PF13191.6 AHV94244.1 - 0.00064 20.1 0.2 0.0012 19.3 0.2 1.5 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 AHV94244.1 - 0.00086 18.8 0.2 0.16 11.4 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 AHV94244.1 - 0.006 16.3 0.0 0.011 15.5 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 AHV94244.1 - 0.042 14.3 0.0 0.059 13.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 AHV94244.1 - 0.062 13.2 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_27 PF13514.6 AHV94244.1 - 0.076 12.6 0.0 0.21 11.2 0.0 1.7 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 AHV94244.1 - 0.091 12.7 0.2 0.22 11.4 0.2 1.6 1 0 0 1 1 1 0 NACHT domain MukB PF04310.12 AHV94244.1 - 0.14 12.0 0.1 0.22 11.3 0.1 1.3 1 0 0 1 1 1 0 MukB N-terminal AAA_15 PF13175.6 AHV94244.1 - 0.36 10.5 0.0 0.53 9.9 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain GGDEF PF00990.21 AHV94245.1 - 1.6e-42 145.0 0.0 3.4e-42 143.9 0.0 1.6 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain dCache_1 PF02743.18 AHV94245.1 - 2.2e-17 63.7 0.0 4.8e-17 62.6 0.0 1.5 2 0 0 2 2 2 1 Cache domain GGDEF_2 PF17853.1 AHV94245.1 - 7.4e-05 23.0 4.1 0.0013 19.0 0.4 3.2 3 0 0 3 3 3 1 GGDEF-like domain ABC_trans_aux PF03886.13 AHV94245.1 - 0.0012 18.4 0.1 1.8 8.1 0.0 2.7 1 1 1 2 2 2 2 ABC-type transport auxiliary lipoprotein component sCache_3_2 PF17203.4 AHV94245.1 - 0.0033 17.6 0.1 0.021 15.0 0.1 2.3 1 1 1 2 2 2 1 Single cache domain 3 HAMP PF00672.25 AHV94245.1 - 0.035 14.5 0.3 0.12 12.8 0.3 1.9 1 0 0 1 1 1 0 HAMP domain GRDA PF04723.14 AHV94245.1 - 0.041 13.7 0.0 0.071 12.9 0.0 1.4 1 0 0 1 1 1 0 Glycine reductase complex selenoprotein A GLE1 PF07817.13 AHV94245.1 - 0.14 11.4 0.0 0.23 10.6 0.0 1.3 1 0 0 1 1 1 0 GLE1-like protein Ribosomal_S8 PF00410.19 AHV94247.1 - 1e-50 170.9 0.1 1.1e-50 170.8 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S8 PAPS_reduct PF01507.19 AHV94248.1 - 2.5e-46 157.9 0.0 3.1e-46 157.6 0.0 1.1 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family ATP_bind_3 PF01171.20 AHV94248.1 - 0.085 12.6 0.0 0.13 12.0 0.0 1.3 1 0 0 1 1 1 0 PP-loop family Kdo PF06293.14 AHV94249.1 - 0.17 11.2 0.0 0.31 10.4 0.0 1.4 1 0 0 1 1 1 0 Lipopolysaccharide kinase (Kdo/WaaP) family AsnC_trans_reg PF01037.21 AHV94250.1 - 6.3e-26 90.2 0.1 7.4e-26 89.9 0.1 1.1 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HHH_5 PF14520.6 AHV94250.1 - 0.028 15.0 0.0 0.047 14.3 0.0 1.3 1 0 0 1 1 1 0 Helix-hairpin-helix domain PRP9_N PF16958.5 AHV94250.1 - 0.078 13.0 0.2 0.16 12.0 0.0 1.5 2 0 0 2 2 2 0 Pre-mRNA-splicing factor PRP9 N-terminus Peripla_BP_2 PF01497.18 AHV94251.1 - 2e-41 142.1 0.0 2.5e-41 141.8 0.0 1.0 1 0 0 1 1 1 1 Periplasmic binding protein Aminotran_1_2 PF00155.21 AHV94252.1 - 8.8e-32 110.7 0.0 1.1e-31 110.3 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II GntR PF00392.21 AHV94252.1 - 6.6e-17 60.9 0.2 2e-16 59.4 0.2 1.9 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family Aminotran_MocR PF12897.7 AHV94252.1 - 0.00017 20.5 0.0 0.00028 19.8 0.0 1.4 1 1 0 1 1 1 1 Alanine-glyoxylate amino-transferase HTH_41 PF14502.6 AHV94252.1 - 0.002 17.7 0.0 0.0038 16.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.20 AHV94252.1 - 0.061 13.7 0.0 0.16 12.4 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator HTH_Crp_2 PF13545.6 AHV94252.1 - 0.075 13.0 0.2 0.32 11.0 0.1 2.1 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain Lactamase_B_2 PF12706.7 AHV94252.1 - 0.075 12.5 0.1 0.23 10.9 0.0 1.8 2 1 0 2 2 2 0 Beta-lactamase superfamily domain CTP_transf_3 PF02348.19 AHV94253.1 - 2.3e-51 174.8 0.0 3e-51 174.5 0.0 1.0 1 0 0 1 1 1 1 Cytidylyltransferase NTP_transf_3 PF12804.7 AHV94253.1 - 2.9e-10 40.7 5.8 6.1e-10 39.7 5.6 1.7 1 1 0 1 1 1 1 MobA-like NTP transferase domain Xan_ur_permease PF00860.20 AHV94254.1 - 1.6e-89 300.3 50.3 1.6e-89 300.3 50.3 1.4 2 0 0 2 2 2 1 Permease family Sulfate_transp PF00916.20 AHV94255.1 - 1.1e-80 271.2 14.1 1.3e-80 271.0 14.1 1.0 1 0 0 1 1 1 1 Sulfate permease family MmoB_DmpM PF02406.17 AHV94256.1 - 4.2e-26 91.0 0.0 4.9e-26 90.7 0.0 1.1 1 0 0 1 1 1 1 MmoB/DmpM family PTA_PTB PF01515.19 AHV94257.1 - 2.4e-32 112.5 0.0 3.6e-32 112.0 0.0 1.2 1 0 0 1 1 1 1 Phosphate acetyl/butaryl transferase malic PF00390.19 AHV94257.1 - 1.1e-27 97.0 0.1 4.3e-25 88.6 0.1 2.7 1 1 0 1 1 1 1 Malic enzyme, N-terminal domain Malic_M PF03949.15 AHV94257.1 - 4.6e-20 72.0 1.1 1.5e-19 70.3 1.1 1.7 1 1 0 1 1 1 1 Malic enzyme, NAD binding domain Malate_DH PF12434.8 AHV94257.1 - 0.0014 18.6 0.1 0.0033 17.4 0.1 1.6 1 0 0 1 1 1 1 Malate dehydrogenase enzyme LysR_substrate PF03466.20 AHV94258.1 - 7e-35 120.3 4.0 7e-35 120.3 4.0 1.4 2 0 0 2 2 2 1 LysR substrate binding domain HTH_1 PF00126.27 AHV94258.1 - 4.2e-13 49.0 1.9 1.4e-12 47.3 1.9 2.0 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family SnoaL_2 PF12680.7 AHV94259.1 - 1.8e-21 76.7 0.1 2e-21 76.5 0.1 1.0 1 0 0 1 1 1 1 SnoaL-like domain SnoaL PF07366.12 AHV94259.1 - 5.9e-10 39.0 0.0 8.4e-10 38.5 0.0 1.2 1 0 0 1 1 1 1 SnoaL-like polyketide cyclase DUF4440 PF14534.6 AHV94259.1 - 0.00035 20.9 0.0 0.00042 20.7 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4440) SnoaL_4 PF13577.6 AHV94259.1 - 0.0013 18.9 0.0 0.0017 18.5 0.0 1.2 1 0 0 1 1 1 1 SnoaL-like domain SnoaL_3 PF13474.6 AHV94259.1 - 0.0016 18.7 0.1 0.0021 18.3 0.1 1.2 1 0 0 1 1 1 1 SnoaL-like domain NTF2 PF02136.20 AHV94259.1 - 0.22 12.1 0.0 0.75 10.4 0.0 1.8 1 1 0 1 1 1 0 Nuclear transport factor 2 (NTF2) domain RNA_pol_Rpb2_6 PF00562.28 AHV94260.1 - 9.7e-159 528.6 0.1 1e-157 525.2 0.1 2.2 2 0 0 2 2 2 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_1 PF04563.15 AHV94260.1 - 2.7e-35 121.7 0.0 1.6e-34 119.3 0.0 2.2 2 1 0 2 2 2 1 RNA polymerase beta subunit RNA_pol_Rpb2_3 PF04565.16 AHV94260.1 - 3.2e-32 110.5 0.0 7e-32 109.4 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_7 PF04560.20 AHV94260.1 - 5.3e-26 90.8 0.0 1.2e-25 89.8 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_2 PF04561.14 AHV94260.1 - 2.2e-25 89.4 0.0 2.4e-16 59.9 0.0 2.5 2 0 0 2 2 2 2 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_45 PF10385.9 AHV94260.1 - 5e-25 87.5 2.9 1.2e-24 86.4 0.4 2.8 3 0 0 3 3 3 1 RNA polymerase beta subunit external 1 domain UbiD PF01977.16 AHV94260.1 - 0.012 14.6 0.0 0.22 10.3 0.0 2.5 2 1 0 2 2 2 0 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Biotin_lipoyl_2 PF13533.6 AHV94260.1 - 0.11 12.3 0.1 0.39 10.6 0.1 1.9 1 0 0 1 1 1 0 Biotin-lipoyl like RnfC_N PF13375.6 AHV94260.1 - 0.16 12.0 0.0 0.93 9.5 0.0 2.3 2 0 0 2 2 2 0 RnfC Barrel sandwich hybrid domain Peptidase_M41 PF01434.18 AHV94261.1 - 4.8e-70 235.3 0.3 7.4e-70 234.7 0.3 1.3 1 0 0 1 1 1 1 Peptidase family M41 AAA PF00004.29 AHV94261.1 - 5.6e-46 156.2 0.0 2e-45 154.4 0.0 2.0 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 AHV94261.1 - 8e-14 51.2 0.0 1.6e-13 50.2 0.0 1.5 1 0 0 1 1 1 1 AAA+ lid domain FtsH_ext PF06480.15 AHV94261.1 - 2.3e-07 31.1 0.1 8.9e-07 29.2 0.0 2.0 2 0 0 2 2 2 1 FtsH Extracellular TIP49 PF06068.13 AHV94261.1 - 2.2e-05 23.9 0.0 5.5e-05 22.5 0.0 1.6 1 0 0 1 1 1 1 TIP49 P-loop domain AAA_5 PF07728.14 AHV94261.1 - 5.9e-05 23.1 0.0 0.00045 20.2 0.0 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) RuvB_N PF05496.12 AHV94261.1 - 0.0011 18.7 0.0 0.0054 16.5 0.0 2.1 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 AHV94261.1 - 0.0042 17.5 0.2 0.17 12.2 0.1 2.5 1 1 1 2 2 2 1 AAA ATPase domain IstB_IS21 PF01695.17 AHV94261.1 - 0.012 15.3 0.0 0.025 14.3 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein Mg_chelatase PF01078.21 AHV94261.1 - 0.013 14.9 0.2 0.028 13.8 0.2 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_2 PF07724.14 AHV94261.1 - 0.015 15.5 0.0 0.13 12.4 0.0 2.5 2 0 0 2 2 2 0 AAA domain (Cdc48 subfamily) AAA_33 PF13671.6 AHV94261.1 - 0.016 15.4 0.0 0.031 14.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 AHV94261.1 - 0.028 13.7 0.4 0.075 12.3 0.0 1.9 2 0 0 2 2 2 0 Zeta toxin AAA_22 PF13401.6 AHV94261.1 - 0.075 13.3 0.2 1.3 9.3 0.2 2.4 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 AHV94261.1 - 0.13 12.4 0.1 0.59 10.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain Sigma54_activat PF00158.26 AHV94261.1 - 0.15 11.8 0.1 0.43 10.3 0.1 1.8 1 1 0 1 1 1 0 Sigma-54 interaction domain AAA_17 PF13207.6 AHV94261.1 - 0.2 12.1 0.7 0.63 10.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.27 AHV94261.1 - 0.25 11.8 0.6 0.6 10.6 0.1 1.8 2 0 0 2 2 2 0 ABC transporter ATPase PF06745.13 AHV94262.1 - 1.2e-17 64.0 0.1 4.7e-11 42.5 0.0 2.2 1 1 1 2 2 2 2 KaiC AAA_25 PF13481.6 AHV94262.1 - 1.5e-16 60.5 1.4 5e-16 58.9 1.4 1.8 1 1 0 1 1 1 1 AAA domain Rubredoxin_2 PF18073.1 AHV94262.1 - 7e-12 44.8 5.2 1.1e-11 44.2 5.2 1.3 1 0 0 1 1 1 1 Rubredoxin metal binding domain DnaB_C PF03796.15 AHV94262.1 - 3.8e-07 29.7 0.2 2e-06 27.4 0.2 1.9 1 1 0 1 1 1 1 DnaB-like helicase C terminal domain ChlI PF13541.6 AHV94262.1 - 6.5e-07 29.2 0.6 7.8e-06 25.7 0.0 2.7 2 1 1 3 3 3 1 Subunit ChlI of Mg-chelatase AAA_22 PF13401.6 AHV94262.1 - 8.9e-07 29.3 0.1 2.1e-06 28.1 0.1 1.5 1 0 0 1 1 1 1 AAA domain Rad51 PF08423.11 AHV94262.1 - 5.1e-06 25.9 0.4 0.0033 16.7 0.4 2.3 1 1 0 1 1 1 1 Rad51 AAA_16 PF13191.6 AHV94262.1 - 1.3e-05 25.6 1.2 9.4e-05 22.9 1.2 2.2 1 1 0 1 1 1 1 AAA ATPase domain GvpD PF07088.11 AHV94262.1 - 0.00021 20.1 0.0 0.028 13.1 0.0 2.2 2 0 0 2 2 2 1 GvpD gas vesicle protein Lon_C PF05362.13 AHV94262.1 - 0.00075 19.1 0.2 0.0022 17.6 0.0 1.8 2 1 0 2 2 2 1 Lon protease (S16) C-terminal proteolytic domain NTPase_1 PF03266.15 AHV94262.1 - 0.0059 16.5 0.1 0.078 12.9 0.0 2.2 1 1 1 2 2 2 1 NTPase PhnA_Zn_Ribbon PF08274.12 AHV94262.1 - 0.0073 16.2 0.2 2.5 8.1 0.0 2.5 2 0 0 2 2 2 1 PhnA Zinc-Ribbon AAA_5 PF07728.14 AHV94262.1 - 0.008 16.2 0.0 0.017 15.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_24 PF13479.6 AHV94262.1 - 0.01 15.6 0.0 0.044 13.5 0.0 2.0 1 1 1 2 2 2 0 AAA domain RecA PF00154.21 AHV94262.1 - 0.034 13.6 0.8 0.053 13.0 0.8 1.4 1 0 0 1 1 1 0 recA bacterial DNA recombination protein TackOD1 PF18551.1 AHV94262.1 - 0.054 13.2 0.2 0.087 12.5 0.2 1.2 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 DAP3 PF10236.9 AHV94262.1 - 0.055 12.6 0.1 0.091 11.9 0.1 1.2 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 DUF2075 PF09848.9 AHV94262.1 - 0.07 12.3 0.4 0.19 10.9 0.1 1.6 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_14 PF13173.6 AHV94262.1 - 0.075 13.1 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 AHV94262.1 - 0.09 13.0 0.1 0.17 12.1 0.1 1.4 1 0 0 1 1 1 0 AAA domain MCM PF00493.23 AHV94262.1 - 0.093 11.8 0.0 0.18 10.9 0.0 1.4 1 0 0 1 1 1 0 MCM P-loop domain TniB PF05621.11 AHV94262.1 - 0.099 12.0 0.2 0.43 10.0 0.2 2.0 1 1 0 1 1 1 0 Bacterial TniB protein AAA_29 PF13555.6 AHV94262.1 - 0.11 12.2 0.4 0.3 10.9 0.4 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.29 AHV94262.1 - 0.14 12.6 0.1 0.27 11.7 0.1 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 AHV94262.1 - 0.14 12.0 0.2 0.28 11.1 0.2 1.6 1 1 0 1 1 1 0 NACHT domain zf-RING_10 PF16685.5 AHV94262.1 - 0.19 11.9 0.3 0.35 11.0 0.3 1.3 1 0 0 1 1 1 0 zinc RING finger of MSL2 zf-C3HC4_3 PF13920.6 AHV94262.1 - 0.22 11.4 1.0 0.4 10.6 1.0 1.4 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) TctC PF03401.14 AHV94263.1 - 1.3e-92 309.7 0.1 1.7e-92 309.4 0.1 1.1 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor SBP_bac_8 PF13416.6 AHV94263.1 - 0.016 15.1 1.6 0.036 13.9 0.4 1.9 1 1 1 2 2 2 0 Bacterial extracellular solute-binding protein OpuAC PF04069.12 AHV94263.1 - 0.11 12.1 0.1 9.4 5.7 0.0 2.2 1 1 1 2 2 2 0 Substrate binding domain of ABC-type glycine betaine transport system LrgB PF04172.16 AHV94264.1 - 9e-63 211.6 12.8 1.4e-62 211.0 12.8 1.3 1 0 0 1 1 1 1 LrgB-like family LrgA PF03788.14 AHV94264.1 - 1.8e-16 59.8 17.9 1.2e-15 57.2 3.1 3.5 3 0 0 3 3 3 2 LrgA family EptA_B_N PF08019.12 AHV94264.1 - 0.034 14.0 6.2 0.041 13.8 4.7 1.9 1 1 1 2 2 2 0 Phosphoethanolamine transferase EptA/EptB DUF2070 PF09843.9 AHV94264.1 - 2.4 6.4 10.0 2.9 6.1 10.0 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Chorismate_bind PF00425.18 AHV94265.1 - 6.7e-88 294.6 0.0 8e-88 294.3 0.0 1.1 1 0 0 1 1 1 1 chorismate binding enzyme Ala_racemase_N PF01168.20 AHV94266.1 - 2e-06 27.6 0.1 2.1e-06 27.5 0.1 1.0 1 0 0 1 1 1 1 Alanine racemase, N-terminal domain DUF4401 PF14351.6 AHV94267.1 - 0.0081 15.5 8.9 0.015 14.6 8.9 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF4401) rve PF00665.26 AHV94268.1 - 1.5e-25 89.7 0.0 2.3e-25 89.1 0.0 1.3 1 0 0 1 1 1 1 Integrase core domain HTH_21 PF13276.6 AHV94268.1 - 5.3e-12 45.7 11.3 1.1e-11 44.6 11.3 1.6 1 0 0 1 1 1 1 HTH-like domain rve_3 PF13683.6 AHV94268.1 - 1.4e-08 34.4 1.0 5.2e-08 32.6 0.0 2.3 2 0 0 2 2 2 1 Integrase core domain DDE_Tnp_ISAZ013 PF07592.11 AHV94268.1 - 0.11 11.5 0.1 0.18 10.8 0.1 1.3 1 0 0 1 1 1 0 Rhodopirellula transposase DDE domain DUF1415 PF07209.12 AHV94270.1 - 6.8e-27 94.3 0.0 7.5e-27 94.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1415) rve PF00665.26 AHV94271.1 - 2.9e-32 111.3 0.7 4.3e-32 110.8 0.1 1.6 2 0 0 2 2 1 1 Integrase core domain LZ_Tnp_IS481 PF13011.6 AHV94271.1 - 7.7e-22 77.6 2.7 1.1e-19 70.7 0.4 2.6 1 1 1 2 2 2 1 leucine-zipper of insertion element IS481 rve_3 PF13683.6 AHV94271.1 - 5e-19 67.8 2.7 1.2e-18 66.6 2.7 1.7 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.6 AHV94271.1 - 6.1e-17 60.9 4.4 1.2e-07 31.3 0.1 2.7 2 0 0 2 2 2 2 Homeodomain-like domain HTH_28 PF13518.6 AHV94271.1 - 1.5e-15 57.1 6.5 5.9e-11 42.3 0.1 3.4 4 0 0 4 4 3 2 Helix-turn-helix domain HTH_29 PF13551.6 AHV94271.1 - 9.8e-12 44.7 0.6 2.6e-06 27.4 0.0 2.6 2 0 0 2 2 2 2 Winged helix-turn helix HTH_32 PF13565.6 AHV94271.1 - 9.4e-11 42.2 0.7 9.4e-11 42.2 0.7 2.4 2 1 0 2 2 2 1 Homeodomain-like domain HTH_38 PF13936.6 AHV94271.1 - 1.5e-06 27.9 0.6 5.1e-06 26.1 0.5 2.1 2 0 0 2 2 1 1 Helix-turn-helix domain MarR_2 PF12802.7 AHV94271.1 - 8e-06 25.6 3.1 9.5e-05 22.2 1.2 2.6 2 0 0 2 2 2 1 MarR family HTH_31 PF13560.6 AHV94271.1 - 1.4e-05 25.4 1.7 0.00059 20.1 0.4 3.2 3 0 0 3 3 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 AHV94271.1 - 3e-05 23.6 0.1 0.0064 16.1 0.3 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 AHV94271.1 - 4.6e-05 22.9 0.1 0.00056 19.4 0.2 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 YdaS_antitoxin PF15943.5 AHV94271.1 - 0.00022 21.0 0.2 0.24 11.3 0.0 2.8 2 0 0 2 2 2 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_Tnp_ISL3 PF13542.6 AHV94271.1 - 0.00023 20.5 8.5 0.002 17.5 0.6 3.9 4 0 0 4 4 3 1 Helix-turn-helix domain of transposase family ISL3 HTH_24 PF13412.6 AHV94271.1 - 0.00028 20.4 0.2 0.0021 17.6 0.3 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_3 PF01381.22 AHV94271.1 - 0.00032 20.7 0.7 0.013 15.5 0.3 2.5 2 0 0 2 2 2 1 Helix-turn-helix HTH_Crp_2 PF13545.6 AHV94271.1 - 0.0004 20.3 0.3 0.0027 17.6 0.2 2.3 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain Trp_repressor PF01371.19 AHV94271.1 - 0.00081 19.5 0.2 0.006 16.7 0.1 2.2 2 0 0 2 2 2 1 Trp repressor protein CENP-B_N PF04218.13 AHV94271.1 - 0.0016 18.0 0.0 1.6 8.5 0.1 2.3 2 0 0 2 2 2 1 CENP-B N-terminal DNA-binding domain LacI PF00356.21 AHV94271.1 - 0.0017 18.1 1.8 0.0046 16.7 0.7 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family Fe_dep_repress PF01325.19 AHV94271.1 - 0.002 18.3 0.0 0.034 14.4 0.1 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.20 AHV94271.1 - 0.0023 17.8 0.0 0.93 9.4 0.0 2.5 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 AHV94271.1 - 0.0025 17.6 1.3 0.035 13.9 0.7 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_psq PF05225.16 AHV94271.1 - 0.0025 17.5 0.7 2.3 8.0 0.4 2.9 3 0 0 3 3 3 1 helix-turn-helix, Psq domain HTH_11 PF08279.12 AHV94271.1 - 0.0026 17.7 0.4 0.015 15.3 0.5 2.2 2 0 0 2 2 2 1 HTH domain SpoIIID PF12116.8 AHV94271.1 - 0.0026 17.8 0.0 1.1 9.4 0.0 2.4 2 0 0 2 2 2 1 Stage III sporulation protein D HTH_AsnC-type PF13404.6 AHV94271.1 - 0.0036 17.1 2.7 0.045 13.6 1.1 2.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain RepB PF07506.11 AHV94271.1 - 0.0042 17.2 0.1 0.55 10.3 0.1 2.3 1 1 1 2 2 2 1 RepB plasmid partitioning protein HTH_17 PF12728.7 AHV94271.1 - 0.0043 17.2 0.7 6.1 7.1 0.0 3.3 3 1 0 3 3 3 0 Helix-turn-helix domain HTH_Tnp_1 PF01527.20 AHV94271.1 - 0.005 17.1 0.5 0.11 12.8 0.0 2.7 1 1 1 2 2 2 1 Transposase GntR PF00392.21 AHV94271.1 - 0.0053 16.4 0.8 0.5 10.1 0.3 2.5 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_10 PF04967.12 AHV94271.1 - 0.0077 16.0 0.1 0.049 13.4 0.2 2.2 2 0 0 2 2 2 1 HTH DNA binding domain HTH_35 PF13693.6 AHV94271.1 - 0.0093 16.0 1.5 0.073 13.1 0.6 2.7 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding UPF0175 PF03683.13 AHV94271.1 - 0.014 15.1 0.4 0.1 12.3 0.1 2.4 2 1 0 2 2 2 0 Uncharacterised protein family (UPF0175) HTH_30 PF13556.6 AHV94271.1 - 0.015 15.1 0.1 2 8.3 0.0 2.6 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain HTH_37 PF13744.6 AHV94271.1 - 0.016 15.2 0.1 0.13 12.3 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Tnp_4 PF13613.6 AHV94271.1 - 0.016 14.9 0.1 0.067 12.9 0.0 2.0 2 0 0 2 2 1 0 Helix-turn-helix of DDE superfamily endonuclease HTH_36 PF13730.6 AHV94271.1 - 0.02 14.8 0.1 0.58 10.2 0.0 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain KORA PF16509.5 AHV94271.1 - 0.034 14.4 0.1 3.6 8.0 0.0 3.0 3 0 0 3 3 3 0 TrfB plasmid transcriptional repressor MarR PF01047.22 AHV94271.1 - 0.045 13.7 0.1 0.14 12.1 0.1 1.8 2 0 0 2 2 1 0 MarR family DDE_Tnp_IS240 PF13610.6 AHV94271.1 - 0.048 13.9 0.1 0.071 13.3 0.1 1.3 1 0 0 1 1 1 0 DDE domain Crp PF00325.20 AHV94271.1 - 0.05 13.3 3.2 0.062 13.0 0.5 2.6 3 0 0 3 3 3 0 Bacterial regulatory proteins, crp family P22_Cro PF14549.6 AHV94271.1 - 0.051 13.4 1.6 9.6 6.1 0.1 2.5 2 0 0 2 2 2 0 DNA-binding transcriptional regulator Cro DUF746 PF05344.11 AHV94271.1 - 0.085 12.7 0.1 0.98 9.3 0.0 2.3 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) HTH_1 PF00126.27 AHV94271.1 - 0.1 12.5 2.8 4.7 7.2 0.5 2.6 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_26 PF13443.6 AHV94271.1 - 0.17 12.3 0.0 3.6 8.1 0.1 2.8 3 0 0 3 3 3 0 Cro/C1-type HTH DNA-binding domain HTH_8 PF02954.19 AHV94271.1 - 0.19 11.5 0.9 14 5.5 0.7 2.7 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family HTH_Tnp_Tc3_2 PF01498.18 AHV94271.1 - 0.27 11.5 2.6 0.47 10.7 0.1 2.6 3 0 0 3 3 1 0 Transposase HTH_33 PF13592.6 AHV94271.1 - 0.56 9.9 3.1 2.9 7.6 0.1 3.4 4 0 0 4 4 2 0 Winged helix-turn helix MerR PF00376.23 AHV94271.1 - 0.72 9.7 6.8 3.2 7.6 0.0 3.6 4 0 0 4 4 2 0 MerR family regulatory protein ABC_tran PF00005.27 AHV94272.1 - 7.9e-26 91.2 0.0 1.2e-25 90.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.8 AHV94272.1 - 2.9e-10 39.8 0.1 5.7e-10 38.9 0.1 1.5 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_29 PF13555.6 AHV94272.1 - 0.00036 20.2 0.0 0.00066 19.4 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 AHV94272.1 - 0.00044 20.8 0.0 0.00063 20.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 AHV94272.1 - 0.00047 19.6 0.0 0.00071 19.1 0.0 1.2 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 AHV94272.1 - 0.00068 19.6 0.0 0.0011 18.9 0.0 1.2 1 0 0 1 1 1 1 RsgA GTPase AAA_21 PF13304.6 AHV94272.1 - 0.0014 18.5 1.2 0.052 13.4 0.3 2.2 1 1 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_27 PF13514.6 AHV94272.1 - 0.0029 17.2 0.0 0.0044 16.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 AHV94272.1 - 0.014 15.1 0.0 0.02 14.6 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.6 AHV94272.1 - 0.024 14.4 0.0 0.045 13.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 AHV94272.1 - 0.088 12.1 0.0 0.14 11.5 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin Bax1-I PF01027.20 AHV94273.1 - 2.6e-40 138.5 32.5 3.1e-40 138.2 32.5 1.0 1 0 0 1 1 1 1 Inhibitor of apoptosis-promoting Bax1 DUF4880 PF16220.5 AHV94274.1 - 3.6e-09 36.3 7.8 3.6e-09 36.3 7.8 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF4880) NAD_binding_2 PF03446.15 AHV94275.1 - 3.3e-38 131.4 0.0 5.3e-38 130.7 0.0 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.6 AHV94275.1 - 3.2e-33 114.6 2.3 3.2e-33 114.6 2.3 1.6 2 0 0 2 2 2 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase rve_3 PF13683.6 AHV94277.1 - 4e-26 90.6 0.1 4.7e-26 90.3 0.1 1.1 1 0 0 1 1 1 1 Integrase core domain rve_2 PF13333.6 AHV94277.1 - 5.8e-08 32.8 0.0 7.4e-08 32.5 0.0 1.1 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AHV94277.1 - 0.003 17.8 0.0 0.0035 17.6 0.0 1.1 1 0 0 1 1 1 1 DDE domain FxsA PF04186.13 AHV94278.1 - 0.0032 17.6 8.2 0.036 14.2 8.2 2.1 1 1 0 1 1 1 1 FxsA cytoplasmic membrane protein DUF3394 PF11874.8 AHV94278.1 - 0.011 15.5 0.8 0.017 14.8 0.8 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3394) YiaAB PF05360.14 AHV94278.1 - 0.1 12.9 6.6 0.91 9.8 3.5 3.0 1 1 0 1 1 1 0 yiaA/B two helix domain Phage_integrase PF00589.22 AHV94279.1 - 1e-19 71.0 0.0 2e-19 70.0 0.0 1.4 1 0 0 1 1 1 1 Phage integrase family Aminotran_1_2 PF00155.21 AHV94280.1 - 3.9e-09 36.2 0.0 4.2e-09 36.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 AHV94280.1 - 0.17 10.8 0.0 0.19 10.6 0.0 1.0 1 0 0 1 1 1 0 Aminotransferase class-V Oxidored_q6 PF01058.22 AHV94281.1 - 7.1e-22 77.6 0.1 9.3e-22 77.3 0.1 1.1 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Asp_Arg_Hydrox PF05118.15 AHV94282.1 - 6e-48 162.6 0.0 1e-47 161.9 0.0 1.4 1 0 0 1 1 1 1 Aspartyl/Asparaginyl beta-hydroxylase Cupin_2 PF07883.11 AHV94282.1 - 0.0065 16.2 0.0 0.054 13.2 0.0 2.1 2 0 0 2 2 2 1 Cupin domain IMS PF00817.20 AHV94283.1 - 1.8e-06 28.0 0.0 2.2e-06 27.7 0.0 1.0 1 0 0 1 1 1 1 impB/mucB/samB family Thymidylat_synt PF00303.19 AHV94284.1 - 1e-87 293.7 0.0 1.2e-87 293.5 0.0 1.0 1 0 0 1 1 1 1 Thymidylate synthase Dioxygenase_C PF00775.21 AHV94285.1 - 6.8e-60 201.6 0.0 8.5e-60 201.3 0.0 1.1 1 0 0 1 1 1 1 Dioxygenase Dioxygenase_N PF04444.14 AHV94285.1 - 3.2e-22 78.2 0.0 5.3e-22 77.5 0.0 1.4 1 0 0 1 1 1 1 Catechol dioxygenase N terminus CarboxypepD_reg PF13620.6 AHV94285.1 - 5.9e-06 26.5 0.1 1.6e-05 25.1 0.1 1.8 1 1 0 1 1 1 1 Carboxypeptidase regulatory-like domain Hydrolase_4 PF12146.8 AHV94286.1 - 2.4e-53 180.8 0.0 2.8e-53 180.6 0.0 1.0 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 AHV94286.1 - 5.9e-14 53.2 21.3 9.3e-14 52.5 21.3 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 AHV94286.1 - 2.7e-13 50.2 0.1 1.1e-10 41.6 0.2 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Ser_hydrolase PF06821.13 AHV94286.1 - 0.00083 19.3 0.1 0.034 14.0 0.0 2.6 1 1 1 2 2 2 1 Serine hydrolase DLH PF01738.18 AHV94286.1 - 0.071 12.6 0.0 0.24 10.9 0.0 1.7 2 0 0 2 2 2 0 Dienelactone hydrolase family Thioesterase PF00975.20 AHV94286.1 - 0.11 12.6 0.1 0.18 11.9 0.1 1.3 1 0 0 1 1 1 0 Thioesterase domain DUF4142 PF13628.6 AHV94287.1 - 2.9e-39 134.5 5.9 3.6e-39 134.2 5.9 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4142) DUF305 PF03713.13 AHV94287.1 - 7e-05 23.0 1.3 0.0014 18.8 0.1 2.3 1 1 1 2 2 2 1 Domain of unknown function (DUF305) DUF2383 PF09537.10 AHV94287.1 - 0.00012 22.4 0.6 0.015 15.6 0.0 2.2 1 1 1 2 2 2 2 Domain of unknown function (DUF2383) Glyco_transf_4 PF13439.6 AHV94291.1 - 0.00011 22.2 0.3 0.00025 21.1 0.3 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Jnk-SapK_ap_N PF09744.9 AHV94291.1 - 0.018 15.3 0.3 0.031 14.5 0.3 1.4 1 0 0 1 1 1 0 JNK_SAPK-associated protein-1 FOXP-CC PF16159.5 AHV94291.1 - 0.44 11.2 1.9 23 5.7 0.4 2.6 2 0 0 2 2 2 0 FOXP coiled-coil domain LysM PF01476.20 AHV94292.1 - 0.00034 20.6 0.1 0.00097 19.2 0.1 1.8 1 1 0 1 1 1 1 LysM domain Phage_holin_2_4 PF16082.5 AHV94292.1 - 0.012 15.3 0.1 0.012 15.3 0.1 3.0 2 0 0 2 2 2 0 Bacteriophage holin family, superfamily II-like Multi_Drug_Res PF00893.19 AHV94293.1 - 0.059 14.0 5.7 5.4 7.8 5.6 2.1 1 1 0 1 1 1 0 Small Multidrug Resistance protein DUF4051 PF13260.6 AHV94293.1 - 0.52 10.1 2.7 3 7.6 0.4 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF4051) SBP_bac_3 PF00497.20 AHV94294.1 - 2.4e-10 40.3 0.0 2.7e-10 40.1 0.0 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 DAO PF01266.24 AHV94295.1 - 5.6e-57 193.9 2.8 8.2e-57 193.4 2.8 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase DAO_C PF16901.5 AHV94295.1 - 1.8e-16 60.2 0.2 4.6e-16 58.8 0.2 1.7 1 0 0 1 1 1 1 C-terminal domain of alpha-glycerophosphate oxidase FAD_oxidored PF12831.7 AHV94295.1 - 1.6e-06 27.7 2.8 0.00012 21.6 1.2 2.1 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 AHV94295.1 - 4.9e-06 25.9 8.6 3.4e-05 23.1 2.0 2.9 3 0 0 3 3 3 2 FAD binding domain HI0933_like PF03486.14 AHV94295.1 - 0.00022 20.0 0.2 0.00038 19.3 0.2 1.3 1 0 0 1 1 1 1 HI0933-like protein GIDA PF01134.22 AHV94295.1 - 0.0021 17.2 0.5 0.0021 17.2 0.5 1.6 2 0 0 2 2 2 1 Glucose inhibited division protein A NAD_binding_8 PF13450.6 AHV94295.1 - 0.011 16.0 2.1 0.039 14.2 1.4 2.3 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 AHV94295.1 - 0.011 14.9 1.5 0.013 14.8 0.2 1.6 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 AHV94295.1 - 0.051 12.8 0.6 0.1 11.8 0.2 1.6 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 AHV94295.1 - 0.063 12.5 0.6 0.65 9.2 0.4 2.1 2 0 0 2 2 2 0 FAD binding domain Thi4 PF01946.17 AHV94295.1 - 0.098 11.9 0.7 0.2 10.8 0.0 1.8 2 0 0 2 2 2 0 Thi4 family Trp_halogenase PF04820.14 AHV94295.1 - 0.25 10.1 1.1 0.42 9.4 0.0 1.7 2 0 0 2 2 2 0 Tryptophan halogenase Lycopene_cycl PF05834.12 AHV94295.1 - 1.5 7.8 4.5 1.9 7.5 0.2 2.7 3 0 0 3 3 3 0 Lycopene cyclase protein Hydrolase_3 PF08282.12 AHV94297.1 - 4.1e-11 43.1 0.0 0.00024 20.9 0.0 2.5 2 1 1 3 3 3 2 haloacid dehalogenase-like hydrolase S6PP PF05116.13 AHV94297.1 - 0.0014 18.2 0.0 0.18 11.3 0.0 2.2 2 0 0 2 2 2 2 Sucrose-6F-phosphate phosphohydrolase Hydrolase PF00702.26 AHV94297.1 - 0.13 12.6 0.9 3.9 7.7 0.9 2.5 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase PEPCK_GTP PF00821.18 AHV94299.1 - 1.5e-166 553.6 0.0 2.1e-166 553.1 0.0 1.2 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain PEPCK_N PF17297.2 AHV94299.1 - 7.4e-103 342.8 0.0 1e-102 342.4 0.0 1.2 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxykinase N-terminal domain tRNA_edit PF04073.15 AHV94300.1 - 9.6e-28 96.7 0.0 1.3e-27 96.3 0.0 1.1 1 0 0 1 1 1 1 Aminoacyl-tRNA editing domain MarR_2 PF12802.7 AHV94300.1 - 0.077 12.9 0.0 2.4 8.1 0.0 2.4 2 0 0 2 2 2 0 MarR family HTH_1 PF00126.27 AHV94300.1 - 0.11 12.5 0.0 0.25 11.3 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family ABC_tran PF00005.27 AHV94301.1 - 1e-29 103.8 0.0 1.2e-29 103.6 0.0 1.0 1 0 0 1 1 1 1 ABC transporter AAA_16 PF13191.6 AHV94301.1 - 0.00012 22.6 0.8 0.00015 22.2 0.8 1.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_19 PF13245.6 AHV94301.1 - 0.00017 21.9 0.1 0.00021 21.6 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 AHV94301.1 - 0.00026 20.8 3.6 0.00033 20.4 3.6 1.3 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 AHV94301.1 - 0.00054 19.6 0.2 0.00092 18.9 0.2 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 AHV94301.1 - 0.0055 17.0 0.2 0.013 15.8 0.2 1.7 1 1 0 1 1 1 1 AAA domain AAA_21 PF13304.6 AHV94301.1 - 0.0095 15.8 1.3 0.59 9.9 0.2 2.1 1 1 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system T2SSE PF00437.20 AHV94301.1 - 0.01 15.0 0.3 0.014 14.4 0.3 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein RsgA_GTPase PF03193.16 AHV94301.1 - 0.012 15.5 0.3 0.02 14.8 0.3 1.3 1 0 0 1 1 1 0 RsgA GTPase MMR_HSR1 PF01926.23 AHV94301.1 - 0.017 15.2 0.1 0.022 14.8 0.1 1.3 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_23 PF13476.6 AHV94301.1 - 0.03 14.8 0.2 0.042 14.3 0.2 1.2 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 AHV94301.1 - 0.036 14.3 1.9 0.071 13.4 1.7 1.8 1 1 0 1 1 1 0 AAA domain MobB PF03205.14 AHV94301.1 - 0.039 13.8 0.0 0.066 13.1 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B CbiA PF01656.23 AHV94301.1 - 0.046 13.8 0.0 0.049 13.7 0.0 1.2 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain NACHT PF05729.12 AHV94301.1 - 0.055 13.4 0.2 0.085 12.8 0.2 1.3 1 0 0 1 1 1 0 NACHT domain Zeta_toxin PF06414.12 AHV94301.1 - 0.072 12.4 0.5 0.12 11.6 0.5 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_24 PF13479.6 AHV94301.1 - 0.077 12.7 0.0 0.097 12.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain Pox_A32 PF04665.12 AHV94301.1 - 0.086 12.3 0.1 0.13 11.7 0.1 1.2 1 0 0 1 1 1 0 Poxvirus A32 protein cobW PF02492.19 AHV94301.1 - 0.12 12.0 0.2 0.2 11.2 0.2 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain NB-ARC PF00931.22 AHV94301.1 - 0.13 11.5 0.3 0.2 10.8 0.3 1.2 1 0 0 1 1 1 0 NB-ARC domain PduV-EutP PF10662.9 AHV94301.1 - 0.17 11.6 0.0 0.27 11.0 0.0 1.2 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_25 PF13481.6 AHV94301.1 - 0.18 11.4 0.9 0.27 10.8 0.9 1.4 1 1 0 1 1 1 0 AAA domain PRK PF00485.18 AHV94301.1 - 0.18 11.5 0.0 0.22 11.3 0.0 1.2 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family TsaE PF02367.17 AHV94301.1 - 0.22 11.5 0.3 0.35 10.9 0.3 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ABC_ATPase PF09818.9 AHV94301.1 - 0.26 10.0 0.6 0.51 9.1 0.6 1.5 2 0 0 2 2 2 0 Predicted ATPase of the ABC class MR_MLE_N PF02746.16 AHV94302.1 - 2e-17 63.5 0.1 2.3e-17 63.3 0.1 1.0 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Plug PF07715.15 AHV94303.1 - 2.4e-16 60.3 1.1 3.7e-16 59.6 0.4 1.7 2 0 0 2 2 2 1 TonB-dependent Receptor Plug Domain STN PF07660.14 AHV94303.1 - 2.3e-06 27.3 0.0 7.5e-06 25.7 0.0 1.9 2 0 0 2 2 2 1 Secretin and TonB N terminus short domain DMRL_synthase PF00885.19 AHV94304.1 - 2e-46 157.3 1.9 2.3e-46 157.1 1.9 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase FGGY_C PF02782.16 AHV94305.1 - 2.5e-26 92.6 1.8 5.7e-16 58.8 0.8 2.1 1 1 1 2 2 2 2 FGGY family of carbohydrate kinases, C-terminal domain Lon_C PF05362.13 AHV94306.1 - 1.6e-95 318.5 0.7 3.2e-95 317.5 0.7 1.5 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain LON_substr_bdg PF02190.16 AHV94306.1 - 1.1e-40 139.7 0.8 2.6e-40 138.5 0.0 1.9 2 0 0 2 2 2 1 ATP-dependent protease La (LON) substrate-binding domain AAA PF00004.29 AHV94306.1 - 2.1e-18 67.0 0.0 6.5e-18 65.4 0.0 1.9 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 AHV94306.1 - 6.9e-10 39.1 0.0 1.5e-09 37.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) ChlI PF13541.6 AHV94306.1 - 3.6e-09 36.5 0.0 8.8e-09 35.3 0.0 1.7 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase AAA_PrkA PF08298.11 AHV94306.1 - 2.7e-06 26.6 0.0 4.8e-06 25.7 0.0 1.4 1 0 0 1 1 1 1 PrkA AAA domain AAA_16 PF13191.6 AHV94306.1 - 0.00093 19.6 2.8 0.0016 18.9 0.0 2.7 3 1 0 3 3 3 1 AAA ATPase domain IstB_IS21 PF01695.17 AHV94306.1 - 0.0014 18.3 0.0 0.0031 17.3 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_22 PF13401.6 AHV94306.1 - 0.0018 18.5 0.1 0.028 14.7 0.1 2.7 1 1 0 1 1 1 1 AAA domain RuvB_N PF05496.12 AHV94306.1 - 0.0033 17.2 0.1 0.012 15.4 0.0 1.9 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_3 PF07726.11 AHV94306.1 - 0.0082 16.0 0.0 0.019 14.8 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_2 PF07724.14 AHV94306.1 - 0.0093 16.1 0.0 0.02 15.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_18 PF13238.6 AHV94306.1 - 0.01 16.4 0.0 0.03 14.9 0.0 1.8 1 0 0 1 1 1 0 AAA domain DUF815 PF05673.13 AHV94306.1 - 0.017 14.3 0.0 0.046 12.9 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_14 PF13173.6 AHV94306.1 - 0.022 14.8 0.0 0.053 13.5 0.0 1.7 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 AHV94306.1 - 0.029 14.3 0.1 0.53 10.2 0.0 2.6 3 0 0 3 3 3 0 NACHT domain NB-ARC PF00931.22 AHV94306.1 - 0.047 12.9 0.0 0.13 11.4 0.0 1.7 1 0 0 1 1 1 0 NB-ARC domain RsgA_GTPase PF03193.16 AHV94306.1 - 0.14 12.1 0.0 0.3 11.0 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase MMR_HSR1 PF01926.23 AHV94306.1 - 0.15 12.2 0.0 2 8.5 0.0 2.5 2 0 0 2 2 2 0 50S ribosome-binding GTPase RNA_helicase PF00910.22 AHV94306.1 - 0.15 12.5 0.0 0.36 11.2 0.0 1.7 1 0 0 1 1 1 0 RNA helicase H2O2_YaaD PF03883.14 AHV94307.1 - 1.3e-89 299.7 0.0 1.5e-89 299.5 0.0 1.0 1 0 0 1 1 1 1 Peroxide stress protein YaaA DUF676 PF05057.14 AHV94307.1 - 0.073 12.6 0.0 0.1 12.1 0.0 1.3 1 0 0 1 1 1 0 Putative serine esterase (DUF676) MerR_1 PF13411.6 AHV94308.1 - 5.7e-15 55.2 0.2 1e-14 54.3 0.2 1.4 1 0 0 1 1 1 1 MerR HTH family regulatory protein MerR-DNA-bind PF09278.11 AHV94308.1 - 7.5e-15 55.2 4.5 1.1e-14 54.7 4.5 1.3 1 0 0 1 1 1 1 MerR, DNA binding MerR PF00376.23 AHV94308.1 - 7.8e-12 44.8 0.3 1.5e-11 43.9 0.3 1.5 1 0 0 1 1 1 1 MerR family regulatory protein HTH_11 PF08279.12 AHV94308.1 - 0.0088 16.0 0.1 0.046 13.7 0.0 2.1 2 1 0 2 2 2 1 HTH domain HTH_28 PF13518.6 AHV94308.1 - 0.023 14.8 0.0 0.067 13.3 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain Prefoldin_2 PF01920.20 AHV94308.1 - 0.023 14.6 2.0 0.037 14.0 2.0 1.3 1 0 0 1 1 1 0 Prefoldin subunit Sigma70_r4 PF04545.16 AHV94308.1 - 0.025 14.1 0.7 0.89 9.1 0.0 3.1 3 1 0 3 3 3 0 Sigma-70, region 4 GEMIN8 PF15348.6 AHV94308.1 - 0.034 14.4 0.3 0.034 14.4 0.3 1.1 1 0 0 1 1 1 0 Gemini of Cajal bodies-associated protein 8 HTH_23 PF13384.6 AHV94308.1 - 0.07 12.9 0.8 0.21 11.4 0.0 2.1 2 0 0 2 2 2 0 Homeodomain-like domain FUSC PF04632.12 AHV94308.1 - 0.076 11.5 3.6 0.085 11.4 3.6 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein family Imm2 PF14426.6 AHV94308.1 - 0.1 12.7 0.0 0.16 12.0 0.0 1.3 1 0 0 1 1 1 0 Immunity protein Imm2 Mce4_CUP1 PF11887.8 AHV94308.1 - 0.11 12.0 0.1 0.13 11.7 0.1 1.1 1 0 0 1 1 1 0 Cholesterol uptake porter CUP1 of Mce4, putative PGI PF00342.19 AHV94310.1 - 3.5e-124 415.1 0.0 3.9e-124 414.9 0.0 1.0 1 0 0 1 1 1 1 Phosphoglucose isomerase Big_6 PF17936.1 AHV94311.1 - 6.4e-89 292.3 79.6 2e-13 50.4 3.4 11.4 11 0 0 11 11 11 11 Bacterial Ig domain IAT_beta PF11924.8 AHV94311.1 - 3.1e-61 207.3 0.0 5e-61 206.5 0.0 1.3 1 0 0 1 1 1 1 Inverse autotransporter, beta-domain CarbopepD_reg_2 PF13715.6 AHV94311.1 - 3e-10 40.0 23.0 0.43 10.6 0.1 9.8 10 0 0 10 10 10 5 CarboxypepD_reg-like domain DUF4520 PF15016.6 AHV94311.1 - 2e-08 34.2 0.0 0.25 11.4 0.0 5.2 5 2 0 5 5 5 2 Domain of unknown function (DUF4520) UnbV_ASPIC PF07593.12 AHV94311.1 - 2.7e-08 33.6 5.6 0.67 10.0 0.0 7.2 7 0 0 7 7 7 3 ASPIC and UnbV Rib PF08428.10 AHV94311.1 - 3.2e-06 27.0 24.1 0.12 12.4 0.0 9.0 9 1 1 10 10 10 3 Rib/alpha-like repeat HMA PF00403.26 AHV94311.1 - 0.0019 18.6 11.7 14 6.2 0.1 7.2 8 0 0 8 8 8 1 Heavy-metal-associated domain Tudor_2 PF18104.1 AHV94311.1 - 0.038 13.7 1.4 32 4.3 0.1 4.3 4 0 0 4 4 4 0 Jumonji domain-containing protein 2A Tudor domain FecR PF04773.13 AHV94311.1 - 0.043 14.4 8.7 2.2 9.0 0.1 6.2 7 0 0 7 7 7 0 FecR protein DUF3574 PF12098.8 AHV94311.1 - 0.47 10.3 6.1 7.7 6.4 0.1 4.7 5 0 0 5 5 5 0 Protein of unknown function (DUF3574) rve PF00665.26 AHV94312.1 - 0.0012 19.1 0.0 0.0017 18.5 0.0 1.3 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.6 AHV94312.1 - 0.0017 18.1 0.1 0.0064 16.3 0.1 1.8 1 1 0 1 1 1 1 Integrase core domain LZ_Tnp_IS481 PF13011.6 AHV94313.1 - 2.3e-22 79.3 2.6 4.6e-20 71.9 0.4 2.3 1 1 1 2 2 2 1 leucine-zipper of insertion element IS481 HTH_23 PF13384.6 AHV94313.1 - 2.6e-17 62.1 4.4 6.1e-08 32.2 0.1 2.3 2 0 0 2 2 2 2 Homeodomain-like domain HTH_28 PF13518.6 AHV94313.1 - 1.3e-16 60.4 2.6 2.9e-11 43.3 0.1 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_29 PF13551.6 AHV94313.1 - 3.9e-12 46.0 0.6 1.3e-06 28.3 0.0 2.3 2 0 0 2 2 2 2 Winged helix-turn helix HTH_32 PF13565.6 AHV94313.1 - 2.3e-11 44.1 0.7 4.3e-11 43.3 0.7 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_38 PF13936.6 AHV94313.1 - 2.1e-06 27.4 1.8 4.5e-06 26.3 1.1 1.9 2 1 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 AHV94313.1 - 4.2e-06 26.5 3.4 5e-05 23.1 1.2 2.3 2 0 0 2 2 2 1 MarR family HTH_Tnp_ISL3 PF13542.6 AHV94313.1 - 5.9e-06 25.6 1.9 0.0011 18.4 0.6 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 Sigma70_r4_2 PF08281.12 AHV94313.1 - 1.2e-05 24.9 0.1 0.0035 17.0 0.3 2.3 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 AHV94313.1 - 2.3e-05 23.8 0.1 0.00031 20.2 0.2 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 YdaS_antitoxin PF15943.5 AHV94313.1 - 9.9e-05 22.1 0.3 0.13 12.1 0.0 2.6 2 0 0 2 2 2 2 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_24 PF13412.6 AHV94313.1 - 0.00012 21.5 0.2 0.0012 18.4 0.3 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_3 PF01381.22 AHV94313.1 - 0.00013 22.0 0.7 0.0076 16.3 0.3 2.4 2 0 0 2 2 2 1 Helix-turn-helix HTH_Crp_2 PF13545.6 AHV94313.1 - 0.0002 21.3 0.4 0.0015 18.5 0.2 2.2 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_31 PF13560.6 AHV94313.1 - 0.00027 21.2 6.9 0.0014 18.9 2.8 2.9 2 2 0 2 2 2 1 Helix-turn-helix domain Trp_repressor PF01371.19 AHV94313.1 - 0.00036 20.6 0.2 0.0033 17.5 0.1 2.0 2 0 0 2 2 2 1 Trp repressor protein LacI PF00356.21 AHV94313.1 - 0.00049 19.8 1.2 0.0027 17.5 0.7 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family CENP-B_N PF04218.13 AHV94313.1 - 0.00051 19.6 0.0 0.88 9.2 0.1 2.3 2 0 0 2 2 2 2 CENP-B N-terminal DNA-binding domain HTH_5 PF01022.20 AHV94313.1 - 0.00067 19.5 0.0 0.5 10.3 0.0 2.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.19 AHV94313.1 - 0.00069 19.8 0.0 0.018 15.2 0.0 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain SpoIIID PF12116.8 AHV94313.1 - 0.00094 19.2 0.0 0.54 10.4 0.0 2.2 2 0 0 2 2 2 1 Stage III sporulation protein D HTH_IclR PF09339.10 AHV94313.1 - 0.00099 18.9 1.6 0.019 14.7 0.7 2.5 2 0 0 2 2 2 1 IclR helix-turn-helix domain RepB PF07506.11 AHV94313.1 - 0.0011 19.1 0.2 0.21 11.6 0.1 2.3 1 1 1 2 2 2 1 RepB plasmid partitioning protein HTH_11 PF08279.12 AHV94313.1 - 0.0014 18.5 0.5 0.008 16.1 0.5 2.1 2 0 0 2 2 2 1 HTH domain HTH_psq PF05225.16 AHV94313.1 - 0.0016 18.1 0.5 1.3 8.8 0.5 2.3 2 0 0 2 2 2 1 helix-turn-helix, Psq domain GntR PF00392.21 AHV94313.1 - 0.0021 17.6 0.8 0.28 10.8 0.4 2.4 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_AsnC-type PF13404.6 AHV94313.1 - 0.0023 17.7 3.1 0.03 14.2 1.4 2.6 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_Tnp_1 PF01527.20 AHV94313.1 - 0.0025 18.1 0.4 0.052 13.9 0.0 2.2 1 1 1 2 2 2 1 Transposase HTH_17 PF12728.7 AHV94313.1 - 0.003 17.7 0.1 3.5 7.9 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_10 PF04967.12 AHV94313.1 - 0.0047 16.7 0.1 0.028 14.2 0.2 2.0 2 0 0 2 2 2 1 HTH DNA binding domain HTH_35 PF13693.6 AHV94313.1 - 0.0051 16.8 0.9 0.038 14.0 0.6 2.2 1 1 1 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_30 PF13556.6 AHV94313.1 - 0.0058 16.4 0.1 0.97 9.3 0.0 2.3 2 0 0 2 2 2 1 PucR C-terminal helix-turn-helix domain UPF0175 PF03683.13 AHV94313.1 - 0.0061 16.2 0.4 0.052 13.3 0.1 2.2 2 1 1 3 3 2 1 Uncharacterised protein family (UPF0175) HTH_37 PF13744.6 AHV94313.1 - 0.0076 16.2 0.1 0.065 13.2 0.1 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Tnp_4 PF13613.6 AHV94313.1 - 0.0098 15.6 0.1 0.038 13.7 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix of DDE superfamily endonuclease Crp PF00325.20 AHV94313.1 - 0.015 15.0 1.5 0.036 13.7 0.5 2.1 2 0 0 2 2 2 0 Bacterial regulatory proteins, crp family HTH_36 PF13730.6 AHV94313.1 - 0.016 15.1 0.0 0.32 11.0 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain MerR PF00376.23 AHV94313.1 - 0.017 14.9 1.3 1.9 8.3 0.0 2.8 3 0 0 3 3 2 0 MerR family regulatory protein MarR PF01047.22 AHV94313.1 - 0.02 14.8 0.1 0.08 12.9 0.1 2.0 2 0 0 2 2 2 0 MarR family P22_Cro PF14549.6 AHV94313.1 - 0.027 14.3 2.0 5.1 7.0 0.1 2.3 2 0 0 2 2 2 0 DNA-binding transcriptional regulator Cro DUF746 PF05344.11 AHV94313.1 - 0.036 13.9 0.1 0.54 10.1 0.0 2.2 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) HTH_1 PF00126.27 AHV94313.1 - 0.046 13.7 3.0 2.7 8.0 0.5 2.4 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_DeoR PF08220.12 AHV94313.1 - 0.054 13.3 0.1 5.6 6.8 0.0 2.2 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain Glyc_hyd_38C_2 PF18230.1 AHV94313.1 - 0.059 13.5 0.0 0.63 10.2 0.0 2.1 2 0 0 2 2 2 0 Glycosyl hydrolases family 38 C-terminal sub-domain HTH_Tnp_Tc3_2 PF01498.18 AHV94313.1 - 0.076 13.3 1.5 0.24 11.7 0.1 2.5 2 0 0 2 2 2 0 Transposase Sigma54_DBD PF04552.13 AHV94313.1 - 0.09 12.5 0.1 0.16 11.7 0.1 1.4 1 0 0 1 1 1 0 Sigma-54, DNA binding domain HTH_8 PF02954.19 AHV94313.1 - 0.098 12.5 0.9 8.2 6.3 0.8 2.3 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family TrmB PF01978.19 AHV94313.1 - 0.11 12.3 0.0 0.34 10.8 0.1 1.7 2 0 0 2 2 1 0 Sugar-specific transcriptional regulator TrmB HTH_7 PF02796.15 AHV94313.1 - 0.12 12.5 0.4 0.28 11.3 0.1 1.7 2 0 0 2 2 1 0 Helix-turn-helix domain of resolvase DUF1804 PF08822.11 AHV94313.1 - 0.13 12.2 0.2 10 6.1 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1804) HTH_26 PF13443.6 AHV94313.1 - 0.19 12.2 0.0 2 8.9 0.1 2.1 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain DUF977 PF06163.11 AHV94313.1 - 0.2 11.6 0.6 11 6.0 0.1 2.3 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF977) MerR_1 PF13411.6 AHV94313.1 - 0.23 11.6 0.9 1.4 9.1 0.0 2.3 3 0 0 3 3 2 0 MerR HTH family regulatory protein OpuAC PF04069.12 AHV94314.1 - 5.2e-59 199.9 0.0 6.1e-59 199.7 0.0 1.0 1 0 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system HATPase_c PF02518.26 AHV94315.1 - 7.4e-23 81.2 0.0 1.2e-22 80.6 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 AHV94315.1 - 4.2e-20 71.6 0.5 4.2e-20 71.6 0.5 2.3 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PhoR PF11808.8 AHV94315.1 - 1.5e-14 54.2 8.0 3.1e-14 53.2 8.0 1.5 1 0 0 1 1 1 1 Phosphate regulon sensor protein PhoR PAS_8 PF13188.7 AHV94315.1 - 0.0026 17.8 0.0 0.0068 16.4 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 AHV94315.1 - 0.0057 16.7 0.0 0.032 14.2 0.0 2.1 2 0 0 2 2 2 1 PAS fold HATPase_c_3 PF13589.6 AHV94315.1 - 0.0068 16.2 0.0 0.013 15.3 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 AHV94315.1 - 0.0079 16.2 0.0 0.018 15.0 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_4 PF08448.10 AHV94315.1 - 0.0088 16.3 1.7 0.24 11.7 0.0 3.6 2 2 1 3 3 3 1 PAS fold FecCD PF01032.18 AHV94317.1 - 0.0026 16.8 0.2 0.0032 16.5 0.2 1.2 1 0 0 1 1 1 1 FecCD transport family Cytochrom_C PF00034.21 AHV94318.1 - 5.3e-06 27.5 0.0 6.3e-06 27.2 0.0 1.1 1 0 0 1 1 1 1 Cytochrome c Cytochrome_CBB3 PF13442.6 AHV94318.1 - 2.5e-05 24.5 0.1 2.9e-05 24.3 0.1 1.1 1 0 0 1 1 1 1 Cytochrome C oxidase, cbb3-type, subunit III IMPDH PF00478.25 AHV94319.1 - 6.2e-165 548.3 7.0 7e-165 548.1 7.0 1.0 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain CBS PF00571.28 AHV94319.1 - 4.4e-18 65.5 4.2 3.6e-11 43.3 0.3 3.3 4 0 0 4 4 4 2 CBS domain NMO PF03060.15 AHV94319.1 - 3.3e-12 46.5 15.5 2.8e-06 26.9 12.4 2.5 2 1 0 2 2 2 2 Nitronate monooxygenase FMN_dh PF01070.18 AHV94319.1 - 6.3e-08 32.0 9.4 6.3e-08 32.0 9.4 2.9 2 1 1 3 3 3 1 FMN-dependent dehydrogenase His_biosynth PF00977.21 AHV94319.1 - 0.00014 21.4 5.6 0.088 12.3 0.1 3.1 2 1 1 3 3 3 2 Histidine biosynthesis protein TMP-TENI PF02581.17 AHV94319.1 - 0.0051 16.2 7.5 0.21 10.9 2.2 2.4 1 1 1 2 2 2 2 Thiamine monophosphate synthase Dus PF01207.17 AHV94319.1 - 0.0067 15.6 2.7 0.78 8.8 0.7 2.2 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) QRPTase_C PF01729.19 AHV94319.1 - 0.036 13.8 0.1 0.079 12.7 0.1 1.6 1 0 0 1 1 1 0 Quinolinate phosphoribosyl transferase, C-terminal domain Glu_synthase PF01645.17 AHV94319.1 - 0.073 12.2 11.8 0.011 14.9 7.2 1.9 1 1 1 2 2 2 0 Conserved region in glutamate synthase DHO_dh PF01180.21 AHV94319.1 - 0.32 10.1 5.5 1.3 8.2 0.9 2.4 1 1 1 2 2 2 0 Dihydroorotate dehydrogenase ThiG PF05690.14 AHV94319.1 - 4.3 6.6 9.6 1.1 8.5 2.7 2.5 1 1 2 3 3 3 0 Thiazole biosynthesis protein ThiG SIS PF01380.22 AHV94320.1 - 1.5e-55 186.6 0.4 2.4e-27 95.4 0.3 2.5 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.6 AHV94320.1 - 5.5e-21 75.2 0.1 1.2e-20 74.1 0.1 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 AHV94320.1 - 6.3e-17 61.6 0.0 1.3e-16 60.7 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.6 AHV94320.1 - 2e-05 23.6 0.1 4.4e-05 22.5 0.0 1.6 2 0 0 2 2 2 1 Glutamine amidotransferases class-II SIS_2 PF13580.6 AHV94320.1 - 0.027 14.5 0.0 0.69 9.9 0.0 2.6 2 0 0 2 2 2 0 SIS domain Arabinose_bd PF12625.7 AHV94321.1 - 3.4e-23 82.7 2.3 3.4e-23 82.7 2.3 2.1 2 0 0 2 2 2 1 Arabinose-binding domain of AraC transcription regulator, N-term HTH_18 PF12833.7 AHV94321.1 - 1.5e-19 70.0 1.9 4.5e-19 68.5 1.9 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 AHV94321.1 - 3.1e-14 52.6 0.5 2e-08 34.1 0.1 3.2 3 0 0 3 3 3 2 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_8 PF02954.19 AHV94321.1 - 0.00088 19.0 0.0 0.0027 17.5 0.0 1.9 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family HTH_AsnC-type PF13404.6 AHV94321.1 - 0.0017 18.2 0.1 0.067 13.0 0.1 2.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 AHV94321.1 - 0.0017 17.7 0.3 0.019 14.4 0.0 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 HTH_26 PF13443.6 AHV94321.1 - 0.002 18.5 0.0 0.17 12.4 0.0 3.3 4 0 0 4 4 4 1 Cro/C1-type HTH DNA-binding domain SurA_N PF09312.11 AHV94321.1 - 0.0037 17.3 0.2 0.0068 16.5 0.2 1.5 1 0 0 1 1 1 1 SurA N-terminal domain HTH_24 PF13412.6 AHV94321.1 - 0.0083 15.7 0.0 0.031 13.8 0.1 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.6 AHV94321.1 - 0.016 15.0 0.3 0.85 9.5 0.0 2.7 2 0 0 2 2 2 0 Homeodomain-like domain HTH_28 PF13518.6 AHV94321.1 - 0.025 14.7 0.2 0.47 10.6 0.0 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain SatD PF16264.5 AHV94321.1 - 0.14 11.8 0.0 0.21 11.2 0.0 1.2 1 0 0 1 1 1 0 SatD family (SatD) HTH_10 PF04967.12 AHV94321.1 - 0.14 11.9 0.5 1.2 9.0 0.0 2.7 3 0 0 3 3 3 0 HTH DNA binding domain HU-CCDC81_bac_2 PF18175.1 AHV94321.1 - 0.15 12.0 0.0 0.24 11.3 0.0 1.4 1 0 0 1 1 1 0 CCDC81-like prokaryotic HU domain 2 Proton_antipo_M PF00361.20 AHV94322.1 - 8.7e-62 209.0 19.2 8.7e-62 209.0 19.2 2.1 2 0 0 2 2 2 1 Proton-conducting membrane transporter MnhB PF04039.13 AHV94322.1 - 1.7e-32 112.3 11.3 1.7e-32 112.3 11.3 7.0 3 2 4 9 9 9 1 Domain related to MnhB subunit of Na+/H+ antiporter DUF4040 PF13244.6 AHV94322.1 - 5.7e-19 68.0 4.0 5.7e-19 68.0 4.0 5.5 5 0 0 5 5 5 1 Domain of unknown function (DUF4040) Proton_antipo_N PF00662.20 AHV94322.1 - 6.3e-08 32.6 0.3 6.3e-08 32.6 0.3 3.2 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Proton_antipo_C PF01010.19 AHV94322.1 - 0.04 13.6 0.1 0.071 12.7 0.1 1.3 1 0 0 1 1 1 0 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus Aminotran_4 PF01063.19 AHV94323.1 - 4.8e-43 147.6 0.0 5.6e-43 147.4 0.0 1.0 1 0 0 1 1 1 1 Amino-transferase class IV PsiF_repeat PF07769.14 AHV94324.1 - 1.9e-32 110.8 18.2 1.5e-17 63.2 5.0 2.2 2 0 0 2 2 2 2 psiF repeat Pollen_allerg_2 PF01620.16 AHV94324.1 - 0.0043 17.3 5.0 0.021 15.1 1.5 2.1 1 1 1 2 2 2 2 Ribonuclease (pollen allergen) PALP PF00291.25 AHV94325.1 - 5e-48 164.0 1.6 6.5e-48 163.6 1.6 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Cys_Met_Meta_PP PF01053.20 AHV94326.1 - 8.4e-139 462.3 0.0 9.5e-139 462.2 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.21 AHV94326.1 - 1.4e-09 37.6 0.0 3.1e-09 36.5 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 AHV94326.1 - 1.6e-09 37.6 0.0 2.5e-09 36.9 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 AHV94326.1 - 2.6e-07 30.0 0.0 4e-07 29.3 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V GDC-P PF02347.16 AHV94326.1 - 0.014 14.3 0.0 0.02 13.7 0.0 1.2 1 0 0 1 1 1 0 Glycine cleavage system P-protein Beta_elim_lyase PF01212.21 AHV94326.1 - 0.034 13.4 0.0 0.18 11.1 0.0 2.0 1 1 0 1 1 1 0 Beta-eliminating lyase LysR_substrate PF03466.20 AHV94327.1 - 2.7e-37 128.2 3.6 2.7e-37 128.2 3.6 1.9 1 1 1 2 2 2 1 LysR substrate binding domain HTH_1 PF00126.27 AHV94327.1 - 9e-19 67.2 0.2 1.8e-18 66.2 0.2 1.6 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family PBP_like PF12727.7 AHV94327.1 - 0.00011 21.4 0.0 0.00097 18.3 0.0 2.1 1 1 0 1 1 1 1 PBP superfamily domain MarR PF01047.22 AHV94327.1 - 0.0062 16.4 0.1 0.24 11.4 0.0 3.0 3 0 0 3 3 3 1 MarR family HTH_Tnp_ISL3 PF13542.6 AHV94327.1 - 0.0089 15.4 0.0 0.13 11.7 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 MarR_2 PF12802.7 AHV94327.1 - 0.026 14.4 0.1 1 9.3 0.0 2.6 2 0 0 2 2 2 0 MarR family HTH_50 PF18024.1 AHV94327.1 - 0.028 14.0 0.1 0.14 11.8 0.0 2.3 1 1 1 2 2 2 0 Helix-turn-helix domain HTH_30 PF13556.6 AHV94327.1 - 0.076 12.8 0.0 0.16 11.8 0.0 1.5 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_28 PF13518.6 AHV94327.1 - 0.34 11.1 3.0 0.47 10.6 0.1 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain HlyD_3 PF13437.6 AHV94328.1 - 2.9e-20 72.9 2.2 9.8e-16 58.4 0.4 2.6 2 0 0 2 2 2 2 HlyD family secretion protein HlyD_D23 PF16576.5 AHV94328.1 - 6.9e-13 48.3 4.6 1.2e-11 44.2 4.6 2.2 1 1 0 1 1 1 1 Barrel-sandwich domain of CusB or HlyD membrane-fusion HlyD PF00529.20 AHV94328.1 - 2.8e-09 36.7 0.3 4.7e-09 36.0 0.3 1.4 1 0 0 1 1 1 1 HlyD membrane-fusion protein of T1SS Biotin_lipoyl_2 PF13533.6 AHV94328.1 - 1.3e-05 24.9 2.2 7.5e-05 22.5 0.3 2.9 2 0 0 2 2 2 1 Biotin-lipoyl like Biotin_lipoyl PF00364.22 AHV94328.1 - 9.7e-05 22.1 0.0 0.0052 16.6 0.0 2.6 2 0 0 2 2 2 1 Biotin-requiring enzyme RnfC_N PF13375.6 AHV94328.1 - 0.0036 17.2 0.0 6.6 6.8 0.1 3.1 3 0 0 3 3 3 2 RnfC Barrel sandwich hybrid domain Peptidase_M23 PF01551.22 AHV94328.1 - 0.0095 16.1 0.1 2.7 8.2 0.0 2.7 2 0 0 2 2 2 1 Peptidase family M23 PTS_EIIA_1 PF00358.20 AHV94328.1 - 0.056 13.2 0.0 4.3 7.1 0.0 2.4 2 0 0 2 2 2 0 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NQRA PF05896.11 AHV94328.1 - 0.082 12.3 0.0 0.18 11.2 0.0 1.6 1 0 0 1 1 1 0 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) Remorin_C PF03763.13 AHV94328.1 - 1.7 8.5 5.3 4.7 7.1 0.5 2.4 2 0 0 2 2 2 0 Remorin, C-terminal region HrpB7 PF09486.10 AHV94328.1 - 6.3 7.2 25.8 0.24 11.8 4.5 3.2 1 1 1 3 3 3 0 Bacterial type III secretion protein (HrpB7) Metallophos PF00149.28 AHV94329.1 - 2.4e-09 38.0 0.1 5.8e-09 36.7 0.1 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 AHV94329.1 - 5.1e-07 30.0 0.0 9.9e-07 29.1 0.0 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.6 AHV94329.1 - 0.083 12.2 0.0 0.12 11.6 0.0 1.2 1 0 0 1 1 1 0 Metallophosphoesterase, calcineurin superfamily Abhydrolase_1 PF00561.20 AHV94330.1 - 2.5e-17 63.4 0.4 3.3e-12 46.6 0.2 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 AHV94330.1 - 6e-14 53.2 7.4 9e-14 52.6 7.4 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 AHV94330.1 - 2.1e-11 43.6 0.2 1e-09 38.0 0.1 2.1 2 0 0 2 2 2 2 Serine aminopeptidase, S33 Thioesterase PF00975.20 AHV94330.1 - 0.00018 21.7 0.1 0.00029 21.0 0.1 1.5 1 0 0 1 1 1 1 Thioesterase domain Lipase_3 PF01764.25 AHV94330.1 - 0.03 14.2 0.0 0.046 13.6 0.0 1.2 1 0 0 1 1 1 0 Lipase (class 3) Oxygenase-NA PF09859.9 AHV94331.1 - 4e-77 257.6 0.0 5.5e-77 257.2 0.0 1.2 1 0 0 1 1 1 1 Oxygenase, catalysing oxidative methylation of damaged DNA GreA_GreB_N PF03449.15 AHV94332.1 - 3.8e-25 87.8 0.0 5.9e-25 87.2 0.0 1.3 1 0 0 1 1 1 1 Transcription elongation factor, N-terminal GreA_GreB PF01272.19 AHV94332.1 - 8e-24 83.4 0.0 1.4e-23 82.6 0.0 1.4 1 0 0 1 1 1 1 Transcription elongation factor, GreA/GreB, C-term GHMP_kinases_N PF00288.26 AHV94333.1 - 9.9e-10 38.5 0.1 2.5e-09 37.3 0.1 1.7 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 AHV94333.1 - 1.5e-07 31.7 0.0 3.7e-07 30.4 0.0 1.6 1 0 0 1 1 1 1 GHMP kinases C terminal Entericidin PF08085.11 AHV94333.1 - 0.19 11.8 3.0 2.4 8.3 0.2 2.7 2 0 0 2 2 2 0 Entericidin EcnA/B family ThiF PF00899.21 AHV94334.1 - 3.2e-35 121.6 0.1 5.3e-35 120.9 0.1 1.3 1 1 0 1 1 1 1 ThiF family NAD_binding_7 PF13241.6 AHV94334.1 - 0.021 15.3 0.5 0.068 13.6 0.2 1.9 2 0 0 2 2 2 0 Putative NAD(P)-binding TctC PF03401.14 AHV94335.1 - 1.4e-69 234.2 0.0 1.9e-69 233.8 0.0 1.2 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor SBP_bac_3 PF00497.20 AHV94335.1 - 0.044 13.2 0.0 1.3 8.4 0.0 2.4 1 1 1 2 2 2 0 Bacterial extracellular solute-binding proteins, family 3 Acyl-CoA_dh_1 PF00441.24 AHV94336.1 - 6.8e-51 172.4 5.6 1.1e-50 171.7 5.6 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 AHV94336.1 - 7.2e-26 91.1 1.1 2.1e-25 89.6 0.0 2.2 2 1 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.11 AHV94336.1 - 7.4e-23 81.3 3.1 1.3e-22 80.6 3.1 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 AHV94336.1 - 9.4e-23 80.2 0.0 2.4e-22 78.9 0.0 1.7 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, middle domain Metallophos PF00149.28 AHV94337.1 - 3.5e-11 44.0 0.1 5.9e-11 43.2 0.1 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 AHV94337.1 - 7e-07 29.6 5.3 2e-06 28.1 5.3 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Antibiotic_NAT PF02522.14 AHV94337.1 - 0.1 12.4 0.0 0.19 11.5 0.0 1.3 1 0 0 1 1 1 0 Aminoglycoside 3-N-acetyltransferase SelA PF03841.13 AHV94337.1 - 0.23 10.4 0.0 1.3 8.0 0.1 1.8 2 0 0 2 2 2 0 L-seryl-tRNA selenium transferase MOSC_N PF03476.16 AHV94338.1 - 1.4e-30 105.6 0.0 2.3e-30 104.9 0.0 1.3 1 0 0 1 1 1 1 MOSC N-terminal beta barrel domain MOSC PF03473.17 AHV94338.1 - 1.3e-25 89.9 0.0 3.9e-25 88.4 0.0 1.7 1 1 1 2 2 2 1 MOSC domain rve PF00665.26 AHV94339.1 - 2.9e-32 111.3 0.7 4.3e-32 110.8 0.1 1.6 2 0 0 2 2 1 1 Integrase core domain LZ_Tnp_IS481 PF13011.6 AHV94339.1 - 7.7e-22 77.6 2.7 1.1e-19 70.7 0.4 2.6 1 1 1 2 2 2 1 leucine-zipper of insertion element IS481 rve_3 PF13683.6 AHV94339.1 - 5e-19 67.8 2.7 1.2e-18 66.6 2.7 1.7 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.6 AHV94339.1 - 6.1e-17 60.9 4.4 1.2e-07 31.3 0.1 2.7 2 0 0 2 2 2 2 Homeodomain-like domain HTH_28 PF13518.6 AHV94339.1 - 1.5e-15 57.1 6.5 5.9e-11 42.3 0.1 3.4 4 0 0 4 4 3 2 Helix-turn-helix domain HTH_29 PF13551.6 AHV94339.1 - 9.8e-12 44.7 0.6 2.6e-06 27.4 0.0 2.6 2 0 0 2 2 2 2 Winged helix-turn helix HTH_32 PF13565.6 AHV94339.1 - 9.4e-11 42.2 0.7 9.4e-11 42.2 0.7 2.4 2 1 0 2 2 2 1 Homeodomain-like domain HTH_38 PF13936.6 AHV94339.1 - 1.5e-06 27.9 0.6 5.1e-06 26.1 0.5 2.1 2 0 0 2 2 1 1 Helix-turn-helix domain MarR_2 PF12802.7 AHV94339.1 - 8e-06 25.6 3.1 9.5e-05 22.2 1.2 2.6 2 0 0 2 2 2 1 MarR family HTH_31 PF13560.6 AHV94339.1 - 1.4e-05 25.4 1.7 0.00059 20.1 0.4 3.2 3 0 0 3 3 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 AHV94339.1 - 3e-05 23.6 0.1 0.0064 16.1 0.3 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 AHV94339.1 - 4.6e-05 22.9 0.1 0.00056 19.4 0.2 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 YdaS_antitoxin PF15943.5 AHV94339.1 - 0.00022 21.0 0.2 0.24 11.3 0.0 2.8 2 0 0 2 2 2 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_Tnp_ISL3 PF13542.6 AHV94339.1 - 0.00023 20.5 8.5 0.002 17.5 0.6 3.9 4 0 0 4 4 3 1 Helix-turn-helix domain of transposase family ISL3 HTH_24 PF13412.6 AHV94339.1 - 0.00028 20.4 0.2 0.0021 17.6 0.3 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_3 PF01381.22 AHV94339.1 - 0.00032 20.7 0.7 0.013 15.5 0.3 2.5 2 0 0 2 2 2 1 Helix-turn-helix HTH_Crp_2 PF13545.6 AHV94339.1 - 0.0004 20.3 0.3 0.0027 17.6 0.2 2.3 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain Trp_repressor PF01371.19 AHV94339.1 - 0.00081 19.5 0.2 0.006 16.7 0.1 2.2 2 0 0 2 2 2 1 Trp repressor protein CENP-B_N PF04218.13 AHV94339.1 - 0.0016 18.0 0.0 1.6 8.5 0.1 2.3 2 0 0 2 2 2 1 CENP-B N-terminal DNA-binding domain LacI PF00356.21 AHV94339.1 - 0.0017 18.1 1.8 0.0046 16.7 0.7 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family Fe_dep_repress PF01325.19 AHV94339.1 - 0.002 18.3 0.0 0.034 14.4 0.1 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.20 AHV94339.1 - 0.0023 17.8 0.0 0.93 9.4 0.0 2.5 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 AHV94339.1 - 0.0025 17.6 1.3 0.035 13.9 0.7 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_psq PF05225.16 AHV94339.1 - 0.0025 17.5 0.7 2.3 8.0 0.4 2.9 3 0 0 3 3 3 1 helix-turn-helix, Psq domain HTH_11 PF08279.12 AHV94339.1 - 0.0026 17.7 0.4 0.015 15.3 0.5 2.2 2 0 0 2 2 2 1 HTH domain SpoIIID PF12116.8 AHV94339.1 - 0.0026 17.8 0.0 1.1 9.4 0.0 2.4 2 0 0 2 2 2 1 Stage III sporulation protein D HTH_AsnC-type PF13404.6 AHV94339.1 - 0.0036 17.1 2.7 0.045 13.6 1.1 2.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain RepB PF07506.11 AHV94339.1 - 0.0042 17.2 0.1 0.55 10.3 0.1 2.3 1 1 1 2 2 2 1 RepB plasmid partitioning protein HTH_17 PF12728.7 AHV94339.1 - 0.0043 17.2 0.7 6.1 7.1 0.0 3.3 3 1 0 3 3 3 0 Helix-turn-helix domain HTH_Tnp_1 PF01527.20 AHV94339.1 - 0.005 17.1 0.5 0.11 12.8 0.0 2.7 1 1 1 2 2 2 1 Transposase GntR PF00392.21 AHV94339.1 - 0.0053 16.4 0.8 0.5 10.1 0.3 2.5 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_10 PF04967.12 AHV94339.1 - 0.0077 16.0 0.1 0.049 13.4 0.2 2.2 2 0 0 2 2 2 1 HTH DNA binding domain HTH_35 PF13693.6 AHV94339.1 - 0.0093 16.0 1.5 0.073 13.1 0.6 2.7 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding UPF0175 PF03683.13 AHV94339.1 - 0.014 15.1 0.4 0.1 12.3 0.1 2.4 2 1 0 2 2 2 0 Uncharacterised protein family (UPF0175) HTH_30 PF13556.6 AHV94339.1 - 0.015 15.1 0.1 2 8.3 0.0 2.6 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain HTH_37 PF13744.6 AHV94339.1 - 0.016 15.2 0.1 0.13 12.3 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Tnp_4 PF13613.6 AHV94339.1 - 0.016 14.9 0.1 0.067 12.9 0.0 2.0 2 0 0 2 2 1 0 Helix-turn-helix of DDE superfamily endonuclease HTH_36 PF13730.6 AHV94339.1 - 0.02 14.8 0.1 0.58 10.2 0.0 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain KORA PF16509.5 AHV94339.1 - 0.034 14.4 0.1 3.6 8.0 0.0 3.0 3 0 0 3 3 3 0 TrfB plasmid transcriptional repressor MarR PF01047.22 AHV94339.1 - 0.045 13.7 0.1 0.14 12.1 0.1 1.8 2 0 0 2 2 1 0 MarR family DDE_Tnp_IS240 PF13610.6 AHV94339.1 - 0.048 13.9 0.1 0.071 13.3 0.1 1.3 1 0 0 1 1 1 0 DDE domain Crp PF00325.20 AHV94339.1 - 0.05 13.3 3.2 0.062 13.0 0.5 2.5 3 0 0 3 3 3 0 Bacterial regulatory proteins, crp family P22_Cro PF14549.6 AHV94339.1 - 0.051 13.4 1.6 9.6 6.1 0.1 2.5 2 0 0 2 2 2 0 DNA-binding transcriptional regulator Cro DUF746 PF05344.11 AHV94339.1 - 0.085 12.7 0.1 0.98 9.3 0.0 2.3 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) HTH_1 PF00126.27 AHV94339.1 - 0.1 12.5 2.8 4.7 7.2 0.5 2.6 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_26 PF13443.6 AHV94339.1 - 0.17 12.3 0.0 3.6 8.1 0.1 2.8 3 0 0 3 3 3 0 Cro/C1-type HTH DNA-binding domain HTH_8 PF02954.19 AHV94339.1 - 0.19 11.5 0.9 14 5.5 0.7 2.7 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family HTH_Tnp_Tc3_2 PF01498.18 AHV94339.1 - 0.27 11.5 2.6 0.47 10.7 0.1 2.6 3 0 0 3 3 1 0 Transposase HTH_33 PF13592.6 AHV94339.1 - 0.56 9.9 3.1 2.9 7.6 0.1 3.4 4 0 0 4 4 2 0 Winged helix-turn helix MerR PF00376.23 AHV94339.1 - 0.72 9.7 6.8 3.2 7.6 0.0 3.6 4 0 0 4 4 2 0 MerR family regulatory protein Phenol_MetA_deg PF13557.6 AHV94340.1 - 1e-40 140.2 8.2 1.2e-40 140.0 8.2 1.0 1 0 0 1 1 1 1 Putative MetA-pathway of phenol degradation BPD_transp_2 PF02653.16 AHV94341.1 - 5.5e-38 130.7 32.4 6.8e-38 130.4 32.4 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Ldh_1_N PF00056.23 AHV94342.1 - 8.4e-39 132.9 0.1 1.1e-38 132.4 0.1 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.18 AHV94342.1 - 2.8e-31 108.7 0.0 1.3e-30 106.5 0.0 1.8 2 0 0 2 2 2 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain Glyco_hydro_3_C PF01915.22 AHV94342.1 - 0.029 14.3 0.0 0.041 13.8 0.0 1.3 1 0 0 1 1 1 0 Glycosyl hydrolase family 3 C-terminal domain Polysacc_synt_2 PF02719.15 AHV94342.1 - 0.17 11.0 0.0 0.23 10.5 0.0 1.2 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein HTH_1 PF00126.27 AHV94344.1 - 1.3e-20 73.1 1.0 3.1e-20 71.9 1.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family LysR_substrate PF03466.20 AHV94344.1 - 2e-18 66.6 0.6 3.3e-18 65.8 0.6 1.3 1 0 0 1 1 1 1 LysR substrate binding domain Tautomerase_2 PF14552.6 AHV94344.1 - 0.038 14.1 0.0 0.062 13.4 0.0 1.4 1 0 0 1 1 1 0 Tautomerase enzyme SNARE_assoc PF09335.11 AHV94345.1 - 6e-20 71.9 7.7 6e-20 71.9 7.7 2.3 3 0 0 3 3 3 1 SNARE associated Golgi protein DUF1405 PF07187.11 AHV94345.1 - 0.47 10.5 7.5 19 5.2 7.5 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF1405) DUF3093 PF11292.8 AHV94345.1 - 3.2 8.0 6.6 4.5 7.5 0.9 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF3093) Glyoxalase PF00903.25 AHV94347.1 - 0.031 14.5 0.0 0.038 14.2 0.0 1.2 1 0 0 1 1 1 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 AHV94347.1 - 0.094 13.0 0.0 0.12 12.6 0.0 1.2 1 0 0 1 1 1 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Response_reg PF00072.24 AHV94348.1 - 5.9e-29 100.5 0.0 1e-28 99.7 0.0 1.4 1 0 0 1 1 1 1 Response regulator receiver domain HisKA PF00512.25 AHV94348.1 - 6.1e-09 35.8 0.5 6.1e-09 35.8 0.5 2.5 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain HAMP PF00672.25 AHV94348.1 - 3.4e-05 24.2 0.6 0.00014 22.1 0.2 2.4 2 1 0 2 2 2 1 HAMP domain RasGEF_N_2 PF14663.6 AHV94348.1 - 0.11 12.9 0.0 0.5 10.8 0.0 2.1 2 0 0 2 2 2 0 Rapamycin-insensitive companion of mTOR RasGEF_N domain FlhC PF05280.11 AHV94349.1 - 3.1e-79 264.7 0.0 3.6e-79 264.5 0.0 1.0 1 0 0 1 1 1 1 Flagellar transcriptional activator (FlhC) DUF2970 PF11174.8 AHV94350.1 - 1.8e-23 82.1 5.1 2.5e-23 81.7 5.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2970) Peptidase_M75 PF09375.10 AHV94351.1 - 6.7e-31 107.8 14.5 8.7e-31 107.4 14.5 1.0 1 0 0 1 1 1 1 Imelysin PHP PF02811.19 AHV94352.1 - 6.3e-05 23.3 0.0 7.5e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 PHP domain TonB_2 PF13103.6 AHV94353.1 - 6.7e-14 51.9 0.0 1.4e-13 50.9 0.0 1.6 1 0 0 1 1 1 1 TonB C terminal TonB_C PF03544.14 AHV94353.1 - 6.8e-05 23.2 0.2 0.00037 20.9 0.0 2.4 2 0 0 2 2 2 1 Gram-negative bacterial TonB protein C-terminal Selenoprotein_S PF06936.11 AHV94353.1 - 0.0022 17.8 19.8 0.003 17.4 19.8 1.2 1 0 0 1 1 1 1 Selenoprotein S (SelS) Borrelia_P83 PF05262.11 AHV94353.1 - 0.15 10.5 29.9 0.18 10.3 29.9 1.0 1 0 0 1 1 1 0 Borrelia P83/100 protein Presenilin PF01080.17 AHV94353.1 - 0.18 10.5 11.2 0.19 10.5 11.2 1.1 1 0 0 1 1 1 0 Presenilin CDC27 PF09507.10 AHV94353.1 - 0.84 9.0 25.0 1 8.6 25.0 1.0 1 0 0 1 1 1 0 DNA polymerase subunit Cdc27 SWI-SNF_Ssr4 PF08549.10 AHV94353.1 - 5.6 5.5 15.6 7.2 5.1 15.6 1.0 1 0 0 1 1 1 0 Fungal domain of unknown function (DUF1750) RR_TM4-6 PF06459.12 AHV94353.1 - 6 6.6 23.7 8.5 6.1 23.7 1.2 1 0 0 1 1 1 0 Ryanodine Receptor TM 4-6 AP1AR PF15745.5 AHV94353.1 - 7.5 6.1 23.6 11 5.5 23.6 1.2 1 0 0 1 1 1 0 AP-1 complex-associated regulatory protein YfiO PF13525.6 AHV94355.1 - 5.6e-61 205.8 5.4 5.6e-61 205.8 5.4 1.7 1 1 1 2 2 2 1 Outer membrane lipoprotein TPR_18 PF13512.6 AHV94355.1 - 7e-45 152.7 5.2 3.3e-44 150.5 1.1 2.4 2 1 0 2 2 2 1 Tetratricopeptide repeat TPR_6 PF13174.6 AHV94355.1 - 4.3e-10 39.6 8.1 0.12 13.1 0.1 5.2 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_16 PF13432.6 AHV94355.1 - 6.4e-06 26.7 8.9 0.0021 18.7 2.4 3.1 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_21 PF09976.9 AHV94355.1 - 0.00065 19.5 2.7 0.00096 18.9 0.7 2.1 2 1 0 2 2 2 1 Tetratricopeptide repeat-like domain TPR_14 PF13428.6 AHV94355.1 - 0.00078 20.1 6.2 1 10.3 0.1 4.1 3 1 1 4 4 4 2 Tetratricopeptide repeat ANAPC3 PF12895.7 AHV94355.1 - 0.0014 18.9 0.9 0.34 11.2 0.1 3.1 2 1 1 3 3 3 1 Anaphase-promoting complex, cyclosome, subunit 3 DUF4192 PF13830.6 AHV94355.1 - 0.011 15.8 0.6 0.037 14.1 0.2 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4192) TPR_19 PF14559.6 AHV94355.1 - 0.028 14.9 2.5 0.78 10.3 0.3 3.4 2 1 1 3 3 3 0 Tetratricopeptide repeat HrpB1_HrpK PF09613.10 AHV94355.1 - 0.037 13.7 0.0 1.1 8.9 0.0 2.3 1 1 1 2 2 2 0 Bacterial type III secretion protein (HrpB1_HrpK) TPR_2 PF07719.17 AHV94355.1 - 0.07 13.3 7.1 0.15 12.2 0.5 4.0 4 0 0 4 4 4 0 Tetratricopeptide repeat DUF1993 PF09351.10 AHV94357.1 - 2.6e-39 134.9 0.0 2.9e-39 134.8 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1993) EamA PF00892.20 AHV94358.1 - 1.9e-16 60.5 22.6 4.1e-14 52.9 14.2 2.0 2 0 0 2 2 2 2 EamA-like transporter family SLC35F PF06027.12 AHV94358.1 - 0.00048 19.7 5.7 0.00073 19.1 5.7 1.5 1 1 0 1 1 1 1 Solute carrier family 35 GntR PF00392.21 AHV94359.1 - 3.2e-17 61.9 0.1 6.2e-17 61.0 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family UTRA PF07702.13 AHV94359.1 - 7.3e-10 38.8 0.0 1.4e-09 37.9 0.0 1.5 1 0 0 1 1 1 1 UTRA domain HTH_DeoR PF08220.12 AHV94359.1 - 2.5e-06 27.1 0.0 4.6e-06 26.3 0.0 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_20 PF12840.7 AHV94359.1 - 0.14 12.2 0.2 0.73 9.9 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain MarR PF01047.22 AHV94359.1 - 0.18 11.8 0.0 0.31 11.0 0.0 1.4 1 0 0 1 1 1 0 MarR family Aminotran_1_2 PF00155.21 AHV94360.1 - 2e-39 135.8 0.0 2.4e-39 135.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.7 AHV94360.1 - 1.1e-09 37.6 0.1 1.8e-09 36.9 0.1 1.3 1 0 0 1 1 1 1 Alanine-glyoxylate amino-transferase DegT_DnrJ_EryC1 PF01041.17 AHV94360.1 - 6.2e-06 25.8 0.0 1.1e-05 25.0 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Pept_tRNA_hydro PF01195.19 AHV94361.1 - 7.2e-59 198.6 0.0 8.2e-59 198.4 0.0 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase Response_reg PF00072.24 AHV94362.1 - 5.6e-24 84.5 0.0 1.6e-23 83.0 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain GerE PF00196.19 AHV94362.1 - 3e-20 71.5 0.6 4.8e-20 70.9 0.6 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 AHV94362.1 - 2.6e-06 27.0 0.4 5.8e-06 25.9 0.4 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 SurA_N_3 PF13624.6 AHV94362.1 - 0.00051 19.9 0.3 0.00074 19.3 0.3 1.3 1 0 0 1 1 1 1 SurA N-terminal domain Sigma70_r4 PF04545.16 AHV94362.1 - 0.00083 18.8 0.6 0.00083 18.8 0.6 2.2 2 1 0 2 2 2 1 Sigma-70, region 4 SurA_N PF09312.11 AHV94362.1 - 0.0032 17.5 3.4 0.0057 16.7 3.4 1.4 1 0 0 1 1 1 1 SurA N-terminal domain SurA_N_2 PF13623.6 AHV94362.1 - 0.0048 16.8 1.6 0.0069 16.3 1.6 1.2 1 0 0 1 1 1 1 SurA N-terminal domain SieB PF14163.6 AHV94362.1 - 0.025 14.1 0.4 0.039 13.4 0.4 1.2 1 0 0 1 1 1 0 Super-infection exclusion protein B SBD_N PF07005.11 AHV94362.1 - 0.026 14.3 0.1 0.033 13.9 0.1 1.3 1 0 0 1 1 1 0 Sugar-binding N-terminal domain HTH_23 PF13384.6 AHV94362.1 - 0.044 13.6 1.9 0.14 12.0 0.1 2.5 2 1 0 2 2 2 0 Homeodomain-like domain DUF3071 PF11268.8 AHV94362.1 - 0.049 13.7 1.5 0.073 13.1 1.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3071) TadZ_N PF16968.5 AHV94362.1 - 0.07 12.8 0.0 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 Pilus assembly protein TadZ N-terminal GvpK PF05121.12 AHV94362.1 - 0.22 11.6 3.5 0.19 11.8 0.3 2.1 1 1 1 2 2 2 0 Gas vesicle protein K Arg_decarbox_C PF17944.1 AHV94362.1 - 0.36 11.4 3.1 0.5 11.0 0.6 2.4 2 1 1 3 3 3 0 Arginine decarboxylase C-terminal helical extension COX1 PF00115.20 AHV94363.1 - 2.3e-135 451.8 72.1 2.3e-135 451.8 72.1 2.2 3 0 0 3 3 3 1 Cytochrome C and Quinol oxidase polypeptide I rve_3 PF13683.6 AHV94364.1 - 1.8e-31 107.7 0.0 4.1e-31 106.6 0.0 1.6 2 0 0 2 2 2 1 Integrase core domain rve PF00665.26 AHV94364.1 - 5.6e-24 84.6 0.0 9.5e-24 83.9 0.0 1.3 1 0 0 1 1 1 1 Integrase core domain rve_2 PF13333.6 AHV94364.1 - 7e-07 29.3 0.0 1.2e-06 28.6 0.0 1.3 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AHV94364.1 - 0.00052 20.3 0.0 0.00079 19.7 0.0 1.4 1 0 0 1 1 1 1 DDE domain Dus PF01207.17 AHV94365.1 - 5.6e-72 242.5 0.0 6.8e-72 242.2 0.0 1.1 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) RNase_PH PF01138.21 AHV94366.1 - 8e-20 71.7 0.0 1.3e-19 71.0 0.0 1.3 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 AHV94366.1 - 1.3e-12 47.6 0.2 3.7e-12 46.1 0.1 1.8 2 0 0 2 2 2 1 3' exoribonuclease family, domain 2 HATPase_c PF02518.26 AHV94367.1 - 3.3e-22 79.1 0.0 6.3e-22 78.2 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 AHV94367.1 - 5.5e-06 26.3 2.3 5.3e-05 23.2 0.6 2.4 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.6 AHV94367.1 - 0.00078 19.3 0.0 0.0023 17.8 0.0 1.7 2 0 0 2 2 2 1 GHKL domain HATPase_c_2 PF13581.6 AHV94367.1 - 0.021 14.8 0.0 0.041 13.8 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain Ank_2 PF12796.7 AHV94368.1 - 5.6e-33 113.4 0.0 9e-14 51.8 0.0 3.1 1 1 2 3 3 3 3 Ankyrin repeats (3 copies) Ank_4 PF13637.6 AHV94368.1 - 1.1e-21 76.8 0.0 3.2e-10 40.3 0.0 4.0 2 1 2 4 4 4 4 Ankyrin repeats (many copies) Ank_5 PF13857.6 AHV94368.1 - 4.2e-21 74.7 0.8 2.6e-07 30.8 0.0 4.1 1 1 3 4 4 4 4 Ankyrin repeats (many copies) Ank_3 PF13606.6 AHV94368.1 - 2.8e-19 67.2 0.0 0.00053 20.2 0.0 5.3 5 0 0 5 5 5 3 Ankyrin repeat Ank PF00023.30 AHV94368.1 - 1.1e-16 60.4 0.0 0.00014 22.1 0.0 4.4 3 1 1 4 4 4 3 Ankyrin repeat DUF5560 PF17715.1 AHV94368.1 - 0.0089 15.5 0.7 0.0089 15.5 0.7 1.6 2 0 0 2 2 2 1 Family of unknown function (DUF5560) AzlD PF05437.12 AHV94369.1 - 2e-16 60.0 8.3 2.6e-16 59.6 8.3 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport protein (AzlD) Flg_hook PF02120.16 AHV94370.1 - 3.3e-10 39.7 0.2 5.3e-10 39.0 0.2 1.3 1 0 0 1 1 1 1 Flagellar hook-length control protein FliK DciA PF05258.12 AHV94370.1 - 3.1e-09 37.1 0.7 4.8e-09 36.5 0.7 1.3 1 0 0 1 1 1 1 Dna[CI] antecedent, DciA rve_2 PF13333.6 AHV94371.1 - 6.2e-19 67.9 0.5 6.8e-19 67.8 0.5 1.0 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.6 AHV94371.1 - 9.4e-07 28.5 0.0 1e-06 28.4 0.0 1.1 1 0 0 1 1 1 1 Integrase core domain FCD PF07729.12 AHV94372.1 - 4.9e-25 88.4 8.6 9.9e-25 87.4 8.6 1.5 1 0 0 1 1 1 1 FCD domain GntR PF00392.21 AHV94372.1 - 4.2e-22 77.6 1.2 1.5e-21 75.8 0.2 2.3 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_11 PF08279.12 AHV94372.1 - 2.3e-05 24.3 0.0 5.5e-05 23.0 0.0 1.7 1 0 0 1 1 1 1 HTH domain Rrf2 PF02082.20 AHV94372.1 - 4e-05 23.9 0.0 8.8e-05 22.8 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator MarR_2 PF12802.7 AHV94372.1 - 0.00089 19.1 0.4 0.0037 17.1 0.0 2.1 2 0 0 2 2 2 1 MarR family NBD_C PF17042.5 AHV94372.1 - 0.0033 18.0 0.8 0.0073 16.8 0.3 1.8 1 1 1 2 2 2 1 Nucleotide-binding C-terminal domain Fe_dep_repress PF01325.19 AHV94372.1 - 0.0037 17.4 0.0 0.017 15.3 0.0 1.9 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_24 PF13412.6 AHV94372.1 - 0.0047 16.5 0.0 0.01 15.3 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 AHV94372.1 - 0.0073 16.3 0.1 0.061 13.4 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_41 PF14502.6 AHV94372.1 - 0.017 14.8 0.0 0.032 13.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Crp_2 PF13545.6 AHV94372.1 - 0.017 15.1 0.0 0.035 14.1 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_36 PF13730.6 AHV94372.1 - 0.03 14.3 0.0 0.05 13.6 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_46 PF15977.5 AHV94372.1 - 0.063 13.3 0.0 0.29 11.2 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix DNA binding PaaX PF07848.12 AHV94372.1 - 0.066 13.4 0.1 0.066 13.4 0.1 2.7 4 0 0 4 4 3 0 PaaX-like protein CDC48_2 PF02933.17 AHV94372.1 - 0.069 12.9 0.1 0.18 11.6 0.0 1.6 2 0 0 2 2 2 0 Cell division protein 48 (CDC48), domain 2 HTH_Tnp_4 PF13613.6 AHV94372.1 - 0.092 12.5 0.0 0.2 11.4 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease TrmB PF01978.19 AHV94372.1 - 0.14 12.1 0.0 0.31 10.9 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Formyl_trans_N PF00551.19 AHV94373.1 - 1.3e-41 142.3 0.0 2.2e-41 141.6 0.0 1.4 1 0 0 1 1 1 1 Formyl transferase Formyl_trans_C PF02911.18 AHV94373.1 - 1e-21 77.1 0.0 1.6e-21 76.4 0.0 1.3 1 0 0 1 1 1 1 Formyl transferase, C-terminal domain Glyco_transf_4 PF13439.6 AHV94373.1 - 0.14 12.2 0.4 0.65 10.0 0.1 2.1 3 0 0 3 3 3 0 Glycosyltransferase Family 4 TonB_dep_Rec PF00593.24 AHV94374.1 - 2.4e-53 182.7 31.0 2.4e-53 182.7 31.0 2.2 1 1 1 2 2 2 2 TonB dependent receptor Plug PF07715.15 AHV94374.1 - 3.3e-13 50.2 2.8 9.3e-13 48.7 1.4 2.6 2 0 0 2 2 2 1 TonB-dependent Receptor Plug Domain STN PF07660.14 AHV94374.1 - 3.7e-13 49.0 0.5 2.4e-12 46.5 0.1 2.5 2 0 0 2 2 2 1 Secretin and TonB N terminus short domain Topoisom_bac PF01131.20 AHV94376.1 - 1.2e-112 376.9 0.0 1.2e-112 376.9 0.0 1.7 2 0 0 2 2 2 1 DNA topoisomerase Toprim_Crpt PF13342.6 AHV94376.1 - 1.3e-40 137.1 3.7 5.7e-21 74.2 0.0 2.8 3 0 0 3 3 3 2 C-terminal repeat of topoisomerase Toprim PF01751.22 AHV94376.1 - 7.9e-13 48.5 0.0 2e-12 47.2 0.0 1.7 1 0 0 1 1 1 1 Toprim domain OrfB_Zn_ribbon PF07282.11 AHV94376.1 - 0.0008 19.3 0.5 0.0008 19.3 0.5 2.2 2 0 0 2 2 2 1 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.12 AHV94376.1 - 0.59 9.7 2.0 3.3 7.3 0.1 2.5 2 0 0 2 2 2 0 TFIIB zinc-binding zinc-ribbons_6 PF07191.12 AHV94376.1 - 0.85 9.6 6.0 1.7 8.6 0.5 2.3 2 0 0 2 2 2 0 zinc-ribbons DZR PF12773.7 AHV94376.1 - 1.6 8.8 4.0 2.7 8.1 0.3 2.3 2 0 0 2 2 2 0 Double zinc ribbon Zn-ribbon_8 PF09723.10 AHV94376.1 - 5.3 7.2 5.7 13 6.0 0.1 3.1 3 0 0 3 3 3 0 Zinc ribbon domain Auto_anti-p27 PF06677.12 AHV94376.1 - 5.9 7.1 6.0 13 6.0 1.3 2.4 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) FecR PF04773.13 AHV94377.1 - 5.6e-18 65.4 0.3 1.1e-17 64.5 0.3 1.5 1 0 0 1 1 1 1 FecR protein DUF4880 PF16220.5 AHV94377.1 - 7.6e-15 54.5 13.8 1.8e-14 53.4 13.8 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4880) HTH_47 PF16221.5 AHV94377.1 - 0.037 13.6 0.1 0.077 12.6 0.1 1.5 1 0 0 1 1 1 0 winged helix-turn-helix TPR_14 PF13428.6 AHV94377.1 - 0.8 10.7 4.4 2.5 9.2 0.1 2.9 2 0 0 2 2 2 0 Tetratricopeptide repeat SMC_ScpB PF04079.16 AHV94379.1 - 1.7e-45 154.5 0.0 2.2e-45 154.2 0.0 1.1 1 0 0 1 1 1 1 Segregation and condensation complex subunit ScpB MarR_2 PF12802.7 AHV94379.1 - 0.092 12.6 0.1 0.29 11.0 0.0 1.9 2 0 0 2 2 2 0 MarR family NAT PF04768.13 AHV94379.1 - 0.14 11.8 0.0 0.17 11.6 0.0 1.1 1 0 0 1 1 1 0 NAT, N-acetyltransferase, of N-acetylglutamate synthase ZnuA PF01297.17 AHV94380.1 - 9.3e-78 261.2 0.0 1.1e-77 261.0 0.0 1.0 1 0 0 1 1 1 1 Zinc-uptake complex component A periplasmic Zip PF02535.22 AHV94380.1 - 0.00071 18.9 1.5 0.00086 18.6 1.5 1.2 1 0 0 1 1 1 1 ZIP Zinc transporter CDC45 PF02724.14 AHV94380.1 - 0.22 9.8 1.5 0.28 9.4 1.5 1.1 1 0 0 1 1 1 0 CDC45-like protein NOA36 PF06524.12 AHV94380.1 - 1.3 8.2 7.0 1.9 7.8 7.0 1.2 1 0 0 1 1 1 0 NOA36 protein SelP_N PF04592.14 AHV94380.1 - 7.7 5.8 19.9 12 5.2 19.9 1.3 1 0 0 1 1 1 0 Selenoprotein P, N terminal region Response_reg PF00072.24 AHV94381.1 - 5.3e-28 97.4 0.0 7.6e-28 96.9 0.0 1.2 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 AHV94381.1 - 2.8e-20 72.1 0.3 5.4e-20 71.3 0.1 1.6 2 0 0 2 2 2 1 Transcriptional regulatory protein, C terminal GerE PF00196.19 AHV94381.1 - 0.026 14.1 0.1 9.6 5.8 0.5 2.3 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family FleQ PF06490.11 AHV94381.1 - 0.053 13.9 0.0 0.08 13.3 0.0 1.3 1 0 0 1 1 1 0 Flagellar regulatory protein FleQ SBP_bac_6 PF13343.6 AHV94382.1 - 2.1e-07 30.6 0.0 3.7e-07 29.8 0.0 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 AHV94382.1 - 0.00015 21.6 0.0 0.00061 19.6 0.0 1.9 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein PGM_PMM_I PF02878.16 AHV94383.1 - 2.5e-41 140.6 0.0 4.6e-41 139.8 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_III PF02880.16 AHV94383.1 - 1.9e-26 92.5 0.1 3.2e-26 91.8 0.1 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_II PF02879.16 AHV94383.1 - 1.1e-15 58.1 0.1 2.2e-15 57.1 0.1 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.20 AHV94383.1 - 4.5e-14 52.4 0.1 1.3e-13 50.9 0.1 1.8 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain TPR_6 PF13174.6 AHV94384.1 - 5e-13 48.8 9.6 9.1e-05 22.8 0.0 4.3 4 1 0 4 4 4 3 Tetratricopeptide repeat TPR_16 PF13432.6 AHV94384.1 - 6.8e-12 45.8 4.9 6e-11 42.8 3.7 3.2 3 1 0 3 3 3 2 Tetratricopeptide repeat YfiO PF13525.6 AHV94384.1 - 2e-11 44.0 2.3 2e-11 44.0 2.3 2.2 2 1 0 2 2 2 1 Outer membrane lipoprotein TPR_14 PF13428.6 AHV94384.1 - 7.1e-11 42.0 13.7 0.0037 18.0 0.1 5.1 3 2 2 5 5 5 3 Tetratricopeptide repeat TPR_19 PF14559.6 AHV94384.1 - 1.5e-09 38.2 16.1 1.3e-08 35.2 0.4 3.5 3 1 0 3 3 3 1 Tetratricopeptide repeat TPR_2 PF07719.17 AHV94384.1 - 1.4e-08 34.2 0.3 0.012 15.7 0.0 3.6 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_18 PF13512.6 AHV94384.1 - 3.7e-07 30.4 7.2 1.7e-06 28.2 2.1 2.6 2 1 0 2 2 2 1 Tetratricopeptide repeat TPR_21 PF09976.9 AHV94384.1 - 2.4e-05 24.2 4.8 7.9e-05 22.4 1.7 2.8 2 1 1 3 3 3 2 Tetratricopeptide repeat-like domain TPR_20 PF14561.6 AHV94384.1 - 4.4e-05 23.7 12.3 0.27 11.6 0.0 4.0 2 2 2 4 4 4 3 Tetratricopeptide repeat TPR_9 PF13371.6 AHV94384.1 - 0.00018 21.6 11.9 0.4 10.9 0.1 4.2 3 2 1 4 4 4 3 Tetratricopeptide repeat TPR_11 PF13414.6 AHV94384.1 - 0.0011 18.6 4.4 0.026 14.2 0.1 2.6 1 1 1 2 2 2 1 TPR repeat ANAPC3 PF12895.7 AHV94384.1 - 0.0014 18.9 4.6 0.19 12.0 0.1 3.1 2 1 1 3 3 3 2 Anaphase-promoting complex, cyclosome, subunit 3 Golgin_A5 PF09787.9 AHV94384.1 - 0.023 14.2 7.1 0.033 13.6 7.1 1.2 1 0 0 1 1 1 0 Golgin subfamily A member 5 Fungal_trans_2 PF11951.8 AHV94384.1 - 0.038 12.8 0.4 0.05 12.4 0.4 1.1 1 0 0 1 1 1 0 Fungal specific transcription factor domain Fis1_TPR_C PF14853.6 AHV94384.1 - 0.047 13.8 0.1 0.047 13.8 0.1 3.1 3 0 0 3 3 3 0 Fis1 C-terminal tetratricopeptide repeat MAP7 PF05672.11 AHV94384.1 - 0.05 13.3 5.1 0.07 12.8 5.1 1.2 1 0 0 1 1 1 0 MAP7 (E-MAP-115) family DUF3573 PF12097.8 AHV94384.1 - 0.05 12.4 0.9 0.064 12.1 0.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3573) HR1 PF02185.16 AHV94384.1 - 0.11 12.7 19.0 0.11 12.7 13.5 3.0 3 1 0 3 3 3 0 Hr1 repeat DUF3450 PF11932.8 AHV94384.1 - 0.11 11.8 10.6 0.17 11.2 10.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) DUF5527 PF17665.1 AHV94384.1 - 0.13 11.7 0.4 0.28 10.7 0.4 1.5 1 0 0 1 1 1 0 Family of unknown function (DUF5527) DUF724 PF05266.14 AHV94384.1 - 0.15 11.9 1.9 0.22 11.3 1.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF724) Alkyl_sulf_dimr PF14863.6 AHV94384.1 - 0.21 12.1 5.8 29 5.1 2.3 3.0 2 1 1 3 3 3 0 Alkyl sulfatase dimerisation EzrA PF06160.12 AHV94384.1 - 0.52 8.4 5.0 3 5.9 0.1 2.3 2 0 0 2 2 2 0 Septation ring formation regulator, EzrA TolA_bind_tri PF16331.5 AHV94384.1 - 0.57 10.3 22.5 0.86 9.7 21.1 2.1 2 1 0 2 2 1 0 TolA binding protein trimerisation LapA_dom PF06305.11 AHV94384.1 - 1.7 8.5 6.6 12 5.8 0.1 2.4 2 0 0 2 2 2 0 Lipopolysaccharide assembly protein A domain DUF4140 PF13600.6 AHV94384.1 - 6.3 7.3 11.9 11 6.6 2.1 2.4 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) PilO PF04350.13 AHV94384.1 - 8.1 6.6 9.8 11 6.1 8.6 1.8 2 0 0 2 2 2 0 Pilus assembly protein, PilO Transgly_assoc PF04226.13 AHV94385.1 - 2.1e-16 59.9 12.5 2.1e-16 59.9 12.5 2.2 1 1 1 2 2 2 1 Transglycosylase associated protein DUF5518 PF17647.1 AHV94385.1 - 0.0024 18.0 14.8 0.0035 17.5 14.8 1.2 1 0 0 1 1 1 1 Family of unknown function (DUF5518) FecCD PF01032.18 AHV94385.1 - 0.0063 15.6 8.1 0.0078 15.3 8.1 1.0 1 0 0 1 1 1 1 FecCD transport family SLATT_fungal PF18142.1 AHV94385.1 - 0.01 15.8 4.0 0.01 15.8 4.0 1.3 1 1 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain ECF-ribofla_trS PF07155.12 AHV94385.1 - 0.15 12.0 14.0 2 8.4 14.7 1.9 1 1 0 1 1 1 0 ECF-type riboflavin transporter, S component FeoB_C PF07664.12 AHV94385.1 - 0.17 11.6 11.5 0.14 11.9 0.9 3.0 1 1 2 3 3 3 0 Ferrous iron transport protein B C terminus Vma12 PF11712.8 AHV94385.1 - 0.76 9.8 3.5 1.1 9.3 3.5 1.4 1 1 0 1 1 1 0 Endoplasmic reticulum-based factor for assembly of V-ATPase MFS_1 PF07690.16 AHV94385.1 - 2.1 7.2 17.3 0.71 8.7 12.8 1.9 1 1 0 1 1 1 0 Major Facilitator Superfamily Yip1 PF04893.17 AHV94385.1 - 2.9 7.6 18.7 52 3.5 18.7 2.0 1 1 0 1 1 1 0 Yip1 domain DUF4231 PF14015.6 AHV94385.1 - 6.5 7.3 7.5 44 4.6 7.5 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF4231) LysR_substrate PF03466.20 AHV94386.1 - 1.7e-20 73.3 1.1 1.9e-20 73.2 1.1 1.0 1 0 0 1 1 1 1 LysR substrate binding domain Sigma70_r4 PF04545.16 AHV94387.1 - 7.2e-14 51.0 0.5 8.6e-14 50.8 0.5 1.2 1 0 0 1 1 1 1 Sigma-70, region 4 DUF72 PF01904.18 AHV94388.1 - 1.1e-51 176.1 0.0 1.2e-51 175.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 Dodecin PF07311.12 AHV94389.1 - 2e-29 101.6 0.0 2.2e-29 101.5 0.0 1.0 1 0 0 1 1 1 1 Dodecin GD_AH_C PF04295.13 AHV94390.1 - 4.3e-105 351.7 0.3 4.7e-105 351.6 0.3 1.0 1 0 0 1 1 1 1 D-galactarate dehydratase / Altronate hydrolase, C terminus IstB_IS21 PF01695.17 AHV94391.1 - 5.2e-63 212.0 0.1 6.8e-63 211.6 0.1 1.1 1 0 0 1 1 1 1 IstB-like ATP binding protein Bac_DnaA PF00308.18 AHV94391.1 - 2.5e-07 30.8 0.0 3.4e-07 30.3 0.0 1.1 1 0 0 1 1 1 1 Bacterial dnaA protein AAA PF00004.29 AHV94391.1 - 2.1e-06 28.2 0.0 3.7e-06 27.4 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 AHV94391.1 - 2.8e-06 27.8 0.4 0.00017 22.0 0.4 2.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 AHV94391.1 - 4e-05 23.9 0.0 0.023 15.0 0.0 2.5 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.14 AHV94391.1 - 5.2e-05 23.3 0.0 0.00018 21.5 0.0 1.8 1 1 1 2 2 2 1 AAA domain (dynein-related subfamily) RsgA_GTPase PF03193.16 AHV94391.1 - 0.00011 22.2 0.0 0.00027 20.9 0.0 1.7 2 0 0 2 2 2 1 RsgA GTPase AAA_14 PF13173.6 AHV94391.1 - 0.0003 20.8 0.0 0.00069 19.7 0.0 1.6 2 0 0 2 2 2 1 AAA domain PhoH PF02562.16 AHV94391.1 - 0.002 17.6 0.1 0.0033 16.9 0.1 1.4 1 0 0 1 1 1 1 PhoH-like protein AAA_28 PF13521.6 AHV94391.1 - 0.0051 17.1 0.0 0.0088 16.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain TniB PF05621.11 AHV94391.1 - 0.0091 15.4 0.0 4.4 6.7 0.0 2.3 1 1 1 2 2 2 2 Bacterial TniB protein ABC_tran PF00005.27 AHV94391.1 - 0.0095 16.5 0.0 0.026 15.0 0.0 1.6 1 1 0 1 1 1 1 ABC transporter AAA_18 PF13238.6 AHV94391.1 - 0.011 16.3 0.0 0.025 15.1 0.0 1.9 1 1 0 1 1 1 0 AAA domain Lon_2 PF13337.6 AHV94391.1 - 0.015 13.9 0.0 0.022 13.3 0.0 1.2 1 0 0 1 1 1 0 Putative ATP-dependent Lon protease AAA_33 PF13671.6 AHV94391.1 - 0.016 15.3 0.0 0.037 14.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 AHV94391.1 - 0.02 14.6 0.0 0.043 13.5 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain RNA_helicase PF00910.22 AHV94391.1 - 0.022 15.2 0.0 0.049 14.0 0.0 1.7 1 1 0 1 1 1 0 RNA helicase AAA_7 PF12775.7 AHV94391.1 - 0.027 14.0 0.0 0.094 12.2 0.0 1.9 2 1 0 2 2 2 0 P-loop containing dynein motor region Sigma54_activat PF00158.26 AHV94391.1 - 0.04 13.6 0.0 0.1 12.3 0.0 1.8 1 1 0 1 1 1 0 Sigma-54 interaction domain AAA_17 PF13207.6 AHV94391.1 - 0.041 14.3 0.0 0.19 12.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain DUF3572 PF12096.8 AHV94391.1 - 0.046 13.9 0.8 0.13 12.5 0.3 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3572) AAA_25 PF13481.6 AHV94391.1 - 0.058 13.0 0.0 0.36 10.4 0.0 2.0 1 1 1 2 2 2 0 AAA domain AAA_2 PF07724.14 AHV94391.1 - 0.078 13.1 0.0 0.18 11.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) Viral_helicase1 PF01443.18 AHV94391.1 - 0.12 12.1 0.0 0.17 11.6 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase NACHT PF05729.12 AHV94391.1 - 0.12 12.3 0.1 0.33 10.9 0.0 1.8 1 1 0 1 1 1 0 NACHT domain AAA_10 PF12846.7 AHV94391.1 - 0.14 11.1 0.0 0.2 10.5 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain AAA_24 PF13479.6 AHV94391.1 - 0.14 11.8 0.0 0.28 10.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain Roc PF08477.13 AHV94391.1 - 0.15 12.3 0.0 0.31 11.3 0.0 1.6 1 1 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase PRAI PF00697.22 AHV94392.1 - 1.2e-07 31.7 0.0 1.3e-07 31.6 0.0 1.0 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase RNase_T PF00929.24 AHV94393.1 - 1.4e-33 116.8 0.0 1.6e-33 116.6 0.0 1.0 1 0 0 1 1 1 1 Exonuclease DUF5051 PF16473.5 AHV94393.1 - 2.8e-05 24.2 0.0 4.7e-05 23.4 0.0 1.3 1 1 0 1 1 1 1 3' exoribonuclease, RNase T-like RNase_H_2 PF13482.6 AHV94393.1 - 0.095 12.7 0.2 8.3 6.4 0.0 2.2 2 0 0 2 2 2 0 RNase_H superfamily EamA PF00892.20 AHV94394.1 - 2.9e-40 137.6 38.9 1.4e-20 73.9 16.8 2.0 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.16 AHV94394.1 - 2e-07 30.7 14.4 1.3e-06 27.9 10.2 2.1 1 1 1 2 2 2 2 Triose-phosphate Transporter family UAA PF08449.11 AHV94394.1 - 4 6.5 14.9 0.41 9.8 6.5 2.6 2 1 1 3 3 3 0 UAA transporter family Rdx PF10262.9 AHV94395.1 - 1.2e-32 111.9 0.0 1.3e-32 111.7 0.0 1.0 1 0 0 1 1 1 1 Rdx family P5CR_dimer PF14748.6 AHV94396.1 - 8.7e-35 119.1 5.2 8.7e-35 119.1 5.2 2.0 2 0 0 2 2 2 1 Pyrroline-5-carboxylate reductase dimerisation F420_oxidored PF03807.17 AHV94396.1 - 1.2e-12 48.2 2.3 2e-12 47.5 0.1 2.4 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 AHV94396.1 - 2.8e-06 27.6 0.0 6.3e-06 26.4 0.0 1.6 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.23 AHV94396.1 - 1e-05 25.5 0.4 0.0004 20.4 0.4 2.3 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.16 AHV94396.1 - 0.0042 16.8 0.1 0.029 14.0 0.1 2.2 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA PDH PF02153.17 AHV94396.1 - 0.012 14.6 0.0 0.03 13.3 0.0 1.5 2 0 0 2 2 2 0 Prephenate dehydrogenase 3HCDH_N PF02737.18 AHV94396.1 - 0.05 13.5 0.0 9 6.1 0.0 2.5 1 1 1 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BPD_transp_1 PF00528.22 AHV94397.1 - 2.3e-21 76.4 9.1 3e-21 76.0 9.1 1.1 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component TRCF PF03461.15 AHV94398.1 - 2e-26 92.2 0.0 1.4e-25 89.4 0.0 2.3 2 0 0 2 2 2 1 TRCF domain CarD_CdnL_TRCF PF02559.16 AHV94398.1 - 3.9e-26 91.6 0.0 8e-25 87.4 0.0 2.5 2 0 0 2 2 2 1 CarD-like/TRCF domain Helicase_C PF00271.31 AHV94398.1 - 5.3e-20 71.8 0.4 2.5e-17 63.2 0.1 2.5 2 0 0 2 2 2 2 Helicase conserved C-terminal domain DEAD PF00270.29 AHV94398.1 - 1.9e-17 63.6 0.0 3.7e-17 62.6 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase UvrB_inter PF17757.1 AHV94398.1 - 2.4e-12 46.8 0.0 4.9e-12 45.9 0.0 1.6 1 0 0 1 1 1 1 UvrB interaction domain ResIII PF04851.15 AHV94398.1 - 4.3e-09 36.6 0.0 8.4e-09 35.7 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.23 AHV94398.1 - 0.00029 19.7 0.0 0.00035 19.4 0.0 1.2 1 0 0 1 1 1 1 SNF2 family N-terminal domain Glyco_tran_WecB PF03808.13 AHV94398.1 - 0.0046 16.9 0.2 0.42 10.6 0.0 2.6 3 0 0 3 3 3 1 Glycosyl transferase WecB/TagA/CpsF family ERCC3_RAD25_C PF16203.5 AHV94398.1 - 0.018 14.3 0.0 0.029 13.6 0.0 1.2 1 0 0 1 1 1 0 ERCC3/RAD25/XPB C-terminal helicase AAA_22 PF13401.6 AHV94398.1 - 0.018 15.3 0.1 0.071 13.4 0.0 2.1 2 1 0 2 2 2 0 AAA domain ELP6 PF09807.9 AHV94398.1 - 0.043 13.2 0.0 0.079 12.4 0.0 1.3 1 0 0 1 1 1 0 Elongation complex protein 6 AroM PF07302.11 AHV94398.1 - 0.044 13.2 0.0 0.13 11.6 0.0 1.8 2 0 0 2 2 2 0 AroM protein AAA_30 PF13604.6 AHV94398.1 - 0.067 12.9 0.7 0.3 10.8 0.1 2.3 2 0 0 2 2 2 0 AAA domain TonB_dep_Rec PF00593.24 AHV94399.1 - 1.1e-06 28.9 1.0 1.1e-06 28.8 1.0 1.0 1 0 0 1 1 1 1 TonB dependent receptor DDE_Tnp_ISL3 PF01610.17 AHV94400.1 - 7.9e-65 218.9 1.2 1.1e-64 218.4 0.3 1.6 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV94400.1 - 1.4e-11 43.6 0.1 3.6e-11 42.3 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV94400.1 - 5.3e-09 36.6 11.2 1.1e-08 35.6 11.2 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV94400.1 - 0.0056 16.7 0.2 0.016 15.3 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain SLT_L PF14718.6 AHV94400.1 - 0.016 15.3 1.5 0.016 15.3 1.5 1.8 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain NOB1_Zn_bind PF08772.11 AHV94400.1 - 0.017 15.2 0.2 1.2 9.3 0.0 2.5 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-IS66 PF13005.7 AHV94400.1 - 8.2 6.9 9.6 3.6 8.1 6.6 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Aminotran_3 PF00202.21 AHV94401.1 - 2.7e-05 23.0 0.0 2.9e-05 22.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aldo_ket_red PF00248.21 AHV94402.1 - 1.2e-70 238.0 0.0 1.4e-70 237.9 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family CoA_transf_3 PF02515.17 AHV94403.1 - 3.4e-55 187.7 0.0 3.9e-55 187.4 0.0 1.0 1 0 0 1 1 1 1 CoA-transferase family III SBP_bac_8 PF13416.6 AHV94404.1 - 8.8e-47 160.2 7.0 1.1e-46 159.9 7.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 AHV94404.1 - 1.1e-41 143.8 9.3 1.6e-41 143.3 9.3 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 AHV94404.1 - 1.3e-05 24.7 0.1 0.0075 15.7 0.0 2.2 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein GntR PF00392.21 AHV94406.1 - 3.1e-14 52.4 0.1 3.8e-14 52.1 0.1 1.1 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family Rrf2 PF02082.20 AHV94406.1 - 0.0013 19.0 0.0 0.0015 18.8 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator HTH_Crp_2 PF13545.6 AHV94406.1 - 0.011 15.7 0.0 0.013 15.4 0.0 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain AAA_31 PF13614.6 AHV94407.1 - 0.025 14.5 0.0 0.053 13.4 0.0 1.6 1 1 0 1 1 1 0 AAA domain CbiA PF01656.23 AHV94407.1 - 0.073 13.1 0.0 0.098 12.7 0.0 1.3 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_2 PF07724.14 AHV94408.1 - 9.6e-47 159.3 0.1 3.1e-38 131.6 0.1 2.4 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA PF00004.29 AHV94408.1 - 5.6e-17 62.4 0.0 4.3e-07 30.4 0.0 2.9 2 1 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 AHV94408.1 - 3.7e-07 30.2 0.6 2.6e-05 24.2 0.1 3.0 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.21 AHV94408.1 - 1.4e-06 27.8 1.5 0.0034 16.8 0.3 3.9 2 1 0 3 3 3 1 Magnesium chelatase, subunit ChlI ClpB_D2-small PF10431.9 AHV94408.1 - 3.3e-06 27.1 0.8 1.4e-05 25.1 0.1 2.4 2 0 0 2 2 2 1 C-terminal, D2-small domain, of ClpB protein AAA_22 PF13401.6 AHV94408.1 - 4e-06 27.2 0.0 0.00011 22.5 0.0 2.5 2 0 0 2 2 2 1 AAA domain RuvB_N PF05496.12 AHV94408.1 - 6.4e-06 26.0 0.2 0.007 16.1 0.0 2.5 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 AHV94408.1 - 5.9e-05 23.5 2.8 0.00018 22.0 0.6 2.5 2 1 0 2 2 2 1 AAA ATPase domain MCM PF00493.23 AHV94408.1 - 9.2e-05 21.6 0.1 0.0061 15.7 0.0 2.2 2 0 0 2 2 2 1 MCM P-loop domain Sigma54_activat PF00158.26 AHV94408.1 - 0.00043 20.0 0.0 0.033 13.9 0.0 2.4 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_18 PF13238.6 AHV94408.1 - 0.00092 19.8 0.0 0.0024 18.4 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 AHV94408.1 - 0.0033 17.6 0.2 0.018 15.2 0.2 2.4 2 1 0 2 2 2 1 AAA domain IstB_IS21 PF01695.17 AHV94408.1 - 0.008 15.9 0.0 0.052 13.3 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein TIP49 PF06068.13 AHV94408.1 - 0.0082 15.4 0.0 0.017 14.4 0.0 1.5 1 0 0 1 1 1 1 TIP49 P-loop domain Zeta_toxin PF06414.12 AHV94408.1 - 0.018 14.3 0.0 0.05 12.9 0.0 1.7 1 1 0 1 1 1 0 Zeta toxin TniB PF05621.11 AHV94408.1 - 0.022 14.2 0.0 0.11 11.9 0.0 2.0 1 1 1 2 2 2 0 Bacterial TniB protein AAA_14 PF13173.6 AHV94408.1 - 0.022 14.8 0.1 8.3 6.5 0.0 2.5 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 AHV94408.1 - 0.022 14.6 0.0 0.069 13.0 0.0 1.8 2 0 0 2 2 2 0 RsgA GTPase SRP54 PF00448.22 AHV94408.1 - 0.041 13.5 0.2 0.17 11.5 0.0 2.1 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_7 PF12775.7 AHV94408.1 - 0.05 13.1 0.0 0.092 12.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_24 PF13479.6 AHV94408.1 - 0.057 13.1 0.0 0.14 11.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain Nucleolin_bd PF16725.5 AHV94408.1 - 0.063 12.9 0.0 0.19 11.4 0.0 1.7 1 0 0 1 1 1 0 Nucleolin binding domain TsaE PF02367.17 AHV94408.1 - 0.071 13.1 0.0 0.14 12.1 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE DEAD PF00270.29 AHV94408.1 - 0.15 11.8 0.0 0.87 9.3 0.0 2.1 2 0 0 2 2 2 0 DEAD/DEAH box helicase NACHT PF05729.12 AHV94408.1 - 0.17 11.8 0.1 2.4 8.0 0.0 2.5 2 1 0 2 2 2 0 NACHT domain AAA_28 PF13521.6 AHV94408.1 - 0.2 11.9 0.1 0.2 11.9 0.1 3.0 3 1 1 4 4 4 0 AAA domain Dicty_CTDC PF00526.18 AHV94409.1 - 0.16 11.9 0.2 0.33 10.9 0.2 1.5 1 1 0 1 1 1 0 Dictyostelium (slime mold) repeat DUF3460 PF11943.8 AHV94410.1 - 1.3e-27 95.9 0.3 1.4e-27 95.7 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3460) DUF5444 PF17519.2 AHV94410.1 - 0.072 13.1 0.0 0.1 12.6 0.0 1.4 1 1 0 1 1 1 0 Family of unknown function (DUF5444) DUF454 PF04304.13 AHV94411.1 - 2.9e-31 107.9 2.3 3.2e-31 107.7 2.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF454) DUF4190 PF13828.6 AHV94411.1 - 0.024 14.4 0.1 0.024 14.4 0.1 2.3 3 0 0 3 3 3 0 Domain of unknown function (DUF4190) DUF3040 PF11239.8 AHV94411.1 - 0.2 12.0 0.2 0.2 12.0 0.2 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) DUF2062 PF09835.9 AHV94411.1 - 3 7.7 9.3 4.1 7.2 2.0 2.1 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2062) PTA_PTB PF01515.19 AHV94412.1 - 2e-57 194.9 0.0 3e-57 194.3 0.0 1.2 1 0 0 1 1 1 1 Phosphate acetyl/butaryl transferase malic PF00390.19 AHV94412.1 - 1e-29 103.6 0.2 4e-27 95.2 0.2 2.7 1 1 0 1 1 1 1 Malic enzyme, N-terminal domain Malic_M PF03949.15 AHV94412.1 - 8.6e-25 87.5 0.2 2.7e-24 85.9 0.2 1.8 1 1 0 1 1 1 1 Malic enzyme, NAD binding domain IucA_IucC PF04183.12 AHV94413.1 - 2.1e-75 253.4 0.0 3e-75 252.9 0.0 1.2 1 0 0 1 1 1 1 IucA / IucC family FhuF PF06276.12 AHV94413.1 - 1.9e-38 132.4 1.8 1.9e-38 132.4 1.8 1.6 2 0 0 2 2 2 1 Ferric iron reductase FhuF-like transporter Trypsin_2 PF13365.6 AHV94415.1 - 3.7e-34 118.8 0.3 3.7e-34 118.8 0.3 2.0 3 0 0 3 3 3 1 Trypsin-like peptidase domain PDZ_2 PF13180.6 AHV94415.1 - 2e-28 98.6 5.1 5.9e-18 65.0 0.4 2.6 2 0 0 2 2 2 2 PDZ domain PDZ_6 PF17820.1 AHV94415.1 - 1.4e-20 72.9 3.6 1.1e-11 44.3 0.1 2.9 2 0 0 2 2 2 2 PDZ domain PDZ PF00595.24 AHV94415.1 - 7.5e-17 61.5 5.4 3.9e-09 36.7 0.6 3.2 2 1 0 2 2 2 2 PDZ domain Trypsin PF00089.26 AHV94415.1 - 1.4e-12 48.0 0.0 2.2e-12 47.3 0.0 1.3 1 0 0 1 1 1 1 Trypsin Peptidase_S46 PF10459.9 AHV94415.1 - 3.6e-05 22.6 0.0 0.13 10.9 0.0 2.2 2 0 0 2 2 2 2 Peptidase S46 Tricorn_PDZ PF14685.6 AHV94415.1 - 0.0015 18.5 0.8 0.43 10.6 0.2 2.6 2 0 0 2 2 2 2 Tricorn protease PDZ domain PDZ_1 PF12812.7 AHV94415.1 - 0.026 14.6 0.0 0.063 13.3 0.0 1.6 1 0 0 1 1 1 0 PDZ-like domain Peptidase_S29 PF02907.15 AHV94415.1 - 0.039 13.7 0.0 0.1 12.3 0.0 1.6 1 0 0 1 1 1 0 Hepatitis C virus NS3 protease AMP-binding PF00501.28 AHV94416.1 - 3.7e-89 299.3 0.0 4.5e-89 299.0 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme Acetyltransf_4 PF13420.7 AHV94417.1 - 1.8e-24 86.7 0.0 2e-24 86.5 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 AHV94417.1 - 9.2e-14 51.7 0.1 1.2e-13 51.3 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 AHV94417.1 - 1.9e-08 34.6 0.1 3.1e-08 33.9 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 AHV94417.1 - 5.4e-08 33.6 0.0 7e-08 33.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 AHV94417.1 - 1.1e-07 31.8 0.0 1.5e-07 31.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 AHV94417.1 - 0.00063 19.7 0.0 0.0011 18.8 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein MatE PF01554.18 AHV94419.1 - 6.4e-38 129.9 33.2 3.4e-23 82.1 6.2 2.9 4 0 0 4 4 4 2 MatE Polysacc_synt_C PF14667.6 AHV94419.1 - 2.3e-06 27.7 6.2 2.3e-06 27.7 6.2 4.2 2 2 2 5 5 5 1 Polysaccharide biosynthesis C-terminal domain VirB3 PF05101.13 AHV94419.1 - 0.0088 16.3 0.9 0.0088 16.3 0.9 4.9 4 3 0 4 4 4 1 Type IV secretory pathway, VirB3-like protein DTW PF03942.15 AHV94420.1 - 1.8e-16 60.4 0.0 2.2e-16 60.2 0.0 1.0 1 0 0 1 1 1 1 DTW domain HAD PF12710.7 AHV94421.1 - 1.2e-37 130.1 0.4 1.5e-37 129.8 0.4 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase SpoIIE PF07228.12 AHV94422.1 - 2.1e-21 76.8 0.1 3e-21 76.2 0.1 1.3 1 0 0 1 1 1 1 Stage II sporulation protein E (SpoIIE) HAMP PF00672.25 AHV94422.1 - 4.6e-15 55.7 0.6 2e-14 53.7 0.1 2.3 2 0 0 2 2 2 1 HAMP domain baeRF_family10 PF18854.1 AHV94422.1 - 0.22 11.8 1.7 0.23 11.7 0.1 1.9 2 0 0 2 2 2 0 Bacterial archaeo-eukaryotic release factor family 10 Cytochrome_CBB3 PF13442.6 AHV94423.1 - 1.2e-23 83.1 0.5 6.7e-12 45.5 0.0 3.4 3 0 0 3 3 3 3 Cytochrome C oxidase, cbb3-type, subunit III Cytochrom_C PF00034.21 AHV94423.1 - 4.7e-22 78.9 0.0 4.3e-09 37.4 0.0 3.5 3 0 0 3 3 3 3 Cytochrome c Cytochrome_C7 PF14522.6 AHV94423.1 - 0.0012 18.8 0.1 9.8 6.3 0.0 3.2 3 0 0 3 3 3 1 Cytochrome c7 and related cytochrome c CCP_MauG PF03150.14 AHV94423.1 - 0.02 15.6 0.1 7.7 7.2 0.0 3.1 3 0 0 3 3 3 0 Di-haem cytochrome c peroxidase Paired_CXXCH_1 PF09699.10 AHV94423.1 - 0.029 14.1 6.5 6.9 6.5 0.1 3.3 3 0 0 3 3 3 0 Doubled CXXCH motif (Paired_CXXCH_1) DUF1924 PF09086.11 AHV94423.1 - 0.047 14.0 0.6 15 6.1 0.1 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF1924) DHOR PF06537.11 AHV94423.1 - 0.054 12.1 1.2 0.5 8.9 0.0 2.3 3 0 0 3 3 3 0 Di-haem oxidoreductase, putative peroxidase Cytochrome_P460 PF16694.5 AHV94423.1 - 0.062 13.6 0.3 75 3.7 0.0 3.2 3 0 0 3 3 3 0 Cytochrome P460 Cytochrom_c3_2 PF14537.6 AHV94423.1 - 0.13 12.7 1.0 20 5.7 0.0 3.0 3 0 0 3 3 3 0 Cytochrome c3 Cytochrom_C550 PF14495.6 AHV94423.1 - 0.19 11.4 1.7 0.53 10.0 0.0 2.6 4 0 0 4 4 4 0 Cytochrome c-550 domain GSu_C4xC__C2xCH PF09698.10 AHV94423.1 - 0.43 11.4 10.9 5.5 7.9 0.2 3.9 4 0 0 4 4 3 0 Geobacter CxxxxCH...CXXCH motif (GSu_C4xC__C2xCH) Phage_AlpA PF05930.12 AHV94424.1 - 3.6e-14 52.3 0.2 4.5e-14 52.0 0.2 1.2 1 0 0 1 1 1 1 Prophage CP4-57 regulatory protein (AlpA) NUFIP1 PF10453.9 AHV94424.1 - 0.073 12.9 0.1 0.11 12.4 0.1 1.3 1 0 0 1 1 1 0 Nuclear fragile X mental retardation-interacting protein 1 (NUFIP1) Phage_term_smal PF05944.12 AHV94424.1 - 0.12 12.4 0.0 0.14 12.1 0.0 1.0 1 0 0 1 1 1 0 Phage small terminase subunit rve PF00665.26 AHV94425.1 - 1.5e-23 83.3 0.3 3.8e-23 81.9 0.0 1.7 2 0 0 2 2 2 1 Integrase core domain rve_3 PF13683.6 AHV94425.1 - 2.1e-19 69.1 3.7 2.2e-19 69.0 2.7 1.6 2 0 0 2 2 2 1 Integrase core domain PG_binding_2 PF08823.11 AHV94425.1 - 0.026 14.8 0.0 0.044 14.1 0.0 1.4 1 0 0 1 1 1 0 Putative peptidoglycan binding domain FAD-SLDH PF12318.8 AHV94426.1 - 9.7e-41 139.5 0.1 1.1e-40 139.3 0.1 1.0 1 0 0 1 1 1 1 Membrane bound FAD containing D-sorbitol dehydrogenase Cupin_5 PF06172.11 AHV94427.1 - 5.8e-13 49.2 0.0 6.6e-13 49.0 0.0 1.1 1 0 0 1 1 1 1 Cupin superfamily (DUF985) Ku PF02735.16 AHV94428.1 - 1.5e-34 119.5 0.2 2.6e-34 118.7 0.0 1.4 2 0 0 2 2 2 1 Ku70/Ku80 beta-barrel domain Pol_alpha_B_N PF08418.10 AHV94428.1 - 0.089 12.7 9.4 0.12 12.3 9.4 1.1 1 0 0 1 1 1 0 DNA polymerase alpha subunit B N-terminal DHquinase_II PF01220.19 AHV94430.1 - 8.3e-61 203.7 0.3 9.3e-61 203.5 0.3 1.0 1 0 0 1 1 1 1 Dehydroquinase class II Peripla_BP_4 PF13407.6 AHV94430.1 - 0.035 13.7 0.2 0.046 13.3 0.2 1.1 1 0 0 1 1 1 0 Periplasmic binding protein domain DHO_dh PF01180.21 AHV94432.1 - 2.6e-88 296.1 0.0 2.9e-88 295.9 0.0 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase NMO PF03060.15 AHV94432.1 - 0.069 12.5 2.0 0.099 12.0 2.0 1.2 1 0 0 1 1 1 0 Nitronate monooxygenase RNA_pol_A_bac PF01000.26 AHV94433.1 - 8.4e-26 90.5 0.1 1.6e-25 89.6 0.1 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_A_CTD PF03118.15 AHV94433.1 - 5.7e-25 86.9 0.1 1e-24 86.0 0.1 1.4 1 0 0 1 1 1 1 Bacterial RNA polymerase, alpha chain C terminal domain RNA_pol_L PF01193.24 AHV94433.1 - 3.6e-23 80.8 0.0 7.9e-23 79.7 0.0 1.6 2 0 0 2 2 2 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L_2 PF13656.6 AHV94433.1 - 0.0003 20.5 0.2 0.89 9.4 0.0 3.1 3 1 0 3 3 3 2 RNA polymerase Rpb3/Rpb11 dimerisation domain AAA_lid_4 PF17864.1 AHV94433.1 - 0.11 12.3 0.0 0.25 11.1 0.0 1.6 1 0 0 1 1 1 0 RuvB AAA lid domain DNA_pol3_delta2 PF13177.6 AHV94434.1 - 1.2e-39 135.7 0.0 1.7e-39 135.2 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase III, delta subunit 4HBT PF03061.22 AHV94436.1 - 5.7e-10 39.4 0.2 8.7e-10 38.8 0.2 1.3 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.6 AHV94436.1 - 4e-05 23.8 0.0 4.8e-05 23.5 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) HlyD_D23 PF16576.5 AHV94437.1 - 9.7e-14 51.1 3.2 1.3e-12 47.5 3.2 2.2 1 1 0 1 1 1 1 Barrel-sandwich domain of CusB or HlyD membrane-fusion Biotin_lipoyl_2 PF13533.6 AHV94437.1 - 1.1e-08 34.7 1.9 3e-07 30.2 0.3 2.9 2 0 0 2 2 2 1 Biotin-lipoyl like HlyD_3 PF13437.6 AHV94437.1 - 5.8e-08 33.4 5.4 6.8e-05 23.5 0.7 3.5 3 1 0 3 3 3 2 HlyD family secretion protein HlyD PF00529.20 AHV94437.1 - 1.2e-05 25.1 5.2 2.4e-05 24.1 5.1 1.7 1 1 0 1 1 1 1 HlyD membrane-fusion protein of T1SS TonB_dep_Rec PF00593.24 AHV94439.1 - 5.5e-52 178.2 38.0 5.5e-52 178.2 38.0 2.1 1 1 1 2 2 2 1 TonB dependent receptor Plug PF07715.15 AHV94439.1 - 3.3e-18 66.2 1.4 3.3e-18 66.2 1.4 2.8 3 0 0 3 3 3 1 TonB-dependent Receptor Plug Domain STN PF07660.14 AHV94439.1 - 6e-06 26.0 0.5 4.8e-05 23.1 0.0 2.8 4 0 0 4 4 4 1 Secretin and TonB N terminus short domain TctC PF03401.14 AHV94440.1 - 1.1e-70 237.8 0.0 1.4e-70 237.5 0.0 1.1 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor LysR_substrate PF03466.20 AHV94441.1 - 1.7e-12 47.2 0.8 1.9e-12 47.0 0.8 1.0 1 0 0 1 1 1 1 LysR substrate binding domain LysR_substrate PF03466.20 AHV94442.1 - 4.3e-26 91.6 4.0 6e-26 91.1 4.0 1.2 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 AHV94442.1 - 6.1e-18 64.5 0.5 1.2e-17 63.6 0.5 1.5 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_30 PF13556.6 AHV94442.1 - 0.0077 16.0 0.2 0.017 14.9 0.2 1.6 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain GATase_6 PF13522.6 AHV94443.1 - 5.8e-17 62.2 0.5 1e-16 61.4 0.1 1.7 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_7 PF13537.6 AHV94443.1 - 1.3e-14 54.2 0.0 3.4e-14 52.8 0.0 1.7 2 0 0 2 2 2 1 Glutamine amidotransferase domain Pribosyltran PF00156.27 AHV94443.1 - 2.4e-08 33.6 0.0 4.9e-08 32.7 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain GATase_4 PF13230.6 AHV94443.1 - 0.00058 18.8 0.0 0.001 18.1 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferases class-II DAHP_synth_1 PF00793.20 AHV94444.1 - 1.4e-95 319.3 0.0 1.9e-95 318.9 0.0 1.0 1 0 0 1 1 1 1 DAHP synthetase I family OEP PF02321.18 AHV94445.1 - 1.5e-53 181.4 34.5 1.5e-28 99.9 10.2 2.1 2 0 0 2 2 2 2 Outer membrane efflux protein DUF1604 PF07713.13 AHV94445.1 - 0.19 11.6 0.3 0.63 9.9 0.3 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF1604) rve PF00665.26 AHV94446.1 - 7.9e-14 51.9 0.0 3.1e-12 46.7 0.0 2.1 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 AHV94446.1 - 9.1e-12 44.9 8.6 1.8e-11 44.0 8.6 1.5 1 0 0 1 1 1 1 HTH-like domain Rhomboid_SP PF12595.8 AHV94446.1 - 0.0029 17.0 0.4 0.96 8.8 0.0 2.2 1 1 1 2 2 2 2 Rhomboid serine protease OEP PF02321.18 AHV94447.1 - 2.7e-32 112.1 26.3 6.5e-22 78.3 8.4 2.0 2 0 0 2 2 2 2 Outer membrane efflux protein Peptidase_M48 PF01435.18 AHV94448.1 - 1.8e-20 73.6 0.1 2.3e-20 73.2 0.1 1.1 1 0 0 1 1 1 1 Peptidase family M48 DUF2268 PF10026.9 AHV94448.1 - 0.044 13.3 0.0 0.059 12.9 0.0 1.1 1 0 0 1 1 1 0 Predicted Zn-dependent protease (DUF2268) Zn_peptidase_2 PF04298.12 AHV94448.1 - 0.047 13.1 0.5 0.062 12.7 0.5 1.1 1 0 0 1 1 1 0 Putative neutral zinc metallopeptidase DUF2201_N PF13203.6 AHV94448.1 - 0.087 12.4 0.0 0.11 12.0 0.0 1.2 1 0 0 1 1 1 0 Putative metallopeptidase domain AAA_2 PF07724.14 AHV94449.1 - 5.7e-47 160.0 0.0 8.8e-47 159.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) zf-C4_ClpX PF06689.13 AHV94449.1 - 5.3e-19 67.8 5.4 5.3e-19 67.8 5.4 1.8 2 0 0 2 2 1 1 ClpX C4-type zinc finger AAA PF00004.29 AHV94449.1 - 7e-18 65.3 0.0 1.1e-16 61.5 0.0 2.5 2 1 1 3 3 2 1 ATPase family associated with various cellular activities (AAA) ClpB_D2-small PF10431.9 AHV94449.1 - 4.4e-16 58.7 0.3 4.4e-16 58.7 0.3 1.9 2 0 0 2 2 1 1 C-terminal, D2-small domain, of ClpB protein AAA_5 PF07728.14 AHV94449.1 - 9.5e-08 32.1 0.2 2.2e-06 27.7 0.2 2.7 3 1 0 3 3 2 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 AHV94449.1 - 2.1e-07 31.3 0.1 9.4e-07 29.2 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_7 PF12775.7 AHV94449.1 - 0.00014 21.4 0.0 0.00031 20.3 0.0 1.5 1 0 0 1 1 1 1 P-loop containing dynein motor region Mg_chelatase PF01078.21 AHV94449.1 - 0.00027 20.4 0.1 0.0016 17.8 0.2 2.1 1 1 0 2 2 2 1 Magnesium chelatase, subunit ChlI RuvB_N PF05496.12 AHV94449.1 - 0.0003 20.5 0.1 0.00084 19.1 0.1 1.7 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain Sigma54_activat PF00158.26 AHV94449.1 - 0.00049 19.9 0.0 0.037 13.7 0.0 2.6 2 1 0 2 2 2 1 Sigma-54 interaction domain AAA_24 PF13479.6 AHV94449.1 - 0.0005 19.8 0.0 0.00085 19.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 AHV94449.1 - 0.00074 20.1 0.0 0.0013 19.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain NACHT PF05729.12 AHV94449.1 - 0.00088 19.2 0.0 0.072 13.0 0.0 2.8 2 0 0 2 2 2 1 NACHT domain AAA_16 PF13191.6 AHV94449.1 - 0.0009 19.7 0.2 0.016 15.6 0.0 2.8 2 1 0 2 2 2 1 AAA ATPase domain AAA_14 PF13173.6 AHV94449.1 - 0.00094 19.2 0.0 0.0017 18.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 AHV94449.1 - 0.0018 18.4 0.0 0.0036 17.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain Sigma54_activ_2 PF14532.6 AHV94449.1 - 0.0022 18.1 0.0 0.006 16.7 0.0 1.7 1 0 0 1 1 1 1 Sigma-54 interaction domain IstB_IS21 PF01695.17 AHV94449.1 - 0.0034 17.1 0.0 0.007 16.1 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein DUF1296 PF06972.11 AHV94449.1 - 0.0049 17.0 0.0 0.011 15.9 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF1296) PduV-EutP PF10662.9 AHV94449.1 - 0.0057 16.4 0.1 0.021 14.5 0.1 1.9 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation T2SSE PF00437.20 AHV94449.1 - 0.0093 15.0 0.0 0.017 14.2 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein ABC_tran PF00005.27 AHV94449.1 - 0.011 16.3 0.0 0.027 15.0 0.0 1.8 2 0 0 2 2 1 0 ABC transporter TsaE PF02367.17 AHV94449.1 - 0.011 15.7 0.0 0.02 14.9 0.0 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE MCM PF00493.23 AHV94449.1 - 0.012 14.8 0.0 0.02 14.0 0.0 1.3 1 0 0 1 1 1 0 MCM P-loop domain AAA_28 PF13521.6 AHV94449.1 - 0.014 15.6 0.0 0.031 14.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 AHV94449.1 - 0.019 14.7 0.1 0.19 11.4 0.1 1.9 1 1 1 2 2 2 0 AAA ATPase domain RNA_helicase PF00910.22 AHV94449.1 - 0.022 15.1 0.1 0.066 13.6 0.1 1.9 1 1 0 1 1 1 0 RNA helicase TIP49 PF06068.13 AHV94449.1 - 0.022 14.0 0.0 0.032 13.5 0.0 1.4 1 0 0 1 1 1 0 TIP49 P-loop domain AAA_21 PF13304.6 AHV94449.1 - 0.03 14.1 0.0 0.064 13.1 0.0 1.5 1 1 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 AHV94449.1 - 0.03 14.0 0.0 0.07 12.9 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain PhoH PF02562.16 AHV94449.1 - 0.04 13.4 0.0 0.094 12.2 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein ATPase PF06745.13 AHV94449.1 - 0.043 13.2 2.1 5.1 6.4 0.1 2.3 1 1 1 2 2 2 0 KaiC AAA_8 PF12780.7 AHV94449.1 - 0.048 13.0 0.0 0.098 12.0 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region D4 ResIII PF04851.15 AHV94449.1 - 0.061 13.3 0.5 0.3 11.1 0.3 2.3 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_19 PF13245.6 AHV94449.1 - 0.074 13.4 0.3 3.2 8.1 0.1 2.6 2 1 1 3 3 2 0 AAA domain U62_UL91 PF17442.2 AHV94449.1 - 0.075 13.0 0.1 1.5 8.9 0.0 2.7 2 0 0 2 2 2 0 Functional domain of U62 and UL91 proteins DEAD PF00270.29 AHV94449.1 - 0.078 12.7 0.4 0.35 10.6 0.4 2.4 1 1 0 1 1 1 0 DEAD/DEAH box helicase SMC_N PF02463.19 AHV94449.1 - 0.078 12.4 0.0 0.15 11.5 0.0 1.4 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain SKI PF01202.22 AHV94449.1 - 0.085 13.0 0.0 0.16 12.1 0.0 1.5 1 0 0 1 1 1 0 Shikimate kinase AAA_30 PF13604.6 AHV94449.1 - 0.1 12.3 0.1 0.27 11.0 0.0 1.7 2 0 0 2 2 1 0 AAA domain Fer4 PF00037.27 AHV94450.1 - 3.5e-13 48.8 15.0 2.4e-07 30.3 2.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 AHV94450.1 - 2.2e-12 47.3 7.6 3.3e-12 46.8 7.6 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 AHV94450.1 - 6.2e-10 39.4 1.9 0.00016 22.1 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 AHV94450.1 - 2.6e-09 37.1 7.6 3.9e-09 36.5 7.6 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 AHV94450.1 - 1.4e-08 34.7 8.8 3.5e-08 33.4 9.1 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 AHV94450.1 - 3.3e-08 34.4 3.7 0.002 19.0 0.8 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 AHV94450.1 - 6.6e-07 29.4 22.4 0.00011 22.3 12.2 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 AHV94450.1 - 1.7e-06 28.1 10.0 0.00039 20.7 1.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 AHV94450.1 - 1e-05 25.3 14.7 0.0025 17.8 4.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 AHV94450.1 - 1.3e-05 25.0 12.0 0.0015 18.5 3.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 AHV94450.1 - 5.5e-05 23.6 9.9 0.0072 16.9 11.2 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain c-SKI_SMAD_bind PF08782.10 AHV94450.1 - 0.00065 19.9 4.6 0.26 11.5 0.5 2.2 1 1 1 2 2 2 2 c-SKI Smad4 binding domain Fer4_3 PF12798.7 AHV94450.1 - 0.0078 17.1 14.7 0.081 13.9 2.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 AHV94450.1 - 0.0088 16.2 7.1 0.15 12.2 1.0 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 AHV94450.1 - 0.016 15.8 12.5 0.14 12.7 2.7 2.8 2 1 1 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 AHV94450.1 - 0.07 14.0 10.5 0.55 11.1 1.7 2.3 1 1 2 3 3 3 0 4Fe-4S dicluster domain EPF PF17181.4 AHV94450.1 - 0.15 12.1 0.4 0.15 12.1 0.4 2.1 2 0 0 2 2 2 0 Epidermal patterning factor proteins Fer4_15 PF13459.6 AHV94450.1 - 0.87 10.4 10.0 5.9 7.7 2.5 2.7 2 1 0 2 2 2 0 4Fe-4S single cluster domain ETF_QO PF05187.13 AHV94450.1 - 0.93 9.7 5.3 3.3 7.9 3.6 2.0 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_20 PF14691.6 AHV94450.1 - 3.2 7.5 11.7 1.1 9.1 0.8 2.2 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 2-oxogl_dehyd_N PF16078.5 AHV94451.1 - 0.13 11.9 0.0 0.22 11.2 0.0 1.4 1 0 0 1 1 1 0 2-oxoglutarate dehydrogenase N-terminus Rotamase PF00639.21 AHV94452.1 - 5.4e-26 91.4 0.0 1.1e-25 90.4 0.0 1.5 1 0 0 1 1 1 1 PPIC-type PPIASE domain Rotamase_3 PF13616.6 AHV94452.1 - 2.8e-25 89.1 0.0 4.3e-25 88.5 0.0 1.3 1 0 0 1 1 1 1 PPIC-type PPIASE domain Rotamase_2 PF13145.6 AHV94452.1 - 2e-11 44.8 0.0 5.2e-11 43.4 0.0 1.6 1 1 1 2 2 2 1 PPIC-type PPIASE domain LysR_substrate PF03466.20 AHV94453.1 - 2.6e-22 79.2 1.1 2.9e-22 79.1 1.1 1.0 1 0 0 1 1 1 1 LysR substrate binding domain Ectoine_synth PF06339.12 AHV94454.1 - 3.3e-57 192.2 0.0 3.7e-57 192.0 0.0 1.0 1 0 0 1 1 1 1 Ectoine synthase Cupin_2 PF07883.11 AHV94454.1 - 9.2e-06 25.3 0.5 1.3e-05 24.8 0.5 1.2 1 0 0 1 1 1 1 Cupin domain Glyco_trans_1_4 PF13692.6 AHV94455.1 - 2.7e-11 44.0 0.1 5e-11 43.2 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 AHV94455.1 - 2.3e-10 40.3 0.0 3.3e-10 39.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 AHV94455.1 - 8e-06 26.0 2.3 0.00075 19.5 0.7 2.8 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 AHV94455.1 - 0.067 13.6 0.0 0.19 12.1 0.0 1.8 1 0 0 1 1 1 0 Glycosyl transferases group 1 EamA PF00892.20 AHV94456.1 - 4.2e-24 85.3 27.0 5.6e-13 49.2 9.4 2.0 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.16 AHV94456.1 - 0.002 17.5 0.0 0.003 17.0 0.0 1.2 1 0 0 1 1 1 1 Triose-phosphate Transporter family CPSase_L_D2 PF02786.17 AHV94457.1 - 9.1e-05 22.0 0.0 0.0003 20.3 0.0 1.7 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Biotin_carb_C PF02785.19 AHV94457.1 - 0.15 12.2 0.0 2.1 8.5 0.0 2.2 2 0 0 2 2 2 0 Biotin carboxylase C-terminal domain ASCH PF04266.14 AHV94458.1 - 0.024 15.2 0.0 0.038 14.6 0.0 1.3 1 1 0 1 1 1 0 ASCH domain DUF179 PF02622.15 AHV94459.1 - 2e-24 86.4 0.0 2.2e-24 86.2 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized ACR, COG1678 rve PF00665.26 AHV94461.1 - 2.9e-32 111.3 0.7 4.3e-32 110.8 0.1 1.6 2 0 0 2 2 1 1 Integrase core domain LZ_Tnp_IS481 PF13011.6 AHV94461.1 - 7.7e-22 77.6 2.7 1.1e-19 70.7 0.4 2.6 1 1 1 2 2 2 1 leucine-zipper of insertion element IS481 rve_3 PF13683.6 AHV94461.1 - 5e-19 67.8 2.7 1.2e-18 66.6 2.7 1.7 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.6 AHV94461.1 - 6.1e-17 60.9 4.4 1.2e-07 31.3 0.1 2.7 2 0 0 2 2 2 2 Homeodomain-like domain HTH_28 PF13518.6 AHV94461.1 - 1.5e-15 57.1 6.5 5.9e-11 42.3 0.1 3.4 4 0 0 4 4 3 2 Helix-turn-helix domain HTH_29 PF13551.6 AHV94461.1 - 9.8e-12 44.7 0.6 2.6e-06 27.4 0.0 2.6 2 0 0 2 2 2 2 Winged helix-turn helix HTH_32 PF13565.6 AHV94461.1 - 9.4e-11 42.2 0.7 9.4e-11 42.2 0.7 2.4 2 1 0 2 2 2 1 Homeodomain-like domain HTH_38 PF13936.6 AHV94461.1 - 1.5e-06 27.9 0.6 5.1e-06 26.1 0.5 2.1 2 0 0 2 2 1 1 Helix-turn-helix domain MarR_2 PF12802.7 AHV94461.1 - 8e-06 25.6 3.1 9.5e-05 22.2 1.2 2.6 2 0 0 2 2 2 1 MarR family HTH_31 PF13560.6 AHV94461.1 - 1.4e-05 25.4 1.7 0.00059 20.1 0.4 3.2 3 0 0 3 3 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 AHV94461.1 - 3e-05 23.6 0.1 0.0064 16.1 0.3 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 AHV94461.1 - 4.6e-05 22.9 0.1 0.00056 19.4 0.2 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 YdaS_antitoxin PF15943.5 AHV94461.1 - 0.00022 21.0 0.2 0.24 11.3 0.0 2.8 2 0 0 2 2 2 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_Tnp_ISL3 PF13542.6 AHV94461.1 - 0.00023 20.5 8.5 0.002 17.5 0.6 3.9 4 0 0 4 4 3 1 Helix-turn-helix domain of transposase family ISL3 HTH_24 PF13412.6 AHV94461.1 - 0.00028 20.4 0.2 0.0021 17.6 0.3 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_3 PF01381.22 AHV94461.1 - 0.00032 20.7 0.7 0.013 15.5 0.3 2.5 2 0 0 2 2 2 1 Helix-turn-helix HTH_Crp_2 PF13545.6 AHV94461.1 - 0.0004 20.3 0.3 0.0027 17.6 0.2 2.3 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain Trp_repressor PF01371.19 AHV94461.1 - 0.00081 19.5 0.2 0.006 16.7 0.1 2.2 2 0 0 2 2 2 1 Trp repressor protein CENP-B_N PF04218.13 AHV94461.1 - 0.0016 18.0 0.0 1.6 8.5 0.1 2.3 2 0 0 2 2 2 1 CENP-B N-terminal DNA-binding domain LacI PF00356.21 AHV94461.1 - 0.0017 18.1 1.8 0.0046 16.7 0.7 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family Fe_dep_repress PF01325.19 AHV94461.1 - 0.002 18.3 0.0 0.034 14.4 0.1 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.20 AHV94461.1 - 0.0023 17.8 0.0 0.93 9.4 0.0 2.5 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 AHV94461.1 - 0.0025 17.6 1.3 0.035 13.9 0.7 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_psq PF05225.16 AHV94461.1 - 0.0025 17.5 0.7 2.3 8.0 0.4 2.9 3 0 0 3 3 3 1 helix-turn-helix, Psq domain HTH_11 PF08279.12 AHV94461.1 - 0.0026 17.7 0.4 0.015 15.3 0.5 2.2 2 0 0 2 2 2 1 HTH domain SpoIIID PF12116.8 AHV94461.1 - 0.0026 17.8 0.0 1.1 9.4 0.0 2.4 2 0 0 2 2 2 1 Stage III sporulation protein D HTH_AsnC-type PF13404.6 AHV94461.1 - 0.0036 17.1 2.7 0.045 13.6 1.1 2.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain RepB PF07506.11 AHV94461.1 - 0.0042 17.2 0.1 0.55 10.3 0.1 2.3 1 1 1 2 2 2 1 RepB plasmid partitioning protein HTH_17 PF12728.7 AHV94461.1 - 0.0043 17.2 0.7 6.1 7.1 0.0 3.3 3 1 0 3 3 3 0 Helix-turn-helix domain HTH_Tnp_1 PF01527.20 AHV94461.1 - 0.005 17.1 0.5 0.11 12.8 0.0 2.7 1 1 1 2 2 2 1 Transposase GntR PF00392.21 AHV94461.1 - 0.0053 16.4 0.8 0.5 10.1 0.3 2.5 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_10 PF04967.12 AHV94461.1 - 0.0077 16.0 0.1 0.049 13.4 0.2 2.2 2 0 0 2 2 2 1 HTH DNA binding domain HTH_35 PF13693.6 AHV94461.1 - 0.0093 16.0 1.5 0.073 13.1 0.6 2.7 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding UPF0175 PF03683.13 AHV94461.1 - 0.014 15.1 0.4 0.1 12.3 0.1 2.4 2 1 0 2 2 2 0 Uncharacterised protein family (UPF0175) HTH_30 PF13556.6 AHV94461.1 - 0.015 15.1 0.1 2 8.3 0.0 2.6 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain HTH_37 PF13744.6 AHV94461.1 - 0.016 15.2 0.1 0.13 12.3 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Tnp_4 PF13613.6 AHV94461.1 - 0.016 14.9 0.1 0.067 12.9 0.0 2.0 2 0 0 2 2 1 0 Helix-turn-helix of DDE superfamily endonuclease HTH_36 PF13730.6 AHV94461.1 - 0.02 14.8 0.1 0.58 10.2 0.0 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain KORA PF16509.5 AHV94461.1 - 0.034 14.4 0.1 3.6 8.0 0.0 3.0 3 0 0 3 3 3 0 TrfB plasmid transcriptional repressor MarR PF01047.22 AHV94461.1 - 0.045 13.7 0.1 0.14 12.1 0.1 1.8 2 0 0 2 2 1 0 MarR family DDE_Tnp_IS240 PF13610.6 AHV94461.1 - 0.048 13.9 0.1 0.071 13.3 0.1 1.3 1 0 0 1 1 1 0 DDE domain Crp PF00325.20 AHV94461.1 - 0.05 13.3 3.2 0.062 13.0 0.5 2.5 3 0 0 3 3 3 0 Bacterial regulatory proteins, crp family P22_Cro PF14549.6 AHV94461.1 - 0.051 13.4 1.6 9.6 6.1 0.1 2.5 2 0 0 2 2 2 0 DNA-binding transcriptional regulator Cro DUF746 PF05344.11 AHV94461.1 - 0.085 12.7 0.1 0.98 9.3 0.0 2.3 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) HTH_1 PF00126.27 AHV94461.1 - 0.1 12.5 2.8 4.7 7.2 0.5 2.6 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_26 PF13443.6 AHV94461.1 - 0.17 12.3 0.0 3.6 8.1 0.1 2.8 3 0 0 3 3 3 0 Cro/C1-type HTH DNA-binding domain HTH_8 PF02954.19 AHV94461.1 - 0.19 11.5 0.9 14 5.5 0.7 2.7 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family HTH_Tnp_Tc3_2 PF01498.18 AHV94461.1 - 0.27 11.5 2.6 0.47 10.7 0.1 2.6 3 0 0 3 3 1 0 Transposase HTH_33 PF13592.6 AHV94461.1 - 0.56 9.9 3.1 2.9 7.6 0.1 3.4 4 0 0 4 4 2 0 Winged helix-turn helix MerR PF00376.23 AHV94461.1 - 0.72 9.7 6.8 3.2 7.6 0.0 3.6 4 0 0 4 4 2 0 MerR family regulatory protein AMP-binding PF00501.28 AHV94462.1 - 4.3e-103 345.2 0.0 5.2e-103 344.9 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 AHV94462.1 - 2e-19 70.3 0.5 8e-19 68.4 0.1 2.2 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain Abhydrolase_1 PF00561.20 AHV94463.1 - 3.2e-16 59.7 0.2 2e-14 53.9 0.2 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 AHV94463.1 - 1.3e-15 58.6 7.4 1.7e-15 58.2 7.4 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 AHV94463.1 - 7.7e-10 38.4 0.2 3.7e-09 36.2 0.2 1.9 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Thioesterase PF00975.20 AHV94463.1 - 0.008 16.3 0.3 0.033 14.3 0.2 1.9 2 0 0 2 2 2 1 Thioesterase domain Diphthami_syn_2 PF01902.17 AHV94463.1 - 0.05 13.1 0.0 0.082 12.4 0.0 1.2 1 0 0 1 1 1 0 Diphthamide synthase ABC_tran PF00005.27 AHV94464.1 - 2.3e-09 37.9 0.0 3.6e-09 37.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 AHV94464.1 - 2.4e-05 24.8 0.0 3.5e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region sCache_3_2 PF17203.4 AHV94464.1 - 0.07 13.3 0.2 0.092 12.9 0.2 1.2 1 0 0 1 1 1 0 Single cache domain 3 FecR PF04773.13 AHV94465.1 - 1.4e-16 60.9 0.2 3e-16 59.8 0.2 1.6 1 0 0 1 1 1 1 FecR protein DUF4880 PF16220.5 AHV94465.1 - 4.3e-13 48.9 3.6 4.3e-13 48.9 3.6 2.9 3 0 0 3 3 3 1 Domain of unknown function (DUF4880) rve PF00665.26 AHV94466.1 - 7e-21 74.6 0.3 2.3e-20 73.0 0.0 1.7 2 0 0 2 2 2 1 Integrase core domain rve_3 PF13683.6 AHV94466.1 - 9.8e-20 70.1 2.7 1.4e-19 69.6 2.7 1.2 1 0 0 1 1 1 1 Integrase core domain PG_binding_2 PF08823.11 AHV94466.1 - 0.019 15.3 0.0 0.027 14.8 0.0 1.3 1 0 0 1 1 1 0 Putative peptidoglycan binding domain DDE_Tnp_1_2 PF13586.6 AHV94466.1 - 0.093 13.1 0.4 0.22 11.9 0.1 1.8 1 1 1 2 2 2 0 Transposase DDE domain FAA_hydrolase PF01557.18 AHV94467.1 - 8.5e-54 182.5 0.0 1.1e-53 182.2 0.0 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family Peripla_BP_6 PF13458.6 AHV94469.1 - 6.3e-16 59.0 4.3 7.9e-16 58.6 4.3 1.0 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 AHV94469.1 - 0.043 12.8 0.1 0.057 12.4 0.1 1.2 1 0 0 1 1 1 0 Periplasmic binding protein domain ABC_tran PF00005.27 AHV94470.1 - 1.7e-28 99.9 0.0 2.4e-28 99.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 AHV94470.1 - 9.8e-11 42.0 2.3 1.4e-05 25.1 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system MukB PF04310.12 AHV94470.1 - 0.00027 20.8 0.0 0.0005 19.9 0.0 1.4 1 0 0 1 1 1 1 MukB N-terminal AAA_29 PF13555.6 AHV94470.1 - 0.0017 18.1 0.1 0.0042 16.8 0.1 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 AHV94470.1 - 0.0018 18.7 0.7 0.0042 17.5 0.7 1.6 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 AHV94470.1 - 0.0026 17.7 0.0 0.0074 16.2 0.0 1.7 1 1 0 1 1 1 1 RsgA GTPase SMC_N PF02463.19 AHV94470.1 - 0.004 16.6 0.2 0.074 12.5 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 AHV94470.1 - 0.0078 16.7 0.0 0.013 16.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 AHV94470.1 - 0.0085 15.8 0.2 0.017 14.8 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_27 PF13514.6 AHV94470.1 - 0.011 15.4 0.1 0.03 13.9 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.6 AHV94470.1 - 0.011 15.5 0.0 0.046 13.4 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain DUF2813 PF11398.8 AHV94470.1 - 0.014 14.6 0.0 0.02 14.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2813) WTX PF09422.10 AHV94470.1 - 0.095 11.8 0.0 0.096 11.7 0.0 1.1 1 0 0 1 1 1 0 WTX protein MMR_HSR1 PF01926.23 AHV94470.1 - 0.1 12.7 0.0 0.23 11.5 0.1 1.5 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_25 PF13481.6 AHV94470.1 - 0.14 11.7 1.0 0.32 10.6 0.9 1.9 1 1 0 1 1 1 0 AAA domain DDE_Tnp_ISL3 PF01610.17 AHV94471.1 - 1.9e-43 148.9 1.1 3.2e-43 148.2 0.2 1.7 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV94471.1 - 1.4e-11 43.6 0.1 3.4e-11 42.4 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV94471.1 - 3.7e-09 37.1 11.2 1.1e-08 35.6 11.2 1.9 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV94471.1 - 0.0051 16.8 0.2 0.015 15.3 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain NOB1_Zn_bind PF08772.11 AHV94471.1 - 0.016 15.3 0.2 1.2 9.4 0.0 2.5 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like Zn-ribbon_8 PF09723.10 AHV94471.1 - 6.4 7.0 6.7 26 5.0 0.1 3.1 3 0 0 3 3 3 0 Zinc ribbon domain ABC_tran PF00005.27 AHV94473.1 - 1.1e-29 103.7 0.0 1.8e-29 103.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 AHV94473.1 - 2.2e-07 31.0 0.3 7.2e-05 22.7 0.2 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 AHV94473.1 - 0.002 17.8 0.0 0.0046 16.7 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 AHV94473.1 - 0.0061 16.3 0.0 0.042 13.6 0.0 1.9 1 1 0 2 2 2 1 AAA ATPase domain MMR_HSR1 PF01926.23 AHV94473.1 - 0.016 15.2 0.0 0.033 14.3 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 AHV94473.1 - 0.018 14.9 0.1 0.039 13.9 0.0 1.5 2 0 0 2 2 2 0 RsgA GTPase AAA_16 PF13191.6 AHV94473.1 - 0.028 14.8 0.0 0.059 13.8 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.6 AHV94473.1 - 0.031 14.5 0.0 0.12 12.7 0.0 2.0 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.6 AHV94473.1 - 0.12 12.8 0.0 0.17 12.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 AHV94473.1 - 0.15 11.9 0.0 0.47 10.4 0.0 1.7 2 0 0 2 2 2 0 Rad17 P-loop domain Ribosomal_S6 PF01250.17 AHV94474.1 - 1.6e-28 98.8 0.0 2.2e-28 98.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S6 Transketolase_N PF00456.21 AHV94475.1 - 1e-144 481.6 0.1 1.5e-144 481.1 0.1 1.2 1 0 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain Transket_pyr PF02779.24 AHV94475.1 - 4e-44 150.4 1.2 7.9e-44 149.4 0.0 2.2 2 0 0 2 2 2 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 AHV94475.1 - 6.3e-19 68.1 0.4 1.5e-18 66.9 0.1 1.8 2 0 0 2 2 2 1 Transketolase, C-terminal domain E1_dh PF00676.20 AHV94475.1 - 1.7e-06 27.2 0.0 5.4e-06 25.6 0.0 1.7 2 0 0 2 2 2 1 Dehydrogenase E1 component DXP_synthase_N PF13292.6 AHV94475.1 - 9.8e-06 25.0 0.0 0.013 14.7 0.0 2.2 1 1 1 2 2 2 2 1-deoxy-D-xylulose-5-phosphate synthase TPP_enzyme_C PF02775.21 AHV94475.1 - 0.0012 18.7 1.6 0.0012 18.7 1.6 2.7 2 1 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ECH_1 PF00378.20 AHV94476.1 - 2e-57 194.4 0.0 2.2e-57 194.2 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 AHV94476.1 - 8.4e-34 117.6 0.6 1.8e-27 96.7 0.0 2.0 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase PCMT PF01135.19 AHV94477.1 - 5.1e-58 196.3 0.0 6.6e-58 195.9 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_25 PF13649.6 AHV94477.1 - 4.1e-05 24.2 0.0 6.7e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 AHV94477.1 - 9.5e-05 22.2 0.0 0.00015 21.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 AHV94477.1 - 0.00067 19.6 0.0 0.0011 19.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 AHV94477.1 - 0.00067 18.8 0.0 0.001 18.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_11 PF08241.12 AHV94477.1 - 0.0026 18.4 0.0 0.0056 17.3 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 AHV94477.1 - 0.0029 17.2 0.0 0.0048 16.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_24 PF13578.6 AHV94477.1 - 0.0079 17.2 0.0 0.016 16.2 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain TrmK PF04816.12 AHV94477.1 - 0.0099 15.4 0.0 0.013 15.0 0.0 1.2 1 0 0 1 1 1 1 tRNA (adenine(22)-N(1))-methyltransferase Methyltransf_15 PF09445.10 AHV94477.1 - 0.025 14.1 0.0 0.035 13.7 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase DUF5596 PF18082.1 AHV94477.1 - 0.041 13.7 0.1 0.17 11.8 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF5596) Methyltransf_32 PF13679.6 AHV94477.1 - 0.085 12.8 0.0 0.13 12.3 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_23 PF13489.6 AHV94477.1 - 0.1 12.4 0.0 0.22 11.3 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase domain Met_10 PF02475.16 AHV94477.1 - 0.19 11.5 0.0 0.32 10.7 0.0 1.3 1 0 0 1 1 1 0 Met-10+ like-protein SAM_MT PF04445.13 AHV94477.1 - 0.21 11.0 1.0 0.38 10.1 0.1 1.9 2 1 0 2 2 2 0 Putative SAM-dependent methyltransferase DREV PF05219.12 AHV94477.1 - 0.24 10.5 0.0 0.36 9.9 0.0 1.2 1 0 0 1 1 1 0 DREV methyltransferase HemY_N PF07219.13 AHV94478.1 - 4.6e-28 97.5 5.8 4.6e-28 97.5 5.8 4.3 3 2 1 4 4 4 1 HemY protein N-terminus TPR_7 PF13176.6 AHV94478.1 - 0.0035 17.3 3.9 11 6.3 0.1 4.2 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_2 PF07719.17 AHV94478.1 - 0.0052 16.8 10.8 0.89 9.8 0.0 5.3 6 0 0 6 6 6 2 Tetratricopeptide repeat TPR_12 PF13424.6 AHV94478.1 - 0.0098 16.2 18.0 0.39 11.0 1.2 5.1 4 2 1 5 5 5 3 Tetratricopeptide repeat TPR_1 PF00515.28 AHV94478.1 - 0.086 12.7 1.1 6.8 6.7 0.0 3.8 5 0 0 5 5 5 0 Tetratricopeptide repeat DUF2496 PF10689.9 AHV94478.1 - 0.11 12.3 0.0 0.32 10.8 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF2496) TPR_19 PF14559.6 AHV94478.1 - 0.14 12.6 19.3 0.13 12.7 1.0 4.6 2 2 3 5 5 5 0 Tetratricopeptide repeat LapA_dom PF06305.11 AHV94478.1 - 0.46 10.3 5.3 2.5 8.0 5.3 2.2 1 1 0 1 1 1 0 Lipopolysaccharide assembly protein A domain ECH_1 PF00378.20 AHV94479.1 - 2.7e-41 141.5 0.0 3.3e-41 141.3 0.0 1.1 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 AHV94479.1 - 2.3e-16 60.2 0.0 7.3e-16 58.6 0.0 1.7 1 1 0 1 1 1 1 Enoyl-CoA hydratase/isomerase SBP_bac_3 PF00497.20 AHV94480.1 - 7.4e-73 244.7 2.7 8.5e-73 244.5 2.7 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Lig_chan-Glu_bd PF10613.9 AHV94480.1 - 2.4e-14 53.5 0.0 1e-12 48.2 0.0 2.3 1 1 0 1 1 1 1 Ligated ion channel L-glutamate- and glycine-binding site NMT1 PF09084.11 AHV94480.1 - 6.3e-06 26.3 0.2 9.6e-05 22.4 0.2 2.4 1 1 1 2 2 2 1 NMT1/THI5 like HRXXH PF13933.6 AHV94480.1 - 0.021 14.4 0.1 3.5 7.1 0.0 2.2 2 0 0 2 2 2 0 Putative peptidase family LysR_substrate PF03466.20 AHV94481.1 - 5.1e-11 42.3 0.9 5.2e-11 42.3 0.9 1.0 1 0 0 1 1 1 1 LysR substrate binding domain Abhydrolase_6 PF12697.7 AHV94482.1 - 1.5e-17 65.0 10.8 1.7e-17 64.8 10.8 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 AHV94482.1 - 9e-13 48.5 0.1 2.2e-10 40.6 0.4 2.1 1 1 0 2 2 2 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 AHV94482.1 - 0.0003 20.1 0.0 0.00078 18.8 0.0 1.6 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Chlorophyllase2 PF12740.7 AHV94482.1 - 0.0044 16.0 2.0 0.11 11.4 0.2 3.1 2 2 1 3 3 3 1 Chlorophyllase enzyme DUF2974 PF11187.8 AHV94482.1 - 0.007 15.9 0.0 0.019 14.5 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF2974) Esterase PF00756.20 AHV94482.1 - 0.015 14.9 0.0 0.026 14.1 0.0 1.5 1 0 0 1 1 1 0 Putative esterase Abhydrolase_3 PF07859.13 AHV94482.1 - 0.02 14.8 0.0 0.31 10.9 0.0 2.1 2 0 0 2 2 2 0 alpha/beta hydrolase fold IstB_IS21 PF01695.17 AHV94483.1 - 5.2e-63 212.0 0.1 6.8e-63 211.6 0.1 1.1 1 0 0 1 1 1 1 IstB-like ATP binding protein Bac_DnaA PF00308.18 AHV94483.1 - 2.5e-07 30.8 0.0 3.4e-07 30.3 0.0 1.1 1 0 0 1 1 1 1 Bacterial dnaA protein AAA PF00004.29 AHV94483.1 - 2.1e-06 28.2 0.0 3.7e-06 27.4 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 AHV94483.1 - 2.8e-06 27.8 0.4 0.00017 22.0 0.4 2.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 AHV94483.1 - 4e-05 23.9 0.0 0.023 15.0 0.0 2.5 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.14 AHV94483.1 - 5.2e-05 23.3 0.0 0.00018 21.5 0.0 1.8 1 1 1 2 2 2 1 AAA domain (dynein-related subfamily) RsgA_GTPase PF03193.16 AHV94483.1 - 0.00011 22.2 0.0 0.00027 20.9 0.0 1.7 2 0 0 2 2 2 1 RsgA GTPase AAA_14 PF13173.6 AHV94483.1 - 0.0003 20.8 0.0 0.00069 19.7 0.0 1.6 2 0 0 2 2 2 1 AAA domain PhoH PF02562.16 AHV94483.1 - 0.002 17.6 0.1 0.0033 16.9 0.1 1.4 1 0 0 1 1 1 1 PhoH-like protein AAA_28 PF13521.6 AHV94483.1 - 0.0051 17.1 0.0 0.0088 16.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain TniB PF05621.11 AHV94483.1 - 0.0091 15.4 0.0 4.4 6.7 0.0 2.3 1 1 1 2 2 2 2 Bacterial TniB protein ABC_tran PF00005.27 AHV94483.1 - 0.0095 16.5 0.0 0.026 15.0 0.0 1.6 1 1 0 1 1 1 1 ABC transporter AAA_18 PF13238.6 AHV94483.1 - 0.011 16.3 0.0 0.025 15.1 0.0 1.9 1 1 0 1 1 1 0 AAA domain Lon_2 PF13337.6 AHV94483.1 - 0.015 13.9 0.0 0.022 13.3 0.0 1.2 1 0 0 1 1 1 0 Putative ATP-dependent Lon protease AAA_33 PF13671.6 AHV94483.1 - 0.016 15.3 0.0 0.037 14.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 AHV94483.1 - 0.02 14.6 0.0 0.043 13.5 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain RNA_helicase PF00910.22 AHV94483.1 - 0.022 15.2 0.0 0.049 14.0 0.0 1.7 1 1 0 1 1 1 0 RNA helicase AAA_7 PF12775.7 AHV94483.1 - 0.027 14.0 0.0 0.094 12.2 0.0 1.9 2 1 0 2 2 2 0 P-loop containing dynein motor region Sigma54_activat PF00158.26 AHV94483.1 - 0.04 13.6 0.0 0.1 12.3 0.0 1.8 1 1 0 1 1 1 0 Sigma-54 interaction domain AAA_17 PF13207.6 AHV94483.1 - 0.041 14.3 0.0 0.19 12.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain DUF3572 PF12096.8 AHV94483.1 - 0.046 13.9 0.8 0.13 12.5 0.3 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3572) AAA_25 PF13481.6 AHV94483.1 - 0.058 13.0 0.0 0.36 10.4 0.0 2.0 1 1 1 2 2 2 0 AAA domain AAA_2 PF07724.14 AHV94483.1 - 0.078 13.1 0.0 0.18 11.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) Viral_helicase1 PF01443.18 AHV94483.1 - 0.12 12.1 0.0 0.17 11.6 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase NACHT PF05729.12 AHV94483.1 - 0.12 12.3 0.1 0.33 10.9 0.0 1.8 1 1 0 1 1 1 0 NACHT domain AAA_10 PF12846.7 AHV94483.1 - 0.14 11.1 0.0 0.2 10.5 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain AAA_24 PF13479.6 AHV94483.1 - 0.14 11.8 0.0 0.28 10.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain Roc PF08477.13 AHV94483.1 - 0.15 12.3 0.0 0.31 11.3 0.0 1.6 1 1 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase SO_alpha_A3 PF17806.1 AHV94485.1 - 2.3e-14 53.5 0.0 4.6e-13 49.3 0.0 2.3 2 1 0 2 2 2 1 Sarcosine oxidase A3 domain Fer2_BFD PF04324.15 AHV94485.1 - 1.9e-12 47.3 1.0 2.7e-12 46.8 1.0 1.2 1 0 0 1 1 1 1 BFD-like [2Fe-2S] binding domain DUF5320 PF17253.2 AHV94485.1 - 0.28 12.2 4.4 16 6.7 1.2 2.3 2 0 0 2 2 2 0 Family of unknown function (DUF5320) MafB19-deam PF14437.6 AHV94486.1 - 4.9e-29 100.9 0.0 5.5e-29 100.7 0.0 1.0 1 0 0 1 1 1 1 MafB19-like deaminase dCMP_cyt_deam_1 PF00383.23 AHV94486.1 - 8.7e-24 83.3 0.7 1.4e-23 82.7 0.1 1.6 2 0 0 2 2 2 1 Cytidine and deoxycytidylate deaminase zinc-binding region Bd3614-deam PF14439.6 AHV94486.1 - 0.00017 21.7 1.5 0.012 15.7 0.3 2.2 1 1 1 2 2 2 2 Bd3614-like deaminase SNAD4 PF18750.1 AHV94486.1 - 0.0039 17.3 0.0 0.011 15.8 0.0 1.7 2 0 0 2 2 2 1 Secreted Novel AID/APOBEC-like Deaminase 4 Inv-AAD PF18785.1 AHV94486.1 - 0.021 14.7 0.1 0.049 13.5 0.1 1.6 1 1 0 1 1 1 0 Invertebrate-AID/APOBEC-deaminase APOBEC2 PF18772.1 AHV94486.1 - 0.1 12.6 0.0 0.15 12.1 0.0 1.2 1 0 0 1 1 1 0 APOBEC2 NAD2 PF18782.1 AHV94486.1 - 0.2 11.8 0.0 0.34 11.0 0.0 1.4 2 0 0 2 2 2 0 Novel AID APOBEC clade 2 APOBEC_N PF08210.11 AHV94486.1 - 0.22 11.4 0.0 0.37 10.7 0.0 1.4 2 0 0 2 2 2 0 APOBEC-like N-terminal domain Tautomerase PF01361.21 AHV94487.1 - 1.1e-21 76.6 0.0 2.4e-10 40.2 0.0 2.0 2 0 0 2 2 2 2 Tautomerase enzyme Tautomerase_2 PF14552.6 AHV94487.1 - 3.1e-12 46.4 0.0 7.7e-08 32.3 0.0 2.0 1 1 1 2 2 2 2 Tautomerase enzyme PAS_8 PF13188.7 AHV94487.1 - 0.0037 17.2 0.1 0.011 15.8 0.0 1.7 2 0 0 2 2 2 1 PAS domain MIF PF01187.18 AHV94487.1 - 0.0042 17.4 0.1 0.0052 17.1 0.1 1.1 1 0 0 1 1 1 1 Macrophage migration inhibitory factor (MIF) CHMI PF02962.15 AHV94487.1 - 0.054 13.8 0.0 0.068 13.5 0.0 1.1 1 0 0 1 1 1 0 5-carboxymethyl-2-hydroxymuconate isomerase PqiA PF04403.13 AHV94488.1 - 1.3e-20 73.8 5.2 1.6e-20 73.5 5.2 1.0 1 0 0 1 1 1 1 Paraquat-inducible protein A LysR_substrate PF03466.20 AHV94490.1 - 5.1e-35 120.7 8.1 5.1e-35 120.7 8.1 1.6 2 0 0 2 2 2 1 LysR substrate binding domain HTH_1 PF00126.27 AHV94490.1 - 8.2e-17 60.9 1.1 8.2e-17 60.9 1.1 2.0 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family TctB PF07331.11 AHV94491.1 - 9.7e-21 74.5 17.0 1.1e-20 74.2 17.0 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctB family DUF4191 PF13829.6 AHV94491.1 - 3.1 7.1 4.7 5.9 6.2 4.7 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) Arginase PF00491.21 AHV94492.1 - 7.6e-56 189.7 0.4 8.7e-56 189.5 0.4 1.0 1 0 0 1 1 1 1 Arginase family RACo_linker PF17650.1 AHV94492.1 - 0.074 12.9 0.1 0.19 11.6 0.1 1.6 1 0 0 1 1 1 0 RACo linker region DUF4424 PF14415.6 AHV94493.1 - 0.12 11.6 0.1 0.13 11.5 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4424) NAD_binding_8 PF13450.6 AHV94494.1 - 3e-16 59.4 3.3 3.2e-15 56.1 3.3 1.9 1 1 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Amino_oxidase PF01593.24 AHV94494.1 - 7.7e-10 38.6 0.2 8.4e-10 38.5 0.2 1.1 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase DAO PF01266.24 AHV94494.1 - 2.2e-08 34.1 1.2 2.3e-08 34.0 1.2 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 AHV94494.1 - 1.9e-07 30.6 1.8 2.1e-07 30.4 1.8 1.0 1 0 0 1 1 1 1 FAD binding domain Thi4 PF01946.17 AHV94494.1 - 7.5e-07 28.6 0.3 8.6e-07 28.4 0.3 1.1 1 0 0 1 1 1 1 Thi4 family FAD_binding_3 PF01494.19 AHV94494.1 - 1.4e-05 24.5 0.3 1.7e-05 24.3 0.3 1.1 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 AHV94494.1 - 0.00089 18.6 0.2 0.001 18.4 0.2 1.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 AHV94494.1 - 0.0012 18.2 0.2 0.0012 18.1 0.2 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 AHV94494.1 - 0.0013 18.8 0.0 0.0014 18.6 0.0 1.1 1 0 0 1 1 1 1 FAD-NAD(P)-binding FAD_oxidored PF12831.7 AHV94494.1 - 0.0028 17.1 2.3 0.0028 17.1 2.3 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 AHV94494.1 - 0.0032 16.2 0.3 0.0032 16.2 0.3 1.0 1 0 0 1 1 1 1 HI0933-like protein GIDA PF01134.22 AHV94494.1 - 0.0059 15.7 1.5 0.0059 15.7 1.5 1.1 1 0 0 1 1 1 1 Glucose inhibited division protein A Pyr_redox PF00070.27 AHV94494.1 - 0.012 16.2 0.2 0.013 16.0 0.2 1.1 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.16 AHV94494.1 - 0.015 15.0 0.2 0.017 14.8 0.2 1.2 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA UPF0227 PF05728.12 AHV94494.1 - 0.019 14.9 0.0 0.021 14.8 0.0 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0227) Trp_halogenase PF04820.14 AHV94494.1 - 0.019 13.8 0.2 0.022 13.6 0.2 1.1 1 0 0 1 1 1 0 Tryptophan halogenase AlaDh_PNT_C PF01262.21 AHV94494.1 - 0.056 12.7 0.3 0.059 12.7 0.3 1.1 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain ThiF PF00899.21 AHV94494.1 - 0.08 12.3 0.0 0.11 11.9 0.0 1.1 1 0 0 1 1 1 0 ThiF family Glu_dehyd_C PF16912.5 AHV94494.1 - 0.13 11.7 0.0 0.13 11.7 0.0 1.1 1 0 0 1 1 1 0 Glucose dehydrogenase C-terminus Shikimate_DH PF01488.20 AHV94494.1 - 0.18 11.8 0.0 0.2 11.7 0.0 1.1 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase HD_3 PF13023.6 AHV94495.1 - 7e-50 169.2 0.0 8.8e-50 168.8 0.0 1.1 1 0 0 1 1 1 1 HD domain HD_2 PF12917.7 AHV94495.1 - 3.7e-13 49.6 0.0 6e-13 48.9 0.0 1.3 1 0 0 1 1 1 1 HD containing hydrolase-like enzyme ABC_tran PF00005.27 AHV94495.1 - 2.5e-05 24.8 0.0 5.3e-05 23.8 0.0 1.5 1 0 0 1 1 1 1 ABC transporter HD PF01966.22 AHV94495.1 - 0.016 15.4 2.3 0.016 15.4 2.3 2.1 2 1 0 2 2 2 0 HD domain AAA_29 PF13555.6 AHV94495.1 - 0.2 11.4 0.3 0.52 10.1 0.0 1.8 2 0 0 2 2 2 0 P-loop containing region of AAA domain YdjM PF04307.14 AHV94496.1 - 8.8e-22 77.2 9.6 9.6e-22 77.1 9.6 1.0 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase Lum_binding PF00677.17 AHV94497.1 - 2.3e-39 133.3 1.3 3.5e-22 78.2 0.1 2.1 2 0 0 2 2 2 2 Lumazine binding domain HTH_25 PF13413.6 AHV94498.1 - 6.1e-21 74.0 0.1 8.9e-21 73.5 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 AHV94498.1 - 5.4e-08 33.1 1.3 1.6e-07 31.6 1.3 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 AHV94498.1 - 7.6e-07 29.1 0.0 9.8e-07 28.7 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 AHV94498.1 - 0.14 12.3 0.1 0.24 11.5 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix PDH_E1_M PF17831.1 AHV94499.1 - 5.5e-115 382.7 0.2 7.9e-115 382.2 0.2 1.2 1 0 0 1 1 1 1 Pyruvate dehydrogenase E1 component middle domain Transketolase_N PF00456.21 AHV94499.1 - 8.2e-15 54.6 0.0 8.7e-09 34.8 0.0 2.4 2 0 0 2 2 2 2 Transketolase, thiamine diphosphate binding domain PALP PF00291.25 AHV94500.1 - 4.4e-80 269.2 2.2 5.3e-80 269.0 2.2 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Thr_dehydrat_C PF00585.18 AHV94500.1 - 1.4e-53 178.7 0.0 8.3e-28 96.0 0.0 2.4 2 0 0 2 2 2 2 C-terminal regulatory domain of Threonine dehydratase Integrin_b_cyt PF08725.11 AHV94500.1 - 0.013 15.1 0.1 0.025 14.2 0.1 1.4 1 0 0 1 1 1 0 Integrin beta cytoplasmic domain HU-HIG PF18291.1 AHV94500.1 - 0.097 12.8 0.0 1.2 9.3 0.0 2.2 2 0 0 2 2 2 0 HU domain fused to wHTH, Ig, or Glycine-rich motif RcnB PF11776.8 AHV94501.1 - 3e-20 72.0 1.0 3.3e-20 71.9 1.0 1.0 1 0 0 1 1 1 1 Nickel/cobalt transporter regulator Ldh_2 PF02615.14 AHV94502.1 - 1.1e-107 360.1 3.6 1.3e-107 359.8 3.6 1.0 1 0 0 1 1 1 1 Malate/L-lactate dehydrogenase BPL_LplA_LipB PF03099.19 AHV94503.1 - 9.8e-09 35.2 0.0 1.9e-08 34.3 0.0 1.5 1 1 0 1 1 1 1 Biotin/lipoate A/B protein ligase family TctC PF03401.14 AHV94504.1 - 6.9e-75 251.6 0.1 8.1e-75 251.4 0.1 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor Rib_5-P_isom_A PF06026.14 AHV94505.1 - 2e-57 193.6 0.0 3.1e-57 192.9 0.0 1.3 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.22 AHV94505.1 - 0.035 14.0 0.0 2.1 8.3 0.0 2.2 2 0 0 2 2 2 0 DeoR C terminal sensor domain rve PF00665.26 AHV94506.1 - 1e-13 51.5 0.0 3.6e-12 46.5 0.0 2.1 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 AHV94506.1 - 4.5e-12 45.9 8.6 9.2e-12 44.9 8.6 1.5 1 0 0 1 1 1 1 HTH-like domain Rhomboid_SP PF12595.8 AHV94506.1 - 0.023 14.1 0.2 1.2 8.4 0.0 2.2 1 1 0 2 2 2 0 Rhomboid serine protease YbgT_YccB PF08173.11 AHV94508.1 - 1.9e-16 59.8 8.8 2.1e-16 59.7 8.8 1.0 1 0 0 1 1 1 1 Membrane bound YbgT-like protein PRAI PF00697.22 AHV94509.1 - 4.3e-18 65.8 0.0 5e-18 65.6 0.0 1.0 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase HEPN_SAV_6107 PF18726.1 AHV94509.1 - 0.0064 17.0 0.2 2.2 8.9 0.1 2.5 2 1 0 2 2 2 2 SAV_6107-like HEPN NAD_kinase PF01513.21 AHV94510.1 - 8.2e-56 189.3 0.1 9.6e-56 189.1 0.1 1.0 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 AHV94510.1 - 0.0099 15.5 0.1 0.016 14.8 0.1 1.3 1 0 0 1 1 1 1 Diacylglycerol kinase catalytic domain DUF3924 PF13062.6 AHV94511.1 - 0.074 13.0 0.3 1.9 8.5 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3924) MarR PF01047.22 AHV94512.1 - 8.7e-07 28.8 2.0 1.6e-06 27.9 1.8 1.6 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.6 AHV94512.1 - 0.0013 19.2 0.6 0.0026 18.2 0.6 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.7 AHV94512.1 - 0.0084 16.0 1.9 0.013 15.4 0.8 1.9 2 0 0 2 2 2 1 MarR family FMN_dh PF01070.18 AHV94513.1 - 3.3e-121 404.6 0.8 3.8e-121 404.4 0.8 1.0 1 0 0 1 1 1 1 FMN-dependent dehydrogenase IMPDH PF00478.25 AHV94513.1 - 0.00011 21.4 0.7 0.00022 20.3 0.4 1.7 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain ThiG PF05690.14 AHV94513.1 - 0.0016 17.8 4.3 3.5 6.9 0.2 3.6 3 1 0 4 4 4 3 Thiazole biosynthesis protein ThiG NMO PF03060.15 AHV94513.1 - 0.059 12.8 5.1 0.021 14.3 2.3 1.6 2 0 0 2 2 2 0 Nitronate monooxygenase Glu_synthase PF01645.17 AHV94513.1 - 0.061 12.4 1.4 0.079 12.1 0.1 1.7 2 0 0 2 2 2 0 Conserved region in glutamate synthase Isochorismatase PF00857.20 AHV94514.1 - 2.7e-27 96.0 0.0 3.4e-27 95.8 0.0 1.1 1 0 0 1 1 1 1 Isochorismatase family DDE_Tnp_ISL3 PF01610.17 AHV94515.1 - 6.7e-65 219.2 1.2 9.3e-65 218.7 0.3 1.6 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV94515.1 - 1.4e-11 43.6 0.1 3.6e-11 42.3 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV94515.1 - 5.3e-09 36.6 11.2 1.1e-08 35.6 11.2 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV94515.1 - 0.0056 16.7 0.2 0.016 15.3 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain NOB1_Zn_bind PF08772.11 AHV94515.1 - 0.017 15.2 0.2 1.2 9.3 0.0 2.5 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like SLT_L PF14718.6 AHV94515.1 - 0.023 14.8 1.3 0.023 14.8 1.3 1.8 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain zf-IS66 PF13005.7 AHV94515.1 - 8.2 6.9 9.6 3.6 8.1 6.6 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 GGDEF PF00990.21 AHV94516.1 - 2e-38 131.7 0.0 2.6e-38 131.3 0.0 1.1 1 0 0 1 1 1 1 Diguanylate cyclase, GGDEF domain GGDEF_2 PF17853.1 AHV94516.1 - 0.0004 20.6 0.2 0.0012 19.0 0.2 1.9 1 1 1 2 2 2 1 GGDEF-like domain Guanylate_kin PF00625.21 AHV94517.1 - 4.3e-45 153.6 0.0 4.9e-45 153.4 0.0 1.0 1 0 0 1 1 1 1 Guanylate kinase AAA_33 PF13671.6 AHV94517.1 - 9.2e-06 25.9 0.0 3.2e-05 24.1 0.0 1.8 1 1 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.23 AHV94517.1 - 0.0025 17.9 0.0 0.005 16.9 0.0 1.4 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_16 PF13191.6 AHV94517.1 - 0.003 17.9 0.1 0.0039 17.6 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain ABC_tran PF00005.27 AHV94517.1 - 0.0038 17.8 0.0 0.0066 17.0 0.0 1.3 1 1 0 1 1 1 1 ABC transporter AAA_22 PF13401.6 AHV94517.1 - 0.012 15.9 0.0 0.022 15.0 0.0 1.5 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 AHV94517.1 - 0.014 15.3 0.0 0.021 14.7 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase Viral_helicase1 PF01443.18 AHV94517.1 - 0.18 11.5 0.0 0.26 11.0 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Acyl-CoA_dh_N PF02771.16 AHV94518.1 - 5.8e-21 75.3 0.0 6.9e-21 75.0 0.0 1.0 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyltransferase PF01553.21 AHV94519.1 - 5.5e-19 68.1 0.0 7.3e-19 67.7 0.0 1.2 1 0 0 1 1 1 1 Acyltransferase Malate_synthase PF01274.22 AHV94520.1 - 1.4e-172 574.7 0.0 1.6e-172 574.5 0.0 1.0 1 0 0 1 1 1 1 Malate synthase LysE PF01810.18 AHV94521.1 - 3e-37 128.0 16.7 3.7e-37 127.7 16.7 1.1 1 0 0 1 1 1 1 LysE type translocator TerC PF03741.16 AHV94521.1 - 3.7 7.2 12.0 0.077 12.7 2.4 2.5 1 1 0 2 2 2 0 Integral membrane protein TerC family ABC1 PF03109.16 AHV94522.1 - 6.9e-34 116.6 0.0 5.3e-33 113.7 0.0 2.2 2 0 0 2 2 2 1 ABC1 family Nucleocap_ssRNA PF11128.8 AHV94522.1 - 0.1 12.3 0.0 0.17 11.6 0.0 1.2 1 0 0 1 1 1 0 Plant viral coat protein nucleocapsid DDE_Tnp_ISL3 PF01610.17 AHV94523.1 - 2.3e-30 106.1 0.9 5.6e-30 104.8 0.2 1.8 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV94523.1 - 8.3e-12 44.3 0.1 2.1e-11 43.1 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV94523.1 - 3.4e-09 37.2 11.2 6.5e-09 36.3 11.2 1.5 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV94523.1 - 0.0029 17.6 0.2 0.0096 16.0 0.0 1.9 2 0 0 2 2 2 1 Rhomboid N-terminal domain NOB1_Zn_bind PF08772.11 AHV94523.1 - 0.0072 16.5 0.2 0.76 10.0 0.0 2.4 2 0 0 2 2 2 1 Nin one binding (NOB1) Zn-ribbon like Zn-ribbon_8 PF09723.10 AHV94523.1 - 0.41 10.8 2.7 17 5.6 0.1 2.6 2 0 0 2 2 2 0 Zinc ribbon domain zf-IS66 PF13005.7 AHV94523.1 - 0.5 10.8 6.2 1.6 9.2 6.2 1.9 1 0 0 1 1 1 0 zinc-finger binding domain of transposase IS66 Nudix_N_2 PF14803.6 AHV94523.1 - 0.61 10.1 5.1 10 6.2 0.2 2.9 2 0 0 2 2 2 0 Nudix N-terminal Mem_trans PF03547.18 AHV94524.1 - 3.1e-12 45.6 5.9 3.7e-12 45.4 5.9 1.0 1 0 0 1 1 1 1 Membrane transport protein SBF PF01758.16 AHV94524.1 - 0.17 11.5 8.7 0.17 11.6 8.0 1.3 1 1 0 1 1 1 0 Sodium Bile acid symporter family Fil_haemagg_2 PF13332.6 AHV94525.1 - 1.4e-31 110.0 66.0 5.5e-28 98.2 19.3 15.4 9 6 4 14 14 14 6 Hemagglutinin repeat Haemagg_act PF05860.13 AHV94525.1 - 4.3e-30 104.1 6.2 5.8e-29 100.4 6.2 3.3 1 0 0 1 1 1 1 haemagglutination activity domain Pirin_C_2 PF17954.1 AHV94525.1 - 0.4 10.9 5.4 12 6.1 0.0 5.3 5 0 0 5 5 5 0 Quercetinase C-terminal cupin domain Response_reg PF00072.24 AHV94526.1 - 2.9e-23 82.2 0.0 5.2e-23 81.4 0.0 1.4 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 AHV94526.1 - 7.6e-16 58.0 0.0 2.4e-15 56.4 0.0 1.8 2 0 0 2 2 2 1 Transcriptional regulatory protein, C terminal Flg_hook PF02120.16 AHV94526.1 - 0.0089 15.9 0.0 0.022 14.6 0.0 1.6 1 0 0 1 1 1 1 Flagellar hook-length control protein FliK Acyl-CoA_dh_N PF02771.16 AHV94528.1 - 1.1e-17 64.7 0.0 3.4e-17 63.1 0.0 1.8 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_1 PF00441.24 AHV94528.1 - 8.8e-15 55.2 2.2 1.7e-14 54.2 2.2 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 AHV94528.1 - 5.3e-12 45.8 0.0 1.5e-11 44.3 0.0 1.7 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, middle domain DUF1974 PF09317.11 AHV94528.1 - 1.4e-11 44.5 0.0 2.2e-11 43.9 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1974) Acyl-CoA_dh_2 PF08028.11 AHV94528.1 - 0.00091 19.5 0.5 0.0021 18.3 0.5 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain BLUF PF04940.12 AHV94529.1 - 1.1e-13 51.1 0.0 1.3e-13 50.9 0.0 1.0 1 0 0 1 1 1 1 Sensors of blue-light using FAD Ribosomal_S4 PF00163.19 AHV94530.1 - 4.3e-32 110.9 3.5 7.1e-32 110.2 3.5 1.4 1 0 0 1 1 1 1 Ribosomal protein S4/S9 N-terminal domain S4 PF01479.25 AHV94530.1 - 2e-16 59.4 0.0 3.7e-16 58.6 0.0 1.5 1 0 0 1 1 1 1 S4 domain Aldedh PF00171.22 AHV94531.1 - 4.8e-83 279.2 0.0 5.4e-83 279.1 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family DUF945 PF06097.11 AHV94533.1 - 3.4e-104 349.5 0.3 3.8e-104 349.4 0.3 1.0 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF945) Amidohydro_2 PF04909.14 AHV94534.1 - 2.2e-31 109.7 2.9 2.8e-31 109.4 2.9 1.1 1 0 0 1 1 1 1 Amidohydrolase RuvA_N PF01330.21 AHV94535.1 - 9.8e-22 76.8 0.1 2.5e-21 75.5 0.0 1.7 2 0 0 2 2 2 1 RuvA N terminal domain HHH_5 PF14520.6 AHV94535.1 - 9.6e-17 61.3 1.5 1.3e-16 60.9 0.4 1.8 2 0 0 2 2 1 1 Helix-hairpin-helix domain RuvA_C PF07499.13 AHV94535.1 - 3.1e-12 46.7 1.0 3.1e-12 46.7 1.0 1.7 2 0 0 2 2 2 1 RuvA, C-terminal domain HHH PF00633.23 AHV94535.1 - 3.7e-07 29.7 2.8 0.0042 16.9 0.1 3.1 3 0 0 3 3 3 2 Helix-hairpin-helix motif HHH_8 PF14716.6 AHV94535.1 - 0.0004 20.7 0.3 0.021 15.2 0.1 2.6 1 1 1 2 2 2 1 Helix-hairpin-helix domain 5_3_exonuc PF01367.20 AHV94535.1 - 0.0015 19.1 0.2 0.19 12.4 0.0 2.4 1 1 1 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold IMS_HHH PF11798.8 AHV94535.1 - 0.0022 18.2 0.4 0.023 15.0 0.0 2.8 3 0 0 3 3 3 1 IMS family HHH motif HHH_3 PF12836.7 AHV94535.1 - 0.0037 17.5 0.1 1 9.6 0.0 2.7 2 1 0 2 2 2 1 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.9 AHV94535.1 - 0.0063 16.3 0.0 3.6 7.5 0.0 2.4 2 0 0 2 2 2 2 Fingers domain of DNA polymerase lambda HHH_2 PF12826.7 AHV94535.1 - 0.0072 16.4 0.0 1.7 8.8 0.0 2.6 1 1 1 2 2 2 1 Helix-hairpin-helix motif Transposase_20 PF02371.16 AHV94535.1 - 0.018 15.3 0.2 0.65 10.3 0.0 2.3 2 0 0 2 2 2 0 Transposase IS116/IS110/IS902 family Cdd1 PF11731.8 AHV94535.1 - 0.078 13.2 0.0 1.3 9.4 0.0 2.6 2 1 1 3 3 3 0 Pathogenicity locus MarR_2 PF12802.7 AHV94536.1 - 2e-08 34.0 0.0 3.5e-08 33.2 0.0 1.4 1 0 0 1 1 1 1 MarR family GntR PF00392.21 AHV94536.1 - 0.00046 19.8 0.0 0.00099 18.7 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_11 PF08279.12 AHV94536.1 - 0.00064 19.6 0.0 0.0012 18.7 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_5 PF01022.20 AHV94536.1 - 0.00071 19.4 0.0 0.0013 18.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 AHV94536.1 - 0.00077 19.2 0.0 0.002 17.9 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 AHV94536.1 - 0.0011 18.9 0.0 0.0031 17.4 0.0 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 AHV94536.1 - 0.0014 18.5 0.0 0.0032 17.4 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain DprA_WH PF17782.1 AHV94536.1 - 0.0057 16.7 0.0 0.014 15.5 0.0 1.6 1 0 0 1 1 1 1 DprA winged helix domain SMC_ScpB PF04079.16 AHV94536.1 - 0.029 14.0 0.0 0.053 13.2 0.0 1.5 1 1 0 1 1 1 0 Segregation and condensation complex subunit ScpB MarR PF01047.22 AHV94536.1 - 0.043 13.8 0.0 0.083 12.8 0.0 1.5 1 0 0 1 1 1 0 MarR family Fe_dep_repress PF01325.19 AHV94536.1 - 0.044 14.0 0.0 0.076 13.2 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_20 PF12840.7 AHV94536.1 - 0.099 12.7 0.0 0.23 11.6 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Crp PF00325.20 AHV94536.1 - 0.12 12.1 0.0 0.29 10.8 0.0 1.7 2 0 0 2 2 2 0 Bacterial regulatory proteins, crp family HTH_1 PF00126.27 AHV94536.1 - 0.15 12.0 0.0 0.29 11.1 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family FCD PF07729.12 AHV94537.1 - 5.6e-23 81.7 11.0 1.1e-22 80.8 11.0 1.5 1 0 0 1 1 1 1 FCD domain GntR PF00392.21 AHV94537.1 - 2.6e-20 71.8 0.2 5.6e-20 70.8 0.2 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family Fe_dep_repress PF01325.19 AHV94537.1 - 7.5e-05 22.8 0.0 0.00015 21.9 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain DprA_WH PF17782.1 AHV94537.1 - 0.0013 18.8 1.9 0.007 16.5 0.4 2.6 2 0 0 2 2 2 1 DprA winged helix domain HTH_IclR PF09339.10 AHV94537.1 - 0.0016 18.2 0.2 0.0061 16.3 0.1 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain TrmB PF01978.19 AHV94537.1 - 0.0018 18.1 0.0 0.0032 17.3 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 AHV94537.1 - 0.02 14.8 2.4 0.026 14.4 0.1 2.3 3 0 0 3 3 3 0 MarR family HTH_Crp_2 PF13545.6 AHV94537.1 - 0.036 14.0 0.0 0.097 12.7 0.0 1.8 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_11 PF08279.12 AHV94537.1 - 0.038 14.0 0.0 0.081 12.9 0.0 1.5 1 0 0 1 1 1 0 HTH domain HTH_41 PF14502.6 AHV94537.1 - 0.045 13.4 0.0 0.08 12.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain MarR PF01047.22 AHV94537.1 - 0.07 13.1 0.0 0.26 11.2 0.0 1.9 2 0 0 2 2 2 0 MarR family LexA_DNA_bind PF01726.16 AHV94537.1 - 0.14 12.0 0.1 0.43 10.4 0.0 1.9 2 0 0 2 2 2 0 LexA DNA binding domain Rrf2 PF02082.20 AHV94537.1 - 0.18 12.1 0.2 0.59 10.5 0.0 1.9 2 0 0 2 2 2 0 Transcriptional regulator PNTB PF02233.16 AHV94538.1 - 1.5e-190 634.0 21.3 1.7e-190 633.9 21.3 1.0 1 0 0 1 1 1 1 NAD(P) transhydrogenase beta subunit TPP_enzyme_M PF00205.22 AHV94538.1 - 7.5e-05 22.5 0.3 0.00028 20.6 0.3 2.1 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain HTH_8 PF02954.19 AHV94539.1 - 8.3e-16 57.5 0.3 1.4e-15 56.8 0.3 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family HTH_30 PF13556.6 AHV94539.1 - 0.00074 19.3 0.0 0.0013 18.5 0.0 1.4 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain HTH_23 PF13384.6 AHV94539.1 - 0.012 15.3 0.0 0.019 14.8 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain DNA_gyraseB_C PF00986.21 AHV94539.1 - 0.02 15.0 0.1 0.025 14.8 0.1 1.2 1 0 0 1 1 1 0 DNA gyrase B subunit, carboxyl terminus Phage_NinH PF06322.11 AHV94539.1 - 0.039 13.8 0.0 0.93 9.4 0.0 2.1 2 0 0 2 2 2 0 Phage NinH protein HTH_28 PF13518.6 AHV94539.1 - 0.14 12.3 0.0 0.22 11.7 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Aminotran_4 PF01063.19 AHV94540.1 - 3.4e-05 23.8 0.0 5.1e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 Amino-transferase class IV Sigma70_r4_2 PF08281.12 AHV94541.1 - 2.8e-12 46.1 0.0 5e-12 45.3 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r2 PF04542.14 AHV94541.1 - 1.4e-09 37.5 1.5 2.4e-09 36.8 1.5 1.4 1 0 0 1 1 1 1 Sigma-70 region 2 Sigma70_r4 PF04545.16 AHV94541.1 - 3.8e-06 26.3 0.3 8e-06 25.3 0.0 1.7 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_ECF PF07638.11 AHV94541.1 - 4.4e-05 23.5 0.3 6.8e-05 22.8 0.3 1.3 1 0 0 1 1 1 1 ECF sigma factor HTH_24 PF13412.6 AHV94541.1 - 0.01 15.4 0.0 0.019 14.5 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_23 PF13384.6 AHV94541.1 - 0.046 13.5 0.0 0.12 12.2 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain Defensin_propep PF00879.18 AHV94542.1 - 0.11 12.8 4.0 0.14 12.4 4.0 1.2 1 0 0 1 1 1 0 Defensin propeptide Histidinol_dh PF00815.20 AHV94543.1 - 1.4e-165 551.3 1.3 1.7e-165 551.0 1.3 1.0 1 0 0 1 1 1 1 Histidinol dehydrogenase Glyoxalase_6 PF18029.1 AHV94543.1 - 0.034 14.9 2.0 1.9 9.3 1.5 2.5 2 0 0 2 2 2 0 Glyoxalase-like domain HTH_18 PF12833.7 AHV94544.1 - 3.5e-22 78.5 3.6 7.6e-22 77.4 3.6 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.23 AHV94544.1 - 5.6e-19 67.8 0.1 2.1e-12 46.8 0.1 2.5 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family AraC_binding PF02311.19 AHV94544.1 - 0.00031 20.7 1.5 0.00072 19.5 1.5 1.9 1 1 0 1 1 1 1 AraC-like ligand binding domain MHYT PF03707.16 AHV94545.1 - 9e-19 67.4 23.1 3.2e-18 65.7 7.5 2.9 3 1 0 3 3 3 2 Bacterial signalling protein N terminal repeat FtsX PF02687.21 AHV94545.1 - 0.051 14.1 3.5 0.051 14.1 3.5 2.3 2 1 0 2 2 2 0 FtsX-like permease family DUF5134 PF17197.4 AHV94545.1 - 0.38 10.7 20.7 0.65 9.9 20.6 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF5134) Popeye PF04831.13 AHV94545.1 - 1.4 9.1 3.4 1.1 9.4 1.6 1.7 1 1 1 2 2 2 0 Popeye protein conserved region FTR1 PF03239.14 AHV94545.1 - 1.8 7.7 12.6 0.35 10.0 8.1 2.0 1 1 0 1 1 1 0 Iron permease FTR1 family ABC2_membrane_5 PF13346.6 AHV94545.1 - 4 6.9 8.4 7.2 6.1 8.4 1.4 1 1 0 1 1 1 0 ABC-2 family transporter protein Vma12 PF11712.8 AHV94545.1 - 5.9 7.0 9.4 1.4 9.0 3.9 2.1 1 1 0 2 2 2 0 Endoplasmic reticulum-based factor for assembly of V-ATPase Peripla_BP_6 PF13458.6 AHV94546.1 - 2.5e-70 237.8 4.2 2.8e-70 237.7 4.2 1.0 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.28 AHV94546.1 - 7.9e-24 84.4 0.0 9.8e-24 84.1 0.0 1.0 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.6 AHV94546.1 - 6.4e-22 78.0 0.2 9.4e-22 77.5 0.2 1.2 1 0 0 1 1 1 1 Periplasmic binding protein domain Fe-ADH_2 PF13685.6 AHV94546.1 - 0.0098 15.6 0.1 0.017 14.8 0.1 1.3 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase RNA_pol_Rpc4 PF05132.14 AHV94547.1 - 4.8 7.6 7.4 9.9 6.6 4.5 2.1 2 0 0 2 2 2 0 RNA polymerase III RPC4 PT-VENN PF04829.13 AHV94547.1 - 6.4 6.9 8.4 21 5.3 3.7 2.7 2 0 0 2 2 2 0 Pre-toxin domain with VENN motif SpecificRecomb PF10136.9 AHV94548.1 - 1.2e-179 598.7 11.9 1.4e-179 598.5 11.9 1.0 1 0 0 1 1 1 1 Site-specific recombinase Plug PF07715.15 AHV94550.1 - 1.9e-20 73.5 0.1 4.7e-20 72.2 0.1 1.7 1 0 0 1 1 1 1 TonB-dependent Receptor Plug Domain STN PF07660.14 AHV94550.1 - 4.7e-06 26.3 0.0 1.1e-05 25.2 0.0 1.6 1 0 0 1 1 1 1 Secretin and TonB N terminus short domain TPR_14 PF13428.6 AHV94551.1 - 0.00057 20.5 26.1 0.0029 18.3 2.0 4.4 3 2 1 4 4 4 2 Tetratricopeptide repeat TPR_19 PF14559.6 AHV94551.1 - 0.0023 18.4 21.8 0.0068 16.9 0.5 3.4 1 1 3 4 4 4 2 Tetratricopeptide repeat Wzy_C_2 PF11846.8 AHV94551.1 - 0.0063 16.5 1.9 0.0063 16.5 1.9 2.8 2 1 1 3 3 3 2 Virulence factor membrane-bound polymerase, C-terminal TPR_12 PF13424.6 AHV94551.1 - 0.038 14.3 1.2 0.038 14.3 1.2 3.8 2 2 2 4 4 4 0 Tetratricopeptide repeat TPR_8 PF13181.6 AHV94551.1 - 0.22 11.9 3.2 3.3 8.1 0.3 3.1 2 1 1 3 3 3 0 Tetratricopeptide repeat ANAPC3 PF12895.7 AHV94551.1 - 0.29 11.4 5.9 4.2 7.7 0.1 3.1 1 1 1 3 3 3 0 Anaphase-promoting complex, cyclosome, subunit 3 CwsA PF10814.8 AHV94551.1 - 1.3 9.2 5.6 0.28 11.3 1.1 2.3 2 0 0 2 2 2 0 Cell wall synthesis protein CwsA TPR_16 PF13432.6 AHV94551.1 - 1.6 9.5 30.3 9.2 7.0 8.2 5.0 2 2 2 4 4 4 0 Tetratricopeptide repeat Mem_trans PF03547.18 AHV94552.1 - 6.4e-22 77.5 20.7 1.2e-16 60.2 10.2 2.1 1 1 1 2 2 2 2 Membrane transport protein DUF3852 PF12963.7 AHV94552.1 - 0.86 10.0 4.2 10 6.5 0.2 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3852) ABC_tran PF00005.27 AHV94553.1 - 6.8e-30 104.4 0.0 9.1e-30 104.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 AHV94553.1 - 9.2e-10 38.8 0.1 0.00074 19.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 AHV94553.1 - 0.00019 22.0 0.0 0.00031 21.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 AHV94553.1 - 0.00036 20.3 2.0 0.0013 18.5 2.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_27 PF13514.6 AHV94553.1 - 0.00044 19.9 0.0 0.00095 18.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 AHV94553.1 - 0.0012 18.5 0.0 0.0026 17.5 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 AHV94553.1 - 0.0014 18.4 0.0 0.0031 17.3 0.0 1.4 2 0 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.19 AHV94553.1 - 0.0015 18.0 0.1 0.22 10.9 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain BCA_ABC_TP_C PF12399.8 AHV94553.1 - 0.0063 16.4 0.0 0.016 15.1 0.0 1.7 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter DUF2813 PF11398.8 AHV94553.1 - 0.015 14.5 0.0 1.6 7.9 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2813) MukB PF04310.12 AHV94553.1 - 0.022 14.6 0.0 0.031 14.1 0.0 1.3 1 0 0 1 1 1 0 MukB N-terminal MMR_HSR1 PF01926.23 AHV94553.1 - 0.043 13.9 0.0 0.097 12.8 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase Mg_chelatase PF01078.21 AHV94553.1 - 0.045 13.1 0.2 0.4 10.0 0.1 2.0 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_19 PF13245.6 AHV94553.1 - 0.062 13.6 0.5 0.23 11.8 0.5 1.9 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 AHV94553.1 - 0.073 13.0 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_28 PF13521.6 AHV94553.1 - 0.073 13.3 0.1 0.17 12.1 0.1 1.6 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 AHV94553.1 - 0.093 13.1 0.3 0.18 12.1 0.3 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.6 AHV94553.1 - 0.12 12.6 0.4 0.33 11.2 0.4 1.8 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 AHV94553.1 - 0.16 12.2 0.3 0.96 9.7 0.3 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Oxidored_FMN PF00724.20 AHV94553.1 - 0.2 10.9 0.0 0.63 9.2 0.0 1.7 2 0 0 2 2 2 0 NADH:flavin oxidoreductase / NADH oxidase family rve_3 PF13683.6 AHV94554.1 - 8.3e-32 108.8 0.1 4.5e-31 106.4 0.0 2.2 2 0 0 2 2 2 1 Integrase core domain rve PF00665.26 AHV94554.1 - 4.2e-25 88.2 0.0 1.1e-23 83.7 0.0 2.2 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 AHV94554.1 - 1.8e-11 44.0 8.6 3.6e-11 43.0 8.6 1.5 1 0 0 1 1 1 1 HTH-like domain rve_2 PF13333.6 AHV94554.1 - 5.8e-07 29.6 0.0 1.3e-06 28.5 0.0 1.6 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AHV94554.1 - 0.00041 20.6 0.0 0.00091 19.5 0.0 1.6 1 1 1 2 2 2 1 DDE domain Rhomboid_SP PF12595.8 AHV94554.1 - 0.0081 15.6 0.3 2.2 7.6 0.0 2.3 1 1 0 2 2 2 2 Rhomboid serine protease DUF1780 PF08682.10 AHV94554.1 - 0.13 11.9 1.0 1.6 8.3 0.3 2.2 2 0 0 2 2 2 0 Putative endonuclease, protein of unknown function (DUF1780) ABC_tran PF00005.27 AHV94555.1 - 0.084 13.4 0.0 0.087 13.3 0.0 1.0 1 0 0 1 1 1 0 ABC transporter rve_3 PF13683.6 AHV94556.1 - 8.3e-32 108.8 0.1 4.5e-31 106.4 0.0 2.2 2 0 0 2 2 2 1 Integrase core domain rve PF00665.26 AHV94556.1 - 4.2e-25 88.2 0.0 1.1e-23 83.7 0.0 2.2 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 AHV94556.1 - 1.8e-11 44.0 8.6 3.6e-11 43.0 8.6 1.5 1 0 0 1 1 1 1 HTH-like domain rve_2 PF13333.6 AHV94556.1 - 5.8e-07 29.6 0.0 1.3e-06 28.5 0.0 1.6 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AHV94556.1 - 0.00041 20.6 0.0 0.00091 19.5 0.0 1.6 1 1 1 2 2 2 1 DDE domain Rhomboid_SP PF12595.8 AHV94556.1 - 0.0081 15.6 0.3 2.2 7.6 0.0 2.3 1 1 0 2 2 2 2 Rhomboid serine protease DUF1780 PF08682.10 AHV94556.1 - 0.13 11.9 1.0 1.6 8.3 0.3 2.2 2 0 0 2 2 2 0 Putative endonuclease, protein of unknown function (DUF1780) CTP_synth_N PF06418.14 AHV94557.1 - 6.3e-124 412.5 0.0 8.6e-124 412.1 0.0 1.2 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.28 AHV94557.1 - 2.2e-57 193.9 0.0 3.4e-57 193.3 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 AHV94557.1 - 5.4e-10 39.4 0.6 1.7e-08 34.5 0.1 3.0 3 1 0 3 3 3 1 Peptidase C26 CbiA PF01656.23 AHV94557.1 - 0.0027 17.8 0.0 0.0055 16.8 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain GATase_3 PF07685.14 AHV94557.1 - 0.14 11.8 0.0 0.28 10.8 0.0 1.5 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain IlvN PF07991.12 AHV94558.1 - 1.5e-74 249.1 4.7 2.1e-74 248.6 4.7 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain IlvC PF01450.19 AHV94558.1 - 2.1e-63 212.9 0.1 2.9e-63 212.5 0.1 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain 2-Hacid_dh_C PF02826.19 AHV94558.1 - 7.9e-08 31.9 0.1 1.2e-07 31.2 0.1 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 AHV94558.1 - 8e-08 32.8 1.0 1.9e-07 31.6 1.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 AHV94558.1 - 1.6e-06 28.3 0.5 3.9e-06 27.1 0.5 1.6 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase AdoHcyase_NAD PF00670.21 AHV94558.1 - 2.8e-05 24.3 0.2 5.4e-05 23.3 0.2 1.5 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CoA_binding PF02629.19 AHV94558.1 - 0.00027 21.6 0.6 0.00027 21.6 0.6 1.9 2 0 0 2 2 1 1 CoA binding domain NAD_binding_7 PF13241.6 AHV94558.1 - 0.01 16.3 0.5 0.025 15.0 0.5 1.6 1 0 0 1 1 1 0 Putative NAD(P)-binding Rossmann-like PF10727.9 AHV94558.1 - 0.023 14.6 2.3 0.04 13.8 2.3 1.3 1 0 0 1 1 1 0 Rossmann-like domain NAD_Gly3P_dh_N PF01210.23 AHV94558.1 - 0.027 14.5 1.1 4.8 7.1 1.1 2.3 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.16 AHV94558.1 - 0.034 13.8 0.9 0.14 11.8 0.9 2.0 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Nitro_FeMo-Co PF02579.17 AHV94558.1 - 0.084 13.2 0.4 0.28 11.5 0.4 1.9 1 0 0 1 1 1 0 Dinitrogenase iron-molybdenum cofactor PDH PF02153.17 AHV94558.1 - 0.096 11.7 0.1 0.15 11.1 0.1 1.2 1 0 0 1 1 1 0 Prephenate dehydrogenase DAO PF01266.24 AHV94559.1 - 3.1e-50 171.8 0.1 3.7e-50 171.5 0.1 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 AHV94559.1 - 1.4e-06 27.7 0.0 1.9e-06 27.3 0.0 1.1 1 0 0 1 1 1 1 FAD binding domain GMC_oxred_N PF00732.19 AHV94559.1 - 0.001 18.5 0.0 0.0017 17.8 0.0 1.3 1 0 0 1 1 1 1 GMC oxidoreductase Pyr_redox_2 PF07992.14 AHV94559.1 - 0.042 13.1 0.0 0.36 10.0 0.0 2.0 1 1 1 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 AHV94559.1 - 0.12 11.1 0.0 0.18 10.5 0.0 1.2 1 0 0 1 1 1 0 HI0933-like protein CinA PF02464.17 AHV94560.1 - 9.8e-52 174.6 1.6 1.1e-51 174.4 1.6 1.0 1 0 0 1 1 1 1 Competence-damaged protein GMC_oxred_N PF00732.19 AHV94561.1 - 4.8e-16 59.0 0.0 1.5e-15 57.4 0.0 1.8 2 0 0 2 2 2 1 GMC oxidoreductase GMC_oxred_C PF05199.13 AHV94561.1 - 1.6e-15 57.9 0.0 2.8e-15 57.1 0.0 1.4 1 0 0 1 1 1 1 GMC oxidoreductase FAD_binding_2 PF00890.24 AHV94561.1 - 0.0018 17.4 0.1 0.48 9.4 0.1 2.4 3 0 0 3 3 3 2 FAD binding domain FAD_binding_3 PF01494.19 AHV94561.1 - 0.006 15.9 0.2 0.011 15.0 0.2 1.4 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 AHV94561.1 - 0.024 13.9 0.0 0.047 12.9 0.0 1.5 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 AHV94561.1 - 0.15 11.1 0.1 0.26 10.3 0.1 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein ThiF PF00899.21 AHV94561.1 - 0.2 11.0 0.2 0.33 10.2 0.2 1.3 1 0 0 1 1 1 0 ThiF family ABC_tran PF00005.27 AHV94562.1 - 1.9e-27 96.5 0.0 2.4e-27 96.1 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 AHV94562.1 - 2.7e-10 40.5 0.8 0.00049 20.0 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system BCA_ABC_TP_C PF12399.8 AHV94562.1 - 0.00019 21.2 0.1 0.00038 20.3 0.1 1.5 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter MukB PF04310.12 AHV94562.1 - 0.0016 18.3 0.1 0.0032 17.3 0.1 1.4 1 0 0 1 1 1 1 MukB N-terminal SMC_N PF02463.19 AHV94562.1 - 0.0018 17.7 0.1 0.92 8.9 0.1 2.1 1 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 AHV94562.1 - 0.0056 16.4 2.2 0.03 14.0 2.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 AHV94562.1 - 0.0096 15.7 0.0 0.014 15.1 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain AAA_27 PF13514.6 AHV94562.1 - 0.012 15.2 0.0 0.023 14.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 AHV94562.1 - 0.014 15.9 0.1 0.02 15.4 0.1 1.2 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 AHV94562.1 - 0.016 15.5 0.5 0.055 13.7 0.5 1.9 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.22 AHV94562.1 - 0.017 14.7 0.1 0.026 14.1 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_29 PF13555.6 AHV94562.1 - 0.021 14.6 0.2 0.041 13.6 0.2 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_28 PF13521.6 AHV94562.1 - 0.021 15.0 0.3 0.042 14.1 0.3 1.5 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 AHV94562.1 - 0.12 11.6 0.1 0.19 11.0 0.1 1.2 1 0 0 1 1 1 0 Zeta toxin ATPase PF06745.13 AHV94562.1 - 0.14 11.5 0.2 14 4.9 0.0 2.1 2 0 0 2 2 2 0 KaiC AAA_24 PF13479.6 AHV94562.1 - 0.14 11.8 0.1 0.21 11.3 0.1 1.2 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 AHV94562.1 - 0.15 12.0 0.1 0.27 11.1 0.1 1.4 1 0 0 1 1 1 0 RsgA GTPase DLIC PF05783.11 AHV94562.1 - 0.16 10.8 0.1 0.21 10.4 0.1 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) TsaE PF02367.17 AHV94562.1 - 0.22 11.5 0.1 0.38 10.8 0.1 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_19 PF13245.6 AHV94562.1 - 0.25 11.7 1.3 0.73 10.2 0.4 2.0 2 0 0 2 2 2 0 AAA domain DUF3584 PF12128.8 AHV94562.1 - 0.4 8.2 0.1 0.54 7.7 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) 2-Hacid_dh_C PF02826.19 AHV94563.1 - 4.5e-55 185.7 0.0 6.8e-55 185.2 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 AHV94563.1 - 1.5e-11 44.1 0.0 1.6e-11 44.0 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 AHV94563.1 - 4.3e-07 30.2 0.0 8.9e-07 29.2 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase XdhC_C PF13478.6 AHV94563.1 - 0.0074 16.8 0.1 0.042 14.3 0.0 2.0 2 0 0 2 2 2 1 XdhC Rossmann domain IlvN PF07991.12 AHV94563.1 - 0.019 14.6 0.0 0.039 13.5 0.0 1.6 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain DUF4527 PF15030.6 AHV94563.1 - 0.14 11.5 0.4 4.7 6.6 0.1 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF4527) TyrRSs_C PF16714.5 AHV94563.1 - 0.19 11.6 0.0 0.39 10.5 0.0 1.5 1 0 0 1 1 1 0 Tyrosyl-tRNA synthetase C-terminal domain Lyase_1 PF00206.20 AHV94564.1 - 1.4e-24 87.0 0.0 2.3e-24 86.3 0.0 1.3 1 0 0 1 1 1 1 Lyase ASL_C2 PF14698.6 AHV94564.1 - 3e-11 43.9 0.0 8.1e-11 42.5 0.0 1.8 1 0 0 1 1 1 1 Argininosuccinate lyase C-terminal Baculo_PEP_C PF04513.12 AHV94564.1 - 0.064 13.3 0.5 0.36 10.9 0.0 2.3 3 0 0 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus GCP5-Mod21 PF14609.6 AHV94564.1 - 0.16 10.3 0.0 0.23 9.8 0.0 1.1 1 0 0 1 1 1 0 gamma-Tubulin ring complex non-core subunit mod21 ThiF PF00899.21 AHV94565.1 - 2.9e-64 216.8 0.0 3.5e-64 216.5 0.0 1.0 1 0 0 1 1 1 1 ThiF family Sacchrp_dh_NADP PF03435.18 AHV94565.1 - 1.2e-05 25.5 0.4 3.4e-05 24.1 0.4 1.6 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_7 PF13241.6 AHV94565.1 - 0.00016 22.0 0.1 0.00027 21.3 0.1 1.3 1 0 0 1 1 1 1 Putative NAD(P)-binding FAD_binding_3 PF01494.19 AHV94565.1 - 0.0046 16.2 0.3 0.0066 15.7 0.3 1.2 1 0 0 1 1 1 1 FAD binding domain Shikimate_DH PF01488.20 AHV94565.1 - 0.0065 16.5 0.1 0.026 14.6 0.0 1.9 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase DAO PF01266.24 AHV94565.1 - 0.0084 15.7 2.7 0.011 15.3 2.7 1.6 1 1 0 1 1 1 1 FAD dependent oxidoreductase 3HCDH_N PF02737.18 AHV94565.1 - 0.035 14.0 0.0 0.049 13.5 0.0 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Ldh_1_N PF00056.23 AHV94565.1 - 0.043 13.9 0.1 0.076 13.1 0.1 1.5 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain TrkA_N PF02254.18 AHV94565.1 - 0.05 13.9 0.1 0.33 11.2 0.0 2.3 3 0 0 3 3 3 0 TrkA-N domain UDPG_MGDP_dh_N PF03721.14 AHV94565.1 - 0.054 13.1 0.0 0.07 12.7 0.0 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ApbA PF02558.16 AHV94565.1 - 0.088 12.5 0.2 0.13 11.9 0.2 1.4 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Pyr_redox_2 PF07992.14 AHV94565.1 - 0.11 11.7 0.0 0.15 11.2 0.0 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Hpr_kinase_C PF07475.12 AHV94565.1 - 0.13 11.7 0.1 0.23 11.0 0.1 1.3 1 0 0 1 1 1 0 HPr Serine kinase C-terminal domain AlaDh_PNT_C PF01262.21 AHV94565.1 - 0.14 11.4 1.9 0.16 11.2 0.1 1.8 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain CSS-motif PF12792.7 AHV94566.1 - 6e-10 39.0 0.0 7.2e-10 38.7 0.0 1.0 1 0 0 1 1 1 1 CSS motif domain associated with EAL Acyltransferase PF01553.21 AHV94567.1 - 5.2e-16 58.5 0.0 1.2e-15 57.4 0.0 1.6 1 1 1 2 2 2 1 Acyltransferase TsaE PF02367.17 AHV94568.1 - 2e-35 121.5 0.0 2.5e-35 121.2 0.0 1.1 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_16 PF13191.6 AHV94568.1 - 0.11 12.9 0.1 0.16 12.3 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain rve PF00665.26 AHV94570.1 - 2.9e-32 111.3 0.7 4.3e-32 110.8 0.1 1.6 2 0 0 2 2 1 1 Integrase core domain LZ_Tnp_IS481 PF13011.6 AHV94570.1 - 7.7e-22 77.6 2.7 1.1e-19 70.7 0.4 2.6 1 1 1 2 2 2 1 leucine-zipper of insertion element IS481 rve_3 PF13683.6 AHV94570.1 - 5e-19 67.8 2.7 1.2e-18 66.6 2.7 1.7 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.6 AHV94570.1 - 6.1e-17 60.9 4.4 1.2e-07 31.3 0.1 2.7 2 0 0 2 2 2 2 Homeodomain-like domain HTH_28 PF13518.6 AHV94570.1 - 1.5e-15 57.1 6.5 5.9e-11 42.3 0.1 3.4 4 0 0 4 4 3 2 Helix-turn-helix domain HTH_29 PF13551.6 AHV94570.1 - 9.8e-12 44.7 0.6 2.6e-06 27.4 0.0 2.6 2 0 0 2 2 2 2 Winged helix-turn helix HTH_32 PF13565.6 AHV94570.1 - 9.4e-11 42.2 0.7 9.4e-11 42.2 0.7 2.4 2 1 0 2 2 2 1 Homeodomain-like domain HTH_38 PF13936.6 AHV94570.1 - 1.5e-06 27.9 0.6 5.1e-06 26.1 0.5 2.1 2 0 0 2 2 1 1 Helix-turn-helix domain MarR_2 PF12802.7 AHV94570.1 - 8e-06 25.6 3.1 9.5e-05 22.2 1.2 2.6 2 0 0 2 2 2 1 MarR family HTH_31 PF13560.6 AHV94570.1 - 1.4e-05 25.4 1.7 0.00059 20.1 0.4 3.2 3 0 0 3 3 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 AHV94570.1 - 3e-05 23.6 0.1 0.0064 16.1 0.3 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 AHV94570.1 - 4.6e-05 22.9 0.1 0.00056 19.4 0.2 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 YdaS_antitoxin PF15943.5 AHV94570.1 - 0.00022 21.0 0.2 0.24 11.3 0.0 2.8 2 0 0 2 2 2 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_Tnp_ISL3 PF13542.6 AHV94570.1 - 0.00023 20.5 8.5 0.002 17.5 0.6 3.9 4 0 0 4 4 3 1 Helix-turn-helix domain of transposase family ISL3 HTH_24 PF13412.6 AHV94570.1 - 0.00028 20.4 0.2 0.0021 17.6 0.3 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_3 PF01381.22 AHV94570.1 - 0.00032 20.7 0.7 0.013 15.5 0.3 2.5 2 0 0 2 2 2 1 Helix-turn-helix HTH_Crp_2 PF13545.6 AHV94570.1 - 0.0004 20.3 0.3 0.0027 17.6 0.2 2.3 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain Trp_repressor PF01371.19 AHV94570.1 - 0.00081 19.5 0.2 0.006 16.7 0.1 2.2 2 0 0 2 2 2 1 Trp repressor protein CENP-B_N PF04218.13 AHV94570.1 - 0.0016 18.0 0.0 1.6 8.5 0.1 2.3 2 0 0 2 2 2 1 CENP-B N-terminal DNA-binding domain LacI PF00356.21 AHV94570.1 - 0.0017 18.1 1.8 0.0046 16.7 0.7 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family Fe_dep_repress PF01325.19 AHV94570.1 - 0.002 18.3 0.0 0.034 14.4 0.1 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.20 AHV94570.1 - 0.0023 17.8 0.0 0.93 9.4 0.0 2.5 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 AHV94570.1 - 0.0025 17.6 1.3 0.035 13.9 0.7 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_psq PF05225.16 AHV94570.1 - 0.0025 17.5 0.7 2.3 8.0 0.4 2.9 3 0 0 3 3 3 1 helix-turn-helix, Psq domain HTH_11 PF08279.12 AHV94570.1 - 0.0026 17.7 0.4 0.015 15.3 0.5 2.2 2 0 0 2 2 2 1 HTH domain SpoIIID PF12116.8 AHV94570.1 - 0.0026 17.8 0.0 1.1 9.4 0.0 2.4 2 0 0 2 2 2 1 Stage III sporulation protein D HTH_AsnC-type PF13404.6 AHV94570.1 - 0.0036 17.1 2.7 0.045 13.6 1.1 2.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain RepB PF07506.11 AHV94570.1 - 0.0042 17.2 0.1 0.55 10.3 0.1 2.3 1 1 1 2 2 2 1 RepB plasmid partitioning protein HTH_17 PF12728.7 AHV94570.1 - 0.0043 17.2 0.7 6.1 7.1 0.0 3.3 3 1 0 3 3 3 0 Helix-turn-helix domain HTH_Tnp_1 PF01527.20 AHV94570.1 - 0.005 17.1 0.5 0.11 12.8 0.0 2.7 1 1 1 2 2 2 1 Transposase GntR PF00392.21 AHV94570.1 - 0.0053 16.4 0.8 0.5 10.1 0.3 2.5 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_10 PF04967.12 AHV94570.1 - 0.0077 16.0 0.1 0.049 13.4 0.2 2.2 2 0 0 2 2 2 1 HTH DNA binding domain HTH_35 PF13693.6 AHV94570.1 - 0.0093 16.0 1.5 0.073 13.1 0.6 2.7 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding UPF0175 PF03683.13 AHV94570.1 - 0.014 15.1 0.4 0.1 12.3 0.1 2.4 2 1 0 2 2 2 0 Uncharacterised protein family (UPF0175) HTH_30 PF13556.6 AHV94570.1 - 0.015 15.1 0.1 2 8.3 0.0 2.6 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain HTH_37 PF13744.6 AHV94570.1 - 0.016 15.2 0.1 0.13 12.3 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Tnp_4 PF13613.6 AHV94570.1 - 0.016 14.9 0.1 0.067 12.9 0.0 2.0 2 0 0 2 2 1 0 Helix-turn-helix of DDE superfamily endonuclease HTH_36 PF13730.6 AHV94570.1 - 0.02 14.8 0.1 0.58 10.2 0.0 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain KORA PF16509.5 AHV94570.1 - 0.034 14.4 0.1 3.6 8.0 0.0 3.0 3 0 0 3 3 3 0 TrfB plasmid transcriptional repressor MarR PF01047.22 AHV94570.1 - 0.045 13.7 0.1 0.14 12.1 0.1 1.8 2 0 0 2 2 1 0 MarR family DDE_Tnp_IS240 PF13610.6 AHV94570.1 - 0.048 13.9 0.1 0.071 13.3 0.1 1.3 1 0 0 1 1 1 0 DDE domain Crp PF00325.20 AHV94570.1 - 0.05 13.3 3.2 0.062 13.0 0.5 2.6 3 0 0 3 3 3 0 Bacterial regulatory proteins, crp family P22_Cro PF14549.6 AHV94570.1 - 0.051 13.4 1.6 9.6 6.1 0.1 2.5 2 0 0 2 2 2 0 DNA-binding transcriptional regulator Cro DUF746 PF05344.11 AHV94570.1 - 0.085 12.7 0.1 0.98 9.3 0.0 2.3 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) HTH_1 PF00126.27 AHV94570.1 - 0.1 12.5 2.8 4.7 7.2 0.5 2.6 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_26 PF13443.6 AHV94570.1 - 0.17 12.3 0.0 3.6 8.1 0.1 2.8 3 0 0 3 3 3 0 Cro/C1-type HTH DNA-binding domain HTH_8 PF02954.19 AHV94570.1 - 0.19 11.5 0.9 14 5.5 0.7 2.7 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family HTH_Tnp_Tc3_2 PF01498.18 AHV94570.1 - 0.27 11.5 2.6 0.47 10.7 0.1 2.6 3 0 0 3 3 1 0 Transposase HTH_33 PF13592.6 AHV94570.1 - 0.56 9.9 3.1 2.9 7.6 0.1 3.4 4 0 0 4 4 2 0 Winged helix-turn helix MerR PF00376.23 AHV94570.1 - 0.72 9.7 6.8 3.2 7.6 0.0 3.6 4 0 0 4 4 2 0 MerR family regulatory protein RuvC PF02075.17 AHV94571.1 - 1.8e-49 167.4 0.0 2.2e-49 167.1 0.0 1.1 1 0 0 1 1 1 1 Crossover junction endodeoxyribonuclease RuvC AsnC_trans_reg PF01037.21 AHV94572.1 - 6.5e-23 80.5 0.0 8.7e-23 80.1 0.0 1.2 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 AHV94572.1 - 1.3e-19 69.5 0.0 2.1e-19 68.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 AHV94572.1 - 3.5e-18 65.1 0.1 6.2e-18 64.4 0.1 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 AHV94572.1 - 1.8e-06 27.8 0.0 3.5e-06 26.8 0.0 1.4 1 0 0 1 1 1 1 HTH domain MarR PF01047.22 AHV94572.1 - 1.2e-05 25.2 0.0 1.9e-05 24.5 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 AHV94572.1 - 4.7e-05 23.4 0.0 8.3e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 AHV94572.1 - 6.7e-05 22.7 0.1 0.00011 22.0 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 AHV94572.1 - 0.00052 19.8 0.0 0.001 18.8 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.20 AHV94572.1 - 0.0024 17.7 0.0 0.0046 16.8 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_34 PF13601.6 AHV94572.1 - 0.0047 17.1 0.0 0.0072 16.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_CodY PF08222.11 AHV94572.1 - 0.0085 15.6 0.1 0.019 14.5 0.0 1.6 2 0 0 2 2 2 1 CodY helix-turn-helix domain HTH_Crp_2 PF13545.6 AHV94572.1 - 0.023 14.7 0.0 0.056 13.4 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain TrmB PF01978.19 AHV94572.1 - 0.056 13.3 0.0 0.09 12.7 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 AHV94572.1 - 0.058 13.9 0.0 0.11 13.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain LexA_DNA_bind PF01726.16 AHV94572.1 - 0.078 12.8 0.1 0.18 11.6 0.0 1.6 2 0 0 2 2 2 0 LexA DNA binding domain HTH_DeoR PF08220.12 AHV94572.1 - 0.12 12.1 0.0 0.2 11.4 0.0 1.3 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain TP_methylase PF00590.20 AHV94573.1 - 7.9e-53 179.5 0.5 9.9e-53 179.2 0.5 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Trans_reg_C PF00486.28 AHV94574.1 - 8.5e-11 41.8 0.0 1.6e-10 40.9 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal DUF2944 PF11161.8 AHV94575.1 - 2.4e-56 190.4 0.4 2.8e-56 190.2 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2946) Methyltransf_23 PF13489.6 AHV94576.1 - 1.1e-28 100.1 0.0 1.5e-28 99.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 AHV94576.1 - 3.7e-22 78.8 0.0 6e-22 78.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 AHV94576.1 - 2.8e-19 69.6 0.1 5.2e-19 68.7 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 AHV94576.1 - 2.8e-16 60.1 0.0 4.5e-16 59.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 AHV94576.1 - 3e-16 59.6 0.0 3.7e-16 59.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 AHV94576.1 - 1.4e-08 34.5 0.0 1.8e-08 34.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) CMAS PF02353.20 AHV94576.1 - 2.4e-08 33.6 0.0 2.8e-08 33.4 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Ubie_methyltran PF01209.18 AHV94576.1 - 4e-08 32.9 0.0 5.3e-08 32.5 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family NodS PF05401.11 AHV94576.1 - 8.8e-08 32.0 0.0 1.1e-07 31.6 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) MTS PF05175.14 AHV94576.1 - 3.5e-06 26.7 0.0 5.4e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_9 PF08003.11 AHV94576.1 - 9.1e-06 24.8 0.0 1.2e-05 24.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) TPMT PF05724.11 AHV94576.1 - 3.9e-05 23.4 0.0 6.6e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) DREV PF05219.12 AHV94576.1 - 4.3e-05 22.7 0.0 5.7e-05 22.3 0.0 1.1 1 0 0 1 1 1 1 DREV methyltransferase TehB PF03848.14 AHV94576.1 - 0.00021 20.7 0.0 0.00028 20.3 0.0 1.1 1 0 0 1 1 1 1 Tellurite resistance protein TehB MetW PF07021.12 AHV94576.1 - 0.00027 20.6 0.0 0.0004 20.0 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_32 PF13679.6 AHV94576.1 - 0.0077 16.2 0.0 0.01 15.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain ADH_zinc_N PF00107.26 AHV94576.1 - 0.023 14.6 0.0 0.035 14.1 0.0 1.2 1 0 0 1 1 1 0 Zinc-binding dehydrogenase Methyltransf_18 PF12847.7 AHV94576.1 - 0.031 14.2 0.0 0.049 13.6 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain FtsJ PF01728.19 AHV94576.1 - 0.043 13.9 0.0 0.14 12.2 0.0 1.8 1 1 0 1 1 1 0 FtsJ-like methyltransferase AdoMet_MTase PF07757.13 AHV94576.1 - 0.069 13.5 0.0 0.14 12.5 0.0 1.5 2 0 0 2 2 1 0 Predicted AdoMet-dependent methyltransferase PCMT PF01135.19 AHV94576.1 - 0.12 12.1 0.0 0.17 11.6 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_15 PF09445.10 AHV94576.1 - 0.18 11.4 0.0 0.25 10.9 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase AI-2E_transport PF01594.16 AHV94577.1 - 4.4e-26 91.8 29.2 8.4e-26 90.9 29.2 1.4 1 1 0 1 1 1 1 AI-2E family transporter Lyase_1 PF00206.20 AHV94578.1 - 7.4e-53 180.0 0.0 1e-52 179.5 0.0 1.2 1 0 0 1 1 1 1 Lyase ASL_C PF08328.11 AHV94578.1 - 7.3e-49 164.7 0.0 1.7e-48 163.4 0.0 1.7 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminal DUF2968 PF11180.8 AHV94579.1 - 3e-57 193.2 24.1 3.3e-57 193.0 24.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2968) Golgin_A5 PF09787.9 AHV94579.1 - 0.0037 16.8 14.8 0.0044 16.5 14.8 1.0 1 0 0 1 1 1 1 Golgin subfamily A member 5 FAM76 PF16046.5 AHV94579.1 - 0.18 11.2 5.6 0.21 10.9 5.6 1.1 1 0 0 1 1 1 0 FAM76 protein AAA_23 PF13476.6 AHV94579.1 - 0.48 10.9 6.6 0.64 10.5 6.6 1.3 1 0 0 1 1 1 0 AAA domain APG6_N PF17675.1 AHV94579.1 - 0.76 10.3 20.7 2.9 8.4 20.8 1.8 1 1 0 1 1 1 0 Apg6 coiled-coil region FapA PF03961.13 AHV94579.1 - 1.7 7.2 8.5 1.8 7.1 8.5 1.1 1 0 0 1 1 1 0 Flagellar Assembly Protein A DUF4407 PF14362.6 AHV94579.1 - 1.9 7.8 19.1 2.7 7.3 19.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) GIT_CC PF16559.5 AHV94579.1 - 3.7 7.5 18.3 0.049 13.5 7.3 2.4 1 1 1 2 2 2 0 GIT coiled-coil Rho guanine nucleotide exchange factor PALP PF00291.25 AHV94580.1 - 1.5e-60 205.1 0.9 1.8e-60 204.9 0.9 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Polysacc_deac_1 PF01522.21 AHV94581.1 - 4.5e-23 81.5 0.0 6.2e-23 81.0 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide deacetylase Cupin_2 PF07883.11 AHV94583.1 - 0.015 15.0 0.2 0.05 13.3 0.2 1.8 1 1 0 1 1 1 0 Cupin domain Peripla_BP_6 PF13458.6 AHV94584.1 - 6e-65 220.2 4.3 7.4e-65 219.8 4.3 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 AHV94584.1 - 2e-22 79.7 0.1 3.1e-12 46.2 0.0 2.0 2 0 0 2 2 2 2 Periplasmic binding protein domain ANF_receptor PF01094.28 AHV94584.1 - 2.1e-15 56.7 0.0 2.9e-15 56.2 0.0 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region FdhE PF04216.12 AHV94585.1 - 3.2e-109 365.2 2.7 3.7e-109 365.1 2.7 1.0 1 0 0 1 1 1 1 Protein involved in formate dehydrogenase formation DUF3562 PF12085.8 AHV94585.1 - 0.18 11.4 1.8 0.19 11.3 0.3 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3562) DnaJ_CXXCXGXG PF00684.19 AHV94585.1 - 1.4 9.4 7.9 0.22 11.9 4.0 1.7 2 0 0 2 2 2 0 DnaJ central domain ILVD_EDD PF00920.21 AHV94586.1 - 1.1e-134 449.9 0.0 1.3e-134 449.6 0.0 1.0 1 0 0 1 1 1 1 Dehydratase family MdcE PF06833.11 AHV94586.1 - 0.051 13.0 0.5 0.095 12.2 0.2 1.6 2 0 0 2 2 2 0 Malonate decarboxylase gamma subunit (MdcE) ThiS PF02597.20 AHV94587.1 - 3.5e-17 62.8 0.1 3.9e-17 62.7 0.1 1.0 1 0 0 1 1 1 1 ThiS family DUF348 PF03990.14 AHV94587.1 - 0.024 14.4 0.1 0.03 14.0 0.1 1.4 1 1 0 1 1 1 0 G5-linked-Ubiquitin-like domain ThiS-like PF14453.6 AHV94587.1 - 0.18 11.9 0.0 1.3 9.2 0.0 2.0 2 0 0 2 2 2 0 ThiS-like ubiquitin Metal_resist PF13801.6 AHV94588.1 - 4.6e-05 23.6 15.2 4.6e-05 23.6 15.2 2.3 1 1 2 3 3 3 2 Heavy-metal resistance LTXXQ PF07813.12 AHV94588.1 - 0.48 11.2 12.2 0.28 11.9 9.9 1.7 1 1 0 1 1 1 0 LTXXQ motif family protein RecA PF00154.21 AHV94589.1 - 3.4e-145 482.4 2.9 3.4e-145 482.4 2.9 1.4 2 0 0 2 2 2 1 recA bacterial DNA recombination protein Rad51 PF08423.11 AHV94589.1 - 1.1e-11 44.5 0.9 4e-11 42.7 0.9 1.9 1 1 0 1 1 1 1 Rad51 ATPase PF06745.13 AHV94589.1 - 8.2e-11 41.7 1.0 3.6e-10 39.6 1.0 2.3 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.6 AHV94589.1 - 7.2e-07 29.0 0.1 3.9e-05 23.3 0.1 2.4 1 1 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 AHV94589.1 - 7.3e-06 26.1 0.0 1.7e-05 24.8 0.0 1.6 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_24 PF13479.6 AHV94589.1 - 0.00093 19.0 0.0 0.0023 17.7 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 AHV94589.1 - 0.0058 17.1 0.2 0.047 14.1 0.1 2.5 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) CobU PF02283.16 AHV94589.1 - 0.0081 15.8 0.0 0.017 14.7 0.0 1.5 1 0 0 1 1 1 1 Cobinamide kinase / cobinamide phosphate guanyltransferase AAA_16 PF13191.6 AHV94589.1 - 0.011 16.1 0.1 0.02 15.3 0.1 1.4 1 0 0 1 1 1 0 AAA ATPase domain MobB PF03205.14 AHV94589.1 - 0.016 15.1 0.0 0.047 13.6 0.0 1.9 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_14 PF13173.6 AHV94589.1 - 0.035 14.1 0.0 0.12 12.4 0.0 2.0 1 1 1 2 2 2 0 AAA domain ABC_tran PF00005.27 AHV94589.1 - 0.053 14.0 0.0 0.1 13.1 0.0 1.6 1 0 0 1 1 1 0 ABC transporter AAA_35 PF14516.6 AHV94589.1 - 0.15 10.9 0.0 0.24 10.2 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain Chromate_transp PF02417.15 AHV94590.1 - 4.5e-32 111.4 9.1 5.1e-32 111.2 9.1 1.0 1 0 0 1 1 1 1 Chromate transporter Peptidase_M22 PF00814.25 AHV94591.1 - 1.2e-94 317.0 0.0 1.4e-94 316.8 0.0 1.0 1 0 0 1 1 1 1 Glycoprotease family Carbam_trans_N PF02543.15 AHV94591.1 - 0.00019 21.2 0.0 0.0011 18.8 0.0 1.9 2 0 0 2 2 2 1 Carbamoyltransferase N-terminus AnmK PF03702.14 AHV94591.1 - 0.0056 15.8 0.0 0.0078 15.4 0.0 1.2 1 0 0 1 1 1 1 Anhydro-N-acetylmuramic acid kinase baeRF_family10 PF18854.1 AHV94591.1 - 0.0096 16.2 0.6 0.055 13.7 0.2 2.3 3 0 0 3 3 3 1 Bacterial archaeo-eukaryotic release factor family 10 LpxI_N PF17930.1 AHV94591.1 - 0.015 15.2 0.0 0.04 13.8 0.0 1.7 2 0 0 2 2 2 0 LpxI N-terminal domain NBD_C PF17042.5 AHV94591.1 - 0.049 14.1 1.6 0.11 13.0 1.1 1.8 2 0 0 2 2 2 0 Nucleotide-binding C-terminal domain DUF1207 PF06727.11 AHV94591.1 - 0.27 10.1 0.1 0.43 9.4 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1207) ABC_tran PF00005.27 AHV94592.1 - 1.3e-26 93.7 0.0 1.7e-26 93.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 AHV94592.1 - 3.7e-20 72.2 0.1 6.7e-20 71.4 0.1 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 AHV94592.1 - 1e-05 25.5 0.7 5.7e-05 23.1 0.0 2.1 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 AHV94592.1 - 0.074 13.3 0.7 1.7 8.9 0.7 2.2 1 1 0 1 1 1 0 AAA domain Capsid_VP7 PF17071.5 AHV94592.1 - 0.079 12.2 0.0 0.12 11.6 0.0 1.2 1 0 0 1 1 1 0 Outer capsid protein VP7 ABC_tran PF00005.27 AHV94593.1 - 4e-33 114.8 0.0 6.1e-33 114.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 AHV94593.1 - 3.2e-08 33.8 0.4 0.0046 16.8 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 AHV94593.1 - 0.00028 20.5 0.1 0.00072 19.2 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 AHV94593.1 - 0.0011 19.4 1.3 0.0031 17.9 1.3 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 AHV94593.1 - 0.0018 18.5 0.2 0.019 15.2 0.2 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 AHV94593.1 - 0.0054 16.2 0.0 0.09 12.2 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_33 PF13671.6 AHV94593.1 - 0.0096 16.1 0.0 0.017 15.3 0.0 1.7 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 AHV94593.1 - 0.012 15.6 0.0 0.018 15.0 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase NACHT PF05729.12 AHV94593.1 - 0.012 15.6 0.2 0.074 13.0 0.1 2.0 2 0 0 2 2 2 0 NACHT domain AAA PF00004.29 AHV94593.1 - 0.024 15.1 0.0 0.078 13.4 0.1 1.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.6 AHV94593.1 - 0.027 15.0 0.0 0.045 14.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain ABC_ATPase PF09818.9 AHV94593.1 - 0.029 13.2 0.1 2.7 6.7 0.0 2.3 2 1 0 2 2 2 0 Predicted ATPase of the ABC class TOBE_2 PF08402.10 AHV94593.1 - 0.032 14.4 0.0 0.4 10.9 0.0 2.6 2 0 0 2 2 2 0 TOBE domain AAA_30 PF13604.6 AHV94593.1 - 0.047 13.4 0.1 0.09 12.5 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 AHV94593.1 - 0.047 13.9 0.1 0.12 12.6 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 AHV94593.1 - 0.05 13.2 0.0 0.13 11.9 0.0 1.6 2 0 0 2 2 1 0 AAA domain DLIC PF05783.11 AHV94593.1 - 0.062 12.1 0.1 0.094 11.5 0.1 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) PhoH PF02562.16 AHV94593.1 - 0.083 12.3 0.0 0.49 9.8 0.0 1.9 2 0 0 2 2 2 0 PhoH-like protein cobW PF02492.19 AHV94593.1 - 0.089 12.4 0.1 0.17 11.5 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain NB-ARC PF00931.22 AHV94593.1 - 0.098 11.8 0.1 0.15 11.2 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_18 PF13238.6 AHV94593.1 - 0.16 12.5 0.0 0.3 11.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain TsaE PF02367.17 AHV94593.1 - 0.18 11.8 0.1 0.33 10.9 0.1 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_5 PF07728.14 AHV94593.1 - 0.26 11.3 0.8 0.94 9.5 0.2 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Coprogen_oxidas PF01218.18 AHV94594.1 - 4.4e-36 124.1 0.0 5.3e-36 123.9 0.0 1.0 1 0 0 1 1 1 1 Coproporphyrinogen III oxidase Phage_ASH PF10554.9 AHV94594.1 - 0.17 12.3 0.3 0.68 10.3 0.1 1.8 1 1 1 2 2 2 0 Ash protein family FimA PF16970.5 AHV94595.1 - 4.6e-15 56.0 0.0 5.6e-15 55.8 0.0 1.1 1 0 0 1 1 1 1 Type-1 fimbrial protein, A DUF853 PF05872.12 AHV94596.1 - 1.1e-225 750.0 0.3 1.3e-225 749.8 0.3 1.0 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF853) AAA_10 PF12846.7 AHV94596.1 - 2.1e-07 30.2 0.0 0.00017 20.6 0.0 2.1 2 0 0 2 2 2 2 AAA-like domain DUF87 PF01935.17 AHV94596.1 - 1.9e-06 28.1 0.0 2.9e-06 27.5 0.0 1.3 1 0 0 1 1 1 1 Helicase HerA, central domain AAA_22 PF13401.6 AHV94596.1 - 4.1e-06 27.1 0.2 0.0068 16.7 0.1 2.5 2 0 0 2 2 2 2 AAA domain ResIII PF04851.15 AHV94596.1 - 2.9e-05 24.1 0.0 0.0052 16.8 0.1 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_19 PF13245.6 AHV94596.1 - 6.3e-05 23.3 0.0 0.00011 22.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 AHV94596.1 - 6.7e-05 22.7 0.9 0.00013 21.7 0.2 1.9 2 0 0 2 2 2 1 AAA domain TrwB_AAD_bind PF10412.9 AHV94596.1 - 0.00075 18.5 0.1 0.002 17.1 0.1 1.6 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain Zot PF05707.12 AHV94596.1 - 0.0022 17.6 0.0 0.032 13.9 0.0 2.1 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) FtsK_SpoIIIE PF01580.18 AHV94596.1 - 0.0032 16.8 0.0 0.039 13.3 0.0 2.2 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_28 PF13521.6 AHV94596.1 - 0.012 15.9 0.7 0.025 14.8 0.7 1.5 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 AHV94596.1 - 0.012 16.1 0.1 2.4 8.6 0.1 2.4 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 AHV94596.1 - 0.015 15.7 4.6 0.36 11.2 2.1 3.0 2 1 0 2 2 2 0 AAA ATPase domain DUF2075 PF09848.9 AHV94596.1 - 0.024 13.9 0.1 2.5 7.3 0.1 2.3 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) CbiA PF01656.23 AHV94596.1 - 0.06 13.4 0.0 0.1 12.6 0.0 1.4 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain T2SSE PF00437.20 AHV94596.1 - 0.12 11.4 0.1 0.22 10.5 0.1 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein PseudoU_synth_2 PF00849.22 AHV94597.1 - 3.8e-16 59.6 0.0 7.6e-16 58.6 0.0 1.5 1 1 0 1 1 1 1 RNA pseudouridylate synthase S4 PF01479.25 AHV94597.1 - 1.2e-10 40.9 1.3 2.8e-09 36.5 0.2 2.4 1 1 1 2 2 2 2 S4 domain ABC_tran PF00005.27 AHV94598.1 - 3.4e-28 98.9 0.0 5.1e-28 98.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.23 AHV94598.1 - 3.8e-27 95.6 0.8 4.9e-27 95.3 0.8 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region AAA_21 PF13304.6 AHV94598.1 - 2.2e-08 34.3 0.3 0.0003 20.7 0.3 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 AHV94598.1 - 1.1e-05 25.0 0.0 0.0092 15.4 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 AHV94598.1 - 0.00015 21.4 0.1 0.00032 20.4 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 AHV94598.1 - 0.0089 16.4 1.6 0.0089 16.4 1.6 2.2 2 1 0 2 2 2 1 AAA ATPase domain SbcCD_C PF13558.6 AHV94598.1 - 0.014 15.6 0.1 0.22 11.8 0.1 2.4 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit RsgA_GTPase PF03193.16 AHV94598.1 - 0.021 14.7 0.0 0.037 13.9 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase DUF815 PF05673.13 AHV94598.1 - 0.054 12.7 0.1 0.092 11.9 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_18 PF13238.6 AHV94598.1 - 0.071 13.7 0.0 0.17 12.4 0.0 1.7 1 0 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.18 AHV94598.1 - 0.1 12.0 0.0 0.19 11.1 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family MMR_HSR1 PF01926.23 AHV94598.1 - 0.18 11.9 0.0 0.35 11.0 0.0 1.4 1 0 0 1 1 1 0 50S ribosome-binding GTPase K_channel_TID PF07941.11 AHV94599.1 - 8.5 6.9 8.1 21 5.7 1.4 2.3 1 1 1 2 2 2 0 Potassium channel Kv1.4 tandem inactivation domain rve_3 PF13683.6 AHV94600.1 - 3.8e-12 45.8 0.1 4.7e-12 45.5 0.1 1.1 1 0 0 1 1 1 1 Integrase core domain rve_2 PF13333.6 AHV94600.1 - 0.0067 16.6 0.0 0.0078 16.4 0.0 1.1 1 0 0 1 1 1 1 Integrase core domain SNARE_assoc PF09335.11 AHV94601.1 - 0.0017 18.8 1.9 0.0019 18.7 0.2 1.9 1 1 1 2 2 2 1 SNARE associated Golgi protein Response_reg PF00072.24 AHV94602.1 - 6.2e-27 94.0 0.0 9.5e-27 93.4 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 AHV94602.1 - 5.5e-22 77.6 0.1 1e-21 76.8 0.1 1.4 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal HTH_11 PF08279.12 AHV94602.1 - 0.012 15.6 0.1 0.038 13.9 0.1 2.0 1 1 0 1 1 1 0 HTH domain NgoMIV_restric PF09015.10 AHV94602.1 - 0.012 14.8 0.0 0.017 14.3 0.0 1.1 1 0 0 1 1 1 0 NgoMIV restriction enzyme Sua5_yciO_yrdC PF01300.18 AHV94603.1 - 1.3e-05 24.8 0.0 1.4e-05 24.7 0.0 1.0 1 0 0 1 1 1 1 Telomere recombination Isochorismatase PF00857.20 AHV94604.1 - 8.1e-26 91.2 0.4 9.4e-26 91.1 0.4 1.1 1 0 0 1 1 1 1 Isochorismatase family Metallophos PF00149.28 AHV94605.1 - 2.3e-12 47.8 0.0 8.9e-12 45.9 0.0 1.8 2 0 0 2 2 2 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 AHV94605.1 - 0.00014 22.1 0.0 0.00027 21.2 0.0 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.6 AHV94605.1 - 0.0075 15.6 0.0 0.12 11.7 0.0 2.1 1 1 0 1 1 1 1 Metallophosphoesterase, calcineurin superfamily baeRF_family10 PF18854.1 AHV94605.1 - 0.14 12.4 4.8 0.2 11.9 0.2 2.7 2 1 0 2 2 2 0 Bacterial archaeo-eukaryotic release factor family 10 Glyoxalase PF00903.25 AHV94606.1 - 3.7e-25 88.6 0.2 4.2e-25 88.4 0.2 1.0 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 AHV94606.1 - 3.4e-10 40.2 0.0 9.8e-10 38.7 0.0 1.6 1 1 1 2 2 2 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 AHV94606.1 - 8.1e-06 26.6 0.0 1.1e-05 26.2 0.0 1.2 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_2 PF12681.7 AHV94606.1 - 0.0043 17.0 0.0 0.0083 16.1 0.0 1.4 1 1 0 1 1 1 1 Glyoxalase-like domain CppA_N PF14506.6 AHV94606.1 - 0.0046 17.0 0.0 0.0061 16.6 0.0 1.3 1 1 0 1 1 1 1 CppA N-terminal DUF4926 PF16277.5 AHV94606.1 - 0.014 14.7 0.0 0.05 13.0 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4926) DNA_binding_1 PF01035.20 AHV94607.1 - 3.9e-27 94.2 4.9 2.5e-26 91.6 1.1 2.8 2 1 0 2 2 2 1 6-O-methylguanine DNA methyltransferase, DNA binding domain Ada_Zn_binding PF02805.16 AHV94607.1 - 6.5e-22 77.3 0.0 1.9e-21 75.8 0.0 1.8 1 0 0 1 1 1 1 Metal binding domain of Ada HTH_18 PF12833.7 AHV94607.1 - 6.2e-17 61.7 1.9 6.2e-17 61.7 1.9 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_AraC PF00165.23 AHV94607.1 - 5.4e-12 45.5 0.2 3.8e-07 30.0 0.0 3.3 3 0 0 3 3 3 2 Bacterial regulatory helix-turn-helix proteins, AraC family Methyltransf_1N PF02870.15 AHV94607.1 - 0.00099 19.9 0.0 0.0023 18.7 0.0 1.6 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain GntR PF00392.21 AHV94607.1 - 0.14 11.8 0.0 0.39 10.4 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family CW_7 PF08230.11 AHV94607.1 - 0.2 11.4 0.5 14 5.5 0.0 2.8 3 0 0 3 3 3 0 CW_7 repeat CobW_C PF07683.14 AHV94608.1 - 3e-14 52.7 0.0 5.7e-14 51.8 0.0 1.4 1 0 0 1 1 1 1 Cobalamin synthesis protein cobW C-terminal domain cobW PF02492.19 AHV94608.1 - 5.1e-06 26.2 0.1 6.8e-06 25.8 0.1 1.2 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain BPD_transp_1 PF00528.22 AHV94609.1 - 2.8e-14 53.3 13.2 2.8e-14 53.3 13.2 1.5 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Phage_holin_5_1 PF06946.11 AHV94609.1 - 0.72 10.3 0.0 0.72 10.3 0.0 3.2 4 1 0 4 4 4 0 Bacteriophage A118-like holin, Hol118 SelA PF03841.13 AHV94610.1 - 3.1e-159 529.9 0.0 4.4e-159 529.4 0.0 1.2 1 0 0 1 1 1 1 L-seryl-tRNA selenium transferase Se-cys_synth_N PF12390.8 AHV94610.1 - 8.1e-06 26.0 4.7 1.2e-05 25.4 0.5 3.1 2 0 0 2 2 2 1 Selenocysteine synthase N terminal Aminotran_5 PF00266.19 AHV94610.1 - 1.9e-05 23.8 0.1 7.9e-05 21.8 0.1 1.8 1 1 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 AHV94610.1 - 3.2e-05 22.6 0.1 7.2e-05 21.5 0.1 1.4 1 1 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 AHV94610.1 - 0.0038 16.6 0.1 0.013 14.8 0.1 1.9 1 1 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 AHV94610.1 - 0.0041 16.5 0.6 0.0041 16.5 0.6 2.0 2 1 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family SBP_bac_5 PF00496.22 AHV94611.1 - 4.1e-83 279.4 0.3 5.3e-83 279.1 0.3 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Pectate_lyase_2 PF06917.12 AHV94611.1 - 0.0012 17.5 0.0 0.0022 16.7 0.0 1.3 1 0 0 1 1 1 1 Periplasmic pectate lyase PGM_PMM_III PF02880.16 AHV94612.1 - 6.8e-22 77.8 0.0 1e-21 77.3 0.0 1.2 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_II PF02879.16 AHV94612.1 - 4.7e-18 65.7 0.1 8.9e-18 64.8 0.1 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.20 AHV94612.1 - 1.2e-09 38.2 0.0 2.3e-09 37.3 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain DUF2218 PF09981.9 AHV94612.1 - 0.066 13.6 0.1 0.11 12.9 0.1 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2218) RrnaAD PF00398.20 AHV94613.1 - 5.1e-53 179.8 0.0 5.8e-53 179.6 0.0 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Peptidase_M24 PF00557.24 AHV94615.1 - 7.4e-64 215.3 0.1 1e-63 214.8 0.1 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 AMP_N PF05195.16 AHV94615.1 - 1.3e-31 108.9 0.0 2.3e-31 108.1 0.0 1.4 1 0 0 1 1 1 1 Aminopeptidase P, N-terminal domain Creatinase_N PF01321.18 AHV94615.1 - 0.00052 20.7 0.0 0.0015 19.2 0.0 1.9 2 0 0 2 2 2 1 Creatinase/Prolidase N-terminal domain FGAR-AT_N PF18076.1 AHV94616.1 - 9.4e-38 128.7 0.0 1.4e-37 128.2 0.0 1.3 1 0 0 1 1 1 1 Formylglycinamide ribonucleotide amidotransferase N-terminal FGAR-AT_linker PF18072.1 AHV94616.1 - 6.2e-24 84.3 0.0 1e-23 83.6 0.0 1.4 1 0 0 1 1 1 1 Formylglycinamide ribonucleotide amidotransferase linker domain AIRS_C PF02769.22 AHV94616.1 - 0.06 13.5 0.0 0.13 12.4 0.0 1.6 1 0 0 1 1 1 0 AIR synthase related protein, C-terminal domain LZ_Tnp_IS481 PF13011.6 AHV94617.1 - 2.2e-22 79.4 2.6 4.5e-20 72.0 0.4 2.4 1 1 1 2 2 2 1 leucine-zipper of insertion element IS481 HTH_23 PF13384.6 AHV94617.1 - 2.6e-17 62.1 4.4 6.1e-08 32.2 0.1 2.4 2 0 0 2 2 2 2 Homeodomain-like domain HTH_28 PF13518.6 AHV94617.1 - 1.3e-16 60.5 2.6 2.9e-11 43.3 0.1 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_29 PF13551.6 AHV94617.1 - 3.3e-12 46.2 0.6 1.3e-06 28.3 0.0 2.4 2 0 0 2 2 2 2 Winged helix-turn helix HTH_32 PF13565.6 AHV94617.1 - 1.8e-11 44.5 0.7 4.3e-11 43.3 0.7 1.7 1 0 0 1 1 1 1 Homeodomain-like domain HTH_38 PF13936.6 AHV94617.1 - 2.1e-06 27.4 1.8 4.5e-06 26.3 1.1 2.0 2 1 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 AHV94617.1 - 4.7e-06 26.4 3.6 5.3e-05 23.0 1.3 2.3 2 0 0 2 2 2 1 MarR family HTH_Tnp_ISL3 PF13542.6 AHV94617.1 - 5e-06 25.8 1.9 0.0011 18.4 0.6 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 Sigma70_r4_2 PF08281.12 AHV94617.1 - 1.2e-05 24.9 0.1 0.0035 17.0 0.3 2.3 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 AHV94617.1 - 2.3e-05 23.8 0.1 0.00031 20.2 0.2 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_31 PF13560.6 AHV94617.1 - 4e-05 23.9 4.3 0.00033 20.9 0.5 3.0 3 1 0 3 3 2 1 Helix-turn-helix domain YdaS_antitoxin PF15943.5 AHV94617.1 - 0.0001 22.1 0.3 0.13 12.1 0.0 2.5 2 0 0 2 2 2 2 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_24 PF13412.6 AHV94617.1 - 0.00012 21.6 0.2 0.0012 18.4 0.3 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_3 PF01381.22 AHV94617.1 - 0.00013 22.0 0.7 0.0076 16.3 0.3 2.5 2 0 0 2 2 2 1 Helix-turn-helix HTH_Crp_2 PF13545.6 AHV94617.1 - 0.00017 21.5 0.4 0.0015 18.5 0.2 2.3 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain Trp_repressor PF01371.19 AHV94617.1 - 0.00038 20.5 0.2 0.0033 17.5 0.1 2.0 2 0 0 2 2 2 1 Trp repressor protein LacI PF00356.21 AHV94617.1 - 0.00052 19.7 1.2 0.0027 17.5 0.7 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family CENP-B_N PF04218.13 AHV94617.1 - 0.00055 19.5 0.0 0.88 9.2 0.1 2.3 2 0 0 2 2 2 2 CENP-B N-terminal DNA-binding domain HTH_5 PF01022.20 AHV94617.1 - 0.00069 19.4 0.0 0.5 10.3 0.0 2.5 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.19 AHV94617.1 - 0.0007 19.7 0.0 0.018 15.2 0.0 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain SpoIIID PF12116.8 AHV94617.1 - 0.00095 19.2 0.0 0.54 10.4 0.0 2.2 2 0 0 2 2 2 1 Stage III sporulation protein D HTH_IclR PF09339.10 AHV94617.1 - 0.001 18.8 1.6 0.019 14.7 0.7 2.5 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_11 PF08279.12 AHV94617.1 - 0.0011 18.8 0.5 0.008 16.1 0.5 2.2 2 0 0 2 2 2 1 HTH domain RepB PF07506.11 AHV94617.1 - 0.0013 18.8 0.2 0.28 11.3 0.1 2.2 1 1 1 2 2 2 1 RepB plasmid partitioning protein HTH_psq PF05225.16 AHV94617.1 - 0.0016 18.1 0.5 1.3 8.8 0.5 2.3 2 0 0 2 2 2 1 helix-turn-helix, Psq domain GntR PF00392.21 AHV94617.1 - 0.002 17.7 0.8 0.28 10.8 0.4 2.5 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_AsnC-type PF13404.6 AHV94617.1 - 0.0023 17.7 3.1 0.03 14.2 1.4 2.6 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_Tnp_1 PF01527.20 AHV94617.1 - 0.0026 18.0 0.4 0.052 13.9 0.0 2.2 1 1 1 2 2 2 1 Transposase HTH_17 PF12728.7 AHV94617.1 - 0.0028 17.8 0.1 3.5 7.9 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_10 PF04967.12 AHV94617.1 - 0.0047 16.7 0.1 0.028 14.2 0.2 2.0 2 0 0 2 2 2 1 HTH DNA binding domain HTH_30 PF13556.6 AHV94617.1 - 0.0055 16.5 0.1 0.97 9.3 0.0 2.4 2 0 0 2 2 2 1 PucR C-terminal helix-turn-helix domain HTH_35 PF13693.6 AHV94617.1 - 0.0055 16.7 0.9 0.038 14.0 0.6 2.1 1 1 1 2 2 2 1 Winged helix-turn-helix DNA-binding UPF0175 PF03683.13 AHV94617.1 - 0.0062 16.2 0.4 0.052 13.3 0.1 2.2 2 1 1 3 3 2 1 Uncharacterised protein family (UPF0175) HTH_37 PF13744.6 AHV94617.1 - 0.0073 16.2 0.1 0.065 13.2 0.1 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Tnp_4 PF13613.6 AHV94617.1 - 0.01 15.6 0.1 0.038 13.7 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix of DDE superfamily endonuclease Crp PF00325.20 AHV94617.1 - 0.014 15.1 1.5 0.036 13.7 0.5 2.2 2 0 0 2 2 2 0 Bacterial regulatory proteins, crp family HTH_36 PF13730.6 AHV94617.1 - 0.017 15.1 0.0 0.32 11.0 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain MarR PF01047.22 AHV94617.1 - 0.02 14.8 0.1 0.08 12.9 0.1 2.0 2 0 0 2 2 2 0 MarR family P22_Cro PF14549.6 AHV94617.1 - 0.027 14.3 2.0 5.1 7.0 0.1 2.3 2 0 0 2 2 2 0 DNA-binding transcriptional regulator Cro DUF746 PF05344.11 AHV94617.1 - 0.036 13.9 0.1 0.54 10.1 0.0 2.2 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) HTH_1 PF00126.27 AHV94617.1 - 0.045 13.7 3.0 2.7 8.0 0.5 2.4 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_DeoR PF08220.12 AHV94617.1 - 0.05 13.3 0.1 5.6 6.8 0.0 2.3 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain HTH_Tnp_Tc3_2 PF01498.18 AHV94617.1 - 0.083 13.2 1.5 0.24 11.7 0.1 2.4 2 0 0 2 2 2 0 Transposase HTH_8 PF02954.19 AHV94617.1 - 0.093 12.5 0.9 8.2 6.3 0.8 2.4 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family Sigma54_DBD PF04552.13 AHV94617.1 - 0.098 12.4 0.1 0.16 11.7 0.1 1.3 1 0 0 1 1 1 0 Sigma-54, DNA binding domain TrmB PF01978.19 AHV94617.1 - 0.12 12.3 0.0 0.35 10.8 0.1 1.7 2 0 0 2 2 1 0 Sugar-specific transcriptional regulator TrmB HTH_7 PF02796.15 AHV94617.1 - 0.12 12.5 0.4 0.28 11.3 0.1 1.7 2 0 0 2 2 1 0 Helix-turn-helix domain of resolvase DUF1804 PF08822.11 AHV94617.1 - 0.13 12.2 0.2 10 6.1 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1804) HTH_26 PF13443.6 AHV94617.1 - 0.16 12.4 0.0 1.9 9.0 0.1 2.3 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain DUF977 PF06163.11 AHV94617.1 - 0.16 11.9 0.2 11 6.0 0.0 2.2 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF977) MerR_1 PF13411.6 AHV94617.1 - 0.21 11.7 0.9 1.4 9.1 0.0 2.4 3 0 0 3 3 2 0 MerR HTH family regulatory protein MerR PF00376.23 AHV94617.1 - 0.74 9.6 7.8 1.9 8.3 0.0 3.3 4 0 0 4 4 3 0 MerR family regulatory protein Ribosomal_L27 PF01016.19 AHV94618.1 - 1e-35 121.6 5.0 1.1e-35 121.5 5.0 1.0 1 0 0 1 1 1 1 Ribosomal L27 protein Peptidase_M23 PF01551.22 AHV94618.1 - 0.058 13.6 1.4 0.52 10.6 0.1 2.0 2 0 0 2 2 2 0 Peptidase family M23 Ni_hydr_CYTB PF01292.20 AHV94619.1 - 2.7e-20 72.8 5.3 3.6e-20 72.3 5.3 1.2 1 0 0 1 1 1 1 Prokaryotic cytochrome b561 DUF4405 PF14358.6 AHV94619.1 - 0.00027 21.4 0.8 0.33 11.5 0.0 2.7 2 0 0 2 2 2 2 Domain of unknown function (DUF4405) HlyD_D23 PF16576.5 AHV94621.1 - 4.8e-30 104.4 0.1 6.7e-30 103.9 0.1 1.2 1 0 0 1 1 1 1 Barrel-sandwich domain of CusB or HlyD membrane-fusion HlyD_3 PF13437.6 AHV94621.1 - 9.7e-20 71.3 0.2 2.1e-17 63.8 0.0 2.5 2 0 0 2 2 2 1 HlyD family secretion protein Biotin_lipoyl_2 PF13533.6 AHV94621.1 - 4.2e-11 42.5 5.9 2e-06 27.5 0.3 3.7 3 1 1 4 4 4 2 Biotin-lipoyl like Biotin_lipoyl PF00364.22 AHV94621.1 - 6.4e-05 22.7 0.2 0.64 9.9 0.0 3.2 3 1 1 4 4 4 3 Biotin-requiring enzyme HlyD PF00529.20 AHV94621.1 - 0.039 13.8 0.3 0.15 11.9 0.1 2.2 2 1 0 2 2 2 0 HlyD membrane-fusion protein of T1SS tRNA-synt_His PF13393.6 AHV94622.1 - 2.7e-109 365.2 1.6 3.1e-109 365.0 1.6 1.0 1 0 0 1 1 1 1 Histidyl-tRNA synthetase Glycos_transf_1 PF00534.20 AHV94623.1 - 3.5e-27 95.0 0.0 5.3e-27 94.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 AHV94623.1 - 5.1e-27 94.9 0.1 9.3e-27 94.1 0.1 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 AHV94623.1 - 5.6e-14 52.5 1.1 1e-13 51.6 1.1 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 AHV94623.1 - 6.9e-10 39.6 8.8 6.9e-10 39.6 8.8 2.6 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 AHV94623.1 - 3.4e-06 27.3 0.0 8.8e-06 26.0 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 CMD PF02627.20 AHV94624.1 - 4.4e-17 61.9 4.5 4.5e-15 55.5 0.2 2.6 2 1 1 3 3 3 2 Carboxymuconolactone decarboxylase family Response_reg PF00072.24 AHV94625.1 - 2e-21 76.2 0.0 3.5e-21 75.5 0.0 1.4 1 0 0 1 1 1 1 Response regulator receiver domain Trans_reg_C PF00486.28 AHV94625.1 - 5.7e-18 64.8 0.3 1.2e-17 63.7 0.3 1.6 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal DUF3563 PF12086.8 AHV94625.1 - 0.48 10.2 3.2 3.2 7.5 0.1 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF3563) DUF3298 PF11738.8 AHV94626.1 - 4.5e-10 40.4 0.0 7.3e-10 39.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3298) Hydrolase_4 PF12146.8 AHV94627.1 - 1.7e-22 79.8 0.1 5.9e-18 65.0 0.0 2.1 1 1 1 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 AHV94627.1 - 5.1e-11 43.6 5.2 5.1e-11 43.6 5.2 2.5 2 1 0 2 2 2 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 AHV94627.1 - 2.2e-08 34.1 0.0 1.6e-05 24.7 0.0 2.3 1 1 1 2 2 2 2 alpha/beta hydrolase fold Peptidase_S9 PF00326.21 AHV94627.1 - 6e-05 22.6 0.0 0.00013 21.5 0.0 1.5 1 1 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_3 PF07859.13 AHV94627.1 - 9.8e-05 22.3 0.1 0.00017 21.5 0.0 1.5 2 0 0 2 2 2 1 alpha/beta hydrolase fold AXE1 PF05448.12 AHV94627.1 - 0.00014 20.7 0.0 0.027 13.1 0.0 2.1 1 1 1 2 2 2 2 Acetyl xylan esterase (AXE1) Lipase_3 PF01764.25 AHV94627.1 - 0.00096 19.0 0.0 0.0016 18.3 0.0 1.3 1 0 0 1 1 1 1 Lipase (class 3) Abhydrolase_5 PF12695.7 AHV94627.1 - 0.0014 18.4 0.0 0.052 13.3 0.0 2.2 1 1 1 2 2 2 1 Alpha/beta hydrolase family FSH1 PF03959.13 AHV94627.1 - 0.018 14.7 0.0 0.034 13.8 0.0 1.5 1 1 0 1 1 1 0 Serine hydrolase (FSH1) Esterase PF00756.20 AHV94627.1 - 0.02 14.5 0.1 0.39 10.3 0.0 2.2 2 0 0 2 2 2 0 Putative esterase Thioesterase PF00975.20 AHV94627.1 - 0.11 12.6 0.0 0.16 12.0 0.0 1.3 1 0 0 1 1 1 0 Thioesterase domain Ribosomal_L9_C PF03948.14 AHV94628.1 - 7.5e-23 80.8 0.1 1.3e-22 80.1 0.1 1.4 1 0 0 1 1 1 1 Ribosomal protein L9, C-terminal domain Ribosomal_L9_N PF01281.19 AHV94628.1 - 1.8e-22 78.6 0.3 3.2e-22 77.8 0.3 1.4 1 0 0 1 1 1 1 Ribosomal protein L9, N-terminal domain DUF2229 PF09989.9 AHV94628.1 - 0.062 12.9 0.1 0.07 12.8 0.1 1.1 1 0 0 1 1 1 0 CoA enzyme activase uncharacterised domain (DUF2229) MFS_1 PF07690.16 AHV94629.1 - 2.4e-30 105.7 64.2 3.6e-17 62.3 20.3 2.0 2 0 0 2 2 2 2 Major Facilitator Superfamily LZ_Tnp_IS481 PF13011.6 AHV94630.1 - 5.4e-22 78.1 2.6 4.6e-20 71.9 0.4 2.4 1 1 1 2 2 2 1 leucine-zipper of insertion element IS481 HTH_23 PF13384.6 AHV94630.1 - 6.7e-17 60.8 4.2 6.1e-08 32.2 0.1 2.4 2 0 0 2 2 2 2 Homeodomain-like domain HTH_28 PF13518.6 AHV94630.1 - 5.4e-16 58.5 2.3 2.9e-11 43.3 0.1 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_29 PF13551.6 AHV94630.1 - 6.1e-12 45.4 0.6 1.3e-06 28.3 0.0 2.4 2 0 0 2 2 2 2 Winged helix-turn helix HTH_32 PF13565.6 AHV94630.1 - 7.3e-11 42.5 0.7 1.8e-10 41.3 0.7 1.7 1 0 0 1 1 1 1 Homeodomain-like domain HTH_38 PF13936.6 AHV94630.1 - 6.3e-06 25.9 1.4 1.5e-05 24.7 0.8 2.0 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 AHV94630.1 - 1.2e-05 24.6 2.0 0.0026 17.1 0.6 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 MarR_2 PF12802.7 AHV94630.1 - 1.7e-05 24.6 3.4 0.0002 21.2 1.2 2.3 2 0 0 2 2 2 1 MarR family Sigma70_r4 PF04545.16 AHV94630.1 - 6.4e-05 22.4 0.1 0.00087 18.8 0.2 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 YdaS_antitoxin PF15943.5 AHV94630.1 - 0.00014 21.7 0.3 0.18 11.7 0.0 2.5 2 0 0 2 2 2 2 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT Sigma70_r4_2 PF08281.12 AHV94630.1 - 0.00017 21.2 0.1 0.05 13.3 0.2 2.3 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_31 PF13560.6 AHV94630.1 - 0.00018 21.8 3.9 0.0018 18.6 0.4 3.0 3 1 0 3 3 2 1 Helix-turn-helix domain HTH_24 PF13412.6 AHV94630.1 - 0.00027 20.4 0.2 0.0026 17.3 0.3 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_3 PF01381.22 AHV94630.1 - 0.00037 20.5 0.6 0.023 14.7 0.2 2.5 2 0 0 2 2 2 1 Helix-turn-helix LacI PF00356.21 AHV94630.1 - 0.00048 19.9 1.0 0.0026 17.5 0.6 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family Trp_repressor PF01371.19 AHV94630.1 - 0.00074 19.6 0.2 0.0064 16.6 0.1 2.0 2 0 0 2 2 2 1 Trp repressor protein HTH_Crp_2 PF13545.6 AHV94630.1 - 0.00083 19.3 0.3 0.0072 16.3 0.1 2.3 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain SpoIIID PF12116.8 AHV94630.1 - 0.0011 19.0 0.0 0.54 10.4 0.0 2.2 2 0 0 2 2 2 1 Stage III sporulation protein D CENP-B_N PF04218.13 AHV94630.1 - 0.0015 18.1 0.0 2 8.1 0.0 2.3 2 0 0 2 2 2 2 CENP-B N-terminal DNA-binding domain HTH_5 PF01022.20 AHV94630.1 - 0.0017 18.2 0.0 1.2 9.0 0.0 2.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.19 AHV94630.1 - 0.0018 18.4 0.0 0.046 13.9 0.0 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_Tnp_1 PF01527.20 AHV94630.1 - 0.0025 18.1 0.6 0.053 13.9 0.0 2.2 1 1 1 2 2 2 1 Transposase HTH_IclR PF09339.10 AHV94630.1 - 0.0031 17.3 1.2 0.069 13.0 0.4 2.5 2 0 0 2 2 2 1 IclR helix-turn-helix domain GntR PF00392.21 AHV94630.1 - 0.0044 16.6 0.7 0.67 9.7 0.3 2.5 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_17 PF12728.7 AHV94630.1 - 0.0058 16.8 0.1 3.5 7.9 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_AsnC-type PF13404.6 AHV94630.1 - 0.006 16.4 2.7 0.086 12.7 1.1 2.6 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain RepB PF07506.11 AHV94630.1 - 0.0096 16.0 0.1 2.1 8.4 0.1 2.2 1 1 1 2 2 2 1 RepB plasmid partitioning protein HTH_11 PF08279.12 AHV94630.1 - 0.012 15.6 0.6 0.081 12.9 0.5 2.2 2 0 0 2 2 2 0 HTH domain HTH_psq PF05225.16 AHV94630.1 - 0.012 15.4 0.3 4.7 7.0 0.0 2.3 2 0 0 2 2 2 0 helix-turn-helix, Psq domain HTH_30 PF13556.6 AHV94630.1 - 0.013 15.3 0.0 0.97 9.3 0.0 2.4 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain HTH_10 PF04967.12 AHV94630.1 - 0.017 14.9 0.0 0.094 12.5 0.1 2.0 2 0 0 2 2 2 0 HTH DNA binding domain HTH_Tnp_4 PF13613.6 AHV94630.1 - 0.02 14.6 0.1 0.075 12.8 0.1 1.9 2 0 0 2 2 2 0 Helix-turn-helix of DDE superfamily endonuclease HTH_35 PF13693.6 AHV94630.1 - 0.02 14.9 0.6 0.15 12.1 0.4 2.1 1 1 1 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_37 PF13744.6 AHV94630.1 - 0.032 14.2 0.1 0.29 11.1 0.1 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain UPF0175 PF03683.13 AHV94630.1 - 0.032 13.9 0.3 0.29 10.9 0.1 2.2 2 1 1 3 3 3 0 Uncharacterised protein family (UPF0175) Crp PF00325.20 AHV94630.1 - 0.032 13.9 1.2 0.095 12.4 0.4 2.2 2 0 0 2 2 2 0 Bacterial regulatory proteins, crp family P22_Cro PF14549.6 AHV94630.1 - 0.033 14.0 1.9 5.1 7.0 0.1 2.3 2 0 0 2 2 2 0 DNA-binding transcriptional regulator Cro HTH_1 PF00126.27 AHV94630.1 - 0.042 13.8 2.0 4.1 7.4 0.2 2.4 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family DUF746 PF05344.11 AHV94630.1 - 0.049 13.5 0.1 0.54 10.1 0.0 2.2 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) MarR PF01047.22 AHV94630.1 - 0.05 13.5 0.1 0.2 11.6 0.1 2.0 2 0 0 2 2 2 0 MarR family HTH_DeoR PF08220.12 AHV94630.1 - 0.072 12.8 0.2 5.6 6.8 0.0 2.3 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain HTH_Tnp_Tc3_2 PF01498.18 AHV94630.1 - 0.12 12.6 1.7 0.33 11.2 0.1 2.4 2 0 0 2 2 2 0 Transposase MerR_1 PF13411.6 AHV94630.1 - 0.14 12.3 0.7 1.4 9.1 0.0 2.5 3 0 0 3 3 2 0 MerR HTH family regulatory protein HTH_36 PF13730.6 AHV94630.1 - 0.15 12.1 0.0 3 7.9 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_7 PF02796.15 AHV94630.1 - 0.18 11.9 0.4 0.42 10.7 0.1 1.7 2 0 0 2 2 1 0 Helix-turn-helix domain of resolvase MerR PF00376.23 AHV94630.1 - 0.75 9.6 7.8 1.9 8.3 0.0 3.3 4 0 0 4 4 3 0 MerR family regulatory protein rve PF00665.26 AHV94631.1 - 2.9e-32 111.3 0.7 4.3e-32 110.8 0.1 1.6 2 0 0 2 2 1 1 Integrase core domain LZ_Tnp_IS481 PF13011.6 AHV94631.1 - 7.7e-22 77.6 2.7 1.1e-19 70.7 0.4 2.6 1 1 1 2 2 2 1 leucine-zipper of insertion element IS481 rve_3 PF13683.6 AHV94631.1 - 5e-19 67.8 2.7 1.2e-18 66.6 2.7 1.7 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.6 AHV94631.1 - 6.1e-17 60.9 4.4 1.2e-07 31.3 0.1 2.7 2 0 0 2 2 2 2 Homeodomain-like domain HTH_28 PF13518.6 AHV94631.1 - 1.5e-15 57.1 6.5 5.9e-11 42.3 0.1 3.4 4 0 0 4 4 3 2 Helix-turn-helix domain HTH_29 PF13551.6 AHV94631.1 - 9.8e-12 44.7 0.6 2.6e-06 27.4 0.0 2.6 2 0 0 2 2 2 2 Winged helix-turn helix HTH_32 PF13565.6 AHV94631.1 - 9.4e-11 42.2 0.7 9.4e-11 42.2 0.7 2.4 2 1 0 2 2 2 1 Homeodomain-like domain HTH_38 PF13936.6 AHV94631.1 - 1.5e-06 27.9 0.6 5.1e-06 26.1 0.5 2.1 2 0 0 2 2 1 1 Helix-turn-helix domain MarR_2 PF12802.7 AHV94631.1 - 8e-06 25.6 3.1 9.5e-05 22.2 1.2 2.6 2 0 0 2 2 2 1 MarR family HTH_31 PF13560.6 AHV94631.1 - 1.4e-05 25.4 1.7 0.00059 20.1 0.4 3.2 3 0 0 3 3 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 AHV94631.1 - 3e-05 23.6 0.1 0.0064 16.1 0.3 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 AHV94631.1 - 4.6e-05 22.9 0.1 0.00056 19.4 0.2 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 YdaS_antitoxin PF15943.5 AHV94631.1 - 0.00022 21.0 0.2 0.24 11.3 0.0 2.8 2 0 0 2 2 2 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_Tnp_ISL3 PF13542.6 AHV94631.1 - 0.00023 20.5 8.5 0.002 17.5 0.6 3.9 4 0 0 4 4 3 1 Helix-turn-helix domain of transposase family ISL3 HTH_24 PF13412.6 AHV94631.1 - 0.00028 20.4 0.2 0.0021 17.6 0.3 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_3 PF01381.22 AHV94631.1 - 0.00032 20.7 0.7 0.013 15.5 0.3 2.5 2 0 0 2 2 2 1 Helix-turn-helix HTH_Crp_2 PF13545.6 AHV94631.1 - 0.0004 20.3 0.3 0.0027 17.6 0.2 2.3 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain Trp_repressor PF01371.19 AHV94631.1 - 0.00081 19.5 0.2 0.006 16.7 0.1 2.2 2 0 0 2 2 2 1 Trp repressor protein CENP-B_N PF04218.13 AHV94631.1 - 0.0016 18.0 0.0 1.6 8.5 0.1 2.3 2 0 0 2 2 2 1 CENP-B N-terminal DNA-binding domain LacI PF00356.21 AHV94631.1 - 0.0017 18.1 1.8 0.0046 16.7 0.7 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family Fe_dep_repress PF01325.19 AHV94631.1 - 0.002 18.3 0.0 0.034 14.4 0.1 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.20 AHV94631.1 - 0.0023 17.8 0.0 0.93 9.4 0.0 2.5 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 AHV94631.1 - 0.0025 17.6 1.3 0.035 13.9 0.7 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_psq PF05225.16 AHV94631.1 - 0.0025 17.5 0.7 2.3 8.0 0.4 2.9 3 0 0 3 3 3 1 helix-turn-helix, Psq domain HTH_11 PF08279.12 AHV94631.1 - 0.0026 17.7 0.4 0.015 15.3 0.5 2.2 2 0 0 2 2 2 1 HTH domain SpoIIID PF12116.8 AHV94631.1 - 0.0026 17.8 0.0 1.1 9.4 0.0 2.4 2 0 0 2 2 2 1 Stage III sporulation protein D HTH_AsnC-type PF13404.6 AHV94631.1 - 0.0036 17.1 2.7 0.045 13.6 1.1 2.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain RepB PF07506.11 AHV94631.1 - 0.0042 17.2 0.1 0.55 10.3 0.1 2.3 1 1 1 2 2 2 1 RepB plasmid partitioning protein HTH_17 PF12728.7 AHV94631.1 - 0.0043 17.2 0.7 6.1 7.1 0.0 3.3 3 1 0 3 3 3 0 Helix-turn-helix domain HTH_Tnp_1 PF01527.20 AHV94631.1 - 0.005 17.1 0.5 0.11 12.8 0.0 2.7 1 1 1 2 2 2 1 Transposase GntR PF00392.21 AHV94631.1 - 0.0053 16.4 0.8 0.5 10.1 0.3 2.5 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_10 PF04967.12 AHV94631.1 - 0.0077 16.0 0.1 0.049 13.4 0.2 2.2 2 0 0 2 2 2 1 HTH DNA binding domain HTH_35 PF13693.6 AHV94631.1 - 0.0093 16.0 1.5 0.073 13.1 0.6 2.7 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding UPF0175 PF03683.13 AHV94631.1 - 0.014 15.1 0.4 0.1 12.3 0.1 2.4 2 1 0 2 2 2 0 Uncharacterised protein family (UPF0175) HTH_30 PF13556.6 AHV94631.1 - 0.015 15.1 0.1 2 8.3 0.0 2.6 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain HTH_37 PF13744.6 AHV94631.1 - 0.016 15.2 0.1 0.13 12.3 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Tnp_4 PF13613.6 AHV94631.1 - 0.016 14.9 0.1 0.067 12.9 0.0 2.0 2 0 0 2 2 1 0 Helix-turn-helix of DDE superfamily endonuclease HTH_36 PF13730.6 AHV94631.1 - 0.02 14.8 0.1 0.58 10.2 0.0 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain KORA PF16509.5 AHV94631.1 - 0.034 14.4 0.1 3.6 8.0 0.0 3.0 3 0 0 3 3 3 0 TrfB plasmid transcriptional repressor MarR PF01047.22 AHV94631.1 - 0.045 13.7 0.1 0.14 12.1 0.1 1.8 2 0 0 2 2 1 0 MarR family DDE_Tnp_IS240 PF13610.6 AHV94631.1 - 0.048 13.9 0.1 0.071 13.3 0.1 1.3 1 0 0 1 1 1 0 DDE domain Crp PF00325.20 AHV94631.1 - 0.05 13.3 3.2 0.062 13.0 0.5 2.5 3 0 0 3 3 3 0 Bacterial regulatory proteins, crp family P22_Cro PF14549.6 AHV94631.1 - 0.051 13.4 1.6 9.6 6.1 0.1 2.5 2 0 0 2 2 2 0 DNA-binding transcriptional regulator Cro DUF746 PF05344.11 AHV94631.1 - 0.085 12.7 0.1 0.98 9.3 0.0 2.3 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) HTH_1 PF00126.27 AHV94631.1 - 0.1 12.5 2.8 4.7 7.2 0.5 2.6 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_26 PF13443.6 AHV94631.1 - 0.17 12.3 0.0 3.6 8.1 0.1 2.8 3 0 0 3 3 3 0 Cro/C1-type HTH DNA-binding domain HTH_8 PF02954.19 AHV94631.1 - 0.19 11.5 0.9 14 5.5 0.7 2.7 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family HTH_Tnp_Tc3_2 PF01498.18 AHV94631.1 - 0.27 11.5 2.6 0.47 10.7 0.1 2.6 3 0 0 3 3 1 0 Transposase HTH_33 PF13592.6 AHV94631.1 - 0.56 9.9 3.1 2.9 7.6 0.1 3.4 4 0 0 4 4 2 0 Winged helix-turn helix MerR PF00376.23 AHV94631.1 - 0.72 9.7 6.8 3.2 7.6 0.0 3.6 4 0 0 4 4 2 0 MerR family regulatory protein TPP_enzyme_C PF02775.21 AHV94632.1 - 1.3e-45 154.9 0.2 1.4e-45 154.8 0.2 1.0 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain XFP_N PF09364.10 AHV94632.1 - 0.0044 15.9 0.0 0.0058 15.5 0.0 1.2 1 0 0 1 1 1 1 XFP N-terminal domain EcoRI PF02963.16 AHV94632.1 - 0.16 11.0 0.0 0.19 10.7 0.0 1.1 1 0 0 1 1 1 0 Restriction endonuclease EcoRI ABC_tran PF00005.27 AHV94633.1 - 3e-10 40.8 0.0 3.7e-10 40.5 0.0 1.1 1 0 0 1 1 1 1 ABC transporter SbcCD_C PF13558.6 AHV94633.1 - 0.0025 18.0 0.8 0.029 14.6 0.8 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit TonB_dep_Rec PF00593.24 AHV94634.1 - 3.8e-14 53.4 6.3 4.1e-14 53.3 6.3 1.0 1 0 0 1 1 1 1 TonB dependent receptor OMP_b-brl PF13505.6 AHV94634.1 - 0.0089 16.2 2.4 0.0093 16.1 2.4 1.0 1 0 0 1 1 1 1 Outer membrane protein beta-barrel domain FAD_binding_4 PF01565.23 AHV94635.1 - 2e-20 72.9 0.4 4.5e-20 71.8 0.4 1.6 1 0 0 1 1 1 1 FAD binding domain FAD-oxidase_C PF02913.19 AHV94635.1 - 0.012 15.3 0.0 0.02 14.5 0.0 1.4 1 0 0 1 1 1 0 FAD linked oxidases, C-terminal domain ABC_tran PF00005.27 AHV94636.1 - 2.6e-23 83.0 0.0 4.3e-23 82.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 AHV94636.1 - 2.4e-09 37.5 0.3 0.002 18.0 0.1 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 AHV94636.1 - 0.00044 20.8 0.0 0.00065 20.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 AHV94636.1 - 0.00093 19.5 0.2 0.0073 16.6 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 AHV94636.1 - 0.0011 18.7 0.1 0.0022 17.7 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 AHV94636.1 - 0.0024 17.6 0.6 0.0087 15.8 0.6 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 AHV94636.1 - 0.0027 18.1 0.2 0.0039 17.6 0.2 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_27 PF13514.6 AHV94636.1 - 0.0029 17.2 0.0 0.0046 16.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.6 AHV94636.1 - 0.028 14.7 0.0 0.052 13.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 AHV94636.1 - 0.028 14.0 0.5 0.044 13.4 0.5 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain DLIC PF05783.11 AHV94636.1 - 0.046 12.6 0.0 0.063 12.1 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) SMC_N PF02463.19 AHV94636.1 - 0.06 12.8 0.1 0.51 9.7 0.1 2.2 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_19 PF13245.6 AHV94636.1 - 0.097 13.0 0.1 0.21 11.9 0.0 1.5 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 AHV94636.1 - 0.16 11.9 0.0 0.26 11.2 0.0 1.3 1 0 0 1 1 1 0 NACHT domain DJ-1_PfpI PF01965.24 AHV94637.1 - 6.9e-17 61.7 0.0 4e-16 59.3 0.0 2.0 1 1 0 1 1 1 1 DJ-1/PfpI family ThiJ_like PF17124.5 AHV94637.1 - 2.9e-07 30.4 0.0 1.8e-05 24.5 0.0 2.1 1 1 0 1 1 1 1 ThiJ/PfpI family-like DHDPS PF00701.22 AHV94638.1 - 5e-35 120.6 0.0 6.1e-35 120.3 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family Metallophos_2 PF12850.7 AHV94638.1 - 0.19 11.9 0.0 0.29 11.3 0.0 1.2 1 0 0 1 1 1 0 Calcineurin-like phosphoesterase superfamily domain CPSase_L_D2 PF02786.17 AHV94639.1 - 4.4e-62 209.3 0.0 6.9e-62 208.7 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Biotin_carb_C PF02785.19 AHV94639.1 - 8.8e-35 119.1 0.0 2.4e-34 117.6 0.0 1.8 2 0 0 2 2 2 1 Biotin carboxylase C-terminal domain Biotin_lipoyl PF00364.22 AHV94639.1 - 1.5e-18 66.4 0.6 4.8e-18 64.7 0.6 1.9 1 0 0 1 1 1 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 AHV94639.1 - 5.5e-07 29.3 0.6 0.00074 19.3 0.1 2.8 1 1 1 2 2 2 2 Biotin-lipoyl like Dala_Dala_lig_C PF07478.13 AHV94639.1 - 8.3e-06 25.5 0.0 1.9e-05 24.3 0.0 1.5 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus HlyD_3 PF13437.6 AHV94639.1 - 0.0013 19.4 0.3 0.59 10.9 0.0 2.8 2 0 0 2 2 2 1 HlyD family secretion protein ATP-grasp PF02222.22 AHV94639.1 - 0.0014 18.3 0.1 0.0032 17.1 0.1 1.5 1 0 0 1 1 1 1 ATP-grasp domain NQRA PF05896.11 AHV94639.1 - 0.0024 17.4 0.1 0.0039 16.7 0.1 1.3 1 0 0 1 1 1 1 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) RnfC_N PF13375.6 AHV94639.1 - 0.0038 17.2 0.2 0.014 15.4 0.2 1.9 1 0 0 1 1 1 1 RnfC Barrel sandwich hybrid domain HlyD_D23 PF16576.5 AHV94639.1 - 0.0089 15.3 0.3 2.7 7.1 0.1 2.5 1 1 1 2 2 2 2 Barrel-sandwich domain of CusB or HlyD membrane-fusion GCV_H PF01597.19 AHV94639.1 - 0.095 12.6 0.0 0.2 11.5 0.0 1.5 1 0 0 1 1 1 0 Glycine cleavage H-protein PTS_EIIA_1 PF00358.20 AHV94639.1 - 0.14 12.0 0.1 1.5 8.6 0.1 2.2 1 1 0 1 1 1 0 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LysR_substrate PF03466.20 AHV94640.1 - 1.6e-31 109.3 0.3 2.7e-31 108.6 0.3 1.2 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 AHV94640.1 - 3.4e-17 62.1 0.1 6e-17 61.3 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_30 PF13556.6 AHV94640.1 - 0.12 12.2 0.3 0.61 9.9 0.1 2.3 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain Limkain-b1 PF11608.8 AHV94640.1 - 0.18 11.9 0.0 0.38 10.9 0.0 1.5 1 0 0 1 1 1 0 Limkain b1 rve PF00665.26 AHV94641.1 - 2.7e-32 111.4 0.7 4.3e-32 110.8 0.1 1.6 2 0 0 2 2 1 1 Integrase core domain LZ_Tnp_IS481 PF13011.6 AHV94641.1 - 7.8e-22 77.6 2.7 1.1e-19 70.7 0.4 2.6 1 1 1 2 2 2 1 leucine-zipper of insertion element IS481 rve_3 PF13683.6 AHV94641.1 - 1.9e-18 66.0 3.1 4.4e-18 64.8 3.1 1.7 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.6 AHV94641.1 - 6.1e-17 60.9 4.4 1.2e-07 31.3 0.1 2.7 2 0 0 2 2 2 2 Homeodomain-like domain HTH_28 PF13518.6 AHV94641.1 - 1.4e-15 57.1 6.5 5.9e-11 42.3 0.1 3.4 4 0 0 4 4 3 2 Helix-turn-helix domain HTH_29 PF13551.6 AHV94641.1 - 9.6e-12 44.8 0.6 2.6e-06 27.4 0.0 2.6 2 0 0 2 2 2 2 Winged helix-turn helix HTH_32 PF13565.6 AHV94641.1 - 7.8e-11 42.4 3.4 9.4e-11 42.2 0.7 2.4 2 0 0 2 2 2 1 Homeodomain-like domain HTH_38 PF13936.6 AHV94641.1 - 1.5e-06 27.9 0.6 5.1e-06 26.1 0.5 2.1 2 0 0 2 2 1 1 Helix-turn-helix domain MarR_2 PF12802.7 AHV94641.1 - 8.1e-06 25.6 3.1 9.5e-05 22.2 1.2 2.6 2 0 0 2 2 2 1 MarR family HTH_31 PF13560.6 AHV94641.1 - 1.4e-05 25.3 1.7 0.00059 20.1 0.4 3.2 3 0 0 3 3 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 AHV94641.1 - 3e-05 23.6 0.1 0.0064 16.1 0.3 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 AHV94641.1 - 4.9e-05 22.8 0.1 0.00056 19.4 0.2 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 YdaS_antitoxin PF15943.5 AHV94641.1 - 0.00023 21.0 0.2 0.24 11.3 0.0 2.8 2 0 0 2 2 2 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_24 PF13412.6 AHV94641.1 - 0.00028 20.4 0.2 0.0021 17.6 0.3 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_Tnp_ISL3 PF13542.6 AHV94641.1 - 0.00029 20.2 8.7 0.002 17.5 0.6 3.9 4 0 0 4 4 3 1 Helix-turn-helix domain of transposase family ISL3 HTH_3 PF01381.22 AHV94641.1 - 0.00032 20.7 0.7 0.013 15.5 0.3 2.5 2 0 0 2 2 2 1 Helix-turn-helix HTH_Crp_2 PF13545.6 AHV94641.1 - 0.00041 20.3 0.3 0.0027 17.6 0.2 2.3 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain Trp_repressor PF01371.19 AHV94641.1 - 0.00081 19.5 0.2 0.006 16.7 0.1 2.2 2 0 0 2 2 2 1 Trp repressor protein CENP-B_N PF04218.13 AHV94641.1 - 0.0016 18.0 0.0 1.6 8.5 0.1 2.3 2 0 0 2 2 2 1 CENP-B N-terminal DNA-binding domain LacI PF00356.21 AHV94641.1 - 0.0017 18.1 1.8 0.0046 16.7 0.7 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family Fe_dep_repress PF01325.19 AHV94641.1 - 0.002 18.3 0.0 0.034 14.4 0.1 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.20 AHV94641.1 - 0.0023 17.8 0.0 0.93 9.4 0.0 2.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 AHV94641.1 - 0.0025 17.6 1.3 0.035 13.9 0.7 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_psq PF05225.16 AHV94641.1 - 0.0025 17.5 0.7 2.3 8.0 0.4 2.9 3 0 0 3 3 3 1 helix-turn-helix, Psq domain HTH_11 PF08279.12 AHV94641.1 - 0.0026 17.7 0.4 0.015 15.3 0.5 2.2 2 0 0 2 2 2 1 HTH domain SpoIIID PF12116.8 AHV94641.1 - 0.0026 17.8 0.0 1.1 9.4 0.0 2.4 2 0 0 2 2 2 1 Stage III sporulation protein D HTH_17 PF12728.7 AHV94641.1 - 0.0035 17.5 0.9 6.1 7.1 0.0 3.5 4 1 0 4 4 3 0 Helix-turn-helix domain HTH_AsnC-type PF13404.6 AHV94641.1 - 0.0037 17.1 2.7 0.045 13.6 1.1 2.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain RepB PF07506.11 AHV94641.1 - 0.0042 17.2 0.1 0.55 10.3 0.1 2.3 1 1 1 2 2 2 1 RepB plasmid partitioning protein GntR PF00392.21 AHV94641.1 - 0.0053 16.4 0.8 0.5 10.1 0.3 2.5 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_Tnp_1 PF01527.20 AHV94641.1 - 0.0057 16.9 0.5 0.11 12.8 0.0 2.6 1 1 1 2 2 2 1 Transposase HTH_10 PF04967.12 AHV94641.1 - 0.0077 16.0 0.1 0.049 13.4 0.2 2.2 2 0 0 2 2 2 1 HTH DNA binding domain HTH_35 PF13693.6 AHV94641.1 - 0.0094 16.0 1.5 0.073 13.1 0.6 2.7 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding UPF0175 PF03683.13 AHV94641.1 - 0.014 15.1 0.4 0.1 12.3 0.1 2.4 2 1 0 2 2 2 0 Uncharacterised protein family (UPF0175) HTH_30 PF13556.6 AHV94641.1 - 0.015 15.1 0.1 2 8.3 0.0 2.6 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain HTH_37 PF13744.6 AHV94641.1 - 0.016 15.2 0.1 0.13 12.3 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Tnp_4 PF13613.6 AHV94641.1 - 0.016 14.9 0.1 0.067 12.9 0.0 2.0 2 0 0 2 2 1 0 Helix-turn-helix of DDE superfamily endonuclease HTH_36 PF13730.6 AHV94641.1 - 0.02 14.8 0.1 0.58 10.2 0.0 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain KORA PF16509.5 AHV94641.1 - 0.035 14.4 0.1 3.6 8.0 0.0 3.0 3 0 0 3 3 3 0 TrfB plasmid transcriptional repressor MarR PF01047.22 AHV94641.1 - 0.045 13.7 0.1 0.14 12.1 0.1 1.8 2 0 0 2 2 1 0 MarR family P22_Cro PF14549.6 AHV94641.1 - 0.051 13.4 1.6 9.6 6.1 0.1 2.5 2 0 0 2 2 2 0 DNA-binding transcriptional regulator Cro Crp PF00325.20 AHV94641.1 - 0.052 13.2 3.2 0.062 13.0 0.5 2.5 3 0 0 3 3 3 0 Bacterial regulatory proteins, crp family DDE_Tnp_IS240 PF13610.6 AHV94641.1 - 0.065 13.5 0.1 0.096 12.9 0.1 1.3 1 0 0 1 1 1 0 DDE domain DUF746 PF05344.11 AHV94641.1 - 0.085 12.7 0.1 0.98 9.3 0.0 2.3 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) HTH_1 PF00126.27 AHV94641.1 - 0.1 12.5 2.8 4.7 7.2 0.5 2.6 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_26 PF13443.6 AHV94641.1 - 0.17 12.3 0.0 3.6 8.1 0.1 2.8 3 0 0 3 3 3 0 Cro/C1-type HTH DNA-binding domain HTH_8 PF02954.19 AHV94641.1 - 0.19 11.5 0.9 14 5.5 0.7 2.7 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family HTH_Tnp_Tc3_2 PF01498.18 AHV94641.1 - 0.27 11.5 2.6 0.47 10.7 0.1 2.6 3 0 0 3 3 1 0 Transposase HTH_33 PF13592.6 AHV94641.1 - 0.56 9.9 3.1 2.9 7.6 0.1 3.4 4 0 0 4 4 2 0 Winged helix-turn helix MerR PF00376.23 AHV94641.1 - 0.73 9.7 6.8 3.2 7.6 0.0 3.6 4 0 0 4 4 2 0 MerR family regulatory protein GST_C_4 PF14834.6 AHV94642.1 - 1e-33 116.2 4.6 1.5e-33 115.6 4.6 1.2 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_N PF02798.20 AHV94642.1 - 4e-14 52.7 0.0 2e-13 50.5 0.0 2.0 2 0 0 2 2 2 1 Glutathione S-transferase, N-terminal domain GST_N_3 PF13417.6 AHV94642.1 - 1.8e-13 50.7 0.0 3.9e-13 49.6 0.0 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.6 AHV94642.1 - 2.3e-11 43.8 0.0 4.4e-11 42.9 0.0 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_C_3 PF14497.6 AHV94642.1 - 0.015 15.5 0.0 0.034 14.3 0.0 1.6 1 0 0 1 1 1 0 Glutathione S-transferase, C-terminal domain GST_C_2 PF13410.6 AHV94642.1 - 0.055 13.5 4.3 0.21 11.6 3.5 2.2 1 1 1 2 2 2 0 Glutathione S-transferase, C-terminal domain Tom37 PF10568.9 AHV94642.1 - 0.11 12.8 0.0 0.2 11.9 0.0 1.5 1 1 0 1 1 1 0 Outer mitochondrial membrane transport complex protein rve_3 PF13683.6 AHV94643.1 - 8.3e-32 108.8 0.1 4.5e-31 106.4 0.0 2.2 2 0 0 2 2 2 1 Integrase core domain rve PF00665.26 AHV94643.1 - 4.2e-25 88.2 0.0 1.1e-23 83.7 0.0 2.2 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 AHV94643.1 - 1.8e-11 44.0 8.6 3.6e-11 43.0 8.6 1.5 1 0 0 1 1 1 1 HTH-like domain rve_2 PF13333.6 AHV94643.1 - 5.8e-07 29.6 0.0 1.3e-06 28.5 0.0 1.6 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AHV94643.1 - 0.00041 20.6 0.0 0.00091 19.5 0.0 1.6 1 1 1 2 2 2 1 DDE domain Rhomboid_SP PF12595.8 AHV94643.1 - 0.0081 15.6 0.3 2.2 7.6 0.0 2.3 1 1 0 2 2 2 2 Rhomboid serine protease DUF1780 PF08682.10 AHV94643.1 - 0.13 11.9 1.0 1.6 8.3 0.3 2.2 2 0 0 2 2 2 0 Putative endonuclease, protein of unknown function (DUF1780) MarR_2 PF12802.7 AHV94644.1 - 6e-12 45.3 0.1 1.3e-11 44.2 0.1 1.6 1 0 0 1 1 1 1 MarR family MarR PF01047.22 AHV94644.1 - 1.6e-07 31.1 0.0 3.2e-07 30.2 0.0 1.5 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.6 AHV94644.1 - 6.9e-06 26.5 0.0 1.9e-05 25.1 0.0 1.7 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_IclR PF09339.10 AHV94644.1 - 1.8e-05 24.4 0.1 6.1e-05 22.7 0.0 1.8 2 0 0 2 2 2 1 IclR helix-turn-helix domain TrmB PF01978.19 AHV94644.1 - 0.0053 16.6 0.0 0.011 15.6 0.0 1.6 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 AHV94644.1 - 0.0077 15.8 0.0 0.014 14.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 AHV94644.1 - 0.013 15.5 0.0 0.032 14.3 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Crp_2 PF13545.6 AHV94644.1 - 0.014 15.4 0.0 0.029 14.4 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_5 PF01022.20 AHV94644.1 - 0.06 13.2 0.0 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Rrf2 PF02082.20 AHV94644.1 - 0.068 13.5 0.0 0.2 12.0 0.0 1.8 2 0 0 2 2 2 0 Transcriptional regulator LZ_Tnp_IS481 PF13011.6 AHV94645.1 - 1.3e-22 80.1 2.6 3e-20 72.5 0.4 2.3 1 1 1 2 2 2 1 leucine-zipper of insertion element IS481 HTH_23 PF13384.6 AHV94645.1 - 1.4e-17 63.0 4.4 4.4e-08 32.7 0.1 2.4 2 0 0 2 2 2 2 Homeodomain-like domain HTH_28 PF13518.6 AHV94645.1 - 6.6e-17 61.4 2.6 2.1e-11 43.8 0.1 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_29 PF13551.6 AHV94645.1 - 1.7e-12 47.2 0.6 9.2e-07 28.8 0.0 2.4 2 0 0 2 2 2 2 Winged helix-turn helix HTH_32 PF13565.6 AHV94645.1 - 3e-11 43.8 0.7 3e-11 43.8 0.7 1.7 2 0 0 2 2 1 1 Homeodomain-like domain HTH_38 PF13936.6 AHV94645.1 - 1.4e-06 27.9 2.0 3.5e-06 26.7 1.2 2.1 2 1 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 AHV94645.1 - 2.6e-06 27.2 3.6 3.9e-05 23.5 1.3 2.4 2 0 0 2 2 2 1 MarR family HTH_Tnp_ISL3 PF13542.6 AHV94645.1 - 2.7e-06 26.7 1.8 0.00081 18.7 0.6 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 Sigma70_r4_2 PF08281.12 AHV94645.1 - 6.6e-06 25.7 0.1 0.0026 17.4 0.3 2.3 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 AHV94645.1 - 1.3e-05 24.6 0.1 0.00023 20.6 0.2 2.3 2 0 0 2 2 2 1 Sigma-70, region 4 YdaS_antitoxin PF15943.5 AHV94645.1 - 5.4e-05 23.0 0.2 0.1 12.5 0.0 2.6 2 1 0 2 2 2 2 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_24 PF13412.6 AHV94645.1 - 7.3e-05 22.3 0.2 0.0009 18.8 0.3 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_3 PF01381.22 AHV94645.1 - 7.5e-05 22.7 0.7 0.0058 16.7 0.3 2.5 2 0 0 2 2 2 1 Helix-turn-helix HTH_Crp_2 PF13545.6 AHV94645.1 - 0.00013 21.8 0.9 0.0014 18.5 0.4 2.5 2 1 0 2 2 2 1 Crp-like helix-turn-helix domain Trp_repressor PF01371.19 AHV94645.1 - 0.00022 21.3 0.1 0.0024 17.9 0.1 2.0 2 0 0 2 2 2 1 Trp repressor protein LacI PF00356.21 AHV94645.1 - 0.00028 20.6 1.0 0.0018 18.0 0.6 2.3 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family CENP-B_N PF04218.13 AHV94645.1 - 0.00031 20.3 0.0 0.68 9.6 0.1 2.3 2 0 0 2 2 2 2 CENP-B N-terminal DNA-binding domain HTH_5 PF01022.20 AHV94645.1 - 0.00037 20.3 0.0 0.38 10.6 0.0 2.6 3 0 0 3 3 2 1 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.19 AHV94645.1 - 0.00042 20.4 0.0 0.013 15.7 0.0 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain SpoIIID PF12116.8 AHV94645.1 - 0.00053 20.0 0.0 0.38 10.9 0.0 2.2 2 0 0 2 2 2 1 Stage III sporulation protein D HTH_31 PF13560.6 AHV94645.1 - 0.00056 20.2 1.6 0.00056 20.2 1.6 3.3 3 2 1 4 4 2 1 Helix-turn-helix domain HTH_IclR PF09339.10 AHV94645.1 - 0.00057 19.6 1.6 0.015 15.1 0.7 2.6 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_11 PF08279.12 AHV94645.1 - 0.00061 19.7 0.5 0.0061 16.5 0.5 2.4 2 0 0 2 2 2 1 HTH domain RepB PF07506.11 AHV94645.1 - 0.00074 19.7 0.2 0.2 11.7 0.1 2.1 1 1 1 2 2 2 1 RepB plasmid partitioning protein HTH_psq PF05225.16 AHV94645.1 - 0.001 18.8 0.5 0.97 9.2 0.5 2.3 2 0 0 2 2 2 1 helix-turn-helix, Psq domain GntR PF00392.21 AHV94645.1 - 0.001 18.7 0.7 0.19 11.4 0.3 2.5 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_AsnC-type PF13404.6 AHV94645.1 - 0.0012 18.6 3.1 0.023 14.5 1.4 2.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_17 PF12728.7 AHV94645.1 - 0.0016 18.6 0.1 2.8 8.2 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Tnp_1 PF01527.20 AHV94645.1 - 0.0016 18.7 0.5 0.037 14.4 0.0 2.2 1 1 1 2 2 2 1 Transposase HTH_30 PF13556.6 AHV94645.1 - 0.0029 17.4 0.1 0.71 9.7 0.0 2.5 2 0 0 2 2 2 1 PucR C-terminal helix-turn-helix domain HTH_10 PF04967.12 AHV94645.1 - 0.003 17.3 0.1 0.021 14.6 0.2 2.1 2 0 0 2 2 2 1 HTH DNA binding domain HTH_35 PF13693.6 AHV94645.1 - 0.0032 17.5 0.8 0.026 14.5 0.5 2.1 1 1 1 2 2 2 1 Winged helix-turn-helix DNA-binding UPF0175 PF03683.13 AHV94645.1 - 0.0034 17.1 0.4 0.037 13.7 0.1 2.3 2 1 1 3 3 3 1 Uncharacterised protein family (UPF0175) HTH_37 PF13744.6 AHV94645.1 - 0.0042 17.0 0.1 0.049 13.6 0.1 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Tnp_4 PF13613.6 AHV94645.1 - 0.0064 16.2 0.1 0.029 14.1 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix of DDE superfamily endonuclease Crp PF00325.20 AHV94645.1 - 0.0084 15.7 1.5 0.028 14.1 0.5 2.3 2 0 0 2 2 2 1 Bacterial regulatory proteins, crp family HTH_36 PF13730.6 AHV94645.1 - 0.012 15.5 0.0 0.23 11.4 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain MarR PF01047.22 AHV94645.1 - 0.014 15.3 0.1 0.062 13.2 0.1 2.1 2 1 0 2 2 2 0 MarR family P22_Cro PF14549.6 AHV94645.1 - 0.017 15.0 2.0 3.9 7.4 0.1 2.3 2 0 0 2 2 2 0 DNA-binding transcriptional regulator Cro DUF746 PF05344.11 AHV94645.1 - 0.02 14.7 0.1 0.41 10.5 0.0 2.3 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) HTH_DeoR PF08220.12 AHV94645.1 - 0.023 14.4 0.1 4.2 7.2 0.0 2.5 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain HTH_1 PF00126.27 AHV94645.1 - 0.025 14.5 2.9 2 8.5 0.5 2.5 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_8 PF02954.19 AHV94645.1 - 0.049 13.4 0.9 6.3 6.7 0.8 2.5 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family Sigma54_DBD PF04552.13 AHV94645.1 - 0.074 12.8 0.1 0.12 12.0 0.1 1.3 1 0 0 1 1 1 0 Sigma-54, DNA binding domain TrmB PF01978.19 AHV94645.1 - 0.077 12.9 0.0 0.26 11.2 0.1 1.8 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_7 PF02796.15 AHV94645.1 - 0.079 13.1 0.4 0.21 11.7 0.1 1.8 2 0 0 2 2 1 0 Helix-turn-helix domain of resolvase DUF1804 PF08822.11 AHV94645.1 - 0.079 12.9 0.2 7.6 6.5 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1804) HTH_26 PF13443.6 AHV94645.1 - 0.094 13.2 0.0 1.4 9.4 0.1 2.3 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain MerR_1 PF13411.6 AHV94645.1 - 0.11 12.7 0.7 1.1 9.4 0.0 2.6 3 0 0 3 3 2 0 MerR HTH family regulatory protein KORA PF16509.5 AHV94645.1 - 0.11 12.8 0.1 1.3 9.3 0.0 2.1 2 0 0 2 2 2 0 TrfB plasmid transcriptional repressor HTH_40 PF14493.6 AHV94645.1 - 0.13 12.8 0.0 1.4 9.4 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain Glyc_hyd_38C_2 PF18230.1 AHV94645.1 - 0.17 12.0 0.0 0.48 10.6 0.0 1.7 2 0 0 2 2 1 0 Glycosyl hydrolases family 38 C-terminal sub-domain HTH_Tnp_Tc3_2 PF01498.18 AHV94645.1 - 0.18 12.1 0.1 0.18 12.1 0.1 2.5 4 0 0 4 4 2 0 Transposase HTH_33 PF13592.6 AHV94645.1 - 0.28 10.9 1.4 1.2 8.8 0.1 2.7 4 1 0 4 4 2 0 Winged helix-turn helix MerR PF00376.23 AHV94645.1 - 0.37 10.6 7.8 1.5 8.7 0.0 3.4 4 0 0 4 4 3 0 MerR family regulatory protein PhnI PF05861.12 AHV94646.1 - 0.036 12.9 0.2 0.045 12.6 0.2 1.1 1 0 0 1 1 1 0 Bacterial phosphonate metabolism protein (PhnI) Gly-zipper_Omp PF13488.6 AHV94646.1 - 0.056 13.4 6.2 0.13 12.3 6.2 1.6 1 0 0 1 1 1 0 Glycine zipper Rick_17kDa_Anti PF05433.15 AHV94646.1 - 0.09 12.7 5.3 0.24 11.3 4.6 2.0 2 0 0 2 2 2 0 Glycine zipper 2TM domain DUF1269 PF06897.12 AHV94646.1 - 0.56 10.5 2.7 0.85 9.9 2.7 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1269) Gly-zipper_YMGG PF13441.6 AHV94646.1 - 0.63 9.8 9.7 0.19 11.5 6.4 1.8 2 0 0 2 2 2 0 YMGG-like Gly-zipper ABC_tran PF00005.27 AHV94647.1 - 6.3e-32 111.0 0.0 8.2e-32 110.6 0.0 1.1 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.8 AHV94647.1 - 1.5e-11 43.9 0.0 2.8e-11 43.0 0.0 1.5 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_21 PF13304.6 AHV94647.1 - 9.2e-06 25.7 1.4 0.0049 16.7 0.2 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 AHV94647.1 - 1.4e-05 25.7 0.5 2.6e-05 24.8 0.1 1.6 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.19 AHV94647.1 - 0.001 18.6 0.3 0.095 12.1 0.1 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 AHV94647.1 - 0.0034 17.7 0.5 0.091 13.0 0.5 2.3 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 AHV94647.1 - 0.0053 16.5 0.0 0.012 15.4 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 AHV94647.1 - 0.0061 16.3 0.1 0.6 9.7 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_27 PF13514.6 AHV94647.1 - 0.0099 15.5 0.0 0.018 14.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.6 AHV94647.1 - 0.014 15.0 0.3 0.62 9.6 0.3 2.3 1 1 0 1 1 1 0 AAA domain ABC_ATPase PF09818.9 AHV94647.1 - 0.014 14.2 0.0 0.18 10.6 0.0 2.0 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_30 PF13604.6 AHV94647.1 - 0.033 13.9 0.0 0.079 12.7 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 AHV94647.1 - 0.038 14.4 0.1 0.083 13.3 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain IstB_IS21 PF01695.17 AHV94647.1 - 0.12 12.2 0.1 6 6.6 0.0 2.3 2 0 0 2 2 2 0 IstB-like ATP binding protein Sugar_tr PF00083.24 AHV94648.1 - 1.9e-31 109.5 24.8 1e-23 84.0 3.3 3.1 2 1 1 3 3 3 3 Sugar (and other) transporter MFS_1 PF07690.16 AHV94648.1 - 1.2e-25 90.2 22.0 1.2e-25 90.2 22.0 2.1 2 0 0 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 AHV94648.1 - 0.00071 18.5 12.6 0.0081 15.1 1.4 2.6 2 1 0 3 3 3 2 MFS_1 like family DUF2721 PF11026.8 AHV94648.1 - 0.55 10.1 0.0 0.55 10.1 0.0 3.0 5 0 0 5 5 5 0 Protein of unknown function (DUF2721) Ribosomal_S5_C PF03719.15 AHV94649.1 - 1.1e-28 98.4 0.3 1.9e-28 97.7 0.3 1.4 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_S5 PF00333.20 AHV94649.1 - 1.9e-24 85.4 4.4 3.1e-24 84.7 4.4 1.4 1 0 0 1 1 1 1 Ribosomal protein S5, N-terminal domain Glycos_transf_1 PF00534.20 AHV94650.1 - 3.1e-31 108.2 0.0 4.3e-31 107.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 AHV94650.1 - 8.8e-29 100.6 0.4 1.7e-28 99.7 0.4 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 AHV94650.1 - 5.8e-25 87.9 0.0 9.2e-25 87.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_4_4 PF13579.6 AHV94650.1 - 4.7e-14 53.1 7.2 4.7e-14 53.1 7.2 2.6 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.6 AHV94650.1 - 2.7e-12 47.0 1.1 5.2e-12 46.1 1.1 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 AHV94650.1 - 2e-11 44.1 0.1 7.2e-11 42.3 0.1 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 SPOR PF05036.13 AHV94651.1 - 3.9e-17 62.4 2.2 3.9e-17 62.4 2.2 2.1 2 0 0 2 2 2 1 Sporulation related domain V-ATPase_G_2 PF16999.5 AHV94651.1 - 0.069 13.6 0.2 0.19 12.2 0.2 1.7 1 0 0 1 1 1 0 Vacuolar (H+)-ATPase G subunit cNMP_binding PF00027.29 AHV94653.1 - 1.1e-14 54.3 0.0 1.5e-14 53.8 0.0 1.2 1 0 0 1 1 1 1 Cyclic nucleotide-binding domain Cupin_2 PF07883.11 AHV94653.1 - 0.00014 21.5 0.2 0.00023 20.8 0.2 1.3 1 0 0 1 1 1 1 Cupin domain TetR PF13972.6 AHV94653.1 - 0.065 13.0 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 Bacterial transcriptional repressor TOBE PF03459.17 AHV94654.1 - 6e-33 112.9 6.8 2.1e-17 63.2 1.1 2.3 2 0 0 2 2 2 2 TOBE domain HTH_1 PF00126.27 AHV94654.1 - 9.8e-15 54.3 0.2 1.7e-14 53.5 0.2 1.4 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family TOBE_2 PF08402.10 AHV94654.1 - 0.0041 17.2 0.4 0.18 12.0 0.1 2.6 2 0 0 2 2 2 1 TOBE domain Rieske PF00355.26 AHV94655.1 - 3e-12 46.3 0.0 4.3e-12 45.8 0.0 1.2 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain AMP-binding PF00501.28 AHV94656.1 - 3.5e-59 200.5 0.0 1.1e-54 185.7 0.0 2.1 1 1 1 2 2 2 2 AMP-binding enzyme AMP-binding_C PF13193.6 AHV94656.1 - 0.013 16.4 0.2 0.09 13.8 0.0 2.2 2 0 0 2 2 2 0 AMP-binding enzyme C-terminal domain ECH_1 PF00378.20 AHV94657.1 - 3.7e-59 200.1 0.0 4.5e-59 199.8 0.0 1.1 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 AHV94657.1 - 1.9e-26 93.4 1.2 1e-25 91.0 1.2 2.0 1 1 0 1 1 1 1 Enoyl-CoA hydratase/isomerase Peptidase_S49 PF01343.18 AHV94657.1 - 0.0017 18.3 0.0 0.05 13.5 0.0 2.4 2 0 0 2 2 2 1 Peptidase family S49 Peptidase_M48 PF01435.18 AHV94658.1 - 5.7e-28 98.0 0.1 7.7e-28 97.6 0.1 1.1 1 0 0 1 1 1 1 Peptidase family M48 DUF2268 PF10026.9 AHV94658.1 - 0.14 11.7 0.0 0.23 11.0 0.0 1.3 1 0 0 1 1 1 0 Predicted Zn-dependent protease (DUF2268) ABC2_membrane_3 PF12698.7 AHV94659.1 - 1.3e-45 156.1 4.0 1.5e-45 155.8 4.0 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 AHV94659.1 - 2.2e-33 115.5 16.4 6.6e-32 110.6 13.7 2.2 2 0 0 2 2 2 2 ABC-2 type transporter ABC2_membrane_2 PF12679.7 AHV94659.1 - 3.6e-27 95.4 8.4 4.5e-27 95.1 8.4 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 AHV94659.1 - 8.7e-13 48.6 6.2 6.2e-11 42.6 4.3 2.3 2 0 0 2 2 2 2 ABC-2 family transporter protein EIIA-man PF03610.16 AHV94660.1 - 2.7e-18 66.3 0.0 3.2e-18 66.1 0.0 1.0 1 0 0 1 1 1 1 PTS system fructose IIA component DUF3618 PF12277.8 AHV94660.1 - 0.2 12.0 2.1 1.2 9.5 0.5 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3618) LysR_substrate PF03466.20 AHV94661.1 - 8.2e-37 126.6 9.8 8.2e-37 126.6 9.8 1.5 2 0 0 2 2 2 1 LysR substrate binding domain HTH_1 PF00126.27 AHV94661.1 - 1.1e-15 57.3 0.8 1.1e-15 57.3 0.8 2.5 3 0 0 3 3 3 1 Bacterial regulatory helix-turn-helix protein, lysR family SBP_bac_11 PF13531.6 AHV94661.1 - 0.0032 17.2 0.5 0.13 12.0 0.0 2.2 1 1 1 2 2 2 2 Bacterial extracellular solute-binding protein BioY PF02632.14 AHV94662.1 - 7.7e-18 64.9 14.2 6.7e-10 39.1 1.0 2.4 3 0 0 3 3 3 2 BioY family ECF-ribofla_trS PF07155.12 AHV94662.1 - 1.8e-07 31.3 2.4 1.8e-07 31.3 2.4 1.8 2 0 0 2 2 2 1 ECF-type riboflavin transporter, S component ECF_trnsprt PF12822.7 AHV94662.1 - 2.4e-06 27.8 12.0 4.4e-06 26.9 12.0 1.5 1 1 0 1 1 1 1 ECF transporter, substrate-specific component 5TM-5TMR_LYT PF07694.12 AHV94662.1 - 0.15 11.5 7.8 0.3 10.6 7.8 1.7 1 1 0 1 1 1 0 5TMR of 5TMR-LYT ThiW PF09512.10 AHV94662.1 - 0.16 12.1 10.8 0.044 13.9 6.9 1.7 1 1 0 1 1 1 0 Thiamine-precursor transporter protein (ThiW) CbiM PF01891.16 AHV94662.1 - 0.19 11.6 14.7 0.61 9.9 14.7 1.8 1 1 0 1 1 1 0 Cobalt uptake substrate-specific transmembrane region Thia_YuaJ PF09515.10 AHV94662.1 - 4.7 7.2 9.0 0.6 10.1 5.0 1.5 2 0 0 2 2 2 0 Thiamine transporter protein (Thia_YuaJ) Chorismate_bind PF00425.18 AHV94663.1 - 1.3e-92 310.1 0.0 1.8e-92 309.5 0.0 1.2 1 0 0 1 1 1 1 chorismate binding enzyme Anth_synt_I_N PF04715.13 AHV94663.1 - 1.5e-29 103.0 0.0 4.6e-27 95.0 0.0 2.5 2 0 0 2 2 2 2 Anthranilate synthase component I, N terminal region RNase_H PF00075.24 AHV94664.1 - 7.9e-39 133.1 0.0 8.3e-39 133.0 0.0 1.0 1 0 0 1 1 1 1 RNase H YidC_periplas PF14849.6 AHV94665.1 - 2.7e-81 273.6 0.2 3.3e-81 273.3 0.2 1.1 1 0 0 1 1 1 1 YidC periplasmic domain 60KD_IMP PF02096.20 AHV94665.1 - 3.8e-57 192.8 5.5 5.3e-57 192.3 5.5 1.2 1 0 0 1 1 1 1 60Kd inner membrane protein TPP_enzyme_N PF02776.18 AHV94666.1 - 7.9e-36 123.3 0.5 1.3e-35 122.5 0.5 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Thymidylate_kin PF02223.17 AHV94667.1 - 1.1e-50 171.9 0.0 1.4e-50 171.6 0.0 1.0 1 0 0 1 1 1 1 Thymidylate kinase AAA_28 PF13521.6 AHV94667.1 - 1.6e-06 28.4 0.4 2e-06 28.1 0.4 1.1 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 AHV94667.1 - 0.004 17.4 0.4 0.59 10.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain MeaB PF03308.16 AHV94667.1 - 0.028 13.4 0.2 0.044 12.8 0.2 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_30 PF13604.6 AHV94667.1 - 0.033 13.9 0.1 0.08 12.6 0.1 1.7 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 AHV94667.1 - 0.099 13.2 0.0 0.17 12.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain COesterase PF00135.28 AHV94668.1 - 3.1e-80 270.5 0.0 3.9e-80 270.2 0.0 1.0 1 0 0 1 1 1 1 Carboxylesterase family Abhydrolase_3 PF07859.13 AHV94668.1 - 0.00011 22.2 9.6 0.00034 20.5 5.7 2.9 2 1 0 2 2 2 1 alpha/beta hydrolase fold Lipoprotein_15 PF03640.15 AHV94669.1 - 3.3e-37 125.8 5.6 8.2e-21 73.3 0.8 2.2 2 0 0 2 2 2 2 Secreted repeat of unknown function Rbx_binding PF18113.1 AHV94669.1 - 0.012 15.3 0.5 0.083 12.7 0.2 2.0 1 1 1 2 2 2 0 Rubredoxin binding C-terminal domain DUF3305 PF11749.8 AHV94669.1 - 0.078 13.1 0.0 0.12 12.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3305) TerC PF03741.16 AHV94670.1 - 1e-47 162.2 17.4 1.4e-47 161.7 17.4 1.2 1 0 0 1 1 1 1 Integral membrane protein TerC family CorC_HlyC PF03471.17 AHV94670.1 - 2.8e-13 49.7 0.0 8.5e-13 48.1 0.0 1.8 1 0 0 1 1 1 1 Transporter associated domain CBS PF00571.28 AHV94670.1 - 2.2e-11 44.0 1.2 8.4e-07 29.3 0.2 2.5 2 0 0 2 2 2 2 CBS domain DUF808 PF05661.12 AHV94670.1 - 0.0016 17.5 1.4 0.0029 16.7 1.4 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF808) Cupin_2 PF07883.11 AHV94671.1 - 4.4e-18 64.8 0.0 6.5e-18 64.2 0.0 1.3 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 AHV94671.1 - 8.8e-08 32.1 0.0 1.3e-07 31.6 0.0 1.3 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.22 AHV94671.1 - 9.7e-07 28.5 0.0 1.3e-06 28.1 0.0 1.2 1 0 0 1 1 1 1 Cupin Cupin_3 PF05899.12 AHV94671.1 - 5.2e-06 26.0 0.0 8.3e-06 25.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) Pirin PF02678.16 AHV94671.1 - 0.015 15.2 0.0 0.019 14.9 0.0 1.2 1 0 0 1 1 1 0 Pirin PCO_ADO PF07847.12 AHV94671.1 - 0.022 14.2 0.2 0.063 12.7 0.0 1.6 1 1 1 2 2 2 0 PCO_ADO Cupin_6 PF12852.7 AHV94671.1 - 0.027 14.2 0.0 0.042 13.6 0.0 1.4 1 1 0 1 1 1 0 Cupin AraC_N PF06719.13 AHV94671.1 - 0.089 12.4 0.0 0.13 11.9 0.0 1.2 1 0 0 1 1 1 0 AraC-type transcriptional regulator N-terminus ARD PF03079.14 AHV94671.1 - 0.13 12.5 0.0 0.18 12.0 0.0 1.3 1 0 0 1 1 1 0 ARD/ARD' family GDPD PF03009.17 AHV94673.1 - 6.5e-28 98.2 0.0 8.6e-28 97.8 0.0 1.1 1 0 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family GDPD_2 PF13653.6 AHV94673.1 - 3.1e-05 24.3 0.4 8.7e-05 22.9 0.1 2.0 2 0 0 2 2 2 1 Glycerophosphoryl diester phosphodiesterase family TPR_16 PF13432.6 AHV94674.1 - 1.6e-24 86.3 76.8 3e-08 34.2 2.0 9.4 5 3 4 9 9 9 8 Tetratricopeptide repeat TPR_19 PF14559.6 AHV94674.1 - 2.7e-23 82.2 60.3 1.8e-08 34.8 1.0 8.7 5 3 3 9 9 9 7 Tetratricopeptide repeat TPR_14 PF13428.6 AHV94674.1 - 1.6e-20 72.1 76.7 0.00025 21.6 0.3 13.8 3 3 11 14 14 14 9 Tetratricopeptide repeat TPR_2 PF07719.17 AHV94674.1 - 9.5e-19 66.0 37.4 0.0037 17.3 0.7 10.7 10 1 1 11 11 11 6 Tetratricopeptide repeat TPR_12 PF13424.6 AHV94674.1 - 3e-13 49.8 37.1 1.6e-05 25.1 0.2 8.9 5 2 5 10 10 10 5 Tetratricopeptide repeat TPR_8 PF13181.6 AHV94674.1 - 6.8e-13 47.7 9.4 0.77 10.1 0.0 8.5 8 0 0 8 8 8 3 Tetratricopeptide repeat TPR_7 PF13176.6 AHV94674.1 - 1.8e-11 43.2 20.9 1.1 9.4 0.3 9.0 8 1 1 9 9 9 5 Tetratricopeptide repeat TPR_17 PF13431.6 AHV94674.1 - 5.6e-10 38.9 10.3 0.0046 17.2 0.1 7.8 10 0 0 10 10 9 2 Tetratricopeptide repeat TPR_11 PF13414.6 AHV94674.1 - 2.4e-09 36.7 10.2 0.066 12.9 0.3 6.8 7 0 0 7 7 7 3 TPR repeat ANAPC3 PF12895.7 AHV94674.1 - 1.4e-08 34.8 10.1 0.13 12.5 0.0 5.4 4 1 2 6 6 6 4 Anaphase-promoting complex, cyclosome, subunit 3 TPR_1 PF00515.28 AHV94674.1 - 2.1e-06 27.3 14.1 1 9.3 0.1 8.4 9 1 0 9 9 9 2 Tetratricopeptide repeat TPR_10 PF13374.6 AHV94674.1 - 0.00024 20.9 33.3 0.0018 18.0 1.7 8.7 9 1 1 10 10 8 2 Tetratricopeptide repeat TPR_9 PF13371.6 AHV94674.1 - 0.00063 19.8 0.5 0.00063 19.8 0.5 6.3 5 2 3 8 8 6 2 Tetratricopeptide repeat NARP1 PF12569.8 AHV94674.1 - 0.0012 17.9 0.5 0.0012 17.9 0.5 3.7 1 1 4 5 5 5 1 NMDA receptor-regulated protein 1 TPR_4 PF07721.14 AHV94674.1 - 0.027 15.1 1.8 0.027 15.1 1.8 12.2 15 2 0 15 15 12 0 Tetratricopeptide repeat TPR_21 PF09976.9 AHV94674.1 - 0.037 13.7 36.7 0.73 9.5 0.1 6.5 2 1 5 7 7 7 0 Tetratricopeptide repeat-like domain TPR_20 PF14561.6 AHV94674.1 - 0.21 11.9 0.2 0.21 11.9 0.2 7.0 3 1 5 8 8 8 0 Tetratricopeptide repeat TA_inhibitor PF17574.2 AHV94674.1 - 0.3 11.1 1.2 3.6 7.7 0.2 2.8 1 1 2 3 3 3 0 Inhibitor of toxin/antitoxin system (Gp4.5) Coatomer_E PF04733.14 AHV94674.1 - 0.73 9.2 8.5 0.75 9.1 0.0 3.2 1 1 2 3 3 3 0 Coatomer epsilon subunit TPR_6 PF13174.6 AHV94674.1 - 1.7 9.4 40.0 0.87 10.4 1.1 10.0 13 0 0 13 13 10 0 Tetratricopeptide repeat DUF2783 PF10932.8 AHV94676.1 - 4.4e-29 99.9 4.2 4.9e-29 99.8 4.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2783) VRR_NUC PF08774.11 AHV94677.1 - 5.4e-27 94.0 0.0 1e-26 93.1 0.0 1.5 1 0 0 1 1 1 1 VRR-NUC domain FANC_SAP PF18081.1 AHV94677.1 - 1.8e-07 31.2 0.1 1.8e-07 31.2 0.1 3.6 3 1 0 3 3 3 1 Fanconi anemia-associated nuclease SAP domain Gp49 PF05973.14 AHV94677.1 - 0.11 12.7 0.0 0.28 11.4 0.0 1.6 1 0 0 1 1 1 0 Phage derived protein Gp49-like (DUF891) Rubredoxin_2 PF18073.1 AHV94678.1 - 5.2e-11 42.1 8.7 8e-11 41.5 8.7 1.3 1 0 0 1 1 1 1 Rubredoxin metal binding domain TPR_2 PF07719.17 AHV94678.1 - 8e-08 31.8 0.7 0.19 11.9 0.0 4.9 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_7 PF13176.6 AHV94678.1 - 9.1e-06 25.4 1.8 0.0031 17.4 0.0 4.0 2 1 1 3 3 3 1 Tetratricopeptide repeat TPR_1 PF00515.28 AHV94678.1 - 1.8e-05 24.4 0.1 0.54 10.2 0.0 4.1 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_16 PF13432.6 AHV94678.1 - 0.0004 21.0 0.1 0.0004 21.0 0.1 4.4 5 0 0 5 5 4 2 Tetratricopeptide repeat RPN7 PF10602.9 AHV94678.1 - 0.0018 18.0 0.0 0.014 15.1 0.0 2.0 1 1 1 2 2 2 1 26S proteasome subunit RPN7 zf-RING_10 PF16685.5 AHV94678.1 - 0.021 14.9 0.3 0.041 14.0 0.3 1.4 1 0 0 1 1 1 0 zinc RING finger of MSL2 TPR_19 PF14559.6 AHV94678.1 - 0.028 14.9 12.3 0.29 11.6 0.0 4.1 3 1 0 4 4 4 0 Tetratricopeptide repeat TPR_12 PF13424.6 AHV94678.1 - 0.032 14.5 1.9 0.032 14.5 1.9 4.2 4 1 1 5 5 5 0 Tetratricopeptide repeat TPR_8 PF13181.6 AHV94678.1 - 0.049 13.9 0.1 69 4.0 0.0 3.7 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_11 PF13414.6 AHV94678.1 - 0.055 13.2 0.7 0.2 11.4 0.0 2.4 3 1 1 4 4 4 0 TPR repeat TPR_14 PF13428.6 AHV94678.1 - 0.094 13.6 27.5 0.33 11.9 0.4 7.3 3 2 5 8 8 8 0 Tetratricopeptide repeat TPR_6 PF13174.6 AHV94678.1 - 0.19 12.4 10.8 18 6.3 0.6 5.8 5 1 1 6 6 5 0 Tetratricopeptide repeat Terminase_GpA PF05876.12 AHV94678.1 - 4.5 5.7 5.0 2.1 6.8 2.4 1.7 2 0 0 2 2 2 0 Phage terminase large subunit (GpA) FCD PF07729.12 AHV94679.1 - 3.3e-29 101.8 2.5 6.1e-29 101.0 2.5 1.4 1 0 0 1 1 1 1 FCD domain GntR PF00392.21 AHV94679.1 - 9.9e-15 54.0 1.0 2.6e-14 52.6 0.1 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family MarR_2 PF12802.7 AHV94679.1 - 0.013 15.4 1.5 0.91 9.5 0.1 2.6 2 0 0 2 2 2 0 MarR family DUF3117 PF11314.8 AHV94679.1 - 0.069 13.0 0.3 0.38 10.6 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3117) PGK PF00162.19 AHV94680.1 - 3.3e-134 447.6 0.1 3.8e-134 447.4 0.1 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase BPD_transp_1 PF00528.22 AHV94681.1 - 1.8e-41 142.0 12.8 1.8e-41 142.0 12.8 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component LysR_substrate PF03466.20 AHV94682.1 - 1.9e-43 148.3 7.2 2.3e-43 148.0 7.2 1.1 1 0 0 1 1 1 1 LysR substrate binding domain CorA PF01544.18 AHV94683.1 - 2.1e-51 175.0 0.0 2.4e-51 174.8 0.0 1.0 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein DUF2946 PF11162.8 AHV94684.1 - 0.0043 17.7 5.9 0.0056 17.3 5.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2946) ShlB PF03865.13 AHV94685.1 - 1e-17 64.6 2.1 1.2e-17 64.3 2.1 1.1 1 0 0 1 1 1 1 Haemolysin secretion/activation protein ShlB/FhaC/HecB POTRA_2 PF08479.11 AHV94685.1 - 1.1e-17 63.6 0.2 5.8e-17 61.3 0.0 2.1 2 0 0 2 2 2 1 POTRA domain, ShlB-type ABC_tran PF00005.27 AHV94686.1 - 1.8e-14 54.4 0.0 2.1e-14 54.2 0.0 1.1 1 0 0 1 1 1 1 ABC transporter Mg_chelatase PF01078.21 AHV94686.1 - 0.0012 18.2 0.3 0.0014 18.0 0.3 1.1 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_29 PF13555.6 AHV94686.1 - 0.0049 16.6 0.0 0.011 15.5 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 AHV94686.1 - 0.005 17.2 0.3 0.0071 16.7 0.3 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 AHV94686.1 - 0.0094 16.2 0.1 0.013 15.8 0.1 1.4 1 1 0 1 1 1 1 AAA domain DUF87 PF01935.17 AHV94686.1 - 0.083 13.0 0.1 0.13 12.4 0.1 1.3 1 0 0 1 1 1 0 Helicase HerA, central domain AAA_7 PF12775.7 AHV94686.1 - 0.089 12.3 0.0 0.15 11.6 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region SCO1-SenC PF02630.14 AHV94687.1 - 1.2e-50 170.9 0.0 1.6e-50 170.5 0.0 1.1 1 0 0 1 1 1 1 SCO1/SenC AhpC-TSA PF00578.21 AHV94687.1 - 1.1e-08 35.0 0.0 1.6e-08 34.5 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 AHV94687.1 - 0.00024 20.8 0.0 0.00031 20.5 0.0 1.2 1 0 0 1 1 1 1 Redoxin Thioredoxin_8 PF13905.6 AHV94687.1 - 0.005 17.1 0.0 0.0072 16.6 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like TAT_signal PF10518.9 AHV94687.1 - 0.0074 16.1 1.8 0.0074 16.1 1.8 1.9 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence DUF4139 PF13598.6 AHV94687.1 - 0.18 11.5 0.0 0.22 11.2 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4139) RHS PF03527.14 AHV94687.1 - 0.2 11.5 0.0 0.56 10.0 0.0 1.7 1 0 0 1 1 1 0 RHS protein Ala_racemase_N PF01168.20 AHV94688.1 - 1.1e-07 31.7 0.0 1.2e-07 31.6 0.0 1.0 1 0 0 1 1 1 1 Alanine racemase, N-terminal domain Aminotran_3 PF00202.21 AHV94689.1 - 2.6e-82 276.7 0.0 3e-82 276.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 AHV94689.1 - 0.00038 19.7 0.0 0.0007 18.9 0.0 1.4 2 0 0 2 2 2 1 Aminotransferase class I and II rve PF00665.26 AHV94690.1 - 7.9e-14 51.9 0.0 3.1e-12 46.7 0.0 2.1 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 AHV94690.1 - 9.1e-12 44.9 8.6 1.8e-11 44.0 8.6 1.5 1 0 0 1 1 1 1 HTH-like domain Rhomboid_SP PF12595.8 AHV94690.1 - 0.0029 17.0 0.4 0.96 8.8 0.0 2.2 1 1 1 2 2 2 2 Rhomboid serine protease MacB_PCD PF12704.7 AHV94691.1 - 1.6e-19 71.0 1.1 1.6e-19 71.0 1.1 2.2 3 0 0 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.21 AHV94691.1 - 9.4e-14 51.7 2.0 9.4e-14 51.7 2.0 3.2 3 0 0 3 3 3 1 FtsX-like permease family DUF1987 PF09345.10 AHV94692.1 - 7.9e-34 115.9 0.0 8.4e-34 115.8 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1987) YozE_SAM_like PF06855.12 AHV94692.1 - 0.097 12.9 0.1 0.63 10.3 0.0 2.0 2 0 0 2 2 2 0 YozE SAM-like fold Ammonium_transp PF00909.21 AHV94693.1 - 1.1e-119 399.8 40.2 1.2e-119 399.6 40.2 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family BPD_transp_2 PF02653.16 AHV94694.1 - 5e-22 78.3 53.4 1.5e-20 73.5 53.4 2.0 1 1 0 1 1 1 1 Branched-chain amino acid transport system / permease component COXG PF06240.13 AHV94695.1 - 2.8e-30 104.9 0.0 3.5e-30 104.6 0.0 1.1 1 0 0 1 1 1 1 Carbon monoxide dehydrogenase subunit G (CoxG) Polyketide_cyc2 PF10604.9 AHV94695.1 - 1.4e-05 25.4 0.0 1.9e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport DUF2505 PF10698.9 AHV94695.1 - 0.078 13.1 0.1 10 6.2 0.0 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2505) Polyketide_cyc PF03364.20 AHV94695.1 - 0.11 12.7 0.0 0.27 11.4 0.0 1.7 1 1 0 1 1 1 0 Polyketide cyclase / dehydrase and lipid transport DoxX PF07681.12 AHV94696.1 - 1.2e-17 64.2 13.6 1.2e-17 64.2 13.6 1.6 2 0 0 2 2 2 1 DoxX DoxX_2 PF13564.6 AHV94696.1 - 1.3e-05 25.2 12.3 2.1e-05 24.5 12.3 1.4 1 1 0 1 1 1 1 DoxX-like family DoxD PF04173.13 AHV94696.1 - 0.018 14.9 5.4 0.17 11.7 1.4 2.1 1 1 0 2 2 2 0 TQO small subunit DoxD FA_desaturase PF00487.24 AHV94696.1 - 0.72 9.6 7.6 0.94 9.3 7.6 1.2 1 0 0 1 1 1 0 Fatty acid desaturase LysR_substrate PF03466.20 AHV94697.1 - 6.6e-35 120.4 7.9 8.7e-35 120.0 7.9 1.2 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 AHV94697.1 - 3.9e-18 65.1 2.3 3.9e-18 65.1 2.3 2.0 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family MarR_2 PF12802.7 AHV94697.1 - 0.027 14.4 3.6 0.039 13.8 0.5 2.9 3 0 0 3 3 3 0 MarR family HTH_30 PF13556.6 AHV94697.1 - 0.056 13.3 0.1 0.14 12.0 0.1 1.7 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_39 PF14090.6 AHV94697.1 - 0.085 12.6 0.1 0.32 10.8 0.1 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_IclR PF09339.10 AHV94697.1 - 1.1 9.1 5.9 1.6 8.6 0.5 3.5 4 0 0 4 4 4 0 IclR helix-turn-helix domain Ribosomal_S10 PF00338.22 AHV94698.1 - 5.6e-36 122.7 0.0 6.3e-36 122.5 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e DUF3649 PF12365.8 AHV94699.1 - 8.4e-14 50.9 6.9 8.4e-14 50.9 6.9 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF3649) rve PF00665.26 AHV94700.1 - 8.7e-36 122.7 0.1 1.3e-35 122.1 0.1 1.2 1 0 0 1 1 1 1 Integrase core domain rve_2 PF13333.6 AHV94700.1 - 1.8e-12 47.3 0.9 2.7e-12 46.6 0.9 1.3 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.6 AHV94700.1 - 1.2e-11 44.1 0.2 2.5e-11 43.2 0.2 1.5 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AHV94700.1 - 6.5e-08 32.9 0.2 8e-08 32.6 0.2 1.1 1 0 0 1 1 1 1 DDE domain DDE_3 PF13358.6 AHV94700.1 - 0.12 12.2 0.1 0.25 11.1 0.1 1.5 1 1 0 1 1 1 0 DDE superfamily endonuclease Ferric_reduct PF01794.19 AHV94701.1 - 1.2e-13 51.3 10.9 1.2e-13 51.3 10.9 1.7 2 0 0 2 2 2 1 Ferric reductase like transmembrane component Virul_fac_BrkB PF03631.15 AHV94702.1 - 9.5e-54 182.7 27.4 1.1e-53 182.5 27.4 1.0 1 0 0 1 1 1 1 Virulence factor BrkB PseudoU_synth_2 PF00849.22 AHV94703.1 - 1.9e-12 47.6 0.0 2.6e-10 40.6 0.0 2.2 1 1 0 1 1 1 1 RNA pseudouridylate synthase S4 PF01479.25 AHV94703.1 - 7.4e-07 28.8 1.1 1.2e-05 24.9 0.1 3.2 4 0 0 4 4 4 1 S4 domain S4_2 PF13275.6 AHV94703.1 - 0.0073 16.1 0.1 0.15 11.9 0.0 2.5 2 1 0 2 2 2 1 S4 domain Amido_AtzD_TrzD PF09663.10 AHV94703.1 - 0.084 11.9 0.0 0.11 11.5 0.0 1.1 1 0 0 1 1 1 0 Amidohydrolase ring-opening protein (Amido_AtzD_TrzD) ATP-synt_B PF00430.18 AHV94704.1 - 1.4e-27 96.3 13.3 2e-27 95.9 13.3 1.2 1 0 0 1 1 1 1 ATP synthase B/B' CF(0) TRAM1 PF08390.11 AHV94704.1 - 0.042 13.5 0.3 0.063 12.9 0.3 1.3 1 0 0 1 1 1 0 TRAM1-like protein adh_short PF00106.25 AHV94705.1 - 1.9e-53 180.9 0.1 2.4e-53 180.5 0.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 AHV94705.1 - 3.7e-53 180.5 0.2 4.7e-53 180.1 0.2 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 AHV94705.1 - 4.3e-23 82.1 0.8 6e-23 81.7 0.8 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 AHV94705.1 - 1.1e-06 28.3 0.3 2.9e-06 26.9 0.3 1.9 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Glyco_transf_4 PF13439.6 AHV94705.1 - 6.2e-05 23.1 0.7 0.12 12.3 0.4 3.0 3 0 0 3 3 3 2 Glycosyltransferase Family 4 Glyco_transf_5 PF08323.11 AHV94705.1 - 0.00025 20.8 0.8 0.45 10.2 0.2 2.9 2 1 1 3 3 3 1 Starch synthase catalytic domain Glyco_trans_4_4 PF13579.6 AHV94705.1 - 0.0008 19.9 6.6 0.0071 16.8 4.6 2.7 2 1 1 3 3 3 2 Glycosyl transferase 4-like domain GDP_Man_Dehyd PF16363.5 AHV94705.1 - 0.0011 18.4 0.0 0.0022 17.4 0.0 1.5 2 0 0 2 2 2 1 GDP-mannose 4,6 dehydratase NmrA PF05368.13 AHV94705.1 - 0.004 16.7 0.2 0.0065 16.1 0.2 1.3 1 0 0 1 1 1 1 NmrA-like family Sacchrp_dh_NADP PF03435.18 AHV94705.1 - 0.0084 16.4 0.1 0.014 15.7 0.1 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain ApbA PF02558.16 AHV94705.1 - 0.012 15.2 0.2 0.023 14.3 0.2 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Replic_Relax PF13814.6 AHV94705.1 - 0.015 15.4 0.2 0.024 14.7 0.2 1.4 1 1 0 1 1 1 0 Replication-relaxation RmlD_sub_bind PF04321.17 AHV94705.1 - 0.026 13.6 0.1 0.038 13.1 0.1 1.2 1 0 0 1 1 1 0 RmlD substrate binding domain F420_oxidored PF03807.17 AHV94705.1 - 0.026 15.1 0.3 0.12 13.0 0.2 2.2 1 1 1 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent XdhC_C PF13478.6 AHV94705.1 - 0.084 13.4 0.2 0.14 12.6 0.2 1.4 1 0 0 1 1 1 0 XdhC Rossmann domain NAD_binding_3 PF03447.16 AHV94705.1 - 0.12 13.1 0.5 0.49 11.1 0.4 2.1 2 1 0 2 2 2 0 Homoserine dehydrogenase, NAD binding domain PALP PF00291.25 AHV94705.1 - 0.12 11.7 1.4 0.19 11.1 1.4 1.3 1 0 0 1 1 1 0 Pyridoxal-phosphate dependent enzyme Glyoxalase PF00903.25 AHV94706.1 - 9.3e-13 48.5 0.1 1.2e-12 48.1 0.1 1.2 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 AHV94706.1 - 3.8e-07 30.8 0.3 8.4e-07 29.8 0.1 1.6 2 0 0 2 2 2 1 Glyoxalase-like domain Glyoxalase_3 PF13468.6 AHV94706.1 - 0.0096 16.0 0.1 0.058 13.5 0.0 2.1 1 1 0 2 2 2 1 Glyoxalase-like domain Glyoxalase_4 PF13669.6 AHV94706.1 - 0.024 14.9 0.0 0.048 13.9 0.0 1.6 1 1 0 1 1 1 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Sushi_2 PF09014.10 AHV94706.1 - 0.15 12.0 0.0 0.27 11.2 0.0 1.3 1 0 0 1 1 1 0 Beta-2-glycoprotein-1 fifth domain rve_3 PF13683.6 AHV94707.1 - 4e-26 90.6 0.1 4.7e-26 90.3 0.1 1.1 1 0 0 1 1 1 1 Integrase core domain rve_2 PF13333.6 AHV94707.1 - 5.8e-08 32.8 0.0 7.4e-08 32.5 0.0 1.1 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AHV94707.1 - 0.003 17.8 0.0 0.0035 17.6 0.0 1.1 1 0 0 1 1 1 1 DDE domain AA_synth PF06684.11 AHV94708.1 - 1.5e-64 216.7 0.1 1.8e-64 216.5 0.1 1.0 1 0 0 1 1 1 1 Amino acid synthesis CMD PF02627.20 AHV94709.1 - 3.3e-07 30.2 0.4 1.2e-06 28.5 0.4 2.0 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family DUF1949 PF09186.11 AHV94710.1 - 8.9e-09 35.1 0.0 1.2e-08 34.7 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1949) UPF0029 PF01205.19 AHV94710.1 - 1.6e-07 31.6 0.7 3e-07 30.7 0.7 1.5 1 0 0 1 1 1 1 Uncharacterized protein family UPF0029 Peptidase_M48 PF01435.18 AHV94711.1 - 2.1e-38 132.1 0.2 2.9e-38 131.6 0.2 1.2 1 0 0 1 1 1 1 Peptidase family M48 LptF_LptG PF03739.14 AHV94712.1 - 1.7e-59 201.4 5.9 2.1e-59 201.2 5.9 1.0 1 0 0 1 1 1 1 Lipopolysaccharide export system permease LptF/LptG DUF4140 PF13600.6 AHV94712.1 - 0.056 13.9 0.1 0.11 12.9 0.1 1.4 1 0 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) Zn_peptidase PF04228.13 AHV94713.1 - 1.1e-118 395.9 0.1 1.3e-118 395.7 0.1 1.0 1 0 0 1 1 1 1 Putative neutral zinc metallopeptidase Aspzincin_M35 PF14521.6 AHV94713.1 - 0.072 13.6 0.0 0.13 12.8 0.0 1.4 1 0 0 1 1 1 0 Lysine-specific metallo-endopeptidase Reprolysin_3 PF13582.6 AHV94713.1 - 0.13 12.7 0.0 0.24 11.9 0.0 1.4 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Peptidase_M48 PF01435.18 AHV94713.1 - 4.2 7.1 4.7 17 5.1 2.1 2.2 1 1 1 2 2 2 0 Peptidase family M48 OKR_DC_1_C PF03711.15 AHV94714.1 - 4e-46 156.6 0.0 5.4e-46 156.2 0.0 1.1 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, C-terminal domain OKR_DC_1 PF01276.20 AHV94714.1 - 0.0004 19.2 0.0 0.00053 18.8 0.0 1.2 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, major domain Mur_ligase_M PF08245.12 AHV94715.1 - 1.6e-20 73.9 0.0 2.2e-20 73.5 0.0 1.2 1 0 0 1 1 1 1 Mur ligase middle domain Mur_ligase PF01225.25 AHV94715.1 - 2e-15 56.9 0.1 6e-15 55.4 0.0 1.8 2 0 0 2 2 2 1 Mur ligase family, catalytic domain Mur_ligase_C PF02875.21 AHV94715.1 - 2.5e-10 40.5 0.0 1e-09 38.5 0.0 2.1 2 0 0 2 2 2 1 Mur ligase family, glutamate ligase domain Peptidase_S49_N PF08496.10 AHV94715.1 - 0.11 12.6 0.0 0.21 11.6 0.0 1.3 1 0 0 1 1 1 0 Peptidase family S49 N-terminal LysR_substrate PF03466.20 AHV94716.1 - 5.6e-08 32.4 0.3 6.1e-08 32.3 0.3 1.0 1 0 0 1 1 1 1 LysR substrate binding domain rve_3 PF13683.6 AHV94717.1 - 1.8e-14 53.3 0.5 2e-14 53.1 0.5 1.0 1 0 0 1 1 1 1 Integrase core domain rve PF00665.26 AHV94717.1 - 1.1e-05 25.6 0.0 2e-05 24.8 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AHV94717.1 - 0.0094 16.2 0.0 0.01 16.1 0.0 1.0 1 0 0 1 1 1 1 DDE domain TctC PF03401.14 AHV94718.1 - 4.4e-76 255.5 0.1 5.1e-76 255.3 0.1 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor MoCF_biosynth PF00994.24 AHV94719.1 - 0.11 12.2 0.0 0.11 12.2 0.0 1.1 1 0 0 1 1 1 0 Probable molybdopterin binding domain RNA_pol_Rpb6 PF01192.22 AHV94720.1 - 2.7e-13 49.6 0.0 3.2e-13 49.4 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb6 Ank_4 PF13637.6 AHV94722.1 - 0.0007 20.1 0.0 0.00079 19.9 0.0 1.2 1 0 0 1 1 1 1 Ankyrin repeats (many copies) Ank_5 PF13857.6 AHV94722.1 - 0.0055 17.0 0.0 0.0068 16.7 0.0 1.2 1 0 0 1 1 1 1 Ankyrin repeats (many copies) Ank_2 PF12796.7 AHV94722.1 - 0.01 16.4 0.0 0.011 16.4 0.0 1.1 1 0 0 1 1 1 0 Ankyrin repeats (3 copies) Ank PF00023.30 AHV94722.1 - 0.064 13.7 0.0 6.6 7.4 0.0 2.1 2 0 0 2 2 2 0 Ankyrin repeat SHMT PF00464.19 AHV94723.1 - 2.2e-170 566.6 0.8 2.7e-170 566.3 0.8 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.21 AHV94723.1 - 1.4e-09 37.6 0.0 2.9e-09 36.6 0.0 1.3 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 AHV94723.1 - 5.5e-08 32.4 0.2 1.1e-07 31.5 0.2 1.4 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 AHV94723.1 - 3e-05 23.1 0.1 4.7e-05 22.5 0.1 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 AHV94723.1 - 0.0029 16.2 0.0 0.0038 15.8 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme OKR_DC_1 PF01276.20 AHV94723.1 - 0.045 12.5 0.0 0.39 9.4 0.0 2.1 2 0 0 2 2 2 0 Orn/Lys/Arg decarboxylase, major domain CN_hydrolase PF00795.22 AHV94724.1 - 2.3e-22 79.6 0.0 3.5e-22 79.0 0.0 1.2 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase TruB_C PF09142.11 AHV94724.1 - 0.0012 18.6 2.0 0.1 12.4 0.3 2.8 2 0 0 2 2 2 2 tRNA Pseudouridine synthase II, C terminal COX8 PF02285.15 AHV94724.1 - 3.2 7.7 9.3 0.61 10.0 0.7 2.8 2 0 0 2 2 2 0 Cytochrome oxidase c subunit VIII SurE PF01975.17 AHV94725.1 - 7.5e-60 202.0 0.0 9.1e-60 201.8 0.0 1.1 1 0 0 1 1 1 1 Survival protein SurE DUF1974 PF09317.11 AHV94726.1 - 1.3e-107 359.6 0.2 1.7e-107 359.2 0.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1974) Acyl-CoA_dh_N PF02771.16 AHV94726.1 - 2.8e-21 76.3 0.0 8e-21 74.8 0.0 1.8 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_1 PF00441.24 AHV94726.1 - 6.6e-14 52.4 0.4 6.6e-14 52.4 0.4 1.8 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 AHV94726.1 - 9.3e-08 32.2 0.0 1.9e-07 31.2 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 AHV94726.1 - 0.066 13.5 0.1 0.066 13.5 0.1 2.7 3 0 0 3 3 3 0 Acyl-CoA dehydrogenase, C-terminal domain UPF0020 PF01170.18 AHV94727.1 - 1.4e-47 162.0 0.0 1.9e-47 161.5 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 THUMP PF02926.17 AHV94727.1 - 4.2e-08 33.4 0.0 6.5e-08 32.8 0.0 1.2 1 0 0 1 1 1 1 THUMP domain Methyltransf_31 PF13847.6 AHV94727.1 - 3.5e-05 23.6 0.0 0.0023 17.8 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.14 AHV94727.1 - 0.00016 21.2 0.0 0.00037 20.1 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_25 PF13649.6 AHV94727.1 - 0.0045 17.7 0.0 0.036 14.8 0.0 2.5 3 0 0 3 3 3 1 Methyltransferase domain N6_N4_Mtase PF01555.18 AHV94727.1 - 0.19 11.4 0.0 0.81 9.3 0.0 1.9 2 0 0 2 2 2 0 DNA methylase DnaB_C PF03796.15 AHV94728.1 - 9.3e-114 379.0 0.0 1.2e-113 378.6 0.0 1.2 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain DnaB PF00772.21 AHV94728.1 - 1.2e-26 92.8 0.0 2.7e-26 91.6 0.0 1.7 2 0 0 2 2 2 1 DnaB-like helicase N terminal domain AAA_25 PF13481.6 AHV94728.1 - 3.1e-13 49.7 0.0 5.2e-13 49.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain ATPase PF06745.13 AHV94728.1 - 8.5e-07 28.6 0.0 2.4e-06 27.1 0.0 1.7 1 1 0 1 1 1 1 KaiC IstB_IS21 PF01695.17 AHV94728.1 - 0.1 12.3 0.1 2.4 7.9 0.0 2.5 1 1 0 2 2 2 0 IstB-like ATP binding protein KTI12 PF08433.10 AHV94728.1 - 0.2 11.1 0.0 0.94 8.9 0.0 1.9 2 0 0 2 2 2 0 Chromatin associated protein KTI12 GntP_permease PF02447.16 AHV94729.1 - 2.9e-84 283.3 13.4 3.2e-84 283.2 13.4 1.0 1 0 0 1 1 1 1 GntP family permease CitMHS PF03600.16 AHV94729.1 - 4.5e-08 32.6 14.9 7e-08 32.0 14.9 1.3 1 0 0 1 1 1 1 Citrate transporter DUF3007 PF11460.8 AHV94729.1 - 0.016 15.4 0.5 0.016 15.4 0.5 2.4 3 0 0 3 3 3 0 Protein of unknown function (DUF3007) FIST PF08495.10 AHV94729.1 - 0.75 9.8 3.2 1.2 9.1 1.1 2.0 1 1 1 2 2 2 0 FIST N domain SecE PF00584.20 AHV94731.1 - 7.4e-22 77.0 1.3 7.4e-22 77.0 1.3 2.0 2 0 0 2 2 2 1 SecE/Sec61-gamma subunits of protein translocation complex Prok-E2_D PF14460.6 AHV94731.1 - 0.018 14.7 0.1 0.021 14.5 0.1 1.1 1 0 0 1 1 1 0 Prokaryotic E2 family D Toprim_4 PF13662.6 AHV94732.1 - 2.5e-19 69.5 0.0 4.6e-19 68.7 0.0 1.4 1 0 0 1 1 1 1 Toprim domain RecR PF02132.15 AHV94732.1 - 4.9e-14 51.6 1.6 4.9e-14 51.6 1.6 1.8 2 0 0 2 2 2 1 RecR protein Toprim PF01751.22 AHV94732.1 - 6.5e-05 23.1 0.0 0.00013 22.1 0.0 1.5 1 0 0 1 1 1 1 Toprim domain HHH_5 PF14520.6 AHV94732.1 - 0.15 12.7 0.0 1.1 9.9 0.0 2.2 2 0 0 2 2 2 0 Helix-hairpin-helix domain SBP_bac_3 PF00497.20 AHV94733.1 - 3.4e-64 216.4 0.8 3.9e-64 216.2 0.8 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Phosphonate-bd PF12974.7 AHV94733.1 - 1.4e-07 31.4 0.2 1.1e-06 28.5 0.2 2.1 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein Lig_chan-Glu_bd PF10613.9 AHV94733.1 - 2e-07 31.2 0.0 3.6e-07 30.4 0.0 1.4 1 0 0 1 1 1 1 Ligated ion channel L-glutamate- and glycine-binding site YhfZ_C PF14503.6 AHV94733.1 - 0.018 14.6 0.0 0.97 8.9 0.0 2.2 2 0 0 2 2 2 0 YhfZ C-terminal domain NMT1 PF09084.11 AHV94733.1 - 0.027 14.4 0.0 0.047 13.6 0.0 1.4 1 0 0 1 1 1 0 NMT1/THI5 like PMSR PF01625.21 AHV94735.1 - 2.1e-49 167.6 0.0 2.4e-49 167.4 0.0 1.0 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase rve PF00665.26 AHV94736.1 - 7e-21 74.6 0.3 2.3e-20 73.0 0.0 1.7 2 0 0 2 2 2 1 Integrase core domain rve_3 PF13683.6 AHV94736.1 - 9.8e-20 70.1 2.7 1.4e-19 69.6 2.7 1.2 1 0 0 1 1 1 1 Integrase core domain PG_binding_2 PF08823.11 AHV94736.1 - 0.019 15.3 0.0 0.027 14.8 0.0 1.3 1 0 0 1 1 1 0 Putative peptidoglycan binding domain DDE_Tnp_1_2 PF13586.6 AHV94736.1 - 0.093 13.1 0.4 0.22 11.9 0.1 1.8 1 1 1 2 2 2 0 Transposase DDE domain Hydrolase_4 PF12146.8 AHV94737.1 - 1e-06 28.2 0.1 1.5e-06 27.7 0.1 1.3 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Thioesterase PF00975.20 AHV94737.1 - 4.6e-05 23.7 0.1 7.2e-05 23.0 0.1 1.4 1 1 0 1 1 1 1 Thioesterase domain Abhydrolase_1 PF00561.20 AHV94737.1 - 0.0029 17.3 0.0 0.0032 17.2 0.0 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_8 PF06259.12 AHV94737.1 - 0.0087 15.7 0.1 0.013 15.2 0.1 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase Peptidase_S15 PF02129.18 AHV94737.1 - 0.02 14.5 0.0 0.025 14.2 0.0 1.1 1 0 0 1 1 1 0 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_6 PF12697.7 AHV94737.1 - 0.14 12.7 18.2 0.076 13.6 11.3 2.4 1 1 2 3 3 3 0 Alpha/beta hydrolase family Sdh5 PF03937.16 AHV94738.1 - 6e-19 67.8 2.5 6.7e-19 67.6 2.5 1.1 1 0 0 1 1 1 1 Flavinator of succinate dehydrogenase Aminotran_3 PF00202.21 AHV94739.1 - 2.8e-92 309.5 0.0 3.4e-92 309.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 AHV94739.1 - 0.0032 16.7 0.0 0.006 15.8 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 AHV94739.1 - 0.02 14.2 0.0 0.032 13.5 0.0 1.2 1 0 0 1 1 1 0 Beta-eliminating lyase 2CSK_N PF08521.10 AHV94740.1 - 1.6e-33 115.7 0.1 3.5e-33 114.6 0.1 1.6 1 0 0 1 1 1 1 Two-component sensor kinase N-terminal HATPase_c PF02518.26 AHV94740.1 - 2.6e-18 66.6 0.0 4.2e-18 65.9 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 AHV94740.1 - 3.4e-10 39.8 3.1 8.5e-10 38.5 2.1 2.2 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.6 AHV94740.1 - 0.00034 20.6 0.0 0.00092 19.2 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain Glyco_trans_1_4 PF13692.6 AHV94741.1 - 2.3e-15 57.2 0.1 4e-15 56.4 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 AHV94741.1 - 3.1e-15 57.0 7.2 3.1e-15 57.0 7.2 2.4 3 0 0 3 3 3 1 Glycosyl transferase 4-like domain Glycos_transf_1 PF00534.20 AHV94741.1 - 4.2e-13 49.2 0.0 5.9e-13 48.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 AHV94741.1 - 2e-12 47.5 2.9 2e-12 47.5 2.9 1.7 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 AHV94741.1 - 1e-06 29.0 0.0 2e-06 28.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 AHV94741.1 - 0.22 11.5 0.1 0.99 9.4 0.1 2.0 1 1 0 1 1 1 0 Glycosyl transferase 4-like Pribosyltran_N PF13793.6 AHV94742.1 - 4.1e-47 158.9 0.2 1.7e-46 156.9 0.1 1.9 2 0 0 2 2 2 1 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyl_synth PF14572.6 AHV94742.1 - 1.3e-29 103.5 0.4 2.1e-28 99.6 0.1 2.2 1 1 1 2 2 2 1 Phosphoribosyl synthetase-associated domain Pribosyltran PF00156.27 AHV94742.1 - 2.4e-19 69.4 1.3 5.3e-19 68.3 0.4 1.9 2 0 0 2 2 2 1 Phosphoribosyl transferase domain UPRTase PF14681.6 AHV94742.1 - 0.004 16.6 0.1 0.0079 15.7 0.0 1.5 2 0 0 2 2 2 1 Uracil phosphoribosyltransferase DUF1428 PF07237.11 AHV94744.1 - 6.7e-29 100.1 0.1 7.8e-29 99.9 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1428) HTH_1 PF00126.27 AHV94745.1 - 3.1e-18 65.4 0.1 5.7e-18 64.6 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family LysR_substrate PF03466.20 AHV94745.1 - 7.4e-17 61.4 0.4 1.2e-16 60.8 0.4 1.3 1 0 0 1 1 1 1 LysR substrate binding domain HTH_28 PF13518.6 AHV94745.1 - 0.0022 18.1 0.0 0.0045 17.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 AHV94745.1 - 0.0049 16.7 0.0 0.013 15.4 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_30 PF13556.6 AHV94745.1 - 0.0074 16.1 0.0 0.015 15.1 0.0 1.5 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain MarR_2 PF12802.7 AHV94745.1 - 0.025 14.5 0.1 0.059 13.3 0.1 1.6 1 0 0 1 1 1 0 MarR family HTH_20 PF12840.7 AHV94745.1 - 0.031 14.3 0.0 0.063 13.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Trans_reg_C PF00486.28 AHV94746.1 - 1.6e-10 40.9 0.0 2.2e-10 40.5 0.0 1.1 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal EAL PF00563.20 AHV94747.1 - 2.9e-63 213.6 0.0 4e-63 213.1 0.0 1.2 1 0 0 1 1 1 1 EAL domain CSS-motif PF12792.7 AHV94747.1 - 3.3e-24 85.5 0.9 5.4e-24 84.8 0.9 1.3 1 0 0 1 1 1 1 CSS motif domain associated with EAL MerC PF03203.14 AHV94747.1 - 0.56 10.7 3.0 0.83 10.1 0.6 2.2 2 0 0 2 2 2 0 MerC mercury resistance protein LysR_substrate PF03466.20 AHV94748.1 - 2.8e-21 75.9 0.1 4.4e-21 75.2 0.1 1.3 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 AHV94748.1 - 1.9e-15 56.5 0.7 3.6e-15 55.7 0.7 1.5 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_30 PF13556.6 AHV94748.1 - 0.0037 17.0 0.2 0.0081 15.9 0.2 1.5 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain HTH_50 PF18024.1 AHV94748.1 - 0.0078 15.8 0.3 0.016 14.8 0.3 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 AHV94748.1 - 0.0093 15.8 0.3 0.021 14.7 0.3 1.6 1 0 0 1 1 1 1 MarR family HTH_8 PF02954.19 AHV94748.1 - 0.022 14.5 0.3 0.04 13.7 0.3 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_AsnC-type PF13404.6 AHV94748.1 - 0.048 13.5 2.8 0.061 13.2 1.8 1.7 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_28 PF13518.6 AHV94748.1 - 0.082 13.1 0.5 0.2 11.8 0.1 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain CSD PF00313.22 AHV94748.1 - 0.099 12.5 0.0 0.16 11.8 0.0 1.3 1 0 0 1 1 1 0 'Cold-shock' DNA-binding domain HTH_23 PF13384.6 AHV94748.1 - 0.11 12.3 0.1 0.2 11.5 0.1 1.4 1 0 0 1 1 1 0 Homeodomain-like domain DctP PF03480.13 AHV94749.1 - 3.2e-15 56.2 0.0 5.1e-15 55.6 0.0 1.3 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein, family 7 SecA_DEAD PF07517.14 AHV94750.1 - 6.6e-131 435.9 0.0 1.1e-130 435.2 0.0 1.3 1 0 0 1 1 1 1 SecA DEAD-like domain SecA_SW PF07516.13 AHV94750.1 - 5.2e-67 225.8 0.8 1.5e-66 224.2 0.3 2.1 2 0 0 2 2 2 1 SecA Wing and Scaffold domain SecA_PP_bind PF01043.20 AHV94750.1 - 4e-35 120.8 0.0 1e-34 119.5 0.0 1.7 1 0 0 1 1 1 1 SecA preprotein cross-linking domain SEC-C PF02810.15 AHV94750.1 - 9.9e-11 41.4 10.2 1.9e-10 40.5 10.2 1.5 1 0 0 1 1 1 1 SEC-C motif DEAD PF00270.29 AHV94750.1 - 0.0031 17.3 0.0 0.01 15.6 0.0 1.8 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 AHV94750.1 - 0.029 14.7 1.2 0.23 11.8 0.0 2.5 2 0 0 2 2 2 0 Helicase conserved C-terminal domain Oxidored_q4 PF00507.19 AHV94752.1 - 1.8e-39 133.9 1.5 1.8e-39 133.9 1.5 1.4 1 1 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 DUF3556 PF12077.8 AHV94752.1 - 0.014 13.8 0.1 0.016 13.7 0.1 1.2 1 0 0 1 1 1 0 Transmembrane protein of unknown function (DUF3556) DUF4148 PF13663.6 AHV94753.1 - 1.3e-21 76.5 2.5 1.1e-12 47.9 0.1 2.0 2 0 0 2 2 2 2 Domain of unknown function (DUF4148) BPD_transp_2 PF02653.16 AHV94754.1 - 4.7e-53 180.1 27.1 5.9e-53 179.7 27.1 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component HTH_1 PF00126.27 AHV94755.1 - 2.7e-20 72.0 0.3 4.5e-20 71.4 0.1 1.5 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family LysR_substrate PF03466.20 AHV94755.1 - 2e-05 24.1 0.0 3.2e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 LysR substrate binding domain MarR PF01047.22 AHV94755.1 - 0.0012 18.7 0.0 0.0021 18.0 0.0 1.4 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.19 AHV94755.1 - 0.0013 18.8 0.0 0.002 18.3 0.0 1.2 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_IclR PF09339.10 AHV94755.1 - 0.0039 17.0 0.1 0.15 11.9 0.0 2.2 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.6 AHV94755.1 - 0.0082 15.7 0.0 0.014 15.0 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 AHV94755.1 - 0.02 14.8 0.0 0.033 14.1 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_Tnp_ISL3 PF13542.6 AHV94755.1 - 0.077 12.4 0.1 0.12 11.8 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 TctC PF03401.14 AHV94756.1 - 6.7e-88 294.3 0.3 7.5e-88 294.1 0.3 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor adh_short PF00106.25 AHV94757.1 - 7.4e-27 94.1 0.0 8.8e-27 93.8 0.0 1.0 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 AHV94757.1 - 1.8e-22 80.1 0.0 2.2e-22 79.8 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 AHV94757.1 - 0.014 15.3 0.4 0.033 14.1 0.4 1.5 1 1 0 1 1 1 0 KR domain DAO PF01266.24 AHV94757.1 - 0.051 13.2 0.5 0.073 12.6 0.5 1.4 1 1 0 1 1 1 0 FAD dependent oxidoreductase LytR_C PF13399.6 AHV94757.1 - 0.15 13.1 0.4 0.35 11.9 0.4 1.7 1 1 0 1 1 1 0 LytR cell envelope-related transcriptional attenuator DUF533 PF04391.12 AHV94758.1 - 4.6e-15 55.7 0.3 7.6e-15 54.9 0.3 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF533) Rieske PF00355.26 AHV94759.1 - 1e-13 51.0 0.0 2.9e-13 49.6 0.0 1.7 2 0 0 2 2 2 1 Rieske [2Fe-2S] domain Ring_hydroxyl_A PF00848.19 AHV94759.1 - 2.8e-12 47.1 0.0 5.4e-12 46.1 0.0 1.4 1 1 0 1 1 1 1 Ring hydroxylating alpha subunit (catalytic domain) P53_tetramer PF07710.11 AHV94759.1 - 0.095 12.0 0.0 0.19 11.1 0.0 1.5 1 0 0 1 1 1 0 P53 tetramerisation motif rve PF00665.26 AHV94760.1 - 2.7e-32 111.4 0.7 4.3e-32 110.8 0.1 1.6 2 0 0 2 2 1 1 Integrase core domain LZ_Tnp_IS481 PF13011.6 AHV94760.1 - 7.8e-22 77.6 2.7 1.1e-19 70.7 0.4 2.6 1 1 1 2 2 2 1 leucine-zipper of insertion element IS481 rve_3 PF13683.6 AHV94760.1 - 1.9e-18 66.0 3.1 4.4e-18 64.8 3.1 1.7 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.6 AHV94760.1 - 6.1e-17 60.9 4.4 1.2e-07 31.3 0.1 2.7 2 0 0 2 2 2 2 Homeodomain-like domain HTH_28 PF13518.6 AHV94760.1 - 1.4e-15 57.1 6.5 5.9e-11 42.3 0.1 3.4 4 0 0 4 4 3 2 Helix-turn-helix domain HTH_29 PF13551.6 AHV94760.1 - 9.6e-12 44.8 0.6 2.6e-06 27.4 0.0 2.6 2 0 0 2 2 2 2 Winged helix-turn helix HTH_32 PF13565.6 AHV94760.1 - 7.8e-11 42.4 3.4 9.4e-11 42.2 0.7 2.4 2 0 0 2 2 2 1 Homeodomain-like domain HTH_38 PF13936.6 AHV94760.1 - 1.5e-06 27.9 0.6 5.1e-06 26.1 0.5 2.1 2 0 0 2 2 1 1 Helix-turn-helix domain MarR_2 PF12802.7 AHV94760.1 - 8.1e-06 25.6 3.1 9.5e-05 22.2 1.2 2.6 2 0 0 2 2 2 1 MarR family HTH_31 PF13560.6 AHV94760.1 - 1.4e-05 25.3 1.7 0.00059 20.1 0.4 3.2 3 0 0 3 3 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 AHV94760.1 - 3e-05 23.6 0.1 0.0064 16.1 0.3 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 AHV94760.1 - 4.9e-05 22.8 0.1 0.00056 19.4 0.2 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 YdaS_antitoxin PF15943.5 AHV94760.1 - 0.00023 21.0 0.2 0.24 11.3 0.0 2.8 2 0 0 2 2 2 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_24 PF13412.6 AHV94760.1 - 0.00028 20.4 0.2 0.0021 17.6 0.3 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_Tnp_ISL3 PF13542.6 AHV94760.1 - 0.00029 20.2 8.7 0.002 17.5 0.6 3.9 4 0 0 4 4 3 1 Helix-turn-helix domain of transposase family ISL3 HTH_3 PF01381.22 AHV94760.1 - 0.00032 20.7 0.7 0.013 15.5 0.3 2.5 2 0 0 2 2 2 1 Helix-turn-helix HTH_Crp_2 PF13545.6 AHV94760.1 - 0.00041 20.3 0.3 0.0027 17.6 0.2 2.3 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain Trp_repressor PF01371.19 AHV94760.1 - 0.00081 19.5 0.2 0.006 16.7 0.1 2.2 2 0 0 2 2 2 1 Trp repressor protein CENP-B_N PF04218.13 AHV94760.1 - 0.0016 18.0 0.0 1.6 8.5 0.1 2.3 2 0 0 2 2 2 1 CENP-B N-terminal DNA-binding domain LacI PF00356.21 AHV94760.1 - 0.0017 18.1 1.8 0.0046 16.7 0.7 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family Fe_dep_repress PF01325.19 AHV94760.1 - 0.002 18.3 0.0 0.034 14.4 0.1 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.20 AHV94760.1 - 0.0023 17.8 0.0 0.93 9.4 0.0 2.5 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 AHV94760.1 - 0.0025 17.6 1.3 0.035 13.9 0.7 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_psq PF05225.16 AHV94760.1 - 0.0025 17.5 0.7 2.3 8.0 0.4 2.9 3 0 0 3 3 3 1 helix-turn-helix, Psq domain HTH_11 PF08279.12 AHV94760.1 - 0.0026 17.7 0.4 0.015 15.3 0.5 2.2 2 0 0 2 2 2 1 HTH domain SpoIIID PF12116.8 AHV94760.1 - 0.0026 17.8 0.0 1.1 9.4 0.0 2.4 2 0 0 2 2 2 1 Stage III sporulation protein D HTH_17 PF12728.7 AHV94760.1 - 0.0035 17.5 0.9 6.1 7.1 0.0 3.5 4 1 0 4 4 3 0 Helix-turn-helix domain HTH_AsnC-type PF13404.6 AHV94760.1 - 0.0037 17.1 2.7 0.045 13.6 1.1 2.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain RepB PF07506.11 AHV94760.1 - 0.0042 17.2 0.1 0.55 10.3 0.1 2.3 1 1 1 2 2 2 1 RepB plasmid partitioning protein GntR PF00392.21 AHV94760.1 - 0.0054 16.4 0.8 0.5 10.1 0.3 2.5 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_Tnp_1 PF01527.20 AHV94760.1 - 0.0057 16.9 0.5 0.11 12.8 0.0 2.6 1 1 1 2 2 2 1 Transposase HTH_10 PF04967.12 AHV94760.1 - 0.0077 16.0 0.1 0.049 13.4 0.2 2.2 2 0 0 2 2 2 1 HTH DNA binding domain HTH_35 PF13693.6 AHV94760.1 - 0.0094 16.0 1.5 0.073 13.1 0.6 2.7 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding UPF0175 PF03683.13 AHV94760.1 - 0.014 15.1 0.4 0.1 12.3 0.1 2.4 2 1 0 2 2 2 0 Uncharacterised protein family (UPF0175) HTH_30 PF13556.6 AHV94760.1 - 0.015 15.1 0.1 2 8.3 0.0 2.6 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain HTH_37 PF13744.6 AHV94760.1 - 0.016 15.2 0.1 0.13 12.3 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Tnp_4 PF13613.6 AHV94760.1 - 0.016 14.9 0.1 0.067 12.9 0.0 2.0 2 0 0 2 2 1 0 Helix-turn-helix of DDE superfamily endonuclease HTH_36 PF13730.6 AHV94760.1 - 0.02 14.8 0.1 0.58 10.2 0.0 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain KORA PF16509.5 AHV94760.1 - 0.035 14.4 0.1 3.6 8.0 0.0 3.0 3 0 0 3 3 3 0 TrfB plasmid transcriptional repressor MarR PF01047.22 AHV94760.1 - 0.045 13.7 0.1 0.14 12.1 0.1 1.8 2 0 0 2 2 1 0 MarR family P22_Cro PF14549.6 AHV94760.1 - 0.051 13.4 1.6 9.6 6.1 0.1 2.5 2 0 0 2 2 2 0 DNA-binding transcriptional regulator Cro Crp PF00325.20 AHV94760.1 - 0.052 13.2 3.2 0.062 13.0 0.5 2.5 3 0 0 3 3 3 0 Bacterial regulatory proteins, crp family DDE_Tnp_IS240 PF13610.6 AHV94760.1 - 0.065 13.5 0.1 0.096 12.9 0.1 1.3 1 0 0 1 1 1 0 DDE domain DUF746 PF05344.11 AHV94760.1 - 0.085 12.7 0.1 0.98 9.3 0.0 2.3 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) HTH_1 PF00126.27 AHV94760.1 - 0.1 12.5 2.8 4.7 7.2 0.5 2.6 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_26 PF13443.6 AHV94760.1 - 0.17 12.3 0.0 3.6 8.1 0.1 2.8 3 0 0 3 3 3 0 Cro/C1-type HTH DNA-binding domain HTH_8 PF02954.19 AHV94760.1 - 0.19 11.5 0.9 14 5.5 0.7 2.7 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family HTH_Tnp_Tc3_2 PF01498.18 AHV94760.1 - 0.27 11.5 2.6 0.47 10.7 0.1 2.6 3 0 0 3 3 1 0 Transposase HTH_33 PF13592.6 AHV94760.1 - 0.56 9.9 3.1 2.9 7.6 0.1 3.4 4 0 0 4 4 2 0 Winged helix-turn helix MerR PF00376.23 AHV94760.1 - 0.72 9.7 6.8 3.2 7.6 0.0 3.6 4 0 0 4 4 2 0 MerR family regulatory protein adh_short_C2 PF13561.6 AHV94761.1 - 4.7e-44 150.7 0.6 5.2e-44 150.5 0.6 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 AHV94761.1 - 5.3e-27 94.5 0.0 6.9e-27 94.2 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase Cytochrom_C PF00034.21 AHV94762.1 - 9.5e-06 26.7 0.3 5.7e-05 24.2 0.3 2.0 1 1 0 1 1 1 1 Cytochrome c Cytochrome_CBB3 PF13442.6 AHV94762.1 - 1.4e-05 25.3 0.1 2.2e-05 24.7 0.1 1.2 1 0 0 1 1 1 1 Cytochrome C oxidase, cbb3-type, subunit III 4HFCP_synth PF04476.13 AHV94762.1 - 0.094 12.4 0.0 0.14 11.9 0.0 1.2 1 0 0 1 1 1 0 4-HFC-P synthase Amidase PF01425.21 AHV94764.1 - 8.9e-28 97.4 0.0 1.9e-27 96.4 0.0 1.5 1 1 0 1 1 1 1 Amidase Aldedh PF00171.22 AHV94765.1 - 9.9e-133 443.0 0.0 1.2e-132 442.7 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family DUF1487 PF07368.11 AHV94765.1 - 0.044 13.2 0.0 0.11 11.9 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1487) YaeQ PF07152.12 AHV94765.1 - 0.1 12.2 0.0 0.26 10.9 0.0 1.6 2 0 0 2 2 2 0 YaeQ protein DRTGG PF07085.12 AHV94765.1 - 0.11 12.3 0.0 0.22 11.3 0.0 1.4 1 0 0 1 1 1 0 DRTGG domain TctC PF03401.14 AHV94767.1 - 1.2e-64 218.1 0.1 1.3e-64 217.9 0.1 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor HTH_18 PF12833.7 AHV94768.1 - 4.5e-21 74.9 0.7 4.5e-21 74.9 0.7 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_AraC PF00165.23 AHV94768.1 - 2.5e-11 43.4 0.0 6.4e-05 23.0 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family Sigma70_r4 PF04545.16 AHV94768.1 - 0.0032 16.9 0.6 0.0069 15.9 0.6 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_38 PF13936.6 AHV94768.1 - 0.057 13.2 1.0 0.48 10.2 0.3 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.6 AHV94768.1 - 0.54 10.1 3.3 9.7 6.1 0.2 2.8 3 0 0 3 3 3 0 Homeodomain-like domain DDE_Tnp_ISL3 PF01610.17 AHV94769.1 - 7.9e-65 218.9 1.2 1.1e-64 218.4 0.3 1.6 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV94769.1 - 1.4e-11 43.6 0.1 3.6e-11 42.3 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV94769.1 - 5.3e-09 36.6 11.2 1.1e-08 35.6 11.2 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV94769.1 - 0.0056 16.7 0.2 0.016 15.3 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain SLT_L PF14718.6 AHV94769.1 - 0.016 15.3 1.5 0.016 15.3 1.5 1.8 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain NOB1_Zn_bind PF08772.11 AHV94769.1 - 0.017 15.2 0.2 1.2 9.3 0.0 2.5 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-IS66 PF13005.7 AHV94769.1 - 8.2 6.9 9.6 3.6 8.1 6.6 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 PfkB PF00294.24 AHV94770.1 - 4.7e-17 62.2 0.0 5.4e-17 62.0 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Gly_rich_SFCGS PF14272.6 AHV94770.1 - 0.052 13.6 0.9 0.091 12.8 0.9 1.4 1 0 0 1 1 1 0 Glycine-rich SFCGS DUF4150 PF13665.6 AHV94770.1 - 0.13 12.5 0.0 0.18 11.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4150) UvrD-helicase PF00580.21 AHV94771.1 - 4.9e-42 144.5 0.0 3e-21 76.3 0.0 2.2 2 0 0 2 2 2 2 UvrD/REP helicase N-terminal domain UvrD_C PF13361.6 AHV94771.1 - 1.5e-21 77.2 0.0 5.4e-13 49.0 0.0 2.2 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain AAA_19 PF13245.6 AHV94771.1 - 8.9e-21 74.8 0.0 3.1e-19 69.7 0.0 3.0 2 1 0 2 2 2 1 AAA domain UvrD_C_2 PF13538.6 AHV94771.1 - 2.2e-08 33.8 5.7 0.00091 19.0 1.9 3.3 3 0 0 3 3 3 2 UvrD-like helicase C-terminal domain Viral_helicase1 PF01443.18 AHV94771.1 - 2e-06 27.8 0.6 2.8 7.6 0.2 4.2 4 0 0 4 4 4 3 Viral (Superfamily 1) RNA helicase PDDEXK_1 PF12705.7 AHV94771.1 - 1.3e-05 25.3 0.6 4.1e-05 23.6 0.6 1.8 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily AAA_30 PF13604.6 AHV94771.1 - 0.00012 21.9 1.5 0.0086 15.8 0.1 3.0 2 0 0 2 2 2 1 AAA domain Iso_dh PF00180.20 AHV94771.1 - 0.032 13.4 0.1 0.056 12.6 0.1 1.3 1 0 0 1 1 1 0 Isocitrate/isopropylmalate dehydrogenase Band_7 PF01145.25 AHV94772.1 - 2.3e-25 89.6 6.1 4.2e-25 88.8 6.1 1.4 1 1 0 1 1 1 1 SPFH domain / Band 7 family FliL PF03748.14 AHV94772.1 - 0.06 13.9 1.4 0.14 12.7 0.8 2.0 1 1 0 1 1 1 0 Flagellar basal body-associated protein FliL UDPG_MGDP_dh_N PF03721.14 AHV94773.1 - 8.4e-35 120.0 0.0 1.2e-34 119.5 0.0 1.2 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 AHV94773.1 - 1.3e-13 51.0 0.0 2.4e-13 50.1 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain ApbA PF02558.16 AHV94773.1 - 0.0016 18.1 0.0 0.0025 17.5 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_2 PF03446.15 AHV94773.1 - 0.0042 17.3 0.0 0.012 15.8 0.0 1.8 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase TrkA_N PF02254.18 AHV94773.1 - 0.0056 16.9 2.9 0.051 13.8 0.1 2.6 2 1 0 2 2 2 1 TrkA-N domain NAD_binding_11 PF14833.6 AHV94773.1 - 0.073 13.3 0.8 0.16 12.2 0.8 1.5 1 0 0 1 1 1 0 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase TPP_enzyme_C PF02775.21 AHV94775.1 - 8.9e-17 61.3 0.1 2.1e-16 60.1 0.1 1.7 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.6 AHV94775.1 - 0.00091 18.5 0.0 0.037 13.2 0.0 2.6 3 0 0 3 3 3 1 1-deoxy-D-xylulose-5-phosphate synthase TPP_enzyme_N PF02776.18 AHV94775.1 - 0.035 13.7 0.4 0.27 10.8 0.1 2.4 3 0 0 3 3 3 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4_10 PF13237.6 AHV94775.1 - 0.036 14.2 3.0 0.087 13.0 3.0 1.7 1 0 0 1 1 1 0 4Fe-4S dicluster domain Transglut_core PF01841.19 AHV94775.1 - 0.15 12.5 0.0 1.4 9.4 0.0 2.3 2 0 0 2 2 2 0 Transglutaminase-like superfamily HlyD_3 PF13437.6 AHV94776.1 - 2.1e-12 47.7 1.1 4.1e-11 43.5 0.1 2.5 2 0 0 2 2 2 1 HlyD family secretion protein Biotin_lipoyl_2 PF13533.6 AHV94776.1 - 4.7e-09 35.9 1.9 1.4e-08 34.4 0.7 2.4 2 0 0 2 2 2 1 Biotin-lipoyl like HlyD_D23 PF16576.5 AHV94776.1 - 6.9e-09 35.2 6.3 3.1e-07 29.8 5.8 2.6 2 1 0 2 2 2 1 Barrel-sandwich domain of CusB or HlyD membrane-fusion Biotin_lipoyl PF00364.22 AHV94776.1 - 7.9e-05 22.4 0.1 0.059 13.2 0.0 2.5 2 0 0 2 2 2 2 Biotin-requiring enzyme DUF945 PF06097.11 AHV94776.1 - 2.2 7.3 9.3 1.7 7.6 0.8 2.3 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF945) adh_short_C2 PF13561.6 AHV94777.1 - 3.3e-62 210.1 5.4 3.9e-62 209.8 5.4 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 AHV94777.1 - 1.8e-55 187.5 2.3 2.1e-55 187.2 2.3 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 AHV94777.1 - 1.8e-16 60.6 2.3 2.3e-16 60.2 2.3 1.2 1 0 0 1 1 1 1 KR domain NAD_binding_4 PF07993.12 AHV94777.1 - 8.6e-05 21.8 0.2 0.00022 20.5 0.2 1.8 1 1 0 1 1 1 1 Male sterility protein Epimerase PF01370.21 AHV94777.1 - 9.6e-05 21.9 0.6 0.00013 21.5 0.6 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 AHV94777.1 - 0.0091 15.1 0.8 0.023 13.8 0.8 1.6 1 1 0 1 1 1 1 RmlD substrate binding domain HEM4 PF02602.15 AHV94777.1 - 0.021 14.2 1.2 0.15 11.4 1.2 2.0 1 1 0 1 1 1 0 Uroporphyrinogen-III synthase HemD TLP1_add_C PF18313.1 AHV94777.1 - 0.029 14.3 0.6 0.091 12.7 0.2 2.2 3 0 0 3 3 3 0 Thiolase-like protein type 1 additional C-terminal domain GDP_Man_Dehyd PF16363.5 AHV94777.1 - 0.036 13.5 0.1 0.083 12.3 0.1 1.6 1 1 0 1 1 1 0 GDP-mannose 4,6 dehydratase DUF1776 PF08643.10 AHV94777.1 - 0.22 10.8 0.0 0.3 10.4 0.0 1.1 1 0 0 1 1 1 0 Fungal family of unknown function (DUF1776) FecCD PF01032.18 AHV94778.1 - 2.2e-85 286.4 37.0 2.5e-85 286.3 37.0 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 AHV94778.1 - 0.023 14.2 14.8 0.034 13.6 14.8 1.3 1 0 0 1 1 1 0 ABC 3 transport family Usp PF00582.26 AHV94779.1 - 4.8e-34 117.9 2.6 5.5e-34 117.7 2.6 1.0 1 0 0 1 1 1 1 Universal stress protein family Amidohydro_3 PF07969.11 AHV94780.1 - 5.7e-48 164.5 2.0 9.9e-47 160.5 2.0 2.0 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.20 AHV94780.1 - 7.4e-13 48.5 0.1 1.6e-12 47.5 0.1 1.6 1 1 0 1 1 1 1 Amidohydrolase family Peptidase_M23 PF01551.22 AHV94781.1 - 5.9e-32 109.7 1.2 6.1e-31 106.5 0.1 2.6 3 0 0 3 3 3 1 Peptidase family M23 LysM PF01476.20 AHV94781.1 - 2.9e-15 56.1 0.1 5e-15 55.3 0.1 1.4 1 0 0 1 1 1 1 LysM domain Biotin_lipoyl_2 PF13533.6 AHV94781.1 - 0.00028 20.7 0.1 0.045 13.6 0.0 2.6 2 0 0 2 2 2 2 Biotin-lipoyl like HlyD_D23 PF16576.5 AHV94781.1 - 0.13 11.5 0.0 4 6.6 0.0 2.2 2 0 0 2 2 2 0 Barrel-sandwich domain of CusB or HlyD membrane-fusion OTCace_N PF02729.21 AHV94782.1 - 6.5e-51 172.2 0.1 8.7e-51 171.8 0.1 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 AHV94782.1 - 1e-45 155.7 0.0 1.7e-45 154.9 0.0 1.4 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NLPC_P60 PF00877.19 AHV94783.1 - 1.3e-26 92.6 0.0 1.9e-26 92.1 0.0 1.2 1 0 0 1 1 1 1 NlpC/P60 family Peptidase_C92 PF05708.12 AHV94783.1 - 0.00023 21.3 0.0 0.21 11.7 0.0 2.3 2 1 0 2 2 2 2 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family DUF1175 PF06672.11 AHV94783.1 - 0.0013 18.5 0.0 0.42 10.3 0.0 2.5 1 1 2 3 3 3 2 Protein of unknown function (DUF1175) LRAT PF04970.13 AHV94783.1 - 0.008 16.5 0.0 0.013 15.8 0.0 1.3 1 0 0 1 1 1 1 Lecithin retinol acyltransferase CHAP PF05257.16 AHV94783.1 - 0.023 15.3 0.0 0.049 14.2 0.0 1.6 1 0 0 1 1 1 0 CHAP domain SRP54 PF00448.22 AHV94784.1 - 3.2e-66 222.7 0.5 3.2e-66 222.7 0.5 1.4 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain SRP54_N PF02881.19 AHV94784.1 - 1.6e-10 41.0 0.7 1.6e-10 41.0 0.7 1.7 2 0 0 2 2 1 1 SRP54-type protein, helical bundle domain Zeta_toxin PF06414.12 AHV94784.1 - 2e-05 24.0 0.0 3.3e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_16 PF13191.6 AHV94784.1 - 6e-05 23.5 3.6 8.4e-05 23.0 0.4 2.3 1 1 1 2 2 2 1 AAA ATPase domain AAA_30 PF13604.6 AHV94784.1 - 0.00022 21.0 6.1 0.00027 20.7 4.9 1.7 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 AHV94784.1 - 0.00032 21.0 0.1 0.00096 19.4 0.0 1.8 2 0 0 2 2 2 1 AAA domain CbiA PF01656.23 AHV94784.1 - 0.00054 20.0 0.1 0.0052 16.8 0.1 2.2 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain APS_kinase PF01583.20 AHV94784.1 - 0.0009 19.2 0.1 0.0021 17.9 0.1 1.6 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_17 PF13207.6 AHV94784.1 - 0.0013 19.2 0.2 0.012 16.0 0.0 2.1 2 0 0 2 2 2 1 AAA domain Thymidylate_kin PF02223.17 AHV94784.1 - 0.0055 16.4 0.0 0.013 15.1 0.0 1.7 1 0 0 1 1 1 1 Thymidylate kinase MeaB PF03308.16 AHV94784.1 - 0.0065 15.5 0.2 0.023 13.7 0.0 2.0 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB ABC_tran PF00005.27 AHV94784.1 - 0.0084 16.6 0.0 0.016 15.8 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_27 PF13514.6 AHV94784.1 - 0.014 15.0 0.4 0.67 9.5 0.0 2.3 1 1 1 2 2 2 0 AAA domain DUF2075 PF09848.9 AHV94784.1 - 0.021 14.1 0.1 0.03 13.6 0.1 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) cobW PF02492.19 AHV94784.1 - 0.066 12.8 0.3 0.14 11.8 0.3 1.5 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain NTPase_1 PF03266.15 AHV94784.1 - 0.069 13.1 0.4 0.34 10.8 0.1 2.1 1 1 0 2 2 2 0 NTPase Viral_helicase1 PF01443.18 AHV94784.1 - 0.089 12.5 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase MobB PF03205.14 AHV94784.1 - 0.11 12.3 0.1 0.28 11.1 0.1 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_29 PF13555.6 AHV94784.1 - 0.13 12.0 0.1 3.4 7.5 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain NACHT PF05729.12 AHV94784.1 - 0.14 12.1 1.4 0.81 9.6 0.1 2.6 3 0 0 3 3 3 0 NACHT domain AAA_33 PF13671.6 AHV94784.1 - 0.42 10.8 4.1 0.43 10.7 1.6 2.4 2 1 0 2 2 2 0 AAA domain Prenyltransf PF01255.19 AHV94786.1 - 1e-76 257.4 0.0 1.2e-76 257.2 0.0 1.0 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase Tmemb_18A PF09771.9 AHV94786.1 - 0.18 12.2 0.0 0.32 11.4 0.0 1.4 1 0 0 1 1 1 0 Transmembrane protein 188 Usp PF00582.26 AHV94787.1 - 5.7e-24 85.2 1.7 6.3e-24 85.1 1.7 1.0 1 0 0 1 1 1 1 Universal stress protein family Exosortase_EpsH PF09721.10 AHV94787.1 - 0.12 11.8 0.1 0.16 11.5 0.1 1.1 1 0 0 1 1 1 0 Transmembrane exosortase (Exosortase_EpsH) META PF03724.16 AHV94788.1 - 1.9e-22 79.3 0.1 2.4e-22 79.0 0.1 1.1 1 0 0 1 1 1 1 META domain BPD_transp_1 PF00528.22 AHV94789.1 - 1.4e-21 77.1 9.4 1.4e-21 77.1 9.4 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component HTH_IclR PF09339.10 AHV94790.1 - 9.6e-10 38.1 0.5 1.2e-09 37.8 0.5 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.12 AHV94790.1 - 1.3e-06 28.2 0.0 1.5e-06 28.0 0.0 1.1 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.7 AHV94790.1 - 7.5e-05 22.5 0.1 9.4e-05 22.2 0.1 1.2 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 AHV94790.1 - 0.00025 20.8 0.0 0.00032 20.5 0.0 1.1 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_7 PF02796.15 AHV94790.1 - 0.00061 19.8 0.0 0.00097 19.2 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_24 PF13412.6 AHV94790.1 - 0.0014 18.1 0.1 0.0026 17.3 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.20 AHV94790.1 - 0.0024 18.2 0.0 0.0029 17.9 0.0 1.1 1 0 0 1 1 1 1 Transcriptional regulator HTH_20 PF12840.7 AHV94790.1 - 0.0033 17.5 0.2 0.0044 17.1 0.2 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.6 AHV94790.1 - 0.02 14.9 0.1 0.028 14.5 0.1 1.3 1 0 0 1 1 1 0 Winged helix-turn helix HTH_AsnC-type PF13404.6 AHV94790.1 - 0.036 13.9 0.2 0.065 13.1 0.2 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_1 PF00126.27 AHV94790.1 - 0.038 13.9 0.2 0.067 13.1 0.2 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family MarR PF01047.22 AHV94790.1 - 0.043 13.7 0.0 0.057 13.3 0.0 1.2 1 0 0 1 1 1 0 MarR family Mga PF05043.13 AHV94790.1 - 0.048 14.2 0.0 0.059 14.0 0.0 1.1 1 0 0 1 1 1 0 Mga helix-turn-helix domain TetR_N PF00440.23 AHV94790.1 - 0.058 13.2 0.0 0.1 12.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_40 PF14493.6 AHV94790.1 - 0.064 13.7 0.0 0.075 13.5 0.0 1.1 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Crp_2 PF13545.6 AHV94790.1 - 0.1 12.6 0.2 0.14 12.1 0.2 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain TrmB PF01978.19 AHV94790.1 - 0.15 11.9 0.0 0.19 11.6 0.0 1.1 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF924 PF06041.11 AHV94791.1 - 7.2e-36 124.0 0.1 7.9e-36 123.9 0.1 1.0 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF924) DUF1181 PF06680.11 AHV94791.1 - 0.048 13.5 0.0 0.11 12.3 0.0 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1181) Tubulin PF00091.25 AHV94792.1 - 1e-35 123.8 0.7 1.7e-35 123.0 0.7 1.4 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 AHV94792.1 - 9.9e-32 109.1 1.6 9.9e-32 109.1 1.6 2.4 2 0 0 2 2 2 1 FtsZ family, C-terminal domain YmgD PF16456.5 AHV94792.1 - 0.012 15.7 0.1 1.9 8.6 0.1 2.7 2 0 0 2 2 2 0 YmgD protein Tubulin_2 PF13809.6 AHV94792.1 - 3.1 6.9 10.4 2.2 7.4 3.9 2.4 1 1 1 2 2 2 0 Tubulin like TPP_enzyme_N PF02776.18 AHV94793.1 - 5.3e-45 153.1 0.1 9.2e-45 152.3 0.1 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_M PF00205.22 AHV94793.1 - 4e-44 149.7 0.0 9e-44 148.5 0.0 1.6 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain POR_N PF01855.19 AHV94793.1 - 0.083 12.6 0.1 0.13 12.0 0.1 1.2 1 0 0 1 1 1 0 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg tRNA_Me_trans PF03054.16 AHV94794.1 - 3.9e-128 427.2 0.0 4.5e-128 427.0 0.0 1.0 1 0 0 1 1 1 1 tRNA methyl transferase NAD_synthase PF02540.17 AHV94794.1 - 4.9e-08 32.4 0.0 3.3e-05 23.1 0.0 2.2 2 0 0 2 2 2 2 NAD synthase ThiI PF02568.14 AHV94794.1 - 1.5e-05 24.7 0.0 0.00022 20.9 0.0 2.0 2 0 0 2 2 2 1 Thiamine biosynthesis protein (ThiI) QueC PF06508.13 AHV94794.1 - 2.2e-05 24.0 0.0 0.00025 20.6 0.0 2.1 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 AHV94794.1 - 0.015 15.0 0.0 0.02 14.6 0.0 1.4 1 0 0 1 1 1 0 Asparagine synthase ATP_bind_3 PF01171.20 AHV94794.1 - 0.055 13.2 0.2 0.7 9.6 0.0 2.2 2 0 0 2 2 2 0 PP-loop family DEDD_Tnp_IS110 PF01548.17 AHV94794.1 - 0.091 12.6 0.0 0.18 11.7 0.0 1.5 1 0 0 1 1 1 0 Transposase Arginosuc_synth PF00764.19 AHV94794.1 - 0.14 11.4 0.1 0.19 11.0 0.1 1.1 1 0 0 1 1 1 0 Arginosuccinate synthase ECH_1 PF00378.20 AHV94795.1 - 3.1e-47 161.0 0.0 3.5e-47 160.8 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 AHV94795.1 - 1e-27 97.5 0.1 2.8e-26 92.8 0.1 2.0 1 1 0 1 1 1 1 Enoyl-CoA hydratase/isomerase TANGO2 PF05742.12 AHV94796.1 - 8.2e-56 189.9 0.0 9.5e-56 189.7 0.0 1.0 1 0 0 1 1 1 1 Transport and Golgi organisation 2 Aminotran_3 PF00202.21 AHV94798.1 - 1.1e-64 218.7 0.0 1.4e-64 218.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Beta_elim_lyase PF01212.21 AHV94798.1 - 0.12 11.6 0.0 0.17 11.1 0.0 1.2 1 0 0 1 1 1 0 Beta-eliminating lyase Aminotran_1_2 PF00155.21 AHV94798.1 - 0.2 10.8 0.0 0.33 10.1 0.0 1.4 1 0 0 1 1 1 0 Aminotransferase class I and II rve PF00665.26 AHV94799.1 - 2.9e-32 111.3 0.7 4.3e-32 110.8 0.1 1.6 2 0 0 2 2 1 1 Integrase core domain LZ_Tnp_IS481 PF13011.6 AHV94799.1 - 1.9e-21 76.3 2.6 1.1e-19 70.7 0.4 2.6 1 1 1 2 2 2 1 leucine-zipper of insertion element IS481 rve_3 PF13683.6 AHV94799.1 - 5.1e-19 67.8 2.7 1.2e-18 66.6 2.7 1.7 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.6 AHV94799.1 - 1.6e-16 59.6 4.2 1.2e-07 31.3 0.1 2.7 2 0 0 2 2 2 2 Homeodomain-like domain HTH_28 PF13518.6 AHV94799.1 - 5.9e-15 55.1 6.1 5.9e-11 42.3 0.1 3.4 4 0 0 4 4 3 2 Helix-turn-helix domain HTH_29 PF13551.6 AHV94799.1 - 1.8e-11 43.9 0.5 2.6e-06 27.4 0.0 2.6 2 0 0 2 2 2 2 Winged helix-turn helix HTH_32 PF13565.6 AHV94799.1 - 3.8e-10 40.2 0.7 3.8e-10 40.2 0.7 2.4 2 1 0 2 2 2 1 Homeodomain-like domain HTH_38 PF13936.6 AHV94799.1 - 5.4e-06 26.1 0.5 1.9e-05 24.3 0.4 2.1 2 0 0 2 2 1 1 Helix-turn-helix domain MarR_2 PF12802.7 AHV94799.1 - 3e-05 23.8 3.0 0.00037 20.3 1.1 2.6 2 0 0 2 2 2 1 MarR family HTH_31 PF13560.6 AHV94799.1 - 6.8e-05 23.1 1.5 0.0033 17.8 0.3 3.2 3 0 0 3 3 3 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 AHV94799.1 - 0.00013 21.4 0.1 0.0016 17.9 0.2 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 YdaS_antitoxin PF15943.5 AHV94799.1 - 0.0003 20.6 0.2 0.33 10.9 0.0 2.8 2 0 0 2 2 2 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT Sigma70_r4_2 PF08281.12 AHV94799.1 - 0.00043 19.9 0.1 0.092 12.4 0.2 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_Tnp_ISL3 PF13542.6 AHV94799.1 - 0.00057 19.3 8.6 0.0047 16.3 0.6 3.9 4 0 0 4 4 3 1 Helix-turn-helix domain of transposase family ISL3 HTH_24 PF13412.6 AHV94799.1 - 0.00062 19.3 0.2 0.0045 16.5 0.3 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_3 PF01381.22 AHV94799.1 - 0.00094 19.2 0.6 0.041 14.0 0.2 2.5 2 0 0 2 2 2 1 Helix-turn-helix LacI PF00356.21 AHV94799.1 - 0.0015 18.3 1.6 0.0044 16.8 0.6 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family Trp_repressor PF01371.19 AHV94799.1 - 0.0016 18.5 0.2 0.012 15.7 0.1 2.2 2 0 0 2 2 2 1 Trp repressor protein HTH_Crp_2 PF13545.6 AHV94799.1 - 0.002 18.1 0.3 0.013 15.4 0.1 2.3 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain SpoIIID PF12116.8 AHV94799.1 - 0.003 17.6 0.0 1.1 9.4 0.0 2.4 2 0 0 2 2 2 1 Stage III sporulation protein D HTH_Tnp_1 PF01527.20 AHV94799.1 - 0.0042 17.4 0.4 0.11 12.8 0.0 2.7 1 1 1 2 2 2 1 Transposase CENP-B_N PF04218.13 AHV94799.1 - 0.0046 16.6 0.0 3.7 7.2 0.0 2.3 2 0 0 2 2 2 1 CENP-B N-terminal DNA-binding domain Fe_dep_repress PF01325.19 AHV94799.1 - 0.0051 17.0 0.0 0.086 13.1 0.1 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.20 AHV94799.1 - 0.0056 16.5 0.0 2.2 8.2 0.0 2.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 AHV94799.1 - 0.0079 16.0 0.9 0.12 12.1 0.4 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_17 PF12728.7 AHV94799.1 - 0.0082 16.3 0.6 6.1 7.1 0.0 3.3 3 1 0 3 3 3 0 Helix-turn-helix domain HTH_AsnC-type PF13404.6 AHV94799.1 - 0.0095 15.7 2.3 0.13 12.1 0.9 2.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain GntR PF00392.21 AHV94799.1 - 0.013 15.1 0.8 1.2 8.8 0.3 2.6 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_psq PF05225.16 AHV94799.1 - 0.017 14.8 0.5 8.2 6.3 0.0 2.9 3 0 0 3 3 3 0 helix-turn-helix, Psq domain HTH_11 PF08279.12 AHV94799.1 - 0.026 14.5 0.5 0.15 12.0 0.5 2.2 2 0 0 2 2 2 0 HTH domain HTH_10 PF04967.12 AHV94799.1 - 0.027 14.2 0.0 0.17 11.7 0.1 2.2 2 0 0 2 2 2 0 HTH DNA binding domain RepB PF07506.11 AHV94799.1 - 0.03 14.4 0.1 3.7 7.6 0.1 2.3 1 1 1 2 2 2 0 RepB plasmid partitioning protein HTH_Tnp_4 PF13613.6 AHV94799.1 - 0.033 13.9 0.1 0.13 12.0 0.1 2.0 2 0 0 2 2 1 0 Helix-turn-helix of DDE superfamily endonuclease HTH_35 PF13693.6 AHV94799.1 - 0.034 14.2 1.2 0.3 11.2 0.4 2.7 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding HTH_30 PF13556.6 AHV94799.1 - 0.034 14.0 0.0 2 8.3 0.0 2.5 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain DDE_Tnp_IS240 PF13610.6 AHV94799.1 - 0.048 13.9 0.1 0.071 13.3 0.1 1.3 1 0 0 1 1 1 0 DDE domain P22_Cro PF14549.6 AHV94799.1 - 0.062 13.2 1.5 9.6 6.1 0.1 2.5 2 0 0 2 2 2 0 DNA-binding transcriptional regulator Cro HTH_37 PF13744.6 AHV94799.1 - 0.068 13.1 0.1 0.55 10.2 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain UPF0175 PF03683.13 AHV94799.1 - 0.073 12.8 0.3 0.56 10.0 0.1 2.4 2 1 0 2 2 2 0 Uncharacterised protein family (UPF0175) HTH_1 PF00126.27 AHV94799.1 - 0.098 12.6 1.9 7.3 6.6 0.2 2.6 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family Crp PF00325.20 AHV94799.1 - 0.11 12.2 2.8 0.16 11.6 0.4 2.6 3 0 0 3 3 3 0 Bacterial regulatory proteins, crp family DUF746 PF05344.11 AHV94799.1 - 0.11 12.3 0.1 0.98 9.3 0.0 2.3 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) MarR PF01047.22 AHV94799.1 - 0.11 12.4 0.1 0.36 10.8 0.1 1.8 2 0 0 2 2 1 0 MarR family KORA PF16509.5 AHV94799.1 - 0.14 12.5 0.1 14 6.0 0.0 3.0 3 0 0 3 3 3 0 TrfB plasmid transcriptional repressor HTH_36 PF13730.6 AHV94799.1 - 0.17 11.8 0.0 5.2 7.1 0.0 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_Tnp_Tc3_2 PF01498.18 AHV94799.1 - 0.38 11.0 2.7 0.63 10.3 0.1 2.6 3 0 0 3 3 1 0 Transposase MerR PF00376.23 AHV94799.1 - 0.77 9.6 6.8 3.2 7.6 0.0 3.6 4 0 0 4 4 2 0 MerR family regulatory protein TAL_FSA PF00923.19 AHV94800.1 - 1.3e-89 300.3 0.0 1.5e-89 300.2 0.0 1.0 1 0 0 1 1 1 1 Transaldolase/Fructose-6-phosphate aldolase rve PF00665.26 AHV94801.1 - 2.9e-32 111.3 0.7 4.3e-32 110.8 0.1 1.6 2 0 0 2 2 1 1 Integrase core domain LZ_Tnp_IS481 PF13011.6 AHV94801.1 - 7.7e-22 77.6 2.7 1.1e-19 70.7 0.4 2.6 1 1 1 2 2 2 1 leucine-zipper of insertion element IS481 rve_3 PF13683.6 AHV94801.1 - 5e-19 67.8 2.7 1.2e-18 66.6 2.7 1.7 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.6 AHV94801.1 - 6.1e-17 60.9 4.4 1.2e-07 31.3 0.1 2.7 2 0 0 2 2 2 2 Homeodomain-like domain HTH_28 PF13518.6 AHV94801.1 - 1.5e-15 57.1 6.5 5.9e-11 42.3 0.1 3.4 4 0 0 4 4 3 2 Helix-turn-helix domain HTH_29 PF13551.6 AHV94801.1 - 9.8e-12 44.7 0.6 2.6e-06 27.4 0.0 2.6 2 0 0 2 2 2 2 Winged helix-turn helix HTH_32 PF13565.6 AHV94801.1 - 9.4e-11 42.2 0.7 9.4e-11 42.2 0.7 2.4 2 1 0 2 2 2 1 Homeodomain-like domain HTH_38 PF13936.6 AHV94801.1 - 1.5e-06 27.9 0.6 5.1e-06 26.1 0.5 2.1 2 0 0 2 2 1 1 Helix-turn-helix domain MarR_2 PF12802.7 AHV94801.1 - 8e-06 25.6 3.1 9.5e-05 22.2 1.2 2.6 2 0 0 2 2 2 1 MarR family HTH_31 PF13560.6 AHV94801.1 - 1.4e-05 25.4 1.7 0.00059 20.1 0.4 3.2 3 0 0 3 3 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 AHV94801.1 - 3e-05 23.6 0.1 0.0064 16.1 0.3 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 AHV94801.1 - 4.6e-05 22.9 0.1 0.00056 19.4 0.2 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 YdaS_antitoxin PF15943.5 AHV94801.1 - 0.00022 21.0 0.2 0.24 11.3 0.0 2.8 2 0 0 2 2 2 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_Tnp_ISL3 PF13542.6 AHV94801.1 - 0.00023 20.5 8.5 0.002 17.5 0.6 3.9 4 0 0 4 4 3 1 Helix-turn-helix domain of transposase family ISL3 HTH_24 PF13412.6 AHV94801.1 - 0.00028 20.4 0.2 0.0021 17.6 0.3 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_3 PF01381.22 AHV94801.1 - 0.00032 20.7 0.7 0.013 15.5 0.3 2.5 2 0 0 2 2 2 1 Helix-turn-helix HTH_Crp_2 PF13545.6 AHV94801.1 - 0.0004 20.3 0.3 0.0027 17.6 0.2 2.3 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain Trp_repressor PF01371.19 AHV94801.1 - 0.00081 19.5 0.2 0.006 16.7 0.1 2.2 2 0 0 2 2 2 1 Trp repressor protein CENP-B_N PF04218.13 AHV94801.1 - 0.0016 18.0 0.0 1.6 8.5 0.1 2.3 2 0 0 2 2 2 1 CENP-B N-terminal DNA-binding domain LacI PF00356.21 AHV94801.1 - 0.0017 18.1 1.8 0.0046 16.7 0.7 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family Fe_dep_repress PF01325.19 AHV94801.1 - 0.002 18.3 0.0 0.034 14.4 0.1 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.20 AHV94801.1 - 0.0023 17.8 0.0 0.93 9.4 0.0 2.5 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 AHV94801.1 - 0.0025 17.6 1.3 0.035 13.9 0.7 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_psq PF05225.16 AHV94801.1 - 0.0025 17.5 0.7 2.3 8.0 0.4 2.9 3 0 0 3 3 3 1 helix-turn-helix, Psq domain HTH_11 PF08279.12 AHV94801.1 - 0.0026 17.7 0.4 0.015 15.3 0.5 2.2 2 0 0 2 2 2 1 HTH domain SpoIIID PF12116.8 AHV94801.1 - 0.0026 17.8 0.0 1.1 9.4 0.0 2.4 2 0 0 2 2 2 1 Stage III sporulation protein D HTH_AsnC-type PF13404.6 AHV94801.1 - 0.0036 17.1 2.7 0.045 13.6 1.1 2.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain RepB PF07506.11 AHV94801.1 - 0.0042 17.2 0.1 0.55 10.3 0.1 2.3 1 1 1 2 2 2 1 RepB plasmid partitioning protein HTH_17 PF12728.7 AHV94801.1 - 0.0043 17.2 0.7 6.1 7.1 0.0 3.3 3 1 0 3 3 3 0 Helix-turn-helix domain HTH_Tnp_1 PF01527.20 AHV94801.1 - 0.005 17.1 0.5 0.11 12.8 0.0 2.7 1 1 1 2 2 2 1 Transposase GntR PF00392.21 AHV94801.1 - 0.0053 16.4 0.8 0.5 10.1 0.3 2.5 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_10 PF04967.12 AHV94801.1 - 0.0077 16.0 0.1 0.049 13.4 0.2 2.2 2 0 0 2 2 2 1 HTH DNA binding domain HTH_35 PF13693.6 AHV94801.1 - 0.0093 16.0 1.5 0.073 13.1 0.6 2.7 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding UPF0175 PF03683.13 AHV94801.1 - 0.014 15.1 0.4 0.1 12.3 0.1 2.4 2 1 0 2 2 2 0 Uncharacterised protein family (UPF0175) HTH_30 PF13556.6 AHV94801.1 - 0.015 15.1 0.1 2 8.3 0.0 2.6 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain HTH_37 PF13744.6 AHV94801.1 - 0.016 15.2 0.1 0.13 12.3 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Tnp_4 PF13613.6 AHV94801.1 - 0.016 14.9 0.1 0.067 12.9 0.0 2.0 2 0 0 2 2 1 0 Helix-turn-helix of DDE superfamily endonuclease HTH_36 PF13730.6 AHV94801.1 - 0.02 14.8 0.1 0.58 10.2 0.0 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain KORA PF16509.5 AHV94801.1 - 0.034 14.4 0.1 3.6 8.0 0.0 3.0 3 0 0 3 3 3 0 TrfB plasmid transcriptional repressor MarR PF01047.22 AHV94801.1 - 0.045 13.7 0.1 0.14 12.1 0.1 1.8 2 0 0 2 2 1 0 MarR family DDE_Tnp_IS240 PF13610.6 AHV94801.1 - 0.048 13.9 0.1 0.071 13.3 0.1 1.3 1 0 0 1 1 1 0 DDE domain Crp PF00325.20 AHV94801.1 - 0.05 13.3 3.2 0.062 13.0 0.5 2.5 3 0 0 3 3 3 0 Bacterial regulatory proteins, crp family P22_Cro PF14549.6 AHV94801.1 - 0.051 13.4 1.6 9.6 6.1 0.1 2.5 2 0 0 2 2 2 0 DNA-binding transcriptional regulator Cro DUF746 PF05344.11 AHV94801.1 - 0.085 12.7 0.1 0.98 9.3 0.0 2.3 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) HTH_1 PF00126.27 AHV94801.1 - 0.1 12.5 2.8 4.7 7.2 0.5 2.6 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_26 PF13443.6 AHV94801.1 - 0.17 12.3 0.0 3.6 8.1 0.1 2.8 3 0 0 3 3 3 0 Cro/C1-type HTH DNA-binding domain HTH_8 PF02954.19 AHV94801.1 - 0.19 11.5 0.9 14 5.5 0.7 2.7 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family HTH_Tnp_Tc3_2 PF01498.18 AHV94801.1 - 0.27 11.5 2.6 0.47 10.7 0.1 2.6 3 0 0 3 3 1 0 Transposase HTH_33 PF13592.6 AHV94801.1 - 0.56 9.9 3.1 2.9 7.6 0.1 3.4 4 0 0 4 4 2 0 Winged helix-turn helix MerR PF00376.23 AHV94801.1 - 0.72 9.7 6.8 3.2 7.6 0.0 3.6 4 0 0 4 4 2 0 MerR family regulatory protein TctC PF03401.14 AHV94802.1 - 7.7e-92 307.2 0.2 8.7e-92 307.0 0.2 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor Asp_decarbox PF02261.16 AHV94803.1 - 2.1e-47 159.8 0.0 2.3e-47 159.7 0.0 1.0 1 0 0 1 1 1 1 Aspartate decarboxylase Sigma70_r2 PF04542.14 AHV94803.1 - 0.086 12.6 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 Sigma-70 region 2 BCCT PF02028.17 AHV94804.1 - 2e-86 290.4 9.5 2.3e-86 290.2 9.5 1.0 1 0 0 1 1 1 1 BCCT, betaine/carnitine/choline family transporter OppC_N PF12911.7 AHV94804.1 - 0.1 12.6 5.6 0.39 10.7 2.3 2.8 3 0 0 3 3 3 0 N-terminal TM domain of oligopeptide transport permease C ATP_synth_reg PF14960.6 AHV94804.1 - 0.13 11.7 0.5 0.38 10.3 0.5 1.8 1 0 0 1 1 1 0 ATP synthase regulation OMP_b-brl PF13505.6 AHV94805.1 - 0.034 14.3 0.0 0.039 14.1 0.0 1.1 1 0 0 1 1 1 0 Outer membrane protein beta-barrel domain FliP PF00813.20 AHV94806.1 - 6.9e-77 257.7 10.7 8.6e-77 257.3 10.7 1.1 1 0 0 1 1 1 1 FliP family FtsQ PF03799.15 AHV94807.1 - 2.9e-25 89.4 0.0 4.7e-25 88.7 0.0 1.3 1 0 0 1 1 1 1 Cell division protein FtsQ POTRA_1 PF08478.10 AHV94807.1 - 4.5e-14 52.5 0.0 8.7e-14 51.6 0.0 1.5 1 0 0 1 1 1 1 POTRA domain, FtsQ-type CMD PF02627.20 AHV94808.1 - 1e-10 41.5 1.4 1.1e-10 41.4 0.3 1.7 2 0 0 2 2 2 1 Carboxymuconolactone decarboxylase family Bac_DNA_binding PF00216.21 AHV94809.1 - 3e-34 117.1 0.5 3.3e-34 116.9 0.5 1.0 1 0 0 1 1 1 1 Bacterial DNA-binding protein HU-HIG PF18291.1 AHV94809.1 - 3.5e-10 40.0 0.0 3.7e-10 39.9 0.0 1.0 1 0 0 1 1 1 1 HU domain fused to wHTH, Ig, or Glycine-rich motif HU-CCDC81_bac_2 PF18175.1 AHV94809.1 - 1e-05 25.3 0.0 1.4e-05 24.9 0.0 1.1 1 0 0 1 1 1 1 CCDC81-like prokaryotic HU domain 2 HU-CCDC81_euk_1 PF14908.6 AHV94809.1 - 0.071 13.3 0.0 0.075 13.2 0.0 1.1 1 0 0 1 1 1 0 CCDC81 eukaryotic HU domain 1 RNase_E_G PF10150.9 AHV94810.1 - 3.2e-91 305.5 0.1 4.7e-91 305.0 0.1 1.2 1 0 0 1 1 1 1 Ribonuclease E/G family S1 PF00575.23 AHV94810.1 - 2.9e-11 43.5 0.1 6.1e-11 42.5 0.1 1.6 1 0 0 1 1 1 1 S1 RNA binding domain Zn_Tnp_IS1 PF03811.13 AHV94810.1 - 2.4 8.0 6.2 0.13 12.0 0.2 2.0 2 0 0 2 2 2 0 InsA N-terminal domain DUF937 PF06078.11 AHV94811.1 - 1.7e-07 31.9 0.9 1.7e-07 31.9 0.9 1.9 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF937) Biotin_lipoyl PF00364.22 AHV94812.1 - 1e-25 89.3 0.7 1.5e-25 88.8 0.1 1.5 2 0 0 2 2 2 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 AHV94812.1 - 1.7e-09 37.4 1.2 0.00042 20.1 0.0 3.2 3 1 1 4 4 4 2 Biotin-lipoyl like YqfD PF06898.11 AHV94812.1 - 0.0031 16.4 0.7 0.051 12.4 0.1 2.1 1 1 1 2 2 2 1 Putative stage IV sporulation protein YqfD HlyD_3 PF13437.6 AHV94812.1 - 0.0049 17.5 0.5 0.035 14.8 0.0 2.5 3 0 0 3 3 3 1 HlyD family secretion protein HlyD_D23 PF16576.5 AHV94812.1 - 0.013 14.8 0.0 0.54 9.4 0.0 2.2 1 1 1 2 2 2 0 Barrel-sandwich domain of CusB or HlyD membrane-fusion GCV_H PF01597.19 AHV94812.1 - 0.02 14.8 0.7 0.031 14.1 0.1 1.6 2 0 0 2 2 2 0 Glycine cleavage H-protein RnfC_N PF13375.6 AHV94812.1 - 0.099 12.6 0.1 0.55 10.2 0.0 2.1 1 1 1 2 2 2 0 RnfC Barrel sandwich hybrid domain PepSY_TM PF03929.16 AHV94813.1 - 1.6e-58 198.7 4.6 1.9e-58 198.4 4.6 1.1 1 0 0 1 1 1 1 PepSY-associated TM region DUF4405 PF14358.6 AHV94813.1 - 0.0041 17.6 12.2 0.03 14.9 0.8 4.0 3 2 2 5 5 5 2 Domain of unknown function (DUF4405) PepSY_TM_like_2 PF16357.5 AHV94813.1 - 0.018 15.0 0.8 0.071 13.1 0.1 2.2 2 1 0 2 2 2 0 Putative PepSY_TM-like DUF1129 PF06570.11 AHV94813.1 - 0.048 13.2 1.4 0.13 11.7 1.4 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) PepSY PF03413.19 AHV94813.1 - 0.1 13.2 0.0 1.6 9.4 0.0 2.3 2 0 0 2 2 2 0 Peptidase propeptide and YPEB domain Cytochrom_B561 PF03188.16 AHV94813.1 - 0.13 12.4 7.0 1.2 9.2 0.9 2.8 3 0 0 3 3 3 0 Eukaryotic cytochrome b561 Ferric_reduct PF01794.19 AHV94813.1 - 0.52 10.4 5.0 8.9 6.5 0.1 2.8 2 1 0 2 2 2 0 Ferric reductase like transmembrane component DDE_Tnp_ISL3 PF01610.17 AHV94814.1 - 7.9e-65 218.9 1.2 1.1e-64 218.4 0.3 1.6 2 0 0 2 2 2 1 Transposase HTH_Tnp_ISL3 PF13542.6 AHV94814.1 - 1.4e-11 43.6 0.1 3.6e-11 42.3 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV94814.1 - 5.3e-09 36.6 11.2 1.1e-08 35.6 11.2 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV94814.1 - 0.0056 16.7 0.2 0.016 15.3 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain SLT_L PF14718.6 AHV94814.1 - 0.016 15.3 1.5 0.016 15.3 1.5 1.8 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain NOB1_Zn_bind PF08772.11 AHV94814.1 - 0.017 15.2 0.2 1.2 9.3 0.0 2.5 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-IS66 PF13005.7 AHV94814.1 - 8.2 6.9 9.6 3.6 8.1 6.6 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 rve PF00665.26 AHV94815.1 - 2.6e-32 111.5 0.7 4e-32 110.9 0.1 1.6 2 0 0 2 2 1 1 Integrase core domain rve_3 PF13683.6 AHV94815.1 - 4.3e-19 68.0 2.7 1.1e-18 66.7 2.7 1.8 1 0 0 1 1 1 1 Integrase core domain LZ_Tnp_IS481 PF13011.6 AHV94815.1 - 4.7e-14 52.7 2.0 1.1e-11 45.1 0.2 2.7 1 1 1 2 2 2 1 leucine-zipper of insertion element IS481 HTH_23 PF13384.6 AHV94815.1 - 3.6e-13 48.9 3.7 2.9e-07 30.1 0.9 3.0 2 1 0 2 2 2 2 Homeodomain-like domain HTH_32 PF13565.6 AHV94815.1 - 8.8e-11 42.3 0.7 8.8e-11 42.3 0.7 2.6 3 1 0 3 3 2 1 Homeodomain-like domain HTH_28 PF13518.6 AHV94815.1 - 3.2e-10 40.0 6.6 1.5e-05 25.0 0.1 3.5 4 0 0 4 4 3 2 Helix-turn-helix domain HTH_29 PF13551.6 AHV94815.1 - 3e-09 36.8 0.8 0.00085 19.3 0.0 2.7 2 0 0 2 2 2 2 Winged helix-turn helix HTH_38 PF13936.6 AHV94815.1 - 1.9e-06 27.6 0.5 4.8e-06 26.2 0.5 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 AHV94815.1 - 2.6e-05 24.0 2.0 9e-05 22.3 1.2 2.3 2 0 0 2 2 2 1 MarR family HTH_31 PF13560.6 AHV94815.1 - 5.5e-05 23.4 3.6 0.00058 20.1 0.5 3.2 3 0 0 3 3 3 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 AHV94815.1 - 9.5e-05 21.8 0.1 0.00054 19.4 0.2 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_24 PF13412.6 AHV94815.1 - 0.00066 19.2 0.3 0.002 17.7 0.3 1.8 2 0 0 2 2 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 AHV94815.1 - 0.00068 19.6 0.2 0.0026 17.7 0.2 2.0 2 0 0 2 2 1 1 Crp-like helix-turn-helix domain Sigma70_r4_2 PF08281.12 AHV94815.1 - 0.00094 18.8 0.4 0.0061 16.2 0.3 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 YdaS_antitoxin PF15943.5 AHV94815.1 - 0.0012 18.7 0.1 0.23 11.3 0.0 2.8 2 0 0 2 2 2 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_Tnp_ISL3 PF13542.6 AHV94815.1 - 0.0019 17.6 0.6 0.0019 17.6 0.6 3.8 5 0 0 5 5 4 1 Helix-turn-helix domain of transposase family ISL3 HTH_3 PF01381.22 AHV94815.1 - 0.0023 18.0 0.6 0.013 15.6 0.3 2.2 2 0 0 2 2 2 1 Helix-turn-helix Fe_dep_repress PF01325.19 AHV94815.1 - 0.0026 17.9 0.0 0.032 14.4 0.1 2.2 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain Trp_repressor PF01371.19 AHV94815.1 - 0.0028 17.8 0.1 0.0057 16.7 0.1 1.5 1 0 0 1 1 1 1 Trp repressor protein LacI PF00356.21 AHV94815.1 - 0.0044 16.8 0.7 0.0044 16.8 0.7 1.9 2 0 0 2 2 1 1 Bacterial regulatory proteins, lacI family HTH_11 PF08279.12 AHV94815.1 - 0.0054 16.6 0.5 0.014 15.3 0.5 1.7 1 0 0 1 1 1 1 HTH domain GntR PF00392.21 AHV94815.1 - 0.0067 16.1 0.7 0.48 10.1 0.3 2.5 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_10 PF04967.12 AHV94815.1 - 0.0087 15.8 0.1 0.047 13.5 0.2 2.1 2 0 0 2 2 2 1 HTH DNA binding domain HTH_IclR PF09339.10 AHV94815.1 - 0.009 15.8 0.9 0.033 14.0 0.7 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_35 PF13693.6 AHV94815.1 - 0.0091 16.0 1.1 0.07 13.2 0.6 2.6 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 AHV94815.1 - 0.014 15.2 2.4 0.043 13.6 1.1 2.4 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_Tnp_4 PF13613.6 AHV94815.1 - 0.017 14.9 0.1 0.064 13.0 0.0 2.0 2 0 0 2 2 1 0 Helix-turn-helix of DDE superfamily endonuclease HTH_36 PF13730.6 AHV94815.1 - 0.033 14.1 0.1 0.55 10.2 0.0 2.7 3 0 0 3 3 3 0 Helix-turn-helix domain UPF0175 PF03683.13 AHV94815.1 - 0.043 13.5 0.1 0.096 12.4 0.1 1.6 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0175) DDE_Tnp_IS240 PF13610.6 AHV94815.1 - 0.046 14.0 0.1 0.065 13.5 0.1 1.2 1 0 0 1 1 1 0 DDE domain CENP-B_N PF04218.13 AHV94815.1 - 0.048 13.3 0.1 1.5 8.5 0.1 2.3 2 0 0 2 2 2 0 CENP-B N-terminal DNA-binding domain HTH_37 PF13744.6 AHV94815.1 - 0.05 13.6 0.1 0.12 12.4 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain MarR PF01047.22 AHV94815.1 - 0.058 13.3 0.1 0.14 12.1 0.1 1.6 1 0 0 1 1 1 0 MarR family Crp PF00325.20 AHV94815.1 - 0.06 13.0 0.5 0.06 13.0 0.5 2.7 4 0 0 4 4 2 0 Bacterial regulatory proteins, crp family HTH_Tnp_Tc3_2 PF01498.18 AHV94815.1 - 0.089 13.0 0.2 0.44 10.8 0.1 2.2 2 0 0 2 2 1 0 Transposase KORA PF16509.5 AHV94815.1 - 0.092 13.0 0.0 3.4 8.0 0.0 2.5 2 0 0 2 2 2 0 TrfB plasmid transcriptional repressor DUF977 PF06163.11 AHV94815.1 - 0.13 12.2 0.5 20 5.2 0.0 2.5 3 0 0 3 3 2 0 Bacterial protein of unknown function (DUF977) Sigma54_DBD PF04552.13 AHV94815.1 - 0.16 11.7 0.1 0.28 10.9 0.1 1.3 1 0 0 1 1 1 0 Sigma-54, DNA binding domain TrmB PF01978.19 AHV94815.1 - 0.17 11.8 0.0 0.63 10.0 0.1 1.8 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB P22_Cro PF14549.6 AHV94815.1 - 0.21 11.5 0.7 11 5.9 0.2 2.5 2 0 0 2 2 2 0 DNA-binding transcriptional regulator Cro HTH_26 PF13443.6 AHV94815.1 - 0.22 12.0 0.1 3.4 8.2 0.1 2.7 3 0 0 3 3 3 0 Cro/C1-type HTH DNA-binding domain HTH_17 PF12728.7 AHV94815.1 - 0.27 11.4 1.0 7.7 6.8 0.1 3.2 3 1 1 4 4 2 0 Helix-turn-helix domain MerR PF00376.23 AHV94815.1 - 4.7 7.1 7.4 13 5.6 0.1 3.6 4 0 0 4 4 4 0 MerR family regulatory protein NIR_SIR_ferr PF03460.17 AHV94816.1 - 1e-19 70.2 0.0 2.1e-19 69.1 0.0 1.6 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain NIR_SIR PF01077.22 AHV94816.1 - 7.4e-05 22.3 0.0 0.00014 21.4 0.0 1.4 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain AraC_binding_2 PF14525.6 AHV94817.1 - 1.6e-21 76.7 0.5 1.6e-21 76.7 0.5 1.9 2 1 1 3 3 3 1 AraC-binding-like domain HTH_18 PF12833.7 AHV94817.1 - 2.2e-16 59.9 2.9 2.2e-16 59.9 2.9 2.1 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_AraC PF00165.23 AHV94817.1 - 1.3e-14 53.8 0.1 7.1e-09 35.5 0.0 2.7 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix proteins, AraC family AraC_binding PF02311.19 AHV94817.1 - 0.00016 21.6 0.1 0.00032 20.6 0.1 1.7 1 0 0 1 1 1 1 AraC-like ligand binding domain HTH_31 PF13560.6 AHV94817.1 - 0.48 10.8 5.4 0.99 9.8 0.1 3.1 3 0 0 3 3 3 0 Helix-turn-helix domain DDE_Tnp_ISL3 PF01610.17 AHV94818.1 - 5.8e-39 134.2 1.8 1.5e-22 80.5 0.2 2.7 2 1 1 3 3 3 2 Transposase HTH_Tnp_ISL3 PF13542.6 AHV94818.1 - 1e-11 44.0 0.1 2.7e-11 42.7 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.6 AHV94818.1 - 4.5e-09 36.8 11.2 8.5e-09 35.9 11.2 1.5 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRho PF16733.5 AHV94818.1 - 0.0042 17.1 0.2 0.012 15.6 0.0 1.8 2 0 0 2 2 2 1 Rhomboid N-terminal domain NOB1_Zn_bind PF08772.11 AHV94818.1 - 0.011 15.9 0.2 0.95 9.7 0.0 2.5 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like SLT_L PF14718.6 AHV94818.1 - 0.012 15.7 1.5 0.012 15.7 1.5 1.8 2 0 0 2 2 2 0 Soluble lytic murein transglycosylase L domain zf-IS66 PF13005.7 AHV94818.1 - 3.7 8.0 8.8 2.7 8.5 6.6 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 ABC_tran PF00005.27 AHV94819.1 - 5.2e-28 98.3 0.0 7.2e-28 97.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 AHV94819.1 - 8.7e-18 64.6 0.6 1.6e-17 63.8 0.6 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 AHV94819.1 - 0.0097 15.7 0.2 3.8 7.2 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system Herpes_TK PF00693.18 AHV94819.1 - 0.11 11.7 0.0 0.18 11.0 0.0 1.2 1 0 0 1 1 1 0 Thymidine kinase from herpesvirus AAA_29 PF13555.6 AHV94819.1 - 0.14 11.9 0.0 0.25 11.1 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.6 AHV94819.1 - 0.33 11.2 0.9 2.9 8.2 0.3 2.3 2 0 0 2 2 2 0 AAA domain Capsule_synth PF05159.14 AHV94820.1 - 2.1e-92 309.9 0.0 1e-49 169.7 0.0 4.1 2 2 0 2 2 2 2 Capsule polysaccharide biosynthesis protein SLT PF01464.20 AHV94821.1 - 8.5e-24 83.5 0.0 1.8e-23 82.4 0.0 1.5 1 0 0 1 1 1 1 Transglycosylase SLT domain LysM PF01476.20 AHV94821.1 - 2.4e-23 81.9 0.0 7.2e-14 51.6 0.0 2.8 2 0 0 2 2 2 2 LysM domain Mor PF08765.11 AHV94821.1 - 0.0086 16.1 0.0 0.16 11.9 0.1 2.7 2 0 0 2 2 2 1 Mor transcription activator family Sigma70_r4 PF04545.16 AHV94821.1 - 0.056 13.0 0.1 0.13 11.8 0.1 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 EPTP PF03736.17 AHV94821.1 - 0.16 12.0 0.0 0.45 10.6 0.0 1.7 1 0 0 1 1 1 0 EPTP domain S4_2 PF13275.6 AHV94822.1 - 3.2e-20 71.7 0.3 3.8e-20 71.5 0.3 1.0 1 0 0 1 1 1 1 S4 domain S4 PF01479.25 AHV94822.1 - 0.042 13.6 0.3 0.075 12.8 0.3 1.5 1 1 0 1 1 1 0 S4 domain T2SSF PF00482.23 AHV94824.1 - 6.9e-19 68.0 1.4 1.4e-18 67.0 1.4 1.5 1 0 0 1 1 1 1 Type II secretion system (T2SS), protein F Phage_holin_3_6 PF07332.11 AHV94824.1 - 7 6.7 10.9 6.1 6.9 5.0 2.4 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III DUF3141 PF11339.8 AHV94826.1 - 3.1e-129 432.1 0.0 3.8e-129 431.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3141) Ribosomal_L2 PF00181.23 AHV94826.1 - 0.1 12.5 0.0 0.37 10.8 0.0 1.9 2 0 0 2 2 2 0 Ribosomal Proteins L2, RNA binding domain HlyD_3 PF13437.6 AHV94827.1 - 8.7e-19 68.2 0.8 2.2e-15 57.3 0.0 3.6 3 1 1 4 4 4 3 HlyD family secretion protein Biotin_lipoyl_2 PF13533.6 AHV94827.1 - 1.7e-05 24.6 0.2 1.7e-05 24.6 0.2 3.0 3 1 0 3 3 3 1 Biotin-lipoyl like HlyD_D23 PF16576.5 AHV94827.1 - 2.2e-05 23.8 4.7 0.00049 19.4 3.5 2.8 2 1 0 2 2 2 1 Barrel-sandwich domain of CusB or HlyD membrane-fusion DUF3763 PF12592.8 AHV94828.1 - 0.0031 17.5 0.1 0.0046 17.0 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3763) Trp_oprn_chp PF09534.10 AHV94828.1 - 0.013 15.3 0.6 0.016 15.0 0.6 1.1 1 0 0 1 1 1 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) tRNA-synt_1e PF01406.19 AHV94829.1 - 7.2e-114 380.2 0.0 2.6e-113 378.4 0.0 1.8 1 1 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain DALR_2 PF09190.11 AHV94829.1 - 1.7e-15 57.2 0.5 4.5e-15 55.9 0.5 1.8 1 0 0 1 1 1 1 DALR domain tRNA-synt_1g PF09334.11 AHV94829.1 - 0.00025 19.9 1.0 0.0045 15.8 0.1 2.4 2 1 0 2 2 2 1 tRNA synthetases class I (M) tRNA-synt_1 PF00133.22 AHV94829.1 - 0.077 11.2 0.0 0.98 7.6 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetases class I (I, L, M and V) EamA PF00892.20 AHV94830.1 - 2e-19 70.1 29.6 4.9e-11 43.0 10.0 2.2 2 0 0 2 2 2 2 EamA-like transporter family Cyclase PF04199.13 AHV94831.1 - 2.5e-13 50.4 0.0 5.5e-13 49.3 0.0 1.6 1 1 0 1 1 1 1 Putative cyclase MarR PF01047.22 AHV94832.1 - 9.8e-10 38.2 0.0 2.8e-09 36.8 0.0 1.8 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.7 AHV94832.1 - 1.7e-07 31.0 1.2 2.7e-07 30.4 0.3 1.9 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.6 AHV94832.1 - 2.1e-07 30.4 0.3 0.00033 20.1 0.0 3.0 2 1 1 3 3 3 2 Winged helix-turn-helix DNA-binding TrmB PF01978.19 AHV94832.1 - 0.0054 16.6 0.0 0.0093 15.8 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB FtsK_gamma PF09397.10 AHV94832.1 - 0.012 15.4 0.0 0.029 14.1 0.0 1.6 1 0 0 1 1 1 0 Ftsk gamma domain HTH_AsnC-type PF13404.6 AHV94832.1 - 0.31 10.9 3.6 2 8.3 0.1 3.1 2 1 1 3 3 3 0 AsnC-type helix-turn-helix domain MFS_1 PF07690.16 AHV94833.1 - 1.5e-38 132.6 59.1 5.6e-35 120.9 45.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily AmiS_UreI PF02293.15 AHV94833.1 - 0.045 13.8 0.2 0.045 13.8 0.2 3.9 3 2 2 5 5 5 0 AmiS/UreI family transporter OATP PF03137.20 AHV94833.1 - 0.5 8.6 12.9 0.29 9.4 0.1 3.1 3 0 0 3 3 3 0 Organic Anion Transporter Polypeptide (OATP) family LysR_substrate PF03466.20 AHV94834.1 - 2.1e-37 128.6 3.1 3e-37 128.0 3.1 1.2 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 AHV94834.1 - 5e-19 68.0 0.9 5e-19 68.0 0.9 2.1 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family TPP_enzyme_N PF02776.18 AHV94834.1 - 0.058 13.0 0.1 0.093 12.3 0.1 1.3 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BPD_transp_2 PF02653.16 AHV94835.1 - 4.6e-29 101.4 41.5 4.6e-29 101.4 41.5 1.4 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component GCV_T PF01571.21 AHV94836.1 - 1.2e-26 93.7 0.1 1.3e-26 93.5 0.1 1.0 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain CoA_trans PF01144.23 AHV94837.1 - 5.9e-39 133.7 0.5 6.6e-39 133.5 0.5 1.0 1 0 0 1 1 1 1 Coenzyme A transferase AcetylCoA_hyd_C PF13336.6 AHV94837.1 - 0.0029 17.6 0.0 0.0038 17.2 0.0 1.2 1 0 0 1 1 1 1 Acetyl-CoA hydrolase/transferase C-terminal domain TctC PF03401.14 AHV94839.1 - 9.1e-101 336.5 0.0 1.1e-100 336.3 0.0 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor DUF4223 PF13978.6 AHV94842.1 - 0.12 12.4 0.1 0.2 11.6 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4223) Wzy_C PF04932.15 AHV94843.1 - 4.7e-19 68.5 0.7 3.1e-17 62.6 0.0 2.0 2 0 0 2 2 2 2 O-Antigen ligase DUF1761 PF08570.10 AHV94843.1 - 0.022 15.0 2.9 0.05 13.9 0.5 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1761) DUF423 PF04241.15 AHV94843.1 - 0.16 12.2 5.8 5.9 7.2 0.0 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF423) DUF2842 PF11003.8 AHV94843.1 - 0.82 10.0 5.1 1.2 9.4 0.0 3.1 3 1 1 4 4 4 0 Protein of unknown function (DUF2842) PALP PF00291.25 AHV94844.1 - 1.1e-67 228.5 6.2 1.3e-67 228.3 6.2 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme DUF3343 PF11823.8 AHV94844.1 - 0.11 11.9 0.0 0.24 10.9 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3343) FecCD PF01032.18 AHV94845.1 - 8.9e-25 87.3 18.1 1.9e-24 86.3 18.1 1.5 1 1 0 1 1 1 1 FecCD transport family MWFE PF15879.5 AHV94845.1 - 0.018 15.2 1.9 0.038 14.2 0.4 2.2 1 1 1 2 2 2 0 NADH-ubiquinone oxidoreductase MWFE subunit MMM1 PF10296.9 AHV94845.1 - 0.022 13.8 0.2 0.03 13.4 0.2 1.1 1 0 0 1 1 1 0 Maintenance of mitochondrial morphology protein 1 Pyr_redox_2 PF07992.14 AHV94846.1 - 4.2e-48 164.1 0.5 4.9e-48 163.9 0.5 1.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 AHV94846.1 - 1.4e-16 60.8 1.3 1.2e-15 57.8 0.2 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 AHV94846.1 - 3.3e-16 59.4 0.0 1.7e-13 50.5 0.0 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 AHV94846.1 - 1.5e-07 30.9 2.0 0.027 13.6 0.3 4.0 4 0 0 4 4 4 2 Glucose inhibited division protein A HI0933_like PF03486.14 AHV94846.1 - 5.3e-05 22.1 2.3 0.54 8.9 0.4 4.4 3 1 2 5 5 5 2 HI0933-like protein DAO PF01266.24 AHV94846.1 - 6.5e-05 22.7 1.3 2.2 7.8 0.0 3.4 4 0 0 4 4 4 3 FAD dependent oxidoreductase FAD_oxidored PF12831.7 AHV94846.1 - 8.6e-05 22.0 0.2 0.0028 17.1 0.0 2.4 3 0 0 3 3 3 1 FAD dependent oxidoreductase Thi4 PF01946.17 AHV94846.1 - 0.00027 20.3 0.3 0.22 10.7 0.1 2.9 3 0 0 3 3 3 2 Thi4 family NAD_binding_7 PF13241.6 AHV94846.1 - 0.0025 18.2 0.0 0.052 14.0 0.0 2.3 2 0 0 2 2 2 1 Putative NAD(P)-binding FAD_binding_2 PF00890.24 AHV94846.1 - 0.0034 16.5 10.4 0.0083 15.3 0.5 4.1 2 2 3 5 5 5 1 FAD binding domain AlaDh_PNT_C PF01262.21 AHV94846.1 - 0.0058 15.9 0.2 0.28 10.5 0.1 2.3 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Trp_halogenase PF04820.14 AHV94846.1 - 0.02 13.7 0.2 0.81 8.5 0.2 2.1 2 0 0 2 2 2 0 Tryptophan halogenase Shikimate_DH PF01488.20 AHV94846.1 - 0.035 14.2 0.0 0.86 9.7 0.0 2.7 3 0 0 3 3 3 0 Shikimate / quinate 5-dehydrogenase FAD_binding_3 PF01494.19 AHV94846.1 - 0.044 13.0 0.8 1.6 7.9 0.3 2.5 2 1 0 2 2 2 0 FAD binding domain K_oxygenase PF13434.6 AHV94846.1 - 0.1 11.7 0.0 0.6 9.2 0.0 2.1 1 1 1 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_8 PF13450.6 AHV94846.1 - 0.88 9.8 0.1 0.88 9.8 0.1 2.8 4 0 0 4 4 3 0 NAD(P)-binding Rossmann-like domain ADK PF00406.22 AHV94847.1 - 1.2e-57 194.2 0.0 1.5e-57 193.9 0.0 1.1 1 0 0 1 1 1 1 Adenylate kinase AAA_17 PF13207.6 AHV94847.1 - 4.7e-23 82.1 0.1 9e-23 81.2 0.0 1.4 2 0 0 2 2 2 1 AAA domain ADK_lid PF05191.14 AHV94847.1 - 3e-16 59.1 0.0 5.6e-16 58.2 0.0 1.5 1 0 0 1 1 1 1 Adenylate kinase, active site lid Hydin_ADK PF17213.3 AHV94847.1 - 0.00036 20.9 0.7 0.21 11.9 0.1 2.6 2 1 1 3 3 3 2 Hydin Adenylate kinase-like domain Cytidylate_kin PF02224.18 AHV94847.1 - 0.038 13.7 0.1 0.064 13.0 0.1 1.3 1 0 0 1 1 1 0 Cytidylate kinase AAA_33 PF13671.6 AHV94847.1 - 0.084 13.0 0.2 0.52 10.5 0.0 2.4 2 1 0 2 2 2 0 AAA domain DUF1328 PF07043.13 AHV94848.1 - 2.9e-15 56.2 25.9 3.6e-15 55.9 25.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1328) Bacteriocin_IId PF09221.10 AHV94848.1 - 0.059 13.5 9.7 0.077 13.2 9.7 1.3 1 1 0 1 1 1 0 Bacteriocin class IId cyclical uberolysin-like Fungus-induced PF10917.8 AHV94848.1 - 0.35 11.2 8.3 0.54 10.6 2.8 2.1 2 0 0 2 2 2 0 Fungus-induced protein OAD_gamma PF04277.13 AHV94848.1 - 3.1 8.5 8.1 4.8 7.9 1.7 2.1 2 0 0 2 2 2 0 Oxaloacetate decarboxylase, gamma chain Phage_holin_3_6 PF07332.11 AHV94848.1 - 7.7 6.6 14.6 11 6.1 14.6 1.3 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III AMP-binding PF00501.28 AHV94849.1 - 1.3e-72 244.7 0.0 1.5e-72 244.5 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 AHV94849.1 - 4.9e-23 81.9 0.4 1.3e-22 80.6 0.4 1.8 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Pirin_C PF05726.13 AHV94849.1 - 0.14 12.5 0.0 0.53 10.7 0.0 1.8 1 1 0 1 1 1 0 Pirin C-terminal cupin domain HD_4 PF13328.6 AHV94850.1 - 1.2e-50 171.3 2.4 1.2e-50 171.3 2.4 1.8 2 0 0 2 2 2 1 HD domain RelA_SpoT PF04607.17 AHV94850.1 - 9.8e-31 106.5 0.0 2.5e-30 105.1 0.0 1.7 1 0 0 1 1 1 1 Region found in RelA / SpoT proteins TGS PF02824.21 AHV94850.1 - 9.6e-22 76.8 0.0 1.9e-21 75.8 0.0 1.5 1 0 0 1 1 1 1 TGS domain ACT_4 PF13291.6 AHV94850.1 - 6.2e-16 58.8 4.5 1.5e-15 57.6 4.5 1.7 1 0 0 1 1 1 1 ACT domain HD PF01966.22 AHV94850.1 - 2.9e-09 37.2 0.3 7.3e-09 35.9 0.3 1.8 1 0 0 1 1 1 1 HD domain ThiS PF02597.20 AHV94850.1 - 0.0012 19.4 0.0 0.0067 17.0 0.0 2.3 2 0 0 2 2 2 1 ThiS family ACT PF01842.25 AHV94850.1 - 0.0015 18.2 1.1 0.0035 17.1 1.1 1.7 1 0 0 1 1 1 1 ACT domain UPF0176_N PF17773.1 AHV94852.1 - 1.3e-24 86.3 0.0 2.3e-24 85.6 0.0 1.4 1 0 0 1 1 1 1 UPF0176 acylphosphatase like domain Rhodanese PF00581.20 AHV94852.1 - 5.3e-05 23.7 0.0 8.1e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 Rhodanese-like domain T2SSE PF00437.20 AHV94853.1 - 1.4e-13 50.5 0.2 1.7e-12 47.0 0.1 2.0 1 1 1 2 2 2 1 Type II/IV secretion system protein RPN1_C PF18051.1 AHV94853.1 - 0.12 12.4 0.0 0.28 11.3 0.0 1.5 1 0 0 1 1 1 0 26S proteasome non-ATPase regulatory subunit RPN1 C-terminal AidB_N PF18158.1 AHV94853.1 - 0.13 12.2 0.0 0.2 11.6 0.0 1.3 1 0 0 1 1 1 0 Adaptive response protein AidB N-terminal domain Corona_NS4 PF03905.13 AHV94853.1 - 0.13 12.3 0.1 0.76 9.8 0.2 2.2 3 0 0 3 3 3 0 Coronavirus non-structural protein NS4 TctB PF07331.11 AHV94854.1 - 3.6e-11 43.5 20.4 4.4e-11 43.2 20.4 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctB family DUF444 PF04285.12 AHV94855.1 - 1.1e-166 555.1 0.0 1.3e-166 554.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF444) VWA_2 PF13519.6 AHV94855.1 - 0.0069 17.0 0.1 0.17 12.5 0.0 2.8 2 1 0 2 2 2 1 von Willebrand factor type A domain OmpH PF03938.14 AHV94856.1 - 6.6e-31 107.5 5.2 7.9e-31 107.2 5.2 1.1 1 0 0 1 1 1 1 Outer membrane protein (OmpH-like) DUF3552 PF12072.8 AHV94856.1 - 0.00049 19.6 7.0 0.00066 19.2 7.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF3552) BshC PF10079.9 AHV94856.1 - 0.018 13.8 1.0 0.022 13.5 1.0 1.1 1 0 0 1 1 1 0 Bacillithiol biosynthesis BshC Usp PF00582.26 AHV94856.1 - 0.11 13.0 0.7 0.37 11.3 0.7 1.9 1 1 0 1 1 1 0 Universal stress protein family DUF4200 PF13863.6 AHV94856.1 - 0.15 12.5 12.0 0.37 11.2 0.3 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF4200) Mur_ligase_M PF08245.12 AHV94857.1 - 2.6e-12 47.2 0.1 8.8e-12 45.4 0.1 2.0 1 1 0 1 1 1 1 Mur ligase middle domain Mur_ligase_C PF02875.21 AHV94857.1 - 0.00011 22.4 0.0 0.00032 20.9 0.0 1.8 1 0 0 1 1 1 1 Mur ligase family, glutamate ligase domain rve PF00665.26 AHV94858.1 - 4.1e-25 88.3 0.0 5.7e-25 87.8 0.0 1.2 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.6 AHV94858.1 - 0.00018 21.2 0.0 0.00083 19.1 0.0 2.1 2 1 0 2 2 2 1 Integrase core domain PmoA PF14100.6 AHV94858.1 - 0.042 13.4 0.1 0.095 12.2 0.1 1.5 1 0 0 1 1 1 0 Methane oxygenase PmoA Peptidase_M50 PF02163.22 AHV94859.1 - 3.7e-24 85.4 0.0 4.1e-24 85.2 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M50 DNA_topoisoIV PF00521.20 AHV94860.1 - 2.7e-145 484.5 0.0 3.4e-145 484.2 0.0 1.1 1 0 0 1 1 1 1 DNA gyrase/topoisomerase IV, subunit A DNA_gyraseA_C PF03989.13 AHV94860.1 - 2.8e-76 250.8 13.7 8.3e-13 47.6 0.0 6.9 7 0 0 7 7 7 6 DNA gyrase C-terminal domain, beta-propeller AF0941-like PF14591.6 AHV94860.1 - 0.38 11.3 2.8 4.8 7.8 0.2 3.0 3 0 0 3 3 3 0 AF0941-like GST_C PF00043.25 AHV94861.1 - 3.1e-13 49.7 0.1 5.2e-13 49.0 0.1 1.3 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C_2 PF13410.6 AHV94861.1 - 9.1e-10 38.4 2.2 2.6e-09 37.0 2.0 1.9 1 1 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_N_2 PF13409.6 AHV94861.1 - 1.1e-09 38.5 0.0 2.3e-09 37.4 0.0 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_3 PF13417.6 AHV94861.1 - 2.8e-09 37.2 0.0 7.5e-09 35.9 0.0 1.7 2 0 0 2 2 2 1 Glutathione S-transferase, N-terminal domain GST_N PF02798.20 AHV94861.1 - 6e-09 36.1 0.0 1.1e-08 35.2 0.0 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_C_3 PF14497.6 AHV94861.1 - 9.3e-09 35.4 0.0 2.1e-08 34.2 0.0 1.6 2 0 0 2 2 2 1 Glutathione S-transferase, C-terminal domain Tom37 PF10568.9 AHV94861.1 - 0.018 15.3 0.1 0.045 14.1 0.1 1.6 1 1 0 1 1 1 0 Outer mitochondrial membrane transport complex protein T2SSM PF04612.12 AHV94861.1 - 0.03 14.4 1.1 0.17 12.0 0.9 2.2 1 1 1 2 2 2 0 Type II secretion system (T2SS), protein M GST_N_4 PF17172.4 AHV94861.1 - 0.16 12.8 0.0 1.2 9.9 0.0 2.3 1 1 2 3 3 3 0 Glutathione S-transferase N-terminal domain Oxidored_q3 PF00499.20 AHV94862.1 - 2.9e-34 117.9 20.5 3.4e-34 117.6 20.5 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 MIG-14_Wnt-bd PF06664.12 AHV94862.1 - 0.0036 16.6 2.4 0.0045 16.3 2.4 1.1 1 0 0 1 1 1 1 Wnt-binding factor required for Wnt secretion T4SS_CagC PF16943.5 AHV94862.1 - 0.0056 16.8 1.1 0.12 12.5 0.3 2.4 2 0 0 2 2 2 1 Cag pathogenicity island, type IV secretory system FAM176 PF14851.6 AHV94862.1 - 5.4 6.7 0.0 5.4 6.7 0.0 2.6 2 1 1 3 3 3 0 FAM176 family Thioredoxin PF00085.20 AHV94863.1 - 6e-25 87.2 0.0 1.3e-24 86.1 0.0 1.5 1 1 1 2 2 2 1 Thioredoxin Thioredoxin_2 PF13098.6 AHV94863.1 - 8.1e-07 29.5 0.0 1.1e-05 25.8 0.0 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.6 AHV94863.1 - 5.4e-06 26.6 0.0 0.00073 19.8 0.0 2.4 2 1 1 3 3 3 2 Thioredoxin-like Thioredoxin_9 PF14595.6 AHV94863.1 - 7.1e-05 22.6 0.0 8.2e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin OST3_OST6 PF04756.13 AHV94863.1 - 0.00045 19.7 0.0 0.00053 19.4 0.0 1.2 1 0 0 1 1 1 1 OST3 / OST6 family, transporter family Redoxin PF08534.10 AHV94863.1 - 0.0051 16.5 0.0 0.012 15.3 0.0 1.6 1 1 0 1 1 1 1 Redoxin AhpC-TSA PF00578.21 AHV94863.1 - 0.013 15.4 0.0 0.026 14.4 0.0 1.5 1 1 0 1 1 1 0 AhpC/TSA family Thioredoxin_3 PF13192.6 AHV94863.1 - 0.033 14.2 0.0 0.056 13.5 0.0 1.5 1 1 0 1 1 1 0 Thioredoxin domain Thioredoxin_7 PF13899.6 AHV94863.1 - 0.061 13.5 0.2 0.12 12.5 0.0 1.7 2 0 0 2 2 2 0 Thioredoxin-like TraF PF13728.6 AHV94863.1 - 0.077 12.8 0.0 0.15 11.8 0.0 1.5 1 1 1 2 2 2 0 F plasmid transfer operon protein Thioredoxin_6 PF13848.6 AHV94863.1 - 0.12 12.3 0.0 0.13 12.2 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin-like domain Apo-CIII PF05778.12 AHV94863.1 - 0.17 11.6 0.1 0.48 10.1 0.1 1.7 2 0 0 2 2 2 0 Apolipoprotein CIII (Apo-CIII) TetR_C_7 PF14246.6 AHV94864.1 - 1.8e-15 57.0 1.1 3.2e-15 56.2 1.1 1.3 1 0 0 1 1 1 1 AefR-like transcriptional repressor, C-terminal domain TetR_N PF00440.23 AHV94864.1 - 5.8e-12 45.2 0.0 1.3e-11 44.1 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_11 PF16859.5 AHV94864.1 - 3e-08 34.0 4.5 3e-08 34.0 4.5 1.8 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain HTH_Tnp_1_2 PF13022.6 AHV94864.1 - 0.0022 18.1 0.0 0.0037 17.4 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix of insertion element transposase HSP33 PF01430.19 AHV94865.1 - 1.1e-82 277.4 0.0 1.3e-82 277.2 0.0 1.0 1 0 0 1 1 1 1 Hsp33 protein Sigma70_r2 PF04542.14 AHV94866.1 - 4.4e-19 68.0 0.7 1e-18 66.8 0.0 2.0 2 0 0 2 2 2 1 Sigma-70 region 2 Sigma70_r4 PF04545.16 AHV94866.1 - 6e-15 54.5 5.0 1.1e-14 53.6 0.2 2.7 3 0 0 3 3 3 1 Sigma-70, region 4 Sigma70_r1_2 PF00140.20 AHV94866.1 - 3.8e-06 26.8 0.0 1.2e-05 25.2 0.0 1.9 1 0 0 1 1 1 1 Sigma-70 factor, region 1.2 HTH_AsnC-type PF13404.6 AHV94866.1 - 0.0057 16.5 2.3 0.023 14.5 0.2 2.9 3 0 0 3 3 3 1 AsnC-type helix-turn-helix domain HTH_23 PF13384.6 AHV94866.1 - 0.049 13.4 0.6 0.65 9.9 0.1 2.8 2 1 1 3 3 3 0 Homeodomain-like domain HTH_31 PF13560.6 AHV94866.1 - 0.058 13.8 3.0 0.31 11.4 1.1 2.7 2 0 0 2 2 2 0 Helix-turn-helix domain IF2_N PF04760.15 AHV94866.1 - 0.064 13.1 0.0 8.8 6.2 0.0 2.6 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region Sigma70_r3 PF04539.16 AHV94866.1 - 0.11 12.6 0.9 5.4 7.2 0.0 2.6 2 0 0 2 2 2 0 Sigma-70 region 3 TctC PF03401.14 AHV94867.1 - 6.5e-70 235.3 0.0 7.5e-70 235.1 0.0 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor PAC4 PF16093.5 AHV94867.1 - 0.034 14.3 0.0 0.094 12.9 0.0 1.7 1 0 0 1 1 1 0 Proteasome assembly chaperone 4 SBP_bac_3 PF00497.20 AHV94867.1 - 0.14 11.6 0.0 0.24 10.8 0.0 1.4 1 0 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 DUF3894 PF13033.6 AHV94867.1 - 0.17 12.0 0.0 0.34 11.0 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3894) rve_3 PF13683.6 AHV94868.1 - 8.3e-32 108.8 0.1 4.5e-31 106.4 0.0 2.2 2 0 0 2 2 2 1 Integrase core domain rve PF00665.26 AHV94868.1 - 4.2e-25 88.2 0.0 1.1e-23 83.7 0.0 2.2 2 0 0 2 2 2 1 Integrase core domain HTH_21 PF13276.6 AHV94868.1 - 1.8e-11 44.0 8.6 3.6e-11 43.0 8.6 1.5 1 0 0 1 1 1 1 HTH-like domain rve_2 PF13333.6 AHV94868.1 - 5.8e-07 29.6 0.0 1.3e-06 28.5 0.0 1.6 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AHV94868.1 - 0.00041 20.6 0.0 0.00091 19.5 0.0 1.6 1 1 1 2 2 2 1 DDE domain Rhomboid_SP PF12595.8 AHV94868.1 - 0.0081 15.6 0.3 2.2 7.6 0.0 2.3 1 1 0 2 2 2 2 Rhomboid serine protease DUF1780 PF08682.10 AHV94868.1 - 0.13 11.9 1.0 1.6 8.3 0.3 2.2 2 0 0 2 2 2 0 Putative endonuclease, protein of unknown function (DUF1780) BPD_transp_2 PF02653.16 AHV94869.1 - 3e-33 115.1 35.8 4.4e-33 114.6 35.8 1.3 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component K1 PF02960.14 AHV94869.1 - 0.2 11.8 1.7 7.3 6.7 0.2 2.5 2 0 0 2 2 2 0 K1 glycoprotein Pam17 PF08566.10 AHV94869.1 - 5.8 6.7 5.3 0.67 9.8 0.7 1.7 2 0 0 2 2 2 0 Mitochondrial import protein Pam17 DUF525 PF04379.14 AHV94870.1 - 1.5e-37 127.7 0.0 1.7e-37 127.5 0.0 1.1 1 0 0 1 1 1 1 ApaG domain DAO PF01266.24 AHV94871.1 - 1.6e-30 106.9 8.4 7.6e-30 104.7 8.4 1.8 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 AHV94871.1 - 1.7e-06 27.4 2.3 2.1e-06 27.1 2.3 1.2 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.6 AHV94871.1 - 0.00011 22.3 1.6 0.00035 20.8 1.2 2.1 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 AHV94871.1 - 0.00032 19.9 1.5 0.00043 19.5 1.5 1.1 1 0 0 1 1 1 1 Glucose inhibited division protein A Pyr_redox PF00070.27 AHV94871.1 - 0.00036 21.0 0.4 0.011 16.3 0.4 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 AHV94871.1 - 0.00037 20.0 6.4 0.00065 19.2 2.9 1.8 1 1 1 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 AHV94871.1 - 0.0011 18.3 0.2 0.0037 16.5 0.2 1.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 AHV94871.1 - 0.0033 17.3 0.5 0.005 16.8 0.5 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HI0933_like PF03486.14 AHV94871.1 - 0.006 15.3 0.7 0.0083 14.9 0.7 1.2 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox_3 PF13738.6 AHV94871.1 - 0.039 13.2 0.3 0.069 12.4 0.3 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 AHV94871.1 - 0.041 13.1 0.4 0.062 12.5 0.4 1.2 1 0 0 1 1 1 0 Thi4 family AlaDh_PNT_C PF01262.21 AHV94871.1 - 0.049 12.9 0.6 0.071 12.4 0.6 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_3 PF01494.19 AHV94871.1 - 0.05 12.8 0.3 0.08 12.2 0.3 1.3 1 0 0 1 1 1 0 FAD binding domain Lycopene_cycl PF05834.12 AHV94871.1 - 0.091 11.8 0.1 0.12 11.4 0.1 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein Aldo_ket_red PF00248.21 AHV94872.1 - 1.3e-79 267.4 0.0 1.5e-79 267.3 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Exotox-A_target PF09102.10 AHV94872.1 - 0.027 14.4 0.1 0.044 13.8 0.1 1.4 1 0 0 1 1 1 0 Exotoxin A, targeting FCD PF07729.12 AHV94873.1 - 4.2e-27 95.1 11.9 4.2e-27 95.1 11.9 1.7 2 0 0 2 2 2 1 FCD domain GntR PF00392.21 AHV94873.1 - 1.2e-15 56.9 0.2 2.7e-15 55.8 0.2 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_Crp_2 PF13545.6 AHV94873.1 - 0.0046 16.9 0.1 0.013 15.4 0.1 1.8 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_29 PF13551.6 AHV94873.1 - 0.055 13.5 0.0 0.16 12.0 0.0 1.8 1 0 0 1 1 1 0 Winged helix-turn helix Fe_dep_repress PF01325.19 AHV94873.1 - 0.072 13.3 0.0 0.17 12.1 0.0 1.7 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.19 AHV94873.1 - 0.091 12.7 0.0 0.2 11.6 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 AHV94873.1 - 0.14 11.8 0.6 0.31 10.6 0.1 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Plug PF07715.15 AHV94874.1 - 2.3e-15 57.1 1.3 2.3e-15 57.1 1.3 1.5 2 0 0 2 2 2 1 TonB-dependent Receptor Plug Domain STN PF07660.14 AHV94874.1 - 1.4e-11 44.0 0.0 2.7e-10 39.9 0.0 2.4 1 1 1 2 2 2 2 Secretin and TonB N terminus short domain Rieske PF00355.26 AHV94875.1 - 1.3e-13 50.7 0.1 2e-12 46.9 0.1 2.1 1 1 0 1 1 1 1 Rieske [2Fe-2S] domain UCR_Fe-S_N PF10399.9 AHV94875.1 - 6.6e-05 22.2 2.3 0.00012 21.3 2.3 1.4 1 0 0 1 1 1 1 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Rieske_2 PF13806.6 AHV94875.1 - 0.041 13.8 0.0 0.65 10.0 0.0 2.1 2 0 0 2 2 2 0 Rieske-like [2Fe-2S] domain Sigma70_r2 PF04542.14 AHV94876.1 - 6e-19 67.6 1.6 1.4e-18 66.4 1.6 1.6 1 0 0 1 1 1 1 Sigma-70 region 2 Sigma70_r4_2 PF08281.12 AHV94876.1 - 2.5e-18 65.5 0.1 7.3e-18 64.0 0.1 1.9 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 AHV94876.1 - 5.2e-11 41.9 0.1 1.2e-10 40.7 0.1 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_ECF PF07638.11 AHV94876.1 - 7.3e-07 29.2 0.4 1.6e-06 28.2 0.4 1.5 1 1 0 1 1 1 1 ECF sigma factor HTH_16 PF12645.7 AHV94876.1 - 0.0012 18.9 0.2 0.0024 17.9 0.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 AHV94876.1 - 0.0023 17.7 1.9 0.0053 16.5 0.0 2.5 3 0 0 3 3 3 1 Homeodomain-like domain Phage_antitermQ PF06530.12 AHV94876.1 - 0.0049 16.8 0.1 0.21 11.5 0.0 2.2 2 0 0 2 2 2 1 Phage antitermination protein Q HTH_20 PF12840.7 AHV94876.1 - 0.009 16.0 0.1 1.6 8.8 0.0 2.8 2 1 0 2 2 2 1 Helix-turn-helix domain PBECR2 PF18810.1 AHV94876.1 - 0.076 13.3 0.1 0.12 12.6 0.1 1.4 1 0 0 1 1 1 0 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2 GerE PF00196.19 AHV94876.1 - 0.099 12.2 0.0 0.31 10.6 0.0 1.9 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family DUF2764 PF10962.8 AHV94876.1 - 0.11 11.9 0.0 0.15 11.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2764) TnsD PF15978.5 AHV94876.1 - 0.18 10.8 0.0 1.1 8.2 0.0 1.9 2 0 0 2 2 2 0 Tn7-like transposition protein D adh_short_C2 PF13561.6 AHV94877.1 - 1.3e-43 149.2 0.5 1.5e-43 149.1 0.5 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase Enoyl_reductase PF12241.8 AHV94877.1 - 0.16 11.3 0.1 0.21 10.9 0.1 1.1 1 0 0 1 1 1 0 Trans-2-enoyl-CoA reductase catalytic region rve PF00665.26 AHV94878.1 - 2.9e-32 111.3 0.7 4.3e-32 110.8 0.1 1.6 2 0 0 2 2 1 1 Integrase core domain LZ_Tnp_IS481 PF13011.6 AHV94878.1 - 7.7e-22 77.6 2.7 1.1e-19 70.7 0.4 2.6 1 1 1 2 2 2 1 leucine-zipper of insertion element IS481 rve_3 PF13683.6 AHV94878.1 - 5e-19 67.8 2.7 1.2e-18 66.6 2.7 1.7 1 0 0 1 1 1 1 Integrase core domain HTH_23 PF13384.6 AHV94878.1 - 6.1e-17 60.9 4.4 1.2e-07 31.3 0.1 2.7 2 0 0 2 2 2 2 Homeodomain-like domain HTH_28 PF13518.6 AHV94878.1 - 1.5e-15 57.1 6.5 5.9e-11 42.3 0.1 3.4 4 0 0 4 4 3 2 Helix-turn-helix domain HTH_29 PF13551.6 AHV94878.1 - 9.8e-12 44.7 0.6 2.6e-06 27.4 0.0 2.6 2 0 0 2 2 2 2 Winged helix-turn helix HTH_32 PF13565.6 AHV94878.1 - 9.4e-11 42.2 0.7 9.4e-11 42.2 0.7 2.4 2 1 0 2 2 2 1 Homeodomain-like domain HTH_38 PF13936.6 AHV94878.1 - 1.5e-06 27.9 0.6 5.1e-06 26.1 0.5 2.1 2 0 0 2 2 1 1 Helix-turn-helix domain MarR_2 PF12802.7 AHV94878.1 - 8e-06 25.6 3.1 9.5e-05 22.2 1.2 2.6 2 0 0 2 2 2 1 MarR family HTH_31 PF13560.6 AHV94878.1 - 1.4e-05 25.4 1.7 0.00059 20.1 0.4 3.2 3 0 0 3 3 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 AHV94878.1 - 3e-05 23.6 0.1 0.0064 16.1 0.3 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 AHV94878.1 - 4.6e-05 22.9 0.1 0.00056 19.4 0.2 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 YdaS_antitoxin PF15943.5 AHV94878.1 - 0.00022 21.0 0.2 0.24 11.3 0.0 2.8 2 0 0 2 2 2 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_Tnp_ISL3 PF13542.6 AHV94878.1 - 0.00023 20.5 8.5 0.002 17.5 0.6 3.9 4 0 0 4 4 3 1 Helix-turn-helix domain of transposase family ISL3 HTH_24 PF13412.6 AHV94878.1 - 0.00028 20.4 0.2 0.0021 17.6 0.3 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_3 PF01381.22 AHV94878.1 - 0.00032 20.7 0.7 0.013 15.5 0.3 2.5 2 0 0 2 2 2 1 Helix-turn-helix HTH_Crp_2 PF13545.6 AHV94878.1 - 0.0004 20.3 0.3 0.0027 17.6 0.2 2.3 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain Trp_repressor PF01371.19 AHV94878.1 - 0.00081 19.5 0.2 0.006 16.7 0.1 2.2 2 0 0 2 2 2 1 Trp repressor protein CENP-B_N PF04218.13 AHV94878.1 - 0.0016 18.0 0.0 1.6 8.5 0.1 2.3 2 0 0 2 2 2 1 CENP-B N-terminal DNA-binding domain LacI PF00356.21 AHV94878.1 - 0.0017 18.1 1.8 0.0046 16.7 0.7 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family Fe_dep_repress PF01325.19 AHV94878.1 - 0.002 18.3 0.0 0.034 14.4 0.1 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.20 AHV94878.1 - 0.0023 17.8 0.0 0.93 9.4 0.0 2.5 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 AHV94878.1 - 0.0025 17.6 1.3 0.035 13.9 0.7 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_psq PF05225.16 AHV94878.1 - 0.0025 17.5 0.7 2.3 8.0 0.4 2.9 3 0 0 3 3 3 1 helix-turn-helix, Psq domain HTH_11 PF08279.12 AHV94878.1 - 0.0026 17.7 0.4 0.015 15.3 0.5 2.2 2 0 0 2 2 2 1 HTH domain SpoIIID PF12116.8 AHV94878.1 - 0.0026 17.8 0.0 1.1 9.4 0.0 2.4 2 0 0 2 2 2 1 Stage III sporulation protein D HTH_AsnC-type PF13404.6 AHV94878.1 - 0.0036 17.1 2.7 0.045 13.6 1.1 2.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain RepB PF07506.11 AHV94878.1 - 0.0042 17.2 0.1 0.55 10.3 0.1 2.3 1 1 1 2 2 2 1 RepB plasmid partitioning protein HTH_17 PF12728.7 AHV94878.1 - 0.0043 17.2 0.7 6.1 7.1 0.0 3.3 3 1 0 3 3 3 0 Helix-turn-helix domain HTH_Tnp_1 PF01527.20 AHV94878.1 - 0.005 17.1 0.5 0.11 12.8 0.0 2.7 1 1 1 2 2 2 1 Transposase GntR PF00392.21 AHV94878.1 - 0.0053 16.4 0.8 0.5 10.1 0.3 2.5 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_10 PF04967.12 AHV94878.1 - 0.0077 16.0 0.1 0.049 13.4 0.2 2.2 2 0 0 2 2 2 1 HTH DNA binding domain HTH_35 PF13693.6 AHV94878.1 - 0.0093 16.0 1.5 0.073 13.1 0.6 2.7 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding UPF0175 PF03683.13 AHV94878.1 - 0.014 15.1 0.4 0.1 12.3 0.1 2.4 2 1 0 2 2 2 0 Uncharacterised protein family (UPF0175) HTH_30 PF13556.6 AHV94878.1 - 0.015 15.1 0.1 2 8.3 0.0 2.6 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain HTH_37 PF13744.6 AHV94878.1 - 0.016 15.2 0.1 0.13 12.3 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Tnp_4 PF13613.6 AHV94878.1 - 0.016 14.9 0.1 0.067 12.9 0.0 2.0 2 0 0 2 2 1 0 Helix-turn-helix of DDE superfamily endonuclease HTH_36 PF13730.6 AHV94878.1 - 0.02 14.8 0.1 0.58 10.2 0.0 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain KORA PF16509.5 AHV94878.1 - 0.034 14.4 0.1 3.6 8.0 0.0 3.0 3 0 0 3 3 3 0 TrfB plasmid transcriptional repressor MarR PF01047.22 AHV94878.1 - 0.045 13.7 0.1 0.14 12.1 0.1 1.8 2 0 0 2 2 1 0 MarR family DDE_Tnp_IS240 PF13610.6 AHV94878.1 - 0.048 13.9 0.1 0.071 13.3 0.1 1.3 1 0 0 1 1 1 0 DDE domain Crp PF00325.20 AHV94878.1 - 0.05 13.3 3.2 0.062 13.0 0.5 2.5 3 0 0 3 3 3 0 Bacterial regulatory proteins, crp family P22_Cro PF14549.6 AHV94878.1 - 0.051 13.4 1.6 9.6 6.1 0.1 2.5 2 0 0 2 2 2 0 DNA-binding transcriptional regulator Cro DUF746 PF05344.11 AHV94878.1 - 0.085 12.7 0.1 0.98 9.3 0.0 2.3 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) HTH_1 PF00126.27 AHV94878.1 - 0.1 12.5 2.8 4.7 7.2 0.5 2.6 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_26 PF13443.6 AHV94878.1 - 0.17 12.3 0.0 3.6 8.1 0.1 2.8 3 0 0 3 3 3 0 Cro/C1-type HTH DNA-binding domain HTH_8 PF02954.19 AHV94878.1 - 0.19 11.5 0.9 14 5.5 0.7 2.7 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family HTH_Tnp_Tc3_2 PF01498.18 AHV94878.1 - 0.27 11.5 2.6 0.47 10.7 0.1 2.6 3 0 0 3 3 1 0 Transposase HTH_33 PF13592.6 AHV94878.1 - 0.56 9.9 3.1 2.9 7.6 0.1 3.4 4 0 0 4 4 2 0 Winged helix-turn helix MerR PF00376.23 AHV94878.1 - 0.72 9.7 6.8 3.2 7.6 0.0 3.6 4 0 0 4 4 2 0 MerR family regulatory protein Peptidase_S58 PF03576.14 AHV94879.1 - 6.2e-108 360.8 1.9 7.1e-108 360.7 1.9 1.0 1 0 0 1 1 1 1 Peptidase family S58 Peptidase_M20 PF01546.28 AHV94880.1 - 1.1e-35 123.3 0.5 1.4e-35 122.9 0.5 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 AHV94880.1 - 1.6e-08 34.4 0.1 3.8e-08 33.2 0.1 1.6 1 0 0 1 1 1 1 Peptidase dimerisation domain TerC PF03741.16 AHV94881.1 - 7.1e-25 87.7 9.4 7.1e-25 87.7 9.4 2.4 2 1 0 2 2 2 1 Integral membrane protein TerC family DUF2681 PF10883.8 AHV94881.1 - 0.3 11.5 4.3 51 4.4 0.0 4.0 4 0 0 4 4 4 0 Protein of unknown function (DUF2681) SBP_bac_3 PF00497.20 AHV94882.1 - 5.2e-35 120.9 0.0 7.1e-35 120.5 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 NMT1 PF09084.11 AHV94882.1 - 8.1e-05 22.7 0.1 0.00033 20.7 0.0 1.8 1 1 1 2 2 2 1 NMT1/THI5 like NMT1_3 PF16868.5 AHV94882.1 - 0.02 14.3 0.0 0.71 9.2 0.0 2.3 1 1 1 2 2 2 0 NMT1-like family VitK2_biosynth PF02621.14 AHV94882.1 - 0.15 11.5 0.0 0.25 10.8 0.0 1.3 1 0 0 1 1 1 0 Menaquinone biosynthesis RsmJ PF04378.13 AHV94883.1 - 1.5e-77 260.1 0.0 1.8e-77 259.9 0.0 1.0 1 0 0 1 1 1 1 Ribosomal RNA large subunit methyltransferase D, RlmJ Cons_hypoth95 PF03602.15 AHV94883.1 - 0.0043 16.7 0.0 0.013 15.2 0.0 1.7 3 0 0 3 3 3 1 Conserved hypothetical protein 95 Cyt_bd_oxida_II PF02322.15 AHV94884.1 - 2.7e-101 338.9 40.5 3.2e-101 338.7 40.5 1.0 1 0 0 1 1 1 1 Cytochrome bd terminal oxidase subunit II Pox_A14 PF05767.12 AHV94884.1 - 2.3 8.4 8.1 2.3 8.5 2.9 2.7 2 0 0 2 2 2 0 Poxvirus virion envelope protein A14 NUDIX PF00293.28 AHV94885.1 - 1.1e-16 61.0 0.0 1.6e-16 60.5 0.0 1.2 1 0 0 1 1 1 1 NUDIX domain FdhD-NarQ PF02634.15 AHV94886.1 - 8.8e-75 251.4 0.9 9.7e-75 251.3 0.9 1.0 1 0 0 1 1 1 1 FdhD/NarQ family MMR_HSR1 PF01926.23 AHV94887.1 - 2.4e-15 56.6 0.0 3.4e-15 56.1 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase Dynamin_N PF00350.23 AHV94887.1 - 0.0094 16.0 0.0 2.3 8.3 0.0 2.1 2 0 0 2 2 2 2 Dynamin family RsgA_GTPase PF03193.16 AHV94887.1 - 0.051 13.5 0.0 1.3 8.9 0.0 2.2 2 0 0 2 2 2 0 RsgA GTPase AIG1 PF04548.16 AHV94887.1 - 0.19 11.0 0.0 0.24 10.7 0.0 1.3 1 1 0 1 1 1 0 AIG1 family SDF PF00375.18 AHV94888.1 - 1.3e-37 129.8 11.8 1.4e-37 129.6 11.8 1.0 1 0 0 1 1 1 1 Sodium:dicarboxylate symporter family DUF1385 PF07136.11 AHV94888.1 - 0.02 14.2 2.1 0.025 13.9 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1385) MARVEL PF01284.23 AHV94888.1 - 0.077 13.0 0.8 0.077 13.0 0.8 2.6 3 0 0 3 3 3 0 Membrane-associating domain SPC12 PF06645.13 AHV94888.1 - 2.5 8.3 11.0 0.94 9.6 0.7 3.3 3 0 0 3 3 3 0 Microsomal signal peptidase 12 kDa subunit (SPC12) DUF2157 PF09925.9 AHV94888.1 - 3.9 7.2 9.6 2.8 7.7 3.6 2.7 2 1 0 2 2 2 0 Predicted membrane protein (DUF2157) MinC_C PF03775.16 AHV94889.1 - 1.9e-32 111.2 0.5 3.8e-32 110.3 0.1 1.7 2 0 0 2 2 2 1 Septum formation inhibitor MinC, C-terminal domain MinC_N PF05209.13 AHV94889.1 - 1.3e-16 60.4 0.0 2e-16 59.8 0.0 1.4 1 0 0 1 1 1 1 Septum formation inhibitor MinC, N-terminal domain 5-FTHF_cyc-lig PF01812.20 AHV94890.1 - 2.7e-23 82.8 0.0 3.3e-23 82.5 0.0 1.0 1 0 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family rve_3 PF13683.6 AHV94891.1 - 1.8e-31 107.7 0.0 4.1e-31 106.6 0.0 1.6 2 0 0 2 2 2 1 Integrase core domain rve PF00665.26 AHV94891.1 - 5.6e-24 84.6 0.0 9.5e-24 83.9 0.0 1.3 1 0 0 1 1 1 1 Integrase core domain rve_2 PF13333.6 AHV94891.1 - 7e-07 29.3 0.0 1.2e-06 28.6 0.0 1.3 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS240 PF13610.6 AHV94891.1 - 0.00052 20.3 0.0 0.00079 19.7 0.0 1.4 1 0 0 1 1 1 1 DDE domain FAD-oxidase_C PF02913.19 AHV94892.1 - 6.2e-51 173.4 0.0 8.7e-51 173.0 0.0 1.2 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 AHV94892.1 - 4.4e-37 126.9 1.7 7.9e-37 126.1 1.7 1.4 1 0 0 1 1 1 1 FAD binding domain TauE PF01925.19 AHV94893.1 - 8.2e-16 58.3 36.1 9.4e-16 58.2 36.1 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF2613 PF11021.8 AHV94893.1 - 0.12 12.5 0.9 0.69 10.1 0.9 2.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2613) SQS_PSY PF00494.19 AHV94894.1 - 4.1e-64 216.6 1.5 4.7e-64 216.4 1.5 1.0 1 0 0 1 1 1 1 Squalene/phytoene synthase zf_Hakai PF18408.1 AHV94894.1 - 0.14 11.9 0.0 0.34 10.6 0.0 1.6 1 0 0 1 1 1 0 C2H2 Hakai zinc finger domain tRNA-synt_2 PF00152.20 AHV94895.1 - 2.2e-81 273.3 0.0 2.7e-81 273.1 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 AHV94895.1 - 1e-16 60.6 0.1 2.3e-16 59.6 0.1 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 AHV94895.1 - 0.0033 17.0 0.1 3.1 7.2 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) Peptidase_A24 PF01478.18 AHV94896.1 - 6.8e-22 77.9 13.6 6.8e-22 77.9 13.6 2.1 3 0 0 3 3 3 1 Type IV leader peptidase family DiS_P_DiS PF06750.13 AHV94896.1 - 0.0077 16.3 0.1 0.014 15.5 0.1 1.5 1 0 0 1 1 1 1 Bacterial Peptidase A24 N-terminal domain OAD_gamma PF04277.13 AHV94897.1 - 0.16 12.6 1.8 0.34 11.5 1.8 1.5 1 0 0 1 1 1 0 Oxaloacetate decarboxylase, gamma chain LysR_substrate PF03466.20 AHV94898.1 - 1.9e-36 125.4 3.7 1.9e-36 125.4 3.7 1.7 2 0 0 2 2 2 1 LysR substrate binding domain HTH_1 PF00126.27 AHV94898.1 - 9.7e-17 60.7 2.7 1.4e-16 60.2 0.1 2.5 3 0 0 3 3 3 1 Bacterial regulatory helix-turn-helix protein, lysR family SBP_bac_11 PF13531.6 AHV94898.1 - 0.016 15.0 0.1 0.37 10.5 0.0 2.7 2 1 1 3 3 3 0 Bacterial extracellular solute-binding protein HTH_24 PF13412.6 AHV94898.1 - 0.021 14.4 0.1 0.043 13.4 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_30 PF13556.6 AHV94898.1 - 0.13 12.1 2.5 1.5 8.7 0.3 3.1 2 1 1 3 3 3 0 PucR C-terminal helix-turn-helix domain Bcr-Abl_Oligo PF09036.10 AHV94899.1 - 0.035 14.1 0.0 0.13 12.3 0.0 2.0 1 0 0 1 1 1 0 Bcr-Abl oncoprotein oligomerisation domain HTH_31 PF13560.6 AHV94899.1 - 0.13 12.6 0.5 0.13 12.6 0.5 2.8 2 1 0 2 2 2 0 Helix-turn-helix domain DUF1179 PF06678.11 AHV94899.1 - 0.83 9.7 4.0 2.9 7.9 0.2 2.8 1 1 2 3 3 3 0 Protein of unknown function (DUF1179) OKR_DC_1 PF01276.20 AHV94900.1 - 5.5e-117 391.0 0.1 7.4e-117 390.6 0.1 1.1 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, major domain OKR_DC_1_N PF03709.15 AHV94900.1 - 8e-39 132.4 1.1 7.9e-38 129.1 0.1 2.9 2 1 1 3 3 3 1 Orn/Lys/Arg decarboxylase, N-terminal domain DegT_DnrJ_EryC1 PF01041.17 AHV94900.1 - 0.00056 19.3 0.0 0.00092 18.6 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family DUF945 PF06097.11 AHV94901.1 - 1.6e-107 360.5 0.1 1.9e-107 360.2 0.1 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF945) YbjN PF10722.9 AHV94901.1 - 9.2e-09 35.4 0.2 1.4e-07 31.6 0.0 3.0 4 0 0 4 4 4 1 Putative bacterial sensory transduction regulator Dala_Dala_lig_C PF07478.13 AHV94902.1 - 1.5e-53 181.4 0.0 1.9e-53 181.0 0.0 1.1 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus Dala_Dala_lig_N PF01820.21 AHV94902.1 - 6e-21 74.9 0.2 4.2e-19 68.9 0.2 2.3 1 1 0 1 1 1 1 D-ala D-ala ligase N-terminus ATP-grasp PF02222.22 AHV94902.1 - 5.4e-07 29.3 0.0 8.2e-07 28.7 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.14 AHV94902.1 - 1e-05 25.7 0.0 1.9e-05 24.8 0.0 1.4 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_ST PF14397.6 AHV94902.1 - 4.8e-05 22.8 0.0 0.071 12.3 0.0 2.1 2 0 0 2 2 2 2 Sugar-transfer associated ATP-grasp TTL PF03133.15 AHV94902.1 - 0.00043 19.5 0.0 0.0009 18.5 0.0 1.4 2 0 0 2 2 2 1 Tubulin-tyrosine ligase family ATP-grasp_4 PF13535.6 AHV94902.1 - 0.0024 17.5 0.0 0.013 15.1 0.0 1.9 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_YheCD PF14398.6 AHV94902.1 - 0.018 14.3 0.0 0.028 13.7 0.0 1.3 1 0 0 1 1 1 0 YheC/D like ATP-grasp RimK PF08443.11 AHV94902.1 - 0.022 14.3 0.0 4.4 6.9 0.0 2.1 2 0 0 2 2 2 0 RimK-like ATP-grasp domain Cytochrom_C PF00034.21 AHV94903.1 - 3.4e-23 82.6 0.1 2.3e-06 28.7 0.1 3.3 3 0 0 3 3 3 3 Cytochrome c Cytochrome_CBB3 PF13442.6 AHV94903.1 - 7.7e-19 67.8 1.2 4.2e-07 30.2 0.1 3.6 3 0 0 3 3 3 3 Cytochrome C oxidase, cbb3-type, subunit III Cytochrome_C7 PF14522.6 AHV94903.1 - 7.8e-05 22.6 0.7 6.3 6.9 0.1 3.3 3 0 0 3 3 3 3 Cytochrome c7 and related cytochrome c CCP_MauG PF03150.14 AHV94903.1 - 0.00057 20.6 2.5 1.2 9.7 0.1 3.3 1 1 0 3 3 3 2 Di-haem cytochrome c peroxidase Cytochrom_C550 PF14495.6 AHV94903.1 - 0.0011 18.7 2.2 0.11 12.2 0.2 4.1 5 1 0 5 5 5 1 Cytochrome c-550 domain Paired_CXXCH_1 PF09699.10 AHV94903.1 - 0.0014 18.4 6.7 2.6 7.9 0.1 3.4 3 0 0 3 3 3 3 Doubled CXXCH motif (Paired_CXXCH_1) DHOR PF06537.11 AHV94903.1 - 0.02 13.5 1.0 2.4 6.7 0.1 2.9 3 0 0 3 3 3 0 Di-haem oxidoreductase, putative peroxidase Cytochrom_CIII PF02085.16 AHV94903.1 - 0.05 14.0 1.3 11 6.4 0.1 3.1 3 0 0 3 3 3 0 Class III cytochrome C family Cytochrome_P460 PF16694.5 AHV94903.1 - 0.94 9.8 5.4 52 4.2 0.0 3.2 3 0 0 3 3 3 0 Cytochrome P460 DHC PF09626.10 AHV94903.1 - 1.2 10.0 8.3 26 5.7 0.1 3.7 3 1 1 4 4 4 0 Dihaem cytochrome c Defensin_5 PF18251.1 AHV94903.1 - 3.3 7.9 11.7 2.7 8.2 0.9 3.0 3 0 0 3 3 3 0 Fungal defensin Copsin Peptidase_M20 PF01546.28 AHV94905.1 - 1.5e-28 100.0 0.2 1.9e-28 99.6 0.2 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 AHV94905.1 - 9.5e-18 64.1 0.0 2.1e-17 63.0 0.0 1.6 1 0 0 1 1 1 1 Peptidase dimerisation domain COX2 PF00116.20 AHV94906.1 - 1.9e-22 79.4 0.0 3.4e-22 78.6 0.0 1.4 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, periplasmic domain Cytochrome_CBB3 PF13442.6 AHV94906.1 - 7.1e-11 42.3 0.1 1.8e-10 41.0 0.1 1.6 1 0 0 1 1 1 1 Cytochrome C oxidase, cbb3-type, subunit III Cytochrom_C PF00034.21 AHV94906.1 - 2.5e-06 28.5 2.9 5.2e-05 24.3 0.9 2.6 2 1 0 2 2 2 1 Cytochrome c bMG3 PF11974.8 AHV94908.1 - 1.1e-07 31.8 0.0 2.3e-07 30.8 0.0 1.5 1 0 0 1 1 1 1 Bacterial alpha-2-macroglobulin MG3 domain Aldedh PF00171.22 AHV94909.1 - 2.8e-64 217.4 0.0 3.1e-64 217.2 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family Aldedh PF00171.22 AHV94911.1 - 2.2e-171 570.5 0.8 2.5e-171 570.3 0.8 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family Pectinesterase PF01095.19 AHV94911.1 - 0.14 10.8 0.1 0.22 10.2 0.1 1.2 1 0 0 1 1 1 0 Pectinesterase Acyl-CoA_dh_1 PF00441.24 AHV94912.1 - 5.1e-35 120.9 0.2 7.3e-35 120.4 0.2 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 AHV94912.1 - 7.9e-22 77.3 0.1 1.2e-21 76.7 0.1 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 AHV94912.1 - 1.1e-15 58.1 0.7 1.6e-15 57.5 0.7 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Phage_attach PF05354.11 AHV94912.1 - 0.063 13.2 0.2 0.12 12.2 0.2 1.4 1 0 0 1 1 1 0 Phage Head-Tail Attachment DUF1932 PF09130.11 AHV94913.1 - 3.4e-17 62.2 0.5 8.1e-15 54.6 0.1 2.6 2 0 0 2 2 2 1 Domain of unknown function (DUF1932) NAD_binding_2 PF03446.15 AHV94913.1 - 3.8e-12 46.6 0.0 5.8e-12 46.1 0.0 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 AHV94913.1 - 1.6e-07 31.8 0.6 3.6e-07 30.7 0.2 1.8 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 AHV94913.1 - 4.3e-07 29.4 0.0 2e-06 27.3 0.0 1.9 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Shikimate_DH PF01488.20 AHV94913.1 - 0.00057 20.0 0.0 0.0015 18.6 0.0 1.7 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase IlvN PF07991.12 AHV94913.1 - 0.0014 18.2 0.0 0.0027 17.3 0.0 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_Gly3P_dh_N PF01210.23 AHV94913.1 - 0.0026 17.8 0.0 0.049 13.6 0.0 2.2 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.18 AHV94913.1 - 0.018 15.0 0.1 0.033 14.1 0.1 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Ribosomal_L18 PF17135.4 AHV94913.1 - 0.024 14.0 0.0 0.041 13.3 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein 60S L18 and 50S L18e ApbA PF02558.16 AHV94913.1 - 0.025 14.2 0.1 0.053 13.2 0.1 1.6 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA AlaDh_PNT_C PF01262.21 AHV94913.1 - 0.027 13.8 0.1 0.045 13.0 0.1 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain UDPG_MGDP_dh_C PF03720.15 AHV94913.1 - 0.03 14.7 0.0 0.07 13.6 0.0 1.6 2 0 0 2 2 1 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain PDH PF02153.17 AHV94913.1 - 0.15 11.0 0.0 0.2 10.6 0.0 1.2 1 0 0 1 1 1 0 Prephenate dehydrogenase Pyr_redox PF00070.27 AHV94913.1 - 0.19 12.3 0.1 4 8.1 0.0 2.4 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase AsnC_trans_reg PF01037.21 AHV94914.1 - 9.4e-14 51.1 0.2 1.4e-13 50.6 0.2 1.2 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 AHV94914.1 - 1.1e-07 31.3 0.0 1.2e-06 27.9 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 AHV94914.1 - 3.2e-05 23.7 1.2 5e-05 23.0 0.1 1.9 3 0 0 3 3 3 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.7 AHV94914.1 - 0.0084 16.0 0.2 0.014 15.3 0.2 1.4 1 0 0 1 1 1 1 MarR family Pdase_M17_N2 PF18295.1 AHV94914.1 - 0.055 13.7 0.0 0.07 13.4 0.0 1.3 1 0 0 1 1 1 0 M17 aminopeptidase N-terminal domain 2 Oxidored_FMN PF00724.20 AHV94916.1 - 3.2e-61 207.5 0.0 4.9e-61 206.9 0.0 1.2 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family FAD_binding_3 PF01494.19 AHV94916.1 - 1.9e-10 40.5 0.1 0.0012 18.1 0.0 3.1 2 1 0 2 2 2 2 FAD binding domain SE PF08491.10 AHV94916.1 - 0.11 11.6 0.0 0.19 10.8 0.0 1.3 1 0 0 1 1 1 0 Squalene epoxidase Pyr_redox PF00070.27 AHV94916.1 - 0.12 12.9 0.0 0.64 10.6 0.0 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase PseudoU_synth_2 PF00849.22 AHV94917.1 - 9.9e-32 110.2 0.0 1.3e-31 109.9 0.0 1.1 1 0 0 1 1 1 1 RNA pseudouridylate synthase S4 PF01479.25 AHV94917.1 - 7.1e-13 48.1 0.0 1.5e-12 47.0 0.0 1.6 1 0 0 1 1 1 1 S4 domain DHBP_synthase PF00926.19 AHV94918.1 - 1.5e-73 246.4 0.2 1.7e-73 246.2 0.2 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase SPOUT_MTase PF02590.17 AHV94918.1 - 0.22 11.5 0.0 0.36 10.8 0.0 1.3 1 0 0 1 1 1 0 Predicted SPOUT methyltransferase Sigma70_r4_2 PF08281.12 AHV94920.1 - 1.6e-15 56.5 0.9 7.8e-15 54.3 0.1 2.1 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r2 PF04542.14 AHV94920.1 - 2.1e-13 49.8 0.2 1.2e-07 31.4 0.0 2.4 2 0 0 2 2 2 2 Sigma-70 region 2 HTH_23 PF13384.6 AHV94920.1 - 3.6e-06 26.6 0.0 8.1e-06 25.5 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_r4 PF04545.16 AHV94920.1 - 1.3e-05 24.6 0.0 4.7e-05 22.8 0.0 1.9 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_11 PF08279.12 AHV94920.1 - 0.00022 21.1 0.0 0.00053 19.9 0.0 1.6 1 0 0 1 1 1 1 HTH domain HTH_28 PF13518.6 AHV94920.1 - 0.00069 19.7 0.0 0.0017 18.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.6 AHV94920.1 - 0.0012 18.8 0.1 0.0025 17.8 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn helix HTH_38 PF13936.6 AHV94920.1 - 0.0034 17.1 0.0 0.007 16.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain GerE PF00196.19 AHV94920.1 - 0.0045 16.5 0.0 0.01 15.3 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family MarR_2 PF12802.7 AHV94920.1 - 0.0082 16.0 0.4 0.1 12.5 0.2 2.7 2 1 0 2 2 2 1 MarR family HTH_AsnC-type PF13404.6 AHV94920.1 - 0.0092 15.8 0.0 0.025 14.4 0.0 1.7 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 AHV94920.1 - 0.064 12.8 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_Tnp_ISL3 PF13542.6 AHV94920.1 - 0.066 12.6 0.0 0.13 11.7 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_10 PF04967.12 AHV94920.1 - 0.079 12.8 0.0 0.18 11.6 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain TctC PF03401.14 AHV94921.1 - 2.9e-76 256.1 0.0 3.5e-76 255.9 0.0 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor MFS_1 PF07690.16 AHV94922.1 - 5.5e-55 186.7 46.0 6.7e-54 183.1 44.2 2.2 2 0 0 2 2 2 2 Major Facilitator Superfamily TRI12 PF06609.13 AHV94922.1 - 6.2e-11 41.4 14.3 6.2e-11 41.4 14.3 1.6 2 0 0 2 2 2 1 Fungal trichothecene efflux pump (TRI12) Sugar_tr PF00083.24 AHV94922.1 - 3.7e-07 29.4 10.1 3.7e-07 29.4 10.1 2.9 2 1 0 3 3 3 1 Sugar (and other) transporter OATP PF03137.20 AHV94922.1 - 0.015 13.7 20.4 0.18 10.0 0.5 3.3 2 1 1 3 3 3 0 Organic Anion Transporter Polypeptide (OATP) family MFS_3 PF05977.13 AHV94922.1 - 0.027 12.9 19.7 0.036 12.5 5.4 2.5 2 0 0 2 2 2 0 Transmembrane secretion effector ABC_tran PF00005.27 AHV94923.1 - 1.4e-33 116.3 0.0 2.5e-33 115.5 0.0 1.4 2 0 0 2 2 1 1 ABC transporter AAA_21 PF13304.6 AHV94923.1 - 3.8e-09 36.8 0.0 0.0013 18.6 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 AHV94923.1 - 1.5e-05 25.4 0.6 4.1e-05 24.0 0.6 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 AHV94923.1 - 2e-05 24.2 0.1 4.8e-05 23.0 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 AHV94923.1 - 4.2e-05 24.2 0.0 6.6e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 AHV94923.1 - 4.4e-05 23.3 0.3 8.1e-05 22.4 0.3 1.6 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 AHV94923.1 - 5.1e-05 23.6 0.2 0.00019 21.7 0.2 2.0 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 AHV94923.1 - 0.0011 18.4 0.0 0.016 14.6 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain T2SSE PF00437.20 AHV94923.1 - 0.0021 17.1 0.0 0.0026 16.9 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein RsgA_GTPase PF03193.16 AHV94923.1 - 0.0079 16.1 0.0 0.015 15.2 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase DUF3987 PF13148.6 AHV94923.1 - 0.0099 14.9 0.0 0.015 14.3 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3987) AAA_27 PF13514.6 AHV94923.1 - 0.017 14.7 0.1 0.074 12.6 0.1 2.2 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 AHV94923.1 - 0.025 14.8 0.2 0.04 14.1 0.2 1.7 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 AHV94923.1 - 0.025 14.0 0.0 0.038 13.4 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI ABC_ATPase PF09818.9 AHV94923.1 - 0.025 13.4 0.4 0.19 10.5 0.1 2.0 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_19 PF13245.6 AHV94923.1 - 0.029 14.7 0.0 0.044 14.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 AHV94923.1 - 0.034 13.7 0.7 0.095 12.3 0.7 1.8 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 AHV94923.1 - 0.058 13.5 0.0 0.092 12.8 0.0 1.5 1 1 0 1 1 1 0 50S ribosome-binding GTPase Adeno_IVa2 PF02456.15 AHV94923.1 - 0.079 11.7 0.0 0.11 11.2 0.0 1.1 1 0 0 1 1 1 0 Adenovirus IVa2 protein AAA PF00004.29 AHV94923.1 - 0.091 13.2 0.0 0.15 12.4 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 AHV94923.1 - 0.11 12.5 0.0 0.21 11.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) ComC PF03047.14 AHV94923.1 - 0.12 12.2 0.1 0.27 11.1 0.1 1.5 1 0 0 1 1 1 0 COMC family TetR_C_30 PF17939.1 AHV94923.1 - 0.15 12.3 1.3 0.22 11.8 1.3 1.3 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain AAA_24 PF13479.6 AHV94923.1 - 0.16 11.7 0.0 0.2 11.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 AHV94923.1 - 0.18 12.4 0.1 0.56 10.8 0.1 2.0 2 1 0 2 2 2 0 AAA domain B3_4 PF03483.17 AHV94924.1 - 1.7e-60 203.6 0.0 2.5e-60 203.1 0.0 1.3 1 0 0 1 1 1 1 B3/4 domain tRNA_synthFbeta PF17759.1 AHV94924.1 - 1.1e-42 145.9 0.0 1.7e-42 145.3 0.0 1.3 1 0 0 1 1 1 1 Phenylalanyl tRNA synthetase beta chain CLM domain tRNA_bind PF01588.20 AHV94924.1 - 7.8e-25 86.8 0.1 1.5e-24 85.9 0.1 1.5 1 0 0 1 1 1 1 Putative tRNA binding domain B5 PF03484.15 AHV94924.1 - 5.7e-20 71.4 0.0 1.8e-19 69.8 0.0 1.9 2 0 0 2 2 2 1 tRNA synthetase B5 domain VapB_antitoxin PF09957.9 AHV94924.1 - 0.1 12.5 0.1 0.36 10.8 0.1 1.9 1 0 0 1 1 1 0 Bacterial antitoxin of type II TA system, VapB Hfq PF17209.3 AHV94925.1 - 7.7e-32 108.8 0.3 8.9e-32 108.5 0.3 1.0 1 0 0 1 1 1 1 Hfq protein LSM PF01423.22 AHV94925.1 - 0.0012 18.4 0.0 0.0016 18.1 0.0 1.3 1 0 0 1 1 1 1 LSM domain SRP14 PF02290.15 AHV94925.1 - 0.081 13.3 0.0 0.097 13.1 0.0 1.3 1 1 0 1 1 1 0 Signal recognition particle 14kD protein UPF0014 PF03649.13 AHV94926.1 - 1.3e-14 54.2 6.2 1.5e-14 54.0 6.2 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0014) Wzy_C PF04932.15 AHV94926.1 - 1.1 8.9 6.4 1.3 8.7 6.4 1.1 1 0 0 1 1 1 0 O-Antigen ligase ACR_tran PF00873.19 AHV94927.1 - 8.1e-46 156.2 0.0 9e-46 156.1 0.0 1.0 1 0 0 1 1 1 1 AcrB/AcrD/AcrF family Gemini_V2 PF01524.17 AHV94927.1 - 0.033 14.4 0.0 0.072 13.3 0.0 1.5 1 0 0 1 1 1 0 Geminivirus V2 protein SBP_bac_11 PF13531.6 AHV94929.1 - 7.2e-52 176.4 12.8 8.4e-52 176.2 12.8 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 AHV94929.1 - 1.2e-15 58.2 5.4 5.5e-15 56.1 5.4 1.8 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein Phosphonate-bd PF12974.7 AHV94929.1 - 8.2e-10 38.7 1.8 1.2e-09 38.1 1.4 1.6 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein SBP_bac_6 PF13343.6 AHV94929.1 - 2.3e-08 33.8 2.2 4.4e-08 32.8 0.1 2.2 2 1 0 3 3 3 1 Bacterial extracellular solute-binding protein OpuAC PF04069.12 AHV94929.1 - 6.3e-06 26.0 1.9 7.6e-06 25.7 1.9 1.2 1 0 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system PBP_like_2 PF12849.7 AHV94929.1 - 8.8e-06 25.6 7.6 0.00045 20.0 7.6 2.2 1 1 0 1 1 1 1 PBP superfamily domain SBP_bac_8 PF13416.6 AHV94929.1 - 0.00074 19.4 3.2 0.039 13.7 0.8 2.3 1 1 1 2 2 2 2 Bacterial extracellular solute-binding protein Ribosomal_S11 PF00411.19 AHV94930.1 - 2.9e-50 169.3 0.9 4.1e-50 168.8 0.9 1.2 1 0 0 1 1 1 1 Ribosomal protein S11 UvrC_HhH_N PF08459.11 AHV94931.1 - 6.6e-20 71.6 0.0 1.5e-19 70.4 0.0 1.5 1 0 0 1 1 1 1 UvrC Helix-hairpin-helix N-terminal GIY-YIG PF01541.24 AHV94931.1 - 1e-10 41.7 0.0 3e-10 40.2 0.0 1.8 2 0 0 2 2 2 1 GIY-YIG catalytic domain UVR PF02151.19 AHV94931.1 - 2.7e-08 33.3 0.7 5.2e-08 32.4 0.7 1.5 1 0 0 1 1 1 1 UvrB/uvrC motif SBP_bac_1 PF01547.25 AHV94932.1 - 9.4e-14 52.1 0.6 1.4e-13 51.5 0.6 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein THB PF18362.1 AHV94932.1 - 0.013 15.1 0.0 0.025 14.1 0.0 1.5 1 0 0 1 1 1 0 Tri-helix bundle domain CsbD PF05532.12 AHV94933.1 - 3.4e-07 30.1 2.5 4.9e-07 29.5 2.5 1.3 1 0 0 1 1 1 1 CsbD-like DUF883 PF05957.13 AHV94933.1 - 3.9e-05 24.2 2.3 4.4e-05 24.0 2.3 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF883) Herpes_TK PF00693.18 AHV94933.1 - 0.061 12.5 0.0 0.074 12.3 0.0 1.1 1 0 0 1 1 1 0 Thymidine kinase from herpesvirus Chlorosome_CsmC PF11098.8 AHV94933.1 - 0.08 12.9 0.3 0.17 11.9 0.2 1.5 1 1 1 2 2 2 0 Chlorosome envelope protein C SpoVAB PF13782.6 AHV94933.1 - 0.14 12.5 0.0 0.15 12.4 0.0 1.1 1 0 0 1 1 1 0 Stage V sporulation protein AB PaaA_PaaC PF05138.12 AHV94934.1 - 1.2e-103 345.9 0.0 1.4e-103 345.6 0.0 1.0 1 0 0 1 1 1 1 Phenylacetic acid catabolic protein Peripla_BP_6 PF13458.6 AHV94935.1 - 6.4e-59 200.3 9.2 7.3e-59 200.1 9.2 1.0 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.28 AHV94935.1 - 1.3e-21 77.1 0.0 7.1e-21 74.7 0.0 1.8 1 1 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.6 AHV94935.1 - 2.8e-13 49.6 0.1 3.4e-12 46.0 0.1 2.0 1 1 0 1 1 1 1 Periplasmic binding protein domain MS_channel PF00924.18 AHV94936.1 - 2.1e-32 112.4 1.5 4.3e-32 111.3 1.5 1.6 1 0 0 1 1 1 1 Mechanosensitive ion channel OsmC PF02566.19 AHV94937.1 - 3.4e-07 30.7 0.0 3.9e-07 30.5 0.0 1.0 1 0 0 1 1 1 1 OsmC-like protein DUF3499 PF12005.8 AHV94937.1 - 0.036 14.7 0.0 0.041 14.5 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3499) Sigma70_r4_2 PF08281.12 AHV94938.1 - 2.4e-15 55.9 0.0 4.4e-15 55.1 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r2 PF04542.14 AHV94938.1 - 4.7e-11 42.3 0.8 7.6e-11 41.6 0.8 1.4 1 0 0 1 1 1 1 Sigma-70 region 2 Sigma70_r4 PF04545.16 AHV94938.1 - 1.2e-07 31.1 0.1 2.4e-07 30.2 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_ECF PF07638.11 AHV94938.1 - 3.9e-07 30.1 0.4 7.8e-07 29.2 0.4 1.4 1 1 0 1 1 1 1 ECF sigma factor HTH_23 PF13384.6 AHV94938.1 - 0.00025 20.8 1.1 0.00061 19.5 0.1 2.2 2 0 0 2 2 2 1 Homeodomain-like domain HTH_29 PF13551.6 AHV94938.1 - 0.0022 18.0 0.0 0.0065 16.5 0.0 1.8 1 0 0 1 1 1 1 Winged helix-turn helix HTH_24 PF13412.6 AHV94938.1 - 0.0024 17.4 0.0 0.0056 16.2 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding GerE PF00196.19 AHV94938.1 - 0.0073 15.8 0.0 0.014 15.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_20 PF12840.7 AHV94938.1 - 0.016 15.3 2.3 0.028 14.5 0.2 2.4 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 AHV94938.1 - 0.016 14.6 0.1 0.043 13.2 0.1 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_40 PF14493.6 AHV94938.1 - 0.035 14.6 0.0 0.063 13.7 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain TPR_4 PF07721.14 AHV94938.1 - 0.084 13.5 2.4 0.38 11.5 2.4 2.2 1 0 0 1 1 1 0 Tetratricopeptide repeat TPR_7 PF13176.6 AHV94938.1 - 0.11 12.6 1.8 0.86 9.8 0.1 2.5 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_2 PF07719.17 AHV94938.1 - 0.29 11.4 1.5 3.3 8.0 0.1 2.5 2 0 0 2 2 2 0 Tetratricopeptide repeat Sulf_transp PF04143.14 AHV94939.1 - 2.3e-07 30.7 5.2 2.6e-07 30.5 5.2 1.2 1 0 0 1 1 1 1 Sulphur transport Pyr_redox_2 PF07992.14 AHV94940.1 - 5.7e-62 209.6 0.0 7.8e-62 209.2 0.0 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 AHV94940.1 - 4.7e-34 117.0 0.1 8.2e-34 116.2 0.1 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 AHV94940.1 - 1.7e-20 73.3 0.6 1.8e-17 63.7 0.0 2.6 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 AHV94940.1 - 8.6e-15 54.8 0.0 2.6e-13 49.9 0.0 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 AHV94940.1 - 3.2e-06 26.1 0.2 0.035 12.8 0.0 3.6 4 0 0 4 4 4 2 HI0933-like protein AlaDh_PNT_C PF01262.21 AHV94940.1 - 1e-05 24.9 0.6 0.029 13.7 0.5 2.5 3 0 0 3 3 3 2 Alanine dehydrogenase/PNT, C-terminal domain K_oxygenase PF13434.6 AHV94940.1 - 9.5e-05 21.7 0.0 0.0027 16.9 0.0 2.2 1 1 1 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) FAD_oxidored PF12831.7 AHV94940.1 - 0.0005 19.5 0.1 0.0008 18.9 0.1 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase GIDA PF01134.22 AHV94940.1 - 0.0019 17.4 3.8 0.002 17.3 0.6 2.3 2 1 1 3 3 3 1 Glucose inhibited division protein A 3HCDH_N PF02737.18 AHV94940.1 - 0.0035 17.3 0.4 0.22 11.4 0.0 2.6 3 0 0 3 3 3 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 AHV94940.1 - 0.012 15.0 0.6 2.8 7.3 0.4 2.3 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XdhC_C PF13478.6 AHV94940.1 - 0.012 16.1 0.1 7.1 7.1 0.0 2.4 2 0 0 2 2 2 0 XdhC Rossmann domain NAD_binding_7 PF13241.6 AHV94940.1 - 0.03 14.8 0.1 1.1 9.7 0.0 2.4 2 0 0 2 2 2 0 Putative NAD(P)-binding NAD_binding_8 PF13450.6 AHV94940.1 - 0.075 13.3 1.8 0.3 11.3 1.5 2.3 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 AHV94940.1 - 0.18 11.0 0.3 0.5 9.6 0.2 1.8 2 0 0 2 2 2 0 Thi4 family FAD_binding_2 PF00890.24 AHV94940.1 - 0.28 10.2 5.7 0.2 10.7 2.3 2.3 3 0 0 3 3 3 0 FAD binding domain DAO PF01266.24 AHV94940.1 - 1.9 8.0 8.8 6.6 6.2 0.6 3.1 2 1 1 3 3 3 0 FAD dependent oxidoreductase DUF1800 PF08811.11 AHV94941.1 - 5e-127 424.5 0.8 6.2e-127 424.2 0.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1800) PSD2 PF07624.11 AHV94941.1 - 0.0016 18.2 0.0 0.012 15.4 0.0 2.5 2 0 0 2 2 2 1 Protein of unknown function (DUF1585) MFS_1 PF07690.16 AHV94942.1 - 4.9e-20 71.8 18.5 5.9e-20 71.5 18.5 1.1 1 0 0 1 1 1 1 Major Facilitator Superfamily MFS_4 PF06779.14 AHV94942.1 - 2.1e-05 24.0 10.2 2.4e-05 23.8 10.2 1.0 1 0 0 1 1 1 1 Uncharacterised MFS-type transporter YbfB Sugar_tr PF00083.24 AHV94942.1 - 0.0001 21.3 9.8 0.00012 21.1 9.8 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter OATP PF03137.20 AHV94942.1 - 0.015 13.6 9.7 0.037 12.3 8.1 1.9 1 1 1 2 2 2 0 Organic Anion Transporter Polypeptide (OATP) family Peptidase_S66C PF17676.1 AHV94943.1 - 6.4e-34 117.2 0.0 9.6e-34 116.6 0.0 1.3 1 0 0 1 1 1 1 LD-carboxypeptidase C-terminal domain Peptidase_S66 PF02016.15 AHV94943.1 - 7.2e-27 93.9 0.0 1.5e-26 92.9 0.0 1.5 1 0 0 1 1 1 1 LD-carboxypeptidase N-terminal domain LZ_Tnp_IS481 PF13011.6 AHV94944.1 - 1.3e-22 80.1 2.6 3e-20 72.5 0.4 2.3 1 1 1 2 2 2 1 leucine-zipper of insertion element IS481 HTH_23 PF13384.6 AHV94944.1 - 1.4e-17 63.0 4.4 4.4e-08 32.7 0.1 2.4 2 0 0 2 2 2 2 Homeodomain-like domain HTH_28 PF13518.6 AHV94944.1 - 6.6e-17 61.4 2.6 2.1e-11 43.8 0.1 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_29 PF13551.6 AHV94944.1 - 1.7e-12 47.2 0.6 9.2e-07 28.8 0.0 2.4 2 0 0 2 2 2 2 Winged helix-turn helix HTH_32 PF13565.6 AHV94944.1 - 3e-11 43.8 0.7 3e-11 43.8 0.7 1.7 2 0 0 2 2 1 1 Homeodomain-like domain HTH_38 PF13936.6 AHV94944.1 - 1.4e-06 27.9 2.0 3.5e-06 26.7 1.2 2.1 2 1 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 AHV94944.1 - 2.6e-06 27.2 3.6 3.9e-05 23.5 1.3 2.4 2 0 0 2 2 2 1 MarR family HTH_Tnp_ISL3 PF13542.6 AHV94944.1 - 2.7e-06 26.7 1.8 0.00081 18.7 0.6 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 Sigma70_r4_2 PF08281.12 AHV94944.1 - 6.6e-06 25.7 0.1 0.0026 17.4 0.3 2.3 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 AHV94944.1 - 1.3e-05 24.6 0.1 0.00023 20.6 0.2 2.3 2 0 0 2 2 2 1 Sigma-70, region 4 YdaS_antitoxin PF15943.5 AHV94944.1 - 5.4e-05 23.0 0.2 0.1 12.5 0.0 2.6 2 1 0 2 2 2 2 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_24 PF13412.6 AHV94944.1 - 7.3e-05 22.3 0.2 0.0009 18.8 0.3 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_3 PF01381.22 AHV94944.1 - 7.5e-05 22.7 0.7 0.0058 16.7 0.3 2.5 2 0 0 2 2 2 1 Helix-turn-helix HTH_Crp_2 PF13545.6 AHV94944.1 - 0.00013 21.8 0.9 0.0014 18.5 0.4 2.5 2 1 0 2 2 2 1 Crp-like helix-turn-helix domain Trp_repressor PF01371.19 AHV94944.1 - 0.00022 21.3 0.1 0.0024 17.9 0.1 2.0 2 0 0 2 2 2 1 Trp repressor protein LacI PF00356.21 AHV94944.1 - 0.00028 20.6 1.0 0.0018 18.0 0.6 2.3 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family CENP-B_N PF04218.13 AHV94944.1 - 0.00031 20.3 0.0 0.68 9.6 0.1 2.3 2 0 0 2 2 2 2 CENP-B N-terminal DNA-binding domain HTH_5 PF01022.20 AHV94944.1 - 0.00037 20.3 0.0 0.38 10.6 0.0 2.6 3 0 0 3 3 2 1 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.19 AHV94944.1 - 0.00042 20.4 0.0 0.013 15.7 0.0 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain SpoIIID PF12116.8 AHV94944.1 - 0.00053 20.0 0.0 0.38 10.9 0.0 2.2 2 0 0 2 2 2 1 Stage III sporulation protein D HTH_31 PF13560.6 AHV94944.1 - 0.00056 20.2 1.6 0.00056 20.2 1.6 3.3 3 2 1 4 4 2 1 Helix-turn-helix domain HTH_IclR PF09339.10 AHV94944.1 - 0.00057 19.6 1.6 0.015 15.1 0.7 2.6 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_11 PF08279.12 AHV94944.1 - 0.00061 19.7 0.5 0.0061 16.5 0.5 2.4 2 0 0 2 2 2 1 HTH domain RepB PF07506.11 AHV94944.1 - 0.00074 19.7 0.2 0.2 11.7 0.1 2.1 1 1 1 2 2 2 1 RepB plasmid partitioning protein HTH_psq PF05225.16 AHV94944.1 - 0.001 18.8 0.5 0.97 9.2 0.5 2.3 2 0 0 2 2 2 1 helix-turn-helix, Psq domain GntR PF00392.21 AHV94944.1 - 0.001 18.7 0.7 0.19 11.4 0.3 2.5 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_AsnC-type PF13404.6 AHV94944.1 - 0.0012 18.6 3.1 0.023 14.5 1.4 2.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_17 PF12728.7 AHV94944.1 - 0.0016 18.6 0.1 2.8 8.2 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Tnp_1 PF01527.20 AHV94944.1 - 0.0016 18.7 0.5 0.037 14.4 0.0 2.2 1 1 1 2 2 2 1 Transposase HTH_30 PF13556.6 AHV94944.1 - 0.0029 17.4 0.1 0.71 9.7 0.0 2.5 2 0 0 2 2 2 1 PucR C-terminal helix-turn-helix domain HTH_10 PF04967.12 AHV94944.1 - 0.003 17.3 0.1 0.021 14.6 0.2 2.1 2 0 0 2 2 2 1 HTH DNA binding domain HTH_35 PF13693.6 AHV94944.1 - 0.0032 17.5 0.8 0.026 14.5 0.5 2.1 1 1 1 2 2 2 1 Winged helix-turn-helix DNA-binding UPF0175 PF03683.13 AHV94944.1 - 0.0034 17.1 0.4 0.037 13.7 0.1 2.3 2 1 1 3 3 3 1 Uncharacterised protein family (UPF0175) HTH_37 PF13744.6 AHV94944.1 - 0.0042 17.0 0.1 0.049 13.6 0.1 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Tnp_4 PF13613.6 AHV94944.1 - 0.0064 16.2 0.1 0.029 14.1 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix of DDE superfamily endonuclease Crp PF00325.20 AHV94944.1 - 0.0084 15.7 1.5 0.028 14.1 0.5 2.3 2 0 0 2 2 2 1 Bacterial regulatory proteins, crp family HTH_36 PF13730.6 AHV94944.1 - 0.012 15.5 0.0 0.23 11.4 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain MarR PF01047.22 AHV94944.1 - 0.014 15.3 0.1 0.062 13.2 0.1 2.1 2 1 0 2 2 2 0 MarR family P22_Cro PF14549.6 AHV94944.1 - 0.017 15.0 2.0 3.9 7.4 0.1 2.3 2 0 0 2 2 2 0 DNA-binding transcriptional regulator Cro DUF746 PF05344.11 AHV94944.1 - 0.02 14.7 0.1 0.41 10.5 0.0 2.3 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) HTH_DeoR PF08220.12 AHV94944.1 - 0.023 14.4 0.1 4.2 7.2 0.0 2.5 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain HTH_1 PF00126.27 AHV94944.1 - 0.025 14.5 2.9 2 8.5 0.5 2.5 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_8 PF02954.19 AHV94944.1 - 0.049 13.4 0.9 6.3 6.7 0.8 2.5 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family Sigma54_DBD PF04552.13 AHV94944.1 - 0.074 12.8 0.1 0.12 12.0 0.1 1.3 1 0 0 1 1 1 0 Sigma-54, DNA binding domain TrmB PF01978.19 AHV94944.1 - 0.077 12.9 0.0 0.26 11.2 0.1 1.8 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_7 PF02796.15 AHV94944.1 - 0.079 13.1 0.4 0.21 11.7 0.1 1.8 2 0 0 2 2 1 0 Helix-turn-helix domain of resolvase DUF1804 PF08822.11 AHV94944.1 - 0.079 12.9 0.2 7.6 6.5 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1804) HTH_26 PF13443.6 AHV94944.1 - 0.094 13.2 0.0 1.4 9.4 0.1 2.3 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain MerR_1 PF13411.6 AHV94944.1 - 0.11 12.7 0.7 1.1 9.4 0.0 2.6 3 0 0 3 3 2 0 MerR HTH family regulatory protein KORA PF16509.5 AHV94944.1 - 0.11 12.8 0.1 1.3 9.3 0.0 2.1 2 0 0 2 2 2 0 TrfB plasmid transcriptional repressor HTH_40 PF14493.6 AHV94944.1 - 0.13 12.8 0.0 1.4 9.4 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain Glyc_hyd_38C_2 PF18230.1 AHV94944.1 - 0.17 12.0 0.0 0.48 10.6 0.0 1.7 2 0 0 2 2 1 0 Glycosyl hydrolases family 38 C-terminal sub-domain HTH_Tnp_Tc3_2 PF01498.18 AHV94944.1 - 0.18 12.1 0.1 0.18 12.1 0.1 2.5 4 0 0 4 4 2 0 Transposase HTH_33 PF13592.6 AHV94944.1 - 0.28 10.9 1.4 1.2 8.8 0.1 2.7 4 1 0 4 4 2 0 Winged helix-turn helix MerR PF00376.23 AHV94944.1 - 0.37 10.6 7.8 1.5 8.7 0.0 3.4 4 0 0 4 4 3 0 MerR family regulatory protein # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Bordetella_holmesii_ATCC_51541-ASM61248v1/GCA_000612485.1_ASM61248v1_protein.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Bordetella_holmesii_ATCC_51541-ASM61248v1/GCA_000612485.1_ASM61248v1_protein.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Bordetella_holmesii_ATCC_51541-ASM61248v1/GCA_000612485.1_ASM61248v1_protein.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Bordetella_holmesii_ATCC_51541-ASM61248v1/GCA_000612485.1_ASM61248v1_protein.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Sun Mar 24 02:11:43 2019 # [ok]