# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- PI-TkoII_IV PF18714.1 BAD84190.1 - 2.9e-81 270.2 4.2 7.2e-81 268.9 4.2 1.7 1 0 0 1 1 1 1 DNA polymerase II intein Domain IV DNA_pol_B PF00136.21 BAD84190.1 - 1e-71 242.1 0.2 6.6e-45 153.7 0.3 3.3 3 0 0 3 3 3 3 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 BAD84190.1 - 2.5e-49 168.3 0.5 3.7e-33 115.1 0.0 2.5 1 1 1 2 2 2 2 DNA polymerase family B, exonuclease domain Intein_splicing PF14890.6 BAD84190.1 - 1.8e-48 163.9 0.0 1.3e-38 132.0 0.1 3.3 3 1 0 3 3 3 2 Intein splicing domain LAGLIDADG_3 PF14528.6 BAD84190.1 - 8.9e-26 90.0 6.4 4.2e-07 30.2 0.2 5.1 4 0 0 4 4 4 4 LAGLIDADG-like domain RNase_H_2 PF13482.6 BAD84190.1 - 1.8e-08 34.5 0.2 6.4e-08 32.8 0.2 2.0 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.9 BAD84190.1 - 1.9e-08 34.3 0.0 3.5e-08 33.4 0.0 1.4 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB LAGLIDADG_WhiA PF14527.6 BAD84190.1 - 0.00069 19.6 2.7 4 7.6 0.0 5.1 4 0 0 4 4 4 1 WhiA LAGLIDADG-like domain Vint PF14623.6 BAD84190.1 - 0.0014 18.5 0.0 0.0048 16.7 0.0 2.0 1 0 0 1 1 1 1 Hint-domain LAGLIDADG_2 PF03161.13 BAD84190.1 - 0.0031 17.5 0.1 0.015 15.3 0.1 2.2 1 1 0 1 1 1 1 LAGLIDADG DNA endonuclease family Hint PF01079.20 BAD84190.1 - 0.011 15.2 0.0 0.33 10.4 0.0 2.4 2 0 0 2 2 2 0 Hint module DUF45 PF01863.17 BAD84191.1 - 5e-49 167.1 0.0 1.1e-48 166.1 0.0 1.5 1 1 0 1 1 1 1 Protein of unknown function DUF45 WLM PF08325.10 BAD84191.1 - 0.00099 19.2 0.2 0.0016 18.6 0.2 1.2 1 0 0 1 1 1 1 WLM domain Peptidase_M56 PF05569.11 BAD84191.1 - 0.17 11.0 0.2 0.24 10.5 0.2 1.1 1 0 0 1 1 1 0 BlaR1 peptidase M56 UBM PF14377.6 BAD84191.1 - 0.71 9.4 2.9 3.8 7.1 0.1 2.3 2 0 0 2 2 2 0 Ubiquitin binding region NfeD PF01957.18 BAD84192.1 - 3.6e-13 49.7 0.6 5.1e-13 49.2 0.6 1.4 1 1 0 1 1 1 1 NfeD-like C-terminal, partner-binding EbsA PF17255.2 BAD84193.1 - 0.0088 16.4 1.3 0.017 15.4 0.8 1.8 1 1 0 1 1 1 1 EbsA-like protein bPH_5 PF10882.8 BAD84193.1 - 0.036 14.1 0.0 0.066 13.3 0.0 1.6 1 1 0 1 1 1 0 Bacterial PH domain DUF3093 PF11292.8 BAD84193.1 - 0.076 13.3 0.1 0.39 11.0 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3093) DUF4714 PF15833.5 BAD84193.1 - 0.16 12.0 0.1 0.19 11.7 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4714) DUF2273 PF10031.9 BAD84193.1 - 0.19 11.7 0.2 0.19 11.7 0.2 1.8 2 0 0 2 2 2 0 Small integral membrane protein (DUF2273) CoA_binding_2 PF13380.6 BAD84194.1 - 1.5e-40 138.3 0.0 1.8e-40 138.0 0.0 1.1 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.19 BAD84194.1 - 6.6e-09 36.3 0.0 9.5e-09 35.8 0.0 1.3 1 0 0 1 1 1 1 CoA binding domain LEM PF03020.15 BAD84194.1 - 0.067 12.8 0.0 0.82 9.3 0.0 2.1 2 0 0 2 2 2 0 LEM domain PIN_2 PF10130.9 BAD84195.1 - 6.8e-11 42.5 0.0 7.3e-11 42.4 0.0 1.0 1 0 0 1 1 1 1 PIN domain PIN_8 PF18476.1 BAD84195.1 - 0.00024 21.0 0.0 0.00028 20.8 0.0 1.1 1 0 0 1 1 1 1 PIN like domain PIN_12 PF16289.5 BAD84195.1 - 0.012 16.1 0.2 0.014 15.9 0.2 1.1 1 0 0 1 1 1 0 PIN domain UPF0020 PF01170.18 BAD84197.1 - 1.3e-13 51.1 0.0 5.9e-11 42.4 0.0 3.5 2 1 0 2 2 2 1 Putative RNA methylase family UPF0020 N6_N4_Mtase PF01555.18 BAD84197.1 - 3.9e-07 30.0 0.0 0.00028 20.7 0.0 2.9 2 1 0 2 2 2 1 DNA methylase Methyltransf_11 PF08241.12 BAD84197.1 - 0.013 16.1 0.0 0.1 13.3 0.0 2.1 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_23 PF13489.6 BAD84197.1 - 0.019 14.8 0.0 0.1 12.4 0.0 2.0 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_15 PF09445.10 BAD84197.1 - 0.044 13.4 0.0 0.07 12.7 0.0 1.5 1 1 0 1 1 1 0 RNA cap guanine-N2 methyltransferase N6_Mtase PF02384.16 BAD84197.1 - 0.051 12.8 0.0 0.08 12.2 0.0 1.2 1 0 0 1 1 1 0 N-6 DNA Methylase Methyltransf_5 PF01795.19 BAD84197.1 - 0.11 12.0 0.0 0.19 11.2 0.0 1.4 1 0 0 1 1 1 0 MraW methylase family AdoMet_MTase PF07757.13 BAD84197.1 - 0.14 12.5 0.1 23 5.4 0.0 2.4 2 0 0 2 2 2 0 Predicted AdoMet-dependent methyltransferase ANAPC3 PF12895.7 BAD84198.1 - 9.7e-06 25.7 0.0 0.42 10.9 0.0 3.7 3 0 0 3 3 3 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_19 PF14559.6 BAD84198.1 - 0.00019 21.9 3.7 0.6 10.7 0.2 4.6 5 0 0 5 5 5 1 Tetratricopeptide repeat TPR_14 PF13428.6 BAD84198.1 - 0.00036 21.1 9.6 13 6.9 0.0 6.1 6 0 0 6 6 6 1 Tetratricopeptide repeat TPR_2 PF07719.17 BAD84198.1 - 0.0013 18.6 2.7 1.8 8.9 0.0 5.1 6 0 0 6 6 5 1 Tetratricopeptide repeat TPR_4 PF07721.14 BAD84198.1 - 0.0026 18.2 1.9 33 5.5 0.0 5.8 6 0 0 6 6 6 0 Tetratricopeptide repeat TPR_6 PF13174.6 BAD84198.1 - 0.0048 17.4 1.2 12 6.8 0.1 4.7 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_20 PF14561.6 BAD84198.1 - 0.0051 17.1 2.1 4.2 7.8 0.0 3.6 4 0 0 4 4 3 2 Tetratricopeptide repeat TPR_1 PF00515.28 BAD84198.1 - 0.007 16.2 2.5 3.2 7.7 0.0 4.7 5 0 0 5 5 5 1 Tetratricopeptide repeat TPR_12 PF13424.6 BAD84198.1 - 0.0082 16.4 2.2 12 6.3 0.1 4.7 5 1 1 6 6 6 1 Tetratricopeptide repeat TPR_8 PF13181.6 BAD84198.1 - 0.011 15.9 0.7 29 5.2 0.0 4.6 5 0 0 5 5 4 0 Tetratricopeptide repeat IDEAL PF08858.10 BAD84198.1 - 0.076 12.8 1.3 0.16 11.7 0.4 2.0 2 0 0 2 2 2 0 IDEAL domain TPR_21 PF09976.9 BAD84198.1 - 0.12 12.1 2.8 1.4 8.6 0.3 2.3 2 0 0 2 2 2 0 Tetratricopeptide repeat-like domain TPR_16 PF13432.6 BAD84198.1 - 0.39 11.4 10.8 10 6.9 0.1 5.0 6 0 0 6 6 6 0 Tetratricopeptide repeat UPF0047 PF01894.17 BAD84200.1 - 2.7e-37 127.4 0.1 3.1e-37 127.2 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 MMR_HSR1 PF01926.23 BAD84201.1 - 5.2e-23 81.3 0.1 7.6e-23 80.8 0.1 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 BAD84201.1 - 1.5e-14 53.8 0.1 2.3e-14 53.2 0.1 1.3 1 1 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.27 BAD84201.1 - 4e-10 39.6 0.5 5.2e-07 29.4 0.0 2.3 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain Dynamin_N PF00350.23 BAD84201.1 - 4.9e-09 36.5 0.7 0.00098 19.2 0.2 2.4 2 1 1 3 3 3 2 Dynamin family RsgA_GTPase PF03193.16 BAD84201.1 - 1.2e-06 28.6 2.3 0.021 14.8 0.1 2.5 2 1 0 2 2 2 2 RsgA GTPase cobW PF02492.19 BAD84201.1 - 2.6e-06 27.2 0.3 3.4e-05 23.5 0.0 2.0 1 1 1 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain PduV-EutP PF10662.9 BAD84201.1 - 3.1e-06 27.0 0.3 0.0014 18.4 0.0 2.2 2 0 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation Roc PF08477.13 BAD84201.1 - 7.1e-06 26.2 0.2 0.0065 16.7 0.1 2.2 2 0 0 2 2 2 2 Ras of Complex, Roc, domain of DAPkinase MMR_HSR1_Xtn PF16897.5 BAD84201.1 - 3.4e-05 23.8 0.2 5.3e-05 23.2 0.2 1.3 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain Arf PF00025.21 BAD84201.1 - 3.7e-05 23.3 0.8 0.018 14.5 0.1 2.1 2 0 0 2 2 2 2 ADP-ribosylation factor family Septin PF00735.18 BAD84201.1 - 0.0012 18.2 2.2 0.089 12.1 0.1 2.2 1 1 1 2 2 2 2 Septin Ras PF00071.22 BAD84201.1 - 0.0019 17.8 0.2 0.03 13.9 0.2 2.2 1 1 0 1 1 1 1 Ras family GBP PF02263.19 BAD84201.1 - 0.0037 16.6 0.0 0.0084 15.4 0.0 1.6 1 0 0 1 1 1 1 Guanylate-binding protein, N-terminal domain AAA_28 PF13521.6 BAD84201.1 - 0.025 14.8 0.1 0.06 13.6 0.1 1.7 1 0 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.17 BAD84201.1 - 0.035 13.9 0.3 1.5 8.6 0.1 2.6 2 1 0 2 2 2 0 Conserved hypothetical ATP binding protein NOG1 PF06858.14 BAD84201.1 - 0.059 13.2 2.3 0.13 12.0 0.5 2.4 2 1 0 2 2 2 0 Nucleolar GTP-binding protein 1 (NOG1) AIG1 PF04548.16 BAD84201.1 - 0.06 12.7 0.2 0.11 11.7 0.2 1.6 1 1 0 1 1 1 0 AIG1 family AAA_22 PF13401.6 BAD84201.1 - 0.068 13.5 0.3 0.42 10.9 0.3 2.0 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 BAD84201.1 - 0.08 12.7 0.1 0.15 11.8 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain ABC_tran PF00005.27 BAD84201.1 - 0.1 13.1 1.3 0.13 12.7 1.3 1.6 1 1 0 1 1 1 0 ABC transporter PB1 PF00564.24 BAD84201.1 - 0.16 11.9 0.1 0.36 10.8 0.0 1.6 2 0 0 2 2 1 0 PB1 domain PrmC_N PF17827.1 BAD84201.1 - 0.29 11.8 1.5 1 10.0 0.4 2.3 2 1 1 3 3 2 0 PrmC N-terminal domain HD_3 PF13023.6 BAD84203.1 - 3.2e-33 115.0 0.0 3.8e-33 114.7 0.0 1.1 1 0 0 1 1 1 1 HD domain HD_2 PF12917.7 BAD84203.1 - 1.8e-19 70.2 0.0 2.5e-19 69.7 0.0 1.2 1 0 0 1 1 1 1 HD containing hydrolase-like enzyme HD PF01966.22 BAD84203.1 - 3.5e-11 43.4 0.1 1.2e-10 41.7 0.1 1.8 1 1 0 1 1 1 1 HD domain HDOD PF08668.12 BAD84203.1 - 0.0001 21.9 0.0 0.00015 21.3 0.0 1.2 1 0 0 1 1 1 1 HDOD domain SBP_bac_11 PF13531.6 BAD84204.1 - 2.8e-32 112.3 0.0 3.6e-32 112.0 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 BAD84204.1 - 2.7e-14 53.9 0.4 5.9e-14 52.7 0.4 1.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 BAD84204.1 - 0.0031 17.4 0.2 0.027 14.3 0.2 2.2 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 BAD84204.1 - 0.021 14.2 0.0 0.073 12.5 0.0 1.8 2 0 0 2 2 2 0 Bacterial extracellular solute-binding protein DUF4969 PF16339.5 BAD84204.1 - 0.024 15.0 0.1 0.056 13.8 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4969) PIN PF01850.21 BAD84205.1 - 1.6e-25 90.0 0.6 2.3e-25 89.5 0.6 1.3 1 1 0 1 1 1 1 PIN domain PIN_12 PF16289.5 BAD84205.1 - 0.027 15.0 0.0 0.034 14.6 0.0 1.3 1 1 0 1 1 1 0 PIN domain DUF2540 PF10802.8 BAD84205.1 - 0.052 13.6 1.0 0.082 13.0 1.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2540) MraZ PF02381.18 BAD84206.1 - 9e-06 25.6 0.9 3.4e-05 23.7 0.9 1.9 1 1 0 1 1 1 1 MraZ protein, putative antitoxin-like MazE_antitoxin PF04014.18 BAD84206.1 - 0.00076 19.3 1.9 0.00086 19.2 0.8 1.7 1 1 1 2 2 2 1 Antidote-toxin recognition MazE, bacterial antitoxin BPD_transp_1 PF00528.22 BAD84207.1 - 6.1e-21 75.0 11.3 6.1e-21 75.0 11.3 1.9 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component AAA_15 PF13175.6 BAD84208.1 - 4.9e-23 82.4 4.5 4.5e-12 46.4 1.6 2.2 1 1 0 2 2 2 2 AAA ATPase domain AAA_21 PF13304.6 BAD84208.1 - 8.5e-17 61.9 1.5 1.7e-15 57.7 1.5 2.2 1 1 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system DUF2813 PF11398.8 BAD84208.1 - 2.6e-08 33.5 1.0 1.5e-07 31.0 0.7 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF2813) AAA_23 PF13476.6 BAD84208.1 - 1e-07 32.6 1.3 2.7e-07 31.3 1.1 1.7 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 BAD84208.1 - 1.3e-05 24.8 1.9 2.4e-05 23.9 1.9 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_27 PF13514.6 BAD84208.1 - 0.0013 18.4 0.1 0.0028 17.3 0.1 1.6 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 BAD84208.1 - 0.0027 17.4 0.1 0.0062 16.3 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_13 PF13166.6 BAD84208.1 - 0.035 12.8 0.2 0.19 10.3 0.1 1.9 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.27 BAD84208.1 - 0.038 14.5 0.0 0.073 13.6 0.0 1.5 1 0 0 1 1 1 0 ABC transporter MMR_HSR1 PF01926.23 BAD84208.1 - 0.073 13.2 0.2 0.21 11.7 0.2 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase DUF3226 PF11536.8 BAD84209.1 - 8.4e-112 372.6 0.8 9.5e-112 372.5 0.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3226) Wtap PF17098.5 BAD84209.1 - 0.074 13.0 0.0 2.1 8.3 0.1 2.6 3 0 0 3 3 3 0 WTAP/Mum2p family ABC_tran PF00005.27 BAD84210.1 - 2.5e-34 118.7 0.0 7e-34 117.3 0.0 1.7 3 0 0 3 3 2 1 ABC transporter SMC_N PF02463.19 BAD84210.1 - 0.00014 21.4 0.0 0.059 12.8 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 BAD84210.1 - 0.00018 21.5 1.0 0.14 12.0 0.1 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SbcCD_C PF13558.6 BAD84210.1 - 0.00029 21.0 0.1 0.0065 16.7 0.1 2.5 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_16 PF13191.6 BAD84210.1 - 0.0017 18.8 0.0 0.0029 18.0 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 BAD84210.1 - 0.0023 17.6 0.0 0.0042 16.8 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 BAD84210.1 - 0.0068 16.9 0.0 0.011 16.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain T2SSE PF00437.20 BAD84210.1 - 0.015 14.4 0.0 0.024 13.7 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein CysA_C_terminal PF17850.1 BAD84210.1 - 0.018 15.6 0.2 0.056 14.0 0.2 1.9 1 0 0 1 1 1 0 CysA C-terminal regulatory domain AAA_25 PF13481.6 BAD84210.1 - 0.028 14.0 0.0 8.2 5.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 BAD84210.1 - 0.031 14.0 0.0 0.081 12.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.25 BAD84210.1 - 0.042 13.5 0.0 0.07 12.8 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Mg_chelatase PF01078.21 BAD84210.1 - 0.057 12.8 0.0 0.091 12.1 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI TOBE_2 PF08402.10 BAD84210.1 - 0.062 13.5 0.1 0.75 10.0 0.0 2.3 2 0 0 2 2 2 0 TOBE domain RsgA_GTPase PF03193.16 BAD84210.1 - 0.063 13.2 0.0 0.17 11.8 0.0 1.6 2 0 0 2 2 2 0 RsgA GTPase IstB_IS21 PF01695.17 BAD84210.1 - 0.082 12.6 0.0 0.16 11.6 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein OB_MalK PF17912.1 BAD84210.1 - 0.09 13.6 0.5 0.35 11.7 0.5 2.1 1 0 0 1 1 1 0 MalK OB fold domain AAA_5 PF07728.14 BAD84210.1 - 0.1 12.6 0.0 0.47 10.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 BAD84210.1 - 0.11 12.8 0.1 0.32 11.3 0.1 1.8 1 1 0 1 1 1 0 AAA domain DUF815 PF05673.13 BAD84210.1 - 0.13 11.5 0.0 2.2 7.4 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF815) Band_7_1 PF13421.6 BAD84211.1 - 1.7e-37 129.2 0.1 2.4e-37 128.7 0.1 1.2 1 0 0 1 1 1 1 SPFH domain-Band 7 family Band_7 PF01145.25 BAD84211.1 - 4.6e-20 72.4 0.1 4.6e-20 72.4 0.1 1.6 2 0 0 2 2 1 1 SPFH domain / Band 7 family zinc_ribbon_2 PF13240.6 BAD84211.1 - 8.6e-14 50.7 12.2 2.5e-09 36.6 4.5 2.6 2 0 0 2 2 2 2 zinc-ribbon domain zf-ribbon_3 PF13248.6 BAD84211.1 - 5.4e-12 44.7 12.5 9.4e-09 34.4 3.7 2.4 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.7 BAD84211.1 - 2.1e-10 40.4 5.9 5.7e-10 39.1 5.7 1.7 1 1 0 1 1 1 1 Double zinc ribbon zinc_ribbon_15 PF17032.5 BAD84211.1 - 3.5e-05 24.5 5.1 0.00032 21.4 0.6 2.3 2 0 0 2 2 2 1 zinc-ribbon family UPF0547 PF10571.9 BAD84211.1 - 4e-05 23.6 18.0 0.0034 17.4 7.2 2.4 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 zf-NADH-PPase PF09297.11 BAD84211.1 - 9.2e-05 22.0 6.7 0.12 12.0 0.6 3.5 3 0 0 3 3 3 2 NADH pyrophosphatase zinc ribbon domain Nudix_N_2 PF14803.6 BAD84211.1 - 0.033 14.1 9.7 2 8.4 0.8 3.3 3 0 0 3 3 3 0 Nudix N-terminal zf-CHCC PF10276.9 BAD84211.1 - 0.27 11.3 6.8 4.1 7.5 0.3 3.2 3 0 0 3 3 3 0 Zinc-finger domain DNA_ligase_ZBD PF03119.16 BAD84211.1 - 0.39 10.8 11.5 1.4 9.0 0.2 3.6 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain DHHC PF01529.20 BAD84211.1 - 0.51 10.4 2.1 0.97 9.5 0.7 2.0 1 1 1 2 2 2 0 DHHC palmitoyltransferase DUF2116 PF09889.9 BAD84211.1 - 0.71 9.9 7.3 3.4 7.7 3.2 2.4 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) PknG_rubred PF16919.5 BAD84211.1 - 1.3 9.2 11.2 5.8 7.1 2.5 4.0 2 2 1 4 4 4 0 Protein kinase G rubredoxin domain DUF3268 PF11672.8 BAD84211.1 - 2.2 8.6 4.3 6.4 7.1 0.9 2.4 2 0 0 2 2 2 0 zinc-finger-containing domain Zn-ribbon_8 PF09723.10 BAD84211.1 - 2.7 8.2 10.6 10 6.3 3.8 2.9 1 1 2 3 3 3 0 Zinc ribbon domain DUF2256 PF10013.9 BAD84211.1 - 3.2 7.9 7.0 17 5.6 0.2 3.2 2 1 1 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2256) Rad50_zn_hook PF04423.14 BAD84211.1 - 3.8 7.4 6.9 25 4.8 0.7 3.1 2 1 1 3 3 3 0 Rad50 zinc hook motif zf_UBZ PF18439.1 BAD84211.1 - 4.3 7.0 6.0 27 4.5 0.1 3.1 2 1 1 3 3 3 0 Ubiquitin-Binding Zinc Finger zinc-ribbons_6 PF07191.12 BAD84211.1 - 4.8 7.2 7.3 79 3.3 7.3 2.4 1 1 0 1 1 1 0 zinc-ribbons Prok-RING_1 PF14446.6 BAD84211.1 - 5.1 7.1 7.7 1.4e+02 2.5 7.7 2.3 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 zf-IS66 PF13005.7 BAD84211.1 - 6.2 7.3 9.8 28 5.2 0.6 3.8 2 1 1 3 3 3 0 zinc-finger binding domain of transposase IS66 zf-C3HC4_3 PF13920.6 BAD84211.1 - 6.9 6.6 9.3 72 3.4 0.2 2.7 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) Cytokin-bind PF09265.10 BAD84212.1 - 0.038 13.4 0.1 0.045 13.1 0.1 1.1 1 0 0 1 1 1 0 Cytokinin dehydrogenase 1, FAD and cytokinin binding zinc_ribbon_4 PF13717.6 BAD84213.1 - 1.9e-05 24.5 1.4 0.00011 22.0 1.6 2.0 1 1 1 2 2 2 2 zinc-ribbon domain zinc_ribbon_5 PF13719.6 BAD84213.1 - 4.5e-05 23.1 0.7 0.1 12.4 0.0 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zf-C2H2_4 PF13894.6 BAD84213.1 - 0.0089 16.8 1.8 4 8.5 0.2 2.5 2 0 0 2 2 2 1 C2H2-type zinc finger Prok-RING_1 PF14446.6 BAD84213.1 - 0.0094 15.9 0.7 0.015 15.2 0.7 1.3 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 zf-CHCC PF10276.9 BAD84213.1 - 0.014 15.5 0.6 0.56 10.3 0.2 2.3 2 0 0 2 2 2 0 Zinc-finger domain HypA PF01155.19 BAD84213.1 - 0.018 15.1 0.6 0.034 14.2 0.6 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-C2H2_12 PF18112.1 BAD84213.1 - 0.027 14.9 2.3 1.8 9.1 0.3 2.5 2 0 0 2 2 2 0 Autophagy receptor zinc finger-C2H2 domain zf-C2H2_9 PF16293.5 BAD84213.1 - 0.033 14.0 0.1 1.4 8.8 0.0 2.4 1 1 1 2 2 2 0 C2H2 type zinc-finger (1 copy) zf-C2H2 PF00096.26 BAD84213.1 - 0.05 14.1 2.1 5.9 7.6 0.3 2.5 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 BAD84213.1 - 0.07 13.6 3.3 8 7.1 0.2 2.5 2 0 0 2 2 2 0 Zinc-finger double domain CpXC PF14353.6 BAD84213.1 - 0.15 12.1 2.6 1 9.4 0.1 2.3 1 1 1 2 2 2 0 CpXC protein zf-ribbon_3 PF13248.6 BAD84213.1 - 0.2 11.1 4.4 0.53 9.8 0.2 2.1 1 1 1 2 2 2 0 zinc-ribbon domain Cys_rich_CPXG PF14255.6 BAD84213.1 - 0.2 11.5 1.5 1.7 8.6 0.1 2.3 2 0 0 2 2 2 0 Cysteine-rich CPXCG zf-Di19 PF05605.12 BAD84213.1 - 0.27 11.6 7.0 2.1 8.7 0.7 2.3 1 1 1 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding Rad50_zn_hook PF04423.14 BAD84213.1 - 0.28 11.1 1.5 22 5.0 0.1 3.0 3 0 0 3 3 3 0 Rad50 zinc hook motif TF_Zn_Ribbon PF08271.12 BAD84213.1 - 0.32 10.5 3.4 1.1 8.9 3.4 1.9 1 1 0 1 1 1 0 TFIIB zinc-binding zf-C2H2_6 PF13912.6 BAD84213.1 - 0.4 10.8 4.3 12 6.0 0.2 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger zinc_ribbon_9 PF14369.6 BAD84213.1 - 1.1 9.6 3.7 6.4 7.1 4.0 2.0 1 1 1 2 2 2 0 zinc-ribbon DZR PF12773.7 BAD84214.1 - 0.0037 17.2 0.2 0.0087 16.1 0.2 1.5 1 0 0 1 1 1 1 Double zinc ribbon zf-NADH-PPase PF09297.11 BAD84214.1 - 0.011 15.4 0.5 0.02 14.6 0.5 1.4 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain zf-Mss51 PF13824.6 BAD84214.1 - 0.015 15.3 4.0 2.1 8.5 1.2 2.6 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-ribbon_3 PF13248.6 BAD84214.1 - 0.017 14.5 4.0 0.093 12.2 4.0 2.1 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 BAD84214.1 - 0.022 14.5 5.5 0.097 12.4 4.7 2.2 1 1 1 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 BAD84214.1 - 0.035 14.2 2.1 0.082 13.0 2.1 1.6 1 0 0 1 1 1 0 Zinc ribbon domain Prok-RING_1 PF14446.6 BAD84214.1 - 0.049 13.6 0.3 0.049 13.6 0.3 1.7 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 DUF572 PF04502.13 BAD84214.1 - 0.079 12.6 0.9 0.31 10.6 0.1 1.9 2 0 0 2 2 2 0 Family of unknown function (DUF572) HypA PF01155.19 BAD84214.1 - 0.11 12.5 0.2 0.29 11.2 0.2 1.7 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Mu-like_Com PF10122.9 BAD84214.1 - 0.11 11.9 1.3 4.9 6.7 0.1 2.7 1 1 1 2 2 2 0 Mu-like prophage protein Com Vps36-NZF-N PF16988.5 BAD84214.1 - 0.48 9.8 2.3 0.54 9.7 0.2 2.0 1 1 1 2 2 2 0 Vacuolar protein sorting 36 NZF-N zinc-finger domain DUF1451 PF07295.11 BAD84214.1 - 1 9.4 6.2 0.21 11.6 0.4 2.4 3 0 0 3 3 3 0 Zinc-ribbon containing domain TF_Zn_Ribbon PF08271.12 BAD84214.1 - 2.6 7.6 4.3 25 4.5 0.2 2.1 1 1 0 2 2 2 0 TFIIB zinc-binding HAD_2 PF13419.6 BAD84215.1 - 5.5e-26 91.7 0.0 6.6e-26 91.5 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 BAD84215.1 - 1.6e-12 48.2 0.2 1.9e-11 44.7 0.2 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 BAD84215.1 - 1.4e-08 34.7 0.0 3.6e-08 33.4 0.0 1.7 1 1 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 BAD84215.1 - 3.6e-05 24.3 0.0 4.4e-05 24.0 0.0 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase NIF PF03031.18 BAD84215.1 - 0.0013 18.5 0.2 7.1 6.4 0.0 3.0 1 1 2 3 3 3 2 NLI interacting factor-like phosphatase Hydrolase_3 PF08282.12 BAD84215.1 - 0.1 12.3 0.0 0.62 9.7 0.0 2.1 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase TrmO PF01980.16 BAD84216.1 - 4e-25 88.3 0.0 7e-25 87.6 0.0 1.3 1 0 0 1 1 1 1 tRNA-methyltransferase O AdoHcyase PF05221.17 BAD84217.1 - 1.1e-66 225.1 0.0 1.5e-35 122.8 0.0 2.0 1 1 1 2 2 2 2 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.21 BAD84217.1 - 9.9e-51 172.0 0.1 1.6e-50 171.3 0.1 1.3 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.19 BAD84217.1 - 2.3e-09 36.9 0.0 5.2e-09 35.7 0.0 1.6 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 BAD84217.1 - 5.4e-07 29.3 0.1 1.1e-06 28.3 0.1 1.5 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain 3HCDH_N PF02737.18 BAD84217.1 - 0.0026 17.7 2.5 0.22 11.4 0.7 2.5 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain THF_DHG_CYH_C PF02882.19 BAD84217.1 - 0.005 16.2 0.4 0.034 13.5 0.4 2.0 1 1 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain TrkA_N PF02254.18 BAD84217.1 - 0.022 15.0 0.5 0.05 13.9 0.1 1.8 2 0 0 2 2 2 0 TrkA-N domain Pyr_redox_2 PF07992.14 BAD84217.1 - 0.028 13.6 0.1 0.057 12.6 0.1 1.5 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 BAD84217.1 - 0.24 10.7 3.5 0.2 10.9 1.6 1.8 2 1 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_RFF PF18321.1 BAD84217.1 - 0.36 11.3 2.0 1.2 9.7 0.7 2.3 2 0 0 2 2 2 0 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain Lactamase_B PF00753.27 BAD84218.1 - 7e-10 39.2 0.5 1.3e-09 38.4 0.5 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 BAD84218.1 - 0.15 11.5 0.0 0.21 11.0 0.0 1.4 1 1 0 1 1 1 0 Beta-lactamase superfamily domain Cyclase PF04199.13 BAD84219.1 - 3.1e-23 82.5 0.0 4.4e-23 82.0 0.0 1.2 1 0 0 1 1 1 1 Putative cyclase NPP PF08384.10 BAD84219.1 - 0.17 11.9 0.0 0.4 10.8 0.0 1.5 1 0 0 1 1 1 0 Pro-opiomelanocortin, N-terminal region Rpr2 PF04032.16 BAD84220.1 - 2.9e-18 65.9 0.1 5.2e-18 65.1 0.1 1.4 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain NMD3 PF04981.13 BAD84220.1 - 0.025 14.1 0.4 0.036 13.5 0.4 1.4 1 1 0 1 1 1 0 NMD3 family DZR PF12773.7 BAD84220.1 - 0.066 13.3 0.1 0.11 12.5 0.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon DUF4674 PF15719.5 BAD84220.1 - 0.16 12.0 3.6 1.3 9.0 3.7 2.2 1 1 0 1 1 1 0 Domain of unknown function (DUF4674) DUF4294 PF14127.6 BAD84220.1 - 0.68 9.9 3.5 0.36 10.7 1.2 1.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4294) NPV_P10 PF05531.12 BAD84222.1 - 0.0015 18.9 4.2 0.18 12.3 0.2 4.6 1 1 2 4 4 4 1 Nucleopolyhedrovirus P10 protein ZapB PF06005.12 BAD84222.1 - 0.0052 17.2 7.1 0.0052 17.2 7.1 5.8 2 1 1 3 3 2 1 Cell division protein ZapB Cep57_CLD_2 PF14197.6 BAD84222.1 - 0.013 15.5 6.1 0.013 15.5 6.1 5.2 3 2 1 4 4 4 0 Centrosome localisation domain of PPC89 STAT_int PF02865.17 BAD84222.1 - 0.015 15.8 1.6 0.015 15.8 1.6 3.1 2 1 1 3 3 3 0 STAT protein, protein interaction domain TPR_MLP1_2 PF07926.12 BAD84222.1 - 0.019 15.0 0.5 0.019 15.0 0.5 4.2 2 1 1 3 3 3 0 TPR/MLP1/MLP2-like protein DUF4140 PF13600.6 BAD84222.1 - 0.027 14.9 21.6 1.3 9.5 3.7 4.7 2 2 2 4 4 4 0 N-terminal domain of unknown function (DUF4140) bZIP_1 PF00170.21 BAD84222.1 - 0.029 14.5 1.9 0.029 14.5 1.9 6.8 3 2 3 6 6 5 0 bZIP transcription factor DUF1664 PF07889.12 BAD84222.1 - 0.042 13.9 0.4 0.042 13.9 0.4 4.0 1 1 3 4 4 4 0 Protein of unknown function (DUF1664) DUF2937 PF11157.8 BAD84222.1 - 0.23 11.2 2.0 0.78 9.4 0.3 2.6 1 1 2 3 3 3 0 Protein of unknown function (DUF2937) FlgM PF04316.13 BAD84222.1 - 0.27 11.6 2.9 0.53 10.7 0.2 2.9 2 0 0 2 2 2 0 Anti-sigma-28 factor, FlgM HU-CCDC81_bac_2 PF18175.1 BAD84222.1 - 0.29 11.0 2.8 3.6 7.5 0.6 3.2 2 0 0 2 2 2 0 CCDC81-like prokaryotic HU domain 2 Seadorna_VP6 PF07407.11 BAD84222.1 - 0.88 8.5 12.5 0.34 9.8 1.4 2.2 2 0 0 2 2 2 0 Seadornavirus VP6 protein NRBF2 PF08961.10 BAD84222.1 - 1.2 8.8 19.4 0.042 13.4 2.3 2.9 2 1 0 2 2 2 0 Nuclear receptor-binding factor 2, autophagy regulator YabA PF06156.13 BAD84222.1 - 1.5 9.5 40.0 0.096 13.3 4.9 5.2 1 1 4 5 5 5 0 Initiation control protein YabA FlaC_arch PF05377.11 BAD84222.1 - 2.3 8.7 33.8 0.092 13.2 1.4 6.8 3 2 2 5 5 4 0 Flagella accessory protein C (FlaC) DASH_Dam1 PF08653.10 BAD84222.1 - 3.3 7.6 12.7 1 9.2 0.1 5.2 6 0 0 6 6 6 0 DASH complex subunit Dam1 PRKG1_interact PF15898.5 BAD84222.1 - 4 8.4 40.9 0.53 11.2 15.2 4.4 1 1 3 4 4 4 0 cGMP-dependent protein kinase interacting domain PikAIV_N PF18605.1 BAD84222.1 - 4.1 7.1 16.6 0.038 13.6 5.0 3.3 3 0 0 3 3 3 0 Narbonolide/10-deoxymethynolide synthase PikA4 N-terminal domain Cnn_1N PF07989.11 BAD84222.1 - 4.8 7.4 38.8 1.9 8.7 1.9 6.1 3 1 1 4 4 3 0 Centrosomin N-terminal motif 1 DUF1848 PF08902.11 BAD84222.1 - 5.3 6.7 7.5 1.4e+02 2.0 7.2 2.4 1 1 0 1 1 1 0 Domain of unknown function (DUF1848) SepSecS PF05889.13 BAD84222.1 - 8.1 5.0 9.4 0.19 10.4 0.2 2.4 1 1 1 2 2 2 0 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS HEAT_UF PF18817.1 BAD84223.1 - 6.9e-26 90.2 1.2 6.9e-26 90.2 1.2 3.3 3 1 1 4 4 4 1 Repeat of uncharacterized protein PH0542 HEAT_2 PF13646.6 BAD84223.1 - 2.3e-11 43.9 1.2 1.4e-06 28.6 0.1 2.9 2 1 1 3 3 3 2 HEAT repeats HEAT PF02985.22 BAD84223.1 - 1e-09 37.8 0.2 8e-05 22.6 0.0 3.7 3 0 0 3 3 3 2 HEAT repeat Adaptin_N PF01602.20 BAD84223.1 - 2e-09 36.6 1.7 4.6e-09 35.4 1.7 1.5 1 1 0 1 1 1 1 Adaptin N terminal region Cnd1 PF12717.7 BAD84223.1 - 2.2e-07 31.0 3.7 0.56 10.2 0.1 3.1 2 1 0 2 2 2 1 non-SMC mitotic condensation complex subunit 1 HEAT_EZ PF13513.6 BAD84223.1 - 3.5e-07 30.6 1.3 0.00095 19.6 0.0 3.9 3 1 2 5 5 5 1 HEAT-like repeat Proteasom_PSMB PF10508.9 BAD84223.1 - 7.8e-07 28.0 0.9 0.015 13.9 0.1 2.2 1 1 0 2 2 2 2 Proteasome non-ATPase 26S subunit Nipped-B_C PF12830.7 BAD84223.1 - 4.3e-05 23.5 0.0 0.00079 19.4 0.0 2.1 2 0 0 2 2 2 1 Sister chromatid cohesion C-terminus DUF5578 PF17741.1 BAD84223.1 - 0.0014 18.1 2.2 0.094 12.1 0.0 2.2 2 0 0 2 2 2 2 Family of unknown function (DUF5578) RTP1_C1 PF10363.9 BAD84223.1 - 0.0026 17.9 0.6 0.29 11.3 0.0 2.8 2 1 0 2 2 2 1 Required for nuclear transport of RNA pol II C-terminus 1 RIX1 PF08167.12 BAD84223.1 - 0.024 14.4 0.0 0.15 11.8 0.0 2.1 2 0 0 2 2 2 0 rRNA processing/ribosome biogenesis Vac14_Fab1_bd PF12755.7 BAD84223.1 - 0.027 15.1 0.2 0.12 13.0 0.0 2.2 2 2 0 2 2 2 0 Vacuolar 14 Fab1-binding region DUF3919 PF13057.6 BAD84223.1 - 0.055 13.0 0.2 0.09 12.3 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3919) RasGEF_N_2 PF14663.6 BAD84223.1 - 0.081 13.3 1.4 0.24 11.8 0.2 2.2 2 0 0 2 2 2 0 Rapamycin-insensitive companion of mTOR RasGEF_N domain PQQ_3 PF13570.6 BAD84224.1 - 9.3e-13 48.2 31.3 1.5e-07 31.6 0.0 8.2 6 2 0 6 6 6 4 PQQ-like domain PQQ_2 PF13360.6 BAD84224.1 - 2.1e-11 43.8 0.5 1.9e-06 27.6 0.1 3.4 1 1 2 3 3 3 3 PQQ-like domain PQQ PF01011.21 BAD84224.1 - 0.0045 16.8 7.0 15 5.8 0.0 6.5 8 0 0 8 8 8 1 PQQ enzyme repeat LVIVD PF08309.11 BAD84224.1 - 0.039 13.3 5.3 0.047 13.0 0.4 2.5 2 0 0 2 2 2 0 LVIVD repeat DUF1495 PF07381.11 BAD84225.1 - 1.9e-32 110.9 0.7 2.2e-32 110.7 0.7 1.0 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HTH_IclR PF09339.10 BAD84225.1 - 0.056 13.3 0.0 0.65 9.9 0.0 2.3 2 0 0 2 2 2 0 IclR helix-turn-helix domain DUF505 PF04458.12 BAD84225.1 - 0.12 10.8 0.1 0.18 10.2 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF505) Methyltransf_11 PF08241.12 BAD84226.1 - 1.1e-11 45.3 0.0 1.1e-10 42.0 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 BAD84226.1 - 2.7e-11 44.1 0.0 3.5e-10 40.5 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 BAD84226.1 - 1.6e-10 41.5 0.0 8e-10 39.3 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 BAD84226.1 - 1.8e-10 40.9 0.0 3.1e-10 40.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 BAD84226.1 - 1.9e-08 34.3 0.0 3.4e-08 33.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 BAD84226.1 - 5.9e-08 32.3 0.0 8.9e-08 31.7 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family PCMT PF01135.19 BAD84226.1 - 1.5e-05 24.8 0.0 2.4e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) TehB PF03848.14 BAD84226.1 - 0.00091 18.7 0.0 0.0014 18.1 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB CMAS PF02353.20 BAD84226.1 - 0.0038 16.5 0.0 0.047 13.0 0.0 2.1 2 0 0 2 2 2 1 Mycolic acid cyclopropane synthetase MetW PF07021.12 BAD84226.1 - 0.014 15.0 0.0 0.055 13.1 0.0 1.9 1 1 0 1 1 1 0 Methionine biosynthesis protein MetW NNMT_PNMT_TEMT PF01234.17 BAD84226.1 - 0.085 12.0 0.0 0.18 11.0 0.0 1.5 2 0 0 2 2 2 0 NNMT/PNMT/TEMT family NodS PF05401.11 BAD84226.1 - 0.11 12.1 0.0 0.16 11.5 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) MTS PF05175.14 BAD84226.1 - 0.18 11.4 0.0 0.39 10.2 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase small domain Arch_flagellin PF01917.16 BAD84227.1 - 2.9e-46 157.7 12.5 2.4e-45 154.6 12.5 1.9 1 1 0 1 1 1 1 Archaebacterial flagellin Arch_flagellin PF01917.16 BAD84228.1 - 2.6e-42 144.8 22.8 1.5e-34 119.6 6.8 3.5 1 1 0 2 2 2 2 Archaebacterial flagellin CarboxypepD_reg PF13620.6 BAD84228.1 - 0.047 14.0 5.2 1.1 9.5 0.3 3.8 3 0 0 3 3 3 0 Carboxypeptidase regulatory-like domain Glyco_hydro_79C PF16862.5 BAD84228.1 - 1.3 9.9 9.3 3.3 8.7 0.6 4.5 4 1 1 5 5 5 0 Glycosyl hydrolase family 79 C-terminal beta domain Arch_flagellin PF01917.16 BAD84229.1 - 3.9e-47 160.5 3.6 5.3e-47 160.1 3.6 1.2 1 0 0 1 1 1 1 Archaebacterial flagellin EF-hand_6 PF13405.6 BAD84229.1 - 0.12 12.3 0.3 17 5.7 0.0 2.8 2 0 0 2 2 2 0 EF-hand domain Arch_flagellin PF01917.16 BAD84230.1 - 2e-49 168.0 3.7 2.2e-49 167.8 3.7 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin DUF4330 PF14221.6 BAD84230.1 - 0.058 13.6 0.3 0.081 13.1 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4330) Arch_flagellin PF01917.16 BAD84231.1 - 2.9e-40 138.1 0.3 7e-40 136.9 0.3 1.6 1 1 0 1 1 1 1 Archaebacterial flagellin FlaC_arch PF05377.11 BAD84232.1 - 2.1e-22 79.3 13.4 1.8e-20 73.0 1.9 3.1 3 0 0 3 3 3 2 Flagella accessory protein C (FlaC) EzrA PF06160.12 BAD84232.1 - 4e-05 22.0 12.4 0.00083 17.7 2.9 2.1 1 1 1 2 2 2 2 Septation ring formation regulator, EzrA Sec34 PF04136.15 BAD84232.1 - 4.6e-05 23.3 3.1 0.00011 22.1 1.6 1.9 1 1 1 2 2 2 1 Sec34-like family Spc7 PF08317.11 BAD84232.1 - 9.6e-05 21.4 15.1 0.0065 15.4 8.0 2.0 1 1 1 2 2 2 2 Spc7 kinetochore protein DUF1664 PF07889.12 BAD84232.1 - 0.00028 20.9 9.1 0.003 17.6 6.3 2.5 1 1 2 3 3 3 3 Protein of unknown function (DUF1664) Laminin_II PF06009.12 BAD84232.1 - 0.00042 20.3 6.8 0.00078 19.5 6.8 1.5 1 1 0 1 1 1 1 Laminin Domain II DUF4618 PF15397.6 BAD84232.1 - 0.0012 18.3 11.0 0.19 11.1 0.5 2.3 1 1 1 2 2 2 2 Domain of unknown function (DUF4618) Baculo_PEP_C PF04513.12 BAD84232.1 - 0.0012 18.8 3.7 0.0028 17.7 3.7 1.5 1 1 0 1 1 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus BLOC1_2 PF10046.9 BAD84232.1 - 0.0015 18.8 12.4 0.13 12.5 6.0 2.5 1 1 1 2 2 2 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 Phage_GPO PF05929.11 BAD84232.1 - 0.0017 18.1 5.1 0.24 11.0 0.2 2.0 1 1 1 2 2 2 2 Phage capsid scaffolding protein (GPO) serine peptidase Cep57_MT_bd PF06657.13 BAD84232.1 - 0.0018 18.7 4.9 0.12 12.8 1.6 2.5 2 0 0 2 2 2 1 Centrosome microtubule-binding domain of Cep57 LPP PF04728.13 BAD84232.1 - 0.0024 18.2 8.1 2.3 8.7 0.8 3.7 1 1 2 3 3 3 0 Lipoprotein leucine-zipper CENP-F_leu_zip PF10473.9 BAD84232.1 - 0.0032 17.5 17.6 0.28 11.2 11.7 2.1 1 1 1 2 2 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 HemX PF04375.14 BAD84232.1 - 0.0034 16.7 6.9 0.0064 15.8 1.4 2.0 1 1 1 2 2 2 1 HemX, putative uroporphyrinogen-III C-methyltransferase GAS PF13851.6 BAD84232.1 - 0.0038 16.6 13.3 0.012 15.0 6.5 2.1 1 1 1 2 2 2 1 Growth-arrest specific micro-tubule binding AAA_13 PF13166.6 BAD84232.1 - 0.0046 15.7 5.8 0.0064 15.2 5.8 1.2 1 0 0 1 1 1 1 AAA domain WEMBL PF05701.11 BAD84232.1 - 0.0053 15.5 11.1 0.024 13.4 11.0 1.7 1 1 0 1 1 1 1 Weak chloroplast movement under blue light Seryl_tRNA_N PF02403.22 BAD84232.1 - 0.0081 16.4 15.4 0.55 10.5 1.7 2.3 1 1 1 2 2 2 2 Seryl-tRNA synthetase N-terminal domain MscS_porin PF12795.7 BAD84232.1 - 0.0089 15.6 11.7 0.13 11.8 11.7 2.0 1 1 0 1 1 1 1 Mechanosensitive ion channel porin domain DUF948 PF06103.11 BAD84232.1 - 0.015 15.6 2.3 0.11 12.8 0.2 2.4 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) DivIC PF04977.15 BAD84232.1 - 0.015 15.1 11.9 0.2 11.4 0.5 3.1 2 1 1 3 3 3 0 Septum formation initiator Tektin PF03148.14 BAD84232.1 - 0.015 14.1 11.0 0.094 11.4 6.5 2.0 1 1 1 2 2 2 0 Tektin family KASH_CCD PF14662.6 BAD84232.1 - 0.015 15.1 15.4 0.022 14.6 15.4 1.3 1 0 0 1 1 1 0 Coiled-coil region of CCDC155 or KASH TPR_MLP1_2 PF07926.12 BAD84232.1 - 0.015 15.3 9.9 0.036 14.1 1.8 2.5 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein ADIP PF11559.8 BAD84232.1 - 0.016 15.3 2.6 0.016 15.3 2.6 2.1 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding Fez1 PF06818.15 BAD84232.1 - 0.016 15.6 9.6 0.026 15.0 9.6 1.4 1 1 0 1 1 1 0 Fez1 IFT57 PF10498.9 BAD84232.1 - 0.018 14.0 13.0 0.075 12.0 13.0 1.8 1 1 0 1 1 1 0 Intra-flagellar transport protein 57 Fib_alpha PF08702.10 BAD84232.1 - 0.018 15.2 4.2 0.018 15.2 4.2 2.1 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family DUF2730 PF10805.8 BAD84232.1 - 0.018 15.1 10.7 0.35 11.0 5.8 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF2730) CALCOCO1 PF07888.11 BAD84232.1 - 0.02 13.8 11.1 0.05 12.5 11.1 1.5 1 1 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like DHR10 PF18595.1 BAD84232.1 - 0.02 14.9 12.3 0.12 12.5 0.8 2.2 1 1 1 2 2 2 0 Designed helical repeat protein 10 domain Phlebovirus_NSM PF07246.11 BAD84232.1 - 0.024 14.0 6.8 1.6 8.0 6.6 2.0 1 1 0 1 1 1 0 Phlebovirus nonstructural protein NS-M FPP PF05911.11 BAD84232.1 - 0.026 12.7 11.7 0.031 12.5 11.7 1.0 1 0 0 1 1 1 0 Filament-like plant protein, long coiled-coil DUF1192 PF06698.11 BAD84232.1 - 0.027 14.5 8.1 0.27 11.3 0.6 2.9 2 1 1 3 3 2 0 Protein of unknown function (DUF1192) HMMR_N PF15905.5 BAD84232.1 - 0.028 13.9 15.5 0.041 13.4 15.5 1.2 1 0 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal bZIP_1 PF00170.21 BAD84232.1 - 0.031 14.4 14.1 0.17 12.0 0.2 3.3 2 1 2 4 4 4 0 bZIP transcription factor Cnn_1N PF07989.11 BAD84232.1 - 0.033 14.4 15.5 0.14 12.3 0.3 2.9 2 1 0 2 2 2 0 Centrosomin N-terminal motif 1 TMPIT PF07851.13 BAD84232.1 - 0.033 13.4 5.7 0.043 13.1 5.0 1.6 1 1 0 1 1 1 0 TMPIT-like protein MAD PF05557.13 BAD84232.1 - 0.033 12.6 12.7 0.055 11.8 12.3 1.5 1 1 0 1 1 1 0 Mitotic checkpoint protein DUF2203 PF09969.9 BAD84232.1 - 0.041 14.6 7.7 0.067 13.9 1.0 2.2 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) Myc-LZ PF02344.15 BAD84232.1 - 0.042 13.9 0.4 0.042 13.9 0.4 2.4 3 0 0 3 3 1 0 Myc leucine zipper domain DASH_Dam1 PF08653.10 BAD84232.1 - 0.046 13.5 6.7 0.38 10.6 0.2 3.3 3 0 0 3 3 3 0 DASH complex subunit Dam1 SMC_Nse1 PF07574.13 BAD84232.1 - 0.047 13.6 4.9 0.16 11.9 0.3 2.1 1 1 1 2 2 2 0 Nse1 non-SMC component of SMC5-6 complex BRE1 PF08647.11 BAD84232.1 - 0.05 13.7 11.3 0.066 13.3 7.8 2.4 1 1 1 2 2 2 0 BRE1 E3 ubiquitin ligase DASH_Dad2 PF08654.10 BAD84232.1 - 0.054 13.9 6.3 0.56 10.7 5.9 2.6 1 1 0 1 1 1 0 DASH complex subunit Dad2 ATG16 PF08614.11 BAD84232.1 - 0.059 13.6 11.9 0.67 10.1 12.1 1.9 1 1 0 1 1 1 0 Autophagy protein 16 (ATG16) HIP1_clath_bdg PF16515.5 BAD84232.1 - 0.059 14.0 10.5 2.2 9.0 5.3 2.5 1 1 1 2 2 2 0 Clathrin-binding domain of Huntingtin-interacting protein 1 DUF4140 PF13600.6 BAD84232.1 - 0.077 13.4 12.9 1.2 9.6 0.6 3.0 1 1 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) Syntaxin-6_N PF09177.11 BAD84232.1 - 0.08 13.5 10.4 2.6 8.7 2.3 3.0 1 1 2 3 3 3 0 Syntaxin 6, N-terminal FapA PF03961.13 BAD84232.1 - 0.085 11.4 14.0 0.7 8.4 13.3 2.2 1 1 1 2 2 2 0 Flagellar Assembly Protein A LOH1CR12 PF10158.9 BAD84232.1 - 0.089 12.8 4.7 0.47 10.5 0.4 2.2 1 1 1 2 2 2 0 Tumour suppressor protein Nmad5 PF18757.1 BAD84232.1 - 0.096 12.9 4.4 0.94 9.6 4.3 2.2 1 1 0 1 1 1 0 Nucleotide modification associated domain 5 Atg14 PF10186.9 BAD84232.1 - 0.096 11.8 11.7 0.1 11.7 3.7 2.0 1 1 1 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 DUF812 PF05667.11 BAD84232.1 - 0.1 11.4 15.8 0.37 9.6 15.8 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF812) LRS4 PF10422.9 BAD84232.1 - 0.11 12.1 6.7 0.13 11.8 6.7 1.1 1 0 0 1 1 1 0 Monopolin complex subunit LRS4 COG5 PF10392.9 BAD84232.1 - 0.11 12.7 6.7 1.3 9.2 0.8 2.3 1 1 1 2 2 2 0 Golgi transport complex subunit 5 NPV_P10 PF05531.12 BAD84232.1 - 0.12 12.8 10.6 64 4.1 10.6 2.8 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein Prominin PF05478.11 BAD84232.1 - 0.14 10.1 6.7 0.29 9.0 6.7 1.4 1 1 0 1 1 1 0 Prominin AP_endonuc_2 PF01261.24 BAD84232.1 - 0.14 11.6 0.7 2.7 7.4 0.2 2.0 2 0 0 2 2 2 0 Xylose isomerase-like TIM barrel Fmp27_WPPW PF10359.9 BAD84232.1 - 0.17 10.7 7.3 0.27 10.0 6.9 1.6 1 1 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain DUF677 PF05055.12 BAD84232.1 - 0.17 10.8 8.8 0.18 10.6 6.3 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF677) KxDL PF10241.9 BAD84232.1 - 0.18 12.1 7.0 1.2 9.5 0.7 2.5 1 1 1 2 2 2 0 Uncharacterized conserved protein THOC7 PF05615.13 BAD84232.1 - 0.18 12.1 14.3 0.44 10.8 8.7 2.1 1 1 1 2 2 2 0 Tho complex subunit 7 Syntaxin_2 PF14523.6 BAD84232.1 - 0.18 12.2 8.3 0.65 10.4 8.3 1.9 1 1 0 1 1 1 0 Syntaxin-like protein SKA2 PF16740.5 BAD84232.1 - 0.19 11.5 10.4 0.15 11.9 4.9 2.2 1 1 1 2 2 2 0 Spindle and kinetochore-associated protein 2 Prefoldin PF02996.17 BAD84232.1 - 0.23 11.4 12.0 0.2 11.6 0.6 3.2 2 1 1 3 3 3 0 Prefoldin subunit Vps54_N PF10475.9 BAD84232.1 - 0.23 10.7 6.5 0.12 11.6 1.4 2.0 1 1 1 2 2 2 0 Vacuolar-sorting protein 54, of GARP complex Vps53_N PF04100.12 BAD84232.1 - 0.25 10.2 9.3 0.31 10.0 8.4 1.5 1 1 0 1 1 1 0 Vps53-like, N-terminal DUF4407 PF14362.6 BAD84232.1 - 0.26 10.6 4.6 1.6 8.0 4.5 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) YPEB PF14620.6 BAD84232.1 - 0.26 10.6 8.4 6.9 5.9 7.8 2.2 1 1 1 2 2 2 0 YpeB sporulation TolA_bind_tri PF16331.5 BAD84232.1 - 0.28 11.3 16.3 2.8 8.1 0.7 3.1 1 1 1 2 2 2 0 TolA binding protein trimerisation Nsp1_C PF05064.13 BAD84232.1 - 0.29 10.9 9.3 0.052 13.4 2.4 2.6 1 1 2 3 3 3 0 Nsp1-like C-terminal region Bacillus_HBL PF05791.11 BAD84232.1 - 0.31 10.9 7.7 1.3 8.9 7.7 1.9 1 1 0 1 1 1 0 Bacillus haemolytic enterotoxin (HBL) DUF2205 PF10224.9 BAD84232.1 - 0.31 11.1 12.4 0.75 9.8 5.2 2.2 1 1 1 2 2 2 0 Short coiled-coil protein Hemagglutinin PF00509.18 BAD84232.1 - 0.32 9.3 8.5 2.6 6.3 8.3 1.9 1 1 1 2 2 2 0 Haemagglutinin YabA PF06156.13 BAD84232.1 - 0.33 11.6 11.8 7.7 7.2 10.2 2.7 1 1 1 2 2 2 0 Initiation control protein YabA LXG PF04740.12 BAD84232.1 - 0.34 10.6 11.2 1.9 8.2 8.4 2.5 1 1 1 2 2 2 0 LXG domain of WXG superfamily CdvA PF18822.1 BAD84232.1 - 0.38 10.6 17.5 13 5.7 17.5 2.6 1 1 0 1 1 1 0 CdvA-like coiled-coil domain DUF1843 PF08898.10 BAD84232.1 - 0.38 11.3 5.7 0.42 11.1 0.5 3.0 1 1 2 3 3 3 0 Domain of unknown function (DUF1843) V_ATPase_I PF01496.19 BAD84232.1 - 0.4 8.5 11.0 7.1 4.4 11.2 1.9 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF4349 PF14257.6 BAD84232.1 - 0.44 10.0 8.2 2.1 7.8 3.6 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4349) WXG100 PF06013.12 BAD84232.1 - 0.44 10.8 2.7 7.3 6.9 0.8 3.0 1 1 2 3 3 3 0 Proteins of 100 residues with WXG Occludin_ELL PF07303.13 BAD84232.1 - 0.45 11.3 10.1 0.45 11.3 3.4 2.3 1 1 1 2 2 2 0 Occludin homology domain TraF_2 PF13729.6 BAD84232.1 - 0.46 9.8 4.8 0.2 11.0 2.3 1.6 1 1 1 2 2 2 0 F plasmid transfer operon, TraF, protein GrpE PF01025.19 BAD84232.1 - 0.52 10.0 12.4 2.5 7.8 12.5 1.9 1 1 0 1 1 1 0 GrpE ISG65-75 PF11727.8 BAD84232.1 - 0.56 9.4 3.5 0.62 9.3 2.5 1.5 1 1 1 2 2 2 0 Invariant surface glycoprotein DUF16 PF01519.16 BAD84232.1 - 0.63 10.6 11.6 2.8 8.5 10.9 2.1 1 1 1 2 2 2 0 Protein of unknown function DUF16 Nup88 PF10168.9 BAD84232.1 - 0.68 7.7 10.8 0.84 7.4 10.8 1.1 1 0 0 1 1 1 0 Nuclear pore component FlxA PF14282.6 BAD84232.1 - 0.72 9.9 15.2 9.4 6.3 10.3 2.8 1 1 1 2 2 2 0 FlxA-like protein TssO PF17561.2 BAD84232.1 - 0.73 9.9 15.0 24 5.0 15.0 2.6 1 1 0 1 1 1 0 Type VI secretion system, TssO Snapin_Pallidin PF14712.6 BAD84232.1 - 0.77 10.2 11.9 0.43 11.0 3.8 2.2 1 1 1 2 2 2 0 Snapin/Pallidin DUF2321 PF10083.9 BAD84232.1 - 0.95 9.1 4.0 0.74 9.4 0.8 1.9 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2321) SH3BP5 PF05276.14 BAD84232.1 - 0.97 9.2 8.5 1.1 9.0 5.6 2.2 1 1 0 1 1 1 0 SH3 domain-binding protein 5 (SH3BP5) Med9 PF07544.13 BAD84232.1 - 0.97 9.6 14.2 1.4 9.1 0.5 3.0 1 1 1 3 3 3 0 RNA polymerase II transcription mediator complex subunit 9 Allexi_40kDa PF05549.11 BAD84232.1 - 0.98 8.9 5.7 2.1 7.8 4.5 1.8 1 1 1 2 2 2 0 Allexivirus 40kDa protein Bap31_Bap29_C PF18035.1 BAD84232.1 - 0.98 9.5 13.8 0.62 10.1 3.5 3.3 2 1 1 3 3 2 0 Bap31/Bap29 cytoplasmic coiled-coil domain DUF3450 PF11932.8 BAD84232.1 - 1 8.6 10.2 4.4 6.5 6.5 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) VSG_B PF13206.6 BAD84232.1 - 1 8.6 4.4 0.72 9.0 1.4 1.9 1 1 1 2 2 2 0 Trypanosomal VSG domain TMF_TATA_bd PF12325.8 BAD84232.1 - 1.2 9.4 16.7 4.1 7.7 10.7 2.3 1 1 2 3 3 3 0 TATA element modulatory factor 1 TATA binding Jnk-SapK_ap_N PF09744.9 BAD84232.1 - 1.2 9.4 17.1 0.32 11.2 3.2 2.1 1 1 1 2 2 2 0 JNK_SAPK-associated protein-1 TMF_DNA_bd PF12329.8 BAD84232.1 - 1.3 9.1 16.4 2 8.4 7.3 2.8 2 1 1 3 3 3 0 TATA element modulatory factor 1 DNA binding Flagellin_N PF00669.20 BAD84232.1 - 1.5 8.9 4.3 2.5 8.2 1.0 2.3 2 1 0 2 2 2 0 Bacterial flagellin N-terminal helical region HalX PF08663.10 BAD84232.1 - 1.6 9.1 10.4 14 6.0 0.1 3.3 3 0 0 3 3 3 0 HalX domain DUF2408 PF10303.9 BAD84232.1 - 1.7 9.2 9.4 2.9 8.5 9.4 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2408) IFT20 PF14931.6 BAD84232.1 - 1.8 8.7 14.0 2.4 8.4 4.4 2.5 1 1 0 2 2 2 0 Intraflagellar transport complex B, subunit 20 USP8_interact PF08941.10 BAD84232.1 - 1.8 8.3 5.8 9.9 5.9 3.6 2.2 1 1 2 3 3 3 0 USP8 interacting CENP-H PF05837.12 BAD84232.1 - 1.8 9.0 11.4 4.4 7.8 0.3 2.4 1 1 0 2 2 2 0 Centromere protein H (CENP-H) Uso1_p115_C PF04871.13 BAD84232.1 - 1.9 8.9 12.4 2.1e+02 2.3 12.4 2.1 1 1 0 1 1 1 0 Uso1 / p115 like vesicle tethering protein, C terminal region APG6_N PF17675.1 BAD84232.1 - 2 9.0 19.9 0.068 13.7 5.0 2.3 1 1 1 2 2 2 0 Apg6 coiled-coil region Cob_adeno_trans PF01923.18 BAD84232.1 - 2 8.5 5.2 3.8 7.6 1.9 2.2 1 1 1 2 2 2 0 Cobalamin adenosyltransferase PRKG1_interact PF15898.5 BAD84232.1 - 2.1 9.3 14.3 6.9 7.6 10.5 2.7 1 1 1 2 2 2 0 cGMP-dependent protein kinase interacting domain XhlA PF10779.9 BAD84232.1 - 2.4 8.4 13.3 0.45 10.8 5.0 2.8 2 1 1 3 3 3 0 Haemolysin XhlA DUF5082 PF16888.5 BAD84232.1 - 2.8 8.2 14.1 10 6.4 4.6 2.9 1 1 1 3 3 3 0 Domain of unknown function (DUF5082) UPF0242 PF06785.11 BAD84232.1 - 3 7.9 18.0 1.2 9.3 9.0 1.9 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus IL2 PF00715.17 BAD84232.1 - 3 7.8 6.1 20 5.1 0.1 2.3 1 1 1 2 2 2 0 Interleukin 2 COMP PF11598.8 BAD84232.1 - 3.2 8.3 9.4 13 6.4 0.4 3.3 3 0 0 3 3 3 0 Cartilage oligomeric matrix protein Bcr-Abl_Oligo PF09036.10 BAD84232.1 - 3.3 7.8 7.0 12 6.0 1.2 2.7 1 1 1 3 3 2 0 Bcr-Abl oncoprotein oligomerisation domain 5_nucleotid PF05761.14 BAD84232.1 - 3.6 6.4 7.2 12 4.6 7.2 1.8 1 1 0 1 1 1 0 5' nucleotidase family MetOD2 PF18548.1 BAD84232.1 - 3.9 7.7 13.2 3.6 7.7 3.6 2.5 1 1 2 3 3 3 0 Metanogen output domain 2 BST2 PF16716.5 BAD84232.1 - 3.9 8.1 15.3 8.9 7.0 0.9 3.0 1 1 2 3 3 3 0 Bone marrow stromal antigen 2 TSC22 PF01166.18 BAD84232.1 - 4.1 7.8 15.4 0.82 10.0 0.3 3.8 1 1 3 4 4 4 0 TSC-22/dip/bun family Fzo_mitofusin PF04799.13 BAD84232.1 - 4.2 6.9 8.7 13 5.3 3.3 2.7 1 1 2 3 3 3 0 fzo-like conserved region FAM76 PF16046.5 BAD84232.1 - 4.6 6.5 9.1 5.9 6.2 9.1 1.1 1 0 0 1 1 1 0 FAM76 protein DUF848 PF05852.11 BAD84232.1 - 5.8 7.0 11.9 2.2 8.4 7.4 2.2 1 1 1 2 2 2 0 Gammaherpesvirus protein of unknown function (DUF848) LMBR1 PF04791.16 BAD84232.1 - 5.9 5.7 4.8 8.1 5.2 4.8 1.3 1 0 0 1 1 1 0 LMBR1-like membrane protein RPW8 PF05659.11 BAD84232.1 - 7.2 6.3 13.4 16 5.2 5.3 2.7 1 1 1 2 2 2 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 MCU PF04678.13 BAD84232.1 - 9.4 6.3 8.9 90 3.1 8.9 2.0 1 1 0 1 1 1 0 Mitochondrial calcium uniporter Arch_fla_DE PF04659.13 BAD84233.1 - 2.1e-30 104.5 0.8 1.1e-29 102.1 0.0 2.6 2 1 0 2 2 2 1 Archaeal flagella protein HSBP1 PF06825.12 BAD84233.1 - 5.6e-05 22.9 8.9 0.28 11.1 0.0 5.2 3 1 2 5 5 5 2 Heat shock factor binding protein 1 NPV_P10 PF05531.12 BAD84233.1 - 0.00044 20.7 14.7 0.18 12.3 1.8 4.6 2 1 2 4 4 3 2 Nucleopolyhedrovirus P10 protein FliS PF02561.14 BAD84233.1 - 0.0049 17.1 4.9 0.0049 17.1 4.9 2.5 2 1 0 3 3 2 1 Flagellar protein FliS Baculo_PEP_C PF04513.12 BAD84233.1 - 0.0066 16.5 4.9 0.13 12.3 0.5 2.8 1 1 1 2 2 2 2 Baculovirus polyhedron envelope protein, PEP, C terminus AAA_13 PF13166.6 BAD84233.1 - 0.076 11.6 22.4 0.12 11.0 22.4 1.2 1 0 0 1 1 1 0 AAA domain FUSC PF04632.12 BAD84233.1 - 0.081 11.4 5.1 0.16 10.5 5.1 1.4 1 0 0 1 1 1 0 Fusaric acid resistance protein family BLOC1_2 PF10046.9 BAD84233.1 - 0.1 12.9 24.8 0.068 13.5 8.7 4.3 2 1 2 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF948 PF06103.11 BAD84233.1 - 0.12 12.6 11.7 0.086 13.1 1.4 3.8 2 1 2 4 4 4 0 Bacterial protein of unknown function (DUF948) HBM PF16591.5 BAD84233.1 - 0.12 11.7 13.1 2.5 7.5 8.6 2.3 1 1 1 2 2 2 0 Helical bimodular sensor domain PAX PF00292.18 BAD84233.1 - 0.17 11.8 0.6 0.84 9.6 0.0 2.4 3 0 0 3 3 2 0 'Paired box' domain XhlA PF10779.9 BAD84233.1 - 0.17 12.1 31.4 0.04 14.1 6.6 5.1 4 1 1 5 5 5 0 Haemolysin XhlA WXG100 PF06013.12 BAD84233.1 - 0.23 11.7 4.0 20 5.5 1.7 3.2 2 1 0 2 2 2 0 Proteins of 100 residues with WXG PilJ PF13675.6 BAD84233.1 - 0.26 11.3 3.4 1.2 9.2 0.7 2.8 1 1 2 3 3 3 0 Type IV pili methyl-accepting chemotaxis transducer N-term KxDL PF10241.9 BAD84233.1 - 0.28 11.5 14.4 0.59 10.5 0.9 4.0 2 1 2 4 4 3 0 Uncharacterized conserved protein HemX PF04375.14 BAD84233.1 - 0.33 10.2 16.4 0.33 10.2 11.2 2.2 1 1 1 2 2 2 0 HemX, putative uroporphyrinogen-III C-methyltransferase DUF4735 PF15882.5 BAD84233.1 - 0.4 10.1 6.1 1 8.8 1.6 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4735) Exonuc_VII_L PF02601.15 BAD84233.1 - 0.44 10.1 18.3 1.3 8.6 3.0 2.2 1 1 1 2 2 2 0 Exonuclease VII, large subunit Syntaxin_2 PF14523.6 BAD84233.1 - 0.45 10.9 12.6 28 5.2 0.4 3.5 1 1 1 2 2 2 0 Syntaxin-like protein DUF573 PF04504.14 BAD84233.1 - 0.61 10.8 8.5 7.8 7.2 3.0 2.9 1 1 1 2 2 2 0 Protein of unknown function, DUF573 Hemagglutinin PF00509.18 BAD84233.1 - 0.65 8.3 6.2 2.7 6.3 0.5 2.4 1 1 1 2 2 2 0 Haemagglutinin Allexi_40kDa PF05549.11 BAD84233.1 - 0.72 9.3 11.2 4.2 6.8 1.4 2.4 1 1 1 2 2 2 0 Allexivirus 40kDa protein Med10 PF09748.9 BAD84233.1 - 0.77 9.7 9.9 0.91 9.5 2.6 3.6 1 1 0 2 2 2 0 Transcription factor subunit Med10 of Mediator complex DUF1664 PF07889.12 BAD84233.1 - 0.9 9.6 20.5 0.1 12.6 4.0 3.1 2 1 1 3 3 2 0 Protein of unknown function (DUF1664) Spc7 PF08317.11 BAD84233.1 - 0.9 8.4 40.2 9.8 5.0 11.2 2.6 1 1 1 2 2 2 0 Spc7 kinetochore protein MapZ_EC1 PF18041.1 BAD84233.1 - 1.4 9.2 19.5 11 6.3 8.8 4.2 2 1 2 4 4 4 0 MapZ extracellular domain 1 PMC2NT PF08066.12 BAD84233.1 - 1.5 9.5 4.4 12 6.6 4.4 2.5 1 1 0 1 1 1 0 PMC2NT (NUC016) domain Occludin_ELL PF07303.13 BAD84233.1 - 1.6 9.5 18.1 10 6.9 0.2 3.8 2 1 2 4 4 3 0 Occludin homology domain TPR_MLP1_2 PF07926.12 BAD84233.1 - 2.8 8.0 38.3 0.16 12.0 6.3 3.1 2 1 1 3 3 3 0 TPR/MLP1/MLP2-like protein FemAB PF02388.16 BAD84233.1 - 2.9 6.7 18.4 0.25 10.2 1.3 2.3 1 1 1 2 2 2 0 FemAB family TMPIT PF07851.13 BAD84233.1 - 3 7.0 22.5 0.31 10.3 4.7 2.2 1 1 1 2 2 2 0 TMPIT-like protein COG5 PF10392.9 BAD84233.1 - 3 8.0 12.3 7.7 6.7 3.8 3.0 2 1 1 3 3 2 0 Golgi transport complex subunit 5 V_ATPase_I PF01496.19 BAD84233.1 - 3.1 5.6 21.5 13 3.5 21.5 1.9 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family Exonuc_V_gamma PF04257.14 BAD84233.1 - 3.1 5.9 10.3 1.2 7.3 6.3 1.9 1 1 1 2 2 2 0 Exodeoxyribonuclease V, gamma subunit Sec8_exocyst PF04048.14 BAD84233.1 - 3.4 7.6 14.1 2.5 8.0 2.0 2.7 1 1 1 2 2 2 0 Sec8 exocyst complex component specific domain Sec34 PF04136.15 BAD84233.1 - 4.5 7.1 14.1 3.2 7.6 4.9 3.0 1 1 2 3 3 3 0 Sec34-like family Fib_alpha PF08702.10 BAD84233.1 - 5.2 7.2 16.3 1.1 9.5 6.1 3.1 2 1 1 3 3 3 0 Fibrinogen alpha/beta chain family ParE_toxin PF05016.15 BAD84233.1 - 6.5 7.4 7.4 1.4 9.5 1.9 2.8 3 1 1 4 4 2 0 ParE toxin of type II toxin-antitoxin system, parDE Streptin-Immun PF11083.8 BAD84233.1 - 7.7 7.0 17.0 0.66 10.4 0.6 4.7 3 2 1 4 4 4 0 Lantibiotic streptin immunity protein Prominin PF05478.11 BAD84233.1 - 9 4.1 12.8 21 2.9 12.9 1.5 1 1 0 1 1 1 0 Prominin Alpha-E PF04168.12 BAD84233.1 - 9.1 6.0 11.9 9.5 5.9 2.9 2.9 1 1 2 3 3 3 0 A predicted alpha-helical domain with a conserved ER motif. Arch_flagellin PF01917.16 BAD84234.1 - 1.3e-21 77.5 0.1 1.5e-21 77.3 0.1 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin Arch_flagellin PF01917.16 BAD84235.1 - 4.3e-24 85.5 0.8 4.8e-24 85.4 0.8 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin CARDB PF07705.11 BAD84235.1 - 0.018 15.3 0.2 0.026 14.8 0.2 1.3 1 0 0 1 1 1 0 CARDB ATPase PF06745.13 BAD84236.1 - 7.2e-18 64.8 0.0 9e-18 64.5 0.0 1.1 1 0 0 1 1 1 1 KaiC NACHT PF05729.12 BAD84236.1 - 0.00022 21.2 0.2 0.00073 19.5 0.2 1.8 1 1 0 1 1 1 1 NACHT domain ELP6 PF09807.9 BAD84236.1 - 0.0056 16.1 0.0 0.0069 15.8 0.0 1.2 1 0 0 1 1 1 1 Elongation complex protein 6 AAA_16 PF13191.6 BAD84236.1 - 0.013 15.8 0.0 0.019 15.4 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain TsaE PF02367.17 BAD84236.1 - 0.029 14.4 0.0 0.048 13.7 0.0 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_25 PF13481.6 BAD84236.1 - 0.033 13.8 0.0 0.31 10.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain Rad51 PF08423.11 BAD84236.1 - 0.039 13.2 0.1 0.069 12.4 0.1 1.3 1 0 0 1 1 1 0 Rad51 AAA_29 PF13555.6 BAD84236.1 - 0.081 12.7 0.1 0.51 10.1 0.0 2.1 2 0 0 2 2 2 0 P-loop containing region of AAA domain T2SSE PF00437.20 BAD84237.1 - 3.2e-47 160.9 0.0 5e-47 160.3 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.6 BAD84237.1 - 0.00078 19.1 0.1 0.0019 17.9 0.1 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.27 BAD84237.1 - 0.0065 17.0 0.0 0.033 14.7 0.0 2.1 2 0 0 2 2 2 1 ABC transporter AAA_16 PF13191.6 BAD84237.1 - 0.0081 16.6 0.0 0.26 11.7 0.0 2.4 2 1 0 2 2 2 1 AAA ATPase domain CheR_N PF03705.15 BAD84237.1 - 0.028 14.1 0.7 0.6 9.9 0.1 2.8 2 0 0 2 2 2 0 CheR methyltransferase, all-alpha domain AAA_23 PF13476.6 BAD84237.1 - 0.034 14.6 0.8 0.084 13.4 0.1 1.9 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.6 BAD84237.1 - 0.073 12.8 0.0 0.35 10.5 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain Dynamin_N PF00350.23 BAD84237.1 - 0.096 12.7 0.0 0.19 11.8 0.0 1.5 1 0 0 1 1 1 0 Dynamin family DEAD PF00270.29 BAD84237.1 - 0.12 12.1 0.0 0.61 9.8 0.0 2.1 2 0 0 2 2 2 0 DEAD/DEAH box helicase T2SSF PF00482.23 BAD84238.1 - 6.2e-18 64.9 1.6 1.5e-09 37.9 0.3 3.7 4 1 0 4 4 4 2 Type II secretion system (T2SS), protein F Transglut_C PF00927.22 BAD84239.1 - 1.5e-06 28.3 0.7 0.086 13.0 0.0 3.9 4 0 0 4 4 4 2 Transglutaminase family, C-terminal ig like domain CARDB PF07705.11 BAD84239.1 - 1.2e-05 25.4 12.6 0.012 15.9 0.1 4.8 5 1 0 5 5 5 2 CARDB N_BRCA1_IG PF16158.5 BAD84239.1 - 4.9e-05 24.0 0.0 0.27 12.0 0.0 3.0 2 1 1 3 3 3 2 Ig-like domain from next to BRCA1 gene NPCBM_assoc PF10633.9 BAD84239.1 - 0.0014 18.9 9.0 0.02 15.2 0.1 4.8 4 0 0 4 4 4 1 NPCBM-associated, NEW3 domain of alpha-galactosidase TRAP_beta PF05753.14 BAD84239.1 - 0.075 12.4 1.6 0.76 9.1 0.0 3.1 3 1 1 4 4 4 0 Translocon-associated protein beta (TRAPB) DUF11 PF01345.18 BAD84239.1 - 0.23 11.8 0.1 0.23 11.8 0.1 3.9 2 1 1 3 3 3 0 Domain of unknown function DUF11 PCMT PF01135.19 BAD84240.1 - 3.6e-58 196.8 0.0 4.3e-58 196.5 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 BAD84240.1 - 9.6e-09 35.2 0.0 1.3e-08 34.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 BAD84240.1 - 1.7e-07 31.9 0.0 2.6e-07 31.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 BAD84240.1 - 6.3e-06 26.1 0.0 8.6e-06 25.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 BAD84240.1 - 1e-05 24.7 0.0 1.3e-05 24.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_11 PF08241.12 BAD84240.1 - 0.00016 22.3 0.0 0.00024 21.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 BAD84240.1 - 0.0012 18.1 0.0 0.0018 17.6 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MTS PF05175.14 BAD84240.1 - 0.0013 18.4 0.0 0.002 17.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Fibrillarin PF01269.17 BAD84240.1 - 0.0015 17.7 0.0 0.0019 17.3 0.0 1.1 1 0 0 1 1 1 1 Fibrillarin GCD14 PF08704.10 BAD84240.1 - 0.0016 18.1 0.0 0.002 17.8 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit PrmA PF06325.13 BAD84240.1 - 0.0034 16.8 0.0 0.0041 16.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_4 PF02390.17 BAD84240.1 - 0.0042 16.6 0.0 0.006 16.1 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase Methyltr_RsmB-F PF01189.17 BAD84240.1 - 0.014 15.1 0.0 0.019 14.6 0.0 1.1 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F Methyltransf_3 PF01596.17 BAD84240.1 - 0.016 14.4 0.0 0.022 14.0 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase Met_10 PF02475.16 BAD84240.1 - 0.02 14.6 0.0 0.027 14.2 0.0 1.1 1 0 0 1 1 1 0 Met-10+ like-protein Methyltransf_2 PF00891.18 BAD84240.1 - 0.037 13.3 0.0 0.048 12.9 0.0 1.1 1 0 0 1 1 1 0 O-methyltransferase domain Ubie_methyltran PF01209.18 BAD84240.1 - 0.039 13.3 0.0 0.055 12.8 0.0 1.2 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family tRNA_U5-meth_tr PF05958.11 BAD84240.1 - 0.2 10.6 0.0 0.25 10.3 0.0 1.1 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase UPF0020 PF01170.18 BAD84240.1 - 0.21 11.3 0.0 0.5 10.0 0.0 1.5 1 1 1 2 2 2 0 Putative RNA methylase family UPF0020 HAD PF12710.7 BAD84241.1 - 4.7e-22 79.3 0.0 5.6e-22 79.1 0.0 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 BAD84241.1 - 2e-18 67.5 0.0 5.4e-18 66.0 0.0 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 BAD84241.1 - 1.3e-07 31.6 0.0 0.00019 21.3 0.0 2.9 3 0 0 3 3 3 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 BAD84241.1 - 2.4e-07 31.0 0.0 2.3e-06 27.8 0.0 2.5 2 1 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 BAD84241.1 - 0.15 12.2 0.7 0.52 10.5 0.7 2.0 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Arc_PepC PF06819.11 BAD84242.1 - 2e-38 130.9 1.1 3.2e-38 130.3 1.1 1.2 1 0 0 1 1 1 1 Archaeal Peptidase A24 C-terminal Domain Arc_PepC_II PF06847.11 BAD84242.1 - 0.00025 21.5 0.0 0.00025 21.5 0.0 2.9 3 1 1 4 4 4 1 Archaeal Peptidase A24 C-terminus Type II PqiA PF04403.13 BAD84242.1 - 0.00056 19.8 1.9 0.92 9.3 0.1 2.6 2 0 0 2 2 2 2 Paraquat-inducible protein A TSC22 PF01166.18 BAD84242.1 - 0.1 12.9 2.3 0.2 12.0 0.1 2.2 2 0 0 2 2 2 0 TSC-22/dip/bun family DUF5319 PF17252.2 BAD84242.1 - 0.17 12.1 0.0 0.3 11.3 0.0 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5319) Class_IIIsignal PF04021.12 BAD84243.1 - 2.7e-09 36.7 1.8 3.6e-09 36.3 1.8 1.1 1 0 0 1 1 1 1 Class III signal peptide Spem1 PF15670.5 BAD84243.1 - 0.024 14.2 0.0 0.025 14.2 0.0 1.0 1 0 0 1 1 1 0 Spermatid maturation protein 1 DUF2157 PF09925.9 BAD84243.1 - 0.079 12.7 0.1 0.081 12.7 0.1 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2157) ASCH PF04266.14 BAD84244.1 - 1.3e-14 54.6 0.1 1.6e-14 54.4 0.1 1.0 1 0 0 1 1 1 1 ASCH domain HSDR_N PF04313.14 BAD84244.1 - 0.05 13.5 0.1 0.05 13.5 0.1 1.2 1 0 0 1 1 1 0 Type I restriction enzyme R protein N terminus (HSDR_N) DUF3850 PF12961.7 BAD84244.1 - 0.13 12.3 0.1 0.18 11.8 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3850) ASCH PF04266.14 BAD84245.1 - 3.7e-18 66.1 0.0 8.5e-18 64.9 0.0 1.5 2 0 0 2 2 2 1 ASCH domain RHH_1 PF01402.21 BAD84245.1 - 0.0016 18.3 1.7 0.24 11.4 0.8 2.7 2 0 0 2 2 2 2 Ribbon-helix-helix protein, copG family HupF_HypC PF01455.18 BAD84245.1 - 0.048 13.8 0.0 0.083 13.1 0.0 1.4 1 0 0 1 1 1 0 HupF/HypC family DUF4817 PF16087.5 BAD84245.1 - 0.05 13.4 0.1 0.49 10.2 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain (DUF4817) TTRAP PF14203.6 BAD84245.1 - 0.11 12.5 0.0 5.5 7.0 0.0 2.4 2 0 0 2 2 2 0 Putative tranposon-transfer assisting protein AsnC_trans_reg PF01037.21 BAD84246.1 - 0.012 15.5 0.0 0.017 15.1 0.0 1.3 1 0 0 1 1 1 0 Lrp/AsnC ligand binding domain HAD_2 PF13419.6 BAD84247.1 - 1.8e-30 106.3 0.0 2.3e-30 106.0 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 BAD84247.1 - 2.7e-18 67.0 0.4 1.2e-17 64.9 0.4 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 BAD84247.1 - 9.1e-11 41.7 0.0 3.1e-10 40.0 0.0 1.8 2 0 0 2 2 2 1 HAD-hyrolase-like HAD PF12710.7 BAD84247.1 - 2e-06 28.3 0.1 3.1e-06 27.7 0.1 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.12 BAD84247.1 - 0.00017 21.1 0.0 0.0062 16.0 0.0 2.7 2 1 1 3 3 3 1 Putative Phosphatase CDP-OH_P_transf PF01066.21 BAD84248.1 - 1.8e-15 57.5 2.5 1.8e-15 57.5 2.5 1.9 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase MtrC PF04211.13 BAD84248.1 - 0.064 12.3 7.1 1.4 7.9 0.1 2.4 2 1 1 3 3 3 0 Tetrahydromethanopterin S-methyltransferase, subunit C DUF3017 PF11222.8 BAD84248.1 - 2.6 8.4 11.3 1.4 9.2 0.1 3.5 2 1 2 4 4 4 0 Protein of unknown function (DUF3017) Trm56 PF01994.16 BAD84249.1 - 2.6e-52 175.7 0.0 3.6e-52 175.3 0.0 1.2 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 SPOUT_MTase_2 PF14419.6 BAD84249.1 - 0.00088 18.7 0.1 0.002 17.5 0.0 1.6 2 0 0 2 2 2 1 AF2226-like SPOUT RNA Methylase fused to THUMP SpoU_methylase PF00588.19 BAD84249.1 - 0.0065 16.6 0.0 0.0089 16.2 0.0 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family Transglut_core PF01841.19 BAD84250.1 - 2.4e-07 31.2 0.0 4.5e-07 30.3 0.0 1.5 1 0 0 1 1 1 1 Transglutaminase-like superfamily Arrestin_C PF02752.22 BAD84250.1 - 0.019 15.4 0.5 0.24 11.9 0.0 2.6 3 0 0 3 3 3 0 Arrestin (or S-antigen), C-terminal domain DUF11 PF01345.18 BAD84250.1 - 0.044 14.1 0.4 9.1 6.7 0.3 2.5 2 0 0 2 2 2 0 Domain of unknown function DUF11 N_BRCA1_IG PF16158.5 BAD84250.1 - 0.083 13.6 0.0 0.18 12.5 0.0 1.5 1 0 0 1 1 1 0 Ig-like domain from next to BRCA1 gene Cohesin PF00963.18 BAD84250.1 - 0.1 12.8 1.4 0.27 11.5 0.4 2.1 2 0 0 2 2 2 0 Cohesin domain ASH PF15780.5 BAD84250.1 - 0.15 12.2 0.0 33 4.8 0.0 2.5 2 0 0 2 2 2 0 Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin GlcV_C_terminal PF17847.1 BAD84250.1 - 0.29 11.6 1.9 13 6.3 0.1 2.6 2 0 0 2 2 2 0 Glucose ABC transporter C-terminal domain SAM_adeno_trans PF01887.16 BAD84251.1 - 9.5e-78 260.9 0.0 1.1e-77 260.7 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase PDZ_6 PF17820.1 BAD84251.1 - 0.014 15.2 0.1 0.028 14.3 0.1 1.5 1 0 0 1 1 1 0 PDZ domain Polbeta PF18765.1 BAD84252.1 - 1.4e-10 41.1 0.0 2.2e-10 40.4 0.0 1.3 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 BAD84252.1 - 6.5e-10 39.2 0.0 1.2e-09 38.3 0.0 1.4 1 0 0 1 1 1 1 Nucleotidyltransferase domain HTH_5 PF01022.20 BAD84252.1 - 7.5e-05 22.5 0.2 0.00013 21.7 0.2 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 BAD84252.1 - 0.0012 18.7 0.4 0.0025 17.7 0.2 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 BAD84252.1 - 0.0017 17.8 0.1 0.0031 17.0 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 BAD84252.1 - 0.02 14.7 0.0 0.037 13.8 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain FaeA PF04703.12 BAD84252.1 - 0.078 13.4 0.0 0.14 12.5 0.0 1.4 1 0 0 1 1 1 0 FaeA-like protein Adenyl_cycl_N PF12633.7 BAD84252.1 - 0.095 12.6 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 Adenylate cyclase NT domain HEPN PF05168.14 BAD84253.1 - 2.6e-24 85.6 0.0 2.9e-24 85.5 0.0 1.0 1 0 0 1 1 1 1 HEPN domain DUF2192 PF09958.9 BAD84254.1 - 0.019 14.5 0.1 0.02 14.4 0.1 1.0 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2192) PIN PF01850.21 BAD84255.1 - 9.3e-23 81.0 0.1 1.1e-22 80.9 0.1 1.0 1 0 0 1 1 1 1 PIN domain XPC-binding PF09280.11 BAD84255.1 - 0.021 14.5 0.0 0.032 14.0 0.0 1.3 1 0 0 1 1 1 0 XPC-binding domain DUF5615 PF18480.1 BAD84255.1 - 0.031 14.0 0.0 0.049 13.4 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF5615) CTP_transf_like PF01467.26 BAD84256.1 - 1.4e-19 70.7 0.1 3.3e-19 69.5 0.0 1.7 2 1 0 2 2 2 1 Cytidylyltransferase-like HIGH_NTase1 PF05636.11 BAD84256.1 - 0.049 12.8 0.0 1.5 8.0 0.0 2.1 2 0 0 2 2 2 0 HIGH Nucleotidyl Transferase MARVEL PF01284.23 BAD84257.1 - 0.01 15.9 4.9 0.01 15.9 4.9 1.5 1 1 0 1 1 1 1 Membrane-associating domain PDDEXK_1 PF12705.7 BAD84258.1 - 1.2e-07 31.9 0.1 7e-06 26.1 0.0 2.0 1 1 1 2 2 2 2 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.17 BAD84258.1 - 0.00015 21.9 0.2 0.0033 17.6 0.2 2.3 1 1 0 1 1 1 1 Domain of unknown function DUF83 Met_10 PF02475.16 BAD84260.1 - 2.4e-68 229.8 0.1 3e-68 229.5 0.1 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Cons_hypoth95 PF03602.15 BAD84260.1 - 0.0045 16.6 0.0 0.0076 15.9 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 PrmA PF06325.13 BAD84260.1 - 0.017 14.5 0.0 0.024 14.0 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) DNA_methylase PF00145.17 BAD84260.1 - 0.021 14.2 0.0 0.03 13.7 0.0 1.2 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase Methyltransf_15 PF09445.10 BAD84260.1 - 0.13 11.9 0.0 0.18 11.3 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase AFOR_C PF01314.18 BAD84261.1 - 4.2e-127 424.3 0.2 5e-127 424.1 0.2 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 BAD84261.1 - 4.7e-66 222.5 0.1 6.6e-66 222.0 0.1 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Phage_integr_3 PF16795.5 BAD84262.1 - 1.4e-61 207.1 2.1 1.4e-61 207.1 1.2 1.4 2 0 0 2 2 2 1 Archaeal phage integrase DUF365 PF04033.12 BAD84262.1 - 0.0089 16.3 0.3 0.036 14.3 0.1 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF365) Spike_NTD PF16451.5 BAD84262.1 - 0.18 11.1 0.0 0.28 10.5 0.0 1.2 1 0 0 1 1 1 0 Spike glycoprotein N-terminal domain Laminin_G_3 PF13385.6 BAD84263.1 - 7.3e-16 58.7 2.6 2.2e-15 57.1 2.6 1.9 1 0 0 1 1 1 1 Concanavalin A-like lectin/glucanases superfamily Y_Y_Y PF07495.13 BAD84264.1 - 0.0048 16.8 0.3 0.027 14.4 0.0 2.3 2 0 0 2 2 2 1 Y_Y_Y domain DUF1967 PF09269.11 BAD84264.1 - 0.076 13.0 0.1 0.27 11.2 0.1 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF1967) MucBP PF06458.12 BAD84264.1 - 0.11 13.5 1.1 0.29 12.2 1.1 1.9 1 1 0 1 1 1 0 MucBP domain FG-GAP PF01839.23 BAD84264.1 - 0.28 11.4 3.0 1.7 8.8 0.1 2.7 2 0 0 2 2 2 0 FG-GAP repeat Peptidase_S8 PF00082.22 BAD84265.1 - 3.2e-53 181.0 0.5 5.5e-53 180.2 0.5 1.4 1 0 0 1 1 1 1 Subtilase family DUF3139 PF11337.8 BAD84266.1 - 0.11 13.1 2.9 0.12 13.1 2.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3139) DUF4083 PF13314.6 BAD84266.1 - 0.88 9.6 6.6 0.27 11.2 3.0 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4083) DUF3043 PF11241.8 BAD84266.1 - 2.5 8.1 3.7 2.6 8.0 3.7 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3043) vMSA PF00695.19 BAD84266.1 - 3.8 6.5 4.2 3.6 6.6 4.2 1.1 1 0 0 1 1 1 0 Major surface antigen from hepadnavirus Phage_holin_4_1 PF05105.12 BAD84268.1 - 0.1 12.8 0.4 0.1 12.8 0.4 2.3 1 1 1 2 2 2 0 Bacteriophage holin family DUF2070 PF09843.9 BAD84268.1 - 1.6 6.9 11.3 1.8 6.8 11.3 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) TctA PF01970.16 BAD84269.1 - 0.2 10.4 23.0 0.029 13.1 11.1 2.2 1 1 1 2 2 2 0 Tripartite tricarboxylate transporter TctA family LapA_dom PF06305.11 BAD84271.1 - 0.086 12.7 0.0 0.096 12.5 0.0 1.2 1 0 0 1 1 1 0 Lipopolysaccharide assembly protein A domain Pex24p PF06398.11 BAD84272.1 - 3.4 6.6 5.6 3.9 6.3 5.6 1.4 1 0 0 1 1 1 0 Integral peroxisomal membrane peroxin Spc7 PF08317.11 BAD84273.1 - 0.025 13.5 0.3 0.025 13.5 0.3 1.0 1 0 0 1 1 1 0 Spc7 kinetochore protein MobC PF05713.11 BAD84273.1 - 0.026 15.0 0.3 0.031 14.7 0.3 1.1 1 0 0 1 1 1 0 Bacterial mobilisation protein (MobC) SlyX PF04102.12 BAD84273.1 - 0.039 14.6 0.2 0.041 14.5 0.2 1.1 1 0 0 1 1 1 0 SlyX vATP-synt_E PF01991.18 BAD84273.1 - 0.048 13.1 1.4 0.051 13.0 1.4 1.0 1 0 0 1 1 1 0 ATP synthase (E/31 kDa) subunit Prefoldin PF02996.17 BAD84273.1 - 0.057 13.3 0.6 0.069 13.1 0.6 1.0 1 0 0 1 1 1 0 Prefoldin subunit Spc24 PF08286.11 BAD84273.1 - 0.068 13.4 0.2 0.068 13.4 0.2 1.0 1 0 0 1 1 1 0 Spc24 subunit of Ndc80 DUF5595 PF18077.1 BAD84273.1 - 0.22 11.6 1.2 0.24 11.5 1.2 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF5595) MscS_TM PF12794.7 BAD84274.1 - 0.18 10.7 0.0 0.23 10.3 0.0 1.1 1 0 0 1 1 1 0 Mechanosensitive ion channel inner membrane domain 1 HTH_5 PF01022.20 BAD84275.1 - 2.5e-05 24.0 0.3 4.7e-05 23.2 0.3 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 BAD84275.1 - 4.4e-05 23.3 0.1 0.00015 21.6 0.0 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 BAD84275.1 - 0.00062 19.7 0.2 0.0015 18.5 0.2 1.6 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.6 BAD84275.1 - 0.011 15.9 1.3 0.087 13.0 0.1 2.3 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_24 PF13412.6 BAD84275.1 - 0.014 15.0 0.0 0.026 14.1 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_38 PF13936.6 BAD84275.1 - 0.016 14.9 0.7 0.041 13.6 0.0 2.0 3 0 0 3 3 3 0 Helix-turn-helix domain HrcA_DNA-bdg PF03444.15 BAD84275.1 - 0.067 12.8 0.0 0.14 11.9 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding MarR_2 PF12802.7 BAD84275.1 - 0.11 12.4 0.0 0.27 11.1 0.0 1.6 2 0 0 2 2 2 0 MarR family HTH_11 PF08279.12 BAD84275.1 - 0.14 12.2 0.6 0.23 11.4 0.1 1.6 2 0 0 2 2 2 0 HTH domain AAA_22 PF13401.6 BAD84276.1 - 0.0006 20.1 0.0 0.0012 19.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.7 BAD84276.1 - 0.0008 18.4 0.0 0.0018 17.3 0.0 1.6 2 0 0 2 2 2 1 AAA-like domain DUF87 PF01935.17 BAD84276.1 - 0.0012 19.0 0.0 0.11 12.6 0.0 2.3 2 0 0 2 2 2 1 Helicase HerA, central domain FtsK_SpoIIIE PF01580.18 BAD84276.1 - 0.0064 15.9 0.0 0.014 14.8 0.0 1.6 1 0 0 1 1 1 1 FtsK/SpoIIIE family CbiA PF01656.23 BAD84276.1 - 0.0067 16.5 0.0 0.012 15.7 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ABC_tran PF00005.27 BAD84276.1 - 0.026 15.0 0.0 0.057 13.9 0.0 1.5 1 0 0 1 1 1 0 ABC transporter PduV-EutP PF10662.9 BAD84276.1 - 0.029 14.1 0.2 0.072 12.8 0.0 1.7 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_23 PF13476.6 BAD84276.1 - 0.03 14.8 0.3 0.33 11.4 0.1 2.2 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 BAD84276.1 - 0.046 13.6 0.0 0.096 12.6 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase U6-snRNA_bdg PF10596.9 BAD84276.1 - 0.053 13.5 0.1 0.096 12.6 0.1 1.3 1 0 0 1 1 1 0 U6-snRNA interacting domain of PrP8 NACHT PF05729.12 BAD84276.1 - 0.064 13.2 0.1 0.18 11.7 0.1 1.7 2 0 0 2 2 1 0 NACHT domain Viral_helicase1 PF01443.18 BAD84276.1 - 0.064 13.0 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase ATP_bind_1 PF03029.17 BAD84276.1 - 0.065 13.0 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 BAD84276.1 - 0.069 12.4 0.0 0.13 11.5 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_8 PF12780.7 BAD84276.1 - 0.075 12.3 0.2 2.2 7.5 0.0 2.5 3 0 0 3 3 3 0 P-loop containing dynein motor region D4 T2SSE PF00437.20 BAD84276.1 - 0.093 11.8 0.0 0.14 11.2 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein PA28_beta PF02252.18 BAD84276.1 - 0.098 12.3 0.4 0.17 11.6 0.4 1.3 1 0 0 1 1 1 0 Proteasome activator pa28 beta subunit AAA_24 PF13479.6 BAD84276.1 - 0.1 12.3 0.0 0.2 11.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 BAD84276.1 - 0.11 12.9 0.0 0.19 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain Sigma54_activat PF00158.26 BAD84276.1 - 0.12 12.0 0.0 0.21 11.3 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_29 PF13555.6 BAD84276.1 - 0.15 11.8 0.1 0.28 11.0 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain GAS PF13851.6 BAD84277.1 - 0.00066 19.1 16.7 0.00066 19.1 16.7 2.4 3 0 0 3 3 3 1 Growth-arrest specific micro-tubule binding DUF4201 PF13870.6 BAD84277.1 - 0.0014 18.4 14.7 0.0014 18.4 14.7 3.1 2 2 0 2 2 1 1 Domain of unknown function (DUF4201) Macoilin PF09726.9 BAD84277.1 - 0.0051 15.5 7.7 0.0051 15.5 7.7 1.6 2 0 0 2 2 2 1 Macoilin family Tmemb_cc2 PF10267.9 BAD84277.1 - 0.0053 16.0 6.8 0.0053 16.0 6.8 2.0 2 0 0 2 2 2 1 Predicted transmembrane and coiled-coil 2 protein Spc7 PF08317.11 BAD84277.1 - 0.0073 15.2 16.3 0.0073 15.2 16.3 2.2 2 0 0 2 2 2 1 Spc7 kinetochore protein Csm1_N PF18504.1 BAD84277.1 - 0.021 15.2 5.7 0.021 15.2 5.7 4.0 2 1 2 4 4 4 0 Csm1 N-terminal domain DUF2968 PF11180.8 BAD84277.1 - 0.037 13.6 15.2 0.088 12.4 15.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2968) DivIC PF04977.15 BAD84277.1 - 0.21 11.4 30.8 0.073 12.9 4.1 4.4 3 2 2 5 5 5 0 Septum formation initiator Plk4_PB2 PF18409.1 BAD84277.1 - 0.28 11.9 8.8 5.2 7.8 0.8 2.9 1 1 1 2 2 2 0 Polo-like Kinase 4 Polo Box 2 Cep57_MT_bd PF06657.13 BAD84277.1 - 0.29 11.6 13.9 0.066 13.7 9.6 2.2 2 0 0 2 2 2 0 Centrosome microtubule-binding domain of Cep57 DUF4407 PF14362.6 BAD84277.1 - 0.3 10.4 10.1 0.047 13.0 6.3 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4407) Erf4 PF10256.9 BAD84277.1 - 0.41 10.8 6.5 0.058 13.5 1.5 2.2 3 0 0 3 3 1 0 Golgin subfamily A member 7/ERF4 family CREPT PF16566.5 BAD84277.1 - 0.42 10.8 12.9 0.15 12.3 7.2 2.5 2 0 0 2 2 2 0 Cell-cycle alteration and expression-elevated protein in tumour DUF3287 PF11690.8 BAD84277.1 - 0.53 10.0 5.1 18 5.0 0.0 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF3287) FAM76 PF16046.5 BAD84277.1 - 0.72 9.2 17.5 0.13 11.6 11.1 2.5 2 1 0 2 2 2 0 FAM76 protein HemX PF04375.14 BAD84277.1 - 1 8.5 15.2 0.38 10.0 11.6 2.0 2 0 0 2 2 2 0 HemX, putative uroporphyrinogen-III C-methyltransferase ABC_tran PF00005.27 BAD84277.1 - 1.3 9.5 4.6 0.83 10.2 1.5 2.2 2 0 0 2 2 2 0 ABC transporter DUF2203 PF09969.9 BAD84277.1 - 2 9.1 10.8 1.9 9.3 7.6 2.3 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2203) FIN1 PF17300.2 BAD84277.1 - 2.4 7.6 8.3 4.7 6.6 8.3 1.6 1 0 0 1 1 1 0 Filaments in between nuclei protein-1 DUF489 PF04356.12 BAD84277.1 - 2.4 8.1 8.6 3.7 7.5 1.6 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF489) Herpes_UL25 PF01499.16 BAD84277.1 - 2.7 6.4 10.1 3.3 6.1 7.3 2.1 2 0 0 2 2 2 0 Herpesvirus UL25 family 5_nucleotid PF05761.14 BAD84277.1 - 2.8 6.8 14.3 3.8 6.3 10.8 2.2 2 0 0 2 2 2 0 5' nucleotidase family AAA_23 PF13476.6 BAD84277.1 - 3 8.3 28.3 5.1 7.5 18.9 2.5 2 1 0 2 2 2 0 AAA domain Serine_rich PF08824.10 BAD84277.1 - 4 7.4 10.0 1.3 9.0 6.5 1.9 2 1 0 2 2 1 0 Serine rich protein interaction domain TolA_bind_tri PF16331.5 BAD84277.1 - 5.5 7.1 17.6 7.6 6.7 7.7 2.7 2 0 0 2 2 2 0 TolA binding protein trimerisation ADIP PF11559.8 BAD84277.1 - 6.9 6.7 24.0 7.8 6.6 0.2 2.7 2 1 0 2 2 2 0 Afadin- and alpha -actinin-Binding TMF_TATA_bd PF12325.8 BAD84277.1 - 7.7 6.8 27.4 36 4.6 19.3 3.3 2 1 0 2 2 2 0 TATA element modulatory factor 1 TATA binding ACT_5 PF13710.6 BAD84278.1 - 0.021 14.6 0.0 0.033 14.0 0.0 1.2 1 0 0 1 1 1 0 ACT domain S_layer_C PF05124.12 BAD84279.1 - 2.9e-05 24.2 3.3 0.00025 21.1 1.8 2.6 2 1 0 2 2 2 1 S-layer like family, C-terminal region DUF1297 PF06973.12 BAD84280.1 - 0.087 12.4 0.0 0.15 11.5 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1297) Deltameth_res PF16020.5 BAD84281.1 - 0.061 13.2 0.3 0.083 12.8 0.3 1.2 1 0 0 1 1 1 0 Deltamethrin resistance PhoR PF11808.8 BAD84282.1 - 4 7.9 10.6 4.6 7.7 1.1 2.0 1 1 1 2 2 2 0 Phosphate regulon sensor protein PhoR MazE_antitoxin PF04014.18 BAD84283.1 - 2.9e-10 39.8 0.6 1.4e-06 28.1 0.2 2.3 2 0 0 2 2 2 2 Antidote-toxin recognition MazE, bacterial antitoxin PrlF_antitoxin PF15937.5 BAD84283.1 - 0.00037 20.9 0.1 0.86 10.1 0.0 2.2 2 0 0 2 2 2 2 prlF antitoxin for toxin YhaV_toxin MraZ PF02381.18 BAD84283.1 - 0.0028 17.6 0.1 0.29 11.1 0.0 2.2 2 0 0 2 2 2 1 MraZ protein, putative antitoxin-like CDC48_N PF02359.18 BAD84283.1 - 0.041 14.0 0.2 0.39 10.9 0.0 2.1 2 0 0 2 2 2 0 Cell division protein 48 (CDC48), N-terminal domain TOBE PF03459.17 BAD84283.1 - 0.076 13.3 0.0 0.95 9.8 0.0 2.1 2 0 0 2 2 2 0 TOBE domain UFD1 PF03152.14 BAD84283.1 - 0.092 12.2 0.0 1.5 8.3 0.0 2.0 2 0 0 2 2 2 0 Ubiquitin fusion degradation protein UFD1 CENP-T_C PF15511.6 BAD84284.1 - 0.013 15.7 0.0 0.013 15.6 0.0 1.0 1 0 0 1 1 1 0 Centromere kinetochore component CENP-T histone fold MCM PF00493.23 BAD84285.1 - 3.5e-52 176.7 0.0 5.8e-52 176.0 0.0 1.4 1 0 0 1 1 1 1 MCM P-loop domain MCM_OB PF17207.3 BAD84285.1 - 2.3e-22 79.2 0.1 5.4e-22 78.0 0.0 1.7 2 0 0 2 2 1 1 MCM OB domain MCM_lid PF17855.1 BAD84285.1 - 2.4e-11 43.9 0.8 5.7e-11 42.7 0.8 1.7 1 0 0 1 1 1 1 MCM AAA-lid domain MCM_N PF14551.6 BAD84285.1 - 3.5e-11 43.6 0.3 4.1e-10 40.2 0.1 2.7 2 0 0 2 2 2 1 MCM N-terminal domain Mg_chelatase PF01078.21 BAD84285.1 - 1.7e-05 24.3 0.0 0.00033 20.1 0.0 2.3 1 1 1 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 BAD84285.1 - 1.7e-05 24.9 0.0 0.0017 18.4 0.0 2.7 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.26 BAD84285.1 - 0.00079 19.2 0.0 0.03 14.1 0.0 2.5 2 0 0 2 2 2 1 Sigma-54 interaction domain Zn-ribbon_8 PF09723.10 BAD84285.1 - 0.0028 17.7 0.6 0.0062 16.6 0.6 1.6 1 0 0 1 1 1 1 Zinc ribbon domain zinc_ribbon_2 PF13240.6 BAD84285.1 - 0.012 15.3 1.5 0.89 9.4 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 BAD84285.1 - 0.017 14.5 1.3 2 8.0 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.7 BAD84285.1 - 0.027 14.5 0.2 0.048 13.7 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon HypA PF01155.19 BAD84285.1 - 0.044 13.8 0.1 0.11 12.5 0.1 1.6 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA AAA_7 PF12775.7 BAD84285.1 - 0.048 13.2 0.0 0.36 10.3 0.0 2.2 2 0 0 2 2 2 0 P-loop containing dynein motor region AAA_16 PF13191.6 BAD84285.1 - 0.053 13.9 3.3 0.47 10.8 0.0 3.6 4 1 0 4 4 3 0 AAA ATPase domain zf-DNL PF05180.12 BAD84285.1 - 0.059 13.3 0.0 0.13 12.2 0.0 1.5 1 0 0 1 1 1 0 DNL zinc finger Zn_Tnp_IS1595 PF12760.7 BAD84285.1 - 0.18 11.8 0.3 4.9 7.2 0.0 2.4 2 0 0 2 2 2 0 Transposase zinc-ribbon domain PhnA_Zn_Ribbon PF08274.12 BAD84285.1 - 0.22 11.5 0.0 0.22 11.5 0.0 1.8 2 0 0 2 2 2 0 PhnA Zinc-Ribbon UPF0547 PF10571.9 BAD84285.1 - 0.26 11.4 1.9 12 6.1 0.2 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-ACC PF17848.1 BAD84285.1 - 1.4 9.1 2.6 9.2 6.4 0.4 2.5 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain DUF1610 PF07754.11 BAD84285.1 - 1.4 8.9 4.1 1.9 8.5 0.4 2.8 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Neuropep_like PF15161.6 BAD84286.1 - 0.019 14.6 0.1 0.099 12.3 0.0 1.9 2 0 0 2 2 2 0 Neuropeptide-like Annexin PF00191.20 BAD84290.1 - 0.12 12.5 1.3 0.87 9.7 1.3 2.0 1 1 0 1 1 1 0 Annexin VWA_CoxE PF05762.14 BAD84292.1 - 0.056 12.8 0.0 0.16 11.3 0.0 1.7 1 1 1 2 2 2 0 VWA domain containing CoxE-like protein DUF3334 PF11813.8 BAD84292.1 - 0.14 11.9 0.0 0.17 11.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3334) Phage_integrase PF00589.22 BAD84293.1 - 3.2e-05 23.8 2.6 0.00093 19.0 0.1 2.1 1 1 1 2 2 2 2 Phage integrase family Phage_integr_3 PF16795.5 BAD84293.1 - 0.009 15.9 3.8 0.013 15.4 3.8 1.2 1 0 0 1 1 1 1 Archaeal phage integrase TP_methylase PF00590.20 BAD84295.1 - 2.3e-21 76.7 0.1 2.7e-21 76.5 0.1 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases DUF1788 PF08747.11 BAD84295.1 - 0.13 12.3 0.0 0.24 11.4 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1788) Fe_dep_repr_C PF02742.15 BAD84296.1 - 6.9e-21 74.1 0.1 1.6e-20 73.0 0.1 1.7 1 1 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.19 BAD84296.1 - 6.9e-18 64.6 0.6 1.2e-17 63.8 0.6 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR PF01047.22 BAD84296.1 - 2.9e-08 33.5 0.0 6.3e-08 32.4 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 BAD84296.1 - 1.1e-07 31.7 0.0 1.9e-07 30.8 0.0 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 BAD84296.1 - 1.2e-05 25.0 0.2 2e-05 24.4 0.2 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 BAD84296.1 - 3.4e-05 24.1 0.1 0.0002 21.7 0.1 2.0 2 0 0 2 2 2 1 Transcriptional regulator HTH_Crp_2 PF13545.6 BAD84296.1 - 5.9e-05 23.0 0.0 0.00011 22.1 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_27 PF13463.6 BAD84296.1 - 6.6e-05 23.3 0.1 9.7e-05 22.8 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_36 PF13730.6 BAD84296.1 - 0.00044 20.1 0.0 0.00079 19.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 BAD84296.1 - 0.00085 19.1 0.0 0.0021 17.9 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 BAD84296.1 - 0.001 18.6 0.0 0.0024 17.4 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding GntR PF00392.21 BAD84296.1 - 0.0012 18.5 0.0 0.0023 17.5 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family LexA_DNA_bind PF01726.16 BAD84296.1 - 0.0013 18.5 0.1 0.0058 16.4 0.1 2.2 2 1 0 2 2 1 1 LexA DNA binding domain HTH_micro PF17007.5 BAD84296.1 - 0.0017 17.3 0.7 0.0024 16.8 0.7 1.3 1 0 0 1 1 1 1 HTH-like HTH_12 PF08461.10 BAD84296.1 - 0.0018 18.2 0.7 0.0073 16.2 0.7 2.0 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain IF2_N PF04760.15 BAD84296.1 - 0.0041 16.9 0.0 0.011 15.6 0.0 1.7 1 0 0 1 1 1 1 Translation initiation factor IF-2, N-terminal region HTH_45 PF14947.6 BAD84296.1 - 0.0055 16.7 0.2 0.011 15.7 0.2 1.6 1 1 0 1 1 1 1 Winged helix-turn-helix HTH_29 PF13551.6 BAD84296.1 - 0.0062 16.5 0.0 0.0099 15.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix TFIIE_alpha PF02002.17 BAD84296.1 - 0.0062 16.4 1.3 0.0074 16.1 0.4 1.6 2 0 0 2 2 2 1 TFIIE alpha subunit HxlR PF01638.17 BAD84296.1 - 0.0067 16.2 0.1 0.15 11.9 0.0 2.3 2 1 0 2 2 2 1 HxlR-like helix-turn-helix DUF4423 PF14394.6 BAD84296.1 - 0.0073 16.0 0.2 0.012 15.3 0.2 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4423) DUF2250 PF10007.9 BAD84296.1 - 0.0075 16.4 1.1 0.011 15.8 1.1 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) Rio2_N PF09202.11 BAD84296.1 - 0.015 15.5 0.3 0.25 11.6 0.2 2.1 2 0 0 2 2 2 0 Rio2, N-terminal Penicillinase_R PF03965.16 BAD84296.1 - 0.017 15.5 0.5 0.061 13.7 0.1 1.9 2 0 0 2 2 2 0 Penicillinase repressor HTH_20 PF12840.7 BAD84296.1 - 0.018 15.1 0.0 0.045 13.8 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_28 PF13518.6 BAD84296.1 - 0.035 14.2 0.0 0.072 13.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Mrr_N PF14338.6 BAD84296.1 - 0.036 14.2 0.1 0.11 12.7 0.0 1.8 2 0 0 2 2 2 0 Mrr N-terminal domain DUF4364 PF14277.6 BAD84296.1 - 0.041 13.6 0.1 0.12 12.1 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4364) AbiEi_4 PF13338.6 BAD84296.1 - 0.041 14.0 0.0 0.15 12.2 0.0 1.9 2 0 0 2 2 2 0 Transcriptional regulator, AbiEi antitoxin hnRNP_Q_AcD PF18360.1 BAD84296.1 - 0.047 13.6 0.1 7.1 6.7 0.1 2.4 2 0 0 2 2 2 0 Heterogeneous nuclear ribonucleoprotein Q acidic domain B-block_TFIIIC PF04182.12 BAD84296.1 - 0.05 13.8 0.0 0.088 13.0 0.0 1.4 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_40 PF14493.6 BAD84296.1 - 0.066 13.7 0.3 0.37 11.3 0.3 2.0 1 1 0 1 1 1 0 Helix-turn-helix domain HemN_C PF06969.16 BAD84296.1 - 0.073 13.1 0.3 0.3 11.2 0.0 2.0 2 0 0 2 2 2 0 HemN C-terminal domain HTH_23 PF13384.6 BAD84296.1 - 0.081 12.8 0.0 0.27 11.1 0.0 1.9 2 0 0 2 2 1 0 Homeodomain-like domain HTH_IclR PF09339.10 BAD84296.1 - 0.087 12.6 0.0 0.17 11.7 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_11 PF08279.12 BAD84296.1 - 0.11 12.4 0.2 0.26 11.3 0.1 1.7 2 0 0 2 2 1 0 HTH domain Mnd1 PF03962.15 BAD84296.1 - 0.14 12.5 0.8 0.33 11.3 0.1 2.0 2 0 0 2 2 2 0 Mnd1 HTH domain HTH_47 PF16221.5 BAD84296.1 - 0.17 11.5 0.0 0.28 10.8 0.0 1.4 1 0 0 1 1 1 0 winged helix-turn-helix DUF2391 PF09622.10 BAD84297.1 - 8.1e-11 41.8 0.6 1.1e-10 41.3 0.6 1.1 1 0 0 1 1 1 1 Putative integral membrane protein (DUF2391) DUF1211 PF06736.11 BAD84297.1 - 0.062 13.8 1.8 2.6 8.5 1.1 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1211) DUF3829 PF12889.7 BAD84297.1 - 0.12 11.8 0.1 0.17 11.4 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3829) Cation_ATPase_C PF00689.21 BAD84297.1 - 0.44 10.2 5.2 0.55 9.9 5.2 1.4 1 1 0 1 1 1 0 Cation transporting ATPase, C-terminus DUF3226 PF11536.8 BAD84298.1 - 1.5e-102 342.3 0.1 2e-102 341.9 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3226) Hydrolase PF00702.26 BAD84299.1 - 9.3e-12 45.7 0.1 1.7e-11 44.8 0.1 1.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 BAD84299.1 - 1.1e-11 45.1 0.0 1.7e-11 44.5 0.0 1.4 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 BAD84299.1 - 1.2e-06 28.5 0.0 3.4e-06 27.0 0.0 1.7 2 0 0 2 2 2 1 HAD-hyrolase-like HAD PF12710.7 BAD84299.1 - 0.082 13.3 0.0 0.1 13.0 0.0 1.4 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase DUF1610 PF07754.11 BAD84300.1 - 3e-14 52.7 6.0 3e-14 52.7 6.0 2.5 3 0 0 3 3 2 2 Domain of unknown function (DUF1610) zinc_ribbon_2 PF13240.6 BAD84300.1 - 0.00013 21.6 3.5 0.00013 21.6 3.5 3.4 3 1 0 3 3 3 2 zinc-ribbon domain DZR PF12773.7 BAD84300.1 - 0.00068 19.6 11.4 0.0085 16.1 11.4 2.1 1 1 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 BAD84300.1 - 0.00073 18.9 16.1 0.19 11.2 0.2 3.5 4 0 0 4 4 3 3 zinc-ribbon domain zf-B_box PF00643.24 BAD84300.1 - 0.0027 17.8 8.2 0.15 12.3 4.4 2.7 1 1 1 2 2 2 1 B-box zinc finger HypA PF01155.19 BAD84300.1 - 0.0051 16.8 10.6 0.14 12.2 6.6 2.0 1 1 1 2 2 2 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA OrfB_Zn_ribbon PF07282.11 BAD84300.1 - 0.015 15.2 1.9 0.015 15.2 1.9 2.7 1 1 1 2 2 2 0 Putative transposase DNA-binding domain zf-C2HC5 PF06221.13 BAD84300.1 - 0.015 15.2 4.1 0.015 15.2 4.1 2.2 1 1 1 2 2 2 0 Putative zinc finger motif, C2HC5-type zf-UDP PF14569.6 BAD84300.1 - 0.024 14.7 5.2 0.028 14.5 5.2 1.0 1 0 0 1 1 1 0 Zinc-binding RING-finger Zn-ribbon_8 PF09723.10 BAD84300.1 - 0.028 14.6 3.2 0.028 14.6 3.2 3.0 1 1 1 2 2 2 0 Zinc ribbon domain zf-CHY PF05495.12 BAD84300.1 - 0.028 14.9 7.9 0.077 13.5 7.9 1.6 1 1 0 1 1 1 0 CHY zinc finger PhnA_Zn_Ribbon PF08274.12 BAD84300.1 - 0.033 14.1 14.8 0.52 10.3 0.4 3.9 3 1 1 4 4 4 0 PhnA Zinc-Ribbon YhfH PF14149.6 BAD84300.1 - 0.037 14.0 14.4 0.76 9.8 0.5 3.3 2 1 0 3 3 3 0 YhfH-like protein HscB_4_cys PF18256.1 BAD84300.1 - 0.039 13.8 1.0 0.039 13.8 1.0 3.1 2 1 1 3 3 3 0 Co-chaperone HscB tetracysteine metal binding motif Rubredoxin_2 PF18073.1 BAD84300.1 - 0.051 13.3 17.0 4.6 7.0 0.2 3.9 3 1 0 3 3 3 0 Rubredoxin metal binding domain PolC_DP2 PF03833.13 BAD84300.1 - 0.068 11.0 3.8 0.083 10.7 3.8 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 zinc_ribbon_10 PF10058.9 BAD84300.1 - 0.079 12.7 15.8 2.2 8.1 3.0 3.8 1 1 2 3 3 3 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-MYND PF01753.18 BAD84300.1 - 0.08 13.0 6.8 0.3 11.2 0.3 2.2 1 1 0 2 2 2 0 MYND finger zf-ACC PF17848.1 BAD84300.1 - 0.11 12.5 18.2 3.1 7.9 0.6 4.0 3 1 0 3 3 3 0 Acetyl-coA carboxylase zinc finger domain DUF1272 PF06906.11 BAD84300.1 - 0.12 12.5 11.3 0.44 10.7 2.8 2.7 1 1 1 2 2 2 0 Protein of unknown function (DUF1272) zf_UBZ PF18439.1 BAD84300.1 - 0.14 11.8 16.3 0.91 9.2 0.8 3.7 2 1 2 4 4 4 0 Ubiquitin-Binding Zinc Finger zinc-ribbons_6 PF07191.12 BAD84300.1 - 0.15 12.1 9.9 2 8.5 9.9 2.1 1 1 0 1 1 1 0 zinc-ribbons zf-NADH-PPase PF09297.11 BAD84300.1 - 0.15 11.7 12.8 0.2 11.4 3.5 3.3 3 1 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain C1_2 PF03107.16 BAD84300.1 - 0.18 12.2 8.7 3.6 8.0 0.4 2.2 1 1 1 2 2 2 0 C1 domain Sgf11 PF08209.11 BAD84300.1 - 0.28 10.8 13.3 0.34 10.5 0.4 3.7 3 1 1 4 4 4 0 Sgf11 (transcriptional regulation protein) zf-Mss51 PF13824.6 BAD84300.1 - 0.29 11.3 12.5 1.9 8.7 1.9 2.5 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Nop10p PF04135.12 BAD84300.1 - 0.31 11.1 8.5 1.1 9.3 1.1 2.6 1 1 1 2 2 2 0 Nucleolar RNA-binding protein, Nop10p family TF_Zn_Ribbon PF08271.12 BAD84300.1 - 0.33 10.5 18.5 0.32 10.6 5.8 3.5 3 1 1 4 4 4 0 TFIIB zinc-binding zf-tcix PF14952.6 BAD84300.1 - 0.44 10.2 14.3 1.5 8.5 1.1 3.1 3 0 0 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding zf-AN1 PF01428.16 BAD84300.1 - 0.5 10.6 11.2 3.5 7.9 2.5 2.6 1 1 1 3 3 3 0 AN1-like Zinc finger zf-dskA_traR PF01258.17 BAD84300.1 - 0.51 10.3 11.1 3 7.9 0.1 3.6 4 0 0 4 4 4 0 Prokaryotic dksA/traR C4-type zinc finger Zn_Tnp_IS1595 PF12760.7 BAD84300.1 - 0.54 10.3 20.9 22 5.1 0.4 3.9 2 1 0 2 2 2 0 Transposase zinc-ribbon domain zf-C2H2 PF00096.26 BAD84300.1 - 0.59 10.7 11.3 6.3 7.5 0.5 3.6 4 0 0 4 4 3 0 Zinc finger, C2H2 type NOB1_Zn_bind PF08772.11 BAD84300.1 - 0.72 10.1 10.8 0.16 12.1 4.2 2.2 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like DUF2039 PF10217.9 BAD84300.1 - 0.72 10.2 7.9 3.1 8.2 7.9 1.8 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2039) Prok-RING_1 PF14446.6 BAD84300.1 - 0.78 9.7 10.5 0.93 9.5 5.4 2.5 2 1 0 2 2 2 0 Prokaryotic RING finger family 1 DUF2321 PF10083.9 BAD84300.1 - 0.98 9.0 7.6 0.24 11.0 3.6 2.0 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2321) Zn_ribbon_SprT PF17283.2 BAD84300.1 - 1 9.3 18.2 10 6.1 0.8 3.9 2 1 0 2 2 2 0 SprT-like zinc ribbon domain IBR PF01485.21 BAD84300.1 - 1.2 9.4 10.8 17 5.7 10.8 2.1 1 1 0 1 1 1 0 IBR domain, a half RING-finger domain MCM_OB PF17207.3 BAD84300.1 - 1.2 8.9 6.2 2.4 8.0 6.3 1.5 1 1 0 1 1 1 0 MCM OB domain FUR PF01475.19 BAD84300.1 - 1.5 9.0 3.1 2 8.6 2.4 1.8 1 1 0 1 1 1 0 Ferric uptake regulator family DUF35_N PF12172.8 BAD84300.1 - 1.6 8.7 16.7 6.1 6.8 3.9 3.8 1 1 1 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) TFIIS_C PF01096.18 BAD84300.1 - 1.6 8.6 13.5 9 6.2 0.1 3.8 3 1 1 4 4 4 0 Transcription factor S-II (TFIIS) Zn_Tnp_IS91 PF14319.6 BAD84300.1 - 1.7 8.7 10.0 0.47 10.5 1.6 2.3 1 1 1 2 2 2 0 Transposase zinc-binding domain DUF2072 PF09845.9 BAD84300.1 - 2 8.7 10.6 0.2 11.9 1.4 2.2 1 1 1 2 2 2 0 Zn-ribbon containing protein NRDD PF13597.6 BAD84300.1 - 2.4 6.9 10.8 0.65 8.7 1.6 2.0 1 1 1 2 2 2 0 Anaerobic ribonucleoside-triphosphate reductase zf-C4_Topoisom PF01396.19 BAD84300.1 - 2.6 7.9 14.5 7 6.5 0.9 3.7 2 1 2 4 4 4 0 Topoisomerase DNA binding C4 zinc finger XPA_N PF01286.18 BAD84300.1 - 2.8 8.1 0.0 2.8 8.1 0.0 3.6 4 0 0 4 4 4 0 XPA protein N-terminal DUF2752 PF10825.8 BAD84300.1 - 2.9 8.0 0.1 2.9 8.0 0.1 2.7 3 0 0 3 3 2 0 Protein of unknown function (DUF2752) zf-HIT PF04438.16 BAD84300.1 - 3 7.8 16.7 2.6 8.0 5.7 3.2 1 1 1 2 2 1 0 HIT zinc finger ADK_lid PF05191.14 BAD84300.1 - 3.1 7.9 11.9 35 4.5 0.1 3.4 2 1 0 2 2 2 0 Adenylate kinase, active site lid zf_C2H2_10 PF18414.1 BAD84300.1 - 3.4 7.3 11.4 3.6 7.2 0.1 2.7 3 0 0 3 3 2 0 C2H2 type zinc-finger Ribosomal_L37ae PF01780.19 BAD84300.1 - 4.7 7.4 11.7 2.7 8.1 0.7 3.1 1 1 2 3 3 3 0 Ribosomal L37ae protein family Anti-TRAP PF15777.5 BAD84300.1 - 4.7 7.2 12.6 0.8 9.7 4.1 2.3 1 1 1 2 2 2 0 Tryptophan RNA-binding attenuator protein inhibitory protein LIM PF00412.22 BAD84300.1 - 5.5 7.3 11.3 1.2 9.4 1.6 3.0 1 1 1 2 2 2 0 LIM domain Nudix_N_2 PF14803.6 BAD84300.1 - 5.5 7.0 17.2 6 6.9 5.5 3.7 2 1 2 4 4 4 0 Nudix N-terminal zf-H2C2_2 PF13465.6 BAD84300.1 - 7.5 7.2 17.4 1.8e+02 2.8 0.1 4.0 2 1 0 2 2 1 0 Zinc-finger double domain zf-TFIIB PF13453.6 BAD84300.1 - 8 5.9 16.1 12 5.3 0.4 3.7 2 1 1 3 3 3 0 Transcription factor zinc-finger EF1_GNE PF00736.19 BAD84301.1 - 1.5e-18 66.8 0.1 1.6e-18 66.6 0.1 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain AA_permease_C PF13906.6 BAD84303.1 - 0.051 13.6 0.4 0.061 13.4 0.4 1.1 1 0 0 1 1 1 0 C-terminus of AA_permease SSF PF00474.17 BAD84304.1 - 5.9e-84 282.3 24.8 7.6e-84 281.9 24.8 1.1 1 0 0 1 1 1 1 Sodium:solute symporter family Ceramidase PF05875.12 BAD84304.1 - 0.16 11.3 5.5 0.072 12.5 1.9 2.1 2 0 0 2 2 2 0 Ceramidase Pyr_redox_2 PF07992.14 BAD84305.1 - 5.1e-21 75.2 0.4 9.3e-11 41.5 0.1 2.2 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Fer2_4 PF13510.6 BAD84305.1 - 1.6e-13 50.5 0.0 3.4e-13 49.5 0.0 1.6 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain SO_alpha_A3 PF17806.1 BAD84305.1 - 6e-08 32.9 0.0 1.2e-07 31.9 0.0 1.4 1 0 0 1 1 1 1 Sarcosine oxidase A3 domain Thi4 PF01946.17 BAD84305.1 - 5.5e-06 25.8 0.1 1.5e-05 24.4 0.2 1.7 2 0 0 2 2 2 1 Thi4 family NAD_binding_9 PF13454.6 BAD84305.1 - 0.00046 20.2 0.7 2.1 8.3 0.6 3.3 3 0 0 3 3 3 1 FAD-NAD(P)-binding Pyr_redox_3 PF13738.6 BAD84305.1 - 0.0022 17.3 2.3 2.2 7.5 0.0 3.1 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 BAD84305.1 - 0.0087 14.8 0.4 0.035 12.8 0.1 2.0 2 1 1 3 3 3 1 HI0933-like protein Lycopene_cycl PF05834.12 BAD84305.1 - 0.073 12.1 0.2 0.22 10.5 0.4 1.6 2 0 0 2 2 2 0 Lycopene cyclase protein FAD_oxidored PF12831.7 BAD84305.1 - 0.21 10.9 0.1 0.3 10.4 0.1 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase DAO PF01266.24 BAD84306.1 - 2.2e-73 247.8 0.0 2.6e-73 247.7 0.0 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 BAD84306.1 - 1.9e-06 28.0 0.1 4.3e-06 26.9 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 BAD84306.1 - 6e-06 25.6 0.1 2e-05 23.8 0.1 1.8 1 1 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.27 BAD84306.1 - 1.7e-05 25.3 0.4 3.4e-05 24.3 0.4 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 BAD84306.1 - 2.8e-05 23.5 0.2 9.3e-05 21.8 0.0 1.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 BAD84306.1 - 0.00065 19.0 0.1 0.013 14.8 0.0 2.2 2 0 0 2 2 2 1 Thi4 family FAD_binding_3 PF01494.19 BAD84306.1 - 0.00091 18.6 0.3 0.0016 17.7 0.3 1.4 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_3 PF13738.6 BAD84306.1 - 0.0011 18.3 1.3 0.013 14.8 0.5 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.16 BAD84306.1 - 0.0017 18.1 0.1 0.0027 17.3 0.1 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_7 PF13241.6 BAD84306.1 - 0.0042 17.5 0.0 0.0082 16.6 0.0 1.5 1 0 0 1 1 1 1 Putative NAD(P)-binding TrkA_N PF02254.18 BAD84306.1 - 0.0048 17.2 1.0 0.0091 16.2 1.0 1.4 1 0 0 1 1 1 1 TrkA-N domain 3HCDH_N PF02737.18 BAD84306.1 - 0.0074 16.2 0.1 0.013 15.4 0.1 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HI0933_like PF03486.14 BAD84306.1 - 0.013 14.2 0.3 0.03 13.0 0.1 1.6 2 0 0 2 2 2 0 HI0933-like protein Trp_halogenase PF04820.14 BAD84306.1 - 0.026 13.4 2.7 0.085 11.7 2.7 2.0 1 1 0 1 1 1 0 Tryptophan halogenase AlaDh_PNT_C PF01262.21 BAD84306.1 - 0.029 13.7 0.0 0.084 12.2 0.1 1.7 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain UDPG_MGDP_dh_N PF03721.14 BAD84306.1 - 0.03 13.9 0.2 0.053 13.1 0.2 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain F420_oxidored PF03807.17 BAD84306.1 - 0.033 14.7 1.2 0.097 13.3 1.2 1.8 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent GIDA PF01134.22 BAD84306.1 - 0.064 12.3 1.6 0.48 9.4 0.1 2.2 2 0 0 2 2 2 0 Glucose inhibited division protein A NAD_Gly3P_dh_N PF01210.23 BAD84306.1 - 0.071 13.1 0.1 0.15 12.0 0.1 1.7 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus FAD_oxidored PF12831.7 BAD84306.1 - 0.084 12.2 0.9 0.73 9.1 0.8 2.1 2 1 0 2 2 2 0 FAD dependent oxidoreductase DUF1188 PF06690.11 BAD84306.1 - 0.12 11.9 0.0 0.28 10.7 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1188) NAD_binding_9 PF13454.6 BAD84306.1 - 0.13 12.2 0.1 0.22 11.5 0.1 1.4 1 0 0 1 1 1 0 FAD-NAD(P)-binding Sacchrp_dh_NADP PF03435.18 BAD84306.1 - 0.25 11.6 1.1 0.68 10.2 0.8 1.9 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Pyr_redox_2 PF07992.14 BAD84308.1 - 4e-38 131.3 8.1 5.5e-38 130.9 8.1 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer2_4 PF13510.6 BAD84308.1 - 5e-30 103.4 0.0 1.3e-29 102.0 0.0 1.8 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Pyr_redox_3 PF13738.6 BAD84308.1 - 3.8e-17 62.5 2.7 9.6e-15 54.6 2.7 2.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 BAD84308.1 - 1.5e-14 53.9 14.4 5e-09 35.7 2.5 3.5 2 1 1 3 3 3 3 FAD binding domain FAD_oxidored PF12831.7 BAD84308.1 - 1.3e-13 51.2 3.3 1.3e-13 51.2 3.3 3.3 2 2 1 4 4 4 1 FAD dependent oxidoreductase Pyr_redox PF00070.27 BAD84308.1 - 3.1e-13 50.1 8.6 3.8e-05 24.2 0.8 3.8 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 BAD84308.1 - 4.2e-13 48.8 11.8 3.5e-10 39.2 1.3 3.2 3 0 0 3 3 3 3 HI0933-like protein NAD_binding_8 PF13450.6 BAD84308.1 - 7.5e-11 42.1 3.8 2e-06 27.9 0.2 2.8 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain DAO PF01266.24 BAD84308.1 - 4.7e-10 39.6 14.5 1.4e-05 24.8 0.4 3.8 3 1 0 3 3 3 2 FAD dependent oxidoreductase GIDA PF01134.22 BAD84308.1 - 1.9e-09 37.1 20.7 6e-06 25.6 2.0 4.1 3 1 1 4 4 4 4 Glucose inhibited division protein A FAD_binding_3 PF01494.19 BAD84308.1 - 1.3e-08 34.5 11.8 3.2e-05 23.3 0.9 3.2 4 0 0 4 4 4 2 FAD binding domain NAD_binding_7 PF13241.6 BAD84308.1 - 6.2e-08 33.0 2.0 0.014 15.9 0.2 3.2 2 1 1 3 3 3 2 Putative NAD(P)-binding Thi4 PF01946.17 BAD84308.1 - 2.1e-07 30.4 1.8 0.00057 19.2 0.0 2.6 3 0 0 3 3 3 2 Thi4 family AlaDh_PNT_C PF01262.21 BAD84308.1 - 2.3e-05 23.8 0.3 2.3e-05 23.8 0.3 3.2 3 0 0 3 3 3 1 Alanine dehydrogenase/PNT, C-terminal domain Lycopene_cycl PF05834.12 BAD84308.1 - 5.1e-05 22.5 8.0 0.0012 17.9 1.6 2.5 2 1 0 2 2 2 2 Lycopene cyclase protein Amino_oxidase PF01593.24 BAD84308.1 - 0.0012 18.2 0.1 1.9 7.7 0.0 2.7 3 0 0 3 3 3 2 Flavin containing amine oxidoreductase 3HCDH_N PF02737.18 BAD84308.1 - 0.0031 17.4 5.6 0.28 11.1 0.3 2.5 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.16 BAD84308.1 - 0.0037 16.9 9.2 0.0075 15.9 0.8 4.0 5 1 1 6 6 5 1 Ketopantoate reductase PanE/ApbA UDPG_MGDP_dh_N PF03721.14 BAD84308.1 - 0.005 16.4 2.2 1.4 8.5 0.1 2.4 2 0 0 2 2 2 2 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain K_oxygenase PF13434.6 BAD84308.1 - 0.0052 16.0 0.2 0.63 9.1 0.0 2.3 1 1 1 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) F420_oxidored PF03807.17 BAD84308.1 - 0.0073 16.9 1.7 0.13 12.9 0.2 3.1 3 0 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_9 PF13454.6 BAD84308.1 - 0.01 15.9 5.1 0.31 11.0 0.2 3.5 3 0 0 3 3 3 1 FAD-NAD(P)-binding TrkA_N PF02254.18 BAD84308.1 - 0.054 13.8 1.2 5.2 7.4 0.3 2.8 2 0 0 2 2 2 0 TrkA-N domain Fer2 PF00111.27 BAD84308.1 - 0.069 13.1 1.5 0.21 11.5 1.5 1.9 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain ELFV_dehydrog PF00208.21 BAD84308.1 - 0.075 12.7 0.1 0.51 10.0 0.0 2.1 2 0 0 2 2 2 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Trp_halogenase PF04820.14 BAD84308.1 - 0.1 11.4 6.8 0.04 12.8 0.8 2.1 2 0 0 2 2 2 0 Tryptophan halogenase Shikimate_DH PF01488.20 BAD84308.1 - 0.12 12.5 0.9 2.7 8.1 0.2 2.5 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase XdhC_C PF13478.6 BAD84308.1 - 0.12 12.9 1.2 8.2 7.0 0.0 2.8 3 0 0 3 3 3 0 XdhC Rossmann domain ThiF PF00899.21 BAD84308.1 - 0.14 11.5 0.3 0.25 10.7 0.3 1.4 1 0 0 1 1 1 0 ThiF family DHODB_Fe-S_bind PF10418.9 BAD84308.1 - 0.15 11.9 1.3 0.27 11.1 1.3 1.4 1 0 0 1 1 1 0 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B CoA_binding PF02629.19 BAD84308.1 - 0.78 10.5 3.4 4.5 8.0 0.2 2.8 3 0 0 3 3 2 0 CoA binding domain Fer4 PF00037.27 BAD84309.1 - 2.4e-07 30.3 19.5 4e-07 29.6 2.4 2.8 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.6 BAD84309.1 - 1.4e-05 25.1 8.5 3.3e-05 24.0 8.4 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 BAD84309.1 - 1.7e-05 24.7 13.3 6.5e-05 22.8 0.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 BAD84309.1 - 4e-05 24.1 10.6 0.0001 22.8 10.5 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 BAD84309.1 - 4.2e-05 23.6 22.9 0.0017 18.4 13.8 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 BAD84309.1 - 8.8e-05 22.4 17.5 0.00014 21.8 2.6 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_21 PF14697.6 BAD84309.1 - 0.00012 22.2 14.5 0.00031 20.8 12.6 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 BAD84309.1 - 0.00047 20.9 17.2 0.017 16.0 5.2 2.5 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 BAD84309.1 - 0.00055 20.8 11.6 0.03 15.2 1.3 2.3 1 1 2 3 3 3 3 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 BAD84309.1 - 0.00094 19.6 3.1 0.021 15.3 0.0 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 BAD84309.1 - 0.0054 17.2 0.7 0.0054 17.2 0.7 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_13 PF13370.6 BAD84309.1 - 0.0079 16.7 0.3 0.0079 16.7 0.3 2.6 2 1 0 2 2 2 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 BAD84309.1 - 0.027 15.2 1.3 0.027 15.2 1.3 2.7 3 1 0 3 3 2 0 4Fe-4S single cluster domain Phage_XkdX PF09693.10 BAD84309.1 - 0.19 11.7 0.1 0.43 10.7 0.0 1.6 2 0 0 2 2 1 0 Phage uncharacterised protein (Phage_XkdX) Fer4_17 PF13534.6 BAD84309.1 - 4.9 7.8 13.1 1.1 9.8 2.4 2.6 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 BAD84309.1 - 6.2 7.7 10.4 1.9 9.4 2.6 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer2_BFD PF04324.15 BAD84310.1 - 2.6e-15 56.5 1.4 3.3e-15 56.1 1.4 1.1 1 0 0 1 1 1 1 BFD-like [2Fe-2S] binding domain SO_alpha_A3 PF17806.1 BAD84310.1 - 8.7e-13 48.4 0.0 1e-12 48.2 0.0 1.0 1 0 0 1 1 1 1 Sarcosine oxidase A3 domain DAO PF01266.24 BAD84311.1 - 1.4e-73 248.5 0.1 1.6e-73 248.4 0.1 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 BAD84311.1 - 2.5e-07 30.2 1.1 2.1e-06 27.1 1.1 2.0 1 1 0 1 1 1 1 FAD binding domain Pyr_redox_3 PF13738.6 BAD84311.1 - 4.6e-07 29.4 2.6 5.2e-05 22.6 0.8 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 BAD84311.1 - 1.5e-05 25.4 1.2 0.002 18.7 0.2 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 BAD84311.1 - 6e-05 22.4 0.4 0.005 16.1 0.1 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 BAD84311.1 - 0.00013 22.1 1.7 0.00023 21.3 0.3 2.2 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.21 BAD84311.1 - 0.0052 16.1 0.2 0.49 9.7 0.1 2.3 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Thi4 PF01946.17 BAD84311.1 - 0.008 15.4 0.8 0.025 13.8 0.2 1.9 2 0 0 2 2 2 1 Thi4 family FAD_oxidored PF12831.7 BAD84311.1 - 0.039 13.3 1.3 0.49 9.7 1.3 2.1 1 1 0 1 1 1 0 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 BAD84311.1 - 0.12 11.6 0.8 1.3 8.2 0.3 2.1 2 0 0 2 2 2 0 FAD binding domain NAD_binding_9 PF13454.6 BAD84311.1 - 0.28 11.2 1.3 0.84 9.6 0.3 2.0 2 0 0 2 2 2 0 FAD-NAD(P)-binding HI0933_like PF03486.14 BAD84311.1 - 0.28 9.8 0.7 13 4.4 0.5 2.1 2 0 0 2 2 2 0 HI0933-like protein MFS_1 PF07690.16 BAD84312.1 - 1.2e-42 146.1 57.3 1.1e-24 87.0 30.0 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 BAD84312.1 - 2.2e-24 86.1 33.7 6.4e-24 84.5 33.7 1.6 1 1 0 1 1 1 1 MFS_1 like family MFS_3 PF05977.13 BAD84312.1 - 8e-08 31.1 24.2 1e-07 30.8 24.2 1.1 1 0 0 1 1 1 1 Transmembrane secretion effector Sugar_tr PF00083.24 BAD84312.1 - 0.00031 19.7 42.5 0.007 15.3 13.3 4.0 2 2 2 4 4 4 4 Sugar (and other) transporter Pam17 PF08566.10 BAD84312.1 - 1.5 8.7 9.5 22 4.8 0.1 4.0 4 0 0 4 4 4 0 Mitochondrial import protein Pam17 Acetyltransf_1 PF00583.25 BAD84314.1 - 3.4e-22 78.9 1.2 4.2e-22 78.6 1.2 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 BAD84314.1 - 1.4e-16 60.6 0.1 1.8e-16 60.2 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 BAD84314.1 - 2.4e-15 56.7 1.1 3.8e-15 56.1 1.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 BAD84314.1 - 7.1e-06 26.1 0.2 1.2e-05 25.4 0.2 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 BAD84314.1 - 1.4e-05 25.0 0.0 2.2e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_CG PF14542.6 BAD84314.1 - 4.1e-05 23.6 0.1 0.00012 22.1 0.1 1.8 1 1 1 2 2 2 1 GCN5-related N-acetyl-transferase Acetyltransf_4 PF13420.7 BAD84314.1 - 4.2e-05 23.7 0.2 5.6e-05 23.3 0.2 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 BAD84314.1 - 0.0005 20.8 0.2 0.00065 20.4 0.2 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain PanZ PF12568.8 BAD84314.1 - 0.0029 17.3 0.1 0.0043 16.8 0.1 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_6 PF13480.7 BAD84314.1 - 0.017 15.3 0.0 0.034 14.3 0.0 1.5 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_15 PF17013.5 BAD84314.1 - 0.026 14.0 0.2 0.058 12.9 0.2 1.7 1 1 0 1 1 1 0 Putative acetyl-transferase Acetyltransf_18 PF18014.1 BAD84314.1 - 0.033 14.0 0.0 0.1 12.4 0.0 1.8 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain FliG_N PF14842.6 BAD84314.1 - 0.063 13.8 0.0 0.099 13.2 0.0 1.3 1 0 0 1 1 1 0 FliG N-terminal domain Acetyltransf_8 PF13523.6 BAD84314.1 - 0.081 12.6 0.0 0.1 12.3 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain HTH_3 PF01381.22 BAD84315.1 - 1.8e-06 27.9 0.1 3.1e-06 27.1 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 BAD84315.1 - 0.0094 16.0 0.6 0.02 14.9 0.5 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain DZR PF12773.7 BAD84315.1 - 0.016 15.2 0.4 0.027 14.5 0.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon Death PF00531.22 BAD84315.1 - 0.082 13.1 0.0 0.12 12.5 0.0 1.3 1 0 0 1 1 1 0 Death domain PIN PF01850.21 BAD84317.1 - 1.4e-22 80.5 0.1 1.6e-22 80.3 0.1 1.0 1 0 0 1 1 1 1 PIN domain PIN_12 PF16289.5 BAD84317.1 - 0.0034 17.9 0.0 0.0037 17.8 0.0 1.2 1 1 0 1 1 1 1 PIN domain DUF3381 PF11861.8 BAD84317.1 - 0.13 12.0 0.0 0.19 11.6 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3381) DUF356 PF04009.12 BAD84318.1 - 8e-36 122.5 0.0 1.2e-35 122.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF356) SDH_sah PF01972.16 BAD84319.1 - 6.7e-155 514.2 0.2 7.5e-155 514.1 0.2 1.0 1 0 0 1 1 1 1 Serine dehydrogenase proteinase CLP_protease PF00574.23 BAD84319.1 - 4.1e-07 30.0 0.1 8.4e-07 29.0 0.0 1.5 2 0 0 2 2 2 1 Clp protease ECH_1 PF00378.20 BAD84319.1 - 0.00027 20.3 0.0 0.00044 19.6 0.0 1.5 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase Peptidase_S49 PF01343.18 BAD84319.1 - 0.0034 17.4 0.0 0.0065 16.4 0.0 1.4 1 0 0 1 1 1 1 Peptidase family S49 Calmodulin_bind PF07887.11 BAD84319.1 - 0.02 14.2 0.0 0.028 13.7 0.0 1.2 1 0 0 1 1 1 0 Calmodulin binding protein-like DUF1688 PF07958.11 BAD84319.1 - 0.17 10.6 0.0 0.24 10.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1688) DUF505 PF04458.12 BAD84320.1 - 3.4e-163 544.3 23.6 1.6e-82 277.8 5.8 2.0 1 1 1 2 2 2 2 Protein of unknown function (DUF505) AAA_assoc_C PF09821.9 BAD84320.1 - 1.1e-05 26.0 9.0 0.0029 18.1 0.1 4.8 4 1 0 5 5 5 2 C-terminal AAA-associated domain HTH_36 PF13730.6 BAD84320.1 - 0.0091 15.9 0.0 0.13 12.2 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain DUF4423 PF14394.6 BAD84320.1 - 0.11 12.2 1.1 1.1 8.9 0.0 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4423) TBP PF00352.21 BAD84321.1 - 1.2e-57 191.8 0.0 2.1e-28 98.1 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 BAD84321.1 - 3.1e-08 33.6 0.0 0.00014 21.9 0.0 2.4 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) AIRS_C PF02769.22 BAD84321.1 - 0.041 14.0 0.0 0.35 11.0 0.0 2.0 2 0 0 2 2 2 0 AIR synthase related protein, C-terminal domain CcmH PF03918.14 BAD84322.1 - 0.029 13.7 0.1 0.15 11.4 0.0 2.0 2 0 0 2 2 2 0 Cytochrome C biogenesis protein Hist_deacetyl PF00850.19 BAD84323.1 - 3.1e-70 237.1 0.0 5.4e-70 236.3 0.0 1.3 1 1 0 1 1 1 1 Histone deacetylase domain POR PF01558.18 BAD84324.1 - 5.4e-39 134.1 0.1 6.3e-39 133.9 0.1 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.21 BAD84325.1 - 1.3e-28 99.7 1.6 1.6e-28 99.4 0.4 1.8 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 BAD84325.1 - 6.3e-15 55.6 0.1 9.7e-15 54.9 0.1 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4_7 PF12838.7 BAD84325.1 - 7.9e-09 36.0 10.4 1.7e-07 31.7 10.1 2.7 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.27 BAD84325.1 - 3.5e-08 32.9 19.2 3.9e-07 29.6 2.9 3.0 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 BAD84325.1 - 1.9e-06 27.9 10.2 1.9e-06 27.9 10.2 1.8 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 BAD84325.1 - 1.3e-05 25.2 11.9 2.5e-05 24.3 11.2 2.0 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 BAD84325.1 - 1.9e-05 24.7 10.2 0.014 15.5 2.1 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 BAD84325.1 - 0.00017 21.5 20.8 0.00021 21.2 2.5 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 BAD84325.1 - 0.0021 18.1 19.1 0.0069 16.4 1.9 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_13 PF13370.6 BAD84325.1 - 0.019 15.5 8.7 2.9 8.5 1.2 3.7 4 0 0 4 4 3 0 4Fe-4S single cluster domain of Ferredoxin I Transket_pyr PF02779.24 BAD84325.1 - 0.035 13.8 0.5 0.31 10.7 0.2 2.3 2 0 0 2 2 2 0 Transketolase, pyrimidine binding domain DXP_synthase_N PF13292.6 BAD84325.1 - 0.035 13.3 0.7 0.12 11.6 0.4 1.9 2 0 0 2 2 2 0 1-deoxy-D-xylulose-5-phosphate synthase Fer4_16 PF13484.6 BAD84325.1 - 0.62 11.0 13.3 0.37 11.8 2.1 3.3 2 1 3 5 5 5 0 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 BAD84325.1 - 0.7 10.5 10.4 1.1 9.9 1.3 2.8 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 BAD84325.1 - 2 9.2 8.5 5.2 7.9 0.7 3.4 3 0 0 3 3 3 0 4Fe-4S single cluster domain PIN PF01850.21 BAD84326.1 - 8.5e-13 48.9 1.8 1.1e-12 48.5 1.8 1.1 1 0 0 1 1 1 1 PIN domain PIN_5 PF08745.11 BAD84326.1 - 0.00042 19.8 0.1 0.23 10.9 0.0 2.1 2 0 0 2 2 2 2 PINc domain ribonuclease PIN_2 PF10130.9 BAD84326.1 - 0.0072 16.6 0.8 0.014 15.6 0.8 1.4 1 1 0 1 1 1 1 PIN domain DUF5615 PF18480.1 BAD84326.1 - 0.015 15.0 0.1 0.024 14.4 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF5615) eIF-3c_N PF05470.12 BAD84326.1 - 0.019 13.3 0.0 0.023 13.0 0.0 1.1 1 0 0 1 1 1 0 Eukaryotic translation initiation factor 3 subunit 8 N-terminus Mut7-C PF01927.16 BAD84326.1 - 0.059 13.5 0.0 0.08 13.0 0.0 1.3 1 0 0 1 1 1 0 Mut7-C RNAse domain Succ_CoA_lig PF13607.6 BAD84328.1 - 2.9e-55 185.9 1.5 5.6e-55 184.9 0.8 1.9 2 0 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 BAD84328.1 - 2.9e-26 92.3 0.2 2.4e-24 86.1 0.1 2.4 2 0 0 2 2 2 1 CoA binding domain CoA_binding PF02629.19 BAD84328.1 - 1.5e-16 60.8 1.8 4.8e-16 59.2 1.8 1.9 1 0 0 1 1 1 1 CoA binding domain DUF234 PF03008.14 BAD84329.1 - 6.1e-30 103.6 1.0 1.1e-29 102.8 1.0 1.5 1 0 0 1 1 1 1 Archaea bacterial proteins of unknown function ATPase_2 PF01637.18 BAD84329.1 - 4.6e-17 62.7 0.0 9.6e-16 58.4 0.0 2.3 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 BAD84329.1 - 4.7e-08 33.1 0.0 1.3e-07 31.7 0.0 1.7 2 0 0 2 2 2 1 AAA domain TrmB PF01978.19 BAD84329.1 - 5.7e-07 29.3 0.2 1.9e-06 27.6 0.0 2.0 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB AAA_22 PF13401.6 BAD84329.1 - 4e-05 23.9 0.0 8.8e-05 22.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain HTH_IclR PF09339.10 BAD84329.1 - 7.8e-05 22.4 0.0 0.00018 21.2 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_45 PF14947.6 BAD84329.1 - 0.00025 21.0 0.0 0.00061 19.7 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix AAA_16 PF13191.6 BAD84329.1 - 0.00058 20.3 0.5 0.0027 18.1 0.1 2.3 2 1 0 2 2 2 1 AAA ATPase domain UPF0102 PF02021.17 BAD84329.1 - 0.0011 19.1 0.1 0.0026 18.0 0.1 1.6 1 0 0 1 1 1 1 Uncharacterised protein family UPF0102 AAA_24 PF13479.6 BAD84329.1 - 0.0064 16.2 0.0 0.011 15.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain HTH_5 PF01022.20 BAD84329.1 - 0.13 12.2 0.0 0.42 10.5 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family PadR PF03551.14 BAD84329.1 - 0.13 12.2 0.0 0.64 10.0 0.0 2.2 2 0 0 2 2 2 0 Transcriptional regulator PadR-like family NDUF_B5 PF09781.9 BAD84329.1 - 0.16 11.6 0.0 0.26 10.9 0.0 1.3 1 0 0 1 1 1 0 NADH:ubiquinone oxidoreductase, NDUFB5/SGDH subunit Lactamase_B_3 PF13483.6 BAD84330.1 - 6.6e-33 113.9 0.0 8.3e-33 113.6 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 BAD84330.1 - 2.3e-22 79.5 0.1 3e-22 79.1 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 BAD84330.1 - 8.1e-12 45.6 1.8 8.1e-12 45.6 1.8 1.6 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Inhibitor_I78 PF11720.8 BAD84330.1 - 0.19 11.8 0.0 6.8 6.8 0.0 2.8 3 1 0 3 3 3 0 Peptidase inhibitor I78 family CW_binding_2 PF04122.12 BAD84331.1 - 2.2e-13 50.7 0.3 2.5e-08 34.4 0.2 2.4 2 0 0 2 2 2 2 Putative cell wall binding repeat 2 HTH_24 PF13412.6 BAD84331.1 - 9.4e-07 28.3 0.2 2e-06 27.2 0.2 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 BAD84331.1 - 1.4e-06 28.1 0.1 2.9e-06 27.1 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 BAD84331.1 - 2.4e-06 27.4 0.3 9.7e-06 25.5 0.1 2.0 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain MarR_2 PF12802.7 BAD84331.1 - 3.5e-06 26.8 0.1 1.3e-05 25.0 0.0 1.9 2 0 0 2 2 1 1 MarR family TrmB PF01978.19 BAD84331.1 - 2.7e-05 24.0 0.3 6.6e-05 22.7 0.3 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Penicillinase_R PF03965.16 BAD84331.1 - 0.00011 22.5 0.4 0.00022 21.6 0.4 1.5 1 0 0 1 1 1 1 Penicillinase repressor GntR PF00392.21 BAD84331.1 - 0.00032 20.3 0.4 0.00088 18.9 0.2 1.9 2 0 0 2 2 1 1 Bacterial regulatory proteins, gntR family HTH_IclR PF09339.10 BAD84331.1 - 0.00071 19.3 0.0 0.0014 18.4 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_36 PF13730.6 BAD84331.1 - 0.0029 17.5 0.0 0.0081 16.1 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.12 BAD84331.1 - 0.0072 16.0 0.0 0.014 15.1 0.0 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_11 PF08279.12 BAD84331.1 - 0.011 15.6 0.2 0.03 14.2 0.2 1.7 1 0 0 1 1 1 0 HTH domain HTH_27 PF13463.6 BAD84331.1 - 0.021 15.3 0.1 0.038 14.5 0.1 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain Peripla_BP_1 PF00532.21 BAD84331.1 - 0.039 13.4 0.0 0.071 12.5 0.0 1.4 1 0 0 1 1 1 0 Periplasmic binding proteins and sugar binding domain of LacI family Fe_dep_repress PF01325.19 BAD84331.1 - 0.041 14.1 0.5 0.2 11.9 0.1 2.2 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain DUF1323 PF07037.11 BAD84331.1 - 0.057 13.8 0.0 0.25 11.7 0.0 2.0 2 0 0 2 2 2 0 Putative transcription regulator (DUF1323) TFIIE_alpha PF02002.17 BAD84331.1 - 0.059 13.2 0.0 0.13 12.2 0.0 1.5 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_3 PF01381.22 BAD84331.1 - 0.061 13.4 0.1 0.26 11.4 0.1 2.1 2 0 0 2 2 2 0 Helix-turn-helix HTH_26 PF13443.6 BAD84331.1 - 0.094 13.2 0.0 9 6.8 0.0 2.6 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain Sigma70_r4 PF04545.16 BAD84331.1 - 0.14 11.7 1.0 0.29 10.7 0.4 1.9 2 0 0 2 2 2 0 Sigma-70, region 4 Rrf2 PF02082.20 BAD84331.1 - 0.16 12.4 0.1 0.4 11.1 0.1 1.7 1 0 0 1 1 1 0 Transcriptional regulator zf-C2H2 PF00096.26 BAD84332.1 - 6.9e-06 26.2 0.6 9.5e-06 25.8 0.6 1.2 1 0 0 1 1 1 1 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 BAD84332.1 - 5e-05 23.8 0.5 6.9e-05 23.4 0.5 1.2 1 0 0 1 1 1 1 C2H2-type zinc finger HalOD2 PF18547.1 BAD84332.1 - 0.0033 17.3 0.0 0.004 17.0 0.0 1.1 1 0 0 1 1 1 1 Halobacterial output domain 2 DUF629 PF04780.12 BAD84332.1 - 0.025 13.1 0.0 0.025 13.1 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF629) zf-FPG_IleRS PF06827.14 BAD84332.1 - 0.027 14.4 0.4 0.036 13.9 0.4 1.4 1 1 0 1 1 1 0 Zinc finger found in FPG and IleRS zf-C2H2_aberr PF17017.5 BAD84332.1 - 0.035 14.3 0.0 0.035 14.3 0.0 1.0 1 0 0 1 1 1 0 Aberrant zinc-finger zinc_ribbon_4 PF13717.6 BAD84332.1 - 0.043 13.8 0.0 0.066 13.1 0.0 1.4 1 0 0 1 1 1 0 zinc-ribbon domain zf-C2H2_jaz PF12171.8 BAD84332.1 - 0.058 13.7 0.1 0.07 13.4 0.1 1.2 1 0 0 1 1 1 0 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 BAD84332.1 - 0.066 13.6 0.0 0.091 13.2 0.0 1.3 1 0 0 1 1 1 0 Zinc-finger of C2H2 type FOXP-CC PF16159.5 BAD84332.1 - 0.08 13.6 0.0 0.098 13.3 0.0 1.1 1 0 0 1 1 1 0 FOXP coiled-coil domain zf-Di19 PF05605.12 BAD84332.1 - 0.086 13.1 0.1 0.11 12.8 0.1 1.1 1 0 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding zf-Mss51 PF13824.6 BAD84332.1 - 0.092 12.9 0.0 0.092 12.9 0.0 1.2 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Phage_term_smal PF05944.12 BAD84333.1 - 0.037 14.0 0.1 0.063 13.2 0.1 1.3 1 0 0 1 1 1 0 Phage small terminase subunit RDD PF06271.12 BAD84334.1 - 0.0014 18.9 0.3 0.0021 18.3 0.3 1.2 1 0 0 1 1 1 1 RDD family TetR_C_12 PF16914.5 BAD84334.1 - 0.025 14.7 0.0 0.048 13.8 0.0 1.4 1 0 0 1 1 1 0 Bacterial transcriptional repressor C-terminal EXS PF03124.14 BAD84334.1 - 0.11 11.8 0.0 0.12 11.7 0.0 1.1 1 0 0 1 1 1 0 EXS family DUF4131 PF13567.6 BAD84334.1 - 0.15 11.7 0.1 0.24 11.1 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF2207 PF09972.9 BAD84334.1 - 0.16 10.7 0.0 0.19 10.4 0.0 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Glyco_trans_1_2 PF13524.6 BAD84334.1 - 0.17 12.3 0.1 0.4 11.1 0.1 1.6 1 0 0 1 1 1 0 Glycosyl transferases group 1 TctB PF07331.11 BAD84334.1 - 0.58 10.4 6.5 1.1 9.5 6.5 1.3 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family LPG_synthase_TM PF03706.13 BAD84335.1 - 2.1e-09 37.3 26.8 7.3e-09 35.6 26.8 1.8 1 1 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region SM-ATX PF14438.6 BAD84335.1 - 0.019 15.1 0.5 0.052 13.7 0.5 1.7 1 0 0 1 1 1 0 Ataxin 2 SM domain Fumarate_red_C PF02300.17 BAD84335.1 - 0.14 12.2 4.5 3.2 7.9 0.3 3.1 2 1 1 3 3 3 0 Fumarate reductase subunit C Spermine_synth PF01564.17 BAD84336.1 - 1.9e-49 167.7 0.0 2.4e-49 167.3 0.0 1.1 1 0 0 1 1 1 1 Spermine/spermidine synthase domain Spermine_synt_N PF17284.2 BAD84336.1 - 4e-14 52.2 0.0 7.9e-14 51.3 0.0 1.5 1 0 0 1 1 1 1 Spermidine synthase tetramerisation domain Methyltransf_25 PF13649.6 BAD84336.1 - 0.0014 19.3 0.1 0.0059 17.3 0.1 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_30 PF05430.11 BAD84336.1 - 0.0059 16.5 0.0 0.012 15.5 0.0 1.5 1 0 0 1 1 1 1 S-adenosyl-L-methionine-dependent methyltransferase PvlArgDC PF01862.16 BAD84338.1 - 1.6e-38 132.1 0.1 1.8e-38 131.9 0.1 1.0 1 0 0 1 1 1 1 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) DUF3996 PF13161.6 BAD84338.1 - 0.13 11.9 0.0 0.21 11.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3996) GCV_H PF01597.19 BAD84339.1 - 1.4e-47 160.6 0.8 1.6e-47 160.4 0.8 1.0 1 0 0 1 1 1 1 Glycine cleavage H-protein Biotin_lipoyl PF00364.22 BAD84339.1 - 4e-08 33.0 0.7 8.9e-08 31.9 0.7 1.5 1 0 0 1 1 1 1 Biotin-requiring enzyme RnfC_N PF13375.6 BAD84339.1 - 7.4e-05 22.6 0.0 8.8e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 RnfC Barrel sandwich hybrid domain Biotin_lipoyl_2 PF13533.6 BAD84339.1 - 0.0043 16.8 0.2 0.25 11.2 0.0 3.0 2 1 1 3 3 3 1 Biotin-lipoyl like DUF5137 PF17220.3 BAD84339.1 - 0.026 15.4 0.2 0.042 14.7 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF5137) PspC PF04024.12 BAD84340.1 - 1.1e-20 73.2 0.4 1.1e-20 73.2 0.4 2.3 2 1 0 2 2 2 1 PspC domain Potass_KdpF PF09604.10 BAD84340.1 - 0.18 11.9 0.3 0.18 11.9 0.3 3.9 4 0 0 4 4 4 0 F subunit of K+-transporting ATPase (Potass_KdpF) DUF3185 PF11381.8 BAD84340.1 - 2.1 8.4 11.9 5.3 7.1 1.4 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF3185) DUF2162 PF09930.9 BAD84341.1 - 0.0096 15.4 4.1 0.011 15.2 3.1 1.6 1 1 0 1 1 1 1 Predicted transporter (DUF2162) CitG PF01874.16 BAD84342.1 - 1.8e-49 168.9 0.0 2e-49 168.7 0.0 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase DUF1884 PF08967.10 BAD84343.1 - 1.8e-42 143.5 0.5 2e-42 143.4 0.5 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1884) tRNA_anti-codon PF01336.25 BAD84344.1 - 3.8e-11 42.8 0.3 9.6e-11 41.5 0.3 1.7 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain S1 PF00575.23 BAD84344.1 - 2.2e-09 37.5 1.6 2.2e-09 37.5 1.6 2.4 2 0 0 2 2 2 1 S1 RNA binding domain DnaJ_CXXCXGXG PF00684.19 BAD84344.1 - 2e-06 28.1 27.2 4.1e-06 27.1 13.2 2.6 1 1 2 3 3 3 3 DnaJ central domain DHH PF01368.20 BAD84344.1 - 0.00013 22.1 0.1 0.00049 20.3 0.0 1.9 2 0 0 2 2 2 1 DHH family RMI2 PF16100.5 BAD84344.1 - 0.0022 17.8 0.1 0.0047 16.7 0.1 1.5 1 0 0 1 1 1 1 RecQ-mediated genome instability protein 2 TackOD1 PF18551.1 BAD84344.1 - 0.0026 17.4 0.3 0.0026 17.4 0.3 2.1 2 0 0 2 2 2 1 Thaumarchaeal output domain 1 Anti-TRAP PF15777.5 BAD84344.1 - 0.0085 16.0 1.9 0.0085 16.0 1.9 3.8 2 1 1 3 3 3 2 Tryptophan RNA-binding attenuator protein inhibitory protein Rep_fac-A_3 PF08661.11 BAD84344.1 - 0.082 13.3 0.0 0.19 12.1 0.0 1.5 1 0 0 1 1 1 0 Replication factor A protein 3 DUF1885 PF08968.10 BAD84344.1 - 0.12 12.5 0.0 0.53 10.4 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1885) tRNA_anti_2 PF13742.6 BAD84344.1 - 0.16 12.2 0.0 0.38 11.0 0.0 1.6 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain S1_2 PF13509.6 BAD84344.1 - 0.2 11.8 1.5 1.2 9.2 0.1 2.7 3 0 0 3 3 3 0 S1 domain Cytochrom_c3_2 PF14537.6 BAD84344.1 - 4.3 7.9 5.3 1.9 9.0 1.9 2.0 1 1 1 2 2 2 0 Cytochrome c3 zinc-ribbons_6 PF07191.12 BAD84344.1 - 9.3 6.3 10.2 25 4.9 2.0 3.0 2 1 1 3 3 3 0 zinc-ribbons dCache_1 PF02743.18 BAD84345.1 - 1.8e-38 132.8 1.1 1.8e-38 132.8 1.1 3.6 3 1 0 4 4 3 1 Cache domain MCPsignal PF00015.21 BAD84345.1 - 1.1e-36 126.2 42.4 1.2e-34 119.6 14.7 3.7 1 1 4 5 5 5 2 Methyl-accepting chemotaxis protein (MCP) signalling domain Cache_3-Cache_2 PF17201.4 BAD84345.1 - 3.9e-16 59.2 0.2 3.9e-16 59.2 0.2 3.0 3 1 1 4 4 3 1 Cache 3/Cache 2 fusion domain DUF948 PF06103.11 BAD84345.1 - 9.4e-07 29.0 22.5 0.0047 17.2 0.4 6.1 4 2 2 6 6 5 3 Bacterial protein of unknown function (DUF948) HAMP PF00672.25 BAD84345.1 - 4.4e-06 27.0 7.5 2.5e-05 24.6 0.0 4.1 4 1 1 5 5 2 1 HAMP domain Prominin PF05478.11 BAD84345.1 - 1.1e-05 23.6 13.9 0.0001 20.5 1.0 2.7 1 1 2 3 3 3 2 Prominin dCache_2 PF08269.11 BAD84345.1 - 0.00012 21.4 0.0 0.00012 21.4 0.0 3.8 3 1 0 4 4 4 1 Cache domain Arfaptin PF06456.13 BAD84345.1 - 0.00019 21.1 9.1 0.00045 19.9 2.5 2.9 1 1 2 3 3 3 1 Arfaptin-like domain TACC_C PF05010.14 BAD84345.1 - 0.00035 20.4 23.9 0.026 14.3 2.7 3.0 1 1 2 3 3 3 2 Transforming acidic coiled-coil-containing protein (TACC), C-terminal NPV_P10 PF05531.12 BAD84345.1 - 0.0014 19.0 10.8 6.7 7.2 0.1 5.8 4 2 1 5 5 4 0 Nucleopolyhedrovirus P10 protein GAPES1 PF17155.4 BAD84345.1 - 0.0049 16.2 0.7 0.019 14.3 0.1 2.2 2 0 0 2 2 2 1 Gammaproteobacterial periplasmic sensor domain sCache_2 PF17200.4 BAD84345.1 - 0.008 16.0 0.0 0.008 16.0 0.0 3.7 3 0 0 3 3 3 1 Single Cache domain 2 Syntaxin-6_N PF09177.11 BAD84345.1 - 0.01 16.4 24.0 0.21 12.2 5.7 3.8 2 1 1 3 3 3 0 Syntaxin 6, N-terminal Mis12 PF05859.12 BAD84345.1 - 0.014 15.4 6.0 2 8.4 0.1 3.1 2 1 0 2 2 2 0 Mis12 protein LXG PF04740.12 BAD84345.1 - 0.02 14.6 17.9 1.1 9.0 8.9 4.0 1 1 2 3 3 3 0 LXG domain of WXG superfamily Sec34 PF04136.15 BAD84345.1 - 0.026 14.4 16.7 0.089 12.7 4.2 4.4 3 1 2 5 5 5 0 Sec34-like family Cytochrom_B562 PF07361.11 BAD84345.1 - 0.034 14.8 17.7 3.1 8.5 0.0 5.3 2 1 4 6 6 6 0 Cytochrome b562 ApoLp-III PF07464.11 BAD84345.1 - 0.038 14.1 31.3 0.63 10.1 5.7 4.0 1 1 0 3 3 3 0 Apolipophorin-III precursor (apoLp-III) DUF1664 PF07889.12 BAD84345.1 - 0.039 14.0 27.2 0.7 9.9 4.7 4.9 2 2 1 3 3 3 0 Protein of unknown function (DUF1664) DUF812 PF05667.11 BAD84345.1 - 0.041 12.8 25.4 0.12 11.2 13.9 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF812) TSKS PF15358.6 BAD84345.1 - 0.05 12.0 17.2 0.046 12.1 15.4 1.7 1 1 0 1 1 1 0 Testis-specific serine kinase substrate Fib_alpha PF08702.10 BAD84345.1 - 0.068 13.4 19.9 1.1 9.4 3.3 4.4 2 2 1 3 3 3 0 Fibrinogen alpha/beta chain family Collagen_mid PF15984.5 BAD84345.1 - 0.076 12.8 2.5 2.6 7.7 0.2 2.9 1 1 1 3 3 3 0 Bacterial collagen, middle region MAD PF05557.13 BAD84345.1 - 0.13 10.6 26.7 0.035 12.5 15.5 2.3 1 1 1 2 2 2 0 Mitotic checkpoint protein Spc7 PF08317.11 BAD84345.1 - 0.17 10.7 30.0 0.45 9.4 4.2 2.8 1 1 0 2 2 2 0 Spc7 kinetochore protein Sec5 PF15469.6 BAD84345.1 - 0.24 11.2 3.9 0.35 10.7 0.2 2.8 1 1 1 2 2 2 0 Exocyst complex component Sec5 NolB PF17398.2 BAD84345.1 - 0.39 11.1 4.1 2.2 8.6 0.3 2.6 2 0 0 2 2 2 0 Nodulation protein NolB DUF3450 PF11932.8 BAD84345.1 - 0.39 10.0 28.2 1.2 8.4 2.4 3.5 2 1 1 3 3 3 0 Protein of unknown function (DUF3450) BLOC1_2 PF10046.9 BAD84345.1 - 0.42 10.9 20.8 6.1 7.2 4.4 5.1 3 2 2 5 5 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Laminin_I PF06008.14 BAD84345.1 - 0.45 10.2 32.2 1.4 8.6 3.4 3.3 1 1 2 3 3 3 0 Laminin Domain I APG17 PF04108.12 BAD84345.1 - 0.47 9.5 24.2 2.6 7.1 5.6 3.2 1 1 2 3 3 3 0 Autophagy protein Apg17 Vps53_N PF04100.12 BAD84345.1 - 0.51 9.2 23.4 0.14 11.0 4.3 3.2 2 1 1 3 3 3 0 Vps53-like, N-terminal CorA PF01544.18 BAD84345.1 - 0.88 8.8 16.8 0.029 13.7 2.1 3.3 1 1 3 4 4 4 0 CorA-like Mg2+ transporter protein TPR_MLP1_2 PF07926.12 BAD84345.1 - 1.4 9.0 31.2 0.29 11.2 12.8 4.3 3 1 1 4 4 4 0 TPR/MLP1/MLP2-like protein Laminin_II PF06009.12 BAD84345.1 - 1.8 8.6 32.5 0.28 11.2 7.8 4.9 2 1 5 7 7 6 0 Laminin Domain II ISG65-75 PF11727.8 BAD84345.1 - 2.8 7.1 28.5 3.6 6.7 4.9 3.6 1 1 2 3 3 3 0 Invariant surface glycoprotein DUF745 PF05335.13 BAD84345.1 - 2.8 7.6 35.4 2.5 7.8 0.5 4.3 1 1 3 4 4 4 0 Protein of unknown function (DUF745) DUF1843 PF08898.10 BAD84345.1 - 3.2 8.3 9.6 3.4 8.3 2.5 3.4 2 1 0 2 2 2 0 Domain of unknown function (DUF1843) CheZ PF04344.13 BAD84345.1 - 4 7.3 19.7 1.6 8.6 6.5 3.4 1 1 2 3 3 3 0 Chemotaxis phosphatase, CheZ YkyA PF10368.9 BAD84345.1 - 4.1 7.1 29.2 0.064 12.9 12.0 3.3 2 1 1 4 4 3 0 Putative cell-wall binding lipoprotein ING PF12998.7 BAD84345.1 - 4.2 8.0 11.4 6.3 7.5 0.7 3.8 2 2 1 3 3 3 0 Inhibitor of growth proteins N-terminal histone-binding AKNA PF12443.8 BAD84345.1 - 4.9 7.9 8.7 4.6 8.0 0.3 3.4 2 1 1 3 3 3 0 AT-hook-containing transcription factor ArAE_2_N PF10337.9 BAD84345.1 - 5 6.0 9.1 13 4.7 1.0 2.5 1 1 1 2 2 2 0 Putative ER transporter, 6TM, N-terminal Med9 PF07544.13 BAD84345.1 - 5.5 7.1 14.9 2.9 8.0 4.9 4.0 2 1 2 4 4 4 0 RNA polymerase II transcription mediator complex subunit 9 DegS PF05384.11 BAD84345.1 - 5.9 6.3 32.4 0.97 8.9 6.5 5.0 3 1 0 4 4 4 0 Sensor protein DegS Sec8_exocyst PF04048.14 BAD84345.1 - 6 6.7 12.1 0.13 12.2 0.3 3.7 3 2 1 4 4 3 0 Sec8 exocyst complex component specific domain Baculo_PEP_C PF04513.12 BAD84345.1 - 6.1 6.9 20.6 17 5.5 1.8 4.9 1 1 2 4 4 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus Xan_ur_permease PF00860.20 BAD84346.1 - 1.6e-38 132.4 36.2 3.7e-37 127.9 36.2 2.1 1 1 0 1 1 1 1 Permease family Sulfate_transp PF00916.20 BAD84346.1 - 0.00045 19.1 21.0 0.00079 18.3 21.0 1.4 1 1 0 1 1 1 1 Sulfate permease family ABC_tran PF00005.27 BAD84347.1 - 1.1e-36 126.4 0.0 2e-36 125.5 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 BAD84347.1 - 4.2e-10 39.9 0.1 3.8e-05 23.6 0.0 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA PF00004.29 BAD84347.1 - 0.0019 18.7 0.4 0.013 15.9 0.4 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 BAD84347.1 - 0.0025 17.7 0.0 0.0038 17.2 0.0 1.2 1 0 0 1 1 1 1 Rad17 P-loop domain SMC_N PF02463.19 BAD84347.1 - 0.0036 16.8 0.0 0.053 13.0 0.0 2.0 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 BAD84347.1 - 0.0069 16.7 0.1 0.06 13.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 BAD84347.1 - 0.0083 16.5 0.1 0.018 15.4 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_24 PF13479.6 BAD84347.1 - 0.037 13.7 0.1 1.1 8.9 0.0 2.3 2 0 0 2 2 2 0 AAA domain TniB PF05621.11 BAD84347.1 - 0.066 12.6 0.0 2.5 7.4 0.0 2.2 2 0 0 2 2 2 0 Bacterial TniB protein ATPase_2 PF01637.18 BAD84347.1 - 0.083 12.8 0.0 0.12 12.3 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_30 PF13604.6 BAD84347.1 - 0.084 12.6 0.0 0.18 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain Herpes_U59 PF04529.12 BAD84347.1 - 0.099 11.7 0.0 0.15 11.1 0.0 1.1 1 0 0 1 1 1 0 Herpesvirus U59 protein AAA_23 PF13476.6 BAD84347.1 - 0.11 13.0 0.1 0.18 12.3 0.1 1.6 1 1 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.22 BAD84348.1 - 1.9e-27 96.2 42.0 2e-15 57.0 15.5 3.4 3 1 0 3 3 3 2 Binding-protein-dependent transport system inner membrane component DUF4083 PF13314.6 BAD84348.1 - 0.86 9.6 6.0 3.9 7.5 0.1 3.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4083) Peptidase_S58 PF03576.14 BAD84349.1 - 7.9e-111 370.3 0.6 9.3e-111 370.1 0.6 1.0 1 0 0 1 1 1 1 Peptidase family S58 ABC_tran PF00005.27 BAD84350.1 - 1.8e-21 77.1 0.0 2.3e-21 76.8 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 BAD84350.1 - 8.5e-07 29.1 0.6 0.0078 16.1 0.4 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 BAD84350.1 - 1.9e-05 24.2 0.0 0.004 16.6 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 BAD84350.1 - 5.4e-05 23.8 0.0 7.2e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 BAD84350.1 - 0.00049 19.8 0.1 0.00088 19.0 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 BAD84350.1 - 0.018 14.8 0.0 0.023 14.4 0.0 1.3 1 1 0 1 1 1 0 AAA domain AAA_27 PF13514.6 BAD84350.1 - 0.018 14.6 0.0 0.028 14.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 BAD84350.1 - 0.032 14.0 0.0 0.054 13.2 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.6 BAD84350.1 - 0.14 12.4 0.1 0.29 11.4 0.1 1.6 1 1 0 1 1 1 0 AAA domain Reo_sigmaC PF04582.12 BAD84351.1 - 0.17 12.1 0.3 0.38 11.0 0.1 1.6 2 0 0 2 2 2 0 Reovirus sigma C capsid protein C-terminal domain ABC2_membrane_5 PF13346.6 BAD84352.1 - 2.1e-05 24.2 5.6 2.1e-05 24.2 5.6 2.7 3 1 0 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 BAD84352.1 - 0.0057 16.6 12.3 0.0057 16.6 12.3 1.9 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 BAD84352.1 - 0.0087 15.4 14.4 0.02 14.2 14.4 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 BAD84352.1 - 3.1 6.8 18.8 0.062 12.4 10.9 1.9 1 1 0 1 1 1 0 ABC-2 family transporter protein PEGA PF08308.11 BAD84353.1 - 8.2e-29 99.3 11.9 6.2e-19 67.7 0.2 5.0 4 1 1 5 5 5 4 PEGA domain CarboxypepD_reg PF13620.6 BAD84353.1 - 8.1e-05 22.8 6.4 0.003 17.8 0.0 4.6 5 0 0 5 5 5 1 Carboxypeptidase regulatory-like domain DUF4493 PF14900.6 BAD84353.1 - 0.0025 17.7 7.6 0.59 10.0 0.1 4.2 3 2 2 5 5 5 2 Domain of unknown function (DUF4493) CarbopepD_reg_2 PF13715.6 BAD84353.1 - 0.0068 16.4 0.3 0.2 11.7 0.0 3.1 3 0 0 3 3 3 1 CarboxypepD_reg-like domain Wzt_C PF14524.6 BAD84353.1 - 0.16 12.0 0.2 13 5.8 0.0 3.5 4 0 0 4 4 4 0 Wzt C-terminal domain Radical_SAM PF04055.21 BAD84356.1 - 1.7e-19 70.8 0.0 4.2e-19 69.5 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.19 BAD84356.1 - 0.015 15.3 0.0 0.032 14.3 0.0 1.6 1 0 0 1 1 1 0 B12 binding domain AsnC_trans_reg PF01037.21 BAD84357.1 - 1e-09 38.2 0.1 1.2e-09 38.0 0.1 1.1 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain ACT_4 PF13291.6 BAD84357.1 - 0.095 13.3 0.0 4.3 8.0 0.0 2.0 2 0 0 2 2 2 0 ACT domain TrmB PF01978.19 BAD84358.1 - 3.9e-07 29.9 2.9 2e-06 27.6 0.1 2.5 2 1 1 3 3 3 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 BAD84358.1 - 6e-07 29.2 0.1 1.3e-05 24.9 0.0 2.6 3 0 0 3 3 3 1 IclR helix-turn-helix domain MarR PF01047.22 BAD84358.1 - 1.1e-06 28.5 0.0 2.8e-06 27.2 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 BAD84358.1 - 4.2e-06 27.2 0.1 1.4e-05 25.5 0.0 1.9 2 0 0 2 2 1 1 Winged helix DNA-binding domain MarR_2 PF12802.7 BAD84358.1 - 1.1e-05 25.2 0.1 3.8e-05 23.5 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.6 BAD84358.1 - 2.4e-05 23.8 0.5 0.00011 21.6 0.0 2.5 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 BAD84358.1 - 7.2e-05 22.6 0.9 0.00065 19.5 0.0 2.6 3 0 0 3 3 3 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 BAD84358.1 - 0.00036 20.5 0.1 0.0046 17.0 0.0 2.4 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 BAD84358.1 - 0.0012 18.8 0.3 0.13 12.3 0.0 2.4 2 1 0 2 2 2 1 Crp-like helix-turn-helix domain DUF4423 PF14394.6 BAD84358.1 - 0.002 17.9 1.7 0.056 13.2 0.0 2.8 1 1 2 3 3 3 1 Domain of unknown function (DUF4423) Sigma70_r4 PF04545.16 BAD84358.1 - 0.0022 17.5 0.3 0.028 13.9 0.0 2.7 3 1 0 3 3 3 1 Sigma-70, region 4 HTH_36 PF13730.6 BAD84358.1 - 0.0089 16.0 0.1 0.23 11.4 0.0 2.7 3 0 0 3 3 3 1 Helix-turn-helix domain Rrf2 PF02082.20 BAD84358.1 - 0.015 15.6 0.0 0.052 13.9 0.0 1.8 2 1 0 2 2 2 0 Transcriptional regulator HTH_11 PF08279.12 BAD84358.1 - 0.034 14.1 0.3 0.32 11.0 0.0 2.5 2 1 0 2 2 2 0 HTH domain DprA_WH PF17782.1 BAD84358.1 - 0.035 14.2 0.1 0.11 12.7 0.0 1.8 2 0 0 2 2 2 0 DprA winged helix domain Gluconate_2-dh3 PF13618.6 BAD84358.1 - 0.04 14.1 0.0 0.041 14.1 0.0 1.3 1 0 0 1 1 1 0 Gluconate 2-dehydrogenase subunit 3 HTH_AraC PF00165.23 BAD84358.1 - 0.055 13.6 0.0 0.15 12.2 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family DUF2250 PF10007.9 BAD84358.1 - 0.34 11.0 2.9 0.57 10.3 0.1 2.3 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) AP_endonuc_2 PF01261.24 BAD84359.1 - 1.1e-20 73.9 0.0 1.5e-20 73.6 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Amidohydro_1 PF01979.20 BAD84359.1 - 0.0049 16.2 0.2 0.093 12.0 0.0 2.5 1 1 1 2 2 2 1 Amidohydrolase family DUF2345 PF10106.9 BAD84359.1 - 0.018 14.9 0.0 0.03 14.2 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2345) AHJR-like PF18743.1 BAD84359.1 - 0.091 12.3 0.2 27 4.3 0.0 3.3 4 0 0 4 4 4 0 REase_AHJR-like PHM7_cyt PF14703.6 BAD84360.1 - 0.04 14.1 0.4 0.04 14.1 0.4 3.9 1 1 2 3 3 2 0 Cytosolic domain of 10TM putative phosphate transporter DUF948 PF06103.11 BAD84360.1 - 0.1 12.9 8.9 5.1 7.4 0.0 4.4 3 2 0 3 3 3 0 Bacterial protein of unknown function (DUF948) PilJ PF13675.6 BAD84360.1 - 0.3 11.1 6.3 0.4 10.7 0.0 3.5 2 1 1 3 3 3 0 Type IV pili methyl-accepting chemotaxis transducer N-term Spc7 PF08317.11 BAD84360.1 - 0.36 9.7 41.4 0.042 12.7 10.3 3.1 3 0 0 3 3 3 0 Spc7 kinetochore protein ING PF12998.7 BAD84360.1 - 0.55 10.9 28.5 0.038 14.6 4.0 4.3 3 1 0 3 3 3 0 Inhibitor of growth proteins N-terminal histone-binding FliJ PF02050.16 BAD84360.1 - 0.6 10.3 27.6 2.1 8.6 6.5 3.7 3 1 0 3 3 3 0 Flagellar FliJ protein UPF0242 PF06785.11 BAD84360.1 - 0.95 9.5 36.1 0.26 11.4 9.8 3.3 3 0 0 3 3 3 0 Uncharacterised protein family (UPF0242) N-terminus Baculo_PEP_C PF04513.12 BAD84360.1 - 1.1 9.3 9.9 5.4 7.0 1.8 3.6 3 2 0 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus Synaptobrevin PF00957.21 BAD84360.1 - 1.3 8.9 5.4 1.2 9.0 2.1 2.7 2 0 0 2 2 2 0 Synaptobrevin NPV_P10 PF05531.12 BAD84360.1 - 1.6 9.3 14.2 18 5.9 0.7 5.2 2 2 1 3 3 3 0 Nucleopolyhedrovirus P10 protein DUF3450 PF11932.8 BAD84360.1 - 1.7 7.9 27.3 0.43 9.8 6.3 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF3450) Allexi_40kDa PF05549.11 BAD84360.1 - 3.2 7.2 13.7 1.5 8.3 2.0 2.8 3 0 0 3 3 3 0 Allexivirus 40kDa protein DUF373 PF04123.13 BAD84361.1 - 7.2e-100 334.7 11.6 8.7e-100 334.4 11.6 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) DUF996 PF06195.13 BAD84361.1 - 0.83 9.9 18.8 0.28 11.5 15.7 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF996) Saf_2TM PF18303.1 BAD84361.1 - 1.6 8.3 6.7 0.36 10.4 1.9 2.1 2 0 0 2 2 2 0 SAVED-fused 2TM effector domain Thiamine_BP PF01910.17 BAD84362.1 - 3.4e-33 113.4 1.3 3.8e-33 113.3 1.3 1.0 1 0 0 1 1 1 1 Thiamine-binding protein AMMECR1 PF01871.17 BAD84363.1 - 1.9e-53 180.5 0.0 2.2e-53 180.3 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 TYW3 PF02676.14 BAD84364.1 - 1.1e-44 152.3 0.0 1.5e-44 151.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase TYW3 PIN PF01850.21 BAD84365.1 - 1e-06 29.2 0.2 7.6e-05 23.2 0.2 2.2 1 1 0 1 1 1 1 PIN domain DUF5615 PF18480.1 BAD84365.1 - 0.021 14.6 0.0 0.032 14.0 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF5615) IL34 PF15036.6 BAD84366.1 - 0.073 13.1 0.0 0.081 13.0 0.0 1.0 1 0 0 1 1 1 0 Interleukin 34 AAA_12 PF13087.6 BAD84367.1 - 4.2e-58 196.3 0.0 6.1e-58 195.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_11 PF13086.6 BAD84367.1 - 1.6e-54 185.5 0.0 2.6e-54 184.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 BAD84367.1 - 7.1e-13 48.7 0.2 3.7e-08 33.3 0.1 3.1 4 0 0 4 4 4 2 AAA domain Viral_helicase1 PF01443.18 BAD84367.1 - 1.6e-07 31.3 0.0 0.047 13.4 0.0 3.2 3 0 0 3 3 3 3 Viral (Superfamily 1) RNA helicase AAA_19 PF13245.6 BAD84367.1 - 3e-07 30.9 0.0 2.3e-06 28.0 0.0 2.4 2 1 0 2 2 2 1 AAA domain PIF1 PF05970.14 BAD84367.1 - 2e-05 24.0 0.0 0.00052 19.3 0.0 2.2 2 0 0 2 2 2 1 PIF1-like helicase AAA_16 PF13191.6 BAD84367.1 - 0.0071 16.8 0.3 0.027 14.9 0.3 2.2 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 BAD84367.1 - 0.0072 16.6 0.1 0.027 14.7 0.1 2.1 1 1 0 1 1 1 1 AAA domain UvrD-helicase PF00580.21 BAD84367.1 - 0.017 14.6 0.2 0.068 12.7 0.0 1.8 1 1 0 1 1 1 0 UvrD/REP helicase N-terminal domain Helicase_RecD PF05127.14 BAD84367.1 - 0.019 14.8 0.3 2.1 8.1 0.0 2.4 2 0 0 2 2 2 0 Helicase HEM4 PF02602.15 BAD84367.1 - 0.021 14.2 0.0 0.047 13.0 0.0 1.5 1 0 0 1 1 1 0 Uroporphyrinogen-III synthase HemD T2SSE PF00437.20 BAD84367.1 - 0.034 13.2 0.0 0.073 12.1 0.0 1.6 1 0 0 1 1 1 0 Type II/IV secretion system protein Flavi_DEAD PF07652.14 BAD84367.1 - 0.075 13.0 0.2 1.6 8.7 0.0 2.2 2 0 0 2 2 2 0 Flavivirus DEAD domain cobW PF02492.19 BAD84367.1 - 0.1 12.1 0.0 3.6 7.1 0.0 2.4 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain DUF2090 PF09863.9 BAD84367.1 - 0.1 11.6 0.0 0.26 10.3 0.0 1.6 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2090) OB_aCoA_assoc PF01796.17 BAD84368.1 - 2.2e-21 75.6 0.1 2.9e-21 75.2 0.1 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 BAD84368.1 - 1.9e-09 37.2 0.4 2.8e-09 36.7 0.4 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn_Tnp_IS1595 PF12760.7 BAD84368.1 - 0.0023 17.8 0.1 0.0039 17.1 0.1 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain zf-RRN7 PF11781.8 BAD84368.1 - 0.0031 17.2 0.3 0.0064 16.1 0.3 1.6 1 0 0 1 1 1 1 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 SoxD PF04267.12 BAD84368.1 - 0.047 13.8 1.1 0.053 13.6 0.0 1.6 2 0 0 2 2 2 0 Sarcosine oxidase, delta subunit family Thiolase_N PF00108.23 BAD84369.1 - 1.1e-24 87.2 0.1 2.2e-24 86.2 0.1 1.5 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 BAD84369.1 - 1.5e-11 44.0 0.6 5.6e-11 42.2 0.6 2.1 1 1 0 1 1 1 1 Thiolase, C-terminal domain Ketoacyl-synt_C PF02801.22 BAD84369.1 - 0.0029 17.6 4.0 0.035 14.1 0.4 3.3 3 1 0 3 3 3 1 Beta-ketoacyl synthase, C-terminal domain ketoacyl-synt PF00109.26 BAD84369.1 - 0.0041 16.7 6.6 0.013 15.1 2.0 3.0 2 1 1 3 3 3 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.10 BAD84369.1 - 0.071 13.0 0.8 12 5.8 0.2 2.4 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ALF PF03752.13 BAD84369.1 - 0.88 9.6 3.6 17 5.5 0.9 2.7 2 0 0 2 2 2 0 Short repeats of unknown function ACP_syn_III_C PF08541.10 BAD84370.1 - 9.5e-11 41.7 0.1 4.9e-10 39.4 0.0 2.1 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HMG_CoA_synt_C PF08540.10 BAD84370.1 - 0.00013 21.7 0.1 0.03 14.0 0.0 2.1 1 1 1 2 2 2 2 Hydroxymethylglutaryl-coenzyme A synthase C terminal ACP_syn_III PF08545.10 BAD84370.1 - 0.0011 18.7 2.6 0.0051 16.6 0.4 2.3 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Thiolase_N PF00108.23 BAD84370.1 - 0.0015 18.0 0.0 0.0022 17.4 0.0 1.2 1 0 0 1 1 1 1 Thiolase, N-terminal domain HMG_CoA_synt_N PF01154.17 BAD84370.1 - 0.0045 16.9 0.0 0.0085 16.0 0.0 1.5 1 1 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal ketoacyl-synt PF00109.26 BAD84370.1 - 0.1 12.2 2.3 1.6 8.2 0.9 3.0 3 1 1 4 4 4 0 Beta-ketoacyl synthase, N-terminal domain PTCRA PF15028.6 BAD84370.1 - 0.19 11.5 0.1 0.31 10.7 0.1 1.3 1 0 0 1 1 1 0 Pre-T-cell antigen receptor AIM24 PF01987.17 BAD84371.1 - 4.1e-62 209.6 0.1 4.6e-62 209.4 0.1 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 Fibrillarin PF01269.17 BAD84372.1 - 1.8e-100 334.7 0.0 2.1e-100 334.5 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin PCMT PF01135.19 BAD84372.1 - 4.2e-07 29.9 0.0 5.3e-07 29.6 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) GCD14 PF08704.10 BAD84372.1 - 0.00028 20.6 0.0 0.00041 20.1 0.0 1.2 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit FtsJ PF01728.19 BAD84372.1 - 0.047 13.8 0.0 0.071 13.2 0.0 1.4 1 1 0 1 1 1 0 FtsJ-like methyltransferase Nop PF01798.18 BAD84373.1 - 4.3e-73 245.6 0.0 5.6e-73 245.2 0.0 1.1 1 0 0 1 1 1 1 snoRNA binding domain, fibrillarin FliT PF05400.13 BAD84373.1 - 0.16 12.8 1.6 0.77 10.6 0.3 2.5 2 0 0 2 2 2 0 Flagellar protein FliT IF-2B PF01008.17 BAD84374.1 - 4.7e-93 311.5 0.3 5.4e-93 311.3 0.3 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family BtrH_N PF14399.6 BAD84374.1 - 0.007 16.6 0.3 0.7 10.1 0.0 2.3 2 0 0 2 2 2 2 Butirosin biosynthesis protein H, N-terminal Aminotran_1_2 PF00155.21 BAD84375.1 - 1.3e-38 133.1 0.0 1.5e-38 133.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.7 BAD84375.1 - 8.9e-17 61.0 0.0 1.3e-16 60.5 0.0 1.1 1 0 0 1 1 1 1 Alanine-glyoxylate amino-transferase Beta_elim_lyase PF01212.21 BAD84375.1 - 0.0087 15.4 0.0 0.014 14.7 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Peptidase_C26 PF07722.13 BAD84376.1 - 1.2e-51 175.5 0.0 1.7e-51 175.1 0.0 1.2 1 0 0 1 1 1 1 Peptidase C26 GATase PF00117.28 BAD84376.1 - 2.4e-09 37.2 0.0 4.8e-09 36.2 0.0 1.6 1 1 0 1 1 1 1 Glutamine amidotransferase class-I SseB_C PF14581.6 BAD84376.1 - 0.056 13.5 0.1 0.31 11.2 0.1 2.0 2 0 0 2 2 2 0 SseB protein C-terminal domain Radical_SAM PF04055.21 BAD84377.1 - 6.7e-17 62.4 0.0 1.5e-16 61.3 0.0 1.6 1 0 0 1 1 1 1 Radical SAM superfamily DUF1848 PF08902.11 BAD84377.1 - 8.9e-05 22.3 4.5 0.19 11.4 0.0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF1848) OsmC PF02566.19 BAD84378.1 - 4.8e-16 59.1 0.0 6e-16 58.8 0.0 1.2 1 0 0 1 1 1 1 OsmC-like protein GATase PF00117.28 BAD84379.1 - 5e-46 156.9 0.0 5.9e-46 156.6 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 BAD84379.1 - 4.1e-14 52.9 0.1 4.3e-12 46.2 0.0 2.8 1 1 1 2 2 2 1 Peptidase C26 SNO PF01174.19 BAD84379.1 - 0.21 11.4 0.0 4.2 7.2 0.0 2.0 2 0 0 2 2 2 0 SNO glutamine amidotransferase family PIN PF01850.21 BAD84380.1 - 1.2e-09 38.7 0.3 2.3e-09 37.8 0.3 1.5 1 1 0 1 1 1 1 PIN domain PIN_4 PF13638.6 BAD84380.1 - 0.019 15.3 0.0 0.098 12.9 0.0 1.9 2 0 0 2 2 2 0 PIN domain PIN_8 PF18476.1 BAD84380.1 - 0.08 12.8 0.0 0.49 10.2 0.0 1.9 2 0 0 2 2 2 0 PIN like domain DUF104 PF01954.16 BAD84381.1 - 1e-17 64.3 6.6 1.4e-17 63.8 6.6 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF104 GMP_synt_C PF00958.22 BAD84382.1 - 3.2e-35 120.1 0.0 6.1e-35 119.1 0.0 1.5 1 0 0 1 1 1 1 GMP synthase C terminal domain NAD_synthase PF02540.17 BAD84382.1 - 8.9e-14 51.2 0.0 2.1e-06 27.0 0.0 2.3 2 0 0 2 2 2 2 NAD synthase QueC PF06508.13 BAD84382.1 - 5.2e-06 26.1 0.0 0.00081 18.9 0.0 2.2 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC ThiI PF02568.14 BAD84382.1 - 1.1e-05 25.1 0.0 2.5e-05 24.0 0.0 1.5 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) tRNA_Me_trans PF03054.16 BAD84382.1 - 2.5e-05 23.2 0.1 0.01 14.6 0.0 2.2 2 0 0 2 2 2 2 tRNA methyl transferase Asn_synthase PF00733.21 BAD84382.1 - 0.0025 17.5 0.0 0.0047 16.6 0.0 1.4 1 0 0 1 1 1 1 Asparagine synthase ATP_bind_3 PF01171.20 BAD84382.1 - 0.0026 17.5 0.0 0.0049 16.7 0.0 1.4 1 0 0 1 1 1 1 PP-loop family PAPS_reduct PF01507.19 BAD84382.1 - 0.041 13.9 0.0 0.074 13.1 0.0 1.4 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family IMPDH PF00478.25 BAD84383.1 - 2e-148 494.0 8.8 2.4e-148 493.8 8.8 1.1 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain CBS PF00571.28 BAD84383.1 - 4.6e-31 107.0 6.8 1.1e-15 57.7 0.7 3.1 2 1 1 3 3 3 2 CBS domain NMO PF03060.15 BAD84383.1 - 5.1e-08 32.7 9.2 0.00093 18.7 2.6 3.0 2 1 0 3 3 3 2 Nitronate monooxygenase FMN_dh PF01070.18 BAD84383.1 - 1.6e-06 27.4 12.9 2.9e-06 26.6 11.4 2.1 2 1 0 2 2 2 1 FMN-dependent dehydrogenase His_biosynth PF00977.21 BAD84383.1 - 1.6e-05 24.5 3.9 8.1e-05 22.2 3.8 2.1 1 1 0 1 1 1 1 Histidine biosynthesis protein Glu_synthase PF01645.17 BAD84383.1 - 2e-05 23.9 4.2 4e-05 22.9 4.2 1.5 1 0 0 1 1 1 1 Conserved region in glutamate synthase ddrB-ParB PF18763.1 BAD84383.1 - 0.013 15.6 0.1 0.036 14.2 0.1 1.7 1 1 0 1 1 1 0 ddrB-like ParB superfamily domain DHO_dh PF01180.21 BAD84383.1 - 0.056 12.6 1.3 0.13 11.4 1.3 1.6 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase PRC PF05239.16 BAD84383.1 - 0.21 11.7 4.8 6.8 6.8 0.9 2.9 2 1 0 2 2 2 0 PRC-barrel domain DUF3659 PF12396.8 BAD84383.1 - 0.46 10.4 3.5 4.6 7.2 1.0 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3659) ThiG PF05690.14 BAD84383.1 - 0.69 9.2 12.7 0.046 13.0 2.5 3.1 3 1 1 4 4 4 0 Thiazole biosynthesis protein ThiG G3P_antiterm PF04309.12 BAD84383.1 - 1.4 8.3 4.6 1.1 8.6 0.2 2.8 4 0 0 4 4 4 0 Glycerol-3-phosphate responsive antiterminator DUF835 PF05763.12 BAD84384.1 - 7.7e-34 116.3 0.0 1.1e-33 115.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF835) DUF1297 PF06973.12 BAD84385.1 - 1.9e-70 236.2 0.0 2.6e-70 235.8 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.12 BAD84385.1 - 1e-32 112.6 0.0 1.9e-32 111.8 0.0 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF1246) CPSase_L_D2 PF02786.17 BAD84385.1 - 0.027 14.0 0.0 0.061 12.8 0.0 1.6 2 0 0 2 2 2 0 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_3 PF02655.14 BAD84385.1 - 0.033 14.3 0.0 0.14 12.2 0.0 2.0 1 1 0 1 1 1 0 ATP-grasp domain AIRS_C PF02769.22 BAD84386.1 - 1.3e-56 191.0 3.1 8.4e-36 123.4 0.1 2.8 3 0 0 3 3 3 2 AIR synthase related protein, C-terminal domain AIRS PF00586.24 BAD84386.1 - 2.5e-48 162.7 0.3 5.5e-25 87.9 0.0 2.6 2 0 0 2 2 2 2 AIR synthase related protein, N-terminal domain FGAR-AT_linker PF18072.1 BAD84386.1 - 1e-07 32.4 0.6 4.9e-07 30.2 0.2 2.4 2 0 0 2 2 2 1 Formylglycinamide ribonucleotide amidotransferase linker domain MFS_1 PF07690.16 BAD84387.1 - 1.8e-10 40.3 23.9 2e-10 40.2 23.9 1.0 1 0 0 1 1 1 1 Major Facilitator Superfamily MFS_3 PF05977.13 BAD84387.1 - 1.1e-08 34.0 9.8 1.3e-08 33.7 9.8 1.0 1 0 0 1 1 1 1 Transmembrane secretion effector MFS_3 PF05977.13 BAD84388.1 - 1.8e-16 59.7 3.7 2.2e-16 59.4 3.7 1.0 1 0 0 1 1 1 1 Transmembrane secretion effector MFS_1 PF07690.16 BAD84388.1 - 3.5e-15 55.8 7.6 3.8e-15 55.7 7.6 1.0 1 0 0 1 1 1 1 Major Facilitator Superfamily MFS_2 PF13347.6 BAD84388.1 - 0.0003 19.5 8.2 0.0003 19.5 8.2 1.5 1 1 0 1 1 1 1 MFS/sugar transport protein FPN1 PF06963.12 BAD84388.1 - 0.015 13.9 8.1 0.027 13.0 8.1 1.5 1 1 0 1 1 1 0 Ferroportin1 (FPN1) PPDK_N PF01326.19 BAD84389.1 - 2.5e-38 132.2 2.3 1.1e-23 84.0 0.8 3.6 2 2 2 4 4 4 3 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers PF00391.23 BAD84389.1 - 8.2e-20 70.3 0.2 2e-18 65.9 0.3 2.4 2 0 0 2 2 2 1 PEP-utilising enzyme, mobile domain GATase_5 PF13507.6 BAD84390.1 - 1e-51 175.6 0.0 1.2e-51 175.3 0.0 1.1 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.24 BAD84390.1 - 1.9e-11 44.0 0.0 2.9e-11 43.4 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family GATase PF00117.28 BAD84390.1 - 3e-10 40.2 0.0 5.8e-10 39.3 0.0 1.5 1 1 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.14 BAD84390.1 - 8.5e-10 38.5 0.0 4e-09 36.3 0.0 1.9 2 0 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain SNO PF01174.19 BAD84390.1 - 2.2e-09 37.5 0.0 4.4e-08 33.2 0.0 2.0 2 0 0 2 2 2 1 SNO glutamine amidotransferase family Peptidase_C26 PF07722.13 BAD84390.1 - 0.00062 19.6 0.0 0.0017 18.1 0.0 1.6 1 1 0 1 1 1 1 Peptidase C26 DUF4131 PF13567.6 BAD84390.1 - 0.0021 17.7 0.0 0.0036 17.0 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4131) RHS_repeat PF05593.14 BAD84390.1 - 0.056 14.0 0.0 0.16 12.5 0.0 1.7 2 0 0 2 2 2 0 RHS Repeat PurS PF02700.14 BAD84391.1 - 7.8e-26 90.1 0.0 8.8e-26 89.9 0.0 1.0 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase DUF1297 PF06973.12 BAD84392.1 - 7.8e-81 270.1 0.0 1.1e-80 269.6 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.12 BAD84392.1 - 4.8e-44 149.2 0.0 7.2e-44 148.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) GARS_A PF01071.19 BAD84393.1 - 1.8e-60 204.1 0.0 2.8e-60 203.4 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.15 BAD84393.1 - 6.7e-24 84.5 0.1 9e-23 80.9 0.1 2.2 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.16 BAD84393.1 - 7.7e-15 55.0 0.6 5.8e-13 48.9 0.2 3.2 3 0 0 3 3 3 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_3 PF02655.14 BAD84393.1 - 7.7e-06 26.0 0.0 1.6e-05 25.0 0.0 1.5 1 1 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.13 BAD84393.1 - 5.1e-05 22.9 0.0 8.9e-05 22.1 0.0 1.3 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp PF02222.22 BAD84393.1 - 0.0021 17.7 0.1 0.0049 16.5 0.1 1.6 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 BAD84393.1 - 0.0041 16.7 0.0 0.024 14.1 0.0 2.2 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_4 PF13535.6 BAD84393.1 - 0.0058 16.2 0.3 0.073 12.7 0.4 2.7 2 1 0 2 2 2 1 ATP-grasp domain TPR_8 PF13181.6 BAD84393.1 - 0.041 14.1 2.2 0.56 10.6 0.4 2.7 2 0 0 2 2 2 0 Tetratricopeptide repeat ATP-grasp_2 PF08442.10 BAD84393.1 - 0.049 13.2 0.0 0.093 12.3 0.0 1.4 1 0 0 1 1 1 0 ATP-grasp domain ATPgrasp_ST PF14397.6 BAD84393.1 - 0.13 11.4 0.0 0.44 9.7 0.0 1.7 2 0 0 2 2 2 0 Sugar-transfer associated ATP-grasp TPR_2 PF07719.17 BAD84393.1 - 1.6 9.0 3.5 13 6.2 1.2 2.8 2 0 0 2 2 2 0 Tetratricopeptide repeat ATPase PF06745.13 BAD84395.1 - 0.067 12.5 0.0 1.7 7.9 0.0 2.3 2 1 0 2 2 2 0 KaiC ATP-grasp PF02222.22 BAD84396.1 - 3.9e-56 189.3 0.0 6.4e-56 188.6 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 BAD84396.1 - 1.7e-08 34.3 0.0 2.6e-08 33.7 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Dala_Dala_lig_C PF07478.13 BAD84396.1 - 4.2e-08 33.0 0.0 6.8e-08 32.3 0.0 1.3 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus 2-Hacid_dh_C PF02826.19 BAD84396.1 - 0.00013 21.4 0.0 0.00023 20.6 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Epimerase PF01370.21 BAD84396.1 - 0.0009 18.8 0.0 0.0016 18.0 0.0 1.4 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GARS_A PF01071.19 BAD84396.1 - 0.004 16.9 0.2 0.007 16.1 0.0 1.5 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain PurK_C PF17769.1 BAD84396.1 - 0.024 14.3 0.0 0.054 13.2 0.0 1.6 1 0 0 1 1 1 0 Phosphoribosylaminoimidazole carboxylase C-terminal domain ATP-grasp_3 PF02655.14 BAD84396.1 - 0.071 13.2 0.0 0.12 12.4 0.0 1.5 1 1 0 1 1 1 0 ATP-grasp domain Pyr_redox_2 PF07992.14 BAD84396.1 - 0.1 11.8 0.0 0.19 10.9 0.0 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase AIRS_C PF02769.22 BAD84397.1 - 3.5e-26 92.2 0.0 6.4e-26 91.4 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 BAD84397.1 - 1.7e-19 70.2 1.8 2.8e-19 69.5 1.8 1.3 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain NOD PF06816.13 BAD84398.1 - 0.16 11.6 0.0 0.64 9.7 0.0 1.9 1 1 0 1 1 1 0 NOTCH protein SAICAR_synt PF01259.18 BAD84399.1 - 1.5e-67 227.9 0.0 1.6e-67 227.8 0.0 1.0 1 0 0 1 1 1 1 SAICAR synthetase DUF1748 PF08520.10 BAD84399.1 - 0.15 12.0 0.0 0.25 11.3 0.0 1.3 1 0 0 1 1 1 0 Fungal protein of unknown function (DUF1748) GATase_7 PF13537.6 BAD84400.1 - 2e-18 66.5 0.0 3.2e-18 65.8 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 BAD84400.1 - 5.6e-16 59.0 0.0 1.1e-15 58.1 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain Pribosyltran PF00156.27 BAD84400.1 - 1.8e-08 34.0 0.3 4.2e-08 32.9 0.3 1.6 1 1 0 1 1 1 1 Phosphoribosyl transferase domain GATase_4 PF13230.6 BAD84400.1 - 6.1e-07 28.6 0.0 1.7e-06 27.2 0.0 1.7 2 0 0 2 2 2 1 Glutamine amidotransferases class-II PRTase_2 PF15609.6 BAD84400.1 - 0.067 12.7 0.0 0.16 11.5 0.0 1.5 1 0 0 1 1 1 0 Phosphoribosyl transferase DUF3368 PF11848.8 BAD84401.1 - 1.4e-10 40.7 0.2 3.3e-10 39.6 0.2 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF3368) UPF0175 PF03683.13 BAD84402.1 - 6e-26 90.0 0.1 6.7e-26 89.8 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) Molybdopterin PF00384.22 BAD84403.1 - 8.2e-86 288.6 0.0 1e-85 288.4 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 BAD84403.1 - 4.4e-23 81.4 0.0 9.5e-23 80.3 0.0 1.6 2 0 0 2 2 2 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 BAD84403.1 - 2.2e-07 30.7 0.5 4.5e-07 29.8 0.5 1.6 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain CDC48_N PF02359.18 BAD84403.1 - 0.017 15.3 0.0 0.1 12.8 0.0 2.2 2 0 0 2 2 2 0 Cell division protein 48 (CDC48), N-terminal domain DUF4932 PF16286.5 BAD84404.1 - 2.4e-19 69.8 1.4 3.8e-19 69.1 1.4 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4932) S_layer_C PF05124.12 BAD84404.1 - 3.1e-05 24.1 0.2 0.00012 22.2 0.2 1.9 1 1 0 1 1 1 1 S-layer like family, C-terminal region BcsB PF03170.13 BAD84404.1 - 0.00052 18.5 0.0 0.00073 18.0 0.0 1.2 1 0 0 1 1 1 1 Bacterial cellulose synthase subunit SSP160 PF06933.11 BAD84404.1 - 0.9 7.7 5.3 1.3 7.2 5.3 1.1 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 SNO PF01174.19 BAD84405.1 - 1.5e-57 194.5 0.0 1.6e-57 194.4 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.14 BAD84405.1 - 7.6e-11 42.0 0.0 9.1e-11 41.7 0.0 1.2 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.28 BAD84405.1 - 5e-08 32.9 0.0 1.5e-07 31.4 0.0 1.7 1 1 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_S51 PF03575.17 BAD84405.1 - 1e-06 28.5 0.0 1.4e-06 28.2 0.0 1.1 1 0 0 1 1 1 1 Peptidase family S51 DJ-1_PfpI PF01965.24 BAD84405.1 - 0.0086 15.9 0.0 0.012 15.4 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family SOR_SNZ PF01680.17 BAD84406.1 - 1.8e-99 331.7 6.2 4.8e-96 320.5 6.7 2.3 2 0 0 2 2 2 2 SOR/SNZ family ThiG PF05690.14 BAD84406.1 - 1.5e-10 40.8 6.0 2.8e-08 33.4 0.1 2.8 3 0 0 3 3 3 2 Thiazole biosynthesis protein ThiG Dus PF01207.17 BAD84406.1 - 0.00023 20.4 1.4 0.28 10.2 0.0 2.2 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NanE PF04131.14 BAD84406.1 - 0.0036 16.5 2.1 0.056 12.6 0.0 2.7 2 1 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase NMO PF03060.15 BAD84406.1 - 0.008 15.6 3.7 0.17 11.2 0.0 2.6 2 1 0 2 2 2 1 Nitronate monooxygenase FMN_dh PF01070.18 BAD84406.1 - 0.025 13.6 0.6 0.33 9.9 0.0 2.3 2 0 0 2 2 2 0 FMN-dependent dehydrogenase IGPS PF00218.21 BAD84406.1 - 0.03 13.5 0.2 0.66 9.1 0.0 2.4 2 1 0 2 2 2 0 Indole-3-glycerol phosphate synthase QRPTase_C PF01729.19 BAD84407.1 - 2.6e-51 173.7 0.9 3.8e-51 173.2 0.9 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 BAD84407.1 - 1.3e-31 108.5 0.2 2.5e-31 107.6 0.2 1.5 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain B12-binding PF02310.19 BAD84407.1 - 0.00012 22.1 3.2 0.00062 19.8 0.3 2.7 2 1 1 3 3 3 1 B12 binding domain PRAI PF00697.22 BAD84407.1 - 0.0067 16.2 0.0 0.012 15.4 0.0 1.3 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Ribul_P_3_epim PF00834.19 BAD84407.1 - 0.0091 15.4 0.2 0.032 13.6 0.1 1.9 1 1 0 1 1 1 1 Ribulose-phosphate 3 epimerase family Biotin_lipoyl PF00364.22 BAD84407.1 - 0.011 15.6 1.6 4.6 7.1 0.1 2.6 2 0 0 2 2 2 0 Biotin-requiring enzyme TMP-TENI PF02581.17 BAD84407.1 - 0.018 14.4 0.0 0.041 13.2 0.0 1.6 1 0 0 1 1 1 0 Thiamine monophosphate synthase ALAD PF00490.21 BAD84407.1 - 0.026 13.7 0.1 0.041 13.1 0.1 1.2 1 0 0 1 1 1 0 Delta-aminolevulinic acid dehydratase Glu_synthase PF01645.17 BAD84407.1 - 0.036 13.2 0.5 0.13 11.3 0.0 2.1 2 1 1 3 3 3 0 Conserved region in glutamate synthase DUF5010 PF16402.5 BAD84407.1 - 0.038 12.8 0.0 0.058 12.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5010) IMPDH PF00478.25 BAD84407.1 - 0.054 12.5 0.9 0.08 11.9 0.9 1.2 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain DAHP_snth_FXD PF18152.1 BAD84407.1 - 0.81 9.6 5.5 1.4 8.8 0.2 3.2 2 1 1 3 3 3 0 DAHP synthase ferredoxin-like domain NTP_transferase PF00483.23 BAD84408.1 - 4.2e-41 141.2 0.0 5.5e-41 140.8 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 BAD84408.1 - 1.6e-08 33.9 16.8 0.00031 20.4 6.3 4.0 1 1 2 3 3 3 3 Bacterial transferase hexapeptide (six repeats) DUF4954 PF16314.5 BAD84408.1 - 9.1e-05 20.8 1.3 0.00014 20.2 1.3 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4954) Fucokinase PF07959.12 BAD84408.1 - 0.00069 18.7 0.0 0.0043 16.1 0.0 1.9 2 0 0 2 2 2 1 L-fucokinase NTP_transf_3 PF12804.7 BAD84408.1 - 0.06 13.7 0.0 0.21 12.0 0.0 1.9 2 0 0 2 2 2 0 MobA-like NTP transferase domain Hexapep_2 PF14602.6 BAD84408.1 - 1.2 8.9 13.4 1.3 8.8 1.7 3.8 1 1 3 4 4 4 0 Hexapeptide repeat of succinyl-transferase HEPN PF05168.14 BAD84410.1 - 6.4e-28 97.3 6.2 7.6e-28 97.0 6.2 1.0 1 0 0 1 1 1 1 HEPN domain TPR_2 PF07719.17 BAD84410.1 - 0.011 15.8 2.0 0.05 13.7 0.4 2.7 2 1 0 2 2 2 0 Tetratricopeptide repeat NICE-3 PF07406.11 BAD84410.1 - 0.017 15.1 0.5 0.024 14.6 0.4 1.3 1 1 0 1 1 1 0 NICE-3 protein PLU-1 PF08429.11 BAD84410.1 - 0.036 13.2 0.1 0.061 12.5 0.1 1.5 1 1 0 1 1 1 0 PLU-1-like protein TPR_1 PF00515.28 BAD84410.1 - 0.3 11.0 3.9 0.51 10.3 0.3 2.7 2 1 1 3 3 3 0 Tetratricopeptide repeat TPR_8 PF13181.6 BAD84410.1 - 0.32 11.3 3.9 5.3 7.5 0.1 3.0 2 1 1 3 3 3 0 Tetratricopeptide repeat Vps23_core PF09454.10 BAD84410.1 - 0.57 10.2 4.1 4.7 7.2 0.2 3.1 3 1 0 3 3 3 0 Vps23 core domain NTP_transf_2 PF01909.23 BAD84411.1 - 6.8e-09 35.9 0.0 9.5e-09 35.4 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 BAD84411.1 - 7.3e-08 32.4 0.0 8.7e-08 32.1 0.0 1.3 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DNA_pol_B_palm PF14792.6 BAD84411.1 - 0.043 14.0 0.0 0.062 13.5 0.0 1.2 1 0 0 1 1 1 0 DNA polymerase beta palm MFS_1 PF07690.16 BAD84412.1 - 1.7e-10 40.4 29.2 1.7e-10 40.4 29.2 2.9 1 1 1 2 2 2 2 Major Facilitator Superfamily Syntaxin-5_N PF11416.8 BAD84412.1 - 0.18 11.1 0.0 0.29 10.4 0.0 1.4 1 0 0 1 1 1 0 Syntaxin-5 N-terminal, Sly1p-binding domain Methyltransf_11 PF08241.12 BAD84413.1 - 4.4e-20 72.1 0.0 6.9e-20 71.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 BAD84413.1 - 4.8e-19 68.9 0.0 8e-19 68.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 BAD84413.1 - 5e-14 52.5 0.0 6.6e-14 52.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 BAD84413.1 - 7.8e-11 42.6 0.0 1.4e-10 41.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 BAD84413.1 - 1.1e-09 38.3 0.0 2.7e-09 37.0 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 BAD84413.1 - 5.6e-08 32.4 0.0 6.2e-07 29.0 0.0 2.0 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_8 PF05148.15 BAD84413.1 - 2.5e-06 27.5 0.0 1.3e-05 25.2 0.0 1.9 1 1 0 1 1 1 1 Hypothetical methyltransferase MetW PF07021.12 BAD84413.1 - 0.00034 20.3 0.0 0.00048 19.8 0.0 1.4 1 1 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_2 PF00891.18 BAD84413.1 - 0.0033 16.8 0.1 0.043 13.1 0.1 2.0 1 1 0 1 1 1 1 O-methyltransferase domain NNMT_PNMT_TEMT PF01234.17 BAD84413.1 - 0.011 14.9 0.0 0.018 14.2 0.0 1.4 1 0 0 1 1 1 0 NNMT/PNMT/TEMT family CMAS PF02353.20 BAD84413.1 - 0.018 14.4 0.1 0.13 11.5 0.1 2.0 1 1 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_9 PF08003.11 BAD84413.1 - 0.039 12.9 0.0 0.052 12.5 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1698) MTS PF05175.14 BAD84413.1 - 0.077 12.5 0.0 0.66 9.5 0.0 2.0 2 0 0 2 2 2 0 Methyltransferase small domain AdoMet_MTase PF07757.13 BAD84413.1 - 0.16 12.3 0.0 0.27 11.6 0.0 1.4 1 0 0 1 1 1 0 Predicted AdoMet-dependent methyltransferase Methyltransf_29 PF03141.16 BAD84413.1 - 0.21 10.1 0.1 0.61 8.6 0.0 1.7 2 0 0 2 2 2 0 Putative S-adenosyl-L-methionine-dependent methyltransferase Penicillinase_R PF03965.16 BAD84414.1 - 0.00013 22.3 0.0 0.00024 21.4 0.0 1.4 1 0 0 1 1 1 1 Penicillinase repressor HTH_20 PF12840.7 BAD84414.1 - 0.00014 21.8 0.8 0.00025 21.0 0.2 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 BAD84414.1 - 0.0015 18.3 0.1 0.0079 16.0 0.1 2.2 1 1 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_12 PF08461.10 BAD84414.1 - 0.018 15.0 1.5 0.018 15.0 1.5 1.9 2 0 0 2 2 2 0 Ribonuclease R winged-helix domain HTH_11 PF08279.12 BAD84414.1 - 0.02 14.8 0.7 0.14 12.1 0.3 2.5 2 1 0 2 2 2 0 HTH domain FUR PF01475.19 BAD84414.1 - 0.021 15.0 0.0 0.035 14.3 0.0 1.4 1 0 0 1 1 1 0 Ferric uptake regulator family MarR_2 PF12802.7 BAD84414.1 - 0.031 14.2 2.0 0.37 10.7 2.0 2.3 1 1 0 1 1 1 0 MarR family Replic_Relax PF13814.6 BAD84414.1 - 0.034 14.2 0.1 0.062 13.4 0.1 1.3 1 0 0 1 1 1 0 Replication-relaxation PurL_C PF16904.5 BAD84414.1 - 0.053 13.8 0.0 0.084 13.2 0.0 1.4 1 0 0 1 1 1 0 Phosphoribosylformylglycinamidine synthase II C-terminus Ribosomal_S19e PF01090.19 BAD84414.1 - 0.062 13.0 0.2 0.15 11.7 0.2 1.6 1 1 1 2 2 2 0 Ribosomal protein S19e HTH_36 PF13730.6 BAD84414.1 - 0.071 13.1 0.2 0.3 11.1 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain FtsK_gamma PF09397.10 BAD84414.1 - 0.084 12.7 0.5 0.83 9.5 0.5 2.3 1 1 0 1 1 1 0 Ftsk gamma domain HTH_24 PF13412.6 BAD84414.1 - 0.14 11.8 1.7 1.8 8.2 0.1 2.6 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding PEP-utilisers_N PF05524.13 BAD84414.1 - 0.38 10.9 2.9 1.7 8.8 0.4 2.1 1 1 0 2 2 2 0 PEP-utilising enzyme, N-terminal MSA-2c PF12238.8 BAD84415.1 - 0.033 14.2 0.3 0.038 14.0 0.3 1.3 1 0 0 1 1 1 0 Merozoite surface antigen 2c GCIP PF13324.6 BAD84415.1 - 0.047 13.3 1.4 0.13 11.8 0.9 1.9 1 1 0 1 1 1 0 Grap2 and cyclin-D-interacting CorA PF01544.18 BAD84415.1 - 0.054 12.8 0.5 0.073 12.4 0.5 1.2 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein CCDC24 PF15669.5 BAD84415.1 - 0.15 11.9 3.7 0.11 12.4 2.0 1.6 2 0 0 2 2 2 0 Coiled-coil domain-containing protein 24 family Seadorna_VP6 PF07407.11 BAD84415.1 - 0.16 10.9 1.5 0.19 10.7 1.5 1.1 1 0 0 1 1 1 0 Seadornavirus VP6 protein Acetyltransf_1 PF00583.25 BAD84418.1 - 0.0011 19.2 0.0 0.0013 19.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 BAD84418.1 - 0.0045 17.4 0.0 0.0058 17.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain ABC_tran PF00005.27 BAD84419.1 - 1.8e-25 90.1 0.0 4.1e-25 88.9 0.0 1.6 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 BAD84419.1 - 5.2e-09 36.3 0.2 0.0018 18.2 0.1 2.4 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA PF00004.29 BAD84419.1 - 2.7e-05 24.6 0.0 0.0041 17.6 0.0 2.5 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 BAD84419.1 - 9e-05 22.5 0.1 0.05 13.6 0.0 2.8 3 1 0 3 3 2 1 AAA domain (dynein-related subfamily) AAA_23 PF13476.6 BAD84419.1 - 0.00011 22.8 0.1 0.00035 21.1 0.0 1.8 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.19 BAD84419.1 - 0.00018 21.0 0.0 0.016 14.7 0.0 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 BAD84419.1 - 0.003 17.9 0.0 0.0043 17.5 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.6 BAD84419.1 - 0.0035 17.1 0.1 0.068 12.9 0.0 2.3 3 0 0 3 3 2 1 AAA ATPase domain AAA_7 PF12775.7 BAD84419.1 - 0.0046 16.5 0.0 0.013 15.0 0.0 1.6 2 0 0 2 2 2 1 P-loop containing dynein motor region RsgA_GTPase PF03193.16 BAD84419.1 - 0.0048 16.8 0.0 0.011 15.6 0.0 1.6 2 0 0 2 2 1 1 RsgA GTPase Rad17 PF03215.15 BAD84419.1 - 0.0053 16.7 0.0 0.013 15.5 0.0 1.6 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_22 PF13401.6 BAD84419.1 - 0.0055 17.0 0.0 0.014 15.7 0.0 1.8 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 BAD84419.1 - 0.0056 16.4 0.0 0.38 10.5 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein TsaE PF02367.17 BAD84419.1 - 0.0067 16.4 0.0 0.012 15.6 0.0 1.4 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_29 PF13555.6 BAD84419.1 - 0.0076 16.0 0.0 0.015 15.0 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_28 PF13521.6 BAD84419.1 - 0.013 15.8 0.0 0.029 14.6 0.0 1.7 1 1 1 2 2 1 0 AAA domain AAA_33 PF13671.6 BAD84419.1 - 0.019 15.1 0.0 0.03 14.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 BAD84419.1 - 0.022 14.4 0.0 0.035 13.8 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_18 PF13238.6 BAD84419.1 - 0.023 15.2 0.0 0.057 14.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 BAD84419.1 - 0.026 14.5 0.2 0.13 12.1 0.0 2.3 3 0 0 3 3 3 0 ATPase domain predominantly from Archaea AAA_13 PF13166.6 BAD84419.1 - 0.026 13.2 0.0 0.039 12.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 BAD84419.1 - 0.037 13.7 0.0 0.051 13.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_PrkA PF08298.11 BAD84419.1 - 0.046 12.6 0.0 0.073 12.0 0.0 1.3 1 0 0 1 1 1 0 PrkA AAA domain AAA_14 PF13173.6 BAD84419.1 - 0.054 13.5 0.4 0.61 10.1 0.0 2.6 3 1 0 3 3 3 0 AAA domain APS_kinase PF01583.20 BAD84419.1 - 0.058 13.3 0.0 0.1 12.5 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase RuvB_N PF05496.12 BAD84419.1 - 0.064 13.0 0.1 0.21 11.3 0.0 1.9 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain AAA_2 PF07724.14 BAD84419.1 - 0.07 13.2 0.2 13 5.8 0.0 2.4 2 1 0 2 2 2 0 AAA domain (Cdc48 subfamily) NACHT PF05729.12 BAD84419.1 - 0.071 13.0 0.0 0.14 12.1 0.0 1.5 1 0 0 1 1 1 0 NACHT domain Mg_chelatase PF01078.21 BAD84419.1 - 0.088 12.2 0.0 0.62 9.4 0.0 2.1 2 1 0 2 2 2 0 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.22 BAD84419.1 - 0.1 13.0 0.0 0.31 11.4 0.0 1.8 2 0 0 2 2 1 0 RNA helicase AAA_24 PF13479.6 BAD84419.1 - 0.1 12.3 0.0 0.16 11.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain PhoH PF02562.16 BAD84419.1 - 0.13 11.7 0.0 1 8.7 0.0 2.0 2 0 0 2 2 2 0 PhoH-like protein Zeta_toxin PF06414.12 BAD84419.1 - 0.14 11.5 0.0 0.23 10.7 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin YlzJ PF14035.6 BAD84419.1 - 0.19 12.0 0.0 0.46 10.7 0.0 1.6 1 0 0 1 1 1 0 YlzJ-like protein ABC2_membrane PF01061.24 BAD84420.1 - 6.3e-11 42.1 27.7 8.8e-11 41.6 27.7 1.2 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 BAD84420.1 - 8.3e-05 21.9 31.3 8.3e-05 21.9 31.3 1.9 1 1 1 2 2 2 1 ABC-2 family transporter protein Acetyltransf_1 PF00583.25 BAD84421.1 - 7.1e-14 52.0 0.1 1.4e-13 51.1 0.1 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 BAD84421.1 - 1.1e-09 38.5 0.1 1.8e-09 37.9 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 BAD84421.1 - 3.7e-06 27.7 0.1 9.1e-06 26.4 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 BAD84421.1 - 0.00017 21.5 0.0 0.00069 19.6 0.0 1.9 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 BAD84421.1 - 0.00042 20.2 0.0 0.00082 19.3 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 BAD84421.1 - 0.0064 16.6 0.0 0.058 13.5 0.0 2.2 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 BAD84421.1 - 0.0091 16.1 0.0 0.054 13.6 0.0 2.0 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain DUF515 PF04415.12 BAD84421.1 - 0.12 10.7 0.1 0.16 10.3 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF515) Acetyltransf_18 PF18014.1 BAD84421.1 - 0.12 12.2 0.0 0.5 10.2 0.0 2.0 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 BAD84422.1 - 3.8e-30 105.4 0.2 5.3e-30 104.9 0.2 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 BAD84422.1 - 6.7e-17 62.1 0.0 9.4e-17 61.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 BAD84422.1 - 3.9e-14 52.9 0.0 5.1e-14 52.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_8 PF13523.6 BAD84422.1 - 1.4e-07 31.3 0.7 1.5e-06 28.0 0.7 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 BAD84422.1 - 0.00016 22.0 0.2 0.00028 21.3 0.2 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 BAD84422.1 - 0.011 15.6 0.0 0.016 15.1 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain FR47 PF08445.10 BAD84422.1 - 0.083 12.9 0.0 0.2 11.7 0.0 1.7 1 0 0 1 1 1 0 FR47-like protein Methyltransf_31 PF13847.6 BAD84423.1 - 8.3e-22 77.6 0.0 1.1e-21 77.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 BAD84423.1 - 3.3e-16 59.7 0.1 5.4e-16 59.0 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 BAD84423.1 - 5.4e-16 59.1 0.0 8.8e-16 58.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 BAD84423.1 - 9.5e-12 45.1 0.0 1.2e-11 44.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 BAD84423.1 - 2.1e-11 44.4 0.0 3e-11 43.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 BAD84423.1 - 5e-11 42.4 0.0 8e-11 41.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Ubie_methyltran PF01209.18 BAD84423.1 - 4.2e-09 36.1 0.2 5.4e-09 35.7 0.2 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_32 PF13679.6 BAD84423.1 - 1.9e-06 28.0 0.0 2.6e-06 27.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_9 PF08003.11 BAD84423.1 - 5.9e-06 25.4 0.1 7.3e-06 25.1 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) MetW PF07021.12 BAD84423.1 - 8.5e-06 25.5 0.1 1.2e-05 25.0 0.1 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_4 PF02390.17 BAD84423.1 - 9.9e-06 25.1 0.1 3.4e-05 23.4 0.1 1.8 1 1 1 2 2 2 1 Putative methyltransferase PrmA PF06325.13 BAD84423.1 - 1e-05 25.1 0.0 1.2e-05 24.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) PCMT PF01135.19 BAD84423.1 - 1.7e-05 24.7 0.0 2.6e-05 24.1 0.0 1.3 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_2 PF00891.18 BAD84423.1 - 2.6e-05 23.6 0.1 3.5e-05 23.2 0.1 1.2 1 0 0 1 1 1 1 O-methyltransferase domain NodS PF05401.11 BAD84423.1 - 9.4e-05 22.1 0.0 0.00012 21.8 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) ADH_zinc_N PF00107.26 BAD84423.1 - 0.00012 22.1 0.0 0.00029 20.8 0.0 1.7 1 1 0 1 1 1 1 Zinc-binding dehydrogenase TehB PF03848.14 BAD84423.1 - 0.00026 20.5 0.0 0.00033 20.1 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB CMAS PF02353.20 BAD84423.1 - 0.00038 19.8 0.1 0.00049 19.5 0.1 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_18 PF12847.7 BAD84423.1 - 0.0016 18.4 0.0 0.0025 17.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 BAD84423.1 - 0.0023 17.6 0.0 0.0028 17.3 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_PK PF05891.12 BAD84423.1 - 0.021 14.3 0.2 0.041 13.4 0.2 1.5 1 1 0 1 1 1 0 AdoMet dependent proline di-methyltransferase DOT1 PF08123.13 BAD84423.1 - 0.021 14.3 0.4 0.029 13.9 0.4 1.4 1 1 0 1 1 1 0 Histone methylation protein DOT1 Pox_MCEL PF03291.16 BAD84423.1 - 0.035 13.2 0.0 0.11 11.6 0.0 1.7 1 1 0 1 1 1 0 mRNA capping enzyme GidB PF02527.15 BAD84423.1 - 0.053 12.8 0.0 0.07 12.4 0.0 1.2 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G FmrO PF07091.11 BAD84423.1 - 0.063 12.8 0.0 0.15 11.5 0.0 1.6 1 1 0 2 2 2 0 Ribosomal RNA methyltransferase (FmrO) Methyltransf_5 PF01795.19 BAD84423.1 - 0.072 12.6 0.0 0.61 9.5 0.0 1.9 1 1 1 2 2 2 0 MraW methylase family RrnaAD PF00398.20 BAD84423.1 - 0.17 10.9 0.0 0.24 10.4 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase MFS_1 PF07690.16 BAD84424.1 - 3.3e-16 59.2 31.1 3.3e-16 59.2 31.1 2.7 1 1 1 2 2 2 1 Major Facilitator Superfamily MFS_1_like PF12832.7 BAD84424.1 - 0.00022 20.2 15.9 0.0054 15.6 11.9 2.8 1 1 1 2 2 2 1 MFS_1 like family MFS_3 PF05977.13 BAD84424.1 - 0.16 10.4 12.3 0.031 12.7 0.3 2.2 2 0 0 2 2 2 0 Transmembrane secretion effector TctA PF01970.16 BAD84426.1 - 0.026 13.3 5.8 0.03 13.0 5.8 1.1 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter TctA family DUF2070 PF09843.9 BAD84426.1 - 0.18 10.0 6.6 0.22 9.8 6.6 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) MerC PF03203.14 BAD84426.1 - 0.3 11.6 7.6 0.69 10.4 7.7 1.6 1 1 0 1 1 1 0 MerC mercury resistance protein Sigma_M_inh PF17453.2 BAD84426.1 - 0.58 10.6 10.2 0.52 10.8 9.4 1.4 1 1 0 1 1 1 0 Sigma-M inhibitor YfhO PF09586.10 BAD84426.1 - 0.96 7.6 5.6 1.3 7.1 5.5 1.3 1 1 0 1 1 1 0 Bacterial membrane protein YfhO VirB3 PF05101.13 BAD84426.1 - 1.7 8.9 13.5 1.2e+02 3.0 13.5 2.1 1 1 0 1 1 1 0 Type IV secretory pathway, VirB3-like protein DUF4229 PF14012.6 BAD84426.1 - 7.2 6.8 14.1 0.1 12.7 1.4 2.7 1 1 2 3 3 3 0 Protein of unknown function (DUF4229) CN_hydrolase PF00795.22 BAD84427.1 - 2.2e-17 63.2 0.0 2.9e-17 62.9 0.0 1.1 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase tRNA_bind PF01588.20 BAD84428.1 - 7.8e-26 90.0 0.0 8.7e-26 89.9 0.0 1.0 1 0 0 1 1 1 1 Putative tRNA binding domain Arginase PF00491.21 BAD84429.1 - 3.1e-72 243.4 0.0 3.8e-72 243.1 0.0 1.1 1 0 0 1 1 1 1 Arginase family Radical_SAM PF04055.21 BAD84429.1 - 0.076 13.4 0.0 0.26 11.6 0.0 1.7 2 0 0 2 2 2 0 Radical SAM superfamily DSPc PF00782.20 BAD84430.1 - 2.3e-17 63.1 0.0 2.7e-17 62.8 0.0 1.2 1 0 0 1 1 1 1 Dual specificity phosphatase, catalytic domain CDKN3 PF05706.12 BAD84430.1 - 7.2e-11 42.0 0.0 7.7e-11 41.9 0.0 1.1 1 0 0 1 1 1 1 Cyclin-dependent kinase inhibitor 3 (CDKN3) Y_phosphatase PF00102.27 BAD84430.1 - 3.2e-08 33.4 0.0 4.1e-08 33.1 0.0 1.1 1 0 0 1 1 1 1 Protein-tyrosine phosphatase PTPlike_phytase PF14566.6 BAD84430.1 - 2.4e-05 24.5 0.1 0.0027 17.8 0.0 2.4 2 1 1 3 3 3 2 Inositol hexakisphosphate tRNA-synt_His PF13393.6 BAD84431.1 - 1.4e-23 83.6 0.0 1.2e-20 74.0 0.0 2.8 1 1 0 1 1 1 1 Histidyl-tRNA synthetase HisG PF01634.18 BAD84432.1 - 1e-45 155.6 0.0 1.2e-45 155.4 0.0 1.0 1 0 0 1 1 1 1 ATP phosphoribosyltransferase Histidinol_dh PF00815.20 BAD84433.1 - 1.9e-133 445.5 0.0 1.4e-90 304.2 0.0 2.0 1 1 1 2 2 2 2 Histidinol dehydrogenase CHMI PF02962.15 BAD84433.1 - 0.15 12.4 0.0 0.35 11.2 0.0 1.6 1 0 0 1 1 1 0 5-carboxymethyl-2-hydroxymuconate isomerase IGPD PF00475.18 BAD84434.1 - 2.3e-36 125.2 0.0 3.1e-36 124.8 0.0 1.2 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase GATase PF00117.28 BAD84435.1 - 1.4e-19 70.6 0.0 1.8e-19 70.2 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 BAD84435.1 - 0.00018 21.3 0.1 0.022 14.5 0.1 2.2 2 0 0 2 2 2 2 Peptidase C26 GATase_3 PF07685.14 BAD84435.1 - 0.00072 19.2 0.0 0.001 18.7 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain His_biosynth PF00977.21 BAD84436.1 - 1.7e-57 194.5 1.5 2e-57 194.3 1.5 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein PcrB PF01884.17 BAD84436.1 - 0.02 14.4 1.5 0.14 11.6 0.1 2.0 2 0 0 2 2 2 0 PcrB family IGPS PF00218.21 BAD84436.1 - 0.036 13.2 0.0 1.1 8.3 0.0 2.0 2 0 0 2 2 2 0 Indole-3-glycerol phosphate synthase FMN_dh PF01070.18 BAD84436.1 - 0.064 12.3 0.4 1.8 7.5 0.1 2.1 1 1 1 2 2 2 0 FMN-dependent dehydrogenase His_biosynth PF00977.21 BAD84437.1 - 5.7e-88 294.2 0.5 6.4e-88 294.1 0.5 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein ThiG PF05690.14 BAD84437.1 - 1e-09 38.1 0.1 0.001 18.4 0.0 2.2 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG NMO PF03060.15 BAD84437.1 - 3.3e-08 33.3 2.1 5.2e-06 26.1 0.3 2.3 2 1 0 2 2 2 2 Nitronate monooxygenase Dus PF01207.17 BAD84437.1 - 4.9e-07 29.2 0.1 2.7e-05 23.4 0.1 2.1 2 0 0 2 2 2 1 Dihydrouridine synthase (Dus) TMP-TENI PF02581.17 BAD84437.1 - 1.8e-06 27.4 0.3 0.018 14.4 0.0 2.6 2 1 1 3 3 3 2 Thiamine monophosphate synthase IMPDH PF00478.25 BAD84437.1 - 4.4e-06 25.9 0.7 0.045 12.7 0.1 2.1 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain DHO_dh PF01180.21 BAD84437.1 - 5.4e-05 22.5 0.3 0.23 10.6 0.1 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase G3P_antiterm PF04309.12 BAD84437.1 - 0.00034 20.1 0.2 0.23 10.9 0.1 2.2 2 0 0 2 2 2 2 Glycerol-3-phosphate responsive antiterminator PcrB PF01884.17 BAD84437.1 - 0.0028 17.1 0.3 0.0057 16.1 0.3 1.5 1 0 0 1 1 1 1 PcrB family FMN_dh PF01070.18 BAD84437.1 - 0.016 14.3 1.8 0.31 10.0 1.8 2.2 1 1 0 1 1 1 0 FMN-dependent dehydrogenase Trp_syntA PF00290.20 BAD84437.1 - 0.018 13.9 0.1 0.032 13.1 0.1 1.4 1 0 0 1 1 1 0 Tryptophan synthase alpha chain SAP PF02037.27 BAD84437.1 - 0.07 12.9 0.0 0.38 10.5 0.0 2.2 3 0 0 3 3 3 0 SAP domain PRA-CH PF01502.18 BAD84438.1 - 2.2e-31 107.5 0.0 4e-31 106.7 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase PRA-PH PF01503.17 BAD84438.1 - 1.4e-15 57.5 0.5 1.4e-15 57.5 0.5 1.5 2 0 0 2 2 2 1 Phosphoribosyl-ATP pyrophosphohydrolase Aminotran_1_2 PF00155.21 BAD84439.1 - 2.4e-49 168.4 0.0 3.2e-49 168.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Alliinase_C PF04864.13 BAD84439.1 - 0.00047 19.1 0.0 0.00067 18.6 0.0 1.2 1 0 0 1 1 1 1 Allinase Aminotran_5 PF00266.19 BAD84439.1 - 0.0022 17.0 0.0 0.0037 16.3 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V HAD_2 PF13419.6 BAD84440.1 - 8.8e-06 25.9 0.0 0.081 13.0 0.0 2.4 2 0 0 2 2 2 2 Haloacid dehalogenase-like hydrolase HAD PF12710.7 BAD84440.1 - 0.007 16.8 0.1 0.044 14.2 0.0 2.2 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 BAD84440.1 - 0.069 13.4 0.1 0.28 11.5 0.1 2.0 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase IGPS PF00218.21 BAD84441.1 - 1e-58 198.5 0.0 1.2e-58 198.3 0.0 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase G3P_antiterm PF04309.12 BAD84441.1 - 0.0087 15.5 0.0 0.13 11.6 0.0 2.3 2 0 0 2 2 2 1 Glycerol-3-phosphate responsive antiterminator His_biosynth PF00977.21 BAD84441.1 - 0.032 13.7 0.0 8 5.8 0.0 2.4 2 1 0 2 2 2 0 Histidine biosynthesis protein Hydrolase PF00702.26 BAD84441.1 - 0.1 12.9 0.1 0.18 12.1 0.0 1.5 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase Glycos_transf_3 PF00591.21 BAD84442.1 - 6.6e-81 271.6 0.0 8.1e-81 271.3 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 BAD84442.1 - 7.1e-13 48.2 0.2 2.8e-12 46.3 0.1 2.1 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain Chorismate_bind PF00425.18 BAD84443.1 - 2.8e-92 308.9 0.0 3.9e-91 305.2 0.0 2.2 2 0 0 2 2 2 1 chorismate binding enzyme Anth_synt_I_N PF04715.13 BAD84443.1 - 2.8e-16 60.0 0.1 2.8e-14 53.5 0.0 2.7 3 0 0 3 3 3 2 Anthranilate synthase component I, N terminal region GATase PF00117.28 BAD84444.1 - 6e-44 150.1 0.0 7e-44 149.9 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 BAD84444.1 - 4.7e-12 46.1 0.3 3.9e-11 43.1 0.3 2.0 1 1 0 1 1 1 1 Peptidase C26 PRAI PF00697.22 BAD84445.1 - 3.3e-31 108.6 0.0 4e-31 108.3 0.0 1.1 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase PALP PF00291.25 BAD84446.1 - 4.2e-47 161.0 0.8 5.7e-47 160.5 0.8 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Trp_syntA PF00290.20 BAD84447.1 - 8.1e-79 264.1 0.0 1e-78 263.8 0.0 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain His_biosynth PF00977.21 BAD84447.1 - 3.8e-08 33.1 0.0 1.4e-07 31.2 0.0 1.8 1 1 1 2 2 2 1 Histidine biosynthesis protein Ribul_P_3_epim PF00834.19 BAD84447.1 - 4.1e-05 23.0 0.0 5.9e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 Ribulose-phosphate 3 epimerase family PcrB PF01884.17 BAD84447.1 - 0.0027 17.2 0.0 0.0076 15.7 0.0 1.7 2 0 0 2 2 2 1 PcrB family TMP-TENI PF02581.17 BAD84447.1 - 0.004 16.5 0.0 0.0094 15.3 0.0 1.6 2 0 0 2 2 2 1 Thiamine monophosphate synthase PA PF02225.22 BAD84447.1 - 0.03 14.3 0.1 7.1 6.7 0.0 2.3 2 0 0 2 2 2 0 PA domain Radical_SAM PF04055.21 BAD84447.1 - 0.046 14.1 0.0 0.32 11.4 0.0 2.1 1 1 1 2 2 2 0 Radical SAM superfamily FMN_dh PF01070.18 BAD84447.1 - 0.049 12.6 0.0 0.074 12.1 0.0 1.2 1 0 0 1 1 1 0 FMN-dependent dehydrogenase NMO PF03060.15 BAD84447.1 - 0.053 12.9 0.0 0.097 12.0 0.0 1.4 1 0 0 1 1 1 0 Nitronate monooxygenase IGPS PF00218.21 BAD84447.1 - 0.069 12.3 0.0 0.34 10.0 0.0 1.9 2 0 0 2 2 2 0 Indole-3-glycerol phosphate synthase G3P_antiterm PF04309.12 BAD84447.1 - 0.091 12.2 0.0 0.25 10.7 0.0 1.8 1 1 0 1 1 1 0 Glycerol-3-phosphate responsive antiterminator HisG_C PF08029.11 BAD84447.1 - 0.12 12.5 0.1 18 5.6 0.0 2.4 2 0 0 2 2 2 0 HisG, C-terminal domain NanE PF04131.14 BAD84447.1 - 0.13 11.4 0.0 0.19 10.9 0.0 1.2 1 0 0 1 1 1 0 Putative N-acetylmannosamine-6-phosphate epimerase QRPTase_C PF01729.19 BAD84447.1 - 0.17 11.7 0.0 0.33 10.7 0.0 1.4 1 0 0 1 1 1 0 Quinolinate phosphoribosyl transferase, C-terminal domain BtpA PF03437.15 BAD84447.1 - 0.18 11.2 0.0 0.3 10.5 0.0 1.3 1 0 0 1 1 1 0 BtpA family PDH PF02153.17 BAD84448.1 - 8.4e-12 44.6 0.0 1e-11 44.4 0.0 1.2 1 0 0 1 1 1 1 Prephenate dehydrogenase 2-Hacid_dh_C PF02826.19 BAD84448.1 - 0.002 17.5 0.0 0.0033 16.8 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Gp_dh_N PF00044.24 BAD84448.1 - 0.025 14.9 0.0 0.042 14.2 0.0 1.5 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Muraidase PF11860.8 BAD84448.1 - 0.058 13.6 0.0 0.1 12.8 0.0 1.4 1 0 0 1 1 1 0 N-acetylmuramidase Nif11 PF07862.11 BAD84448.1 - 0.46 10.8 1.8 0.94 9.8 0.1 2.4 3 0 0 3 3 3 0 Nif11 domain Aminotran_1_2 PF00155.21 BAD84449.1 - 9.3e-40 136.9 0.0 1.2e-39 136.5 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II Alliinase_C PF04864.13 BAD84449.1 - 0.0079 15.1 0.0 0.012 14.5 0.0 1.3 1 0 0 1 1 1 1 Allinase CM_2 PF01817.21 BAD84450.1 - 9e-10 38.8 0.2 1.1e-09 38.5 0.2 1.1 1 0 0 1 1 1 1 Chorismate mutase type II Chorismate_synt PF01264.21 BAD84451.1 - 4.8e-123 410.0 0.0 5.4e-123 409.9 0.0 1.0 1 0 0 1 1 1 1 Chorismate synthase EPSP_synthase PF00275.20 BAD84452.1 - 2.8e-102 342.5 0.0 3.2e-102 342.3 0.0 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) GHMP_kinases_N PF00288.26 BAD84453.1 - 5.2e-14 52.2 4.6 4.4e-13 49.3 1.3 2.9 3 0 0 3 3 3 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 BAD84453.1 - 0.0041 17.5 0.1 0.06 13.7 0.0 2.4 2 0 0 2 2 2 1 GHMP kinases C terminal Shikimate_dh_N PF08501.11 BAD84454.1 - 2.8e-30 104.4 0.0 4.6e-30 103.7 0.0 1.4 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain SDH_C PF18317.1 BAD84454.1 - 6.6e-13 48.2 0.5 1.5e-12 47.0 0.5 1.7 1 0 0 1 1 1 1 Shikimate 5'-dehydrogenase C-terminal domain Shikimate_DH PF01488.20 BAD84454.1 - 3e-10 40.3 0.0 4.3e-10 39.8 0.0 1.2 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Sacchrp_dh_NADP PF03435.18 BAD84454.1 - 8.9e-06 26.0 0.0 1.5e-05 25.3 0.0 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain TrkA_N PF02254.18 BAD84454.1 - 3.3e-05 24.1 0.0 4.8e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 TrkA-N domain ApbA PF02558.16 BAD84454.1 - 3.6e-05 23.5 0.0 5.6e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA F420_oxidored PF03807.17 BAD84454.1 - 0.00011 22.7 0.1 0.00019 22.0 0.1 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent DAO PF01266.24 BAD84454.1 - 0.00048 19.8 0.0 0.00063 19.4 0.0 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase 2-Hacid_dh_C PF02826.19 BAD84454.1 - 0.012 15.0 0.1 0.021 14.2 0.1 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FMO-like PF00743.19 BAD84454.1 - 0.015 13.8 0.0 0.029 12.8 0.0 1.4 2 0 0 2 2 2 0 Flavin-binding monooxygenase-like DUF1188 PF06690.11 BAD84454.1 - 0.016 14.7 0.0 0.024 14.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1188) NAD_binding_10 PF13460.6 BAD84454.1 - 0.017 15.0 0.0 0.061 13.2 0.0 1.8 1 1 1 2 2 2 0 NAD(P)H-binding AlaDh_PNT_C PF01262.21 BAD84454.1 - 0.024 14.0 0.0 0.039 13.3 0.0 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain PglD_N PF17836.1 BAD84454.1 - 0.026 15.2 0.0 0.059 14.0 0.0 1.6 1 0 0 1 1 1 0 PglD N-terminal domain NAD_binding_7 PF13241.6 BAD84454.1 - 0.03 14.7 0.0 0.048 14.1 0.0 1.3 1 0 0 1 1 1 0 Putative NAD(P)-binding GARS_N PF02844.15 BAD84454.1 - 0.036 14.8 0.0 0.062 14.1 0.0 1.4 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, N domain FAD_binding_2 PF00890.24 BAD84454.1 - 0.064 12.3 0.0 0.098 11.7 0.0 1.3 1 0 0 1 1 1 0 FAD binding domain NAD_binding_8 PF13450.6 BAD84454.1 - 0.083 13.1 0.0 0.23 11.7 0.0 1.8 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain adh_short PF00106.25 BAD84454.1 - 0.1 12.0 0.1 0.24 10.8 0.0 1.6 2 0 0 2 2 2 0 short chain dehydrogenase FAD_binding_3 PF01494.19 BAD84454.1 - 0.11 11.7 0.0 0.17 11.1 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain DHquinase_I PF01487.15 BAD84455.1 - 5.8e-48 164.1 0.0 6.9e-48 163.9 0.0 1.0 1 0 0 1 1 1 1 Type I 3-dehydroquinase Radical_SAM PF04055.21 BAD84455.1 - 0.017 15.5 0.0 0.054 13.9 0.0 1.7 2 0 0 2 2 2 0 Radical SAM superfamily HMGL-like PF00682.19 BAD84455.1 - 0.11 12.0 0.0 0.16 11.5 0.0 1.1 1 0 0 1 1 1 0 HMGL-like SIS PF01380.22 BAD84455.1 - 0.2 11.5 0.0 0.31 10.9 0.0 1.3 1 0 0 1 1 1 0 SIS domain NIF3 PF01784.18 BAD84455.1 - 0.25 11.0 0.0 0.38 10.4 0.0 1.2 1 0 0 1 1 1 0 NIF3 (NGG1p interacting factor 3) DHQ_synthase PF01761.20 BAD84456.1 - 1e-80 270.7 0.0 1.3e-80 270.3 0.0 1.1 1 0 0 1 1 1 1 3-dehydroquinate synthase Fe-ADH_2 PF13685.6 BAD84456.1 - 2.3e-06 27.5 0.0 4.6e-06 26.5 0.0 1.4 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 BAD84456.1 - 6.6e-05 21.9 0.0 0.00055 18.9 0.0 2.1 2 0 0 2 2 2 1 Iron-containing alcohol dehydrogenase DAHP_synth_1 PF00793.20 BAD84457.1 - 1.3e-79 266.9 0.0 1.7e-79 266.6 0.0 1.0 1 0 0 1 1 1 1 DAHP synthetase I family NeuB PF03102.14 BAD84457.1 - 6.2e-07 29.1 0.0 4.9e-06 26.2 0.0 1.9 2 0 0 2 2 2 1 NeuB family ComA PF02679.15 BAD84457.1 - 0.0062 16.0 0.0 0.076 12.5 0.0 2.0 1 1 0 2 2 2 1 (2R)-phospho-3-sulfolactate synthase (ComA) DUF1018 PF06252.12 BAD84457.1 - 0.1 13.6 0.0 0.61 11.1 0.0 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF1018) Transket_pyr PF02779.24 BAD84458.1 - 6.1e-37 127.0 0.2 2.4e-36 125.1 0.0 1.9 2 1 0 2 2 2 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 BAD84458.1 - 2.6e-32 111.3 0.2 4.7e-32 110.5 0.2 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain PFOR_II PF17147.4 BAD84458.1 - 9.3e-07 29.1 0.1 2.3e-06 27.8 0.1 1.7 2 0 0 2 2 2 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_N PF00456.21 BAD84459.1 - 2.5e-28 99.0 0.0 4.5e-28 98.2 0.0 1.3 1 1 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain E1_dh PF00676.20 BAD84459.1 - 2.4e-07 30.0 0.0 4e-07 29.3 0.0 1.3 1 0 0 1 1 1 1 Dehydrogenase E1 component TPP_enzyme_C PF02775.21 BAD84459.1 - 7.4e-07 29.1 0.1 3e-06 27.1 0.1 1.8 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.6 BAD84459.1 - 7.5e-07 28.6 0.0 8e-07 28.5 0.0 1.2 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase XFP_N PF09364.10 BAD84459.1 - 7.5e-05 21.7 0.0 9.2e-05 21.4 0.0 1.2 1 0 0 1 1 1 1 XFP N-terminal domain TIR_2 PF13676.6 BAD84459.1 - 0.044 14.4 0.0 0.16 12.6 0.0 1.9 2 1 0 2 2 2 0 TIR domain FAF PF11250.8 BAD84460.1 - 0.038 14.2 0.6 0.75 10.1 0.1 2.2 2 0 0 2 2 2 0 Fantastic Four meristem regulator CENP-N PF05238.13 BAD84460.1 - 0.097 12.0 0.1 0.11 11.8 0.1 1.1 1 0 0 1 1 1 0 Kinetochore protein CHL4 like F420_oxidored PF03807.17 BAD84461.1 - 2.8e-24 85.5 1.4 3.2e-24 85.3 1.4 1.0 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 BAD84461.1 - 4.9e-10 39.8 0.3 5.4e-10 39.7 0.3 1.0 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.16 BAD84461.1 - 2.8e-07 30.3 1.9 1.6e-06 27.9 1.9 1.8 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA UDPG_MGDP_dh_N PF03721.14 BAD84461.1 - 3.9e-07 29.8 0.4 2.9e-06 27.0 0.2 2.0 1 1 1 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain IlvN PF07991.12 BAD84461.1 - 9.3e-07 28.6 0.2 1e-06 28.4 0.2 1.0 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain NmrA PF05368.13 BAD84461.1 - 2.6e-06 27.2 0.9 2.9e-06 27.0 0.9 1.1 1 0 0 1 1 1 1 NmrA-like family Shikimate_DH PF01488.20 BAD84461.1 - 3.8e-06 27.0 0.3 4.3e-06 26.8 0.3 1.2 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NAD_Gly3P_dh_N PF01210.23 BAD84461.1 - 6.2e-06 26.3 3.0 0.0003 20.8 0.7 2.1 1 1 1 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.19 BAD84461.1 - 1.4e-05 24.6 0.1 1.6e-05 24.4 0.1 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Epimerase PF01370.21 BAD84461.1 - 1.9e-05 24.3 0.1 2.1e-05 24.1 0.1 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3HCDH_N PF02737.18 BAD84461.1 - 2.5e-05 24.3 2.5 7.2e-05 22.7 2.4 1.7 1 1 1 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PDH PF02153.17 BAD84461.1 - 4.4e-05 22.6 0.1 5.1e-05 22.4 0.1 1.0 1 0 0 1 1 1 1 Prephenate dehydrogenase Rossmann-like PF10727.9 BAD84461.1 - 5.2e-05 23.1 0.9 6.7e-05 22.8 0.9 1.2 1 0 0 1 1 1 1 Rossmann-like domain NAD_binding_10 PF13460.6 BAD84461.1 - 6.9e-05 22.8 0.2 8.3e-05 22.6 0.2 1.3 1 1 0 1 1 1 1 NAD(P)H-binding TrkA_N PF02254.18 BAD84461.1 - 7.7e-05 22.9 0.9 0.00015 22.0 0.3 1.6 1 1 1 2 2 2 1 TrkA-N domain Sacchrp_dh_NADP PF03435.18 BAD84461.1 - 0.00011 22.4 0.4 0.00017 21.9 0.4 1.4 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain adh_short PF00106.25 BAD84461.1 - 0.00057 19.4 1.7 0.0045 16.5 0.9 1.9 1 1 1 2 2 2 1 short chain dehydrogenase Pyr_redox PF00070.27 BAD84461.1 - 0.0017 18.9 1.3 0.0023 18.5 1.3 1.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase CoA_binding_2 PF13380.6 BAD84461.1 - 0.0039 17.7 0.3 0.0046 17.4 0.3 1.1 1 0 0 1 1 1 1 CoA binding domain DAO PF01266.24 BAD84461.1 - 0.0083 15.8 3.2 0.0097 15.5 2.8 1.3 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 BAD84461.1 - 0.0093 15.2 0.3 0.0093 15.2 0.3 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase adh_short_C2 PF13561.6 BAD84461.1 - 0.011 15.3 0.4 0.019 14.5 0.4 1.4 1 1 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase UPF0146 PF03686.13 BAD84461.1 - 0.014 15.3 0.2 0.016 15.1 0.2 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0146) ADH_zinc_N PF00107.26 BAD84461.1 - 0.015 15.3 0.5 0.018 15.0 0.5 1.2 1 0 0 1 1 1 0 Zinc-binding dehydrogenase NAD_binding_8 PF13450.6 BAD84461.1 - 0.027 14.7 0.6 0.042 14.1 0.6 1.3 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain RmlD_sub_bind PF04321.17 BAD84461.1 - 0.035 13.2 0.1 0.036 13.2 0.1 1.1 1 0 0 1 1 1 0 RmlD substrate binding domain DUF4235 PF14019.6 BAD84461.1 - 0.04 14.0 1.0 0.053 13.6 1.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4235) AlaDh_PNT_C PF01262.21 BAD84461.1 - 0.049 12.9 1.1 0.052 12.8 1.1 1.1 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Ldh_1_N PF00056.23 BAD84461.1 - 0.083 13.0 1.1 0.11 12.6 1.1 1.5 1 1 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 BAD84461.1 - 0.087 13.3 0.8 0.11 13.0 0.8 1.1 1 0 0 1 1 1 0 Putative NAD(P)-binding UDPG_MGDP_dh_C PF03720.15 BAD84461.1 - 0.12 12.8 0.0 0.15 12.5 0.0 1.1 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ThiF PF00899.21 BAD84461.1 - 0.43 9.9 2.0 0.6 9.4 1.9 1.3 1 1 0 1 1 1 0 ThiF family P5CR_dimer PF14748.6 BAD84462.1 - 1.1e-35 122.0 0.1 1.4e-35 121.6 0.1 1.2 1 0 0 1 1 1 1 Pyrroline-5-carboxylate reductase dimerisation Peptidase_M20 PF01546.28 BAD84463.1 - 6.1e-22 78.3 0.0 9.1e-22 77.8 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M42 PF05343.14 BAD84463.1 - 0.18 10.8 0.0 0.32 10.0 0.0 1.4 1 0 0 1 1 1 0 M42 glutamyl aminopeptidase Aminotran_3 PF00202.21 BAD84464.1 - 1.2e-96 323.9 0.0 1.8e-96 323.3 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-III AA_kinase PF00696.28 BAD84465.1 - 1.2e-24 87.3 1.4 1.4e-24 87.0 1.4 1.1 1 0 0 1 1 1 1 Amino acid kinase family Isochorismatase PF00857.20 BAD84465.1 - 0.01 16.0 0.1 3.7 7.7 0.1 2.4 1 1 1 2 2 2 0 Isochorismatase family DUF134 PF02001.16 BAD84465.1 - 0.017 15.7 0.8 0.029 14.9 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function DUF134 NTF-like PF14540.6 BAD84465.1 - 0.12 12.2 0.1 0.23 11.2 0.1 1.4 1 0 0 1 1 1 0 Nucleotidyltransferase-like Semialdhyde_dh PF01118.24 BAD84466.1 - 7.2e-29 100.7 0.0 1.2e-28 100.0 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 BAD84466.1 - 3.4e-06 27.3 0.0 5.2e-06 26.7 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain Epimerase PF01370.21 BAD84466.1 - 0.0021 17.6 0.0 0.0041 16.6 0.0 1.5 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family DapB_N PF01113.20 BAD84466.1 - 0.023 14.8 0.0 0.04 14.0 0.0 1.4 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Sacchrp_dh_NADP PF03435.18 BAD84466.1 - 0.047 13.9 0.0 0.082 13.2 0.0 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain GFO_IDH_MocA PF01408.22 BAD84466.1 - 0.067 14.0 0.1 0.2 12.5 0.0 1.8 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold RimK PF08443.11 BAD84467.1 - 3.3e-21 75.8 0.0 6e-21 74.9 0.0 1.4 2 0 0 2 2 2 1 RimK-like ATP-grasp domain ATP-grasp_3 PF02655.14 BAD84467.1 - 5.5e-05 23.3 0.0 0.0001 22.4 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp PF02222.22 BAD84467.1 - 0.0043 16.6 0.0 3.3 7.2 0.0 2.2 2 0 0 2 2 2 2 ATP-grasp domain DNA_ligase_ZBD PF03119.16 BAD84468.1 - 6.7e-06 26.0 6.1 0.01 15.9 0.6 2.2 2 0 0 2 2 2 2 NAD-dependent DNA ligase C4 zinc finger domain zf-ribbon_3 PF13248.6 BAD84468.1 - 1.4e-05 24.3 0.7 0.059 12.8 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zf-TFIIB PF13453.6 BAD84468.1 - 0.00012 21.4 0.6 0.0029 16.9 1.0 2.1 1 1 1 2 2 2 2 Transcription factor zinc-finger zinc_ribbon_2 PF13240.6 BAD84468.1 - 0.00014 21.5 0.3 0.0014 18.3 0.3 2.1 1 1 0 1 1 1 1 zinc-ribbon domain Ogr_Delta PF04606.12 BAD84468.1 - 0.00041 20.3 0.0 0.67 10.0 0.0 2.1 2 0 0 2 2 2 2 Ogr/Delta-like zinc finger Prok-RING_1 PF14446.6 BAD84468.1 - 0.00042 20.2 1.8 0.00055 19.8 1.8 1.2 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 Rad50_zn_hook PF04423.14 BAD84468.1 - 0.00053 19.8 2.7 0.21 11.5 0.2 2.3 1 1 1 2 2 2 2 Rad50 zinc hook motif YacG PF03884.14 BAD84468.1 - 0.0007 19.3 0.7 0.95 9.2 0.1 2.1 2 0 0 2 2 2 2 DNA gyrase inhibitor YacG Prim_Zn_Ribbon PF08273.12 BAD84468.1 - 0.00071 19.8 4.9 0.31 11.3 0.3 2.1 2 0 0 2 2 2 2 Zinc-binding domain of primase-helicase Lar_restr_allev PF14354.6 BAD84468.1 - 0.00094 19.5 1.2 0.0013 19.0 1.2 1.4 1 1 0 1 1 1 1 Restriction alleviation protein Lar zf-Di19 PF05605.12 BAD84468.1 - 0.002 18.4 0.6 0.98 9.8 0.0 2.1 1 1 1 2 2 2 1 Drought induced 19 protein (Di19), zinc-binding HypA PF01155.19 BAD84468.1 - 0.0023 18.0 0.2 0.0026 17.8 0.2 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-IS66 PF13005.7 BAD84468.1 - 0.0023 18.3 3.6 0.044 14.2 1.2 2.2 1 1 1 2 2 2 1 zinc-finger binding domain of transposase IS66 zf-C4_Topoisom PF01396.19 BAD84468.1 - 0.0039 16.9 1.9 1.2 9.0 0.1 2.1 2 0 0 2 2 2 2 Topoisomerase DNA binding C4 zinc finger RNA_POL_M_15KD PF02150.16 BAD84468.1 - 0.0041 16.9 0.3 0.0098 15.7 0.3 1.6 1 1 0 1 1 1 1 RNA polymerases M/15 Kd subunit Zn-ribbon_8 PF09723.10 BAD84468.1 - 0.0047 17.0 3.6 0.021 15.0 3.6 1.9 1 1 0 1 1 1 1 Zinc ribbon domain zf-NADH-PPase PF09297.11 BAD84468.1 - 0.0052 16.4 0.2 2.4 7.9 0.0 2.1 2 0 0 2 2 2 1 NADH pyrophosphatase zinc ribbon domain Cys_rich_CPXG PF14255.6 BAD84468.1 - 0.0073 16.2 3.8 0.33 10.9 3.9 2.2 1 1 0 1 1 1 1 Cysteine-rich CPXCG Zn_Tnp_IS1595 PF12760.7 BAD84468.1 - 0.0079 16.1 1.2 2.7 8.0 0.1 2.1 1 1 1 2 2 2 1 Transposase zinc-ribbon domain zinc-ribbons_6 PF07191.12 BAD84468.1 - 0.012 15.6 0.8 0.034 14.1 0.8 1.6 1 1 0 1 1 1 0 zinc-ribbons CpXC PF14353.6 BAD84468.1 - 0.013 15.6 0.4 1 9.4 0.1 2.0 2 0 0 2 2 2 0 CpXC protein zf-RRN7 PF11781.8 BAD84468.1 - 0.014 15.1 2.4 2.8 7.7 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Elf1 PF05129.13 BAD84468.1 - 0.015 15.3 0.1 0.019 15.0 0.1 1.2 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like zf-HYPF PF07503.12 BAD84468.1 - 0.015 15.0 0.2 1.6 8.6 0.0 2.1 2 0 0 2 2 2 0 HypF finger DUF4428 PF14471.6 BAD84468.1 - 0.015 15.2 0.3 5.4 7.0 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4428) zf_UBZ PF18439.1 BAD84468.1 - 0.016 14.8 1.2 0.74 9.5 0.2 2.4 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-piccolo PF05715.13 BAD84468.1 - 0.016 15.3 0.6 1.3 9.2 0.1 2.1 2 0 0 2 2 2 0 Piccolo Zn-finger DUF2089 PF09862.9 BAD84468.1 - 0.022 14.8 1.2 4.5 7.4 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2089) TF_Zn_Ribbon PF08271.12 BAD84468.1 - 0.022 14.3 4.5 0.56 9.8 4.5 2.2 1 1 0 1 1 1 0 TFIIB zinc-binding zf-C3HC4_3 PF13920.6 BAD84468.1 - 0.027 14.3 0.7 4.9 7.1 0.1 2.1 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zf-CHCC PF10276.9 BAD84468.1 - 0.027 14.5 0.4 2 8.5 0.0 2.1 2 0 0 2 2 2 0 Zinc-finger domain YhfH PF14149.6 BAD84468.1 - 0.032 14.2 2.5 1.9 8.6 0.4 2.2 2 0 0 2 2 2 0 YhfH-like protein OrfB_Zn_ribbon PF07282.11 BAD84468.1 - 0.033 14.1 0.5 0.081 12.9 0.6 1.6 1 1 1 2 2 2 0 Putative transposase DNA-binding domain ADD_ATRX PF17981.1 BAD84468.1 - 0.037 13.9 0.3 0.4 10.6 0.0 2.0 1 1 1 2 2 2 0 Cysteine Rich ADD domain Desulfoferrod_N PF06397.12 BAD84468.1 - 0.043 13.4 4.2 1.1 8.9 0.5 2.1 1 1 1 2 2 2 0 Desulfoferrodoxin, N-terminal domain Cys_rich_KTR PF14205.6 BAD84468.1 - 0.044 13.6 0.4 5.9 6.8 0.0 2.2 2 0 0 2 2 2 0 Cysteine-rich KTR DZR PF12773.7 BAD84468.1 - 0.044 13.8 0.4 0.11 12.6 0.4 1.6 1 1 0 1 1 1 0 Double zinc ribbon Prok-RING_4 PF14447.6 BAD84468.1 - 0.044 13.6 1.1 6.8 6.6 0.1 2.1 1 1 1 2 2 2 0 Prokaryotic RING finger family 4 Nudix_N_2 PF14803.6 BAD84468.1 - 0.046 13.6 1.1 7.2 6.6 0.1 2.2 2 0 0 2 2 2 0 Nudix N-terminal PhnA_Zn_Ribbon PF08274.12 BAD84468.1 - 0.048 13.6 2.2 1.7 8.7 0.3 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zf-WRNIP1_ubi PF18279.1 BAD84468.1 - 0.049 14.3 4.5 2.7 8.8 0.5 2.2 2 0 0 2 2 2 0 Werner helicase-interacting protein 1 ubiquitin-binding domain Tmemb_55A PF09788.9 BAD84468.1 - 0.052 12.6 0.7 0.054 12.6 0.7 1.1 1 0 0 1 1 1 0 Transmembrane protein 55A Sgf11 PF08209.11 BAD84468.1 - 0.057 13.0 0.6 8.3 6.1 0.1 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zinc_ribbon_5 PF13719.6 BAD84468.1 - 0.061 13.1 0.1 6 6.7 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Cys_rich_CPCC PF14206.6 BAD84468.1 - 0.072 12.9 0.2 0.085 12.7 0.2 1.2 1 0 0 1 1 1 0 Cysteine-rich CPCC zf-CSL PF05207.13 BAD84468.1 - 0.072 12.8 1.2 0.12 12.1 1.2 1.5 1 0 0 1 1 1 0 CSL zinc finger Ribosomal_L32p PF01783.23 BAD84468.1 - 0.091 13.0 2.3 2.1 8.7 0.1 2.1 1 1 1 2 2 2 0 Ribosomal L32p protein family zf_CopZ PF18423.1 BAD84468.1 - 0.095 12.7 3.4 1.6 8.7 0.1 2.1 1 1 1 2 2 2 0 Zinc binding domain zf-H2C2_2 PF13465.6 BAD84468.1 - 0.098 13.1 0.9 13 6.4 0.1 2.1 2 0 0 2 2 2 0 Zinc-finger double domain zinc_ribbon_4 PF13717.6 BAD84468.1 - 0.1 12.5 1.6 3.7 7.5 2.0 2.1 1 1 1 2 2 2 0 zinc-ribbon domain Trm112p PF03966.16 BAD84468.1 - 0.1 13.2 0.2 0.41 11.3 0.0 1.8 2 0 0 2 2 2 0 Trm112p-like protein zf-C2H2_9 PF16293.5 BAD84468.1 - 0.12 12.2 2.1 7.7 6.4 0.2 2.4 1 1 1 2 2 2 0 C2H2 type zinc-finger (1 copy) DUF2225 PF09986.9 BAD84468.1 - 0.13 12.0 1.8 3.1 7.5 0.1 2.0 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2225) DUF3797 PF12677.7 BAD84468.1 - 0.13 12.2 4.1 2.6 8.0 0.2 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) TerY_C PF15616.6 BAD84468.1 - 0.15 12.2 1.3 2.4 8.3 0.0 2.0 1 1 0 1 1 1 0 TerY-C metal binding domain zf-tcix PF14952.6 BAD84468.1 - 0.17 11.5 0.5 5.7 6.6 0.0 2.1 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zf-Mss51 PF13824.6 BAD84468.1 - 0.38 10.9 3.5 0.53 10.4 2.3 1.9 2 1 0 2 2 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Rubredoxin PF00301.20 BAD84468.1 - 0.58 10.2 3.2 8.4 6.5 0.1 2.4 3 0 0 3 3 2 0 Rubredoxin Zn-C2H2_12 PF18112.1 BAD84468.1 - 0.66 10.5 6.3 9.9 6.7 0.5 2.3 2 0 0 2 2 2 0 Autophagy receptor zinc finger-C2H2 domain DUF1178 PF06676.11 BAD84468.1 - 0.7 10.3 4.7 7.8 6.9 0.3 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1178) zf-C2H2_6 PF13912.6 BAD84468.1 - 0.96 9.5 2.8 7.5 6.7 0.1 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger zf-C2HC_2 PF13913.6 BAD84468.1 - 1.1 9.2 5.4 6.1 6.9 0.4 2.2 2 0 0 2 2 2 0 zinc-finger of a C2HC-type DUF2116 PF09889.9 BAD84468.1 - 1.3 9.0 5.0 3.6 7.7 0.7 2.1 1 1 1 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) TRAF6_Z2 PF18048.1 BAD84468.1 - 2.4 8.3 5.5 17 5.6 0.6 2.1 2 0 0 2 2 2 0 TNF receptor-associated factor 6 zinc finger 2 RNF220 PF15926.5 BAD84468.1 - 3.6 7.1 4.5 3.8 7.1 1.3 1.9 1 1 1 2 2 2 0 E3 ubiquitin-protein ligase RNF220 Iso_dh PF00180.20 BAD84469.1 - 2.2e-84 283.6 0.0 4.1e-84 282.7 0.0 1.3 1 1 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Aconitase_C PF00694.19 BAD84470.1 - 2.2e-18 66.9 0.0 2.9e-18 66.4 0.0 1.1 1 0 0 1 1 1 1 Aconitase C-terminal domain Aconitase_2_N PF06434.13 BAD84470.1 - 0.0045 16.6 0.1 0.23 11.1 0.1 2.2 1 1 0 1 1 1 1 Aconitate hydratase 2 N-terminus Aconitase PF00330.20 BAD84471.1 - 2.2e-66 224.7 5.2 9.1e-34 117.2 0.2 3.4 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) Flg_bbr_C PF06429.13 BAD84471.1 - 0.012 15.8 0.0 0.025 14.7 0.0 1.5 1 0 0 1 1 1 0 Flagellar basal body rod FlgEFG protein C-terminal DUF521 PF04412.13 BAD84471.1 - 0.11 11.2 0.0 0.16 10.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF521) HMGL-like PF00682.19 BAD84472.1 - 1.9e-59 201.4 0.0 2.3e-59 201.1 0.0 1.1 1 0 0 1 1 1 1 HMGL-like Nitroreductase PF00881.24 BAD84473.1 - 7.6e-30 104.2 0.0 9.4e-30 103.9 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 BAD84473.1 - 4.2e-13 49.4 0.0 1.2e-06 28.2 0.3 2.4 1 1 1 2 2 2 2 Putative TM nitroreductase ATPase_2 PF01637.18 BAD84474.1 - 3.9e-07 30.2 0.1 4.1e-07 30.1 0.1 1.0 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_16 PF13191.6 BAD84474.1 - 0.045 14.1 0.0 0.047 14.1 0.0 1.0 1 0 0 1 1 1 0 AAA ATPase domain DUF234 PF03008.14 BAD84475.1 - 1.4e-30 105.7 2.2 2.5e-30 104.8 2.2 1.4 1 0 0 1 1 1 1 Archaea bacterial proteins of unknown function ATPase_2 PF01637.18 BAD84475.1 - 0.00013 22.0 0.0 0.00031 20.7 0.0 1.6 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea UPF0102 PF02021.17 BAD84475.1 - 0.0068 16.6 0.1 0.017 15.3 0.1 1.7 1 0 0 1 1 1 1 Uncharacterised protein family UPF0102 HTH_45 PF14947.6 BAD84475.1 - 0.04 13.9 0.0 0.093 12.7 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix HxlR PF01638.17 BAD84475.1 - 0.063 13.1 0.0 0.13 12.1 0.0 1.5 1 0 0 1 1 1 0 HxlR-like helix-turn-helix Lactamase_B_2 PF12706.7 BAD84477.1 - 5.7e-18 65.2 0.0 7.1e-18 64.9 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 BAD84477.1 - 1e-05 25.6 2.6 2.4e-05 24.4 1.8 2.0 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily PFL-like PF02901.15 BAD84478.1 - 2.1e-222 740.3 0.0 2.7e-222 740.0 0.0 1.1 1 0 0 1 1 1 1 Pyruvate formate lyase-like Gly_radical PF01228.21 BAD84478.1 - 5.9e-30 103.9 0.0 3e-29 101.7 0.0 2.1 2 0 0 2 2 2 1 Glycine radical TelA PF05816.11 BAD84478.1 - 0.12 11.4 1.7 0.23 10.5 1.7 1.3 1 0 0 1 1 1 0 Toxic anion resistance protein (TelA) Radical_SAM PF04055.21 BAD84479.1 - 5.7e-24 85.4 5.8 1.1e-23 84.5 3.3 2.4 2 1 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 BAD84479.1 - 5.2e-14 52.7 0.9 5.5e-13 49.4 0.8 2.7 1 1 1 2 2 2 1 4Fe-4S single cluster domain Fer4 PF00037.27 BAD84479.1 - 2.5e-13 49.2 10.0 1.2e-06 28.0 2.2 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 BAD84479.1 - 1.3e-08 35.3 11.5 1.3e-08 35.3 11.5 1.8 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 BAD84479.1 - 1.8e-08 34.0 11.4 0.00058 19.8 1.3 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 BAD84479.1 - 3.4e-08 34.3 8.1 0.0016 19.4 1.7 2.5 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 BAD84479.1 - 4.3e-08 33.2 10.0 8.9e-08 32.1 10.0 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 BAD84479.1 - 9.2e-08 31.8 11.6 0.00013 21.9 2.7 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 BAD84479.1 - 1.3e-07 31.6 21.3 1.4e-06 28.4 11.4 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 BAD84479.1 - 2.3e-06 27.6 12.0 2.3e-06 27.6 12.0 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_14 PF13394.6 BAD84479.1 - 0.00014 22.0 4.0 0.0047 17.0 0.2 2.5 1 1 0 2 2 2 1 4Fe-4S single cluster domain Fer4_13 PF13370.6 BAD84479.1 - 0.0019 18.7 11.5 0.18 12.4 1.1 2.6 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_4 PF12800.7 BAD84479.1 - 0.0032 17.9 1.7 0.0032 17.9 1.7 2.6 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_15 PF13459.6 BAD84479.1 - 0.015 16.0 7.1 0.03 15.0 0.7 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_3 PF12798.7 BAD84479.1 - 0.035 15.0 5.9 0.035 15.0 5.9 2.6 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_17 PF13534.6 BAD84479.1 - 0.057 14.0 11.6 14 6.3 2.0 2.5 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 BAD84479.1 - 0.077 13.5 14.0 4.7 7.7 2.2 2.5 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 BAD84479.1 - 1.2 9.3 14.1 96 3.2 14.3 2.3 1 1 0 1 1 1 0 4Fe-4S dicluster domain DUF4125 PF13526.6 BAD84480.1 - 1.4e-45 155.4 2.2 2.2e-45 154.7 2.2 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF4125) Mut7-C PF01927.16 BAD84481.1 - 1.3e-44 151.8 0.0 1.6e-44 151.5 0.0 1.0 1 0 0 1 1 1 1 Mut7-C RNAse domain DUF5615 PF18480.1 BAD84481.1 - 2.4e-05 24.0 0.1 6.7e-05 22.6 0.1 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF5615) TF_Zn_Ribbon PF08271.12 BAD84481.1 - 0.0086 15.6 0.5 2.2 7.9 0.1 2.7 2 0 0 2 2 2 1 TFIIB zinc-binding DUF35_N PF12172.8 BAD84481.1 - 0.016 15.1 4.2 1.7 8.6 0.4 2.7 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf_CopZ PF18423.1 BAD84481.1 - 0.019 14.9 0.6 0.029 14.3 0.6 1.3 1 0 0 1 1 1 0 Zinc binding domain Rubredoxin PF00301.20 BAD84481.1 - 0.022 14.8 0.7 6 7.0 0.0 2.3 2 0 0 2 2 2 0 Rubredoxin zf-IS66 PF13005.7 BAD84481.1 - 0.022 15.1 2.0 2.5 8.6 2.9 2.6 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 Zn-ribbon_8 PF09723.10 BAD84481.1 - 0.025 14.7 1.0 5.6 7.2 0.0 2.3 2 0 0 2 2 2 0 Zinc ribbon domain PIN_9 PF18477.1 BAD84481.1 - 0.041 14.2 0.0 0.074 13.4 0.0 1.4 1 0 0 1 1 1 0 PIN like domain ADK_lid PF05191.14 BAD84481.1 - 0.049 13.6 1.2 2.3 8.3 0.5 2.3 2 0 0 2 2 2 0 Adenylate kinase, active site lid PIN_10 PF18478.1 BAD84481.1 - 0.096 12.9 0.2 0.91 9.8 0.2 2.2 1 1 0 1 1 1 0 PIN like domain GPAT_N PF14829.6 BAD84481.1 - 0.17 11.9 0.0 0.5 10.4 0.0 1.7 2 0 0 2 2 2 0 Glycerol-3-phosphate acyltransferase N-terminal zf-ribbon_3 PF13248.6 BAD84481.1 - 0.79 9.2 3.6 10 5.7 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain TFIIS_C PF01096.18 BAD84481.1 - 0.9 9.4 4.6 2.1 8.3 0.6 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-ACC PF17848.1 BAD84481.1 - 1.1 9.4 6.2 18 5.5 0.1 3.0 3 0 0 3 3 3 0 Acetyl-coA carboxylase zinc finger domain zf-RRN7 PF11781.8 BAD84481.1 - 2.6 7.8 5.8 3.5 7.4 1.5 2.2 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 MAF_flag10 PF01973.18 BAD84482.1 - 9.1e-29 100.3 0.0 1.2e-28 99.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF115 TPK_catalytic PF04263.16 BAD84482.1 - 0.054 13.5 0.1 0.096 12.7 0.1 1.4 1 0 0 1 1 1 0 Thiamin pyrophosphokinase, catalytic domain DUF1514 PF07438.11 BAD84483.1 - 0.032 14.1 3.6 0.12 12.3 0.2 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1514) SNF PF00209.18 BAD84484.1 - 3.8e-05 22.6 9.4 3.8e-05 22.6 9.4 2.1 1 1 1 2 2 2 2 Sodium:neurotransmitter symporter family NadA PF02445.16 BAD84485.1 - 1.1e-111 372.8 2.4 1.2e-111 372.6 2.4 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein Sua5_yciO_yrdC PF01300.18 BAD84485.1 - 0.002 17.7 0.2 0.0068 15.9 0.1 1.9 2 0 0 2 2 2 1 Telomere recombination XPG_I PF00867.18 BAD84485.1 - 0.13 12.7 0.0 0.73 10.2 0.0 2.1 2 0 0 2 2 2 0 XPG I-region DUF4535 PF15054.6 BAD84485.1 - 0.16 11.8 0.2 35 4.2 0.0 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF4535) FAD_binding_2 PF00890.24 BAD84486.1 - 9.4e-66 222.6 0.6 1.1e-65 222.4 0.6 1.1 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 BAD84486.1 - 3e-14 53.0 0.4 8.9e-09 35.0 0.3 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Succ_DH_flav_C PF02910.20 BAD84486.1 - 1.4e-11 44.4 0.6 7.9e-06 25.9 0.3 2.5 1 1 1 2 2 2 2 Fumarate reductase flavoprotein C-term DAO PF01266.24 BAD84486.1 - 4.4e-09 36.4 3.8 0.00019 21.2 2.1 2.4 2 0 0 2 2 2 2 FAD dependent oxidoreductase GIDA PF01134.22 BAD84486.1 - 3.8e-07 29.5 3.2 1.5e-06 27.5 3.2 1.8 1 1 0 1 1 1 1 Glucose inhibited division protein A HI0933_like PF03486.14 BAD84486.1 - 1.4e-05 24.0 1.9 0.00021 20.1 1.9 2.2 1 1 0 1 1 1 1 HI0933-like protein NAD_binding_8 PF13450.6 BAD84486.1 - 1.4e-05 25.2 0.6 4.1e-05 23.7 0.6 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 BAD84486.1 - 7.7e-05 23.2 1.5 0.00017 22.1 0.4 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 BAD84486.1 - 0.0014 18.0 1.2 0.0023 17.2 1.2 1.3 1 0 0 1 1 1 1 FAD binding domain AlaDh_PNT_C PF01262.21 BAD84486.1 - 0.0029 17.0 0.2 0.0043 16.4 0.2 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain FAD_oxidored PF12831.7 BAD84486.1 - 0.02 14.3 1.9 0.036 13.4 1.9 1.4 1 0 0 1 1 1 0 FAD dependent oxidoreductase Trp_halogenase PF04820.14 BAD84486.1 - 0.032 13.1 2.3 0.11 11.3 1.8 1.9 2 0 0 2 2 2 0 Tryptophan halogenase Lycopene_cycl PF05834.12 BAD84486.1 - 0.081 12.0 0.2 0.19 10.7 0.3 1.5 2 0 0 2 2 2 0 Lycopene cyclase protein NYD-SP12_N PF15015.6 BAD84486.1 - 0.1 10.9 0.0 0.15 10.4 0.0 1.1 1 0 0 1 1 1 0 Spermatogenesis-associated, N-terminal Pyr_redox_3 PF13738.6 BAD84486.1 - 0.11 11.8 0.8 0.19 11.0 0.8 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 BAD84486.1 - 0.15 12.1 0.7 26 4.8 0.0 2.3 2 0 0 2 2 2 0 FAD-NAD(P)-binding ApbA PF02558.16 BAD84486.1 - 0.18 11.5 0.5 0.32 10.6 0.5 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.18 BAD84486.1 - 0.21 11.5 0.3 0.34 10.8 0.3 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Thi4 PF01946.17 BAD84486.1 - 0.22 10.7 1.3 0.75 9.0 0.4 2.3 3 0 0 3 3 3 0 Thi4 family OrfB_IS605 PF01385.19 BAD84487.1 - 4.5e-29 101.1 0.3 1e-28 99.9 0.0 1.7 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.11 BAD84487.1 - 9.5e-22 76.7 0.0 1.7e-21 75.9 0.0 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.8 BAD84487.1 - 0.00059 19.3 0.0 0.0016 17.9 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain RuvX PF03652.15 BAD84487.1 - 0.0072 16.7 0.0 0.023 15.1 0.0 1.8 1 1 0 1 1 1 1 Holliday junction resolvase MAP65_ASE1 PF03999.12 BAD84487.1 - 0.017 13.9 0.4 0.024 13.3 0.4 1.1 1 0 0 1 1 1 0 Microtubule associated protein (MAP65/ASE1 family) Helveticin_J PF17312.2 BAD84487.1 - 0.066 12.3 0.1 0.092 11.8 0.1 1.2 1 0 0 1 1 1 0 Bacteriocin helveticin-J PTS_2-RNA PF01885.16 BAD84491.1 - 1.8e-33 116.1 0.0 2.1e-33 115.9 0.0 1.0 1 0 0 1 1 1 1 RNA 2'-phosphotransferase, Tpt1 / KptA family PARP PF00644.20 BAD84491.1 - 0.0022 17.6 0.0 0.0028 17.3 0.0 1.2 1 0 0 1 1 1 1 Poly(ADP-ribose) polymerase catalytic domain DarT PF14487.6 BAD84491.1 - 0.11 12.4 0.0 0.82 9.5 0.0 2.0 1 1 1 2 2 2 0 ssDNA thymidine ADP-ribosyltransferase, DarT Exo_endo_phos PF03372.23 BAD84492.1 - 3e-06 26.9 0.0 4.9e-06 26.2 0.0 1.4 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Pyr_redox_2 PF07992.14 BAD84493.1 - 4.8e-69 232.8 3.1 6.1e-69 232.5 3.1 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 BAD84493.1 - 1.9e-24 86.0 2.9 6.4e-17 61.9 0.6 3.7 3 0 0 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 BAD84493.1 - 4.2e-17 62.4 0.2 4.2e-16 59.2 0.0 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DAO PF01266.24 BAD84493.1 - 1.6e-07 31.2 2.7 0.28 10.7 0.1 4.1 4 0 0 4 4 4 2 FAD dependent oxidoreductase HI0933_like PF03486.14 BAD84493.1 - 1.4e-06 27.3 2.9 0.35 9.5 1.0 4.0 3 1 1 4 4 4 3 HI0933-like protein NAD_binding_8 PF13450.6 BAD84493.1 - 7.8e-06 26.0 0.1 0.23 11.7 0.0 2.7 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.6 BAD84493.1 - 1e-05 25.0 3.6 0.00011 21.6 2.7 2.8 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 BAD84493.1 - 0.00011 21.4 0.1 0.015 14.4 0.1 2.6 3 0 0 3 3 3 1 Glucose inhibited division protein A AlaDh_PNT_C PF01262.21 BAD84493.1 - 0.00012 21.5 0.2 0.011 15.0 0.2 2.5 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_2 PF00890.24 BAD84493.1 - 0.00021 20.5 2.8 0.23 10.5 0.8 3.2 3 0 0 3 3 3 2 FAD binding domain NAD_binding_7 PF13241.6 BAD84493.1 - 0.00022 21.6 0.6 0.062 13.7 0.1 2.7 2 1 0 2 2 2 1 Putative NAD(P)-binding 3HCDH_N PF02737.18 BAD84493.1 - 0.00026 20.9 0.8 0.0073 16.2 0.2 2.5 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Lycopene_cycl PF05834.12 BAD84493.1 - 0.00034 19.8 2.1 0.63 9.0 0.0 3.1 2 1 1 3 3 3 2 Lycopene cyclase protein DUF1188 PF06690.11 BAD84493.1 - 0.0024 17.4 0.1 0.046 13.3 0.0 2.3 2 1 0 2 2 2 1 Protein of unknown function (DUF1188) K_oxygenase PF13434.6 BAD84493.1 - 0.0044 16.2 0.0 0.2 10.7 0.0 2.3 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) UDPG_MGDP_dh_N PF03721.14 BAD84493.1 - 0.006 16.2 0.1 0.058 13.0 0.0 2.3 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 2-Hacid_dh_C PF02826.19 BAD84493.1 - 0.0062 15.9 0.2 0.025 13.9 0.0 1.9 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FAD_binding_3 PF01494.19 BAD84493.1 - 0.031 13.5 0.2 0.46 9.7 0.1 2.2 2 0 0 2 2 2 0 FAD binding domain TrkA_N PF02254.18 BAD84493.1 - 0.041 14.1 0.2 6.3 7.1 0.0 2.8 3 0 0 3 3 3 0 TrkA-N domain Glu_dehyd_C PF16912.5 BAD84493.1 - 0.043 13.3 0.4 0.19 11.2 0.2 2.2 1 1 1 2 2 2 0 Glucose dehydrogenase C-terminus ThiF PF00899.21 BAD84493.1 - 0.049 13.0 0.1 1.5 8.1 0.0 2.2 2 0 0 2 2 2 0 ThiF family Trp_halogenase PF04820.14 BAD84493.1 - 0.057 12.3 0.9 0.096 11.5 0.0 1.8 2 0 0 2 2 2 0 Tryptophan halogenase GFO_IDH_MocA PF01408.22 BAD84493.1 - 0.058 14.2 0.1 9.2 7.1 0.0 2.6 2 1 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold AA_kinase PF00696.28 BAD84494.1 - 2.5e-35 122.2 1.7 7.6e-35 120.6 1.7 1.7 1 1 0 1 1 1 1 Amino acid kinase family Imm40 PF15569.6 BAD84494.1 - 0.12 12.5 0.0 0.48 10.6 0.0 2.0 3 0 0 3 3 3 0 Immunity protein 40 DEAD PF00270.29 BAD84495.1 - 2.9e-49 167.2 0.0 5e-49 166.4 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 BAD84495.1 - 5.3e-31 107.2 0.0 2.8e-30 104.9 0.0 2.2 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 BAD84495.1 - 5.1e-06 26.6 0.0 1.3e-05 25.2 0.0 1.7 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit ERCC3_RAD25_C PF16203.5 BAD84495.1 - 0.0066 15.7 0.0 0.011 15.0 0.0 1.2 1 0 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase CMS1 PF14617.6 BAD84495.1 - 0.16 11.3 0.0 0.33 10.3 0.0 1.4 1 0 0 1 1 1 0 U3-containing 90S pre-ribosomal complex subunit Ribosomal_S10 PF00338.22 BAD84496.1 - 1.1e-27 96.2 0.1 1.2e-27 96.0 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e PriA_C PF18074.1 BAD84496.1 - 0.0089 16.8 0.2 0.015 16.1 0.1 1.4 2 0 0 2 2 2 1 Primosomal protein N C-terminal domain GTP_EFTU PF00009.27 BAD84497.1 - 3e-60 203.1 0.1 4.3e-60 202.6 0.1 1.1 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.17 BAD84497.1 - 4.2e-38 130.1 0.4 1.2e-37 128.7 0.4 1.8 1 0 0 1 1 1 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.25 BAD84497.1 - 1.2e-19 70.4 1.4 3.6e-18 65.7 0.5 2.8 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 BAD84497.1 - 6.1e-06 26.3 0.1 2.8e-05 24.2 0.1 2.1 1 1 0 1 1 1 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 BAD84497.1 - 0.0036 17.2 0.9 0.071 13.0 0.3 2.4 1 1 1 2 2 2 1 RsgA GTPase FeoB_N PF02421.18 BAD84497.1 - 0.0083 15.7 0.9 0.053 13.0 0.2 2.5 2 1 0 2 2 2 1 Ferrous iron transport protein B GTP_EFTU_D4 PF14578.6 BAD84497.1 - 0.033 14.1 0.3 0.094 12.6 0.3 1.8 1 0 0 1 1 1 0 Elongation factor Tu domain 4 Dynamin_N PF00350.23 BAD84497.1 - 0.046 13.8 0.2 8.9 6.3 0.0 2.9 2 1 1 3 3 3 0 Dynamin family Gtr1_RagA PF04670.12 BAD84497.1 - 0.046 13.1 0.1 0.97 8.7 0.1 2.2 1 1 0 1 1 1 0 Gtr1/RagA G protein conserved region SRPRB PF09439.10 BAD84497.1 - 0.12 11.8 0.4 2 7.8 0.4 2.6 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit AIG1 PF04548.16 BAD84497.1 - 0.16 11.3 1.0 9.3 5.5 0.0 2.8 1 1 1 2 2 2 0 AIG1 family GTP_EFTU PF00009.27 BAD84498.1 - 1.4e-65 220.5 0.1 2.1e-65 219.9 0.1 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 BAD84498.1 - 1.1e-27 96.1 0.1 8.5e-27 93.3 0.0 2.4 2 0 0 2 2 2 1 Elongation factor G, domain IV EFG_II PF14492.6 BAD84498.1 - 2.1e-27 95.0 0.3 4.3e-27 94.0 0.3 1.6 1 0 0 1 1 1 1 Elongation Factor G, domain II EFG_C PF00679.24 BAD84498.1 - 9.3e-25 86.5 0.1 4.1e-24 84.4 0.0 2.3 2 0 0 2 2 2 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.25 BAD84498.1 - 1e-15 57.9 0.5 2.4e-15 56.7 0.5 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 2 RF3_C PF16658.5 BAD84498.1 - 4.7e-06 26.5 0.0 1.1e-05 25.2 0.0 1.6 1 0 0 1 1 1 1 Class II release factor RF3, C-terminal domain MMR_HSR1 PF01926.23 BAD84498.1 - 0.0018 18.4 0.0 0.0043 17.1 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase DUF2283 PF10049.9 BAD84498.1 - 0.11 12.7 0.0 0.41 10.9 0.0 2.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2283) DXP_synthase_N PF13292.6 BAD84498.1 - 0.15 11.3 0.1 0.32 10.1 0.1 1.5 1 0 0 1 1 1 0 1-deoxy-D-xylulose-5-phosphate synthase DUF4315 PF14193.6 BAD84500.1 - 0.0086 16.1 4.2 0.32 11.0 4.2 2.2 1 1 0 1 1 1 1 Domain of unknown function (DUF4315) CHD5 PF04420.14 BAD84500.1 - 0.041 13.7 0.8 0.041 13.8 0.8 1.2 1 0 0 1 1 1 0 CHD5-like protein HD PF01966.22 BAD84501.1 - 1.6e-08 34.8 2.8 1.6e-08 34.8 2.8 2.7 2 2 0 2 2 2 1 HD domain HDOD PF08668.12 BAD84501.1 - 0.0086 15.6 0.0 0.016 14.7 0.0 1.4 1 0 0 1 1 1 1 HDOD domain Peptidase_M20 PF01546.28 BAD84502.1 - 2.8e-25 89.2 0.1 4.1e-25 88.7 0.1 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M42 PF05343.14 BAD84502.1 - 1.3e-09 37.6 0.0 2.4e-05 23.5 0.0 2.1 2 0 0 2 2 2 2 M42 glutamyl aminopeptidase M20_dimer PF07687.14 BAD84502.1 - 5.3e-09 36.0 0.0 1.2e-08 34.8 0.0 1.6 1 1 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 BAD84502.1 - 5.2e-07 29.6 0.0 5e-06 26.3 0.0 2.0 2 0 0 2 2 2 1 Peptidase family M28 Lactamase_B PF00753.27 BAD84503.1 - 1.9e-24 86.8 4.7 2.6e-24 86.3 4.7 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 BAD84503.1 - 1.2e-06 28.2 0.1 1.6e-06 27.8 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain AbiEi_3_N PF17194.4 BAD84503.1 - 0.01 15.9 0.1 0.037 14.0 0.1 1.9 1 1 0 1 1 1 0 Transcriptional regulator, AbiEi antitoxin N-terminal domain FAD_oxidored PF12831.7 BAD84503.1 - 0.19 11.0 0.0 0.24 10.7 0.0 1.1 1 0 0 1 1 1 0 FAD dependent oxidoreductase MJ1316 PF04457.12 BAD84504.1 - 1.1e-12 48.5 0.1 1.2e-12 48.4 0.1 1.0 1 0 0 1 1 1 1 MJ1316 RNA cyclic group end recognition domain DUF835 PF05763.12 BAD84505.1 - 1.7e-35 121.7 0.0 3.7e-35 120.6 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF835) Rubrerythrin PF02915.17 BAD84505.1 - 2e-20 73.6 8.0 3.2e-20 72.9 8.0 1.4 1 0 0 1 1 1 1 Rubrerythrin Ferritin_2 PF13668.6 BAD84505.1 - 0.00011 22.4 0.1 0.0002 21.6 0.1 1.4 1 0 0 1 1 1 1 Ferritin-like domain DUF2383 PF09537.10 BAD84505.1 - 0.082 13.3 1.4 0.7 10.3 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF2383) MutS_II PF05188.17 BAD84505.1 - 0.1 12.9 0.2 0.21 11.9 0.2 1.4 1 0 0 1 1 1 0 MutS domain II Coat_F PF07875.12 BAD84505.1 - 0.19 12.0 0.3 7.9 6.8 0.0 3.3 4 0 0 4 4 4 0 Coat F domain TatD_DNase PF01026.21 BAD84506.1 - 1.5e-57 194.9 0.1 1.7e-57 194.7 0.1 1.0 1 0 0 1 1 1 1 TatD related DNase Amidohydro_1 PF01979.20 BAD84506.1 - 0.00021 20.7 0.8 0.001 18.5 0.8 1.9 1 1 0 1 1 1 1 Amidohydrolase family DUF4460 PF14687.6 BAD84506.1 - 0.073 13.1 0.0 0.32 11.1 0.0 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4460) DUF3216 PF11505.8 BAD84507.1 - 1.7e-49 166.0 4.0 1.9e-49 165.8 4.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3216) DUF4315 PF14193.6 BAD84507.1 - 0.21 11.6 2.6 0.35 10.9 0.7 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4315) Pterin_bind PF00809.22 BAD84508.1 - 4.8e-05 23.2 0.0 9.4e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 Pterin binding enzyme DUF4346 PF14251.6 BAD84508.1 - 0.00028 20.9 0.2 0.00095 19.2 0.1 1.9 2 1 0 2 2 2 1 Domain of unknown function (DUF4346) DUF72 PF01904.18 BAD84509.1 - 5e-39 134.7 0.2 6.1e-39 134.4 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 ABC2_membrane_5 PF13346.6 BAD84513.1 - 0.0005 19.7 13.9 0.0005 19.7 13.9 2.0 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 BAD84513.1 - 0.0041 17.1 12.0 0.0041 17.1 12.0 2.0 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 BAD84513.1 - 0.12 11.6 22.5 1.3 8.3 22.5 2.0 1 1 0 1 1 1 0 ABC-2 family transporter protein Phage_holin_2_3 PF16080.5 BAD84513.1 - 0.29 10.9 2.2 0.97 9.2 0.4 2.6 2 0 0 2 2 2 0 Bacteriophage holin family HP1 Phage_holin_2_4 PF16082.5 BAD84513.1 - 0.59 9.9 2.1 1.3 8.8 0.1 2.3 2 0 0 2 2 2 0 Bacteriophage holin family, superfamily II-like Abhydrolase_9_N PF15420.6 BAD84513.1 - 0.59 10.1 5.3 0.098 12.6 1.4 1.6 2 0 0 2 2 2 0 Alpha/beta-hydrolase family N-terminus ABC_tran PF00005.27 BAD84515.1 - 6.5e-19 68.8 0.0 8.9e-19 68.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 BAD84515.1 - 5e-08 33.1 0.3 0.0029 17.5 0.1 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 BAD84515.1 - 8e-06 25.4 0.0 0.0063 16.0 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 BAD84515.1 - 1.7e-05 25.4 0.2 3.2e-05 24.5 0.2 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 BAD84515.1 - 0.00053 19.7 0.1 0.0011 18.7 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_ATPase PF09818.9 BAD84515.1 - 0.019 13.8 0.3 0.03 13.2 0.3 1.2 1 0 0 1 1 1 0 Predicted ATPase of the ABC class AAA_15 PF13175.6 BAD84515.1 - 0.038 13.7 0.1 0.063 13.0 0.1 1.3 1 0 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.6 BAD84515.1 - 0.078 12.7 0.0 0.22 11.2 0.0 1.8 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 BAD84515.1 - 0.083 13.1 0.1 0.17 12.1 0.1 1.7 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_27 PF13514.6 BAD84515.1 - 0.084 12.4 0.1 0.95 9.0 0.1 2.1 2 0 0 2 2 2 0 AAA domain PHP PF02811.19 BAD84516.1 - 8.7e-09 35.9 0.0 1.7e-08 34.9 0.0 1.4 1 1 0 1 1 1 1 PHP domain PHP_C PF13263.6 BAD84516.1 - 0.00044 19.9 0.0 0.0013 18.4 0.0 1.8 1 0 0 1 1 1 1 PHP-associated PI-PLC-C1 PF16670.5 BAD84516.1 - 0.17 11.0 0.0 0.2 10.7 0.0 1.2 1 0 0 1 1 1 0 Phosphoinositide phospholipase C, Ca2+-dependent B12-binding PF02310.19 BAD84517.1 - 1.4e-24 86.4 0.2 1.7e-24 86.1 0.2 1.1 1 0 0 1 1 1 1 B12 binding domain MoCF_biosynth PF00994.24 BAD84517.1 - 0.031 13.9 0.2 0.12 12.0 0.0 1.9 2 1 0 2 2 2 0 Probable molybdopterin binding domain Nitro_FeMo-Co PF02579.17 BAD84517.1 - 0.044 14.1 0.2 21 5.5 0.0 3.0 1 1 3 4 4 4 0 Dinitrogenase iron-molybdenum cofactor IMPDH PF00478.25 BAD84517.1 - 0.045 12.8 0.0 0.055 12.5 0.0 1.1 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain Radical_SAM PF04055.21 BAD84517.1 - 0.093 13.1 0.1 0.28 11.6 0.1 1.7 1 1 1 2 2 2 0 Radical SAM superfamily TPP_enzyme_N PF02776.18 BAD84517.1 - 0.12 12.0 0.0 6.2 6.4 0.0 2.1 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain MeaB PF03308.16 BAD84518.1 - 3.5e-103 344.2 1.8 4.4e-103 343.9 1.8 1.1 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB cobW PF02492.19 BAD84518.1 - 2.6e-08 33.7 2.0 1.7e-07 31.0 2.0 2.2 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain SRP54 PF00448.22 BAD84518.1 - 4.2e-05 23.3 0.1 0.00021 21.0 0.1 2.0 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain NTPase_1 PF03266.15 BAD84518.1 - 5e-05 23.3 1.1 0.0001 22.3 0.2 2.0 3 0 0 3 3 2 1 NTPase AAA_30 PF13604.6 BAD84518.1 - 9.3e-05 22.2 0.1 0.0003 20.6 0.0 1.9 2 0 0 2 2 2 1 AAA domain ATP_bind_1 PF03029.17 BAD84518.1 - 9.5e-05 22.3 0.0 0.0008 19.3 0.0 2.1 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein ABC_tran PF00005.27 BAD84518.1 - 0.00014 22.4 0.1 0.00029 21.3 0.1 1.5 1 0 0 1 1 1 1 ABC transporter AAA_22 PF13401.6 BAD84518.1 - 0.00038 20.7 0.0 0.001 19.3 0.0 1.7 1 0 0 1 1 1 1 AAA domain GTP_EFTU PF00009.27 BAD84518.1 - 0.00058 19.4 0.0 0.0076 15.8 0.0 2.2 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain AAA_29 PF13555.6 BAD84518.1 - 0.00086 19.0 0.0 0.0018 18.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain MMR_HSR1 PF01926.23 BAD84518.1 - 0.0015 18.6 0.3 0.0095 16.0 0.3 2.4 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_18 PF13238.6 BAD84518.1 - 0.0015 19.1 0.5 0.0069 16.9 0.0 2.4 3 0 0 3 3 2 1 AAA domain MobB PF03205.14 BAD84518.1 - 0.0026 17.6 0.1 0.0088 15.9 0.0 1.9 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.6 BAD84518.1 - 0.0035 17.8 0.1 0.009 16.4 0.0 1.7 2 0 0 2 2 2 1 AAA ATPase domain RsgA_GTPase PF03193.16 BAD84518.1 - 0.0043 17.0 0.0 0.093 12.6 0.0 2.4 3 0 0 3 3 2 1 RsgA GTPase AAA_19 PF13245.6 BAD84518.1 - 0.012 15.9 0.1 0.04 14.3 0.1 1.8 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 BAD84518.1 - 0.014 14.6 0.0 0.026 13.8 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin KAP_NTPase PF07693.14 BAD84518.1 - 0.016 14.5 0.0 0.016 14.5 0.0 1.3 1 1 0 1 1 1 0 KAP family P-loop domain TrwB_AAD_bind PF10412.9 BAD84518.1 - 0.017 14.0 0.0 0.028 13.3 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_23 PF13476.6 BAD84518.1 - 0.02 15.4 0.8 0.096 13.2 0.1 2.1 2 0 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 BAD84518.1 - 0.021 14.8 0.9 0.13 12.2 0.0 2.2 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_24 PF13479.6 BAD84518.1 - 0.033 13.9 0.2 0.28 10.9 0.1 2.3 3 0 0 3 3 3 0 AAA domain AAA_33 PF13671.6 BAD84518.1 - 0.041 14.0 0.1 0.12 12.5 0.0 1.8 2 0 0 2 2 1 0 AAA domain AAA_17 PF13207.6 BAD84518.1 - 0.042 14.3 0.7 0.19 12.2 0.0 2.3 2 0 0 2 2 2 0 AAA domain CbiA PF01656.23 BAD84518.1 - 0.047 13.8 0.0 0.076 13.1 0.0 1.4 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_28 PF13521.6 BAD84518.1 - 0.053 13.8 0.7 0.2 11.9 0.1 2.2 2 1 0 2 2 2 0 AAA domain NACHT PF05729.12 BAD84518.1 - 0.058 13.3 0.0 0.13 12.2 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_25 PF13481.6 BAD84518.1 - 0.062 12.9 0.6 2.4 7.7 0.2 2.9 2 1 1 3 3 3 0 AAA domain SpoVIF PF14069.6 BAD84518.1 - 0.067 13.0 0.2 0.37 10.6 0.2 2.0 2 0 0 2 2 2 0 Stage VI sporulation protein F NB-ARC PF00931.22 BAD84518.1 - 0.074 12.2 0.1 0.18 11.0 0.0 1.6 2 0 0 2 2 2 0 NB-ARC domain DAP3 PF10236.9 BAD84518.1 - 0.079 12.1 0.0 0.18 11.0 0.0 1.6 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 AAA_14 PF13173.6 BAD84518.1 - 0.12 12.5 0.1 0.39 10.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 BAD84518.1 - 0.12 12.8 0.0 0.5 10.8 0.0 2.1 2 1 1 3 3 1 0 RNA helicase Glyoxalase_4 PF13669.6 BAD84519.1 - 1.6e-24 86.3 0.0 1.8e-24 86.1 0.0 1.0 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase PF00903.25 BAD84519.1 - 1.2e-13 51.4 0.0 1.2e-13 51.3 0.0 1.0 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.6 BAD84519.1 - 5.1e-11 43.0 0.0 5.6e-11 42.9 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Osmo_CC PF08946.10 BAD84519.1 - 2.2 8.6 5.1 0.72 10.1 0.3 2.6 2 2 1 3 3 3 0 Osmosensory transporter coiled coil Acetyltransf_7 PF13508.7 BAD84520.1 - 2.5e-14 53.5 0.1 4.5e-14 52.6 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 BAD84520.1 - 3.4e-12 46.6 0.1 5.6e-12 45.9 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 BAD84520.1 - 3.4e-11 43.2 0.2 9.9e-11 41.7 0.0 1.8 3 0 0 3 3 3 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 BAD84520.1 - 3.8e-06 27.0 0.0 7.8e-06 26.0 0.0 1.5 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 BAD84520.1 - 5.5e-05 23.1 0.0 0.00011 22.1 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_CG PF14542.6 BAD84520.1 - 0.12 12.5 0.0 0.22 11.7 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase CT_A_B PF02626.15 BAD84521.1 - 3.9e-85 285.7 0.0 4.7e-85 285.4 0.0 1.0 1 0 0 1 1 1 1 Carboxyltransferase domain, subdomain A and B CT_C_D PF02682.16 BAD84522.1 - 1.6e-77 259.8 0.0 1.9e-77 259.6 0.0 1.0 1 0 0 1 1 1 1 Carboxyltransferase domain, subdomain C and D PIN PF01850.21 BAD84523.1 - 4.2e-16 59.6 0.3 4.8e-16 59.4 0.3 1.1 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.6 BAD84523.1 - 0.053 14.3 0.0 0.06 14.1 0.0 1.3 1 1 0 1 1 1 0 PIN domain DUF4411 PF14367.6 BAD84523.1 - 0.26 11.2 0.0 1.4 8.8 0.0 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4411) DUF104 PF01954.16 BAD84524.1 - 2.1e-16 60.1 1.9 2.5e-16 59.9 1.9 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF104 LamB_YcsF PF03746.16 BAD84525.1 - 6.5e-105 350.1 0.0 7.4e-105 349.9 0.0 1.0 1 0 0 1 1 1 1 LamB/YcsF family PIN_6 PF17146.4 BAD84526.1 - 1.9e-18 66.7 0.0 3e-18 66.1 0.0 1.3 1 0 0 1 1 1 1 PIN domain of ribonuclease PIN_5 PF08745.11 BAD84526.1 - 2.6e-05 23.7 0.2 3.7e-05 23.3 0.2 1.2 1 0 0 1 1 1 1 PINc domain ribonuclease Zn-ribbon_8 PF09723.10 BAD84526.1 - 2.7e-05 24.2 0.4 5.1e-05 23.3 0.4 1.4 1 0 0 1 1 1 1 Zinc ribbon domain HypA PF01155.19 BAD84526.1 - 0.0012 18.8 0.0 0.0025 17.8 0.0 1.5 1 1 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TF_Zn_Ribbon PF08271.12 BAD84526.1 - 0.0083 15.6 0.7 4.6 6.8 0.0 2.5 2 0 0 2 2 2 2 TFIIB zinc-binding DZR PF12773.7 BAD84526.1 - 0.0099 15.9 0.2 0.016 15.2 0.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon Prok-RING_1 PF14446.6 BAD84526.1 - 0.014 15.3 0.8 0.023 14.6 0.8 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 DNA_RNApol_7kD PF03604.13 BAD84526.1 - 0.023 14.3 0.7 0.37 10.5 1.0 2.3 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit NOB1_Zn_bind PF08772.11 BAD84526.1 - 0.035 14.3 0.1 0.061 13.5 0.1 1.4 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like A2L_zn_ribbon PF08792.10 BAD84526.1 - 0.096 12.4 2.7 4.3 7.2 0.1 2.5 2 0 0 2 2 2 0 A2L zinc ribbon domain ACT_7 PF13840.6 BAD84526.1 - 0.12 12.2 0.0 0.24 11.2 0.0 1.5 1 0 0 1 1 1 0 ACT domain zinc-ribbons_6 PF07191.12 BAD84526.1 - 0.12 12.3 0.0 0.22 11.5 0.0 1.4 1 0 0 1 1 1 0 zinc-ribbons Zn_ribbon_SprT PF17283.2 BAD84526.1 - 0.39 10.7 7.1 4 7.4 0.4 2.5 2 0 0 2 2 2 0 SprT-like zinc ribbon domain YhfH PF14149.6 BAD84526.1 - 7 6.7 6.1 10 6.2 0.9 2.3 1 1 1 2 2 2 0 YhfH-like protein AAA_18 PF13238.6 BAD84527.1 - 1.8e-23 83.5 0.3 3.6e-23 82.5 0.3 1.5 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 BAD84527.1 - 8.4e-11 42.4 1.1 6e-10 39.7 0.3 2.4 1 1 1 2 2 2 1 AAA domain SKI PF01202.22 BAD84527.1 - 1.6e-10 41.4 0.0 0.00022 21.4 0.0 2.1 2 0 0 2 2 2 2 Shikimate kinase Cytidylate_kin PF02224.18 BAD84527.1 - 2.1e-08 34.1 0.3 0.0074 16.0 0.0 2.5 2 1 0 2 2 2 2 Cytidylate kinase dNK PF01712.19 BAD84527.1 - 1.9e-06 27.9 0.0 0.035 14.0 0.0 2.2 2 0 0 2 2 2 2 Deoxynucleoside kinase AAA_33 PF13671.6 BAD84527.1 - 2.3e-06 27.8 0.2 0.00011 22.4 0.2 2.6 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 BAD84527.1 - 5.4e-06 26.9 0.0 2e-05 25.1 0.0 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 BAD84527.1 - 7.9e-06 26.2 0.4 4e-05 23.9 0.1 2.0 1 1 2 3 3 3 1 AAA domain AAA_22 PF13401.6 BAD84527.1 - 4e-05 23.9 0.2 0.0028 17.9 0.1 2.2 1 1 0 2 2 2 1 AAA domain Cytidylate_kin2 PF13189.6 BAD84527.1 - 6.3e-05 23.2 0.5 0.0005 20.3 0.1 2.1 1 1 0 2 2 2 1 Cytidylate kinase-like family Thymidylate_kin PF02223.17 BAD84527.1 - 0.00027 20.7 0.3 0.31 10.7 0.0 2.1 2 0 0 2 2 2 2 Thymidylate kinase AAA_5 PF07728.14 BAD84527.1 - 0.00034 20.6 0.1 0.037 14.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) NTPase_1 PF03266.15 BAD84527.1 - 0.00064 19.7 1.0 0.002 18.0 0.1 2.0 2 0 0 2 2 2 1 NTPase UPF0180 PF03698.13 BAD84527.1 - 0.00085 19.4 3.1 0.0062 16.7 1.1 2.6 2 1 0 2 2 2 1 Uncharacterised protein family (UPF0180) AAA_16 PF13191.6 BAD84527.1 - 0.0029 18.0 0.3 0.013 15.9 0.3 2.0 1 1 0 1 1 1 1 AAA ATPase domain Zeta_toxin PF06414.12 BAD84527.1 - 0.0044 16.3 1.1 0.13 11.5 0.1 3.1 1 1 2 3 3 3 1 Zeta toxin AAA_14 PF13173.6 BAD84527.1 - 0.0072 16.4 0.0 0.016 15.2 0.0 1.6 2 0 0 2 2 1 1 AAA domain RuvB_N PF05496.12 BAD84527.1 - 0.0082 15.9 0.4 0.016 15.0 0.0 1.7 2 0 0 2 2 1 1 Holliday junction DNA helicase RuvB P-loop domain CoaE PF01121.20 BAD84527.1 - 0.0096 15.6 0.1 0.017 14.8 0.0 1.5 1 1 0 1 1 1 1 Dephospho-CoA kinase Rad17 PF03215.15 BAD84527.1 - 0.02 14.8 0.1 0.11 12.3 0.0 2.0 1 1 0 2 2 2 0 Rad17 P-loop domain TsaE PF02367.17 BAD84527.1 - 0.024 14.6 0.2 0.083 12.9 0.0 2.1 2 1 1 3 3 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE CPT PF07931.12 BAD84527.1 - 0.024 14.5 0.1 5.5 6.8 0.0 2.4 1 1 1 2 2 2 0 Chloramphenicol phosphotransferase-like protein PrcB_C PF14343.6 BAD84527.1 - 0.025 14.7 1.3 0.37 10.9 0.9 2.2 2 0 0 2 2 2 0 PrcB C-terminal PRK PF00485.18 BAD84527.1 - 0.036 13.8 0.0 0.066 12.9 0.0 1.5 2 0 0 2 2 1 0 Phosphoribulokinase / Uridine kinase family cobW PF02492.19 BAD84527.1 - 0.041 13.5 0.3 0.071 12.7 0.3 1.6 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain KTI12 PF08433.10 BAD84527.1 - 0.045 13.2 0.0 0.077 12.4 0.0 1.5 2 0 0 2 2 2 0 Chromatin associated protein KTI12 SRP54 PF00448.22 BAD84527.1 - 0.046 13.3 0.9 2.3 7.8 0.2 2.1 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain RNA_helicase PF00910.22 BAD84527.1 - 0.062 13.7 0.0 0.11 12.8 0.0 1.5 1 0 0 1 1 1 0 RNA helicase ADK PF00406.22 BAD84527.1 - 0.067 13.3 0.8 5.4 7.1 0.0 2.2 1 1 0 2 2 2 0 Adenylate kinase AAA_26 PF13500.6 BAD84527.1 - 0.079 12.8 1.0 0.99 9.2 0.0 2.3 2 1 0 2 2 2 0 AAA domain AAA_3 PF07726.11 BAD84527.1 - 0.091 12.6 0.1 0.24 11.2 0.0 1.7 2 0 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.22 BAD84527.1 - 0.1 11.8 0.1 0.18 10.9 0.1 1.4 1 0 0 1 1 1 0 NB-ARC domain MeaB PF03308.16 BAD84527.1 - 0.11 11.5 0.5 0.2 10.6 0.1 1.6 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB ABC_tran PF00005.27 BAD84527.1 - 0.12 12.9 0.4 0.53 10.8 0.4 1.9 1 1 1 2 2 2 0 ABC transporter NACHT PF05729.12 BAD84527.1 - 0.12 12.2 0.1 0.38 10.6 0.0 1.8 1 1 2 3 3 3 0 NACHT domain AAA_24 PF13479.6 BAD84527.1 - 0.13 12.0 0.8 0.15 11.8 0.8 1.6 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 BAD84527.1 - 0.17 11.5 1.5 0.52 10.0 1.5 1.9 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 BAD84527.1 - 0.19 11.8 0.7 0.6 10.2 0.7 2.1 1 1 0 1 1 1 0 50S ribosome-binding GTPase ATPase PF06745.13 BAD84527.1 - 0.26 10.6 3.0 2.3 7.5 0.2 2.3 2 1 0 2 2 2 0 KaiC CbiA PF01656.23 BAD84527.1 - 0.39 10.8 1.9 0.86 9.7 1.9 1.8 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain ZapB PF06005.12 BAD84528.1 - 0.00021 21.6 2.9 0.00026 21.4 1.3 1.8 2 0 0 2 2 2 1 Cell division protein ZapB YabA PF06156.13 BAD84528.1 - 0.0037 17.9 0.5 0.0068 17.0 0.2 1.6 2 0 0 2 2 2 1 Initiation control protein YabA TSC22 PF01166.18 BAD84528.1 - 0.047 14.0 3.0 0.3 11.4 0.5 2.5 1 1 1 2 2 2 0 TSC-22/dip/bun family bZIP_2 PF07716.15 BAD84528.1 - 0.076 13.1 4.1 1.2 9.3 0.1 2.7 3 0 0 3 3 3 0 Basic region leucine zipper GAS PF13851.6 BAD84528.1 - 0.081 12.3 1.6 0.2 11.0 0.9 1.7 1 1 1 2 2 2 0 Growth-arrest specific micro-tubule binding Phage_GP20 PF06810.11 BAD84528.1 - 0.1 12.4 0.1 0.15 11.8 0.1 1.4 1 0 0 1 1 1 0 Phage minor structural protein GP20 JIP_LZII PF16471.5 BAD84528.1 - 0.27 11.4 5.1 2.7 8.2 0.3 2.7 3 0 0 3 3 3 0 JNK-interacting protein leucine zipper II bZIP_1 PF00170.21 BAD84528.1 - 0.27 11.3 6.7 1 9.5 0.9 2.7 2 1 1 3 3 3 0 bZIP transcription factor HEPN PF05168.14 BAD84529.1 - 1.7e-24 86.2 1.5 1.9e-24 86.0 1.5 1.0 1 0 0 1 1 1 1 HEPN domain EcKinase PF02958.20 BAD84529.1 - 0.028 13.8 0.0 0.029 13.7 0.0 1.0 1 0 0 1 1 1 0 Ecdysteroid kinase DUF4287 PF14117.6 BAD84529.1 - 0.057 13.6 0.0 0.35 11.0 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4287) Polbeta PF18765.1 BAD84530.1 - 3.4e-10 39.9 0.1 7.3e-10 38.8 0.1 1.6 1 1 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 BAD84530.1 - 1.4e-09 38.1 0.2 2.4e-09 37.3 0.2 1.4 1 0 0 1 1 1 1 Nucleotidyltransferase domain HTH_20 PF12840.7 BAD84530.1 - 0.00026 21.0 0.0 0.00061 19.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Adenyl_cycl_N PF12633.7 BAD84530.1 - 0.00039 20.4 0.0 0.00054 19.9 0.0 1.2 1 0 0 1 1 1 1 Adenylate cyclase NT domain MarR_2 PF12802.7 BAD84530.1 - 0.00065 19.5 0.1 0.0016 18.3 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_41 PF14502.6 BAD84530.1 - 0.0046 16.6 0.1 0.16 11.7 0.1 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.19 BAD84530.1 - 0.017 15.0 0.1 0.054 13.4 0.1 1.8 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB DUF4423 PF14394.6 BAD84530.1 - 0.022 14.5 0.0 0.042 13.5 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_5 PF01022.20 BAD84530.1 - 0.035 14.0 0.1 0.077 12.9 0.1 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Rrf2 PF02082.20 BAD84530.1 - 0.043 14.2 0.1 0.081 13.3 0.1 1.4 1 0 0 1 1 1 0 Transcriptional regulator HTH_IclR PF09339.10 BAD84530.1 - 0.048 13.5 0.1 0.14 11.9 0.1 1.9 1 1 0 1 1 1 0 IclR helix-turn-helix domain Fe_dep_repress PF01325.19 BAD84530.1 - 0.053 13.7 0.1 0.12 12.6 0.1 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_28 PF13518.6 BAD84530.1 - 0.057 13.6 0.0 0.11 12.7 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Crp_2 PF13545.6 BAD84530.1 - 0.062 13.3 0.3 0.15 12.0 0.0 1.9 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain DUF2408 PF10303.9 BAD84531.1 - 0.0027 18.2 5.8 0.0031 18.1 5.8 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2408) FapA PF03961.13 BAD84531.1 - 0.005 15.5 9.3 0.0054 15.4 9.3 1.0 1 0 0 1 1 1 1 Flagellar Assembly Protein A Metal_resist PF13801.6 BAD84531.1 - 0.0052 17.0 2.8 0.0066 16.6 2.8 1.2 1 0 0 1 1 1 1 Heavy-metal resistance Syntaxin-6_N PF09177.11 BAD84531.1 - 0.011 16.2 5.9 0.02 15.4 5.9 1.4 1 1 0 1 1 1 0 Syntaxin 6, N-terminal MerR-DNA-bind PF09278.11 BAD84531.1 - 0.024 15.1 3.4 0.024 15.1 3.4 1.9 2 0 0 2 2 2 0 MerR, DNA binding DUF4298 PF14131.6 BAD84531.1 - 0.035 14.1 2.0 0.048 13.6 2.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4298) p31comet PF06581.12 BAD84531.1 - 0.036 13.3 0.4 0.04 13.1 0.4 1.1 1 0 0 1 1 1 0 Mad1 and Cdc20-bound-Mad2 binding ADIP PF11559.8 BAD84531.1 - 0.045 13.8 11.3 0.053 13.6 11.3 1.1 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding Herpes_UL36 PF03586.13 BAD84531.1 - 0.047 13.0 0.0 0.05 12.9 0.0 1.1 1 0 0 1 1 1 0 Herpesvirus UL36 tegument protein RBB1NT PF08169.11 BAD84531.1 - 0.048 13.8 0.2 0.19 11.9 0.0 1.9 1 1 0 2 2 2 0 RBB1NT (NUC162) domain ZapB PF06005.12 BAD84531.1 - 0.06 13.8 5.0 0.06 13.8 5.0 2.8 1 1 2 3 3 3 0 Cell division protein ZapB YscO PF07321.12 BAD84531.1 - 0.061 13.3 14.7 0.083 12.8 14.7 1.3 1 0 0 1 1 1 0 Type III secretion protein YscO FlxA PF14282.6 BAD84531.1 - 0.066 13.2 0.8 0.086 12.8 0.8 1.3 1 0 0 1 1 1 0 FlxA-like protein WDCP PF15390.6 BAD84531.1 - 0.081 11.3 0.9 0.091 11.1 0.9 1.0 1 0 0 1 1 1 0 WD repeat and coiled-coil-containing protein family P4Ha_N PF08336.11 BAD84531.1 - 0.097 12.7 5.2 0.077 13.0 3.9 1.6 1 1 0 1 1 1 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region Fib_alpha PF08702.10 BAD84531.1 - 0.097 12.9 2.1 0.12 12.5 0.7 1.5 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family BST2 PF16716.5 BAD84531.1 - 0.1 13.2 14.1 0.71 10.5 2.6 2.2 1 1 1 2 2 2 0 Bone marrow stromal antigen 2 IFT57 PF10498.9 BAD84531.1 - 0.12 11.3 9.6 0.14 11.1 9.6 1.0 1 0 0 1 1 1 0 Intra-flagellar transport protein 57 Sec2p PF06428.11 BAD84531.1 - 0.18 11.8 12.4 0.034 14.1 4.5 2.2 1 1 1 2 2 2 0 GDP/GTP exchange factor Sec2p YabA PF06156.13 BAD84531.1 - 0.18 12.4 11.8 0.14 12.8 8.3 2.0 1 1 1 2 2 2 0 Initiation control protein YabA Spc7 PF08317.11 BAD84531.1 - 0.21 10.5 13.0 0.22 10.3 13.0 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein DUF4407 PF14362.6 BAD84531.1 - 0.29 10.4 5.2 0.45 9.8 5.2 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) APG6_N PF17675.1 BAD84531.1 - 0.33 11.5 17.2 0.44 11.1 17.2 1.2 1 0 0 1 1 1 0 Apg6 coiled-coil region V_ATPase_I PF01496.19 BAD84531.1 - 0.38 8.6 7.2 0.41 8.5 7.2 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF1664 PF07889.12 BAD84531.1 - 0.4 10.7 2.7 0.69 10.0 2.7 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) FlaC_arch PF05377.11 BAD84531.1 - 0.41 11.1 6.7 0.35 11.3 0.6 2.6 1 1 1 2 2 2 0 Flagella accessory protein C (FlaC) OmpH PF03938.14 BAD84531.1 - 0.57 10.5 9.7 0.79 10.1 9.7 1.3 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) Prefoldin_2 PF01920.20 BAD84531.1 - 0.62 10.1 18.1 0.038 13.9 8.4 2.1 1 1 1 2 2 2 0 Prefoldin subunit TSC22 PF01166.18 BAD84531.1 - 0.89 9.9 13.6 0.27 11.6 3.4 2.6 1 1 2 3 3 3 0 TSC-22/dip/bun family KfrA_N PF11740.8 BAD84531.1 - 1.2 9.8 8.0 0.25 12.0 0.8 2.0 1 1 1 2 2 2 0 Plasmid replication region DNA-binding N-term Asp-B-Hydro_N PF05279.11 BAD84531.1 - 1.2 9.1 11.0 1.3 9.1 11.0 1.1 1 0 0 1 1 1 0 Aspartyl beta-hydroxylase N-terminal region A1_Propeptide PF07966.12 BAD84531.1 - 1.3 8.9 9.0 7.4 6.5 0.1 3.7 3 1 1 4 4 4 0 A1 Propeptide UPF0242 PF06785.11 BAD84531.1 - 1.6 8.8 12.5 1.8 8.7 12.5 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus Atg14 PF10186.9 BAD84531.1 - 1.6 7.7 9.8 2.2 7.3 9.8 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 YtxH PF12732.7 BAD84531.1 - 1.7 9.3 5.2 12 6.5 5.2 2.0 1 1 0 1 1 1 0 YtxH-like protein VIT1 PF01988.19 BAD84531.1 - 1.7 8.5 3.7 1.8 8.3 3.7 1.1 1 0 0 1 1 1 0 VIT family GrpE PF01025.19 BAD84531.1 - 1.7 8.3 13.9 3.5 7.3 13.9 1.6 1 1 0 1 1 1 0 GrpE XhlA PF10779.9 BAD84531.1 - 2.1 8.6 7.0 1.2 9.4 3.1 2.2 1 1 1 2 2 2 0 Haemolysin XhlA Fmp27_WPPW PF10359.9 BAD84531.1 - 2.1 7.1 9.0 2.2 7.0 9.0 1.0 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain zf-C4H2 PF10146.9 BAD84531.1 - 2.2 8.5 10.7 2.5 8.4 10.7 1.1 1 0 0 1 1 1 0 Zinc finger-containing protein Csm1_N PF18504.1 BAD84531.1 - 2.2 8.7 14.3 0.38 11.1 6.7 2.2 1 1 1 2 2 2 0 Csm1 N-terminal domain bZIP_2 PF07716.15 BAD84531.1 - 2.7 8.2 18.9 3 8.0 8.2 2.3 1 1 1 2 2 2 0 Basic region leucine zipper Cep57_CLD_2 PF14197.6 BAD84531.1 - 3.2 7.9 21.1 9.3 6.4 16.7 2.8 1 1 1 2 2 2 0 Centrosome localisation domain of PPC89 TMPIT PF07851.13 BAD84531.1 - 3.3 6.9 5.0 3.4 6.8 5.0 1.1 1 0 0 1 1 1 0 TMPIT-like protein DUF883 PF05957.13 BAD84531.1 - 3.8 8.2 9.0 5.1 7.8 3.7 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) DUF5320 PF17253.2 BAD84531.1 - 3.8 8.6 9.4 0.24 12.5 1.7 2.0 2 0 0 2 2 2 0 Family of unknown function (DUF5320) DUF2205 PF10224.9 BAD84531.1 - 4.6 7.3 10.8 0.82 9.7 5.4 2.1 1 1 1 2 2 2 0 Short coiled-coil protein CCDC-167 PF15188.6 BAD84531.1 - 5 7.5 18.6 1.3 9.5 10.5 2.1 1 1 1 2 2 2 0 Coiled-coil domain-containing protein 167 CorA PF01544.18 BAD84531.1 - 5.3 6.3 7.4 6.7 5.9 7.4 1.1 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein PIN PF01850.21 BAD84532.1 - 1.7e-13 51.1 0.0 2.4e-13 50.6 0.0 1.2 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.6 BAD84532.1 - 1.8e-08 35.1 0.0 2.2e-08 34.8 0.0 1.1 1 0 0 1 1 1 1 PIN domain PIN_12 PF16289.5 BAD84532.1 - 0.055 14.0 0.0 0.1 13.1 0.0 1.3 1 1 0 1 1 1 0 PIN domain Crp PF00325.20 BAD84533.1 - 0.056 13.1 0.1 12 5.6 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory proteins, crp family HhH-GPD PF00730.25 BAD84534.1 - 1.3e-13 51.4 0.0 2.2e-13 50.6 0.0 1.4 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein GntR PF00392.21 BAD84535.1 - 0.028 14.1 0.0 0.4 10.4 0.0 2.5 3 0 0 3 3 3 0 Bacterial regulatory proteins, gntR family NfeD PF01957.18 BAD84536.1 - 1.3e-21 76.7 2.9 4.4e-21 75.0 2.9 2.0 1 0 0 1 1 1 1 NfeD-like C-terminal, partner-binding CLP_protease PF00574.23 BAD84536.1 - 1.8e-06 27.9 0.4 2.8e-06 27.4 0.4 1.2 1 0 0 1 1 1 1 Clp protease SDH_sah PF01972.16 BAD84536.1 - 0.00033 19.7 1.1 0.0006 18.9 0.7 1.5 1 1 0 1 1 1 1 Serine dehydrogenase proteinase Peptidase_S49 PF01343.18 BAD84536.1 - 0.054 13.4 0.7 0.11 12.4 0.7 1.5 1 0 0 1 1 1 0 Peptidase family S49 CD34_antigen PF06365.12 BAD84536.1 - 0.16 11.5 0.0 0.28 10.7 0.0 1.4 1 0 0 1 1 1 0 CD34/Podocalyxin family Band_7 PF01145.25 BAD84537.1 - 2.2e-39 135.3 7.2 3.4e-39 134.7 7.2 1.3 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 BAD84537.1 - 2e-05 24.4 1.6 5.8e-05 22.9 0.6 2.2 2 1 0 2 2 2 1 SPFH domain-Band 7 family DUF5304 PF17230.2 BAD84537.1 - 0.83 9.9 7.1 0.32 11.2 3.3 2.0 2 0 0 2 2 2 0 Family of unknown function (DUF5304) CbiA PF01656.23 BAD84538.1 - 5.6e-25 87.9 0.3 8.7e-25 87.2 0.3 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 BAD84538.1 - 1.6e-22 80.3 0.1 2.4e-22 79.7 0.1 1.3 1 0 0 1 1 1 1 AAA domain ParA PF10609.9 BAD84538.1 - 2.3e-20 73.1 3.6 8e-20 71.3 3.6 1.9 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase Fer4_NifH PF00142.18 BAD84538.1 - 2.9e-13 49.9 0.2 1.3e-07 31.3 0.1 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CBP_BcsQ PF06564.12 BAD84538.1 - 3.2e-11 43.2 0.0 6.5e-11 42.2 0.0 1.5 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ MipZ PF09140.11 BAD84538.1 - 2.1e-09 37.1 0.3 1.5e-08 34.2 0.3 2.0 1 1 0 1 1 1 1 ATPase MipZ ArsA_ATPase PF02374.15 BAD84538.1 - 5.1e-07 29.2 3.3 9.5e-07 28.3 0.7 2.1 1 1 0 2 2 2 1 Anion-transporting ATPase AAA_26 PF13500.6 BAD84538.1 - 2.1e-05 24.5 1.0 2.1e-05 24.5 1.0 2.2 2 1 0 2 2 2 1 AAA domain VirC1 PF07015.11 BAD84538.1 - 0.00051 19.4 1.9 0.00051 19.4 0.3 1.7 2 0 0 2 2 2 1 VirC1 protein AAA_30 PF13604.6 BAD84538.1 - 0.003 17.3 0.0 0.004 16.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain SRP54 PF00448.22 BAD84538.1 - 0.0031 17.1 0.6 0.01 15.5 0.4 1.8 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain APS_kinase PF01583.20 BAD84538.1 - 0.012 15.5 0.1 0.023 14.6 0.1 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_25 PF13481.6 BAD84538.1 - 0.031 13.9 0.9 0.097 12.2 0.9 2.0 1 1 0 1 1 1 0 AAA domain PhoH PF02562.16 BAD84538.1 - 0.11 12.0 0.2 0.19 11.1 0.2 1.5 1 0 0 1 1 1 0 PhoH-like protein AAA_6 PF12774.7 BAD84538.1 - 0.19 10.6 0.1 0.35 9.8 0.1 1.4 1 0 0 1 1 1 0 Hydrolytic ATP binding site of dynein motor region CLP1_P PF16575.5 BAD84538.1 - 0.2 11.4 0.1 0.42 10.4 0.1 1.5 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop Pho88 PF10032.9 BAD84539.1 - 0.0042 16.4 0.2 0.0046 16.2 0.2 1.0 1 0 0 1 1 1 1 Phosphate transport (Pho88) Ac76 PF05814.11 BAD84539.1 - 0.0079 16.2 1.4 0.01 15.8 1.4 1.2 1 0 0 1 1 1 1 Orf76 (Ac76) ABC2_membrane_3 PF12698.7 BAD84539.1 - 0.015 14.4 0.1 0.017 14.2 0.1 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein TCR_zetazeta PF11628.8 BAD84539.1 - 0.016 14.8 1.5 0.024 14.3 1.5 1.2 1 0 0 1 1 1 0 T-cell surface glycoprotein CD3 zeta chain VirB8 PF04335.13 BAD84539.1 - 0.019 14.8 0.0 0.02 14.7 0.0 1.0 1 0 0 1 1 1 0 VirB8 protein DUF4446 PF14584.6 BAD84539.1 - 0.035 14.1 0.3 0.041 13.9 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4446) DUF3377 PF11857.8 BAD84539.1 - 0.12 12.3 2.3 0.19 11.7 2.3 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3377) EBV-NA1 PF02905.14 BAD84540.1 - 0.15 11.9 0.0 0.18 11.6 0.0 1.1 1 0 0 1 1 1 0 Epstein Barr virus nuclear antigen-1, DNA-binding domain PYNP_C PF07831.13 BAD84541.1 - 1.3e-16 60.0 0.1 4.5e-16 58.3 0.1 2.0 1 0 0 1 1 1 1 Pyrimidine nucleoside phosphorylase C-terminal domain Glycos_trans_3N PF02885.17 BAD84541.1 - 2e-15 56.4 0.9 9.6e-15 54.2 0.5 2.3 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain Glycos_transf_3 PF00591.21 BAD84541.1 - 7.1e-15 55.3 1.1 2e-14 53.8 1.1 1.8 1 1 0 1 1 1 1 Glycosyl transferase family, a/b domain DUF2254 PF10011.9 BAD84541.1 - 3.5e-06 26.1 0.0 5.4e-06 25.5 0.0 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2254) CDC48_N PF02359.18 BAD84541.1 - 0.0022 18.1 0.1 0.012 15.7 0.1 2.4 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain Biotin_lipoyl PF00364.22 BAD84541.1 - 0.0037 17.1 0.0 0.014 15.2 0.0 2.0 1 0 0 1 1 1 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 BAD84541.1 - 0.0061 16.4 0.0 0.015 15.2 0.0 1.6 1 0 0 1 1 1 1 Biotin-lipoyl like Molydop_binding PF01568.21 BAD84541.1 - 0.011 15.7 0.0 0.036 14.1 0.0 1.8 2 0 0 2 2 2 0 Molydopterin dinucleotide binding domain MoaC PF01967.21 BAD84543.1 - 4.9e-53 178.8 0.4 5.6e-53 178.7 0.4 1.0 1 0 0 1 1 1 1 MoaC family DUF5436 PF17504.2 BAD84543.1 - 0.12 12.7 0.1 0.23 11.8 0.1 1.5 1 0 0 1 1 1 0 Family of unknown function (DUF5436) ABC_tran PF00005.27 BAD84544.1 - 5.9e-31 107.8 0.0 8.9e-31 107.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 BAD84544.1 - 1.5e-10 41.3 2.3 8.8e-08 32.3 0.0 2.4 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 BAD84544.1 - 1.5e-09 38.4 0.2 3.1e-09 37.4 0.2 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) MukB PF04310.12 BAD84544.1 - 0.0096 15.7 0.2 0.024 14.5 0.1 1.6 2 0 0 2 2 2 1 MukB N-terminal AAA_23 PF13476.6 BAD84544.1 - 0.027 15.0 2.4 0.046 14.2 2.4 1.7 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 BAD84544.1 - 0.031 14.0 0.1 0.054 13.2 0.1 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain SMC_N PF02463.19 BAD84544.1 - 0.034 13.6 0.1 4.3 6.7 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain SRP54 PF00448.22 BAD84544.1 - 0.079 12.6 0.0 0.16 11.6 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_19 PF13245.6 BAD84544.1 - 0.15 12.4 0.0 0.37 11.1 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 BAD84544.1 - 0.17 11.6 0.0 0.47 10.1 0.0 1.7 1 1 0 1 1 1 0 AAA domain NPCBM_assoc PF10633.9 BAD84545.1 - 6.4e-15 55.2 20.7 1.3e-06 28.6 3.8 6.7 6 1 0 6 6 6 3 NPCBM-associated, NEW3 domain of alpha-galactosidase CarboxypepD_reg PF13620.6 BAD84545.1 - 4.8e-08 33.2 14.3 1.4e-05 25.2 0.0 5.8 7 1 0 7 7 7 2 Carboxypeptidase regulatory-like domain PCC_BT PF18140.1 BAD84545.1 - 8.8e-06 26.1 1.5 5.1 7.5 0.1 4.2 4 0 0 4 4 4 3 Propionyl-coenzyme A carboxylase BT domain MG2 PF01835.19 BAD84545.1 - 0.00043 20.7 0.2 1.5 9.3 0.0 4.6 5 1 1 6 6 6 1 MG2 domain CarbopepD_reg_2 PF13715.6 BAD84545.1 - 0.0019 18.2 0.5 0.62 10.1 0.0 3.8 3 0 0 3 3 3 1 CarboxypepD_reg-like domain DUF11 PF01345.18 BAD84545.1 - 0.0023 18.2 5.3 0.35 11.2 0.0 4.5 4 2 1 5 5 5 1 Domain of unknown function DUF11 PEGA PF08308.11 BAD84545.1 - 0.0046 16.8 1.5 0.21 11.5 0.0 4.1 4 0 0 4 4 4 1 PEGA domain Big_3 PF07523.12 BAD84545.1 - 0.0072 16.6 17.5 0.19 12.0 1.3 5.6 6 0 0 6 6 6 2 Bacterial Ig-like domain (group 3) DUF4397 PF14344.6 BAD84545.1 - 0.057 14.2 5.6 6.3 7.6 0.0 4.8 5 1 1 6 6 6 0 Domain of unknown function (DUF4397) DUF4469 PF14734.6 BAD84545.1 - 0.12 12.5 0.0 0.89 9.8 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4469) with IG-like fold FlgD_ig PF13860.6 BAD84545.1 - 0.14 12.1 5.1 7.8 6.4 0.1 4.5 4 0 0 4 4 4 0 FlgD Ig-like domain DUF4981 PF16353.5 BAD84545.1 - 0.29 11.7 0.7 28 5.3 0.0 3.8 4 1 1 5 5 5 0 Domain of unknown function(DUF4981) Invasin_D3 PF09134.10 BAD84545.1 - 0.39 11.0 14.6 2.1 8.7 0.0 5.4 5 1 0 6 6 6 0 Invasin, domain 3 Big_1 PF02369.16 BAD84545.1 - 0.71 9.9 0.0 0.71 9.9 0.0 4.6 5 0 0 5 5 5 0 Bacterial Ig-like domain (group 1) DUF1735 PF08522.10 BAD84545.1 - 1.8 9.2 9.7 10 6.8 0.0 5.3 3 2 2 5 5 5 0 Domain of unknown function (DUF1735) ABC2_membrane_2 PF12679.7 BAD84546.1 - 7.2e-67 225.7 17.5 8.1e-67 225.5 17.5 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 BAD84546.1 - 1.1e-11 44.4 19.8 1.1e-11 44.4 19.8 2.0 1 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 BAD84546.1 - 2.3e-10 40.7 15.9 2.3e-10 40.7 15.9 1.8 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 BAD84546.1 - 7.6e-08 32.0 20.2 7.6e-08 32.0 20.2 2.6 3 0 0 3 3 3 2 ABC-2 type transporter ABC2_membrane_5 PF13346.6 BAD84546.1 - 8e-05 22.3 13.8 8e-05 22.3 13.8 2.6 2 1 1 3 3 3 1 ABC-2 family transporter protein RtcB PF01139.17 BAD84547.1 - 4.4e-181 602.5 0.1 5e-181 602.4 0.1 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB Complex1_LYR PF05347.15 BAD84547.1 - 0.096 12.8 0.1 0.19 11.8 0.1 1.5 1 0 0 1 1 1 0 Complex 1 protein (LYR family) Methyltranf_PUA PF13636.6 BAD84548.1 - 5.1e-15 55.2 0.4 9.1e-15 54.4 0.4 1.4 1 0 0 1 1 1 1 RNA-binding PUA-like domain of methyltransferase RsmF Methyltr_RsmB-F PF01189.17 BAD84549.1 - 3.1e-53 180.4 0.0 4e-53 180.0 0.0 1.1 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltr_RsmF_N PF17125.5 BAD84549.1 - 1.1e-16 61.1 0.0 4.6e-16 59.1 0.0 1.9 2 0 0 2 2 2 1 N-terminal domain of 16S rRNA methyltransferase RsmF Met_10 PF02475.16 BAD84549.1 - 0.00016 21.5 0.0 0.00026 20.8 0.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein FtsJ PF01728.19 BAD84549.1 - 0.0048 17.0 0.0 0.0078 16.3 0.0 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_25 PF13649.6 BAD84549.1 - 0.019 15.6 0.1 0.089 13.5 0.1 2.0 1 1 0 1 1 1 0 Methyltransferase domain Archease PF01951.16 BAD84550.1 - 1.9e-46 157.7 0.1 2.1e-46 157.6 0.1 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) Pantoate_transf PF02548.15 BAD84552.1 - 3.1e-107 357.8 0.3 3.6e-107 357.6 0.3 1.0 1 0 0 1 1 1 1 Ketopantoate hydroxymethyltransferase PEP_mutase PF13714.6 BAD84552.1 - 9e-10 38.4 0.5 2e-08 34.0 0.1 2.1 2 0 0 2 2 2 1 Phosphoenolpyruvate phosphomutase NanE PF04131.14 BAD84552.1 - 0.025 13.8 0.9 4.6 6.4 0.1 3.0 3 0 0 3 3 3 0 Putative N-acetylmannosamine-6-phosphate epimerase BtpA PF03437.15 BAD84552.1 - 0.081 12.3 0.2 11 5.4 0.0 2.5 2 1 0 2 2 2 0 BtpA family Glycos_transf_2 PF00535.26 BAD84553.1 - 9.3e-39 132.9 0.0 1.1e-38 132.7 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 BAD84553.1 - 3.6e-11 43.4 0.0 4.7e-11 43.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 BAD84553.1 - 5.2e-08 32.7 0.0 1.1e-07 31.6 0.0 1.5 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 BAD84553.1 - 4.7e-05 23.8 0.0 8.4e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 PAP2_3 PF14378.6 BAD84554.1 - 6.8e-11 42.2 14.5 6.8e-11 42.2 14.5 1.8 2 1 0 2 2 2 1 PAP2 superfamily PAP2 PF01569.21 BAD84554.1 - 1.8e-06 27.8 5.1 1.8e-06 27.8 5.1 2.4 2 1 1 3 3 3 1 PAP2 superfamily ThiI PF02568.14 BAD84555.1 - 1.4e-57 194.5 0.0 1.6e-57 194.3 0.0 1.0 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) QueC PF06508.13 BAD84555.1 - 1.3e-08 34.6 0.0 8.5e-06 25.4 0.0 2.3 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 BAD84555.1 - 0.00071 18.5 0.0 0.005 15.7 0.0 1.9 2 0 0 2 2 2 1 tRNA methyl transferase PAPS_reduct PF01507.19 BAD84555.1 - 0.053 13.6 0.0 0.065 13.3 0.0 1.1 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family ATP_bind_3 PF01171.20 BAD84555.1 - 0.091 12.5 0.0 1.1 8.9 0.0 2.0 2 0 0 2 2 2 0 PP-loop family DUF998 PF06197.13 BAD84556.1 - 1.1e-12 47.9 15.7 1.3e-12 47.7 15.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF998) MerC PF03203.14 BAD84556.1 - 9.7 6.7 13.1 2.5e+02 2.1 13.1 2.1 1 1 0 1 1 1 0 MerC mercury resistance protein ThiI PF02568.14 BAD84557.1 - 6.1e-66 221.8 0.0 1.5e-65 220.5 0.0 1.6 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.17 BAD84557.1 - 3.3e-27 95.4 7.0 3.3e-27 95.4 7.0 2.0 2 0 0 2 2 2 1 THUMP domain QueC PF06508.13 BAD84557.1 - 1.9e-08 34.1 0.0 0.00038 20.0 0.0 2.6 1 1 0 2 2 2 2 Queuosine biosynthesis protein QueC PAPS_reduct PF01507.19 BAD84557.1 - 3.2e-06 27.3 0.2 8.4e-06 25.9 0.0 1.7 2 0 0 2 2 2 1 Phosphoadenosine phosphosulfate reductase family tRNA_Me_trans PF03054.16 BAD84557.1 - 1e-05 24.6 0.0 7.8e-05 21.6 0.0 2.1 2 0 0 2 2 2 1 tRNA methyl transferase ATP_bind_3 PF01171.20 BAD84557.1 - 0.017 14.9 0.0 0.21 11.3 0.0 2.3 1 1 0 1 1 1 0 PP-loop family PrpR_N PF06506.11 BAD84557.1 - 0.042 13.4 0.0 0.092 12.3 0.0 1.5 1 0 0 1 1 1 0 Propionate catabolism activator Oxidored_nitro PF00148.19 BAD84557.1 - 0.044 12.5 0.2 1.2 7.8 0.0 2.1 1 1 1 2 2 2 0 Nitrogenase component 1 type Oxidoreductase HTH_ParB PF17762.1 BAD84557.1 - 0.12 12.1 0.4 29 4.6 0.0 3.3 4 0 0 4 4 4 0 HTH domain found in ParB protein Ndc1_Nup PF09531.10 BAD84558.1 - 0.0037 16.0 1.1 0.0039 15.9 1.1 1.0 1 0 0 1 1 1 1 Nucleoporin protein Ndc1-Nup Nitroreductase PF00881.24 BAD84559.1 - 1.1e-36 126.5 0.0 1.2e-36 126.3 0.0 1.0 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 BAD84559.1 - 8.8e-11 41.8 0.1 0.00027 20.6 0.0 3.2 2 1 1 3 3 3 3 Putative TM nitroreductase HpaB PF03241.13 BAD84559.1 - 0.14 11.3 0.2 0.93 8.5 0.0 2.2 3 0 0 3 3 3 0 4-hydroxyphenylacetate 3-hydroxylase C terminal HicA_toxin PF07927.12 BAD84560.1 - 3e-09 36.8 1.0 4.3e-09 36.3 1.0 1.3 1 0 0 1 1 1 1 HicA toxin of bacterial toxin-antitoxin, DUF1456 PF07308.13 BAD84560.1 - 0.039 14.3 0.1 0.089 13.1 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1456) LytR_C PF13399.6 BAD84560.1 - 0.066 14.2 0.0 0.089 13.8 0.0 1.2 1 0 0 1 1 1 0 LytR cell envelope-related transcriptional attenuator PHD_like PF12910.7 BAD84561.1 - 0.023 14.8 0.0 0.067 13.2 0.0 1.7 1 1 0 1 1 1 0 Antitoxin of toxin-antitoxin, RelE / RelB, TA system GnsAB_toxin PF08178.11 BAD84562.1 - 0.0029 17.5 0.7 0.0036 17.2 0.7 1.3 1 0 0 1 1 1 1 GnsA/GnsB toxin of bacterial toxin-antitoxin system VWA_N PF08399.11 BAD84562.1 - 0.0066 16.9 0.0 0.008 16.7 0.0 1.2 1 0 0 1 1 1 1 VWA N-terminal EnY2 PF10163.9 BAD84562.1 - 0.061 13.7 2.2 0.18 12.2 1.1 2.0 1 1 1 2 2 2 0 Transcription factor e(y)2 Vps52 PF04129.12 BAD84562.1 - 0.064 12.0 0.1 0.068 11.9 0.1 1.0 1 0 0 1 1 1 0 Vps52 / Sac2 family PIN PF01850.21 BAD84563.1 - 2.6e-10 40.8 0.5 6.7e-10 39.5 0.5 1.6 1 1 0 1 1 1 1 PIN domain Amdase PF17645.1 BAD84564.1 - 1.5e-34 119.5 0.0 1.8e-34 119.3 0.0 1.0 1 0 0 1 1 1 1 Arylmalonate decarboxylase Asp_Glu_race PF01177.22 BAD84564.1 - 6e-14 52.4 0.0 7.7e-14 52.1 0.0 1.2 1 0 0 1 1 1 1 Asp/Glu/Hydantoin racemase ADP_PFK_GK PF04587.15 BAD84565.1 - 2.8e-108 362.2 0.0 3.2e-108 362.1 0.0 1.0 1 0 0 1 1 1 1 ADP-specific Phosphofructokinase/Glucokinase conserved region DUF835 PF05763.12 BAD84566.1 - 5.9e-25 87.6 0.0 7.1e-25 87.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF835) DUF5603 PF18231.1 BAD84567.1 - 1e-50 170.4 4.1 2.2e-50 169.4 2.6 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF5603) ParBc PF02195.18 BAD84567.1 - 7.6e-10 39.0 0.0 2.1e-09 37.5 0.0 1.7 1 0 0 1 1 1 1 ParB-like nuclease domain DUF1015 PF06245.11 BAD84567.1 - 8.2e-05 21.6 0.0 0.18 10.6 0.1 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF1015) NMT1_3 PF16868.5 BAD84567.1 - 0.2 11.1 0.0 0.28 10.6 0.0 1.2 1 0 0 1 1 1 0 NMT1-like family DUF763 PF05559.11 BAD84568.1 - 9e-123 409.4 0.0 1.1e-122 409.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF763) DUF89 PF01937.19 BAD84569.1 - 1.3e-58 198.7 0.0 1.4e-58 198.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF89 Exonuc_VII_S PF02609.16 BAD84569.1 - 1.7 8.8 4.5 3.3 7.9 0.3 2.6 2 0 0 2 2 2 0 Exonuclease VII small subunit Phage_integr_3 PF16795.5 BAD84570.1 - 7e-61 204.8 0.0 1.3e-60 204.0 0.0 1.4 1 0 0 1 1 1 1 Archaeal phage integrase LapA_dom PF06305.11 BAD84571.1 - 0.1 12.5 2.8 0.075 12.9 0.8 1.7 2 0 0 2 2 2 0 Lipopolysaccharide assembly protein A domain RHH_1 PF01402.21 BAD84572.1 - 0.00054 19.8 0.0 0.00092 19.1 0.0 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family PSK_trans_fac PF07704.11 BAD84572.1 - 0.0046 17.7 0.1 0.0052 17.5 0.1 1.1 1 0 0 1 1 1 1 Rv0623-like transcription factor HicB PF05534.12 BAD84572.1 - 0.029 14.2 0.0 0.038 13.8 0.0 1.2 1 0 0 1 1 1 0 HicB family ParG PF09274.10 BAD84572.1 - 0.16 12.1 0.0 0.19 11.9 0.0 1.1 1 0 0 1 1 1 0 ParG CarbopepD_reg_2 PF13715.6 BAD84574.1 - 1.2e-05 25.2 3.3 8.3e-05 22.5 0.2 3.2 3 0 0 3 3 3 1 CarboxypepD_reg-like domain PEGA PF08308.11 BAD84574.1 - 0.00031 20.6 2.1 0.0026 17.6 0.1 3.3 3 0 0 3 3 3 1 PEGA domain DUF3244 PF11589.8 BAD84574.1 - 0.0012 18.9 0.2 0.016 15.3 0.1 2.9 2 0 0 2 2 2 1 Domain of unknown function (DUF3244) CarboxypepD_reg PF13620.6 BAD84574.1 - 0.0053 17.0 8.6 0.015 15.5 0.2 4.5 4 1 0 4 4 4 1 Carboxypeptidase regulatory-like domain Invasin_D3 PF09134.10 BAD84574.1 - 0.0095 16.2 9.8 0.49 10.7 0.1 3.6 3 1 0 3 3 3 2 Invasin, domain 3 CBM_35 PF16990.5 BAD84574.1 - 0.095 13.0 4.3 0.71 10.1 0.1 3.5 3 1 1 4 4 4 0 Carbohydrate binding module (family 35) DUF756 PF05506.12 BAD84574.1 - 0.1 13.5 0.1 0.7 10.9 0.1 2.4 1 0 0 1 1 1 0 Domain of unknown function (DUF756) PHA_gran_rgn PF09650.10 BAD84574.1 - 0.19 12.0 0.1 29 5.0 0.0 2.8 2 0 0 2 2 2 0 Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn) TrbC PF04956.13 BAD84575.1 - 1.1 9.5 7.1 0.11 12.7 1.8 2.0 2 0 0 2 2 2 0 TrbC/VIRB2 family DUF4396 PF14342.6 BAD84576.1 - 0.28 11.5 7.1 2.9 8.2 4.2 2.8 2 1 0 2 2 2 0 Domain of unknown function (DUF4396) DUF2583 PF10762.9 BAD84576.1 - 0.51 10.8 3.6 4 7.9 0.2 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF2583) DUF805 PF05656.14 BAD84577.1 - 0.023 15.1 1.2 0.026 14.9 1.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF805) Glyco_transf_22 PF03901.17 BAD84577.1 - 0.061 12.5 0.9 0.063 12.5 0.9 1.1 1 0 0 1 1 1 0 Alg9-like mannosyltransferase family ABC2_membrane_3 PF12698.7 BAD84577.1 - 0.19 10.8 6.8 0.24 10.5 6.8 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF973 PF06157.11 BAD84577.1 - 0.29 10.1 2.8 0.29 10.1 2.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF973) DUF1573 PF07610.11 BAD84579.1 - 0.0098 15.9 3.4 2.4 8.2 0.2 2.9 3 1 0 3 3 3 2 Protein of unknown function (DUF1573) CBM39 PF15886.5 BAD84579.1 - 0.052 13.4 0.8 0.11 12.4 0.4 1.9 1 1 0 1 1 1 0 Carbohydrate binding domain (family 32) PepSY PF03413.19 BAD84580.1 - 0.05 14.2 0.3 0.091 13.3 0.3 1.4 1 0 0 1 1 1 0 Peptidase propeptide and YPEB domain ZapB PF06005.12 BAD84582.1 - 3.5e-05 24.2 27.1 0.0012 19.2 12.3 2.3 2 0 0 2 2 2 2 Cell division protein ZapB HALZ PF02183.18 BAD84582.1 - 0.00011 22.4 23.4 0.04 14.1 8.5 3.9 2 2 2 4 4 4 2 Homeobox associated leucine zipper DUF484 PF04340.12 BAD84582.1 - 0.00015 21.6 3.1 0.00026 20.8 3.1 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF484 GAS PF13851.6 BAD84582.1 - 0.00035 20.0 21.0 0.00052 19.4 21.0 1.2 1 0 0 1 1 1 1 Growth-arrest specific micro-tubule binding bZIP_1 PF00170.21 BAD84582.1 - 0.00037 20.5 23.6 0.046 13.8 9.6 3.6 1 1 2 3 3 3 2 bZIP transcription factor RasGAP_C PF03836.15 BAD84582.1 - 0.00079 19.6 6.8 0.00079 19.6 6.8 2.4 2 1 1 3 3 2 1 RasGAP C-terminus KASH_CCD PF14662.6 BAD84582.1 - 0.00088 19.1 23.3 0.0023 17.8 23.3 1.6 1 1 0 1 1 1 1 Coiled-coil region of CCDC155 or KASH DivIC PF04977.15 BAD84582.1 - 0.001 18.8 27.6 0.01 15.6 2.9 4.1 2 1 2 4 4 4 2 Septum formation initiator Macoilin PF09726.9 BAD84582.1 - 0.0017 17.0 10.9 0.0021 16.7 10.9 1.1 1 0 0 1 1 1 1 Macoilin family Cnn_1N PF07989.11 BAD84582.1 - 0.0035 17.5 21.3 0.17 12.1 13.3 3.1 1 1 2 3 3 3 2 Centrosomin N-terminal motif 1 DUF4515 PF14988.6 BAD84582.1 - 0.0036 17.2 23.8 0.29 10.9 7.4 2.5 1 1 1 2 2 2 2 Domain of unknown function (DUF4515) FapA PF03961.13 BAD84582.1 - 0.0043 15.7 6.5 0.0053 15.4 6.5 1.3 1 0 0 1 1 1 1 Flagellar Assembly Protein A YabA PF06156.13 BAD84582.1 - 0.013 16.2 18.8 0.21 12.2 3.7 2.3 1 1 1 2 2 2 0 Initiation control protein YabA Atg14 PF10186.9 BAD84582.1 - 0.015 14.4 15.4 0.023 13.8 15.4 1.3 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 TSC22 PF01166.18 BAD84582.1 - 0.016 15.5 5.7 0.016 15.5 5.7 3.1 1 1 2 3 3 3 0 TSC-22/dip/bun family Leu_zip PF15294.6 BAD84582.1 - 0.018 14.6 18.4 0.031 13.8 18.4 1.3 1 0 0 1 1 1 0 Leucine zipper GIT_CC PF16559.5 BAD84582.1 - 0.019 14.8 7.9 0.019 14.8 7.9 2.5 1 1 1 2 2 2 0 GIT coiled-coil Rho guanine nucleotide exchange factor Cep57_CLD PF14073.6 BAD84582.1 - 0.024 14.7 15.5 0.044 13.8 15.5 1.3 1 0 0 1 1 1 0 Centrosome localisation domain of Cep57 Shugoshin_N PF07558.11 BAD84582.1 - 0.027 14.3 19.2 0.11 12.4 5.0 3.4 3 0 0 3 3 3 0 Shugoshin N-terminal coiled-coil region STAT_alpha PF01017.20 BAD84582.1 - 0.04 13.8 13.0 0.22 11.4 2.1 2.2 2 0 0 2 2 2 0 STAT protein, all-alpha domain UPF0242 PF06785.11 BAD84582.1 - 0.044 13.9 16.4 0.098 12.7 16.4 1.6 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus Ax_dynein_light PF10211.9 BAD84582.1 - 0.047 13.6 20.0 0.049 13.6 7.3 2.3 1 1 1 2 2 2 0 Axonemal dynein light chain CENP-F_leu_zip PF10473.9 BAD84582.1 - 0.063 13.3 21.1 0.42 10.6 6.9 2.2 1 1 1 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Jnk-SapK_ap_N PF09744.9 BAD84582.1 - 0.064 13.5 17.4 0.14 12.4 17.4 1.5 1 1 0 1 1 1 0 JNK_SAPK-associated protein-1 Exonuc_VII_L PF02601.15 BAD84582.1 - 0.07 12.7 6.4 0.083 12.5 6.4 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit CorA PF01544.18 BAD84582.1 - 0.081 12.2 7.1 0.16 11.3 7.1 1.5 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein V_ATPase_I PF01496.19 BAD84582.1 - 0.12 10.2 6.1 0.21 9.5 6.1 1.3 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family NRBF2 PF08961.10 BAD84582.1 - 0.13 11.9 14.8 0.66 9.6 6.3 2.3 1 1 1 2 2 2 0 Nuclear receptor-binding factor 2, autophagy regulator DUF2207 PF09972.9 BAD84582.1 - 0.15 10.8 2.9 0.23 10.2 2.9 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) MAD PF05557.13 BAD84582.1 - 0.16 10.3 18.4 0.22 9.8 18.4 1.1 1 0 0 1 1 1 0 Mitotic checkpoint protein Nup54 PF13874.6 BAD84582.1 - 0.18 11.9 16.4 0.15 12.2 13.0 2.1 1 1 1 2 2 2 0 Nucleoporin complex subunit 54 DUF3450 PF11932.8 BAD84582.1 - 0.25 10.6 20.2 1.6 7.9 5.3 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) RRM_3 PF08777.11 BAD84582.1 - 0.3 11.2 4.6 0.12 12.4 0.4 2.2 1 1 2 3 3 3 0 RNA binding motif Spc24 PF08286.11 BAD84582.1 - 0.31 11.3 20.9 1.1 9.6 9.3 2.4 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 DUF4140 PF13600.6 BAD84582.1 - 0.32 11.5 8.2 1 9.8 1.9 2.6 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) LMBR1 PF04791.16 BAD84582.1 - 0.32 9.8 5.2 0.49 9.3 5.2 1.3 1 0 0 1 1 1 0 LMBR1-like membrane protein Spc7 PF08317.11 BAD84582.1 - 0.34 9.8 19.5 0.54 9.1 19.5 1.3 1 0 0 1 1 1 0 Spc7 kinetochore protein Borrelia_REV PF03978.13 BAD84582.1 - 0.35 10.8 11.1 0.62 10.0 10.4 1.9 1 1 0 1 1 1 0 Borrelia burgdorferi REV protein Rho_Binding PF08912.11 BAD84582.1 - 0.43 11.4 25.8 0.22 12.4 5.4 3.7 1 1 3 4 4 4 0 Rho Binding DUF2730 PF10805.8 BAD84582.1 - 0.47 10.6 6.4 0.46 10.6 4.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2730) Rootletin PF15035.6 BAD84582.1 - 0.48 10.4 19.8 0.17 11.9 8.4 2.2 1 1 1 2 2 2 0 Ciliary rootlet component, centrosome cohesion Cep57_MT_bd PF06657.13 BAD84582.1 - 0.51 10.8 9.4 0.22 12.0 2.9 2.4 1 1 1 2 2 2 0 Centrosome microtubule-binding domain of Cep57 CENP-H PF05837.12 BAD84582.1 - 0.52 10.7 22.7 2.8 8.4 11.4 2.6 1 1 1 2 2 2 0 Centromere protein H (CENP-H) TMCO5 PF14992.6 BAD84582.1 - 0.58 9.7 19.1 2.2 7.8 19.1 1.8 1 1 1 2 2 2 0 TMCO5 family DUF2935 PF11155.8 BAD84582.1 - 0.58 10.5 8.8 1.2 9.5 7.4 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF2935) Prominin PF05478.11 BAD84582.1 - 0.6 8.0 9.6 0.82 7.6 9.6 1.3 1 0 0 1 1 1 0 Prominin FlaC_arch PF05377.11 BAD84582.1 - 0.62 10.5 10.2 3 8.3 4.9 2.8 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) DHR10 PF18595.1 BAD84582.1 - 1 9.4 23.0 30 4.7 11.5 2.2 1 1 0 1 1 1 0 Designed helical repeat protein 10 domain TMF_TATA_bd PF12325.8 BAD84582.1 - 1.1 9.5 18.8 2 8.6 6.6 2.3 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding CotJB PF12652.7 BAD84582.1 - 1.3 9.3 4.1 2.1 8.6 0.0 2.8 2 1 1 3 3 3 0 CotJB protein Fmp27_WPPW PF10359.9 BAD84582.1 - 1.4 7.7 11.6 2.3 7.0 11.6 1.3 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain bZIP_Maf PF03131.17 BAD84582.1 - 1.9 9.1 14.3 9.1 6.9 4.3 3.2 2 1 1 3 3 3 0 bZIP Maf transcription factor bZIP_2 PF07716.15 BAD84582.1 - 2 8.6 34.4 2.2 8.4 1.6 4.6 3 1 2 5 5 4 0 Basic region leucine zipper Nucleoporin_FG2 PF15967.5 BAD84582.1 - 2.5 6.6 4.7 3.2 6.2 4.7 1.1 1 0 0 1 1 1 0 Nucleoporin FG repeated region kleA_kleC PF17383.2 BAD84582.1 - 2.6 8.4 7.7 3.8 7.9 1.6 2.7 1 1 0 2 2 2 0 Uncharacterized KorC regulated protein A TolA_bind_tri PF16331.5 BAD84582.1 - 3 8.0 16.8 0.89 9.7 11.2 2.5 1 1 1 2 2 2 0 TolA binding protein trimerisation Herpes_BLRF2 PF05812.12 BAD84582.1 - 3 8.0 16.3 0.36 11.0 2.6 3.0 1 1 2 3 3 3 0 Herpesvirus BLRF2 protein MctB PF11382.8 BAD84582.1 - 3.3 7.3 11.2 8.7 6.0 0.9 2.5 1 1 1 2 2 2 0 Copper transport outer membrane protein, MctB DivIVA PF05103.13 BAD84582.1 - 3.3 7.8 18.8 1.2 9.2 4.6 3.2 1 1 2 3 3 3 0 DivIVA protein Ribosomal_L29 PF00831.23 BAD84582.1 - 3.5 7.7 19.2 2.5 8.1 1.2 3.6 1 1 2 3 3 3 0 Ribosomal L29 protein NYD-SP28_assoc PF14775.6 BAD84582.1 - 3.6 7.8 24.8 6.2 7.0 0.3 4.3 3 1 1 4 4 4 0 Sperm tail C-terminal domain DUF724 PF05266.14 BAD84582.1 - 4.2 7.2 13.5 7.3 6.4 13.5 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF724) APG6_N PF17675.1 BAD84582.1 - 5 7.6 25.6 27 5.3 20.9 2.8 1 1 1 2 2 2 0 Apg6 coiled-coil region TMF_DNA_bd PF12329.8 BAD84582.1 - 5.2 7.1 25.5 2.1 8.4 12.7 2.8 1 1 2 3 3 3 0 TATA element modulatory factor 1 DNA binding GrpE PF01025.19 BAD84582.1 - 6.7 6.3 20.6 1.3 8.7 5.3 2.4 1 1 1 2 2 2 0 GrpE MCC-bdg_PDZ PF10506.9 BAD84582.1 - 6.8 6.8 14.6 12 6.0 9.8 3.0 2 1 1 3 3 2 0 PDZ domain of MCC-2 bdg protein for Usher syndrome PRKG1_interact PF15898.5 BAD84582.1 - 7.4 7.5 20.0 5.3 8.0 6.7 2.4 1 1 1 2 2 2 0 cGMP-dependent protein kinase interacting domain Fez1 PF06818.15 BAD84582.1 - 7.4 7.0 20.0 20 5.5 17.6 2.0 1 1 1 2 2 2 0 Fez1 TMPIT PF07851.13 BAD84582.1 - 8.9 5.4 16.8 53 2.9 16.7 1.9 1 1 0 1 1 1 0 TMPIT-like protein ADIP PF11559.8 BAD84582.1 - 9.1 6.4 24.1 4 7.5 19.5 2.1 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding Uso1_p115_C PF04871.13 BAD84582.1 - 9.6 6.6 25.5 8.7 6.7 8.9 2.3 1 1 1 2 2 2 0 Uso1 / p115 like vesicle tethering protein, C terminal region Cep57_CLD_2 PF14197.6 BAD84582.1 - 9.9 6.3 18.9 10 6.3 8.5 2.4 1 1 1 2 2 2 0 Centrosome localisation domain of PPC89 DUF87 PF01935.17 BAD84583.1 - 7.9e-11 42.5 0.0 5e-10 39.9 0.0 2.0 1 1 0 1 1 1 1 Helicase HerA, central domain AAA_22 PF13401.6 BAD84583.1 - 0.00011 22.5 0.0 0.0011 19.3 0.0 2.2 2 1 0 2 2 2 1 AAA domain NACHT PF05729.12 BAD84583.1 - 0.00072 19.5 0.0 0.0012 18.8 0.0 1.3 1 0 0 1 1 1 1 NACHT domain AAA_18 PF13238.6 BAD84583.1 - 0.0027 18.2 0.0 0.014 15.9 0.0 2.0 2 0 0 2 2 2 1 AAA domain ATPase_2 PF01637.18 BAD84583.1 - 0.004 17.1 0.5 0.099 12.5 0.1 2.2 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea TrwB_AAD_bind PF10412.9 BAD84583.1 - 0.0041 16.1 0.0 0.055 12.4 0.0 2.1 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain AAA_5 PF07728.14 BAD84583.1 - 0.0047 16.9 0.0 0.036 14.1 0.0 2.2 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_23 PF13476.6 BAD84583.1 - 0.0074 16.8 0.0 0.014 15.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 BAD84583.1 - 0.0089 16.5 0.0 1.6 9.2 0.0 2.5 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) FtsK_SpoIIIE PF01580.18 BAD84583.1 - 0.02 14.2 0.0 0.053 12.9 0.0 1.6 1 0 0 1 1 1 0 FtsK/SpoIIIE family DUF815 PF05673.13 BAD84583.1 - 0.036 13.2 0.0 0.098 11.8 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF815) ABC_tran PF00005.27 BAD84583.1 - 0.039 14.5 0.0 0.075 13.5 0.0 1.5 1 0 0 1 1 1 0 ABC transporter AAA_16 PF13191.6 BAD84583.1 - 0.049 14.0 0.0 0.38 11.1 0.0 2.1 2 1 0 2 2 2 0 AAA ATPase domain AAA_24 PF13479.6 BAD84583.1 - 0.093 12.4 0.0 0.25 11.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 BAD84583.1 - 0.093 13.1 0.0 0.24 11.8 0.0 1.7 1 0 0 1 1 1 0 RNA helicase TsaE PF02367.17 BAD84583.1 - 0.093 12.7 0.1 0.36 10.8 0.0 2.0 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ResIII PF04851.15 BAD84583.1 - 0.11 12.5 0.0 0.21 11.6 0.0 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit MPP6 PF10175.9 BAD84585.1 - 0.011 16.2 1.1 0.013 16.0 1.1 1.0 1 0 0 1 1 1 0 M-phase phosphoprotein 6 DUF1269 PF06897.12 BAD84586.1 - 0.0016 18.7 1.1 0.0042 17.4 1.1 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF1269) Tetraspanin PF00335.20 BAD84586.1 - 0.0092 15.7 1.2 0.013 15.2 1.2 1.2 1 0 0 1 1 1 1 Tetraspanin family Borrelia_P13 PF05628.12 BAD84586.1 - 0.091 12.7 0.8 0.17 11.8 0.8 1.4 1 0 0 1 1 1 0 Borrelia membrane protein P13 OppC_N PF12911.7 BAD84586.1 - 0.22 11.5 1.3 0.44 10.6 1.3 1.4 1 0 0 1 1 1 0 N-terminal TM domain of oligopeptide transport permease C YobH PF13996.6 BAD84586.1 - 0.3 11.1 1.4 0.52 10.4 1.4 1.3 1 0 0 1 1 1 0 YobH-like protein Ribosomal_L38e PF01781.18 BAD84587.1 - 0.022 14.8 0.0 0.051 13.7 0.0 1.6 1 0 0 1 1 1 0 Ribosomal L38e protein family DUF553 PF04473.12 BAD84587.1 - 0.085 12.4 0.0 0.2 11.2 0.0 1.6 1 0 0 1 1 1 0 Transglutaminase-like domain CRISPR_Cas2 PF09827.9 BAD84589.1 - 0.044 14.0 0.4 0.33 11.1 0.0 2.3 1 1 0 2 2 2 0 CRISPR associated protein Cas2 ZT_dimer PF16916.5 BAD84589.1 - 0.17 12.0 2.0 3.1 8.0 0.0 2.8 3 0 0 3 3 3 0 Dimerisation domain of Zinc Transporter DUF3972 PF13118.6 BAD84590.1 - 0.019 15.4 0.5 0.035 14.6 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3972) UPF0160 PF03690.13 BAD84590.1 - 0.041 13.5 0.0 0.041 13.5 0.0 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0160) STAT1_TAZ2bind PF12162.8 BAD84590.1 - 0.16 11.6 0.3 0.36 10.4 0.3 1.6 1 0 0 1 1 1 0 STAT1 TAZ2 binding domain MazE_antitoxin PF04014.18 BAD84591.1 - 0.00048 20.0 0.1 0.028 14.4 0.1 2.3 2 0 0 2 2 2 2 Antidote-toxin recognition MazE, bacterial antitoxin PrlF_antitoxin PF15937.5 BAD84591.1 - 0.14 12.6 0.0 3.8 8.0 0.0 2.2 2 0 0 2 2 2 0 prlF antitoxin for toxin YhaV_toxin MTABC_N PF16185.5 BAD84592.1 - 0.058 12.9 3.3 0.081 12.4 3.3 1.2 1 0 0 1 1 1 0 Mitochondrial ABC-transporter N-terminal five TM region UPF0242 PF06785.11 BAD84592.1 - 1.2 9.1 4.5 1.7 8.7 4.5 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus DUF2070 PF09843.9 BAD84592.1 - 1.3 7.2 7.2 1.4 7.1 7.2 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) DUF4131 PF13567.6 BAD84592.1 - 6.6 6.3 8.9 11 5.7 3.5 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) HbrB PF08539.11 BAD84593.1 - 0.072 13.1 0.0 0.15 12.1 0.0 1.5 1 0 0 1 1 1 0 HbrB-like MazE_antitoxin PF04014.18 BAD84594.1 - 0.00013 21.8 3.7 0.023 14.7 0.3 2.6 2 1 0 2 2 2 2 Antidote-toxin recognition MazE, bacterial antitoxin PrlF_antitoxin PF15937.5 BAD84594.1 - 0.0065 16.9 0.2 0.54 10.7 0.0 2.2 2 0 0 2 2 2 2 prlF antitoxin for toxin YhaV_toxin Thump_like PF18096.1 BAD84594.1 - 0.034 14.1 0.2 0.057 13.4 0.2 1.6 1 1 0 1 1 1 0 THUMP domain-like MazE_antitoxin PF04014.18 BAD84595.1 - 1.3e-09 37.7 2.2 0.00017 21.4 0.1 2.5 3 0 0 3 3 3 2 Antidote-toxin recognition MazE, bacterial antitoxin B3 PF02362.21 BAD84595.1 - 0.012 15.5 0.0 3.4 7.6 0.0 2.3 2 1 0 2 2 2 0 B3 DNA binding domain PEX-2N PF09263.10 BAD84595.1 - 0.045 14.1 0.0 0.83 10.0 0.0 2.2 2 0 0 2 2 2 0 Peroxisome biogenesis factor 1, N-terminal Neurensin PF14927.6 BAD84596.1 - 0.2 11.4 0.0 0.23 11.2 0.0 1.1 1 0 0 1 1 1 0 Neurensin Acetyltransf_1 PF00583.25 BAD84597.1 - 0.0076 16.5 0.0 0.016 15.5 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 BAD84597.1 - 0.0077 16.6 0.2 0.011 16.1 0.2 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 BAD84597.1 - 0.055 13.4 0.1 0.16 11.9 0.1 1.8 1 1 1 2 2 2 0 Acetyltransferase (GNAT) domain MazE_antitoxin PF04014.18 BAD84598.1 - 5.2e-08 32.6 1.8 7.4e-05 22.6 0.9 2.7 2 1 0 2 2 2 2 Antidote-toxin recognition MazE, bacterial antitoxin MraZ PF02381.18 BAD84598.1 - 2.2e-05 24.4 0.0 0.00051 20.0 0.0 2.1 2 0 0 2 2 2 1 MraZ protein, putative antitoxin-like PrlF_antitoxin PF15937.5 BAD84598.1 - 0.011 16.2 0.2 0.046 14.2 0.1 2.2 1 1 1 2 2 2 0 prlF antitoxin for toxin YhaV_toxin UFD1 PF03152.14 BAD84598.1 - 0.04 13.4 0.0 0.52 9.8 0.0 2.1 1 1 1 2 2 2 0 Ubiquitin fusion degradation protein UFD1 DUF2570 PF10828.8 BAD84599.1 - 8.2e-05 22.4 1.5 0.00017 21.3 1.5 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF2570) RSS_P20 PF11757.8 BAD84599.1 - 0.033 14.6 1.1 0.13 12.7 0.1 2.3 2 0 0 2 2 2 0 Suppressor of RNA silencing P21-like N-terminal domain DUF4111 PF13427.6 BAD84599.1 - 0.036 14.2 0.1 0.14 12.3 0.1 2.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4111) Ribosomal_L22 PF00237.19 BAD84599.1 - 0.13 12.5 0.3 0.89 9.8 0.0 2.3 2 0 0 2 2 2 0 Ribosomal protein L22p/L17e FAM76 PF16046.5 BAD84599.1 - 0.23 10.8 2.9 0.34 10.2 2.9 1.2 1 0 0 1 1 1 0 FAM76 protein Neuropep_like PF15161.6 BAD84600.1 - 0.098 12.3 0.6 0.28 10.9 0.0 1.9 2 0 0 2 2 2 0 Neuropeptide-like LAGLIDADG_WhiA PF14527.6 BAD84600.1 - 0.11 12.5 0.1 4.2 7.5 0.1 2.5 1 1 1 2 2 2 0 WhiA LAGLIDADG-like domain Y_Y_Y PF07495.13 BAD84601.1 - 0.0094 15.9 0.2 0.015 15.2 0.2 1.4 1 1 0 1 1 1 1 Y_Y_Y domain Rad60-SLD PF11976.8 BAD84601.1 - 0.021 14.6 0.1 0.039 13.8 0.1 1.4 1 0 0 1 1 1 0 Ubiquitin-2 like Rad60 SUMO-like AF2331-like PF14556.6 BAD84602.1 - 0.0025 18.4 1.9 0.022 15.3 1.1 2.4 1 1 1 2 2 2 2 AF2331-like DprA_WH PF17782.1 BAD84603.1 - 1.5e-05 25.0 0.0 2e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 DprA winged helix domain TrmB PF01978.19 BAD84603.1 - 0.0011 18.8 0.0 0.0014 18.5 0.0 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 BAD84603.1 - 0.025 14.4 0.0 0.03 14.1 0.0 1.2 1 0 0 1 1 1 0 IclR helix-turn-helix domain z-alpha PF02295.17 BAD84603.1 - 0.06 13.4 0.0 0.074 13.1 0.0 1.1 1 0 0 1 1 1 0 Adenosine deaminase z-alpha domain HTH_24 PF13412.6 BAD84603.1 - 0.076 12.6 0.0 0.09 12.4 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_9 PF08221.11 BAD84603.1 - 0.076 13.1 0.0 0.085 13.0 0.0 1.2 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain MarR_2 PF12802.7 BAD84603.1 - 0.083 12.8 0.0 0.094 12.6 0.0 1.2 1 0 0 1 1 1 0 MarR family PIN_2 PF10130.9 BAD84603.1 - 0.099 12.9 0.0 0.1 12.9 0.0 1.0 1 0 0 1 1 1 0 PIN domain HTH_20 PF12840.7 BAD84603.1 - 0.1 12.7 0.0 0.12 12.4 0.0 1.1 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.20 BAD84603.1 - 0.14 12.0 0.0 0.17 11.8 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family LexA_DNA_bind PF01726.16 BAD84603.1 - 0.15 11.8 0.0 0.18 11.6 0.0 1.2 1 0 0 1 1 1 0 LexA DNA binding domain DUF3754 PF12576.8 BAD84606.1 - 0.12 12.3 0.3 0.14 12.1 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3754) DUF4231 PF14015.6 BAD84606.1 - 0.12 12.8 0.3 0.18 12.3 0.3 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF4231) Chor_lyase PF04345.13 BAD84607.1 - 0.14 11.8 0.0 0.15 11.7 0.0 1.1 1 0 0 1 1 1 0 Chorismate lyase Pam16 PF03656.13 BAD84608.1 - 0.0068 16.4 0.0 0.0093 16.0 0.0 1.1 1 0 0 1 1 1 1 Pam16 CcdA PF07362.12 BAD84610.1 - 0.064 13.7 0.0 0.1 13.1 0.0 1.2 1 0 0 1 1 1 0 Post-segregation antitoxin CcdA RNA_Me_trans PF04252.13 BAD84611.1 - 3.5e-05 23.5 0.0 7.1e-05 22.5 0.0 1.5 1 0 0 1 1 1 1 Predicted SAM-dependent RNA methyltransferase FeoC PF09012.10 BAD84611.1 - 0.0035 17.4 0.0 0.0084 16.2 0.0 1.5 1 0 0 1 1 1 1 FeoC like transcriptional regulator tRNA_m1G_MT PF01746.21 BAD84611.1 - 0.041 13.6 0.0 0.092 12.4 0.0 1.6 1 0 0 1 1 1 0 tRNA (Guanine-1)-methyltransferase Peptidase_S9 PF00326.21 BAD84612.1 - 4.4e-57 193.0 0.0 6.1e-57 192.5 0.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family Peptidase_S9_N PF02897.15 BAD84612.1 - 3.9e-20 72.1 0.0 4.2e-19 68.6 0.0 2.1 1 1 0 1 1 1 1 Prolyl oligopeptidase, N-terminal beta-propeller domain Hydrolase_4 PF12146.8 BAD84612.1 - 0.0032 16.8 0.0 0.023 13.9 0.0 2.2 3 0 0 3 3 3 1 Serine aminopeptidase, S33 Peptidase_S15 PF02129.18 BAD84612.1 - 0.01 15.5 0.0 1.5 8.3 0.0 2.4 1 1 1 2 2 2 0 X-Pro dipeptidyl-peptidase (S15 family) RibD_C PF01872.17 BAD84613.1 - 1.2e-35 123.2 0.0 1.7e-35 122.7 0.0 1.2 1 0 0 1 1 1 1 RibD C-terminal domain dCMP_cyt_deam_1 PF00383.23 BAD84613.1 - 3e-26 91.3 0.0 5.1e-26 90.5 0.0 1.4 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region MafB19-deam PF14437.6 BAD84613.1 - 7.4e-17 61.4 0.0 1.2e-16 60.7 0.0 1.3 1 0 0 1 1 1 1 MafB19-like deaminase Inv-AAD PF18785.1 BAD84613.1 - 1.4e-06 28.2 0.0 3.2e-06 27.0 0.0 1.7 1 0 0 1 1 1 1 Invertebrate-AID/APOBEC-deaminase APOBEC_N PF08210.11 BAD84613.1 - 0.0056 16.6 0.0 0.026 14.4 0.0 1.9 1 1 0 1 1 1 1 APOBEC-like N-terminal domain Lum_binding PF00677.17 BAD84614.1 - 1.7e-38 130.5 0.1 5.7e-22 77.5 0.0 2.1 2 0 0 2 2 2 2 Lumazine binding domain GTP_cyclohydro2 PF00925.20 BAD84617.1 - 3.5e-68 228.3 0.0 5.5e-68 227.7 0.0 1.2 1 0 0 1 1 1 1 GTP cyclohydrolase II DHBP_synthase PF00926.19 BAD84617.1 - 6.5e-42 143.2 0.0 1.1e-41 142.5 0.0 1.3 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase DUF4224 PF13986.6 BAD84617.1 - 0.012 15.5 0.0 0.1 12.5 0.0 2.5 3 0 0 3 3 3 0 Domain of unknown function (DUF4224) NTP_transf_3 PF12804.7 BAD84617.1 - 0.053 13.9 0.0 0.11 12.9 0.0 1.5 1 0 0 1 1 1 0 MobA-like NTP transferase domain DMRL_synthase PF00885.19 BAD84618.1 - 8.4e-54 181.2 0.2 9.6e-54 181.0 0.2 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase IMP_cyclohyd PF07826.11 BAD84619.1 - 3.3e-53 180.2 0.0 3.7e-53 180.0 0.0 1.0 1 0 0 1 1 1 1 IMP cyclohydrolase-like protein DUF1297 PF06973.12 BAD84620.1 - 9.1e-42 142.7 0.0 1.3e-41 142.2 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.12 BAD84620.1 - 7.7e-33 113.1 0.0 1.4e-32 112.2 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) SAICAR_synt PF01259.18 BAD84621.1 - 3e-34 118.8 0.0 9.5e-34 117.1 0.0 1.7 1 1 0 1 1 1 1 SAICAR synthetase ThiC_Rad_SAM PF01964.18 BAD84622.1 - 1.2e-182 607.4 0.2 1.3e-182 607.2 0.2 1.0 1 0 0 1 1 1 1 Radical SAM ThiC family Thi4 PF01946.17 BAD84623.1 - 1.2e-78 263.6 1.1 1.4e-78 263.4 1.1 1.0 1 0 0 1 1 1 1 Thi4 family DAO PF01266.24 BAD84623.1 - 1.2e-11 44.8 5.9 1e-05 25.3 0.0 2.1 1 1 1 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 BAD84623.1 - 5.6e-10 38.9 7.4 0.00015 21.0 2.4 3.1 3 0 0 3 3 3 2 FAD binding domain FAD_oxidored PF12831.7 BAD84623.1 - 9.5e-09 35.1 2.2 1.3e-08 34.7 2.2 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 BAD84623.1 - 3.2e-08 33.7 0.7 1.2e-07 31.8 1.0 1.9 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 BAD84623.1 - 7.7e-05 22.1 0.8 0.0004 19.7 0.6 1.9 2 0 0 2 2 2 1 FAD binding domain HI0933_like PF03486.14 BAD84623.1 - 8.9e-05 21.4 2.5 0.00012 21.0 2.3 1.4 1 1 0 1 1 1 1 HI0933-like protein Pyr_redox_2 PF07992.14 BAD84623.1 - 0.00018 20.8 2.0 0.00032 20.0 1.7 1.5 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 BAD84623.1 - 0.009 14.9 2.0 0.62 8.9 0.0 2.1 2 0 0 2 2 2 2 Tryptophan halogenase GIDA PF01134.22 BAD84623.1 - 0.015 14.4 2.4 0.015 14.4 2.4 1.5 2 0 0 2 2 2 0 Glucose inhibited division protein A NAD_binding_9 PF13454.6 BAD84623.1 - 0.019 15.0 0.8 0.12 12.3 0.9 2.2 2 0 0 2 2 2 0 FAD-NAD(P)-binding Pyr_redox PF00070.27 BAD84623.1 - 0.091 13.3 2.6 0.15 12.7 1.1 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 BAD84623.1 - 0.093 12.0 3.2 0.25 10.6 2.9 1.8 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Phos_pyr_kin PF08543.12 BAD84624.1 - 6.7e-70 235.3 0.0 9.2e-70 234.8 0.0 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase ThiP_synth PF10120.9 BAD84624.1 - 1e-53 181.3 0.1 3.5e-53 179.6 0.2 1.8 2 0 0 2 2 2 1 Thiamine-phosphate synthase PfkB PF00294.24 BAD84624.1 - 0.0001 21.7 0.1 0.00042 19.7 0.1 1.8 2 0 0 2 2 2 1 pfkB family carbohydrate kinase Carb_kinase PF01256.17 BAD84624.1 - 0.002 17.6 0.1 0.003 17.1 0.1 1.3 1 0 0 1 1 1 1 Carbohydrate kinase ABC_tran PF00005.27 BAD84625.1 - 9.5e-19 68.3 0.0 2.5e-18 66.9 0.0 1.8 1 1 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 BAD84625.1 - 1.5e-10 41.4 0.1 0.00012 22.1 0.0 2.6 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 BAD84625.1 - 1.8e-06 28.3 0.0 4.7e-06 26.9 0.0 1.7 2 0 0 2 2 1 1 AAA domain Acetyltransf_1 PF00583.25 BAD84625.1 - 5.7e-05 23.3 0.1 0.00025 21.3 0.1 2.2 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family SMC_N PF02463.19 BAD84625.1 - 0.00014 21.4 0.0 0.0055 16.2 0.0 1.8 1 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain Acetyltransf_7 PF13508.7 BAD84625.1 - 0.00028 21.2 0.0 0.00063 20.1 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 BAD84625.1 - 0.0013 18.6 0.0 0.0029 17.5 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain AAA_16 PF13191.6 BAD84625.1 - 0.002 18.5 0.1 0.0049 17.3 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.6 BAD84625.1 - 0.0023 17.6 0.3 0.007 16.0 0.3 1.8 1 1 0 1 1 1 1 AAA domain FR47 PF08445.10 BAD84625.1 - 0.0047 16.9 0.2 0.37 10.8 0.0 2.8 2 1 0 2 2 2 1 FR47-like protein RsgA_GTPase PF03193.16 BAD84625.1 - 0.0072 16.3 0.0 0.015 15.2 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_23 PF13476.6 BAD84625.1 - 0.01 16.3 0.1 0.032 14.7 0.0 1.8 2 0 0 2 2 1 0 AAA domain GNAT_acetyltr_2 PF13718.6 BAD84625.1 - 0.02 14.3 0.0 0.033 13.6 0.0 1.3 1 0 0 1 1 1 0 GNAT acetyltransferase 2 AAA_30 PF13604.6 BAD84625.1 - 0.02 14.6 0.1 0.51 10.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 BAD84625.1 - 0.03 14.2 0.4 0.18 11.7 0.1 2.1 2 0 0 2 2 2 0 NACHT domain TPR_8 PF13181.6 BAD84625.1 - 0.035 14.3 0.2 9.8 6.7 0.0 2.9 2 0 0 2 2 2 0 Tetratricopeptide repeat AAA_29 PF13555.6 BAD84625.1 - 0.035 13.8 0.0 0.087 12.6 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain MMR_HSR1 PF01926.23 BAD84625.1 - 0.056 13.5 0.1 0.11 12.6 0.1 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase TackOD1 PF18551.1 BAD84625.1 - 0.072 12.8 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 AAA_33 PF13671.6 BAD84625.1 - 0.074 13.2 0.1 0.26 11.4 0.1 2.0 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 BAD84625.1 - 0.088 13.0 0.3 0.35 11.1 0.1 2.1 2 0 0 2 2 2 0 AAA domain Zn-ribbon_8 PF09723.10 BAD84625.1 - 0.098 12.8 0.1 0.19 11.9 0.1 1.5 1 0 0 1 1 1 0 Zinc ribbon domain DUF3584 PF12128.8 BAD84625.1 - 0.21 9.0 0.0 0.32 8.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DUF4771 PF15995.5 BAD84625.1 - 0.5 10.6 2.4 17 5.6 0.2 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4771) Phage_sheath_1C PF17482.2 BAD84627.1 - 0.061 13.3 0.0 2.2 8.3 0.0 2.5 2 0 0 2 2 2 0 Phage tail sheath C-terminal domain CPBP PF02517.16 BAD84628.1 - 4.6e-09 36.5 5.7 1.1e-08 35.3 5.7 1.9 1 1 0 1 1 1 1 CPBP intramembrane metalloprotease PufQ PF05398.11 BAD84628.1 - 0.94 9.7 3.1 32 4.8 0.0 2.4 2 0 0 2 2 2 0 PufQ cytochrome subunit FKBP_C PF00254.28 BAD84630.1 - 6.5e-16 58.4 0.0 1.7e-15 57.1 0.0 1.8 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase FKBP26_C PF18046.1 BAD84630.1 - 5.9e-05 23.1 0.3 0.00017 21.6 0.3 1.7 1 0 0 1 1 1 1 FKBP26_C-terminal SDA1 PF05285.12 BAD84630.1 - 3.3 7.1 33.2 4.2 6.7 33.2 1.1 1 0 0 1 1 1 0 SDA1 Asp-B-Hydro_N PF05279.11 BAD84630.1 - 3.3 7.7 36.2 4.5 7.3 36.2 1.2 1 0 0 1 1 1 0 Aspartyl beta-hydroxylase N-terminal region Nop14 PF04147.12 BAD84630.1 - 5.2 5.2 29.0 6.5 4.8 29.0 1.1 1 0 0 1 1 1 0 Nop14-like family DUF4855 PF16147.5 BAD84631.1 - 7.6e-08 31.8 0.4 1.4e-07 30.9 0.4 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4855) Pept_tRNA_hydro PF01195.19 BAD84631.1 - 0.066 13.2 0.0 0.096 12.6 0.0 1.2 1 0 0 1 1 1 0 Peptidyl-tRNA hydrolase tRNA-synt_1e PF01406.19 BAD84633.1 - 1.6e-138 461.2 0.0 2.4e-138 460.6 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.11 BAD84633.1 - 8e-22 77.5 1.0 2.6e-11 42.9 0.4 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) DALR_2 PF09190.11 BAD84633.1 - 2.9e-17 62.9 0.4 9.9e-17 61.2 0.2 2.0 2 0 0 2 2 2 1 DALR domain tRNA-synt_1f PF01921.18 BAD84633.1 - 1.5e-08 34.0 0.3 1.6e-05 24.0 0.0 2.8 2 1 1 3 3 3 2 tRNA synthetases class I (K) tRNA-synt_1 PF00133.22 BAD84633.1 - 2.2e-07 29.6 0.0 0.00018 19.9 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) CdvA PF18822.1 BAD84633.1 - 0.019 14.8 5.5 0.71 9.7 0.1 3.2 3 0 0 3 3 3 0 CdvA-like coiled-coil domain tRNA-synt_1c PF00749.21 BAD84633.1 - 0.02 13.8 1.2 0.16 10.9 1.2 2.3 1 1 0 1 1 1 0 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1d PF00750.19 BAD84633.1 - 0.078 11.9 1.3 0.23 10.4 0.0 2.3 2 1 2 4 4 4 0 tRNA synthetases class I (R) CRISPR_Cas2 PF09827.9 BAD84634.1 - 3.9e-21 75.0 0.1 4.4e-21 74.9 0.1 1.0 1 0 0 1 1 1 1 CRISPR associated protein Cas2 PDDEXK_1 PF12705.7 BAD84635.1 - 5.5e-05 23.2 0.0 0.00014 21.8 0.0 1.6 1 1 0 1 1 1 1 PD-(D/E)XK nuclease superfamily DUF1737 PF08410.10 BAD84635.1 - 0.09 12.7 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1737) AdenylateSensor PF16579.5 BAD84635.1 - 0.11 13.0 0.2 0.27 11.7 0.2 1.6 1 1 0 1 1 1 0 Adenylate sensor of SNF1-like protein kinase OmpH PF03938.14 BAD84635.1 - 0.11 12.8 0.1 0.22 11.9 0.0 1.4 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) Cas_Cas6 PF01881.16 BAD84636.1 - 3.6e-21 76.2 0.0 5.8e-21 75.6 0.0 1.3 1 0 0 1 1 1 1 CRISPR associated protein Cas6 HTH_38 PF13936.6 BAD84637.1 - 3.6e-07 29.8 0.0 8.6e-07 28.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.6 BAD84637.1 - 3.3e-06 27.5 0.1 0.00017 22.0 0.0 2.5 2 0 0 2 2 2 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.19 BAD84637.1 - 3.9e-06 27.0 0.1 6.8e-06 26.2 0.1 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_23 PF13384.6 BAD84637.1 - 1.3e-05 24.8 0.0 2.8e-05 23.8 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain MarR_2 PF12802.7 BAD84637.1 - 6.2e-05 22.8 0.0 0.0002 21.2 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.20 BAD84637.1 - 7.9e-05 22.4 0.2 0.00018 21.3 0.0 1.7 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 BAD84637.1 - 8.4e-05 22.4 0.1 0.00016 21.4 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB GerE PF00196.19 BAD84637.1 - 0.00019 20.9 0.0 0.00035 20.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_11 PF08279.12 BAD84637.1 - 0.001 18.9 0.0 0.0037 17.2 0.0 1.9 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.6 BAD84637.1 - 0.0019 17.7 0.1 0.0042 16.6 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_50 PF18024.1 BAD84637.1 - 0.0021 17.6 0.0 0.0043 16.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_40 PF14493.6 BAD84637.1 - 0.0047 17.4 0.0 0.016 15.7 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 BAD84637.1 - 0.0061 16.2 0.0 0.026 14.2 0.0 1.9 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_Crp_2 PF13545.6 BAD84637.1 - 0.007 16.3 0.0 0.015 15.2 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_28 PF13518.6 BAD84637.1 - 0.011 15.9 0.0 0.029 14.5 0.0 1.8 2 0 0 2 2 1 0 Helix-turn-helix domain MarR PF01047.22 BAD84637.1 - 0.011 15.6 0.0 0.023 14.6 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_DeoR PF08220.12 BAD84637.1 - 0.016 14.9 0.0 0.031 14.0 0.0 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_20 PF12840.7 BAD84637.1 - 0.022 14.8 0.0 0.046 13.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.6 BAD84637.1 - 0.033 14.2 0.0 0.078 13.0 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn helix HTH_10 PF04967.12 BAD84637.1 - 0.061 13.1 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain Dimerisation2 PF16864.5 BAD84637.1 - 0.069 13.1 0.0 0.13 12.3 0.0 1.4 1 0 0 1 1 1 0 Dimerisation domain LexA_DNA_bind PF01726.16 BAD84637.1 - 0.073 12.9 0.0 0.15 11.8 0.0 1.5 1 0 0 1 1 1 0 LexA DNA binding domain HTH_36 PF13730.6 BAD84637.1 - 0.075 13.0 0.0 0.16 12.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Trp_repressor PF01371.19 BAD84637.1 - 0.081 13.1 0.0 0.18 11.9 0.0 1.6 1 0 0 1 1 1 0 Trp repressor protein HxlR PF01638.17 BAD84637.1 - 0.096 12.5 0.0 0.23 11.4 0.0 1.5 1 0 0 1 1 1 0 HxlR-like helix-turn-helix Rrf2 PF02082.20 BAD84637.1 - 0.11 12.9 0.0 0.22 11.9 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator HD PF01966.22 BAD84638.1 - 2.9e-14 53.3 0.1 4.2e-14 52.8 0.1 1.3 1 0 0 1 1 1 1 HD domain HD_6 PF18019.1 BAD84638.1 - 0.0023 18.1 0.0 0.0078 16.4 0.0 1.9 1 1 0 1 1 1 1 HD domain COG6 PF06419.11 BAD84638.1 - 0.056 11.7 0.0 0.13 10.5 0.0 1.5 2 0 0 2 2 2 0 Conserved oligomeric complex COG6 Helicase_C PF00271.31 BAD84639.1 - 6.1e-11 42.6 0.0 2.1e-10 40.9 0.0 1.9 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.29 BAD84639.1 - 7e-10 39.0 0.1 3.3e-09 36.7 0.1 2.0 1 1 0 1 1 1 1 DEAD/DEAH box helicase ResIII PF04851.15 BAD84639.1 - 9.8e-09 35.4 0.3 5e-08 33.1 0.0 2.3 4 0 0 4 4 4 1 Type III restriction enzyme, res subunit AAA_22 PF13401.6 BAD84639.1 - 0.0023 18.2 0.0 0.066 13.5 0.1 2.8 2 1 0 2 2 2 1 AAA domain PhoH PF02562.16 BAD84639.1 - 0.012 15.1 0.0 0.03 13.8 0.0 1.6 2 0 0 2 2 2 0 PhoH-like protein AAA PF00004.29 BAD84639.1 - 0.03 14.7 1.2 3.6 8.0 0.4 3.8 4 1 0 4 4 4 0 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.17 BAD84639.1 - 0.042 13.6 0.0 2 8.1 0.0 2.7 3 0 0 3 3 3 0 IstB-like ATP binding protein Cas_Csx9 PF09658.10 BAD84640.1 - 8e-270 894.2 1.6 9.1e-270 894.0 1.6 1.0 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Csx9) Cas_Cas5d PF09704.10 BAD84641.1 - 0.03 14.2 0.1 0.074 12.9 0.1 1.7 1 1 0 1 1 1 0 CRISPR-associated protein (Cas_Cas5) DevR PF01905.16 BAD84642.1 - 7.3e-79 264.6 0.1 9.7e-76 254.4 0.1 2.1 1 1 0 1 1 1 1 CRISPR-associated negative auto-regulator DevR/Csa2 DUF5082 PF16888.5 BAD84642.1 - 0.053 13.8 0.6 0.1 12.9 0.6 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF5082) STAG PF08514.11 BAD84642.1 - 0.15 12.0 0.8 0.49 10.3 0.3 2.1 2 0 0 2 2 2 0 STAG domain GP41 PF00517.17 BAD84642.1 - 0.18 11.7 0.1 0.33 10.8 0.1 1.4 1 0 0 1 1 1 0 Retroviral envelope protein RecQ_Zn_bind PF16124.5 BAD84642.1 - 0.74 10.6 2.5 65 4.4 0.0 3.6 4 0 0 4 4 4 0 RecQ zinc-binding Cas_Csa5 PF09702.10 BAD84643.1 - 5.9e-30 103.7 0.1 3.7e-29 101.1 0.1 1.9 1 1 0 1 1 1 1 CRISPR-associated protein (Cas_Csa5) Cas_Cas1 PF01867.16 BAD84644.1 - 1.6e-82 276.8 0.1 1.9e-82 276.6 0.1 1.0 1 0 0 1 1 1 1 CRISPR associated protein Cas1 DUF759 PF05537.11 BAD84644.1 - 0.12 11.2 0.3 0.19 10.6 0.3 1.2 1 0 0 1 1 1 0 Borrelia burgdorferi protein of unknown function (DUF759) PIN PF01850.21 BAD84645.1 - 2e-19 70.3 0.1 2.2e-19 70.1 0.1 1.0 1 0 0 1 1 1 1 PIN domain PIN_9 PF18477.1 BAD84645.1 - 0.00098 19.4 0.0 0.94 9.8 0.0 2.1 1 1 0 2 2 2 2 PIN like domain DUF5615 PF18480.1 BAD84645.1 - 0.049 13.4 0.0 0.093 12.5 0.0 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF5615) PIN_12 PF16289.5 BAD84645.1 - 0.064 13.8 0.0 0.1 13.1 0.0 1.5 1 1 0 1 1 1 0 PIN domain MazE_antitoxin PF04014.18 BAD84646.1 - 2e-14 53.1 0.5 2.6e-14 52.7 0.5 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin PrlF_antitoxin PF15937.5 BAD84646.1 - 4.1e-05 24.0 0.1 5.7e-05 23.5 0.1 1.3 1 1 0 1 1 1 1 prlF antitoxin for toxin YhaV_toxin DUF1905 PF08922.11 BAD84646.1 - 0.014 15.4 0.0 0.025 14.6 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1905) Skp1 PF01466.19 BAD84646.1 - 0.017 15.2 3.0 2.4 8.3 0.5 2.2 2 0 0 2 2 2 0 Skp1 family, dimerisation domain Cas_Cas4 PF01930.17 BAD84647.1 - 1.3e-54 184.6 2.0 1.5e-54 184.5 2.0 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.7 BAD84647.1 - 1.5e-05 25.0 0.9 2.6e-05 24.3 0.8 1.3 1 1 0 1 1 1 1 PD-(D/E)XK nuclease superfamily ATPase_2 PF01637.18 BAD84648.1 - 2.7e-15 56.9 2.3 2.7e-15 56.9 2.3 1.5 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_35 PF14516.6 BAD84648.1 - 8.3e-08 31.4 0.1 7.1e-07 28.4 0.1 2.0 1 1 0 1 1 1 1 AAA-like domain AAA_16 PF13191.6 BAD84648.1 - 2.3e-06 28.1 0.1 4.4e-06 27.2 0.1 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_14 PF13173.6 BAD84648.1 - 3.7e-06 27.0 0.1 0.0012 18.8 0.1 2.6 1 1 0 1 1 1 1 AAA domain RNA12 PF10443.9 BAD84648.1 - 0.00044 19.1 0.0 0.46 9.2 0.0 2.2 1 1 1 2 2 2 2 RNA12 protein AAA_22 PF13401.6 BAD84648.1 - 0.0022 18.3 0.0 0.0084 16.4 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA-ATPase_like PF09820.9 BAD84648.1 - 0.0045 16.4 1.7 0.0084 15.6 0.5 2.1 2 1 0 2 2 2 1 Predicted AAA-ATPase MarR_2 PF12802.7 BAD84648.1 - 0.015 15.2 0.0 0.029 14.2 0.0 1.4 1 0 0 1 1 1 0 MarR family AAA PF00004.29 BAD84648.1 - 0.042 14.3 0.1 0.15 12.5 0.1 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 BAD84648.1 - 0.046 13.4 0.0 0.09 12.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain SPOUT_MTase_2 PF14419.6 BAD84648.1 - 0.094 12.1 0.0 0.18 11.2 0.0 1.4 1 0 0 1 1 1 0 AF2226-like SPOUT RNA Methylase fused to THUMP HTH_27 PF13463.6 BAD84648.1 - 0.096 13.2 0.1 0.79 10.3 0.0 2.2 2 0 0 2 2 2 0 Winged helix DNA-binding domain LexA_DNA_bind PF01726.16 BAD84648.1 - 0.17 11.7 0.0 0.5 10.2 0.0 1.8 1 0 0 1 1 1 0 LexA DNA binding domain DEAD PF00270.29 BAD84649.1 - 2.4e-14 53.5 0.0 7.7e-14 51.8 0.0 1.8 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 BAD84649.1 - 1.6e-06 28.4 0.0 3.6e-06 27.3 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain HD_6 PF18019.1 BAD84649.1 - 0.00018 21.7 0.0 0.00068 19.8 0.0 2.1 1 1 0 1 1 1 1 HD domain HD PF01966.22 BAD84649.1 - 0.00052 20.2 0.0 0.0013 18.9 0.0 1.7 1 0 0 1 1 1 1 HD domain ResIII PF04851.15 BAD84649.1 - 0.00067 19.7 0.0 0.0014 18.7 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA PF00004.29 BAD84649.1 - 0.097 13.1 0.1 2 8.8 0.0 2.6 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) Cas_Cas5d PF09704.10 BAD84650.1 - 7.1e-08 32.6 0.4 2.5e-05 24.2 0.1 2.2 2 0 0 2 2 2 2 CRISPR-associated protein (Cas_Cas5) DevR PF01905.16 BAD84651.1 - 6.5e-17 61.5 0.0 6.8e-16 58.1 0.0 2.0 1 1 0 1 1 1 1 CRISPR-associated negative auto-regulator DevR/Csa2 Cas_CT1975 PF09344.10 BAD84651.1 - 0.14 11.6 0.8 0.35 10.3 0.1 1.8 2 0 0 2 2 2 0 CT1975-like protein Cas_CXXC_CXXC PF09706.10 BAD84652.1 - 1.5e-11 44.3 0.0 3.6e-11 43.1 0.0 1.7 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_CXXC_CXXC) Cas_Cas6 PF01881.16 BAD84653.1 - 1.5e-33 116.4 0.0 2e-33 116.0 0.0 1.2 1 0 0 1 1 1 1 CRISPR associated protein Cas6 ATP-grasp_5 PF13549.6 BAD84654.1 - 5.3e-84 281.1 0.2 6.1e-84 280.9 0.2 1.0 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_2 PF08442.10 BAD84654.1 - 3.5e-09 36.5 0.1 5.7e-09 35.8 0.1 1.5 1 1 0 1 1 1 1 ATP-grasp domain ATP-grasp PF02222.22 BAD84654.1 - 0.00024 20.7 0.0 0.00036 20.1 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.19 BAD84654.1 - 0.00039 20.2 0.1 0.00078 19.3 0.0 1.5 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CPSase_L_D2 PF02786.17 BAD84654.1 - 0.00063 19.3 0.1 0.0016 17.9 0.1 1.7 1 1 1 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain DUF5126 PF17166.4 BAD84654.1 - 0.017 15.0 0.0 0.03 14.2 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF5126) Fer4_NifH PF00142.18 BAD84654.1 - 0.08 12.4 0.1 0.12 11.8 0.1 1.2 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family DUF4139 PF13598.6 BAD84655.1 - 0.038 13.7 0.0 1.1 8.9 0.0 2.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4139) Bact_lectin PF18483.1 BAD84656.1 - 2.7e-23 83.0 1.7 2.7e-23 83.0 1.7 3.3 4 1 0 4 4 4 1 Bacterial lectin Lectin_leg-like PF03388.13 BAD84656.1 - 0.00012 21.5 0.1 0.012 15.0 0.0 2.3 2 0 0 2 2 2 2 Legume-like lectin family Syntaxin-6_N PF09177.11 BAD84656.1 - 0.12 13.0 0.1 0.12 13.0 0.1 3.2 1 1 2 3 3 3 0 Syntaxin 6, N-terminal Baculo_PEP_C PF04513.12 BAD84656.1 - 1.4 8.9 5.8 3.6 7.6 0.8 2.5 1 1 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus Mucin PF01456.17 BAD84656.1 - 3.6 7.6 10.1 9 6.3 10.1 1.6 1 0 0 1 1 1 0 Mucin-like glycoprotein SWIM PF04434.17 BAD84658.1 - 0.014 15.0 0.1 0.023 14.4 0.1 1.4 1 0 0 1 1 1 0 SWIM zinc finger Topoisom_bac PF01131.20 BAD84659.1 - 7.9e-77 259.0 4.8 1.3e-50 172.6 1.2 2.9 2 1 0 2 2 2 2 DNA topoisomerase Toprim PF01751.22 BAD84659.1 - 7.5e-28 96.8 0.0 3.6e-27 94.6 0.0 2.3 2 0 0 2 2 1 1 Toprim domain Intein_splicing PF14890.6 BAD84659.1 - 1.2e-22 80.3 0.0 3.8e-22 78.7 0.0 1.9 1 0 0 1 1 1 1 Intein splicing domain LAGLIDADG_3 PF14528.6 BAD84659.1 - 1.5e-12 47.6 0.5 7.8e-12 45.4 0.2 2.5 2 0 0 2 2 2 1 LAGLIDADG-like domain DEAD PF00270.29 BAD84659.1 - 5.6e-12 45.8 0.0 2e-11 44.0 0.0 2.0 2 0 0 2 2 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 BAD84659.1 - 1.1e-10 41.9 0.2 0.00017 21.9 0.0 4.7 5 0 0 5 5 5 2 Helicase conserved C-terminal domain ResIII PF04851.15 BAD84659.1 - 5.5e-09 36.2 0.2 2.9e-08 33.9 0.0 2.1 1 1 0 2 2 2 1 Type III restriction enzyme, res subunit zf_Rg PF17915.1 BAD84659.1 - 2.8e-08 33.0 0.2 2.8e-08 33.0 0.2 1.9 2 0 0 2 2 1 1 Reverse gyrase zinc finger Zn-ribbon_8 PF09723.10 BAD84659.1 - 0.00099 19.2 0.8 0.00099 19.2 0.8 2.1 2 0 0 2 2 2 1 Zinc ribbon domain LAGLIDADG_1 PF00961.19 BAD84659.1 - 0.0016 19.3 0.0 0.0089 17.0 0.0 2.4 1 0 0 1 1 1 1 LAGLIDADG endonuclease OrfB_Zn_ribbon PF07282.11 BAD84659.1 - 0.011 15.6 2.9 0.062 13.2 0.1 2.6 2 0 0 2 2 2 0 Putative transposase DNA-binding domain Toprim_4 PF13662.6 BAD84659.1 - 0.015 15.7 0.0 0.056 13.9 0.0 2.0 1 0 0 1 1 1 0 Toprim domain DUF35_N PF12172.8 BAD84659.1 - 0.021 14.7 7.7 0.035 14.0 2.8 2.5 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) TRAF_BIRC3_bd PF16673.5 BAD84659.1 - 0.031 14.1 2.1 0.42 10.4 0.1 3.0 2 0 0 2 2 2 0 TNF receptor-associated factor BIRC3 binding domain HypA PF01155.19 BAD84659.1 - 0.048 13.7 0.1 0.048 13.7 0.1 2.2 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TackOD1 PF18551.1 BAD84659.1 - 0.099 12.3 1.9 0.17 11.5 0.1 2.1 2 0 0 2 2 2 0 Thaumarchaeal output domain 1 Cep3 PF16846.5 BAD84659.1 - 0.1 11.1 0.5 0.17 10.4 0.5 1.2 1 0 0 1 1 1 0 Centromere DNA-binding protein complex CBF3 subunit B DUF5371 PF17341.2 BAD84659.1 - 0.15 12.3 0.3 0.78 10.0 0.3 2.3 1 0 0 1 1 1 0 Family of unknown function (DUF5371) zf-FPG_IleRS PF06827.14 BAD84659.1 - 0.22 11.4 7.1 0.3 11.0 1.4 2.6 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS HIP1_clath_bdg PF16515.5 BAD84659.1 - 0.23 12.1 0.7 0.98 10.1 0.7 2.1 1 0 0 1 1 1 0 Clathrin-binding domain of Huntingtin-interacting protein 1 CEP63 PF17045.5 BAD84659.1 - 0.24 11.3 3.2 0.36 10.7 0.4 2.3 2 0 0 2 2 2 0 Centrosomal protein of 63 kDa DZR PF12773.7 BAD84659.1 - 0.61 10.2 4.8 0.94 9.6 0.4 2.2 2 0 0 2 2 2 0 Double zinc ribbon Radical_SAM PF04055.21 BAD84659.1 - 1.7 9.0 9.7 1.3 9.4 0.1 4.6 5 1 1 6 6 4 0 Radical SAM superfamily DUF87 PF01935.17 BAD84659.1 - 4.5 7.3 5.5 2.6 8.1 0.2 3.0 3 0 0 3 3 2 0 Helicase HerA, central domain DUF3375 PF11855.8 BAD84659.1 - 5.1 5.9 6.8 1.4 7.8 0.2 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF3375) Phage_Mu_Gam PF07352.12 BAD84659.1 - 5.4 6.9 9.0 21 5.0 1.8 3.5 3 0 0 3 3 3 0 Bacteriophage Mu Gam like protein TF_Zn_Ribbon PF08271.12 BAD84659.1 - 6.8 6.3 7.3 3.4 7.2 0.1 2.9 3 0 0 3 3 3 0 TFIIB zinc-binding TrmB PF01978.19 BAD84660.1 - 4.6e-19 68.1 0.0 8.9e-19 67.2 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Regulator_TrmB PF11495.8 BAD84660.1 - 2.2e-05 23.7 0.3 3.2e-05 23.2 0.3 1.2 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB RraB PF06877.11 BAD84660.1 - 0.011 16.4 0.1 0.059 14.1 0.1 2.1 1 1 0 1 1 1 0 Regulator of ribonuclease activity B PLDc_2 PF13091.6 BAD84660.1 - 0.021 14.7 1.2 0.1 12.5 1.2 2.1 1 1 0 1 1 1 0 PLD-like domain Phage_DsbA PF11126.8 BAD84660.1 - 4.8 7.5 10.3 1.5 9.1 0.6 3.2 3 0 0 3 3 3 0 Transcriptional regulator DsbA HTH_29 PF13551.6 BAD84661.1 - 7.8e-07 29.0 0.0 8.4e-07 28.9 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn helix HTH_5 PF01022.20 BAD84661.1 - 7.4e-06 25.7 0.0 9.1e-06 25.4 0.0 1.1 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family DprA_WH PF17782.1 BAD84661.1 - 1.8e-05 24.8 0.0 1.9e-05 24.7 0.0 1.1 1 0 0 1 1 1 1 DprA winged helix domain HTH_24 PF13412.6 BAD84661.1 - 6.4e-05 22.4 0.0 9.3e-05 21.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding FaeA PF04703.12 BAD84661.1 - 9.7e-05 22.7 0.0 0.00011 22.4 0.0 1.2 1 0 0 1 1 1 1 FaeA-like protein HTH_23 PF13384.6 BAD84661.1 - 0.00013 21.6 0.0 0.00019 21.1 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain HTH_IclR PF09339.10 BAD84661.1 - 0.00014 21.6 0.0 0.00017 21.3 0.0 1.1 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 BAD84661.1 - 0.00015 21.6 0.1 0.00016 21.5 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_7 PF02796.15 BAD84661.1 - 0.00018 21.5 0.0 0.00024 21.1 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase MarR_2 PF12802.7 BAD84661.1 - 0.0004 20.2 0.0 0.00043 20.1 0.0 1.1 1 0 0 1 1 1 1 MarR family HTH_Tnp_ISL3 PF13542.6 BAD84661.1 - 0.00043 19.6 0.0 0.00054 19.3 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_40 PF14493.6 BAD84661.1 - 0.00079 19.8 0.0 0.00092 19.6 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain GntR PF00392.21 BAD84661.1 - 0.001 18.7 0.1 0.0013 18.3 0.1 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family SinI PF08671.10 BAD84661.1 - 0.0017 18.1 0.0 0.021 14.6 0.0 2.3 2 0 0 2 2 2 1 Anti-repressor SinI z-alpha PF02295.17 BAD84661.1 - 0.0028 17.7 0.0 0.0035 17.4 0.0 1.3 1 1 0 1 1 1 1 Adenosine deaminase z-alpha domain Sigma70_r3 PF04539.16 BAD84661.1 - 0.0038 17.3 0.0 0.0057 16.7 0.0 1.4 1 1 0 1 1 1 1 Sigma-70 region 3 HTH_28 PF13518.6 BAD84661.1 - 0.0055 16.8 0.0 0.0073 16.4 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 BAD84661.1 - 0.0056 16.3 0.0 0.012 15.3 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 BAD84661.1 - 0.0078 15.7 0.0 0.015 14.8 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 Rrf2 PF02082.20 BAD84661.1 - 0.012 15.9 0.0 0.015 15.6 0.0 1.1 1 0 0 1 1 1 0 Transcriptional regulator HTH_DeoR PF08220.12 BAD84661.1 - 0.013 15.2 0.0 0.017 14.9 0.0 1.2 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_9 PF08221.11 BAD84661.1 - 0.014 15.5 0.0 0.018 15.1 0.0 1.1 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_10 PF04967.12 BAD84661.1 - 0.017 14.9 0.0 0.029 14.2 0.0 1.3 1 0 0 1 1 1 0 HTH DNA binding domain TFIIE_alpha PF02002.17 BAD84661.1 - 0.022 14.6 0.1 0.037 13.9 0.1 1.5 1 1 0 1 1 1 0 TFIIE alpha subunit HTH_11 PF08279.12 BAD84661.1 - 0.023 14.6 0.0 0.027 14.4 0.0 1.3 1 0 0 1 1 1 0 HTH domain IF2_N PF04760.15 BAD84661.1 - 0.024 14.4 0.1 0.11 12.3 0.0 1.9 1 1 1 2 2 2 0 Translation initiation factor IF-2, N-terminal region IGR PF09597.10 BAD84661.1 - 0.028 14.5 0.0 0.04 14.0 0.0 1.4 1 0 0 1 1 1 0 IGR protein motif TnsD PF15978.5 BAD84661.1 - 0.043 12.8 0.1 0.045 12.7 0.1 1.1 1 0 0 1 1 1 0 Tn7-like transposition protein D HRDC PF00570.23 BAD84661.1 - 0.05 13.6 0.0 0.081 12.9 0.0 1.4 1 0 0 1 1 1 0 HRDC domain HTH_17 PF12728.7 BAD84661.1 - 0.057 13.6 0.1 0.087 13.0 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain DUF4279 PF14106.6 BAD84661.1 - 0.058 13.6 0.0 0.071 13.3 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4279) HTH_42 PF06224.12 BAD84661.1 - 0.065 12.8 0.0 0.067 12.7 0.0 1.0 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_AsnC-type PF13404.6 BAD84661.1 - 0.071 13.0 0.0 0.1 12.4 0.0 1.3 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain GerE PF00196.19 BAD84661.1 - 0.075 12.6 0.0 0.095 12.3 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family MarR PF01047.22 BAD84661.1 - 0.093 12.7 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_Crp_2 PF13545.6 BAD84661.1 - 0.13 12.3 0.0 0.17 11.8 0.0 1.3 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain Auto_anti-p27 PF06677.12 BAD84662.1 - 1.4e-13 50.7 1.4 2.2e-13 50.1 1.4 1.3 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) GAT PF03127.14 BAD84662.1 - 0.00091 19.5 0.7 0.0013 19.0 0.7 1.2 1 0 0 1 1 1 1 GAT domain zinc_ribbon_2 PF13240.6 BAD84662.1 - 0.0025 17.5 2.7 0.0061 16.2 2.7 1.6 1 1 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 BAD84662.1 - 0.0027 17.7 0.7 0.0043 17.1 0.7 1.2 1 0 0 1 1 1 1 Double zinc ribbon DNA_ligase_ZBD PF03119.16 BAD84662.1 - 0.0029 17.6 4.0 0.026 14.6 0.3 2.4 2 0 0 2 2 2 1 NAD-dependent DNA ligase C4 zinc finger domain zf-ribbon_3 PF13248.6 BAD84662.1 - 0.0033 16.8 2.7 0.007 15.7 2.7 1.5 1 1 0 1 1 1 1 zinc-ribbon domain Prok-RING_1 PF14446.6 BAD84662.1 - 0.0039 17.1 0.4 0.0055 16.6 0.4 1.2 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 DUF4635 PF15466.6 BAD84662.1 - 0.0059 16.1 2.3 0.0079 15.7 2.3 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4635) Apolipoprotein PF01442.18 BAD84662.1 - 0.0084 16.0 3.2 0.011 15.7 3.2 1.1 1 0 0 1 1 1 1 Apolipoprotein A1/A4/E domain Zn_Tnp_IS1595 PF12760.7 BAD84662.1 - 0.01 15.8 2.8 1.1 9.3 0.1 2.3 1 1 1 2 2 2 1 Transposase zinc-ribbon domain zf-LITAF-like PF10601.9 BAD84662.1 - 0.024 14.9 1.0 0.27 11.5 0.0 2.1 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain TF_Zn_Ribbon PF08271.12 BAD84662.1 - 0.025 14.1 1.6 0.054 13.0 1.6 1.6 1 0 0 1 1 1 0 TFIIB zinc-binding Rep_1 PF01446.17 BAD84662.1 - 0.04 13.4 0.1 0.069 12.6 0.1 1.3 1 0 0 1 1 1 0 Replication protein Phage_Mu_Gam PF07352.12 BAD84662.1 - 0.045 13.6 1.9 0.057 13.3 1.9 1.2 1 0 0 1 1 1 0 Bacteriophage Mu Gam like protein BLOC1_2 PF10046.9 BAD84662.1 - 0.047 14.0 1.8 0.065 13.5 1.8 1.2 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 zf-C4_Topoisom PF01396.19 BAD84662.1 - 0.063 13.1 3.1 0.28 11.0 3.1 2.0 1 1 0 1 1 1 0 Topoisomerase DNA binding C4 zinc finger Actin_micro PF17003.5 BAD84662.1 - 0.064 12.4 0.0 0.081 12.1 0.0 1.0 1 0 0 1 1 1 0 Putative actin-like family zinc-ribbons_6 PF07191.12 BAD84662.1 - 0.064 13.3 0.7 0.089 12.8 0.7 1.3 1 0 0 1 1 1 0 zinc-ribbons zf-NADH-PPase PF09297.11 BAD84662.1 - 0.067 12.9 5.8 0.62 9.8 5.8 2.2 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain Cys_rich_CPCC PF14206.6 BAD84662.1 - 0.091 12.6 0.1 0.13 12.1 0.1 1.3 1 0 0 1 1 1 0 Cysteine-rich CPCC DUF2423 PF10338.9 BAD84662.1 - 0.11 12.7 2.1 0.24 11.7 2.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2423) DUF3837 PF12939.7 BAD84662.1 - 0.12 12.8 1.8 0.31 11.5 1.8 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF3837) DegQ PF08181.11 BAD84662.1 - 0.12 12.4 2.4 0.25 11.5 2.4 1.6 1 1 0 1 1 1 0 DegQ (SacQ) family Colicin PF01024.19 BAD84662.1 - 0.16 11.8 0.5 0.21 11.4 0.5 1.1 1 0 0 1 1 1 0 Colicin pore forming domain GFA PF04828.14 BAD84662.1 - 0.17 12.3 0.9 1.8 8.9 0.0 2.1 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme Fzo_mitofusin PF04799.13 BAD84662.1 - 0.17 11.4 1.0 0.21 11.2 1.0 1.1 1 0 0 1 1 1 0 fzo-like conserved region Fmp27_WPPW PF10359.9 BAD84662.1 - 0.19 10.5 3.4 0.24 10.2 3.4 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain FAM76 PF16046.5 BAD84662.1 - 0.22 10.9 3.0 0.83 8.9 1.3 1.8 1 1 1 2 2 2 0 FAM76 protein ArAE_2_N PF10337.9 BAD84662.1 - 0.25 10.3 0.0 0.25 10.3 0.0 1.1 1 0 0 1 1 1 0 Putative ER transporter, 6TM, N-terminal DUF812 PF05667.11 BAD84662.1 - 0.38 9.6 5.9 0.18 10.7 4.1 1.3 2 0 0 2 2 2 0 Protein of unknown function (DUF812) OrfB_Zn_ribbon PF07282.11 BAD84662.1 - 0.39 10.7 2.1 0.75 9.8 2.1 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-ACC PF17848.1 BAD84662.1 - 0.45 10.6 0.0 0.45 10.6 0.0 3.3 4 0 0 4 4 3 0 Acetyl-coA carboxylase zinc finger domain NOB1_Zn_bind PF08772.11 BAD84662.1 - 0.49 10.6 2.9 6.7 6.9 2.9 2.3 1 1 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like RecR PF02132.15 BAD84662.1 - 1.2 8.8 3.8 1.6 8.3 2.0 2.2 2 1 0 2 2 2 0 RecR protein XhlA PF10779.9 BAD84662.1 - 2 8.7 4.6 16 5.8 2.6 2.1 1 1 1 2 2 2 0 Haemolysin XhlA Nudix_N_2 PF14803.6 BAD84662.1 - 2.7 8.0 8.5 8 6.5 5.1 2.8 2 1 0 2 2 2 0 Nudix N-terminal Arginase PF00491.21 BAD84663.1 - 2.8e-18 66.4 0.0 4.7e-18 65.7 0.0 1.3 1 1 0 1 1 1 1 Arginase family OMPdecase PF00215.24 BAD84664.1 - 4.1e-28 98.5 5.0 4.1e-28 98.5 5.0 1.7 2 0 0 2 2 2 1 Orotidine 5'-phosphate decarboxylase / HUMPS family SIS PF01380.22 BAD84664.1 - 3.3e-21 75.5 0.1 7.8e-21 74.3 0.1 1.7 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.6 BAD84664.1 - 1.6e-09 37.9 2.6 1.2e-07 31.9 0.3 2.9 1 1 1 2 2 2 1 SIS domain ThiG PF05690.14 BAD84664.1 - 1.7e-07 30.8 1.4 2.6e-07 30.2 0.6 1.6 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG His_biosynth PF00977.21 BAD84664.1 - 6.8e-06 25.7 0.7 6.1e-05 22.6 0.4 2.2 1 1 1 2 2 2 1 Histidine biosynthesis protein DUF561 PF04481.12 BAD84664.1 - 1.5e-05 24.3 0.4 6e-05 22.3 0.3 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF561) TMP-TENI PF02581.17 BAD84664.1 - 2.3e-05 23.8 4.8 5.4e-05 22.6 3.4 2.3 2 1 0 2 2 2 1 Thiamine monophosphate synthase PEP_mutase PF13714.6 BAD84664.1 - 3.7e-05 23.3 2.6 0.0041 16.6 0.2 3.1 3 1 1 4 4 4 2 Phosphoenolpyruvate phosphomutase HMGL-like PF00682.19 BAD84664.1 - 0.00018 21.2 2.6 0.026 14.1 0.3 2.5 1 1 1 2 2 2 2 HMGL-like IGPS PF00218.21 BAD84664.1 - 0.00023 20.4 2.0 0.00037 19.7 0.9 2.0 2 1 0 2 2 2 1 Indole-3-glycerol phosphate synthase QRPTase_C PF01729.19 BAD84664.1 - 0.00039 20.2 3.8 0.03 14.1 0.1 2.5 1 1 1 2 2 2 2 Quinolinate phosphoribosyl transferase, C-terminal domain NanE PF04131.14 BAD84664.1 - 0.00064 19.0 1.8 0.00064 19.0 1.8 1.8 2 0 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase ADH_zinc_N PF00107.26 BAD84664.1 - 0.00084 19.3 4.5 0.0038 17.2 0.4 3.0 2 2 1 3 3 3 2 Zinc-binding dehydrogenase Ribul_P_3_epim PF00834.19 BAD84664.1 - 0.0011 18.4 2.1 0.0022 17.4 2.1 1.6 1 0 0 1 1 1 1 Ribulose-phosphate 3 epimerase family DUF2529 PF10740.9 BAD84664.1 - 0.0016 18.1 0.3 0.046 13.4 0.0 2.6 2 1 0 2 2 2 1 Domain of unknown function (DUF2529) Trp_syntA PF00290.20 BAD84664.1 - 0.0026 16.6 3.0 0.077 11.8 1.0 2.8 2 1 1 3 3 3 1 Tryptophan synthase alpha chain NMO PF03060.15 BAD84664.1 - 0.0035 16.8 2.0 0.0057 16.1 2.0 1.3 1 0 0 1 1 1 1 Nitronate monooxygenase PRAI PF00697.22 BAD84664.1 - 0.022 14.5 0.3 0.043 13.6 0.3 1.5 1 0 0 1 1 1 0 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Dus PF01207.17 BAD84664.1 - 0.027 13.6 0.6 0.063 12.4 0.6 1.7 1 0 0 1 1 1 0 Dihydrouridine synthase (Dus) AP_endonuc_2 PF01261.24 BAD84664.1 - 0.031 13.7 0.1 0.26 10.7 0.1 2.6 3 1 0 3 3 3 0 Xylose isomerase-like TIM barrel Aldolase PF01081.19 BAD84664.1 - 0.046 13.1 0.9 0.82 9.0 0.9 2.3 1 1 0 1 1 1 0 KDPG and KHG aldolase Radical_SAM PF04055.21 BAD84664.1 - 0.16 12.4 1.5 3.6 7.9 1.3 2.9 2 1 0 2 2 2 0 Radical SAM superfamily DUF1829 PF08862.10 BAD84665.1 - 0.083 13.4 0.0 0.21 12.1 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function DUF1829 HAD_2 PF13419.6 BAD84666.1 - 1.7e-32 113.0 0.0 2.2e-32 112.6 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 BAD84666.1 - 5.7e-20 72.5 0.0 8.1e-14 52.4 0.0 2.1 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 BAD84666.1 - 7.3e-10 38.8 0.0 1.5e-09 37.8 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 BAD84666.1 - 3.5e-09 37.4 0.0 1e-08 35.8 0.0 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase PGP_phosphatase PF09419.10 BAD84666.1 - 0.00095 18.8 0.0 0.046 13.3 0.0 2.2 2 0 0 2 2 2 1 Mitochondrial PGP phosphatase Hydrolase_6 PF13344.6 BAD84666.1 - 0.042 14.0 0.0 0.69 10.1 0.0 2.7 2 1 0 2 2 2 0 Haloacid dehalogenase-like hydrolase DUF4392 PF14336.6 BAD84668.1 - 1.9e-65 221.3 0.3 4.2e-63 213.5 0.3 2.0 1 1 0 1 1 1 1 Domain of unknown function (DUF4392) HD PF01966.22 BAD84669.1 - 2.2e-19 69.9 1.7 2.2e-19 69.9 1.7 2.0 2 0 0 2 2 2 1 HD domain Fe_dep_repr_C PF02742.15 BAD84669.1 - 0.017 15.2 4.2 0.075 13.1 0.1 2.8 3 0 0 3 3 3 0 Iron dependent repressor, metal binding and dimerisation domain DUF4202 PF13875.6 BAD84669.1 - 0.11 12.4 0.1 0.36 10.7 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4202) KH_5 PF13184.6 BAD84670.1 - 1e-09 38.3 2.2 1.1e-09 38.3 0.8 1.7 2 0 0 2 2 2 1 NusA-like KH domain KH_2 PF07650.17 BAD84670.1 - 7.2e-09 35.4 0.6 1e-08 34.8 0.3 1.6 2 0 0 2 2 2 1 KH domain Ribosomal_S7e PF01251.18 BAD84670.1 - 2.9e-06 27.2 0.3 9.6e-06 25.5 0.0 1.9 2 1 0 2 2 2 1 Ribosomal protein S7e KH_1 PF00013.29 BAD84670.1 - 0.00014 21.6 0.8 0.0003 20.6 0.8 1.5 1 0 0 1 1 1 1 KH domain KH_4 PF13083.6 BAD84670.1 - 0.0013 18.5 1.2 0.0021 17.9 0.5 1.7 2 0 0 2 2 2 1 KH domain Phi-29_GP3 PF05435.11 BAD84673.1 - 0.00057 19.4 0.1 0.00066 19.2 0.1 1.0 1 0 0 1 1 1 1 Phi-29 DNA terminal protein GP3 UPF0564 PF10595.9 BAD84673.1 - 0.025 13.7 0.2 0.033 13.3 0.2 1.1 1 0 0 1 1 1 0 Uncharacterised protein family UPF0564 RBD-FIP PF09457.10 BAD84674.1 - 0.023 14.6 0.2 0.054 13.4 0.2 1.5 1 0 0 1 1 1 0 FIP domain DUF3045 PF11243.8 BAD84676.1 - 0.13 12.4 0.2 1.2 9.3 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3045) DUF5122 PF17164.4 BAD84680.1 - 0.001 19.3 11.3 0.17 12.2 1.6 4.0 4 0 0 4 4 4 2 Domain of unknown function (DUF5122) beta-propeller NHL PF01436.21 BAD84680.1 - 0.0043 17.0 0.3 2.3 8.4 0.0 3.6 3 0 0 3 3 3 2 NHL repeat tRNA-synt_2 PF00152.20 BAD84681.1 - 4.6e-96 321.6 0.5 5.4e-96 321.4 0.5 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 BAD84681.1 - 6e-12 45.4 0.2 1.1e-11 44.6 0.2 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain TRAP_beta PF05753.14 BAD84682.1 - 1.1e-07 31.4 0.1 2.9e-07 30.1 0.1 1.7 1 0 0 1 1 1 1 Translocon-associated protein beta (TRAPB) DUF11 PF01345.18 BAD84682.1 - 4.1e-05 23.8 2.8 0.0011 19.3 0.1 3.8 3 2 1 4 4 4 1 Domain of unknown function DUF11 BatD PF13584.6 BAD84682.1 - 0.0002 20.3 0.5 0.0027 16.6 0.1 2.4 2 0 0 2 2 2 1 Oxygen tolerance DUF2393 PF09624.10 BAD84682.1 - 0.025 14.6 0.1 12 5.8 0.0 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2393) CARDB PF07705.11 BAD84682.1 - 0.031 14.5 0.4 0.39 11.0 0.0 3.0 3 0 0 3 3 3 0 CARDB DUF4179 PF13786.6 BAD84682.1 - 0.032 14.7 0.1 5.5 7.5 0.2 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4179) NPCBM_assoc PF10633.9 BAD84682.1 - 0.12 12.6 0.2 2.6 8.3 0.0 3.2 3 0 0 3 3 3 0 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF3619 PF12279.8 BAD84682.1 - 0.2 12.0 0.0 0.43 10.9 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3619) GldM_C PF12080.8 BAD84682.1 - 0.72 10.1 6.6 1.5 9.0 0.2 3.6 3 1 0 3 3 3 0 GldM C-terminal domain Peptidase_M20 PF01546.28 BAD84683.1 - 3.1e-38 131.6 1.2 3.8e-38 131.3 1.2 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 BAD84683.1 - 1.6e-11 44.1 0.6 3.4e-11 43.0 0.1 1.9 2 0 0 2 2 2 1 Peptidase dimerisation domain OrfB_IS605 PF01385.19 BAD84684.1 - 1.3e-30 106.1 0.5 2.3e-30 105.3 0.0 1.7 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.11 BAD84684.1 - 9.4e-21 73.5 0.0 1.8e-20 72.6 0.0 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain RuvX PF03652.15 BAD84684.1 - 0.00094 19.6 0.0 0.0025 18.2 0.0 1.7 1 0 0 1 1 1 1 Holliday junction resolvase MAP65_ASE1 PF03999.12 BAD84684.1 - 0.014 14.2 0.2 0.019 13.7 0.2 1.1 1 0 0 1 1 1 0 Microtubule associated protein (MAP65/ASE1 family) HTH_OrfB_IS605 PF12323.8 BAD84684.1 - 0.022 14.3 0.0 0.056 12.9 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain 7TMR-DISM_7TM PF07695.11 BAD84685.1 - 0.0052 16.7 6.6 0.0058 16.5 6.6 1.0 1 0 0 1 1 1 1 7TM diverse intracellular signalling Insulin_TMD PF17870.1 BAD84685.1 - 0.19 11.8 0.3 0.19 11.8 0.3 2.7 2 1 1 3 3 3 0 Insulin receptor trans-membrane segment Met_10 PF02475.16 BAD84686.1 - 7e-68 228.3 0.1 9.4e-68 227.9 0.1 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Trm5_N PF18093.1 BAD84686.1 - 1.2e-15 57.2 0.1 3.3e-15 55.7 0.1 1.8 1 0 0 1 1 1 1 tRNA methyltransferase 5 N-terminal domain PrmA PF06325.13 BAD84686.1 - 3.7e-07 29.8 0.0 6.4e-07 29.1 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 BAD84686.1 - 0.00016 21.3 0.0 0.00027 20.5 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_15 PF09445.10 BAD84686.1 - 0.0014 18.2 0.0 0.0022 17.6 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltr_RsmB-F PF01189.17 BAD84686.1 - 0.0017 18.1 0.0 0.0086 15.7 0.0 1.9 1 1 1 2 2 2 1 16S rRNA methyltransferase RsmB/F TRM PF02005.16 BAD84686.1 - 0.0017 17.6 0.0 0.0023 17.2 0.0 1.2 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase DNA_methylase PF00145.17 BAD84686.1 - 0.017 14.5 0.0 0.027 13.8 0.0 1.2 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase Cons_hypoth95 PF03602.15 BAD84686.1 - 0.045 13.4 0.0 0.077 12.6 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Methyltransf_23 PF13489.6 BAD84686.1 - 0.2 11.5 0.0 0.41 10.5 0.0 1.6 2 0 0 2 2 2 0 Methyltransferase domain AAA_14 PF13173.6 BAD84687.1 - 4.3e-32 110.9 0.0 8e-32 110.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain DUF4143 PF13635.6 BAD84687.1 - 9.1e-11 42.0 0.0 2.1e-10 40.8 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) AAA_25 PF13481.6 BAD84687.1 - 0.058 13.0 0.0 0.1 12.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain PmbA_TldD PF01523.16 BAD84688.1 - 1.2e-46 159.8 0.0 1.8e-46 159.2 0.0 1.3 1 0 0 1 1 1 1 Putative modulator of DNA gyrase DUF2283 PF10049.9 BAD84689.1 - 7.2e-19 67.8 1.6 9.1e-19 67.4 1.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2283) DUF866 PF05907.13 BAD84689.1 - 0.078 12.9 0.0 0.095 12.6 0.0 1.1 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF866) DUF4258 PF14076.6 BAD84690.1 - 1.9e-11 44.2 0.3 6.4e-11 42.5 0.1 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF4258) BetR PF08667.10 BAD84690.1 - 0.049 13.7 0.0 0.055 13.5 0.0 1.1 1 0 0 1 1 1 0 BetR domain PmbA_TldD PF01523.16 BAD84691.1 - 4e-45 154.8 0.1 6.3e-45 154.2 0.1 1.3 1 0 0 1 1 1 1 Putative modulator of DNA gyrase AvrM-A PF18241.1 BAD84691.1 - 0.019 15.4 4.3 0.039 14.4 4.3 1.4 1 0 0 1 1 1 0 Flax-rust effector AvrM-A Cupin_2 PF07883.11 BAD84692.1 - 6e-19 67.5 0.0 7.7e-19 67.2 0.0 1.1 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 BAD84692.1 - 5.8e-13 48.9 0.1 7.4e-13 48.6 0.1 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.22 BAD84692.1 - 1e-07 31.7 0.0 1.2e-07 31.4 0.0 1.2 1 0 0 1 1 1 1 Cupin CENP-C_C PF11699.8 BAD84692.1 - 6.8e-06 26.2 0.1 9e-06 25.8 0.1 1.1 1 0 0 1 1 1 1 Mif2/CENP-C like MannoseP_isomer PF01050.18 BAD84692.1 - 3.9e-05 23.6 0.0 4.5e-05 23.4 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_3 PF05899.12 BAD84692.1 - 0.00062 19.4 0.3 0.002 17.8 0.3 1.8 1 1 0 1 1 1 1 Protein of unknown function (DUF861) Asp_Arg_Hydrox PF05118.15 BAD84692.1 - 0.00062 19.6 0.0 0.0008 19.3 0.0 1.2 1 0 0 1 1 1 1 Aspartyl/Asparaginyl beta-hydroxylase AraC_binding_2 PF14525.6 BAD84692.1 - 0.0044 16.7 0.0 0.0044 16.7 0.0 1.1 1 0 0 1 1 1 1 AraC-binding-like domain Ectoine_synth PF06339.12 BAD84692.1 - 0.027 14.7 0.0 0.034 14.3 0.0 1.1 1 0 0 1 1 1 0 Ectoine synthase Cupin_7 PF12973.7 BAD84692.1 - 0.087 12.7 0.0 0.1 12.6 0.0 1.2 1 0 0 1 1 1 0 ChrR Cupin-like domain JmjC PF02373.22 BAD84692.1 - 0.096 13.1 0.1 0.14 12.6 0.1 1.5 1 1 0 1 1 1 0 JmjC domain, hydroxylase DUF386 PF04074.12 BAD84692.1 - 0.098 12.6 1.7 1.1 9.1 1.8 1.9 1 1 1 2 2 2 0 YhcH/YjgK/YiaL Asp_Glu_race PF01177.22 BAD84693.1 - 2.1e-65 220.7 0.0 2.3e-65 220.6 0.0 1.0 1 0 0 1 1 1 1 Asp/Glu/Hydantoin racemase CorA PF01544.18 BAD84694.1 - 5.9e-68 229.3 1.3 7.1e-68 229.1 1.3 1.0 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein MMR_HSR1_C PF08438.10 BAD84695.1 - 4.8e-36 123.7 0.0 7.4e-36 123.1 0.0 1.3 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.23 BAD84695.1 - 2.2e-20 72.9 0.0 2.1e-19 69.7 0.0 2.4 2 1 0 2 2 2 1 50S ribosome-binding GTPase TGS PF02824.21 BAD84695.1 - 6.4e-14 51.7 0.0 1.4e-13 50.7 0.0 1.6 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.18 BAD84695.1 - 4.1e-10 39.4 0.1 2.7e-07 30.3 0.0 2.5 2 0 0 2 2 2 2 Ferrous iron transport protein B MMR_HSR1_Xtn PF16897.5 BAD84695.1 - 0.00051 20.0 0.0 0.001 19.1 0.0 1.4 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain RsgA_GTPase PF03193.16 BAD84695.1 - 0.02 14.8 0.1 0.1 12.5 0.0 2.0 2 0 0 2 2 2 0 RsgA GTPase GTP_EFTU PF00009.27 BAD84695.1 - 0.087 12.4 0.0 0.69 9.4 0.0 2.4 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain YchF-GTPase_C PF06071.13 BAD84695.1 - 0.11 12.7 0.0 1.3 9.3 0.0 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF933) LexA_DNA_bind PF01726.16 BAD84695.1 - 0.18 11.6 0.5 14 5.5 0.0 3.0 2 1 1 3 3 3 0 LexA DNA binding domain CYTH PF01928.21 BAD84696.1 - 2e-25 89.7 2.4 2.3e-25 89.6 2.4 1.0 1 0 0 1 1 1 1 CYTH domain GerE PF00196.19 BAD84696.1 - 0.1 12.2 0.0 0.2 11.2 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_24 PF13412.6 BAD84697.1 - 3.4e-16 58.5 1.1 5e-16 58.0 1.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 BAD84697.1 - 2.2e-12 46.6 1.7 3.1e-12 46.1 1.7 1.2 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_20 PF12840.7 BAD84697.1 - 1.4e-07 31.5 0.1 2.6e-07 30.6 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 BAD84697.1 - 2e-07 30.8 0.3 3.5e-07 30.1 0.3 1.4 1 0 0 1 1 1 1 HTH domain HTH_27 PF13463.6 BAD84697.1 - 3.9e-06 27.3 0.1 7.6e-06 26.3 0.1 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.22 BAD84697.1 - 8.3e-06 25.6 0.3 1.4e-05 24.9 0.3 1.3 1 0 0 1 1 1 1 MarR family Sigma70_r4 PF04545.16 BAD84697.1 - 1.6e-05 24.3 0.3 2.6e-05 23.7 0.3 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 TrmB PF01978.19 BAD84697.1 - 2.7e-05 24.0 0.0 3.9e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 BAD84697.1 - 6.2e-05 22.8 0.1 0.0001 22.1 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 BAD84697.1 - 8.1e-05 22.3 0.0 0.00016 21.4 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_23 PF13384.6 BAD84697.1 - 0.00013 21.7 0.0 0.0002 21.0 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain HTH_5 PF01022.20 BAD84697.1 - 0.00024 20.9 0.0 0.00039 20.2 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_DeoR PF08220.12 BAD84697.1 - 0.00053 19.7 0.3 0.00092 18.9 0.3 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain Penicillinase_R PF03965.16 BAD84697.1 - 0.0023 18.2 0.0 0.005 17.2 0.0 1.5 1 0 0 1 1 1 1 Penicillinase repressor HTH_38 PF13936.6 BAD84697.1 - 0.0033 17.2 0.7 0.0052 16.5 0.1 1.5 2 0 0 2 2 1 1 Helix-turn-helix domain B-block_TFIIIC PF04182.12 BAD84697.1 - 0.016 15.4 0.2 0.13 12.5 0.0 2.2 2 0 0 2 2 2 0 B-block binding subunit of TFIIIC RuvB_C PF05491.13 BAD84697.1 - 0.02 14.7 2.3 0.027 14.4 0.1 2.2 2 1 1 3 3 3 0 RuvB C-terminal winged helix domain AsnC_trans_reg PF01037.21 BAD84697.1 - 0.045 13.7 0.0 0.084 12.9 0.0 1.5 1 0 0 1 1 1 0 Lrp/AsnC ligand binding domain PCI PF01399.27 BAD84697.1 - 0.047 14.2 0.2 0.15 12.6 0.1 1.8 2 0 0 2 2 2 0 PCI domain Sigma70_r4_2 PF08281.12 BAD84697.1 - 0.064 12.9 0.1 0.15 11.8 0.1 1.7 1 1 0 1 1 1 0 Sigma-70, region 4 Fe_dep_repress PF01325.19 BAD84697.1 - 0.09 13.0 0.0 0.21 11.8 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain DUF742 PF05331.11 BAD84697.1 - 0.091 12.6 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF742) Rrf2 PF02082.20 BAD84697.1 - 0.11 12.9 0.1 0.39 11.1 0.1 1.8 2 0 0 2 2 2 0 Transcriptional regulator HTH_28 PF13518.6 BAD84697.1 - 0.13 12.4 0.0 0.21 11.7 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Kelch_4 PF13418.6 BAD84697.1 - 0.14 12.2 0.0 0.22 11.6 0.0 1.4 1 0 0 1 1 1 0 Galactose oxidase, central domain HTH_Tnp_Tc3_1 PF11427.8 BAD84697.1 - 0.16 11.8 0.1 0.27 11.1 0.1 1.4 1 0 0 1 1 1 0 Tc3 transposase HTH_31 PF13560.6 BAD84697.1 - 0.16 12.3 0.0 0.32 11.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Flavoprotein PF02441.19 BAD84698.1 - 6.4e-29 100.8 0.2 8.3e-29 100.4 0.2 1.1 1 0 0 1 1 1 1 Flavoprotein Oxidored_nitro PF00148.19 BAD84698.1 - 0.055 12.2 0.1 0.07 11.8 0.1 1.2 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase Epimerase PF01370.21 BAD84698.1 - 0.17 11.3 0.1 0.26 10.7 0.1 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family DisA_N PF02457.16 BAD84699.1 - 1.4e-22 79.5 0.0 3.1e-22 78.4 0.0 1.6 1 0 0 1 1 1 1 DisA bacterial checkpoint controller nucleotide-binding Inhibitor_I78 PF11720.8 BAD84699.1 - 0.086 12.9 0.0 0.5 10.5 0.0 2.2 2 0 0 2 2 2 0 Peptidase inhibitor I78 family PK PF00224.21 BAD84700.1 - 2.3e-119 398.4 1.8 3e-119 398.0 1.8 1.1 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.16 BAD84700.1 - 4.5e-23 81.7 0.0 1.4e-22 80.1 0.0 1.9 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain HpcH_HpaI PF03328.14 BAD84700.1 - 0.00023 20.4 0.2 0.00057 19.1 0.0 1.7 2 0 0 2 2 2 1 HpcH/HpaI aldolase/citrate lyase family Peptidase_M54 PF07998.11 BAD84701.1 - 7e-41 140.4 1.1 9.5e-21 74.7 0.1 2.0 2 0 0 2 2 2 2 Peptidase family M54 Metallopep PF12044.8 BAD84701.1 - 0.0021 16.7 0.0 0.0028 16.3 0.0 1.1 1 0 0 1 1 1 1 Putative peptidase family Peptidase_M10 PF00413.24 BAD84701.1 - 0.0076 16.1 0.0 0.0089 15.9 0.0 1.3 1 0 0 1 1 1 1 Matrixin Reprolysin_5 PF13688.6 BAD84701.1 - 0.016 15.4 0.0 0.031 14.4 0.0 1.5 2 0 0 2 2 2 0 Metallo-peptidase family M12 Reprolysin_3 PF13582.6 BAD84701.1 - 0.023 15.2 0.0 0.036 14.6 0.0 1.3 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Reprolysin_4 PF13583.6 BAD84701.1 - 0.085 12.5 0.0 0.13 11.9 0.0 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Peptidase_M66 PF10462.9 BAD84701.1 - 0.19 10.6 0.1 0.28 10.1 0.1 1.1 1 0 0 1 1 1 0 Peptidase M66 Prenyltrans PF00432.21 BAD84702.1 - 6.7e-05 22.5 10.9 0.039 13.7 0.0 6.3 8 0 0 8 8 8 3 Prenyltransferase and squalene oxidase repeat CRCB PF02537.15 BAD84703.1 - 1.7e-25 89.2 6.5 2.1e-25 88.9 6.5 1.1 1 0 0 1 1 1 1 CrcB-like protein, Camphor Resistance (CrcB) DUF190 PF02641.15 BAD84704.1 - 2.1e-40 137.0 0.6 1.5e-39 134.2 0.2 1.9 1 1 1 2 2 2 2 Uncharacterized ACR, COG1993 YIEGIA PF14045.6 BAD84704.1 - 0.1 11.4 0.1 0.11 11.3 0.1 1.2 1 0 0 1 1 1 0 YIEGIA protein DFP PF04127.15 BAD84706.1 - 1.5e-58 197.7 3.2 5.7e-57 192.6 0.6 2.2 2 0 0 2 2 2 2 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.19 BAD84706.1 - 3.3e-43 147.2 5.9 4.7e-42 143.4 2.6 2.2 2 0 0 2 2 2 2 Flavoprotein PTS_IIB PF02302.17 BAD84706.1 - 0.0017 19.0 2.8 0.17 12.6 0.2 3.3 3 0 0 3 3 3 1 PTS system, Lactose/Cellobiose specific IIB subunit Radical_SAM PF04055.21 BAD84706.1 - 0.035 14.5 0.6 0.6 10.5 0.0 2.9 1 1 1 2 2 2 0 Radical SAM superfamily MutL_C PF08676.11 BAD84706.1 - 0.061 13.1 0.1 8.5 6.1 0.0 3.2 3 0 0 3 3 3 0 MutL C terminal dimerisation domain GST_C PF00043.25 BAD84706.1 - 0.075 13.3 0.1 15 5.9 0.0 2.7 2 1 0 2 2 2 0 Glutathione S-transferase, C-terminal domain Usp PF00582.26 BAD84706.1 - 0.24 11.9 3.1 0.78 10.3 0.6 2.6 2 0 0 2 2 2 0 Universal stress protein family Pyr_redox PF00070.27 BAD84706.1 - 0.24 12.0 4.0 36 5.0 0.1 3.8 4 0 0 4 4 4 0 Pyridine nucleotide-disulphide oxidoreductase Hydrolase_3 PF08282.12 BAD84707.1 - 1.8e-05 24.6 0.5 0.029 14.1 0.2 2.1 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 BAD84707.1 - 0.0051 17.1 1.0 0.063 13.6 0.1 2.2 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase UPF0029 PF01205.19 BAD84708.1 - 8.7e-33 112.8 0.0 1.2e-32 112.3 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein family UPF0029 DUF1949 PF09186.11 BAD84708.1 - 2.4e-15 56.1 0.0 6.3e-15 54.8 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF1949) PPR PF01535.20 BAD84709.1 - 0.017 15.3 0.7 5.4 7.5 0.0 3.7 4 0 0 4 4 4 0 PPR repeat DEAD PF00270.29 BAD84710.1 - 2.7e-23 82.6 0.0 6e-23 81.5 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 BAD84710.1 - 1.9e-18 66.8 0.0 8.2e-18 64.8 0.0 2.0 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DUF1998 PF09369.10 BAD84710.1 - 5.6e-16 59.1 0.0 1.6e-15 57.6 0.0 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF1998) ResIII PF04851.15 BAD84710.1 - 1.8e-05 24.9 0.0 5.2e-05 23.3 0.0 1.8 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit PaaB PF06243.11 BAD84710.1 - 0.18 12.0 0.2 0.47 10.7 0.2 1.7 1 0 0 1 1 1 0 Phenylacetic acid degradation B Esterase PF00756.20 BAD84711.1 - 5.6e-33 114.6 0.0 9.1e-33 113.9 0.0 1.4 1 0 0 1 1 1 1 Putative esterase Peptidase_S9 PF00326.21 BAD84711.1 - 0.0011 18.4 0.2 0.0021 17.6 0.2 1.4 1 1 0 1 1 1 1 Prolyl oligopeptidase family CBM_20 PF00686.19 BAD84711.1 - 0.0032 17.3 0.0 0.0095 15.8 0.0 1.9 1 0 0 1 1 1 1 Starch binding domain Hydrolase_4 PF12146.8 BAD84711.1 - 0.0051 16.1 0.0 0.0072 15.6 0.0 1.1 1 0 0 1 1 1 1 Serine aminopeptidase, S33 TPM_phosphatase PF04536.14 BAD84711.1 - 0.033 14.4 0.0 0.29 11.3 0.0 2.3 2 0 0 2 2 2 0 TPM domain Esterase_phd PF10503.9 BAD84711.1 - 0.033 13.7 0.0 0.056 12.9 0.0 1.3 1 0 0 1 1 1 0 Esterase PHB depolymerase SpoIIIAH PF12685.7 BAD84711.1 - 0.041 13.7 0.6 0.061 13.2 0.2 1.4 2 0 0 2 2 2 0 SpoIIIAH-like protein BAAT_C PF08840.11 BAD84711.1 - 0.13 12.1 0.0 0.23 11.4 0.0 1.3 1 0 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal Shisa PF13908.6 BAD84711.1 - 0.14 12.4 1.6 0.21 11.8 1.6 1.2 1 0 0 1 1 1 0 Wnt and FGF inhibitory regulator UPF0227 PF05728.12 BAD84711.1 - 0.15 12.0 0.0 0.25 11.3 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0227) DHHW PF14286.6 BAD84711.1 - 0.47 9.7 2.3 3.3 6.9 0.0 2.2 2 0 0 2 2 2 0 DHHW protein Rubrerythrin PF02915.17 BAD84712.1 - 5.8e-26 91.5 13.8 8.8e-25 87.7 13.8 2.0 1 1 0 1 1 1 1 Rubrerythrin Ferritin PF00210.24 BAD84712.1 - 0.0012 18.8 7.9 0.0022 17.9 7.9 1.4 1 1 0 1 1 1 1 Ferritin-like domain zinc_ribbon_15 PF17032.5 BAD84712.1 - 0.0016 19.2 0.5 0.0023 18.6 0.5 1.3 1 0 0 1 1 1 1 zinc-ribbon family zinc_ribbon_2 PF13240.6 BAD84712.1 - 0.0046 16.6 2.3 0.01 15.5 2.3 1.6 1 1 0 1 1 1 1 zinc-ribbon domain Cys_rich_CPCC PF14206.6 BAD84712.1 - 0.0056 16.5 2.1 0.013 15.3 2.1 1.6 1 0 0 1 1 1 1 Cysteine-rich CPCC DZR PF12773.7 BAD84712.1 - 0.0062 16.5 0.2 0.0098 15.9 0.2 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 BAD84712.1 - 0.052 13.0 2.8 1.5 8.4 0.5 2.2 2 0 0 2 2 2 0 zinc-ribbon domain RecR PF02132.15 BAD84712.1 - 0.21 11.2 0.4 0.43 10.2 0.4 1.5 1 0 0 1 1 1 0 RecR protein DNA_ligase_ZBD PF03119.16 BAD84712.1 - 0.25 11.4 8.2 3.8 7.6 0.6 2.6 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Prim_Zn_Ribbon PF08273.12 BAD84712.1 - 0.33 11.3 3.6 3.8 7.9 0.4 2.3 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase Rubredoxin PF00301.20 BAD84712.1 - 0.5 10.4 6.0 2.4 8.3 0.6 2.3 1 1 1 2 2 2 0 Rubredoxin Zn-ribbon_8 PF09723.10 BAD84712.1 - 0.53 10.4 3.9 6.1 7.1 4.0 2.3 1 1 1 2 2 2 0 Zinc ribbon domain zf-NADH-PPase PF09297.11 BAD84712.1 - 0.58 9.9 2.3 4.5 7.0 0.4 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain TF_Zn_Ribbon PF08271.12 BAD84712.1 - 1.8 8.1 5.3 27 4.4 0.4 2.4 1 1 1 2 2 2 0 TFIIB zinc-binding Auto_anti-p27 PF06677.12 BAD84712.1 - 5.5 7.2 5.5 6.1 7.1 0.5 2.1 1 1 2 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Rubredoxin PF00301.20 BAD84713.1 - 3.1e-26 91.1 4.9 3.4e-26 91.0 4.9 1.0 1 0 0 1 1 1 1 Rubredoxin zf-Sec23_Sec24 PF04810.15 BAD84713.1 - 0.00091 19.2 0.2 0.2 11.7 0.0 2.1 2 0 0 2 2 2 2 Sec23/Sec24 zinc finger zf-RanBP PF00641.18 BAD84713.1 - 0.001 18.3 3.8 0.34 10.2 0.2 2.2 2 0 0 2 2 2 2 Zn-finger in Ran binding protein and others Vps36-NZF-N PF16988.5 BAD84713.1 - 0.0037 16.6 1.7 0.37 10.2 0.0 2.1 2 0 0 2 2 2 2 Vacuolar protein sorting 36 NZF-N zinc-finger domain A2L_zn_ribbon PF08792.10 BAD84713.1 - 0.0083 15.8 1.0 2.6 7.9 0.0 2.2 2 0 0 2 2 2 2 A2L zinc ribbon domain zinc_ribbon_10 PF10058.9 BAD84713.1 - 0.014 15.1 0.4 0.98 9.2 0.0 2.1 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein PHD_4 PF16866.5 BAD84713.1 - 0.059 13.5 3.0 0.49 10.5 3.0 2.0 1 1 0 1 1 1 0 PHD-finger Prok-RING_1 PF14446.6 BAD84713.1 - 0.078 12.9 2.9 1.3 9.0 2.9 2.0 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 TF_Zn_Ribbon PF08271.12 BAD84713.1 - 0.088 12.3 2.5 7.2 6.2 0.7 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding RbpA PF13397.6 BAD84713.1 - 0.14 12.8 0.3 3 8.5 0.1 2.0 1 1 1 2 2 2 0 RNA polymerase-binding protein zf-MIZ PF02891.20 BAD84713.1 - 0.17 11.7 3.4 1.8 8.4 0.2 2.1 2 0 0 2 2 2 0 MIZ/SP-RING zinc finger ADK_lid PF05191.14 BAD84713.1 - 0.23 11.5 2.0 1.8 8.6 2.0 2.0 1 1 0 1 1 1 0 Adenylate kinase, active site lid Zn_ribbon_SprT PF17283.2 BAD84713.1 - 0.65 9.9 4.0 4.9 7.1 0.1 2.1 2 0 0 2 2 2 0 SprT-like zinc ribbon domain Desulfoferrodox PF01880.18 BAD84714.1 - 4.3e-32 110.6 0.2 4.9e-32 110.4 0.2 1.0 1 0 0 1 1 1 1 Desulfoferrodoxin SoxY PF13501.6 BAD84714.1 - 0.014 15.6 0.0 0.017 15.3 0.0 1.1 1 0 0 1 1 1 0 Sulfur oxidation protein SoxY DUF996 PF06195.13 BAD84715.1 - 3.4e-06 27.4 12.2 1.9e-05 25.0 12.2 2.2 1 1 0 1 1 1 1 Protein of unknown function (DUF996) YlaC PF10777.9 BAD84715.1 - 1.7 8.5 3.7 0.83 9.5 0.0 2.1 2 0 0 2 2 2 0 Inner membrane protein YlaC FeS_assembly_P PF01883.19 BAD84716.1 - 4.9e-06 26.6 0.0 6.7e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 Iron-sulfur cluster assembly protein SHMT PF00464.19 BAD84717.1 - 3.5e-81 272.8 0.0 4.3e-81 272.5 0.0 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.21 BAD84717.1 - 6.7e-13 48.5 0.0 1e-12 47.9 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 BAD84717.1 - 2.1e-10 40.4 0.0 4.4e-10 39.3 0.0 1.4 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 BAD84717.1 - 2.4e-10 39.9 0.0 4.2e-10 39.1 0.0 1.5 1 1 0 1 1 1 1 Aminotransferase class-V SelA PF03841.13 BAD84717.1 - 0.00029 20.0 0.0 0.00046 19.3 0.0 1.3 1 0 0 1 1 1 1 L-seryl-tRNA selenium transferase Cys_Met_Meta_PP PF01053.20 BAD84717.1 - 0.003 16.1 0.0 0.0063 15.1 0.0 1.5 1 1 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme CheD PF03975.13 BAD84717.1 - 0.023 14.8 0.0 0.05 13.7 0.0 1.5 1 0 0 1 1 1 0 CheD chemotactic sensory transduction DegT_DnrJ_EryC1 PF01041.17 BAD84717.1 - 0.047 13.0 0.0 0.062 12.6 0.0 1.3 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family Imm21 PF15589.6 BAD84718.1 - 0.057 13.5 0.0 0.081 13.0 0.0 1.3 1 0 0 1 1 1 0 Immunity protein 21 NVEALA PF14055.6 BAD84718.1 - 0.14 12.1 0.0 0.75 9.8 0.0 2.0 2 0 0 2 2 2 0 NVEALA protein DUF5134 PF17197.4 BAD84719.1 - 0.081 12.8 0.0 0.091 12.7 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF5134) TFIIS_C PF01096.18 BAD84722.1 - 9.2e-21 73.4 4.6 9.2e-21 73.4 4.6 3.1 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.16 BAD84722.1 - 2.6e-17 62.4 16.2 2.4e-16 59.3 2.4 3.1 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit Zn_Tnp_IS1595 PF12760.7 BAD84722.1 - 9.4e-07 28.7 12.4 0.0026 17.7 3.1 2.6 2 1 0 2 2 2 2 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 BAD84722.1 - 1.8e-05 24.6 8.8 0.0061 16.5 0.7 2.6 2 1 0 2 2 2 2 Putative transposase DNA-binding domain PhnA_Zn_Ribbon PF08274.12 BAD84722.1 - 5e-05 23.2 4.5 0.073 13.0 0.2 3.2 3 0 0 3 3 3 2 PhnA Zinc-Ribbon Baculo_LEF5_C PF11792.8 BAD84722.1 - 8.8e-05 22.1 0.8 8.8e-05 22.1 0.8 3.4 3 1 0 3 3 3 1 Baculoviridae late expression factor 5 C-terminal domain DZR PF12773.7 BAD84722.1 - 0.00013 22.0 6.7 0.074 13.1 0.5 2.7 2 1 0 2 2 2 2 Double zinc ribbon zf-ribbon_3 PF13248.6 BAD84722.1 - 0.00035 19.9 17.7 0.022 14.1 3.4 4.0 3 1 0 3 3 3 2 zinc-ribbon domain IBR PF01485.21 BAD84722.1 - 0.00099 19.3 9.2 0.084 13.1 0.7 2.9 2 1 0 2 2 2 2 IBR domain, a half RING-finger domain TF_Zn_Ribbon PF08271.12 BAD84722.1 - 0.0012 18.3 11.5 0.064 12.8 1.1 3.2 2 1 1 3 3 3 2 TFIIB zinc-binding zinc_ribbon_13 PF09855.9 BAD84722.1 - 0.0013 18.9 13.9 0.54 10.5 0.1 4.0 2 2 1 3 3 3 1 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zinc_ribbon_2 PF13240.6 BAD84722.1 - 0.0013 18.3 21.2 0.6 9.9 0.2 4.1 3 1 0 3 3 3 1 zinc-ribbon domain zinc_ribbon_4 PF13717.6 BAD84722.1 - 0.0015 18.4 13.1 0.45 10.5 0.1 4.3 3 1 2 5 5 5 2 zinc-ribbon domain Rpr2 PF04032.16 BAD84722.1 - 0.0022 18.3 3.7 0.021 15.1 3.7 2.1 1 1 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain Zn-ribbon_8 PF09723.10 BAD84722.1 - 0.0027 17.8 10.6 1.8 8.8 0.0 4.2 4 0 0 4 4 4 1 Zinc ribbon domain UPF0547 PF10571.9 BAD84722.1 - 0.006 16.6 14.1 4.6 7.4 0.3 4.2 4 0 0 4 4 4 0 Uncharacterised protein family UPF0547 DUF35_N PF12172.8 BAD84722.1 - 0.007 16.2 7.3 8.2 6.4 0.1 4.0 4 0 0 4 4 4 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Nudix_N_2 PF14803.6 BAD84722.1 - 0.0084 16.0 14.4 1.1 9.3 0.7 4.1 2 2 0 2 2 2 1 Nudix N-terminal Lar_restr_allev PF14354.6 BAD84722.1 - 0.017 15.5 10.2 0.32 11.4 0.8 2.6 2 1 0 2 2 2 0 Restriction alleviation protein Lar DUF2387 PF09526.10 BAD84722.1 - 0.023 14.8 12.7 0.72 10.0 1.7 2.6 2 2 0 2 2 2 0 Probable metal-binding protein (DUF2387) zf-CHY PF05495.12 BAD84722.1 - 0.023 15.2 0.9 0.023 15.2 0.9 2.5 1 1 1 2 2 1 0 CHY zinc finger Auto_anti-p27 PF06677.12 BAD84722.1 - 0.044 14.0 2.5 0.044 14.0 2.5 2.8 3 0 0 3 3 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) C1_1 PF00130.22 BAD84722.1 - 0.048 13.5 6.9 0.35 10.8 1.2 2.5 2 1 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Cys_rich_CPCC PF14206.6 BAD84722.1 - 0.052 13.4 0.3 0.052 13.4 0.3 2.9 3 0 0 3 3 3 0 Cysteine-rich CPCC FYVE_2 PF02318.16 BAD84722.1 - 0.055 13.7 5.9 0.68 10.2 0.6 2.3 1 1 1 2 2 2 0 FYVE-type zinc finger ANAPC4_WD40 PF12894.7 BAD84722.1 - 0.057 13.7 0.0 0.073 13.4 0.0 1.2 1 0 0 1 1 1 0 Anaphase-promoting complex subunit 4 WD40 domain NOB1_Zn_bind PF08772.11 BAD84722.1 - 0.1 12.8 14.7 0.61 10.3 0.5 3.5 2 2 2 4 4 4 0 Nin one binding (NOB1) Zn-ribbon like Ribosomal_S27e PF01667.17 BAD84722.1 - 0.17 11.6 7.8 8.8 6.1 2.9 3.2 2 1 0 2 2 2 0 Ribosomal protein S27 Rubredoxin_2 PF18073.1 BAD84722.1 - 0.19 11.5 19.7 0.67 9.7 0.3 4.1 4 0 0 4 4 4 0 Rubredoxin metal binding domain A2L_zn_ribbon PF08792.10 BAD84722.1 - 0.19 11.5 13.4 17 5.3 3.6 4.1 3 1 0 3 3 3 0 A2L zinc ribbon domain HypA PF01155.19 BAD84722.1 - 0.22 11.6 7.9 0.81 9.7 2.9 2.9 1 1 2 3 3 3 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf_UBZ PF18439.1 BAD84722.1 - 0.22 11.2 11.3 2.9 7.5 0.1 4.1 4 0 0 4 4 4 0 Ubiquitin-Binding Zinc Finger eIF-5_eIF-2B PF01873.17 BAD84722.1 - 0.29 11.0 5.5 0.34 10.8 0.5 2.3 2 1 0 2 2 2 0 Domain found in IF2B/IF5 Prok-RING_1 PF14446.6 BAD84722.1 - 0.3 11.1 5.8 7.1 6.6 0.4 3.2 3 0 0 3 3 3 0 Prokaryotic RING finger family 1 RPA_interact_C PF14768.6 BAD84722.1 - 0.34 11.5 4.9 11 6.7 4.9 2.6 1 1 0 1 1 1 0 Replication protein A interacting C-terminal Zn_ribbon_recom PF13408.6 BAD84722.1 - 0.36 11.4 7.3 2.1 9.0 0.1 2.7 2 1 0 2 2 2 0 Recombinase zinc beta ribbon domain TerY_C PF15616.6 BAD84722.1 - 0.37 10.9 5.4 6.6 6.9 0.7 2.4 1 1 0 2 2 2 0 TerY-C metal binding domain Ribosomal_L37ae PF01780.19 BAD84722.1 - 0.41 10.8 11.4 0.66 10.1 1.0 3.1 2 1 0 2 2 2 0 Ribosomal L37ae protein family zf-H2C2_2 PF13465.6 BAD84722.1 - 0.52 10.8 13.3 5.9 7.5 0.1 4.1 4 0 0 4 4 4 0 Zinc-finger double domain zf-UBP PF02148.19 BAD84722.1 - 0.53 10.7 4.6 1.2 9.5 0.2 2.5 2 1 0 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein zf-TFIIB PF13453.6 BAD84722.1 - 0.58 9.5 11.2 3.1 7.2 1.2 3.0 2 2 0 2 2 2 0 Transcription factor zinc-finger Ogr_Delta PF04606.12 BAD84722.1 - 0.7 9.9 10.6 0.26 11.3 2.1 2.9 2 2 0 2 2 2 0 Ogr/Delta-like zinc finger Prim_Zn_Ribbon PF08273.12 BAD84722.1 - 0.9 9.9 12.9 6 7.2 0.1 3.3 3 1 0 3 3 3 0 Zinc-binding domain of primase-helicase Ribosomal_L32p PF01783.23 BAD84722.1 - 0.99 9.7 9.6 1.1 9.5 0.9 3.3 3 1 0 3 3 3 0 Ribosomal L32p protein family zf_C2H2_10 PF18414.1 BAD84722.1 - 1 8.9 14.7 2.1 8.0 0.4 3.9 4 0 0 4 4 4 0 C2H2 type zinc-finger zf-ISL3 PF14690.6 BAD84722.1 - 1.1 10.0 13.7 3.2 8.5 0.1 3.9 3 1 1 4 4 4 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Opy2 PF09463.10 BAD84722.1 - 1.2 9.5 0.1 1.2 9.5 0.1 3.5 4 0 0 4 4 4 0 Opy2 protein CIAPIN1 PF05093.13 BAD84722.1 - 1.3 9.6 5.1 0.11 13.1 0.4 1.5 2 0 0 2 2 1 0 Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis RecR PF02132.15 BAD84722.1 - 1.4 8.6 10.0 2.6 7.7 2.0 3.5 3 1 0 3 3 3 0 RecR protein YhfH PF14149.6 BAD84722.1 - 1.4 9.0 15.4 5.4 7.1 0.1 4.4 5 0 0 5 5 4 0 YhfH-like protein DUF3797 PF12677.7 BAD84722.1 - 1.4 8.8 14.3 0.79 9.6 4.2 2.9 2 2 0 2 2 2 0 Domain of unknown function (DUF3797) zf-ACC PF17848.1 BAD84722.1 - 1.7 8.8 15.0 11 6.2 0.1 4.1 4 0 0 4 4 4 0 Acetyl-coA carboxylase zinc finger domain zf-Mss51 PF13824.6 BAD84722.1 - 2.1 8.5 13.7 3.2 7.9 3.4 3.5 1 1 2 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-BED PF02892.15 BAD84722.1 - 2.1 8.4 9.8 2.8 8.0 0.4 3.2 3 1 0 3 3 3 0 BED zinc finger zf-NADH-PPase PF09297.11 BAD84722.1 - 2.2 8.0 13.6 1.8 8.3 4.1 3.5 3 1 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain zf-RRN7 PF11781.8 BAD84722.1 - 2.5 7.9 10.2 20 5.0 0.1 3.8 4 0 0 4 4 4 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Mu-like_Com PF10122.9 BAD84722.1 - 2.8 7.5 6.4 32 4.1 0.3 3.2 3 0 0 3 3 3 0 Mu-like prophage protein Com zinc_ribbon_10 PF10058.9 BAD84722.1 - 3.4 7.5 14.6 2.6 7.9 2.7 3.7 2 2 1 3 3 3 0 Predicted integral membrane zinc-ribbon metal-binding protein DUF3268 PF11672.8 BAD84722.1 - 3.5 8.0 9.3 0.96 9.8 1.7 2.4 2 1 0 2 2 2 0 zinc-finger-containing domain CpXC PF14353.6 BAD84722.1 - 4 7.5 13.3 1.4 8.9 0.3 3.9 1 1 2 3 3 3 0 CpXC protein DUF2225 PF09986.9 BAD84722.1 - 4.4 7.0 10.1 0.17 11.6 0.3 2.9 3 1 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2225) DNA_RNApol_7kD PF03604.13 BAD84722.1 - 4.7 7.0 12.0 31 4.4 0.6 3.7 3 1 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit zf-IS66 PF13005.7 BAD84722.1 - 5.2 7.5 17.4 6.1 7.3 0.2 4.3 3 1 2 5 5 5 0 zinc-finger binding domain of transposase IS66 VP_N-CPKC PF11475.8 BAD84722.1 - 6 6.9 6.4 44 4.1 0.1 3.2 3 0 0 3 3 3 0 Virion protein N terminal domain zinc_ribbon_15 PF17032.5 BAD84722.1 - 6.4 7.6 14.3 27 5.6 6.9 3.1 2 1 0 2 2 2 0 zinc-ribbon family zf-C4_Topoisom PF01396.19 BAD84722.1 - 8.9 6.2 17.7 6.4 6.6 3.2 3.3 2 2 1 3 3 2 0 Topoisomerase DNA binding C4 zinc finger ADK_lid PF05191.14 BAD84722.1 - 9 6.4 12.9 30 4.7 0.1 4.1 4 0 0 4 4 4 0 Adenylate kinase, active site lid Rubredoxin PF00301.20 BAD84722.1 - 9.3 6.4 19.1 3.2 7.9 0.2 4.2 4 1 0 4 4 4 0 Rubredoxin Hemopexin PF00045.19 BAD84723.1 - 0.2 11.6 0.0 0.25 11.3 0.0 1.2 1 0 0 1 1 1 0 Hemopexin PCNA_N PF00705.18 BAD84724.1 - 2e-20 72.8 0.0 4.3e-17 62.0 0.0 2.1 2 0 0 2 2 2 2 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.15 BAD84724.1 - 9e-11 42.0 0.0 4.5e-10 39.8 0.0 2.1 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, C-terminal domain Rad1 PF02144.16 BAD84724.1 - 1.9e-09 37.0 0.0 9.4e-06 24.9 0.0 2.0 1 1 1 2 2 2 2 Repair protein Rad1/Rec1/Rad17 Rad9 PF04139.13 BAD84724.1 - 0.0027 17.2 0.0 0.0048 16.4 0.0 1.7 1 1 0 1 1 1 1 Rad9 Hus1 PF04005.12 BAD84724.1 - 0.031 13.4 0.0 0.092 11.8 0.0 1.8 1 1 0 1 1 1 0 Hus1-like protein Chalcone_2 PF16035.5 BAD84724.1 - 0.087 12.6 0.1 0.2 11.4 0.0 1.6 2 0 0 2 2 2 0 Chalcone isomerase like RSS_P20 PF11757.8 BAD84725.1 - 0.49 10.9 3.5 0.21 12.0 0.6 1.8 2 1 0 2 2 2 0 Suppressor of RNA silencing P21-like N-terminal domain AhpC-TSA PF00578.21 BAD84726.1 - 1.4e-32 112.2 0.0 2.2e-32 111.6 0.0 1.3 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 BAD84726.1 - 1.3e-14 54.2 0.0 1.8e-14 53.7 0.0 1.1 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.9 BAD84726.1 - 2.9e-10 39.8 0.3 5e-10 39.1 0.3 1.4 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin Acetyltransf_3 PF13302.7 BAD84727.1 - 1.7e-28 100.0 0.1 2.1e-28 99.7 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 BAD84727.1 - 1.3e-16 60.9 0.2 1.7e-16 60.5 0.2 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.7 BAD84727.1 - 1.6e-13 51.1 0.0 2e-13 50.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 BAD84727.1 - 0.00014 21.5 0.1 0.00023 20.9 0.1 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 BAD84727.1 - 0.00036 20.5 0.0 0.00049 20.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 BAD84727.1 - 0.0072 16.7 0.1 0.012 16.1 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain HTH_3 PF01381.22 BAD84728.1 - 2.1e-13 50.1 0.8 1.5e-12 47.4 0.2 2.5 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.6 BAD84728.1 - 6.2e-10 39.3 0.3 2.3e-09 37.4 0.2 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_19 PF12844.7 BAD84728.1 - 5e-08 32.8 0.3 5.2e-07 29.6 0.1 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_17 PF12728.7 BAD84728.1 - 0.00016 21.8 0.3 0.092 12.9 0.0 3.3 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_26 PF13443.6 BAD84728.1 - 0.001 19.4 0.0 0.0029 18.0 0.0 1.8 1 1 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_11 PF08279.12 BAD84728.1 - 0.0033 17.4 0.1 0.012 15.5 0.1 2.0 1 0 0 1 1 1 1 HTH domain HTH_25 PF13413.6 BAD84728.1 - 0.014 15.3 0.2 0.033 14.0 0.2 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.6 BAD84728.1 - 0.016 15.0 0.3 0.045 13.6 0.0 1.9 2 0 0 2 2 2 0 Homeodomain-like domain Hjc PF01870.18 BAD84728.1 - 0.041 13.9 0.3 0.23 11.5 0.1 2.3 3 0 0 3 3 2 0 Archaeal holliday junction resolvase (hjc) MerR PF00376.23 BAD84728.1 - 0.056 13.2 0.0 0.2 11.5 0.0 2.0 2 0 0 2 2 2 0 MerR family regulatory protein HTH_38 PF13936.6 BAD84728.1 - 0.059 13.1 0.4 1 9.2 0.0 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_24 PF13412.6 BAD84728.1 - 0.071 12.7 0.1 0.16 11.5 0.1 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_29 PF13551.6 BAD84728.1 - 0.11 12.6 0.0 1.4 9.0 0.0 2.3 2 0 0 2 2 2 0 Winged helix-turn helix HTH_8 PF02954.19 BAD84728.1 - 0.11 12.3 1.7 0.13 12.1 0.1 2.0 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family HTH_7 PF02796.15 BAD84728.1 - 0.21 11.7 0.6 0.84 9.8 0.0 2.3 3 0 0 3 3 3 0 Helix-turn-helix domain of resolvase HD PF01966.22 BAD84729.1 - 1.3e-14 54.4 1.1 1.3e-14 54.4 1.1 2.0 2 1 0 2 2 2 1 HD domain HDOD PF08668.12 BAD84729.1 - 0.0038 16.7 0.0 0.0085 15.6 0.0 1.5 1 0 0 1 1 1 1 HDOD domain Clp_N PF02861.20 BAD84729.1 - 0.024 14.7 0.0 0.093 12.9 0.0 2.0 1 0 0 1 1 1 0 Clp amino terminal domain, pathogenicity island component HTH_55 PF18622.1 BAD84729.1 - 0.12 12.7 0.0 0.35 11.2 0.0 1.8 1 0 0 1 1 1 0 RctB helix turn helix domain MoeA_N PF03453.17 BAD84730.1 - 1.6e-46 157.9 0.4 2.5e-46 157.3 0.4 1.3 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoeA_C PF03454.15 BAD84730.1 - 1.8e-18 66.5 0.1 8.1e-18 64.4 0.0 2.2 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) MoCF_biosynth PF00994.24 BAD84730.1 - 1.1e-17 64.0 0.0 2.9e-17 62.7 0.0 1.7 1 1 0 1 1 1 1 Probable molybdopterin binding domain PIN PF01850.21 BAD84731.1 - 2.3e-13 50.7 0.0 1.1e-12 48.5 0.0 1.8 1 1 0 1 1 1 1 PIN domain MoCF_biosynth PF00994.24 BAD84733.1 - 3.8e-33 114.2 0.4 4.6e-33 113.9 0.4 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain TPP_enzyme_N PF02776.18 BAD84733.1 - 0.047 13.3 0.1 0.95 9.1 0.0 2.4 1 1 2 3 3 3 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AdoMet_Synthase PF01941.19 BAD84734.1 - 1.7e-178 593.4 5.5 2e-178 593.2 5.5 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) S-AdoMet_synt_N PF00438.20 BAD84734.1 - 0.025 15.3 0.3 0.16 12.7 0.0 2.5 3 0 0 3 3 3 0 S-adenosylmethionine synthetase, N-terminal domain Metallophos_2 PF12850.7 BAD84736.1 - 1.4e-21 77.4 0.0 2e-21 76.9 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 BAD84736.1 - 5.2e-21 76.1 0.0 1.1e-20 75.0 0.0 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 BAD84736.1 - 9.4e-19 67.7 1.3 1.7e-11 44.0 0.1 2.4 2 1 1 3 3 3 2 Metallophosphoesterase, calcineurin superfamily Epimerase_2 PF02350.19 BAD84736.1 - 0.11 11.3 0.0 0.2 10.5 0.0 1.3 1 0 0 1 1 1 0 UDP-N-acetylglucosamine 2-epimerase Aminotran_1_2 PF00155.21 BAD84737.1 - 1.5e-78 264.6 0.0 1.7e-78 264.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 BAD84737.1 - 6.5e-09 35.6 0.0 9.7e-09 35.0 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 BAD84737.1 - 4.3e-06 25.9 0.0 1.7e-05 23.9 0.0 1.7 2 0 0 2 2 2 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 BAD84737.1 - 9.7e-06 24.4 0.0 1.6e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 BAD84737.1 - 0.0016 17.8 0.0 0.0025 17.2 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Rsbr_N PF08678.10 BAD84737.1 - 0.0028 17.7 0.0 0.021 14.9 0.0 2.1 2 0 0 2 2 2 1 Rsbr N terminal Radical_SAM PF04055.21 BAD84737.1 - 0.069 13.5 0.2 2.3 8.6 0.0 2.8 3 0 0 3 3 3 0 Radical SAM superfamily Carbam_trans_C PF16861.5 BAD84738.1 - 9.1e-63 210.9 0.0 1.3e-62 210.4 0.0 1.2 1 0 0 1 1 1 1 Carbamoyltransferase C-terminus Carbam_trans_N PF02543.15 BAD84738.1 - 2.9e-50 171.9 0.8 2.2e-38 132.8 0.2 2.1 1 1 1 2 2 2 2 Carbamoyltransferase N-terminus Peptidase_M22 PF00814.25 BAD84738.1 - 1.2e-05 25.2 0.2 0.00038 20.2 0.0 2.3 2 0 0 2 2 2 1 Glycoprotease family BcrAD_BadFG PF01869.20 BAD84738.1 - 0.027 14.0 0.2 0.16 11.4 0.0 2.1 2 0 0 2 2 2 0 BadF/BadG/BcrA/BcrD ATPase family Lar_N PF09861.9 BAD84738.1 - 0.1 11.8 0.0 0.19 10.8 0.0 1.4 1 0 0 1 1 1 0 Lactate racemase N-terminal domain tRNA-synt_2b PF00587.25 BAD84739.1 - 7e-24 84.8 0.1 1.5e-23 83.7 0.1 1.6 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 BAD84739.1 - 1.1e-23 83.2 0.9 2.2e-23 82.2 0.9 1.5 1 0 0 1 1 1 1 Anticodon binding domain ProRS-C_1 PF09180.11 BAD84739.1 - 1.2e-18 67.0 1.2 1.3e-17 63.8 1.2 2.3 2 0 0 2 2 2 1 Prolyl-tRNA synthetase, C-terminal TIR_2 PF13676.6 BAD84739.1 - 0.00049 20.7 0.0 0.0018 18.9 0.0 2.0 1 0 0 1 1 1 1 TIR domain ProRS-C_2 PF09181.10 BAD84739.1 - 0.025 14.7 0.2 0.083 13.0 0.2 1.9 1 0 0 1 1 1 0 Prolyl-tRNA synthetase, C-terminal Rad50_zn_hook PF04423.14 BAD84739.1 - 0.11 12.4 0.9 0.44 10.4 0.9 2.1 1 0 0 1 1 1 0 Rad50 zinc hook motif 2-Hacid_dh_C PF02826.19 BAD84740.1 - 3.7e-54 182.8 0.0 1.6e-53 180.7 0.0 1.8 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 BAD84740.1 - 3.4e-35 120.6 0.0 4e-35 120.4 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain F420_oxidored PF03807.17 BAD84740.1 - 1.4e-08 35.2 0.0 3.3e-08 34.0 0.0 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 BAD84740.1 - 1e-07 32.2 0.0 2.1e-07 31.2 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.12 BAD84740.1 - 3.5e-07 29.9 0.2 1.6e-06 27.8 0.0 2.1 3 0 0 3 3 3 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain Shikimate_DH PF01488.20 BAD84740.1 - 8.7e-05 22.6 0.0 0.00045 20.3 0.0 2.0 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase NAD_Gly3P_dh_N PF01210.23 BAD84740.1 - 0.00039 20.4 0.3 0.0046 16.9 0.3 2.3 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AdoHcyase_NAD PF00670.21 BAD84740.1 - 0.0037 17.3 0.0 0.0086 16.2 0.0 1.6 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ApbA PF02558.16 BAD84740.1 - 0.018 14.7 0.0 0.038 13.6 0.0 1.6 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Rossmann-like PF10727.9 BAD84740.1 - 0.033 14.0 0.0 0.11 12.4 0.0 1.8 2 0 0 2 2 2 0 Rossmann-like domain ThiF PF00899.21 BAD84740.1 - 0.069 12.5 0.0 0.64 9.3 0.0 2.1 2 0 0 2 2 2 0 ThiF family DpaA_N PF16924.5 BAD84740.1 - 0.13 12.4 0.0 0.29 11.3 0.0 1.6 1 0 0 1 1 1 0 Dipicolinate synthase subunit A N-terminal domain DUF1743 PF08489.11 BAD84742.1 - 1.7e-36 124.8 0.0 2.8e-36 124.1 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) tRNA_anti-codon PF01336.25 BAD84742.1 - 1e-08 35.0 0.0 1.9e-08 34.1 0.0 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti_2 PF13742.6 BAD84742.1 - 6.4e-05 23.1 0.0 0.00013 22.1 0.0 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain Prok-RING_1 PF14446.6 BAD84742.1 - 0.0017 18.2 1.0 0.0029 17.5 1.0 1.3 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 TF_Zn_Ribbon PF08271.12 BAD84742.1 - 0.014 14.9 1.4 0.031 13.8 1.4 1.6 1 0 0 1 1 1 0 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.11 BAD84742.1 - 0.017 15.0 0.8 0.031 14.2 0.8 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain C1_2 PF03107.16 BAD84742.1 - 0.077 13.3 0.2 0.12 12.7 0.2 1.3 1 0 0 1 1 1 0 C1 domain RNA_POL_M_15KD PF02150.16 BAD84742.1 - 0.11 12.4 3.6 0.21 11.5 3.6 1.4 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit Ribosomal_S27 PF01599.19 BAD84742.1 - 0.14 12.3 3.2 0.24 11.6 2.5 1.8 2 0 0 2 2 2 0 Ribosomal protein S27a Zn_Tnp_IS1595 PF12760.7 BAD84742.1 - 1.6 8.8 4.3 3.2 7.8 4.3 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Methyltrn_RNA_2 PF04013.12 BAD84743.1 - 1.4e-53 181.6 0.0 1.5e-53 181.4 0.0 1.0 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase IF-2B PF01008.17 BAD84745.1 - 1.3e-81 273.9 0.0 1.7e-81 273.6 0.0 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family NTPase_1 PF03266.15 BAD84746.1 - 2.8e-56 190.0 0.2 3.3e-56 189.8 0.2 1.0 1 0 0 1 1 1 1 NTPase DUF2478 PF10649.9 BAD84746.1 - 4.2e-09 36.2 0.1 2.1e-08 34.0 0.1 1.8 1 1 0 1 1 1 1 Protein of unknown function (DUF2478) AAA_16 PF13191.6 BAD84746.1 - 1.5e-05 25.4 0.1 2.6e-05 24.7 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 BAD84746.1 - 3.3e-05 24.2 0.4 0.00019 21.7 0.4 2.2 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 BAD84746.1 - 0.00019 21.8 0.0 0.00054 20.4 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 BAD84746.1 - 0.00021 21.8 0.1 0.00053 20.5 0.1 1.7 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 BAD84746.1 - 0.00037 20.3 0.6 0.0012 18.6 0.6 1.8 1 1 0 1 1 1 1 AAA domain NACHT PF05729.12 BAD84746.1 - 0.00051 20.0 0.0 0.00083 19.3 0.0 1.3 1 0 0 1 1 1 1 NACHT domain AAA_19 PF13245.6 BAD84746.1 - 0.00099 19.5 0.2 0.0074 16.6 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.14 BAD84746.1 - 0.0014 18.6 0.8 0.034 14.1 0.6 2.5 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) RuvB_N PF05496.12 BAD84746.1 - 0.0032 17.2 0.2 0.2 11.4 0.0 2.4 2 1 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_33 PF13671.6 BAD84746.1 - 0.0037 17.4 0.0 0.0071 16.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 BAD84746.1 - 0.0047 16.9 0.1 0.011 15.7 0.0 1.6 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_24 PF13479.6 BAD84746.1 - 0.0047 16.7 0.0 0.026 14.3 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.6 BAD84746.1 - 0.0053 17.2 0.1 0.0092 16.4 0.1 1.4 1 0 0 1 1 1 1 AAA domain MeaB PF03308.16 BAD84746.1 - 0.0063 15.5 0.6 0.0099 14.9 0.6 1.4 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_28 PF13521.6 BAD84746.1 - 0.0068 16.7 0.1 0.01 16.1 0.1 1.3 1 0 0 1 1 1 1 AAA domain cobW PF02492.19 BAD84746.1 - 0.0074 15.9 0.1 0.041 13.5 0.1 1.9 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_14 PF13173.6 BAD84746.1 - 0.009 16.0 0.3 0.1 12.6 0.3 2.5 1 1 0 1 1 1 1 AAA domain NB-ARC PF00931.22 BAD84746.1 - 0.01 15.1 0.0 0.016 14.4 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain PhoH PF02562.16 BAD84746.1 - 0.018 14.5 0.3 0.026 14.0 0.3 1.3 1 1 0 1 1 1 0 PhoH-like protein MobB PF03205.14 BAD84746.1 - 0.019 14.8 0.2 0.042 13.8 0.0 1.6 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B IstB_IS21 PF01695.17 BAD84746.1 - 0.024 14.4 0.1 2.2 8.0 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein ATP_bind_1 PF03029.17 BAD84746.1 - 0.033 14.0 0.0 0.055 13.3 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein SRP54 PF00448.22 BAD84746.1 - 0.035 13.7 0.0 0.18 11.4 0.0 2.0 1 1 0 1 1 1 0 SRP54-type protein, GTPase domain RNA_helicase PF00910.22 BAD84746.1 - 0.036 14.4 0.0 0.084 13.3 0.0 1.6 2 0 0 2 2 1 0 RNA helicase ATPase PF06745.13 BAD84746.1 - 0.058 12.7 0.0 0.1 11.9 0.0 1.4 1 1 0 1 1 1 0 KaiC AAA_7 PF12775.7 BAD84746.1 - 0.1 12.1 0.0 0.18 11.3 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region TniB PF05621.11 BAD84746.1 - 0.11 11.9 0.0 8.4 5.8 0.0 2.1 2 0 0 2 2 2 0 Bacterial TniB protein T2SSE PF00437.20 BAD84746.1 - 0.11 11.5 0.1 0.3 10.1 0.0 1.8 1 1 1 2 2 2 0 Type II/IV secretion system protein AAA_2 PF07724.14 BAD84746.1 - 0.12 12.5 0.1 2 8.5 0.1 2.2 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) RsgA_GTPase PF03193.16 BAD84746.1 - 0.14 12.0 0.0 0.2 11.5 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase Bac_DnaA PF00308.18 BAD84746.1 - 0.15 11.9 0.0 16 5.3 0.0 2.1 2 0 0 2 2 2 0 Bacterial dnaA protein ABC_tran PF00005.27 BAD84746.1 - 0.17 12.4 0.0 0.31 11.6 0.0 1.5 1 0 0 1 1 1 0 ABC transporter AAA_29 PF13555.6 BAD84746.1 - 0.18 11.6 0.0 0.39 10.5 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Roc PF08477.13 BAD84746.1 - 0.21 11.8 0.0 0.37 11.0 0.0 1.4 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase AAA_32 PF13654.6 BAD84746.1 - 0.22 10.3 0.0 0.3 9.8 0.0 1.1 1 0 0 1 1 1 0 AAA domain CBS PF00571.28 BAD84747.1 - 1.7e-27 95.6 8.2 3.3e-13 49.9 0.3 2.2 2 0 0 2 2 2 2 CBS domain DUF1788 PF08747.11 BAD84747.1 - 0.014 15.4 0.0 0.02 14.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1788) RNA_pol_Rpb2_2 PF04561.14 BAD84747.1 - 0.019 14.6 0.0 0.025 14.2 0.0 1.3 1 0 0 1 1 1 0 RNA polymerase Rpb2, domain 2 DUF2318 PF10080.9 BAD84747.1 - 0.038 14.1 0.5 0.076 13.1 0.5 1.5 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) Sigma70_r1_1 PF03979.14 BAD84747.1 - 0.052 13.6 3.1 4.5 7.4 2.5 2.4 1 1 0 1 1 1 0 Sigma-70 factor, region 1.1 zf-Sec23_Sec24 PF04810.15 BAD84747.1 - 0.057 13.5 0.6 0.14 12.3 0.6 1.7 1 1 0 1 1 1 0 Sec23/Sec24 zinc finger DUF4428 PF14471.6 BAD84747.1 - 0.059 13.3 1.6 0.15 12.0 1.6 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4428) DUF512 PF04459.12 BAD84747.1 - 0.064 12.5 0.4 0.41 9.9 0.5 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF512) zinc-ribbon_6 PF10005.9 BAD84747.1 - 0.091 13.5 0.0 0.14 12.8 0.0 1.3 1 0 0 1 1 1 0 zinc-ribbon domain Rubredoxin_2 PF18073.1 BAD84747.1 - 0.1 12.4 0.9 2.1 8.1 0.0 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain HTH_20 PF12840.7 BAD84748.1 - 1e-11 44.7 0.0 1.6e-11 44.1 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 BAD84748.1 - 2.3e-11 43.4 0.2 4.7e-11 42.4 0.2 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 BAD84748.1 - 6.9e-08 31.9 0.3 1.6e-07 30.7 0.3 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 BAD84748.1 - 8.3e-08 31.9 0.0 1.4e-07 31.1 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 BAD84748.1 - 6e-07 29.3 0.0 1.3e-06 28.1 0.0 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 BAD84748.1 - 2.7e-06 27.2 0.3 5.1e-06 26.3 0.3 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF742 PF05331.11 BAD84748.1 - 3e-05 23.8 0.1 0.00085 19.1 0.0 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF742) MarR PF01047.22 BAD84748.1 - 9.1e-05 22.3 0.0 0.00017 21.4 0.0 1.4 1 0 0 1 1 1 1 MarR family Sigma70_r4 PF04545.16 BAD84748.1 - 0.0002 20.8 0.1 0.00062 19.2 0.1 1.9 1 0 0 1 1 1 1 Sigma-70, region 4 Fe_dep_repress PF01325.19 BAD84748.1 - 0.00045 20.4 0.1 0.001 19.2 0.1 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.6 BAD84748.1 - 0.00064 20.2 0.1 0.0015 19.0 0.1 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain Sigma70_r4_2 PF08281.12 BAD84748.1 - 0.0013 18.3 0.5 0.0035 17.0 0.0 2.0 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_23 PF13384.6 BAD84748.1 - 0.0034 17.1 0.0 0.01 15.6 0.0 1.8 1 0 0 1 1 1 1 Homeodomain-like domain GerE PF00196.19 BAD84748.1 - 0.007 15.9 0.2 0.023 14.2 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family HTH_38 PF13936.6 BAD84748.1 - 0.013 15.3 0.7 0.022 14.5 0.7 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain CENP-B_N PF04218.13 BAD84748.1 - 0.019 14.6 0.3 0.069 12.8 0.1 2.1 2 1 0 2 2 2 0 CENP-B N-terminal DNA-binding domain DprA_WH PF17782.1 BAD84748.1 - 0.023 14.8 0.0 0.04 14.0 0.0 1.4 1 0 0 1 1 1 0 DprA winged helix domain HTH_11 PF08279.12 BAD84748.1 - 0.025 14.5 0.5 0.057 13.4 0.1 1.8 2 0 0 2 2 2 0 HTH domain HTH_10 PF04967.12 BAD84748.1 - 0.036 13.9 0.1 0.098 12.5 0.0 1.8 2 0 0 2 2 1 0 HTH DNA binding domain HTH_28 PF13518.6 BAD84748.1 - 0.07 13.3 0.1 0.21 11.8 0.0 2.0 2 0 0 2 2 1 0 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 BAD84748.1 - 0.082 12.3 0.0 0.22 11.0 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 Alba PF01918.21 BAD84749.1 - 2e-21 75.6 0.9 2.5e-21 75.3 0.9 1.1 1 0 0 1 1 1 1 Alba Rpp20 PF12328.8 BAD84749.1 - 0.0053 16.7 0.1 0.0054 16.7 0.1 1.3 1 0 0 1 1 1 1 Rpp20 subunit of nuclear RNase MRP and P Lyase_1 PF00206.20 BAD84750.1 - 6.9e-58 196.5 0.3 9.4e-58 196.1 0.3 1.1 1 0 0 1 1 1 1 Lyase ADSL_C PF10397.9 BAD84750.1 - 1.5e-20 73.5 0.8 1e-19 70.8 0.3 2.4 2 0 0 2 2 2 1 Adenylosuccinate lyase C-terminus ASL_C PF08328.11 BAD84750.1 - 5.5e-09 36.1 0.2 1.7e-08 34.6 0.2 1.9 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminal DUF134 PF02001.16 BAD84751.1 - 2.3e-27 95.4 0.0 2.6e-27 95.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF134 Sigma70_r4 PF04545.16 BAD84751.1 - 4.2e-09 35.8 0.1 6.3e-09 35.2 0.1 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.12 BAD84751.1 - 2.1e-08 33.7 0.1 2.9e-08 33.3 0.1 1.2 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.6 BAD84751.1 - 1.3e-05 24.8 0.0 2.2e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_ECF PF07638.11 BAD84751.1 - 0.00017 21.6 0.3 0.00021 21.3 0.3 1.1 1 0 0 1 1 1 1 ECF sigma factor HTH_31 PF13560.6 BAD84751.1 - 0.00055 20.2 0.0 0.00063 20.0 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_1 PF00126.27 BAD84751.1 - 0.0062 16.5 0.1 0.0089 16.0 0.1 1.2 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_11 PF08279.12 BAD84751.1 - 0.011 15.6 0.0 0.016 15.2 0.0 1.3 1 0 0 1 1 1 0 HTH domain HTH_38 PF13936.6 BAD84751.1 - 0.012 15.4 0.0 0.021 14.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_3 PF01381.22 BAD84751.1 - 0.02 14.9 0.0 0.036 14.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix HTH_24 PF13412.6 BAD84751.1 - 0.022 14.3 0.0 0.03 13.9 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 BAD84751.1 - 0.026 14.5 0.0 0.036 14.0 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain MarR_2 PF12802.7 BAD84751.1 - 0.046 13.6 0.0 0.072 13.0 0.0 1.2 1 0 0 1 1 1 0 MarR family HTH_Tnp_4 PF13613.6 BAD84751.1 - 0.049 13.4 0.0 0.065 13.0 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease TnsD PF15978.5 BAD84751.1 - 0.18 10.8 0.0 0.22 10.5 0.0 1.0 1 0 0 1 1 1 0 Tn7-like transposition protein D HTH_29 PF13551.6 BAD84751.1 - 0.2 11.7 0.2 0.2 11.7 0.2 1.9 2 0 0 2 2 2 0 Winged helix-turn helix PTPS PF01242.19 BAD84752.1 - 1.8e-28 98.9 0.1 2.6e-28 98.4 0.1 1.2 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase DUF1615 PF07759.12 BAD84752.1 - 0.15 11.3 0.0 0.18 11.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1615) DUF296 PF03479.15 BAD84754.1 - 5e-25 88.0 0.0 5.6e-25 87.8 0.0 1.0 1 0 0 1 1 1 1 Plants and Prokaryotes Conserved (PCC) domain DEAD PF00270.29 BAD84755.1 - 2.9e-25 89.0 0.0 1.2e-24 87.1 0.0 2.0 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 BAD84755.1 - 2.5e-14 53.6 0.0 8.2e-14 51.9 0.0 1.9 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 BAD84755.1 - 5.2e-08 33.1 0.0 1.1e-07 32.0 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.23 BAD84755.1 - 0.016 14.0 0.0 0.063 12.0 0.0 1.7 2 1 0 2 2 2 0 SNF2 family N-terminal domain HTH_24 PF13412.6 BAD84756.1 - 1.2e-14 53.6 2.3 1.7e-14 53.1 1.2 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 BAD84756.1 - 2e-14 53.1 1.0 3.7e-14 52.3 1.0 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.21 BAD84756.1 - 5.1e-09 36.0 0.0 1.1e-08 34.9 0.0 1.6 1 1 0 1 1 1 1 Lrp/AsnC ligand binding domain MarR PF01047.22 BAD84756.1 - 1.3e-07 31.5 0.1 3.4e-07 30.1 0.0 1.7 2 0 0 2 2 1 1 MarR family HTH_20 PF12840.7 BAD84756.1 - 1.3e-06 28.4 0.1 2.4e-06 27.5 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 BAD84756.1 - 9.9e-06 25.4 0.1 1.9e-05 24.4 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 BAD84756.1 - 1.9e-05 24.5 0.2 4.2e-05 23.4 0.2 1.6 1 0 0 1 1 1 1 HTH domain HTH_IclR PF09339.10 BAD84756.1 - 2.3e-05 24.1 0.1 4e-05 23.3 0.1 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain Sigma70_r4 PF04545.16 BAD84756.1 - 0.00098 18.6 0.4 0.0026 17.2 0.4 1.8 1 0 0 1 1 1 1 Sigma-70, region 4 LexA_DNA_bind PF01726.16 BAD84756.1 - 0.0015 18.3 0.1 0.004 16.9 0.1 1.8 1 1 0 1 1 1 1 LexA DNA binding domain HTH_Crp_2 PF13545.6 BAD84756.1 - 0.003 17.5 0.0 0.0079 16.2 0.0 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Thr_dehydrat_C PF00585.18 BAD84756.1 - 0.0035 17.1 0.2 0.0059 16.4 0.2 1.3 1 0 0 1 1 1 1 C-terminal regulatory domain of Threonine dehydratase HTH_5 PF01022.20 BAD84756.1 - 0.004 17.0 0.1 0.007 16.2 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Dcc1 PF09724.9 BAD84756.1 - 0.0049 16.2 0.0 0.0065 15.8 0.0 1.3 1 1 0 1 1 1 1 Sister chromatid cohesion protein Dcc1 HTH_DeoR PF08220.12 BAD84756.1 - 0.0078 15.9 0.1 0.014 15.1 0.1 1.3 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_Mga PF08280.11 BAD84756.1 - 0.013 15.5 0.0 0.036 14.1 0.0 1.7 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain Fe_dep_repress PF01325.19 BAD84756.1 - 0.015 15.5 0.0 0.045 14.0 0.0 1.8 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_9 PF08221.11 BAD84756.1 - 0.016 15.3 0.0 0.081 13.0 0.0 2.0 2 0 0 2 2 2 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_38 PF13936.6 BAD84756.1 - 0.03 14.1 1.5 0.037 13.8 0.2 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_28 PF13518.6 BAD84756.1 - 0.046 13.9 0.1 0.092 12.9 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_53 PF18606.1 BAD84756.1 - 0.049 13.3 0.1 0.1 12.2 0.1 1.5 1 0 0 1 1 1 0 Zap helix turn helix N-terminal domain TrmB PF01978.19 BAD84756.1 - 0.052 13.4 0.1 0.12 12.3 0.1 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_3 PF01381.22 BAD84756.1 - 0.056 13.5 0.3 0.13 12.4 0.1 1.7 2 0 0 2 2 1 0 Helix-turn-helix FeoC PF09012.10 BAD84756.1 - 0.059 13.4 0.0 0.12 12.5 0.0 1.5 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_31 PF13560.6 BAD84756.1 - 0.065 13.6 0.2 0.16 12.3 0.2 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_CodY PF08222.11 BAD84756.1 - 0.077 12.6 0.0 0.14 11.7 0.0 1.5 1 0 0 1 1 1 0 CodY helix-turn-helix domain HTH_27 PF13463.6 BAD84756.1 - 0.081 13.4 0.1 0.22 12.0 0.0 1.8 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_WhiA PF02650.14 BAD84756.1 - 0.15 12.4 0.2 2.8 8.3 0.0 2.3 2 1 0 2 2 2 0 WhiA C-terminal HTH domain tRNA-synt_1b PF00579.25 BAD84757.1 - 1.4e-44 152.6 0.2 2.6e-44 151.7 0.2 1.4 1 1 0 1 1 1 1 tRNA synthetases class I (W and Y) DUF4350 PF14258.6 BAD84758.1 - 0.0003 21.1 0.0 0.001 19.5 0.0 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4350) ABC_transp_aux PF09822.9 BAD84758.1 - 0.0044 16.5 0.0 0.0062 16.0 0.0 1.3 1 0 0 1 1 1 1 ABC-type uncharacterized transport system SBP_bac_8 PF13416.6 BAD84759.1 - 7.3e-20 71.9 1.7 7.3e-20 71.9 1.7 2.1 1 1 1 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 BAD84759.1 - 3.5e-17 62.6 0.6 3.5e-17 62.6 0.6 1.6 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 BAD84759.1 - 2.4e-16 60.6 4.5 2.4e-16 60.6 4.5 1.7 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 BAD84759.1 - 8.2e-05 22.4 0.0 0.00022 21.1 0.0 1.7 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SHOCT PF09851.9 BAD84759.1 - 0.062 13.1 0.4 0.062 13.1 0.4 2.0 2 0 0 2 2 2 0 Short C-terminal domain FBPase_glpX PF03320.13 BAD84759.1 - 0.12 11.2 0.0 0.2 10.5 0.0 1.2 1 0 0 1 1 1 0 Bacterial fructose-1,6-bisphosphatase, glpX-encoded BPD_transp_1 PF00528.22 BAD84760.1 - 1.3e-23 83.7 42.4 1.2e-13 51.2 17.1 4.3 2 2 2 4 4 4 2 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 BAD84761.1 - 3.3e-35 121.6 0.0 5.2e-35 120.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 BAD84761.1 - 3.7e-08 33.4 0.2 3.3e-07 30.4 0.1 2.4 2 0 0 2 2 2 1 TOBE domain AAA_21 PF13304.6 BAD84761.1 - 1.9e-06 27.9 0.1 0.0022 17.8 0.0 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA PF00004.29 BAD84761.1 - 0.0024 18.3 0.2 0.099 13.1 0.0 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.22 BAD84761.1 - 0.003 17.9 0.0 0.0063 16.9 0.0 1.5 1 0 0 1 1 1 1 RNA helicase Rad17 PF03215.15 BAD84761.1 - 0.0059 16.5 0.0 0.0098 15.8 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_22 PF13401.6 BAD84761.1 - 0.0076 16.5 1.7 0.09 13.1 1.7 2.2 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 BAD84761.1 - 0.012 15.2 0.0 0.59 9.7 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 BAD84761.1 - 0.023 14.9 0.6 0.36 11.0 0.2 2.2 2 0 0 2 2 2 0 AAA domain TniB PF05621.11 BAD84761.1 - 0.027 13.9 0.4 0.32 10.4 0.1 2.1 2 0 0 2 2 2 0 Bacterial TniB protein AAA_16 PF13191.6 BAD84761.1 - 0.05 14.0 0.0 0.095 13.1 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain AAA_23 PF13476.6 BAD84761.1 - 0.072 13.6 0.3 0.15 12.5 0.2 1.5 1 1 0 1 1 1 0 AAA domain AAA_7 PF12775.7 BAD84761.1 - 0.1 12.1 0.0 0.18 11.3 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_30 PF13604.6 BAD84761.1 - 0.12 12.1 0.0 0.57 9.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 BAD84761.1 - 0.14 12.1 0.1 0.56 10.1 0.0 1.8 2 0 0 2 2 2 0 RsgA GTPase DUF447 PF04289.12 BAD84762.1 - 4e-35 121.2 0.0 4.6e-35 121.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF447) Metallophos PF00149.28 BAD84763.1 - 8.8e-05 23.1 2.5 0.00016 22.2 2.5 1.5 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Big_3_4 PF13754.6 BAD84763.1 - 0.0053 16.5 0.0 0.083 12.6 0.0 2.8 3 0 0 3 3 3 1 Domain of unknown function Metallophos_2 PF12850.7 BAD84763.1 - 0.08 13.1 0.5 0.21 11.8 0.5 1.8 1 1 0 1 1 1 0 Calcineurin-like phosphoesterase superfamily domain BrnA_antitoxin PF14384.6 BAD84764.1 - 0.00033 21.1 0.0 0.00057 20.3 0.0 1.4 1 0 0 1 1 1 1 BrnA antitoxin of type II toxin-antitoxin system CcdA PF07362.12 BAD84764.1 - 0.00049 20.5 0.0 0.00076 19.9 0.0 1.2 1 0 0 1 1 1 1 Post-segregation antitoxin CcdA DUF3408 PF11888.8 BAD84764.1 - 0.079 13.1 0.2 0.18 11.9 0.1 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF3408) GTF2I PF02946.14 BAD84765.1 - 0.17 12.0 0.3 0.31 11.1 0.0 1.6 2 0 0 2 2 2 0 GTF2I-like repeat DprA_WH PF17782.1 BAD84770.1 - 2e-05 24.6 0.0 2.5e-05 24.3 0.0 1.1 1 0 0 1 1 1 1 DprA winged helix domain TrmB PF01978.19 BAD84770.1 - 0.00034 20.4 0.0 0.00043 20.1 0.0 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 BAD84770.1 - 0.0062 16.3 0.0 0.0073 16.1 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.7 BAD84770.1 - 0.0072 16.4 0.0 0.0081 16.2 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 BAD84770.1 - 0.017 15.0 0.0 0.02 14.8 0.0 1.1 1 0 0 1 1 1 0 MarR family HTH_24 PF13412.6 BAD84770.1 - 0.018 14.6 0.0 0.02 14.4 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_9 PF08221.11 BAD84770.1 - 0.031 14.4 0.0 0.038 14.1 0.0 1.2 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_5 PF01022.20 BAD84770.1 - 0.052 13.4 0.0 0.057 13.3 0.0 1.3 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_47 PF16221.5 BAD84770.1 - 0.065 12.8 0.0 0.074 12.6 0.0 1.1 1 0 0 1 1 1 0 winged helix-turn-helix SelB-wing_2 PF09106.11 BAD84770.1 - 0.067 13.4 0.0 0.091 13.0 0.0 1.4 1 1 0 1 1 1 0 Elongation factor SelB, winged helix HTH_AsnC-type PF13404.6 BAD84770.1 - 0.07 13.0 0.0 0.1 12.5 0.0 1.3 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_27 PF13463.6 BAD84770.1 - 0.14 12.7 0.0 0.15 12.6 0.0 1.1 1 0 0 1 1 1 0 Winged helix DNA-binding domain LexA_DNA_bind PF01726.16 BAD84770.1 - 0.15 11.8 0.0 0.18 11.6 0.0 1.2 1 0 0 1 1 1 0 LexA DNA binding domain DUF4423 PF14394.6 BAD84770.1 - 0.17 11.6 0.0 0.19 11.5 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) PCNA_N PF00705.18 BAD84771.1 - 7.2e-14 51.6 0.1 2e-13 50.2 0.1 1.7 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.15 BAD84771.1 - 2.3e-08 34.3 0.1 7.5e-07 29.4 0.0 2.3 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, C-terminal domain Rad9 PF04139.13 BAD84771.1 - 2e-05 24.2 0.1 7.7e-05 22.3 0.1 1.8 2 0 0 2 2 2 1 Rad9 TFIIE_alpha PF02002.17 BAD84776.1 - 0.96 9.3 4.7 0.79 9.6 0.5 2.6 2 0 0 2 2 2 0 TFIIE alpha subunit MazE_antitoxin PF04014.18 BAD84777.1 - 0.00065 19.6 0.3 0.0022 17.9 0.0 1.9 2 0 0 2 2 2 1 Antidote-toxin recognition MazE, bacterial antitoxin CDC48_N PF02359.18 BAD84777.1 - 0.0031 17.7 0.1 0.0059 16.7 0.1 1.5 1 1 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain Rho_RNA_bind PF07497.12 BAD84777.1 - 0.016 15.0 0.1 0.72 9.8 0.0 2.2 1 1 1 2 2 2 0 Rho termination factor, RNA-binding domain CSD2 PF17876.1 BAD84777.1 - 0.022 14.9 0.3 1 9.6 0.1 2.6 1 1 2 3 3 3 0 Cold shock domain PrlF_antitoxin PF15937.5 BAD84777.1 - 0.029 14.8 0.0 1 9.8 0.0 2.3 2 0 0 2 2 2 0 prlF antitoxin for toxin YhaV_toxin HAS-barrel PF09378.10 BAD84777.1 - 0.034 14.3 0.8 2.1 8.6 0.1 2.3 1 1 1 2 2 2 0 HAS barrel domain DUF902 PF06001.13 BAD84778.1 - 0.057 13.9 1.0 0.1 13.1 1.0 1.4 1 0 0 1 1 1 0 Domain of Unknown Function (DUF902) AIPR PF10592.9 BAD84778.1 - 0.066 12.8 0.4 0.07 12.8 0.4 1.1 1 0 0 1 1 1 0 AIPR protein Acetyltransf_1 PF00583.25 BAD84780.1 - 1.5e-05 25.2 0.0 4.9e-05 23.5 0.0 2.0 2 1 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 BAD84780.1 - 0.00015 22.1 0.0 0.00032 21.0 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 BAD84780.1 - 0.001 19.0 0.0 0.002 18.1 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.6 BAD84780.1 - 0.036 14.0 0.0 0.11 12.6 0.0 1.8 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase Acetyltransf_CG PF14542.6 BAD84780.1 - 0.047 13.8 0.0 0.16 12.1 0.0 1.8 2 0 0 2 2 2 0 GCN5-related N-acetyl-transferase DNA_ligase_ZBD PF03119.16 BAD84780.1 - 0.11 12.5 0.1 0.26 11.3 0.1 1.7 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain PepSY_like PF11396.8 BAD84780.1 - 0.22 12.1 1.6 4 8.1 0.0 2.7 2 0 0 2 2 2 0 Putative beta-lactamase-inhibitor-like, PepSY-like ScsC_N PF18312.1 BAD84781.1 - 0.14 11.9 0.9 0.42 10.5 0.9 1.8 1 0 0 1 1 1 0 Copper resistance protein ScsC N-terminal domain PepSY PF03413.19 BAD84782.1 - 0.069 13.7 0.1 0.3 11.7 0.0 2.1 2 0 0 2 2 2 0 Peptidase propeptide and YPEB domain DUF2968 PF11180.8 BAD84782.1 - 0.13 11.9 0.1 0.25 10.9 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2968) EMP24_GP25L PF01105.24 BAD84785.1 - 0.055 13.4 0.1 0.097 12.6 0.1 1.3 1 0 0 1 1 1 0 emp24/gp25L/p24 family/GOLD Frankia_peptide PF14407.6 BAD84787.1 - 0.03 14.3 0.0 0.044 13.8 0.0 1.2 1 0 0 1 1 1 0 Ribosomally synthesized peptide prototyped by Frankia Franean1_4349. AAA_16 PF13191.6 BAD84790.1 - 6.6e-10 39.6 0.0 1.6e-05 25.3 0.0 2.2 2 0 0 2 2 2 2 AAA ATPase domain DUF87 PF01935.17 BAD84790.1 - 7e-07 29.6 0.2 0.0043 17.2 0.0 2.4 2 0 0 2 2 2 2 Helicase HerA, central domain AAA_22 PF13401.6 BAD84790.1 - 1.3e-06 28.7 0.0 0.0026 18.0 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_10 PF12846.7 BAD84790.1 - 1.9e-06 27.1 0.1 0.0046 15.9 0.0 2.1 2 0 0 2 2 2 2 AAA-like domain AAA_14 PF13173.6 BAD84790.1 - 9.4e-05 22.5 0.1 0.17 11.9 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA PF00004.29 BAD84790.1 - 0.0003 21.2 0.1 0.0029 18.0 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.27 BAD84790.1 - 0.00059 20.4 0.0 0.0016 19.0 0.0 1.7 2 0 0 2 2 1 1 ABC transporter RuvB_N PF05496.12 BAD84790.1 - 0.0008 19.2 0.0 0.0021 17.8 0.0 1.6 2 0 0 2 2 1 1 Holliday junction DNA helicase RuvB P-loop domain TrwB_AAD_bind PF10412.9 BAD84790.1 - 0.0012 17.9 0.0 0.017 14.1 0.0 2.0 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain ResIII PF04851.15 BAD84790.1 - 0.0019 18.3 0.1 0.0045 17.0 0.1 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_28 PF13521.6 BAD84790.1 - 0.0025 18.0 0.0 0.0049 17.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 BAD84790.1 - 0.0061 17.1 0.0 0.018 15.6 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 BAD84790.1 - 0.0061 16.3 0.0 0.018 14.7 0.0 1.7 2 0 0 2 2 2 1 AAA domain NB-ARC PF00931.22 BAD84790.1 - 0.011 15.0 0.0 0.017 14.3 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain RNA_helicase PF00910.22 BAD84790.1 - 0.013 15.9 0.0 0.045 14.1 0.0 2.0 2 0 0 2 2 1 0 RNA helicase ATPase_2 PF01637.18 BAD84790.1 - 0.013 15.4 0.4 0.062 13.2 0.1 2.1 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_29 PF13555.6 BAD84790.1 - 0.014 15.1 0.0 0.034 13.9 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF815 PF05673.13 BAD84790.1 - 0.017 14.3 0.0 0.031 13.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_23 PF13476.6 BAD84790.1 - 0.019 15.5 0.4 0.044 14.3 0.0 1.9 2 1 0 2 2 2 0 AAA domain Bac_DnaA PF00308.18 BAD84790.1 - 0.021 14.6 0.0 0.038 13.8 0.0 1.4 1 0 0 1 1 1 0 Bacterial dnaA protein AAA_35 PF14516.6 BAD84790.1 - 0.024 13.5 0.1 2.5 6.9 0.0 2.1 2 0 0 2 2 2 0 AAA-like domain PRK PF00485.18 BAD84790.1 - 0.028 14.1 0.0 0.045 13.5 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family PduV-EutP PF10662.9 BAD84790.1 - 0.042 13.6 0.1 0.64 9.7 0.0 2.5 3 0 0 3 3 2 0 Ethanolamine utilisation - propanediol utilisation RsgA_GTPase PF03193.16 BAD84790.1 - 0.046 13.6 0.0 0.073 13.0 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase NACHT PF05729.12 BAD84790.1 - 0.047 13.6 0.0 0.16 11.9 0.0 1.8 2 0 0 2 2 2 0 NACHT domain Cytidylate_kin PF02224.18 BAD84790.1 - 0.055 13.2 0.0 0.15 11.8 0.0 1.7 2 0 0 2 2 2 0 Cytidylate kinase AAA_7 PF12775.7 BAD84790.1 - 0.056 12.9 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_33 PF13671.6 BAD84790.1 - 0.057 13.6 0.0 0.12 12.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.18 BAD84790.1 - 0.07 12.5 0.0 0.16 11.3 0.0 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family G-alpha PF00503.20 BAD84790.1 - 0.076 12.2 0.0 0.13 11.4 0.0 1.4 1 0 0 1 1 1 0 G-protein alpha subunit PhoH PF02562.16 BAD84790.1 - 0.095 12.1 0.0 0.51 9.8 0.0 1.9 2 0 0 2 2 2 0 PhoH-like protein RNA_pol_Rpb4 PF03874.16 BAD84790.1 - 0.1 13.0 0.1 0.33 11.3 0.0 1.8 2 0 0 2 2 2 0 RNA polymerase Rpb4 TsaE PF02367.17 BAD84790.1 - 0.13 12.3 0.0 0.25 11.4 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE T2SSE PF00437.20 BAD84790.1 - 0.13 11.3 0.0 0.2 10.6 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein Rad17 PF03215.15 BAD84790.1 - 0.14 12.1 0.0 1.2 9.0 0.0 2.3 2 0 0 2 2 2 0 Rad17 P-loop domain SMC_N PF02463.19 BAD84790.1 - 0.19 11.1 0.0 1.8 7.9 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain Viral_helicase1 PF01443.18 BAD84790.1 - 0.21 11.3 0.0 0.49 10.1 0.0 1.6 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_19 PF13245.6 BAD84790.1 - 0.21 11.9 0.0 0.82 10.0 0.0 1.8 2 0 0 2 2 2 0 AAA domain ZapB PF06005.12 BAD84791.1 - 1.9e-06 28.2 25.4 7.4e-05 23.1 9.4 2.4 2 0 0 2 2 2 2 Cell division protein ZapB CD34_antigen PF06365.12 BAD84791.1 - 2.2e-05 24.2 2.4 3.4e-05 23.5 2.4 1.4 1 0 0 1 1 1 1 CD34/Podocalyxin family HALZ PF02183.18 BAD84791.1 - 2.5e-05 24.4 24.9 0.0059 16.8 8.0 3.9 2 2 2 4 4 4 2 Homeobox associated leucine zipper DUF484 PF04340.12 BAD84791.1 - 2.9e-05 23.9 2.9 4.4e-05 23.3 2.9 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF484 KASH_CCD PF14662.6 BAD84791.1 - 0.00028 20.8 23.7 0.0007 19.5 23.7 1.6 1 1 0 1 1 1 1 Coiled-coil region of CCDC155 or KASH GAS PF13851.6 BAD84791.1 - 0.00037 19.9 23.3 0.00053 19.4 23.3 1.1 1 0 0 1 1 1 1 Growth-arrest specific micro-tubule binding RasGAP_C PF03836.15 BAD84791.1 - 0.00041 20.5 8.2 0.00041 20.5 8.2 2.3 1 1 1 2 2 2 1 RasGAP C-terminus Leu_zip PF15294.6 BAD84791.1 - 0.0009 18.8 17.7 0.0019 17.8 17.7 1.5 1 0 0 1 1 1 1 Leucine zipper DUF4515 PF14988.6 BAD84791.1 - 0.0012 18.7 26.5 0.041 13.7 8.7 2.9 1 1 2 3 3 3 2 Domain of unknown function (DUF4515) DivIC PF04977.15 BAD84791.1 - 0.0014 18.3 29.1 0.027 14.2 4.0 3.6 1 1 2 3 3 3 2 Septum formation initiator bZIP_1 PF00170.21 BAD84791.1 - 0.0021 18.1 25.2 0.18 11.9 4.3 4.1 1 1 3 4 4 4 3 bZIP transcription factor Jnk-SapK_ap_N PF09744.9 BAD84791.1 - 0.0025 18.1 17.6 0.0036 17.5 17.6 1.2 1 0 0 1 1 1 1 JNK_SAPK-associated protein-1 Atg14 PF10186.9 BAD84791.1 - 0.0031 16.6 16.1 0.0054 15.9 16.1 1.3 1 0 0 1 1 1 1 Vacuolar sorting 38 and autophagy-related subunit 14 RRM_3 PF08777.11 BAD84791.1 - 0.0032 17.5 0.4 0.0032 17.5 0.4 2.2 1 1 2 3 3 3 1 RNA binding motif LMBR1 PF04791.16 BAD84791.1 - 0.0034 16.3 3.4 0.0051 15.8 3.4 1.3 1 0 0 1 1 1 1 LMBR1-like membrane protein GIT_CC PF16559.5 BAD84791.1 - 0.0062 16.4 5.9 0.0062 16.4 5.9 2.6 1 1 2 3 3 3 1 GIT coiled-coil Rho guanine nucleotide exchange factor CENP-F_leu_zip PF10473.9 BAD84791.1 - 0.0065 16.5 21.2 0.11 12.5 6.7 2.2 1 1 1 2 2 2 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 TMCO5 PF14992.6 BAD84791.1 - 0.0068 16.0 18.8 0.029 14.0 18.1 1.9 1 1 1 2 2 2 1 TMCO5 family TSC22 PF01166.18 BAD84791.1 - 0.012 15.9 5.5 0.012 15.9 5.5 3.2 1 1 2 3 3 3 0 TSC-22/dip/bun family Spc7 PF08317.11 BAD84791.1 - 0.016 14.1 20.8 0.024 13.5 20.8 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein Nucleoporin_FG2 PF15967.5 BAD84791.1 - 0.016 13.7 3.4 0.021 13.4 3.4 1.1 1 0 0 1 1 1 0 Nucleoporin FG repeated region STAT_alpha PF01017.20 BAD84791.1 - 0.017 15.0 10.8 0.12 12.3 2.5 2.2 2 0 0 2 2 2 0 STAT protein, all-alpha domain Cnn_1N PF07989.11 BAD84791.1 - 0.017 15.3 23.2 0.028 14.6 11.9 3.4 1 1 2 3 3 3 0 Centrosomin N-terminal motif 1 DivIVA PF05103.13 BAD84791.1 - 0.022 14.9 4.4 0.022 14.9 4.4 3.1 1 1 2 3 3 3 0 DivIVA protein DUF4407 PF14362.6 BAD84791.1 - 0.023 14.0 10.8 0.036 13.4 10.8 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) Ax_dynein_light PF10211.9 BAD84791.1 - 0.026 14.5 21.7 0.12 12.4 8.9 2.3 1 1 1 2 2 2 0 Axonemal dynein light chain bZIP_2 PF07716.15 BAD84791.1 - 0.031 14.4 29.2 0.92 9.6 1.6 4.4 2 1 2 4 4 4 0 Basic region leucine zipper FapA PF03961.13 BAD84791.1 - 0.032 12.8 15.9 0.0045 15.7 10.5 1.8 1 1 1 2 2 2 0 Flagellar Assembly Protein A MAD PF05557.13 BAD84791.1 - 0.032 12.6 18.2 0.042 12.2 18.2 1.1 1 0 0 1 1 1 0 Mitotic checkpoint protein Nup54 PF13874.6 BAD84791.1 - 0.039 14.1 16.1 0.17 12.0 11.4 2.1 1 1 1 2 2 2 0 Nucleoporin complex subunit 54 SHE3 PF17078.5 BAD84791.1 - 0.044 13.5 17.1 0.077 12.7 17.1 1.3 1 0 0 1 1 1 0 SWI5-dependent HO expression protein 3 Rho_Binding PF08912.11 BAD84791.1 - 0.053 14.3 26.7 0.11 13.4 5.0 3.9 1 1 3 4 4 4 0 Rho Binding TPR_MLP1_2 PF07926.12 BAD84791.1 - 0.059 13.4 24.4 0.1 12.7 24.4 1.4 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein Chordopox_A13L PF05961.11 BAD84791.1 - 0.069 13.4 0.2 0.069 13.4 0.2 2.5 2 1 1 3 3 1 0 Chordopoxvirus A13L protein FlaC_arch PF05377.11 BAD84791.1 - 0.079 13.4 9.7 0.18 12.2 3.5 3.0 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) DUF2730 PF10805.8 BAD84791.1 - 0.082 13.0 5.1 0.2 11.7 4.5 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF2730) TACC_C PF05010.14 BAD84791.1 - 0.09 12.6 19.1 1 9.1 7.5 2.1 1 1 1 2 2 2 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal YabA PF06156.13 BAD84791.1 - 0.1 13.3 20.8 1.4 9.6 6.4 2.3 1 1 1 2 2 2 0 Initiation control protein YabA DUF2935 PF11155.8 BAD84791.1 - 0.11 12.9 10.3 0.059 13.7 6.4 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF2935) Prefoldin_2 PF01920.20 BAD84791.1 - 0.12 12.4 17.8 0.53 10.3 6.6 2.6 2 1 0 2 2 2 0 Prefoldin subunit Spc24 PF08286.11 BAD84791.1 - 0.13 12.5 21.2 0.46 10.7 8.7 2.5 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 Cep57_MT_bd PF06657.13 BAD84791.1 - 0.15 12.5 13.6 0.089 13.3 3.6 2.4 1 1 1 2 2 2 0 Centrosome microtubule-binding domain of Cep57 Cep57_CLD PF14073.6 BAD84791.1 - 0.15 12.0 20.8 0.83 9.6 18.9 2.1 1 1 1 2 2 2 0 Centrosome localisation domain of Cep57 Prominin PF05478.11 BAD84791.1 - 0.17 9.8 10.8 0.32 8.9 10.8 1.4 1 0 0 1 1 1 0 Prominin HAP1_N PF04849.13 BAD84791.1 - 0.18 11.0 17.0 0.096 11.9 14.7 1.6 1 1 0 1 1 1 0 HAP1 N-terminal conserved region Exonuc_VII_L PF02601.15 BAD84791.1 - 0.18 11.3 12.1 0.26 10.8 12.1 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit HMMR_C PF15908.5 BAD84791.1 - 0.19 12.0 14.1 0.45 10.8 4.9 2.4 1 1 1 2 2 2 0 Hyaluronan mediated motility receptor C-terminal Hemerythrin PF01814.23 BAD84791.1 - 0.19 12.3 1.8 8.7 7.0 0.1 2.7 1 1 2 3 3 3 0 Hemerythrin HHE cation binding domain MIS13 PF08202.11 BAD84791.1 - 0.2 10.9 11.4 0.25 10.6 11.4 1.1 1 0 0 1 1 1 0 Mis12-Mtw1 protein family CorA PF01544.18 BAD84791.1 - 0.21 10.9 8.5 0.26 10.6 7.7 1.5 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein DHR10 PF18595.1 BAD84791.1 - 0.22 11.6 23.1 1.3 9.1 6.3 2.2 1 1 1 2 2 2 0 Designed helical repeat protein 10 domain ATG16 PF08614.11 BAD84791.1 - 0.22 11.7 21.8 0.59 10.3 21.8 1.6 1 1 0 1 1 1 0 Autophagy protein 16 (ATG16) CENP-H PF05837.12 BAD84791.1 - 0.23 11.9 24.0 1.3 9.5 11.5 2.5 1 1 1 2 2 2 0 Centromere protein H (CENP-H) ZYG-11_interact PF05884.12 BAD84791.1 - 0.23 10.8 3.5 0.68 9.3 3.5 1.7 1 1 0 1 1 1 0 Interactor of ZYG-11 Syntaxin_2 PF14523.6 BAD84791.1 - 0.23 11.8 17.2 0.22 11.9 11.3 2.4 1 1 1 2 2 2 0 Syntaxin-like protein Shugoshin_N PF07558.11 BAD84791.1 - 0.24 11.3 17.3 0.69 9.8 2.6 3.5 3 0 0 3 3 3 0 Shugoshin N-terminal coiled-coil region DUF724 PF05266.14 BAD84791.1 - 0.28 11.0 12.5 0.47 10.3 12.4 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF724) Uso1_p115_C PF04871.13 BAD84791.1 - 0.3 11.5 28.5 1.5 9.2 10.4 2.2 1 1 1 2 2 2 0 Uso1 / p115 like vesicle tethering protein, C terminal region Fez1 PF06818.15 BAD84791.1 - 0.32 11.4 16.4 0.5 10.8 16.4 1.2 1 0 0 1 1 1 0 Fez1 ETRAMP PF09716.10 BAD84791.1 - 0.33 11.1 9.4 8.4 6.5 9.4 2.8 1 1 0 1 1 1 0 Malarial early transcribed membrane protein (ETRAMP) DUF3450 PF11932.8 BAD84791.1 - 0.35 10.1 19.9 1.6 7.9 6.0 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF3450) Syntaxin PF00804.25 BAD84791.1 - 0.41 10.3 11.7 0.79 9.4 11.7 1.5 1 1 0 1 1 1 0 Syntaxin GrpE PF01025.19 BAD84791.1 - 0.45 10.2 23.1 0.67 9.6 7.3 2.2 1 1 1 2 2 2 0 GrpE DUF1664 PF07889.12 BAD84791.1 - 0.47 10.5 14.1 0.56 10.2 2.3 3.2 2 1 1 3 3 3 0 Protein of unknown function (DUF1664) DUF4763 PF15960.5 BAD84791.1 - 0.5 9.6 15.8 5.9 6.1 16.0 2.2 1 1 0 1 1 1 0 Domain of unknown function (DUF4763) DUF2913 PF11140.8 BAD84791.1 - 0.5 10.1 13.1 2.3 7.9 2.8 2.5 2 1 1 3 3 2 0 Protein of unknown function (DUF2913) TMF_TATA_bd PF12325.8 BAD84791.1 - 0.56 10.5 19.4 4.1 7.7 7.0 2.4 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding Occludin_ELL PF07303.13 BAD84791.1 - 0.57 10.9 14.9 3 8.6 2.9 2.5 1 1 1 2 2 2 0 Occludin homology domain Herpes_BLRF2 PF05812.12 BAD84791.1 - 0.61 10.2 17.1 0.49 10.5 3.1 3.1 1 1 2 3 3 3 0 Herpesvirus BLRF2 protein Cep57_CLD_2 PF14197.6 BAD84791.1 - 0.69 10.0 19.6 1.1 9.4 8.3 2.5 1 1 1 2 2 2 0 Centrosome localisation domain of PPC89 DUF4140 PF13600.6 BAD84791.1 - 0.71 10.4 10.8 3e+02 1.9 10.1 2.7 1 1 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) SlyX PF04102.12 BAD84791.1 - 0.71 10.5 14.8 0.69 10.6 6.1 3.2 1 1 2 3 3 3 0 SlyX Snapin_Pallidin PF14712.6 BAD84791.1 - 0.72 10.3 16.6 3.2 8.2 3.1 2.7 1 1 2 3 3 3 0 Snapin/Pallidin Sec34 PF04136.15 BAD84791.1 - 0.73 9.7 12.5 3.7 7.4 1.6 2.2 1 1 1 2 2 2 0 Sec34-like family JAKMIP_CC3 PF16034.5 BAD84791.1 - 0.83 9.6 16.6 1.9 8.4 16.6 1.5 1 1 0 1 1 1 0 JAKMIP CC3 domain NYD-SP28_assoc PF14775.6 BAD84791.1 - 0.86 9.8 25.4 5.4 7.2 3.5 4.3 2 2 2 4 4 4 0 Sperm tail C-terminal domain DUF4201 PF13870.6 BAD84791.1 - 0.92 9.2 22.8 2.5 7.8 22.8 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4201) Tropomyosin_1 PF12718.7 BAD84791.1 - 1 9.5 24.3 3.9 7.6 24.3 1.8 1 1 0 1 1 1 0 Tropomyosin like ADIP PF11559.8 BAD84791.1 - 1 9.4 25.5 2.7 8.1 8.8 2.2 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding kleA_kleC PF17383.2 BAD84791.1 - 1.2 9.5 9.1 2.6 8.4 1.3 2.4 1 1 1 2 2 2 0 Uncharacterized KorC regulated protein A Nnf1 PF03980.14 BAD84791.1 - 1.2 9.5 16.3 0.084 13.3 1.9 3.1 2 1 1 3 3 3 0 Nnf1 UPF0242 PF06785.11 BAD84791.1 - 1.2 9.2 22.9 1.7 8.7 8.3 2.2 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus Tup_N PF08581.10 BAD84791.1 - 1.3 9.4 13.5 1.9 8.9 5.6 2.5 1 1 1 2 2 2 0 Tup N-terminal APG6_N PF17675.1 BAD84791.1 - 1.3 9.6 27.1 1.5 9.4 19.2 2.6 1 1 1 2 2 2 0 Apg6 coiled-coil region APC_N_CC PF16689.5 BAD84791.1 - 1.3 9.1 12.4 0.22 11.6 7.0 2.2 2 0 0 2 2 2 0 Coiled-coil N-terminus of APC, dimerisation domain Borrelia_REV PF03978.13 BAD84791.1 - 1.6 8.7 14.0 0.34 10.8 8.0 2.3 1 1 1 2 2 2 0 Borrelia burgdorferi REV protein Nup88 PF10168.9 BAD84791.1 - 1.6 6.4 15.2 2.2 6.0 15.2 1.1 1 0 0 1 1 1 0 Nuclear pore component Hormone_1 PF00103.20 BAD84791.1 - 1.7 8.3 10.1 1.5 8.5 2.5 2.1 1 1 1 2 2 2 0 Somatotropin hormone family Vma12 PF11712.8 BAD84791.1 - 1.8 8.7 11.3 0.21 11.7 0.8 2.3 1 1 1 2 2 2 0 Endoplasmic reticulum-based factor for assembly of V-ATPase Acetyltransf_11 PF13720.6 BAD84791.1 - 1.9 9.0 3.9 20 5.7 3.8 2.3 1 1 0 1 1 1 0 Udp N-acetylglucosamine O-acyltransferase; Domain 2 Mod_r PF07200.13 BAD84791.1 - 2.1 8.4 24.4 0.73 9.9 8.7 2.2 1 1 1 2 2 2 0 Modifier of rudimentary (Mod(r)) protein Mto2_bdg PF12808.7 BAD84791.1 - 2.3 8.6 19.6 1.5 9.1 2.3 3.5 2 1 1 3 3 3 0 Micro-tubular organiser Mto1 C-term Mto2-binding region DASH_Spc34 PF08657.10 BAD84791.1 - 2.9 7.6 17.1 0.88 9.3 4.3 2.2 1 1 1 2 2 2 0 DASH complex subunit Spc34 Mgr1 PF08602.10 BAD84791.1 - 2.9 6.6 14.7 0.2 10.4 3.9 2.1 1 1 1 2 2 2 0 Mgr1-like, i-AAA protease complex subunit TMPIT PF07851.13 BAD84791.1 - 3.1 6.9 18.3 1.7 7.8 12.1 1.9 1 1 1 2 2 2 0 TMPIT-like protein FlxA PF14282.6 BAD84791.1 - 3.3 7.7 23.1 7.4 6.6 6.3 2.4 1 1 1 2 2 2 0 FlxA-like protein FAD-SLDH PF12318.8 BAD84791.1 - 3.6 7.6 6.7 14 5.7 0.7 2.3 1 1 1 2 2 2 0 Membrane bound FAD containing D-sorbitol dehydrogenase Macoilin PF09726.9 BAD84791.1 - 4.2 5.8 19.8 51 2.2 19.8 1.8 1 1 0 1 1 1 0 Macoilin family Seryl_tRNA_N PF02403.22 BAD84791.1 - 4.4 7.6 21.0 1.2 9.4 12.5 2.4 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Sulfatase_C PF14707.6 BAD84791.1 - 4.4 8.1 7.0 11 6.8 1.8 2.2 1 1 1 2 2 2 0 C-terminal region of aryl-sulfatase PRKG1_interact PF15898.5 BAD84791.1 - 4.8 8.2 21.3 11 6.9 7.8 2.6 1 1 1 2 2 2 0 cGMP-dependent protein kinase interacting domain TolA_bind_tri PF16331.5 BAD84791.1 - 5.3 7.2 15.8 3.8 7.7 10.9 2.5 1 1 1 2 2 2 0 TolA binding protein trimerisation AcylCoA_dehyd_C PF12186.8 BAD84791.1 - 5.4 7.2 9.3 9.2 6.4 1.1 2.9 1 1 1 3 3 3 0 Acyl-CoA dehydrogenase C terminal BLOC1_2 PF10046.9 BAD84791.1 - 5.5 7.4 18.6 1.6 9.1 6.6 2.5 1 1 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Phage_GPO PF05929.11 BAD84791.1 - 5.5 6.5 13.8 0.36 10.4 4.5 2.1 1 1 1 2 2 2 0 Phage capsid scaffolding protein (GPO) serine peptidase Fmp27_WPPW PF10359.9 BAD84791.1 - 5.9 5.6 15.2 12 4.6 15.2 1.4 1 1 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain PI_PP_I PF18363.1 BAD84791.1 - 6.4 7.0 7.8 12 6.1 1.0 2.4 1 1 1 2 2 2 0 Phosphoinositide phosphatase insertion domain NPV_P10 PF05531.12 BAD84791.1 - 6.6 7.3 8.7 1.3e+02 3.2 8.6 2.6 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein bZIP_Maf PF03131.17 BAD84791.1 - 6.6 7.3 14.9 8.7 6.9 4.6 2.7 1 1 2 3 3 2 0 bZIP Maf transcription factor CLZ PF16526.5 BAD84791.1 - 7.1 7.1 14.2 5.4 7.4 5.9 2.6 1 1 1 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels HAUS6_N PF14661.6 BAD84791.1 - 7.3 6.1 15.8 8.5 5.9 7.1 2.3 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 6 N-terminus XhlA PF10779.9 BAD84791.1 - 7.7 6.8 9.1 2.4 8.4 2.9 2.6 1 1 2 3 3 3 0 Haemolysin XhlA TMF_DNA_bd PF12329.8 BAD84791.1 - 8.4 6.5 30.5 0.3 11.1 11.2 3.4 2 1 1 3 3 3 0 TATA element modulatory factor 1 DNA binding Striatin PF08232.12 BAD84791.1 - 8.4 7.0 18.2 71 4.0 18.4 1.9 1 1 0 1 1 1 0 Striatin family Cortex-I_coil PF09304.10 BAD84791.1 - 8.5 6.6 17.1 6.3 7.1 3.8 2.4 1 1 1 2 2 2 0 Cortexillin I, coiled coil MctB PF11382.8 BAD84791.1 - 9 5.9 13.0 6.2 6.4 1.6 2.7 1 1 2 3 3 2 0 Copper transport outer membrane protein, MctB Syntaxin-6_N PF09177.11 BAD84791.1 - 9.3 6.9 11.8 6.9 7.3 6.2 2.4 1 1 1 2 2 2 0 Syntaxin 6, N-terminal V_ATPase_I PF01496.19 BAD84791.1 - 9.5 4.0 14.6 14 3.4 14.6 1.3 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family fn3_4 PF16794.5 BAD84794.1 - 0.039 13.9 0.1 0.1 12.5 0.0 1.7 2 0 0 2 2 2 0 Fibronectin-III type domain CBM39 PF15886.5 BAD84794.1 - 0.064 13.1 2.1 0.14 12.0 2.0 1.8 1 1 0 1 1 1 0 Carbohydrate binding domain (family 32) fn3 PF00041.21 BAD84794.1 - 0.6 10.5 5.0 0.44 10.9 0.6 2.6 2 1 1 3 3 3 0 Fibronectin type III domain GPI-anchored PF10342.9 BAD84794.1 - 8 7.3 12.9 0.94 10.3 0.9 3.0 1 1 2 3 3 3 0 Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family DUF373 PF04123.13 BAD84795.1 - 0.14 11.6 1.2 0.18 11.2 1.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF373) DUF805 PF05656.14 BAD84796.1 - 0.023 15.1 1.2 0.026 14.9 1.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF805) Glyco_transf_22 PF03901.17 BAD84796.1 - 0.061 12.5 0.9 0.063 12.5 0.9 1.1 1 0 0 1 1 1 0 Alg9-like mannosyltransferase family ABC2_membrane_3 PF12698.7 BAD84796.1 - 0.19 10.8 6.8 0.24 10.5 6.8 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF973 PF06157.11 BAD84796.1 - 0.29 10.1 2.8 0.29 10.1 2.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF973) DUF4396 PF14342.6 BAD84797.1 - 0.28 11.5 7.1 2.9 8.2 4.2 2.8 2 1 0 2 2 2 0 Domain of unknown function (DUF4396) DUF2583 PF10762.9 BAD84797.1 - 0.51 10.8 3.6 4 7.9 0.2 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF2583) TrbC PF04956.13 BAD84798.1 - 1.1 9.5 7.1 0.11 12.7 1.8 2.0 2 0 0 2 2 2 0 TrbC/VIRB2 family NSF PF02071.20 BAD84798.1 - 7.8 7.8 5.5 2.2e+02 3.4 0.1 4.3 3 0 0 3 3 3 0 Aromatic-di-Alanine (AdAR) repeat CarbopepD_reg_2 PF13715.6 BAD84799.1 - 5.3e-06 26.3 3.0 4.6e-05 23.3 0.1 3.2 3 0 0 3 3 3 1 CarboxypepD_reg-like domain PEGA PF08308.11 BAD84799.1 - 0.00031 20.6 2.2 0.0024 17.7 0.1 3.3 3 0 0 3 3 3 1 PEGA domain DUF3244 PF11589.8 BAD84799.1 - 0.0012 18.8 0.2 0.016 15.3 0.1 2.9 2 0 0 2 2 2 1 Domain of unknown function (DUF3244) CarboxypepD_reg PF13620.6 BAD84799.1 - 0.0041 17.4 8.3 0.015 15.6 0.2 4.5 4 1 0 4 4 4 1 Carboxypeptidase regulatory-like domain Invasin_D3 PF09134.10 BAD84799.1 - 0.0069 16.7 9.6 0.49 10.7 0.1 3.6 3 1 0 3 3 3 2 Invasin, domain 3 CBM_35 PF16990.5 BAD84799.1 - 0.065 13.5 3.7 0.71 10.1 0.1 3.5 3 1 1 4 4 4 0 Carbohydrate binding module (family 35) DUF756 PF05506.12 BAD84799.1 - 0.1 13.6 0.1 0.7 10.9 0.1 2.4 1 0 0 1 1 1 0 Domain of unknown function (DUF756) PHA_gran_rgn PF09650.10 BAD84799.1 - 0.19 12.0 0.1 29 5.0 0.0 2.8 2 0 0 2 2 2 0 Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn) RHH_1 PF01402.21 BAD84801.1 - 0.00054 19.8 0.0 0.00092 19.1 0.0 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family PSK_trans_fac PF07704.11 BAD84801.1 - 0.0046 17.7 0.1 0.0052 17.5 0.1 1.1 1 0 0 1 1 1 1 Rv0623-like transcription factor HicB PF05534.12 BAD84801.1 - 0.029 14.2 0.0 0.038 13.8 0.0 1.2 1 0 0 1 1 1 0 HicB family ParG PF09274.10 BAD84801.1 - 0.16 12.1 0.0 0.19 11.9 0.0 1.1 1 0 0 1 1 1 0 ParG Phage_integr_3 PF16795.5 BAD84803.1 - 2.6e-60 202.9 1.3 3.5e-60 202.5 0.3 1.7 2 0 0 2 2 2 1 Archaeal phage integrase FERM_F2 PF18377.1 BAD84803.1 - 0.12 12.3 0.6 9 6.2 0.0 2.8 3 0 0 3 3 3 0 FERM F2 acyl-CoA binding protein-like domain Ribosomal_L37ae PF01780.19 BAD84804.1 - 1.1e-33 115.2 5.5 1.1e-33 115.1 5.5 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family Zn_Tnp_IS1595 PF12760.7 BAD84804.1 - 6.8e-08 32.4 2.4 9.4e-08 31.9 2.4 1.2 1 0 0 1 1 1 1 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 BAD84804.1 - 0.0004 20.2 0.8 0.00056 19.8 0.8 1.3 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.10 BAD84804.1 - 0.00043 20.3 1.8 0.054 13.6 0.4 2.2 2 0 0 2 2 2 1 Zinc ribbon domain zf-RRN7 PF11781.8 BAD84804.1 - 0.0012 18.5 0.9 0.002 17.8 0.9 1.3 1 0 0 1 1 1 1 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Rep_fac-A_C PF08646.10 BAD84804.1 - 0.0036 17.0 0.2 0.0042 16.8 0.2 1.1 1 0 0 1 1 1 1 Replication factor-A C terminal domain ADK_lid PF05191.14 BAD84804.1 - 0.0046 16.9 0.4 3.3 7.8 0.1 2.2 2 0 0 2 2 2 2 Adenylate kinase, active site lid zf-H2C2_2 PF13465.6 BAD84804.1 - 0.0074 16.7 0.2 4.1 8.0 0.1 2.2 2 0 0 2 2 2 1 Zinc-finger double domain Lar_restr_allev PF14354.6 BAD84804.1 - 0.0085 16.5 0.4 0.012 15.9 0.4 1.4 1 0 0 1 1 1 1 Restriction alleviation protein Lar C1_1 PF00130.22 BAD84804.1 - 0.012 15.5 1.2 0.016 15.1 1.2 1.1 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DNA_ligase_ZBD PF03119.16 BAD84804.1 - 0.015 15.3 1.3 0.029 14.4 1.3 1.5 1 1 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain TF_Zn_Ribbon PF08271.12 BAD84804.1 - 0.017 14.6 0.1 0.025 14.1 0.1 1.3 1 0 0 1 1 1 0 TFIIB zinc-binding RPA_interact_C PF14768.6 BAD84804.1 - 0.023 15.2 0.1 0.029 14.9 0.1 1.2 1 0 0 1 1 1 0 Replication protein A interacting C-terminal zf-RING_13 PF17977.1 BAD84804.1 - 0.03 14.5 2.6 0.04 14.1 2.6 1.2 1 0 0 1 1 1 0 RING/Ubox like zinc-binding domain A2L_zn_ribbon PF08792.10 BAD84804.1 - 0.033 13.9 2.4 0.16 11.7 2.4 1.8 1 1 0 1 1 1 0 A2L zinc ribbon domain DUF4379 PF14311.6 BAD84804.1 - 0.033 14.5 2.3 3.4 8.1 0.1 2.3 2 0 0 2 2 2 0 Probable Zinc-ribbon domain zf-BED PF02892.15 BAD84804.1 - 0.037 14.1 1.7 2.6 8.1 0.1 2.2 1 1 1 2 2 2 0 BED zinc finger Nudix_N_2 PF14803.6 BAD84804.1 - 0.037 13.9 1.1 1.2 9.1 0.1 2.4 2 0 0 2 2 2 0 Nudix N-terminal zf-C2H2 PF00096.26 BAD84804.1 - 0.054 14.0 0.8 8.6 7.0 0.1 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type Rad50_zn_hook PF04423.14 BAD84804.1 - 0.069 13.0 0.3 0.11 12.3 0.3 1.3 1 0 0 1 1 1 0 Rad50 zinc hook motif zf-C2H2_4 PF13894.6 BAD84804.1 - 0.09 13.7 1.0 16 6.7 0.1 2.4 2 0 0 2 2 2 0 C2H2-type zinc finger Zn_ribbon_SprT PF17283.2 BAD84804.1 - 0.09 12.7 4.1 0.23 11.4 4.1 1.6 1 1 0 1 1 1 0 SprT-like zinc ribbon domain NOB1_Zn_bind PF08772.11 BAD84804.1 - 0.096 12.9 2.7 0.14 12.3 0.4 2.0 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like HalOD2 PF18547.1 BAD84804.1 - 0.1 12.5 4.0 0.23 11.4 3.9 1.7 1 1 0 1 1 1 0 Halobacterial output domain 2 zf-C2H2_6 PF13912.6 BAD84804.1 - 0.11 12.5 2.5 7.1 6.8 0.1 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger DZR PF12773.7 BAD84804.1 - 0.12 12.4 2.1 1.3 9.1 2.5 1.8 1 1 1 2 2 2 0 Double zinc ribbon Elf1 PF05129.13 BAD84804.1 - 0.13 12.3 1.7 0.24 11.4 1.7 1.5 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like Rubredoxin_2 PF18073.1 BAD84804.1 - 0.16 11.7 4.1 0.65 9.8 0.6 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain zf-C2HC_2 PF13913.6 BAD84804.1 - 0.22 11.5 4.7 2.8 7.9 0.6 2.3 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Ogr_Delta PF04606.12 BAD84804.1 - 0.27 11.2 3.4 2 8.5 0.2 2.3 1 1 1 2 2 2 0 Ogr/Delta-like zinc finger zf-C2H2_11 PF16622.5 BAD84804.1 - 0.69 9.7 0.2 0.69 9.7 0.2 2.0 2 0 0 2 2 2 0 zinc-finger C2H2-type Prim_Zn_Ribbon PF08273.12 BAD84804.1 - 0.86 9.9 7.0 3.1 8.2 7.0 1.9 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase zinc_ribbon_2 PF13240.6 BAD84804.1 - 0.89 9.4 4.8 11 5.9 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-tcix PF14952.6 BAD84804.1 - 0.94 9.1 5.7 0.53 9.9 0.5 2.3 1 1 1 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zf-ACC PF17848.1 BAD84804.1 - 1.4 9.1 6.7 12 6.1 1.7 2.2 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain DNA_RNApol_7kD PF03604.13 BAD84805.1 - 9.8e-11 41.1 4.1 1.4e-10 40.7 4.1 1.2 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit Zn-ribbon_8 PF09723.10 BAD84805.1 - 2e-06 27.8 0.5 2.7e-06 27.4 0.5 1.2 1 0 0 1 1 1 1 Zinc ribbon domain zinc_ribbon_2 PF13240.6 BAD84805.1 - 1.4e-05 24.6 0.5 0.079 12.7 0.1 2.1 2 0 0 2 2 2 2 zinc-ribbon domain zf-ribbon_3 PF13248.6 BAD84805.1 - 2.8e-05 23.3 0.7 0.0082 15.5 0.1 2.1 2 0 0 2 2 2 1 zinc-ribbon domain HypA PF01155.19 BAD84805.1 - 9.8e-05 22.3 0.5 0.00011 22.2 0.5 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Desulfoferrod_N PF06397.12 BAD84805.1 - 0.00047 19.7 0.5 0.0074 15.9 0.1 2.0 2 0 0 2 2 2 1 Desulfoferrodoxin, N-terminal domain Zn_Tnp_IS1595 PF12760.7 BAD84805.1 - 0.001 19.0 2.3 0.11 12.5 0.2 2.1 2 0 0 2 2 2 1 Transposase zinc-ribbon domain zf_UBZ PF18439.1 BAD84805.1 - 0.0016 18.0 0.6 0.15 11.7 0.0 2.1 2 0 0 2 2 2 1 Ubiquitin-Binding Zinc Finger DZR PF12773.7 BAD84805.1 - 0.0017 18.4 1.1 0.0031 17.5 1.1 1.6 1 1 0 1 1 1 1 Double zinc ribbon Cys_rich_CPXG PF14255.6 BAD84805.1 - 0.0019 18.0 0.6 0.49 10.3 0.2 2.1 2 0 0 2 2 2 1 Cysteine-rich CPXCG TF_Zn_Ribbon PF08271.12 BAD84805.1 - 0.0039 16.7 3.1 2.5 7.7 0.1 1.9 1 1 0 1 1 1 1 TFIIB zinc-binding Sgf11 PF08209.11 BAD84805.1 - 0.0056 16.2 0.9 1.7 8.3 0.1 2.2 2 0 0 2 2 2 1 Sgf11 (transcriptional regulation protein) YacG PF03884.14 BAD84805.1 - 0.0066 16.2 0.4 0.49 10.2 0.1 2.1 2 0 0 2 2 2 1 DNA gyrase inhibitor YacG CpXC PF14353.6 BAD84805.1 - 0.0079 16.2 1.2 1.2 9.2 0.1 2.0 1 1 1 2 2 2 1 CpXC protein TFIIS_C PF01096.18 BAD84805.1 - 0.0084 15.9 1.9 0.73 9.7 0.2 2.1 2 0 0 2 2 2 1 Transcription factor S-II (TFIIS) NOB1_Zn_bind PF08772.11 BAD84805.1 - 0.011 15.9 0.3 0.012 15.8 0.3 1.1 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like DUF3268 PF11672.8 BAD84805.1 - 0.013 15.8 1.7 0.44 10.9 0.1 2.0 1 1 1 2 2 2 0 zinc-finger-containing domain Nudix_N_2 PF14803.6 BAD84805.1 - 0.014 15.3 0.7 0.27 11.2 0.4 2.2 1 1 1 2 2 2 0 Nudix N-terminal OrfB_Zn_ribbon PF07282.11 BAD84805.1 - 0.014 15.3 1.3 0.023 14.6 1.2 1.4 1 1 0 1 1 1 0 Putative transposase DNA-binding domain DUF35_N PF12172.8 BAD84805.1 - 0.015 15.2 1.9 1.6 8.6 0.1 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn_Tnp_IS91 PF14319.6 BAD84805.1 - 0.015 15.3 0.2 0.015 15.3 0.2 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain zf-C2HC5 PF06221.13 BAD84805.1 - 0.015 15.2 0.5 0.026 14.5 0.5 1.4 1 1 0 1 1 1 0 Putative zinc finger motif, C2HC5-type RNHCP PF12647.7 BAD84805.1 - 0.016 15.2 0.2 0.017 15.1 0.2 1.1 1 0 0 1 1 1 0 RNHCP domain DUF951 PF06107.11 BAD84805.1 - 0.016 15.1 0.4 0.96 9.4 0.0 2.0 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF951) zinc_ribbon_9 PF14369.6 BAD84805.1 - 0.018 15.3 0.3 0.031 14.6 0.3 1.4 1 0 0 1 1 1 0 zinc-ribbon YhfH PF14149.6 BAD84805.1 - 0.019 14.9 0.8 2.9 8.0 0.2 2.1 2 0 0 2 2 2 0 YhfH-like protein zinc_ribbon_10 PF10058.9 BAD84805.1 - 0.019 14.7 0.7 2.3 8.0 0.1 2.1 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-ISL3 PF14690.6 BAD84805.1 - 0.02 15.6 2.3 0.19 12.4 0.5 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-C4_Topoisom PF01396.19 BAD84805.1 - 0.024 14.4 2.1 0.19 11.6 0.2 2.1 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-CHCC PF10276.9 BAD84805.1 - 0.024 14.7 0.1 0.024 14.7 0.1 1.7 2 0 0 2 2 2 0 Zinc-finger domain zinc_ribbon_4 PF13717.6 BAD84805.1 - 0.027 14.4 4.1 0.36 10.8 4.1 2.1 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.6 BAD84805.1 - 0.029 14.1 3.0 4 7.3 0.8 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF1451 PF07295.11 BAD84805.1 - 0.031 14.3 0.2 0.035 14.1 0.2 1.1 1 0 0 1 1 1 0 Zinc-ribbon containing domain zinc-ribbons_6 PF07191.12 BAD84805.1 - 0.032 14.2 0.7 0.043 13.8 0.7 1.3 1 1 0 1 1 1 0 zinc-ribbons zf-NADH-PPase PF09297.11 BAD84805.1 - 0.037 13.7 1.6 0.32 10.7 1.7 2.0 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain PknG_rubred PF16919.5 BAD84805.1 - 0.037 14.2 0.3 0.04 14.1 0.3 1.1 1 0 0 1 1 1 0 Protein kinase G rubredoxin domain zinc-ribbon_6 PF10005.9 BAD84805.1 - 0.042 14.5 0.1 0.052 14.2 0.1 1.2 1 0 0 1 1 1 0 zinc-ribbon domain Elf1 PF05129.13 BAD84805.1 - 0.045 13.8 0.4 0.063 13.3 0.4 1.4 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like Zn_ribbon_recom PF13408.6 BAD84805.1 - 0.051 14.1 1.7 1.5 9.4 0.1 2.1 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain Ribosomal_S27e PF01667.17 BAD84805.1 - 0.061 13.0 1.0 0.18 11.5 1.0 1.7 1 1 1 2 2 2 0 Ribosomal protein S27 Zn_ribbon_SprT PF17283.2 BAD84805.1 - 0.093 12.7 7.2 0.12 12.4 4.4 2.3 1 1 1 2 2 2 0 SprT-like zinc ribbon domain NRDD PF13597.6 BAD84805.1 - 0.097 11.4 0.3 0.093 11.5 0.3 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase zf-RING_7 PF02591.15 BAD84805.1 - 0.1 12.8 2.8 0.12 12.6 0.2 2.0 1 1 1 2 2 2 0 C4-type zinc ribbon domain Lar_restr_allev PF14354.6 BAD84805.1 - 0.1 13.0 1.5 4.6 7.7 2.1 2.0 1 1 1 2 2 2 0 Restriction alleviation protein Lar DNA_ligase_ZBD PF03119.16 BAD84805.1 - 0.13 12.3 5.5 0.4 10.7 0.2 2.9 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain PyrI_C PF02748.15 BAD84805.1 - 0.13 12.2 3.8 0.99 9.4 0.2 2.1 1 1 1 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain zf-Di19 PF05605.12 BAD84805.1 - 0.15 12.4 1.0 0.78 10.1 0.2 1.9 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding zf-C2H2 PF00096.26 BAD84805.1 - 0.19 12.3 2.7 9.9 6.8 0.3 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 BAD84805.1 - 0.24 11.9 1.8 8.8 7.0 0.1 2.1 2 0 0 2 2 2 0 Zinc-finger double domain zf-BED PF02892.15 BAD84805.1 - 0.48 10.5 3.4 2.8 8.0 0.1 2.1 1 1 1 2 2 2 0 BED zinc finger Rubredoxin_2 PF18073.1 BAD84805.1 - 0.76 9.6 5.4 2 8.2 0.3 2.1 2 0 0 2 2 2 0 Rubredoxin metal binding domain zf-tcix PF14952.6 BAD84805.1 - 1.4 8.6 6.3 6.3 6.5 0.1 2.8 3 0 0 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding LRR_10 PF18805.1 BAD84806.1 - 0.058 13.1 0.1 5.8 6.6 0.0 3.0 3 0 0 3 3 3 0 Leucine-rich repeat MNHE PF01899.16 BAD84807.1 - 3.6e-41 140.3 2.1 4.5e-41 140.0 2.1 1.1 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit MrpF_PhaF PF04066.13 BAD84808.1 - 5.6e-15 55.5 5.8 5.6e-15 55.5 5.8 1.9 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) PhaG_MnhG_YufB PF03334.14 BAD84809.1 - 1.1e-24 86.5 7.3 1.3e-24 86.2 7.3 1.0 1 0 0 1 1 1 1 Na+/H+ antiporter subunit DUF4040 PF13244.6 BAD84810.1 - 7.5e-10 38.8 8.7 9.1e-10 38.6 8.4 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4040) DUF2459 PF09601.10 BAD84811.1 - 0.16 11.8 0.1 0.2 11.4 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2459) MnhB PF04039.13 BAD84812.1 - 3.9e-26 91.8 12.2 4.6e-26 91.5 12.2 1.1 1 0 0 1 1 1 1 Domain related to MnhB subunit of Na+/H+ antiporter DUF1761 PF08570.10 BAD84812.1 - 0.028 14.7 1.2 0.028 14.7 1.2 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1761) DUF3180 PF11377.8 BAD84812.1 - 0.035 14.2 4.0 0.046 13.9 4.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3180) DUF3290 PF11694.8 BAD84812.1 - 0.15 12.1 0.2 0.3 11.0 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3290) MerC PF03203.14 BAD84812.1 - 0.21 12.0 2.8 0.94 9.9 2.8 1.9 1 1 0 1 1 1 0 MerC mercury resistance protein DUF2105 PF09878.9 BAD84812.1 - 0.3 10.8 6.8 0.45 10.2 6.8 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2105) DUF202 PF02656.15 BAD84812.1 - 0.44 11.0 8.1 5.2 7.6 2.6 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF202) Oxidored_q2 PF00420.24 BAD84813.1 - 4.7e-18 64.8 2.0 5.4e-18 64.5 2.0 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF4418 PF14387.6 BAD84813.1 - 0.00035 20.8 1.3 0.00056 20.1 1.3 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4418) LtrA PF06772.11 BAD84813.1 - 0.025 13.8 1.0 0.032 13.5 1.0 1.0 1 0 0 1 1 1 0 Bacterial low temperature requirement A protein (LtrA) DUF2108 PF09881.9 BAD84813.1 - 0.035 14.1 7.2 0.088 12.8 7.2 1.8 1 1 0 1 1 1 0 Predicted membrane protein (DUF2108) DUF4040 PF13244.6 BAD84813.1 - 0.27 11.4 6.4 0.4 10.9 0.2 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4040) DUF2107 PF09880.9 BAD84813.1 - 0.96 9.6 8.5 0.1 12.7 1.3 2.1 2 0 0 2 2 2 0 Predicted membrane protein (DUF2107) SPW PF03779.14 BAD84813.1 - 8.8 6.0 10.4 4.2 7.0 0.8 3.0 3 0 0 3 3 3 0 SPW repeat Proton_antipo_M PF00361.20 BAD84814.1 - 6.8e-52 176.5 18.3 6.8e-52 176.5 18.3 1.8 2 0 0 2 2 2 1 Proton-conducting membrane transporter NADHdeh_related PF10125.9 BAD84814.1 - 1e-07 31.6 1.7 1e-07 31.6 1.7 2.5 2 0 0 2 2 2 1 NADH dehydrogenase I, subunit N related protein ACT PF01842.25 BAD84815.1 - 6.4e-11 41.8 0.2 1.1e-10 41.1 0.2 1.4 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.6 BAD84815.1 - 3.7e-05 24.2 0.1 6.3e-05 23.5 0.1 1.3 1 0 0 1 1 1 1 ACT domain ACT_7 PF13840.6 BAD84815.1 - 0.043 13.6 0.0 0.095 12.5 0.0 1.5 1 0 0 1 1 1 0 ACT domain ACT_6 PF13740.6 BAD84815.1 - 0.071 13.1 0.1 0.46 10.5 0.1 2.2 1 1 0 1 1 1 0 ACT domain Na_H_Exchanger PF00999.21 BAD84816.1 - 1.3e-29 103.2 41.4 1.6e-29 102.9 41.4 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family DUF948 PF06103.11 BAD84817.1 - 0.0037 17.5 0.6 5.7 7.3 0.3 3.2 2 1 0 3 3 3 1 Bacterial protein of unknown function (DUF948) Spc7 PF08317.11 BAD84817.1 - 0.0044 16.0 3.9 0.0044 16.0 3.9 3.0 2 1 1 3 3 3 1 Spc7 kinetochore protein Cnn_1N PF07989.11 BAD84817.1 - 0.01 16.0 2.3 0.01 16.0 2.3 4.1 3 1 1 4 4 4 0 Centrosomin N-terminal motif 1 Baculo_PEP_C PF04513.12 BAD84817.1 - 0.01 15.9 1.6 0.8 9.7 0.1 3.1 2 1 1 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus TMF_DNA_bd PF12329.8 BAD84817.1 - 0.012 15.6 6.6 0.012 15.6 6.6 4.7 2 1 2 4 4 4 0 TATA element modulatory factor 1 DNA binding MM_CoA_mutase PF01642.22 BAD84817.1 - 0.012 14.2 1.2 0.019 13.5 0.4 1.6 2 0 0 2 2 2 0 Methylmalonyl-CoA mutase Phasin PF05597.11 BAD84817.1 - 0.022 14.7 3.8 0.022 14.7 3.8 3.4 2 1 2 4 4 4 0 Poly(hydroxyalcanoate) granule associated protein (phasin) Spectrin PF00435.21 BAD84817.1 - 0.023 15.2 15.7 0.72 10.4 7.5 3.6 2 1 0 3 3 3 0 Spectrin repeat Prefoldin PF02996.17 BAD84817.1 - 0.03 14.2 17.1 0.15 11.9 0.4 4.2 4 0 0 4 4 4 0 Prefoldin subunit Gp-FAR-1 PF05823.12 BAD84817.1 - 0.039 14.3 0.7 0.039 14.3 0.7 3.5 3 1 1 4 4 4 0 Nematode fatty acid retinoid binding protein (Gp-FAR-1) FBPase_2 PF06874.11 BAD84817.1 - 0.043 12.1 0.1 0.043 12.1 0.1 1.6 2 1 0 2 2 2 0 Firmicute fructose-1,6-bisphosphatase BLOC1_2 PF10046.9 BAD84817.1 - 0.065 13.5 17.1 12 6.3 7.4 4.3 3 1 0 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Bacillus_HBL PF05791.11 BAD84817.1 - 0.074 12.9 4.1 0.35 10.7 1.2 2.5 1 1 2 3 3 3 0 Bacillus haemolytic enterotoxin (HBL) Corona_S2 PF01601.16 BAD84817.1 - 0.13 10.7 0.0 0.28 9.6 0.0 1.5 2 0 0 2 2 2 0 Coronavirus S2 glycoprotein Prominin PF05478.11 BAD84817.1 - 0.13 10.2 7.4 0.083 10.8 5.3 1.7 2 0 0 2 2 2 0 Prominin DUF1664 PF07889.12 BAD84817.1 - 0.26 11.3 12.4 0.34 10.9 1.0 3.5 2 2 3 5 5 5 0 Protein of unknown function (DUF1664) NBP1 PF08537.10 BAD84817.1 - 0.43 10.0 15.3 0.82 9.0 15.3 1.4 1 0 0 1 1 1 0 Fungal Nap binding protein NBP1 DUF3584 PF12128.8 BAD84817.1 - 0.54 7.7 18.5 0.062 10.8 12.7 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3584) CorA PF01544.18 BAD84817.1 - 0.55 9.5 20.3 0.3 10.4 2.9 3.2 2 1 1 3 3 3 0 CorA-like Mg2+ transporter protein FlxA PF14282.6 BAD84817.1 - 1.2 9.2 11.3 0.29 11.2 0.9 3.2 2 1 2 4 4 4 0 FlxA-like protein SlyX PF04102.12 BAD84817.1 - 1.4 9.6 17.5 9.9 6.9 0.9 4.5 3 1 1 4 4 4 0 SlyX DUF2935 PF11155.8 BAD84817.1 - 1.4 9.2 9.6 12 6.2 0.1 3.1 2 1 0 3 3 3 0 Domain of unknown function (DUF2935) Fib_alpha PF08702.10 BAD84817.1 - 2.4 8.3 14.0 6.2 7.0 5.3 3.1 2 1 1 3 3 3 0 Fibrinogen alpha/beta chain family DUF4363 PF14276.6 BAD84817.1 - 3.6 7.8 15.8 8.5 6.5 1.8 3.9 3 1 1 4 4 4 0 Domain of unknown function (DUF4363) Exonuc_VII_L PF02601.15 BAD84817.1 - 3.8 7.0 12.9 4.1 6.9 11.0 2.0 2 1 0 2 2 2 0 Exonuclease VII, large subunit Syntaxin-6_N PF09177.11 BAD84817.1 - 3.8 8.1 19.3 4.7 7.8 11.8 3.8 2 1 2 4 4 4 0 Syntaxin 6, N-terminal YtxH PF12732.7 BAD84817.1 - 5.5 7.6 14.9 2.1e+02 2.5 9.3 4.1 2 1 0 2 2 2 0 YtxH-like protein COG5 PF10392.9 BAD84817.1 - 5.6 7.2 14.6 4.8 7.4 0.3 3.6 2 1 2 4 4 4 0 Golgi transport complex subunit 5 CheW PF01584.19 BAD84818.1 - 1.3e-36 125.2 0.5 1.6e-36 125.0 0.5 1.0 1 0 0 1 1 1 1 CheW-like domain MCPsignal PF00015.21 BAD84819.1 - 8.5e-45 152.6 37.6 6.2e-43 146.6 23.6 3.2 1 1 2 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF948 PF06103.11 BAD84819.1 - 3.3e-08 33.7 24.4 0.0078 16.4 1.0 5.7 1 1 5 6 6 6 5 Bacterial protein of unknown function (DUF948) Baculo_PEP_C PF04513.12 BAD84819.1 - 4.5e-07 30.0 27.1 0.00075 19.5 3.2 4.2 1 1 3 4 4 4 3 Baculovirus polyhedron envelope protein, PEP, C terminus EzrA PF06160.12 BAD84819.1 - 5.5e-07 28.2 23.1 0.00012 20.5 1.4 2.7 2 1 1 3 3 3 2 Septation ring formation regulator, EzrA DUF812 PF05667.11 BAD84819.1 - 5e-06 25.7 27.0 8e-05 21.7 14.5 2.1 1 1 1 2 2 2 2 Protein of unknown function (DUF812) Laminin_II PF06009.12 BAD84819.1 - 1.4e-05 25.2 30.9 0.00092 19.2 3.2 4.2 1 1 3 4 4 4 2 Laminin Domain II NPV_P10 PF05531.12 BAD84819.1 - 1.8e-05 25.1 24.2 0.1 13.0 2.2 5.8 2 2 2 4 4 4 1 Nucleopolyhedrovirus P10 protein DUF1664 PF07889.12 BAD84819.1 - 2.3e-05 24.4 29.3 0.051 13.6 3.5 4.8 2 2 3 5 5 5 3 Protein of unknown function (DUF1664) BLOC1_2 PF10046.9 BAD84819.1 - 3e-05 24.2 27.0 0.41 11.0 2.4 5.6 2 2 3 5 5 5 3 Biogenesis of lysosome-related organelles complex-1 subunit 2 Fib_alpha PF08702.10 BAD84819.1 - 5.6e-05 23.3 24.9 0.0018 18.5 1.7 4.3 2 2 2 4 4 4 3 Fibrinogen alpha/beta chain family Mce4_CUP1 PF11887.8 BAD84819.1 - 0.00018 21.1 11.5 0.0047 16.4 3.4 2.9 1 1 0 2 2 2 2 Cholesterol uptake porter CUP1 of Mce4, putative Spc7 PF08317.11 BAD84819.1 - 0.00027 20.0 27.1 0.00068 18.6 12.4 2.9 1 1 2 3 3 3 1 Spc7 kinetochore protein CREPT PF16566.5 BAD84819.1 - 0.00027 21.1 15.1 0.091 12.9 1.5 4.2 2 2 2 4 4 4 1 Cell-cycle alteration and expression-elevated protein in tumour Syntaxin_2 PF14523.6 BAD84819.1 - 0.00065 20.0 21.0 0.023 15.1 1.1 5.0 1 1 4 5 5 5 2 Syntaxin-like protein DASH_Dam1 PF08653.10 BAD84819.1 - 0.00069 19.4 10.0 2.2 8.2 0.1 5.7 6 0 0 6 6 5 0 DASH complex subunit Dam1 FlgN PF05130.12 BAD84819.1 - 0.00087 19.8 20.9 0.19 12.3 2.7 4.4 1 1 3 4 4 4 1 FlgN protein Seryl_tRNA_N PF02403.22 BAD84819.1 - 0.0019 18.4 26.5 0.65 10.2 3.1 4.4 1 1 3 4 4 4 2 Seryl-tRNA synthetase N-terminal domain Phasin_2 PF09361.10 BAD84819.1 - 0.0021 18.3 1.2 0.0021 18.3 1.2 3.9 2 2 1 4 4 3 1 Phasin protein Snapin_Pallidin PF14712.6 BAD84819.1 - 0.0023 18.3 17.9 1.1 9.7 2.8 4.4 2 2 2 4 4 4 2 Snapin/Pallidin Med30 PF11315.8 BAD84819.1 - 0.0043 17.2 16.0 0.026 14.7 1.2 3.4 1 1 0 2 2 2 1 Mediator complex subunit 30 Vps53_N PF04100.12 BAD84819.1 - 0.0045 16.0 3.7 0.0045 16.0 3.7 3.7 2 2 2 4 4 4 1 Vps53-like, N-terminal Lebercilin PF15619.6 BAD84819.1 - 0.0067 16.1 14.0 0.1 12.2 8.0 2.5 2 1 0 2 2 2 1 Ciliary protein causing Leber congenital amaurosis disease UvrD_C PF13361.6 BAD84819.1 - 0.0072 15.7 13.7 0.18 11.2 2.6 2.4 1 1 0 2 2 2 2 UvrD-like helicase C-terminal domain IFT57 PF10498.9 BAD84819.1 - 0.012 14.7 22.9 0.037 13.0 9.8 2.6 2 1 0 2 2 2 0 Intra-flagellar transport protein 57 Serine_rich PF08824.10 BAD84819.1 - 0.012 15.6 16.1 0.66 10.0 4.0 3.6 1 1 2 3 3 3 0 Serine rich protein interaction domain AIP3 PF03915.13 BAD84819.1 - 0.017 14.3 24.5 0.17 10.9 16.2 2.2 1 1 1 2 2 2 0 Actin interacting protein 3 TMPIT PF07851.13 BAD84819.1 - 0.019 14.2 17.5 0.092 12.0 0.4 3.2 1 1 3 4 4 4 0 TMPIT-like protein APG17 PF04108.12 BAD84819.1 - 0.019 14.1 24.6 1.2e+02 1.5 25.2 3.8 1 1 1 2 2 2 0 Autophagy protein Apg17 DUF2203 PF09969.9 BAD84819.1 - 0.02 15.6 18.7 4.2 8.1 2.8 4.1 1 1 2 3 3 3 0 Uncharacterized conserved protein (DUF2203) HsdM_N PF12161.8 BAD84819.1 - 0.032 14.9 7.3 4.9 7.8 0.3 3.8 1 1 2 3 3 3 0 HsdM N-terminal domain WXG100 PF06013.12 BAD84819.1 - 0.036 14.3 22.1 0.34 11.2 3.2 6.1 3 2 1 5 5 5 0 Proteins of 100 residues with WXG PPE PF00823.19 BAD84819.1 - 0.038 14.1 3.0 0.41 10.7 0.1 2.8 1 1 0 2 2 2 0 PPE family RecG_N PF17190.4 BAD84819.1 - 0.044 14.5 15.2 0.69 10.7 1.0 4.8 2 2 3 5 5 4 0 RecG N-terminal helical domain Laminin_I PF06008.14 BAD84819.1 - 0.05 13.3 29.8 0.04 13.6 9.9 3.8 1 1 3 4 4 4 0 Laminin Domain I Cbl_N PF02262.16 BAD84819.1 - 0.051 13.6 3.7 1.9 8.5 0.1 3.2 2 2 1 3 3 2 0 CBL proto-oncogene N-terminal domain 1 Cob_adeno_trans PF01923.18 BAD84819.1 - 0.072 13.2 11.9 0.21 11.7 2.7 3.4 1 1 0 2 2 2 0 Cobalamin adenosyltransferase SKA2 PF16740.5 BAD84819.1 - 0.073 12.8 18.0 3.6 7.4 0.5 4.7 1 1 1 4 4 4 0 Spindle and kinetochore-associated protein 2 FUSC PF04632.12 BAD84819.1 - 0.093 11.3 5.4 2.8 6.3 0.4 2.5 1 1 1 2 2 2 0 Fusaric acid resistance protein family COG6 PF06419.11 BAD84819.1 - 0.12 10.6 22.1 0.21 9.8 4.5 3.6 3 1 2 5 5 5 0 Conserved oligomeric complex COG6 Sec34 PF04136.15 BAD84819.1 - 0.12 12.2 21.2 2.8 7.8 0.4 4.7 2 2 4 6 6 6 0 Sec34-like family KxDL PF10241.9 BAD84819.1 - 0.13 12.5 12.8 0.74 10.1 0.0 4.4 2 2 2 5 5 4 0 Uncharacterized conserved protein HOOK PF05622.12 BAD84819.1 - 0.14 10.3 19.4 0.17 10.0 9.3 2.3 2 0 0 2 2 2 0 HOOK protein Syntaxin-6_N PF09177.11 BAD84819.1 - 0.18 12.4 20.3 4.3 7.9 3.1 4.4 2 2 1 3 3 3 0 Syntaxin 6, N-terminal DASH_Duo1 PF08651.10 BAD84819.1 - 0.19 11.5 19.1 0.26 11.1 0.5 5.7 3 3 2 6 6 4 0 DASH complex subunit Duo1 BAR_3 PF16746.5 BAD84819.1 - 0.19 11.4 17.6 0.28 10.8 1.6 3.0 2 2 0 3 3 3 0 BAR domain of APPL family FH2 PF02181.23 BAD84819.1 - 0.2 10.8 14.8 0.61 9.1 6.1 3.3 2 2 2 4 4 4 0 Formin Homology 2 Domain AAA_13 PF13166.6 BAD84819.1 - 0.23 10.0 25.9 8.1 4.9 26.0 2.0 1 1 0 1 1 1 0 AAA domain DUF3087 PF11286.8 BAD84819.1 - 0.24 10.8 5.2 0.1 12.1 2.1 1.9 2 0 0 2 2 1 0 Protein of unknown function (DUF3087) CdvA PF18822.1 BAD84819.1 - 0.25 11.2 25.3 0.066 13.1 1.0 4.9 1 1 5 6 6 6 0 CdvA-like coiled-coil domain Pox_I6 PF04595.13 BAD84819.1 - 0.27 10.2 6.5 5 6.0 0.2 3.0 2 1 1 3 3 3 0 Poxvirus I6-like family T7SS_ESX_EspC PF10824.8 BAD84819.1 - 0.34 11.4 14.6 0.091 13.2 1.2 4.2 3 2 2 5 5 4 0 Excreted virulence factor EspC, type VII ESX diderm MAD PF05557.13 BAD84819.1 - 0.36 9.2 23.6 0.31 9.4 11.8 2.2 1 1 1 2 2 2 0 Mitotic checkpoint protein Lipoprotein_7 PF01540.16 BAD84819.1 - 0.4 9.9 23.8 0.48 9.7 3.0 3.1 1 1 2 3 3 3 0 Adhesin lipoprotein UPF0242 PF06785.11 BAD84819.1 - 0.42 10.7 23.1 5.3 7.1 12.8 3.0 1 1 2 3 3 3 0 Uncharacterised protein family (UPF0242) N-terminus Put_Phosphatase PF06888.12 BAD84819.1 - 0.49 9.7 3.1 2 7.8 0.2 2.9 1 1 3 4 4 4 0 Putative Phosphatase PI_PP_I PF18363.1 BAD84819.1 - 0.53 10.5 5.0 5.1 7.3 0.1 3.6 2 2 2 4 4 4 0 Phosphoinositide phosphatase insertion domain DUF4559 PF15112.6 BAD84819.1 - 0.53 9.9 15.7 1.5 8.4 3.0 2.3 1 1 0 2 2 2 0 Domain of unknown function (DUF4559) Goodbye PF17109.5 BAD84819.1 - 0.54 10.7 15.0 9.3 6.7 0.6 4.9 2 2 3 5 5 5 0 fungal STAND N-terminal Goodbye domain MCC-bdg_PDZ PF10506.9 BAD84819.1 - 0.68 10.0 4.2 3.1 7.9 0.3 3.4 3 0 0 3 3 2 0 PDZ domain of MCC-2 bdg protein for Usher syndrome CAP_N PF01213.19 BAD84819.1 - 0.71 9.3 18.4 2 7.8 8.3 3.2 2 1 1 3 3 3 0 Adenylate cyclase associated (CAP) N terminal Cauli_AT PF03233.13 BAD84819.1 - 0.72 9.8 18.0 0.15 12.0 1.6 4.0 2 2 2 4 4 4 0 Aphid transmission protein MutS_III PF05192.18 BAD84819.1 - 0.74 10.0 14.1 8 6.6 14.2 2.3 1 1 0 1 1 1 0 MutS domain III DUF4201 PF13870.6 BAD84819.1 - 0.83 9.4 11.3 1.4 8.6 4.0 3.0 1 1 2 3 3 3 0 Domain of unknown function (DUF4201) DHR10 PF18595.1 BAD84819.1 - 0.84 9.7 25.8 1.4 9.0 7.8 4.5 2 2 1 3 3 3 0 Designed helical repeat protein 10 domain DUF1048 PF06304.11 BAD84819.1 - 0.85 10.1 4.2 0.51 10.8 0.6 2.5 3 1 0 3 3 1 0 Protein of unknown function (DUF1048) NOG1_N PF17835.1 BAD84819.1 - 0.93 9.4 9.8 0.4 10.6 3.7 3.0 2 2 0 2 2 2 0 NOG1 N-terminal helical domain HSL_N PF06350.12 BAD84819.1 - 1 8.3 5.2 0.81 8.6 0.3 2.5 2 1 1 3 3 2 0 Hormone-sensitive lipase (HSL) N-terminus HAMP PF00672.25 BAD84819.1 - 1.5 9.3 9.6 5.6 7.4 0.1 5.6 6 1 0 6 6 2 0 HAMP domain CENP-F_leu_zip PF10473.9 BAD84819.1 - 1.5 8.9 25.1 0.023 14.7 8.0 3.7 2 2 1 4 4 4 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 HMMR_N PF15905.5 BAD84819.1 - 1.5 8.2 27.4 0.73 9.2 4.6 2.3 1 1 0 2 2 2 0 Hyaluronan mediated motility receptor N-terminal DUF4164 PF13747.6 BAD84819.1 - 1.6 9.1 19.8 4.1 7.7 1.1 4.7 3 2 2 5 5 4 0 Domain of unknown function (DUF4164) ATG16 PF08614.11 BAD84819.1 - 1.6 8.9 19.5 0.56 10.4 2.0 3.1 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) DUF3810 PF12725.7 BAD84819.1 - 1.7 7.9 11.4 16 4.7 0.4 3.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3810) Exonuc_VII_S PF02609.16 BAD84819.1 - 1.7 8.8 8.4 4.7 7.4 1.7 3.7 3 1 1 4 4 3 0 Exonuclease VII small subunit CENP-K PF11802.8 BAD84819.1 - 1.9 8.0 18.0 1.8 8.0 1.1 3.2 1 1 1 3 3 3 0 Centromere-associated protein K IFT20 PF14931.6 BAD84819.1 - 1.9 8.7 22.0 0.26 11.5 2.1 4.5 2 2 3 5 5 5 0 Intraflagellar transport complex B, subunit 20 Fzo_mitofusin PF04799.13 BAD84819.1 - 2.1 7.9 17.7 1.7 8.2 0.4 4.4 2 2 2 4 4 4 0 fzo-like conserved region Med9 PF07544.13 BAD84819.1 - 2.2 8.4 12.9 2.2 8.4 0.5 4.3 2 2 1 3 3 3 0 RNA polymerase II transcription mediator complex subunit 9 SKA1 PF07160.12 BAD84819.1 - 2.2 8.1 20.8 1.9 8.3 9.4 2.9 2 2 0 2 2 2 0 Spindle and kinetochore-associated protein 1 Tweety PF04906.13 BAD84819.1 - 2.6 6.6 15.4 1.4 7.5 1.8 2.8 1 1 2 3 3 3 0 Tweety COG2 PF06148.11 BAD84819.1 - 2.6 8.1 21.7 2.1 8.5 1.2 5.0 2 2 2 5 5 5 0 COG (conserved oligomeric Golgi) complex component, COG2 COG5 PF10392.9 BAD84819.1 - 2.8 8.1 17.8 4.1 7.6 0.3 4.4 2 2 2 4 4 4 0 Golgi transport complex subunit 5 DUF4208 PF13907.6 BAD84819.1 - 3 8.3 8.1 3 8.3 0.8 3.9 2 2 2 4 4 3 0 Domain of unknown function (DUF4208) YabA PF06156.13 BAD84819.1 - 3 8.5 21.8 23 5.7 1.5 5.0 2 2 2 4 4 3 0 Initiation control protein YabA DUF4298 PF14131.6 BAD84819.1 - 3.2 7.8 14.0 2 8.4 1.8 4.6 2 2 2 4 4 4 0 Domain of unknown function (DUF4298) HAUS6_N PF14661.6 BAD84819.1 - 3.2 7.3 19.3 1.6 8.3 3.1 3.0 1 1 1 3 3 3 0 HAUS augmin-like complex subunit 6 N-terminus KELK PF15796.5 BAD84819.1 - 3.3 8.2 14.1 17 5.9 0.3 4.4 3 1 2 5 5 3 0 KELK-motif containing domain of MRCK Ser/Thr protein kinase Peptidase_C65 PF10275.9 BAD84819.1 - 3.4 7.0 11.3 1.2 8.6 1.5 2.8 2 1 0 2 2 2 0 Peptidase C65 Otubain Fez1 PF06818.15 BAD84819.1 - 3.5 8.0 20.3 6.9 7.1 9.5 2.4 1 1 1 2 2 2 0 Fez1 DUF2935 PF11155.8 BAD84819.1 - 3.7 7.9 11.9 4.1 7.8 1.6 3.6 1 1 2 3 3 3 0 Domain of unknown function (DUF2935) GAS PF13851.6 BAD84819.1 - 3.8 6.8 21.3 4.6 6.5 12.0 3.3 1 1 3 4 4 4 0 Growth-arrest specific micro-tubule binding TMF_TATA_bd PF12325.8 BAD84819.1 - 4.1 7.7 26.4 1.4 9.1 2.4 4.0 2 2 2 4 4 4 0 TATA element modulatory factor 1 TATA binding LOH1CR12 PF10158.9 BAD84819.1 - 4.2 7.4 18.2 3.3 7.7 1.2 4.0 2 2 2 4 4 4 0 Tumour suppressor protein H-kinase_dim PF02895.14 BAD84819.1 - 4.2 7.8 14.8 22 5.6 0.0 5.0 3 2 0 3 3 3 0 Signal transducing histidine kinase, homodimeric domain YkuI_C PF10388.9 BAD84819.1 - 4.7 7.0 8.8 16 5.2 3.5 2.9 2 1 0 2 2 2 0 EAL-domain associated signalling protein domain DASH_Dad2 PF08654.10 BAD84819.1 - 5.2 7.6 20.8 9.8 6.7 2.0 4.6 1 1 1 3 3 3 0 DASH complex subunit Dad2 DUF2400 PF09674.10 BAD84819.1 - 5.4 6.9 6.5 21 5.0 0.8 2.6 1 1 0 2 2 2 0 Protein of unknown function (DUF2400) RasGAP_C PF03836.15 BAD84819.1 - 5.5 7.1 17.8 4.6 7.4 0.7 3.5 2 2 1 3 3 3 0 RasGAP C-terminus ZapB PF06005.12 BAD84819.1 - 5.7 7.5 20.3 9.3 6.8 0.0 4.9 2 2 1 4 4 4 0 Cell division protein ZapB T2SSF PF00482.23 BAD84819.1 - 5.8 6.9 15.1 12 5.9 0.6 4.4 2 1 4 6 6 6 0 Type II secretion system (T2SS), protein F AI-2E_transport PF01594.16 BAD84819.1 - 5.9 5.9 6.1 15 4.6 0.9 3.0 2 2 0 2 2 2 0 AI-2E family transporter eIF3_N PF09440.10 BAD84819.1 - 7.5 7.0 20.6 14 6.1 0.7 4.1 2 2 2 4 4 4 0 eIF3 subunit 6 N terminal domain FlaC_arch PF05377.11 BAD84819.1 - 7.6 7.0 28.2 2.6 8.5 0.5 6.4 3 2 4 7 7 7 0 Flagella accessory protein C (FlaC) CheR PF01739.18 BAD84820.1 - 4.3e-57 192.8 0.0 5.9e-57 192.3 0.0 1.1 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain CheR_N PF03705.15 BAD84820.1 - 7.1e-10 38.5 6.1 1.5e-09 37.5 6.1 1.6 1 0 0 1 1 1 1 CheR methyltransferase, all-alpha domain Methyltransf_12 PF08242.12 BAD84820.1 - 0.0071 17.1 0.0 0.12 13.2 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 BAD84820.1 - 0.022 15.5 0.0 0.43 11.3 0.0 2.3 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_11 PF08241.12 BAD84820.1 - 0.028 15.0 0.0 0.16 12.7 0.0 2.2 1 1 0 1 1 1 0 Methyltransferase domain Response_reg PF00072.24 BAD84821.1 - 6.2e-33 113.3 2.1 6.9e-33 113.2 2.1 1.0 1 0 0 1 1 1 1 Response regulator receiver domain MTD PF01993.18 BAD84821.1 - 0.0029 17.0 0.6 0.0035 16.7 0.6 1.1 1 0 0 1 1 1 1 methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase B12-binding PF02310.19 BAD84821.1 - 0.012 15.6 0.1 0.017 15.1 0.1 1.2 1 0 0 1 1 1 0 B12 binding domain UPF0261 PF06792.11 BAD84821.1 - 0.015 14.3 0.7 0.018 14.0 0.7 1.0 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0261) CheB_methylest PF01339.17 BAD84822.1 - 1.5e-63 213.5 0.1 5.9e-63 211.6 0.0 2.0 3 0 0 3 3 3 1 CheB methylesterase Response_reg PF00072.24 BAD84822.1 - 2.3e-26 92.2 1.0 5.7e-26 90.9 0.2 2.1 3 0 0 3 3 3 1 Response regulator receiver domain P2 PF07194.11 BAD84823.1 - 4.8e-34 116.3 0.8 8.7e-18 64.2 0.2 3.0 2 0 0 2 2 2 2 P2 response regulator binding domain Hpt PF01627.23 BAD84823.1 - 2.1e-21 76.0 0.2 2.1e-21 76.0 0.2 2.7 3 0 0 3 3 3 1 Hpt domain H-kinase_dim PF02895.14 BAD84823.1 - 5.2e-17 62.0 3.3 1.8e-16 60.3 3.3 2.0 1 0 0 1 1 1 1 Signal transducing histidine kinase, homodimeric domain FliL PF03748.14 BAD84823.1 - 0.069 13.7 0.5 0.48 11.0 0.1 2.6 2 1 1 3 3 3 0 Flagellar basal body-associated protein FliL Importin_rep_3 PF18806.1 BAD84823.1 - 0.075 13.1 0.0 0.3 11.1 0.0 2.0 1 0 0 1 1 1 0 Importin 13 repeat LPP PF04728.13 BAD84823.1 - 0.1 13.0 0.5 0.54 10.7 0.3 2.4 2 0 0 2 2 2 0 Lipoprotein leucine-zipper COG2 PF06148.11 BAD84823.1 - 0.28 11.3 6.2 12 6.0 0.1 3.4 2 1 1 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 LUC7 PF03194.15 BAD84823.1 - 0.62 9.7 3.5 0.87 9.2 1.1 2.3 2 1 0 2 2 2 0 LUC7 N_terminus Sipho_Gp157 PF05565.11 BAD84823.1 - 3.5 7.6 6.7 11 6.0 0.0 3.5 3 0 0 3 3 3 0 Siphovirus Gp157 CheW PF01584.19 BAD84824.1 - 5.6e-28 97.3 0.9 7.8e-28 96.8 0.9 1.2 1 0 0 1 1 1 1 CheW-like domain HATPase_c PF02518.26 BAD84824.1 - 2.7e-12 47.2 0.0 5.2e-12 46.3 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CheC PF04509.12 BAD84825.1 - 1.9e-16 59.7 2.5 2.5e-09 36.9 0.9 2.3 2 0 0 2 2 2 2 CheC-like family CheX PF13690.6 BAD84825.1 - 4.1e-09 36.5 1.3 8e-07 29.2 0.2 2.1 2 0 0 2 2 2 2 Chemotaxis phosphatase CheX CheC PF04509.12 BAD84826.1 - 3.7e-12 45.9 0.3 0.0001 22.1 0.0 2.5 2 0 0 2 2 2 2 CheC-like family CheX PF13690.6 BAD84826.1 - 4e-10 39.7 0.0 1.2e-06 28.6 0.0 2.6 3 0 0 3 3 3 2 Chemotaxis phosphatase CheX MCPsignal PF00015.21 BAD84827.1 - 9.1e-44 149.3 46.2 6.5e-38 130.2 16.8 4.6 1 1 3 4 4 4 4 Methyl-accepting chemotaxis protein (MCP) signalling domain dCache_1 PF02743.18 BAD84827.1 - 2e-43 149.0 0.3 2e-43 149.0 0.3 3.7 2 1 0 2 2 1 1 Cache domain Cache_3-Cache_2 PF17201.4 BAD84827.1 - 1.6e-17 63.8 2.1 1.6e-17 63.8 2.1 3.6 2 1 1 4 4 4 1 Cache 3/Cache 2 fusion domain dCache_2 PF08269.11 BAD84827.1 - 2.2e-07 30.4 0.2 2.2e-07 30.4 0.2 4.8 3 3 1 4 4 4 1 Cache domain HAMP PF00672.25 BAD84827.1 - 2.8e-07 30.8 5.8 0.0018 18.6 0.0 4.7 4 1 1 5 5 2 2 HAMP domain DUF948 PF06103.11 BAD84827.1 - 4e-06 27.0 46.4 0.024 14.9 1.5 7.7 4 3 3 7 7 7 4 Bacterial protein of unknown function (DUF948) sCache_2 PF17200.4 BAD84827.1 - 0.00014 21.8 0.3 0.00014 21.8 0.3 3.6 3 2 0 3 3 2 1 Single Cache domain 2 GAPES1 PF17155.4 BAD84827.1 - 0.00081 18.8 0.0 0.0019 17.6 0.0 1.6 1 0 0 1 1 1 1 Gammaproteobacterial periplasmic sensor domain Fib_alpha PF08702.10 BAD84827.1 - 0.0014 18.8 27.6 0.092 12.9 1.6 4.9 4 1 1 5 5 4 2 Fibrinogen alpha/beta chain family Snapin_Pallidin PF14712.6 BAD84827.1 - 0.0055 17.1 21.7 0.55 10.7 2.4 5.1 4 1 1 5 5 4 2 Snapin/Pallidin CheZ PF04344.13 BAD84827.1 - 0.007 16.3 6.2 0.007 16.3 6.2 4.6 3 1 2 5 5 4 1 Chemotaxis phosphatase, CheZ Syntaxin_2 PF14523.6 BAD84827.1 - 0.0094 16.3 0.9 0.0094 16.3 0.9 5.3 3 2 0 3 3 2 1 Syntaxin-like protein DUF5316 PF17247.2 BAD84827.1 - 0.017 15.1 1.3 0.15 12.1 0.1 2.3 2 0 0 2 2 2 0 Family of unknown function (DUF5316) ApoLp-III PF07464.11 BAD84827.1 - 0.017 15.2 46.1 0.029 14.4 8.7 6.1 3 1 2 6 6 5 0 Apolipophorin-III precursor (apoLp-III) GAF_2 PF13185.6 BAD84827.1 - 0.02 15.2 0.0 0.22 11.8 0.0 2.8 2 1 1 3 3 2 0 GAF domain Prominin PF05478.11 BAD84827.1 - 0.031 12.3 24.3 0.042 11.8 10.8 2.5 1 1 1 2 2 2 0 Prominin NPV_P10 PF05531.12 BAD84827.1 - 0.033 14.7 29.4 2.6 8.6 2.5 6.2 5 2 2 7 7 5 0 Nucleopolyhedrovirus P10 protein Med30 PF11315.8 BAD84827.1 - 0.053 13.7 21.4 0.25 11.5 5.1 3.8 3 1 1 4 4 3 0 Mediator complex subunit 30 Spc7 PF08317.11 BAD84827.1 - 0.062 12.2 41.2 0.062 12.2 9.0 3.4 2 1 2 4 4 3 0 Spc7 kinetochore protein Med9 PF07544.13 BAD84827.1 - 0.067 13.3 14.4 0.72 10.0 1.8 4.4 3 1 0 3 3 3 0 RNA polymerase II transcription mediator complex subunit 9 Mod_r PF07200.13 BAD84827.1 - 0.081 13.0 27.5 0.58 10.3 6.1 4.4 3 2 1 4 4 4 0 Modifier of rudimentary (Mod(r)) protein Sec34 PF04136.15 BAD84827.1 - 0.13 12.1 26.2 2.4 8.0 3.0 5.5 3 2 1 5 5 5 0 Sec34-like family EzrA PF06160.12 BAD84827.1 - 0.14 10.3 28.0 1.6 6.8 28.0 3.1 1 1 0 1 1 1 0 Septation ring formation regulator, EzrA AKNA PF12443.8 BAD84827.1 - 0.15 12.7 6.2 13 6.5 1.8 4.1 2 1 2 4 4 4 0 AT-hook-containing transcription factor TACC_C PF05010.14 BAD84827.1 - 0.18 11.6 35.0 0.15 11.8 7.8 4.0 3 2 1 4 4 3 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal AAA_13 PF13166.6 BAD84827.1 - 0.23 10.1 31.5 0.24 10.0 9.5 2.3 1 1 1 2 2 2 0 AAA domain DUF885 PF05960.11 BAD84827.1 - 0.23 11.0 19.9 4 7.0 10.9 2.9 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF885) Laminin_I PF06008.14 BAD84827.1 - 0.25 11.0 42.7 0.71 9.5 9.6 4.1 2 1 2 4 4 4 0 Laminin Domain I BLOC1_2 PF10046.9 BAD84827.1 - 0.33 11.3 33.8 0.5 10.7 2.5 6.3 3 2 3 6 6 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Laminin_II PF06009.12 BAD84827.1 - 0.33 11.0 41.0 0.5 10.4 6.5 5.9 2 1 4 6 6 5 0 Laminin Domain II Med15_fungi PF05397.12 BAD84827.1 - 0.36 11.1 10.0 6.9 7.0 0.0 4.6 4 1 1 5 5 4 0 Mediator complex subunit 15 BORCS8 PF10167.9 BAD84827.1 - 0.43 10.5 21.0 0.92 9.5 0.4 4.6 4 1 1 5 5 4 0 BLOC-1-related complex sub-unit 8 DUF1664 PF07889.12 BAD84827.1 - 0.44 10.6 38.9 0.41 10.7 3.4 6.1 3 2 3 6 6 6 0 Protein of unknown function (DUF1664) sCache_3_2 PF17203.4 BAD84827.1 - 0.46 10.6 12.6 1.3 9.1 0.0 5.0 4 1 1 5 5 5 0 Single cache domain 3 Katanin_con80 PF13925.6 BAD84827.1 - 0.68 10.0 7.5 0.23 11.5 0.4 3.4 2 2 0 2 2 2 0 con80 domain of Katanin T3SSipB PF16535.5 BAD84827.1 - 0.7 10.4 29.9 0.37 11.3 0.6 4.7 2 1 2 4 4 4 0 Type III cell invasion protein SipB PhageMin_Tail PF10145.9 BAD84827.1 - 0.82 9.5 30.9 1.5 8.6 8.1 4.4 1 1 1 3 3 3 0 Phage-related minor tail protein Syntaxin-6_N PF09177.11 BAD84827.1 - 0.86 10.2 31.6 0.14 12.8 4.7 5.1 3 1 1 5 5 4 0 Syntaxin 6, N-terminal BEX PF04538.12 BAD84827.1 - 1.1 9.9 8.6 13 6.4 2.9 3.1 2 0 0 2 2 2 0 Brain expressed X-linked like family DUF2573 PF10835.8 BAD84827.1 - 1.5 9.2 3.9 11 6.4 0.0 4.1 4 0 0 4 4 2 0 Protein of unknown function (DUF2573) ISG65-75 PF11727.8 BAD84827.1 - 1.5 8.0 29.1 1.3 8.2 3.9 3.4 1 1 1 3 3 3 0 Invariant surface glycoprotein YkuI_C PF10388.9 BAD84827.1 - 1.6 8.5 6.2 13 5.5 0.0 4.0 4 1 0 4 4 3 0 EAL-domain associated signalling protein domain ANAPC4 PF12896.7 BAD84827.1 - 1.7 8.1 8.5 0.79 9.2 0.3 3.9 2 2 2 4 4 4 0 Anaphase-promoting complex, cyclosome, subunit 4 YkyA PF10368.9 BAD84827.1 - 1.9 8.1 39.8 0.7 9.5 7.7 4.6 3 2 1 4 4 3 0 Putative cell-wall binding lipoprotein LXG PF04740.12 BAD84827.1 - 2.1 8.0 26.0 6.4 6.4 7.9 4.4 1 1 0 2 2 2 0 LXG domain of WXG superfamily Vps53_N PF04100.12 BAD84827.1 - 2.2 7.2 30.0 0.78 8.6 4.8 3.9 1 1 3 4 4 4 0 Vps53-like, N-terminal PARP_reg PF02877.14 BAD84827.1 - 2.6 8.2 6.4 5.9 7.0 0.3 3.4 2 1 0 3 3 3 0 Poly(ADP-ribose) polymerase, regulatory domain HAUS-augmin3 PF14932.6 BAD84827.1 - 3.2 7.2 23.2 1.5 8.3 3.8 3.5 2 1 0 3 3 3 0 HAUS augmin-like complex subunit 3 AIP3 PF03915.13 BAD84827.1 - 3.4 6.7 28.8 16 4.5 3.9 3.1 1 1 0 2 2 2 0 Actin interacting protein 3 Helicase_IV_N PF12462.8 BAD84827.1 - 4.6 7.2 7.4 32 4.4 0.2 3.5 3 0 0 3 3 3 0 DNA helicase IV / RNA helicase N terminal Serine_rich PF08824.10 BAD84827.1 - 4.6 7.2 16.4 5 7.1 2.3 4.3 3 2 1 4 4 3 0 Serine rich protein interaction domain KAR9 PF08580.10 BAD84827.1 - 4.6 5.7 14.9 0.17 10.4 6.3 2.5 2 1 0 2 2 2 0 Yeast cortical protein KAR9 COG5 PF10392.9 BAD84827.1 - 4.8 7.4 15.3 4.9 7.3 1.7 4.4 3 1 1 4 4 4 0 Golgi transport complex subunit 5 Cauli_AT PF03233.13 BAD84827.1 - 5 7.0 17.8 8.4 6.3 0.1 5.1 3 2 2 5 5 5 0 Aphid transmission protein APG17 PF04108.12 BAD84827.1 - 5.1 6.1 30.9 4.2 6.4 5.8 3.7 1 1 0 2 2 2 0 Autophagy protein Apg17 SesA PF17107.5 BAD84827.1 - 5.9 7.1 21.6 4.9 7.4 5.3 5.1 2 1 4 6 6 5 0 N-terminal domain on NACHT_NTPase and P-loop NTPases CpxA_peri PF16527.5 BAD84827.1 - 6.3 7.2 7.0 31 5.0 0.1 4.0 3 1 2 5 5 4 0 Two-component sensor protein CpxA, periplasmic domain DUF2203 PF09969.9 BAD84827.1 - 8.7 7.1 32.7 76 4.1 1.2 5.6 2 1 3 5 5 5 0 Uncharacterized conserved protein (DUF2203) PI3K_P85_iSH2 PF16454.5 BAD84827.1 - 10 5.7 21.9 1.6 8.3 4.8 3.1 3 1 0 3 3 2 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain CheD PF03975.13 BAD84828.1 - 1e-35 122.1 0.3 1.3e-35 121.8 0.3 1.1 1 0 0 1 1 1 1 CheD chemotactic sensory transduction ZapA PF05164.13 BAD84829.1 - 0.0038 17.6 2.4 0.91 10.0 0.2 2.6 2 0 0 2 2 2 2 Cell division protein ZapA Phasin PF05597.11 BAD84829.1 - 0.014 15.4 3.6 0.077 13.0 0.4 2.3 2 0 0 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) Ku_PK_bind PF08785.11 BAD84829.1 - 0.016 15.3 0.6 0.048 13.8 0.4 1.9 1 1 0 1 1 1 0 Ku C terminal domain like Trimer_CC PF08954.11 BAD84829.1 - 0.18 11.4 6.4 0.16 11.6 0.7 2.5 2 0 0 2 2 2 0 Trimerisation motif LapA_dom PF06305.11 BAD84829.1 - 9.4 6.1 10.9 1.4 8.8 0.6 2.8 3 0 0 3 3 3 0 Lipopolysaccharide assembly protein A domain CheF-arch PF04283.12 BAD84830.1 - 3.1e-14 53.2 0.3 6.3e-14 52.3 0.3 1.5 1 1 0 1 1 1 1 Chemotaxis signal transduction system protein F from archaea DUF2250 PF10007.9 BAD84830.1 - 0.0044 17.1 2.5 1.6 8.9 0.1 2.5 2 0 0 2 2 2 2 Uncharacterized protein conserved in archaea (DUF2250) TrmB PF01978.19 BAD84830.1 - 0.057 13.3 0.1 0.12 12.2 0.1 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Pcc1 PF09341.10 BAD84831.1 - 1.9e-13 50.3 0.0 2.1e-13 50.2 0.0 1.0 1 0 0 1 1 1 1 Transcription factor Pcc1 Prefoldin_2 PF01920.20 BAD84832.1 - 4.7e-26 90.8 16.6 5.3e-26 90.6 16.6 1.0 1 0 0 1 1 1 1 Prefoldin subunit FPP PF05911.11 BAD84832.1 - 1.6e-05 23.4 8.7 1.9e-05 23.1 8.7 1.0 1 0 0 1 1 1 1 Filament-like plant protein, long coiled-coil CdvA PF18822.1 BAD84832.1 - 0.00013 21.7 7.8 0.033 14.0 0.2 2.3 2 0 0 2 2 2 2 CdvA-like coiled-coil domain XhlA PF10779.9 BAD84832.1 - 0.00047 20.3 7.9 0.018 15.2 5.8 2.1 2 0 0 2 2 2 1 Haemolysin XhlA ALIX_LYPXL_bnd PF13949.6 BAD84832.1 - 0.0024 17.2 6.4 0.0032 16.8 6.4 1.1 1 0 0 1 1 1 1 ALIX V-shaped domain binding to HIV DUF3416 PF11896.8 BAD84832.1 - 0.0026 18.1 1.1 0.0037 17.6 1.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF3416) DUF1690 PF07956.11 BAD84832.1 - 0.0028 18.1 6.3 0.0037 17.7 6.3 1.2 1 0 0 1 1 1 1 Protein of Unknown function (DUF1690) V_ATPase_I PF01496.19 BAD84832.1 - 0.018 13.0 3.7 0.02 12.8 3.7 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family TolA_bind_tri PF16331.5 BAD84832.1 - 0.021 14.9 9.8 0.14 12.2 0.3 2.1 2 0 0 2 2 2 0 TolA binding protein trimerisation FlaC_arch PF05377.11 BAD84832.1 - 0.025 15.0 2.4 0.025 15.0 2.4 2.6 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) BRI3BP PF14965.6 BAD84832.1 - 0.033 13.7 0.6 0.058 12.9 0.2 1.6 1 1 1 2 2 2 0 Negative regulator of p53/TP53 DUF844 PF05815.11 BAD84832.1 - 0.034 13.4 0.0 0.039 13.2 0.0 1.1 1 0 0 1 1 1 0 Baculovirus protein of unknown function (DUF844) Prefoldin PF02996.17 BAD84832.1 - 0.043 13.7 16.6 0.076 12.9 6.0 2.2 1 1 1 2 2 2 0 Prefoldin subunit Prominin PF05478.11 BAD84832.1 - 0.05 11.6 6.9 0.067 11.1 6.9 1.2 1 0 0 1 1 1 0 Prominin CENP-F_leu_zip PF10473.9 BAD84832.1 - 0.051 13.6 14.0 0.57 10.2 1.3 2.1 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF3450 PF11932.8 BAD84832.1 - 0.052 12.9 13.5 0.37 10.1 3.9 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) NPV_P10 PF05531.12 BAD84832.1 - 0.053 14.0 2.0 0.053 14.0 2.0 2.2 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein Flagellin_N PF00669.20 BAD84832.1 - 0.056 13.5 5.6 0.18 11.9 5.6 1.8 1 1 0 1 1 1 0 Bacterial flagellin N-terminal helical region Cortex-I_coil PF09304.10 BAD84832.1 - 0.06 13.6 10.8 0.32 11.2 2.6 2.1 1 1 1 2 2 2 0 Cortexillin I, coiled coil Vps52 PF04129.12 BAD84832.1 - 0.063 12.0 3.9 0.068 11.9 3.9 1.1 1 0 0 1 1 1 0 Vps52 / Sac2 family HSCB_C PF07743.13 BAD84832.1 - 0.064 13.8 2.0 0.064 13.8 2.0 2.1 2 0 0 2 2 2 0 HSCB C-terminal oligomerisation domain Filament PF00038.21 BAD84832.1 - 0.094 12.3 12.4 0.24 10.9 3.6 2.0 1 1 1 2 2 2 0 Intermediate filament protein DHR10 PF18595.1 BAD84832.1 - 0.095 12.8 15.8 0.39 10.8 7.0 2.1 2 0 0 2 2 2 0 Designed helical repeat protein 10 domain GAS PF13851.6 BAD84832.1 - 0.097 12.0 13.4 0.45 9.8 5.6 2.0 2 0 0 2 2 2 0 Growth-arrest specific micro-tubule binding SlyX PF04102.12 BAD84832.1 - 0.1 13.3 1.0 0.1 13.3 1.0 2.4 2 0 0 2 2 2 0 SlyX ADIP PF11559.8 BAD84832.1 - 0.1 12.7 12.5 0.065 13.3 3.2 2.1 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding Spc7 PF08317.11 BAD84832.1 - 0.11 11.3 16.5 0.59 9.0 16.5 1.8 1 1 0 1 1 1 0 Spc7 kinetochore protein TcdB_N PF12918.7 BAD84832.1 - 0.12 12.6 9.0 0.35 11.2 0.7 2.3 2 0 0 2 2 2 0 TcdB toxin N-terminal helical domain BRCC36_C PF18110.1 BAD84832.1 - 0.13 12.4 6.1 0.32 11.2 0.2 2.2 1 1 1 2 2 2 0 BRCC36 C-terminal helical domain FUSC PF04632.12 BAD84832.1 - 0.16 10.5 1.2 0.18 10.3 1.2 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein family DUF2408 PF10303.9 BAD84832.1 - 0.17 12.4 8.0 0.27 11.8 8.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2408) DUF4404 PF14357.6 BAD84832.1 - 0.22 12.2 10.2 0.52 11.0 2.5 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4404) DUF4988 PF16378.5 BAD84832.1 - 0.27 10.9 5.8 0.12 12.0 1.3 2.0 2 0 0 2 2 2 0 Domain of unknown function DUF3287 PF11690.8 BAD84832.1 - 0.28 10.9 1.8 0.38 10.5 0.7 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF3287) YabA PF06156.13 BAD84832.1 - 0.28 11.8 11.8 0.98 10.1 2.5 2.1 1 1 1 2 2 2 0 Initiation control protein YabA NPL PF17800.1 BAD84832.1 - 0.3 11.7 2.5 0.25 11.9 0.7 1.8 1 1 1 2 2 2 0 Nucleoplasmin-like domain UPF0184 PF03670.13 BAD84832.1 - 0.35 11.3 1.9 1.8 9.0 0.2 2.5 2 1 1 3 3 3 0 Uncharacterised protein family (UPF0184) Laminin_II PF06009.12 BAD84832.1 - 0.38 10.8 12.6 0.83 9.7 12.3 1.6 1 1 0 1 1 1 0 Laminin Domain II CLZ PF16526.5 BAD84832.1 - 0.39 11.1 12.0 0.36 11.2 3.9 2.3 2 0 0 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels PI3K_P85_iSH2 PF16454.5 BAD84832.1 - 0.45 10.1 13.9 15 5.2 14.0 2.0 1 1 0 1 1 1 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain FlxA PF14282.6 BAD84832.1 - 0.47 10.5 16.9 0.13 12.2 2.3 2.2 2 0 0 2 2 2 0 FlxA-like protein TPR_MLP1_2 PF07926.12 BAD84832.1 - 0.63 10.1 18.4 4.2 7.4 18.4 1.9 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein DUF4140 PF13600.6 BAD84832.1 - 0.66 10.4 12.0 45 4.6 12.0 2.4 1 1 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) CinA_KH PF18146.1 BAD84832.1 - 0.69 10.1 4.4 0.6 10.3 1.6 2.0 1 1 1 2 2 2 0 Damage-inducible protein CinA KH domain Seryl_tRNA_N PF02403.22 BAD84832.1 - 0.76 10.0 15.4 0.14 12.4 5.9 2.1 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain YlqD PF11068.8 BAD84832.1 - 0.95 9.8 17.8 0.085 13.2 4.4 2.1 1 1 1 2 2 2 0 YlqD protein DUF1664 PF07889.12 BAD84832.1 - 0.98 9.5 9.3 5.1 7.2 9.3 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) Spc24 PF08286.11 BAD84832.1 - 0.99 9.7 13.6 0.99 9.7 5.1 2.1 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 GrpE PF01025.19 BAD84832.1 - 1.1 8.9 9.5 0.45 10.2 4.4 2.0 2 0 0 2 2 2 0 GrpE AAA_13 PF13166.6 BAD84832.1 - 1.3 7.6 10.9 4.7 5.7 11.0 1.7 1 1 0 1 1 1 0 AAA domain BLOC1_2 PF10046.9 BAD84832.1 - 1.5 9.2 13.6 1.4e+02 2.8 13.7 2.1 1 1 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF16 PF01519.16 BAD84832.1 - 1.7 9.2 14.8 0.58 10.7 3.7 2.1 1 1 0 2 2 2 0 Protein of unknown function DUF16 Syntaxin-6_N PF09177.11 BAD84832.1 - 2 9.0 7.8 28 5.4 7.8 2.2 1 1 0 1 1 1 0 Syntaxin 6, N-terminal RasGAP_C PF03836.15 BAD84832.1 - 2.2 8.4 11.5 1.9 8.6 2.6 2.2 1 1 1 2 2 2 0 RasGAP C-terminus Sec34 PF04136.15 BAD84832.1 - 2.3 8.1 10.8 6.3 6.7 2.0 2.1 1 1 0 2 2 2 0 Sec34-like family Fib_alpha PF08702.10 BAD84832.1 - 2.5 8.3 10.6 5.3 7.2 10.6 1.6 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family Allexi_40kDa PF05549.11 BAD84832.1 - 2.5 7.5 6.0 13 5.2 6.0 1.9 1 1 0 1 1 1 0 Allexivirus 40kDa protein DivIC PF04977.15 BAD84832.1 - 2.6 7.9 16.0 4.4 7.2 5.0 2.3 2 0 0 2 2 2 0 Septum formation initiator THOC7 PF05615.13 BAD84832.1 - 2.7 8.3 13.5 2.6 8.3 2.1 2.1 1 1 1 2 2 2 0 Tho complex subunit 7 Ead_Ea22 PF13935.6 BAD84832.1 - 3.1 8.4 7.8 14 6.4 7.8 1.8 1 1 0 1 1 1 0 Ead/Ea22-like protein bZIP_1 PF00170.21 BAD84832.1 - 3.2 7.9 14.8 0.066 13.3 5.2 2.3 2 1 0 2 2 2 0 bZIP transcription factor Snapin_Pallidin PF14712.6 BAD84832.1 - 3.3 8.2 17.0 0.92 10.0 3.8 2.1 1 1 1 2 2 2 0 Snapin/Pallidin EMP24_GP25L PF01105.24 BAD84832.1 - 3.4 7.6 5.9 5.7 6.8 5.5 1.6 1 1 0 1 1 1 0 emp24/gp25L/p24 family/GOLD TMF_DNA_bd PF12329.8 BAD84832.1 - 3.6 7.7 19.3 0.11 12.4 9.5 2.1 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding DUF4618 PF15397.6 BAD84832.1 - 3.6 6.9 16.9 0.29 10.5 5.1 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4618) zf-CpG_bind_C PF12269.8 BAD84832.1 - 3.8 7.2 10.3 4.9 6.9 2.8 2.0 1 1 1 2 2 2 0 CpG binding protein zinc finger C terminal domain YscO PF07321.12 BAD84832.1 - 4.4 7.2 16.8 5.6 6.9 5.5 2.1 1 1 1 2 2 2 0 Type III secretion protein YscO Nup54 PF13874.6 BAD84832.1 - 4.8 7.3 11.6 47 4.1 11.7 2.1 1 1 0 1 1 1 0 Nucleoporin complex subunit 54 MCU PF04678.13 BAD84832.1 - 4.9 7.2 9.3 20 5.2 9.3 1.8 1 1 0 1 1 1 0 Mitochondrial calcium uniporter CREPT PF16566.5 BAD84832.1 - 5.3 7.2 13.1 9.7 6.4 3.8 2.2 1 1 0 2 2 2 0 Cell-cycle alteration and expression-elevated protein in tumour Fmp27_WPPW PF10359.9 BAD84832.1 - 5.9 5.6 8.2 12 4.6 8.2 1.5 1 1 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain DUF2203 PF09969.9 BAD84832.1 - 6.1 7.6 9.0 2.3 9.0 4.3 2.0 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) HAUS-augmin3 PF14932.6 BAD84832.1 - 6.8 6.2 15.1 7 6.1 11.3 1.9 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 3 TMPIT PF07851.13 BAD84832.1 - 7 5.8 8.7 13 4.9 7.6 1.7 1 1 0 1 1 1 0 TMPIT-like protein DUF5320 PF17253.2 BAD84832.1 - 7.1 7.8 8.2 1.9 9.6 1.0 2.2 2 0 0 2 2 2 0 Family of unknown function (DUF5320) APG6_N PF17675.1 BAD84832.1 - 8.7 6.9 21.1 1.9e+02 2.6 21.5 2.0 1 1 0 1 1 1 0 Apg6 coiled-coil region Atg14 PF10186.9 BAD84832.1 - 8.9 5.3 9.6 13 4.7 9.6 1.3 1 1 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 SOAR PF16533.5 BAD84832.1 - 9.1 6.3 10.7 68 3.5 10.7 2.0 1 1 0 1 1 1 0 STIM1 Orai1-activating region DUF948 PF06103.11 BAD84832.1 - 9.8 6.5 9.5 2.8 8.3 2.9 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) DUF3194 PF11419.8 BAD84833.1 - 1.5e-27 95.7 4.5 1.8e-27 95.5 4.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3194) SmaI PF17411.2 BAD84833.1 - 0.016 14.4 0.0 0.018 14.2 0.0 1.0 1 0 0 1 1 1 0 Type II site-specific deoxyribonuclease DHHA1 PF02272.19 BAD84834.1 - 1.8e-13 51.1 2.5 9.5e-13 48.8 2.6 2.0 2 0 0 2 2 2 1 DHHA1 domain DHH PF01368.20 BAD84834.1 - 2.4e-11 43.8 0.0 4.7e-11 42.8 0.0 1.4 1 0 0 1 1 1 1 DHH family zf-Di19 PF05605.12 BAD84835.1 - 8.8e-05 22.7 0.1 0.45 10.8 0.2 2.2 2 0 0 2 2 2 2 Drought induced 19 protein (Di19), zinc-binding zf-ribbon_3 PF13248.6 BAD84835.1 - 0.0019 17.5 1.3 0.68 9.4 0.3 2.3 2 0 0 2 2 2 2 zinc-ribbon domain Ogr_Delta PF04606.12 BAD84835.1 - 0.003 17.5 1.0 0.34 10.9 0.1 2.3 2 0 0 2 2 2 1 Ogr/Delta-like zinc finger zf-C2H2_4 PF13894.6 BAD84835.1 - 0.0035 18.1 0.9 0.68 10.9 0.4 2.6 2 0 0 2 2 2 1 C2H2-type zinc finger zf-C2H2 PF00096.26 BAD84835.1 - 0.0057 17.0 1.0 1.1 9.8 0.5 2.6 2 0 0 2 2 2 1 Zinc finger, C2H2 type zinc_ribbon_2 PF13240.6 BAD84835.1 - 0.006 16.3 3.0 0.29 10.9 0.5 2.5 2 0 0 2 2 2 1 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 BAD84835.1 - 0.01 15.8 0.1 0.61 10.1 0.0 2.3 2 0 0 2 2 2 0 Transposase zinc-ribbon domain YacG PF03884.14 BAD84835.1 - 0.011 15.5 0.3 1.4 8.7 0.0 2.3 2 0 0 2 2 2 0 DNA gyrase inhibitor YacG zf-ACC PF17848.1 BAD84835.1 - 0.016 15.3 0.3 0.33 11.1 0.0 2.3 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain Rad50_zn_hook PF04423.14 BAD84835.1 - 0.021 14.7 0.3 1.2 9.0 0.0 2.6 2 0 0 2 2 2 0 Rad50 zinc hook motif Zn_ribbon_SprT PF17283.2 BAD84835.1 - 0.023 14.6 1.4 0.81 9.7 0.1 2.3 2 0 0 2 2 2 0 SprT-like zinc ribbon domain Cys_rich_CPXG PF14255.6 BAD84835.1 - 0.036 14.0 1.5 0.91 9.5 0.5 2.4 2 0 0 2 2 2 0 Cysteine-rich CPXCG Trm112p PF03966.16 BAD84835.1 - 0.038 14.6 0.1 0.082 13.5 0.1 1.6 1 1 0 1 1 1 0 Trm112p-like protein zf-LITAF-like PF10601.9 BAD84835.1 - 0.061 13.6 0.3 0.89 9.9 0.0 2.1 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain zf-RING_7 PF02591.15 BAD84835.1 - 0.098 12.9 0.2 1.9 8.8 0.0 2.4 2 0 0 2 2 2 0 C4-type zinc ribbon domain MqsA_antitoxin PF15731.5 BAD84835.1 - 0.11 12.6 0.0 0.18 11.9 0.0 1.4 1 1 0 1 1 1 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA TF_Zn_Ribbon PF08271.12 BAD84835.1 - 0.13 11.8 0.9 2.1 7.9 0.1 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding PhnA_Zn_Ribbon PF08274.12 BAD84835.1 - 0.13 12.3 1.8 1.8 8.6 0.1 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon Mu-like_Com PF10122.9 BAD84835.1 - 0.15 11.5 0.2 2.3 7.7 0.0 2.4 2 0 0 2 2 2 0 Mu-like prophage protein Com Zn-ribbon_8 PF09723.10 BAD84835.1 - 0.15 12.2 3.0 3.2 8.0 1.3 2.4 2 1 0 2 2 2 0 Zinc ribbon domain Desulfoferrod_N PF06397.12 BAD84835.1 - 0.16 11.6 2.9 0.9 9.2 0.1 2.5 2 1 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain zinc_ribbon_4 PF13717.6 BAD84835.1 - 0.2 11.6 1.2 8.8 6.4 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf-ISL3 PF14690.6 BAD84835.1 - 0.21 12.3 1.7 13 6.6 0.2 2.9 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 YhfH PF14149.6 BAD84835.1 - 0.29 11.2 2.4 7.6 6.6 0.8 2.5 2 1 0 2 2 2 0 YhfH-like protein zf-NADH-PPase PF09297.11 BAD84835.1 - 0.37 10.5 3.6 1.7 8.4 0.4 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-H2C2_2 PF13465.6 BAD84835.1 - 0.4 11.2 5.4 7 7.3 1.3 2.3 2 0 0 2 2 2 0 Zinc-finger double domain CpXC PF14353.6 BAD84835.1 - 0.41 10.7 1.8 2.5 8.2 1.8 2.1 1 1 0 1 1 1 0 CpXC protein zf-C2HC_2 PF13913.6 BAD84835.1 - 0.52 10.3 5.5 2.2 8.3 1.3 2.3 2 0 0 2 2 2 0 zinc-finger of a C2HC-type UPF0547 PF10571.9 BAD84835.1 - 2.9 8.0 6.8 6.3 7.0 1.2 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF1610 PF07754.11 BAD84835.1 - 6 6.9 9.4 2.2 8.3 2.7 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) TPR_12 PF13424.6 BAD84837.1 - 0.053 13.8 5.1 3.6 7.9 0.0 4.0 4 1 1 5 5 5 0 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 BAD84837.1 - 0.11 12.6 0.1 6.8 6.8 0.0 2.8 2 0 0 2 2 2 0 Fis1 C-terminal tetratricopeptide repeat PPR PF01535.20 BAD84837.1 - 0.15 12.3 0.1 7.4 7.1 0.0 3.7 3 0 0 3 3 3 0 PPR repeat Alpha_Helical PF18489.1 BAD84838.1 - 1.9e-55 186.5 0.3 2.6e-55 186.0 0.3 1.2 1 0 0 1 1 1 1 Alpha helical domain tRNA_bind PF01588.20 BAD84838.1 - 7.5e-19 67.7 0.1 1.4e-18 66.8 0.1 1.4 1 0 0 1 1 1 1 Putative tRNA binding domain DUF3189 PF11385.8 BAD84838.1 - 0.047 13.5 0.0 0.11 12.3 0.0 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF3189) Rubrerythrin PF02915.17 BAD84839.1 - 3e-32 111.9 5.7 3.6e-32 111.6 5.7 1.0 1 0 0 1 1 1 1 Rubrerythrin Ferritin_2 PF13668.6 BAD84839.1 - 0.013 15.7 0.8 0.18 12.0 0.6 2.0 1 1 0 1 1 1 0 Ferritin-like domain FadR_C PF07840.12 BAD84839.1 - 0.067 13.1 0.2 0.41 10.5 0.1 2.0 2 0 0 2 2 2 0 FadR C-terminal domain Mn_catalase PF05067.12 BAD84839.1 - 0.074 12.0 0.8 2 7.3 0.0 2.0 1 1 1 2 2 2 0 Manganese containing catalase DUF2383 PF09537.10 BAD84839.1 - 0.085 13.2 1.3 0.35 11.2 0.1 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF2383) Bacillus_HBL PF05791.11 BAD84839.1 - 0.11 12.3 0.5 0.35 10.7 0.1 1.8 2 0 0 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) GFO_IDH_MocA PF01408.22 BAD84840.1 - 7.9e-22 78.3 0.3 1.3e-21 77.6 0.3 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 BAD84840.1 - 2.3e-07 30.8 0.2 5.5e-07 29.6 0.2 1.7 1 1 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain Sacchrp_dh_NADP PF03435.18 BAD84840.1 - 0.11 12.8 0.1 0.41 10.9 0.1 2.2 2 1 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain Semialdhyde_dh PF01118.24 BAD84840.1 - 0.14 12.6 0.1 0.25 11.8 0.1 1.5 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain Zip PF02535.22 BAD84841.1 - 3.2e-22 79.2 30.8 6.4e-19 68.3 7.3 3.3 1 1 1 3 3 3 3 ZIP Zinc transporter SRP54 PF00448.22 BAD84842.1 - 1.4e-80 269.5 0.1 1.4e-80 269.5 0.1 1.7 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain SRP54_N PF02881.19 BAD84842.1 - 2e-12 47.1 6.5 2e-12 47.1 6.5 2.8 3 0 0 3 3 2 1 SRP54-type protein, helical bundle domain AAA_30 PF13604.6 BAD84842.1 - 3e-08 33.6 0.9 6e-08 32.6 0.9 1.5 1 0 0 1 1 1 1 AAA domain MobB PF03205.14 BAD84842.1 - 1.2e-06 28.4 2.0 0.00091 19.1 0.1 2.5 1 1 1 2 2 2 2 Molybdopterin guanine dinucleotide synthesis protein B AAA_17 PF13207.6 BAD84842.1 - 4.3e-06 27.2 0.1 4.3e-06 27.2 0.1 2.8 2 1 1 3 3 3 1 AAA domain MeaB PF03308.16 BAD84842.1 - 5.8e-06 25.5 0.1 2e-05 23.7 0.1 1.9 1 1 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB Zeta_toxin PF06414.12 BAD84842.1 - 1.2e-05 24.7 0.1 2.5e-05 23.7 0.1 1.6 1 0 0 1 1 1 1 Zeta toxin CbiA PF01656.23 BAD84842.1 - 1.3e-05 25.2 4.4 8.7e-05 22.6 0.2 3.1 1 1 1 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_22 PF13401.6 BAD84842.1 - 2.2e-05 24.7 0.1 0.00014 22.1 0.0 2.2 2 1 0 2 2 2 1 AAA domain AAA_33 PF13671.6 BAD84842.1 - 3.3e-05 24.1 0.1 9.5e-05 22.6 0.0 1.8 2 0 0 2 2 1 1 AAA domain cobW PF02492.19 BAD84842.1 - 5.7e-05 22.8 0.1 0.00012 21.7 0.1 1.5 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain Peripla_BP_4 PF13407.6 BAD84842.1 - 0.00013 21.7 4.1 0.17 11.4 0.2 3.0 1 1 2 3 3 3 2 Periplasmic binding protein domain VirC1 PF07015.11 BAD84842.1 - 0.00031 20.1 0.0 0.0006 19.2 0.0 1.4 1 0 0 1 1 1 1 VirC1 protein MMR_HSR1 PF01926.23 BAD84842.1 - 0.00067 19.7 2.7 0.0018 18.3 0.7 2.6 2 1 0 2 2 2 1 50S ribosome-binding GTPase APS_kinase PF01583.20 BAD84842.1 - 0.00086 19.2 0.1 0.0045 16.9 0.0 2.1 2 0 0 2 2 2 1 Adenylylsulphate kinase Thymidylate_kin PF02223.17 BAD84842.1 - 0.0011 18.7 3.0 0.0015 18.2 0.1 2.7 2 2 0 2 2 2 1 Thymidylate kinase ABC_tran PF00005.27 BAD84842.1 - 0.0016 19.0 0.5 0.014 15.9 0.0 2.2 2 0 0 2 2 2 1 ABC transporter KdpD PF02702.17 BAD84842.1 - 0.0017 17.9 0.5 0.0045 16.5 0.1 1.9 2 0 0 2 2 2 1 Osmosensitive K+ channel His kinase sensor domain AAA_16 PF13191.6 BAD84842.1 - 0.0029 18.0 1.9 0.013 15.9 0.0 2.4 1 1 1 2 2 2 1 AAA ATPase domain AAA_28 PF13521.6 BAD84842.1 - 0.0035 17.6 0.0 0.0089 16.3 0.0 1.8 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 BAD84842.1 - 0.0047 16.9 8.3 0.055 13.4 1.2 3.7 2 1 1 3 3 3 1 NTPase CbiJ PF02571.14 BAD84842.1 - 0.0071 15.8 0.0 0.013 15.0 0.0 1.4 1 0 0 1 1 1 1 Precorrin-6x reductase CbiJ/CobK AAA_19 PF13245.6 BAD84842.1 - 0.0079 16.5 0.2 0.02 15.2 0.2 1.7 1 1 0 1 1 1 1 AAA domain Fe-ADH PF00465.19 BAD84842.1 - 0.02 13.7 3.7 0.027 13.3 0.4 2.4 3 0 0 3 3 2 0 Iron-containing alcohol dehydrogenase CLP1_P PF16575.5 BAD84842.1 - 0.021 14.6 0.2 0.86 9.4 0.0 2.4 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop 6PF2K PF01591.18 BAD84842.1 - 0.022 14.1 0.0 0.049 12.9 0.0 1.5 1 0 0 1 1 1 0 6-phosphofructo-2-kinase KTI12 PF08433.10 BAD84842.1 - 0.023 14.1 0.0 0.054 12.9 0.0 1.6 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_31 PF13614.6 BAD84842.1 - 0.029 14.3 1.8 0.11 12.4 0.1 2.4 2 1 0 2 2 2 0 AAA domain TrwB_AAD_bind PF10412.9 BAD84842.1 - 0.031 13.2 0.1 0.13 11.2 0.0 1.9 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain AtuA PF07287.11 BAD84842.1 - 0.035 12.8 1.5 0.21 10.3 0.2 2.3 2 0 0 2 2 2 0 Acyclic terpene utilisation family protein AtuA LpxK PF02606.14 BAD84842.1 - 0.036 13.2 0.2 0.68 9.0 0.0 2.3 2 0 0 2 2 2 0 Tetraacyldisaccharide-1-P 4'-kinase LytR_C PF13399.6 BAD84842.1 - 0.036 15.1 0.3 0.24 12.4 0.3 2.5 1 1 0 1 1 1 0 LytR cell envelope-related transcriptional attenuator Glyco_trans_4_2 PF13477.6 BAD84842.1 - 0.036 14.1 0.1 1.7 8.6 0.1 2.3 1 1 0 1 1 1 0 Glycosyl transferase 4-like TPP_enzyme_M PF00205.22 BAD84842.1 - 0.037 13.8 0.2 12 5.7 0.0 2.8 3 0 0 3 3 2 0 Thiamine pyrophosphate enzyme, central domain DUF2855 PF11017.8 BAD84842.1 - 0.039 13.7 0.8 0.058 13.1 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2855) NB-ARC PF00931.22 BAD84842.1 - 0.04 13.1 0.0 0.093 11.9 0.0 1.7 1 0 0 1 1 1 0 NB-ARC domain ResIII PF04851.15 BAD84842.1 - 0.043 13.8 0.4 0.043 13.8 0.4 1.9 1 1 1 2 2 2 0 Type III restriction enzyme, res subunit ATP_bind_1 PF03029.17 BAD84842.1 - 0.05 13.4 0.1 0.17 11.6 0.1 2.1 1 1 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_24 PF13479.6 BAD84842.1 - 0.062 13.0 0.0 0.13 12.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain Glyco_transf_4 PF13439.6 BAD84842.1 - 0.063 13.3 0.1 0.25 11.3 0.1 2.0 1 1 0 1 1 1 0 Glycosyltransferase Family 4 AAA PF00004.29 BAD84842.1 - 0.09 13.2 0.1 0.33 11.4 0.1 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) FACT-Spt16_Nlob PF14826.6 BAD84842.1 - 0.095 12.5 4.7 0.36 10.6 0.2 2.8 3 1 0 3 3 2 0 FACT complex subunit SPT16 N-terminal lobe domain KAP_NTPase PF07693.14 BAD84842.1 - 0.096 11.9 0.8 0.3 10.3 0.2 2.1 1 1 1 2 2 2 0 KAP family P-loop domain ANF_receptor PF01094.28 BAD84842.1 - 0.12 11.4 0.1 1.1 8.2 0.1 2.0 1 1 0 1 1 1 0 Receptor family ligand binding region Pox_A32 PF04665.12 BAD84842.1 - 0.16 11.4 0.0 0.32 10.4 0.0 1.5 1 0 0 1 1 1 0 Poxvirus A32 protein AAA_7 PF12775.7 BAD84842.1 - 0.18 11.3 0.2 0.47 9.9 0.0 1.8 2 0 0 2 2 1 0 P-loop containing dynein motor region Sfi1 PF08457.10 BAD84842.1 - 0.24 9.9 0.1 0.44 9.0 0.1 1.3 1 0 0 1 1 1 0 Sfi1 spindle body protein Sirohm_synth_C PF14823.6 BAD84842.1 - 0.24 11.0 1.0 26 4.5 0.2 2.7 2 0 0 2 2 2 0 Sirohaem biosynthesis protein C-terminal Nif11 PF07862.11 BAD84842.1 - 0.35 11.2 3.0 39 4.6 0.1 3.5 3 0 0 3 3 3 0 Nif11 domain DUF1844 PF08899.11 BAD84842.1 - 0.78 10.1 3.6 17 5.8 0.3 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF1844) AAA_15 PF13175.6 BAD84842.1 - 3.1 7.4 11.2 0.32 10.6 0.3 2.3 1 1 1 2 2 2 0 AAA ATPase domain DUF87 PF01935.17 BAD84842.1 - 4 7.5 8.8 2.1 8.4 0.3 2.4 1 1 1 2 2 2 0 Helicase HerA, central domain APG6_N PF17675.1 BAD84842.1 - 7.8 7.0 11.6 18 5.9 11.6 1.5 1 0 0 1 1 1 0 Apg6 coiled-coil region OrfB_Zn_ribbon PF07282.11 BAD84843.1 - 1.7e-16 59.9 0.1 3.5e-16 58.9 0.1 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 BAD84843.1 - 0.00025 21.3 0.0 0.00025 21.3 0.0 2.3 3 1 0 3 3 3 1 Probable transposase Prok-RING_1 PF14446.6 BAD84843.1 - 0.0052 16.7 0.2 0.0081 16.1 0.2 1.3 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 RNA_POL_M_15KD PF02150.16 BAD84843.1 - 0.029 14.3 0.4 0.054 13.4 0.4 1.4 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit DZR PF12773.7 BAD84843.1 - 0.052 13.6 0.5 0.092 12.8 0.5 1.3 1 0 0 1 1 1 0 Double zinc ribbon Ribosomal_L32p PF01783.23 BAD84843.1 - 0.065 13.5 0.4 0.21 11.9 0.2 2.0 2 0 0 2 2 2 0 Ribosomal L32p protein family DNA_ligase_ZBD PF03119.16 BAD84843.1 - 0.076 13.1 1.6 0.14 12.2 1.6 1.4 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain Auto_anti-p27 PF06677.12 BAD84843.1 - 0.091 12.9 1.0 0.18 12.0 1.0 1.5 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-ribbon_3 PF13248.6 BAD84843.1 - 0.14 11.6 1.7 0.28 10.7 1.7 1.4 1 0 0 1 1 1 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 BAD84843.1 - 0.51 9.9 6.4 0.15 11.6 2.4 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding Rubredoxin_2 PF18073.1 BAD84843.1 - 1 9.2 6.7 5.2 6.9 0.3 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain Resolvase PF00239.21 BAD84844.1 - 1.4e-26 93.4 0.0 1.8e-26 93.0 0.0 1.1 1 0 0 1 1 1 1 Resolvase, N terminal domain HTH_17 PF12728.7 BAD84844.1 - 1.1e-12 47.9 0.1 2.8e-12 46.6 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain MerR PF00376.23 BAD84844.1 - 7.9e-11 41.5 0.3 4.1e-10 39.3 0.1 2.3 2 1 0 2 2 2 1 MerR family regulatory protein MerR_1 PF13411.6 BAD84844.1 - 8.3e-10 38.6 0.0 2.4e-09 37.1 0.0 1.8 1 0 0 1 1 1 1 MerR HTH family regulatory protein HTH_23 PF13384.6 BAD84844.1 - 0.00012 21.8 0.7 0.0037 17.0 0.0 2.8 3 0 0 3 3 3 1 Homeodomain-like domain HTH_28 PF13518.6 BAD84844.1 - 0.0052 16.9 0.0 0.023 14.8 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_29 PF13551.6 BAD84844.1 - 0.0053 16.8 0.0 0.016 15.2 0.0 1.9 1 1 0 1 1 1 1 Winged helix-turn helix AbiEi_4 PF13338.6 BAD84844.1 - 0.07 13.3 0.2 3.2 8.0 0.0 2.9 3 0 0 3 3 3 0 Transcriptional regulator, AbiEi antitoxin Terminase_5 PF06056.12 BAD84844.1 - 0.072 13.0 0.3 0.27 11.2 0.0 2.0 2 0 0 2 2 2 0 Putative ATPase subunit of terminase (gpP-like) GAD PF02938.14 BAD84844.1 - 0.078 13.2 0.9 0.77 10.0 0.1 2.5 1 1 1 3 3 3 0 GAD domain ANF_receptor PF01094.28 BAD84844.1 - 0.12 11.4 0.0 0.16 11.0 0.0 1.1 1 0 0 1 1 1 0 Receptor family ligand binding region Glyco_trans_4_2 PF13477.6 BAD84844.1 - 0.14 12.2 0.6 2.1 8.4 0.2 2.4 1 1 0 2 2 2 0 Glycosyl transferase 4-like SnoaL PF07366.12 BAD84845.1 - 0.23 11.3 0.0 0.35 10.7 0.0 1.3 1 0 0 1 1 1 0 SnoaL-like polyketide cyclase Bmp PF02608.14 BAD84846.1 - 4.9e-49 166.9 5.6 5.4e-30 104.4 0.2 2.7 2 1 0 2 2 2 2 ABC transporter substrate-binding protein PnrA-like Peripla_BP_1 PF00532.21 BAD84846.1 - 0.017 14.6 0.0 0.052 13.0 0.0 1.9 2 1 0 2 2 2 0 Periplasmic binding proteins and sugar binding domain of LacI family Endotoxin_C2 PF18449.1 BAD84846.1 - 0.041 14.2 0.1 0.15 12.4 0.1 1.9 1 0 0 1 1 1 0 Delta endotoxin ABC_tran PF00005.27 BAD84847.1 - 7.3e-47 159.3 0.0 4.4e-28 98.5 0.0 2.2 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 BAD84847.1 - 8.8e-07 29.0 0.7 0.0047 16.8 0.2 2.5 3 0 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 BAD84847.1 - 0.00025 20.7 0.3 0.14 12.0 0.2 3.1 3 0 0 3 3 3 1 P-loop containing region of AAA domain Bac_DnaA PF00308.18 BAD84847.1 - 0.0031 17.4 1.7 0.0068 16.3 0.1 2.3 2 0 0 2 2 2 1 Bacterial dnaA protein AAA_16 PF13191.6 BAD84847.1 - 0.008 16.6 0.1 0.021 15.2 0.0 1.9 2 1 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.19 BAD84847.1 - 0.024 14.0 1.7 9.2 5.6 0.0 3.2 3 0 0 3 3 3 0 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 BAD84847.1 - 0.041 14.4 0.1 0.1 13.1 0.1 1.7 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 BAD84847.1 - 0.046 13.6 0.7 0.91 9.4 0.0 3.0 4 0 0 4 4 4 0 RsgA GTPase AAA_24 PF13479.6 BAD84847.1 - 0.068 12.9 0.6 5.3 6.7 0.1 2.4 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 BAD84847.1 - 0.14 11.9 0.0 0.5 10.1 0.0 1.9 1 1 0 1 1 1 0 AAA domain TsaE PF02367.17 BAD84847.1 - 0.15 12.1 0.1 0.37 10.8 0.1 1.7 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE DUF3882 PF07066.11 BAD84847.1 - 0.15 12.1 0.0 0.31 11.1 0.0 1.5 1 0 0 1 1 1 0 Lactococcus phage M3 protein AAA_15 PF13175.6 BAD84847.1 - 0.16 11.6 0.4 0.45 10.2 0.1 1.7 1 1 1 2 2 2 0 AAA ATPase domain BPD_transp_2 PF02653.16 BAD84848.1 - 4.5e-41 140.8 27.2 4.5e-41 140.8 27.2 2.0 2 0 0 2 2 2 2 Branched-chain amino acid transport system / permease component Vpu PF00558.19 BAD84848.1 - 0.84 9.4 3.1 18 5.2 0.4 2.7 2 0 0 2 2 2 0 Vpu protein BPD_transp_2 PF02653.16 BAD84849.1 - 9.5e-40 136.4 30.0 1.2e-39 136.2 30.0 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component ZnuA PF01297.17 BAD84850.1 - 2.3e-33 115.7 0.2 2.7e-33 115.5 0.2 1.1 1 0 0 1 1 1 1 Zinc-uptake complex component A periplasmic T6SS-SciN PF12790.7 BAD84850.1 - 0.022 14.5 0.0 0.083 12.6 0.0 1.9 3 0 0 3 3 3 0 Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 NTP_transf_3 PF12804.7 BAD84850.1 - 0.066 13.6 0.0 0.15 12.4 0.0 1.5 1 0 0 1 1 1 0 MobA-like NTP transferase domain DUF4932 PF16286.5 BAD84851.1 - 4e-10 39.5 3.2 7.9e-09 35.2 0.4 2.6 2 0 0 2 2 2 2 Domain of unknown function (DUF4932) S_layer_C PF05124.12 BAD84851.1 - 0.12 12.3 0.1 1.4 8.8 0.0 2.2 2 0 0 2 2 2 0 S-layer like family, C-terminal region Mucin PF01456.17 BAD84851.1 - 1.4 8.9 28.5 2.4 8.2 28.5 1.3 1 0 0 1 1 1 0 Mucin-like glycoprotein Pribosyltran PF00156.27 BAD84853.1 - 8.2e-23 80.7 0.0 1.3e-22 80.0 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain FlhC PF05280.11 BAD84853.1 - 0.018 14.7 0.0 0.028 14.2 0.0 1.2 1 0 0 1 1 1 0 Flagellar transcriptional activator (FlhC) Succ_CoA_lig PF13607.6 BAD84854.1 - 1.4e-57 193.3 0.5 5.6e-57 191.4 0.2 2.1 3 0 0 3 3 3 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 BAD84854.1 - 2.4e-22 79.6 0.1 1.6e-20 73.7 0.1 2.5 2 0 0 2 2 2 1 CoA binding domain CoA_binding PF02629.19 BAD84854.1 - 2.6e-16 60.1 1.3 1.2e-15 58.0 0.7 2.4 2 0 0 2 2 2 1 CoA binding domain DUF4849 PF16141.5 BAD84854.1 - 0.15 11.3 0.0 0.25 10.5 0.0 1.3 1 0 0 1 1 1 0 Putative glycoside hydrolase Family 18, chitinase_18 SapB_1 PF05184.15 BAD84855.1 - 0.06 13.4 0.0 0.13 12.3 0.0 1.5 1 0 0 1 1 1 0 Saposin-like type B, region 1 Metallophos_2 PF12850.7 BAD84856.1 - 1.6e-31 109.8 0.0 1.9e-31 109.5 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 BAD84856.1 - 2.7e-15 57.4 0.1 3.2e-15 57.2 0.1 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase PRC PF05239.16 BAD84857.1 - 1.2e-13 50.9 1.4 1.5e-13 50.6 1.4 1.1 1 0 0 1 1 1 1 PRC-barrel domain EB1 PF03271.17 BAD84857.1 - 0.11 12.8 0.0 0.2 11.9 0.0 1.6 1 1 0 1 1 1 0 EB1-like C-terminal motif AAA PF00004.29 BAD84858.1 - 2.1e-103 342.0 0.6 4.8e-51 172.6 0.0 3.3 4 0 0 4 4 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.18 BAD84858.1 - 1.3e-31 108.6 0.2 3.2e-30 104.2 0.9 2.9 3 0 0 3 3 2 1 Cell division protein 48 (CDC48), N-terminal domain AAA_lid_3 PF17862.1 BAD84858.1 - 6.8e-30 102.6 6.3 5.2e-17 61.4 0.2 3.4 3 0 0 3 3 3 2 AAA+ lid domain RuvB_N PF05496.12 BAD84858.1 - 1.7e-17 63.6 0.0 1.6e-08 34.4 0.0 2.7 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_2 PF07724.14 BAD84858.1 - 6.8e-17 62.1 0.1 1.9e-08 34.6 0.0 3.0 3 0 0 3 3 3 2 AAA domain (Cdc48 subfamily) AAA_16 PF13191.6 BAD84858.1 - 2.7e-16 60.4 0.3 2.6e-06 27.9 0.0 4.2 3 2 1 4 4 3 2 AAA ATPase domain AAA_22 PF13401.6 BAD84858.1 - 1.3e-13 51.4 0.2 0.00039 20.7 0.0 4.5 2 2 1 3 3 3 2 AAA domain CDC48_2 PF02933.17 BAD84858.1 - 1.4e-13 50.4 0.5 4.3e-13 48.8 0.5 1.9 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 TIP49 PF06068.13 BAD84858.1 - 3.9e-13 49.3 0.1 7.9e-05 22.0 0.0 3.6 3 0 0 3 3 3 2 TIP49 P-loop domain AAA_5 PF07728.14 BAD84858.1 - 1.5e-12 47.7 0.5 5.1e-05 23.3 0.1 3.9 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_14 PF13173.6 BAD84858.1 - 2.9e-11 43.5 0.0 7.3e-05 22.8 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_33 PF13671.6 BAD84858.1 - 2.6e-10 40.6 0.0 0.00095 19.3 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.6 BAD84858.1 - 8.8e-09 36.0 0.2 0.016 15.7 0.0 3.8 4 0 0 4 4 3 2 AAA domain IstB_IS21 PF01695.17 BAD84858.1 - 2e-08 34.2 0.0 0.0077 16.0 0.0 2.8 2 0 0 2 2 2 2 IstB-like ATP binding protein Sigma54_activat PF00158.26 BAD84858.1 - 1.1e-07 31.7 0.1 0.013 15.2 0.1 3.6 3 1 0 3 3 3 2 Sigma-54 interaction domain AAA_24 PF13479.6 BAD84858.1 - 1.2e-07 31.7 0.0 0.011 15.5 0.0 2.7 2 0 0 2 2 2 2 AAA domain Vps4_C PF09336.10 BAD84858.1 - 1.6e-07 31.2 0.3 0.00043 20.2 0.1 2.9 2 0 0 2 2 2 2 Vps4 C terminal oligomerisation domain Bac_DnaA PF00308.18 BAD84858.1 - 2e-07 31.1 0.0 0.0018 18.2 0.0 2.9 3 0 0 3 3 2 2 Bacterial dnaA protein RNA_helicase PF00910.22 BAD84858.1 - 2.6e-07 31.0 0.0 0.03 14.7 0.0 2.7 2 0 0 2 2 2 2 RNA helicase Mg_chelatase PF01078.21 BAD84858.1 - 5.5e-07 29.2 0.1 0.039 13.3 0.0 2.6 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_28 PF13521.6 BAD84858.1 - 7.9e-07 29.5 0.0 0.056 13.7 0.0 2.8 2 0 0 2 2 2 2 AAA domain DUF815 PF05673.13 BAD84858.1 - 1.2e-06 27.9 0.0 0.027 13.6 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF815) AAA_25 PF13481.6 BAD84858.1 - 1.7e-06 27.7 4.6 0.49 9.9 1.4 4.4 3 1 0 3 3 3 2 AAA domain AAA_7 PF12775.7 BAD84858.1 - 2.3e-06 27.3 0.0 0.094 12.2 0.0 3.0 3 2 0 3 3 2 2 P-loop containing dynein motor region NACHT PF05729.12 BAD84858.1 - 6.5e-06 26.2 0.1 1 9.3 0.0 4.0 4 0 0 4 4 4 2 NACHT domain Zeta_toxin PF06414.12 BAD84858.1 - 6.6e-06 25.5 0.0 0.083 12.2 0.0 2.6 2 0 0 2 2 2 2 Zeta toxin ABC_tran PF00005.27 BAD84858.1 - 7.8e-06 26.4 0.0 0.13 12.8 0.0 3.0 2 0 0 2 2 2 2 ABC transporter ATPase_2 PF01637.18 BAD84858.1 - 9.5e-06 25.7 5.0 0.0062 16.5 0.0 3.5 4 1 1 5 5 3 2 ATPase domain predominantly from Archaea TsaE PF02367.17 BAD84858.1 - 1.8e-05 24.7 0.0 0.31 11.1 0.0 2.7 2 1 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_3 PF07726.11 BAD84858.1 - 5.9e-05 22.9 0.0 0.34 10.8 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) ATPase PF06745.13 BAD84858.1 - 6.5e-05 22.4 4.9 0.39 10.0 0.2 4.3 3 2 1 4 4 3 2 KaiC PhoH PF02562.16 BAD84858.1 - 6.8e-05 22.4 0.2 0.37 10.2 0.0 2.6 2 0 0 2 2 2 2 PhoH-like protein Parvo_NS1 PF01057.17 BAD84858.1 - 7e-05 22.1 0.0 0.36 9.9 0.0 2.3 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 DUF2075 PF09848.9 BAD84858.1 - 0.00012 21.4 0.0 0.19 10.9 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) AAA_11 PF13086.6 BAD84858.1 - 0.00015 21.7 0.1 0.99 9.1 0.0 3.1 3 0 0 3 3 3 2 AAA domain NB-ARC PF00931.22 BAD84858.1 - 0.00021 20.6 0.0 0.62 9.2 0.0 2.6 2 0 0 2 2 2 2 NB-ARC domain AAA_30 PF13604.6 BAD84858.1 - 0.00031 20.5 0.2 1.2 8.8 0.0 3.0 2 1 0 2 2 2 2 AAA domain AAA_17 PF13207.6 BAD84858.1 - 0.00046 20.6 2.5 3.1 8.2 0.0 4.1 4 0 0 4 4 3 1 AAA domain TniB PF05621.11 BAD84858.1 - 0.00053 19.5 0.1 17 4.8 0.0 4.2 3 1 1 4 4 4 0 Bacterial TniB protein AAA_19 PF13245.6 BAD84858.1 - 0.0011 19.3 2.4 2.8 8.3 0.1 3.3 2 2 1 3 3 3 2 AAA domain NTPase_1 PF03266.15 BAD84858.1 - 0.0022 17.9 2.9 5.7 6.8 0.0 4.5 3 2 2 5 5 4 0 NTPase Viral_helicase1 PF01443.18 BAD84858.1 - 0.0026 17.5 0.0 0.18 11.5 0.0 2.6 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase Zot PF05707.12 BAD84858.1 - 0.0044 16.7 0.0 0.71 9.5 0.0 2.8 2 1 0 2 2 2 1 Zonular occludens toxin (Zot) SKI PF01202.22 BAD84858.1 - 0.0063 16.7 0.2 9.1 6.4 0.0 3.7 3 0 0 3 3 3 0 Shikimate kinase Sigma54_activ_2 PF14532.6 BAD84858.1 - 0.0072 16.4 0.0 5.8 7.0 0.0 2.5 2 0 0 2 2 2 0 Sigma-54 interaction domain DUF1707 PF08044.11 BAD84858.1 - 0.01 15.9 0.3 0.89 9.7 0.1 3.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1707) AFG1_ATPase PF03969.16 BAD84858.1 - 0.016 14.1 0.0 5.8 5.7 0.0 2.7 2 0 0 2 2 2 0 AFG1-like ATPase T2SSE PF00437.20 BAD84858.1 - 0.02 13.9 0.0 5.9 5.9 0.0 2.6 2 1 0 2 2 2 0 Type II/IV secretion system protein Cytidylate_kin PF02224.18 BAD84858.1 - 0.037 13.7 3.7 6.1 6.5 0.0 3.3 4 0 0 4 4 3 0 Cytidylate kinase IPT PF01745.16 BAD84858.1 - 0.058 12.8 0.8 15 4.9 0.0 3.1 3 0 0 3 3 2 0 Isopentenyl transferase cobW PF02492.19 BAD84858.1 - 0.062 12.9 0.0 16 5.0 0.0 2.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain DUF1905 PF08922.11 BAD84858.1 - 0.094 12.8 0.9 25 5.0 0.0 3.8 4 0 0 4 4 3 0 Domain of unknown function (DUF1905) DAP3 PF10236.9 BAD84858.1 - 0.11 11.6 0.0 15 4.6 0.0 2.6 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 CPT PF07931.12 BAD84858.1 - 0.12 12.2 0.0 26 4.6 0.0 3.1 2 1 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein PduV-EutP PF10662.9 BAD84858.1 - 0.13 12.0 0.0 20 4.9 0.0 2.5 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation DS PF01916.17 BAD84860.1 - 1.6e-112 375.5 0.0 1.8e-112 375.3 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase BLI1 PF17324.2 BAD84860.1 - 0.13 12.9 0.1 0.26 12.0 0.1 1.4 1 0 0 1 1 1 0 BLOC-1 interactor 1 Pyr_redox_2 PF07992.14 BAD84861.1 - 2.3e-28 99.3 0.1 6e-28 97.9 0.1 1.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 BAD84861.1 - 3.5e-13 49.9 5.7 3.6e-07 30.6 1.1 3.3 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 BAD84861.1 - 1e-11 44.6 0.9 1.4e-06 27.8 0.0 3.0 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 BAD84861.1 - 1e-06 28.8 0.2 1e-06 28.8 0.2 1.7 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 BAD84861.1 - 3.9e-06 26.7 12.6 0.001 18.8 0.8 3.9 2 2 2 4 4 4 2 FAD dependent oxidoreductase HI0933_like PF03486.14 BAD84861.1 - 4e-05 22.5 0.3 8.6e-05 21.4 0.3 1.6 1 0 0 1 1 1 1 HI0933-like protein FAD_binding_3 PF01494.19 BAD84861.1 - 8.3e-05 22.0 0.1 0.00014 21.3 0.1 1.3 1 0 0 1 1 1 1 FAD binding domain Thi4 PF01946.17 BAD84861.1 - 0.00012 21.4 0.6 0.00021 20.6 0.1 1.6 2 0 0 2 2 2 1 Thi4 family Shikimate_DH PF01488.20 BAD84861.1 - 0.00013 22.1 0.0 1.3 9.1 0.1 4.0 3 1 1 4 4 4 1 Shikimate / quinate 5-dehydrogenase FAD_binding_2 PF00890.24 BAD84861.1 - 0.00015 21.0 0.3 0.00015 21.0 0.3 2.2 1 1 1 2 2 2 1 FAD binding domain FMO-like PF00743.19 BAD84861.1 - 0.0028 16.1 0.0 0.18 10.2 0.0 2.2 2 0 0 2 2 2 1 Flavin-binding monooxygenase-like NAD_binding_9 PF13454.6 BAD84861.1 - 0.0066 16.4 3.3 0.013 15.5 0.2 2.7 3 0 0 3 3 3 1 FAD-NAD(P)-binding FAD_oxidored PF12831.7 BAD84861.1 - 0.0079 15.6 0.4 0.05 12.9 0.1 2.0 2 0 0 2 2 2 1 FAD dependent oxidoreductase AlaDh_PNT_C PF01262.21 BAD84861.1 - 0.015 14.6 1.5 0.24 10.7 0.0 2.3 2 1 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain 2-Hacid_dh_C PF02826.19 BAD84861.1 - 0.016 14.6 0.5 9.1 5.6 0.1 3.1 3 0 0 3 3 3 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 BAD84861.1 - 0.036 13.9 1.1 0.07 13.0 0.1 1.9 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K_oxygenase PF13434.6 BAD84861.1 - 0.053 12.7 0.1 1.1 8.4 0.0 2.3 2 1 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) PALP PF00291.25 BAD84861.1 - 0.057 12.8 0.0 4.8 6.5 0.0 2.1 2 0 0 2 2 2 0 Pyridoxal-phosphate dependent enzyme GIDA PF01134.22 BAD84861.1 - 0.081 12.0 3.5 0.064 12.3 1.1 2.0 2 0 0 2 2 2 0 Glucose inhibited division protein A Amino_oxidase PF01593.24 BAD84861.1 - 0.093 12.0 0.1 0.61 9.3 0.0 2.0 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase NAD_binding_7 PF13241.6 BAD84861.1 - 0.13 12.7 0.6 10 6.6 0.3 2.5 2 1 0 2 2 2 0 Putative NAD(P)-binding MCRA PF06100.11 BAD84861.1 - 0.18 10.6 0.0 0.28 9.9 0.0 1.3 1 0 0 1 1 1 0 MCRA family adh_short_C2 PF13561.6 BAD84862.1 - 1.8e-32 112.8 0.0 2.4e-32 112.4 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 BAD84862.1 - 7.6e-26 90.8 0.0 9e-26 90.5 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase NAD_binding_10 PF13460.6 BAD84862.1 - 0.00047 20.1 0.0 0.00071 19.5 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding KR PF08659.10 BAD84862.1 - 0.0033 17.3 0.0 0.0053 16.7 0.0 1.4 1 0 0 1 1 1 1 KR domain NmrA PF05368.13 BAD84862.1 - 0.0062 16.1 0.1 0.011 15.4 0.1 1.3 1 0 0 1 1 1 1 NmrA-like family Polbeta PF18765.1 BAD84863.1 - 2e-07 31.0 0.0 7.5e-07 29.2 0.0 1.9 1 1 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 BAD84863.1 - 2.4e-07 30.9 0.3 3.7e-07 30.3 0.3 1.4 1 1 0 1 1 1 1 Nucleotidyltransferase domain Radical_SAM PF04055.21 BAD84864.1 - 2.7e-16 60.4 0.1 1.3e-15 58.2 0.0 2.1 2 1 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 BAD84864.1 - 2.9e-11 43.8 0.0 8.8e-11 42.2 0.0 1.9 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 BAD84864.1 - 1.2e-06 28.7 0.0 3e-06 27.4 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.6 BAD84864.1 - 2.9e-05 24.5 0.7 7.6e-05 23.1 0.7 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Atypical_Card PF18461.1 BAD84864.1 - 0.0013 18.9 0.0 0.65 10.2 0.0 2.9 3 0 0 3 3 3 2 Atypical caspase recruitment domain ABC_tran PF00005.27 BAD84865.1 - 1.7e-28 99.8 0.0 2.7e-28 99.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.23 BAD84865.1 - 1.5e-25 90.4 8.5 1.9e-25 90.1 8.5 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region SMC_N PF02463.19 BAD84865.1 - 0.00015 21.3 1.6 0.00055 19.4 0.1 2.0 1 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 BAD84865.1 - 0.001 19.0 1.7 0.81 9.4 0.3 2.5 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 BAD84865.1 - 0.0025 18.2 0.0 0.0051 17.2 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 BAD84865.1 - 0.0098 15.8 0.0 0.024 14.5 0.0 1.6 1 0 0 1 1 1 1 RsgA GTPase SbcCD_C PF13558.6 BAD84865.1 - 0.011 16.0 0.0 0.021 15.1 0.0 1.5 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit DEAD PF00270.29 BAD84865.1 - 0.014 15.2 0.0 0.024 14.4 0.0 1.3 1 0 0 1 1 1 0 DEAD/DEAH box helicase AAA PF00004.29 BAD84865.1 - 0.034 14.6 1.1 0.44 11.0 1.1 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.17 BAD84865.1 - 0.039 13.7 0.1 0.22 11.3 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_22 PF13401.6 BAD84865.1 - 0.053 13.8 3.1 2 8.7 0.4 2.9 3 0 0 3 3 3 0 AAA domain TIP49 PF06068.13 BAD84865.1 - 0.14 11.3 0.0 0.26 10.4 0.0 1.4 1 0 0 1 1 1 0 TIP49 P-loop domain Mg_chelatase PF01078.21 BAD84865.1 - 0.14 11.5 0.5 0.31 10.4 0.0 1.7 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 BAD84865.1 - 0.17 11.9 0.4 0.86 9.6 0.3 2.3 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) RuvB_N PF05496.12 BAD84865.1 - 0.21 11.3 1.0 0.7 9.6 0.1 2.1 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain AAA_24 PF13479.6 BAD84865.1 - 0.26 11.0 1.2 0.34 10.6 0.3 1.6 2 0 0 2 2 2 0 AAA domain DUF5391 PF17369.2 BAD84865.1 - 0.31 11.1 4.2 0.2 11.7 1.1 2.1 2 0 0 2 2 2 0 Family of unknown function (DUF5391) Peptidase_M48 PF01435.18 BAD84866.1 - 7e-37 127.1 0.0 9.2e-37 126.7 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 BAD84866.1 - 0.00077 18.7 0.0 0.0017 17.6 0.0 1.6 2 0 0 2 2 2 1 BlaR1 peptidase M56 Abhydrolase_9_N PF15420.6 BAD84866.1 - 0.28 11.2 3.8 7.5 6.5 0.4 2.2 2 0 0 2 2 2 0 Alpha/beta-hydrolase family N-terminus AI-2E_transport PF01594.16 BAD84866.1 - 0.59 9.2 13.5 0.032 13.4 7.2 1.9 2 0 0 2 2 2 0 AI-2E family transporter Bacteriocin_IIc PF10439.9 BAD84866.1 - 0.97 9.6 5.5 0.44 10.7 0.3 2.7 2 1 1 3 3 3 0 Bacteriocin class II with double-glycine leader peptide DUF4235 PF14019.6 BAD84866.1 - 5.1 7.2 7.4 1.3 9.2 2.3 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF4235) Cpn60_TCP1 PF00118.24 BAD84867.1 - 1.7e-183 610.8 23.8 1.9e-183 610.6 23.8 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family AAA_5 PF07728.14 BAD84867.1 - 0.021 14.8 0.4 0.18 11.8 0.0 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) DUF3924 PF13062.6 BAD84867.1 - 0.037 14.0 0.1 0.16 11.9 0.1 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF3924) baeRF_family3 PF18845.1 BAD84867.1 - 0.13 12.5 0.6 0.31 11.3 0.6 1.6 1 0 0 1 1 1 0 Bacterial archaeo-eukaryotic release factor family 3 baeRF_family10 PF18854.1 BAD84867.1 - 0.25 11.6 4.2 2.4 8.4 0.1 3.1 2 1 1 3 3 3 0 Bacterial archaeo-eukaryotic release factor family 10 RIO1 PF01163.22 BAD84868.1 - 3.4e-16 59.4 0.0 5.2e-16 58.8 0.0 1.2 1 0 0 1 1 1 1 RIO1 family Pkinase PF00069.25 BAD84868.1 - 1.6e-13 50.6 0.2 2.1e-13 50.2 0.2 1.1 1 0 0 1 1 1 1 Protein kinase domain Kdo PF06293.14 BAD84868.1 - 1.1e-12 47.7 0.2 1.8e-12 47.1 0.2 1.3 1 0 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.23 BAD84868.1 - 4e-11 43.3 2.8 1.1e-05 25.5 0.4 2.4 1 1 1 2 2 2 2 Phosphotransferase enzyme family Pkinase_Tyr PF07714.17 BAD84868.1 - 1.7e-09 37.4 0.1 2.1e-09 37.0 0.1 1.1 1 0 0 1 1 1 1 Protein tyrosine kinase WaaY PF06176.11 BAD84868.1 - 0.00065 19.4 0.0 0.00093 18.9 0.0 1.2 1 0 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) EcKinase PF02958.20 BAD84868.1 - 0.0028 17.0 0.0 0.0059 15.9 0.0 1.6 1 1 0 1 1 1 1 Ecdysteroid kinase FTA2 PF13095.6 BAD84868.1 - 0.022 14.4 0.1 0.085 12.5 0.0 1.8 1 1 1 2 2 2 0 Kinetochore Sim4 complex subunit FTA2 Choline_kinase PF01633.20 BAD84868.1 - 0.029 13.9 0.0 0.059 12.9 0.0 1.6 1 1 0 1 1 1 0 Choline/ethanolamine kinase Pkinase_fungal PF17667.1 BAD84868.1 - 0.051 12.3 0.1 0.12 11.2 0.0 1.4 1 1 0 1 1 1 0 Fungal protein kinase Kinase-like PF14531.6 BAD84868.1 - 0.075 12.3 0.0 0.11 11.8 0.0 1.2 1 0 0 1 1 1 0 Kinase-like DUF1679 PF07914.11 BAD84868.1 - 0.13 11.0 0.0 0.47 9.3 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1679) DUF4990 PF16380.5 BAD84868.1 - 0.17 12.0 0.0 0.26 11.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function Rhomboid PF01694.22 BAD84869.1 - 4.1e-05 23.6 13.4 4.1e-05 23.6 13.4 2.4 1 1 1 2 2 2 1 Rhomboid family PRA1 PF03208.19 BAD84869.1 - 2.3 7.8 13.8 1 9.0 5.0 2.3 2 0 0 2 2 2 0 PRA1 family protein MutS_V PF00488.21 BAD84871.1 - 2.9e-07 30.7 0.0 5.2e-07 29.9 0.0 1.4 1 0 0 1 1 1 1 MutS domain V AAA_21 PF13304.6 BAD84871.1 - 4.7e-05 23.3 6.1 0.024 14.4 0.1 3.2 3 1 1 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 BAD84871.1 - 0.00038 21.0 2.5 0.21 12.1 0.0 3.0 2 1 0 2 2 2 2 AAA domain AAA_28 PF13521.6 BAD84871.1 - 0.00046 20.5 0.0 0.0012 19.2 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.6 BAD84871.1 - 0.0054 16.8 0.0 0.015 15.3 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 BAD84871.1 - 0.019 15.4 0.0 0.056 13.9 0.0 1.8 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) CPT PF07931.12 BAD84871.1 - 0.033 14.0 0.0 0.1 12.4 0.0 1.9 1 1 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein AAA_16 PF13191.6 BAD84871.1 - 0.042 14.2 0.7 4.1 7.8 0.0 3.3 2 2 0 2 2 2 0 AAA ATPase domain CdvA PF18822.1 BAD84871.1 - 1.2 9.0 8.1 6.8 6.6 0.2 2.9 1 1 1 2 2 2 0 CdvA-like coiled-coil domain AAA_15 PF13175.6 BAD84871.1 - 5.9 6.5 7.3 4.7 6.8 0.2 3.1 3 1 0 3 3 3 0 AAA ATPase domain 2-Hacid_dh_C PF02826.19 BAD84872.1 - 2.4e-68 229.0 0.0 3.4e-68 228.5 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 BAD84872.1 - 3e-36 124.0 0.0 3.4e-36 123.8 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 BAD84872.1 - 3e-08 34.0 0.0 8e-08 32.6 0.0 1.7 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 BAD84872.1 - 6e-07 30.0 0.0 1.3e-06 28.9 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.12 BAD84872.1 - 6.9e-06 25.7 0.0 1.5e-05 24.7 0.0 1.5 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain AdoHcyase_NAD PF00670.21 BAD84872.1 - 1.5e-05 25.2 0.0 0.0002 21.5 0.0 2.4 2 1 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain PDH PF02153.17 BAD84872.1 - 3e-05 23.1 0.0 5e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 Prephenate dehydrogenase NAD_binding_7 PF13241.6 BAD84872.1 - 0.00018 21.9 0.0 0.00072 20.0 0.0 1.9 2 0 0 2 2 2 1 Putative NAD(P)-binding AlaDh_PNT_C PF01262.21 BAD84872.1 - 0.0066 15.8 0.0 0.039 13.2 0.0 2.1 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Rossmann-like PF10727.9 BAD84872.1 - 0.015 15.1 0.0 0.029 14.2 0.0 1.4 1 0 0 1 1 1 0 Rossmann-like domain Shikimate_DH PF01488.20 BAD84872.1 - 0.018 15.1 0.0 0.054 13.6 0.0 1.7 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase Gp_dh_N PF00044.24 BAD84872.1 - 0.075 13.4 1.3 0.19 12.1 1.3 1.7 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain XdhC_C PF13478.6 BAD84872.1 - 0.08 13.4 0.0 0.19 12.2 0.0 1.6 1 0 0 1 1 1 0 XdhC Rossmann domain GFO_IDH_MocA PF01408.22 BAD84872.1 - 0.089 13.6 0.0 0.23 12.3 0.0 1.7 2 0 0 2 2 1 0 Oxidoreductase family, NAD-binding Rossmann fold Sacchrp_dh_NADP PF03435.18 BAD84872.1 - 0.11 12.8 0.2 0.93 9.8 0.2 2.6 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain DUF3098 PF11297.8 BAD84872.1 - 0.13 11.9 0.0 0.28 10.8 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3098) Trp_Tyr_perm PF03222.13 BAD84873.1 - 4.4e-28 98.4 32.4 3.5e-27 95.5 32.4 1.9 1 1 0 1 1 1 1 Tryptophan/tyrosine permease family Aa_trans PF01490.18 BAD84873.1 - 2.6e-20 72.5 27.8 5.7e-19 68.1 27.8 2.1 1 1 0 1 1 1 1 Transmembrane amino acid transporter protein Spore_permease PF03845.13 BAD84873.1 - 3.5e-05 22.8 19.2 3.5e-05 22.8 19.2 2.0 2 2 0 2 2 2 1 Spore germination protein Nramp PF01566.18 BAD84873.1 - 0.0034 16.4 26.3 0.0054 15.7 17.1 2.1 2 0 0 2 2 2 2 Natural resistance-associated macrophage protein COX2-transmemb PF09125.10 BAD84873.1 - 0.0042 16.8 4.8 0.027 14.3 0.4 3.0 2 0 0 2 2 2 1 Cytochrome C oxidase subunit II, transmembrane SIR2 PF02146.17 BAD84874.1 - 1.4e-60 204.2 0.0 1.7e-60 204.0 0.0 1.1 1 0 0 1 1 1 1 Sir2 family TPP_enzyme_M PF00205.22 BAD84874.1 - 0.0068 16.1 0.0 0.041 13.6 0.0 2.0 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain Zn-ribbon_8 PF09723.10 BAD84874.1 - 0.015 15.4 2.2 0.046 13.8 2.2 1.8 1 1 0 1 1 1 0 Zinc ribbon domain HypA PF01155.19 BAD84874.1 - 0.034 14.2 0.1 0.22 11.6 0.1 2.1 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA RNA_POL_M_15KD PF02150.16 BAD84874.1 - 0.075 12.9 1.3 1.8 8.5 0.1 2.3 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit zf-ribbon_3 PF13248.6 BAD84874.1 - 0.13 11.7 0.3 0.13 11.7 0.3 1.9 2 0 0 2 2 2 0 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.12 BAD84874.1 - 0.5 10.4 2.1 0.97 9.4 2.1 1.4 1 0 0 1 1 1 0 PhnA Zinc-Ribbon HAD_2 PF13419.6 BAD84875.1 - 9.9e-34 117.0 0.0 1.4e-33 116.4 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 BAD84875.1 - 3.9e-21 76.3 0.0 3e-20 73.4 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 BAD84875.1 - 5.6e-17 61.6 0.0 1.2e-16 60.5 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 BAD84875.1 - 2.7e-08 34.4 0.6 3.8e-08 34.0 0.1 1.5 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase PGP_phosphatase PF09419.10 BAD84875.1 - 3.5e-05 23.5 0.0 0.0011 18.5 0.0 2.2 2 0 0 2 2 2 1 Mitochondrial PGP phosphatase ASCH PF04266.14 BAD84876.1 - 1.3e-21 77.2 0.2 1.9e-21 76.6 0.2 1.2 1 0 0 1 1 1 1 ASCH domain GTP_EFTU_D2 PF03144.25 BAD84876.1 - 0.076 13.4 0.5 2.2 8.7 0.1 2.5 3 0 0 3 3 3 0 Elongation factor Tu domain 2 PAP2 PF01569.21 BAD84877.1 - 2.2e-18 66.3 1.4 2.2e-18 66.3 1.4 2.0 2 1 1 3 3 3 1 PAP2 superfamily PAP2_3 PF14378.6 BAD84877.1 - 9e-06 25.5 9.3 2.5e-05 24.0 9.2 1.7 1 1 0 1 1 1 1 PAP2 superfamily PAP2_C PF14360.6 BAD84877.1 - 0.11 13.0 0.2 0.11 13.0 0.2 2.3 3 0 0 3 3 3 0 PAP2 superfamily C-terminal DUF3852 PF12963.7 BAD84877.1 - 0.13 12.6 1.5 0.31 11.4 1.5 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3852) Sm_multidrug_ex PF06695.11 BAD84878.1 - 2.5e-29 102.4 3.1 3.1e-29 102.1 3.1 1.1 1 0 0 1 1 1 1 Putative small multi-drug export protein Molybdopterin PF00384.22 BAD84879.1 - 7.9e-47 160.2 0.0 3.2e-46 158.2 0.0 1.8 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 BAD84879.1 - 1.9e-22 79.3 0.0 4.3e-22 78.2 0.0 1.6 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 BAD84879.1 - 1.8e-06 27.8 0.0 3.3e-06 27.0 0.0 1.4 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain DUF835 PF05763.12 BAD84880.1 - 2.8e-36 124.2 0.0 5.2e-36 123.4 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF835) DUF872 PF05915.12 BAD84880.1 - 0.25 11.5 2.3 0.65 10.2 2.3 1.7 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF872) ABC2_membrane_3 PF12698.7 BAD84881.1 - 3.9e-09 36.1 18.9 6e-09 35.5 18.9 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 BAD84881.1 - 6.4e-05 23.0 13.0 0.00037 20.5 13.0 2.1 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 BAD84881.1 - 0.21 10.8 16.9 0.87 8.8 15.5 2.2 1 1 1 2 2 2 0 ABC-2 family transporter protein MerC PF03203.14 BAD84881.1 - 1.2 9.6 8.2 1e+02 3.4 8.2 2.4 1 1 0 1 1 1 0 MerC mercury resistance protein DUF2070 PF09843.9 BAD84881.1 - 2.1 6.6 15.9 4.7 5.4 15.9 1.5 1 1 0 1 1 1 0 Predicted membrane protein (DUF2070) ABC2_membrane_3 PF12698.7 BAD84882.1 - 1.8e-06 27.3 21.6 7.5e-06 25.3 21.6 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 BAD84882.1 - 8.2e-05 22.1 14.3 8.2e-05 22.1 14.3 2.0 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_4 PF12730.7 BAD84882.1 - 0.0064 16.5 9.8 0.016 15.2 9.7 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein DUF308 PF03729.13 BAD84882.1 - 0.021 15.1 4.9 0.021 15.1 4.9 3.2 3 1 0 3 3 3 0 Short repeat of unknown function (DUF308) ABC2_membrane_2 PF12679.7 BAD84882.1 - 3.3 6.9 14.5 5.3 6.2 14.2 1.7 1 1 0 1 1 1 0 ABC-2 family transporter protein Claudin_2 PF13903.6 BAD84882.1 - 6.5 6.4 11.5 0.033 14.0 1.7 2.0 2 1 1 3 3 3 0 PMP-22/EMP/MP20/Claudin tight junction ABC_tran PF00005.27 BAD84883.1 - 1.2e-27 97.1 0.0 2e-27 96.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 BAD84883.1 - 4.3e-13 49.7 0.4 3e-09 37.1 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 BAD84883.1 - 7.4e-06 26.6 0.2 1.9e-05 25.3 0.2 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_15 PF13175.6 BAD84883.1 - 1.3e-05 25.1 0.0 0.11 12.2 0.0 2.1 1 1 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 BAD84883.1 - 7.7e-05 23.3 0.1 0.00017 22.1 0.1 1.5 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 BAD84883.1 - 0.0017 18.7 0.1 0.0082 16.6 0.1 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 BAD84883.1 - 0.037 13.9 0.0 0.059 13.3 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_30 PF13604.6 BAD84883.1 - 0.082 12.6 0.0 0.16 11.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 BAD84883.1 - 0.091 12.4 0.1 0.18 11.4 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain TBPIP_N PF15517.6 BAD84883.1 - 0.15 12.1 0.1 0.48 10.5 0.0 1.8 2 0 0 2 2 2 0 TBP-interacting protein N-terminus RHH_1 PF01402.21 BAD84884.1 - 1.1e-06 28.3 0.1 5.7e-06 26.1 0.0 2.2 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family HicB_lk_antitox PF15919.5 BAD84884.1 - 0.00096 19.3 0.1 0.0029 17.7 0.0 1.8 2 0 0 2 2 2 1 HicB_like antitoxin of bacterial toxin-antitoxin system RHH_8 PF17723.1 BAD84884.1 - 0.0063 16.7 0.0 0.007 16.5 0.0 1.2 1 0 0 1 1 1 1 Ribbon-Helix-Helix transcriptional regulator family sCache_2 PF17200.4 BAD84884.1 - 0.033 14.0 0.2 0.043 13.7 0.2 1.3 1 0 0 1 1 1 0 Single Cache domain 2 DUF3437 PF11919.8 BAD84884.1 - 0.035 14.0 0.2 0.056 13.4 0.2 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF3437) PIN_3 PF13470.6 BAD84885.1 - 9.3e-16 58.6 0.0 1.2e-15 58.3 0.0 1.2 1 0 0 1 1 1 1 PIN domain PIN_2 PF10130.9 BAD84885.1 - 0.01 16.1 0.0 0.015 15.5 0.0 1.5 1 1 0 1 1 1 0 PIN domain PIN PF01850.21 BAD84885.1 - 0.02 15.4 0.1 0.054 14.0 0.1 1.8 1 1 0 1 1 1 0 PIN domain PsbH PF00737.20 BAD84885.1 - 0.14 11.9 0.0 0.28 10.9 0.0 1.5 1 0 0 1 1 1 0 Photosystem II 10 kDa phosphoprotein HTH_10 PF04967.12 BAD84886.1 - 8.9e-21 73.5 0.0 1.3e-20 72.9 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.6 BAD84886.1 - 3.4e-05 23.3 0.0 7.6e-05 22.2 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Sigma70_r4 PF04545.16 BAD84886.1 - 0.00026 20.5 0.0 0.00049 19.6 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_5 PF01022.20 BAD84886.1 - 0.00061 19.6 0.0 0.0012 18.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Sigma70_r4_2 PF08281.12 BAD84886.1 - 0.00068 19.3 0.0 0.0014 18.3 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 CHASE9 PF17153.4 BAD84886.1 - 0.0032 17.6 0.0 0.0061 16.7 0.0 1.4 1 0 0 1 1 1 1 Periplasmic sensor domain, extracellular HTH_AsnC-type PF13404.6 BAD84886.1 - 0.0045 16.8 0.0 0.021 14.6 0.0 2.0 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain Fe_dep_repress PF01325.19 BAD84886.1 - 0.018 15.2 0.0 0.048 13.9 0.0 1.8 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_17 PF12728.7 BAD84886.1 - 0.034 14.3 0.0 0.13 12.5 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_IclR PF09339.10 BAD84886.1 - 0.043 13.6 0.6 0.073 12.9 0.0 1.6 2 0 0 2 2 1 0 IclR helix-turn-helix domain MarR_2 PF12802.7 BAD84886.1 - 0.061 13.2 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 MarR family AbiEi_4 PF13338.6 BAD84886.1 - 0.079 13.1 0.0 0.23 11.6 0.0 1.8 1 0 0 1 1 1 0 Transcriptional regulator, AbiEi antitoxin HTH_Crp_2 PF13545.6 BAD84886.1 - 0.089 12.8 0.0 0.18 11.8 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain LexA_DNA_bind PF01726.16 BAD84886.1 - 0.15 11.8 0.2 0.45 10.3 0.2 1.9 1 1 0 1 1 1 0 LexA DNA binding domain HTH_AraC PF00165.23 BAD84886.1 - 0.15 12.2 0.0 0.63 10.2 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix proteins, AraC family PmbA_TldD PF01523.16 BAD84887.1 - 1.7e-50 172.4 0.8 2.3e-50 172.0 0.8 1.2 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.16 BAD84888.1 - 1e-54 186.3 0.0 1.6e-54 185.7 0.0 1.3 1 0 0 1 1 1 1 Putative modulator of DNA gyrase FlaG PF03646.15 BAD84888.1 - 0.1 12.8 0.8 0.25 11.5 0.8 1.6 1 0 0 1 1 1 0 FlaG protein MazG PF03819.17 BAD84889.1 - 1.9e-14 53.6 0.0 2.2e-14 53.4 0.0 1.1 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain MazG-like PF12643.7 BAD84889.1 - 4.2e-06 26.9 0.1 5.6e-06 26.5 0.1 1.1 1 0 0 1 1 1 1 MazG-like family PRA-PH PF01503.17 BAD84889.1 - 0.00027 21.3 0.1 0.00034 21.0 0.1 1.1 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase Histone_HNS PF00816.21 BAD84889.1 - 0.11 13.3 0.1 0.15 12.9 0.1 1.2 1 0 0 1 1 1 0 H-NS histone family CbiA PF01656.23 BAD84890.1 - 8.3e-22 77.6 0.0 1e-21 77.3 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 BAD84890.1 - 2.3e-17 63.3 0.0 4.5e-09 36.1 0.0 3.0 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase Fer4_21 PF14697.6 BAD84890.1 - 2.1e-11 43.8 10.8 2.1e-11 43.8 10.8 1.6 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 BAD84890.1 - 3.7e-09 36.0 18.8 1.9e-06 27.5 6.2 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 BAD84890.1 - 2e-06 27.5 12.7 0.001 19.0 2.4 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 BAD84890.1 - 3.7e-06 27.0 11.4 0.0061 16.7 3.5 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 BAD84890.1 - 5.7e-06 27.2 4.8 0.063 14.2 1.5 2.5 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 BAD84890.1 - 6.7e-06 26.6 13.5 1.7e-05 25.3 13.5 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain AAA_31 PF13614.6 BAD84890.1 - 7.6e-06 25.9 0.0 7.1e-05 22.8 0.0 2.0 1 1 0 1 1 1 1 AAA domain Fer4_17 PF13534.6 BAD84890.1 - 1.5e-05 25.5 2.5 0.0071 16.9 0.8 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain CBP_BcsQ PF06564.12 BAD84890.1 - 6.1e-05 22.6 0.0 0.033 13.7 0.0 2.2 2 0 0 2 2 2 2 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 BAD84890.1 - 0.0001 21.8 0.0 0.23 10.9 0.0 2.4 2 1 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Fer4_9 PF13187.6 BAD84890.1 - 0.00018 21.6 12.3 0.00045 20.3 12.4 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain AAA_26 PF13500.6 BAD84890.1 - 0.0015 18.4 0.2 0.21 11.4 0.0 2.4 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.15 BAD84890.1 - 0.0016 17.7 0.0 0.0032 16.7 0.0 1.5 1 0 0 1 1 1 1 Anion-transporting ATPase Fer4_6 PF12837.7 BAD84890.1 - 0.0024 17.9 15.9 0.0062 16.6 5.9 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain GTP_EFTU PF00009.27 BAD84890.1 - 0.028 13.9 0.0 2 7.9 0.0 2.1 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain DUF4088 PF13317.6 BAD84890.1 - 0.061 12.9 0.0 0.092 12.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4088) RsgA_GTPase PF03193.16 BAD84890.1 - 0.22 11.4 0.0 2.8 7.8 0.0 2.3 2 1 0 2 2 2 0 RsgA GTPase Fer4_13 PF13370.6 BAD84890.1 - 0.68 10.5 14.1 1.2 9.8 4.2 2.5 1 1 1 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_8 PF13183.6 BAD84890.1 - 0.86 10.1 14.2 4.5e+02 1.4 14.5 2.3 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 BAD84890.1 - 0.86 10.3 12.4 1.6 9.4 4.3 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_22 PF17179.4 BAD84890.1 - 1.3 9.9 11.2 4.2 8.3 2.6 2.4 2 1 0 2 2 2 0 4Fe-4S dicluster domain CbiA PF01656.23 BAD84891.1 - 1e-19 70.9 0.0 1.6e-19 70.2 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 BAD84891.1 - 2.2e-17 63.4 0.4 1.1e-11 44.6 0.0 3.1 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase Fer4_6 PF12837.7 BAD84891.1 - 3.9e-10 39.4 13.7 3.5e-06 26.8 2.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.27 BAD84891.1 - 9.8e-10 37.8 12.6 9.9e-06 25.2 1.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 BAD84891.1 - 1.5e-08 34.6 7.7 2.3e-08 34.0 7.7 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_NifH PF00142.18 BAD84891.1 - 4.7e-07 29.5 0.0 0.0035 16.8 0.0 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Fer4_10 PF13237.6 BAD84891.1 - 2.6e-06 27.4 6.7 0.012 15.7 0.8 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain AAA_31 PF13614.6 BAD84891.1 - 3.8e-06 26.9 0.0 6.1e-06 26.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain MipZ PF09140.11 BAD84891.1 - 5.6e-06 25.8 0.0 8.4e-06 25.2 0.0 1.3 1 0 0 1 1 1 1 ATPase MipZ Fer4_9 PF13187.6 BAD84891.1 - 9.4e-06 25.7 11.3 3.7e-05 23.8 11.8 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 BAD84891.1 - 1.6e-05 25.4 13.0 6.1e-05 23.5 13.4 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 BAD84891.1 - 7.9e-05 22.5 12.5 0.017 15.2 1.7 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 BAD84891.1 - 9.7e-05 22.7 6.8 0.029 14.8 0.2 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 BAD84891.1 - 0.0003 21.1 11.7 0.016 15.6 2.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 BAD84891.1 - 0.00031 21.2 7.6 0.05 14.1 0.6 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 BAD84891.1 - 0.0004 21.2 12.1 0.047 14.6 3.3 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain CBP_BcsQ PF06564.12 BAD84891.1 - 0.006 16.1 0.2 0.029 13.8 0.3 1.8 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ ArsA_ATPase PF02374.15 BAD84891.1 - 0.015 14.5 0.3 0.015 14.5 0.3 1.7 2 0 0 2 2 2 0 Anion-transporting ATPase AAA_25 PF13481.6 BAD84891.1 - 0.034 13.7 0.0 0.078 12.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain MeaB PF03308.16 BAD84891.1 - 0.038 13.0 0.7 0.2 10.6 0.2 1.9 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB CLP1_P PF16575.5 BAD84891.1 - 0.064 13.1 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop Fer4_3 PF12798.7 BAD84891.1 - 0.3 12.1 18.6 1.1 10.4 6.1 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_22 PF17179.4 BAD84891.1 - 0.74 10.7 8.1 1.8 9.4 0.5 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Radical_SAM PF04055.21 BAD84892.1 - 3.3e-13 50.4 0.1 7.2e-13 49.3 0.1 1.5 1 0 0 1 1 1 1 Radical SAM superfamily DUF835 PF05763.12 BAD84892.1 - 0.12 12.1 0.1 0.29 10.9 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF835) Methyltransf_11 PF08241.12 BAD84893.1 - 2.2e-19 69.9 0.0 3.7e-19 69.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 BAD84893.1 - 8.6e-14 52.0 0.0 1.5e-13 51.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 BAD84893.1 - 3.5e-12 46.5 0.0 5e-12 46.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 BAD84893.1 - 2.8e-11 43.2 0.0 9.2e-11 41.5 0.0 1.7 1 1 1 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 BAD84893.1 - 3.2e-09 37.4 0.0 5.7e-09 36.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 BAD84893.1 - 1e-06 28.6 0.0 1.3e-06 28.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 BAD84893.1 - 1.3e-05 24.8 0.0 2.1e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_8 PF05148.15 BAD84893.1 - 1.7e-05 24.8 0.0 8.9e-05 22.4 0.0 1.9 1 1 1 2 2 2 1 Hypothetical methyltransferase N6_N4_Mtase PF01555.18 BAD84893.1 - 0.033 13.9 0.0 0.055 13.2 0.0 1.3 1 0 0 1 1 1 0 DNA methylase Aldedh PF00171.22 BAD84894.1 - 2.7e-123 411.9 0.0 3.2e-123 411.7 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.14 BAD84894.1 - 0.00019 20.6 0.0 0.0013 17.9 0.0 2.0 1 1 0 1 1 1 1 Acyl-CoA reductase (LuxC) Peripla_BP_2 PF01497.18 BAD84895.1 - 4.2e-38 131.3 0.0 5.8e-38 130.8 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein Oxidored_molyb PF00174.19 BAD84895.1 - 3.2e-08 33.4 0.0 1.5e-07 31.2 0.0 2.0 1 1 0 1 1 1 1 Oxidoreductase molybdopterin binding domain L51_S25_CI-B8 PF05047.16 BAD84895.1 - 0.12 12.3 0.2 3.5 7.6 0.1 2.9 3 0 0 3 3 3 0 Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain Abhydro_lipase PF04083.16 BAD84895.1 - 0.16 11.6 0.0 0.85 9.3 0.0 2.0 2 0 0 2 2 2 0 Partial alpha/beta-hydrolase lipase region FecCD PF01032.18 BAD84896.1 - 6.6e-82 275.0 31.7 7.8e-82 274.8 31.7 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 BAD84896.1 - 1.3e-09 38.0 15.1 1.9e-09 37.4 15.1 1.4 1 0 0 1 1 1 1 ABC 3 transport family MacB_PCD PF12704.7 BAD84896.1 - 0.08 13.3 0.8 0.26 11.6 0.2 2.0 1 1 1 2 2 2 0 MacB-like periplasmic core domain ABC_tran PF00005.27 BAD84897.1 - 7.4e-27 94.5 0.0 9.9e-27 94.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 BAD84897.1 - 8.8e-14 52.0 4.1 7.3e-08 32.6 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 BAD84897.1 - 3.8e-12 46.1 0.1 1.4e-06 27.9 0.0 2.1 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 BAD84897.1 - 2.5e-08 34.7 0.0 3.5e-08 34.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 BAD84897.1 - 1.1e-05 25.1 0.1 2.3e-05 24.0 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 BAD84897.1 - 0.00091 19.2 0.1 0.0014 18.5 0.1 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_15 PF13175.6 BAD84897.1 - 0.004 16.9 0.0 0.0064 16.2 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_16 PF13191.6 BAD84897.1 - 0.012 16.1 0.1 0.016 15.6 0.1 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_27 PF13514.6 BAD84897.1 - 0.012 15.3 0.0 0.019 14.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 BAD84897.1 - 0.017 15.1 0.0 0.038 14.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 BAD84897.1 - 0.021 15.1 0.1 0.084 13.1 0.0 1.9 2 1 0 2 2 2 0 AAA domain AAA_19 PF13245.6 BAD84897.1 - 0.025 14.9 0.0 0.049 14.0 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 BAD84897.1 - 0.033 13.9 0.0 0.15 11.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 BAD84897.1 - 0.033 14.6 0.0 0.075 13.5 0.0 1.6 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Rsa3 PF14615.6 BAD84897.1 - 0.035 13.7 0.0 0.073 12.7 0.0 1.5 1 0 0 1 1 1 0 Ribosome-assembly protein 3 MukB PF04310.12 BAD84897.1 - 0.073 12.9 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 MukB N-terminal Rad17 PF03215.15 BAD84897.1 - 0.11 12.4 0.0 0.17 11.8 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain ABC_ATPase PF09818.9 BAD84897.1 - 0.13 11.1 0.1 0.79 8.4 0.4 1.8 2 0 0 2 2 2 0 Predicted ATPase of the ABC class NACHT PF05729.12 BAD84897.1 - 0.18 11.7 0.2 0.51 10.2 0.1 1.7 2 0 0 2 2 2 0 NACHT domain NTPase_1 PF03266.15 BAD84897.1 - 0.19 11.6 0.1 0.9 9.4 0.0 1.8 2 0 0 2 2 2 0 NTPase Oxidored_molyb PF00174.19 BAD84898.1 - 0.012 15.3 0.1 1.8 8.2 0.0 3.1 2 1 1 3 3 3 0 Oxidoreductase molybdopterin binding domain DUF364 PF04016.12 BAD84899.1 - 1.5e-35 122.0 0.1 2.3e-35 121.3 0.1 1.2 1 0 0 1 1 1 1 Putative heavy-metal chelation DUF4213 PF13938.6 BAD84899.1 - 1e-11 44.9 0.0 2.1e-11 43.9 0.0 1.5 1 0 0 1 1 1 1 Putative heavy-metal chelation TrmO PF01980.16 BAD84900.1 - 5.1e-40 136.4 0.0 6.2e-40 136.1 0.0 1.1 1 0 0 1 1 1 1 tRNA-methyltransferase O Lactamase_B PF00753.27 BAD84901.1 - 1.5e-07 31.7 0.1 2.2e-07 31.1 0.1 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 BAD84901.1 - 3.8e-07 29.8 0.0 5.8e-07 29.2 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain DUF3147 PF11345.8 BAD84902.1 - 0.024 15.0 2.2 0.024 15.0 2.2 1.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3147) VIT1 PF01988.19 BAD84902.1 - 0.98 9.2 6.8 1.5 8.6 1.4 2.0 1 1 1 2 2 2 0 VIT family FeoB_N PF02421.18 BAD84903.1 - 1.4e-70 235.8 0.2 2.1e-70 235.2 0.2 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.14 BAD84903.1 - 1.6e-47 160.4 13.8 2.3e-33 114.8 3.1 3.1 3 0 0 3 3 3 2 Nucleoside recognition FeoB_C PF07664.12 BAD84903.1 - 5.4e-20 70.8 1.3 5.4e-20 70.8 1.3 3.3 5 0 0 5 5 4 1 Ferrous iron transport protein B C terminus MMR_HSR1 PF01926.23 BAD84903.1 - 3.2e-19 69.1 0.1 6e-19 68.2 0.1 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_Cyto PF17910.1 BAD84903.1 - 9.4e-15 54.9 1.4 1.5e-14 54.3 0.6 1.8 2 0 0 2 2 1 1 FeoB cytosolic helical domain GTP_EFTU PF00009.27 BAD84903.1 - 3.1e-07 30.1 0.1 6.7e-05 22.5 0.1 2.6 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain RsgA_GTPase PF03193.16 BAD84903.1 - 4e-06 26.8 0.2 0.0022 17.9 0.1 2.2 2 0 0 2 2 2 2 RsgA GTPase SRPRB PF09439.10 BAD84903.1 - 0.00017 21.1 0.0 0.00029 20.3 0.0 1.4 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit Arf PF00025.21 BAD84903.1 - 0.00041 19.8 0.1 0.00082 18.9 0.1 1.5 1 1 0 1 1 1 1 ADP-ribosylation factor family ATP_bind_1 PF03029.17 BAD84903.1 - 0.0015 18.4 0.0 0.016 15.0 0.1 2.0 1 1 1 2 2 2 1 Conserved hypothetical ATP binding protein ABC_tran PF00005.27 BAD84903.1 - 0.049 14.2 0.0 0.099 13.2 0.0 1.4 1 0 0 1 1 1 0 ABC transporter PduV-EutP PF10662.9 BAD84903.1 - 0.084 12.6 0.1 0.31 10.8 0.1 1.9 1 1 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_21 PF13304.6 BAD84903.1 - 0.16 11.8 0.1 0.37 10.6 0.1 1.7 1 1 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system FTHFS PF01268.19 BAD84903.1 - 0.17 10.1 0.0 0.25 9.5 0.0 1.1 1 0 0 1 1 1 0 Formate--tetrahydrofolate ligase Dynamin_N PF00350.23 BAD84903.1 - 0.23 11.5 0.0 0.8 9.7 0.0 1.8 2 0 0 2 2 2 0 Dynamin family cobW PF02492.19 BAD84903.1 - 0.33 10.5 1.1 24 4.5 0.1 2.4 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain FeoA PF04023.14 BAD84904.1 - 6.9e-21 74.3 3.1 7.5e-21 74.2 3.1 1.0 1 0 0 1 1 1 1 FeoA domain FeoA PF04023.14 BAD84905.1 - 2.2e-19 69.5 0.7 2.4e-19 69.3 0.7 1.0 1 0 0 1 1 1 1 FeoA domain SBP_bac_11 PF13531.6 BAD84906.1 - 2.5e-43 148.5 0.0 2.9e-43 148.3 0.0 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Phosphonate-bd PF12974.7 BAD84906.1 - 1.1e-08 35.0 0.0 1.4e-08 34.6 0.0 1.1 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein SBP_bac_1 PF01547.25 BAD84906.1 - 8.6e-05 22.6 0.1 0.00068 19.7 0.1 2.0 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein OpuAC PF04069.12 BAD84906.1 - 0.00051 19.7 0.0 0.00068 19.3 0.0 1.2 1 0 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system PBP_like PF12727.7 BAD84906.1 - 0.005 16.0 0.0 0.011 14.9 0.0 1.6 1 0 0 1 1 1 1 PBP superfamily domain BPD_transp_1 PF00528.22 BAD84907.1 - 1.8e-23 83.2 13.9 1.8e-23 83.2 13.9 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 BAD84908.1 - 3.1e-32 112.0 0.0 4.8e-32 111.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE PF03459.17 BAD84908.1 - 1.6e-10 41.1 0.0 7.7e-10 38.9 0.0 2.1 2 0 0 2 2 2 1 TOBE domain AAA_21 PF13304.6 BAD84908.1 - 1.7e-06 28.1 0.4 0.0097 15.7 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 BAD84908.1 - 2.7e-05 23.7 0.0 0.094 12.1 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.6 BAD84908.1 - 6.5e-05 23.1 0.0 0.0013 18.9 0.0 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit TOBE_2 PF08402.10 BAD84908.1 - 0.00032 20.8 0.0 0.00069 19.7 0.0 1.6 1 0 0 1 1 1 1 TOBE domain AAA_29 PF13555.6 BAD84908.1 - 0.00064 19.4 0.0 0.0015 18.3 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 BAD84908.1 - 0.0047 17.2 0.2 0.039 14.2 0.2 2.3 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 BAD84908.1 - 0.01 16.4 0.0 0.016 15.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.7 BAD84908.1 - 0.01 14.8 0.0 0.019 13.9 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain PhoH PF02562.16 BAD84908.1 - 0.03 13.8 0.0 1.4 8.3 0.0 2.3 2 0 0 2 2 2 0 PhoH-like protein IstB_IS21 PF01695.17 BAD84908.1 - 0.036 13.8 0.0 0.29 10.8 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_27 PF13514.6 BAD84908.1 - 0.037 13.6 0.0 0.072 12.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 BAD84908.1 - 0.05 14.0 0.0 0.11 12.9 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.6 BAD84908.1 - 0.064 13.0 0.1 0.31 10.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 BAD84908.1 - 0.068 12.6 0.0 0.12 11.7 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI T2SSE PF00437.20 BAD84908.1 - 0.1 11.6 0.0 0.2 10.7 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein ABC_ATPase PF09818.9 BAD84908.1 - 0.12 11.1 0.1 5.6 5.6 0.0 2.4 2 1 0 2 2 2 0 Predicted ATPase of the ABC class QRPTase_N PF02749.16 BAD84909.1 - 6.8e-08 32.5 0.0 1e-07 31.9 0.0 1.3 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain DASH_Dam1 PF08653.10 BAD84909.1 - 0.083 12.7 0.1 0.15 11.9 0.1 1.4 1 0 0 1 1 1 0 DASH complex subunit Dam1 QRPTase_C PF01729.19 BAD84909.1 - 0.15 11.8 0.3 0.19 11.5 0.3 1.2 1 0 0 1 1 1 0 Quinolinate phosphoribosyl transferase, C-terminal domain DUF2250 PF10007.9 BAD84910.1 - 4.2e-34 116.5 0.8 5.8e-34 116.1 0.8 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) TrmB PF01978.19 BAD84910.1 - 0.0042 16.9 0.0 0.0097 15.8 0.0 1.7 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 BAD84910.1 - 0.049 13.5 0.0 0.15 12.0 0.0 1.9 2 0 0 2 2 2 0 MarR family PEMT PF04191.13 BAD84911.1 - 3.1e-05 24.3 1.9 0.00013 22.3 1.9 1.9 1 1 0 1 1 1 1 Phospholipid methyltransferase ICMT PF04140.14 BAD84911.1 - 5.8e-05 23.4 0.1 0.0001 22.6 0.0 1.5 1 1 0 1 1 1 1 Isoprenylcysteine carboxyl methyltransferase (ICMT) family PGPGW PF09656.10 BAD84911.1 - 0.068 12.7 0.2 0.068 12.7 0.2 2.4 2 0 0 2 2 2 0 Putative transmembrane protein (PGPGW) Phage_holin_3_6 PF07332.11 BAD84911.1 - 4.2 7.4 7.7 21 5.2 2.7 2.1 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III Nitro_FeMo-Co PF02579.17 BAD84912.1 - 9.1e-16 58.0 0.0 1.1e-15 57.7 0.0 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor Nitro_FeMo-Co PF02579.17 BAD84913.1 - 7e-23 80.8 0.2 8.9e-23 80.4 0.2 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor FAM153 PF15722.5 BAD84913.1 - 0.088 13.2 0.3 0.14 12.5 0.3 1.2 1 0 0 1 1 1 0 FAM153 family KRTAP PF11759.8 BAD84913.1 - 1.5 9.5 20.3 3 8.5 20.3 1.5 1 0 0 1 1 1 0 Keratin-associated matrix Keratin_2_head PF16208.5 BAD84913.1 - 4.4 7.4 15.1 1.1 9.4 11.5 1.7 2 0 0 2 2 2 0 Keratin type II head ABC2_membrane PF01061.24 BAD84915.1 - 1e-26 93.7 23.2 1e-26 93.7 23.2 1.6 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 BAD84915.1 - 1.3e-13 50.8 29.4 1.3e-13 50.8 29.4 1.4 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 BAD84915.1 - 0.00023 21.2 8.2 0.00023 21.2 8.2 2.7 1 1 2 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 BAD84915.1 - 0.00046 19.6 24.3 0.055 12.7 21.4 2.7 1 1 1 2 2 2 2 ABC-2 family transporter protein Fumarate_red_D PF02313.17 BAD84915.1 - 0.0022 18.1 1.9 0.0022 18.1 1.9 2.3 2 1 0 2 2 2 1 Fumarate reductase subunit D ABC_tran PF00005.27 BAD84916.1 - 2.2e-28 99.5 0.0 3.7e-28 98.7 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 BAD84916.1 - 1.1e-13 51.7 0.2 2.2e-09 37.5 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 BAD84916.1 - 0.0017 18.7 0.1 0.012 15.9 0.1 2.2 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.6 BAD84916.1 - 0.0027 18.1 0.0 0.0058 17.0 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain DUF4162 PF13732.6 BAD84916.1 - 0.0029 18.3 0.1 0.014 16.1 0.0 2.2 1 1 0 2 2 2 1 Domain of unknown function (DUF4162) AAA_27 PF13514.6 BAD84916.1 - 0.0086 15.7 0.0 0.016 14.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_23 PF13476.6 BAD84916.1 - 0.0087 16.6 0.3 0.016 15.7 0.2 1.4 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 BAD84916.1 - 0.011 15.2 0.0 1.6 8.1 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 BAD84916.1 - 0.012 15.4 0.0 2.8 7.6 0.0 2.2 1 1 1 2 2 2 0 AAA ATPase domain AAA_30 PF13604.6 BAD84916.1 - 0.02 14.6 0.1 0.063 13.0 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 BAD84916.1 - 0.028 14.2 0.0 0.06 13.1 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_5 PF07728.14 BAD84916.1 - 0.036 14.1 0.9 0.27 11.2 0.9 2.2 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA PF00004.29 BAD84916.1 - 0.04 14.3 0.9 0.23 11.9 0.9 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_13 PF13166.6 BAD84916.1 - 0.055 12.1 0.0 0.71 8.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 BAD84916.1 - 0.092 13.0 0.1 0.35 11.1 0.1 1.9 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.22 BAD84916.1 - 0.1 12.2 0.2 0.18 11.4 0.2 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain TsaE PF02367.17 BAD84916.1 - 0.18 11.8 0.1 0.33 11.0 0.1 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE PQQ_2 PF13360.6 BAD84917.1 - 7.7e-14 51.8 2.4 1.4e-07 31.4 0.2 2.7 1 1 1 2 2 2 2 PQQ-like domain PQQ_3 PF13570.6 BAD84917.1 - 4.7e-11 42.8 9.2 0.01 16.3 0.0 6.2 6 1 1 7 7 7 3 PQQ-like domain PQQ PF01011.21 BAD84917.1 - 0.059 13.3 3.0 13 5.9 0.2 5.2 5 0 0 5 5 5 0 PQQ enzyme repeat Methyltransf_11 PF08241.12 BAD84918.1 - 1.3e-26 93.0 0.0 1.9e-26 92.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 BAD84918.1 - 3.7e-22 78.8 0.0 5.3e-22 78.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 BAD84918.1 - 1.9e-17 63.5 0.0 2.4e-17 63.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 BAD84918.1 - 2e-17 63.5 0.0 2.3e-17 63.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 BAD84918.1 - 2e-16 60.0 0.0 2.6e-16 59.7 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 BAD84918.1 - 4.7e-14 52.9 0.0 6.8e-14 52.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 BAD84918.1 - 0.00087 18.9 0.0 0.0012 18.5 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_3 PF01596.17 BAD84918.1 - 0.0015 17.8 0.0 0.0024 17.1 0.0 1.3 1 0 0 1 1 1 1 O-methyltransferase UPF0020 PF01170.18 BAD84918.1 - 0.0023 17.6 0.0 0.0058 16.3 0.0 1.6 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 NodS PF05401.11 BAD84918.1 - 0.013 15.2 0.0 0.017 14.7 0.0 1.1 1 0 0 1 1 1 0 Nodulation protein S (NodS) Methyltransf_18 PF12847.7 BAD84918.1 - 0.14 12.1 0.1 13 5.7 0.0 2.6 1 1 2 3 3 3 0 Methyltransferase domain UPF0051 PF01458.17 BAD84919.1 - 2.5e-55 187.5 0.0 3.7e-55 187.0 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) ABC_tran PF00005.27 BAD84920.1 - 6.1e-23 81.8 0.0 8.3e-23 81.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 BAD84920.1 - 1.2e-10 41.8 2.6 4.3e-06 26.7 0.3 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 BAD84920.1 - 2e-05 24.2 0.1 0.01 15.3 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 BAD84920.1 - 0.00025 20.7 0.0 0.00048 19.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_27 PF13514.6 BAD84920.1 - 0.0021 17.7 0.0 0.0047 16.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.6 BAD84920.1 - 0.0024 17.5 0.0 0.013 15.1 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 BAD84920.1 - 0.0032 17.7 0.1 0.012 15.9 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 BAD84920.1 - 0.0049 17.4 0.0 0.0098 16.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 BAD84920.1 - 0.0057 16.6 0.0 0.0096 15.8 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase ATPase_2 PF01637.18 BAD84920.1 - 0.03 14.2 0.0 0.076 12.9 0.0 1.6 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_13 PF13166.6 BAD84920.1 - 0.03 13.0 0.0 0.12 10.9 0.0 1.7 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 BAD84920.1 - 0.032 14.0 0.1 0.82 9.4 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein ADSL_C PF10397.9 BAD84920.1 - 0.042 14.4 0.0 0.077 13.6 0.0 1.5 1 0 0 1 1 1 0 Adenylosuccinate lyase C-terminus AAA_24 PF13479.6 BAD84920.1 - 0.068 12.9 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 BAD84920.1 - 0.13 12.7 0.2 0.47 10.9 0.2 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) MutS_V PF00488.21 BAD84920.1 - 0.13 12.2 0.4 13 5.7 0.0 2.2 2 0 0 2 2 2 0 MutS domain V AAA_28 PF13521.6 BAD84920.1 - 0.16 12.2 0.1 0.35 11.1 0.0 1.6 2 0 0 2 2 1 0 AAA domain NACHT PF05729.12 BAD84920.1 - 0.16 11.8 1.5 0.66 9.9 0.0 2.1 2 1 0 2 2 2 0 NACHT domain RNA12 PF10443.9 BAD84920.1 - 0.19 10.4 0.0 0.25 10.0 0.0 1.1 1 0 0 1 1 1 0 RNA12 protein AAA_33 PF13671.6 BAD84920.1 - 0.22 11.7 0.0 0.39 10.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain Nitro_FeMo-Co PF02579.17 BAD84921.1 - 9.9e-23 80.3 0.0 1.4e-22 79.9 0.0 1.2 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor DUF104 PF01954.16 BAD84922.1 - 1.7e-15 57.2 7.5 2e-15 57.0 7.5 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF104 Smoothelin PF12510.8 BAD84922.1 - 0.0071 16.4 0.7 0.015 15.3 0.7 1.5 1 0 0 1 1 1 1 Smoothelin cytoskeleton protein PIN PF01850.21 BAD84923.1 - 1.2e-26 93.6 0.2 1.4e-26 93.3 0.2 1.1 1 0 0 1 1 1 1 PIN domain Lactamase_B PF00753.27 BAD84924.1 - 2e-16 60.6 4.3 3.9e-16 59.7 4.3 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 BAD84924.1 - 4.4e-14 52.5 0.0 6.8e-14 51.8 0.0 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 BAD84924.1 - 0.0071 15.8 0.0 0.01 15.3 0.0 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 BAD84924.1 - 0.012 15.6 0.0 0.019 14.8 0.0 1.3 1 0 0 1 1 1 0 Beta-lactamase superfamily domain adh_short_C2 PF13561.6 BAD84925.1 - 1.2e-49 168.9 0.0 1.8e-49 168.4 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 BAD84925.1 - 1.3e-35 122.7 0.0 1.6e-35 122.4 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 BAD84925.1 - 9.5e-08 32.2 0.0 1.8e-07 31.3 0.0 1.4 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.6 BAD84925.1 - 2.5e-06 27.5 0.0 3.4e-06 27.1 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding 3HCDH_N PF02737.18 BAD84925.1 - 0.00044 20.2 0.1 0.00083 19.3 0.1 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Methyltransf_11 PF08241.12 BAD84925.1 - 0.004 17.8 0.0 0.052 14.2 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 BAD84925.1 - 0.0084 16.8 0.0 0.084 13.6 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain UDPG_MGDP_dh_N PF03721.14 BAD84925.1 - 0.011 15.4 0.0 0.017 14.7 0.0 1.2 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ADH_zinc_N PF00107.26 BAD84925.1 - 0.024 14.6 0.0 0.047 13.7 0.0 1.5 1 0 0 1 1 1 0 Zinc-binding dehydrogenase CoA_binding_2 PF13380.6 BAD84925.1 - 0.041 14.4 0.0 0.16 12.4 0.0 1.8 2 0 0 2 2 2 0 CoA binding domain DUF1776 PF08643.10 BAD84925.1 - 0.042 13.2 0.0 0.068 12.5 0.0 1.3 1 0 0 1 1 1 0 Fungal family of unknown function (DUF1776) Sacchrp_dh_NADP PF03435.18 BAD84925.1 - 0.092 13.0 0.1 0.17 12.1 0.1 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain ApbA PF02558.16 BAD84925.1 - 0.1 12.3 0.0 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Epimerase PF01370.21 BAD84925.1 - 0.19 11.2 0.0 0.83 9.1 0.0 1.8 2 0 0 2 2 2 0 NAD dependent epimerase/dehydratase family DUF835 PF05763.12 BAD84926.1 - 6.5e-33 113.4 0.2 8.2e-33 113.0 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF835) AAA_22 PF13401.6 BAD84926.1 - 0.16 12.3 0.0 0.2 11.9 0.0 1.1 1 0 0 1 1 1 0 AAA domain DUF3112 PF11309.8 BAD84927.1 - 0.055 12.9 1.0 0.069 12.6 1.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3112) DUF3810 PF12725.7 BAD84927.1 - 0.23 10.8 1.3 0.32 10.3 1.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3810) Fer4_7 PF12838.7 BAD84928.1 - 4.5e-09 36.8 10.6 6.1e-09 36.3 10.6 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 BAD84928.1 - 1.5e-08 34.4 13.3 1.8e-06 27.8 4.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.27 BAD84928.1 - 3.2e-07 29.9 14.8 3.5e-07 29.7 3.3 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.6 BAD84928.1 - 5.2e-06 26.5 10.7 2.6e-05 24.3 11.4 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 BAD84928.1 - 2.9e-05 24.9 12.5 0.00078 20.3 12.5 2.2 1 1 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 BAD84928.1 - 0.00012 22.0 3.7 0.00012 22.0 3.7 2.9 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_9 PF13187.6 BAD84928.1 - 0.00021 21.4 11.8 0.0013 18.9 12.3 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 BAD84928.1 - 0.0044 17.4 10.6 0.01 16.3 1.7 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_21 PF14697.6 BAD84928.1 - 0.0073 16.4 10.6 0.026 14.7 10.8 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.7 BAD84928.1 - 0.015 16.2 13.3 0.05 14.6 5.7 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_8 PF13183.6 BAD84928.1 - 0.047 14.2 9.2 0.74 10.3 2.7 2.2 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 BAD84928.1 - 0.067 13.8 11.4 3.5 8.2 12.3 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain zf-CCHC_4 PF14392.6 BAD84928.1 - 0.23 11.2 0.6 0.23 11.2 0.6 2.7 2 1 0 2 2 2 0 Zinc knuckle ABM PF03992.16 BAD84930.1 - 0.00027 21.0 0.1 0.00037 20.5 0.1 1.2 1 0 0 1 1 1 1 Antibiotic biosynthesis monooxygenase HTH_50 PF18024.1 BAD84930.1 - 0.11 12.1 0.0 0.3 10.7 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain DUF998 PF06197.13 BAD84931.1 - 2e-28 99.3 22.4 2.2e-28 99.1 22.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF998) DUF63 PF01889.17 BAD84932.1 - 6.9e-76 256.0 16.3 7.8e-76 255.8 16.3 1.0 1 0 0 1 1 1 1 Membrane protein of unknown function DUF63 CbiQ PF02361.16 BAD84934.1 - 3e-28 98.9 13.7 5.4e-28 98.1 13.7 1.4 1 0 0 1 1 1 1 Cobalt transport protein ABC_tran PF00005.27 BAD84935.1 - 8.8e-32 110.5 0.0 1.2e-31 110.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 BAD84935.1 - 1.3e-12 48.2 0.1 1.3e-06 28.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 BAD84935.1 - 5.8e-09 35.7 0.0 2.3e-07 30.5 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 BAD84935.1 - 0.00022 21.8 0.0 0.00032 21.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 BAD84935.1 - 0.00026 21.4 0.1 0.00055 20.4 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.6 BAD84935.1 - 0.00033 20.5 0.0 0.0029 17.4 0.0 1.9 1 1 0 2 2 2 1 AAA ATPase domain TniB PF05621.11 BAD84935.1 - 0.00034 20.1 0.0 0.37 10.2 0.0 2.2 2 0 0 2 2 2 2 Bacterial TniB protein AAA_22 PF13401.6 BAD84935.1 - 0.00061 20.1 0.0 0.0045 17.3 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_24 PF13479.6 BAD84935.1 - 0.0019 18.0 0.0 0.015 15.0 0.0 2.0 2 0 0 2 2 2 1 AAA domain Mg_chelatase PF01078.21 BAD84935.1 - 0.0021 17.5 0.0 0.0037 16.7 0.0 1.3 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_29 PF13555.6 BAD84935.1 - 0.0024 17.6 0.0 0.0048 16.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain NACHT PF05729.12 BAD84935.1 - 0.0049 16.8 0.1 0.012 15.6 0.0 1.7 2 0 0 2 2 2 1 NACHT domain AAA PF00004.29 BAD84935.1 - 0.0064 16.9 0.0 0.015 15.7 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) SRP54 PF00448.22 BAD84935.1 - 0.007 16.0 0.0 0.011 15.4 0.0 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain NB-ARC PF00931.22 BAD84935.1 - 0.0073 15.5 0.0 0.013 14.7 0.0 1.4 1 0 0 1 1 1 1 NB-ARC domain AAA_33 PF13671.6 BAD84935.1 - 0.0073 16.5 0.0 0.014 15.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.6 BAD84935.1 - 0.0084 16.1 0.0 0.085 12.9 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_5 PF07728.14 BAD84935.1 - 0.0087 16.1 0.0 0.016 15.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) IstB_IS21 PF01695.17 BAD84935.1 - 0.0097 15.7 0.1 0.15 11.8 0.0 2.1 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_18 PF13238.6 BAD84935.1 - 0.011 16.2 0.5 0.08 13.5 0.1 2.1 2 1 0 2 2 2 0 AAA domain AAA_30 PF13604.6 BAD84935.1 - 0.013 15.3 0.0 0.015 15.0 0.0 1.4 1 1 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 BAD84935.1 - 0.014 15.3 0.0 0.022 14.7 0.0 1.5 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea NTPase_1 PF03266.15 BAD84935.1 - 0.026 14.4 0.0 0.061 13.2 0.0 1.6 1 0 0 1 1 1 0 NTPase SbcCD_C PF13558.6 BAD84935.1 - 0.027 14.7 0.0 0.91 9.8 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit RsgA_GTPase PF03193.16 BAD84935.1 - 0.039 13.9 0.0 0.062 13.2 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase TsaE PF02367.17 BAD84935.1 - 0.065 13.2 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Zeta_toxin PF06414.12 BAD84935.1 - 0.087 12.1 0.0 0.16 11.2 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_28 PF13521.6 BAD84935.1 - 0.091 13.0 0.1 0.29 11.4 0.1 1.7 1 1 1 2 2 2 0 AAA domain DLIC PF05783.11 BAD84935.1 - 0.1 11.4 0.0 0.14 11.0 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) AAA_13 PF13166.6 BAD84935.1 - 0.12 11.1 0.0 0.2 10.3 0.0 1.4 2 0 0 2 2 2 0 AAA domain PhoH PF02562.16 BAD84935.1 - 0.12 11.8 0.1 0.47 9.9 0.0 1.9 2 0 0 2 2 2 0 PhoH-like protein AAA_25 PF13481.6 BAD84935.1 - 0.15 11.6 0.1 0.61 9.6 0.0 2.0 2 1 0 2 2 2 0 AAA domain PduV-EutP PF10662.9 BAD84935.1 - 0.23 11.2 0.0 0.39 10.4 0.0 1.3 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation HTH_11 PF08279.12 BAD84936.1 - 8.4e-13 48.1 0.0 1.7e-12 47.1 0.0 1.5 1 0 0 1 1 1 1 HTH domain BPL_LplA_LipB PF03099.19 BAD84936.1 - 3.6e-08 33.4 0.0 6e-08 32.7 0.0 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family HTH_24 PF13412.6 BAD84936.1 - 2.6e-05 23.7 0.0 4.6e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 BAD84936.1 - 0.00032 20.7 0.0 0.00068 19.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_10 PF04967.12 BAD84936.1 - 0.00092 19.0 0.0 0.0081 16.0 0.0 2.2 2 0 0 2 2 2 1 HTH DNA binding domain HTH_39 PF14090.6 BAD84936.1 - 0.0059 16.3 0.0 0.011 15.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AsnC-type PF13404.6 BAD84936.1 - 0.0062 16.3 0.1 0.012 15.4 0.1 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.7 BAD84936.1 - 0.012 15.4 0.0 0.03 14.2 0.0 1.6 1 0 0 1 1 1 0 MarR family HTH_Crp_2 PF13545.6 BAD84936.1 - 0.014 15.4 0.1 0.077 13.0 0.0 2.2 3 0 0 3 3 3 0 Crp-like helix-turn-helix domain HTH_5 PF01022.20 BAD84936.1 - 0.018 14.9 0.0 0.035 14.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_22 PF13309.6 BAD84936.1 - 0.027 14.6 0.0 1.1 9.4 0.0 2.4 2 0 0 2 2 2 0 HTH domain Rrf2 PF02082.20 BAD84936.1 - 0.039 14.3 0.2 0.12 12.7 0.0 1.9 2 0 0 2 2 2 0 Transcriptional regulator Fe_dep_repress PF01325.19 BAD84936.1 - 0.042 14.1 0.0 0.14 12.4 0.0 1.9 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_1 PF00126.27 BAD84936.1 - 0.057 13.4 0.2 0.95 9.5 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family DUF2067 PF09840.9 BAD84936.1 - 0.068 12.7 0.1 0.15 11.7 0.0 1.5 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2067) BioY PF02632.14 BAD84937.1 - 3.4e-38 130.8 15.6 4.4e-38 130.4 15.6 1.2 1 0 0 1 1 1 1 BioY family ECF_trnsprt PF12822.7 BAD84937.1 - 2.3e-06 27.8 18.2 3.1e-06 27.4 18.2 1.1 1 0 0 1 1 1 1 ECF transporter, substrate-specific component 7TM-7TMR_HD PF07698.11 BAD84937.1 - 0.023 14.4 11.6 0.044 13.5 11.6 1.4 1 1 0 1 1 1 0 7TM receptor with intracellular HD hydrolase NTP_transf_3 PF12804.7 BAD84938.1 - 0.0011 19.4 0.0 0.0014 19.0 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain DUF1870 PF08965.10 BAD84938.1 - 0.063 13.3 0.0 0.43 10.6 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1870) DUF3096 PF11295.8 BAD84938.1 - 0.82 9.4 3.3 0.25 11.0 0.6 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3096) DUF1931 PF09123.11 BAD84939.1 - 2.5e-46 157.2 1.7 2.8e-46 157.0 1.7 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1931) DNTTIP1_dimer PF18192.1 BAD84939.1 - 0.32 11.4 1.7 1.4 9.3 0.8 2.4 2 1 1 3 3 3 0 DNTTIP1 dimerisation domain Wzt_C PF14524.6 BAD84940.1 - 0.00068 19.7 0.1 0.0011 19.0 0.1 1.3 1 0 0 1 1 1 1 Wzt C-terminal domain Peptidase_S9 PF00326.21 BAD84941.1 - 5.6e-60 202.4 0.0 8.1e-60 201.9 0.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family Peptidase_S15 PF02129.18 BAD84941.1 - 1e-09 38.4 0.0 3.4e-07 30.1 0.1 2.2 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) DPPIV_N PF00930.21 BAD84941.1 - 1.3e-08 34.0 0.0 0.036 12.8 0.0 3.8 3 1 1 4 4 4 3 Dipeptidyl peptidase IV (DPP IV) N-terminal region AXE1 PF05448.12 BAD84941.1 - 2.1e-08 33.2 0.1 9.6e-07 27.8 0.1 2.2 1 1 0 1 1 1 1 Acetyl xylan esterase (AXE1) PD40 PF07676.12 BAD84941.1 - 4.6e-07 29.6 0.0 3.4e-06 26.9 0.0 2.6 2 0 0 2 2 2 1 WD40-like Beta Propeller Repeat DUF5050 PF16472.5 BAD84941.1 - 2.1e-05 24.0 0.0 0.00076 18.8 0.0 2.7 2 1 0 2 2 2 1 Domain of unknown function (DUF5050) Abhydrolase_1 PF00561.20 BAD84941.1 - 0.00031 20.5 0.1 0.00058 19.6 0.1 1.5 1 1 0 1 1 1 1 alpha/beta hydrolase fold DUF2920 PF11144.8 BAD84941.1 - 0.00042 19.6 0.0 0.015 14.5 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF2920) Hydrolase_4 PF12146.8 BAD84941.1 - 0.00098 18.5 0.3 1.5 8.0 0.4 2.3 2 0 0 2 2 2 2 Serine aminopeptidase, S33 DLH PF01738.18 BAD84941.1 - 0.0034 17.0 0.0 0.013 15.0 0.0 1.8 1 1 0 1 1 1 1 Dienelactone hydrolase family Aft1_HRR PF11787.8 BAD84942.1 - 0.22 12.7 0.2 0.61 11.3 0.0 1.8 2 0 0 2 2 2 0 Aft1 HRR domain CbtB PF09489.10 BAD84942.1 - 2.1 8.5 5.8 8.5 6.6 0.7 2.4 2 0 0 2 2 2 0 Probable cobalt transporter subunit (CbtB) Helicase_RecD PF05127.14 BAD84943.1 - 2e-55 187.3 0.0 3.7e-55 186.5 0.0 1.5 1 0 0 1 1 1 1 Helicase GNAT_acetyltr_2 PF13718.6 BAD84943.1 - 3.6e-47 160.7 0.0 7.3e-33 113.9 0.0 2.4 1 1 1 2 2 2 2 GNAT acetyltransferase 2 DUF1726 PF08351.11 BAD84943.1 - 2e-33 114.2 0.0 7.9e-33 112.3 0.0 2.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1726) tRNA_bind_2 PF13725.6 BAD84943.1 - 9.1e-05 22.3 1.0 0.00039 20.2 0.1 2.4 2 1 0 2 2 2 1 Possible tRNA binding domain Acetyltransf_1 PF00583.25 BAD84943.1 - 0.0019 18.4 0.1 0.0055 16.9 0.1 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family AAA_22 PF13401.6 BAD84943.1 - 0.0071 16.6 0.0 0.35 11.1 0.0 3.0 3 0 0 3 3 3 1 AAA domain NYN PF01936.18 BAD84944.1 - 2e-18 67.3 0.0 2.4e-18 67.0 0.0 1.1 1 0 0 1 1 1 1 NYN domain DUF374 PF04028.13 BAD84944.1 - 0.00085 18.8 0.0 0.032 13.8 0.1 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF374) HAD PF12710.7 BAD84944.1 - 0.062 13.7 0.0 0.074 13.4 0.0 1.2 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase NYN PF01936.18 BAD84945.1 - 3.6e-21 76.2 0.1 4.5e-21 75.9 0.1 1.1 1 0 0 1 1 1 1 NYN domain DUF460 PF04312.13 BAD84945.1 - 0.0015 18.3 1.4 0.046 13.4 0.2 2.3 1 1 1 2 2 2 2 Protein of unknown function (DUF460) SBP_bac_6 PF13343.6 BAD84946.1 - 1.9e-25 89.7 3.8 2.5e-25 89.3 3.8 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 BAD84946.1 - 2.8e-25 89.4 0.0 4.4e-25 88.8 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 BAD84946.1 - 1.1e-23 84.5 2.1 1.5e-23 84.0 2.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 BAD84946.1 - 6.2e-18 65.8 7.7 9.4e-18 65.2 7.7 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Amidohydro_1 PF01979.20 BAD84947.1 - 1.4e-64 218.6 0.0 1.6e-64 218.4 0.0 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 BAD84947.1 - 4.9e-17 62.6 0.1 3.9e-13 49.7 0.0 2.6 2 1 1 3 3 3 3 Amidohydrolase family DAO PF01266.24 BAD84947.1 - 0.0055 16.3 0.1 0.19 11.3 0.0 2.2 1 1 0 2 2 2 1 FAD dependent oxidoreductase A_deaminase PF00962.22 BAD84947.1 - 0.031 13.6 0.0 0.052 12.9 0.0 1.3 1 0 0 1 1 1 0 Adenosine/AMP deaminase DUF627 PF04781.12 BAD84947.1 - 0.081 12.9 0.0 0.17 11.9 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF627) TPD52 PF04201.15 BAD84947.1 - 0.11 12.1 0.1 0.18 11.4 0.1 1.2 1 0 0 1 1 1 0 Tumour protein D52 family tRNA-synt_2 PF00152.20 BAD84948.1 - 1.7e-87 293.4 0.0 2.1e-87 293.1 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 BAD84948.1 - 2.8e-15 56.1 0.8 5.4e-15 55.2 0.8 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain TGT PF01702.18 BAD84949.1 - 1.6e-80 271.0 0.0 2.1e-80 270.5 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase TGT_C1 PF14809.6 BAD84949.1 - 4.3e-46 155.1 2.7 4.3e-46 155.1 2.7 1.9 2 0 0 2 2 2 1 C1 domain of tRNA-guanine transglycosylase dimerisation TGT_C2 PF14810.6 BAD84949.1 - 1.2e-23 83.0 0.1 7.3e-23 80.5 0.0 2.4 2 0 0 2 2 2 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.20 BAD84949.1 - 5.8e-17 61.4 0.1 2.1e-16 59.6 0.1 2.1 2 0 0 2 2 2 1 PUA domain PUA_3 PF17785.1 BAD84949.1 - 0.00044 20.0 0.1 0.021 14.6 0.0 3.1 3 0 0 3 3 3 1 PUA-like domain UPF0113 PF03657.13 BAD84949.1 - 0.0014 18.9 0.0 0.02 15.2 0.0 2.4 2 0 0 2 2 2 1 UPF0113 PUA domain PHO4 PF01384.20 BAD84950.1 - 1.6e-53 181.9 28.7 1.2e-52 179.0 28.5 2.1 1 1 0 1 1 1 1 Phosphate transporter family SBF PF01758.16 BAD84950.1 - 0.00069 19.3 7.5 0.001 18.8 6.3 1.9 2 0 0 2 2 2 1 Sodium Bile acid symporter family Glycos_transf_2 PF00535.26 BAD84951.1 - 1.6e-35 122.4 0.0 2.4e-35 121.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 BAD84951.1 - 2.5e-32 112.6 0.0 3.3e-32 112.2 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 BAD84951.1 - 1e-15 58.2 1.0 1.6e-15 57.6 1.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 BAD84951.1 - 2.4e-13 49.9 0.0 3.5e-13 49.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.9 BAD84951.1 - 6.5e-08 32.4 0.0 1.1e-07 31.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Chitin_synth_2 PF03142.15 BAD84951.1 - 0.00056 18.7 0.1 0.15 10.6 0.1 2.9 2 1 1 3 3 3 2 Chitin synthase NifU PF01106.17 BAD84952.1 - 0.16 12.1 0.1 0.29 11.3 0.1 1.5 1 1 0 1 1 1 0 NifU-like domain DEAD_assoc PF08494.11 BAD84953.1 - 6.5e-54 182.6 0.2 1.2e-53 181.8 0.2 1.4 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.29 BAD84953.1 - 2.3e-27 95.9 0.0 8.5e-27 94.0 0.0 1.9 2 0 0 2 2 2 1 DEAD/DEAH box helicase LAGLIDADG_3 PF14528.6 BAD84953.1 - 2e-20 72.9 0.8 3.5e-13 49.6 0.3 3.4 2 0 0 2 2 2 2 LAGLIDADG-like domain ResIII PF04851.15 BAD84953.1 - 1.8e-11 44.4 0.0 3.9e-11 43.3 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Intein_splicing PF14890.6 BAD84953.1 - 3.4e-11 43.2 0.0 1.2e-10 41.4 0.0 1.9 1 0 0 1 1 1 1 Intein splicing domain Helicase_C PF00271.31 BAD84953.1 - 8.4e-11 42.2 0.2 0.00016 22.0 0.0 3.0 2 0 0 2 2 2 2 Helicase conserved C-terminal domain T2SSE PF00437.20 BAD84953.1 - 0.082 12.0 0.1 0.65 9.0 0.0 2.2 2 0 0 2 2 2 0 Type II/IV secretion system protein ANTAR PF03861.14 BAD84953.1 - 0.097 12.5 1.0 0.55 10.1 0.1 2.4 2 0 0 2 2 2 0 ANTAR domain SNF2_N PF00176.23 BAD84953.1 - 0.15 10.8 0.0 0.28 9.9 0.0 1.4 1 0 0 1 1 1 0 SNF2 family N-terminal domain Gp_dh_C PF02800.20 BAD84954.1 - 9.1e-32 109.8 0.1 1.3e-31 109.3 0.1 1.2 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.20 BAD84954.1 - 2.4e-14 53.5 0.4 1.7e-13 50.8 0.1 2.1 1 1 1 2 2 2 1 Dihydrodipicolinate reductase, N-terminus Gp_dh_N PF00044.24 BAD84954.1 - 6.4e-06 26.4 2.0 2e-05 24.8 0.0 2.7 4 0 0 4 4 4 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 BAD84954.1 - 0.0014 18.0 0.1 0.024 14.0 0.1 2.3 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 BAD84954.1 - 0.0023 18.7 0.0 0.023 15.5 0.0 2.4 1 1 1 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_3 PF03447.16 BAD84954.1 - 0.0087 16.7 0.0 1 10.0 0.0 2.9 2 1 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 BAD84954.1 - 0.067 13.4 0.0 0.23 11.7 0.0 2.0 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain DUF167 PF02594.16 BAD84957.1 - 2.2e-25 88.6 0.2 2.7e-25 88.3 0.2 1.1 1 0 0 1 1 1 1 Uncharacterised ACR, YggU family COG1872 DUF402 PF04167.13 BAD84958.1 - 4.2e-13 49.3 1.6 6.9e-13 48.6 1.6 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF402) PadR PF03551.14 BAD84959.1 - 1.7e-16 59.9 1.0 1.7e-16 59.9 1.0 1.8 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family RTP PF02334.16 BAD84959.1 - 6.1e-06 26.9 0.4 1.4e-05 25.7 0.2 1.8 1 1 1 2 2 2 1 Replication terminator protein HTH_27 PF13463.6 BAD84959.1 - 0.0059 17.1 5.3 0.07 13.6 0.1 2.9 2 1 1 3 3 3 1 Winged helix DNA-binding domain HTH_34 PF13601.6 BAD84959.1 - 0.015 15.5 0.2 0.04 14.1 0.0 1.8 2 1 0 2 2 2 0 Winged helix DNA-binding domain HTH_45 PF14947.6 BAD84959.1 - 0.015 15.2 2.2 0.021 14.8 0.1 2.2 3 0 0 3 3 3 0 Winged helix-turn-helix Phage_int_SAM_1 PF02899.17 BAD84959.1 - 0.017 15.4 0.8 0.36 11.2 0.1 2.7 1 1 2 3 3 3 0 Phage integrase, N-terminal SAM-like domain DUF2972 PF11186.8 BAD84959.1 - 0.021 14.8 2.1 0.026 14.4 1.8 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2972) TRIC PF05197.13 BAD84959.1 - 0.025 14.1 0.0 0.039 13.5 0.0 1.3 1 0 0 1 1 1 0 TRIC channel AAA_assoc_C PF09821.9 BAD84959.1 - 0.029 14.9 0.6 0.14 12.6 0.2 2.2 2 1 0 2 2 2 0 C-terminal AAA-associated domain RQC PF09382.10 BAD84959.1 - 0.034 13.9 0.2 0.21 11.4 0.0 2.1 2 0 0 2 2 2 0 RQC domain HxlR PF01638.17 BAD84959.1 - 0.041 13.7 0.4 0.16 11.9 0.1 2.0 1 1 1 2 2 2 0 HxlR-like helix-turn-helix HTH_40 PF14493.6 BAD84959.1 - 0.046 14.2 0.4 0.12 12.9 0.4 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain Retrotrans_gag PF03732.17 BAD84959.1 - 0.098 12.9 0.2 0.19 12.0 0.1 1.5 1 1 0 1 1 1 0 Retrotransposon gag protein TrmB PF01978.19 BAD84959.1 - 0.8 9.6 4.1 1.3 9.0 1.1 2.9 2 1 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB Spc7 PF08317.11 BAD84960.1 - 0.041 12.8 0.7 0.071 12.0 0.7 1.3 1 0 0 1 1 1 0 Spc7 kinetochore protein Laminin_II PF06009.12 BAD84960.1 - 0.18 11.8 2.7 1.3 9.1 2.1 2.5 1 1 2 3 3 3 0 Laminin Domain II MMPL PF03176.15 BAD84961.1 - 2.4e-69 233.8 4.0 6.5e-36 123.9 0.3 2.2 2 0 0 2 2 2 2 MMPL family ACR_tran PF00873.19 BAD84961.1 - 0.00022 19.1 2.3 0.0011 16.7 0.5 2.2 2 0 0 2 2 2 2 AcrB/AcrD/AcrF family 5_nucleotid_C PF02872.18 BAD84961.1 - 0.12 12.6 0.0 0.27 11.5 0.0 1.5 1 0 0 1 1 1 0 5'-nucleotidase, C-terminal domain GNVR PF13807.6 BAD84961.1 - 0.12 12.3 0.1 2.3 8.2 0.0 2.9 2 0 0 2 2 2 0 G-rich domain on putative tyrosine kinase AAA_15 PF13175.6 BAD84962.1 - 1.6e-40 140.0 30.7 1.6e-40 140.0 30.7 2.2 2 0 0 2 2 2 1 AAA ATPase domain AAA_21 PF13304.6 BAD84962.1 - 1.5e-14 54.5 18.1 4.7e-13 49.6 12.5 3.9 2 1 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system DUF2813 PF11398.8 BAD84962.1 - 1.5e-07 31.0 10.3 1.5e-07 31.0 10.3 2.9 2 1 0 2 2 2 1 Protein of unknown function (DUF2813) SMC_N PF02463.19 BAD84962.1 - 2.3e-06 27.2 7.4 9.6e-05 21.9 7.4 3.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 BAD84962.1 - 4.1e-06 27.4 24.0 4.1e-06 27.4 24.0 2.6 2 1 0 2 2 2 1 AAA domain AAA_29 PF13555.6 BAD84962.1 - 0.01 15.5 0.0 0.024 14.4 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_27 PF13514.6 BAD84962.1 - 0.019 14.5 0.4 0.068 12.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain Ocnus PF05005.15 BAD84962.1 - 0.044 13.9 0.1 0.37 11.0 0.0 2.4 2 1 0 2 2 2 0 Janus/Ocnus family (Ocnus) INTS5_N PF14837.6 BAD84962.1 - 0.25 10.9 2.4 0.69 9.5 0.3 2.2 2 0 0 2 2 2 0 Integrator complex subunit 5 N-terminus Mem_trans PF03547.18 BAD84963.1 - 1.2e-06 27.2 20.0 0.00083 17.9 7.5 2.1 1 1 1 2 2 2 2 Membrane transport protein DUF5438 PF17506.2 BAD84963.1 - 0.075 13.4 0.4 0.31 11.4 0.1 2.2 2 0 0 2 2 2 0 Family of unknown function (DUF5438) UPF0242 PF06785.11 BAD84963.1 - 0.28 11.2 0.3 0.56 10.3 0.3 1.5 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus Peptidase_M42 PF05343.14 BAD84964.1 - 1.1e-71 241.3 0.0 1.3e-71 241.0 0.0 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M28 PF04389.17 BAD84964.1 - 0.0015 18.3 0.0 0.22 11.2 0.0 2.2 2 0 0 2 2 2 2 Peptidase family M28 Peptidase_M20 PF01546.28 BAD84964.1 - 0.0031 17.2 0.1 0.0056 16.4 0.1 1.5 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 AAA_14 PF13173.6 BAD84965.1 - 1.6e-05 24.9 0.0 3.2e-05 24.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 BAD84965.1 - 0.0031 17.8 0.1 0.28 11.5 0.0 2.6 1 1 1 2 2 2 1 AAA domain TniB PF05621.11 BAD84965.1 - 0.083 12.3 0.1 10 5.5 0.0 2.3 1 1 1 2 2 2 0 Bacterial TniB protein Phage_integrase PF00589.22 BAD84966.1 - 5.5e-50 169.5 0.0 1.1e-49 168.5 0.0 1.5 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.17 BAD84966.1 - 3.1e-10 40.2 3.6 6e-10 39.3 0.2 2.8 3 1 1 4 4 4 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 BAD84966.1 - 4.5e-09 36.7 0.2 2.8e-08 34.1 0.1 2.3 2 1 1 3 3 3 1 Phage integrase, N-terminal SAM-like domain Integrase_1 PF12835.7 BAD84966.1 - 0.0012 19.0 0.0 0.0025 17.9 0.0 1.6 1 0 0 1 1 1 1 Integrase Phage_integr_3 PF16795.5 BAD84966.1 - 0.0035 17.3 0.8 1.1 9.1 0.1 2.3 2 0 0 2 2 2 2 Archaeal phage integrase NTS_2 PF15448.6 BAD84966.1 - 0.15 12.5 0.2 0.53 10.7 0.2 1.9 1 0 0 1 1 1 0 N-terminal segments of P. falciparum erythrocyte membrane protein Toprim PF01751.22 BAD84967.1 - 6.5e-09 35.9 1.5 4.6e-08 33.2 0.2 2.5 2 0 0 2 2 2 1 Toprim domain YabA PF06156.13 BAD84967.1 - 0.0024 18.5 3.7 0.0034 18.0 1.7 2.1 1 1 1 2 2 2 1 Initiation control protein YabA COG6 PF06419.11 BAD84967.1 - 0.0034 15.7 0.8 0.0063 14.8 0.8 1.3 1 0 0 1 1 1 1 Conserved oligomeric complex COG6 ZapB PF06005.12 BAD84967.1 - 0.0037 17.7 3.7 0.0037 17.7 3.7 2.3 2 0 0 2 2 2 1 Cell division protein ZapB Occludin_ELL PF07303.13 BAD84967.1 - 0.0046 17.7 3.2 0.0093 16.7 3.2 1.4 1 0 0 1 1 1 1 Occludin homology domain Mod_r PF07200.13 BAD84967.1 - 0.0094 16.1 3.7 0.02 15.0 3.7 1.6 1 0 0 1 1 1 1 Modifier of rudimentary (Mod(r)) protein YkyA PF10368.9 BAD84967.1 - 0.01 15.5 5.4 0.018 14.7 5.4 1.4 1 0 0 1 1 1 0 Putative cell-wall binding lipoprotein JIP_LZII PF16471.5 BAD84967.1 - 0.013 15.7 2.0 0.085 13.0 1.0 2.6 1 1 1 2 2 2 0 JNK-interacting protein leucine zipper II RmuC PF02646.16 BAD84967.1 - 0.013 14.6 0.5 0.047 12.8 0.3 1.8 1 1 1 2 2 2 0 RmuC family DivIC PF04977.15 BAD84967.1 - 0.013 15.2 2.7 0.034 13.9 2.7 1.7 1 0 0 1 1 1 0 Septum formation initiator GAS PF13851.6 BAD84967.1 - 0.015 14.7 5.7 0.03 13.7 5.7 1.6 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding Sec34 PF04136.15 BAD84967.1 - 0.018 14.9 0.7 0.032 14.1 0.7 1.3 1 0 0 1 1 1 0 Sec34-like family Toprim_2 PF13155.6 BAD84967.1 - 0.024 15.0 0.0 0.051 14.0 0.0 1.6 1 0 0 1 1 1 0 Toprim-like GIT_CC PF16559.5 BAD84967.1 - 0.028 14.3 1.0 0.067 13.1 0.8 1.8 1 1 0 1 1 1 0 GIT coiled-coil Rho guanine nucleotide exchange factor CENP-H PF05837.12 BAD84967.1 - 0.032 14.6 1.1 0.13 12.7 1.0 2.1 1 1 0 1 1 1 0 Centromere protein H (CENP-H) Spc7 PF08317.11 BAD84967.1 - 0.04 12.8 2.9 0.051 12.4 2.9 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein HALZ PF02183.18 BAD84967.1 - 0.043 14.0 15.4 0.15 12.3 3.3 3.2 2 1 1 3 3 3 0 Homeobox associated leucine zipper GrpE PF01025.19 BAD84967.1 - 0.046 13.4 6.9 0.24 11.1 4.9 2.4 1 1 1 2 2 2 0 GrpE DUF4795 PF16043.5 BAD84967.1 - 0.046 13.3 3.7 0.077 12.6 3.3 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) MPS2 PF17060.5 BAD84967.1 - 0.054 12.8 1.4 0.081 12.2 1.4 1.3 1 0 0 1 1 1 0 Monopolar spindle protein 2 HAUS6_N PF14661.6 BAD84967.1 - 0.07 12.7 0.1 0.097 12.2 0.1 1.2 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 6 N-terminus Toprim_4 PF13662.6 BAD84967.1 - 0.091 13.2 0.3 0.47 11.0 0.3 2.3 1 1 0 1 1 1 0 Toprim domain SKA2 PF16740.5 BAD84967.1 - 0.1 12.4 1.0 0.27 11.0 1.0 1.8 1 0 0 1 1 1 0 Spindle and kinetochore-associated protein 2 KASH_CCD PF14662.6 BAD84967.1 - 0.11 12.3 5.5 0.093 12.6 3.0 1.9 2 0 0 2 2 2 0 Coiled-coil region of CCDC155 or KASH FapA PF03961.13 BAD84967.1 - 0.11 11.1 1.5 0.17 10.5 1.5 1.3 1 0 0 1 1 1 0 Flagellar Assembly Protein A DivIVA PF05103.13 BAD84967.1 - 0.11 12.5 3.8 0.46 10.6 3.2 2.3 1 1 1 2 2 2 0 DivIVA protein bZIP_1 PF00170.21 BAD84967.1 - 0.26 11.4 6.5 0.25 11.5 3.4 2.3 1 1 1 2 2 2 0 bZIP transcription factor UPF0242 PF06785.11 BAD84967.1 - 0.29 11.2 7.7 0.1 12.7 2.8 2.1 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus DASH_Dad3 PF08656.10 BAD84967.1 - 0.53 10.4 4.6 11 6.2 4.6 2.5 1 1 0 1 1 1 0 DASH complex subunit Dad3 APC_N_CC PF16689.5 BAD84967.1 - 2.2 8.4 8.1 0.49 10.5 4.3 1.9 2 0 0 2 2 1 0 Coiled-coil N-terminus of APC, dimerisation domain Cep57_CLD_2 PF14197.6 BAD84967.1 - 3 8.0 8.8 1.3 9.2 5.8 1.9 2 0 0 2 2 1 0 Centrosome localisation domain of PPC89 APG6_N PF17675.1 BAD84967.1 - 9.8 6.7 12.9 0.33 11.5 6.1 2.0 2 0 0 2 2 2 0 Apg6 coiled-coil region SfsA PF03749.13 BAD84968.1 - 1.4e-36 125.4 0.0 1.9e-36 125.0 0.0 1.2 1 0 0 1 1 1 1 Sugar fermentation stimulation protein RE domain SfsA_N PF17746.1 BAD84968.1 - 3.7e-13 49.4 0.0 6.6e-13 48.6 0.0 1.4 1 0 0 1 1 1 1 SfsA N-terminal OB domain Peptidase_M42 PF05343.14 BAD84970.1 - 4.3e-112 373.9 0.3 5e-112 373.7 0.3 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.28 BAD84970.1 - 2.3e-10 40.5 0.1 4.1e-10 39.7 0.1 1.4 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.17 BAD84970.1 - 0.00014 21.6 0.1 0.025 14.3 0.0 2.2 2 0 0 2 2 2 2 Peptidase family M28 Peptidase_M18 PF02127.15 BAD84970.1 - 0.0098 14.7 0.1 0.11 11.2 0.0 2.2 2 1 0 2 2 2 1 Aminopeptidase I zinc metalloprotease (M18) SurA_N_2 PF13623.6 BAD84972.1 - 0.091 12.6 0.0 0.12 12.2 0.0 1.2 1 0 0 1 1 1 0 SurA N-terminal domain Voltage_CLC PF00654.20 BAD84972.1 - 0.15 11.3 0.0 0.15 11.3 0.0 1.0 1 0 0 1 1 1 0 Voltage gated chloride channel HBB PF06777.11 BAD84973.1 - 8.2e-66 221.3 0.0 2e-65 220.0 0.0 1.7 2 0 0 2 2 2 1 Helical and beta-bridge domain Helicase_C_2 PF13307.6 BAD84973.1 - 3.7e-38 131.4 0.0 2.7e-37 128.5 0.0 2.1 2 0 0 2 2 2 1 Helicase C-terminal domain DEAD_2 PF06733.15 BAD84973.1 - 4.9e-34 117.5 0.4 1.2e-33 116.2 0.3 1.7 2 0 0 2 2 2 1 DEAD_2 ResIII PF04851.15 BAD84973.1 - 7.7e-10 39.0 0.0 2.1e-09 37.6 0.0 1.6 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD PF00270.29 BAD84973.1 - 1.5e-07 31.3 0.0 5e-05 23.1 0.0 2.6 2 0 0 2 2 2 2 DEAD/DEAH box helicase AAA_30 PF13604.6 BAD84973.1 - 0.0031 17.3 0.0 0.0096 15.6 0.0 1.9 2 0 0 2 2 2 1 AAA domain SNF2_N PF00176.23 BAD84973.1 - 0.082 11.6 0.0 0.75 8.5 0.0 2.3 1 1 0 1 1 1 0 SNF2 family N-terminal domain AAA_22 PF13401.6 BAD84973.1 - 0.2 11.9 0.3 2.8 8.2 0.1 2.4 1 1 0 2 2 2 0 AAA domain Rhomboid PF01694.22 BAD84975.1 - 6.8e-30 104.0 18.7 6.8e-30 104.0 18.7 1.8 2 1 0 2 2 2 1 Rhomboid family DUF1751 PF08551.10 BAD84975.1 - 3.9e-06 27.3 3.5 3.9e-06 27.3 3.5 2.0 2 1 0 2 2 2 1 Eukaryotic integral membrane protein (DUF1751) DER1 PF04511.15 BAD84975.1 - 0.45 10.4 9.1 0.28 11.1 6.0 2.1 1 1 1 2 2 2 0 Der1-like family Inositol_P PF00459.25 BAD84976.1 - 1e-39 136.7 0.0 2.4e-39 135.5 0.0 1.5 1 1 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.20 BAD84976.1 - 2.1e-07 30.6 0.0 3.2e-07 30.0 0.0 1.2 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase, N-terminal domain DUF63 PF01889.17 BAD84977.1 - 5.2e-88 295.8 11.5 5.8e-88 295.6 11.5 1.0 1 0 0 1 1 1 1 Membrane protein of unknown function DUF63 MtrC PF04211.13 BAD84977.1 - 0.067 12.2 0.2 0.1 11.7 0.2 1.2 1 0 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase, subunit C Fe-ADH_2 PF13685.6 BAD84978.1 - 1.1e-70 238.2 2.4 1.4e-70 237.8 2.4 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 BAD84978.1 - 1.9e-27 96.1 3.3 3e-26 92.1 3.3 2.0 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.20 BAD84978.1 - 6.8e-12 45.1 0.6 1.9e-11 43.6 0.6 1.7 1 1 0 1 1 1 1 3-dehydroquinate synthase PrpR_N PF06506.11 BAD84978.1 - 0.021 14.4 0.2 0.58 9.7 0.0 2.7 3 0 0 3 3 3 0 Propionate catabolism activator DAHP_snth_FXD PF18152.1 BAD84978.1 - 0.027 14.3 1.5 0.58 10.0 0.1 3.4 4 0 0 4 4 4 0 DAHP synthase ferredoxin-like domain PFK PF00365.20 BAD84978.1 - 0.037 13.4 0.1 0.065 12.6 0.1 1.4 1 0 0 1 1 1 0 Phosphofructokinase AIRC PF00731.20 BAD84978.1 - 0.051 13.1 0.5 0.11 12.0 0.5 1.6 1 0 0 1 1 1 0 AIR carboxylase DUF3236 PF11576.8 BAD84978.1 - 0.087 12.5 0.4 0.25 11.0 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3236) UPF0179 PF03684.13 BAD84979.1 - 2.2e-42 144.3 0.0 2.5e-42 144.1 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) E1_FCCH PF16190.5 BAD84979.1 - 0.0065 16.6 0.1 0.015 15.5 0.0 1.5 2 0 0 2 2 2 1 Ubiquitin-activating enzyme E1 FCCH domain ParE_toxin PF05016.15 BAD84980.1 - 5.5e-10 39.7 0.9 6.3e-10 39.5 0.9 1.1 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE ParE-like_toxin PF15781.5 BAD84980.1 - 0.00045 20.1 1.2 0.001 19.0 1.2 1.6 1 1 0 1 1 1 1 ParE-like toxin of type II bacterial toxin-antitoxin system Gp49 PF05973.14 BAD84980.1 - 0.00066 19.8 0.2 0.0008 19.5 0.2 1.1 1 0 0 1 1 1 1 Phage derived protein Gp49-like (DUF891) GCHY-1 PF02649.14 BAD84982.1 - 6.8e-65 219.1 1.7 7.7e-65 219.0 1.7 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 ATP-cone PF03477.16 BAD84982.1 - 0.021 15.4 1.1 18 6.0 0.0 3.3 3 0 0 3 3 3 0 ATP cone domain Val_tRNA-synt_C PF10458.9 BAD84982.1 - 0.025 14.8 1.6 0.21 11.9 0.1 2.3 2 0 0 2 2 2 0 Valyl tRNA synthetase tRNA binding arm McrBC PF10117.9 BAD84983.1 - 1.6e-69 234.5 0.0 1.9e-69 234.3 0.0 1.0 1 0 0 1 1 1 1 McrBC 5-methylcytosine restriction system component NERD PF08378.11 BAD84983.1 - 0.0022 18.4 0.0 0.0048 17.4 0.0 1.5 1 0 0 1 1 1 1 Nuclease-related domain AAA_5 PF07728.14 BAD84984.1 - 9.1e-17 61.3 0.0 2.6e-16 59.9 0.0 1.8 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 BAD84984.1 - 0.00015 22.2 0.0 0.00048 20.6 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 BAD84984.1 - 0.0004 20.8 0.0 0.00084 19.8 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain IstB_IS21 PF01695.17 BAD84984.1 - 0.0037 17.0 0.0 0.0067 16.2 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_25 PF13481.6 BAD84984.1 - 0.0065 16.1 0.0 0.011 15.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 BAD84984.1 - 0.0091 16.5 0.1 0.024 15.2 0.0 1.8 2 0 0 2 2 1 1 AAA domain AAA_22 PF13401.6 BAD84984.1 - 0.014 15.7 0.0 0.035 14.4 0.0 1.7 1 0 0 1 1 1 0 AAA domain TIP49 PF06068.13 BAD84984.1 - 0.049 12.8 0.0 0.25 10.5 0.0 2.0 2 0 0 2 2 2 0 TIP49 P-loop domain AAA_24 PF13479.6 BAD84984.1 - 0.055 13.2 0.0 0.1 12.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 BAD84984.1 - 0.069 13.4 0.0 0.23 11.7 0.0 1.9 2 0 0 2 2 2 0 AAA domain RuvB_N PF05496.12 BAD84984.1 - 0.12 12.1 0.0 0.27 10.9 0.0 1.5 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain RNA_helicase PF00910.22 BAD84984.1 - 0.14 12.6 0.0 0.54 10.7 0.0 2.0 2 0 0 2 2 2 0 RNA helicase AAA_11 PF13086.6 BAD84984.1 - 0.16 11.8 0.0 0.27 11.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 BAD84984.1 - 0.2 11.1 0.0 0.39 10.2 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region DUF1699 PF08004.11 BAD84985.1 - 9.8e-08 31.7 0.1 2e-07 30.8 0.1 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF1699) HTH_7 PF02796.15 BAD84985.1 - 4.9e-07 29.7 0.2 9.7e-07 28.8 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_23 PF13384.6 BAD84985.1 - 4.7e-06 26.2 0.0 8.9e-06 25.4 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.6 BAD84985.1 - 4.5e-05 23.5 0.0 0.00032 20.8 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_29 PF13551.6 BAD84985.1 - 8.8e-05 22.4 0.0 0.076 13.0 0.0 2.3 2 0 0 2 2 2 2 Winged helix-turn helix Sigma70_r4_2 PF08281.12 BAD84985.1 - 0.00046 19.8 0.2 0.0016 18.1 0.0 2.0 3 0 0 3 3 3 1 Sigma-70, region 4 HTH_Tnp_1 PF01527.20 BAD84985.1 - 0.0022 18.2 0.0 0.0058 16.9 0.0 1.7 2 0 0 2 2 2 1 Transposase HTH_32 PF13565.6 BAD84985.1 - 0.0027 18.3 0.0 0.0062 17.1 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain GerE PF00196.19 BAD84985.1 - 0.0087 15.6 0.0 0.016 14.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family PAX PF00292.18 BAD84985.1 - 0.017 15.1 0.1 0.12 12.3 0.0 2.0 1 1 1 2 2 2 0 'Paired box' domain HTH_Tnp_ISL3 PF13542.6 BAD84985.1 - 0.07 12.6 0.0 0.13 11.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 GTF2I PF02946.14 BAD84985.1 - 0.077 13.1 0.1 0.18 11.9 0.1 1.7 1 0 0 1 1 1 0 GTF2I-like repeat AT_hook PF02178.19 BAD84985.1 - 0.078 12.9 0.8 0.22 11.5 0.8 1.8 1 0 0 1 1 1 0 AT hook motif HTH_24 PF13412.6 BAD84985.1 - 0.12 12.0 0.0 0.31 10.6 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF530 PF04409.12 BAD84986.1 - 3.2e-29 101.7 10.3 3.6e-25 88.3 2.6 4.0 2 2 1 3 3 3 3 Protein of unknown function (DUF530) TP6A_N PF04406.14 BAD84987.1 - 1.1e-19 70.2 0.0 2e-19 69.3 0.0 1.5 1 0 0 1 1 1 1 Type IIB DNA topoisomerase RepB PF07506.11 BAD84987.1 - 0.0025 17.9 0.1 0.68 10.0 0.0 2.4 2 0 0 2 2 2 2 RepB plasmid partitioning protein DUF2399 PF09664.10 BAD84987.1 - 0.022 14.6 0.0 0.042 13.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function C-terminus (DUF2399) Topo-VIb_trans PF09239.11 BAD84988.1 - 7e-58 194.9 0.0 1.3e-57 194.1 0.0 1.4 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.26 BAD84988.1 - 7.4e-12 45.8 0.1 1.5e-11 44.8 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 BAD84988.1 - 4.7e-10 39.4 0.0 9.4e-10 38.5 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 BAD84988.1 - 0.083 12.8 0.0 0.21 11.5 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain KH_1 PF00013.29 BAD84989.1 - 1.4e-17 63.3 6.4 8.1e-10 38.4 0.2 2.5 2 0 0 2 2 2 2 KH domain KH_8 PF17903.1 BAD84989.1 - 2.7e-08 33.8 0.1 5.1e-08 32.9 0.1 1.4 1 0 0 1 1 1 1 Krr1 KH1 domain KH_2 PF07650.17 BAD84989.1 - 4.2e-06 26.5 6.1 0.0012 18.7 0.4 2.7 2 0 0 2 2 2 2 KH domain KH_4 PF13083.6 BAD84989.1 - 0.0056 16.5 5.3 0.51 10.3 0.2 3.1 2 1 1 3 3 3 2 KH domain SLS PF14611.6 BAD84989.1 - 0.0086 15.9 0.1 0.017 15.0 0.1 1.4 1 0 0 1 1 1 1 Mitochondrial inner-membrane-bound regulator DUF3487 PF11990.8 BAD84989.1 - 0.084 12.8 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3487) DUF4115 PF13464.6 BAD84989.1 - 0.12 12.6 1.3 1.8 8.8 0.1 3.0 2 2 2 4 4 4 0 Domain of unknown function (DUF4115) RIO1 PF01163.22 BAD84990.1 - 5.2e-55 186.0 0.0 1e-54 185.0 0.0 1.4 1 0 0 1 1 1 1 RIO1 family APH PF01636.23 BAD84990.1 - 1.7e-05 24.8 0.2 6.3e-05 23.0 0.0 1.9 1 1 1 2 2 2 1 Phosphotransferase enzyme family Pkinase PF00069.25 BAD84990.1 - 0.021 14.2 0.0 0.12 11.7 0.0 2.1 2 1 0 2 2 2 0 Protein kinase domain eIF-1a PF01176.19 BAD84991.1 - 1.1e-20 73.2 0.6 2.5e-20 72.0 0.5 1.7 2 0 0 2 2 2 1 Translation initiation factor 1A / IF-1 RsgA_N PF16745.5 BAD84991.1 - 1.2e-05 24.9 1.0 1.6e-05 24.5 0.1 1.7 2 0 0 2 2 2 1 RsgA N-terminal domain DUF4863 PF16155.5 BAD84991.1 - 0.061 13.2 0.0 0.07 13.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4863) ABC_tran PF00005.27 BAD84992.1 - 3.8e-28 98.7 0.0 5.1e-28 98.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 BAD84992.1 - 2.4e-16 60.4 0.0 5.7e-09 36.2 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 BAD84992.1 - 7.9e-08 32.0 0.0 8.4e-07 28.6 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 BAD84992.1 - 0.00064 20.3 0.0 0.0011 19.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 BAD84992.1 - 0.00091 18.9 0.1 0.0018 17.9 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 BAD84992.1 - 0.0011 18.8 0.0 0.052 13.2 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain RsgA_GTPase PF03193.16 BAD84992.1 - 0.0014 18.6 0.0 0.0029 17.5 0.0 1.6 1 0 0 1 1 1 1 RsgA GTPase AAA PF00004.29 BAD84992.1 - 0.0016 18.8 0.1 0.092 13.2 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 BAD84992.1 - 0.0019 18.5 0.1 0.012 15.9 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 BAD84992.1 - 0.0026 17.3 0.0 0.18 11.3 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 BAD84992.1 - 0.0062 16.3 0.0 0.0082 15.9 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 BAD84992.1 - 0.007 16.8 0.2 0.011 16.1 0.2 1.6 1 1 0 1 1 1 1 AAA ATPase domain SbcCD_C PF13558.6 BAD84992.1 - 0.0093 16.2 0.1 0.093 13.0 0.1 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit NACHT PF05729.12 BAD84992.1 - 0.01 15.8 0.2 0.026 14.5 0.0 1.7 2 0 0 2 2 2 0 NACHT domain AAA_13 PF13166.6 BAD84992.1 - 0.014 14.1 0.0 0.12 11.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain G-alpha PF00503.20 BAD84992.1 - 0.02 14.1 0.0 0.029 13.5 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit IstB_IS21 PF01695.17 BAD84992.1 - 0.028 14.2 0.0 1.6 8.4 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein TsaE PF02367.17 BAD84992.1 - 0.057 13.4 0.1 0.097 12.7 0.1 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ATPase_2 PF01637.18 BAD84992.1 - 0.063 13.2 0.0 0.28 11.1 0.0 1.8 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_24 PF13479.6 BAD84992.1 - 0.07 12.8 0.0 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 BAD84992.1 - 0.072 12.7 0.1 0.13 11.8 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_27 PF13514.6 BAD84992.1 - 0.072 12.7 0.0 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 BAD84992.1 - 0.074 13.0 0.0 0.17 11.8 0.0 1.5 2 0 0 2 2 2 0 Rad17 P-loop domain TniB PF05621.11 BAD84992.1 - 0.077 12.4 0.0 6.8 6.1 0.0 2.1 2 0 0 2 2 2 0 Bacterial TniB protein ATP-synt_ab PF00006.25 BAD84992.1 - 0.078 12.6 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain DUF3584 PF12128.8 BAD84992.1 - 0.096 10.2 0.1 0.13 9.8 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) SRP54 PF00448.22 BAD84992.1 - 0.096 12.3 0.1 0.17 11.5 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_33 PF13671.6 BAD84992.1 - 0.11 12.6 0.0 0.91 9.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain PhoH PF02562.16 BAD84992.1 - 0.13 11.7 0.0 0.22 11.0 0.0 1.3 1 0 0 1 1 1 0 PhoH-like protein AAA_7 PF12775.7 BAD84992.1 - 0.19 11.2 0.0 0.34 10.4 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_14 PF13173.6 BAD84992.1 - 0.2 11.7 0.0 0.55 10.3 0.0 1.7 2 0 0 2 2 2 0 AAA domain DLIC PF05783.11 BAD84992.1 - 0.22 10.3 0.0 0.38 9.5 0.0 1.3 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) ABC-3 PF00950.17 BAD84993.1 - 2.1e-27 96.3 37.1 2.7e-27 95.9 37.1 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.18 BAD84993.1 - 1.5e-05 24.2 34.1 1.5e-05 24.2 34.1 1.4 1 1 0 1 1 1 1 FecCD transport family RNase_HII PF01351.18 BAD84994.1 - 5.9e-50 169.9 0.0 8.5e-50 169.4 0.0 1.2 1 0 0 1 1 1 1 Ribonuclease HII GT87 PF09594.10 BAD84995.1 - 0.0017 18.1 20.6 0.0017 18.1 20.6 1.8 1 1 1 2 2 2 1 Glycosyltransferase family 87 Phage_holin_3_3 PF16083.5 BAD84995.1 - 0.021 14.9 1.4 0.089 12.9 1.4 2.1 1 0 0 1 1 1 0 LydA holin phage, holin superfamily III Methyltransf_25 PF13649.6 BAD84996.1 - 5.3e-08 33.5 0.0 1e-06 29.3 0.0 2.4 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 BAD84996.1 - 6.3e-08 32.6 0.0 1.2e-07 31.6 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 BAD84996.1 - 1.1e-06 28.3 0.0 1.6e-06 27.8 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_11 PF08241.12 BAD84996.1 - 0.00015 22.3 0.0 0.0015 19.2 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain PrmA PF06325.13 BAD84996.1 - 0.00026 20.5 0.0 0.0004 19.9 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 BAD84996.1 - 0.0023 17.5 0.0 0.0039 16.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_23 PF13489.6 BAD84996.1 - 0.019 14.8 0.0 0.032 14.1 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_18 PF12847.7 BAD84996.1 - 0.033 14.1 0.0 0.1 12.5 0.0 1.7 2 0 0 2 2 2 0 Methyltransferase domain Thump_like PF18096.1 BAD84996.1 - 0.041 13.8 0.7 0.089 12.7 0.1 1.9 2 0 0 2 2 2 0 THUMP domain-like Methyltransf_12 PF08242.12 BAD84996.1 - 0.054 14.2 0.0 0.19 12.5 0.0 1.9 2 0 0 2 2 2 0 Methyltransferase domain UPF0020 PF01170.18 BAD84996.1 - 0.055 13.1 0.0 0.097 12.3 0.0 1.4 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Met_10 PF02475.16 BAD84996.1 - 0.091 12.5 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 Met-10+ like-protein AdoMet_MTase PF07757.13 BAD84996.1 - 0.17 12.3 0.0 0.42 11.0 0.0 1.6 1 0 0 1 1 1 0 Predicted AdoMet-dependent methyltransferase Ubie_methyltran PF01209.18 BAD84996.1 - 0.17 11.2 0.0 0.29 10.5 0.0 1.3 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family SIS PF01380.22 BAD84998.1 - 3.3e-59 198.4 1.3 7.3e-32 110.0 1.4 2.2 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.6 BAD84998.1 - 3.7e-24 85.4 0.0 8.5e-24 84.3 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 BAD84998.1 - 5.7e-21 74.7 0.0 1.3e-20 73.5 0.0 1.7 1 0 0 1 1 1 1 Glutamine amidotransferase domain SIS_2 PF13580.6 BAD84998.1 - 0.0017 18.3 1.3 0.044 13.8 0.1 3.1 2 1 1 3 3 3 1 SIS domain GATase_4 PF13230.6 BAD84998.1 - 0.0071 15.3 0.0 0.014 14.3 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferases class-II bact-PGI_C PF10432.9 BAD84998.1 - 0.011 15.8 0.1 7 6.7 0.3 3.0 2 2 0 2 2 2 0 Bacterial phospho-glucose isomerase C-terminal SIS domain PNP_UDP_1 PF01048.20 BAD84998.1 - 0.015 14.5 0.0 0.021 14.1 0.0 1.3 1 0 0 1 1 1 0 Phosphorylase superfamily OST_P2 PF18235.1 BAD84999.1 - 3.4e-60 201.8 0.5 7.4e-60 200.7 0.5 1.6 1 0 0 1 1 1 1 Oligosaccharyltransferase Peripheral 2 domain STT3 PF02516.14 BAD84999.1 - 2.3e-11 43.3 25.5 3.5e-11 42.7 25.5 1.2 1 0 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit PMT_2 PF13231.6 BAD84999.1 - 3.7e-08 33.8 7.4 3.7e-08 33.8 7.4 3.4 2 1 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase ADK PF00406.22 BAD85001.1 - 1.1e-41 142.5 0.0 1.4e-41 142.1 0.0 1.1 1 0 0 1 1 1 1 Adenylate kinase ADK_lid PF05191.14 BAD85001.1 - 7.4e-21 73.8 2.2 1.7e-20 72.7 2.2 1.6 1 0 0 1 1 1 1 Adenylate kinase, active site lid AAA_17 PF13207.6 BAD85001.1 - 5.7e-20 72.1 0.0 1e-19 71.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 BAD85001.1 - 4.2e-08 33.4 0.0 9.6e-08 32.3 0.0 1.5 2 0 0 2 2 1 1 AAA domain AAA_18 PF13238.6 BAD85001.1 - 6.6e-05 23.5 0.6 0.00011 22.8 0.0 1.7 2 1 0 2 2 1 1 AAA domain Cytidylate_kin PF02224.18 BAD85001.1 - 0.0013 18.5 0.0 0.0023 17.7 0.0 1.3 1 0 0 1 1 1 1 Cytidylate kinase Thymidylate_kin PF02223.17 BAD85001.1 - 0.0077 15.9 0.0 0.07 12.8 0.0 2.2 3 0 0 3 3 2 1 Thymidylate kinase AAA_22 PF13401.6 BAD85001.1 - 0.0087 16.3 0.0 0.019 15.2 0.0 1.7 2 0 0 2 2 2 1 AAA domain A2L_zn_ribbon PF08792.10 BAD85001.1 - 0.009 15.7 0.1 1.7 8.5 0.0 2.5 2 0 0 2 2 2 1 A2L zinc ribbon domain TF_Zn_Ribbon PF08271.12 BAD85001.1 - 0.016 14.7 0.7 0.033 13.7 0.7 1.6 1 0 0 1 1 1 0 TFIIB zinc-binding Zeta_toxin PF06414.12 BAD85001.1 - 0.016 14.5 0.0 0.029 13.6 0.0 1.4 1 1 0 1 1 1 0 Zeta toxin zf-RRN7 PF11781.8 BAD85001.1 - 0.017 14.8 1.4 0.7 9.6 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 AAA PF00004.29 BAD85001.1 - 0.018 15.5 0.0 0.032 14.7 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) zf-ribbon_3 PF13248.6 BAD85001.1 - 0.023 14.1 1.4 0.41 10.1 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-C4_Topoisom PF01396.19 BAD85001.1 - 0.033 14.0 0.7 4.7 7.1 0.1 2.5 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger DZR PF12773.7 BAD85001.1 - 0.044 13.8 0.3 0.089 12.8 0.3 1.4 1 1 0 1 1 1 0 Double zinc ribbon DUF3039 PF11238.8 BAD85001.1 - 0.05 13.4 0.6 0.098 12.4 0.6 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3039) zf-C2HC5 PF06221.13 BAD85001.1 - 0.051 13.6 0.1 0.076 13.0 0.1 1.2 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type AAA_24 PF13479.6 BAD85001.1 - 0.051 13.3 0.0 0.11 12.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain Prok-RING_1 PF14446.6 BAD85001.1 - 0.06 13.3 2.9 0.45 10.5 0.4 2.2 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 AAA_28 PF13521.6 BAD85001.1 - 0.072 13.3 0.0 0.14 12.4 0.0 1.5 2 0 0 2 2 1 0 AAA domain ABC_tran PF00005.27 BAD85001.1 - 0.11 13.0 0.0 0.14 12.7 0.0 1.3 1 0 0 1 1 1 0 ABC transporter HypA PF01155.19 BAD85001.1 - 0.12 12.4 0.0 0.17 11.9 0.0 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA FtsK_SpoIIIE PF01580.18 BAD85001.1 - 0.12 11.7 0.0 0.21 10.9 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family Viral_helicase1 PF01443.18 BAD85001.1 - 0.14 11.9 0.0 0.19 11.5 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase RNA_helicase PF00910.22 BAD85001.1 - 0.15 12.5 0.0 0.33 11.4 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_29 PF13555.6 BAD85001.1 - 0.18 11.6 0.0 0.3 10.8 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain Zn_ribbon_recom PF13408.6 BAD85001.1 - 0.18 12.3 1.6 3.4 8.2 1.6 2.3 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain Nudix_N_2 PF14803.6 BAD85001.1 - 0.63 10.0 5.4 5.8 6.9 0.5 2.4 2 0 0 2 2 2 0 Nudix N-terminal DUF2258 PF10015.9 BAD85002.1 - 2.2e-24 85.3 2.2 4.6e-24 84.4 0.2 2.1 2 1 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2258) Tsc35 PF15079.6 BAD85002.1 - 0.017 14.7 2.7 0.027 14.1 2.7 1.4 1 0 0 1 1 1 0 Testis-specific protein 35 DUF2203 PF09969.9 BAD85002.1 - 0.019 15.7 7.2 1.4 9.7 0.3 2.2 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) Laminin_II PF06009.12 BAD85002.1 - 0.038 14.0 5.7 0.031 14.3 4.3 1.5 2 0 0 2 2 2 0 Laminin Domain II GldM_N PF12081.8 BAD85002.1 - 0.052 13.6 4.0 0.054 13.6 3.1 1.4 2 0 0 2 2 2 0 GldM N-terminal domain Fib_alpha PF08702.10 BAD85002.1 - 0.074 13.2 3.3 0.11 12.7 3.3 1.2 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family DUF2785 PF10978.8 BAD85002.1 - 0.075 12.8 1.2 8.3 6.1 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2785) DUF2205 PF10224.9 BAD85002.1 - 0.19 11.8 7.3 0.39 10.7 7.3 1.6 1 0 0 1 1 1 0 Short coiled-coil protein CENP-H PF05837.12 BAD85002.1 - 1.1 9.7 10.8 1.8 9.0 9.9 1.7 2 0 0 2 2 2 0 Centromere protein H (CENP-H) UPF0449 PF15136.6 BAD85002.1 - 1.2 9.7 6.8 1.5 9.3 6.3 1.5 1 1 0 1 1 1 0 Uncharacterised protein family UPF0449 DUF16 PF01519.16 BAD85002.1 - 1.9 9.0 8.1 0.57 10.7 5.3 1.5 2 0 0 2 2 2 0 Protein of unknown function DUF16 APG6_N PF17675.1 BAD85002.1 - 3.4 8.2 15.9 5.2 7.6 16.0 1.4 1 1 0 1 1 1 0 Apg6 coiled-coil region Lactamase_B PF00753.27 BAD85003.1 - 3.3e-07 30.5 0.6 8.1e-07 29.2 0.6 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 BAD85003.1 - 6.7e-05 22.5 0.1 0.0001 21.9 0.1 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Flavodoxin_1 PF00258.25 BAD85003.1 - 0.00055 20.2 0.0 0.00096 19.4 0.0 1.4 1 0 0 1 1 1 1 Flavodoxin Lactamase_B_6 PF16661.5 BAD85003.1 - 0.017 14.6 0.0 0.027 13.9 0.0 1.3 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain FMN_red PF03358.15 BAD85003.1 - 0.047 13.4 0.0 0.086 12.6 0.0 1.3 1 0 0 1 1 1 0 NADPH-dependent FMN reductase Tautomerase PF01361.21 BAD85003.1 - 0.062 13.2 0.0 0.22 11.5 0.0 2.0 2 0 0 2 2 2 0 Tautomerase enzyme AhpC-TSA PF00578.21 BAD85004.1 - 5.4e-32 110.3 0.0 6.3e-32 110.1 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 BAD85004.1 - 2.2e-20 72.9 0.0 2.4e-20 72.8 0.0 1.0 1 0 0 1 1 1 1 Redoxin SCO1-SenC PF02630.14 BAD85004.1 - 4.9e-06 26.5 0.0 7.4e-06 25.9 0.0 1.2 1 0 0 1 1 1 1 SCO1/SenC GSHPx PF00255.19 BAD85004.1 - 0.011 15.3 0.0 0.014 15.0 0.0 1.2 1 0 0 1 1 1 0 Glutathione peroxidase Prenyltrans PF00432.21 BAD85004.1 - 0.027 14.2 0.0 0.18 11.6 0.0 2.1 2 0 0 2 2 2 0 Prenyltransferase and squalene oxidase repeat TPP_enzyme_C PF02775.21 BAD85005.1 - 1.9e-32 112.1 0.2 3.5e-32 111.3 0.2 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.8 BAD85005.1 - 5.9e-26 90.4 0.6 1.1e-25 89.5 0.3 1.7 2 0 0 2 2 2 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal Peripla_BP_3 PF13377.6 BAD85005.1 - 0.21 11.9 0.0 2.8 8.3 0.0 2.2 2 0 0 2 2 2 0 Periplasmic binding protein-like domain POR_N PF01855.19 BAD85006.1 - 1.5e-58 198.2 0.1 2.2e-58 197.7 0.1 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.18 BAD85006.1 - 1.6e-31 109.8 0.3 3.5e-31 108.7 0.3 1.6 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_N PF02776.18 BAD85006.1 - 0.0075 15.9 0.6 0.021 14.4 0.7 1.7 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Transketolase_C PF02780.20 BAD85006.1 - 0.048 13.5 0.0 0.12 12.3 0.0 1.7 1 0 0 1 1 1 0 Transketolase, C-terminal domain PMSR PF01625.21 BAD85008.1 - 1.3e-60 204.0 0.2 2.3e-60 203.2 0.0 1.4 2 0 0 2 2 2 1 Peptide methionine sulfoxide reductase SelR PF01641.18 BAD85008.1 - 6.4e-38 129.5 0.0 9.7e-38 129.0 0.0 1.3 1 0 0 1 1 1 1 SelR domain Laminin_G_3 PF13385.6 BAD85010.1 - 3.4e-12 46.8 0.0 6e-12 46.0 0.0 1.5 1 0 0 1 1 1 1 Concanavalin A-like lectin/glucanases superfamily Laminin_G_1 PF00054.23 BAD85010.1 - 0.15 12.2 0.0 0.25 11.6 0.0 1.3 1 0 0 1 1 1 0 Laminin G domain DUF835 PF05763.12 BAD85011.1 - 9.8e-28 96.6 0.0 1.4e-27 96.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF835) UNC-50 PF05216.13 BAD85011.1 - 0.34 10.4 1.1 0.51 9.9 1.1 1.2 1 0 0 1 1 1 0 UNC-50 family LPAM_1 PF08139.12 BAD85012.1 - 1.1 9.9 6.2 0.29 11.7 1.5 2.4 2 0 0 2 2 2 0 Prokaryotic membrane lipoprotein lipid attachment site Rubrerythrin PF02915.17 BAD85013.1 - 2e-17 63.8 6.2 2.9e-17 63.4 6.2 1.2 1 0 0 1 1 1 1 Rubrerythrin COQ7 PF03232.13 BAD85013.1 - 0.00022 21.1 1.0 0.0091 15.8 0.1 2.1 2 0 0 2 2 2 1 Ubiquinone biosynthesis protein COQ7 FAD_binding_1 PF00667.20 BAD85013.1 - 0.00027 20.6 1.6 0.19 11.3 0.1 2.1 1 1 1 2 2 2 2 FAD binding domain Ferritin_2 PF13668.6 BAD85013.1 - 0.0053 17.0 0.9 3.4 7.9 0.0 2.2 2 0 0 2 2 2 2 Ferritin-like domain DUF2383 PF09537.10 BAD85013.1 - 0.018 15.3 1.3 2.3 8.6 0.2 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF2383) DUF4439 PF14530.6 BAD85013.1 - 0.066 13.9 2.8 0.19 12.4 0.6 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4439) DUF1462 PF07315.11 BAD85013.1 - 0.068 13.5 0.8 0.8 10.0 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1462) HTH_36 PF13730.6 BAD85014.1 - 0.00023 21.1 0.1 0.00031 20.6 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 BAD85014.1 - 0.00046 20.0 0.0 0.00052 19.9 0.0 1.0 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 BAD85014.1 - 0.00047 19.7 0.0 0.00052 19.5 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 BAD85014.1 - 0.0023 17.7 0.0 0.0024 17.6 0.0 1.1 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.6 BAD85014.1 - 0.0024 17.8 0.0 0.0027 17.6 0.0 1.2 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain HARE-HTH PF05066.13 BAD85014.1 - 0.0031 17.9 0.1 0.0035 17.7 0.1 1.3 1 1 0 1 1 1 1 HB1, ASXL, restriction endonuclease HTH domain MarR PF01047.22 BAD85014.1 - 0.0035 17.2 0.0 0.004 17.0 0.0 1.1 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 BAD85014.1 - 0.0062 16.4 0.1 0.0068 16.3 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 BAD85014.1 - 0.0078 16.1 0.0 0.0084 16.0 0.0 1.0 1 0 0 1 1 1 1 HTH domain Rrf2 PF02082.20 BAD85014.1 - 0.0082 16.5 0.0 0.0085 16.4 0.0 1.1 1 0 0 1 1 1 1 Transcriptional regulator SMC_ScpB PF04079.16 BAD85014.1 - 0.019 14.6 0.0 0.019 14.6 0.0 1.0 1 0 0 1 1 1 0 Segregation and condensation complex subunit ScpB HTH_5 PF01022.20 BAD85014.1 - 0.019 14.8 0.0 0.026 14.4 0.0 1.2 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family Phage_pRha PF09669.10 BAD85014.1 - 0.02 15.4 0.0 0.023 15.2 0.0 1.1 1 0 0 1 1 1 0 Phage regulatory protein Rha (Phage_pRha) HTH_AsnC-type PF13404.6 BAD85014.1 - 0.026 14.3 0.0 0.03 14.2 0.0 1.2 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain TFIIE_alpha PF02002.17 BAD85014.1 - 0.042 13.7 0.1 0.046 13.6 0.1 1.0 1 0 0 1 1 1 0 TFIIE alpha subunit DUF2336 PF10098.9 BAD85014.1 - 0.065 12.7 0.0 0.065 12.7 0.0 1.0 1 0 0 1 1 1 0 Uncharacterised protein conserved in bacteria (DUF2336) HTH_20 PF12840.7 BAD85014.1 - 0.067 13.3 0.0 0.1 12.7 0.0 1.3 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_27 PF13463.6 BAD85014.1 - 0.077 13.5 0.0 0.09 13.3 0.0 1.1 1 0 0 1 1 1 0 Winged helix DNA-binding domain Rubrerythrin PF02915.17 BAD85015.1 - 1.1e-13 51.8 16.9 1.6e-13 51.2 16.9 1.3 1 0 0 1 1 1 1 Rubrerythrin Mn_catalase PF05067.12 BAD85015.1 - 0.0071 15.4 0.7 0.012 14.6 0.3 1.5 1 1 0 1 1 1 1 Manganese containing catalase FAD_binding_1 PF00667.20 BAD85015.1 - 0.012 15.2 3.3 0.078 12.5 0.4 2.1 1 1 0 2 2 2 0 FAD binding domain Ferritin_2 PF13668.6 BAD85015.1 - 0.029 14.6 5.1 0.44 10.7 5.0 2.1 1 1 0 1 1 1 0 Ferritin-like domain PCP_red PF08369.10 BAD85015.1 - 0.25 11.6 4.6 5.2 7.4 0.4 3.1 2 1 1 3 3 3 0 Proto-chlorophyllide reductase 57 kD subunit MFS_1 PF07690.16 BAD85016.1 - 5.9e-20 71.5 74.1 1.3e-17 63.7 39.1 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 BAD85016.1 - 0.00022 20.2 17.2 0.00022 20.2 17.2 2.1 1 1 1 2 2 2 2 MFS_1 like family Pyr_redox_2 PF07992.14 BAD85017.1 - 1.6e-54 185.2 0.3 1.9e-54 184.9 0.3 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 BAD85017.1 - 2.3e-24 85.7 2.0 1.9e-19 70.0 0.2 3.0 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 BAD85017.1 - 1e-10 41.4 0.0 7.9e-08 31.9 0.0 2.1 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 BAD85017.1 - 7.5e-08 32.3 1.0 0.035 13.7 0.8 4.0 4 0 0 4 4 4 2 FAD dependent oxidoreductase Rubredoxin_C PF18267.1 BAD85017.1 - 1.2e-05 25.1 0.0 3.2e-05 23.8 0.0 1.7 1 0 0 1 1 1 1 Rubredoxin NAD+ reductase C-terminal domain FAD_binding_3 PF01494.19 BAD85017.1 - 5.7e-05 22.5 0.6 0.075 12.3 0.4 2.5 2 1 1 3 3 3 2 FAD binding domain TrkA_N PF02254.18 BAD85017.1 - 0.00021 21.5 0.2 0.56 10.5 0.0 3.2 3 0 0 3 3 3 2 TrkA-N domain NAD_binding_8 PF13450.6 BAD85017.1 - 0.00026 21.1 0.1 0.22 11.8 0.1 2.7 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 BAD85017.1 - 0.0016 17.6 3.0 0.065 12.3 0.4 2.8 2 1 1 3 3 3 1 Glucose inhibited division protein A Lycopene_cycl PF05834.12 BAD85017.1 - 0.0072 15.4 0.1 2.1 7.3 0.1 2.2 2 0 0 2 2 2 2 Lycopene cyclase protein HI0933_like PF03486.14 BAD85017.1 - 0.011 14.4 0.3 6.6 5.3 0.0 2.9 3 0 0 3 3 3 0 HI0933-like protein ApbA PF02558.16 BAD85017.1 - 0.015 14.9 0.6 0.068 12.8 0.1 2.3 3 0 0 3 3 3 0 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.18 BAD85017.1 - 0.02 14.8 0.0 0.034 14.0 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_2 PF00890.24 BAD85017.1 - 0.027 13.6 1.4 8 5.4 0.2 3.0 3 0 0 3 3 3 0 FAD binding domain Thi4 PF01946.17 BAD85017.1 - 0.069 12.4 0.1 4.9 6.3 0.0 2.3 2 0 0 2 2 2 0 Thi4 family NAD_binding_9 PF13454.6 BAD85017.1 - 0.078 13.0 1.9 16 5.5 0.0 3.1 3 0 0 3 3 3 0 FAD-NAD(P)-binding F420_oxidored PF03807.17 BAD85017.1 - 0.097 13.3 0.3 2.4 8.8 0.1 2.6 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent DUF998 PF06197.13 BAD85018.1 - 1.4e-23 83.5 13.7 1.6e-23 83.2 13.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF998) YfhO PF09586.10 BAD85018.1 - 0.014 13.7 9.3 0.016 13.4 9.3 1.1 1 0 0 1 1 1 0 Bacterial membrane protein YfhO Pox_J1 PF03338.15 BAD85018.1 - 0.019 14.8 0.1 0.085 12.7 0.0 1.9 2 0 0 2 2 2 0 Poxvirus J1 protein L6_membrane PF05805.12 BAD85018.1 - 0.026 14.1 0.3 0.049 13.2 0.3 1.5 1 0 0 1 1 1 0 L6 membrane protein ATPase PF06745.13 BAD85019.1 - 1.1e-15 57.6 0.3 1.2e-15 57.5 0.3 1.0 1 0 0 1 1 1 1 KaiC DUF2075 PF09848.9 BAD85019.1 - 0.0017 17.6 0.0 0.0021 17.4 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_25 PF13481.6 BAD85019.1 - 0.0041 16.7 0.0 0.0045 16.6 0.0 1.1 1 0 0 1 1 1 1 AAA domain DnaB_C PF03796.15 BAD85019.1 - 0.072 12.4 0.0 0.072 12.4 0.0 1.0 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain Zeta_toxin PF06414.12 BAD85019.1 - 0.073 12.3 0.0 0.079 12.2 0.0 1.1 1 0 0 1 1 1 0 Zeta toxin AAA_22 PF13401.6 BAD85019.1 - 0.11 12.8 0.0 0.13 12.6 0.0 1.1 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 BAD85019.1 - 0.13 12.6 0.0 0.13 12.6 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain Septin PF00735.18 BAD85019.1 - 0.16 11.2 0.0 0.18 11.0 0.0 1.1 1 0 0 1 1 1 0 Septin AAA_7 PF12775.7 BAD85019.1 - 0.17 11.4 0.0 0.17 11.4 0.0 1.1 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_24 PF13479.6 BAD85019.1 - 0.19 11.4 0.1 0.22 11.3 0.1 1.1 1 0 0 1 1 1 0 AAA domain 1-cysPrx_C PF10417.9 BAD85020.1 - 7.4e-06 25.7 0.0 9e-06 25.4 0.0 1.2 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin SeqA_N PF17206.3 BAD85020.1 - 0.026 13.8 0.1 0.035 13.4 0.1 1.2 1 0 0 1 1 1 0 SeqA protein N-terminal domain MFS_1 PF07690.16 BAD85022.1 - 1.6e-15 56.9 36.2 1.6e-15 56.9 36.2 2.0 1 1 0 2 2 2 1 Major Facilitator Superfamily MFS_1_like PF12832.7 BAD85022.1 - 8e-06 25.0 26.9 1.4e-05 24.1 21.9 3.2 1 1 1 2 2 2 1 MFS_1 like family PT-VENN PF04829.13 BAD85022.1 - 0.15 12.1 0.3 6.3 7.0 0.1 2.6 2 0 0 2 2 2 0 Pre-toxin domain with VENN motif Arc_trans_TRASH PF08394.10 BAD85023.1 - 4e-21 75.0 9.4 7.8e-21 74.1 9.4 1.5 1 0 0 1 1 1 1 Archaeal TRASH domain HTH_24 PF13412.6 BAD85023.1 - 1.1e-16 60.1 0.5 1.7e-16 59.5 0.5 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 BAD85023.1 - 7.8e-15 54.4 2.8 1.1e-14 53.9 2.8 1.2 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 BAD85023.1 - 5.7e-09 35.8 0.1 1.1e-08 34.9 0.1 1.4 1 0 0 1 1 1 1 HTH domain HTH_5 PF01022.20 BAD85023.1 - 1.6e-08 34.3 0.1 2.9e-08 33.4 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 BAD85023.1 - 2.1e-07 30.7 0.1 3.8e-07 29.9 0.1 1.4 1 0 0 1 1 1 1 MarR family GntR PF00392.21 BAD85023.1 - 1.1e-06 28.2 0.3 2e-06 27.3 0.3 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_20 PF12840.7 BAD85023.1 - 1.5e-06 28.1 0.1 2.6e-06 27.4 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 BAD85023.1 - 1.8e-06 27.8 0.1 3.7e-06 26.8 0.1 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_DeoR PF08220.12 BAD85023.1 - 2.1e-06 27.4 0.0 3.9e-06 26.5 0.0 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_Mga PF08280.11 BAD85023.1 - 3.7e-06 26.9 0.1 6e-06 26.2 0.1 1.3 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_IclR PF09339.10 BAD85023.1 - 5.7e-06 26.0 0.1 8.9e-06 25.4 0.1 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_29 PF13551.6 BAD85023.1 - 6.5e-06 26.1 0.0 1.2e-05 25.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix MarR PF01047.22 BAD85023.1 - 6.9e-06 25.9 0.0 1.2e-05 25.1 0.0 1.3 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.19 BAD85023.1 - 7e-06 26.1 0.0 1.5e-05 25.1 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_23 PF13384.6 BAD85023.1 - 9.2e-06 25.3 0.0 1.6e-05 24.5 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_30 PF13556.6 BAD85023.1 - 1.7e-05 24.5 0.0 3e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain TrmB PF01978.19 BAD85023.1 - 4.7e-05 23.2 0.1 0.00012 21.9 0.1 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_28 PF13518.6 BAD85023.1 - 6.1e-05 23.1 0.0 9.8e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain zf-FCS PF06467.14 BAD85023.1 - 6.3e-05 22.8 5.4 0.00011 22.1 5.4 1.4 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif HTH_8 PF02954.19 BAD85023.1 - 0.0002 21.1 0.0 0.00047 19.9 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family Sigma70_r4 PF04545.16 BAD85023.1 - 0.00049 19.6 0.1 0.00089 18.7 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 Rrf2 PF02082.20 BAD85023.1 - 0.00056 20.2 0.0 0.0011 19.2 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator Sigma70_r4_2 PF08281.12 BAD85023.1 - 0.00062 19.4 0.1 0.0011 18.7 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_41 PF14502.6 BAD85023.1 - 0.00069 19.2 0.1 0.0018 17.9 0.0 1.7 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_10 PF04967.12 BAD85023.1 - 0.0011 18.7 0.1 0.0021 17.8 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_36 PF13730.6 BAD85023.1 - 0.0015 18.5 0.2 0.0031 17.4 0.0 1.7 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_17 PF12728.7 BAD85023.1 - 0.0031 17.7 0.0 0.0066 16.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Mga PF05043.13 BAD85023.1 - 0.0035 17.9 0.0 0.0082 16.7 0.0 1.6 1 0 0 1 1 1 1 Mga helix-turn-helix domain DUF2089 PF09862.9 BAD85023.1 - 0.0036 17.3 1.0 0.0068 16.4 0.0 2.1 3 0 0 3 3 1 1 Protein of unknown function (DUF2089) YHS PF04945.13 BAD85023.1 - 0.0043 17.1 2.8 0.008 16.3 2.5 1.6 1 1 0 1 1 1 1 YHS domain HTH_CodY PF08222.11 BAD85023.1 - 0.0044 16.5 0.1 0.0083 15.7 0.1 1.4 1 0 0 1 1 1 1 CodY helix-turn-helix domain HTH_3 PF01381.22 BAD85023.1 - 0.0073 16.3 0.0 0.017 15.2 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix FaeA PF04703.12 BAD85023.1 - 0.0073 16.7 0.0 0.017 15.5 0.0 1.6 1 0 0 1 1 1 1 FaeA-like protein HTH_1 PF00126.27 BAD85023.1 - 0.0089 16.0 0.0 0.016 15.2 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family AsnC_trans_reg PF01037.21 BAD85023.1 - 0.014 15.3 0.0 0.025 14.6 0.0 1.5 1 0 0 1 1 1 0 Lrp/AsnC ligand binding domain MerR PF00376.23 BAD85023.1 - 0.016 14.9 0.1 0.032 14.0 0.1 1.5 1 0 0 1 1 1 0 MerR family regulatory protein LIM PF00412.22 BAD85023.1 - 0.018 15.3 2.2 0.03 14.6 2.2 1.3 1 0 0 1 1 1 0 LIM domain HTH_22 PF13309.6 BAD85023.1 - 0.018 15.1 0.0 0.049 13.7 0.0 1.9 1 0 0 1 1 1 0 HTH domain PaaX PF07848.12 BAD85023.1 - 0.045 14.0 0.1 0.079 13.2 0.1 1.3 1 0 0 1 1 1 0 PaaX-like protein FeoC PF09012.10 BAD85023.1 - 0.051 13.7 0.3 0.27 11.3 0.0 2.1 2 0 0 2 2 2 0 FeoC like transcriptional regulator LexA_DNA_bind PF01726.16 BAD85023.1 - 0.065 13.0 0.1 0.13 12.0 0.1 1.5 1 0 0 1 1 1 0 LexA DNA binding domain TetR_N PF00440.23 BAD85023.1 - 0.066 13.0 0.0 0.14 12.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_31 PF13560.6 BAD85023.1 - 0.069 13.5 0.1 0.13 12.6 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_27 PF13463.6 BAD85023.1 - 0.07 13.6 0.1 0.15 12.6 0.1 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HxlR PF01638.17 BAD85023.1 - 0.077 12.9 0.3 0.19 11.6 0.1 1.8 2 0 0 2 2 1 0 HxlR-like helix-turn-helix HTH_37 PF13744.6 BAD85023.1 - 0.079 12.9 0.0 0.18 11.8 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 BAD85023.1 - 0.08 12.4 0.0 0.13 11.7 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_26 PF13443.6 BAD85023.1 - 0.08 13.4 0.0 0.17 12.3 0.0 1.6 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain VATC PF18716.1 BAD85023.1 - 0.088 12.7 4.9 0.16 11.8 4.9 1.3 1 0 0 1 1 1 0 Vms1-associating treble clef domain DUF1441 PF07278.11 BAD85023.1 - 0.098 12.6 0.0 0.15 11.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1441) Sgf11 PF08209.11 BAD85023.1 - 0.098 12.2 3.8 2.9 7.5 0.5 2.5 3 0 0 3 3 2 0 Sgf11 (transcriptional regulation protein) HTH_47 PF16221.5 BAD85023.1 - 0.11 12.0 0.1 0.23 11.1 0.1 1.5 1 0 0 1 1 1 0 winged helix-turn-helix RPA_C PF08784.11 BAD85023.1 - 0.12 13.0 0.1 0.3 11.8 0.0 1.6 2 0 0 2 2 1 0 Replication protein A C terminal SgrR_N PF12793.7 BAD85023.1 - 0.15 12.2 0.0 0.21 11.8 0.0 1.4 1 0 0 1 1 1 0 Sugar transport-related sRNA regulator N-term DUF3268 PF11672.8 BAD85023.1 - 0.66 10.3 3.0 1.1 9.6 3.0 1.3 1 0 0 1 1 1 0 zinc-finger-containing domain zf-C2H2_6 PF13912.6 BAD85023.1 - 2.1 8.4 12.2 3.2 7.8 1.2 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger zf-H2C2_2 PF13465.6 BAD85023.1 - 7.1 7.3 12.4 8.3 7.0 1.0 2.3 2 0 0 2 2 2 0 Zinc-finger double domain ATP-grasp PF02222.22 BAD85024.1 - 3.8e-46 156.8 0.0 5.8e-46 156.2 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain PurK_C PF17769.1 BAD85024.1 - 7.2e-17 60.8 0.0 1.6e-16 59.7 0.0 1.6 1 0 0 1 1 1 1 Phosphoribosylaminoimidazole carboxylase C-terminal domain ATP-grasp_3 PF02655.14 BAD85024.1 - 1.1e-11 45.0 0.1 1.9e-11 44.3 0.1 1.4 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.13 BAD85024.1 - 1.9e-06 27.6 0.2 1e-05 25.2 0.2 2.0 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus RimK PF08443.11 BAD85024.1 - 0.0018 17.9 0.0 0.0033 17.0 0.0 1.5 1 0 0 1 1 1 1 RimK-like ATP-grasp domain 2-Hacid_dh_C PF02826.19 BAD85024.1 - 0.011 15.1 0.0 0.023 14.1 0.0 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LAL_C2 PF18603.1 BAD85024.1 - 0.086 13.0 1.6 0.81 9.9 0.1 2.9 3 0 0 3 3 3 0 L-amino acid ligase C-terminal domain 2 XdhC_C PF13478.6 BAD85024.1 - 0.11 13.0 0.0 0.36 11.3 0.0 2.0 2 1 0 2 2 2 0 XdhC Rossmann domain AIRC PF00731.20 BAD85025.1 - 6.4e-73 243.2 0.3 7.8e-73 242.9 0.3 1.1 1 0 0 1 1 1 1 AIR carboxylase PrpR_N PF06506.11 BAD85025.1 - 0.0033 17.0 0.1 0.0054 16.3 0.1 1.4 1 1 0 1 1 1 1 Propionate catabolism activator MciZ PF13072.6 BAD85025.1 - 0.033 14.0 1.3 0.074 12.9 1.3 1.5 1 0 0 1 1 1 0 Mother cell inhibitor of FtsZ PPE PF00823.19 BAD85025.1 - 0.034 14.2 0.0 0.062 13.4 0.0 1.4 1 0 0 1 1 1 0 PPE family DUF4423 PF14394.6 BAD85025.1 - 0.065 12.9 0.1 0.11 12.2 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) CoA_binding PF02629.19 BAD85025.1 - 0.092 13.4 1.1 0.27 11.9 0.1 2.2 1 1 1 2 2 2 0 CoA binding domain GST_N PF02798.20 BAD85025.1 - 0.1 13.0 0.3 11 6.4 0.0 2.3 2 0 0 2 2 2 0 Glutathione S-transferase, N-terminal domain CoA_binding_2 PF13380.6 BAD85025.1 - 0.11 13.0 0.2 4.7 7.7 0.0 2.2 1 1 1 2 2 2 0 CoA binding domain Glutaredoxin PF00462.24 BAD85025.1 - 0.12 12.6 0.1 3.5 7.9 0.0 2.6 2 0 0 2 2 2 0 Glutaredoxin ANF_receptor PF01094.28 BAD85025.1 - 0.23 10.5 0.0 0.44 9.6 0.0 1.4 1 0 0 1 1 1 0 Receptor family ligand binding region E1-E2_ATPase PF00122.20 BAD85026.1 - 2.4e-59 199.9 1.2 2.4e-59 199.9 1.2 2.1 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.26 BAD85026.1 - 7.9e-46 157.0 6.3 7.9e-46 157.0 6.3 1.8 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 BAD85026.1 - 2.7e-32 111.0 4.8 2e-15 56.9 0.3 3.4 2 0 0 2 2 2 2 Heavy-metal-associated domain Hydrolase_3 PF08282.12 BAD85026.1 - 2.2e-07 30.9 1.5 2.6e-05 24.1 0.3 2.9 2 1 1 3 3 3 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 BAD85026.1 - 2.1e-06 28.3 0.1 5.7e-06 26.9 0.1 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 BAD85026.1 - 0.00012 22.2 0.6 0.00041 20.5 0.2 2.1 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 BAD85026.1 - 0.0021 18.1 0.1 0.1 12.8 0.0 3.4 2 1 1 3 3 3 1 Haloacid dehalogenase-like hydrolase CPSase_L_D2 PF02786.17 BAD85026.1 - 0.023 14.2 0.1 0.05 13.1 0.1 1.5 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain CBS PF00571.28 BAD85026.1 - 0.055 13.9 1.0 0.27 11.7 0.2 2.5 2 0 0 2 2 2 0 CBS domain Thioredoxin PF00085.20 BAD85027.1 - 2.6e-11 43.4 0.0 3.1e-11 43.2 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 BAD85027.1 - 0.00013 22.4 0.0 0.0013 19.2 0.0 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.6 BAD85027.1 - 0.00048 20.1 0.0 0.00066 19.7 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin domain Glutaredoxin PF00462.24 BAD85027.1 - 0.004 17.3 0.0 0.0052 17.0 0.0 1.4 1 1 0 1 1 1 1 Glutaredoxin HyaE PF07449.11 BAD85027.1 - 0.0043 17.0 0.0 0.0047 16.9 0.0 1.1 1 0 0 1 1 1 1 Hydrogenase-1 expression protein HyaE Redoxin PF08534.10 BAD85027.1 - 0.011 15.4 0.0 0.014 15.1 0.0 1.3 1 1 0 1 1 1 0 Redoxin Thioredoxin_8 PF13905.6 BAD85027.1 - 0.05 13.9 0.0 0.76 10.1 0.0 2.0 1 1 1 2 2 2 0 Thioredoxin-like AhpC-TSA PF00578.21 BAD85027.1 - 0.085 12.8 0.0 0.11 12.4 0.0 1.3 1 1 0 1 1 1 0 AhpC/TSA family Nitroreductase PF00881.24 BAD85028.1 - 5.1e-36 124.3 0.0 5.8e-36 124.1 0.0 1.0 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 BAD85028.1 - 9.9e-08 31.8 0.0 0.011 15.4 0.0 2.2 2 0 0 2 2 2 2 Putative TM nitroreductase Nitroreductase PF00881.24 BAD85029.1 - 4.7e-35 121.1 0.0 5.8e-35 120.8 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 BAD85029.1 - 1.3e-08 34.7 0.1 0.0056 16.3 0.0 2.5 2 1 1 3 3 3 2 Putative TM nitroreductase DUF4079 PF13301.6 BAD85030.1 - 0.01 16.0 3.2 0.011 15.9 3.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF4079) Cytochrom_B561 PF03188.16 BAD85030.1 - 0.011 15.8 6.2 0.02 15.0 6.2 1.4 1 1 0 1 1 1 0 Eukaryotic cytochrome b561 LptF_LptG PF03739.14 BAD85030.1 - 0.12 11.2 4.5 0.13 11.1 4.5 1.0 1 0 0 1 1 1 0 Lipopolysaccharide export system permease LptF/LptG Gram_pos_anchor PF00746.21 BAD85030.1 - 0.18 11.8 0.1 0.31 11.0 0.1 1.4 1 0 0 1 1 1 0 LPXTG cell wall anchor motif SBF PF01758.16 BAD85031.1 - 3.4e-46 157.4 14.7 3.4e-46 157.4 14.7 2.2 3 0 0 3 3 3 1 Sodium Bile acid symporter family SBF_like PF13593.6 BAD85031.1 - 6.5e-11 42.1 20.5 1.3e-10 41.1 20.5 1.5 1 1 0 1 1 1 1 SBF-like CPA transporter family (DUF4137) LMWPc PF01451.21 BAD85032.1 - 3.9e-25 88.9 0.0 5.7e-25 88.4 0.0 1.2 1 0 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase AFOR_C PF01314.18 BAD85033.1 - 2.1e-97 326.6 0.0 3.4e-97 325.8 0.0 1.3 1 1 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 BAD85033.1 - 5e-69 232.2 0.1 9.9e-69 231.2 0.1 1.5 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Aldo_ket_red PF00248.21 BAD85034.1 - 9.6e-66 221.9 0.0 4.4e-64 216.5 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family AP2 PF00847.20 BAD85034.1 - 0.00034 20.8 0.1 0.00076 19.7 0.1 1.6 1 0 0 1 1 1 1 AP2 domain TBPIP PF07106.13 BAD85034.1 - 0.029 14.3 0.1 4.4 7.3 0.0 2.4 2 0 0 2 2 2 0 TBPIP/Hop2 winged helix domain CbiZ PF01955.18 BAD85035.1 - 2.6e-45 154.9 0.1 2.9e-45 154.7 0.1 1.0 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase DUF2634 PF10934.8 BAD85036.1 - 0.034 14.3 0.4 0.038 14.1 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2634) PIN PF01850.21 BAD85037.1 - 0.0085 16.6 0.1 0.017 15.6 0.1 1.5 1 1 0 1 1 1 1 PIN domain PIN_3 PF13470.6 BAD85037.1 - 0.11 13.2 0.0 0.14 12.9 0.0 1.2 1 0 0 1 1 1 0 PIN domain RHH_1 PF01402.21 BAD85038.1 - 0.0094 15.9 0.6 0.027 14.4 0.3 1.8 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family RHH_6 PF16762.5 BAD85038.1 - 0.078 13.6 0.1 0.084 13.5 0.1 1.0 1 0 0 1 1 1 0 Ribbon-helix-helix domain OrfB_IS605 PF01385.19 BAD85039.1 - 1.3e-30 106.1 0.6 2.5e-30 105.1 0.0 1.8 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.11 BAD85039.1 - 6.1e-21 74.1 0.0 1.1e-20 73.3 0.0 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain MAP65_ASE1 PF03999.12 BAD85039.1 - 0.0021 16.9 0.5 0.003 16.3 0.5 1.1 1 0 0 1 1 1 1 Microtubule associated protein (MAP65/ASE1 family) HTH_OrfB_IS605 PF12323.8 BAD85039.1 - 0.015 14.8 0.0 0.038 13.5 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain RuvX PF03652.15 BAD85039.1 - 0.042 14.2 0.0 0.11 12.8 0.0 1.7 1 1 0 1 1 1 0 Holliday junction resolvase PIN PF01850.21 BAD85040.1 - 0.02 15.4 0.0 0.022 15.2 0.0 1.1 1 0 0 1 1 1 0 PIN domain DBI_PRT PF02277.17 BAD85041.1 - 1.1e-05 24.9 0.1 1.6e-05 24.3 0.1 1.2 1 0 0 1 1 1 1 Phosphoribosyltransferase Radical_SAM PF04055.21 BAD85042.1 - 7.6e-20 71.9 0.2 1.9e-19 70.7 0.1 1.7 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 BAD85042.1 - 9.4e-07 29.2 0.0 1.6e-06 28.5 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 BAD85042.1 - 8.2e-05 22.7 0.0 0.00015 21.9 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Hydrolase PF00702.26 BAD85042.1 - 0.0075 16.6 0.0 0.058 13.7 0.0 1.9 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 BAD85042.1 - 0.16 12.3 0.0 0.23 11.8 0.0 1.4 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase Radical_SAM_C PF16199.5 BAD85042.1 - 0.17 11.9 0.3 1.4 9.0 0.0 2.4 3 0 0 3 3 3 0 Radical_SAM C-terminal domain GATase_3 PF07685.14 BAD85043.1 - 2.5e-51 174.1 0.0 3.8e-51 173.5 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.23 BAD85043.1 - 1.7e-20 73.4 0.0 2.7e-20 72.7 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 BAD85043.1 - 2e-19 70.2 0.0 2.2e-18 66.8 0.0 2.1 1 1 0 1 1 1 1 AAA domain GT-D PF08759.11 BAD85043.1 - 0.026 14.2 0.0 0.046 13.4 0.0 1.3 1 0 0 1 1 1 0 Glycosyltransferase GT-D fold TMEM131_like PF12371.8 BAD85043.1 - 0.033 14.5 0.0 0.071 13.4 0.0 1.5 1 0 0 1 1 1 0 Transmembrane protein 131-like GATase_5 PF13507.6 BAD85043.1 - 0.047 12.8 0.0 0.076 12.1 0.0 1.3 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain MobB PF03205.14 BAD85043.1 - 0.092 12.6 0.0 9.3 6.2 0.0 2.5 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Peptidase_S51 PF03575.17 BAD85043.1 - 0.19 11.3 0.1 0.4 10.3 0.0 1.5 2 0 0 2 2 2 0 Peptidase family S51 DUF4268 PF14088.6 BAD85044.1 - 1.9e-22 79.7 3.5 9.7e-22 77.4 0.1 2.9 3 0 0 3 3 3 1 Domain of unknown function (DUF4268) NucS PF01939.16 BAD85044.1 - 0.0014 18.0 0.1 0.0023 17.3 0.1 1.3 1 0 0 1 1 1 1 Endonuclease NucS YhcG_C PF06250.11 BAD85044.1 - 0.053 13.3 0.1 0.11 12.3 0.1 1.4 1 0 0 1 1 1 0 YhcG PDDEXK nuclease domain HSDR_N_2 PF13588.6 BAD85044.1 - 0.08 13.0 0.2 0.34 10.9 0.1 2.0 2 0 0 2 2 2 0 Type I restriction enzyme R protein N terminus (HSDR_N) eIF3_N PF09440.10 BAD85044.1 - 0.18 12.2 1.0 2.9 8.3 0.0 2.5 3 0 0 3 3 3 0 eIF3 subunit 6 N terminal domain Catalase-rel PF06628.12 BAD85044.1 - 0.19 11.9 0.3 0.71 10.1 0.2 2.0 2 0 0 2 2 2 0 Catalase-related immune-responsive DUF4635 PF15466.6 BAD85044.1 - 0.6 9.6 4.0 1.2 8.6 0.1 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF4635) NTP_transf_3 PF12804.7 BAD85045.1 - 2.9e-14 53.7 0.0 3.4e-14 53.5 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.19 BAD85045.1 - 0.0013 18.7 0.0 0.002 18.1 0.0 1.3 1 0 0 1 1 1 1 Cytidylyltransferase IspD PF01128.19 BAD85045.1 - 0.019 14.7 0.0 0.15 11.8 0.0 1.9 2 0 0 2 2 2 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CobS PF02654.15 BAD85046.1 - 2.8e-42 145.2 10.5 3.3e-42 145.0 10.5 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase CDP-OH_P_transf PF01066.21 BAD85046.1 - 0.078 13.8 0.4 0.078 13.8 0.4 3.0 2 1 0 2 2 2 0 CDP-alcohol phosphatidyltransferase Tuberin PF03542.16 BAD85046.1 - 0.19 10.8 0.5 0.25 10.4 0.5 1.1 1 0 0 1 1 1 0 Tuberin PgpA PF04608.13 BAD85047.1 - 8.1e-09 35.6 0.0 1e-08 35.4 0.0 1.2 1 0 0 1 1 1 1 Phosphatidylglycerophosphatase A PIN_2 PF10130.9 BAD85048.1 - 2e-19 70.1 0.0 2.3e-19 69.9 0.0 1.1 1 0 0 1 1 1 1 PIN domain PIN PF01850.21 BAD85048.1 - 0.00056 20.4 0.0 0.00074 20.0 0.0 1.1 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.6 BAD85048.1 - 0.00068 20.4 0.0 0.0009 20.0 0.0 1.2 1 0 0 1 1 1 1 PIN domain PIN_4 PF13638.6 BAD85048.1 - 0.12 12.7 0.1 0.16 12.2 0.1 1.4 1 1 0 1 1 1 0 PIN domain T3SSipB PF16535.5 BAD85049.1 - 0.03 14.8 0.0 0.035 14.6 0.0 1.1 1 0 0 1 1 1 0 Type III cell invasion protein SipB Myb_CC_LHEQLE PF14379.6 BAD85049.1 - 0.043 13.5 2.3 0.09 12.5 2.3 1.6 1 0 0 1 1 1 0 MYB-CC type transfactor, LHEQLE motif Diphthami_syn_2 PF01902.17 BAD85050.1 - 7.5e-28 97.5 0.0 8.5e-28 97.4 0.0 1.0 1 0 0 1 1 1 1 Diphthamide synthase CoA_binding PF02629.19 BAD85050.1 - 0.076 13.7 0.0 0.19 12.4 0.0 1.6 2 0 0 2 2 2 0 CoA binding domain Cas_CT1975 PF09344.10 BAD85050.1 - 0.14 11.6 0.0 0.2 11.1 0.0 1.2 1 0 0 1 1 1 0 CT1975-like protein Lar_restr_allev PF14354.6 BAD85051.1 - 0.00015 22.1 0.3 0.00021 21.6 0.3 1.3 1 1 0 1 1 1 1 Restriction alleviation protein Lar TF_Zn_Ribbon PF08271.12 BAD85051.1 - 0.03 13.8 0.8 3.4 7.3 0.1 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding zf-TFIIB PF13453.6 BAD85051.1 - 0.037 13.4 0.1 0.28 10.5 0.0 2.1 2 0 0 2 2 2 0 Transcription factor zinc-finger Zn-ribbon_8 PF09723.10 BAD85051.1 - 0.11 12.6 1.0 3.5 7.8 0.2 2.2 2 0 0 2 2 2 0 Zinc ribbon domain zf_UBZ PF18439.1 BAD85051.1 - 0.23 11.1 0.6 3.1 7.5 0.0 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Zn_ribbon_SprT PF17283.2 BAD85051.1 - 0.42 10.6 2.5 8.1 6.5 0.3 2.3 2 0 0 2 2 2 0 SprT-like zinc ribbon domain YhfH PF14149.6 BAD85051.1 - 0.57 10.2 2.9 8.4 6.5 1.3 2.3 2 0 0 2 2 2 0 YhfH-like protein CobD_Cbib PF03186.13 BAD85052.1 - 6.3e-84 281.4 0.0 8.9e-84 281.0 0.0 1.2 1 0 0 1 1 1 1 CobD/Cbib protein ECF_trnsprt PF12822.7 BAD85052.1 - 0.001 19.2 0.5 0.002 18.3 0.1 1.8 2 1 0 2 2 2 1 ECF transporter, substrate-specific component 7tm_7 PF08395.12 BAD85052.1 - 0.017 14.4 4.2 0.021 14.0 1.8 2.0 2 0 0 2 2 2 0 7tm Chemosensory receptor Aminotran_1_2 PF00155.21 BAD85053.1 - 9.2e-34 117.2 0.0 1.1e-33 116.9 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 BAD85053.1 - 0.038 13.3 0.0 0.054 12.8 0.0 1.1 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family Peripla_BP_2 PF01497.18 BAD85054.1 - 1.1e-39 136.5 0.0 1.4e-39 136.1 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Alpha_GJ PF03229.13 BAD85054.1 - 0.58 10.7 5.5 1.7 9.2 3.5 2.0 2 0 0 2 2 2 0 Alphavirus glycoprotein J SSP160 PF06933.11 BAD85054.1 - 3.1 5.9 8.5 4.6 5.3 8.5 1.2 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 PhosphMutase PF10143.9 BAD85055.1 - 4.4e-55 186.1 0.0 9.1e-55 185.1 0.0 1.5 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.18 BAD85055.1 - 4.4e-52 176.9 0.0 5.2e-52 176.7 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.22 BAD85055.1 - 1.4e-09 38.0 0.0 4.9e-08 32.9 0.0 2.1 2 0 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.23 BAD85055.1 - 0.00033 20.2 0.0 0.35 10.2 0.0 2.2 2 0 0 2 2 2 2 Sulfatase DUF2384 PF09722.10 BAD85055.1 - 0.17 11.9 0.0 0.42 10.7 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2384) Na_Ca_ex PF01699.24 BAD85056.1 - 2.6e-42 144.3 32.0 2e-21 76.5 11.3 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein MttA_Hcf106 PF02416.16 BAD85056.1 - 1.9 7.9 6.8 0.29 10.5 0.7 2.9 2 1 0 2 2 2 0 mttA/Hcf106 family HIT PF01230.23 BAD85057.1 - 3.9e-15 56.4 0.0 6e-15 55.8 0.0 1.3 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 BAD85057.1 - 8.3e-08 32.7 0.0 1.7e-07 31.7 0.0 1.5 2 0 0 2 2 2 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.15 BAD85057.1 - 0.00013 21.8 0.0 0.00019 21.3 0.0 1.3 1 0 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 DUF3211 PF11485.8 BAD85058.1 - 0.0029 17.8 0.0 0.0041 17.3 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3211) TOBE PF03459.17 BAD85058.1 - 0.035 14.4 0.1 1.2 9.5 0.0 2.6 2 0 0 2 2 2 0 TOBE domain Thy1 PF02511.15 BAD85059.1 - 2e-62 210.3 0.3 2.4e-62 210.1 0.3 1.0 1 0 0 1 1 1 1 Thymidylate synthase complementing protein OTCace PF00185.24 BAD85060.1 - 8e-67 224.2 0.1 1.1e-66 223.7 0.1 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.21 BAD85060.1 - 2.7e-51 173.5 0.0 7e-51 172.1 0.0 1.7 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Methyltr_RsmB-F PF01189.17 BAD85061.1 - 4.1e-57 193.1 0.0 5.2e-57 192.7 0.0 1.1 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltr_RsmF_N PF17125.5 BAD85061.1 - 6e-21 74.8 0.0 1.2e-20 73.8 0.0 1.4 1 0 0 1 1 1 1 N-terminal domain of 16S rRNA methyltransferase RsmF Methyltransf_31 PF13847.6 BAD85061.1 - 4.2e-07 29.9 0.0 5.7e-07 29.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.19 BAD85061.1 - 1e-06 29.0 0.0 1.4e-06 28.5 0.0 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase POR PF01558.18 BAD85061.1 - 0.049 13.7 0.0 0.13 12.3 0.0 1.7 2 0 0 2 2 2 0 Pyruvate ferredoxin/flavodoxin oxidoreductase Metallophos PF00149.28 BAD85063.1 - 1.2e-06 29.2 0.0 1.5e-06 28.9 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 BAD85063.1 - 6.1e-06 26.5 0.0 8.5e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Sacchrp_dh_C PF16653.5 BAD85064.1 - 4.5e-32 112.2 0.0 5.6e-32 111.9 0.0 1.1 1 0 0 1 1 1 1 Saccharopine dehydrogenase C-terminal domain Sacchrp_dh_NADP PF03435.18 BAD85064.1 - 1.1e-17 64.5 0.0 1.5e-17 64.0 0.0 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain AlaDh_PNT_C PF01262.21 BAD85064.1 - 6.9e-05 22.2 0.0 0.00011 21.6 0.0 1.2 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain GFO_IDH_MocA PF01408.22 BAD85064.1 - 0.0076 17.1 0.0 0.011 16.5 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold TrkA_N PF02254.18 BAD85064.1 - 0.018 15.3 0.1 0.033 14.4 0.1 1.5 1 0 0 1 1 1 0 TrkA-N domain DapB_N PF01113.20 BAD85064.1 - 0.023 14.8 0.1 0.039 14.1 0.1 1.4 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus CoA_binding PF02629.19 BAD85064.1 - 0.023 15.4 0.1 0.048 14.3 0.1 1.5 1 0 0 1 1 1 0 CoA binding domain Shikimate_DH PF01488.20 BAD85064.1 - 0.037 14.1 0.0 0.062 13.4 0.0 1.3 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase 2-Hacid_dh_C PF02826.19 BAD85064.1 - 0.096 12.0 0.0 0.15 11.4 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EMG1 PF03587.14 BAD85065.1 - 1.4e-50 171.6 0.0 1.6e-50 171.5 0.0 1.0 1 0 0 1 1 1 1 EMG1/NEP1 methyltransferase eIF-5a PF01287.20 BAD85067.1 - 2.8e-12 46.5 0.5 4.3e-12 46.0 0.5 1.3 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.12 BAD85067.1 - 3e-05 24.0 0.1 6.3e-05 22.9 0.1 1.7 1 0 0 1 1 1 1 Elongation factor P (EF-P) KOW-like domain EFP PF01132.20 BAD85067.1 - 0.012 15.7 0.3 0.023 14.7 0.3 1.4 1 0 0 1 1 1 0 Elongation factor P (EF-P) OB domain Usp PF00582.26 BAD85068.1 - 6e-05 23.6 0.2 7.6e-05 23.3 0.2 1.1 1 0 0 1 1 1 1 Universal stress protein family CitMHS PF03600.16 BAD85069.1 - 6e-57 193.1 21.8 6e-57 193.1 21.8 1.7 1 1 1 2 2 2 1 Citrate transporter Na_sulph_symp PF00939.19 BAD85069.1 - 9.7e-27 94.1 28.0 3.8e-14 52.6 7.5 2.0 1 1 1 2 2 2 2 Sodium:sulfate symporter transmembrane region ArsB PF02040.15 BAD85069.1 - 7.3e-22 78.3 24.0 9e-22 78.0 24.0 1.0 1 0 0 1 1 1 1 Arsenical pump membrane protein NhaB PF06450.12 BAD85069.1 - 9.6e-10 37.9 19.4 1.7e-09 37.1 6.5 2.7 2 1 0 2 2 2 2 Bacterial Na+/H+ antiporter B (NhaB) DctM PF06808.12 BAD85069.1 - 0.0002 20.3 27.2 0.00061 18.7 12.1 2.4 1 1 1 2 2 2 2 Tripartite ATP-independent periplasmic transporter, DctM component Usp PF00582.26 BAD85070.1 - 2.5e-20 73.5 0.4 2.8e-20 73.2 0.4 1.0 1 0 0 1 1 1 1 Universal stress protein family DUF5603 PF18231.1 BAD85070.1 - 0.023 15.0 0.3 0.042 14.2 0.1 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF5603) Arginase PF00491.21 BAD85071.1 - 4.3e-62 210.1 0.0 5.1e-62 209.9 0.0 1.0 1 0 0 1 1 1 1 Arginase family Radical_SAM PF04055.21 BAD85071.1 - 0.033 14.6 0.0 0.067 13.6 0.0 1.6 2 0 0 2 2 2 0 Radical SAM superfamily CBS PF00571.28 BAD85072.1 - 1.5e-12 47.8 6.7 1.1e-05 25.8 0.2 2.5 2 1 0 2 2 2 2 CBS domain NYN PF01936.18 BAD85072.1 - 0.16 12.4 0.0 0.26 11.8 0.0 1.3 1 0 0 1 1 1 0 NYN domain Na_H_Exchanger PF00999.21 BAD85073.1 - 6.3e-45 153.6 41.6 8.1e-45 153.2 41.6 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Voltage_CLC PF00654.20 BAD85075.1 - 5.2e-90 302.2 43.2 5.2e-90 302.2 43.2 2.0 2 0 0 2 2 2 2 Voltage gated chloride channel CBS PF00571.28 BAD85075.1 - 8.3e-22 77.4 0.3 7.4e-12 45.5 0.3 2.5 2 0 0 2 2 2 2 CBS domain PHP_C PF13263.6 BAD85076.1 - 5.8e-05 22.8 0.0 0.00016 21.3 0.0 1.8 1 0 0 1 1 1 1 PHP-associated PHP PF02811.19 BAD85076.1 - 5.9e-05 23.4 0.0 0.00014 22.3 0.0 1.7 1 1 0 1 1 1 1 PHP domain zinc_ribbon_4 PF13717.6 BAD85076.1 - 0.023 14.6 1.6 0.055 13.4 1.6 1.7 1 0 0 1 1 1 0 zinc-ribbon domain HypA PF01155.19 BAD85076.1 - 0.051 13.6 0.4 0.15 12.1 0.1 1.9 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF4379 PF14311.6 BAD85076.1 - 0.11 12.9 0.4 0.29 11.5 0.4 1.7 1 0 0 1 1 1 0 Probable Zinc-ribbon domain zf-C3HC4_3 PF13920.6 BAD85076.1 - 0.11 12.3 0.6 0.18 11.7 0.6 1.3 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) SPOUT_MTase_2 PF14419.6 BAD85076.1 - 0.14 11.5 0.0 0.52 9.7 0.0 1.9 2 0 0 2 2 2 0 AF2226-like SPOUT RNA Methylase fused to THUMP NAD_binding_4 PF07993.12 BAD85076.1 - 0.14 11.3 0.0 0.21 10.7 0.0 1.3 1 0 0 1 1 1 0 Male sterility protein zinc_ribbon_10 PF10058.9 BAD85076.1 - 0.36 10.6 1.3 0.77 9.5 1.3 1.5 1 0 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein MazE_antitoxin PF04014.18 BAD85077.1 - 1.1e-10 41.1 0.4 1.1e-10 41.1 0.4 1.6 2 0 0 2 2 2 1 Antidote-toxin recognition MazE, bacterial antitoxin PrlF_antitoxin PF15937.5 BAD85077.1 - 0.0041 17.5 0.0 0.0048 17.3 0.0 1.3 1 1 0 1 1 1 1 prlF antitoxin for toxin YhaV_toxin DUF3606 PF12244.8 BAD85077.1 - 0.0083 16.0 0.2 0.021 14.7 0.2 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF3606) Thump_like PF18096.1 BAD85077.1 - 0.022 14.7 0.0 0.067 13.1 0.0 1.8 1 1 0 1 1 1 0 THUMP domain-like DUF746 PF05344.11 BAD85077.1 - 0.041 13.7 0.0 0.072 12.9 0.0 1.3 1 0 0 1 1 1 0 Domain of Unknown Function (DUF746) RuvA_C PF07499.13 BAD85077.1 - 0.086 13.3 0.4 1.1 9.7 0.1 2.1 2 0 0 2 2 2 0 RuvA, C-terminal domain PIN_3 PF13470.6 BAD85078.1 - 3.6e-12 47.1 0.0 4.8e-12 46.7 0.0 1.2 1 0 0 1 1 1 1 PIN domain PIN PF01850.21 BAD85078.1 - 2.3e-06 28.1 0.0 1e-05 26.0 0.0 1.8 1 1 0 1 1 1 1 PIN domain PIN_2 PF10130.9 BAD85078.1 - 0.0094 16.2 0.0 0.16 12.2 0.0 2.1 1 1 0 1 1 1 1 PIN domain PIN_8 PF18476.1 BAD85078.1 - 0.094 12.6 0.0 0.17 11.7 0.0 1.4 1 1 0 1 1 1 0 PIN like domain AIRS PF00586.24 BAD85079.1 - 8.1e-18 64.9 0.1 1.4e-17 64.1 0.1 1.4 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 BAD85079.1 - 1.5e-09 38.2 0.0 2.2e-09 37.6 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain Glycos_transf_1 PF00534.20 BAD85080.1 - 8.7e-42 142.6 0.0 1.3e-41 142.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 BAD85080.1 - 3.5e-33 114.9 0.0 5.7e-33 114.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 BAD85080.1 - 2.3e-25 89.6 0.8 4.3e-25 88.7 0.8 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 BAD85080.1 - 3.1e-15 57.0 0.0 6.5e-15 55.9 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 BAD85080.1 - 6.4e-10 39.2 0.1 1.5e-09 38.0 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.6 BAD85080.1 - 9.5e-08 32.3 0.0 3.7e-07 30.5 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.11 BAD85080.1 - 2.8e-07 30.5 0.0 0.00086 19.1 0.0 2.2 1 1 1 2 2 2 2 Starch synthase catalytic domain PIGA PF08288.12 BAD85080.1 - 0.00031 21.3 0.0 0.00075 20.0 0.0 1.7 1 0 0 1 1 1 1 PIGA (GPI anchor biosynthesis) Glyco_trans_4_5 PF16994.5 BAD85080.1 - 0.0012 18.5 0.0 0.0025 17.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyl-transferase family 4 Polysacc_deac_1 PF01522.21 BAD85081.1 - 1.4e-15 57.3 0.0 2e-15 56.8 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide deacetylase DUF2334 PF10096.9 BAD85081.1 - 0.0044 16.7 0.0 0.0066 16.1 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2334) DUF3473 PF11959.8 BAD85081.1 - 0.16 12.0 0.6 1.1 9.3 0.6 2.2 1 1 0 1 1 1 0 Domain of unknown function (DUF3473) Radical_SAM PF04055.21 BAD85082.1 - 1.8e-23 83.8 0.9 2.3e-22 80.2 0.1 2.7 3 0 0 3 3 3 1 Radical SAM superfamily Fer4_12 PF13353.6 BAD85082.1 - 1.2e-07 32.1 0.1 2.8e-07 30.9 0.1 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain DiS_P_DiS PF06750.13 BAD85082.1 - 0.032 14.3 1.6 0.087 12.9 0.0 2.2 2 0 0 2 2 2 0 Bacterial Peptidase A24 N-terminal domain DBD_Tnp_Hermes PF10683.9 BAD85082.1 - 0.12 12.0 0.0 0.24 11.1 0.0 1.5 1 0 0 1 1 1 0 Hermes transposase DNA-binding domain ComZ PF10815.8 BAD85083.1 - 0.022 14.7 0.0 1.7 8.7 0.0 2.5 2 0 0 2 2 2 0 ComZ S_layer_N PF05123.12 BAD85084.1 - 1.5e-85 287.5 16.3 1.5e-85 287.5 16.3 3.1 2 1 1 3 3 3 1 S-layer like family, N-terminal region S_layer_C PF05124.12 BAD85084.1 - 6.4e-75 251.9 4.5 6.4e-75 251.9 4.5 3.2 2 1 0 3 3 3 1 S-layer like family, C-terminal region BMC PF00936.19 BAD85084.1 - 6.1 6.9 7.9 0.6 10.1 0.1 3.2 4 0 0 4 4 4 0 BMC domain Radical_SAM PF04055.21 BAD85086.1 - 3.1e-27 96.0 0.1 2e-26 93.4 0.0 2.3 3 0 0 3 3 3 1 Radical SAM superfamily HHH_3 PF12836.7 BAD85086.1 - 3.2e-07 30.5 0.0 1.4e-06 28.4 0.0 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.6 BAD85086.1 - 0.0025 18.4 0.0 0.013 16.0 0.0 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix domain 5_3_exonuc PF01367.20 BAD85086.1 - 0.14 12.8 0.1 1.5 9.5 0.0 2.4 2 0 0 2 2 2 0 5'-3' exonuclease, C-terminal SAM fold Nic96 PF04097.14 BAD85087.1 - 0.0034 15.9 0.3 0.0039 15.7 0.3 1.2 1 0 0 1 1 1 1 Nup93/Nic96 DUF2383 PF09537.10 BAD85087.1 - 0.0084 16.4 1.0 0.02 15.2 0.2 2.0 3 0 0 3 3 3 1 Domain of unknown function (DUF2383) Spidroin_MaSp PF11260.8 BAD85087.1 - 0.087 13.1 0.4 19 5.7 0.1 2.4 2 0 0 2 2 2 0 Major ampullate spidroin 1 and 2 DUF3231 PF11553.8 BAD85087.1 - 0.11 12.1 0.1 0.17 11.5 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3231) HEPN PF05168.14 BAD85087.1 - 0.15 12.2 1.8 0.31 11.2 0.3 2.2 2 1 0 2 2 2 0 HEPN domain ZYG-11_interact PF05884.12 BAD85087.1 - 0.24 10.8 0.1 1.4 8.3 0.1 1.8 1 1 1 2 2 2 0 Interactor of ZYG-11 RrnaAD PF00398.20 BAD85088.1 - 1.8e-53 181.3 0.0 2e-53 181.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_25 PF13649.6 BAD85088.1 - 5.1e-05 23.9 0.0 0.00011 22.8 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 BAD85088.1 - 0.0011 18.6 0.0 0.0016 18.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_11 PF08241.12 BAD85088.1 - 0.0013 19.3 0.0 0.0041 17.7 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 BAD85088.1 - 0.022 14.6 0.0 0.031 14.1 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain DUF655 PF04919.12 BAD85089.1 - 1.8e-69 233.3 0.3 2.1e-69 233.1 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_6 PF14579.6 BAD85089.1 - 2.2e-05 24.6 0.0 5.5e-05 23.3 0.0 1.7 1 1 0 1 1 1 1 Helix-hairpin-helix motif HHH_3 PF12836.7 BAD85089.1 - 0.00015 22.0 0.0 0.00055 20.1 0.0 2.0 1 1 1 2 2 2 1 Helix-hairpin-helix motif DGCR6 PF07324.11 BAD85089.1 - 0.14 11.7 0.2 1.2 8.7 0.0 2.0 2 0 0 2 2 2 0 DiGeorge syndrome critical region 6 (DGCR6) protein RNA_pol_Rpb4 PF03874.16 BAD85090.1 - 3.2e-06 27.5 0.6 5.4e-06 26.7 0.6 1.3 1 1 0 1 1 1 1 RNA polymerase Rpb4 Borrelia_REV PF03978.13 BAD85090.1 - 0.093 12.7 0.1 0.14 12.1 0.1 1.3 1 1 0 1 1 1 0 Borrelia burgdorferi REV protein APAF1_C PF17908.1 BAD85090.1 - 0.12 12.3 0.0 0.18 11.8 0.0 1.3 1 0 0 1 1 1 0 APAF-1 helical domain Ribosomal_L21e PF01157.18 BAD85091.1 - 2.1e-35 120.6 1.5 2.4e-35 120.4 1.5 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e THUMP PF02926.17 BAD85092.1 - 3.3e-13 49.9 0.7 3.3e-13 49.9 0.7 2.3 3 0 0 3 3 3 1 THUMP domain Ribosomal_L12 PF00542.19 BAD85092.1 - 0.1 13.0 0.2 0.38 11.1 0.2 1.9 1 0 0 1 1 1 0 Ribosomal protein L7/L12 C-terminal domain HTH_5 PF01022.20 BAD85093.1 - 0.01 15.7 0.0 0.023 14.6 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HypA PF01155.19 BAD85093.1 - 0.021 14.8 0.9 0.023 14.7 0.9 1.3 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 BAD85093.1 - 0.021 14.9 2.0 0.042 14.0 2.0 1.4 1 0 0 1 1 1 0 Zinc ribbon domain DZR PF12773.7 BAD85093.1 - 0.022 14.8 0.1 0.032 14.3 0.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon HTH_32 PF13565.6 BAD85093.1 - 0.028 15.0 0.0 0.056 14.1 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain UPF0547 PF10571.9 BAD85093.1 - 0.17 12.0 0.3 0.17 12.0 0.3 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zinc_ribbon_4 PF13717.6 BAD85093.1 - 0.35 10.8 3.6 10 6.1 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Rubredoxin_2 PF18073.1 BAD85093.1 - 0.78 9.5 5.3 3.1 7.6 0.1 2.1 2 0 0 2 2 2 0 Rubredoxin metal binding domain HalOD2 PF18547.1 BAD85093.1 - 1 9.3 3.9 5.7 6.9 0.7 2.2 2 0 0 2 2 2 0 Halobacterial output domain 2 Peptidase_U4 PF03419.13 BAD85094.1 - 1.2 8.3 10.3 8.6 5.6 10.3 1.9 1 1 0 1 1 1 0 Sporulation factor SpoIIGA Endonuclease_5 PF04493.14 BAD85095.1 - 3.9e-43 147.5 0.0 2.8e-35 121.8 0.0 2.0 1 1 1 2 2 2 2 Endonuclease V Translin PF01997.16 BAD85096.1 - 2.5e-13 50.5 0.5 2.7e-11 43.9 0.5 2.1 1 1 0 1 1 1 1 Translin family Nup35_RRM_2 PF14605.6 BAD85096.1 - 0.16 12.0 0.0 0.28 11.2 0.0 1.4 1 0 0 1 1 1 0 Nup53/35/40-type RNA recognition motif FliS PF02561.14 BAD85096.1 - 0.18 12.1 3.0 0.42 10.9 0.2 2.7 2 2 1 3 3 3 0 Flagellar protein FliS Asparaginase PF00710.20 BAD85097.1 - 2.1e-62 210.1 0.3 5.8e-62 208.6 0.2 1.7 2 0 0 2 2 2 1 Asparaginase, N-terminal Asparaginase_C PF17763.1 BAD85097.1 - 3.6e-37 127.1 0.1 2.4e-36 124.4 0.0 2.1 2 0 0 2 2 2 1 Glutaminase/Asparaginase C-terminal domain GatD_N PF18195.1 BAD85097.1 - 3.3e-20 71.2 0.4 7.4e-20 70.0 0.4 1.6 1 0 0 1 1 1 1 GatD N-terminal domain DUF104 PF01954.16 BAD85098.1 - 3e-19 69.2 4.1 3.4e-19 69.0 4.1 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF104 Phenyl_P_gamma PF09662.10 BAD85098.1 - 0.01 16.0 0.0 0.012 15.7 0.0 1.2 1 0 0 1 1 1 0 Phenylphosphate carboxylase gamma subunit (Phenyl_P_gamma) Glyco_tranf_2_5 PF13712.6 BAD85098.1 - 0.038 13.7 0.0 0.04 13.6 0.0 1.0 1 0 0 1 1 1 0 Glycosyltransferase like family PIN PF01850.21 BAD85099.1 - 1.5e-20 73.9 0.1 2.5e-20 73.2 0.1 1.3 1 1 0 1 1 1 1 PIN domain PIN_3 PF13470.6 BAD85099.1 - 0.00024 21.8 0.0 0.00039 21.2 0.0 1.4 1 1 0 1 1 1 1 PIN domain Com_YlbF PF06133.11 BAD85099.1 - 0.04 14.5 0.1 0.061 13.9 0.1 1.3 1 0 0 1 1 1 0 Control of competence regulator ComK, YlbF/YmcA GatB_N PF02934.15 BAD85100.1 - 9.7e-65 218.7 0.0 1.6e-64 217.9 0.0 1.4 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 BAD85100.1 - 2.6e-27 95.5 6.6 2.6e-27 95.5 6.6 2.2 2 0 0 2 2 2 1 GatB domain GAD PF02938.14 BAD85100.1 - 8.7e-18 64.4 1.8 1.8e-17 63.3 0.2 2.4 2 0 0 2 2 2 1 GAD domain YqeY PF09424.10 BAD85100.1 - 2e-09 37.7 2.9 2e-09 37.7 2.9 2.9 3 1 0 3 3 3 1 Yqey-like protein Ldh_1_C PF02866.18 BAD85100.1 - 0.017 15.1 0.3 0.042 13.8 0.3 1.7 1 0 0 1 1 1 0 lactate/malate dehydrogenase, alpha/beta C-terminal domain NAD_Gly3P_dh_N PF01210.23 BAD85100.1 - 0.18 11.8 1.3 0.46 10.5 0.7 2.0 1 1 1 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus RecX PF02631.16 BAD85100.1 - 0.96 9.9 6.1 0.84 10.1 0.1 3.5 3 1 0 4 4 4 0 RecX family FumaraseC_C PF10415.9 BAD85100.1 - 2 8.9 5.0 1.8 9.1 1.7 2.7 2 1 0 2 2 2 0 Fumarase C C-terminus DUF2157 PF09925.9 BAD85101.1 - 0.00028 20.7 0.0 0.00036 20.3 0.0 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2157) ATPase_gene1 PF09527.10 BAD85101.1 - 0.026 14.7 6.2 0.037 14.2 6.2 1.2 1 0 0 1 1 1 0 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter Gram_pos_anchor PF00746.21 BAD85101.1 - 0.065 13.2 4.9 0.54 10.2 0.2 2.3 2 0 0 2 2 2 0 LPXTG cell wall anchor motif DUF4784 PF16023.5 BAD85101.1 - 0.2 10.6 0.0 0.24 10.3 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4784) HMG-CoA_red PF00368.18 BAD85103.1 - 5.3e-139 463.3 0.5 6e-139 463.1 0.5 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase CbiA PF01656.23 BAD85104.1 - 6.7e-19 68.2 0.0 9.1e-19 67.8 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 BAD85104.1 - 3.8e-15 56.3 0.0 1.5e-14 54.3 0.0 1.8 1 1 1 2 2 2 1 AAA domain ParA PF10609.9 BAD85104.1 - 1.2e-12 47.9 0.0 1.8e-11 44.0 0.0 2.1 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase Fer4_NifH PF00142.18 BAD85104.1 - 8.3e-10 38.6 0.1 0.00086 18.8 0.0 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CBP_BcsQ PF06564.12 BAD85104.1 - 2e-08 34.0 0.0 6.7e-08 32.3 0.0 1.8 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ ArsA_ATPase PF02374.15 BAD85104.1 - 1.2e-05 24.7 0.2 2.4e-05 23.7 0.2 1.7 1 1 0 1 1 1 1 Anion-transporting ATPase SRP54 PF00448.22 BAD85104.1 - 0.0001 22.0 0.3 0.00026 20.7 0.1 1.7 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain APS_kinase PF01583.20 BAD85104.1 - 0.0008 19.3 0.2 0.0015 18.5 0.0 1.5 2 0 0 2 2 1 1 Adenylylsulphate kinase AAA_26 PF13500.6 BAD85104.1 - 0.00097 19.0 1.8 0.011 15.6 0.1 2.2 2 0 0 2 2 2 1 AAA domain KTI12 PF08433.10 BAD85104.1 - 0.0018 17.8 0.0 0.0031 17.0 0.0 1.4 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_18 PF13238.6 BAD85104.1 - 0.0047 17.5 0.0 0.01 16.3 0.0 1.6 2 0 0 2 2 1 1 AAA domain GTP_EFTU PF00009.27 BAD85104.1 - 0.0087 15.6 0.3 1.7 8.1 0.0 2.1 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain Zeta_toxin PF06414.12 BAD85104.1 - 0.011 15.0 0.1 0.026 13.8 0.0 1.5 2 0 0 2 2 2 0 Zeta toxin AAA_28 PF13521.6 BAD85104.1 - 0.012 15.8 0.0 0.026 14.8 0.0 1.5 2 0 0 2 2 1 0 AAA domain NB-ARC PF00931.22 BAD85104.1 - 0.026 13.7 0.9 0.44 9.7 0.2 2.1 2 0 0 2 2 2 0 NB-ARC domain AAA_30 PF13604.6 BAD85104.1 - 0.027 14.2 0.3 0.04 13.6 0.3 1.2 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 BAD85104.1 - 0.027 14.0 0.2 0.06 12.9 0.2 1.6 1 0 0 1 1 1 0 AAA domain DUF1611 PF07755.11 BAD85104.1 - 0.028 13.7 0.2 0.25 10.6 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1611_C) P-loop domain MipZ PF09140.11 BAD85104.1 - 0.039 13.2 0.1 0.079 12.2 0.0 1.5 2 0 0 2 2 2 0 ATPase MipZ VirC1 PF07015.11 BAD85104.1 - 0.049 12.9 0.0 0.099 11.9 0.0 1.5 1 0 0 1 1 1 0 VirC1 protein NTPase_1 PF03266.15 BAD85104.1 - 0.051 13.5 1.1 0.075 12.9 0.2 1.7 2 0 0 2 2 2 0 NTPase PRK PF00485.18 BAD85104.1 - 0.06 13.1 0.0 0.1 12.3 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family T2SSE PF00437.20 BAD85104.1 - 0.06 12.4 0.2 0.093 11.8 0.2 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_24 PF13479.6 BAD85104.1 - 0.067 12.9 0.1 0.1 12.3 0.1 1.6 1 1 0 1 1 1 0 AAA domain MeaB PF03308.16 BAD85104.1 - 0.079 11.9 0.1 0.13 11.2 0.1 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_22 PF13401.6 BAD85104.1 - 0.095 13.0 0.0 0.23 11.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.17 BAD85104.1 - 0.13 12.0 0.4 0.35 10.6 0.1 1.8 2 1 0 2 2 2 0 Conserved hypothetical ATP binding protein DUF2075 PF09848.9 BAD85104.1 - 0.22 10.7 0.1 0.29 10.3 0.1 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_16 PF13191.6 BAD85104.1 - 0.22 11.9 0.0 0.31 11.4 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain ADH_N PF08240.12 BAD85105.1 - 1.5e-36 124.6 2.0 2.6e-36 123.8 1.7 1.5 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 BAD85105.1 - 1e-28 99.9 0.0 2.1e-28 98.9 0.0 1.6 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 BAD85105.1 - 6.4e-11 42.1 0.0 1e-10 41.5 0.0 1.3 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_zinc_N_2 PF13602.6 BAD85105.1 - 3.4e-07 31.4 0.0 6.1e-07 30.6 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N_2 PF16884.5 BAD85105.1 - 0.0089 15.9 0.0 0.019 14.8 0.0 1.5 1 0 0 1 1 1 1 N-terminal domain of oxidoreductase UPF0175 PF03683.13 BAD85106.1 - 2.2e-27 94.5 0.1 2.7e-27 94.3 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) DUF3368 PF11848.8 BAD85107.1 - 2.2e-16 59.3 0.6 4.9e-16 58.2 0.6 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF3368) DUF5488 PF17590.2 BAD85109.1 - 0.05 13.4 0.0 0.073 12.8 0.0 1.4 1 1 0 1 1 1 0 Family of unknown function (DUF5488) tRNA-synt_2d PF01409.20 BAD85110.1 - 5.4e-83 278.2 0.0 7.1e-83 277.8 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA_synthFbeta PF17759.1 BAD85110.1 - 8.6e-06 25.3 0.0 0.021 14.2 0.0 2.3 2 0 0 2 2 2 2 Phenylalanyl tRNA synthetase beta chain CLM domain tRNA-synt_2 PF00152.20 BAD85110.1 - 0.00015 20.9 0.0 0.061 12.4 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class II (D, K and N) MarR PF01047.22 BAD85110.1 - 0.00059 19.7 0.4 0.31 11.0 0.1 3.7 4 0 0 4 4 4 1 MarR family TrmB PF01978.19 BAD85110.1 - 0.0035 17.2 5.4 0.0074 16.2 0.9 3.6 4 0 0 4 4 4 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 BAD85110.1 - 0.028 14.9 3.3 0.92 10.1 0.4 3.6 3 1 0 3 3 3 0 Winged helix DNA-binding domain MarR_2 PF12802.7 BAD85110.1 - 0.1 12.5 0.7 1.3 8.9 0.3 2.8 3 0 0 3 3 3 0 MarR family TFIIE_alpha PF02002.17 BAD85110.1 - 1.3 8.9 6.8 0.31 10.9 1.3 2.6 2 0 0 2 2 2 0 TFIIE alpha subunit DUF2283 PF10049.9 BAD85111.1 - 8.8e-17 61.1 0.2 1.4e-16 60.4 0.2 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2283) YycI PF09648.10 BAD85111.1 - 0.072 12.7 0.0 0.087 12.4 0.0 1.1 1 0 0 1 1 1 0 YycH protein HTH_19 PF12844.7 BAD85112.1 - 0.033 14.2 0.2 0.058 13.4 0.2 1.4 1 1 0 1 1 1 0 Helix-turn-helix domain PIN_2 PF10130.9 BAD85113.1 - 2e-23 83.1 0.0 2.4e-23 82.8 0.0 1.0 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.6 BAD85113.1 - 9.6e-06 26.3 0.0 1.6e-05 25.7 0.0 1.3 1 1 0 1 1 1 1 PIN domain PIN PF01850.21 BAD85113.1 - 0.0011 19.4 0.4 0.0032 18.0 0.4 1.7 1 1 0 1 1 1 1 PIN domain PIN_12 PF16289.5 BAD85113.1 - 0.13 12.8 0.0 0.16 12.5 0.0 1.3 1 0 0 1 1 1 0 PIN domain tRNA_synthFbeta PF17759.1 BAD85114.1 - 3.3e-49 167.2 0.0 8.2e-49 165.9 0.0 1.7 1 1 1 2 2 2 1 Phenylalanyl tRNA synthetase beta chain CLM domain B3_4 PF03483.17 BAD85114.1 - 9.6e-17 61.2 0.0 1.5e-16 60.6 0.0 1.3 1 0 0 1 1 1 1 B3/4 domain B5 PF03484.15 BAD85114.1 - 2.7e-14 53.2 3.1 1.6e-13 50.8 0.6 2.9 3 1 0 3 3 3 1 tRNA synthetase B5 domain PhetRS_B1 PF18262.1 BAD85114.1 - 4.5e-09 36.4 0.1 3.6e-07 30.3 0.0 3.1 2 0 0 2 2 2 1 Phe-tRNA synthetase beta subunit B1 domain tRNA-synt_2d PF01409.20 BAD85114.1 - 3.1e-05 23.6 0.0 0.00021 20.8 0.0 2.1 1 1 1 2 2 2 1 tRNA synthetases class II core domain (F) PseudoU_synth_1 PF01416.20 BAD85116.1 - 2.5e-28 98.7 0.0 2.1e-23 82.9 0.0 2.1 2 0 0 2 2 2 2 tRNA pseudouridine synthase ResIII PF04851.15 BAD85117.1 - 7.7e-18 65.1 0.0 2.2e-17 63.6 0.0 1.8 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 BAD85117.1 - 1.8e-12 47.5 0.1 7.8e-12 45.5 0.0 2.1 3 0 0 3 3 3 1 Helicase conserved C-terminal domain SWI2_SNF2 PF18766.1 BAD85117.1 - 2.8e-07 30.5 0.0 9e-07 28.8 0.0 1.8 1 1 0 1 1 1 1 SWI2/SNF2 ATPase DEAD PF00270.29 BAD85117.1 - 1.2e-05 25.2 0.7 0.00013 21.7 0.1 2.6 2 1 0 2 2 2 1 DEAD/DEAH box helicase ERCC3_RAD25_C PF16203.5 BAD85117.1 - 0.012 14.9 0.0 0.022 14.0 0.0 1.5 1 0 0 1 1 1 0 ERCC3/RAD25/XPB C-terminal helicase DUF2075 PF09848.9 BAD85117.1 - 0.033 13.4 0.0 0.057 12.7 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) DUF1676 PF07898.13 BAD85117.1 - 0.046 13.8 0.0 0.081 13.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1676) UbiD PF01977.16 BAD85118.1 - 8.4e-102 341.0 0.4 9.9e-102 340.8 0.4 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase HTH_46 PF15977.5 BAD85119.1 - 0.0083 16.1 0.3 0.042 13.9 0.2 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix DNA binding LexA_DNA_bind PF01726.16 BAD85119.1 - 0.034 13.9 0.0 0.12 12.1 0.0 2.0 2 0 0 2 2 2 0 LexA DNA binding domain DUF4258 PF14076.6 BAD85119.1 - 0.075 13.4 0.0 0.2 12.1 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF4258) DUF896 PF05979.12 BAD85119.1 - 0.12 12.3 0.3 2.5 8.0 0.0 2.6 3 0 0 3 3 3 0 Bacterial protein of unknown function (DUF896) OrfB_Zn_ribbon PF07282.11 BAD85120.1 - 8.5e-25 86.5 0.3 2.1e-24 85.2 0.0 1.9 2 0 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 BAD85120.1 - 1e-24 87.1 0.2 2.4e-24 85.9 0.0 1.7 2 0 0 2 2 2 1 Probable transposase HTH_OrfB_IS605 PF12323.8 BAD85120.1 - 2e-10 40.0 0.8 4.9e-10 38.7 0.8 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain TF_Zn_Ribbon PF08271.12 BAD85120.1 - 0.0012 18.3 2.8 0.65 9.5 0.2 2.5 1 1 1 2 2 2 2 TFIIB zinc-binding RecR PF02132.15 BAD85120.1 - 0.33 10.5 1.8 7 6.3 0.1 2.5 1 1 1 2 2 2 0 RecR protein DUF3510 PF12022.8 BAD85120.1 - 1.8 8.9 4.5 18 5.7 0.2 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF3510) Y1_Tnp PF01797.16 BAD85121.1 - 7.7e-39 132.5 2.1 8.7e-39 132.4 2.1 1.0 1 0 0 1 1 1 1 Transposase IS200 like LSM14 PF12701.7 BAD85122.1 - 0.013 15.6 0.0 0.015 15.4 0.0 1.2 1 0 0 1 1 1 0 Scd6-like Sm domain Hfq PF17209.3 BAD85122.1 - 0.11 12.2 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 Hfq protein MobB PF03205.14 BAD85123.1 - 5e-18 65.3 0.1 1.2e-17 64.0 0.0 1.7 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B FeS PF04060.13 BAD85123.1 - 1.8e-08 33.9 0.6 3.3e-08 33.1 0.6 1.5 1 0 0 1 1 1 1 Putative Fe-S cluster SRP54 PF00448.22 BAD85123.1 - 0.003 17.2 0.0 0.0054 16.4 0.0 1.5 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain Sulfatase PF00884.23 BAD85123.1 - 0.0032 16.9 0.0 0.0041 16.6 0.0 1.1 1 0 0 1 1 1 1 Sulfatase CbiA PF01656.23 BAD85123.1 - 0.0078 16.3 0.0 0.017 15.2 0.0 1.8 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MeaB PF03308.16 BAD85123.1 - 0.01 14.8 0.1 0.018 14.0 0.1 1.4 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_26 PF13500.6 BAD85123.1 - 0.015 15.2 0.0 0.032 14.0 0.0 1.6 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 BAD85123.1 - 0.022 14.7 0.1 0.081 12.8 0.0 1.9 2 0 0 2 2 2 0 NTPase HTH_33 PF13592.6 BAD85123.1 - 0.03 14.0 0.1 0.065 12.9 0.1 1.6 1 0 0 1 1 1 0 Winged helix-turn helix Thymidylate_kin PF02223.17 BAD85123.1 - 0.037 13.7 0.0 0.058 13.1 0.0 1.4 1 0 0 1 1 1 0 Thymidylate kinase KTI12 PF08433.10 BAD85123.1 - 0.041 13.3 0.0 0.086 12.3 0.0 1.5 2 0 0 2 2 2 0 Chromatin associated protein KTI12 AAA_16 PF13191.6 BAD85123.1 - 0.053 13.9 0.0 0.071 13.5 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.6 BAD85123.1 - 0.085 12.6 0.0 0.14 11.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 BAD85123.1 - 0.15 12.3 0.3 0.55 10.5 0.3 1.9 2 1 1 3 3 3 0 AAA domain NMT1_3 PF16868.5 BAD85124.1 - 1.9e-87 293.4 4.2 2.2e-87 293.1 4.2 1.0 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.11 BAD85124.1 - 8.4e-14 52.0 2.6 7.2e-13 49.0 2.5 2.1 1 1 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.7 BAD85124.1 - 1.2e-10 41.4 5.6 8.7e-10 38.6 2.0 2.2 1 1 0 2 2 2 1 ABC transporter, phosphonate, periplasmic substrate-binding protein SBP_bac_3 PF00497.20 BAD85124.1 - 9.3e-08 31.8 1.1 1e-06 28.4 0.2 2.1 2 0 0 2 2 2 1 Bacterial extracellular solute-binding proteins, family 3 NMT1_2 PF13379.6 BAD85124.1 - 0.00017 21.4 1.1 0.00025 20.8 1.1 1.2 1 0 0 1 1 1 1 NMT1-like family SBP_bac_11 PF13531.6 BAD85124.1 - 0.00037 20.3 4.8 0.0016 18.3 4.7 1.8 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein OpuAC PF04069.12 BAD85124.1 - 0.0013 18.3 2.3 0.002 17.7 2.3 1.3 1 0 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system TctC PF03401.14 BAD85124.1 - 0.018 14.1 0.2 0.028 13.5 0.2 1.4 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter family receptor DUF1850 PF08905.11 BAD85125.1 - 7.1e-11 42.3 0.0 1e-10 41.8 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1850) DctM PF06808.12 BAD85126.1 - 1.7e-83 280.8 52.3 2.7e-57 194.5 23.9 2.8 2 1 0 3 3 3 2 Tripartite ATP-independent periplasmic transporter, DctM component DUF4288 PF14119.6 BAD85127.1 - 0.061 13.7 0.5 0.071 13.5 0.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4288) GHMP_kinases_N PF00288.26 BAD85128.1 - 3.3e-06 27.2 0.6 6.5e-06 26.3 0.6 1.5 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 BAD85128.1 - 0.00041 20.7 0.6 0.0017 18.7 0.0 2.2 2 0 0 2 2 2 1 GHMP kinases C terminal SARS_lipid_bind PF09399.10 BAD85128.1 - 0.031 14.4 0.0 7.4 6.8 0.0 3.0 2 1 1 3 3 3 0 SARS lipid binding protein AGOG PF09171.10 BAD85129.1 - 6.3e-87 291.0 0.0 9.4e-87 290.4 0.0 1.2 1 0 0 1 1 1 1 N-glycosylase/DNA lyase Bacillus_HBL PF05791.11 BAD85129.1 - 0.11 12.4 0.2 0.21 11.4 0.2 1.4 1 0 0 1 1 1 0 Bacillus haemolytic enterotoxin (HBL) IPK PF03770.16 BAD85129.1 - 0.17 11.7 0.0 0.35 10.7 0.0 1.4 1 1 0 1 1 1 0 Inositol polyphosphate kinase ABC2_membrane_2 PF12679.7 BAD85130.1 - 5.1e-39 134.3 14.1 7.2e-39 133.8 14.1 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 BAD85130.1 - 7e-10 39.1 12.9 3.3e-09 36.9 13.8 1.7 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 BAD85130.1 - 1.1e-09 37.9 17.0 1.1e-09 37.9 17.0 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 BAD85130.1 - 1e-06 28.4 10.0 1e-06 28.4 10.0 1.9 3 0 0 3 3 3 1 ABC-2 family transporter protein DUF21 PF01595.20 BAD85130.1 - 0.094 12.4 6.0 0.19 11.4 6.0 1.5 1 0 0 1 1 1 0 Cyclin M transmembrane N-terminal domain DUF373 PF04123.13 BAD85130.1 - 0.33 10.4 11.4 0.49 9.8 11.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF373) DUF3671 PF12420.8 BAD85130.1 - 0.53 10.4 9.6 6 7.0 0.1 3.3 3 0 0 3 3 3 0 Protein of unknown function DUF2070 PF09843.9 BAD85130.1 - 1.1 7.5 9.3 1.2 7.4 9.3 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) TssN PF17555.2 BAD85130.1 - 1.4 8.3 9.0 0.21 11.0 5.1 1.6 2 0 0 2 2 2 0 Type VI secretion system, TssN ABC_tran PF00005.27 BAD85131.1 - 2.2e-30 106.0 0.0 3.3e-30 105.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 BAD85131.1 - 1.3e-11 44.9 2.7 8.9e-09 35.6 0.0 2.6 2 1 1 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 BAD85131.1 - 1.6e-07 31.9 0.0 3.7e-07 30.8 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_29 PF13555.6 BAD85131.1 - 0.012 15.3 0.0 0.025 14.3 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain SMC_N PF02463.19 BAD85131.1 - 0.012 15.0 0.1 2 7.8 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain Response_reg PF00072.24 BAD85131.1 - 0.05 13.8 0.1 0.22 11.7 0.0 2.0 3 0 0 3 3 3 0 Response regulator receiver domain MMR_HSR1 PF01926.23 BAD85131.1 - 0.053 13.6 0.5 15 5.7 0.1 3.1 2 1 0 2 2 2 0 50S ribosome-binding GTPase AAA_23 PF13476.6 BAD85131.1 - 0.066 13.7 0.2 0.066 13.7 0.2 2.2 1 1 1 2 2 2 0 AAA domain ATP-grasp_5 PF13549.6 BAD85132.1 - 3e-80 268.8 0.3 3.7e-80 268.5 0.3 1.0 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_2 PF08442.10 BAD85132.1 - 1.6e-05 24.6 0.2 2.4e-05 24.0 0.2 1.7 1 1 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 BAD85132.1 - 0.0039 16.7 0.1 0.015 14.8 0.0 1.8 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Succ_CoA_lig PF13607.6 BAD85133.1 - 1.4e-57 193.4 6.3 1.8e-56 189.8 0.5 3.3 4 0 0 4 4 4 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 BAD85133.1 - 6.4e-28 97.6 0.5 1.1e-25 90.4 0.1 3.2 3 0 0 3 3 3 1 CoA binding domain CoA_binding PF02629.19 BAD85133.1 - 1.9e-14 54.1 0.4 1.9e-14 54.1 0.4 2.0 2 0 0 2 2 2 1 CoA binding domain Asparaginase_C PF17763.1 BAD85133.1 - 0.0039 17.4 0.5 0.056 13.7 0.1 2.7 2 0 0 2 2 2 1 Glutaminase/Asparaginase C-terminal domain Ligase_CoA PF00549.19 BAD85133.1 - 0.0078 16.0 0.1 0.037 13.8 0.0 2.1 2 0 0 2 2 2 1 CoA-ligase NAD_Gly3P_dh_N PF01210.23 BAD85133.1 - 0.076 13.0 0.1 0.19 11.7 0.0 1.6 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DUF4849 PF16141.5 BAD85133.1 - 0.08 12.2 0.0 0.13 11.5 0.0 1.2 1 0 0 1 1 1 0 Putative glycoside hydrolase Family 18, chitinase_18 CofC PF01983.16 BAD85133.1 - 0.11 11.6 0.5 1.2 8.3 0.1 2.1 2 0 0 2 2 2 0 Guanylyl transferase CofC like Oxidored_nitro PF00148.19 BAD85133.1 - 0.12 11.0 1.0 0.35 9.5 0.1 2.2 2 1 0 2 2 2 0 Nitrogenase component 1 type Oxidoreductase NTP_transf_2 PF01909.23 BAD85134.1 - 4.7e-09 36.4 0.6 4.3e-08 33.4 0.5 2.3 1 1 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 BAD85134.1 - 1.2e-05 25.3 0.0 4.1e-05 23.6 0.0 1.9 2 0 0 2 2 2 1 Polymerase beta, Nucleotidyltransferase DUF4269 PF14091.6 BAD85134.1 - 0.00052 20.3 0.0 0.00098 19.4 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4269) TPR_12 PF13424.6 BAD85136.1 - 9.6e-10 38.6 10.0 0.00084 19.6 0.5 5.3 5 1 0 5 5 5 2 Tetratricopeptide repeat SNAP PF14938.6 BAD85136.1 - 1.8e-09 37.4 8.4 2.1e-05 24.1 0.3 3.1 2 2 0 2 2 2 2 Soluble NSF attachment protein, SNAP TPR_14 PF13428.6 BAD85136.1 - 6.1e-07 29.7 8.0 8.2 7.5 0.0 6.6 3 2 4 7 7 7 1 Tetratricopeptide repeat TPR_7 PF13176.6 BAD85136.1 - 7.2e-06 25.7 6.2 0.34 11.0 0.0 5.4 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_2 PF07719.17 BAD85136.1 - 8e-06 25.6 22.7 0.0055 16.7 0.0 7.0 6 1 2 8 8 7 2 Tetratricopeptide repeat TPR_MalT PF17874.1 BAD85136.1 - 0.00024 20.6 0.3 0.29 10.5 0.1 3.3 1 1 2 3 3 3 1 MalT-like TPR region TPR_11 PF13414.6 BAD85136.1 - 0.0006 19.4 5.8 0.051 13.3 0.0 4.3 4 0 0 4 4 3 1 TPR repeat TPR_10 PF13374.6 BAD85136.1 - 0.0019 18.0 6.9 0.54 10.2 0.0 5.4 6 1 1 7 7 7 1 Tetratricopeptide repeat Mad3_BUB1_I PF08311.12 BAD85136.1 - 0.0052 16.7 4.5 1 9.4 0.0 4.3 4 2 1 5 5 5 1 Mad3/BUB1 homology region 1 TPR_20 PF14561.6 BAD85136.1 - 0.0063 16.8 4.2 2.5 8.5 0.1 3.7 2 1 1 3 3 3 1 Tetratricopeptide repeat TPR_1 PF00515.28 BAD85136.1 - 0.0063 16.3 14.0 0.018 14.8 0.1 5.5 6 0 0 6 6 6 1 Tetratricopeptide repeat TPR_19 PF14559.6 BAD85136.1 - 0.0065 17.0 9.2 1.1 9.8 0.1 5.2 5 2 2 7 7 7 1 Tetratricopeptide repeat RPN7 PF10602.9 BAD85136.1 - 0.0093 15.7 6.5 0.46 10.2 0.6 3.9 4 1 1 5 5 5 1 26S proteasome subunit RPN7 TPR_8 PF13181.6 BAD85136.1 - 0.0095 16.1 13.9 0.7 10.2 0.1 6.6 7 0 0 7 7 7 1 Tetratricopeptide repeat TPR_16 PF13432.6 BAD85136.1 - 0.033 14.8 12.5 7 7.4 3.1 5.0 6 1 0 6 6 5 0 Tetratricopeptide repeat MIT PF04212.18 BAD85136.1 - 0.12 12.5 11.3 3.2 7.9 0.2 4.8 5 0 0 5 5 5 0 MIT (microtubule interacting and transport) domain SHNi-TPR PF10516.9 BAD85136.1 - 0.12 11.9 0.1 0.12 11.9 0.1 2.4 3 0 0 3 3 3 0 SHNi-TPR NSF PF02071.20 BAD85136.1 - 3.1 8.9 18.7 5.2 8.3 0.3 6.5 6 0 0 6 6 5 0 Aromatic-di-Alanine (AdAR) repeat DUF2225 PF09986.9 BAD85136.1 - 3.5 7.3 7.8 7 6.3 1.0 3.5 1 1 2 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2225) TPR_6 PF13174.6 BAD85136.1 - 5.5 7.9 10.2 1.8e+02 3.1 0.4 5.8 6 1 0 6 6 4 0 Tetratricopeptide repeat Sua5_yciO_yrdC PF01300.18 BAD85137.1 - 1.1e-61 207.5 0.0 2.7e-61 206.2 0.0 1.6 2 0 0 2 2 2 1 Telomere recombination SUA5 PF03481.13 BAD85137.1 - 5.7e-36 124.0 0.0 8.8e-36 123.4 0.0 1.3 1 0 0 1 1 1 1 Putative GTP-binding controlling metal-binding Transcrip_reg PF01709.20 BAD85137.1 - 0.16 11.4 0.0 0.31 10.4 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator Glyco_transf_4 PF13439.6 BAD85138.1 - 6e-34 117.5 1.1 8.6e-34 117.0 1.1 1.2 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.20 BAD85138.1 - 1e-27 96.8 0.0 6.3e-27 94.2 0.0 2.2 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 BAD85138.1 - 7.7e-26 91.4 0.6 1.1e-25 90.9 0.6 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.6 BAD85138.1 - 6.7e-25 88.1 0.0 8e-23 81.3 0.0 2.7 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 BAD85138.1 - 2.5e-17 63.2 0.0 3.6e-17 62.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.6 BAD85138.1 - 7.8e-13 48.6 0.0 1.8e-12 47.5 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 DUF3492 PF11997.8 BAD85138.1 - 5.8e-06 26.2 0.2 0.00058 19.7 0.2 2.5 2 0 0 2 2 2 1 Domain of unknown function (DUF3492) Glyco_transf_5 PF08323.11 BAD85138.1 - 0.0011 18.7 0.1 0.61 9.7 0.0 2.5 1 1 1 2 2 2 2 Starch synthase catalytic domain Asn_synthase PF00733.21 BAD85139.1 - 2.5e-55 188.6 0.4 1.9e-35 123.2 0.0 2.1 1 1 1 2 2 2 2 Asparagine synthase GATase_7 PF13537.6 BAD85139.1 - 8.8e-26 90.2 0.0 1.4e-25 89.6 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 BAD85139.1 - 1.3e-21 77.1 0.0 4.8e-21 75.3 0.0 1.8 2 0 0 2 2 2 1 Glutamine amidotransferase domain NAD_synthase PF02540.17 BAD85139.1 - 0.00058 19.1 0.0 0.0029 16.8 0.0 1.9 2 0 0 2 2 2 1 NAD synthase QueC PF06508.13 BAD85139.1 - 0.023 14.2 0.0 0.036 13.6 0.0 1.3 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC ATP_bind_1 PF03029.17 BAD85140.1 - 8.5e-53 179.6 0.0 9.6e-53 179.4 0.0 1.0 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein SRP54 PF00448.22 BAD85140.1 - 2.2e-06 27.4 0.1 0.00047 19.8 0.1 2.6 3 0 0 3 3 3 1 SRP54-type protein, GTPase domain CbiA PF01656.23 BAD85140.1 - 6.6e-06 26.2 0.0 7.8e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain GTP_EFTU PF00009.27 BAD85140.1 - 8.1e-06 25.5 0.0 0.09 12.3 0.0 2.9 2 1 0 2 2 2 2 Elongation factor Tu GTP binding domain AAA_31 PF13614.6 BAD85140.1 - 4.6e-05 23.4 0.2 0.11 12.5 0.0 2.2 2 0 0 2 2 2 2 AAA domain MeaB PF03308.16 BAD85140.1 - 0.00032 19.8 0.0 0.0037 16.3 0.0 2.3 2 1 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB CLP1_P PF16575.5 BAD85140.1 - 0.00037 20.4 0.0 0.019 14.8 0.0 2.1 2 0 0 2 2 2 1 mRNA cleavage and polyadenylation factor CLP1 P-loop MipZ PF09140.11 BAD85140.1 - 0.00041 19.7 0.0 0.00088 18.6 0.0 1.4 1 1 0 1 1 1 1 ATPase MipZ NTPase_1 PF03266.15 BAD85140.1 - 0.00045 20.2 0.2 0.0024 17.8 0.2 1.9 1 1 0 1 1 1 1 NTPase AAA_24 PF13479.6 BAD85140.1 - 0.00048 19.9 0.0 0.00083 19.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain MobB PF03205.14 BAD85140.1 - 0.00084 19.2 0.0 0.0016 18.4 0.0 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.6 BAD85140.1 - 0.002 18.6 0.0 0.0028 18.1 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain IstB_IS21 PF01695.17 BAD85140.1 - 0.0041 16.9 0.0 0.0094 15.7 0.0 1.5 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_28 PF13521.6 BAD85140.1 - 0.033 14.4 0.5 0.093 13.0 0.5 1.9 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 BAD85140.1 - 0.041 13.6 0.1 0.052 13.3 0.1 1.3 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 BAD85140.1 - 0.049 13.5 0.1 24 4.8 0.1 3.6 4 0 0 4 4 4 0 RsgA GTPase KTI12 PF08433.10 BAD85140.1 - 0.053 13.0 0.0 0.07 12.6 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 APS_kinase PF01583.20 BAD85140.1 - 0.059 13.3 0.0 0.088 12.7 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_18 PF13238.6 BAD85140.1 - 0.062 13.8 0.3 0.097 13.2 0.3 1.5 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.6 BAD85140.1 - 0.12 12.4 0.1 0.29 11.2 0.1 1.8 1 1 0 1 1 1 0 AAA domain PduV-EutP PF10662.9 BAD85140.1 - 0.25 11.1 0.4 1.8 8.3 0.1 2.3 2 1 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_31 PF13614.6 BAD85141.1 - 6.6e-32 110.8 0.3 9.8e-32 110.3 0.3 1.2 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 BAD85141.1 - 9.5e-23 80.7 0.0 1.5e-22 80.0 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 BAD85141.1 - 2.3e-22 79.7 3.7 2.6e-21 76.2 3.7 2.3 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase Fer4_NifH PF00142.18 BAD85141.1 - 8.1e-17 61.5 0.3 3.3e-07 30.0 0.0 2.0 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CBP_BcsQ PF06564.12 BAD85141.1 - 8.2e-17 61.5 0.0 2e-16 60.2 0.0 1.5 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ MipZ PF09140.11 BAD85141.1 - 1.5e-09 37.6 0.3 4.9e-09 35.9 0.3 1.8 1 1 0 1 1 1 1 ATPase MipZ ArsA_ATPase PF02374.15 BAD85141.1 - 6.9e-07 28.7 0.2 4.6e-05 22.7 0.2 2.3 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_26 PF13500.6 BAD85141.1 - 5.1e-05 23.2 0.1 5.1e-05 23.2 0.1 2.2 2 1 0 2 2 2 1 AAA domain SRP54 PF00448.22 BAD85141.1 - 0.00092 18.9 1.6 0.029 14.0 1.1 2.2 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_30 PF13604.6 BAD85141.1 - 0.0016 18.2 0.3 0.0026 17.5 0.0 1.6 2 0 0 2 2 2 1 AAA domain VirC1 PF07015.11 BAD85141.1 - 0.036 13.4 0.5 0.072 12.4 0.5 1.4 1 0 0 1 1 1 0 VirC1 protein APS_kinase PF01583.20 BAD85141.1 - 0.064 13.1 0.2 0.1 12.5 0.2 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_6 PF12774.7 BAD85141.1 - 0.11 11.5 1.0 0.14 11.1 0.3 1.4 2 0 0 2 2 2 0 Hydrolytic ATP binding site of dynein motor region AAA_25 PF13481.6 BAD85141.1 - 0.17 11.4 1.0 0.29 10.7 1.0 1.5 1 1 0 1 1 1 0 AAA domain CLP1_P PF16575.5 BAD85141.1 - 0.21 11.4 0.2 0.32 10.8 0.2 1.3 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_24 PF13479.6 BAD85141.1 - 0.22 11.2 0.4 0.36 10.5 0.4 1.4 1 1 0 1 1 1 0 AAA domain T2SSE PF00437.20 BAD85142.1 - 2e-09 37.0 0.0 4.4e-09 35.8 0.0 1.6 1 0 0 1 1 1 1 Type II/IV secretion system protein KH_1 PF00013.29 BAD85142.1 - 0.00028 20.6 0.4 0.00067 19.4 0.4 1.6 1 0 0 1 1 1 1 KH domain PIN_9 PF18477.1 BAD85142.1 - 0.00046 20.5 4.9 0.013 15.8 2.3 3.4 2 1 0 2 2 1 1 PIN like domain Thymidylate_kin PF02223.17 BAD85142.1 - 0.0043 16.7 0.1 0.02 14.6 0.0 2.1 1 1 1 2 2 2 1 Thymidylate kinase AAA_18 PF13238.6 BAD85142.1 - 0.0063 17.1 1.9 0.018 15.6 0.0 2.8 5 0 0 5 5 2 1 AAA domain PIN_4 PF13638.6 BAD85142.1 - 0.0077 16.5 0.0 0.017 15.4 0.0 1.6 1 0 0 1 1 1 1 PIN domain KH_2 PF07650.17 BAD85142.1 - 0.0083 15.9 7.1 0.01 15.7 2.4 3.3 2 1 1 3 3 3 1 KH domain AAA_25 PF13481.6 BAD85142.1 - 0.013 15.1 0.0 0.039 13.5 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 BAD85142.1 - 0.022 15.0 0.0 0.14 12.5 0.0 2.3 2 1 0 2 2 2 0 AAA domain AAA_16 PF13191.6 BAD85142.1 - 0.03 14.7 0.0 0.13 12.7 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain Sigma54_activ_2 PF14532.6 BAD85142.1 - 0.041 14.0 0.0 0.087 12.9 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain IstB_IS21 PF01695.17 BAD85142.1 - 0.042 13.6 0.0 0.098 12.4 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_28 PF13521.6 BAD85142.1 - 0.049 13.9 0.1 0.15 12.3 0.0 1.9 2 0 0 2 2 1 0 AAA domain AAA_5 PF07728.14 BAD85142.1 - 0.063 13.3 0.0 0.16 12.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) NACHT PF05729.12 BAD85142.1 - 0.076 12.9 0.2 0.16 11.9 0.2 1.4 1 0 0 1 1 1 0 NACHT domain RuvB_N PF05496.12 BAD85142.1 - 0.083 12.6 0.0 0.23 11.2 0.0 1.7 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain AAA PF00004.29 BAD85142.1 - 0.087 13.2 0.0 0.25 11.8 0.0 1.8 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DnaB_C PF03796.15 BAD85142.1 - 0.09 12.1 0.0 0.21 10.9 0.0 1.6 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain FtsK_SpoIIIE PF01580.18 BAD85142.1 - 0.12 11.7 0.0 0.21 10.9 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family RNA_helicase PF00910.22 BAD85142.1 - 0.15 12.4 0.0 0.32 11.4 0.0 1.5 1 0 0 1 1 1 0 RNA helicase TsaE PF02367.17 BAD85142.1 - 0.16 11.9 0.0 0.4 10.7 0.0 1.6 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE SHOCT PF09851.9 BAD85142.1 - 0.72 9.7 5.4 2.2 8.2 0.8 3.1 2 0 0 2 2 2 0 Short C-terminal domain Maf PF02545.14 BAD85143.1 - 1.2e-55 187.9 0.0 1.4e-55 187.7 0.0 1.0 1 0 0 1 1 1 1 Maf-like protein Transposase_23 PF03017.14 BAD85143.1 - 0.043 13.8 0.2 0.87 9.6 0.1 2.2 2 0 0 2 2 2 0 TNP1/EN/SPM transposase NTP_transferase PF00483.23 BAD85144.1 - 1.4e-46 159.1 0.0 2e-46 158.6 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 BAD85144.1 - 1.4e-11 43.6 6.7 8e-05 22.2 1.7 3.3 2 1 0 3 3 3 2 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 BAD85144.1 - 2.7e-10 40.9 0.0 3.9e-10 40.3 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 BAD85144.1 - 0.029 14.1 0.0 0.051 13.3 0.0 1.4 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.19 BAD85144.1 - 0.13 12.2 0.0 0.3 11.0 0.0 1.5 1 0 0 1 1 1 0 Cytidylyltransferase TCR_zetazeta PF11628.8 BAD85144.1 - 0.26 11.0 1.0 0.42 10.3 0.1 1.9 2 0 0 2 2 2 0 T-cell surface glycoprotein CD3 zeta chain Hexapep_2 PF14602.6 BAD85144.1 - 7.4 6.4 7.2 1.9 8.3 0.5 3.1 3 1 1 4 4 4 0 Hexapeptide repeat of succinyl-transferase TrmB PF01978.19 BAD85145.1 - 1e-05 25.3 0.1 1.2e-05 25.0 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 BAD85145.1 - 1.4e-05 24.5 0.2 2.1e-05 24.0 0.2 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding DUF4423 PF14394.6 BAD85145.1 - 0.00024 20.9 0.1 0.0003 20.5 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) MarR_2 PF12802.7 BAD85145.1 - 0.00032 20.5 0.0 0.00042 20.1 0.0 1.3 1 0 0 1 1 1 1 MarR family FeoC PF09012.10 BAD85145.1 - 0.00093 19.2 0.2 0.0013 18.7 0.2 1.3 1 0 0 1 1 1 1 FeoC like transcriptional regulator DUF2250 PF10007.9 BAD85145.1 - 0.0012 18.9 0.0 0.0016 18.5 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_36 PF13730.6 BAD85145.1 - 0.0016 18.4 0.0 0.0028 17.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_20 PF12840.7 BAD85145.1 - 0.0019 18.2 0.0 0.0026 17.8 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain E2F_TDP PF02319.20 BAD85145.1 - 0.0029 17.6 0.0 0.0038 17.3 0.0 1.2 1 0 0 1 1 1 1 E2F/DP family winged-helix DNA-binding domain LexA_DNA_bind PF01726.16 BAD85145.1 - 0.0038 17.0 0.1 0.0084 15.9 0.1 1.6 1 1 0 1 1 1 1 LexA DNA binding domain IF2_N PF04760.15 BAD85145.1 - 0.0059 16.4 0.4 0.023 14.5 0.4 1.9 1 1 0 1 1 1 1 Translation initiation factor IF-2, N-terminal region Ribosomal_S8 PF00410.19 BAD85145.1 - 0.0071 16.3 0.0 0.0071 16.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S8 HTH_28 PF13518.6 BAD85145.1 - 0.0082 16.2 0.0 0.012 15.7 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain DDE_Tnp_1_6 PF13751.6 BAD85145.1 - 0.011 15.9 0.1 0.013 15.7 0.1 1.2 1 0 0 1 1 1 0 Transposase DDE domain GerE PF00196.19 BAD85145.1 - 0.012 15.1 0.1 0.018 14.5 0.1 1.2 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family MarR PF01047.22 BAD85145.1 - 0.014 15.3 0.0 0.019 14.9 0.0 1.2 1 0 0 1 1 1 0 MarR family Sigma70_r3 PF04539.16 BAD85145.1 - 0.016 15.3 0.5 0.027 14.5 0.2 1.5 2 0 0 2 2 1 0 Sigma-70 region 3 HTH_27 PF13463.6 BAD85145.1 - 0.016 15.7 0.2 0.063 13.8 0.1 1.8 2 0 0 2 2 2 0 Winged helix DNA-binding domain FaeA PF04703.12 BAD85145.1 - 0.023 15.1 0.0 0.029 14.7 0.0 1.2 1 0 0 1 1 1 0 FaeA-like protein Fe_dep_repress PF01325.19 BAD85145.1 - 0.023 14.9 0.1 0.037 14.2 0.1 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain RNA_pol_Rpc34 PF05158.12 BAD85145.1 - 0.024 14.0 0.1 0.035 13.5 0.0 1.3 1 1 0 1 1 1 0 RNA polymerase Rpc34 subunit HTH_IclR PF09339.10 BAD85145.1 - 0.028 14.2 0.0 0.04 13.7 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_Mga PF08280.11 BAD85145.1 - 0.031 14.3 0.0 0.047 13.7 0.0 1.4 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_11 PF08279.12 BAD85145.1 - 0.046 13.7 0.2 0.066 13.2 0.2 1.3 1 0 0 1 1 1 0 HTH domain RepL PF05732.11 BAD85145.1 - 0.051 13.0 0.0 0.062 12.7 0.0 1.1 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) Rrf2 PF02082.20 BAD85145.1 - 0.052 13.9 0.0 0.068 13.5 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator HTH_5 PF01022.20 BAD85145.1 - 0.071 13.0 0.1 0.11 12.3 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.6 BAD85145.1 - 0.093 12.7 0.0 0.13 12.3 0.0 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 BAD85145.1 - 0.093 12.2 0.0 0.13 11.7 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_45 PF14947.6 BAD85145.1 - 0.12 12.4 0.1 0.23 11.5 0.0 1.4 2 0 0 2 2 1 0 Winged helix-turn-helix HTH_AsnC-type PF13404.6 BAD85145.1 - 0.14 12.1 0.1 0.22 11.4 0.1 1.4 1 1 0 1 1 1 0 AsnC-type helix-turn-helix domain FeoB_N PF02421.18 BAD85146.1 - 1.2e-65 219.8 0.8 1.9e-65 219.2 0.8 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.14 BAD85146.1 - 4e-42 143.0 18.2 1.2e-28 99.6 2.9 3.1 3 0 0 3 3 3 2 Nucleoside recognition MMR_HSR1 PF01926.23 BAD85146.1 - 1.5e-19 70.1 0.1 2.9e-19 69.2 0.1 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_C PF07664.12 BAD85146.1 - 9.4e-19 66.9 0.9 9.4e-19 66.9 0.9 3.0 3 0 0 3 3 3 1 Ferrous iron transport protein B C terminus FeoB_Cyto PF17910.1 BAD85146.1 - 8.3e-17 61.5 0.6 1.8e-16 60.4 0.5 1.7 2 0 0 2 2 1 1 FeoB cytosolic helical domain RsgA_GTPase PF03193.16 BAD85146.1 - 7.8e-07 29.1 0.4 0.00081 19.3 0.0 2.4 2 0 0 2 2 2 2 RsgA GTPase SRPRB PF09439.10 BAD85146.1 - 1.3e-05 24.8 0.0 2.6e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit MMR_HSR1_Xtn PF16897.5 BAD85146.1 - 0.00028 20.9 0.0 0.00076 19.5 0.0 1.7 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain GTP_EFTU PF00009.27 BAD85146.1 - 0.00052 19.6 0.2 0.0062 16.1 0.2 2.5 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain Ras PF00071.22 BAD85146.1 - 0.0021 17.7 0.0 0.0086 15.7 0.0 1.9 1 1 0 1 1 1 1 Ras family PduV-EutP PF10662.9 BAD85146.1 - 0.0039 17.0 0.1 0.013 15.3 0.1 1.9 1 1 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation AIG1 PF04548.16 BAD85146.1 - 0.012 14.9 0.1 0.02 14.3 0.1 1.2 1 0 0 1 1 1 0 AIG1 family Nucleopor_Nup85 PF07575.13 BAD85146.1 - 0.026 13.1 0.0 0.04 12.5 0.0 1.2 1 0 0 1 1 1 0 Nup85 Nucleoporin ATP_bind_1 PF03029.17 BAD85146.1 - 0.038 13.8 0.2 0.37 10.5 0.2 2.1 1 1 0 1 1 1 0 Conserved hypothetical ATP binding protein MnmE_helical PF12631.7 BAD85146.1 - 0.11 12.6 0.0 0.17 12.0 0.0 1.3 1 0 0 1 1 1 0 MnmE helical domain MeaB PF03308.16 BAD85146.1 - 0.12 11.4 0.2 3.4 6.6 0.0 2.2 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB FeoA PF04023.14 BAD85147.1 - 6.7e-20 71.1 0.1 7.3e-20 71.0 0.1 1.0 1 0 0 1 1 1 1 FeoA domain DUF4870 PF09685.10 BAD85148.1 - 7.3e-09 35.7 4.1 9.4e-09 35.4 4.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4870) QueC PF06508.13 BAD85149.1 - 2.4e-08 33.8 0.0 1.4e-07 31.2 0.0 2.0 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC ThiI PF02568.14 BAD85149.1 - 2.4e-06 27.3 0.0 2.1e-05 24.2 0.0 2.3 1 1 1 2 2 2 1 Thiamine biosynthesis protein (ThiI) tRNA_Me_trans PF03054.16 BAD85149.1 - 0.00052 18.9 0.0 0.00088 18.2 0.0 1.4 1 0 0 1 1 1 1 tRNA methyl transferase Diphthami_syn_2 PF01902.17 BAD85149.1 - 0.0042 16.6 0.1 0.012 15.1 0.0 1.8 2 0 0 2 2 2 1 Diphthamide synthase NAD_synthase PF02540.17 BAD85149.1 - 0.0067 15.6 0.0 0.011 14.9 0.0 1.3 1 0 0 1 1 1 1 NAD synthase PAPS_reduct PF01507.19 BAD85149.1 - 0.0072 16.4 0.0 0.028 14.5 0.0 2.1 1 1 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family ATP_bind_3 PF01171.20 BAD85149.1 - 0.015 15.1 0.0 0.11 12.3 0.0 2.2 1 1 0 1 1 1 0 PP-loop family AIRS PF00586.24 BAD85150.1 - 1.3e-14 54.6 0.0 3.5e-14 53.2 0.0 1.6 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 BAD85150.1 - 2.3e-14 53.8 0.0 3.4e-14 53.2 0.0 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain NTP_transf_2 PF01909.23 BAD85151.1 - 1.6e-12 47.5 1.3 2.1e-12 47.2 1.3 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 BAD85151.1 - 3.6e-11 43.0 0.1 5.1e-11 42.5 0.1 1.4 1 1 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DUF294 PF03445.13 BAD85151.1 - 0.18 11.6 0.0 0.19 11.5 0.0 1.2 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 HEPN PF05168.14 BAD85152.1 - 6.9e-32 110.1 2.5 8e-32 109.8 2.5 1.0 1 0 0 1 1 1 1 HEPN domain eRF1_1 PF03463.15 BAD85153.1 - 2.4e-29 101.9 0.1 4e-29 101.2 0.1 1.4 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.15 BAD85153.1 - 3.5e-25 88.7 1.6 3.5e-25 88.7 1.6 2.0 2 0 0 2 2 2 1 eRF1 domain 3 eRF1_2 PF03464.15 BAD85153.1 - 6.2e-18 65.4 0.4 1.3e-17 64.3 0.4 1.6 1 0 0 1 1 1 1 eRF1 domain 2 baeRF_family10 PF18854.1 BAD85153.1 - 0.0005 20.3 1.1 0.0016 18.7 0.2 2.4 1 1 1 2 2 2 1 Bacterial archaeo-eukaryotic release factor family 10 baeRF_family12 PF18856.1 BAD85153.1 - 0.0019 18.8 0.4 0.0019 18.8 0.4 2.4 2 1 1 3 3 3 1 Bacterial archaeo-eukaryotic release factor family 12 baeRF_family5 PF18846.1 BAD85153.1 - 0.016 15.4 0.1 0.039 14.2 0.1 1.7 1 0 0 1 1 1 0 Bacterial archaeo-eukaryotic release factor family 5 Host_attach PF10116.9 BAD85153.1 - 0.03 14.9 0.0 0.095 13.3 0.0 1.9 1 0 0 1 1 1 0 Protein required for attachment to host cells RasGAP_C PF03836.15 BAD85153.1 - 0.053 13.7 0.4 9.5 6.4 0.0 2.4 2 0 0 2 2 2 0 RasGAP C-terminus Dsl1_N PF11988.8 BAD85153.1 - 0.079 11.9 0.1 0.12 11.4 0.1 1.3 1 0 0 1 1 1 0 Retrograde transport protein Dsl1 N terminal baeRF_family3 PF18845.1 BAD85153.1 - 0.2 11.9 2.1 0.58 10.4 0.8 2.4 2 1 0 2 2 2 0 Bacterial archaeo-eukaryotic release factor family 3 ParE_toxin PF05016.15 BAD85154.1 - 4.5e-10 40.0 0.2 5e-10 39.8 0.2 1.1 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE ParE-like_toxin PF15781.5 BAD85154.1 - 0.00057 19.8 0.0 0.00086 19.2 0.0 1.3 1 1 0 1 1 1 1 ParE-like toxin of type II bacterial toxin-antitoxin system Gp49 PF05973.14 BAD85154.1 - 0.0016 18.5 0.1 0.0021 18.1 0.1 1.2 1 0 0 1 1 1 1 Phage derived protein Gp49-like (DUF891) Cauli_VI PF01693.16 BAD85154.1 - 0.076 13.3 0.4 3.8 7.9 0.0 2.4 2 0 0 2 2 2 0 Caulimovirus viroplasmin Tmemb_cc2 PF10267.9 BAD85155.1 - 0.00056 19.2 3.5 0.00057 19.1 3.5 1.0 1 0 0 1 1 1 1 Predicted transmembrane and coiled-coil 2 protein DUF3450 PF11932.8 BAD85155.1 - 0.0017 17.7 0.4 0.0018 17.6 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3450) COMM_domain PF07258.14 BAD85155.1 - 0.0022 18.1 1.1 0.0089 16.1 0.9 1.9 1 1 0 1 1 1 1 COMM domain RPW8 PF05659.11 BAD85155.1 - 0.0075 16.0 0.4 0.0089 15.7 0.4 1.1 1 0 0 1 1 1 1 Arabidopsis broad-spectrum mildew resistance protein RPW8 CENP-F_leu_zip PF10473.9 BAD85155.1 - 0.018 15.1 4.1 0.019 15.0 4.1 1.0 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF16 PF01519.16 BAD85155.1 - 0.032 14.7 0.3 0.036 14.5 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function DUF16 DUF1128 PF06569.11 BAD85155.1 - 0.036 14.0 0.6 0.042 13.8 0.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1128) Laminin_II PF06009.12 BAD85155.1 - 0.079 13.0 0.0 0.089 12.8 0.0 1.0 1 0 0 1 1 1 0 Laminin Domain II T5orf172 PF10544.9 BAD85155.1 - 0.095 13.3 0.3 0.14 12.8 0.3 1.2 1 0 0 1 1 1 0 T5orf172 domain Bcr-Abl_Oligo PF09036.10 BAD85155.1 - 0.12 12.4 2.8 0.45 10.5 0.3 2.0 1 1 1 2 2 2 0 Bcr-Abl oncoprotein oligomerisation domain ISG65-75 PF11727.8 BAD85155.1 - 0.14 11.3 0.3 0.15 11.3 0.3 1.0 1 0 0 1 1 1 0 Invariant surface glycoprotein Peptidase_M24 PF00557.24 BAD85156.1 - 3.4e-71 239.3 2.1 4.7e-71 238.8 2.1 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 BAD85156.1 - 5.1e-24 85.4 0.1 9.7e-24 84.5 0.1 1.5 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain HAD_2 PF13419.6 BAD85157.1 - 4.1e-06 27.0 0.1 6.5e-06 26.4 0.1 1.4 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase HAD PF12710.7 BAD85157.1 - 0.00039 20.9 0.0 0.00055 20.4 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 BAD85157.1 - 0.0016 18.7 0.0 0.0043 17.4 0.0 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 BAD85157.1 - 0.006 16.7 0.0 3.1 8.0 0.0 2.3 2 0 0 2 2 2 2 Haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 BAD85157.1 - 0.061 13.0 0.0 0.37 10.5 0.0 1.9 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase DUF1704 PF08014.11 BAD85157.1 - 0.12 11.3 0.0 0.16 11.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1704) Ribosomal_L35Ae PF01247.18 BAD85158.1 - 2.3e-13 50.1 0.0 3.3e-13 49.6 0.0 1.2 1 1 0 1 1 1 1 Ribosomal protein L35Ae RimM PF01782.18 BAD85158.1 - 1.8e-07 31.2 1.0 0.0019 18.4 0.4 2.1 2 0 0 2 2 2 2 RimM N-terminal domain TRM PF02005.16 BAD85159.1 - 1.7e-116 389.5 0.0 2e-116 389.3 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_16 PF10294.9 BAD85159.1 - 0.0029 17.4 0.0 0.0044 16.8 0.0 1.2 1 0 0 1 1 1 1 Lysine methyltransferase VIT1 PF01988.19 BAD85160.1 - 1.1e-45 156.2 4.6 1.9e-45 155.4 4.6 1.4 1 0 0 1 1 1 1 VIT family Rubrerythrin PF02915.17 BAD85160.1 - 9.6e-09 35.8 8.1 9.6e-09 35.8 8.1 1.7 2 0 0 2 2 2 1 Rubrerythrin Band_3_cyto PF07565.13 BAD85160.1 - 0.0075 16.1 0.0 0.014 15.2 0.0 1.3 1 0 0 1 1 1 1 Band 3 cytoplasmic domain Ferritin_2 PF13668.6 BAD85160.1 - 0.24 11.6 0.8 3.1 8.0 0.1 2.2 1 1 1 2 2 2 0 Ferritin-like domain PolyA_pol_RNAbd PF12627.7 BAD85160.1 - 0.27 11.0 3.7 0.74 9.6 0.8 2.6 2 0 0 2 2 2 0 Probable RNA and SrmB- binding site of polymerase A PIN PF01850.21 BAD85161.1 - 2e-10 41.2 0.3 2.3e-10 41.0 0.3 1.0 1 0 0 1 1 1 1 PIN domain CcdA PF07362.12 BAD85162.1 - 0.016 15.7 0.0 0.021 15.2 0.0 1.3 1 0 0 1 1 1 0 Post-segregation antitoxin CcdA DUF2458 PF10454.9 BAD85162.1 - 0.018 14.7 0.1 0.019 14.6 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2458) MatE PF01554.18 BAD85163.1 - 1.9e-73 245.4 23.3 7.3e-38 129.7 4.8 2.8 4 0 0 4 4 4 2 MatE MurJ PF03023.14 BAD85163.1 - 1.2e-12 47.2 22.7 4.6e-12 45.3 9.4 2.2 1 1 1 2 2 2 2 Lipid II flippase MurJ Polysacc_synt_C PF14667.6 BAD85163.1 - 4.5e-07 30.0 5.1 4.5e-07 30.0 5.1 4.4 4 2 1 5 5 5 2 Polysaccharide biosynthesis C-terminal domain Ribosomal_L37e PF01907.19 BAD85164.1 - 1.3e-21 76.5 12.6 1.6e-21 76.2 12.6 1.1 1 0 0 1 1 1 1 Ribosomal protein L37e DZR PF12773.7 BAD85164.1 - 0.028 14.5 1.6 0.035 14.1 1.6 1.2 1 0 0 1 1 1 0 Double zinc ribbon HypA PF01155.19 BAD85164.1 - 0.065 13.3 0.7 0.08 13.0 0.7 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA LSM PF01423.22 BAD85165.1 - 5.2e-19 67.7 0.3 5.7e-19 67.6 0.3 1.0 1 0 0 1 1 1 1 LSM domain Alpha-amylase PF00128.24 BAD85166.1 - 1.5e-64 218.7 0.0 2.5e-64 218.0 0.0 1.3 1 0 0 1 1 1 1 Alpha amylase, catalytic domain AMPK1_CBM PF16561.5 BAD85166.1 - 2.2e-11 43.8 0.5 5.2e-11 42.6 0.5 1.6 1 0 0 1 1 1 1 Glycogen recognition site of AMP-activated protein kinase DUF3459 PF11941.8 BAD85166.1 - 7.4e-05 23.0 0.0 0.00018 21.8 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF3459) DUF3416 PF11896.8 BAD85166.1 - 0.012 15.9 1.0 0.22 11.8 0.3 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3416) GlgX_C PF18390.1 BAD85166.1 - 0.052 13.4 0.1 0.14 12.0 0.1 1.6 1 0 0 1 1 1 0 Glycogen debranching enzyme C-terminal domain Glyco_hydro_70 PF02324.16 BAD85166.1 - 0.15 10.3 0.0 0.21 9.7 0.0 1.1 1 0 0 1 1 1 0 Glycosyl hydrolase family 70 Alpha_GJ PF03229.13 BAD85166.1 - 0.22 12.1 3.1 0.37 11.4 3.1 1.2 1 0 0 1 1 1 0 Alphavirus glycoprotein J HGTP_anticodon PF03129.20 BAD85167.1 - 1.5e-23 82.7 1.1 4e-23 81.4 0.1 2.2 2 0 0 2 2 2 1 Anticodon binding domain tRNA-synt_2b PF00587.25 BAD85167.1 - 4.9e-12 46.2 0.3 7.5e-11 42.3 0.1 2.7 2 1 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_2 PF00152.20 BAD85167.1 - 3.1e-05 23.2 1.1 0.045 12.8 0.2 2.4 2 0 0 2 2 2 2 tRNA synthetases class II (D, K and N) DNA_RNApol_7kD PF03604.13 BAD85167.1 - 0.0081 15.8 1.8 1.1 9.0 0.2 2.5 2 0 0 2 2 2 2 DNA directed RNA polymerase, 7 kDa subunit tRNA-synt_2d PF01409.20 BAD85167.1 - 0.053 13.0 0.0 0.39 10.2 0.0 2.4 1 1 0 1 1 1 0 tRNA synthetases class II core domain (F) Zn-ribbon_8 PF09723.10 BAD85167.1 - 0.076 13.1 3.3 1.7 8.8 3.2 2.4 1 1 1 2 2 2 0 Zinc ribbon domain HypA PF01155.19 BAD85167.1 - 0.12 12.4 0.1 0.25 11.4 0.1 1.5 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_4 PF13717.6 BAD85167.1 - 0.16 11.9 1.5 6.4 6.8 0.1 2.7 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 BAD85167.1 - 0.17 11.3 0.4 5 6.7 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain TauE PF01925.19 BAD85168.1 - 1.5e-61 208.1 29.5 1.7e-61 207.9 29.5 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE YajC PF02699.15 BAD85168.1 - 0.28 11.1 0.0 0.28 11.1 0.0 2.0 2 0 0 2 2 2 0 Preprotein translocase subunit EMP70 PF02990.16 BAD85168.1 - 8.8 4.9 8.0 41 2.6 8.0 1.9 1 1 0 1 1 1 0 Endomembrane protein 70 DUF4212 PF13937.6 BAD85169.1 - 0.028 14.8 3.0 0.028 14.8 3.0 2.9 2 1 1 3 3 3 0 Domain of unknown function (DUF4212) YoqO PF14037.6 BAD85169.1 - 0.11 13.1 5.5 0.1 13.1 2.1 2.3 2 1 0 2 2 2 0 YoqO-like protein S_4TM PF18159.1 BAD85169.1 - 0.37 10.1 1.1 11 5.3 0.0 2.3 1 1 0 2 2 2 0 SMODS-associating 4TM effector domain DUF3054 PF11255.8 BAD85169.1 - 0.85 10.2 6.9 0.83 10.2 4.1 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF3054) DUF2070 PF09843.9 BAD85169.1 - 0.86 7.8 6.3 1.2 7.3 6.3 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) DUF2304 PF10066.9 BAD85169.1 - 1.5 9.1 15.5 0.27 11.4 5.8 2.6 2 1 1 3 3 3 0 Uncharacterized conserved protein (DUF2304) UPF0020 PF01170.18 BAD85170.1 - 1.5e-26 93.3 0.0 1.3e-25 90.3 0.0 2.0 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_31 PF13847.6 BAD85170.1 - 2.1e-11 43.8 0.0 3.4e-11 43.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain THUMP PF02926.17 BAD85170.1 - 1.4e-09 38.2 0.0 2.4e-09 37.4 0.0 1.4 1 0 0 1 1 1 1 THUMP domain Methyltransf_25 PF13649.6 BAD85170.1 - 8.5e-09 36.0 0.0 2e-08 34.8 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 BAD85170.1 - 4.2e-07 30.5 0.0 1.1e-06 29.2 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain N6_Mtase PF02384.16 BAD85170.1 - 8.7e-07 28.5 0.0 1.3e-06 27.9 0.0 1.3 1 0 0 1 1 1 1 N-6 DNA Methylase Methyltransf_15 PF09445.10 BAD85170.1 - 9.7e-07 28.5 0.0 1.6e-06 27.8 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase N6_N4_Mtase PF01555.18 BAD85170.1 - 3.5e-06 26.9 0.0 0.00056 19.7 0.0 2.2 2 0 0 2 2 2 1 DNA methylase Cons_hypoth95 PF03602.15 BAD85170.1 - 1.8e-05 24.5 0.0 4.7e-05 23.1 0.0 1.6 2 0 0 2 2 2 1 Conserved hypothetical protein 95 Methyltransf_12 PF08242.12 BAD85170.1 - 0.0011 19.7 0.0 0.0039 17.9 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain AviRa PF11599.8 BAD85170.1 - 0.002 17.6 0.0 0.61 9.5 0.0 2.2 1 1 1 2 2 2 2 RRNA methyltransferase AviRa Ubie_methyltran PF01209.18 BAD85170.1 - 0.0065 15.8 0.0 0.012 15.0 0.0 1.4 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 BAD85170.1 - 0.0074 16.1 0.0 0.067 13.0 0.0 2.4 2 1 0 2 2 2 1 Methyltransferase domain MTS PF05175.14 BAD85170.1 - 0.0089 15.6 0.0 0.013 15.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain NBD_C PF17042.5 BAD85170.1 - 0.047 14.2 0.0 0.084 13.4 0.0 1.3 1 0 0 1 1 1 0 Nucleotide-binding C-terminal domain PrmA PF06325.13 BAD85170.1 - 0.28 10.5 0.0 0.44 9.9 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) CD34_antigen PF06365.12 BAD85171.1 - 0.63 9.6 0.1 0.63 9.6 0.1 1.6 2 0 0 2 2 2 0 CD34/Podocalyxin family DoxX PF07681.12 BAD85171.1 - 1.7 9.3 12.5 4.1 8.1 7.7 2.1 2 0 0 2 2 2 0 DoxX tRNA-synt_2c PF01411.19 BAD85173.1 - 1.4e-12 47.0 0.0 1.8e-12 46.5 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.14 BAD85173.1 - 2.8e-08 33.7 0.3 5.3e-08 32.8 0.3 1.4 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain Ntox33 PF15533.6 BAD85173.1 - 0.066 13.7 1.3 0.21 12.1 0.0 2.4 3 0 0 3 3 3 0 Bacterial toxin 33 TFX_C PF14601.6 BAD85174.1 - 0.11 12.5 0.4 0.53 10.3 0.0 2.1 2 0 0 2 2 2 0 DNA_binding protein, TFX, C-term DUF1236 PF06823.12 BAD85174.1 - 0.15 12.0 0.5 9.1 6.2 0.0 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF1236) SDF PF00375.18 BAD85175.1 - 4.1e-126 421.1 36.5 4.7e-126 420.9 36.5 1.0 1 0 0 1 1 1 1 Sodium:dicarboxylate symporter family BPL_LplA_LipB PF03099.19 BAD85176.1 - 2.1e-18 66.5 0.0 3.7e-18 65.7 0.0 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family BPL_C PF02237.17 BAD85176.1 - 2.6e-08 33.6 3.0 4.8e-08 32.8 2.3 1.8 2 0 0 2 2 2 1 Biotin protein ligase C terminal domain FLgD_tudor PF13861.6 BAD85176.1 - 0.04 14.2 0.0 0.092 13.0 0.0 1.8 1 1 0 1 1 1 0 FlgD Tudor-like domain DeoC PF01791.9 BAD85178.1 - 5.5e-36 124.4 0.0 6.4e-36 124.1 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase PucR PF07905.11 BAD85178.1 - 0.0016 18.7 0.0 2.7 8.3 0.0 2.6 2 1 1 3 3 3 2 Purine catabolism regulatory protein-like family Peripla_BP_4 PF13407.6 BAD85178.1 - 0.035 13.7 0.2 0.06 12.9 0.2 1.3 1 0 0 1 1 1 0 Periplasmic binding protein domain PYC_OADA PF02436.18 BAD85179.1 - 1.6e-59 201.0 0.0 3.4e-59 199.9 0.0 1.5 2 0 0 2 2 2 1 Conserved carboxylase domain HMGL-like PF00682.19 BAD85179.1 - 1.8e-41 142.5 0.0 2.4e-41 142.1 0.0 1.1 1 0 0 1 1 1 1 HMGL-like Biotin_lipoyl PF00364.22 BAD85179.1 - 8.4e-25 86.4 2.9 1.9e-24 85.2 2.9 1.7 1 0 0 1 1 1 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 BAD85179.1 - 4.3e-15 55.3 0.2 3.3e-06 26.8 0.0 2.5 1 1 1 2 2 2 2 Biotin-lipoyl like HlyD_3 PF13437.6 BAD85179.1 - 3e-06 27.9 0.1 0.0087 16.7 0.0 2.5 2 0 0 2 2 2 2 HlyD family secretion protein HlyD_D23 PF16576.5 BAD85179.1 - 0.00035 19.9 0.1 0.08 12.2 0.0 2.3 1 1 1 2 2 2 2 Barrel-sandwich domain of CusB or HlyD membrane-fusion PTS_EIIA_1 PF00358.20 BAD85179.1 - 0.00097 18.9 0.5 0.74 9.6 0.0 2.9 2 1 1 3 3 3 2 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 RnfC_N PF13375.6 BAD85179.1 - 0.011 15.6 0.5 0.17 11.8 0.1 2.7 2 1 1 3 3 3 0 RnfC Barrel sandwich hybrid domain IMPDH PF00478.25 BAD85179.1 - 0.06 12.3 0.2 0.11 11.5 0.2 1.3 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain NQRA PF05896.11 BAD85179.1 - 0.066 12.6 0.4 0.74 9.2 0.2 2.0 1 1 1 2 2 2 0 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) NanE PF04131.14 BAD85179.1 - 0.11 11.7 0.1 0.21 10.7 0.1 1.5 1 0 0 1 1 1 0 Putative N-acetylmannosamine-6-phosphate epimerase GCV_H PF01597.19 BAD85179.1 - 0.16 11.9 1.6 0.17 11.8 0.2 1.7 2 0 0 2 2 2 0 Glycine cleavage H-protein YqfD PF06898.11 BAD85179.1 - 0.26 10.1 3.4 0.84 8.4 0.1 2.7 2 1 1 3 3 3 0 Putative stage IV sporulation protein YqfD CstA PF02554.14 BAD85180.1 - 2.6e-111 372.2 26.7 2.6e-111 372.2 26.7 2.0 2 0 0 2 2 2 1 Carbon starvation protein CstA CstA_5TM PF13722.6 BAD85180.1 - 1.1e-30 106.4 13.2 1.1e-30 106.4 13.2 3.1 2 1 0 2 2 2 1 5TM C-terminal transporter carbon starvation CstA ArsA_ATPase PF02374.15 BAD85183.1 - 1.6e-75 254.2 0.2 2.2e-75 253.7 0.2 1.2 1 0 0 1 1 1 1 Anion-transporting ATPase AAA_31 PF13614.6 BAD85183.1 - 5.2e-15 55.8 0.0 9.2e-15 55.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 BAD85183.1 - 8.7e-11 42.0 0.0 1.5e-10 41.3 0.0 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 BAD85183.1 - 2.5e-06 27.1 1.4 0.00019 21.0 0.1 2.9 3 0 0 3 3 3 1 NUBPL iron-transfer P-loop NTPase Fer4_NifH PF00142.18 BAD85183.1 - 1.2e-05 24.9 0.0 2.8e-05 23.7 0.0 1.6 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family PhoH PF02562.16 BAD85183.1 - 0.00021 20.8 0.4 0.001 18.5 0.4 2.0 1 1 0 1 1 1 1 PhoH-like protein SRP54 PF00448.22 BAD85183.1 - 0.00036 20.2 0.3 0.001 18.8 0.1 1.8 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain MipZ PF09140.11 BAD85183.1 - 0.00085 18.7 0.2 0.017 14.4 0.2 2.2 1 1 1 2 2 2 1 ATPase MipZ ATP_bind_1 PF03029.17 BAD85183.1 - 0.004 17.0 1.5 0.026 14.3 0.1 2.5 3 1 0 3 3 3 1 Conserved hypothetical ATP binding protein AAA_25 PF13481.6 BAD85183.1 - 0.005 16.4 0.0 0.016 14.8 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 BAD85183.1 - 0.0087 15.8 0.0 0.015 15.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain MeaB PF03308.16 BAD85183.1 - 0.017 14.1 0.0 0.03 13.3 0.0 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB CBP_BcsQ PF06564.12 BAD85183.1 - 0.021 14.3 0.0 0.04 13.4 0.0 1.4 1 0 0 1 1 1 0 Cellulose biosynthesis protein BcsQ AAA_24 PF13479.6 BAD85183.1 - 0.11 12.2 0.3 0.27 10.9 0.3 1.8 1 1 0 1 1 1 0 AAA domain DUF2408 PF10303.9 BAD85183.1 - 0.17 12.4 3.3 3.9 8.0 0.5 2.8 2 1 0 2 2 2 0 Protein of unknown function (DUF2408) NB-ARC PF00931.22 BAD85183.1 - 0.25 10.5 2.6 0.44 9.7 0.9 2.3 2 1 0 2 2 2 0 NB-ARC domain FeS_assembly_P PF01883.19 BAD85184.1 - 1.1e-07 31.9 0.8 3e-07 30.5 0.8 1.8 1 1 0 1 1 1 1 Iron-sulfur cluster assembly protein MazE_antitoxin PF04014.18 BAD85186.1 - 5.7e-12 45.3 0.8 1.1e-11 44.4 0.8 1.5 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin eIF-1a PF01176.19 BAD85186.1 - 0.052 13.4 0.2 0.073 12.9 0.2 1.3 1 0 0 1 1 1 0 Translation initiation factor 1A / IF-1 WG_beta_rep PF14903.6 BAD85186.1 - 0.13 12.6 0.7 0.36 11.1 0.2 2.0 2 1 0 2 2 2 0 WG containing repeat SF3a60_bindingd PF12108.8 BAD85186.1 - 4.8 7.2 5.1 1.6 8.7 1.6 2.0 2 0 0 2 2 2 0 Splicing factor SF3a60 binding domain PIN PF01850.21 BAD85187.1 - 3.5e-23 82.4 1.4 3.9e-23 82.3 1.4 1.0 1 0 0 1 1 1 1 PIN domain Hydrolase_4 PF12146.8 BAD85188.1 - 8e-69 231.5 0.0 9.3e-69 231.3 0.0 1.0 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 BAD85188.1 - 5.2e-22 78.7 0.0 4.9e-18 65.7 0.0 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 BAD85188.1 - 2.7e-19 70.7 0.0 3.4e-19 70.3 0.0 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.21 BAD85188.1 - 2e-08 34.0 0.0 0.00017 21.2 0.0 2.4 2 1 0 2 2 2 2 Prolyl oligopeptidase family Abhydrolase_2 PF02230.16 BAD85188.1 - 3.5e-05 23.7 0.0 0.017 15.0 0.0 3.0 2 1 1 3 3 3 1 Phospholipase/Carboxylesterase Abhydrolase_5 PF12695.7 BAD85188.1 - 0.00025 20.8 0.0 0.0066 16.2 0.0 2.4 2 1 0 2 2 2 1 Alpha/beta hydrolase family FSH1 PF03959.13 BAD85188.1 - 0.00036 20.3 0.0 0.0014 18.3 0.0 1.8 1 1 0 1 1 1 1 Serine hydrolase (FSH1) Ser_hydrolase PF06821.13 BAD85188.1 - 0.0028 17.5 0.0 0.0054 16.6 0.0 1.4 1 0 0 1 1 1 1 Serine hydrolase Esterase PF00756.20 BAD85188.1 - 0.003 17.2 0.0 0.0041 16.8 0.0 1.4 1 1 0 1 1 1 1 Putative esterase Thioesterase PF00975.20 BAD85188.1 - 0.0034 17.5 0.0 0.005 17.0 0.0 1.2 1 0 0 1 1 1 1 Thioesterase domain AXE1 PF05448.12 BAD85188.1 - 0.004 15.9 0.0 0.017 13.8 0.0 1.9 2 0 0 2 2 2 1 Acetyl xylan esterase (AXE1) Abhydrolase_4 PF08386.10 BAD85188.1 - 0.0044 17.1 0.0 0.012 15.8 0.0 1.7 1 0 0 1 1 1 1 TAP-like protein DLH PF01738.18 BAD85188.1 - 0.01 15.4 0.0 0.051 13.1 0.0 1.9 2 0 0 2 2 2 0 Dienelactone hydrolase family DUF3141 PF11339.8 BAD85188.1 - 0.06 11.8 0.0 0.24 9.8 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3141) Palm_thioest PF02089.15 BAD85188.1 - 0.062 13.1 0.0 0.075 12.9 0.0 1.2 1 0 0 1 1 1 0 Palmitoyl protein thioesterase UPF0227 PF05728.12 BAD85188.1 - 0.11 12.4 0.0 0.22 11.5 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0227) DpaA_N PF16924.5 BAD85188.1 - 0.13 12.4 0.0 0.25 11.4 0.0 1.4 1 0 0 1 1 1 0 Dipicolinate synthase subunit A N-terminal domain DUF1749 PF08538.10 BAD85188.1 - 0.22 10.6 0.0 0.31 10.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1749) Adenylsucc_synt PF00709.21 BAD85191.1 - 1.4e-90 304.2 2.1 1.8e-44 152.3 0.0 3.0 1 1 2 3 3 3 3 Adenylosuccinate synthetase AA_kinase PF00696.28 BAD85191.1 - 0.021 14.4 0.0 0.023 14.3 0.0 1.2 1 0 0 1 1 1 0 Amino acid kinase family Epimerase PF01370.21 BAD85193.1 - 5e-62 209.5 0.0 5.9e-62 209.3 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 BAD85193.1 - 1.4e-58 198.9 0.0 2e-58 198.4 0.0 1.2 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 BAD85193.1 - 1.4e-21 76.7 0.0 1.8e-21 76.4 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 BAD85193.1 - 3.3e-17 62.6 0.7 5.4e-16 58.6 0.7 2.3 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 BAD85193.1 - 2.9e-16 59.4 0.0 3.7e-16 59.1 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 BAD85193.1 - 1.1e-13 51.0 0.0 2.2e-10 40.2 0.0 2.4 2 1 0 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.6 BAD85193.1 - 9e-09 35.5 0.0 1.8e-08 34.5 0.0 1.5 1 0 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 BAD85193.1 - 0.00016 21.3 0.2 0.00032 20.4 0.2 1.5 1 0 0 1 1 1 1 NmrA-like family adh_short PF00106.25 BAD85193.1 - 0.0023 17.4 0.2 0.014 14.9 0.2 2.1 1 1 0 1 1 1 1 short chain dehydrogenase Sacchrp_dh_NADP PF03435.18 BAD85193.1 - 0.0067 16.7 0.1 0.012 15.9 0.1 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain TrkA_N PF02254.18 BAD85193.1 - 0.026 14.8 0.2 0.055 13.7 0.2 1.6 1 0 0 1 1 1 0 TrkA-N domain PBECR3 PF18812.1 BAD85193.1 - 0.062 13.3 0.0 16 5.5 0.0 2.4 2 0 0 2 2 2 0 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3 DAO PF01266.24 BAD85193.1 - 0.14 11.7 0.0 0.23 11.0 0.0 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase Prefoldin PF02996.17 BAD85194.1 - 1.1e-27 96.3 8.7 1.5e-27 95.9 8.7 1.2 1 0 0 1 1 1 1 Prefoldin subunit Prefoldin_2 PF01920.20 BAD85194.1 - 5.8e-06 26.2 14.0 0.00075 19.4 3.5 2.3 2 0 0 2 2 2 2 Prefoldin subunit Med9 PF07544.13 BAD85194.1 - 0.0002 21.4 0.3 0.0002 21.4 0.3 2.7 2 2 2 4 4 4 1 RNA polymerase II transcription mediator complex subunit 9 CENP-Q PF13094.6 BAD85194.1 - 0.0012 19.0 1.0 0.0012 19.0 1.0 2.0 2 0 0 2 2 1 1 CENP-Q, a CENPA-CAD centromere complex subunit OmpH PF03938.14 BAD85194.1 - 0.0019 18.5 5.2 0.0019 18.5 5.2 2.2 2 0 0 2 2 2 1 Outer membrane protein (OmpH-like) SlyX PF04102.12 BAD85194.1 - 0.0042 17.7 2.9 0.0042 17.7 2.9 2.2 2 0 0 2 2 2 1 SlyX Prefoldin_3 PF13758.6 BAD85194.1 - 0.0055 16.7 0.4 0.011 15.8 0.4 1.6 1 1 0 1 1 1 1 Prefoldin subunit FmiP_Thoc5 PF09766.9 BAD85194.1 - 0.0091 15.3 3.4 0.0091 15.3 3.4 1.5 2 0 0 2 2 2 1 Fms-interacting protein/Thoc5 YkyA PF10368.9 BAD85194.1 - 0.0091 15.7 8.7 0.053 13.2 1.7 2.1 2 0 0 2 2 2 1 Putative cell-wall binding lipoprotein AAA_13 PF13166.6 BAD85194.1 - 0.011 14.5 1.6 0.011 14.5 1.6 1.6 2 0 0 2 2 2 0 AAA domain COG2 PF06148.11 BAD85194.1 - 0.011 15.8 1.0 0.011 15.8 1.0 1.7 2 0 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF1664 PF07889.12 BAD85194.1 - 0.013 15.5 2.0 0.034 14.2 0.3 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) DUF16 PF01519.16 BAD85194.1 - 0.014 15.9 0.7 0.014 15.9 0.7 2.0 2 0 0 2 2 2 0 Protein of unknown function DUF16 Sec2p PF06428.11 BAD85194.1 - 0.014 15.3 1.0 0.014 15.3 1.0 2.2 2 0 0 2 2 2 0 GDP/GTP exchange factor Sec2p ERM PF00769.19 BAD85194.1 - 0.015 15.1 5.7 0.015 15.1 5.7 2.1 2 0 0 2 2 2 0 Ezrin/radixin/moesin family Uso1_p115_C PF04871.13 BAD85194.1 - 0.018 15.4 2.7 0.018 15.4 2.7 2.3 2 0 0 2 2 2 0 Uso1 / p115 like vesicle tethering protein, C terminal region MscS_porin PF12795.7 BAD85194.1 - 0.019 14.5 6.0 0.019 14.5 6.0 2.1 2 0 0 2 2 2 0 Mechanosensitive ion channel porin domain DUF4296 PF14129.6 BAD85194.1 - 0.02 15.5 1.0 0.35 11.5 0.2 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4296) DUF2570 PF10828.8 BAD85194.1 - 0.024 14.4 2.9 0.024 14.4 2.9 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2570) Noelin-1 PF12308.8 BAD85194.1 - 0.025 14.6 3.9 0.16 11.9 0.5 2.1 2 0 0 2 2 2 0 Neurogenesis glycoprotein PspA_IM30 PF04012.12 BAD85194.1 - 0.028 14.0 5.8 0.028 14.0 5.8 2.1 2 0 0 2 2 2 0 PspA/IM30 family Glutaredoxin2_C PF04399.13 BAD85194.1 - 0.03 14.2 0.3 0.03 14.2 0.3 1.6 2 0 0 2 2 2 0 Glutaredoxin 2, C terminal domain Laminin_II PF06009.12 BAD85194.1 - 0.035 14.1 0.4 0.035 14.1 0.4 1.9 2 0 0 2 2 2 0 Laminin Domain II TPR_2 PF07719.17 BAD85194.1 - 0.048 13.8 1.1 2.6 8.4 1.0 3.0 2 0 0 2 2 2 0 Tetratricopeptide repeat Fib_alpha PF08702.10 BAD85194.1 - 0.058 13.6 4.1 0.051 13.8 3.1 1.6 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family TraF_2 PF13729.6 BAD85194.1 - 0.061 12.7 0.4 0.084 12.2 0.2 1.5 1 1 0 1 1 1 0 F plasmid transfer operon, TraF, protein FlxA PF14282.6 BAD85194.1 - 0.088 12.8 12.7 0.49 10.4 3.8 2.4 2 0 0 2 2 2 0 FlxA-like protein DUF5082 PF16888.5 BAD85194.1 - 0.1 12.9 6.4 0.22 11.8 5.0 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF5082) BORCS7 PF16088.5 BAD85194.1 - 0.1 12.8 2.4 0.23 11.8 0.2 2.1 2 0 0 2 2 2 0 BLOC-1-related complex sub-unit 7 NPV_P10 PF05531.12 BAD85194.1 - 0.15 12.5 4.5 0.78 10.3 1.2 2.2 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein Fzo_mitofusin PF04799.13 BAD85194.1 - 0.17 11.4 4.2 0.9 9.1 0.4 2.2 2 0 0 2 2 2 0 fzo-like conserved region BLOC1_2 PF10046.9 BAD85194.1 - 0.21 11.9 7.9 0.42 10.9 1.2 2.4 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 FlaC_arch PF05377.11 BAD85194.1 - 0.23 11.9 4.1 0.62 10.5 0.6 2.8 2 2 2 4 4 3 0 Flagella accessory protein C (FlaC) Syntaxin-6_N PF09177.11 BAD85194.1 - 0.28 11.8 2.4 0.65 10.6 0.2 2.1 2 0 0 2 2 2 0 Syntaxin 6, N-terminal PHM7_cyt PF14703.6 BAD85194.1 - 0.29 11.4 4.3 0.46 10.7 4.3 1.7 1 1 0 1 1 1 0 Cytosolic domain of 10TM putative phosphate transporter XhlA PF10779.9 BAD85194.1 - 0.31 11.3 2.9 0.66 10.2 2.9 1.6 1 0 0 1 1 1 0 Haemolysin XhlA CC2-LZ PF16516.5 BAD85194.1 - 0.32 11.4 9.8 0.35 11.3 3.3 2.2 2 0 0 2 2 2 0 Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator Spc7 PF08317.11 BAD85194.1 - 0.35 9.7 13.2 1.5 7.6 13.2 1.8 1 1 0 1 1 1 0 Spc7 kinetochore protein SKA1 PF07160.12 BAD85194.1 - 0.43 10.4 5.9 0.059 13.2 1.6 1.7 2 0 0 2 2 2 0 Spindle and kinetochore-associated protein 1 PEP-utilisers_N PF05524.13 BAD85194.1 - 0.73 10.0 8.0 0.13 12.5 3.0 2.2 1 1 1 2 2 2 0 PEP-utilising enzyme, N-terminal DUF724 PF05266.14 BAD85194.1 - 0.78 9.5 9.9 0.056 13.3 4.7 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF724) Tektin PF03148.14 BAD85194.1 - 0.9 8.2 10.3 0.03 13.1 3.5 1.8 2 0 0 2 2 2 0 Tektin family DUF4164 PF13747.6 BAD85194.1 - 1.2 9.5 7.5 0.57 10.5 1.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4164) Spc24 PF08286.11 BAD85194.1 - 1.7 8.9 10.8 0.17 12.1 1.9 2.2 2 1 0 2 2 2 0 Spc24 subunit of Ndc80 bZIP_Maf PF03131.17 BAD85194.1 - 1.9 9.0 10.7 4.2 7.9 2.6 2.2 2 0 0 2 2 2 0 bZIP Maf transcription factor CRR7 PF12095.8 BAD85194.1 - 2.8 8.5 7.0 11 6.6 0.5 2.1 2 0 0 2 2 2 0 Protein CHLORORESPIRATORY REDUCTION 7 DUF812 PF05667.11 BAD85194.1 - 2.9 6.7 11.3 0.13 11.1 3.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF812) BMFP PF04380.13 BAD85194.1 - 3.1 8.3 9.2 6.3 7.4 1.7 3.1 2 2 1 3 3 3 0 Membrane fusogenic activity TPR_MLP1_2 PF07926.12 BAD85194.1 - 4.9 7.2 20.0 0.59 10.2 6.7 2.6 2 1 0 2 2 2 0 TPR/MLP1/MLP2-like protein ADIP PF11559.8 BAD85194.1 - 5.8 7.0 12.7 0.62 10.1 3.5 2.1 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding DASH_Hsk3 PF08227.11 BAD85194.1 - 7.8 6.9 14.6 14 6.2 0.3 2.5 2 0 0 2 2 2 0 DASH complex subunit Hsk3 like HAUS-augmin3 PF14932.6 BAD85194.1 - 9.1 5.8 17.6 1.3 8.6 5.2 2.0 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 3 YabA PF06156.13 BAD85194.1 - 9.2 7.0 7.9 1.8 9.3 1.1 2.2 2 0 0 2 2 2 0 Initiation control protein YabA RNA_pol_3_Rpc31 PF11705.8 BAD85195.1 - 4.2 7.5 25.3 5 7.3 25.3 1.0 1 0 0 1 1 1 0 DNA-directed RNA polymerase III subunit Rpc31 MFS_1 PF07690.16 BAD85196.1 - 1.6e-29 103.0 61.9 1.1e-23 83.7 42.0 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 BAD85196.1 - 7.7e-09 34.9 15.9 5.9e-06 25.4 0.4 2.3 2 0 0 2 2 2 2 MFS_1 like family BT1 PF03092.16 BAD85196.1 - 0.00027 19.3 2.6 0.00027 19.3 2.6 2.1 2 0 0 2 2 2 1 BT1 family Sugar_tr PF00083.24 BAD85196.1 - 0.025 13.5 22.0 0.061 12.2 5.9 2.8 2 1 1 3 3 3 0 Sugar (and other) transporter Fe-ADH PF00465.19 BAD85197.1 - 1.2e-99 333.6 0.0 1.3e-99 333.4 0.0 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.6 BAD85197.1 - 4.2e-14 52.9 0.1 1e-06 28.6 0.0 2.2 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase AAA_5 PF07728.14 BAD85198.1 - 3.5e-20 72.4 0.0 7.9e-10 38.9 0.0 2.8 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA PF00004.29 BAD85198.1 - 9.8e-06 26.0 0.1 0.00091 19.7 0.0 2.5 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 BAD85198.1 - 4.7e-05 23.8 0.0 0.00019 21.8 0.0 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_7 PF12775.7 BAD85198.1 - 0.00013 21.5 0.0 0.00043 19.8 0.0 1.8 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_22 PF13401.6 BAD85198.1 - 0.0012 19.1 0.0 0.01 16.1 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.6 BAD85198.1 - 0.0061 16.6 2.2 1.5 8.9 0.0 3.2 3 0 0 3 3 3 1 AAA domain ATPase PF06745.13 BAD85198.1 - 0.016 14.6 0.0 0.044 13.1 0.0 1.8 1 0 0 1 1 1 0 KaiC AAA_24 PF13479.6 BAD85198.1 - 0.02 14.6 0.1 0.047 13.4 0.0 1.7 2 0 0 2 2 1 0 AAA domain IstB_IS21 PF01695.17 BAD85198.1 - 0.029 14.1 0.0 0.097 12.4 0.0 1.9 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_11 PF13086.6 BAD85198.1 - 0.035 13.9 0.0 0.1 12.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 BAD85198.1 - 0.035 13.5 0.0 0.073 12.5 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI RuvB_N PF05496.12 BAD85198.1 - 0.04 13.7 0.0 0.26 11.0 0.0 2.1 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain PhoH PF02562.16 BAD85198.1 - 0.042 13.3 0.0 0.08 12.4 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein Kinesin PF00225.23 BAD85198.1 - 0.042 12.8 0.1 0.068 12.1 0.1 1.3 1 0 0 1 1 1 0 Kinesin motor domain TsaE PF02367.17 BAD85198.1 - 0.062 13.3 0.0 0.13 12.3 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Sigma54_activat PF00158.26 BAD85198.1 - 0.075 12.7 0.0 0.19 11.4 0.0 1.6 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_25 PF13481.6 BAD85198.1 - 0.077 12.6 0.0 0.19 11.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 BAD85198.1 - 0.17 12.2 0.0 1.9 8.8 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 BAD85198.1 - 0.19 11.4 0.0 0.6 9.8 0.0 1.7 2 0 0 2 2 2 0 AAA domain McrBC PF10117.9 BAD85199.1 - 7.6e-82 275.0 0.0 1e-81 274.6 0.0 1.1 1 0 0 1 1 1 1 McrBC 5-methylcytosine restriction system component HSDR_N_2 PF13588.6 BAD85199.1 - 0.15 12.1 0.3 1.5 8.9 0.1 2.7 2 1 0 2 2 2 0 Type I restriction enzyme R protein N terminus (HSDR_N) MFS_1 PF07690.16 BAD85200.1 - 1.7e-14 53.5 20.2 1.7e-14 53.5 20.2 2.1 2 0 0 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.13 BAD85200.1 - 1.9 6.8 12.0 1.1 7.5 8.3 2.0 1 1 1 2 2 2 0 Transmembrane secretion effector MFS_1 PF07690.16 BAD85201.1 - 1.5e-35 122.8 13.8 1.9e-35 122.5 13.8 1.0 1 0 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.24 BAD85201.1 - 4.6e-15 55.4 9.7 5.6e-15 55.1 9.7 1.1 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_4 PF06779.14 BAD85201.1 - 2.8e-06 26.9 4.8 2.7e-05 23.7 3.2 2.0 1 1 1 2 2 2 2 Uncharacterised MFS-type transporter YbfB OATP PF03137.20 BAD85201.1 - 0.0066 14.8 3.5 0.26 9.5 0.3 2.1 1 1 1 2 2 2 2 Organic Anion Transporter Polypeptide (OATP) family TRI12 PF06609.13 BAD85201.1 - 0.011 14.2 1.7 0.012 14.0 1.7 1.1 1 0 0 1 1 1 0 Fungal trichothecene efflux pump (TRI12) MFS_2 PF13347.6 BAD85201.1 - 0.041 12.4 17.7 0.078 11.5 7.7 2.1 1 1 1 2 2 2 0 MFS/sugar transport protein DUF104 PF01954.16 BAD85202.1 - 1.2e-13 51.2 5.1 1.4e-13 51.0 5.1 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF104 PIN PF01850.21 BAD85203.1 - 3.1e-22 79.4 0.1 4.6e-22 78.8 0.1 1.3 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.6 BAD85203.1 - 1.6e-05 25.6 0.0 3.6e-05 24.5 0.0 1.6 1 1 0 1 1 1 1 PIN domain PIN_12 PF16289.5 BAD85203.1 - 0.0058 17.1 0.3 0.0093 16.5 0.3 1.5 1 1 0 1 1 1 1 PIN domain PIN_9 PF18477.1 BAD85203.1 - 0.04 14.2 0.0 0.51 10.7 0.0 2.1 2 0 0 2 2 2 0 PIN like domain DUF5615 PF18480.1 BAD85203.1 - 0.094 12.5 0.2 0.98 9.2 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF5615) DEAD PF00270.29 BAD85204.1 - 4.5e-29 101.5 0.0 1.9e-27 96.2 0.0 2.5 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 BAD85204.1 - 2.2e-19 69.8 0.1 2.4e-18 66.5 0.1 2.6 3 0 0 3 3 3 1 Helicase conserved C-terminal domain DEAD_assoc PF08494.11 BAD85204.1 - 2.6e-18 66.5 2.4 1.3e-16 60.9 1.7 3.2 2 1 0 2 2 2 1 DEAD/H associated ResIII PF04851.15 BAD85204.1 - 1.5e-07 31.6 0.0 2.6e-07 30.8 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_19 PF13245.6 BAD85204.1 - 0.0007 19.9 0.1 0.011 16.0 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 BAD85204.1 - 0.0026 17.5 0.0 0.0057 16.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain HypA PF01155.19 BAD85204.1 - 0.017 15.1 0.0 0.04 14.0 0.0 1.6 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA UvrD-helicase PF00580.21 BAD85204.1 - 0.024 14.1 0.0 0.039 13.5 0.0 1.4 1 0 0 1 1 1 0 UvrD/REP helicase N-terminal domain Zn-ribbon_8 PF09723.10 BAD85204.1 - 0.045 13.9 0.3 0.099 12.8 0.3 1.5 1 0 0 1 1 1 0 Zinc ribbon domain AAA_11 PF13086.6 BAD85204.1 - 0.078 12.8 0.0 0.34 10.6 0.0 2.0 1 1 1 2 2 2 0 AAA domain zinc_ribbon_10 PF10058.9 BAD85204.1 - 0.11 12.2 0.3 0.27 11.0 0.3 1.6 1 0 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein Ogr_Delta PF04606.12 BAD85204.1 - 0.2 11.7 0.8 20 5.3 0.3 2.4 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-NADH-PPase PF09297.11 BAD85204.1 - 0.41 10.3 1.7 3.6 7.3 0.2 2.4 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DUF835 PF05763.12 BAD85205.1 - 9.5e-23 80.4 0.0 1.1e-22 80.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF835) SMC_N PF02463.19 BAD85206.1 - 6.3e-74 248.1 28.0 2.2e-73 246.3 28.0 2.3 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain SMC_hinge PF06470.13 BAD85206.1 - 3.9e-35 120.7 0.1 7.1e-34 116.6 0.0 2.9 2 0 0 2 2 2 1 SMC proteins Flexible Hinge Domain AAA_21 PF13304.6 BAD85206.1 - 1.2e-15 58.2 0.6 3.1e-11 43.7 0.1 4.5 3 2 0 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 BAD85206.1 - 8.9e-15 55.3 53.2 2.1e-12 47.5 4.7 4.7 2 2 0 2 2 2 1 AAA ATPase domain Spc7 PF08317.11 BAD85206.1 - 1.6e-11 43.7 146.2 0.0002 20.3 21.6 7.1 2 2 5 8 8 8 6 Spc7 kinetochore protein APG6_N PF17675.1 BAD85206.1 - 2.8e-09 37.6 161.6 0.00018 22.1 23.1 9.9 2 2 6 9 9 9 5 Apg6 coiled-coil region MscS_porin PF12795.7 BAD85206.1 - 5.5e-09 35.9 98.1 5.8e-06 26.0 10.8 7.4 2 2 5 7 7 7 5 Mechanosensitive ion channel porin domain DUF3584 PF12128.8 BAD85206.1 - 1.5e-06 26.1 105.5 0.0002 19.1 43.0 3.9 3 1 1 4 4 4 3 Protein of unknown function (DUF3584) CALCOCO1 PF07888.11 BAD85206.1 - 1.5e-06 27.4 55.1 1.5e-06 27.4 55.1 4.5 2 2 2 4 4 3 1 Calcium binding and coiled-coil domain (CALCOCO1) like AAA_29 PF13555.6 BAD85206.1 - 3.2e-05 23.6 0.1 6.4e-05 22.6 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain CENP-F_leu_zip PF10473.9 BAD85206.1 - 7.8e-05 22.7 24.1 7.8e-05 22.7 24.1 8.9 3 3 4 8 8 7 3 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF1664 PF07889.12 BAD85206.1 - 0.00014 21.9 82.7 0.032 14.3 1.9 10.7 2 2 7 11 11 11 5 Protein of unknown function (DUF1664) AAA_13 PF13166.6 BAD85206.1 - 0.00015 20.6 121.6 0.00098 17.9 30.7 6.9 4 2 4 8 8 8 5 AAA domain TACC_C PF05010.14 BAD85206.1 - 0.00034 20.5 26.1 0.00034 20.5 26.1 7.7 3 2 5 9 9 8 3 Transforming acidic coiled-coil-containing protein (TACC), C-terminal ABC_tran_CTD PF16326.5 BAD85206.1 - 0.00038 20.7 8.5 0.00038 20.7 8.5 13.7 4 4 10 14 14 13 1 ABC transporter C-terminal domain IFT57 PF10498.9 BAD85206.1 - 0.0004 19.5 97.1 0.058 12.4 11.0 7.3 3 2 5 8 8 8 5 Intra-flagellar transport protein 57 Baculo_PEP_C PF04513.12 BAD85206.1 - 0.00042 20.4 35.9 0.001 19.1 2.9 7.8 2 2 6 8 8 8 2 Baculovirus polyhedron envelope protein, PEP, C terminus TPR_MLP1_2 PF07926.12 BAD85206.1 - 0.0007 19.7 139.5 0.035 14.2 18.0 9.4 2 2 7 9 9 9 4 TPR/MLP1/MLP2-like protein Laminin_I PF06008.14 BAD85206.1 - 0.001 18.9 17.9 0.001 18.9 17.9 6.9 3 2 2 5 5 3 1 Laminin Domain I Atg14 PF10186.9 BAD85206.1 - 0.0013 17.9 117.6 0.0071 15.5 12.1 6.7 2 2 5 7 7 7 3 Vacuolar sorting 38 and autophagy-related subunit 14 DUF4407 PF14362.6 BAD85206.1 - 0.0023 17.4 81.1 0.34 10.2 13.8 6.1 2 2 3 5 5 5 3 Domain of unknown function (DUF4407) SHE3 PF17078.5 BAD85206.1 - 0.0024 17.6 11.7 0.0024 17.6 11.7 6.6 2 2 4 6 6 5 2 SWI5-dependent HO expression protein 3 ATG16 PF08614.11 BAD85206.1 - 0.0058 16.9 134.7 0.077 13.2 20.9 8.5 2 2 5 7 7 6 4 Autophagy protein 16 (ATG16) TolA_bind_tri PF16331.5 BAD85206.1 - 0.006 16.6 2.7 0.006 16.6 2.7 9.3 6 2 6 12 12 9 2 TolA binding protein trimerisation DUF3450 PF11932.8 BAD85206.1 - 0.018 14.4 107.9 0.088 12.1 8.0 9.3 2 2 7 9 9 9 0 Protein of unknown function (DUF3450) SbcCD_C PF13558.6 BAD85206.1 - 0.026 14.8 0.0 0.068 13.4 0.0 1.7 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Surfac_D-trimer PF09006.11 BAD85206.1 - 0.032 14.1 0.3 30 4.6 0.1 4.9 4 1 1 5 5 4 0 Lung surfactant protein D coiled-coil trimerisation Filament PF00038.21 BAD85206.1 - 0.079 12.5 132.3 0.021 14.4 49.3 5.0 2 2 2 4 4 4 0 Intermediate filament protein Seryl_tRNA_N PF02403.22 BAD85206.1 - 0.099 12.9 140.9 0.21 11.8 17.0 10.4 3 2 7 10 10 10 0 Seryl-tRNA synthetase N-terminal domain DUF4201 PF13870.6 BAD85206.1 - 0.16 11.7 124.3 0.11 12.2 19.9 8.4 2 2 6 8 8 8 0 Domain of unknown function (DUF4201) EzrA PF06160.12 BAD85206.1 - 0.19 9.9 123.4 0.057 11.6 41.1 6.0 2 2 1 3 3 3 0 Septation ring formation regulator, EzrA FliJ PF02050.16 BAD85206.1 - 1.6 8.9 113.6 0.016 15.4 15.3 9.0 5 2 4 10 10 9 0 Flagellar FliJ protein TelA PF05816.11 BAD85206.1 - 2 7.4 77.7 0.29 10.2 14.7 6.1 2 2 3 6 6 6 0 Toxic anion resistance protein (TelA) GAS PF13851.6 BAD85206.1 - 2.1 7.6 154.3 0.012 15.0 18.7 8.7 3 2 5 8 8 7 0 Growth-arrest specific micro-tubule binding GBR2_CC PF18455.1 BAD85206.1 - 3.2 8.0 13.4 36 4.6 0.7 5.1 4 0 0 4 4 4 0 Gamma-aminobutyric acid type B receptor subunit 2 coiled-coil domain HMMR_N PF15905.5 BAD85206.1 - 4 6.8 147.0 0.09 12.2 31.8 6.4 2 2 3 6 6 6 0 Hyaluronan mediated motility receptor N-terminal DUF812 PF05667.11 BAD85206.1 - 4.6 6.0 142.9 0.014 14.3 27.2 7.2 2 2 4 6 6 6 0 Protein of unknown function (DUF812) AAA_23 PF13476.6 BAD85206.1 - 5.6 7.4 151.7 6.9 7.1 60.5 8.8 3 2 0 3 3 1 0 AAA domain SMC_ScpA PF02616.14 BAD85207.1 - 5.5e-17 62.5 7.7 2.7e-11 43.9 6.7 2.2 1 1 1 2 2 2 2 Segregation and condensation protein ScpA Rad21_Rec8 PF04824.16 BAD85207.1 - 0.00098 18.4 0.0 0.002 17.4 0.0 1.4 1 0 0 1 1 1 1 Conserved region of Rad21 / Rec8 like protein DUF4470 PF14737.6 BAD85207.1 - 0.0057 16.8 0.0 0.14 12.3 0.0 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF4470) CNDH2_C PF16858.5 BAD85207.1 - 0.017 15.0 0.1 0.34 10.7 0.0 2.1 1 1 1 2 2 2 0 Condensin II complex subunit CAP-H2 or CNDH2, C-term AAA_19 PF13245.6 BAD85207.1 - 0.038 14.3 0.1 0.054 13.8 0.1 1.1 1 0 0 1 1 1 0 AAA domain DUF2542 PF10808.8 BAD85209.1 - 0.029 14.9 0.2 0.095 13.2 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2542) ERCC4 PF02732.15 BAD85210.1 - 1.6e-30 106.4 0.0 6.1e-30 104.5 0.0 2.1 2 0 0 2 2 2 1 ERCC4 domain Helicase_C PF00271.31 BAD85210.1 - 1.3e-26 93.1 0.1 2.5e-23 82.5 0.0 2.9 2 1 0 2 2 2 2 Helicase conserved C-terminal domain DEAD PF00270.29 BAD85210.1 - 7.3e-21 74.7 0.0 7.1e-20 71.5 0.0 2.4 2 0 0 2 2 2 1 DEAD/DEAH box helicase ResIII PF04851.15 BAD85210.1 - 3.4e-18 66.2 0.0 2.3e-17 63.6 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit HHH_2 PF12826.7 BAD85210.1 - 4.4e-10 39.5 0.0 1.5e-09 37.8 0.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH PF00633.23 BAD85210.1 - 9.6e-08 31.5 0.1 2.5e-07 30.2 0.1 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 BAD85210.1 - 5.3e-07 30.1 0.1 2.4e-06 28.0 0.0 2.2 2 0 0 2 2 1 1 Helix-hairpin-helix domain HHH_3 PF12836.7 BAD85210.1 - 0.0035 17.6 0.0 0.03 14.6 0.0 2.6 2 0 0 2 2 2 1 Helix-hairpin-helix motif SWI2_SNF2 PF18766.1 BAD85210.1 - 0.0068 16.1 0.0 0.026 14.2 0.0 1.9 2 0 0 2 2 2 1 SWI2/SNF2 ATPase SecA_DEAD PF07517.14 BAD85210.1 - 0.013 14.9 0.1 0.042 13.1 0.0 1.7 2 1 0 2 2 2 0 SecA DEAD-like domain TusA PF01206.17 BAD85210.1 - 0.04 13.7 0.0 29 4.6 0.0 3.7 3 0 0 3 3 3 0 Sulfurtransferase TusA ERCC3_RAD25_C PF16203.5 BAD85210.1 - 0.12 11.6 0.0 0.23 10.7 0.0 1.5 1 0 0 1 1 1 0 ERCC3/RAD25/XPB C-terminal helicase ANF_receptor PF01094.28 BAD85210.1 - 0.23 10.5 0.1 0.55 9.3 0.1 1.6 1 0 0 1 1 1 0 Receptor family ligand binding region 5_3_exonuc PF01367.20 BAD85210.1 - 0.26 11.9 3.0 1.2 9.8 0.0 3.3 3 1 0 3 3 2 0 5'-3' exonuclease, C-terminal SAM fold Peptidase_M55 PF04951.13 BAD85211.1 - 1.9e-83 279.9 0.0 2.1e-83 279.8 0.0 1.0 1 0 0 1 1 1 1 D-aminopeptidase B12-binding_2 PF02607.17 BAD85211.1 - 0.014 15.8 0.0 0.032 14.7 0.0 1.6 1 0 0 1 1 1 0 B12 binding domain ACT_4 PF13291.6 BAD85212.1 - 0.15 12.7 0.0 0.19 12.3 0.0 1.3 1 0 0 1 1 1 0 ACT domain DUF4855 PF16147.5 BAD85214.1 - 1.3e-09 37.6 8.1 8.3e-09 35.0 8.1 2.0 1 1 0 1 1 1 1 Domain of unknown function (DUF4855) PcrB PF01884.17 BAD85215.1 - 1.3e-66 224.3 0.0 1.7e-66 223.9 0.0 1.0 1 0 0 1 1 1 1 PcrB family ThiG PF05690.14 BAD85215.1 - 8.5e-08 31.8 1.4 1.9e-05 24.1 0.2 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG His_biosynth PF00977.21 BAD85215.1 - 1e-07 31.7 0.0 5.8e-07 29.2 0.0 1.9 2 0 0 2 2 2 1 Histidine biosynthesis protein Trp_syntA PF00290.20 BAD85215.1 - 2e-06 26.9 0.2 0.00014 20.8 0.2 2.1 2 0 0 2 2 2 1 Tryptophan synthase alpha chain G3P_antiterm PF04309.12 BAD85215.1 - 1.8e-05 24.2 0.3 4.4e-05 23.0 0.3 1.6 1 0 0 1 1 1 1 Glycerol-3-phosphate responsive antiterminator IMPDH PF00478.25 BAD85215.1 - 0.00013 21.1 0.2 0.0087 15.1 0.2 2.1 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain NanE PF04131.14 BAD85215.1 - 0.0002 20.6 0.3 0.018 14.2 0.2 2.2 2 0 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase DHO_dh PF01180.21 BAD85215.1 - 0.0016 17.8 0.2 0.0059 15.9 0.1 1.9 2 1 0 2 2 2 1 Dihydroorotate dehydrogenase BtpA PF03437.15 BAD85215.1 - 0.0037 16.8 0.2 0.093 12.1 0.0 2.1 2 0 0 2 2 2 1 BtpA family NMO PF03060.15 BAD85215.1 - 0.0082 15.6 0.8 0.0082 15.6 0.8 1.8 2 0 0 2 2 2 1 Nitronate monooxygenase Dus PF01207.17 BAD85215.1 - 0.013 14.6 0.1 0.17 11.0 0.1 2.0 2 0 0 2 2 2 0 Dihydrouridine synthase (Dus) TMP-TENI PF02581.17 BAD85215.1 - 0.021 14.1 0.1 0.043 13.2 0.1 1.5 1 0 0 1 1 1 0 Thiamine monophosphate synthase PEP_hydrolase PF09370.10 BAD85215.1 - 0.026 13.7 0.1 0.051 12.8 0.1 1.4 1 0 0 1 1 1 0 Phosphoenolpyruvate hydrolase-like Usp PF00582.26 BAD85215.1 - 0.031 14.8 0.4 5.9 7.4 0.1 2.2 2 0 0 2 2 2 0 Universal stress protein family Ribul_P_3_epim PF00834.19 BAD85215.1 - 0.032 13.6 0.5 0.053 12.9 0.5 1.3 1 0 0 1 1 1 0 Ribulose-phosphate 3 epimerase family DUF561 PF04481.12 BAD85215.1 - 0.13 11.4 0.2 0.51 9.5 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF561) FMN_dh PF01070.18 BAD85215.1 - 0.15 11.0 1.2 0.29 10.1 0.1 1.8 2 0 0 2 2 2 0 FMN-dependent dehydrogenase PIN PF01850.21 BAD85216.1 - 4.3e-11 43.4 0.0 5.5e-11 43.0 0.0 1.1 1 0 0 1 1 1 1 PIN domain PIN_4 PF13638.6 BAD85216.1 - 0.00099 19.4 0.1 0.033 14.5 0.1 2.4 1 1 0 1 1 1 1 PIN domain PIN_2 PF10130.9 BAD85216.1 - 0.0093 16.2 0.0 0.026 14.7 0.0 1.7 1 1 0 1 1 1 1 PIN domain PIN_3 PF13470.6 BAD85216.1 - 0.021 15.6 0.0 0.03 15.1 0.0 1.3 1 0 0 1 1 1 0 PIN domain PIN_9 PF18477.1 BAD85216.1 - 0.03 14.6 0.6 0.14 12.5 0.0 2.1 2 1 0 2 2 2 0 PIN like domain PIN_12 PF16289.5 BAD85216.1 - 0.068 13.7 0.0 0.092 13.2 0.0 1.3 1 0 0 1 1 1 0 PIN domain DUF104 PF01954.16 BAD85217.1 - 3.6e-17 62.6 0.5 4.5e-17 62.2 0.5 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF104 DUF123 PF01986.16 BAD85218.1 - 1.2e-21 77.0 0.0 1.5e-21 76.7 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF123 GIY-YIG PF01541.24 BAD85218.1 - 0.0042 17.3 0.0 0.0061 16.8 0.0 1.4 1 0 0 1 1 1 1 GIY-YIG catalytic domain DUF2095 PF09868.9 BAD85219.1 - 4.3e-80 266.0 5.9 4.8e-80 265.8 5.9 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2095) ABC_tran PF00005.27 BAD85220.1 - 1.9e-42 145.0 0.0 7.3e-21 75.1 0.0 2.7 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 BAD85220.1 - 2.3e-14 53.9 9.3 0.0028 17.5 0.4 4.4 2 2 1 4 4 4 4 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 BAD85220.1 - 1.3e-11 44.4 7.1 1.7e-05 24.3 1.1 4.0 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain RLI PF04068.15 BAD85220.1 - 3e-11 43.0 1.9 6.1e-11 42.0 1.9 1.6 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI Fer4_6 PF12837.7 BAD85220.1 - 3.6e-09 36.3 12.3 0.00024 21.0 2.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.27 BAD85220.1 - 7.6e-07 28.7 3.5 7.6e-07 28.7 3.5 3.5 3 1 0 3 3 3 1 4Fe-4S binding domain Rad17 PF03215.15 BAD85220.1 - 2.7e-06 27.4 0.0 0.03 14.3 0.0 2.4 2 0 0 2 2 2 2 Rad17 P-loop domain AAA PF00004.29 BAD85220.1 - 5.1e-06 26.9 0.2 0.066 13.6 0.0 2.7 2 1 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Fer4_21 PF14697.6 BAD85220.1 - 1.1e-05 25.5 10.3 2.8e-05 24.2 10.3 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain AAA_24 PF13479.6 BAD85220.1 - 1.6e-05 24.7 0.2 0.038 13.7 0.1 2.6 2 0 0 2 2 2 2 AAA domain AAA_15 PF13175.6 BAD85220.1 - 2.1e-05 24.4 3.5 0.42 10.3 0.0 4.2 3 1 0 4 4 4 1 AAA ATPase domain Fer4_9 PF13187.6 BAD85220.1 - 2.8e-05 24.2 6.5 6.5e-05 23.0 6.5 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 BAD85220.1 - 3.1e-05 24.0 10.2 0.00066 19.7 10.7 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 BAD85220.1 - 5e-05 23.8 10.7 0.0019 18.7 11.9 2.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain AAA_16 PF13191.6 BAD85220.1 - 0.00015 22.2 0.0 0.64 10.4 0.0 2.6 2 1 0 2 2 2 2 AAA ATPase domain AAA_18 PF13238.6 BAD85220.1 - 0.00018 22.1 0.6 0.033 14.7 0.0 3.0 3 1 0 3 3 2 1 AAA domain Fer4_2 PF12797.7 BAD85220.1 - 0.00018 21.4 12.1 0.003 17.6 2.2 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain RNA_helicase PF00910.22 BAD85220.1 - 0.00056 20.3 0.1 1.7 9.1 0.0 2.6 2 0 0 2 2 2 2 RNA helicase AAA_33 PF13671.6 BAD85220.1 - 0.0009 19.4 1.8 0.65 10.2 0.1 2.8 2 1 0 2 2 2 2 AAA domain dNK PF01712.19 BAD85220.1 - 0.0014 18.5 0.3 0.25 11.1 0.0 2.4 2 0 0 2 2 2 1 Deoxynucleoside kinase AAA_14 PF13173.6 BAD85220.1 - 0.0015 18.6 0.4 2.3 8.3 0.0 3.5 3 0 0 3 3 3 1 AAA domain AAA_28 PF13521.6 BAD85220.1 - 0.0026 18.0 0.1 3.2 8.0 0.0 2.7 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 BAD85220.1 - 0.0028 17.9 0.1 2.8 8.2 0.0 2.9 3 0 0 3 3 2 1 AAA domain NACHT PF05729.12 BAD85220.1 - 0.0029 17.5 0.9 0.5 10.3 0.1 3.0 3 0 0 3 3 2 1 NACHT domain AAA_30 PF13604.6 BAD85220.1 - 0.0053 16.5 2.2 0.76 9.5 0.1 2.8 2 1 0 2 2 2 1 AAA domain AAA_29 PF13555.6 BAD85220.1 - 0.01 15.5 0.4 6.4 6.6 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 BAD85220.1 - 0.011 15.6 0.1 0.87 9.5 0.0 2.6 2 0 0 2 2 2 0 RsgA GTPase NB-ARC PF00931.22 BAD85220.1 - 0.013 14.7 0.1 1.4 8.1 0.0 2.4 2 0 0 2 2 2 0 NB-ARC domain Fer4_16 PF13484.6 BAD85220.1 - 0.016 16.2 10.1 0.065 14.2 3.3 2.5 1 1 2 3 3 3 0 4Fe-4S double cluster binding domain SRP54 PF00448.22 BAD85220.1 - 0.032 13.9 4.0 1 8.9 0.2 2.4 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain SbcCD_C PF13558.6 BAD85220.1 - 0.039 14.2 0.1 6.3 7.1 0.0 2.9 2 2 0 2 2 2 0 Putative exonuclease SbcCD, C subunit AAA_7 PF12775.7 BAD85220.1 - 0.04 13.4 0.1 4.8 6.7 0.0 2.3 2 0 0 2 2 2 0 P-loop containing dynein motor region TsaE PF02367.17 BAD85220.1 - 0.042 13.9 0.1 1.8 8.6 0.0 2.4 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ATP_bind_1 PF03029.17 BAD85220.1 - 0.086 12.6 0.6 7.1 6.3 0.1 2.4 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_5 PF07728.14 BAD85220.1 - 0.097 12.7 1.2 21 5.1 0.0 2.9 3 0 0 3 3 2 0 AAA domain (dynein-related subfamily) MobB PF03205.14 BAD85220.1 - 0.1 12.5 0.8 6.7 6.6 0.1 2.8 3 0 0 3 3 2 0 Molybdopterin guanine dinucleotide synthesis protein B VirE PF05272.11 BAD85220.1 - 0.11 12.2 0.0 5.2 6.7 0.0 2.3 2 0 0 2 2 2 0 Virulence-associated protein E MMR_HSR1 PF01926.23 BAD85220.1 - 0.18 11.9 1.2 2.5 8.2 0.0 2.7 2 1 0 2 2 2 0 50S ribosome-binding GTPase PhoH PF02562.16 BAD85220.1 - 0.18 11.2 0.4 21 4.5 0.1 2.5 2 0 0 2 2 2 0 PhoH-like protein DLIC PF05783.11 BAD85220.1 - 0.22 10.3 0.7 2 7.2 0.1 2.0 2 0 0 2 2 2 0 Dynein light intermediate chain (DLIC) AAA_23 PF13476.6 BAD85220.1 - 0.22 12.0 14.2 0.3 11.6 0.5 3.2 2 2 0 2 2 2 0 AAA domain AAA_13 PF13166.6 BAD85220.1 - 0.23 10.1 0.4 11 4.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain Fer4_3 PF12798.7 BAD85220.1 - 0.24 12.4 17.5 1 10.4 5.5 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.7 BAD85220.1 - 0.45 11.2 13.8 0.77 10.4 3.6 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Spore_IV_A PF09547.10 BAD85220.1 - 0.64 8.9 1.9 11 4.8 0.3 2.5 3 0 0 3 3 3 0 Stage IV sporulation protein A (spore_IV_A) NTPase_1 PF03266.15 BAD85220.1 - 0.65 9.9 7.5 2.6 7.9 0.2 3.5 4 0 0 4 4 3 0 NTPase AAA_19 PF13245.6 BAD85220.1 - 0.7 10.2 4.7 11 6.4 0.2 3.0 4 0 0 4 4 2 0 AAA domain Fer4_17 PF13534.6 BAD85220.1 - 0.97 10.0 9.4 0.42 11.2 2.7 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain DUF87 PF01935.17 BAD85220.1 - 1.2 9.1 4.3 7.1 6.6 0.2 2.9 2 1 1 3 3 3 0 Helicase HerA, central domain Fer4_8 PF13183.6 BAD85220.1 - 8.1 7.0 12.1 2 8.9 3.7 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain AIRS_C PF02769.22 BAD85221.1 - 5e-25 88.5 0.1 7.5e-25 87.9 0.1 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 BAD85221.1 - 2.6e-16 60.0 0.0 5.5e-16 59.0 0.0 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain Prok-JAB PF14464.6 BAD85222.1 - 5.2e-18 64.9 0.0 6.1e-18 64.7 0.0 1.0 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain JAB PF01398.21 BAD85222.1 - 0.00042 20.3 0.0 0.00061 19.7 0.0 1.2 1 0 0 1 1 1 1 JAB1/Mov34/MPN/PAD-1 ubiquitin protease DUF4329 PF14220.6 BAD85222.1 - 0.0051 16.8 0.0 0.009 16.0 0.0 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4329) HSDR_N PF04313.14 BAD85223.1 - 5.3e-11 42.8 0.2 9.6e-07 28.9 0.0 2.5 1 1 1 2 2 2 2 Type I restriction enzyme R protein N terminus (HSDR_N) HSDR_N_2 PF13588.6 BAD85223.1 - 8.1e-08 32.2 0.0 1.6e-07 31.3 0.0 1.4 1 0 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) PDDEXK_9 PF08011.11 BAD85223.1 - 0.015 15.2 0.0 0.033 14.1 0.0 1.6 1 0 0 1 1 1 0 PD-(D/E)XK nuclease superfamily PriA_3primeBD PF17764.1 BAD85223.1 - 0.083 12.8 0.0 0.21 11.5 0.0 1.6 1 0 0 1 1 1 0 3′ DNA-binding domain (3′BD) FumaraseC_C PF10415.9 BAD85223.1 - 0.23 11.9 1.0 0.71 10.3 0.1 2.4 2 1 0 2 2 2 0 Fumarase C C-terminus GATase_4 PF13230.6 BAD85224.1 - 2.6e-09 36.4 0.1 2e-08 33.5 0.1 2.0 1 1 0 1 1 1 1 Glutamine amidotransferases class-II GATase_6 PF13522.6 BAD85224.1 - 1.5e-07 31.6 0.0 2.5e-07 31.0 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain CBS PF00571.28 BAD85225.1 - 8.9e-28 96.5 5.6 3.7e-15 56.1 0.3 2.1 2 0 0 2 2 2 2 CBS domain DUF3659 PF12396.8 BAD85225.1 - 0.018 15.0 2.3 0.21 11.5 0.2 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF3659) Metallophos PF00149.28 BAD85226.1 - 5.4e-29 102.2 8.6 4.4e-21 76.3 3.6 2.7 2 1 0 2 2 2 2 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 BAD85226.1 - 4.6e-21 75.7 1.7 4.7e-12 46.4 0.6 2.6 2 1 0 2 2 2 2 Calcineurin-like phosphoesterase superfamily domain PhoD PF09423.10 BAD85226.1 - 0.012 14.6 0.1 10 5.1 0.0 3.0 3 0 0 3 3 3 0 PhoD-like phosphatase ATP-cone PF03477.16 BAD85227.1 - 7e-10 39.3 0.3 7.7e-09 36.0 0.0 2.5 2 0 0 2 2 2 1 ATP cone domain AAA_18 PF13238.6 BAD85227.1 - 4.6e-05 24.0 0.0 0.00014 22.4 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 BAD85227.1 - 0.00013 22.2 4.7 0.0014 18.9 0.1 2.6 3 0 0 3 3 3 1 AAA domain AAA_33 PF13671.6 BAD85227.1 - 0.00015 21.9 0.0 0.0017 18.5 0.0 2.2 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 BAD85227.1 - 0.0024 17.2 0.1 0.024 13.9 0.0 2.3 3 0 0 3 3 3 1 Zeta toxin AAA_5 PF07728.14 BAD85227.1 - 0.0095 15.9 0.7 0.064 13.3 0.1 2.5 3 0 0 3 3 3 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 BAD85227.1 - 0.014 15.8 0.0 0.025 14.9 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain AAA_25 PF13481.6 BAD85227.1 - 0.015 14.9 0.0 0.047 13.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.6 BAD85227.1 - 0.017 15.5 0.0 0.079 13.4 0.0 2.1 1 1 0 1 1 1 0 AAA domain G-alpha PF00503.20 BAD85227.1 - 0.042 13.0 0.0 0.057 12.6 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit ParA PF10609.9 BAD85227.1 - 0.059 12.8 0.2 0.15 11.5 0.2 1.6 1 0 0 1 1 1 0 NUBPL iron-transfer P-loop NTPase Cytidylate_kin2 PF13189.6 BAD85227.1 - 0.06 13.5 0.2 0.4 10.8 0.0 2.2 2 0 0 2 2 2 0 Cytidylate kinase-like family AAA PF00004.29 BAD85227.1 - 0.072 13.5 0.0 0.19 12.1 0.0 1.8 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 BAD85227.1 - 0.11 12.4 0.0 0.18 11.7 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_29 PF13555.6 BAD85227.1 - 0.11 12.2 0.0 0.24 11.2 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain RNA_helicase PF00910.22 BAD85227.1 - 0.22 12.0 0.1 0.79 10.1 0.0 2.0 2 0 0 2 2 2 0 RNA helicase CbiA PF01656.23 BAD85227.1 - 0.48 10.5 5.1 0.18 11.9 0.8 2.4 3 0 0 3 3 3 0 CobQ/CobB/MinD/ParA nucleotide binding domain DUF1611 PF07755.11 BAD85228.1 - 0.023 14.0 0.1 0.47 9.7 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1611_C) P-loop domain cobW PF02492.19 BAD85228.1 - 0.032 13.8 0.0 0.16 11.5 0.0 2.2 2 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_26 PF13500.6 BAD85228.1 - 0.065 13.0 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain CBFD_NFYB_HMF PF00808.23 BAD85229.1 - 0.0012 19.0 0.6 0.0026 18.0 0.6 1.6 1 1 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone DctP PF03480.13 BAD85229.1 - 0.035 13.4 0.0 0.035 13.4 0.0 1.1 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein, family 7 TFIID_20kDa PF03847.13 BAD85229.1 - 0.064 13.8 0.0 0.073 13.6 0.0 1.1 1 0 0 1 1 1 0 Transcription initiation factor TFIID subunit A HTH_5 PF01022.20 BAD85230.1 - 4.4e-14 52.1 0.0 1e-13 50.9 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 BAD85230.1 - 1.2e-13 50.8 0.1 3.7e-12 46.1 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.19 BAD85230.1 - 5.3e-06 26.2 0.0 2.1e-05 24.3 0.0 1.9 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 BAD85230.1 - 3.1e-05 23.7 0.0 7.8e-05 22.4 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 BAD85230.1 - 0.00013 21.7 0.0 0.00021 21.1 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR PF01047.22 BAD85230.1 - 0.00017 21.5 0.0 0.00036 20.4 0.0 1.6 1 0 0 1 1 1 1 MarR family HxlR PF01638.17 BAD85230.1 - 0.00067 19.5 0.4 0.0089 15.9 0.0 2.6 1 1 2 3 3 3 1 HxlR-like helix-turn-helix HTH_24 PF13412.6 BAD85230.1 - 0.0014 18.1 0.0 0.0043 16.6 0.0 1.9 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_38 PF13936.6 BAD85230.1 - 0.0015 18.3 0.0 0.0027 17.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 BAD85230.1 - 0.019 14.9 0.1 0.15 12.0 0.0 2.3 2 0 0 2 2 2 0 HTH domain RuvB_C PF05491.13 BAD85230.1 - 0.023 14.6 0.0 0.047 13.6 0.0 1.6 1 0 0 1 1 1 0 RuvB C-terminal winged helix domain Fe_dep_repress PF01325.19 BAD85230.1 - 0.03 14.5 0.1 0.06 13.6 0.1 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain LexA_DNA_bind PF01726.16 BAD85230.1 - 0.031 14.1 0.2 0.14 11.9 0.0 2.1 2 0 0 2 2 2 0 LexA DNA binding domain DUF4423 PF14394.6 BAD85230.1 - 0.043 13.5 0.1 0.17 11.6 0.0 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4423) HTH_34 PF13601.6 BAD85230.1 - 0.043 14.0 0.0 0.1 12.8 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain DprA_WH PF17782.1 BAD85230.1 - 0.076 13.1 0.0 0.3 11.2 0.0 1.9 2 0 0 2 2 2 0 DprA winged helix domain HTH_23 PF13384.6 BAD85230.1 - 0.11 12.3 0.0 0.58 10.0 0.0 2.2 3 0 0 3 3 3 0 Homeodomain-like domain HTH_36 PF13730.6 BAD85230.1 - 0.12 12.4 0.0 1.2 9.1 0.0 2.4 1 1 1 2 2 2 0 Helix-turn-helix domain FecR PF04773.13 BAD85231.1 - 0.039 14.6 1.3 13 6.4 0.0 2.9 2 1 1 3 3 3 0 FecR protein DUF4097 PF13349.6 BAD85232.1 - 3e-13 49.7 0.2 4.7e-07 29.4 0.1 2.1 1 1 1 2 2 2 2 Putative adhesin Ectoine_synth PF06339.12 BAD85232.1 - 0.015 15.4 0.3 0.14 12.3 0.1 2.0 2 0 0 2 2 2 0 Ectoine synthase DUF961 PF06125.11 BAD85232.1 - 0.017 15.5 0.1 0.074 13.4 0.1 2.2 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF961) Bactofilin PF04519.13 BAD85232.1 - 0.03 14.6 7.8 0.042 14.1 0.6 3.5 2 1 0 3 3 3 0 Polymer-forming cytoskeletal Asp_protease_2 PF13650.6 BAD85232.1 - 0.061 14.0 0.2 0.33 11.6 0.0 2.3 2 1 0 2 2 2 0 Aspartyl protease MFS_1 PF07690.16 BAD85233.1 - 5e-34 117.8 29.2 5e-34 117.8 29.2 1.8 1 1 1 2 2 2 1 Major Facilitator Superfamily MFS_3 PF05977.13 BAD85233.1 - 4.4e-21 74.9 17.4 5.6e-21 74.5 17.4 1.0 1 0 0 1 1 1 1 Transmembrane secretion effector MFS_2 PF13347.6 BAD85233.1 - 2.2e-14 52.9 25.5 9e-14 50.9 6.2 2.4 1 1 1 2 2 2 2 MFS/sugar transport protein ATG22 PF11700.8 BAD85233.1 - 0.00015 20.6 0.5 0.00015 20.6 0.5 1.8 1 1 0 2 2 2 1 Vacuole effluxer Atg22 like Cob_adeno_trans PF01923.18 BAD85234.1 - 6e-51 172.8 0.0 6.7e-51 172.7 0.0 1.0 1 0 0 1 1 1 1 Cobalamin adenosyltransferase ABC_transp_aux PF09822.9 BAD85235.1 - 3.2e-08 33.4 0.0 9e-08 31.9 0.0 1.8 1 0 0 1 1 1 1 ABC-type uncharacterized transport system TGFb_propeptide PF00688.18 BAD85235.1 - 8.3e-07 29.0 0.0 0.051 13.3 0.0 2.2 2 0 0 2 2 2 2 TGF-beta propeptide ThuA PF06283.11 BAD85235.1 - 9.5e-07 29.2 0.0 3.3e-06 27.4 0.0 1.9 1 0 0 1 1 1 1 Trehalose utilisation Disaggr_repeat PF06848.11 BAD85235.1 - 1.1e-06 28.5 9.1 4.5e-05 23.2 3.0 4.3 3 1 0 3 3 3 1 Disaggregatase related repeat ASH PF15780.5 BAD85235.1 - 0.0001 22.5 0.1 0.03 14.5 0.1 3.2 1 1 1 2 2 2 1 Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin Glyco_hydro_2 PF00703.21 BAD85235.1 - 0.00071 20.2 1.0 0.0042 17.8 0.2 2.8 2 0 0 2 2 1 1 Glycosyl hydrolases family 2 Y_Y_Y PF07495.13 BAD85235.1 - 0.0009 19.1 0.1 0.0054 16.7 0.1 2.4 1 0 0 1 1 1 1 Y_Y_Y domain DUF4159 PF13709.6 BAD85235.1 - 0.0016 17.9 0.0 0.0084 15.5 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4159) FlgD_ig PF13860.6 BAD85235.1 - 0.0029 17.4 0.1 0.018 14.9 0.1 2.4 1 0 0 1 1 1 1 FlgD Ig-like domain DUF4350 PF14258.6 BAD85235.1 - 0.011 16.2 0.0 0.065 13.7 0.0 2.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4350) DUF3426 PF11906.8 BAD85235.1 - 0.068 13.3 0.0 11 6.2 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3426) IF-2B PF01008.17 BAD85236.1 - 1.4e-52 178.7 0.0 3.5e-52 177.4 0.0 1.6 1 1 0 1 1 1 1 Initiation factor 2 subunit family ATPase PF06745.13 BAD85237.1 - 1.6e-51 174.9 0.2 1.8e-51 174.8 0.2 1.0 1 0 0 1 1 1 1 KaiC GvpD PF07088.11 BAD85237.1 - 8.2e-12 44.5 0.6 1.1e-10 40.8 0.6 2.1 1 1 0 1 1 1 1 GvpD gas vesicle protein AAA_25 PF13481.6 BAD85237.1 - 3.6e-10 39.8 0.0 5.2e-10 39.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain MEDS PF14417.6 BAD85237.1 - 9.7e-07 28.8 0.0 0.0048 16.7 0.0 2.1 1 1 1 2 2 2 2 MEDS: MEthanogen/methylotroph, DcmR Sensory domain IstB_IS21 PF01695.17 BAD85237.1 - 1.1e-06 28.4 0.4 1.3e-05 25.0 0.0 2.2 2 1 0 2 2 2 1 IstB-like ATP binding protein PAXNEB PF05625.11 BAD85237.1 - 6.7e-06 25.5 0.7 0.0042 16.3 0.0 2.4 1 1 1 2 2 2 2 PAXNEB protein AAA_24 PF13479.6 BAD85237.1 - 1.1e-05 25.2 1.1 0.00016 21.4 0.2 2.2 1 1 1 2 2 2 1 AAA domain DnaB_C PF03796.15 BAD85237.1 - 1.5e-05 24.5 0.0 2.4e-05 23.8 0.0 1.5 1 1 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_14 PF13173.6 BAD85237.1 - 2e-05 24.7 0.1 0.00022 21.3 0.1 2.2 1 1 0 1 1 1 1 AAA domain Rad51 PF08423.11 BAD85237.1 - 6.8e-05 22.2 0.2 0.00062 19.1 0.3 1.9 1 1 0 1 1 1 1 Rad51 NACHT PF05729.12 BAD85237.1 - 0.00021 21.2 0.4 0.011 15.7 0.1 2.2 2 0 0 2 2 2 1 NACHT domain AAA_5 PF07728.14 BAD85237.1 - 0.00053 20.0 0.0 0.0013 18.7 0.0 1.6 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_30 PF13604.6 BAD85237.1 - 0.0006 19.6 0.0 0.0022 17.7 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.6 BAD85237.1 - 0.00086 19.7 0.1 0.0019 18.5 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 BAD85237.1 - 0.0012 19.1 0.0 0.0027 18.0 0.0 1.5 1 1 0 1 1 1 1 AAA domain DUF2075 PF09848.9 BAD85237.1 - 0.0012 18.1 0.6 0.0088 15.3 0.1 2.0 1 1 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) AAA_18 PF13238.6 BAD85237.1 - 0.0034 17.9 0.0 0.0048 17.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.6 BAD85237.1 - 0.0035 17.6 0.0 0.011 16.0 0.0 1.7 1 1 1 2 2 2 1 AAA domain ATPase_2 PF01637.18 BAD85237.1 - 0.0056 16.6 0.1 0.0073 16.2 0.1 1.1 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea RecA PF00154.21 BAD85237.1 - 0.0066 15.9 0.1 0.011 15.3 0.1 1.3 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA PF00004.29 BAD85237.1 - 0.0087 16.5 0.9 0.019 15.4 0.9 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TIP49 PF06068.13 BAD85237.1 - 0.015 14.5 0.1 0.023 13.9 0.1 1.3 1 0 0 1 1 1 0 TIP49 P-loop domain AAA_16 PF13191.6 BAD85237.1 - 0.017 15.5 0.1 0.027 14.9 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain ABC_tran PF00005.27 BAD85237.1 - 0.04 14.4 0.0 0.051 14.1 0.0 1.2 1 0 0 1 1 1 0 ABC transporter PhoH PF02562.16 BAD85237.1 - 0.056 12.9 0.3 0.24 10.8 0.0 2.0 2 1 0 2 2 2 0 PhoH-like protein MipZ PF09140.11 BAD85237.1 - 0.061 12.6 0.0 0.085 12.1 0.0 1.3 1 0 0 1 1 1 0 ATPase MipZ DAP3 PF10236.9 BAD85237.1 - 0.072 12.2 0.1 0.43 9.7 0.0 2.1 2 1 1 3 3 3 0 Mitochondrial ribosomal death-associated protein 3 CobA_CobO_BtuR PF02572.15 BAD85237.1 - 0.074 13.3 0.0 0.12 12.6 0.0 1.3 1 0 0 1 1 1 0 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP AAA_33 PF13671.6 BAD85237.1 - 0.095 12.9 0.2 0.12 12.5 0.2 1.5 1 1 0 1 1 1 0 AAA domain Viral_helicase1 PF01443.18 BAD85237.1 - 0.13 11.9 0.6 1 9.1 0.1 2.1 1 1 0 2 2 2 0 Viral (Superfamily 1) RNA helicase ResIII PF04851.15 BAD85237.1 - 0.27 11.2 1.4 0.5 10.4 1.4 1.5 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit tRNA-synt_1g PF09334.11 BAD85238.1 - 1.4e-161 537.6 0.0 1.8e-161 537.3 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA_bind PF01588.20 BAD85238.1 - 4.8e-32 109.9 0.0 8.5e-32 109.1 0.0 1.4 1 0 0 1 1 1 1 Putative tRNA binding domain tRNA-synt_1 PF00133.22 BAD85238.1 - 2.2e-16 59.2 0.9 4.3e-08 31.9 0.0 3.7 3 1 1 4 4 4 2 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 BAD85238.1 - 5e-15 55.8 0.1 1.1e-14 54.7 0.1 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.19 BAD85238.1 - 0.0014 18.0 0.0 1.9 7.7 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain DZR PF12773.7 BAD85238.1 - 0.016 15.2 4.5 0.031 14.3 4.5 1.4 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.6 BAD85238.1 - 0.21 11.1 10.7 3.7 7.1 5.0 3.0 2 1 1 3 3 3 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 BAD85238.1 - 0.77 9.6 10.5 0.54 10.0 4.9 3.1 2 1 0 2 2 2 0 zinc-ribbon domain Cys_rich_CPXG PF14255.6 BAD85238.1 - 5.7 6.9 8.6 3.3e+03 -1.9 8.6 3.3 1 1 0 1 1 1 0 Cysteine-rich CPXCG TrmB PF01978.19 BAD85239.1 - 1.6e-06 27.9 0.0 3.3e-06 26.9 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 BAD85239.1 - 3.4e-06 26.8 0.0 7.4e-06 25.8 0.0 1.5 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.19 BAD85239.1 - 6.3e-05 23.1 0.0 0.00015 21.8 0.0 1.7 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_24 PF13412.6 BAD85239.1 - 0.00015 21.3 0.0 0.00026 20.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 BAD85239.1 - 0.0012 18.7 0.0 0.0027 17.6 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 BAD85239.1 - 0.0018 18.0 0.0 0.0036 17.1 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain DUF4366 PF14283.6 BAD85239.1 - 0.0056 16.7 0.0 0.01 15.9 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4366) Podoplanin PF05808.11 BAD85239.1 - 0.017 15.2 4.0 0.034 14.2 4.0 1.4 1 0 0 1 1 1 0 Podoplanin DUF4897 PF16238.5 BAD85239.1 - 0.053 13.4 1.3 0.26 11.1 0.2 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4897) Penicillinase_R PF03965.16 BAD85239.1 - 0.071 13.5 0.0 0.15 12.4 0.0 1.5 1 0 0 1 1 1 0 Penicillinase repressor Orf78 PF06024.12 BAD85239.1 - 0.078 13.3 0.4 0.43 10.9 0.0 2.2 2 1 0 2 2 2 0 Orf78 (ac78) Rrf2 PF02082.20 BAD85239.1 - 0.13 12.7 0.0 0.43 11.0 0.0 1.9 1 0 0 1 1 1 0 Transcriptional regulator Uteroglobin PF01099.17 BAD85239.1 - 0.17 12.2 0.1 2.1 8.7 0.0 2.3 2 1 0 2 2 2 0 Uteroglobin family HTH_DeoR PF08220.12 BAD85239.1 - 0.18 11.6 0.0 11 5.8 0.0 2.3 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain TMEM154 PF15102.6 BAD85239.1 - 0.56 10.1 8.1 0.16 11.9 0.9 2.3 2 0 0 2 2 2 0 TMEM154 protein family FCD PF07729.12 BAD85240.1 - 0.011 16.1 1.1 2.8 8.4 0.4 2.5 1 1 1 2 2 2 0 FCD domain HTH_WhiA PF02650.14 BAD85240.1 - 0.038 14.3 1.5 0.15 12.4 0.8 2.5 2 0 0 2 2 2 0 WhiA C-terminal HTH domain DUF5082 PF16888.5 BAD85240.1 - 0.042 14.1 2.1 0.22 11.8 1.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF5082) Fib_alpha PF08702.10 BAD85240.1 - 0.15 12.3 6.8 0.069 13.3 2.0 2.5 2 1 0 2 2 2 0 Fibrinogen alpha/beta chain family Phage_ABA_S PF18066.1 BAD85241.1 - 0.01 16.5 0.6 0.02 15.6 0.6 1.7 1 1 0 1 1 1 0 Phage ABA sandwich domain HAD PF12710.7 BAD85241.1 - 0.11 12.9 0.0 0.11 12.9 0.0 1.1 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase TauE PF01925.19 BAD85242.1 - 1.2e-56 192.0 29.4 1.4e-56 191.7 29.4 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE UPF0016 PF01169.19 BAD85242.1 - 0.017 15.5 0.6 0.017 15.5 0.6 3.4 2 2 1 3 3 3 0 Uncharacterized protein family UPF0016 TerC PF03741.16 BAD85242.1 - 0.1 12.3 5.3 1.5 8.5 5.3 2.7 1 1 0 1 1 1 0 Integral membrane protein TerC family Peptidase_M48_N PF16491.5 BAD85242.1 - 0.15 11.9 0.6 0.26 11.1 0.6 1.4 1 0 0 1 1 1 0 CAAX prenyl protease N-terminal, five membrane helices ATP1G1_PLM_MAT8 PF02038.16 BAD85242.1 - 10 5.7 6.0 2.9 7.4 0.1 3.0 3 0 0 3 3 3 0 ATP1G1/PLM/MAT8 family Acetyltransf_1 PF00583.25 BAD85243.1 - 2.8e-16 59.8 0.1 3.4e-16 59.5 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 BAD85243.1 - 9.8e-11 41.9 0.1 1.6e-10 41.3 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 BAD85243.1 - 7.9e-09 35.5 0.0 2.4e-08 34.0 0.0 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 BAD85243.1 - 2.8e-06 27.4 0.1 1.2e-05 25.4 0.1 2.1 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 BAD85243.1 - 0.0023 17.8 0.0 0.0038 17.2 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_15 PF17013.5 BAD85243.1 - 0.013 15.0 0.1 0.039 13.4 0.0 1.8 1 1 0 2 2 2 0 Putative acetyl-transferase Acetyltransf_CG PF14542.6 BAD85243.1 - 0.048 13.8 0.0 0.082 13.1 0.0 1.5 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.7 BAD85243.1 - 0.065 13.9 0.0 0.078 13.7 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain AhpC-TSA PF00578.21 BAD85244.1 - 2.3e-34 118.0 0.0 2.8e-34 117.7 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 BAD85244.1 - 5.7e-18 65.0 0.0 6.8e-18 64.8 0.0 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.6 BAD85244.1 - 1.4e-08 34.8 0.0 5.7e-08 32.9 0.0 1.7 1 1 0 1 1 1 1 AhpC/TSA antioxidant enzyme Thioredoxin_8 PF13905.6 BAD85244.1 - 0.00079 19.7 0.0 0.0011 19.2 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like DUF899 PF05988.12 BAD85244.1 - 0.0031 17.1 0.0 0.0036 16.9 0.0 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF899) SCO1-SenC PF02630.14 BAD85244.1 - 0.05 13.5 0.0 0.067 13.1 0.0 1.2 1 0 0 1 1 1 0 SCO1/SenC Rubrerythrin PF02915.17 BAD85245.1 - 5.7e-16 59.2 16.0 6.9e-16 58.9 16.0 1.1 1 0 0 1 1 1 1 Rubrerythrin Ferritin_2 PF13668.6 BAD85245.1 - 1e-06 29.0 4.3 0.011 15.9 0.4 2.1 2 0 0 2 2 2 2 Ferritin-like domain DUF2383 PF09537.10 BAD85245.1 - 0.00043 20.6 4.4 0.04 14.3 0.3 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF2383) Coat_F PF07875.12 BAD85245.1 - 0.0028 17.9 0.4 1.5 9.1 0.0 2.3 2 0 0 2 2 2 2 Coat F domain DUF2202 PF09968.9 BAD85245.1 - 0.0098 15.8 1.4 0.12 12.3 1.4 2.0 1 1 0 1 1 1 1 Uncharacterized protein domain (DUF2202) DUF4439 PF14530.6 BAD85245.1 - 0.28 11.9 1.8 1.1 9.9 0.1 2.1 1 1 2 3 3 3 0 Domain of unknown function (DUF4439) FUR PF01475.19 BAD85246.1 - 3.4e-10 40.1 0.0 3.6e-10 40.0 0.0 1.0 1 0 0 1 1 1 1 Ferric uptake regulator family FUR PF01475.19 BAD85247.1 - 0.0002 21.5 0.0 0.00023 21.3 0.0 1.1 1 0 0 1 1 1 1 Ferric uptake regulator family Ferritin PF00210.24 BAD85248.1 - 1.3e-22 80.3 0.1 1.6e-22 80.0 0.1 1.1 1 0 0 1 1 1 1 Ferritin-like domain Ferritin_2 PF13668.6 BAD85248.1 - 0.0012 19.0 0.0 0.0017 18.5 0.0 1.2 1 0 0 1 1 1 1 Ferritin-like domain Rubrerythrin PF02915.17 BAD85248.1 - 0.0061 16.9 1.8 0.067 13.6 2.2 2.0 1 1 1 2 2 2 2 Rubrerythrin COQ7 PF03232.13 BAD85248.1 - 0.0087 15.8 0.0 0.025 14.4 0.0 1.7 2 0 0 2 2 2 1 Ubiquinone biosynthesis protein COQ7 Rubrerythrin PF02915.17 BAD85249.1 - 6.5e-08 33.1 4.1 8e-08 32.8 4.1 1.1 1 0 0 1 1 1 1 Rubrerythrin DUF2383 PF09537.10 BAD85249.1 - 3e-05 24.3 0.6 6.5e-05 23.2 0.6 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF2383) DUF3231 PF11553.8 BAD85249.1 - 0.0058 16.3 0.1 0.01 15.5 0.1 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF3231) DUF455 PF04305.14 BAD85249.1 - 0.014 14.9 0.3 0.017 14.7 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF455) Ferritin PF00210.24 BAD85249.1 - 0.026 14.4 2.6 0.046 13.6 2.6 1.4 1 1 0 1 1 1 0 Ferritin-like domain COQ7 PF03232.13 BAD85249.1 - 0.039 13.7 0.3 0.045 13.5 0.3 1.2 1 0 0 1 1 1 0 Ubiquinone biosynthesis protein COQ7 Rubrerythrin PF02915.17 BAD85250.1 - 8e-05 23.1 1.8 9.7e-05 22.8 1.8 1.2 1 0 0 1 1 1 1 Rubrerythrin DUF2383 PF09537.10 BAD85250.1 - 0.00071 19.9 0.1 0.0011 19.2 0.1 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF2383) DUF1104 PF06518.11 BAD85250.1 - 0.071 13.5 1.5 0.1 13.0 1.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1104) Rubrerythrin PF02915.17 BAD85251.1 - 6.6e-13 49.2 2.8 7.9e-13 49.0 2.8 1.1 1 0 0 1 1 1 1 Rubrerythrin Ferritin_2 PF13668.6 BAD85251.1 - 0.00074 19.7 0.0 0.001 19.3 0.0 1.2 1 0 0 1 1 1 1 Ferritin-like domain DUF2383 PF09537.10 BAD85251.1 - 0.0049 17.2 1.2 0.45 10.9 0.5 2.4 2 1 0 2 2 2 2 Domain of unknown function (DUF2383) FISNA PF14484.6 BAD85251.1 - 0.099 12.9 1.5 0.18 12.1 0.5 2.0 2 1 0 2 2 2 0 Fish-specific NACHT associated domain MS_channel PF00924.18 BAD85252.1 - 1e-49 168.9 1.0 1.6e-49 168.3 1.0 1.3 1 0 0 1 1 1 1 Mechanosensitive ion channel TM_helix PF05552.12 BAD85252.1 - 1.7e-06 27.9 2.0 1.7e-06 27.9 2.0 2.5 3 0 0 3 3 3 1 Conserved TM helix SPASM PF13186.6 BAD85253.1 - 4.4e-17 62.4 0.8 4.4e-17 62.4 0.8 2.5 3 0 0 3 3 3 1 Iron-sulfur cluster-binding domain Radical_SAM PF04055.21 BAD85253.1 - 4.6e-17 62.9 0.1 6.4e-17 62.4 0.1 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 BAD85253.1 - 2.6e-07 30.8 0.0 6.6e-07 29.5 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 BAD85253.1 - 3.5e-07 30.6 0.1 4e-06 27.1 0.0 2.2 2 0 0 2 2 2 1 4Fe-4S single cluster domain HAD PF12710.7 BAD85253.1 - 0.15 12.4 0.0 0.26 11.7 0.0 1.4 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase ThiS PF02597.20 BAD85254.1 - 9.9e-22 77.4 0.0 1.1e-21 77.2 0.0 1.0 1 0 0 1 1 1 1 ThiS family Urm1 PF09138.11 BAD85254.1 - 0.0015 18.8 0.0 0.0016 18.8 0.0 1.2 1 0 0 1 1 1 1 Urm1 (Ubiquitin related modifier) TGS PF02824.21 BAD85254.1 - 0.013 15.5 0.0 0.019 15.0 0.0 1.4 1 0 0 1 1 1 0 TGS domain AFOR_C PF01314.18 BAD85255.1 - 2.8e-143 477.6 0.0 3.7e-143 477.2 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 BAD85255.1 - 1.6e-83 279.4 0.6 2.3e-83 279.0 0.6 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Nre_N PF04894.12 BAD85256.1 - 1.1e-103 346.9 0.0 1.3e-103 346.5 0.0 1.1 1 0 0 1 1 1 1 Archaeal Nre, N-terminal Nre_C PF04895.12 BAD85256.1 - 9.8e-38 128.5 0.3 1.5e-37 127.9 0.3 1.3 1 0 0 1 1 1 1 Archaeal Nre, C-terminal YabA PF06156.13 BAD85257.1 - 0.04 14.6 1.5 0.043 14.5 1.5 1.1 1 0 0 1 1 1 0 Initiation control protein YabA Matrilin_ccoil PF10393.9 BAD85257.1 - 0.051 13.4 0.5 0.083 12.8 0.5 1.3 1 0 0 1 1 1 0 Trimeric coiled-coil oligomerisation domain of matrilin MtrG PF04210.13 BAD85257.1 - 0.15 11.9 0.7 0.24 11.3 0.7 1.4 1 0 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase, subunit G DUF5446 PF17522.2 BAD85257.1 - 0.26 11.5 7.3 0.3 11.3 7.3 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5446) YvrJ PF12841.7 BAD85257.1 - 1.1 8.8 5.2 8.6 6.0 5.2 2.2 1 1 0 1 1 1 0 YvrJ protein family PemK_toxin PF02452.17 BAD85258.1 - 8.9e-13 48.6 0.0 9.8e-13 48.5 0.0 1.0 1 0 0 1 1 1 1 PemK-like, MazF-like toxin of type II toxin-antitoxin system TolA_bind_tri PF16331.5 BAD85259.1 - 0.00015 21.8 2.4 0.00017 21.6 2.4 1.1 1 0 0 1 1 1 1 TolA binding protein trimerisation Helo_like_N PF17111.5 BAD85259.1 - 0.00033 20.1 2.3 0.00033 20.1 2.3 1.0 1 0 0 1 1 1 1 Fungal N-terminal domain of STAND proteins DASH_Dad4 PF08650.10 BAD85259.1 - 0.0055 16.6 1.4 0.0061 16.5 1.4 1.2 1 0 0 1 1 1 1 DASH complex subunit Dad4 Rx_N PF18052.1 BAD85259.1 - 0.0062 16.8 6.0 0.0069 16.6 6.0 1.0 1 0 0 1 1 1 1 Rx N-terminal domain Vps51 PF08700.11 BAD85259.1 - 0.018 15.1 1.1 0.029 14.5 0.7 1.5 1 1 1 2 2 2 0 Vps51/Vps67 SKA2 PF16740.5 BAD85259.1 - 0.024 14.4 4.4 0.024 14.4 4.4 1.0 1 0 0 1 1 1 0 Spindle and kinetochore-associated protein 2 NPV_P10 PF05531.12 BAD85259.1 - 0.024 15.1 0.2 0.025 15.0 0.2 1.0 1 0 0 1 1 1 0 Nucleopolyhedrovirus P10 protein Ead_Ea22 PF13935.6 BAD85259.1 - 0.037 14.7 4.2 0.039 14.6 4.2 1.0 1 0 0 1 1 1 0 Ead/Ea22-like protein FlaC_arch PF05377.11 BAD85259.1 - 0.048 14.1 5.5 0.065 13.6 5.5 1.3 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) DUF1664 PF07889.12 BAD85259.1 - 0.051 13.6 1.8 0.048 13.7 1.8 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) DASH_Dam1 PF08653.10 BAD85259.1 - 0.075 12.8 0.5 0.24 11.2 0.2 1.7 1 1 1 2 2 2 0 DASH complex subunit Dam1 DUF3251 PF11622.8 BAD85259.1 - 0.13 11.8 1.0 0.15 11.7 1.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3251) Fzo_mitofusin PF04799.13 BAD85259.1 - 0.17 11.4 2.7 0.17 11.4 2.7 1.0 1 0 0 1 1 1 0 fzo-like conserved region Latarcin PF10279.9 BAD85259.1 - 0.35 11.3 6.0 0.39 11.1 6.0 1.1 1 0 0 1 1 1 0 Latarcin precursor Spc24 PF08286.11 BAD85259.1 - 0.49 10.7 6.6 0.5 10.6 6.6 1.1 1 0 0 1 1 1 0 Spc24 subunit of Ndc80 FapA PF03961.13 BAD85259.1 - 0.59 8.7 5.7 0.57 8.7 5.7 1.0 1 0 0 1 1 1 0 Flagellar Assembly Protein A Phosphodiest PF01663.22 BAD85260.1 - 7.6e-48 163.9 0.1 8.7e-48 163.7 0.1 1.0 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.23 BAD85260.1 - 1.6e-08 34.3 0.0 0.0048 16.3 0.0 2.3 1 1 0 2 2 2 2 Sulfatase Metalloenzyme PF01676.18 BAD85260.1 - 1.4e-07 31.2 0.0 9.4e-07 28.4 0.0 2.0 2 0 0 2 2 2 1 Metalloenzyme superfamily HEPN PF05168.14 BAD85261.1 - 7e-28 97.1 1.0 8.8e-28 96.8 1.0 1.0 1 0 0 1 1 1 1 HEPN domain PaREP1 PF05942.11 BAD85261.1 - 0.021 14.7 0.8 0.14 12.1 0.1 2.1 2 0 0 2 2 2 0 Archaeal PaREP1/PaREP8 family YaaC PF14175.6 BAD85261.1 - 0.029 13.6 0.0 0.054 12.7 0.0 1.4 1 0 0 1 1 1 0 YaaC-like Protein Laminin_I PF06008.14 BAD85261.1 - 0.076 12.7 0.9 1 9.0 0.2 2.0 2 0 0 2 2 2 0 Laminin Domain I NTP_transf_2 PF01909.23 BAD85262.1 - 5.4e-13 49.0 0.3 6.2e-13 48.9 0.3 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 BAD85262.1 - 9.1e-09 35.3 0.1 9.6e-09 35.2 0.1 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase SMODS PF18144.1 BAD85262.1 - 0.022 14.9 0.0 0.03 14.5 0.0 1.3 1 0 0 1 1 1 0 Second Messenger Oligonucleotide or Dinucleotide Synthetase domain DNA_pol_B_palm PF14792.6 BAD85262.1 - 0.18 12.0 0.0 0.18 12.0 0.0 1.3 1 0 0 1 1 1 0 DNA polymerase beta palm DUF3783 PF12646.7 BAD85263.1 - 4.8e-14 52.0 2.4 4.8e-13 48.8 0.1 2.3 3 0 0 3 3 3 1 Domain of unknown function (DUF3783) Peripla_BP_1 PF00532.21 BAD85263.1 - 0.036 13.5 0.0 0.047 13.1 0.0 1.1 1 0 0 1 1 1 0 Periplasmic binding proteins and sugar binding domain of LacI family MazE_antitoxin PF04014.18 BAD85265.1 - 5.8e-13 48.4 1.6 1.2e-12 47.4 1.6 1.6 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin AbrB-like PF14250.6 BAD85265.1 - 0.0032 17.5 0.0 0.0052 16.8 0.0 1.4 1 1 0 1 1 1 1 AbrB-like transcriptional regulator PrlF_antitoxin PF15937.5 BAD85265.1 - 0.021 15.3 0.0 0.022 15.2 0.0 1.2 1 1 0 1 1 1 0 prlF antitoxin for toxin YhaV_toxin CDC48_N PF02359.18 BAD85265.1 - 0.049 13.8 0.0 0.18 12.0 0.0 1.5 1 1 0 1 1 1 0 Cell division protein 48 (CDC48), N-terminal domain DUF1905 PF08922.11 BAD85265.1 - 0.086 12.9 0.1 0.26 11.4 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF1905) FeoA PF04023.14 BAD85265.1 - 0.13 12.5 0.1 0.13 12.5 0.1 2.1 2 1 1 3 3 3 0 FeoA domain Ribosomal_S7 PF00177.21 BAD85266.1 - 9.4e-39 132.4 3.0 1.3e-38 131.9 3.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e DUF4975 PF16346.5 BAD85266.1 - 0.12 12.4 0.0 0.2 11.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4975) Ribosom_S12_S23 PF00164.25 BAD85267.1 - 4e-51 171.4 1.8 5.1e-51 171.1 1.8 1.1 1 0 0 1 1 1 1 Ribosomal protein S12/S23 KH_2 PF07650.17 BAD85268.1 - 2e-21 75.6 3.8 4.2e-18 64.9 0.4 2.2 1 1 1 2 2 2 2 KH domain KH_5 PF13184.6 BAD85268.1 - 3e-07 30.4 0.7 5.5e-06 26.4 0.1 2.3 2 1 0 2 2 2 1 NusA-like KH domain KH_4 PF13083.6 BAD85268.1 - 4.4e-07 29.7 1.1 0.00019 21.3 0.1 2.1 2 0 0 2 2 2 2 KH domain KH_1 PF00013.29 BAD85268.1 - 0.0012 18.6 4.3 0.12 12.3 0.2 2.6 1 1 0 2 2 2 2 KH domain PfkB PF00294.24 BAD85268.1 - 0.026 13.9 0.0 0.029 13.7 0.0 1.1 1 0 0 1 1 1 0 pfkB family carbohydrate kinase Ribosomal_L7Ae PF01248.26 BAD85269.1 - 6.8e-20 70.6 0.0 7.5e-20 70.5 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family RNA_pol_Rpb1_5 PF04998.17 BAD85270.1 - 4.8e-56 190.1 0.9 6.9e-56 189.6 0.9 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 RNA_pol_Rpb1_1 PF04997.12 BAD85271.1 - 4.9e-108 361.1 0.0 6.9e-108 360.7 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.20 BAD85271.1 - 5.5e-74 247.9 0.0 9e-74 247.2 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.18 BAD85271.1 - 2.2e-38 131.7 0.0 3.9e-38 130.9 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_4 PF05000.17 BAD85271.1 - 4.1e-32 110.3 0.0 9.6e-32 109.2 0.0 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_5 PF04998.17 BAD85271.1 - 1.8e-29 103.0 0.0 4.4e-29 101.7 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 GAT PF03127.14 BAD85271.1 - 0.13 12.6 0.2 0.65 10.3 0.0 2.3 2 0 0 2 2 2 0 GAT domain zf-RING_7 PF02591.15 BAD85271.1 - 0.18 12.0 5.2 19 5.5 0.0 3.8 4 0 0 4 4 4 0 C4-type zinc ribbon domain zf-ribbon_3 PF13248.6 BAD85271.1 - 0.76 9.3 2.8 1.3 8.5 0.1 2.5 3 0 0 3 3 3 0 zinc-ribbon domain Nudix_N_2 PF14803.6 BAD85271.1 - 2.6 8.0 6.1 1.1 9.2 0.1 3.2 3 0 0 3 3 3 0 Nudix N-terminal RNA_pol_Rpb2_6 PF00562.28 BAD85272.1 - 3.8e-132 441.1 0.0 5.2e-132 440.6 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_1 PF04563.15 BAD85272.1 - 5.2e-54 182.8 0.0 8.1e-54 182.2 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.14 BAD85272.1 - 3.9e-41 140.8 0.1 7.9e-41 139.8 0.1 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_7 PF04560.20 BAD85272.1 - 5.1e-31 106.9 0.1 9.9e-31 106.0 0.1 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_3 PF04565.16 BAD85272.1 - 3.6e-30 103.9 0.0 7.4e-30 102.9 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_4 PF04566.13 BAD85272.1 - 8.6e-20 70.8 1.3 1.9e-19 69.7 1.3 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.17 BAD85272.1 - 4.9e-09 36.6 0.3 1.3e-08 35.2 0.3 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 NOB1_Zn_bind PF08772.11 BAD85272.1 - 0.018 15.2 1.0 0.028 14.6 0.1 1.8 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like Auto_anti-p27 PF06677.12 BAD85272.1 - 0.043 14.0 1.0 0.092 12.9 1.0 1.6 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) TF_Zn_Ribbon PF08271.12 BAD85272.1 - 0.063 12.8 2.1 1.2 8.7 1.8 2.6 1 1 1 2 2 2 0 TFIIB zinc-binding RNA_pol_Rpb5_C PF01191.19 BAD85273.1 - 2.3e-32 110.7 0.2 2.6e-32 110.5 0.2 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain Rad50_zn_hook PF04423.14 BAD85273.1 - 0.085 12.7 0.8 0.12 12.2 0.8 1.2 1 0 0 1 1 1 0 Rad50 zinc hook motif CDC48_N PF02359.18 BAD85273.1 - 0.15 12.3 0.0 1.3 9.3 0.0 1.9 1 1 1 2 2 2 0 Cell division protein 48 (CDC48), N-terminal domain Thioredoxin_3 PF13192.6 BAD85274.1 - 1.4e-22 79.6 0.0 2.4e-14 53.2 0.0 2.2 2 0 0 2 2 2 2 Thioredoxin domain Thioredoxin PF00085.20 BAD85274.1 - 2.4e-12 46.7 0.2 4.6e-05 23.3 0.0 2.1 2 0 0 2 2 2 2 Thioredoxin ABC_transp_aux PF09822.9 BAD85274.1 - 4.4e-11 42.7 0.0 4.5e-05 23.1 0.0 2.0 2 0 0 2 2 2 2 ABC-type uncharacterized transport system Thioredoxin_2 PF13098.6 BAD85274.1 - 4.9e-10 39.8 6.3 3.2e-05 24.3 0.2 3.6 2 2 0 2 2 2 2 Thioredoxin-like domain Glutaredoxin PF00462.24 BAD85274.1 - 1.3e-09 38.2 2.0 0.00013 22.1 0.3 2.6 2 1 0 2 2 2 2 Glutaredoxin TraF PF13728.6 BAD85274.1 - 4e-07 30.1 0.0 0.0034 17.2 0.0 2.2 2 0 0 2 2 2 2 F plasmid transfer operon protein DUF836 PF05768.14 BAD85274.1 - 2.7e-06 27.7 0.2 0.00018 21.8 0.2 2.3 2 0 0 2 2 2 1 Glutaredoxin-like domain (DUF836) Thioredoxin_9 PF14595.6 BAD85274.1 - 3.7e-05 23.5 0.1 0.0022 17.8 0.0 2.2 2 0 0 2 2 2 1 Thioredoxin Thioredoxin_8 PF13905.6 BAD85274.1 - 0.017 15.4 0.5 25 5.3 0.0 3.6 2 2 2 4 4 4 0 Thioredoxin-like DUF393 PF04134.12 BAD85274.1 - 0.019 16.3 0.0 0.12 13.7 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function, DUF393 HyaE PF07449.11 BAD85274.1 - 0.034 14.1 0.0 0.13 12.3 0.0 1.8 2 1 0 2 2 2 0 Hydrogenase-1 expression protein HyaE DUF2120 PF09893.9 BAD85274.1 - 0.07 13.2 0.0 0.14 12.3 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2120) TrbC_Ftype PF09673.10 BAD85274.1 - 0.14 12.3 0.0 12 6.0 0.0 2.4 2 1 0 2 2 2 0 Type-F conjugative transfer system pilin assembly protein HTH_20 PF12840.7 BAD85275.1 - 2e-10 40.5 0.3 3.2e-06 27.1 0.0 2.7 3 0 0 3 3 3 2 Helix-turn-helix domain HTH_24 PF13412.6 BAD85275.1 - 2.3e-07 30.3 0.7 0.0057 16.2 0.1 2.9 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 BAD85275.1 - 3.1e-06 27.0 0.8 0.00066 19.5 0.2 2.5 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family MarR PF01047.22 BAD85275.1 - 3e-05 23.9 0.0 0.0041 17.0 0.0 2.5 2 0 0 2 2 2 1 MarR family HTH_11 PF08279.12 BAD85275.1 - 0.0009 19.1 0.1 0.24 11.4 0.0 2.6 2 0 0 2 2 2 1 HTH domain HTH_34 PF13601.6 BAD85275.1 - 0.0035 17.5 0.3 0.76 10.0 0.0 2.7 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_AsnC-type PF13404.6 BAD85275.1 - 0.0038 17.0 0.2 0.013 15.4 0.1 2.0 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain FUR PF01475.19 BAD85275.1 - 0.0087 16.2 0.1 0.038 14.1 0.0 1.9 2 0 0 2 2 2 1 Ferric uptake regulator family PadR PF03551.14 BAD85275.1 - 0.01 15.8 0.0 0.031 14.2 0.0 1.8 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family IF2_N PF04760.15 BAD85275.1 - 0.012 15.4 0.3 0.25 11.2 0.1 2.4 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region Takusan PF04822.13 BAD85275.1 - 0.029 14.3 2.9 0.059 13.2 0.6 2.3 2 0 0 2 2 2 0 Takusan FeoC PF09012.10 BAD85275.1 - 0.16 12.1 0.6 15 5.7 0.0 2.9 3 0 0 3 3 3 0 FeoC like transcriptional regulator zf-C4H2 PF10146.9 BAD85275.1 - 1.6 9.0 3.8 2.3 8.4 3.8 1.2 1 0 0 1 1 1 0 Zinc finger-containing protein Fer4 PF00037.27 BAD85276.1 - 6.9e-16 57.3 12.1 2.1e-08 33.6 1.1 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 BAD85276.1 - 1.4e-11 43.9 11.9 1.5e-06 28.0 2.3 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 BAD85276.1 - 9.8e-11 42.1 6.5 1.6e-05 25.4 0.3 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 BAD85276.1 - 3.3e-10 39.4 11.3 1.6e-05 24.7 1.4 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 BAD85276.1 - 1.5e-09 37.9 30.2 1.1e-05 25.5 11.1 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_16 PF13484.6 BAD85276.1 - 4.9e-09 37.0 7.9 0.00019 22.3 2.2 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 BAD85276.1 - 1.7e-08 34.4 9.8 3.8e-08 33.3 9.8 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 BAD85276.1 - 1.8e-08 34.3 11.1 0.00022 21.3 1.1 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 BAD85276.1 - 5.1e-06 26.8 7.5 0.0038 17.7 0.8 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 BAD85276.1 - 2.1e-05 24.6 12.1 0.0016 18.8 3.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 BAD85276.1 - 2.5e-05 24.5 6.1 2.9e-05 24.2 6.1 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 BAD85276.1 - 5.5e-05 23.6 7.4 0.049 14.2 1.2 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 BAD85276.1 - 0.00085 19.8 12.6 0.088 13.4 4.3 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 BAD85276.1 - 0.025 15.5 17.5 0.054 14.4 4.3 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.6 BAD85276.1 - 0.085 13.6 14.1 0.33 11.7 2.9 2.7 2 2 0 2 2 2 0 4Fe-4S single cluster domain Fer4_22 PF17179.4 BAD85276.1 - 1.3 9.9 14.4 2.8 8.8 3.4 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_19 PF06902.11 BAD85276.1 - 7.9 6.6 9.6 49 4.1 9.6 2.2 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster FAD_binding_3 PF01494.19 BAD85277.1 - 1.3e-16 60.8 1.2 1.5e-14 54.1 1.2 2.8 1 1 0 1 1 1 1 FAD binding domain Lycopene_cycl PF05834.12 BAD85277.1 - 3.4e-13 49.4 0.0 5.3e-13 48.8 0.0 1.3 1 0 0 1 1 1 1 Lycopene cyclase protein DAO PF01266.24 BAD85277.1 - 6.1e-10 39.2 1.6 0.00055 19.6 0.5 2.4 1 1 1 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 BAD85277.1 - 3.9e-09 36.1 1.3 0.00035 19.8 0.5 2.4 3 0 0 3 3 3 2 FAD binding domain FAD_oxidored PF12831.7 BAD85277.1 - 1.6e-08 34.4 2.7 2.9e-08 33.5 1.1 2.3 3 1 0 3 3 3 1 FAD dependent oxidoreductase Trp_halogenase PF04820.14 BAD85277.1 - 1.3e-06 27.5 0.5 0.002 17.0 0.0 2.2 2 0 0 2 2 2 2 Tryptophan halogenase NAD_binding_8 PF13450.6 BAD85277.1 - 1.6e-05 25.0 0.2 5.7e-05 23.3 0.0 2.1 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 BAD85277.1 - 5.2e-05 22.6 7.1 0.00052 19.3 0.3 2.7 2 2 2 4 4 4 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 BAD85277.1 - 0.00029 19.7 0.4 0.0023 16.7 0.1 2.0 2 0 0 2 2 2 1 HI0933-like protein Thi4 PF01946.17 BAD85277.1 - 0.0012 18.1 0.7 0.0071 15.6 0.1 2.3 2 0 0 2 2 2 1 Thi4 family GIDA PF01134.22 BAD85277.1 - 0.0028 16.8 0.6 0.0074 15.4 0.2 1.9 2 0 0 2 2 2 1 Glucose inhibited division protein A 3HCDH_N PF02737.18 BAD85277.1 - 0.02 14.8 0.4 0.04 13.8 0.1 1.7 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GDI PF00996.18 BAD85277.1 - 0.025 13.1 0.1 0.21 10.1 0.0 2.0 2 0 0 2 2 2 0 GDP dissociation inhibitor SE PF08491.10 BAD85277.1 - 0.06 12.4 0.0 0.13 11.3 0.0 1.5 2 0 0 2 2 2 0 Squalene epoxidase Pyr_redox PF00070.27 BAD85277.1 - 0.091 13.3 2.5 18 5.9 0.1 3.4 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase BCAS2 PF05700.11 BAD85277.1 - 0.11 12.1 0.3 0.18 11.5 0.3 1.2 1 0 0 1 1 1 0 Breast carcinoma amplified sequence 2 (BCAS2) TctB PF07331.11 BAD85279.1 - 0.035 14.4 24.4 0.051 13.9 24.4 1.2 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family Yip1 PF04893.17 BAD85279.1 - 0.056 13.2 28.9 0.09 12.5 28.3 1.7 1 1 0 1 1 1 0 Yip1 domain DUF456 PF04306.13 BAD85279.1 - 0.45 10.8 27.4 0.56 10.5 27.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF456) ThrE PF06738.12 BAD85279.1 - 6.2 6.1 15.7 5.5 6.3 1.3 2.1 1 1 1 2 2 2 0 Putative threonine/serine exporter Topoisom_bac PF01131.20 BAD85280.1 - 5.4e-128 427.5 0.1 6.4e-75 252.7 0.1 2.2 2 0 0 2 2 2 2 DNA topoisomerase Intein_splicing PF14890.6 BAD85280.1 - 3e-20 72.6 0.0 3e-20 72.6 0.0 2.6 3 0 0 3 3 3 1 Intein splicing domain Toprim PF01751.22 BAD85280.1 - 2e-18 66.5 0.4 1.1e-17 64.1 0.0 2.5 2 0 0 2 2 2 1 Toprim domain LAGLIDADG_3 PF14528.6 BAD85280.1 - 4e-18 65.5 0.0 8.5e-16 58.0 0.0 2.9 2 0 0 2 2 2 1 LAGLIDADG-like domain zf-C4_Topoisom PF01396.19 BAD85280.1 - 4.9e-14 51.8 2.7 8.1e-14 51.1 2.0 1.8 2 0 0 2 2 2 1 Topoisomerase DNA binding C4 zinc finger Hom_end PF05204.14 BAD85280.1 - 0.051 13.7 0.0 1.2 9.4 0.0 2.4 2 0 0 2 2 2 0 Homing endonuclease DUF4364 PF14277.6 BAD85280.1 - 0.061 13.1 0.7 0.21 11.3 0.5 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4364) ADK_lid PF05191.14 BAD85280.1 - 0.087 12.8 0.2 0.25 11.4 0.2 1.8 1 0 0 1 1 1 0 Adenylate kinase, active site lid TIP49 PF06068.13 BAD85281.1 - 0.086 12.0 0.1 0.11 11.7 0.1 1.2 1 0 0 1 1 1 0 TIP49 P-loop domain AAA_33 PF13671.6 BAD85281.1 - 0.17 12.1 0.0 0.53 10.5 0.0 1.8 2 0 0 2 2 2 0 AAA domain ThiS PF02597.20 BAD85282.1 - 4.1e-10 40.2 0.9 4.7e-10 40.0 0.9 1.0 1 0 0 1 1 1 1 ThiS family Ub-Mut7C PF14451.6 BAD85282.1 - 0.00062 19.6 0.6 0.00066 19.5 0.6 1.1 1 0 0 1 1 1 1 Mut7-C ubiquitin TGS PF02824.21 BAD85282.1 - 0.0028 17.7 0.1 0.0033 17.5 0.1 1.2 1 0 0 1 1 1 1 TGS domain eRF1_1 PF03463.15 BAD85282.1 - 0.11 12.6 0.0 0.16 12.0 0.0 1.2 1 1 0 1 1 1 0 eRF1 domain 1 Oxidored_molyb PF00174.19 BAD85282.1 - 0.14 11.8 0.0 0.15 11.7 0.0 1.0 1 0 0 1 1 1 0 Oxidoreductase molybdopterin binding domain Aminotran_1_2 PF00155.21 BAD85283.1 - 1.5e-60 205.3 0.0 1.7e-60 205.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 BAD85283.1 - 2e-06 27.4 0.0 6.6e-06 25.7 0.0 1.7 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 BAD85283.1 - 1.1e-05 24.9 0.0 1.9e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 BAD85283.1 - 0.00039 19.5 0.0 0.016 14.2 0.0 2.8 2 1 1 3 3 3 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 BAD85283.1 - 0.057 11.9 0.0 0.091 11.3 0.0 1.2 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Lys_export PF03956.13 BAD85284.1 - 0.00028 20.5 6.9 0.00034 20.2 6.9 1.0 1 0 0 1 1 1 1 Lysine exporter LysO CstA PF02554.14 BAD85284.1 - 0.016 14.1 2.8 0.016 14.1 2.8 1.0 1 0 0 1 1 1 0 Carbon starvation protein CstA DUF5518 PF17647.1 BAD85284.1 - 0.045 13.9 11.3 0.059 13.5 11.3 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5518) LptF_LptG PF03739.14 BAD85284.1 - 0.93 8.3 10.3 1 8.2 10.3 1.0 1 0 0 1 1 1 0 Lipopolysaccharide export system permease LptF/LptG CoA_binding_3 PF13727.6 BAD85284.1 - 3.7 7.5 7.9 3.5 7.6 7.4 1.3 1 1 0 1 1 1 0 CoA-binding domain Lys_export PF03956.13 BAD85285.1 - 2.6e-57 193.4 11.9 3.1e-57 193.2 11.9 1.0 1 0 0 1 1 1 1 Lysine exporter LysO DUF5453 PF17534.2 BAD85285.1 - 0.0069 16.4 0.3 0.035 14.1 0.1 2.1 1 1 1 2 2 2 1 Family of unknown function (DUF5453) Colicin_V PF02674.16 BAD85285.1 - 0.016 15.2 1.9 0.016 15.2 1.9 3.0 1 1 1 2 2 2 0 Colicin V production protein CHAD PF05235.14 BAD85286.1 - 0.0021 18.1 0.0 0.0046 17.0 0.0 1.4 1 1 0 1 1 1 1 CHAD domain PriA_3primeBD PF17764.1 BAD85286.1 - 0.047 13.6 0.4 0.3 11.0 0.0 2.1 2 0 0 2 2 2 0 3′ DNA-binding domain (3′BD) WHIM1 PF15612.6 BAD85286.1 - 0.081 12.5 0.1 0.23 11.1 0.1 1.8 1 0 0 1 1 1 0 WSTF, HB1, Itc1p, MBD9 motif 1 EVC2_like PF12297.8 BAD85286.1 - 0.11 11.1 4.2 0.72 8.5 1.5 2.1 2 0 0 2 2 2 0 Ellis van Creveld protein 2 like protein COQ7 PF03232.13 BAD85286.1 - 0.26 11.1 3.5 0.89 9.3 0.4 2.3 2 1 1 3 3 3 0 Ubiquinone biosynthesis protein COQ7 AAA_18 PF13238.6 BAD85286.1 - 0.31 11.6 1.5 0.57 10.7 0.1 2.0 2 0 0 2 2 2 0 AAA domain Ribosomal_L44 PF00935.19 BAD85287.1 - 1.7e-26 92.5 5.7 2.2e-26 92.1 5.7 1.1 1 0 0 1 1 1 1 Ribosomal protein L44 Ribosomal_L33 PF00471.20 BAD85287.1 - 0.00071 20.0 4.3 0.0029 18.0 2.0 2.4 2 0 0 2 2 2 1 Ribosomal protein L33 NOB1_Zn_bind PF08772.11 BAD85287.1 - 0.024 14.8 2.6 0.051 13.8 0.4 2.0 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like Nudix_N_2 PF14803.6 BAD85287.1 - 0.027 14.4 2.1 4.4 7.3 0.1 2.3 2 0 0 2 2 2 0 Nudix N-terminal Elf1 PF05129.13 BAD85287.1 - 0.07 13.2 4.2 0.44 10.6 0.3 2.2 1 1 0 2 2 2 0 Transcription elongation factor Elf1 like HypA PF01155.19 BAD85287.1 - 0.11 12.5 0.4 0.39 10.7 0.4 1.8 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Ribosomal_S27e PF01667.17 BAD85288.1 - 1.7e-26 91.7 0.7 1.9e-26 91.5 0.7 1.0 1 0 0 1 1 1 1 Ribosomal protein S27 TF_Zn_Ribbon PF08271.12 BAD85288.1 - 0.012 15.1 0.3 0.014 14.9 0.3 1.2 1 0 0 1 1 1 0 TFIIB zinc-binding zinc_ribbon_6 PF14599.6 BAD85288.1 - 0.016 15.2 0.1 0.021 14.8 0.1 1.1 1 0 0 1 1 1 0 Zinc-ribbon HypA PF01155.19 BAD85288.1 - 0.022 14.8 0.1 0.025 14.6 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-RanBP PF00641.18 BAD85288.1 - 0.075 12.4 1.0 4.8 6.6 0.1 2.1 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others Zn-ribbon_8 PF09723.10 BAD85288.1 - 0.088 12.9 0.3 0.14 12.3 0.3 1.3 1 0 0 1 1 1 0 Zinc ribbon domain ADD_DNMT3 PF17980.1 BAD85288.1 - 0.11 12.5 1.9 0.96 9.5 1.9 2.0 1 1 0 1 1 1 0 Cysteine rich ADD domain in DNMT3 DNA_RNApol_7kD PF03604.13 BAD85288.1 - 0.27 10.9 2.8 0.84 9.4 2.8 1.8 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-trcl PF13451.6 BAD85288.1 - 0.95 9.4 3.0 21 5.1 3.0 2.1 1 1 0 1 1 1 0 Probable zinc-ribbon domain zf-CCHC_6 PF15288.6 BAD85288.1 - 2.6 8.0 5.6 3.9 7.4 2.5 2.2 1 1 1 2 2 2 0 Zinc knuckle EIF_2_alpha PF07541.12 BAD85289.1 - 3e-24 85.3 0.7 1.6e-23 83.0 0.1 2.2 2 0 0 2 2 2 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.23 BAD85289.1 - 2.3e-13 50.3 0.0 4.8e-13 49.3 0.0 1.6 1 0 0 1 1 1 1 S1 RNA binding domain DUF5105 PF17118.5 BAD85289.1 - 0.0067 16.2 0.3 0.035 13.9 0.2 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF5105) Nop10p PF04135.12 BAD85290.1 - 1.9e-28 98.3 2.0 2e-28 98.2 2.0 1.0 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family RecR PF02132.15 BAD85290.1 - 2.7e-05 23.6 0.9 3.6e-05 23.2 0.9 1.2 1 0 0 1 1 1 1 RecR protein DUF35_N PF12172.8 BAD85290.1 - 0.00035 20.4 2.3 0.00035 20.4 2.3 2.0 1 1 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) PolC_DP2 PF03833.13 BAD85290.1 - 0.00041 18.4 0.1 0.00041 18.4 0.1 1.0 1 0 0 1 1 1 1 DNA polymerase II large subunit DP2 zf-NADH-PPase PF09297.11 BAD85290.1 - 0.00058 19.5 3.5 0.13 12.0 0.2 2.3 2 0 0 2 2 2 2 NADH pyrophosphatase zinc ribbon domain Prim_Zn_Ribbon PF08273.12 BAD85290.1 - 0.00078 19.7 1.3 0.32 11.3 0.1 2.3 2 0 0 2 2 2 2 Zinc-binding domain of primase-helicase NRDD PF13597.6 BAD85290.1 - 0.0037 16.1 0.9 0.004 16.0 0.9 1.0 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase TF_Zn_Ribbon PF08271.12 BAD85290.1 - 0.0056 16.2 6.5 0.43 10.1 0.8 2.2 1 1 1 2 2 2 2 TFIIB zinc-binding DNA_ligase_ZBD PF03119.16 BAD85290.1 - 0.0074 16.3 3.9 0.16 12.0 0.9 2.2 2 0 0 2 2 2 1 NAD-dependent DNA ligase C4 zinc finger domain DUF1272 PF06906.11 BAD85290.1 - 0.014 15.5 1.3 0.02 15.0 1.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) zf-ISL3 PF14690.6 BAD85290.1 - 0.014 16.0 6.1 0.68 10.6 0.5 2.3 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-nanos PF05741.13 BAD85290.1 - 0.017 15.3 1.2 0.11 12.8 1.2 2.0 1 1 0 1 1 1 0 Nanos RNA binding domain zf-FPG_IleRS PF06827.14 BAD85290.1 - 0.019 14.8 6.4 0.12 12.3 0.7 2.3 1 1 1 2 2 2 0 Zinc finger found in FPG and IleRS zf-tcix PF14952.6 BAD85290.1 - 0.034 13.8 2.0 0.034 13.8 2.0 2.3 1 1 1 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding TackOD1 PF18551.1 BAD85290.1 - 0.035 13.8 0.9 0.038 13.6 0.9 1.1 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 Zn-ribbon_8 PF09723.10 BAD85290.1 - 0.048 13.8 5.2 2.9 8.1 5.2 2.2 1 1 0 1 1 1 0 Zinc ribbon domain DZR PF12773.7 BAD85290.1 - 0.054 13.5 2.6 0.09 12.8 2.6 1.4 1 1 0 1 1 1 0 Double zinc ribbon zf-IS66 PF13005.7 BAD85290.1 - 0.073 13.5 3.6 3.6 8.1 0.3 2.4 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 zinc_ribbon_2 PF13240.6 BAD85290.1 - 0.078 12.7 6.6 1.5 8.7 1.9 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-TFIIB PF13453.6 BAD85290.1 - 0.083 12.2 2.5 2.8 7.3 0.2 2.3 1 1 1 2 2 2 0 Transcription factor zinc-finger zf-RRN7 PF11781.8 BAD85290.1 - 0.12 12.1 0.5 0.12 12.1 0.5 2.2 1 1 1 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Rubredoxin_2 PF18073.1 BAD85290.1 - 0.19 11.5 2.4 4.4 7.1 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain Zn_Tnp_IS1595 PF12760.7 BAD85290.1 - 0.2 11.6 6.6 0.71 9.9 0.4 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Cys_rich_CPCC PF14206.6 BAD85290.1 - 0.21 11.5 2.6 0.36 10.7 2.6 1.4 1 1 0 1 1 1 0 Cysteine-rich CPCC HypA PF01155.19 BAD85290.1 - 0.26 11.3 1.0 0.35 10.9 1.0 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ribbon_3 PF13248.6 BAD85290.1 - 0.3 10.6 8.9 10 5.7 8.9 2.1 1 1 0 1 1 1 0 zinc-ribbon domain CpXC PF14353.6 BAD85290.1 - 0.38 10.8 2.4 3.9 7.5 0.1 2.1 1 1 1 2 2 2 0 CpXC protein PhnA_Zn_Ribbon PF08274.12 BAD85290.1 - 0.46 10.5 3.9 5 7.2 0.1 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon Zn_ribbon_SprT PF17283.2 BAD85290.1 - 0.66 9.9 5.6 12 5.9 0.4 2.9 3 0 0 3 3 3 0 SprT-like zinc ribbon domain Lar_restr_allev PF14354.6 BAD85290.1 - 0.96 9.9 5.4 1.1 9.7 0.3 2.1 1 1 1 2 2 2 0 Restriction alleviation protein Lar Ribosomal_L32p PF01783.23 BAD85290.1 - 1 9.7 7.4 14 6.0 0.2 2.2 2 1 0 2 2 1 0 Ribosomal L32p protein family Rad50_zn_hook PF04423.14 BAD85290.1 - 2.4 8.1 8.0 1 9.2 0.4 2.5 3 0 0 3 3 3 0 Rad50 zinc hook motif Zn-C2H2_12 PF18112.1 BAD85290.1 - 2.8 8.5 5.6 11 6.6 0.6 2.5 2 0 0 2 2 2 0 Autophagy receptor zinc finger-C2H2 domain PAC2 PF09754.9 BAD85291.1 - 2.1e-51 174.9 0.1 2.5e-51 174.7 0.1 1.0 1 0 0 1 1 1 1 PAC2 family IU_nuc_hydro PF01156.19 BAD85291.1 - 0.085 12.4 0.2 0.16 11.5 0.0 1.5 2 0 0 2 2 2 0 Inosine-uridine preferring nucleoside hydrolase CbiM PF01891.16 BAD85292.1 - 3.5e-61 206.6 22.0 3.9e-61 206.5 22.0 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region PDGLE PF13190.6 BAD85293.1 - 3.8e-07 29.9 2.4 6e-06 26.1 0.1 2.1 1 1 1 2 2 2 2 PDGLE domain FeoB_C PF07664.12 BAD85293.1 - 0.08 12.6 1.3 0.08 12.6 1.3 2.0 2 0 0 2 2 2 0 Ferrous iron transport protein B C terminus CbiQ PF02361.16 BAD85294.1 - 8.3e-28 97.5 10.5 9.9e-28 97.3 10.5 1.1 1 0 0 1 1 1 1 Cobalt transport protein ABC_tran PF00005.27 BAD85295.1 - 2.1e-28 99.6 0.0 3.7e-28 98.7 0.0 1.4 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 BAD85295.1 - 3.3e-09 37.0 0.1 3.9e-05 23.6 0.1 2.1 1 1 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 BAD85295.1 - 4.1e-05 23.1 0.2 0.00046 19.7 0.2 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 BAD85295.1 - 0.00022 20.9 0.1 0.00064 19.4 0.1 1.7 2 0 0 2 2 2 1 P-loop containing region of AAA domain NTPase_1 PF03266.15 BAD85295.1 - 0.0043 17.0 0.7 1.6 8.7 0.1 2.1 2 0 0 2 2 2 2 NTPase AAA_23 PF13476.6 BAD85295.1 - 0.036 14.6 0.4 0.073 13.6 0.3 1.4 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 BAD85295.1 - 0.048 13.6 0.1 0.072 13.0 0.1 1.2 1 0 0 1 1 1 0 RsgA GTPase Arf PF00025.21 BAD85295.1 - 0.049 13.1 0.1 1 8.8 0.0 2.1 2 0 0 2 2 2 0 ADP-ribosylation factor family AAA_14 PF13173.6 BAD85295.1 - 0.073 13.1 0.3 18 5.4 0.0 2.5 3 0 0 3 3 3 0 AAA domain cobW PF02492.19 BAD85295.1 - 0.074 12.6 0.1 0.11 12.0 0.1 1.2 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_25 PF13481.6 BAD85295.1 - 0.14 11.7 0.0 1.2 8.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain DLIC PF05783.11 BAD85295.1 - 0.26 10.1 0.1 0.36 9.6 0.1 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) PGM_PMM_I PF02878.16 BAD85297.1 - 4.4e-48 162.5 0.0 1.1e-47 161.2 0.0 1.8 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 BAD85297.1 - 1.2e-30 106.1 0.0 3.2e-30 104.8 0.0 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 BAD85297.1 - 1.4e-27 96.1 0.0 2.7e-27 95.2 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 BAD85297.1 - 3.1e-13 49.7 0.9 1.1e-12 47.9 0.1 2.2 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain AP_endonuc_2 PF01261.24 BAD85297.1 - 0.023 14.1 0.0 0.42 10.0 0.0 2.2 2 0 0 2 2 2 0 Xylose isomerase-like TIM barrel MannoseP_isomer PF01050.18 BAD85298.1 - 1.1e-65 220.1 0.4 1.9e-65 219.4 0.4 1.3 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase NTP_transferase PF00483.23 BAD85298.1 - 1.8e-58 198.1 0.0 2.5e-58 197.6 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase Cupin_2 PF07883.11 BAD85298.1 - 1.3e-12 47.2 0.1 4.2e-12 45.6 0.1 1.9 1 0 0 1 1 1 1 Cupin domain NTP_transf_3 PF12804.7 BAD85298.1 - 2e-07 31.5 0.0 3.9e-07 30.5 0.0 1.5 1 0 0 1 1 1 1 MobA-like NTP transferase domain Cupin_6 PF12852.7 BAD85298.1 - 0.00016 21.5 0.1 0.0034 17.1 0.0 2.2 1 1 1 2 2 2 1 Cupin AraC_binding PF02311.19 BAD85298.1 - 0.0047 16.8 0.0 0.0095 15.8 0.0 1.4 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.12 BAD85298.1 - 0.0074 16.0 0.0 0.018 14.7 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF861) ADP_PFK_GK PF04587.15 BAD85299.1 - 2.5e-93 313.0 0.0 2.8e-93 312.8 0.0 1.0 1 0 0 1 1 1 1 ADP-specific Phosphofructokinase/Glucokinase conserved region GPI PF06560.11 BAD85300.1 - 4.5e-41 140.1 0.1 5.2e-41 139.9 0.1 1.0 1 0 0 1 1 1 1 Glucose-6-phosphate isomerase (GPI) Cupin_2 PF07883.11 BAD85300.1 - 1.2e-08 34.6 0.0 2.6e-08 33.4 0.0 1.6 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.22 BAD85300.1 - 3.1e-05 23.6 0.0 4.6e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 Cupin DUF3368 PF11848.8 BAD85300.1 - 0.0047 16.7 0.0 0.0076 16.0 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF3368) DMSP_lyase PF16867.5 BAD85300.1 - 0.012 15.3 0.0 0.018 14.7 0.0 1.2 1 0 0 1 1 1 0 Dimethlysulfonioproprionate lyase Cupin_3 PF05899.12 BAD85300.1 - 0.012 15.2 0.5 0.025 14.3 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF861) KH_2 PF07650.17 BAD85301.1 - 1.9e-05 24.4 1.8 2.1e-05 24.2 1.8 1.1 1 0 0 1 1 1 1 KH domain SIS_2 PF13580.6 BAD85301.1 - 0.066 13.2 0.0 0.07 13.2 0.0 1.0 1 0 0 1 1 1 0 SIS domain TraB PF01963.17 BAD85302.1 - 6e-15 55.9 0.0 2.1e-12 47.5 0.0 2.1 1 1 0 1 1 1 1 TraB family Lactamase_B_2 PF12706.7 BAD85303.1 - 1.5e-20 73.6 0.0 2e-10 40.5 0.0 2.3 2 0 0 2 2 2 2 Beta-lactamase superfamily domain Lactamase_B PF00753.27 BAD85303.1 - 3.6e-11 43.4 0.0 8.2e-10 39.0 0.0 2.2 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.6 BAD85303.1 - 1e-06 28.3 0.0 2.1e-06 27.3 0.0 1.5 1 0 0 1 1 1 1 tRNase Z endonuclease LEM PF03020.15 BAD85303.1 - 0.085 12.4 0.1 0.16 11.5 0.1 1.5 1 0 0 1 1 1 0 LEM domain RPN7 PF10602.9 BAD85304.1 - 1.8e-07 31.1 2.6 5.7e-07 29.4 0.5 2.3 1 1 1 2 2 2 1 26S proteasome subunit RPN7 TPR_12 PF13424.6 BAD85304.1 - 1.1e-06 28.8 4.4 1.1e-06 28.8 4.4 2.6 3 0 0 3 3 2 1 Tetratricopeptide repeat SNAP PF14938.6 BAD85304.1 - 0.00024 20.6 0.3 0.00024 20.6 0.3 1.7 2 0 0 2 2 2 1 Soluble NSF attachment protein, SNAP TPR_2 PF07719.17 BAD85304.1 - 0.00024 20.9 15.4 0.0021 18.0 1.6 4.3 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_1 PF00515.28 BAD85304.1 - 0.00054 19.7 1.0 0.00054 19.7 1.0 4.3 5 0 0 5 5 5 1 Tetratricopeptide repeat TPR_7 PF13176.6 BAD85304.1 - 0.00088 19.1 6.7 0.051 13.6 0.4 4.0 3 1 0 3 3 2 2 Tetratricopeptide repeat TPR_8 PF13181.6 BAD85304.1 - 0.0049 17.0 2.6 0.0049 17.0 2.6 4.4 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_20 PF14561.6 BAD85304.1 - 0.023 15.0 3.1 0.06 13.7 0.1 3.1 3 2 1 4 4 4 0 Tetratricopeptide repeat TPR_6 PF13174.6 BAD85304.1 - 0.042 14.5 7.4 3.2 8.6 0.2 3.9 4 1 1 5 5 2 0 Tetratricopeptide repeat EDR1 PF14381.6 BAD85304.1 - 0.084 12.6 0.0 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 Ethylene-responsive protein kinase Le-CTR1 TPR_16 PF13432.6 BAD85304.1 - 0.094 13.4 3.2 5.6 7.7 0.1 3.3 3 1 1 4 4 3 0 Tetratricopeptide repeat TPR_11 PF13414.6 BAD85304.1 - 0.1 12.3 4.7 0.8 9.4 0.1 3.7 3 1 0 3 3 3 0 TPR repeat PmbA_TldD PF01523.16 BAD85304.1 - 0.15 11.9 0.1 0.33 10.8 0.1 1.5 1 1 0 1 1 1 0 Putative modulator of DNA gyrase DeoC PF01791.9 BAD85304.1 - 0.16 11.5 0.2 0.38 10.3 0.2 1.6 1 0 0 1 1 1 0 DeoC/LacD family aldolase TPR_19 PF14559.6 BAD85304.1 - 0.28 11.7 6.1 2.9 8.5 0.1 3.5 2 1 1 3 3 3 0 Tetratricopeptide repeat Nmad4 PF18756.1 BAD85304.1 - 0.4 11.1 4.9 0.24 11.8 0.6 2.5 2 0 0 2 2 2 0 Nucleotide modification associated domain 4 TPR_14 PF13428.6 BAD85304.1 - 0.63 11.0 6.6 6.9 7.8 0.1 4.1 3 1 1 4 4 4 0 Tetratricopeptide repeat tRNA_U5-meth_tr PF05958.11 BAD85305.1 - 7.6e-21 74.5 0.2 1.8e-13 50.2 0.0 2.1 1 1 1 2 2 2 2 tRNA (Uracil-5-)-methyltransferase MTS PF05175.14 BAD85305.1 - 3.8e-10 39.6 0.0 6.7e-10 38.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Met_10 PF02475.16 BAD85305.1 - 6.4e-09 35.9 0.2 1.6e-08 34.5 0.1 1.7 1 1 1 2 2 2 1 Met-10+ like-protein Methyltransf_25 PF13649.6 BAD85305.1 - 2.3e-07 31.4 0.0 6.1e-06 26.9 0.0 2.4 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 BAD85305.1 - 1.9e-05 24.5 0.0 4.1e-05 23.4 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain PrmA PF06325.13 BAD85305.1 - 6.6e-05 22.4 0.0 9e-05 22.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_11 PF08241.12 BAD85305.1 - 0.0069 17.0 0.0 0.02 15.5 0.0 1.9 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 BAD85305.1 - 0.0074 15.9 0.0 0.012 15.2 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_23 PF13489.6 BAD85305.1 - 0.0076 16.1 0.0 0.013 15.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 BAD85305.1 - 0.011 15.4 0.0 0.025 14.2 0.0 1.7 1 1 0 1 1 1 0 RNA cap guanine-N2 methyltransferase UPF0020 PF01170.18 BAD85305.1 - 0.23 11.1 0.0 0.4 10.3 0.0 1.4 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 PIN PF01850.21 BAD85307.1 - 1.5e-19 70.7 0.2 2e-19 70.3 0.2 1.2 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.6 BAD85307.1 - 0.0065 17.2 0.0 0.0097 16.7 0.0 1.3 1 0 0 1 1 1 1 PIN domain PIN_12 PF16289.5 BAD85307.1 - 0.052 14.0 0.0 0.077 13.5 0.0 1.3 1 0 0 1 1 1 0 PIN domain MAD PF05557.13 BAD85307.1 - 0.14 10.5 0.0 0.18 10.1 0.0 1.1 1 0 0 1 1 1 0 Mitotic checkpoint protein PTPS PF01242.19 BAD85308.1 - 4e-30 104.3 0.0 4.9e-30 104.0 0.0 1.0 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase DUF192 PF02643.15 BAD85309.1 - 1.8e-18 66.4 0.0 2.4e-18 66.1 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 Prefoldin PF02996.17 BAD85310.1 - 2.3e-22 79.1 1.7 2.8e-22 78.9 0.3 1.7 1 1 1 2 2 2 1 Prefoldin subunit Prefoldin_2 PF01920.20 BAD85310.1 - 0.0025 17.7 4.6 0.043 13.8 0.6 2.2 2 0 0 2 2 2 2 Prefoldin subunit DUF948 PF06103.11 BAD85310.1 - 0.045 14.0 0.8 7 7.0 0.2 2.2 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) BLOC1_2 PF10046.9 BAD85310.1 - 0.068 13.5 3.4 0.26 11.6 0.2 2.2 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Poly_export PF02563.16 BAD85310.1 - 0.07 13.4 0.1 6 7.2 0.0 2.4 2 0 0 2 2 2 0 Polysaccharide biosynthesis/export protein YebO PF13974.6 BAD85310.1 - 0.11 12.6 2.4 0.21 11.7 2.4 1.5 1 0 0 1 1 1 0 YebO-like protein DUF1664 PF07889.12 BAD85310.1 - 0.17 11.9 2.3 8.9 6.4 0.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) COG2 PF06148.11 BAD85310.1 - 0.22 11.6 1.9 6.4 6.9 0.5 2.3 2 0 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 APG6_N PF17675.1 BAD85310.1 - 0.55 10.8 6.6 6.3 7.3 6.6 2.0 1 1 0 1 1 1 0 Apg6 coiled-coil region SlyX PF04102.12 BAD85310.1 - 3.2 8.5 6.5 33 5.2 2.4 2.3 2 0 0 2 2 2 0 SlyX DUF4349 PF14257.6 BAD85310.1 - 4.7 6.6 7.3 0.43 10.0 0.3 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4349) Prefoldin_2 PF01920.20 BAD85311.1 - 2.2e-11 43.6 8.1 2.5e-11 43.5 8.1 1.0 1 0 0 1 1 1 1 Prefoldin subunit FapA PF03961.13 BAD85311.1 - 1.5 7.3 6.1 1.9 7.0 6.1 1.1 1 0 0 1 1 1 0 Flagellar Assembly Protein A APG6_N PF17675.1 BAD85311.1 - 1.6 9.3 13.5 0.48 11.0 5.7 2.0 1 1 1 2 2 2 0 Apg6 coiled-coil region POR PF01558.18 BAD85312.1 - 2.8e-33 115.5 0.1 3.3e-33 115.2 0.1 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.21 BAD85313.1 - 8.2e-36 123.1 0.2 1.2e-35 122.6 0.2 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain XFP_N PF09364.10 BAD85313.1 - 0.081 11.7 0.1 0.13 11.1 0.1 1.2 1 0 0 1 1 1 0 XFP N-terminal domain POR_N PF01855.19 BAD85314.1 - 2.6e-80 269.5 0.1 3.3e-80 269.2 0.1 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 BAD85314.1 - 2.7e-21 75.8 0.1 5.2e-21 74.9 0.1 1.5 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 BAD85314.1 - 4.5e-11 42.7 0.0 9.4e-11 41.7 0.0 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.18 BAD85314.1 - 1.8e-05 24.4 0.6 2.6e-05 23.9 0.6 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain POR PF01558.18 BAD85315.1 - 2.7e-38 131.8 0.5 4.6e-38 131.0 0.5 1.3 1 1 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase DUF348 PF03990.14 BAD85315.1 - 0.066 13.0 0.7 0.18 11.5 0.7 1.8 1 0 0 1 1 1 0 G5-linked-Ubiquitin-like domain HEPN PF05168.14 BAD85316.1 - 1.9e-28 98.9 2.1 2.3e-28 98.7 2.1 1.0 1 0 0 1 1 1 1 HEPN domain NTP_transf_2 PF01909.23 BAD85317.1 - 2.1e-11 43.9 0.2 2.4e-11 43.8 0.2 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 BAD85317.1 - 8.4e-10 38.6 0.0 8.9e-10 38.5 0.0 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DUF294 PF03445.13 BAD85317.1 - 0.0064 16.3 0.0 0.0078 16.0 0.0 1.1 1 0 0 1 1 1 1 Putative nucleotidyltransferase DUF294 TPP_enzyme_C PF02775.21 BAD85318.1 - 1.8e-40 138.3 0.4 2.7e-40 137.7 0.4 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Cas_DxTHG PF09455.10 BAD85318.1 - 0.033 13.8 0.0 0.045 13.3 0.0 1.1 1 0 0 1 1 1 0 CRISPR-associated (Cas) DxTHG family POR_N PF01855.19 BAD85319.1 - 6.7e-76 255.1 0.0 8.4e-76 254.7 0.0 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 BAD85319.1 - 1.2e-18 67.3 0.2 1.9e-18 66.7 0.2 1.3 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 BAD85319.1 - 4.2e-06 26.6 0.0 9.6e-06 25.5 0.0 1.6 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.18 BAD85319.1 - 0.0066 16.1 0.1 0.013 15.1 0.1 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4 PF00037.27 BAD85320.1 - 3.8e-12 45.5 13.4 2e-06 27.4 2.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 BAD85320.1 - 4.2e-11 43.2 7.5 6e-11 42.8 7.5 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 BAD85320.1 - 4.8e-09 36.2 17.7 3.9e-06 26.9 9.7 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 BAD85320.1 - 1.4e-06 29.1 5.9 0.0016 19.3 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_13 PF13370.6 BAD85320.1 - 1.6e-06 28.6 5.7 0.01 16.4 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_2 PF12797.7 BAD85320.1 - 1.8e-06 27.7 11.3 0.0019 18.2 1.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain ETF_QO PF05187.13 BAD85320.1 - 3.5e-06 27.1 0.5 3.8e-06 27.0 0.5 1.2 1 0 0 1 1 1 1 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_10 PF13237.6 BAD85320.1 - 5.6e-06 26.4 10.0 2.2e-05 24.5 10.2 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 BAD85320.1 - 7.8e-06 25.9 12.9 0.00026 21.1 13.2 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 BAD85320.1 - 7e-05 23.3 11.4 0.0024 18.4 11.5 2.1 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_22 PF17179.4 BAD85320.1 - 9e-05 23.3 3.7 0.021 15.7 0.3 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 BAD85320.1 - 0.00012 22.0 15.8 0.0083 16.2 2.4 2.3 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 BAD85320.1 - 0.00078 19.8 10.8 0.051 14.1 2.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.6 BAD85320.1 - 0.0025 18.5 7.3 0.016 15.9 0.6 2.3 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_8 PF13183.6 BAD85320.1 - 0.0029 18.0 11.8 0.13 12.7 2.2 2.1 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 BAD85320.1 - 0.039 14.9 16.2 0.23 12.5 5.3 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain DUF3343 PF11823.8 BAD85320.1 - 0.041 13.3 0.2 0.077 12.5 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3343) Fer4_18 PF13746.6 BAD85320.1 - 1.4 9.2 10.4 4.3 7.6 1.4 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain zf-C2H2_11 PF16622.5 BAD85320.1 - 2.4 8.0 7.8 2.5 7.9 1.7 2.2 2 0 0 2 2 2 0 zinc-finger C2H2-type DUF2070 PF09843.9 BAD85321.1 - 1.5 7.1 5.9 2 6.6 5.9 1.5 1 1 0 1 1 1 0 Predicted membrane protein (DUF2070) DUF4231 PF14015.6 BAD85321.1 - 3 8.4 4.7 1 9.9 0.9 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF4231) LrgB PF04172.16 BAD85323.1 - 0.00033 20.2 3.0 0.00033 20.2 3.0 1.6 2 0 0 2 2 2 1 LrgB-like family Radical_SAM PF04055.21 BAD85324.1 - 1.1e-07 32.3 0.1 1.6e-07 31.8 0.1 1.2 1 0 0 1 1 1 1 Radical SAM superfamily LepA_C PF06421.12 BAD85324.1 - 0.11 12.7 0.1 0.2 11.8 0.1 1.4 1 0 0 1 1 1 0 GTP-binding protein LepA C-terminus Smr PF01713.21 BAD85325.1 - 0.12 12.7 0.2 0.93 9.9 0.0 2.3 2 0 0 2 2 2 0 Smr domain SurE PF01975.17 BAD85326.1 - 1.8e-52 178.0 0.0 2.1e-52 177.7 0.0 1.1 1 0 0 1 1 1 1 Survival protein SurE PsiE PF06146.12 BAD85327.1 - 7.3e-16 58.3 7.4 7.3e-16 58.3 7.4 1.7 2 0 0 2 2 2 1 Phosphate-starvation-inducible E DUF4381 PF14316.6 BAD85327.1 - 0.27 11.5 0.1 0.27 11.5 0.1 2.3 3 0 0 3 3 3 0 Domain of unknown function (DUF4381) DUF1230 PF06799.11 BAD85327.1 - 1.7 8.7 5.2 0.94 9.6 0.7 2.0 1 1 1 2 2 2 0 Conserved in the green lineage and diatoms 27 MatE PF01554.18 BAD85327.1 - 2.4 7.8 9.1 0.5 10.0 4.0 1.9 1 1 1 2 2 2 0 MatE AAA PF00004.29 BAD85328.1 - 8.5e-38 129.8 0.0 1.8e-37 128.7 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 BAD85328.1 - 2e-05 24.9 0.2 0.1 12.9 0.1 2.6 1 1 1 2 2 2 2 AAA domain Vps4_C PF09336.10 BAD85328.1 - 4.8e-05 23.3 0.0 0.00012 22.0 0.0 1.8 1 0 0 1 1 1 1 Vps4 C terminal oligomerisation domain RuvB_N PF05496.12 BAD85328.1 - 0.00015 21.5 0.0 0.0003 20.6 0.0 1.5 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 BAD85328.1 - 0.00023 21.6 0.1 0.022 15.2 0.1 2.4 1 1 1 2 2 2 1 AAA ATPase domain AAA_5 PF07728.14 BAD85328.1 - 0.00034 20.6 0.4 0.0031 17.5 0.4 2.2 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) DUF815 PF05673.13 BAD85328.1 - 0.00059 19.1 0.0 0.0014 17.9 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF815) AAA_33 PF13671.6 BAD85328.1 - 0.0033 17.6 0.0 0.0067 16.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_2 PF07724.14 BAD85328.1 - 0.0035 17.5 0.0 0.0055 16.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) TIP49 PF06068.13 BAD85328.1 - 0.0036 16.6 0.0 0.007 15.6 0.0 1.4 1 0 0 1 1 1 1 TIP49 P-loop domain IstB_IS21 PF01695.17 BAD85328.1 - 0.0053 16.5 0.0 0.0089 15.8 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein Mg_chelatase PF01078.21 BAD85328.1 - 0.0077 15.6 0.1 0.018 14.4 0.1 1.6 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.22 BAD85328.1 - 0.011 16.2 0.0 0.024 15.0 0.0 1.7 1 0 0 1 1 1 0 RNA helicase AAA_18 PF13238.6 BAD85328.1 - 0.013 16.0 0.0 0.027 15.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain Bac_DnaA PF00308.18 BAD85328.1 - 0.024 14.5 0.0 0.05 13.4 0.0 1.5 1 1 0 1 1 1 0 Bacterial dnaA protein AAA_25 PF13481.6 BAD85328.1 - 0.043 13.4 0.7 0.2 11.2 0.3 2.1 1 1 1 2 2 2 0 AAA domain ATPase PF06745.13 BAD85328.1 - 0.055 12.8 0.2 4.6 6.5 0.0 2.4 2 1 0 2 2 2 0 KaiC DUF2075 PF09848.9 BAD85328.1 - 0.056 12.7 0.0 0.13 11.4 0.0 1.6 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_17 PF13207.6 BAD85328.1 - 0.07 13.6 0.0 0.19 12.2 0.0 1.8 2 0 0 2 2 1 0 AAA domain AAA_14 PF13173.6 BAD85328.1 - 0.1 12.7 0.0 0.18 11.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain Cytidylate_kin PF02224.18 BAD85328.1 - 0.25 11.1 1.6 0.45 10.2 0.1 1.9 2 0 0 2 2 2 0 Cytidylate kinase tRNA-synt_2b PF00587.25 BAD85329.1 - 4.5e-38 131.0 0.0 7.2e-38 130.3 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.22 BAD85329.1 - 9.5e-28 96.6 11.8 1.7e-27 95.8 11.8 1.4 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain DUF2408 PF10303.9 BAD85329.1 - 0.007 16.9 2.8 0.013 16.0 2.8 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2408) TACC_C PF05010.14 BAD85329.1 - 0.01 15.6 3.5 0.02 14.7 3.5 1.4 1 0 0 1 1 1 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal NYD-SP28_assoc PF14775.6 BAD85329.1 - 0.051 13.7 1.2 0.051 13.7 1.2 2.3 2 0 0 2 2 2 0 Sperm tail C-terminal domain Phage_GP20 PF06810.11 BAD85329.1 - 0.065 13.0 5.6 0.12 12.2 5.6 1.3 1 0 0 1 1 1 0 Phage minor structural protein GP20 GAS PF13851.6 BAD85329.1 - 0.082 12.2 8.7 0.15 11.4 8.7 1.4 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding bZIP_1 PF00170.21 BAD85329.1 - 0.13 12.4 8.0 0.24 11.5 7.6 1.6 1 1 0 1 1 1 0 bZIP transcription factor FapA PF03961.13 BAD85329.1 - 0.13 10.8 4.2 0.19 10.3 4.2 1.1 1 0 0 1 1 1 0 Flagellar Assembly Protein A IBB PF01749.20 BAD85329.1 - 0.16 12.4 2.1 0.34 11.4 2.1 1.5 1 0 0 1 1 1 0 Importin beta binding domain Syntaxin_2 PF14523.6 BAD85329.1 - 0.18 12.2 3.6 0.36 11.2 3.6 1.4 1 0 0 1 1 1 0 Syntaxin-like protein TPR_MLP1_2 PF07926.12 BAD85329.1 - 0.18 11.8 6.3 0.33 11.0 6.3 1.3 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein BRE1 PF08647.11 BAD85329.1 - 0.31 11.2 7.3 0.67 10.1 7.3 1.5 1 1 0 1 1 1 0 BRE1 E3 ubiquitin ligase VSG_B PF13206.6 BAD85329.1 - 0.45 9.7 4.5 0.68 9.1 4.5 1.2 1 0 0 1 1 1 0 Trypanosomal VSG domain APG6_N PF17675.1 BAD85329.1 - 0.6 10.6 13.5 2 8.9 3.9 2.4 1 1 1 2 2 2 0 Apg6 coiled-coil region Tex_N PF09371.10 BAD85329.1 - 0.91 9.2 6.8 0.76 9.4 4.7 1.8 1 1 1 2 2 2 0 Tex-like protein N-terminal domain TSP_NTD PF17804.1 BAD85329.1 - 1.2 9.3 6.6 2.5 8.3 6.6 1.4 1 0 0 1 1 1 0 Tail specific protease N-terminal domain Prefoldin PF02996.17 BAD85329.1 - 2.2 8.2 8.0 0.47 10.4 2.6 2.1 1 1 1 2 2 2 0 Prefoldin subunit DUF4509 PF14970.6 BAD85329.1 - 3.2 7.6 6.8 4.2 7.3 3.0 2.5 2 1 1 3 3 3 0 Domain of unknown function (DUF4509) TMF_TATA_bd PF12325.8 BAD85329.1 - 8.5 6.6 10.3 16 5.7 10.3 1.3 1 0 0 1 1 1 0 TATA element modulatory factor 1 TATA binding HhH-GPD PF00730.25 BAD85330.1 - 1.8e-17 63.8 0.0 2.6e-17 63.2 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 BAD85330.1 - 3e-07 30.0 0.1 1.3e-06 28.0 0.0 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.9 BAD85330.1 - 0.00031 21.0 6.7 0.00031 21.0 6.7 1.8 2 0 0 2 2 2 1 Iron-sulfur binding domain of endonuclease III HHH_2 PF12826.7 BAD85330.1 - 0.018 15.1 0.0 1.8 8.7 0.0 2.4 2 0 0 2 2 2 0 Helix-hairpin-helix motif Scm3 PF10384.9 BAD85330.1 - 0.095 12.5 0.1 0.28 11.0 0.1 1.7 1 0 0 1 1 1 0 Centromere protein Scm3 DUF2400 PF09674.10 BAD85330.1 - 0.12 12.4 0.0 0.27 11.2 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2400) HHH_5 PF14520.6 BAD85330.1 - 1.2 9.8 4.1 2.1 9.0 0.0 2.9 4 0 0 4 4 4 0 Helix-hairpin-helix domain CDC48_2 PF02933.17 BAD85331.1 - 2e-07 30.7 0.6 5.8e-07 29.2 0.1 2.0 2 1 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 BCL_N PF04714.13 BAD85331.1 - 0.01 15.9 2.4 0.034 14.2 0.1 2.2 2 0 0 2 2 2 0 BCL7, N-terminal conserver region DUF2807 PF10988.8 BAD85331.1 - 0.068 13.0 1.1 0.09 12.6 1.1 1.2 1 0 0 1 1 1 0 Putative auto-transporter adhesin, head GIN domain PadR PF03551.14 BAD85332.1 - 5.8e-19 67.8 1.5 8.8e-19 67.2 0.5 1.8 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family RTP PF02334.16 BAD85332.1 - 0.00021 21.9 0.1 0.0014 19.3 0.0 2.0 1 1 1 2 2 2 1 Replication terminator protein DUF4364 PF14277.6 BAD85332.1 - 0.00038 20.2 0.2 0.00061 19.6 0.1 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4364) HTH_45 PF14947.6 BAD85332.1 - 0.0012 18.8 0.1 0.0024 17.8 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_34 PF13601.6 BAD85332.1 - 0.0015 18.6 0.0 0.003 17.7 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF1495 PF07381.11 BAD85332.1 - 0.0074 16.1 0.0 0.018 14.9 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) TrmB PF01978.19 BAD85332.1 - 0.0085 16.0 0.0 0.022 14.6 0.0 1.7 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Mrr_N PF14338.6 BAD85332.1 - 0.051 13.7 1.7 0.34 11.1 0.1 2.7 3 0 0 3 3 3 0 Mrr N-terminal domain HsdM_N PF12161.8 BAD85332.1 - 0.052 14.2 0.2 0.082 13.5 0.2 1.3 1 0 0 1 1 1 0 HsdM N-terminal domain Cdc6_C PF09079.11 BAD85332.1 - 0.065 13.2 0.0 0.13 12.3 0.0 1.6 1 0 0 1 1 1 0 CDC6, C terminal winged helix domain DUF3106 PF11304.8 BAD85332.1 - 0.086 13.3 0.1 0.14 12.6 0.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3106) AphA_like PF14557.6 BAD85332.1 - 0.097 12.4 0.1 0.26 11.0 0.0 1.7 2 1 0 2 2 2 0 Putative AphA-like transcriptional regulator Gp-FAR-1 PF05823.12 BAD85332.1 - 0.1 13.0 0.2 0.15 12.4 0.2 1.2 1 0 0 1 1 1 0 Nematode fatty acid retinoid binding protein (Gp-FAR-1) Stork_head PF10264.9 BAD85332.1 - 0.18 12.0 0.0 0.53 10.5 0.0 1.7 2 0 0 2 2 2 0 Winged helix Storkhead-box1 domain ABC_tran PF00005.27 BAD85333.1 - 3.7e-35 121.4 0.0 5.2e-35 120.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 BAD85333.1 - 1.4e-10 41.5 0.3 4.3e-07 30.0 0.1 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 BAD85333.1 - 2e-07 31.6 0.0 4.1e-07 30.6 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_15 PF13175.6 BAD85333.1 - 4.5e-05 23.3 0.0 0.14 11.8 0.1 2.1 1 1 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.6 BAD85333.1 - 0.00035 20.3 0.0 0.00065 19.4 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 BAD85333.1 - 0.002 18.7 0.4 0.0029 18.2 0.4 1.5 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 BAD85333.1 - 0.0059 17.0 0.1 0.052 14.0 0.1 2.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_27 PF13514.6 BAD85333.1 - 0.0084 15.7 0.0 0.016 14.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain SRP54 PF00448.22 BAD85333.1 - 0.015 14.9 0.0 0.025 14.2 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain SMC_N PF02463.19 BAD85333.1 - 0.058 12.8 0.0 0.26 10.7 0.0 1.8 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 BAD85333.1 - 0.1 12.3 0.0 0.24 11.1 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 BAD85333.1 - 0.17 12.3 0.1 0.28 11.5 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_13 PF13166.6 BAD85333.1 - 0.27 9.8 0.0 3.2 6.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain ABC2_membrane PF01061.24 BAD85334.1 - 2.3e-42 144.8 17.4 2.3e-42 144.8 17.4 1.6 1 1 1 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 BAD85334.1 - 4e-15 55.8 18.7 4e-15 55.8 18.7 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein PGK PF00162.19 BAD85335.1 - 4.1e-106 355.1 0.0 4.7e-106 354.9 0.0 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase CheD PF03975.13 BAD85335.1 - 0.018 15.1 0.3 1.4 9.0 0.0 3.4 3 1 1 4 4 4 0 CheD chemotactic sensory transduction Mrr_cat PF04471.12 BAD85336.1 - 4.2e-12 46.1 0.0 1e-11 44.9 0.0 1.7 1 0 0 1 1 1 1 Restriction endonuclease PepSY_like PF11396.8 BAD85336.1 - 0.035 14.7 8.4 0.68 10.5 0.3 4.1 4 0 0 4 4 4 0 Putative beta-lactamase-inhibitor-like, PepSY-like MerR_1 PF13411.6 BAD85336.1 - 0.037 14.1 1.2 3.6 7.8 0.3 2.6 2 0 0 2 2 2 0 MerR HTH family regulatory protein HMA PF00403.26 BAD85336.1 - 0.59 10.6 6.6 0.96 9.9 3.4 3.1 3 0 0 3 3 3 0 Heavy-metal-associated domain PAPS_reduct PF01507.19 BAD85337.1 - 0.027 14.5 0.3 0.045 13.8 0.1 1.5 2 0 0 2 2 2 0 Phosphoadenosine phosphosulfate reductase family LeuA_dimer PF08502.10 BAD85337.1 - 0.031 14.2 0.1 0.23 11.3 0.0 2.1 1 1 0 2 2 2 0 LeuA allosteric (dimerisation) domain Vac_Fusion PF02346.16 BAD85337.1 - 0.043 13.4 1.8 0.043 13.4 0.2 1.8 2 0 0 2 2 2 0 Chordopoxvirus multifunctional envelope protein A27 MM_CoA_mutase PF01642.22 BAD85338.1 - 2e-240 798.7 0.0 2.3e-240 798.5 0.0 1.0 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase ASH PF15780.5 BAD85339.1 - 0.085 13.1 0.5 3.7 7.8 0.0 3.3 4 0 0 4 4 4 0 Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin ABC2_membrane_2 PF12679.7 BAD85340.1 - 3.7e-15 56.0 20.1 9.5e-15 54.6 20.1 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 BAD85340.1 - 1.7e-07 31.4 13.0 1.7e-07 31.4 13.0 1.7 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 BAD85340.1 - 0.00025 20.7 16.1 0.00046 19.8 13.0 2.5 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 BAD85340.1 - 0.0012 18.1 16.3 0.0012 18.1 16.3 1.8 2 1 0 2 2 2 1 ABC-2 family transporter protein DUF4083 PF13314.6 BAD85340.1 - 4.1 7.4 7.4 0.53 10.3 0.1 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF4083) ABC_tran PF00005.27 BAD85341.1 - 3.2e-28 98.9 0.0 4.7e-28 98.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 BAD85341.1 - 2.5e-11 43.9 0.0 1.3e-06 28.5 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 BAD85341.1 - 0.0045 17.5 0.0 0.0063 17.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 BAD85341.1 - 0.016 14.9 0.0 3.3 7.3 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain SMC_N PF02463.19 BAD85341.1 - 0.035 13.5 0.1 1.4 8.3 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain SRP54 PF00448.22 BAD85341.1 - 0.056 13.1 0.4 0.38 10.4 0.2 2.0 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA PF00004.29 BAD85341.1 - 0.079 13.4 0.1 0.19 12.2 0.1 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 BAD85341.1 - 0.12 12.1 0.3 0.28 10.9 0.3 1.7 1 1 0 1 1 1 0 AAA domain Lactamase_B_2 PF12706.7 BAD85342.1 - 0.00021 20.9 0.2 0.0017 17.9 0.3 2.2 1 1 0 2 2 2 1 Beta-lactamase superfamily domain RMMBL PF07521.12 BAD85342.1 - 0.00059 19.7 0.0 0.0012 18.7 0.0 1.5 1 0 0 1 1 1 1 Zn-dependent metallo-hydrolase RNA specificity domain TubC_N PF18563.1 BAD85342.1 - 0.019 15.0 0.0 0.035 14.1 0.0 1.4 1 0 0 1 1 1 0 TubC N-terminal docking domain HSP20 PF00011.21 BAD85344.1 - 5.8e-20 71.3 0.8 7.3e-20 71.0 0.8 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 BAD85344.1 - 1.6e-14 53.2 0.1 2.2e-14 52.7 0.1 1.2 1 0 0 1 1 1 1 HSP20-like domain found in ArsA PIH1_CS PF18201.1 BAD85344.1 - 0.0016 18.8 0.0 0.0027 18.1 0.0 1.4 1 1 0 1 1 1 1 PIH1 CS-like domain CS PF04969.16 BAD85344.1 - 0.0043 18.1 0.0 0.0073 17.3 0.0 1.4 1 1 0 1 1 1 1 CS domain FKBP26_C PF18046.1 BAD85344.1 - 0.66 10.1 3.9 4.7 7.4 0.1 2.6 3 0 0 3 3 3 0 FKBP26_C-terminal DUF4261 PF14080.6 BAD85345.1 - 0.11 12.6 0.0 0.19 11.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4261) AAA PF00004.29 BAD85346.1 - 1.2e-104 346.1 0.3 7.1e-52 175.3 0.0 3.0 3 0 0 3 3 3 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.18 BAD85346.1 - 1.9e-37 127.3 1.1 2.9e-36 123.5 1.0 3.1 4 0 0 4 4 2 1 Cell division protein 48 (CDC48), N-terminal domain AAA_lid_3 PF17862.1 BAD85346.1 - 4e-31 106.6 12.1 1.7e-18 66.1 0.3 3.5 3 0 0 3 3 3 2 AAA+ lid domain AAA_2 PF07724.14 BAD85346.1 - 8.1e-18 65.1 0.0 3.2e-09 37.2 0.0 2.8 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 BAD85346.1 - 1.1e-17 64.2 0.6 9.6e-08 31.9 0.0 3.6 3 0 0 3 3 3 2 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 BAD85346.1 - 1.1e-15 58.4 2.2 7.2e-06 26.5 0.0 4.6 3 2 1 4 4 4 2 AAA ATPase domain CDC48_2 PF02933.17 BAD85346.1 - 2.8e-14 52.7 0.2 1.1e-13 50.8 0.1 2.1 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), domain 2 AAA_22 PF13401.6 BAD85346.1 - 5.8e-14 52.5 3.9 0.00084 19.6 0.0 5.5 4 2 2 6 6 5 2 AAA domain AAA_14 PF13173.6 BAD85346.1 - 4.1e-13 49.5 0.0 1.7e-05 24.8 0.0 3.2 3 0 0 3 3 3 2 AAA domain AAA_5 PF07728.14 BAD85346.1 - 2.2e-12 47.2 1.5 0.00012 22.1 0.0 4.2 3 2 0 3 3 2 2 AAA domain (dynein-related subfamily) TIP49 PF06068.13 BAD85346.1 - 1.1e-11 44.6 0.4 0.00016 21.0 0.0 3.0 3 0 0 3 3 3 2 TIP49 P-loop domain AAA_33 PF13671.6 BAD85346.1 - 1.1e-10 41.8 0.0 0.0004 20.6 0.0 2.6 2 0 0 2 2 2 2 AAA domain Vps4_C PF09336.10 BAD85346.1 - 7.8e-09 35.4 0.0 0.00016 21.6 0.0 2.9 2 0 0 2 2 2 2 Vps4 C terminal oligomerisation domain AAA_25 PF13481.6 BAD85346.1 - 1.5e-08 34.5 2.1 1.2 8.7 0.0 4.5 4 0 0 4 4 4 2 AAA domain AAA_18 PF13238.6 BAD85346.1 - 1.8e-08 35.0 0.3 0.012 16.2 0.0 3.1 3 0 0 3 3 2 2 AAA domain IstB_IS21 PF01695.17 BAD85346.1 - 2.6e-08 33.8 0.1 0.0071 16.1 0.0 2.9 3 0 0 3 3 2 2 IstB-like ATP binding protein Sigma54_activat PF00158.26 BAD85346.1 - 6.4e-08 32.5 0.1 0.032 13.9 0.0 4.0 2 2 0 2 2 2 2 Sigma-54 interaction domain AAA_24 PF13479.6 BAD85346.1 - 9.5e-08 32.0 0.0 0.013 15.2 0.0 2.7 2 0 0 2 2 2 2 AAA domain RNA_helicase PF00910.22 BAD85346.1 - 1.3e-07 31.9 0.0 0.023 15.1 0.0 2.7 2 0 0 2 2 2 2 RNA helicase Bac_DnaA PF00308.18 BAD85346.1 - 2.3e-07 30.9 0.0 0.0088 15.9 0.0 2.9 3 0 0 3 3 3 2 Bacterial dnaA protein AAA_28 PF13521.6 BAD85346.1 - 3.8e-07 30.5 0.0 0.024 14.9 0.0 2.8 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 BAD85346.1 - 5.3e-07 29.2 0.4 0.035 13.5 0.1 2.6 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI ATPase_2 PF01637.18 BAD85346.1 - 5.5e-07 29.7 1.6 0.011 15.6 0.0 3.7 3 1 0 3 3 3 2 ATPase domain predominantly from Archaea DUF815 PF05673.13 BAD85346.1 - 1.6e-06 27.5 0.0 0.045 12.9 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF815) AAA_7 PF12775.7 BAD85346.1 - 2.3e-06 27.3 0.0 0.077 12.5 0.0 2.7 2 1 0 2 2 2 2 P-loop containing dynein motor region NACHT PF05729.12 BAD85346.1 - 4.2e-06 26.8 0.1 0.99 9.3 0.0 4.1 4 0 0 4 4 4 2 NACHT domain ABC_tran PF00005.27 BAD85346.1 - 5.7e-06 26.9 0.0 0.14 12.7 0.0 2.9 2 1 0 2 2 2 2 ABC transporter TsaE PF02367.17 BAD85346.1 - 8.6e-06 25.8 0.0 0.13 12.2 0.0 2.7 2 1 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_3 PF07726.11 BAD85346.1 - 4.5e-05 23.3 0.0 0.46 10.4 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) DUF2075 PF09848.9 BAD85346.1 - 5e-05 22.7 0.0 0.098 11.9 0.0 2.5 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) PhoH PF02562.16 BAD85346.1 - 5.7e-05 22.7 0.3 0.36 10.3 0.0 2.9 2 0 0 2 2 2 2 PhoH-like protein Parvo_NS1 PF01057.17 BAD85346.1 - 5.9e-05 22.3 0.1 0.3 10.1 0.0 2.3 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 Zeta_toxin PF06414.12 BAD85346.1 - 8.9e-05 21.8 3.5 0.26 10.5 0.1 3.3 4 0 0 4 4 3 2 Zeta toxin AAA_11 PF13086.6 BAD85346.1 - 0.00018 21.4 0.1 0.74 9.6 0.0 2.9 3 0 0 3 3 3 2 AAA domain NB-ARC PF00931.22 BAD85346.1 - 0.0002 20.7 0.0 0.85 8.7 0.0 2.8 2 0 0 2 2 2 2 NB-ARC domain AAA_30 PF13604.6 BAD85346.1 - 0.0002 21.1 0.2 1.2 8.9 0.0 3.2 2 1 0 2 2 2 2 AAA domain AAA_17 PF13207.6 BAD85346.1 - 0.00021 21.7 0.3 2.3 8.7 0.0 3.6 3 0 0 3 3 3 1 AAA domain ATPase PF06745.13 BAD85346.1 - 0.00066 19.1 10.7 0.37 10.1 0.0 4.6 3 2 1 5 5 5 2 KaiC AAA_19 PF13245.6 BAD85346.1 - 0.0011 19.3 2.1 1.7 9.0 0.2 3.2 2 2 1 3 3 2 2 AAA domain Sigma54_activ_2 PF14532.6 BAD85346.1 - 0.0022 18.1 0.0 3.3 7.8 0.0 2.5 2 0 0 2 2 2 0 Sigma-54 interaction domain TniB PF05621.11 BAD85346.1 - 0.0023 17.3 0.8 16 4.9 0.0 4.5 3 2 2 5 5 5 0 Bacterial TniB protein Zot PF05707.12 BAD85346.1 - 0.0035 17.0 0.0 0.47 10.1 0.0 2.9 2 1 0 2 2 2 1 Zonular occludens toxin (Zot) KAP_NTPase PF07693.14 BAD85346.1 - 0.0068 15.7 0.6 13 4.9 0.0 3.8 2 2 0 4 4 4 0 KAP family P-loop domain SKI PF01202.22 BAD85346.1 - 0.0081 16.3 0.7 13 5.9 0.0 3.6 3 0 0 3 3 3 0 Shikimate kinase ATP-synt_ab PF00006.25 BAD85346.1 - 0.0088 15.7 0.0 3 7.5 0.0 2.5 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain Viral_helicase1 PF01443.18 BAD85346.1 - 0.0089 15.8 0.0 0.44 10.2 0.0 2.3 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase NTPase_1 PF03266.15 BAD85346.1 - 0.016 15.1 7.9 9.5 6.1 0.0 5.4 4 2 2 6 6 5 0 NTPase T2SSE PF00437.20 BAD85346.1 - 0.017 14.2 0.0 5.6 5.9 0.0 2.6 2 1 0 2 2 2 0 Type II/IV secretion system protein Cytidylate_kin PF02224.18 BAD85346.1 - 0.024 14.4 0.9 5.8 6.6 0.0 2.9 3 0 0 3 3 2 0 Cytidylate kinase DnaG_DnaB_bind PF08278.11 BAD85346.1 - 0.046 14.3 1.8 16 6.1 0.0 3.0 3 0 0 3 3 2 0 DNA primase DnaG DnaB-binding AFG1_ATPase PF03969.16 BAD85346.1 - 0.047 12.6 0.1 5.4 5.8 0.0 2.4 2 0 0 2 2 2 0 AFG1-like ATPase IPT PF01745.16 BAD85346.1 - 0.047 13.1 0.3 14 4.9 0.0 2.9 3 0 0 3 3 2 0 Isopentenyl transferase ResIII PF04851.15 BAD85346.1 - 0.051 13.6 0.0 9.3 6.2 0.0 2.7 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit cobW PF02492.19 BAD85346.1 - 0.056 13.0 0.0 16 5.1 0.0 2.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain SPO22 PF08631.10 BAD85346.1 - 0.067 12.7 0.4 0.15 11.6 0.4 1.5 1 0 0 1 1 1 0 Meiosis protein SPO22/ZIP4 like DUF1905 PF08922.11 BAD85346.1 - 0.077 13.1 0.5 3.6 7.7 0.1 2.8 1 1 1 2 2 2 0 Domain of unknown function (DUF1905) DAP3 PF10236.9 BAD85346.1 - 0.085 12.0 0.0 11 5.0 0.0 2.5 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 CPT PF07931.12 BAD85346.1 - 0.09 12.6 0.0 23 4.8 0.0 3.1 2 1 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein PduV-EutP PF10662.9 BAD85346.1 - 0.1 12.4 0.0 20 4.9 0.0 2.6 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Molydop_binding PF01568.21 BAD85346.1 - 0.11 12.5 0.0 1.5 8.9 0.0 2.7 3 0 0 3 3 2 0 Molydopterin dinucleotide binding domain Ead_Ea22 PF13935.6 BAD85346.1 - 0.19 12.4 5.4 3.5 8.3 3.6 3.2 3 0 0 3 3 2 0 Ead/Ea22-like protein DUF1456 PF07308.13 BAD85346.1 - 0.22 11.9 0.5 3.5 8.0 0.1 3.2 3 0 0 3 3 2 0 Protein of unknown function (DUF1456) N6_Mtase PF02384.16 BAD85347.1 - 1.2e-08 34.6 0.0 1.1e-06 28.1 0.0 2.3 2 0 0 2 2 2 1 N-6 DNA Methylase UPF0020 PF01170.18 BAD85347.1 - 0.00019 21.2 0.0 0.0028 17.4 0.0 2.5 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 Methyltransf_23 PF13489.6 BAD85347.1 - 0.00056 19.8 0.0 0.078 12.8 0.0 3.3 3 0 0 3 3 3 1 Methyltransferase domain Seryl_tRNA_N PF02403.22 BAD85347.1 - 0.0034 17.6 5.3 0.0034 17.6 5.3 2.4 2 0 0 2 2 2 1 Seryl-tRNA synthetase N-terminal domain FapA PF03961.13 BAD85347.1 - 0.011 14.4 3.2 0.019 13.6 3.2 1.3 1 0 0 1 1 1 0 Flagellar Assembly Protein A TipAS PF07739.13 BAD85347.1 - 0.011 16.2 5.2 0.55 10.8 0.0 3.4 3 0 0 3 3 3 0 TipAS antibiotic-recognition domain DUF3450 PF11932.8 BAD85347.1 - 0.044 13.1 3.6 0.07 12.4 2.5 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) Methyltransf_31 PF13847.6 BAD85347.1 - 0.058 13.2 0.0 0.24 11.2 0.0 2.0 1 0 0 1 1 1 0 Methyltransferase domain DUF1664 PF07889.12 BAD85347.1 - 0.066 13.2 5.3 0.037 14.0 2.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) Prp18 PF02840.15 BAD85347.1 - 0.075 13.1 0.1 0.27 11.3 0.0 2.0 2 0 0 2 2 1 0 Prp18 domain ATG16 PF08614.11 BAD85347.1 - 0.075 13.2 5.4 0.16 12.2 5.4 1.4 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) Spc7 PF08317.11 BAD85347.1 - 0.077 11.9 5.4 0.16 10.8 5.4 1.4 1 0 0 1 1 1 0 Spc7 kinetochore protein Eco57I PF07669.11 BAD85347.1 - 0.08 13.5 0.0 0.76 10.3 0.0 2.5 2 0 0 2 2 2 0 Eco57I restriction-modification methylase DUF1640 PF07798.11 BAD85347.1 - 0.095 12.7 4.0 0.29 11.1 4.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF1640) TMPIT PF07851.13 BAD85347.1 - 0.098 11.9 2.3 0.2 10.9 2.3 1.4 1 0 0 1 1 1 0 TMPIT-like protein RB_A PF01858.17 BAD85347.1 - 0.16 11.8 0.5 4.9 6.9 0.0 2.4 2 0 0 2 2 2 0 Retinoblastoma-associated protein A domain VPS38 PF17649.1 BAD85347.1 - 0.19 10.6 2.5 0.43 9.4 2.5 1.5 1 0 0 1 1 1 0 Vacuolar protein sorting 38 AAA_32 PF13654.6 BAD85347.1 - 0.22 10.3 4.3 0.57 8.9 4.3 1.6 1 0 0 1 1 1 0 AAA domain LMP PF04778.12 BAD85347.1 - 0.6 10.0 4.1 1.4 8.8 4.1 1.5 1 0 0 1 1 1 0 LMP repeated region DUF2408 PF10303.9 BAD85347.1 - 0.61 10.6 4.4 1.5 9.4 3.8 2.1 2 0 0 2 2 1 0 Protein of unknown function (DUF2408) AAA_13 PF13166.6 BAD85347.1 - 0.75 8.4 5.4 1.4 7.5 5.4 1.3 1 0 0 1 1 1 0 AAA domain Cnn_1N PF07989.11 BAD85347.1 - 0.96 9.6 11.1 3.6 7.8 11.1 2.1 1 0 0 1 1 1 0 Centrosomin N-terminal motif 1 Syntaxin_2 PF14523.6 BAD85347.1 - 0.97 9.8 6.1 0.35 11.3 2.2 2.3 2 0 0 2 2 2 0 Syntaxin-like protein GTP-bdg_M PF16360.5 BAD85347.1 - 1 10.0 5.5 3.1 8.5 5.5 1.9 1 0 0 1 1 1 0 GTP-binding GTPase Middle Region ApoLp-III PF07464.11 BAD85347.1 - 2 8.5 4.7 2.3 8.3 1.2 2.7 2 0 0 2 2 2 0 Apolipophorin-III precursor (apoLp-III) Snapin_Pallidin PF14712.6 BAD85347.1 - 2 8.9 4.4 15 6.1 4.3 2.5 1 1 1 2 2 2 0 Snapin/Pallidin DUF4140 PF13600.6 BAD85347.1 - 3.2 8.3 6.9 72 3.9 6.9 2.7 1 1 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) Apolipoprotein PF01442.18 BAD85347.1 - 6.4 6.6 11.8 1.8 8.4 5.1 2.9 3 0 0 3 3 3 0 Apolipoprotein A1/A4/E domain CRM1_repeat_2 PF18784.1 BAD85348.1 - 0.0029 17.2 0.0 0.0034 17.0 0.0 1.2 1 0 0 1 1 1 1 CRM1 / Exportin repeat 2 KGG PF10685.9 BAD85348.1 - 0.21 11.9 0.4 0.34 11.3 0.4 1.3 1 0 0 1 1 1 0 Stress-induced bacterial acidophilic repeat motif Pterin_bind PF00809.22 BAD85350.1 - 6.8e-61 206.0 0.0 8e-61 205.8 0.0 1.0 1 0 0 1 1 1 1 Pterin binding enzyme CdhD PF03599.16 BAD85350.1 - 0.00037 19.3 0.0 0.0005 18.9 0.0 1.2 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase delta subunit DUF561 PF04481.12 BAD85350.1 - 0.021 14.0 0.3 0.058 12.6 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF561) QRPTase_C PF01729.19 BAD85350.1 - 0.08 12.7 0.1 0.14 11.9 0.1 1.4 1 0 0 1 1 1 0 Quinolinate phosphoribosyl transferase, C-terminal domain AI-2E_transport PF01594.16 BAD85351.1 - 7e-30 104.3 29.8 2.6e-29 102.4 29.8 1.7 1 1 0 1 1 1 1 AI-2E family transporter Ph1570 PF09638.10 BAD85352.1 - 5.1e-94 312.3 2.9 5.9e-94 312.1 2.9 1.0 1 0 0 1 1 1 1 Ph1570 protein Peptidase_S49 PF01343.18 BAD85353.1 - 1.4e-41 142.0 0.3 2e-41 141.5 0.3 1.2 1 0 0 1 1 1 1 Peptidase family S49 CLP_protease PF00574.23 BAD85353.1 - 0.00044 20.2 0.2 0.0008 19.3 0.2 1.4 1 0 0 1 1 1 1 Clp protease AP_endonuc_2 PF01261.24 BAD85354.1 - 9.6e-16 57.9 0.0 1.2e-15 57.5 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel MukF_C PF17193.4 BAD85354.1 - 0.036 14.2 0.0 0.063 13.4 0.0 1.5 1 0 0 1 1 1 0 MukF C-terminal domain Glyco_hydro_67M PF07488.12 BAD85354.1 - 0.076 12.1 0.1 0.11 11.6 0.1 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 67 middle domain Ribonucleas_3_2 PF11469.8 BAD85355.1 - 4.7e-64 214.1 0.1 5.4e-64 214.0 0.1 1.0 1 0 0 1 1 1 1 Ribonuclease III RNA_pol_L_2 PF13656.6 BAD85356.1 - 6.2e-21 74.0 0.1 7.3e-21 73.7 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.24 BAD85356.1 - 1.1e-10 40.8 0.0 1.4e-10 40.4 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Cadherin_pro PF08758.11 BAD85356.1 - 0.026 14.7 0.0 0.03 14.5 0.0 1.3 1 0 0 1 1 1 0 Cadherin prodomain like DUF2067 PF09840.9 BAD85357.1 - 4.4e-52 176.4 5.8 5.1e-52 176.2 5.8 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2067) GH3 PF03321.13 BAD85357.1 - 0.052 12.4 0.0 0.073 11.9 0.0 1.2 1 0 0 1 1 1 0 GH3 auxin-responsive promoter ECR1_N PF14382.6 BAD85358.1 - 3e-09 36.5 0.0 6.6e-09 35.4 0.0 1.6 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region EXOSC1 PF10447.9 BAD85358.1 - 2.1e-06 28.3 6.8 2.3e-05 25.0 1.2 3.0 2 1 1 3 3 3 1 Exosome component EXOSC1/CSL4 S1 PF00575.23 BAD85358.1 - 4.1e-06 27.1 3.3 0.014 15.7 0.1 2.5 2 0 0 2 2 2 2 S1 RNA binding domain Auto_anti-p27 PF06677.12 BAD85358.1 - 0.0021 18.2 1.7 0.0033 17.6 1.7 1.3 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DZR PF12773.7 BAD85358.1 - 0.016 15.2 0.3 0.026 14.5 0.3 1.2 1 0 0 1 1 1 0 Double zinc ribbon Prok-RING_1 PF14446.6 BAD85358.1 - 0.017 15.1 0.3 0.031 14.2 0.3 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zinc_ribbon_2 PF13240.6 BAD85358.1 - 0.05 13.3 0.8 9.9 6.0 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain A2L_zn_ribbon PF08792.10 BAD85358.1 - 0.11 12.3 0.1 0.27 11.0 0.1 1.7 1 0 0 1 1 1 0 A2L zinc ribbon domain NOB1_Zn_bind PF08772.11 BAD85358.1 - 0.11 12.6 0.3 0.21 11.8 0.3 1.4 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like Zn_Tnp_IS1595 PF12760.7 BAD85358.1 - 0.25 11.4 1.5 0.39 10.7 0.0 1.9 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zf-FPG_IleRS PF06827.14 BAD85358.1 - 0.39 10.6 5.0 3.6 7.6 0.2 2.4 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS HscB_4_cys PF18256.1 BAD85358.1 - 0.68 9.8 3.1 4.2 7.3 0.1 2.3 2 0 0 2 2 2 0 Co-chaperone HscB tetracysteine metal binding motif tRNA-Thr_ED PF08915.11 BAD85359.1 - 1.5e-56 190.3 0.3 3.2e-56 189.2 0.3 1.6 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase HGTP_anticodon PF03129.20 BAD85359.1 - 1.9e-25 88.8 5.1 5.1e-25 87.5 2.0 2.8 2 0 0 2 2 2 1 Anticodon binding domain tRNA-synt_2b PF00587.25 BAD85359.1 - 2e-19 70.3 0.2 4e-19 69.3 0.2 1.5 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) RACo_linker PF17650.1 BAD85359.1 - 0.037 13.9 0.0 2.6 8.0 0.0 2.8 2 0 0 2 2 2 0 RACo linker region RNA_pol_L_2 PF13656.6 BAD85359.1 - 0.15 11.8 0.5 0.59 10.0 0.1 2.2 2 0 0 2 2 2 0 RNA polymerase Rpb3/Rpb11 dimerisation domain DUF3141 PF11339.8 BAD85360.1 - 0.032 12.7 0.0 0.047 12.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3141) TBPIP_N PF15517.6 BAD85361.1 - 7.7e-55 183.1 1.1 1.3e-54 182.4 1.1 1.4 1 0 0 1 1 1 1 TBP-interacting protein N-terminus zf-C2H2 PF00096.26 BAD85361.1 - 0.011 16.2 0.2 0.032 14.7 0.0 1.9 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf_C2H2_13 PF18508.1 BAD85361.1 - 0.011 15.3 0.5 0.041 13.5 0.4 1.9 1 1 1 2 2 2 0 Zinc finger domain zf_UBZ PF18439.1 BAD85361.1 - 0.032 13.8 0.1 0.032 13.8 0.1 1.7 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-C2H2_4 PF13894.6 BAD85361.1 - 0.048 14.5 0.1 0.21 12.5 0.0 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger Desulfoferrod_N PF06397.12 BAD85361.1 - 0.058 13.0 0.2 0.13 11.9 0.2 1.6 1 0 0 1 1 1 0 Desulfoferrodoxin, N-terminal domain Prenyltransf PF01255.19 BAD85362.1 - 1.5e-82 276.5 0.1 1.7e-82 276.3 0.1 1.0 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase TAFH PF07531.14 BAD85362.1 - 0.015 15.4 0.0 0.047 13.8 0.0 1.8 2 0 0 2 2 2 0 NHR1 homology to TAF 7TMR-HDED PF07697.11 BAD85362.1 - 0.027 14.6 0.1 0.039 14.1 0.1 1.1 1 0 0 1 1 1 0 7TM-HD extracellular RNA_pol_Rpb1_6 PF04992.14 BAD85362.1 - 0.065 13.1 0.6 0.091 12.6 0.6 1.2 1 0 0 1 1 1 0 RNA polymerase Rpb1, domain 6 CDPS PF16715.5 BAD85362.1 - 0.091 12.4 0.2 0.22 11.2 0.1 1.6 1 1 1 2 2 2 0 Cyclodipeptide synthase DUF4657 PF15552.6 BAD85362.1 - 0.17 11.4 0.0 0.24 10.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4657) Hexapep PF00132.24 BAD85363.1 - 5.4e-14 51.3 11.3 6.2e-07 28.9 2.3 4.0 3 1 1 4 4 4 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 BAD85363.1 - 3e-06 26.9 2.7 0.0034 17.1 0.3 2.7 2 0 0 2 2 2 2 Hexapeptide repeat of succinyl-transferase Hjc PF01870.18 BAD85364.1 - 3.4e-28 97.5 0.0 4e-28 97.2 0.0 1.1 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) UPF0102 PF02021.17 BAD85364.1 - 0.00038 20.6 0.0 0.00065 19.9 0.0 1.4 1 0 0 1 1 1 1 Uncharacterised protein family UPF0102 HicA_toxin PF07927.12 BAD85364.1 - 0.00066 19.7 0.1 0.0016 18.4 0.1 1.6 1 0 0 1 1 1 1 HicA toxin of bacterial toxin-antitoxin, AHJR-like PF18743.1 BAD85364.1 - 0.0072 15.9 0.0 0.015 14.8 0.0 1.6 1 1 0 1 1 1 1 REase_AHJR-like CarD_CdnL_TRCF PF02559.16 BAD85364.1 - 0.05 14.3 0.0 0.057 14.1 0.0 1.3 1 0 0 1 1 1 0 CarD-like/TRCF domain CarboxypepD_reg PF13620.6 BAD85365.1 - 0.00013 22.2 16.6 0.046 14.0 1.0 5.5 6 1 1 7 7 7 2 Carboxypeptidase regulatory-like domain Big_3 PF07523.12 BAD85365.1 - 0.0052 17.1 2.0 0.086 13.2 0.2 3.6 3 0 0 3 3 3 1 Bacterial Ig-like domain (group 3) DUF4198 PF10670.9 BAD85365.1 - 0.054 13.9 0.1 2.7 8.3 0.0 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4198) Filamin PF00630.19 BAD85365.1 - 0.057 14.2 0.2 0.87 10.4 0.1 2.9 3 1 0 3 3 3 0 Filamin/ABP280 repeat MG4 PF17789.1 BAD85365.1 - 0.065 13.4 4.6 1.9 8.7 0.0 4.1 4 1 1 5 5 5 0 Macroglobulin domain MG4 CARDB PF07705.11 BAD85365.1 - 0.1 12.9 5.8 0.64 10.3 0.1 3.1 3 0 0 3 3 3 0 CARDB SdrD_B PF17210.3 BAD85365.1 - 4.8 7.4 9.0 8.9 6.6 0.2 4.0 3 1 0 3 3 3 0 SdrD B-like domain Peptidase_M42 PF05343.14 BAD85366.1 - 5.8e-97 324.2 0.3 6.7e-97 324.0 0.3 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.28 BAD85366.1 - 6.7e-08 32.5 0.2 1.9e-07 31.0 0.2 1.7 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M18 PF02127.15 BAD85366.1 - 3.3e-05 22.9 0.0 0.03 13.1 0.0 2.6 1 1 2 3 3 3 2 Aminopeptidase I zinc metalloprotease (M18) Peptidase_M28 PF04389.17 BAD85366.1 - 0.00026 20.7 0.6 0.037 13.7 0.0 2.3 2 0 0 2 2 2 2 Peptidase family M28 Peptidase_M54 PF07998.11 BAD85367.1 - 1.2e-32 113.5 0.2 1e-31 110.5 0.2 1.9 1 1 0 1 1 1 1 Peptidase family M54 Metallopep PF12044.8 BAD85367.1 - 0.0022 16.7 0.6 0.003 16.2 0.6 1.1 1 0 0 1 1 1 1 Putative peptidase family Peptidase_M10 PF00413.24 BAD85367.1 - 0.0032 17.3 0.0 0.0048 16.8 0.0 1.2 1 0 0 1 1 1 1 Matrixin Reprolysin_3 PF13582.6 BAD85367.1 - 0.0053 17.3 0.0 0.0069 16.9 0.0 1.3 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_5 PF13688.6 BAD85367.1 - 0.021 15.0 0.0 0.022 14.9 0.0 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12 Peptidase_M43 PF05572.13 BAD85367.1 - 0.021 14.8 0.0 0.028 14.3 0.0 1.2 1 0 0 1 1 1 0 Pregnancy-associated plasma protein-A Peptidase_M66 PF10462.9 BAD85367.1 - 0.045 12.7 0.1 0.066 12.1 0.1 1.2 1 0 0 1 1 1 0 Peptidase M66 Reprolysin_2 PF13574.6 BAD85367.1 - 0.062 13.2 0.0 0.065 13.1 0.0 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like DUF4953 PF16313.5 BAD85367.1 - 0.13 11.4 0.1 0.18 11.0 0.1 1.1 1 0 0 1 1 1 0 Met-zincin Reprolysin_4 PF13583.6 BAD85367.1 - 0.17 11.5 0.0 0.22 11.1 0.0 1.3 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like CYTH PF01928.21 BAD85368.1 - 1.1e-37 129.7 4.0 1.2e-37 129.6 4.0 1.0 1 0 0 1 1 1 1 CYTH domain TPR_19 PF14559.6 BAD85369.1 - 0.00048 20.6 0.6 0.0058 17.1 0.1 2.8 2 1 1 3 3 3 1 Tetratricopeptide repeat TPR_12 PF13424.6 BAD85369.1 - 0.0077 16.5 0.5 0.27 11.6 0.6 2.5 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_2 PF07719.17 BAD85369.1 - 0.052 13.7 1.1 3 8.2 0.0 3.3 3 1 0 3 3 3 0 Tetratricopeptide repeat TPR_14 PF13428.6 BAD85369.1 - 0.063 14.1 0.7 4.9 8.2 0.1 3.1 2 1 1 3 3 3 0 Tetratricopeptide repeat TPR_6 PF13174.6 BAD85369.1 - 0.15 12.8 0.1 23 5.9 0.0 3.5 3 0 0 3 3 3 0 Tetratricopeptide repeat ABC_tran PF00005.27 BAD85370.1 - 1.4e-21 77.5 0.0 1.8e-21 77.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 BAD85370.1 - 1.1e-05 25.0 0.2 0.0003 20.3 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 BAD85370.1 - 0.00037 20.2 0.2 0.00073 19.2 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 BAD85370.1 - 0.0066 16.9 0.0 0.0091 16.4 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.6 BAD85370.1 - 0.0072 15.9 0.0 1 8.9 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_24 PF13479.6 BAD85370.1 - 0.025 14.3 0.2 0.063 13.0 0.1 1.7 2 0 0 2 2 2 0 AAA domain ABC_ATPase PF09818.9 BAD85370.1 - 0.042 12.6 0.1 6.3 5.5 0.1 2.5 2 1 1 3 3 3 0 Predicted ATPase of the ABC class AAA_22 PF13401.6 BAD85370.1 - 0.049 13.9 0.1 0.24 11.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 BAD85370.1 - 0.066 13.1 0.2 0.14 12.1 0.0 1.6 2 0 0 2 2 2 0 RsgA GTPase PhoH PF02562.16 BAD85370.1 - 0.068 12.6 0.0 0.14 11.6 0.0 1.5 2 0 0 2 2 2 0 PhoH-like protein AAA_21 PF13304.6 BAD85370.1 - 0.072 12.9 0.1 0.14 12.0 0.1 1.5 1 0 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system RuvA_C PF07499.13 BAD85370.1 - 0.15 12.5 0.1 0.46 11.0 0.0 1.8 2 0 0 2 2 2 0 RuvA, C-terminal domain AAA_18 PF13238.6 BAD85370.1 - 0.16 12.5 2.6 4.2 7.9 0.8 2.3 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 BAD85370.1 - 0.24 11.1 0.6 1.2 8.9 0.6 1.9 1 1 0 1 1 1 0 AAA domain TrkH PF02386.16 BAD85371.1 - 2.6e-68 230.7 19.9 2e-67 227.8 19.9 1.8 1 1 0 1 1 1 1 Cation transport protein Peptidase_M24 PF00557.24 BAD85372.1 - 3.7e-45 154.2 0.2 4.3e-45 154.0 0.2 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 CNF1 PF05785.12 BAD85372.1 - 0.058 12.7 0.0 0.11 11.8 0.0 1.4 1 0 0 1 1 1 0 Rho-activating domain of cytotoxic necrotizing factor HTH_Tnp_1_2 PF13022.6 BAD85373.1 - 0.0011 19.1 2.7 0.0018 18.4 2.7 1.3 1 1 0 1 1 1 1 Helix-turn-helix of insertion element transposase DUF4298 PF14131.6 BAD85373.1 - 0.008 16.1 1.6 1.5 8.9 0.4 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF4298) IF2_N PF04760.15 BAD85373.1 - 0.034 14.0 1.7 0.14 12.0 0.0 2.5 3 0 0 3 3 3 0 Translation initiation factor IF-2, N-terminal region DUF1153 PF06627.11 BAD85373.1 - 0.33 11.1 2.6 0.43 10.8 0.7 1.9 1 1 0 2 2 2 0 Protein of unknown function (DUF1153) PIN_3 PF13470.6 BAD85374.1 - 1.5e-19 70.8 0.0 1.9e-19 70.6 0.0 1.1 1 0 0 1 1 1 1 PIN domain PIN_2 PF10130.9 BAD85374.1 - 0.0043 17.3 0.1 0.0053 17.0 0.1 1.2 1 0 0 1 1 1 1 PIN domain PIN PF01850.21 BAD85374.1 - 0.049 14.1 0.3 0.071 13.6 0.3 1.2 1 0 0 1 1 1 0 PIN domain DUF1836 PF08876.11 BAD85374.1 - 0.72 9.9 5.2 0.44 10.6 2.7 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF1836) CBS PF00571.28 BAD85375.1 - 6.1e-42 141.9 16.7 2e-16 60.1 0.6 4.4 4 0 0 4 4 4 4 CBS domain Hrs_helical PF12210.8 BAD85375.1 - 0.017 15.6 0.0 0.057 14.0 0.0 1.8 1 0 0 1 1 1 0 Hepatocyte growth factor-regulated tyrosine kinase substrate GAF PF01590.26 BAD85375.1 - 0.025 15.2 0.0 2.4 8.8 0.0 2.8 3 0 0 3 3 3 0 GAF domain PRC PF05239.16 BAD85375.1 - 0.096 12.8 1.6 14 5.8 0.2 3.2 3 0 0 3 3 3 0 PRC-barrel domain DUF835 PF05763.12 BAD85376.1 - 1.6e-37 128.3 0.3 2.2e-37 127.8 0.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF835) DUF2070 PF09843.9 BAD85376.1 - 0.34 9.1 13.9 0.46 8.7 13.9 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) CclA_1 PF16942.5 BAD85376.1 - 3.1 8.1 7.4 4.8 7.5 1.7 2.7 2 1 0 2 2 2 0 Putative cyclic bacteriocin NTP_transferase PF00483.23 BAD85377.1 - 2.4e-39 135.4 0.0 3.1e-39 135.0 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 BAD85377.1 - 4.9e-20 70.4 28.3 9.5e-10 37.8 1.6 4.9 2 1 3 5 5 5 5 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 BAD85377.1 - 9e-17 61.9 0.0 1.2e-16 61.5 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.6 BAD85377.1 - 7.8e-13 47.9 22.5 9e-09 34.9 0.5 4.6 4 0 0 4 4 4 4 Hexapeptide repeat of succinyl-transferase IspD PF01128.19 BAD85377.1 - 9.5e-05 22.2 0.0 0.00016 21.5 0.0 1.4 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DUF4954 PF16314.5 BAD85377.1 - 0.08 11.1 1.6 0.13 10.4 1.6 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4954) BacA PF02673.18 BAD85378.1 - 4.3e-24 85.6 9.4 5.4e-24 85.3 9.4 1.0 1 0 0 1 1 1 1 Bacitracin resistance protein BacA NOG1_N PF17835.1 BAD85379.1 - 2.8e-54 183.4 1.4 2.8e-54 183.4 1.4 1.7 2 0 0 2 2 2 1 NOG1 N-terminal helical domain NOG1 PF06858.14 BAD85379.1 - 2.4e-24 84.9 0.0 4.7e-24 83.9 0.0 1.5 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) MMR_HSR1 PF01926.23 BAD85379.1 - 3.1e-22 78.8 0.0 6.4e-22 77.8 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 BAD85379.1 - 3e-19 69.1 0.0 4.9e-19 68.4 0.0 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B RsgA_GTPase PF03193.16 BAD85379.1 - 7.3e-10 39.0 0.0 0.00033 20.6 0.0 2.8 2 1 0 2 2 2 2 RsgA GTPase GTP_EFTU PF00009.27 BAD85379.1 - 3.4e-06 26.7 0.1 0.2 11.2 0.1 3.3 1 1 1 2 2 2 2 Elongation factor Tu GTP binding domain PduV-EutP PF10662.9 BAD85379.1 - 4.1e-06 26.6 0.0 1.3e-05 25.0 0.0 1.8 1 1 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation Ras PF00071.22 BAD85379.1 - 1.8e-05 24.4 0.0 8.7e-05 22.2 0.0 1.9 1 1 0 1 1 1 1 Ras family Arf PF00025.21 BAD85379.1 - 1.9e-05 24.2 0.0 0.00023 20.6 0.0 2.2 1 1 0 1 1 1 1 ADP-ribosylation factor family MMR_HSR1_Xtn PF16897.5 BAD85379.1 - 0.00014 21.9 0.0 0.00045 20.2 0.0 1.9 2 0 0 2 2 1 1 C-terminal region of MMR_HSR1 domain ATP_bind_1 PF03029.17 BAD85379.1 - 0.00024 21.0 0.0 0.014 15.2 0.0 2.3 1 1 1 2 2 2 1 Conserved hypothetical ATP binding protein AAA_16 PF13191.6 BAD85379.1 - 0.00051 20.5 0.0 0.0053 17.1 0.0 2.5 1 1 1 2 2 2 1 AAA ATPase domain cobW PF02492.19 BAD85379.1 - 0.0019 17.8 0.0 0.7 9.5 0.0 2.3 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain MeaB PF03308.16 BAD85379.1 - 0.0026 16.8 0.1 1.8 7.5 0.0 2.8 3 0 0 3 3 3 2 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_18 PF13238.6 BAD85379.1 - 0.0067 17.0 0.0 0.044 14.3 0.0 2.3 1 1 0 2 2 2 1 AAA domain AIG1 PF04548.16 BAD85379.1 - 0.0081 15.5 0.0 0.017 14.5 0.0 1.6 1 0 0 1 1 1 1 AIG1 family Dynamin_N PF00350.23 BAD85379.1 - 0.0099 15.9 0.0 2.6 8.1 0.0 2.5 1 1 1 2 2 2 1 Dynamin family AAA_28 PF13521.6 BAD85379.1 - 0.022 15.0 0.1 0.41 10.9 0.0 2.9 3 0 0 3 3 3 0 AAA domain Roc PF08477.13 BAD85379.1 - 0.026 14.7 0.0 0.24 11.6 0.0 2.3 1 1 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase G-alpha PF00503.20 BAD85379.1 - 0.034 13.3 0.7 0.13 11.4 0.2 2.1 1 1 1 2 2 2 0 G-protein alpha subunit AAA_23 PF13476.6 BAD85379.1 - 0.049 14.1 0.3 0.28 11.7 0.3 2.2 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 BAD85379.1 - 0.053 13.8 0.0 0.18 12.1 0.0 2.1 1 1 0 1 1 1 0 AAA domain KTI12 PF08433.10 BAD85379.1 - 0.069 12.6 0.1 0.56 9.6 0.0 2.2 2 0 0 2 2 2 0 Chromatin associated protein KTI12 MnmE_helical PF12631.7 BAD85379.1 - 0.078 13.1 0.0 0.36 11.0 0.0 1.4 1 1 0 1 1 1 0 MnmE helical domain SRPRB PF09439.10 BAD85379.1 - 0.084 12.3 0.2 0.18 11.2 0.0 1.7 2 0 0 2 2 1 0 Signal recognition particle receptor beta subunit Porin_5 PF16930.5 BAD85379.1 - 0.1 11.1 0.2 0.16 10.5 0.2 1.1 1 0 0 1 1 1 0 Putative porin ABC_tran PF00005.27 BAD85379.1 - 0.18 12.3 0.0 0.56 10.7 0.0 1.9 2 0 0 2 2 2 0 ABC transporter AAA_29 PF13555.6 BAD85379.1 - 0.2 11.5 0.0 0.45 10.3 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Ribosomal_S8e PF01201.22 BAD85380.1 - 5.4e-35 120.5 3.8 6.1e-35 120.4 3.8 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e YlbE PF14003.6 BAD85381.1 - 0.36 11.3 2.0 0.68 10.4 2.0 1.4 1 0 0 1 1 1 0 YlbE-like protein CTP_synth_N PF06418.14 BAD85382.1 - 6.4e-126 419.1 0.1 8.3e-126 418.7 0.1 1.1 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.28 BAD85382.1 - 3.1e-58 196.7 0.0 7.7e-58 195.4 0.0 1.6 2 0 0 2 2 2 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 BAD85382.1 - 1.2e-06 28.5 0.0 1.2e-05 25.2 0.0 2.5 1 1 1 2 2 2 1 Peptidase C26 CbiA PF01656.23 BAD85382.1 - 0.032 14.3 0.0 0.043 13.9 0.0 1.5 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain GATase_3 PF07685.14 BAD85382.1 - 0.067 12.8 0.0 0.13 11.9 0.0 1.5 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain DUF555 PF04475.12 BAD85383.1 - 2.5e-40 136.9 1.2 3.5e-40 136.4 1.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF555) DUF357 PF04010.13 BAD85384.1 - 6.2e-30 103.1 1.6 7.3e-30 102.9 1.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF357) DUF5641 PF18701.1 BAD85386.1 - 0.093 12.9 0.1 0.11 12.7 0.1 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5641) Radical_SAM PF04055.21 BAD85387.1 - 2e-15 57.6 0.0 2.5e-15 57.3 0.0 1.1 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 BAD85387.1 - 1.2e-08 35.3 0.0 2.2e-08 34.4 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 BAD85387.1 - 3.5e-08 33.6 0.0 7.9e-08 32.5 0.0 1.6 1 1 0 1 1 1 1 4Fe-4S single cluster domain TIP49 PF06068.13 BAD85388.1 - 5.8e-141 469.8 2.7 8.2e-141 469.2 2.7 1.2 1 0 0 1 1 1 1 TIP49 P-loop domain TIP49_C PF17856.1 BAD85388.1 - 8.7e-24 83.4 0.1 3.6e-22 78.3 0.1 2.6 2 0 0 2 2 2 1 TIP49 AAA-lid domain AAA PF00004.29 BAD85388.1 - 3.5e-11 43.6 0.1 1.5e-06 28.6 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 BAD85388.1 - 1.5e-08 34.6 0.2 0.00012 21.8 0.1 2.5 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 BAD85388.1 - 5.7e-06 26.8 0.1 5e-05 23.8 0.1 2.2 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 BAD85388.1 - 5.9e-06 26.6 0.0 0.091 13.0 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_5 PF07728.14 BAD85388.1 - 6.7e-05 22.9 0.1 0.0065 16.5 0.0 2.4 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.26 BAD85388.1 - 0.00036 20.3 0.2 0.14 11.8 0.1 2.5 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_19 PF13245.6 BAD85388.1 - 0.00067 20.0 0.2 1 9.7 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_7 PF12775.7 BAD85388.1 - 0.0011 18.5 0.0 0.0057 16.2 0.0 1.9 2 0 0 2 2 2 1 P-loop containing dynein motor region ResIII PF04851.15 BAD85388.1 - 0.0014 18.6 0.0 0.035 14.1 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Mg_chelatase PF01078.21 BAD85388.1 - 0.0015 17.9 1.0 0.057 12.8 0.2 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI DNA_pol3_delta PF06144.13 BAD85388.1 - 0.0035 17.1 0.1 0.015 15.0 0.0 1.9 2 0 0 2 2 2 1 DNA polymerase III, delta subunit AAA_25 PF13481.6 BAD85388.1 - 0.0048 16.5 0.0 0.015 14.9 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 BAD85388.1 - 0.0063 16.7 0.3 0.05 13.8 0.0 2.5 2 2 0 2 2 2 1 AAA domain TsaE PF02367.17 BAD85388.1 - 0.0093 16.0 0.1 0.027 14.5 0.1 1.7 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE ABC_tran PF00005.27 BAD85388.1 - 0.0097 16.4 0.1 0.029 14.9 0.0 1.8 2 0 0 2 2 2 1 ABC transporter Zeta_toxin PF06414.12 BAD85388.1 - 0.01 15.1 0.1 0.026 13.8 0.1 1.7 1 0 0 1 1 1 0 Zeta toxin AAA_23 PF13476.6 BAD85388.1 - 0.012 16.1 4.6 0.075 13.5 4.6 2.1 1 1 0 1 1 1 0 AAA domain T2SSE PF00437.20 BAD85388.1 - 0.022 13.9 1.8 0.23 10.5 0.2 2.4 1 1 1 2 2 2 0 Type II/IV secretion system protein AAA_30 PF13604.6 BAD85388.1 - 0.028 14.2 0.6 8.3 6.1 0.1 2.6 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 BAD85388.1 - 0.031 14.7 0.0 0.06 13.7 0.0 1.5 1 0 0 1 1 1 0 RNA helicase DEAD PF00270.29 BAD85388.1 - 0.033 13.9 0.4 0.25 11.1 0.1 2.3 2 0 0 2 2 2 0 DEAD/DEAH box helicase IstB_IS21 PF01695.17 BAD85388.1 - 0.038 13.7 0.1 0.086 12.6 0.1 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein NACHT PF05729.12 BAD85388.1 - 0.038 13.9 0.1 0.086 12.8 0.1 1.6 1 0 0 1 1 1 0 NACHT domain Bac_DnaA PF00308.18 BAD85388.1 - 0.055 13.3 0.4 0.36 10.6 0.1 2.1 2 0 0 2 2 2 0 Bacterial dnaA protein DnaB_C PF03796.15 BAD85388.1 - 0.056 12.8 0.2 0.16 11.3 0.0 1.8 2 1 0 2 2 2 0 DnaB-like helicase C terminal domain AAA_18 PF13238.6 BAD85388.1 - 0.056 14.0 0.0 0.18 12.3 0.0 2.0 2 0 0 2 2 1 0 AAA domain IPT PF01745.16 BAD85388.1 - 0.1 12.0 0.0 0.28 10.5 0.0 1.7 1 0 0 1 1 1 0 Isopentenyl transferase AAA_29 PF13555.6 BAD85388.1 - 0.29 10.9 0.8 0.64 9.8 0.8 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF4926 PF16277.5 BAD85390.1 - 0.025 13.9 0.0 0.065 12.6 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF4926) PIN_4 PF13638.6 BAD85391.1 - 0.00017 21.9 0.0 0.00027 21.2 0.0 1.3 1 0 0 1 1 1 1 PIN domain DUF1887 PF09002.11 BAD85392.1 - 1e-06 27.7 0.0 1.2e-06 27.4 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1887) Diphthamide_syn PF01866.17 BAD85392.1 - 0.01 15.3 0.0 0.013 14.9 0.0 1.1 1 0 0 1 1 1 0 Putative diphthamide synthesis protein Cas_Cas02710 PF09670.10 BAD85392.1 - 0.017 14.0 0.0 0.021 13.7 0.0 1.0 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Cas02710) IRF-2BP1_2 PF11261.8 BAD85392.1 - 0.041 13.4 0.0 0.097 12.2 0.0 1.6 1 0 0 1 1 1 0 Interferon regulatory factor 2-binding protein zinc finger DUF5616 PF18481.1 BAD85392.1 - 0.065 13.6 0.0 0.099 13.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5616) DUF2284 PF10050.9 BAD85393.1 - 7e-35 120.2 0.2 8.8e-35 119.9 0.2 1.1 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2284) PBP PF01161.20 BAD85394.1 - 3.3e-36 124.5 0.0 4e-36 124.2 0.0 1.1 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein LAB_N PF07578.11 BAD85395.1 - 1.3e-05 25.2 3.7 1.5e-05 25.0 3.7 1.0 1 0 0 1 1 1 1 Lipid A Biosynthesis N-terminal domain PQ-loop PF04193.14 BAD85395.1 - 0.0036 17.1 5.6 0.0053 16.5 2.4 2.1 1 1 1 2 2 2 2 PQ loop repeat P5-ATPase PF12409.8 BAD85395.1 - 0.0091 16.1 1.5 0.01 15.9 1.0 1.3 1 1 0 1 1 1 1 P5-type ATPase cation transporter TPR_19 PF14559.6 BAD85396.1 - 5.4e-06 26.8 1.7 0.024 15.1 0.6 2.8 2 1 1 3 3 3 3 Tetratricopeptide repeat SgrR_N PF12793.7 BAD85396.1 - 0.045 14.0 1.4 4.8 7.4 0.1 2.9 2 1 1 3 3 3 0 Sugar transport-related sRNA regulator N-term TPR_2 PF07719.17 BAD85396.1 - 0.074 13.2 1.5 43 4.6 0.0 3.9 4 0 0 4 4 4 0 Tetratricopeptide repeat ANAPC3 PF12895.7 BAD85396.1 - 0.12 12.6 0.0 4.5 7.6 0.0 2.6 2 1 1 3 3 3 0 Anaphase-promoting complex, cyclosome, subunit 3 TPR_4 PF07721.14 BAD85396.1 - 0.16 12.7 0.3 21 6.1 0.0 3.2 3 0 0 3 3 3 0 Tetratricopeptide repeat Endotoxin_C2 PF18449.1 BAD85396.1 - 0.16 12.3 3.1 0.63 10.4 0.1 2.8 2 2 1 3 3 3 0 Delta endotoxin Glutaredoxin PF00462.24 BAD85397.1 - 1.2e-05 25.4 0.0 4.4e-05 23.6 0.0 1.9 2 0 0 2 2 2 1 Glutaredoxin Thioredoxin_2 PF13098.6 BAD85397.1 - 0.0062 17.0 0.2 0.041 14.3 0.1 2.3 1 1 1 2 2 2 1 Thioredoxin-like domain Thioredoxin PF00085.20 BAD85397.1 - 0.026 14.5 0.0 0.054 13.5 0.0 1.6 1 1 0 1 1 1 0 Thioredoxin Saf_2TM PF18303.1 BAD85397.1 - 0.17 11.5 0.2 0.34 10.5 0.1 1.5 2 0 0 2 2 2 0 SAVED-fused 2TM effector domain HTH_AsnC-type PF13404.6 BAD85399.1 - 5e-18 64.6 2.1 9.1e-18 63.8 2.1 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 BAD85399.1 - 8.8e-18 63.6 0.6 2.9e-17 62.0 0.6 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.21 BAD85399.1 - 3.8e-16 58.8 0.2 9.7e-16 57.5 0.1 1.7 2 0 0 2 2 2 1 Lrp/AsnC ligand binding domain HTH_IclR PF09339.10 BAD85399.1 - 7.6e-07 28.8 0.0 2.1e-06 27.4 0.0 1.7 2 0 0 2 2 1 1 IclR helix-turn-helix domain HTH_20 PF12840.7 BAD85399.1 - 1e-06 28.7 0.1 2.6e-06 27.4 0.1 1.7 2 0 0 2 2 1 1 Helix-turn-helix domain MarR PF01047.22 BAD85399.1 - 1.4e-06 28.1 0.1 9e-06 25.5 0.0 2.1 2 1 0 2 2 2 1 MarR family HTH_23 PF13384.6 BAD85399.1 - 4.3e-06 26.3 0.4 9.6e-06 25.2 0.4 1.5 1 0 0 1 1 1 1 Homeodomain-like domain MarR_2 PF12802.7 BAD85399.1 - 7.7e-06 25.7 0.9 1.5e-05 24.8 0.4 1.8 2 1 0 2 2 2 1 MarR family TrmB PF01978.19 BAD85399.1 - 9.7e-06 25.4 0.1 2.7e-05 23.9 0.0 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Sigma70_r4_2 PF08281.12 BAD85399.1 - 1.7e-05 24.4 0.5 4.6e-05 23.0 0.2 1.9 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 BAD85399.1 - 3.4e-05 23.3 1.1 7.1e-05 22.3 1.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_11 PF08279.12 BAD85399.1 - 3.7e-05 23.6 0.4 0.00037 20.4 0.1 2.4 2 1 0 2 2 2 1 HTH domain HTH_28 PF13518.6 BAD85399.1 - 0.00022 21.3 0.0 0.00039 20.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain CENP-B_N PF04218.13 BAD85399.1 - 0.0003 20.4 0.0 0.00063 19.3 0.0 1.5 1 0 0 1 1 1 1 CENP-B N-terminal DNA-binding domain Penicillinase_R PF03965.16 BAD85399.1 - 0.00041 20.7 0.0 0.00094 19.5 0.0 1.6 2 0 0 2 2 1 1 Penicillinase repressor Fe_dep_repress PF01325.19 BAD85399.1 - 0.00044 20.4 0.1 0.0018 18.4 0.0 1.9 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_38 PF13936.6 BAD85399.1 - 0.00072 19.3 0.6 0.0014 18.4 0.6 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.6 BAD85399.1 - 0.0015 19.0 0.1 0.0032 17.9 0.1 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.20 BAD85399.1 - 0.0018 18.1 0.0 0.0032 17.3 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_DeoR PF08220.12 BAD85399.1 - 0.0019 17.9 1.3 0.0076 16.0 0.1 2.3 3 0 0 3 3 2 1 DeoR-like helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 BAD85399.1 - 0.0029 17.0 0.1 0.0049 16.2 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_47 PF16221.5 BAD85399.1 - 0.0034 16.9 0.1 0.02 14.4 0.0 2.1 2 1 0 2 2 2 1 winged helix-turn-helix HxlR PF01638.17 BAD85399.1 - 0.0055 16.5 0.1 0.015 15.1 0.0 1.7 2 0 0 2 2 1 1 HxlR-like helix-turn-helix FeoC PF09012.10 BAD85399.1 - 0.0061 16.6 0.2 0.012 15.6 0.0 1.6 2 0 0 2 2 1 1 FeoC like transcriptional regulator HTH_36 PF13730.6 BAD85399.1 - 0.011 15.7 0.0 0.022 14.7 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain LexA_DNA_bind PF01726.16 BAD85399.1 - 0.015 15.1 0.1 0.03 14.1 0.1 1.6 1 0 0 1 1 1 0 LexA DNA binding domain HTH_Crp_2 PF13545.6 BAD85399.1 - 0.019 14.9 0.2 0.16 11.9 0.1 2.1 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain Rrf2 PF02082.20 BAD85399.1 - 0.028 14.8 0.0 0.054 13.8 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator EF1_GNE PF00736.19 BAD85399.1 - 0.034 14.3 0.1 0.062 13.5 0.1 1.4 1 0 0 1 1 1 0 EF-1 guanine nucleotide exchange domain ACT_4 PF13291.6 BAD85399.1 - 0.039 14.6 0.1 0.37 11.4 0.1 2.3 1 1 1 2 2 2 0 ACT domain DUF742 PF05331.11 BAD85399.1 - 0.042 13.7 0.0 0.084 12.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF742) PaaX PF07848.12 BAD85399.1 - 0.045 14.0 0.3 0.22 11.8 0.2 2.1 1 1 1 2 2 2 0 PaaX-like protein HTH_29 PF13551.6 BAD85399.1 - 0.094 12.7 0.1 0.2 11.7 0.1 1.6 1 1 0 1 1 1 0 Winged helix-turn helix Methyltransf_33 PF10017.9 BAD85399.1 - 0.11 11.6 0.0 0.12 11.5 0.0 1.1 1 0 0 1 1 1 0 Histidine-specific methyltransferase, SAM-dependent Aminotran_3 PF00202.21 BAD85400.1 - 1e-110 370.2 0.0 1.2e-110 370.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 BAD85400.1 - 0.00019 20.7 0.0 0.0003 20.1 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II Methyltransf_33 PF10017.9 BAD85400.1 - 0.0099 15.1 0.0 0.018 14.2 0.0 1.3 1 0 0 1 1 1 1 Histidine-specific methyltransferase, SAM-dependent Xan_ur_permease PF00860.20 BAD85401.1 - 5.4e-96 321.6 45.0 6.4e-96 321.4 45.0 1.1 1 0 0 1 1 1 1 Permease family DUF996 PF06195.13 BAD85402.1 - 6.8e-30 104.1 23.2 6.8e-30 104.1 23.2 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF996) MIG-14_Wnt-bd PF06664.12 BAD85402.1 - 0.00034 19.9 7.9 0.00045 19.5 7.9 1.1 1 0 0 1 1 1 1 Wnt-binding factor required for Wnt secretion Nitroreductase PF00881.24 BAD85402.1 - 0.045 13.8 0.0 0.069 13.2 0.0 1.2 1 0 0 1 1 1 0 Nitroreductase family DUF898 PF05987.13 BAD85402.1 - 0.12 11.4 15.7 0.021 13.9 11.8 1.6 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF898) FAM176 PF14851.6 BAD85402.1 - 0.13 11.9 11.6 0.37 10.4 1.9 2.9 2 1 1 3 3 3 0 FAM176 family DHHC PF01529.20 BAD85402.1 - 0.58 10.3 17.2 1.7 8.7 6.4 2.1 1 1 1 2 2 2 0 DHHC palmitoyltransferase Jiraiya PF15038.6 BAD85402.1 - 0.65 9.4 12.2 0.23 10.9 7.3 2.1 2 0 0 2 2 2 0 Jiraiya Anoctamin PF04547.12 BAD85402.1 - 0.89 8.3 11.1 0.83 8.4 9.5 1.7 1 1 1 2 2 2 0 Calcium-activated chloride channel PglL_A PF15864.5 BAD85402.1 - 1.5 8.7 0.1 1.5 8.7 0.1 3.7 4 0 0 4 4 4 0 Protein glycosylation ligase DUF2975 PF11188.8 BAD85402.1 - 1.7 8.5 24.0 0.81 9.6 13.7 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2975) DUF373 PF04123.13 BAD85402.1 - 2.2 7.6 21.8 2.1 7.7 8.7 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF373) DUF3341 PF11821.8 BAD85402.1 - 3.1 7.4 11.3 0.26 10.9 1.1 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF3341) AC_N PF16214.5 BAD85402.1 - 3.3 6.8 6.5 4.2 6.4 6.5 1.3 1 0 0 1 1 1 0 Adenylyl cyclase N-terminal extracellular and transmembrane region DUF2157 PF09925.9 BAD85402.1 - 3.4 7.4 18.5 0.42 10.4 11.2 2.3 1 1 1 2 2 2 0 Predicted membrane protein (DUF2157) DUF4013 PF13197.6 BAD85402.1 - 4.1 7.2 28.4 0.11 12.3 19.7 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF4013) Fer4 PF00037.27 BAD85403.1 - 3.6e-14 51.9 10.4 9.8e-08 31.5 2.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 BAD85403.1 - 4.1e-11 43.3 10.1 4.1e-11 43.3 10.1 1.7 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 BAD85403.1 - 1.5e-09 37.8 4.2 5.9e-05 23.1 0.2 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 BAD85403.1 - 6.1e-09 36.7 1.9 0.0014 19.5 0.0 2.6 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 BAD85403.1 - 2.7e-07 30.6 18.2 9.4e-06 25.7 10.0 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 BAD85403.1 - 3.9e-07 30.1 8.2 1.6e-06 28.1 8.7 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 BAD85403.1 - 7.7e-06 26.4 1.6 0.1 13.1 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 BAD85403.1 - 2.3e-05 24.2 13.1 0.01 15.9 4.4 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 BAD85403.1 - 9e-05 22.4 12.9 0.0024 17.9 1.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 BAD85403.1 - 9.8e-05 22.5 4.5 0.018 15.2 0.5 2.5 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 BAD85403.1 - 0.0031 17.9 10.1 0.012 16.0 10.1 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.6 BAD85403.1 - 0.0074 17.0 7.7 0.83 10.4 1.0 2.4 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_3 PF12798.7 BAD85403.1 - 0.012 16.4 17.8 0.021 15.8 4.5 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.7 BAD85403.1 - 0.018 15.5 13.4 0.31 11.7 3.6 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_22 PF17179.4 BAD85403.1 - 0.024 15.5 5.3 0.38 11.6 0.4 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 BAD85403.1 - 0.057 14.0 9.0 1.1 9.8 1.3 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Complex1_49kDa PF00346.19 BAD85404.1 - 5e-75 252.1 0.0 4e-73 245.9 0.0 2.3 2 1 0 2 2 2 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit DUF4930 PF16284.5 BAD85404.1 - 0.15 12.0 0.0 0.31 11.0 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4930) Complex1_30kDa PF00329.19 BAD85405.1 - 1.5e-31 109.6 0.2 1.8e-31 109.3 0.2 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Oxidored_q6 PF01058.22 BAD85406.1 - 2.1e-19 69.6 0.0 3.2e-19 69.0 0.0 1.3 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit NADHdh PF00146.21 BAD85407.1 - 4.4e-62 210.1 20.7 5.1e-62 209.9 20.7 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Proton_antipo_M PF00361.20 BAD85408.1 - 3.3e-53 180.8 29.8 7.4e-53 179.6 29.8 1.6 1 0 0 1 1 1 1 Proton-conducting membrane transporter SLATT_fungal PF18142.1 BAD85408.1 - 0.0098 15.9 1.3 0.048 13.6 1.3 2.2 1 0 0 1 1 1 1 SMODS and SLOG-associating 2TM effector domain DUF3285 PF11688.8 BAD85408.1 - 0.099 12.6 0.3 0.099 12.6 0.3 3.8 5 0 0 5 5 5 0 Protein of unknown function (DUF3285) DUF3464 PF11947.8 BAD85408.1 - 3.5 7.4 6.4 0.79 9.5 2.1 2.2 2 0 0 2 2 2 0 Photosynthesis affected mutant 68 Proton_antipo_M PF00361.20 BAD85409.1 - 6.7e-64 215.9 24.2 6.7e-64 215.9 24.2 2.5 2 1 1 3 3 3 1 Proton-conducting membrane transporter NADHdeh_related PF10125.9 BAD85409.1 - 4.2e-07 29.6 13.6 4.2e-07 29.6 13.6 2.3 2 0 0 2 2 2 1 NADH dehydrogenase I, subunit N related protein DUF4605 PF15378.6 BAD85409.1 - 0.043 13.7 0.5 0.043 13.7 0.5 4.6 5 2 0 5 5 5 0 Domain of unknown function (DUF4605) PIRT PF15099.6 BAD85409.1 - 0.41 10.2 5.5 0.11 12.0 0.3 2.8 2 1 0 2 2 2 0 Phosphoinositide-interacting protein family Oxidored_q2 PF00420.24 BAD85410.1 - 4.1e-33 113.1 4.7 5e-33 112.9 4.7 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF2108 PF09881.9 BAD85410.1 - 0.00067 19.6 4.3 0.00067 19.6 4.3 1.8 2 0 0 2 2 2 1 Predicted membrane protein (DUF2108) MnhB PF04039.13 BAD85411.1 - 4.6e-24 85.1 13.1 4.6e-24 85.1 13.1 2.3 2 1 1 3 3 3 1 Domain related to MnhB subunit of Na+/H+ antiporter PAP2 PF01569.21 BAD85411.1 - 0.0094 15.7 6.2 0.097 12.4 6.1 2.2 1 1 0 1 1 1 1 PAP2 superfamily DUF2105 PF09878.9 BAD85411.1 - 0.14 11.9 6.5 0.25 11.0 6.4 1.6 1 1 0 1 1 1 0 Predicted membrane protein (DUF2105) Spec3 PF15795.5 BAD85411.1 - 1.1 9.8 6.7 0.35 11.4 1.9 2.6 2 0 0 2 2 2 0 Ectodermal ciliogenesis protein DUF4040 PF13244.6 BAD85412.1 - 3.2e-18 65.6 10.5 3.9e-18 65.4 10.5 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4040) TspO_MBR PF03073.15 BAD85412.1 - 0.005 16.9 5.4 0.0064 16.5 5.4 1.1 1 0 0 1 1 1 1 TspO/MBR family DUF1129 PF06570.11 BAD85412.1 - 0.069 12.6 0.5 0.12 11.8 0.0 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1129) Phage_r1t_holin PF16945.5 BAD85412.1 - 0.16 12.1 5.3 0.093 12.9 3.5 1.6 1 1 0 1 1 1 0 Putative lactococcus lactis phage r1t holin DUF2721 PF11026.8 BAD85412.1 - 0.2 11.6 8.1 0.076 12.9 5.6 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2721) Phage_holin_5_2 PF16079.5 BAD85412.1 - 5.8 7.3 10.0 13 6.2 2.2 2.1 1 1 1 2 2 2 0 Phage holin family Hol44, in holin superfamily V PhaG_MnhG_YufB PF03334.14 BAD85413.1 - 2.3e-25 88.6 5.0 2.9e-25 88.3 5.0 1.1 1 0 0 1 1 1 1 Na+/H+ antiporter subunit MrpF_PhaF PF04066.13 BAD85414.1 - 5.7e-19 68.3 8.2 5.7e-19 68.3 8.2 2.0 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) IncD PF17628.2 BAD85414.1 - 0.042 13.6 3.0 0.055 13.2 3.0 1.4 1 1 0 1 1 1 0 Inclusion membrane protein D MNHE PF01899.16 BAD85415.1 - 2e-46 157.3 1.1 2.4e-46 157.1 1.1 1.1 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit ACT PF01842.25 BAD85416.1 - 4.2e-07 29.6 0.1 6.9e-07 28.9 0.1 1.3 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.6 BAD85416.1 - 0.017 15.7 0.4 0.062 13.9 0.4 1.9 1 1 0 1 1 1 0 ACT domain ACT_7 PF13840.6 BAD85416.1 - 0.022 14.5 0.0 0.039 13.8 0.0 1.4 1 0 0 1 1 1 0 ACT domain HU-CCDC81_euk_2 PF18289.1 BAD85416.1 - 0.12 12.6 0.0 0.23 11.6 0.0 1.5 1 0 0 1 1 1 0 CCDC81 eukaryotic HU domain 2 Radical_SAM PF04055.21 BAD85417.1 - 1.1e-27 97.5 0.0 3.2e-27 96.0 0.0 1.8 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 BAD85417.1 - 0.00026 21.1 0.0 0.00062 19.9 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF5010 PF16402.5 BAD85417.1 - 0.068 12.0 0.0 0.11 11.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5010) TRAM PF01938.20 BAD85417.1 - 0.11 12.5 0.7 0.26 11.3 0.7 1.7 1 0 0 1 1 1 0 TRAM domain Epimerase_2 PF02350.19 BAD85419.1 - 7.9e-119 396.6 0.0 9.6e-119 396.3 0.0 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase Glyco_transf_4 PF13439.6 BAD85419.1 - 0.029 14.4 0.0 0.048 13.7 0.0 1.4 1 0 0 1 1 1 0 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.6 BAD85419.1 - 0.037 14.1 0.0 0.06 13.4 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase 4-like UDPG_MGDP_dh_N PF03721.14 BAD85420.1 - 6.6e-53 179.1 0.1 1.2e-52 178.3 0.1 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh_C PF03720.15 BAD85420.1 - 7.3e-26 90.6 0.2 2.8e-24 85.5 0.1 2.7 2 1 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain UDPG_MGDP_dh PF00984.19 BAD85420.1 - 1.2e-24 86.3 0.0 5.1e-24 84.3 0.0 2.0 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain NAD_binding_2 PF03446.15 BAD85420.1 - 1.6e-07 31.6 0.0 5.7e-07 29.8 0.0 1.9 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.18 BAD85420.1 - 3.1e-05 23.9 0.0 7e-05 22.8 0.0 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 BAD85420.1 - 5.5e-05 23.2 0.0 0.0041 17.1 0.0 2.5 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.19 BAD85420.1 - 0.0014 18.0 0.0 0.018 14.4 0.0 2.3 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 BAD85420.1 - 0.0036 16.6 0.0 0.0067 15.8 0.0 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox PF00070.27 BAD85420.1 - 0.01 16.4 0.2 0.058 14.0 0.1 2.3 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 BAD85420.1 - 0.017 14.4 0.0 0.032 13.5 0.0 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase F420_oxidored PF03807.17 BAD85420.1 - 0.05 14.2 0.2 26 5.5 0.2 2.9 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.16 BAD85420.1 - 0.087 12.5 0.0 0.23 11.1 0.0 1.7 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA DUF354 PF04007.12 BAD85421.1 - 1.1e-97 327.1 0.0 1.4e-97 326.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF354) Epimerase_2 PF02350.19 BAD85421.1 - 0.021 13.7 0.0 0.033 13.1 0.0 1.2 1 0 0 1 1 1 0 UDP-N-acetylglucosamine 2-epimerase Glyco_transf_4 PF13439.6 BAD85421.1 - 0.082 12.9 0.0 0.18 11.8 0.0 1.6 1 0 0 1 1 1 0 Glycosyltransferase Family 4 LpxB PF02684.15 BAD85421.1 - 0.19 10.5 0.0 0.53 9.1 0.0 1.7 2 0 0 2 2 2 0 Lipid-A-disaccharide synthetase SpoIIM PF01944.17 BAD85422.1 - 2e-34 118.9 13.4 2.5e-34 118.6 13.4 1.0 1 0 0 1 1 1 1 Stage II sporulation protein M DUF1129 PF06570.11 BAD85422.1 - 0.47 9.9 2.8 0.68 9.4 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1129) Lip_prot_lig_C PF10437.9 BAD85423.1 - 3.7e-07 30.0 0.2 4.8e-07 29.7 0.2 1.2 1 1 0 1 1 1 1 Bacterial lipoate protein ligase C-terminus DUF3769 PF12600.8 BAD85423.1 - 0.12 11.3 0.0 0.13 11.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3769) tRNA-synt_1d PF00750.19 BAD85424.1 - 1.2e-39 136.2 1.2 2.6e-26 92.4 0.7 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (R) DALR_1 PF05746.15 BAD85424.1 - 1.4e-37 128.5 0.1 1.4e-37 128.5 0.1 2.8 3 0 0 3 3 3 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.16 BAD85424.1 - 1.6e-13 51.1 0.1 7.7e-13 48.8 0.0 2.3 3 0 0 3 3 1 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1e PF01406.19 BAD85424.1 - 0.00016 21.1 0.0 0.00031 20.2 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1 PF00133.22 BAD85424.1 - 0.0037 15.6 0.0 0.0075 14.6 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Death PF00531.22 BAD85424.1 - 0.046 13.9 0.6 7.3 6.8 0.0 3.2 4 0 0 4 4 4 0 Death domain AAR2 PF05282.11 BAD85424.1 - 0.071 12.5 0.0 0.13 11.6 0.0 1.4 1 0 0 1 1 1 0 AAR2 protein PKcGMP_CC PF16808.5 BAD85424.1 - 0.12 12.2 1.0 0.57 10.1 1.0 2.2 1 0 0 1 1 1 0 Coiled-coil N-terminus of cGMP-dependent protein kinase RecX PF02631.16 BAD85424.1 - 0.15 12.5 0.9 0.33 11.4 0.1 2.0 2 0 0 2 2 2 0 RecX family tRNA-synt_1g PF09334.11 BAD85424.1 - 0.18 10.5 0.0 0.43 9.3 0.0 1.6 2 0 0 2 2 2 0 tRNA synthetases class I (M) Spc42p PF11544.8 BAD85424.1 - 0.49 10.4 2.5 3.8 7.6 0.8 2.8 2 1 0 2 2 2 0 Spindle pole body component Spc42p ATPase_2 PF01637.18 BAD85425.1 - 3.6e-23 82.7 0.0 7.9e-23 81.6 0.0 1.6 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 BAD85425.1 - 2.4e-09 37.3 0.0 0.0011 19.0 0.0 2.7 1 1 0 2 2 2 2 AAA domain AAA_22 PF13401.6 BAD85425.1 - 6.1e-05 23.3 0.0 0.00012 22.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 BAD85425.1 - 0.00036 21.0 0.0 0.001 19.5 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain TrmB PF01978.19 BAD85425.1 - 0.14 12.1 0.0 0.45 10.4 0.0 1.9 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DHDPS PF00701.22 BAD85426.1 - 5.1e-60 202.6 0.0 5.7e-60 202.5 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family DHquinase_I PF01487.15 BAD85426.1 - 0.14 12.4 0.0 0.2 11.9 0.0 1.2 1 0 0 1 1 1 0 Type I 3-dehydroquinase Not3 PF04065.15 BAD85427.1 - 0.0011 18.4 2.0 0.0011 18.4 2.0 1.0 1 0 0 1 1 1 1 Not1 N-terminal domain, CCR4-Not complex component eRF1_2 PF03464.15 BAD85428.1 - 4e-50 169.6 0.0 6.9e-50 168.8 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.15 BAD85428.1 - 3.1e-36 124.3 0.5 9.3e-36 122.8 0.5 1.9 1 0 0 1 1 1 1 eRF1 domain 3 baeRF_family10 PF18854.1 BAD85428.1 - 2.5e-16 60.2 0.2 6.7e-16 58.8 0.0 1.9 2 1 0 2 2 2 1 Bacterial archaeo-eukaryotic release factor family 10 acVLRF1 PF18859.1 BAD85428.1 - 3.6e-14 53.2 0.0 8.5e-14 52.0 0.0 1.6 1 1 0 1 1 1 1 Actinobacteria/chloroflexi VLRF1 release factor eRF1_1 PF03463.15 BAD85428.1 - 1.6e-09 37.8 0.0 2.6e-09 37.2 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 1 HypA PF01155.19 BAD85428.1 - 0.001 19.0 0.1 0.0021 18.0 0.1 1.6 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA baeRF_family12 PF18856.1 BAD85428.1 - 0.003 18.2 0.0 0.0075 16.9 0.0 1.7 1 0 0 1 1 1 1 Bacterial archaeo-eukaryotic release factor family 12 Zn-ribbon_8 PF09723.10 BAD85428.1 - 0.0038 17.3 2.1 0.0054 16.8 0.8 1.9 2 0 0 2 2 2 1 Zinc ribbon domain zf-ribbon_3 PF13248.6 BAD85428.1 - 0.0049 16.2 2.1 0.28 10.6 0.1 2.4 2 0 0 2 2 2 1 zinc-ribbon domain Lar_restr_allev PF14354.6 BAD85428.1 - 0.022 15.1 0.0 0.26 11.7 0.0 2.3 2 0 0 2 2 2 0 Restriction alleviation protein Lar TetR_C_26 PF17934.1 BAD85428.1 - 0.12 12.7 0.0 0.33 11.3 0.0 1.7 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain DZR PF12773.7 BAD85428.1 - 0.14 12.2 0.4 0.26 11.4 0.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon FMN_red PF03358.15 BAD85428.1 - 0.18 11.6 0.0 15 5.3 0.0 2.4 2 0 0 2 2 2 0 NADPH-dependent FMN reductase Rubredoxin_2 PF18073.1 BAD85428.1 - 0.64 9.8 2.6 6.7 6.5 0.1 2.5 2 0 0 2 2 2 0 Rubredoxin metal binding domain zinc_ribbon_2 PF13240.6 BAD85428.1 - 9 6.2 7.9 5.2 6.9 0.7 2.3 2 0 0 2 2 2 0 zinc-ribbon domain BofA PF07441.11 BAD85429.1 - 2.2e-07 31.0 27.1 2.8e-07 30.6 27.1 1.1 1 0 0 1 1 1 1 SigmaK-factor processing regulatory protein BofA Adaptin_N PF01602.20 BAD85430.1 - 2.5e-07 29.6 0.0 9.6e-06 24.4 0.0 2.0 1 1 1 2 2 2 2 Adaptin N terminal region HEAT_2 PF13646.6 BAD85430.1 - 0.00017 21.9 0.0 3.1 8.3 0.0 3.2 2 1 1 3 3 3 1 HEAT repeats Cnd1 PF12717.7 BAD85430.1 - 0.0035 17.4 0.1 0.27 11.3 0.0 2.2 1 1 1 2 2 2 1 non-SMC mitotic condensation complex subunit 1 V-ATPase_H_C PF11698.8 BAD85430.1 - 0.0065 16.6 0.0 0.073 13.2 0.0 2.3 1 1 0 1 1 1 1 V-ATPase subunit H RIX1 PF08167.12 BAD85430.1 - 0.037 13.8 0.0 0.24 11.1 0.0 2.0 1 1 0 1 1 1 0 rRNA processing/ribosome biogenesis HEAT_EZ PF13513.6 BAD85430.1 - 0.045 14.3 0.0 0.38 11.3 0.0 2.3 2 0 0 2 2 2 0 HEAT-like repeat B56 PF01603.20 BAD85430.1 - 0.093 11.7 0.0 0.096 11.6 0.0 1.2 1 0 0 1 1 1 0 Protein phosphatase 2A regulatory B subunit (B56 family) Arm PF00514.23 BAD85430.1 - 0.11 12.6 0.0 0.67 10.1 0.1 2.3 2 1 0 2 2 2 0 Armadillo/beta-catenin-like repeat PemK_toxin PF02452.17 BAD85431.1 - 9.4e-17 61.4 0.0 1.3e-16 61.0 0.0 1.2 1 0 0 1 1 1 1 PemK-like, MazF-like toxin of type II toxin-antitoxin system GlutR_dimer PF00745.20 BAD85432.1 - 0.054 13.9 5.2 2.2 8.8 0.1 2.7 2 1 1 3 3 3 0 Glutamyl-tRNAGlu reductase, dimerisation domain Class_IIIsignal PF04021.12 BAD85433.1 - 0.081 12.9 1.7 0.2 11.7 1.7 1.7 1 1 0 1 1 1 0 Class III signal peptide Class_IIIsignal PF04021.12 BAD85434.1 - 1.2e-08 34.7 3.1 1.8e-08 34.1 3.1 1.3 1 0 0 1 1 1 1 Class III signal peptide HTH_11 PF08279.12 BAD85435.1 - 0.00029 20.7 0.1 0.0011 18.9 0.0 2.0 2 0 0 2 2 2 1 HTH domain HTH_22 PF13309.6 BAD85435.1 - 0.03 14.4 0.1 0.39 10.8 0.1 2.4 1 1 0 1 1 1 0 HTH domain HTH_28 PF13518.6 BAD85435.1 - 0.032 14.4 0.0 0.06 13.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.6 BAD85435.1 - 0.059 13.4 0.0 0.14 12.2 0.0 1.7 1 1 0 1 1 1 0 Winged helix-turn helix HTH_23 PF13384.6 BAD85435.1 - 0.069 13.0 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HTH_8 PF02954.19 BAD85435.1 - 0.072 12.9 0.0 1 9.2 0.0 2.8 2 1 0 2 2 2 0 Bacterial regulatory protein, Fis family HTH_17 PF12728.7 BAD85435.1 - 0.1 12.8 0.0 0.2 11.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain DUF3990 PF13151.6 BAD85435.1 - 0.11 12.2 0.0 0.2 11.3 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3990) Mga PF05043.13 BAD85435.1 - 0.13 12.8 0.3 0.32 11.6 0.1 1.8 2 0 0 2 2 2 0 Mga helix-turn-helix domain MerR PF00376.23 BAD85435.1 - 0.15 11.9 0.0 0.29 10.9 0.0 1.5 1 0 0 1 1 1 0 MerR family regulatory protein MarR_2 PF12802.7 BAD85435.1 - 0.17 11.8 0.0 0.32 10.9 0.0 1.4 1 0 0 1 1 1 0 MarR family Peptidase_M50 PF02163.22 BAD85436.1 - 7.1e-13 48.4 10.5 2.5e-08 33.5 0.3 2.4 1 1 0 2 2 2 2 Peptidase family M50 Zn-ribbon_8 PF09723.10 BAD85436.1 - 0.00026 21.0 1.1 0.00048 20.2 1.1 1.4 1 0 0 1 1 1 1 Zinc ribbon domain TFIIS_C PF01096.18 BAD85436.1 - 0.13 12.2 0.6 4 7.4 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DUF2072 PF09845.9 BAD85436.1 - 0.14 12.5 0.1 0.22 11.8 0.1 1.2 1 0 0 1 1 1 0 Zn-ribbon containing protein zf-C4_Topoisom PF01396.19 BAD85436.1 - 0.16 11.8 0.2 0.3 10.9 0.2 1.4 1 0 0 1 1 1 0 Topoisomerase DNA binding C4 zinc finger DUF1451 PF07295.11 BAD85436.1 - 0.23 11.5 0.6 0.34 10.9 0.6 1.2 1 0 0 1 1 1 0 Zinc-ribbon containing domain DNA_RNApol_7kD PF03604.13 BAD85436.1 - 0.25 11.0 2.3 0.46 10.2 2.3 1.4 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit DUF1272 PF06906.11 BAD85436.1 - 0.26 11.4 0.5 0.5 10.5 0.5 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) TF_Zn_Ribbon PF08271.12 BAD85436.1 - 0.29 10.7 2.0 1.5 8.4 2.0 2.0 1 1 0 1 1 1 0 TFIIB zinc-binding zf-ribbon_3 PF13248.6 BAD85436.1 - 0.75 9.3 5.5 5.8 6.5 5.5 2.1 1 1 0 1 1 1 0 zinc-ribbon domain DUF126 PF01989.16 BAD85437.1 - 2.7e-36 123.2 0.4 5.1e-36 122.3 0.4 1.5 1 0 0 1 1 1 1 Aconitase X swivel domain Prot_ATP_ID_OB PF16450.5 BAD85437.1 - 0.077 13.0 1.0 0.83 9.7 0.5 2.6 3 1 0 3 3 3 0 Proteasomal ATPase OB C-terminal domain DUF521 PF04412.13 BAD85438.1 - 7.6e-150 499.1 0.0 8.7e-150 498.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF521) LAGLIDADG_3 PF14528.6 BAD85439.1 - 2.7e-20 72.5 0.4 5.2e-13 49.1 0.2 2.3 2 0 0 2 2 2 2 LAGLIDADG-like domain LAGLIDADG_WhiA PF14527.6 BAD85439.1 - 0.00027 20.9 1.6 0.0043 17.1 0.0 3.0 3 1 0 3 3 3 1 WhiA LAGLIDADG-like domain Ribosomal_S13_N PF08069.12 BAD85440.1 - 6.1e-28 96.6 0.1 1.3e-27 95.6 0.1 1.6 2 0 0 2 2 2 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.22 BAD85440.1 - 7.1e-21 74.2 0.6 9.8e-21 73.8 0.6 1.2 1 0 0 1 1 1 1 Ribosomal protein S15 DUF5340 PF17275.2 BAD85440.1 - 0.071 13.2 0.0 3.1 8.0 0.0 2.4 2 1 0 2 2 2 0 Family of unknown function (DUF5340) DHHA1 PF02272.19 BAD85441.1 - 7.2e-23 81.5 4.1 1.1e-22 81.0 2.5 2.2 2 0 0 2 2 2 1 DHHA1 domain DHH PF01368.20 BAD85441.1 - 0.0077 16.5 0.0 0.016 15.4 0.0 1.5 1 0 0 1 1 1 1 DHH family Lipase_GDSL_3 PF14606.6 BAD85441.1 - 0.041 14.0 0.0 1.9 8.6 0.0 2.2 2 0 0 2 2 2 0 GDSL-like Lipase/Acylhydrolase family Pcc1 PF09341.10 BAD85442.1 - 0.00058 19.9 0.0 0.00063 19.8 0.0 1.2 1 0 0 1 1 1 1 Transcription factor Pcc1 Ribosomal_S3Ae PF01015.18 BAD85443.1 - 1.7e-68 230.2 2.3 2e-68 230.0 2.3 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family RHH_3 PF12651.7 BAD85444.1 - 0.0042 17.0 0.8 0.0062 16.5 0.8 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix domain MinE PF03776.14 BAD85444.1 - 0.051 13.6 1.1 0.076 13.0 1.0 1.4 1 1 0 1 1 1 0 Septum formation topological specificity factor MinE DUF4287 PF14117.6 BAD85444.1 - 0.11 12.6 0.0 0.17 12.0 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4287) PIN PF01850.21 BAD85445.1 - 4.3e-18 66.0 0.1 4.8e-18 65.8 0.1 1.0 1 0 0 1 1 1 1 PIN domain PIN_12 PF16289.5 BAD85445.1 - 0.0066 17.0 0.0 0.0082 16.6 0.0 1.2 1 0 0 1 1 1 1 PIN domain SPOUT_MTase_2 PF14419.6 BAD85446.1 - 4.6e-84 280.0 0.4 6.7e-84 279.5 0.1 1.4 2 0 0 2 2 2 1 AF2226-like SPOUT RNA Methylase fused to THUMP THUMP PF02926.17 BAD85446.1 - 9.3e-30 103.6 4.2 1.3e-29 103.1 1.3 2.4 3 0 0 3 3 3 1 THUMP domain Methyltrn_RNA_4 PF09936.9 BAD85446.1 - 0.00095 19.1 0.1 0.0087 15.9 0.0 2.0 2 0 0 2 2 2 1 SAM-dependent RNA methyltransferase Lyase_1 PF00206.20 BAD85446.1 - 0.0056 16.1 0.2 0.0089 15.5 0.2 1.2 1 0 0 1 1 1 1 Lyase SPOUT_MTase PF02590.17 BAD85446.1 - 0.13 12.2 0.0 0.92 9.5 0.0 2.1 2 0 0 2 2 2 0 Predicted SPOUT methyltransferase DUF92 PF01940.16 BAD85447.1 - 9.1e-54 182.4 13.2 9.1e-54 182.4 13.2 1.4 1 1 0 1 1 1 1 Integral membrane protein DUF92 Glug PF07581.12 BAD85447.1 - 0.087 13.3 2.9 3.6 8.2 0.1 2.9 2 0 0 2 2 2 0 The GLUG motif DUF1453 PF07301.11 BAD85447.1 - 0.15 12.1 1.9 0.16 12.0 0.3 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1453) HTH_24 PF13412.6 BAD85448.1 - 7.4e-16 57.4 1.7 2e-15 56.1 1.2 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 BAD85448.1 - 9.1e-13 47.8 1.0 1.7e-12 46.9 1.0 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_Crp_2 PF13545.6 BAD85448.1 - 1.9e-09 37.4 0.1 4.4e-09 36.2 0.1 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_20 PF12840.7 BAD85448.1 - 1.3e-08 34.7 0.1 3.2e-08 33.5 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 BAD85448.1 - 2.4e-07 30.5 0.1 6.9e-07 29.1 0.0 1.8 3 0 0 3 3 1 1 MarR family HTH_28 PF13518.6 BAD85448.1 - 1.9e-06 27.9 0.7 1.1e-05 25.5 0.1 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain MarR PF01047.22 BAD85448.1 - 2.6e-06 27.3 0.4 5.1e-06 26.3 0.4 1.5 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 BAD85448.1 - 1.2e-05 25.1 1.2 3.3e-05 23.7 1.2 1.7 1 0 0 1 1 1 1 HTH domain Crp PF00325.20 BAD85448.1 - 1.2e-05 24.8 0.9 2.2e-05 24.0 0.9 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, crp family AsnC_trans_reg PF01037.21 BAD85448.1 - 2.6e-05 24.1 0.0 4.4e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain Sigma70_r4 PF04545.16 BAD85448.1 - 5.8e-05 22.5 0.1 0.00016 21.1 0.1 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_5 PF01022.20 BAD85448.1 - 0.00011 22.0 0.4 0.00025 20.8 0.2 1.7 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_23 PF13384.6 BAD85448.1 - 0.00017 21.3 1.4 0.00028 20.6 0.3 1.9 2 0 0 2 2 2 1 Homeodomain-like domain TrmB PF01978.19 BAD85448.1 - 0.0003 20.6 0.5 0.002 18.0 0.2 2.2 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.6 BAD85448.1 - 0.00038 20.6 0.3 0.00096 19.3 0.2 1.7 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_Mga PF08280.11 BAD85448.1 - 0.00072 19.5 0.1 0.0015 18.5 0.1 1.5 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_3 PF01381.22 BAD85448.1 - 0.0014 18.6 0.3 0.0031 17.5 0.3 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_DeoR PF08220.12 BAD85448.1 - 0.0021 17.8 1.8 0.0033 17.1 0.8 1.8 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain Rrf2 PF02082.20 BAD85448.1 - 0.0082 16.5 0.3 0.038 14.3 0.1 2.0 2 0 0 2 2 2 1 Transcriptional regulator HTH_36 PF13730.6 BAD85448.1 - 0.022 14.7 0.2 0.048 13.6 0.2 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Replic_Relax PF13814.6 BAD85448.1 - 0.027 14.6 0.5 0.032 14.3 0.5 1.3 1 1 0 1 1 1 0 Replication-relaxation HxlR PF01638.17 BAD85448.1 - 0.029 14.2 2.5 0.85 9.5 0.4 2.6 1 1 2 3 3 3 0 HxlR-like helix-turn-helix GntR PF00392.21 BAD85448.1 - 0.031 13.9 2.1 0.081 12.6 0.5 2.0 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family Sigma70_r4_2 PF08281.12 BAD85448.1 - 0.031 13.9 0.1 0.24 11.1 0.1 2.1 2 0 0 2 2 2 0 Sigma-70, region 4 DUF4878 PF12870.7 BAD85448.1 - 0.036 14.4 0.0 0.048 14.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4878) HTH_19 PF12844.7 BAD85448.1 - 0.04 13.9 1.6 0.09 12.8 1.4 1.7 2 0 0 2 2 1 0 Helix-turn-helix domain HTH_CodY PF08222.11 BAD85448.1 - 0.042 13.4 0.1 0.67 9.6 0.0 2.2 2 0 0 2 2 2 0 CodY helix-turn-helix domain HTH_IclR PF09339.10 BAD85448.1 - 0.052 13.4 0.6 0.11 12.3 0.6 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_31 PF13560.6 BAD85448.1 - 0.066 13.6 0.2 0.11 12.9 0.2 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Phage_rep_O PF04492.13 BAD85448.1 - 0.08 13.5 0.0 0.17 12.5 0.0 1.5 1 0 0 1 1 1 0 Bacteriophage replication protein O TFIIE_alpha PF02002.17 BAD85448.1 - 0.093 12.6 0.7 0.32 10.9 0.4 2.0 1 1 1 2 2 2 0 TFIIE alpha subunit HTH_WhiA PF02650.14 BAD85448.1 - 0.3 11.5 2.3 0.28 11.6 0.4 1.9 3 0 0 3 3 1 0 WhiA C-terminal HTH domain MazG PF03819.17 BAD85449.1 - 2.7e-14 53.1 0.0 3.9e-14 52.6 0.0 1.2 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain dUTPase_2 PF08761.11 BAD85449.1 - 0.00039 20.6 0.0 0.00046 20.4 0.0 1.1 1 0 0 1 1 1 1 dUTPase PRA-PH PF01503.17 BAD85449.1 - 0.00067 20.0 0.1 0.00084 19.7 0.1 1.3 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG-like PF12643.7 BAD85449.1 - 0.0011 19.2 0.1 0.0017 18.6 0.1 1.3 1 0 0 1 1 1 1 MazG-like family HTH_5 PF01022.20 BAD85450.1 - 6.4e-11 42.0 0.4 2.4e-10 40.1 0.4 1.9 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 BAD85450.1 - 3.6e-08 33.3 0.2 6.4e-08 32.5 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain ArsR PF09824.9 BAD85450.1 - 0.082 12.5 0.1 0.15 11.6 0.1 1.4 1 0 0 1 1 1 0 ArsR transcriptional regulator Prok-JAB PF14464.6 BAD85451.1 - 2.6e-11 43.3 0.0 3.1e-11 43.1 0.0 1.1 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain DUF2666 PF10869.8 BAD85452.1 - 3e-63 212.0 1.0 2.1e-48 163.9 0.1 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF2666) Lon_C PF05362.13 BAD85453.1 - 2.1e-37 128.7 2.7 3.5e-37 128.0 2.7 1.4 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA_32 PF13654.6 BAD85453.1 - 4.5e-29 101.6 0.0 1.2e-22 80.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 BAD85453.1 - 3.9e-18 65.6 0.1 2e-09 37.1 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 BAD85453.1 - 2.3e-16 60.0 0.0 1.6e-09 37.7 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_5 PF07728.14 BAD85453.1 - 2.3e-11 43.9 0.0 0.00026 21.0 0.0 2.8 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) ChlI PF13541.6 BAD85453.1 - 5.7e-11 42.3 0.8 1.3e-10 41.2 0.8 1.6 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase AAA PF00004.29 BAD85453.1 - 2.2e-07 31.4 0.0 0.032 14.6 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) MCM PF00493.23 BAD85453.1 - 5.9e-07 28.8 0.0 0.032 13.3 0.0 2.4 2 0 0 2 2 2 2 MCM P-loop domain RuvB_N PF05496.12 BAD85453.1 - 1.6e-06 28.0 0.1 0.03 14.1 0.0 2.5 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 BAD85453.1 - 4.7e-06 26.9 0.0 0.00072 19.8 0.0 2.7 2 0 0 2 2 2 1 AAA domain Sigma54_activ_2 PF14532.6 BAD85453.1 - 3.3e-05 24.0 0.0 0.37 10.9 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_3 PF07726.11 BAD85453.1 - 5.2e-05 23.1 0.0 0.07 13.0 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 BAD85453.1 - 0.0004 20.0 0.0 0.0008 19.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_30 PF13604.6 BAD85453.1 - 0.0004 20.1 0.0 0.026 14.3 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.6 BAD85453.1 - 0.0017 18.7 0.0 0.93 9.8 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 BAD85453.1 - 0.0026 18.1 0.0 0.0069 16.8 0.0 1.7 1 0 0 1 1 1 1 AAA ATPase domain S_4TM PF18159.1 BAD85453.1 - 0.004 16.5 0.7 0.048 13.0 0.0 2.2 2 0 0 2 2 2 1 SMODS-associating 4TM effector domain TIP49 PF06068.13 BAD85453.1 - 0.0048 16.2 0.1 0.52 9.5 0.0 2.8 3 0 0 3 3 3 1 TIP49 P-loop domain AAA_PrkA PF08298.11 BAD85453.1 - 0.015 14.2 0.0 0.6 9.0 0.0 2.2 2 0 0 2 2 2 0 PrkA AAA domain NACHT PF05729.12 BAD85453.1 - 0.028 14.4 0.0 0.077 12.9 0.0 1.8 1 0 0 1 1 1 0 NACHT domain PhoH PF02562.16 BAD85453.1 - 0.031 13.7 0.0 0.099 12.1 0.0 1.8 2 0 0 2 2 1 0 PhoH-like protein AAA_2 PF07724.14 BAD85453.1 - 0.034 14.3 0.2 17 5.5 0.0 3.5 3 1 0 3 3 3 0 AAA domain (Cdc48 subfamily) MMR_HSR1 PF01926.23 BAD85453.1 - 0.037 14.1 0.0 9.6 6.3 0.1 2.5 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_10 PF12846.7 BAD85453.1 - 0.049 12.5 0.1 0.13 11.1 0.0 1.7 2 0 0 2 2 1 0 AAA-like domain AAA_lid_3 PF17862.1 BAD85453.1 - 0.065 13.0 0.1 1 9.2 0.0 2.5 2 0 0 2 2 2 0 AAA+ lid domain DUF815 PF05673.13 BAD85453.1 - 0.072 12.2 0.0 0.23 10.6 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF815) AAA_29 PF13555.6 BAD85453.1 - 0.072 12.8 0.0 0.22 11.3 0.0 1.8 1 0 0 1 1 1 0 P-loop containing region of AAA domain IstB_IS21 PF01695.17 BAD85453.1 - 0.079 12.7 0.0 0.21 11.3 0.0 1.7 2 0 0 2 2 1 0 IstB-like ATP binding protein Parvo_NS1 PF01057.17 BAD85453.1 - 0.098 11.7 0.0 0.18 10.9 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 ABC_tran PF00005.27 BAD85453.1 - 0.11 13.0 0.0 0.39 11.2 0.0 1.9 2 0 0 2 2 1 0 ABC transporter MotB_plug PF13677.6 BAD85453.1 - 0.41 10.3 3.3 1.1 8.9 3.3 1.7 1 0 0 1 1 1 0 Membrane MotB of proton-channel complex MotA/MotB DUF898 PF05987.13 BAD85453.1 - 0.52 9.3 2.5 0.77 8.8 2.5 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF898) SPC25 PF06703.11 BAD85454.1 - 0.016 15.0 1.6 0.019 14.7 1.6 1.0 1 0 0 1 1 1 0 Microsomal signal peptidase 25 kDa subunit (SPC25) V_ATPase_prox PF18274.1 BAD85454.1 - 0.13 12.3 1.2 0.72 9.9 0.2 2.0 2 0 0 2 2 2 0 Vacuolar ATPase Subunit I N-terminal proximal lobe Holin_SPP1 PF04688.13 BAD85454.1 - 0.19 11.9 2.0 0.22 11.7 2.0 1.1 1 0 0 1 1 1 0 SPP1 phage holin CBS PF00571.28 BAD85455.1 - 8.8e-23 80.5 4.1 1e-13 51.5 0.3 2.4 2 0 0 2 2 2 2 CBS domain HTH_3 PF01381.22 BAD85455.1 - 1.7e-15 56.8 2.3 2.4e-15 56.3 1.4 1.7 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.7 BAD85455.1 - 5e-12 45.7 0.8 8.7e-12 44.9 0.5 1.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_31 PF13560.6 BAD85455.1 - 2.7e-11 43.6 0.1 4.8e-11 42.8 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 BAD85455.1 - 4.5e-06 27.0 0.7 9.1e-06 26.0 0.2 1.7 2 0 0 2 2 2 1 Cro/C1-type HTH DNA-binding domain MqsA_antitoxin PF15731.5 BAD85455.1 - 7.4e-05 22.9 0.0 0.00022 21.3 0.0 1.8 2 0 0 2 2 2 1 Antitoxin component of bacterial toxin-antitoxin system, MqsA HTH_37 PF13744.6 BAD85455.1 - 9.1e-05 22.3 0.1 0.00019 21.3 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 BAD85455.1 - 0.00011 22.0 0.1 0.00024 20.9 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Phage_TAC_12 PF12363.8 BAD85455.1 - 0.0041 17.5 0.0 0.0095 16.3 0.0 1.6 1 1 0 1 1 1 1 Phage tail assembly chaperone protein, TAC ComA PF02679.15 BAD85455.1 - 0.037 13.5 0.1 0.06 12.8 0.1 1.3 1 0 0 1 1 1 0 (2R)-phospho-3-sulfolactate synthase (ComA) EamA PF00892.20 BAD85456.1 - 1.2e-46 158.3 40.8 1.3e-23 83.7 18.5 2.0 2 0 0 2 2 2 2 EamA-like transporter family Sugar_transport PF06800.12 BAD85456.1 - 7.5e-10 38.6 16.3 1.3e-09 37.8 16.3 1.4 1 1 0 1 1 1 1 Sugar transport protein TPT PF03151.16 BAD85456.1 - 1.1e-07 31.6 12.1 8.5e-05 22.0 3.2 2.2 1 1 1 2 2 2 2 Triose-phosphate Transporter family RTX PF02382.15 BAD85456.1 - 0.00039 20.2 0.5 0.00061 19.6 0.5 1.2 1 0 0 1 1 1 1 N-terminal domain in RTX protein TMEM234 PF10639.9 BAD85456.1 - 0.0072 16.4 7.7 0.58 10.2 3.2 2.8 2 2 0 2 2 2 2 Putative transmembrane family 234 TrkA_N PF02254.18 BAD85458.1 - 2.4e-18 66.5 1.7 4.2e-18 65.7 0.3 2.2 2 0 0 2 2 2 1 TrkA-N domain DHHA1 PF02272.19 BAD85458.1 - 1.6e-16 61.0 1.1 3.3e-16 60.0 0.3 1.9 2 0 0 2 2 2 1 DHHA1 domain DHH PF01368.20 BAD85458.1 - 1.4e-11 44.5 0.0 2.9e-11 43.5 0.0 1.5 1 0 0 1 1 1 1 DHH family DAO PF01266.24 BAD85458.1 - 1.9e-05 24.4 0.0 3e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase ApbA PF02558.16 BAD85458.1 - 8.7e-05 22.2 0.1 0.00017 21.2 0.1 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA AlaDh_PNT_C PF01262.21 BAD85458.1 - 0.032 13.5 0.1 0.058 12.7 0.1 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Shikimate_DH PF01488.20 BAD85458.1 - 0.062 13.4 1.2 0.076 13.1 0.2 1.7 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase NmrA PF05368.13 BAD85458.1 - 0.067 12.7 0.1 0.14 11.7 0.1 1.5 1 0 0 1 1 1 0 NmrA-like family Sacchrp_dh_NADP PF03435.18 BAD85458.1 - 0.087 13.1 0.3 0.29 11.4 0.1 2.0 2 0 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain Trp_halogenase PF04820.14 BAD85458.1 - 0.17 10.7 0.1 0.29 10.0 0.1 1.3 1 0 0 1 1 1 0 Tryptophan halogenase PTPS PF01242.19 BAD85458.1 - 0.18 11.8 0.1 0.62 10.0 0.0 1.9 2 0 0 2 2 2 0 6-pyruvoyl tetrahydropterin synthase NAD_binding_8 PF13450.6 BAD85458.1 - 0.27 11.5 1.2 0.41 10.9 0.1 1.9 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain PRC PF05239.16 BAD85459.1 - 2.5e-12 46.7 0.9 2.8e-12 46.6 0.9 1.1 1 0 0 1 1 1 1 PRC-barrel domain LMBR1 PF04791.16 BAD85460.1 - 2.2 7.1 4.5 2.4 7.0 4.5 1.0 1 0 0 1 1 1 0 LMBR1-like membrane protein CTP-dep_RFKase PF01982.16 BAD85461.1 - 3.4e-38 130.5 0.0 5.2e-38 129.9 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF120 HTH_Crp_2 PF13545.6 BAD85461.1 - 9.6e-11 41.5 0.6 1.7e-10 40.7 0.6 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_24 PF13412.6 BAD85461.1 - 5.2e-09 35.5 0.1 1.1e-08 34.4 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 BAD85461.1 - 2.7e-08 33.5 0.4 4.6e-08 32.8 0.4 1.4 1 0 0 1 1 1 1 MarR family MarR PF01047.22 BAD85461.1 - 5.2e-07 29.5 0.1 8.7e-07 28.8 0.1 1.3 1 0 0 1 1 1 1 MarR family GntR PF00392.21 BAD85461.1 - 3.6e-05 23.3 0.2 9.1e-05 22.0 0.2 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family LexA_DNA_bind PF01726.16 BAD85461.1 - 4.1e-05 23.3 0.5 0.0057 16.4 0.1 2.4 2 0 0 2 2 2 1 LexA DNA binding domain HTH_20 PF12840.7 BAD85461.1 - 4.3e-05 23.5 0.3 8.7e-05 22.5 0.3 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.12 BAD85461.1 - 0.00016 21.4 0.1 0.00034 20.3 0.1 1.6 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain Rrf2 PF02082.20 BAD85461.1 - 0.00017 21.9 0.1 0.00032 21.0 0.1 1.4 1 0 0 1 1 1 1 Transcriptional regulator HTH_11 PF08279.12 BAD85461.1 - 0.00046 20.1 0.2 0.00089 19.2 0.2 1.4 1 0 0 1 1 1 1 HTH domain HTH_IclR PF09339.10 BAD85461.1 - 0.00054 19.7 0.1 0.0009 19.0 0.1 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_27 PF13463.6 BAD85461.1 - 0.00064 20.2 0.1 0.0013 19.2 0.1 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_AsnC-type PF13404.6 BAD85461.1 - 0.0011 18.7 0.2 0.0025 17.6 0.2 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain SgrR_N PF12793.7 BAD85461.1 - 0.0012 19.1 0.0 0.0017 18.5 0.0 1.2 1 0 0 1 1 1 1 Sugar transport-related sRNA regulator N-term TrmB PF01978.19 BAD85461.1 - 0.0014 18.5 0.0 0.0024 17.7 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.6 BAD85461.1 - 0.0019 17.9 0.0 0.0039 16.9 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain FeoC PF09012.10 BAD85461.1 - 0.002 18.1 0.0 0.0032 17.5 0.0 1.3 1 0 0 1 1 1 1 FeoC like transcriptional regulator DUF4364 PF14277.6 BAD85461.1 - 0.0021 17.8 0.0 0.0032 17.2 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) Crp PF00325.20 BAD85461.1 - 0.004 16.8 0.4 0.0083 15.8 0.1 1.7 2 0 0 2 2 1 1 Bacterial regulatory proteins, crp family RepL PF05732.11 BAD85461.1 - 0.0043 16.5 0.0 0.0063 16.0 0.0 1.2 1 0 0 1 1 1 1 Firmicute plasmid replication protein (RepL) HTH_29 PF13551.6 BAD85461.1 - 0.0045 17.0 0.0 0.008 16.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix HTH_17 PF12728.7 BAD85461.1 - 0.0099 16.1 0.0 0.037 14.2 0.1 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 BAD85461.1 - 0.013 15.3 0.0 0.031 14.1 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.19 BAD85461.1 - 0.018 15.3 0.0 0.037 14.2 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_38 PF13936.6 BAD85461.1 - 0.019 14.7 0.1 0.058 13.2 0.1 1.9 1 1 0 1 1 1 0 Helix-turn-helix domain Penicillinase_R PF03965.16 BAD85461.1 - 0.021 15.2 0.0 0.035 14.5 0.0 1.4 1 0 0 1 1 1 0 Penicillinase repressor HTH_7 PF02796.15 BAD85461.1 - 0.024 14.7 0.0 0.043 13.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_28 PF13518.6 BAD85461.1 - 0.03 14.4 0.1 0.062 13.4 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain MerR PF00376.23 BAD85461.1 - 0.047 13.5 0.5 0.5 10.2 0.5 2.4 1 1 0 1 1 1 0 MerR family regulatory protein DprA_WH PF17782.1 BAD85461.1 - 0.05 13.7 0.3 0.087 12.9 0.3 1.4 1 0 0 1 1 1 0 DprA winged helix domain HTH_36 PF13730.6 BAD85461.1 - 0.089 12.8 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_10 PF04967.12 BAD85461.1 - 0.12 12.2 0.0 0.22 11.3 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain Cdc6_C PF09079.11 BAD85461.1 - 0.12 12.4 0.0 0.29 11.1 0.0 1.6 1 0 0 1 1 1 0 CDC6, C terminal winged helix domain IF2_N PF04760.15 BAD85461.1 - 0.13 12.1 0.0 0.23 11.3 0.0 1.4 1 0 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region Peptidase_C23 PF05379.11 BAD85461.1 - 0.18 11.9 0.0 0.3 11.2 0.0 1.3 1 0 0 1 1 1 0 Carlavirus endopeptidase Methyltransf_25 PF13649.6 BAD85462.1 - 1.6e-25 89.6 0.0 2.8e-25 88.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 BAD85462.1 - 1.6e-19 70.3 0.0 3.1e-19 69.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 BAD85462.1 - 3.5e-16 59.4 0.0 4.5e-16 59.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 BAD85462.1 - 8.2e-14 51.5 0.0 1.1e-13 51.1 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 BAD85462.1 - 1.1e-13 51.7 0.0 2e-13 50.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 BAD85462.1 - 2.2e-09 37.4 0.0 3.2e-09 36.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 BAD85462.1 - 1.3e-08 34.6 0.0 1.9e-08 34.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain TehB PF03848.14 BAD85462.1 - 9.3e-07 28.5 0.0 1.3e-06 28.0 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_32 PF13679.6 BAD85462.1 - 0.00074 19.5 0.0 0.001 19.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 BAD85462.1 - 0.0014 17.7 0.0 0.0022 17.1 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase PrmA PF06325.13 BAD85462.1 - 0.0034 16.8 0.0 0.0048 16.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) CheR PF01739.18 BAD85462.1 - 0.0037 16.8 0.0 0.072 12.6 0.0 2.4 1 1 1 2 2 2 1 CheR methyltransferase, SAM binding domain MethyltransfD12 PF02086.15 BAD85462.1 - 0.0044 16.7 0.0 0.0054 16.4 0.0 1.3 1 0 0 1 1 1 1 D12 class N6 adenine-specific DNA methyltransferase Methyltransf_4 PF02390.17 BAD85462.1 - 0.0056 16.2 0.0 0.013 15.0 0.0 1.6 2 0 0 2 2 2 1 Putative methyltransferase FtsJ PF01728.19 BAD85462.1 - 0.0083 16.3 0.0 0.04 14.0 0.0 1.9 1 1 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_15 PF09445.10 BAD85462.1 - 0.012 15.3 0.0 0.019 14.5 0.0 1.4 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase TPMT PF05724.11 BAD85462.1 - 0.012 15.2 0.0 0.017 14.8 0.0 1.3 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) NodS PF05401.11 BAD85462.1 - 0.035 13.7 0.0 0.055 13.1 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) Methyltransf_2 PF00891.18 BAD85462.1 - 0.053 12.8 0.0 0.076 12.3 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase domain Bin3 PF06859.12 BAD85462.1 - 0.13 13.0 0.0 0.31 11.7 0.0 1.7 1 0 0 1 1 1 0 Bicoid-interacting protein 3 (Bin3) tRNA-synt_1 PF00133.22 BAD85463.1 - 3.8e-141 471.3 1.4 5.7e-140 467.4 1.4 2.1 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 BAD85463.1 - 5.1e-39 133.7 0.9 5.1e-39 133.7 0.9 1.8 2 0 0 2 2 2 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 BAD85463.1 - 7e-25 87.6 6.8 2e-15 56.5 0.0 3.6 4 0 0 4 4 4 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 BAD85463.1 - 6.9e-06 25.6 0.0 0.074 12.4 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.6 BAD85463.1 - 3.3e-05 23.5 0.1 0.00012 21.7 0.1 1.8 1 1 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 DUF2250 PF10007.9 BAD85463.1 - 0.013 15.6 0.4 3.4 7.8 0.0 2.6 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) NID PF07292.13 BAD85463.1 - 0.059 14.0 0.1 2.2 9.0 0.0 2.5 2 0 0 2 2 2 0 Nmi/IFP 35 domain (NID) CRS1_YhbY PF01985.21 BAD85464.1 - 7.8e-13 48.4 0.1 1.4e-12 47.6 0.1 1.4 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain GPP34 PF05719.11 BAD85464.1 - 0.01 15.9 0.6 0.073 13.1 0.5 1.9 1 1 1 2 2 2 0 Golgi phosphoprotein 3 (GPP34) Ribosomal_S19e PF01090.19 BAD85465.1 - 3e-58 195.4 0.0 3.4e-58 195.2 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e HTH_12 PF08461.10 BAD85465.1 - 9e-05 22.3 0.0 0.0043 17.0 0.0 2.8 3 0 0 3 3 3 1 Ribonuclease R winged-helix domain GntR PF00392.21 BAD85465.1 - 0.0016 18.0 0.0 0.0052 16.4 0.0 1.9 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_45 PF14947.6 BAD85465.1 - 0.041 13.9 0.0 0.062 13.3 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix TrmB PF01978.19 BAD85465.1 - 0.12 12.3 0.0 0.3 11.0 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB dsDNA_bind PF01984.20 BAD85467.1 - 1.2e-26 93.2 13.1 1.3e-26 93.0 13.1 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain PP2C_C PF07830.13 BAD85467.1 - 0.021 15.3 2.5 0.027 14.9 1.1 1.9 1 1 0 1 1 1 0 Protein serine/threonine phosphatase 2C, C-terminal domain Peptidase_S21 PF00716.17 BAD85467.1 - 0.074 12.7 0.9 0.09 12.5 0.9 1.1 1 0 0 1 1 1 0 Assemblin (Peptidase family S21) YebO PF13974.6 BAD85467.1 - 9.9 6.3 11.7 29 4.8 11.7 1.9 1 1 0 1 1 1 0 YebO-like protein TFIIB PF00382.19 BAD85469.1 - 1.8e-47 159.3 2.9 1.2e-24 86.1 0.2 2.4 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 BAD85469.1 - 1.5e-19 69.3 3.0 2.3e-19 68.6 3.0 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding HARE-HTH PF05066.13 BAD85469.1 - 6e-05 23.4 0.1 0.3 11.5 0.0 3.1 2 1 1 3 3 3 2 HB1, ASXL, restriction endonuclease HTH domain Sigma70_r4 PF04545.16 BAD85469.1 - 9.6e-05 21.8 1.1 0.0027 17.2 0.4 3.3 4 0 0 4 4 3 1 Sigma-70, region 4 RB_B PF01857.20 BAD85469.1 - 0.00026 21.0 0.0 0.0011 19.0 0.0 1.9 1 1 1 2 2 2 1 Retinoblastoma-associated protein B domain HTH_AsnC-type PF13404.6 BAD85469.1 - 0.0022 17.8 0.2 0.14 12.0 0.2 3.2 3 0 0 3 3 3 1 AsnC-type helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 BAD85469.1 - 0.0027 17.1 0.0 0.35 10.3 0.1 2.8 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 UPF0253 PF06786.12 BAD85469.1 - 0.01 16.1 0.2 0.39 11.0 0.1 2.9 3 0 0 3 3 3 0 Uncharacterised protein family (UPF0253) HTH_11 PF08279.12 BAD85469.1 - 0.035 14.0 0.3 9.1 6.3 0.1 2.7 3 0 0 3 3 2 0 HTH domain Prim_Zn_Ribbon PF08273.12 BAD85469.1 - 0.045 14.0 0.3 0.094 13.0 0.3 1.5 1 0 0 1 1 1 0 Zinc-binding domain of primase-helicase Rubredoxin PF00301.20 BAD85469.1 - 0.047 13.7 3.0 4.7 7.3 0.1 2.5 1 1 1 2 2 2 0 Rubredoxin GerE PF00196.19 BAD85469.1 - 0.047 13.2 0.0 0.66 9.6 0.1 2.6 3 0 0 3 3 3 0 Bacterial regulatory proteins, luxR family DUF29 PF01724.16 BAD85469.1 - 0.047 13.9 0.2 6.6 7.0 0.1 3.0 1 1 1 2 2 2 0 Domain of unknown function DUF29 Cyclin_C PF02984.19 BAD85469.1 - 0.054 13.6 0.0 9.9 6.3 0.0 2.2 1 1 1 2 2 2 0 Cyclin, C-terminal domain DUF2318 PF10080.9 BAD85469.1 - 0.057 13.5 0.3 0.11 12.7 0.3 1.4 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) zf-RRN7 PF11781.8 BAD85469.1 - 0.074 12.7 2.4 0.41 10.4 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 OrfB_Zn_ribbon PF07282.11 BAD85469.1 - 0.077 12.9 0.3 0.16 11.9 0.3 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain FYDLN_acid PF09538.10 BAD85469.1 - 0.078 13.7 0.0 0.17 12.6 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (FYDLN_acid) Ribosomal_S27e PF01667.17 BAD85469.1 - 0.08 12.7 0.7 0.14 11.9 0.7 1.3 1 0 0 1 1 1 0 Ribosomal protein S27 zf-ribbon_3 PF13248.6 BAD85469.1 - 0.085 12.3 1.8 5 6.7 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-C2H2_12 PF18658.1 BAD85469.1 - 0.11 12.1 1.0 0.29 10.7 0.0 2.1 1 1 1 2 2 2 0 Zinc-finger C2H2-type YceG PF02618.16 BAD85469.1 - 0.15 11.6 0.1 0.21 11.1 0.1 1.3 1 0 0 1 1 1 0 YceG-like family TFIIB_C_1 PF18542.1 BAD85469.1 - 0.35 10.9 4.8 1.2 9.2 0.3 2.8 2 1 0 2 2 2 0 Transcription factor IIB C-terminal module 1 A2L_zn_ribbon PF08792.10 BAD85469.1 - 0.84 9.4 2.4 3.8 7.4 2.4 1.9 1 1 0 1 1 1 0 A2L zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 BAD85469.1 - 1.4 9.0 5.2 0.17 11.9 0.8 1.8 2 0 0 2 2 1 0 Transposase zinc-ribbon domain XPG_I PF00867.18 BAD85470.1 - 9.5e-29 99.6 0.0 1.9e-28 98.6 0.0 1.5 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.17 BAD85470.1 - 3.5e-23 82.0 0.0 7.7e-23 80.9 0.0 1.5 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc_N PF02739.16 BAD85470.1 - 0.012 15.6 0.1 0.064 13.2 0.1 2.2 2 1 0 2 2 2 0 5'-3' exonuclease, N-terminal resolvase-like domain DUF4878 PF12870.7 BAD85470.1 - 0.049 13.9 0.3 0.12 12.7 0.3 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4878) TPR_8 PF13181.6 BAD85470.1 - 0.11 12.8 0.4 0.11 12.8 0.4 2.6 2 0 0 2 2 2 0 Tetratricopeptide repeat 5_3_exonuc PF01367.20 BAD85470.1 - 0.25 12.0 1.1 0.51 11.0 0.0 2.0 2 0 0 2 2 2 0 5'-3' exonuclease, C-terminal SAM fold MoeA_N PF03453.17 BAD85471.1 - 1.7e-45 154.6 0.4 1.5e-44 151.6 0.2 2.1 2 0 0 2 2 2 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 BAD85471.1 - 2.8e-24 85.4 0.0 4.2e-24 84.9 0.0 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 BAD85471.1 - 4.3e-19 68.4 0.2 1.6e-18 66.6 0.0 2.1 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) Asn_synthase PF00733.21 BAD85472.1 - 1.9e-06 27.8 0.0 3.2e-06 27.0 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.13 BAD85472.1 - 8.1e-05 22.2 0.0 0.00012 21.7 0.0 1.4 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC Diphthami_syn_2 PF01902.17 BAD85472.1 - 0.0024 17.4 0.0 0.005 16.4 0.0 1.6 2 0 0 2 2 2 1 Diphthamide synthase tRNA_Me_trans PF03054.16 BAD85472.1 - 0.0049 15.7 0.0 0.0071 15.2 0.0 1.3 1 1 0 1 1 1 1 tRNA methyl transferase ThiI PF02568.14 BAD85472.1 - 0.045 13.3 0.0 0.1 12.1 0.0 1.6 2 0 0 2 2 2 0 Thiamine biosynthesis protein (ThiI) Phage_holin_2_4 PF16082.5 BAD85472.1 - 0.11 12.3 0.0 0.21 11.3 0.0 1.4 1 0 0 1 1 1 0 Bacteriophage holin family, superfamily II-like Arginosuc_synth PF00764.19 BAD85472.1 - 0.11 11.7 0.0 0.19 11.0 0.0 1.3 1 1 0 1 1 1 0 Arginosuccinate synthase DUF296 PF03479.15 BAD85472.1 - 0.22 11.9 0.0 0.32 11.4 0.0 1.3 1 0 0 1 1 1 0 Plants and Prokaryotes Conserved (PCC) domain DJ-1_PfpI PF01965.24 BAD85473.1 - 1.2e-59 200.8 0.0 1.4e-59 200.6 0.0 1.0 1 0 0 1 1 1 1 DJ-1/PfpI family GATase PF00117.28 BAD85473.1 - 0.0011 18.7 0.0 0.0014 18.5 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Catalase_C PF18011.1 BAD85473.1 - 0.0034 17.0 0.0 0.0049 16.5 0.0 1.3 1 0 0 1 1 1 1 C-terminal domain found in long catalases ThiJ_like PF17124.5 BAD85473.1 - 0.0069 16.1 0.0 0.71 9.5 0.0 2.4 1 1 1 2 2 2 1 ThiJ/PfpI family-like GATase_3 PF07685.14 BAD85473.1 - 0.026 14.1 0.0 0.029 13.9 0.0 1.2 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain SNO PF01174.19 BAD85473.1 - 0.071 13.0 0.0 0.092 12.6 0.0 1.2 1 0 0 1 1 1 0 SNO glutamine amidotransferase family Peptidase_C26 PF07722.13 BAD85473.1 - 0.094 12.5 0.0 0.22 11.3 0.0 1.5 1 1 0 1 1 1 0 Peptidase C26 GATase_5 PF13507.6 BAD85473.1 - 0.2 10.7 0.0 0.31 10.1 0.0 1.5 1 1 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain AsnC_trans_reg PF01037.21 BAD85474.1 - 9.8e-19 67.1 0.1 1.4e-18 66.6 0.1 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_AsnC-type PF13404.6 BAD85474.1 - 9.3e-16 57.4 0.0 1.3e-15 56.9 0.0 1.2 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 BAD85474.1 - 3.9e-15 55.1 1.4 6.1e-15 54.5 1.4 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 BAD85474.1 - 1.9e-07 30.9 0.1 4.1e-07 29.8 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 BAD85474.1 - 3.4e-06 26.8 0.1 5.5e-06 26.2 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 BAD85474.1 - 5.8e-06 26.2 0.2 1.1e-05 25.3 0.2 1.4 1 0 0 1 1 1 1 HTH domain HTH_23 PF13384.6 BAD85474.1 - 6.7e-05 22.6 0.0 0.00035 20.3 0.0 2.0 2 0 0 2 2 2 1 Homeodomain-like domain NapD PF03927.13 BAD85474.1 - 0.00028 20.9 0.0 0.00058 19.9 0.0 1.4 1 0 0 1 1 1 1 NapD protein HTH_28 PF13518.6 BAD85474.1 - 0.00038 20.5 0.0 0.0012 18.9 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Mga PF08280.11 BAD85474.1 - 0.00062 19.7 1.3 0.0011 19.0 0.1 1.9 3 0 0 3 3 2 1 M protein trans-acting positive regulator (MGA) HTH domain AsnC_trans_reg2 PF17805.1 BAD85474.1 - 0.00096 19.3 0.2 0.0044 17.1 0.0 2.0 2 0 0 2 2 2 1 AsnC-like ligand binding domain MarR PF01047.22 BAD85474.1 - 0.0015 18.4 0.1 0.0028 17.6 0.1 1.4 1 0 0 1 1 1 1 MarR family LexA_DNA_bind PF01726.16 BAD85474.1 - 0.0017 18.1 0.1 0.0033 17.2 0.1 1.5 1 0 0 1 1 1 1 LexA DNA binding domain HTH_IclR PF09339.10 BAD85474.1 - 0.0031 17.3 0.0 0.006 16.4 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.6 BAD85474.1 - 0.005 16.8 0.0 0.009 16.0 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain RuvB_C PF05491.13 BAD85474.1 - 0.011 15.6 0.1 0.018 14.9 0.1 1.4 1 0 0 1 1 1 0 RuvB C-terminal winged helix domain Rrf2 PF02082.20 BAD85474.1 - 0.013 15.8 0.1 0.11 12.9 0.1 2.1 2 0 0 2 2 2 0 Transcriptional regulator HTH_20 PF12840.7 BAD85474.1 - 0.013 15.5 0.0 0.03 14.4 0.0 1.6 2 0 0 2 2 1 0 Helix-turn-helix domain HTH_10 PF04967.12 BAD85474.1 - 0.017 14.9 0.1 0.029 14.2 0.1 1.4 1 0 0 1 1 1 0 HTH DNA binding domain HTH_40 PF14493.6 BAD85474.1 - 0.019 15.4 0.3 0.053 14.0 0.3 1.9 1 1 0 1 1 1 0 Helix-turn-helix domain RepL PF05732.11 BAD85474.1 - 0.02 14.3 0.1 0.03 13.7 0.1 1.3 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_34 PF13601.6 BAD85474.1 - 0.024 14.8 0.0 0.041 14.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain B-block_TFIIIC PF04182.12 BAD85474.1 - 0.031 14.4 0.0 0.042 14.0 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_36 PF13730.6 BAD85474.1 - 0.043 13.8 0.4 0.08 12.9 0.4 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_DeoR PF08220.12 BAD85474.1 - 0.047 13.4 0.1 0.084 12.6 0.1 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_27 PF13463.6 BAD85474.1 - 0.049 14.1 0.1 0.12 12.9 0.1 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain Phage_AlpA PF05930.12 BAD85474.1 - 0.099 12.5 0.0 0.21 11.4 0.0 1.5 1 0 0 1 1 1 0 Prophage CP4-57 regulatory protein (AlpA) PadR PF03551.14 BAD85474.1 - 0.11 12.4 0.0 0.26 11.3 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family MarR_2 PF12802.7 BAD85474.1 - 0.13 12.1 0.0 0.22 11.4 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_29 PF13551.6 BAD85474.1 - 0.18 11.8 0.0 0.38 10.8 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn helix TGS PF02824.21 BAD85475.1 - 1e-23 83.1 0.0 8.3e-23 80.2 0.0 2.3 2 0 0 2 2 2 1 TGS domain MMR_HSR1 PF01926.23 BAD85475.1 - 1.7e-22 79.6 0.0 5.3e-22 78.1 0.0 1.8 1 1 0 1 1 1 1 50S ribosome-binding GTPase MMR_HSR1_Xtn PF16897.5 BAD85475.1 - 1.5e-20 73.2 0.1 3.1e-20 72.2 0.1 1.6 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain FeoB_N PF02421.18 BAD85475.1 - 6.2e-12 45.3 0.0 1.1e-10 41.3 0.0 2.3 2 0 0 2 2 2 1 Ferrous iron transport protein B MMR_HSR1_C PF08438.10 BAD85475.1 - 5.5e-05 23.7 0.4 0.0003 21.3 0.0 2.3 2 0 0 2 2 2 1 GTPase of unknown function C-terminal YchF-GTPase_C PF06071.13 BAD85475.1 - 6.8e-05 23.0 0.2 0.0086 16.3 0.2 2.6 1 1 0 1 1 1 1 Protein of unknown function (DUF933) SRPRB PF09439.10 BAD85475.1 - 0.0094 15.4 0.1 0.031 13.7 0.0 1.8 2 0 0 2 2 2 1 Signal recognition particle receptor beta subunit RsgA_GTPase PF03193.16 BAD85475.1 - 0.01 15.7 0.9 5.3 6.9 0.0 3.1 2 2 1 3 3 3 0 RsgA GTPase Dus PF01207.17 BAD85475.1 - 0.02 14.0 0.3 0.15 11.1 0.2 2.1 2 0 0 2 2 2 0 Dihydrouridine synthase (Dus) AAA_18 PF13238.6 BAD85475.1 - 0.091 13.3 0.0 0.29 11.7 0.0 1.9 1 0 0 1 1 1 0 AAA domain Myb_DNA-bind_4 PF13837.6 BAD85475.1 - 0.096 13.1 1.7 5.3 7.5 0.1 2.8 1 1 1 2 2 2 0 Myb/SANT-like DNA-binding domain AAA_22 PF13401.6 BAD85475.1 - 0.098 12.9 0.2 5.6 7.2 0.0 2.8 3 1 0 3 3 3 0 AAA domain UPRTase PF14681.6 BAD85476.1 - 1.4e-49 168.4 0.1 1.6e-49 168.2 0.1 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.27 BAD85476.1 - 1.2e-10 41.1 1.5 1.8e-10 40.6 1.5 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.6 BAD85476.1 - 0.0016 18.0 0.1 0.0047 16.4 0.0 1.6 1 1 1 2 2 2 1 Phosphoribosyl transferase AAA_lid_8 PF17868.1 BAD85476.1 - 0.1 12.5 0.1 0.31 11.0 0.0 1.8 2 0 0 2 2 2 0 AAA lid domain MatE PF01554.18 BAD85477.1 - 6.7e-57 191.6 36.1 1.8e-31 109.0 11.3 3.3 4 0 0 4 4 4 2 MatE Polysacc_synt_C PF14667.6 BAD85477.1 - 1.9e-11 44.2 1.5 1.9e-11 44.2 1.5 4.9 4 3 0 4 4 4 1 Polysaccharide biosynthesis C-terminal domain MatE PF01554.18 BAD85478.1 - 4.1e-57 192.3 19.6 1.5e-33 115.7 6.5 3.2 5 0 0 5 5 5 2 MatE Polysacc_synt_C PF14667.6 BAD85478.1 - 9.2e-09 35.5 2.3 9.2e-09 35.5 2.3 4.3 3 1 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain DUF373 PF04123.13 BAD85478.1 - 1.2 8.5 11.6 0.89 8.9 3.9 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF373) PIN PF01850.21 BAD85479.1 - 4.7e-21 75.5 3.3 6.4e-21 75.1 3.3 1.2 1 0 0 1 1 1 1 PIN domain MraZ PF02381.18 BAD85480.1 - 3.6e-05 23.7 0.0 3.7e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 MraZ protein, putative antitoxin-like MazE_antitoxin PF04014.18 BAD85480.1 - 0.019 14.9 2.5 0.019 14.9 2.5 2.3 2 1 0 2 2 2 0 Antidote-toxin recognition MazE, bacterial antitoxin PPDK_N PF01326.19 BAD85481.1 - 1.7e-116 389.1 1.8 2.5e-116 388.5 1.8 1.3 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.18 BAD85481.1 - 4e-99 331.5 0.0 7e-99 330.6 0.0 1.3 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.23 BAD85481.1 - 3.1e-29 100.5 1.1 8.2e-29 99.1 1.1 1.8 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain Mod_r PF07200.13 BAD85481.1 - 0.097 12.8 0.7 0.2 11.8 0.7 1.4 1 0 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein PMT_2 PF13231.6 BAD85482.1 - 3.9e-12 46.7 15.5 3.9e-12 46.7 15.5 2.8 4 0 0 4 4 4 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Glyco_hydro_127 PF07944.12 BAD85482.1 - 0.00074 18.1 0.6 0.0038 15.8 0.1 1.9 2 0 0 2 2 2 1 Beta-L-arabinofuranosidase, GH127 C5-epim_C PF06662.13 BAD85482.1 - 0.00097 18.7 2.7 0.0067 15.9 0.3 2.5 2 0 0 2 2 2 1 D-glucuronyl C5-epimerase C-terminus Pec_lyase PF09492.10 BAD85482.1 - 0.006 15.9 5.1 0.1 11.9 1.2 2.4 2 0 0 2 2 2 2 Pectic acid lyase DoxX_2 PF13564.6 BAD85482.1 - 0.091 12.9 6.0 0.95 9.6 1.6 2.8 2 0 0 2 2 2 0 DoxX-like family LANC_like PF05147.13 BAD85482.1 - 0.11 11.1 0.0 0.36 9.4 0.0 1.8 1 1 0 1 1 1 0 Lanthionine synthetase C-like protein DUF2518 PF10726.9 BAD85483.1 - 0.029 14.0 2.8 0.07 12.8 2.8 1.7 1 0 0 1 1 1 0 Protein of function (DUF2518) Peptidase_C1 PF00112.23 BAD85484.1 - 1.8e-06 28.2 5.4 2.1e-05 24.7 5.2 2.3 2 0 0 2 2 2 1 Papain family cysteine protease Peptidase_C1_2 PF03051.15 BAD85484.1 - 0.0042 15.9 0.8 0.0042 15.9 0.8 1.8 2 0 0 2 2 2 1 Peptidase C1-like family Big_3_4 PF13754.6 BAD85484.1 - 0.035 13.8 0.2 0.15 11.9 0.2 2.2 1 0 0 1 1 1 0 Domain of unknown function TPR_1 PF00515.28 BAD85484.1 - 0.094 12.6 2.7 0.69 9.8 0.9 3.1 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_8 PF13181.6 BAD85484.1 - 0.36 11.2 2.5 0.6 10.5 0.3 2.6 2 0 0 2 2 2 0 Tetratricopeptide repeat GPI-anchored PF10342.9 BAD85484.1 - 0.71 10.7 6.7 0.41 11.4 0.2 3.6 2 1 0 3 3 3 0 Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family ATP-synt_DE_N PF02823.16 BAD85484.1 - 1.6 8.7 6.7 2.8 7.9 1.6 2.9 2 0 0 2 2 2 0 ATP synthase, Delta/Epsilon chain, beta-sandwich domain DUF424 PF04242.13 BAD85485.1 - 4.7e-33 113.3 0.0 5.2e-33 113.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) NMD3 PF04981.13 BAD85486.1 - 7.6e-67 225.3 0.9 7.6e-67 225.3 0.9 1.4 2 0 0 2 2 2 1 NMD3 family EFP PF01132.20 BAD85486.1 - 0.016 15.2 0.7 0.062 13.4 0.7 2.0 1 1 0 1 1 1 0 Elongation factor P (EF-P) OB domain DUF4222 PF13973.6 BAD85486.1 - 0.062 12.9 0.1 0.14 11.8 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4222) GFA PF04828.14 BAD85486.1 - 0.46 10.9 2.7 9.4 6.7 0.0 3.2 3 0 0 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme DZR PF12773.7 BAD85486.1 - 0.75 9.9 6.7 22 5.2 4.2 3.0 2 1 0 2 2 2 0 Double zinc ribbon zf-ribbon_3 PF13248.6 BAD85486.1 - 1.2 8.6 3.9 13 5.3 0.0 3.1 3 0 0 3 3 3 0 zinc-ribbon domain Rpr2 PF04032.16 BAD85486.1 - 1.3 9.3 5.0 5.9 7.3 0.0 2.9 3 0 0 3 3 3 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain DUF1464 PF07318.12 BAD85487.1 - 2.1e-137 457.7 0.7 2.3e-137 457.5 0.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1464) Pyr_redox_2 PF07992.14 BAD85488.1 - 5.3e-57 193.3 0.7 7.1e-57 192.9 0.7 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 BAD85488.1 - 5.4e-22 78.2 8.0 2.3e-17 63.3 2.4 3.5 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 BAD85488.1 - 1.2e-18 67.4 0.0 2.5e-18 66.3 0.0 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_3 PF13738.6 BAD85488.1 - 9.6e-17 61.2 1.5 4.9e-14 52.3 0.2 2.5 1 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 BAD85488.1 - 4.5e-08 33.1 1.7 0.038 13.6 0.0 4.0 4 0 0 4 4 4 3 FAD dependent oxidoreductase HI0933_like PF03486.14 BAD85488.1 - 1.7e-07 30.3 0.7 0.0083 14.9 0.0 4.0 3 1 1 4 4 4 2 HI0933-like protein NAD_binding_7 PF13241.6 BAD85488.1 - 2.5e-07 31.1 0.6 0.00084 19.7 0.2 2.5 2 0 0 2 2 2 2 Putative NAD(P)-binding NAD_binding_8 PF13450.6 BAD85488.1 - 6.5e-05 23.1 0.1 0.0042 17.3 0.0 2.5 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain 3HCDH_N PF02737.18 BAD85488.1 - 6.7e-05 22.8 0.4 0.00033 20.6 0.1 2.0 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Lycopene_cycl PF05834.12 BAD85488.1 - 7.3e-05 22.0 0.2 0.015 14.4 0.0 2.7 2 1 0 2 2 2 1 Lycopene cyclase protein TrkA_N PF02254.18 BAD85488.1 - 7.4e-05 23.0 1.7 0.13 12.5 1.0 3.3 2 1 0 2 2 2 1 TrkA-N domain FAD_binding_2 PF00890.24 BAD85488.1 - 0.00014 21.1 1.2 0.064 12.3 0.0 2.7 2 1 0 2 2 2 2 FAD binding domain GIDA PF01134.22 BAD85488.1 - 0.00019 20.7 5.9 0.17 10.9 0.1 3.8 3 1 2 5 5 5 2 Glucose inhibited division protein A UDPG_MGDP_dh_N PF03721.14 BAD85488.1 - 0.0002 21.0 0.1 0.0004 20.0 0.1 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_9 PF13454.6 BAD85488.1 - 0.00026 21.0 0.6 1.5 8.8 0.0 3.7 3 1 1 4 4 4 1 FAD-NAD(P)-binding Amino_oxidase PF01593.24 BAD85488.1 - 0.0011 18.4 0.1 0.98 8.6 0.1 2.6 2 1 0 2 2 2 2 Flavin containing amine oxidoreductase K_oxygenase PF13434.6 BAD85488.1 - 0.0023 17.1 0.0 0.068 12.3 0.0 2.5 2 1 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) AlaDh_PNT_C PF01262.21 BAD85488.1 - 0.0042 16.4 0.3 0.35 10.1 0.0 2.4 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Sacchrp_dh_NADP PF03435.18 BAD85488.1 - 0.013 15.7 0.4 0.17 12.2 0.1 2.2 2 0 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain Trp_halogenase PF04820.14 BAD85488.1 - 0.014 14.3 0.8 0.31 9.8 0.1 2.4 2 1 0 2 2 2 0 Tryptophan halogenase F420_oxidored PF03807.17 BAD85488.1 - 0.029 14.9 0.1 0.3 11.7 0.0 2.4 3 0 0 3 3 2 0 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 BAD85488.1 - 0.03 14.5 0.1 0.22 11.7 0.1 2.1 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase Mqo PF06039.15 BAD85488.1 - 0.04 12.5 0.0 0.065 11.8 0.0 1.3 1 0 0 1 1 1 0 Malate:quinone oxidoreductase (Mqo) Shikimate_DH PF01488.20 BAD85488.1 - 0.042 13.9 1.3 0.18 11.8 0.2 2.2 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase Thi4 PF01946.17 BAD85488.1 - 0.09 12.0 0.1 0.32 10.2 0.0 2.0 3 0 0 3 3 3 0 Thi4 family ApbA PF02558.16 BAD85488.1 - 0.11 12.2 0.7 0.18 11.5 0.1 1.7 2 0 0 2 2 1 0 Ketopantoate reductase PanE/ApbA 2-Hacid_dh_C PF02826.19 BAD85488.1 - 0.11 11.9 0.1 13 5.0 0.0 2.3 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FAD_binding_3 PF01494.19 BAD85488.1 - 0.19 11.0 0.7 9.5 5.3 0.2 2.7 3 0 0 3 3 3 0 FAD binding domain Ion_trans_2 PF07885.16 BAD85489.1 - 1.2e-13 50.9 5.5 2.1e-13 50.0 5.5 1.4 1 0 0 1 1 1 1 Ion channel zf-C3Hc3H PF13891.6 BAD85489.1 - 0.0081 16.5 0.1 0.013 15.8 0.1 1.3 1 0 0 1 1 1 1 Potential DNA-binding domain zf-TRM13_CCCH PF11722.8 BAD85489.1 - 0.041 13.6 0.2 0.092 12.5 0.2 1.6 1 0 0 1 1 1 0 CCCH zinc finger in TRM13 protein TPR_7 PF13176.6 BAD85489.1 - 0.11 12.6 0.2 0.25 11.5 0.2 1.6 1 0 0 1 1 1 0 Tetratricopeptide repeat FAD_binding_2 PF00890.24 BAD85489.1 - 0.2 10.7 0.0 0.31 10.1 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain NAD_kinase PF01513.21 BAD85490.1 - 7.8e-47 159.9 0.1 9e-47 159.7 0.1 1.0 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 BAD85490.1 - 1.2e-06 28.1 0.5 7.8e-06 25.5 0.1 2.5 3 0 0 3 3 3 1 Diacylglycerol kinase catalytic domain GTP_EFTU_D4 PF14578.6 BAD85494.1 - 3.9e-30 103.6 0.9 1.5e-29 101.8 0.9 2.1 1 0 0 1 1 1 1 Elongation factor Tu domain 4 GTP_EFTU PF00009.27 BAD85494.1 - 6.3e-29 100.9 0.1 4.8e-25 88.2 0.0 3.3 4 0 0 4 4 4 2 Elongation factor Tu GTP binding domain IF-2 PF11987.8 BAD85494.1 - 1.9e-23 82.6 3.0 5.3e-23 81.1 2.1 2.2 2 0 0 2 2 2 1 Translation-initiation factor 2 Intein_splicing PF14890.6 BAD85494.1 - 1.3e-22 80.2 0.0 4.6e-22 78.4 0.0 2.0 1 1 0 1 1 1 1 Intein splicing domain LAGLIDADG_3 PF14528.6 BAD85494.1 - 3.4e-20 72.1 0.8 3.4e-20 72.1 0.8 3.0 4 0 0 4 4 4 1 LAGLIDADG-like domain GTP_EFTU_D2 PF03144.25 BAD85494.1 - 2.4e-16 59.9 13.8 2.1e-13 50.4 0.2 4.1 5 0 0 5 5 5 2 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 BAD85494.1 - 0.0016 18.5 0.0 0.0056 16.8 0.0 2.0 1 0 0 1 1 1 1 50S ribosome-binding GTPase LAGLIDADG_WhiA PF14527.6 BAD85494.1 - 0.0031 17.5 0.1 0.035 14.2 0.0 2.8 2 0 0 2 2 2 1 WhiA LAGLIDADG-like domain HTH_3 PF01381.22 BAD85494.1 - 0.041 13.9 0.1 2.9 8.0 0.0 3.3 3 0 0 3 3 3 0 Helix-turn-helix RPAP1_N PF08621.10 BAD85494.1 - 0.078 12.8 0.5 0.23 11.3 0.5 1.8 1 0 0 1 1 1 0 RPAP1-like, N-terminal DUF4118 PF13493.6 BAD85495.1 - 0.17 11.7 15.3 1.3 8.8 0.5 3.3 3 0 0 3 3 3 0 Domain of unknown function (DUF4118) NDK PF00334.19 BAD85496.1 - 1.9e-56 189.8 0.0 2.5e-56 189.4 0.0 1.2 1 0 0 1 1 1 1 Nucleoside diphosphate kinase DUF5068 PF16781.5 BAD85497.1 - 0.055 13.2 0.0 0.17 11.7 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF5068) FeS_assembly_P PF01883.19 BAD85497.1 - 0.13 12.5 0.2 0.43 10.8 0.0 1.9 2 0 0 2 2 2 0 Iron-sulfur cluster assembly protein Ribosomal_L24e PF01246.20 BAD85498.1 - 3.5e-25 88.0 3.8 3.7e-25 87.9 3.8 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e DUF3268 PF11672.8 BAD85498.1 - 0.006 16.9 0.2 0.0063 16.8 0.2 1.1 1 0 0 1 1 1 1 zinc-finger-containing domain zf-FCS PF06467.14 BAD85498.1 - 0.0088 16.0 2.7 0.014 15.3 2.7 1.3 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif zf-C2HC_2 PF13913.6 BAD85498.1 - 0.031 14.2 0.4 0.031 14.2 0.4 1.9 2 0 0 2 2 2 0 zinc-finger of a C2HC-type YHS PF04945.13 BAD85498.1 - 0.041 14.0 0.9 0.06 13.5 0.5 1.5 1 1 0 1 1 1 0 YHS domain NosL PF05573.12 BAD85498.1 - 0.16 12.4 0.1 0.17 12.3 0.1 1.1 1 0 0 1 1 1 0 NosL DUF2256 PF10013.9 BAD85498.1 - 6.4 7.0 9.9 3.6 7.8 4.6 2.7 2 1 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2256) Ribosomal_S28e PF01200.18 BAD85499.1 - 1.3e-30 105.2 5.6 1.4e-30 105.1 5.6 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L7Ae PF01248.26 BAD85500.1 - 5.1e-33 112.7 0.2 6.3e-33 112.4 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.6 BAD85500.1 - 5e-05 23.1 0.1 7.5e-05 22.5 0.1 1.3 1 0 0 1 1 1 1 PELOTA RNA binding domain eRF1_3 PF03465.15 BAD85500.1 - 0.021 15.3 0.0 0.023 15.2 0.0 1.3 1 0 0 1 1 1 0 eRF1 domain 3 ATPase PF06745.13 BAD85501.1 - 6.6e-14 51.8 0.0 9e-14 51.4 0.0 1.2 1 0 0 1 1 1 1 KaiC V4R PF02830.18 BAD85501.1 - 1.9e-13 50.2 0.1 3.1e-13 49.5 0.1 1.3 1 0 0 1 1 1 1 V4R domain Pneumo_matrix PF03393.16 BAD85501.1 - 0.12 11.6 0.0 0.53 9.5 0.0 1.8 1 1 1 2 2 2 0 Pneumovirus matrix protein TF_Zn_Ribbon PF08271.12 BAD85502.1 - 3.9e-05 23.1 1.4 8.9e-05 21.9 1.4 1.6 1 0 0 1 1 1 1 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.7 BAD85502.1 - 0.00092 19.1 0.3 0.0016 18.4 0.3 1.4 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Lar_restr_allev PF14354.6 BAD85502.1 - 0.0013 19.1 0.2 0.0022 18.4 0.2 1.4 1 0 0 1 1 1 1 Restriction alleviation protein Lar eIF-5_eIF-2B PF01873.17 BAD85502.1 - 0.002 18.0 0.5 0.0037 17.1 0.5 1.5 1 0 0 1 1 1 1 Domain found in IF2B/IF5 Zn-ribbon_8 PF09723.10 BAD85502.1 - 0.0029 17.7 0.1 1.7 8.8 0.0 2.4 2 0 0 2 2 2 1 Zinc ribbon domain DUF951 PF06107.11 BAD85502.1 - 0.0058 16.5 0.5 0.021 14.7 0.1 2.1 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF951) OrfB_Zn_ribbon PF07282.11 BAD85502.1 - 0.0061 16.5 1.1 0.011 15.6 1.1 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zinc_ribbon_4 PF13717.6 BAD85502.1 - 0.011 15.7 3.1 0.042 13.8 2.1 2.5 2 1 0 2 2 2 0 zinc-ribbon domain Elf1 PF05129.13 BAD85502.1 - 0.013 15.5 0.1 0.025 14.6 0.1 1.5 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like zf-ribbon_3 PF13248.6 BAD85502.1 - 0.022 14.1 0.5 1.7 8.2 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain HypA PF01155.19 BAD85502.1 - 0.035 14.1 1.8 1.1 9.2 0.1 2.7 2 1 1 3 3 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF35_N PF12172.8 BAD85502.1 - 0.038 13.9 3.0 4.8 7.2 0.2 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) FdhE PF04216.12 BAD85502.1 - 0.038 13.9 0.6 0.053 13.4 0.6 1.2 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation zinc_ribbon_10 PF10058.9 BAD85502.1 - 0.039 13.7 0.3 0.066 12.9 0.3 1.4 1 0 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein Nudix_N_2 PF14803.6 BAD85502.1 - 0.048 13.6 3.5 0.14 12.1 3.5 1.8 1 0 0 1 1 1 0 Nudix N-terminal Ribosomal_L27A PF00828.19 BAD85502.1 - 0.06 14.0 0.1 0.095 13.4 0.1 1.3 1 0 0 1 1 1 0 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A PhnA_Zn_Ribbon PF08274.12 BAD85502.1 - 0.071 13.1 4.7 0.086 12.8 0.7 2.4 2 0 0 2 2 2 0 PhnA Zinc-Ribbon DUF4503 PF14951.6 BAD85502.1 - 0.092 11.2 0.1 0.13 10.7 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4503) TFIIS_C PF01096.18 BAD85502.1 - 0.12 12.3 4.3 4.4 7.2 4.3 2.3 1 1 0 1 1 1 0 Transcription factor S-II (TFIIS) zf-NADH-PPase PF09297.11 BAD85502.1 - 0.12 12.0 3.0 0.83 9.4 3.0 2.1 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain Zn_ribbon_recom PF13408.6 BAD85502.1 - 0.13 12.8 0.1 10 6.7 0.0 2.4 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain UPF0547 PF10571.9 BAD85502.1 - 0.15 12.1 5.8 1.4 9.1 0.2 2.5 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 ADK_lid PF05191.14 BAD85502.1 - 0.17 11.9 1.1 3.2 7.8 0.1 2.4 2 0 0 2 2 2 0 Adenylate kinase, active site lid zf-ACC PF17848.1 BAD85502.1 - 0.28 11.3 1.3 4.3 7.5 0.3 2.4 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain zinc_ribbon_2 PF13240.6 BAD85502.1 - 0.52 10.1 3.8 1.1 9.1 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Rubredoxin_2 PF18073.1 BAD85502.1 - 0.84 9.4 3.3 19 5.1 0.3 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain DNA_RNApol_7kD PF03604.13 BAD85502.1 - 1.7 8.4 4.5 9.1 6.1 4.5 2.2 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit AAA_14 PF13173.6 BAD85503.1 - 1.3e-34 119.0 0.0 4.1e-34 117.4 0.0 1.7 2 0 0 2 2 2 1 AAA domain DUF4143 PF13635.6 BAD85503.1 - 4.1e-11 43.1 0.0 6.8e-11 42.4 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) TrmB PF01978.19 BAD85503.1 - 0.013 15.4 0.7 0.32 10.9 0.1 2.8 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB ATPase_2 PF01637.18 BAD85503.1 - 0.037 13.9 0.0 0.1 12.5 0.0 1.6 1 1 1 2 2 2 0 ATPase domain predominantly from Archaea PAPS_reduct PF01507.19 BAD85504.1 - 4.5e-45 153.8 0.0 1.1e-44 152.5 0.0 1.7 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family PUA PF01472.20 BAD85504.1 - 2.3e-16 59.5 0.6 5.8e-16 58.2 0.6 1.7 1 0 0 1 1 1 1 PUA domain Fer4_7 PF12838.7 BAD85504.1 - 4.1e-10 40.1 9.3 1.3e-09 38.5 9.3 1.9 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 BAD85504.1 - 4.9e-09 35.6 14.0 0.00011 21.8 4.2 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 BAD85504.1 - 6.5e-08 32.6 7.9 1.7e-07 31.3 7.9 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 BAD85504.1 - 2.4e-06 27.5 21.9 0.00019 21.5 11.8 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 BAD85504.1 - 3.8e-06 26.9 8.0 3.8e-06 26.9 8.0 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 BAD85504.1 - 1.1e-05 26.2 7.3 0.068 14.1 0.1 3.1 3 0 0 3 3 2 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 BAD85504.1 - 9.6e-05 22.3 13.7 0.00038 20.4 3.0 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 BAD85504.1 - 0.00011 22.7 9.6 0.059 13.9 0.7 2.7 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_8 PF13183.6 BAD85504.1 - 0.00011 22.6 10.0 0.017 15.5 0.8 3.1 4 0 0 4 4 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 BAD85504.1 - 0.00063 19.7 15.3 0.00085 19.3 2.5 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 BAD85504.1 - 0.0028 18.0 1.7 0.0028 18.0 1.7 3.1 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_11 PF13247.6 BAD85504.1 - 0.021 14.9 2.0 0.044 13.9 2.0 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 BAD85504.1 - 0.21 12.5 5.2 2.6 9.0 0.4 2.7 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 BAD85504.1 - 0.27 12.0 9.0 2.1 9.2 1.8 3.4 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_13 PF13370.6 BAD85504.1 - 0.51 10.9 7.4 2 9.0 1.3 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 BAD85504.1 - 0.8 9.9 10.1 0.39 10.9 7.0 2.0 2 1 0 2 2 1 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 BAD85504.1 - 2.9 9.0 22.3 0.16 13.0 4.2 3.0 3 0 0 3 3 2 0 4Fe-4S binding domain Band_7 PF01145.25 BAD85505.1 - 7.4e-42 143.4 3.5 1.3e-41 142.6 3.5 1.5 1 1 0 1 1 1 1 SPFH domain / Band 7 family Flot PF15975.5 BAD85505.1 - 0.0027 17.9 4.3 0.0027 17.9 4.3 2.1 1 1 1 2 2 2 2 Flotillin Band_7_1 PF13421.6 BAD85505.1 - 0.021 14.6 0.1 0.03 14.0 0.1 1.3 1 0 0 1 1 1 0 SPFH domain-Band 7 family NfeD PF01957.18 BAD85506.1 - 1.2e-15 57.6 2.5 1.2e-15 57.6 2.5 1.7 3 0 0 3 3 3 1 NfeD-like C-terminal, partner-binding Intein_splicing PF14890.6 BAD85506.1 - 0.0018 18.2 0.5 0.0022 18.0 0.5 1.1 1 0 0 1 1 1 1 Intein splicing domain DUF2929 PF11151.8 BAD85506.1 - 0.077 13.3 1.9 0.077 13.3 1.9 2.4 1 1 2 3 3 3 0 Protein of unknown function (DUF2929) 7TM_GPCR_Srh PF10318.9 BAD85506.1 - 0.57 9.2 9.5 0.68 8.9 9.5 1.0 1 0 0 1 1 1 0 Serpentine type 7TM GPCR chemoreceptor Srh MS_channel PF00924.18 BAD85506.1 - 3.4 7.2 7.6 22 4.5 3.8 2.1 2 0 0 2 2 2 0 Mechanosensitive ion channel TK PF00265.18 BAD85507.1 - 4.1e-52 176.6 0.0 4.7e-52 176.4 0.0 1.0 1 0 0 1 1 1 1 Thymidine kinase AAA_14 PF13173.6 BAD85507.1 - 0.00037 20.5 0.0 0.00089 19.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain zf-C4_ClpX PF06689.13 BAD85507.1 - 0.14 12.1 0.0 0.27 11.2 0.0 1.5 1 0 0 1 1 1 0 ClpX C4-type zinc finger AAA_30 PF13604.6 BAD85507.1 - 0.2 11.4 0.0 0.29 10.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain Ribosomal_L39 PF00832.20 BAD85508.1 - 7.2e-23 80.0 14.9 8.6e-23 79.7 14.9 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein Ribosomal_L31e PF01198.19 BAD85509.1 - 1.1e-09 38.3 1.1 1.4e-09 38.0 1.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L31e Glyco_tranf_2_3 PF13641.6 BAD85509.1 - 0.035 14.0 0.0 0.041 13.8 0.0 1.0 1 0 0 1 1 1 0 Glycosyltransferase like family 2 eIF-6 PF01912.18 BAD85510.1 - 4.7e-69 231.7 0.0 5.9e-69 231.4 0.0 1.1 1 0 0 1 1 1 1 eIF-6 family Ribosomal_L18A PF01775.17 BAD85511.1 - 2.5e-12 47.0 0.1 3.1e-12 46.7 0.1 1.1 1 0 0 1 1 1 1 Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A Glycos_transf_1 PF00534.20 BAD85512.1 - 2e-48 164.2 0.0 3.3e-48 163.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 BAD85512.1 - 4e-40 137.4 0.1 6.2e-40 136.7 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 BAD85512.1 - 7.6e-30 104.1 0.1 1.6e-28 99.8 0.1 2.2 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 BAD85512.1 - 6.9e-12 45.6 0.0 2e-10 40.9 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 BAD85512.1 - 2.8e-10 40.9 0.0 2.6e-09 37.7 0.0 2.3 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_5 PF08323.11 BAD85512.1 - 1.5e-08 34.7 0.9 7.6e-05 22.5 0.1 2.3 2 0 0 2 2 2 2 Starch synthase catalytic domain Glyco_trans_4_2 PF13477.6 BAD85512.1 - 0.00054 20.0 0.2 0.0013 18.7 0.2 1.7 1 1 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_4_5 PF16994.5 BAD85512.1 - 0.001 18.7 0.0 0.0026 17.4 0.0 1.6 1 0 0 1 1 1 1 Glycosyl-transferase family 4 PIGA PF08288.12 BAD85512.1 - 0.008 16.7 0.6 0.02 15.5 0.6 1.6 1 0 0 1 1 1 1 PIGA (GPI anchor biosynthesis) Peripla_BP_4 PF13407.6 BAD85512.1 - 0.14 11.7 0.2 0.33 10.5 0.2 1.6 1 1 0 1 1 1 0 Periplasmic binding protein domain UbiA PF01040.18 BAD85513.1 - 2.2e-32 112.4 15.0 2.7e-32 112.1 15.0 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family Pyr_redox_2 PF07992.14 BAD85514.1 - 1.7e-39 135.8 4.2 2.5e-39 135.3 4.2 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_20 PF14691.6 BAD85514.1 - 2.3e-39 133.7 0.9 3.6e-39 133.1 0.9 1.3 1 0 0 1 1 1 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Pyr_redox PF00070.27 BAD85514.1 - 8.9e-18 64.6 8.4 9.4e-10 38.9 0.8 3.7 3 1 0 3 3 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 BAD85514.1 - 1.4e-15 57.4 5.2 2.4e-11 43.4 0.2 2.5 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 BAD85514.1 - 6.4e-10 39.1 1.2 4.4e-08 33.2 0.1 2.5 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.21 BAD85514.1 - 6.5e-10 38.7 1.3 0.00019 20.8 0.1 2.4 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain 2-Hacid_dh_C PF02826.19 BAD85514.1 - 2.6e-07 30.2 0.4 0.0093 15.3 0.0 2.9 3 0 0 3 3 3 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Thi4 PF01946.17 BAD85514.1 - 3.8e-07 29.6 0.4 2.9e-05 23.4 0.1 2.3 2 0 0 2 2 2 1 Thi4 family GIDA PF01134.22 BAD85514.1 - 4.9e-07 29.2 3.2 0.00042 19.5 0.0 2.9 3 1 1 4 4 4 2 Glucose inhibited division protein A Shikimate_DH PF01488.20 BAD85514.1 - 8.5e-07 29.1 0.2 0.35 10.9 0.0 3.6 3 0 0 3 3 3 2 Shikimate / quinate 5-dehydrogenase FAD_binding_3 PF01494.19 BAD85514.1 - 1.5e-06 27.8 0.2 3.1e-05 23.4 0.1 2.1 2 0 0 2 2 2 1 FAD binding domain HI0933_like PF03486.14 BAD85514.1 - 1.7e-06 27.0 5.6 3.4e-05 22.7 0.4 2.6 3 0 0 3 3 3 2 HI0933-like protein NAD_binding_7 PF13241.6 BAD85514.1 - 3.6e-06 27.4 2.8 0.0081 16.6 0.7 2.8 2 1 0 2 2 2 2 Putative NAD(P)-binding PALP PF00291.25 BAD85514.1 - 6.8e-06 25.7 0.0 0.022 14.2 0.0 2.2 2 0 0 2 2 2 2 Pyridoxal-phosphate dependent enzyme IlvN PF07991.12 BAD85514.1 - 1.2e-05 24.9 0.3 0.024 14.2 0.1 2.5 2 0 0 2 2 2 2 Acetohydroxy acid isomeroreductase, NADPH-binding domain FAD_binding_2 PF00890.24 BAD85514.1 - 1.3e-05 24.4 6.5 0.00025 20.3 0.4 3.1 3 0 0 3 3 3 1 FAD binding domain FAD_oxidored PF12831.7 BAD85514.1 - 4.3e-05 23.1 3.3 0.0079 15.6 0.0 2.8 3 0 0 3 3 3 2 FAD dependent oxidoreductase FMO-like PF00743.19 BAD85514.1 - 0.0001 20.9 0.0 0.0022 16.5 0.0 2.1 2 0 0 2 2 2 1 Flavin-binding monooxygenase-like DAO PF01266.24 BAD85514.1 - 0.00013 21.7 8.7 0.00096 18.8 1.1 3.5 3 1 1 4 4 4 1 FAD dependent oxidoreductase Amino_oxidase PF01593.24 BAD85514.1 - 0.00039 19.8 1.7 0.0033 16.8 0.1 2.5 3 0 0 3 3 3 1 Flavin containing amine oxidoreductase NAD_binding_9 PF13454.6 BAD85514.1 - 0.001 19.1 0.7 0.083 12.9 0.2 2.5 2 0 0 2 2 2 1 FAD-NAD(P)-binding F420_oxidored PF03807.17 BAD85514.1 - 0.0014 19.2 4.8 0.4 11.3 0.7 3.8 3 1 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent XdhC_C PF13478.6 BAD85514.1 - 0.0021 18.5 0.5 0.46 11.0 0.0 2.6 3 0 0 3 3 2 1 XdhC Rossmann domain YjeF_N PF03853.15 BAD85514.1 - 0.0025 17.7 0.0 2.9 7.7 0.0 2.6 2 0 0 2 2 2 2 YjeF-related protein N-terminus 3HCDH_N PF02737.18 BAD85514.1 - 0.0025 17.7 0.3 0.39 10.6 0.0 2.4 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PrpR_N PF06506.11 BAD85514.1 - 0.032 13.8 0.1 1.1 8.8 0.0 2.7 3 0 0 3 3 3 0 Propionate catabolism activator TrkA_N PF02254.18 BAD85514.1 - 0.037 14.3 1.7 15 5.9 0.0 3.6 4 0 0 4 4 3 0 TrkA-N domain Lycopene_cycl PF05834.12 BAD85514.1 - 0.063 12.3 0.3 0.063 12.3 0.3 1.8 2 0 0 2 2 2 0 Lycopene cyclase protein Hydrolase_6 PF13344.6 BAD85514.1 - 0.1 12.7 0.0 0.66 10.1 0.0 2.4 2 1 0 2 2 1 0 Haloacid dehalogenase-like hydrolase Fer4_10 PF13237.6 BAD85514.1 - 0.28 11.3 5.7 0.57 10.3 5.7 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain ApbA PF02558.16 BAD85514.1 - 0.28 10.8 1.8 0.74 9.4 0.5 2.4 2 1 0 2 2 2 0 Ketopantoate reductase PanE/ApbA DHODB_Fe-S_bind PF10418.9 BAD85515.1 - 2.7e-10 39.9 3.4 4.1e-10 39.3 3.4 1.3 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Fer2_3 PF13085.6 BAD85515.1 - 0.13 12.3 0.2 0.23 11.5 0.2 1.4 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain TctB PF07331.11 BAD85516.1 - 0.0047 17.2 2.7 0.006 16.9 2.7 1.1 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctB family GCD14 PF08704.10 BAD85517.1 - 2.8e-28 99.3 0.0 1.4e-26 93.7 0.0 2.0 1 1 1 2 2 2 1 tRNA methyltransferase complex GCD14 subunit PCMT PF01135.19 BAD85517.1 - 3e-10 40.2 0.0 3.6e-10 39.9 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 BAD85517.1 - 3e-10 40.1 0.0 4e-10 39.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain GCD14_N PF14801.6 BAD85517.1 - 7.1e-09 35.4 0.0 2.3e-08 33.7 0.1 2.0 2 0 0 2 2 2 1 tRNA methyltransferase complex GCD14 subunit N-term Methyltransf_25 PF13649.6 BAD85517.1 - 2.8e-06 28.0 0.0 5.1e-06 27.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 BAD85517.1 - 3.7e-06 26.2 0.0 5.3e-06 25.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Ubie_methyltran PF01209.18 BAD85517.1 - 6.6e-06 25.6 0.0 1e-05 25.0 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_11 PF08241.12 BAD85517.1 - 0.00026 21.6 0.0 0.0006 20.4 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.16 BAD85517.1 - 0.00038 20.3 0.0 0.00061 19.6 0.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_18 PF12847.7 BAD85517.1 - 0.00065 19.7 0.0 0.00097 19.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 BAD85517.1 - 0.00068 19.2 0.0 0.0013 18.3 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_3 PF01596.17 BAD85517.1 - 0.00091 18.5 0.0 0.0013 17.9 0.0 1.3 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_16 PF10294.9 BAD85517.1 - 0.0012 18.6 0.0 0.002 17.9 0.0 1.3 1 0 0 1 1 1 1 Lysine methyltransferase PrmA PF06325.13 BAD85517.1 - 0.0016 17.9 0.0 0.0022 17.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_12 PF08242.12 BAD85517.1 - 0.0047 17.7 0.0 0.013 16.2 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 BAD85517.1 - 0.0078 15.5 0.0 0.012 14.9 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_24 PF13578.6 BAD85517.1 - 0.0085 17.1 0.0 0.018 16.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltr_RsmB-F PF01189.17 BAD85517.1 - 0.015 15.0 0.0 0.19 11.3 0.0 2.0 1 1 1 2 2 2 0 16S rRNA methyltransferase RsmB/F Methyltransf_32 PF13679.6 BAD85517.1 - 0.038 14.0 0.0 0.047 13.7 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain FtsJ PF01728.19 BAD85517.1 - 0.074 13.2 0.0 3.1 7.9 0.0 2.1 1 1 1 2 2 2 0 FtsJ-like methyltransferase Methyltransf_23 PF13489.6 BAD85517.1 - 0.076 12.8 0.0 0.16 11.8 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain DUF257 PF03192.13 BAD85518.1 - 3.6e-11 43.3 0.1 5.6e-11 42.6 0.1 1.3 1 1 0 1 1 1 1 Pyrococcus protein of unknown function, DUF257 SRP19 PF01922.17 BAD85519.1 - 3.9e-12 47.0 0.1 4.9e-12 46.6 0.1 1.2 1 0 0 1 1 1 1 SRP19 protein Abi_C PF14355.6 BAD85519.1 - 0.095 12.8 0.0 0.18 11.9 0.0 1.4 1 0 0 1 1 1 0 Abortive infection C-terminus AsnC_trans_reg PF01037.21 BAD85520.1 - 1.1e-16 60.6 0.3 1.2e-16 60.4 0.3 1.0 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain NapD PF03927.13 BAD85520.1 - 3.4e-06 27.0 1.7 4.7e-06 26.6 1.7 1.2 1 0 0 1 1 1 1 NapD protein ACT_4 PF13291.6 BAD85520.1 - 0.008 16.7 0.3 2.2 8.9 0.0 2.2 2 0 0 2 2 2 2 ACT domain GYD PF08734.11 BAD85520.1 - 0.05 13.5 0.1 0.061 13.3 0.1 1.3 1 0 0 1 1 1 0 GYD domain DEAD PF00270.29 BAD85521.1 - 1.9e-25 89.6 0.0 5.1e-25 88.3 0.0 1.7 2 0 0 2 2 2 1 DEAD/DEAH box helicase LAGLIDADG_3 PF14528.6 BAD85521.1 - 1.5e-18 66.8 5.3 6.9e-13 48.7 0.3 3.6 3 0 0 3 3 3 2 LAGLIDADG-like domain HHH_5 PF14520.6 BAD85521.1 - 2.4e-11 44.1 0.1 9.6e-11 42.1 0.1 2.1 1 0 0 1 1 1 1 Helix-hairpin-helix domain ResIII PF04851.15 BAD85521.1 - 5.2e-09 36.3 0.0 1.4e-07 31.7 0.0 2.4 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Hom_end PF05204.14 BAD85521.1 - 5.3e-07 29.8 0.0 0.0006 20.0 0.0 3.5 4 0 0 4 4 4 1 Homing endonuclease Helicase_C PF00271.31 BAD85521.1 - 6.2e-07 29.7 0.1 0.0031 17.9 0.1 3.8 3 1 0 3 3 3 2 Helicase conserved C-terminal domain DNA_pol_lambd_f PF10391.9 BAD85521.1 - 8e-07 28.8 0.0 5.5e-06 26.1 0.0 2.3 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda Intein_splicing PF14890.6 BAD85521.1 - 8.1e-07 29.1 0.0 2e-06 27.8 0.0 1.7 1 1 0 1 1 1 1 Intein splicing domain Hint_2 PF13403.6 BAD85521.1 - 4.3e-06 27.1 0.1 9.1e-06 26.0 0.1 1.5 1 0 0 1 1 1 1 Hint domain HHH_2 PF12826.7 BAD85521.1 - 9.9e-05 22.4 0.0 0.00029 20.9 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif Cdd1 PF11731.8 BAD85521.1 - 0.0001 22.4 0.2 0.00036 20.7 0.0 2.0 2 0 0 2 2 2 1 Pathogenicity locus Hint PF01079.20 BAD85521.1 - 0.00032 20.3 0.0 0.00058 19.4 0.0 1.4 1 0 0 1 1 1 1 Hint module HHH PF00633.23 BAD85521.1 - 0.014 15.2 0.0 1.1 9.2 0.1 2.8 2 0 0 2 2 2 0 Helix-hairpin-helix motif RNA_pol_A_CTD PF03118.15 BAD85521.1 - 0.041 13.6 0.0 0.39 10.5 0.0 2.6 2 1 0 2 2 2 0 Bacterial RNA polymerase, alpha chain C terminal domain AAA_17 PF13207.6 BAD85523.1 - 4.6e-19 69.2 0.1 6.5e-19 68.7 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 BAD85523.1 - 4.7e-15 56.3 0.0 6.6e-15 55.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 BAD85523.1 - 3.9e-10 40.1 0.0 5.4e-10 39.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.6 BAD85523.1 - 0.00065 20.0 0.6 0.0025 18.1 0.0 2.1 2 1 1 3 3 3 1 AAA domain AAA_16 PF13191.6 BAD85523.1 - 0.0018 18.7 0.4 0.0036 17.7 0.3 1.9 1 1 0 1 1 1 1 AAA ATPase domain KTI12 PF08433.10 BAD85523.1 - 0.0032 17.0 0.1 0.0032 17.0 0.1 1.8 2 0 0 2 2 2 1 Chromatin associated protein KTI12 NTPase_1 PF03266.15 BAD85523.1 - 0.0048 16.8 2.6 0.67 9.9 2.6 2.5 1 1 0 1 1 1 1 NTPase ATP_bind_2 PF03668.15 BAD85523.1 - 0.013 14.9 0.1 0.016 14.5 0.1 1.2 1 0 0 1 1 1 0 P-loop ATPase protein family ADK PF00406.22 BAD85523.1 - 0.016 15.3 0.0 0.019 15.1 0.0 1.2 1 0 0 1 1 1 0 Adenylate kinase Zeta_toxin PF06414.12 BAD85523.1 - 0.018 14.3 0.1 0.034 13.4 0.1 1.7 1 1 0 1 1 1 0 Zeta toxin APS_kinase PF01583.20 BAD85523.1 - 0.018 14.9 0.1 0.067 13.1 0.0 1.9 1 1 1 2 2 2 0 Adenylylsulphate kinase Viral_helicase1 PF01443.18 BAD85523.1 - 0.025 14.3 0.0 0.029 14.1 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_22 PF13401.6 BAD85523.1 - 0.028 14.7 0.3 0.087 13.1 0.3 1.8 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.14 BAD85523.1 - 0.039 13.9 0.4 0.1 12.6 0.4 1.7 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) CPT PF07931.12 BAD85523.1 - 0.053 13.4 0.4 0.17 11.7 0.4 1.7 1 1 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein NB-ARC PF00931.22 BAD85523.1 - 0.066 12.4 0.3 0.13 11.4 0.3 1.5 1 1 0 1 1 1 0 NB-ARC domain AAA_14 PF13173.6 BAD85523.1 - 0.071 13.1 0.0 0.19 11.8 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 BAD85523.1 - 0.086 12.6 0.9 0.28 10.9 0.9 1.8 1 1 0 1 1 1 0 AAA domain RNA_binding PF01877.17 BAD85524.1 - 3.6e-18 66.0 0.0 4.6e-18 65.6 0.0 1.1 1 0 0 1 1 1 1 RNA binding ACOX PF01756.19 BAD85524.1 - 0.021 14.4 0.0 0.062 12.9 0.0 1.6 1 1 1 2 2 2 0 Acyl-CoA oxidase ABC2_membrane_3 PF12698.7 BAD85525.1 - 2.5e-34 119.0 14.2 3e-34 118.7 14.2 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 BAD85525.1 - 1.1e-23 84.0 18.6 1.4e-23 83.6 18.6 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 BAD85525.1 - 5.4e-19 68.4 15.3 3.8e-16 59.1 13.6 2.4 2 0 0 2 2 2 2 ABC-2 type transporter ABC2_membrane_5 PF13346.6 BAD85525.1 - 3.2e-08 33.4 8.6 3.2e-08 33.4 8.6 2.7 2 1 1 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 BAD85525.1 - 2.3e-06 27.7 12.8 2.3e-06 27.7 12.8 3.2 2 1 1 3 3 3 1 ABC-2 family transporter protein DUF1381 PF07129.11 BAD85525.1 - 0.17 11.7 0.2 1.9 8.4 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1381) ABC_tran PF00005.27 BAD85526.1 - 6.7e-29 101.2 0.0 9e-29 100.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 BAD85526.1 - 1.3e-11 44.9 0.1 7.3e-05 22.7 0.2 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 BAD85526.1 - 0.00021 20.9 0.1 0.0006 19.5 0.1 1.7 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_15 PF13175.6 BAD85526.1 - 0.0018 18.0 0.0 0.003 17.3 0.0 1.4 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 BAD85526.1 - 0.0027 18.3 0.9 0.0041 17.7 0.9 1.4 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 BAD85526.1 - 0.0033 16.9 0.1 1.7 8.0 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain Rad17 PF03215.15 BAD85526.1 - 0.0082 16.1 0.0 0.014 15.3 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_22 PF13401.6 BAD85526.1 - 0.019 15.2 0.0 0.035 14.4 0.0 1.5 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.22 BAD85526.1 - 0.023 14.3 0.0 0.093 12.4 0.0 1.8 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_30 PF13604.6 BAD85526.1 - 0.024 14.3 0.4 0.041 13.6 0.4 1.6 1 1 0 1 1 1 0 AAA domain AAA_27 PF13514.6 BAD85526.1 - 0.031 13.9 0.1 0.054 13.1 0.1 1.3 1 0 0 1 1 1 0 AAA domain MeaB PF03308.16 BAD85526.1 - 0.033 13.2 0.3 0.085 11.8 0.1 1.7 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_28 PF13521.6 BAD85526.1 - 0.049 13.9 0.0 0.082 13.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain Thymidylate_kin PF02223.17 BAD85526.1 - 0.07 12.8 0.0 0.1 12.3 0.0 1.4 1 0 0 1 1 1 0 Thymidylate kinase AAA_18 PF13238.6 BAD85526.1 - 0.1 13.1 0.0 0.32 11.5 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 BAD85526.1 - 0.18 12.2 0.0 0.26 11.7 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain HTH_3 PF01381.22 BAD85528.1 - 3.8e-21 74.9 0.2 4.2e-21 74.8 0.2 1.0 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 BAD85528.1 - 1.8e-17 63.1 0.5 2.1e-17 62.9 0.5 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 BAD85528.1 - 2.6e-13 50.1 0.0 2.9e-13 50.0 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 BAD85528.1 - 1.5e-09 38.2 0.0 1.6e-09 38.0 0.0 1.0 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_25 PF13413.6 BAD85528.1 - 1.6e-08 34.3 0.7 2.5e-08 33.6 0.7 1.5 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 BAD85528.1 - 3e-05 23.9 0.3 4.3e-05 23.4 0.3 1.2 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.6 BAD85528.1 - 3.3e-05 23.3 0.1 5.1e-05 22.8 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Sigma70_r4 PF04545.16 BAD85528.1 - 3.3e-05 23.3 0.8 6.1e-05 22.5 0.8 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.6 BAD85528.1 - 0.00022 20.9 0.1 0.0005 19.8 0.1 1.6 2 0 0 2 2 2 1 Homeodomain-like domain HTH_37 PF13744.6 BAD85528.1 - 0.00022 21.1 0.0 0.00024 21.0 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 BAD85528.1 - 0.00038 20.4 0.0 0.0011 18.9 0.1 1.7 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain MarR PF01047.22 BAD85528.1 - 0.0013 18.7 0.0 0.0059 16.5 0.0 1.8 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.7 BAD85528.1 - 0.0023 17.8 0.1 0.0038 17.1 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_38 PF13936.6 BAD85528.1 - 0.0037 17.0 0.2 0.0094 15.7 0.2 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain TnsD PF15978.5 BAD85528.1 - 0.0037 16.3 0.1 0.0045 16.0 0.1 1.1 1 0 0 1 1 1 1 Tn7-like transposition protein D Crp PF00325.20 BAD85528.1 - 0.0043 16.7 0.1 0.13 11.9 0.1 2.3 2 0 0 2 2 2 1 Bacterial regulatory proteins, crp family YdaS_antitoxin PF15943.5 BAD85528.1 - 0.0085 15.9 0.0 0.011 15.6 0.0 1.2 1 0 0 1 1 1 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT Sigma70_r4_2 PF08281.12 BAD85528.1 - 0.01 15.5 0.0 0.044 13.5 0.0 1.8 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_7 PF02796.15 BAD85528.1 - 0.011 15.8 0.2 0.023 14.7 0.1 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase GntR PF00392.21 BAD85528.1 - 0.017 14.8 0.2 0.033 13.8 0.2 1.5 1 1 1 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_AsnC-type PF13404.6 BAD85528.1 - 0.031 14.1 0.3 0.045 13.6 0.3 1.3 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_20 PF12840.7 BAD85528.1 - 0.032 14.3 0.1 0.045 13.8 0.1 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.6 BAD85528.1 - 0.041 13.9 0.0 0.067 13.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix HTH_17 PF12728.7 BAD85528.1 - 0.056 13.6 0.1 0.084 13.1 0.1 1.4 1 1 0 1 1 1 0 Helix-turn-helix domain CENP-B_N PF04218.13 BAD85528.1 - 0.059 13.0 0.0 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 CENP-B N-terminal DNA-binding domain Suv3_N PF18114.1 BAD85528.1 - 0.061 13.4 0.0 0.066 13.3 0.0 1.0 1 0 0 1 1 1 0 Suv3 helical N-terminal domain HTH_28 PF13518.6 BAD85528.1 - 0.061 13.5 0.1 0.14 12.3 0.0 1.5 2 0 0 2 2 1 0 Helix-turn-helix domain HTH_10 PF04967.12 BAD85528.1 - 0.067 13.0 0.1 0.16 11.8 0.0 1.6 1 1 1 2 2 2 0 HTH DNA binding domain MerR PF00376.23 BAD85528.1 - 0.11 12.2 0.0 0.57 10.0 0.0 2.0 2 0 0 2 2 2 0 MerR family regulatory protein DUF1323 PF07037.11 BAD85528.1 - 0.13 12.7 0.0 0.17 12.3 0.0 1.2 1 0 0 1 1 1 0 Putative transcription regulator (DUF1323) DUF2178 PF09946.9 BAD85529.1 - 1.5e-07 31.5 0.0 1.8e-07 31.2 0.0 1.1 1 0 0 1 1 1 1 Predicted membrane protein (DUF2178) Phage_holin_2_3 PF16080.5 BAD85529.1 - 0.0045 16.7 1.9 0.054 13.3 0.0 2.5 2 0 0 2 2 2 1 Bacteriophage holin family HP1 ATP-synt_I PF03899.15 BAD85529.1 - 0.0062 16.9 0.1 0.0088 16.4 0.1 1.2 1 0 0 1 1 1 1 ATP synthase I chain DUF2368 PF10166.9 BAD85529.1 - 0.0089 15.6 0.0 0.01 15.5 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised conserved protein (DUF2368) LtrA PF06772.11 BAD85529.1 - 0.011 14.9 0.0 0.012 14.9 0.0 1.1 1 0 0 1 1 1 0 Bacterial low temperature requirement A protein (LtrA) PMT PF02366.18 BAD85529.1 - 0.028 14.0 0.0 0.034 13.7 0.0 1.2 1 0 0 1 1 1 0 Dolichyl-phosphate-mannose-protein mannosyltransferase Phage_holin_2_1 PF04971.12 BAD85529.1 - 1.3 9.0 10.9 0.083 12.9 1.7 2.8 2 1 1 3 3 3 0 Bacteriophage P21 holin S DUF2178 PF09946.9 BAD85530.1 - 8e-13 48.5 2.8 1.1e-12 48.0 2.8 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2178) DUF4337 PF14235.6 BAD85530.1 - 0.086 13.0 0.1 0.086 13.0 0.1 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4337) DUF4282 PF14110.6 BAD85530.1 - 0.094 13.5 7.4 1.4 9.7 2.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4282) YrhC PF14143.6 BAD85530.1 - 0.27 11.3 2.0 0.59 10.3 0.2 2.4 2 1 1 3 3 3 0 YrhC-like protein DUF202 PF02656.15 BAD85530.1 - 3.6 8.1 8.8 12 6.4 0.5 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF202) TctB PF07331.11 BAD85530.1 - 4.5 7.5 9.9 0.65 10.3 1.2 2.1 2 0 0 2 2 2 0 Tripartite tricarboxylate transporter TctB family Phage_integr_3 PF16795.5 BAD85531.1 - 3.9e-14 52.9 0.3 9.7e-14 51.6 0.3 1.7 1 1 0 1 1 1 1 Archaeal phage integrase DNTTIP1_dimer PF18192.1 BAD85531.1 - 0.05 14.0 0.1 5.4 7.4 0.0 2.5 2 0 0 2 2 2 0 DNTTIP1 dimerisation domain PIN_3 PF13470.6 BAD85532.1 - 7.7e-15 55.7 0.0 1.1e-14 55.2 0.0 1.2 1 0 0 1 1 1 1 PIN domain Baculo_p47 PF05112.12 BAD85532.1 - 0.0026 17.4 0.3 0.0033 17.1 0.3 1.1 1 0 0 1 1 1 1 Baculovirus P47 protein PIN PF01850.21 BAD85532.1 - 0.0026 18.2 1.0 0.024 15.1 1.0 2.1 1 1 0 1 1 1 1 PIN domain VRR_NUC PF08774.11 BAD85533.1 - 0.17 12.0 0.6 0.31 11.1 0.0 1.7 2 0 0 2 2 2 0 VRR-NUC domain JAB PF01398.21 BAD85534.1 - 0.11 12.4 0.0 0.22 11.5 0.0 1.4 1 0 0 1 1 1 0 JAB1/Mov34/MPN/PAD-1 ubiquitin protease YcbB PF08664.10 BAD85538.1 - 0.0063 16.6 0.3 0.0075 16.3 0.3 1.2 1 0 0 1 1 1 1 YcbB domain MetOD2 PF18548.1 BAD85539.1 - 3e-05 24.0 0.1 3.2e-05 24.0 0.1 1.1 1 0 0 1 1 1 1 Metanogen output domain 2 Nsp1_C PF05064.13 BAD85539.1 - 0.0088 15.8 0.0 0.0096 15.7 0.0 1.0 1 0 0 1 1 1 1 Nsp1-like C-terminal region Uds1 PF15456.6 BAD85539.1 - 0.014 15.5 0.1 0.02 15.0 0.1 1.3 1 0 0 1 1 1 0 Up-regulated During Septation Matrilin_ccoil PF10393.9 BAD85539.1 - 0.021 14.7 0.2 0.032 14.1 0.2 1.4 1 0 0 1 1 1 0 Trimeric coiled-coil oligomerisation domain of matrilin Sugarporin_N PF11471.8 BAD85539.1 - 0.028 14.4 0.0 0.041 13.9 0.0 1.4 1 1 0 1 1 1 0 Maltoporin periplasmic N-terminal extension XhlA PF10779.9 BAD85539.1 - 0.031 14.5 0.4 0.031 14.5 0.4 2.3 1 1 0 2 2 2 0 Haemolysin XhlA NPV_P10 PF05531.12 BAD85539.1 - 0.048 14.1 0.0 0.053 14.0 0.0 1.2 1 0 0 1 1 1 0 Nucleopolyhedrovirus P10 protein Phasin PF05597.11 BAD85540.1 - 0.075 13.0 0.2 0.25 11.4 0.0 1.8 2 0 0 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) Tautomerase_2 PF14552.6 BAD85543.1 - 0.0052 16.8 0.0 0.0058 16.7 0.0 1.1 1 0 0 1 1 1 1 Tautomerase enzyme E3_binding PF02817.17 BAD85543.1 - 0.094 13.1 0.0 0.12 12.7 0.0 1.2 1 0 0 1 1 1 0 e3 binding domain DuffyBP_N PF12377.8 BAD85544.1 - 0.029 14.8 0.0 0.038 14.4 0.0 1.1 1 0 0 1 1 1 0 Duffy binding protein N terminal DUF485 PF04341.12 BAD85544.1 - 1.3 9.0 6.5 2 8.4 6.5 1.3 1 1 0 1 1 1 0 Protein of unknown function, DUF485 DUF87 PF01935.17 BAD85545.1 - 2.2e-05 24.7 0.0 4.5e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 Helicase HerA, central domain AAA_10 PF12846.7 BAD85545.1 - 5.1e-05 22.4 0.2 0.014 14.4 0.1 2.1 2 0 0 2 2 2 2 AAA-like domain Zot PF05707.12 BAD85545.1 - 6.6e-05 22.6 0.0 0.21 11.2 0.0 2.2 2 0 0 2 2 2 2 Zonular occludens toxin (Zot) AAA_22 PF13401.6 BAD85545.1 - 0.00021 21.6 0.0 0.00061 20.1 0.0 1.7 1 1 0 1 1 1 1 AAA domain TrwB_AAD_bind PF10412.9 BAD85545.1 - 0.00043 19.3 0.0 0.0007 18.6 0.0 1.2 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain DUF2791 PF10923.8 BAD85545.1 - 0.0021 17.0 0.0 0.0029 16.5 0.0 1.1 1 0 0 1 1 1 1 P-loop Domain of unknown function (DUF2791) CLP1_P PF16575.5 BAD85545.1 - 0.0034 17.2 0.0 0.019 14.8 0.0 2.1 1 1 1 2 2 2 1 mRNA cleavage and polyadenylation factor CLP1 P-loop ResIII PF04851.15 BAD85545.1 - 0.013 15.6 0.0 3.9 7.4 0.0 2.2 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit Sigma54_activat PF00158.26 BAD85545.1 - 0.039 13.6 0.0 0.066 12.9 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_16 PF13191.6 BAD85545.1 - 0.044 14.2 0.1 0.29 11.5 0.0 2.2 2 1 0 2 2 2 0 AAA ATPase domain AAA PF00004.29 BAD85545.1 - 0.049 14.1 0.0 0.23 11.9 0.0 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Torsin PF06309.11 BAD85545.1 - 0.051 13.7 0.0 0.16 12.1 0.0 1.8 2 0 0 2 2 2 0 Torsin ATPase PF06745.13 BAD85545.1 - 0.071 12.4 0.0 0.11 11.8 0.0 1.3 1 0 0 1 1 1 0 KaiC CDKN3 PF05706.12 BAD85545.1 - 0.13 11.9 0.0 0.2 11.3 0.0 1.2 1 0 0 1 1 1 0 Cyclin-dependent kinase inhibitor 3 (CDKN3) AAA_23 PF13476.6 BAD85545.1 - 0.23 11.9 0.1 6.8 7.1 0.1 2.0 2 0 0 2 2 2 0 AAA domain V-SNARE PF05008.15 BAD85546.1 - 0.09 13.2 2.6 0.092 13.1 0.4 2.0 2 0 0 2 2 2 0 Vesicle transport v-SNARE protein N-terminus TFIIS_C PF01096.18 BAD85549.1 - 0.034 14.0 1.2 0.49 10.3 0.1 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Zn-ribbon_8 PF09723.10 BAD85549.1 - 0.049 13.8 1.0 0.1 12.7 1.0 1.5 1 0 0 1 1 1 0 Zinc ribbon domain zf-C3HC4_3 PF13920.6 BAD85549.1 - 0.29 11.0 3.0 0.46 10.4 3.0 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-RRN7 PF11781.8 BAD85549.1 - 0.88 9.3 5.9 2.3 8.0 0.1 2.3 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 MCM PF00493.23 BAD85550.1 - 6.2e-69 231.5 0.0 9.9e-69 230.8 0.0 1.3 1 0 0 1 1 1 1 MCM P-loop domain MCM_lid PF17855.1 BAD85550.1 - 1.6e-18 66.9 0.4 5e-18 65.3 0.1 2.0 2 0 0 2 2 2 1 MCM AAA-lid domain MCM_OB PF17207.3 BAD85550.1 - 2.1e-18 66.4 0.0 5.4e-18 65.0 0.0 1.6 2 0 0 2 2 1 1 MCM OB domain AAA_5 PF07728.14 BAD85550.1 - 7e-09 35.8 0.0 1.6e-08 34.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.21 BAD85550.1 - 5.5e-08 32.4 0.1 0.00042 19.8 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI MCM_N PF14551.6 BAD85550.1 - 3.2e-05 24.4 0.1 0.00012 22.7 0.1 2.0 1 0 0 1 1 1 1 MCM N-terminal domain AAA_16 PF13191.6 BAD85550.1 - 0.004 17.5 1.3 0.076 13.4 0.2 3.1 3 0 0 3 3 3 1 AAA ATPase domain TIP49_C PF17856.1 BAD85550.1 - 0.0054 16.8 0.0 0.015 15.4 0.0 1.7 1 0 0 1 1 1 1 TIP49 AAA-lid domain Phage_CP76 PF06892.11 BAD85550.1 - 0.0059 16.2 0.0 0.015 14.8 0.0 1.6 1 0 0 1 1 1 1 Phage regulatory protein CII (CP76) RuvB_N PF05496.12 BAD85550.1 - 0.0099 15.6 0.2 0.13 12.0 0.2 2.3 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain HypA PF01155.19 BAD85550.1 - 0.017 15.2 0.1 0.049 13.7 0.1 1.7 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA UBA_3 PF09288.10 BAD85550.1 - 0.017 14.9 0.1 0.076 12.8 0.0 2.2 2 0 0 2 2 1 0 Fungal ubiquitin-associated domain Sigma54_activat PF00158.26 BAD85550.1 - 0.025 14.3 0.4 0.4 10.4 0.1 2.4 2 0 0 2 2 2 0 Sigma-54 interaction domain Zn-ribbon_8 PF09723.10 BAD85550.1 - 0.03 14.4 0.2 0.072 13.2 0.2 1.6 1 0 0 1 1 1 0 Zinc ribbon domain AAA PF00004.29 BAD85550.1 - 0.031 14.7 0.4 0.25 11.7 0.4 2.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_3 PF07726.11 BAD85550.1 - 0.056 13.3 0.1 0.32 10.9 0.1 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 BAD85550.1 - 0.06 13.6 1.1 0.78 10.0 0.2 3.1 2 1 0 2 2 2 0 AAA domain Zeta_toxin PF06414.12 BAD85550.1 - 0.15 11.3 0.4 0.79 9.0 0.1 2.3 2 0 0 2 2 2 0 Zeta toxin Mg_chelatase_C PF13335.6 BAD85550.1 - 0.17 12.6 0.2 9.6 6.9 0.0 3.3 3 0 0 3 3 3 0 Magnesium chelatase, subunit ChlI C-terminal DZR PF12773.7 BAD85550.1 - 0.23 11.5 0.3 0.42 10.7 0.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon DUF202 PF02656.15 BAD85551.1 - 0.053 14.0 1.1 0.079 13.4 1.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF202) SecD_SecF PF02355.16 BAD85551.1 - 0.12 11.7 0.7 0.19 11.1 0.7 1.3 1 1 0 1 1 1 0 Protein export membrane protein Ribosomal_L12_N PF16320.5 BAD85553.1 - 0.12 12.1 0.0 0.22 11.3 0.0 1.4 1 0 0 1 1 1 0 Ribosomal protein L7/L12 dimerisation domain DUF3006 PF11213.8 BAD85555.1 - 0.034 14.4 0.9 0.049 13.9 0.2 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3006) DUF1652 PF07865.11 BAD85556.1 - 0.14 12.0 0.3 0.27 11.1 0.1 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1652) DUF3826 PF12875.7 BAD85558.1 - 0.017 15.3 0.7 0.11 12.7 0.2 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3826) NUC130_3NT PF08158.12 BAD85558.1 - 0.23 11.8 0.5 0.57 10.5 0.2 1.8 2 0 0 2 2 2 0 NUC130/3NT domain Nbs1_C PF08599.10 BAD85558.1 - 0.26 11.4 0.3 0.26 11.4 0.3 1.6 2 0 0 2 2 2 0 DNA damage repair protein Nbs1 FliT PF05400.13 BAD85558.1 - 0.59 11.0 4.9 0.63 10.9 0.7 2.1 2 0 0 2 2 2 0 Flagellar protein FliT Rx_N PF18052.1 BAD85558.1 - 0.59 10.4 4.2 11 6.4 0.2 2.2 2 0 0 2 2 2 0 Rx N-terminal domain MazE_antitoxin PF04014.18 BAD85561.1 - 5.6e-06 26.1 0.4 7.5e-06 25.8 0.4 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin L27 PF02828.16 BAD85562.1 - 0.025 14.3 0.1 0.056 13.2 0.1 1.6 2 0 0 2 2 2 0 L27 domain SUIM_assoc PF16619.5 BAD85562.1 - 0.3 11.2 1.2 0.37 10.9 1.2 1.2 1 0 0 1 1 1 0 Unstructured region C-term to UIM in Ataxin3 DASH_Duo1 PF08651.10 BAD85563.1 - 0.0014 18.4 1.0 0.0014 18.4 1.0 2.0 2 0 0 2 2 2 1 DASH complex subunit Duo1 DUF16 PF01519.16 BAD85563.1 - 0.0051 17.3 3.9 0.0058 17.1 3.0 1.4 1 1 0 1 1 1 1 Protein of unknown function DUF16 TMPIT PF07851.13 BAD85563.1 - 0.0065 15.7 0.6 0.0076 15.5 0.6 1.1 1 0 0 1 1 1 1 TMPIT-like protein Laminin_II PF06009.12 BAD85563.1 - 0.0073 16.3 1.6 0.011 15.8 1.6 1.2 1 0 0 1 1 1 1 Laminin Domain II Fmp27_WPPW PF10359.9 BAD85563.1 - 0.0084 15.0 1.3 0.0095 14.8 1.3 1.1 1 0 0 1 1 1 1 RNA pol II promoter Fmp27 protein domain Uds1 PF15456.6 BAD85563.1 - 0.0088 16.2 0.3 0.066 13.4 0.0 1.9 2 0 0 2 2 2 1 Up-regulated During Septation DUF1664 PF07889.12 BAD85563.1 - 0.014 15.5 2.4 0.018 15.1 1.6 1.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) BshC PF10079.9 BAD85563.1 - 0.015 14.1 0.4 0.015 14.1 0.4 1.0 1 0 0 1 1 1 0 Bacillithiol biosynthesis BshC Osmo_CC PF08946.10 BAD85563.1 - 0.016 15.4 0.4 0.077 13.3 0.1 2.1 2 0 0 2 2 2 0 Osmosensory transporter coiled coil DUF4200 PF13863.6 BAD85563.1 - 0.016 15.6 1.9 0.016 15.6 1.9 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) CREPT PF16566.5 BAD85563.1 - 0.019 15.2 0.0 0.029 14.6 0.0 1.2 1 0 0 1 1 1 0 Cell-cycle alteration and expression-elevated protein in tumour DUF2730 PF10805.8 BAD85563.1 - 0.025 14.7 3.0 0.14 12.3 3.0 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF2730) MscS_porin PF12795.7 BAD85563.1 - 0.028 14.0 1.1 0.034 13.7 1.1 1.1 1 0 0 1 1 1 0 Mechanosensitive ion channel porin domain DivIC PF04977.15 BAD85563.1 - 0.036 13.8 2.5 0.049 13.4 0.6 1.9 2 0 0 2 2 2 0 Septum formation initiator KxDL PF10241.9 BAD85563.1 - 0.065 13.5 1.0 0.065 13.5 1.0 1.5 2 0 0 2 2 1 0 Uncharacterized conserved protein Hemagglutinin PF00509.18 BAD85563.1 - 0.07 11.5 2.2 0.077 11.4 2.2 1.1 1 0 0 1 1 1 0 Haemagglutinin DUF1043 PF06295.12 BAD85563.1 - 0.077 13.0 2.6 0.29 11.1 2.6 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF1043) TRPM_tetra PF16519.5 BAD85563.1 - 0.12 12.5 3.5 0.29 11.3 3.4 1.8 1 1 0 1 1 1 0 Tetramerisation domain of TRPM ABC_tran_CTD PF16326.5 BAD85563.1 - 0.13 12.6 4.3 1.1 9.6 4.1 2.2 1 1 0 1 1 1 0 ABC transporter C-terminal domain FlaC_arch PF05377.11 BAD85563.1 - 0.17 12.3 7.9 0.97 9.9 1.7 2.7 3 0 0 3 3 3 0 Flagella accessory protein C (FlaC) XhlA PF10779.9 BAD85563.1 - 0.21 11.8 18.3 0.36 11.1 3.1 3.9 1 1 1 3 3 3 0 Haemolysin XhlA Fib_alpha PF08702.10 BAD85563.1 - 0.26 11.4 4.3 0.42 10.8 4.3 1.6 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family Fzo_mitofusin PF04799.13 BAD85563.1 - 0.61 9.6 3.1 0.49 9.9 1.5 1.7 1 1 1 2 2 2 0 fzo-like conserved region EpuA PF11772.8 BAD85564.1 - 0.093 12.4 0.6 0.093 12.4 0.6 1.9 2 0 0 2 2 2 0 DNA-directed RNA polymerase subunit beta Na_Ca_ex_C PF16494.5 BAD85565.1 - 0.13 12.8 0.1 0.15 12.5 0.1 1.1 1 0 0 1 1 1 0 C-terminal extension of sodium/calcium exchanger domain CcdA PF07362.12 BAD85567.1 - 0.079 13.4 0.0 0.17 12.3 0.0 1.5 2 0 0 2 2 2 0 Post-segregation antitoxin CcdA GDC-P PF02347.16 BAD85568.1 - 2.3e-13 49.8 0.0 3.1e-10 39.5 0.0 2.1 2 0 0 2 2 2 2 Glycine cleavage system P-protein Aminotran_5 PF00266.19 BAD85568.1 - 7e-09 35.1 0.0 2.2e-08 33.5 0.0 1.7 1 1 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 BAD85568.1 - 4.2e-05 23.0 0.0 6.2e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.21 BAD85568.1 - 0.00014 21.2 0.0 0.00025 20.3 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II Pyridoxal_deC PF00282.19 BAD85568.1 - 0.00023 20.0 0.0 0.21 10.2 0.0 2.1 2 0 0 2 2 2 2 Pyridoxal-dependent decarboxylase conserved domain HTH_13 PF11972.8 BAD85568.1 - 0.15 12.1 0.0 0.99 9.5 0.0 2.3 2 0 0 2 2 2 0 HTH DNA binding domain GDC-P PF02347.16 BAD85569.1 - 4.4e-123 411.3 0.0 5.5e-123 411.0 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage system P-protein Aminotran_5 PF00266.19 BAD85569.1 - 0.012 14.6 0.0 0.018 14.0 0.0 1.4 1 1 0 1 1 1 0 Aminotransferase class-V DUF3189 PF11385.8 BAD85569.1 - 0.013 15.4 0.0 0.64 9.9 0.0 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF3189) Cys_Met_Meta_PP PF01053.20 BAD85569.1 - 0.016 13.8 0.0 0.024 13.2 0.0 1.2 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Zn_dep_PLPC PF00882.18 BAD85570.1 - 3.9e-06 27.0 0.6 3.9e-06 27.0 0.6 1.7 1 1 0 1 1 1 1 Zinc dependent phospholipase C T3SS_ATPase_C PF18269.1 BAD85570.1 - 0.078 12.8 0.4 0.25 11.2 0.1 1.9 2 0 0 2 2 2 0 T3SS EscN ATPase C-terminal domain DOMON PF03351.17 BAD85571.1 - 3e-28 98.5 0.0 5.3e-28 97.7 0.0 1.4 1 0 0 1 1 1 1 DOMON domain CDH-cyt PF16010.5 BAD85571.1 - 0.036 13.8 0.0 0.063 13.0 0.0 1.4 1 0 0 1 1 1 0 Cytochrome domain of cellobiose dehydrogenase HAD_2 PF13419.6 BAD85572.1 - 2e-12 47.5 0.0 3.4e-12 46.8 0.0 1.3 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase HAD PF12710.7 BAD85572.1 - 1.2e-05 25.8 0.2 1.7e-05 25.3 0.2 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 BAD85572.1 - 0.0002 21.7 0.0 0.0055 17.0 0.0 2.2 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 BAD85572.1 - 0.0048 17.0 0.0 1.3 9.1 0.0 2.3 2 0 0 2 2 2 2 Haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 BAD85572.1 - 0.0048 16.7 0.0 0.64 9.7 0.0 2.7 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase NT5C PF06941.12 BAD85572.1 - 0.041 13.8 0.0 0.35 10.7 0.0 2.1 1 1 0 1 1 1 0 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) Metallophos PF00149.28 BAD85575.1 - 1.6e-08 35.3 0.4 4.5e-08 33.9 0.1 1.6 1 1 1 2 2 2 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 BAD85575.1 - 0.00035 20.8 0.0 0.00053 20.2 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain PrsW-protease PF13367.6 BAD85576.1 - 1.1e-30 106.6 18.9 1.2e-30 106.5 18.3 1.4 1 1 0 1 1 1 1 PrsW family intramembrane metalloprotease YhfC PF10086.9 BAD85576.1 - 0.00017 21.0 7.3 0.00052 19.4 2.7 2.5 2 0 0 2 2 2 2 YhfC intramembrane metalloprotease KRTAP PF11759.8 BAD85576.1 - 0.48 11.0 2.7 0.89 10.1 2.7 1.4 1 0 0 1 1 1 0 Keratin-associated matrix Popeye PF04831.13 BAD85576.1 - 0.48 10.6 4.2 0.88 9.7 3.8 1.7 1 1 0 1 1 1 0 Popeye protein conserved region Rnk_N PF14760.6 BAD85577.1 - 0.006 17.0 0.3 0.0095 16.4 0.3 1.3 1 0 0 1 1 1 1 Rnk N-terminus HD_2 PF12917.7 BAD85577.1 - 0.04 13.7 0.3 0.043 13.6 0.3 1.0 1 0 0 1 1 1 0 HD containing hydrolase-like enzyme Sda PF08970.10 BAD85577.1 - 0.046 13.5 0.3 0.15 11.8 0.1 1.8 2 0 0 2 2 2 0 Sporulation inhibitor A Mis14 PF08641.12 BAD85577.1 - 0.16 12.3 2.2 1.8 8.9 0.2 2.0 1 1 1 2 2 2 0 Kinetochore protein Mis14 like TetR_C_29 PF17938.1 BAD85577.1 - 0.17 12.0 0.0 0.19 11.8 0.0 1.1 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain PepSY_like PF11396.8 BAD85579.1 - 0.12 12.9 1.6 2.8 8.6 0.1 2.7 2 1 0 2 2 2 0 Putative beta-lactamase-inhibitor-like, PepSY-like DUF1667 PF07892.11 BAD85580.1 - 2e-26 91.9 0.7 2e-26 91.9 0.7 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF1667) Molybdop_Fe4S4 PF04879.16 BAD85580.1 - 0.00064 19.7 3.3 0.0017 18.3 3.3 1.8 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Pyr_redox_2 PF07992.14 BAD85581.1 - 2.1e-30 106.0 2.1 5.5e-30 104.6 2.0 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 BAD85581.1 - 5.6e-15 55.7 3.2 6.4e-05 23.4 0.4 3.7 3 0 0 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 BAD85581.1 - 2e-13 50.3 0.3 1.9e-06 27.3 0.0 2.3 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 BAD85581.1 - 3e-12 46.7 4.6 6e-11 42.3 0.4 2.7 2 2 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 BAD85581.1 - 2.6e-10 40.4 0.1 6.5e-07 29.5 0.0 2.5 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 BAD85581.1 - 1.1e-09 37.9 10.7 2.5e-07 30.1 1.0 3.8 3 1 2 5 5 5 3 FAD binding domain HI0933_like PF03486.14 BAD85581.1 - 3.5e-09 35.9 4.0 1.5e-07 30.5 0.3 3.2 3 0 0 3 3 3 1 HI0933-like protein DAO PF01266.24 BAD85581.1 - 4.1e-09 36.5 7.6 0.0018 17.9 0.3 4.0 3 1 1 4 4 4 2 FAD dependent oxidoreductase Lycopene_cycl PF05834.12 BAD85581.1 - 1.6e-07 30.7 5.3 0.0004 19.5 0.7 3.1 3 0 0 3 3 3 3 Lycopene cyclase protein GIDA PF01134.22 BAD85581.1 - 1e-06 28.1 1.1 4e-06 26.2 0.1 2.3 3 0 0 3 3 3 1 Glucose inhibited division protein A FAD_binding_3 PF01494.19 BAD85581.1 - 2.7e-06 26.9 1.8 0.0049 16.2 0.1 3.0 3 0 0 3 3 3 2 FAD binding domain Thi4 PF01946.17 BAD85581.1 - 1.1e-05 24.8 1.5 0.011 15.0 0.1 2.4 2 0 0 2 2 2 2 Thi4 family NAD_binding_7 PF13241.6 BAD85581.1 - 2.9e-05 24.4 0.4 0.014 15.9 0.2 2.9 2 0 0 2 2 2 1 Putative NAD(P)-binding AlaDh_PNT_C PF01262.21 BAD85581.1 - 7e-05 22.2 7.0 0.00011 21.6 0.2 2.4 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain 2-Hacid_dh_C PF02826.19 BAD85581.1 - 0.0011 18.3 0.8 0.48 9.8 0.2 2.4 2 0 0 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.21 BAD85581.1 - 0.012 15.3 1.1 0.045 13.5 0.1 2.3 2 1 0 2 2 2 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase UDPG_MGDP_dh_N PF03721.14 BAD85581.1 - 0.049 13.2 1.2 1.7 8.2 0.1 2.8 3 0 0 3 3 3 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AdoHcyase_NAD PF00670.21 BAD85581.1 - 0.072 13.2 0.6 0.46 10.5 0.1 2.1 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 3HCDH_N PF02737.18 BAD85581.1 - 0.18 11.6 3.3 4.5 7.1 0.3 2.4 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Trp_halogenase PF04820.14 BAD85581.1 - 0.22 10.3 2.0 0.31 9.9 0.1 1.9 2 0 0 2 2 2 0 Tryptophan halogenase DAO PF01266.24 BAD85582.1 - 3.7e-68 230.7 0.2 4.4e-68 230.4 0.2 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase Fer2_BFD PF04324.15 BAD85582.1 - 2.5e-16 59.8 0.4 6.6e-16 58.4 0.4 1.8 1 0 0 1 1 1 1 BFD-like [2Fe-2S] binding domain NAD_binding_8 PF13450.6 BAD85582.1 - 4.3e-08 33.3 0.0 8.2e-08 32.4 0.0 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 BAD85582.1 - 6.3e-08 32.2 0.5 0.0071 15.6 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 BAD85582.1 - 3.4e-05 24.3 3.9 0.012 16.1 0.1 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 BAD85582.1 - 8.2e-05 21.5 1.0 0.17 10.6 0.1 2.1 2 0 0 2 2 2 2 HI0933-like protein NAD_binding_9 PF13454.6 BAD85582.1 - 0.00037 20.5 1.4 0.013 15.4 0.1 2.4 2 0 0 2 2 2 1 FAD-NAD(P)-binding Thi4 PF01946.17 BAD85582.1 - 0.00063 19.0 0.8 0.0016 17.7 0.2 1.9 2 0 0 2 2 2 1 Thi4 family Pyr_redox_3 PF13738.6 BAD85582.1 - 0.0013 18.1 1.0 0.03 13.6 0.1 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 BAD85582.1 - 0.002 17.4 0.2 0.017 14.4 0.1 2.0 2 0 0 2 2 2 1 FAD binding domain FAD_binding_2 PF00890.24 BAD85582.1 - 0.0025 17.0 0.9 0.0093 15.1 0.9 1.8 1 1 0 1 1 1 1 FAD binding domain Trp_halogenase PF04820.14 BAD85582.1 - 0.0027 16.7 2.6 0.8 8.5 0.4 2.2 2 0 0 2 2 2 2 Tryptophan halogenase 3HCDH_N PF02737.18 BAD85582.1 - 0.012 15.5 0.1 0.025 14.5 0.1 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.18 BAD85582.1 - 0.059 13.6 0.1 0.17 12.1 0.1 1.8 1 0 0 1 1 1 0 TrkA-N domain Lycopene_cycl PF05834.12 BAD85582.1 - 0.069 12.2 3.0 0.081 12.0 0.1 2.3 3 0 0 3 3 3 0 Lycopene cyclase protein FMO-like PF00743.19 BAD85582.1 - 0.17 10.2 0.0 0.25 9.7 0.0 1.1 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like Amino_oxidase PF01593.24 BAD85582.1 - 0.19 11.0 0.0 0.29 10.4 0.0 1.3 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase DR2241 PF18069.1 BAD85583.1 - 0.12 12.3 0.0 0.25 11.2 0.0 1.5 1 0 0 1 1 1 0 DR2241 stabilising domain AAA_15 PF13175.6 BAD85584.1 - 8.6e-73 246.2 13.5 1.8e-72 245.1 13.5 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_21 PF13304.6 BAD85584.1 - 8.9e-23 81.5 2.7 1.3e-21 77.7 2.7 2.4 1 1 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system DUF2813 PF11398.8 BAD85584.1 - 5.6e-12 45.6 2.3 1.2e-11 44.5 0.0 2.3 2 1 0 2 2 2 1 Protein of unknown function (DUF2813) AAA_23 PF13476.6 BAD85584.1 - 1.5e-08 35.4 7.9 1.5e-08 35.4 7.9 2.4 2 1 0 2 2 2 1 AAA domain SMC_N PF02463.19 BAD85584.1 - 3.9e-07 29.7 0.0 7.7e-07 28.8 0.0 1.5 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 BAD85584.1 - 9.4e-06 25.3 0.0 2.4e-05 24.0 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.27 BAD85584.1 - 1.7e-05 25.3 1.0 0.00013 22.5 0.0 2.8 3 1 0 3 3 3 1 ABC transporter AAA_27 PF13514.6 BAD85584.1 - 0.00071 19.2 0.0 0.0016 18.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 BAD85584.1 - 0.0067 16.4 0.0 0.018 14.9 0.0 1.8 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 BAD85584.1 - 0.0093 16.2 0.0 0.32 11.3 0.0 2.7 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.6 BAD85584.1 - 0.024 15.0 0.0 0.68 10.3 0.0 2.9 2 1 1 3 3 3 0 AAA ATPase domain MMR_HSR1 PF01926.23 BAD85584.1 - 0.069 13.2 0.0 0.27 11.3 0.0 2.0 2 0 0 2 2 2 0 50S ribosome-binding GTPase FGGY_N PF00370.21 BAD85585.1 - 1.2e-88 296.8 0.0 1.9e-88 296.2 0.0 1.3 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.16 BAD85585.1 - 3.4e-57 193.4 0.6 2.1e-56 190.8 0.1 2.2 3 0 0 3 3 3 1 FGGY family of carbohydrate kinases, C-terminal domain GDPD PF03009.17 BAD85586.1 - 8.9e-38 130.5 0.1 8.5e-36 124.0 0.1 2.2 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family PI-PLC-X PF00388.19 BAD85586.1 - 0.0062 16.1 0.0 0.013 15.1 0.0 1.6 1 0 0 1 1 1 1 Phosphatidylinositol-specific phospholipase C, X domain DUF2201 PF09967.9 BAD85586.1 - 0.11 12.6 0.1 0.22 11.7 0.1 1.5 1 1 0 1 1 1 0 VWA-like domain (DUF2201) GDPD PF03009.17 BAD85587.1 - 4.4e-18 66.0 0.0 1.3e-13 51.3 0.0 2.1 1 1 1 2 2 2 2 Glycerophosphoryl diester phosphodiesterase family MFS_1 PF07690.16 BAD85588.1 - 1.4e-49 169.0 40.1 7.4e-33 113.9 13.5 2.0 1 1 0 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.6 BAD85588.1 - 1.5e-26 93.0 27.9 2.6e-26 92.2 27.9 1.4 1 1 0 1 1 1 1 MFS/sugar transport protein LacY_symp PF01306.19 BAD85588.1 - 7.6e-07 28.3 9.3 7.6e-07 28.3 9.3 3.0 2 1 0 3 3 3 1 LacY proton/sugar symporter ERGIC_N PF13850.6 BAD85588.1 - 0.12 12.8 3.0 25 5.3 0.1 4.0 4 0 0 4 4 4 0 Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC) Deltameth_res PF16020.5 BAD85588.1 - 0.39 10.6 3.0 1.2 9.1 0.3 2.8 2 0 0 2 2 2 0 Deltamethrin resistance MFS_3 PF05977.13 BAD85588.1 - 0.76 8.1 10.4 0.04 12.3 4.6 1.6 2 0 0 2 2 2 0 Transmembrane secretion effector MFS_1 PF07690.16 BAD85589.1 - 3.3e-24 85.5 45.4 3.7e-12 45.8 22.5 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.6 BAD85589.1 - 1.4e-13 50.2 21.5 1.4e-13 50.2 21.5 1.3 1 1 0 1 1 1 1 MFS/sugar transport protein Sugar_tr PF00083.24 BAD85589.1 - 9.8e-06 24.7 18.7 1.2e-05 24.4 9.0 2.4 2 0 0 2 2 2 2 Sugar (and other) transporter BT1 PF03092.16 BAD85589.1 - 0.25 9.5 7.4 0.02 13.2 0.9 2.1 2 0 0 2 2 2 0 BT1 family DUF2663 PF10864.8 BAD85589.1 - 0.39 11.1 1.6 1.6 9.1 0.6 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2663) Hydrolase_4 PF12146.8 BAD85590.1 - 1.4e-17 63.8 0.0 2.2e-12 46.7 0.0 2.1 1 1 1 2 2 2 2 Serine aminopeptidase, S33 Peptidase_S15 PF02129.18 BAD85590.1 - 3.1e-17 63.1 0.0 1.7e-13 50.8 0.0 2.1 2 0 0 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_6 PF12697.7 BAD85590.1 - 2.2e-11 44.8 0.0 6.3e-11 43.3 0.0 1.7 1 1 0 1 1 1 1 Alpha/beta hydrolase family DLH PF01738.18 BAD85590.1 - 3.3e-11 43.2 0.1 9.2e-10 38.4 0.1 2.5 1 1 0 1 1 1 1 Dienelactone hydrolase family Peptidase_S9 PF00326.21 BAD85590.1 - 8.2e-11 41.8 0.0 1.2e-10 41.2 0.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_1 PF00561.20 BAD85590.1 - 1.1e-10 41.6 0.0 1.2e-07 31.6 0.0 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold FSH1 PF03959.13 BAD85590.1 - 8.1e-06 25.7 0.0 7.5e-05 22.5 0.0 2.5 1 1 0 1 1 1 1 Serine hydrolase (FSH1) LIP PF03583.14 BAD85590.1 - 0.0021 17.4 0.0 0.0078 15.6 0.0 1.7 2 0 0 2 2 2 1 Secretory lipase Acyl_transf_2 PF02273.15 BAD85590.1 - 0.0067 15.7 0.0 0.014 14.6 0.0 1.5 2 0 0 2 2 2 1 Acyl transferase Abhydrolase_2 PF02230.16 BAD85590.1 - 0.0078 16.0 0.0 0.12 12.2 0.0 2.5 3 0 0 3 3 3 1 Phospholipase/Carboxylesterase BAAT_C PF08840.11 BAD85590.1 - 0.018 14.9 0.0 0.2 11.6 0.0 2.0 1 1 0 2 2 2 0 BAAT / Acyl-CoA thioester hydrolase C terminal DUF829 PF05705.14 BAD85590.1 - 0.022 14.7 0.0 0.38 10.6 0.0 2.1 2 0 0 2 2 2 0 Eukaryotic protein of unknown function (DUF829) DUF4627 PF15425.6 BAD85590.1 - 0.057 13.0 0.1 0.08 12.6 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4627) MitoNEET_N PF10660.9 BAD85590.1 - 0.15 12.1 0.2 0.4 10.7 0.2 1.7 1 0 0 1 1 1 0 Iron-containing outer mitochondrial membrane protein N-terminus DUF2334 PF10096.9 BAD85591.1 - 2.8e-40 138.2 0.3 3.4e-40 137.9 0.3 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2334) Polysacc_deac_1 PF01522.21 BAD85591.1 - 5.4e-06 26.3 0.0 8.3e-06 25.7 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide deacetylase DUF2691 PF10903.8 BAD85591.1 - 0.087 12.7 0.1 0.17 11.7 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2691) Wzz PF02706.15 BAD85591.1 - 0.18 12.1 0.0 0.28 11.5 0.0 1.3 1 0 0 1 1 1 0 Chain length determinant protein Thymidylate_kin PF02223.17 BAD85592.1 - 1.7e-55 187.6 0.0 2e-55 187.4 0.0 1.0 1 0 0 1 1 1 1 Thymidylate kinase AAA_28 PF13521.6 BAD85592.1 - 2.4e-05 24.6 0.0 7.2e-05 23.1 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 BAD85592.1 - 0.00068 20.2 0.0 0.0037 17.8 0.0 2.2 1 1 0 1 1 1 1 AAA domain dNK PF01712.19 BAD85592.1 - 0.00093 19.1 0.6 0.54 10.1 0.0 2.5 2 1 0 2 2 2 2 Deoxynucleoside kinase AAA_17 PF13207.6 BAD85592.1 - 0.0018 18.7 0.0 0.0048 17.3 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 BAD85592.1 - 0.0022 18.3 0.0 0.0044 17.3 0.0 1.7 1 1 1 2 2 2 1 AAA domain AAA_33 PF13671.6 BAD85592.1 - 0.0024 18.1 0.0 0.0036 17.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain PPK2 PF03976.14 BAD85592.1 - 0.0053 16.3 0.1 0.015 14.8 0.0 1.8 2 0 0 2 2 2 1 Polyphosphate kinase 2 (PPK2) Ploopntkinase1 PF18748.1 BAD85592.1 - 0.0076 15.8 0.0 0.053 13.0 0.0 1.9 2 0 0 2 2 2 1 P-loop Nucleotide Kinase1 SRP54 PF00448.22 BAD85592.1 - 0.015 15.0 0.0 0.026 14.1 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain KTI12 PF08433.10 BAD85592.1 - 0.025 14.0 0.1 0.092 12.2 0.0 1.9 3 0 0 3 3 3 0 Chromatin associated protein KTI12 AAA_30 PF13604.6 BAD85592.1 - 0.025 14.3 0.0 0.043 13.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain SKI PF01202.22 BAD85592.1 - 0.039 14.1 0.1 5.7 7.0 0.1 2.2 2 0 0 2 2 2 0 Shikimate kinase K-box PF01486.17 BAD85592.1 - 0.076 13.2 0.4 0.13 12.5 0.4 1.3 1 0 0 1 1 1 0 K-box region DUF2824 PF11039.8 BAD85592.1 - 0.094 12.7 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2824) AAA_5 PF07728.14 BAD85592.1 - 0.096 12.7 0.1 0.29 11.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) CbiA PF01656.23 BAD85592.1 - 0.11 12.5 0.0 0.14 12.2 0.0 1.4 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain PGM_PMM_I PF02878.16 BAD85593.1 - 6.1e-06 26.0 0.0 1.3e-05 24.9 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PEPCK_GTP PF00821.18 BAD85594.1 - 6.4e-107 357.5 0.0 8.3e-107 357.1 0.0 1.1 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain PEPCK_N PF17297.2 BAD85594.1 - 5.8e-61 205.9 0.0 7.8e-61 205.5 0.0 1.2 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxykinase N-terminal domain Phosphorylase PF00343.20 BAD85595.1 - 1.8e-38 132.4 0.0 2.9e-21 75.5 0.0 4.1 2 1 1 4 4 4 4 Carbohydrate phosphorylase DUF3417 PF11897.8 BAD85595.1 - 7.5e-31 106.8 1.4 7.5e-31 106.8 1.4 3.1 3 0 0 3 3 3 1 Protein of unknown function (DUF3417) Glyco_hydro_71 PF03659.14 BAD85595.1 - 0.39 9.5 2.2 0.76 8.5 2.2 1.4 1 0 0 1 1 1 0 Glycosyl hydrolase family 71 tRNA-synt_1c PF00749.21 BAD85597.1 - 1.1e-84 284.0 0.0 1.5e-84 283.6 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.18 BAD85597.1 - 4e-30 105.0 0.0 9e-30 103.8 0.0 1.6 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain Phage_holin_3_6 PF07332.11 BAD85598.1 - 0.016 15.2 0.6 0.016 15.2 0.6 1.4 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III DUF2964 PF11177.8 BAD85598.1 - 0.38 11.0 7.9 1.3 9.3 0.7 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2964) Toprim_4 PF13662.6 BAD85599.1 - 2.5e-14 53.5 1.2 1.7e-13 50.8 0.5 2.4 2 0 0 2 2 2 1 Toprim domain Toprim_2 PF13155.6 BAD85599.1 - 8.7e-07 29.3 0.0 4.4e-06 27.0 0.0 2.2 2 0 0 2 2 2 1 Toprim-like Toprim PF01751.22 BAD85599.1 - 0.00088 19.5 0.3 0.00088 19.5 0.3 2.7 3 2 0 3 3 3 1 Toprim domain CCDC53 PF10152.9 BAD85599.1 - 0.067 13.6 0.5 0.23 11.9 0.5 1.9 1 1 0 1 1 1 0 Subunit CCDC53 of WASH complex FDF PF09532.10 BAD85599.1 - 0.19 12.6 0.5 0.43 11.5 0.5 1.6 1 0 0 1 1 1 0 FDF domain Toprim PF01751.22 BAD85600.1 - 1.8e-05 24.9 0.0 3.2e-05 24.1 0.0 1.5 1 1 0 1 1 1 1 Toprim domain Toprim_4 PF13662.6 BAD85600.1 - 0.00043 20.7 0.0 0.0012 19.3 0.0 1.7 1 1 0 1 1 1 1 Toprim domain Toprim_2 PF13155.6 BAD85600.1 - 0.012 16.0 0.0 0.016 15.6 0.0 1.2 1 0 0 1 1 1 0 Toprim-like Toprim_3 PF13362.6 BAD85600.1 - 0.024 15.0 0.0 0.036 14.4 0.0 1.2 1 0 0 1 1 1 0 Toprim domain Fibin PF15819.5 BAD85600.1 - 0.1 12.3 0.3 1.2 8.9 0.0 2.1 2 0 0 2 2 2 0 Fin bud initiation factor homologue Radical_SAM PF04055.21 BAD85601.1 - 9.8e-26 91.1 0.0 2.2e-25 90.0 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.19 BAD85601.1 - 1.6e-09 37.8 0.0 2.8e-09 37.0 0.0 1.4 1 0 0 1 1 1 1 B12 binding domain CBFD_NFYB_HMF PF00808.23 BAD85602.1 - 5.5e-21 74.6 0.5 6e-21 74.5 0.5 1.0 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.24 BAD85602.1 - 2.2e-10 41.0 0.2 2.4e-10 40.9 0.2 1.1 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 CENP-T_C PF15511.6 BAD85602.1 - 2.3e-07 30.9 0.1 2.3e-07 30.9 0.1 1.0 1 0 0 1 1 1 1 Centromere kinetochore component CENP-T histone fold CENP-S PF15630.6 BAD85602.1 - 1.6e-06 28.4 0.0 1.7e-06 28.3 0.0 1.1 1 0 0 1 1 1 1 CENP-S protein TFIID-31kDa PF02291.15 BAD85602.1 - 5e-06 26.6 0.0 5.4e-06 26.5 0.0 1.0 1 0 0 1 1 1 1 Transcription initiation factor IID, 31kD subunit TAF PF02969.17 BAD85602.1 - 6.2e-06 26.3 0.3 6.6e-06 26.2 0.3 1.1 1 0 0 1 1 1 1 TATA box binding protein associated factor (TAF) Bromo_TP PF07524.13 BAD85602.1 - 1.6e-05 24.8 0.0 1.7e-05 24.7 0.0 1.0 1 0 0 1 1 1 1 Bromodomain associated TFIID_20kDa PF03847.13 BAD85602.1 - 8.7e-05 22.9 0.1 9.4e-05 22.8 0.1 1.1 1 0 0 1 1 1 1 Transcription initiation factor TFIID subunit A TFIID-18kDa PF02269.16 BAD85602.1 - 0.0002 21.3 0.0 0.00022 21.2 0.0 1.1 1 0 0 1 1 1 1 Transcription initiation factor IID, 18kD subunit PE PF00934.20 BAD85602.1 - 0.024 14.9 0.0 0.028 14.7 0.0 1.1 1 0 0 1 1 1 0 PE family DUF1931 PF09123.11 BAD85602.1 - 0.05 13.7 0.5 0.061 13.4 0.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1931) CENP-X PF09415.10 BAD85602.1 - 0.053 13.8 0.8 0.061 13.6 0.8 1.1 1 0 0 1 1 1 0 CENP-S associating Centromere protein X dUTPase PF00692.19 BAD85603.1 - 3.3e-16 59.1 0.0 4e-15 55.6 0.0 1.9 1 1 1 2 2 2 1 dUTPase DCD PF06559.11 BAD85603.1 - 0.00034 19.5 0.0 0.15 10.8 0.0 2.3 1 1 0 1 1 1 1 2'-deoxycytidine 5'-triphosphate deaminase (DCD) Ribosomal_60s PF00428.19 BAD85604.1 - 5.5e-20 71.7 21.1 6.6e-20 71.5 21.1 1.1 1 0 0 1 1 1 1 60s Acidic ribosomal protein TetR_C_31 PF17940.1 BAD85604.1 - 4.3e-05 23.7 2.1 4.3e-05 23.7 2.1 1.4 1 1 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain PHY PF00360.20 BAD85604.1 - 0.0089 15.4 0.1 0.01 15.2 0.1 1.1 1 0 0 1 1 1 1 Phytochrome region YceD PF02620.17 BAD85604.1 - 0.027 14.6 0.5 0.029 14.5 0.5 1.1 1 0 0 1 1 1 0 Large ribosomal RNA subunit accumulation protein YceD UPF0154 PF03672.13 BAD85604.1 - 0.2 11.7 0.0 0.31 11.1 0.0 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0154) RL10P_insert PF17777.1 BAD85605.1 - 5.7e-24 83.9 0.2 1.2e-23 82.9 0.2 1.6 1 0 0 1 1 1 1 Insertion domain in 60S ribosomal protein L10P Ribosomal_L10 PF00466.20 BAD85605.1 - 6.7e-22 77.5 0.0 1.3e-21 76.6 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L10 Ribosomal_60s PF00428.19 BAD85605.1 - 6e-07 30.0 13.3 6e-07 30.0 13.3 3.6 4 1 0 4 4 4 1 60s Acidic ribosomal protein PriA_C PF18074.1 BAD85605.1 - 0.11 13.3 0.1 0.48 11.3 0.1 2.1 1 0 0 1 1 1 0 Primosomal protein N C-terminal domain 7TMR-HDED PF07697.11 BAD85605.1 - 0.39 10.8 4.4 0.52 10.4 0.2 2.4 2 0 0 2 2 2 0 7TM-HD extracellular PBP_sp32 PF07222.12 BAD85605.1 - 1.8 7.9 5.7 2.9 7.3 5.7 1.2 1 0 0 1 1 1 0 Proacrosin binding protein sp32 Ribosomal_L1 PF00687.21 BAD85606.1 - 7.5e-51 172.8 0.6 8.9e-51 172.5 0.6 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family FAM91_C PF14648.6 BAD85606.1 - 0.0089 14.9 0.0 0.017 14.0 0.0 1.4 1 0 0 1 1 1 1 FAM91 C-terminus GyrB_insert PF18053.1 BAD85606.1 - 0.02 14.7 0.2 3.9 7.3 0.0 2.3 2 0 0 2 2 2 0 DNA gyrase B subunit insert domain PTS_IIB PF02302.17 BAD85606.1 - 0.24 12.1 1.5 0.83 10.4 0.0 2.4 2 1 1 3 3 3 0 PTS system, Lactose/Cellobiose specific IIB subunit Ribosomal_L11_N PF03946.14 BAD85607.1 - 2.2e-24 85.1 1.3 2.2e-24 85.1 1.3 1.7 2 0 0 2 2 2 1 Ribosomal protein L11, N-terminal domain Ribosomal_L11 PF00298.19 BAD85607.1 - 1.6e-22 79.8 1.7 3.1e-22 78.9 1.7 1.5 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Poly_export PF02563.16 BAD85607.1 - 0.061 13.5 0.1 11 6.3 0.0 2.7 3 0 0 3 3 3 0 Polysaccharide biosynthesis/export protein Spt5-NGN PF03439.13 BAD85608.1 - 2.9e-23 81.6 0.0 5.2e-23 80.7 0.0 1.4 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.29 BAD85608.1 - 2.6e-09 36.7 0.7 7.4e-09 35.3 0.7 1.8 2 0 0 2 2 2 1 KOW motif DUF411 PF04214.13 BAD85608.1 - 0.013 15.4 0.0 0.023 14.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF Glyco_hydro_65C PF03633.15 BAD85608.1 - 0.077 12.9 1.5 0.65 9.9 0.7 2.2 2 0 0 2 2 2 0 Glycosyl hydrolase family 65, C-terminal domain SecE PF00584.20 BAD85609.1 - 0.00012 21.9 0.3 0.00014 21.7 0.3 1.1 1 0 0 1 1 1 1 SecE/Sec61-gamma subunits of protein translocation complex DUF996 PF06195.13 BAD85609.1 - 0.0023 18.2 1.3 0.0025 18.1 1.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF996) TraQ PF09679.10 BAD85609.1 - 0.063 13.2 0.2 0.08 12.9 0.2 1.2 1 0 0 1 1 1 0 Type-F conjugative transfer system pilin chaperone (TraQ) Tubulin PF00091.25 BAD85610.1 - 4.6e-47 160.8 0.5 8.4e-47 159.9 0.5 1.5 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 BAD85610.1 - 6.1e-32 109.8 1.1 2e-31 108.1 1.1 1.9 1 0 0 1 1 1 1 FtsZ family, C-terminal domain AlaDh_PNT_C PF01262.21 BAD85610.1 - 0.0058 16.0 0.9 0.013 14.8 0.9 1.6 1 1 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain DUF3236 PF11576.8 BAD85610.1 - 0.0069 16.1 1.0 0.015 15.0 0.1 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF3236) ThiF PF00899.21 BAD85610.1 - 0.009 15.4 0.0 0.03 13.7 0.0 1.8 2 0 0 2 2 2 1 ThiF family DUF4147 PF13660.6 BAD85610.1 - 0.012 15.1 4.8 0.21 11.1 0.5 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF4147) Tubulin_2 PF13809.6 BAD85610.1 - 0.022 14.0 2.5 0.26 10.4 0.0 2.3 2 0 0 2 2 2 0 Tubulin like NAD_binding_10 PF13460.6 BAD85610.1 - 0.068 13.0 0.4 0.2 11.5 0.1 1.9 2 0 0 2 2 2 0 NAD(P)H-binding NAD_binding_7 PF13241.6 BAD85610.1 - 0.14 12.7 0.7 1 9.8 0.1 2.3 2 1 0 2 2 2 0 Putative NAD(P)-binding GCH_III PF05165.12 BAD85610.1 - 0.24 10.7 1.8 2.5 7.3 0.2 2.3 2 0 0 2 2 2 0 GTP cyclohydrolase III tRNA_deacylase PF04414.12 BAD85611.1 - 1.6e-68 230.3 0.1 1.9e-68 230.0 0.1 1.1 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase Yqai PF09466.10 BAD85611.1 - 1.1 9.7 3.3 46 4.4 0.1 3.0 3 0 0 3 3 3 0 Hypothetical protein Yqai Class_IIIsignal PF04021.12 BAD85612.1 - 1.1e-08 34.8 1.0 1.4e-08 34.4 1.0 1.2 1 0 0 1 1 1 1 Class III signal peptide DUF948 PF06103.11 BAD85612.1 - 0.018 15.3 1.0 0.023 15.0 1.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) Arabinose_Isome PF02610.15 BAD85613.1 - 0.00011 21.6 0.0 0.00015 21.1 0.0 1.2 1 0 0 1 1 1 1 L-arabinose isomerase PIN_5 PF08745.11 BAD85614.1 - 3e-66 222.8 0.3 3.4e-66 222.6 0.3 1.0 1 0 0 1 1 1 1 PINc domain ribonuclease BofC_C PF08955.10 BAD85614.1 - 0.12 12.5 0.1 11 6.1 0.0 2.9 2 1 1 3 3 3 0 BofC C-terminal domain Rib_5-P_isom_A PF06026.14 BAD85615.1 - 5.2e-66 221.5 0.1 6.4e-66 221.2 0.1 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.22 BAD85615.1 - 6.4e-08 32.7 0.1 1.3e-05 25.2 0.0 2.2 2 0 0 2 2 2 2 DeoR C terminal sensor domain KH_7 PF17214.3 BAD85617.1 - 2.7e-30 104.1 3.8 7.3e-28 96.3 1.2 2.7 2 0 0 2 2 2 2 KH domain Beta-Casp PF10996.8 BAD85617.1 - 3.1e-26 91.8 0.0 5.6e-26 91.0 0.0 1.4 1 0 0 1 1 1 1 Beta-Casp domain RMMBL PF07521.12 BAD85617.1 - 1.2e-18 66.8 0.1 3e-18 65.5 0.1 1.8 1 0 0 1 1 1 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B_6 PF16661.5 BAD85617.1 - 1.9e-10 40.5 0.0 3.5e-10 39.6 0.0 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B PF00753.27 BAD85617.1 - 6.8e-08 32.8 4.8 8.3e-07 29.2 4.8 2.4 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 BAD85617.1 - 7.9e-06 25.5 0.1 1.8e-05 24.4 0.1 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain KH_2 PF07650.17 BAD85617.1 - 5.8e-05 22.8 3.1 0.0072 16.1 0.1 2.8 1 1 1 2 2 2 2 KH domain KH_4 PF13083.6 BAD85617.1 - 0.0034 17.2 0.2 0.012 15.4 0.0 2.1 2 0 0 2 2 2 1 KH domain KH_1 PF00013.29 BAD85617.1 - 0.0052 16.6 0.2 0.08 12.8 0.1 2.6 2 0 0 2 2 2 1 KH domain RPEL PF02755.15 BAD85617.1 - 0.057 13.1 0.9 0.15 11.8 0.1 2.2 2 0 0 2 2 2 0 RPEL repeat Lactamase_B_3 PF13483.6 BAD85617.1 - 0.095 12.6 0.0 0.25 11.2 0.0 1.6 1 0 0 1 1 1 0 Beta-lactamase superfamily domain Proteasome PF00227.26 BAD85618.1 - 1.8e-53 180.8 0.3 2.3e-53 180.5 0.3 1.0 1 0 0 1 1 1 1 Proteasome subunit AAA_17 PF13207.6 BAD85619.1 - 0.00023 21.6 0.0 0.003 18.0 0.0 2.3 2 0 0 2 2 2 1 AAA domain ELFV_dehydrog PF00208.21 BAD85620.1 - 1e-73 248.1 0.2 1.3e-73 247.7 0.2 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 BAD85620.1 - 2.6e-54 182.6 0.0 4.9e-54 181.7 0.0 1.5 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.19 BAD85620.1 - 8.6e-05 22.0 0.0 0.0002 20.8 0.0 1.6 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Phage_holin_6_1 PF09682.10 BAD85620.1 - 0.091 13.2 0.0 0.31 11.5 0.0 1.9 1 0 0 1 1 1 0 Bacteriophage holin of superfamily 6 (Holin_LLH) SNF PF00209.18 BAD85621.1 - 2.5e-40 138.6 37.5 6e-21 74.7 18.7 2.2 1 1 1 2 2 2 2 Sodium:neurotransmitter symporter family 2TM PF13239.6 BAD85622.1 - 0.053 13.8 0.5 0.053 13.8 0.5 1.1 1 0 0 1 1 1 0 2TM domain SLATT_5 PF18160.1 BAD85623.1 - 0.0065 15.8 2.7 0.011 15.0 2.7 1.5 1 0 0 1 1 1 1 SMODS and SLOG-associating 2TM effector domain family 5 Hydantoinase_A PF01968.18 BAD85623.1 - 0.052 12.8 2.5 0.085 12.1 2.5 1.2 1 0 0 1 1 1 0 Hydantoinase/oxoprolinase Prominin PF05478.11 BAD85623.1 - 0.093 10.7 1.3 0.13 10.2 1.3 1.2 1 0 0 1 1 1 0 Prominin HTH_WhiA PF02650.14 BAD85623.1 - 0.11 12.8 2.9 0.18 12.2 0.8 2.2 1 1 0 2 2 2 0 WhiA C-terminal HTH domain CARD PF00619.21 BAD85623.1 - 0.34 11.0 3.6 0.55 10.3 3.6 1.3 1 0 0 1 1 1 0 Caspase recruitment domain DUF2207 PF09972.9 BAD85623.1 - 5.5 5.6 10.6 8.8 5.0 10.6 1.5 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) P-II PF00543.22 BAD85624.1 - 7.3e-28 97.2 0.2 1.8e-27 95.9 0.2 1.5 1 1 0 1 1 1 1 Nitrogen regulatory protein P-II DNA_gyraseA_C PF03989.13 BAD85624.1 - 0.061 12.8 1.0 4.6 6.8 0.0 2.6 3 0 0 3 3 3 0 DNA gyrase C-terminal domain, beta-propeller Glyco_hydro_57 PF03065.15 BAD85625.1 - 8.4e-70 235.5 1.3 1.6e-69 234.6 1.3 1.5 1 1 0 1 1 1 1 Glycosyl hydrolase family 57 DUF1957 PF09210.11 BAD85625.1 - 3e-31 107.8 1.8 5.7e-28 97.3 0.0 3.5 3 0 0 3 3 3 1 Domain of unknown function (DUF1957) HHH_5 PF14520.6 BAD85625.1 - 1.5e-11 44.7 0.3 3.7e-11 43.4 0.3 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH_3 PF12836.7 BAD85625.1 - 0.00061 20.0 0.2 0.015 15.5 0.0 2.7 2 0 0 2 2 2 1 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.9 BAD85625.1 - 0.0011 18.7 0.0 0.0029 17.4 0.0 1.7 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda DUF4332 PF14229.6 BAD85625.1 - 0.0021 18.3 0.0 0.0055 16.9 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4332) HHH PF00633.23 BAD85625.1 - 0.0031 17.3 0.1 0.075 12.9 0.0 2.5 2 0 0 2 2 2 1 Helix-hairpin-helix motif Cdd1 PF11731.8 BAD85625.1 - 0.045 14.0 0.0 0.13 12.5 0.0 1.7 1 0 0 1 1 1 0 Pathogenicity locus Cpn60_TCP1 PF00118.24 BAD85625.1 - 0.058 12.0 0.5 0.099 11.2 0.5 1.2 1 0 0 1 1 1 0 TCP-1/cpn60 chaperonin family Nitro_FeMo-Co PF02579.17 BAD85625.1 - 0.075 13.4 0.0 0.19 12.1 0.0 1.7 1 0 0 1 1 1 0 Dinitrogenase iron-molybdenum cofactor RNA_pol_A_CTD PF03118.15 BAD85625.1 - 0.077 12.8 0.3 0.84 9.4 0.1 2.4 1 1 1 2 2 2 0 Bacterial RNA polymerase, alpha chain C terminal domain PilJ_C PF18223.1 BAD85625.1 - 0.15 12.6 0.2 0.15 12.6 0.2 2.2 2 0 0 2 2 2 0 Pili PilJ C-terminal domain HHH_2 PF12826.7 BAD85625.1 - 0.16 12.1 0.0 0.41 10.8 0.0 1.6 1 0 0 1 1 1 0 Helix-hairpin-helix motif Kindlin_2_N PF18124.1 BAD85625.1 - 7.6 6.8 6.2 69 3.7 0.0 2.5 2 0 0 2 2 2 0 Kindlin-2 N-terminal domain FbpA PF05833.11 BAD85627.1 - 9.9e-87 291.6 12.9 1.2e-86 291.3 12.9 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) NFACT-R_1 PF05670.13 BAD85627.1 - 1.9e-29 102.5 0.0 3.6e-29 101.6 0.0 1.5 1 0 0 1 1 1 1 NFACT protein RNA binding domain NFACT-C PF11923.8 BAD85627.1 - 0.059 13.3 0.0 0.059 13.3 0.0 2.8 3 0 0 3 3 3 0 NFACT protein C-terminal domain Ribosomal_S13 PF00416.22 BAD85627.1 - 0.068 13.6 3.4 0.083 13.3 0.0 2.7 4 0 0 4 4 4 0 Ribosomal protein S13/S18 DUF272 PF03312.15 BAD85627.1 - 0.098 12.9 2.0 1.2 9.4 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF272) IMS_C PF11799.8 BAD85627.1 - 0.12 13.1 0.0 0.37 11.5 0.0 1.8 1 0 0 1 1 1 0 impB/mucB/samB family C-terminal domain NikR_C PF08753.11 BAD85628.1 - 4.3e-33 113.3 4.0 6.9e-33 112.6 4.0 1.3 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.21 BAD85628.1 - 3.2e-08 33.2 1.2 4.1e-08 32.9 0.0 1.8 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family HhH-GPD PF00730.25 BAD85628.1 - 0.0078 16.7 0.1 3.4 8.2 0.0 2.1 1 1 1 2 2 2 2 HhH-GPD superfamily base excision DNA repair protein HicB_lk_antitox PF15919.5 BAD85628.1 - 0.05 13.7 0.0 0.18 11.9 0.0 1.9 2 0 0 2 2 2 0 HicB_like antitoxin of bacterial toxin-antitoxin system PepX_N PF09168.10 BAD85629.1 - 0.063 13.7 0.1 0.086 13.3 0.1 1.2 1 0 0 1 1 1 0 X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal PALP PF00291.25 BAD85631.1 - 5.1e-45 154.1 0.2 6.4e-45 153.8 0.2 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Semialdhyde_dh PF01118.24 BAD85632.1 - 1.9e-28 99.3 0.0 3.1e-28 98.7 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 BAD85632.1 - 5.3e-28 98.3 0.0 1.2e-27 97.2 0.0 1.6 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, dimerisation domain DapB_N PF01113.20 BAD85632.1 - 0.0027 17.8 0.0 0.0043 17.2 0.0 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Epimerase PF01370.21 BAD85632.1 - 0.0067 15.9 0.0 0.0096 15.4 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Gp_dh_C PF02800.20 BAD85632.1 - 0.028 14.0 0.0 0.05 13.2 0.0 1.3 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain GFO_IDH_MocA PF01408.22 BAD85632.1 - 0.094 13.5 0.0 0.16 12.8 0.0 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold GHMP_kinases_C PF08544.13 BAD85633.1 - 9.5e-13 48.3 0.0 2.1e-12 47.2 0.0 1.5 1 0 0 1 1 1 1 GHMP kinases C terminal GHMP_kinases_N PF00288.26 BAD85633.1 - 3.5e-11 43.2 2.6 3.5e-11 43.2 2.6 2.9 3 1 1 4 4 4 1 GHMP kinases N terminal domain DUF4244 PF14029.6 BAD85633.1 - 6.3 6.3 7.5 0.65 9.5 0.4 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF4244) AA_kinase PF00696.28 BAD85634.1 - 1.6e-38 132.7 0.0 2.1e-38 132.3 0.0 1.1 1 0 0 1 1 1 1 Amino acid kinase family NAD_binding_8 PF13450.6 BAD85634.1 - 0.035 14.3 0.0 0.073 13.3 0.0 1.5 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Meth_synt_2 PF01717.18 BAD85635.1 - 3.3e-56 190.9 0.0 4.5e-56 190.5 0.0 1.1 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.12 BAD85635.1 - 1.8e-08 34.3 0.2 2.4e-08 33.9 0.2 1.2 1 0 0 1 1 1 1 Cobalamin-independent synthase, N-terminal domain Band_7 PF01145.25 BAD85635.1 - 0.11 12.5 0.0 0.46 10.5 0.0 2.0 1 1 0 1 1 1 0 SPFH domain / Band 7 family Meth_synt_1 PF08267.12 BAD85636.1 - 2.4e-11 43.7 0.0 1.6e-09 37.7 0.0 2.1 2 0 0 2 2 2 2 Cobalamin-independent synthase, N-terminal domain Meth_synt_2 PF01717.18 BAD85636.1 - 5.5e-11 42.3 0.0 1.5e-09 37.6 0.0 2.0 1 1 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain MTHFR_C PF12225.8 BAD85637.1 - 1.3e-10 40.8 0.1 2.3e-10 40.0 0.1 1.3 1 0 0 1 1 1 1 Methylene-tetrahydrofolate reductase C terminal MTHFR PF02219.17 BAD85637.1 - 6.9e-07 28.9 0.0 8.8e-07 28.5 0.0 1.1 1 0 0 1 1 1 1 Methylenetetrahydrofolate reductase Cys_Met_Meta_PP PF01053.20 BAD85638.1 - 3.7e-106 354.9 0.0 4.6e-106 354.6 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 BAD85638.1 - 1e-07 31.3 0.0 1.4e-07 30.8 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 BAD85638.1 - 2.6e-06 27.0 0.0 5.1e-05 22.8 0.1 2.0 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family RNase_P_p30 PF01876.16 BAD85639.1 - 1.1e-36 126.3 0.0 1.3e-36 126.1 0.0 1.0 1 0 0 1 1 1 1 RNase P subunit p30 Ribosomal_L29 PF00831.23 BAD85639.1 - 0.14 12.2 0.0 0.27 11.2 0.0 1.5 1 0 0 1 1 1 0 Ribosomal L29 protein RNA_binding PF01877.17 BAD85640.1 - 1.5e-38 131.7 2.2 1.9e-38 131.4 2.2 1.1 1 0 0 1 1 1 1 RNA binding NFACT-C PF11923.8 BAD85640.1 - 0.07 13.1 0.5 2.5 8.1 0.1 2.4 2 1 0 2 2 2 0 NFACT protein C-terminal domain ABC_tran PF00005.27 BAD85641.1 - 1.6e-30 106.4 0.0 2.6e-30 105.7 0.0 1.4 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.23 BAD85641.1 - 4.2e-13 49.6 3.8 5.9e-13 49.1 3.8 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region AAA_21 PF13304.6 BAD85641.1 - 6e-05 23.0 0.1 0.054 13.3 0.0 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 BAD85641.1 - 8.1e-05 23.1 0.0 0.0002 21.8 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 BAD85641.1 - 0.0091 15.7 0.0 0.02 14.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF87 PF01935.17 BAD85641.1 - 0.01 16.0 0.0 0.026 14.6 0.0 1.6 1 1 0 1 1 1 0 Helicase HerA, central domain MeaB PF03308.16 BAD85641.1 - 0.012 14.7 0.5 0.029 13.3 0.1 1.8 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_30 PF13604.6 BAD85641.1 - 0.016 15.0 0.0 0.045 13.5 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 BAD85641.1 - 0.022 15.0 0.6 0.19 12.0 0.6 2.4 1 1 0 1 1 1 0 AAA domain CAAD PF14159.6 BAD85641.1 - 0.025 14.4 1.1 0.062 13.1 1.1 1.7 1 0 0 1 1 1 0 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase RsgA_GTPase PF03193.16 BAD85641.1 - 0.026 14.4 0.0 0.055 13.4 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase PduV-EutP PF10662.9 BAD85641.1 - 0.03 14.1 0.1 7.9 6.2 0.0 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation cobW PF02492.19 BAD85641.1 - 0.035 13.7 0.0 0.065 12.8 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain RecA PF00154.21 BAD85641.1 - 0.038 13.5 0.0 0.072 12.5 0.0 1.4 1 0 0 1 1 1 0 recA bacterial DNA recombination protein NB-ARC PF00931.22 BAD85641.1 - 0.061 12.5 0.2 0.19 10.9 0.0 1.9 3 0 0 3 3 3 0 NB-ARC domain AAA_25 PF13481.6 BAD85641.1 - 0.076 12.6 0.0 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 BAD85641.1 - 0.084 13.4 0.1 0.16 12.4 0.1 1.5 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 BAD85641.1 - 0.1 12.5 0.0 0.19 11.6 0.0 1.4 1 0 0 1 1 1 0 NACHT domain Sigma54_activat PF00158.26 BAD85641.1 - 0.11 12.2 0.0 0.19 11.4 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain MMR_HSR1 PF01926.23 BAD85641.1 - 0.11 12.6 0.0 0.27 11.3 0.0 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_24 PF13479.6 BAD85641.1 - 0.18 11.5 0.0 0.31 10.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain REJ PF02010.15 BAD85642.1 - 0.00058 18.8 0.0 0.00075 18.4 0.0 1.1 1 0 0 1 1 1 1 REJ domain Ribosomal_L15e PF00827.17 BAD85643.1 - 3.9e-89 297.5 6.8 4.4e-89 297.3 6.8 1.0 1 0 0 1 1 1 1 Ribosomal L15 Peptidase_M24 PF00557.24 BAD85644.1 - 2.1e-70 236.6 0.1 3.2e-70 236.1 0.1 1.3 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 BAD85644.1 - 2.4e-16 60.6 0.0 4.8e-16 59.6 0.0 1.6 1 1 0 1 1 1 1 Creatinase/Prolidase N-terminal domain TrkA_C PF02080.21 BAD85645.1 - 1.2e-16 60.3 0.3 2.4e-16 59.3 0.3 1.5 1 0 0 1 1 1 1 TrkA-C domain PhoU PF01895.19 BAD85645.1 - 6.2e-10 39.4 5.6 1.1e-09 38.6 5.6 1.4 1 0 0 1 1 1 1 PhoU domain TrkA_C PF02080.21 BAD85646.1 - 7.9e-14 51.2 0.1 1.3e-13 50.5 0.1 1.4 1 0 0 1 1 1 1 TrkA-C domain PhoU PF01895.19 BAD85646.1 - 1.6e-13 50.9 4.4 3e-13 50.0 4.4 1.5 1 0 0 1 1 1 1 PhoU domain PhoU_div PF01865.16 BAD85646.1 - 0.0015 17.9 2.8 0.0023 17.3 2.8 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF47 MgtE PF01769.16 BAD85647.1 - 2.7e-38 131.2 36.9 3.7e-21 75.8 10.2 3.4 3 1 1 4 4 4 2 Divalent cation transporter YfdX PF10938.8 BAD85648.1 - 4.2e-05 23.5 21.6 0.00016 21.6 4.4 3.7 3 1 0 3 3 3 2 YfdX protein Sec5 PF15469.6 BAD85648.1 - 0.014 15.3 0.7 0.014 15.3 0.7 3.2 2 1 1 3 3 3 0 Exocyst complex component Sec5 SRP_SPB PF02978.19 BAD85648.1 - 0.21 12.3 3.5 1 10.0 0.1 2.9 2 1 1 3 3 3 0 Signal peptide binding domain TPR_11 PF13414.6 BAD85648.1 - 0.35 10.6 4.3 11 5.9 0.3 3.8 2 1 1 3 3 3 0 TPR repeat SgrR_N PF12793.7 BAD85648.1 - 0.36 11.1 3.1 0.59 10.4 0.1 2.9 3 1 1 4 4 4 0 Sugar transport-related sRNA regulator N-term Rx_N PF18052.1 BAD85648.1 - 1.1 9.6 11.5 0.37 11.1 0.8 3.7 1 1 0 3 3 3 0 Rx N-terminal domain DUF5113 PF17140.4 BAD85648.1 - 1.7 8.4 5.5 6.5 6.5 0.5 2.9 1 1 3 4 4 4 0 Domain of unknown function (DUF5113) TPR_2 PF07719.17 BAD85648.1 - 1.8 8.9 16.6 11 6.4 0.4 5.8 6 1 0 6 6 5 0 Tetratricopeptide repeat Mt_ATP-synt_D PF05873.12 BAD85648.1 - 2.2 8.1 14.7 0.062 13.1 2.3 3.1 3 1 0 3 3 3 0 ATP synthase D chain, mitochondrial (ATP5H) DUF5339 PF17274.2 BAD85648.1 - 2.2 9.2 9.6 1.8 9.4 0.7 3.6 2 2 1 3 3 3 0 Family of unknown function (DUF5339) P16-Arc PF04699.14 BAD85648.1 - 3.9 7.9 10.4 0.89 10.0 0.9 3.1 2 2 1 3 3 3 0 ARP2/3 complex 16 kDa subunit (p16-Arc) DUF5610 PF18433.1 BAD85648.1 - 6.9 7.2 10.1 4.9 7.7 4.1 3.7 2 2 0 2 2 2 0 Domain of unknown function (DUF5610) HEPN PF05168.14 BAD85648.1 - 8.2 6.6 12.8 5.3e+03 -2.5 12.7 4.1 1 1 0 1 1 1 0 HEPN domain Eco57I PF07669.11 BAD85649.1 - 3.6e-14 53.1 0.0 1.1e-13 51.6 0.0 1.9 1 0 0 1 1 1 1 Eco57I restriction-modification methylase N6_Mtase PF02384.16 BAD85649.1 - 8.4e-14 51.5 0.3 1.9e-05 24.1 0.0 3.1 3 1 0 3 3 3 2 N-6 DNA Methylase TaqI_C PF12950.7 BAD85649.1 - 1.4e-10 41.3 0.1 3.6e-09 36.7 0.0 3.1 2 0 0 2 2 2 1 TaqI-like C-terminal specificity domain MTS PF05175.14 BAD85649.1 - 0.037 13.6 0.0 33 4.0 0.0 3.8 4 0 0 4 4 4 0 Methyltransferase small domain MCC-bdg_PDZ PF10506.9 BAD85649.1 - 0.13 12.3 0.1 0.54 10.3 0.0 2.1 2 0 0 2 2 2 0 PDZ domain of MCC-2 bdg protein for Usher syndrome UVR PF02151.19 BAD85649.1 - 0.29 10.9 2.9 0.25 11.1 0.1 2.5 2 0 0 2 2 2 0 UvrB/uvrC motif tRNA-synt_1 PF00133.22 BAD85650.1 - 1.5e-67 228.2 2.2 3.6e-67 227.0 2.2 1.6 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 BAD85650.1 - 1.6e-32 112.6 0.3 4.7e-32 111.1 0.3 1.9 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 BAD85650.1 - 4.5e-23 81.6 0.3 1.6e-10 40.3 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 BAD85650.1 - 2e-10 40.5 0.1 4e-05 23.1 0.0 2.7 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.6 BAD85650.1 - 3.3e-10 39.8 0.6 1e-09 38.2 0.1 2.1 2 0 0 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1f PF01921.18 BAD85650.1 - 0.00055 19.0 0.0 0.028 13.3 0.0 2.4 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1d PF00750.19 BAD85650.1 - 0.015 14.3 0.0 0.069 12.1 0.0 1.9 2 0 0 2 2 2 0 tRNA synthetases class I (R) UvrB_inter PF17757.1 BAD85650.1 - 0.089 13.0 1.2 0.23 11.6 0.1 2.3 2 0 0 2 2 2 0 UvrB interaction domain tRNA-synt_1b PF00579.25 BAD85650.1 - 0.24 10.7 1.4 1.1 8.5 0.0 2.7 3 0 0 3 3 3 0 tRNA synthetases class I (W and Y) Methyltransf_25 PF13649.6 BAD85653.1 - 4.8e-07 30.4 0.0 2.4e-06 28.2 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 BAD85653.1 - 7.8e-07 29.1 0.0 1.4e-06 28.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 BAD85653.1 - 1e-06 28.3 0.0 2e-06 27.4 0.0 1.5 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_11 PF08241.12 BAD85653.1 - 7e-05 23.4 0.0 0.00014 22.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 BAD85653.1 - 0.00013 21.8 0.0 0.00027 20.8 0.0 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MetW PF07021.12 BAD85653.1 - 0.0017 17.9 0.0 0.0039 16.8 0.0 1.5 1 1 0 1 1 1 1 Methionine biosynthesis protein MetW RrnaAD PF00398.20 BAD85653.1 - 0.19 10.7 0.0 0.27 10.3 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase DUF234 PF03008.14 BAD85654.1 - 1.6e-29 102.2 0.6 4.8e-29 100.7 0.0 2.1 3 0 0 3 3 3 1 Archaea bacterial proteins of unknown function ATPase_2 PF01637.18 BAD85654.1 - 9.7e-26 91.1 0.7 2.2e-24 86.7 0.7 2.3 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 BAD85654.1 - 1.5e-09 38.0 1.3 3.9e-09 36.6 0.1 2.1 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 BAD85654.1 - 7e-07 29.8 0.0 1.4e-06 28.8 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain HTH_5 PF01022.20 BAD85654.1 - 5.6e-05 22.9 0.0 0.00011 22.0 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_45 PF14947.6 BAD85654.1 - 0.00033 20.6 0.2 0.0008 19.3 0.2 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix TniB PF05621.11 BAD85654.1 - 0.0039 16.6 0.0 0.01 15.3 0.0 1.6 1 0 0 1 1 1 1 Bacterial TniB protein AAA_22 PF13401.6 BAD85654.1 - 0.096 13.0 0.0 0.21 11.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 BAD85654.1 - 0.1 13.0 0.0 0.23 11.9 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) HTH_IclR PF09339.10 BAD85654.1 - 0.1 12.4 0.0 0.27 11.1 0.0 1.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain Peptidase_M20 PF01546.28 BAD85655.1 - 3.4e-36 124.9 0.1 4.3e-36 124.6 0.1 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M42 PF05343.14 BAD85655.1 - 1.6e-06 27.4 0.0 3.4e-05 23.0 0.0 2.6 3 0 0 3 3 3 1 M42 glutamyl aminopeptidase Peptidase_M28 PF04389.17 BAD85655.1 - 2.1e-06 27.5 0.0 2.7e-05 23.9 0.0 2.1 2 0 0 2 2 2 1 Peptidase family M28 DUF3267 PF11667.8 BAD85656.1 - 2.4e-19 69.6 4.0 2.4e-19 69.6 4.0 2.1 3 0 0 3 3 3 1 Putative zincin peptidase Peptidase_M50 PF02163.22 BAD85656.1 - 0.0039 16.5 0.1 0.0068 15.7 0.1 1.4 1 0 0 1 1 1 1 Peptidase family M50 Peptidase_M50B PF13398.6 BAD85656.1 - 0.012 15.2 0.6 0.012 15.2 0.6 2.9 1 1 2 3 3 3 0 Peptidase M50B-like TMEM208_SND2 PF05620.11 BAD85656.1 - 1.6 8.4 6.6 2.3 8.0 0.2 2.9 2 1 1 3 3 3 0 SRP-independent targeting protein 2/TMEM208 polyprenyl_synt PF00348.17 BAD85657.1 - 1.6e-70 237.1 0.0 2.4e-70 236.5 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase DASH_Duo1 PF08651.10 BAD85657.1 - 0.16 11.8 0.0 0.42 10.4 0.0 1.6 2 0 0 2 2 2 0 DASH complex subunit Duo1 RMMBL PF07521.12 BAD85658.1 - 7.2e-14 51.5 0.4 2.6e-13 49.7 0.1 2.2 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 BAD85658.1 - 5.8e-13 49.3 0.1 1e-12 48.5 0.1 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 BAD85658.1 - 1.3e-08 34.6 0.0 2.6e-08 33.6 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain PDEase_II PF02112.15 BAD85658.1 - 0.16 11.0 0.0 0.5 9.4 0.1 1.7 2 0 0 2 2 2 0 cAMP phosphodiesterases class-II FMN_dh PF01070.18 BAD85659.1 - 4.4e-27 95.0 0.3 6.7e-16 58.2 0.7 2.1 1 1 0 2 2 2 2 FMN-dependent dehydrogenase IMPDH PF00478.25 BAD85659.1 - 2.6e-07 30.0 4.3 0.0013 17.8 2.8 3.4 3 1 0 3 3 3 2 IMP dehydrogenase / GMP reductase domain NMO PF03060.15 BAD85659.1 - 0.00028 20.4 1.3 0.00064 19.2 1.1 1.6 2 0 0 2 2 2 1 Nitronate monooxygenase Glu_synthase PF01645.17 BAD85659.1 - 0.013 14.6 0.4 0.067 12.3 0.4 2.0 2 0 0 2 2 2 0 Conserved region in glutamate synthase DUF561 PF04481.12 BAD85659.1 - 0.029 13.6 0.0 0.045 12.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF561) HTH_16 PF12645.7 BAD85659.1 - 0.13 12.3 0.0 0.27 11.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Asp_Glu_race PF01177.22 BAD85660.1 - 1.9e-51 175.1 0.0 2.1e-51 174.9 0.0 1.0 1 0 0 1 1 1 1 Asp/Glu/Hydantoin racemase YcaO PF02624.16 BAD85660.1 - 0.086 12.1 0.0 4.7 6.4 0.0 2.2 2 0 0 2 2 2 0 YcaO cyclodehydratase, ATP-ad Mg2+-binding UPF0180 PF03698.13 BAD85660.1 - 0.093 12.9 0.0 0.5 10.6 0.0 2.1 2 1 0 2 2 2 0 Uncharacterised protein family (UPF0180) TctC PF03401.14 BAD85660.1 - 0.11 11.5 0.0 0.15 11.1 0.0 1.1 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter family receptor MoCF_biosynth PF00994.24 BAD85661.1 - 3e-36 124.2 0.0 4.5e-36 123.7 0.0 1.2 1 0 0 1 1 1 1 Probable molybdopterin binding domain KMP11 PF03037.16 BAD85661.1 - 0.089 13.6 0.0 0.19 12.5 0.0 1.6 1 0 0 1 1 1 0 Kinetoplastid membrane protein 11 AA_kinase PF00696.28 BAD85662.1 - 1e-38 133.3 0.0 1.2e-38 133.1 0.0 1.0 1 0 0 1 1 1 1 Amino acid kinase family GHMP_kinases_N PF00288.26 BAD85663.1 - 3.8e-16 59.1 3.6 8e-16 58.0 3.6 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 BAD85663.1 - 2.4e-13 50.3 0.5 2.4e-13 50.3 0.5 2.6 3 2 1 4 4 4 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.9 BAD85663.1 - 0.00065 19.2 0.1 0.003 17.1 0.0 2.2 2 0 0 2 2 2 1 Galactokinase galactose-binding signature DUF86 PF01934.17 BAD85664.1 - 1.2e-25 89.7 0.1 1.4e-25 89.4 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF86 HEPN_RiboL-PSP PF18735.1 BAD85664.1 - 0.00066 19.7 1.2 0.00091 19.2 1.2 1.2 1 0 0 1 1 1 1 RiboL-PSP-HEPN Imm68 PF15583.6 BAD85664.1 - 0.035 14.3 0.1 0.058 13.6 0.1 1.3 1 0 0 1 1 1 0 Immunity protein 68 Corona_NS2A PF05213.12 BAD85664.1 - 0.043 13.2 0.0 0.055 12.8 0.0 1.2 1 0 0 1 1 1 0 Coronavirus NS2A protein Polbeta PF18765.1 BAD85665.1 - 5.7e-16 58.4 0.0 9.3e-16 57.7 0.0 1.4 2 0 0 2 2 2 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 BAD85665.1 - 1.2e-10 41.6 0.0 1.6e-10 41.1 0.0 1.5 1 1 0 1 1 1 1 Nucleotidyltransferase domain RlaP PF10127.9 BAD85665.1 - 0.076 12.6 0.0 0.1 12.2 0.0 1.2 1 0 0 1 1 1 0 RNA repair pathway DNA polymerase beta family Memo PF01875.17 BAD85666.1 - 2e-72 243.6 0.0 2.3e-72 243.4 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein LigB PF02900.18 BAD85666.1 - 0.00068 18.8 0.0 0.00081 18.5 0.0 1.2 1 0 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase PALP PF00291.25 BAD85667.1 - 1.9e-60 204.8 0.0 2.4e-60 204.4 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme PNP_UDP_1 PF01048.20 BAD85668.1 - 1.3e-45 155.5 0.5 1.6e-45 155.2 0.5 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily TPR_12 PF13424.6 BAD85669.1 - 0.027 14.8 5.4 0.39 11.0 0.2 3.8 3 1 1 4 4 4 0 Tetratricopeptide repeat TPR_7 PF13176.6 BAD85669.1 - 0.041 13.9 0.5 16 5.8 0.0 4.0 4 0 0 4 4 4 0 Tetratricopeptide repeat PPR_2 PF13041.6 BAD85669.1 - 0.064 13.5 1.1 12 6.2 0.0 4.1 5 0 0 5 5 5 0 PPR repeat family PPR PF01535.20 BAD85669.1 - 0.1 12.9 5.8 30 5.2 0.0 4.9 6 0 0 6 6 6 0 PPR repeat TPR_19 PF14559.6 BAD85669.1 - 0.54 10.8 3.2 93 3.6 0.0 4.0 3 1 0 4 4 4 0 Tetratricopeptide repeat TPR_2 PF07719.17 BAD85669.1 - 2.2 8.6 13.3 11 6.5 0.1 5.5 6 0 0 6 6 6 0 Tetratricopeptide repeat TPR_10 PF13374.6 BAD85669.1 - 5.5 7.0 6.4 1e+02 3.0 0.1 4.3 5 0 0 5 5 5 0 Tetratricopeptide repeat Pyr_redox_2 PF07992.14 BAD85670.1 - 1.3e-56 192.0 0.0 1.6e-56 191.7 0.0 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 BAD85670.1 - 2.2e-19 69.9 0.1 7.9e-17 61.5 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 BAD85670.1 - 2.2e-18 66.6 4.5 1.5e-16 60.7 2.1 2.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 BAD85670.1 - 1.4e-17 64.0 1.5 1.7e-17 63.6 0.1 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain K_oxygenase PF13434.6 BAD85670.1 - 4e-08 32.8 0.0 2.5e-07 30.1 0.0 2.0 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) GIDA PF01134.22 BAD85670.1 - 2.9e-07 29.9 3.1 0.025 13.6 0.0 3.9 4 1 1 5 5 5 3 Glucose inhibited division protein A FAD_binding_2 PF00890.24 BAD85670.1 - 1.4e-06 27.7 3.8 0.0017 17.5 0.1 3.2 2 1 1 3 3 3 2 FAD binding domain FAD_oxidored PF12831.7 BAD85670.1 - 4.5e-06 26.3 0.4 0.00073 19.0 0.1 2.5 3 0 0 3 3 3 1 FAD dependent oxidoreductase NAD_binding_9 PF13454.6 BAD85670.1 - 9.1e-05 22.5 0.3 0.34 10.9 0.0 3.1 2 1 1 3 3 3 2 FAD-NAD(P)-binding Trp_halogenase PF04820.14 BAD85670.1 - 0.00018 20.5 0.9 0.35 9.7 0.0 2.4 3 0 0 3 3 3 2 Tryptophan halogenase HI0933_like PF03486.14 BAD85670.1 - 0.00099 17.9 0.6 0.04 12.6 0.0 3.1 4 0 0 4 4 4 1 HI0933-like protein DAO PF01266.24 BAD85670.1 - 0.005 16.5 7.9 4.3 6.8 0.1 4.1 3 1 1 4 4 4 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 BAD85670.1 - 0.017 15.4 2.4 1 9.6 0.0 3.0 3 0 0 3 3 3 0 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 BAD85670.1 - 0.036 13.3 0.1 0.29 10.3 0.0 2.2 2 0 0 2 2 2 0 Thi4 family AlaDh_PNT_C PF01262.21 BAD85670.1 - 0.047 13.0 0.1 2.6 7.3 0.0 2.4 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain PP_kinase_C_1 PF17941.1 BAD85670.1 - 0.074 12.6 0.0 0.19 11.2 0.0 1.6 1 0 0 1 1 1 0 Polyphosphate kinase C-terminal domain 1 Lycopene_cycl PF05834.12 BAD85670.1 - 0.33 10.0 2.2 9.4 5.2 0.0 2.8 2 1 1 3 3 3 0 Lycopene cyclase protein PNP_UDP_1 PF01048.20 BAD85671.1 - 7.3e-54 182.5 0.0 8.3e-54 182.3 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily DUF3692 PF12469.8 BAD85672.1 - 0.017 15.4 0.3 0.82 9.9 0.0 2.8 2 1 0 2 2 2 0 CRISPR-associated protein Bse634I PF07832.11 BAD85672.1 - 0.028 13.7 0.1 0.048 13.0 0.1 1.3 1 0 0 1 1 1 0 Cfr10I/Bse634I restriction endonuclease T2SSF PF00482.23 BAD85672.1 - 0.039 13.9 0.1 0.6 10.1 0.0 2.9 3 1 0 3 3 3 0 Type II secretion system (T2SS), protein F ribosomal_L24 PF17136.4 BAD85673.1 - 0.027 14.8 0.2 0.062 13.7 0.2 1.5 2 0 0 2 2 2 0 Ribosomal proteins 50S L24/mitochondrial 39S L24 SRP54 PF00448.22 BAD85675.1 - 6.7e-76 254.3 0.0 1.2e-75 253.5 0.0 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.19 BAD85675.1 - 1.7e-34 118.4 3.8 3.9e-34 117.2 1.1 2.8 3 0 0 3 3 2 1 Signal peptide binding domain SRP54_N PF02881.19 BAD85675.1 - 1.3e-20 73.4 2.9 1.3e-20 73.4 2.9 2.5 2 0 0 2 2 2 1 SRP54-type protein, helical bundle domain CbiA PF01656.23 BAD85675.1 - 1e-06 28.9 0.0 2.9e-06 27.4 0.0 1.9 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_22 PF13401.6 BAD85675.1 - 9.2e-06 26.0 0.2 9e-05 22.8 0.0 2.6 2 0 0 2 2 2 1 AAA domain cobW PF02492.19 BAD85675.1 - 3.9e-05 23.3 0.5 0.26 10.9 0.0 2.7 3 0 0 3 3 3 2 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.14 BAD85675.1 - 8.3e-05 22.5 0.8 0.00022 21.1 0.1 2.0 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B Zeta_toxin PF06414.12 BAD85675.1 - 0.00018 20.8 0.1 0.00086 18.6 0.0 2.2 2 1 0 2 2 2 1 Zeta toxin Glyco_transf_4 PF13439.6 BAD85675.1 - 0.00026 21.0 0.0 0.00089 19.3 0.0 1.9 2 0 0 2 2 2 1 Glycosyltransferase Family 4 MeaB PF03308.16 BAD85675.1 - 0.0004 19.5 0.7 0.0016 17.5 0.1 2.1 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB NTPase_1 PF03266.15 BAD85675.1 - 0.0004 20.3 2.2 0.0034 17.3 0.1 2.7 2 0 0 2 2 2 1 NTPase AAA_33 PF13671.6 BAD85675.1 - 0.00042 20.5 0.0 0.0012 19.0 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 BAD85675.1 - 0.00042 20.7 0.1 0.0022 18.4 0.0 2.1 1 1 1 2 2 2 1 AAA ATPase domain LpxK PF02606.14 BAD85675.1 - 0.0006 19.0 0.4 0.0047 16.1 0.2 2.3 2 0 0 2 2 2 1 Tetraacyldisaccharide-1-P 4'-kinase AAA_17 PF13207.6 BAD85675.1 - 0.0018 18.7 2.5 0.0031 18.0 0.5 2.5 2 1 0 2 2 1 1 AAA domain AAA_30 PF13604.6 BAD85675.1 - 0.0023 17.7 2.0 0.0063 16.2 0.2 2.5 2 1 0 2 2 2 1 AAA domain IMPDH PF00478.25 BAD85675.1 - 0.0023 17.0 0.3 0.0057 15.7 0.3 1.6 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain ATP_bind_1 PF03029.17 BAD85675.1 - 0.0028 17.5 0.3 0.0087 15.9 0.1 2.0 2 0 0 2 2 1 1 Conserved hypothetical ATP binding protein APS_kinase PF01583.20 BAD85675.1 - 0.0028 17.6 0.2 0.019 14.8 0.0 2.2 2 0 0 2 2 2 1 Adenylylsulphate kinase KTI12 PF08433.10 BAD85675.1 - 0.0049 16.4 1.7 0.035 13.5 0.0 2.8 3 0 0 3 3 3 1 Chromatin associated protein KTI12 6PF2K PF01591.18 BAD85675.1 - 0.0084 15.4 0.1 0.025 13.9 0.1 1.9 1 1 0 1 1 1 1 6-phosphofructo-2-kinase AAA_18 PF13238.6 BAD85675.1 - 0.0088 16.6 0.1 0.05 14.2 0.1 2.4 1 1 0 1 1 1 1 AAA domain Fe-ADH PF00465.19 BAD85675.1 - 0.011 14.6 0.0 0.024 13.4 0.0 1.5 1 0 0 1 1 1 0 Iron-containing alcohol dehydrogenase Thymidylate_kin PF02223.17 BAD85675.1 - 0.013 15.2 2.0 0.018 14.7 0.1 2.1 2 0 0 2 2 1 0 Thymidylate kinase AAA_31 PF13614.6 BAD85675.1 - 0.015 15.2 0.4 0.078 12.9 0.1 2.3 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 BAD85675.1 - 0.017 15.5 0.1 0.38 11.2 0.0 3.1 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) ResIII PF04851.15 BAD85675.1 - 0.02 14.9 1.4 0.67 9.9 0.0 2.9 3 0 0 3 3 2 0 Type III restriction enzyme, res subunit ParA PF10609.9 BAD85675.1 - 0.023 14.2 0.0 0.05 13.1 0.0 1.6 1 0 0 1 1 1 0 NUBPL iron-transfer P-loop NTPase MMR_HSR1 PF01926.23 BAD85675.1 - 0.027 14.6 1.3 0.17 12.0 0.2 2.9 3 1 0 3 3 2 0 50S ribosome-binding GTPase YjeF_N PF03853.15 BAD85675.1 - 0.029 14.3 0.7 0.54 10.1 0.1 2.7 2 1 0 2 2 1 0 YjeF-related protein N-terminus RNase_Zc3h12a PF11977.8 BAD85675.1 - 0.035 13.9 0.0 3.5 7.4 0.0 2.6 2 0 0 2 2 2 0 Zc3h12a-like Ribonuclease NYN domain Glyco_trans_4_2 PF13477.6 BAD85675.1 - 0.048 13.7 0.6 0.85 9.6 0.0 2.8 3 0 0 3 3 3 0 Glycosyl transferase 4-like CLP1_P PF16575.5 BAD85675.1 - 0.053 13.3 0.1 11 5.8 0.0 2.6 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_26 PF13500.6 BAD85675.1 - 0.054 13.3 0.5 0.62 9.9 0.2 2.4 2 0 0 2 2 2 0 AAA domain TrwB_AAD_bind PF10412.9 BAD85675.1 - 0.061 12.2 0.0 0.14 11.0 0.0 1.6 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_8 PF12780.7 BAD85675.1 - 0.072 12.4 0.1 0.62 9.3 0.0 2.3 2 0 0 2 2 2 0 P-loop containing dynein motor region D4 Glyco_trans_4_4 PF13579.6 BAD85675.1 - 0.079 13.4 0.1 0.22 11.9 0.0 1.8 2 0 0 2 2 1 0 Glycosyl transferase 4-like domain NACHT PF05729.12 BAD85675.1 - 0.13 12.2 1.3 0.23 11.4 0.3 2.1 2 1 0 2 2 1 0 NACHT domain ASL_C PF08328.11 BAD85675.1 - 0.19 11.8 5.8 31 4.7 0.3 3.4 3 0 0 3 3 3 0 Adenylosuccinate lyase C-terminal PFOR_II PF17147.4 BAD85675.1 - 0.26 11.6 1.4 3.8 7.9 0.0 3.3 3 1 1 5 5 4 0 Pyruvate:ferredoxin oxidoreductase core domain II AsnC_trans_reg PF01037.21 BAD85676.1 - 1.8e-16 59.9 0.3 2e-16 59.7 0.3 1.0 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain BCA_ABC_TP_C PF12399.8 BAD85676.1 - 0.011 15.6 0.8 0.021 14.8 0.8 1.5 1 0 0 1 1 1 0 Branched-chain amino acid ATP-binding cassette transporter GYD PF08734.11 BAD85676.1 - 0.032 14.2 0.0 0.037 14.0 0.0 1.2 1 0 0 1 1 1 0 GYD domain CxxCxxCC PF03692.15 BAD85677.1 - 5.6e-19 68.6 1.5 8.2e-19 68.1 1.5 1.3 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain SapC PF07277.11 BAD85677.1 - 0.017 14.7 0.0 0.021 14.4 0.0 1.1 1 0 0 1 1 1 0 SapC DUF3109 PF11307.8 BAD85677.1 - 0.21 11.4 3.7 0.7 9.7 3.7 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF3109) Pribosyltran PF00156.27 BAD85678.1 - 3.7e-13 49.3 0.1 6.2e-13 48.6 0.1 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HTH_3 PF01381.22 BAD85678.1 - 1.9e-05 24.6 0.4 4.1e-05 23.6 0.4 1.5 1 0 0 1 1 1 1 Helix-turn-helix PRTase_2 PF15609.6 BAD85678.1 - 0.0059 16.1 0.0 0.0077 15.8 0.0 1.3 1 1 0 1 1 1 1 Phosphoribosyl transferase HTH_24 PF13412.6 BAD85678.1 - 0.026 14.1 0.5 0.068 12.7 0.5 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_26 PF13443.6 BAD85678.1 - 0.1 13.0 0.1 0.21 12.1 0.1 1.5 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain IGPD PF00475.18 BAD85678.1 - 0.13 12.6 0.0 0.19 12.0 0.0 1.3 1 0 0 1 1 1 0 Imidazoleglycerol-phosphate dehydratase HTH_24 PF13412.6 BAD85680.1 - 2.8e-19 68.4 0.2 9.8e-19 66.7 0.3 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 BAD85680.1 - 8.9e-17 60.6 0.2 1.5e-16 59.9 0.2 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.21 BAD85680.1 - 1.3e-12 47.5 0.0 1.9e-12 47.0 0.0 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_23 PF13384.6 BAD85680.1 - 1.2e-08 34.5 0.1 2.2e-08 33.7 0.1 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_11 PF08279.12 BAD85680.1 - 3.7e-08 33.2 0.0 7.4e-08 32.2 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.7 BAD85680.1 - 2.9e-07 30.4 0.0 4.2e-07 29.9 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_28 PF13518.6 BAD85680.1 - 1.2e-06 28.6 0.0 1.9e-06 27.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 BAD85680.1 - 3.1e-06 26.8 0.0 5.6e-06 25.9 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_5 PF01022.20 BAD85680.1 - 1.2e-05 25.0 0.1 2.1e-05 24.3 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_38 PF13936.6 BAD85680.1 - 1.5e-05 24.7 0.3 3.1e-05 23.6 0.3 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 BAD85680.1 - 3.2e-05 23.8 0.0 6.5e-05 22.8 0.0 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 BAD85680.1 - 5.2e-05 23.1 0.3 0.00012 21.9 0.3 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 BAD85680.1 - 0.00035 20.5 0.0 0.0011 18.9 0.0 1.8 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain MarR_2 PF12802.7 BAD85680.1 - 0.00042 20.1 0.0 0.00078 19.3 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_29 PF13551.6 BAD85680.1 - 0.00054 19.9 0.0 0.00099 19.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix GntR PF00392.21 BAD85680.1 - 0.00055 19.5 0.3 0.00099 18.7 0.3 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_IclR PF09339.10 BAD85680.1 - 0.00075 19.2 0.0 0.0015 18.3 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_30 PF13556.6 BAD85680.1 - 0.0018 18.1 0.0 0.0029 17.4 0.0 1.3 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain TetR_N PF00440.23 BAD85680.1 - 0.0019 18.0 0.1 0.0041 16.9 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_36 PF13730.6 BAD85680.1 - 0.0023 17.9 0.0 0.0039 17.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.12 BAD85680.1 - 0.0024 17.6 0.0 0.0044 16.7 0.0 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain PadR PF03551.14 BAD85680.1 - 0.0033 17.4 0.1 0.082 12.9 0.0 2.3 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family RepL PF05732.11 BAD85680.1 - 0.004 16.6 0.1 0.016 14.7 0.0 1.9 2 1 0 2 2 2 1 Firmicute plasmid replication protein (RepL) HTH_41 PF14502.6 BAD85680.1 - 0.0065 16.1 0.1 0.023 14.4 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 BAD85680.1 - 0.0089 15.4 0.0 0.015 14.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 Sigma70_r4 PF04545.16 BAD85680.1 - 0.011 15.3 0.1 0.018 14.5 0.1 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_50 PF18024.1 BAD85680.1 - 0.011 15.3 0.0 0.023 14.3 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_34 PF13601.6 BAD85680.1 - 0.014 15.5 0.1 0.04 14.1 0.0 1.7 2 0 0 2 2 2 0 Winged helix DNA-binding domain Trp_repressor PF01371.19 BAD85680.1 - 0.018 15.2 0.1 0.18 12.0 0.0 2.1 2 0 0 2 2 2 0 Trp repressor protein HTH_40 PF14493.6 BAD85680.1 - 0.019 15.4 0.2 0.03 14.8 0.2 1.4 1 1 0 1 1 1 0 Helix-turn-helix domain Fe_dep_repress PF01325.19 BAD85680.1 - 0.019 15.1 0.0 0.038 14.2 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain TnsD PF15978.5 BAD85680.1 - 0.022 13.8 0.0 0.031 13.3 0.0 1.2 1 0 0 1 1 1 0 Tn7-like transposition protein D HTH_Mga PF08280.11 BAD85680.1 - 0.027 14.5 0.0 0.049 13.7 0.0 1.4 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_10 PF04967.12 BAD85680.1 - 0.032 14.0 0.0 0.066 13.0 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain HTH_32 PF13565.6 BAD85680.1 - 0.062 13.9 0.1 0.43 11.2 0.0 2.3 2 1 1 3 3 2 0 Homeodomain-like domain Crp PF00325.20 BAD85680.1 - 0.064 12.9 0.1 0.14 11.8 0.1 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, crp family GYD PF08734.11 BAD85680.1 - 0.078 12.9 0.1 0.28 11.1 0.1 1.8 2 0 0 2 2 2 0 GYD domain LexA_DNA_bind PF01726.16 BAD85680.1 - 0.08 12.7 0.0 0.16 11.7 0.0 1.6 1 0 0 1 1 1 0 LexA DNA binding domain FUR PF01475.19 BAD85680.1 - 0.15 12.2 0.1 0.42 10.8 0.0 1.8 2 0 0 2 2 1 0 Ferric uptake regulator family RPA_C PF08784.11 BAD85680.1 - 0.2 12.3 0.0 0.95 10.2 0.0 1.9 2 0 0 2 2 2 0 Replication protein A C terminal Metallophos_2 PF12850.7 BAD85681.1 - 0.0036 17.5 0.1 0.057 13.6 0.1 2.1 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain ubiquitin PF00240.23 BAD85681.1 - 0.051 13.3 0.3 0.096 12.5 0.3 1.5 1 0 0 1 1 1 0 Ubiquitin family FUN14 PF04930.15 BAD85682.1 - 1.9e-13 50.6 8.7 3.2e-13 49.9 8.7 1.3 1 1 0 1 1 1 1 FUN14 family SPC12 PF06645.13 BAD85682.1 - 0.03 14.4 2.0 0.03 14.4 2.0 2.0 2 0 0 2 2 2 0 Microsomal signal peptidase 12 kDa subunit (SPC12) FeoB_C PF07664.12 BAD85682.1 - 0.77 9.5 2.9 7.1 6.4 0.2 2.3 1 1 1 2 2 2 0 Ferrous iron transport protein B C terminus PadR PF03551.14 BAD85683.1 - 4.8e-19 68.1 0.9 6.5e-19 67.7 0.9 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family RTP PF02334.16 BAD85683.1 - 1.9e-05 25.3 1.5 2.4e-05 25.0 1.5 1.2 1 0 0 1 1 1 1 Replication terminator protein HTH_34 PF13601.6 BAD85683.1 - 0.00035 20.7 0.1 0.00055 20.1 0.1 1.4 1 1 0 1 1 1 1 Winged helix DNA-binding domain HTH_27 PF13463.6 BAD85683.1 - 0.00076 19.9 0.0 0.0013 19.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF3116 PF11313.8 BAD85683.1 - 0.00095 19.0 1.6 0.0016 18.2 1.6 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF3116) Replic_Relax PF13814.6 BAD85683.1 - 0.0014 18.7 0.0 0.0016 18.5 0.0 1.1 1 0 0 1 1 1 1 Replication-relaxation Mrr_N PF14338.6 BAD85683.1 - 0.0016 18.6 0.0 0.44 10.7 0.0 2.4 1 1 0 1 1 1 1 Mrr N-terminal domain DUF505 PF04458.12 BAD85683.1 - 0.013 13.9 1.8 0.015 13.7 1.8 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF505) HTH_5 PF01022.20 BAD85683.1 - 0.014 15.3 0.0 0.11 12.3 0.0 2.2 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.19 BAD85683.1 - 0.017 15.3 0.5 0.028 14.6 0.0 1.7 2 0 0 2 2 1 0 Iron dependent repressor, N-terminal DNA binding domain DUF4364 PF14277.6 BAD85683.1 - 0.044 13.5 0.1 0.074 12.8 0.1 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4364) MarR PF01047.22 BAD85683.1 - 0.059 13.3 0.0 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 MarR family DUF2513 PF10711.9 BAD85683.1 - 0.088 13.1 0.0 0.12 12.7 0.0 1.3 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) zinc_ribbon_2 PF13240.6 BAD85684.1 - 9.6e-05 22.0 3.2 0.00014 21.5 3.2 1.2 1 0 0 1 1 1 1 zinc-ribbon domain Ribosomal_L40e PF01020.17 BAD85684.1 - 0.00078 19.3 3.6 0.00093 19.0 3.6 1.2 1 0 0 1 1 1 1 Ribosomal L40e family DZR PF12773.7 BAD85684.1 - 0.00097 19.1 0.4 0.001 19.1 0.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 BAD85684.1 - 0.0045 16.3 2.2 0.006 16.0 2.2 1.2 1 0 0 1 1 1 1 zinc-ribbon domain UPF0547 PF10571.9 BAD85684.1 - 0.012 15.7 0.8 0.018 15.1 0.8 1.3 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 DNA_RNApol_7kD PF03604.13 BAD85684.1 - 0.015 15.0 3.8 0.029 14.0 3.8 1.4 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Toxin_5 PF05294.13 BAD85684.1 - 0.019 15.4 2.4 0.026 14.9 2.4 1.2 1 0 0 1 1 1 0 Scorpion short toxin RNA_POL_M_15KD PF02150.16 BAD85684.1 - 0.23 11.4 3.1 1 9.3 0.7 2.1 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit zinc_ribbon_13 PF09855.9 BAD85684.1 - 0.26 11.5 1.7 9.4 6.5 0.3 2.0 1 1 1 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Ribosomal_S2 PF00318.20 BAD85685.1 - 4.2e-27 94.8 0.1 7.6e-14 51.5 0.2 2.1 1 1 1 2 2 2 2 Ribosomal protein S2 Enolase_N PF03952.16 BAD85686.1 - 7.1e-24 84.5 0.1 1.9e-22 79.8 0.1 2.3 1 1 0 1 1 1 1 Enolase, N-terminal domain Enolase_C PF00113.22 BAD85686.1 - 1.3e-07 31.2 0.0 2.2e-07 30.4 0.0 1.3 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain RNA_pol_Rpb6 PF01192.22 BAD85687.1 - 2.1e-11 43.6 0.1 2.4e-11 43.4 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb6 RNA_pol_N PF01194.17 BAD85688.1 - 3.9e-30 103.9 0.2 4.3e-30 103.8 0.2 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Chordopox_RPO7 PF05864.12 BAD85688.1 - 0.0041 17.3 0.6 0.0069 16.6 0.6 1.4 1 1 0 1 1 1 1 Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7) Ribosomal_S9 PF00380.19 BAD85689.1 - 1.7e-30 106.0 0.7 2e-30 105.8 0.7 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 Ribosomal_L13 PF00572.18 BAD85690.1 - 1.1e-13 51.6 0.3 1.8e-11 44.3 0.3 2.2 1 1 0 1 1 1 1 Ribosomal protein L13 Ribosomal_L18 PF17135.4 BAD85691.1 - 5.6e-15 55.2 0.0 6.9e-15 54.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein 60S L18 and 50S L18e Ribosomal_L27A PF00828.19 BAD85691.1 - 2e-07 31.7 0.8 4.5e-07 30.6 0.8 1.7 1 1 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A RNA_pol_A_bac PF01000.26 BAD85692.1 - 7.8e-28 97.1 0.0 1.6e-27 96.1 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.24 BAD85692.1 - 3.1e-18 65.0 0.0 4.5e-18 64.5 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Ribosomal_S11 PF00411.19 BAD85693.1 - 2.7e-48 162.9 1.4 3.9e-48 162.4 1.4 1.2 1 0 0 1 1 1 1 Ribosomal protein S11 Pilus_CpaD PF09476.10 BAD85693.1 - 0.15 11.8 0.1 0.2 11.3 0.1 1.2 1 0 0 1 1 1 0 Pilus biogenesis CpaD protein (pilus_cpaD) S4 PF01479.25 BAD85694.1 - 4.5e-17 61.5 0.2 4.5e-17 61.5 0.2 2.4 3 0 0 3 3 3 1 S4 domain PEARLI-4 PF05278.12 BAD85694.1 - 0.044 13.4 2.0 0.064 12.8 2.0 1.2 1 0 0 1 1 1 0 Arabidopsis phospholipase-like protein (PEARLI 4) Transglut_core2 PF13369.6 BAD85694.1 - 0.095 12.3 2.7 0.079 12.5 1.2 1.6 2 0 0 2 2 2 0 Transglutaminase-like superfamily Ribosomal_S13 PF00416.22 BAD85695.1 - 3.8e-42 143.7 0.1 4.5e-42 143.5 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S13/S18 H2TH PF06831.14 BAD85695.1 - 0.076 13.0 0.0 0.11 12.5 0.0 1.2 1 0 0 1 1 1 0 Formamidopyrimidine-DNA glycosylase H2TH domain MTS PF05175.14 BAD85696.1 - 4.9e-44 149.8 0.0 5.6e-44 149.7 0.0 1.0 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 BAD85696.1 - 7.7e-11 41.9 0.0 9.8e-11 41.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_31 PF13847.6 BAD85696.1 - 2.3e-09 37.2 0.0 2.9e-09 36.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 BAD85696.1 - 1.4e-08 35.3 0.0 2.2e-08 34.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 BAD85696.1 - 3.2e-06 26.9 0.0 4.2e-06 26.5 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_23 PF13489.6 BAD85696.1 - 7.4e-06 25.9 0.0 1.1e-05 25.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 BAD85696.1 - 7.5e-06 26.5 0.0 1.4e-05 25.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 BAD85696.1 - 1.4e-05 25.0 0.0 2e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 BAD85696.1 - 1.8e-05 24.2 0.0 2.3e-05 23.8 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_12 PF08242.12 BAD85696.1 - 2.8e-05 24.8 0.0 4.5e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_16 PF10294.9 BAD85696.1 - 0.00014 21.6 0.0 0.00021 21.1 0.0 1.2 1 0 0 1 1 1 1 Lysine methyltransferase PCMT PF01135.19 BAD85696.1 - 0.00018 21.3 0.0 0.00033 20.5 0.0 1.4 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) tRNA_U5-meth_tr PF05958.11 BAD85696.1 - 0.0002 20.5 0.0 0.00028 20.0 0.0 1.1 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase TehB PF03848.14 BAD85696.1 - 0.00036 20.0 0.0 0.00047 19.6 0.0 1.1 1 0 0 1 1 1 1 Tellurite resistance protein TehB Ubie_methyltran PF01209.18 BAD85696.1 - 0.0062 15.9 0.0 0.0071 15.7 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Met_10 PF02475.16 BAD85696.1 - 0.008 15.9 0.0 0.01 15.6 0.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein UPF0020 PF01170.18 BAD85696.1 - 0.024 14.3 0.0 0.033 13.9 0.0 1.4 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 AviRa PF11599.8 BAD85696.1 - 0.047 13.2 0.0 0.064 12.7 0.0 1.2 1 0 0 1 1 1 0 RRNA methyltransferase AviRa N6_Mtase PF02384.16 BAD85696.1 - 0.055 12.7 0.0 0.076 12.3 0.0 1.2 1 0 0 1 1 1 0 N-6 DNA Methylase Methyltransf_15 PF09445.10 BAD85696.1 - 0.11 12.1 0.0 0.13 11.8 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase DUF3482 PF11981.8 BAD85697.1 - 0.025 14.0 0.0 0.042 13.2 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3482) DUF3533 PF12051.8 BAD85697.1 - 2.6 6.9 7.6 4.6 6.1 7.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3533) TruB_N PF01509.18 BAD85698.1 - 1.5e-25 90.3 0.2 8.5e-22 78.1 0.2 3.2 1 1 0 1 1 1 1 TruB family pseudouridylate synthase (N terminal domain) TruB_C_2 PF16198.5 BAD85698.1 - 3.6e-24 84.7 0.0 1.1e-23 83.2 0.0 1.8 2 0 0 2 2 2 1 tRNA pseudouridylate synthase B C-terminal domain PUA PF01472.20 BAD85698.1 - 1.4e-20 73.0 0.8 4.1e-20 71.5 0.8 1.8 1 0 0 1 1 1 1 PUA domain DKCLD PF08068.12 BAD85698.1 - 1.1e-17 63.9 0.1 2.4e-17 62.8 0.1 1.6 1 0 0 1 1 1 1 DKCLD (NUC011) domain UPF0113 PF03657.13 BAD85698.1 - 0.00023 21.4 0.1 0.00074 19.7 0.0 1.9 2 0 0 2 2 2 1 UPF0113 PUA domain SIR2_2 PF13289.6 BAD85698.1 - 0.077 13.1 0.0 0.17 12.0 0.0 1.5 1 0 0 1 1 1 0 SIR2-like domain HicA_toxin PF07927.12 BAD85699.1 - 2.9e-15 56.0 0.5 4.1e-15 55.5 0.5 1.2 1 0 0 1 1 1 1 HicA toxin of bacterial toxin-antitoxin, HicB_lk_antitox PF15919.5 BAD85700.1 - 8.3e-06 25.9 0.0 8.5e-06 25.9 0.0 1.1 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system VapB_antitoxin PF09957.9 BAD85700.1 - 0.038 13.9 1.0 0.25 11.3 0.1 2.1 2 0 0 2 2 2 0 Bacterial antitoxin of type II TA system, VapB SHNi-TPR PF10516.9 BAD85700.1 - 0.042 13.3 0.2 0.076 12.5 0.1 1.4 1 1 0 1 1 1 0 SHNi-TPR PHD_like PF12910.7 BAD85700.1 - 0.043 13.8 0.1 0.047 13.7 0.1 1.1 1 0 0 1 1 1 0 Antitoxin of toxin-antitoxin, RelE / RelB, TA system BcrAD_BadFG PF01869.20 BAD85700.1 - 0.1 12.1 0.1 0.11 11.9 0.1 1.0 1 0 0 1 1 1 0 BadF/BadG/BcrA/BcrD ATPase family ApoL PF05461.11 BAD85700.1 - 0.14 11.5 0.0 0.15 11.3 0.0 1.1 1 0 0 1 1 1 0 Apolipoprotein L RHH_3 PF12651.7 BAD85700.1 - 0.42 10.6 2.2 1.6 8.7 0.5 2.3 1 1 1 2 2 2 0 Ribbon-helix-helix domain adh_short PF00106.25 BAD85701.1 - 1.1e-42 145.8 0.0 1.3e-42 145.5 0.0 1.0 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 BAD85701.1 - 1.2e-24 87.2 0.0 1.6e-24 86.8 0.0 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 BAD85701.1 - 2e-11 44.1 0.0 2.4e-11 43.9 0.0 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 BAD85701.1 - 5e-08 32.7 0.0 1.5e-07 31.2 0.0 1.9 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 BAD85701.1 - 5.6e-08 32.9 0.0 1.4e-07 31.5 0.0 1.6 2 0 0 2 2 2 1 NAD(P)H-binding Sacchrp_dh_NADP PF03435.18 BAD85701.1 - 4.5e-06 26.9 0.0 0.00012 22.3 0.0 2.1 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain GDP_Man_Dehyd PF16363.5 BAD85701.1 - 2.1e-05 24.1 0.0 4e-05 23.2 0.0 1.4 2 0 0 2 2 2 1 GDP-mannose 4,6 dehydratase F420_oxidored PF03807.17 BAD85701.1 - 0.00016 22.1 0.0 0.00033 21.2 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_4 PF07993.12 BAD85701.1 - 0.0003 20.0 0.1 0.0005 19.3 0.1 1.6 1 1 0 1 1 1 1 Male sterility protein TrkA_N PF02254.18 BAD85701.1 - 0.00058 20.1 0.0 0.0011 19.2 0.0 1.5 1 1 0 1 1 1 1 TrkA-N domain Polysacc_synt_2 PF02719.15 BAD85701.1 - 0.00074 18.7 0.0 0.00093 18.4 0.0 1.1 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein NmrA PF05368.13 BAD85701.1 - 0.0017 17.9 0.0 0.0024 17.5 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family RmlD_sub_bind PF04321.17 BAD85701.1 - 0.0024 17.1 0.0 0.0029 16.7 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain ApbA PF02558.16 BAD85701.1 - 0.018 14.7 0.0 0.054 13.1 0.0 1.8 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA 3Beta_HSD PF01073.19 BAD85701.1 - 0.02 13.9 0.0 0.029 13.4 0.0 1.2 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family DUF1776 PF08643.10 BAD85701.1 - 0.029 13.7 0.0 0.17 11.2 0.0 1.9 1 1 0 1 1 1 0 Fungal family of unknown function (DUF1776) Shikimate_DH PF01488.20 BAD85701.1 - 0.053 13.6 0.0 0.077 13.1 0.0 1.2 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase 2-Hacid_dh_C PF02826.19 BAD85701.1 - 0.16 11.3 0.0 0.22 10.9 0.0 1.2 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Ribosomal_L14e PF01929.17 BAD85702.1 - 0.00099 19.6 0.0 0.0017 18.8 0.0 1.4 2 0 0 2 2 2 1 Ribosomal protein L14 KOW PF00467.29 BAD85702.1 - 0.0038 17.1 3.8 0.0065 16.4 3.8 1.4 1 0 0 1 1 1 1 KOW motif XisI PF08869.11 BAD85702.1 - 0.15 12.4 0.0 0.17 12.3 0.0 1.1 1 0 0 1 1 1 0 XisI protein Cytidylate_kin2 PF13189.6 BAD85703.1 - 1.1e-27 97.4 1.3 6.3e-26 91.6 1.3 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.6 BAD85703.1 - 3.6e-16 59.9 0.2 5e-16 59.4 0.2 1.2 1 0 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 BAD85703.1 - 4.6e-16 59.2 3.1 9.4e-10 38.6 0.9 2.1 1 1 1 2 2 2 2 Cytidylate kinase AAA_17 PF13207.6 BAD85703.1 - 8.4e-14 52.2 0.1 1.7e-13 51.2 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 BAD85703.1 - 0.00011 22.4 0.3 0.0011 19.1 0.3 2.0 1 1 0 1 1 1 1 AAA domain ADK PF00406.22 BAD85703.1 - 0.00013 22.1 0.0 0.00022 21.3 0.0 1.4 1 0 0 1 1 1 1 Adenylate kinase CoaE PF01121.20 BAD85703.1 - 0.00021 21.0 0.4 0.6 9.8 0.0 2.1 1 1 1 2 2 2 2 Dephospho-CoA kinase dNK PF01712.19 BAD85703.1 - 0.00081 19.3 1.0 0.092 12.6 0.0 2.8 1 1 1 2 2 2 1 Deoxynucleoside kinase SinI PF08671.10 BAD85703.1 - 0.0038 17.0 0.5 0.16 11.8 0.1 2.5 2 0 0 2 2 2 1 Anti-repressor SinI AAA_28 PF13521.6 BAD85703.1 - 0.0048 17.2 0.1 0.012 15.9 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 BAD85703.1 - 0.026 14.8 0.0 0.034 14.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 BAD85703.1 - 0.03 13.5 0.0 0.039 13.1 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain SKI PF01202.22 BAD85703.1 - 0.031 14.4 0.5 0.15 12.2 0.5 1.9 1 1 0 1 1 1 0 Shikimate kinase PRK PF00485.18 BAD85703.1 - 0.08 12.7 0.2 0.4 10.4 0.1 2.0 1 1 1 2 2 2 0 Phosphoribulokinase / Uridine kinase family Ribosomal_L34e PF01199.18 BAD85704.1 - 3e-24 85.1 4.0 3.4e-24 85.0 4.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L34e DZR PF12773.7 BAD85704.1 - 0.00055 19.9 0.4 0.00074 19.5 0.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon Sgf11 PF08209.11 BAD85704.1 - 0.018 14.6 1.6 2.7 7.6 0.1 2.3 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Ima1_N PF09779.9 BAD85704.1 - 0.09 13.6 0.6 0.13 13.1 0.6 1.4 1 1 0 1 1 1 0 Ima1 N-terminal domain EMC3_TMCO1 PF01956.16 BAD85705.1 - 2.6e-30 105.4 5.4 3.1e-30 105.1 5.4 1.0 1 0 0 1 1 1 1 Integral membrane protein EMC3/TMCO1-like 60KD_IMP PF02096.20 BAD85705.1 - 7.1e-09 35.8 1.7 8.8e-09 35.5 1.7 1.2 1 0 0 1 1 1 1 60Kd inner membrane protein DUF2232 PF09991.9 BAD85705.1 - 9.5e-05 21.7 0.5 0.00011 21.5 0.5 1.1 1 0 0 1 1 1 1 Predicted membrane protein (DUF2232) DUF4199 PF13858.6 BAD85705.1 - 0.00018 21.9 2.2 0.00018 21.9 2.2 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF4199) DUF2208 PF09973.9 BAD85705.1 - 0.0015 18.2 5.7 0.002 17.8 5.7 1.3 1 1 0 1 1 1 1 Predicted membrane protein (DUF2208) NAGLU_C PF12972.7 BAD85705.1 - 0.029 13.9 1.7 0.04 13.5 1.7 1.1 1 0 0 1 1 1 0 Alpha-N-acetylglucosaminidase (NAGLU) C-terminal domain Connexin PF00029.19 BAD85705.1 - 0.056 13.2 0.2 0.073 12.8 0.2 1.1 1 0 0 1 1 1 0 Connexin COX16 PF14138.6 BAD85705.1 - 0.081 13.4 1.4 0.15 12.5 1.4 1.5 1 0 0 1 1 1 0 Cytochrome c oxidase assembly protein COX16 TMEM40 PF15817.5 BAD85705.1 - 0.25 11.1 1.6 1 9.1 1.6 1.9 1 1 0 1 1 1 0 Transmembrane protein 40 family LapA_dom PF06305.11 BAD85705.1 - 1.3 8.9 6.0 0.25 11.2 0.7 2.6 2 1 1 3 3 3 0 Lipopolysaccharide assembly protein A domain OmpH PF03938.14 BAD85705.1 - 2.9 8.2 14.4 4.1 7.7 14.4 1.1 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) AAA_17 PF13207.6 BAD85706.1 - 2.5e-36 125.1 0.1 3.6e-36 124.6 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 BAD85706.1 - 3.8e-08 34.0 0.2 1.2e-07 32.3 0.0 1.7 1 1 1 2 2 2 1 AAA domain AAA PF00004.29 BAD85706.1 - 0.0012 19.3 0.1 0.0058 17.1 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.6 BAD85706.1 - 0.0032 17.5 0.2 0.012 15.6 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_5 PF07728.14 BAD85706.1 - 0.0037 17.3 0.6 0.0092 16.0 0.1 2.0 1 1 1 2 2 2 1 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 BAD85706.1 - 0.0064 16.7 0.1 0.011 16.0 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 BAD85706.1 - 0.0085 16.3 0.1 0.015 15.5 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 BAD85706.1 - 0.0088 16.4 0.4 0.025 15.0 0.4 1.9 1 1 0 1 1 1 1 AAA ATPase domain NB-ARC PF00931.22 BAD85706.1 - 0.021 14.0 0.0 0.03 13.5 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain MeaB PF03308.16 BAD85706.1 - 0.022 13.7 0.1 0.047 12.7 0.1 1.5 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB NTPase_1 PF03266.15 BAD85706.1 - 0.022 14.7 1.8 0.029 14.3 0.4 1.9 2 1 1 3 3 3 0 NTPase Viral_helicase1 PF01443.18 BAD85706.1 - 0.031 14.0 0.0 0.044 13.5 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase APS_kinase PF01583.20 BAD85706.1 - 0.035 14.0 0.1 0.34 10.8 0.0 2.2 2 0 0 2 2 2 0 Adenylylsulphate kinase KTI12 PF08433.10 BAD85706.1 - 0.036 13.5 0.0 0.053 13.0 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 Zeta_toxin PF06414.12 BAD85706.1 - 0.077 12.3 1.9 0.47 9.7 0.1 2.2 2 1 0 2 2 2 0 Zeta toxin AAA_3 PF07726.11 BAD85706.1 - 0.1 12.5 0.1 0.39 10.6 0.0 1.9 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 BAD85706.1 - 0.1 12.9 2.0 0.3 11.4 2.0 2.0 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 BAD85706.1 - 0.11 12.5 2.0 0.34 11.0 2.0 2.1 1 1 0 1 1 1 0 50S ribosome-binding GTPase PAS_9 PF13426.7 BAD85706.1 - 0.13 12.5 0.0 0.22 11.8 0.0 1.5 1 0 0 1 1 1 0 PAS domain SecY PF00344.20 BAD85707.1 - 1.7e-70 237.7 15.7 2.1e-70 237.4 15.7 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.9 BAD85707.1 - 2.6e-11 43.2 0.6 2.6e-11 43.2 0.6 2.3 2 0 0 2 2 2 1 Plug domain of Sec61p Ribosomal_L27A PF00828.19 BAD85708.1 - 8.5e-20 71.7 0.1 1.3e-19 71.1 0.1 1.3 1 0 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Ribosomal_L30 PF00327.20 BAD85709.1 - 4.4e-17 61.7 0.1 9.2e-17 60.7 0.1 1.6 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_S5 PF00333.20 BAD85710.1 - 1.8e-21 75.9 0.8 3.9e-21 74.8 0.8 1.5 1 0 0 1 1 1 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.15 BAD85710.1 - 3.6e-21 74.4 0.2 1.1e-20 72.9 0.1 1.9 1 1 1 2 2 2 1 Ribosomal protein S5, C-terminal domain Ribosomal_L5e PF17144.4 BAD85711.1 - 1.8e-27 96.3 0.1 1.4e-15 57.7 0.1 2.4 1 1 1 2 2 2 2 Ribosomal large subunit proteins 60S L5, and 50S L18 Ribosomal_L18_c PF14204.6 BAD85711.1 - 1.2e-11 45.4 0.6 1.2e-11 45.4 0.6 1.6 2 0 0 2 2 2 1 Ribosomal L18 C-terminal region Ribosomal_L18p PF00861.22 BAD85711.1 - 6.1e-10 39.5 0.0 9e-10 38.9 0.0 1.3 1 0 0 1 1 1 1 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Ribosomal_L19e PF01280.20 BAD85712.1 - 1.7e-58 196.8 11.6 1.9e-58 196.6 11.6 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e LpxI_N PF17930.1 BAD85712.1 - 0.0094 15.8 0.3 0.028 14.3 0.1 1.8 1 1 1 2 2 2 1 LpxI N-terminal domain DUF1707 PF08044.11 BAD85712.1 - 0.026 14.6 0.4 1.5 8.9 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1707) Ribosomal_L32e PF01655.18 BAD85713.1 - 1.7e-41 141.0 0.2 2.1e-41 140.7 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L32 Ribosomal_L6 PF00347.23 BAD85714.1 - 1e-36 125.4 12.7 1.4e-19 70.5 4.7 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 YbbR PF07949.12 BAD85714.1 - 0.00073 19.8 2.8 0.86 10.0 0.1 3.2 3 0 0 3 3 3 2 YbbR-like protein TubC_N PF18563.1 BAD85714.1 - 0.012 15.5 0.0 0.052 13.5 0.0 2.0 1 1 1 2 2 2 0 TubC N-terminal docking domain DUF4469 PF14734.6 BAD85714.1 - 0.02 15.0 0.3 0.46 10.7 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4469) with IG-like fold ChpA-C PF03777.13 BAD85714.1 - 0.074 12.9 0.8 7.4 6.5 0.1 2.3 2 0 0 2 2 2 0 ChpA-C DUF4115 PF13464.6 BAD85714.1 - 0.16 12.2 1.2 3.3 8.0 0.0 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF4115) Ribosomal_S8 PF00410.19 BAD85715.1 - 1e-27 96.6 0.0 1.3e-27 96.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_S14 PF00253.21 BAD85716.1 - 4.9e-09 35.8 5.3 5.4e-09 35.7 5.3 1.1 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e zf-FPG_IleRS PF06827.14 BAD85716.1 - 0.086 12.7 4.2 0.14 12.1 4.2 1.3 1 0 0 1 1 1 0 Zinc finger found in FPG and IleRS DUF2039 PF10217.9 BAD85716.1 - 0.15 12.5 2.4 3 8.2 0.0 2.0 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2039) Ribosomal_L5_C PF00673.21 BAD85717.1 - 1.3e-27 95.8 0.0 2.5e-27 94.9 0.0 1.5 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.19 BAD85717.1 - 2.3e-20 72.6 0.2 4.2e-20 71.8 0.2 1.5 1 0 0 1 1 1 1 Ribosomal protein L5 FctA PF12892.7 BAD85717.1 - 0.2 12.5 0.0 0.24 12.2 0.0 1.3 1 0 0 1 1 1 0 Spy0128-like isopeptide containing domain Ribosomal_S4e PF00900.20 BAD85718.1 - 3.4e-24 84.6 0.1 6e-24 83.7 0.1 1.4 1 0 0 1 1 1 1 Ribosomal family S4e RS4NT PF08071.12 BAD85718.1 - 1e-17 63.9 9.1 1.7e-17 63.2 9.1 1.4 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4 PF01479.25 BAD85718.1 - 4.1e-13 48.8 1.4 4.6e-13 48.6 0.1 1.8 2 0 0 2 2 2 1 S4 domain KOW PF00467.29 BAD85718.1 - 0.00088 19.1 0.6 0.0022 17.9 0.6 1.7 1 0 0 1 1 1 1 KOW motif 40S_S4_C PF16121.5 BAD85718.1 - 0.0043 16.7 0.0 0.016 14.8 0.0 2.0 2 0 0 2 2 2 1 40S ribosomal protein S4 C-terminus Ribosomal_L26 PF16906.5 BAD85719.1 - 6e-37 126.0 0.3 7.5e-37 125.7 0.3 1.1 1 0 0 1 1 1 1 Ribosomal proteins L26 eukaryotic, L24P archaeal KOW PF00467.29 BAD85719.1 - 7.6e-09 35.2 6.8 7.6e-09 35.2 6.8 1.7 2 0 0 2 2 2 1 KOW motif MS_channel PF00924.18 BAD85719.1 - 0.2 11.2 0.1 0.27 10.8 0.1 1.2 1 0 0 1 1 1 0 Mechanosensitive ion channel Ribosomal_L14 PF00238.19 BAD85720.1 - 4.1e-35 120.5 1.2 4.9e-35 120.3 1.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e DUF5335 PF17269.2 BAD85720.1 - 0.038 13.8 0.0 0.056 13.3 0.0 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5335) Ribosomal_S17 PF00366.20 BAD85721.1 - 6.6e-27 93.4 4.3 8.4e-27 93.1 4.3 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 Ribosomal_S17_N PF16205.5 BAD85721.1 - 0.017 15.5 0.0 0.039 14.3 0.0 1.7 1 0 0 1 1 1 0 Ribosomal_S17 N-terminal zf-C3H1 PF10650.9 BAD85721.1 - 0.059 13.1 2.1 0.11 12.2 1.1 1.8 2 0 0 2 2 2 0 Putative zinc-finger domain UPF0086 PF01868.16 BAD85722.1 - 1.9e-19 69.3 0.3 3.3e-19 68.6 0.0 1.5 2 0 0 2 2 2 1 Domain of unknown function UPF0086 SUI1 PF01253.22 BAD85723.1 - 3.9e-20 72.2 0.2 4.7e-20 71.9 0.2 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.14 BAD85723.1 - 1.9e-05 24.9 0.2 2.5e-05 24.5 0.2 1.2 1 0 0 1 1 1 1 Mitochondrial large subunit ribosomal protein (Img2) DUF2179 PF10035.9 BAD85723.1 - 0.044 13.5 0.2 0.076 12.8 0.2 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2179) Ribosomal_L29 PF00831.23 BAD85724.1 - 8.7e-18 64.0 4.2 1e-17 63.8 4.2 1.1 1 0 0 1 1 1 1 Ribosomal L29 protein DUF1192 PF06698.11 BAD85724.1 - 0.11 12.6 0.4 0.11 12.6 0.4 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1192) Ribosomal_S3_C PF00189.20 BAD85725.1 - 2.1e-24 85.8 1.2 3.4e-24 85.1 1.2 1.4 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.17 BAD85725.1 - 6e-16 58.0 0.4 1.8e-15 56.5 0.1 2.0 2 0 0 2 2 2 1 KH domain KH_1 PF00013.29 BAD85725.1 - 0.07 13.0 2.7 0.11 12.4 0.1 2.5 3 0 0 3 3 3 0 KH domain Ribosomal_L22 PF00237.19 BAD85726.1 - 1.2e-32 112.2 0.0 1.4e-32 112.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Ribosomal_S19 PF00203.21 BAD85727.1 - 2e-36 123.7 0.8 2.8e-36 123.3 0.8 1.2 1 0 0 1 1 1 1 Ribosomal protein S19 bZIP_Maf PF03131.17 BAD85727.1 - 0.0045 17.5 0.4 0.0071 16.8 0.4 1.3 1 0 0 1 1 1 1 bZIP Maf transcription factor Citrate_synt PF00285.21 BAD85727.1 - 0.014 14.5 0.1 0.016 14.3 0.1 1.3 1 1 0 1 1 1 0 Citrate synthase, C-terminal domain pPIWI_RE_Z PF18155.1 BAD85727.1 - 0.015 15.2 0.0 0.02 14.8 0.0 1.1 1 0 0 1 1 1 0 pPIWI RE three-gene island domain Z Ribosomal_L39 PF00832.20 BAD85727.1 - 0.025 14.2 0.7 0.049 13.3 0.7 1.5 1 0 0 1 1 1 0 Ribosomal L39 protein Ribosomal_L2_C PF03947.18 BAD85728.1 - 2.1e-42 144.3 0.5 4e-42 143.4 0.5 1.4 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.23 BAD85728.1 - 1.1e-21 76.6 0.0 2.9e-21 75.2 0.0 1.8 1 0 0 1 1 1 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_L23 PF00276.20 BAD85729.1 - 1.3e-20 73.6 6.5 1.3e-19 70.3 6.5 1.9 1 1 0 1 1 1 1 Ribosomal protein L23 TusA PF01206.17 BAD85729.1 - 0.0016 18.2 0.3 0.0021 17.9 0.3 1.3 1 0 0 1 1 1 1 Sulfurtransferase TusA Ribosomal_L4 PF00573.22 BAD85730.1 - 1.3e-49 168.5 0.4 1.5e-49 168.3 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family DUF2149 PF09919.9 BAD85730.1 - 0.015 15.5 0.1 0.034 14.4 0.1 1.6 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2149) Ribosomal_L3 PF00297.22 BAD85731.1 - 6.5e-91 305.1 0.1 7.7e-91 304.8 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L3 Methyltrn_RNA_3 PF02598.17 BAD85732.1 - 1.6e-50 172.2 0.0 2.1e-50 171.9 0.0 1.1 1 0 0 1 1 1 1 Putative RNA methyltransferase SpoU_methylase PF00588.19 BAD85732.1 - 3.8e-06 27.1 0.0 0.012 15.7 0.0 2.2 2 0 0 2 2 2 2 SpoU rRNA Methylase family DUF234 PF03008.14 BAD85733.1 - 1.2e-30 105.9 1.3 2.6e-30 104.8 0.1 2.3 3 0 0 3 3 3 1 Archaea bacterial proteins of unknown function ATPase_2 PF01637.18 BAD85733.1 - 6.7e-23 81.8 1.1 1e-21 78.0 1.1 2.2 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 BAD85733.1 - 2.1e-09 37.5 0.0 4.7e-09 36.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 BAD85733.1 - 1.8e-07 31.7 1.8 5.5e-06 26.9 0.3 2.8 2 1 0 3 3 3 1 AAA ATPase domain AAA_22 PF13401.6 BAD85733.1 - 5.7e-07 29.9 0.0 1.6e-06 28.4 0.0 1.8 1 0 0 1 1 1 1 AAA domain UPF0102 PF02021.17 BAD85733.1 - 0.0011 19.2 0.0 0.0026 17.9 0.0 1.6 1 0 0 1 1 1 1 Uncharacterised protein family UPF0102 HTH_45 PF14947.6 BAD85733.1 - 0.021 14.8 0.1 0.052 13.5 0.1 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix TniB PF05621.11 BAD85733.1 - 0.023 14.1 0.1 0.34 10.3 0.1 2.2 1 1 0 1 1 1 0 Bacterial TniB protein HxlR PF01638.17 BAD85733.1 - 0.1 12.4 0.1 0.26 11.2 0.1 1.6 1 0 0 1 1 1 0 HxlR-like helix-turn-helix AAA_24 PF13479.6 BAD85733.1 - 0.14 11.9 0.0 0.26 11.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain Lig_C PF18330.1 BAD85734.1 - 1.5e-27 96.1 0.0 3.2e-27 95.0 0.0 1.6 1 0 0 1 1 1 1 Ligase Pab1020 C-terminal region RNA_ligase PF09414.10 BAD85734.1 - 1.9e-18 67.3 0.1 3.2e-18 66.6 0.1 1.3 1 0 0 1 1 1 1 RNA ligase DNA_ligase_A_M PF01068.21 BAD85734.1 - 1.2e-06 28.3 0.0 0.043 13.5 0.0 2.2 2 0 0 2 2 2 2 ATP dependent DNA ligase domain Ribosomal_L16 PF00252.18 BAD85735.1 - 1.5e-32 112.4 0.2 1.8e-32 112.1 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e MFS_1 PF07690.16 BAD85736.1 - 5.5e-17 61.7 40.7 5.5e-17 61.7 40.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 BAD85736.1 - 0.00017 20.6 11.5 0.00017 20.6 11.5 3.0 1 1 2 3 3 3 1 Sugar (and other) transporter DUF5353 PF17304.2 BAD85736.1 - 4.4 7.1 7.1 1.7 8.4 1.7 3.0 3 0 0 3 3 3 0 Family of unknown function (DUF5353) Aminotran_5 PF00266.19 BAD85737.1 - 1.2e-40 139.6 0.0 1.5e-40 139.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Piwi PF02171.17 BAD85737.1 - 0.22 10.7 0.0 0.35 10.0 0.0 1.3 1 0 0 1 1 1 0 Piwi domain T2SSE PF00437.20 BAD85738.1 - 5e-11 42.2 0.1 6.9e-11 41.7 0.1 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_16 PF13191.6 BAD85738.1 - 0.00022 21.7 0.0 0.00049 20.5 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_14 PF13173.6 BAD85738.1 - 0.0014 18.7 0.3 0.0039 17.2 0.3 1.7 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.14 BAD85738.1 - 0.0027 17.7 0.0 0.0042 17.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_7 PF12775.7 BAD85738.1 - 0.0064 16.0 0.1 0.076 12.5 0.0 2.0 1 1 1 2 2 2 1 P-loop containing dynein motor region CPT PF07931.12 BAD85738.1 - 0.01 15.7 0.0 0.015 15.1 0.0 1.3 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein TniB PF05621.11 BAD85738.1 - 0.011 15.1 0.1 0.82 9.0 0.0 2.6 2 1 0 2 2 2 0 Bacterial TniB protein MobB PF03205.14 BAD85738.1 - 0.02 14.8 0.0 0.045 13.7 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_18 PF13238.6 BAD85738.1 - 0.047 14.3 0.0 0.11 13.0 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 BAD85738.1 - 0.054 13.8 0.1 0.27 11.5 0.1 2.0 1 1 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.18 BAD85738.1 - 0.054 12.9 0.0 0.1 12.0 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family Kinase-PPPase PF03618.14 BAD85738.1 - 0.057 13.2 1.4 0.23 11.2 0.1 2.0 1 1 1 2 2 2 0 Kinase/pyrophosphorylase cobW PF02492.19 BAD85738.1 - 0.062 12.9 0.0 0.15 11.6 0.0 1.8 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain TrwB_AAD_bind PF10412.9 BAD85738.1 - 0.067 12.1 0.0 0.094 11.6 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_29 PF13555.6 BAD85738.1 - 0.11 12.3 0.0 0.32 10.8 0.0 1.8 1 0 0 1 1 1 0 P-loop containing region of AAA domain SMC_N PF02463.19 BAD85738.1 - 0.19 11.1 0.0 4.1 6.8 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain tRNA-synt_2 PF00152.20 BAD85739.1 - 2.1e-43 148.6 0.0 2.4e-43 148.4 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) ATP_bind_3 PF01171.20 BAD85740.1 - 5.1e-08 32.9 0.1 1.1e-07 31.8 0.0 1.6 2 0 0 2 2 2 1 PP-loop family QueC PF06508.13 BAD85740.1 - 1.6e-07 31.0 0.0 2.9e-07 30.2 0.0 1.5 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC PAPS_reduct PF01507.19 BAD85740.1 - 5.7e-06 26.5 0.0 8.3e-06 25.9 0.0 1.2 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family tRNA_Me_trans PF03054.16 BAD85740.1 - 1.7e-05 23.8 0.0 3.1e-05 22.9 0.0 1.3 1 1 0 1 1 1 1 tRNA methyl transferase NAD_synthase PF02540.17 BAD85740.1 - 0.00011 21.4 0.0 0.00016 20.9 0.0 1.2 1 0 0 1 1 1 1 NAD synthase Diphthami_syn_2 PF01902.17 BAD85740.1 - 0.00015 21.4 0.1 0.00025 20.6 0.1 1.3 1 0 0 1 1 1 1 Diphthamide synthase ThiI PF02568.14 BAD85740.1 - 0.00064 19.4 0.1 0.0013 18.4 0.1 1.5 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) Arginosuc_synth PF00764.19 BAD85740.1 - 0.0051 16.2 0.0 0.0067 15.8 0.0 1.1 1 0 0 1 1 1 1 Arginosuccinate synthase zf-RRPl_C4 PF17026.5 BAD85740.1 - 0.046 13.8 1.6 1.1 9.4 0.1 2.2 2 0 0 2 2 2 0 Putative ribonucleoprotein zinc-finger pf C4 type PTPS_related PF10131.9 BAD85741.1 - 2.7e-151 505.0 14.4 3.4e-151 504.7 14.4 1.1 1 0 0 1 1 1 1 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein DUF3367 PF11847.8 BAD85741.1 - 0.014 13.3 7.5 0.022 12.7 7.5 1.2 1 0 0 1 1 1 0 Alpha-(1->3)-arabinofuranosyltransferase DoxX_2 PF13564.6 BAD85741.1 - 0.095 12.8 0.1 0.095 12.8 0.1 3.5 5 0 0 5 5 5 0 DoxX-like family Glyco_tranf_2_3 PF13641.6 BAD85743.1 - 2.6e-26 93.0 0.8 5.7e-26 91.8 0.1 1.8 2 1 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 BAD85743.1 - 4.8e-26 91.9 3.7 4.8e-26 91.9 3.7 1.7 2 0 0 2 2 2 1 Glycosyl transferase family group 2 Glycos_transf_2 PF00535.26 BAD85743.1 - 3.1e-21 75.9 0.0 4.4e-21 75.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.6 BAD85743.1 - 1.9e-10 40.5 0.0 2.9e-10 39.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_4 PF13704.6 BAD85743.1 - 5e-07 30.1 0.0 1.1e-06 29.1 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.9 BAD85743.1 - 0.0012 18.4 0.1 0.0023 17.5 0.0 1.4 2 0 0 2 2 2 1 Glycosyltransferase like family 2 HGD-D PF06050.13 BAD85743.1 - 0.038 13.8 0.0 0.074 12.8 0.0 1.4 2 0 0 2 2 2 0 2-hydroxyglutaryl-CoA dehydratase, D-component DUF2306 PF10067.9 BAD85744.1 - 0.014 15.7 8.0 0.019 15.2 8.0 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2306) SCAMP PF04144.13 BAD85744.1 - 1.8 8.9 11.1 2.4 8.4 10.9 1.3 1 1 0 1 1 1 0 SCAMP family ATP_bind_3 PF01171.20 BAD85745.1 - 1.6e-13 50.9 0.0 2.5e-13 50.2 0.0 1.3 1 0 0 1 1 1 1 PP-loop family PAPS_reduct PF01507.19 BAD85745.1 - 2.7e-08 34.1 0.0 4.4e-08 33.4 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family QueC PF06508.13 BAD85745.1 - 6.4e-07 29.1 0.1 1.7e-05 24.5 0.0 2.2 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC ThiI PF02568.14 BAD85745.1 - 6.7e-07 29.1 0.0 1.1e-06 28.3 0.0 1.3 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) tRNA_Me_trans PF03054.16 BAD85745.1 - 2.4e-06 26.6 0.1 1.3e-05 24.2 0.1 1.9 1 1 0 1 1 1 1 tRNA methyl transferase RecR PF02132.15 BAD85745.1 - 0.0022 17.5 0.7 0.0022 17.5 0.7 2.6 3 0 0 3 3 3 1 RecR protein Rhodanese PF00581.20 BAD85745.1 - 0.01 16.3 0.0 0.021 15.3 0.0 1.5 1 0 0 1 1 1 0 Rhodanese-like domain NAD_synthase PF02540.17 BAD85745.1 - 0.016 14.4 0.0 0.031 13.4 0.0 1.4 1 0 0 1 1 1 0 NAD synthase Asn_synthase PF00733.21 BAD85745.1 - 0.016 14.9 0.0 0.027 14.2 0.0 1.2 1 0 0 1 1 1 0 Asparagine synthase C1_2 PF03107.16 BAD85745.1 - 0.069 13.5 8.9 0.97 9.8 0.8 3.3 3 0 0 3 3 3 0 C1 domain Transp_Tc5_C PF04236.15 BAD85745.1 - 1.4 9.3 6.8 0.19 12.1 1.1 2.4 2 0 0 2 2 2 0 Tc5 transposase C-terminal domain zn-ribbon_14 PF16503.5 BAD85745.1 - 2.2 7.9 8.4 0.13 11.8 2.2 2.2 2 0 0 2 2 2 0 Zinc-ribbon Pyr_redox_2 PF07992.14 BAD85746.1 - 4.4e-16 59.0 0.6 5.6e-07 29.1 0.1 3.1 3 0 0 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 BAD85746.1 - 2.7e-09 36.6 0.1 0.00027 20.1 0.0 2.2 2 0 0 2 2 2 2 Glucose inhibited division protein A DAO PF01266.24 BAD85746.1 - 8.1e-09 35.5 0.3 6.6e-06 25.9 0.1 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase Thi4 PF01946.17 BAD85746.1 - 2.1e-07 30.4 0.7 3.6e-07 29.7 0.1 1.6 2 0 0 2 2 2 1 Thi4 family FAD_binding_2 PF00890.24 BAD85746.1 - 6.1e-07 28.9 0.8 5.4e-06 25.7 0.1 2.3 2 0 0 2 2 2 1 FAD binding domain HI0933_like PF03486.14 BAD85746.1 - 6.8e-07 28.3 0.0 2.1e-06 26.7 0.0 1.7 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_8 PF13450.6 BAD85746.1 - 1.2e-06 28.6 0.1 1.1e-05 25.5 0.1 2.7 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.12 BAD85746.1 - 0.00015 20.9 0.1 0.00024 20.3 0.1 1.3 1 0 0 1 1 1 1 Lycopene cyclase protein Pyr_redox_3 PF13738.6 BAD85746.1 - 0.00022 20.6 0.2 0.00091 18.6 0.0 2.1 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 BAD85746.1 - 0.00033 20.0 0.0 0.0016 17.8 0.0 2.1 3 0 0 3 3 3 1 FAD binding domain Pyr_redox PF00070.27 BAD85746.1 - 0.018 15.6 0.1 6.1 7.5 0.0 3.1 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 BAD85746.1 - 0.027 13.8 0.2 0.039 13.3 0.2 1.2 1 0 0 1 1 1 0 FAD dependent oxidoreductase NAD_binding_9 PF13454.6 BAD85746.1 - 0.038 14.0 0.0 0.075 13.0 0.0 1.5 1 0 0 1 1 1 0 FAD-NAD(P)-binding CBS PF00571.28 BAD85747.1 - 1.2e-27 96.1 3.2 4.8e-14 52.5 1.9 2.3 2 0 0 2 2 2 2 CBS domain DUF4941 PF16299.5 BAD85747.1 - 0.058 12.7 0.0 0.1 11.9 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4941) Na_H_Exchanger PF00999.21 BAD85748.1 - 1.9e-62 211.3 48.6 2.2e-62 211.1 48.6 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Na_H_Exchanger PF00999.21 BAD85749.1 - 1.3e-69 234.8 44.2 1.6e-69 234.6 44.2 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Peptidase_C16 PF01831.17 BAD85749.1 - 0.11 12.2 0.5 0.21 11.3 0.2 1.6 2 0 0 2 2 2 0 Peptidase C16 family MarC PF01914.17 BAD85750.1 - 1.3e-30 106.3 23.5 1.6e-30 106.1 23.5 1.0 1 0 0 1 1 1 1 MarC family integral membrane protein HKR_ArcB_TM PF18415.1 BAD85750.1 - 1.6 9.6 18.0 0.85 10.5 0.6 3.7 2 2 2 4 4 4 0 Histidine kinase receptor ArcB trans-membrane domain tRNA-synt_His PF13393.6 BAD85751.1 - 2.8e-66 223.9 0.0 3.5e-66 223.6 0.0 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase HGTP_anticodon PF03129.20 BAD85751.1 - 1.8e-18 66.5 1.2 1.8e-18 66.5 1.2 1.9 2 0 0 2 2 2 1 Anticodon binding domain tRNA-synt_2b PF00587.25 BAD85751.1 - 1.8e-14 54.1 0.0 3.3e-14 53.3 0.0 1.4 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_2 PF00152.20 BAD85751.1 - 0.00028 20.1 2.6 0.035 13.2 1.2 2.5 2 1 0 2 2 2 2 tRNA synthetases class II (D, K and N) tRNA-synt_2d PF01409.20 BAD85751.1 - 0.027 13.9 0.0 0.085 12.3 0.0 1.8 2 1 0 2 2 2 0 tRNA synthetases class II core domain (F) PLDc_2 PF13091.6 BAD85752.1 - 1.4e-23 83.3 0.1 2.4e-23 82.5 0.1 1.4 1 0 0 1 1 1 1 PLD-like domain PLDc PF00614.22 BAD85752.1 - 1.7e-06 28.0 0.1 3.2e-06 27.1 0.1 1.5 1 0 0 1 1 1 1 Phospholipase D Active site motif PP_kinase_C_1 PF17941.1 BAD85752.1 - 2.9e-05 23.7 0.0 4.9e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 Polyphosphate kinase C-terminal domain 1 Spc7 PF08317.11 BAD85752.1 - 0.0016 17.4 5.6 0.0025 16.7 5.6 1.3 1 0 0 1 1 1 1 Spc7 kinetochore protein Cast PF10174.9 BAD85752.1 - 0.0067 14.7 5.4 0.0096 14.2 5.4 1.1 1 0 0 1 1 1 1 RIM-binding protein of the cytomatrix active zone DUF3584 PF12128.8 BAD85752.1 - 0.0095 13.5 1.2 0.013 13.0 1.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) WEMBL PF05701.11 BAD85752.1 - 0.011 14.4 4.6 0.016 13.9 4.6 1.1 1 0 0 1 1 1 0 Weak chloroplast movement under blue light Filament PF00038.21 BAD85752.1 - 0.011 15.3 5.2 0.22 11.1 1.9 2.1 1 1 1 2 2 2 0 Intermediate filament protein DUF3450 PF11932.8 BAD85752.1 - 0.015 14.7 1.3 0.24 10.7 0.4 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) DUF745 PF05335.13 BAD85752.1 - 0.018 14.8 3.8 0.027 14.2 3.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF745) Taxilin PF09728.9 BAD85752.1 - 0.022 13.9 7.2 0.031 13.4 7.2 1.1 1 0 0 1 1 1 0 Myosin-like coiled-coil protein Wtap PF17098.5 BAD85752.1 - 0.03 14.2 5.3 0.47 10.4 1.8 2.6 2 1 0 2 2 2 0 WTAP/Mum2p family DHR10 PF18595.1 BAD85752.1 - 0.036 14.1 9.3 0.039 14.0 4.9 2.2 1 1 1 2 2 2 0 Designed helical repeat protein 10 domain GAS PF13851.6 BAD85752.1 - 0.042 13.2 5.2 0.069 12.5 4.7 1.5 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding HTH_57 PF18679.1 BAD85752.1 - 0.045 14.1 0.2 0.093 13.1 0.2 1.5 1 0 0 1 1 1 0 ThcOx helix turn helix domain TPR_MLP1_2 PF07926.12 BAD85752.1 - 0.045 13.8 9.3 1.3 9.1 0.2 2.3 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein PmbA_TldD PF01523.16 BAD85752.1 - 0.05 13.4 0.1 0.075 12.9 0.1 1.4 1 1 0 1 1 1 0 Putative modulator of DNA gyrase DUF4201 PF13870.6 BAD85752.1 - 0.058 13.1 8.2 2.1 8.1 3.3 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4201) MobL PF18555.1 BAD85752.1 - 0.063 12.5 0.1 0.09 12.0 0.1 1.2 1 0 0 1 1 1 0 MobL relaxases Med9 PF07544.13 BAD85752.1 - 0.086 12.9 2.6 1.3 9.2 0.1 2.6 2 0 0 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 TolA_bind_tri PF16331.5 BAD85752.1 - 0.09 12.9 1.7 4.3 7.5 0.6 2.3 1 1 1 2 2 2 0 TolA binding protein trimerisation ApoLp-III PF07464.11 BAD85752.1 - 0.094 12.8 3.0 1.6 8.8 0.3 2.3 1 1 1 2 2 2 0 Apolipophorin-III precursor (apoLp-III) CALCOCO1 PF07888.11 BAD85752.1 - 0.11 11.3 8.1 0.22 10.4 8.1 1.4 1 0 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like PP_kinase_C PF13090.6 BAD85752.1 - 0.14 11.6 0.6 0.78 9.2 0.1 2.3 2 1 0 2 2 2 0 Polyphosphate kinase C-terminal domain 2 TIR_2 PF13676.6 BAD85752.1 - 0.16 12.6 0.6 17 6.0 0.1 2.9 1 1 1 3 3 3 0 TIR domain PspA_IM30 PF04012.12 BAD85752.1 - 0.18 11.4 1.6 7.9 6.0 0.6 2.4 2 0 0 2 2 2 0 PspA/IM30 family CCDC144C PF14915.6 BAD85752.1 - 0.22 10.6 11.8 0.88 8.6 11.8 1.8 1 1 0 1 1 1 0 CCDC144C protein coiled-coil region APG6_N PF17675.1 BAD85752.1 - 0.23 12.0 12.2 0.3 11.6 11.2 1.6 1 1 0 1 1 1 0 Apg6 coiled-coil region HR1 PF02185.16 BAD85752.1 - 0.29 11.3 7.2 0.44 10.7 0.3 2.5 2 0 0 2 2 2 0 Hr1 repeat Golgin_A5 PF09787.9 BAD85752.1 - 0.38 10.2 6.7 0.32 10.4 3.1 1.9 1 1 1 2 2 2 0 Golgin subfamily A member 5 FapA PF03961.13 BAD85752.1 - 0.4 9.2 3.2 1.1 7.8 3.3 1.7 1 1 0 1 1 1 0 Flagellar Assembly Protein A CENP-F_leu_zip PF10473.9 BAD85752.1 - 0.43 10.6 12.7 1.9 8.5 1.2 2.2 1 1 1 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF1664 PF07889.12 BAD85752.1 - 0.46 10.5 3.7 12 6.0 0.4 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) Snapin_Pallidin PF14712.6 BAD85752.1 - 0.5 10.8 4.5 0.74 10.3 1.6 2.2 1 1 1 2 2 2 0 Snapin/Pallidin Cnn_1N PF07989.11 BAD85752.1 - 0.63 10.2 7.7 63 3.8 7.6 2.7 1 1 0 1 1 1 0 Centrosomin N-terminal motif 1 Fez1 PF06818.15 BAD85752.1 - 0.64 10.4 8.3 6.4 7.2 8.5 2.0 1 1 0 1 1 1 0 Fez1 KxDL PF10241.9 BAD85752.1 - 0.64 10.3 3.9 1.3 9.4 0.7 2.5 1 1 0 2 2 2 0 Uncharacterized conserved protein DUF4549 PF15082.6 BAD85752.1 - 1.1 9.0 4.9 2.5 7.9 2.1 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4549) Spc24 PF08286.11 BAD85752.1 - 1.5 9.1 9.3 10 6.4 3.0 2.8 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 Prefoldin_2 PF01920.20 BAD85752.1 - 1.6 8.7 7.6 9.9 6.2 3.2 2.4 2 0 0 2 2 2 0 Prefoldin subunit TMPIT PF07851.13 BAD85752.1 - 2.3 7.4 4.9 11 5.1 4.9 1.9 1 1 0 1 1 1 0 TMPIT-like protein Plk4_PB2 PF18409.1 BAD85752.1 - 2.4 8.9 4.9 17 6.1 0.8 2.8 2 1 1 3 3 2 0 Polo-like Kinase 4 Polo Box 2 ZapB PF06005.12 BAD85752.1 - 2.4 8.7 7.2 6.8 7.2 0.3 2.4 2 0 0 2 2 2 0 Cell division protein ZapB HIP1_clath_bdg PF16515.5 BAD85752.1 - 4.7 7.9 8.2 30 5.3 2.4 2.4 1 1 1 2 2 2 0 Clathrin-binding domain of Huntingtin-interacting protein 1 CENP-H PF05837.12 BAD85752.1 - 6 7.3 8.8 2.2 8.7 3.8 2.3 1 1 1 2 2 2 0 Centromere protein H (CENP-H) YabA PF06156.13 BAD85754.1 - 1.8e-06 28.5 4.9 2.3e-06 28.2 4.9 1.1 1 0 0 1 1 1 1 Initiation control protein YabA Med9 PF07544.13 BAD85754.1 - 2.9e-05 24.1 7.8 0.0001 22.3 3.3 2.2 1 1 1 2 2 2 1 RNA polymerase II transcription mediator complex subunit 9 COG6 PF06419.11 BAD85754.1 - 0.00057 18.2 1.1 0.00065 18.1 1.1 1.0 1 0 0 1 1 1 1 Conserved oligomeric complex COG6 HAUS-augmin3 PF14932.6 BAD85754.1 - 0.00073 19.2 2.0 0.00082 19.0 2.0 1.0 1 0 0 1 1 1 1 HAUS augmin-like complex subunit 3 HOOK PF05622.12 BAD85754.1 - 0.0027 16.0 3.9 0.003 15.8 3.9 1.0 1 0 0 1 1 1 1 HOOK protein DUF16 PF01519.16 BAD85754.1 - 0.0036 17.8 1.6 0.0045 17.4 1.6 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF16 PI3K_P85_iSH2 PF16454.5 BAD85754.1 - 0.0077 15.8 4.7 0.0099 15.5 4.7 1.1 1 0 0 1 1 1 1 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain Csm1_N PF18504.1 BAD85754.1 - 0.0097 16.2 3.9 0.35 11.3 2.3 2.1 2 0 0 2 2 2 1 Csm1 N-terminal domain zf-C4H2 PF10146.9 BAD85754.1 - 0.02 15.2 2.1 0.021 15.2 2.1 1.0 1 0 0 1 1 1 0 Zinc finger-containing protein AAA_28 PF13521.6 BAD85754.1 - 0.021 15.1 0.2 0.024 14.9 0.2 1.1 1 0 0 1 1 1 0 AAA domain LRRFIP PF09738.9 BAD85754.1 - 0.025 14.1 3.9 0.029 13.9 3.9 1.0 1 0 0 1 1 1 0 LRRFIP family GvpK PF05121.12 BAD85754.1 - 0.027 14.5 2.7 0.034 14.2 1.9 1.6 1 1 0 1 1 1 0 Gas vesicle protein K AAA_13 PF13166.6 BAD85754.1 - 0.029 13.0 1.3 0.031 12.9 1.3 1.0 1 0 0 1 1 1 0 AAA domain Lzipper-MIP1 PF14389.6 BAD85754.1 - 0.034 14.4 5.0 0.034 14.4 5.0 1.7 1 1 0 1 1 1 0 Leucine-zipper of ternary complex factor MIP1 CbiG_C PF01890.16 BAD85754.1 - 0.056 14.0 0.1 0.078 13.5 0.1 1.5 1 1 0 1 1 1 0 Cobalamin synthesis G C-terminus DUF4894 PF16235.5 BAD85754.1 - 0.064 13.6 2.6 0.079 13.3 2.6 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4894) USP8_interact PF08941.10 BAD85754.1 - 0.076 12.8 1.4 0.089 12.6 1.4 1.1 1 0 0 1 1 1 0 USP8 interacting TolA_bind_tri PF16331.5 BAD85754.1 - 0.08 13.0 5.6 0.11 12.6 5.6 1.1 1 0 0 1 1 1 0 TolA binding protein trimerisation ZapB PF06005.12 BAD85754.1 - 0.17 12.3 9.3 0.23 11.9 9.3 1.2 1 0 0 1 1 1 0 Cell division protein ZapB MutS_IV PF05190.18 BAD85754.1 - 0.18 12.2 3.6 0.61 10.5 4.0 1.6 1 1 0 1 1 1 0 MutS family domain IV Spc24 PF08286.11 BAD85754.1 - 0.27 11.5 5.4 2.1 8.6 5.4 2.0 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 Ax_dynein_light PF10211.9 BAD85754.1 - 0.33 10.9 7.7 0.39 10.6 7.7 1.1 1 0 0 1 1 1 0 Axonemal dynein light chain Fungal_TACC PF12709.7 BAD85754.1 - 0.39 11.2 9.8 0.52 10.8 2.6 2.1 1 1 1 2 2 2 0 Fungal Transforming acidic coiled-coil (TACC) proteins TSC22 PF01166.18 BAD85754.1 - 0.41 11.0 8.4 0.78 10.1 5.1 2.2 1 1 1 2 2 2 0 TSC-22/dip/bun family bZIP_2 PF07716.15 BAD85754.1 - 0.75 9.9 8.4 8.2 6.6 0.1 2.3 1 1 1 2 2 2 0 Basic region leucine zipper SlyX PF04102.12 BAD85754.1 - 0.79 10.4 5.6 2.6 8.8 5.6 1.8 1 1 0 1 1 1 0 SlyX DivIC PF04977.15 BAD85754.1 - 0.92 9.3 6.3 9.1 6.1 6.2 2.0 1 1 0 1 1 1 0 Septum formation initiator GPS2_interact PF15784.5 BAD85754.1 - 2 8.9 6.2 2.6 8.6 5.7 1.5 1 1 0 1 1 1 0 G-protein pathway suppressor 2-interacting domain NYD-SP28_assoc PF14775.6 BAD85754.1 - 2.6 8.2 7.8 15 5.8 0.4 2.6 1 1 1 2 2 2 0 Sperm tail C-terminal domain Macoilin PF09726.9 BAD85754.1 - 2.7 6.4 6.8 3 6.3 6.8 1.0 1 0 0 1 1 1 0 Macoilin family tRNA-synt_2c PF01411.19 BAD85756.1 - 5.8e-161 536.7 0.0 7.9e-161 536.3 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (A) DHHA1 PF02272.19 BAD85756.1 - 1.6e-19 70.7 7.3 1.6e-19 70.7 7.3 2.2 3 0 0 3 3 3 1 DHHA1 domain tRNA_SAD PF07973.14 BAD85756.1 - 3.2e-16 59.1 0.2 9.1e-16 57.7 0.2 1.9 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain Bet_v_1 PF00407.19 BAD85756.1 - 0.058 13.3 0.5 0.25 11.2 0.1 2.1 2 0 0 2 2 2 0 Pathogenesis-related protein Bet v I family SSF PF00474.17 BAD85757.1 - 3.1e-63 214.1 19.7 4.8e-63 213.4 19.7 1.3 1 0 0 1 1 1 1 Sodium:solute symporter family MttA_Hcf106 PF02416.16 BAD85757.1 - 0.19 11.1 2.3 0.44 9.9 0.3 2.9 2 0 0 2 2 2 0 mttA/Hcf106 family Fe-ADH PF00465.19 BAD85758.1 - 2.6e-106 355.5 0.0 2.9e-106 355.4 0.0 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.6 BAD85758.1 - 8.5e-14 51.8 0.1 1.1e-06 28.5 0.1 2.2 1 1 1 2 2 2 2 Iron-containing alcohol dehydrogenase DUF1967 PF09269.11 BAD85758.1 - 0.019 14.9 0.2 0.24 11.4 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1967) DUF2007 PF09413.10 BAD85758.1 - 0.099 12.8 0.1 1.1 9.5 0.0 2.6 3 0 0 3 3 3 0 Putative prokaryotic signal transducing protein MmcB-like PF06319.12 BAD85759.1 - 0.0034 17.1 0.0 0.0048 16.6 0.0 1.2 1 0 0 1 1 1 1 DNA repair protein MmcB-like MTES_1575 PF18741.1 BAD85759.1 - 0.025 14.7 0.0 0.035 14.3 0.0 1.2 1 0 0 1 1 1 0 REase_MTES_1575 NIF3 PF01784.18 BAD85761.1 - 4.8e-57 193.4 0.0 5.6e-57 193.2 0.0 1.0 1 0 0 1 1 1 1 NIF3 (NGG1p interacting factor 3) AP_endonuc_2 PF01261.24 BAD85761.1 - 0.0046 16.4 0.0 0.0065 15.9 0.0 1.4 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel ThiC_Rad_SAM PF01964.18 BAD85761.1 - 0.056 12.2 0.0 0.094 11.5 0.0 1.3 1 0 0 1 1 1 0 Radical SAM ThiC family DUF234 PF03008.14 BAD85762.1 - 2.9e-25 88.6 0.2 1.5e-24 86.3 0.2 2.2 2 0 0 2 2 2 1 Archaea bacterial proteins of unknown function ATPase_2 PF01637.18 BAD85762.1 - 9.4e-16 58.4 2.0 7e-15 55.6 2.0 2.1 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 BAD85762.1 - 2e-10 40.8 0.1 5.2e-10 39.5 0.1 1.6 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 BAD85762.1 - 8.7e-05 22.8 0.0 0.00021 21.5 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 BAD85762.1 - 0.00012 22.6 1.1 0.00094 19.6 0.2 2.2 1 1 0 2 2 2 1 AAA ATPase domain AAA_24 PF13479.6 BAD85762.1 - 0.0061 16.3 0.0 0.011 15.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain Radical_SAM PF04055.21 BAD85763.1 - 1.5e-33 116.5 0.0 1.1e-32 113.7 0.0 2.5 1 1 0 1 1 1 1 Radical SAM superfamily Radical_SAM_C PF16199.5 BAD85763.1 - 1.5e-27 95.4 0.1 3.6e-27 94.2 0.1 1.6 1 0 0 1 1 1 1 Radical_SAM C-terminal domain Acetyltransf_1 PF00583.25 BAD85763.1 - 1.3e-09 38.3 0.3 5.2e-09 36.4 0.3 2.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 BAD85763.1 - 3e-05 24.0 0.2 8e-05 22.6 0.2 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 BAD85763.1 - 0.0054 17.1 0.1 0.012 16.0 0.1 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain TrkA_C PF02080.21 BAD85764.1 - 1.2e-11 44.2 0.0 2.7e-11 43.2 0.0 1.6 1 0 0 1 1 1 1 TrkA-C domain Stevor PF17410.2 BAD85764.1 - 0.02 14.4 2.5 0.029 13.9 2.5 1.2 1 0 0 1 1 1 0 Subtelomeric Variable Open Reading frame DUF2207 PF09972.9 BAD85764.1 - 4 6.1 4.9 6.6 5.4 4.9 1.4 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF308 PF03729.13 BAD85765.1 - 2.8e-20 72.4 35.2 2.7e-12 46.8 12.1 3.1 1 1 2 3 3 3 3 Short repeat of unknown function (DUF308) DUF3292 PF11696.8 BAD85765.1 - 0.048 12.0 0.7 0.057 11.8 0.3 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3292) DUF2070 PF09843.9 BAD85765.1 - 1.9 6.7 16.1 2.2 6.4 16.1 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) DUF4267 PF14087.6 BAD85765.1 - 4.6 7.3 12.4 0.11 12.6 3.0 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4267) Chitin_synth_2 PF03142.15 BAD85765.1 - 5.1 5.6 9.4 6.9 5.2 9.4 1.1 1 0 0 1 1 1 0 Chitin synthase NPCBM_assoc PF10633.9 BAD85766.1 - 9.8e-30 102.6 17.1 2.4e-15 56.6 0.2 5.9 7 0 0 7 7 6 4 NPCBM-associated, NEW3 domain of alpha-galactosidase CarboxypepD_reg PF13620.6 BAD85766.1 - 3.6e-15 56.0 10.3 1.7e-11 44.2 2.7 4.4 4 0 0 4 4 4 2 Carboxypeptidase regulatory-like domain CARDB PF07705.11 BAD85766.1 - 1.2e-09 38.4 4.3 0.0004 20.6 0.2 4.7 3 2 1 4 4 4 3 CARDB PEGA PF08308.11 BAD85766.1 - 1.8e-07 31.0 0.3 6.9e-05 22.7 0.1 4.3 3 0 0 3 3 3 1 PEGA domain CarbopepD_reg_2 PF13715.6 BAD85766.1 - 4.8e-07 29.7 1.4 4.3e-05 23.4 0.1 3.4 3 0 0 3 3 3 1 CarboxypepD_reg-like domain DUF11 PF01345.18 BAD85766.1 - 3.4e-05 24.1 9.2 0.13 12.5 0.1 5.5 4 2 1 5 5 5 2 Domain of unknown function DUF11 N_BRCA1_IG PF16158.5 BAD85766.1 - 0.00011 22.9 0.4 0.23 12.2 0.0 4.2 4 1 1 5 5 5 1 Ig-like domain from next to BRCA1 gene DUF4832 PF16116.5 BAD85766.1 - 0.00012 22.0 0.0 0.00054 19.9 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4832) DUF4625 PF15418.6 BAD85766.1 - 0.00065 19.9 0.0 0.63 10.3 0.0 3.5 3 0 0 3 3 3 1 Domain of unknown function (DUF4625) MG2 PF01835.19 BAD85766.1 - 0.00078 19.9 0.7 5.8 7.4 0.0 5.4 3 3 2 5 5 5 1 MG2 domain DUF4397 PF14344.6 BAD85766.1 - 0.0025 18.6 3.6 0.14 12.9 0.1 4.1 4 1 1 5 5 4 1 Domain of unknown function (DUF4397) DUF2207 PF09972.9 BAD85766.1 - 0.0069 15.2 0.0 0.012 14.4 0.0 1.3 1 0 0 1 1 1 1 Predicted membrane protein (DUF2207) Transglut_N PF00868.20 BAD85766.1 - 0.013 15.9 0.0 15 6.0 0.0 4.3 5 0 0 5 5 5 0 Transglutaminase family TRAP_beta PF05753.14 BAD85766.1 - 0.02 14.3 0.3 6.6 6.1 0.0 3.3 4 0 0 4 4 4 0 Translocon-associated protein beta (TRAPB) Y_Y_Y PF07495.13 BAD85766.1 - 0.026 14.5 0.4 14 5.8 0.0 3.7 4 0 0 4 4 3 0 Y_Y_Y domain DUF4493 PF14900.6 BAD85766.1 - 0.039 13.8 7.3 0.4 10.5 0.8 3.9 4 0 0 4 4 4 0 Domain of unknown function (DUF4493) Peptidase_C25_C PF03785.14 BAD85766.1 - 0.069 13.0 1.5 0.86 9.5 0.1 3.1 2 1 0 2 2 2 0 Peptidase family C25, C terminal ig-like domain Alph_Pro_TM PF09608.10 BAD85766.1 - 0.083 12.7 0.0 0.41 10.4 0.0 2.1 2 0 0 2 2 2 0 Putative transmembrane protein (Alph_Pro_TM) Alpha_adaptinC2 PF02883.20 BAD85766.1 - 0.19 12.1 0.0 7.1 7.0 0.0 2.7 2 1 0 2 2 2 0 Adaptin C-terminal domain CBM_3 PF00942.18 BAD85766.1 - 0.24 11.8 0.6 6.1 7.4 0.1 3.0 3 0 0 3 3 3 0 Cellulose binding domain Qn_am_d_aIII PF09099.10 BAD85766.1 - 1.7 9.1 11.0 6 7.3 0.1 5.5 5 1 0 6 6 5 0 Quinohemoprotein amine dehydrogenase, alpha subunit domain III Big_1 PF02369.16 BAD85766.1 - 3.5 7.7 9.2 0.29 11.2 0.4 3.9 4 1 1 5 5 5 0 Bacterial Ig-like domain (group 1) ABC2_membrane_2 PF12679.7 BAD85767.1 - 9.5e-37 126.8 3.1 1.4e-36 126.3 3.1 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 BAD85767.1 - 1.4e-05 24.4 17.3 1.4e-05 24.4 17.3 2.2 2 2 1 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 BAD85767.1 - 7.1e-05 22.8 13.9 7.1e-05 22.8 13.9 2.0 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 BAD85767.1 - 0.00011 21.8 19.3 0.00011 21.8 19.3 1.9 2 1 0 2 2 2 1 ABC-2 type transporter Tetraspanin PF00335.20 BAD85767.1 - 0.00017 21.4 0.9 0.0011 18.8 0.2 2.4 2 1 0 2 2 2 1 Tetraspanin family ABC2_membrane_5 PF13346.6 BAD85767.1 - 0.00089 18.9 12.2 0.00089 18.9 12.2 2.1 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC_tran_CTD PF16326.5 BAD85767.1 - 0.022 15.0 4.9 0.036 14.3 4.9 1.3 1 0 0 1 1 1 0 ABC transporter C-terminal domain DUF2236 PF09995.9 BAD85767.1 - 0.1 12.8 0.1 0.6 10.3 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2236) Streptin-Immun PF11083.8 BAD85767.1 - 0.11 12.9 0.8 0.18 12.2 0.8 1.3 1 0 0 1 1 1 0 Lantibiotic streptin immunity protein MbeD_MobD PF04899.12 BAD85767.1 - 0.16 12.1 0.6 0.3 11.2 0.6 1.4 1 0 0 1 1 1 0 MbeD/MobD like DUF2070 PF09843.9 BAD85767.1 - 0.52 8.5 10.8 0.91 7.7 10.8 1.4 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) 60KD_IMP PF02096.20 BAD85767.1 - 1.4 8.8 11.7 0.67 9.8 1.0 2.6 2 1 0 2 2 2 0 60Kd inner membrane protein ABC_tran PF00005.27 BAD85768.1 - 9.2e-29 100.7 0.0 1.6e-28 99.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 BAD85768.1 - 2.1e-11 44.2 1.0 9e-08 32.3 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 BAD85768.1 - 4e-08 33.8 0.1 1.3e-07 32.3 0.1 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) Rad17 PF03215.15 BAD85768.1 - 0.00017 21.6 0.0 0.00026 20.9 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_16 PF13191.6 BAD85768.1 - 0.0086 16.5 0.0 0.016 15.6 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 BAD85768.1 - 0.1 12.9 0.1 0.45 10.8 0.1 2.0 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.6 BAD85768.1 - 0.17 12.3 3.3 0.24 11.9 3.2 1.5 1 1 0 1 1 1 0 AAA domain CxxCxxCC PF03692.15 BAD85769.1 - 7.3e-19 68.3 0.5 1.1e-18 67.6 0.5 1.3 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain DUF3109 PF11307.8 BAD85769.1 - 0.022 14.6 0.0 0.031 14.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3109) SapC PF07277.11 BAD85769.1 - 0.083 12.5 0.0 0.11 12.1 0.0 1.2 1 0 0 1 1 1 0 SapC UPF0113 PF03657.13 BAD85770.1 - 3.1e-15 56.2 0.1 4.9e-15 55.5 0.1 1.3 1 0 0 1 1 1 1 UPF0113 PUA domain UPF0113_N PF17833.1 BAD85770.1 - 7.9e-06 26.4 0.0 1.5e-05 25.5 0.0 1.5 1 0 0 1 1 1 1 UPF0113 Pre-PUA domain TruB-C_2 PF09157.11 BAD85770.1 - 0.081 13.0 0.0 0.17 12.0 0.0 1.5 1 0 0 1 1 1 0 Pseudouridine synthase II TruB, C-terminal Arteri_env PF01606.16 BAD85771.1 - 0.11 12.4 0.1 0.14 12.1 0.1 1.2 1 0 0 1 1 1 0 Arterivirus envelope protein ABC_tran PF00005.27 BAD85777.1 - 1.6e-21 77.3 0.0 2e-21 76.9 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 BAD85777.1 - 2.1e-06 27.8 1.3 0.0075 16.1 0.1 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 BAD85777.1 - 9.3e-06 25.2 0.0 0.011 15.2 0.0 2.3 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 BAD85777.1 - 1.8e-05 25.3 0.0 2.4e-05 25.0 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 BAD85777.1 - 0.00024 20.8 0.0 0.0005 19.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_ATPase PF09818.9 BAD85777.1 - 0.00027 19.9 0.2 0.059 12.2 0.1 2.1 2 0 0 2 2 2 2 Predicted ATPase of the ABC class RsgA_GTPase PF03193.16 BAD85777.1 - 0.0052 16.7 0.0 0.0084 16.0 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_27 PF13514.6 BAD85777.1 - 0.007 16.0 0.0 0.0099 15.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 BAD85777.1 - 0.036 13.8 0.1 0.054 13.2 0.1 1.2 1 0 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.6 BAD85777.1 - 0.048 13.9 0.0 0.082 13.2 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 BAD85777.1 - 0.076 12.6 0.1 0.13 11.8 0.1 1.6 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 BAD85777.1 - 0.13 12.5 0.0 0.23 11.7 0.0 1.4 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.6 BAD85777.1 - 0.14 11.8 0.0 0.17 11.6 0.0 1.3 1 1 0 1 1 1 0 AAA domain PEGA PF08308.11 BAD85778.1 - 5.1e-48 160.8 4.4 4.8e-21 74.4 0.1 4.7 3 1 1 4 4 4 4 PEGA domain CarboxypepD_reg PF13620.6 BAD85778.1 - 3.4e-12 46.5 2.7 0.0021 18.3 0.1 5.1 5 0 0 5 5 5 3 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 BAD85778.1 - 4.2e-05 23.5 0.0 0.034 14.1 0.0 3.1 3 0 0 3 3 3 2 CarboxypepD_reg-like domain fn3_3 PF14686.6 BAD85778.1 - 0.083 12.7 0.9 1.8 8.4 0.3 3.3 4 0 0 4 4 4 0 Polysaccharide lyase family 4, domain II ATPase PF06745.13 BAD85779.1 - 3.2e-92 308.1 0.0 3.6e-92 307.9 0.0 1.0 1 0 0 1 1 1 1 KaiC GvpD PF07088.11 BAD85779.1 - 2.2e-07 29.9 0.0 3.1e-07 29.4 0.0 1.1 1 0 0 1 1 1 1 GvpD gas vesicle protein AAA_25 PF13481.6 BAD85779.1 - 1.7e-06 27.8 0.0 3.4e-06 26.8 0.0 1.4 1 1 0 1 1 1 1 AAA domain Rad51 PF08423.11 BAD85779.1 - 0.0016 17.8 0.3 0.0057 16.0 0.0 1.9 2 0 0 2 2 2 1 Rad51 T2SSE PF00437.20 BAD85779.1 - 0.024 13.7 0.0 0.041 12.9 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein DnaB_C PF03796.15 BAD85779.1 - 0.03 13.7 0.0 0.041 13.2 0.0 1.2 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain PPV_E1_C PF00519.17 BAD85779.1 - 0.035 13.0 0.0 0.06 12.2 0.0 1.3 1 0 0 1 1 1 0 Papillomavirus helicase AAA_24 PF13479.6 BAD85779.1 - 0.054 13.2 0.2 0.31 10.7 0.2 2.1 2 1 0 2 2 2 0 AAA domain MEDS PF14417.6 BAD85779.1 - 0.11 12.4 0.0 0.16 11.8 0.0 1.4 1 0 0 1 1 1 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain AAA_16 PF13191.6 BAD85779.1 - 0.13 12.7 0.0 0.22 11.9 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain HTH_38 PF13936.6 BAD85780.1 - 2.4e-05 24.0 2.0 3.1e-05 23.6 0.2 2.1 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_23 PF13384.6 BAD85780.1 - 2.8e-05 23.7 0.4 0.00015 21.5 0.1 2.1 2 0 0 2 2 2 1 Homeodomain-like domain HTH_20 PF12840.7 BAD85780.1 - 5.4e-05 23.2 0.6 0.00021 21.3 0.0 2.3 2 1 0 2 2 1 1 Helix-turn-helix domain HTH_11 PF08279.12 BAD85780.1 - 7e-05 22.7 0.2 0.0003 20.7 0.0 2.1 2 0 0 2 2 1 1 HTH domain HTH_40 PF14493.6 BAD85780.1 - 7.8e-05 23.1 7.1 0.00037 20.9 7.1 2.1 1 1 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 BAD85780.1 - 8.4e-05 22.0 3.3 0.0028 17.1 0.3 2.8 2 1 0 2 2 2 1 Sigma-70, region 4 ZapB PF06005.12 BAD85780.1 - 0.00015 22.2 15.2 0.00015 22.2 15.2 2.1 1 1 2 3 3 1 1 Cell division protein ZapB HTH_24 PF13412.6 BAD85780.1 - 0.00027 20.4 0.8 0.00089 18.8 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.12 BAD85780.1 - 0.00029 20.5 0.9 0.00058 19.5 0.1 1.9 2 0 0 2 2 1 1 Sigma-70, region 4 bZIP_1 PF00170.21 BAD85780.1 - 0.00036 20.6 5.3 0.00036 20.6 5.3 2.9 1 1 2 3 3 3 1 bZIP transcription factor SOAR PF16533.5 BAD85780.1 - 0.00053 19.9 4.6 0.00094 19.1 4.6 1.5 1 0 0 1 1 1 1 STIM1 Orai1-activating region HTH_29 PF13551.6 BAD85780.1 - 0.0006 19.8 0.0 0.0013 18.7 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn helix HTH_28 PF13518.6 BAD85780.1 - 0.00093 19.3 0.1 0.0019 18.3 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 BAD85780.1 - 0.0014 18.5 0.1 0.0034 17.2 0.1 1.8 1 1 0 1 1 1 1 MarR family bZIP_2 PF07716.15 BAD85780.1 - 0.0017 18.4 4.6 0.0017 18.4 4.6 2.8 1 1 1 2 2 2 1 Basic region leucine zipper KorB PF08535.10 BAD85780.1 - 0.0018 18.2 0.5 0.051 13.6 0.5 2.3 1 1 0 1 1 1 1 KorB domain GerE PF00196.19 BAD85780.1 - 0.0019 17.7 0.1 0.004 16.7 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family DUF3450 PF11932.8 BAD85780.1 - 0.0025 17.2 7.9 0.0025 17.2 7.9 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF3450) HTH_5 PF01022.20 BAD85780.1 - 0.0037 17.1 0.0 0.016 15.0 0.0 2.1 1 1 1 2 2 2 1 Bacterial regulatory protein, arsR family HTH_31 PF13560.6 BAD85780.1 - 0.0039 17.5 0.2 0.01 16.1 0.2 1.8 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 BAD85780.1 - 0.0058 16.7 0.2 0.015 15.4 0.2 1.8 1 0 0 1 1 1 1 Helix-turn-helix GrpE PF01025.19 BAD85780.1 - 0.0075 15.9 10.2 0.015 14.9 10.2 1.5 1 0 0 1 1 1 1 GrpE HTH_DeoR PF08220.12 BAD85780.1 - 0.0078 15.9 0.1 0.017 14.8 0.1 1.6 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_17 PF12728.7 BAD85780.1 - 0.0078 16.4 0.1 0.15 12.3 0.1 2.4 1 1 0 1 1 1 1 Helix-turn-helix domain AAA_13 PF13166.6 BAD85780.1 - 0.012 14.4 6.8 0.013 14.2 6.8 1.2 1 0 0 1 1 1 0 AAA domain GAS PF13851.6 BAD85780.1 - 0.012 15.0 16.5 0.017 14.5 16.5 1.3 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding GreA_GreB_N PF03449.15 BAD85780.1 - 0.012 15.7 6.0 0.012 15.7 6.0 3.4 3 1 1 4 4 3 0 Transcription elongation factor, N-terminal Prefoldin_2 PF01920.20 BAD85780.1 - 0.019 14.9 11.7 0.019 14.9 11.7 2.2 1 1 1 2 2 2 0 Prefoldin subunit Atg14 PF10186.9 BAD85780.1 - 0.021 13.9 5.7 0.023 13.8 5.7 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 Leu_zip PF15294.6 BAD85780.1 - 0.022 14.3 11.7 0.02 14.4 10.6 1.4 1 1 0 1 1 1 0 Leucine zipper DUF3489 PF11994.8 BAD85780.1 - 0.025 14.6 0.4 0.055 13.5 0.4 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3489) HALZ PF02183.18 BAD85780.1 - 0.028 14.7 4.3 0.028 14.7 4.3 2.8 1 1 1 2 2 2 0 Homeobox associated leucine zipper GIT_CC PF16559.5 BAD85780.1 - 0.029 14.2 2.9 0.081 12.8 2.6 1.9 1 1 0 1 1 1 0 GIT coiled-coil Rho guanine nucleotide exchange factor YabA PF06156.13 BAD85780.1 - 0.031 14.9 9.0 0.031 14.9 9.0 2.1 1 1 0 2 2 2 0 Initiation control protein YabA TSC22 PF01166.18 BAD85780.1 - 0.036 14.4 8.3 0.036 14.4 8.3 2.6 1 1 1 2 2 2 0 TSC-22/dip/bun family LMP PF04778.12 BAD85780.1 - 0.038 13.9 7.6 0.046 13.6 6.9 1.5 1 1 0 1 1 1 0 LMP repeated region FapA PF03961.13 BAD85780.1 - 0.042 12.5 10.9 0.05 12.2 10.9 1.1 1 0 0 1 1 1 0 Flagellar Assembly Protein A NPV_P10 PF05531.12 BAD85780.1 - 0.044 14.2 2.2 0.044 14.2 2.2 2.0 3 0 0 3 3 1 0 Nucleopolyhedrovirus P10 protein AKNA PF12443.8 BAD85780.1 - 0.047 14.4 0.6 0.081 13.6 0.6 1.5 1 0 0 1 1 1 0 AT-hook-containing transcription factor HTH_19 PF12844.7 BAD85780.1 - 0.05 13.6 0.2 0.05 13.6 0.2 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_IclR PF09339.10 BAD85780.1 - 0.052 13.4 0.1 0.11 12.3 0.1 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain JIP_LZII PF16471.5 BAD85780.1 - 0.053 13.7 19.8 0.05 13.8 15.5 2.6 1 1 1 2 2 2 0 JNK-interacting protein leucine zipper II Phage_GP20 PF06810.11 BAD85780.1 - 0.057 13.2 10.4 0.054 13.3 9.4 1.5 1 1 0 1 1 1 0 Phage minor structural protein GP20 BRI3BP PF14965.6 BAD85780.1 - 0.074 12.6 1.0 0.14 11.7 1.0 1.5 1 0 0 1 1 1 0 Negative regulator of p53/TP53 Stk19 PF10494.9 BAD85780.1 - 0.075 12.7 3.7 0.1 12.3 3.7 1.1 1 0 0 1 1 1 0 Serine-threonine protein kinase 19 HTH_7 PF02796.15 BAD85780.1 - 0.09 12.9 0.1 0.31 11.2 0.1 2.0 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase PilJ PF13675.6 BAD85780.1 - 0.1 12.6 2.9 0.73 9.9 0.8 2.1 1 1 1 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term DUF4795 PF16043.5 BAD85780.1 - 0.1 12.2 10.4 0.14 11.7 10.4 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4795) BLOC1_2 PF10046.9 BAD85780.1 - 0.13 12.6 10.0 0.17 12.2 8.4 2.0 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Spc7 PF08317.11 BAD85780.1 - 0.13 11.1 15.8 0.17 10.8 15.8 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein DUF5082 PF16888.5 BAD85780.1 - 0.14 12.4 6.2 0.088 13.1 3.9 1.9 2 0 0 2 2 1 0 Domain of unknown function (DUF5082) CorA PF01544.18 BAD85780.1 - 0.14 11.4 4.3 0.2 11.0 4.3 1.1 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein HTH_Tnp_Tc3_1 PF11427.8 BAD85780.1 - 0.14 12.0 0.0 0.47 10.3 0.0 1.9 1 0 0 1 1 1 0 Tc3 transposase HTH_Tnp_1 PF01527.20 BAD85780.1 - 0.15 12.4 8.0 38 4.7 8.0 2.8 1 1 0 1 1 1 0 Transposase TPR_MLP1_2 PF07926.12 BAD85780.1 - 0.16 12.1 17.0 1.4 8.9 17.0 2.0 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein AAA_23 PF13476.6 BAD85780.1 - 0.16 12.5 9.5 0.19 12.2 9.5 1.1 1 0 0 1 1 1 0 AAA domain Laminin_II PF06009.12 BAD85780.1 - 0.16 12.0 9.2 1.3 9.0 9.2 2.1 1 1 0 1 1 1 0 Laminin Domain II Phlebovirus_NSM PF07246.11 BAD85780.1 - 0.17 11.3 5.1 0.2 11.0 5.1 1.2 1 0 0 1 1 1 0 Phlebovirus nonstructural protein NS-M FlaC_arch PF05377.11 BAD85780.1 - 0.17 12.3 12.1 0.085 13.3 6.2 3.1 1 1 1 3 3 3 0 Flagella accessory protein C (FlaC) Baculo_PEP_C PF04513.12 BAD85780.1 - 0.18 11.8 1.2 0.43 10.6 0.7 1.8 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF4407 PF14362.6 BAD85780.1 - 0.2 11.0 5.7 0.27 10.6 5.7 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) DUF1515 PF07439.11 BAD85780.1 - 0.21 11.6 5.0 1.7 8.7 4.9 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF1515) Shugoshin_N PF07558.11 BAD85780.1 - 0.21 11.5 4.6 0.23 11.4 2.7 2.1 2 0 0 2 2 1 0 Shugoshin N-terminal coiled-coil region Prominin PF05478.11 BAD85780.1 - 0.22 9.5 5.5 0.31 8.9 5.5 1.3 1 1 0 1 1 1 0 Prominin KfrA_N PF11740.8 BAD85780.1 - 0.33 11.6 10.0 0.51 11.0 9.6 1.6 1 1 0 1 1 1 0 Plasmid replication region DNA-binding N-term DUF4988 PF16378.5 BAD85780.1 - 0.36 10.5 3.5 0.25 11.0 1.9 1.5 2 0 0 2 2 1 0 Domain of unknown function DUF883 PF05957.13 BAD85780.1 - 0.36 11.5 12.6 4.7 7.9 2.4 3.1 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF883) HisKA_3 PF07730.13 BAD85780.1 - 0.49 10.9 5.4 1.8 9.1 0.4 3.0 2 1 1 3 3 3 0 Histidine kinase CENP-F_leu_zip PF10473.9 BAD85780.1 - 0.49 10.4 20.4 0.5 10.4 19.4 1.6 1 1 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF1664 PF07889.12 BAD85780.1 - 0.52 10.4 7.8 0.35 10.9 5.6 1.8 1 1 1 2 2 1 0 Protein of unknown function (DUF1664) DivIVA PF05103.13 BAD85780.1 - 0.59 10.2 14.1 0.12 12.4 7.5 2.6 2 1 1 3 3 3 0 DivIVA protein CLZ PF16526.5 BAD85780.1 - 0.61 10.5 17.4 0.11 12.9 11.3 2.5 2 1 1 3 3 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels DUF16 PF01519.16 BAD85780.1 - 0.67 10.5 13.1 6 7.4 13.1 2.1 1 1 0 1 1 1 0 Protein of unknown function DUF16 Occludin_ELL PF07303.13 BAD85780.1 - 0.76 10.5 7.6 0.27 12.0 4.1 1.8 2 0 0 2 2 1 0 Occludin homology domain YojJ PF10372.9 BAD85780.1 - 0.77 9.9 3.7 0.72 10.0 2.0 1.8 2 0 0 2 2 1 0 Bacterial membrane-spanning protein N-terminus UPF0242 PF06785.11 BAD85780.1 - 0.77 9.8 16.4 1.7 8.7 16.4 1.7 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus DUF3708 PF12501.8 BAD85780.1 - 0.81 9.5 2.8 6.5 6.5 2.8 2.4 1 1 0 1 1 1 0 Phosphate ATP-binding cassette transporter Fib_alpha PF08702.10 BAD85780.1 - 0.83 9.8 6.2 2.2 8.5 6.2 1.8 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family V_ATPase_I PF01496.19 BAD85780.1 - 0.96 7.3 4.9 1.1 7.1 4.9 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF4337 PF14235.6 BAD85780.1 - 1 9.4 6.8 0.99 9.5 6.1 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4337) Nup54 PF13874.6 BAD85780.1 - 1.1 9.4 9.5 0.74 9.9 6.9 1.8 1 1 1 2 2 2 0 Nucleoporin complex subunit 54 DUF4200 PF13863.6 BAD85780.1 - 1.2 9.5 18.3 6.2 7.3 18.1 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4200) DUF948 PF06103.11 BAD85780.1 - 1.3 9.4 9.9 0.94 9.8 3.4 2.5 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) Med30 PF11315.8 BAD85780.1 - 1.3 9.2 9.5 3.9 7.7 9.4 1.7 1 1 1 2 2 2 0 Mediator complex subunit 30 DUF2730 PF10805.8 BAD85780.1 - 1.4 9.1 9.3 1.1 9.3 7.1 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF2730) DUF4446 PF14584.6 BAD85780.1 - 1.4 8.9 7.3 0.92 9.5 5.4 1.7 1 1 1 2 2 1 0 Protein of unknown function (DUF4446) DMPK_coil PF08826.10 BAD85780.1 - 1.4 9.1 16.3 2.7 8.2 12.2 2.6 1 1 1 2 2 2 0 DMPK coiled coil domain like Seryl_tRNA_N PF02403.22 BAD85780.1 - 1.5 9.1 13.8 4.5 7.6 13.3 2.2 1 1 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain Rx_N PF18052.1 BAD85780.1 - 1.7 9.0 9.0 3.1 8.1 7.7 2.2 1 1 0 1 1 1 0 Rx N-terminal domain Syntaxin-6_N PF09177.11 BAD85780.1 - 1.7 9.3 8.9 8.4 7.0 8.9 2.1 1 1 0 1 1 1 0 Syntaxin 6, N-terminal Macoilin PF09726.9 BAD85780.1 - 1.7 7.1 15.4 1.9 6.9 15.4 1.0 1 0 0 1 1 1 0 Macoilin family TMF_DNA_bd PF12329.8 BAD85780.1 - 2 8.5 20.7 0.28 11.2 15.8 1.9 2 1 1 3 3 2 0 TATA element modulatory factor 1 DNA binding DUF4164 PF13747.6 BAD85780.1 - 2.1 8.7 13.1 6.1 7.2 8.6 2.5 1 1 0 2 2 2 0 Domain of unknown function (DUF4164) Ax_dynein_light PF10211.9 BAD85780.1 - 3 7.7 15.4 9.5 6.1 15.1 1.9 1 1 0 1 1 1 0 Axonemal dynein light chain APG6_N PF17675.1 BAD85780.1 - 3.1 8.3 18.7 6 7.4 18.7 1.6 1 1 0 1 1 1 0 Apg6 coiled-coil region DUF465 PF04325.13 BAD85780.1 - 3.5 7.7 16.0 17 5.6 12.3 3.2 2 1 1 3 3 3 0 Protein of unknown function (DUF465) EMP24_GP25L PF01105.24 BAD85780.1 - 4 7.4 5.5 5.2 7.0 5.0 1.4 1 1 0 1 1 1 0 emp24/gp25L/p24 family/GOLD Fmp27_WPPW PF10359.9 BAD85780.1 - 4.9 5.9 8.4 2.6 6.8 6.8 1.4 1 1 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain COG2 PF06148.11 BAD85780.1 - 5.4 7.1 12.1 5.8 7.0 5.9 2.2 2 0 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 KxDL PF10241.9 BAD85780.1 - 5.9 7.2 9.4 2.7 8.3 6.3 1.9 2 0 0 2 2 1 0 Uncharacterized conserved protein TMPIT PF07851.13 BAD85780.1 - 6.2 6.0 9.2 2.7 7.1 6.5 1.6 1 1 1 2 2 2 0 TMPIT-like protein XhlA PF10779.9 BAD85780.1 - 6.4 7.1 15.0 1.3 9.3 7.7 2.8 2 1 0 2 2 2 0 Haemolysin XhlA DivIC PF04977.15 BAD85780.1 - 6.9 6.5 15.3 8.1 6.3 11.0 3.0 2 2 1 3 3 1 0 Septum formation initiator DUF4140 PF13600.6 BAD85780.1 - 7.2 7.1 8.6 24 5.5 8.6 2.1 1 1 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) HNOBA PF07701.14 BAD85780.1 - 7.4 5.9 7.7 8.7 5.7 6.5 1.7 2 0 0 2 2 1 0 Heme NO binding associated Swi5 PF07061.11 BAD85780.1 - 7.6 6.7 13.0 15 5.8 8.6 3.0 1 1 0 2 2 2 0 Swi5 M PF02370.16 BAD85780.1 - 8.9 7.3 14.3 1.4 9.7 5.4 3.0 1 1 1 2 2 2 0 M protein repeat OmpH PF03938.14 BAD85780.1 - 9.3 6.6 15.4 3 8.2 9.8 2.0 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) AdoMet_dc PF02675.15 BAD85781.1 - 7.4e-39 132.3 0.0 9.3e-39 132.0 0.0 1.1 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase SecD_SecF PF02355.16 BAD85782.1 - 1e-31 109.8 11.9 1.4e-31 109.3 11.9 1.2 1 0 0 1 1 1 1 Protein export membrane protein Patched PF02460.18 BAD85782.1 - 4.8e-06 25.0 9.8 6.3e-06 24.6 9.8 1.1 1 0 0 1 1 1 1 Patched family MMPL PF03176.15 BAD85782.1 - 0.0002 20.4 15.0 0.00032 19.7 15.0 1.2 1 0 0 1 1 1 1 MMPL family ACR_tran PF00873.19 BAD85782.1 - 0.0096 13.6 9.4 0.013 13.2 9.4 1.2 1 0 0 1 1 1 1 AcrB/AcrD/AcrF family Sec_GG PF07549.14 BAD85782.1 - 0.051 13.1 0.0 0.12 11.9 0.0 1.7 1 0 0 1 1 1 0 SecD/SecF GG Motif Smr PF01713.21 BAD85782.1 - 0.095 13.1 0.0 0.18 12.2 0.0 1.4 1 0 0 1 1 1 0 Smr domain BAT PF15915.5 BAD85782.1 - 0.22 11.4 0.0 0.4 10.5 0.0 1.3 1 0 0 1 1 1 0 GAF and HTH_10 associated domain SecD_SecF PF02355.16 BAD85783.1 - 1.1e-19 70.6 8.0 2.1e-19 69.7 8.0 1.3 1 0 0 1 1 1 1 Protein export membrane protein Sec_GG PF07549.14 BAD85783.1 - 0.00037 19.9 0.1 0.00095 18.6 0.1 1.8 1 0 0 1 1 1 1 SecD/SecF GG Motif MMPL PF03176.15 BAD85783.1 - 0.0024 16.9 11.1 0.0041 16.1 11.1 1.3 1 0 0 1 1 1 1 MMPL family Patched PF02460.18 BAD85783.1 - 0.1 10.6 7.4 0.16 10.0 7.4 1.2 1 0 0 1 1 1 0 Patched family RimM PF01782.18 BAD85783.1 - 0.11 12.7 0.0 0.22 11.8 0.0 1.4 1 0 0 1 1 1 0 RimM N-terminal domain TrkA_N PF02254.18 BAD85784.1 - 1.1e-29 103.1 0.2 3.1e-29 101.6 0.2 1.7 2 0 0 2 2 2 1 TrkA-N domain TrkA_C PF02080.21 BAD85784.1 - 9.5e-17 60.6 0.2 4.7e-16 58.4 0.1 2.2 3 0 0 3 3 3 1 TrkA-C domain ApbA PF02558.16 BAD85784.1 - 5.3e-06 26.1 0.0 8.5e-06 25.5 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_10 PF13460.6 BAD85784.1 - 5.1e-05 23.2 0.1 8.3e-05 22.6 0.1 1.4 1 0 0 1 1 1 1 NAD(P)H-binding Shikimate_DH PF01488.20 BAD85784.1 - 0.00015 21.9 0.5 0.00029 20.9 0.2 1.8 2 1 0 2 2 1 1 Shikimate / quinate 5-dehydrogenase Sacchrp_dh_NADP PF03435.18 BAD85784.1 - 0.00023 21.4 0.1 0.00045 20.5 0.2 1.6 2 1 0 2 2 1 1 Saccharopine dehydrogenase NADP binding domain NmrA PF05368.13 BAD85784.1 - 0.00024 20.8 0.1 0.00048 19.7 0.1 1.4 1 0 0 1 1 1 1 NmrA-like family UDPG_MGDP_dh_N PF03721.14 BAD85784.1 - 0.00077 19.1 0.3 0.0021 17.7 0.1 1.8 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AlaDh_PNT_C PF01262.21 BAD85784.1 - 0.0017 17.7 0.1 0.0024 17.2 0.1 1.2 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_3 PF01494.19 BAD85784.1 - 0.0038 16.5 0.1 0.0053 16.1 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain F420_oxidored PF03807.17 BAD85784.1 - 0.0038 17.8 0.1 0.0097 16.5 0.1 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.18 BAD85784.1 - 0.0038 17.1 0.1 0.0066 16.3 0.1 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Thi4 PF01946.17 BAD85784.1 - 0.0044 16.3 0.1 0.008 15.4 0.1 1.4 1 0 0 1 1 1 1 Thi4 family NAD_Gly3P_dh_N PF01210.23 BAD85784.1 - 0.0071 16.3 0.0 0.02 14.9 0.0 1.8 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Pyr_redox PF00070.27 BAD85784.1 - 0.01 16.4 0.0 0.026 15.1 0.0 1.7 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.6 BAD85784.1 - 0.011 16.2 0.1 0.024 15.1 0.1 1.6 1 1 0 1 1 1 0 Putative NAD(P)-binding Pyr_redox_2 PF07992.14 BAD85784.1 - 0.012 14.9 0.0 0.014 14.7 0.0 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase XdhC_C PF13478.6 BAD85784.1 - 0.014 15.9 0.0 0.022 15.2 0.0 1.3 1 0 0 1 1 1 0 XdhC Rossmann domain Erp_C PF06780.11 BAD85784.1 - 0.04 13.9 1.6 0.6 10.1 1.3 2.3 1 1 1 2 2 2 0 Erp protein C-terminus Epimerase PF01370.21 BAD85784.1 - 0.043 13.3 0.0 0.054 13.0 0.0 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family NAD_binding_8 PF13450.6 BAD85784.1 - 0.048 13.9 0.0 0.1 12.8 0.0 1.6 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain DAO PF01266.24 BAD85784.1 - 0.071 12.7 0.0 0.088 12.4 0.0 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase 2-Hacid_dh_C PF02826.19 BAD85784.1 - 0.08 12.3 0.1 0.11 11.8 0.1 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.21 BAD85784.1 - 0.081 13.0 0.2 0.16 12.0 0.2 1.8 1 1 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Rossmann-like PF10727.9 BAD85784.1 - 0.12 12.2 0.0 0.22 11.4 0.0 1.4 1 0 0 1 1 1 0 Rossmann-like domain adh_short_C2 PF13561.6 BAD85784.1 - 0.13 11.8 0.2 0.45 10.0 0.2 1.8 2 0 0 2 2 2 0 Enoyl-(Acyl carrier protein) reductase NAD_binding_2 PF03446.15 BAD85784.1 - 0.15 12.3 0.0 1.1 9.4 0.0 2.1 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase HI0933_like PF03486.14 BAD85784.1 - 0.18 10.5 0.1 0.27 9.9 0.1 1.3 1 0 0 1 1 1 0 HI0933-like protein Glyco_transf_4 PF13439.6 BAD85784.1 - 0.19 11.7 0.0 0.44 10.5 0.0 1.7 2 0 0 2 2 2 0 Glycosyltransferase Family 4 Trp_halogenase PF04820.14 BAD85784.1 - 0.19 10.5 0.0 0.28 10.0 0.0 1.2 1 0 0 1 1 1 0 Tryptophan halogenase ATP-synt_B PF00430.18 BAD85785.1 - 1.3e-07 31.7 35.6 1e-05 25.7 16.8 2.0 1 1 1 2 2 2 2 ATP synthase B/B' CF(0) V-ATPase_G_2 PF16999.5 BAD85785.1 - 9e-07 29.3 20.7 9e-07 29.3 20.7 1.9 1 1 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit V-ATPase_G PF03179.15 BAD85785.1 - 0.00012 22.6 26.3 0.00034 21.1 26.3 1.6 1 1 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit DUF3552 PF12072.8 BAD85785.1 - 0.00027 20.4 25.6 0.018 14.5 12.4 2.0 1 1 1 2 2 2 2 Domain of unknown function (DUF3552) DivIVA PF05103.13 BAD85785.1 - 0.0037 17.4 20.7 0.012 15.7 11.2 2.2 1 1 1 2 2 2 2 DivIVA protein DUF883 PF05957.13 BAD85785.1 - 0.27 11.8 12.2 0.25 11.9 3.4 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) Telomere_reg-2 PF10193.9 BAD85785.1 - 1.4 9.3 7.4 3.2 8.2 2.1 2.4 1 1 0 2 2 2 0 Telomere length regulation protein HrpE PF06188.12 BAD85785.1 - 1.5 8.7 9.2 3.9 7.3 9.2 1.6 1 1 0 1 1 1 0 HrpE/YscL/FliH and V-type ATPase subunit E CENP-H PF05837.12 BAD85785.1 - 1.5 9.2 12.2 2.2 8.7 12.2 1.3 1 0 0 1 1 1 0 Centromere protein H (CENP-H) RRF PF01765.19 BAD85785.1 - 1.9 8.4 18.5 1.8 8.5 16.4 1.8 1 1 1 2 2 2 0 Ribosome recycling factor MAT1 PF06391.13 BAD85785.1 - 2.2 8.0 19.5 2.5 7.9 19.5 1.0 1 0 0 1 1 1 0 CDK-activating kinase assembly factor MAT1 RNase_J_C PF17770.1 BAD85785.1 - 2.7 9.1 12.9 4.9 8.3 1.6 2.2 1 1 1 2 2 2 0 Ribonuclease J C-terminal domain UPF0242 PF06785.11 BAD85785.1 - 3.2 7.8 15.2 3.7 7.6 15.2 1.0 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus DUF262 PF03235.14 BAD85785.1 - 3.7 7.6 8.5 4.7 7.3 8.5 1.0 1 0 0 1 1 1 0 Protein of unknown function DUF262 Borrelia_P83 PF05262.11 BAD85785.1 - 4.3 5.7 18.6 5.5 5.4 18.6 1.1 1 0 0 1 1 1 0 Borrelia P83/100 protein Mitofilin PF09731.9 BAD85785.1 - 4.7 5.9 24.0 5.2 5.8 24.0 1.0 1 0 0 1 1 1 0 Mitochondrial inner membrane protein Nbl1_Borealin_N PF10444.9 BAD85785.1 - 9.4 6.0 11.5 12 5.7 0.4 3.1 2 1 1 3 3 3 0 Nbl1 / Borealin N terminal V_ATPase_I PF01496.19 BAD85786.1 - 4.1e-37 127.6 5.6 8.8e-24 83.5 0.1 3.4 2 1 0 2 2 2 2 V-type ATPase 116kDa subunit family V_ATPase_I_N PF18670.1 BAD85786.1 - 0.0051 17.2 0.4 0.0051 17.2 0.4 2.1 2 0 0 2 2 2 1 V-type ATPase subunit I, N-terminal domain FlaC_arch PF05377.11 BAD85786.1 - 0.023 15.1 4.4 0.069 13.5 0.4 2.5 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) AAA_23 PF13476.6 BAD85786.1 - 0.093 13.2 3.8 0.84 10.1 0.5 2.2 2 0 0 2 2 2 0 AAA domain Prefoldin_2 PF01920.20 BAD85786.1 - 0.17 11.8 6.4 1.9 8.5 0.2 2.6 2 0 0 2 2 2 0 Prefoldin subunit NiFe_hyd_3_EhaA PF17367.2 BAD85786.1 - 0.17 12.0 4.3 1.1 9.4 0.1 3.1 2 0 0 2 2 2 0 NiFe-hydrogenase-type-3 Eha complex subunit A DHHA1 PF02272.19 BAD85786.1 - 0.2 12.1 5.1 9.7 6.6 0.8 3.2 3 0 0 3 3 3 0 DHHA1 domain Fib_alpha PF08702.10 BAD85786.1 - 1.2 9.4 2.6 35 4.5 0.4 2.3 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family ATP-synt_C PF00137.21 BAD85787.1 - 4.4e-30 103.8 30.0 1.1e-15 57.8 11.2 2.4 2 0 0 2 2 2 2 ATP synthase subunit C vATP-synt_E PF01991.18 BAD85788.1 - 1.2e-39 135.8 16.9 1.4e-39 135.6 16.9 1.0 1 0 0 1 1 1 1 ATP synthase (E/31 kDa) subunit DUF3552 PF12072.8 BAD85788.1 - 0.0039 16.6 22.6 0.18 11.2 12.0 2.6 1 1 1 2 2 2 2 Domain of unknown function (DUF3552) Y_phosphatase3 PF13350.6 BAD85788.1 - 0.093 12.7 1.4 0.16 12.0 1.4 1.3 1 0 0 1 1 1 0 Tyrosine phosphatase family HrpE PF06188.12 BAD85788.1 - 0.1 12.5 10.0 0.15 11.9 10.0 1.3 1 0 0 1 1 1 0 HrpE/YscL/FliH and V-type ATPase subunit E Borrelia_P83 PF05262.11 BAD85788.1 - 0.15 10.5 7.4 0.17 10.4 7.4 1.2 1 0 0 1 1 1 0 Borrelia P83/100 protein ATP-synt_B PF00430.18 BAD85788.1 - 0.32 11.1 27.3 0.53 10.4 6.6 2.5 2 1 1 3 3 3 0 ATP synthase B/B' CF(0) DFF40 PF09230.10 BAD85788.1 - 0.42 10.2 4.1 0.59 9.7 4.1 1.3 1 0 0 1 1 1 0 DNA fragmentation factor 40 kDa YtxH PF12732.7 BAD85788.1 - 0.82 10.2 9.1 1.8e+02 2.8 9.1 2.5 1 1 0 1 1 1 0 YtxH-like protein FtsA PF14450.6 BAD85788.1 - 3.1 8.2 4.6 12 6.4 4.6 1.9 1 1 0 1 1 1 0 Cell division protein FtsA CinA_KH PF18146.1 BAD85788.1 - 3.7 7.8 10.7 8 6.7 0.0 3.5 2 1 1 3 3 3 0 Damage-inducible protein CinA KH domain POTRA_TamA_1 PF17243.2 BAD85788.1 - 8.3 6.6 10.9 28 4.9 3.1 3.5 2 1 0 3 3 3 0 POTRA domain TamA domain 1 vATP-synt_AC39 PF01992.16 BAD85789.1 - 2.8e-70 237.5 8.1 3.2e-70 237.3 8.1 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit ATP-synt_F PF01990.17 BAD85790.1 - 4.9e-19 68.4 0.3 7.4e-19 67.9 0.3 1.3 1 1 0 1 1 1 1 ATP synthase (F/14-kDa) subunit ATP-synt_ab PF00006.25 BAD85791.1 - 5e-93 310.6 0.0 7.7e-93 310.0 0.0 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_Xtn PF16886.5 BAD85791.1 - 1.7e-49 166.7 0.2 3.1e-49 165.8 0.2 1.5 1 0 0 1 1 1 1 ATPsynthase alpha/beta subunit N-term extension ATP-synt_ab_N PF02874.23 BAD85791.1 - 1.6e-15 57.4 4.4 6.2e-15 55.5 4.4 2.1 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain AAA_22 PF13401.6 BAD85791.1 - 0.034 14.4 0.0 0.082 13.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.25 BAD85792.1 - 1.1e-68 231.0 0.0 1.5e-68 230.6 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 BAD85792.1 - 3.2e-13 50.0 2.3 3.2e-13 50.0 2.3 1.8 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.10 BAD85792.1 - 8e-05 22.7 1.0 8e-05 22.7 1.0 2.0 2 0 0 2 2 2 1 HAS barrel domain ATP-synt_D PF01813.17 BAD85793.1 - 4.3e-62 209.4 14.1 4.8e-62 209.3 14.1 1.0 1 0 0 1 1 1 1 ATP synthase subunit D BLOC1_2 PF10046.9 BAD85793.1 - 0.17 12.2 3.0 2.2 8.6 1.0 2.3 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 MutS_IV PF05190.18 BAD85793.1 - 0.25 11.7 2.4 13 6.2 0.1 2.7 2 1 0 2 2 2 0 MutS family domain IV Noelin-1 PF12308.8 BAD85793.1 - 0.82 9.7 3.1 1.3 9.0 0.4 2.3 2 0 0 2 2 2 0 Neurogenesis glycoprotein Lactamase_B PF00753.27 BAD85794.1 - 9.4e-20 71.4 0.4 1.4e-19 70.9 0.4 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily MCPsignal PF00015.21 BAD85795.1 - 3.7e-28 98.5 13.7 3.7e-28 98.5 13.7 2.2 1 1 1 2 2 2 1 Methyl-accepting chemotaxis protein (MCP) signalling domain Dor1 PF04124.12 BAD85795.1 - 0.0012 17.6 7.5 0.029 13.1 0.9 2.9 1 1 2 3 3 3 1 Dor1-like family DASH_Dam1 PF08653.10 BAD85795.1 - 0.003 17.3 10.0 8 6.3 0.0 4.8 3 2 1 4 4 4 0 DASH complex subunit Dam1 Mce4_CUP1 PF11887.8 BAD85795.1 - 0.0052 16.3 0.5 0.24 10.8 0.2 2.3 1 1 1 2 2 2 1 Cholesterol uptake porter CUP1 of Mce4, putative MCC-bdg_PDZ PF10506.9 BAD85795.1 - 0.039 14.0 2.5 0.21 11.6 0.2 3.0 3 1 0 3 3 3 0 PDZ domain of MCC-2 bdg protein for Usher syndrome Sec34 PF04136.15 BAD85795.1 - 0.049 13.5 4.6 1.9 8.4 0.1 2.6 2 1 0 2 2 2 0 Sec34-like family DUF948 PF06103.11 BAD85795.1 - 0.05 13.9 7.7 8.9 6.7 3.9 3.8 1 1 3 4 4 4 0 Bacterial protein of unknown function (DUF948) TetR PF13972.6 BAD85795.1 - 0.11 12.1 2.0 4.3 7.1 0.1 3.0 1 1 2 3 3 3 0 Bacterial transcriptional repressor BAG6 PF12057.8 BAD85795.1 - 0.14 11.8 0.7 0.83 9.4 0.1 2.3 2 1 0 2 2 2 0 BCL2-associated athanogene 6 LOH1CR12 PF10158.9 BAD85795.1 - 0.15 12.1 8.8 1.6 8.7 1.0 3.3 1 1 1 3 3 3 0 Tumour suppressor protein ALIX_LYPXL_bnd PF13949.6 BAD85795.1 - 0.15 11.3 10.4 0.15 11.4 2.8 2.5 1 1 1 2 2 2 0 ALIX V-shaped domain binding to HIV BAR PF03114.18 BAD85795.1 - 0.34 10.5 5.9 3.2 7.3 0.1 3.3 1 1 2 3 3 3 0 BAR domain COG5 PF10392.9 BAD85795.1 - 0.56 10.4 7.3 11 6.2 0.5 3.3 2 2 2 4 4 4 0 Golgi transport complex subunit 5 COG2 PF06148.11 BAD85795.1 - 1.4 9.0 10.2 1.6 8.8 0.7 3.4 2 2 1 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 eIF3_N PF09440.10 BAD85795.1 - 1.6 9.2 7.1 14 6.1 1.5 2.9 2 2 1 3 3 3 0 eIF3 subunit 6 N terminal domain DUF2935 PF11155.8 BAD85795.1 - 2.2 8.6 8.4 36 4.7 7.0 3.1 1 1 1 2 2 2 0 Domain of unknown function (DUF2935) WXG100 PF06013.12 BAD85795.1 - 2.9 8.2 9.1 16 5.8 0.2 4.7 3 3 0 4 4 4 0 Proteins of 100 residues with WXG DASH_Dad4 PF08650.10 BAD85795.1 - 3.1 7.8 14.5 3.6 7.6 0.4 4.5 3 2 2 5 5 5 0 DASH complex subunit Dad4 DUF1664 PF07889.12 BAD85795.1 - 3.3 7.8 11.9 6.3 6.9 3.9 3.2 2 2 2 4 4 4 0 Protein of unknown function (DUF1664) GP41 PF00517.17 BAD85795.1 - 3.3 7.5 5.7 19 5.1 0.1 3.0 2 1 0 3 3 3 0 Retroviral envelope protein YlqD PF11068.8 BAD85795.1 - 5.6 7.4 9.8 4.1 7.8 1.7 2.7 1 1 0 2 2 2 0 YlqD protein Fib_alpha PF08702.10 BAD85795.1 - 6.6 6.9 15.0 17 5.5 1.5 3.6 1 1 2 3 3 3 0 Fibrinogen alpha/beta chain family BORCS8 PF10167.9 BAD85795.1 - 7 6.6 9.7 1 9.3 0.5 3.4 3 2 2 5 5 5 0 BLOC-1-related complex sub-unit 8 Streptin-Immun PF11083.8 BAD85795.1 - 8.8 6.8 9.8 2.3 8.7 0.5 3.7 2 2 1 3 3 3 0 Lantibiotic streptin immunity protein DHHA1 PF02272.19 BAD85796.1 - 4.2e-14 53.1 0.6 9.3e-14 52.0 0.6 1.6 1 0 0 1 1 1 1 DHHA1 domain tRNA-synt_2c PF01411.19 BAD85796.1 - 8.2e-12 44.4 0.0 1.4e-11 43.7 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.14 BAD85796.1 - 2.4e-11 43.5 1.7 3.8e-11 42.9 0.5 2.0 2 0 0 2 2 2 1 Threonyl and Alanyl tRNA synthetase second additional domain ZapB PF06005.12 BAD85796.1 - 0.015 15.8 0.8 0.039 14.4 0.8 1.7 1 0 0 1 1 1 0 Cell division protein ZapB RPW8 PF05659.11 BAD85796.1 - 0.03 14.0 0.3 0.072 12.8 0.3 1.6 1 0 0 1 1 1 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 Swi5 PF07061.11 BAD85796.1 - 0.12 12.4 2.0 1.3 9.1 0.3 2.5 2 0 0 2 2 2 0 Swi5 DivIC PF04977.15 BAD85796.1 - 0.21 11.4 1.5 0.51 10.1 1.5 1.6 1 0 0 1 1 1 0 Septum formation initiator DUF257 PF03192.13 BAD85797.1 - 3.1e-87 291.7 0.6 3.6e-87 291.5 0.6 1.0 1 0 0 1 1 1 1 Pyrococcus protein of unknown function, DUF257 DUF257 PF03192.13 BAD85798.1 - 9.2e-81 270.5 1.4 1.2e-80 270.1 1.4 1.0 1 0 0 1 1 1 1 Pyrococcus protein of unknown function, DUF257 GTP_EFTU_D4 PF14578.6 BAD85799.1 - 4.4e-19 68.2 0.6 4.4e-19 68.2 0.6 1.5 2 0 0 2 2 2 1 Elongation factor Tu domain 4 GTP_EFTU_D2 PF03144.25 BAD85799.1 - 0.1 13.0 0.7 0.18 12.3 0.2 1.8 2 1 0 2 2 2 0 Elongation factor Tu domain 2 TatD_DNase PF01026.21 BAD85800.1 - 1.9e-31 109.4 0.1 2.2e-31 109.1 0.1 1.0 1 0 0 1 1 1 1 TatD related DNase AP_endonuc_2 PF01261.24 BAD85800.1 - 0.083 12.3 0.1 0.22 11.0 0.0 1.5 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel Pyr_redox_2 PF07992.14 BAD85801.1 - 3.8e-41 141.2 1.5 4.9e-41 140.9 0.5 1.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_20 PF14691.6 BAD85801.1 - 2.7e-24 85.1 3.7 1.7e-18 66.4 0.0 2.6 2 0 0 2 2 2 2 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Pyr_redox_3 PF13738.6 BAD85801.1 - 3.5e-20 72.5 0.1 1.3e-14 54.2 0.0 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 BAD85801.1 - 1.9e-17 63.6 9.2 2.8e-10 40.6 1.0 3.7 4 0 0 4 4 3 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 BAD85801.1 - 8.3e-12 45.2 0.3 7.1e-10 39.0 0.0 3.1 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 BAD85801.1 - 2.2e-08 34.1 5.5 2e-05 24.4 0.1 4.4 3 1 1 4 4 4 1 FAD dependent oxidoreductase FAD_oxidored PF12831.7 BAD85801.1 - 3e-08 33.5 1.9 1.2e-05 24.9 0.0 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase Fer2_4 PF13510.6 BAD85801.1 - 5.2e-08 32.8 0.1 2.7e-07 30.5 0.0 2.3 2 0 0 2 2 1 1 2Fe-2S iron-sulfur cluster binding domain FAD_binding_2 PF00890.24 BAD85801.1 - 6.9e-08 32.0 2.3 0.00027 20.1 0.1 3.2 3 0 0 3 3 3 1 FAD binding domain NAD_binding_7 PF13241.6 BAD85801.1 - 8.8e-08 32.5 0.1 0.00023 21.5 0.1 2.8 2 0 0 2 2 2 2 Putative NAD(P)-binding AlaDh_PNT_C PF01262.21 BAD85801.1 - 2.3e-07 30.4 0.3 0.0045 16.3 0.2 2.3 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain HI0933_like PF03486.14 BAD85801.1 - 1e-06 27.8 1.4 2.4e-05 23.2 0.1 2.2 2 0 0 2 2 2 1 HI0933-like protein PALP PF00291.25 BAD85801.1 - 8e-06 25.5 0.0 0.047 13.1 0.0 2.4 2 0 0 2 2 2 2 Pyridoxal-phosphate dependent enzyme GIDA PF01134.22 BAD85801.1 - 1.3e-05 24.5 2.1 0.014 14.5 0.2 3.2 3 0 0 3 3 3 2 Glucose inhibited division protein A Amino_oxidase PF01593.24 BAD85801.1 - 2.3e-05 23.9 0.0 0.00016 21.1 0.0 2.1 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase XdhC_C PF13478.6 BAD85801.1 - 0.00014 22.4 0.0 0.068 13.7 0.0 2.5 2 0 0 2 2 2 1 XdhC Rossmann domain 2-Hacid_dh_C PF02826.19 BAD85801.1 - 0.00026 20.4 0.2 0.24 10.8 0.1 3.0 2 1 1 3 3 3 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Thi4 PF01946.17 BAD85801.1 - 0.00032 20.0 0.7 0.00092 18.5 0.0 1.9 2 0 0 2 2 2 1 Thi4 family Oxidored_nitro PF00148.19 BAD85801.1 - 0.00044 19.1 0.1 0.58 8.8 0.1 3.1 3 0 0 3 3 3 1 Nitrogenase component 1 type Oxidoreductase FMO-like PF00743.19 BAD85801.1 - 0.00095 17.7 0.0 0.71 8.2 0.0 2.1 2 0 0 2 2 2 2 Flavin-binding monooxygenase-like NADH-G_4Fe-4S_3 PF10588.9 BAD85801.1 - 0.001 18.5 1.6 0.013 15.0 0.0 2.7 2 0 0 2 2 2 1 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region FAD_binding_3 PF01494.19 BAD85801.1 - 0.0011 18.4 2.2 0.014 14.7 0.2 2.2 2 0 0 2 2 2 1 FAD binding domain TrkA_N PF02254.18 BAD85801.1 - 0.0019 18.4 0.8 4 7.7 0.1 3.5 3 0 0 3 3 3 1 TrkA-N domain K_oxygenase PF13434.6 BAD85801.1 - 0.0053 15.9 0.0 0.089 11.9 0.0 2.2 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) Fer4_15 PF13459.6 BAD85801.1 - 0.0058 17.4 0.1 0.039 14.7 0.1 2.6 1 1 0 1 1 1 1 4Fe-4S single cluster domain F420_oxidored PF03807.17 BAD85801.1 - 0.0085 16.7 0.6 4 8.1 0.1 3.6 3 1 0 3 3 2 1 NADP oxidoreductase coenzyme F420-dependent Molybdop_Fe4S4 PF04879.16 BAD85801.1 - 0.015 15.2 1.4 0.015 15.2 1.4 2.2 2 0 0 2 2 2 0 Molybdopterin oxidoreductase Fe4S4 domain Fer4 PF00037.27 BAD85801.1 - 0.028 14.3 0.5 0.028 14.3 0.5 4.9 5 0 0 5 5 4 0 4Fe-4S binding domain Lycopene_cycl PF05834.12 BAD85801.1 - 0.065 12.3 0.4 0.38 9.8 0.1 2.0 2 0 0 2 2 2 0 Lycopene cyclase protein YjeF_N PF03853.15 BAD85801.1 - 0.094 12.6 0.2 10 6.0 0.0 2.3 2 0 0 2 2 2 0 YjeF-related protein N-terminus GPP34 PF05719.11 BAD85801.1 - 0.11 12.5 0.5 0.37 10.8 0.1 2.0 2 0 0 2 2 2 0 Golgi phosphoprotein 3 (GPP34) 3HCDH_N PF02737.18 BAD85801.1 - 0.12 12.3 1.6 9.7 6.0 0.3 2.3 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Complex1_51K PF01512.17 BAD85802.1 - 5.2e-51 172.5 0.0 1.1e-50 171.4 0.0 1.6 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit NADH_4Fe-4S PF10589.9 BAD85802.1 - 2.2e-32 110.9 0.1 2.2e-32 110.9 0.1 2.8 3 0 0 3 3 2 1 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Fer4 PF00037.27 BAD85802.1 - 5.9e-12 44.9 14.3 1.3e-07 31.1 2.2 3.9 4 0 0 4 4 4 2 4Fe-4S binding domain SLBB PF10531.9 BAD85802.1 - 3.5e-09 36.4 0.8 6.5e-09 35.5 0.8 1.5 1 0 0 1 1 1 1 SLBB domain Fer4_9 PF13187.6 BAD85802.1 - 2.5e-07 30.8 10.7 2.5e-07 30.8 10.7 2.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 BAD85802.1 - 3.9e-07 30.1 10.2 3.9e-07 30.1 10.2 3.0 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 BAD85802.1 - 7.2e-07 29.7 15.4 2e-06 28.3 11.4 3.0 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 BAD85802.1 - 1.5e-06 28.0 15.2 5.6e-05 23.0 2.9 4.4 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_2 PF12797.7 BAD85802.1 - 9e-06 25.5 23.8 0.003 17.5 1.7 4.3 3 1 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.6 BAD85802.1 - 1e-05 25.5 24.0 0.00066 19.8 1.6 4.2 4 0 0 4 4 4 2 4Fe-4S dicluster domain 2Fe-2S_thioredx PF01257.19 BAD85802.1 - 0.00023 21.0 0.1 0.001 18.9 0.1 2.0 2 0 0 2 2 2 1 Thioredoxin-like [2Fe-2S] ferredoxin Fer4_16 PF13484.6 BAD85802.1 - 0.0025 18.7 19.7 0.004 18.1 1.7 3.7 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Suc_Fer-like PF06999.12 BAD85802.1 - 0.0044 16.9 0.1 0.0079 16.1 0.1 1.3 1 0 0 1 1 1 1 Sucrase/ferredoxin-like Fer4_4 PF12800.7 BAD85802.1 - 0.045 14.3 23.1 0.057 14.0 3.5 3.5 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_13 PF13370.6 BAD85802.1 - 0.23 12.0 19.0 0.22 12.1 2.6 3.4 3 0 0 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_8 PF13183.6 BAD85802.1 - 2.8 8.5 21.2 0.61 10.6 1.5 3.2 2 1 0 2 2 2 0 4Fe-4S dicluster domain 2Fe-2S_thioredx PF01257.19 BAD85803.1 - 3.9e-55 185.7 0.0 4.5e-55 185.5 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin-like [2Fe-2S] ferredoxin Sigma70_r4 PF04545.16 BAD85803.1 - 0.095 12.2 0.0 0.22 11.1 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 RTC PF01137.21 BAD85804.1 - 2e-79 265.9 0.0 2.2e-79 265.7 0.0 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.13 BAD85804.1 - 4.3e-23 81.8 0.1 6.8e-23 81.1 0.1 1.3 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain BCNT PF07572.12 BAD85805.1 - 0.039 14.0 0.9 0.076 13.1 0.1 1.9 2 0 0 2 2 2 0 Bucentaur or craniofacial development Metallophos_2 PF12850.7 BAD85807.1 - 1.5e-33 116.3 0.2 1.7e-33 116.1 0.2 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 BAD85807.1 - 3.4e-09 37.5 2.7 8.4e-08 32.9 0.1 2.1 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 BAD85807.1 - 1.9e-05 24.1 1.8 0.0048 16.3 0.5 2.1 1 1 1 2 2 2 2 Metallophosphoesterase, calcineurin superfamily ETF PF01012.21 BAD85807.1 - 0.012 15.5 0.1 0.016 15.1 0.1 1.2 1 0 0 1 1 1 0 Electron transfer flavoprotein domain Sld5 PF05916.11 BAD85808.1 - 1.1e-09 38.7 1.8 1.5e-09 38.3 1.8 1.1 1 0 0 1 1 1 1 GINS complex protein MCM PF00493.23 BAD85809.1 - 2.3e-87 291.8 0.1 5.6e-35 120.4 0.0 3.3 3 0 0 3 3 3 3 MCM P-loop domain Intein_splicing PF14890.6 BAD85809.1 - 3.3e-36 124.2 1.2 1.5e-19 70.3 0.2 2.7 2 0 0 2 2 2 2 Intein splicing domain MCM_OB PF17207.3 BAD85809.1 - 4.7e-35 120.2 0.0 9e-35 119.3 0.0 1.4 1 0 0 1 1 1 1 MCM OB domain MCM_lid PF17855.1 BAD85809.1 - 1.3e-30 105.7 1.8 1.3e-30 105.7 1.8 2.0 2 0 0 2 2 1 1 MCM AAA-lid domain MCM_N PF14551.6 BAD85809.1 - 4e-13 49.8 0.1 1.4e-12 48.1 0.1 2.0 1 0 0 1 1 1 1 MCM N-terminal domain AAA_5 PF07728.14 BAD85809.1 - 0.00023 21.2 0.0 0.034 14.2 0.0 2.8 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 BAD85809.1 - 0.0078 16.6 2.7 0.036 14.4 0.0 3.2 4 0 0 4 4 3 1 AAA ATPase domain Zn-ribbon_8 PF09723.10 BAD85809.1 - 0.015 15.4 0.5 0.033 14.3 0.5 1.5 1 0 0 1 1 1 0 Zinc ribbon domain HypA PF01155.19 BAD85809.1 - 0.02 14.9 0.1 0.054 13.5 0.1 1.7 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TackOD1 PF18551.1 BAD85809.1 - 0.039 13.6 0.2 0.085 12.5 0.2 1.5 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 Sigma54_activat PF00158.26 BAD85809.1 - 0.044 13.5 0.0 0.91 9.2 0.0 2.5 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_lid_2 PF17863.1 BAD85809.1 - 0.065 13.1 1.9 3.7 7.5 0.7 2.6 2 0 0 2 2 2 0 AAA lid domain Hint PF01079.20 BAD85809.1 - 0.066 12.7 0.0 0.13 11.7 0.0 1.4 1 0 0 1 1 1 0 Hint module TPR_2 PF07719.17 BAD85809.1 - 0.091 12.9 1.0 7.8 6.9 0.3 3.1 2 0 0 2 2 2 0 Tetratricopeptide repeat Mg_chelatase PF01078.21 BAD85809.1 - 0.11 11.8 0.1 9.3 5.6 0.0 3.0 3 0 0 3 3 3 0 Magnesium chelatase, subunit ChlI AbiEi_4 PF13338.6 BAD85809.1 - 0.13 12.5 0.3 4.1 7.6 0.0 3.2 3 0 0 3 3 3 0 Transcriptional regulator, AbiEi antitoxin AAA_22 PF13401.6 BAD85809.1 - 0.22 11.8 0.6 2.2 8.6 0.0 2.9 3 0 0 3 3 3 0 AAA domain TENA_THI-4 PF03070.16 BAD85809.1 - 0.44 10.3 1.7 4.7 7.0 0.0 2.9 3 0 0 3 3 3 0 TENA/THI-4/PQQC family TPR_8 PF13181.6 BAD85809.1 - 0.49 10.7 1.7 18 5.9 0.5 2.8 2 0 0 2 2 2 0 Tetratricopeptide repeat eIF-5_eIF-2B PF01873.17 BAD85810.1 - 2.5e-37 127.3 0.0 2.9e-37 127.1 0.0 1.1 1 0 0 1 1 1 1 Domain found in IF2B/IF5 Tmemb_55A PF09788.9 BAD85810.1 - 0.0011 18.1 0.0 0.0013 17.9 0.0 1.1 1 0 0 1 1 1 1 Transmembrane protein 55A Lar_restr_allev PF14354.6 BAD85810.1 - 0.0032 17.8 0.9 0.0053 17.1 0.9 1.3 1 0 0 1 1 1 1 Restriction alleviation protein Lar FdhE PF04216.12 BAD85810.1 - 0.0069 16.3 0.1 0.0086 16.0 0.1 1.5 1 1 0 1 1 1 1 Protein involved in formate dehydrogenase formation Elf1 PF05129.13 BAD85810.1 - 0.012 15.7 0.3 0.026 14.5 0.3 1.5 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like Zn-ribbon_8 PF09723.10 BAD85810.1 - 0.015 15.4 0.4 1.3 9.2 0.0 2.5 2 0 0 2 2 2 0 Zinc ribbon domain zf-TFIIB PF13453.6 BAD85810.1 - 0.022 14.1 0.9 0.043 13.2 0.9 1.5 1 0 0 1 1 1 0 Transcription factor zinc-finger Zn_Tnp_IS1595 PF12760.7 BAD85810.1 - 0.028 14.4 0.5 0.048 13.6 0.5 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Prok-RING_1 PF14446.6 BAD85810.1 - 0.1 12.5 0.6 0.72 9.8 0.0 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 zf-ribbon_3 PF13248.6 BAD85810.1 - 0.19 11.1 2.3 0.89 9.1 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF35_N PF12172.8 BAD85810.1 - 0.29 11.0 3.9 5.9 6.9 0.1 2.3 1 1 1 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) CpXC PF14353.6 BAD85810.1 - 0.52 10.4 2.1 1 9.4 0.1 2.3 1 1 1 2 2 2 0 CpXC protein zinc_ribbon_2 PF13240.6 BAD85810.1 - 0.93 9.3 5.1 7.2 6.5 0.1 2.6 3 0 0 3 3 3 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 BAD85810.1 - 1.2 8.7 3.7 5.5 6.6 3.7 2.0 1 1 0 1 1 1 0 TFIIB zinc-binding Carboxyl_trans PF01039.22 BAD85811.1 - 1.2e-203 677.3 0.5 1.4e-203 677.1 0.5 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain MdcE PF06833.11 BAD85811.1 - 1.4e-07 31.2 0.1 3.2e-07 30.1 0.1 1.5 1 0 0 1 1 1 1 Malonate decarboxylase gamma subunit (MdcE) FlgM PF04316.13 BAD85811.1 - 0.17 12.3 0.2 0.41 11.0 0.2 1.6 1 0 0 1 1 1 0 Anti-sigma-28 factor, FlgM OAD_gamma PF04277.13 BAD85812.1 - 5.5e-15 55.7 0.0 6.9e-15 55.4 0.0 1.1 1 0 0 1 1 1 1 Oxaloacetate decarboxylase, gamma chain Sensor PF13796.6 BAD85812.1 - 0.0075 16.3 0.8 0.0098 16.0 0.8 1.2 1 0 0 1 1 1 1 Putative sensor Orf78 PF06024.12 BAD85812.1 - 0.032 14.5 0.2 0.049 13.9 0.2 1.3 1 0 0 1 1 1 0 Orf78 (ac78) Biotin_lipoyl PF00364.22 BAD85813.1 - 1.7e-25 88.7 3.9 3.5e-25 87.6 3.9 1.6 1 0 0 1 1 1 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 BAD85813.1 - 1.7e-16 59.7 0.3 6.6e-07 29.1 0.1 2.4 1 1 1 2 2 2 2 Biotin-lipoyl like HlyD_3 PF13437.6 BAD85813.1 - 4.4e-08 33.8 0.3 0.0014 19.3 0.0 2.7 3 0 0 3 3 3 2 HlyD family secretion protein HlyD_D23 PF16576.5 BAD85813.1 - 3.3e-06 26.5 0.3 0.013 14.7 0.0 2.8 2 1 1 3 3 3 2 Barrel-sandwich domain of CusB or HlyD membrane-fusion PTS_EIIA_1 PF00358.20 BAD85813.1 - 2.1e-05 24.3 0.3 0.064 13.0 0.1 2.6 2 1 1 3 3 3 2 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 RnfC_N PF13375.6 BAD85813.1 - 0.0004 20.3 0.2 0.012 15.5 0.1 2.3 1 1 1 2 2 2 1 RnfC Barrel sandwich hybrid domain NQRA PF05896.11 BAD85813.1 - 0.0012 18.4 0.5 0.046 13.1 0.3 2.2 1 1 1 2 2 2 2 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) GCV_H PF01597.19 BAD85813.1 - 0.0091 15.9 0.2 0.017 15.0 0.2 1.4 1 0 0 1 1 1 1 Glycine cleavage H-protein Peptidase_M23 PF01551.22 BAD85813.1 - 0.026 14.7 2.8 0.82 9.9 0.8 3.6 2 1 0 2 2 2 0 Peptidase family M23 PYNP_C PF07831.13 BAD85813.1 - 0.042 13.5 0.6 3.8 7.2 0.0 2.3 1 1 1 2 2 2 0 Pyrimidine nucleoside phosphorylase C-terminal domain QRPTase_N PF02749.16 BAD85813.1 - 0.076 13.1 0.7 15 5.7 0.0 2.5 2 1 1 3 3 3 0 Quinolinate phosphoribosyl transferase, N-terminal domain YqfD PF06898.11 BAD85813.1 - 0.14 11.0 0.1 0.14 11.0 0.1 2.7 2 1 1 3 3 3 0 Putative stage IV sporulation protein YqfD DUF2118 PF09891.9 BAD85813.1 - 0.36 10.8 2.4 3.1 7.7 0.2 2.3 2 1 1 3 3 3 0 Uncharacterized protein conserved in archaea (DUF2118) MSA-2c PF12238.8 BAD85813.1 - 1.2 9.1 6.2 2.1 8.3 6.2 1.4 1 0 0 1 1 1 0 Merozoite surface antigen 2c DEC-1_N PF04625.13 BAD85813.1 - 3.1 6.7 14.0 4.1 6.3 14.0 1.1 1 0 0 1 1 1 0 DEC-1 protein, N-terminal region OAD_beta PF03977.13 BAD85814.1 - 1e-156 521.3 27.4 1.2e-156 521.1 27.4 1.0 1 0 0 1 1 1 1 Na+-transporting oxaloacetate decarboxylase beta subunit TMEM40 PF15817.5 BAD85814.1 - 0.006 16.3 2.0 0.007 16.1 0.1 2.1 2 1 1 3 3 3 1 Transmembrane protein 40 family CBS PF00571.28 BAD85815.1 - 5.5e-45 151.6 14.9 2.8e-12 46.9 1.0 4.2 4 0 0 4 4 4 4 CBS domain PRC PF05239.16 BAD85815.1 - 0.0012 18.9 6.0 0.2 11.7 0.0 3.6 3 1 0 3 3 3 1 PRC-barrel domain IF3_N PF05198.16 BAD85815.1 - 0.0031 17.7 3.0 1.6 9.0 0.1 3.6 2 1 1 3 3 3 1 Translation initiation factor IF-3, N-terminal domain sCache_3_2 PF17203.4 BAD85815.1 - 0.012 15.7 1.5 17 5.6 0.0 3.8 4 0 0 4 4 4 0 Single cache domain 3 DUF2171 PF09939.9 BAD85815.1 - 0.71 10.2 6.5 16 5.8 0.5 3.7 3 1 1 4 4 4 0 Uncharacterized protein conserved in bacteria (DUF2171) DUF3659 PF12396.8 BAD85815.1 - 2.9 7.9 6.8 13 5.8 0.1 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF3659) Homoserine_dh PF00742.19 BAD85816.1 - 5.3e-51 173.0 0.1 6.9e-51 172.6 0.1 1.2 1 0 0 1 1 1 1 Homoserine dehydrogenase NAD_binding_3 PF03447.16 BAD85816.1 - 8.3e-07 29.7 0.0 2.3e-06 28.2 0.0 1.8 1 1 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.21 BAD85816.1 - 4.1e-05 23.4 0.0 8.3e-05 22.4 0.0 1.5 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RDD PF06271.12 BAD85817.1 - 0.19 11.9 2.9 0.27 11.4 2.9 1.2 1 0 0 1 1 1 0 RDD family ASCH PF04266.14 BAD85818.1 - 1.9e-07 31.7 0.0 2.7e-07 31.1 0.0 1.4 1 1 0 1 1 1 1 ASCH domain DUF3850 PF12961.7 BAD85818.1 - 0.048 13.7 0.0 0.088 12.9 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3850) zf-ZPR1 PF03367.13 BAD85819.1 - 1.6e-38 132.1 0.0 2e-38 131.7 0.0 1.1 1 0 0 1 1 1 1 ZPR1 zinc-finger domain Lar_restr_allev PF14354.6 BAD85819.1 - 1.6e-05 25.2 0.1 3.4e-05 24.1 0.1 1.5 1 0 0 1 1 1 1 Restriction alleviation protein Lar Prim_Zn_Ribbon PF08273.12 BAD85819.1 - 0.025 14.8 2.7 0.16 12.3 2.7 2.1 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase DnaJ_CXXCXGXG PF00684.19 BAD85819.1 - 0.063 13.6 0.1 0.12 12.8 0.1 1.4 1 0 0 1 1 1 0 DnaJ central domain Cobl PF09469.10 BAD85819.1 - 0.12 12.6 0.0 0.22 11.8 0.0 1.4 1 0 0 1 1 1 0 Cordon-bleu ubiquitin-like domain SepF PF04472.12 BAD85820.1 - 3.6e-16 59.2 0.1 5.1e-16 58.7 0.1 1.2 1 0 0 1 1 1 1 Cell division protein SepF PucR PF07905.11 BAD85820.1 - 0.0097 16.2 0.1 0.014 15.7 0.1 1.3 1 1 0 1 1 1 1 Purine catabolism regulatory protein-like family FecCD PF01032.18 BAD85821.1 - 0.14 11.1 5.8 0.17 10.9 5.8 1.1 1 0 0 1 1 1 0 FecCD transport family Tetraspanin PF00335.20 BAD85821.1 - 1.3 8.7 6.8 4.9 6.8 6.8 1.8 1 1 0 1 1 1 0 Tetraspanin family DUF1180 PF06679.12 BAD85821.1 - 1.6 9.2 3.0 0.61 10.5 0.2 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1180) DUF2637 PF10935.8 BAD85821.1 - 2.5 8.0 7.1 3 7.7 0.4 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2637) Phage_holin_3_6 PF07332.11 BAD85821.1 - 4.3 7.4 14.1 18 5.4 14.1 1.8 1 1 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III RNase_PH PF01138.21 BAD85822.1 - 2.6e-27 95.9 0.0 3.9e-27 95.3 0.0 1.3 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 BAD85822.1 - 4.9e-15 55.3 0.4 1.4e-14 53.9 0.0 1.9 2 0 0 2 2 2 1 3' exoribonuclease family, domain 2 RNase_PH PF01138.21 BAD85823.1 - 4.9e-36 124.1 0.0 7.4e-36 123.6 0.0 1.3 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 BAD85823.1 - 7.3e-17 61.2 0.2 1.3e-16 60.4 0.2 1.4 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 KH_6 PF15985.5 BAD85824.1 - 8.3e-10 38.9 0.4 1.9e-09 37.7 0.4 1.6 1 0 0 1 1 1 1 KH domain KH_2 PF07650.17 BAD85824.1 - 2.5e-07 30.4 0.7 9e-07 28.6 0.1 2.1 2 0 0 2 2 2 1 KH domain KH_1 PF00013.29 BAD85824.1 - 1e-06 28.5 0.8 1.9e-06 27.6 0.2 1.9 2 0 0 2 2 2 1 KH domain ECR1_N PF14382.6 BAD85824.1 - 4.5e-06 26.4 0.8 7.7e-06 25.6 0.1 1.8 2 0 0 2 2 2 1 Exosome complex exonuclease RRP4 N-terminal region KH_4 PF13083.6 BAD85824.1 - 0.016 15.1 0.1 0.049 13.5 0.1 1.7 1 0 0 1 1 1 0 KH domain SBDS PF01172.18 BAD85825.1 - 4.2e-26 90.9 0.0 8.3e-26 89.9 0.0 1.5 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.10 BAD85825.1 - 2.6e-16 59.7 0.0 4.3e-16 59.0 0.0 1.3 1 0 0 1 1 1 1 SBDS protein C-terminal domain EFG_C PF00679.24 BAD85825.1 - 0.042 13.9 0.0 0.096 12.7 0.0 1.6 1 0 0 1 1 1 0 Elongation factor G C-terminus HpaB PF03241.13 BAD85825.1 - 0.088 11.9 0.0 0.12 11.4 0.0 1.2 1 0 0 1 1 1 0 4-hydroxyphenylacetate 3-hydroxylase C terminal Proteasome PF00227.26 BAD85826.1 - 1.6e-65 220.2 0.2 9.1e-65 217.7 0.0 1.9 1 1 1 2 2 2 1 Proteasome subunit Proteasome_A_N PF10584.9 BAD85826.1 - 2.7e-12 46.1 0.1 4.3e-12 45.5 0.1 1.3 1 0 0 1 1 1 1 Proteasome subunit A N-terminal signature DctP PF03480.13 BAD85826.1 - 0.039 13.3 0.5 0.057 12.8 0.5 1.2 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein, family 7 Phage_holin_3_6 PF07332.11 BAD85827.1 - 0.012 15.6 4.8 0.013 15.5 4.8 1.1 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III E1-E2_ATPase PF00122.20 BAD85827.1 - 0.084 12.4 0.8 0.094 12.2 0.8 1.0 1 0 0 1 1 1 0 E1-E2 ATPase DUF2207 PF09972.9 BAD85827.1 - 0.54 9.0 2.7 0.54 9.0 2.7 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Gram_pos_anchor PF00746.21 BAD85827.1 - 1.5 8.9 6.1 0.54 10.2 1.9 2.0 2 0 0 2 2 2 0 LPXTG cell wall anchor motif HIT PF01230.23 BAD85828.1 - 7e-24 84.4 0.0 9.8e-24 83.9 0.0 1.1 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 BAD85828.1 - 6e-14 52.5 0.0 8.8e-14 52.0 0.0 1.2 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.15 BAD85828.1 - 0.002 18.0 0.0 0.0031 17.4 0.0 1.4 1 0 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 MazG-like PF12643.7 BAD85829.1 - 2.2e-21 75.9 0.1 2.8e-21 75.6 0.1 1.1 1 0 0 1 1 1 1 MazG-like family MazG PF03819.17 BAD85829.1 - 8.7e-07 29.0 1.7 1.5e-06 28.3 1.7 1.5 1 1 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain PRA-PH PF01503.17 BAD85829.1 - 6.3e-05 23.3 0.8 7.8e-05 23.0 0.8 1.4 1 1 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase Flp_N PF03930.14 BAD85830.1 - 0.021 14.8 0.2 0.7 9.9 0.0 2.1 1 1 1 2 2 2 0 Recombinase Flp protein N-terminus TerC PF03741.16 BAD85831.1 - 0.0015 18.3 1.6 0.0015 18.2 1.6 1.0 1 0 0 1 1 1 1 Integral membrane protein TerC family DUF2207 PF09972.9 BAD85831.1 - 0.064 12.0 5.7 0.07 11.9 5.7 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Claudin_2 PF13903.6 BAD85831.1 - 0.069 12.9 0.8 0.071 12.9 0.8 1.1 1 0 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction Phage_holin_3_6 PF07332.11 BAD85831.1 - 0.5 10.4 3.5 0.6 10.2 3.5 1.1 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III ABC2_membrane_3 PF12698.7 BAD85831.1 - 0.6 9.2 7.1 0.69 9.0 7.1 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF4191 PF13829.6 BAD85831.1 - 0.73 9.1 3.1 0.81 9.0 3.1 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) S_4TM PF18159.1 BAD85831.1 - 1.1 8.6 2.6 1.2 8.3 2.6 1.0 1 0 0 1 1 1 0 SMODS-associating 4TM effector domain DUF2892 PF11127.8 BAD85831.1 - 1.4 9.0 5.7 2 8.5 5.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2892) TPP_enzyme_C PF02775.21 BAD85832.1 - 5.2e-32 110.7 0.1 8.9e-32 110.0 0.1 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 BAD85832.1 - 1.4e-14 54.4 0.0 2.5e-14 53.6 0.0 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4 PF00037.27 BAD85832.1 - 2e-10 40.0 10.9 8.4e-07 28.6 2.1 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 BAD85832.1 - 1.3e-07 31.4 9.5 0.00051 20.0 1.7 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 BAD85832.1 - 3.6e-06 27.0 8.7 7.8e-06 26.0 8.7 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 BAD85832.1 - 6.2e-06 26.7 9.9 3.2e-05 24.4 10.2 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 BAD85832.1 - 3.1e-05 23.8 18.0 0.0021 18.0 1.7 2.8 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 BAD85832.1 - 3.3e-05 23.9 11.4 0.00033 20.7 10.7 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 BAD85832.1 - 3.5e-05 23.8 10.5 0.001 19.1 11.6 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 BAD85832.1 - 0.0099 16.3 10.1 0.72 10.5 1.8 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 BAD85832.1 - 0.013 16.5 7.9 0.021 15.7 1.2 2.7 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Transket_pyr PF02779.24 BAD85832.1 - 0.028 14.1 0.0 3.6 7.2 0.0 2.6 2 1 0 2 2 2 0 Transketolase, pyrimidine binding domain PFOR_II PF17147.4 BAD85832.1 - 0.051 13.9 0.0 0.11 12.8 0.0 1.6 1 0 0 1 1 1 0 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 BAD85832.1 - 0.061 13.2 0.0 0.88 9.5 0.0 2.4 2 0 0 2 2 2 0 Transketolase, C-terminal domain DXP_synthase_N PF13292.6 BAD85832.1 - 0.17 11.1 0.5 3.2 6.9 0.0 2.3 1 1 0 2 2 2 0 1-deoxy-D-xylulose-5-phosphate synthase Fer4_15 PF13459.6 BAD85832.1 - 0.2 12.4 8.9 0.6 10.9 1.4 2.9 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_3 PF12798.7 BAD85832.1 - 2.5 9.2 14.5 0.8 10.8 5.2 2.8 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.6 BAD85832.1 - 4.2 8.0 12.2 4.4 7.9 2.8 2.7 1 1 1 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I PIN PF01850.21 BAD85833.1 - 6.6e-26 91.2 0.5 2e-25 89.7 0.5 1.6 1 1 0 1 1 1 1 PIN domain PIN_12 PF16289.5 BAD85833.1 - 0.00076 20.0 0.3 0.0015 19.1 0.3 1.7 1 1 0 1 1 1 1 PIN domain DUF4547 PF15080.6 BAD85833.1 - 0.085 12.5 0.1 0.12 12.0 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4547) DUF4152 PF13680.6 BAD85835.1 - 6.2e-144 477.1 1.4 7e-144 476.9 1.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF4152) TPR_11 PF13414.6 BAD85837.1 - 0.013 15.2 1.6 0.045 13.4 0.1 2.3 3 0 0 3 3 3 0 TPR repeat BTAD PF03704.17 BAD85837.1 - 0.046 14.2 0.0 7.3 7.0 0.0 2.1 2 0 0 2 2 2 0 Bacterial transcriptional activator domain AI-2E_transport PF01594.16 BAD85838.1 - 9e-37 126.9 26.0 1.1e-36 126.6 26.0 1.1 1 0 0 1 1 1 1 AI-2E family transporter TMEM237 PF15383.6 BAD85838.1 - 0.15 11.2 0.9 0.22 10.6 0.2 1.7 1 1 1 2 2 2 0 Transmembrane protein 237 UPF0114 PF03350.16 BAD85838.1 - 0.62 10.3 8.8 6.3 7.0 0.1 2.8 1 1 1 2 2 2 0 Uncharacterized protein family, UPF0114 UPF0182 PF03699.13 BAD85838.1 - 5.3 5.0 7.6 2.9 5.9 5.5 1.3 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0182) Isochorismatase PF00857.20 BAD85839.1 - 1.2e-45 155.9 0.0 1.3e-45 155.7 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family DUF2240 PF09999.9 BAD85840.1 - 9.7e-07 28.5 0.0 2.3e-05 24.1 0.0 2.0 1 1 1 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2240) HemN_C PF06969.16 BAD85840.1 - 0.022 14.8 0.1 0.25 11.5 0.0 2.3 2 0 0 2 2 2 0 HemN C-terminal domain DUF2067 PF09840.9 BAD85840.1 - 0.032 13.8 1.2 0.055 13.0 1.2 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2067) 4HBT PF03061.22 BAD85841.1 - 6.5e-08 32.8 0.3 3.3e-07 30.6 0.1 2.1 2 0 0 2 2 2 1 Thioesterase superfamily MaoC_dehydratas PF01575.19 BAD85841.1 - 0.0007 19.2 0.0 0.001 18.7 0.0 1.3 1 0 0 1 1 1 1 MaoC like domain 4HBT_3 PF13622.6 BAD85841.1 - 0.034 14.4 0.0 0.056 13.7 0.0 1.3 1 0 0 1 1 1 0 Thioesterase-like superfamily DUF334 PF03904.13 BAD85842.1 - 3.4 7.2 4.9 0.55 9.7 0.6 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF334) PadR PF03551.14 BAD85843.1 - 1.7e-16 59.9 0.3 2.1e-16 59.6 0.3 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family RTP PF02334.16 BAD85843.1 - 3.4e-06 27.7 0.0 3.8e-06 27.5 0.0 1.1 1 0 0 1 1 1 1 Replication terminator protein HTH_34 PF13601.6 BAD85843.1 - 0.00015 21.9 0.0 0.00018 21.6 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF505 PF04458.12 BAD85843.1 - 0.008 14.6 0.1 0.013 13.9 0.1 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF505) FUR PF01475.19 BAD85843.1 - 0.021 14.9 0.0 0.023 14.9 0.0 1.2 1 0 0 1 1 1 0 Ferric uptake regulator family HTH_27 PF13463.6 BAD85843.1 - 0.031 14.8 0.3 0.072 13.6 0.0 1.9 2 1 0 2 2 2 0 Winged helix DNA-binding domain Rrf2 PF02082.20 BAD85843.1 - 0.043 14.2 0.0 0.061 13.7 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator Sulfolobus_pRN PF05584.11 BAD85843.1 - 0.063 13.3 0.9 0.16 12.0 0.1 1.9 1 1 1 2 2 2 0 Sulfolobus plasmid regulatory protein Penicillinase_R PF03965.16 BAD85843.1 - 0.065 13.6 0.0 0.076 13.4 0.0 1.1 1 0 0 1 1 1 0 Penicillinase repressor HTH_IclR PF09339.10 BAD85843.1 - 0.15 11.8 0.3 0.5 10.2 0.1 2.0 2 1 1 3 3 3 0 IclR helix-turn-helix domain OprB PF04966.12 BAD85843.1 - 0.28 10.6 0.0 0.34 10.3 0.0 1.0 1 0 0 1 1 1 0 Carbohydrate-selective porin, OprB family MFS_1 PF07690.16 BAD85844.1 - 3.8e-42 144.5 22.9 7.5e-26 90.9 5.5 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 BAD85844.1 - 9.1e-08 31.4 12.6 1.3e-06 27.5 12.6 2.0 1 1 0 1 1 1 1 MFS_1 like family PUCC PF03209.15 BAD85844.1 - 0.001 18.2 13.2 0.074 12.0 3.3 3.8 3 1 1 4 4 4 2 PUCC protein Asparaginase PF00710.20 BAD85845.1 - 2.2e-59 200.2 0.0 3.6e-59 199.5 0.0 1.3 1 0 0 1 1 1 1 Asparaginase, N-terminal Asparaginase_C PF17763.1 BAD85845.1 - 2e-31 108.6 0.1 4.2e-31 107.5 0.0 1.5 2 0 0 2 2 2 1 Glutaminase/Asparaginase C-terminal domain DUF1241 PF06840.11 BAD85845.1 - 0.082 12.5 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1241) Arm-DNA-bind_3 PF13356.6 BAD85846.1 - 0.017 15.5 0.2 0.022 15.1 0.2 1.3 1 0 0 1 1 1 0 Arm DNA-binding domain DUF4288 PF14119.6 BAD85846.1 - 0.063 13.7 1.1 0.19 12.2 1.0 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4288) DUF4242 PF14026.6 BAD85846.1 - 0.07 13.3 0.0 0.09 13.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4242) DUF1381 PF07129.11 BAD85846.1 - 0.19 11.6 0.3 0.29 11.0 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1381) DUF4854 PF16146.5 BAD85847.1 - 0.039 14.3 0.1 0.12 12.7 0.1 1.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4854) MarC PF01914.17 BAD85848.1 - 1.4e-59 201.0 13.1 1.6e-59 200.7 13.1 1.0 1 0 0 1 1 1 1 MarC family integral membrane protein ATPase_gene1 PF09527.10 BAD85848.1 - 0.045 13.9 2.3 0.045 13.9 2.3 2.8 3 0 0 3 3 3 0 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter DUF4293 PF14126.6 BAD85848.1 - 0.21 11.8 8.3 0.49 10.6 8.2 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4293) DUF3754 PF12576.8 BAD85848.1 - 0.32 11.0 4.0 1.9 8.5 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3754) Choline_transpo PF04515.12 BAD85848.1 - 0.92 8.6 10.7 0.66 9.1 3.2 2.2 2 0 0 2 2 2 0 Plasma-membrane choline transporter DUF2101 PF09874.9 BAD85850.1 - 3.8e-96 320.7 13.1 4.4e-96 320.5 13.1 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2101) DUF2070 PF09843.9 BAD85850.1 - 1.8 6.7 11.3 2.6 6.2 11.3 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) RPN7 PF10602.9 BAD85851.1 - 0.15 11.7 0.0 0.24 11.1 0.0 1.3 1 0 0 1 1 1 0 26S proteasome subunit RPN7 Bactofilin PF04519.13 BAD85853.1 - 1.6e-09 37.9 1.5 0.0022 18.2 0.1 3.2 2 1 1 3 3 3 2 Polymer-forming cytoskeletal DCP1 PF06058.13 BAD85853.1 - 0.15 12.0 0.4 0.37 10.7 0.4 1.6 1 0 0 1 1 1 0 Dcp1-like decapping family Class_IIIsignal PF04021.12 BAD85854.1 - 0.0084 16.1 2.6 0.043 13.8 2.6 2.1 1 1 0 1 1 1 1 Class III signal peptide NADHdh PF00146.21 BAD85854.1 - 0.031 13.6 1.9 0.042 13.2 1.9 1.1 1 0 0 1 1 1 0 NADH dehydrogenase Class_IIIsignal PF04021.12 BAD85856.1 - 6.9e-08 32.2 0.5 1.3e-07 31.4 0.5 1.5 1 0 0 1 1 1 1 Class III signal peptide Stk19 PF10494.9 BAD85857.1 - 0.12 12.1 0.0 0.12 12.0 0.0 1.1 1 0 0 1 1 1 0 Serine-threonine protein kinase 19 Tubulin PF00091.25 BAD85858.1 - 1.1e-27 97.6 0.1 1.2e-25 90.9 0.1 2.2 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain 2-Hacid_dh_C PF02826.19 BAD85858.1 - 0.18 11.2 0.0 0.34 10.2 0.0 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Prenyltrans PF00432.21 BAD85859.1 - 4.4e-13 48.7 2.0 0.00026 20.7 0.0 4.8 5 0 0 5 5 5 2 Prenyltransferase and squalene oxidase repeat SQHop_cyclase_C PF13243.6 BAD85859.1 - 8.6e-13 48.1 0.5 0.00017 20.8 0.1 4.8 3 2 1 4 4 4 4 Squalene-hopene cyclase C-terminal domain SQHop_cyclase_N PF13249.6 BAD85859.1 - 9.7e-08 31.4 0.0 0.57 9.2 0.0 4.5 4 2 1 5 5 5 3 Squalene-hopene cyclase N-terminal domain EF-hand_5 PF13202.6 BAD85859.1 - 0.045 13.3 0.0 0.11 12.0 0.0 1.6 1 0 0 1 1 1 0 EF hand Pec_lyase PF09492.10 BAD85859.1 - 0.051 12.9 0.1 0.19 11.0 0.0 1.9 2 0 0 2 2 2 0 Pectic acid lyase EF-hand_1 PF00036.32 BAD85859.1 - 0.056 13.0 0.0 0.13 11.8 0.0 1.6 1 0 0 1 1 1 0 EF hand Radical_SAM PF04055.21 BAD85860.1 - 3.1e-26 92.8 0.0 9.1e-26 91.2 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily Wyosine_form PF08608.12 BAD85860.1 - 7.2e-23 80.7 0.0 1.4e-22 79.8 0.0 1.5 1 0 0 1 1 1 1 Wyosine base formation Fer4_12 PF13353.6 BAD85860.1 - 0.00011 22.5 0.5 0.025 14.8 0.4 2.6 2 1 0 2 2 2 2 4Fe-4S single cluster domain MTS PF05175.14 BAD85862.1 - 1.5e-17 63.6 0.0 1e-16 61.0 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.6 BAD85862.1 - 2.1e-16 60.0 0.0 2.9e-16 59.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 BAD85862.1 - 4.1e-11 43.4 0.0 3.3e-10 40.5 0.0 2.2 1 1 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 BAD85862.1 - 6.6e-11 42.1 0.2 1.5e-10 41.0 0.1 1.5 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_11 PF08241.12 BAD85862.1 - 1.2e-08 35.5 0.0 4.9e-08 33.5 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 BAD85862.1 - 3.8e-06 26.8 0.0 1.2e-05 25.3 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.16 BAD85862.1 - 3.8e-06 26.8 0.0 5.5e-06 26.3 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_18 PF12847.7 BAD85862.1 - 0.00013 21.9 0.0 0.00022 21.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 BAD85862.1 - 0.00018 20.9 0.0 0.00084 18.7 0.0 1.8 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family PCMT PF01135.19 BAD85862.1 - 0.00068 19.4 0.0 0.00098 18.9 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_12 PF08242.12 BAD85862.1 - 0.00084 20.0 0.0 0.0028 18.4 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.18 BAD85862.1 - 0.024 14.3 0.0 0.039 13.6 0.0 1.3 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 tRNA_U5-meth_tr PF05958.11 BAD85862.1 - 0.044 12.8 0.1 0.06 12.3 0.1 1.1 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase CMAS PF02353.20 BAD85862.1 - 0.048 12.9 0.0 0.13 11.6 0.0 1.6 1 1 0 1 1 1 0 Mycolic acid cyclopropane synthetase TRM PF02005.16 BAD85862.1 - 0.051 12.7 0.0 0.073 12.2 0.0 1.2 1 0 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase rRNA_methylase PF06962.12 BAD85862.1 - 0.06 13.3 0.0 0.59 10.1 0.0 2.1 1 1 1 2 2 2 0 Putative rRNA methylase Methyltransf_15 PF09445.10 BAD85862.1 - 0.092 12.3 0.0 0.096 12.3 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_24 PF13578.6 BAD85862.1 - 0.11 13.5 0.0 0.18 12.8 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain N6_Mtase PF02384.16 BAD85862.1 - 0.2 10.9 0.0 0.34 10.1 0.0 1.3 1 0 0 1 1 1 0 N-6 DNA Methylase DUF2431 PF10354.9 BAD85862.1 - 0.23 11.7 0.0 0.3 11.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF2431) Flavin_Reduct PF01613.18 BAD85863.1 - 8.3e-24 84.4 0.0 9.4e-24 84.2 0.0 1.0 1 0 0 1 1 1 1 Flavin reductase like domain Peptidase_S8 PF00082.22 BAD85864.1 - 8.6e-48 163.1 3.9 1.2e-47 162.7 3.9 1.1 1 0 0 1 1 1 1 Subtilase family QRPTase_C PF01729.19 BAD85865.1 - 5.2e-28 97.9 0.0 7.2e-28 97.5 0.0 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain NAPRTase_C PF17956.1 BAD85865.1 - 1.7e-07 31.7 0.1 4.9e-07 30.2 0.0 1.7 1 1 0 1 1 1 1 Nicotinate phosphoribosyltransferase C-terminal domain QRPTase_N PF02749.16 BAD85865.1 - 1.1e-05 25.4 0.0 2.3e-05 24.4 0.0 1.5 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain NAPRTase_N PF17767.1 BAD85865.1 - 0.00036 20.9 0.0 0.039 14.3 0.0 2.3 1 1 1 2 2 2 1 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain Zn-ribbon_8 PF09723.10 BAD85865.1 - 0.006 16.7 0.6 0.038 14.1 0.3 2.2 2 0 0 2 2 2 1 Zinc ribbon domain NIR_SIR_ferr PF03460.17 BAD85865.1 - 0.0084 15.9 0.0 0.021 14.7 0.0 1.6 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain DNA_ligase_ZBD PF03119.16 BAD85865.1 - 0.16 12.0 2.3 0.59 10.2 1.0 2.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain adh_short_C2 PF13561.6 BAD85866.1 - 6.1e-56 189.6 0.0 7.9e-56 189.2 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 BAD85866.1 - 2.6e-42 144.5 0.1 3.4e-42 144.1 0.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 BAD85866.1 - 1.3e-06 28.5 0.0 2e-06 27.8 0.0 1.4 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 BAD85866.1 - 0.001 18.6 0.1 0.005 16.3 0.1 1.9 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Ldh_1_N PF00056.23 BAD85866.1 - 0.033 14.3 0.3 0.065 13.3 0.1 1.6 2 0 0 2 2 2 0 lactate/malate dehydrogenase, NAD binding domain PGF-CTERM PF18204.1 BAD85867.1 - 1.3 9.0 5.3 3.6 7.7 5.3 1.8 1 0 0 1 1 1 0 PGF-CTERM motif Lactamase_B_3 PF13483.6 BAD85870.1 - 6.3e-08 32.7 0.0 1.1e-07 31.9 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 BAD85870.1 - 1.5e-07 31.1 0.0 2e-07 30.7 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 BAD85870.1 - 0.00032 20.8 0.1 0.0012 18.9 0.0 1.9 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily DUF592 PF04574.13 BAD85871.1 - 0.12 12.2 0.2 0.71 9.6 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF592) RELT PF12606.8 BAD85871.1 - 0.26 10.3 1.3 0.45 9.6 1.3 1.3 1 0 0 1 1 1 0 Tumour necrosis factor receptor superfamily member 19 Pyr_redox_2 PF07992.14 BAD85873.1 - 2.6e-41 141.8 2.3 4.4e-41 141.0 2.3 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_20 PF14691.6 BAD85873.1 - 7e-39 132.1 0.1 1.2e-38 131.4 0.1 1.4 1 0 0 1 1 1 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Pyr_redox PF00070.27 BAD85873.1 - 2.1e-16 60.3 4.8 6.4e-08 33.1 0.1 3.7 3 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 BAD85873.1 - 4.8e-15 55.6 2.7 4.7e-10 39.2 0.0 3.1 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 BAD85873.1 - 2.2e-09 37.4 1.0 2e-08 34.3 0.0 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.21 BAD85873.1 - 1.6e-08 34.1 1.4 0.0026 17.1 0.5 2.4 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain GIDA PF01134.22 BAD85873.1 - 2e-07 30.5 0.8 5.9e-05 22.3 0.1 2.6 2 0 0 2 2 2 2 Glucose inhibited division protein A Thi4 PF01946.17 BAD85873.1 - 3.3e-06 26.5 0.1 3.3e-06 26.5 0.1 2.2 3 0 0 3 3 3 1 Thi4 family HI0933_like PF03486.14 BAD85873.1 - 3.8e-06 25.9 6.2 1.9e-05 23.5 1.1 2.6 3 0 0 3 3 3 1 HI0933-like protein FAD_oxidored PF12831.7 BAD85873.1 - 6.1e-06 25.9 3.6 0.0001 21.8 0.1 2.4 3 0 0 3 3 3 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 BAD85873.1 - 2.9e-05 23.5 1.4 3.9e-05 23.1 0.3 1.6 2 0 0 2 2 2 1 FAD binding domain NAD_binding_7 PF13241.6 BAD85873.1 - 8.4e-05 23.0 0.6 0.15 12.5 0.1 2.7 2 1 0 2 2 2 2 Putative NAD(P)-binding FAD_binding_2 PF00890.24 BAD85873.1 - 0.0001 21.5 1.5 0.0001 21.5 1.5 3.1 2 1 2 4 4 4 1 FAD binding domain DAO PF01266.24 BAD85873.1 - 0.0002 21.1 8.3 0.0031 17.1 1.0 3.4 2 1 0 4 4 4 1 FAD dependent oxidoreductase Amino_oxidase PF01593.24 BAD85873.1 - 0.00029 20.3 1.0 0.0065 15.8 0.1 2.9 2 1 1 3 3 3 1 Flavin containing amine oxidoreductase Shikimate_DH PF01488.20 BAD85873.1 - 0.00032 20.8 0.7 5.3 7.1 0.0 3.6 3 0 0 3 3 3 1 Shikimate / quinate 5-dehydrogenase 2-Hacid_dh_C PF02826.19 BAD85873.1 - 0.003 17.0 0.1 2.3 7.6 0.0 2.8 3 0 0 3 3 3 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PALP PF00291.25 BAD85873.1 - 0.0035 16.8 0.0 1.7 7.9 0.0 2.3 2 0 0 2 2 2 2 Pyridoxal-phosphate dependent enzyme FMO-like PF00743.19 BAD85873.1 - 0.0036 15.8 0.0 0.047 12.1 0.0 2.0 2 0 0 2 2 2 1 Flavin-binding monooxygenase-like Lycopene_cycl PF05834.12 BAD85873.1 - 0.0094 15.0 0.3 0.02 14.0 0.3 1.5 1 0 0 1 1 1 1 Lycopene cyclase protein 3HCDH_N PF02737.18 BAD85873.1 - 0.0097 15.8 0.4 0.23 11.4 0.1 2.3 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.17 BAD85873.1 - 0.016 15.8 3.2 0.56 10.8 0.3 3.5 3 1 0 3 3 2 0 NADP oxidoreductase coenzyme F420-dependent NAD_binding_9 PF13454.6 BAD85873.1 - 0.02 14.9 2.4 0.086 12.8 0.2 2.6 3 0 0 3 3 3 0 FAD-NAD(P)-binding XdhC_C PF13478.6 BAD85873.1 - 0.029 14.9 0.8 2.7 8.5 0.0 2.6 3 0 0 3 3 2 0 XdhC Rossmann domain Fer4_10 PF13237.6 BAD85873.1 - 0.72 10.0 4.3 2 8.6 4.3 1.8 1 1 0 1 1 1 0 4Fe-4S dicluster domain DHODB_Fe-S_bind PF10418.9 BAD85874.1 - 2.2e-12 46.6 1.4 3.9e-12 45.8 1.4 1.4 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B FAD_binding_6 PF00970.24 BAD85874.1 - 0.03 14.7 0.0 0.064 13.6 0.0 1.5 1 0 0 1 1 1 0 Oxidoreductase FAD-binding domain Fer2_3 PF13085.6 BAD85874.1 - 0.031 14.3 0.9 0.17 11.9 0.1 2.4 3 0 0 3 3 3 0 2Fe-2S iron-sulfur cluster binding domain Peripla_BP_6 PF13458.6 BAD85874.1 - 0.035 13.8 0.0 0.068 12.8 0.0 1.4 2 0 0 2 2 2 0 Periplasmic binding protein PPS_PS PF02006.16 BAD85875.1 - 2.3e-75 252.0 0.3 2.8e-75 251.7 0.3 1.1 1 0 0 1 1 1 1 Phosphopantothenate/pantothenate synthetase PALP PF00291.25 BAD85876.1 - 1.4e-48 165.8 0.1 5.8e-48 163.8 0.1 1.7 1 1 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme DUF2605 PF10792.9 BAD85876.1 - 0.15 12.0 0.0 0.32 11.0 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2605) Glucosamine_iso PF01182.20 BAD85876.1 - 0.15 11.9 0.0 0.23 11.3 0.0 1.3 1 0 0 1 1 1 0 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase HTH_19 PF12844.7 BAD85877.1 - 2.8e-09 36.9 0.1 1.8e-08 34.3 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_3 PF01381.22 BAD85877.1 - 3e-09 36.8 0.0 6.7e-09 35.7 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 BAD85877.1 - 7.2e-08 32.7 0.0 1.7e-07 31.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MqsA_antitoxin PF15731.5 BAD85877.1 - 0.019 15.1 0.0 0.11 12.6 0.0 2.2 2 1 0 2 2 2 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA Phage_CI_repr PF07022.13 BAD85877.1 - 0.03 14.4 0.0 0.043 13.9 0.0 1.4 1 1 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain YdaS_antitoxin PF15943.5 BAD85877.1 - 0.12 12.2 0.0 0.62 10.0 0.0 2.1 2 0 0 2 2 2 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_Crp_2 PF13545.6 BAD85877.1 - 0.13 12.3 0.0 0.27 11.2 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Peptidase_S8 PF00082.22 BAD85878.1 - 4.4e-66 223.2 12.9 7.7e-66 222.4 12.9 1.4 1 0 0 1 1 1 1 Subtilase family Tk-SP_N-pro PF18237.1 BAD85878.1 - 1.1e-36 124.6 0.6 2e-36 123.9 0.6 1.4 1 0 0 1 1 1 1 Tk-SP N-propeptide domain PPC PF04151.15 BAD85878.1 - 1.5e-13 51.6 25.9 8.1e-10 39.7 2.8 3.6 3 1 0 3 3 3 2 Bacterial pre-peptidase C-terminal domain SQHop_cyclase_C PF13243.6 BAD85879.1 - 2.1e-05 23.8 3.2 0.37 9.8 0.3 4.1 2 2 2 4 4 4 3 Squalene-hopene cyclase C-terminal domain SQHop_cyclase_N PF13249.6 BAD85879.1 - 0.013 14.6 2.7 5.6 6.0 0.1 3.8 4 1 2 6 6 6 0 Squalene-hopene cyclase N-terminal domain TED_complement PF07678.14 BAD85879.1 - 0.017 14.1 3.6 2.2 7.2 0.0 4.1 3 2 2 5 5 5 0 A-macroglobulin TED domain DUF43 PF01861.16 BAD85880.1 - 2.3e-120 400.3 0.1 2.9e-120 400.0 0.1 1.1 1 0 0 1 1 1 1 Branched-chain polyamine synthase A C-terminal domain N6-adenineMlase PF10237.9 BAD85880.1 - 0.003 17.4 0.0 0.0043 16.9 0.0 1.3 1 0 0 1 1 1 1 Probable N6-adenine methyltransferase DUF1217 PF06748.12 BAD85880.1 - 0.0038 17.3 0.0 0.0062 16.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1217) zf-FPG_IleRS PF06827.14 BAD85880.1 - 0.15 12.0 0.1 0.4 10.6 0.1 1.7 1 0 0 1 1 1 0 Zinc finger found in FPG and IleRS tRNA_Me_trans PF03054.16 BAD85881.1 - 0.03 13.1 0.0 0.04 12.7 0.0 1.1 1 0 0 1 1 1 0 tRNA methyl transferase QueC PF06508.13 BAD85881.1 - 0.093 12.2 0.0 0.23 10.9 0.0 1.7 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.20 BAD85881.1 - 0.11 12.2 0.2 0.23 11.2 0.0 1.6 2 0 0 2 2 2 0 PP-loop family FeS_assembly_P PF01883.19 BAD85882.1 - 2.7e-25 88.3 1.9 4e-21 75.0 0.1 2.3 2 0 0 2 2 2 2 Iron-sulfur cluster assembly protein HMA PF00403.26 BAD85882.1 - 0.12 12.8 9.6 3 8.3 0.0 3.6 2 1 1 3 3 3 0 Heavy-metal-associated domain Fer4_13 PF13370.6 BAD85883.1 - 6e-17 61.9 4.7 7.5e-17 61.6 4.7 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 BAD85883.1 - 2.6e-14 53.7 8.7 4.9e-14 52.8 8.7 1.4 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_19 PF06902.11 BAD85883.1 - 2.9e-07 30.5 0.7 3.2e-07 30.3 0.7 1.0 1 0 0 1 1 1 1 Divergent 4Fe-4S mono-cluster Fer4 PF00037.27 BAD85883.1 - 1e-05 25.1 7.0 0.0067 16.2 1.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 BAD85883.1 - 0.0052 16.9 4.7 0.032 14.4 4.8 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 BAD85883.1 - 0.015 15.8 3.1 0.86 10.3 0.4 2.2 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_10 PF13237.6 BAD85883.1 - 0.018 15.2 3.2 0.05 13.7 3.2 1.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 BAD85883.1 - 0.048 13.8 7.2 0.13 12.4 0.9 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Ribosomal_S27 PF01599.19 BAD85884.1 - 2.8e-22 78.6 2.8 3.5e-22 78.3 2.8 1.1 1 0 0 1 1 1 1 Ribosomal protein S27a GFA PF04828.14 BAD85884.1 - 0.0037 17.6 1.6 0.026 14.8 0.1 2.0 1 1 1 2 2 2 1 Glutathione-dependent formaldehyde-activating enzyme Ribosomal_L37e PF01907.19 BAD85884.1 - 0.0042 17.2 2.6 0.0042 17.2 2.6 1.6 2 0 0 2 2 2 1 Ribosomal protein L37e RNA_POL_M_15KD PF02150.16 BAD85884.1 - 0.0073 16.2 2.6 0.02 14.8 2.6 1.7 1 1 0 1 1 1 1 RNA polymerases M/15 Kd subunit zf-NADH-PPase PF09297.11 BAD85884.1 - 0.034 13.8 0.4 0.034 13.8 0.4 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 BAD85884.1 - 0.051 13.6 5.2 0.079 13.0 5.0 1.5 1 1 0 1 1 1 0 Transposase zinc-ribbon domain DZR PF12773.7 BAD85884.1 - 0.069 13.2 2.5 0.22 11.6 2.5 1.7 1 1 0 1 1 1 0 Double zinc ribbon OrfB_Zn_ribbon PF07282.11 BAD85884.1 - 0.078 12.9 2.3 0.11 12.5 2.3 1.4 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zinc_ribbon_2 PF13240.6 BAD85884.1 - 0.079 12.7 0.4 0.079 12.7 0.4 2.2 2 0 0 2 2 2 0 zinc-ribbon domain MqsA_antitoxin PF15731.5 BAD85884.1 - 0.081 13.0 0.1 0.093 12.8 0.1 1.3 1 0 0 1 1 1 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA Nudix_N_2 PF14803.6 BAD85884.1 - 0.099 12.6 6.4 0.58 10.1 6.4 2.0 1 1 0 1 1 1 0 Nudix N-terminal zf_UBZ PF18439.1 BAD85884.1 - 0.37 10.4 2.9 5.2 6.7 0.2 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Ribosomal_S24e PF01282.19 BAD85885.1 - 9e-26 89.6 0.0 1.2e-25 89.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S24e DUF359 PF04019.12 BAD85886.1 - 8e-39 132.2 0.0 1e-38 131.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF359) Glyco_hydro_4 PF02056.16 BAD85886.1 - 0.039 13.5 0.0 0.053 13.1 0.0 1.1 1 0 0 1 1 1 0 Family 4 glycosyl hydrolase Csd3_N PF18059.1 BAD85886.1 - 0.046 14.3 0.0 0.087 13.4 0.0 1.4 1 0 0 1 1 1 0 Csd3 N-terminal DUF3903 PF13043.6 BAD85886.1 - 0.062 13.1 0.2 0.14 12.0 0.2 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3903) DUF4911 PF16256.5 BAD85886.1 - 0.13 12.3 0.1 0.45 10.5 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4911) Spt4 PF06093.13 BAD85887.1 - 3.9e-12 46.1 0.1 5.1e-12 45.7 0.1 1.2 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger RecR PF02132.15 BAD85887.1 - 0.00026 20.5 2.4 0.00043 19.8 2.4 1.4 1 0 0 1 1 1 1 RecR protein PHF5 PF03660.14 BAD85887.1 - 0.02 15.1 0.1 0.02 15.1 0.1 1.1 1 0 0 1 1 1 0 PHF5-like protein zf-ribbon_3 PF13248.6 BAD85887.1 - 0.035 13.5 2.7 0.14 11.6 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain NRDD PF13597.6 BAD85887.1 - 0.045 12.5 0.2 0.045 12.5 0.2 1.1 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase zf-RRN7 PF11781.8 BAD85887.1 - 0.071 12.8 0.1 0.071 12.8 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Rad50_zn_hook PF04423.14 BAD85887.1 - 0.071 13.0 0.6 0.28 11.1 0.1 1.9 2 0 0 2 2 2 0 Rad50 zinc hook motif PolC_DP2 PF03833.13 BAD85887.1 - 0.093 10.6 0.1 0.075 10.9 0.1 1.1 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 HypA PF01155.19 BAD85887.1 - 0.13 12.3 2.0 0.22 11.5 1.8 1.4 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Prim_Zn_Ribbon PF08273.12 BAD85887.1 - 0.27 11.6 0.8 0.27 11.6 0.8 2.0 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase DUF35_N PF12172.8 BAD85887.1 - 0.43 10.5 6.7 1 9.3 6.7 1.6 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) SHS2_Rpb7-N PF03876.17 BAD85888.1 - 1.2e-18 67.3 0.1 1.9e-18 66.6 0.1 1.3 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.23 BAD85888.1 - 1.4e-15 57.4 1.2 5.8e-15 55.4 1.2 2.0 1 1 0 1 1 1 1 S1 RNA binding domain RNA_pol_Rbc25 PF08292.12 BAD85888.1 - 0.0062 16.8 0.1 0.011 16.0 0.1 1.4 1 0 0 1 1 1 1 RNA polymerase III subunit Rpc25 Pyrophosphatase PF00719.19 BAD85889.1 - 1.3e-58 197.3 0.3 1.5e-58 197.2 0.3 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase DUF5305 PF17231.2 BAD85890.1 - 7.8e-11 41.8 1.5 1e-10 41.4 0.1 1.8 2 0 0 2 2 2 1 Family of unknown function (DUF5305) DUF11 PF01345.18 BAD85891.1 - 0.00053 20.2 0.9 0.0023 18.2 0.9 2.1 1 1 0 1 1 1 1 Domain of unknown function DUF11 fn3_5 PF06280.12 BAD85891.1 - 0.00087 20.0 0.2 0.002 18.8 0.2 1.5 1 0 0 1 1 1 1 Fn3-like domain BsuPI PF12690.7 BAD85891.1 - 0.0032 17.4 0.2 5 7.2 0.0 2.8 3 0 0 3 3 3 2 Intracellular proteinase inhibitor DUF4139 PF13598.6 BAD85891.1 - 0.06 13.1 0.1 0.14 11.9 0.0 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4139) Glyco_hydro_30C PF17189.4 BAD85891.1 - 0.11 12.7 0.6 10 6.4 0.0 2.6 2 0 0 2 2 2 0 Glycosyl hydrolase family 30 beta sandwich domain Peptidase_S24 PF00717.23 BAD85892.1 - 2.9e-10 40.0 0.0 6e-10 38.9 0.0 1.6 1 0 0 1 1 1 1 Peptidase S24-like DUF1102 PF06510.11 BAD85893.1 - 1.1e-58 197.5 0.8 1.3e-58 197.2 0.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1102) DUF1102 PF06510.11 BAD85894.1 - 2e-61 206.3 2.4 2.4e-61 206.1 2.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1102) LVIVD PF08309.11 BAD85894.1 - 0.071 12.4 0.6 0.15 11.4 0.6 1.5 1 0 0 1 1 1 0 LVIVD repeat KduI PF04962.12 BAD85894.1 - 0.085 12.2 0.1 0.13 11.6 0.1 1.2 1 0 0 1 1 1 0 KduI/IolB family YwiC PF14256.6 BAD85895.1 - 0.0063 16.8 0.5 0.0092 16.3 0.5 1.2 1 0 0 1 1 1 1 YwiC-like protein Codanin-1_C PF15296.6 BAD85895.1 - 0.025 14.6 0.0 0.036 14.1 0.0 1.2 1 0 0 1 1 1 0 Codanin-1 C-terminus DUF4777 PF16007.5 BAD85895.1 - 0.11 12.8 0.0 0.18 12.1 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4777) TrmB PF01978.19 BAD85896.1 - 0.0052 16.6 0.2 0.008 16.0 0.2 1.4 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Penicillinase_R PF03965.16 BAD85896.1 - 0.013 15.8 0.0 0.014 15.7 0.0 1.0 1 0 0 1 1 1 0 Penicillinase repressor MarR_2 PF12802.7 BAD85896.1 - 0.031 14.2 0.2 0.079 12.9 0.2 1.6 1 1 0 1 1 1 0 MarR family TFIID-31kDa PF02291.15 BAD85896.1 - 0.05 13.7 0.0 0.054 13.6 0.0 1.1 1 0 0 1 1 1 0 Transcription initiation factor IID, 31kD subunit Replic_Relax PF13814.6 BAD85896.1 - 0.053 13.6 0.0 0.06 13.4 0.0 1.0 1 0 0 1 1 1 0 Replication-relaxation GntR PF00392.21 BAD85896.1 - 0.054 13.2 0.0 0.081 12.6 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family DUF977 PF06163.11 BAD85896.1 - 0.067 13.1 0.1 0.073 13.0 0.1 1.0 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) HTH_Crp_2 PF13545.6 BAD85896.1 - 0.081 12.9 0.1 0.16 12.0 0.1 1.4 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain Epimerase PF01370.21 BAD85897.1 - 7.1e-58 195.9 0.0 8.8e-58 195.6 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 BAD85897.1 - 8.1e-55 186.5 0.0 1.2e-54 185.9 0.0 1.3 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 BAD85897.1 - 1.2e-25 90.1 0.0 1.5e-25 89.8 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 BAD85897.1 - 7.8e-18 64.6 0.0 9.9e-18 64.2 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 BAD85897.1 - 1.3e-16 60.6 0.0 1.1e-15 57.6 0.0 1.9 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.6 BAD85897.1 - 1.1e-12 48.3 0.0 1.5e-12 47.8 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 BAD85897.1 - 9.2e-11 41.7 0.0 3.1e-08 33.5 0.0 2.2 2 0 0 2 2 2 2 NmrA-like family NAD_binding_4 PF07993.12 BAD85897.1 - 7.5e-10 38.4 0.2 8.5e-08 31.7 0.2 2.5 1 1 0 1 1 1 1 Male sterility protein adh_short PF00106.25 BAD85897.1 - 6.9e-07 28.9 0.1 1.8e-06 27.5 0.0 1.8 2 1 0 2 2 2 1 short chain dehydrogenase KR PF08659.10 BAD85897.1 - 4.1e-05 23.6 0.1 0.00013 21.9 0.1 1.7 1 1 0 1 1 1 1 KR domain TrkA_N PF02254.18 BAD85897.1 - 0.01 16.1 0.0 0.018 15.3 0.0 1.4 1 0 0 1 1 1 1 TrkA-N domain Ldh_1_N PF00056.23 BAD85897.1 - 0.01 15.9 0.0 0.021 14.9 0.0 1.5 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 BAD85897.1 - 0.05 13.8 0.0 0.091 12.9 0.0 1.5 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Polbeta PF18765.1 BAD85898.1 - 7.6e-21 74.0 0.1 1e-20 73.6 0.1 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 BAD85898.1 - 0.00049 20.3 0.1 0.00068 19.9 0.1 1.3 1 1 0 1 1 1 1 Nucleotidyltransferase domain NTP_transf_6 PF06042.11 BAD85898.1 - 0.077 12.8 0.0 0.091 12.6 0.0 1.1 1 0 0 1 1 1 0 Nucleotidyltransferase TEA PF01285.18 BAD85898.1 - 0.1 12.7 0.0 0.16 12.0 0.0 1.3 1 0 0 1 1 1 0 TEA/ATTS domain DUF86 PF01934.17 BAD85899.1 - 1.2e-31 109.0 4.9 1.5e-31 108.7 4.9 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 NTP_transferase PF00483.23 BAD85900.1 - 2.4e-37 128.9 0.0 2.8e-37 128.6 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 BAD85900.1 - 7.7e-11 42.6 0.0 9.9e-11 42.3 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.24 BAD85900.1 - 1.4e-06 27.8 0.6 0.0011 18.6 0.5 3.5 2 1 1 3 3 3 2 Bacterial transferase hexapeptide (six repeats) Fucokinase PF07959.12 BAD85900.1 - 0.15 11.0 0.0 0.32 9.9 0.0 1.5 2 0 0 2 2 2 0 L-fucokinase Polysacc_synt PF01943.17 BAD85901.1 - 1.4e-28 100.1 12.0 1.4e-28 100.1 12.0 2.3 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 BAD85901.1 - 1.4e-17 64.1 5.8 1.4e-17 64.1 5.8 4.0 2 1 2 4 4 4 1 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.6 BAD85901.1 - 9.6e-12 44.7 4.6 9.6e-12 44.7 4.6 1.9 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein MurJ PF03023.14 BAD85901.1 - 3.8e-08 32.4 17.8 4.6e-07 28.8 17.9 2.2 1 1 0 1 1 1 1 Lipid II flippase MurJ MatE PF01554.18 BAD85901.1 - 4.1e-06 26.5 6.8 4.1e-06 26.5 6.8 3.2 4 1 0 4 4 4 1 MatE Glycos_transf_1 PF00534.20 BAD85902.1 - 3.5e-16 59.2 0.1 2.6e-15 56.4 0.0 2.4 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 BAD85902.1 - 1.2e-10 41.9 0.0 2.3e-10 41.0 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 BAD85902.1 - 0.0019 18.2 0.0 0.34 10.9 0.0 2.6 3 0 0 3 3 3 2 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 BAD85902.1 - 0.0036 17.7 0.0 0.0086 16.4 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_2 PF00535.26 BAD85903.1 - 7.2e-32 110.5 0.1 1.5e-31 109.5 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 BAD85903.1 - 1.3e-14 54.7 0.0 2.2e-14 53.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 BAD85903.1 - 6.5e-10 38.9 0.0 9.9e-10 38.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 BAD85903.1 - 1.8e-05 25.1 0.1 3.2e-05 24.3 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 TRPM_tetra PF16519.5 BAD85903.1 - 0.2 11.8 0.1 0.35 11.0 0.1 1.3 1 0 0 1 1 1 0 Tetramerisation domain of TRPM Glyphos_transf PF04464.14 BAD85904.1 - 4.3e-61 206.9 0.1 5.3e-61 206.6 0.1 1.0 1 0 0 1 1 1 1 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase IspD PF01128.19 BAD85905.1 - 1.6e-34 119.6 0.0 1.9e-34 119.4 0.0 1.0 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NTP_transf_3 PF12804.7 BAD85905.1 - 8.7e-06 26.2 0.0 1e-05 26.0 0.0 1.3 1 1 0 1 1 1 1 MobA-like NTP transferase domain NTP_transferase PF00483.23 BAD85905.1 - 0.028 14.0 0.0 0.039 13.5 0.0 1.2 1 0 0 1 1 1 0 Nucleotidyl transferase Glycos_transf_2 PF00535.26 BAD85906.1 - 7.6e-29 100.7 0.0 1e-28 100.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.9 BAD85906.1 - 8.1e-19 68.1 0.0 1.3e-18 67.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_3 PF13641.6 BAD85906.1 - 6e-18 65.6 0.0 4.8e-17 62.6 0.0 1.9 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 BAD85906.1 - 0.15 12.0 0.3 0.51 10.2 0.3 1.8 1 1 0 1 1 1 0 Glycosyl transferase family group 2 STT3 PF02516.14 BAD85907.1 - 1.9e-08 33.7 28.3 4.2e-06 26.0 0.3 2.4 2 1 0 2 2 2 2 Oligosaccharyl transferase STT3 subunit Polysacc_synt PF01943.17 BAD85908.1 - 1.4e-15 57.5 25.9 1.4e-15 57.5 25.9 2.2 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.6 BAD85908.1 - 9.1e-12 44.8 11.9 9.1e-12 44.8 11.9 2.6 3 1 0 3 3 3 1 Polysaccharide biosynthesis protein Glycos_transf_2 PF00535.26 BAD85909.1 - 2.5e-34 118.5 0.0 3.4e-34 118.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 BAD85909.1 - 9.6e-13 48.5 0.0 1.1e-12 48.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 BAD85909.1 - 1.4e-07 31.3 0.6 9.2e-07 28.6 0.0 2.0 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 BAD85909.1 - 0.01 16.3 0.0 0.021 15.3 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase family 2 Glyco_transf_21 PF13506.6 BAD85909.1 - 0.029 13.8 0.0 0.19 11.2 0.0 1.9 1 1 1 2 2 2 0 Glycosyl transferase family 21 Glycos_transf_1 PF00534.20 BAD85910.1 - 2.8e-33 114.9 0.0 5.3e-33 114.0 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 BAD85910.1 - 1.1e-19 71.2 0.0 1.8e-19 70.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 BAD85910.1 - 4.2e-15 56.2 0.0 6.7e-15 55.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 BAD85910.1 - 1.2e-07 32.0 0.0 2.3e-07 31.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 BAD85910.1 - 1.2e-05 25.8 0.0 0.00012 22.5 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 BAD85910.1 - 0.00094 19.2 0.1 0.0019 18.3 0.1 1.5 1 1 0 1 1 1 1 Glycosyl transferase 4-like Glycos_transf_2 PF00535.26 BAD85911.1 - 7.1e-31 107.3 1.0 3.3e-30 105.1 0.1 2.0 1 1 1 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 BAD85911.1 - 1.6e-15 57.6 0.0 2.3e-15 57.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 BAD85911.1 - 4.7e-12 46.0 1.4 4.6e-11 42.7 0.5 2.1 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 BAD85911.1 - 6.4e-05 23.4 0.0 0.00021 21.7 0.0 1.8 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_5 PF13712.6 BAD85911.1 - 0.0001 22.1 0.7 0.00022 21.0 0.3 1.7 1 1 1 2 2 2 1 Glycosyltransferase like family Glyco_trans_2_3 PF13632.6 BAD85911.1 - 0.0023 17.9 0.0 0.044 13.7 0.0 2.1 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glycos_transf_1 PF00534.20 BAD85912.1 - 1.6e-27 96.1 0.3 2.4e-27 95.6 0.3 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 BAD85912.1 - 1.9e-22 80.1 0.0 3e-22 79.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 BAD85912.1 - 5e-12 46.1 0.0 7.8e-12 45.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 BAD85912.1 - 1.2e-07 32.0 0.0 3.6e-07 30.5 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 BAD85912.1 - 0.00041 20.8 0.0 0.00066 20.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain DUF1351 PF07083.11 BAD85912.1 - 0.058 13.2 0.2 0.13 12.0 0.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1351) Peripla_BP_4 PF13407.6 BAD85912.1 - 0.072 12.7 0.0 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 Periplasmic binding protein domain AAA_11 PF13086.6 BAD85913.1 - 0.24 11.1 0.0 0.34 10.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain OspE PF02471.17 BAD85914.1 - 0.032 14.4 0.6 0.081 13.1 0.6 1.6 1 0 0 1 1 1 0 Borrelia outer surface protein E ARD PF03079.14 BAD85914.1 - 0.068 13.4 0.5 0.18 12.0 0.1 1.9 2 0 0 2 2 2 0 ARD/ARD' family CBM_4_9 PF02018.17 BAD85914.1 - 0.12 12.7 3.2 0.39 11.0 3.2 1.9 1 0 0 1 1 1 0 Carbohydrate binding domain DUF5625 PF18539.1 BAD85914.1 - 0.12 12.6 0.1 5 7.4 0.0 2.7 1 1 1 2 2 2 0 Domain of unknown function (DUF5625) PTPS_related PF10131.9 BAD85914.1 - 1 7.6 30.4 2 6.7 30.4 1.3 1 0 0 1 1 1 0 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein PIN_5 PF08745.11 BAD85915.1 - 0.13 11.7 0.5 0.23 10.9 0.1 1.5 2 0 0 2 2 2 0 PINc domain ribonuclease Uso1_p115_C PF04871.13 BAD85916.1 - 0.12 12.8 0.0 0.14 12.5 0.0 1.2 1 0 0 1 1 1 0 Uso1 / p115 like vesicle tethering protein, C terminal region Saf_2TM PF18303.1 BAD85917.1 - 5.9 6.5 7.6 0.86 9.2 0.5 3.1 3 1 2 5 5 5 0 SAVED-fused 2TM effector domain PMT_2 PF13231.6 BAD85918.1 - 3.7e-07 30.5 8.9 3.7e-07 30.5 8.9 2.2 1 1 1 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase NMN_transporter PF04973.12 BAD85918.1 - 0.64 10.0 7.8 0.15 12.0 0.4 2.7 2 1 1 3 3 3 0 Nicotinamide mononucleotide transporter DUF2198 PF09964.9 BAD85919.1 - 3.3 7.8 7.3 59 3.8 0.4 3.5 2 1 1 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2198) Glycos_transf_1 PF00534.20 BAD85920.1 - 1.6e-37 128.7 0.0 2.7e-37 127.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 BAD85920.1 - 3.4e-27 95.5 0.0 5.3e-27 94.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 BAD85920.1 - 1.7e-18 67.2 0.0 2.8e-18 66.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.6 BAD85920.1 - 1.8e-12 47.5 0.0 3.3e-12 46.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.6 BAD85920.1 - 1.8e-10 41.1 0.0 4.2e-10 39.9 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 BAD85920.1 - 6.8e-08 33.1 0.0 2e-07 31.6 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Epimerase_2 PF02350.19 BAD85920.1 - 0.13 11.1 0.0 0.24 10.2 0.0 1.4 1 0 0 1 1 1 0 UDP-N-acetylglucosamine 2-epimerase Glycos_transf_2 PF00535.26 BAD85921.1 - 4.1e-26 91.8 0.0 6.5e-26 91.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 BAD85921.1 - 1.5e-07 31.5 0.0 2.4e-07 30.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_7N PF13733.6 BAD85921.1 - 0.053 13.2 0.0 0.1 12.3 0.0 1.4 1 0 0 1 1 1 0 N-terminal region of glycosyl transferase group 7 Glutaredoxin PF00462.24 BAD85921.1 - 0.098 12.9 0.0 0.22 11.8 0.0 1.5 1 0 0 1 1 1 0 Glutaredoxin Glyco_tranf_2_4 PF13704.6 BAD85921.1 - 0.2 12.2 0.0 0.38 11.3 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 2 ATP1G1_PLM_MAT8 PF02038.16 BAD85921.1 - 9.6 5.7 13.2 0.58 9.6 1.6 2.9 3 0 0 3 3 3 0 ATP1G1/PLM/MAT8 family Glycos_transf_1 PF00534.20 BAD85922.1 - 2.8e-39 134.4 0.0 3.7e-39 134.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 BAD85922.1 - 9.1e-30 103.9 0.4 3.5e-28 98.7 0.3 2.2 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.6 BAD85922.1 - 1.2e-26 93.7 0.1 2.1e-26 93.0 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 BAD85922.1 - 6e-14 52.8 0.1 4.3e-13 50.0 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Hydrolase_6 PF13344.6 BAD85923.1 - 5.3e-29 100.3 0.0 8e-28 96.5 0.0 2.2 2 1 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 BAD85923.1 - 9.7e-20 70.4 0.1 4.4e-19 68.3 0.0 2.1 2 0 0 2 2 2 1 HAD-hyrolase-like Hydrolase PF00702.26 BAD85923.1 - 1.9e-09 38.1 0.0 8.1e-09 36.1 0.0 2.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 BAD85923.1 - 1.2e-08 35.2 1.4 0.00042 20.4 0.0 3.2 2 1 1 3 3 3 2 Haloacid dehalogenase-like hydrolase PGP_phosphatase PF09419.10 BAD85923.1 - 0.00095 18.8 0.0 0.0023 17.6 0.0 1.8 2 0 0 2 2 2 1 Mitochondrial PGP phosphatase SOR PF07682.11 BAD85923.1 - 0.13 11.2 0.0 0.2 10.5 0.0 1.3 1 0 0 1 1 1 0 Sulphur oxygenase reductase Rubrerythrin PF02915.17 BAD85924.1 - 5.8e-10 39.7 7.8 1.2e-06 29.0 1.5 2.6 1 1 0 2 2 2 2 Rubrerythrin Ribonuc_red_lgC PF02867.15 BAD85925.1 - 8.6e-230 763.7 0.0 9.1e-224 743.8 0.0 2.2 2 0 0 2 2 2 2 Ribonucleotide reductase, barrel domain Endonuc_subdom PF09062.10 BAD85925.1 - 8.5e-59 196.5 5.4 8.5e-59 196.5 5.4 2.4 2 0 0 2 2 1 1 PI-PfuI Endonuclease subdomain Stirrup PF09061.6 BAD85925.1 - 3.1e-51 171.5 0.5 8.3e-51 170.1 0.5 1.8 1 0 0 1 1 1 1 Stirrup Intein_splicing PF14890.6 BAD85925.1 - 4.3e-51 172.4 0.0 5.6e-31 107.3 0.0 3.4 2 1 0 2 2 2 2 Intein splicing domain LAGLIDADG_3 PF14528.6 BAD85925.1 - 3.9e-43 145.7 5.3 1.4e-20 73.4 0.4 4.9 4 0 0 4 4 4 4 LAGLIDADG-like domain Ribonuc_red_lgN PF00317.21 BAD85925.1 - 7.1e-29 99.7 0.0 2.5e-28 97.9 0.0 2.1 1 0 0 1 1 1 1 Ribonucleotide reductase, all-alpha domain ATP-cone PF03477.16 BAD85925.1 - 1.9e-21 76.4 1.4 6.7e-21 74.7 1.4 2.1 1 0 0 1 1 1 1 ATP cone domain Hom_end PF05204.14 BAD85925.1 - 6.6e-09 35.9 0.1 1.7e-05 25.0 0.0 3.7 4 0 0 4 4 4 1 Homing endonuclease LAGLIDADG_WhiA PF14527.6 BAD85925.1 - 1.8e-05 24.7 3.2 0.49 10.5 0.1 4.5 5 0 0 5 5 5 2 WhiA LAGLIDADG-like domain PT-HINT PF07591.11 BAD85925.1 - 0.0013 18.9 0.9 0.13 12.5 0.2 3.9 4 0 0 4 4 4 1 Pretoxin HINT domain LAGLIDADG_2 PF03161.13 BAD85925.1 - 0.012 15.7 0.1 8.8 6.3 0.0 3.0 3 0 0 3 3 3 0 LAGLIDADG DNA endonuclease family Pribosyltran PF00156.27 BAD85926.1 - 1.6e-27 96.0 0.3 2e-27 95.7 0.3 1.0 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 BAD85926.1 - 8e-06 25.4 0.1 1e-05 25.1 0.1 1.1 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 BAD85926.1 - 0.009 15.5 0.0 0.013 15.0 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase Lar_N PF09861.9 BAD85926.1 - 0.038 13.2 0.4 0.048 12.8 0.4 1.1 1 0 0 1 1 1 0 Lactate racemase N-terminal domain TRAM PF01938.20 BAD85926.1 - 0.077 13.0 0.9 0.19 11.7 0.4 1.9 2 0 0 2 2 2 0 TRAM domain MctB PF11382.8 BAD85926.1 - 0.15 11.8 0.3 0.28 10.8 0.2 1.5 1 1 1 2 2 2 0 Copper transport outer membrane protein, MctB LigT_PEase PF02834.16 BAD85927.1 - 5.2e-38 129.1 0.3 8.6e-22 77.1 0.2 2.0 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.6 BAD85927.1 - 2e-15 57.0 0.0 2.5e-15 56.7 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.9 BAD85927.1 - 2.8e-15 56.8 0.0 3.5e-15 56.5 0.0 1.1 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain RBFA PF02033.18 BAD85927.1 - 0.01 16.3 0.1 0.028 14.9 0.1 1.8 1 1 0 1 1 1 0 Ribosome-binding factor A NIR_SIR_ferr PF03460.17 BAD85927.1 - 0.014 15.3 0.0 0.041 13.7 0.0 1.8 1 0 0 1 1 1 0 Nitrite/Sulfite reductase ferredoxin-like half domain DUF1045 PF06299.12 BAD85927.1 - 0.031 14.2 0.0 0.068 13.1 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1045) MreB_Mbl PF06723.13 BAD85927.1 - 0.08 11.8 0.2 0.09 11.6 0.2 1.2 1 0 0 1 1 1 0 MreB/Mbl protein TraC PF07820.12 BAD85927.1 - 1.1 9.6 5.2 1.7 9.0 2.3 2.3 2 0 0 2 2 2 0 TraC-like protein VAPB_antitox PF02697.14 BAD85927.1 - 3.2 8.6 6.7 3.4 8.5 0.9 3.2 3 1 0 3 3 3 0 Putative antitoxin DUF3243 PF11588.8 BAD85928.1 - 0.038 14.3 0.0 0.12 12.7 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3243) MetOD2 PF18548.1 BAD85928.1 - 0.072 13.2 2.0 0.14 12.3 0.2 2.4 2 1 0 2 2 2 0 Metanogen output domain 2 AHD PF17793.1 BAD85928.1 - 0.11 12.3 0.8 0.29 11.0 0.8 1.7 1 0 0 1 1 1 0 ANC1 homology domain (AHD) DUF4200 PF13863.6 BAD85928.1 - 0.8 10.1 6.0 3.5 8.1 6.1 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4200) PQQ_2 PF13360.6 BAD85929.1 - 1.1e-06 28.4 1.8 0.00079 19.1 0.2 2.1 1 1 1 2 2 2 2 PQQ-like domain PQQ_3 PF13570.6 BAD85929.1 - 0.088 13.3 7.4 51 4.5 0.0 5.0 5 0 0 5 5 5 0 PQQ-like domain tRNA_NucTransf2 PF09249.11 BAD85930.1 - 5.3e-40 136.2 0.0 9.2e-40 135.4 0.0 1.4 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.23 BAD85930.1 - 2.5e-12 46.9 0.6 8.9e-12 45.2 0.1 2.2 2 0 0 2 2 2 1 Nucleotidyltransferase domain SMODS PF18144.1 BAD85930.1 - 0.0046 17.1 0.0 0.0096 16.1 0.0 1.5 1 1 0 1 1 1 1 Second Messenger Oligonucleotide or Dinucleotide Synthetase domain OAS1_C PF10421.9 BAD85930.1 - 0.033 13.7 0.0 0.054 13.0 0.0 1.3 1 0 0 1 1 1 0 2'-5'-oligoadenylate synthetase 1, domain 2, C-terminus SIS PF01380.22 BAD85933.1 - 0.019 14.8 0.0 0.027 14.3 0.0 1.2 1 0 0 1 1 1 0 SIS domain PQQ PF01011.21 BAD85933.1 - 0.091 12.7 0.1 0.15 12.0 0.1 1.3 1 0 0 1 1 1 0 PQQ enzyme repeat EamA PF00892.20 BAD85934.1 - 6.5e-42 143.0 29.3 5.7e-22 78.4 12.1 2.0 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.16 BAD85934.1 - 0.00011 21.6 6.0 0.0082 15.5 1.9 2.1 1 1 1 2 2 2 2 Triose-phosphate Transporter family PUNUT PF16913.5 BAD85934.1 - 0.072 12.3 13.1 0.019 14.2 9.1 2.0 1 1 0 1 1 1 0 Purine nucleobase transmembrane transport DUF4239 PF14023.6 BAD85934.1 - 2.2 8.0 6.0 0.18 11.5 0.9 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF4239) DUF3140 PF11338.8 BAD85935.1 - 0.018 15.4 0.5 0.058 13.8 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3140) NTPase_I-T PF01931.18 BAD85936.1 - 1.6e-54 184.1 0.0 1.8e-54 183.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF84 tRNA-synt_1 PF00133.22 BAD85937.1 - 4e-188 626.4 11.1 6.3e-188 625.8 11.1 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 BAD85937.1 - 9e-38 129.6 0.0 2.6e-37 128.1 0.0 1.8 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 BAD85937.1 - 8.7e-25 87.3 5.9 1.8e-08 33.6 0.4 3.9 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 BAD85937.1 - 4.2e-07 29.6 0.0 0.00015 21.3 0.0 2.5 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 BAD85937.1 - 0.00016 20.7 0.0 0.013 14.5 0.0 2.5 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1_2 PF13603.6 BAD85937.1 - 0.0029 17.1 0.0 0.0082 15.7 0.0 1.8 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 DUF4720 PF15846.5 BAD85937.1 - 0.011 15.5 0.0 0.96 9.3 0.0 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4720) zf-FPG_IleRS PF06827.14 BAD85937.1 - 0.075 12.9 0.1 0.075 12.9 0.1 1.9 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS Peptidase_C39_2 PF13529.6 BAD85939.1 - 8.7e-06 26.4 0.5 4.9e-05 23.9 0.4 2.3 1 1 1 2 2 2 1 Peptidase_C39 like family PIN PF01850.21 BAD85940.1 - 2.7e-13 50.5 0.0 4.3e-13 49.8 0.0 1.2 1 0 0 1 1 1 1 PIN domain DUF5615 PF18480.1 BAD85940.1 - 0.037 13.8 0.0 0.054 13.2 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF5615) VAPB_antitox PF02697.14 BAD85941.1 - 1.8e-23 83.1 2.8 2e-23 82.9 2.8 1.0 1 0 0 1 1 1 1 Putative antitoxin DegV PF02645.16 BAD85941.1 - 0.027 13.8 0.1 0.032 13.6 0.1 1.0 1 0 0 1 1 1 0 Uncharacterised protein, DegV family COG1307 DUF4635 PF15466.6 BAD85941.1 - 0.037 13.6 0.5 0.04 13.4 0.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4635) Uds1 PF15456.6 BAD85941.1 - 0.047 13.9 0.0 0.073 13.2 0.0 1.2 1 0 0 1 1 1 0 Up-regulated During Septation RIC3 PF15361.6 BAD85941.1 - 0.066 13.6 0.3 0.084 13.3 0.3 1.1 1 0 0 1 1 1 0 Resistance to inhibitors of cholinesterase homologue 3 DUF835 PF05763.12 BAD85942.1 - 1.3e-39 135.1 0.0 5.5e-39 133.0 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF835) Glyco_hydro_42 PF02449.15 BAD85943.1 - 4.1e-72 243.6 0.2 5.4e-72 243.2 0.2 1.1 1 0 0 1 1 1 1 Beta-galactosidase Glyco_hydro_35 PF01301.19 BAD85943.1 - 6.9e-47 160.6 0.4 1.1e-38 133.7 0.1 3.0 3 0 0 3 3 3 2 Glycosyl hydrolases family 35 Glyco_hydro_42M PF08532.10 BAD85943.1 - 0.0046 16.5 0.0 0.012 15.1 0.0 1.7 1 1 0 1 1 1 1 Beta-galactosidase trimerisation domain DUF4350 PF14258.6 BAD85943.1 - 0.15 12.5 0.1 0.55 10.7 0.1 2.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4350) SIS PF01380.22 BAD85944.1 - 1.2e-18 67.3 0.0 3.4e-08 33.4 0.0 2.2 2 0 0 2 2 2 2 SIS domain ABC_tran PF00005.27 BAD85945.1 - 5.1e-30 104.8 0.0 6.6e-30 104.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 BAD85945.1 - 1.7e-20 73.3 0.1 2.7e-20 72.6 0.1 1.3 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_22 PF13401.6 BAD85945.1 - 1.7e-05 25.1 0.3 0.00037 20.8 0.3 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 BAD85945.1 - 0.0055 17.1 0.1 0.0079 16.6 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 BAD85945.1 - 0.0062 16.2 0.0 0.013 15.3 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 BAD85945.1 - 0.026 14.0 0.0 0.071 12.5 0.0 1.6 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain Mg_chelatase PF01078.21 BAD85945.1 - 0.037 13.4 0.0 0.058 12.8 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI PRK PF00485.18 BAD85945.1 - 0.075 12.8 0.0 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_15 PF13175.6 BAD85945.1 - 0.13 11.9 0.0 0.17 11.5 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain AAA PF00004.29 BAD85945.1 - 0.13 12.7 0.0 0.59 10.6 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.22 BAD85945.1 - 0.14 11.3 0.0 0.25 10.5 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain ATPase PF06745.13 BAD85945.1 - 0.19 11.1 0.2 0.31 10.3 0.2 1.2 1 0 0 1 1 1 0 KaiC RsgA_GTPase PF03193.16 BAD85945.1 - 0.19 11.6 0.0 0.35 10.7 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_23 PF13476.6 BAD85945.1 - 0.32 11.5 0.7 0.54 10.7 0.7 1.4 1 1 0 1 1 1 0 AAA domain AAA_21 PF13304.6 BAD85945.1 - 0.36 10.6 1.6 0.49 10.1 0.2 1.8 1 1 1 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system ABC_tran PF00005.27 BAD85946.1 - 5.4e-23 82.0 0.0 7.2e-23 81.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 BAD85946.1 - 5.4e-20 71.7 0.1 9.5e-20 70.9 0.1 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_22 PF13401.6 BAD85946.1 - 9.8e-06 25.9 0.3 2.9e-05 24.4 0.3 1.7 1 1 0 1 1 1 1 AAA domain AAA_21 PF13304.6 BAD85946.1 - 6.2e-05 23.0 1.4 0.00023 21.1 0.2 2.0 1 1 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 BAD85946.1 - 0.0031 17.0 0.1 0.0065 15.9 0.1 1.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 BAD85946.1 - 0.0038 16.9 0.0 0.0072 16.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 BAD85946.1 - 0.018 15.0 0.0 0.035 14.0 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase TniB PF05621.11 BAD85946.1 - 0.022 14.2 0.3 1.8 7.9 0.1 2.2 2 0 0 2 2 2 0 Bacterial TniB protein ATP-synt_ab PF00006.25 BAD85946.1 - 0.037 13.7 0.0 0.057 13.1 0.0 1.4 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain NTPase_1 PF03266.15 BAD85946.1 - 0.044 13.7 2.0 2.8 7.8 0.0 2.4 2 0 0 2 2 2 0 NTPase NACHT PF05729.12 BAD85946.1 - 0.055 13.4 0.1 0.13 12.2 0.1 1.6 1 0 0 1 1 1 0 NACHT domain AAA_23 PF13476.6 BAD85946.1 - 0.058 13.9 0.3 0.12 12.9 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 BAD85946.1 - 0.074 13.4 0.2 0.12 12.7 0.2 1.5 1 1 0 1 1 1 0 AAA ATPase domain PRK PF00485.18 BAD85946.1 - 0.077 12.7 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family GTP_EFTU PF00009.27 BAD85946.1 - 0.084 12.4 0.0 0.17 11.4 0.0 1.4 1 0 0 1 1 1 0 Elongation factor Tu GTP binding domain Rad17 PF03215.15 BAD85946.1 - 0.089 12.7 0.1 0.27 11.2 0.0 1.7 2 0 0 2 2 2 0 Rad17 P-loop domain AAA_33 PF13671.6 BAD85946.1 - 0.13 12.4 0.0 0.2 11.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 BAD85946.1 - 0.16 12.4 0.0 0.38 11.1 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA PF00004.29 BAD85946.1 - 0.19 12.1 0.7 2.7 8.4 0.7 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 BAD85946.1 - 0.2 11.9 1.0 14 5.8 0.0 2.2 1 1 0 2 2 2 0 AAA domain DUF87 PF01935.17 BAD85946.1 - 0.33 11.0 1.4 1.1 9.3 0.1 2.1 2 1 0 2 2 2 0 Helicase HerA, central domain BPD_transp_1 PF00528.22 BAD85947.1 - 7.5e-23 81.2 16.8 7.5e-23 81.2 16.8 2.0 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 BAD85947.1 - 0.0021 18.0 0.1 0.0021 18.0 0.1 3.8 4 0 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C DUF423 PF04241.15 BAD85947.1 - 0.15 12.3 0.3 0.15 12.3 0.3 2.7 3 1 1 4 4 4 0 Protein of unknown function (DUF423) BPD_transp_1 PF00528.22 BAD85948.1 - 4e-43 147.3 14.2 4e-43 147.3 14.2 1.9 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.22 BAD85949.1 - 1.5e-73 248.0 2.7 1.5e-73 248.0 2.7 1.5 2 0 0 2 2 2 1 Bacterial extracellular solute-binding proteins, family 5 Middle OpuAC PF04069.12 BAD85949.1 - 0.00012 21.8 0.1 0.00029 20.5 0.1 1.6 1 0 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system SSP160 PF06933.11 BAD85949.1 - 2.7 6.1 9.3 3.8 5.6 9.3 1.1 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 Glyco_hydro_1 PF00232.18 BAD85950.1 - 1.9e-64 217.8 3.9 1.2e-54 185.5 1.2 2.9 2 1 0 2 2 2 2 Glycosyl hydrolase family 1 VAPB_antitox PF02697.14 BAD85951.1 - 0.0021 18.8 6.6 0.0029 18.4 6.6 1.2 1 0 0 1 1 1 1 Putative antitoxin PIN PF01850.21 BAD85952.1 - 0.0014 19.1 1.1 0.0022 18.5 1.1 1.3 1 0 0 1 1 1 1 PIN domain PIG-L PF02585.17 BAD85953.1 - 1.6e-26 93.5 0.0 2.4e-26 92.9 0.0 1.3 1 0 0 1 1 1 1 GlcNAc-PI de-N-acetylase Glyco_hydro_18 PF00704.28 BAD85954.1 - 1.4e-98 330.5 9.2 2e-92 310.3 4.5 3.0 2 1 0 2 2 2 2 Glycosyl hydrolases family 18 CBM_2 PF00553.19 BAD85954.1 - 6.9e-13 48.8 11.8 2.1e-06 28.0 1.4 3.1 2 1 1 3 3 3 2 Cellulose binding domain CBM_5_12_2 PF14600.6 BAD85954.1 - 2.7e-06 27.2 1.7 2.7e-06 27.2 1.7 2.5 2 0 0 2 2 2 1 Cellulose-binding domain Radical_SAM PF04055.21 BAD85955.1 - 2.4e-12 47.5 0.1 6.4e-12 46.2 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.6 BAD85955.1 - 3.3e-06 27.2 0.0 5.7e-06 26.5 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 BAD85955.1 - 0.00025 21.4 0.0 0.00048 20.4 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain RNase_P_Rpp14 PF01900.19 BAD85956.1 - 3e-22 78.8 0.0 3.5e-22 78.6 0.0 1.0 1 0 0 1 1 1 1 Rpp14/Pop5 family CDC48_N PF02359.18 BAD85956.1 - 0.06 13.5 0.0 0.099 12.8 0.0 1.3 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), N-terminal domain Glyco_transf_5 PF08323.11 BAD85957.1 - 2.2e-35 122.5 0.0 3.1e-35 122.1 0.0 1.2 1 0 0 1 1 1 1 Starch synthase catalytic domain Glycos_transf_1 PF00534.20 BAD85957.1 - 1.1e-25 90.1 0.0 1.7e-25 89.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 BAD85957.1 - 4e-23 82.3 0.0 6.8e-23 81.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 BAD85957.1 - 3.5e-16 59.7 0.3 1.4e-15 57.7 0.3 2.0 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 BAD85957.1 - 5.3e-11 43.2 0.1 1.6e-10 41.6 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 BAD85957.1 - 8.2e-05 22.7 0.1 0.002 18.2 0.1 2.2 1 1 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.6 BAD85957.1 - 0.026 14.9 0.0 0.059 13.8 0.0 1.6 1 0 0 1 1 1 0 Glycosyl transferases group 1 Regulator_TrmB PF11495.8 BAD85958.1 - 1.1e-58 198.3 0.0 1.6e-58 197.7 0.0 1.3 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.19 BAD85958.1 - 4.6e-25 87.3 0.0 8.1e-25 86.5 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_9 PF08221.11 BAD85958.1 - 0.011 15.9 0.0 0.022 14.9 0.0 1.4 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Rrf2 PF02082.20 BAD85958.1 - 0.015 15.7 0.0 0.034 14.5 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator HTH_IclR PF09339.10 BAD85958.1 - 0.068 13.0 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain CENP-B_N PF04218.13 BAD85958.1 - 0.078 12.6 0.0 0.15 11.7 0.0 1.5 1 0 0 1 1 1 0 CENP-B N-terminal DNA-binding domain LexA_DNA_bind PF01726.16 BAD85958.1 - 0.18 11.6 0.0 0.37 10.6 0.0 1.5 1 0 0 1 1 1 0 LexA DNA binding domain Alpha-amylase PF00128.24 BAD85959.1 - 1.1e-59 202.7 0.0 1.6e-59 202.2 0.0 1.2 1 0 0 1 1 1 1 Alpha amylase, catalytic domain Alpha-amylase_N PF02903.14 BAD85959.1 - 2e-14 53.8 0.1 7.9e-14 51.9 0.1 1.9 2 0 0 2 2 2 1 Alpha amylase, N-terminal ig-like domain AMPK1_CBM PF16561.5 BAD85959.1 - 0.0012 19.0 0.0 0.0029 17.8 0.0 1.6 1 0 0 1 1 1 1 Glycogen recognition site of AMP-activated protein kinase Malt_amylase_C PF16657.5 BAD85959.1 - 0.0027 17.8 0.0 0.0073 16.4 0.0 1.7 1 0 0 1 1 1 1 Maltogenic Amylase, C-terminal domain SBP_bac_8 PF13416.6 BAD85960.1 - 1.5e-53 182.4 9.5 2.2e-53 181.9 9.5 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 BAD85960.1 - 2.3e-44 152.6 16.0 3.6e-44 152.0 16.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 BAD85960.1 - 9e-09 35.1 1.2 7.4e-06 25.5 0.2 2.3 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein Mucin PF01456.17 BAD85960.1 - 0.1 12.6 14.5 0.17 11.9 14.5 1.3 1 0 0 1 1 1 0 Mucin-like glycoprotein CRISPR_Cas9_WED PF18061.1 BAD85960.1 - 0.14 12.3 0.2 0.6 10.2 0.0 2.0 2 0 0 2 2 2 0 CRISPR-Cas9 WED domain SSP160 PF06933.11 BAD85960.1 - 0.72 8.0 6.6 0.99 7.5 6.6 1.1 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 BPD_transp_1 PF00528.22 BAD85961.1 - 5.7e-16 58.8 18.4 5.7e-16 58.8 18.4 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component TM_PBP2_N PF16296.5 BAD85961.1 - 0.0033 17.5 0.2 0.0078 16.3 0.2 1.6 1 0 0 1 1 1 1 N-terminal of TM subunit in PBP-dependent ABC transporters GTA_holin_3TM PF11351.8 BAD85961.1 - 1.3 9.6 3.9 2.4 8.7 1.9 2.5 1 1 1 2 2 2 0 Holin of 3TMs, for gene-transfer release BPD_transp_1 PF00528.22 BAD85962.1 - 3.2e-17 62.9 26.7 1.3e-16 60.8 22.3 2.6 2 1 1 3 3 3 2 Binding-protein-dependent transport system inner membrane component Ac76 PF05814.11 BAD85962.1 - 0.0064 16.5 0.6 0.0064 16.5 0.6 3.1 3 0 0 3 3 3 1 Orf76 (Ac76) Orf78 PF06024.12 BAD85962.1 - 0.07 13.4 0.4 0.07 13.4 0.4 2.2 3 0 0 3 3 3 0 Orf78 (ac78) Glyco_hydro_57 PF03065.15 BAD85963.1 - 5.3e-110 367.6 5.8 9.1e-110 366.9 5.8 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 Glucodextran_C PF09985.9 BAD85963.1 - 4.6e-79 265.1 0.4 1.7e-78 263.2 0.1 2.0 2 0 0 2 2 2 1 C-terminal binding-module, SLH-like, of glucodextranase ABC_tran PF00005.27 BAD85964.1 - 2.5e-32 112.2 0.0 4.4e-32 111.5 0.0 1.4 1 0 0 1 1 1 1 ABC transporter OB_MalK PF17912.1 BAD85964.1 - 4.3e-18 65.9 0.1 1.9e-17 63.8 0.0 2.2 2 0 0 2 2 1 1 MalK OB fold domain TOBE_2 PF08402.10 BAD85964.1 - 2.7e-06 27.4 0.1 1.2e-05 25.4 0.0 2.1 2 0 0 2 2 2 1 TOBE domain AAA_21 PF13304.6 BAD85964.1 - 5.4e-06 26.4 0.0 0.036 13.9 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system CysA_C_terminal PF17850.1 BAD85964.1 - 3e-05 24.5 0.2 0.00014 22.4 0.0 2.3 3 0 0 3 3 2 1 CysA C-terminal regulatory domain SMC_N PF02463.19 BAD85964.1 - 0.00033 20.2 0.0 0.0029 17.1 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain TOBE PF03459.17 BAD85964.1 - 0.0012 19.1 0.1 0.0034 17.7 0.1 1.8 1 0 0 1 1 1 1 TOBE domain Rad17 PF03215.15 BAD85964.1 - 0.0014 18.5 0.0 0.0025 17.8 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_22 PF13401.6 BAD85964.1 - 0.0017 18.6 0.4 0.0063 16.8 0.4 2.0 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 BAD85964.1 - 0.0033 17.8 0.0 0.0052 17.2 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 BAD85964.1 - 0.0058 17.1 0.0 0.021 15.2 0.0 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 BAD85964.1 - 0.0089 15.8 0.0 0.048 13.4 0.0 2.1 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_25 PF13481.6 BAD85964.1 - 0.0094 15.5 0.2 0.28 10.7 0.0 2.5 3 0 0 3 3 3 1 AAA domain Syntaxin PF00804.25 BAD85964.1 - 0.023 14.4 0.7 0.039 13.6 0.7 1.4 1 1 0 1 1 1 0 Syntaxin AAA_30 PF13604.6 BAD85964.1 - 0.027 14.2 0.1 0.077 12.7 0.0 1.7 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 BAD85964.1 - 0.029 14.3 0.0 0.063 13.2 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_5 PF07728.14 BAD85964.1 - 0.095 12.7 0.4 0.33 11.0 0.1 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_27 PF13514.6 BAD85964.1 - 0.13 11.9 0.0 0.23 11.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 BAD85964.1 - 0.13 12.2 0.1 0.34 10.8 0.1 1.7 1 0 0 1 1 1 0 NACHT domain AAA_19 PF13245.6 BAD85964.1 - 0.13 12.6 0.1 0.3 11.4 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 BAD85964.1 - 0.18 11.5 0.0 0.33 10.6 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain AAA_28 PF13521.6 BAD85964.1 - 0.21 11.8 0.3 0.52 10.5 0.1 1.7 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 BAD85964.1 - 0.26 11.8 0.1 0.49 10.9 0.1 1.4 1 0 0 1 1 1 0 AAA domain G-alpha PF00503.20 BAD85964.1 - 0.26 10.4 0.0 0.39 9.8 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit UPF0146 PF03686.13 BAD85965.1 - 9.5e-33 112.8 0.0 1e-32 112.7 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0146) TehB PF03848.14 BAD85965.1 - 0.015 14.7 0.0 0.02 14.3 0.0 1.1 1 0 0 1 1 1 0 Tellurite resistance protein TehB ADH_zinc_N PF00107.26 BAD85965.1 - 0.016 15.2 0.0 0.035 14.1 0.0 1.6 1 1 1 2 2 2 0 Zinc-binding dehydrogenase TrkA_N PF02254.18 BAD85965.1 - 0.1 12.9 0.0 0.15 12.3 0.0 1.2 1 0 0 1 1 1 0 TrkA-N domain PGM_PMM_I PF02878.16 BAD85966.1 - 4.9e-38 129.9 0.0 1.8e-37 128.1 0.0 1.9 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 BAD85966.1 - 2.6e-25 89.0 0.1 5.4e-25 88.0 0.1 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.20 BAD85966.1 - 1.6e-12 47.4 0.2 1.3e-11 44.5 0.2 2.4 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain PGM_PMM_III PF02880.16 BAD85966.1 - 0.00012 22.2 0.0 0.00037 20.7 0.0 1.9 1 1 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Lactamase_B_2 PF12706.7 BAD85967.1 - 1.1e-27 96.9 0.2 1.4e-27 96.5 0.2 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 BAD85967.1 - 3.6e-07 30.2 0.0 8.1e-07 29.1 0.0 1.6 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 BAD85967.1 - 9e-06 25.8 1.0 6e-05 23.1 1.0 2.1 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily DUF2510 PF10708.9 BAD85967.1 - 0.3 10.9 1.4 3.5 7.5 0.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2510) OPT PF03169.15 BAD85968.1 - 4.1e-105 352.7 50.7 5e-105 352.4 50.7 1.1 1 0 0 1 1 1 1 OPT oligopeptide transporter protein PqqD PF05402.12 BAD85969.1 - 2.3e-15 56.6 0.0 2.9e-15 56.3 0.0 1.3 1 0 0 1 1 1 1 Coenzyme PQQ synthesis protein D (PqqD) DUF4317 PF14199.6 BAD85969.1 - 0.12 11.5 0.0 0.19 10.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4317) Peptidase_M20 PF01546.28 BAD85970.1 - 6.8e-39 133.7 0.0 8.5e-39 133.4 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 BAD85970.1 - 8.9e-21 73.9 0.0 1.8e-20 72.8 0.0 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 BAD85970.1 - 1.9e-05 24.5 0.0 3.5e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M28 Pox_L3_FP4 PF03339.14 BAD85970.1 - 0.26 10.2 0.0 0.39 9.7 0.0 1.2 1 0 0 1 1 1 0 Poxvirus L3/FP4 protein Serpin PF00079.20 BAD85971.1 - 3.6e-120 401.7 0.0 4.1e-120 401.5 0.0 1.0 1 0 0 1 1 1 1 Serpin (serine protease inhibitor) MTS PF05175.14 BAD85973.1 - 2.9e-08 33.4 0.0 1.9e-05 24.3 0.0 2.0 2 0 0 2 2 2 2 Methyltransferase small domain Methyltransf_10 PF05971.12 BAD85973.1 - 5.1e-08 32.6 0.0 2e-07 30.7 0.0 1.7 1 1 0 1 1 1 1 RNA methyltransferase Methyltransf_25 PF13649.6 BAD85973.1 - 5.7e-08 33.3 0.0 3e-07 31.0 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 BAD85973.1 - 3e-07 30.3 0.0 4.1e-07 29.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 BAD85973.1 - 6.5e-06 25.8 0.0 9.8e-06 25.2 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) PCMT PF01135.19 BAD85973.1 - 0.00034 20.4 0.0 0.00055 19.7 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_11 PF08241.12 BAD85973.1 - 0.00051 20.6 0.0 0.0034 18.0 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 BAD85973.1 - 0.0013 18.6 0.0 0.0056 16.5 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 BAD85973.1 - 0.0014 18.0 0.0 0.003 16.9 0.0 1.4 2 0 0 2 2 2 1 Mycolic acid cyclopropane synthetase RrnaAD PF00398.20 BAD85973.1 - 0.0019 17.3 0.0 0.0028 16.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_18 PF12847.7 BAD85973.1 - 0.0021 18.0 0.0 0.0029 17.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 BAD85973.1 - 0.0032 18.2 0.0 0.0095 16.7 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_16 PF10294.9 BAD85973.1 - 0.0035 17.1 0.0 0.005 16.6 0.0 1.2 1 0 0 1 1 1 1 Lysine methyltransferase Cons_hypoth95 PF03602.15 BAD85973.1 - 0.0058 16.3 0.0 0.0094 15.6 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 PepSY_2 PF13670.6 BAD85973.1 - 0.017 15.1 0.0 3.6 7.7 0.0 2.3 2 0 0 2 2 2 0 Peptidase propeptide and YPEB domain Methyltransf_4 PF02390.17 BAD85973.1 - 0.026 14.0 0.0 0.095 12.2 0.0 1.7 2 0 0 2 2 2 0 Putative methyltransferase Methyltransf_3 PF01596.17 BAD85973.1 - 0.074 12.2 0.0 0.11 11.7 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase Methyltrans_SAM PF10672.9 BAD85974.1 - 2.2e-20 73.0 0.0 3.1e-20 72.5 0.0 1.3 1 0 0 1 1 1 1 S-adenosylmethionine-dependent methyltransferase Met_10 PF02475.16 BAD85974.1 - 1.1e-18 67.8 0.3 1.6e-18 67.2 0.3 1.3 1 0 0 1 1 1 1 Met-10+ like-protein PUA_3 PF17785.1 BAD85974.1 - 2.5e-16 59.2 0.1 5.4e-16 58.2 0.1 1.6 1 0 0 1 1 1 1 PUA-like domain PUA PF01472.20 BAD85974.1 - 7.5e-15 54.7 0.7 1.8e-14 53.4 0.7 1.7 1 0 0 1 1 1 1 PUA domain Cons_hypoth95 PF03602.15 BAD85974.1 - 5.4e-14 52.2 0.0 9.8e-14 51.4 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 PrmA PF06325.13 BAD85974.1 - 1.3e-11 44.5 0.0 2.2e-11 43.7 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_31 PF13847.6 BAD85974.1 - 7.8e-10 38.7 0.0 1.3e-09 38.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 BAD85974.1 - 9.9e-10 38.2 0.0 1.7e-09 37.4 0.0 1.4 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_3 PF01596.17 BAD85974.1 - 3.1e-08 33.1 0.3 9.1e-08 31.5 0.1 1.7 1 1 1 2 2 2 1 O-methyltransferase TRM PF02005.16 BAD85974.1 - 2.1e-07 30.5 0.0 2.8e-07 30.0 0.0 1.2 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_25 PF13649.6 BAD85974.1 - 1.5e-06 28.9 0.0 3.4e-06 27.7 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 BAD85974.1 - 1.4e-05 24.7 0.0 2.3e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltr_RsmB-F PF01189.17 BAD85974.1 - 2.7e-05 23.9 0.0 0.00087 19.0 0.0 2.2 1 1 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltransf_23 PF13489.6 BAD85974.1 - 0.00069 19.5 0.0 0.0012 18.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.19 BAD85974.1 - 0.0009 19.4 0.0 0.0018 18.4 0.0 1.4 1 0 0 1 1 1 1 FtsJ-like methyltransferase UPF0020 PF01170.18 BAD85974.1 - 0.0032 17.2 0.1 0.094 12.4 0.0 2.7 2 1 0 2 2 2 1 Putative RNA methylase family UPF0020 Methyltransf_18 PF12847.7 BAD85974.1 - 0.0066 16.4 0.0 0.013 15.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 BAD85974.1 - 0.035 14.7 0.0 0.098 13.3 0.0 1.9 1 0 0 1 1 1 0 Methyltransferase domain DNA_methylase PF00145.17 BAD85974.1 - 0.069 12.5 0.1 0.14 11.5 0.0 1.5 2 0 0 2 2 2 0 C-5 cytosine-specific DNA methylase FACT-Spt16_Nlob PF14826.6 BAD85974.1 - 0.13 12.0 0.1 2.2 8.1 0.0 2.2 2 0 0 2 2 2 0 FACT complex subunit SPT16 N-terminal lobe domain TctA PF01970.16 BAD85976.1 - 6.1e-41 140.5 43.2 8.2e-41 140.1 43.2 1.1 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family tRNA_anti-codon PF01336.25 BAD85977.1 - 0.00036 20.5 0.1 0.67 10.0 0.0 4.2 5 0 0 5 5 5 2 OB-fold nucleic acid binding domain ATPase PF06745.13 BAD85978.1 - 5e-77 258.4 0.2 5.5e-77 258.2 0.2 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 BAD85978.1 - 2e-10 40.6 0.0 2.9e-10 40.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain GvpD PF07088.11 BAD85978.1 - 4e-10 38.9 0.1 5.7e-10 38.4 0.1 1.1 1 0 0 1 1 1 1 GvpD gas vesicle protein T2SSE PF00437.20 BAD85978.1 - 0.00011 21.4 0.0 0.0002 20.5 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein DnaB_C PF03796.15 BAD85978.1 - 0.00011 21.6 0.0 0.00043 19.7 0.0 1.8 1 1 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_22 PF13401.6 BAD85978.1 - 0.00016 21.9 0.1 0.00043 20.6 0.1 1.6 1 1 0 1 1 1 1 AAA domain RecA PF00154.21 BAD85978.1 - 0.00037 20.0 0.1 0.00089 18.8 0.0 1.6 2 0 0 2 2 2 1 recA bacterial DNA recombination protein AAA_14 PF13173.6 BAD85978.1 - 0.001 19.1 0.0 0.0022 18.1 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 BAD85978.1 - 0.0013 18.4 0.1 0.012 15.3 0.1 2.1 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_18 PF13238.6 BAD85978.1 - 0.0016 18.9 1.0 0.031 14.8 1.0 2.7 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.6 BAD85978.1 - 0.0056 16.4 0.1 0.0095 15.7 0.1 1.5 1 1 0 1 1 1 1 AAA domain DEAD PF00270.29 BAD85978.1 - 0.0079 16.0 0.2 0.012 15.4 0.1 1.4 1 1 0 1 1 1 1 DEAD/DEAH box helicase NACHT PF05729.12 BAD85978.1 - 0.008 16.1 0.2 0.053 13.4 0.0 2.2 2 1 0 2 2 2 1 NACHT domain NTPase_1 PF03266.15 BAD85978.1 - 0.0086 16.0 0.5 0.017 15.1 0.5 1.5 1 1 0 1 1 1 1 NTPase AAA_19 PF13245.6 BAD85978.1 - 0.009 16.3 0.0 0.012 16.0 0.0 1.5 1 1 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 BAD85978.1 - 0.015 15.2 0.8 0.023 14.6 0.1 1.7 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_16 PF13191.6 BAD85978.1 - 0.016 15.6 0.2 0.022 15.1 0.2 1.6 1 1 0 1 1 1 0 AAA ATPase domain ABC_tran PF00005.27 BAD85978.1 - 0.019 15.5 0.4 0.055 14.0 0.4 1.5 1 1 0 1 1 1 0 ABC transporter LAGLIDADG_WhiA PF14527.6 BAD85978.1 - 0.027 14.6 0.1 0.077 13.1 0.1 1.7 1 0 0 1 1 1 0 WhiA LAGLIDADG-like domain AAA_33 PF13671.6 BAD85978.1 - 0.028 14.6 0.0 0.036 14.2 0.0 1.4 1 1 0 1 1 1 0 AAA domain Sigma54_activat PF00158.26 BAD85978.1 - 0.036 13.8 0.0 0.083 12.6 0.0 1.6 2 0 0 2 2 1 0 Sigma-54 interaction domain ResIII PF04851.15 BAD85978.1 - 0.04 13.9 0.0 0.053 13.5 0.0 1.3 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit IstB_IS21 PF01695.17 BAD85978.1 - 0.041 13.6 0.0 0.068 12.9 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein Rad51 PF08423.11 BAD85978.1 - 0.071 12.4 0.0 0.13 11.5 0.0 1.3 1 0 0 1 1 1 0 Rad51 TsaE PF02367.17 BAD85978.1 - 0.074 13.1 0.4 0.56 10.2 0.1 2.3 3 0 0 3 3 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_7 PF12775.7 BAD85978.1 - 0.078 12.5 0.1 0.13 11.8 0.1 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region PhoH PF02562.16 BAD85978.1 - 0.079 12.4 0.0 0.12 11.8 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein MEDS PF14417.6 BAD85978.1 - 0.12 12.2 0.0 0.27 11.1 0.0 1.6 1 1 0 1 1 1 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain APS_kinase PF01583.20 BAD85978.1 - 0.12 12.3 0.2 0.37 10.7 0.0 1.8 2 0 0 2 2 2 0 Adenylylsulphate kinase AAA_28 PF13521.6 BAD85978.1 - 0.12 12.6 0.0 0.21 11.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 BAD85978.1 - 0.21 11.6 0.4 2.9 7.9 0.4 2.2 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA PF00004.29 BAD85978.1 - 0.23 11.9 0.7 0.52 10.7 0.7 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.6 BAD85978.1 - 0.36 11.3 3.9 0.18 12.3 0.8 1.9 2 0 0 2 2 2 0 AAA domain DNA_primase_lrg PF04104.14 BAD85979.1 - 6.6e-37 127.4 0.0 1.9e-36 125.8 0.0 1.6 1 1 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit DUF2990 PF11693.8 BAD85979.1 - 0.083 13.1 0.1 0.23 11.6 0.1 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2990) DNA_primase_S PF01896.19 BAD85980.1 - 2.5e-14 53.7 0.0 1.1e-13 51.6 0.0 2.1 2 1 0 2 2 2 1 DNA primase small subunit Acyltransferase PF01553.21 BAD85980.1 - 0.15 11.7 0.0 0.24 11.0 0.0 1.3 1 0 0 1 1 1 0 Acyltransferase Ribosomal_L17 PF01196.19 BAD85980.1 - 0.15 13.0 0.0 0.41 11.6 0.0 1.7 1 0 0 1 1 1 0 Ribosomal protein L17 EamA PF00892.20 BAD85981.1 - 4.3e-34 117.6 35.4 2e-19 70.1 10.1 2.0 2 0 0 2 2 2 2 EamA-like transporter family BatD PF13584.6 BAD85982.1 - 0.0036 16.2 0.1 0.0059 15.5 0.1 1.2 1 0 0 1 1 1 1 Oxygen tolerance DUF3324 PF11797.8 BAD85982.1 - 0.0081 16.1 0.0 0.15 12.0 0.0 2.4 2 0 0 2 2 2 1 Protein of unknown function C-terminal (DUF3324) Malectin PF11721.8 BAD85982.1 - 0.14 12.2 0.0 7.1 6.7 0.0 2.4 1 1 1 2 2 2 0 Malectin domain RseC_MucC PF04246.12 BAD85983.1 - 0.0046 16.9 2.3 0.0046 16.9 2.3 1.4 1 1 0 1 1 1 1 Positive regulator of sigma(E), RseC/MucC Tom6 PF17112.5 BAD85983.1 - 0.0061 16.0 0.0 0.015 14.8 0.0 1.6 1 0 0 1 1 1 1 Mitochondrial import receptor subunit Tom6, fungal DUF4203 PF13886.6 BAD85983.1 - 0.033 13.9 7.1 0.037 13.7 7.1 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4203) Acetyltransf_6 PF13480.7 BAD85983.1 - 0.086 13.0 0.1 0.095 12.9 0.1 1.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain TssN PF17555.2 BAD85983.1 - 0.38 10.1 3.5 0.42 9.9 3.5 1.1 1 0 0 1 1 1 0 Type VI secretion system, TssN DUF2613 PF11021.8 BAD85983.1 - 0.41 10.8 2.7 9.8 6.4 0.5 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2613) Peptidase_U4 PF03419.13 BAD85983.1 - 0.52 9.6 6.2 0.62 9.3 6.2 1.0 1 0 0 1 1 1 0 Sporulation factor SpoIIGA DUF61 PF01886.16 BAD85984.1 - 2.2e-36 124.7 0.3 2.4e-36 124.6 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF61 STAR_dimer PF16544.5 BAD85984.1 - 0.018 14.6 0.0 0.52 9.9 0.0 2.3 2 0 0 2 2 2 0 Homodimerisation region of STAR domain protein Strep_his_triad PF04270.13 BAD85984.1 - 0.082 12.9 0.1 0.2 11.7 0.0 1.7 1 1 0 1 1 1 0 Streptococcal histidine triad protein Gln-synt_C PF00120.24 BAD85985.1 - 6.9e-128 426.5 0.0 8.3e-128 426.2 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 BAD85985.1 - 2.4e-20 72.0 0.0 3.9e-20 71.3 0.0 1.4 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain EamA PF00892.20 BAD85986.1 - 2.5e-52 176.7 39.0 7.3e-27 94.2 12.0 2.0 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.16 BAD85986.1 - 8.7e-14 51.5 13.8 9e-08 31.8 4.3 2.2 1 1 1 2 2 2 2 Triose-phosphate Transporter family TMEM234 PF10639.9 BAD85986.1 - 0.073 13.1 11.5 0.053 13.5 1.0 2.4 2 0 0 2 2 2 0 Putative transmembrane family 234 UAA PF08449.11 BAD85986.1 - 0.12 11.6 23.7 3.1 6.9 18.3 3.1 1 1 1 2 2 2 0 UAA transporter family NAD_synthase PF02540.17 BAD85987.1 - 5.9e-85 284.2 0.0 6.6e-85 284.1 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 BAD85987.1 - 1.5e-06 27.3 0.1 1.1e-05 24.4 0.0 2.3 3 0 0 3 3 3 1 tRNA methyl transferase QueC PF06508.13 BAD85987.1 - 1.5e-06 27.9 0.0 0.00071 19.1 0.0 2.2 2 0 0 2 2 2 2 Queuosine biosynthesis protein QueC ThiI PF02568.14 BAD85987.1 - 0.015 14.9 0.1 0.24 11.0 0.0 2.2 2 0 0 2 2 2 0 Thiamine biosynthesis protein (ThiI) HTH_23 PF13384.6 BAD85987.1 - 0.019 14.8 0.0 2.3 8.1 0.0 2.9 2 1 1 3 3 3 0 Homeodomain-like domain Asn_synthase PF00733.21 BAD85987.1 - 0.028 14.1 0.0 0.037 13.7 0.0 1.2 1 0 0 1 1 1 0 Asparagine synthase Diphthami_syn_2 PF01902.17 BAD85987.1 - 0.11 12.0 0.2 0.35 10.3 0.0 1.8 2 0 0 2 2 2 0 Diphthamide synthase Frizzled PF01534.17 BAD85988.1 - 0.11 11.5 0.0 0.18 10.8 0.0 1.3 1 0 0 1 1 1 0 Frizzled/Smoothened family membrane region DUF3955 PF13127.6 BAD85988.1 - 1.4 8.8 7.1 0.67 9.8 1.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3955) ABC_tran PF00005.27 BAD85989.1 - 9.6e-32 110.4 0.0 1.3e-31 110.0 0.0 1.1 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 BAD85989.1 - 1.6e-20 73.3 0.1 2.8e-20 72.6 0.1 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 BAD85989.1 - 8.4e-05 22.5 0.1 0.062 13.1 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 BAD85989.1 - 0.0013 18.2 0.0 0.0045 16.5 0.0 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 BAD85989.1 - 0.0025 18.1 0.2 0.0086 16.3 0.2 1.9 1 1 0 1 1 1 1 AAA domain PRK PF00485.18 BAD85989.1 - 0.0055 16.5 0.0 0.0096 15.7 0.0 1.4 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family Rad17 PF03215.15 BAD85989.1 - 0.016 15.1 0.0 0.024 14.6 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_29 PF13555.6 BAD85989.1 - 0.034 13.9 0.0 0.062 13.1 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.29 BAD85989.1 - 0.097 13.1 0.0 0.24 11.8 0.0 1.7 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 BAD85989.1 - 0.11 12.4 0.0 0.2 11.6 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_18 PF13238.6 BAD85989.1 - 0.14 12.7 0.0 0.28 11.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 BAD85989.1 - 0.16 12.4 0.0 0.3 11.5 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_13 PF13166.6 BAD85989.1 - 0.16 10.6 0.0 0.35 9.4 0.0 1.4 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.6 BAD85989.1 - 0.21 11.2 0.0 0.3 10.7 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain ABC_tran PF00005.27 BAD85990.1 - 4.5e-28 98.5 0.0 6.2e-28 98.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 BAD85990.1 - 5.8e-21 74.8 0.2 9.6e-21 74.1 0.2 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 BAD85990.1 - 2.9e-06 27.3 0.1 2.6e-05 24.2 0.0 2.0 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 BAD85990.1 - 0.01 15.7 0.1 0.023 14.6 0.0 1.5 2 0 0 2 2 2 0 RsgA GTPase SMC_N PF02463.19 BAD85990.1 - 0.056 12.9 0.3 0.42 10.0 0.0 2.0 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain BPD_transp_1 PF00528.22 BAD85991.1 - 1.8e-28 99.6 13.0 1.8e-28 99.6 13.0 1.9 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 BAD85991.1 - 7e-06 25.9 0.3 7e-06 25.9 0.3 2.9 4 0 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C 2-oxogl_dehyd_N PF16078.5 BAD85991.1 - 0.026 14.1 0.7 0.069 12.8 0.7 1.7 1 0 0 1 1 1 0 2-oxoglutarate dehydrogenase N-terminus Cpta_toxin PF07254.12 BAD85991.1 - 0.03 14.3 2.5 2.7 8.0 0.3 2.4 2 0 0 2 2 2 0 Membrane-bound toxin component of toxin-antitoxin system BPD_transp_1 PF00528.22 BAD85992.1 - 1.6e-37 129.0 19.1 1.6e-37 129.0 19.1 1.6 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF4148 PF13663.6 BAD85992.1 - 0.065 13.4 1.0 0.25 11.5 1.0 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4148) DUF3481 PF11980.8 BAD85992.1 - 6 6.6 5.9 0.5 10.1 0.1 2.2 3 0 0 3 3 3 0 C-terminal domain of neuropilin glycoprotein SBP_bac_5 PF00496.22 BAD85993.1 - 1.2e-25 90.3 20.1 4.8e-25 88.3 20.1 1.9 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Importin_rep_5 PF18816.1 BAD85993.1 - 0.015 15.6 0.2 0.03 14.6 0.2 1.5 1 0 0 1 1 1 0 Importin repeat Leucyl-specific PF14795.6 BAD85993.1 - 0.025 14.6 0.2 0.085 12.9 0.1 1.9 2 0 0 2 2 2 0 Leucine-tRNA synthetase-specific domain DUF5633 PF18656.1 BAD85993.1 - 0.14 12.1 0.1 0.14 12.1 0.1 2.4 3 0 0 3 3 3 0 Family of unknown function (DUF5633) Amidohydro_1 PF01979.20 BAD85994.1 - 6.3e-16 58.6 0.0 5.9e-11 42.3 0.1 2.3 1 1 1 2 2 2 2 Amidohydrolase family TatD_DNase PF01026.21 BAD85994.1 - 0.0042 16.5 0.1 1.3 8.3 0.0 2.2 2 0 0 2 2 2 2 TatD related DNase DHODB_Fe-S_bind PF10418.9 BAD85995.1 - 1.1e-10 41.2 3.3 2.3e-10 40.1 3.3 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NAD_binding_1 PF00175.21 BAD85995.1 - 1.4e-08 35.3 0.0 7.6e-08 33.0 0.0 2.0 1 1 0 1 1 1 1 Oxidoreductase NAD-binding domain NAD_binding_6 PF08030.12 BAD85995.1 - 0.00036 20.7 0.2 0.007 16.5 0.0 2.4 2 1 1 3 3 3 1 Ferric reductase NAD binding domain FAD_binding_6 PF00970.24 BAD85995.1 - 0.00053 20.3 0.0 0.0048 17.2 0.0 2.2 1 1 0 1 1 1 1 Oxidoreductase FAD-binding domain Radical_SAM PF04055.21 BAD85996.1 - 1.8e-16 61.0 4.3 7.7e-13 49.2 0.0 2.7 2 1 1 3 3 3 2 Radical SAM superfamily Fer4_14 PF13394.6 BAD85996.1 - 0.023 14.8 3.9 0.22 11.7 0.8 2.9 3 1 0 3 3 3 0 4Fe-4S single cluster domain Acetyltransf_11 PF13720.6 BAD85996.1 - 0.049 14.1 0.0 0.16 12.4 0.0 1.9 2 0 0 2 2 2 0 Udp N-acetylglucosamine O-acyltransferase; Domain 2 DUF1926 PF09095.11 BAD85998.1 - 6.9e-77 258.8 0.0 1.3e-76 257.9 0.0 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF1926) Glyco_hydro_57 PF03065.15 BAD85998.1 - 5.8e-59 199.9 0.4 3e-58 197.6 0.4 1.9 1 1 0 1 1 1 1 Glycosyl hydrolase family 57 DUF1925 PF09094.11 BAD85998.1 - 2.8e-36 123.7 0.7 6e-36 122.6 0.7 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1925) Glyco_hydro_38N PF01074.22 BAD85998.1 - 2.4e-06 27.1 0.0 1.4e-05 24.6 0.0 2.0 2 0 0 2 2 2 1 Glycosyl hydrolases family 38 N-terminal domain CoA_binding_2 PF13380.6 BAD85998.1 - 0.12 12.9 0.1 0.35 11.4 0.0 1.7 2 0 0 2 2 2 0 CoA binding domain EI24 PF07264.11 BAD85999.1 - 0.00077 19.7 3.9 0.0012 19.1 3.9 1.3 1 0 0 1 1 1 1 Etoposide-induced protein 2.4 (EI24) DUF1269 PF06897.12 BAD85999.1 - 0.073 13.4 0.1 0.073 13.4 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1269) VirB3 PF05101.13 BAD85999.1 - 4.9 7.5 7.7 16 5.8 0.1 3.0 2 1 1 3 3 3 0 Type IV secretory pathway, VirB3-like protein HAD_2 PF13419.6 BAD86000.1 - 3.4e-21 76.1 0.0 4.7e-21 75.7 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 BAD86000.1 - 8.5e-12 45.0 0.0 3.1e-11 43.2 0.0 1.8 2 0 0 2 2 2 1 HAD-hyrolase-like Hydrolase PF00702.26 BAD86000.1 - 1.5e-11 45.0 0.0 3.6e-11 43.7 0.0 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 BAD86000.1 - 2.8e-10 40.9 0.1 4.2e-10 40.3 0.1 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase PGP_phosphatase PF09419.10 BAD86000.1 - 0.014 15.0 0.1 0.014 15.0 0.1 1.8 2 1 0 2 2 2 0 Mitochondrial PGP phosphatase Hydrolase_6 PF13344.6 BAD86000.1 - 0.014 15.5 0.0 0.032 14.3 0.0 1.5 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase NT5C PF06941.12 BAD86000.1 - 0.047 13.6 0.1 0.39 10.6 0.0 2.1 2 0 0 2 2 2 0 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) DUF131 PF01998.17 BAD86001.1 - 6.5e-14 51.3 9.2 6.5e-14 51.3 9.2 2.0 1 1 1 2 2 2 1 Protein of unknown function DUF131 Fig1 PF12351.8 BAD86001.1 - 0.074 13.0 2.9 0.1 12.5 2.9 1.2 1 0 0 1 1 1 0 Ca2+ regulator and membrane fusion protein Fig1 DUF2207 PF09972.9 BAD86001.1 - 4.8 5.8 7.5 5.7 5.6 7.5 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Na_H_Exchanger PF00999.21 BAD86002.1 - 3.2e-55 187.5 43.8 3.8e-55 187.2 43.8 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Pyridoxal_deC PF00282.19 BAD86003.1 - 1.7e-37 129.1 0.0 1.2e-36 126.3 0.0 1.9 1 1 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.19 BAD86003.1 - 8.4e-14 51.3 0.0 2.3e-10 40.0 0.0 2.1 2 0 0 2 2 2 2 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 BAD86003.1 - 3.4e-11 43.1 0.0 7.3e-11 42.0 0.0 1.5 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 BAD86003.1 - 3.2e-06 26.7 0.0 6.5e-06 25.6 0.0 1.4 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.21 BAD86003.1 - 3.9e-06 26.3 0.0 8.1e-05 22.0 0.0 2.0 2 0 0 2 2 2 1 Aminotransferase class I and II SepSecS PF05889.13 BAD86003.1 - 0.0005 18.9 0.0 0.0048 15.6 0.0 2.1 2 0 0 2 2 2 1 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS RHH_1 PF01402.21 BAD86004.1 - 1.7e-10 40.5 0.1 2.8e-10 39.7 0.1 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_8 PF17723.1 BAD86004.1 - 8.1e-08 32.5 0.0 9.2e-08 32.3 0.0 1.2 1 0 0 1 1 1 1 Ribbon-Helix-Helix transcriptional regulator family RHH_3 PF12651.7 BAD86004.1 - 0.0022 17.9 1.5 2.8 8.0 0.1 3.1 3 0 0 3 3 3 1 Ribbon-helix-helix domain ParD_antitoxin PF03693.14 BAD86004.1 - 0.0054 17.1 0.1 0.011 16.1 0.1 1.5 1 1 0 1 1 1 1 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH DUF5388 PF17363.2 BAD86004.1 - 0.034 14.3 0.0 0.048 13.9 0.0 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5388) Z1 PF10593.9 BAD86004.1 - 0.095 12.2 0.0 0.1 12.1 0.0 1.0 1 0 0 1 1 1 0 Z1 domain HicB_lk_antitox PF15919.5 BAD86004.1 - 0.1 12.7 0.0 0.16 12.1 0.0 1.3 1 1 0 1 1 1 0 HicB_like antitoxin of bacterial toxin-antitoxin system PemK_toxin PF02452.17 BAD86005.1 - 7.4e-08 32.8 0.0 8.2e-08 32.6 0.0 1.0 1 0 0 1 1 1 1 PemK-like, MazF-like toxin of type II toxin-antitoxin system Cation_efflux PF01545.21 BAD86006.1 - 5.1e-45 153.7 10.7 5.9e-45 153.4 10.7 1.0 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 BAD86006.1 - 4.3e-23 81.2 2.0 7.4e-23 80.5 2.0 1.4 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter Asp23 PF03780.13 BAD86006.1 - 0.018 15.4 0.1 0.037 14.5 0.1 1.6 1 0 0 1 1 1 0 Asp23 family, cell envelope-related function AsnC_trans_reg PF01037.21 BAD86006.1 - 0.095 12.7 0.3 0.44 10.6 0.2 2.0 2 0 0 2 2 2 0 Lrp/AsnC ligand binding domain PAP2 PF01569.21 BAD86006.1 - 1.4 8.7 8.1 0.79 9.5 0.7 3.3 1 1 2 3 3 3 0 PAP2 superfamily Peptidase_M73 PF12389.8 BAD86007.1 - 1e-06 28.8 0.1 1e-06 28.8 0.1 1.3 1 1 0 1 1 1 1 Camelysin metallo-endopeptidase DUF1344 PF07076.11 BAD86007.1 - 0.065 13.1 0.1 0.14 12.1 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1344) Polysacc_synt PF01943.17 BAD86008.1 - 3.7e-25 88.8 16.3 3.7e-25 88.8 16.3 2.2 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 BAD86008.1 - 7.9e-18 64.9 22.2 7.9e-18 64.9 22.2 4.3 3 1 0 3 3 3 2 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.6 BAD86008.1 - 4.1e-17 62.3 5.8 4.1e-17 62.3 5.8 2.1 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein MatE PF01554.18 BAD86008.1 - 2.1e-11 43.7 31.8 7.6e-11 41.9 10.6 3.7 3 1 0 3 3 3 2 MatE MurJ PF03023.14 BAD86008.1 - 3.5e-06 25.9 24.8 3.5e-06 25.9 24.8 1.9 1 1 1 2 2 2 1 Lipid II flippase MurJ RHH_1 PF01402.21 BAD86008.1 - 0.019 14.9 0.9 0.045 13.7 0.9 1.6 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family Peptidase_M50 PF02163.22 BAD86009.1 - 5.8e-23 81.4 0.0 7.4e-22 77.8 0.0 2.3 1 1 0 1 1 1 1 Peptidase family M50 PDZ_2 PF13180.6 BAD86009.1 - 1.5e-14 54.1 0.0 2.7e-14 53.2 0.0 1.4 1 0 0 1 1 1 1 PDZ domain PDZ_6 PF17820.1 BAD86009.1 - 7.9e-12 44.8 0.0 1.5e-11 44.0 0.0 1.5 1 0 0 1 1 1 1 PDZ domain PDZ PF00595.24 BAD86009.1 - 1.4e-09 38.1 0.2 3.8e-09 36.8 0.2 1.7 1 0 0 1 1 1 1 PDZ domain GRASP55_65 PF04495.14 BAD86009.1 - 0.022 15.1 0.0 0.052 13.9 0.0 1.6 1 0 0 1 1 1 0 GRASP55/65 PDZ-like domain Tricorn_PDZ PF14685.6 BAD86009.1 - 0.059 13.3 0.1 0.13 12.2 0.1 1.6 1 0 0 1 1 1 0 Tricorn protease PDZ domain PDZ_1 PF12812.7 BAD86009.1 - 0.2 11.7 0.0 0.94 9.5 0.0 1.9 2 0 0 2 2 2 0 PDZ-like domain ATP_bind_3 PF01171.20 BAD86010.1 - 6.8e-15 55.3 0.0 1.8e-14 53.9 0.0 1.7 1 1 0 1 1 1 1 PP-loop family tRNA_Me_trans PF03054.16 BAD86010.1 - 0.00011 21.1 0.0 0.00018 20.4 0.0 1.3 1 0 0 1 1 1 1 tRNA methyl transferase PAPS_reduct PF01507.19 BAD86010.1 - 0.00064 19.8 0.0 0.0041 17.2 0.0 2.2 2 0 0 2 2 2 1 Phosphoadenosine phosphosulfate reductase family Asn_synthase PF00733.21 BAD86010.1 - 0.0031 17.2 0.0 0.0049 16.6 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase zn-ribbon_14 PF16503.5 BAD86010.1 - 0.0034 16.9 2.2 0.0034 16.9 2.2 2.8 3 0 0 3 3 3 1 Zinc-ribbon CTU2 PF10288.9 BAD86010.1 - 0.0097 16.1 3.6 0.013 15.7 0.7 2.6 3 1 0 3 3 3 1 Cytoplasmic tRNA 2-thiolation protein 2 C1_2 PF03107.16 BAD86010.1 - 0.022 15.1 0.4 0.022 15.1 0.4 2.9 3 0 0 3 3 3 0 C1 domain NAD_synthase PF02540.17 BAD86010.1 - 0.065 12.3 0.0 0.11 11.5 0.0 1.3 1 0 0 1 1 1 0 NAD synthase SopA PF13981.6 BAD86010.1 - 0.072 13.5 0.0 0.14 12.6 0.0 1.4 1 0 0 1 1 1 0 SopA-like central domain RecR PF02132.15 BAD86010.1 - 0.38 10.4 9.5 0.076 12.6 2.0 2.9 3 0 0 3 3 3 0 RecR protein C5HCH PF17982.1 BAD86010.1 - 0.49 10.6 7.5 0.25 11.5 0.3 2.5 2 0 0 2 2 2 0 NSD Cys-His rich domain zf-ribbon_3 PF13248.6 BAD86010.1 - 4.9 6.7 11.7 9.6 5.8 1.2 3.7 3 0 0 3 3 3 0 zinc-ribbon domain AAA_14 PF13173.6 BAD86011.1 - 4.1e-37 127.1 0.0 7.7e-37 126.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain DUF4143 PF13635.6 BAD86011.1 - 2.5e-07 30.8 0.1 4.8e-07 30.0 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) ATPase_2 PF01637.18 BAD86011.1 - 0.00013 21.9 0.0 0.00028 20.9 0.0 1.5 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea ResIII PF04851.15 BAD86011.1 - 0.037 14.0 0.0 0.065 13.2 0.0 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_22 PF13401.6 BAD86011.1 - 0.052 13.8 0.0 2.9 8.2 0.0 2.5 1 1 0 1 1 1 0 AAA domain MobB PF03205.14 BAD86011.1 - 0.06 13.3 0.0 0.13 12.2 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ATPase PF06745.13 BAD86013.1 - 0.0011 18.4 0.0 0.0016 17.8 0.0 1.3 1 0 0 1 1 1 1 KaiC PAXNEB PF05625.11 BAD86013.1 - 0.12 11.5 0.9 0.27 10.3 0.6 1.6 2 0 0 2 2 2 0 PAXNEB protein HTH_34 PF13601.6 BAD86015.1 - 1.4e-19 70.0 0.0 1.7e-19 69.8 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.20 BAD86015.1 - 5.8e-09 35.7 0.1 2.6e-08 33.6 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 BAD86015.1 - 5.2e-08 32.8 0.2 1.2e-07 31.6 0.1 1.7 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.6 BAD86015.1 - 0.00079 18.9 0.0 0.0021 17.5 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding PadR PF03551.14 BAD86015.1 - 0.0023 17.8 0.0 0.004 17.1 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family MarR_2 PF12802.7 BAD86015.1 - 0.0059 16.5 0.0 0.0083 16.0 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR PF01047.22 BAD86015.1 - 0.0097 15.8 0.0 0.015 15.2 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 BAD86015.1 - 0.01 16.3 0.0 0.016 15.7 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain LexA_DNA_bind PF01726.16 BAD86015.1 - 0.053 13.3 0.0 0.1 12.4 0.0 1.6 1 0 0 1 1 1 0 LexA DNA binding domain HTH_IclR PF09339.10 BAD86015.1 - 0.065 13.0 0.2 0.13 12.1 0.2 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain HxlR PF01638.17 BAD86015.1 - 0.095 12.6 0.1 0.15 11.9 0.1 1.5 1 1 1 2 2 2 0 HxlR-like helix-turn-helix Glyco_hydro_1 PF00232.18 BAD86016.1 - 3.7e-90 302.5 4.9 5e-89 298.8 4.9 1.9 1 1 0 1 1 1 1 Glycosyl hydrolase family 1 Cellulase PF00150.18 BAD86016.1 - 2e-05 24.2 0.0 8.8e-05 22.1 0.0 1.8 2 0 0 2 2 2 1 Cellulase (glycosyl hydrolase family 5) Glyco_hydro_10 PF00331.20 BAD86016.1 - 0.14 11.3 0.0 0.41 9.8 0.0 1.7 2 0 0 2 2 2 0 Glycosyl hydrolase family 10 GalP_UDP_transf PF01087.22 BAD86017.1 - 1.2e-25 91.0 0.0 1.4e-24 87.5 0.0 2.5 2 1 0 2 2 2 1 Galactose-1-phosphate uridyl transferase, N-terminal domain GalP_UDP_tr_C PF02744.17 BAD86017.1 - 2.1e-19 69.9 0.0 3.2e-19 69.2 0.0 1.2 1 0 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, C-terminal domain DUF4921 PF16268.5 BAD86017.1 - 1.5e-06 27.3 0.0 2.7e-06 26.5 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4921) HIT PF01230.23 BAD86017.1 - 3.2e-06 27.8 0.0 0.0031 18.2 0.0 2.3 2 0 0 2 2 2 2 HIT domain DcpS_C PF11969.8 BAD86017.1 - 0.0014 19.1 0.0 0.0037 17.7 0.0 1.6 2 0 0 2 2 2 1 Scavenger mRNA decapping enzyme C-term binding DUF4931 PF16285.5 BAD86017.1 - 0.0036 16.7 0.1 0.0099 15.2 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF4931) MFS_1 PF07690.16 BAD86018.1 - 8e-57 192.8 34.1 8.2e-53 179.6 23.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 BAD86018.1 - 1.3e-12 47.4 25.0 2e-10 40.1 24.6 3.0 1 1 0 1 1 1 1 Sugar (and other) transporter MFS_2 PF13347.6 BAD86018.1 - 1e-08 34.2 24.7 2.6e-05 23.0 7.1 2.2 2 0 0 2 2 2 2 MFS/sugar transport protein MFS_1_like PF12832.7 BAD86018.1 - 6.9e-07 28.5 11.2 0.00021 20.3 4.6 4.3 2 2 1 4 4 4 3 MFS_1 like family ATG22 PF11700.8 BAD86018.1 - 4.8e-05 22.2 17.0 0.029 13.0 11.1 3.1 2 1 1 3 3 3 2 Vacuole effluxer Atg22 like MFS_3 PF05977.13 BAD86018.1 - 0.00082 17.9 4.1 0.02 13.3 0.0 2.3 2 0 0 2 2 2 2 Transmembrane secretion effector OATP PF03137.20 BAD86018.1 - 0.026 12.8 22.1 0.22 9.8 0.8 3.8 2 1 1 3 3 3 0 Organic Anion Transporter Polypeptide (OATP) family BIV_Env PF05858.12 BAD86018.1 - 0.085 11.0 0.9 0.13 10.4 0.9 1.2 1 0 0 1 1 1 0 Bovine immunodeficiency virus surface protein (SU) E1-E2_ATPase PF00122.20 BAD86018.1 - 0.99 8.9 5.0 1.2 8.6 0.3 2.8 3 0 0 3 3 3 0 E1-E2 ATPase Glyco_hydro_57 PF03065.15 BAD86019.1 - 3.4e-46 158.0 0.0 5.4e-46 157.3 0.0 1.3 1 1 0 1 1 1 1 Glycosyl hydrolase family 57 Polysacc_deac_1 PF01522.21 BAD86019.1 - 0.0072 16.2 0.0 0.01 15.7 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide deacetylase GalKase_gal_bdg PF10509.9 BAD86020.1 - 1.2e-16 60.0 0.3 5.3e-16 57.9 0.1 2.2 2 0 0 2 2 2 1 Galactokinase galactose-binding signature GHMP_kinases_C PF08544.13 BAD86020.1 - 1.1e-14 54.6 0.3 2.1e-14 53.7 0.3 1.5 1 0 0 1 1 1 1 GHMP kinases C terminal GHMP_kinases_N PF00288.26 BAD86020.1 - 4.8e-14 52.3 4.3 6.9e-14 51.8 0.2 2.4 2 0 0 2 2 2 1 GHMP kinases N terminal domain EFhand_Ca_insen PF08726.10 BAD86020.1 - 0.055 13.6 0.1 0.24 11.5 0.0 2.0 2 0 0 2 2 2 0 Ca2+ insensitive EF hand DUF2238 PF09997.9 BAD86021.1 - 0.0045 16.8 0.3 0.0082 15.9 0.3 1.4 1 0 0 1 1 1 1 Predicted membrane protein (DUF2238) Oxidored_q5_N PF01059.17 BAD86021.1 - 0.012 15.7 1.0 0.032 14.3 0.2 2.0 2 0 0 2 2 2 0 NADH-ubiquinone oxidoreductase chain 4, amino terminus VanZ PF04892.12 BAD86021.1 - 0.031 14.9 5.8 2.1 9.0 5.8 3.0 1 1 0 1 1 1 0 VanZ like family DUF460 PF04312.13 BAD86022.1 - 2.6e-50 169.8 0.5 6.3e-50 168.5 0.1 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF460) acVLRF1 PF18859.1 BAD86022.1 - 4.5e-06 27.0 0.8 4.5e-06 27.0 0.8 2.8 3 1 0 3 3 3 1 Actinobacteria/chloroflexi VLRF1 release factor GFO_IDH_MocA PF01408.22 BAD86022.1 - 0.0019 19.0 0.0 0.0055 17.5 0.0 1.8 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Hydrolase PF00702.26 BAD86022.1 - 0.052 13.8 5.0 9.5 6.4 0.1 3.3 2 1 0 3 3 3 0 haloacid dehalogenase-like hydrolase DUF1664 PF07889.12 BAD86022.1 - 0.086 12.9 5.3 0.16 12.0 3.7 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) TMPIT PF07851.13 BAD86022.1 - 0.23 10.7 1.4 0.42 9.8 1.4 1.3 1 0 0 1 1 1 0 TMPIT-like protein USP8_interact PF08941.10 BAD86022.1 - 0.24 11.2 1.4 0.54 10.1 1.4 1.6 1 0 0 1 1 1 0 USP8 interacting Fib_alpha PF08702.10 BAD86022.1 - 0.33 11.1 11.0 0.16 12.1 2.8 2.6 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family V_ATPase_I PF01496.19 BAD86022.1 - 0.77 7.6 8.4 1.3 6.9 8.4 1.3 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family BLOC1_2 PF10046.9 BAD86022.1 - 0.93 9.8 6.6 5.2 7.4 0.7 2.7 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 XLF PF09302.11 BAD86022.1 - 2.5 8.2 5.7 2.4 8.3 0.7 2.5 2 0 0 2 2 2 0 XLF-Cernunnos, XRcc4-like factor, NHEJ component Shugoshin_N PF07558.11 BAD86022.1 - 8.7 6.3 12.1 0.79 9.6 6.6 2.2 2 0 0 2 2 2 0 Shugoshin N-terminal coiled-coil region NYD-SP28_assoc PF14775.6 BAD86022.1 - 9.9 6.3 10.3 0.31 11.2 2.4 2.6 2 0 0 2 2 2 0 Sperm tail C-terminal domain Peptidase_C15 PF01470.17 BAD86024.1 - 1.2e-74 250.9 0.1 1.3e-74 250.7 0.1 1.0 1 0 0 1 1 1 1 Pyroglutamyl peptidase FAD_binding_3 PF01494.19 BAD86025.1 - 1.9e-19 70.1 0.7 7.7e-17 61.6 0.7 2.5 1 1 0 1 1 1 1 FAD binding domain Trp_halogenase PF04820.14 BAD86025.1 - 1.1e-06 27.8 0.9 0.11 11.3 0.0 3.1 2 1 1 3 3 3 3 Tryptophan halogenase DAO PF01266.24 BAD86025.1 - 1.9e-06 27.7 1.0 0.0073 15.9 0.2 2.3 1 1 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 BAD86025.1 - 3.9e-06 27.0 2.8 0.00011 22.3 0.1 2.9 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.12 BAD86025.1 - 2.1e-05 23.8 0.0 0.002 17.3 0.0 2.1 2 0 0 2 2 2 1 Lycopene cyclase protein Thi4 PF01946.17 BAD86025.1 - 6e-05 22.4 0.1 0.00013 21.3 0.1 1.5 1 0 0 1 1 1 1 Thi4 family HI0933_like PF03486.14 BAD86025.1 - 0.008 14.9 0.0 0.015 14.0 0.0 1.5 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox_2 PF07992.14 BAD86025.1 - 0.014 14.6 0.8 0.13 11.5 0.1 2.0 1 1 1 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Sacchrp_dh_NADP PF03435.18 BAD86025.1 - 0.024 14.9 0.1 0.11 12.8 0.1 2.0 2 0 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain FAD_oxidored PF12831.7 BAD86025.1 - 0.026 13.9 0.1 0.037 13.4 0.1 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase DUF1471 PF07338.13 BAD86025.1 - 0.15 12.1 0.0 0.45 10.5 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF1471) TrkA_N PF02254.18 BAD86025.1 - 0.17 12.2 0.0 0.5 10.6 0.0 1.8 1 0 0 1 1 1 0 TrkA-N domain ASCH PF04266.14 BAD86026.1 - 1e-17 64.6 1.9 1.3e-17 64.3 1.9 1.0 1 0 0 1 1 1 1 ASCH domain S4_2 PF13275.6 BAD86026.1 - 0.0049 16.6 0.2 0.0084 15.9 0.2 1.3 1 0 0 1 1 1 1 S4 domain SQHop_cyclase_C PF13243.6 BAD86027.1 - 9.9e-06 24.9 0.5 2.1e-05 23.8 0.1 1.8 2 0 0 2 2 2 1 Squalene-hopene cyclase C-terminal domain Prenyltrans PF00432.21 BAD86027.1 - 0.68 9.7 0.0 0.68 9.7 0.0 4.3 5 0 0 5 5 5 0 Prenyltransferase and squalene oxidase repeat Y_Y_Y PF07495.13 BAD86028.1 - 3.9e-27 94.0 15.1 0.00087 19.2 0.2 6.6 6 0 0 6 6 6 6 Y_Y_Y domain CarboxypepD_reg PF13620.6 BAD86028.1 - 2.4e-06 27.7 3.1 1.6 9.0 0.0 6.2 6 0 0 6 6 6 1 Carboxypeptidase regulatory-like domain DUF5122 PF17164.4 BAD86028.1 - 9.7e-06 25.8 43.5 0.13 12.6 2.0 7.7 7 0 0 7 7 7 4 Domain of unknown function (DUF5122) beta-propeller RHS PF03527.14 BAD86028.1 - 3.3e-05 23.5 7.7 24 4.8 0.0 6.8 5 0 0 5 5 5 0 RHS protein BetaGal_dom3 PF13363.6 BAD86028.1 - 0.015 14.9 14.0 2.5 7.7 0.1 6.2 6 1 1 7 7 7 0 Beta-galactosidase, domain 3 DUF2807 PF10988.8 BAD86028.1 - 0.048 13.5 0.5 0.26 11.1 0.1 2.5 2 0 0 2 2 2 0 Putative auto-transporter adhesin, head GIN domain Big_7 PF17957.1 BAD86028.1 - 0.06 14.1 33.7 2 9.2 1.4 7.8 8 0 0 8 8 8 0 Bacterial Ig domain DUF3389 PF11869.8 BAD86028.1 - 0.066 13.4 0.2 15 5.8 0.0 3.4 1 1 1 2 2 2 0 Protein of unknown function (DUF3389) DUF4822 PF16103.5 BAD86028.1 - 0.11 12.8 1.0 64 3.9 0.0 4.4 5 0 0 5 5 5 0 Domain of unknown function (DUF4822) RcnB PF11776.8 BAD86028.1 - 0.15 12.1 1.3 4.7 7.4 0.0 3.8 3 0 0 3 3 3 0 Nickel/cobalt transporter regulator HepII_C PF18675.1 BAD86028.1 - 0.38 10.9 7.2 0.52 10.5 0.1 4.5 6 0 0 6 6 6 0 Heparinase II C-terminal domain Kelch_2 PF07646.15 BAD86028.1 - 0.57 10.3 4.3 2.5 8.2 0.1 3.9 4 0 0 4 4 4 0 Kelch motif NHL PF01436.21 BAD86028.1 - 2.6 8.2 24.1 24 5.2 0.3 7.6 7 0 0 7 7 7 0 NHL repeat Peptidase_M32 PF02074.15 BAD86029.1 - 2.5e-163 544.4 0.0 2.8e-163 544.2 0.0 1.0 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase Peptidase_M3 PF01432.20 BAD86029.1 - 0.013 14.7 1.5 3.4 6.8 0.2 2.9 3 0 0 3 3 3 0 Peptidase family M3 Resolvase PF00239.21 BAD86030.1 - 2.8e-25 89.1 0.3 3.7e-25 88.7 0.3 1.1 1 0 0 1 1 1 1 Resolvase, N terminal domain HTH_17 PF12728.7 BAD86030.1 - 3.8e-14 52.6 0.4 7.7e-14 51.6 0.4 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_8 PF02954.19 BAD86030.1 - 0.021 14.6 0.1 0.056 13.2 0.1 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family OrfB_Zn_ribbon PF07282.11 BAD86031.1 - 1.9e-26 91.7 0.0 5e-26 90.4 0.0 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 BAD86031.1 - 7.7e-07 29.4 0.4 7.7e-07 29.4 0.4 2.2 2 1 0 2 2 2 1 Probable transposase Prok-RING_1 PF14446.6 BAD86031.1 - 0.007 16.3 0.3 0.012 15.5 0.3 1.3 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 DZR PF12773.7 BAD86031.1 - 0.007 16.4 0.5 0.012 15.6 0.5 1.3 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 BAD86031.1 - 0.01 15.5 3.1 0.031 14.0 3.1 1.8 1 1 0 1 1 1 0 zinc-ribbon domain RsgI_N PF12791.7 BAD86031.1 - 0.026 14.4 0.2 0.91 9.5 0.1 3.0 3 0 0 3 3 3 0 Anti-sigma factor N-terminus HypA PF01155.19 BAD86031.1 - 0.032 14.2 0.0 0.051 13.6 0.0 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-Mss51 PF13824.6 BAD86031.1 - 0.035 14.2 1.4 0.077 13.1 1.4 1.6 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 C1_2 PF03107.16 BAD86031.1 - 0.042 14.2 0.1 0.081 13.3 0.1 1.4 1 0 0 1 1 1 0 C1 domain DnaB_2 PF07261.11 BAD86031.1 - 0.13 12.0 0.2 1.1 9.1 0.1 2.5 3 0 0 3 3 3 0 Replication initiation and membrane attachment C1_1 PF00130.22 BAD86031.1 - 0.14 12.1 0.1 0.25 11.2 0.1 1.4 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Rad50_zn_hook PF04423.14 BAD86031.1 - 0.24 11.2 0.2 0.24 11.2 0.2 3.5 2 1 1 3 3 3 0 Rad50 zinc hook motif PhoU PF01895.19 BAD86031.1 - 0.4 11.2 1.9 1.2 9.6 1.2 2.1 3 0 0 3 3 3 0 PhoU domain DNA_ligase_ZBD PF03119.16 BAD86031.1 - 1.1 9.4 3.7 21 5.3 1.1 2.5 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-ribbon_3 PF13248.6 BAD86031.1 - 1.8 8.1 4.2 8.1 6.0 4.2 1.9 1 1 0 1 1 1 0 zinc-ribbon domain PfkB PF00294.24 BAD86032.1 - 8.3e-41 140.2 0.0 1.2e-40 139.7 0.0 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 BAD86032.1 - 2.5e-06 27.1 0.0 4e-06 26.4 0.0 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Mac PF12464.8 BAD86032.1 - 0.13 12.5 0.0 0.3 11.4 0.0 1.5 1 0 0 1 1 1 0 Maltose acetyltransferase DUF58 PF01882.18 BAD86034.1 - 3.2e-23 81.8 0.0 6.4e-23 80.8 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function DUF58 AAA_3 PF07726.11 BAD86035.1 - 1.5e-67 225.4 0.1 2.5e-67 224.7 0.1 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 BAD86035.1 - 2.3e-21 75.4 0.2 4.3e-21 74.5 0.2 1.5 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 BAD86035.1 - 1.2e-10 41.5 0.0 2.7e-10 40.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 BAD86035.1 - 0.00022 21.6 0.0 0.00036 20.9 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 BAD86035.1 - 0.00034 20.4 0.0 0.0021 17.8 0.0 2.0 2 0 0 2 2 2 1 Sigma-54 interaction domain RuvB_N PF05496.12 BAD86035.1 - 0.011 15.5 0.3 0.13 12.0 0.0 2.6 2 1 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain MCM_lid PF17855.1 BAD86035.1 - 0.046 14.1 0.0 0.097 13.1 0.0 1.5 1 1 0 1 1 1 0 MCM AAA-lid domain MCM PF00493.23 BAD86035.1 - 0.056 12.5 0.0 0.15 11.2 0.0 1.8 1 1 0 1 1 1 0 MCM P-loop domain AAA_lid_8 PF17868.1 BAD86035.1 - 0.11 12.4 0.7 0.52 10.2 0.1 2.3 2 1 0 2 2 2 0 AAA lid domain DUF4129 PF13559.6 BAD86037.1 - 4.6e-07 30.0 0.0 8.9e-07 29.1 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4129) DHHC PF01529.20 BAD86037.1 - 0.89 9.7 4.3 32 4.6 0.0 2.6 2 1 0 2 2 2 0 DHHC palmitoyltransferase DUF2207 PF09972.9 BAD86037.1 - 3.8 6.2 5.6 5.9 5.5 0.3 2.2 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF2118 PF09891.9 BAD86038.1 - 9.7e-61 204.1 0.9 1.1e-60 204.0 0.9 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2118) CofC PF01983.16 BAD86038.1 - 0.041 13.1 0.0 0.053 12.7 0.0 1.2 1 0 0 1 1 1 0 Guanylyl transferase CofC like DUF3954 PF13128.6 BAD86038.1 - 0.07 13.0 0.1 11 5.9 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3954) FKBP_C PF00254.28 BAD86039.1 - 2.6e-23 82.1 0.0 4.3e-23 81.4 0.0 1.4 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase T2SSF PF00482.23 BAD86040.1 - 2.5e-18 66.2 1.6 2.5e-18 66.2 1.6 3.0 3 1 1 4 4 4 1 Type II secretion system (T2SS), protein F Phage_holin_3_3 PF16083.5 BAD86040.1 - 0.057 13.5 10.1 1 9.5 0.1 3.0 2 0 0 2 2 2 0 LydA holin phage, holin superfamily III DUF373 PF04123.13 BAD86040.1 - 5.8 6.3 13.3 1.6 8.1 1.3 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF373) T2SSF PF00482.23 BAD86041.1 - 4e-23 81.7 2.3 4e-23 81.7 2.3 3.8 4 0 0 4 4 4 1 Type II secretion system (T2SS), protein F Spore_III_AB PF09548.10 BAD86041.1 - 0.00065 19.9 1.9 0.017 15.2 0.0 2.6 2 1 0 2 2 2 1 Stage III sporulation protein AB (spore_III_AB) PEX11 PF05648.14 BAD86041.1 - 0.36 10.3 2.2 1.1 8.6 0.0 2.2 2 0 0 2 2 2 0 Peroxisomal biogenesis factor 11 (PEX11) DUF3561 PF12084.8 BAD86041.1 - 1.1 9.4 14.8 0.12 12.4 7.8 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3561) RseC_MucC PF04246.12 BAD86041.1 - 1.9 8.5 11.9 0.74 9.8 0.9 2.3 2 0 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC T2SSE PF00437.20 BAD86042.1 - 2.6e-57 194.0 0.0 8.5e-54 182.4 0.0 2.4 2 0 0 2 2 2 2 Type II/IV secretion system protein Intein_splicing PF14890.6 BAD86042.1 - 5.8e-23 81.3 0.0 1.7e-22 79.8 0.0 1.8 1 1 0 1 1 1 1 Intein splicing domain LAGLIDADG_3 PF14528.6 BAD86042.1 - 6.6e-18 64.8 0.0 1.3e-15 57.4 0.0 3.0 2 0 0 2 2 2 1 LAGLIDADG-like domain Hom_end PF05204.14 BAD86042.1 - 7e-06 26.2 0.0 0.00057 20.0 0.0 2.5 2 0 0 2 2 2 1 Homing endonuclease LAGLIDADG_WhiA PF14527.6 BAD86042.1 - 0.00025 21.0 0.0 0.48 10.5 0.0 2.6 2 0 0 2 2 2 2 WhiA LAGLIDADG-like domain FtsK_SpoIIIE PF01580.18 BAD86042.1 - 0.00029 20.3 0.1 0.00062 19.2 0.1 1.5 1 0 0 1 1 1 1 FtsK/SpoIIIE family HTH_31 PF13560.6 BAD86042.1 - 0.0055 17.0 0.4 0.025 14.9 0.2 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain Zeta_toxin PF06414.12 BAD86042.1 - 0.016 14.5 0.1 0.039 13.2 0.1 1.6 1 0 0 1 1 1 0 Zeta toxin HTH_19 PF12844.7 BAD86042.1 - 0.081 13.0 2.7 0.18 11.8 0.3 2.6 2 0 0 2 2 2 0 Helix-turn-helix domain AAA_29 PF13555.6 BAD86042.1 - 0.089 12.5 0.1 0.26 11.1 0.1 1.8 1 0 0 1 1 1 0 P-loop containing region of AAA domain NSP2_assoc PF14758.6 BAD86042.1 - 0.092 13.1 0.2 0.18 12.1 0.2 1.4 1 0 0 1 1 1 0 Non-essential region of nsp2 of arterivirus polyprotein AAA_19 PF13245.6 BAD86042.1 - 0.24 11.7 0.6 0.57 10.5 0.6 1.6 1 0 0 1 1 1 0 AAA domain DUF515 PF04415.12 BAD86044.1 - 5.8e-215 713.9 21.6 6.6e-215 713.7 21.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF515) SPX PF03105.19 BAD86044.1 - 0.022 14.7 6.6 0.26 11.2 6.6 2.1 1 1 0 1 1 1 0 SPX domain GA-like PF17573.2 BAD86044.1 - 0.035 14.0 1.0 2.3 8.2 0.0 3.4 4 0 0 4 4 4 0 GA-like domain XRN1_D2_D3 PF18334.1 BAD86044.1 - 0.036 14.3 0.5 0.036 14.3 0.5 2.3 2 0 0 2 2 2 0 Exoribonuclease Xrn1 D2/D3 domain GET2 PF08690.10 BAD86044.1 - 0.64 9.6 14.7 4.9 6.7 5.7 3.8 3 1 1 4 4 4 0 GET complex subunit GET2 Insulin_TMD PF17870.1 BAD86044.1 - 1.6 8.9 4.7 0.81 9.8 0.4 2.3 2 0 0 2 2 2 0 Insulin receptor trans-membrane segment Shisa PF13908.6 BAD86044.1 - 2.9 8.1 0.0 2.9 8.1 0.0 2.7 3 1 0 3 3 3 0 Wnt and FGF inhibitory regulator DUF1542 PF07564.11 BAD86044.1 - 5 7.3 12.1 2.9 8.1 3.9 3.2 3 1 0 3 3 3 0 Domain of Unknown Function (DUF1542) GA PF01468.17 BAD86044.1 - 7.7 6.9 10.3 1.1 9.6 0.2 3.5 4 0 0 4 4 4 0 GA module MMR_HSR1 PF01926.23 BAD86046.1 - 2.3e-17 63.1 0.3 4.5e-13 49.3 0.0 2.5 2 0 0 2 2 2 2 50S ribosome-binding GTPase FeoB_N PF02421.18 BAD86046.1 - 3.9e-13 49.2 0.1 3.1e-06 26.8 0.0 2.4 2 0 0 2 2 2 2 Ferrous iron transport protein B RsgA_GTPase PF03193.16 BAD86046.1 - 8.2e-10 38.8 0.0 2.1e-09 37.5 0.0 1.6 1 1 0 1 1 1 1 RsgA GTPase Arf PF00025.21 BAD86046.1 - 8.8e-07 28.5 1.4 0.0055 16.2 0.1 2.2 2 0 0 2 2 2 2 ADP-ribosylation factor family GTP_EFTU PF00009.27 BAD86046.1 - 1.6e-06 27.8 0.3 0.00016 21.3 0.0 3.4 3 1 0 3 3 3 1 Elongation factor Tu GTP binding domain Dynamin_N PF00350.23 BAD86046.1 - 9.5e-06 25.8 0.1 0.44 10.6 0.0 3.1 2 1 1 3 3 3 2 Dynamin family MMR_HSR1_Xtn PF16897.5 BAD86046.1 - 0.0055 16.7 0.0 0.011 15.8 0.0 1.5 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain NTPase_1 PF03266.15 BAD86046.1 - 0.035 14.0 1.7 1.8 8.4 0.2 2.7 2 1 0 2 2 2 0 NTPase cobW PF02492.19 BAD86046.1 - 0.075 12.6 0.6 0.47 10.0 0.0 2.1 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_24 PF13479.6 BAD86046.1 - 0.12 12.1 0.2 0.27 10.9 0.2 1.6 1 0 0 1 1 1 0 AAA domain Roc PF08477.13 BAD86046.1 - 0.12 12.6 0.3 0.96 9.7 0.1 2.3 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase FtsX PF02687.21 BAD86047.1 - 3.9e-09 36.9 1.5 3.9e-09 36.9 1.5 4.4 6 0 0 6 6 6 2 FtsX-like permease family ABC_tran PF00005.27 BAD86048.1 - 4.3e-30 105.0 0.0 5.9e-30 104.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 BAD86048.1 - 2e-07 31.1 0.9 0.017 15.0 1.4 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 BAD86048.1 - 5.5e-07 29.3 0.2 0.00017 21.1 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 BAD86048.1 - 0.0013 18.7 0.0 0.0021 18.0 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_28 PF13521.6 BAD86048.1 - 0.0021 18.3 0.0 0.0067 16.7 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 BAD86048.1 - 0.0021 17.7 0.1 0.0041 16.8 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 BAD86048.1 - 0.0089 16.5 1.6 0.0089 16.5 1.6 1.8 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.6 BAD86048.1 - 0.015 15.1 0.0 1.4 8.5 0.5 2.1 1 1 1 2 2 2 0 AAA ATPase domain AAA_22 PF13401.6 BAD86048.1 - 0.016 15.5 0.3 0.063 13.6 0.3 2.0 1 1 0 1 1 1 0 AAA domain T2SSE PF00437.20 BAD86048.1 - 0.017 14.2 0.2 0.026 13.6 0.2 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein Rad17 PF03215.15 BAD86048.1 - 0.019 14.9 0.0 0.025 14.5 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain PIF1 PF05970.14 BAD86048.1 - 0.021 14.0 0.2 1.6 7.8 0.0 2.1 2 0 0 2 2 2 0 PIF1-like helicase AAA_30 PF13604.6 BAD86048.1 - 0.025 14.3 0.0 0.044 13.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 BAD86048.1 - 0.026 15.1 1.9 0.13 12.9 0.5 2.4 2 2 1 3 3 3 0 AAA domain cobW PF02492.19 BAD86048.1 - 0.028 14.0 0.1 0.063 12.9 0.0 1.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Mg_chelatase PF01078.21 BAD86048.1 - 0.033 13.6 0.0 0.056 12.8 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI FtsK_SpoIIIE PF01580.18 BAD86048.1 - 0.038 13.3 0.2 0.11 11.8 0.1 1.7 2 0 0 2 2 2 0 FtsK/SpoIIIE family Zeta_toxin PF06414.12 BAD86048.1 - 0.042 13.1 0.0 0.071 12.4 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_16 PF13191.6 BAD86048.1 - 0.046 14.1 0.2 0.073 13.5 0.1 1.7 2 1 0 2 2 1 0 AAA ATPase domain NACHT PF05729.12 BAD86048.1 - 0.06 13.3 0.0 0.15 12.0 0.0 1.7 2 0 0 2 2 2 0 NACHT domain AAA_14 PF13173.6 BAD86048.1 - 0.084 12.9 0.0 1.7 8.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 BAD86048.1 - 0.14 11.7 0.0 0.4 10.2 0.0 1.6 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 BAD86048.1 - 0.17 12.0 0.6 0.34 11.0 0.5 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase BPD_transp_1 PF00528.22 BAD86049.1 - 9.7e-09 35.2 20.5 9.7e-09 35.2 20.5 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 BAD86050.1 - 8.2e-22 77.8 16.6 8.2e-22 77.8 16.6 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Ycf70 PF17382.2 BAD86050.1 - 0.2 12.1 0.1 0.2 12.1 0.1 3.4 4 0 0 4 4 4 0 Uncharacterized Ycf70-like OppC_N PF12911.7 BAD86050.1 - 0.72 9.9 0.1 0.72 9.9 0.1 3.9 5 0 0 5 5 5 0 N-terminal TM domain of oligopeptide transport permease C PqqD PF05402.12 BAD86051.1 - 0.044 14.1 0.0 0.054 13.8 0.0 1.2 1 0 0 1 1 1 0 Coenzyme PQQ synthesis protein D (PqqD) UPF0020 PF01170.18 BAD86052.1 - 1.1e-39 136.2 0.0 7.9e-39 133.4 0.0 2.0 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 THUMP PF02926.17 BAD86052.1 - 5e-28 98.0 1.3 8.1e-28 97.3 1.3 1.4 1 0 0 1 1 1 1 THUMP domain Methyltransf_31 PF13847.6 BAD86052.1 - 9e-11 41.8 0.0 1.6e-10 41.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 BAD86052.1 - 3.9e-08 33.9 0.0 9.1e-08 32.7 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 BAD86052.1 - 8.5e-07 28.7 0.0 1.3e-06 28.1 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase N6_N4_Mtase PF01555.18 BAD86052.1 - 2.5e-06 27.4 0.0 4.8e-06 26.4 0.0 1.4 1 0 0 1 1 1 1 DNA methylase Methyltransf_11 PF08241.12 BAD86052.1 - 3.1e-06 27.8 0.0 9.7e-06 26.2 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain N6_Mtase PF02384.16 BAD86052.1 - 8.5e-05 22.0 0.0 0.00013 21.3 0.0 1.2 1 0 0 1 1 1 1 N-6 DNA Methylase Ubie_methyltran PF01209.18 BAD86052.1 - 0.0019 17.6 0.0 0.0028 17.0 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.14 BAD86052.1 - 0.0019 17.8 0.0 0.003 17.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_4 PF02390.17 BAD86052.1 - 0.002 17.6 0.0 0.0052 16.3 0.0 1.7 1 1 0 1 1 1 1 Putative methyltransferase Cons_hypoth95 PF03602.15 BAD86052.1 - 0.0071 16.0 0.0 0.012 15.2 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 AviRa PF11599.8 BAD86052.1 - 0.03 13.8 0.0 0.44 10.0 0.0 2.1 1 1 1 2 2 2 0 RRNA methyltransferase AviRa Methyltransf_3 PF01596.17 BAD86052.1 - 0.12 11.5 0.0 0.19 10.8 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase PBP_like_2 PF12849.7 BAD86053.1 - 3.4e-55 187.7 1.5 4e-55 187.5 1.5 1.0 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_1 PF01547.25 BAD86053.1 - 9.7e-19 68.4 6.1 1.2e-18 68.1 6.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.7 BAD86053.1 - 2e-06 27.1 0.0 1.8e-05 23.9 0.0 2.2 1 1 0 1 1 1 1 PBP superfamily domain HEPN_AbiV PF18728.1 BAD86053.1 - 0.18 12.0 0.0 0.3 11.2 0.0 1.3 1 0 0 1 1 1 0 AbiV AP_endonuc_2 PF01261.24 BAD86054.1 - 2.9e-24 85.7 0.1 3.8e-24 85.3 0.1 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel BPD_transp_1 PF00528.22 BAD86055.1 - 1.7e-11 44.2 19.2 1.7e-11 44.2 19.2 2.5 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 BAD86056.1 - 1.2e-14 54.5 14.6 1.2e-14 54.5 14.6 2.3 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 BAD86057.1 - 9.5e-33 113.6 0.0 1.3e-32 113.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 BAD86057.1 - 1.9e-08 34.5 0.0 4.5e-05 23.4 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 BAD86057.1 - 6.6e-05 22.5 0.0 0.0014 18.1 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 BAD86057.1 - 0.00014 22.1 0.0 0.00033 20.9 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 BAD86057.1 - 0.00054 19.7 0.0 0.001 18.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 BAD86057.1 - 0.0013 19.1 0.0 0.0021 18.5 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 BAD86057.1 - 0.0032 17.4 0.0 0.0067 16.3 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_23 PF13476.6 BAD86057.1 - 0.0037 17.8 0.0 0.0062 17.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain PRK PF00485.18 BAD86057.1 - 0.01 15.6 0.0 0.016 14.9 0.0 1.3 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family AAA_24 PF13479.6 BAD86057.1 - 0.011 15.4 0.0 0.024 14.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 BAD86057.1 - 0.013 15.4 0.0 0.023 14.6 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_15 PF13175.6 BAD86057.1 - 0.019 14.7 0.0 0.55 9.9 0.0 2.1 1 1 0 2 2 2 0 AAA ATPase domain AAA_30 PF13604.6 BAD86057.1 - 0.02 14.6 0.0 0.09 12.5 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 BAD86057.1 - 0.025 14.2 0.1 0.13 11.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 BAD86057.1 - 0.03 14.7 0.0 3 8.3 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 BAD86057.1 - 0.042 13.9 0.0 0.081 12.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) RNA_helicase PF00910.22 BAD86057.1 - 0.097 13.1 0.0 0.27 11.6 0.0 1.8 2 0 0 2 2 2 0 RNA helicase PhoU PF01895.19 BAD86058.1 - 0.0011 19.4 0.2 0.0024 18.3 0.2 1.7 1 0 0 1 1 1 1 PhoU domain PhoU PF01895.19 BAD86059.1 - 4.3e-20 72.0 8.4 4.4e-11 43.1 0.9 2.2 2 0 0 2 2 2 2 PhoU domain Shikimate_dh_N PF08501.11 BAD86059.1 - 0.021 15.1 0.0 0.7 10.2 0.0 2.7 2 1 0 2 2 2 0 Shikimate dehydrogenase substrate binding domain Dpoe2NT PF12213.8 BAD86059.1 - 0.092 13.1 0.3 2.2 8.6 0.1 2.4 2 0 0 2 2 2 0 DNA polymerases epsilon N terminal DUF2206 PF09971.9 BAD86060.1 - 0.0055 15.5 0.4 0.35 9.6 0.3 2.0 1 1 1 2 2 2 2 Predicted membrane protein (DUF2206) FAA_hydrolase PF01557.18 BAD86061.1 - 9.9e-71 237.9 0.0 1.1e-70 237.7 0.0 1.0 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family Peptidase_M1 PF01433.20 BAD86062.1 - 3.8e-08 33.2 0.5 8.1e-08 32.1 0.5 1.6 1 1 0 1 1 1 1 Peptidase family M1 domain Cu_amine_oxidN1 PF07833.11 BAD86062.1 - 0.097 13.2 0.1 0.29 11.6 0.1 1.8 1 0 0 1 1 1 0 Copper amine oxidase N-terminal domain DUF5474 PF17568.2 BAD86062.1 - 0.37 10.9 3.5 46 4.2 0.2 3.3 2 1 1 3 3 3 0 Family of unknown function (DUF5474) tRNA-synt_1b PF00579.25 BAD86063.1 - 9.5e-27 94.1 0.0 1.4e-26 93.5 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) DUF104 PF01954.16 BAD86064.1 - 1.2e-16 60.9 5.0 1.3e-16 60.8 5.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF104 EamA PF00892.20 BAD86065.1 - 2.7e-30 105.3 38.1 2.6e-15 56.8 15.0 2.1 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.6 BAD86065.1 - 0.11 12.0 11.9 0.11 12.0 5.5 3.0 1 1 1 2 2 2 0 Putative multidrug resistance efflux transporter TMEM234 PF10639.9 BAD86065.1 - 1.1 9.3 5.7 1.5 8.9 1.0 2.3 2 0 0 2 2 2 0 Putative transmembrane family 234 UAA PF08449.11 BAD86065.1 - 8.7 5.5 14.2 1.4 8.1 2.5 2.3 2 1 0 2 2 2 0 UAA transporter family DUF234 PF03008.14 BAD86066.1 - 4e-31 107.4 1.6 8.1e-31 106.4 1.6 1.5 1 0 0 1 1 1 1 Archaea bacterial proteins of unknown function ATPase_2 PF01637.18 BAD86066.1 - 6.5e-28 98.2 0.1 1.6e-27 96.9 0.1 1.7 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 BAD86066.1 - 7.8e-09 35.7 0.0 1.6e-08 34.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 BAD86066.1 - 8.9e-08 32.5 0.0 2.7e-07 30.9 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 BAD86066.1 - 4.8e-07 30.3 0.1 2e-06 28.3 0.0 1.9 2 1 0 2 2 2 1 AAA ATPase domain HTH_IclR PF09339.10 BAD86066.1 - 0.00031 20.5 0.0 0.00057 19.6 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain AAA PF00004.29 BAD86066.1 - 0.00074 20.0 0.1 0.0017 18.8 0.0 1.6 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) HTH_5 PF01022.20 BAD86066.1 - 0.0035 17.2 0.0 0.01 15.7 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TniB PF05621.11 BAD86066.1 - 0.0077 15.7 0.0 0.09 12.2 0.0 2.4 2 1 0 2 2 2 1 Bacterial TniB protein TrmB PF01978.19 BAD86066.1 - 0.11 12.4 0.0 1.3 9.0 0.0 2.6 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB Lactamase_B_2 PF12706.7 BAD86067.1 - 1e-23 83.9 1.0 1.3e-23 83.6 1.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 BAD86067.1 - 2.2e-10 40.9 2.9 3.4e-10 40.3 2.9 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 BAD86067.1 - 1.6e-08 34.6 0.0 2.1e-08 34.2 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain PDEase_II PF02112.15 BAD86067.1 - 0.015 14.4 0.2 0.092 11.8 0.3 1.9 1 1 1 2 2 2 0 cAMP phosphodiesterases class-II Lactamase_B_6 PF16661.5 BAD86067.1 - 0.052 13.0 0.0 0.088 12.2 0.0 1.3 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain NIF PF03031.18 BAD86068.1 - 0.025 14.3 0.0 0.045 13.5 0.0 1.3 1 0 0 1 1 1 0 NLI interacting factor-like phosphatase DUF3240 PF11582.8 BAD86068.1 - 0.043 14.0 0.0 0.089 12.9 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3240) Succ_CoA_lig PF13607.6 BAD86069.1 - 4.8e-59 198.1 2.2 3.6e-57 192.0 0.3 3.4 3 1 1 4 4 4 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 BAD86069.1 - 1.1e-23 83.9 3.9 2.4e-23 82.8 0.8 2.7 3 0 0 3 3 3 1 CoA binding domain CoA_binding PF02629.19 BAD86069.1 - 3.6e-16 59.6 5.0 3.4e-15 56.5 2.1 2.6 2 1 0 2 2 2 1 CoA binding domain F420_oxidored PF03807.17 BAD86069.1 - 0.021 15.4 0.2 0.021 15.4 0.2 2.5 3 1 1 4 4 4 0 NADP oxidoreductase coenzyme F420-dependent Semialdhyde_dh PF01118.24 BAD86069.1 - 0.036 14.5 0.5 1.8 9.0 0.8 3.2 2 1 0 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 BAD86069.1 - 0.052 13.5 0.0 0.14 12.1 0.0 1.7 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus HTH_20 PF12840.7 BAD86070.1 - 9.7e-16 57.6 0.1 2.2e-15 56.4 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 BAD86070.1 - 1.2e-15 57.1 0.2 1.2e-15 57.1 0.2 2.7 4 0 0 4 4 2 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 BAD86070.1 - 4e-09 35.9 0.6 4e-09 35.9 0.6 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 BAD86070.1 - 5.7e-08 32.6 0.5 1.6e-07 31.1 0.5 1.8 1 0 0 1 1 1 1 HTH domain TrmB PF01978.19 BAD86070.1 - 2.6e-07 30.4 0.7 3.8e-06 26.7 0.1 2.3 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 BAD86070.1 - 1.9e-06 27.7 0.0 3.4e-06 26.9 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_29 PF13551.6 BAD86070.1 - 2.3e-05 24.3 0.0 4.2e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix ArsR PF09824.9 BAD86070.1 - 3.3e-05 23.5 1.7 0.00015 21.4 1.5 2.1 1 1 0 1 1 1 1 ArsR transcriptional regulator DUF2513 PF10711.9 BAD86070.1 - 3.8e-05 23.9 3.2 0.00081 19.6 0.1 2.2 2 0 0 2 2 2 1 Hypothetical protein (DUF2513) HTH_23 PF13384.6 BAD86070.1 - 4.5e-05 23.1 0.0 0.00012 21.7 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain HTH_38 PF13936.6 BAD86070.1 - 8.7e-05 22.2 0.3 0.00022 20.9 0.3 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_28 PF13518.6 BAD86070.1 - 9.8e-05 22.4 0.0 0.00024 21.2 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 BAD86070.1 - 0.00051 20.0 0.4 0.0014 18.6 0.3 1.8 2 0 0 2 2 1 1 Crp-like helix-turn-helix domain TFIIE_alpha PF02002.17 BAD86070.1 - 0.00079 19.3 1.1 0.00079 19.3 1.1 2.6 1 1 2 3 3 3 1 TFIIE alpha subunit HTH_34 PF13601.6 BAD86070.1 - 0.0013 18.9 0.3 0.0062 16.7 0.1 2.1 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_40 PF14493.6 BAD86070.1 - 0.0027 18.1 3.9 0.018 15.5 3.8 2.4 1 1 0 1 1 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.19 BAD86070.1 - 0.0031 17.7 0.1 0.01 16.0 0.0 1.9 2 0 0 2 2 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.6 BAD86070.1 - 0.0042 17.5 0.2 0.012 16.0 0.2 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain Sigma70_r4_2 PF08281.12 BAD86070.1 - 0.0047 16.6 1.8 0.0061 16.2 0.2 2.0 2 0 0 2 2 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 BAD86070.1 - 0.0079 15.7 0.3 0.018 14.5 0.3 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 Rrf2 PF02082.20 BAD86070.1 - 0.008 16.5 0.4 0.023 15.0 0.1 1.9 2 0 0 2 2 1 1 Transcriptional regulator HTH_IclR PF09339.10 BAD86070.1 - 0.0085 15.9 0.0 0.02 14.7 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_DeoR PF08220.12 BAD86070.1 - 0.01 15.5 2.1 0.014 15.1 0.4 2.0 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain mTERF PF02536.14 BAD86070.1 - 0.011 14.6 1.4 0.27 10.1 0.2 2.4 2 1 0 2 2 2 0 mTERF MarR PF01047.22 BAD86070.1 - 0.016 15.1 0.5 0.036 14.0 0.5 1.6 1 0 0 1 1 1 0 MarR family DUF2250 PF10007.9 BAD86070.1 - 0.049 13.7 3.3 2.7 8.2 0.3 2.6 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_CodY PF08222.11 BAD86070.1 - 0.068 12.7 0.1 0.22 11.1 0.0 1.9 2 0 0 2 2 2 0 CodY helix-turn-helix domain MerR_1 PF13411.6 BAD86070.1 - 0.075 13.1 1.6 0.93 9.6 0.0 3.0 2 1 1 3 3 3 0 MerR HTH family regulatory protein DUF592 PF04574.13 BAD86070.1 - 0.1 12.4 4.4 0.077 12.8 1.0 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF592) AAA_23 PF13476.6 BAD86070.1 - 0.61 10.5 6.8 0.91 10.0 6.8 1.3 1 0 0 1 1 1 0 AAA domain HTH_WhiA PF02650.14 BAD86070.1 - 0.74 10.2 4.1 0.77 10.1 0.5 2.6 2 1 1 3 3 3 0 WhiA C-terminal HTH domain FeoB_Cyto PF17910.1 BAD86070.1 - 1.3 9.7 6.0 0.71 10.4 1.9 2.3 2 1 0 2 2 2 0 FeoB cytosolic helical domain DUF1456 PF07308.13 BAD86070.1 - 3.4 8.1 6.7 13 6.2 2.9 3.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1456) DUF211 PF02680.14 BAD86071.1 - 2.7e-38 130.0 2.7 3e-38 129.8 2.7 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 Streptin-Immun PF11083.8 BAD86071.1 - 0.032 14.6 0.2 0.032 14.6 0.2 1.4 2 0 0 2 2 2 0 Lantibiotic streptin immunity protein HTH_5 PF01022.20 BAD86072.1 - 2e-15 56.3 0.2 9.5e-15 54.2 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 BAD86072.1 - 4.7e-14 52.2 0.0 8.5e-14 51.4 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 BAD86072.1 - 7.5e-10 38.2 0.4 2.2e-09 36.8 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 BAD86072.1 - 2.2e-09 37.1 0.5 8.7e-09 35.2 0.1 2.2 2 0 0 2 2 2 1 HTH domain MarR_2 PF12802.7 BAD86072.1 - 2.8e-08 33.5 0.0 5.6e-08 32.6 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 BAD86072.1 - 4.1e-08 32.9 0.0 9.6e-08 31.7 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 BAD86072.1 - 6.4e-08 32.4 0.6 2.1e-07 30.7 0.1 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 BAD86072.1 - 1.6e-06 27.9 0.4 0.00014 21.7 0.0 2.5 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain MarR PF01047.22 BAD86072.1 - 2.4e-06 27.4 0.1 7.3e-06 25.8 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_23 PF13384.6 BAD86072.1 - 1.1e-05 25.1 0.0 2.6e-05 23.9 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.6 BAD86072.1 - 1.1e-05 25.3 0.0 1.7e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix HTH_38 PF13936.6 BAD86072.1 - 1.6e-05 24.6 0.0 6.2e-05 22.7 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain FUR PF01475.19 BAD86072.1 - 3e-05 24.2 0.2 6.5e-05 23.1 0.2 1.6 1 1 0 1 1 1 1 Ferric uptake regulator family GntR PF00392.21 BAD86072.1 - 7.1e-05 22.4 2.0 0.0012 18.4 0.1 2.9 3 0 0 3 3 3 1 Bacterial regulatory proteins, gntR family HTH_28 PF13518.6 BAD86072.1 - 7.8e-05 22.7 0.0 0.00017 21.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain DUF592 PF04574.13 BAD86072.1 - 0.00034 20.4 0.1 0.00063 19.5 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF592) HTH_17 PF12728.7 BAD86072.1 - 0.0033 17.6 0.0 0.0075 16.4 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_36 PF13730.6 BAD86072.1 - 0.0036 17.2 0.0 0.0096 15.9 0.0 1.7 2 0 0 2 2 1 1 Helix-turn-helix domain DprA_WH PF17782.1 BAD86072.1 - 0.0039 17.3 0.0 0.0084 16.2 0.0 1.5 1 0 0 1 1 1 1 DprA winged helix domain HTH_27 PF13463.6 BAD86072.1 - 0.004 17.6 0.4 0.01 16.3 0.1 1.8 2 0 0 2 2 1 1 Winged helix DNA-binding domain HTH_AsnC-type PF13404.6 BAD86072.1 - 0.0075 16.1 0.1 0.026 14.4 0.0 2.0 2 0 0 2 2 1 1 AsnC-type helix-turn-helix domain HTH_42 PF06224.12 BAD86072.1 - 0.011 15.3 0.0 0.015 14.9 0.0 1.1 1 0 0 1 1 1 0 Winged helix DNA-binding domain Penicillinase_R PF03965.16 BAD86072.1 - 0.014 15.7 0.3 0.026 14.9 0.2 1.5 1 1 0 1 1 1 0 Penicillinase repressor TnsD PF15978.5 BAD86072.1 - 0.016 14.2 0.0 0.025 13.6 0.0 1.3 1 0 0 1 1 1 0 Tn7-like transposition protein D DUF1456 PF07308.13 BAD86072.1 - 0.019 15.3 0.7 1.4 9.3 0.4 3.0 1 1 0 2 2 2 0 Protein of unknown function (DUF1456) HTH_DeoR PF08220.12 BAD86072.1 - 0.023 14.4 0.1 0.061 13.1 0.1 1.7 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain PadR PF03551.14 BAD86072.1 - 0.023 14.6 0.2 0.069 13.1 0.2 1.8 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family STI1 PF17830.1 BAD86072.1 - 0.028 14.3 0.0 0.056 13.4 0.0 1.4 1 0 0 1 1 1 0 STI1 domain B-block_TFIIIC PF04182.12 BAD86072.1 - 0.051 13.7 0.0 0.1 12.8 0.0 1.5 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_32 PF13565.6 BAD86072.1 - 0.089 13.4 0.1 0.95 10.1 0.0 2.3 1 1 1 2 2 2 0 Homeodomain-like domain HTH_Tnp_ISL3 PF13542.6 BAD86072.1 - 0.095 12.1 0.0 0.17 11.3 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 Crp PF00325.20 BAD86072.1 - 0.11 12.1 0.0 0.2 11.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, crp family HTH_8 PF02954.19 BAD86072.1 - 0.16 11.8 1.7 11 5.9 0.0 2.7 3 0 0 3 3 2 0 Bacterial regulatory protein, Fis family DUF4238 PF14022.6 BAD86072.1 - 0.17 11.4 2.5 0.4 10.1 0.3 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF4238) DUF1939 PF09154.10 BAD86073.1 - 1.9e-21 76.0 1.7 5.5e-21 74.5 1.7 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF1939) Alpha-amylase PF00128.24 BAD86073.1 - 9.8e-13 48.4 4.2 1.1e-11 44.9 4.2 2.3 1 1 0 1 1 1 1 Alpha amylase, catalytic domain Glyco_hydro_70 PF02324.16 BAD86073.1 - 0.0049 15.1 0.0 0.0073 14.6 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 70 Carb_kinase PF01256.17 BAD86075.1 - 3.6e-51 174.0 0.0 4.7e-51 173.6 0.0 1.1 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.15 BAD86075.1 - 4.9e-33 114.4 0.0 1.1e-32 113.3 0.0 1.5 1 0 0 1 1 1 1 YjeF-related protein N-terminus HK PF02110.15 BAD86075.1 - 0.0006 19.3 0.2 0.0014 18.1 0.2 1.6 1 1 0 1 1 1 1 Hydroxyethylthiazole kinase family Phos_pyr_kin PF08543.12 BAD86075.1 - 0.0028 17.1 0.0 0.006 16.0 0.0 1.6 1 1 0 1 1 1 1 Phosphomethylpyrimidine kinase EamA PF00892.20 BAD86076.1 - 0.0011 19.1 2.5 0.0011 19.1 2.5 1.9 1 1 1 2 2 2 1 EamA-like transporter family CPP1-like PF11833.8 BAD86076.1 - 0.25 11.0 7.2 0.27 10.9 7.2 1.0 1 0 0 1 1 1 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like Romo1 PF10247.9 BAD86076.1 - 0.61 10.5 6.0 0.18 12.2 0.7 2.3 2 1 0 2 2 2 0 Reactive mitochondrial oxygen species modulator 1 Ycf66_N PF07444.11 BAD86076.1 - 3.1 8.0 8.9 1.9 8.7 1.3 3.0 1 1 1 2 2 2 0 Ycf66 protein N-terminus DUF1129 PF06570.11 BAD86076.1 - 6.5 6.2 6.3 0.58 9.6 2.2 1.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1129) Holin_9 PF16936.5 BAD86078.1 - 0.067 13.4 2.3 0.11 12.7 2.3 1.4 1 0 0 1 1 1 0 Putative holin Macro PF01661.21 BAD86079.1 - 1.2e-34 118.8 0.1 1.8e-34 118.3 0.1 1.2 1 0 0 1 1 1 1 Macro domain GRDB PF07355.12 BAD86079.1 - 0.0097 15.2 0.0 0.013 14.8 0.0 1.1 1 0 0 1 1 1 1 Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) AP_endonuc_2 PF01261.24 BAD86079.1 - 0.023 14.1 0.0 0.03 13.7 0.0 1.3 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel Amidohydro_1 PF01979.20 BAD86080.1 - 1.6e-79 267.7 0.3 1.9e-79 267.5 0.3 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 BAD86080.1 - 2.3e-21 76.8 1.0 3.4e-14 53.2 0.0 2.2 2 0 0 2 2 2 2 Amidohydrolase family A_deaminase PF00962.22 BAD86080.1 - 0.00069 19.0 0.0 0.0012 18.2 0.0 1.3 1 0 0 1 1 1 1 Adenosine/AMP deaminase TatD_DNase PF01026.21 BAD86080.1 - 0.064 12.6 0.1 0.14 11.5 0.1 1.5 1 1 0 1 1 1 0 TatD related DNase DUF553 PF04473.12 BAD86081.1 - 2.6e-57 192.7 0.0 7.7e-57 191.1 0.0 1.8 2 0 0 2 2 2 1 Transglutaminase-like domain zf-AN1 PF01428.16 BAD86081.1 - 0.015 15.5 4.2 0.034 14.3 4.2 1.5 1 1 0 1 1 1 0 AN1-like Zinc finger Transglut_core PF01841.19 BAD86081.1 - 0.021 15.3 0.0 0.18 12.3 0.0 2.3 1 1 0 1 1 1 0 Transglutaminase-like superfamily DUF4667 PF15700.5 BAD86081.1 - 0.03 14.4 0.0 0.045 13.9 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4667) OrfB_Zn_ribbon PF07282.11 BAD86081.1 - 0.065 13.2 2.2 3 7.8 3.3 2.4 2 0 0 2 2 2 0 Putative transposase DNA-binding domain Rubredoxin_2 PF18073.1 BAD86081.1 - 0.22 11.3 6.3 3.7 7.3 0.8 2.8 3 0 0 3 3 3 0 Rubredoxin metal binding domain zf-C2H2_4 PF13894.6 BAD86081.1 - 0.28 12.1 2.0 1.1 10.3 2.0 2.0 1 0 0 1 1 1 0 C2H2-type zinc finger CPV_Polyhedrin PF17515.2 BAD86081.1 - 0.4 10.0 3.4 0.14 11.6 0.2 1.7 2 0 0 2 2 2 0 Cypovirus polyhedrin MOFRL PF05161.13 BAD86082.1 - 2e-36 124.5 1.0 3.7e-36 123.6 1.0 1.4 1 0 0 1 1 1 1 MOFRL family NBD_C PF17042.5 BAD86082.1 - 0.0081 16.7 0.0 0.019 15.5 0.0 1.6 1 0 0 1 1 1 1 Nucleotide-binding C-terminal domain VanZ PF04892.12 BAD86083.1 - 0.028 15.1 2.2 0.032 14.9 2.2 1.1 1 0 0 1 1 1 0 VanZ like family PNP_UDP_1 PF01048.20 BAD86084.1 - 5.5e-49 166.5 0.0 6.7e-49 166.2 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily PAC2 PF09754.9 BAD86085.1 - 1.2e-45 156.1 0.0 1.4e-45 155.9 0.0 1.0 1 0 0 1 1 1 1 PAC2 family DUF473 PF04322.12 BAD86086.1 - 1.9e-31 108.4 0.2 2.1e-31 108.2 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF473) NucS PF01939.16 BAD86087.1 - 5.2e-87 291.0 0.1 5.9e-87 290.8 0.1 1.0 1 0 0 1 1 1 1 Endonuclease NucS Cas_Cas4 PF01930.17 BAD86087.1 - 0.0078 16.3 0.0 0.027 14.6 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function DUF83 Rad51 PF08423.11 BAD86088.1 - 3.4e-86 288.6 0.7 4.2e-70 235.9 0.0 2.5 3 0 0 3 3 3 2 Rad51 Intein_splicing PF14890.6 BAD86088.1 - 7.5e-20 71.2 0.0 2.4e-19 69.6 0.0 1.9 2 0 0 2 2 2 1 Intein splicing domain LAGLIDADG_3 PF14528.6 BAD86088.1 - 3.2e-15 56.2 0.5 1.4e-13 50.9 0.2 2.8 2 0 0 2 2 2 1 LAGLIDADG-like domain HHH_5 PF14520.6 BAD86088.1 - 2e-11 44.3 1.9 2e-11 44.3 1.9 3.0 2 0 0 2 2 2 1 Helix-hairpin-helix domain RecA PF00154.21 BAD86088.1 - 8.3e-09 35.3 0.1 0.0036 16.8 0.0 2.3 2 0 0 2 2 2 2 recA bacterial DNA recombination protein Hom_end PF05204.14 BAD86088.1 - 1.5e-05 25.1 0.1 0.00086 19.5 0.0 2.5 2 0 0 2 2 2 1 Homing endonuclease Cdd1 PF11731.8 BAD86088.1 - 3.2e-05 24.1 0.0 7.3e-05 22.9 0.0 1.6 1 0 0 1 1 1 1 Pathogenicity locus HHH_2 PF12826.7 BAD86088.1 - 0.00027 21.0 1.4 0.00066 19.7 0.1 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH PF00633.23 BAD86088.1 - 0.00065 19.5 6.4 0.0044 16.8 0.1 3.5 3 0 0 3 3 3 1 Helix-hairpin-helix motif ATPase PF06745.13 BAD86088.1 - 0.0008 18.8 0.1 0.017 14.5 0.1 2.3 2 0 0 2 2 2 1 KaiC AAA_25 PF13481.6 BAD86088.1 - 0.0011 18.6 0.4 0.0058 16.2 0.1 2.1 2 0 0 2 2 2 1 AAA domain DNA_pol_lambd_f PF10391.9 BAD86088.1 - 0.0044 16.8 0.0 0.013 15.3 0.0 1.8 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda IMS_HHH PF11798.8 BAD86088.1 - 0.013 15.8 0.0 0.094 13.1 0.0 2.5 2 0 0 2 2 2 0 IMS family HHH motif CPSase_L_D3 PF02787.19 BAD86088.1 - 0.019 15.3 0.0 0.066 13.6 0.0 1.9 1 0 0 1 1 1 0 Carbamoyl-phosphate synthetase large chain, oligomerisation domain HHH_8 PF14716.6 BAD86088.1 - 0.026 14.9 1.0 0.45 10.9 0.0 3.0 2 0 0 2 2 2 0 Helix-hairpin-helix domain Sigma54_CBD PF04963.13 BAD86088.1 - 0.04 13.8 0.0 0.23 11.3 0.0 2.3 2 0 0 2 2 2 0 Sigma-54 factor, core binding domain YmzC PF14157.6 BAD86088.1 - 0.085 12.9 0.0 0.19 11.8 0.0 1.5 1 0 0 1 1 1 0 YmzC-like protein HHH_3 PF12836.7 BAD86088.1 - 0.11 12.8 0.8 6.4 7.1 0.1 3.5 2 1 1 3 3 3 0 Helix-hairpin-helix motif Ion_trans_2 PF07885.16 BAD86089.1 - 1.3e-18 66.7 10.4 2.5e-18 65.8 10.4 1.4 1 0 0 1 1 1 1 Ion channel TrkA_N PF02254.18 BAD86089.1 - 3.9e-18 65.8 0.7 9e-18 64.6 0.1 1.9 2 0 0 2 2 2 1 TrkA-N domain Ion_trans PF00520.31 BAD86089.1 - 2.4e-05 23.7 2.5 3.8e-05 23.0 2.5 1.3 1 0 0 1 1 1 1 Ion transport protein ADH_zinc_N PF00107.26 BAD86089.1 - 0.0082 16.1 0.0 0.025 14.5 0.0 1.8 1 0 0 1 1 1 1 Zinc-binding dehydrogenase DUF2721 PF11026.8 BAD86089.1 - 0.015 15.2 2.7 0.015 15.2 2.7 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2721) NAD_binding_10 PF13460.6 BAD86089.1 - 0.055 13.4 0.3 0.099 12.5 0.3 1.4 1 0 0 1 1 1 0 NAD(P)H-binding 7TM-7TMR_HD PF07698.11 BAD86089.1 - 0.38 10.5 8.3 0.56 9.9 8.3 1.1 1 0 0 1 1 1 0 7TM receptor with intracellular HD hydrolase Cdc6_C PF09079.11 BAD86090.1 - 6e-27 93.4 0.3 4.4e-26 90.7 0.0 2.5 3 0 0 3 3 2 1 CDC6, C terminal winged helix domain AAA_16 PF13191.6 BAD86090.1 - 2.1e-10 41.2 0.1 4.1e-09 37.0 0.0 2.6 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 BAD86090.1 - 3e-10 40.6 0.2 9.2e-10 39.1 0.1 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 BAD86090.1 - 3.8e-09 36.9 0.0 2.6e-08 34.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain ATPase_2 PF01637.18 BAD86090.1 - 2.1e-07 31.1 1.1 4.6e-07 30.0 1.1 1.6 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea TniB PF05621.11 BAD86090.1 - 3.2e-06 26.7 0.1 7.2e-06 25.5 0.1 1.5 1 0 0 1 1 1 1 Bacterial TniB protein NB-ARC PF00931.22 BAD86090.1 - 0.00014 21.1 0.4 0.00022 20.5 0.1 1.5 2 0 0 2 2 2 1 NB-ARC domain DUF815 PF05673.13 BAD86090.1 - 0.00029 20.1 0.2 0.0011 18.3 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF815) KAP_NTPase PF07693.14 BAD86090.1 - 0.00083 18.7 0.1 0.35 10.1 0.0 2.4 2 0 0 2 2 2 2 KAP family P-loop domain DEAD PF00270.29 BAD86090.1 - 0.0015 18.3 1.4 0.54 10.0 1.4 2.4 1 1 0 1 1 1 1 DEAD/DEAH box helicase AAA_32 PF13654.6 BAD86090.1 - 0.0024 16.8 2.1 0.063 12.0 0.1 2.2 2 0 0 2 2 2 1 AAA domain DUF2075 PF09848.9 BAD86090.1 - 0.0031 16.8 0.0 0.005 16.1 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) Microtub_bd PF16796.5 BAD86090.1 - 0.005 16.8 0.0 0.013 15.4 0.0 1.8 1 0 0 1 1 1 1 Microtubule binding AAA_assoc_2 PF16193.5 BAD86090.1 - 0.0052 17.1 0.1 0.02 15.2 0.1 2.0 1 0 0 1 1 1 1 AAA C-terminal domain Kinesin PF00225.23 BAD86090.1 - 0.0061 15.5 0.0 0.011 14.7 0.0 1.3 1 0 0 1 1 1 1 Kinesin motor domain AAA_24 PF13479.6 BAD86090.1 - 0.0062 16.3 0.4 0.013 15.2 0.4 1.6 1 1 0 1 1 1 1 AAA domain AAA_lid_10 PF17872.1 BAD86090.1 - 0.0076 16.4 0.2 1.6 8.9 0.1 2.6 2 0 0 2 2 2 1 AAA lid domain Sigma54_activat PF00158.26 BAD86090.1 - 0.0076 16.0 0.0 0.034 13.8 0.0 2.0 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_7 PF12775.7 BAD86090.1 - 0.012 15.1 0.0 0.023 14.2 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_2 PF07724.14 BAD86090.1 - 0.02 15.0 0.1 0.11 12.6 0.0 2.2 2 1 0 2 2 1 0 AAA domain (Cdc48 subfamily) NACHT PF05729.12 BAD86090.1 - 0.03 14.3 0.0 0.072 13.0 0.0 1.7 1 0 0 1 1 1 0 NACHT domain Thioredoxin_8 PF13905.6 BAD86090.1 - 0.048 14.0 0.5 7.6 6.9 0.2 2.7 1 1 1 2 2 2 0 Thioredoxin-like T2SSE PF00437.20 BAD86090.1 - 0.049 12.7 0.0 0.11 11.5 0.0 1.6 1 0 0 1 1 1 0 Type II/IV secretion system protein DUF166 PF02593.14 BAD86090.1 - 0.055 13.0 1.2 1.2 8.7 0.5 2.2 1 1 1 2 2 2 0 Domain of unknown function DUF853 PF05872.12 BAD86090.1 - 0.069 11.7 0.0 0.18 10.3 0.0 1.6 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF853) PIF1 PF05970.14 BAD86090.1 - 0.072 12.2 0.0 0.13 11.4 0.0 1.3 1 0 0 1 1 1 0 PIF1-like helicase DUF87 PF01935.17 BAD86090.1 - 0.078 13.1 2.1 0.18 11.9 0.4 2.3 1 1 1 2 2 2 0 Helicase HerA, central domain FtsK_SpoIIIE PF01580.18 BAD86090.1 - 0.083 12.2 0.1 0.65 9.3 0.0 2.1 2 0 0 2 2 2 0 FtsK/SpoIIIE family Zeta_toxin PF06414.12 BAD86090.1 - 0.11 11.8 0.4 0.68 9.2 0.0 2.3 2 1 0 2 2 2 0 Zeta toxin AAA_19 PF13245.6 BAD86090.1 - 0.12 12.7 0.1 0.38 11.1 0.1 1.8 1 0 0 1 1 1 0 AAA domain ResIII PF04851.15 BAD86090.1 - 0.12 12.3 0.2 0.48 10.4 0.2 1.8 1 1 1 2 2 2 0 Type III restriction enzyme, res subunit Mg_chelatase_C PF13335.6 BAD86090.1 - 0.16 12.6 0.4 0.68 10.6 0.4 2.0 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI C-terminal DNA_pol_E_B PF04042.16 BAD86091.1 - 3.7e-15 55.8 0.0 5.9e-15 55.2 0.0 1.4 1 0 0 1 1 1 1 DNA polymerase alpha/epsilon subunit B Metallophos PF00149.28 BAD86091.1 - 4.4e-11 43.7 0.2 8.5e-11 42.7 0.2 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase tRNA_anti-codon PF01336.25 BAD86091.1 - 1.2e-05 25.2 0.0 3e-05 23.9 0.0 1.7 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain Metallophos_2 PF12850.7 BAD86091.1 - 0.00054 20.2 0.0 0.0018 18.5 0.0 1.9 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain HIN PF02760.15 BAD86091.1 - 0.11 12.2 0.1 0.26 11.0 0.1 1.6 1 0 0 1 1 1 0 HIN-200/IF120x domain PolC_DP2 PF03833.13 BAD86092.1 - 0 1201.3 0.9 0 1201.0 0.0 1.5 2 0 0 2 2 2 1 DNA polymerase II large subunit DP2 Intein_splicing PF14890.6 BAD86092.1 - 1.6e-14 54.0 0.2 7.9e-14 51.7 0.1 2.2 2 0 0 2 2 2 1 Intein splicing domain LAGLIDADG_3 PF14528.6 BAD86092.1 - 2.9e-14 53.2 1.6 1.9e-08 34.5 0.0 3.4 3 0 0 3 3 3 2 LAGLIDADG-like domain zinc-ribbons_6 PF07191.12 BAD86092.1 - 0.0019 18.2 9.8 0.25 11.4 0.0 2.9 2 1 0 2 2 2 1 zinc-ribbons HypA PF01155.19 BAD86092.1 - 0.0023 17.9 11.9 0.54 10.3 0.1 3.6 2 1 1 3 3 3 2 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TackOD1 PF18551.1 BAD86092.1 - 0.0081 15.9 8.4 0.0087 15.8 4.2 2.3 2 0 0 2 2 2 1 Thaumarchaeal output domain 1 DZR PF12773.7 BAD86092.1 - 0.0083 16.1 16.6 0.89 9.6 9.4 3.1 2 1 0 2 2 2 2 Double zinc ribbon LAGLIDADG_WhiA PF14527.6 BAD86092.1 - 0.021 14.9 0.3 5.8 7.1 0.0 2.9 2 0 0 2 2 2 0 WhiA LAGLIDADG-like domain zf-HIT PF04438.16 BAD86092.1 - 1.2 9.1 22.5 0.4 10.6 1.0 4.9 5 0 0 5 5 5 0 HIT zinc finger zf-CHY PF05495.12 BAD86092.1 - 1.3 9.5 7.8 14 6.3 4.5 2.7 2 0 0 2 2 2 0 CHY zinc finger Sar8_2 PF03058.14 BAD86092.1 - 3.3 8.3 3.8 58 4.3 1.7 2.5 2 0 0 2 2 2 0 Sar8.2 family RecR PF02132.15 BAD86092.1 - 6 6.5 6.2 1.4 8.6 0.7 2.9 1 1 1 2 2 2 0 RecR protein Zn_Tnp_IS91 PF14319.6 BAD86092.1 - 6.6 6.8 7.7 17 5.5 4.0 2.7 2 0 0 2 2 2 0 Transposase zinc-binding domain Zn_ribbon_SprT PF17283.2 BAD86092.1 - 9.7 6.2 19.7 0.84 9.6 1.6 3.9 4 1 0 4 4 4 0 SprT-like zinc ribbon domain Prok-RING_1 PF14446.6 BAD86093.1 - 0.0027 17.6 0.3 0.0041 17.0 0.3 1.2 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 TackOD1 PF18551.1 BAD86093.1 - 0.025 14.2 0.5 0.04 13.6 0.5 1.2 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 zf-C2H2_3 PF13878.6 BAD86093.1 - 0.037 13.8 0.5 0.14 12.0 0.0 2.0 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO C1_2 PF03107.16 BAD86093.1 - 0.045 14.1 0.4 0.075 13.4 0.4 1.3 1 0 0 1 1 1 0 C1 domain Rad50_zn_hook PF04423.14 BAD86093.1 - 0.072 12.9 0.2 0.14 12.1 0.2 1.4 1 0 0 1 1 1 0 Rad50 zinc hook motif Rubredoxin PF00301.20 BAD86093.1 - 0.074 13.1 0.5 5.6 7.1 0.1 2.4 2 0 0 2 2 2 0 Rubredoxin DZR PF12773.7 BAD86093.1 - 0.088 12.8 0.4 0.14 12.2 0.4 1.2 1 0 0 1 1 1 0 Double zinc ribbon Ribosomal_L37ae PF01780.19 BAD86093.1 - 0.18 11.9 0.1 0.3 11.2 0.1 1.3 1 0 0 1 1 1 0 Ribosomal L37ae protein family C1_1 PF00130.22 BAD86093.1 - 0.18 11.7 0.7 0.3 11.0 0.7 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Auto_anti-p27 PF06677.12 BAD86093.1 - 0.49 10.6 1.7 1.1 9.5 1.7 1.6 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-H2C2_2 PF13465.6 BAD86093.1 - 1.7 9.2 4.5 6.5 7.4 0.2 2.4 2 0 0 2 2 2 0 Zinc-finger double domain NucS PF01939.16 BAD86094.1 - 0.00099 18.5 0.0 0.0014 18.0 0.0 1.1 1 0 0 1 1 1 1 Endonuclease NucS PDDEXK_9 PF08011.11 BAD86094.1 - 0.0018 18.1 0.1 0.0034 17.3 0.1 1.4 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily YhcG_C PF06250.11 BAD86094.1 - 0.09 12.6 0.0 0.23 11.3 0.0 1.6 1 0 0 1 1 1 0 YhcG PDDEXK nuclease domain HSDR_N_2 PF13588.6 BAD86094.1 - 0.1 12.6 0.0 0.31 11.1 0.0 1.8 2 0 0 2 2 2 0 Type I restriction enzyme R protein N terminus (HSDR_N) TYW3 PF02676.14 BAD86096.1 - 2.7e-39 134.7 0.0 3.6e-39 134.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase TYW3 BPL_LplA_LipB PF03099.19 BAD86097.1 - 3.3e-14 52.9 0.0 6e-14 52.1 0.0 1.4 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family Glycos_transf_2 PF00535.26 BAD86098.1 - 5.7e-39 133.7 0.0 9e-39 133.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 GtrA PF04138.14 BAD86098.1 - 4.4e-27 94.7 11.6 6.5e-27 94.1 11.6 1.3 1 0 0 1 1 1 1 GtrA-like protein Glyco_tranf_2_3 PF13641.6 BAD86098.1 - 2.6e-11 43.9 0.0 4e-11 43.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 BAD86098.1 - 0.00032 20.3 0.0 0.00046 19.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 DUF166 PF02593.14 BAD86098.1 - 0.039 13.5 0.0 0.068 12.7 0.0 1.4 1 1 0 1 1 1 0 Domain of unknown function ATPase PF06745.13 BAD86099.1 - 1.3e-48 165.3 0.0 1.5e-48 165.2 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 BAD86099.1 - 3.9e-08 33.1 0.0 1.2e-07 31.5 0.0 1.7 1 1 0 1 1 1 1 AAA domain RecA PF00154.21 BAD86099.1 - 2.2e-06 27.3 0.0 3e-06 26.9 0.0 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein DnaB_C PF03796.15 BAD86099.1 - 5.9e-06 25.8 0.0 0.00017 21.0 0.0 2.1 1 1 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_22 PF13401.6 BAD86099.1 - 2.6e-05 24.5 0.0 4.3e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain GvpD PF07088.11 BAD86099.1 - 2.6e-05 23.1 0.5 5.7e-05 21.9 0.5 1.5 1 1 0 1 1 1 1 GvpD gas vesicle protein AAA_14 PF13173.6 BAD86099.1 - 4.9e-05 23.4 0.1 0.00047 20.2 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 BAD86099.1 - 6.3e-05 23.5 0.0 0.00013 22.5 0.0 1.5 1 1 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 BAD86099.1 - 0.00015 21.8 0.1 0.00028 20.9 0.1 1.6 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_24 PF13479.6 BAD86099.1 - 0.00044 20.0 0.0 0.00072 19.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain DUF2075 PF09848.9 BAD86099.1 - 0.001 18.4 0.0 0.0011 18.3 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_16 PF13191.6 BAD86099.1 - 0.0029 18.0 0.0 0.0042 17.5 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain cobW PF02492.19 BAD86099.1 - 0.0064 16.1 0.0 0.011 15.3 0.0 1.4 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain NACHT PF05729.12 BAD86099.1 - 0.013 15.4 0.0 0.042 13.8 0.0 1.7 2 0 0 2 2 2 0 NACHT domain AAA_30 PF13604.6 BAD86099.1 - 0.029 14.1 0.0 0.05 13.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain Rad51 PF08423.11 BAD86099.1 - 0.034 13.4 0.1 0.096 11.9 0.0 1.6 2 0 0 2 2 2 0 Rad51 AAA_33 PF13671.6 BAD86099.1 - 0.034 14.3 0.0 0.067 13.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 BAD86099.1 - 0.036 14.4 0.1 0.074 13.4 0.1 1.5 1 0 0 1 1 1 0 AAA domain PAXNEB PF05625.11 BAD86099.1 - 0.046 12.9 0.2 0.44 9.6 0.0 2.2 2 1 0 2 2 2 0 PAXNEB protein AAA_11 PF13086.6 BAD86099.1 - 0.047 13.5 0.0 0.057 13.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 BAD86099.1 - 0.048 13.4 0.0 0.093 12.5 0.0 1.5 1 1 0 1 1 1 0 IstB-like ATP binding protein NTPase_1 PF03266.15 BAD86099.1 - 0.054 13.4 0.0 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 NTPase ABC_tran PF00005.27 BAD86099.1 - 0.073 13.6 0.0 0.14 12.7 0.0 1.5 1 0 0 1 1 1 0 ABC transporter T2SSE PF00437.20 BAD86099.1 - 0.095 11.7 0.0 0.15 11.1 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein DAP3 PF10236.9 BAD86099.1 - 0.1 11.8 0.0 0.23 10.6 0.0 1.5 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 AAA_29 PF13555.6 BAD86099.1 - 0.12 12.2 0.0 0.24 11.2 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_28 PF13521.6 BAD86099.1 - 0.12 12.6 0.0 0.21 11.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 BAD86099.1 - 0.13 12.7 0.4 0.26 11.7 0.3 1.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Peptidase_M28 PF04389.17 BAD86101.1 - 1.5e-17 64.0 0.0 2.7e-17 63.1 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M28 DUF4910 PF16254.5 BAD86101.1 - 4e-12 45.5 0.0 1.5e-11 43.6 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF4910) PA PF02225.22 BAD86101.1 - 0.00097 19.1 0.0 0.0019 18.1 0.0 1.5 1 0 0 1 1 1 1 PA domain TrmB PF01978.19 BAD86102.1 - 4.4e-10 39.3 0.7 6.9e-10 38.7 0.5 1.4 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB FaeA PF04703.12 BAD86102.1 - 4.8e-05 23.6 1.6 0.00017 21.9 0.1 2.2 2 1 0 2 2 2 1 FaeA-like protein HTH_IclR PF09339.10 BAD86102.1 - 6e-05 22.8 0.1 0.00012 21.8 0.1 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.20 BAD86102.1 - 7.9e-05 22.4 0.2 0.00014 21.6 0.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 BAD86102.1 - 0.00014 21.4 1.1 0.00024 20.6 0.4 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 BAD86102.1 - 0.00026 20.9 1.6 0.0003 20.6 0.6 1.7 2 0 0 2 2 1 1 HTH domain HTH_Mga PF08280.11 BAD86102.1 - 0.0024 17.9 0.4 0.0063 16.5 0.1 1.8 2 1 0 2 2 2 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_DeoR PF08220.12 BAD86102.1 - 0.0027 17.4 0.3 0.0064 16.2 0.3 1.7 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain PaaX PF07848.12 BAD86102.1 - 0.0035 17.5 0.1 0.029 14.6 0.0 2.2 2 0 0 2 2 2 1 PaaX-like protein GerE PF00196.19 BAD86102.1 - 0.0062 16.1 0.4 0.013 15.0 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family LexA_DNA_bind PF01726.16 BAD86102.1 - 0.0073 16.1 0.1 0.0073 16.1 0.1 1.8 3 0 0 3 3 1 1 LexA DNA binding domain MarR PF01047.22 BAD86102.1 - 0.0074 16.2 0.2 0.016 15.1 0.2 1.7 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 BAD86102.1 - 0.01 15.9 0.4 0.022 14.8 0.5 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.6 BAD86102.1 - 0.016 15.0 0.9 0.067 13.0 0.2 2.3 1 1 1 2 2 2 0 Homeodomain-like domain HTH_28 PF13518.6 BAD86102.1 - 0.021 14.9 0.1 0.049 13.8 0.1 1.8 1 1 0 1 1 1 0 Helix-turn-helix domain Penicillinase_R PF03965.16 BAD86102.1 - 0.029 14.7 0.4 0.04 14.3 0.4 1.2 1 0 0 1 1 1 0 Penicillinase repressor Dimerisation2 PF16864.5 BAD86102.1 - 0.03 14.3 0.0 0.038 14.0 0.0 1.2 1 0 0 1 1 1 0 Dimerisation domain HTH_10 PF04967.12 BAD86102.1 - 0.033 14.0 0.2 0.36 10.7 0.0 2.5 3 0 0 3 3 3 0 HTH DNA binding domain HTH_40 PF14493.6 BAD86102.1 - 0.037 14.5 0.2 0.057 13.9 0.2 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain Fe_dep_repress PF01325.19 BAD86102.1 - 0.043 14.0 0.1 0.092 13.0 0.1 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain GntR PF00392.21 BAD86102.1 - 0.058 13.0 6.2 0.11 12.2 1.2 2.9 2 1 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_29 PF13551.6 BAD86102.1 - 0.063 13.3 0.0 0.14 12.2 0.0 1.6 1 1 0 1 1 1 0 Winged helix-turn helix MarR_2 PF12802.7 BAD86102.1 - 0.07 13.0 0.2 0.12 12.3 0.2 1.5 1 0 0 1 1 1 0 MarR family HTH_36 PF13730.6 BAD86102.1 - 0.13 12.2 2.6 3.2 7.8 0.0 3.0 2 1 1 3 3 3 0 Helix-turn-helix domain Phage_terminase PF10668.9 BAD86102.1 - 0.13 12.3 0.0 0.23 11.5 0.0 1.3 1 0 0 1 1 1 0 Phage terminase small subunit Tcell_CD4_C PF12104.8 BAD86102.1 - 0.62 10.0 4.2 13 5.8 0.9 2.4 2 0 0 2 2 2 0 T cell CD4 receptor C terminal region HTH_12 PF08461.10 BAD86102.1 - 0.62 10.1 5.7 0.12 12.4 1.7 1.9 2 1 0 2 2 2 0 Ribonuclease R winged-helix domain Metallophos PF00149.28 BAD86103.1 - 6.9e-10 39.8 0.1 1.2e-09 38.9 0.1 1.3 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 BAD86103.1 - 0.00024 21.3 0.0 0.00041 20.6 0.0 1.3 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Ribosomal_L41 PF05162.13 BAD86104.1 - 0.00023 21.1 17.9 0.00023 21.1 17.9 2.6 1 1 1 2 2 2 1 Ribosomal protein L41 CN_hydrolase PF00795.22 BAD86105.1 - 9.4e-60 202.1 0.0 1e-59 202.0 0.0 1.0 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase Methyltransf_25 PF13649.6 BAD86106.1 - 1.2e-10 42.0 0.0 2e-10 41.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 BAD86106.1 - 1.1e-05 25.3 0.0 1.4e-05 25.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 BAD86106.1 - 1.2e-05 24.9 0.1 2.2e-05 24.1 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.6 BAD86106.1 - 0.00024 20.9 0.0 0.00032 20.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 BAD86106.1 - 0.00058 19.3 0.0 0.00078 18.8 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_18 PF12847.7 BAD86106.1 - 0.00084 19.3 0.0 0.0015 18.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 BAD86106.1 - 0.0059 16.3 0.0 0.0089 15.7 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Met_10 PF02475.16 BAD86106.1 - 0.0083 15.9 0.0 0.017 14.8 0.0 1.5 1 1 0 1 1 1 1 Met-10+ like-protein Methyltransf_16 PF10294.9 BAD86106.1 - 0.049 13.4 0.0 0.078 12.7 0.0 1.3 1 0 0 1 1 1 0 Lysine methyltransferase Methyltransf_3 PF01596.17 BAD86106.1 - 0.05 12.8 0.0 0.077 12.2 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase ADH_zinc_N PF00107.26 BAD86106.1 - 0.053 13.5 0.0 0.081 12.9 0.0 1.4 1 0 0 1 1 1 0 Zinc-binding dehydrogenase PCMT PF01135.19 BAD86106.1 - 0.059 13.1 0.0 0.093 12.5 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_15 PF09445.10 BAD86106.1 - 0.12 11.9 0.0 0.17 11.5 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase RrnaAD PF00398.20 BAD86106.1 - 0.12 11.4 0.0 0.16 11.0 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase bPH_5 PF10882.8 BAD86108.1 - 0.053 13.6 0.0 6.9 6.8 0.0 2.2 2 0 0 2 2 2 0 Bacterial PH domain Sigma70_r4_2 PF08281.12 BAD86109.1 - 9e-05 22.1 0.0 0.00017 21.2 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_10 PF04967.12 BAD86109.1 - 0.00038 20.2 0.0 0.0013 18.5 0.1 1.8 2 0 0 2 2 2 1 HTH DNA binding domain HTH_23 PF13384.6 BAD86109.1 - 0.0018 18.0 0.1 0.003 17.3 0.1 1.3 1 0 0 1 1 1 1 Homeodomain-like domain HTH_7 PF02796.15 BAD86109.1 - 0.0027 17.8 0.0 0.0039 17.2 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_24 PF13412.6 BAD86109.1 - 0.0052 16.3 0.6 0.0093 15.5 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding Sigma70_ECF PF07638.11 BAD86109.1 - 0.0058 16.5 0.1 0.0076 16.2 0.1 1.1 1 0 0 1 1 1 1 ECF sigma factor MarR_2 PF12802.7 BAD86109.1 - 0.0069 16.2 0.1 0.016 15.1 0.0 1.6 2 0 0 2 2 2 1 MarR family Sigma70_r4 PF04545.16 BAD86109.1 - 0.007 15.9 0.1 0.012 15.2 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_29 PF13551.6 BAD86109.1 - 0.0094 16.0 0.2 0.015 15.3 0.2 1.3 1 0 0 1 1 1 1 Winged helix-turn helix HTH_11 PF08279.12 BAD86109.1 - 0.012 15.5 0.0 0.018 15.0 0.0 1.4 1 0 0 1 1 1 0 HTH domain DUF134 PF02001.16 BAD86109.1 - 0.02 15.5 0.0 0.032 14.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function DUF134 HTH_3 PF01381.22 BAD86109.1 - 0.021 14.8 0.0 0.036 14.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix HTH_Crp_2 PF13545.6 BAD86109.1 - 0.026 14.5 0.1 0.059 13.3 0.0 1.6 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain TrmB PF01978.19 BAD86109.1 - 0.066 13.1 0.0 0.14 12.1 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_26 PF13443.6 BAD86109.1 - 0.07 13.6 0.0 0.11 13.0 0.0 1.2 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain GntR PF00392.21 BAD86109.1 - 0.11 12.1 0.0 0.23 11.1 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family DUF2628 PF10947.8 BAD86110.1 - 0.43 11.0 8.2 0.21 12.0 2.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2628) DUF2065 PF09838.9 BAD86111.1 - 0.3 11.1 2.1 10 6.2 0.0 2.4 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2065) SdpI PF13630.6 BAD86111.1 - 0.45 10.7 2.8 0.47 10.6 0.1 2.1 1 1 1 2 2 2 0 SdpI/YhfL protein family DUF1648 PF07853.11 BAD86112.1 - 6.7e-17 60.9 0.2 6.7e-17 60.9 0.2 2.5 2 0 0 2 2 2 1 Protein of unknown function (DUF1648) SdpI PF13630.6 BAD86112.1 - 3.7e-12 46.2 3.2 3.7e-12 46.2 3.2 3.3 3 1 0 3 3 3 1 SdpI/YhfL protein family DUF4064 PF13273.6 BAD86112.1 - 0.089 13.1 0.4 0.089 13.1 0.4 3.5 2 2 1 3 3 3 0 Protein of unknown function (DUF4064) DUF3899 PF13038.6 BAD86112.1 - 0.16 12.5 0.2 0.16 12.5 0.2 3.6 2 1 1 3 3 3 0 Domain of unknown function (DUF3899) YwiC PF14256.6 BAD86112.1 - 4.3 7.7 13.8 0.12 12.7 2.0 2.7 2 1 0 2 2 2 0 YwiC-like protein PadR PF03551.14 BAD86113.1 - 9.7e-23 79.9 0.4 1.5e-22 79.3 0.4 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_34 PF13601.6 BAD86113.1 - 0.00016 21.8 0.0 0.00035 20.7 0.0 1.7 1 1 0 1 1 1 1 Winged helix DNA-binding domain DUF505 PF04458.12 BAD86113.1 - 0.0034 15.8 0.0 0.004 15.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF505) HxlR PF01638.17 BAD86113.1 - 0.033 14.0 0.1 0.045 13.6 0.1 1.4 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_27 PF13463.6 BAD86113.1 - 0.077 13.5 0.9 0.11 13.0 0.0 1.9 3 1 0 3 3 3 0 Winged helix DNA-binding domain YhfC PF10086.9 BAD86114.1 - 1e-13 51.2 12.7 1.3e-07 31.2 0.9 2.2 1 1 1 2 2 2 2 YhfC intramembrane metalloprotease NDUF_C2 PF06374.11 BAD86114.1 - 0.11 12.6 0.1 0.35 11.0 0.1 1.8 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase subunit b14.5b (NDUFC2) YbjQ_1 PF01906.17 BAD86115.1 - 8.9e-36 122.7 7.1 1e-35 122.5 7.1 1.0 1 0 0 1 1 1 1 Putative heavy-metal-binding DNA_binding_1 PF01035.20 BAD86115.1 - 0.05 13.7 0.4 0.65 10.2 0.1 2.2 1 1 1 2 2 2 0 6-O-methylguanine DNA methyltransferase, DNA binding domain DUF2065 PF09838.9 BAD86115.1 - 0.15 12.1 0.1 0.37 10.8 0.1 1.6 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2065) Peptidase_C92 PF05708.12 BAD86116.1 - 6.1e-41 140.3 0.0 7.5e-41 140.0 0.0 1.1 1 0 0 1 1 1 1 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family Diphthamide_syn PF01866.17 BAD86117.1 - 9.2e-79 265.0 0.0 1.1e-78 264.7 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein DUF1847 PF08901.11 BAD86117.1 - 0.019 14.6 0.2 0.93 9.1 0.0 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF1847) Hydrolase_6 PF13344.6 BAD86117.1 - 0.019 15.0 0.4 1.8 8.7 0.0 3.1 3 1 0 3 3 3 0 Haloacid dehalogenase-like hydrolase PrpR_N PF06506.11 BAD86117.1 - 0.07 12.7 0.2 2.2 7.8 0.0 2.6 1 1 1 2 2 2 0 Propionate catabolism activator Amdase PF17645.1 BAD86117.1 - 0.076 12.6 0.0 13 5.3 0.0 2.3 1 1 1 2 2 2 0 Arylmalonate decarboxylase DUF2007 PF09413.10 BAD86117.1 - 0.091 12.9 0.1 7.1 6.9 0.0 2.7 2 0 0 2 2 2 0 Putative prokaryotic signal transducing protein HEAT_2 PF13646.6 BAD86118.1 - 4.8e-07 30.1 7.1 0.013 15.9 0.0 4.7 3 2 1 4 4 4 2 HEAT repeats Adaptin_N PF01602.20 BAD86118.1 - 3.3e-05 22.6 3.6 0.0017 17.0 2.5 2.3 2 0 0 2 2 2 2 Adaptin N terminal region RTP1_C1 PF10363.9 BAD86118.1 - 0.00021 21.5 0.3 3 8.1 0.0 4.0 3 1 0 3 3 3 2 Required for nuclear transport of RNA pol II C-terminus 1 V-ATPase_H_C PF11698.8 BAD86118.1 - 0.01 16.0 1.4 0.37 10.9 0.7 3.4 4 0 0 4 4 4 0 V-ATPase subunit H PNISR PF15996.5 BAD86118.1 - 0.038 14.3 5.7 0.071 13.4 5.7 1.4 1 0 0 1 1 1 0 Arginine/serine-rich protein PNISR EF-hand_14 PF17959.1 BAD86118.1 - 0.048 14.0 0.5 3.3 8.1 0.0 3.5 4 0 0 4 4 4 0 EF-hand domain HEAT PF02985.22 BAD86118.1 - 2.1 8.8 4.8 41 4.8 0.1 4.1 5 0 0 5 5 5 0 HEAT repeat NitrOD5 PF11537.8 BAD86119.1 - 0.052 13.7 0.3 0.071 13.3 0.3 1.3 1 1 0 1 1 1 0 Nitrosopumilus output domain 5 NitrOD5 PF11537.8 BAD86120.1 - 3e-36 123.4 0.2 3.3e-36 123.3 0.2 1.0 1 0 0 1 1 1 1 Nitrosopumilus output domain 5 ATPase PF06745.13 BAD86121.1 - 1.1e-81 273.5 0.7 2.4e-49 167.8 0.0 2.4 2 1 0 2 2 2 2 KaiC AAA_25 PF13481.6 BAD86121.1 - 7.4e-21 74.6 0.0 2.1e-12 47.0 0.0 2.3 2 0 0 2 2 2 2 AAA domain RecA PF00154.21 BAD86121.1 - 1.6e-18 67.1 0.0 9e-12 45.0 0.0 2.3 2 0 0 2 2 2 2 recA bacterial DNA recombination protein DnaB_C PF03796.15 BAD86121.1 - 3.6e-17 62.5 0.1 1e-06 28.3 0.0 3.1 2 1 1 3 3 3 2 DnaB-like helicase C terminal domain AAA_22 PF13401.6 BAD86121.1 - 4.5e-13 49.6 0.0 1.8e-07 31.5 0.0 2.4 2 0 0 2 2 2 2 AAA domain GvpD PF07088.11 BAD86121.1 - 4.2e-12 45.5 1.1 6e-10 38.3 0.1 3.0 2 1 1 3 3 3 1 GvpD gas vesicle protein IstB_IS21 PF01695.17 BAD86121.1 - 5.1e-12 45.9 0.2 0.00012 21.9 0.0 2.5 3 0 0 3 3 2 2 IstB-like ATP binding protein Rad51 PF08423.11 BAD86121.1 - 1.8e-11 43.8 0.1 1.4e-06 27.8 0.1 2.6 2 1 0 2 2 2 2 Rad51 AAA_24 PF13479.6 BAD86121.1 - 2.8e-10 40.2 0.6 6.1e-06 26.1 0.1 3.3 2 2 0 2 2 2 2 AAA domain SRP54 PF00448.22 BAD86121.1 - 1.1e-09 38.3 0.0 2.2e-08 34.0 0.0 2.2 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain NACHT PF05729.12 BAD86121.1 - 1.7e-09 37.8 0.0 0.00013 22.0 0.0 2.5 2 1 0 2 2 2 2 NACHT domain DUF2075 PF09848.9 BAD86121.1 - 1.3e-08 34.5 0.9 0.0048 16.2 0.0 2.9 2 1 1 3 3 3 2 Uncharacterized conserved protein (DUF2075) AAA_16 PF13191.6 BAD86121.1 - 2.2e-08 34.7 0.0 0.0054 17.1 0.0 2.4 2 0 0 2 2 2 2 AAA ATPase domain ATPase_2 PF01637.18 BAD86121.1 - 6.8e-08 32.7 0.5 4.3e-05 23.6 0.1 2.5 2 1 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_10 PF12846.7 BAD86121.1 - 3.2e-07 29.6 0.1 0.00096 18.2 0.0 2.1 2 0 0 2 2 2 2 AAA-like domain ResIII PF04851.15 BAD86121.1 - 6.4e-07 29.5 0.1 0.00017 21.6 0.0 2.4 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_14 PF13173.6 BAD86121.1 - 6.7e-07 29.4 0.3 0.00026 21.0 0.1 3.1 2 2 0 2 2 2 1 AAA domain AAA PF00004.29 BAD86121.1 - 1.1e-06 29.1 0.5 0.028 14.8 0.1 2.8 2 2 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.27 BAD86121.1 - 4.5e-06 27.2 0.4 0.021 15.4 0.0 2.3 2 0 0 2 2 2 2 ABC transporter AAA_18 PF13238.6 BAD86121.1 - 4.6e-06 27.2 0.0 0.025 15.1 0.0 2.6 2 0 0 2 2 2 2 AAA domain TIP49 PF06068.13 BAD86121.1 - 5.7e-06 25.8 0.7 0.042 13.1 0.2 2.2 2 0 0 2 2 2 2 TIP49 P-loop domain T2SSE PF00437.20 BAD86121.1 - 7.1e-06 25.3 0.2 0.0018 17.4 0.0 2.2 2 0 0 2 2 2 1 Type II/IV secretion system protein PhoH PF02562.16 BAD86121.1 - 9.8e-06 25.2 0.9 0.0052 16.3 0.0 2.8 3 0 0 3 3 3 1 PhoH-like protein AAA_7 PF12775.7 BAD86121.1 - 1.2e-05 25.0 0.1 0.063 12.8 0.0 2.3 2 0 0 2 2 2 2 P-loop containing dynein motor region NTPase_1 PF03266.15 BAD86121.1 - 1.9e-05 24.6 3.8 0.61 10.0 1.0 3.8 2 2 0 2 2 2 2 NTPase CbiA PF01656.23 BAD86121.1 - 2.2e-05 24.5 2.1 0.00078 19.5 1.1 3.0 2 1 1 3 3 3 1 CobQ/CobB/MinD/ParA nucleotide binding domain Zeta_toxin PF06414.12 BAD86121.1 - 3.6e-05 23.1 0.4 0.033 13.5 0.0 2.3 2 0 0 2 2 2 2 Zeta toxin AAA_5 PF07728.14 BAD86121.1 - 5.4e-05 23.2 0.2 0.21 11.6 0.0 2.6 2 1 0 2 2 2 2 AAA domain (dynein-related subfamily) DEAD PF00270.29 BAD86121.1 - 5.7e-05 23.0 0.2 0.02 14.6 0.1 2.4 2 1 0 2 2 2 1 DEAD/DEAH box helicase AAA_11 PF13086.6 BAD86121.1 - 7.8e-05 22.6 0.0 0.19 11.5 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_30 PF13604.6 BAD86121.1 - 0.00011 21.9 0.0 0.03 14.1 0.0 2.4 2 1 0 2 2 2 1 AAA domain APS_kinase PF01583.20 BAD86121.1 - 0.00016 21.6 0.1 0.16 11.9 0.0 2.3 2 0 0 2 2 2 1 Adenylylsulphate kinase Sigma54_activat PF00158.26 BAD86121.1 - 0.00017 21.3 0.1 0.5 10.0 0.0 2.3 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_33 PF13671.6 BAD86121.1 - 0.0002 21.6 0.1 1 9.5 0.1 2.7 2 1 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 BAD86121.1 - 0.00021 20.7 0.4 0.46 9.8 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI KTI12 PF08433.10 BAD86121.1 - 0.00045 19.8 0.1 0.11 11.9 0.0 2.8 3 0 0 3 3 3 1 Chromatin associated protein KTI12 cobW PF02492.19 BAD86121.1 - 0.00052 19.7 1.8 0.71 9.4 0.1 2.4 2 1 0 2 2 2 2 CobW/HypB/UreG, nucleotide-binding domain RNA_helicase PF00910.22 BAD86121.1 - 0.00059 20.2 0.1 0.98 9.8 0.0 2.9 3 0 0 3 3 2 1 RNA helicase AAA_19 PF13245.6 BAD86121.1 - 0.00061 20.2 0.1 1.1 9.6 0.1 2.4 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 BAD86121.1 - 0.001 18.8 3.9 0.37 10.6 0.2 3.2 3 0 0 3 3 3 1 P-loop containing region of AAA domain AAA_31 PF13614.6 BAD86121.1 - 0.0012 18.8 0.3 0.0054 16.7 0.1 2.0 2 1 0 2 2 1 1 AAA domain RuvB_N PF05496.12 BAD86121.1 - 0.0012 18.6 1.0 1.6 8.5 0.0 2.9 2 1 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain CobU PF02283.16 BAD86121.1 - 0.0019 17.8 0.0 0.014 15.0 0.0 2.2 2 1 0 2 2 2 1 Cobinamide kinase / cobinamide phosphate guanyltransferase Elong_Iki1 PF10483.9 BAD86121.1 - 0.0031 17.1 0.0 0.26 10.8 0.0 2.1 2 0 0 2 2 2 1 Elongator subunit Iki1 PAXNEB PF05625.11 BAD86121.1 - 0.0033 16.6 3.7 0.82 8.7 0.3 2.2 2 0 0 2 2 2 2 PAXNEB protein SRPRB PF09439.10 BAD86121.1 - 0.0034 16.8 0.1 2.3 7.6 0.0 2.4 2 0 0 2 2 2 1 Signal recognition particle receptor beta subunit Torsin PF06309.11 BAD86121.1 - 0.0036 17.4 0.1 0.72 10.0 0.1 2.6 3 0 0 3 3 2 1 Torsin ATP-synt_ab PF00006.25 BAD86121.1 - 0.0038 16.9 0.0 1.6 8.4 0.0 2.2 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain MobB PF03205.14 BAD86121.1 - 0.0039 17.1 0.2 1.6 8.7 0.1 2.5 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B TsaE PF02367.17 BAD86121.1 - 0.0083 16.1 1.2 4.3 7.3 0.0 2.6 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Acetyltransf_18 PF18014.1 BAD86121.1 - 0.0086 15.9 0.0 0.017 15.0 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain PIF1 PF05970.14 BAD86121.1 - 0.014 14.6 0.3 0.31 10.2 0.0 2.2 2 0 0 2 2 2 0 PIF1-like helicase KdpD PF02702.17 BAD86121.1 - 0.016 14.7 0.0 4.9 6.6 0.0 2.5 2 0 0 2 2 2 0 Osmosensitive K+ channel His kinase sensor domain AAA_35 PF14516.6 BAD86121.1 - 0.017 13.9 0.0 2.2 7.0 0.0 2.2 2 0 0 2 2 2 0 AAA-like domain Zot PF05707.12 BAD86121.1 - 0.026 14.2 0.0 5 6.7 0.0 2.3 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) AAA_2 PF07724.14 BAD86121.1 - 0.034 14.3 0.0 0.44 10.6 0.0 2.3 2 0 0 2 2 2 0 AAA domain (Cdc48 subfamily) TrwB_AAD_bind PF10412.9 BAD86121.1 - 0.053 12.4 0.0 3.4 6.5 0.0 2.4 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain MeaB PF03308.16 BAD86121.1 - 0.058 12.4 0.4 4.4 6.2 0.1 2.9 2 1 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Viral_helicase1 PF01443.18 BAD86121.1 - 0.073 12.8 0.0 12 5.6 0.0 2.3 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase DUF853 PF05872.12 BAD86121.1 - 0.073 11.7 0.0 0.12 11.0 0.0 1.3 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF853) NB-ARC PF00931.22 BAD86121.1 - 0.076 12.2 0.6 9.1 5.4 0.1 2.3 2 0 0 2 2 2 0 NB-ARC domain AAA_28 PF13521.6 BAD86121.1 - 0.083 13.1 0.0 17 5.6 0.1 2.6 2 0 0 2 2 2 0 AAA domain Adeno_IVa2 PF02456.15 BAD86121.1 - 0.093 11.5 0.0 0.24 10.1 0.0 1.7 1 0 0 1 1 1 0 Adenovirus IVa2 protein ArsA_ATPase PF02374.15 BAD86121.1 - 0.1 11.7 0.4 0.55 9.4 0.1 2.1 1 1 1 2 2 2 0 Anion-transporting ATPase TK PF00265.18 BAD86121.1 - 0.13 12.1 0.0 0.78 9.6 0.0 2.1 2 0 0 2 2 2 0 Thymidine kinase Pox_A32 PF04665.12 BAD86121.1 - 0.15 11.5 0.8 4 6.8 0.1 2.4 2 0 0 2 2 2 0 Poxvirus A32 protein Glycos_transf_N PF04413.16 BAD86121.1 - 0.23 11.1 0.0 0.43 10.2 0.0 1.3 1 0 0 1 1 1 0 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AAA_23 PF13476.6 BAD86121.1 - 4.7 7.7 8.7 0.38 11.2 1.1 2.7 2 1 1 3 3 3 0 AAA domain MTS PF05175.14 BAD86122.1 - 9.1e-15 54.6 0.0 1.3e-14 54.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 BAD86122.1 - 2.6e-13 50.0 0.3 3.4e-13 49.6 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Cons_hypoth95 PF03602.15 BAD86122.1 - 1.8e-11 44.0 0.0 2.7e-11 43.4 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 UPF0020 PF01170.18 BAD86122.1 - 1.1e-10 41.6 0.1 1.7e-10 40.9 0.1 1.4 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_31 PF13847.6 BAD86122.1 - 8e-10 38.7 0.0 9e-10 38.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 BAD86122.1 - 5e-08 33.5 0.1 1.5e-07 32.0 0.0 1.8 1 1 1 2 2 2 1 Methyltransferase domain Met_10 PF02475.16 BAD86122.1 - 1.5e-07 31.3 0.4 4e-07 30.0 0.3 1.7 1 1 1 2 2 2 1 Met-10+ like-protein Methyltransf_15 PF09445.10 BAD86122.1 - 3.6e-06 26.6 0.0 5.1e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_18 PF12847.7 BAD86122.1 - 2.4e-05 24.3 0.1 3.9e-05 23.6 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 BAD86122.1 - 0.00019 22.0 0.0 0.00037 21.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_32 PF13679.6 BAD86122.1 - 0.0023 18.0 0.0 0.0029 17.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltr_RsmB-F PF01189.17 BAD86122.1 - 0.0029 17.3 0.0 0.0045 16.7 0.0 1.3 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltransf_3 PF01596.17 BAD86122.1 - 0.006 15.8 0.0 0.0077 15.4 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase RrnaAD PF00398.20 BAD86122.1 - 0.021 13.9 0.0 0.029 13.4 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_16 PF10294.9 BAD86122.1 - 0.029 14.1 0.2 0.051 13.3 0.2 1.4 1 0 0 1 1 1 0 Lysine methyltransferase N6_Mtase PF02384.16 BAD86122.1 - 0.066 12.5 0.0 0.1 11.9 0.0 1.3 1 0 0 1 1 1 0 N-6 DNA Methylase DNA_methylase PF00145.17 BAD86122.1 - 0.078 12.3 0.0 0.12 11.7 0.0 1.1 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase Methyltransf_24 PF13578.6 BAD86122.1 - 0.16 13.0 0.1 0.37 11.9 0.1 1.7 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_12 PF08242.12 BAD86122.1 - 0.16 12.7 0.0 0.24 12.1 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain PCMT PF01135.19 BAD86122.1 - 0.17 11.6 0.1 0.25 11.1 0.1 1.1 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltr_RsmB-F PF01189.17 BAD86124.1 - 6.3e-65 218.6 0.0 8.9e-65 218.1 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltransf_31 PF13847.6 BAD86124.1 - 2.5e-10 40.3 0.0 4.9e-10 39.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltr_RsmF_N PF17125.5 BAD86124.1 - 2.2e-09 37.7 0.0 5.7e-09 36.4 0.0 1.8 1 0 0 1 1 1 1 N-terminal domain of 16S rRNA methyltransferase RsmF FtsJ PF01728.19 BAD86124.1 - 8.8e-07 29.2 0.0 1.4e-06 28.5 0.0 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase Ubie_methyltran PF01209.18 BAD86124.1 - 5e-05 22.8 0.0 0.00071 19.0 0.0 2.1 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.6 BAD86124.1 - 0.0002 22.0 0.1 0.0035 18.0 0.0 2.4 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.14 BAD86124.1 - 0.0036 16.9 0.0 0.09 12.3 0.0 2.2 1 1 0 1 1 1 1 Methyltransferase small domain Fibrillarin PF01269.17 BAD86124.1 - 0.014 14.5 0.0 0.024 13.8 0.0 1.3 1 0 0 1 1 1 0 Fibrillarin Exonuc_VII_L PF02601.15 BAD86124.1 - 0.032 13.8 0.0 0.046 13.3 0.0 1.2 1 0 0 1 1 1 0 Exonuclease VII, large subunit NusB PF01029.18 BAD86124.1 - 0.044 14.0 0.0 0.096 12.9 0.0 1.5 1 0 0 1 1 1 0 NusB family Methyltransf_5 PF01795.19 BAD86124.1 - 0.049 13.1 0.0 0.67 9.4 0.0 2.1 2 0 0 2 2 2 0 MraW methylase family PCMT PF01135.19 BAD86124.1 - 0.052 13.3 0.0 0.12 12.1 0.0 1.6 2 0 0 2 2 2 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_23 PF13489.6 BAD86124.1 - 0.053 13.4 0.1 1.1 9.1 0.1 2.3 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_11 PF08241.12 BAD86124.1 - 0.056 14.1 0.0 7.3 7.3 0.0 2.6 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_12 PF08242.12 BAD86124.1 - 0.087 13.6 0.0 18 6.1 0.0 2.6 2 0 0 2 2 2 0 Methyltransferase domain PRA-PH PF01503.17 BAD86124.1 - 0.14 12.6 4.4 3.2 8.2 0.1 3.5 4 0 0 4 4 3 0 Phosphoribosyl-ATP pyrophosphohydrolase Methyltransf_24 PF13578.6 BAD86124.1 - 0.18 12.8 0.0 1.4 10.0 0.0 2.3 1 1 0 1 1 1 0 Methyltransferase domain DUF3801 PF12687.7 BAD86124.1 - 0.19 11.8 0.0 0.4 10.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3801) ABC_tran PF00005.27 BAD86125.1 - 4e-18 66.2 0.0 9.2e-18 65.1 0.0 1.6 1 1 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 BAD86125.1 - 4.1e-15 56.4 1.1 2.1e-07 31.0 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 BAD86125.1 - 8.7e-08 31.9 0.9 0.00028 20.4 0.3 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 BAD86125.1 - 9.3e-07 29.5 1.0 1.3e-06 29.1 0.2 1.5 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.6 BAD86125.1 - 4.3e-06 26.7 0.6 3e-05 23.9 0.5 2.0 1 1 1 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 BAD86125.1 - 3.8e-05 23.4 0.2 7.6e-05 22.4 0.2 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 BAD86125.1 - 0.0023 17.7 0.0 0.0053 16.5 0.0 1.6 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 BAD86125.1 - 0.0032 17.4 0.5 0.01 15.7 0.1 1.9 2 0 0 2 2 2 1 RsgA GTPase Adeno_IVa2 PF02456.15 BAD86125.1 - 0.0073 15.1 0.1 0.088 11.6 0.1 2.0 2 0 0 2 2 2 1 Adenovirus IVa2 protein AAA_16 PF13191.6 BAD86125.1 - 0.023 15.1 0.1 0.03 14.7 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.6 BAD86125.1 - 0.046 14.0 0.0 0.091 13.0 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_13 PF13166.6 BAD86125.1 - 0.14 10.8 0.0 8.3 4.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 BAD86125.1 - 0.19 11.6 0.2 0.76 9.7 0.1 1.8 2 0 0 2 2 2 0 NACHT domain ABC2_membrane_2 PF12679.7 BAD86127.1 - 5.3e-08 32.5 18.3 5.3e-08 32.5 18.3 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 BAD86127.1 - 2.5e-05 23.9 22.4 2.5e-05 23.9 22.4 1.8 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 BAD86127.1 - 0.0009 19.2 23.8 0.0012 18.9 21.6 1.9 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 BAD86127.1 - 0.018 14.2 25.3 0.023 13.8 24.9 1.3 1 1 0 1 1 1 0 ABC-2 family transporter protein MS_channel PF00924.18 BAD86129.1 - 2.1e-59 200.5 0.1 2.1e-59 200.5 0.1 1.8 3 0 0 3 3 3 1 Mechanosensitive ion channel TM_helix PF05552.12 BAD86129.1 - 3.1e-05 23.9 3.9 0.0034 17.3 1.1 2.9 3 0 0 3 3 3 2 Conserved TM helix DUF432 PF04254.13 BAD86130.1 - 2.4e-26 92.3 0.0 4.8e-26 91.3 0.0 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF432) Imm-NTF2-2 PF15631.6 BAD86131.1 - 0.069 13.4 0.1 0.19 12.0 0.1 1.8 1 0 0 1 1 1 0 NTF2 fold immunity protein DUF5616 PF18481.1 BAD86132.1 - 3.6e-41 140.8 0.0 5.9e-41 140.1 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF5616) DUF434 PF04256.12 BAD86132.1 - 5.7e-26 90.0 4.9 7.8e-25 86.3 2.3 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF434) HD PF01966.22 BAD86133.1 - 8.1e-05 22.8 0.0 0.00015 21.9 0.0 1.5 1 1 0 1 1 1 1 HD domain PIN_9 PF18477.1 BAD86134.1 - 7.8e-34 116.5 0.3 9.1e-34 116.2 0.3 1.0 1 0 0 1 1 1 1 PIN like domain Fcf1 PF04900.12 BAD86134.1 - 5.7e-07 29.9 0.0 7.4e-07 29.5 0.0 1.1 1 0 0 1 1 1 1 Fcf1 PIN_4 PF13638.6 BAD86134.1 - 4.3e-05 23.8 0.4 0.0023 18.2 0.4 2.2 1 1 0 1 1 1 1 PIN domain DUF5615 PF18480.1 BAD86134.1 - 0.0015 18.2 0.0 0.0027 17.4 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF5615) PIN_12 PF16289.5 BAD86134.1 - 0.047 14.2 0.1 0.17 12.4 0.0 1.8 1 1 1 2 2 2 0 PIN domain GTP_EFTU PF00009.27 BAD86135.1 - 1.4e-37 129.2 0.9 8.6e-37 126.6 0.9 1.9 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.11 BAD86135.1 - 1.7e-31 108.3 0.3 4.8e-31 106.8 0.2 1.9 2 0 0 2 2 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.25 BAD86135.1 - 2.3e-11 43.9 1.4 7.2e-11 42.3 1.4 2.0 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 BAD86135.1 - 6.3e-06 26.3 0.0 1.1e-05 25.5 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 BAD86135.1 - 0.00032 20.6 0.1 0.0046 16.9 0.0 2.2 2 0 0 2 2 2 1 RsgA GTPase RecR PF02132.15 BAD86135.1 - 0.00048 19.6 0.5 0.00089 18.8 0.5 1.4 1 0 0 1 1 1 1 RecR protein zf-ribbon_3 PF13248.6 BAD86135.1 - 0.00064 19.0 4.0 0.0013 18.1 4.0 1.5 1 0 0 1 1 1 1 zinc-ribbon domain Nop10p PF04135.12 BAD86135.1 - 0.00065 19.7 0.6 0.0012 18.9 0.6 1.4 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family PolC_DP2 PF03833.13 BAD86135.1 - 0.0036 15.2 0.0 0.0045 14.9 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase II large subunit DP2 PduV-EutP PF10662.9 BAD86135.1 - 0.0037 17.0 0.3 0.44 10.3 0.0 2.3 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation zinc_ribbon_2 PF13240.6 BAD86135.1 - 0.01 15.5 7.2 0.023 14.4 7.2 1.6 1 0 0 1 1 1 0 zinc-ribbon domain FeoB_N PF02421.18 BAD86135.1 - 0.017 14.7 1.5 1.8 8.0 0.3 2.5 2 1 0 2 2 2 0 Ferrous iron transport protein B DUF35_N PF12172.8 BAD86135.1 - 0.042 13.7 2.1 0.08 12.8 2.1 1.5 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) HypA PF01155.19 BAD86135.1 - 0.057 13.4 0.1 0.15 12.1 0.1 1.6 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA G-alpha PF00503.20 BAD86135.1 - 0.09 11.9 0.1 0.15 11.2 0.1 1.3 1 0 0 1 1 1 0 G-protein alpha subunit NRDD PF13597.6 BAD86135.1 - 0.14 11.0 0.2 0.22 10.3 0.2 1.3 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase Zn-ribbon_8 PF09723.10 BAD86135.1 - 0.19 11.8 3.9 3.2 8.0 0.3 2.5 1 1 2 3 3 3 0 Zinc ribbon domain zf-NADH-PPase PF09297.11 BAD86135.1 - 0.24 11.1 3.3 1.1 9.0 0.3 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain MeaB PF03308.16 BAD86135.1 - 0.27 10.2 2.4 0.9 8.5 0.0 2.7 3 0 0 3 3 3 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Zn_Tnp_IS1595 PF12760.7 BAD86135.1 - 0.47 10.5 7.0 2.7 8.0 0.6 2.3 1 1 1 2 2 2 0 Transposase zinc-ribbon domain UPF0547 PF10571.9 BAD86135.1 - 0.64 10.2 7.1 7.9 6.7 0.9 2.5 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-tcix PF14952.6 BAD86135.1 - 1.3 8.7 4.1 0.53 9.9 0.3 2.0 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Cys_rich_CPXG PF14255.6 BAD86135.1 - 4.1 7.4 8.3 2.6 8.0 0.9 2.4 1 1 1 2 2 2 0 Cysteine-rich CPXCG TF_Zn_Ribbon PF08271.12 BAD86135.1 - 4.6 6.8 6.4 76 2.9 6.4 2.3 1 1 0 1 1 1 0 TFIIB zinc-binding Lar_restr_allev PF14354.6 BAD86135.1 - 4.8 7.6 5.1 33 4.9 0.7 2.3 1 1 1 2 2 2 0 Restriction alleviation protein Lar MIG-14_Wnt-bd PF06664.12 BAD86137.1 - 0.23 10.6 1.3 0.27 10.4 1.3 1.2 1 0 0 1 1 1 0 Wnt-binding factor required for Wnt secretion ABC2_membrane_3 PF12698.7 BAD86137.1 - 1.5 7.8 15.5 2.6 7.1 15.5 1.3 1 1 0 1 1 1 0 ABC-2 family transporter protein TcfC PF16967.5 BAD86139.1 - 0.057 12.9 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 E-set like domain Ribosomal_S6e PF01092.19 BAD86140.1 - 2.7e-38 130.8 0.0 1.2e-37 128.6 0.0 1.8 1 1 0 1 1 1 1 Ribosomal protein S6e Sec61_beta PF03911.16 BAD86141.1 - 2.7e-16 59.3 0.1 3.2e-16 59.1 0.1 1.1 1 0 0 1 1 1 1 Sec61beta family UPF0242 PF06785.11 BAD86142.1 - 2.1e-05 24.7 6.4 2.8e-05 24.3 6.4 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0242) N-terminus CENP-H PF05837.12 BAD86142.1 - 6.7e-05 23.3 5.0 0.00011 22.6 5.0 1.3 1 0 0 1 1 1 1 Centromere protein H (CENP-H) GAS PF13851.6 BAD86142.1 - 0.00018 21.0 13.0 0.00026 20.4 13.0 1.3 1 0 0 1 1 1 1 Growth-arrest specific micro-tubule binding PRC PF05239.16 BAD86142.1 - 0.00094 19.2 1.2 0.002 18.2 1.2 1.6 1 0 0 1 1 1 1 PRC-barrel domain DUF812 PF05667.11 BAD86142.1 - 0.0016 17.4 3.6 0.0019 17.2 3.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF812) FTA4 PF13093.6 BAD86142.1 - 0.0018 18.2 3.4 0.0023 17.9 3.4 1.2 1 0 0 1 1 1 1 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 Taxilin PF09728.9 BAD86142.1 - 0.0019 17.5 9.1 0.0025 17.1 9.1 1.2 1 0 0 1 1 1 1 Myosin-like coiled-coil protein Phage_GP20 PF06810.11 BAD86142.1 - 0.0024 17.7 9.1 0.078 12.8 3.0 2.4 1 1 1 2 2 2 2 Phage minor structural protein GP20 KASH_CCD PF14662.6 BAD86142.1 - 0.0027 17.6 16.0 0.005 16.7 16.0 1.4 1 1 0 1 1 1 1 Coiled-coil region of CCDC155 or KASH Cast PF10174.9 BAD86142.1 - 0.005 15.1 9.0 0.0066 14.7 9.0 1.1 1 0 0 1 1 1 1 RIM-binding protein of the cytomatrix active zone Spc7 PF08317.11 BAD86142.1 - 0.0097 14.8 14.0 0.013 14.4 14.0 1.1 1 0 0 1 1 1 1 Spc7 kinetochore protein GIT_CC PF16559.5 BAD86142.1 - 0.018 14.9 5.9 0.14 12.1 5.5 2.3 1 1 1 2 2 2 0 GIT coiled-coil Rho guanine nucleotide exchange factor Gp-FAR-1 PF05823.12 BAD86142.1 - 0.025 15.0 3.6 0.04 14.3 3.6 1.3 1 0 0 1 1 1 0 Nematode fatty acid retinoid binding protein (Gp-FAR-1) Prominin PF05478.11 BAD86142.1 - 0.033 12.2 0.9 0.041 11.9 0.9 1.1 1 0 0 1 1 1 0 Prominin MPS2 PF17060.5 BAD86142.1 - 0.05 12.9 7.6 0.065 12.5 7.6 1.1 1 0 0 1 1 1 0 Monopolar spindle protein 2 MAGSP PF03082.14 BAD86142.1 - 0.076 12.6 0.4 0.14 11.8 0.3 1.5 1 1 1 2 2 2 0 Male accessory gland secretory protein SHE3 PF17078.5 BAD86142.1 - 0.078 12.7 10.3 0.12 12.1 10.3 1.2 1 0 0 1 1 1 0 SWI5-dependent HO expression protein 3 Cnn_1N PF07989.11 BAD86142.1 - 0.086 13.0 10.8 0.094 12.9 7.5 2.6 1 1 1 2 2 2 0 Centrosomin N-terminal motif 1 V_ATPase_I PF01496.19 BAD86142.1 - 0.096 10.6 1.4 0.11 10.4 1.4 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family XRCC4 PF06632.12 BAD86142.1 - 0.098 11.5 8.7 0.45 9.3 6.7 2.2 2 0 0 2 2 2 0 DNA double-strand break repair and V(D)J recombination protein XRCC4 Exonuc_VII_L PF02601.15 BAD86142.1 - 0.1 12.2 0.7 0.12 12.0 0.7 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit SlyX PF04102.12 BAD86142.1 - 0.13 12.8 11.3 0.15 12.7 2.4 3.0 1 1 1 2 2 2 0 SlyX MoCF_biosynth PF00994.24 BAD86142.1 - 0.14 11.8 0.1 0.38 10.4 0.1 1.7 1 1 0 1 1 1 0 Probable molybdopterin binding domain TMPIT PF07851.13 BAD86142.1 - 0.15 11.3 4.6 0.19 10.9 4.6 1.2 1 0 0 1 1 1 0 TMPIT-like protein HMMR_C PF15908.5 BAD86142.1 - 0.17 12.2 8.0 0.22 11.8 7.2 1.6 1 1 0 1 1 1 0 Hyaluronan mediated motility receptor C-terminal GrpE PF01025.19 BAD86142.1 - 0.24 11.0 8.7 0.43 10.2 8.7 1.4 1 0 0 1 1 1 0 GrpE Fmp27_WPPW PF10359.9 BAD86142.1 - 0.3 9.9 5.6 0.39 9.5 5.6 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain RFC1 PF08519.12 BAD86142.1 - 0.4 10.8 2.3 0.62 10.2 2.0 1.5 1 1 0 1 1 1 0 Replication factor RFC1 C terminal domain ATP-synt_E PF05680.12 BAD86142.1 - 0.45 10.9 5.9 0.83 10.0 5.9 1.4 1 0 0 1 1 1 0 ATP synthase E chain BLOC1_2 PF10046.9 BAD86142.1 - 0.45 10.8 9.9 3.2 8.1 4.1 2.5 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 IFP_35_N PF07334.13 BAD86142.1 - 0.45 10.6 9.7 0.062 13.4 5.5 1.8 2 0 0 2 2 1 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus YabA PF06156.13 BAD86142.1 - 0.49 11.1 11.8 0.7 10.6 10.1 2.0 1 1 1 2 2 2 0 Initiation control protein YabA ERM PF00769.19 BAD86142.1 - 0.57 10.0 14.7 0.78 9.5 14.7 1.2 1 0 0 1 1 1 0 Ezrin/radixin/moesin family Rx_N PF18052.1 BAD86142.1 - 0.59 10.5 9.3 21 5.5 6.2 2.7 1 1 1 2 2 2 0 Rx N-terminal domain PRKG1_interact PF15898.5 BAD86142.1 - 0.73 10.8 13.2 1.9 9.4 10.5 2.4 1 1 1 2 2 2 0 cGMP-dependent protein kinase interacting domain Atg14 PF10186.9 BAD86142.1 - 0.73 8.9 9.4 3 6.9 9.5 1.7 1 1 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 USP8_interact PF08941.10 BAD86142.1 - 0.77 9.5 3.8 0.94 9.3 1.1 1.9 1 1 1 2 2 2 0 USP8 interacting DUF2570 PF10828.8 BAD86142.1 - 0.8 9.6 5.9 0.76 9.6 4.2 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF2570) OmpH PF03938.14 BAD86142.1 - 0.9 9.9 9.9 1.7 8.9 9.9 1.5 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) Fib_alpha PF08702.10 BAD86142.1 - 1 9.5 5.2 1.9 8.7 5.2 1.4 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family DUF745 PF05335.13 BAD86142.1 - 1.1 9.0 3.4 1.8 8.3 3.3 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF745) DUF1664 PF07889.12 BAD86142.1 - 1.1 9.3 4.5 4.5 7.3 2.2 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) HMMR_N PF15905.5 BAD86142.1 - 1.1 8.6 14.5 1.6 8.1 14.5 1.2 1 0 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal FapA PF03961.13 BAD86142.1 - 1.3 7.5 11.3 1.8 7.1 11.1 1.5 1 1 0 1 1 1 0 Flagellar Assembly Protein A DivIVA PF05103.13 BAD86142.1 - 1.7 8.8 11.6 8.3 6.5 10.3 2.4 1 1 0 1 1 1 0 DivIVA protein DUF3450 PF11932.8 BAD86142.1 - 1.7 7.9 12.5 13 5.0 12.5 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF3450) Ead_Ea22 PF13935.6 BAD86142.1 - 1.8 9.2 10.0 2.1 9.0 7.5 2.0 1 1 1 2 2 2 0 Ead/Ea22-like protein zf-C4H2 PF10146.9 BAD86142.1 - 2.5 8.3 13.3 3.5 7.9 13.3 1.1 1 0 0 1 1 1 0 Zinc finger-containing protein eIF-4B PF06273.11 BAD86142.1 - 3 6.8 4.2 3.6 6.5 4.2 1.1 1 0 0 1 1 1 0 Plant specific eukaryotic initiation factor 4B DUF5595 PF18077.1 BAD86142.1 - 3.6 7.7 12.9 0.94 9.6 6.6 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF5595) DUF724 PF05266.14 BAD86142.1 - 3.6 7.4 10.7 6.7 6.5 10.7 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF724) PCRF PF03462.18 BAD86142.1 - 5.2 6.9 12.1 3.5 7.4 8.4 2.2 2 1 0 2 2 2 0 PCRF domain DASH_Spc34 PF08657.10 BAD86142.1 - 5.2 6.8 10.6 31 4.2 10.6 1.9 1 1 0 1 1 1 0 DASH complex subunit Spc34 DUF2203 PF09969.9 BAD86142.1 - 5.8 7.7 7.6 63 4.3 7.6 2.1 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) Ly49 PF08391.10 BAD86142.1 - 6.5 7.1 7.7 2.8 8.3 1.9 2.2 1 1 1 2 2 2 0 Ly49-like protein, N-terminal region APG6_N PF17675.1 BAD86142.1 - 9.7 6.7 19.2 7.9 7.0 17.7 1.5 1 1 0 1 1 1 0 Apg6 coiled-coil region MMR_HSR1 PF01926.23 BAD86143.1 - 4.2e-18 65.5 0.0 5.7e-18 65.1 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 BAD86143.1 - 5.7e-13 48.7 0.0 6.9e-12 45.2 0.0 2.0 1 1 0 1 1 1 1 Ferrous iron transport protein B RsgA_GTPase PF03193.16 BAD86143.1 - 2.3e-06 27.6 0.2 0.0097 15.8 0.1 2.6 2 1 0 2 2 2 2 RsgA GTPase GTP_EFTU PF00009.27 BAD86143.1 - 5.5e-06 26.0 0.0 0.00027 20.5 0.0 2.2 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain Dynamin_N PF00350.23 BAD86143.1 - 0.00091 19.3 0.0 0.0017 18.5 0.0 1.6 1 1 0 1 1 1 1 Dynamin family MMR_HSR1_Xtn PF16897.5 BAD86143.1 - 0.0039 17.2 0.2 0.009 16.0 0.0 1.6 2 0 0 2 2 2 1 C-terminal region of MMR_HSR1 domain SRPRB PF09439.10 BAD86143.1 - 0.042 13.3 0.0 0.078 12.4 0.0 1.6 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit Roc PF08477.13 BAD86143.1 - 0.055 13.7 0.3 0.33 11.2 0.0 2.2 2 1 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase Ras PF00071.22 BAD86143.1 - 0.11 12.1 0.1 1.2 8.7 0.0 2.1 2 0 0 2 2 2 0 Ras family MobB PF03205.14 BAD86143.1 - 0.13 12.2 0.0 0.19 11.6 0.0 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_18 PF13238.6 BAD86143.1 - 0.13 12.8 0.2 0.75 10.3 0.2 2.2 1 1 1 2 2 2 0 AAA domain MeaB PF03308.16 BAD86143.1 - 0.19 10.7 0.6 2.1 7.3 0.2 2.1 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AsnC_trans_reg PF01037.21 BAD86144.1 - 5.1e-09 36.0 0.1 9.3e-09 35.1 0.1 1.5 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain MarR_2 PF12802.7 BAD86144.1 - 1.2e-07 31.5 0.0 2.6e-07 30.4 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 BAD86144.1 - 1.8e-07 31.0 1.2 8.1e-07 28.9 0.2 2.2 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_5 PF01022.20 BAD86144.1 - 6.8e-07 29.1 1.0 2.7e-06 27.1 1.0 2.0 1 1 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 BAD86144.1 - 8.5e-07 28.4 0.6 3.3e-06 26.6 0.1 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 BAD86144.1 - 6.2e-06 26.2 0.1 1.5e-05 24.9 0.1 1.8 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 BAD86144.1 - 1.6e-05 24.7 3.3 3.7e-05 23.6 0.9 2.7 2 2 0 2 2 2 1 HTH domain HTH_10 PF04967.12 BAD86144.1 - 5.6e-05 22.9 1.1 0.0096 15.7 0.1 3.1 3 0 0 3 3 3 1 HTH DNA binding domain MarR PF01047.22 BAD86144.1 - 0.00019 21.3 0.3 0.00057 19.8 0.3 1.8 1 1 0 1 1 1 1 MarR family HTH_34 PF13601.6 BAD86144.1 - 0.00073 19.7 0.0 0.0014 18.7 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain ssDNA-exonuc_C PF10141.9 BAD86144.1 - 0.0017 18.0 0.0 0.006 16.2 0.0 1.7 2 0 0 2 2 2 1 Single-strand DNA-specific exonuclease, C terminal domain TrmB PF01978.19 BAD86144.1 - 0.0019 18.1 0.6 0.076 12.9 0.0 2.7 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB LexA_DNA_bind PF01726.16 BAD86144.1 - 0.0022 17.7 0.1 0.0059 16.4 0.1 1.7 1 0 0 1 1 1 1 LexA DNA binding domain Sigma70_r4 PF04545.16 BAD86144.1 - 0.0057 16.2 0.1 0.024 14.2 0.1 2.1 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_36 PF13730.6 BAD86144.1 - 0.0063 16.4 1.5 0.025 14.5 0.1 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_3 PF01381.22 BAD86144.1 - 0.016 15.2 0.1 0.05 13.7 0.1 1.9 1 0 0 1 1 1 0 Helix-turn-helix Radical_SAM PF04055.21 BAD86144.1 - 0.016 15.6 1.2 0.47 10.8 0.2 2.0 1 1 1 2 2 2 0 Radical SAM superfamily HTH_28 PF13518.6 BAD86144.1 - 0.017 15.2 0.0 0.61 10.3 0.0 2.9 2 1 1 3 3 3 0 Helix-turn-helix domain Rrf2 PF02082.20 BAD86144.1 - 0.021 15.2 0.1 0.063 13.6 0.1 1.8 1 0 0 1 1 1 0 Transcriptional regulator HTH_27 PF13463.6 BAD86144.1 - 0.032 14.7 0.3 0.065 13.7 0.1 1.8 2 0 0 2 2 1 0 Winged helix DNA-binding domain Homeodomain PF00046.29 BAD86144.1 - 0.038 13.8 0.1 0.12 12.2 0.1 1.9 2 0 0 2 2 2 0 Homeodomain HTH_Mga PF08280.11 BAD86144.1 - 0.044 13.8 2.3 0.11 12.6 1.3 2.1 2 1 0 2 2 2 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_IclR PF09339.10 BAD86144.1 - 0.059 13.2 0.2 0.55 10.1 0.1 2.4 3 0 0 3 3 2 0 IclR helix-turn-helix domain NapD PF03927.13 BAD86144.1 - 0.077 13.1 0.1 0.38 10.8 0.1 2.1 2 1 0 2 2 2 0 NapD protein ACT PF01842.25 BAD86144.1 - 0.12 12.1 0.1 22 5.0 0.0 2.5 2 0 0 2 2 2 0 ACT domain CLP1_P PF16575.5 BAD86145.1 - 2.6e-38 131.7 0.0 3.5e-38 131.3 0.0 1.2 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop CbiA PF01656.23 BAD86145.1 - 0.0077 16.3 0.1 0.016 15.2 0.1 1.6 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MeaB PF03308.16 BAD86145.1 - 0.013 14.5 1.3 0.027 13.5 1.2 1.5 1 1 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB SRP54 PF00448.22 BAD86145.1 - 0.018 14.7 0.3 4 7.0 0.0 2.2 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain MobB PF03205.14 BAD86145.1 - 0.021 14.7 0.0 0.075 12.9 0.0 1.9 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B MMR_HSR1 PF01926.23 BAD86145.1 - 0.026 14.6 0.2 4.1 7.5 0.1 2.4 2 0 0 2 2 2 0 50S ribosome-binding GTPase MipZ PF09140.11 BAD86145.1 - 0.027 13.8 0.1 0.087 12.1 0.1 1.7 1 1 0 1 1 1 0 ATPase MipZ APS_kinase PF01583.20 BAD86145.1 - 0.059 13.3 0.3 0.61 10.0 0.0 2.1 2 0 0 2 2 2 0 Adenylylsulphate kinase NTPase_1 PF03266.15 BAD86145.1 - 0.11 12.4 0.6 0.59 10.0 0.5 2.2 2 1 0 2 2 2 0 NTPase AAA_29 PF13555.6 BAD86145.1 - 0.17 11.6 0.1 1.5 8.6 0.1 2.2 2 0 0 2 2 2 0 P-loop containing region of AAA domain Septin PF00735.18 BAD86145.1 - 0.26 10.5 0.2 0.48 9.7 0.2 1.3 1 0 0 1 1 1 0 Septin UbiA PF01040.18 BAD86146.1 - 4.3e-47 160.5 20.0 5.9e-47 160.1 20.0 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family Phage_TTP_13 PF16463.5 BAD86146.1 - 0.095 12.2 0.1 0.33 10.5 0.0 1.8 2 0 0 2 2 2 0 Phage tail tube protein family Nrf1_DNA-bind PF10491.9 BAD86147.1 - 0.079 12.6 0.1 0.11 12.2 0.1 1.1 1 0 0 1 1 1 0 NLS-binding and DNA-binding and dimerisation domains of Nrf1 tRNA_anti-codon PF01336.25 BAD86148.1 - 9.8e-09 35.1 1.7 2.5e-08 33.8 1.7 1.7 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain RPA_C PF08784.11 BAD86148.1 - 0.0087 16.7 0.0 0.015 15.9 0.0 1.3 1 0 0 1 1 1 1 Replication protein A C terminal RMI2 PF16100.5 BAD86148.1 - 0.01 15.6 0.0 0.018 14.8 0.0 1.4 1 0 0 1 1 1 0 RecQ-mediated genome instability protein 2 HTH_12 PF08461.10 BAD86148.1 - 0.032 14.2 0.2 0.085 12.8 0.2 1.7 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain TBPIP PF07106.13 BAD86148.1 - 0.056 13.4 0.2 0.13 12.2 0.0 1.7 2 0 0 2 2 2 0 TBPIP/Hop2 winged helix domain CaMBD PF02888.16 BAD86148.1 - 0.1 12.8 0.1 1.3 9.2 0.1 2.4 1 1 0 1 1 1 0 Calmodulin binding domain DUF4530 PF15039.6 BAD86148.1 - 1.6 8.9 8.1 3 8.0 8.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4530) BOF PF04076.13 BAD86149.1 - 0.00058 19.9 0.9 0.0013 18.8 0.9 1.6 1 1 0 1 1 1 1 Bacterial OB fold (BOF) protein RMI2 PF16100.5 BAD86149.1 - 0.0017 18.2 0.0 0.0019 18.0 0.0 1.2 1 0 0 1 1 1 1 RecQ-mediated genome instability protein 2 Rep_fac-A_3 PF08661.11 BAD86149.1 - 0.0056 17.0 0.0 0.0073 16.6 0.0 1.1 1 0 0 1 1 1 1 Replication factor A protein 3 Stn1 PF10451.9 BAD86149.1 - 0.044 12.8 0.2 0.058 12.4 0.2 1.1 1 0 0 1 1 1 0 Telomere regulation protein Stn1 tRNA_anti-codon PF01336.25 BAD86149.1 - 0.09 12.8 2.2 0.43 10.6 1.9 2.2 1 1 0 1 1 1 0 OB-fold nucleic acid binding domain tRNA_anti-codon PF01336.25 BAD86150.1 - 7.7e-14 51.5 0.3 3.1e-11 43.1 0.1 2.6 2 0 0 2 2 2 2 OB-fold nucleic acid binding domain Rep_fac-A_C PF08646.10 BAD86150.1 - 3.1e-07 30.2 0.0 6.2e-07 29.3 0.0 1.5 1 0 0 1 1 1 1 Replication factor-A C terminal domain CDC24_OB3 PF17244.2 BAD86150.1 - 0.00013 21.7 0.0 0.0004 20.2 0.0 1.7 2 0 0 2 2 2 1 Cell division control protein 24, OB domain 3 DUF2240 PF09999.9 BAD86150.1 - 0.0069 16.0 0.3 0.014 15.1 0.3 1.5 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2240) DUF5521 PF17659.1 BAD86150.1 - 0.0071 14.3 0.0 0.0089 13.9 0.0 1.1 1 0 0 1 1 1 1 Family of unknown function (DUF5521) DUF2396 PF09654.10 BAD86150.1 - 0.029 14.5 0.0 0.065 13.3 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2396) SPAM PF02090.15 BAD86150.1 - 0.097 12.5 1.1 9.9 6.0 0.1 2.3 2 0 0 2 2 2 0 Salmonella surface presentation of antigen gene type M protein DUF148 PF02520.17 BAD86150.1 - 0.13 12.3 0.0 0.27 11.3 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function DUF148 REPA_OB_2 PF16900.5 BAD86150.1 - 0.18 11.8 0.0 16 5.5 0.0 2.4 2 0 0 2 2 2 0 Replication protein A OB domain RHH_1 PF01402.21 BAD86150.1 - 0.97 9.5 7.0 1.6 8.8 1.2 3.4 2 1 1 3 3 3 0 Ribbon-helix-helix protein, copG family SMC_ScpB PF04079.16 BAD86151.1 - 2.1e-36 124.9 2.3 3.1e-36 124.4 1.1 1.7 2 0 0 2 2 2 1 Segregation and condensation complex subunit ScpB HTH_27 PF13463.6 BAD86151.1 - 0.0019 18.6 0.8 0.23 12.0 0.1 2.7 2 1 0 2 2 2 1 Winged helix DNA-binding domain TrmB PF01978.19 BAD86151.1 - 0.0045 16.8 2.4 0.018 14.9 0.1 2.7 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 BAD86151.1 - 0.014 15.2 0.1 0.81 9.6 0.0 2.6 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.19 BAD86151.1 - 0.021 15.0 0.3 0.17 12.1 0.1 2.2 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_24 PF13412.6 BAD86151.1 - 0.039 13.5 0.1 3.3 7.4 0.1 2.5 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 BAD86151.1 - 0.087 12.9 0.1 2.6 8.2 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_IclR PF09339.10 BAD86151.1 - 0.13 12.0 0.0 20 5.0 0.0 2.5 2 0 0 2 2 2 0 IclR helix-turn-helix domain RHH_3 PF12651.7 BAD86151.1 - 0.19 11.7 2.7 0.51 10.3 2.7 1.7 1 0 0 1 1 1 0 Ribbon-helix-helix domain malic PF00390.19 BAD86152.1 - 2.7e-30 105.5 0.6 5.6e-28 98.0 0.6 2.5 1 1 0 1 1 1 1 Malic enzyme, N-terminal domain Malic_M PF03949.15 BAD86152.1 - 9.4e-27 93.9 3.1 6.7e-26 91.1 3.1 2.2 1 1 0 1 1 1 1 Malic enzyme, NAD binding domain ELFV_dehydrog PF00208.21 BAD86152.1 - 0.0013 18.5 1.1 0.0026 17.5 1.1 1.5 1 1 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ThiF PF00899.21 BAD86152.1 - 0.0042 16.5 1.0 0.0077 15.6 1.0 1.4 1 0 0 1 1 1 1 ThiF family Shikimate_DH PF01488.20 BAD86152.1 - 0.01 15.9 0.7 0.018 15.1 0.2 1.7 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase FAD_binding_3 PF01494.19 BAD86152.1 - 0.069 12.4 0.4 0.1 11.8 0.4 1.2 1 0 0 1 1 1 0 FAD binding domain 2-Hacid_dh_C PF02826.19 BAD86152.1 - 0.14 11.5 4.3 0.058 12.7 0.8 2.2 2 1 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 BAD86152.1 - 0.23 10.8 4.0 0.38 10.0 4.0 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox_3 PF13738.6 BAD86152.1 - 0.33 10.2 2.5 1.2 8.4 1.9 1.9 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Fumerase_C PF05683.12 BAD86153.1 - 1.7e-41 141.8 0.0 2.1e-41 141.5 0.0 1.1 1 0 0 1 1 1 1 Fumarase C-terminus SH3_9 PF14604.6 BAD86153.1 - 0.094 12.6 0.0 1.5 8.8 0.0 2.3 2 0 0 2 2 2 0 Variant SH3 domain Fumerase PF05681.14 BAD86154.1 - 9.1e-94 313.9 0.0 1e-93 313.7 0.0 1.0 1 0 0 1 1 1 1 Fumarate hydratase (Fumerase) BppU_IgG PF18667.1 BAD86154.1 - 0.013 15.7 0.0 0.025 14.7 0.0 1.4 1 0 0 1 1 1 0 Baseplate upper protein immunoglobulin like domain 2-Hacid_dh_C PF02826.19 BAD86155.1 - 4.2e-73 244.5 0.1 1e-72 243.3 0.0 1.6 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 BAD86155.1 - 1.2e-40 138.2 0.3 1.4e-40 138.0 0.3 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 BAD86155.1 - 2.4e-06 27.8 0.1 8.8e-06 26.0 0.0 1.9 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase AlaDh_PNT_C PF01262.21 BAD86155.1 - 3.7e-05 23.1 0.4 9.5e-05 21.8 0.1 1.8 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain IlvN PF07991.12 BAD86155.1 - 0.00031 20.3 0.3 0.0014 18.3 0.0 2.1 3 0 0 3 3 3 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain F420_oxidored PF03807.17 BAD86155.1 - 0.00067 20.2 0.8 0.15 12.7 0.0 2.7 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent XdhC_C PF13478.6 BAD86155.1 - 0.0017 18.9 0.0 0.014 15.9 0.0 2.4 2 1 0 2 2 2 1 XdhC Rossmann domain AdoHcyase_NAD PF00670.21 BAD86155.1 - 0.0022 18.1 0.2 0.0057 16.7 0.0 1.7 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 3HCDH_N PF02737.18 BAD86155.1 - 0.0042 17.0 0.2 0.01 15.7 0.0 1.8 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NmrA PF05368.13 BAD86155.1 - 0.0051 16.4 0.1 0.017 14.7 0.1 1.9 2 0 0 2 2 2 1 NmrA-like family GFO_IDH_MocA PF01408.22 BAD86155.1 - 0.0052 17.6 0.4 1.1 10.1 0.0 2.8 2 1 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold TrkA_N PF02254.18 BAD86155.1 - 0.093 13.0 1.4 2.5 8.4 0.0 2.8 3 1 0 3 3 3 0 TrkA-N domain NAD_binding_7 PF13241.6 BAD86155.1 - 0.096 13.1 0.2 0.41 11.1 0.0 2.1 2 0 0 2 2 2 0 Putative NAD(P)-binding NAD_binding_10 PF13460.6 BAD86155.1 - 0.13 12.1 2.0 0.23 11.3 0.3 2.2 2 1 0 2 2 2 0 NAD(P)H-binding PrpR_N PF06506.11 BAD86155.1 - 0.15 11.6 1.3 0.63 9.6 0.0 2.5 4 0 0 4 4 4 0 Propionate catabolism activator Nitro_FeMo-Co PF02579.17 BAD86155.1 - 0.53 10.7 4.4 32 4.9 0.1 4.1 4 1 1 5 5 5 0 Dinitrogenase iron-molybdenum cofactor PhoU_div PF01865.16 BAD86156.1 - 6.2e-41 140.1 4.8 7.5e-41 139.8 4.8 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF47 PhoU PF01895.19 BAD86156.1 - 0.0014 19.0 7.1 0.024 15.1 1.9 2.4 2 0 0 2 2 2 2 PhoU domain Rnk_N PF14760.6 BAD86156.1 - 0.0032 17.9 0.7 0.3 11.6 0.0 2.6 2 0 0 2 2 2 1 Rnk N-terminus FlaC_arch PF05377.11 BAD86156.1 - 0.075 13.4 3.7 0.66 10.4 0.1 3.1 2 1 1 3 3 3 0 Flagella accessory protein C (FlaC) KIP1 PF07765.12 BAD86156.1 - 0.16 12.1 1.9 1.1 9.4 0.9 2.5 2 0 0 2 2 2 0 KIP1-like protein zf-HC2 PF13490.6 BAD86156.1 - 0.62 10.4 3.0 1.3 9.3 0.0 3.1 4 0 0 4 4 4 0 Putative zinc-finger YtxH PF12732.7 BAD86156.1 - 2 9.0 10.8 17 6.0 7.5 3.2 1 1 1 2 2 2 0 YtxH-like protein ApbA PF02558.16 BAD86157.1 - 1.4e-38 131.9 0.2 2.7e-38 131.0 0.0 1.5 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA ApbA_C PF08546.11 BAD86157.1 - 2.3e-31 108.6 0.0 8.3e-31 106.8 0.0 1.9 3 0 0 3 3 3 1 Ketopantoate reductase PanE/ApbA C terminal NAD_Gly3P_dh_N PF01210.23 BAD86157.1 - 8.3e-05 22.6 0.0 0.00019 21.4 0.0 1.7 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Pyr_redox PF00070.27 BAD86157.1 - 0.00053 20.5 0.2 0.0063 17.0 0.1 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Sacchrp_dh_NADP PF03435.18 BAD86157.1 - 0.00094 19.4 0.0 0.0046 17.2 0.0 2.1 3 0 0 3 3 3 1 Saccharopine dehydrogenase NADP binding domain UDPG_MGDP_dh_N PF03721.14 BAD86157.1 - 0.0015 18.1 0.0 0.0025 17.4 0.0 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain F420_oxidored PF03807.17 BAD86157.1 - 0.0076 16.8 0.0 0.021 15.4 0.0 1.8 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.18 BAD86157.1 - 0.0076 16.2 0.0 0.017 15.0 0.0 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox_2 PF07992.14 BAD86157.1 - 0.025 13.8 0.1 0.04 13.1 0.1 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 BAD86157.1 - 0.026 14.8 0.5 0.054 13.7 0.5 1.5 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 BAD86157.1 - 0.071 12.3 0.2 0.14 11.3 0.2 1.5 1 0 0 1 1 1 0 FAD binding domain DUF2892 PF11127.8 BAD86158.1 - 7.8 6.6 7.2 11 6.2 2.1 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF2892) SpoU_methylase PF00588.19 BAD86159.1 - 4e-34 117.8 0.0 6.1e-34 117.2 0.0 1.3 1 0 0 1 1 1 1 SpoU rRNA Methylase family DUF1938 PF09153.10 BAD86160.1 - 1.5e-41 140.4 0.1 2.7e-41 139.6 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1938) DNA_binding_1 PF01035.20 BAD86160.1 - 3.2e-26 91.3 0.0 5.4e-26 90.5 0.0 1.4 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain TPR_6 PF13174.6 BAD86161.1 - 3.2e-09 36.8 30.9 0.04 14.6 0.8 6.9 5 2 2 7 7 7 4 Tetratricopeptide repeat TPR_15 PF13429.6 BAD86161.1 - 4.6e-09 35.9 17.6 2.7e-08 33.4 11.6 3.7 1 1 2 3 3 3 2 Tetratricopeptide repeat TPR_2 PF07719.17 BAD86161.1 - 5.1e-08 32.4 47.7 0.00087 19.2 2.2 7.6 4 3 5 9 9 9 5 Tetratricopeptide repeat TPR_7 PF13176.6 BAD86161.1 - 7.1e-06 25.7 27.2 0.0059 16.5 0.8 6.6 5 2 0 5 5 5 3 Tetratricopeptide repeat SNAP PF14938.6 BAD86161.1 - 1.9e-05 24.2 22.3 1.9e-05 24.2 22.3 2.5 1 1 1 2 2 2 1 Soluble NSF attachment protein, SNAP TPR_8 PF13181.6 BAD86161.1 - 1.9e-05 24.5 39.2 0.018 15.2 0.7 7.1 5 1 2 7 7 7 5 Tetratricopeptide repeat TPR_19 PF14559.6 BAD86161.1 - 0.00038 20.9 20.2 0.083 13.4 1.6 3.9 3 1 0 3 3 3 3 Tetratricopeptide repeat TPR_14 PF13428.6 BAD86161.1 - 0.00042 20.9 25.4 0.58 11.1 0.3 6.0 1 1 5 6 6 6 3 Tetratricopeptide repeat TPR_16 PF13432.6 BAD86161.1 - 0.001 19.7 27.3 0.27 11.9 3.6 5.5 1 1 5 6 6 6 3 Tetratricopeptide repeat TPR_12 PF13424.6 BAD86161.1 - 0.0034 17.6 28.9 0.039 14.2 1.5 5.0 1 1 3 4 4 4 4 Tetratricopeptide repeat TPR_1 PF00515.28 BAD86161.1 - 0.004 16.9 33.7 0.066 13.1 1.0 6.8 5 2 2 7 7 7 3 Tetratricopeptide repeat MIT PF04212.18 BAD86161.1 - 0.007 16.4 1.3 0.007 16.4 1.3 5.3 5 0 0 5 5 5 1 MIT (microtubule interacting and transport) domain PDR_CDR PF06422.12 BAD86161.1 - 0.048 13.6 0.6 0.16 11.9 0.6 1.8 1 0 0 1 1 1 0 CDR ABC transporter TPR_9 PF13371.6 BAD86161.1 - 0.22 11.7 9.1 6.2 7.0 0.1 4.4 3 2 2 5 5 5 0 Tetratricopeptide repeat Clathrin PF00637.20 BAD86161.1 - 0.26 11.2 9.1 0.22 11.4 0.5 3.5 1 1 1 3 3 3 0 Region in Clathrin and VPS TPR_4 PF07721.14 BAD86161.1 - 1.9 9.4 6.6 14 6.6 0.1 4.3 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_17 PF13431.6 BAD86161.1 - 4 8.0 8.1 38 5.0 0.1 5.0 4 1 1 5 5 5 0 Tetratricopeptide repeat Acyl-CoA_ox_N PF14749.6 BAD86161.1 - 7.4 7.1 8.0 29 5.2 1.1 3.1 3 0 0 3 3 3 0 Acyl-coenzyme A oxidase N-terminal NAC PF01849.18 BAD86162.1 - 1.6e-12 47.2 5.2 3.5e-12 46.1 3.4 2.0 1 1 1 2 2 2 1 NAC domain CUE PF02845.16 BAD86162.1 - 0.02 14.6 0.1 0.13 12.0 0.0 2.1 1 1 0 2 2 2 0 CUE domain UBA_4 PF14555.6 BAD86162.1 - 0.031 14.1 0.0 0.075 12.9 0.0 1.6 1 1 1 2 2 2 0 UBA-like domain Cas_Csa5 PF09702.10 BAD86162.1 - 0.034 14.4 0.6 0.042 14.1 0.6 1.2 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Csa5) C4bp_oligo PF18453.1 BAD86162.1 - 0.039 14.1 0.0 0.039 14.1 0.0 2.3 4 0 0 4 4 4 0 Oligomerization domain of C4b-binding protein alpha Clp_N PF02861.20 BAD86162.1 - 0.041 14.0 0.3 0.13 12.4 0.1 2.0 2 0 0 2 2 2 0 Clp amino terminal domain, pathogenicity island component Acyl_transf_1 PF00698.21 BAD86162.1 - 0.065 12.7 0.1 0.07 12.6 0.1 1.0 1 0 0 1 1 1 0 Acyl transferase domain SPT6_acidic PF14632.6 BAD86162.1 - 0.068 13.8 0.1 0.11 13.1 0.1 1.4 1 0 0 1 1 1 0 Acidic N-terminal SPT6 CMD PF02627.20 BAD86163.1 - 3.6e-19 68.6 0.4 4.6e-19 68.3 0.4 1.2 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family HEAT_2 PF13646.6 BAD86164.1 - 1.6e-19 70.1 2.1 5.9e-05 23.4 0.1 5.4 2 2 3 5 5 5 3 HEAT repeats HEAT PF02985.22 BAD86164.1 - 5.4e-15 54.2 2.2 0.5 10.8 0.0 7.1 8 0 0 8 8 6 3 HEAT repeat Adaptin_N PF01602.20 BAD86164.1 - 1.7e-13 50.0 1.2 8.1e-05 21.4 0.1 3.3 2 1 1 3 3 3 3 Adaptin N terminal region Cnd1 PF12717.7 BAD86164.1 - 6.3e-10 39.3 3.9 0.046 13.8 0.2 4.4 2 1 2 4 4 4 4 non-SMC mitotic condensation complex subunit 1 RTP1_C1 PF10363.9 BAD86164.1 - 3.6e-08 33.6 2.5 0.016 15.4 0.1 3.6 3 0 0 3 3 3 2 Required for nuclear transport of RNA pol II C-terminus 1 Proteasom_PSMB PF10508.9 BAD86164.1 - 3.2e-07 29.2 3.9 0.00032 19.4 0.6 2.2 2 0 0 2 2 2 2 Proteasome non-ATPase 26S subunit V-ATPase_H_N PF03224.14 BAD86164.1 - 3.5e-06 26.6 1.5 0.0045 16.3 0.0 3.9 1 1 2 3 3 3 1 V-ATPase subunit H CLASP_N PF12348.8 BAD86164.1 - 5e-06 26.3 0.1 0.57 9.7 0.0 4.0 4 1 0 4 4 4 1 CLASP N terminal HEAT_EZ PF13513.6 BAD86164.1 - 1.9e-05 25.1 1.6 2.9 8.5 0.0 6.2 5 3 3 8 8 7 1 HEAT-like repeat DCB PF16213.5 BAD86164.1 - 4.4e-05 23.2 0.5 0.13 11.9 0.0 3.9 2 1 2 4 4 4 1 Dimerisation and cyclophilin-binding domain of Mon2 V-ATPase_H_C PF11698.8 BAD86164.1 - 5e-05 23.4 4.6 0.66 10.1 0.0 4.0 4 0 0 4 4 4 2 V-ATPase subunit H DRIM PF07539.12 BAD86164.1 - 7.8e-05 21.2 3.4 0.00042 18.8 0.3 2.4 1 1 0 2 2 2 1 Down-regulated in metastasis Arm PF00514.23 BAD86164.1 - 0.0005 20.0 0.1 16 5.7 0.0 5.8 6 0 0 6 6 6 0 Armadillo/beta-catenin-like repeat Vac14_Fab1_bd PF12755.7 BAD86164.1 - 0.00058 20.4 1.2 7.7 7.2 0.0 4.5 4 1 1 5 5 4 0 Vacuolar 14 Fab1-binding region Nipped-B_C PF12830.7 BAD86164.1 - 0.0016 18.4 0.0 0.092 12.7 0.0 3.0 3 1 0 3 3 3 1 Sister chromatid cohesion C-terminus GGA_N-GAT PF18308.1 BAD86164.1 - 0.0034 17.0 0.2 0.18 11.4 0.0 3.8 4 0 0 4 4 3 1 GGA N-GAT domain MOR2-PAG1_C PF14225.6 BAD86164.1 - 0.0036 17.2 0.1 0.052 13.4 0.0 2.6 2 1 0 2 2 2 1 Cell morphogenesis C-terminal RIX1 PF08167.12 BAD86164.1 - 0.0049 16.6 0.1 3 7.5 0.0 4.0 2 2 2 4 4 4 1 rRNA processing/ribosome biogenesis TAFH PF07531.14 BAD86164.1 - 0.008 16.3 0.1 12 6.1 0.0 3.7 2 1 1 3 3 3 0 NHR1 homology to TAF Aldo_ket_red PF00248.21 BAD86164.1 - 0.0083 15.4 0.1 0.15 11.2 0.0 2.3 2 0 0 2 2 2 1 Aldo/keto reductase family TFCD_C PF12612.8 BAD86164.1 - 0.016 15.1 0.4 0.84 9.4 0.0 3.3 3 0 0 3 3 3 0 Tubulin folding cofactor D C terminal SHOCT PF09851.9 BAD86164.1 - 0.018 14.7 0.9 0.14 11.9 0.1 3.0 2 0 0 2 2 2 0 Short C-terminal domain RasGEF_N_2 PF14663.6 BAD86164.1 - 0.03 14.7 1.9 1.8 9.0 0.0 4.2 3 2 2 5 5 4 0 Rapamycin-insensitive companion of mTOR RasGEF_N domain Cnd3 PF12719.7 BAD86164.1 - 0.033 13.4 0.1 3.9 6.6 0.0 2.8 2 1 0 2 2 2 0 Nuclear condensing complex subunits, C-term domain Tti2 PF10521.9 BAD86164.1 - 0.055 13.0 0.3 1.3 8.5 0.0 3.2 3 2 1 4 4 4 0 Tti2 family HrpB1_HrpK PF09613.10 BAD86164.1 - 0.057 13.0 0.1 0.35 10.5 0.1 2.4 2 0 0 2 2 1 0 Bacterial type III secretion protein (HrpB1_HrpK) ACC_central PF08326.12 BAD86164.1 - 0.071 11.3 3.6 2.1 6.4 0.2 3.5 2 1 1 3 3 3 0 Acetyl-CoA carboxylase, central region Xpo1 PF08389.12 BAD86164.1 - 0.1 12.7 0.0 2.9 7.9 0.0 3.1 3 1 0 3 3 3 0 Exportin 1-like protein B56 PF01603.20 BAD86164.1 - 0.11 11.4 0.0 18 4.1 0.0 3.0 4 0 0 4 4 4 0 Protein phosphatase 2A regulatory B subunit (B56 family) DUF2555 PF10742.9 BAD86164.1 - 0.18 11.6 0.6 73 3.3 0.0 3.6 3 0 0 3 3 3 0 Protein of unknown function (DUF2555) HrcA PF01628.21 BAD86164.1 - 0.21 11.4 3.6 1.6 8.6 1.5 3.1 3 2 0 3 3 3 0 HrcA protein C terminal domain U3snoRNP10 PF12397.8 BAD86164.1 - 0.28 11.5 1.5 12 6.2 0.1 3.3 3 2 0 3 3 2 0 U3 small nucleolar RNA-associated protein 10 GTP-bdg_N PF13167.6 BAD86165.1 - 4.3e-24 85.0 0.1 2.5e-23 82.6 0.0 2.4 2 0 0 2 2 2 1 GTP-binding GTPase N-terminal MMR_HSR1 PF01926.23 BAD86165.1 - 1.9e-20 73.0 0.1 5.7e-20 71.5 0.0 1.8 2 0 0 2 2 2 1 50S ribosome-binding GTPase GTP-bdg_M PF16360.5 BAD86165.1 - 2.5e-18 66.5 6.0 2.5e-18 66.5 6.0 2.0 2 0 0 2 2 1 1 GTP-binding GTPase Middle Region FeoB_N PF02421.18 BAD86165.1 - 1.7e-10 40.6 0.0 3.7e-10 39.5 0.0 1.6 1 0 0 1 1 1 1 Ferrous iron transport protein B RsgA_GTPase PF03193.16 BAD86165.1 - 2.8e-06 27.3 0.4 0.021 14.7 0.0 2.8 3 0 0 3 3 3 2 RsgA GTPase GTP_EFTU PF00009.27 BAD86165.1 - 3.3e-06 26.8 0.0 0.00067 19.2 0.0 2.3 1 1 1 2 2 2 1 Elongation factor Tu GTP binding domain Dynamin_N PF00350.23 BAD86165.1 - 8.9e-05 22.6 0.0 0.0052 16.9 0.0 2.7 2 1 1 3 3 2 1 Dynamin family Arf PF00025.21 BAD86165.1 - 0.00041 19.9 1.2 0.004 16.6 1.2 2.4 1 1 0 1 1 1 1 ADP-ribosylation factor family ATP_bind_1 PF03029.17 BAD86165.1 - 0.0027 17.5 0.1 0.071 12.9 0.0 2.3 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein AAA_16 PF13191.6 BAD86165.1 - 0.0044 17.4 0.2 0.011 16.1 0.2 1.7 1 0 0 1 1 1 1 AAA ATPase domain Roc PF08477.13 BAD86165.1 - 0.0045 17.2 0.0 0.056 13.7 0.0 2.3 1 1 0 1 1 1 1 Ras of Complex, Roc, domain of DAPkinase cobW PF02492.19 BAD86165.1 - 0.0049 16.5 0.3 3.5 7.2 0.1 2.5 1 1 1 2 2 2 2 CobW/HypB/UreG, nucleotide-binding domain Kinase-PolyVal PF18762.1 BAD86165.1 - 0.0058 16.6 0.0 0.012 15.6 0.0 1.5 1 0 0 1 1 1 1 Serine/Threonine/Tyrosine Kinase found in polyvalent proteins PduV-EutP PF10662.9 BAD86165.1 - 0.0063 16.3 0.1 2.2 8.0 0.0 2.5 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation ABC_tran PF00005.27 BAD86165.1 - 0.039 14.5 0.0 0.12 12.9 0.0 1.8 1 0 0 1 1 1 0 ABC transporter Zeta_toxin PF06414.12 BAD86165.1 - 0.051 12.8 0.0 0.21 10.8 0.0 1.9 2 0 0 2 2 2 0 Zeta toxin NOG1 PF06858.14 BAD86165.1 - 0.057 13.2 0.0 0.19 11.6 0.0 1.9 1 0 0 1 1 1 0 Nucleolar GTP-binding protein 1 (NOG1) GBP PF02263.19 BAD86165.1 - 0.076 12.3 0.0 1.5 8.0 0.0 2.2 2 0 0 2 2 2 0 Guanylate-binding protein, N-terminal domain AAA_14 PF13173.6 BAD86165.1 - 0.078 13.0 0.1 0.38 10.8 0.0 2.2 3 0 0 3 3 2 0 AAA domain HSDR_N PF04313.14 BAD86165.1 - 0.11 12.4 0.4 2.5 8.0 0.4 2.4 1 1 0 1 1 1 0 Type I restriction enzyme R protein N terminus (HSDR_N) AAA_22 PF13401.6 BAD86165.1 - 0.13 12.5 0.0 1.2 9.5 0.0 2.6 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.6 BAD86165.1 - 0.16 12.5 0.0 0.16 12.5 0.0 2.3 3 0 0 3 3 1 0 AAA domain AAA_29 PF13555.6 BAD86165.1 - 0.17 11.7 0.0 0.42 10.4 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF1192 PF06698.11 BAD86165.1 - 8.7 6.5 8.6 9.2 6.4 0.9 3.5 3 0 0 3 3 3 0 Protein of unknown function (DUF1192) PHO4 PF01384.20 BAD86166.1 - 1e-69 235.2 40.4 4.2e-69 233.2 40.4 1.8 1 1 0 1 1 1 1 Phosphate transporter family POR PF01558.18 BAD86167.1 - 2.5e-44 151.4 0.7 2.9e-44 151.2 0.7 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase MAF_flag10 PF01973.18 BAD86167.1 - 0.026 14.2 0.0 0.037 13.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function DUF115 Fer4 PF00037.27 BAD86168.1 - 9.7e-15 53.7 18.2 2.7e-08 33.3 5.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 BAD86168.1 - 8.5e-11 41.8 9.1 1.1e-10 41.4 9.1 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 BAD86168.1 - 2.8e-10 39.8 16.6 5.9e-06 26.1 3.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 BAD86168.1 - 5e-10 39.8 22.8 2.4e-07 31.2 11.3 1.7 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 BAD86168.1 - 4.4e-08 32.7 12.2 0.00018 21.4 2.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 BAD86168.1 - 1.1e-07 31.9 20.1 2.7e-06 27.4 11.0 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 BAD86168.1 - 1.5e-07 31.4 23.9 2.7e-05 24.2 13.4 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 BAD86168.1 - 3.1e-07 31.2 11.5 0.00025 21.9 4.0 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_15 PF13459.6 BAD86168.1 - 5.3e-05 23.9 7.8 0.0065 17.2 2.0 2.7 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.6 BAD86168.1 - 7e-05 23.3 10.3 0.0051 17.3 1.3 2.5 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_17 PF13534.6 BAD86168.1 - 0.0012 19.4 7.5 0.14 12.8 2.6 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 BAD86168.1 - 0.019 15.4 13.4 0.32 11.6 4.0 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_22 PF17179.4 BAD86168.1 - 0.21 12.5 10.0 0.8 10.6 2.3 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 BAD86168.1 - 0.23 11.9 14.2 0.25 11.8 3.7 2.2 1 1 2 3 3 2 0 4Fe-4S dicluster domain POR_N PF01855.19 BAD86169.1 - 9.1e-78 261.2 2.7 1.2e-77 260.7 2.7 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 BAD86169.1 - 2e-34 118.0 0.0 4.8e-34 116.7 0.0 1.7 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 BAD86169.1 - 2.5e-05 24.2 0.0 6.7e-05 22.8 0.0 1.7 1 0 0 1 1 1 1 Transketolase, C-terminal domain Phosphonate-bd PF12974.7 BAD86169.1 - 0.0014 18.3 0.7 0.012 15.3 0.0 2.2 2 0 0 2 2 2 1 ABC transporter, phosphonate, periplasmic substrate-binding protein TPP_enzyme_N PF02776.18 BAD86169.1 - 1.1 8.9 7.7 4.4 6.9 7.7 2.0 1 1 0 1 1 1 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 BAD86170.1 - 3.3e-19 69.2 0.0 5.2e-19 68.5 0.0 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Fer4 PF00037.27 BAD86171.1 - 6.3e-15 54.3 16.1 1.9e-08 33.7 6.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 BAD86171.1 - 3.8e-13 48.9 14.5 7.7e-07 28.9 2.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 BAD86171.1 - 7e-11 42.1 5.5 1e-10 41.6 5.5 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 BAD86171.1 - 1.1e-09 37.8 11.7 0.00015 21.7 1.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 BAD86171.1 - 5.4e-08 33.3 9.4 1.4e-07 32.0 9.6 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 BAD86171.1 - 3e-07 30.4 21.6 3.2e-05 23.9 12.1 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 BAD86171.1 - 7.4e-07 30.0 7.8 0.0016 19.3 2.3 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 BAD86171.1 - 9.4e-07 28.9 17.7 3.1e-05 24.0 10.2 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 BAD86171.1 - 3e-06 27.6 2.7 0.025 15.0 0.9 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 BAD86171.1 - 1.6e-05 25.1 12.2 0.0018 18.6 1.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.6 BAD86171.1 - 0.0015 19.3 12.0 0.28 12.0 0.5 3.0 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_22 PF17179.4 BAD86171.1 - 0.0028 18.4 3.7 0.13 13.1 0.4 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 BAD86171.1 - 0.0078 16.7 12.1 0.49 11.0 2.3 2.2 1 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 BAD86171.1 - 0.14 12.7 13.3 0.38 11.3 2.0 2.5 1 1 1 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 BAD86171.1 - 0.74 10.9 16.6 2.9 9.1 5.4 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain POR_N PF01855.19 BAD86172.1 - 1.7e-81 273.4 0.1 2.3e-81 272.9 0.1 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 BAD86172.1 - 4.1e-29 100.9 0.0 7.8e-29 100.0 0.0 1.5 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 BAD86172.1 - 3e-05 23.9 0.1 8.4e-05 22.5 0.0 1.8 2 0 0 2 2 2 1 Transketolase, C-terminal domain DUF4290 PF14123.6 BAD86172.1 - 0.076 12.6 0.0 0.45 10.1 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4290) TPP_enzyme_C PF02775.21 BAD86173.1 - 3.5e-26 91.8 1.8 3.7e-26 91.7 0.4 1.8 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.6 BAD86173.1 - 0.04 13.1 0.2 0.07 12.3 0.2 1.3 1 0 0 1 1 1 0 1-deoxy-D-xylulose-5-phosphate synthase Rep_1B PF17873.1 BAD86173.1 - 0.13 12.2 0.0 0.36 10.8 0.0 1.7 1 0 0 1 1 1 0 Replicase polyprotein 1ab PBECR3 PF18812.1 BAD86174.1 - 1.2e-06 28.4 0.3 3.1e-06 27.1 0.1 1.7 2 0 0 2 2 2 1 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3 PBECR2 PF18810.1 BAD86174.1 - 0.0032 17.8 0.0 0.0061 16.8 0.0 1.5 1 0 0 1 1 1 1 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2 TraQ PF09679.10 BAD86174.1 - 0.04 13.8 0.5 0.52 10.3 0.1 2.3 2 0 0 2 2 2 0 Type-F conjugative transfer system pilin chaperone (TraQ) FtsQ PF03799.15 BAD86175.1 - 0.0014 19.5 0.0 0.0063 17.3 0.0 2.0 2 1 0 2 2 2 1 Cell division protein FtsQ AHJR-like PF18743.1 BAD86176.1 - 0.16 11.5 0.0 0.26 10.8 0.0 1.3 1 0 0 1 1 1 0 REase_AHJR-like Aminotran_5 PF00266.19 BAD86179.1 - 3e-138 460.8 0.0 3.3e-138 460.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 BAD86179.1 - 1.4e-06 27.7 0.0 6.2e-05 22.3 0.0 2.0 2 0 0 2 2 2 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 BAD86179.1 - 5.3e-06 25.9 0.0 6.9e-06 25.5 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 BAD86179.1 - 0.00084 18.7 0.0 0.0014 18.0 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 BAD86179.1 - 0.0009 17.9 0.0 0.0014 17.2 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DUF1110 PF06533.12 BAD86179.1 - 0.078 12.9 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1110) EutN_CcmL PF03319.13 BAD86179.1 - 0.15 12.7 0.1 9.1 6.9 0.0 2.3 2 0 0 2 2 2 0 Ethanolamine utilisation protein EutN/carboxysome TBP PF00352.21 BAD86180.1 - 0.003 17.5 0.0 0.0037 17.2 0.0 1.1 1 0 0 1 1 1 1 Transcription factor TFIID (or TATA-binding protein, TBP) MFS_1 PF07690.16 BAD86181.1 - 5.7e-36 124.2 70.4 1.7e-29 102.9 38.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 BAD86181.1 - 2.8e-10 39.7 9.8 2.8e-10 39.7 9.8 1.9 2 1 0 2 2 2 1 Sugar (and other) transporter MFS_1_like PF12832.7 BAD86181.1 - 6.6e-06 25.2 29.0 0.0021 17.0 0.6 4.0 2 2 2 4 4 4 2 MFS_1 like family MFS_2 PF13347.6 BAD86181.1 - 0.00013 20.7 11.6 0.00013 20.7 11.6 3.2 1 1 3 4 4 4 2 MFS/sugar transport protein UNC-93 PF05978.16 BAD86181.1 - 0.0033 17.2 3.2 0.0033 17.2 3.2 2.4 3 1 0 3 3 3 1 Ion channel regulatory protein UNC-93 OATP PF03137.20 BAD86181.1 - 0.007 14.7 0.8 0.007 14.7 0.8 2.7 2 1 1 3 3 3 1 Organic Anion Transporter Polypeptide (OATP) family AIRS_C PF02769.22 BAD86182.1 - 1.3e-31 109.9 1.4 1.9e-31 109.3 1.4 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 BAD86182.1 - 3e-17 63.0 0.4 7e-17 61.9 0.4 1.6 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain NTP_transf_2 PF01909.23 BAD86183.1 - 6.6e-13 48.8 0.0 7e-13 48.7 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 BAD86183.1 - 4.5e-09 36.3 0.0 5.1e-09 36.1 0.0 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DNA_pol_B_palm PF14792.6 BAD86183.1 - 1.3e-05 25.3 0.0 1.4e-05 25.3 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase beta palm DUF294 PF03445.13 BAD86183.1 - 0.19 11.6 0.0 0.22 11.3 0.0 1.2 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 PIN PF01850.21 BAD86184.1 - 1.5e-08 35.1 1.1 7.2e-07 29.7 1.1 2.1 1 1 0 1 1 1 1 PIN domain DUF5615 PF18480.1 BAD86184.1 - 0.0015 18.2 0.0 0.0032 17.2 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF5615) PucR PF07905.11 BAD86184.1 - 0.014 15.7 0.1 0.019 15.2 0.1 1.3 1 1 0 1 1 1 0 Purine catabolism regulatory protein-like family Sua5_yciO_yrdC PF01300.18 BAD86186.1 - 1.4e-46 158.2 0.0 2.1e-46 157.7 0.0 1.3 1 0 0 1 1 1 1 Telomere recombination zf-HYPF PF07503.12 BAD86186.1 - 2.2e-32 110.5 16.6 1.4e-16 60.0 3.0 2.4 2 0 0 2 2 2 2 HypF finger HypF_C PF17788.1 BAD86186.1 - 2.3e-29 102.1 0.3 4.2e-29 101.2 0.3 1.4 1 0 0 1 1 1 1 HypF Kae1-like domain Acylphosphatase PF00708.18 BAD86186.1 - 7.8e-26 90.3 0.1 2.7e-25 88.6 0.0 2.0 2 0 0 2 2 2 1 Acylphosphatase Peptidase_M22 PF00814.25 BAD86186.1 - 7.9e-09 35.6 0.7 1.6e-06 28.0 0.1 2.3 2 0 0 2 2 2 2 Glycoprotease family Carbam_trans_N PF02543.15 BAD86186.1 - 0.0003 20.6 1.0 0.0032 17.2 1.0 2.1 1 1 0 1 1 1 1 Carbamoyltransferase N-terminus BcrAD_BadFG PF01869.20 BAD86186.1 - 0.013 15.0 0.1 0.041 13.4 0.1 1.8 1 1 0 1 1 1 0 BadF/BadG/BcrA/BcrD ATPase family Zn-ribbon_8 PF09723.10 BAD86186.1 - 0.054 13.6 6.7 0.28 11.3 1.3 2.9 3 0 0 3 3 3 0 Zinc ribbon domain DZR PF12773.7 BAD86186.1 - 0.059 13.4 2.4 7 6.8 0.1 2.3 2 0 0 2 2 2 0 Double zinc ribbon NMD3 PF04981.13 BAD86186.1 - 0.098 12.1 3.8 0.58 9.6 0.2 2.6 2 1 1 3 3 3 0 NMD3 family Catalase_C PF18011.1 BAD86186.1 - 0.16 11.6 0.0 0.44 10.2 0.0 1.6 1 0 0 1 1 1 0 C-terminal domain found in long catalases Lar_restr_allev PF14354.6 BAD86186.1 - 0.28 11.6 1.3 11 6.4 0.2 2.6 2 0 0 2 2 2 0 Restriction alleviation protein Lar zinc_ribbon_15 PF17032.5 BAD86186.1 - 1.6 9.5 3.8 2.6 8.8 2.7 1.9 1 1 0 1 1 1 0 zinc-ribbon family DUF4264 PF14084.6 BAD86187.1 - 0.06 13.0 0.0 0.13 11.9 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF4264) DUF4115 PF13464.6 BAD86187.1 - 0.16 12.2 0.1 4 7.7 0.0 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF4115) Ferritin PF00210.24 BAD86188.1 - 6.1e-45 152.6 4.4 7e-45 152.4 4.4 1.0 1 0 0 1 1 1 1 Ferritin-like domain Rubrerythrin PF02915.17 BAD86188.1 - 0.00019 21.9 4.6 0.00091 19.6 4.7 1.9 1 1 0 1 1 1 1 Rubrerythrin Lipoprotein_10 PF03202.13 BAD86188.1 - 0.081 13.4 0.1 0.16 12.4 0.1 1.5 1 0 0 1 1 1 0 Putative mycoplasma lipoprotein, C-terminal region HypD PF01924.16 BAD86189.1 - 1.4e-138 461.8 0.0 1.6e-138 461.6 0.0 1.0 1 0 0 1 1 1 1 Hydrogenase formation hypA family Ubiq_cyt_C_chap PF03981.12 BAD86189.1 - 0.023 14.8 0.0 0.042 13.9 0.0 1.4 1 0 0 1 1 1 0 Ubiquinol-cytochrome C chaperone HupF_HypC PF01455.18 BAD86190.1 - 1.7e-29 101.7 0.1 2e-29 101.5 0.1 1.1 1 0 0 1 1 1 1 HupF/HypC family RuvA_N PF01330.21 BAD86190.1 - 0.098 12.8 0.0 0.12 12.5 0.0 1.2 1 0 0 1 1 1 0 RuvA N terminal domain NTP_transf_3 PF12804.7 BAD86191.1 - 7.5e-30 104.4 0.0 8.9e-30 104.2 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.19 BAD86191.1 - 2.6e-05 24.3 0.0 0.0042 17.0 0.0 2.1 2 0 0 2 2 2 2 Cytidylyltransferase IspD PF01128.19 BAD86191.1 - 2.8e-05 24.0 0.0 3.7e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NTP_transferase PF00483.23 BAD86191.1 - 0.0086 15.7 0.0 0.015 14.9 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyl transferase SPK PF04435.18 BAD86191.1 - 0.04 14.3 0.2 0.076 13.4 0.0 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF545) Josephin PF02099.17 BAD86192.1 - 0.026 14.6 0.1 0.028 14.5 0.1 1.1 1 0 0 1 1 1 0 Josephin EcoEI_R_C PF08463.10 BAD86192.1 - 0.043 13.9 0.4 0.047 13.8 0.4 1.0 1 0 0 1 1 1 0 EcoEI R protein C-terminal HycI PF01750.18 BAD86193.1 - 8.6e-14 51.5 0.0 1.2e-13 51.0 0.0 1.2 1 0 0 1 1 1 1 Hydrogenase maturation protease B12-binding PF02310.19 BAD86193.1 - 0.03 14.4 0.0 7 6.7 0.0 2.2 2 0 0 2 2 2 0 B12 binding domain PIN_3 PF13470.6 BAD86194.1 - 5.8e-18 65.7 0.0 7.5e-18 65.4 0.0 1.1 1 0 0 1 1 1 1 PIN domain PIN PF01850.21 BAD86194.1 - 0.00068 20.1 0.5 0.0038 17.7 0.5 1.9 1 1 0 1 1 1 1 PIN domain PIN_10 PF18478.1 BAD86194.1 - 0.055 13.7 0.0 0.088 13.0 0.0 1.4 1 0 0 1 1 1 0 PIN like domain MPM1 PF17234.2 BAD86195.1 - 0.0043 17.3 0.0 0.0051 17.1 0.0 1.3 1 1 0 1 1 1 1 Mitochondrial peculiar membrane protein 1 MerR-DNA-bind PF09278.11 BAD86195.1 - 0.054 14.0 0.3 0.093 13.3 0.1 1.6 2 0 0 2 2 2 0 MerR, DNA binding ParA PF10609.9 BAD86196.1 - 1.6e-56 191.6 0.0 2e-56 191.2 0.0 1.1 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 BAD86196.1 - 5.3e-16 58.8 0.0 7e-16 58.5 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 BAD86196.1 - 1.7e-11 44.4 0.1 6.8e-07 29.4 0.0 2.2 1 1 0 2 2 2 2 AAA domain ArsA_ATPase PF02374.15 BAD86196.1 - 2.3e-07 30.3 2.6 1.7e-05 24.2 0.1 2.7 2 1 1 3 3 3 2 Anion-transporting ATPase MipZ PF09140.11 BAD86196.1 - 4.7e-06 26.1 0.0 9.6e-06 25.1 0.0 1.5 1 1 0 1 1 1 1 ATPase MipZ AAA_26 PF13500.6 BAD86196.1 - 7.2e-06 26.0 0.6 0.012 15.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain Fer4_NifH PF00142.18 BAD86196.1 - 0.00015 21.3 0.0 0.016 14.7 0.0 2.2 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family HAS-barrel PF09378.10 BAD86196.1 - 0.007 16.5 0.1 0.015 15.4 0.1 1.5 1 0 0 1 1 1 1 HAS barrel domain MeaB PF03308.16 BAD86196.1 - 0.028 13.4 0.8 0.073 12.0 0.2 1.8 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB MobB PF03205.14 BAD86196.1 - 0.099 12.5 0.5 2.5 8.0 0.0 2.1 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_30 PF13604.6 BAD86196.1 - 0.12 12.0 0.1 0.75 9.5 0.1 2.0 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 BAD86196.1 - 0.15 11.9 0.5 10 6.0 0.2 2.2 2 0 0 2 2 2 0 NTPase CLP1_P PF16575.5 BAD86196.1 - 0.21 11.3 0.1 0.48 10.2 0.0 1.6 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop HypA PF01155.19 BAD86197.1 - 5.2e-29 100.5 0.3 5.9e-29 100.3 0.3 1.0 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA PhnA_Zn_Ribbon PF08274.12 BAD86197.1 - 0.0072 16.3 1.3 1.4 8.9 0.1 2.4 2 0 0 2 2 2 1 PhnA Zinc-Ribbon RNA_POL_M_15KD PF02150.16 BAD86197.1 - 0.0086 15.9 1.8 0.63 10.0 0.5 2.2 2 0 0 2 2 2 1 RNA polymerases M/15 Kd subunit Zn_Tnp_IS1595 PF12760.7 BAD86197.1 - 0.011 15.7 0.4 1.4 9.0 0.1 2.2 2 0 0 2 2 2 0 Transposase zinc-ribbon domain Lar_restr_allev PF14354.6 BAD86197.1 - 0.013 15.9 0.2 6.1 7.3 0.1 2.2 2 0 0 2 2 2 0 Restriction alleviation protein Lar TFIIS_C PF01096.18 BAD86197.1 - 0.025 14.4 3.9 1.1 9.2 1.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DUF2318 PF10080.9 BAD86197.1 - 0.036 14.2 0.2 0.67 10.1 0.1 2.2 2 0 0 2 2 2 0 Predicted membrane protein (DUF2318) zf-ZPR1 PF03367.13 BAD86197.1 - 0.057 13.3 2.1 0.31 10.9 1.2 2.2 2 1 1 3 3 3 0 ZPR1 zinc-finger domain eIF-5_eIF-2B PF01873.17 BAD86197.1 - 0.059 13.2 0.6 0.7 9.8 0.0 2.4 2 1 1 3 3 3 0 Domain found in IF2B/IF5 MCM_OB PF17207.3 BAD86197.1 - 0.073 12.9 0.0 0.1 12.4 0.0 1.3 1 0 0 1 1 1 0 MCM OB domain Mut7-C PF01927.16 BAD86197.1 - 0.078 13.1 0.4 0.094 12.8 0.4 1.3 1 1 0 1 1 1 0 Mut7-C RNAse domain Trm112p PF03966.16 BAD86197.1 - 0.088 13.4 0.0 10 6.8 0.0 2.2 2 0 0 2 2 2 0 Trm112p-like protein TF_Zn_Ribbon PF08271.12 BAD86197.1 - 0.1 12.1 1.3 0.95 9.0 0.0 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.6 BAD86197.1 - 0.12 12.1 2.7 4.1 7.2 0.3 2.5 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.9 BAD86197.1 - 0.14 12.3 2.3 11 6.1 0.1 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DpnI PF06044.12 BAD86197.1 - 0.43 10.2 2.7 0.72 9.5 0.5 2.0 1 1 0 2 2 2 0 Dam-replacing family Zn-ribbon_8 PF09723.10 BAD86197.1 - 1.2 9.3 5.8 28 4.9 5.8 2.3 1 1 0 1 1 1 0 Zinc ribbon domain DUF4379 PF14311.6 BAD86197.1 - 1.8 9.0 4.7 9.1 6.7 4.6 2.0 1 1 1 2 2 2 0 Probable Zinc-ribbon domain DNA_ligase_ZBD PF03119.16 BAD86197.1 - 6.9 6.8 6.9 16 5.6 2.0 2.5 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Cation_efflux PF01545.21 BAD86198.1 - 1.1e-50 172.2 11.8 1.3e-50 171.9 11.8 1.0 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 BAD86198.1 - 3.1e-12 46.5 2.0 5.8e-12 45.6 2.0 1.4 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter CD20 PF04103.15 BAD86198.1 - 0.078 13.1 0.1 0.078 13.1 0.1 2.4 2 1 0 2 2 2 0 CD20-like family FA_desaturase PF00487.24 BAD86198.1 - 0.19 11.5 2.0 0.23 11.2 0.9 1.7 2 0 0 2 2 2 0 Fatty acid desaturase Nitro_FeMo-Co PF02579.17 BAD86199.1 - 0.022 15.1 0.0 0.024 14.9 0.0 1.1 1 0 0 1 1 1 0 Dinitrogenase iron-molybdenum cofactor Nitro_FeMo-Co PF02579.17 BAD86200.1 - 2.3e-05 24.6 0.1 2.3e-05 24.6 0.1 1.0 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor Fer4_21 PF14697.6 BAD86201.1 - 6.4e-06 26.2 8.7 9.6e-06 25.6 8.7 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 BAD86201.1 - 6.5e-05 23.4 10.0 0.0025 18.4 11.2 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 BAD86201.1 - 0.00024 20.8 15.1 0.042 13.7 1.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 BAD86201.1 - 0.001 19.2 9.5 0.0017 18.5 9.5 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 BAD86201.1 - 0.0026 18.7 7.6 0.028 15.4 1.8 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 BAD86201.1 - 0.054 13.6 13.0 0.75 10.0 11.5 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_2 PF12797.7 BAD86201.1 - 0.087 13.0 14.1 0.28 11.3 2.2 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.7 BAD86201.1 - 0.091 12.9 16.3 0.2 11.8 1.3 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain DUF4451 PF14616.6 BAD86201.1 - 0.59 10.4 4.1 1.5 9.1 4.1 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4451) ETF_QO PF05187.13 BAD86201.1 - 1.8 8.7 7.0 7.2 6.8 0.1 2.2 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Mucin PF01456.17 BAD86202.1 - 0.14 12.1 15.8 0.25 11.3 15.8 1.3 1 0 0 1 1 1 0 Mucin-like glycoprotein TauE PF01925.19 BAD86203.1 - 4.6e-43 147.5 31.7 5.7e-43 147.3 31.7 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE SLAC1 PF03595.17 BAD86204.1 - 2.9e-73 247.0 48.2 3.2e-73 246.8 48.2 1.0 1 0 0 1 1 1 1 Voltage-dependent anion channel Nitro_FeMo-Co PF02579.17 BAD86205.1 - 7.9e-23 80.6 0.8 9.8e-23 80.3 0.1 1.5 2 0 0 2 2 2 1 Dinitrogenase iron-molybdenum cofactor OsmC PF02566.19 BAD86206.1 - 3.1e-20 72.5 0.0 4.8e-20 71.9 0.0 1.3 1 0 0 1 1 1 1 OsmC-like protein Peripla_BP_2 PF01497.18 BAD86207.1 - 9.4e-25 87.6 0.0 1.6e-24 86.8 0.0 1.4 1 0 0 1 1 1 1 Periplasmic binding protein GnsAB_toxin PF08178.11 BAD86207.1 - 0.16 11.9 0.0 0.37 10.7 0.0 1.6 1 0 0 1 1 1 0 GnsA/GnsB toxin of bacterial toxin-antitoxin system FecCD PF01032.18 BAD86208.1 - 2.4e-97 325.7 34.1 3e-97 325.4 34.1 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 BAD86208.1 - 7.7e-05 22.3 20.2 0.00015 21.4 20.1 1.5 1 1 0 1 1 1 1 ABC 3 transport family ABC_tran PF00005.27 BAD86209.1 - 3.8e-28 98.7 0.0 6.6e-28 97.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 BAD86209.1 - 2e-11 44.3 0.1 7.5e-06 26.0 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 BAD86209.1 - 4.2e-05 23.1 0.2 0.024 14.1 0.1 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 BAD86209.1 - 4.3e-05 24.1 0.1 7e-05 23.4 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 BAD86209.1 - 0.00019 21.1 0.0 0.00034 20.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 BAD86209.1 - 0.00034 20.4 0.3 0.12 12.1 0.1 2.1 2 0 0 2 2 2 2 AAA ATPase domain RsgA_GTPase PF03193.16 BAD86209.1 - 0.002 18.0 0.0 0.0047 16.9 0.0 1.6 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 BAD86209.1 - 0.0035 17.7 0.0 0.0057 17.1 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_27 PF13514.6 BAD86209.1 - 0.0065 16.1 0.0 0.012 15.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.6 BAD86209.1 - 0.011 16.0 0.0 0.045 14.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.15 BAD86209.1 - 0.012 15.5 0.1 0.1 12.5 0.0 2.1 2 0 0 2 2 2 0 NTPase AAA_24 PF13479.6 BAD86209.1 - 0.012 15.3 0.2 1 9.0 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 BAD86209.1 - 0.032 14.2 0.0 0.5 10.4 0.0 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 BAD86209.1 - 0.047 14.0 0.1 0.22 11.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 BAD86209.1 - 0.074 13.1 0.0 0.14 12.3 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase Rad17 PF03215.15 BAD86209.1 - 0.081 12.8 0.2 0.26 11.2 0.1 1.8 2 0 0 2 2 2 0 Rad17 P-loop domain AAA_18 PF13238.6 BAD86209.1 - 0.096 13.2 0.0 0.32 11.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 BAD86209.1 - 0.12 12.1 0.0 0.25 11.1 0.0 1.5 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 BAD86209.1 - 0.13 12.4 0.1 0.91 9.7 0.1 2.1 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 BAD86209.1 - 0.16 12.2 0.3 2.7 8.3 0.2 2.4 2 1 0 2 2 1 0 Putative exonuclease SbcCD, C subunit NACHT PF05729.12 BAD86209.1 - 0.2 11.5 0.0 0.39 10.6 0.0 1.4 1 0 0 1 1 1 0 NACHT domain ParA PF10609.9 BAD86210.1 - 7.9e-96 320.3 0.5 9.5e-96 320.0 0.5 1.0 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 BAD86210.1 - 2.3e-14 53.5 0.0 6e-14 52.2 0.0 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 BAD86210.1 - 7.8e-12 45.5 0.7 1.5e-10 41.3 0.7 2.1 1 1 0 1 1 1 1 AAA domain MipZ PF09140.11 BAD86210.1 - 3e-07 30.0 0.6 2.4e-06 27.0 0.6 2.0 1 1 0 1 1 1 1 ATPase MipZ ArsA_ATPase PF02374.15 BAD86210.1 - 1.3e-06 27.8 0.3 5.5e-05 22.5 0.3 2.3 2 0 0 2 2 2 1 Anion-transporting ATPase Fer4_NifH PF00142.18 BAD86210.1 - 1.9e-06 27.6 0.7 8.9e-06 25.3 0.7 1.9 1 1 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_25 PF13481.6 BAD86210.1 - 9.3e-05 22.1 0.0 0.00017 21.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain APS_kinase PF01583.20 BAD86210.1 - 0.00019 21.3 0.0 0.00031 20.7 0.0 1.4 1 0 0 1 1 1 1 Adenylylsulphate kinase PhnA_Zn_Ribbon PF08274.12 BAD86210.1 - 0.0053 16.7 0.1 0.0077 16.2 0.1 1.2 1 0 0 1 1 1 1 PhnA Zinc-Ribbon RsgA_GTPase PF03193.16 BAD86210.1 - 0.0078 16.1 0.0 0.016 15.1 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase CLP1_P PF16575.5 BAD86210.1 - 0.0089 15.8 0.0 0.019 14.7 0.0 1.6 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop RecA PF00154.21 BAD86210.1 - 0.0093 15.5 0.0 0.015 14.8 0.0 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_18 PF13238.6 BAD86210.1 - 0.012 16.2 0.0 0.024 15.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain MeaB PF03308.16 BAD86210.1 - 0.018 14.1 0.1 0.043 12.8 0.0 1.7 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB VirC1 PF07015.11 BAD86210.1 - 0.029 13.6 0.1 0.049 12.9 0.1 1.3 1 0 0 1 1 1 0 VirC1 protein DAP3 PF10236.9 BAD86210.1 - 0.036 13.2 0.1 0.062 12.5 0.1 1.3 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 AAA_16 PF13191.6 BAD86210.1 - 0.041 14.3 0.0 0.082 13.3 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain DnaB_C PF03796.15 BAD86210.1 - 0.049 13.0 0.0 0.073 12.4 0.0 1.2 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain CBP_BcsQ PF06564.12 BAD86210.1 - 0.061 12.8 0.2 0.17 11.3 0.1 1.7 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsQ NB-ARC PF00931.22 BAD86210.1 - 0.063 12.4 0.1 0.32 10.2 0.0 2.0 2 0 0 2 2 2 0 NB-ARC domain DHO_dh PF01180.21 BAD86210.1 - 0.064 12.5 0.0 0.1 11.8 0.0 1.3 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase zinc_ribbon_2 PF13240.6 BAD86210.1 - 0.087 12.6 0.2 0.14 11.9 0.2 1.3 1 0 0 1 1 1 0 zinc-ribbon domain SRP54 PF00448.22 BAD86210.1 - 0.12 12.0 0.3 0.26 10.9 0.3 1.6 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain RNA_helicase PF00910.22 BAD86210.1 - 0.12 12.8 0.0 0.34 11.3 0.0 1.8 1 0 0 1 1 1 0 RNA helicase NTPase_1 PF03266.15 BAD86210.1 - 0.13 12.2 0.0 0.28 11.1 0.0 1.5 1 0 0 1 1 1 0 NTPase DUF2110 PF09883.9 BAD86212.1 - 1.5e-73 247.1 0.0 1.6e-73 247.0 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2110) Img2 PF05046.14 BAD86212.1 - 0.095 13.0 0.4 0.34 11.2 0.1 2.1 2 0 0 2 2 2 0 Mitochondrial large subunit ribosomal protein (Img2) TFIIE_alpha PF02002.17 BAD86213.1 - 1.7e-24 85.7 3.4 1.7e-24 85.7 3.4 1.7 2 0 0 2 2 2 1 TFIIE alpha subunit HTH_Crp_2 PF13545.6 BAD86213.1 - 0.00058 19.8 0.1 0.0015 18.4 0.1 1.8 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_IclR PF09339.10 BAD86213.1 - 0.0019 18.0 0.0 0.0037 17.0 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 BAD86213.1 - 0.0038 17.1 0.1 0.009 15.9 0.1 1.8 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Sigma70_r3 PF04539.16 BAD86213.1 - 0.0043 17.1 0.1 0.0043 17.1 0.1 2.2 3 1 0 3 3 3 1 Sigma-70 region 3 GntR PF00392.21 BAD86213.1 - 0.005 16.5 1.7 0.058 13.0 0.1 2.5 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family PLC-beta_C PF08703.10 BAD86213.1 - 0.0051 16.8 0.3 0.0051 16.8 0.3 2.5 3 0 0 3 3 3 1 PLC-beta C terminal HTH_5 PF01022.20 BAD86213.1 - 0.0056 16.5 0.4 0.012 15.4 0.0 1.7 2 0 0 2 2 1 1 Bacterial regulatory protein, arsR family Rrf2 PF02082.20 BAD86213.1 - 0.014 15.7 0.0 0.029 14.7 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator HTH_23 PF13384.6 BAD86213.1 - 0.015 15.1 0.0 0.031 14.1 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain Sdh5 PF03937.16 BAD86213.1 - 0.02 14.8 0.3 0.25 11.3 0.0 2.4 1 1 1 2 2 2 0 Flavinator of succinate dehydrogenase HTH_9 PF08221.11 BAD86213.1 - 0.029 14.5 0.0 0.056 13.5 0.0 1.4 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain TF_Zn_Ribbon PF08271.12 BAD86213.1 - 0.034 13.7 0.1 0.088 12.3 0.1 1.8 2 0 0 2 2 2 0 TFIIB zinc-binding HTH_29 PF13551.6 BAD86213.1 - 0.036 14.1 0.6 0.24 11.4 0.0 2.3 2 0 0 2 2 2 0 Winged helix-turn helix Sigma70_r4_2 PF08281.12 BAD86213.1 - 0.049 13.3 0.7 4 7.2 0.1 3.0 3 0 0 3 3 3 0 Sigma-70, region 4 UPF0167 PF03691.14 BAD86213.1 - 0.1 12.4 1.2 0.2 11.4 0.5 1.7 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0167) HTH_DeoR PF08220.12 BAD86213.1 - 0.12 12.2 0.1 0.32 10.8 0.1 1.8 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Rad50_zn_hook PF04423.14 BAD86213.1 - 0.13 12.1 0.2 0.13 12.1 0.2 3.3 3 1 0 3 3 3 0 Rad50 zinc hook motif Prefoldin_2 PF01920.20 BAD86213.1 - 0.14 12.1 0.3 0.14 12.1 0.3 3.1 3 0 0 3 3 3 0 Prefoldin subunit ABC_tran PF00005.27 BAD86215.1 - 7.9e-30 104.2 0.0 1.4e-29 103.4 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 BAD86215.1 - 1.2e-10 41.7 0.9 2.6e-06 27.5 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 BAD86215.1 - 3.9e-07 30.7 1.3 8.3e-07 29.6 0.3 2.2 2 1 0 2 2 2 1 Domain of unknown function (DUF4162) SRP54 PF00448.22 BAD86215.1 - 0.0006 19.5 0.0 0.0035 17.0 0.0 2.1 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_29 PF13555.6 BAD86215.1 - 0.0022 17.7 0.0 0.0055 16.4 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 BAD86215.1 - 0.0029 18.1 0.9 0.0054 17.3 1.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 BAD86215.1 - 0.0045 16.8 0.0 0.48 10.1 0.0 2.2 1 1 0 2 2 2 1 AAA ATPase domain AAA_30 PF13604.6 BAD86215.1 - 0.0066 16.2 0.0 0.016 14.9 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 BAD86215.1 - 0.023 15.0 0.1 0.11 12.7 0.1 2.1 1 1 1 2 2 2 0 AAA domain AAA_19 PF13245.6 BAD86215.1 - 0.023 15.0 0.0 0.042 14.2 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 BAD86215.1 - 0.027 14.9 0.3 0.23 11.9 0.3 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 BAD86215.1 - 0.037 13.9 0.0 0.067 13.1 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain NTPase_1 PF03266.15 BAD86215.1 - 0.1 12.5 2.2 1 9.2 0.0 2.5 2 1 1 3 3 3 0 NTPase AAA_16 PF13191.6 BAD86215.1 - 0.13 12.6 0.1 0.25 11.7 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_24 PF13479.6 BAD86215.1 - 0.17 11.5 0.1 0.49 10.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain ABC2_membrane PF01061.24 BAD86216.1 - 1.9e-16 60.1 29.7 1.9e-16 60.1 29.7 2.3 2 1 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 BAD86216.1 - 1.9e-09 37.1 32.1 1.9e-09 37.1 32.1 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 BAD86217.1 - 7.9e-17 61.4 15.9 7.9e-17 61.4 15.9 1.8 1 1 1 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 BAD86217.1 - 6.5e-09 35.4 20.8 6.5e-09 35.4 20.8 1.7 1 1 1 2 2 2 1 ABC-2 family transporter protein DUF3533 PF12051.8 BAD86217.1 - 0.46 9.3 8.2 0.63 8.9 8.2 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3533) PfkB PF00294.24 BAD86218.1 - 1.5e-44 152.6 0.0 1.9e-44 152.2 0.0 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase HTH_11 PF08279.12 BAD86219.1 - 0.018 15.0 0.0 0.034 14.1 0.0 1.5 1 0 0 1 1 1 0 HTH domain Acylphosphatase PF00708.18 BAD86220.1 - 2.9e-28 98.1 0.0 3.2e-28 98.0 0.0 1.0 1 0 0 1 1 1 1 Acylphosphatase CutA1 PF03091.15 BAD86221.1 - 5e-30 103.3 0.8 5.5e-30 103.2 0.8 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein GHL6 PF14871.6 BAD86221.1 - 0.029 14.5 0.4 0.045 13.9 0.4 1.4 1 1 0 1 1 1 0 Hypothetical glycosyl hydrolase 6 DUF99 PF01949.16 BAD86222.1 - 2.4e-64 216.1 0.1 2.7e-64 215.9 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 Usp PF00582.26 BAD86223.1 - 9.3e-40 136.4 2.1 4.7e-21 75.8 0.0 2.8 2 1 0 2 2 2 2 Universal stress protein family PTS_IIB PF02302.17 BAD86223.1 - 0.023 15.4 1.3 2.7 8.8 0.3 2.3 2 0 0 2 2 2 0 PTS system, Lactose/Cellobiose specific IIB subunit PEP-utilizers_C PF02896.18 BAD86223.1 - 0.058 12.5 1.3 1.9 7.6 0.3 2.1 2 0 0 2 2 2 0 PEP-utilising enzyme, TIM barrel domain CshA_NR2 PF18651.1 BAD86223.1 - 0.12 11.6 0.0 0.18 11.0 0.0 1.2 1 0 0 1 1 1 0 Surface adhesin CshA non-repetitive domain 2 IF2_N PF04760.15 BAD86223.1 - 0.89 9.4 5.3 4.8 7.1 0.1 3.3 4 0 0 4 4 4 0 Translation initiation factor IF-2, N-terminal region GCV_T PF01571.21 BAD86224.1 - 1.9e-97 325.7 0.0 2.3e-97 325.4 0.0 1.1 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.11 BAD86224.1 - 1.1e-22 79.7 0.1 2.2e-22 78.8 0.1 1.4 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain EamA PF00892.20 BAD86225.1 - 4.5e-37 127.3 26.5 1.4e-20 73.9 3.5 2.0 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.16 BAD86225.1 - 0.13 11.6 7.0 0.4 10.0 2.0 3.0 2 1 1 3 3 3 0 Triose-phosphate Transporter family Peptidase_S24 PF00717.23 BAD86226.1 - 8.1e-07 28.9 0.2 1.5e-06 28.0 0.2 1.5 2 0 0 2 2 2 1 Peptidase S24-like DUF531 PF04407.12 BAD86227.1 - 1.4e-77 259.6 0.0 1.7e-77 259.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF531) SPOUT_MTase_2 PF14419.6 BAD86227.1 - 0.063 12.6 0.0 0.096 12.0 0.0 1.3 1 0 0 1 1 1 0 AF2226-like SPOUT RNA Methylase fused to THUMP TPR_1 PF00515.28 BAD86228.1 - 3e-07 30.0 4.6 0.0038 17.0 0.3 4.8 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_14 PF13428.6 BAD86228.1 - 1e-06 29.1 8.5 0.2 12.6 0.2 4.9 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_12 PF13424.6 BAD86228.1 - 1.1e-06 28.8 6.1 0.0045 17.3 0.2 4.1 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_2 PF07719.17 BAD86228.1 - 2.5e-05 24.1 13.5 0.036 14.2 0.3 5.5 6 0 0 6 6 6 2 Tetratricopeptide repeat DnaB_bind PF10410.9 BAD86228.1 - 0.002 18.3 10.2 0.11 12.8 0.7 4.2 4 1 1 5 5 5 1 DnaB-helicase binding domain of primase TPR_10 PF13374.6 BAD86228.1 - 0.0032 17.3 7.2 1.8 8.5 0.2 4.9 4 1 0 4 4 4 1 Tetratricopeptide repeat TPR_7 PF13176.6 BAD86228.1 - 0.0035 17.3 4.0 0.66 10.1 0.1 4.4 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_19 PF14559.6 BAD86228.1 - 0.018 15.5 6.1 29 5.3 0.1 4.4 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_8 PF13181.6 BAD86228.1 - 0.025 14.8 8.6 0.36 11.2 0.2 5.2 5 1 1 6 6 6 0 Tetratricopeptide repeat TPR_11 PF13414.6 BAD86228.1 - 0.035 13.8 0.9 9.5 6.0 0.1 4.2 4 0 0 4 4 4 0 TPR repeat TPR_16 PF13432.6 BAD86228.1 - 0.071 13.8 14.1 1.3 9.8 0.3 4.4 5 0 0 5 5 4 0 Tetratricopeptide repeat TPR_6 PF13174.6 BAD86228.1 - 0.42 11.4 10.2 15 6.5 0.2 4.8 5 0 0 5 5 4 0 Tetratricopeptide repeat Peptidase_M19 PF01244.21 BAD86229.1 - 5.7e-92 308.3 0.0 6.4e-92 308.1 0.0 1.0 1 0 0 1 1 1 1 Membrane dipeptidase (Peptidase family M19) MEIOC PF15189.6 BAD86229.1 - 0.019 14.6 0.0 0.036 13.7 0.0 1.4 1 0 0 1 1 1 0 Meiosis-specific coiled-coil domain-containing protein MEIOC Neural_ProG_Cyt PF06567.11 BAD86229.1 - 0.1 12.8 0.0 0.18 12.0 0.0 1.3 1 0 0 1 1 1 0 Neural chondroitin sulphate proteoglycan cytoplasmic domain DUF1771 PF08590.10 BAD86230.1 - 0.14 12.6 0.1 0.21 12.0 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1771) ATPase PF06745.13 BAD86231.1 - 2.8e-52 177.4 0.0 3.2e-52 177.2 0.0 1.0 1 0 0 1 1 1 1 KaiC GvpD PF07088.11 BAD86231.1 - 1.7e-07 30.3 0.0 5.5e-05 22.0 0.0 2.1 2 0 0 2 2 2 2 GvpD gas vesicle protein AAA_25 PF13481.6 BAD86231.1 - 2.2e-07 30.7 0.0 3.4e-07 30.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain DnaB_C PF03796.15 BAD86231.1 - 0.00011 21.6 0.0 0.0028 17.0 0.0 2.1 2 0 0 2 2 2 1 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 BAD86231.1 - 0.00044 20.0 0.0 0.00066 19.4 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_14 PF13173.6 BAD86231.1 - 0.0026 17.8 0.0 0.0043 17.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 BAD86231.1 - 0.0031 18.1 0.1 0.017 15.7 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 BAD86231.1 - 0.0034 17.6 0.0 0.0055 17.0 0.0 1.4 1 1 0 1 1 1 1 AAA domain RecA PF00154.21 BAD86231.1 - 0.0045 16.5 0.1 0.0079 15.7 0.1 1.3 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_24 PF13479.6 BAD86231.1 - 0.005 16.6 0.1 0.0085 15.8 0.1 1.5 1 1 0 1 1 1 1 AAA domain T2SSE PF00437.20 BAD86231.1 - 0.011 14.8 0.0 0.018 14.1 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein DUF2075 PF09848.9 BAD86231.1 - 0.015 14.5 0.0 0.021 14.1 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_29 PF13555.6 BAD86231.1 - 0.02 14.6 0.3 0.042 13.6 0.3 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain MeaB PF03308.16 BAD86231.1 - 0.024 13.6 0.0 0.039 12.9 0.0 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB ATPase_2 PF01637.18 BAD86231.1 - 0.033 14.1 0.0 0.044 13.7 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea Zot PF05707.12 BAD86231.1 - 0.038 13.6 0.0 0.24 11.0 0.0 2.2 1 1 0 1 1 1 0 Zonular occludens toxin (Zot) cobW PF02492.19 BAD86231.1 - 0.051 13.2 0.0 0.081 12.5 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_33 PF13671.6 BAD86231.1 - 0.072 13.3 0.0 0.12 12.5 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.6 BAD86231.1 - 0.077 13.3 0.1 0.17 12.2 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_11 PF13086.6 BAD86231.1 - 0.08 12.7 0.0 0.11 12.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 BAD86231.1 - 0.093 12.6 0.1 0.16 11.9 0.1 1.4 1 0 0 1 1 1 0 NTPase DUF4342 PF14242.6 BAD86231.1 - 0.097 12.7 0.2 0.21 11.6 0.2 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4342) MEDS PF14417.6 BAD86231.1 - 0.11 12.4 0.0 0.17 11.7 0.0 1.5 1 1 0 1 1 1 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain NACHT PF05729.12 BAD86231.1 - 0.12 12.3 0.1 0.39 10.6 0.0 1.8 2 0 0 2 2 2 0 NACHT domain AAA_16 PF13191.6 BAD86231.1 - 0.16 12.3 0.4 0.22 11.9 0.4 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_23 PF13476.6 BAD86231.1 - 0.22 12.0 0.3 0.37 11.2 0.3 1.3 1 0 0 1 1 1 0 AAA domain DUF257 PF03192.13 BAD86232.1 - 1.6e-27 96.7 0.9 1.8e-27 96.5 0.9 1.0 1 0 0 1 1 1 1 Pyrococcus protein of unknown function, DUF257 DUF257 PF03192.13 BAD86233.1 - 5.4e-69 232.1 0.0 6.1e-69 231.9 0.0 1.0 1 0 0 1 1 1 1 Pyrococcus protein of unknown function, DUF257 PapG_C PF03628.13 BAD86233.1 - 0.055 13.3 0.0 0.095 12.6 0.0 1.4 1 0 0 1 1 1 0 PapG chaperone-binding domain Methyltransf_25 PF13649.6 BAD86234.1 - 1.2e-09 38.7 0.0 2e-09 38.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 BAD86234.1 - 1.7e-09 38.2 0.0 3.1e-09 37.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 BAD86234.1 - 2.6e-08 33.7 0.0 3.7e-08 33.2 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_23 PF13489.6 BAD86234.1 - 2e-07 31.0 0.0 3.3e-07 30.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 BAD86234.1 - 2.5e-07 30.4 0.0 4.1e-07 29.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Spermine_synth PF01564.17 BAD86234.1 - 9.3e-07 28.4 0.0 1.3e-06 27.9 0.0 1.2 1 0 0 1 1 1 1 Spermine/spermidine synthase domain Methyltransf_31 PF13847.6 BAD86234.1 - 1.1e-06 28.5 0.0 1.6e-06 28.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 BAD86234.1 - 3.4e-06 26.7 0.0 5.5e-06 26.1 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase N6_N4_Mtase PF01555.18 BAD86234.1 - 1e-05 25.4 0.0 0.0017 18.1 0.0 2.7 3 0 0 3 3 3 1 DNA methylase Met_10 PF02475.16 BAD86234.1 - 0.00017 21.4 0.0 0.00028 20.7 0.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_30 PF05430.11 BAD86234.1 - 0.0002 21.2 0.0 0.00048 20.0 0.0 1.6 1 0 0 1 1 1 1 S-adenosyl-L-methionine-dependent methyltransferase Ubie_methyltran PF01209.18 BAD86234.1 - 0.00025 20.5 0.0 0.00046 19.6 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family UPF0020 PF01170.18 BAD86234.1 - 0.00071 19.3 0.0 0.0011 18.7 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_3 PF01596.17 BAD86234.1 - 0.0016 17.7 0.0 0.0028 16.9 0.0 1.3 1 0 0 1 1 1 1 O-methyltransferase PCMT PF01135.19 BAD86234.1 - 0.0024 17.6 0.0 0.0057 16.4 0.0 1.6 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_24 PF13578.6 BAD86234.1 - 0.0025 18.8 0.0 0.0053 17.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 BAD86234.1 - 0.078 12.0 0.0 0.11 11.6 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase HepII_C PF18675.1 BAD86234.1 - 0.082 13.0 0.0 0.17 12.0 0.0 1.5 1 0 0 1 1 1 0 Heparinase II C-terminal domain YdjM PF04307.14 BAD86235.1 - 7.1e-12 45.0 5.4 3.2e-07 29.8 1.9 2.2 2 0 0 2 2 2 2 LexA-binding, inner membrane-associated putative hydrolase tRNA_anti-codon PF01336.25 BAD86235.1 - 8.8e-05 22.4 0.6 0.00047 20.1 0.3 2.1 1 1 1 2 2 2 1 OB-fold nucleic acid binding domain tRNA_anti_2 PF13742.6 BAD86235.1 - 0.029 14.5 0.0 0.16 12.2 0.0 2.0 1 1 0 1 1 1 0 OB-fold nucleic acid binding domain HIN PF02760.15 BAD86235.1 - 0.14 11.9 0.2 0.27 11.0 0.2 1.5 1 0 0 1 1 1 0 HIN-200/IF120x domain TctA PF01970.16 BAD86236.1 - 7.7e-51 173.1 39.5 9e-51 172.9 39.5 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family tRNA_anti-codon PF01336.25 BAD86237.1 - 1.7e-31 108.0 10.9 4.2e-05 23.4 0.7 9.8 10 0 0 10 10 10 7 OB-fold nucleic acid binding domain tRNA_anti_2 PF13742.6 BAD86237.1 - 7.2e-14 51.8 2.5 1.6 9.0 0.0 7.8 8 0 0 8 8 8 5 OB-fold nucleic acid binding domain RMI1_C PF16099.5 BAD86237.1 - 1.3e-08 34.7 0.6 0.2 11.5 0.0 4.4 5 0 0 5 5 5 3 Recq-mediated genome instability protein 1, C-terminal OB-fold CcmE PF03100.15 BAD86237.1 - 0.00036 20.5 2.4 0.0029 17.6 0.1 3.2 3 1 1 4 4 4 1 CcmE DUF4131 PF13567.6 BAD86237.1 - 0.026 14.2 1.6 0.55 9.9 0.0 3.5 4 0 0 4 4 4 0 Domain of unknown function (DUF4131) HIN PF02760.15 BAD86237.1 - 0.18 11.5 0.1 28 4.4 0.0 3.8 4 0 0 4 4 4 0 HIN-200/IF120x domain HlyD_3 PF13437.6 BAD86237.1 - 2.9 8.6 6.1 4.6 8.0 0.0 4.3 6 0 0 6 6 6 0 HlyD family secretion protein Peptidase_S9 PF00326.21 BAD86238.1 - 1.4e-53 181.5 0.0 2.1e-53 181.0 0.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family Peptidase_S15 PF02129.18 BAD86238.1 - 1.8e-11 44.1 0.0 1e-07 31.9 0.0 2.3 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) AXE1 PF05448.12 BAD86238.1 - 4.4e-07 28.9 0.2 0.0013 17.5 0.2 3.2 2 1 0 2 2 2 1 Acetyl xylan esterase (AXE1) DLH PF01738.18 BAD86238.1 - 3.7e-05 23.4 0.0 7.6e-05 22.4 0.0 1.5 1 1 0 1 1 1 1 Dienelactone hydrolase family Hydrolase_4 PF12146.8 BAD86238.1 - 0.00021 20.7 0.1 0.012 14.9 0.1 2.1 2 0 0 2 2 2 1 Serine aminopeptidase, S33 PD40 PF07676.12 BAD86238.1 - 0.00057 19.7 0.0 0.0019 18.1 0.0 1.9 1 0 0 1 1 1 1 WD40-like Beta Propeller Repeat Chlorophyllase2 PF12740.7 BAD86238.1 - 0.0016 17.4 0.0 0.0031 16.5 0.0 1.4 1 0 0 1 1 1 1 Chlorophyllase enzyme Abhydrolase_1 PF00561.20 BAD86238.1 - 0.003 17.3 0.0 0.0059 16.3 0.0 1.5 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 BAD86238.1 - 0.01 16.4 0.0 0.019 15.6 0.0 1.5 1 0 0 1 1 1 0 Alpha/beta hydrolase family BAAT_C PF08840.11 BAD86238.1 - 0.014 15.3 0.0 0.13 12.2 0.0 2.2 1 1 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal Peptidase_S9_N PF02897.15 BAD86238.1 - 0.022 13.6 0.4 0.054 12.3 0.2 1.7 1 1 0 1 1 1 0 Prolyl oligopeptidase, N-terminal beta-propeller domain DUF2920 PF11144.8 BAD86238.1 - 0.023 13.9 0.0 2.2 7.3 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2920) Abhydrolase_2 PF02230.16 BAD86238.1 - 0.038 13.8 0.1 4.1 7.1 0.0 3.1 2 1 0 2 2 2 0 Phospholipase/Carboxylesterase PAF-AH_p_II PF03403.13 BAD86238.1 - 0.08 11.4 0.0 1.2 7.6 0.0 2.3 2 0 0 2 2 2 0 Platelet-activating factor acetylhydrolase, isoform II DPPIV_N PF00930.21 BAD86238.1 - 0.11 11.2 0.1 0.54 9.0 0.0 1.9 1 1 1 2 2 2 0 Dipeptidyl peptidase IV (DPP IV) N-terminal region UbiA PF01040.18 BAD86239.1 - 9.9e-06 25.0 1.8 1.1e-05 24.9 1.8 1.0 1 0 0 1 1 1 1 UbiA prenyltransferase family PRA1 PF03208.19 BAD86239.1 - 0.006 16.2 0.9 0.0084 15.7 0.9 1.3 1 0 0 1 1 1 1 PRA1 family protein TraX PF05857.11 BAD86239.1 - 0.0098 16.0 0.8 0.011 15.9 0.8 1.1 1 0 0 1 1 1 1 TraX protein PrgI PF12666.7 BAD86239.1 - 0.021 15.5 3.7 2.4 8.9 0.4 2.2 2 0 0 2 2 2 0 PrgI family protein RseC_MucC PF04246.12 BAD86239.1 - 2.4 8.1 4.1 7 6.6 0.3 2.0 1 1 1 2 2 2 0 Positive regulator of sigma(E), RseC/MucC APH PF01636.23 BAD86240.1 - 0.014 15.3 0.0 0.055 13.4 0.0 1.8 1 1 0 2 2 2 0 Phosphotransferase enzyme family AsnC_trans_reg PF01037.21 BAD86241.1 - 1.2e-19 70.1 0.4 1.3e-19 70.0 0.4 1.0 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HMA PF00403.26 BAD86241.1 - 0.0012 19.2 0.1 0.0015 19.0 0.1 1.1 1 0 0 1 1 1 1 Heavy-metal-associated domain Spore_YhcN_YlaJ PF09580.10 BAD86241.1 - 0.0028 17.7 0.1 0.0035 17.5 0.1 1.2 1 0 0 1 1 1 1 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) NapD PF03927.13 BAD86241.1 - 0.0046 17.0 0.3 0.0053 16.8 0.3 1.1 1 0 0 1 1 1 1 NapD protein GYD PF08734.11 BAD86241.1 - 0.02 14.9 1.0 0.052 13.5 0.6 1.8 1 1 1 2 2 2 0 GYD domain ABC_tran PF00005.27 BAD86242.1 - 1.7e-30 106.3 0.0 2.5e-30 105.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 BAD86242.1 - 1.9e-11 44.3 2.7 1.1e-08 35.3 0.1 2.6 2 1 1 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 BAD86242.1 - 1.6e-07 31.9 0.0 3.7e-07 30.8 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_29 PF13555.6 BAD86242.1 - 0.01 15.6 0.0 0.02 14.7 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain SMC_N PF02463.19 BAD86242.1 - 0.015 14.7 0.0 2 7.8 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 BAD86242.1 - 0.027 15.0 2.4 0.069 13.6 2.1 2.1 1 1 0 1 1 1 0 AAA domain Response_reg PF00072.24 BAD86242.1 - 0.05 13.8 0.1 0.21 11.8 0.0 2.0 3 0 0 3 3 3 0 Response regulator receiver domain MMR_HSR1 PF01926.23 BAD86242.1 - 0.051 13.7 0.3 33 4.6 0.0 3.1 2 1 0 3 3 3 0 50S ribosome-binding GTPase ABC2_membrane_2 PF12679.7 BAD86243.1 - 2.5e-60 204.2 12.5 2.9e-60 204.0 12.5 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 BAD86243.1 - 3.6e-09 36.3 13.3 5.5e-09 35.8 13.3 1.2 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 BAD86243.1 - 4.1e-08 32.7 16.1 4.1e-08 32.7 16.1 1.8 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 BAD86243.1 - 1.3e-06 28.4 11.4 2.1e-06 27.8 11.4 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 BAD86243.1 - 0.025 14.2 16.7 0.51 9.9 16.8 2.6 1 1 0 1 1 1 0 ABC-2 family transporter protein YrhC PF14143.6 BAD86243.1 - 0.026 14.6 0.6 0.026 14.6 0.6 3.8 5 0 0 5 5 5 0 YrhC-like protein DUF3413 PF11893.8 BAD86243.1 - 5.9 6.0 11.1 0.094 11.9 1.0 2.6 1 1 2 3 3 3 0 Domain of unknown function (DUF3413) ABC2_membrane_2 PF12679.7 BAD86244.1 - 4.8e-14 52.3 11.5 4.8e-14 52.3 11.5 3.4 2 2 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 BAD86244.1 - 1.6e-05 24.2 11.7 1.6e-05 24.2 11.7 2.7 2 2 0 2 2 2 1 ABC-2 family transporter protein Oxygenase-NA PF09859.9 BAD86244.1 - 0.23 11.0 0.0 0.37 10.3 0.0 1.2 1 0 0 1 1 1 0 Oxygenase, catalysing oxidative methylation of damaged DNA BPD_transp_1 PF00528.22 BAD86246.1 - 1.1e-13 51.3 11.5 1.1e-13 51.3 11.5 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Pox_I5 PF04713.12 BAD86246.1 - 0.093 12.8 0.3 0.093 12.8 0.3 2.2 2 0 0 2 2 2 0 Poxvirus protein I5 DUF4493 PF14900.6 BAD86248.1 - 0.014 15.2 0.0 0.018 14.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4493) DUF5119 PF17145.4 BAD86248.1 - 0.16 11.9 0.0 0.18 11.7 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5119) PhoU_div PF01865.16 BAD86249.1 - 1.6e-46 158.3 8.1 1.8e-46 158.2 8.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF47 PhoU PF01895.19 BAD86249.1 - 2.2e-07 31.2 11.2 0.00029 21.3 1.5 2.7 2 1 0 2 2 2 2 PhoU domain DUF4128 PF13554.6 BAD86249.1 - 0.12 12.5 0.0 0.71 9.9 0.0 2.0 2 0 0 2 2 2 0 Bacteriophage related domain of unknown function D5_N PF08706.11 BAD86249.1 - 0.16 12.2 1.0 1.6 8.9 1.0 2.1 1 1 0 1 1 1 0 D5 N terminal like ACCA PF03255.14 BAD86249.1 - 0.48 10.3 3.3 0.51 10.2 0.7 2.0 2 0 0 2 2 2 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit PHO4 PF01384.20 BAD86250.1 - 3e-110 368.4 34.4 3.7e-110 368.1 34.4 1.1 1 0 0 1 1 1 1 Phosphate transporter family HTH_IclR PF09339.10 BAD86250.1 - 0.084 12.7 0.0 2.5 8.0 0.0 2.3 2 0 0 2 2 2 0 IclR helix-turn-helix domain Ytca PF17090.5 BAD86250.1 - 0.13 12.8 0.0 0.13 12.8 0.0 3.6 4 0 0 4 4 4 0 Uncharacterised protein family Myc_target_1 PF15179.6 BAD86250.1 - 1.1 9.2 3.8 13 5.6 0.2 2.3 2 0 0 2 2 2 0 Myc target protein 1 CoA_binding_3 PF13727.6 BAD86250.1 - 3.5 7.6 9.3 13 5.8 0.8 2.6 2 0 0 2 2 2 0 CoA-binding domain Metallophos PF00149.28 BAD86251.1 - 1.9e-14 54.6 1.1 4.7e-14 53.4 1.1 1.7 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 BAD86251.1 - 0.00028 21.1 0.0 0.00045 20.5 0.0 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Cupin_2 PF07883.11 BAD86252.1 - 1e-15 57.1 0.7 1.3e-15 56.8 0.7 1.1 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 BAD86252.1 - 1.3e-09 38.0 0.1 1.6e-09 37.7 0.1 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Auxin_BP PF02041.16 BAD86252.1 - 3.4e-05 23.6 0.0 8.5e-05 22.3 0.0 1.6 1 1 0 1 1 1 1 Auxin binding protein MannoseP_isomer PF01050.18 BAD86252.1 - 6.7e-05 22.8 0.0 8.4e-05 22.5 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_1 PF00190.22 BAD86252.1 - 0.00022 20.9 0.0 0.00026 20.6 0.0 1.1 1 0 0 1 1 1 1 Cupin Cupin_3 PF05899.12 BAD86252.1 - 0.0005 19.7 0.0 0.00068 19.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) Ectoine_synth PF06339.12 BAD86252.1 - 0.0016 18.7 0.0 0.0017 18.5 0.0 1.1 1 0 0 1 1 1 1 Ectoine synthase Cupin_7 PF12973.7 BAD86252.1 - 0.0071 16.2 0.1 0.0091 15.9 0.1 1.2 1 0 0 1 1 1 1 ChrR Cupin-like domain PCO_ADO PF07847.12 BAD86252.1 - 0.014 14.8 0.0 0.02 14.3 0.0 1.1 1 0 0 1 1 1 0 PCO_ADO DMSP_lyase PF16867.5 BAD86252.1 - 0.038 13.6 0.4 0.049 13.3 0.4 1.1 1 0 0 1 1 1 0 Dimethlysulfonioproprionate lyase Radical_SAM PF04055.21 BAD86253.1 - 6.3e-26 91.7 0.4 6.9e-23 81.8 0.1 2.2 2 0 0 2 2 2 2 Radical SAM superfamily UPF0004 PF00919.20 BAD86253.1 - 2.6e-21 75.5 0.0 5.5e-21 74.4 0.0 1.5 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM PF01938.20 BAD86253.1 - 1.1e-05 25.3 0.1 2.4e-05 24.2 0.1 1.5 1 0 0 1 1 1 1 TRAM domain TRAM PF01938.20 BAD86254.1 - 9.1e-15 54.4 1.7 1e-14 54.2 1.7 1.1 1 0 0 1 1 1 1 TRAM domain HycI PF01750.18 BAD86255.1 - 1.1e-21 77.0 0.6 1.3e-21 76.7 0.6 1.0 1 0 0 1 1 1 1 Hydrogenase maturation protease PIN PF01850.21 BAD86256.1 - 8.5e-21 74.7 0.0 9.7e-21 74.5 0.0 1.0 1 0 0 1 1 1 1 PIN domain PIN_12 PF16289.5 BAD86256.1 - 0.08 13.4 0.2 0.21 12.0 0.2 1.6 1 1 0 2 2 2 0 PIN domain Trm5_N PF18093.1 BAD86257.1 - 0.011 15.6 0.4 0.023 14.6 0.4 1.5 1 0 0 1 1 1 0 tRNA methyltransferase 5 N-terminal domain MHCassoc_trimer PF08831.10 BAD86257.1 - 0.021 14.8 1.4 0.031 14.3 1.1 1.5 1 1 0 1 1 1 0 Class II MHC-associated invariant chain trimerisation domain NiFeSe_Hases PF00374.19 BAD86258.1 - 1.7e-26 93.2 0.1 7.7e-12 44.9 0.0 3.0 1 1 2 3 3 3 2 Nickel-dependent hydrogenase Oxidored_q6 PF01058.22 BAD86259.1 - 1.7e-26 92.6 0.0 2.9e-26 91.9 0.0 1.4 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit eIF2_C PF09173.11 BAD86259.1 - 0.0062 16.8 0.0 0.012 15.8 0.0 1.5 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal Zn_clus PF00172.18 BAD86259.1 - 2.5 8.3 5.1 7.7 6.7 0.1 2.5 2 0 0 2 2 2 0 Fungal Zn(2)-Cys(6) binuclear cluster domain DHODB_Fe-S_bind PF10418.9 BAD86260.1 - 7.5e-13 48.1 2.1 1.2e-12 47.4 2.1 1.3 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NAD_binding_1 PF00175.21 BAD86260.1 - 2e-12 47.7 0.0 3e-12 47.1 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain FAD_binding_6 PF00970.24 BAD86260.1 - 1.4e-07 31.8 0.0 2.1e-07 31.2 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain NAD_binding_6 PF08030.12 BAD86260.1 - 0.00022 21.4 0.0 0.094 12.8 0.0 2.2 1 1 1 2 2 2 2 Ferric reductase NAD binding domain FAD_binding_8 PF08022.12 BAD86260.1 - 0.083 13.0 0.2 1.1 9.3 0.0 2.7 3 1 0 3 3 3 0 FAD-binding domain Fer4_22 PF17179.4 BAD86261.1 - 6.4e-28 97.4 14.2 1.4e-27 96.4 11.5 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 BAD86261.1 - 2.3e-06 28.1 7.8 0.019 15.5 0.5 2.7 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 BAD86261.1 - 2.5e-06 27.9 11.5 1.2e-05 25.7 11.6 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 BAD86261.1 - 2.8e-06 27.1 12.9 0.01 15.9 2.0 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 BAD86261.1 - 3.5e-06 27.4 11.5 0.0083 16.6 0.8 2.8 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 BAD86261.1 - 6.2e-06 26.2 12.8 0.0049 17.0 1.8 2.7 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 BAD86261.1 - 1.4e-05 24.7 13.6 0.0045 16.7 3.4 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 BAD86261.1 - 0.00028 21.0 14.4 0.013 15.7 2.2 3.0 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.7 BAD86261.1 - 0.00032 21.0 1.3 0.00032 21.0 1.3 3.2 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_16 PF13484.6 BAD86261.1 - 0.0006 20.7 7.9 0.096 13.6 0.5 2.7 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 BAD86261.1 - 0.0035 17.4 13.5 0.22 11.7 1.5 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 BAD86261.1 - 0.0047 17.0 19.4 0.038 14.1 2.9 2.9 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 BAD86261.1 - 0.0051 17.0 2.8 0.6 10.3 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 BAD86261.1 - 1.7 9.2 11.6 6.3 7.4 3.5 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_7 PF12838.7 BAD86262.1 - 6.7e-10 39.4 8.8 6.7e-10 39.4 8.8 2.6 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 BAD86262.1 - 1.3e-08 35.7 10.2 0.00062 20.6 0.4 2.4 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4 PF00037.27 BAD86262.1 - 2.4e-07 30.3 3.9 2.4e-07 30.3 3.9 4.3 4 1 0 4 4 4 2 4Fe-4S binding domain Fer4_6 PF12837.7 BAD86262.1 - 4.8e-07 29.6 13.5 7.5e-05 22.6 4.4 3.5 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_21 PF14697.6 BAD86262.1 - 3.7e-06 27.0 5.5 3.7e-06 27.0 5.5 2.1 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 BAD86262.1 - 8.5e-06 25.8 22.9 0.00051 20.1 12.2 3.0 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 BAD86262.1 - 2.8e-05 24.1 11.8 2.8e-05 24.1 11.8 2.9 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 BAD86262.1 - 4.9e-05 23.2 19.6 0.00023 21.1 1.9 3.8 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_4 PF12800.7 BAD86262.1 - 0.00085 19.6 1.2 0.00085 19.6 1.2 3.9 4 1 0 4 4 4 1 4Fe-4S binding domain Fer4_17 PF13534.6 BAD86262.1 - 0.0011 19.4 17.0 0.0053 17.3 1.5 3.1 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 BAD86262.1 - 0.0066 16.9 17.7 0.011 16.1 1.7 2.8 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_3 PF12798.7 BAD86262.1 - 0.041 14.8 23.9 0.091 13.7 6.2 3.3 3 0 0 3 3 3 0 4Fe-4S binding domain Ribosomal_L34e PF01199.18 BAD86262.1 - 0.094 13.0 1.3 0.33 11.3 0.1 2.1 2 0 0 2 2 2 0 Ribosomal protein L34e Mut7-C PF01927.16 BAD86262.1 - 0.13 12.3 0.4 0.13 12.3 0.4 1.7 1 1 1 2 2 2 0 Mut7-C RNAse domain Stig1 PF04885.13 BAD86262.1 - 2 8.9 11.6 0.38 11.2 6.5 2.1 3 0 0 3 3 3 0 Stigma-specific protein, Stig1 zf-ZPR1 PF03367.13 BAD86262.1 - 3.7 7.4 8.0 0.9 9.4 2.5 2.3 2 1 1 3 3 3 0 ZPR1 zinc-finger domain zf-C2H2_6 PF13912.6 BAD86262.1 - 7.3 6.7 8.4 4.8 7.3 0.1 2.9 3 0 0 3 3 3 0 C2H2-type zinc finger Fer4_15 PF13459.6 BAD86262.1 - 8.4 7.2 12.3 98 3.8 10.4 2.7 2 1 0 2 2 2 0 4Fe-4S single cluster domain Pyr_redox_2 PF07992.14 BAD86263.1 - 4.3e-37 127.9 0.0 5.4e-37 127.6 0.0 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 BAD86263.1 - 4e-13 49.3 0.0 1.4e-09 37.7 0.0 3.1 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 BAD86263.1 - 2.1e-07 31.4 1.0 0.0035 17.9 0.1 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 BAD86263.1 - 5.7e-07 29.7 0.2 3.6e-06 27.1 0.0 2.2 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FMO-like PF00743.19 BAD86263.1 - 1.4e-06 27.1 0.0 0.0015 17.1 0.0 2.1 2 0 0 2 2 2 2 Flavin-binding monooxygenase-like AlaDh_PNT_C PF01262.21 BAD86263.1 - 1.2e-05 24.7 0.0 0.14 11.4 0.0 2.3 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_2 PF00890.24 BAD86263.1 - 1.3e-05 24.5 2.8 0.033 13.3 0.1 4.2 4 1 1 5 5 5 1 FAD binding domain HI0933_like PF03486.14 BAD86263.1 - 0.00029 19.7 0.5 0.00069 18.4 0.1 1.9 2 0 0 2 2 2 1 HI0933-like protein FAD_oxidored PF12831.7 BAD86263.1 - 0.00031 20.2 0.2 0.23 10.8 0.0 3.0 3 0 0 3 3 3 1 FAD dependent oxidoreductase GIDA PF01134.22 BAD86263.1 - 0.00044 19.5 1.5 0.49 9.4 0.1 2.8 3 0 0 3 3 3 2 Glucose inhibited division protein A DAO PF01266.24 BAD86263.1 - 0.00052 19.7 0.5 0.33 10.5 0.2 2.9 3 0 0 3 3 3 1 FAD dependent oxidoreductase Shikimate_DH PF01488.20 BAD86263.1 - 0.00082 19.4 0.0 3 7.9 0.0 3.1 3 0 0 3 3 3 1 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.6 BAD86263.1 - 0.001 19.5 0.1 1.2 9.7 0.0 2.5 2 1 0 2 2 2 2 Putative NAD(P)-binding FAD_binding_3 PF01494.19 BAD86263.1 - 0.0021 17.4 1.8 0.0029 16.9 0.1 1.9 2 1 1 3 3 3 1 FAD binding domain 2-Hacid_dh_C PF02826.19 BAD86263.1 - 0.01 15.2 0.0 0.83 9.0 0.0 2.8 3 0 0 3 3 3 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Thi4 PF01946.17 BAD86263.1 - 0.02 14.1 0.1 0.11 11.7 0.0 2.0 2 0 0 2 2 2 0 Thi4 family K_oxygenase PF13434.6 BAD86263.1 - 0.036 13.2 0.0 0.56 9.3 0.0 2.3 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) 3HCDH_N PF02737.18 BAD86263.1 - 0.056 13.3 0.1 0.19 11.6 0.0 1.8 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain MCRA PF06100.11 BAD86263.1 - 0.078 11.8 0.0 0.1 11.3 0.0 1.1 1 0 0 1 1 1 0 MCRA family NAD_binding_9 PF13454.6 BAD86263.1 - 0.098 12.6 0.4 0.42 10.6 0.2 2.2 3 0 0 3 3 3 0 FAD-NAD(P)-binding Fer4_11 PF13247.6 BAD86264.1 - 1.8e-27 95.4 9.4 3e-27 94.7 9.4 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 BAD86264.1 - 6e-14 51.2 40.1 7.9e-07 28.6 3.7 5.6 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_6 PF12837.7 BAD86264.1 - 4.1e-11 42.5 40.7 4.5e-06 26.5 3.0 5.0 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_7 PF12838.7 BAD86264.1 - 4.2e-10 40.1 32.1 2.8e-05 24.6 13.5 4.2 1 1 4 5 5 5 5 4Fe-4S dicluster domain Fer4_9 PF13187.6 BAD86264.1 - 5.8e-10 39.2 48.2 8.2e-06 25.9 10.0 3.2 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_10 PF13237.6 BAD86264.1 - 2.8e-09 36.9 31.3 1e-05 25.5 13.5 3.8 1 1 3 4 4 4 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 BAD86264.1 - 8.5e-08 31.8 35.1 0.00011 22.0 1.7 4.4 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_16 PF13484.6 BAD86264.1 - 7.3e-07 30.0 29.7 0.32 12.0 0.1 5.0 3 1 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 BAD86264.1 - 4.2e-05 24.0 27.3 0.08 13.5 1.5 4.5 3 2 1 4 4 4 3 4Fe-4S dicluster domain Fer4_3 PF12798.7 BAD86264.1 - 0.00012 22.7 42.2 0.28 12.2 3.4 4.3 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_21 PF14697.6 BAD86264.1 - 0.00068 19.7 28.9 0.0091 16.1 11.3 3.8 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_8 PF13183.6 BAD86264.1 - 0.013 15.9 26.6 0.72 10.3 0.4 4.4 3 1 1 4 4 4 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 BAD86264.1 - 0.013 15.9 1.6 0.013 15.9 1.6 4.5 5 0 0 5 5 5 0 4Fe-4S binding domain Fer4_15 PF13459.6 BAD86264.1 - 0.8 10.5 24.7 1.8 9.4 8.3 4.0 2 2 0 2 2 2 0 4Fe-4S single cluster domain Molybdopterin PF00384.22 BAD86265.1 - 2.2e-93 313.6 0.0 2.8e-93 313.2 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 BAD86265.1 - 2.9e-30 104.6 0.4 7.6e-30 103.2 0.1 1.9 2 0 0 2 2 2 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 BAD86265.1 - 6.7e-10 38.8 0.1 1.5e-09 37.7 0.1 1.6 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Fer4_11 PF13247.6 BAD86266.1 - 1.1e-25 89.7 7.8 1.1e-25 89.7 7.8 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 BAD86266.1 - 4.1e-12 46.5 27.0 6.5e-06 26.7 12.0 3.4 2 1 2 4 4 4 4 4Fe-4S dicluster domain Fer4 PF00037.27 BAD86266.1 - 5.9e-11 41.7 37.0 0.00047 19.8 3.4 5.4 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_9 PF13187.6 BAD86266.1 - 8.1e-10 38.7 26.9 0.0001 22.4 7.2 2.5 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 BAD86266.1 - 1.7e-08 34.5 29.3 5.2e-05 23.3 8.9 3.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 BAD86266.1 - 2.8e-08 33.4 28.2 0.0027 17.7 2.3 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_6 PF12837.7 BAD86266.1 - 4.8e-08 32.7 37.0 0.0041 17.1 2.6 4.9 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_21 PF14697.6 BAD86266.1 - 1.8e-06 28.0 28.1 3.8e-05 23.7 8.2 3.7 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 BAD86266.1 - 4.7e-06 27.4 27.1 0.055 14.4 2.4 4.7 4 1 1 5 5 5 4 4Fe-4S double cluster binding domain Fer4_3 PF12798.7 BAD86266.1 - 2.1e-05 25.1 39.4 0.039 14.9 4.9 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_4 PF12800.7 BAD86266.1 - 0.00046 20.5 31.7 0.02 15.4 3.0 4.6 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_17 PF13534.6 BAD86266.1 - 0.001 19.6 27.2 0.16 12.5 1.4 4.4 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_8 PF13183.6 BAD86266.1 - 0.21 12.1 33.1 0.95 10.0 13.8 4.1 2 2 0 3 3 3 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 BAD86266.1 - 5.2 7.3 27.2 1.2 9.3 5.0 3.9 1 1 3 4 4 4 0 4Fe-4S dicluster domain Fer4 PF00037.27 BAD86267.1 - 1.1e-13 50.4 25.5 7e-11 41.5 4.3 3.6 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_7 PF12838.7 BAD86267.1 - 1.3e-13 51.3 7.9 1.3e-13 51.3 7.9 2.6 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 BAD86267.1 - 5.3e-13 48.4 27.4 7.3e-10 38.5 3.8 3.9 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_9 PF13187.6 BAD86267.1 - 1.1e-12 47.9 36.9 4.1e-09 36.5 10.4 2.9 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 BAD86267.1 - 1.4e-11 44.4 25.0 1.1e-09 38.2 12.0 2.7 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 BAD86267.1 - 2.4e-11 43.6 9.4 2.4e-11 43.6 9.4 2.3 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 BAD86267.1 - 2.5e-09 38.0 14.1 0.00025 21.9 0.4 2.7 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 BAD86267.1 - 1.4e-07 31.1 3.7 1.4e-07 31.1 3.7 4.0 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_17 PF13534.6 BAD86267.1 - 1.4e-05 25.5 17.2 0.0033 17.9 12.0 3.2 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 BAD86267.1 - 2.2e-05 24.8 17.5 0.00022 21.6 13.0 3.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 BAD86267.1 - 5.3e-05 23.4 1.8 5.3e-05 23.4 1.8 3.7 4 0 0 4 4 3 1 4Fe-4S binding domain Fer4_13 PF13370.6 BAD86267.1 - 0.0018 18.8 13.6 0.0077 16.8 2.8 2.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 BAD86267.1 - 0.0025 18.6 8.0 0.0025 18.6 8.0 3.4 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_15 PF13459.6 BAD86267.1 - 0.0041 17.8 0.6 0.0041 17.8 0.6 3.0 3 2 0 3 3 3 1 4Fe-4S single cluster domain Fer4_18 PF13746.6 BAD86267.1 - 0.02 15.1 14.2 0.3 11.3 2.6 2.6 2 1 1 3 3 3 0 4Fe-4S dicluster domain ETF_QO PF05187.13 BAD86267.1 - 0.042 14.0 3.2 0.073 13.2 2.2 1.9 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S zf-RRPl_C4 PF17026.5 BAD86267.1 - 0.14 12.2 4.2 0.17 12.0 0.1 2.3 1 1 0 2 2 2 0 Putative ribonucleoprotein zinc-finger pf C4 type Fer4_22 PF17179.4 BAD86267.1 - 0.28 12.1 20.2 0.19 12.6 2.7 3.3 2 1 1 4 4 3 0 4Fe-4S dicluster domain NinF PF05810.12 BAD86267.1 - 0.65 9.9 0.0 0.65 9.9 0.0 3.3 4 0 0 4 4 3 0 NinF protein Fer4_19 PF06902.11 BAD86267.1 - 0.73 9.9 6.7 5.3 7.2 1.1 3.3 2 1 1 3 3 3 0 Divergent 4Fe-4S mono-cluster Form_Nir_trans PF01226.17 BAD86268.1 - 3.1e-72 242.7 22.6 5.3e-72 242.0 22.6 1.4 1 0 0 1 1 1 1 Formate/nitrite transporter MNHE PF01899.16 BAD86269.1 - 6.2e-44 149.3 0.1 7.1e-44 149.1 0.1 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit 12TM_1 PF09847.9 BAD86269.1 - 0.0041 16.3 1.5 0.0043 16.2 1.5 1.0 1 0 0 1 1 1 1 Membrane protein of 12 TMs MrpF_PhaF PF04066.13 BAD86270.1 - 1.4e-21 76.6 5.6 1.4e-21 76.6 5.6 2.0 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) DUF2108 PF09881.9 BAD86270.1 - 5.9 6.9 12.1 0.38 10.8 6.2 1.9 2 1 0 2 2 2 0 Predicted membrane protein (DUF2108) PhaG_MnhG_YufB PF03334.14 BAD86271.1 - 4.9e-23 81.2 6.9 6e-23 80.9 6.9 1.1 1 0 0 1 1 1 1 Na+/H+ antiporter subunit Claudin_3 PF06653.11 BAD86271.1 - 0.15 12.0 0.1 0.15 12.0 0.1 1.7 2 0 0 2 2 2 0 Tight junction protein, Claudin-like TssN PF17555.2 BAD86271.1 - 0.43 9.9 2.8 0.52 9.6 2.8 1.0 1 0 0 1 1 1 0 Type VI secretion system, TssN Rhomboid PF01694.22 BAD86271.1 - 0.74 9.8 6.7 2 8.4 6.7 1.6 1 1 0 1 1 1 0 Rhomboid family DUF4040 PF13244.6 BAD86272.1 - 9.6e-17 60.9 8.0 9.6e-17 60.9 8.0 1.4 1 1 1 2 2 2 1 Domain of unknown function (DUF4040) TspO_MBR PF03073.15 BAD86272.1 - 0.017 15.2 3.2 0.021 14.9 3.2 1.0 1 0 0 1 1 1 0 TspO/MBR family Peptidase_U4 PF03419.13 BAD86272.1 - 2.7 7.2 5.4 4 6.7 5.4 1.3 1 1 0 1 1 1 0 Sporulation factor SpoIIGA DUF2106 PF09879.9 BAD86273.1 - 0.044 13.3 0.1 0.055 13.0 0.1 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2106) MnhB PF04039.13 BAD86274.1 - 3.1e-26 92.1 14.1 3.7e-26 91.9 14.1 1.0 1 0 0 1 1 1 1 Domain related to MnhB subunit of Na+/H+ antiporter DUF2157 PF09925.9 BAD86274.1 - 9 6.1 12.6 0.3 10.9 2.3 2.6 1 1 1 2 2 2 0 Predicted membrane protein (DUF2157) Oxidored_q2 PF00420.24 BAD86275.1 - 1.8e-25 88.6 4.5 2.2e-25 88.3 4.5 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF2108 PF09881.9 BAD86275.1 - 0.0071 16.3 2.5 0.0071 16.3 2.5 1.7 2 0 0 2 2 2 1 Predicted membrane protein (DUF2108) SLATT_6 PF18169.1 BAD86275.1 - 0.089 12.4 2.0 0.63 9.6 1.0 2.0 2 0 0 2 2 2 0 SMODS and SLOG-associating 2TM effector domain 6 DUF4418 PF14387.6 BAD86275.1 - 0.39 10.9 5.5 0.27 11.5 1.6 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4418) SPW PF03779.14 BAD86275.1 - 1.3 8.7 6.3 0.98 9.0 1.6 2.4 2 0 0 2 2 2 0 SPW repeat Proton_antipo_M PF00361.20 BAD86276.1 - 6.3e-61 206.1 25.9 6.3e-61 206.1 25.9 2.0 3 0 0 3 3 3 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 BAD86276.1 - 2.4e-12 46.7 0.6 2.4e-12 46.7 0.6 2.7 3 0 0 3 3 3 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus PspB PF06667.12 BAD86277.1 - 0.12 12.5 1.3 0.47 10.5 0.0 2.0 2 0 0 2 2 2 0 Phage shock protein B LapA_dom PF06305.11 BAD86277.1 - 0.51 10.2 7.5 4.3 7.2 1.1 2.2 2 0 0 2 2 2 0 Lipopolysaccharide assembly protein A domain Oxidored_q6 PF01058.22 BAD86278.1 - 4e-28 97.8 0.1 5.3e-28 97.5 0.1 1.1 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Complex1_30kDa PF00329.19 BAD86279.1 - 1.7e-18 67.4 0.0 2.5e-18 66.8 0.0 1.2 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit DUF4349 PF14257.6 BAD86279.1 - 0.11 11.9 0.0 0.15 11.5 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4349) Complex1_49kDa PF00346.19 BAD86280.1 - 5.3e-55 186.4 0.0 5e-54 183.2 0.0 2.0 1 1 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.19 BAD86280.1 - 1.9e-19 70.0 3.7 2.6e-13 49.7 0.4 3.9 4 0 0 4 4 4 4 Nickel-dependent hydrogenase NADHdh PF00146.21 BAD86281.1 - 1.8e-59 201.5 19.7 2.2e-59 201.2 19.7 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Fer4_7 PF12838.7 BAD86282.1 - 1.5e-15 57.5 37.3 1.2e-09 38.6 13.9 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.27 BAD86282.1 - 1.9e-15 55.9 14.2 1.6e-08 34.0 1.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 BAD86282.1 - 1.7e-11 44.1 8.3 2.9e-11 43.4 8.3 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 BAD86282.1 - 2.4e-11 43.6 15.9 2e-07 31.0 11.1 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 BAD86282.1 - 6.3e-11 41.9 15.7 9.2e-07 28.7 4.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 BAD86282.1 - 9e-11 42.6 9.3 5.7e-06 27.2 3.1 2.6 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 BAD86282.1 - 2.1e-10 40.1 13.6 2e-06 27.5 3.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 BAD86282.1 - 6.2e-10 39.4 1.8 0.00094 19.6 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 BAD86282.1 - 8.4e-08 32.1 15.1 0.0015 18.9 4.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 BAD86282.1 - 1.8e-07 31.6 6.7 0.0011 19.5 0.1 2.4 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_21 PF14697.6 BAD86282.1 - 5e-07 29.7 14.0 0.00026 21.1 3.6 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 BAD86282.1 - 7.9e-05 22.8 11.8 7.9e-05 22.8 11.8 2.5 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_3 PF12798.7 BAD86282.1 - 0.00014 22.6 22.4 0.0049 17.7 6.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 BAD86282.1 - 0.0016 19.0 13.7 0.005 17.4 0.7 2.9 2 1 1 3 3 3 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 BAD86282.1 - 0.002 18.9 10.9 0.23 12.3 1.3 2.4 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 BAD86282.1 - 0.02 15.6 11.7 0.95 10.3 1.2 2.6 2 1 0 2 2 2 0 4Fe-4S single cluster domain T4BSS_DotH_IcmK PF12293.8 BAD86282.1 - 0.098 11.9 1.2 0.14 11.4 1.2 1.2 1 0 0 1 1 1 0 Putative outer membrane core complex of type IVb secretion ETF_QO PF05187.13 BAD86282.1 - 1.3 9.2 5.7 15 5.8 5.2 2.6 1 1 2 3 3 3 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_19 PF06902.11 BAD86282.1 - 2.9 8.1 9.6 6.8 6.9 7.2 2.6 2 1 0 2 2 2 0 Divergent 4Fe-4S mono-cluster Rubrerythrin PF02915.17 BAD86283.1 - 2.8e-15 56.9 3.3 3.5e-15 56.6 3.3 1.1 1 0 0 1 1 1 1 Rubrerythrin Ferritin_2 PF13668.6 BAD86283.1 - 0.00038 20.6 0.0 0.0005 20.3 0.0 1.2 1 0 0 1 1 1 1 Ferritin-like domain Ferritin PF00210.24 BAD86283.1 - 0.018 15.0 0.3 0.026 14.4 0.3 1.3 1 0 0 1 1 1 0 Ferritin-like domain DUF1657 PF07870.11 BAD86283.1 - 0.024 14.5 0.0 0.072 13.0 0.0 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF1657) DUF2383 PF09537.10 BAD86283.1 - 0.067 13.5 0.0 2.8 8.3 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF2383) MiaE_2 PF13794.6 BAD86283.1 - 0.1 12.3 0.2 0.57 9.9 0.1 1.9 1 1 1 2 2 2 0 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)-like Rubrerythrin PF02915.17 BAD86284.1 - 2e-18 67.1 3.7 2.4e-18 66.9 3.7 1.0 1 0 0 1 1 1 1 Rubrerythrin Ferritin_2 PF13668.6 BAD86284.1 - 4.2e-06 27.0 0.0 5e-06 26.7 0.0 1.1 1 0 0 1 1 1 1 Ferritin-like domain Ferritin PF00210.24 BAD86284.1 - 6.9e-05 22.8 1.2 0.00012 22.0 1.2 1.4 1 1 0 1 1 1 1 Ferritin-like domain DUF2383 PF09537.10 BAD86284.1 - 0.014 15.7 0.5 0.066 13.6 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF2383) Coat_F PF07875.12 BAD86284.1 - 0.022 15.0 0.1 0.15 12.3 0.1 2.1 2 0 0 2 2 2 0 Coat F domain MiaE PF06175.11 BAD86284.1 - 0.07 12.7 0.3 0.68 9.5 0.1 2.0 1 1 0 2 2 2 0 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) DUF4162 PF13732.6 BAD86284.1 - 0.12 13.1 0.1 0.25 12.1 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4162) Phage_TAC_8 PF10666.9 BAD86284.1 - 0.26 11.6 4.2 0.27 11.5 2.4 1.8 1 1 1 2 2 2 0 Phage tail assembly chaperone protein Gp14 ()A118 DUF2795 PF11387.8 BAD86284.1 - 0.29 11.4 1.3 1.1 9.6 0.0 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF2795) Rubrerythrin PF02915.17 BAD86285.1 - 7.2e-17 62.1 13.5 1.9e-16 60.7 13.2 1.7 1 1 0 1 1 1 1 Rubrerythrin Ferritin_2 PF13668.6 BAD86285.1 - 6.6e-08 32.8 1.4 8.6e-08 32.5 1.4 1.1 1 0 0 1 1 1 1 Ferritin-like domain DUF2383 PF09537.10 BAD86285.1 - 0.00041 20.7 5.7 0.0021 18.4 1.2 2.4 2 1 0 2 2 2 1 Domain of unknown function (DUF2383) Ferritin PF00210.24 BAD86285.1 - 0.014 15.3 8.4 0.15 12.0 7.0 2.3 1 1 1 2 2 2 0 Ferritin-like domain THUMP PF02926.17 BAD86286.1 - 8.6e-25 87.5 0.2 1e-24 87.3 0.2 1.1 1 0 0 1 1 1 1 THUMP domain NACHT PF05729.12 BAD86287.1 - 1.9e-05 24.6 0.1 0.023 14.6 0.0 2.9 3 0 0 3 3 3 2 NACHT domain AAA_22 PF13401.6 BAD86287.1 - 4.3e-05 23.8 0.0 0.0001 22.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 BAD86287.1 - 0.0001 22.3 0.2 0.00029 20.8 0.2 1.8 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea TrmB PF01978.19 BAD86287.1 - 0.00035 20.4 0.0 0.11 12.4 0.0 2.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB TniB PF05621.11 BAD86287.1 - 0.0013 18.2 0.2 0.0035 16.8 0.2 1.7 1 1 0 1 1 1 1 Bacterial TniB protein AAA PF00004.29 BAD86287.1 - 0.0027 18.1 0.1 0.018 15.5 0.0 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.6 BAD86287.1 - 0.0033 17.4 0.7 0.21 11.6 0.7 2.7 1 1 0 1 1 1 1 AAA domain NB-ARC PF00931.22 BAD86287.1 - 0.0057 15.9 0.0 0.34 10.1 0.0 2.3 2 0 0 2 2 2 1 NB-ARC domain AAA_16 PF13191.6 BAD86287.1 - 0.006 17.0 0.0 0.011 16.1 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_7 PF12775.7 BAD86287.1 - 0.026 14.1 0.0 0.041 13.4 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_35 PF14516.6 BAD86287.1 - 0.035 13.0 0.0 0.056 12.3 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain AAA_assoc_2 PF16193.5 BAD86287.1 - 0.097 13.0 0.0 0.21 11.9 0.0 1.5 1 0 0 1 1 1 0 AAA C-terminal domain Bac_DnaA PF00308.18 BAD86287.1 - 0.11 12.3 0.1 2.4 7.9 0.0 2.2 2 0 0 2 2 2 0 Bacterial dnaA protein ABC_tran PF00005.27 BAD86287.1 - 0.12 12.9 0.0 0.2 12.1 0.0 1.4 1 0 0 1 1 1 0 ABC transporter AAA_5 PF07728.14 BAD86287.1 - 0.13 12.3 0.0 7.8 6.5 0.0 2.4 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) TrwB_AAD_bind PF10412.9 BAD86287.1 - 0.17 10.8 0.1 0.27 10.1 0.1 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_30 PF13604.6 BAD86287.1 - 0.18 11.5 0.0 0.31 10.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain TsaE PF02367.17 BAD86287.1 - 0.18 11.8 0.0 0.4 10.7 0.0 1.6 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Acetyltransf_8 PF13523.6 BAD86287.1 - 0.18 11.5 0.0 0.32 10.7 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain YdjM PF04307.14 BAD86288.1 - 7.8e-16 57.9 0.1 1.2e-15 57.2 0.1 1.5 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase Zn_dep_PLPC PF00882.18 BAD86288.1 - 0.088 12.8 0.5 10 6.1 0.0 2.1 2 0 0 2 2 2 0 Zinc dependent phospholipase C NiFe_hyd_3_EhaA PF17367.2 BAD86288.1 - 0.11 12.6 6.4 5.5 7.2 0.3 3.2 2 1 1 3 3 3 0 NiFe-hydrogenase-type-3 Eha complex subunit A Phage_holin_4_2 PF04020.13 BAD86288.1 - 2.4 8.9 11.8 0.24 12.1 5.6 2.2 2 0 0 2 2 2 0 Mycobacterial 4 TMS phage holin, superfamily IV DUF872 PF05915.12 BAD86288.1 - 3 8.0 5.4 0.26 11.5 0.5 1.8 2 0 0 2 2 2 0 Eukaryotic protein of unknown function (DUF872) Pyr_redox_2 PF07992.14 BAD86289.1 - 6.8e-62 209.3 2.1 7.9e-62 209.1 2.1 1.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 BAD86289.1 - 3.4e-29 102.1 2.3 7.4e-23 81.3 0.1 2.1 1 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 BAD86289.1 - 1.5e-21 76.8 8.1 2.6e-17 63.2 0.8 4.0 3 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 BAD86289.1 - 1.3e-14 54.1 0.9 1.9e-05 23.9 0.1 4.1 4 0 0 4 4 4 4 Glucose inhibited division protein A FAD_binding_2 PF00890.24 BAD86289.1 - 2.7e-10 39.9 4.0 4.6e-06 26.0 0.2 4.0 3 1 0 4 4 4 2 FAD binding domain FAD_binding_3 PF01494.19 BAD86289.1 - 2.8e-10 40.0 0.5 3.5e-05 23.2 0.1 2.4 2 0 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.7 BAD86289.1 - 1.2e-09 38.1 2.8 8.3e-08 32.0 0.0 3.0 2 1 1 3 3 3 1 FAD dependent oxidoreductase DAO PF01266.24 BAD86289.1 - 1.4e-09 38.0 6.9 0.0048 16.5 0.5 3.8 3 1 1 4 4 4 3 FAD dependent oxidoreductase HI0933_like PF03486.14 BAD86289.1 - 2.6e-09 36.3 0.5 0.00019 20.3 0.1 3.6 4 0 0 4 4 4 3 HI0933-like protein NAD_binding_7 PF13241.6 BAD86289.1 - 1.2e-07 32.2 1.0 0.00069 20.0 0.2 3.2 3 0 0 3 3 3 2 Putative NAD(P)-binding NAD_binding_8 PF13450.6 BAD86289.1 - 8.3e-07 29.2 0.2 0.00015 21.9 0.0 2.5 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 BAD86289.1 - 4.1e-06 26.2 0.1 0.00032 20.0 0.0 2.3 2 0 0 2 2 2 1 Thi4 family K_oxygenase PF13434.6 BAD86289.1 - 3e-05 23.3 0.1 0.0017 17.5 0.0 3.0 2 1 1 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) PALP PF00291.25 BAD86289.1 - 0.00039 19.9 0.1 0.021 14.3 0.0 2.4 3 0 0 3 3 3 1 Pyridoxal-phosphate dependent enzyme AlaDh_PNT_C PF01262.21 BAD86289.1 - 0.00039 19.8 3.3 0.14 11.4 0.0 2.6 3 0 0 3 3 3 2 Alanine dehydrogenase/PNT, C-terminal domain Shikimate_DH PF01488.20 BAD86289.1 - 0.00091 19.3 0.6 0.068 13.2 0.1 3.0 3 0 0 3 3 3 1 Shikimate / quinate 5-dehydrogenase Lycopene_cycl PF05834.12 BAD86289.1 - 0.0016 17.6 0.3 0.12 11.4 0.1 2.9 3 0 0 3 3 3 1 Lycopene cyclase protein IlvN PF07991.12 BAD86289.1 - 0.004 16.7 0.1 0.0091 15.6 0.1 1.7 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain Trp_halogenase PF04820.14 BAD86289.1 - 0.0042 16.0 3.4 0.19 10.5 0.2 2.6 2 1 1 3 3 3 2 Tryptophan halogenase XdhC_C PF13478.6 BAD86289.1 - 0.0081 16.7 0.0 0.28 11.7 0.0 2.4 2 0 0 2 2 2 1 XdhC Rossmann domain 2-Hacid_dh_C PF02826.19 BAD86289.1 - 0.023 14.1 1.3 1.3 8.4 0.0 3.1 3 0 0 3 3 3 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Amino_oxidase PF01593.24 BAD86289.1 - 0.057 12.7 0.0 0.18 11.0 0.0 1.8 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase NAD_binding_9 PF13454.6 BAD86289.1 - 0.091 12.7 0.4 5.9 6.9 0.0 2.7 2 0 0 2 2 2 0 FAD-NAD(P)-binding Aminotran_3 PF00202.21 BAD86290.1 - 1.5e-117 392.8 0.0 1.7e-117 392.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III TPR_8 PF13181.6 BAD86290.1 - 0.31 11.3 0.9 33 5.0 0.0 2.6 2 0 0 2 2 2 0 Tetratricopeptide repeat ECF-ribofla_trS PF07155.12 BAD86291.1 - 4e-44 150.6 18.1 4e-44 150.6 18.1 1.3 2 0 0 2 2 2 1 ECF-type riboflavin transporter, S component ECF_trnsprt PF12822.7 BAD86291.1 - 5.1e-06 26.7 20.7 5.1e-06 26.7 20.7 2.2 1 1 1 2 2 2 2 ECF transporter, substrate-specific component 7TM-7TMR_HD PF07698.11 BAD86291.1 - 0.0015 18.3 7.7 0.002 17.9 7.7 1.1 1 0 0 1 1 1 1 7TM receptor with intracellular HD hydrolase Glucos_trans_II PF14264.6 BAD86291.1 - 0.016 14.6 1.9 0.016 14.6 1.9 2.0 2 0 0 2 2 2 0 Glucosyl transferase GtrII ABC2_membrane_5 PF13346.6 BAD86291.1 - 8.1 5.9 9.7 0.8 9.2 4.9 1.8 2 0 0 2 2 2 0 ABC-2 family transporter protein ThrE PF06738.12 BAD86291.1 - 8.7 5.6 16.1 0.15 11.4 5.0 2.2 1 1 1 2 2 2 0 Putative threonine/serine exporter DUF1884 PF08967.10 BAD86292.1 - 2.7e-34 117.3 0.1 4.3e-34 116.6 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1884) DeoC PF01791.9 BAD86293.1 - 5.1e-24 85.2 3.8 6.2e-24 84.9 3.8 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase DHO_dh PF01180.21 BAD86293.1 - 0.0002 20.7 2.6 0.00029 20.2 1.5 1.9 1 1 1 2 2 2 1 Dihydroorotate dehydrogenase NanE PF04131.14 BAD86293.1 - 0.00033 19.9 1.0 0.00053 19.2 1.0 1.4 1 0 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase IMPDH PF00478.25 BAD86293.1 - 0.0066 15.5 1.4 0.0074 15.3 1.4 1.1 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain HMGL-like PF00682.19 BAD86293.1 - 0.0069 16.0 1.6 0.016 14.8 1.1 2.0 2 1 0 2 2 2 1 HMGL-like His_biosynth PF00977.21 BAD86293.1 - 0.012 15.1 1.3 0.063 12.7 0.1 2.3 1 1 0 2 2 2 0 Histidine biosynthesis protein AP_endonuc_2 PF01261.24 BAD86293.1 - 0.012 15.1 0.2 4.5 6.7 0.1 2.6 1 1 1 2 2 2 0 Xylose isomerase-like TIM barrel DUF2802 PF10975.8 BAD86293.1 - 0.035 14.2 0.2 5.4 7.2 0.1 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2802) Enolase_C PF00113.22 BAD86295.1 - 1.3e-130 435.0 0.1 1.7e-130 434.6 0.1 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.16 BAD86295.1 - 1.3e-60 203.3 0.0 2e-60 202.7 0.0 1.3 1 0 0 1 1 1 1 Enolase, N-terminal domain MR_MLE_C PF13378.6 BAD86295.1 - 4.1e-08 33.1 0.0 6.3e-08 32.4 0.0 1.3 1 0 0 1 1 1 1 Enolase C-terminal domain-like MAAL_C PF07476.11 BAD86295.1 - 0.00015 21.0 0.1 0.00044 19.5 0.0 1.7 2 0 0 2 2 2 1 Methylaspartate ammonia-lyase C-terminus PadR PF03551.14 BAD86296.1 - 9.3e-18 64.0 0.5 9.3e-18 64.0 0.5 1.7 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family HTH_34 PF13601.6 BAD86296.1 - 9.1e-05 22.6 0.2 0.00081 19.5 0.0 2.3 1 1 2 3 3 3 1 Winged helix DNA-binding domain RTP PF02334.16 BAD86296.1 - 0.00073 20.2 1.5 0.0018 18.9 0.3 2.0 1 1 1 2 2 2 1 Replication terminator protein HTH_45 PF14947.6 BAD86296.1 - 0.0031 17.5 1.4 0.0096 15.9 0.0 2.4 3 0 0 3 3 3 1 Winged helix-turn-helix AphA_like PF14557.6 BAD86296.1 - 0.018 14.7 0.0 0.033 13.9 0.0 1.4 1 1 0 1 1 1 0 Putative AphA-like transcriptional regulator HTH_27 PF13463.6 BAD86296.1 - 0.038 14.5 0.7 0.11 13.0 0.1 2.2 2 1 0 2 2 2 0 Winged helix DNA-binding domain DUF3095 PF11294.8 BAD86296.1 - 0.18 10.8 0.1 0.21 10.6 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3095) NUT PF12881.7 BAD86296.1 - 0.19 10.2 0.1 0.24 9.8 0.1 1.1 1 0 0 1 1 1 0 NUT protein MMPL PF03176.15 BAD86297.1 - 4.1e-64 216.6 11.8 1.7e-36 125.8 1.2 3.3 3 0 0 3 3 3 2 MMPL family ACR_tran PF00873.19 BAD86297.1 - 3.3e-07 28.4 1.5 3.3e-07 28.4 1.5 2.3 2 0 0 2 2 2 1 AcrB/AcrD/AcrF family DUF758 PF05527.11 BAD86297.1 - 0.051 13.6 0.0 1.3 9.0 0.0 2.7 2 1 1 3 3 3 0 Domain of unknown function (DUF758) 7TMR-HDED PF07697.11 BAD86297.1 - 0.14 12.3 4.5 2 8.5 1.7 3.4 3 1 0 3 3 3 0 7TM-HD extracellular Radical_SAM PF04055.21 BAD86298.1 - 3.2e-13 50.4 0.5 4.2e-08 33.7 0.2 2.4 2 1 1 3 3 3 2 Radical SAM superfamily DUF1107 PF06526.12 BAD86298.1 - 0.11 12.5 0.0 0.22 11.4 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1107) HTH_24 PF13412.6 BAD86299.1 - 4.5e-18 64.5 1.0 3.4e-15 55.3 0.7 2.2 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.21 BAD86299.1 - 5.6e-15 55.1 0.0 8.8e-15 54.4 0.0 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_AsnC-type PF13404.6 BAD86299.1 - 2.3e-14 52.9 0.2 3.7e-12 45.9 0.1 2.3 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain TrmB PF01978.19 BAD86299.1 - 2.3e-06 27.4 0.2 5.4e-06 26.2 0.1 1.6 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 BAD86299.1 - 3.6e-06 26.8 0.0 4.2e-05 23.4 0.0 2.0 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.10 BAD86299.1 - 1.7e-05 24.5 0.0 0.00013 21.7 0.0 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR PF01047.22 BAD86299.1 - 0.00044 20.1 0.0 0.00084 19.2 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_8 PF02954.19 BAD86299.1 - 0.00066 19.4 0.1 0.0011 18.7 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family HTH_5 PF01022.20 BAD86299.1 - 0.00097 19.0 0.0 0.0015 18.3 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.6 BAD86299.1 - 0.0011 19.4 0.0 0.0021 18.5 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_23 PF13384.6 BAD86299.1 - 0.0015 18.2 0.1 0.094 12.5 0.0 2.3 2 0 0 2 2 2 1 Homeodomain-like domain HTH_20 PF12840.7 BAD86299.1 - 0.0026 17.8 0.0 0.006 16.6 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_30 PF13556.6 BAD86299.1 - 0.0032 17.2 0.1 0.006 16.4 0.1 1.3 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain Sigma70_r4 PF04545.16 BAD86299.1 - 0.0042 16.6 0.1 4 7.0 0.0 2.7 2 1 0 2 2 2 2 Sigma-70, region 4 HTH_11 PF08279.12 BAD86299.1 - 0.0062 16.5 0.1 0.012 15.5 0.1 1.5 1 0 0 1 1 1 1 HTH domain RuvB_C PF05491.13 BAD86299.1 - 0.018 14.9 0.1 0.034 14.0 0.1 1.4 1 0 0 1 1 1 0 RuvB C-terminal winged helix domain HTH_10 PF04967.12 BAD86299.1 - 0.025 14.4 0.1 0.064 13.1 0.0 1.6 2 0 0 2 2 2 0 HTH DNA binding domain GntR PF00392.21 BAD86299.1 - 0.027 14.1 0.0 0.29 10.8 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family B-block_TFIIIC PF04182.12 BAD86299.1 - 0.027 14.6 0.0 0.071 13.3 0.0 1.7 1 1 1 2 2 2 0 B-block binding subunit of TFIIIC HTH_28 PF13518.6 BAD86299.1 - 0.043 13.9 0.0 0.32 11.1 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_43 PF09904.9 BAD86299.1 - 0.05 13.6 0.0 0.11 12.4 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn helix HTH_3 PF01381.22 BAD86299.1 - 0.055 13.5 0.0 25 5.0 0.0 2.9 3 0 0 3 3 3 0 Helix-turn-helix HTH_micro PF17007.5 BAD86299.1 - 0.057 12.2 0.2 0.22 10.3 0.1 1.7 1 1 0 2 2 2 0 HTH-like HTH_Crp_2 PF13545.6 BAD86299.1 - 0.068 13.2 0.0 0.34 10.9 0.0 2.1 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain Sigma70_r4_2 PF08281.12 BAD86299.1 - 0.076 12.7 0.2 2.5 7.8 0.1 2.7 2 1 1 3 3 3 0 Sigma-70, region 4 DUF2250 PF10007.9 BAD86299.1 - 0.095 12.8 0.1 0.17 12.0 0.1 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Mga PF05043.13 BAD86299.1 - 0.11 13.2 0.0 0.17 12.5 0.0 1.3 1 0 0 1 1 1 0 Mga helix-turn-helix domain Ham1p_like PF01725.16 BAD86300.1 - 1.3e-54 185.0 0.0 1.4e-54 184.9 0.0 1.0 1 0 0 1 1 1 1 Ham1 family Adenosine_kin PF04008.14 BAD86301.1 - 1.5e-62 209.9 0.5 1.7e-62 209.8 0.5 1.0 1 0 0 1 1 1 1 Adenosine specific kinase HTH_24 PF13412.6 BAD86302.1 - 1.4e-11 43.8 0.1 4.4e-11 42.2 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 BAD86302.1 - 2e-06 27.5 0.0 1.1e-05 25.2 0.0 2.1 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_23 PF13384.6 BAD86302.1 - 1.8e-05 24.4 0.0 0.00011 21.9 0.0 2.1 2 0 0 2 2 2 1 Homeodomain-like domain HTH_IclR PF09339.10 BAD86302.1 - 0.00022 21.0 0.0 0.00053 19.7 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.22 BAD86302.1 - 0.00035 20.5 0.0 0.00079 19.3 0.0 1.6 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.19 BAD86302.1 - 0.00058 20.0 0.0 0.0058 16.8 0.0 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_11 PF08279.12 BAD86302.1 - 0.0006 19.7 0.0 0.0036 17.2 0.0 2.2 2 0 0 2 2 2 1 HTH domain HTH_28 PF13518.6 BAD86302.1 - 0.00088 19.3 0.0 0.014 15.5 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 BAD86302.1 - 0.001 18.9 0.0 0.0021 17.9 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 BAD86302.1 - 0.0017 18.2 0.0 0.0032 17.3 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family GntR PF00392.21 BAD86302.1 - 0.0026 17.4 0.0 0.0053 16.4 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family Sigma70_r4_2 PF08281.12 BAD86302.1 - 0.0065 16.1 0.0 0.014 15.0 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_29 PF13551.6 BAD86302.1 - 0.0094 16.0 0.0 0.023 14.7 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn helix TrmB PF01978.19 BAD86302.1 - 0.014 15.2 0.0 0.014 15.2 0.0 2.6 3 0 0 3 3 3 0 Sugar-specific transcriptional regulator TrmB Penicillinase_R PF03965.16 BAD86302.1 - 0.019 15.3 0.0 0.036 14.4 0.0 1.4 1 0 0 1 1 1 0 Penicillinase repressor HTH_Crp_2 PF13545.6 BAD86302.1 - 0.02 14.8 0.0 0.052 13.5 0.0 1.7 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_17 PF12728.7 BAD86302.1 - 0.022 14.9 0.0 0.066 13.4 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_DeoR PF08220.12 BAD86302.1 - 0.026 14.3 0.0 0.053 13.3 0.0 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_38 PF13936.6 BAD86302.1 - 0.027 14.3 0.2 0.41 10.4 0.0 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_36 PF13730.6 BAD86302.1 - 0.028 14.4 0.0 0.059 13.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_30 PF13556.6 BAD86302.1 - 0.056 13.2 0.0 0.16 11.8 0.0 1.7 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_20 PF12840.7 BAD86302.1 - 0.11 12.6 0.0 0.2 11.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_10 PF04967.12 BAD86302.1 - 0.13 12.0 0.0 0.4 10.5 0.0 1.8 1 0 0 1 1 1 0 HTH DNA binding domain YonK PF09642.10 BAD86302.1 - 0.14 12.3 0.6 4.3 7.5 0.2 2.7 2 0 0 2 2 2 0 YonK protein Rrf2 PF02082.20 BAD86302.1 - 0.15 12.4 0.0 0.43 11.0 0.0 1.8 1 0 0 1 1 1 0 Transcriptional regulator HTH_Mga PF08280.11 BAD86302.1 - 0.16 12.0 0.0 0.4 10.8 0.0 1.6 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_Tnp_ISL3 PF13542.6 BAD86302.1 - 0.22 11.0 0.0 15 5.1 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 SPASM PF13186.6 BAD86303.1 - 1.9e-08 34.7 0.0 4.6e-08 33.5 0.0 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain MoaE PF02391.17 BAD86304.1 - 6.4e-39 132.7 0.0 7.3e-39 132.5 0.0 1.0 1 0 0 1 1 1 1 MoaE protein UPF0556 PF10572.9 BAD86304.1 - 0.11 12.0 0.0 0.13 11.7 0.0 1.2 1 0 0 1 1 1 0 Uncharacterised protein family UPF0556 ThiF PF00899.21 BAD86306.1 - 3.4e-59 200.2 0.0 3.9e-59 199.9 0.0 1.0 1 0 0 1 1 1 1 ThiF family Sacchrp_dh_NADP PF03435.18 BAD86306.1 - 5.3e-05 23.5 0.0 0.00013 22.2 0.0 1.7 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain ApbA PF02558.16 BAD86306.1 - 0.00013 21.6 0.0 0.00022 20.9 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.18 BAD86306.1 - 0.00025 21.0 0.0 0.00059 19.8 0.0 1.7 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 BAD86306.1 - 0.00031 20.2 0.1 0.0093 15.3 0.0 2.2 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 BAD86306.1 - 0.002 17.7 0.0 0.0039 16.8 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_7 PF13241.6 BAD86306.1 - 0.004 17.6 0.0 0.0072 16.7 0.0 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding DAO PF01266.24 BAD86306.1 - 0.0078 15.8 1.4 0.011 15.4 1.1 1.4 1 1 0 1 1 1 1 FAD dependent oxidoreductase Shikimate_DH PF01488.20 BAD86306.1 - 0.0097 16.0 0.0 0.12 12.5 0.0 2.3 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase THF_DHG_CYH_C PF02882.19 BAD86306.1 - 0.017 14.4 0.2 0.087 12.1 0.0 2.1 3 0 0 3 3 3 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Ldh_1_N PF00056.23 BAD86306.1 - 0.044 13.9 4.7 0.11 12.6 0.3 2.8 2 1 0 3 3 3 0 lactate/malate dehydrogenase, NAD binding domain Pyr_redox_2 PF07992.14 BAD86306.1 - 0.12 11.6 0.2 0.21 10.8 0.0 1.5 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase ThiS PF02597.20 BAD86307.1 - 1e-23 83.7 0.1 1.2e-23 83.6 0.1 1.0 1 0 0 1 1 1 1 ThiS family Ub-Mut7C PF14451.6 BAD86307.1 - 0.0025 17.6 0.1 0.033 14.0 0.0 2.1 2 0 0 2 2 2 1 Mut7-C ubiquitin Ub-RnfH PF03658.14 BAD86307.1 - 0.017 15.5 0.0 0.024 15.0 0.0 1.3 1 1 0 1 1 1 0 RnfH family Ubiquitin Lambda_tail_I PF06805.12 BAD86307.1 - 0.02 15.2 0.0 0.025 14.9 0.0 1.3 1 1 0 1 1 1 0 Bacteriophage lambda tail assembly protein I SLBB PF10531.9 BAD86307.1 - 0.026 14.4 0.1 1.4 8.8 0.0 2.3 2 0 0 2 2 2 0 SLBB domain TGS PF02824.21 BAD86307.1 - 0.04 14.0 0.1 0.6 10.2 0.0 2.1 2 0 0 2 2 2 0 TGS domain CarS-like PF01864.17 BAD86308.1 - 3.1e-60 203.1 2.3 3.5e-60 202.9 2.3 1.0 1 0 0 1 1 1 1 CDP-archaeol synthase CTP_transf_1 PF01148.20 BAD86308.1 - 1.3e-10 41.5 1.2 1.3e-10 41.5 1.2 1.9 2 0 0 2 2 2 1 Cytidylyltransferase family CytB6-F_Fe-S PF08802.10 BAD86308.1 - 0.011 15.7 0.1 0.044 13.8 0.0 2.1 2 0 0 2 2 2 0 Cytochrome B6-F complex Fe-S subunit Rick_17kDa_Anti PF05433.15 BAD86308.1 - 0.045 13.6 1.7 1.2 9.1 1.3 2.5 2 0 0 2 2 2 0 Glycine zipper 2TM domain CcmD PF04995.14 BAD86308.1 - 0.35 11.0 2.5 1.2 9.3 0.0 2.8 3 0 0 3 3 3 0 Heme exporter protein D (CcmD) PrgI PF12666.7 BAD86308.1 - 3.4 8.5 12.6 3.1 8.6 1.4 2.8 2 1 1 3 3 3 0 PrgI family protein LEA_2 PF03168.13 BAD86309.1 - 2.3e-14 53.7 0.3 1.1e-13 51.6 0.2 2.1 2 0 0 2 2 2 1 Late embryogenesis abundant protein DUF3201 PF11447.8 BAD86310.1 - 4.3e-89 295.7 8.1 5e-89 295.5 8.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3201) Methyltr_RsmB-F PF01189.17 BAD86311.1 - 1.1e-57 194.9 0.0 1.5e-57 194.5 0.0 1.1 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F PUA PF01472.20 BAD86311.1 - 1.1e-17 63.8 0.4 2.3e-17 62.7 0.4 1.5 1 0 0 1 1 1 1 PUA domain Methyltransf_31 PF13847.6 BAD86311.1 - 3e-11 43.3 0.0 4.3e-11 42.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltr_RsmF_N PF17125.5 BAD86311.1 - 6.5e-09 36.2 0.0 1.6e-07 31.7 0.0 2.3 2 0 0 2 2 2 1 N-terminal domain of 16S rRNA methyltransferase RsmF Methyltransf_25 PF13649.6 BAD86311.1 - 3.2e-06 27.8 0.0 7e-06 26.7 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 BAD86311.1 - 1e-05 25.0 0.0 1.7e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_4 PF02390.17 BAD86311.1 - 0.00027 20.5 0.1 0.0025 17.3 0.0 2.1 2 0 0 2 2 2 1 Putative methyltransferase PCMT PF01135.19 BAD86311.1 - 0.00081 19.2 0.0 0.0015 18.3 0.0 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) FtsJ PF01728.19 BAD86311.1 - 0.0011 19.1 0.0 0.0029 17.8 0.0 1.7 1 1 0 1 1 1 1 FtsJ-like methyltransferase HTH_12 PF08461.10 BAD86311.1 - 0.0078 16.1 0.3 0.024 14.6 0.3 1.8 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain MCD_N PF17408.2 BAD86311.1 - 0.026 14.6 0.4 0.15 12.2 0.1 2.1 2 0 0 2 2 2 0 Malonyl-CoA decarboxylase N-terminal domain Fibrillarin PF01269.17 BAD86311.1 - 0.034 13.3 0.0 0.066 12.3 0.0 1.4 1 0 0 1 1 1 0 Fibrillarin Methyltransf_15 PF09445.10 BAD86311.1 - 0.048 13.2 0.0 0.066 12.8 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_11 PF08241.12 BAD86311.1 - 0.067 13.8 0.0 0.18 12.4 0.0 1.8 1 0 0 1 1 1 0 Methyltransferase domain ADH_zinc_N PF00107.26 BAD86311.1 - 0.082 12.9 0.0 5.8 6.9 0.0 2.8 3 0 0 3 3 3 0 Zinc-binding dehydrogenase LPG_synthase_TM PF03706.13 BAD86312.1 - 5.2e-58 197.0 30.3 6.1e-58 196.7 30.3 1.0 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region ISK_Channel PF02060.15 BAD86312.1 - 0.25 11.1 2.7 0.19 11.5 0.7 1.8 2 0 0 2 2 2 0 Slow voltage-gated potassium channel NAD_kinase PF01513.21 BAD86313.1 - 5.4e-71 239.2 0.2 1e-70 238.3 0.2 1.4 1 1 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 BAD86313.1 - 0.0096 15.5 0.0 0.015 14.9 0.0 1.3 1 0 0 1 1 1 1 Diacylglycerol kinase catalytic domain DUF835 PF05763.12 BAD86314.1 - 6.8e-38 129.5 0.0 9.3e-38 129.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF835) Peptidase_M22 PF00814.25 BAD86315.1 - 2.1e-96 322.8 0.1 2.5e-96 322.6 0.1 1.0 1 0 0 1 1 1 1 Glycoprotease family Carbam_trans_N PF02543.15 BAD86315.1 - 0.0022 17.7 0.0 0.19 11.4 0.0 2.2 2 0 0 2 2 2 2 Carbamoyltransferase N-terminus Succ_CoA_lig PF13607.6 BAD86316.1 - 5.3e-58 194.7 1.0 7.8e-57 190.9 0.3 2.5 3 0 0 3 3 3 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 BAD86316.1 - 3.6e-19 69.4 0.4 5.6e-17 62.3 0.0 2.6 2 1 0 2 2 2 2 CoA binding domain CoA_binding PF02629.19 BAD86316.1 - 3.5e-06 27.6 1.1 3.5e-06 27.6 1.1 2.8 3 0 0 3 3 3 1 CoA binding domain Hydrolase_6 PF13344.6 BAD86316.1 - 0.014 15.5 0.0 0.044 13.9 0.0 1.8 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase CTP_transf_like PF01467.26 BAD86317.1 - 2.4e-17 63.5 0.0 2.8e-17 63.2 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 BAD86317.1 - 0.00041 20.3 0.0 0.00055 19.8 0.0 1.3 1 0 0 1 1 1 1 FAD synthetase TIM PF00121.18 BAD86318.1 - 7.2e-11 41.9 0.1 2.5e-10 40.2 0.0 1.7 1 1 1 2 2 2 1 Triosephosphate isomerase ThiG PF05690.14 BAD86318.1 - 4.4e-06 26.2 1.7 6.7e-06 25.6 0.2 1.8 1 1 0 2 2 2 1 Thiazole biosynthesis protein ThiG IGPS PF00218.21 BAD86318.1 - 0.00022 20.5 0.0 0.00037 19.7 0.0 1.5 1 1 0 1 1 1 1 Indole-3-glycerol phosphate synthase FMN_dh PF01070.18 BAD86318.1 - 0.00073 18.7 0.5 0.0012 17.9 0.1 1.5 2 0 0 2 2 2 1 FMN-dependent dehydrogenase NMO PF03060.15 BAD86318.1 - 0.0014 18.1 1.2 0.0024 17.3 1.2 1.4 1 0 0 1 1 1 1 Nitronate monooxygenase DHO_dh PF01180.21 BAD86318.1 - 0.053 12.7 0.1 0.082 12.1 0.1 1.3 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase His_biosynth PF00977.21 BAD86318.1 - 0.069 12.6 0.2 0.25 10.8 0.1 1.9 2 0 0 2 2 2 0 Histidine biosynthesis protein CobA_CobO_BtuR PF02572.15 BAD86319.1 - 4.9e-63 212.5 0.1 5.5e-63 212.3 0.1 1.0 1 0 0 1 1 1 1 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP RecA PF00154.21 BAD86319.1 - 0.037 13.5 0.2 0.3 10.5 0.2 2.0 1 1 0 1 1 1 0 recA bacterial DNA recombination protein IstB_IS21 PF01695.17 BAD86319.1 - 0.053 13.3 0.1 2.8 7.6 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein CbiA PF01656.23 BAD86319.1 - 0.19 11.8 0.0 0.27 11.3 0.0 1.3 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_25 PF13481.6 BAD86319.1 - 0.27 10.8 1.2 2.1 7.9 1.2 2.0 1 1 0 1 1 1 0 AAA domain UPF0147 PF03685.13 BAD86320.1 - 5.8e-33 112.8 2.7 6.3e-33 112.7 2.7 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) Aldolase_II PF00596.21 BAD86321.1 - 1.9e-49 168.1 0.0 2.2e-49 167.9 0.0 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain DUF4776 PF16003.5 BAD86322.1 - 0.028 13.4 0.3 0.033 13.2 0.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4776) zinc-ribbons_6 PF07191.12 BAD86322.1 - 0.11 12.5 0.1 0.17 11.9 0.1 1.2 1 0 0 1 1 1 0 zinc-ribbons FYVE PF01363.21 BAD86322.1 - 0.14 12.4 0.2 0.19 11.9 0.2 1.2 1 0 0 1 1 1 0 FYVE zinc finger AsnC_trans_reg PF01037.21 BAD86323.1 - 9.6e-16 57.5 0.0 1.8e-15 56.7 0.0 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 BAD86323.1 - 3.5e-15 55.3 0.1 5.7e-15 54.6 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 BAD86323.1 - 3.2e-14 52.4 0.2 5.7e-14 51.7 0.2 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 BAD86323.1 - 7.8e-09 35.4 0.1 1.3e-08 34.7 0.1 1.3 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.7 BAD86323.1 - 4.3e-07 29.9 0.0 1e-06 28.7 0.0 1.6 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_Mga PF08280.11 BAD86323.1 - 7e-07 29.2 0.0 1.3e-06 28.3 0.0 1.4 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain Sigma70_r4 PF04545.16 BAD86323.1 - 3.8e-05 23.1 0.0 7.2e-05 22.2 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_DeoR PF08220.12 BAD86323.1 - 9.6e-05 22.1 0.1 0.00015 21.4 0.1 1.3 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HxlR PF01638.17 BAD86323.1 - 0.0001 22.1 0.0 0.0002 21.2 0.0 1.5 1 0 0 1 1 1 1 HxlR-like helix-turn-helix TFIIE_alpha PF02002.17 BAD86323.1 - 0.00011 22.0 0.1 0.04 13.8 0.1 2.1 2 0 0 2 2 2 1 TFIIE alpha subunit MarR_2 PF12802.7 BAD86323.1 - 0.00014 21.7 0.0 0.00028 20.7 0.0 1.4 1 0 0 1 1 1 1 MarR family Sigma70_r4_2 PF08281.12 BAD86323.1 - 0.00019 21.0 0.2 0.0007 19.2 0.2 1.9 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_28 PF13518.6 BAD86323.1 - 0.0002 21.4 0.0 0.00038 20.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 BAD86323.1 - 0.00062 19.5 0.0 0.0012 18.6 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.20 BAD86323.1 - 0.001 18.9 0.0 0.0019 18.0 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_23 PF13384.6 BAD86323.1 - 0.0013 18.4 0.0 0.0021 17.8 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain MarR PF01047.22 BAD86323.1 - 0.0015 18.5 0.0 0.0036 17.2 0.0 1.6 2 0 0 2 2 1 1 MarR family HTH_Crp_2 PF13545.6 BAD86323.1 - 0.0015 18.5 0.0 0.0028 17.6 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Rrf2 PF02082.20 BAD86323.1 - 0.0016 18.7 0.1 0.0043 17.4 0.1 1.7 2 0 0 2 2 1 1 Transcriptional regulator RepL PF05732.11 BAD86323.1 - 0.0018 17.7 0.1 0.0039 16.6 0.0 1.5 1 1 0 1 1 1 1 Firmicute plasmid replication protein (RepL) HTH_27 PF13463.6 BAD86323.1 - 0.002 18.6 0.1 0.0062 17.0 0.1 1.8 2 0 0 2 2 1 1 Winged helix DNA-binding domain TrmB PF01978.19 BAD86323.1 - 0.0025 17.7 0.1 0.024 14.5 0.1 2.0 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB GerE PF00196.19 BAD86323.1 - 0.0043 16.6 0.0 0.0082 15.7 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family DUF4423 PF14394.6 BAD86323.1 - 0.0047 16.6 0.1 0.0083 15.8 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) AsnC_trans_reg2 PF17805.1 BAD86323.1 - 0.0062 16.7 0.0 0.026 14.7 0.0 1.9 2 0 0 2 2 2 1 AsnC-like ligand binding domain FaeA PF04703.12 BAD86323.1 - 0.012 16.0 0.1 0.022 15.1 0.1 1.4 1 0 0 1 1 1 0 FaeA-like protein HTH_12 PF08461.10 BAD86323.1 - 0.022 14.7 0.0 0.059 13.3 0.0 1.8 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_34 PF13601.6 BAD86323.1 - 0.026 14.7 0.0 0.051 13.7 0.0 1.5 1 1 0 1 1 1 0 Winged helix DNA-binding domain HTH_29 PF13551.6 BAD86323.1 - 0.03 14.3 0.0 0.051 13.6 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix HTH_Tnp_ISL3 PF13542.6 BAD86323.1 - 0.031 13.7 0.0 0.056 12.9 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 B-block_TFIIIC PF04182.12 BAD86323.1 - 0.033 14.3 0.0 0.51 10.5 0.0 2.1 1 1 1 2 2 2 0 B-block binding subunit of TFIIIC HTH_50 PF18024.1 BAD86323.1 - 0.035 13.7 0.0 0.35 10.5 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_36 PF13730.6 BAD86323.1 - 0.037 14.0 0.0 0.06 13.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Mga PF05043.13 BAD86323.1 - 0.046 14.3 0.0 0.11 13.1 0.0 1.6 2 0 0 2 2 1 0 Mga helix-turn-helix domain LexA_DNA_bind PF01726.16 BAD86323.1 - 0.055 13.2 0.0 0.1 12.4 0.0 1.5 1 0 0 1 1 1 0 LexA DNA binding domain DUF2774 PF11242.8 BAD86323.1 - 0.063 13.5 0.0 0.12 12.6 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2774) DUF2250 PF10007.9 BAD86323.1 - 0.075 13.2 0.1 0.26 11.4 0.0 1.8 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_10 PF04967.12 BAD86323.1 - 0.077 12.8 0.0 0.18 11.7 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain DUF2805 PF10985.8 BAD86323.1 - 0.096 13.1 0.1 0.21 12.0 0.0 1.6 2 0 0 2 2 1 0 Protein of unknown function (DUF2805) HTH_1 PF00126.27 BAD86323.1 - 0.12 12.3 0.0 0.21 11.6 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family tRNA_U5-meth_tr PF05958.11 BAD86324.1 - 9.8e-27 93.9 0.0 7.7e-18 64.6 0.0 2.1 1 1 1 2 2 2 2 tRNA (Uracil-5-)-methyltransferase MTS PF05175.14 BAD86324.1 - 5.6e-10 39.0 0.0 8.9e-10 38.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Met_10 PF02475.16 BAD86324.1 - 9e-09 35.4 0.1 1.5e-08 34.6 0.1 1.3 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_31 PF13847.6 BAD86324.1 - 5.9e-08 32.7 0.0 2.1e-07 30.9 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain PrmA PF06325.13 BAD86324.1 - 1.6e-06 27.7 0.2 2.4e-06 27.2 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.6 BAD86324.1 - 2.5e-06 28.1 0.0 7.5e-06 26.6 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 BAD86324.1 - 6.6e-06 25.9 0.0 1.2e-05 25.1 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_15 PF09445.10 BAD86324.1 - 6.6e-05 22.6 0.0 0.00015 21.4 0.0 1.6 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_23 PF13489.6 BAD86324.1 - 7e-05 22.7 0.0 0.00015 21.7 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.14 BAD86324.1 - 0.00097 18.6 0.0 0.0014 18.1 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_11 PF08241.12 BAD86324.1 - 0.012 16.3 0.0 0.038 14.6 0.0 1.9 1 0 0 1 1 1 0 Methyltransferase domain UPF0020 PF01170.18 BAD86324.1 - 0.017 14.8 0.0 0.042 13.5 0.0 1.6 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 N6_N4_Mtase PF01555.18 BAD86324.1 - 0.056 13.1 0.0 0.1 12.3 0.0 1.4 1 0 0 1 1 1 0 DNA methylase Ubie_methyltran PF01209.18 BAD86324.1 - 0.11 11.8 0.0 0.2 10.9 0.0 1.4 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family CMAS PF02353.20 BAD86324.1 - 0.13 11.5 0.0 0.21 10.8 0.0 1.3 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase DOT1 PF08123.13 BAD86324.1 - 0.17 11.4 0.0 0.43 10.1 0.0 1.6 2 0 0 2 2 2 0 Histone methylation protein DOT1 Rrf2 PF02082.20 BAD86325.1 - 0.00068 19.9 0.1 0.00074 19.8 0.1 1.1 1 0 0 1 1 1 1 Transcriptional regulator HTH_20 PF12840.7 BAD86325.1 - 0.0039 17.2 0.1 0.007 16.4 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.19 BAD86325.1 - 0.0041 17.3 0.2 0.0067 16.6 0.2 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.19 BAD86325.1 - 0.014 15.2 0.5 0.025 14.4 0.4 1.5 1 1 1 2 2 2 0 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 BAD86325.1 - 0.015 15.2 0.2 0.059 13.3 0.2 1.8 1 1 0 1 1 1 0 MarR family MarR PF01047.22 BAD86325.1 - 0.048 13.6 0.1 0.23 11.4 0.0 1.8 1 1 1 2 2 2 0 MarR family HTH_24 PF13412.6 BAD86325.1 - 0.13 11.8 0.0 0.19 11.3 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding CbiA PF01656.23 BAD86326.1 - 6e-18 65.1 0.0 9.4e-18 64.5 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 BAD86326.1 - 5.8e-15 55.6 0.0 8.5e-15 55.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain ParA PF10609.9 BAD86326.1 - 1.6e-09 37.6 0.0 2.3e-08 33.8 0.0 2.2 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 BAD86326.1 - 2.7e-06 26.8 0.8 5.7e-06 25.7 0.3 1.7 2 0 0 2 2 2 1 Anion-transporting ATPase CBP_BcsQ PF06564.12 BAD86326.1 - 5.7e-06 26.0 0.0 1.4e-05 24.7 0.0 1.8 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ SRP54 PF00448.22 BAD86326.1 - 0.0002 21.1 0.1 0.00058 19.5 0.1 1.8 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain Fer4_NifH PF00142.18 BAD86326.1 - 0.0007 19.1 0.0 0.072 12.5 0.0 2.1 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family APS_kinase PF01583.20 BAD86326.1 - 0.0012 18.7 0.0 0.0023 17.9 0.0 1.4 1 0 0 1 1 1 1 Adenylylsulphate kinase KTI12 PF08433.10 BAD86326.1 - 0.0067 15.9 0.0 0.011 15.2 0.0 1.3 1 0 0 1 1 1 1 Chromatin associated protein KTI12 MipZ PF09140.11 BAD86326.1 - 0.023 14.0 0.1 0.074 12.3 0.1 1.8 1 1 0 1 1 1 0 ATPase MipZ AAA_24 PF13479.6 BAD86326.1 - 0.035 13.8 0.6 0.06 13.1 0.6 1.5 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 BAD86326.1 - 0.037 13.3 0.0 0.069 12.4 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin ATP_bind_1 PF03029.17 BAD86326.1 - 0.041 13.7 0.0 0.074 12.8 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_26 PF13500.6 BAD86326.1 - 0.044 13.6 0.3 0.044 13.6 0.3 2.5 2 1 0 2 2 2 0 AAA domain CLP1_P PF16575.5 BAD86326.1 - 0.069 12.9 0.0 0.13 12.0 0.0 1.6 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_30 PF13604.6 BAD86326.1 - 0.17 11.6 0.0 0.38 10.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 BAD86326.1 - 0.22 11.8 0.1 0.59 10.4 0.1 1.7 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.15 BAD86326.1 - 1 9.3 3.0 0.58 10.1 0.2 2.1 3 0 0 3 3 3 0 NTPase Pribosyltran PF00156.27 BAD86327.1 - 3.4e-22 78.7 0.6 4.2e-22 78.4 0.6 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 BAD86327.1 - 0.001 18.6 0.0 0.0012 18.4 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase P5CR_dimer PF14748.6 BAD86327.1 - 0.28 11.5 2.2 1.7 9.0 2.2 2.0 1 1 0 1 1 1 0 Pyrroline-5-carboxylate reductase dimerisation PrsW-protease PF13367.6 BAD86328.1 - 0.0018 17.8 18.6 0.02 14.4 18.6 2.2 1 1 0 1 1 1 1 PrsW family intramembrane metalloprotease SUR7 PF06687.12 BAD86328.1 - 2.5 7.6 12.6 3 7.4 4.0 2.4 2 1 0 2 2 2 0 SUR7/PalI family S_4TM PF18159.1 BAD86328.1 - 3.1 7.0 4.1 16 4.7 0.8 2.5 2 2 0 2 2 2 0 SMODS-associating 4TM effector domain DNA_ligase_A_M PF01068.21 BAD86329.1 - 7.5e-65 218.4 0.9 1.6e-64 217.3 0.9 1.5 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.14 BAD86329.1 - 9.8e-40 136.7 0.2 9.8e-40 136.7 0.2 1.8 2 0 0 2 2 2 1 DNA ligase N terminus DNA_ligase_A_C PF04679.15 BAD86329.1 - 7.9e-22 77.7 0.0 3.2e-21 75.8 0.0 2.1 1 0 0 1 1 1 1 ATP dependent DNA ligase C terminal region RNA_ligase PF09414.10 BAD86329.1 - 3.1e-06 27.6 0.6 5.3e-06 26.8 0.6 1.4 1 0 0 1 1 1 1 RNA ligase DNA_ligase_OB_2 PF14743.6 BAD86329.1 - 0.0028 17.6 0.1 0.015 15.3 0.1 2.2 1 1 0 1 1 1 1 DNA ligase OB-like domain NES_C_h PF18208.1 BAD86329.1 - 0.046 14.0 0.7 15 5.9 0.4 2.5 2 0 0 2 2 2 0 Nicking enzyme C-terminal middle helical domain TPR_1 PF00515.28 BAD86329.1 - 0.15 11.9 0.1 0.56 10.1 0.1 2.0 1 0 0 1 1 1 0 Tetratricopeptide repeat GHMP_kinases_N PF00288.26 BAD86330.1 - 8.3e-07 29.2 0.7 1.6e-06 28.3 0.7 1.5 1 0 0 1 1 1 1 GHMP kinases N terminal domain Na_H_antiporter PF03553.14 BAD86331.1 - 1.5e-66 224.7 26.8 9e-66 222.1 22.6 2.7 2 1 0 2 2 2 1 Na+/H+ antiporter family OFeT_1 PF16955.5 BAD86331.1 - 0.15 11.7 3.5 0.37 10.5 0.4 2.6 3 0 0 3 3 3 0 Ferrous iron uptake permease, iron-lead transporter DUF4191 PF13829.6 BAD86331.1 - 0.3 10.4 8.9 2.8 7.2 1.4 3.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4191) TNFR_16_TM PF18422.1 BAD86331.1 - 8.9 6.4 8.1 0.59 10.1 0.5 2.8 2 0 0 2 2 2 0 Tumor necrosis factor receptor member 16 trans-membrane domain UDG PF03167.19 BAD86332.1 - 1.9e-47 161.1 0.0 2.5e-47 160.7 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily DUF1127 PF06568.11 BAD86332.1 - 0.18 11.5 0.2 0.3 10.8 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1127) FliG_C PF01706.16 BAD86333.1 - 0.055 13.7 0.3 0.1 12.8 0.0 1.5 2 0 0 2 2 2 0 FliG C-terminal domain IMP2_N PF18590.1 BAD86333.1 - 0.087 13.4 0.4 0.2 12.2 0.4 1.6 1 1 1 2 2 2 0 Immune Mapped Protein 2 (IMP2) N-terminal domain Radical_SAM PF04055.21 BAD86334.1 - 5.7e-22 78.9 4.6 7.4e-22 78.5 0.0 3.1 4 0 0 4 4 4 1 Radical SAM superfamily Fer4_12 PF13353.6 BAD86334.1 - 1.3e-06 28.7 0.0 4.8e-06 26.9 0.0 2.0 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 BAD86334.1 - 9.1e-06 25.8 0.0 2.9e-05 24.2 0.0 1.8 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF3213 PF11491.8 BAD86335.1 - 1.1e-49 166.5 2.9 1.4e-49 166.2 2.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3213) MCPsignal PF00015.21 BAD86336.1 - 2.2e-43 148.1 47.1 5.5e-38 130.5 17.4 4.0 1 1 2 4 4 4 4 Methyl-accepting chemotaxis protein (MCP) signalling domain dCache_1 PF02743.18 BAD86336.1 - 6.9e-42 144.0 0.1 6.9e-42 144.0 0.1 3.8 2 1 1 3 3 2 1 Cache domain Cache_3-Cache_2 PF17201.4 BAD86336.1 - 1.7e-15 57.1 0.4 1.7e-15 57.1 0.4 3.7 2 1 3 5 5 5 1 Cache 3/Cache 2 fusion domain HAMP PF00672.25 BAD86336.1 - 1.8e-09 37.9 8.6 2.3e-07 31.1 0.1 4.4 4 1 1 5 5 2 2 HAMP domain dCache_2 PF08269.11 BAD86336.1 - 1.4e-08 34.3 0.2 1.4e-08 34.3 0.2 4.8 3 3 0 3 3 3 1 Cache domain DUF948 PF06103.11 BAD86336.1 - 1.9e-05 24.8 43.7 0.027 14.7 4.2 7.3 5 2 2 7 7 6 3 Bacterial protein of unknown function (DUF948) Laminin_I PF06008.14 BAD86336.1 - 3.2e-05 23.7 35.6 0.0075 16.0 8.2 3.5 1 1 2 3 3 3 2 Laminin Domain I Fib_alpha PF08702.10 BAD86336.1 - 0.00021 21.5 23.6 0.23 11.6 0.5 4.7 4 1 1 5 5 4 2 Fibrinogen alpha/beta chain family Med30 PF11315.8 BAD86336.1 - 0.0011 19.2 18.5 0.031 14.5 4.1 3.0 2 1 0 2 2 2 2 Mediator complex subunit 30 Syntaxin-6_N PF09177.11 BAD86336.1 - 0.0016 18.9 24.5 0.23 12.0 2.3 5.0 3 1 1 4 4 4 2 Syntaxin 6, N-terminal AAA_13 PF13166.6 BAD86336.1 - 0.0034 16.1 30.7 0.043 12.5 8.1 2.2 1 1 1 2 2 2 2 AAA domain DUF1664 PF07889.12 BAD86336.1 - 0.012 15.7 32.0 0.21 11.6 2.4 5.4 2 2 3 5 5 5 0 Protein of unknown function (DUF1664) TACC_C PF05010.14 BAD86336.1 - 0.013 15.3 25.3 0.18 11.6 8.5 3.5 2 2 1 3 3 3 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal NPV_P10 PF05531.12 BAD86336.1 - 0.02 15.3 28.6 2.2 8.8 0.1 6.1 3 3 4 7 7 4 0 Nucleopolyhedrovirus P10 protein Snapin_Pallidin PF14712.6 BAD86336.1 - 0.021 15.2 22.1 0.71 10.3 1.1 5.3 5 1 1 6 6 4 0 Snapin/Pallidin GAPES1 PF17155.4 BAD86336.1 - 0.032 13.6 0.0 0.074 12.4 0.0 1.6 1 0 0 1 1 1 0 Gammaproteobacterial periplasmic sensor domain UPF0242 PF06785.11 BAD86336.1 - 0.071 13.2 22.1 2e+03 -1.3 22.1 3.5 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus PhageMin_Tail PF10145.9 BAD86336.1 - 0.077 12.9 24.2 0.5 10.2 7.4 4.3 1 1 2 3 3 3 0 Phage-related minor tail protein Spc7 PF08317.11 BAD86336.1 - 0.078 11.9 38.8 0.12 11.2 13.5 3.4 2 1 1 4 4 4 0 Spc7 kinetochore protein BORCS8 PF10167.9 BAD86336.1 - 0.13 12.2 18.6 0.49 10.3 0.2 4.7 3 1 1 4 4 4 0 BLOC-1-related complex sub-unit 8 sCache_2 PF17200.4 BAD86336.1 - 0.16 11.9 0.0 0.16 11.9 0.0 3.6 3 1 0 3 3 2 0 Single Cache domain 2 Sec34 PF04136.15 BAD86336.1 - 0.18 11.7 20.0 7.2 6.5 2.2 4.7 2 2 2 4 4 4 0 Sec34-like family BLOC1_2 PF10046.9 BAD86336.1 - 0.22 11.8 29.1 0.22 11.8 2.1 5.6 3 2 2 6 6 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Med9 PF07544.13 BAD86336.1 - 0.23 11.5 12.0 0.85 9.7 1.2 4.4 3 1 0 3 3 3 0 RNA polymerase II transcription mediator complex subunit 9 Mod_r PF07200.13 BAD86336.1 - 0.24 11.5 19.9 5.3 7.1 0.1 4.0 2 2 1 3 3 3 0 Modifier of rudimentary (Mod(r)) protein Prominin PF05478.11 BAD86336.1 - 0.24 9.3 23.2 0.24 9.3 7.8 3.0 2 2 1 3 3 3 0 Prominin DUF885 PF05960.11 BAD86336.1 - 0.25 10.9 19.9 0.53 9.9 10.6 2.6 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF885) ApoLp-III PF07464.11 BAD86336.1 - 0.25 11.4 41.2 0.091 12.8 4.5 5.0 3 1 2 5 5 4 0 Apolipophorin-III precursor (apoLp-III) RPW8 PF05659.11 BAD86336.1 - 0.28 10.9 16.5 2.7 7.7 0.2 4.9 2 2 3 5 5 5 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 HSBP1 PF06825.12 BAD86336.1 - 0.32 10.9 2.4 1.8 8.5 0.7 3.3 3 0 0 3 3 2 0 Heat shock factor binding protein 1 DUF3584 PF12128.8 BAD86336.1 - 0.36 8.3 32.8 0.031 11.8 11.4 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3584) LXG PF04740.12 BAD86336.1 - 0.4 10.4 26.5 2 8.1 4.4 4.9 2 1 1 4 4 4 0 LXG domain of WXG superfamily CheZ PF04344.13 BAD86336.1 - 0.55 10.1 24.3 0.14 12.1 7.4 3.4 1 1 3 4 4 4 0 Chemotaxis phosphatase, CheZ Katanin_con80 PF13925.6 BAD86336.1 - 0.67 10.0 7.6 0.17 11.9 0.6 3.3 2 2 1 3 3 3 0 con80 domain of Katanin phiKZ_IP PF12699.7 BAD86336.1 - 0.73 8.9 28.1 0.13 11.4 4.0 3.8 4 0 0 4 4 3 0 phiKZ-like phage internal head proteins IFT57 PF10498.9 BAD86336.1 - 0.78 8.6 24.7 0.38 9.7 3.3 3.3 2 1 0 3 3 3 0 Intra-flagellar transport protein 57 Syntaxin_2 PF14523.6 BAD86336.1 - 0.8 10.1 21.6 1.6 9.1 0.8 5.2 3 2 1 4 4 3 0 Syntaxin-like protein YkyA PF10368.9 BAD86336.1 - 1 9.0 33.0 3.4 7.3 10.3 3.6 2 2 0 2 2 2 0 Putative cell-wall binding lipoprotein Sec8_exocyst PF04048.14 BAD86336.1 - 1.1 9.2 18.3 0.12 12.2 2.1 4.3 2 2 2 4 4 4 0 Sec8 exocyst complex component specific domain ISG65-75 PF11727.8 BAD86336.1 - 1.1 8.4 26.7 3.9 6.6 1.8 3.4 1 1 3 4 4 4 0 Invariant surface glycoprotein Laminin_II PF06009.12 BAD86336.1 - 1.3 9.0 40.2 0.8 9.7 5.6 5.9 1 1 6 7 7 7 0 Laminin Domain II AIP3 PF03915.13 BAD86336.1 - 1.5 7.8 28.1 1.8 7.6 11.5 2.6 1 1 2 3 3 3 0 Actin interacting protein 3 FlgN PF05130.12 BAD86336.1 - 2.4 8.6 34.8 2.3 8.7 0.7 4.4 1 1 3 4 4 4 0 FlgN protein KAR9 PF08580.10 BAD86336.1 - 2.8 6.4 16.9 0.057 12.0 6.6 2.7 1 1 2 3 3 3 0 Yeast cortical protein KAR9 Vps53_N PF04100.12 BAD86336.1 - 3.4 6.5 30.1 0.91 8.4 8.3 4.2 1 1 3 5 5 5 0 Vps53-like, N-terminal Serine_rich PF08824.10 BAD86336.1 - 3.6 7.6 14.8 21 5.0 0.7 4.2 2 2 2 4 4 4 0 Serine rich protein interaction domain ANAPC4 PF12896.7 BAD86336.1 - 3.8 6.9 8.8 0.89 9.0 0.3 3.7 3 2 1 4 4 3 0 Anaphase-promoting complex, cyclosome, subunit 4 ERM PF00769.19 BAD86336.1 - 5.6 6.7 34.8 9.3 6.0 15.6 2.9 1 1 2 3 3 3 0 Ezrin/radixin/moesin family CENP-K PF11802.8 BAD86336.1 - 6.1 6.3 20.4 13 5.3 1.1 3.7 1 1 0 3 3 3 0 Centromere-associated protein K TMPIT PF07851.13 BAD86336.1 - 6.8 5.8 20.0 7.5 5.7 5.5 3.5 1 1 3 4 4 4 0 TMPIT-like protein HisKA PF00512.25 BAD86336.1 - 7.8 6.6 18.9 12 6.0 0.2 6.3 5 2 1 6 6 6 0 His Kinase A (phospho-acceptor) domain DUF3450 PF11932.8 BAD86336.1 - 8.2 5.6 33.0 0.16 11.3 6.6 4.1 1 1 2 4 4 4 0 Protein of unknown function (DUF3450) HisKA_3 PF07730.13 BAD86336.1 - 9 6.9 26.6 5 7.7 0.3 7.1 4 2 3 7 7 7 0 Histidine kinase HAUS-augmin3 PF14932.6 BAD86336.1 - 9.1 5.8 24.5 1 8.9 2.6 3.4 1 1 0 3 3 3 0 HAUS augmin-like complex subunit 3 Cauli_AT PF03233.13 BAD86336.1 - 9.3 6.1 17.0 4.5 7.2 1.1 4.5 2 2 2 4 4 4 0 Aphid transmission protein sCache_3_2 PF17203.4 BAD86336.1 - 9.8 6.3 13.2 0.93 9.6 0.1 4.1 4 1 0 4 4 3 0 Single cache domain 3 DUF2139 PF09910.9 BAD86337.1 - 2.2e-153 510.4 0.2 2.7e-153 510.1 0.2 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2139) LrgA PF03788.14 BAD86338.1 - 4e-29 100.4 7.9 4.7e-29 100.2 7.9 1.1 1 0 0 1 1 1 1 LrgA family 2HCT PF03390.15 BAD86338.1 - 0.0044 15.7 3.7 0.005 15.5 3.7 1.0 1 0 0 1 1 1 1 2-hydroxycarboxylate transporter family LrgB PF04172.16 BAD86339.1 - 7.4e-74 247.9 13.5 8.3e-74 247.7 13.5 1.0 1 0 0 1 1 1 1 LrgB-like family TFX_C PF14601.6 BAD86340.1 - 1.6e-23 82.5 0.0 2.2e-23 82.0 0.0 1.2 1 0 0 1 1 1 1 DNA_binding protein, TFX, C-term Sigma70_r4 PF04545.16 BAD86340.1 - 1e-07 31.4 2.2 2e-07 30.4 2.2 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 GerE PF00196.19 BAD86340.1 - 3.1e-07 29.8 0.6 6e-07 28.9 0.6 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 BAD86340.1 - 1.3e-05 24.8 0.6 2.3e-05 24.0 0.6 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_37 PF13744.6 BAD86340.1 - 0.00054 19.9 0.2 0.0016 18.4 0.2 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.6 BAD86340.1 - 0.0012 18.5 0.4 0.0029 17.3 0.4 1.8 1 0 0 1 1 1 1 Homeodomain-like domain KORA PF16509.5 BAD86340.1 - 0.0074 16.6 0.2 0.014 15.6 0.2 1.5 1 0 0 1 1 1 1 TrfB plasmid transcriptional repressor HTH_7 PF02796.15 BAD86340.1 - 0.0085 16.1 0.1 0.015 15.3 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_38 PF13936.6 BAD86340.1 - 0.017 14.9 0.2 0.038 13.7 0.2 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain UPF0122 PF04297.14 BAD86340.1 - 0.023 14.9 0.7 0.041 14.1 0.5 1.6 2 0 0 2 2 2 0 Putative helix-turn-helix protein, YlxM / p13 like MarR_2 PF12802.7 BAD86340.1 - 0.025 14.5 0.4 0.085 12.8 0.1 2.0 2 0 0 2 2 2 0 MarR family HTH_28 PF13518.6 BAD86340.1 - 0.025 14.7 0.3 0.052 13.7 0.3 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain KorB PF08535.10 BAD86340.1 - 0.026 14.5 0.1 0.045 13.8 0.1 1.5 1 0 0 1 1 1 0 KorB domain HTH_Crp_2 PF13545.6 BAD86340.1 - 0.032 14.2 0.1 0.1 12.6 0.0 1.9 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_29 PF13551.6 BAD86340.1 - 0.041 13.9 0.1 0.081 13.0 0.1 1.6 1 0 0 1 1 1 0 Winged helix-turn helix HTH_3 PF01381.22 BAD86340.1 - 0.045 13.8 0.4 0.13 12.3 0.3 1.8 2 1 0 2 2 2 0 Helix-turn-helix HTH_19 PF12844.7 BAD86340.1 - 0.046 13.7 0.4 0.09 12.8 0.4 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain MarR PF01047.22 BAD86340.1 - 0.073 13.0 0.1 0.17 11.8 0.1 1.7 1 0 0 1 1 1 0 MarR family HTH_31 PF13560.6 BAD86340.1 - 0.076 13.4 0.2 0.2 12.0 0.2 1.8 1 1 0 1 1 1 0 Helix-turn-helix domain Pex14_N PF04695.13 BAD86340.1 - 0.16 12.6 0.1 0.2 12.3 0.1 1.2 1 0 0 1 1 1 0 Peroxisomal membrane anchor protein (Pex14p) conserved region RNA_Me_trans PF04252.13 BAD86341.1 - 1.3e-47 162.0 0.1 1.5e-47 161.7 0.1 1.1 1 0 0 1 1 1 1 Predicted SAM-dependent RNA methyltransferase DUF2103 PF09876.9 BAD86342.1 - 2.1e-23 82.1 0.1 2.4e-23 82.0 0.1 1.0 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2103) UPF0175 PF03683.13 BAD86343.1 - 1.4e-16 60.0 0.0 1.8e-16 59.6 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) alpha-hel2 PF14456.6 BAD86343.1 - 0.0014 18.1 0.0 0.0015 17.9 0.0 1.0 1 0 0 1 1 1 1 Alpha-helical domain 2 MHC_II_alpha PF00993.20 BAD86343.1 - 0.096 12.4 0.0 0.14 11.9 0.0 1.2 1 0 0 1 1 1 0 Class II histocompatibility antigen, alpha domain ANT PF03374.14 BAD86343.1 - 0.2 12.0 0.0 0.27 11.6 0.0 1.3 1 0 0 1 1 1 0 Phage antirepressor protein KilAC domain DUF3368 PF11848.8 BAD86344.1 - 1.6e-09 37.4 0.1 3.1e-09 36.5 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF3368) PPR PF01535.20 BAD86344.1 - 0.046 14.0 0.1 1.7 9.0 0.1 2.4 2 0 0 2 2 2 0 PPR repeat DUF5591 PF17884.1 BAD86345.1 - 9.7e-51 171.7 0.1 1.9e-50 170.7 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF5591) PUA PF01472.20 BAD86345.1 - 8.7e-11 41.6 2.3 1.6e-10 40.8 2.3 1.4 1 0 0 1 1 1 1 PUA domain TGT_C2 PF14810.6 BAD86345.1 - 9.8e-07 28.8 0.0 2e-06 27.9 0.0 1.5 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase B12-binding PF02310.19 BAD86345.1 - 0.14 12.2 0.0 2.6 8.1 0.0 2.3 2 0 0 2 2 2 0 B12 binding domain EzrA PF06160.12 BAD86346.1 - 2.4e-05 22.7 49.4 0.0062 14.8 19.6 2.3 1 1 1 2 2 2 2 Septation ring formation regulator, EzrA WXG100 PF06013.12 BAD86346.1 - 0.00019 21.6 13.7 1 9.6 0.4 4.9 3 1 1 4 4 4 2 Proteins of 100 residues with WXG MscS_porin PF12795.7 BAD86346.1 - 0.00042 20.0 49.8 0.035 13.7 5.6 4.7 1 1 2 3 3 3 2 Mechanosensitive ion channel porin domain FlgN PF05130.12 BAD86346.1 - 0.0049 17.4 6.7 0.0049 17.4 6.7 3.5 1 1 2 3 3 2 1 FlgN protein APG6_N PF17675.1 BAD86346.1 - 0.0056 17.2 20.7 0.0056 17.2 20.7 4.3 1 1 2 3 3 2 1 Apg6 coiled-coil region DUF1664 PF07889.12 BAD86346.1 - 0.0071 16.4 33.0 0.6 10.2 9.0 3.9 1 1 2 4 4 4 2 Protein of unknown function (DUF1664) Seryl_tRNA_N PF02403.22 BAD86346.1 - 0.0091 16.2 53.6 0.025 14.8 16.3 4.9 1 1 2 4 4 4 2 Seryl-tRNA synthetase N-terminal domain Occludin_ELL PF07303.13 BAD86346.1 - 0.015 16.0 42.2 0.47 11.2 12.6 3.9 2 1 2 4 4 4 0 Occludin homology domain PE PF00934.20 BAD86346.1 - 0.023 15.0 2.5 3.1 8.2 0.8 4.0 3 2 2 5 5 4 0 PE family DUF4140 PF13600.6 BAD86346.1 - 0.029 14.8 1.4 0.029 14.8 1.4 5.3 3 1 1 4 4 4 0 N-terminal domain of unknown function (DUF4140) DUF5082 PF16888.5 BAD86346.1 - 0.067 13.5 39.3 0.33 11.2 0.5 4.3 2 1 2 4 4 4 0 Domain of unknown function (DUF5082) CcdB PF01845.17 BAD86346.1 - 0.084 13.1 2.3 8.6 6.7 0.0 3.2 3 1 0 3 3 3 0 CcdB protein Laminin_I PF06008.14 BAD86346.1 - 0.087 12.5 41.0 0.02 14.6 14.5 2.8 1 1 0 2 2 2 0 Laminin Domain I ATG16 PF08614.11 BAD86346.1 - 0.099 12.9 43.3 0.7 10.1 16.9 2.8 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) DUF948 PF06103.11 BAD86346.1 - 0.12 12.6 16.3 1.6 9.0 2.9 3.9 2 2 1 3 3 3 0 Bacterial protein of unknown function (DUF948) ERM PF00769.19 BAD86346.1 - 0.12 12.1 59.8 0.43 10.4 28.2 3.1 1 1 2 3 3 3 0 Ezrin/radixin/moesin family CENP-F_leu_zip PF10473.9 BAD86346.1 - 0.16 12.0 57.0 5.5 7.0 20.0 4.1 1 1 2 3 3 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Laminin_II PF06009.12 BAD86346.1 - 0.17 11.9 35.3 0.38 10.8 3.3 3.7 1 1 3 4 4 4 0 Laminin Domain II CENP-H PF05837.12 BAD86346.1 - 0.19 12.2 51.2 1 9.8 14.8 4.1 2 2 2 4 4 4 0 Centromere protein H (CENP-H) MCPsignal PF00015.21 BAD86346.1 - 0.22 11.3 17.6 0.14 12.0 3.2 3.1 2 1 1 3 3 3 0 Methyl-accepting chemotaxis protein (MCP) signalling domain T7SS_ESX_EspC PF10824.8 BAD86346.1 - 0.23 12.0 2.3 0.59 10.6 0.1 2.8 3 1 1 4 4 1 0 Excreted virulence factor EspC, type VII ESX diderm Syntaxin-6_N PF09177.11 BAD86346.1 - 0.23 12.0 33.6 0.058 13.9 5.6 4.5 1 1 2 3 3 3 0 Syntaxin 6, N-terminal Atg14 PF10186.9 BAD86346.1 - 0.23 10.5 55.2 0.39 9.8 22.0 3.0 1 1 1 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 PspA_IM30 PF04012.12 BAD86346.1 - 0.28 10.7 52.6 0.019 14.6 24.2 3.5 1 1 0 2 2 2 0 PspA/IM30 family Filament PF00038.21 BAD86346.1 - 0.4 10.2 51.8 32 4.0 51.7 3.6 1 1 0 1 1 1 0 Intermediate filament protein Snapin_Pallidin PF14712.6 BAD86346.1 - 0.43 11.0 44.6 1.8 9.0 6.1 4.7 1 1 4 5 5 5 0 Snapin/Pallidin Fez1 PF06818.15 BAD86346.1 - 0.56 10.6 49.8 0.39 11.2 22.0 3.0 1 1 2 3 3 3 0 Fez1 DUF4200 PF13863.6 BAD86346.1 - 0.63 10.5 70.4 0.47 10.9 25.5 4.0 2 2 2 4 4 4 0 Domain of unknown function (DUF4200) Sec34 PF04136.15 BAD86346.1 - 0.66 9.8 26.7 3 7.7 6.6 3.6 1 1 2 4 4 4 0 Sec34-like family TMPIT PF07851.13 BAD86346.1 - 0.93 8.7 43.2 0.18 11.0 14.5 2.9 1 1 3 4 4 4 0 TMPIT-like protein DUF724 PF05266.14 BAD86346.1 - 1 9.2 51.9 0.52 10.1 16.1 3.3 1 1 3 4 4 4 0 Protein of unknown function (DUF724) DUF4407 PF14362.6 BAD86346.1 - 1 8.6 38.5 0.013 14.9 14.4 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) AAA_13 PF13166.6 BAD86346.1 - 1 7.9 49.4 1.2 7.7 11.3 2.7 1 1 1 2 2 2 0 AAA domain Prefoldin_2 PF01920.20 BAD86346.1 - 1.4 8.9 58.6 0.064 13.2 3.7 6.4 2 1 2 5 5 5 0 Prefoldin subunit FH2 PF02181.23 BAD86346.1 - 1.5 7.9 35.8 6.8 5.7 8.3 3.0 1 1 1 2 2 2 0 Formin Homology 2 Domain T3SSipB PF16535.5 BAD86346.1 - 1.6 9.2 28.1 1.8 9.0 12.0 3.6 1 1 1 3 3 3 0 Type III cell invasion protein SipB DUF2935 PF11155.8 BAD86346.1 - 1.9 8.9 21.4 1.9 8.8 1.5 3.8 2 2 1 3 3 3 0 Domain of unknown function (DUF2935) STAT_alpha PF01017.20 BAD86346.1 - 1.9 8.3 43.3 0.26 11.2 2.2 3.9 2 1 1 3 3 3 0 STAT protein, all-alpha domain NPV_P10 PF05531.12 BAD86346.1 - 2.4 8.7 24.2 22 5.6 0.1 4.9 1 1 3 4 4 4 0 Nucleopolyhedrovirus P10 protein Spc7 PF08317.11 BAD86346.1 - 2.5 6.9 58.1 0.76 8.6 25.2 3.0 1 1 1 2 2 2 0 Spc7 kinetochore protein TPR_MLP1_2 PF07926.12 BAD86346.1 - 2.5 8.2 52.9 8.8 6.4 11.2 4.4 1 1 2 4 4 4 0 TPR/MLP1/MLP2-like protein Glu_syn_central PF04898.14 BAD86346.1 - 3.6 7.0 9.0 0.66 9.4 4.9 1.8 1 1 1 2 2 2 0 Glutamate synthase central domain DUF3584 PF12128.8 BAD86346.1 - 4 4.8 52.1 5.8 4.3 25.3 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3584) GAS PF13851.6 BAD86346.1 - 4.6 6.5 65.4 0.51 9.7 14.4 4.0 1 1 3 4 4 4 0 Growth-arrest specific micro-tubule binding OmpH PF03938.14 BAD86346.1 - 4.9 7.5 64.2 0.4 11.0 22.8 3.7 1 1 2 3 3 3 0 Outer membrane protein (OmpH-like) DUF4164 PF13747.6 BAD86346.1 - 6.2 7.2 38.0 1.8 8.9 5.1 4.5 1 1 3 4 4 4 0 Domain of unknown function (DUF4164) GldM_N PF12081.8 BAD86346.1 - 7.3 6.6 34.4 5.6 7.0 13.9 3.1 1 1 1 2 2 2 0 GldM N-terminal domain Bul1_C PF04426.12 BAD86346.1 - 8.1 5.8 28.3 0.77 9.1 3.8 2.4 1 1 1 2 2 2 0 Bul1 C terminus Tropomyosin_1 PF12718.7 BAD86346.1 - 8.4 6.5 61.8 2.2 8.4 18.5 4.6 1 1 2 4 4 4 0 Tropomyosin like DUF4201 PF13870.6 BAD86346.1 - 9 6.0 57.6 1.4 8.7 19.6 4.0 1 1 2 4 4 4 0 Domain of unknown function (DUF4201) Alanine_zipper PF11839.8 BAD86346.1 - 9.5 6.7 16.6 0.11 12.9 2.7 3.9 3 1 1 4 4 4 0 Alanine-zipper, major outer membrane lipoprotein YabA PF06156.13 BAD86346.1 - 9.8 6.9 44.5 3.7 8.2 12.5 4.2 1 1 3 4 4 4 0 Initiation control protein YabA UPF0184 PF03670.13 BAD86346.1 - 9.9 6.6 16.1 2.2 8.8 1.2 3.6 2 1 1 3 3 3 0 Uncharacterised protein family (UPF0184) AA_kinase PF00696.28 BAD86347.1 - 7.3e-30 104.3 0.2 1e-29 103.8 0.2 1.2 1 0 0 1 1 1 1 Amino acid kinase family SBP_bac_5 PF00496.22 BAD86347.1 - 0.065 12.2 0.0 0.11 11.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 5 Middle LptE PF04390.12 BAD86347.1 - 0.17 12.6 0.1 1.9 9.2 0.0 2.2 2 0 0 2 2 2 0 Lipopolysaccharide-assembly NAD_binding_8 PF13450.6 BAD86348.1 - 7e-13 48.6 0.2 1.4e-12 47.6 0.2 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Amino_oxidase PF01593.24 BAD86348.1 - 2.7e-11 43.4 0.5 2.6e-10 40.2 0.5 2.2 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase Pyr_redox_2 PF07992.14 BAD86348.1 - 5.5e-11 42.2 1.0 1.2e-05 24.7 0.0 2.4 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 BAD86348.1 - 3.2e-09 36.8 2.1 1.4e-08 34.8 2.1 1.8 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox PF00070.27 BAD86348.1 - 1.4e-06 28.7 2.1 0.0015 19.0 0.2 3.2 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 BAD86348.1 - 1.1e-05 24.7 0.1 1.8e-05 24.1 0.1 1.3 1 0 0 1 1 1 1 FAD binding domain FAD_binding_3 PF01494.19 BAD86348.1 - 0.00045 19.6 0.2 0.0015 17.9 0.3 1.8 2 0 0 2 2 2 1 FAD binding domain FAD_oxidored PF12831.7 BAD86348.1 - 0.0012 18.3 0.1 0.0023 17.3 0.1 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 BAD86348.1 - 0.008 14.9 0.1 0.015 14.0 0.1 1.4 1 0 0 1 1 1 1 HI0933-like protein MCRA PF06100.11 BAD86348.1 - 0.053 12.3 0.1 0.072 11.9 0.1 1.1 1 0 0 1 1 1 0 MCRA family DUF4514 PF14986.6 BAD86348.1 - 0.17 11.9 0.3 0.44 10.6 0.3 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4514) ApbA PF02558.16 BAD86348.1 - 0.19 11.4 1.5 0.31 10.7 0.3 2.0 3 0 0 3 3 3 0 Ketopantoate reductase PanE/ApbA Fer4_12 PF13353.6 BAD86349.1 - 5.1e-15 56.0 0.0 1.3e-14 54.6 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain Radical_SAM PF04055.21 BAD86349.1 - 3.6e-11 43.7 0.0 7.4e-11 42.7 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 BAD86349.1 - 7.3e-10 39.0 1.3 4.8e-09 36.4 0.0 2.4 2 0 0 2 2 2 1 4Fe-4S single cluster domain ABC_tran PF00005.27 BAD86350.1 - 5.3e-29 101.5 0.0 7.7e-29 100.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 BAD86350.1 - 6e-12 46.0 0.0 7e-05 22.8 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 BAD86350.1 - 4.4e-06 26.3 0.1 0.00026 20.5 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 BAD86350.1 - 0.0011 19.6 0.1 0.0017 18.9 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 BAD86350.1 - 0.0017 18.0 0.1 0.0037 17.0 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 BAD86350.1 - 0.0036 17.7 0.0 0.0056 17.1 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 BAD86350.1 - 0.0063 16.8 0.0 0.018 15.3 0.0 1.8 2 0 0 2 2 1 1 AAA domain AAA_30 PF13604.6 BAD86350.1 - 0.0073 16.1 0.1 0.11 12.2 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 BAD86350.1 - 0.0096 16.1 0.0 0.027 14.6 0.0 1.8 2 0 0 2 2 2 1 AAA domain Adeno_IVa2 PF02456.15 BAD86350.1 - 0.011 14.6 0.1 0.016 14.0 0.1 1.2 1 0 0 1 1 1 0 Adenovirus IVa2 protein MobB PF03205.14 BAD86350.1 - 0.011 15.6 0.1 0.02 14.8 0.1 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_24 PF13479.6 BAD86350.1 - 0.012 15.3 0.0 0.03 14.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain cobW PF02492.19 BAD86350.1 - 0.013 15.1 0.1 0.024 14.2 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain TsaE PF02367.17 BAD86350.1 - 0.019 15.0 0.1 0.32 11.0 0.1 2.2 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ATPase_2 PF01637.18 BAD86350.1 - 0.024 14.5 0.3 0.056 13.4 0.1 1.6 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA PF00004.29 BAD86350.1 - 0.025 15.0 0.0 0.14 12.5 0.0 2.3 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 BAD86350.1 - 0.025 14.5 0.0 0.046 13.6 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_14 PF13173.6 BAD86350.1 - 0.032 14.3 0.0 0.074 13.1 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 BAD86350.1 - 0.035 14.4 0.4 0.46 10.8 0.2 2.1 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 BAD86350.1 - 0.038 14.1 0.1 0.075 13.1 0.1 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_28 PF13521.6 BAD86350.1 - 0.068 13.4 0.0 0.13 12.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain BMC PF00936.19 BAD86350.1 - 0.096 12.7 0.0 0.21 11.6 0.0 1.5 1 0 0 1 1 1 0 BMC domain AAA_15 PF13175.6 BAD86350.1 - 0.098 12.3 0.1 0.13 11.9 0.1 1.1 1 0 0 1 1 1 0 AAA ATPase domain NB-ARC PF00931.22 BAD86350.1 - 0.1 11.8 0.1 0.2 10.8 0.1 1.4 1 0 0 1 1 1 0 NB-ARC domain AAA_18 PF13238.6 BAD86350.1 - 0.1 13.1 0.0 0.18 12.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 BAD86350.1 - 0.12 12.3 0.0 0.23 11.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) T2SSE PF00437.20 BAD86350.1 - 0.14 11.2 0.0 0.2 10.7 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein SRP54 PF00448.22 BAD86350.1 - 0.14 11.8 0.0 0.24 11.0 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Mg_chelatase PF01078.21 BAD86350.1 - 0.15 11.4 0.0 0.24 10.7 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI NTPase_1 PF03266.15 BAD86350.1 - 0.16 11.9 0.2 0.35 10.8 0.2 1.6 1 0 0 1 1 1 0 NTPase AAA_7 PF12775.7 BAD86350.1 - 0.18 11.3 0.0 0.27 10.7 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region DUF3584 PF12128.8 BAD86350.1 - 0.18 9.3 0.1 0.27 8.7 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) NACHT PF05729.12 BAD86350.1 - 0.21 11.5 0.2 0.36 10.7 0.2 1.3 1 0 0 1 1 1 0 NACHT domain ABC2_membrane PF01061.24 BAD86351.1 - 0.0041 16.6 25.4 0.012 15.0 24.9 1.7 1 1 0 1 1 1 1 ABC-2 type transporter TMEM251 PF15190.6 BAD86351.1 - 3.7 7.5 7.3 0.32 10.9 0.2 2.6 2 2 1 3 3 3 0 Transmembrane protein 251 AFOR_N PF02730.15 BAD86352.1 - 5.1e-41 140.7 0.0 1.7e-40 139.0 0.0 1.8 2 0 0 2 2 2 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain AFOR_C PF01314.18 BAD86352.1 - 1.8e-19 70.0 0.0 2.9e-19 69.3 0.0 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 FBPase_3 PF01950.16 BAD86353.1 - 1.8e-187 622.9 0.0 2e-187 622.7 0.0 1.0 1 0 0 1 1 1 1 Fructose-1,6-bisphosphatase Peptidase_M20 PF01546.28 BAD86355.1 - 5.1e-30 104.7 0.0 1.2e-29 103.6 0.0 1.5 1 1 1 2 2 2 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 BAD86355.1 - 5e-10 39.3 0.0 1.8e-09 37.5 0.0 2.0 2 1 0 2 2 2 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 BAD86355.1 - 0.00011 22.0 0.0 0.00018 21.3 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M28 PAPS_reduct PF01507.19 BAD86356.1 - 1.1e-36 126.5 0.0 2e-36 125.7 0.0 1.4 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family NAD_synthase PF02540.17 BAD86356.1 - 6e-06 25.6 0.0 2.1e-05 23.8 0.0 1.8 2 0 0 2 2 2 1 NAD synthase QueC PF06508.13 BAD86356.1 - 1.7e-05 24.4 0.0 3.1e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 BAD86356.1 - 0.038 12.8 0.0 0.097 11.4 0.0 1.7 3 0 0 3 3 3 0 tRNA methyl transferase Diphthami_syn_2 PF01902.17 BAD86356.1 - 0.12 11.8 0.1 0.33 10.4 0.1 1.8 1 1 0 1 1 1 0 Diphthamide synthase Lon_C PF05362.13 BAD86357.1 - 1.2e-12 47.9 1.7 2.4e-12 46.9 1.7 1.5 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain ChlI PF13541.6 BAD86357.1 - 0.0038 17.1 0.0 0.0098 15.7 0.0 1.7 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase DUF357 PF04010.13 BAD86357.1 - 0.055 13.5 19.3 0.12 12.5 2.3 4.8 4 1 0 4 4 4 0 Protein of unknown function (DUF357) PmbA_TldD PF01523.16 BAD86358.1 - 3.3e-65 220.7 0.3 5.9e-65 219.9 0.3 1.4 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.16 BAD86359.1 - 1.1e-53 182.9 0.3 1.4e-53 182.6 0.3 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase DUF257 PF03192.13 BAD86360.1 - 1.1e-78 263.8 0.1 1.2e-78 263.6 0.1 1.0 1 0 0 1 1 1 1 Pyrococcus protein of unknown function, DUF257 Alpha-amylase PF00128.24 BAD86361.1 - 1.5e-53 182.6 0.0 2e-53 182.1 0.0 1.2 1 0 0 1 1 1 1 Alpha amylase, catalytic domain TIG PF01833.24 BAD86361.1 - 1e-08 35.1 0.0 2.7e-08 33.8 0.0 1.7 1 0 0 1 1 1 1 IPT/TIG domain Alpha-amylase_C PF02806.18 BAD86361.1 - 2.6e-07 31.0 0.0 7.7e-07 29.5 0.0 1.8 1 0 0 1 1 1 1 Alpha amylase, C-terminal all-beta domain Malt_amylase_C PF16657.5 BAD86361.1 - 0.004 17.2 0.0 0.0075 16.4 0.0 1.5 1 0 0 1 1 1 1 Maltogenic Amylase, C-terminal domain Bac_A_amyl_C PF18612.1 BAD86361.1 - 0.021 14.6 0.0 0.045 13.5 0.0 1.4 1 0 0 1 1 1 0 Bacterial Alpha amylase C-terminal domain bPH_3 PF14470.6 BAD86362.1 - 1.1e-23 83.3 0.2 2e-23 82.5 0.2 1.4 1 0 0 1 1 1 1 Bacterial PH domain SHOCT PF09851.9 BAD86362.1 - 1.3e-11 43.9 5.2 3.1e-11 42.6 5.2 1.7 1 0 0 1 1 1 1 Short C-terminal domain bPH_1 PF08000.11 BAD86362.1 - 0.0011 19.0 0.1 0.003 17.6 0.1 1.8 1 1 0 1 1 1 1 Bacterial PH domain GvpG PF05120.12 BAD86362.1 - 0.0054 16.7 1.3 0.0075 16.3 0.3 1.8 2 0 0 2 2 2 1 Gas vesicle protein G DMAP_binding PF06464.11 BAD86362.1 - 0.009 16.8 3.2 0.009 16.8 3.2 2.1 2 0 0 2 2 2 1 DMAP1-binding Domain CmlA_N PF18456.1 BAD86363.1 - 0.039 13.3 0.2 0.088 12.1 0.1 1.6 1 1 1 2 2 2 0 Diiron non-heme beta-hydroxylase N-terminal domain LTD PF00932.19 BAD86367.1 - 5.2e-11 42.9 0.4 8.9e-10 38.9 0.2 3.1 3 0 0 3 3 3 1 Lamin Tail Domain Big_3_5 PF16640.5 BAD86367.1 - 0.00046 20.3 1.7 0.0017 18.5 0.0 2.8 2 0 0 2 2 2 1 Bacterial Ig-like domain (group 3) PapJ PF14855.6 BAD86367.1 - 0.0079 15.9 0.0 0.015 15.0 0.0 1.4 1 0 0 1 1 1 1 Pilus-assembly fibrillin subunit, chaperone BtpA PF03437.15 BAD86368.1 - 5.5e-107 356.9 0.2 6.2e-107 356.8 0.2 1.0 1 0 0 1 1 1 1 BtpA family Bac_luciferase PF00296.20 BAD86368.1 - 0.05 13.0 0.0 0.91 8.9 0.0 2.1 2 0 0 2 2 2 0 Luciferase-like monooxygenase Rib PF08428.10 BAD86369.1 - 0.098 12.7 0.1 1.6 8.8 0.0 2.9 3 0 0 3 3 3 0 Rib/alpha-like repeat EF-hand_5 PF13202.6 BAD86370.1 - 0.015 14.8 20.3 0.58 9.8 0.4 6.2 6 0 0 6 6 6 0 EF hand EF-hand_1 PF00036.32 BAD86370.1 - 0.5 10.0 18.2 4.1 7.2 0.1 5.8 4 1 1 5 5 5 0 EF hand SPOR PF05036.13 BAD86373.1 - 0.014 15.7 0.3 0.27 11.6 0.1 2.7 2 1 1 3 3 3 0 Sporulation related domain PGM_PMM_I PF02878.16 BAD86374.1 - 6.3e-44 149.0 0.0 1.1e-43 148.3 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 BAD86374.1 - 6.1e-20 71.8 0.0 1.4e-19 70.6 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 BAD86374.1 - 1.5e-19 70.3 0.0 3.1e-19 69.3 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 BAD86374.1 - 5.8e-08 32.8 0.0 1.4e-07 31.6 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain EamA PF00892.20 BAD86375.1 - 5.2e-23 81.7 19.9 5.8e-23 81.6 19.9 1.0 1 0 0 1 1 1 1 EamA-like transporter family CRT-like PF08627.10 BAD86375.1 - 0.16 10.9 4.6 0.16 10.8 4.6 1.1 1 0 0 1 1 1 0 CRT-like, chloroquine-resistance transporter-like TMEM234 PF10639.9 BAD86375.1 - 0.49 10.4 5.9 0.47 10.5 1.7 2.0 1 1 1 2 2 2 0 Putative transmembrane family 234 DUF835 PF05763.12 BAD86376.1 - 4.1e-36 123.7 0.0 6e-36 123.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF835) PMT_2 PF13231.6 BAD86377.1 - 9.4e-13 48.7 15.1 9.4e-13 48.7 15.1 3.1 4 0 0 4 4 4 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Peptidase_M48_N PF16491.5 BAD86378.1 - 0.06 13.2 0.1 0.12 12.3 0.1 1.5 1 0 0 1 1 1 0 CAAX prenyl protease N-terminal, five membrane helices NicO PF03824.16 BAD86378.1 - 0.11 11.8 2.9 0.18 11.1 2.9 1.3 1 0 0 1 1 1 0 High-affinity nickel-transport protein HTH_5 PF01022.20 BAD86379.1 - 4e-10 39.4 0.0 6.1e-10 38.8 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 BAD86379.1 - 1.9e-08 34.2 0.1 2.8e-08 33.7 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 BAD86379.1 - 1.8e-06 27.7 0.1 2.5e-06 27.3 0.1 1.2 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 BAD86379.1 - 5.3e-06 25.9 0.1 8.7e-06 25.2 0.1 1.4 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 BAD86379.1 - 9.8e-05 22.2 0.0 0.00014 21.7 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 BAD86379.1 - 0.0002 21.2 0.0 0.0003 20.6 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 BAD86379.1 - 0.0003 20.7 0.1 0.00055 19.8 0.1 1.5 1 0 0 1 1 1 1 HTH domain HTH_45 PF14947.6 BAD86379.1 - 0.00035 20.5 0.1 0.00052 19.9 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_28 PF13518.6 BAD86379.1 - 0.00038 20.5 0.3 0.00052 20.1 0.3 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.6 BAD86379.1 - 0.00067 19.6 0.1 0.00085 19.3 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn helix Rrf2 PF02082.20 BAD86379.1 - 0.00082 19.7 0.0 0.0011 19.3 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_IclR PF09339.10 BAD86379.1 - 0.001 18.8 0.2 0.0014 18.3 0.2 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_30 PF13556.6 BAD86379.1 - 0.0013 18.5 0.4 0.0021 17.8 0.4 1.3 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain RP-C PF03428.13 BAD86379.1 - 0.0024 17.5 0.1 0.0031 17.2 0.1 1.2 1 0 0 1 1 1 1 Replication protein C N-terminal domain HTH_12 PF08461.10 BAD86379.1 - 0.0025 17.7 0.2 0.0044 16.9 0.2 1.5 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_27 PF13463.6 BAD86379.1 - 0.0036 17.7 0.0 0.0048 17.4 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 BAD86379.1 - 0.004 17.1 0.1 0.0048 16.8 0.1 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_50 PF18024.1 BAD86379.1 - 0.0043 16.6 0.1 0.0079 15.8 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain GntR PF00392.21 BAD86379.1 - 0.0088 15.7 0.0 0.018 14.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family FaeA PF04703.12 BAD86379.1 - 0.0089 16.4 0.1 0.013 15.9 0.1 1.3 1 0 0 1 1 1 1 FaeA-like protein DUF2089 PF09862.9 BAD86379.1 - 0.016 15.3 0.0 0.018 15.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2089) HTH_10 PF04967.12 BAD86379.1 - 0.018 14.9 0.0 0.026 14.3 0.0 1.2 1 0 0 1 1 1 0 HTH DNA binding domain HTH_23 PF13384.6 BAD86379.1 - 0.025 14.4 0.1 0.042 13.6 0.1 1.4 1 0 0 1 1 1 0 Homeodomain-like domain DUF4423 PF14394.6 BAD86379.1 - 0.025 14.3 0.0 0.033 13.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_8 PF02954.19 BAD86379.1 - 0.027 14.2 0.6 0.043 13.6 0.6 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_38 PF13936.6 BAD86379.1 - 0.033 14.0 0.1 0.051 13.3 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain LexA_DNA_bind PF01726.16 BAD86379.1 - 0.036 13.9 0.0 0.053 13.3 0.0 1.2 1 0 0 1 1 1 0 LexA DNA binding domain HTH_AsnC-type PF13404.6 BAD86379.1 - 0.067 13.0 0.2 0.5 10.2 0.2 2.3 1 1 1 2 2 2 0 AsnC-type helix-turn-helix domain Penicillinase_R PF03965.16 BAD86379.1 - 0.088 13.2 0.0 0.11 12.9 0.0 1.2 1 0 0 1 1 1 0 Penicillinase repressor DUF2513 PF10711.9 BAD86379.1 - 0.1 12.9 0.0 0.18 12.1 0.0 1.6 1 1 0 1 1 1 0 Hypothetical protein (DUF2513) HTH_35 PF13693.6 BAD86379.1 - 0.12 12.5 0.1 0.22 11.6 0.0 1.4 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding Phage_rep_org_N PF09681.10 BAD86379.1 - 0.14 12.1 0.0 0.15 12.0 0.0 1.1 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) PASTA PF03793.19 BAD86379.1 - 0.16 11.9 0.0 0.24 11.3 0.0 1.2 1 0 0 1 1 1 0 PASTA domain DUF523 PF04463.12 BAD86380.1 - 0.00018 21.6 0.0 0.00022 21.3 0.0 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF523) AAA_18 PF13238.6 BAD86381.1 - 3.4e-19 69.7 0.2 5.6e-19 69.0 0.1 1.4 1 1 0 1 1 1 1 AAA domain CoaE PF01121.20 BAD86381.1 - 2.3e-05 24.1 0.6 0.0028 17.4 0.0 2.3 2 0 0 2 2 2 2 Dephospho-CoA kinase AAA_17 PF13207.6 BAD86381.1 - 4.8e-05 23.8 0.4 0.00017 22.0 0.4 1.9 1 1 0 1 1 1 1 AAA domain dNK PF01712.19 BAD86381.1 - 5.3e-05 23.2 2.7 0.11 12.3 0.0 2.2 2 0 0 2 2 2 2 Deoxynucleoside kinase AAA_33 PF13671.6 BAD86381.1 - 0.0001 22.5 0.1 0.00036 20.7 0.1 1.9 1 1 0 1 1 1 1 AAA domain SKI PF01202.22 BAD86381.1 - 0.0017 18.5 1.2 0.026 14.7 0.8 2.1 2 0 0 2 2 2 1 Shikimate kinase DUF2709 PF10915.8 BAD86381.1 - 0.013 14.7 0.2 0.022 14.0 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2709) Thymidylate_kin PF02223.17 BAD86381.1 - 0.073 12.7 1.6 0.23 11.1 0.5 2.1 2 0 0 2 2 2 0 Thymidylate kinase AAA_24 PF13479.6 BAD86381.1 - 0.12 12.1 1.1 0.92 9.2 0.1 2.3 1 1 1 2 2 2 0 AAA domain AAA_23 PF13476.6 BAD86381.1 - 0.76 10.2 4.9 0.83 10.1 0.7 2.1 2 0 0 2 2 2 0 AAA domain ECF_trnsprt PF12822.7 BAD86383.1 - 6e-07 29.7 20.4 7.1e-07 29.5 20.4 1.1 1 0 0 1 1 1 1 ECF transporter, substrate-specific component DUF2232 PF09991.9 BAD86383.1 - 0.0048 16.1 14.2 0.37 9.9 12.6 2.3 2 0 0 2 2 2 2 Predicted membrane protein (DUF2232) DUF5083 PF16890.5 BAD86383.1 - 0.091 12.5 0.4 0.22 11.2 0.4 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF5083) PyrI PF01948.18 BAD86384.1 - 7e-33 112.7 0.7 9.6e-33 112.3 0.7 1.2 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.15 BAD86384.1 - 2.9e-22 78.3 3.1 5.1e-22 77.5 3.1 1.4 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain PriA_CRR PF18319.1 BAD86384.1 - 0.015 15.3 0.3 0.031 14.3 0.3 1.5 1 0 0 1 1 1 0 PriA DNA helicase Cys-rich region (CRR) domain Saf_2TM PF18303.1 BAD86384.1 - 0.13 11.9 0.1 0.21 11.2 0.1 1.4 1 1 0 1 1 1 0 SAVED-fused 2TM effector domain OTCace_N PF02729.21 BAD86385.1 - 3.4e-50 169.9 0.0 5.1e-50 169.4 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 BAD86385.1 - 1.4e-30 106.4 0.0 2.2e-30 105.8 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ThiP_synth PF10120.9 BAD86386.1 - 3.4e-46 156.9 0.0 4.9e-46 156.3 0.0 1.2 1 0 0 1 1 1 1 Thiamine-phosphate synthase HTH_3 PF01381.22 BAD86386.1 - 3.8e-05 23.6 0.1 0.00021 21.3 0.1 2.2 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.6 BAD86386.1 - 0.00044 20.5 0.0 0.0011 19.3 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 BAD86386.1 - 0.0015 18.5 0.1 0.006 16.6 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_38 PF13936.6 BAD86386.1 - 0.0038 17.0 1.6 0.055 13.2 0.0 2.9 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 BAD86386.1 - 0.0063 16.5 0.0 0.19 11.7 0.0 2.7 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain YdaS_antitoxin PF15943.5 BAD86386.1 - 0.016 15.1 0.0 0.091 12.6 0.0 2.2 2 0 0 2 2 2 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_37 PF13744.6 BAD86386.1 - 0.017 15.1 0.0 0.038 13.9 0.0 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain Terminase_5 PF06056.12 BAD86386.1 - 0.021 14.7 0.1 0.046 13.6 0.1 1.5 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) RepB PF07506.11 BAD86386.1 - 0.048 13.7 0.0 0.091 12.8 0.0 1.5 1 0 0 1 1 1 0 RepB plasmid partitioning protein HTH_23 PF13384.6 BAD86386.1 - 0.083 12.7 0.0 0.23 11.3 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain Peptidase_M16_C PF05193.21 BAD86386.1 - 0.17 11.9 0.1 0.73 9.8 0.0 2.0 2 0 0 2 2 2 0 Peptidase M16 inactive domain UPF0047 PF01894.17 BAD86387.1 - 8e-37 125.9 0.0 9.3e-37 125.7 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 PelG PF16933.5 BAD86388.1 - 0.17 10.7 0.0 0.24 10.2 0.0 1.1 1 0 0 1 1 1 0 Putative exopolysaccharide Exporter (EPS-E) LolA PF03548.15 BAD86388.1 - 0.18 11.5 0.0 0.27 10.9 0.0 1.2 1 0 0 1 1 1 0 Outer membrane lipoprotein carrier protein LolA cobW PF02492.19 BAD86389.1 - 7.2e-06 25.7 0.0 1.5e-05 24.6 0.0 1.6 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain PTS_IIB PF02302.17 BAD86389.1 - 9.7e-05 23.0 2.7 1.2 9.9 0.0 4.0 4 1 1 5 5 4 2 PTS system, Lactose/Cellobiose specific IIB subunit CbiA PF01656.23 BAD86389.1 - 0.01 15.9 0.9 0.036 14.1 0.7 2.2 2 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain B12-binding PF02310.19 BAD86389.1 - 0.01 15.9 0.2 2.2 8.3 0.0 3.5 4 0 0 4 4 4 0 B12 binding domain PPK2 PF03976.14 BAD86389.1 - 0.022 14.3 0.3 0.066 12.7 0.1 1.9 2 1 1 3 3 3 0 Polyphosphate kinase 2 (PPK2) Glyco_tran_WecB PF03808.13 BAD86389.1 - 0.034 14.1 0.0 0.94 9.4 0.0 2.8 2 1 1 3 3 3 0 Glycosyl transferase WecB/TagA/CpsF family SWI2_SNF2 PF18766.1 BAD86389.1 - 0.036 13.7 0.0 0.081 12.6 0.0 1.6 1 0 0 1 1 1 0 SWI2/SNF2 ATPase Thymidylate_kin PF02223.17 BAD86389.1 - 0.064 12.9 0.1 0.16 11.7 0.0 1.7 2 0 0 2 2 2 0 Thymidylate kinase AAA_31 PF13614.6 BAD86389.1 - 0.08 12.8 0.5 0.24 11.3 0.1 2.0 2 0 0 2 2 2 0 AAA domain UPF0180 PF03698.13 BAD86389.1 - 0.087 13.0 0.1 3.3 8.0 0.0 3.3 4 0 0 4 4 4 0 Uncharacterised protein family (UPF0180) Zeta_toxin PF06414.12 BAD86389.1 - 0.091 12.0 0.1 0.17 11.1 0.1 1.4 1 0 0 1 1 1 0 Zeta toxin MipZ PF09140.11 BAD86389.1 - 0.11 11.8 0.0 0.28 10.4 0.0 1.7 2 0 0 2 2 2 0 ATPase MipZ GTP-bdg_N PF13167.6 BAD86389.1 - 0.12 13.1 0.1 1.9 9.2 0.0 2.7 3 0 0 3 3 2 0 GTP-binding GTPase N-terminal DUF2325 PF10087.9 BAD86389.1 - 0.13 12.4 0.2 4.5 7.5 0.0 3.0 3 0 0 3 3 2 0 Uncharacterized protein conserved in bacteria (DUF2325) AAA_5 PF07728.14 BAD86389.1 - 0.14 12.1 0.0 1.5 8.8 0.0 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) ParA PF10609.9 BAD86389.1 - 0.16 11.4 0.3 0.27 10.6 0.3 1.3 1 0 0 1 1 1 0 NUBPL iron-transfer P-loop NTPase DUF2179 PF10035.9 BAD86389.1 - 0.35 10.7 4.1 6.9 6.5 0.1 3.4 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2179) AAA_14 PF13173.6 BAD86391.1 - 6.5e-31 107.1 0.0 1.4e-30 106.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain DUF4143 PF13635.6 BAD86391.1 - 1.8e-10 41.0 0.1 3.1e-10 40.3 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) ATPase_2 PF01637.18 BAD86391.1 - 0.00078 19.4 0.0 0.0032 17.4 0.0 2.0 1 1 1 2 2 2 1 ATPase domain predominantly from Archaea AAA_24 PF13479.6 BAD86391.1 - 0.14 11.9 0.0 0.81 9.4 0.0 1.9 2 0 0 2 2 2 0 AAA domain Glyco_hyd_65N_2 PF14498.6 BAD86391.1 - 0.17 11.7 0.0 0.27 11.0 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 65, N-terminal domain LigB PF02900.18 BAD86392.1 - 5.2e-11 42.1 0.0 6.2e-11 41.9 0.0 1.0 1 0 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase PALP PF00291.25 BAD86394.1 - 2.1e-73 247.3 0.1 2.5e-73 247.1 0.1 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme F420_oxidored PF03807.17 BAD86394.1 - 0.033 14.8 0.2 0.11 13.1 0.2 1.9 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent NmrA PF05368.13 BAD86394.1 - 0.053 13.1 0.1 0.1 12.1 0.1 1.4 1 0 0 1 1 1 0 NmrA-like family DUF4157 PF13699.6 BAD86395.1 - 5.4e-05 23.4 0.0 0.0001 22.5 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4157) Proteasome PF00227.26 BAD86396.1 - 3.5e-52 176.7 0.1 4e-52 176.5 0.1 1.0 1 0 0 1 1 1 1 Proteasome subunit ABC_tran PF00005.27 BAD86397.1 - 1.3e-26 93.7 0.0 1.9e-26 93.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 BAD86397.1 - 1.8e-09 37.8 2.6 7.4e-05 22.7 0.3 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 BAD86397.1 - 2.2e-08 33.8 0.2 0.003 17.0 0.0 2.1 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 BAD86397.1 - 5.9e-05 22.7 0.0 0.00011 21.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 BAD86397.1 - 0.00016 22.2 0.0 0.00023 21.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain ABC_ATPase PF09818.9 BAD86397.1 - 0.00051 19.0 0.3 0.19 10.5 0.0 2.4 2 1 0 2 2 2 2 Predicted ATPase of the ABC class AAA_15 PF13175.6 BAD86397.1 - 0.00055 19.8 0.0 0.00071 19.4 0.0 1.1 1 0 0 1 1 1 1 AAA ATPase domain Mg_chelatase PF01078.21 BAD86397.1 - 0.00064 19.2 0.0 0.001 18.5 0.0 1.3 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_22 PF13401.6 BAD86397.1 - 0.00098 19.4 0.1 0.0026 18.0 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 BAD86397.1 - 0.0019 18.4 0.2 0.011 16.0 0.2 2.2 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 BAD86397.1 - 0.0032 17.4 0.0 0.0072 16.2 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase SbcCD_C PF13558.6 BAD86397.1 - 0.0039 17.4 0.0 0.035 14.3 0.0 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.6 BAD86397.1 - 0.0039 16.9 0.0 0.0062 16.3 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.6 BAD86397.1 - 0.0053 17.1 0.1 0.01 16.2 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_27 PF13514.6 BAD86397.1 - 0.0079 15.8 0.0 0.014 15.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.23 BAD86397.1 - 0.0094 16.0 0.0 0.021 14.9 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase Rad17 PF03215.15 BAD86397.1 - 0.01 15.8 0.0 0.016 15.1 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_16 PF13191.6 BAD86397.1 - 0.01 16.2 0.6 0.022 15.2 0.6 1.8 1 1 0 1 1 1 0 AAA ATPase domain GTP_EFTU PF00009.27 BAD86397.1 - 0.03 13.9 0.0 0.05 13.1 0.0 1.3 1 0 0 1 1 1 0 Elongation factor Tu GTP binding domain NACHT PF05729.12 BAD86397.1 - 0.036 14.0 0.2 0.081 12.8 0.2 1.5 1 0 0 1 1 1 0 NACHT domain Dynamin_N PF00350.23 BAD86397.1 - 0.054 13.5 0.1 0.11 12.6 0.0 1.5 2 0 0 2 2 2 0 Dynamin family NTPase_1 PF03266.15 BAD86397.1 - 0.061 13.2 0.2 1.5 8.7 0.0 2.4 2 0 0 2 2 2 0 NTPase AAA_14 PF13173.6 BAD86397.1 - 0.083 12.9 0.0 0.24 11.4 0.0 1.8 2 0 0 2 2 2 0 AAA domain MeaB PF03308.16 BAD86397.1 - 0.099 11.6 0.0 0.18 10.8 0.0 1.4 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA PF00004.29 BAD86397.1 - 0.11 12.9 0.0 0.25 11.8 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ATP_bind_1 PF03029.17 BAD86397.1 - 0.17 11.7 0.0 0.33 10.7 0.0 1.5 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_24 PF13479.6 BAD86397.1 - 0.19 11.5 0.0 0.28 10.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain PIF1 PF05970.14 BAD86397.1 - 0.21 10.7 0.0 0.32 10.1 0.0 1.2 1 0 0 1 1 1 0 PIF1-like helicase AAA_13 PF13166.6 BAD86397.1 - 0.23 10.1 0.0 12 4.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain FecCD PF01032.18 BAD86398.1 - 1.2e-82 277.4 25.3 1.5e-82 277.1 25.3 1.0 1 0 0 1 1 1 1 FecCD transport family NurA PF09376.10 BAD86399.1 - 2.2e-76 256.7 2.5 2.9e-76 256.4 2.5 1.2 1 0 0 1 1 1 1 NurA domain PqqD PF05402.12 BAD86399.1 - 0.02 15.2 0.7 0.33 11.3 0.1 2.5 2 0 0 2 2 2 0 Coenzyme PQQ synthesis protein D (PqqD) TetR_C_24 PF17932.1 BAD86399.1 - 0.13 12.5 0.0 0.74 10.1 0.0 2.3 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain Rad50_zn_hook PF04423.14 BAD86400.1 - 2.3e-15 56.1 2.5 2.3e-15 56.1 2.5 10.5 11 2 1 12 12 10 1 Rad50 zinc hook motif SMC_N PF02463.19 BAD86400.1 - 7.2e-13 48.5 39.6 5.6e-10 39.0 0.2 2.5 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 BAD86400.1 - 2.7e-11 43.8 69.0 2.6e-05 24.1 4.8 4.3 1 1 1 2 2 2 2 AAA ATPase domain Spc7 PF08317.11 BAD86400.1 - 2.9e-11 42.8 122.9 0.0015 17.4 26.6 4.4 2 2 1 4 4 4 4 Spc7 kinetochore protein AAA_13 PF13166.6 BAD86400.1 - 1.4e-10 40.5 91.4 0.0024 16.6 28.2 5.4 2 1 2 4 4 4 4 AAA domain AAA_21 PF13304.6 BAD86400.1 - 6.9e-09 35.9 28.2 1e-05 25.5 0.2 4.1 2 1 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system NPV_P10 PF05531.12 BAD86400.1 - 2.1e-08 34.5 21.9 0.039 14.4 0.1 8.4 3 3 4 7 7 7 1 Nucleopolyhedrovirus P10 protein AAA_23 PF13476.6 BAD86400.1 - 5.4e-08 33.6 155.1 4.8e-06 27.2 61.4 8.2 1 1 2 3 3 2 1 AAA domain ABC_tran PF00005.27 BAD86400.1 - 5.5e-07 30.2 11.3 0.014 15.9 3.8 5.4 1 1 0 2 2 2 2 ABC transporter AAA_29 PF13555.6 BAD86400.1 - 9.3e-07 28.5 0.0 1.7e-06 27.7 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain Baculo_PEP_C PF04513.12 BAD86400.1 - 1.6e-06 28.2 16.3 0.7 9.9 0.0 6.2 3 2 3 6 6 6 2 Baculovirus polyhedron envelope protein, PEP, C terminus DUF3584 PF12128.8 BAD86400.1 - 8.7e-06 23.6 27.2 8.7e-06 23.6 27.2 3.4 3 1 1 4 4 4 2 Protein of unknown function (DUF3584) GAS PF13851.6 BAD86400.1 - 0.00032 20.1 130.5 0.0091 15.4 6.2 7.6 1 1 6 8 8 8 4 Growth-arrest specific micro-tubule binding SbcCD_C PF13558.6 BAD86400.1 - 0.00077 19.6 0.0 0.002 18.3 0.0 1.7 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit MAP65_ASE1 PF03999.12 BAD86400.1 - 0.0013 17.6 34.2 0.0013 17.6 34.2 3.4 2 2 1 3 3 3 1 Microtubule associated protein (MAP65/ASE1 family) DUF1664 PF07889.12 BAD86400.1 - 0.002 18.1 62.7 0.013 15.5 0.2 8.3 2 2 3 7 7 7 2 Protein of unknown function (DUF1664) Snapin_Pallidin PF14712.6 BAD86400.1 - 0.0051 17.2 81.2 0.015 15.7 9.4 8.4 2 2 7 9 9 9 5 Snapin/Pallidin TMF_TATA_bd PF12325.8 BAD86400.1 - 0.0083 16.3 15.9 0.0083 16.3 15.9 7.3 2 2 4 6 6 6 2 TATA element modulatory factor 1 TATA binding Syntaxin-6_N PF09177.11 BAD86400.1 - 0.0091 16.5 73.1 0.13 12.9 12.9 8.2 2 2 5 7 7 7 3 Syntaxin 6, N-terminal Spectrin PF00435.21 BAD86400.1 - 0.015 15.8 8.5 0.015 15.8 8.5 7.9 2 2 5 8 8 8 0 Spectrin repeat FtsK_SpoIIIE PF01580.18 BAD86400.1 - 0.018 14.4 0.0 0.018 14.4 0.0 3.5 4 1 0 4 4 3 0 FtsK/SpoIIIE family ORF11CD3 PF10549.9 BAD86400.1 - 0.019 15.1 0.1 0.019 15.1 0.1 4.9 5 0 0 5 5 3 0 ORF11CD3 domain APG17 PF04108.12 BAD86400.1 - 0.026 13.6 68.8 0.014 14.6 9.8 6.2 1 1 2 4 4 4 0 Autophagy protein Apg17 Fib_alpha PF08702.10 BAD86400.1 - 0.029 14.6 59.4 0.067 13.4 7.2 6.3 3 3 2 6 6 6 0 Fibrinogen alpha/beta chain family DUF4407 PF14362.6 BAD86400.1 - 0.051 12.9 70.4 0.084 12.2 5.4 4.6 2 2 1 4 4 4 0 Domain of unknown function (DUF4407) Laminin_II PF06009.12 BAD86400.1 - 0.091 12.8 70.4 0.3 11.1 8.0 7.5 2 2 5 7 7 7 0 Laminin Domain II DUF4201 PF13870.6 BAD86400.1 - 0.26 11.0 126.1 0.16 11.7 8.7 7.9 1 1 5 6 6 5 0 Domain of unknown function (DUF4201) MCPsignal PF00015.21 BAD86400.1 - 0.75 9.6 22.0 16 5.3 0.7 6.3 3 3 4 8 8 8 0 Methyl-accepting chemotaxis protein (MCP) signalling domain DASH_Dam1 PF08653.10 BAD86400.1 - 1.1 9.1 15.8 30 4.5 0.0 7.8 8 2 1 9 9 7 0 DASH complex subunit Dam1 AAA_16 PF13191.6 BAD86400.1 - 1.4 9.2 0.0 1.4 9.2 0.0 5.2 2 1 0 3 3 2 0 AAA ATPase domain BLOC1_2 PF10046.9 BAD86400.1 - 1.5 9.2 87.1 0.17 12.2 2.4 10.2 3 3 7 10 10 10 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Seryl_tRNA_N PF02403.22 BAD86400.1 - 1.6 9.0 125.3 0.21 11.8 1.8 8.1 2 2 5 7 7 7 0 Seryl-tRNA synthetase N-terminal domain DehI PF10778.9 BAD86400.1 - 3.1 7.9 9.8 0.12 12.5 1.1 3.1 3 0 0 3 3 2 0 Halocarboxylic acid dehydrogenase DehI EzrA PF06160.12 BAD86400.1 - 3.4 5.7 111.3 0.4 8.8 29.5 6.7 1 1 3 6 6 4 0 Septation ring formation regulator, EzrA FlaC_arch PF05377.11 BAD86400.1 - 4.9 7.6 86.2 0.51 10.8 0.2 11.7 5 4 6 12 12 12 0 Flagella accessory protein C (FlaC) Sec34 PF04136.15 BAD86400.1 - 7.5 6.4 55.5 0.21 11.5 5.3 8.6 2 2 7 9 9 9 0 Sec34-like family Fez1 PF06818.15 BAD86400.1 - 7.7 6.9 106.6 0.23 11.9 15.4 5.6 1 1 4 5 5 4 0 Fez1 FUSC PF04632.12 BAD86400.1 - 8.8 4.7 33.1 1.6 7.2 6.2 4.3 1 1 4 5 5 5 0 Fusaric acid resistance protein family Metallophos PF00149.28 BAD86401.1 - 1.5e-15 58.2 0.0 2.4e-15 57.6 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 BAD86401.1 - 1.9e-15 57.5 0.0 6.7e-15 55.7 0.0 1.9 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain DUF5327 PF17261.2 BAD86401.1 - 0.031 15.0 0.4 0.19 12.5 0.5 2.2 2 0 0 2 2 2 0 Family of unknown function (DUF5327) DUF87 PF01935.17 BAD86402.1 - 3.8e-54 184.2 0.0 7e-54 183.3 0.0 1.5 1 0 0 1 1 1 1 Helicase HerA, central domain HAS-barrel PF09378.10 BAD86402.1 - 1.8e-23 82.5 0.1 8.5e-23 80.3 0.1 2.2 2 0 0 2 2 2 1 HAS barrel domain DUF853 PF05872.12 BAD86402.1 - 2.9e-08 32.8 0.0 0.0016 17.1 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) TrwB_AAD_bind PF10412.9 BAD86402.1 - 5.3e-06 25.6 0.0 0.00085 18.3 0.0 2.2 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain Acetyltransf_1 PF00583.25 BAD86403.1 - 1.6e-28 99.3 0.3 2.1e-28 98.9 0.3 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 BAD86403.1 - 7.8e-18 64.7 0.2 1.2e-17 64.1 0.2 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 BAD86403.1 - 3e-17 62.7 0.0 3.6e-17 62.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 BAD86403.1 - 2e-11 43.7 0.1 3.1e-11 43.1 0.1 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 BAD86403.1 - 6.2e-10 39.2 0.0 7e-06 26.1 0.0 2.2 2 0 0 2 2 2 2 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 BAD86403.1 - 7.9e-09 35.3 0.0 2.7e-08 33.6 0.0 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 BAD86403.1 - 2.1e-08 34.5 0.0 2.4e-08 34.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 BAD86403.1 - 6.7e-06 26.3 0.1 1.1e-05 25.6 0.1 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 BAD86403.1 - 1.5e-05 25.7 0.0 2e-05 25.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain GNAT_acetyltran PF12746.7 BAD86403.1 - 0.00011 21.9 0.0 0.00014 21.6 0.0 1.1 1 0 0 1 1 1 1 GNAT acetyltransferase Acetyltransf_CG PF14542.6 BAD86403.1 - 0.00021 21.3 0.0 0.00034 20.7 0.0 1.3 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_15 PF17013.5 BAD86403.1 - 0.02 14.4 0.0 0.029 13.8 0.0 1.5 1 1 0 1 1 1 0 Putative acetyl-transferase PanZ PF12568.8 BAD86403.1 - 0.05 13.3 0.0 0.065 13.0 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain, PanZ tRNA_int_endo PF01974.17 BAD86404.1 - 2.5e-33 114.0 0.2 3.6e-33 113.5 0.2 1.2 1 0 0 1 1 1 1 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.14 BAD86404.1 - 2.8e-21 75.0 0.6 2.8e-21 75.0 0.6 1.7 2 0 0 2 2 2 1 tRNA intron endonuclease, N-terminal domain tRNA_int_end_N2 PF12928.7 BAD86404.1 - 0.0011 19.1 0.0 0.0042 17.2 0.0 2.0 2 0 0 2 2 2 1 tRNA-splicing endonuclease subunit sen54 N-term Sen15 PF09631.10 BAD86404.1 - 0.017 15.4 0.0 0.029 14.6 0.0 1.5 1 1 0 1 1 1 0 Sen15 protein DUF835 PF05763.12 BAD86405.1 - 3.5e-40 136.9 0.0 4.5e-40 136.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF835) Aminotran_1_2 PF00155.21 BAD86406.1 - 8.8e-70 235.7 0.0 1e-69 235.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 BAD86406.1 - 6.5e-05 21.6 0.0 9.9e-05 21.0 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 BAD86406.1 - 0.00023 20.5 0.0 0.00038 19.8 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 BAD86406.1 - 0.00049 19.2 0.0 0.00091 18.3 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 BAD86406.1 - 0.036 13.4 0.0 0.22 10.8 0.0 2.0 2 0 0 2 2 2 0 DegT/DnrJ/EryC1/StrS aminotransferase family LAGLIDADG_3 PF14528.6 BAD86407.1 - 7.7e-32 109.5 0.0 1.5e-20 73.3 0.1 2.9 2 0 0 2 2 2 2 LAGLIDADG-like domain Intein_splicing PF14890.6 BAD86407.1 - 1.4e-22 80.1 0.1 3.2e-22 78.9 0.1 1.6 1 0 0 1 1 1 1 Intein splicing domain Rep_fac_C PF08542.11 BAD86407.1 - 2.8e-21 75.7 0.1 7.8e-21 74.3 0.1 1.8 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA PF00004.29 BAD86407.1 - 8.1e-13 49.0 0.6 9.9e-10 39.0 0.1 2.9 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.6 BAD86407.1 - 2e-12 47.2 0.1 1.1e-10 41.5 0.1 2.5 2 0 0 2 2 2 1 DNA polymerase III, delta subunit HTH_3 PF01381.22 BAD86407.1 - 1.3e-07 31.6 0.1 4e-07 30.0 0.1 1.9 1 0 0 1 1 1 1 Helix-turn-helix RuvB_N PF05496.12 BAD86407.1 - 1.5e-06 28.1 0.3 6.2e-05 22.8 0.0 3.1 3 0 0 3 3 3 1 Holliday junction DNA helicase RuvB P-loop domain HTH_19 PF12844.7 BAD86407.1 - 6.6e-05 22.9 0.5 0.0003 20.7 0.2 2.3 2 0 0 2 2 1 1 Helix-turn-helix domain AAA_assoc_2 PF16193.5 BAD86407.1 - 0.0001 22.5 0.2 0.00036 20.8 0.2 2.0 1 0 0 1 1 1 1 AAA C-terminal domain DNA_pol3_delta PF06144.13 BAD86407.1 - 0.00013 21.8 0.0 0.00036 20.4 0.0 1.7 1 0 0 1 1 1 1 DNA polymerase III, delta subunit DUF4364 PF14277.6 BAD86407.1 - 0.0004 20.2 0.0 0.0014 18.4 0.0 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) Rad17 PF03215.15 BAD86407.1 - 0.00053 20.0 0.0 0.0014 18.6 0.0 1.6 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_16 PF13191.6 BAD86407.1 - 0.00079 19.8 0.0 0.37 11.1 0.0 2.6 2 0 0 2 2 2 1 AAA ATPase domain Mg_chelatase PF01078.21 BAD86407.1 - 0.0042 16.5 0.0 0.85 9.0 0.0 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI Inhibitor_I29 PF08246.12 BAD86407.1 - 0.017 15.6 0.2 0.48 10.9 0.0 2.7 2 0 0 2 2 2 0 Cathepsin propeptide inhibitor domain (I29) LAGLIDADG_WhiA PF14527.6 BAD86407.1 - 0.019 15.1 0.3 0.18 11.9 0.0 2.8 3 0 0 3 3 2 0 WhiA LAGLIDADG-like domain AAA_22 PF13401.6 BAD86407.1 - 0.21 11.9 0.5 5 7.4 0.0 3.1 3 0 0 3 3 3 0 AAA domain TPR_14 PF13428.6 BAD86407.1 - 0.24 12.3 2.0 1.8 9.6 0.1 3.1 3 0 0 3 3 2 0 Tetratricopeptide repeat AAA PF00004.29 BAD86408.1 - 2.9e-16 60.1 0.0 1.4e-15 57.9 0.0 2.2 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 BAD86408.1 - 1.5e-13 51.1 0.0 8.1e-13 48.7 0.0 2.1 2 1 0 2 2 2 1 Rad17 P-loop domain AAA_14 PF13173.6 BAD86408.1 - 1.5e-08 34.7 0.0 5.1e-08 33.0 0.0 1.9 1 0 0 1 1 1 1 AAA domain RuvB_N PF05496.12 BAD86408.1 - 2e-07 30.9 0.0 4.1e-07 29.9 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 BAD86408.1 - 1.3e-06 28.7 0.5 0.00099 19.4 0.1 3.6 2 1 1 3 3 2 1 AAA domain AAA_5 PF07728.14 BAD86408.1 - 5.7e-06 26.4 0.0 4.5e-05 23.5 0.0 2.5 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) DUF815 PF05673.13 BAD86408.1 - 1.1e-05 24.8 0.0 0.00037 19.8 0.0 2.5 2 0 0 2 2 2 1 Protein of unknown function (DUF815) AAA_16 PF13191.6 BAD86408.1 - 3.6e-05 24.2 0.3 3.6e-05 24.2 0.3 3.2 2 2 0 2 2 1 1 AAA ATPase domain AAA_11 PF13086.6 BAD86408.1 - 0.00028 20.7 4.0 0.05 13.4 0.0 2.4 2 0 0 2 2 2 1 AAA domain DNA_pol3_delta PF06144.13 BAD86408.1 - 0.00044 20.1 2.1 0.00094 19.0 0.1 2.7 3 1 0 3 3 1 1 DNA polymerase III, delta subunit AAA_17 PF13207.6 BAD86408.1 - 0.0011 19.5 0.0 0.0011 19.5 0.0 3.1 2 2 1 3 3 2 1 AAA domain AAA_6 PF12774.7 BAD86408.1 - 0.0016 17.5 0.1 0.0044 16.0 0.0 1.7 2 0 0 2 2 2 1 Hydrolytic ATP binding site of dynein motor region Zeta_toxin PF06414.12 BAD86408.1 - 0.0017 17.7 0.0 0.0062 15.8 0.0 1.9 2 0 0 2 2 2 1 Zeta toxin AAA_18 PF13238.6 BAD86408.1 - 0.0029 18.2 2.5 0.0031 18.0 0.0 2.4 2 1 0 2 2 1 1 AAA domain AAA_24 PF13479.6 BAD86408.1 - 0.0033 17.2 0.1 0.011 15.4 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 BAD86408.1 - 0.0039 16.9 0.0 0.01 15.6 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 BAD86408.1 - 0.005 17.0 0.0 0.015 15.5 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 BAD86408.1 - 0.0063 16.1 2.8 0.0063 16.1 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_7 PF12775.7 BAD86408.1 - 0.013 15.1 0.0 0.029 13.9 0.0 1.6 1 0 0 1 1 1 0 P-loop containing dynein motor region T2SSE PF00437.20 BAD86408.1 - 0.013 14.6 0.0 0.038 13.0 0.0 1.8 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_28 PF13521.6 BAD86408.1 - 0.014 15.6 0.0 0.014 15.6 0.0 2.7 3 0 0 3 3 3 0 AAA domain TsaE PF02367.17 BAD86408.1 - 0.027 14.5 0.0 0.068 13.2 0.0 1.7 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_assoc_2 PF16193.5 BAD86408.1 - 0.039 14.3 0.1 0.039 14.3 0.1 2.2 2 0 0 2 2 1 0 AAA C-terminal domain ResIII PF04851.15 BAD86408.1 - 0.052 13.5 2.6 0.19 11.7 0.0 2.7 2 2 1 3 3 2 0 Type III restriction enzyme, res subunit IstB_IS21 PF01695.17 BAD86408.1 - 0.056 13.2 0.0 0.18 11.5 0.0 1.9 1 0 0 1 1 1 0 IstB-like ATP binding protein RNA_helicase PF00910.22 BAD86408.1 - 0.071 13.5 0.0 0.28 11.6 0.0 2.1 2 0 0 2 2 2 0 RNA helicase HrcA_DNA-bdg PF03444.15 BAD86408.1 - 0.11 12.1 0.1 0.48 10.1 0.1 2.1 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding RsgA_GTPase PF03193.16 BAD86408.1 - 0.12 12.2 0.0 0.38 10.6 0.0 1.9 1 0 0 1 1 1 0 RsgA GTPase MMR_HSR1 PF01926.23 BAD86408.1 - 0.14 12.3 0.0 0.6 10.2 0.0 2.1 1 1 0 1 1 1 0 50S ribosome-binding GTPase ABC_tran PF00005.27 BAD86408.1 - 0.14 12.7 1.7 1.7 9.1 0.0 2.9 2 1 1 3 3 3 0 ABC transporter AAA_19 PF13245.6 BAD86408.1 - 0.16 12.3 4.1 0.3 11.4 0.2 2.9 3 1 1 4 4 4 0 AAA domain Hydin_ADK PF17213.3 BAD86408.1 - 3 8.1 8.4 3.6 7.8 0.0 2.3 2 0 0 2 2 2 0 Hydin Adenylate kinase-like domain AAA_14 PF13173.6 BAD86409.1 - 1e-32 112.9 0.0 1.7e-32 112.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain DUF4143 PF13635.6 BAD86409.1 - 2.3e-13 50.4 0.0 3.6e-13 49.7 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) AAA_22 PF13401.6 BAD86409.1 - 1.1e-06 28.9 0.0 1.6e-05 25.2 0.0 2.4 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 BAD86409.1 - 0.00011 22.6 0.1 0.027 14.9 0.1 2.8 1 1 1 2 2 2 1 AAA ATPase domain ATPase_2 PF01637.18 BAD86409.1 - 0.00084 19.3 0.0 0.39 10.6 0.0 2.7 1 1 1 2 2 2 2 ATPase domain predominantly from Archaea ATPase PF06745.13 BAD86409.1 - 0.026 13.9 0.0 0.077 12.3 0.0 1.6 1 1 0 1 1 1 0 KaiC AAA_24 PF13479.6 BAD86409.1 - 0.084 12.6 0.0 0.64 9.7 0.0 2.0 1 1 0 2 2 2 0 AAA domain Mrr_cat PF04471.12 BAD86409.1 - 0.13 12.3 0.0 0.4 10.7 0.0 1.8 1 0 0 1 1 1 0 Restriction endonuclease AAA_14 PF13173.6 BAD86411.1 - 0.00057 19.9 0.0 0.0011 19.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain Multi_ubiq PF14452.6 BAD86411.1 - 0.063 13.5 0.1 0.16 12.2 0.1 1.7 1 0 0 1 1 1 0 Multiubiquitin AAA_22 PF13401.6 BAD86411.1 - 0.075 13.3 0.0 8.3 6.7 0.0 2.5 1 1 1 2 2 2 0 AAA domain MEDS PF14417.6 BAD86411.1 - 0.15 11.9 0.0 0.37 10.6 0.0 1.7 1 0 0 1 1 1 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain Focadhesin PF11229.8 BAD86411.1 - 0.15 10.2 0.0 0.21 9.8 0.0 1.1 1 0 0 1 1 1 0 Focadhesin RHH_8 PF17723.1 BAD86411.1 - 0.16 12.1 0.0 0.29 11.3 0.0 1.3 1 0 0 1 1 1 0 Ribbon-Helix-Helix transcriptional regulator family Met_10 PF02475.16 BAD86412.1 - 2.2e-36 125.5 0.0 3e-36 125.1 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Trm5_N PF18093.1 BAD86412.1 - 5.5e-14 51.8 2.8 1.8e-13 50.2 1.8 2.5 2 0 0 2 2 2 1 tRNA methyltransferase 5 N-terminal domain Methyltransf_3 PF01596.17 BAD86412.1 - 0.006 15.8 0.0 0.012 14.8 0.0 1.4 1 0 0 1 1 1 1 O-methyltransferase TrmK PF04816.12 BAD86412.1 - 0.026 14.0 0.0 0.047 13.2 0.0 1.3 1 0 0 1 1 1 0 tRNA (adenine(22)-N(1))-methyltransferase Peptidase_C4 PF00863.19 BAD86412.1 - 0.068 12.5 0.0 0.091 12.0 0.0 1.2 1 0 0 1 1 1 0 Peptidase family C4 DUF835 PF05763.12 BAD86413.1 - 5.4e-39 133.0 0.1 7.2e-39 132.6 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF835) Lig_chan PF00060.26 BAD86413.1 - 0.16 11.8 0.0 0.57 10.0 0.0 1.9 1 1 1 2 2 2 0 Ligand-gated ion channel Radical_SAM PF04055.21 BAD86414.1 - 5.5e-34 118.0 1.1 1.2e-33 116.9 0.1 1.9 2 1 0 2 2 2 1 Radical SAM superfamily Mob_synth_C PF06463.13 BAD86414.1 - 2.2e-22 79.3 0.1 3.4e-22 78.7 0.1 1.3 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_12 PF13353.6 BAD86414.1 - 2e-10 41.1 0.0 4.6e-10 39.9 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 BAD86414.1 - 1.3e-06 28.6 0.0 2.7e-06 27.5 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain CMD PF02627.20 BAD86414.1 - 0.016 15.2 0.0 2.1 8.5 0.0 2.7 2 0 0 2 2 2 0 Carboxymuconolactone decarboxylase family DUF1400 PF07176.11 BAD86415.1 - 0.016 15.5 0.6 2.6 8.4 0.1 2.6 1 1 1 2 2 2 0 Alpha/beta hydrolase of unknown function (DUF1400) YqaJ PF09588.10 BAD86415.1 - 0.068 13.3 0.0 0.08 13.1 0.0 1.3 1 0 0 1 1 1 0 YqaJ-like viral recombinase domain DUF4208 PF13907.6 BAD86415.1 - 0.079 13.4 1.1 0.14 12.6 0.1 1.9 2 1 0 2 2 2 0 Domain of unknown function (DUF4208) FliH PF02108.16 BAD86415.1 - 0.14 12.3 0.5 0.35 10.9 0.2 1.8 1 1 1 2 2 2 0 Flagellar assembly protein FliH DUF402 PF04167.13 BAD86416.1 - 5e-15 55.5 2.9 5e-15 55.5 2.9 3.1 3 0 0 3 3 3 1 Protein of unknown function (DUF402) RNase_E_G PF10150.9 BAD86416.1 - 3.2e-11 43.2 0.0 5.6e-11 42.4 0.0 1.4 1 0 0 1 1 1 1 Ribonuclease E/G family S1 PF00575.23 BAD86416.1 - 0.0024 18.2 1.7 0.0071 16.7 0.1 2.5 2 0 0 2 2 2 1 S1 RNA binding domain OB_RNB PF08206.11 BAD86416.1 - 0.097 12.4 0.0 0.26 11.0 0.0 1.7 1 0 0 1 1 1 0 Ribonuclease B OB domain PIN PF01850.21 BAD86417.1 - 2.4e-17 63.6 0.3 2.7e-17 63.4 0.3 1.0 1 0 0 1 1 1 1 PIN domain PIN_9 PF18477.1 BAD86417.1 - 2.8e-07 30.8 0.0 2.8e-06 27.6 0.0 1.9 1 1 0 1 1 1 1 PIN like domain PIN_4 PF13638.6 BAD86417.1 - 0.00042 20.6 0.0 0.00064 20.0 0.0 1.3 1 0 0 1 1 1 1 PIN domain PIN_12 PF16289.5 BAD86417.1 - 0.038 14.5 0.2 0.079 13.5 0.2 1.6 1 1 0 1 1 1 0 PIN domain PIN_3 PF13470.6 BAD86417.1 - 0.066 14.0 0.1 0.086 13.6 0.1 1.6 1 1 0 1 1 1 0 PIN domain MazE_antitoxin PF04014.18 BAD86418.1 - 9.6e-14 50.9 0.6 1.4e-13 50.4 0.6 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin PrlF_antitoxin PF15937.5 BAD86418.1 - 4.2e-05 23.9 0.1 5.6e-05 23.5 0.1 1.2 1 0 0 1 1 1 1 prlF antitoxin for toxin YhaV_toxin DUF1905 PF08922.11 BAD86418.1 - 0.057 13.5 0.1 0.51 10.4 0.1 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF1905) Type_ISP_C PF18135.1 BAD86419.1 - 1.8e-05 23.9 0.1 1.9e-05 23.9 0.1 1.0 1 0 0 1 1 1 1 Type ISP C-terminal specificity domain Fur_reg_FbpA PF13076.6 BAD86419.1 - 0.019 14.6 0.4 0.03 14.0 0.0 1.6 2 0 0 2 2 2 0 Fur-regulated basic protein A Endonuc_subdom PF09062.10 BAD86419.1 - 0.063 14.1 0.1 0.064 14.1 0.1 1.1 1 0 0 1 1 1 0 PI-PfuI Endonuclease subdomain TFIIE_beta PF02186.15 BAD86419.1 - 0.096 13.0 0.4 0.12 12.6 0.4 1.1 1 0 0 1 1 1 0 TFIIE beta subunit core domain Rad51 PF08423.11 BAD86420.1 - 5.9e-30 104.4 0.0 8.5e-30 103.8 0.0 1.3 1 1 0 1 1 1 1 Rad51 ATPase PF06745.13 BAD86420.1 - 2.4e-10 40.2 0.0 4.2e-10 39.4 0.0 1.4 1 1 0 1 1 1 1 KaiC RecA PF00154.21 BAD86420.1 - 2.7e-10 40.2 0.0 4e-10 39.6 0.0 1.3 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_25 PF13481.6 BAD86420.1 - 5.6e-10 39.1 0.1 1.4e-09 37.8 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.6 BAD86420.1 - 3.5e-07 30.1 0.0 5.4e-07 29.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain DnaB_C PF03796.15 BAD86420.1 - 3.7e-07 29.7 0.8 0.00043 19.7 0.1 2.1 1 1 0 2 2 2 2 DnaB-like helicase C terminal domain PAXNEB PF05625.11 BAD86420.1 - 0.013 14.7 0.4 0.018 14.2 0.4 1.3 1 0 0 1 1 1 0 PAXNEB protein CobU PF02283.16 BAD86420.1 - 0.082 12.5 0.3 0.99 9.0 0.0 2.0 2 0 0 2 2 2 0 Cobinamide kinase / cobinamide phosphate guanyltransferase ATPase_2 PF01637.18 BAD86420.1 - 0.089 12.7 0.0 0.12 12.2 0.0 1.3 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea Isochorismatase PF00857.20 BAD86420.1 - 0.13 12.4 0.0 0.18 12.0 0.0 1.2 1 0 0 1 1 1 0 Isochorismatase family Lactamase_B_3 PF13483.6 BAD86421.1 - 1.7e-28 99.6 0.2 2.1e-28 99.3 0.2 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 BAD86421.1 - 2.6e-20 72.8 0.1 3.4e-20 72.4 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 BAD86421.1 - 8.2e-12 45.5 1.3 1.3e-11 44.9 1.3 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily ASCH PF04266.14 BAD86422.1 - 8.6e-14 52.0 0.1 1.1e-13 51.7 0.1 1.1 1 0 0 1 1 1 1 ASCH domain DUF1614 PF07758.11 BAD86423.1 - 5e-54 182.9 10.1 7.3e-54 182.3 10.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1614) Pribosyltran_N PF13793.6 BAD86424.1 - 3.2e-21 75.4 0.0 8.7e-18 64.4 0.0 2.2 2 0 0 2 2 2 2 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.27 BAD86424.1 - 5.1e-19 68.3 0.4 4.6e-17 62.0 0.3 2.2 2 0 0 2 2 2 2 Phosphoribosyl transferase domain Pribosyl_synth PF14572.6 BAD86424.1 - 1.5e-16 61.0 0.6 2.9e-16 60.0 0.4 1.5 1 1 0 1 1 1 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.6 BAD86424.1 - 2.7e-06 27.0 0.1 5.7e-06 25.9 0.1 1.5 2 0 0 2 2 2 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 BAD86424.1 - 0.0086 15.6 0.0 0.013 15.0 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase Acid_PPase PF12689.7 BAD86425.1 - 3.4e-08 33.5 0.0 7.3e-08 32.4 0.0 1.7 1 1 0 1 1 1 1 Acid Phosphatase NIF PF03031.18 BAD86425.1 - 4.5e-08 33.0 0.0 6.7e-08 32.4 0.0 1.3 1 1 0 1 1 1 1 NLI interacting factor-like phosphatase HAD_2 PF13419.6 BAD86425.1 - 2.4e-06 27.7 0.0 0.0014 18.7 0.0 2.6 2 1 1 3 3 3 2 Haloacid dehalogenase-like hydrolase HAD PF12710.7 BAD86425.1 - 0.00044 20.7 1.0 0.036 14.5 0.0 2.2 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase DUF2608 PF11019.8 BAD86425.1 - 0.00048 19.7 0.5 0.003 17.1 0.2 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF2608) Hydrolase PF00702.26 BAD86425.1 - 0.00088 19.6 0.0 1.5 9.1 0.0 2.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase DUF917 PF06032.12 BAD86425.1 - 0.15 10.8 0.0 0.18 10.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF917) DUF366 PF04017.12 BAD86426.1 - 3.1e-70 235.4 1.8 3.4e-70 235.3 1.8 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF366) BPL_LplA_LipB PF03099.19 BAD86426.1 - 0.067 13.1 0.1 0.098 12.6 0.1 1.3 1 0 0 1 1 1 0 Biotin/lipoate A/B protein ligase family Phage_holin_4_1 PF05105.12 BAD86427.1 - 0.039 14.1 0.3 0.075 13.2 0.3 1.5 1 0 0 1 1 1 0 Bacteriophage holin family PLDc_N PF13396.6 BAD86427.1 - 1.1 9.3 8.3 8.6 6.4 2.4 2.8 2 0 0 2 2 2 0 Phospholipase_D-nuclease N-terminal tRNA-synt_1f PF01921.18 BAD86429.1 - 1.8e-139 464.6 0.5 2.7e-139 464.1 0.5 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (K) tRNA-synt_1g PF09334.11 BAD86429.1 - 1.1e-06 27.6 3.0 0.013 14.3 0.0 3.6 3 1 0 3 3 3 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 BAD86429.1 - 0.0015 18.0 0.0 1 8.6 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain HypA PF01155.19 BAD86429.1 - 0.0019 18.2 0.0 0.0041 17.1 0.0 1.6 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-LITAF-like PF10601.9 BAD86429.1 - 0.0023 18.2 0.1 1.3 9.4 0.0 2.2 2 0 0 2 2 2 1 LITAF-like zinc ribbon domain tRNA-synt_1b PF00579.25 BAD86429.1 - 0.0061 15.9 0.0 0.36 10.1 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetases class I (W and Y) zinc_ribbon_10 PF10058.9 BAD86429.1 - 0.0067 16.1 0.5 0.014 15.1 0.5 1.4 1 0 0 1 1 1 1 Predicted integral membrane zinc-ribbon metal-binding protein zinc_ribbon_2 PF13240.6 BAD86429.1 - 0.032 14.0 3.4 1.3 8.8 0.6 2.5 2 0 0 2 2 2 0 zinc-ribbon domain Cys_rich_CPXG PF14255.6 BAD86429.1 - 0.049 13.5 2.5 1.2 9.1 0.1 2.4 2 0 0 2 2 2 0 Cysteine-rich CPXCG zf-Mss51 PF13824.6 BAD86429.1 - 0.068 13.3 1.7 0.16 12.1 1.7 1.6 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 MIP-T3 PF10243.9 BAD86429.1 - 0.095 12.7 0.0 0.19 11.7 0.0 1.4 1 0 0 1 1 1 0 Microtubule-binding protein MIP-T3 CH-like domain Phage_connect_1 PF05135.13 BAD86429.1 - 0.16 12.5 0.0 0.32 11.5 0.0 1.5 1 0 0 1 1 1 0 Phage gp6-like head-tail connector protein Lar_restr_allev PF14354.6 BAD86429.1 - 0.17 12.3 3.3 2 8.9 0.3 2.3 1 1 1 2 2 2 0 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.10 BAD86429.1 - 0.73 10.0 3.2 4 7.6 3.5 2.0 1 1 1 2 2 2 0 Zinc ribbon domain zf-ribbon_3 PF13248.6 BAD86429.1 - 0.74 9.3 4.8 3.9 7.0 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Terminase_GpA PF05876.12 BAD86429.1 - 0.75 8.3 3.3 1.3 7.5 3.3 1.3 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) Ogr_Delta PF04606.12 BAD86429.1 - 0.76 9.8 3.0 7.9 6.5 0.2 2.3 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger Zn_Tnp_IS1595 PF12760.7 BAD86429.1 - 0.83 9.7 5.7 4.2 7.4 5.6 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Nudix_N_2 PF14803.6 BAD86429.1 - 1.5 8.8 3.6 4.3 7.3 0.4 2.2 1 1 1 2 2 2 0 Nudix N-terminal Zn_ribbon_SprT PF17283.2 BAD86429.1 - 2.3 8.2 4.1 21 5.1 4.5 2.1 1 1 1 2 2 2 0 SprT-like zinc ribbon domain zf-ISL3 PF14690.6 BAD86429.1 - 6.4 7.5 5.7 4.5 8.0 0.2 2.7 3 0 0 3 3 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Methyltransf_25 PF13649.6 BAD86430.1 - 2e-26 92.5 0.0 3.2e-26 91.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 BAD86430.1 - 3.2e-24 85.4 0.0 5e-24 84.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 BAD86430.1 - 1.9e-20 73.2 0.0 2.2e-20 73.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 BAD86430.1 - 1.8e-16 60.2 0.0 3.6e-16 59.2 0.0 1.4 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 BAD86430.1 - 4.8e-16 59.0 0.0 5.8e-16 58.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 BAD86430.1 - 2.3e-14 53.9 0.0 3.7e-14 53.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 BAD86430.1 - 1.6e-07 31.0 0.0 2.5e-07 30.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain TehB PF03848.14 BAD86430.1 - 5e-06 26.1 0.0 7.4e-06 25.5 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_29 PF03141.16 BAD86430.1 - 1e-05 24.3 0.0 2.1e-05 23.3 0.0 1.3 1 1 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase CMAS PF02353.20 BAD86430.1 - 4.6e-05 22.9 0.0 5.3e-05 22.6 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MetW PF07021.12 BAD86430.1 - 8e-05 22.3 0.0 0.0001 22.0 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_8 PF05148.15 BAD86430.1 - 0.00043 20.2 0.0 0.0031 17.4 0.0 2.1 1 1 1 2 2 2 1 Hypothetical methyltransferase CheR PF01739.18 BAD86430.1 - 0.0018 17.8 0.0 0.029 13.8 0.0 2.3 1 1 1 2 2 2 1 CheR methyltransferase, SAM binding domain FtsJ PF01728.19 BAD86430.1 - 0.0027 17.9 0.0 0.034 14.3 0.0 2.0 1 1 1 2 2 2 1 FtsJ-like methyltransferase Methyltransf_32 PF13679.6 BAD86430.1 - 0.0038 17.2 0.0 0.0052 16.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_2 PF00891.18 BAD86430.1 - 0.013 14.8 0.0 0.017 14.4 0.0 1.3 1 0 0 1 1 1 0 O-methyltransferase domain Bin3 PF06859.12 BAD86430.1 - 0.047 14.3 0.1 0.14 12.8 0.0 2.1 1 1 1 2 2 2 0 Bicoid-interacting protein 3 (Bin3) Methyltransf_5 PF01795.19 BAD86430.1 - 0.059 12.9 0.0 0.19 11.2 0.0 1.8 1 1 1 2 2 2 0 MraW methylase family Ribonuc_red_2_N PF08471.10 BAD86430.1 - 0.064 13.4 0.0 0.16 12.2 0.0 1.7 1 1 0 1 1 1 0 Class II vitamin B12-dependent ribonucleotide reductase Methyltransf_PK PF05891.12 BAD86430.1 - 0.067 12.7 0.0 0.097 12.2 0.0 1.2 1 0 0 1 1 1 0 AdoMet dependent proline di-methyltransferase UPF0052 PF01933.18 BAD86430.1 - 0.071 12.3 0.0 0.096 11.9 0.0 1.1 1 0 0 1 1 1 0 Uncharacterised protein family UPF0052 Methyltransf_15 PF09445.10 BAD86430.1 - 0.15 11.6 0.0 0.23 11.0 0.0 1.4 1 1 0 1 1 1 0 RNA cap guanine-N2 methyltransferase UPF0020 PF01170.18 BAD86430.1 - 0.15 11.7 0.0 0.36 10.5 0.0 1.5 2 0 0 2 2 1 0 Putative RNA methylase family UPF0020 GHMP_kinases_C PF08544.13 BAD86431.1 - 1.1e-07 32.1 0.0 2.6e-07 30.9 0.0 1.6 1 0 0 1 1 1 1 GHMP kinases C terminal DUF1464 PF07318.12 BAD86432.1 - 3.4e-100 335.4 0.5 3.8e-100 335.2 0.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1464) Pribosyltran PF00156.27 BAD86432.1 - 0.068 12.7 0.0 4.4 6.8 0.0 2.3 2 0 0 2 2 2 0 Phosphoribosyl transferase domain Acetate_kinase PF00871.17 BAD86432.1 - 0.14 10.8 0.1 0.39 9.3 0.0 1.7 2 0 0 2 2 2 0 Acetokinase family POR PF01558.18 BAD86433.1 - 3.9e-35 121.5 0.0 4.5e-35 121.3 0.0 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase PhoU PF01895.19 BAD86434.1 - 8.6e-14 51.8 11.2 1.3e-12 48.0 1.4 2.8 3 0 0 3 3 3 2 PhoU domain MazE_antitoxin PF04014.18 BAD86434.1 - 1.7e-08 34.2 2.0 3.8e-08 33.1 0.1 2.7 3 0 0 3 3 3 1 Antidote-toxin recognition MazE, bacterial antitoxin Asparaginase_2 PF01112.18 BAD86435.1 - 2.6e-94 315.7 3.6 3.2e-94 315.4 3.6 1.0 1 0 0 1 1 1 1 Asparaginase MFS_1 PF07690.16 BAD86436.1 - 3.2e-42 144.7 55.9 1.4e-38 132.8 46.1 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 BAD86436.1 - 2.6e-14 52.9 25.4 1.2e-06 27.7 7.3 3.0 2 1 1 3 3 3 3 MFS_1 like family PUCC PF03209.15 BAD86436.1 - 2.2e-06 27.0 7.9 5.4e-06 25.7 7.9 1.7 1 0 0 1 1 1 1 PUCC protein Sugar_tr PF00083.24 BAD86436.1 - 0.00011 21.2 32.9 0.00013 20.9 6.3 3.2 1 1 2 3 3 3 2 Sugar (and other) transporter MFS_3 PF05977.13 BAD86436.1 - 0.00019 20.0 15.5 0.00029 19.4 15.5 1.3 1 1 0 1 1 1 1 Transmembrane secretion effector Radical_SAM PF04055.21 BAD86437.1 - 4.9e-13 49.8 0.1 4.9e-12 46.5 0.0 2.1 2 0 0 2 2 2 1 Radical SAM superfamily TPR_2 PF07719.17 BAD86438.1 - 1.3e-05 24.9 5.3 0.00035 20.5 0.3 3.0 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_8 PF13181.6 BAD86438.1 - 0.0016 18.5 3.6 0.004 17.3 0.0 3.1 3 1 1 4 4 4 1 Tetratricopeptide repeat TPR_21 PF09976.9 BAD86438.1 - 0.0027 17.4 0.0 0.0041 16.8 0.0 1.3 1 0 0 1 1 1 1 Tetratricopeptide repeat-like domain TPR_1 PF00515.28 BAD86438.1 - 0.009 15.8 0.4 0.009 15.8 0.4 2.8 3 1 0 3 3 3 1 Tetratricopeptide repeat TPR_7 PF13176.6 BAD86438.1 - 0.014 15.4 0.9 0.086 12.9 0.1 2.5 2 0 0 2 2 2 0 Tetratricopeptide repeat MAS20 PF02064.15 BAD86438.1 - 0.036 14.2 0.4 0.064 13.4 0.1 1.5 2 0 0 2 2 2 0 MAS20 protein import receptor TPR_19 PF14559.6 BAD86438.1 - 0.054 14.0 0.6 0.054 14.0 0.6 1.8 2 0 0 2 2 1 0 Tetratricopeptide repeat TPR_16 PF13432.6 BAD86438.1 - 0.071 13.8 0.1 0.2 12.3 0.1 1.8 1 1 0 1 1 1 0 Tetratricopeptide repeat TPR_14 PF13428.6 BAD86438.1 - 0.081 13.8 0.9 2.2 9.4 0.1 2.9 1 1 2 3 3 3 0 Tetratricopeptide repeat Utp13 PF08625.11 BAD86438.1 - 0.11 12.4 1.0 0.93 9.4 1.0 2.5 1 1 0 1 1 1 0 Utp13 specific WD40 associated domain TPR_6 PF13174.6 BAD86438.1 - 0.12 13.1 2.4 6.5 7.6 0.0 3.2 3 2 0 3 3 3 0 Tetratricopeptide repeat RIO1 PF01163.22 BAD86439.1 - 2.3e-49 167.6 0.0 2.8e-49 167.3 0.0 1.1 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.11 BAD86439.1 - 1.9e-23 82.5 0.0 4.3e-23 81.3 0.0 1.6 1 0 0 1 1 1 1 Rio2, N-terminal APH PF01636.23 BAD86439.1 - 4.2e-08 33.4 2.0 0.00014 21.9 0.1 3.1 1 1 2 3 3 3 2 Phosphotransferase enzyme family Pkinase PF00069.25 BAD86439.1 - 7.2e-08 32.1 0.1 2e-07 30.6 0.1 1.6 1 1 0 1 1 1 1 Protein kinase domain MarR_2 PF12802.7 BAD86439.1 - 0.073 13.0 0.0 0.35 10.8 0.0 2.1 2 0 0 2 2 2 0 MarR family MFS_1 PF07690.16 BAD86440.1 - 2.8e-55 187.7 81.3 1.3e-44 152.5 44.3 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 BAD86440.1 - 6.1e-16 58.3 21.0 8.3e-10 38.1 6.1 3.3 1 1 2 3 3 3 3 Sugar (and other) transporter MFS_2 PF13347.6 BAD86440.1 - 5.1e-05 22.0 23.3 0.00014 20.5 1.7 3.0 1 1 2 3 3 3 2 MFS/sugar transport protein MFS_1_like PF12832.7 BAD86440.1 - 0.00014 20.8 20.7 0.013 14.3 1.1 2.3 1 1 1 2 2 2 2 MFS_1 like family AAA PF00004.29 BAD86441.1 - 1.9e-44 151.3 0.0 3.4e-44 150.5 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 BAD86441.1 - 3.6e-13 49.1 0.3 7.4e-13 48.1 0.3 1.5 1 0 0 1 1 1 1 AAA+ lid domain Prot_ATP_ID_OB PF16450.5 BAD86441.1 - 4.8e-13 48.8 0.0 1.1e-12 47.8 0.0 1.5 1 0 0 1 1 1 1 Proteasomal ATPase OB C-terminal domain AAA_16 PF13191.6 BAD86441.1 - 3.7e-08 33.9 0.8 0.00024 21.5 0.0 3.6 3 1 1 4 4 4 1 AAA ATPase domain AAA_2 PF07724.14 BAD86441.1 - 7.7e-08 32.6 0.0 1.6e-06 28.4 0.0 2.2 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) Prot_ATP_OB_N PF17758.1 BAD86441.1 - 1.3e-06 27.9 0.0 4.4e-06 26.2 0.0 1.9 1 0 0 1 1 1 1 Proteasomal ATPase OB N-terminal domain RuvB_N PF05496.12 BAD86441.1 - 1.8e-06 27.8 0.0 4.1e-06 26.6 0.0 1.6 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_5 PF07728.14 BAD86441.1 - 3e-06 27.3 0.2 3.4e-05 23.9 0.2 2.6 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) DUF815 PF05673.13 BAD86441.1 - 5.7e-05 22.4 0.0 0.00016 20.9 0.0 1.7 2 0 0 2 2 1 1 Protein of unknown function (DUF815) AAA_22 PF13401.6 BAD86441.1 - 0.00035 20.9 0.1 0.0099 16.1 0.1 2.7 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 BAD86441.1 - 0.00055 20.2 0.3 0.0025 18.1 0.0 2.2 2 1 0 2 2 2 1 AAA domain AAA_14 PF13173.6 BAD86441.1 - 0.0012 18.9 0.0 0.0023 18.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain ATPase PF06745.13 BAD86441.1 - 0.0014 18.0 0.0 0.15 11.4 0.0 2.7 3 0 0 3 3 3 1 KaiC RNA_helicase PF00910.22 BAD86441.1 - 0.0023 18.3 0.0 0.0061 16.9 0.0 1.8 2 0 0 2 2 1 1 RNA helicase ATPase_2 PF01637.18 BAD86441.1 - 0.0032 17.4 0.0 0.031 14.2 0.0 2.3 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea NRBF2 PF08961.10 BAD86441.1 - 0.0054 16.4 0.5 0.0098 15.5 0.5 1.3 1 0 0 1 1 1 1 Nuclear receptor-binding factor 2, autophagy regulator AAA_3 PF07726.11 BAD86441.1 - 0.0073 16.2 0.0 0.014 15.3 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TIP49 PF06068.13 BAD86441.1 - 0.0073 15.5 0.0 0.013 14.7 0.0 1.6 1 0 0 1 1 1 1 TIP49 P-loop domain HHH_9 PF17674.1 BAD86441.1 - 0.0077 17.1 0.0 0.034 15.0 0.0 2.1 1 0 0 1 1 1 1 HHH domain Mg_chelatase PF01078.21 BAD86441.1 - 0.0093 15.4 0.0 0.018 14.4 0.0 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_17 PF13207.6 BAD86441.1 - 0.01 16.3 0.1 0.028 14.9 0.0 1.9 2 0 0 2 2 1 0 AAA domain CENP-F_leu_zip PF10473.9 BAD86441.1 - 0.011 15.8 0.6 0.026 14.6 0.1 1.8 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 AAA_30 PF13604.6 BAD86441.1 - 0.011 15.5 0.0 0.046 13.4 0.0 1.9 1 1 0 1 1 1 0 AAA domain HALZ PF02183.18 BAD86441.1 - 0.012 15.8 3.2 0.076 13.2 0.6 2.6 2 0 0 2 2 2 0 Homeobox associated leucine zipper AAA_18 PF13238.6 BAD86441.1 - 0.017 15.6 0.0 0.041 14.4 0.0 1.8 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 BAD86441.1 - 0.022 14.5 0.0 0.054 13.2 0.0 1.7 1 0 0 1 1 1 0 IstB-like ATP binding protein NTPase_1 PF03266.15 BAD86441.1 - 0.028 14.3 0.1 0.58 10.1 0.0 2.6 2 1 0 2 2 2 0 NTPase AAA_7 PF12775.7 BAD86441.1 - 0.042 13.4 0.0 0.097 12.2 0.0 1.5 2 0 0 2 2 1 0 P-loop containing dynein motor region Zeta_toxin PF06414.12 BAD86441.1 - 0.052 12.8 0.0 0.1 11.9 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin TsaE PF02367.17 BAD86441.1 - 0.054 13.5 0.0 0.093 12.7 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Prefoldin_2 PF01920.20 BAD86441.1 - 0.058 13.4 1.5 0.19 11.7 0.3 2.2 2 0 0 2 2 2 0 Prefoldin subunit AAA_33 PF13671.6 BAD86441.1 - 0.063 13.4 0.0 0.17 12.0 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 BAD86441.1 - 0.065 12.9 0.3 0.18 11.5 0.1 1.9 2 1 0 2 2 1 0 AAA domain TMF_TATA_bd PF12325.8 BAD86441.1 - 0.071 13.3 1.1 0.16 12.2 0.3 1.9 2 0 0 2 2 1 0 TATA element modulatory factor 1 TATA binding Sigma54_activat PF00158.26 BAD86441.1 - 0.083 12.6 0.0 0.63 9.7 0.0 2.4 3 0 0 3 3 3 0 Sigma-54 interaction domain NB-ARC PF00931.22 BAD86441.1 - 0.11 11.7 0.0 0.23 10.6 0.0 1.5 1 0 0 1 1 1 0 NB-ARC domain AAA_25 PF13481.6 BAD86441.1 - 0.12 12.0 1.1 0.46 10.0 0.0 2.4 3 0 0 3 3 3 0 AAA domain Bac_DnaA PF00308.18 BAD86441.1 - 0.13 12.1 0.1 1.8 8.4 0.0 2.6 3 0 0 3 3 3 0 Bacterial dnaA protein ZapB PF06005.12 BAD86441.1 - 0.14 12.6 0.2 0.14 12.6 0.2 2.1 3 0 0 3 3 1 0 Cell division protein ZapB Parvo_NS1 PF01057.17 BAD86441.1 - 0.15 11.1 0.0 0.25 10.4 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 APG6_N PF17675.1 BAD86441.1 - 0.18 12.3 1.5 0.31 11.6 0.1 2.1 3 0 0 3 3 1 0 Apg6 coiled-coil region DUF5595 PF18077.1 BAD86441.1 - 0.19 11.8 0.5 0.46 10.6 0.5 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF5595) Prefoldin PF02996.17 BAD86441.1 - 0.24 11.3 2.0 0.37 10.7 0.4 1.9 2 0 0 2 2 2 0 Prefoldin subunit SlyX PF04102.12 BAD86441.1 - 0.26 11.9 1.9 1.1 10.0 0.5 2.4 2 0 0 2 2 2 0 SlyX MAD PF05557.13 BAD86441.1 - 0.31 9.3 1.8 0.52 8.6 1.8 1.3 1 0 0 1 1 1 0 Mitotic checkpoint protein ABC_tran_CTD PF16326.5 BAD86441.1 - 0.41 10.9 3.3 4.1 7.7 1.2 2.5 2 0 0 2 2 2 0 ABC transporter C-terminal domain DHR10 PF18595.1 BAD86441.1 - 0.81 9.8 5.0 0.54 10.3 2.5 1.9 2 0 0 2 2 1 0 Designed helical repeat protein 10 domain DUF4164 PF13747.6 BAD86441.1 - 1 9.7 5.7 0.26 11.6 1.0 2.4 3 0 0 3 3 1 0 Domain of unknown function (DUF4164) Cas_Cas6 PF01881.16 BAD86442.1 - 3.9e-32 111.8 0.1 6.4e-32 111.1 0.1 1.3 1 0 0 1 1 1 1 CRISPR associated protein Cas6 Arylesterase PF01731.20 BAD86442.1 - 0.028 14.6 0.1 0.054 13.7 0.1 1.4 1 0 0 1 1 1 0 Arylesterase Thi4 PF01946.17 BAD86442.1 - 0.12 11.6 0.0 0.17 11.1 0.0 1.1 1 0 0 1 1 1 0 Thi4 family Glycos_transf_4 PF00953.21 BAD86443.1 - 5.5e-33 114.2 10.6 9.3e-33 113.5 10.6 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 4 HAD_2 PF13419.6 BAD86444.1 - 1e-25 90.9 0.0 3.2e-25 89.2 0.0 1.9 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Glycos_transf_2 PF00535.26 BAD86444.1 - 1e-25 90.5 0.0 2.7e-25 89.1 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferase family 2 Hydrolase PF00702.26 BAD86444.1 - 2.2e-17 64.0 0.3 4e-13 50.1 0.1 2.7 2 1 0 3 3 3 2 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 BAD86444.1 - 1.6e-08 34.5 0.0 4.7e-08 33.0 0.0 1.8 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 BAD86444.1 - 6.6e-08 33.2 0.1 1.6e-07 31.9 0.0 1.7 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Glyco_tranf_2_3 PF13641.6 BAD86444.1 - 3.8e-06 27.0 0.0 6.7e-06 26.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Hydrolase_6 PF13344.6 BAD86444.1 - 0.00024 21.2 0.0 1.5 9.0 0.0 3.0 3 0 0 3 3 2 2 Haloacid dehalogenase-like hydrolase Glyco_tranf_2_4 PF13704.6 BAD86444.1 - 0.006 17.1 0.0 0.013 16.0 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 2 Hydrolase_3 PF08282.12 BAD86444.1 - 0.022 14.5 0.0 1 9.0 0.0 2.6 3 0 0 3 3 3 0 haloacid dehalogenase-like hydrolase S6PP PF05116.13 BAD86444.1 - 0.089 12.3 0.0 2.2 7.7 0.0 2.3 2 0 0 2 2 2 0 Sucrose-6F-phosphate phosphohydrolase SL4P PF17618.2 BAD86444.1 - 0.11 12.5 0.0 8.5 6.5 0.0 2.4 2 0 0 2 2 2 0 Uncharacterized Strongylid L4 protein Acid_PPase PF12689.7 BAD86444.1 - 0.17 11.7 0.0 25 4.6 0.0 2.4 2 0 0 2 2 2 0 Acid Phosphatase NIF PF03031.18 BAD86444.1 - 0.19 11.5 0.0 1.1 9.0 0.0 2.1 1 1 0 1 1 1 0 NLI interacting factor-like phosphatase DUF2304 PF10066.9 BAD86445.1 - 7.7e-26 90.4 6.2 9.5e-26 90.1 6.2 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2304) DUF5353 PF17304.2 BAD86445.1 - 8.3e-05 22.3 0.6 0.00013 21.7 0.6 1.3 1 0 0 1 1 1 1 Family of unknown function (DUF5353) Matrilin_ccoil PF10393.9 BAD86445.1 - 0.0029 17.4 1.9 0.0074 16.1 1.8 1.6 2 0 0 2 2 2 1 Trimeric coiled-coil oligomerisation domain of matrilin TauE PF01925.19 BAD86445.1 - 0.0073 16.0 1.3 0.008 15.8 1.3 1.1 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF2976 PF11190.8 BAD86445.1 - 0.0098 15.7 1.8 0.0098 15.7 1.8 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF2976) DUF999 PF06198.11 BAD86445.1 - 0.023 14.7 0.5 0.035 14.1 0.4 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF999) SelB-wing_3 PF09107.11 BAD86445.1 - 0.023 14.3 0.0 0.6 9.8 0.0 2.2 2 0 0 2 2 2 0 Elongation factor SelB, winged helix DUF3262 PF11660.8 BAD86445.1 - 0.045 14.2 6.1 0.045 14.2 6.1 1.5 2 0 0 2 2 1 0 Protein of unknown function (DUF3262) TssO PF17561.2 BAD86445.1 - 0.15 12.1 0.2 0.15 12.1 0.2 1.9 2 1 0 2 2 2 0 Type VI secretion system, TssO DUF3180 PF11377.8 BAD86445.1 - 0.21 11.7 3.0 0.27 11.4 3.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3180) DUF2069 PF09842.9 BAD86445.1 - 0.26 11.5 7.5 0.2 11.9 4.7 1.9 2 0 0 2 2 2 0 Predicted membrane protein (DUF2069) UPF0242 PF06785.11 BAD86445.1 - 0.29 11.2 4.1 0.59 10.2 4.1 1.6 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus DUF2070 PF09843.9 BAD86445.1 - 0.41 8.9 5.3 0.44 8.8 5.3 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) LMBR1 PF04791.16 BAD86445.1 - 1.4 7.7 8.4 5.1 5.9 8.5 1.7 1 1 0 1 1 1 0 LMBR1-like membrane protein TraG_N PF07916.11 BAD86445.1 - 1.5 7.6 3.2 1.2 7.9 1.0 1.7 2 0 0 2 2 2 0 TraG-like protein, N-terminal region GP41 PF00517.17 BAD86445.1 - 2.9 7.7 4.7 1.9 8.4 1.4 2.1 2 0 0 2 2 2 0 Retroviral envelope protein dCMP_cyt_deam_1 PF00383.23 BAD86446.1 - 2.6e-29 101.1 0.1 3.6e-29 100.6 0.1 1.2 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region MafB19-deam PF14437.6 BAD86446.1 - 2e-20 72.9 0.0 2.6e-20 72.6 0.0 1.1 1 0 0 1 1 1 1 MafB19-like deaminase Bd3614-deam PF14439.6 BAD86446.1 - 0.015 15.3 0.0 0.03 14.4 0.0 1.4 1 1 0 1 1 1 0 Bd3614-like deaminase APOBEC3 PF18771.1 BAD86446.1 - 0.021 15.0 0.0 0.041 14.0 0.0 1.6 1 1 0 1 1 1 0 APOBEC3 Peptidase_M48 PF01435.18 BAD86447.1 - 7.3e-23 81.4 0.0 9.8e-23 80.9 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 BAD86447.1 - 0.016 14.4 0.0 0.034 13.3 0.0 1.7 1 1 0 1 1 1 0 BlaR1 peptidase M56 Penicillinase_R PF03965.16 BAD86448.1 - 1.8e-17 63.8 0.2 2.1e-17 63.5 0.2 1.1 1 0 0 1 1 1 1 Penicillinase repressor HxlR PF01638.17 BAD86448.1 - 0.0002 21.2 0.5 0.00064 19.5 0.3 1.8 1 1 1 2 2 2 1 HxlR-like helix-turn-helix Replic_Relax PF13814.6 BAD86448.1 - 0.00078 19.6 0.0 0.0012 19.0 0.1 1.4 2 0 0 2 2 2 1 Replication-relaxation FUR PF01475.19 BAD86448.1 - 0.0088 16.2 0.0 0.011 15.8 0.0 1.3 1 0 0 1 1 1 1 Ferric uptake regulator family PadR PF03551.14 BAD86448.1 - 0.0092 15.9 0.1 0.13 12.3 0.2 2.4 1 1 1 2 2 2 1 Transcriptional regulator PadR-like family TFIIE_alpha PF02002.17 BAD86448.1 - 0.0094 15.8 0.2 0.016 15.1 0.2 1.5 1 1 0 1 1 1 1 TFIIE alpha subunit Cdc6_C PF09079.11 BAD86448.1 - 0.014 15.3 0.9 0.027 14.4 0.9 1.5 1 1 0 1 1 1 0 CDC6, C terminal winged helix domain TrmB PF01978.19 BAD86448.1 - 0.016 15.1 0.1 0.043 13.7 0.1 1.8 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 BAD86448.1 - 0.033 14.3 0.0 0.082 13.0 0.0 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain PPR_2 PF13041.6 BAD86448.1 - 0.042 14.0 0.0 0.091 13.0 0.0 1.6 1 0 0 1 1 1 0 PPR repeat family MarR_2 PF12802.7 BAD86448.1 - 0.16 11.9 0.1 0.28 11.1 0.1 1.6 1 1 0 1 1 1 0 MarR family DHO_dh PF01180.21 BAD86449.1 - 3.7e-65 220.1 0.0 4.2e-65 219.9 0.0 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Dus PF01207.17 BAD86449.1 - 4e-13 49.1 0.0 1.4e-12 47.3 0.0 1.7 1 1 0 1 1 1 1 Dihydrouridine synthase (Dus) NMO PF03060.15 BAD86449.1 - 0.00016 21.1 4.8 0.00038 20.0 0.8 2.1 1 1 1 2 2 2 1 Nitronate monooxygenase DUF561 PF04481.12 BAD86449.1 - 0.0025 17.0 0.1 0.0073 15.5 0.1 1.8 2 1 0 2 2 2 1 Protein of unknown function (DUF561) His_biosynth PF00977.21 BAD86449.1 - 0.0055 16.2 0.0 0.014 14.9 0.0 1.6 1 0 0 1 1 1 1 Histidine biosynthesis protein IMPDH PF00478.25 BAD86449.1 - 0.0056 15.7 0.1 0.011 14.7 0.1 1.4 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain MazE_antitoxin PF04014.18 BAD86450.1 - 1.9e-13 50.0 0.3 2.7e-13 49.5 0.3 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin PrlF_antitoxin PF15937.5 BAD86450.1 - 7.7e-06 26.3 0.0 8.2e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 prlF antitoxin for toxin YhaV_toxin DUF1905 PF08922.11 BAD86450.1 - 0.025 14.6 0.1 0.045 13.8 0.0 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1905) HAS-barrel PF09378.10 BAD86450.1 - 0.1 12.7 0.1 0.12 12.5 0.1 1.1 1 0 0 1 1 1 0 HAS barrel domain Skp1 PF01466.19 BAD86450.1 - 1.2 9.3 8.3 13 6.0 0.0 2.7 2 1 0 2 2 2 0 Skp1 family, dimerisation domain PIN PF01850.21 BAD86451.1 - 2.4e-12 47.4 1.0 2.8e-12 47.2 1.0 1.0 1 0 0 1 1 1 1 PIN domain PIN_9 PF18477.1 BAD86451.1 - 0.00063 20.0 0.4 0.0038 17.5 0.4 1.9 1 1 0 1 1 1 1 PIN like domain Peptidase_M13 PF01431.21 BAD86451.1 - 0.025 14.2 0.0 0.03 13.9 0.0 1.2 1 0 0 1 1 1 0 Peptidase family M13 PIN_3 PF13470.6 BAD86451.1 - 0.05 14.4 0.1 0.093 13.5 0.1 1.6 1 1 0 1 1 1 0 PIN domain PIN_8 PF18476.1 BAD86451.1 - 0.078 12.8 0.1 0.092 12.6 0.1 1.1 1 0 0 1 1 1 0 PIN like domain PIN_4 PF13638.6 BAD86451.1 - 0.093 13.0 0.6 0.32 11.3 0.6 1.9 1 1 0 1 1 1 0 PIN domain QueC PF06508.13 BAD86452.1 - 7.1e-64 215.2 0.0 8.8e-64 214.9 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.20 BAD86452.1 - 1.1e-06 28.5 0.0 0.00013 21.8 0.0 2.1 2 0 0 2 2 2 1 PP-loop family Arginosuc_synth PF00764.19 BAD86452.1 - 3.2e-05 23.4 0.0 6.2e-05 22.5 0.0 1.5 2 0 0 2 2 2 1 Arginosuccinate synthase ThiI PF02568.14 BAD86452.1 - 4.8e-05 23.0 0.0 0.23 11.0 0.0 2.7 2 1 1 3 3 3 2 Thiamine biosynthesis protein (ThiI) Diphthami_syn_2 PF01902.17 BAD86452.1 - 0.00066 19.2 0.0 0.0013 18.2 0.0 1.6 1 0 0 1 1 1 1 Diphthamide synthase PAPS_reduct PF01507.19 BAD86452.1 - 0.0027 17.8 0.0 0.1 12.6 0.0 2.1 2 0 0 2 2 2 1 Phosphoadenosine phosphosulfate reductase family Asn_synthase PF00733.21 BAD86452.1 - 0.0095 15.6 0.0 0.013 15.2 0.0 1.1 1 0 0 1 1 1 1 Asparagine synthase tRNA_Me_trans PF03054.16 BAD86452.1 - 0.034 12.9 0.0 0.05 12.4 0.0 1.2 1 0 0 1 1 1 0 tRNA methyl transferase NAD_synthase PF02540.17 BAD86452.1 - 0.04 13.0 0.0 0.8 8.8 0.0 2.1 2 0 0 2 2 2 0 NAD synthase DUF4023 PF13215.6 BAD86452.1 - 0.14 12.2 0.0 0.3 11.1 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF4023) DUF553 PF04473.12 BAD86453.1 - 1.6e-57 193.4 3.6 2.5e-57 192.7 3.6 1.3 1 0 0 1 1 1 1 Transglutaminase-like domain Binary_toxB PF03495.14 BAD86453.1 - 6.4e-09 35.9 52.3 0.001 19.2 2.7 7.7 4 4 4 8 8 8 7 Clostridial binary toxin B/anthrax toxin PA Ca-binding domain Transglut_core PF01841.19 BAD86453.1 - 0.0055 17.1 0.1 0.15 12.6 0.1 2.4 1 1 0 1 1 1 1 Transglutaminase-like superfamily Peptidase_C93 PF06035.11 BAD86453.1 - 0.036 13.8 0.0 0.073 12.9 0.0 1.5 1 0 0 1 1 1 0 Bacterial transglutaminase-like cysteine proteinase BTLCP UcrQ PF02939.16 BAD86453.1 - 0.21 11.5 0.3 5.7 7.0 0.0 2.5 2 0 0 2 2 2 0 UcrQ family Trep_Strep PF09605.10 BAD86454.1 - 6.5 6.7 12.9 1.7 8.6 2.8 2.0 1 1 1 2 2 2 0 Hypothetical bacterial integral membrane protein (Trep_Strep) MFS_1 PF07690.16 BAD86455.1 - 1.3e-20 73.6 42.5 1.9e-20 73.1 42.5 1.1 1 0 0 1 1 1 1 Major Facilitator Superfamily Arm_vescicular PF18770.1 BAD86455.1 - 0.013 15.4 0.1 0.024 14.5 0.1 1.4 1 0 0 1 1 1 0 Armadillo tether-repeat of vescicular transport factor Pox_A14 PF05767.12 BAD86455.1 - 0.89 9.8 4.9 0.28 11.4 0.9 2.3 2 0 0 2 2 2 0 Poxvirus virion envelope protein A14 UPF0016 PF01169.19 BAD86456.1 - 1e-22 80.2 5.5 1.2e-22 80.0 5.5 1.0 1 0 0 1 1 1 1 Uncharacterized protein family UPF0016 MatE PF01554.18 BAD86456.1 - 0.066 12.9 3.4 0.074 12.7 3.4 1.1 1 0 0 1 1 1 0 MatE Aminotran_1_2 PF00155.21 BAD86457.1 - 4.8e-73 246.4 0.0 5.5e-73 246.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 BAD86457.1 - 2.6e-06 27.0 0.0 4.1e-06 26.3 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 BAD86457.1 - 3.1e-06 26.4 0.0 7.2e-06 25.2 0.0 1.5 2 0 0 2 2 2 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 BAD86457.1 - 4e-05 23.0 0.0 5.9e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Alliinase_C PF04864.13 BAD86457.1 - 0.0032 16.4 0.3 0.041 12.8 0.2 2.3 1 1 1 2 2 2 1 Allinase Cys_Met_Meta_PP PF01053.20 BAD86457.1 - 0.01 14.4 0.0 0.02 13.5 0.0 1.4 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Radical_SAM PF04055.21 BAD86457.1 - 0.011 16.2 0.2 0.092 13.1 0.0 2.4 2 1 0 2 2 2 0 Radical SAM superfamily CGI-121 PF08617.10 BAD86458.1 - 0.00016 21.8 0.0 0.0002 21.5 0.0 1.2 1 0 0 1 1 1 1 Kinase binding protein CGI-121 CHASE8 PF17152.4 BAD86458.1 - 0.15 12.4 0.0 0.48 10.7 0.0 1.8 2 1 0 2 2 2 0 Periplasmic sensor domain RHH_1 PF01402.21 BAD86459.1 - 1.5e-08 34.3 0.0 2.3e-08 33.7 0.0 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_8 PF17723.1 BAD86459.1 - 7.7e-06 26.1 0.0 8.1e-06 26.0 0.0 1.1 1 0 0 1 1 1 1 Ribbon-Helix-Helix transcriptional regulator family ParD_antitoxin PF03693.14 BAD86459.1 - 0.019 15.3 0.0 0.022 15.2 0.0 1.1 1 0 0 1 1 1 0 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH Cdh1_DBD_1 PF18196.1 BAD86459.1 - 0.025 14.9 0.0 0.028 14.7 0.0 1.0 1 0 0 1 1 1 0 Chromodomain helicase DNA-binding domain 1 DUF2533 PF10752.9 BAD86459.1 - 0.13 12.8 0.0 0.14 12.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2533) Tubulin PF00091.25 BAD86460.1 - 1.4e-43 149.4 0.1 2.6e-43 148.5 0.1 1.5 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 BAD86460.1 - 5.1e-26 90.8 4.3 1e-25 89.8 0.9 2.7 3 0 0 3 3 3 1 FtsZ family, C-terminal domain HGTP_anticodon PF03129.20 BAD86460.1 - 0.15 12.2 0.2 12 6.1 0.0 3.4 4 0 0 4 4 4 0 Anticodon binding domain AAA_31 PF13614.6 BAD86461.1 - 8.7e-54 182.1 0.1 1.3e-53 181.5 0.1 1.3 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 BAD86461.1 - 3.8e-28 98.1 0.0 4.7e-28 97.8 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 BAD86461.1 - 5.4e-15 55.5 0.2 1.1e-14 54.5 0.2 1.5 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase Fer4_NifH PF00142.18 BAD86461.1 - 1.5e-12 47.5 0.3 2.1e-06 27.4 0.0 2.2 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CBP_BcsQ PF06564.12 BAD86461.1 - 2.1e-12 47.1 0.0 3.1e-12 46.5 0.0 1.3 1 0 0 1 1 1 1 Cellulose biosynthesis protein BcsQ MipZ PF09140.11 BAD86461.1 - 1.9e-10 40.5 0.1 2.1e-08 33.8 0.1 2.1 1 1 0 1 1 1 1 ATPase MipZ ArsA_ATPase PF02374.15 BAD86461.1 - 9.5e-09 34.9 0.8 9.4e-08 31.6 0.5 2.7 1 1 1 2 2 2 1 Anion-transporting ATPase VirC1 PF07015.11 BAD86461.1 - 0.00027 20.3 0.7 0.0024 17.2 0.0 2.5 2 1 1 3 3 3 1 VirC1 protein MeaB PF03308.16 BAD86461.1 - 0.00069 18.7 0.1 0.001 18.1 0.1 1.2 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB Thymidylate_kin PF02223.17 BAD86461.1 - 0.013 15.1 0.3 5.4 6.6 0.0 2.5 2 1 0 2 2 2 0 Thymidylate kinase FTHFS PF01268.19 BAD86461.1 - 0.096 10.9 0.1 0.13 10.4 0.1 1.2 1 0 0 1 1 1 0 Formate--tetrahydrofolate ligase CLP1_P PF16575.5 BAD86461.1 - 0.14 11.9 0.0 0.24 11.2 0.0 1.4 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop CTP_transf_like PF01467.26 BAD86463.1 - 4.5e-25 88.5 0.1 5.2e-25 88.3 0.1 1.0 1 0 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 BAD86463.1 - 0.00014 21.7 0.1 0.00057 19.8 0.1 1.8 2 0 0 2 2 2 1 FAD synthetase Transketolase_C PF02780.20 BAD86463.1 - 0.0061 16.4 0.0 0.019 14.8 0.0 1.8 1 1 1 2 2 2 1 Transketolase, C-terminal domain Peripla_BP_2 PF01497.18 BAD86463.1 - 0.029 13.9 0.0 0.037 13.6 0.0 1.2 1 0 0 1 1 1 0 Periplasmic binding protein PUA PF01472.20 BAD86464.1 - 2.2e-23 82.0 1.0 2.2e-23 82.0 1.0 2.0 2 1 0 2 2 2 1 PUA domain DUF1947 PF09183.10 BAD86464.1 - 4.3e-07 30.1 3.7 1.1e-06 28.8 3.7 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF1947) UPF0113 PF03657.13 BAD86464.1 - 4.8e-07 30.0 0.3 1.3e-06 28.6 0.1 1.7 2 0 0 2 2 2 1 UPF0113 PUA domain Pre-PUA PF17832.1 BAD86464.1 - 2e-05 25.2 0.2 3.2e-05 24.5 0.2 1.3 1 0 0 1 1 1 1 Pre-PUA-like domain PUA_3 PF17785.1 BAD86464.1 - 0.087 12.6 0.7 2.2 8.2 0.1 2.3 2 0 0 2 2 2 0 PUA-like domain OMPdecase PF00215.24 BAD86465.1 - 1.3e-39 136.1 0.0 1.7e-39 135.8 0.0 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family NanE PF04131.14 BAD86465.1 - 0.035 13.3 2.6 4.2 6.5 1.3 3.4 2 1 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase DUF4443 PF14544.6 BAD86466.1 - 5.2e-77 255.3 0.3 7.5e-77 254.8 0.3 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4443) DUF4093 PF13331.6 BAD86466.1 - 0.024 15.1 0.0 0.15 12.5 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4093) HrcA_DNA-bdg PF03444.15 BAD86466.1 - 0.05 13.3 0.0 0.11 12.2 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Ribosomal_S19e PF01090.19 BAD86466.1 - 0.052 13.2 0.0 0.081 12.6 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein S19e Fe_dep_repress PF01325.19 BAD86466.1 - 0.058 13.6 0.0 0.11 12.7 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Inos-1-P_synth PF01658.17 BAD86467.1 - 1.8e-20 73.2 0.0 3.1e-20 72.5 0.0 1.4 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase NAD_binding_5 PF07994.12 BAD86467.1 - 4e-09 36.3 0.0 1.1e-08 34.8 0.0 1.8 2 1 0 2 2 2 1 Myo-inositol-1-phosphate synthase Pesticin PF16754.5 BAD86467.1 - 0.054 13.4 0.0 0.12 12.3 0.0 1.6 1 0 0 1 1 1 0 Bacterial toxin homologue of phage lysozyme, C-term RRM_1 PF00076.22 BAD86467.1 - 0.075 12.9 0.0 0.18 11.7 0.0 1.6 1 0 0 1 1 1 0 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) NTP_transf_3 PF12804.7 BAD86468.1 - 6.9e-18 65.5 0.0 2.3e-17 63.8 0.0 1.8 2 0 0 2 2 2 1 MobA-like NTP transferase domain CDP-OH_P_transf PF01066.21 BAD86468.1 - 4.7e-10 40.1 0.5 4.7e-10 40.1 0.5 3.0 3 1 0 3 3 3 1 CDP-alcohol phosphatidyltransferase NTP_transferase PF00483.23 BAD86468.1 - 3.4e-09 36.7 0.1 1.9e-07 31.0 0.1 2.3 1 1 0 1 1 1 1 Nucleotidyl transferase IspD PF01128.19 BAD86468.1 - 4.3e-05 23.3 0.0 7.4e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AhpC-TSA_2 PF13911.6 BAD86468.1 - 0.081 13.0 0.0 0.11 12.6 0.0 1.4 1 0 0 1 1 1 0 AhpC/TSA antioxidant enzyme DUF1831 PF08866.10 BAD86468.1 - 0.092 13.2 0.0 0.27 11.7 0.0 1.8 1 0 0 1 1 1 0 Putative amino acid metabolism Diphthami_syn_2 PF01902.17 BAD86469.1 - 2.9e-86 288.5 1.1 3.2e-86 288.4 1.1 1.0 1 0 0 1 1 1 1 Diphthamide synthase QueC PF06508.13 BAD86469.1 - 0.0043 16.6 0.0 0.0086 15.6 0.0 1.5 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 BAD86469.1 - 0.021 13.6 0.1 0.045 12.5 0.1 1.7 1 1 0 1 1 1 0 tRNA methyl transferase ThiI PF02568.14 BAD86469.1 - 0.03 13.9 0.0 0.084 12.4 0.0 1.7 2 0 0 2 2 2 0 Thiamine biosynthesis protein (ThiI) ABC_tran PF00005.27 BAD86470.1 - 1.3e-27 97.0 0.0 1.9e-27 96.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 BAD86470.1 - 1.4e-11 44.8 3.5 5.6e-07 29.7 0.2 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 BAD86470.1 - 0.0063 16.2 0.2 0.012 15.4 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 BAD86470.1 - 0.0084 16.4 0.5 4.9 7.4 0.0 2.3 2 0 0 2 2 2 2 AAA domain Rad17 PF03215.15 BAD86470.1 - 0.031 14.2 0.0 0.056 13.4 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_23 PF13476.6 BAD86470.1 - 0.033 14.7 2.7 0.047 14.2 0.4 2.0 2 1 0 2 2 2 0 AAA domain AAA_30 PF13604.6 BAD86470.1 - 0.041 13.6 0.1 0.19 11.4 0.1 1.9 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 BAD86470.1 - 0.054 12.9 0.0 0.11 11.9 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI SMC_N PF02463.19 BAD86470.1 - 0.054 12.9 0.2 0.64 9.4 0.1 2.0 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA PF00004.29 BAD86470.1 - 0.077 13.4 0.5 0.27 11.7 0.5 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) STAS PF01740.21 BAD86470.1 - 0.13 11.9 0.0 0.25 11.0 0.0 1.6 1 1 0 1 1 1 0 STAS domain 12TM_1 PF09847.9 BAD86471.1 - 2.8e-144 481.6 23.9 3.2e-144 481.4 23.9 1.0 1 0 0 1 1 1 1 Membrane protein of 12 TMs Cytochrom_B558a PF05038.13 BAD86471.1 - 0.92 9.1 4.0 0.41 10.2 0.9 2.0 2 0 0 2 2 2 0 Cytochrome Cytochrome b558 alpha-subunit DUF498 PF04430.14 BAD86472.1 - 3.5e-12 46.4 0.0 4e-12 46.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF498/DUF598) NUDIX PF00293.28 BAD86473.1 - 5e-23 81.6 0.0 6.8e-23 81.1 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain DUF4916 PF16262.5 BAD86473.1 - 2.4e-05 23.9 0.0 0.00013 21.5 0.0 1.9 1 1 0 1 1 1 1 Domain of unknown function (DUF4916) PfkB PF00294.24 BAD86474.1 - 5.9e-05 22.5 0.0 0.00017 21.0 0.0 1.6 2 0 0 2 2 2 1 pfkB family carbohydrate kinase Gar1 PF04410.14 BAD86475.1 - 1.3e-08 34.8 0.1 1.7e-08 34.4 0.0 1.2 1 1 0 1 1 1 1 Gar1/Naf1 RNA binding region TFIIB PF00382.19 BAD86476.1 - 1.1e-39 134.3 3.7 4.5e-19 68.3 0.4 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 BAD86476.1 - 1.1e-19 69.6 3.1 1.3e-19 69.4 2.0 1.6 2 0 0 2 2 2 1 TFIIB zinc-binding Sigma70_r4 PF04545.16 BAD86476.1 - 5.4e-05 22.6 2.0 0.0016 17.9 0.2 3.4 3 0 0 3 3 3 1 Sigma-70, region 4 Cyclin_N PF00134.23 BAD86476.1 - 0.002 17.9 0.1 0.078 12.7 0.0 2.2 2 0 0 2 2 2 1 Cyclin, N-terminal domain zf-ribbon_3 PF13248.6 BAD86476.1 - 0.0033 16.8 1.9 0.3 10.5 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon domain HTH_AsnC-type PF13404.6 BAD86476.1 - 0.0047 16.7 0.1 0.033 14.0 0.1 2.5 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain FYDLN_acid PF09538.10 BAD86476.1 - 0.011 16.4 0.0 0.023 15.4 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (FYDLN_acid) HTH_23 PF13384.6 BAD86476.1 - 0.012 15.4 1.3 0.17 11.7 0.1 3.1 3 0 0 3 3 3 0 Homeodomain-like domain Sigma70_r4_2 PF08281.12 BAD86476.1 - 0.028 14.1 0.6 0.13 12.0 0.1 2.4 2 0 0 2 2 2 0 Sigma-70, region 4 Cyclin_C PF02984.19 BAD86476.1 - 0.038 14.1 0.0 1.7 8.7 0.0 2.2 1 1 1 2 2 2 0 Cyclin, C-terminal domain DUF3053 PF11254.8 BAD86476.1 - 0.046 13.3 0.0 0.083 12.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3053) HTH_Tnp_ISL3 PF13542.6 BAD86476.1 - 0.054 12.9 0.2 0.16 11.4 0.1 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 Zn_Tnp_IS1595 PF12760.7 BAD86476.1 - 0.061 13.3 0.9 0.13 12.2 0.9 1.6 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Lar_restr_allev PF14354.6 BAD86476.1 - 0.066 13.6 0.5 0.19 12.1 0.5 1.7 1 0 0 1 1 1 0 Restriction alleviation protein Lar DUF2318 PF10080.9 BAD86476.1 - 0.069 13.3 0.3 0.13 12.4 0.3 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) HARE-HTH PF05066.13 BAD86476.1 - 0.099 13.1 0.1 3.5 8.1 0.1 2.4 2 0 0 2 2 2 0 HB1, ASXL, restriction endonuclease HTH domain UPF0253 PF06786.12 BAD86476.1 - 0.12 12.7 0.1 2.3 8.6 0.1 2.5 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0253) GerE PF00196.19 BAD86476.1 - 0.14 11.8 2.7 0.27 10.8 0.1 2.6 3 0 0 3 3 3 0 Bacterial regulatory proteins, luxR family TrmB PF01978.19 BAD86476.1 - 0.18 11.7 0.7 6.7 6.7 0.3 2.5 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB RB_B PF01857.20 BAD86476.1 - 0.18 11.9 0.1 0.32 11.0 0.1 1.5 1 0 0 1 1 1 0 Retinoblastoma-associated protein B domain zf-NADH-PPase PF09297.11 BAD86476.1 - 0.18 11.5 1.5 2 8.1 0.0 2.7 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain YhfH PF14149.6 BAD86476.1 - 0.5 10.4 1.7 6.1 6.9 0.2 2.3 2 0 0 2 2 2 0 YhfH-like protein Rubredoxin PF00301.20 BAD86476.1 - 0.65 10.1 2.8 8.2 6.5 0.1 2.5 1 1 1 2 2 2 0 Rubredoxin zf-RRN7 PF11781.8 BAD86476.1 - 1.1 9.0 3.7 6.4 6.6 3.7 2.0 1 1 0 1 1 1 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Metallophos_2 PF12850.7 BAD86477.1 - 1.3e-30 106.8 0.0 1.5e-30 106.6 0.0 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 BAD86477.1 - 9.4e-08 32.8 0.8 0.00012 22.7 0.0 2.2 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase CBFD_NFYB_HMF PF00808.23 BAD86478.1 - 5.7e-20 71.4 3.4 6.3e-20 71.2 3.4 1.0 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.24 BAD86478.1 - 3.6e-09 37.1 0.8 4e-09 36.9 0.8 1.1 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 TAF PF02969.17 BAD86478.1 - 5.3e-08 32.9 1.0 5.6e-08 32.8 1.0 1.1 1 0 0 1 1 1 1 TATA box binding protein associated factor (TAF) CENP-S PF15630.6 BAD86478.1 - 3.7e-06 27.2 0.1 4e-06 27.1 0.1 1.1 1 0 0 1 1 1 1 CENP-S protein CENP-T_C PF15511.6 BAD86478.1 - 4.1e-06 26.9 0.2 4.2e-06 26.8 0.2 1.1 1 0 0 1 1 1 1 Centromere kinetochore component CENP-T histone fold TFIID-31kDa PF02291.15 BAD86478.1 - 5.2e-05 23.3 0.1 5.7e-05 23.2 0.1 1.0 1 0 0 1 1 1 1 Transcription initiation factor IID, 31kD subunit TFIID-18kDa PF02269.16 BAD86478.1 - 0.0012 18.8 0.0 0.0013 18.7 0.0 1.1 1 0 0 1 1 1 1 Transcription initiation factor IID, 18kD subunit DUF1931 PF09123.11 BAD86478.1 - 0.0025 17.9 0.9 0.003 17.7 0.9 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1931) TFIID_20kDa PF03847.13 BAD86478.1 - 0.0088 16.5 0.2 0.0098 16.4 0.2 1.1 1 0 0 1 1 1 1 Transcription initiation factor TFIID subunit A Bromo_TP PF07524.13 BAD86478.1 - 0.015 15.3 0.0 0.017 15.1 0.0 1.1 1 0 0 1 1 1 0 Bromodomain associated AAA_lid_2 PF17863.1 BAD86478.1 - 0.03 14.1 2.2 0.04 13.8 0.4 1.9 1 1 1 2 2 2 0 AAA lid domain RuBisCO_large PF00016.20 BAD86479.1 - 6.1e-95 317.8 0.0 7.5e-95 317.6 0.0 1.1 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, catalytic domain RuBisCO_large_N PF02788.16 BAD86479.1 - 3.2e-45 153.1 0.0 9.2e-45 151.7 0.0 1.8 2 0 0 2 2 2 1 Ribulose bisphosphate carboxylase large chain, N-terminal domain LigA PF07746.11 BAD86479.1 - 0.094 12.9 0.1 2.6 8.2 0.0 2.4 2 0 0 2 2 2 0 Aromatic-ring-opening dioxygenase LigAB, LigA subunit HTH_5 PF01022.20 BAD86480.1 - 3e-14 52.6 0.2 6e-14 51.6 0.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 BAD86480.1 - 3.5e-13 49.4 1.2 6e-13 48.6 0.3 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain ArsR PF09824.9 BAD86480.1 - 3.8e-05 23.3 0.1 0.0023 17.5 0.0 2.2 2 0 0 2 2 2 1 ArsR transcriptional regulator HTH_24 PF13412.6 BAD86480.1 - 4.4e-05 23.0 1.5 0.0008 18.9 1.5 2.7 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding PadR PF03551.14 BAD86480.1 - 5.3e-05 23.1 0.2 0.00035 20.5 0.2 2.3 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family TrmB PF01978.19 BAD86480.1 - 7.1e-05 22.6 0.1 0.00018 21.3 0.1 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 BAD86480.1 - 8.5e-05 22.4 0.2 0.00021 21.1 0.2 1.6 1 0 0 1 1 1 1 MarR family HTH_CodY PF08222.11 BAD86480.1 - 0.0022 17.5 0.0 0.0049 16.4 0.0 1.5 1 0 0 1 1 1 1 CodY helix-turn-helix domain HTH_11 PF08279.12 BAD86480.1 - 0.0047 16.8 0.1 0.011 15.6 0.1 1.7 1 0 0 1 1 1 1 HTH domain PSY3 PF16836.5 BAD86480.1 - 0.012 15.1 0.0 0.016 14.7 0.0 1.1 1 0 0 1 1 1 0 Shu complex component Psy3, DNA-binding description MscS_porin PF12795.7 BAD86480.1 - 0.016 14.7 3.4 0.024 14.2 3.0 1.3 1 1 0 1 1 1 0 Mechanosensitive ion channel porin domain GntR PF00392.21 BAD86480.1 - 0.025 14.2 0.1 0.063 12.9 0.1 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Herpes_UL14 PF03580.14 BAD86480.1 - 0.029 14.6 1.8 2.4 8.4 0.7 2.1 2 0 0 2 2 2 0 Herpesvirus UL14-like protein DprA_WH PF17782.1 BAD86480.1 - 0.033 14.3 2.1 0.14 12.3 0.3 2.4 2 0 0 2 2 2 0 DprA winged helix domain HTH_10 PF04967.12 BAD86480.1 - 0.034 13.9 0.0 0.075 12.9 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain LexA_DNA_bind PF01726.16 BAD86480.1 - 0.038 13.8 0.1 0.16 11.7 0.0 2.1 2 0 0 2 2 2 0 LexA DNA binding domain HxlR PF01638.17 BAD86480.1 - 0.049 13.5 1.0 0.08 12.8 0.1 1.9 2 1 1 3 3 3 0 HxlR-like helix-turn-helix IF2_N PF04760.15 BAD86480.1 - 0.055 13.3 0.2 0.34 10.8 0.0 2.3 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region DUF4795 PF16043.5 BAD86480.1 - 0.083 12.5 6.0 0.12 12.0 6.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4795) DUF2205 PF10224.9 BAD86480.1 - 0.11 12.6 5.3 0.17 11.9 2.7 2.1 1 1 1 2 2 2 0 Short coiled-coil protein SMC_ScpB PF04079.16 BAD86480.1 - 0.24 11.0 4.8 3.1 7.4 0.1 2.2 2 0 0 2 2 2 0 Segregation and condensation complex subunit ScpB PCRF PF03462.18 BAD86480.1 - 1.7 8.5 4.8 2.4 8.0 4.8 1.2 1 0 0 1 1 1 0 PCRF domain Ribosomal_S17e PF00833.18 BAD86481.1 - 7.8e-17 61.3 0.9 9.1e-17 61.1 0.9 1.0 1 0 0 1 1 1 1 Ribosomal S17 MerR PF00376.23 BAD86481.1 - 0.031 14.0 0.0 0.054 13.3 0.0 1.4 1 0 0 1 1 1 0 MerR family regulatory protein DUF371 PF04027.13 BAD86482.1 - 1.3e-50 170.8 0.3 1.5e-50 170.6 0.3 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF371) Lambda_CIII PF02061.16 BAD86482.1 - 0.12 12.4 1.0 0.38 10.9 0.1 2.0 2 0 0 2 2 2 0 Lambda Phage CIII UPF0128 PF03673.13 BAD86483.1 - 8e-109 362.3 1.0 8.9e-109 362.1 1.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0128) DUF3368 PF11848.8 BAD86484.1 - 0.0028 17.4 0.0 0.0047 16.7 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF3368) Radical_SAM PF04055.21 BAD86485.1 - 3.2e-09 37.4 0.0 6.6e-09 36.4 0.0 1.5 2 0 0 2 2 2 1 Radical SAM superfamily Cas_Cas6 PF01881.16 BAD86485.1 - 0.022 15.3 0.1 0.072 13.6 0.0 1.8 2 0 0 2 2 2 0 CRISPR associated protein Cas6 SpoU_sub_bind PF08032.12 BAD86485.1 - 0.046 14.0 0.1 0.12 12.7 0.0 1.7 2 0 0 2 2 2 0 RNA 2'-O ribose methyltransferase substrate binding ARID PF01388.21 BAD86485.1 - 0.1 13.3 0.1 0.28 11.9 0.0 1.8 2 0 0 2 2 2 0 ARID/BRIGHT DNA binding domain Fer4_14 PF13394.6 BAD86485.1 - 0.18 12.0 0.8 1 9.5 0.3 2.4 2 1 0 2 2 2 0 4Fe-4S single cluster domain DUF1848 PF08902.11 BAD86485.1 - 2.3 7.8 5.2 18 5.0 3.7 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF1848) TPR_12 PF13424.6 BAD86486.1 - 7.7e-21 74.2 15.6 2.1e-10 40.8 1.3 4.3 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_7 PF13176.6 BAD86486.1 - 1.5e-16 59.1 8.9 0.00064 19.6 0.1 5.9 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_8 PF13181.6 BAD86486.1 - 1.2e-15 56.3 13.2 0.001 19.1 0.1 6.0 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_14 PF13428.6 BAD86486.1 - 1.7e-15 56.4 11.3 0.004 17.8 0.1 6.1 4 2 3 7 7 5 4 Tetratricopeptide repeat TPR_16 PF13432.6 BAD86486.1 - 1.1e-14 54.8 6.9 8.4e-07 29.5 0.0 3.7 4 0 0 4 4 3 2 Tetratricopeptide repeat TPR_2 PF07719.17 BAD86486.1 - 6.4e-14 50.9 26.6 0.00021 21.2 0.9 6.5 7 0 0 7 7 6 5 Tetratricopeptide repeat TPR_10 PF13374.6 BAD86486.1 - 3.8e-13 48.8 7.8 0.0021 17.9 0.4 5.7 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_6 PF13174.6 BAD86486.1 - 1.1e-12 47.7 7.7 0.00014 22.3 0.1 6.7 7 1 0 7 7 6 2 Tetratricopeptide repeat TPR_19 PF14559.6 BAD86486.1 - 2.6e-12 47.0 15.1 4.1e-05 24.0 0.6 5.7 3 2 3 6 6 6 3 Tetratricopeptide repeat TPR_1 PF00515.28 BAD86486.1 - 5.7e-12 44.9 18.7 0.0004 20.1 0.7 6.0 6 0 0 6 6 6 5 Tetratricopeptide repeat TPR_MalT PF17874.1 BAD86486.1 - 2.3e-08 33.8 0.0 3.6e-08 33.2 0.0 1.2 1 0 0 1 1 1 1 MalT-like TPR region TPR_17 PF13431.6 BAD86486.1 - 1.9e-07 31.0 5.9 0.081 13.3 0.1 5.6 5 1 0 5 5 5 2 Tetratricopeptide repeat NARP1 PF12569.8 BAD86486.1 - 9.3e-07 28.1 11.5 0.0014 17.6 1.1 3.3 1 1 2 3 3 3 3 NMDA receptor-regulated protein 1 ANAPC5 PF12862.7 BAD86486.1 - 1.5e-06 28.1 4.1 0.0056 16.7 0.4 3.9 1 1 2 3 3 3 2 Anaphase-promoting complex subunit 5 TPR_4 PF07721.14 BAD86486.1 - 6.4e-06 26.3 0.0 1.4 9.7 0.0 5.0 5 0 0 5 5 5 1 Tetratricopeptide repeat RPN7 PF10602.9 BAD86486.1 - 2.2e-05 24.2 12.1 0.0011 18.7 0.9 4.2 1 1 3 4 4 4 1 26S proteasome subunit RPN7 PPR PF01535.20 BAD86486.1 - 4.6e-05 23.4 11.2 2.5 8.6 0.0 6.5 7 0 0 7 7 5 2 PPR repeat TPR_15 PF13429.6 BAD86486.1 - 5.7e-05 22.5 9.9 0.023 13.9 0.2 4.2 1 1 1 3 3 3 1 Tetratricopeptide repeat TPR_21 PF09976.9 BAD86486.1 - 6e-05 22.8 6.1 0.0001 22.1 1.3 3.0 2 1 1 3 3 3 1 Tetratricopeptide repeat-like domain TPR_5 PF12688.7 BAD86486.1 - 0.00041 20.6 0.4 0.16 12.3 0.2 3.4 1 1 2 3 3 3 2 Tetratrico peptide repeat SNAP PF14938.6 BAD86486.1 - 0.00043 19.8 10.1 0.0015 18.0 5.1 3.1 2 1 0 2 2 2 1 Soluble NSF attachment protein, SNAP LppC PF04348.13 BAD86486.1 - 0.0014 17.6 0.1 0.002 17.0 0.1 1.2 1 0 0 1 1 1 1 LppC putative lipoprotein ANAPC3 PF12895.7 BAD86486.1 - 0.0036 17.5 9.7 0.94 9.8 0.3 3.9 1 1 2 4 4 4 2 Anaphase-promoting complex, cyclosome, subunit 3 MIT PF04212.18 BAD86486.1 - 0.0049 16.9 0.3 0.0049 16.9 0.3 4.4 3 1 1 4 4 3 1 MIT (microtubule interacting and transport) domain HrpB1_HrpK PF09613.10 BAD86486.1 - 0.012 15.3 0.1 0.07 12.8 0.0 2.3 2 0 0 2 2 2 0 Bacterial type III secretion protein (HrpB1_HrpK) DUF2225 PF09986.9 BAD86486.1 - 0.012 15.3 9.2 0.021 14.5 6.0 2.6 2 1 1 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2225) RhoGAP PF00620.27 BAD86486.1 - 0.018 14.9 0.5 0.018 14.9 0.5 2.1 3 0 0 3 3 1 0 RhoGAP domain TPR_11 PF13414.6 BAD86486.1 - 0.032 13.9 17.3 1.5 8.6 1.4 6.1 6 1 0 6 6 5 0 TPR repeat YfdX PF10938.8 BAD86486.1 - 0.052 13.5 2.5 13 5.7 0.0 3.5 1 1 3 4 4 4 0 YfdX protein DUF3856 PF12968.7 BAD86486.1 - 0.066 13.3 5.3 2.2 8.3 0.0 3.8 2 1 2 4 4 4 0 Domain of Unknown Function (DUF3856) SnoaL_3 PF13474.6 BAD86486.1 - 0.26 11.6 1.6 1.3 9.3 0.0 2.6 3 0 0 3 3 2 0 SnoaL-like domain Fis1_TPR_C PF14853.6 BAD86486.1 - 0.31 11.1 4.2 17 5.6 0.1 3.2 3 0 0 3 3 3 0 Fis1 C-terminal tetratricopeptide repeat DUF4326 PF14216.6 BAD86486.1 - 4.2 8.2 4.5 22 5.8 0.2 3.3 2 1 1 3 3 2 0 Domain of unknown function (DUF4326) NRDD PF13597.6 BAD86487.1 - 2.8e-150 501.8 0.0 3.2e-150 501.6 0.0 1.0 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase HypA PF01155.19 BAD86487.1 - 0.00097 19.1 0.1 0.0022 18.0 0.1 1.5 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TackOD1 PF18551.1 BAD86487.1 - 0.0062 16.2 0.0 0.011 15.5 0.0 1.3 1 0 0 1 1 1 1 Thaumarchaeal output domain 1 zf-ribbon_3 PF13248.6 BAD86487.1 - 0.014 14.8 2.5 0.025 14.0 2.5 1.4 1 0 0 1 1 1 0 zinc-ribbon domain DUF35_N PF12172.8 BAD86487.1 - 0.025 14.4 2.5 0.059 13.3 2.5 1.7 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Ribosomal_L32p PF01783.23 BAD86487.1 - 0.061 13.6 0.3 0.15 12.3 0.3 1.6 1 0 0 1 1 1 0 Ribosomal L32p protein family DUF3240 PF11582.8 BAD86487.1 - 0.067 13.3 0.0 0.22 11.7 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3240) DZR PF12773.7 BAD86487.1 - 0.068 13.2 0.2 0.13 12.3 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon Zn-ribbon_8 PF09723.10 BAD86487.1 - 0.16 12.1 3.4 0.46 10.6 3.4 1.8 1 1 0 1 1 1 0 Zinc ribbon domain Rubredoxin_2 PF18073.1 BAD86487.1 - 0.74 9.6 4.6 1.4 8.7 4.6 1.4 1 0 0 1 1 1 0 Rubredoxin metal binding domain Zn_Tnp_IS1595 PF12760.7 BAD86487.1 - 1.6 8.8 5.8 3.3 7.8 0.3 3.1 2 1 1 3 3 3 0 Transposase zinc-ribbon domain Radical_SAM PF04055.21 BAD86488.1 - 4.8e-15 56.3 0.5 1.3e-14 54.9 0.5 1.7 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 BAD86488.1 - 7.4e-09 36.0 0.0 1e-08 35.5 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 BAD86488.1 - 1.9e-05 24.7 0.2 4e-05 23.7 0.2 1.4 1 1 0 1 1 1 1 4Fe-4S single cluster domain PTH2 PF01981.16 BAD86489.1 - 1e-43 148.3 0.2 1.1e-43 148.2 0.2 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 Hydrolase_3 PF08282.12 BAD86490.1 - 2e-28 99.8 0.0 6.8e-19 68.6 0.0 2.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 BAD86490.1 - 2.8e-11 44.1 0.1 9e-11 42.5 0.1 2.2 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 BAD86490.1 - 0.0055 17.1 1.4 0.48 10.8 0.1 2.8 1 1 1 3 3 3 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 BAD86490.1 - 0.013 15.6 0.0 0.044 13.9 0.0 1.9 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 BAD86490.1 - 0.02 15.0 0.0 0.041 14.0 0.0 1.6 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase S6PP PF05116.13 BAD86490.1 - 0.053 13.1 0.0 1.2 8.6 0.0 2.2 2 1 0 2 2 2 0 Sucrose-6F-phosphate phosphohydrolase Peptidase_M55 PF04951.13 BAD86490.1 - 0.17 11.3 0.0 0.31 10.4 0.0 1.5 1 0 0 1 1 1 0 D-aminopeptidase TruD PF01142.18 BAD86491.1 - 2.2e-134 448.4 0.0 2.7e-134 448.1 0.0 1.0 1 0 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) Cpn60_TCP1 PF00118.24 BAD86492.1 - 1.8e-184 614.0 23.8 2.1e-184 613.8 23.8 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family baeRF_family10 PF18854.1 BAD86492.1 - 8.9 6.6 8.4 3.5 7.9 0.2 3.2 2 2 3 5 5 5 0 Bacterial archaeo-eukaryotic release factor family 10 Methyltr_RsmB-F PF01189.17 BAD86493.1 - 1.1e-48 165.6 0.0 1.6e-48 165.0 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F NusB PF01029.18 BAD86493.1 - 1.3e-19 70.8 0.2 2.5e-19 69.9 0.2 1.5 1 0 0 1 1 1 1 NusB family Methyltransf_31 PF13847.6 BAD86493.1 - 5.5e-15 55.5 0.1 5.1e-14 52.3 0.0 2.3 2 1 1 3 3 3 1 Methyltransferase domain Ubie_methyltran PF01209.18 BAD86493.1 - 1.3e-08 34.5 0.0 5.9e-08 32.3 0.0 2.0 1 1 1 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.6 BAD86493.1 - 4.5e-08 33.7 0.2 6.7e-07 29.9 0.0 2.9 2 1 0 2 2 2 1 Methyltransferase domain MTS PF05175.14 BAD86493.1 - 8.4e-07 28.7 0.0 0.00035 20.2 0.0 3.1 2 1 0 2 2 2 1 Methyltransferase small domain PCMT PF01135.19 BAD86493.1 - 4.7e-06 26.5 0.0 1.1e-05 25.3 0.0 1.6 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) FtsJ PF01728.19 BAD86493.1 - 0.0014 18.8 0.0 0.0029 17.7 0.0 1.5 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_11 PF08241.12 BAD86493.1 - 0.0017 19.0 0.0 0.0083 16.8 0.0 2.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltr_RsmF_N PF17125.5 BAD86493.1 - 0.0078 16.7 0.0 0.025 15.1 0.0 1.8 1 0 0 1 1 1 1 N-terminal domain of 16S rRNA methyltransferase RsmF Methyltransf_12 PF08242.12 BAD86493.1 - 0.019 15.7 0.1 0.2 12.4 0.0 2.6 2 1 0 2 2 2 0 Methyltransferase domain UPF0175 PF03683.13 BAD86494.1 - 3e-06 26.8 0.8 4.8e-06 26.2 0.8 1.3 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) DUF4088 PF13317.6 BAD86494.1 - 0.084 12.4 0.4 0.096 12.2 0.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4088) DUF3368 PF11848.8 BAD86495.1 - 1e-08 34.8 0.1 1e-08 34.8 0.1 2.4 3 0 0 3 3 3 1 Domain of unknown function (DUF3368) CtsR_C PF17727.1 BAD86495.1 - 0.039 14.1 0.0 2.5 8.3 0.0 2.3 2 0 0 2 2 2 0 CtsR C-terminal dimerization domain PPR PF01535.20 BAD86495.1 - 0.059 13.7 0.1 0.26 11.6 0.0 2.1 2 0 0 2 2 2 0 PPR repeat DUF1204 PF06721.11 BAD86495.1 - 0.11 11.9 0.2 0.28 10.6 0.1 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1204) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Thermococcus_kodakarensis_KOD1-ASM996v1/GCA_000009965.1_ASM996v1_protein.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Thermococcus_kodakarensis_KOD1-ASM996v1/GCA_000009965.1_ASM996v1_protein.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Thermococcus_kodakarensis_KOD1-ASM996v1/GCA_000009965.1_ASM996v1_protein.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Thermococcus_kodakarensis_KOD1-ASM996v1/GCA_000009965.1_ASM996v1_protein.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Sun Mar 24 01:44:57 2019 # [ok]