#                                                                           --- full sequence ---- --- best 1 domain ---- --- domain number estimation ----
# target name        accession  query name                       accession    E-value  score  bias   E-value  score  bias   exp reg clu  ov env dom rep inc description of target
#------------------- ----------             -------------------- ---------- --------- ------ ----- --------- ------ -----   --- --- --- --- --- --- --- --- ---------------------
Cdc6_C	PF09079.6	gi|408402625|ref|YP_006860608.1|	-	3.5e-21	74.7	0.3	1.2e-20	72.9	0.2	2.0	1	0	0	1	1	1	1	CDC6,	C	terminal
AAA	PF00004.24	gi|408402625|ref|YP_006860608.1|	-	4.3e-14	52.8	0.2	1.6e-13	51.0	0.1	2.0	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_22	PF13401.1	gi|408402625|ref|YP_006860608.1|	-	8.8e-14	51.7	0.1	6.6e-13	48.9	0.0	2.3	3	0	0	3	3	2	1	AAA	domain
AAA_16	PF13191.1	gi|408402625|ref|YP_006860608.1|	-	2.5e-11	43.9	0.7	1.6e-10	41.2	0.0	2.6	2	2	0	2	2	2	1	AAA	ATPase	domain
Arch_ATPase	PF01637.13	gi|408402625|ref|YP_006860608.1|	-	4.6e-07	29.7	0.7	9.7e-07	28.7	0.2	1.7	2	0	0	2	2	2	1	Archaeal	ATPase
NB-ARC	PF00931.17	gi|408402625|ref|YP_006860608.1|	-	1.9e-06	26.9	0.3	3e-06	26.3	0.2	1.3	1	0	0	1	1	1	1	NB-ARC	domain
DUF815	PF05673.8	gi|408402625|ref|YP_006860608.1|	-	6.6e-05	21.9	0.3	0.0004	19.3	0.0	2.1	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF815)
KAP_NTPase	PF07693.9	gi|408402625|ref|YP_006860608.1|	-	0.0001	21.4	0.8	0.075	12.0	0.0	2.3	1	1	1	2	2	2	2	KAP	family	P-loop	domain
NACHT	PF05729.7	gi|408402625|ref|YP_006860608.1|	-	0.00027	20.6	0.1	0.00078	19.1	0.0	1.8	1	1	0	1	1	1	1	NACHT	domain
Zeta_toxin	PF06414.7	gi|408402625|ref|YP_006860608.1|	-	0.00035	19.7	0.1	0.0014	17.7	0.1	2.0	1	1	0	1	1	1	1	Zeta	toxin
AAA_19	PF13245.1	gi|408402625|ref|YP_006860608.1|	-	0.0011	18.6	0.0	0.0033	17.1	0.0	1.8	1	0	0	1	1	1	1	Part	of	AAA	domain
AAA_18	PF13238.1	gi|408402625|ref|YP_006860608.1|	-	0.0011	19.2	0.1	0.0029	17.9	0.0	1.8	1	0	0	1	1	1	1	AAA	domain
Mg_chelatase	PF01078.16	gi|408402625|ref|YP_006860608.1|	-	0.0018	17.4	0.0	0.0045	16.1	0.0	1.6	1	0	0	1	1	1	1	Magnesium	chelatase,	subunit	ChlI
AAA_10	PF12846.2	gi|408402625|ref|YP_006860608.1|	-	0.0021	17.5	0.3	0.99	8.7	0.0	3.1	2	1	1	3	3	3	1	AAA-like	domain
AAA_5	PF07728.9	gi|408402625|ref|YP_006860608.1|	-	0.0023	17.6	0.0	0.017	14.8	0.0	2.3	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
AAA_17	PF13207.1	gi|408402625|ref|YP_006860608.1|	-	0.0025	18.6	0.0	0.01	16.6	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
DUF2075	PF09848.4	gi|408402625|ref|YP_006860608.1|	-	0.0027	16.7	0.1	0.0037	16.2	0.1	1.3	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2075)
AAA_2	PF07724.9	gi|408402625|ref|YP_006860608.1|	-	0.0067	16.3	0.1	0.016	15.1	0.1	1.6	1	0	0	1	1	1	1	AAA	domain	(Cdc48	subfamily)
NTPase_1	PF03266.10	gi|408402625|ref|YP_006860608.1|	-	0.0089	15.7	0.7	0.037	13.7	0.4	1.9	1	1	0	1	1	1	1	NTPase
RNA_helicase	PF00910.17	gi|408402625|ref|YP_006860608.1|	-	0.0094	16.1	0.0	0.022	14.9	0.0	1.8	1	1	0	1	1	1	1	RNA	helicase
Sigma54_activat	PF00158.21	gi|408402625|ref|YP_006860608.1|	-	0.013	14.9	0.0	0.041	13.3	0.0	1.8	2	0	0	2	2	1	0	Sigma-54	interaction	domain
KaiC	PF06745.8	gi|408402625|ref|YP_006860608.1|	-	0.014	14.5	1.0	0.082	12.0	0.7	2.2	1	1	0	1	1	1	0	KaiC
RuvB_N	PF05496.7	gi|408402625|ref|YP_006860608.1|	-	0.014	14.4	0.3	0.96	8.4	0.0	3.0	3	0	0	3	3	3	0	Holliday	junction	DNA	helicase	ruvB	N-terminus
ResIII	PF04851.10	gi|408402625|ref|YP_006860608.1|	-	0.016	15.0	0.1	0.1	12.4	0.0	2.1	1	1	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
AAA_32	PF13654.1	gi|408402625|ref|YP_006860608.1|	-	0.018	13.7	0.6	2.3	6.7	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
AAA_25	PF13481.1	gi|408402625|ref|YP_006860608.1|	-	0.027	13.8	0.8	0.14	11.5	0.1	2.4	2	1	0	2	2	2	0	AAA	domain
PBP_dimer	PF03717.10	gi|408402625|ref|YP_006860608.1|	-	0.029	14.4	0.2	0.065	13.2	0.0	1.7	2	0	0	2	2	1	0	Penicillin-binding	Protein	dimerisation	domain
IstB_IS21	PF01695.12	gi|408402625|ref|YP_006860608.1|	-	0.034	13.5	0.1	0.12	11.7	0.0	1.9	2	1	0	2	2	2	0	IstB-like	ATP	binding	protein
AAA_33	PF13671.1	gi|408402625|ref|YP_006860608.1|	-	0.034	14.0	0.5	0.24	11.2	0.0	2.4	2	1	0	2	2	2	0	AAA	domain
AAA_24	PF13479.1	gi|408402625|ref|YP_006860608.1|	-	0.035	13.6	0.4	0.11	12.1	0.3	2.0	1	1	0	1	1	1	0	AAA	domain
KTI12	PF08433.5	gi|408402625|ref|YP_006860608.1|	-	0.062	12.5	0.0	0.13	11.4	0.0	1.5	1	0	0	1	1	1	0	Chromatin	associated	protein	KTI12
ABC_tran	PF00005.22	gi|408402625|ref|YP_006860608.1|	-	0.11	12.8	0.2	0.57	10.4	0.1	2.2	2	2	0	2	2	2	0	ABC	transporter
DNA_pol_E_B	PF04042.11	gi|408402626|ref|YP_006860609.1|	-	6.5e-18	64.7	0.0	1.1e-17	64.0	0.0	1.4	1	0	0	1	1	1	1	DNA	polymerase	alpha/epsilon	subunit	B
Metallophos_2	PF12850.2	gi|408402626|ref|YP_006860609.1|	-	2.2e-11	43.8	0.0	3.8e-11	43.0	0.0	1.3	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.23	gi|408402626|ref|YP_006860609.1|	-	0.00029	20.3	0.8	0.00079	18.8	0.5	1.8	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
tRNA_anti-codon	PF01336.20	gi|408402626|ref|YP_006860609.1|	-	0.028	14.2	0.0	0.054	13.3	0.0	1.5	1	0	0	1	1	1	0	OB-fold	nucleic	acid	binding	domain
Peptidase_S26	PF10502.4	gi|408402627|ref|YP_006860610.1|	-	0.012	15.1	0.1	0.025	14.0	0.1	1.6	1	0	0	1	1	1	0	Signal	peptidase,	peptidase	S26
DUF769	PF05590.6	gi|408402627|ref|YP_006860610.1|	-	0.016	14.4	0.5	0.05	12.8	0.2	1.9	2	0	0	2	2	2	0	Xylella	fastidiosa	protein	of	unknown	function	(DUF769)
COX15-CtaA	PF02628.10	gi|408402628|ref|YP_006860611.1|	-	6.6e-21	74.4	10.9	1e-20	73.8	7.6	1.3	1	1	0	1	1	1	1	Cytochrome	oxidase	assembly	protein
MARVEL	PF01284.18	gi|408402628|ref|YP_006860611.1|	-	0.027	14.2	9.0	0.13	12.0	0.0	2.1	2	0	0	2	2	2	0	Membrane-associating	domain
DUF368	PF04018.8	gi|408402628|ref|YP_006860611.1|	-	0.033	13.3	5.7	0.07	12.3	3.9	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF368)
Frag1	PF10277.4	gi|408402628|ref|YP_006860611.1|	-	0.051	13.0	7.4	0.066	12.6	5.1	1.1	1	0	0	1	1	1	0	Frag1/DRAM/Sfk1	family
Rieske_2	PF13806.1	gi|408402628|ref|YP_006860611.1|	-	0.11	12.2	0.0	0.15	11.7	0.0	1.2	1	0	0	1	1	1	0	Rieske-like	[2Fe-2S]	domain
7TMR-DISM_7TM	PF07695.6	gi|408402628|ref|YP_006860611.1|	-	0.12	11.9	11.7	0.18	11.4	8.1	1.3	1	1	0	1	1	1	0	7TM	diverse	intracellular	signalling
DUF4079	PF13301.1	gi|408402628|ref|YP_006860611.1|	-	0.15	12.0	8.8	0.22	11.5	6.1	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF4079)
DUF3796	PF12676.2	gi|408402628|ref|YP_006860611.1|	-	5.2	7.3	6.5	1.8	8.7	2.7	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3796)
Response_reg	PF00072.19	gi|408402629|ref|YP_006860612.1|	-	2.5e-13	49.9	0.0	2.7e-13	49.8	0.0	1.1	1	0	0	1	1	1	1	Response	regulator	receiver	domain
Mistic	PF11458.3	gi|408402630|ref|YP_006860613.1|	-	0.077	13.4	0.3	0.093	13.1	0.2	1.1	1	0	0	1	1	1	0	Membrane-integrating	protein	Mistic
Guanylate_cyc	PF00211.15	gi|408402631|ref|YP_006860614.1|	-	3e-19	69.0	0.0	7.1e-19	67.8	0.0	1.6	1	0	0	1	1	1	1	Adenylate	and	Guanylate	cyclase	catalytic	domain
MgtE_N	PF03448.12	gi|408402631|ref|YP_006860614.1|	-	0.057	13.7	0.8	0.34	11.2	0.1	2.2	1	1	1	2	2	2	0	MgtE	intracellular	N	domain
HTH_7	PF02796.10	gi|408402631|ref|YP_006860614.1|	-	0.14	12.0	0.1	0.51	10.2	0.0	2.0	3	0	0	3	3	3	0	Helix-turn-helix	domain	of	resolvase
TFIIE_alpha	PF02002.12	gi|408402632|ref|YP_006860615.1|	-	1.8e-20	72.4	1.4	1.8e-20	72.4	1.0	1.9	2	0	0	2	2	2	1	TFIIE	alpha	subunit
HTH_9	PF08221.6	gi|408402632|ref|YP_006860615.1|	-	0.052	13.4	0.0	0.1	12.4	0.0	1.4	1	0	0	1	1	1	0	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
Elf1	PF05129.8	gi|408402633|ref|YP_006860616.1|	-	0.17	11.6	3.8	0.23	11.1	2.6	1.4	1	1	0	1	1	1	0	Transcription	elongation	factor	Elf1	like
UDG	PF03167.14	gi|408402634|ref|YP_006860617.1|	-	1.1e-30	106.0	0.0	1.5e-30	105.6	0.0	1.1	1	0	0	1	1	1	1	Uracil	DNA	glycosylase	superfamily
HTH_3	PF01381.17	gi|408402635|ref|YP_006860618.1|	-	3e-10	39.8	0.0	4.6e-10	39.1	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix
HTH_19	PF12844.2	gi|408402635|ref|YP_006860618.1|	-	1.6e-09	37.6	0.0	2.2e-09	37.2	0.0	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_31	PF13560.1	gi|408402635|ref|YP_006860618.1|	-	4e-08	33.3	0.0	5.5e-08	32.9	0.0	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_37	PF13744.1	gi|408402635|ref|YP_006860618.1|	-	0.0033	17.1	0.0	0.0048	16.6	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
DUF3606	PF12244.3	gi|408402635|ref|YP_006860618.1|	-	0.014	15.0	0.0	0.024	14.2	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3606)
HTH_26	PF13443.1	gi|408402635|ref|YP_006860618.1|	-	0.034	14.3	0.0	0.046	13.9	0.0	1.3	1	0	0	1	1	1	0	Cro/C1-type	HTH	DNA-binding	domain
MerR_1	PF13411.1	gi|408402635|ref|YP_006860618.1|	-	0.043	13.5	0.0	5.2	6.9	0.0	2.2	1	1	1	2	2	2	0	MerR	HTH	family	regulatory	protein
HTH_Tnp_1	PF01527.15	gi|408402635|ref|YP_006860618.1|	-	0.084	12.8	0.2	1.2	9.1	0.0	2.5	1	1	1	2	2	2	0	Transposase
Tautomerase	PF01361.16	gi|408402636|ref|YP_006860619.1|	-	5e-12	45.2	0.0	5.2e-12	45.1	0.0	1.0	1	0	0	1	1	1	1	Tautomerase	enzyme
Tautomerase_2	PF14552.1	gi|408402636|ref|YP_006860619.1|	-	9.4e-09	35.1	0.0	1e-08	35.0	0.0	1.0	1	0	0	1	1	1	1	Tautomerase	enzyme
Tautomerase_3	PF14832.1	gi|408402636|ref|YP_006860619.1|	-	0.041	13.8	0.0	0.047	13.7	0.0	1.0	1	0	0	1	1	1	0	Putative	oxalocrotonate	tautomerase	enzyme
Ketoacyl-synt_2	PF13723.1	gi|408402636|ref|YP_006860619.1|	-	0.045	13.0	0.0	0.047	12.9	0.0	1.0	1	0	0	1	1	1	0	Beta-ketoacyl	synthase,	N-terminal	domain
DUF1904	PF08921.6	gi|408402636|ref|YP_006860619.1|	-	0.13	12.3	0.0	0.14	12.2	0.0	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1904)
CN_hydrolase	PF00795.17	gi|408402638|ref|YP_006860621.1|	-	1.2e-32	112.7	0.0	1.7e-32	112.2	0.0	1.2	1	0	0	1	1	1	1	Carbon-nitrogen	hydrolase
Topoisom_bac	PF01131.15	gi|408402639|ref|YP_006860622.1|	-	4.1e-102	342.0	0.0	5.4e-102	341.6	0.0	1.1	1	0	0	1	1	1	1	DNA	topoisomerase
Toprim	PF01751.17	gi|408402639|ref|YP_006860622.1|	-	8.9e-13	48.0	0.0	1.7e-12	47.1	0.0	1.5	1	0	0	1	1	1	1	Toprim	domain
zf-C4_Topoisom	PF01396.14	gi|408402639|ref|YP_006860622.1|	-	0.00014	21.2	7.4	0.00098	18.5	2.2	2.5	2	0	0	2	2	2	2	Topoisomerase	DNA	binding	C4	zinc	finger
Auto_anti-p27	PF06677.7	gi|408402639|ref|YP_006860622.1|	-	0.055	13.2	0.9	0.3	10.8	0.0	2.3	2	0	0	2	2	2	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
Phycobilisome	PF00502.14	gi|408402640|ref|YP_006860623.1|	-	0.022	14.5	0.0	0.024	14.4	0.0	1.1	1	0	0	1	1	1	0	Phycobilisome	protein
DUF1456	PF07308.8	gi|408402641|ref|YP_006860624.1|	-	0.00095	19.1	0.1	0.002	18.1	0.1	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1456)
TrmB	PF01978.14	gi|408402641|ref|YP_006860624.1|	-	0.021	14.5	0.4	0.068	12.8	0.2	1.9	1	1	1	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_36	PF13730.1	gi|408402641|ref|YP_006860624.1|	-	0.13	12.3	0.3	0.61	10.2	0.0	2.1	2	1	0	2	2	2	0	Helix-turn-helix	domain
HTH_45	PF14947.1	gi|408402641|ref|YP_006860624.1|	-	0.14	12.0	1.9	0.27	11.0	0.7	1.8	1	1	1	2	2	2	0	Winged	helix-turn-helix
HTH_12	PF08461.5	gi|408402641|ref|YP_006860624.1|	-	0.46	10.2	2.2	1.6	8.5	0.1	2.6	2	2	1	3	3	3	0	Ribonuclease	R	winged-helix	domain
Thiolase_C	PF02803.13	gi|408402642|ref|YP_006860625.1|	-	3.1e-12	45.9	1.0	3.2e-08	33.0	0.0	3.5	2	2	1	3	3	3	2	Thiolase,	C-terminal	domain
Thiolase_N	PF00108.18	gi|408402642|ref|YP_006860625.1|	-	3.2e-09	36.1	0.1	3.1e-08	32.9	0.1	2.4	3	0	0	3	3	3	1	Thiolase,	N-terminal	domain
ketoacyl-synt	PF00109.21	gi|408402642|ref|YP_006860625.1|	-	4.6e-05	23.0	2.5	0.023	14.1	0.5	2.6	2	1	1	3	3	3	2	Beta-ketoacyl	synthase,	N-terminal	domain
Ketoacyl-synt_C	PF02801.17	gi|408402642|ref|YP_006860625.1|	-	0.0055	16.5	1.2	0.29	10.9	0.0	3.1	3	0	0	3	3	3	1	Beta-ketoacyl	synthase,	C-terminal	domain
ACP_syn_III	PF08545.5	gi|408402642|ref|YP_006860625.1|	-	0.056	13.1	0.2	11	5.7	0.1	2.8	2	0	0	2	2	2	0	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III
DUF35	PF01796.12	gi|408402643|ref|YP_006860626.1|	-	1.6e-07	31.4	0.3	2.1e-07	31.0	0.2	1.1	1	0	0	1	1	1	1	DUF35	OB-fold	domain
zinc_ribbon_2	PF13240.1	gi|408402643|ref|YP_006860626.1|	-	0.00065	19.1	1.1	0.001	18.5	0.8	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
FYVE	PF01363.16	gi|408402643|ref|YP_006860626.1|	-	0.0047	16.8	0.1	0.0053	16.6	0.1	1.2	1	0	0	1	1	1	1	FYVE	zinc	finger
DUF35_N	PF12172.3	gi|408402643|ref|YP_006860626.1|	-	0.046	13.6	0.0	0.088	12.7	0.0	1.5	1	0	0	1	1	1	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
DZR	PF12773.2	gi|408402643|ref|YP_006860626.1|	-	0.056	13.2	0.4	0.081	12.7	0.3	1.2	1	0	0	1	1	1	0	Double	zinc	ribbon
DUF2072	PF09845.4	gi|408402643|ref|YP_006860626.1|	-	0.15	11.9	0.6	0.2	11.5	0.4	1.3	1	0	0	1	1	1	0	Zn-ribbon	containing	protein	(DUF2072)
BssC_TutF	PF08201.6	gi|408402644|ref|YP_006860627.1|	-	0.12	11.8	0.9	0.15	11.5	0.6	1.2	1	0	0	1	1	1	0	BssC/TutF	protein
TF_Zn_Ribbon	PF08271.7	gi|408402645|ref|YP_006860628.1|	-	0.00011	21.4	0.6	0.061	12.6	0.1	2.1	2	0	0	2	2	2	2	TFIIB	zinc-binding
zf-ribbon_3	PF13248.1	gi|408402645|ref|YP_006860628.1|	-	0.0014	17.7	3.4	0.11	11.7	0.3	2.1	2	0	0	2	2	2	2	zinc-ribbon	domain
Prok-RING_1	PF14446.1	gi|408402645|ref|YP_006860628.1|	-	0.0017	18.0	0.3	0.28	10.9	0.0	2.1	2	0	0	2	2	2	1	Prokaryotic	RING	finger	family	1
Rad50_zn_hook	PF04423.9	gi|408402645|ref|YP_006860628.1|	-	0.0017	17.7	0.0	0.0029	17.0	0.0	1.6	1	1	0	1	1	1	1	Rad50	zinc	hook	motif
DZR	PF12773.2	gi|408402645|ref|YP_006860628.1|	-	0.0019	17.9	0.5	0.0046	16.7	0.3	1.6	1	1	0	1	1	1	1	Double	zinc	ribbon
zf-NADH-PPase	PF09297.6	gi|408402645|ref|YP_006860628.1|	-	0.0032	16.9	2.0	0.36	10.3	0.1	2.2	2	0	0	2	2	2	2	NADH	pyrophosphatase	zinc	ribbon	domain
zinc_ribbon_2	PF13240.1	gi|408402645|ref|YP_006860628.1|	-	0.0043	16.4	0.5	0.4	10.2	0.0	2.1	2	0	0	2	2	2	1	zinc-ribbon	domain
RRN7	PF11781.3	gi|408402645|ref|YP_006860628.1|	-	0.0095	15.4	0.4	3.3	7.2	0.1	2.1	2	0	0	2	2	2	2	RNA	polymerase	I-specific	transcription	initiation	factor	Rrn7
zf-4CXXC_R1	PF10497.4	gi|408402645|ref|YP_006860628.1|	-	0.017	15.2	0.1	0.018	15.1	0.1	1.1	1	0	0	1	1	1	0	Zinc-finger	domain	of	monoamine-oxidase	A	repressor	R1
Rtf2	PF04641.7	gi|408402645|ref|YP_006860628.1|	-	0.019	14.2	0.3	0.019	14.1	0.2	1.0	1	0	0	1	1	1	0	Rtf2	RING-finger
zf-C3HC4_3	PF13920.1	gi|408402645|ref|YP_006860628.1|	-	0.027	14.1	1.9	0.048	13.3	1.3	1.4	1	1	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
Zn-ribbon_8	PF09723.5	gi|408402645|ref|YP_006860628.1|	-	0.035	14.0	1.9	0.58	10.1	1.3	2.1	1	1	0	1	1	1	0	Zinc	ribbon	domain
Nudix_N_2	PF14803.1	gi|408402645|ref|YP_006860628.1|	-	0.035	13.7	4.3	0.63	9.7	0.5	2.2	2	0	0	2	2	2	0	Nudix	N-terminal
Rubredoxin	PF00301.15	gi|408402645|ref|YP_006860628.1|	-	0.036	13.9	0.3	2.1	8.2	0.1	2.1	2	0	0	2	2	2	0	Rubredoxin
DNA_RNApol_7kD	PF03604.8	gi|408402645|ref|YP_006860628.1|	-	0.036	13.5	1.0	0.9	9.0	0.1	2.3	2	0	0	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
DNA_ligase_ZBD	PF03119.11	gi|408402645|ref|YP_006860628.1|	-	0.047	13.4	2.8	0.16	11.6	0.2	2.3	2	1	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
Zn_Tnp_IS1595	PF12760.2	gi|408402645|ref|YP_006860628.1|	-	0.067	13.0	2.5	2.3	8.0	0.1	2.1	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
zf-ISL3	PF14690.1	gi|408402645|ref|YP_006860628.1|	-	0.068	13.2	0.4	6	6.9	0.0	2.1	2	0	0	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
GFA	PF04828.9	gi|408402645|ref|YP_006860628.1|	-	0.077	12.9	0.9	6.5	6.7	0.0	2.1	1	1	1	2	2	2	0	Glutathione-dependent	formaldehyde-activating	enzyme
OrfB_Zn_ribbon	PF07282.6	gi|408402645|ref|YP_006860628.1|	-	0.092	12.4	0.6	0.45	10.2	0.5	1.8	1	1	1	2	2	2	0	Putative	transposase	DNA-binding	domain
ADK_lid	PF05191.9	gi|408402645|ref|YP_006860628.1|	-	0.097	12.3	0.6	5.2	6.8	0.1	2.1	2	0	0	2	2	2	0	Adenylate	kinase,	active	site	lid
zf-CHY	PF05495.7	gi|408402645|ref|YP_006860628.1|	-	0.098	12.8	0.3	0.11	12.6	0.2	1.1	1	0	0	1	1	1	0	CHY	zinc	finger
A2L_zn_ribbon	PF08792.5	gi|408402645|ref|YP_006860628.1|	-	0.1	12.0	0.8	2.2	7.8	0.1	2.1	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
zf-IS66	PF13005.2	gi|408402645|ref|YP_006860628.1|	-	0.11	12.4	0.2	2	8.4	0.0	2.1	2	0	0	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
zf-TFIIB	PF13453.1	gi|408402645|ref|YP_006860628.1|	-	0.14	11.3	0.3	0.77	9.0	0.0	2.0	2	0	0	2	2	2	0	Transcription	factor	zinc-finger
Lar_restr_allev	PF14354.1	gi|408402645|ref|YP_006860628.1|	-	0.2	12.0	3.0	7	7.0	0.0	2.1	1	1	1	2	2	2	0	Restriction	alleviation	protein	Lar
DUF35_N	PF12172.3	gi|408402645|ref|YP_006860628.1|	-	0.2	11.5	1.5	10	6.1	0.2	2.1	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
zf-Sec23_Sec24	PF04810.10	gi|408402645|ref|YP_006860628.1|	-	0.24	11.0	3.7	0.82	9.2	0.6	2.1	2	0	0	2	2	2	0	Sec23/Sec24	zinc	finger
Zn_ribbon_recom	PF13408.1	gi|408402645|ref|YP_006860628.1|	-	0.28	11.4	3.9	2.3	8.5	0.6	2.1	1	1	1	2	2	2	0	Recombinase	zinc	beta	ribbon	domain
Transport_MerF	PF11431.3	gi|408402646|ref|YP_006860629.1|	-	0.0019	17.7	0.2	0.0019	17.7	0.1	1.9	2	0	0	2	2	2	1	Membrane	transport	protein	MerF
Choline_transpo	PF04515.7	gi|408402646|ref|YP_006860629.1|	-	0.046	12.4	0.9	0.76	8.4	0.0	2.3	2	1	0	2	2	2	0	Plasma-membrane	choline	transporter
MerC	PF03203.9	gi|408402646|ref|YP_006860629.1|	-	1.1	9.7	5.4	5.8	7.3	0.3	2.7	2	1	0	3	3	3	0	MerC	mercury	resistance	protein
Snf7	PF03357.16	gi|408402647|ref|YP_006860630.1|	-	7.3e-06	25.4	0.3	1.8e-05	24.2	0.2	1.6	1	1	0	1	1	1	1	Snf7
Ppx-GppA	PF02541.11	gi|408402647|ref|YP_006860630.1|	-	0.0014	17.8	0.8	0.0025	17.0	0.6	1.4	1	0	0	1	1	1	1	Ppx/GppA	phosphatase	family
MCM_N	PF14551.1	gi|408402647|ref|YP_006860630.1|	-	0.0041	17.6	0.1	0.0054	17.2	0.1	1.2	1	0	0	1	1	1	1	MCM	N-terminal	domain
NRDD	PF13597.1	gi|408402648|ref|YP_006860631.1|	-	2.6e-18	65.4	0.0	4.9e-18	64.5	0.0	1.4	1	0	0	1	1	1	1	Anaerobic	ribonucleoside-triphosphate	reductase
ATP-cone	PF03477.11	gi|408402648|ref|YP_006860631.1|	-	1.3e-09	38.3	0.3	5e-09	36.4	0.2	2.0	1	0	0	1	1	1	1	ATP	cone	domain
HTH_20	PF12840.2	gi|408402648|ref|YP_006860631.1|	-	3.3e-09	36.4	0.0	1.2e-08	34.6	0.0	2.1	2	0	0	2	2	2	1	Helix-turn-helix	domain
Ribonuc_red_lgC	PF02867.10	gi|408402649|ref|YP_006860632.1|	-	1.2e-159	532.4	0.0	4.7e-159	530.4	0.0	2.0	2	0	0	2	2	2	1	Ribonucleotide	reductase,	barrel	domain
Ribonuc_red_lgN	PF00317.16	gi|408402649|ref|YP_006860632.1|	-	8.3e-30	102.4	0.2	2.7e-29	100.7	0.2	2.0	1	0	0	1	1	1	1	Ribonucleotide	reductase,	all-alpha	domain
ATP-cone	PF03477.11	gi|408402649|ref|YP_006860632.1|	-	5e-23	81.3	3.1	8.1e-23	80.6	0.7	2.4	2	0	0	2	2	2	1	ATP	cone	domain
Hormone_3	PF00159.13	gi|408402649|ref|YP_006860632.1|	-	9.5	6.3	7.4	0.73	9.8	0.5	2.7	3	0	0	3	3	3	0	Pancreatic	hormone	peptide
MarR_2	PF12802.2	gi|408402650|ref|YP_006860633.1|	-	0.0072	15.9	0.0	0.012	15.2	0.0	1.3	1	0	0	1	1	1	1	MarR	family
TFIIE_alpha	PF02002.12	gi|408402650|ref|YP_006860633.1|	-	0.0094	15.4	0.2	0.017	14.6	0.1	1.3	1	1	0	1	1	1	1	TFIIE	alpha	subunit
Rio2_N	PF09202.6	gi|408402650|ref|YP_006860633.1|	-	0.017	15.1	0.0	0.03	14.4	0.0	1.4	1	0	0	1	1	1	0	Rio2,	N-terminal
HTH_29	PF13551.1	gi|408402650|ref|YP_006860633.1|	-	0.06	13.4	0.0	0.12	12.5	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn	helix
HTH_IclR	PF09339.5	gi|408402650|ref|YP_006860633.1|	-	0.092	12.3	0.0	0.15	11.6	0.0	1.3	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
DUF2802	PF10975.3	gi|408402650|ref|YP_006860633.1|	-	0.4	10.4	2.2	8.4	6.2	0.0	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2802)
ABC-3	PF00950.12	gi|408402651|ref|YP_006860634.1|	-	4.3e-29	101.5	20.1	4.7e-29	101.4	13.9	1.0	1	0	0	1	1	1	1	ABC	3	transport	family
FecCD	PF01032.13	gi|408402651|ref|YP_006860634.1|	-	3.3e-06	26.1	17.1	3.8e-06	25.9	11.8	1.1	1	0	0	1	1	1	1	FecCD	transport	family
FixQ	PF05545.6	gi|408402651|ref|YP_006860634.1|	-	0.09	12.4	0.1	0.33	10.6	0.1	2.0	1	0	0	1	1	1	0	Cbb3-type	cytochrome	oxidase	component	FixQ
Glycoprotein_B	PF00606.13	gi|408402651|ref|YP_006860634.1|	-	0.54	8.2	2.4	0.68	7.8	1.7	1.1	1	0	0	1	1	1	0	Herpesvirus	Glycoprotein	B
DUF4181	PF13789.1	gi|408402651|ref|YP_006860634.1|	-	0.89	9.5	9.3	0.25	11.2	0.5	2.5	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF4181)
SPC12	PF06645.8	gi|408402651|ref|YP_006860634.1|	-	1.5	8.7	8.7	4.7	7.0	1.6	2.5	2	0	0	2	2	2	0	Microsomal	signal	peptidase	12	kDa	subunit	(SPC12)
RseC_MucC	PF04246.7	gi|408402651|ref|YP_006860634.1|	-	3.8	7.0	8.6	0.19	11.2	1.0	2.1	1	1	1	2	2	2	0	Positive	regulator	of	sigma(E),	RseC/MucC
ABC_tran	PF00005.22	gi|408402652|ref|YP_006860635.1|	-	1.5e-29	103.0	0.4	4.4e-29	101.5	0.1	1.7	2	0	0	2	2	2	1	ABC	transporter
AAA_21	PF13304.1	gi|408402652|ref|YP_006860635.1|	-	6.2e-12	46.0	0.2	2.2e-09	37.6	0.2	2.1	1	1	0	1	1	1	1	AAA	domain
AAA_15	PF13175.1	gi|408402652|ref|YP_006860635.1|	-	9.6e-06	24.8	1.0	0.00018	20.6	0.2	2.1	1	1	1	2	2	2	1	AAA	ATPase	domain
AAA_23	PF13476.1	gi|408402652|ref|YP_006860635.1|	-	9e-05	22.8	0.3	0.00014	22.2	0.2	1.3	1	0	0	1	1	1	1	AAA	domain
SMC_N	PF02463.14	gi|408402652|ref|YP_006860635.1|	-	0.00096	18.4	0.7	0.0031	16.7	0.5	1.8	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
SbcCD_C	PF13558.1	gi|408402652|ref|YP_006860635.1|	-	0.016	15.0	0.1	0.79	9.6	0.0	2.4	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
TroA	PF01297.12	gi|408402653|ref|YP_006860636.1|	-	2e-74	250.0	0.0	2.3e-74	249.9	0.0	1.0	1	0	0	1	1	1	1	Periplasmic	solute	binding	protein	family
NikR_C	PF08753.6	gi|408402654|ref|YP_006860637.1|	-	1.2e-13	50.6	0.9	1.8e-13	50.1	0.6	1.3	1	0	0	1	1	1	1	NikR	C	terminal	nickel	binding	domain
RHH_1	PF01402.16	gi|408402654|ref|YP_006860637.1|	-	3.5e-06	26.6	0.1	8.9e-06	25.3	0.0	1.7	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
DUF2191	PF09957.4	gi|408402654|ref|YP_006860637.1|	-	0.011	15.5	0.2	0.027	14.2	0.1	1.6	1	1	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2191)
Glyco_tran_28_C	PF04101.11	gi|408402655|ref|YP_006860638.1|	-	1.3e-13	51.0	0.0	2.7e-13	49.9	0.0	1.7	1	0	0	1	1	1	1	Glycosyltransferase	family	28	C-terminal	domain
Glyco_trans_1_3	PF13528.1	gi|408402655|ref|YP_006860638.1|	-	1.6e-07	30.8	0.0	2.3e-07	30.3	0.0	1.1	1	0	0	1	1	1	1	Glycosyl	transferase	family	1
Glyco_trans_1_4	PF13692.1	gi|408402655|ref|YP_006860638.1|	-	0.034	14.2	0.0	0.091	12.9	0.0	1.7	2	0	0	2	2	2	0	Glycosyl	transferases	group	1
Kelch_1	PF01344.20	gi|408402656|ref|YP_006860639.1|	-	6.3e-67	220.9	0.1	6.2e-15	54.4	0.0	6.5	6	0	0	6	6	6	6	Kelch	motif
Kelch_6	PF13964.1	gi|408402656|ref|YP_006860639.1|	-	1.4e-50	167.4	16.8	9.8e-14	50.8	0.0	7.3	4	3	3	7	7	7	6	Kelch	motif
Kelch_4	PF13418.1	gi|408402656|ref|YP_006860639.1|	-	3.6e-35	119.4	10.0	1.1e-10	41.1	0.0	6.5	7	0	0	7	7	7	6	Galactose	oxidase,	central	domain
Kelch_3	PF13415.1	gi|408402656|ref|YP_006860639.1|	-	1.8e-34	117.1	18.3	3.2e-10	39.8	0.0	7.0	7	0	0	7	7	7	5	Galactose	oxidase,	central	domain
Kelch_2	PF07646.10	gi|408402656|ref|YP_006860639.1|	-	6.4e-33	111.2	0.0	3.1e-07	29.9	0.0	6.8	6	1	0	6	6	6	6	Kelch	motif
Kelch_5	PF13854.1	gi|408402656|ref|YP_006860639.1|	-	1.8e-28	97.9	6.7	1.3e-05	25.0	0.0	6.4	6	0	0	6	6	6	5	Kelch	motif
PQQ_3	PF13570.1	gi|408402656|ref|YP_006860639.1|	-	1.8e-06	27.9	7.2	0.053	13.8	0.0	5.1	6	0	0	6	6	6	2	PQQ-like	domain
Rax2	PF12768.2	gi|408402656|ref|YP_006860639.1|	-	0.076	12.2	0.0	0.19	10.9	0.0	1.7	1	0	0	1	1	1	0	Cortical	protein	marker	for	cell	polarity
Phage_head_chap	PF11113.3	gi|408402657|ref|YP_006860640.1|	-	0.025	14.4	0.0	0.03	14.2	0.0	1.1	1	0	0	1	1	1	0	Head	assembly	gene	product
DZR	PF12773.2	gi|408402658|ref|YP_006860641.1|	-	0.019	14.7	2.4	0.065	13.0	1.6	1.8	1	1	0	1	1	1	0	Double	zinc	ribbon
Nudix_N_2	PF14803.1	gi|408402658|ref|YP_006860641.1|	-	0.045	13.4	1.3	4.5	7.0	0.1	2.2	2	0	0	2	2	2	0	Nudix	N-terminal
TF_Zn_Ribbon	PF08271.7	gi|408402658|ref|YP_006860641.1|	-	0.12	11.6	1.8	0.46	9.8	1.3	1.8	1	1	0	1	1	1	0	TFIIB	zinc-binding
Zn-ribbon_8	PF09723.5	gi|408402658|ref|YP_006860641.1|	-	0.18	11.7	1.2	1.9	8.5	0.1	2.1	2	0	0	2	2	2	0	Zinc	ribbon	domain
zinc_ribbon_2	PF13240.1	gi|408402658|ref|YP_006860641.1|	-	0.2	11.1	1.0	1.2	8.7	0.4	2.0	1	1	1	2	2	2	0	zinc-ribbon	domain
zf-ribbon_3	PF13248.1	gi|408402658|ref|YP_006860641.1|	-	0.27	10.5	3.5	1.1	8.5	2.0	2.0	1	1	1	2	2	2	0	zinc-ribbon	domain
zf-HYPF	PF07503.7	gi|408402658|ref|YP_006860641.1|	-	0.42	10.0	3.7	5.8	6.4	0.2	2.2	2	0	0	2	2	2	0	HypF	finger
ADK_lid	PF05191.9	gi|408402658|ref|YP_006860641.1|	-	1.6	8.4	4.4	4	7.1	0.6	2.1	2	0	0	2	2	2	0	Adenylate	kinase,	active	site	lid
A2L_zn_ribbon	PF08792.5	gi|408402659|ref|YP_006860642.1|	-	0.0093	15.4	0.3	0.015	14.7	0.2	1.3	1	0	0	1	1	1	1	A2L	zinc	ribbon	domain
zf-BED	PF02892.10	gi|408402659|ref|YP_006860642.1|	-	0.033	13.9	0.0	0.057	13.1	0.0	1.4	1	0	0	1	1	1	0	BED	zinc	finger
PmrD	PF11183.3	gi|408402660|ref|YP_006860643.1|	-	0.04	13.7	0.1	0.11	12.3	0.0	1.7	1	1	1	2	2	2	0	Polymyxin	resistance	protein	PmrD
COPI_C	PF06957.6	gi|408402660|ref|YP_006860643.1|	-	0.11	10.9	0.2	0.14	10.6	0.1	1.1	1	0	0	1	1	1	0	Coatomer	(COPI)	alpha	subunit	C-terminus
FYVE	PF01363.16	gi|408402660|ref|YP_006860643.1|	-	0.33	10.8	12.2	0.35	10.8	6.2	2.4	1	1	1	2	2	2	0	FYVE	zinc	finger
DUF2039	PF10217.4	gi|408402660|ref|YP_006860643.1|	-	0.37	10.8	0.2	0.37	10.8	0.1	2.4	1	1	1	2	2	2	0	Uncharacterized	conserved	protein	(DUF2039)
zf-C2HC5	PF06221.8	gi|408402660|ref|YP_006860643.1|	-	1.9	8.2	9.8	6.6	6.5	0.3	2.4	2	0	0	2	2	2	0	Putative	zinc	finger	motif,	C2HC5-type
FYVE_2	PF02318.11	gi|408402660|ref|YP_006860643.1|	-	3.1	7.7	9.7	3.3	7.6	5.2	2.2	1	1	1	2	2	2	0	FYVE-type	zinc	finger
zf-RING_5	PF14634.1	gi|408402660|ref|YP_006860643.1|	-	5.2	6.8	10.5	2.5	7.9	4.5	2.3	2	0	0	2	2	2	0	zinc-RING	finger	domain
Rpr2	PF04032.11	gi|408402660|ref|YP_006860643.1|	-	5.8	6.8	10.4	3.4	7.6	0.4	2.5	1	1	1	2	2	2	0	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
zf-C3HC4_2	PF13923.1	gi|408402660|ref|YP_006860643.1|	-	9	6.4	9.9	10	6.2	5.0	2.3	2	0	0	2	2	2	0	Zinc	finger,	C3HC4	type	(RING	finger)
Prok-RING_2	PF14445.1	gi|408402660|ref|YP_006860643.1|	-	9.2	6.2	8.3	0.37	10.7	0.8	2.3	2	1	0	2	2	2	0	Prokaryotic	RING	finger	family	2
Nudix_N_2	PF14803.1	gi|408402661|ref|YP_006860644.1|	-	0.061	13.0	0.5	0.091	12.4	0.0	1.6	2	0	0	2	2	2	0	Nudix	N-terminal
DZR	PF12773.2	gi|408402661|ref|YP_006860644.1|	-	0.1	12.4	0.5	0.26	11.1	0.3	1.7	1	1	0	1	1	1	0	Double	zinc	ribbon
DUF3356	PF11836.3	gi|408402661|ref|YP_006860644.1|	-	0.15	11.9	0.0	0.16	11.7	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3356)
MMR_HSR1	PF01926.18	gi|408402662|ref|YP_006860645.1|	-	2e-15	56.7	0.8	1.2e-14	54.1	0.6	2.2	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
GTP-bdg_N	PF13167.1	gi|408402662|ref|YP_006860645.1|	-	2.2e-11	43.7	1.8	3.7e-11	42.9	0.1	2.1	2	0	0	2	2	2	1	GTP-binding	GTPase	N-terminal
SRPRB	PF09439.5	gi|408402662|ref|YP_006860645.1|	-	1.7e-07	30.6	0.7	3.9e-07	29.4	0.5	1.6	1	0	0	1	1	1	1	Signal	recognition	particle	receptor	beta	subunit
FeoB_N	PF02421.13	gi|408402662|ref|YP_006860645.1|	-	6.2e-07	28.8	3.1	5.5e-06	25.7	0.7	2.5	2	1	0	2	2	2	1	Ferrous	iron	transport	protein	B
cobW	PF02492.14	gi|408402662|ref|YP_006860645.1|	-	1.4e-06	27.8	5.2	0.009	15.4	0.2	2.7	2	1	1	3	3	2	2	CobW/HypB/UreG,	nucleotide-binding	domain
GTP_EFTU	PF00009.22	gi|408402662|ref|YP_006860645.1|	-	1.4e-05	24.5	3.3	0.0033	16.8	0.5	2.4	2	0	0	2	2	2	2	Elongation	factor	Tu	GTP	binding	domain
ABC_tran	PF00005.22	gi|408402662|ref|YP_006860645.1|	-	2.6e-05	24.5	0.5	0.00016	21.9	0.1	2.5	1	1	1	2	2	2	1	ABC	transporter
Arf	PF00025.16	gi|408402662|ref|YP_006860645.1|	-	8.2e-05	21.9	6.0	0.00076	18.7	4.2	2.2	1	1	0	1	1	1	1	ADP-ribosylation	factor	family
DUF258	PF03193.11	gi|408402662|ref|YP_006860645.1|	-	0.00012	21.2	0.5	0.0012	18.0	0.0	2.3	2	0	0	2	2	2	1	Protein	of	unknown	function,	DUF258
PduV-EutP	PF10662.4	gi|408402662|ref|YP_006860645.1|	-	0.00027	20.4	2.9	0.42	10.0	0.1	2.6	2	1	0	2	2	2	2	Ethanolamine	utilisation	-	propanediol	utilisation
AAA_18	PF13238.1	gi|408402662|ref|YP_006860645.1|	-	0.00044	20.5	3.0	0.022	15.0	0.1	3.2	3	0	0	3	3	3	1	AAA	domain
IDO	PF01231.13	gi|408402662|ref|YP_006860645.1|	-	0.00051	18.5	0.6	0.003	16.0	0.0	2.1	2	1	0	2	2	2	1	Indoleamine	2,3-dioxygenase
AAA_16	PF13191.1	gi|408402662|ref|YP_006860645.1|	-	0.002	18.1	0.2	0.0066	16.4	0.1	1.9	1	1	0	1	1	1	1	AAA	ATPase	domain
MobB	PF03205.9	gi|408402662|ref|YP_006860645.1|	-	0.0049	16.5	0.2	0.015	14.9	0.1	1.9	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_33	PF13671.1	gi|408402662|ref|YP_006860645.1|	-	0.0058	16.5	0.0	0.012	15.5	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
NB-ARC	PF00931.17	gi|408402662|ref|YP_006860645.1|	-	0.0072	15.2	0.4	0.012	14.4	0.3	1.6	1	1	0	1	1	1	1	NB-ARC	domain
SRP54	PF00448.17	gi|408402662|ref|YP_006860645.1|	-	0.009	15.4	3.0	0.97	8.8	0.2	3.1	1	1	1	2	2	2	1	SRP54-type	protein,	GTPase	domain
AAA_29	PF13555.1	gi|408402662|ref|YP_006860645.1|	-	0.014	14.8	0.0	0.043	13.3	0.0	1.8	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
T2SE	PF00437.15	gi|408402662|ref|YP_006860645.1|	-	0.02	13.8	1.3	0.094	11.5	0.2	2.2	2	1	0	2	2	2	0	Type	II/IV	secretion	system	protein
AAA_14	PF13173.1	gi|408402662|ref|YP_006860645.1|	-	0.023	14.6	0.7	0.061	13.2	0.1	2.2	2	1	0	2	2	2	0	AAA	domain
AAA_22	PF13401.1	gi|408402662|ref|YP_006860645.1|	-	0.035	14.2	0.7	0.1	12.7	0.1	2.2	3	1	0	3	3	1	0	AAA	domain
Zeta_toxin	PF06414.7	gi|408402662|ref|YP_006860645.1|	-	0.04	13.0	0.0	0.14	11.2	0.0	1.9	2	0	0	2	2	1	0	Zeta	toxin
Dynamin_N	PF00350.18	gi|408402662|ref|YP_006860645.1|	-	0.059	13.1	3.7	1.2	8.9	0.5	2.9	2	1	1	3	3	3	0	Dynamin	family
Miro	PF08477.8	gi|408402662|ref|YP_006860645.1|	-	0.061	13.8	2.5	0.13	12.7	0.1	2.8	3	1	1	4	4	4	0	Miro-like	protein
Ras	PF00071.17	gi|408402662|ref|YP_006860645.1|	-	0.11	11.8	1.1	0.37	10.1	0.7	1.9	1	1	0	1	1	1	0	Ras	family
AAA_17	PF13207.1	gi|408402662|ref|YP_006860645.1|	-	0.29	11.9	1.8	0.37	11.6	0.1	2.2	2	2	0	2	2	2	0	AAA	domain
AAA_23	PF13476.1	gi|408402662|ref|YP_006860645.1|	-	6.3	7.0	8.8	0.46	10.7	0.3	2.5	1	1	1	2	2	2	0	AAA	domain
mRNA_cap_C	PF03919.10	gi|408402663|ref|YP_006860646.1|	-	0.042	14.1	0.1	0.074	13.3	0.1	1.5	1	1	0	1	1	1	0	mRNA	capping	enzyme,	C-terminal	domain
DUF1829	PF08862.5	gi|408402665|ref|YP_006860648.1|	-	0.054	13.7	0.0	0.088	13.1	0.0	1.6	1	1	0	1	1	1	0	Domain	of	unknown	function	DUF1829
eIF-1a	PF01176.14	gi|408402666|ref|YP_006860649.1|	-	8.3e-22	76.3	0.8	1e-21	76.1	0.6	1.1	1	0	0	1	1	1	1	Translation	initiation	factor	1A	/	IF-1
Myosin_N	PF02736.14	gi|408402666|ref|YP_006860649.1|	-	0.0054	16.3	1.2	0.025	14.2	0.2	2.2	2	1	0	2	2	2	1	Myosin	N-terminal	SH3-like	domain
AsnC_trans_reg	PF01037.16	gi|408402667|ref|YP_006860650.1|	-	2.3e-08	33.5	0.3	2.5e-08	33.4	0.2	1.1	1	0	0	1	1	1	1	AsnC	family
PKD	PF00801.15	gi|408402667|ref|YP_006860650.1|	-	0.016	14.9	0.1	0.022	14.4	0.0	1.2	1	0	0	1	1	1	0	PKD	domain
FlxA	PF14282.1	gi|408402668|ref|YP_006860651.1|	-	0.058	13.3	0.7	0.077	12.9	0.5	1.3	1	0	0	1	1	1	0	FlxA-like	protein
DUF4196	PF13846.1	gi|408402668|ref|YP_006860651.1|	-	0.21	11.8	2.4	0.26	11.5	1.7	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4196)
DUF482	PF04339.7	gi|408402668|ref|YP_006860651.1|	-	0.23	10.3	4.0	0.24	10.2	2.8	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF482
DUF3987	PF13148.1	gi|408402668|ref|YP_006860651.1|	-	2.9	6.3	5.9	3	6.3	4.1	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3987)
zf-C2H2	PF00096.21	gi|408402671|ref|YP_006860654.1|	-	0.022	15.0	0.5	0.022	15.0	0.3	2.4	3	0	0	3	3	3	0	Zinc	finger,	C2H2	type
CRAL_TRIO_2	PF13716.1	gi|408402671|ref|YP_006860654.1|	-	0.043	13.7	0.0	0.049	13.5	0.0	1.1	1	0	0	1	1	1	0	Divergent	CRAL/TRIO	domain
A2L_zn_ribbon	PF08792.5	gi|408402671|ref|YP_006860654.1|	-	0.056	12.9	0.0	0.096	12.1	0.0	1.4	1	0	0	1	1	1	0	A2L	zinc	ribbon	domain
DUF998	PF06197.8	gi|408402672|ref|YP_006860655.1|	-	0.11	11.8	1.9	0.18	11.0	1.3	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF998)
Na_H_Exchanger	PF00999.16	gi|408402674|ref|YP_006860657.1|	-	5.3e-65	219.4	47.4	7.1e-65	218.9	32.8	1.0	1	0	0	1	1	1	1	Sodium/hydrogen	exchanger	family
DUF217	PF02697.9	gi|408402675|ref|YP_006860658.1|	-	6.2e-13	48.7	0.1	7.3e-13	48.5	0.1	1.1	1	0	0	1	1	1	1	Uncharacterized	ACR,	COG1753
PIN	PF01850.16	gi|408402676|ref|YP_006860659.1|	-	4.1e-17	62.6	0.4	4.5e-17	62.5	0.3	1.0	1	0	0	1	1	1	1	PIN	domain
adh_short_C2	PF13561.1	gi|408402676|ref|YP_006860659.1|	-	0.0016	18.2	0.0	0.0017	18.1	0.0	1.1	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
PIN_3	PF13470.1	gi|408402676|ref|YP_006860659.1|	-	0.024	15.3	0.1	0.031	14.9	0.1	1.2	1	0	0	1	1	1	0	PIN	domain
DUF4401	PF14351.1	gi|408402677|ref|YP_006860660.1|	-	0.02	13.9	1.2	0.02	13.9	0.8	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4401)
DUF3951	PF13131.1	gi|408402677|ref|YP_006860660.1|	-	0.043	13.5	3.6	0.048	13.4	2.5	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3951)
DUF2659	PF10858.3	gi|408402677|ref|YP_006860660.1|	-	0.13	11.6	0.9	0.13	11.6	0.7	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2659)
PRA1	PF03208.14	gi|408402677|ref|YP_006860660.1|	-	0.13	11.5	1.4	0.14	11.5	1.0	1.0	1	0	0	1	1	1	0	PRA1	family	protein
DUF4191	PF13829.1	gi|408402677|ref|YP_006860660.1|	-	0.3	10.1	1.7	0.27	10.3	1.2	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4191)
Polysacc_deac_1	PF01522.16	gi|408402678|ref|YP_006860661.1|	-	0.00012	21.7	0.0	0.00075	19.1	0.0	2.0	1	1	0	1	1	1	1	Polysaccharide	deacetylase
rve_2	PF13333.1	gi|408402679|ref|YP_006860662.1|	-	0.0042	17.1	0.1	0.0083	16.1	0.0	1.5	2	0	0	2	2	2	1	Integrase	core	domain
rve	PF00665.21	gi|408402681|ref|YP_006860664.1|	-	0.0033	17.5	0.1	0.0036	17.4	0.0	1.0	1	0	0	1	1	1	1	Integrase	core	domain
HTH_28	PF13518.1	gi|408402682|ref|YP_006860665.1|	-	3.7e-11	42.7	0.6	4.4e-11	42.5	0.4	1.3	1	1	0	1	1	1	1	Helix-turn-helix	domain
LZ_Tnp_IS481	PF13011.1	gi|408402682|ref|YP_006860665.1|	-	1.1e-09	38.4	0.0	1.2e-09	38.4	0.0	1.1	1	0	0	1	1	1	1	leucine-zipper	of	insertion	element	IS481
HTH_29	PF13551.1	gi|408402682|ref|YP_006860665.1|	-	1.9e-07	31.1	0.1	2.2e-07	30.9	0.1	1.1	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_23	PF13384.1	gi|408402682|ref|YP_006860665.1|	-	5e-07	29.1	0.2	9.5e-07	28.2	0.1	1.6	1	1	0	1	1	1	1	Homeodomain-like	domain
HTH_32	PF13565.1	gi|408402682|ref|YP_006860665.1|	-	0.00021	22.0	1.1	0.0006	20.5	0.2	1.8	1	1	1	2	2	2	2	Homeodomain-like	domain
HTH_Tnp_1	PF01527.15	gi|408402682|ref|YP_006860665.1|	-	0.0053	16.6	0.0	0.0061	16.4	0.0	1.1	1	0	0	1	1	1	1	Transposase
Terminase_5	PF06056.7	gi|408402682|ref|YP_006860665.1|	-	0.025	14.1	0.0	0.036	13.6	0.0	1.3	1	0	0	1	1	1	0	Putative	ATPase	subunit	of	terminase	(gpP-like)
HTH_Tnp_IS630	PF01710.11	gi|408402682|ref|YP_006860665.1|	-	0.061	12.9	0.1	0.061	12.9	0.1	1.1	1	0	0	1	1	1	0	Transposase
BrkDBD	PF09607.5	gi|408402682|ref|YP_006860665.1|	-	0.14	11.7	1.1	0.24	10.9	0.7	1.4	1	0	0	1	1	1	0	Brinker	DNA-binding	domain
DUF217	PF02697.9	gi|408402683|ref|YP_006860666.1|	-	5.1e-13	49.0	1.4	6.2e-13	48.7	0.9	1.1	1	0	0	1	1	1	1	Uncharacterized	ACR,	COG1753
Fe-S_biosyn	PF01521.15	gi|408402683|ref|YP_006860666.1|	-	0.06	13.2	0.1	0.078	12.9	0.0	1.2	1	0	0	1	1	1	0	Iron-sulphur	cluster	biosynthesis
PIN	PF01850.16	gi|408402684|ref|YP_006860667.1|	-	7.7e-12	45.6	0.2	8.6e-12	45.4	0.1	1.0	1	0	0	1	1	1	1	PIN	domain
Kdo	PF06293.9	gi|408402684|ref|YP_006860667.1|	-	0.069	12.2	0.0	0.097	11.7	0.0	1.3	1	0	0	1	1	1	0	Lipopolysaccharide	kinase	(Kdo/WaaP)	family
PIN	PF01850.16	gi|408402685|ref|YP_006860668.1|	-	4.9e-15	55.9	0.1	5.3e-15	55.8	0.1	1.0	1	0	0	1	1	1	1	PIN	domain
MRG	PF05712.8	gi|408402685|ref|YP_006860668.1|	-	0.11	11.4	0.0	0.13	11.1	0.0	1.2	1	0	0	1	1	1	0	MRG
DUF217	PF02697.9	gi|408402686|ref|YP_006860669.1|	-	1.8e-14	53.7	3.9	2.2e-14	53.4	2.7	1.1	1	0	0	1	1	1	1	Uncharacterized	ACR,	COG1753
WPP	PF13943.1	gi|408402686|ref|YP_006860669.1|	-	0.031	14.4	0.2	0.04	14.1	0.2	1.2	1	0	0	1	1	1	0	WPP	domain
VirDNA-topo-I_N	PF09266.5	gi|408402686|ref|YP_006860669.1|	-	0.11	12.3	0.0	0.18	11.7	0.0	1.4	1	0	0	1	1	1	0	Viral	DNA	topoisomerase	I,	N-terminal
Ycf54	PF10674.4	gi|408402686|ref|YP_006860669.1|	-	0.17	11.9	0.5	17	5.6	0.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2488)
DUF772	PF05598.6	gi|408402688|ref|YP_006860671.1|	-	0.089	12.7	0.0	0.089	12.7	0.0	1.1	1	0	0	1	1	1	0	Transposase	domain	(DUF772)
DDE_Tnp_1	PF01609.16	gi|408402689|ref|YP_006860672.1|	-	0.014	14.9	0.1	0.035	13.6	0.1	1.6	1	1	0	1	1	1	0	Transposase	DDE	domain
DDE_Tnp_1_2	PF13586.1	gi|408402689|ref|YP_006860672.1|	-	0.091	12.9	0.8	0.22	11.7	0.1	2.0	2	1	0	2	2	2	0	Transposase	DDE	domain
MannoseP_isomer	PF01050.13	gi|408402690|ref|YP_006860673.1|	-	3.5e-18	65.6	0.0	4.4e-18	65.3	0.0	1.1	1	0	0	1	1	1	1	Mannose-6-phosphate	isomerase
Cupin_2	PF07883.6	gi|408402690|ref|YP_006860673.1|	-	1.4e-06	27.7	0.0	2.2e-06	27.0	0.0	1.3	1	0	0	1	1	1	1	Cupin	domain
FdtA	PF05523.6	gi|408402690|ref|YP_006860673.1|	-	0.00017	21.0	0.0	0.00023	20.6	0.0	1.2	1	0	0	1	1	1	1	WxcM-like,	C-terminal
Cupin_1	PF00190.17	gi|408402690|ref|YP_006860673.1|	-	0.0022	17.4	0.0	0.0032	16.9	0.0	1.3	1	1	0	1	1	1	1	Cupin
DUF4131	PF13567.1	gi|408402690|ref|YP_006860673.1|	-	0.0036	16.7	0.2	0.0051	16.2	0.1	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4131)
DUF1498	PF07385.7	gi|408402690|ref|YP_006860673.1|	-	0.093	11.8	0.0	0.19	10.8	0.0	1.5	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1498)
DEDD_Tnp_IS110	PF01548.12	gi|408402693|ref|YP_006860676.1|	-	0.0045	16.6	0.0	0.0047	16.5	0.0	1.0	1	0	0	1	1	1	1	Transposase
Transposase_20	PF02371.11	gi|408402694|ref|YP_006860677.1|	-	3.4e-18	65.5	0.0	3.9e-18	65.3	0.0	1.1	1	0	0	1	1	1	1	Transposase	IS116/IS110/IS902	family
HTH_OrfB_IS605	PF12323.3	gi|408402696|ref|YP_006860679.1|	-	5.2e-13	48.0	0.2	5.2e-13	48.0	0.1	1.6	2	0	0	2	2	2	1	Helix-turn-helix	domain
OrfB_IS605	PF01385.14	gi|408402697|ref|YP_006860680.1|	-	8.9e-06	25.2	0.3	9.6e-06	25.1	0.2	1.0	1	0	0	1	1	1	1	Probable	transposase
OrfB_IS605	PF01385.14	gi|408402698|ref|YP_006860681.1|	-	3.1e-18	66.0	0.7	4.3e-18	65.5	0.5	1.1	1	0	0	1	1	1	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.6	gi|408402699|ref|YP_006860682.1|	-	1.8e-22	78.7	3.5	1.9e-22	78.6	1.3	1.9	2	0	0	2	2	2	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.14	gi|408402699|ref|YP_006860682.1|	-	3.8e-15	55.9	2.7	7.3e-15	54.9	1.8	1.6	1	1	0	1	1	1	1	Probable	transposase
Zn_Tnp_IS1595	PF12760.2	gi|408402699|ref|YP_006860682.1|	-	0.00048	19.8	3.6	0.0012	18.6	2.5	1.7	1	0	0	1	1	1	1	Transposase	zinc-ribbon	domain
DUF2387	PF09526.5	gi|408402699|ref|YP_006860682.1|	-	0.0089	15.9	1.7	0.024	14.5	1.2	1.7	1	0	0	1	1	1	1	Probable	metal-binding	protein	(DUF2387)
IBR	PF01485.16	gi|408402699|ref|YP_006860682.1|	-	0.029	14.2	0.6	0.059	13.2	0.4	1.4	1	0	0	1	1	1	0	IBR	domain
A2M_N	PF01835.14	gi|408402701|ref|YP_006860684.1|	-	7.6e-07	29.3	15.5	0.0042	17.3	0.0	7.0	8	0	0	8	8	8	4	MG2	domain
Poly_export	PF02563.11	gi|408402701|ref|YP_006860684.1|	-	0.095	12.4	5.0	1.4	8.7	0.0	4.1	4	0	0	4	4	4	0	Polysaccharide	biosynthesis/export	protein
A2M_N	PF01835.14	gi|408402702|ref|YP_006860685.1|	-	0.039	14.2	0.0	0.096	12.9	0.0	1.7	1	0	0	1	1	1	0	MG2	domain
FANCAA	PF15146.1	gi|408402702|ref|YP_006860685.1|	-	0.066	12.1	0.3	0.098	11.5	0.2	1.1	1	0	0	1	1	1	0	Fanconi	anemia-associated
HTH_OrfB_IS605	PF12323.3	gi|408402703|ref|YP_006860686.1|	-	1.3e-15	56.3	0.1	1.5e-15	56.1	0.1	1.0	1	0	0	1	1	1	1	Helix-turn-helix	domain
PIN	PF01850.16	gi|408402704|ref|YP_006860687.1|	-	5.1e-12	46.1	0.4	5.9e-12	45.9	0.3	1.0	1	0	0	1	1	1	1	PIN	domain
DUF1685	PF07939.6	gi|408402704|ref|YP_006860687.1|	-	0.13	11.8	0.0	0.21	11.2	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1685)
DUF217	PF02697.9	gi|408402705|ref|YP_006860688.1|	-	6.7e-11	42.2	0.1	8e-11	42.0	0.1	1.1	1	0	0	1	1	1	1	Uncharacterized	ACR,	COG1753
RuvA_C	PF07499.8	gi|408402705|ref|YP_006860688.1|	-	0.12	12.5	0.0	18	5.5	0.0	2.1	2	0	0	2	2	2	0	RuvA,	C-terminal	domain
DUF515	PF04415.7	gi|408402707|ref|YP_006860690.1|	-	0.056	11.6	2.4	0.062	11.5	1.6	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF515)
DUF217	PF02697.9	gi|408402707|ref|YP_006860690.1|	-	0.065	13.4	4.2	0.13	12.5	2.9	1.7	1	1	0	1	1	1	0	Uncharacterized	ACR,	COG1753
V-ATPase_G	PF03179.10	gi|408402707|ref|YP_006860690.1|	-	0.072	13.3	1.8	0.14	12.4	0.1	1.9	1	1	1	2	2	2	0	Vacuolar	(H+)-ATPase	G	subunit
Plasmid_stabil	PF05016.9	gi|408402708|ref|YP_006860691.1|	-	5.1e-09	36.4	0.1	6.4e-09	36.0	0.1	1.1	1	0	0	1	1	1	1	Plasmid	stabilisation	system	protein
OrfB_IS605	PF01385.14	gi|408402709|ref|YP_006860692.1|	-	8.4e-24	84.2	7.2	1.6e-23	83.3	5.0	1.4	1	0	0	1	1	1	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.6	gi|408402709|ref|YP_006860692.1|	-	2.1e-21	75.3	0.4	4.5e-21	74.2	0.2	1.6	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
HTH_OrfB_IS605	PF12323.3	gi|408402709|ref|YP_006860692.1|	-	8.7e-15	53.7	0.2	3.4e-14	51.8	0.2	2.0	1	0	0	1	1	1	1	Helix-turn-helix	domain
zf-ribbon_3	PF13248.1	gi|408402709|ref|YP_006860692.1|	-	0.019	14.1	2.2	0.19	10.9	1.0	2.6	2	1	1	3	3	3	0	zinc-ribbon	domain
DZR	PF12773.2	gi|408402709|ref|YP_006860692.1|	-	0.029	14.1	0.6	0.076	12.8	0.1	1.8	2	0	0	2	2	2	0	Double	zinc	ribbon
TF_Zn_Ribbon	PF08271.7	gi|408402709|ref|YP_006860692.1|	-	0.05	12.9	0.3	0.74	9.1	0.0	2.4	2	0	0	2	2	2	0	TFIIB	zinc-binding
Prok-RING_1	PF14446.1	gi|408402709|ref|YP_006860692.1|	-	0.066	12.9	0.6	0.13	11.9	0.4	1.5	1	0	0	1	1	1	0	Prokaryotic	RING	finger	family	1
HypA	PF01155.14	gi|408402709|ref|YP_006860692.1|	-	0.069	12.8	0.0	0.16	11.6	0.0	1.6	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
zinc_ribbon_2	PF13240.1	gi|408402709|ref|YP_006860692.1|	-	0.11	12.0	3.0	2.4	7.7	2.0	2.7	2	1	2	4	4	4	0	zinc-ribbon	domain
zf-NADH-PPase	PF09297.6	gi|408402709|ref|YP_006860692.1|	-	0.18	11.3	3.0	0.34	10.4	1.1	2.1	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
Nudix_N_2	PF14803.1	gi|408402709|ref|YP_006860692.1|	-	0.28	10.9	4.0	3	7.5	2.8	2.3	1	1	0	1	1	1	0	Nudix	N-terminal
Rpr2	PF04032.11	gi|408402709|ref|YP_006860692.1|	-	1.2	9.0	7.5	35	4.3	1.9	3.8	2	1	0	2	2	2	0	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
Ribosomal_L1	PF00687.16	gi|408402710|ref|YP_006860693.1|	-	2.2e-42	144.8	0.2	2.7e-42	144.6	0.2	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L1p/L10e	family
Activator-TraM	PF11657.3	gi|408402710|ref|YP_006860693.1|	-	0.038	13.4	0.5	0.085	12.3	0.3	1.6	1	0	0	1	1	1	0	Transcriptional	activator	TraM
Ribosomal_L10	PF00466.15	gi|408402711|ref|YP_006860694.1|	-	5.2e-19	68.0	3.4	1.1e-18	67.0	2.0	1.8	2	0	0	2	2	2	1	Ribosomal	protein	L10
DUF1815	PF08844.5	gi|408402712|ref|YP_006860695.1|	-	0.012	15.1	0.5	0.35	10.4	0.1	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1815)
DUF1218	PF06749.7	gi|408402712|ref|YP_006860695.1|	-	0.069	13.6	1.7	0.35	11.3	0.0	2.4	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1218)
DDE_Tnp_1	PF01609.16	gi|408402713|ref|YP_006860696.1|	-	4.8e-11	42.6	0.6	8.5e-11	41.8	0.4	1.3	1	1	0	1	1	1	1	Transposase	DDE	domain
Peptidase_M16_C	PF05193.16	gi|408402713|ref|YP_006860696.1|	-	0.032	13.8	0.0	0.038	13.6	0.0	1.1	1	0	0	1	1	1	0	Peptidase	M16	inactive	domain
DDE_Tnp_1_2	PF13586.1	gi|408402713|ref|YP_006860696.1|	-	0.078	13.1	0.4	0.29	11.3	0.3	2.0	1	1	0	1	1	1	0	Transposase	DDE	domain
OrfB_IS605	PF01385.14	gi|408402714|ref|YP_006860697.1|	-	3.5e-24	85.4	6.1	6.8e-24	84.5	4.3	1.4	1	1	0	1	1	1	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.6	gi|408402714|ref|YP_006860697.1|	-	2e-21	75.4	0.4	4.3e-21	74.3	0.2	1.6	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
HTH_OrfB_IS605	PF12323.3	gi|408402714|ref|YP_006860697.1|	-	1.4e-15	56.3	0.2	5.4e-15	54.4	0.1	2.0	1	0	0	1	1	1	1	Helix-turn-helix	domain
zf-ribbon_3	PF13248.1	gi|408402714|ref|YP_006860697.1|	-	0.018	14.2	2.2	0.18	11.0	1.0	2.6	2	1	1	3	3	3	0	zinc-ribbon	domain
DZR	PF12773.2	gi|408402714|ref|YP_006860697.1|	-	0.024	14.4	0.5	0.069	12.9	0.1	1.8	2	0	0	2	2	2	0	Double	zinc	ribbon
TF_Zn_Ribbon	PF08271.7	gi|408402714|ref|YP_006860697.1|	-	0.045	13.0	0.3	0.71	9.2	0.0	2.4	2	0	0	2	2	2	0	TFIIB	zinc-binding
Prok-RING_1	PF14446.1	gi|408402714|ref|YP_006860697.1|	-	0.062	13.0	0.6	0.13	12.0	0.4	1.5	1	0	0	1	1	1	0	Prokaryotic	RING	finger	family	1
HypA	PF01155.14	gi|408402714|ref|YP_006860697.1|	-	0.068	12.8	0.0	0.16	11.6	0.0	1.5	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
zinc_ribbon_2	PF13240.1	gi|408402714|ref|YP_006860697.1|	-	0.092	12.2	2.8	2.1	7.9	1.9	2.7	2	1	2	4	4	4	0	zinc-ribbon	domain
zf-NADH-PPase	PF09297.6	gi|408402714|ref|YP_006860697.1|	-	0.17	11.4	2.9	0.32	10.5	1.1	2.1	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
Nudix_N_2	PF14803.1	gi|408402714|ref|YP_006860697.1|	-	0.26	11.0	4.0	2.9	7.6	2.8	2.3	1	1	0	1	1	1	0	Nudix	N-terminal
Rpr2	PF04032.11	gi|408402714|ref|YP_006860697.1|	-	1.5	8.7	7.9	42	4.0	2.1	3.8	2	1	0	2	2	2	0	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
zf-C2H2_6	PF13912.1	gi|408402715|ref|YP_006860698.1|	-	1.1e-05	25.1	9.9	0.00021	21.0	2.3	2.7	2	1	0	2	2	2	2	C2H2-type	zinc	finger
zf-C2H2	PF00096.21	gi|408402715|ref|YP_006860698.1|	-	1.6e-05	24.9	6.9	0.0045	17.2	0.3	2.5	2	0	0	2	2	2	2	Zinc	finger,	C2H2	type
zf-C2H2_4	PF13894.1	gi|408402715|ref|YP_006860698.1|	-	0.00058	20.0	8.9	0.13	12.6	0.2	2.8	2	1	0	2	2	2	2	C2H2-type	zinc	finger
FYVE	PF01363.16	gi|408402715|ref|YP_006860698.1|	-	0.0072	16.1	5.2	0.011	15.6	3.6	1.3	1	0	0	1	1	1	1	FYVE	zinc	finger
Prok-RING_1	PF14446.1	gi|408402715|ref|YP_006860698.1|	-	0.0074	15.9	0.6	2.2	8.0	0.0	2.2	2	0	0	2	2	2	2	Prokaryotic	RING	finger	family	1
zf-BED	PF02892.10	gi|408402715|ref|YP_006860698.1|	-	0.015	15.0	5.7	0.093	12.4	1.1	2.3	1	1	1	2	2	2	0	BED	zinc	finger
WAC_Acf1_DNA_bd	PF10537.4	gi|408402715|ref|YP_006860698.1|	-	0.019	15.1	0.6	0.021	14.9	0.4	1.1	1	0	0	1	1	1	0	ATP-utilising	chromatin	assembly	and	remodelling	N-terminal
Cytochrome_C554	PF13435.1	gi|408402715|ref|YP_006860698.1|	-	0.027	14.5	4.3	0.031	14.3	3.0	1.1	1	0	0	1	1	1	0	Cytochrome	c554	and	c-prime
zf-met	PF12874.2	gi|408402715|ref|YP_006860698.1|	-	0.063	13.5	2.5	1.4	9.2	0.2	2.4	2	0	0	2	2	2	0	Zinc-finger	of	C2H2	type
zf-CHY	PF05495.7	gi|408402715|ref|YP_006860698.1|	-	0.067	13.3	5.6	0.092	12.9	3.9	1.3	1	0	0	1	1	1	0	CHY	zinc	finger
XPA_N	PF01286.13	gi|408402715|ref|YP_006860698.1|	-	0.095	12.3	5.4	0.38	10.4	0.4	2.2	2	0	0	2	2	2	0	XPA	protein	N-terminal
Lar_restr_allev	PF14354.1	gi|408402715|ref|YP_006860698.1|	-	0.12	12.7	1.2	1.3	9.3	0.1	2.1	1	1	1	2	2	2	0	Restriction	alleviation	protein	Lar
zf-trcl	PF13451.1	gi|408402715|ref|YP_006860698.1|	-	0.5	10.0	4.9	1.4	8.6	0.1	2.3	2	0	0	2	2	2	0	Probable	zinc-binding	domain
zf-H2C2_2	PF13465.1	gi|408402715|ref|YP_006860698.1|	-	0.53	10.6	11.6	0.61	10.4	1.8	2.8	2	1	1	3	3	3	0	Zinc-finger	double	domain
zinc_ribbon_4	PF13717.1	gi|408402715|ref|YP_006860698.1|	-	0.87	9.3	4.5	11	5.8	3.1	2.2	1	1	0	1	1	1	0	zinc-ribbon	domain
zinc_ribbon_5	PF13719.1	gi|408402715|ref|YP_006860698.1|	-	1.2	8.7	4.9	16	5.1	3.4	2.2	1	1	0	1	1	1	0	zinc-ribbon	domain
Evr1_Alr	PF04777.8	gi|408402715|ref|YP_006860698.1|	-	2	8.3	5.1	2.5	8.0	0.4	2.0	1	1	1	2	2	2	0	Erv1	/	Alr	family
Cytochrom_c3_2	PF14537.1	gi|408402715|ref|YP_006860698.1|	-	2.3	8.6	7.9	4.5	7.6	5.5	1.6	1	1	0	1	1	1	0	Cytochrome	c3
Zn-ribbon_8	PF09723.5	gi|408402715|ref|YP_006860698.1|	-	3.2	7.8	5.9	86	3.2	4.1	2.3	1	1	0	1	1	1	0	Zinc	ribbon	domain
zf-C2H2_jaz	PF12171.3	gi|408402715|ref|YP_006860698.1|	-	3.2	8.0	9.1	0.37	11.0	0.7	2.6	1	1	1	2	2	2	0	Zinc-finger	double-stranded	RNA-binding
zf-LYAR	PF08790.6	gi|408402715|ref|YP_006860698.1|	-	3.4	7.4	6.1	0.62	9.8	0.2	2.4	2	1	0	2	2	2	0	LYAR-type	C2HC	zinc	finger
Cytochrome_C7	PF14522.1	gi|408402715|ref|YP_006860698.1|	-	3.5	7.3	9.6	17	5.1	6.5	1.9	1	1	0	1	1	1	0	Cytochrome	c7
4HBT	PF03061.17	gi|408402716|ref|YP_006860699.1|	-	0.0078	16.3	0.0	0.01	15.9	0.0	1.3	1	0	0	1	1	1	1	Thioesterase	superfamily
Porphobil_deamC	PF03900.10	gi|408402716|ref|YP_006860699.1|	-	0.12	12.5	0.0	0.22	11.6	0.0	1.5	1	0	0	1	1	1	0	Porphobilinogen	deaminase,	C-terminal	domain
Cpn60_TCP1	PF00118.19	gi|408402717|ref|YP_006860700.1|	-	2.7e-170	567.1	15.3	3.1e-170	566.9	10.6	1.0	1	0	0	1	1	1	1	TCP-1/cpn60	chaperonin	family
zf-ribbon_3	PF13248.1	gi|408402718|ref|YP_006860701.1|	-	1.2e-08	33.9	2.8	2e-08	33.1	1.9	1.4	1	0	0	1	1	1	1	zinc-ribbon	domain
zinc_ribbon_2	PF13240.1	gi|408402718|ref|YP_006860701.1|	-	4.1e-08	32.4	5.9	9.6e-08	31.2	4.1	1.7	1	0	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.2	gi|408402718|ref|YP_006860701.1|	-	3.4e-06	26.7	0.8	6.7e-06	25.8	0.6	1.4	1	0	0	1	1	1	1	Double	zinc	ribbon
UPF0547	PF10571.4	gi|408402718|ref|YP_006860701.1|	-	0.0053	16.4	2.7	0.011	15.4	1.9	1.5	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0547
ASFV_p27	PF06556.6	gi|408402718|ref|YP_006860701.1|	-	0.0067	16.3	0.2	0.014	15.3	0.1	1.6	1	0	0	1	1	1	1	IAP-like	protein	p27	C-terminus
zf-C4H2	PF10146.4	gi|408402718|ref|YP_006860701.1|	-	0.014	15.3	0.2	0.02	14.9	0.1	1.3	1	0	0	1	1	1	0	Zinc	finger-containing	protein
Nudix_N_2	PF14803.1	gi|408402718|ref|YP_006860701.1|	-	0.12	12.1	5.8	2.7	7.7	0.1	2.4	2	0	0	2	2	2	0	Nudix	N-terminal
DUF2116	PF09889.4	gi|408402718|ref|YP_006860701.1|	-	0.14	11.9	1.0	0.26	11.0	0.7	1.4	1	0	0	1	1	1	0	Uncharacterized	protein	containing	a	Zn-ribbon	(DUF2116)
zf-C3HC4_3	PF13920.1	gi|408402718|ref|YP_006860701.1|	-	0.25	11.0	2.4	0.42	10.3	1.7	1.3	1	0	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
RRN7	PF11781.3	gi|408402718|ref|YP_006860701.1|	-	0.46	10.0	3.3	1.7	8.2	0.5	2.8	3	0	0	3	3	3	0	RNA	polymerase	I-specific	transcription	initiation	factor	Rrn7
YhfH	PF14149.1	gi|408402718|ref|YP_006860701.1|	-	0.87	9.4	5.9	1.4	8.7	0.3	2.4	1	1	1	2	2	2	0	YhfH-like	protein
NOB1_Zn_bind	PF08772.6	gi|408402718|ref|YP_006860701.1|	-	1.1	9.1	6.7	26	4.7	4.9	2.4	1	1	1	2	2	2	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
Thymidylate_kin	PF02223.12	gi|408402719|ref|YP_006860702.1|	-	0.1	11.9	0.0	2.3	7.5	0.0	2.2	2	0	0	2	2	2	0	Thymidylate	kinase
DUF4064	PF13273.1	gi|408402720|ref|YP_006860703.1|	-	0.01	15.9	0.0	0.012	15.7	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4064)
DUF1772	PF08592.6	gi|408402720|ref|YP_006860703.1|	-	0.064	12.9	0.0	0.092	12.4	0.0	1.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF1772)
ParB	PF08775.5	gi|408402722|ref|YP_006860705.1|	-	0.031	14.5	0.4	0.036	14.3	0.3	1.2	1	0	0	1	1	1	0	ParB	family
OrfB_Zn_ribbon	PF07282.6	gi|408402722|ref|YP_006860705.1|	-	0.045	13.4	1.0	0.16	11.6	0.1	2.0	2	0	0	2	2	2	0	Putative	transposase	DNA-binding	domain
Ribosomal_L44	PF00935.14	gi|408402723|ref|YP_006860706.1|	-	6.9e-25	86.8	7.7	6.9e-25	86.8	5.3	1.5	1	1	1	2	2	2	1	Ribosomal	protein	L44
NOB1_Zn_bind	PF08772.6	gi|408402723|ref|YP_006860706.1|	-	0.00049	19.8	4.9	0.0013	18.4	0.1	2.1	2	0	0	2	2	2	1	Nin	one	binding	(NOB1)	Zn-ribbon	like
RNA_POL_M_15KD	PF02150.11	gi|408402723|ref|YP_006860706.1|	-	0.0054	16.3	2.6	1.6	8.4	0.1	2.4	2	0	0	2	2	2	2	RNA	polymerases	M/15	Kd	subunit
Ribosomal_L33	PF00471.15	gi|408402723|ref|YP_006860706.1|	-	0.0062	16.7	1.3	0.0062	16.7	0.9	2.4	2	0	0	2	2	2	1	Ribosomal	protein	L33
Ribosomal_L37ae	PF01780.14	gi|408402723|ref|YP_006860706.1|	-	0.011	15.5	2.9	0.36	10.7	0.1	2.2	2	0	0	2	2	2	0	Ribosomal	L37ae	protein	family
Nudix_N_2	PF14803.1	gi|408402723|ref|YP_006860706.1|	-	0.012	15.2	1.1	3.3	7.4	0.1	2.3	2	0	0	2	2	2	0	Nudix	N-terminal
Rpr2	PF04032.11	gi|408402723|ref|YP_006860706.1|	-	0.016	15.0	4.2	0.023	14.5	2.9	1.3	1	1	0	1	1	1	0	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
TFIIS_C	PF01096.13	gi|408402723|ref|YP_006860706.1|	-	0.052	13.1	7.2	0.38	10.4	1.4	2.2	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
GFA	PF04828.9	gi|408402723|ref|YP_006860706.1|	-	0.059	13.3	4.2	0.54	10.2	0.1	2.1	1	1	1	2	2	2	0	Glutathione-dependent	formaldehyde-activating	enzyme
zf-ribbon_3	PF13248.1	gi|408402723|ref|YP_006860706.1|	-	0.079	12.1	0.4	0.52	9.5	0.1	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
DZR	PF12773.2	gi|408402723|ref|YP_006860706.1|	-	0.09	12.6	4.9	0.32	10.8	3.4	1.8	1	1	0	1	1	1	0	Double	zinc	ribbon
DUF1284	PF06935.6	gi|408402723|ref|YP_006860706.1|	-	0.1	12.8	1.0	1.1	9.4	0.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1284)
zf-DNL	PF05180.7	gi|408402723|ref|YP_006860706.1|	-	0.11	12.2	3.0	0.44	10.3	0.5	2.2	2	0	0	2	2	2	0	DNL	zinc	finger
C1_4	PF07975.7	gi|408402723|ref|YP_006860706.1|	-	0.15	12.0	3.9	0.57	10.2	0.2	2.2	2	0	0	2	2	2	0	TFIIH	C1-like	domain
zf-ISL3	PF14690.1	gi|408402723|ref|YP_006860706.1|	-	0.28	11.2	3.1	3	7.9	0.1	2.4	2	0	0	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
zf-H2C2_5	PF13909.1	gi|408402723|ref|YP_006860706.1|	-	0.3	11.4	0.3	0.3	11.4	0.2	2.3	2	0	0	2	2	2	0	C2H2-type	zinc-finger	domain
Cys_rich_KTR	PF14205.1	gi|408402723|ref|YP_006860706.1|	-	0.3	10.5	0.3	0.3	10.5	0.2	2.1	2	0	0	2	2	2	0	Cysteine-rich	KTR
Zn_Tnp_IS1595	PF12760.2	gi|408402723|ref|YP_006860706.1|	-	0.47	10.2	3.0	9.9	6.0	0.3	2.2	2	0	0	2	2	2	0	Transposase	zinc-ribbon	domain
zf-PARP	PF00645.13	gi|408402723|ref|YP_006860706.1|	-	0.7	10.1	3.3	0.65	10.2	0.3	2.1	2	0	0	2	2	2	0	Poly(ADP-ribose)	polymerase	and	DNA-Ligase	Zn-finger	region
Zn-ribbon_8	PF09723.5	gi|408402723|ref|YP_006860706.1|	-	0.98	9.4	4.6	2.6	8.0	0.2	2.3	2	0	0	2	2	2	0	Zinc	ribbon	domain
Rubredoxin	PF00301.15	gi|408402723|ref|YP_006860706.1|	-	2.4	8.1	4.7	5.6	6.9	0.4	2.3	2	0	0	2	2	2	0	Rubredoxin
MafB19-deam	PF14437.1	gi|408402723|ref|YP_006860706.1|	-	6.3	6.4	6.3	5.7	6.5	0.3	2.2	1	1	0	2	2	2	0	MafB19-like	deaminase
Tnp_zf-ribbon_2	PF13842.1	gi|408402723|ref|YP_006860706.1|	-	7.1	7.1	9.0	15	6.1	1.9	2.3	2	0	0	2	2	2	0	DDE_Tnp_1-like	zinc-ribbon
zf-HIT	PF04438.11	gi|408402723|ref|YP_006860706.1|	-	9	6.0	9.2	18	5.0	0.4	2.2	2	0	0	2	2	2	0	HIT	zinc	finger
Ribosomal_S27e	PF01667.12	gi|408402724|ref|YP_006860707.1|	-	2.1e-16	59.2	0.1	2.3e-16	59.0	0.1	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S27
TF_Zn_Ribbon	PF08271.7	gi|408402724|ref|YP_006860707.1|	-	9.1e-06	24.9	0.6	1.2e-05	24.4	0.4	1.2	1	0	0	1	1	1	1	TFIIB	zinc-binding
DZR	PF12773.2	gi|408402724|ref|YP_006860707.1|	-	0.00057	19.6	0.6	0.00072	19.3	0.4	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
OrfB_Zn_ribbon	PF07282.6	gi|408402724|ref|YP_006860707.1|	-	0.0015	18.1	0.3	0.0015	18.1	0.2	1.2	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
DUF1610	PF07754.6	gi|408402724|ref|YP_006860707.1|	-	0.0021	18.1	1.9	0.35	11.0	0.1	2.4	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF1610)
Zn_Tnp_IS91	PF14319.1	gi|408402724|ref|YP_006860707.1|	-	0.0072	15.8	0.4	0.0085	15.5	0.3	1.1	1	0	0	1	1	1	1	Transposase	zinc-binding	domain
Zn-ribbon_8	PF09723.5	gi|408402724|ref|YP_006860707.1|	-	0.011	15.6	1.5	0.017	15.0	1.1	1.3	1	0	0	1	1	1	0	Zinc	ribbon	domain
DUF4206	PF13901.1	gi|408402724|ref|YP_006860707.1|	-	0.025	14.1	0.7	0.029	13.9	0.5	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4206)
zinc_ribbon_6	PF14599.1	gi|408402724|ref|YP_006860707.1|	-	0.026	14.2	0.4	0.039	13.7	0.3	1.2	1	0	0	1	1	1	0	Zinc-ribbon
zf-C4_Topoisom	PF01396.14	gi|408402724|ref|YP_006860707.1|	-	0.03	13.8	3.0	1.4	8.4	0.2	2.2	1	1	1	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
zinc_ribbon_4	PF13717.1	gi|408402724|ref|YP_006860707.1|	-	0.03	14.0	1.2	1.4	8.6	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
Mu-like_Com	PF10122.4	gi|408402724|ref|YP_006860707.1|	-	0.032	13.3	0.2	0.74	8.9	0.0	2.1	2	0	0	2	2	2	0	Mu-like	prophage	protein	Com
zf-dskA_traR	PF01258.12	gi|408402724|ref|YP_006860707.1|	-	0.032	13.9	0.7	3.1	7.6	0.1	2.2	2	0	0	2	2	2	0	Prokaryotic	dksA/traR	C4-type	zinc	finger
zinc_ribbon_5	PF13719.1	gi|408402724|ref|YP_006860707.1|	-	0.034	13.7	1.3	1.1	8.8	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
FYVE	PF01363.16	gi|408402724|ref|YP_006860707.1|	-	0.035	14.0	0.5	0.043	13.7	0.3	1.2	1	0	0	1	1	1	0	FYVE	zinc	finger
FeS	PF04060.8	gi|408402724|ref|YP_006860707.1|	-	0.041	13.4	4.6	0.83	9.2	0.4	2.2	2	0	0	2	2	2	0	Putative	Fe-S	cluster
zf-ribbon_3	PF13248.1	gi|408402724|ref|YP_006860707.1|	-	0.041	13.0	2.8	0.078	12.2	1.9	1.5	1	1	0	1	1	1	0	zinc-ribbon	domain
Lar_restr_allev	PF14354.1	gi|408402724|ref|YP_006860707.1|	-	0.044	14.0	1.0	0.096	12.9	0.7	1.6	1	1	0	1	1	1	0	Restriction	alleviation	protein	Lar
Zn_Tnp_IS1595	PF12760.2	gi|408402724|ref|YP_006860707.1|	-	0.056	13.2	0.9	0.076	12.8	0.6	1.2	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
zinc_ribbon_2	PF13240.1	gi|408402724|ref|YP_006860707.1|	-	0.069	12.6	1.4	3.8	7.1	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
HypA	PF01155.14	gi|408402724|ref|YP_006860707.1|	-	0.071	12.8	0.5	0.086	12.5	0.3	1.1	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
DUF1451	PF07295.6	gi|408402724|ref|YP_006860707.1|	-	0.083	12.6	0.8	0.098	12.4	0.5	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1451)
NCD3G	PF07562.9	gi|408402724|ref|YP_006860707.1|	-	0.085	12.5	1.6	0.12	12.1	1.1	1.2	1	0	0	1	1	1	0	Nine	Cysteines	Domain	of	family	3	GPCR
Mcm10	PF09332.6	gi|408402724|ref|YP_006860707.1|	-	0.11	11.7	0.0	0.13	11.6	0.0	1.0	1	0	0	1	1	1	0	Mcm10	replication	factor
zf-AN1	PF01428.11	gi|408402724|ref|YP_006860707.1|	-	0.2	11.5	2.2	11	5.9	0.1	2.1	2	0	0	2	2	2	0	AN1-like	Zinc	finger
TFIIS_C	PF01096.13	gi|408402724|ref|YP_006860707.1|	-	0.22	11.2	5.0	11	5.8	3.5	2.1	1	1	0	1	1	1	0	Transcription	factor	S-II	(TFIIS)
Elf1	PF05129.8	gi|408402724|ref|YP_006860707.1|	-	0.23	11.1	2.9	0.51	10.0	2.0	1.8	1	1	0	1	1	1	0	Transcription	elongation	factor	Elf1	like
DNA_RNApol_7kD	PF03604.8	gi|408402724|ref|YP_006860707.1|	-	0.23	10.9	5.8	5	6.6	4.0	2.1	1	1	0	1	1	1	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
Rpr2	PF04032.11	gi|408402724|ref|YP_006860707.1|	-	0.25	11.2	1.8	9.2	6.2	0.1	2.1	1	1	1	2	2	2	0	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
Auto_anti-p27	PF06677.7	gi|408402724|ref|YP_006860707.1|	-	0.26	11.0	1.8	4.2	7.2	1.8	2.0	1	1	1	2	2	2	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
zf-C2H2_3	PF13878.1	gi|408402724|ref|YP_006860707.1|	-	0.27	10.8	1.5	16	5.1	0.1	2.1	2	0	0	2	2	2	0	zinc-finger	of	acetyl-transferase	ESCO
Yippee-Mis18	PF03226.9	gi|408402724|ref|YP_006860707.1|	-	0.43	10.6	2.6	2.3	8.3	0.1	1.9	1	1	1	2	2	2	0	Yippee	zinc-binding/DNA-binding	/Mis18,	centromere	assembly
YhfH	PF14149.1	gi|408402724|ref|YP_006860707.1|	-	2.7	7.8	6.5	13	5.7	0.1	2.1	1	1	1	2	2	2	0	YhfH-like	protein
zf-C2HC_2	PF13913.1	gi|408402724|ref|YP_006860707.1|	-	3.7	7.3	5.3	1.4	8.6	0.5	2.0	2	0	0	2	2	2	0	zinc-finger	of	a	C2HC-type
NTP_transf_3	PF12804.2	gi|408402725|ref|YP_006860708.1|	-	7.2e-15	55.4	0.0	8.1e-15	55.2	0.0	1.2	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
IspD	PF01128.14	gi|408402725|ref|YP_006860708.1|	-	3.4e-06	26.7	0.0	0.00018	21.1	0.0	2.5	1	1	2	3	3	3	2	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
CTP_transf_3	PF02348.14	gi|408402725|ref|YP_006860708.1|	-	0.00089	18.9	0.0	0.0027	17.3	0.0	1.7	1	1	0	1	1	1	1	Cytidylyltransferase
CofC	PF01983.11	gi|408402725|ref|YP_006860708.1|	-	0.00094	18.1	0.0	0.0016	17.4	0.0	1.3	1	0	0	1	1	1	1	Guanylyl	transferase	CofC	like
RMMBL	PF07521.7	gi|408402725|ref|YP_006860708.1|	-	0.081	12.7	0.0	0.15	11.9	0.0	1.5	1	0	0	1	1	1	0	RNA-metabolising	metallo-beta-lactamase
CobS	PF02654.10	gi|408402726|ref|YP_006860709.1|	-	2.6e-42	145.0	17.2	3e-42	144.8	11.9	1.0	1	0	0	1	1	1	1	Cobalamin-5-phosphate	synthase
YlaH	PF14036.1	gi|408402726|ref|YP_006860709.1|	-	0.36	10.9	0.1	0.36	10.9	0.1	2.5	2	0	0	2	2	2	0	YlaH-like	protein
DUF1517	PF07466.6	gi|408402726|ref|YP_006860709.1|	-	2.6	6.9	4.9	0.63	8.9	0.2	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1517)
CobD_Cbib	PF03186.8	gi|408402727|ref|YP_006860710.1|	-	5.7e-94	314.5	5.3	6.9e-94	314.2	3.6	1.0	1	0	0	1	1	1	1	CobD/Cbib	protein
CoxIIa	PF08113.6	gi|408402727|ref|YP_006860710.1|	-	3.4	7.4	9.4	2.9	7.6	0.6	3.3	3	0	0	3	3	3	0	Cytochrome	c	oxidase	subunit	IIa	family
CbiA	PF01656.18	gi|408402728|ref|YP_006860711.1|	-	1.5e-29	102.8	0.0	1.8e-29	102.5	0.0	1.1	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_26	PF13500.1	gi|408402728|ref|YP_006860711.1|	-	3.5e-17	62.6	0.1	1.2e-16	60.8	0.1	1.8	1	1	0	1	1	1	1	AAA	domain
MobB	PF03205.9	gi|408402728|ref|YP_006860711.1|	-	0.00034	20.3	0.0	0.014	15.1	0.0	2.3	2	0	0	2	2	2	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
VirC1	PF07015.6	gi|408402728|ref|YP_006860711.1|	-	0.042	12.9	0.1	0.079	12.0	0.0	1.4	1	0	0	1	1	1	0	VirC1	protein
AAA_29	PF13555.1	gi|408402728|ref|YP_006860711.1|	-	0.089	12.3	0.1	0.27	10.8	0.1	1.8	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_30	PF13604.1	gi|408402728|ref|YP_006860711.1|	-	0.31	10.5	1.3	0.62	9.6	0.3	2.0	3	0	0	3	3	3	0	AAA	domain
Aminotran_1_2	PF00155.16	gi|408402729|ref|YP_006860712.1|	-	9.3e-45	153.1	0.0	1e-44	152.9	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Fic	PF02661.13	gi|408402731|ref|YP_006860714.1|	-	2.5e-23	82.6	0.1	8.5e-23	80.8	0.0	2.0	2	1	0	2	2	2	1	Fic/DOC	family
DUF1018	PF06252.7	gi|408402731|ref|YP_006860714.1|	-	0.022	15.2	0.0	0.05	14.1	0.0	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1018)
ResIII	PF04851.10	gi|408402732|ref|YP_006860715.1|	-	1.2e-23	83.9	2.4	1.1e-21	77.5	0.0	3.5	3	1	0	3	3	3	1	Type	III	restriction	enzyme,	res	subunit
Helicase_C	PF00271.26	gi|408402732|ref|YP_006860715.1|	-	5.6e-15	54.9	0.0	1.4e-14	53.6	0.0	1.8	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
DEAD	PF00270.24	gi|408402732|ref|YP_006860715.1|	-	2.6e-10	40.0	0.2	2.1e-09	37.1	0.0	2.4	2	2	0	2	2	2	1	DEAD/DEAH	box	helicase
SNF2_N	PF00176.18	gi|408402732|ref|YP_006860715.1|	-	1.5e-05	23.9	0.1	0.00028	19.8	0.0	2.4	1	1	1	2	2	2	1	SNF2	family	N-terminal	domain
HeH	PF12949.2	gi|408402732|ref|YP_006860715.1|	-	0.11	12.0	0.3	6.4	6.4	0.0	2.6	2	0	0	2	2	2	0	HeH/LEM	domain
DUF790	PF05626.6	gi|408402733|ref|YP_006860716.1|	-	1.1e-85	287.4	0.3	2.5e-78	263.2	0.1	2.6	3	0	0	3	3	3	2	Protein	of	unknown	function	(DUF790)
OrfB_IS605	PF01385.14	gi|408402734|ref|YP_006860717.1|	-	7.7e-08	32.0	0.2	8.5e-08	31.8	0.1	1.0	1	0	0	1	1	1	1	Probable	transposase
Semialdhyde_dhC	PF02774.13	gi|408402735|ref|YP_006860718.1|	-	9.5e-39	133.1	0.0	1.4e-38	132.5	0.0	1.2	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	dimerisation	domain
Semialdhyde_dh	PF01118.19	gi|408402735|ref|YP_006860718.1|	-	2.1e-26	92.5	0.0	4.4e-26	91.5	0.0	1.6	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
Gp_dh_C	PF02800.15	gi|408402735|ref|YP_006860718.1|	-	3.4e-06	26.6	0.2	0.0016	17.9	0.0	2.5	3	0	0	3	3	3	2	Glyceraldehyde	3-phosphate	dehydrogenase,	C-terminal	domain
DapB_N	PF01113.15	gi|408402735|ref|YP_006860718.1|	-	0.0011	18.9	0.0	0.0024	17.7	0.0	1.6	1	0	0	1	1	1	1	Dihydrodipicolinate	reductase,	N-terminus
GFO_IDH_MocA	PF01408.17	gi|408402735|ref|YP_006860718.1|	-	0.095	13.2	0.0	0.21	12.1	0.0	1.6	1	0	0	1	1	1	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
Ldh_1_N	PF00056.18	gi|408402735|ref|YP_006860718.1|	-	0.11	12.2	0.0	0.21	11.3	0.0	1.4	1	0	0	1	1	1	0	lactate/malate	dehydrogenase,	NAD	binding	domain
Perilipin	PF03036.11	gi|408402736|ref|YP_006860719.1|	-	0.029	13.2	0.1	0.035	12.9	0.1	1.0	1	0	0	1	1	1	0	Perilipin	family
NMD3	PF04981.8	gi|408402736|ref|YP_006860719.1|	-	0.03	13.4	1.4	0.035	13.2	1.0	1.0	1	0	0	1	1	1	0	NMD3	family
Alg14	PF08660.6	gi|408402736|ref|YP_006860719.1|	-	0.098	12.6	0.3	0.11	12.4	0.2	1.0	1	0	0	1	1	1	0	Oligosaccharide	biosynthesis	protein	Alg14	like
OrfB_Zn_ribbon	PF07282.6	gi|408402737|ref|YP_006860720.1|	-	0.0025	17.4	0.0	0.0041	16.7	0.0	1.4	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
DisA_N	PF02457.11	gi|408402737|ref|YP_006860720.1|	-	0.038	13.1	0.0	0.14	11.3	0.0	1.8	2	0	0	2	2	2	0	DisA	bacterial	checkpoint	controller	nucleotide-binding
DUF2574	PF10836.3	gi|408402737|ref|YP_006860720.1|	-	0.039	13.6	0.2	0.055	13.1	0.2	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2574)
AsnC_trans_reg	PF01037.16	gi|408402738|ref|YP_006860721.1|	-	9.7e-16	57.2	0.1	1.6e-15	56.5	0.1	1.4	1	0	0	1	1	1	1	AsnC	family
HTH_24	PF13412.1	gi|408402738|ref|YP_006860721.1|	-	2.3e-07	30.0	0.3	5.7e-07	28.8	0.1	1.8	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
MarR	PF01047.17	gi|408402738|ref|YP_006860721.1|	-	9.7e-05	22.0	0.1	0.00021	20.8	0.0	1.5	1	0	0	1	1	1	1	MarR	family
B-block_TFIIIC	PF04182.7	gi|408402738|ref|YP_006860721.1|	-	0.00056	19.7	0.4	0.0012	18.6	0.3	1.4	1	1	0	1	1	1	1	B-block	binding	subunit	of	TFIIIC
HTH_AsnC-type	PF13404.1	gi|408402738|ref|YP_006860721.1|	-	0.0023	17.4	0.0	0.0046	16.4	0.0	1.5	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
TrmB	PF01978.14	gi|408402738|ref|YP_006860721.1|	-	0.0024	17.5	0.9	0.0037	16.9	0.1	1.7	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_11	PF08279.7	gi|408402738|ref|YP_006860721.1|	-	0.011	15.3	0.1	0.026	14.1	0.1	1.6	1	0	0	1	1	1	0	HTH	domain
HTH_27	PF13463.1	gi|408402738|ref|YP_006860721.1|	-	0.021	15.1	0.0	0.16	12.3	0.0	2.0	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
MotA_activ	PF09114.5	gi|408402738|ref|YP_006860721.1|	-	0.022	14.4	0.5	0.035	13.8	0.2	1.5	1	1	0	1	1	1	0	Transcription	factor	MotA,	activation	domain
MarR_2	PF12802.2	gi|408402738|ref|YP_006860721.1|	-	0.048	13.3	0.0	0.096	12.3	0.0	1.5	1	0	0	1	1	1	0	MarR	family
GntR	PF00392.16	gi|408402738|ref|YP_006860721.1|	-	0.077	12.4	0.0	2.8	7.4	0.0	2.2	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	gntR	family
Fe_dep_repress	PF01325.14	gi|408402738|ref|YP_006860721.1|	-	0.12	12.3	0.1	0.34	10.8	0.1	1.7	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Ribosomal_S25	PF03297.10	gi|408402738|ref|YP_006860721.1|	-	0.17	11.9	1.5	0.27	11.2	0.2	1.8	2	0	0	2	2	2	0	S25	ribosomal	protein
UbiA	PF01040.13	gi|408402739|ref|YP_006860722.1|	-	1.6e-33	115.9	24.3	2.2e-33	115.5	16.8	1.0	1	0	0	1	1	1	1	UbiA	prenyltransferase	family
Abhydrolase_2	PF02230.11	gi|408402739|ref|YP_006860722.1|	-	0.064	12.6	0.1	0.11	11.9	0.0	1.3	1	0	0	1	1	1	0	Phospholipase/Carboxylesterase
DUF202	PF02656.10	gi|408402739|ref|YP_006860722.1|	-	1.7	8.8	13.9	0.16	12.2	0.2	3.7	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF202)
EMG1	PF03587.9	gi|408402740|ref|YP_006860723.1|	-	1e-47	162.0	0.0	1.2e-47	161.8	0.0	1.0	1	0	0	1	1	1	1	EMG1/NEP1	methyltransferase
Rpr2	PF04032.11	gi|408402742|ref|YP_006860725.1|	-	9.4e-17	60.6	0.4	1.1e-16	60.4	0.3	1.1	1	0	0	1	1	1	1	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
IBR	PF01485.16	gi|408402742|ref|YP_006860725.1|	-	0.026	14.4	0.1	0.036	13.9	0.1	1.3	1	0	0	1	1	1	0	IBR	domain
zf-ribbon_3	PF13248.1	gi|408402742|ref|YP_006860725.1|	-	0.11	11.7	0.2	13	5.1	0.0	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_2	PF13240.1	gi|408402742|ref|YP_006860725.1|	-	0.14	11.6	0.7	16	5.1	0.2	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
HECT_2	PF09814.4	gi|408402742|ref|YP_006860725.1|	-	0.31	9.7	2.0	0.83	8.2	1.4	1.9	1	1	0	1	1	1	0	HECT-like	Ubiquitin-conjugating	enzyme	(E2)-binding
RIG-I_C-RD	PF11648.3	gi|408402742|ref|YP_006860725.1|	-	0.32	10.8	1.5	1.4	8.7	0.1	2.2	1	1	1	2	2	2	0	C-terminal	domain	of	RIG-I
TFIIS_C	PF01096.13	gi|408402742|ref|YP_006860725.1|	-	0.85	9.2	3.4	1.6	8.3	0.1	2.3	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
zinc_ribbon_4	PF13717.1	gi|408402742|ref|YP_006860725.1|	-	1.1	9.0	7.3	3.5	7.3	0.1	3.0	3	1	1	4	4	4	0	zinc-ribbon	domain
zinc_ribbon_5	PF13719.1	gi|408402742|ref|YP_006860725.1|	-	1.4	8.5	7.0	4.2	7.0	0.1	2.9	3	1	0	3	3	3	0	zinc-ribbon	domain
Ribosomal_L44	PF00935.14	gi|408402742|ref|YP_006860725.1|	-	8.5	6.4	9.2	18	5.4	1.8	2.5	1	1	1	2	2	2	0	Ribosomal	protein	L44
OrfB_Zn_ribbon	PF07282.6	gi|408402743|ref|YP_006860726.1|	-	1.5e-19	69.3	2.5	1.5e-19	69.3	1.7	1.8	2	0	0	2	2	2	1	Putative	transposase	DNA-binding	domain
HypA	PF01155.14	gi|408402743|ref|YP_006860726.1|	-	0.0011	18.6	1.6	0.0014	18.2	1.1	1.3	1	0	0	1	1	1	1	Hydrogenase	expression/synthesis	hypA	family
zinc_ribbon_6	PF14599.1	gi|408402743|ref|YP_006860726.1|	-	0.0077	16.0	0.5	0.014	15.2	0.4	1.4	1	0	0	1	1	1	1	Zinc-ribbon
DZR	PF12773.2	gi|408402743|ref|YP_006860726.1|	-	1.3	8.9	10.1	3.3	7.5	7.0	1.7	1	1	0	1	1	1	0	Double	zinc	ribbon
OrfB_IS605	PF01385.14	gi|408402744|ref|YP_006860727.1|	-	1.1e-13	51.1	0.2	1.3e-13	50.8	0.1	1.0	1	0	0	1	1	1	1	Probable	transposase
HTH_OrfB_IS605	PF12323.3	gi|408402745|ref|YP_006860728.1|	-	1.4e-11	43.4	0.1	1.7e-11	43.2	0.1	1.1	1	0	0	1	1	1	1	Helix-turn-helix	domain
Ribosomal_S19e	PF01090.14	gi|408402746|ref|YP_006860729.1|	-	4.4e-51	171.9	0.1	5.1e-51	171.7	0.1	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S19e
GntR	PF00392.16	gi|408402746|ref|YP_006860729.1|	-	0.0094	15.3	0.1	0.022	14.2	0.0	1.7	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
dsDNA_bind	PF01984.15	gi|408402747|ref|YP_006860730.1|	-	2.2e-25	88.7	3.9	2.6e-25	88.4	2.7	1.0	1	0	0	1	1	1	1	Double-stranded	DNA-binding	domain
SF3b1	PF08920.5	gi|408402747|ref|YP_006860730.1|	-	0.023	14.7	0.2	0.026	14.5	0.2	1.4	1	1	0	1	1	1	0	Splicing	factor	3B	subunit	1
DUF1319	PF07028.6	gi|408402747|ref|YP_006860730.1|	-	0.071	13.2	0.9	0.083	13.0	0.6	1.2	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1319)
ADH_zinc_N	PF00107.21	gi|408402748|ref|YP_006860731.1|	-	3.3e-32	110.7	0.1	7.2e-32	109.6	0.1	1.6	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_N	PF08240.7	gi|408402748|ref|YP_006860731.1|	-	3e-26	91.3	0.0	6.2e-26	90.3	0.0	1.6	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N_2	PF13602.1	gi|408402748|ref|YP_006860731.1|	-	9.7e-15	55.5	0.2	2.1e-14	54.4	0.0	1.6	2	0	0	2	2	2	1	Zinc-binding	dehydrogenase
Methyltransf_16	PF10294.4	gi|408402748|ref|YP_006860731.1|	-	0.063	12.7	0.1	0.096	12.1	0.1	1.3	1	0	0	1	1	1	0	Putative	methyltransferase
CMAS	PF02353.15	gi|408402748|ref|YP_006860731.1|	-	0.11	11.6	0.1	0.15	11.0	0.1	1.2	1	0	0	1	1	1	0	Mycolic	acid	cyclopropane	synthetase
HpcH_HpaI	PF03328.9	gi|408402749|ref|YP_006860732.1|	-	3.6e-51	173.1	0.9	4.7e-51	172.7	0.7	1.2	1	0	0	1	1	1	1	HpcH/HpaI	aldolase/citrate	lyase	family
C-C_Bond_Lyase	PF15617.1	gi|408402749|ref|YP_006860732.1|	-	1.3e-18	66.9	0.2	1.2e-08	34.2	0.1	2.1	1	1	0	2	2	2	2	C-C_Bond_Lyase	of	the	TIM-Barrel	fold
PK	PF00224.16	gi|408402749|ref|YP_006860732.1|	-	0.041	12.4	0.2	0.067	11.7	0.1	1.2	1	0	0	1	1	1	0	Pyruvate	kinase,	barrel	domain
Na_H_Exchanger	PF00999.16	gi|408402750|ref|YP_006860733.1|	-	2.9e-61	207.0	52.9	3.4e-61	206.8	36.6	1.0	1	0	0	1	1	1	1	Sodium/hydrogen	exchanger	family
Tautomerase	PF01361.16	gi|408402751|ref|YP_006860734.1|	-	7.5e-16	57.4	0.1	8.9e-16	57.2	0.1	1.0	1	0	0	1	1	1	1	Tautomerase	enzyme
Tautomerase_2	PF14552.1	gi|408402751|ref|YP_006860734.1|	-	4.8e-12	45.7	0.3	5.2e-12	45.6	0.2	1.0	1	0	0	1	1	1	1	Tautomerase	enzyme
Ribosomal_S6	PF01250.12	gi|408402751|ref|YP_006860734.1|	-	0.027	14.2	0.1	0.03	14.1	0.1	1.0	1	0	0	1	1	1	0	Ribosomal	protein	S6
SBF	PF01758.11	gi|408402752|ref|YP_006860735.1|	-	6.7e-13	48.4	14.0	6.7e-13	48.4	9.7	2.1	2	0	0	2	2	2	1	Sodium	Bile	acid	symporter	family
Peptidase_M3	PF01432.15	gi|408402753|ref|YP_006860736.1|	-	2e-42	145.8	1.2	4.1e-42	144.7	0.8	1.5	1	1	0	1	1	1	1	Peptidase	family	M3
Peptidase_M3_N	PF08439.5	gi|408402753|ref|YP_006860736.1|	-	1.2e-10	41.2	0.0	2.2e-09	37.1	0.0	2.9	2	0	0	2	2	2	1	Oligopeptidase	F
Peptidase_MA_2	PF13485.1	gi|408402753|ref|YP_006860736.1|	-	0.0075	16.3	0.1	0.019	14.9	0.1	1.8	1	1	0	1	1	1	1	Peptidase	MA	superfamily
Peptidase_M50B	PF13398.1	gi|408402753|ref|YP_006860736.1|	-	0.14	11.4	0.1	0.23	10.8	0.0	1.2	1	0	0	1	1	1	0	Peptidase	M50B-like
Mrr_cat	PF04471.7	gi|408402754|ref|YP_006860737.1|	-	0.011	15.4	0.0	0.015	15.0	0.0	1.1	1	0	0	1	1	1	0	Restriction	endonuclease
RDD	PF06271.7	gi|408402755|ref|YP_006860738.1|	-	1.9e-19	69.8	5.0	2.4e-19	69.5	3.4	1.1	1	0	0	1	1	1	1	RDD	family
PIG-P	PF08510.7	gi|408402755|ref|YP_006860738.1|	-	0.7	9.5	3.2	1.1	8.8	2.2	1.3	1	0	0	1	1	1	0	PIG-P
AA_permease_2	PF13520.1	gi|408402756|ref|YP_006860739.1|	-	1e-52	179.1	55.3	1.3e-52	178.8	38.3	1.1	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease	PF00324.16	gi|408402756|ref|YP_006860739.1|	-	5.3e-35	120.6	51.4	6.5e-35	120.3	35.6	1.0	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease_C	PF13906.1	gi|408402756|ref|YP_006860739.1|	-	0.64	9.9	0.0	0.64	9.9	0.0	5.8	8	1	0	8	8	8	0	C-terminus	of	AA_permease
CBS	PF00571.23	gi|408402757|ref|YP_006860740.1|	-	1.8e-25	88.4	2.1	1e-12	47.6	0.1	2.1	2	0	0	2	2	2	2	CBS	domain
Acetyltransf_10	PF13673.1	gi|408402757|ref|YP_006860740.1|	-	0.019	15.0	0.0	0.088	12.9	0.0	1.9	1	1	1	2	2	2	0	Acetyltransferase	(GNAT)	domain
Dimer_Tnp_hAT	PF05699.9	gi|408402757|ref|YP_006860740.1|	-	0.071	12.7	0.1	0.13	11.8	0.1	1.4	1	0	0	1	1	1	0	hAT	family	C-terminal	dimerisation	region
CAP	PF00188.21	gi|408402758|ref|YP_006860741.1|	-	0.0062	17.0	0.1	0.014	15.9	0.0	1.6	1	1	0	1	1	1	1	Cysteine-rich	secretory	protein	family
RMMBL	PF07521.7	gi|408402759|ref|YP_006860742.1|	-	1.7e-05	24.5	0.1	2.6e-05	23.9	0.0	1.3	1	0	0	1	1	1	1	RNA-metabolising	metallo-beta-lactamase
SAM_1	PF00536.25	gi|408402759|ref|YP_006860742.1|	-	0.037	14.1	0.1	0.087	13.0	0.0	1.7	1	1	0	1	1	1	0	SAM	domain	(Sterile	alpha	motif)
Lactamase_B_2	PF12706.2	gi|408402760|ref|YP_006860743.1|	-	6.9e-06	25.7	0.0	6.9e-06	25.7	0.0	1.1	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.22	gi|408402760|ref|YP_006860743.1|	-	7.4e-05	22.4	0.9	9.6e-05	22.1	0.6	1.2	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_3	PF13483.1	gi|408402760|ref|YP_006860743.1|	-	0.049	13.3	0.0	0.054	13.2	0.0	1.1	1	0	0	1	1	1	0	Beta-lactamase	superfamily	domain
UCR_Fe-S_N	PF10399.4	gi|408402762|ref|YP_006860745.1|	-	0.094	11.8	0.0	0.16	11.1	0.0	1.4	1	0	0	1	1	1	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
DUF3945	PF13101.1	gi|408402762|ref|YP_006860745.1|	-	0.14	11.4	0.0	0.28	10.4	0.0	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3945)
zf-TFIIB	PF13453.1	gi|408402763|ref|YP_006860746.1|	-	0.0016	17.5	0.8	0.0022	17.1	0.5	1.2	1	0	0	1	1	1	1	Transcription	factor	zinc-finger
DUF2387	PF09526.5	gi|408402763|ref|YP_006860746.1|	-	0.013	15.4	0.2	0.014	15.2	0.1	1.1	1	0	0	1	1	1	0	Probable	metal-binding	protein	(DUF2387)
Zn_Tnp_IS1595	PF12760.2	gi|408402763|ref|YP_006860746.1|	-	0.03	14.1	0.0	0.042	13.6	0.0	1.3	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
Rubredoxin	PF00301.15	gi|408402763|ref|YP_006860746.1|	-	0.042	13.7	0.6	1.5	8.7	0.0	2.1	2	0	0	2	2	2	0	Rubredoxin
zinc-ribbons_6	PF07191.7	gi|408402763|ref|YP_006860746.1|	-	0.044	13.5	0.2	0.063	13.0	0.2	1.3	1	1	0	1	1	1	0	zinc-ribbons
Elf1	PF05129.8	gi|408402763|ref|YP_006860746.1|	-	0.061	13.0	0.2	0.069	12.8	0.1	1.1	1	0	0	1	1	1	0	Transcription	elongation	factor	Elf1	like
Zn-ribbon_8	PF09723.5	gi|408402763|ref|YP_006860746.1|	-	0.082	12.8	0.8	0.18	11.7	0.5	1.7	1	1	0	1	1	1	0	Zinc	ribbon	domain
RNA_POL_M_15KD	PF02150.11	gi|408402763|ref|YP_006860746.1|	-	0.11	12.1	0.9	6.7	6.4	0.1	2.1	2	0	0	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
Inos-1-P_synth	PF01658.12	gi|408402763|ref|YP_006860746.1|	-	0.12	12.1	0.0	0.12	12.1	0.0	1.1	1	0	0	1	1	1	0	Myo-inositol-1-phosphate	synthase
YhfH	PF14149.1	gi|408402763|ref|YP_006860746.1|	-	0.35	10.7	0.0	0.35	10.7	0.0	1.9	2	1	0	2	2	2	0	YhfH-like	protein
DUF1610	PF07754.6	gi|408402763|ref|YP_006860746.1|	-	0.51	10.5	2.7	0.7	10.0	0.0	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1610)
zf-C2H2	PF00096.21	gi|408402763|ref|YP_006860746.1|	-	1.2	9.6	5.1	1.9	8.9	0.2	2.1	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
GTP_cyclohydroI	PF01227.17	gi|408402764|ref|YP_006860747.1|	-	6.2e-63	211.3	0.2	7.2e-63	211.0	0.1	1.0	1	0	0	1	1	1	1	GTP	cyclohydrolase	I
QueF	PF14489.1	gi|408402764|ref|YP_006860747.1|	-	0.0007	19.4	0.0	0.0016	18.3	0.0	1.6	1	0	0	1	1	1	1	QueF-like	protein
Fer4_14	PF13394.1	gi|408402765|ref|YP_006860748.1|	-	5.7e-17	61.8	0.0	8.3e-17	61.3	0.0	1.3	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Radical_SAM	PF04055.16	gi|408402765|ref|YP_006860748.1|	-	1.8e-15	57.5	0.0	2.2e-15	57.1	0.0	1.1	1	0	0	1	1	1	1	Radical	SAM	superfamily
Fer4_12	PF13353.1	gi|408402765|ref|YP_006860748.1|	-	4.7e-15	55.9	0.1	8.3e-15	55.1	0.0	1.4	2	0	0	2	2	2	1	4Fe-4S	single	cluster	domain
QueC	PF06508.8	gi|408402766|ref|YP_006860749.1|	-	6.2e-51	172.6	0.1	7.2e-51	172.4	0.0	1.0	1	0	0	1	1	1	1	Queuosine	biosynthesis	protein	QueC
ThiI	PF02568.9	gi|408402766|ref|YP_006860749.1|	-	0.00069	19.1	0.0	0.0011	18.5	0.0	1.3	1	0	0	1	1	1	1	Thiamine	biosynthesis	protein	(ThiI)
Asn_synthase	PF00733.16	gi|408402766|ref|YP_006860749.1|	-	0.0046	16.4	0.0	0.0059	16.1	0.0	1.2	1	0	0	1	1	1	1	Asparagine	synthase
ApbA_C	PF08546.6	gi|408402766|ref|YP_006860749.1|	-	0.019	14.9	0.0	0.033	14.1	0.0	1.4	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA	C	terminal
Cupin_5	PF06172.6	gi|408402767|ref|YP_006860750.1|	-	3.6e-43	146.8	0.0	4.1e-43	146.6	0.0	1.0	1	0	0	1	1	1	1	Cupin	superfamily	(DUF985)
DUF1155	PF06633.6	gi|408402767|ref|YP_006860750.1|	-	0.11	11.7	0.0	0.27	10.5	0.0	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1155)
MMR_HSR1_C	PF08438.5	gi|408402768|ref|YP_006860751.1|	-	9.2e-31	106.3	0.1	1.5e-30	105.6	0.1	1.3	1	0	0	1	1	1	1	GTPase	of	unknown	function	C-terminal
MMR_HSR1	PF01926.18	gi|408402768|ref|YP_006860751.1|	-	2.5e-18	66.1	0.0	7.1e-18	64.6	0.0	1.8	2	0	0	2	2	2	1	50S	ribosome-binding	GTPase
TGS	PF02824.16	gi|408402768|ref|YP_006860751.1|	-	1.4e-14	53.6	0.1	8.8e-14	51.0	0.0	2.2	2	0	0	2	2	2	1	TGS	domain
FeoB_N	PF02421.13	gi|408402768|ref|YP_006860751.1|	-	3.5e-07	29.6	0.2	3.1e-06	26.5	0.0	2.5	3	0	0	3	3	3	1	Ferrous	iron	transport	protein	B
AAA_29	PF13555.1	gi|408402768|ref|YP_006860751.1|	-	0.0094	15.4	0.0	0.019	14.4	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
ATP_bind_1	PF03029.12	gi|408402768|ref|YP_006860751.1|	-	0.019	14.4	0.0	1.3	8.4	0.0	2.2	2	0	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
YchF-GTPase_C	PF06071.8	gi|408402768|ref|YP_006860751.1|	-	0.019	14.7	0.1	0.073	12.8	0.0	1.9	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF933)
DUF2132	PF09905.4	gi|408402768|ref|YP_006860751.1|	-	0.03	14.2	0.0	0.075	13.0	0.0	1.6	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2132)
UPF0181	PF03701.9	gi|408402768|ref|YP_006860751.1|	-	0.07	12.4	0.3	0.29	10.4	0.0	2.0	2	0	0	2	2	2	0	Uncharacterised	protein	family	(UPF0181)
ThiS	PF02597.15	gi|408402768|ref|YP_006860751.1|	-	0.091	13.1	0.0	0.44	11.0	0.0	2.1	2	0	0	2	2	2	0	ThiS	family
Peptidase_M22	PF00814.20	gi|408402769|ref|YP_006860752.1|	-	4e-76	256.0	0.1	4.8e-76	255.7	0.1	1.0	1	0	0	1	1	1	1	Glycoprotease	family
Flg_hook	PF02120.11	gi|408402769|ref|YP_006860752.1|	-	0.11	12.1	0.0	0.28	10.8	0.0	1.7	1	0	0	1	1	1	0	Flagellar	hook-length	control	protein	FliK
GRAM	PF02893.15	gi|408402770|ref|YP_006860753.1|	-	7.6e-08	31.7	0.0	1.1e-07	31.2	0.0	1.2	1	0	0	1	1	1	1	GRAM	domain
bPH_3	PF14470.1	gi|408402770|ref|YP_006860753.1|	-	3.2e-07	30.5	0.0	7e-07	29.4	0.0	1.5	1	1	0	1	1	1	1	Bacterial	PH	domain
Pkinase	PF00069.20	gi|408402771|ref|YP_006860754.1|	-	2.4e-08	33.4	0.1	4.2e-08	32.6	0.0	1.5	1	1	0	1	1	1	1	Protein	kinase	domain
APH	PF01636.18	gi|408402771|ref|YP_006860754.1|	-	9e-08	32.1	0.0	0.0017	18.1	0.0	2.1	1	1	1	2	2	2	2	Phosphotransferase	enzyme	family
Pkinase_Tyr	PF07714.12	gi|408402771|ref|YP_006860754.1|	-	2.2e-05	23.6	0.0	4.2e-05	22.7	0.0	1.5	1	1	0	1	1	1	1	Protein	tyrosine	kinase
RIO1	PF01163.17	gi|408402771|ref|YP_006860754.1|	-	2.6e-05	23.6	0.3	6.2e-05	22.4	0.2	1.6	1	1	0	1	1	1	1	RIO1	family
Choline_kinase	PF01633.15	gi|408402771|ref|YP_006860754.1|	-	4.5e-05	23.1	0.0	6.2e-05	22.6	0.0	1.2	1	0	0	1	1	1	1	Choline/ethanolamine	kinase
Kdo	PF06293.9	gi|408402771|ref|YP_006860754.1|	-	0.00095	18.2	0.0	0.0017	17.4	0.0	1.6	1	1	0	1	1	1	1	Lipopolysaccharide	kinase	(Kdo/WaaP)	family
Kinase-like	PF14531.1	gi|408402771|ref|YP_006860754.1|	-	0.0065	15.4	0.1	0.045	12.7	0.0	2.0	1	1	1	2	2	2	1	Kinase-like
EcKinase	PF02958.15	gi|408402771|ref|YP_006860754.1|	-	0.016	14.3	0.0	0.017	14.2	0.0	1.2	1	0	0	1	1	1	0	Ecdysteroid	kinase
Fructosamin_kin	PF03881.9	gi|408402771|ref|YP_006860754.1|	-	0.04	12.8	0.0	0.058	12.3	0.0	1.3	1	0	0	1	1	1	0	Fructosamine	kinase
Ham1p_like	PF01725.11	gi|408402772|ref|YP_006860755.1|	-	5.4e-48	162.8	0.0	6.1e-48	162.7	0.0	1.0	1	0	0	1	1	1	1	Ham1	family
Radical_SAM	PF04055.16	gi|408402773|ref|YP_006860756.1|	-	1.4e-19	70.9	0.0	5.4e-19	68.9	0.0	1.8	1	1	0	1	1	1	1	Radical	SAM	superfamily
Wyosine_form	PF08608.7	gi|408402773|ref|YP_006860756.1|	-	6.7e-18	64.5	0.0	2e-17	63.0	0.0	1.8	2	0	0	2	2	2	1	Wyosine	base	formation
Fer4_14	PF13394.1	gi|408402773|ref|YP_006860756.1|	-	0.0042	17.1	0.1	0.024	14.6	0.1	2.2	1	1	0	1	1	1	1	4Fe-4S	single	cluster	domain
NIF3	PF01784.13	gi|408402774|ref|YP_006860757.1|	-	4.4e-17	62.4	0.6	1.3e-16	60.8	0.4	1.7	1	1	0	1	1	1	1	NIF3	(NGG1p	interacting	factor	3)
ADH_zinc_N	PF00107.21	gi|408402774|ref|YP_006860757.1|	-	0.022	14.2	0.2	0.063	12.8	0.2	1.8	1	1	0	1	1	1	0	Zinc-binding	dehydrogenase
PALP	PF00291.20	gi|408402775|ref|YP_006860758.1|	-	7.1e-22	78.0	0.1	1.5e-20	73.7	0.1	2.7	2	1	0	2	2	2	1	Pyridoxal-phosphate	dependent	enzyme
A2M_N	PF01835.14	gi|408402776|ref|YP_006860759.1|	-	1.3e-08	34.9	0.2	5.1e-08	33.0	0.0	2.0	3	0	0	3	3	3	1	MG2	domain
Malectin	PF11721.3	gi|408402776|ref|YP_006860759.1|	-	8.2e-06	25.6	0.1	0.00099	18.9	0.0	2.2	2	0	0	2	2	2	1	Di-glucose	binding	within	endoplasmic	reticulum
M20_dimer	PF07687.9	gi|408402776|ref|YP_006860759.1|	-	0.00072	19.2	0.0	0.21	11.3	0.0	2.3	2	0	0	2	2	2	2	Peptidase	dimerisation	domain
FlgD_ig	PF13860.1	gi|408402776|ref|YP_006860759.1|	-	0.015	14.9	0.2	0.1	12.3	0.1	2.3	2	0	0	2	2	2	0	FlgD	Ig-like	domain
EMP24_GP25L	PF01105.19	gi|408402776|ref|YP_006860759.1|	-	0.017	14.8	0.0	1.1	8.9	0.0	2.3	1	1	1	2	2	2	0	emp24/gp25L/p24	family/GOLD
Big_3_4	PF13754.1	gi|408402776|ref|YP_006860759.1|	-	0.065	13.5	6.2	0.39	11.0	0.2	3.6	3	0	0	3	3	3	0	Bacterial	Ig-like	domain	(group	3)
DUF4493	PF14900.1	gi|408402776|ref|YP_006860759.1|	-	0.4	10.2	4.9	0.57	9.7	0.6	2.5	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4493)
TIG	PF01833.19	gi|408402776|ref|YP_006860759.1|	-	0.64	10.0	3.5	5.7	7.0	0.2	3.1	2	1	1	3	3	3	0	IPT/TIG	domain
RNA_pol_Rpb5_C	PF01191.14	gi|408402777|ref|YP_006860760.1|	-	7.3e-29	99.1	0.8	8.5e-29	98.9	0.6	1.0	1	0	0	1	1	1	1	RNA	polymerase	Rpb5,	C-terminal	domain
CDC48_N	PF02359.13	gi|408402777|ref|YP_006860760.1|	-	0.015	15.2	0.0	0.022	14.7	0.0	1.3	1	0	0	1	1	1	0	Cell	division	protein	48	(CDC48),	N-terminal	domain
Molydop_binding	PF01568.16	gi|408402777|ref|YP_006860760.1|	-	0.075	12.8	0.0	0.12	12.2	0.0	1.4	1	1	0	1	1	1	0	Molydopterin	dinucleotide	binding	domain
RNA_pol_Rpb2_6	PF00562.23	gi|408402778|ref|YP_006860761.1|	-	6e-121	403.8	0.1	9.4e-121	403.1	0.1	1.3	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	6
RNA_pol_Rpb2_1	PF04563.10	gi|408402778|ref|YP_006860761.1|	-	2.6e-54	183.2	0.0	3.9e-54	182.6	0.0	1.3	1	0	0	1	1	1	1	RNA	polymerase	beta	subunit
RNA_pol_Rpb2_7	PF04560.15	gi|408402778|ref|YP_006860761.1|	-	2.5e-30	104.5	0.1	5.8e-30	103.3	0.1	1.7	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	7
RNA_pol_Rpb2_3	PF04565.11	gi|408402778|ref|YP_006860761.1|	-	2.3e-27	94.5	0.0	4.5e-27	93.6	0.0	1.5	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	3
RNA_pol_Rpb2_2	PF04561.9	gi|408402778|ref|YP_006860761.1|	-	5.1e-22	78.2	0.0	9.5e-22	77.3	0.0	1.4	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	2
RNA_pol_Rpb2_4	PF04566.8	gi|408402778|ref|YP_006860761.1|	-	1.6e-14	53.4	0.1	4.9e-14	51.8	0.1	1.9	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	4
RNA_pol_Rpb2_5	PF04567.12	gi|408402778|ref|YP_006860761.1|	-	9.1e-14	51.1	0.3	2.3e-13	49.8	0.2	1.8	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	5
FYVE	PF01363.16	gi|408402778|ref|YP_006860761.1|	-	0.033	14.0	0.1	0.063	13.1	0.1	1.4	1	0	0	1	1	1	0	FYVE	zinc	finger
Zn_Tnp_IS1595	PF12760.2	gi|408402778|ref|YP_006860761.1|	-	0.062	13.1	0.4	0.13	12.0	0.2	1.5	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
DUF2318	PF10080.4	gi|408402778|ref|YP_006860761.1|	-	0.11	12.2	0.4	0.23	11.2	0.3	1.4	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2318)
RNA_pol_Rpb1_5	PF04998.12	gi|408402779|ref|YP_006860762.1|	-	9.6e-88	294.0	0.6	1.7e-87	293.1	0.4	1.4	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	5
RNA_pol_Rpb1_1	PF04997.7	gi|408402779|ref|YP_006860762.1|	-	1e-84	284.7	1.9	4.1e-83	279.4	0.1	2.5	2	1	0	2	2	2	1	RNA	polymerase	Rpb1,	domain	1
RNA_pol_Rpb1_2	PF00623.15	gi|408402779|ref|YP_006860762.1|	-	9.3e-70	233.8	0.0	1.9e-69	232.8	0.0	1.6	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	2
RNA_pol_Rpb1_3	PF04983.13	gi|408402779|ref|YP_006860762.1|	-	2.8e-35	121.3	0.0	9.9e-35	119.5	0.0	2.0	2	0	0	2	2	2	1	RNA	polymerase	Rpb1,	domain	3
RNA_pol_Rpb1_4	PF05000.12	gi|408402779|ref|YP_006860762.1|	-	3.6e-24	84.5	0.4	1.2e-23	82.9	0.0	2.2	2	1	0	2	2	2	1	RNA	polymerase	Rpb1,	domain	4
TniQ	PF06527.6	gi|408402779|ref|YP_006860762.1|	-	0.0013	18.9	0.0	0.77	9.9	0.0	2.7	3	0	0	3	3	3	2	TniQ
NAC	PF01849.13	gi|408402779|ref|YP_006860762.1|	-	0.023	14.1	0.0	0.091	12.2	0.0	2.0	1	0	0	1	1	1	0	NAC	domain
Ribosomal_L7Ae	PF01248.21	gi|408402780|ref|YP_006860763.1|	-	1.7e-11	43.4	2.2	2.1e-11	43.1	1.5	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L7Ae/L30e/S12e/Gadd45	family
KH_2	PF07650.12	gi|408402781|ref|YP_006860764.1|	-	2.9e-23	81.2	1.4	2.5e-15	55.8	0.1	2.1	2	0	0	2	2	2	2	KH	domain
KH_4	PF13083.1	gi|408402781|ref|YP_006860764.1|	-	6.3e-11	41.7	2.5	9.2e-05	22.0	0.3	2.3	2	1	0	2	2	2	2	KH	domain
KH_5	PF13184.1	gi|408402781|ref|YP_006860764.1|	-	4e-10	39.3	3.9	4.5e-09	35.9	0.2	2.3	2	0	0	2	2	2	1	NusA-like	KH	domain
KH_1	PF00013.24	gi|408402781|ref|YP_006860764.1|	-	2.4e-08	33.4	1.3	0.00012	21.6	0.0	2.6	3	0	0	3	3	3	2	KH	domain
KH_3	PF13014.1	gi|408402781|ref|YP_006860764.1|	-	0.0089	15.6	7.1	0.014	14.9	0.2	3.2	3	1	0	3	3	3	1	KH	domain
DUF3979	PF13141.1	gi|408402781|ref|YP_006860764.1|	-	0.041	13.7	0.1	0.064	13.1	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3979)
Ribosom_S12_S23	PF00164.20	gi|408402782|ref|YP_006860765.1|	-	1.1e-39	134.5	0.1	1.3e-39	134.4	0.1	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S12/S23
Ribosomal_S7	PF00177.16	gi|408402783|ref|YP_006860766.1|	-	7.3e-38	129.4	3.1	1.1e-37	128.8	2.2	1.3	1	1	0	1	1	1	1	Ribosomal	protein	S7p/S5e
AAA	PF00004.24	gi|408402785|ref|YP_006860768.1|	-	3.2e-17	62.9	0.2	3e-16	59.8	0.0	2.4	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Rad17	PF03215.10	gi|408402785|ref|YP_006860768.1|	-	1.4e-11	43.8	0.1	0.0006	18.6	0.0	3.1	3	0	0	3	3	3	3	Rad17	cell	cycle	checkpoint	protein
AAA_22	PF13401.1	gi|408402785|ref|YP_006860768.1|	-	2.5e-07	30.8	0.0	2e-05	24.7	0.0	2.7	2	1	0	2	2	1	1	AAA	domain
AAA_17	PF13207.1	gi|408402785|ref|YP_006860768.1|	-	4.8e-07	30.6	0.0	2e-06	28.6	0.0	2.0	2	0	0	2	2	2	1	AAA	domain
AAA_14	PF13173.1	gi|408402785|ref|YP_006860768.1|	-	7.1e-07	29.1	0.0	1.5e-06	28.1	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.1	gi|408402785|ref|YP_006860768.1|	-	8.1e-07	29.2	0.0	0.00014	21.9	0.0	2.4	1	1	1	2	2	2	1	AAA	ATPase	domain
AAA_5	PF07728.9	gi|408402785|ref|YP_006860768.1|	-	3.4e-06	26.8	0.0	1e-05	25.2	0.0	1.8	1	1	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
AAA_19	PF13245.1	gi|408402785|ref|YP_006860768.1|	-	1.3e-05	24.8	0.0	2.4e-05	23.9	0.0	1.4	1	0	0	1	1	1	1	Part	of	AAA	domain
AAA_25	PF13481.1	gi|408402785|ref|YP_006860768.1|	-	7.6e-05	22.1	0.2	0.00023	20.6	0.0	1.8	2	0	0	2	2	1	1	AAA	domain
AAA_33	PF13671.1	gi|408402785|ref|YP_006860768.1|	-	0.00014	21.7	0.0	0.00028	20.7	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
IstB_IS21	PF01695.12	gi|408402785|ref|YP_006860768.1|	-	0.00017	21.0	0.0	0.00029	20.2	0.0	1.4	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
ABC_tran	PF00005.22	gi|408402785|ref|YP_006860768.1|	-	0.0002	21.6	0.0	0.00042	20.6	0.0	1.6	1	0	0	1	1	1	1	ABC	transporter
RuvB_N	PF05496.7	gi|408402785|ref|YP_006860768.1|	-	0.00025	20.1	0.0	0.00057	19.0	0.0	1.6	1	0	0	1	1	1	1	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_28	PF13521.1	gi|408402785|ref|YP_006860768.1|	-	0.00054	19.9	0.0	0.0011	18.9	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
Mg_chelatase	PF01078.16	gi|408402785|ref|YP_006860768.1|	-	0.0014	17.8	0.0	0.0041	16.3	0.0	1.8	2	0	0	2	2	2	1	Magnesium	chelatase,	subunit	ChlI
TIP49	PF06068.8	gi|408402785|ref|YP_006860768.1|	-	0.0016	17.2	0.0	0.007	15.1	0.0	1.9	2	0	0	2	2	2	1	TIP49	C-terminus
AAA_18	PF13238.1	gi|408402785|ref|YP_006860768.1|	-	0.0017	18.6	0.0	0.0034	17.6	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
NACHT	PF05729.7	gi|408402785|ref|YP_006860768.1|	-	0.0031	17.1	0.0	0.026	14.1	0.0	2.3	2	0	0	2	2	2	1	NACHT	domain
AAA_11	PF13086.1	gi|408402785|ref|YP_006860768.1|	-	0.0055	16.3	0.0	0.0074	15.8	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
RNA_helicase	PF00910.17	gi|408402785|ref|YP_006860768.1|	-	0.0056	16.8	0.0	0.019	15.1	0.0	2.0	1	1	0	1	1	1	1	RNA	helicase
AAA_2	PF07724.9	gi|408402785|ref|YP_006860768.1|	-	0.0067	16.3	0.0	0.026	14.4	0.0	1.9	2	0	0	2	2	1	1	AAA	domain	(Cdc48	subfamily)
DUF258	PF03193.11	gi|408402785|ref|YP_006860768.1|	-	0.0087	15.2	0.0	0.016	14.4	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
Zeta_toxin	PF06414.7	gi|408402785|ref|YP_006860768.1|	-	0.01	14.9	0.0	0.019	14.1	0.0	1.3	1	0	0	1	1	1	0	Zeta	toxin
AAA_3	PF07726.6	gi|408402785|ref|YP_006860768.1|	-	0.011	15.3	0.0	0.024	14.2	0.0	1.6	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
T2SE	PF00437.15	gi|408402785|ref|YP_006860768.1|	-	0.012	14.4	0.0	0.022	13.6	0.0	1.3	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
DUF815	PF05673.8	gi|408402785|ref|YP_006860768.1|	-	0.015	14.1	0.0	0.034	13.0	0.0	1.5	2	0	0	2	2	1	0	Protein	of	unknown	function	(DUF815)
Sigma54_activ_2	PF14532.1	gi|408402785|ref|YP_006860768.1|	-	0.017	15.1	0.0	0.036	14.1	0.0	1.6	1	0	0	1	1	1	0	Sigma-54	interaction	domain
Arch_ATPase	PF01637.13	gi|408402785|ref|YP_006860768.1|	-	0.02	14.6	0.0	0.057	13.1	0.0	1.8	1	1	0	1	1	1	0	Archaeal	ATPase
AAA_29	PF13555.1	gi|408402785|ref|YP_006860768.1|	-	0.023	14.2	0.0	0.046	13.2	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_30	PF13604.1	gi|408402785|ref|YP_006860768.1|	-	0.025	14.1	0.0	0.055	13.0	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
NTPase_1	PF03266.10	gi|408402785|ref|YP_006860768.1|	-	0.033	13.9	0.0	0.072	12.8	0.0	1.6	1	0	0	1	1	1	0	NTPase
AAA_24	PF13479.1	gi|408402785|ref|YP_006860768.1|	-	0.034	13.7	0.0	0.12	11.9	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
cobW	PF02492.14	gi|408402785|ref|YP_006860768.1|	-	0.053	12.9	0.0	0.13	11.7	0.0	1.6	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
Miro	PF08477.8	gi|408402785|ref|YP_006860768.1|	-	0.068	13.6	0.0	0.18	12.2	0.0	1.8	1	1	0	1	1	1	0	Miro-like	protein
MobB	PF03205.9	gi|408402785|ref|YP_006860768.1|	-	0.07	12.8	0.0	0.17	11.6	0.0	1.6	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
Sigma54_activat	PF00158.21	gi|408402785|ref|YP_006860768.1|	-	0.1	12.0	0.0	0.42	10.0	0.0	1.9	2	0	0	2	2	2	0	Sigma-54	interaction	domain
SRP54	PF00448.17	gi|408402785|ref|YP_006860768.1|	-	0.11	11.9	0.0	0.2	11.0	0.0	1.4	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
AAA_21	PF13304.1	gi|408402785|ref|YP_006860768.1|	-	0.12	12.3	0.0	0.34	10.8	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
MMR_HSR1	PF01926.18	gi|408402785|ref|YP_006860768.1|	-	0.13	12.2	0.0	0.34	10.8	0.0	1.8	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
UPF0079	PF02367.12	gi|408402785|ref|YP_006860768.1|	-	0.15	11.6	0.0	0.28	10.8	0.0	1.3	1	0	0	1	1	1	0	Uncharacterised	P-loop	hydrolase	UPF0079
C1_1	PF00130.17	gi|408402786|ref|YP_006860769.1|	-	0.03	14.0	0.2	0.03	14.0	0.1	2.6	2	1	0	2	2	2	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
Prok-RING_1	PF14446.1	gi|408402786|ref|YP_006860769.1|	-	0.11	12.2	0.1	0.11	12.2	0.1	2.9	2	1	0	2	2	2	0	Prokaryotic	RING	finger	family	1
zf-dskA_traR	PF01258.12	gi|408402786|ref|YP_006860769.1|	-	0.17	11.6	0.7	0.17	11.6	0.5	3.3	3	1	0	3	3	3	0	Prokaryotic	dksA/traR	C4-type	zinc	finger
zinc_ribbon_2	PF13240.1	gi|408402786|ref|YP_006860769.1|	-	0.45	10.0	0.2	0.45	10.0	0.1	3.7	3	1	0	3	3	3	0	zinc-ribbon	domain
DUF1897	PF09005.5	gi|408402787|ref|YP_006860770.1|	-	0.13	11.7	0.7	0.85	9.1	0.2	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1897)
DUF308	PF03729.8	gi|408402790|ref|YP_006860773.1|	-	0.13	12.3	18.3	0.028	14.4	7.7	2.2	2	0	0	2	2	2	0	Short	repeat	of	unknown	function	(DUF308)
POP1	PF06978.6	gi|408402792|ref|YP_006860775.1|	-	0.04	13.5	0.3	0.053	13.1	0.2	1.2	1	0	0	1	1	1	0	Ribonucleases	P/MRP	protein	subunit	POP1
DUF1193	PF06702.7	gi|408402792|ref|YP_006860775.1|	-	0.074	12.4	0.1	0.14	11.5	0.1	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1193)
CBS	PF00571.23	gi|408402793|ref|YP_006860776.1|	-	3.7e-24	84.2	6.4	6.7e-14	51.3	0.2	2.6	2	1	1	3	3	3	2	CBS	domain
Orbi_VP3	PF01700.11	gi|408402793|ref|YP_006860776.1|	-	0.027	11.9	0.0	0.034	11.5	0.0	1.1	1	0	0	1	1	1	0	Orbivirus	VP3	(T2)	protein
RimK	PF08443.6	gi|408402793|ref|YP_006860776.1|	-	0.044	13.2	1.1	1.8	8.0	0.0	2.3	1	1	0	2	2	2	0	RimK-like	ATP-grasp	domain
zf-C2H2_6	PF13912.1	gi|408402794|ref|YP_006860777.1|	-	7e-05	22.5	0.1	8.6e-05	22.3	0.1	1.2	1	0	0	1	1	1	1	C2H2-type	zinc	finger
zf-C2H2_jaz	PF12171.3	gi|408402794|ref|YP_006860777.1|	-	9.1e-05	22.4	0.2	0.00013	21.9	0.1	1.2	1	0	0	1	1	1	1	Zinc-finger	double-stranded	RNA-binding
zf-met	PF12874.2	gi|408402794|ref|YP_006860777.1|	-	0.00018	21.5	0.1	0.00025	21.1	0.1	1.2	1	0	0	1	1	1	1	Zinc-finger	of	C2H2	type
zf-C2H2	PF00096.21	gi|408402794|ref|YP_006860777.1|	-	0.00038	20.6	0.2	0.00052	20.1	0.2	1.2	1	0	0	1	1	1	1	Zinc	finger,	C2H2	type
PRP21_like_P	PF12230.3	gi|408402794|ref|YP_006860777.1|	-	0.018	14.5	0.4	0.021	14.3	0.3	1.1	1	0	0	1	1	1	0	Pre-mRNA	splicing	factor	PRP21	like	protein
NUMOD1	PF07453.8	gi|408402794|ref|YP_006860777.1|	-	0.026	14.3	0.0	0.044	13.6	0.0	1.4	1	0	0	1	1	1	0	NUMOD1	domain
zf-C2H2_4	PF13894.1	gi|408402794|ref|YP_006860777.1|	-	0.068	13.5	0.1	0.097	13.0	0.1	1.2	1	0	0	1	1	1	0	C2H2-type	zinc	finger
zf-H2C2_2	PF13465.1	gi|408402794|ref|YP_006860777.1|	-	0.35	11.2	2.5	17	5.9	0.4	2.2	2	0	0	2	2	2	0	Zinc-finger	double	domain
KGG	PF10685.4	gi|408402795|ref|YP_006860778.1|	-	8.1e-14	51.1	36.5	5e-05	23.1	1.9	5.7	3	2	2	6	6	6	5	Stress-induced	bacterial	acidophilic	repeat	motif
LEA_5	PF00477.12	gi|408402795|ref|YP_006860778.1|	-	0.0053	17.0	15.8	0.016	15.4	8.9	2.4	1	1	1	2	2	2	1	Small	hydrophilic	plant	seed	protein
WYL	PF13280.1	gi|408402796|ref|YP_006860779.1|	-	0.00019	21.3	0.1	0.0019	18.1	0.0	2.0	2	0	0	2	2	2	1	WYL	domain
zf-C2H2	PF00096.21	gi|408402796|ref|YP_006860779.1|	-	0.00062	19.9	0.2	0.0012	19.0	0.1	1.5	1	0	0	1	1	1	1	Zinc	finger,	C2H2	type
zf-met	PF12874.2	gi|408402796|ref|YP_006860779.1|	-	0.067	13.4	0.0	0.12	12.6	0.0	1.4	1	0	0	1	1	1	0	Zinc-finger	of	C2H2	type
DNA_RNApol_7kD	PF03604.8	gi|408402796|ref|YP_006860779.1|	-	0.12	11.8	0.4	0.24	10.8	0.3	1.4	1	0	0	1	1	1	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
zf-FCS	PF06467.9	gi|408402796|ref|YP_006860779.1|	-	0.14	11.8	0.0	0.28	10.8	0.0	1.5	1	0	0	1	1	1	0	MYM-type	Zinc	finger	with	FCS	sequence	motif
HATPase_c_3	PF13589.1	gi|408402798|ref|YP_006860781.1|	-	4.4e-11	42.5	0.1	6.2e-11	42.0	0.1	1.3	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c	PF02518.21	gi|408402798|ref|YP_006860781.1|	-	4.6e-06	26.3	0.3	0.00016	21.3	0.1	2.2	2	0	0	2	2	2	2	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
MS_channel	PF00924.13	gi|408402799|ref|YP_006860782.1|	-	7.6e-12	44.9	3.4	7.6e-12	44.9	2.3	2.7	3	0	0	3	3	3	1	Mechanosensitive	ion	channel
zf-C2H2_4	PF13894.1	gi|408402802|ref|YP_006860785.1|	-	0.0055	16.9	0.1	0.012	15.9	0.1	1.5	1	0	0	1	1	1	1	C2H2-type	zinc	finger
zf-C2H2	PF00096.21	gi|408402802|ref|YP_006860785.1|	-	0.031	14.6	0.1	0.073	13.4	0.1	1.7	1	0	0	1	1	1	0	Zinc	finger,	C2H2	type
zf-met	PF12874.2	gi|408402802|ref|YP_006860785.1|	-	0.068	13.3	0.2	0.13	12.5	0.2	1.4	1	0	0	1	1	1	0	Zinc-finger	of	C2H2	type
zf-DBF	PF07535.7	gi|408402802|ref|YP_006860785.1|	-	0.14	11.8	0.2	0.23	11.1	0.1	1.3	1	0	0	1	1	1	0	DBF	zinc	finger
DUF3042	PF11240.3	gi|408402803|ref|YP_006860786.1|	-	0.064	13.0	1.4	0.064	13.0	0.9	2.0	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF3042)
DUF2795	PF11387.3	gi|408402804|ref|YP_006860787.1|	-	2.7e-18	65.5	0.7	3.8e-08	33.0	0.0	3.0	2	1	0	2	2	2	2	Protein	of	unknown	function	(DUF2795)
zf-C2H2_4	PF13894.1	gi|408402804|ref|YP_006860787.1|	-	0.00053	20.1	0.7	0.00092	19.3	0.1	1.7	2	0	0	2	2	2	1	C2H2-type	zinc	finger
zf-C2H2	PF00096.21	gi|408402804|ref|YP_006860787.1|	-	0.00061	19.9	0.5	0.0013	18.9	0.3	1.6	1	0	0	1	1	1	1	Zinc	finger,	C2H2	type
E1-N	PF14463.1	gi|408402804|ref|YP_006860787.1|	-	0.013	15.1	0.1	0.016	14.8	0.0	1.2	1	0	0	1	1	1	0	E1	N-terminal	domain
zf-Di19	PF05605.7	gi|408402804|ref|YP_006860787.1|	-	0.029	14.5	0.1	0.05	13.7	0.1	1.4	1	0	0	1	1	1	0	Drought	induced	19	protein	(Di19),	zinc-binding
zf-C2H2_2	PF12756.2	gi|408402804|ref|YP_006860787.1|	-	0.19	11.8	0.3	0.52	10.4	0.0	1.9	2	1	1	3	3	3	0	C2H2	type	zinc-finger	(2	copies)
DUF2795	PF11387.3	gi|408402805|ref|YP_006860788.1|	-	5.6e-10	38.9	0.0	1.6e-09	37.4	0.0	1.8	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF2795)
CD99L2	PF12301.3	gi|408402806|ref|YP_006860789.1|	-	0.038	13.6	1.0	0.039	13.6	0.7	1.0	1	0	0	1	1	1	0	CD99	antigen	like	protein	2
DUF2795	PF11387.3	gi|408402808|ref|YP_006860791.1|	-	7.5e-05	22.5	0.3	0.0004	20.1	0.0	2.3	2	1	0	2	2	2	1	Protein	of	unknown	function	(DUF2795)
ABC_tran_2	PF12848.2	gi|408402809|ref|YP_006860792.1|	-	0.12	12.1	0.1	0.12	12.1	0.0	1.2	1	0	0	1	1	1	0	ABC	transporter
TMF_DNA_bd	PF12329.3	gi|408402809|ref|YP_006860792.1|	-	0.15	11.9	3.9	0.57	10.0	2.7	1.8	1	1	0	1	1	1	0	TATA	element	modulatory	factor	1	DNA	binding
Carboxyl_trans	PF01039.17	gi|408402810|ref|YP_006860793.1|	-	5.9e-190	631.7	0.3	6.7e-190	631.6	0.2	1.0	1	0	0	1	1	1	1	Carboxyl	transferase	domain
MdcE	PF06833.6	gi|408402810|ref|YP_006860793.1|	-	2.1e-05	23.8	0.0	0.00014	21.1	0.0	2.0	2	0	0	2	2	2	1	Malonate	decarboxylase	gamma	subunit	(MdcE)
ParA	PF10609.4	gi|408402810|ref|YP_006860793.1|	-	0.083	12.7	0.0	13	5.7	0.0	3.3	2	1	1	3	3	3	0	ParA/MinD	ATPase	like
CPSase_L_D2	PF02786.12	gi|408402811|ref|YP_006860794.1|	-	2.6e-74	249.0	0.1	4.1e-74	248.4	0.0	1.3	1	0	0	1	1	1	1	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
CPSase_L_chain	PF00289.17	gi|408402811|ref|YP_006860794.1|	-	6.2e-43	145.3	0.4	1e-41	141.4	0.2	2.3	2	0	0	2	2	2	1	Carbamoyl-phosphate	synthase	L	chain,	N-terminal	domain
Biotin_carb_C	PF02785.14	gi|408402811|ref|YP_006860794.1|	-	6.8e-35	119.2	0.0	1.5e-34	118.1	0.0	1.6	1	0	0	1	1	1	1	Biotin	carboxylase	C-terminal	domain
ATP-grasp_4	PF13535.1	gi|408402811|ref|YP_006860794.1|	-	5.2e-18	65.4	0.5	1.2e-17	64.2	0.1	1.8	2	0	0	2	2	2	1	ATP-grasp	domain
ATPgrasp_Ter	PF15632.1	gi|408402811|ref|YP_006860794.1|	-	4.2e-15	55.3	0.1	8.8e-09	34.5	0.0	2.1	2	0	0	2	2	2	2	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
RimK	PF08443.6	gi|408402811|ref|YP_006860794.1|	-	3.7e-10	39.5	0.0	5.6e-07	29.2	0.0	2.4	2	0	0	2	2	2	2	RimK-like	ATP-grasp	domain
Dala_Dala_lig_C	PF07478.8	gi|408402811|ref|YP_006860794.1|	-	6.7e-07	28.9	0.0	2.3e-06	27.1	0.0	1.9	1	1	0	1	1	1	1	D-ala	D-ala	ligase	C-terminus
ATP-grasp	PF02222.17	gi|408402811|ref|YP_006860794.1|	-	1.1e-06	28.0	0.0	2.3e-06	27.0	0.0	1.5	1	0	0	1	1	1	1	ATP-grasp	domain
ATP-grasp_3	PF02655.9	gi|408402811|ref|YP_006860794.1|	-	7.4e-06	25.9	0.0	4.5e-05	23.3	0.0	2.2	1	1	0	1	1	1	1	ATP-grasp	domain
ATPgrasp_YheCD	PF14398.1	gi|408402811|ref|YP_006860794.1|	-	0.022	13.5	0.0	0.076	11.7	0.0	1.8	2	0	0	2	2	2	0	YheC/D	like	ATP-grasp
DUF2057	PF09829.4	gi|408402811|ref|YP_006860794.1|	-	0.05	13.2	0.3	37	3.9	0.0	3.1	3	0	0	3	3	3	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2057)
DUF4019	PF13211.1	gi|408402811|ref|YP_006860794.1|	-	0.66	10.2	0.0	0.66	10.2	0.0	2.8	4	0	0	4	4	3	0	Protein	of	unknown	function	(DUF4019)
Biotin_lipoyl	PF00364.17	gi|408402812|ref|YP_006860795.1|	-	3.1e-16	58.7	4.0	5.9e-16	57.8	2.8	1.5	1	0	0	1	1	1	1	Biotin-requiring	enzyme
Biotin_lipoyl_2	PF13533.1	gi|408402812|ref|YP_006860795.1|	-	1.1e-13	50.5	3.4	8.6e-10	38.1	0.3	2.5	1	1	1	2	2	2	2	Biotin-lipoyl	like
HlyD	PF00529.15	gi|408402812|ref|YP_006860795.1|	-	6.7e-06	25.6	3.4	0.00045	19.6	0.3	2.3	1	1	1	2	2	2	2	HlyD	family	secretion	protein
HlyD_2	PF12700.2	gi|408402812|ref|YP_006860795.1|	-	8.8e-06	25.0	3.1	0.033	13.3	0.1	2.4	2	1	1	3	3	3	2	HlyD	family	secretion	protein
HlyD_3	PF13437.1	gi|408402812|ref|YP_006860795.1|	-	0.00095	19.4	1.7	1.7	8.9	0.0	3.0	3	1	0	3	3	3	2	HlyD	family	secretion	protein
DUF2118	PF09891.4	gi|408402812|ref|YP_006860795.1|	-	0.011	15.4	0.8	0.048	13.3	0.3	2.1	1	1	0	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2118)
GCV_H	PF01597.14	gi|408402812|ref|YP_006860795.1|	-	0.015	14.9	1.3	0.04	13.5	0.8	1.8	1	1	0	1	1	1	0	Glycine	cleavage	H-protein
Activator-TraM	PF11657.3	gi|408402812|ref|YP_006860795.1|	-	0.018	14.4	0.5	0.32	10.4	0.1	2.2	1	1	1	2	2	2	0	Transcriptional	activator	TraM
CopK	PF11525.3	gi|408402812|ref|YP_006860795.1|	-	0.027	14.0	1.5	0.085	12.5	0.0	2.3	2	1	0	2	2	2	0	Copper	resistance	protein	K
PYNP_C	PF07831.8	gi|408402812|ref|YP_006860795.1|	-	0.043	13.2	1.6	0.32	10.4	0.2	2.3	2	0	0	2	2	2	0	Pyrimidine	nucleoside	phosphorylase	C-terminal	domain
Methyltransf_21	PF05050.7	gi|408402813|ref|YP_006860796.1|	-	2.3e-16	60.1	0.0	3.6e-16	59.5	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	FkbM	domain
Methyltransf_18	PF12847.2	gi|408402813|ref|YP_006860796.1|	-	6e-08	33.2	0.0	1.3e-07	32.2	0.0	1.6	1	1	0	1	1	1	1	Methyltransferase	domain
Met_10	PF02475.11	gi|408402813|ref|YP_006860796.1|	-	1.6e-07	31.0	0.1	6e-07	29.2	0.0	1.7	2	0	0	2	2	2	1	Met-10+	like-protein
Methyltransf_31	PF13847.1	gi|408402813|ref|YP_006860796.1|	-	1.5e-06	27.9	0.2	1e-05	25.1	0.0	2.0	2	0	0	2	2	2	1	Methyltransferase	domain
PCMT	PF01135.14	gi|408402813|ref|YP_006860796.1|	-	1.1e-05	25.1	0.0	1.8e-05	24.3	0.0	1.3	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
V_cholerae_RfbT	PF05575.6	gi|408402813|ref|YP_006860796.1|	-	7.5e-05	21.9	0.0	0.00016	20.8	0.0	1.4	1	1	0	1	1	1	1	Vibrio	cholerae	RfbT	protein
FtsJ	PF01728.14	gi|408402813|ref|YP_006860796.1|	-	0.00011	22.2	0.0	0.00017	21.6	0.0	1.4	1	1	0	1	1	1	1	FtsJ-like	methyltransferase
Methyltransf_26	PF13659.1	gi|408402813|ref|YP_006860796.1|	-	0.00024	21.1	0.0	0.00037	20.5	0.0	1.5	1	1	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.9	gi|408402813|ref|YP_006860796.1|	-	0.00051	19.4	0.0	0.0008	18.8	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
Ubie_methyltran	PF01209.13	gi|408402813|ref|YP_006860796.1|	-	0.0051	15.9	0.0	0.0087	15.2	0.0	1.3	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_23	PF13489.1	gi|408402813|ref|YP_006860796.1|	-	0.0062	16.2	0.0	0.0096	15.6	0.0	1.4	1	1	0	1	1	1	1	Methyltransferase	domain
GCD14	PF08704.5	gi|408402813|ref|YP_006860796.1|	-	0.01	15.3	0.0	0.016	14.7	0.0	1.3	1	0	0	1	1	1	0	tRNA	methyltransferase	complex	GCD14	subunit
Methyltransf_11	PF08241.7	gi|408402813|ref|YP_006860796.1|	-	0.023	15.2	0.0	0.06	13.8	0.0	1.9	1	1	0	1	1	1	0	Methyltransferase	domain
Methyltransf_22	PF13383.1	gi|408402813|ref|YP_006860796.1|	-	0.067	12.7	0.0	0.088	12.3	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	domain
CarD_CdnL_TRCF	PF02559.11	gi|408402813|ref|YP_006860796.1|	-	0.088	12.8	0.0	0.19	11.8	0.0	1.7	1	1	0	1	1	1	0	CarD-like/TRCF	domain
DOT1	PF08123.8	gi|408402813|ref|YP_006860796.1|	-	0.091	12.0	0.0	0.18	11.0	0.0	1.5	1	0	0	1	1	1	0	Histone	methylation	protein	DOT1
Methyltransf_3	PF01596.12	gi|408402813|ref|YP_006860796.1|	-	0.11	11.5	0.0	0.22	10.5	0.0	1.4	1	0	0	1	1	1	0	O-methyltransferase
AhpC-TSA	PF00578.16	gi|408402814|ref|YP_006860797.1|	-	2.5e-36	124.1	0.0	2.9e-36	123.8	0.0	1.1	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.5	gi|408402814|ref|YP_006860797.1|	-	3.6e-24	84.9	0.0	4.4e-24	84.6	0.0	1.0	1	0	0	1	1	1	1	Redoxin
Thioredoxin_8	PF13905.1	gi|408402814|ref|YP_006860797.1|	-	0.0023	18.0	0.0	0.0044	17.1	0.0	1.5	1	1	0	1	1	1	1	Thioredoxin-like
AhpC-TSA_2	PF13911.1	gi|408402814|ref|YP_006860797.1|	-	0.0063	16.4	0.0	0.12	12.3	0.0	2.1	1	1	0	1	1	1	1	AhpC/TSA	antioxidant	enzyme
Aminotran_5	PF00266.14	gi|408402815|ref|YP_006860798.1|	-	4.7e-94	315.1	0.0	5.5e-94	314.9	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class-V
Beta_elim_lyase	PF01212.16	gi|408402815|ref|YP_006860798.1|	-	3.5e-08	32.9	0.0	4.6e-08	32.5	0.0	1.2	1	0	0	1	1	1	1	Beta-eliminating	lyase
NAD_synthase	PF02540.12	gi|408402816|ref|YP_006860799.1|	-	3.1e-10	39.3	0.1	1.2e-09	37.4	0.0	1.8	2	0	0	2	2	2	1	NAD	synthase
tRNA_Me_trans	PF03054.11	gi|408402816|ref|YP_006860799.1|	-	1.3e-09	37.0	0.1	3.2e-07	29.2	0.1	2.2	2	0	0	2	2	2	2	tRNA	methyl	transferase
Asn_synthase	PF00733.16	gi|408402816|ref|YP_006860799.1|	-	1.6e-09	37.6	0.0	2.5e-09	37.0	0.0	1.3	1	0	0	1	1	1	1	Asparagine	synthase
QueC	PF06508.8	gi|408402816|ref|YP_006860799.1|	-	2.6e-09	36.6	0.1	1.2e-08	34.5	0.0	2.0	3	0	0	3	3	3	1	Queuosine	biosynthesis	protein	QueC
ATP_bind_3	PF01171.15	gi|408402816|ref|YP_006860799.1|	-	3.7e-06	26.5	0.1	8.5e-05	22.1	0.1	2.3	1	1	0	2	2	2	1	PP-loop	family
ThiI	PF02568.9	gi|408402816|ref|YP_006860799.1|	-	0.0016	17.9	0.1	0.0035	16.8	0.1	1.6	1	1	0	1	1	1	1	Thiamine	biosynthesis	protein	(ThiI)
Arginosuc_synth	PF00764.14	gi|408402816|ref|YP_006860799.1|	-	0.003	16.6	0.6	0.013	14.5	0.4	1.9	1	1	0	1	1	1	1	Arginosuccinate	synthase
AAA_33	PF13671.1	gi|408402816|ref|YP_006860799.1|	-	0.013	15.4	0.0	0.19	11.6	0.0	2.1	1	1	1	2	2	2	0	AAA	domain
BON	PF04972.12	gi|408402816|ref|YP_006860799.1|	-	0.083	12.6	5.1	6.7	6.5	0.1	3.4	3	0	0	3	3	3	0	BON	domain
DUF4250	PF14056.1	gi|408402816|ref|YP_006860799.1|	-	0.089	12.5	0.0	0.28	10.9	0.0	1.8	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4250)
DUF111	PF01969.12	gi|408402817|ref|YP_006860800.1|	-	4.1e-102	341.8	1.1	4.6e-102	341.6	0.8	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF111
Herpes_US9	PF06072.6	gi|408402818|ref|YP_006860801.1|	-	0.045	13.5	0.3	0.081	12.7	0.2	1.3	1	0	0	1	1	1	0	Alphaherpesvirus	tegument	protein	US9
PHP	PF02811.14	gi|408402818|ref|YP_006860801.1|	-	0.071	12.9	0.0	0.089	12.5	0.0	1.4	1	1	0	1	1	1	0	PHP	domain
DUF4448	PF14610.1	gi|408402818|ref|YP_006860801.1|	-	0.082	12.3	0.0	0.17	11.3	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4448)
Lamp	PF01299.12	gi|408402818|ref|YP_006860801.1|	-	0.082	12.0	0.0	0.12	11.4	0.0	1.2	1	0	0	1	1	1	0	Lysosome-associated	membrane	glycoprotein	(Lamp)
Ldh_1_N	PF00056.18	gi|408402819|ref|YP_006860802.1|	-	8.7e-38	129.3	0.8	2.4e-37	127.8	0.5	1.8	1	0	0	1	1	1	1	lactate/malate	dehydrogenase,	NAD	binding	domain
Ldh_1_C	PF02866.13	gi|408402819|ref|YP_006860802.1|	-	1.3e-24	86.8	0.1	1.8e-24	86.4	0.0	1.2	1	0	0	1	1	1	1	lactate/malate	dehydrogenase,	alpha/beta	C-terminal	domain
Glyco_hydro_4	PF02056.11	gi|408402819|ref|YP_006860802.1|	-	0.041	13.1	0.4	0.48	9.7	0.1	2.2	1	1	1	2	2	2	0	Family	4	glycosyl	hydrolase
UDPG_MGDP_dh_N	PF03721.9	gi|408402819|ref|YP_006860802.1|	-	0.065	12.6	1.3	0.16	11.3	0.4	2.0	2	1	0	2	2	2	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
AIRC	PF00731.15	gi|408402820|ref|YP_006860803.1|	-	1.7e-20	72.8	9.9	2.5e-20	72.2	6.9	1.3	1	0	0	1	1	1	1	AIR	carboxylase
RP1-2	PF12042.3	gi|408402820|ref|YP_006860803.1|	-	8.5	6.0	9.4	17	5.0	3.2	2.4	1	1	1	2	2	2	0	Tubuliform	egg	casing	silk	strands	structural	domain
Ribosomal_L18p	PF00861.17	gi|408402821|ref|YP_006860804.1|	-	2.8e-23	82.3	0.1	2.8e-23	82.3	0.1	1.9	2	0	0	2	2	2	1	Ribosomal	L18p/L5e	family
Ribosomal_L18_c	PF14204.1	gi|408402821|ref|YP_006860804.1|	-	1.5e-08	35.0	20.0	1.3e-06	28.8	13.8	2.3	1	1	0	1	1	1	1	Ribosomal	L18	C-terminal	region
RNA_polI_A34	PF08208.6	gi|408402821|ref|YP_006860804.1|	-	0.2	11.3	26.4	0.27	10.8	18.3	1.3	1	0	0	1	1	1	0	DNA-directed	RNA	polymerase	I	subunit	RPA34.5
RNase_H2-Ydr279	PF09468.5	gi|408402821|ref|YP_006860804.1|	-	1.5	7.9	16.5	1.9	7.5	11.4	1.2	1	0	0	1	1	1	0	Ydr279p	protein	family	(RNase	H2	complex	component)
DDHD	PF02862.12	gi|408402821|ref|YP_006860804.1|	-	2.4	7.8	7.5	3.2	7.5	5.2	1.2	1	0	0	1	1	1	0	DDHD	domain
GAGA_bind	PF06217.7	gi|408402821|ref|YP_006860804.1|	-	2.9	7.7	11.3	3.6	7.4	7.8	1.2	1	0	0	1	1	1	0	GAGA	binding	protein-like	family
RR_TM4-6	PF06459.7	gi|408402821|ref|YP_006860804.1|	-	3.1	7.6	17.9	4.1	7.2	12.4	1.2	1	0	0	1	1	1	0	Ryanodine	Receptor	TM	4-6
DUF1510	PF07423.6	gi|408402821|ref|YP_006860804.1|	-	5	6.4	17.1	6.7	6.0	11.9	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1510)
CT47	PF15623.1	gi|408402821|ref|YP_006860804.1|	-	7.2	6.2	20.6	8.8	5.9	14.3	1.3	1	0	0	1	1	1	0	Cancer/testis	gene	family	47
Ribosomal_S5_C	PF03719.10	gi|408402822|ref|YP_006860805.1|	-	2.4e-19	68.3	0.2	3.9e-19	67.6	0.1	1.4	1	0	0	1	1	1	1	Ribosomal	protein	S5,	C-terminal	domain
Ribosomal_S5	PF00333.15	gi|408402822|ref|YP_006860805.1|	-	7.5e-18	64.0	1.3	1.5e-17	63.0	0.9	1.5	1	0	0	1	1	1	1	Ribosomal	protein	S5,	N-terminal	domain
Ribosomal_L30	PF00327.15	gi|408402823|ref|YP_006860806.1|	-	1.2e-13	50.3	0.0	1.9e-13	49.7	0.0	1.3	1	0	0	1	1	1	1	Ribosomal	protein	L30p/L7e
Ribosomal_L18e	PF00828.14	gi|408402824|ref|YP_006860807.1|	-	1.6e-22	80.2	0.3	2e-22	79.9	0.2	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L18e/L15
SecY	PF00344.15	gi|408402825|ref|YP_006860808.1|	-	1.5e-83	280.6	17.2	1.9e-83	280.3	11.9	1.1	1	0	0	1	1	1	1	SecY	translocase
Plug_translocon	PF10559.4	gi|408402825|ref|YP_006860808.1|	-	2.9e-11	42.6	0.5	1e-10	40.9	0.4	2.0	1	0	0	1	1	1	1	Plug	domain	of	Sec61p
AAA_18	PF13238.1	gi|408402826|ref|YP_006860809.1|	-	2.4e-12	47.2	0.1	3.5e-12	46.7	0.1	1.1	1	0	0	1	1	1	1	AAA	domain
AAA_17	PF13207.1	gi|408402826|ref|YP_006860809.1|	-	1.9e-06	28.6	0.0	3.5e-06	27.8	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
SRP54	PF00448.17	gi|408402826|ref|YP_006860809.1|	-	3.1e-06	26.7	0.3	4.6e-06	26.2	0.2	1.4	1	1	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
AAA_28	PF13521.1	gi|408402826|ref|YP_006860809.1|	-	6.5e-05	22.9	0.6	0.00014	21.8	0.4	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_22	PF13401.1	gi|408402826|ref|YP_006860809.1|	-	0.00016	21.8	0.1	0.00039	20.5	0.0	1.6	1	1	0	1	1	1	1	AAA	domain
AAA	PF00004.24	gi|408402826|ref|YP_006860809.1|	-	0.0002	21.5	0.5	0.00048	20.3	0.1	1.7	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
MMR_HSR1	PF01926.18	gi|408402826|ref|YP_006860809.1|	-	0.00027	20.8	0.0	0.00039	20.3	0.0	1.3	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
AAA_19	PF13245.1	gi|408402826|ref|YP_006860809.1|	-	0.00028	20.5	0.6	0.0015	18.2	0.1	2.4	2	0	0	2	2	2	1	Part	of	AAA	domain
AAA_33	PF13671.1	gi|408402826|ref|YP_006860809.1|	-	0.0003	20.7	0.1	0.00044	20.1	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
NTPase_1	PF03266.10	gi|408402826|ref|YP_006860809.1|	-	0.00045	19.9	0.1	0.00072	19.2	0.1	1.4	1	0	0	1	1	1	1	NTPase
AAA_5	PF07728.9	gi|408402826|ref|YP_006860809.1|	-	0.0008	19.1	0.6	0.0015	18.2	0.4	1.8	1	1	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
MobB	PF03205.9	gi|408402826|ref|YP_006860809.1|	-	0.001	18.7	1.0	0.0024	17.5	0.7	1.8	1	1	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
Arch_ATPase	PF01637.13	gi|408402826|ref|YP_006860809.1|	-	0.0014	18.4	0.0	0.0014	18.3	0.0	1.3	1	0	0	1	1	1	1	Archaeal	ATPase
KTI12	PF08433.5	gi|408402826|ref|YP_006860809.1|	-	0.0016	17.7	0.1	0.0022	17.2	0.0	1.2	1	0	0	1	1	1	1	Chromatin	associated	protein	KTI12
Zeta_toxin	PF06414.7	gi|408402826|ref|YP_006860809.1|	-	0.0025	16.9	0.1	0.005	15.9	0.1	1.4	1	0	0	1	1	1	1	Zeta	toxin
AAA_30	PF13604.1	gi|408402826|ref|YP_006860809.1|	-	0.0029	17.2	0.4	0.0029	17.2	0.3	2.7	3	1	0	3	3	3	1	AAA	domain
Viral_helicase1	PF01443.13	gi|408402826|ref|YP_006860809.1|	-	0.003	17.1	0.0	0.0048	16.4	0.0	1.4	1	0	0	1	1	1	1	Viral	(Superfamily	1)	RNA	helicase
Miro	PF08477.8	gi|408402826|ref|YP_006860809.1|	-	0.0031	18.0	0.1	0.0071	16.8	0.0	1.6	1	0	0	1	1	1	1	Miro-like	protein
cobW	PF02492.14	gi|408402826|ref|YP_006860809.1|	-	0.0039	16.6	1.9	0.0056	16.1	0.5	2.2	1	1	0	2	2	2	1	CobW/HypB/UreG,	nucleotide-binding	domain
KdpD	PF02702.12	gi|408402826|ref|YP_006860809.1|	-	0.0056	15.8	1.5	0.0079	15.3	0.3	1.6	2	0	0	2	2	2	1	Osmosensitive	K+	channel	His	kinase	sensor	domain
AAA_16	PF13191.1	gi|408402826|ref|YP_006860809.1|	-	0.0099	15.8	0.0	0.013	15.4	0.0	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_14	PF13173.1	gi|408402826|ref|YP_006860809.1|	-	0.011	15.5	0.1	0.021	14.6	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
Metallophos_3	PF14582.1	gi|408402826|ref|YP_006860809.1|	-	0.017	14.2	0.1	0.031	13.4	0.1	1.4	1	0	0	1	1	1	0	Metallophosphoesterase,	calcineurin	superfamily
ATP_bind_1	PF03029.12	gi|408402826|ref|YP_006860809.1|	-	0.017	14.6	1.4	0.025	14.1	0.2	1.8	3	0	0	3	3	3	0	Conserved	hypothetical	ATP	binding	protein
AAA_24	PF13479.1	gi|408402826|ref|YP_006860809.1|	-	0.023	14.2	0.7	0.039	13.5	0.1	1.8	2	1	0	2	2	2	0	AAA	domain
DnaB_C	PF03796.10	gi|408402826|ref|YP_006860809.1|	-	0.025	13.4	2.0	0.037	12.8	1.4	1.4	1	1	0	1	1	1	0	DnaB-like	helicase	C	terminal	domain
AAA_11	PF13086.1	gi|408402826|ref|YP_006860809.1|	-	0.026	14.1	4.6	0.33	10.4	0.1	2.5	1	1	1	2	2	2	0	AAA	domain
SpoIISA_toxin	PF14171.1	gi|408402826|ref|YP_006860809.1|	-	0.026	13.7	0.0	0.034	13.3	0.0	1.1	1	0	0	1	1	1	0	Toxin	SpoIISA,	type	II	toxin-antitoxin	system
ArgK	PF03308.11	gi|408402826|ref|YP_006860809.1|	-	0.034	12.9	0.0	0.051	12.3	0.0	1.5	1	0	0	1	1	1	0	ArgK	protein
APS_kinase	PF01583.15	gi|408402826|ref|YP_006860809.1|	-	0.038	13.6	0.3	0.068	12.8	0.1	1.5	2	0	0	2	2	1	0	Adenylylsulphate	kinase
ResIII	PF04851.10	gi|408402826|ref|YP_006860809.1|	-	0.041	13.7	0.8	0.075	12.8	0.3	1.7	2	1	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
Thymidylate_kin	PF02223.12	gi|408402826|ref|YP_006860809.1|	-	0.042	13.2	2.1	0.3	10.4	0.4	2.4	2	1	0	2	2	2	0	Thymidylate	kinase
ATP-synt_ab	PF00006.20	gi|408402826|ref|YP_006860809.1|	-	0.091	12.2	0.2	0.15	11.5	0.2	1.4	1	1	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
AAA_25	PF13481.1	gi|408402826|ref|YP_006860809.1|	-	0.21	10.9	1.2	0.56	9.5	0.8	2.1	1	1	0	1	1	1	0	AAA	domain
SKI	PF01202.17	gi|408402826|ref|YP_006860809.1|	-	0.75	9.6	3.3	11	5.8	2.3	2.5	1	1	0	1	1	1	0	Shikimate	kinase
DUF106	PF01956.11	gi|408402827|ref|YP_006860810.1|	-	6.6e-14	51.7	9.3	8.4e-14	51.4	3.0	2.0	2	0	0	2	2	2	1	Integral	membrane	protein	DUF106
Iso_dh	PF00180.15	gi|408402827|ref|YP_006860810.1|	-	0.0044	16.0	1.8	0.0059	15.6	1.3	1.1	1	0	0	1	1	1	1	Isocitrate/isopropylmalate	dehydrogenase
RSN1_TM	PF13967.1	gi|408402827|ref|YP_006860810.1|	-	0.014	14.9	0.8	0.23	11.0	0.6	2.2	1	1	0	1	1	1	0	Late	exocytosis,	associated	with	Golgi	transport
TMPIT	PF07851.8	gi|408402827|ref|YP_006860810.1|	-	0.11	11.5	2.5	0.15	11.1	1.7	1.2	1	0	0	1	1	1	0	TMPIT-like	protein
DUF4259	PF14078.1	gi|408402827|ref|YP_006860810.1|	-	0.13	12.7	0.0	0.17	12.4	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4259)
OmpH	PF03938.9	gi|408402827|ref|YP_006860810.1|	-	0.17	11.8	4.1	0.25	11.2	2.8	1.2	1	0	0	1	1	1	0	Outer	membrane	protein	(OmpH-like)
PrgI	PF12666.2	gi|408402827|ref|YP_006860810.1|	-	0.27	11.4	5.2	0.32	11.1	0.2	2.6	3	0	0	3	3	3	0	PrgI	family	protein
60KD_IMP	PF02096.15	gi|408402827|ref|YP_006860810.1|	-	0.43	10.1	8.6	0.91	9.1	6.0	1.6	1	1	0	1	1	1	0	60Kd	inner	membrane	protein
DUF4446	PF14584.1	gi|408402827|ref|YP_006860810.1|	-	0.56	10.0	3.9	0.82	9.4	2.7	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4446)
Cytidylate_kin2	PF13189.1	gi|408402828|ref|YP_006860811.1|	-	9e-20	71.3	0.0	1.1e-19	70.9	0.0	1.1	1	0	0	1	1	1	1	Cytidylate	kinase-like	family
AAA_18	PF13238.1	gi|408402828|ref|YP_006860811.1|	-	8.1e-15	55.2	0.0	1.4e-14	54.5	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
AAA_17	PF13207.1	gi|408402828|ref|YP_006860811.1|	-	2.4e-10	41.2	0.2	3.6e-10	40.7	0.1	1.4	1	1	0	1	1	1	1	AAA	domain
KTI12	PF08433.5	gi|408402828|ref|YP_006860811.1|	-	0.0014	17.9	0.0	0.0026	16.9	0.0	1.5	1	1	0	1	1	1	1	Chromatin	associated	protein	KTI12
AAA_33	PF13671.1	gi|408402828|ref|YP_006860811.1|	-	0.0021	17.9	0.0	0.0065	16.3	0.0	1.7	1	1	0	2	2	2	1	AAA	domain
SKI	PF01202.17	gi|408402828|ref|YP_006860811.1|	-	0.0038	17.1	0.3	0.05	13.4	0.2	2.1	1	1	0	1	1	1	1	Shikimate	kinase
AAA_28	PF13521.1	gi|408402828|ref|YP_006860811.1|	-	0.005	16.8	0.0	0.018	15.0	0.0	1.8	1	1	1	2	2	2	1	AAA	domain
ADK	PF00406.17	gi|408402828|ref|YP_006860811.1|	-	0.0072	16.2	0.1	0.019	14.8	0.0	1.8	2	1	0	2	2	2	1	Adenylate	kinase
AAA_22	PF13401.1	gi|408402828|ref|YP_006860811.1|	-	0.0083	16.2	0.0	0.012	15.7	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA	PF00004.24	gi|408402828|ref|YP_006860811.1|	-	0.013	15.6	0.1	0.024	14.8	0.0	1.4	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
CoaE	PF01121.15	gi|408402828|ref|YP_006860811.1|	-	0.022	14.1	0.1	0.45	9.9	0.0	2.1	2	0	0	2	2	2	0	Dephospho-CoA	kinase
AAA_14	PF13173.1	gi|408402828|ref|YP_006860811.1|	-	0.032	14.1	0.0	0.068	13.0	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
6PF2K	PF01591.13	gi|408402828|ref|YP_006860811.1|	-	0.038	13.0	0.0	0.068	12.2	0.0	1.4	1	0	0	1	1	1	0	6-phosphofructo-2-kinase
Nif11	PF07862.6	gi|408402828|ref|YP_006860811.1|	-	0.051	13.5	3.2	1.2	9.0	0.2	2.9	3	0	0	3	3	3	0	Nitrogen	fixation	protein	of	unknown	function
NTPase_1	PF03266.10	gi|408402828|ref|YP_006860811.1|	-	0.084	12.5	0.0	0.14	11.8	0.0	1.4	1	0	0	1	1	1	0	NTPase
Cytidylate_kin	PF02224.13	gi|408402828|ref|YP_006860811.1|	-	0.1	12.0	0.1	0.18	11.2	0.0	1.5	2	0	0	2	2	2	0	Cytidylate	kinase
RNA_helicase	PF00910.17	gi|408402828|ref|YP_006860811.1|	-	0.15	12.2	0.0	0.28	11.3	0.0	1.5	1	0	0	1	1	1	0	RNA	helicase
TruB_N	PF01509.13	gi|408402829|ref|YP_006860812.1|	-	5.9e-24	84.9	0.4	3.2e-15	56.5	0.0	3.2	1	1	1	2	2	2	2	TruB	family	pseudouridylate	synthase	(N	terminal	domain)
PUA	PF01472.15	gi|408402829|ref|YP_006860812.1|	-	6.5e-16	57.8	0.7	1.1e-15	57.0	0.5	1.4	1	0	0	1	1	1	1	PUA	domain
DKCLD	PF08068.7	gi|408402829|ref|YP_006860812.1|	-	4e-15	55.4	0.1	8.2e-15	54.4	0.1	1.5	1	0	0	1	1	1	1	DKCLD	(NUC011)	domain
DZR	PF12773.2	gi|408402831|ref|YP_006860814.1|	-	8.7e-07	28.6	10.3	0.026	14.3	3.5	3.1	2	1	0	2	2	2	2	Double	zinc	ribbon
zinc-ribbons_6	PF07191.7	gi|408402831|ref|YP_006860814.1|	-	0.00017	21.2	10.4	0.0081	15.9	2.1	2.6	2	0	0	2	2	2	2	zinc-ribbons
DUF2296	PF10058.4	gi|408402831|ref|YP_006860814.1|	-	0.02	14.6	2.5	0.02	14.6	1.8	2.5	2	1	0	2	2	2	0	Predicted	integral	membrane	metal-binding	protein	(DUF2296)
DUF678	PF05077.7	gi|408402831|ref|YP_006860814.1|	-	0.069	13.1	9.9	1.4	8.9	1.0	2.9	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF678)
zf-ribbon_3	PF13248.1	gi|408402831|ref|YP_006860814.1|	-	0.12	11.6	13.0	4.1	6.7	0.3	3.7	3	0	0	3	3	3	0	zinc-ribbon	domain
zf-TFIIB	PF13453.1	gi|408402831|ref|YP_006860814.1|	-	0.13	11.4	10.6	0.93	8.7	0.8	3.8	4	0	0	4	4	4	0	Transcription	factor	zinc-finger
DNA_RNApol_7kD	PF03604.8	gi|408402831|ref|YP_006860814.1|	-	0.13	11.7	8.8	5.2	6.6	2.3	4.2	3	1	1	4	4	4	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
HypA	PF01155.14	gi|408402831|ref|YP_006860814.1|	-	0.13	11.9	10.4	4.2	7.1	0.3	3.9	2	1	1	4	4	4	0	Hydrogenase	expression/synthesis	hypA	family
Auto_anti-p27	PF06677.7	gi|408402831|ref|YP_006860814.1|	-	1.2	8.9	9.3	4.2	7.2	1.9	2.9	2	0	0	2	2	2	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
DUF2039	PF10217.4	gi|408402831|ref|YP_006860814.1|	-	2.1	8.4	12.9	0.069	13.1	1.6	3.0	2	1	1	3	3	3	0	Uncharacterized	conserved	protein	(DUF2039)
Prok-RING_1	PF14446.1	gi|408402831|ref|YP_006860814.1|	-	2.4	7.9	8.2	29	4.5	0.5	3.8	4	0	0	4	4	4	0	Prokaryotic	RING	finger	family	1
PHF5	PF03660.9	gi|408402831|ref|YP_006860814.1|	-	2.5	8.2	9.2	0.24	11.4	2.3	2.1	1	1	1	2	2	2	0	PHF5-like	protein
Glyco_tranf_2_3	PF13641.1	gi|408402832|ref|YP_006860815.1|	-	1.1e-34	120.2	0.0	1.5e-34	119.8	0.0	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glycos_transf_2	PF00535.21	gi|408402832|ref|YP_006860815.1|	-	9e-34	116.5	0.0	1.3e-33	116.0	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_trans_2_3	PF13632.1	gi|408402832|ref|YP_006860815.1|	-	2.8e-23	82.6	2.0	3.4e-23	82.3	0.4	1.9	2	0	0	2	2	2	1	Glycosyl	transferase	family	group	2
Chitin_synth_2	PF03142.10	gi|408402832|ref|YP_006860815.1|	-	3.8e-18	65.1	1.7	1.2e-12	47.0	0.0	3.3	2	1	1	3	3	3	3	Chitin	synthase
Glyco_transf_21	PF13506.1	gi|408402832|ref|YP_006860815.1|	-	3.9e-14	52.3	0.0	7.5e-14	51.3	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	family	21
Glyco_tranf_2_2	PF10111.4	gi|408402832|ref|YP_006860815.1|	-	2.2e-11	43.4	0.0	3.5e-11	42.7	0.0	1.3	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_4	PF13704.1	gi|408402832|ref|YP_006860815.1|	-	0.02	15.1	0.0	0.038	14.2	0.0	1.4	1	0	0	1	1	1	0	Glycosyl	transferase	family	2
Tetraspannin	PF00335.15	gi|408402832|ref|YP_006860815.1|	-	0.057	12.6	10.4	0.051	12.8	1.2	2.5	2	0	0	2	2	2	0	Tetraspanin	family
LysM	PF01476.15	gi|408402833|ref|YP_006860816.1|	-	1.1e-15	57.1	0.0	2.1e-15	56.3	0.0	1.5	1	0	0	1	1	1	1	LysM	domain
SLT	PF01464.15	gi|408402833|ref|YP_006860816.1|	-	2e-11	43.4	0.0	4.2e-11	42.3	0.0	1.6	1	0	0	1	1	1	1	Transglycosylase	SLT	domain
MFS_2	PF13347.1	gi|408402834|ref|YP_006860817.1|	-	5.3e-06	25.0	1.1	7.2e-06	24.6	0.7	1.1	1	0	0	1	1	1	1	MFS/sugar	transport	protein
MFS_1	PF07690.11	gi|408402834|ref|YP_006860817.1|	-	0.00023	20.0	4.3	0.00033	19.4	3.0	1.1	1	0	0	1	1	1	1	Major	Facilitator	Superfamily
ATG22	PF11700.3	gi|408402834|ref|YP_006860817.1|	-	0.012	14.1	1.4	0.015	13.7	0.9	1.1	1	0	0	1	1	1	0	Vacuole	effluxer	Atg22	like
Tetraspannin	PF00335.15	gi|408402834|ref|YP_006860817.1|	-	1.7	7.9	9.5	13	4.9	2.8	2.9	2	1	0	2	2	2	0	Tetraspanin	family
MFS_1	PF07690.11	gi|408402835|ref|YP_006860818.1|	-	0.39	9.3	7.0	0.43	9.2	4.9	1.0	1	0	0	1	1	1	0	Major	Facilitator	Superfamily
MFS_2	PF13347.1	gi|408402835|ref|YP_006860818.1|	-	0.56	8.5	4.3	0.58	8.5	3.0	1.0	1	0	0	1	1	1	0	MFS/sugar	transport	protein
VIT1	PF01988.14	gi|408402835|ref|YP_006860818.1|	-	1.2	8.5	3.9	1.3	8.4	2.7	1.0	1	0	0	1	1	1	0	VIT	family
HTH_AsnC-type	PF13404.1	gi|408402837|ref|YP_006860820.1|	-	0.00029	20.2	0.2	0.00046	19.6	0.2	1.3	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_24	PF13412.1	gi|408402837|ref|YP_006860820.1|	-	0.0013	18.0	0.7	0.0021	17.4	0.1	1.5	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
TM_helix	PF05552.7	gi|408402838|ref|YP_006860821.1|	-	3.2e-17	61.9	13.7	1.3e-09	37.5	0.1	3.8	4	0	0	4	4	4	2	Conserved	TM	helix
MS_channel	PF00924.13	gi|408402838|ref|YP_006860821.1|	-	2.9e-07	30.0	2.7	2.9e-07	30.0	1.9	1.8	1	1	0	1	1	1	1	Mechanosensitive	ion	channel
Colicin_V	PF02674.11	gi|408402838|ref|YP_006860821.1|	-	0.00054	19.8	20.8	0.0046	16.8	0.1	3.2	2	1	1	3	3	3	2	Colicin	V	production	protein
DUF46	PF01864.12	gi|408402838|ref|YP_006860821.1|	-	0.001	18.9	10.0	0.014	15.3	3.3	2.8	2	1	1	3	3	3	2	Putative	integral	membrane	protein	DUF46
DUF1427	PF07235.6	gi|408402838|ref|YP_006860821.1|	-	0.04	14.0	2.3	0.76	9.9	0.0	3.2	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF1427)
Esterase_phd	PF10503.4	gi|408402838|ref|YP_006860821.1|	-	0.088	12.0	1.5	5.4	6.1	0.1	2.2	1	1	1	2	2	2	0	Esterase	PHB	depolymerase
DUF3353	PF11833.3	gi|408402838|ref|YP_006860821.1|	-	0.48	9.8	12.4	0.21	11.0	0.5	2.4	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3353)
Tim17	PF02466.14	gi|408402838|ref|YP_006860821.1|	-	9.7	6.2	9.7	14	5.7	2.6	3.3	2	2	2	4	4	4	0	Tim17/Tim22/Tim23/Pmp24	family
OMP_b-brl_3	PF14905.1	gi|408402839|ref|YP_006860822.1|	-	1.3	7.6	17.0	0.22	10.1	8.6	1.7	1	1	1	2	2	2	0	Outer	membrane	protein	beta-barrel	family
DUF2382	PF09557.5	gi|408402841|ref|YP_006860824.1|	-	5e-24	84.3	23.7	7.8e-24	83.7	16.4	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF2382)
Glyoxalase_2	PF12681.2	gi|408402842|ref|YP_006860825.1|	-	4.1e-05	24.1	0.0	5.5e-05	23.7	0.0	1.2	1	0	0	1	1	1	1	Glyoxalase-like	domain
Glyoxalase	PF00903.20	gi|408402842|ref|YP_006860825.1|	-	9.6e-05	22.3	0.0	0.00012	22.0	0.0	1.4	1	1	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
ABM	PF03992.11	gi|408402843|ref|YP_006860826.1|	-	0.00018	21.4	0.0	0.00026	20.9	0.0	1.2	1	0	0	1	1	1	1	Antibiotic	biosynthesis	monooxygenase
TFIIB	PF00382.14	gi|408402844|ref|YP_006860827.1|	-	2.4e-30	104.1	0.5	6.9e-15	54.6	0.0	2.4	2	1	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.7	gi|408402844|ref|YP_006860827.1|	-	1.9e-05	23.8	0.0	3.4e-05	23.0	0.0	1.4	1	0	0	1	1	1	1	TFIIB	zinc-binding
HTH_AsnC-type	PF13404.1	gi|408402844|ref|YP_006860827.1|	-	0.0047	16.4	0.1	0.019	14.4	0.1	2.1	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
Sigma70_r4	PF04545.11	gi|408402844|ref|YP_006860827.1|	-	0.0068	15.6	0.1	0.04	13.2	0.0	2.2	2	0	0	2	2	2	1	Sigma-70,	region	4
HTH_11	PF08279.7	gi|408402844|ref|YP_006860827.1|	-	0.0075	15.8	2.5	0.031	13.9	0.1	2.6	2	0	0	2	2	2	1	HTH	domain
Sigma70_r4_2	PF08281.7	gi|408402844|ref|YP_006860827.1|	-	0.05	13.0	0.2	0.61	9.5	0.0	2.7	2	0	0	2	2	2	0	Sigma-70,	region	4
HTH_23	PF13384.1	gi|408402844|ref|YP_006860827.1|	-	0.12	12.0	0.7	2.6	7.8	0.0	2.7	2	1	0	2	2	2	0	Homeodomain-like	domain
Pirin	PF02678.11	gi|408402845|ref|YP_006860828.1|	-	4.9e-35	119.6	0.2	8e-35	118.9	0.1	1.4	1	0	0	1	1	1	1	Pirin
Pirin_C	PF05726.8	gi|408402845|ref|YP_006860828.1|	-	2.3e-32	111.1	0.0	7.1e-31	106.3	0.0	2.7	3	0	0	3	3	3	1	Pirin	C-terminal	cupin	domain
Cupin_2	PF07883.6	gi|408402845|ref|YP_006860828.1|	-	1.1e-06	28.0	0.9	0.0045	16.4	0.3	2.4	2	0	0	2	2	2	2	Cupin	domain
Radical_SAM	PF04055.16	gi|408402846|ref|YP_006860829.1|	-	1.4e-12	48.1	0.3	5.3e-12	46.2	0.2	1.8	2	0	0	2	2	2	1	Radical	SAM	superfamily
Fer4_14	PF13394.1	gi|408402846|ref|YP_006860829.1|	-	9.1e-08	32.1	0.2	1.9e-07	31.0	0.1	1.5	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_12	PF13353.1	gi|408402846|ref|YP_006860829.1|	-	3e-06	27.4	0.3	5.7e-06	26.5	0.2	1.4	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
AAA	PF00004.24	gi|408402847|ref|YP_006860830.1|	-	1.6e-96	319.5	0.0	1.2e-48	164.5	0.0	2.3	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
CDC48_N	PF02359.13	gi|408402847|ref|YP_006860830.1|	-	2.7e-25	88.1	0.5	1e-24	86.2	0.1	2.3	2	0	0	2	2	1	1	Cell	division	protein	48	(CDC48),	N-terminal	domain
AAA_2	PF07724.9	gi|408402847|ref|YP_006860830.1|	-	2.5e-15	56.7	0.0	1.9e-07	31.1	0.0	2.4	2	0	0	2	2	2	2	AAA	domain	(Cdc48	subfamily)
RuvB_N	PF05496.7	gi|408402847|ref|YP_006860830.1|	-	8.5e-15	54.4	0.0	1.3e-08	34.1	0.0	2.7	2	1	0	2	2	2	2	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_16	PF13191.1	gi|408402847|ref|YP_006860830.1|	-	6.9e-14	52.2	0.9	1.1e-05	25.5	0.0	3.4	2	2	1	3	3	3	2	AAA	ATPase	domain
AAA_22	PF13401.1	gi|408402847|ref|YP_006860830.1|	-	6.7e-13	48.9	0.3	8.9e-05	22.6	0.0	4.4	2	2	0	2	2	2	2	AAA	domain
AAA_5	PF07728.9	gi|408402847|ref|YP_006860830.1|	-	3.5e-11	42.9	0.4	3.1e-05	23.7	0.0	3.7	2	2	0	2	2	2	2	AAA	domain	(dynein-related	subfamily)
AAA_17	PF13207.1	gi|408402847|ref|YP_006860830.1|	-	9.5e-11	42.5	0.2	0.0004	21.1	0.0	2.9	3	0	0	3	3	2	2	AAA	domain
AAA_14	PF13173.1	gi|408402847|ref|YP_006860830.1|	-	1.1e-10	41.5	0.0	5.1e-05	23.1	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
TIP49	PF06068.8	gi|408402847|ref|YP_006860830.1|	-	1.2e-10	40.6	0.1	0.00023	20.0	0.0	2.3	2	0	0	2	2	2	2	TIP49	C-terminus
AAA_33	PF13671.1	gi|408402847|ref|YP_006860830.1|	-	5.1e-10	39.3	0.0	0.00018	21.3	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
Zeta_toxin	PF06414.7	gi|408402847|ref|YP_006860830.1|	-	2.5e-09	36.5	0.0	0.00012	21.2	0.0	2.4	2	0	0	2	2	2	2	Zeta	toxin
IstB_IS21	PF01695.12	gi|408402847|ref|YP_006860830.1|	-	5.9e-09	35.5	0.1	0.0024	17.2	0.0	2.4	2	0	0	2	2	2	2	IstB-like	ATP	binding	protein
CDC48_2	PF02933.12	gi|408402847|ref|YP_006860830.1|	-	1.2e-08	34.4	0.0	2.8e-08	33.2	0.0	1.6	1	0	0	1	1	1	1	Cell	division	protein	48	(CDC48),	domain	2
Sigma54_activat	PF00158.21	gi|408402847|ref|YP_006860830.1|	-	4.5e-08	32.7	0.7	0.02	14.4	0.0	3.9	2	2	0	2	2	2	2	Sigma-54	interaction	domain
AAA_19	PF13245.1	gi|408402847|ref|YP_006860830.1|	-	2.3e-07	30.4	2.2	0.0089	15.7	0.1	3.1	3	0	0	3	3	2	2	Part	of	AAA	domain
AAA_28	PF13521.1	gi|408402847|ref|YP_006860830.1|	-	5.4e-07	29.7	0.2	0.0063	16.4	0.0	2.8	3	0	0	3	3	2	2	AAA	domain
AAA_18	PF13238.1	gi|408402847|ref|YP_006860830.1|	-	7.2e-07	29.5	0.0	0.018	15.3	0.0	2.6	2	0	0	2	2	2	2	AAA	domain
PhoH	PF02562.11	gi|408402847|ref|YP_006860830.1|	-	3.8e-06	26.2	0.7	0.088	12.0	0.1	2.5	2	0	0	2	2	2	2	PhoH-like	protein
RNA_helicase	PF00910.17	gi|408402847|ref|YP_006860830.1|	-	4.1e-06	26.9	0.0	0.097	12.8	0.0	2.5	2	0	0	2	2	2	2	RNA	helicase
Mg_chelatase	PF01078.16	gi|408402847|ref|YP_006860830.1|	-	5e-06	25.8	0.9	0.032	13.3	0.0	2.7	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
KaiC	PF06745.8	gi|408402847|ref|YP_006860830.1|	-	7.1e-06	25.3	1.5	0.16	11.0	0.0	3.3	2	1	1	3	3	3	2	KaiC
Sigma54_activ_2	PF14532.1	gi|408402847|ref|YP_006860830.1|	-	1.7e-05	24.8	0.0	0.14	12.2	0.0	2.6	2	0	0	2	2	2	2	Sigma-54	interaction	domain
ABC_tran	PF00005.22	gi|408402847|ref|YP_006860830.1|	-	2.9e-05	24.3	0.0	0.41	10.9	0.0	2.5	2	0	0	2	2	2	2	ABC	transporter
Arch_ATPase	PF01637.13	gi|408402847|ref|YP_006860830.1|	-	4.7e-05	23.1	0.0	0.026	14.2	0.0	3.3	2	2	2	4	4	4	1	Archaeal	ATPase
AAA_25	PF13481.1	gi|408402847|ref|YP_006860830.1|	-	4.7e-05	22.8	6.3	0.82	9.0	0.2	4.0	2	2	2	4	4	4	2	AAA	domain
NACHT	PF05729.7	gi|408402847|ref|YP_006860830.1|	-	8e-05	22.3	0.2	0.54	9.8	0.0	3.4	4	0	0	4	4	3	2	NACHT	domain
ATP-synt_ab	PF00006.20	gi|408402847|ref|YP_006860830.1|	-	0.00028	20.4	0.0	0.65	9.4	0.0	2.5	2	1	0	2	2	2	2	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
Bac_DnaA	PF00308.13	gi|408402847|ref|YP_006860830.1|	-	0.00034	20.3	0.0	0.72	9.4	0.0	2.8	3	0	0	3	3	2	2	Bacterial	dnaA	protein
DUF815	PF05673.8	gi|408402847|ref|YP_006860830.1|	-	0.0004	19.3	0.0	0.41	9.5	0.0	2.4	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF815)
AAA_24	PF13479.1	gi|408402847|ref|YP_006860830.1|	-	0.00048	19.7	0.8	0.22	11.0	0.0	2.4	2	0	0	2	2	2	1	AAA	domain
NB-ARC	PF00931.17	gi|408402847|ref|YP_006860830.1|	-	0.00084	18.2	0.1	0.83	8.4	0.0	2.3	2	0	0	2	2	2	2	NB-ARC	domain
UPF0079	PF02367.12	gi|408402847|ref|YP_006860830.1|	-	0.0011	18.6	0.1	1.2	8.8	0.0	2.4	2	0	0	2	2	2	1	Uncharacterised	P-loop	hydrolase	UPF0079
T2SE	PF00437.15	gi|408402847|ref|YP_006860830.1|	-	0.0011	17.9	0.0	1.4	7.7	0.0	2.4	2	0	0	2	2	2	2	Type	II/IV	secretion	system	protein
AAA_3	PF07726.6	gi|408402847|ref|YP_006860830.1|	-	0.0012	18.4	0.0	0.64	9.6	0.0	2.6	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF2075	PF09848.4	gi|408402847|ref|YP_006860830.1|	-	0.0019	17.2	0.0	1.7	7.5	0.0	2.5	2	0	0	2	2	2	2	Uncharacterized	conserved	protein	(DUF2075)
ResIII	PF04851.10	gi|408402847|ref|YP_006860830.1|	-	0.0023	17.7	0.0	0.68	9.7	0.0	2.4	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
NTPase_1	PF03266.10	gi|408402847|ref|YP_006860830.1|	-	0.0035	17.0	3.6	5.4	6.6	0.0	3.8	2	2	2	4	4	4	0	NTPase
AAA_30	PF13604.1	gi|408402847|ref|YP_006860830.1|	-	0.005	16.4	0.2	2.5	7.6	0.0	2.5	2	0	0	2	2	2	1	AAA	domain
SKI	PF01202.17	gi|408402847|ref|YP_006860830.1|	-	0.009	15.8	0.1	2.6	7.9	0.0	2.6	2	0	0	2	2	2	1	Shikimate	kinase
Parvo_NS1	PF01057.12	gi|408402847|ref|YP_006860830.1|	-	0.01	14.7	0.0	1.7	7.4	0.0	2.2	2	0	0	2	2	2	0	Parvovirus	non-structural	protein	NS1
Guanylate_kin	PF00625.16	gi|408402847|ref|YP_006860830.1|	-	0.013	14.9	2.0	11	5.3	0.0	4.2	4	1	1	5	5	4	0	Guanylate	kinase
AAA_29	PF13555.1	gi|408402847|ref|YP_006860830.1|	-	0.025	14.0	0.9	4.4	6.9	0.1	2.5	2	0	0	2	2	2	0	P-loop	containing	region	of	AAA	domain
CPT	PF07931.7	gi|408402847|ref|YP_006860830.1|	-	0.025	14.1	0.0	1.8	8.1	0.0	2.5	2	0	0	2	2	2	0	Chloramphenicol	phosphotransferase-like	protein
AAA_11	PF13086.1	gi|408402847|ref|YP_006860830.1|	-	0.028	14.0	0.0	1.1	8.8	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
AFG1_ATPase	PF03969.11	gi|408402847|ref|YP_006860830.1|	-	0.045	12.5	0.0	5.1	5.7	0.0	2.3	2	0	0	2	2	2	0	AFG1-like	ATPase
PduV-EutP	PF10662.4	gi|408402847|ref|YP_006860830.1|	-	0.046	13.1	0.0	10	5.6	0.0	2.5	2	0	0	2	2	2	0	Ethanolamine	utilisation	-	propanediol	utilisation
KAP_NTPase	PF07693.9	gi|408402847|ref|YP_006860830.1|	-	0.09	11.7	0.1	1.8	7.4	0.0	2.6	2	1	1	3	3	3	0	KAP	family	P-loop	domain
DUF258	PF03193.11	gi|408402847|ref|YP_006860830.1|	-	0.1	11.8	0.0	8.7	5.5	0.0	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function,	DUF258
SRPRB	PF09439.5	gi|408402847|ref|YP_006860830.1|	-	0.11	11.7	0.1	17	4.5	0.0	2.5	2	1	0	2	2	2	0	Signal	recognition	particle	receptor	beta	subunit
Torsin	PF06309.6	gi|408402847|ref|YP_006860830.1|	-	0.37	10.6	0.6	8.2	6.3	0.0	2.7	3	0	0	3	3	2	0	Torsin
AAA_10	PF12846.2	gi|408402847|ref|YP_006860830.1|	-	2	7.7	5.0	17	4.7	0.0	3.4	2	2	1	3	3	3	0	AAA-like	domain
Usp	PF00582.21	gi|408402849|ref|YP_006860832.1|	-	8.4e-27	94.0	0.1	1.2e-26	93.5	0.1	1.2	1	0	0	1	1	1	1	Universal	stress	protein	family
SRP54	PF00448.17	gi|408402849|ref|YP_006860832.1|	-	0.04	13.3	0.0	0.066	12.6	0.0	1.4	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
z-alpha	PF02295.12	gi|408402852|ref|YP_006860835.1|	-	6.1e-05	22.7	0.0	6.4e-05	22.6	0.0	1.0	1	0	0	1	1	1	1	Adenosine	deaminase	z-alpha	domain
LexA_DNA_bind	PF01726.11	gi|408402852|ref|YP_006860835.1|	-	0.0069	15.9	0.0	0.0096	15.4	0.0	1.3	1	1	0	1	1	1	1	LexA	DNA	binding	domain
DUF2753	PF10952.3	gi|408402852|ref|YP_006860835.1|	-	0.11	12.4	0.0	0.13	12.2	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2753)
TFIIB	PF00382.14	gi|408402853|ref|YP_006860836.1|	-	7e-30	102.6	4.2	5.9e-16	58.0	0.4	2.2	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.7	gi|408402853|ref|YP_006860836.1|	-	3.1e-08	32.7	0.1	5e-08	32.1	0.1	1.4	1	0	0	1	1	1	1	TFIIB	zinc-binding
Sigma70_r4	PF04545.11	gi|408402853|ref|YP_006860836.1|	-	3.4e-06	26.2	0.0	0.0011	18.2	0.0	2.4	2	0	0	2	2	2	1	Sigma-70,	region	4
HTH_3	PF01381.17	gi|408402853|ref|YP_006860836.1|	-	4.8e-05	23.1	0.1	0.41	10.5	0.0	3.3	3	0	0	3	3	3	2	Helix-turn-helix
HTH_11	PF08279.7	gi|408402853|ref|YP_006860836.1|	-	0.00042	19.9	0.1	0.0017	17.9	0.0	2.1	2	0	0	2	2	2	1	HTH	domain
HTH_AsnC-type	PF13404.1	gi|408402853|ref|YP_006860836.1|	-	0.01	15.3	0.1	0.35	10.4	0.0	3.0	3	0	0	3	3	3	1	AsnC-type	helix-turn-helix	domain
GerE	PF00196.14	gi|408402853|ref|YP_006860836.1|	-	0.019	14.2	1.6	0.039	13.2	0.0	2.3	3	0	0	3	3	3	0	Bacterial	regulatory	proteins,	luxR	family
HTH_23	PF13384.1	gi|408402853|ref|YP_006860836.1|	-	0.031	13.9	0.2	0.88	9.3	0.0	2.6	2	0	0	2	2	2	0	Homeodomain-like	domain
HTH_Tnp_ISL3	PF13542.1	gi|408402853|ref|YP_006860836.1|	-	0.034	13.3	0.1	0.53	9.5	0.0	2.6	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_Crp_2	PF13545.1	gi|408402853|ref|YP_006860836.1|	-	0.045	13.5	0.0	0.5	10.1	0.0	2.3	2	0	0	2	2	2	0	Crp-like	helix-turn-helix	domain
HTH_24	PF13412.1	gi|408402853|ref|YP_006860836.1|	-	0.056	12.8	0.1	0.56	9.6	0.0	2.5	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
Sigma70_r4_2	PF08281.7	gi|408402853|ref|YP_006860836.1|	-	0.063	12.7	0.1	0.27	10.7	0.0	2.1	2	0	0	2	2	2	0	Sigma-70,	region	4
TetR_N	PF00440.18	gi|408402853|ref|YP_006860836.1|	-	0.069	12.8	0.4	6.1	6.5	0.0	2.8	3	0	0	3	3	3	0	Bacterial	regulatory	proteins,	tetR	family
LacI	PF00356.16	gi|408402853|ref|YP_006860836.1|	-	0.081	12.5	0.5	4.8	6.8	0.0	2.7	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	lacI	family
Phage_terminase	PF10668.4	gi|408402853|ref|YP_006860836.1|	-	0.12	12.1	0.5	8.2	6.2	0.0	2.7	3	0	0	3	3	3	0	Phage	terminase	small	subunit
Fanconi_A	PF03511.9	gi|408402855|ref|YP_006860838.1|	-	0.13	12.0	0.3	0.25	11.1	0.1	1.6	1	1	0	1	1	1	0	Fanconi	anaemia	group	A	protein
RecR	PF02132.10	gi|408402856|ref|YP_006860839.1|	-	0.019	14.3	2.6	0.04	13.3	0.3	2.0	2	0	0	2	2	2	0	RecR	protein
DZR	PF12773.2	gi|408402856|ref|YP_006860839.1|	-	0.26	11.1	3.3	0.47	10.3	2.3	1.5	1	1	0	1	1	1	0	Double	zinc	ribbon
Cript	PF10235.4	gi|408402856|ref|YP_006860839.1|	-	0.39	11.0	6.3	2.3	8.6	0.4	2.1	1	1	1	2	2	2	0	Microtubule-associated	protein	CRIPT
Zn_ribbon_2	PF12674.2	gi|408402856|ref|YP_006860839.1|	-	2	8.8	5.0	4.2	7.7	3.5	1.5	1	1	1	2	2	2	0	Putative	zinc	ribbon	domain
AsnC_trans_reg	PF01037.16	gi|408402857|ref|YP_006860840.1|	-	4.4e-06	26.3	0.0	6.3e-06	25.8	0.0	1.2	1	0	0	1	1	1	1	AsnC	family
Med4	PF10018.4	gi|408402857|ref|YP_006860840.1|	-	0.15	11.4	0.1	0.18	11.1	0.0	1.1	1	0	0	1	1	1	0	Vitamin-D-receptor	interacting	Mediator	subunit	4
DUF3785	PF12653.2	gi|408402859|ref|YP_006860842.1|	-	0.0055	16.5	0.0	0.0065	16.3	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3785)
Cys_rich_KTR	PF14205.1	gi|408402859|ref|YP_006860842.1|	-	0.0069	15.8	0.4	0.048	13.1	0.1	2.0	2	0	0	2	2	2	1	Cysteine-rich	KTR
zf-C4_Topoisom	PF01396.14	gi|408402859|ref|YP_006860842.1|	-	0.043	13.3	0.2	0.086	12.3	0.2	1.5	1	0	0	1	1	1	0	Topoisomerase	DNA	binding	C4	zinc	finger
Zn-ribbon_8	PF09723.5	gi|408402859|ref|YP_006860842.1|	-	0.15	12.0	0.6	0.25	11.3	0.2	1.6	1	1	0	1	1	1	0	Zinc	ribbon	domain
DUF3797	PF12677.2	gi|408402859|ref|YP_006860842.1|	-	0.15	11.7	0.3	0.34	10.5	0.0	1.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3797)
zf-RING_3	PF14369.1	gi|408402859|ref|YP_006860842.1|	-	0.16	11.9	0.8	0.27	11.2	0.6	1.6	1	1	0	1	1	1	0	zinc-finger
DUF1319	PF07028.6	gi|408402861|ref|YP_006860844.1|	-	0.0098	16.0	0.6	0.01	16.0	0.4	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1319)
Cep57_MT_bd	PF06657.8	gi|408402861|ref|YP_006860844.1|	-	0.017	15.0	1.0	0.024	14.5	0.2	1.6	1	1	0	1	1	1	0	Centrosome	microtubule-binding	domain	of	Cep57
EzrA	PF06160.7	gi|408402861|ref|YP_006860844.1|	-	0.017	13.3	0.5	0.019	13.1	0.4	1.0	1	0	0	1	1	1	0	Septation	ring	formation	regulator,	EzrA
Snapin_Pallidin	PF14712.1	gi|408402861|ref|YP_006860844.1|	-	0.018	15.3	0.6	0.031	14.5	0.4	1.4	1	1	0	1	1	1	0	Snapin/Pallidin
Myosin_tail_1	PF01576.14	gi|408402861|ref|YP_006860844.1|	-	0.019	12.7	1.2	0.019	12.6	0.9	1.0	1	0	0	1	1	1	0	Myosin	tail
TBPIP	PF07106.8	gi|408402861|ref|YP_006860844.1|	-	0.029	13.9	0.7	0.032	13.7	0.5	1.1	1	0	0	1	1	1	0	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
ADIP	PF11559.3	gi|408402861|ref|YP_006860844.1|	-	0.043	13.7	0.9	0.045	13.6	0.6	1.1	1	0	0	1	1	1	0	Afadin-	and	alpha	-actinin-Binding
PspB	PF06667.7	gi|408402861|ref|YP_006860844.1|	-	0.059	13.3	0.2	0.079	12.9	0.1	1.4	1	1	0	1	1	1	0	Phage	shock	protein	B
Prefoldin	PF02996.12	gi|408402861|ref|YP_006860844.1|	-	0.068	12.8	0.7	0.11	12.1	0.5	1.3	1	0	0	1	1	1	0	Prefoldin	subunit
bZIP_1	PF00170.16	gi|408402861|ref|YP_006860844.1|	-	0.11	12.5	3.5	0.15	12.0	2.0	1.6	1	1	0	1	1	1	0	bZIP	transcription	factor
DUF4140	PF13600.1	gi|408402861|ref|YP_006860844.1|	-	0.12	12.7	0.2	0.13	12.7	0.1	1.2	1	0	0	1	1	1	0	N-terminal	domain	of	unknown	function	(DUF4140)
Nup54	PF13874.1	gi|408402861|ref|YP_006860844.1|	-	0.13	11.9	0.7	0.15	11.7	0.5	1.3	1	1	0	1	1	1	0	Nucleoporin	complex	subunit	54
DnaJ_CXXCXGXG	PF00684.14	gi|408402862|ref|YP_006860845.1|	-	0.0039	17.2	1.0	0.0065	16.4	0.7	1.3	1	0	0	1	1	1	1	DnaJ	central	domain
Ribosomal_S14	PF00253.16	gi|408402863|ref|YP_006860846.1|	-	0.013	14.8	0.1	0.013	14.8	0.1	1.2	1	0	0	1	1	1	0	Ribosomal	protein	S14p/S29e
PyrI_C	PF02748.10	gi|408402863|ref|YP_006860846.1|	-	0.014	14.8	0.3	0.019	14.3	0.2	1.2	1	0	0	1	1	1	0	Aspartate	carbamoyltransferase	regulatory	chain,	metal	binding	domain
zinc_ribbon_6	PF14599.1	gi|408402863|ref|YP_006860846.1|	-	0.015	15.0	0.2	0.018	14.7	0.1	1.2	1	0	0	1	1	1	0	Zinc-ribbon
Zn-ribbon_8	PF09723.5	gi|408402863|ref|YP_006860846.1|	-	0.094	12.6	0.1	0.16	11.9	0.1	1.3	1	0	0	1	1	1	0	Zinc	ribbon	domain
Zn_Tnp_IS1595	PF12760.2	gi|408402863|ref|YP_006860846.1|	-	0.12	12.2	0.1	0.15	11.8	0.1	1.2	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
YyzF	PF14116.1	gi|408402864|ref|YP_006860847.1|	-	0.12	12.3	0.2	0.6	10.0	0.1	1.9	2	0	0	2	2	2	0	YyzF-like	protein
Zn_ribbon_2	PF12674.2	gi|408402864|ref|YP_006860847.1|	-	0.21	11.9	1.5	15	6.0	0.0	2.0	1	1	1	2	2	2	0	Putative	zinc	ribbon	domain
AsnC_trans_reg	PF01037.16	gi|408402865|ref|YP_006860848.1|	-	4.8e-07	29.3	0.2	5.6e-07	29.1	0.1	1.1	1	0	0	1	1	1	1	AsnC	family
zf-ZPR1	PF03367.8	gi|408402865|ref|YP_006860848.1|	-	0.099	11.7	0.1	0.12	11.5	0.0	1.1	1	0	0	1	1	1	0	ZPR1	zinc-finger	domain
AsnC_trans_reg	PF01037.16	gi|408402866|ref|YP_006860849.1|	-	1.4e-07	31.0	0.0	1.5e-07	31.0	0.0	1.1	1	0	0	1	1	1	1	AsnC	family
CbtA	PF09490.5	gi|408402867|ref|YP_006860850.1|	-	1.5e-05	24.3	15.1	0.00026	20.3	10.5	2.1	1	1	0	1	1	1	1	Probable	cobalt	transporter	subunit	(CbtA)
Acyl_transf_3	PF01757.17	gi|408402867|ref|YP_006860850.1|	-	0.34	9.6	8.6	0.49	9.1	5.9	1.3	1	0	0	1	1	1	0	Acyltransferase	family
DUF4149	PF13664.1	gi|408402867|ref|YP_006860850.1|	-	8.4	6.5	12.7	4	7.5	4.1	3.3	3	1	0	3	3	3	0	Domain	of	unknown	function	(DUF4149)
GvpG	PF05120.7	gi|408402868|ref|YP_006860851.1|	-	0.082	12.7	0.3	0.12	12.2	0.2	1.2	1	0	0	1	1	1	0	Gas	vesicle	protein	G
OrfB_IS605	PF01385.14	gi|408402869|ref|YP_006860852.1|	-	3.5e-09	36.3	0.9	5.5e-09	35.7	0.6	1.3	1	0	0	1	1	1	1	Probable	transposase
HTH_OrfB_IS605	PF12323.3	gi|408402869|ref|YP_006860852.1|	-	0.00014	21.0	0.5	0.00025	20.3	0.1	1.7	2	0	0	2	2	2	1	Helix-turn-helix	domain
DUF3760	PF12586.3	gi|408402869|ref|YP_006860852.1|	-	0.088	12.6	0.0	0.41	10.5	0.0	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3760)
CARD	PF00619.16	gi|408402871|ref|YP_006860854.1|	-	0.064	13.0	0.1	0.11	12.3	0.1	1.5	1	0	0	1	1	1	0	Caspase	recruitment	domain
YcaO	PF02624.11	gi|408402872|ref|YP_006860855.1|	-	1.8e-75	254.5	0.0	2e-74	251.0	0.0	2.2	2	1	0	2	2	2	1	YcaO-like	family
TfuA	PF07812.7	gi|408402873|ref|YP_006860856.1|	-	3.9e-32	110.1	0.0	5.3e-32	109.7	0.0	1.2	1	0	0	1	1	1	1	TfuA-like	protein
Response_reg	PF00072.19	gi|408402874|ref|YP_006860857.1|	-	1.2e-22	80.0	0.0	1.3e-22	79.8	0.0	1.0	1	0	0	1	1	1	1	Response	regulator	receiver	domain
Cob_adeno_trans	PF01923.13	gi|408402875|ref|YP_006860858.1|	-	9.2e-55	184.8	0.0	1e-54	184.6	0.0	1.0	1	0	0	1	1	1	1	Cobalamin	adenosyltransferase
zf-C2H2_4	PF13894.1	gi|408402876|ref|YP_006860859.1|	-	1e-05	25.4	0.4	1.3e-05	25.1	0.3	1.2	1	0	0	1	1	1	1	C2H2-type	zinc	finger
zf-Di19	PF05605.7	gi|408402876|ref|YP_006860859.1|	-	0.00021	21.3	0.1	0.00026	21.0	0.1	1.1	1	0	0	1	1	1	1	Drought	induced	19	protein	(Di19),	zinc-binding
zf-C2H2	PF00096.21	gi|408402876|ref|YP_006860859.1|	-	0.00034	20.7	0.7	0.00045	20.4	0.5	1.2	1	0	0	1	1	1	1	Zinc	finger,	C2H2	type
zf-C2H2_2	PF12756.2	gi|408402876|ref|YP_006860859.1|	-	0.0028	17.7	0.1	0.0028	17.7	0.0	1.1	1	0	0	1	1	1	1	C2H2	type	zinc-finger	(2	copies)
zf-H2C2_2	PF13465.1	gi|408402876|ref|YP_006860859.1|	-	0.037	14.3	3.1	1.7	9.0	0.2	2.1	2	0	0	2	2	2	0	Zinc-finger	double	domain
zf-CHCC	PF10276.4	gi|408402876|ref|YP_006860859.1|	-	0.093	12.5	0.2	0.13	12.1	0.2	1.2	1	0	0	1	1	1	0	Zinc-finger	domain
zf-C2H2_jaz	PF12171.3	gi|408402876|ref|YP_006860859.1|	-	0.093	12.8	0.2	0.16	12.1	0.1	1.4	1	0	0	1	1	1	0	Zinc-finger	double-stranded	RNA-binding
HNH	PF01844.18	gi|408402876|ref|YP_006860859.1|	-	0.1	12.4	0.3	0.17	11.8	0.2	1.4	1	0	0	1	1	1	0	HNH	endonuclease
DUF4187	PF13821.1	gi|408402876|ref|YP_006860859.1|	-	0.14	11.7	0.2	0.21	11.2	0.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4187)
HD_3	PF13023.1	gi|408402877|ref|YP_006860860.1|	-	2e-38	131.7	0.2	2.4e-38	131.4	0.1	1.1	1	0	0	1	1	1	1	HD	domain
HD	PF01966.17	gi|408402877|ref|YP_006860860.1|	-	3.7e-05	23.7	0.2	6.7e-05	22.8	0.2	1.4	1	1	0	1	1	1	1	HD	domain
FMN_red	PF03358.10	gi|408402879|ref|YP_006860862.1|	-	7.6e-36	122.9	0.0	9.6e-36	122.5	0.0	1.1	1	0	0	1	1	1	1	NADPH-dependent	FMN	reductase
Flavodoxin_2	PF02525.12	gi|408402879|ref|YP_006860862.1|	-	4.4e-06	26.3	0.0	8.6e-06	25.3	0.0	1.4	1	1	0	1	1	1	1	Flavodoxin-like	fold
DUF3836	PF12930.2	gi|408402879|ref|YP_006860862.1|	-	0.055	12.9	0.0	0.099	12.1	0.0	1.3	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF3836)
DDE_Tnp_1	PF01609.16	gi|408402880|ref|YP_006860863.1|	-	0.0042	16.6	0.2	0.0078	15.7	0.1	1.5	1	1	0	1	1	1	1	Transposase	DDE	domain
DUF1815	PF08844.5	gi|408402880|ref|YP_006860863.1|	-	0.018	14.6	0.2	0.049	13.2	0.0	1.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1815)
GSDH	PF07995.6	gi|408402882|ref|YP_006860865.1|	-	0.032	13.3	0.0	0.032	13.3	0.0	1.0	1	0	0	1	1	1	0	Glucose	/	Sorbosone	dehydrogenase
GSDH	PF07995.6	gi|408402883|ref|YP_006860866.1|	-	7.1e-11	41.7	0.0	1e-10	41.2	0.0	1.2	1	0	0	1	1	1	1	Glucose	/	Sorbosone	dehydrogenase
GSDH	PF07995.6	gi|408402884|ref|YP_006860867.1|	-	6.4e-08	32.0	0.0	7.5e-08	31.8	0.0	1.0	1	0	0	1	1	1	1	Glucose	/	Sorbosone	dehydrogenase
AraC_binding	PF02311.14	gi|408402884|ref|YP_006860867.1|	-	0.13	11.9	0.0	0.18	11.4	0.0	1.2	1	0	0	1	1	1	0	AraC-like	ligand	binding	domain
Saccharop_dh_N	PF04455.7	gi|408402885|ref|YP_006860868.1|	-	1.1e-38	131.4	0.0	3.1e-38	130.0	0.0	1.8	2	0	0	2	2	2	1	LOR/SDH	bifunctional	enzyme	conserved	region
Band_7	PF01145.20	gi|408402886|ref|YP_006860869.1|	-	0.0025	17.7	0.1	0.0032	17.4	0.1	1.2	1	0	0	1	1	1	1	SPFH	domain	/	Band	7	family
NfeD	PF01957.13	gi|408402886|ref|YP_006860869.1|	-	0.036	14.2	2.2	0.041	14.0	1.5	1.1	1	0	0	1	1	1	0	NfeD-like	C-terminal,	partner-binding
DUF3040	PF11239.3	gi|408402886|ref|YP_006860869.1|	-	0.089	12.8	1.9	0.13	12.3	1.3	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3040)
GPI2	PF06432.6	gi|408402886|ref|YP_006860869.1|	-	0.15	11.3	0.5	0.17	11.1	0.3	1.0	1	0	0	1	1	1	0	Phosphatidylinositol	N-acetylglucosaminyltransferase
SdpI	PF13630.1	gi|408402886|ref|YP_006860869.1|	-	0.25	11.0	4.9	0.36	10.5	3.4	1.3	1	0	0	1	1	1	0	SdpI/YhfL	protein	family
Band_7	PF01145.20	gi|408402887|ref|YP_006860870.1|	-	1.8e-12	47.5	0.6	2.1e-12	47.2	0.4	1.0	1	0	0	1	1	1	1	SPFH	domain	/	Band	7	family
Tyr_Deacylase	PF02580.11	gi|408402887|ref|YP_006860870.1|	-	0.0041	17.1	0.0	0.0045	16.9	0.0	1.2	1	0	0	1	1	1	1	D-Tyr-tRNA(Tyr)	deacylase
GatB_Yqey	PF02637.13	gi|408402887|ref|YP_006860870.1|	-	0.022	14.4	0.1	0.024	14.3	0.1	1.2	1	0	0	1	1	1	0	GatB	domain
OmpH	PF03938.9	gi|408402888|ref|YP_006860871.1|	-	0.11	12.4	3.2	0.17	11.7	2.2	1.3	1	0	0	1	1	1	0	Outer	membrane	protein	(OmpH-like)
SelR	PF01641.13	gi|408402889|ref|YP_006860872.1|	-	2.3e-06	27.3	0.0	2.4e-06	27.2	0.0	1.0	1	0	0	1	1	1	1	SelR	domain
zf-C2HC5	PF06221.8	gi|408402889|ref|YP_006860872.1|	-	0.11	12.2	0.1	0.14	11.8	0.1	1.1	1	0	0	1	1	1	0	Putative	zinc	finger	motif,	C2HC5-type
SelR	PF01641.13	gi|408402890|ref|YP_006860873.1|	-	8e-13	48.1	0.0	8.7e-13	48.0	0.0	1.0	1	0	0	1	1	1	1	SelR	domain
GatB_N	PF02934.10	gi|408402892|ref|YP_006860875.1|	-	2.8e-100	334.8	0.0	4.1e-100	334.3	0.0	1.2	1	0	0	1	1	1	1	GatB/GatE	catalytic	domain
GatB_Yqey	PF02637.13	gi|408402892|ref|YP_006860875.1|	-	5.9e-33	113.6	2.0	8.6e-33	113.1	1.4	1.3	1	0	0	1	1	1	1	GatB	domain
Aldolase_2	PF10120.4	gi|408402892|ref|YP_006860875.1|	-	0.053	12.9	0.1	0.23	10.8	0.0	2.0	1	1	0	2	2	2	0	Putative	aldolase
Amidase	PF01425.16	gi|408402893|ref|YP_006860876.1|	-	1.7e-146	488.5	0.3	2e-146	488.3	0.2	1.0	1	0	0	1	1	1	1	Amidase
Glu-tRNAGln	PF02686.10	gi|408402894|ref|YP_006860877.1|	-	8.1e-09	35.1	0.2	1.2e-08	34.6	0.1	1.3	1	0	0	1	1	1	1	Glu-tRNAGln	amidotransferase	C	subunit
tRNA-synt_2	PF00152.15	gi|408402895|ref|YP_006860878.1|	-	2.4e-85	286.2	0.1	3.3e-85	285.8	0.0	1.2	1	0	0	1	1	1	1	tRNA	synthetases	class	II	(D,	K	and	N)
tRNA_anti-codon	PF01336.20	gi|408402895|ref|YP_006860878.1|	-	1.7e-13	50.1	0.0	2.8e-13	49.5	0.0	1.3	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
tRNA-synt_2d	PF01409.15	gi|408402895|ref|YP_006860878.1|	-	0.00056	19.1	0.5	0.007	15.5	0.0	2.4	3	0	0	3	3	3	1	tRNA	synthetases	class	II	core	domain	(F)
Response_reg	PF00072.19	gi|408402896|ref|YP_006860879.1|	-	2.5e-19	69.3	0.0	2.9e-19	69.1	0.0	1.0	1	0	0	1	1	1	1	Response	regulator	receiver	domain
OKR_DC_1_N	PF03709.10	gi|408402896|ref|YP_006860879.1|	-	0.091	12.8	0.0	0.12	12.4	0.0	1.2	1	0	0	1	1	1	0	Orn/Lys/Arg	decarboxylase,	N-terminal	domain
DUF2205	PF10224.4	gi|408402897|ref|YP_006860880.1|	-	0.015	14.8	0.2	0.035	13.6	0.1	1.6	1	0	0	1	1	1	0	Predicted	coiled-coil	protein	(DUF2205)
DHHA1	PF02272.14	gi|408402897|ref|YP_006860880.1|	-	0.028	14.0	0.1	0.065	12.9	0.1	1.7	1	0	0	1	1	1	0	DHHA1	domain
tRNA_SAD	PF07973.9	gi|408402897|ref|YP_006860880.1|	-	0.041	13.7	0.0	0.13	12.1	0.0	1.9	2	0	0	2	2	2	0	Threonyl	and	Alanyl	tRNA	synthetase	second	additional	domain
DUF1297	PF06973.7	gi|408402898|ref|YP_006860881.1|	-	2.7e-74	248.5	0.0	3.5e-74	248.2	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1297)
DUF1246	PF06849.7	gi|408402898|ref|YP_006860881.1|	-	6.3e-37	126.1	0.0	9.3e-37	125.5	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1246)
ATP-grasp_4	PF13535.1	gi|408402898|ref|YP_006860881.1|	-	5.3e-05	23.0	0.0	0.00039	20.2	0.0	2.0	1	1	0	1	1	1	1	ATP-grasp	domain
CPSase_L_D2	PF02786.12	gi|408402898|ref|YP_006860881.1|	-	0.05	12.8	0.0	0.094	11.9	0.0	1.5	1	0	0	1	1	1	0	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
Ehbp	PF10622.4	gi|408402898|ref|YP_006860881.1|	-	0.076	12.9	0.0	0.15	12.0	0.0	1.5	1	0	0	1	1	1	0	Energy-converting	hydrogenase	B	subunit	P	(EhbP)
DUF448	PF04296.8	gi|408402898|ref|YP_006860881.1|	-	0.082	12.5	0.0	0.18	11.4	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF448)
dCMP_cyt_deam_1	PF00383.17	gi|408402899|ref|YP_006860882.1|	-	6.1e-07	29.0	0.0	2.4e-06	27.1	0.0	1.8	2	0	0	2	2	2	1	Cytidine	and	deoxycytidylate	deaminase	zinc-binding	region
FliG_N	PF14842.1	gi|408402901|ref|YP_006860884.1|	-	0.087	12.9	0.7	0.2	11.7	0.5	1.6	1	0	0	1	1	1	0	FliG	N-terminal	domain
DUF1542	PF07564.6	gi|408402901|ref|YP_006860884.1|	-	0.12	12.3	6.5	3.5	7.6	0.1	2.9	3	0	0	3	3	3	0	Domain	of	Unknown	Function	(DUF1542)
YtkA	PF13115.1	gi|408402903|ref|YP_006860886.1|	-	0.0025	18.1	0.0	0.0037	17.5	0.0	1.3	1	0	0	1	1	1	1	YtkA-like
ETRAMP	PF09716.5	gi|408402903|ref|YP_006860886.1|	-	0.18	11.7	1.0	8.1	6.4	0.0	2.2	2	0	0	2	2	2	0	Malarial	early	transcribed	membrane	protein	(ETRAMP)
HTH_5	PF01022.15	gi|408402904|ref|YP_006860887.1|	-	4.9e-17	61.3	0.1	2.2e-11	43.2	0.0	2.4	2	0	0	2	2	2	2	Bacterial	regulatory	protein,	arsR	family
HTH_24	PF13412.1	gi|408402904|ref|YP_006860887.1|	-	3.5e-14	51.9	0.0	7.1e-06	25.3	0.0	2.4	2	0	0	2	2	2	2	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.2	gi|408402904|ref|YP_006860887.1|	-	6.4e-13	48.3	0.3	2.7e-05	23.8	0.0	2.2	2	0	0	2	2	2	2	Helix-turn-helix	domain
MarR_2	PF12802.2	gi|408402904|ref|YP_006860887.1|	-	6.1e-10	38.6	0.1	3.7e-05	23.3	0.0	2.3	2	0	0	2	2	2	2	MarR	family
HTH_34	PF13601.1	gi|408402904|ref|YP_006860887.1|	-	7.1e-08	32.3	0.0	0.015	15.2	0.0	2.2	2	0	0	2	2	2	2	Winged	helix	DNA-binding	domain
MarR	PF01047.17	gi|408402904|ref|YP_006860887.1|	-	2.2e-07	30.4	0.1	0.0065	16.1	0.0	2.4	2	0	0	2	2	2	2	MarR	family
TrmB	PF01978.14	gi|408402904|ref|YP_006860887.1|	-	3.8e-07	29.7	0.2	0.00045	19.8	0.0	2.3	2	0	0	2	2	2	2	Sugar-specific	transcriptional	regulator	TrmB
DUF2513	PF10711.4	gi|408402904|ref|YP_006860887.1|	-	3.4e-06	27.0	0.1	0.078	13.0	0.0	2.8	2	1	0	2	2	2	2	Hypothetical	protein	(DUF2513)
Rrf2	PF02082.15	gi|408402904|ref|YP_006860887.1|	-	2e-05	24.6	0.1	0.01	15.9	0.0	2.2	2	0	0	2	2	2	1	Transcriptional	regulator
Sulfolobus_pRN	PF05584.6	gi|408402904|ref|YP_006860887.1|	-	3.3e-05	23.7	0.4	0.00085	19.2	0.0	2.4	2	1	0	2	2	2	1	Sulfolobus	plasmid	regulatory	protein
Penicillinase_R	PF03965.11	gi|408402904|ref|YP_006860887.1|	-	0.00028	20.9	0.7	0.18	11.8	0.0	3.0	2	2	1	3	3	3	1	Penicillinase	repressor
HTH_Crp_2	PF13545.1	gi|408402904|ref|YP_006860887.1|	-	0.00052	19.7	0.0	0.011	15.5	0.0	2.2	2	0	0	2	2	2	1	Crp-like	helix-turn-helix	domain
HTH_IclR	PF09339.5	gi|408402904|ref|YP_006860887.1|	-	0.0013	18.2	0.0	0.19	11.3	0.0	2.3	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_38	PF13936.1	gi|408402904|ref|YP_006860887.1|	-	0.0039	16.7	0.0	0.011	15.2	0.0	1.8	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_27	PF13463.1	gi|408402904|ref|YP_006860887.1|	-	0.0046	17.2	0.8	1.4	9.2	0.1	3.0	2	1	0	2	2	2	1	Winged	helix	DNA-binding	domain
LexA_DNA_bind	PF01726.11	gi|408402904|ref|YP_006860887.1|	-	0.019	14.5	0.2	0.54	9.8	0.0	2.6	2	1	0	2	2	2	0	LexA	DNA	binding	domain
Cdc6_C	PF09079.6	gi|408402904|ref|YP_006860887.1|	-	0.021	14.5	0.1	1.5	8.5	0.0	2.5	2	0	0	2	2	2	0	CDC6,	C	terminal
HTH_DeoR	PF08220.7	gi|408402904|ref|YP_006860887.1|	-	0.028	13.9	0.0	0.069	12.6	0.0	1.6	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
Mitoc_L55	PF09776.4	gi|408402904|ref|YP_006860887.1|	-	0.029	13.9	0.1	0.054	13.0	0.0	1.5	1	0	0	1	1	1	0	Mitochondrial	ribosomal	protein	L55
Methyltransf_11	PF08241.7	gi|408402904|ref|YP_006860887.1|	-	0.032	14.7	0.0	0.053	14.0	0.0	1.4	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|408402904|ref|YP_006860887.1|	-	0.046	13.3	0.0	0.063	12.8	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	domain
TFIIE_alpha	PF02002.12	gi|408402904|ref|YP_006860887.1|	-	0.093	12.2	0.3	8.1	6.0	0.0	2.4	1	1	1	2	2	2	0	TFIIE	alpha	subunit
RP-C	PF03428.8	gi|408402904|ref|YP_006860887.1|	-	0.12	11.8	0.1	1.2	8.5	0.0	2.1	2	0	0	2	2	2	0	Replication	protein	C	N-terminal	domain
HTH_40	PF14493.1	gi|408402904|ref|YP_006860887.1|	-	0.13	12.4	0.3	0.94	9.7	0.0	2.3	1	1	2	3	3	3	0	Helix-turn-helix	domain
MerE	PF05052.7	gi|408402905|ref|YP_006860888.1|	-	0.18	11.7	2.0	0.2	11.6	0.4	1.8	1	1	1	2	2	2	0	MerE	protein
ABC2_membrane_5	PF13346.1	gi|408402905|ref|YP_006860888.1|	-	0.66	9.2	15.5	0.83	8.9	10.7	1.1	1	0	0	1	1	1	0	ABC-2	family	transporter	protein
Arteri_Gl	PF00951.13	gi|408402905|ref|YP_006860888.1|	-	2.3	7.8	6.7	2.8	7.5	4.1	1.5	1	1	0	1	1	1	0	Arterivirus	GL	envelope	glycoprotein
CopC	PF04234.7	gi|408402906|ref|YP_006860889.1|	-	3.6e-17	62.7	0.0	7.9e-17	61.6	0.0	1.6	1	0	0	1	1	1	1	CopC	domain
SGL	PF08450.7	gi|408402906|ref|YP_006860889.1|	-	2.3e-12	46.8	2.0	2.1e-07	30.5	0.1	4.1	2	1	3	5	5	5	3	SMP-30/Gluconolaconase/LRE-like	region
CopD	PF05425.8	gi|408402906|ref|YP_006860889.1|	-	3.3e-09	36.8	9.3	3.3e-09	36.8	6.4	3.1	2	1	1	3	3	3	2	Copper	resistance	protein	D
Reg_prop	PF07494.6	gi|408402906|ref|YP_006860889.1|	-	3.3e-07	29.5	13.5	0.24	11.5	0.1	8.1	9	0	0	9	9	9	2	Two	component	regulator	propeller
NHL	PF01436.16	gi|408402906|ref|YP_006860889.1|	-	5.8e-06	26.0	0.4	2	8.5	0.0	5.1	5	0	0	5	5	5	2	NHL	repeat
SBBP	PF06739.6	gi|408402906|ref|YP_006860889.1|	-	0.00023	20.8	0.1	1.4	8.8	0.0	4.1	5	0	0	5	5	5	2	Beta-propeller	repeat
DUF4149	PF13664.1	gi|408402906|ref|YP_006860889.1|	-	0.0039	17.2	5.1	0.0039	17.2	3.6	2.9	2	1	0	2	2	2	1	Domain	of	unknown	function	(DUF4149)
YtkA	PF13115.1	gi|408402906|ref|YP_006860889.1|	-	0.015	15.6	0.0	0.16	12.3	0.0	2.2	2	0	0	2	2	2	0	YtkA-like
Wzt_C	PF14524.1	gi|408402906|ref|YP_006860889.1|	-	0.08	12.6	0.0	0.16	11.6	0.0	1.4	1	0	0	1	1	1	0	Wzt	C-terminal	domain
YtkA	PF13115.1	gi|408402908|ref|YP_006860891.1|	-	0.00032	20.9	0.0	0.00066	19.9	0.0	1.5	2	0	0	2	2	2	1	YtkA-like
DUF1206	PF06724.6	gi|408402908|ref|YP_006860891.1|	-	0.0018	18.0	0.7	0.0054	16.4	0.5	1.8	1	0	0	1	1	1	1	Domain	of	Unknown	Function	(DUF1206)
TcdA_TcdB_pore	PF12920.2	gi|408402908|ref|YP_006860891.1|	-	0.0047	14.9	3.8	0.0061	14.5	2.6	1.1	1	0	0	1	1	1	1	TcdA/TcdB	pore	forming	domain
DUF4473	PF14747.1	gi|408402908|ref|YP_006860891.1|	-	0.083	13.1	0.3	0.14	12.4	0.2	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4473)
GPI-anchored	PF10342.4	gi|408402910|ref|YP_006860893.1|	-	0.0099	16.3	0.0	1.5	9.3	0.0	2.2	1	1	1	2	2	2	2	Ser-Thr-rich	glycosyl-phosphatidyl-inositol-anchored	membrane	family
EMP24_GP25L	PF01105.19	gi|408402910|ref|YP_006860893.1|	-	0.011	15.4	0.0	0.015	15.0	0.0	1.3	1	0	0	1	1	1	0	emp24/gp25L/p24	family/GOLD
Y_Y_Y	PF07495.8	gi|408402910|ref|YP_006860893.1|	-	0.042	13.6	0.0	0.086	12.6	0.0	1.6	1	0	0	1	1	1	0	Y_Y_Y	domain
Big_3	PF07523.7	gi|408402910|ref|YP_006860893.1|	-	0.14	12.2	0.2	0.26	11.4	0.0	1.5	2	0	0	2	2	2	0	Bacterial	Ig-like	domain	(group	3)
Tad	PF13400.1	gi|408402910|ref|YP_006860893.1|	-	0.36	10.8	4.1	6.3	6.9	0.0	2.2	2	0	0	2	2	2	0	Putative	Flp	pilus-assembly	TadE/G-like
Cupredoxin_1	PF13473.1	gi|408402911|ref|YP_006860894.1|	-	3.4e-09	36.5	0.3	2.3e-06	27.4	0.0	3.1	2	2	1	3	3	3	2	Cupredoxin-like	domain
Copper-bind	PF00127.15	gi|408402911|ref|YP_006860894.1|	-	3.6e-09	36.7	0.4	8.4e-09	35.5	0.1	1.8	2	0	0	2	2	2	1	Copper	binding	proteins,	plastocyanin/azurin	family
DUF4352	PF11611.3	gi|408402911|ref|YP_006860894.1|	-	0.12	12.4	1.1	8.9	6.4	0.0	2.8	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4352)
Peripla_BP_2	PF01497.13	gi|408402912|ref|YP_006860895.1|	-	1.5e-36	125.7	0.0	1.7e-36	125.5	0.0	1.0	1	0	0	1	1	1	1	Periplasmic	binding	protein
Cass2	PF14526.1	gi|408402912|ref|YP_006860895.1|	-	0.13	12.3	0.0	0.21	11.6	0.0	1.3	1	0	0	1	1	1	0	Integron-associated	effector	binding	protein
Ribosomal_S10	PF00338.17	gi|408402913|ref|YP_006860896.1|	-	1.3e-27	95.4	0.0	1.4e-27	95.3	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S10p/S20e
GTP_EFTU	PF00009.22	gi|408402914|ref|YP_006860897.1|	-	8e-51	172.1	0.0	1.5e-50	171.2	0.0	1.4	1	0	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
GTP_EFTU_D3	PF03143.12	gi|408402914|ref|YP_006860897.1|	-	5.8e-29	100.1	0.2	1.7e-28	98.6	0.0	1.9	2	0	0	2	2	2	1	Elongation	factor	Tu	C-terminal	domain
GTP_EFTU_D2	PF03144.20	gi|408402914|ref|YP_006860897.1|	-	6.4e-17	61.4	3.3	4.5e-16	58.7	0.9	2.5	2	0	0	2	2	2	1	Elongation	factor	Tu	domain	2
GTP_EFTU_D4	PF14578.1	gi|408402914|ref|YP_006860897.1|	-	2.9e-05	23.6	1.4	5.8e-05	22.6	1.0	1.5	1	0	0	1	1	1	1	Elongation	factor	Tu	domain	4
MMR_HSR1	PF01926.18	gi|408402914|ref|YP_006860897.1|	-	0.00086	19.2	0.0	0.0023	17.8	0.0	1.7	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
Miro	PF08477.8	gi|408402914|ref|YP_006860897.1|	-	0.0087	16.5	0.1	0.051	14.0	0.0	2.2	1	1	0	1	1	1	1	Miro-like	protein
FBPase_3	PF01950.11	gi|408402915|ref|YP_006860898.1|	-	6.9e-153	508.9	0.0	7.9e-153	508.7	0.0	1.0	1	0	0	1	1	1	1	Fructose-1,6-bisphosphatase
TIM	PF00121.13	gi|408402916|ref|YP_006860899.1|	-	1.2e-27	96.5	1.5	5.1e-25	87.9	1.0	2.0	1	1	0	1	1	1	1	Triosephosphate	isomerase
ThiG	PF05690.9	gi|408402916|ref|YP_006860899.1|	-	3.7e-05	22.9	0.9	3.7e-05	22.9	0.7	1.8	2	0	0	2	2	2	1	Thiazole	biosynthesis	protein	ThiG
IGPS	PF00218.16	gi|408402916|ref|YP_006860899.1|	-	0.0004	19.5	0.1	0.00084	18.4	0.0	1.6	2	0	0	2	2	2	1	Indole-3-glycerol	phosphate	synthase
Trp_syntA	PF00290.15	gi|408402916|ref|YP_006860899.1|	-	0.017	13.6	0.2	0.028	12.9	0.2	1.3	1	0	0	1	1	1	0	Tryptophan	synthase	alpha	chain
His_biosynth	PF00977.16	gi|408402916|ref|YP_006860899.1|	-	0.026	13.7	0.5	0.055	12.7	0.2	1.6	2	0	0	2	2	2	0	Histidine	biosynthesis	protein
FMN_dh	PF01070.13	gi|408402916|ref|YP_006860899.1|	-	0.044	12.6	0.2	0.077	11.8	0.2	1.3	1	0	0	1	1	1	0	FMN-dependent	dehydrogenase
DUF524	PF04411.7	gi|408402917|ref|YP_006860900.1|	-	0.03	14.1	0.0	0.73	9.6	0.0	2.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF524)
LOH1CR12	PF10158.4	gi|408402917|ref|YP_006860900.1|	-	0.056	13.2	0.0	0.98	9.2	0.0	2.1	2	0	0	2	2	2	0	Tumour	suppressor	protein
EndoU_bacteria	PF14436.1	gi|408402920|ref|YP_006860903.1|	-	0.071	12.9	0.0	0.075	12.8	0.0	1.1	1	0	0	1	1	1	0	Bacterial	EndoU	nuclease
MarR	PF01047.17	gi|408402921|ref|YP_006860904.1|	-	0.086	12.5	0.0	0.22	11.2	0.0	1.7	1	0	0	1	1	1	0	MarR	family
MarR_2	PF12802.2	gi|408402921|ref|YP_006860904.1|	-	0.14	11.8	0.0	0.32	10.6	0.0	1.6	1	0	0	1	1	1	0	MarR	family
HipA_C	PF07804.7	gi|408402922|ref|YP_006860905.1|	-	0.0039	17.2	0.1	0.008	16.2	0.0	1.5	1	0	0	1	1	1	1	HipA-like	C-terminal	domain
Carbpep_Y_N	PF05388.6	gi|408402923|ref|YP_006860906.1|	-	0.027	14.6	0.1	0.034	14.3	0.1	1.1	1	0	0	1	1	1	0	Carboxypeptidase	Y	pro-peptide
Phage_integrase	PF00589.17	gi|408402924|ref|YP_006860907.1|	-	0.052	13.2	0.1	0.17	11.5	0.0	1.9	1	1	0	1	1	1	0	Phage	integrase	family
HTH_38	PF13936.1	gi|408402925|ref|YP_006860908.1|	-	7.5e-05	22.1	0.1	0.00039	19.9	0.0	2.2	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_24	PF13412.1	gi|408402925|ref|YP_006860908.1|	-	0.0048	16.2	0.0	0.0088	15.4	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
Ribosomal_L27	PF01016.14	gi|408402925|ref|YP_006860908.1|	-	0.058	13.1	0.3	0.11	12.2	0.2	1.4	1	0	0	1	1	1	0	Ribosomal	L27	protein
DUF977	PF06163.6	gi|408402925|ref|YP_006860908.1|	-	0.077	12.7	0.1	0.12	12.1	0.1	1.4	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF977)
HTH_5	PF01022.15	gi|408402925|ref|YP_006860908.1|	-	0.13	11.9	0.0	1.1	9.0	0.0	2.3	3	0	0	3	3	3	0	Bacterial	regulatory	protein,	arsR	family
Transposase_20	PF02371.11	gi|408402927|ref|YP_006860910.1|	-	1.7e-18	66.4	0.0	2.6e-18	65.9	0.0	1.3	1	0	0	1	1	1	1	Transposase	IS116/IS110/IS902	family
DEDD_Tnp_IS110	PF01548.12	gi|408402929|ref|YP_006860912.1|	-	1.9e-21	76.2	0.0	2.3e-21	75.9	0.0	1.0	1	0	0	1	1	1	1	Transposase
Bac_luciferase	PF00296.15	gi|408402930|ref|YP_006860913.1|	-	2.5e-62	210.7	0.0	3e-62	210.4	0.0	1.0	1	0	0	1	1	1	1	Luciferase-like	monooxygenase
DUF217	PF02697.9	gi|408402932|ref|YP_006860915.1|	-	7.8e-06	26.0	0.9	1.3e-05	25.3	0.6	1.3	1	0	0	1	1	1	1	Uncharacterized	ACR,	COG1753
Asp_protease_2	PF13650.1	gi|408402933|ref|YP_006860916.1|	-	1.4e-08	35.1	0.0	2e-08	34.6	0.0	1.1	1	0	0	1	1	1	1	Aspartyl	protease
Asp_protease	PF09668.5	gi|408402933|ref|YP_006860916.1|	-	0.0031	17.0	0.0	0.0038	16.7	0.0	1.1	1	0	0	1	1	1	1	Aspartyl	protease
Alpha-amylase_N	PF02903.9	gi|408402933|ref|YP_006860916.1|	-	0.045	13.7	0.0	0.12	12.3	0.0	1.7	2	0	0	2	2	2	0	Alpha	amylase,	N-terminal	ig-like	domain
PAS_8	PF13188.1	gi|408402933|ref|YP_006860916.1|	-	0.06	13.2	0.0	0.11	12.3	0.0	1.5	1	0	0	1	1	1	0	PAS	domain
gag-asp_proteas	PF13975.1	gi|408402933|ref|YP_006860916.1|	-	0.12	12.2	0.0	0.2	11.4	0.0	1.3	1	0	0	1	1	1	0	gag-polyprotein	putative	aspartyl	protease
DUF2129	PF09902.4	gi|408402934|ref|YP_006860917.1|	-	0.031	14.0	5.3	0.68	9.7	0.4	2.3	1	1	1	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2129)
HTH_24	PF13412.1	gi|408402936|ref|YP_006860919.1|	-	1.1e-05	24.6	0.1	2.4e-05	23.6	0.1	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
Phage_integrase	PF00589.17	gi|408402936|ref|YP_006860919.1|	-	0.00064	19.4	0.0	0.0029	17.2	0.0	2.1	1	1	0	1	1	1	1	Phage	integrase	family
HRDC	PF00570.18	gi|408402936|ref|YP_006860919.1|	-	0.014	15.0	0.1	0.073	12.7	0.0	2.2	2	0	0	2	2	2	0	HRDC	domain
HTH_29	PF13551.1	gi|408402936|ref|YP_006860919.1|	-	0.023	14.8	0.6	0.23	11.6	0.0	2.7	2	1	1	3	3	3	0	Winged	helix-turn	helix
HTH_IclR	PF09339.5	gi|408402936|ref|YP_006860919.1|	-	0.081	12.5	0.0	0.22	11.1	0.0	1.8	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
DUF977	PF06163.6	gi|408402936|ref|YP_006860919.1|	-	0.11	12.1	0.1	0.5	10.1	0.0	2.0	2	0	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF977)
zf-C2H2_4	PF13894.1	gi|408402937|ref|YP_006860920.1|	-	0.086	13.2	0.8	1.4	9.4	0.0	2.8	2	0	0	2	2	2	0	C2H2-type	zinc	finger
zf-C2H2	PF00096.21	gi|408402937|ref|YP_006860920.1|	-	0.51	10.7	0.1	0.51	10.7	0.1	2.8	3	0	0	3	3	3	0	Zinc	finger,	C2H2	type
OSTMP1	PF09777.4	gi|408402938|ref|YP_006860921.1|	-	0.046	12.8	0.0	0.058	12.5	0.0	1.2	1	0	0	1	1	1	0	Osteopetrosis-associated	transmembrane	protein	1	precursor
Prenyltrans	PF00432.16	gi|408402939|ref|YP_006860922.1|	-	0.043	13.3	0.0	0.096	12.2	0.0	1.6	1	0	0	1	1	1	0	Prenyltransferase	and	squalene	oxidase	repeat
zf-C2H2	PF00096.21	gi|408402940|ref|YP_006860923.1|	-	0.12	12.7	0.6	0.37	11.2	0.2	1.8	1	1	1	2	2	2	0	Zinc	finger,	C2H2	type
DDE_Tnp_1	PF01609.16	gi|408402943|ref|YP_006860926.1|	-	0.0042	16.6	0.2	0.0078	15.7	0.1	1.5	1	1	0	1	1	1	1	Transposase	DDE	domain
DUF1815	PF08844.5	gi|408402943|ref|YP_006860926.1|	-	0.018	14.6	0.2	0.049	13.2	0.0	1.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1815)
Cas6	PF09559.5	gi|408402946|ref|YP_006860929.1|	-	0.051	13.2	0.0	0.051	13.2	0.0	1.0	1	0	0	1	1	1	0	Cas6	Crispr
DUF1981	PF09324.5	gi|408402947|ref|YP_006860930.1|	-	0.043	13.3	0.0	0.19	11.3	0.0	2.0	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF1981)
DUF3729	PF12526.3	gi|408402947|ref|YP_006860930.1|	-	5.3	8.4	10.2	15	6.9	0.3	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3729)
AAA_10	PF12846.2	gi|408402949|ref|YP_006860932.1|	-	0.001	18.5	0.0	0.0063	15.9	0.0	1.9	2	0	0	2	2	2	1	AAA-like	domain
AAA_22	PF13401.1	gi|408402949|ref|YP_006860932.1|	-	0.014	15.5	0.0	0.03	14.4	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
AAA_16	PF13191.1	gi|408402949|ref|YP_006860932.1|	-	0.018	15.0	0.0	0.21	11.5	0.0	1.8	1	1	1	2	2	2	0	AAA	ATPase	domain
Miro	PF08477.8	gi|408402949|ref|YP_006860932.1|	-	0.092	13.2	0.0	0.19	12.2	0.0	1.6	1	0	0	1	1	1	0	Miro-like	protein
DUF4386	PF14329.1	gi|408402952|ref|YP_006860935.1|	-	0.0092	15.4	0.3	0.0096	15.4	0.2	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4386)
TrbC	PF04956.8	gi|408402952|ref|YP_006860935.1|	-	0.027	14.4	0.8	0.027	14.4	0.6	1.1	1	0	0	1	1	1	0	TrbC/VIRB2	family
SLAC1	PF03595.12	gi|408402953|ref|YP_006860936.1|	-	0.019	13.6	0.0	0.02	13.5	0.0	1.0	1	0	0	1	1	1	0	Voltage-dependent	anion	channel
Transport_MerF	PF11431.3	gi|408402953|ref|YP_006860936.1|	-	0.059	13.0	0.0	0.072	12.7	0.0	1.1	1	0	0	1	1	1	0	Membrane	transport	protein	MerF
Cad	PF03596.8	gi|408402953|ref|YP_006860936.1|	-	0.079	12.6	0.0	0.079	12.6	0.0	1.1	1	0	0	1	1	1	0	Cadmium	resistance	transporter
DUF605	PF04652.11	gi|408402960|ref|YP_006860943.1|	-	0.073	12.4	6.6	0.082	12.2	4.6	1.1	1	0	0	1	1	1	0	Vta1	like
Trypan_PARP	PF05887.6	gi|408402960|ref|YP_006860943.1|	-	0.13	12.1	2.3	0.18	11.6	1.6	1.2	1	0	0	1	1	1	0	Procyclic	acidic	repetitive	protein	(PARP)
Plasmodium_Vir	PF05795.6	gi|408402960|ref|YP_006860943.1|	-	0.13	11.4	0.3	0.17	11.0	0.2	1.1	1	0	0	1	1	1	0	Plasmodium	vivax	Vir	protein
Pex14_N	PF04695.8	gi|408402960|ref|YP_006860943.1|	-	0.39	10.7	7.4	0.68	9.9	5.1	1.4	1	0	0	1	1	1	0	Peroxisomal	membrane	anchor	protein	(Pex14p)	conserved	region
Lamp	PF01299.12	gi|408402960|ref|YP_006860943.1|	-	1.6	7.8	11.0	2	7.4	7.6	1.2	1	0	0	1	1	1	0	Lysosome-associated	membrane	glycoprotein	(Lamp)
DUF217	PF02697.9	gi|408402962|ref|YP_006860945.1|	-	7.8e-06	26.0	0.9	1.3e-05	25.3	0.6	1.3	1	0	0	1	1	1	1	Uncharacterized	ACR,	COG1753
Asp_protease_2	PF13650.1	gi|408402963|ref|YP_006860946.1|	-	1.4e-08	35.1	0.0	2e-08	34.6	0.0	1.1	1	0	0	1	1	1	1	Aspartyl	protease
Asp_protease	PF09668.5	gi|408402963|ref|YP_006860946.1|	-	0.0031	17.0	0.0	0.0038	16.7	0.0	1.1	1	0	0	1	1	1	1	Aspartyl	protease
Alpha-amylase_N	PF02903.9	gi|408402963|ref|YP_006860946.1|	-	0.045	13.7	0.0	0.12	12.3	0.0	1.7	2	0	0	2	2	2	0	Alpha	amylase,	N-terminal	ig-like	domain
PAS_8	PF13188.1	gi|408402963|ref|YP_006860946.1|	-	0.06	13.2	0.0	0.11	12.3	0.0	1.5	1	0	0	1	1	1	0	PAS	domain
gag-asp_proteas	PF13975.1	gi|408402963|ref|YP_006860946.1|	-	0.12	12.2	0.0	0.2	11.4	0.0	1.3	1	0	0	1	1	1	0	gag-polyprotein	putative	aspartyl	protease
DUF2129	PF09902.4	gi|408402964|ref|YP_006860947.1|	-	0.031	14.0	5.3	0.68	9.7	0.4	2.3	1	1	1	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2129)
HTH_24	PF13412.1	gi|408402966|ref|YP_006860949.1|	-	1.1e-05	24.6	0.1	2.4e-05	23.6	0.1	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
Phage_integrase	PF00589.17	gi|408402966|ref|YP_006860949.1|	-	0.00064	19.4	0.0	0.0029	17.2	0.0	2.1	1	1	0	1	1	1	1	Phage	integrase	family
HRDC	PF00570.18	gi|408402966|ref|YP_006860949.1|	-	0.014	15.0	0.1	0.073	12.7	0.0	2.2	2	0	0	2	2	2	0	HRDC	domain
HTH_29	PF13551.1	gi|408402966|ref|YP_006860949.1|	-	0.023	14.8	0.6	0.23	11.6	0.0	2.7	2	1	1	3	3	3	0	Winged	helix-turn	helix
HTH_IclR	PF09339.5	gi|408402966|ref|YP_006860949.1|	-	0.081	12.5	0.0	0.22	11.1	0.0	1.8	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
DUF977	PF06163.6	gi|408402966|ref|YP_006860949.1|	-	0.11	12.1	0.1	0.5	10.1	0.0	2.0	2	0	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF977)
zf-C2H2_4	PF13894.1	gi|408402967|ref|YP_006860950.1|	-	0.086	13.2	0.8	1.4	9.4	0.0	2.8	2	0	0	2	2	2	0	C2H2-type	zinc	finger
zf-C2H2	PF00096.21	gi|408402967|ref|YP_006860950.1|	-	0.51	10.7	0.1	0.51	10.7	0.1	2.8	3	0	0	3	3	3	0	Zinc	finger,	C2H2	type
OSTMP1	PF09777.4	gi|408402968|ref|YP_006860951.1|	-	0.046	12.8	0.0	0.058	12.5	0.0	1.2	1	0	0	1	1	1	0	Osteopetrosis-associated	transmembrane	protein	1	precursor
Prenyltrans	PF00432.16	gi|408402969|ref|YP_006860952.1|	-	0.043	13.3	0.0	0.096	12.2	0.0	1.6	1	0	0	1	1	1	0	Prenyltransferase	and	squalene	oxidase	repeat
zf-C2H2	PF00096.21	gi|408402970|ref|YP_006860953.1|	-	0.12	12.7	0.6	0.37	11.2	0.2	1.8	1	1	1	2	2	2	0	Zinc	finger,	C2H2	type
DZR	PF12773.2	gi|408402973|ref|YP_006860956.1|	-	0.014	15.2	2.3	0.018	14.8	1.6	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
zf-C3HC4_3	PF13920.1	gi|408402973|ref|YP_006860956.1|	-	0.15	11.7	5.3	0.26	10.9	3.7	1.4	1	0	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
zf-C4H2	PF10146.4	gi|408402973|ref|YP_006860956.1|	-	1	9.3	6.1	1.1	9.2	4.2	1.1	1	0	0	1	1	1	0	Zinc	finger-containing	protein
DUF1660	PF07874.6	gi|408402973|ref|YP_006860956.1|	-	3.9	7.8	8.0	6.6	7.0	5.6	1.5	1	1	0	1	1	1	0	Prophage	protein	(DUF1660)
Cas6	PF09559.5	gi|408402975|ref|YP_006860958.1|	-	0.051	13.2	0.0	0.051	13.2	0.0	1.0	1	0	0	1	1	1	0	Cas6	Crispr
DUF1981	PF09324.5	gi|408402976|ref|YP_006860959.1|	-	0.043	13.3	0.0	0.19	11.3	0.0	2.0	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF1981)
DUF3729	PF12526.3	gi|408402976|ref|YP_006860959.1|	-	5.3	8.4	10.2	15	6.9	0.3	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3729)
AAA_10	PF12846.2	gi|408402978|ref|YP_006860961.1|	-	0.001	18.5	0.0	0.0063	15.9	0.0	1.9	2	0	0	2	2	2	1	AAA-like	domain
AAA_22	PF13401.1	gi|408402978|ref|YP_006860961.1|	-	0.014	15.5	0.0	0.03	14.4	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
AAA_16	PF13191.1	gi|408402978|ref|YP_006860961.1|	-	0.018	15.0	0.0	0.21	11.5	0.0	1.8	1	1	1	2	2	2	0	AAA	ATPase	domain
Miro	PF08477.8	gi|408402978|ref|YP_006860961.1|	-	0.092	13.2	0.0	0.19	12.2	0.0	1.6	1	0	0	1	1	1	0	Miro-like	protein
DUF4386	PF14329.1	gi|408402981|ref|YP_006860964.1|	-	0.0092	15.4	0.3	0.0096	15.4	0.2	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4386)
TrbC	PF04956.8	gi|408402981|ref|YP_006860964.1|	-	0.027	14.4	0.8	0.027	14.4	0.6	1.1	1	0	0	1	1	1	0	TrbC/VIRB2	family
SLAC1	PF03595.12	gi|408402982|ref|YP_006860965.1|	-	0.019	13.6	0.0	0.02	13.5	0.0	1.0	1	0	0	1	1	1	0	Voltage-dependent	anion	channel
Transport_MerF	PF11431.3	gi|408402982|ref|YP_006860965.1|	-	0.059	13.0	0.0	0.072	12.7	0.0	1.1	1	0	0	1	1	1	0	Membrane	transport	protein	MerF
Cad	PF03596.8	gi|408402982|ref|YP_006860965.1|	-	0.079	12.6	0.0	0.079	12.6	0.0	1.1	1	0	0	1	1	1	0	Cadmium	resistance	transporter
NDUF_B12	PF08122.7	gi|408402984|ref|YP_006860967.1|	-	0.086	12.5	0.5	6.9	6.4	0.0	2.0	1	1	1	2	2	2	0	NADH-ubiquinone	oxidoreductase	B12	subunit	family
SPW	PF03779.9	gi|408402984|ref|YP_006860967.1|	-	0.11	11.9	3.8	0.086	12.2	1.5	1.7	2	0	0	2	2	2	0	SPW	repeat
MtrF	PF09472.5	gi|408402984|ref|YP_006860967.1|	-	2.8	7.2	6.0	0.25	10.5	0.5	1.8	2	0	0	2	2	2	0	Tetrahydromethanopterin	S-methyltransferase,	F	subunit	(MtrF)
Fer4_20	PF14691.1	gi|408402985|ref|YP_006860968.1|	-	0.066	12.8	0.6	0.071	12.7	0.4	1.1	1	0	0	1	1	1	0	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
DUF1299	PF06975.6	gi|408402991|ref|YP_006860974.1|	-	0.12	12.2	3.2	9.6	6.1	0.2	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1299)
DUF605	PF04652.11	gi|408402991|ref|YP_006860974.1|	-	4.3	6.6	26.5	5.8	6.2	18.3	1.1	1	0	0	1	1	1	0	Vta1	like
Malic_M	PF03949.10	gi|408402993|ref|YP_006860976.1|	-	4e-58	196.9	0.6	6.8e-58	196.2	0.2	1.5	2	0	0	2	2	2	1	Malic	enzyme,	NAD	binding	domain
malic	PF00390.14	gi|408402993|ref|YP_006860976.1|	-	4e-27	94.9	0.1	1.6e-24	86.4	0.0	2.4	1	1	0	1	1	1	1	Malic	enzyme,	N-terminal	domain
ThiF	PF00899.16	gi|408402993|ref|YP_006860976.1|	-	0.00036	20.3	0.1	0.0019	18.0	0.0	2.4	3	0	0	3	3	3	1	ThiF	family
Shikimate_DH	PF01488.15	gi|408402993|ref|YP_006860976.1|	-	0.0018	18.3	0.9	0.0065	16.5	0.1	2.2	2	1	0	2	2	2	1	Shikimate	/	quinate	5-dehydrogenase
AdoHcyase_NAD	PF00670.16	gi|408402993|ref|YP_006860976.1|	-	0.0033	17.2	0.2	0.028	14.2	0.1	2.3	1	1	0	1	1	1	1	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
ELFV_dehydrog	PF00208.16	gi|408402993|ref|YP_006860976.1|	-	0.0078	15.8	0.1	0.016	14.8	0.1	1.5	1	0	0	1	1	1	1	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
THF_DHG_CYH_C	PF02882.14	gi|408402993|ref|YP_006860976.1|	-	0.054	12.5	1.6	0.77	8.8	0.1	2.9	3	0	0	3	3	3	0	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
BRCA-2_helical	PF09169.5	gi|408402993|ref|YP_006860976.1|	-	0.16	11.4	0.5	0.32	10.5	0.4	1.4	1	0	0	1	1	1	0	BRCA2,	helical
Citrate_synt	PF00285.16	gi|408402994|ref|YP_006860977.1|	-	1.3e-135	451.7	0.1	1.4e-135	451.6	0.0	1.0	1	0	0	1	1	1	1	Citrate	synthase
AIRS_C	PF02769.17	gi|408402995|ref|YP_006860978.1|	-	2.7e-21	76.1	0.1	6.4e-21	74.9	0.0	1.6	2	0	0	2	2	2	1	AIR	synthase	related	protein,	C-terminal	domain
AIRS	PF00586.19	gi|408402995|ref|YP_006860978.1|	-	1.2e-15	57.5	0.1	2.7e-15	56.3	0.1	1.6	1	0	0	1	1	1	1	AIR	synthase	related	protein,	N-terminal	domain
Radical_SAM	PF04055.16	gi|408402996|ref|YP_006860979.1|	-	3.7e-21	75.9	0.0	9.6e-21	74.6	0.0	1.7	1	0	0	1	1	1	1	Radical	SAM	superfamily
Acetyltransf_1	PF00583.19	gi|408402996|ref|YP_006860979.1|	-	3.5e-10	39.7	0.3	1.2e-09	38.0	0.2	2.0	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.1	gi|408402996|ref|YP_006860979.1|	-	0.0011	19.0	0.0	0.0033	17.5	0.0	1.8	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.1	gi|408402996|ref|YP_006860979.1|	-	0.0048	17.0	0.1	0.016	15.3	0.1	1.9	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.1	gi|408402996|ref|YP_006860979.1|	-	0.083	12.8	0.0	0.37	10.7	0.0	2.2	2	1	0	2	2	2	0	Acetyltransferase	(GNAT)	domain
tRNA-synt_1f	PF01921.13	gi|408402997|ref|YP_006860980.1|	-	2.7e-102	342.1	0.0	3.6e-102	341.7	0.0	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(K)
Zn_ribbon_recom	PF13408.1	gi|408402997|ref|YP_006860980.1|	-	0.04	14.1	1.4	0.094	12.9	1.0	1.6	1	0	0	1	1	1	0	Recombinase	zinc	beta	ribbon	domain
tRNA-synt_1	PF00133.17	gi|408402997|ref|YP_006860980.1|	-	0.071	11.0	0.0	0.11	10.4	0.0	1.2	1	0	0	1	1	1	0	tRNA	synthetases	class	I	(I,	L,	M	and	V)
tRNA-synt_1g	PF09334.6	gi|408402997|ref|YP_006860980.1|	-	0.074	11.6	0.0	0.2	10.2	0.0	1.8	2	0	0	2	2	2	0	tRNA	synthetases	class	I	(M)
DUF911	PF06023.7	gi|408402999|ref|YP_006860982.1|	-	2.3e-70	237.1	0.0	3.9e-69	233.0	0.0	1.9	1	1	0	1	1	1	1	Archaeal	protein	of	unknown	function	(DUF911)
Cas_Cas1	PF01867.11	gi|408403000|ref|YP_006860983.1|	-	2.2e-65	220.5	0.0	2.7e-65	220.2	0.0	1.1	1	0	0	1	1	1	1	CRISPR	associated	protein	Cas1
BAG	PF02179.11	gi|408403000|ref|YP_006860983.1|	-	0.14	12.2	1.8	13	5.9	0.0	2.5	2	0	0	2	2	2	0	BAG	domain
CRISPR_Cas2	PF09827.4	gi|408403001|ref|YP_006860984.1|	-	2.2e-17	62.9	0.2	3e-17	62.5	0.2	1.2	1	0	0	1	1	1	1	CRISPR	associated	protein	Cas2
Cas_Cas4	PF01930.12	gi|408403002|ref|YP_006860985.1|	-	2.7e-19	69.6	3.6	4.1e-19	69.0	2.5	1.3	1	1	0	1	1	1	1	Domain	of	unknown	function	DUF83
PDDEXK_1	PF12705.2	gi|408403002|ref|YP_006860985.1|	-	4.5e-15	55.7	0.6	6e-14	52.0	0.2	1.9	1	1	1	2	2	2	1	PD-(D/E)XK	nuclease	superfamily
DUF911	PF06023.7	gi|408403002|ref|YP_006860985.1|	-	0.0011	18.2	0.9	0.021	14.0	0.0	2.1	1	1	1	2	2	2	1	Archaeal	protein	of	unknown	function	(DUF911)
Hanta_G1	PF01567.11	gi|408403002|ref|YP_006860985.1|	-	0.01	14.1	0.2	0.013	13.8	0.1	1.1	1	0	0	1	1	1	0	Hantavirus	glycoprotein	G1
Phage_Cox	PF10743.4	gi|408403002|ref|YP_006860985.1|	-	0.042	13.8	0.0	0.084	12.8	0.0	1.5	1	0	0	1	1	1	0	Regulatory	phage	protein	cox
RRP14	PF15459.1	gi|408403002|ref|YP_006860985.1|	-	1.8	8.7	7.0	1	9.4	2.1	2.1	2	0	0	2	2	2	0	60S	ribosome	biogenesis	protein	Rrp14
UPF0175	PF03683.8	gi|408403004|ref|YP_006860987.1|	-	1.3e-09	37.3	0.0	2.3e-09	36.5	0.0	1.5	1	1	0	1	1	1	1	Uncharacterised	protein	family	(UPF0175)
RHH_1	PF01402.16	gi|408403004|ref|YP_006860987.1|	-	0.012	15.5	0.1	0.091	12.6	0.0	2.2	2	0	0	2	2	2	0	Ribbon-helix-helix	protein,	copG	family
Pox_TAA1	PF03295.9	gi|408403004|ref|YP_006860987.1|	-	0.079	12.6	0.0	1.7	8.3	0.0	2.1	2	0	0	2	2	2	0	Poxvirus	trans-activator	protein	A1	C-terminal
DEAD	PF00270.24	gi|408403006|ref|YP_006860989.1|	-	1.1e-10	41.2	0.1	4.6e-07	29.4	0.0	2.6	2	1	0	2	2	2	2	DEAD/DEAH	box	helicase
ResIII	PF04851.10	gi|408403006|ref|YP_006860989.1|	-	0.00019	21.3	0.0	0.00048	20.0	0.0	1.7	1	1	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
Helicase_C	PF00271.26	gi|408403006|ref|YP_006860989.1|	-	0.0039	17.0	0.0	0.0091	15.8	0.0	1.7	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
DUF677	PF05055.7	gi|408403006|ref|YP_006860989.1|	-	0.68	8.5	3.8	2.1	6.9	0.0	3.1	3	1	0	3	3	3	0	Protein	of	unknown	function	(DUF677)
Cas_Cas5d	PF09704.5	gi|408403007|ref|YP_006860990.1|	-	0.00051	19.7	0.0	0.00068	19.3	0.0	1.2	1	0	0	1	1	1	1	CRISPR-associated	protein	(Cas_Cas5)
DevR	PF01905.11	gi|408403008|ref|YP_006860991.1|	-	3.6e-14	52.2	0.0	9.6e-12	44.3	0.0	2.1	1	1	0	1	1	1	1	CRISPR-associated	negative	auto-regulator	DevR/Csa2
DUF2276	PF10040.4	gi|408403010|ref|YP_006860993.1|	-	9.3e-26	90.4	0.0	2.9e-25	88.8	0.0	1.8	2	0	0	2	2	2	1	Uncharacterized	conserved	protein	(DUF2276)
HMG_box	PF00505.14	gi|408403011|ref|YP_006860994.1|	-	0.0013	18.9	0.1	0.0017	18.5	0.1	1.2	1	0	0	1	1	1	1	HMG	(high	mobility	group)	box
EcoEI_R_C	PF08463.5	gi|408403011|ref|YP_006860994.1|	-	0.0081	16.0	0.8	0.0084	15.9	0.6	1.0	1	0	0	1	1	1	1	EcoEI	R	protein	C-terminal
Syntaxin_2	PF14523.1	gi|408403011|ref|YP_006860994.1|	-	0.015	15.3	2.0	0.022	14.7	1.4	1.4	1	0	0	1	1	1	0	Syntaxin-like	protein
BAR_3_WASP_bdg	PF10456.4	gi|408403011|ref|YP_006860994.1|	-	0.03	13.5	1.3	0.032	13.4	0.9	1.0	1	0	0	1	1	1	0	WASP-binding	domain	of	Sorting	nexin	protein
AAR2	PF05282.6	gi|408403011|ref|YP_006860994.1|	-	0.072	11.9	0.5	0.068	12.0	0.4	1.0	1	0	0	1	1	1	0	AAR2	protein
Sigma70_r4_2	PF08281.7	gi|408403012|ref|YP_006860995.1|	-	2.1e-05	23.8	0.0	6.3e-05	22.3	0.0	1.8	2	0	0	2	2	2	1	Sigma-70,	region	4
HTH_38	PF13936.1	gi|408403012|ref|YP_006860995.1|	-	0.0007	19.0	0.1	0.0032	16.9	0.0	2.3	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_11	PF08279.7	gi|408403012|ref|YP_006860995.1|	-	0.0032	17.0	0.2	0.033	13.8	0.0	2.6	2	1	1	3	3	3	1	HTH	domain
HTH_DeoR	PF08220.7	gi|408403012|ref|YP_006860995.1|	-	0.0048	16.3	1.3	0.73	9.4	0.0	3.0	3	0	0	3	3	3	1	DeoR-like	helix-turn-helix	domain
HTH_23	PF13384.1	gi|408403012|ref|YP_006860995.1|	-	0.0049	16.4	2.1	0.03	13.9	0.0	2.8	3	0	0	3	3	3	1	Homeodomain-like	domain
DUF4349	PF14257.1	gi|408403012|ref|YP_006860995.1|	-	0.018	14.3	1.4	0.026	13.7	1.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4349)
UPF0122	PF04297.9	gi|408403012|ref|YP_006860995.1|	-	0.019	14.9	0.3	1.4	8.9	0.0	2.5	1	1	0	2	2	2	0	Putative	helix-turn-helix	protein,	YlxM	/	p13	like
HTH_Tnp_ISL3	PF13542.1	gi|408403012|ref|YP_006860995.1|	-	0.023	13.8	0.0	0.058	12.5	0.0	1.7	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	transposase	family	ISL3
Phage_terminase	PF10668.4	gi|408403012|ref|YP_006860995.1|	-	0.065	13.0	1.0	2.3	8.0	0.0	2.5	2	0	0	2	2	2	0	Phage	terminase	small	subunit
Phage-MuB_C	PF09077.6	gi|408403013|ref|YP_006860996.1|	-	0.045	13.4	0.3	0.071	12.7	0.2	1.5	1	1	0	1	1	1	0	Mu	B	transposition	protein,	C	terminal
AAA	PF00004.24	gi|408403013|ref|YP_006860996.1|	-	0.082	13.1	0.1	0.21	11.7	0.0	1.7	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
DDE_Tnp_1	PF01609.16	gi|408403014|ref|YP_006860997.1|	-	0.0042	16.6	0.2	0.0078	15.7	0.1	1.5	1	1	0	1	1	1	1	Transposase	DDE	domain
DUF1815	PF08844.5	gi|408403014|ref|YP_006860997.1|	-	0.018	14.6	0.2	0.049	13.2	0.0	1.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1815)
AAA_22	PF13401.1	gi|408403015|ref|YP_006860998.1|	-	3e-06	27.4	0.0	3.8e-06	27.0	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
AAA_17	PF13207.1	gi|408403015|ref|YP_006860998.1|	-	1.3e-05	26.0	0.0	1.3e-05	26.0	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
NB-ARC	PF00931.17	gi|408403015|ref|YP_006860998.1|	-	1.8e-05	23.7	0.0	2e-05	23.6	0.0	1.1	1	0	0	1	1	1	1	NB-ARC	domain
Arch_ATPase	PF01637.13	gi|408403015|ref|YP_006860998.1|	-	0.0025	17.5	0.0	0.0025	17.5	0.0	1.1	1	0	0	1	1	1	1	Archaeal	ATPase
ABC_tran	PF00005.22	gi|408403015|ref|YP_006860998.1|	-	0.0041	17.4	0.0	0.0057	16.9	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA	PF00004.24	gi|408403015|ref|YP_006860998.1|	-	0.0071	16.5	0.0	0.008	16.3	0.0	1.2	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_16	PF13191.1	gi|408403015|ref|YP_006860998.1|	-	0.0089	16.0	0.0	0.0089	16.0	0.0	1.2	1	0	0	1	1	1	1	AAA	ATPase	domain
AAA_29	PF13555.1	gi|408403015|ref|YP_006860998.1|	-	0.0097	15.4	0.0	0.016	14.7	0.0	1.3	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_18	PF13238.1	gi|408403015|ref|YP_006860998.1|	-	0.015	15.6	0.0	0.016	15.4	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
AAA_33	PF13671.1	gi|408403015|ref|YP_006860998.1|	-	0.017	14.9	0.0	0.017	14.9	0.0	1.1	1	0	0	1	1	1	0	AAA	domain
NTPase_1	PF03266.10	gi|408403015|ref|YP_006860998.1|	-	0.019	14.6	0.0	0.027	14.1	0.0	1.3	1	1	0	1	1	1	0	NTPase
RNA_helicase	PF00910.17	gi|408403015|ref|YP_006860998.1|	-	0.024	14.8	0.0	0.032	14.4	0.0	1.3	1	0	0	1	1	1	0	RNA	helicase
AAA_23	PF13476.1	gi|408403015|ref|YP_006860998.1|	-	0.051	13.9	0.1	0.054	13.8	0.1	1.3	1	1	0	1	1	1	0	AAA	domain
DUF815	PF05673.8	gi|408403015|ref|YP_006860998.1|	-	0.059	12.2	0.0	0.059	12.2	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF815)
AAA_10	PF12846.2	gi|408403015|ref|YP_006860998.1|	-	0.063	12.7	0.1	0.094	12.1	0.0	1.2	1	0	0	1	1	1	0	AAA-like	domain
DUF87	PF01935.12	gi|408403015|ref|YP_006860998.1|	-	0.066	13.0	0.0	0.095	12.4	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	DUF87
MobB	PF03205.9	gi|408403015|ref|YP_006860998.1|	-	0.11	12.1	0.0	0.11	12.1	0.0	1.2	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
DUF258	PF03193.11	gi|408403015|ref|YP_006860998.1|	-	0.13	11.4	0.1	0.15	11.2	0.1	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function,	DUF258
ATP_bind_1	PF03029.12	gi|408403015|ref|YP_006860998.1|	-	0.15	11.5	0.1	0.19	11.2	0.1	1.1	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
DDE_Tnp_IS240	PF13610.1	gi|408403016|ref|YP_006860999.1|	-	1e-09	38.4	0.0	2.1e-09	37.4	0.0	1.5	1	0	0	1	1	1	1	DDE	domain
rve	PF00665.21	gi|408403016|ref|YP_006860999.1|	-	1.4e-05	25.1	0.2	2.5e-05	24.3	0.1	1.5	1	0	0	1	1	1	1	Integrase	core	domain
AraC_binding	PF02311.14	gi|408403017|ref|YP_006861000.1|	-	0.045	13.4	0.0	0.066	12.9	0.0	1.3	1	0	0	1	1	1	0	AraC-like	ligand	binding	domain
HAD_2	PF13419.1	gi|408403018|ref|YP_006861001.1|	-	4.2e-22	79.1	0.0	5.2e-22	78.8	0.0	1.0	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.21	gi|408403018|ref|YP_006861001.1|	-	2.1e-06	28.2	0.7	0.00011	22.7	0.5	2.1	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.1	gi|408403018|ref|YP_006861001.1|	-	0.0035	17.0	0.0	0.0066	16.1	0.0	1.4	1	0	0	1	1	1	1	HAD-hyrolase-like
NT5C	PF06941.7	gi|408403018|ref|YP_006861001.1|	-	0.034	13.6	0.1	0.056	12.9	0.0	1.5	1	1	0	1	1	1	0	5'	nucleotidase,	deoxy	(Pyrimidine),	cytosolic	type	C	protein	(NT5C)
Hydrolase_6	PF13344.1	gi|408403018|ref|YP_006861001.1|	-	0.044	13.6	0.0	0.63	9.9	0.0	2.6	1	1	0	1	1	1	0	Haloacid	dehalogenase-like	hydrolase
DHHA1	PF02272.14	gi|408403019|ref|YP_006861002.1|	-	1.4e-05	24.6	0.3	2.4e-05	23.9	0.2	1.4	1	0	0	1	1	1	1	DHHA1	domain
DHH	PF01368.15	gi|408403019|ref|YP_006861002.1|	-	0.00049	19.7	0.0	0.0013	18.3	0.0	1.7	1	1	0	1	1	1	1	DHH	family
Bacillus_HBL	PF05791.6	gi|408403019|ref|YP_006861002.1|	-	0.16	11.2	0.1	0.3	10.4	0.1	1.4	1	0	0	1	1	1	0	Bacillus	haemolytic	enterotoxin	(HBL)
adh_short_C2	PF13561.1	gi|408403020|ref|YP_006861003.1|	-	2.4e-38	132.2	0.0	2.7e-38	132.0	0.0	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.20	gi|408403020|ref|YP_006861003.1|	-	4.5e-32	111.2	0.0	5.5e-32	110.9	0.0	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.5	gi|408403020|ref|YP_006861003.1|	-	7.8e-11	41.9	0.0	1.1e-10	41.4	0.0	1.1	1	0	0	1	1	1	1	KR	domain
Epimerase	PF01370.16	gi|408403020|ref|YP_006861003.1|	-	9.1e-09	35.0	0.0	2.3e-08	33.7	0.0	1.6	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
Polysacc_synt_2	PF02719.10	gi|408403020|ref|YP_006861003.1|	-	1.3e-08	34.1	0.5	1.7e-08	33.7	0.4	1.1	1	0	0	1	1	1	1	Polysaccharide	biosynthesis	protein
NAD_binding_10	PF13460.1	gi|408403020|ref|YP_006861003.1|	-	9.8e-07	28.9	0.1	1.4e-06	28.4	0.0	1.2	1	0	0	1	1	1	1	NADH(P)-binding
Shikimate_DH	PF01488.15	gi|408403020|ref|YP_006861003.1|	-	1.1e-05	25.5	0.7	1.1e-05	25.5	0.5	1.8	2	0	0	2	2	2	1	Shikimate	/	quinate	5-dehydrogenase
3HCDH_N	PF02737.13	gi|408403020|ref|YP_006861003.1|	-	0.0003	20.5	0.5	0.00041	20.0	0.3	1.2	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
ApbA	PF02558.11	gi|408403020|ref|YP_006861003.1|	-	0.00085	18.7	0.1	0.0013	18.1	0.0	1.3	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
Saccharop_dh	PF03435.13	gi|408403020|ref|YP_006861003.1|	-	0.001	18.1	0.3	0.0014	17.7	0.2	1.1	1	0	0	1	1	1	1	Saccharopine	dehydrogenase
3Beta_HSD	PF01073.14	gi|408403020|ref|YP_006861003.1|	-	0.0015	17.3	0.3	0.0019	16.9	0.2	1.2	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
NAD_binding_4	PF07993.7	gi|408403020|ref|YP_006861003.1|	-	0.0063	15.4	0.2	0.013	14.4	0.1	1.5	1	1	0	1	1	1	1	Male	sterility	protein
RmlD_sub_bind	PF04321.12	gi|408403020|ref|YP_006861003.1|	-	0.0075	15.1	0.1	0.027	13.3	0.0	1.8	2	0	0	2	2	2	1	RmlD	substrate	binding	domain
F420_oxidored	PF03807.12	gi|408403020|ref|YP_006861003.1|	-	0.028	14.8	0.5	0.028	14.8	0.4	1.6	2	0	0	2	2	1	0	NADP	oxidoreductase	coenzyme	F420-dependent
TrkA_N	PF02254.13	gi|408403020|ref|YP_006861003.1|	-	0.055	13.4	0.2	0.099	12.6	0.1	1.4	1	0	0	1	1	1	0	TrkA-N	domain
2-Hacid_dh_C	PF02826.14	gi|408403020|ref|YP_006861003.1|	-	0.065	12.3	0.3	0.089	11.9	0.2	1.3	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
NmrA	PF05368.8	gi|408403020|ref|YP_006861003.1|	-	0.082	12.1	0.2	0.22	10.7	0.1	1.6	2	0	0	2	2	2	0	NmrA-like	family
AdoHcyase_NAD	PF00670.16	gi|408403020|ref|YP_006861003.1|	-	0.11	12.3	3.0	0.2	11.4	2.1	1.4	1	1	0	1	1	1	0	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
SUFU_C	PF12470.3	gi|408403021|ref|YP_006861004.1|	-	0.02	14.4	0.0	0.043	13.4	0.0	1.5	1	0	0	1	1	1	0	Suppressor	of	Fused	Gli/Ci	N	terminal	binding	domain
DUF2795	PF11387.3	gi|408403022|ref|YP_006861005.1|	-	1.1e-06	28.3	0.0	2.7e-06	27.1	0.0	1.6	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2795)
zf-C2H2	PF00096.21	gi|408403022|ref|YP_006861005.1|	-	0.00025	21.2	1.5	0.0022	18.2	0.3	2.4	2	0	0	2	2	2	1	Zinc	finger,	C2H2	type
zf-C2H2_6	PF13912.1	gi|408403022|ref|YP_006861005.1|	-	0.00048	19.9	2.3	0.00066	19.4	0.8	1.8	2	0	0	2	2	2	1	C2H2-type	zinc	finger
zf-C2H2_4	PF13894.1	gi|408403022|ref|YP_006861005.1|	-	0.0034	17.6	1.2	0.0055	16.9	0.2	1.8	2	0	0	2	2	2	1	C2H2-type	zinc	finger
zf-C2H2_jaz	PF12171.3	gi|408403022|ref|YP_006861005.1|	-	0.023	14.8	0.6	0.043	13.9	0.4	1.5	1	0	0	1	1	1	0	Zinc-finger	double-stranded	RNA-binding
P-II	PF00543.17	gi|408403023|ref|YP_006861006.1|	-	8.3e-19	67.9	0.1	9.6e-19	67.7	0.0	1.0	1	0	0	1	1	1	1	Nitrogen	regulatory	protein	P-II
DUF3240	PF11582.3	gi|408403023|ref|YP_006861006.1|	-	0.032	14.1	0.0	0.083	12.8	0.0	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3240)
CBS	PF00571.23	gi|408403024|ref|YP_006861007.1|	-	1.8e-28	98.0	2.8	1.1e-13	50.6	0.1	2.3	2	0	0	2	2	2	2	CBS	domain
DUF2795	PF11387.3	gi|408403025|ref|YP_006861008.1|	-	3.8e-10	39.4	0.1	7.2e-10	38.5	0.1	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2795)
PsbI	PF02532.9	gi|408403028|ref|YP_006861011.1|	-	0.033	13.7	0.2	0.045	13.3	0.1	1.2	1	0	0	1	1	1	0	Photosystem	II	reaction	centre	I	protein	(PSII	4.8	kDa	protein)
Filamin	PF00630.14	gi|408403029|ref|YP_006861012.1|	-	0.00082	19.8	0.5	0.0084	16.6	0.1	2.5	1	1	1	2	2	2	1	Filamin/ABP280	repeat
DUF1533	PF07550.6	gi|408403029|ref|YP_006861012.1|	-	0.025	14.5	0.6	0.062	13.2	0.1	2.0	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF1533)
RSD-2	PF07547.8	gi|408403029|ref|YP_006861012.1|	-	0.039	14.0	0.9	0.1	12.7	0.1	2.0	2	0	0	2	2	2	0	RSD-2	N-terminal	domain
DUF326	PF03860.11	gi|408403030|ref|YP_006861013.1|	-	8.6e-16	56.8	59.4	5.5e-05	22.7	9.0	4.2	4	0	0	4	4	4	4	Domain	of	Unknown	Function	(DUF326)
CD20	PF04103.10	gi|408403030|ref|YP_006861013.1|	-	0.094	12.6	4.9	0.076	12.9	2.7	1.3	1	1	0	1	1	1	0	CD20-like	family
23S_rRNA_IVP	PF05635.6	gi|408403030|ref|YP_006861013.1|	-	0.098	12.5	0.2	0.31	10.9	0.1	1.8	1	1	1	2	2	2	0	23S	rRNA-intervening	sequence	protein
MFS_1	PF07690.11	gi|408403031|ref|YP_006861014.1|	-	6.5e-15	54.7	16.8	4e-14	52.0	8.5	2.0	2	0	0	2	2	2	2	Major	Facilitator	Superfamily
MFS_2	PF13347.1	gi|408403031|ref|YP_006861014.1|	-	0.0016	16.9	17.6	0.002	16.6	12.2	1.1	1	0	0	1	1	1	1	MFS/sugar	transport	protein
YrvL	PF14184.1	gi|408403033|ref|YP_006861016.1|	-	0.023	14.5	0.3	0.028	14.2	0.2	1.1	1	0	0	1	1	1	0	Regulatory	protein	YrvL
MFS_1	PF07690.11	gi|408403033|ref|YP_006861016.1|	-	0.029	13.0	1.5	0.03	13.0	1.0	1.0	1	0	0	1	1	1	0	Major	Facilitator	Superfamily
7TMR-DISM_7TM	PF07695.6	gi|408403033|ref|YP_006861016.1|	-	0.032	13.8	0.6	0.037	13.6	0.4	1.0	1	0	0	1	1	1	0	7TM	diverse	intracellular	signalling
DUF2649	PF10854.3	gi|408403033|ref|YP_006861016.1|	-	0.94	9.6	4.9	0.46	10.6	1.5	1.8	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2649)
PrgI	PF12666.2	gi|408403033|ref|YP_006861016.1|	-	1.4	9.1	6.1	3.6	7.8	4.2	1.6	1	1	0	1	1	1	0	PrgI	family	protein
Sigma_reg_N	PF13800.1	gi|408403033|ref|YP_006861016.1|	-	1.8	8.6	4.5	1	9.4	0.3	1.9	1	1	1	2	2	2	0	Sigma	factor	regulator	N-terminal
DUF4212	PF13937.1	gi|408403033|ref|YP_006861016.1|	-	4	7.5	5.2	1.5	8.8	1.0	1.9	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4212)
HTH_24	PF13412.1	gi|408403034|ref|YP_006861017.1|	-	1.7e-10	40.1	0.5	2.7e-08	33.0	0.0	3.0	3	1	1	4	4	4	1	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.2	gi|408403034|ref|YP_006861017.1|	-	6.4e-09	35.4	0.0	2.3e-05	24.0	0.0	2.5	3	0	0	3	3	3	2	Helix-turn-helix	domain
TrmB	PF01978.14	gi|408403034|ref|YP_006861017.1|	-	3.5e-05	23.4	0.0	0.14	11.9	0.0	2.2	2	0	0	2	2	2	2	Sugar-specific	transcriptional	regulator	TrmB
FaeA	PF04703.7	gi|408403034|ref|YP_006861017.1|	-	0.00011	22.2	0.0	0.048	13.8	0.0	2.2	2	0	0	2	2	2	2	FaeA-like	protein
HTH_5	PF01022.15	gi|408403034|ref|YP_006861017.1|	-	0.00015	21.3	0.0	0.0014	18.2	0.0	2.5	2	1	1	3	3	3	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.2	gi|408403034|ref|YP_006861017.1|	-	0.00058	19.4	0.0	0.023	14.3	0.0	2.2	2	0	0	2	2	2	1	MarR	family
HTH_34	PF13601.1	gi|408403034|ref|YP_006861017.1|	-	0.0024	17.8	0.0	0.055	13.5	0.0	2.1	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
Phage_NinH	PF06322.6	gi|408403034|ref|YP_006861017.1|	-	0.009	15.6	0.0	0.028	14.0	0.0	1.7	2	0	0	2	2	2	1	Phage	NinH	protein
HTH_IclR	PF09339.5	gi|408403034|ref|YP_006861017.1|	-	0.0092	15.5	0.0	0.045	13.3	0.0	2.0	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
GntR	PF00392.16	gi|408403034|ref|YP_006861017.1|	-	0.017	14.5	0.0	5.4	6.5	0.0	2.4	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	gntR	family
MarR	PF01047.17	gi|408403034|ref|YP_006861017.1|	-	0.017	14.7	0.0	0.27	10.9	0.0	2.4	3	0	0	3	3	3	0	MarR	family
PaaX	PF07848.7	gi|408403034|ref|YP_006861017.1|	-	0.038	13.9	0.1	12	6.0	0.0	2.4	2	0	0	2	2	2	0	PaaX-like	protein
HTH_41	PF14502.1	gi|408403034|ref|YP_006861017.1|	-	0.05	13.2	0.0	0.097	12.3	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
Exosortase_EpsH	PF09721.5	gi|408403035|ref|YP_006861018.1|	-	0.03	13.5	5.0	0.032	13.4	3.5	1.1	1	0	0	1	1	1	0	Transmembrane	exosortase	(Exosortase_EpsH)
7TM_GPCR_Sri	PF10327.4	gi|408403035|ref|YP_006861018.1|	-	0.036	13.0	1.2	0.048	12.6	0.2	1.6	2	0	0	2	2	2	0	Serpentine	type	7TM	GPCR	chemoreceptor	Sri
DUF4131	PF13567.1	gi|408403035|ref|YP_006861018.1|	-	0.69	9.3	3.2	0.87	8.9	2.2	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4131)
DUF202	PF02656.10	gi|408403035|ref|YP_006861018.1|	-	1.9	8.7	6.6	1.6	9.0	0.8	2.2	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF202)
Sema	PF01403.14	gi|408403036|ref|YP_006861019.1|	-	0.07	11.6	0.1	0.077	11.5	0.1	1.0	1	0	0	1	1	1	0	Sema	domain
Tetraspannin	PF00335.15	gi|408403036|ref|YP_006861019.1|	-	0.1	11.8	0.1	0.11	11.8	0.1	1.1	1	0	0	1	1	1	0	Tetraspanin	family
CbtA	PF09490.5	gi|408403037|ref|YP_006861020.1|	-	0.00025	20.4	0.1	0.00027	20.3	0.1	1.0	1	0	0	1	1	1	1	Probable	cobalt	transporter	subunit	(CbtA)
Cytochrom_D1	PF02239.11	gi|408403039|ref|YP_006861022.1|	-	2.9e-12	45.5	0.0	1.8e-07	29.8	0.0	2.1	1	1	2	3	3	3	3	Cytochrome	D1	heme	domain
Lactonase	PF10282.4	gi|408403039|ref|YP_006861022.1|	-	1.2e-07	31.2	0.0	4.7e-06	25.9	0.0	2.5	1	1	0	1	1	1	1	Lactonase,	7-bladed	beta-propeller
DUF1513	PF07433.6	gi|408403039|ref|YP_006861022.1|	-	0.0015	17.4	0.0	0.028	13.3	0.0	2.2	2	1	1	3	3	3	1	Protein	of	unknown	function	(DUF1513)
FlaG	PF03646.10	gi|408403039|ref|YP_006861022.1|	-	0.0057	16.7	3.5	0.29	11.2	0.0	2.7	3	0	0	3	3	3	2	FlaG	protein
Arylesterase	PF01731.15	gi|408403039|ref|YP_006861022.1|	-	0.0082	16.1	0.0	9.6	6.2	0.0	3.0	2	1	2	4	4	4	2	Arylesterase
PD40	PF07676.7	gi|408403039|ref|YP_006861022.1|	-	0.11	12.1	0.1	23	4.8	0.0	2.6	2	0	0	2	2	2	0	WD40-like	Beta	Propeller	Repeat
DUF4221	PF13970.1	gi|408403039|ref|YP_006861022.1|	-	0.13	11.5	0.0	26	3.9	0.0	2.7	1	1	1	3	3	3	0	Domain	of	unknown	function	(DUF4221)
YHS	PF04945.8	gi|408403041|ref|YP_006861024.1|	-	2.3e-15	56.1	4.1	2.5e-15	56.0	2.8	1.0	1	0	0	1	1	1	1	YHS	domain
ATPase-cat_bd	PF12156.3	gi|408403041|ref|YP_006861024.1|	-	8.8e-05	22.9	1.0	0.00011	22.6	0.7	1.0	1	0	0	1	1	1	1	Putative	metal-binding	domain	of	cation	transport	ATPase
Arc_trans_TRASH	PF08394.5	gi|408403041|ref|YP_006861024.1|	-	0.00012	22.1	2.6	0.00019	21.4	1.8	1.5	1	1	0	1	1	1	1	Archaeal	TRASH	domain
zf-FCS	PF06467.9	gi|408403041|ref|YP_006861024.1|	-	0.027	14.1	1.0	0.035	13.7	0.7	1.3	1	0	0	1	1	1	0	MYM-type	Zinc	finger	with	FCS	sequence	motif
Prok-RING_4	PF14447.1	gi|408403041|ref|YP_006861024.1|	-	0.37	10.3	3.5	2	8.0	1.8	2.0	1	1	1	2	2	2	0	Prokaryotic	RING	finger	family	4
Rad50_zn_hook	PF04423.9	gi|408403041|ref|YP_006861024.1|	-	0.71	9.3	2.4	15	5.1	0.2	2.1	2	0	0	2	2	2	0	Rad50	zinc	hook	motif
DsbD	PF02683.10	gi|408403042|ref|YP_006861025.1|	-	2.2e-11	43.7	12.5	2.2e-11	43.7	8.7	1.9	2	0	0	2	2	2	1	Cytochrome	C	biogenesis	protein	transmembrane	region
DsbD_2	PF13386.1	gi|408403042|ref|YP_006861025.1|	-	6.6e-06	26.0	29.5	1.6e-05	24.7	8.9	2.7	1	1	1	2	2	2	2	Cytochrome	C	biogenesis	protein	transmembrane	region
DUF2561	PF10812.3	gi|408403042|ref|YP_006861025.1|	-	0.25	10.9	2.2	0.77	9.3	0.0	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2561)
tRNA_anti-like	PF12869.2	gi|408403043|ref|YP_006861026.1|	-	0.036	13.5	0.0	0.048	13.1	0.0	1.3	1	0	0	1	1	1	0	tRNA_anti-like
DUF1510	PF07423.6	gi|408403043|ref|YP_006861026.1|	-	0.037	13.4	1.8	0.078	12.3	1.2	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1510)
DUF4366	PF14283.1	gi|408403043|ref|YP_006861026.1|	-	0.044	13.1	1.4	0.045	13.1	0.2	1.5	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4366)
MFS_2	PF13347.1	gi|408403043|ref|YP_006861026.1|	-	0.051	11.9	0.0	0.066	11.6	0.0	1.1	1	0	0	1	1	1	0	MFS/sugar	transport	protein
DUF3357	PF11837.3	gi|408403043|ref|YP_006861026.1|	-	0.059	13.2	0.1	0.16	11.7	0.0	1.6	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3357)
SpoIIIAH	PF12685.2	gi|408403043|ref|YP_006861026.1|	-	0.095	12.1	1.4	0.16	11.4	1.0	1.4	1	1	0	1	1	1	0	SpoIIIAH-like	protein
DUF4134	PF13572.1	gi|408403043|ref|YP_006861026.1|	-	0.12	12.4	0.0	0.23	11.5	0.0	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4134)
Thioredoxin	PF00085.15	gi|408403044|ref|YP_006861027.1|	-	3.4e-25	87.7	0.0	3.8e-25	87.5	0.0	1.0	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_8	PF13905.1	gi|408403044|ref|YP_006861027.1|	-	4.6e-08	33.0	0.1	1.1e-07	31.8	0.0	1.6	1	1	0	1	1	1	1	Thioredoxin-like
Thioredoxin_2	PF13098.1	gi|408403044|ref|YP_006861027.1|	-	7.3e-08	32.5	0.1	2.4e-07	30.9	0.1	1.7	1	1	0	1	1	1	1	Thioredoxin-like	domain
Thioredoxin_3	PF13192.1	gi|408403044|ref|YP_006861027.1|	-	3e-06	26.9	0.0	4.3e-06	26.4	0.0	1.2	1	0	0	1	1	1	1	Thioredoxin	domain
Redoxin	PF08534.5	gi|408403044|ref|YP_006861027.1|	-	8.4e-05	22.1	0.1	0.00018	21.1	0.1	1.5	1	1	1	2	2	2	1	Redoxin
AhpC-TSA	PF00578.16	gi|408403044|ref|YP_006861027.1|	-	0.00015	21.4	0.1	0.0012	18.4	0.1	1.9	1	1	1	2	2	2	1	AhpC/TSA	family
Thioredoxin_9	PF14595.1	gi|408403044|ref|YP_006861027.1|	-	0.00029	20.4	0.0	0.00031	20.3	0.0	1.1	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_7	PF13899.1	gi|408403044|ref|YP_006861027.1|	-	0.00084	19.3	0.1	0.0011	18.9	0.1	1.3	1	0	0	1	1	1	1	Thioredoxin-like
Thioredoxin_6	PF13848.1	gi|408403044|ref|YP_006861027.1|	-	0.0011	18.8	0.0	0.0019	18.0	0.0	1.4	1	1	0	1	1	1	1	Thioredoxin-like	domain
DUF953	PF06110.6	gi|408403044|ref|YP_006861027.1|	-	0.046	13.1	0.1	0.058	12.8	0.0	1.2	1	0	0	1	1	1	0	Eukaryotic	protein	of	unknown	function	(DUF953)
HyaE	PF07449.6	gi|408403044|ref|YP_006861027.1|	-	0.051	13.4	0.0	0.081	12.8	0.0	1.3	1	0	0	1	1	1	0	Hydrogenase-1	expression	protein	HyaE
Glutaredoxin	PF00462.19	gi|408403044|ref|YP_006861027.1|	-	0.069	13.1	0.0	0.1	12.5	0.0	1.3	1	0	0	1	1	1	0	Glutaredoxin
DUF4316	PF14195.1	gi|408403044|ref|YP_006861027.1|	-	0.11	12.5	0.0	0.15	12.1	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4316)
Hormone_4	PF00220.12	gi|408403045|ref|YP_006861028.1|	-	0.18	11.5	3.9	0.47	10.2	2.7	1.8	1	0	0	1	1	1	0	Neurohypophysial	hormones,	N-terminal	Domain
P-II	PF00543.17	gi|408403046|ref|YP_006861029.1|	-	1.2e-17	64.2	0.0	1.4e-17	64.0	0.0	1.0	1	0	0	1	1	1	1	Nitrogen	regulatory	protein	P-II
Cu-oxidase_3	PF07732.10	gi|408403047|ref|YP_006861030.1|	-	3.5e-12	46.0	0.9	7.2e-12	45.0	0.4	1.7	2	0	0	2	2	2	1	Multicopper	oxidase
Cu-oxidase_2	PF07731.9	gi|408403047|ref|YP_006861030.1|	-	7.3e-05	22.2	2.7	0.0096	15.4	0.7	3.7	2	1	0	2	2	2	1	Multicopper	oxidase
Cu-oxidase	PF00394.17	gi|408403047|ref|YP_006861030.1|	-	0.001	18.9	0.0	0.04	13.8	0.0	2.7	2	1	0	2	2	2	1	Multicopper	oxidase
SPW	PF03779.9	gi|408403047|ref|YP_006861030.1|	-	0.05	12.9	0.6	7.4	6.0	0.0	2.6	2	0	0	2	2	2	0	SPW	repeat
DUF4428	PF14471.1	gi|408403048|ref|YP_006861031.1|	-	0.0001	21.9	21.3	0.0079	15.9	0.2	4.5	3	2	0	3	3	3	2	Domain	of	unknown	function	(DUF4428)
C1_1	PF00130.17	gi|408403048|ref|YP_006861031.1|	-	0.0015	18.2	14.4	0.25	11.0	0.5	3.4	2	1	1	3	3	3	3	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
zf-CHY	PF05495.7	gi|408403048|ref|YP_006861031.1|	-	0.0017	18.4	14.9	0.42	10.8	0.5	3.5	1	1	3	4	4	4	2	CHY	zinc	finger
NMD3	PF04981.8	gi|408403048|ref|YP_006861031.1|	-	0.0098	15.0	0.8	0.0098	15.0	0.5	2.3	1	1	2	3	3	3	1	NMD3	family
Cytochrome_C7	PF14522.1	gi|408403048|ref|YP_006861031.1|	-	0.011	15.3	10.4	0.014	14.9	0.8	3.0	1	1	2	3	3	3	0	Cytochrome	c7
LIM	PF00412.17	gi|408403048|ref|YP_006861031.1|	-	0.035	14.1	13.5	0.3	11.2	0.2	4.0	2	1	0	3	3	3	0	LIM	domain
FYVE	PF01363.16	gi|408403048|ref|YP_006861031.1|	-	0.037	13.9	10.8	33	4.4	7.5	2.9	1	1	0	1	1	1	0	FYVE	zinc	finger
DUF678	PF05077.7	gi|408403048|ref|YP_006861031.1|	-	0.055	13.4	4.0	1.8	8.6	0.0	3.1	3	1	0	3	3	3	0	Protein	of	unknown	function	(DUF678)
DZR	PF12773.2	gi|408403048|ref|YP_006861031.1|	-	0.17	11.7	13.8	7.5e+02	0.0	9.6	3.6	1	1	0	1	1	1	0	Double	zinc	ribbon
zf-BED	PF02892.10	gi|408403048|ref|YP_006861031.1|	-	0.28	10.9	0.1	0.28	10.9	0.1	3.6	4	1	1	5	5	5	0	BED	zinc	finger
Yippee-Mis18	PF03226.9	gi|408403048|ref|YP_006861031.1|	-	0.54	10.3	12.2	6.4	6.8	3.7	3.2	1	1	1	2	2	2	0	Yippee	zinc-binding/DNA-binding	/Mis18,	centromere	assembly
Rsm1	PF08600.5	gi|408403048|ref|YP_006861031.1|	-	0.74	9.7	7.8	6.1	6.7	1.0	2.9	2	2	0	2	2	2	0	Rsm1-like
Cytochrom_c3_2	PF14537.1	gi|408403048|ref|YP_006861031.1|	-	1.2	9.4	11.0	1	9.7	4.9	2.6	2	1	0	2	2	2	0	Cytochrome	c3
DUF581	PF04570.9	gi|408403048|ref|YP_006861031.1|	-	1.5	8.1	8.1	19	4.6	0.1	3.6	3	1	0	3	3	3	0	Protein	of	unknown	function	(DUF581)
Cript	PF10235.4	gi|408403048|ref|YP_006861031.1|	-	2.2	8.6	17.2	0.96	9.8	0.8	3.6	2	1	1	3	3	3	0	Microtubule-associated	protein	CRIPT
zf-ribbon_3	PF13248.1	gi|408403048|ref|YP_006861031.1|	-	2.3	7.5	6.9	28	4.0	0.1	3.5	2	1	0	2	2	2	0	zinc-ribbon	domain
HypA	PF01155.14	gi|408403048|ref|YP_006861031.1|	-	6.4	6.5	9.5	1.3	8.7	0.6	2.8	1	1	1	2	2	2	0	Hydrogenase	expression/synthesis	hypA	family
TF_Zn_Ribbon	PF08271.7	gi|408403048|ref|YP_006861031.1|	-	9.1	5.6	11.3	30	4.0	0.8	4.0	2	1	2	4	4	4	0	TFIIB	zinc-binding
DNA_RNApol_7kD	PF03604.8	gi|408403049|ref|YP_006861032.1|	-	3.9e-06	26.2	2.4	6.5e-06	25.5	1.7	1.4	1	1	0	1	1	1	1	DNA	directed	RNA	polymerase,	7	kDa	subunit
zf-Mss51	PF13824.1	gi|408403049|ref|YP_006861032.1|	-	0.088	12.6	0.0	0.15	11.9	0.0	1.4	1	0	0	1	1	1	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
PEP-utilizers_C	PF02896.13	gi|408403050|ref|YP_006861033.1|	-	6.9e-93	310.7	0.8	9.7e-93	310.2	0.6	1.2	1	0	0	1	1	1	1	PEP-utilising	enzyme,	TIM	barrel	domain
PPDK_N	PF01326.14	gi|408403050|ref|YP_006861033.1|	-	8.2e-65	219.0	0.0	5.2e-64	216.3	0.0	2.3	2	1	0	2	2	2	1	Pyruvate	phosphate	dikinase,	PEP/pyruvate	binding	domain
PEP-utilizers	PF00391.18	gi|408403050|ref|YP_006861033.1|	-	8.6e-24	82.9	1.3	1.5e-23	82.1	0.2	1.9	2	0	0	2	2	2	1	PEP-utilising	enzyme,	mobile	domain
HpcH_HpaI	PF03328.9	gi|408403050|ref|YP_006861033.1|	-	0.034	13.0	0.1	0.074	11.9	0.1	1.5	1	0	0	1	1	1	0	HpcH/HpaI	aldolase/citrate	lyase	family
DUF2335	PF10097.4	gi|408403050|ref|YP_006861033.1|	-	1.1	8.9	7.5	1.8	8.2	0.5	3.1	3	0	0	3	3	3	0	Predicted	membrane	protein	(DUF2335)
UPF0126	PF03458.8	gi|408403051|ref|YP_006861034.1|	-	5e-45	151.0	26.6	2.5e-24	84.6	5.0	2.3	2	0	0	2	2	2	2	UPF0126	domain
B12D	PF06522.6	gi|408403051|ref|YP_006861034.1|	-	0.73	9.5	4.6	0.42	10.3	0.1	2.6	2	0	0	2	2	2	0	NADH-ubiquinone	reductase	complex	1	MLRQ	subunit
Response_reg	PF00072.19	gi|408403052|ref|YP_006861035.1|	-	0.0013	18.7	0.0	0.0014	18.5	0.0	1.0	1	0	0	1	1	1	1	Response	regulator	receiver	domain
Response_reg	PF00072.19	gi|408403053|ref|YP_006861036.1|	-	1.5e-05	24.9	0.1	1.6e-05	24.8	0.0	1.0	1	0	0	1	1	1	1	Response	regulator	receiver	domain
Pox_ATPase-GT	PF10640.4	gi|408403053|ref|YP_006861036.1|	-	0.019	13.7	0.0	0.019	13.7	0.0	1.0	1	0	0	1	1	1	0	mRNA	capping	enzyme	N-terminal,	ATPase	and	guanylyltransferase
Lactamase_B_2	PF12706.2	gi|408403054|ref|YP_006861037.1|	-	3.9e-09	36.3	0.1	4.2e-07	29.6	0.2	2.2	2	0	0	2	2	2	2	Beta-lactamase	superfamily	domain
RMMBL	PF07521.7	gi|408403054|ref|YP_006861037.1|	-	0.00035	20.3	0.0	0.0017	18.1	0.0	2.1	2	0	0	2	2	2	1	RNA-metabolising	metallo-beta-lactamase
Lactamase_B_3	PF13483.1	gi|408403054|ref|YP_006861037.1|	-	0.00073	19.2	0.1	0.0036	17.0	0.1	2.0	2	0	0	2	2	2	1	Beta-lactamase	superfamily	domain
DRMBL	PF07522.9	gi|408403054|ref|YP_006861037.1|	-	0.014	15.4	0.0	0.029	14.4	0.0	1.5	1	0	0	1	1	1	0	DNA	repair	metallo-beta-lactamase
Polyoma_coat	PF00718.15	gi|408403057|ref|YP_006861040.1|	-	0.14	11.0	0.0	0.14	11.0	0.0	1.0	1	0	0	1	1	1	0	Polyomavirus	coat	protein
Peptidase_M50	PF02163.17	gi|408403058|ref|YP_006861041.1|	-	0.19	10.6	1.0	0.28	10.0	0.7	1.7	1	1	0	1	1	1	0	Peptidase	family	M50
Peptidase_M50B	PF13398.1	gi|408403058|ref|YP_006861041.1|	-	0.33	10.3	9.4	0.49	9.7	6.5	1.4	1	1	0	1	1	1	0	Peptidase	M50B-like
Formyl_trans_N	PF00551.14	gi|408403059|ref|YP_006861042.1|	-	6.9e-48	162.5	0.0	7.8e-48	162.4	0.0	1.0	1	0	0	1	1	1	1	Formyl	transferase
MFS_1	PF07690.11	gi|408403060|ref|YP_006861043.1|	-	5e-32	110.9	56.5	6.9e-25	87.5	18.7	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
DUF1228	PF06779.9	gi|408403060|ref|YP_006861043.1|	-	0.00011	22.1	1.4	0.00011	22.1	1.0	4.1	4	2	0	4	4	4	1	Protein	of	unknown	function	(DUF1228)
MFS_3	PF05977.8	gi|408403060|ref|YP_006861043.1|	-	1.5	6.8	26.2	1.7	6.6	18.2	1.1	1	0	0	1	1	1	0	Transmembrane	secretion	effector
Ubie_methyltran	PF01209.13	gi|408403061|ref|YP_006861044.1|	-	3.8e-22	78.5	0.0	4.6e-22	78.2	0.0	1.0	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_11	PF08241.7	gi|408403061|ref|YP_006861044.1|	-	2.5e-16	59.9	0.0	3.6e-16	59.4	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|408403061|ref|YP_006861044.1|	-	2.3e-11	43.4	0.0	2.7e-11	43.2	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|408403061|ref|YP_006861044.1|	-	1.6e-10	41.5	0.0	2.7e-10	40.7	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|408403061|ref|YP_006861044.1|	-	3.6e-10	39.7	0.0	4.2e-10	39.5	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|408403061|ref|YP_006861044.1|	-	5.1e-08	33.2	0.0	1.1e-07	32.1	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|408403061|ref|YP_006861044.1|	-	5.7e-08	33.0	0.0	8.6e-08	32.4	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|408403061|ref|YP_006861044.1|	-	7.6e-05	22.7	0.1	0.00016	21.6	0.0	1.5	1	1	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.9	gi|408403061|ref|YP_006861044.1|	-	9e-05	21.9	0.0	0.00014	21.3	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_8	PF05148.10	gi|408403061|ref|YP_006861044.1|	-	0.0062	16.1	0.0	0.0086	15.7	0.0	1.2	1	0	0	1	1	1	1	Hypothetical	methyltransferase
Eno-Rase_NADH_b	PF12242.3	gi|408403061|ref|YP_006861044.1|	-	0.058	13.1	0.0	0.11	12.3	0.0	1.4	1	0	0	1	1	1	0	NAD(P)H	binding	domain	of	trans-2-enoyl-CoA	reductase
DUF87	PF01935.12	gi|408403061|ref|YP_006861044.1|	-	0.059	13.1	0.0	0.34	10.7	0.0	1.9	1	1	1	2	2	2	0	Domain	of	unknown	function	DUF87
DEAD	PF00270.24	gi|408403064|ref|YP_006861047.1|	-	5.4e-33	113.8	0.0	1.2e-32	112.6	0.0	1.6	2	0	0	2	2	2	1	DEAD/DEAH	box	helicase
DUF1998	PF09369.5	gi|408403064|ref|YP_006861047.1|	-	1.2e-12	48.1	0.2	7e-12	45.7	0.1	2.4	3	0	0	3	3	3	1	Domain	of	unknown	function	(DUF1998)
Helicase_C	PF00271.26	gi|408403064|ref|YP_006861047.1|	-	3.7e-12	45.9	1.2	1.3e-09	37.8	0.1	3.0	3	0	0	3	3	3	2	Helicase	conserved	C-terminal	domain
SNF2_N	PF00176.18	gi|408403064|ref|YP_006861047.1|	-	0.011	14.5	0.0	0.018	13.8	0.0	1.2	1	0	0	1	1	1	0	SNF2	family	N-terminal	domain
ResIII	PF04851.10	gi|408403064|ref|YP_006861047.1|	-	0.015	15.1	0.0	0.032	14.0	0.0	1.6	1	0	0	1	1	1	0	Type	III	restriction	enzyme,	res	subunit
zinc_ribbon_5	PF13719.1	gi|408403064|ref|YP_006861047.1|	-	2.2	7.9	10.5	0.095	12.3	1.4	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_4	PF13717.1	gi|408403064|ref|YP_006861047.1|	-	2.2	8.0	10.3	0.12	12.0	1.2	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
Topoisom_I_N	PF02919.10	gi|408403066|ref|YP_006861049.1|	-	2e-65	220.1	2.3	2e-65	220.1	1.6	2.1	2	1	0	2	2	2	1	Eukaryotic	DNA	topoisomerase	I,	DNA	binding	fragment
Topoisom_I	PF01028.15	gi|408403066|ref|YP_006861049.1|	-	9.3e-55	185.2	4.6	9.3e-55	185.2	3.2	1.8	2	0	0	2	2	2	1	Eukaryotic	DNA	topoisomerase	I,	catalytic	core
Topo_C_assoc	PF14370.1	gi|408403066|ref|YP_006861049.1|	-	1.3e-22	79.2	1.0	1.3e-22	79.2	0.7	2.8	3	0	0	3	3	3	1	C-terminal	topoisomerase	domain
DUF106	PF01956.11	gi|408403066|ref|YP_006861049.1|	-	6.1	6.3	11.0	7.3	6.0	1.5	3.0	3	0	0	3	3	3	0	Integral	membrane	protein	DUF106
DUF4398	PF14346.1	gi|408403067|ref|YP_006861050.1|	-	7.1e-06	26.0	12.5	0.051	13.6	6.5	2.4	1	1	1	2	2	2	2	Domain	of	unknown	function	(DUF4398)
MarR_2	PF12802.2	gi|408403067|ref|YP_006861050.1|	-	4.7e-05	22.9	0.0	0.00015	21.3	0.0	1.9	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.14	gi|408403067|ref|YP_006861050.1|	-	0.0012	18.4	0.0	0.0021	17.7	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR	PF01047.17	gi|408403067|ref|YP_006861050.1|	-	0.0066	16.1	0.0	0.013	15.1	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_IclR	PF09339.5	gi|408403067|ref|YP_006861050.1|	-	0.014	14.9	0.0	0.03	13.8	0.0	1.4	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_24	PF13412.1	gi|408403067|ref|YP_006861050.1|	-	0.022	14.1	0.0	0.051	12.9	0.0	1.7	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_27	PF13463.1	gi|408403067|ref|YP_006861050.1|	-	0.035	14.4	0.0	0.076	13.3	0.0	1.6	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
TPR_11	PF13414.1	gi|408403067|ref|YP_006861050.1|	-	0.13	11.8	2.4	0.56	9.8	0.1	2.6	2	1	0	2	2	2	0	TPR	repeat
TFIIE_alpha	PF02002.12	gi|408403067|ref|YP_006861050.1|	-	0.15	11.5	0.1	0.51	9.8	0.0	1.8	2	0	0	2	2	2	0	TFIIE	alpha	subunit
CBS	PF00571.23	gi|408403068|ref|YP_006861051.1|	-	1.5e-16	59.8	4.2	5.5e-08	32.4	0.2	2.3	2	0	0	2	2	2	2	CBS	domain
zf-C2H2_4	PF13894.1	gi|408403068|ref|YP_006861051.1|	-	0.00013	22.0	0.1	0.00035	20.6	0.0	1.8	1	0	0	1	1	1	1	C2H2-type	zinc	finger
zf-C2H2	PF00096.21	gi|408403068|ref|YP_006861051.1|	-	0.002	18.3	0.1	0.0048	17.1	0.1	1.7	1	0	0	1	1	1	1	Zinc	finger,	C2H2	type
zf-Di19	PF05605.7	gi|408403068|ref|YP_006861051.1|	-	0.0057	16.7	0.0	0.015	15.3	0.0	1.8	1	0	0	1	1	1	1	Drought	induced	19	protein	(Di19),	zinc-binding
zf-C2H2_2	PF12756.2	gi|408403068|ref|YP_006861051.1|	-	0.021	14.9	0.0	0.04	14.0	0.0	1.4	1	0	0	1	1	1	0	C2H2	type	zinc-finger	(2	copies)
PyrI_C	PF02748.10	gi|408403068|ref|YP_006861051.1|	-	0.032	13.6	0.1	0.06	12.7	0.1	1.5	1	0	0	1	1	1	0	Aspartate	carbamoyltransferase	regulatory	chain,	metal	binding	domain
Zn_Tnp_IS1595	PF12760.2	gi|408403070|ref|YP_006861053.1|	-	0.00024	20.8	3.4	0.00027	20.6	2.4	1.1	1	0	0	1	1	1	1	Transposase	zinc-ribbon	domain
zinc_ribbon_4	PF13717.1	gi|408403070|ref|YP_006861053.1|	-	0.00033	20.2	3.6	0.00058	19.4	2.5	1.4	1	1	0	1	1	1	1	zinc-ribbon	domain
zinc_ribbon_5	PF13719.1	gi|408403070|ref|YP_006861053.1|	-	0.00038	19.9	3.9	0.00076	19.0	2.7	1.4	1	1	0	1	1	1	1	zinc-ribbon	domain
DUF2387	PF09526.5	gi|408403070|ref|YP_006861053.1|	-	0.0057	16.5	0.2	0.0058	16.5	0.1	1.0	1	0	0	1	1	1	1	Probable	metal-binding	protein	(DUF2387)
FANCL_C	PF11793.3	gi|408403070|ref|YP_006861053.1|	-	0.014	15.3	0.8	0.52	10.3	0.0	2.1	2	0	0	2	2	2	0	FANCL	C-terminal	domain
zf-AN1	PF01428.11	gi|408403070|ref|YP_006861053.1|	-	0.026	14.3	0.7	0.043	13.6	0.5	1.4	1	1	0	1	1	1	0	AN1-like	Zinc	finger
UPF0515	PF15135.1	gi|408403070|ref|YP_006861053.1|	-	0.037	13.1	1.0	0.038	13.0	0.7	1.0	1	0	0	1	1	1	0	Uncharacterised	protein	UPF0515
Rep_fac-A_C	PF08646.5	gi|408403070|ref|YP_006861053.1|	-	0.047	13.4	0.4	0.053	13.2	0.3	1.0	1	0	0	1	1	1	0	Replication	factor-A	C	terminal	domain
PhnA_Zn_Ribbon	PF08274.7	gi|408403070|ref|YP_006861053.1|	-	0.049	13.4	0.1	0.064	13.0	0.1	1.2	1	0	0	1	1	1	0	PhnA	Zinc-Ribbon
zf-TFIIB	PF13453.1	gi|408403070|ref|YP_006861053.1|	-	0.054	12.7	1.6	0.075	12.2	1.1	1.2	1	0	0	1	1	1	0	Transcription	factor	zinc-finger
Elf1	PF05129.8	gi|408403070|ref|YP_006861053.1|	-	0.059	13.0	0.2	0.08	12.6	0.2	1.2	1	0	0	1	1	1	0	Transcription	elongation	factor	Elf1	like
DZR	PF12773.2	gi|408403070|ref|YP_006861053.1|	-	0.087	12.6	2.6	0.13	12.1	1.8	1.3	1	1	0	1	1	1	0	Double	zinc	ribbon
zf-RING_4	PF14570.1	gi|408403070|ref|YP_006861053.1|	-	0.097	12.2	3.3	0.96	9.0	0.3	2.1	2	0	0	2	2	2	0	RING/Ubox	like	zinc-binding	domain
CpXC	PF14353.1	gi|408403070|ref|YP_006861053.1|	-	0.12	12.3	1.9	3.8	7.4	0.1	2.0	2	0	0	2	2	2	0	CpXC	protein
Prim_Zn_Ribbon	PF08273.7	gi|408403070|ref|YP_006861053.1|	-	0.14	12.2	1.3	0.15	12.1	0.9	1.1	1	0	0	1	1	1	0	Zinc-binding	domain	of	primase-helicase
TF_Zn_Ribbon	PF08271.7	gi|408403070|ref|YP_006861053.1|	-	0.17	11.2	2.2	0.28	10.5	1.5	1.4	1	1	0	1	1	1	0	TFIIB	zinc-binding
Zn-ribbon_8	PF09723.5	gi|408403070|ref|YP_006861053.1|	-	0.18	11.7	4.4	5.1	7.1	0.1	2.1	2	0	0	2	2	2	0	Zinc	ribbon	domain
zinc-ribbons_6	PF07191.7	gi|408403070|ref|YP_006861053.1|	-	0.21	11.3	2.0	0.31	10.8	1.4	1.3	1	1	0	1	1	1	0	zinc-ribbons
zf-Mss51	PF13824.1	gi|408403070|ref|YP_006861053.1|	-	0.22	11.4	1.6	0.27	11.1	1.1	1.1	1	0	0	1	1	1	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
C1_4	PF07975.7	gi|408403070|ref|YP_006861053.1|	-	0.27	11.2	3.7	2.2	8.3	2.7	1.9	1	1	1	2	2	2	0	TFIIH	C1-like	domain
zinc_ribbon_2	PF13240.1	gi|408403070|ref|YP_006861053.1|	-	0.29	10.6	3.1	1	8.9	0.1	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.6	gi|408403070|ref|YP_006861053.1|	-	0.34	10.6	1.6	0.44	10.2	1.1	1.1	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
DUF4182	PF13790.1	gi|408403070|ref|YP_006861053.1|	-	0.35	10.6	2.5	0.37	10.6	0.1	1.9	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4182)
HypA	PF01155.14	gi|408403070|ref|YP_006861053.1|	-	0.41	10.3	2.1	8.4	6.1	0.1	1.8	1	1	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
TFIIS_C	PF01096.13	gi|408403070|ref|YP_006861053.1|	-	0.61	9.7	4.5	8.6	6.0	0.3	2.1	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
zf-RING_5	PF14634.1	gi|408403070|ref|YP_006861053.1|	-	0.65	9.7	4.5	2.2	8.0	3.4	1.6	1	1	1	2	2	2	0	zinc-RING	finger	domain
DUF2296	PF10058.4	gi|408403070|ref|YP_006861053.1|	-	0.9	9.3	4.7	4.1	7.2	0.3	2.1	1	1	0	2	2	2	0	Predicted	integral	membrane	metal-binding	protein	(DUF2296)
Zn_Tnp_IS1	PF03811.8	gi|408403070|ref|YP_006861053.1|	-	0.97	8.9	6.8	4.7	6.7	4.7	1.9	1	1	0	1	1	1	0	InsA	N-terminal	domain
Mu-like_Com	PF10122.4	gi|408403070|ref|YP_006861053.1|	-	0.99	8.5	6.5	0.75	8.9	0.3	2.1	1	1	1	2	2	2	0	Mu-like	prophage	protein	Com
zf-FPG_IleRS	PF06827.9	gi|408403070|ref|YP_006861053.1|	-	2.7	7.7	5.6	14	5.4	3.9	1.9	1	1	0	1	1	1	0	Zinc	finger	found	in	FPG	and	IleRS
zf-HIT	PF04438.11	gi|408403070|ref|YP_006861053.1|	-	7.5	6.2	7.4	14	5.4	1.5	2.1	2	0	0	2	2	2	0	HIT	zinc	finger
Lyase_1	PF00206.15	gi|408403071|ref|YP_006861054.1|	-	5.6e-47	160.4	0.6	5.6e-47	160.4	0.4	2.1	2	1	0	2	2	2	1	Lyase
ADSL_C	PF10397.4	gi|408403071|ref|YP_006861054.1|	-	6.6e-20	70.9	0.2	1.6e-19	69.6	0.2	1.7	1	0	0	1	1	1	1	Adenylosuccinate	lyase	C-terminus
PEP-utilisers_N	PF05524.8	gi|408403071|ref|YP_006861054.1|	-	1	9.1	8.1	0.48	10.2	0.9	3.1	2	1	0	2	2	2	0	PEP-utilising	enzyme,	N-terminal
RtcB	PF01139.12	gi|408403072|ref|YP_006861055.1|	-	2.5e-149	497.8	0.0	2.8e-149	497.6	0.0	1.0	1	0	0	1	1	1	1	tRNA-splicing	ligase	RtcB
DUF993	PF06187.6	gi|408403072|ref|YP_006861055.1|	-	0.017	13.6	0.0	0.026	13.0	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF993)
dsDNA_bind	PF01984.15	gi|408403073|ref|YP_006861056.1|	-	0.00044	20.1	0.1	0.0006	19.7	0.1	1.2	1	0	0	1	1	1	1	Double-stranded	DNA-binding	domain
DUF4467	PF14729.1	gi|408403073|ref|YP_006861056.1|	-	0.019	15.2	0.9	3.4	8.0	0.1	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	with	cystatin-like	fold	(DUF4467)
Methyltransf_11	PF08241.7	gi|408403077|ref|YP_006861060.1|	-	1.1e-10	41.8	0.0	1.4e-10	41.4	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.13	gi|408403077|ref|YP_006861060.1|	-	1.6e-09	37.2	0.0	1.9e-09	37.0	0.0	1.0	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_25	PF13649.1	gi|408403077|ref|YP_006861060.1|	-	9.9e-08	32.2	0.0	1.3e-07	31.8	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|408403077|ref|YP_006861060.1|	-	5.1e-07	29.3	0.0	5.9e-07	29.1	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|408403077|ref|YP_006861060.1|	-	1.7e-05	25.3	0.0	2.2e-05	25.0	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|408403077|ref|YP_006861060.1|	-	1.9e-05	24.6	0.0	2.4e-05	24.3	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.9	gi|408403077|ref|YP_006861060.1|	-	0.00016	21.0	0.0	0.00018	20.9	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_23	PF13489.1	gi|408403077|ref|YP_006861060.1|	-	0.0014	18.3	0.0	0.0016	18.1	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|408403077|ref|YP_006861060.1|	-	0.0019	18.5	0.0	0.0023	18.3	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
RrnaAD	PF00398.15	gi|408403077|ref|YP_006861060.1|	-	0.013	14.5	0.0	0.016	14.2	0.0	1.0	1	0	0	1	1	1	0	Ribosomal	RNA	adenine	dimethylase
Methyltransf_32	PF13679.1	gi|408403077|ref|YP_006861060.1|	-	0.025	14.2	0.0	0.03	14.0	0.0	1.1	1	0	0	1	1	1	0	Methyltransferase	domain
MetW	PF07021.7	gi|408403077|ref|YP_006861060.1|	-	0.028	13.7	0.0	0.039	13.3	0.0	1.3	1	1	0	1	1	1	0	Methionine	biosynthesis	protein	MetW
PCMT	PF01135.14	gi|408403077|ref|YP_006861060.1|	-	0.042	13.3	0.0	0.046	13.2	0.0	1.1	1	0	0	1	1	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
PrmA	PF06325.8	gi|408403077|ref|YP_006861060.1|	-	0.044	12.9	0.0	0.05	12.7	0.0	1.1	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
Ribosomal_S11	PF00411.14	gi|408403078|ref|YP_006861061.1|	-	1.7e-39	134.3	0.2	2e-39	134.1	0.1	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S11
AIRS	PF00586.19	gi|408403079|ref|YP_006861062.1|	-	2e-14	53.5	0.1	5.6e-14	52.1	0.0	1.7	1	0	0	1	1	1	1	AIR	synthase	related	protein,	N-terminal	domain
AIRS_C	PF02769.17	gi|408403079|ref|YP_006861062.1|	-	9.2e-06	25.7	0.1	1.6e-05	24.9	0.1	1.3	1	0	0	1	1	1	1	AIR	synthase	related	protein,	C-terminal	domain
PGM_PMM_I	PF02878.11	gi|408403080|ref|YP_006861063.1|	-	4.8e-26	90.8	0.1	1.1e-25	89.6	0.0	1.7	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	I
PGM_PMM_III	PF02880.11	gi|408403080|ref|YP_006861063.1|	-	8.1e-16	58.0	0.1	2e-15	56.7	0.0	1.7	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	III
PGM_PMM_II	PF02879.11	gi|408403080|ref|YP_006861063.1|	-	5.4e-13	49.1	0.2	1.1e-12	48.1	0.1	1.5	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	II
PGM_PMM_IV	PF00408.15	gi|408403080|ref|YP_006861063.1|	-	5.2e-08	32.7	0.1	1.4e-07	31.3	0.0	1.7	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	C-terminal	domain
HTH_OrfB_IS605	PF12323.3	gi|408403081|ref|YP_006861064.1|	-	2.1e-07	30.1	0.0	4.5e-07	29.0	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
Peptidase_M43	PF05572.8	gi|408403084|ref|YP_006861067.1|	-	0.0079	15.8	0.2	0.017	14.7	0.1	1.6	1	1	0	1	1	1	1	Pregnancy-associated	plasma	protein-A
Reprolysin_3	PF13582.1	gi|408403084|ref|YP_006861067.1|	-	0.13	12.8	0.0	0.17	12.4	0.0	1.4	1	1	0	1	1	1	0	Metallo-peptidase	family	M12B	Reprolysin-like
Peptidase_M10	PF00413.19	gi|408403084|ref|YP_006861067.1|	-	0.14	11.9	0.1	0.29	10.8	0.0	1.4	1	1	0	1	1	1	0	Matrixin
HTH_20	PF12840.2	gi|408403085|ref|YP_006861068.1|	-	0.0029	17.3	0.0	0.0041	16.9	0.0	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
HxlR	PF01638.12	gi|408403085|ref|YP_006861068.1|	-	0.049	13.2	0.0	0.062	12.9	0.0	1.3	1	0	0	1	1	1	0	HxlR-like	helix-turn-helix
DUF488	PF04343.8	gi|408403086|ref|YP_006861069.1|	-	0.018	15.3	0.0	0.02	15.2	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF488
Acetyltransf_7	PF13508.1	gi|408403087|ref|YP_006861070.1|	-	0.0035	17.4	0.3	0.0053	16.8	0.2	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.19	gi|408403087|ref|YP_006861070.1|	-	0.039	13.9	0.0	0.058	13.4	0.0	1.4	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	family
Baculo_VP91_N	PF08475.5	gi|408403087|ref|YP_006861070.1|	-	0.11	11.8	0.1	0.14	11.4	0.0	1.2	1	0	0	1	1	1	0	Viral	capsid	protein	91	N-terminal
PRESAN	PF09687.5	gi|408403093|ref|YP_006861076.1|	-	2.1	8.4	5.9	22	5.1	3.9	2.0	1	1	0	1	1	1	0	Plasmodium	RESA	N-terminal
MEDS	PF14417.1	gi|408403094|ref|YP_006861077.1|	-	0.0067	15.5	0.0	0.012	14.7	0.0	1.4	1	0	0	1	1	1	1	MEDS:	MEthanogen/methylotroph,	DcmR	Sensory	domain
KaiC	PF06745.8	gi|408403094|ref|YP_006861077.1|	-	0.0096	15.0	0.1	0.022	13.8	0.0	1.5	2	0	0	2	2	2	1	KaiC
MEDS	PF14417.1	gi|408403095|ref|YP_006861078.1|	-	1.1e-06	27.9	0.0	1.2e-06	27.7	0.0	1.1	1	0	0	1	1	1	1	MEDS:	MEthanogen/methylotroph,	DcmR	Sensory	domain
KaiC	PF06745.8	gi|408403095|ref|YP_006861078.1|	-	0.00093	18.3	0.0	0.0011	18.0	0.0	1.1	1	0	0	1	1	1	1	KaiC
DapB_C	PF05173.9	gi|408403095|ref|YP_006861078.1|	-	0.12	12.1	0.0	0.18	11.5	0.0	1.3	1	0	0	1	1	1	0	Dihydrodipicolinate	reductase,	C-terminus
DUF2823	PF11034.3	gi|408403097|ref|YP_006861080.1|	-	0.072	13.2	0.1	0.12	12.5	0.0	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2823)
DUF1934	PF09148.5	gi|408403097|ref|YP_006861080.1|	-	0.081	12.6	0.3	0.52	10.0	0.0	1.8	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF1934)
Endotoxin_mid	PF09131.5	gi|408403098|ref|YP_006861081.1|	-	0.06	12.8	0.6	0.092	12.1	0.1	1.5	2	0	0	2	2	2	0	Bacillus	thuringiensis	delta-Endotoxin,	middle	domain
DUF1401	PF07180.6	gi|408403098|ref|YP_006861081.1|	-	0.16	11.7	0.0	0.3	10.8	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1401)
TM2	PF05154.11	gi|408403099|ref|YP_006861082.1|	-	2.7e-05	24.2	6.0	2.7e-05	24.2	4.2	2.2	2	0	0	2	2	2	1	TM2	domain
DUF4418	PF14387.1	gi|408403099|ref|YP_006861082.1|	-	0.018	14.7	0.9	0.023	14.4	0.6	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4418)
Abi	PF02517.11	gi|408403099|ref|YP_006861082.1|	-	0.3	11.2	3.6	0.53	10.4	2.5	1.5	1	1	0	1	1	1	0	CAAX	protease	self-immunity
DUF4307	PF14155.1	gi|408403099|ref|YP_006861082.1|	-	0.47	10.2	2.3	0.74	9.6	0.0	2.2	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF4307)
DUF1206	PF06724.6	gi|408403099|ref|YP_006861082.1|	-	0.71	9.6	12.8	0.2	11.4	3.9	2.6	1	1	1	2	2	2	0	Domain	of	Unknown	Function	(DUF1206)
Med11	PF10280.4	gi|408403100|ref|YP_006861083.1|	-	0.028	14.4	0.2	0.062	13.3	0.1	1.7	1	1	0	1	1	1	0	Mediator	complex	protein
PRTase_1	PF11202.3	gi|408403100|ref|YP_006861083.1|	-	0.063	12.2	1.4	0.69	8.8	0.2	1.9	1	1	1	2	2	2	0	Phosphoribosyl	transferase	(PRTase)
CitMHS	PF03600.11	gi|408403101|ref|YP_006861084.1|	-	3.8e-33	114.5	35.7	3.8e-33	114.5	24.7	2.0	1	1	1	2	2	2	2	Citrate	transporter
ADH_N	PF08240.7	gi|408403102|ref|YP_006861085.1|	-	2e-32	111.1	1.4	3.6e-32	110.3	1.0	1.5	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.21	gi|408403102|ref|YP_006861085.1|	-	3.1e-20	72.0	0.7	7e-20	70.8	0.4	1.7	1	1	0	1	1	1	1	Zinc-binding	dehydrogenase
2-Hacid_dh_C	PF02826.14	gi|408403102|ref|YP_006861085.1|	-	2.4e-05	23.5	0.2	4.5e-05	22.6	0.2	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
ELFV_dehydrog	PF00208.16	gi|408403102|ref|YP_006861085.1|	-	0.0065	16.0	1.2	0.0092	15.5	0.3	1.6	1	1	1	2	2	2	1	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
AP_endonuc_2	PF01261.19	gi|408403102|ref|YP_006861085.1|	-	0.0066	15.7	0.0	0.029	13.6	0.0	1.9	1	1	0	1	1	1	1	Xylose	isomerase-like	TIM	barrel
AlaDh_PNT_C	PF01262.16	gi|408403102|ref|YP_006861085.1|	-	0.023	14.2	0.2	0.052	13.1	0.2	1.6	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
DAP_epimerase	PF01678.14	gi|408403102|ref|YP_006861085.1|	-	0.064	13.1	0.0	0.14	12.1	0.0	1.5	1	0	0	1	1	1	0	Diaminopimelate	epimerase
NUDIX	PF00293.23	gi|408403103|ref|YP_006861086.1|	-	2e-20	72.7	0.0	2.7e-20	72.3	0.0	1.1	1	0	0	1	1	1	1	NUDIX	domain
TrmB	PF01978.14	gi|408403105|ref|YP_006861088.1|	-	0.0017	18.0	0.6	0.0031	17.1	0.4	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
LexA_DNA_bind	PF01726.11	gi|408403105|ref|YP_006861088.1|	-	0.026	14.0	0.0	0.045	13.2	0.0	1.3	1	0	0	1	1	1	0	LexA	DNA	binding	domain
HTH_27	PF13463.1	gi|408403105|ref|YP_006861088.1|	-	0.12	12.7	0.0	0.22	11.8	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
DUF4181	PF13789.1	gi|408403105|ref|YP_006861088.1|	-	7.3	6.5	6.7	0.56	10.1	1.3	1.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4181)
DUF2443	PF10398.4	gi|408403107|ref|YP_006861090.1|	-	0.09	12.5	0.0	0.14	11.9	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2443)
DUF2127	PF09900.4	gi|408403107|ref|YP_006861090.1|	-	0.32	11.0	16.0	1.3	9.0	4.2	2.1	2	0	0	2	2	2	0	Predicted	membrane	protein	(DUF2127)
Pox_P21	PF05313.7	gi|408403107|ref|YP_006861090.1|	-	0.71	9.1	8.2	0.25	10.6	0.9	2.0	2	0	0	2	2	2	0	Poxvirus	P21	membrane	protein
Tetraspannin	PF00335.15	gi|408403107|ref|YP_006861090.1|	-	2.9	7.1	16.0	3.8	6.7	11.1	1.2	1	0	0	1	1	1	0	Tetraspanin	family
Phageshock_PspG	PF09583.5	gi|408403107|ref|YP_006861090.1|	-	7	6.7	24.1	0.28	11.2	3.1	3.1	3	0	0	3	3	3	0	Phage	shock	protein	G	(Phageshock_PspG)
tRNA-synt_2	PF00152.15	gi|408403108|ref|YP_006861091.1|	-	1.2e-77	260.9	0.0	1.4e-77	260.7	0.0	1.0	1	0	0	1	1	1	1	tRNA	synthetases	class	II	(D,	K	and	N)
tRNA_anti-codon	PF01336.20	gi|408403108|ref|YP_006861091.1|	-	3.5e-09	36.3	0.3	8.4e-09	35.1	0.2	1.7	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
tRNA_anti-like	PF12869.2	gi|408403108|ref|YP_006861091.1|	-	0.0064	15.9	0.1	0.012	15.0	0.1	1.4	1	0	0	1	1	1	1	tRNA_anti-like
tRNA-synt_2d	PF01409.15	gi|408403108|ref|YP_006861091.1|	-	0.014	14.6	0.0	1.3	8.1	0.0	2.9	3	0	0	3	3	3	0	tRNA	synthetases	class	II	core	domain	(F)
Alba	PF01918.16	gi|408403109|ref|YP_006861092.1|	-	0.0015	18.0	0.2	0.0028	17.2	0.2	1.4	1	0	0	1	1	1	1	Alba
S-methyl_trans	PF02574.11	gi|408403110|ref|YP_006861093.1|	-	6.3e-73	245.7	0.0	7.2e-73	245.5	0.0	1.0	1	0	0	1	1	1	1	Homocysteine	S-methyltransferase
PaaX	PF07848.7	gi|408403111|ref|YP_006861094.1|	-	0.003	17.5	0.1	0.0051	16.7	0.1	1.4	1	1	0	1	1	1	1	PaaX-like	protein
SnoaL	PF07366.7	gi|408403112|ref|YP_006861095.1|	-	1.8e-30	105.1	0.0	2.1e-30	104.8	0.0	1.1	1	0	0	1	1	1	1	SnoaL-like	polyketide	cyclase
SnoaL_2	PF12680.2	gi|408403112|ref|YP_006861095.1|	-	1.3e-16	60.8	0.1	1.6e-16	60.5	0.1	1.1	1	0	0	1	1	1	1	SnoaL-like	domain
GATase_7	PF13537.1	gi|408403112|ref|YP_006861095.1|	-	0.11	12.2	0.0	3.9	7.2	0.0	2.1	1	1	1	2	2	2	0	Glutamine	amidotransferase	domain
Pterin_bind	PF00809.17	gi|408403113|ref|YP_006861096.1|	-	8.8e-26	90.5	0.0	3.1e-25	88.8	0.0	1.9	2	0	0	2	2	2	1	Pterin	binding	enzyme
Met_synt_B12	PF02965.12	gi|408403113|ref|YP_006861096.1|	-	1.6e-19	69.9	0.0	3.3e-19	68.9	0.0	1.6	1	0	0	1	1	1	1	Vitamin	B12	dependent	methionine	synthase,	activation	domain
B12-binding	PF02310.14	gi|408403113|ref|YP_006861096.1|	-	8.1e-18	64.4	0.0	1.7e-17	63.3	0.0	1.6	1	0	0	1	1	1	1	B12	binding	domain
B12-binding_2	PF02607.12	gi|408403113|ref|YP_006861096.1|	-	1.1e-16	60.5	0.8	3.8e-16	58.8	0.5	2.0	1	1	0	1	1	1	1	B12	binding	domain
CdhD	PF03599.11	gi|408403113|ref|YP_006861096.1|	-	0.00058	18.4	0.0	0.0011	17.5	0.0	1.4	1	0	0	1	1	1	1	CO	dehydrogenase/acetyl-CoA	synthase	delta	subunit
DUF2922	PF11148.3	gi|408403113|ref|YP_006861096.1|	-	0.088	12.4	0.1	1.1	8.9	0.0	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2922)
CtaG_Cox11	PF04442.9	gi|408403115|ref|YP_006861098.1|	-	0.021	14.6	0.0	0.036	13.8	0.0	1.3	1	0	0	1	1	1	0	Cytochrome	c	oxidase	assembly	protein	CtaG/Cox11
Cupredoxin_1	PF13473.1	gi|408403115|ref|YP_006861098.1|	-	0.064	13.1	0.1	0.11	12.3	0.1	1.4	1	0	0	1	1	1	0	Cupredoxin-like	domain
TraK	PF06586.6	gi|408403115|ref|YP_006861098.1|	-	0.084	11.9	0.3	0.11	11.6	0.2	1.1	1	0	0	1	1	1	0	TraK	protein
DUF4307	PF14155.1	gi|408403115|ref|YP_006861098.1|	-	0.2	11.4	2.3	0.53	10.0	0.4	2.1	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4307)
Talin_middle	PF09141.5	gi|408403116|ref|YP_006861099.1|	-	0.021	14.4	1.2	0.026	14.2	0.8	1.1	1	0	0	1	1	1	0	Talin,	middle	domain
DUF3373	PF11853.3	gi|408403116|ref|YP_006861099.1|	-	0.027	13.0	0.5	0.033	12.7	0.4	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3373)
Peptidase_S49_N	PF08496.5	gi|408403116|ref|YP_006861099.1|	-	0.028	14.1	0.8	0.034	13.9	0.6	1.2	1	0	0	1	1	1	0	Peptidase	family	S49	N-terminal
TACC	PF05010.9	gi|408403116|ref|YP_006861099.1|	-	0.041	13.6	0.4	0.047	13.4	0.3	1.1	1	0	0	1	1	1	0	Transforming	acidic	coiled-coil-containing	protein	(TACC)
NPV_P10	PF05531.7	gi|408403116|ref|YP_006861099.1|	-	0.045	13.9	0.4	0.084	13.1	0.1	1.6	2	0	0	2	2	2	0	Nucleopolyhedrovirus	P10	protein
I_LWEQ	PF01608.12	gi|408403116|ref|YP_006861099.1|	-	0.054	13.4	2.8	0.065	13.1	1.9	1.1	1	0	0	1	1	1	0	I/LWEQ	domain
Tropomyosin_1	PF12718.2	gi|408403116|ref|YP_006861099.1|	-	0.065	13.0	0.2	0.065	13.0	0.1	1.4	2	0	0	2	2	2	0	Tropomyosin	like
DUF1804	PF08822.6	gi|408403116|ref|YP_006861099.1|	-	0.072	12.8	1.6	0.82	9.3	0.1	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1804)
FlxA	PF14282.1	gi|408403116|ref|YP_006861099.1|	-	0.78	9.7	4.8	0.44	10.5	1.5	1.8	2	0	0	2	2	2	0	FlxA-like	protein
Omega_Repress	PF07764.6	gi|408403120|ref|YP_006861103.1|	-	0.025	14.9	0.1	0.047	14.0	0.0	1.5	1	1	1	2	2	2	0	Omega	Transcriptional	Repressor
CcdA	PF07362.7	gi|408403120|ref|YP_006861103.1|	-	0.072	12.9	0.0	0.092	12.6	0.0	1.2	1	0	0	1	1	1	0	Post-segregation	antitoxin	CcdA
DDE_Tnp_IS240	PF13610.1	gi|408403121|ref|YP_006861104.1|	-	5.4e-20	71.7	0.0	9.7e-20	70.9	0.0	1.4	1	0	0	1	1	1	1	DDE	domain
rve	PF00665.21	gi|408403121|ref|YP_006861104.1|	-	8.2e-08	32.3	0.0	1.6e-07	31.4	0.0	1.5	1	0	0	1	1	1	1	Integrase	core	domain
rve_3	PF13683.1	gi|408403121|ref|YP_006861104.1|	-	3.9e-06	26.2	0.0	9.8e-06	25.0	0.0	1.7	1	0	0	1	1	1	1	Integrase	core	domain
SWIM	PF04434.12	gi|408403121|ref|YP_006861104.1|	-	0.00045	19.6	0.3	0.001	18.4	0.2	1.6	1	0	0	1	1	1	1	SWIM	zinc	finger
Transposase_mut	PF00872.13	gi|408403121|ref|YP_006861104.1|	-	0.0078	14.8	0.2	1.3	7.4	0.1	2.1	2	0	0	2	2	2	2	Transposase,	Mutator	family
Zn_Tnp_IS1595	PF12760.2	gi|408403121|ref|YP_006861104.1|	-	0.014	15.2	1.1	0.033	13.9	0.8	1.6	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
HTH_28	PF13518.1	gi|408403121|ref|YP_006861104.1|	-	0.076	13.0	0.1	0.19	11.7	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
Terminase_5	PF06056.7	gi|408403121|ref|YP_006861104.1|	-	0.094	12.2	0.1	0.25	10.9	0.0	1.6	1	0	0	1	1	1	0	Putative	ATPase	subunit	of	terminase	(gpP-like)
DUF1469	PF07332.6	gi|408403123|ref|YP_006861106.1|	-	0.88	9.3	4.9	1.6	8.4	0.2	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1469)
IncA	PF04156.9	gi|408403123|ref|YP_006861106.1|	-	2.6	7.6	4.7	3.3	7.2	0.8	2.0	2	0	0	2	2	2	0	IncA	protein
ABC_tran	PF00005.22	gi|408403124|ref|YP_006861107.1|	-	2.6e-33	115.2	0.0	4.2e-33	114.5	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|408403124|ref|YP_006861107.1|	-	8.9e-09	35.7	0.0	0.0014	18.6	0.0	2.2	1	1	1	2	2	2	2	AAA	domain
DUF258	PF03193.11	gi|408403124|ref|YP_006861107.1|	-	3.6e-05	23.0	0.0	5.3e-05	22.4	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
SMC_N	PF02463.14	gi|408403124|ref|YP_006861107.1|	-	0.00036	19.8	0.7	0.1	11.7	0.0	2.2	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_15	PF13175.1	gi|408403124|ref|YP_006861107.1|	-	0.00042	19.4	0.0	0.46	9.4	0.0	2.2	1	1	0	2	2	2	2	AAA	ATPase	domain
AAA_16	PF13191.1	gi|408403124|ref|YP_006861107.1|	-	0.00046	20.2	0.0	0.0011	18.9	0.0	1.7	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA	PF00004.24	gi|408403124|ref|YP_006861107.1|	-	0.0007	19.8	0.3	0.0062	16.7	0.2	2.2	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_17	PF13207.1	gi|408403124|ref|YP_006861107.1|	-	0.0015	19.3	0.2	0.0023	18.7	0.1	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_25	PF13481.1	gi|408403124|ref|YP_006861107.1|	-	0.0021	17.5	0.0	0.0034	16.7	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
RNA_helicase	PF00910.17	gi|408403124|ref|YP_006861107.1|	-	0.0022	18.1	0.0	0.1	12.7	0.0	2.5	2	0	0	2	2	2	1	RNA	helicase
AAA_22	PF13401.1	gi|408403124|ref|YP_006861107.1|	-	0.0053	16.9	0.1	0.0097	16.0	0.0	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_18	PF13238.1	gi|408403124|ref|YP_006861107.1|	-	0.0058	16.9	0.3	0.013	15.7	0.1	1.8	2	1	0	2	2	1	1	AAA	domain
IstB_IS21	PF01695.12	gi|408403124|ref|YP_006861107.1|	-	0.0058	16.0	0.2	0.025	14.0	0.0	2.0	2	0	0	2	2	2	1	IstB-like	ATP	binding	protein
Rad17	PF03215.10	gi|408403124|ref|YP_006861107.1|	-	0.0082	14.8	0.0	0.012	14.3	0.0	1.2	1	0	0	1	1	1	1	Rad17	cell	cycle	checkpoint	protein
ABC_ATPase	PF09818.4	gi|408403124|ref|YP_006861107.1|	-	0.012	14.1	0.5	0.061	11.9	0.0	1.9	2	0	0	2	2	2	0	Predicted	ATPase	of	the	ABC	class
NACHT	PF05729.7	gi|408403124|ref|YP_006861107.1|	-	0.015	14.9	0.0	0.027	14.1	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
AAA_28	PF13521.1	gi|408403124|ref|YP_006861107.1|	-	0.015	15.2	0.1	0.021	14.8	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
AAA_33	PF13671.1	gi|408403124|ref|YP_006861107.1|	-	0.019	14.8	0.0	0.038	13.8	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_5	PF07728.9	gi|408403124|ref|YP_006861107.1|	-	0.022	14.4	0.0	0.052	13.2	0.0	1.6	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
Miro	PF08477.8	gi|408403124|ref|YP_006861107.1|	-	0.029	14.8	0.0	0.064	13.7	0.0	1.6	1	1	0	1	1	1	0	Miro-like	protein
AAA_29	PF13555.1	gi|408403124|ref|YP_006861107.1|	-	0.035	13.6	0.0	0.076	12.5	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
UPF0079	PF02367.12	gi|408403124|ref|YP_006861107.1|	-	0.048	13.2	0.1	0.091	12.3	0.0	1.4	1	0	0	1	1	1	0	Uncharacterised	P-loop	hydrolase	UPF0079
AAA_23	PF13476.1	gi|408403124|ref|YP_006861107.1|	-	0.048	13.9	0.4	0.087	13.1	0.3	1.3	1	0	0	1	1	1	0	AAA	domain
PhoH	PF02562.11	gi|408403124|ref|YP_006861107.1|	-	0.058	12.6	0.1	0.46	9.6	0.0	2.1	2	0	0	2	2	2	0	PhoH-like	protein
ATP-synt_ab	PF00006.20	gi|408403124|ref|YP_006861107.1|	-	0.079	12.4	0.0	0.13	11.7	0.0	1.3	1	0	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
AAA_14	PF13173.1	gi|408403124|ref|YP_006861107.1|	-	0.086	12.7	0.0	0.21	11.4	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
MMR_HSR1	PF01926.18	gi|408403124|ref|YP_006861107.1|	-	0.088	12.7	0.2	0.22	11.5	0.1	2.0	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
SbcCD_C	PF13558.1	gi|408403124|ref|YP_006861107.1|	-	0.089	12.7	0.4	0.38	10.6	0.3	1.9	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
AAA_24	PF13479.1	gi|408403124|ref|YP_006861107.1|	-	0.096	12.2	0.3	0.51	9.8	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
AAA_30	PF13604.1	gi|408403124|ref|YP_006861107.1|	-	0.11	12.0	0.0	0.22	11.0	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
Arch_ATPase	PF01637.13	gi|408403124|ref|YP_006861107.1|	-	0.12	12.0	0.1	0.22	11.1	0.0	1.7	1	1	0	1	1	1	0	Archaeal	ATPase
MTHFR	PF02219.12	gi|408403125|ref|YP_006861108.1|	-	0.0011	18.1	0.0	0.0016	17.5	0.0	1.3	1	0	0	1	1	1	1	Methylenetetrahydrofolate	reductase
NUDIX	PF00293.23	gi|408403126|ref|YP_006861109.1|	-	4.1e-12	45.8	0.0	5e-12	45.6	0.0	1.1	1	0	0	1	1	1	1	NUDIX	domain
Phage_integrase	PF00589.17	gi|408403127|ref|YP_006861110.1|	-	4.2e-10	39.5	0.0	1.6e-09	37.6	0.0	2.0	1	1	0	1	1	1	1	Phage	integrase	family
Phage_int_SAM_4	PF13495.1	gi|408403127|ref|YP_006861110.1|	-	1.9e-05	24.9	1.0	0.00055	20.1	0.2	3.2	1	1	2	3	3	3	1	Phage	integrase,	N-terminal	SAM-like	domain
DZR	PF12773.2	gi|408403127|ref|YP_006861110.1|	-	0.0058	16.4	0.7	0.017	14.9	0.5	1.7	1	0	0	1	1	1	1	Double	zinc	ribbon
FlaC_arch	PF05377.6	gi|408403127|ref|YP_006861110.1|	-	0.088	12.7	0.2	0.22	11.4	0.1	1.6	1	0	0	1	1	1	0	Flagella	accessory	protein	C	(FlaC)
zf-RanBP	PF00641.13	gi|408403127|ref|YP_006861110.1|	-	2	7.5	6.3	1.2	8.3	2.4	2.0	2	0	0	2	2	2	0	Zn-finger	in	Ran	binding	protein	and	others
DUF3908	PF13048.1	gi|408403128|ref|YP_006861111.1|	-	0.0058	16.5	1.0	0.0069	16.3	0.7	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3908)
Lactamase_B_2	PF12706.2	gi|408403130|ref|YP_006861113.1|	-	8e-13	48.3	0.0	6.8e-12	45.3	0.0	2.1	2	0	0	2	2	2	1	Beta-lactamase	superfamily	domain
RMMBL	PF07521.7	gi|408403130|ref|YP_006861113.1|	-	2.9e-06	27.0	0.6	8e-06	25.5	0.4	1.8	1	0	0	1	1	1	1	RNA-metabolising	metallo-beta-lactamase
Lactamase_B	PF00753.22	gi|408403130|ref|YP_006861113.1|	-	3.7e-06	26.7	0.3	8.5e-06	25.5	0.1	1.8	2	0	0	2	2	2	1	Metallo-beta-lactamase	superfamily
Lactamase_B_3	PF13483.1	gi|408403130|ref|YP_006861113.1|	-	0.0061	16.2	0.0	0.014	15.1	0.0	1.5	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Imm15	PF15590.1	gi|408403130|ref|YP_006861113.1|	-	3.4	6.8	5.5	1.5	7.9	0.1	2.8	3	0	0	3	3	3	0	Immunity	protein	15
DUF234	PF03008.9	gi|408403132|ref|YP_006861115.1|	-	0.017	15.2	1.3	2.3	8.3	0.0	3.0	3	1	0	3	3	3	0	Archaea	bacterial	proteins	of	unknown	function
HSDR_N_2	PF13588.1	gi|408403132|ref|YP_006861115.1|	-	0.031	14.0	0.0	0.066	13.0	0.0	1.6	1	0	0	1	1	1	0	Type	I	restriction	enzyme	R	protein	N	terminus	(HSDR_N)
AnfG_VnfG	PF03139.10	gi|408403132|ref|YP_006861115.1|	-	0.1	12.3	1.2	0.28	11.0	0.8	1.6	1	0	0	1	1	1	0	Vanadium/alternative	nitrogenase	delta	subunit
Glycos_transf_1	PF00534.15	gi|408403133|ref|YP_006861116.1|	-	4.6e-18	65.2	0.0	6.8e-18	64.6	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.1	gi|408403133|ref|YP_006861116.1|	-	3.3e-05	24.0	0.0	5.9e-05	23.2	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.1	gi|408403133|ref|YP_006861116.1|	-	0.017	14.8	0.1	0.04	13.6	0.1	1.6	1	1	0	1	1	1	0	Glycosyltransferase	Family	4
DUF2310	PF10071.4	gi|408403134|ref|YP_006861117.1|	-	0.026	13.5	0.3	0.028	13.3	0.2	1.1	1	0	0	1	1	1	0	Zn-ribbon-containing,	possibly	nucleic-acid-binding	protein	(DUF2310)
DUF4179	PF13786.1	gi|408403135|ref|YP_006861118.1|	-	0.15	12.2	0.9	0.18	12.0	0.6	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4179)
DUF1182	PF06681.8	gi|408403136|ref|YP_006861119.1|	-	0.043	13.0	0.2	0.044	12.9	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1182)
UPF0086	PF01868.11	gi|408403137|ref|YP_006861120.1|	-	0.00038	20.0	0.1	0.1	12.2	0.0	2.2	2	0	0	2	2	2	2	Domain	of	unknown	function	UPF0086
CBS	PF00571.23	gi|408403138|ref|YP_006861121.1|	-	1.1e-25	89.0	5.6	2.3e-15	56.1	0.2	2.7	2	1	0	2	2	2	2	CBS	domain
GAGA	PF09237.6	gi|408403138|ref|YP_006861121.1|	-	2.1e-05	24.0	0.2	3.5e-05	23.3	0.1	1.3	1	0	0	1	1	1	1	GAGA	factor
zf-Di19	PF05605.7	gi|408403138|ref|YP_006861121.1|	-	0.0089	16.1	0.1	0.015	15.4	0.1	1.3	1	0	0	1	1	1	1	Drought	induced	19	protein	(Di19),	zinc-binding
TOBE_2	PF08402.5	gi|408403139|ref|YP_006861122.1|	-	0.0092	15.9	0.0	0.01	15.8	0.0	1.1	1	0	0	1	1	1	1	TOBE	domain
CBS	PF00571.23	gi|408403141|ref|YP_006861124.1|	-	8.9e-24	83.0	6.7	7.6e-12	44.8	0.5	2.3	2	0	0	2	2	2	2	CBS	domain
AMP-binding_C	PF13193.1	gi|408403141|ref|YP_006861124.1|	-	0.21	12.5	2.8	0.68	10.9	0.7	2.1	2	0	0	2	2	2	0	AMP-binding	enzyme	C-terminal	domain
Arabinose_Isome	PF02610.10	gi|408403142|ref|YP_006861125.1|	-	0.046	12.6	0.0	0.046	12.6	0.0	1.0	1	0	0	1	1	1	0	L-arabinose	isomerase
HTH_45	PF14947.1	gi|408403144|ref|YP_006861127.1|	-	3.9e-18	65.0	0.1	4.7e-18	64.7	0.1	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF4364	PF14277.1	gi|408403144|ref|YP_006861127.1|	-	0.02	14.5	0.1	0.021	14.4	0.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
HTH_45	PF14947.1	gi|408403146|ref|YP_006861129.1|	-	4.6e-05	23.1	0.1	6.6e-05	22.6	0.1	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_12	PF08461.5	gi|408403146|ref|YP_006861129.1|	-	0.00083	19.0	0.7	0.00098	18.8	0.5	1.4	1	1	0	1	1	1	1	Ribonuclease	R	winged-helix	domain
HTH_DeoR	PF08220.7	gi|408403146|ref|YP_006861129.1|	-	0.011	15.2	0.0	0.016	14.7	0.0	1.4	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
Ribosomal_S19e	PF01090.14	gi|408403146|ref|YP_006861129.1|	-	0.012	15.0	0.1	0.016	14.6	0.1	1.2	1	0	0	1	1	1	0	Ribosomal	protein	S19e
DUF4364	PF14277.1	gi|408403146|ref|YP_006861129.1|	-	0.026	14.1	0.1	0.033	13.8	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
Mrr_N	PF14338.1	gi|408403146|ref|YP_006861129.1|	-	0.037	14.1	0.2	0.068	13.2	0.1	1.4	1	1	0	1	1	1	0	Mrr	N-terminal	domain
RuvB_C	PF05491.8	gi|408403146|ref|YP_006861129.1|	-	0.039	13.5	0.1	0.058	13.0	0.1	1.4	1	1	0	1	1	1	0	Holliday	junction	DNA	helicase	ruvB	C-terminus
MotA_activ	PF09114.5	gi|408403146|ref|YP_006861129.1|	-	0.076	12.7	0.0	0.077	12.7	0.0	1.2	1	1	0	1	1	1	0	Transcription	factor	MotA,	activation	domain
HTH_27	PF13463.1	gi|408403146|ref|YP_006861129.1|	-	0.099	12.9	0.0	0.11	12.8	0.0	1.1	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
Cpn60_TCP1	PF00118.19	gi|408403147|ref|YP_006861130.1|	-	3.5e-164	547.0	12.7	4e-164	546.8	8.8	1.0	1	0	0	1	1	1	1	TCP-1/cpn60	chaperonin	family
HTH_20	PF12840.2	gi|408403148|ref|YP_006861131.1|	-	4.2e-13	48.8	0.0	1.2e-12	47.4	0.0	1.7	2	0	0	2	2	1	1	Helix-turn-helix	domain
HTH_5	PF01022.15	gi|408403148|ref|YP_006861131.1|	-	6.8e-13	48.0	0.0	7.2e-12	44.7	0.0	2.4	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
HTH_24	PF13412.1	gi|408403148|ref|YP_006861131.1|	-	1.4e-07	30.7	0.5	6.7e-07	28.5	0.1	2.1	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
ArsR	PF09824.4	gi|408403148|ref|YP_006861131.1|	-	2.9e-06	26.7	0.2	2.5e-05	23.6	0.0	2.2	1	1	1	2	2	2	1	ArsR	transcriptional	regulator
MarR	PF01047.17	gi|408403148|ref|YP_006861131.1|	-	4.8e-06	26.1	0.2	0.0044	16.6	0.0	2.6	3	0	0	3	3	2	1	MarR	family
PadR	PF03551.9	gi|408403148|ref|YP_006861131.1|	-	5.6e-06	26.0	0.9	6.2e-05	22.6	0.1	2.9	2	1	0	2	2	2	1	Transcriptional	regulator	PadR-like	family
TrmB	PF01978.14	gi|408403148|ref|YP_006861131.1|	-	6.2e-06	25.8	0.1	0.00093	18.8	0.0	2.7	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.2	gi|408403148|ref|YP_006861131.1|	-	4e-05	23.1	0.0	0.0024	17.4	0.0	2.4	2	0	0	2	2	2	1	MarR	family
HTH_11	PF08279.7	gi|408403148|ref|YP_006861131.1|	-	0.00048	19.7	0.1	0.0019	17.8	0.0	2.1	2	0	0	2	2	1	1	HTH	domain
HTH_Crp_2	PF13545.1	gi|408403148|ref|YP_006861131.1|	-	0.0009	18.9	0.0	0.0053	16.5	0.0	2.1	2	0	0	2	2	2	1	Crp-like	helix-turn-helix	domain
HTH_27	PF13463.1	gi|408403148|ref|YP_006861131.1|	-	0.003	17.8	0.0	0.21	11.9	0.0	2.6	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_34	PF13601.1	gi|408403148|ref|YP_006861131.1|	-	0.0034	17.3	0.0	0.0076	16.2	0.0	1.6	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_12	PF08461.5	gi|408403148|ref|YP_006861131.1|	-	0.0064	16.2	0.1	0.046	13.4	0.0	2.5	2	0	0	2	2	2	1	Ribonuclease	R	winged-helix	domain
HxlR	PF01638.12	gi|408403148|ref|YP_006861131.1|	-	0.0077	15.8	0.1	0.022	14.3	0.0	1.9	2	0	0	2	2	2	1	HxlR-like	helix-turn-helix
B-block_TFIIIC	PF04182.7	gi|408403148|ref|YP_006861131.1|	-	0.012	15.4	0.0	2	8.3	0.0	2.4	2	0	0	2	2	2	0	B-block	binding	subunit	of	TFIIIC
TFIIE_alpha	PF02002.12	gi|408403148|ref|YP_006861131.1|	-	0.022	14.2	0.1	0.022	14.2	0.1	2.3	2	1	0	2	2	2	0	TFIIE	alpha	subunit
HTH_36	PF13730.1	gi|408403148|ref|YP_006861131.1|	-	0.026	14.6	0.0	1.6	8.9	0.0	2.8	3	0	0	3	3	2	0	Helix-turn-helix	domain
IF2_N	PF04760.10	gi|408403148|ref|YP_006861131.1|	-	0.035	13.7	1.7	1.3	8.7	0.0	3.3	3	0	0	3	3	3	0	Translation	initiation	factor	IF-2,	N-terminal	region
IncA	PF04156.9	gi|408403148|ref|YP_006861131.1|	-	0.061	12.9	2.2	0.11	12.1	1.5	1.5	1	0	0	1	1	1	0	IncA	protein
DUF2250	PF10007.4	gi|408403148|ref|YP_006861131.1|	-	0.066	13.1	0.1	0.066	13.1	0.1	2.4	3	1	0	3	3	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_CodY	PF08222.6	gi|408403148|ref|YP_006861131.1|	-	0.067	12.5	0.0	0.2	11.0	0.0	1.8	1	0	0	1	1	1	0	CodY	helix-turn-helix	domain
HTH_AsnC-type	PF13404.1	gi|408403148|ref|YP_006861131.1|	-	0.067	12.7	0.2	2.7	7.6	0.0	2.9	2	1	0	2	2	2	0	AsnC-type	helix-turn-helix	domain
Reo_sigmaC	PF04582.7	gi|408403148|ref|YP_006861131.1|	-	0.069	12.3	0.1	0.1	11.7	0.1	1.2	1	0	0	1	1	1	0	Reovirus	sigma	C	capsid	protein
TBPIP	PF07106.8	gi|408403148|ref|YP_006861131.1|	-	0.075	12.5	4.5	0.15	11.6	2.3	2.0	2	1	0	2	2	2	0	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
DASH_Dam1	PF08653.5	gi|408403148|ref|YP_006861131.1|	-	0.097	12.4	0.2	0.21	11.3	0.1	1.6	1	0	0	1	1	1	0	DASH	complex	subunit	Dam1
CorA	PF01544.13	gi|408403148|ref|YP_006861131.1|	-	0.1	11.5	0.5	0.15	11.0	0.4	1.4	1	0	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
HTH_IclR	PF09339.5	gi|408403148|ref|YP_006861131.1|	-	0.11	12.1	0.0	1.5	8.4	0.0	2.4	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
Lzipper-MIP1	PF14389.1	gi|408403148|ref|YP_006861131.1|	-	0.17	11.9	3.8	0.63	10.1	1.2	2.5	2	1	0	2	2	2	0	Leucine-zipper	of	ternary	complex	factor	MIP1
TelA	PF05816.6	gi|408403148|ref|YP_006861131.1|	-	0.22	10.1	3.3	0.18	10.4	0.1	2.2	2	1	1	3	3	3	0	Toxic	anion	resistance	protein	(TelA)
Fib_alpha	PF08702.5	gi|408403148|ref|YP_006861131.1|	-	0.3	11.2	1.3	2.7	8.0	0.2	2.3	2	0	0	2	2	2	0	Fibrinogen	alpha/beta	chain	family
TMF_DNA_bd	PF12329.3	gi|408403148|ref|YP_006861131.1|	-	5.1	6.9	7.5	12	5.7	3.1	2.8	2	1	0	2	2	2	0	TATA	element	modulatory	factor	1	DNA	binding
Hemerythrin	PF01814.18	gi|408403149|ref|YP_006861132.1|	-	2.3e-12	47.2	2.1	5e-12	46.1	0.9	1.9	2	1	1	3	3	3	2	Hemerythrin	HHE	cation	binding	domain
Prominin	PF05478.6	gi|408403149|ref|YP_006861132.1|	-	0.1	10.1	0.1	0.15	9.5	0.1	1.2	1	0	0	1	1	1	0	Prominin
Xpo1	PF08389.7	gi|408403149|ref|YP_006861132.1|	-	0.11	12.4	0.1	0.63	9.9	0.1	1.9	1	1	1	2	2	2	0	Exportin	1-like	protein
HSP20	PF00011.16	gi|408403150|ref|YP_006861133.1|	-	2.7e-10	40.0	1.3	6.3e-09	35.6	0.9	2.2	1	1	0	1	1	1	1	Hsp20/alpha	crystallin	family
PIH1	PF08190.7	gi|408403150|ref|YP_006861133.1|	-	2.4e-07	30.5	0.0	2.9e-07	30.2	0.0	1.1	1	0	0	1	1	1	1	pre-RNA	processing	PIH1/Nop17
CS	PF04969.11	gi|408403150|ref|YP_006861133.1|	-	0.0017	18.8	0.9	0.0069	16.9	0.4	2.0	1	1	1	2	2	2	1	CS	domain
GvpH	PF05455.6	gi|408403150|ref|YP_006861133.1|	-	0.0017	18.0	0.0	0.0024	17.5	0.0	1.2	1	0	0	1	1	1	1	GvpH
Glyco_hydro_65C	PF03633.10	gi|408403150|ref|YP_006861133.1|	-	0.14	12.2	0.1	3.6	7.7	0.0	2.3	2	0	0	2	2	2	0	Glycosyl	hydrolase	family	65,	C-terminal	domain
AAA	PF00004.24	gi|408403151|ref|YP_006861134.1|	-	3.7e-100	331.3	0.0	7.8e-49	165.2	0.0	2.5	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
CDC48_N	PF02359.13	gi|408403151|ref|YP_006861134.1|	-	5.5e-26	90.3	0.0	1.9e-25	88.6	0.0	2.0	1	0	0	1	1	1	1	Cell	division	protein	48	(CDC48),	N-terminal	domain
AAA_2	PF07724.9	gi|408403151|ref|YP_006861134.1|	-	2.7e-16	59.9	0.0	1.1e-07	31.9	0.0	2.6	2	0	0	2	2	2	2	AAA	domain	(Cdc48	subfamily)
RuvB_N	PF05496.7	gi|408403151|ref|YP_006861134.1|	-	1.3e-14	53.8	0.0	2.4e-08	33.3	0.0	2.7	3	0	0	3	3	2	2	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_22	PF13401.1	gi|408403151|ref|YP_006861134.1|	-	1.1e-13	51.4	0.5	5.1e-05	23.4	0.1	3.9	2	2	0	2	2	2	2	AAA	domain
AAA_16	PF13191.1	gi|408403151|ref|YP_006861134.1|	-	2.3e-12	47.3	0.0	1.5e-05	25.0	0.0	3.3	2	1	1	3	3	3	2	AAA	ATPase	domain
AAA_17	PF13207.1	gi|408403151|ref|YP_006861134.1|	-	9.5e-12	45.8	0.0	5.2e-05	24.0	0.0	2.7	2	0	0	2	2	2	2	AAA	domain
CDC48_2	PF02933.12	gi|408403151|ref|YP_006861134.1|	-	6e-11	41.8	0.1	3.3e-10	39.4	0.0	2.2	2	0	0	2	2	2	1	Cell	division	protein	48	(CDC48),	domain	2
TIP49	PF06068.8	gi|408403151|ref|YP_006861134.1|	-	1.6e-10	40.2	0.1	0.00069	18.4	0.0	3.1	3	0	0	3	3	3	2	TIP49	C-terminus
AAA_5	PF07728.9	gi|408403151|ref|YP_006861134.1|	-	2e-10	40.5	0.8	0.0014	18.3	0.1	4.0	2	2	0	2	2	2	2	AAA	domain	(dynein-related	subfamily)
Zeta_toxin	PF06414.7	gi|408403151|ref|YP_006861134.1|	-	4.1e-10	39.0	0.0	0.00051	19.2	0.0	2.3	2	0	0	2	2	2	2	Zeta	toxin
AAA_33	PF13671.1	gi|408403151|ref|YP_006861134.1|	-	1e-09	38.4	0.0	7.5e-05	22.6	0.0	2.7	2	1	0	2	2	2	2	AAA	domain
AAA_19	PF13245.1	gi|408403151|ref|YP_006861134.1|	-	4.4e-09	35.9	1.7	0.001	18.7	0.1	2.6	2	0	0	2	2	2	2	Part	of	AAA	domain
AAA_14	PF13173.1	gi|408403151|ref|YP_006861134.1|	-	1.7e-08	34.4	0.0	0.0012	18.7	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
IstB_IS21	PF01695.12	gi|408403151|ref|YP_006861134.1|	-	1.8e-08	33.9	0.2	0.0061	15.9	0.0	2.4	2	0	0	2	2	2	2	IstB-like	ATP	binding	protein
AAA_25	PF13481.1	gi|408403151|ref|YP_006861134.1|	-	6.6e-08	32.1	5.9	0.044	13.1	0.2	4.3	2	2	0	3	3	3	3	AAA	domain
Mg_chelatase	PF01078.16	gi|408403151|ref|YP_006861134.1|	-	1.4e-07	30.9	0.6	0.0059	15.7	0.0	2.5	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
AAA_18	PF13238.1	gi|408403151|ref|YP_006861134.1|	-	3.4e-07	30.6	1.2	0.015	15.6	0.0	3.1	3	0	0	3	3	3	2	AAA	domain
AAA_28	PF13521.1	gi|408403151|ref|YP_006861134.1|	-	7.2e-07	29.3	0.0	0.017	15.1	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
RNA_helicase	PF00910.17	gi|408403151|ref|YP_006861134.1|	-	2.7e-06	27.4	0.0	0.098	12.8	0.0	2.8	2	1	0	2	2	2	2	RNA	helicase
Sigma54_activat	PF00158.21	gi|408403151|ref|YP_006861134.1|	-	4.6e-06	26.2	0.0	0.2	11.1	0.0	3.3	3	0	0	3	3	3	2	Sigma-54	interaction	domain
AAA_3	PF07726.6	gi|408403151|ref|YP_006861134.1|	-	1.2e-05	24.9	0.0	0.19	11.3	0.0	2.8	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
Arch_ATPase	PF01637.13	gi|408403151|ref|YP_006861134.1|	-	1.4e-05	24.9	0.1	0.013	15.1	0.0	3.1	2	1	1	3	3	3	1	Archaeal	ATPase
NACHT	PF05729.7	gi|408403151|ref|YP_006861134.1|	-	1.5e-05	24.7	0.3	0.21	11.2	0.0	3.5	4	0	0	4	4	3	2	NACHT	domain
PhoH	PF02562.11	gi|408403151|ref|YP_006861134.1|	-	4.6e-05	22.7	0.3	0.16	11.1	0.0	2.6	2	0	0	2	2	2	2	PhoH-like	protein
AAA_24	PF13479.1	gi|408403151|ref|YP_006861134.1|	-	5.1e-05	22.9	0.4	0.12	11.8	0.2	2.5	2	0	0	2	2	2	2	AAA	domain
Parvo_NS1	PF01057.12	gi|408403151|ref|YP_006861134.1|	-	5.7e-05	22.1	0.1	0.062	12.1	0.0	2.2	2	0	0	2	2	2	2	Parvovirus	non-structural	protein	NS1
KaiC	PF06745.8	gi|408403151|ref|YP_006861134.1|	-	6.8e-05	22.0	0.3	0.31	10.1	0.0	3.3	3	0	0	3	3	3	2	KaiC
NB-ARC	PF00931.17	gi|408403151|ref|YP_006861134.1|	-	9.8e-05	21.3	0.1	0.12	11.1	0.0	2.3	2	0	0	2	2	2	2	NB-ARC	domain
Sigma54_activ_2	PF14532.1	gi|408403151|ref|YP_006861134.1|	-	0.00011	22.2	0.0	0.69	9.9	0.0	2.6	2	0	0	2	2	2	2	Sigma-54	interaction	domain
AAA_11	PF13086.1	gi|408403151|ref|YP_006861134.1|	-	0.00017	21.2	0.0	0.31	10.5	0.0	2.5	2	1	0	2	2	2	2	AAA	domain
AAA_30	PF13604.1	gi|408403151|ref|YP_006861134.1|	-	0.00018	21.1	0.1	0.65	9.5	0.0	2.6	2	0	0	2	2	2	2	AAA	domain
DUF2075	PF09848.4	gi|408403151|ref|YP_006861134.1|	-	0.00022	20.3	0.3	0.16	10.9	0.0	2.8	3	0	0	3	3	3	1	Uncharacterized	conserved	protein	(DUF2075)
ABC_tran	PF00005.22	gi|408403151|ref|YP_006861134.1|	-	0.00033	20.9	0.0	1.1	9.5	0.0	2.7	2	0	0	2	2	2	2	ABC	transporter
Bac_DnaA	PF00308.13	gi|408403151|ref|YP_006861134.1|	-	0.00047	19.8	0.0	0.21	11.1	0.0	3.2	2	1	1	3	3	3	1	Bacterial	dnaA	protein
NTPase_1	PF03266.10	gi|408403151|ref|YP_006861134.1|	-	0.0006	19.5	3.9	3.2	7.4	0.0	4.0	3	1	1	4	4	4	0	NTPase
DUF815	PF05673.8	gi|408403151|ref|YP_006861134.1|	-	0.00064	18.7	0.0	0.64	8.8	0.0	2.4	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF815)
ResIII	PF04851.10	gi|408403151|ref|YP_006861134.1|	-	0.00087	19.1	0.0	0.82	9.4	0.0	2.5	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
CPT	PF07931.7	gi|408403151|ref|YP_006861134.1|	-	0.00089	18.9	0.1	2.1	7.9	0.0	3.2	3	1	0	3	3	3	1	Chloramphenicol	phosphotransferase-like	protein
T2SE	PF00437.15	gi|408403151|ref|YP_006861134.1|	-	0.0015	17.4	0.0	1.7	7.4	0.0	2.6	2	0	0	2	2	2	2	Type	II/IV	secretion	system	protein
ATP-synt_ab	PF00006.20	gi|408403151|ref|YP_006861134.1|	-	0.0016	17.9	0.0	0.27	10.6	0.0	2.4	2	0	0	2	2	2	1	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
UFD1	PF03152.9	gi|408403151|ref|YP_006861134.1|	-	0.0017	17.5	0.0	0.11	11.6	0.0	2.4	1	1	1	2	2	2	1	Ubiquitin	fusion	degradation	protein	UFD1
SKI	PF01202.17	gi|408403151|ref|YP_006861134.1|	-	0.0018	18.1	0.1	2.3	8.0	0.0	2.6	2	0	0	2	2	2	1	Shikimate	kinase
UPF0079	PF02367.12	gi|408403151|ref|YP_006861134.1|	-	0.0046	16.5	0.1	3.2	7.4	0.0	2.5	2	1	0	2	2	2	0	Uncharacterised	P-loop	hydrolase	UPF0079
Cytidylate_kin2	PF13189.1	gi|408403151|ref|YP_006861134.1|	-	0.0093	15.8	0.0	2.9	7.7	0.0	2.7	2	0	0	2	2	2	0	Cytidylate	kinase-like	family
AFG1_ATPase	PF03969.11	gi|408403151|ref|YP_006861134.1|	-	0.012	14.4	0.0	2.7	6.7	0.0	2.2	2	0	0	2	2	2	0	AFG1-like	ATPase
Torsin	PF06309.6	gi|408403151|ref|YP_006861134.1|	-	0.019	14.8	0.2	3.1	7.7	0.0	3.0	3	0	0	3	3	3	0	Torsin
MCM	PF00493.18	gi|408403151|ref|YP_006861134.1|	-	0.028	13.2	0.0	3.2	6.4	0.0	2.6	2	0	0	2	2	2	0	MCM2/3/5	family
Viral_helicase1	PF01443.13	gi|408403151|ref|YP_006861134.1|	-	0.034	13.6	0.0	3.1	7.2	0.0	2.4	2	0	0	2	2	2	0	Viral	(Superfamily	1)	RNA	helicase
AAA_23	PF13476.1	gi|408403151|ref|YP_006861134.1|	-	0.041	14.2	1.3	2.2	8.5	0.0	3.1	4	0	0	4	4	2	0	AAA	domain
AAA_29	PF13555.1	gi|408403151|ref|YP_006861134.1|	-	0.042	13.3	0.0	7.7	6.1	0.0	2.5	2	0	0	2	2	2	0	P-loop	containing	region	of	AAA	domain
Guanylate_kin	PF00625.16	gi|408403151|ref|YP_006861134.1|	-	0.046	13.1	0.2	9.5	5.6	0.0	3.5	2	1	1	3	3	3	0	Guanylate	kinase
KTI12	PF08433.5	gi|408403151|ref|YP_006861134.1|	-	0.12	11.5	0.1	15	4.6	0.0	2.6	2	0	0	2	2	2	0	Chromatin	associated	protein	KTI12
DAP3	PF10236.4	gi|408403151|ref|YP_006861134.1|	-	0.12	11.2	0.0	5.8	5.7	0.0	2.2	2	0	0	2	2	2	0	Mitochondrial	ribosomal	death-associated	protein	3
Hum_adeno_E3A	PF05393.6	gi|408403152|ref|YP_006861135.1|	-	0.1	12.2	0.2	0.11	12.2	0.2	1.1	1	0	0	1	1	1	0	Human	adenovirus	early	E3A	glycoprotein
zf-C4H2	PF10146.4	gi|408403152|ref|YP_006861135.1|	-	0.19	11.6	5.7	0.24	11.4	4.0	1.1	1	0	0	1	1	1	0	Zinc	finger-containing	protein
Lon_C	PF05362.8	gi|408403153|ref|YP_006861136.1|	-	3e-10	39.7	1.5	6.1e-10	38.7	1.1	1.5	1	1	0	1	1	1	1	Lon	protease	(S16)	C-terminal	proteolytic	domain
AKNA	PF12443.3	gi|408403153|ref|YP_006861136.1|	-	0.004	17.1	0.0	0.0082	16.1	0.0	1.5	1	0	0	1	1	1	1	AT-hook-containing	transcription	factor
DUF4363	PF14276.1	gi|408403153|ref|YP_006861136.1|	-	0.0046	16.6	0.6	0.011	15.4	0.4	1.6	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4363)
CASP_C	PF08172.7	gi|408403153|ref|YP_006861136.1|	-	0.017	14.1	1.0	0.026	13.5	0.7	1.2	1	0	0	1	1	1	0	CASP	C	terminal
TMF_DNA_bd	PF12329.3	gi|408403153|ref|YP_006861136.1|	-	0.046	13.5	3.2	0.11	12.3	2.2	1.6	1	0	0	1	1	1	0	TATA	element	modulatory	factor	1	DNA	binding
DUF3972	PF13118.1	gi|408403153|ref|YP_006861136.1|	-	0.051	13.6	0.8	0.14	12.2	0.4	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3972)
FtsL	PF04999.8	gi|408403153|ref|YP_006861136.1|	-	0.099	12.3	0.1	0.2	11.3	0.0	1.5	1	0	0	1	1	1	0	Cell	division	protein	FtsL
Tetraspannin	PF00335.15	gi|408403155|ref|YP_006861138.1|	-	0.25	10.5	2.3	0.32	10.2	1.6	1.3	1	1	0	1	1	1	0	Tetraspanin	family
VKOR	PF07884.9	gi|408403155|ref|YP_006861138.1|	-	0.3	10.9	6.6	2.5	7.9	1.3	2.5	1	1	0	2	2	2	0	Vitamin	K	epoxide	reductase	family
DUF805	PF05656.9	gi|408403155|ref|YP_006861138.1|	-	0.31	10.8	5.4	0.49	10.2	3.7	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF805)
FtsX	PF02687.16	gi|408403155|ref|YP_006861138.1|	-	1.7	8.4	6.4	0.28	10.9	0.7	2.0	2	0	0	2	2	2	0	FtsX-like	permease	family
PepSY	PF03413.14	gi|408403156|ref|YP_006861139.1|	-	0.00029	21.4	0.0	0.00044	20.8	0.0	1.5	1	1	0	1	1	1	1	Peptidase	propeptide	and	YPEB	domain
SKG6	PF08693.5	gi|408403156|ref|YP_006861139.1|	-	0.063	12.5	1.4	0.12	11.7	1.0	1.4	1	0	0	1	1	1	0	Transmembrane	alpha-helix	domain
TrfA	PF07042.6	gi|408403156|ref|YP_006861139.1|	-	0.065	12.0	0.0	0.084	11.6	0.0	1.1	1	0	0	1	1	1	0	TrfA	protein
Laminin_G_3	PF13385.1	gi|408403158|ref|YP_006861141.1|	-	8.1e-12	45.6	4.6	8.1e-12	45.6	3.2	1.7	2	0	0	2	2	2	1	Concanavalin	A-like	lectin/glucanases	superfamily
F5_F8_type_C	PF00754.20	gi|408403160|ref|YP_006861143.1|	-	7.4e-15	54.9	0.9	7.4e-15	54.9	0.6	1.7	2	0	0	2	2	2	1	F5/8	type	C	domain
F5_F8_type_C	PF00754.20	gi|408403161|ref|YP_006861144.1|	-	1.7e-08	34.3	5.9	1.7e-08	34.3	4.1	2.4	2	2	1	3	3	3	1	F5/8	type	C	domain
DUF4268	PF14088.1	gi|408403161|ref|YP_006861144.1|	-	0.095	12.3	0.0	0.43	10.2	0.0	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4268)
Plasmid_stabil	PF05016.9	gi|408403162|ref|YP_006861145.1|	-	0.00037	20.8	0.0	0.00049	20.4	0.0	1.2	1	0	0	1	1	1	1	Plasmid	stabilisation	system	protein
CDC48_N	PF02359.13	gi|408403164|ref|YP_006861147.1|	-	6.2e-10	38.8	0.0	1.1e-09	38.0	0.0	1.5	1	0	0	1	1	1	1	Cell	division	protein	48	(CDC48),	N-terminal	domain
CDC48_2	PF02933.12	gi|408403164|ref|YP_006861147.1|	-	0.00053	19.5	0.5	0.0018	17.8	0.0	1.9	2	0	0	2	2	2	1	Cell	division	protein	48	(CDC48),	domain	2
UPF0228	PF05727.6	gi|408403165|ref|YP_006861148.1|	-	0.14	11.8	1.1	0.46	10.2	0.1	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	(UPF0228)
MtrG	PF04210.8	gi|408403166|ref|YP_006861149.1|	-	0.027	14.1	0.2	0.049	13.2	0.1	1.4	1	0	0	1	1	1	0	Tetrahydromethanopterin	S-methyltransferase,	subunit	G
zf-C2H2	PF00096.21	gi|408403167|ref|YP_006861150.1|	-	0.00019	21.5	1.1	0.00029	21.0	0.7	1.3	1	0	0	1	1	1	1	Zinc	finger,	C2H2	type
zf-C2H2_4	PF13894.1	gi|408403167|ref|YP_006861150.1|	-	0.0033	17.6	0.3	0.0054	16.9	0.2	1.3	1	0	0	1	1	1	1	C2H2-type	zinc	finger
XPA_N	PF01286.13	gi|408403167|ref|YP_006861150.1|	-	0.094	12.4	0.3	0.14	11.8	0.2	1.2	1	0	0	1	1	1	0	XPA	protein	N-terminal
zf-C2HC_2	PF13913.1	gi|408403167|ref|YP_006861150.1|	-	0.1	12.3	0.1	0.18	11.5	0.1	1.4	1	0	0	1	1	1	0	zinc-finger	of	a	C2HC-type
DUF2972	PF11186.3	gi|408403168|ref|YP_006861151.1|	-	0.012	15.4	0.1	0.012	15.4	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2972)
UPF0147	PF03685.8	gi|408403168|ref|YP_006861151.1|	-	0.089	12.6	0.1	0.13	12.0	0.0	1.2	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0147)
Hydrolase_3	PF08282.7	gi|408403172|ref|YP_006861155.1|	-	9.4e-28	97.4	0.1	1.2e-18	67.6	0.0	2.0	1	1	1	2	2	2	2	haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.21	gi|408403172|ref|YP_006861155.1|	-	1.2e-07	32.3	0.4	0.0056	17.1	0.0	2.3	1	1	0	2	2	2	2	haloacid	dehalogenase-like	hydrolase
S6PP	PF05116.8	gi|408403172|ref|YP_006861155.1|	-	1.9e-07	30.6	0.0	0.006	15.9	0.0	2.1	2	0	0	2	2	2	2	Sucrose-6F-phosphate	phosphohydrolase
HAD	PF12710.2	gi|408403172|ref|YP_006861155.1|	-	6e-05	23.2	0.1	0.037	14.1	0.0	2.4	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.1	gi|408403172|ref|YP_006861155.1|	-	0.01	15.4	0.0	0.026	14.2	0.0	1.7	1	0	0	1	1	1	0	HAD-hyrolase-like
LNS2	PF08235.8	gi|408403172|ref|YP_006861155.1|	-	0.028	13.9	0.2	0.079	12.5	0.1	1.8	1	1	0	1	1	1	0	LNS2	(Lipin/Ned1/Smp2)
Hydrolase_6	PF13344.1	gi|408403172|ref|YP_006861155.1|	-	0.082	12.8	0.0	0.2	11.5	0.0	1.6	1	0	0	1	1	1	0	Haloacid	dehalogenase-like	hydrolase
tRNA-synt_1d	PF00750.14	gi|408403173|ref|YP_006861156.1|	-	4.8e-39	134.1	2.0	8.3e-28	97.2	0.1	2.3	1	1	1	2	2	2	2	tRNA	synthetases	class	I	(R)
DALR_1	PF05746.10	gi|408403173|ref|YP_006861156.1|	-	1.2e-32	112.3	3.8	2.2e-32	111.4	0.6	2.3	2	0	0	2	2	2	1	DALR	anticodon	binding	domain
Arg_tRNA_synt_N	PF03485.11	gi|408403173|ref|YP_006861156.1|	-	3.1e-18	66.0	0.1	1.8e-17	63.6	0.0	2.4	3	0	0	3	3	3	1	Arginyl	tRNA	synthetase	N	terminal	domain
tRNA-synt_1g	PF09334.6	gi|408403173|ref|YP_006861156.1|	-	0.021	13.5	0.2	0.035	12.7	0.1	1.3	1	0	0	1	1	1	0	tRNA	synthetases	class	I	(M)
zf-C3HC4_3	PF13920.1	gi|408403174|ref|YP_006861157.1|	-	0.19	11.4	3.8	0.25	11.0	2.6	1.2	1	0	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
GCD14	PF08704.5	gi|408403175|ref|YP_006861158.1|	-	1.1e-36	126.5	0.0	5.4e-34	117.8	0.0	2.1	1	1	1	2	2	2	2	tRNA	methyltransferase	complex	GCD14	subunit
PCMT	PF01135.14	gi|408403175|ref|YP_006861158.1|	-	2e-12	47.1	0.0	3.1e-12	46.4	0.0	1.4	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_31	PF13847.1	gi|408403175|ref|YP_006861158.1|	-	2.3e-12	46.7	0.0	3.2e-12	46.3	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|408403175|ref|YP_006861158.1|	-	9.1e-12	45.5	0.0	1.7e-11	44.6	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|408403175|ref|YP_006861158.1|	-	2.8e-10	40.2	0.0	2.6e-09	37.1	0.0	2.1	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_3	PF01596.12	gi|408403175|ref|YP_006861158.1|	-	2.3e-07	30.0	0.0	3.8e-07	29.3	0.0	1.3	1	0	0	1	1	1	1	O-methyltransferase
Ubie_methyltran	PF01209.13	gi|408403175|ref|YP_006861158.1|	-	2.3e-06	26.9	0.0	3.9e-06	26.1	0.0	1.4	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
MTS	PF05175.9	gi|408403175|ref|YP_006861158.1|	-	2.7e-06	26.8	0.0	6.1e-06	25.7	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_24	PF13578.1	gi|408403175|ref|YP_006861158.1|	-	6.7e-06	26.8	0.0	1.5e-05	25.8	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
PrmA	PF06325.8	gi|408403175|ref|YP_006861158.1|	-	2.7e-05	23.4	0.0	4e-05	22.8	0.0	1.3	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_11	PF08241.7	gi|408403175|ref|YP_006861158.1|	-	3.5e-05	24.2	0.0	0.00011	22.5	0.0	1.9	2	1	0	2	2	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|408403175|ref|YP_006861158.1|	-	0.00011	22.4	0.0	0.00028	21.1	0.0	1.7	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|408403175|ref|YP_006861158.1|	-	0.00014	22.3	0.0	0.00076	19.9	0.0	2.2	2	1	0	2	2	2	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|408403175|ref|YP_006861158.1|	-	0.00014	21.5	0.0	0.00038	20.2	0.0	1.8	2	0	0	2	2	2	1	Methyltransferase	domain
Fibrillarin	PF01269.12	gi|408403175|ref|YP_006861158.1|	-	0.00071	18.5	0.0	0.0015	17.5	0.0	1.5	1	0	0	1	1	1	1	Fibrillarin
RrnaAD	PF00398.15	gi|408403175|ref|YP_006861158.1|	-	0.0016	17.5	0.0	0.0024	16.9	0.0	1.3	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
CMAS	PF02353.15	gi|408403175|ref|YP_006861158.1|	-	0.0022	17.1	0.0	0.0041	16.2	0.0	1.5	1	1	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
UPF0020	PF01170.13	gi|408403175|ref|YP_006861158.1|	-	0.0035	16.9	0.0	0.011	15.3	0.0	1.8	1	1	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
DUF938	PF06080.7	gi|408403175|ref|YP_006861158.1|	-	0.04	13.4	0.0	0.066	12.7	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF938)
Met_10	PF02475.11	gi|408403175|ref|YP_006861158.1|	-	0.056	13.0	0.0	0.098	12.2	0.0	1.4	1	0	0	1	1	1	0	Met-10+	like-protein
Methyltransf_32	PF13679.1	gi|408403175|ref|YP_006861158.1|	-	0.066	12.8	0.0	0.17	11.5	0.0	1.7	1	1	0	1	1	1	0	Methyltransferase	domain
Methyltransf_16	PF10294.4	gi|408403175|ref|YP_006861158.1|	-	0.069	12.5	0.0	0.15	11.5	0.0	1.6	2	0	0	2	2	2	0	Putative	methyltransferase
CmcI	PF04989.7	gi|408403175|ref|YP_006861158.1|	-	0.11	11.8	0.0	0.21	10.8	0.0	1.4	1	0	0	1	1	1	0	Cephalosporin	hydroxylase
YqzM	PF14141.1	gi|408403176|ref|YP_006861159.1|	-	0.021	14.6	0.3	0.71	9.6	0.0	2.6	2	0	0	2	2	2	0	YqzM-like	protein
DUF192	PF02643.10	gi|408403177|ref|YP_006861160.1|	-	4.6e-25	87.3	0.0	8.7e-25	86.5	0.0	1.4	2	0	0	2	2	2	1	Uncharacterized	ACR,	COG1430
AAA_19	PF13245.1	gi|408403177|ref|YP_006861160.1|	-	0.072	12.8	0.5	0.13	11.9	0.4	1.4	1	0	0	1	1	1	0	Part	of	AAA	domain
HTH_OrfB_IS605	PF12323.3	gi|408403178|ref|YP_006861161.1|	-	3e-09	36.0	0.4	3.2e-09	35.9	0.3	1.1	1	0	0	1	1	1	1	Helix-turn-helix	domain
OrfB_IS605	PF01385.14	gi|408403179|ref|YP_006861162.1|	-	3.3e-15	56.1	0.2	4.1e-15	55.8	0.2	1.1	1	0	0	1	1	1	1	Probable	transposase
TrmB	PF01978.14	gi|408403180|ref|YP_006861163.1|	-	7.1e-17	60.8	0.3	1.6e-16	59.7	0.2	1.7	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
RapA_C	PF12137.3	gi|408403181|ref|YP_006861164.1|	-	0.053	12.3	0.1	0.26	10.1	0.0	1.8	2	0	0	2	2	2	0	RNA	polymerase	recycling	family	C-terminal
TROVE	PF05731.6	gi|408403181|ref|YP_006861164.1|	-	0.087	11.5	0.0	0.1	11.3	0.0	1.1	1	0	0	1	1	1	0	TROVE	domain
ENTH	PF01417.15	gi|408403182|ref|YP_006861165.1|	-	0.027	14.3	0.1	0.04	13.7	0.1	1.2	1	0	0	1	1	1	0	ENTH	domain
Potyvirid-P3	PF13608.1	gi|408403182|ref|YP_006861165.1|	-	0.04	13.0	0.8	0.079	12.0	0.3	1.6	1	1	1	2	2	2	0	Protein	P3	of	Potyviral	polyprotein
DUF2383	PF09537.5	gi|408403182|ref|YP_006861165.1|	-	0.047	13.9	1.9	0.28	11.4	0.1	2.4	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF2383)
Ran-binding	PF05508.6	gi|408403182|ref|YP_006861165.1|	-	0.066	12.0	1.7	0.08	11.8	1.2	1.1	1	0	0	1	1	1	0	RanGTP-binding	protein
AAA	PF00004.24	gi|408403183|ref|YP_006861166.1|	-	1.3e-36	125.7	0.0	2.3e-36	124.8	0.0	1.4	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
MIT	PF04212.13	gi|408403183|ref|YP_006861166.1|	-	5e-08	32.7	4.4	7.2e-08	32.2	2.0	2.0	2	0	0	2	2	2	1	MIT	(microtubule	interacting	and	transport)	domain
AAA_22	PF13401.1	gi|408403183|ref|YP_006861166.1|	-	1.5e-05	25.1	0.0	0.00021	21.4	0.0	2.7	1	1	1	2	2	2	1	AAA	domain
AAA_2	PF07724.9	gi|408403183|ref|YP_006861166.1|	-	6.4e-05	22.9	0.0	0.00014	21.7	0.0	1.6	1	0	0	1	1	1	1	AAA	domain	(Cdc48	subfamily)
AAA_16	PF13191.1	gi|408403183|ref|YP_006861166.1|	-	0.0001	22.3	0.0	0.00079	19.4	0.0	2.2	1	1	1	2	2	2	1	AAA	ATPase	domain
RuvB_N	PF05496.7	gi|408403183|ref|YP_006861166.1|	-	0.00015	20.9	0.0	0.00028	19.9	0.0	1.5	1	1	0	1	1	1	1	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_14	PF13173.1	gi|408403183|ref|YP_006861166.1|	-	0.00016	21.5	0.0	0.00046	20.0	0.0	1.8	2	0	0	2	2	1	1	AAA	domain
AAA_17	PF13207.1	gi|408403183|ref|YP_006861166.1|	-	0.00025	21.8	0.0	0.00081	20.2	0.0	1.9	1	1	0	1	1	1	1	AAA	domain
Zeta_toxin	PF06414.7	gi|408403183|ref|YP_006861166.1|	-	0.00049	19.2	0.0	0.001	18.1	0.0	1.5	1	0	0	1	1	1	1	Zeta	toxin
AAA_25	PF13481.1	gi|408403183|ref|YP_006861166.1|	-	0.00055	19.3	0.3	0.0071	15.7	0.1	2.2	1	1	1	2	2	2	1	AAA	domain
AAA_5	PF07728.9	gi|408403183|ref|YP_006861166.1|	-	0.0017	18.1	0.0	0.028	14.1	0.0	2.6	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
Vps4_C	PF09336.5	gi|408403183|ref|YP_006861166.1|	-	0.0022	17.8	0.0	0.012	15.5	0.0	2.0	2	0	0	2	2	2	1	Vps4	C	terminal	oligomerisation	domain
AAA_19	PF13245.1	gi|408403183|ref|YP_006861166.1|	-	0.0038	16.9	0.0	0.0095	15.6	0.0	1.6	1	0	0	1	1	1	1	Part	of	AAA	domain
AAA_33	PF13671.1	gi|408403183|ref|YP_006861166.1|	-	0.0069	16.2	0.0	0.011	15.6	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_24	PF13479.1	gi|408403183|ref|YP_006861166.1|	-	0.0088	15.6	0.0	0.023	14.3	0.0	1.7	2	0	0	2	2	2	1	AAA	domain
IstB_IS21	PF01695.12	gi|408403183|ref|YP_006861166.1|	-	0.0089	15.4	0.0	0.014	14.7	0.0	1.4	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
TIP49	PF06068.8	gi|408403183|ref|YP_006861166.1|	-	0.01	14.5	0.0	0.032	12.9	0.0	1.7	1	1	1	2	2	2	0	TIP49	C-terminus
TPR_11	PF13414.1	gi|408403183|ref|YP_006861166.1|	-	0.011	15.3	0.9	0.028	14.0	0.6	1.7	1	0	0	1	1	1	0	TPR	repeat
AAA_18	PF13238.1	gi|408403183|ref|YP_006861166.1|	-	0.012	15.9	0.0	0.025	14.8	0.0	1.7	1	1	0	1	1	1	0	AAA	domain
RNA_helicase	PF00910.17	gi|408403183|ref|YP_006861166.1|	-	0.012	15.7	0.0	0.1	12.8	0.0	2.5	3	0	0	3	3	2	0	RNA	helicase
Mg_chelatase	PF01078.16	gi|408403183|ref|YP_006861166.1|	-	0.019	14.1	0.0	0.043	12.9	0.0	1.5	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
KAP_NTPase	PF07693.9	gi|408403183|ref|YP_006861166.1|	-	0.022	13.7	0.0	0.22	10.4	0.0	2.0	1	1	1	2	2	2	0	KAP	family	P-loop	domain
Arch_ATPase	PF01637.13	gi|408403183|ref|YP_006861166.1|	-	0.075	12.7	0.0	0.56	9.8	0.0	2.0	1	1	1	2	2	2	0	Archaeal	ATPase
KaiC	PF06745.8	gi|408403183|ref|YP_006861166.1|	-	0.099	11.7	0.0	1.2	8.2	0.0	2.5	1	1	1	2	2	2	0	KaiC
ABC_tran	PF00005.22	gi|408403183|ref|YP_006861166.1|	-	0.11	12.8	0.1	0.69	10.2	0.0	2.1	2	0	0	2	2	2	0	ABC	transporter
PhoH	PF02562.11	gi|408403183|ref|YP_006861166.1|	-	0.11	11.7	0.1	0.21	10.8	0.1	1.4	1	0	0	1	1	1	0	PhoH-like	protein
AAA_28	PF13521.1	gi|408403183|ref|YP_006861166.1|	-	0.14	12.0	0.0	0.26	11.2	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
Pyrophosphatase	PF00719.14	gi|408403184|ref|YP_006861167.1|	-	1.3e-55	187.1	0.0	1.5e-55	186.8	0.0	1.0	1	0	0	1	1	1	1	Inorganic	pyrophosphatase
OrfB_IS605	PF01385.14	gi|408403185|ref|YP_006861168.1|	-	4.3e-07	29.5	0.3	5e-07	29.3	0.2	1.1	1	0	0	1	1	1	1	Probable	transposase
SNF2_N	PF00176.18	gi|408403185|ref|YP_006861168.1|	-	0.031	13.0	0.1	0.034	12.9	0.1	1.1	1	0	0	1	1	1	0	SNF2	family	N-terminal	domain
OrfB_Zn_ribbon	PF07282.6	gi|408403186|ref|YP_006861169.1|	-	3.2e-23	81.1	0.9	4.7e-23	80.6	0.2	1.6	2	0	0	2	2	2	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.14	gi|408403186|ref|YP_006861169.1|	-	1e-11	44.7	3.1	1.7e-11	43.9	2.2	1.3	1	0	0	1	1	1	1	Probable	transposase
TF_Zn_Ribbon	PF08271.7	gi|408403186|ref|YP_006861169.1|	-	0.004	16.4	0.3	0.056	12.7	0.0	2.2	2	0	0	2	2	2	1	TFIIB	zinc-binding
DZR	PF12773.2	gi|408403186|ref|YP_006861169.1|	-	0.0071	16.1	0.1	0.012	15.3	0.0	1.3	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-ribbon_3	PF13248.1	gi|408403186|ref|YP_006861169.1|	-	0.0097	15.0	1.7	0.044	12.9	1.3	1.9	1	1	1	2	2	2	2	zinc-ribbon	domain
HypA	PF01155.14	gi|408403186|ref|YP_006861169.1|	-	0.027	14.1	0.1	0.042	13.5	0.0	1.3	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
EH_Signature	PF15611.1	gi|408403186|ref|YP_006861169.1|	-	0.039	13.0	2.6	0.051	12.6	1.8	1.1	1	0	0	1	1	1	0	EH_Signature	domain
Prok-RING_1	PF14446.1	gi|408403186|ref|YP_006861169.1|	-	0.04	13.6	1.4	0.064	12.9	1.0	1.3	1	0	0	1	1	1	0	Prokaryotic	RING	finger	family	1
zinc_ribbon_2	PF13240.1	gi|408403186|ref|YP_006861169.1|	-	0.041	13.3	1.3	0.54	9.8	1.2	2.1	1	1	2	3	3	3	0	zinc-ribbon	domain
Ribosomal_L37e	PF01907.14	gi|408403186|ref|YP_006861169.1|	-	0.042	13.6	0.5	0.13	12.0	0.2	1.9	2	0	0	2	2	2	0	Ribosomal	protein	L37e
FYVE	PF01363.16	gi|408403186|ref|YP_006861169.1|	-	0.045	13.6	0.0	0.065	13.1	0.0	1.4	1	0	0	1	1	1	0	FYVE	zinc	finger
Nudix_N_2	PF14803.1	gi|408403186|ref|YP_006861169.1|	-	0.093	12.4	3.1	1.1	9.0	2.1	2.2	1	1	0	1	1	1	0	Nudix	N-terminal
zf-NADH-PPase	PF09297.6	gi|408403186|ref|YP_006861169.1|	-	0.11	12.0	2.3	0.22	11.0	1.6	1.6	1	1	0	1	1	1	0	NADH	pyrophosphatase	zinc	ribbon	domain
NinF	PF05810.7	gi|408403186|ref|YP_006861169.1|	-	0.15	11.8	0.4	0.27	11.0	0.3	1.4	1	0	0	1	1	1	0	NinF	protein
Rpr2	PF04032.11	gi|408403186|ref|YP_006861169.1|	-	0.51	10.2	4.6	8.3	6.3	1.2	3.2	1	1	1	2	2	2	0	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
TFIIS_C	PF01096.13	gi|408403186|ref|YP_006861169.1|	-	1.1	8.9	3.6	21	4.8	0.0	2.9	3	0	0	3	3	3	0	Transcription	factor	S-II	(TFIIS)
OrfB_IS605	PF01385.14	gi|408403187|ref|YP_006861170.1|	-	0.021	14.2	0.1	0.022	14.1	0.0	1.0	1	0	0	1	1	1	0	Probable	transposase
CART	PF06373.6	gi|408403188|ref|YP_006861171.1|	-	0.16	11.9	0.3	0.16	11.9	0.2	1.2	1	0	0	1	1	1	0	Cocaine	and	amphetamine	regulated	transcript	protein	(CART)
OrfB_IS605	PF01385.14	gi|408403189|ref|YP_006861172.1|	-	0.0018	17.6	0.1	0.0024	17.3	0.1	1.2	1	0	0	1	1	1	1	Probable	transposase
H_PPase	PF03030.11	gi|408403190|ref|YP_006861173.1|	-	5.5e-225	748.7	49.1	6.3e-225	748.5	34.0	1.0	1	0	0	1	1	1	1	Inorganic	H+	pyrophosphatase
tRNA-synt_1	PF00133.17	gi|408403193|ref|YP_006861176.1|	-	5.9e-134	447.3	0.1	8.1e-134	446.8	0.1	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(I,	L,	M	and	V)
Anticodon_1	PF08264.8	gi|408403193|ref|YP_006861176.1|	-	8.8e-31	106.7	0.2	3.2e-30	104.9	0.0	1.9	2	0	0	2	2	2	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1g	PF09334.6	gi|408403193|ref|YP_006861176.1|	-	4.9e-21	74.8	0.7	1.1e-08	34.2	0.0	3.7	3	1	0	3	3	3	3	tRNA	synthetases	class	I	(M)
tRNA-synt_1e	PF01406.14	gi|408403193|ref|YP_006861176.1|	-	1.9e-05	23.9	0.0	0.00023	20.4	0.0	2.2	2	0	0	2	2	2	1	tRNA	synthetases	class	I	(C)	catalytic	domain
tRNA-synt_1f	PF01921.13	gi|408403193|ref|YP_006861176.1|	-	0.0027	16.4	0.0	0.0064	15.2	0.0	1.6	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(K)
Lar_restr_allev	PF14354.1	gi|408403193|ref|YP_006861176.1|	-	0.013	15.8	0.2	0.63	10.3	0.0	2.5	2	0	0	2	2	2	0	Restriction	alleviation	protein	Lar
tRNA-synt_1b	PF00579.20	gi|408403193|ref|YP_006861176.1|	-	0.055	12.5	0.0	0.1	11.7	0.0	1.3	1	0	0	1	1	1	0	tRNA	synthetases	class	I	(W	and	Y)
Zn-ribbon_8	PF09723.5	gi|408403193|ref|YP_006861176.1|	-	0.23	11.4	2.0	2.8	7.9	0.0	3.1	3	0	0	3	3	3	0	Zinc	ribbon	domain
zf-ribbon_3	PF13248.1	gi|408403193|ref|YP_006861176.1|	-	3.9	6.8	4.8	38	3.6	0.1	3.2	3	0	0	3	3	3	0	zinc-ribbon	domain
DUF4135	PF13575.1	gi|408403194|ref|YP_006861177.1|	-	0.12	11.3	0.0	0.12	11.3	0.0	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4135)
DSPc	PF00782.15	gi|408403196|ref|YP_006861179.1|	-	8.2e-21	73.9	0.0	1e-20	73.6	0.0	1.1	1	0	0	1	1	1	1	Dual	specificity	phosphatase,	catalytic	domain
Y_phosphatase	PF00102.22	gi|408403196|ref|YP_006861179.1|	-	1.3e-09	37.8	0.0	1.5e-09	37.5	0.0	1.1	1	0	0	1	1	1	1	Protein-tyrosine	phosphatase
PTPlike_phytase	PF14566.1	gi|408403196|ref|YP_006861179.1|	-	2.3e-06	27.7	0.0	3.4e-06	27.1	0.0	1.3	1	0	0	1	1	1	1	Inositol	hexakisphosphate
Y_phosphatase3	PF13350.1	gi|408403196|ref|YP_006861179.1|	-	1.1e-05	25.7	0.0	1.5e-05	25.2	0.0	1.4	1	0	0	1	1	1	1	Tyrosine	phosphatase	family
Y_phosphatase2	PF03162.8	gi|408403196|ref|YP_006861179.1|	-	0.00037	19.9	0.0	0.00065	19.0	0.0	1.4	1	1	0	1	1	1	1	Tyrosine	phosphatase	family
CDKN3	PF05706.7	gi|408403196|ref|YP_006861179.1|	-	0.011	15.2	0.0	0.014	14.8	0.0	1.1	1	0	0	1	1	1	0	Cyclin-dependent	kinase	inhibitor	3	(CDKN3)
DUF1537	PF07005.6	gi|408403196|ref|YP_006861179.1|	-	0.051	13.2	0.0	0.063	12.9	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF1537
TF_Zn_Ribbon	PF08271.7	gi|408403197|ref|YP_006861180.1|	-	0.00022	20.4	1.4	0.00031	19.9	1.0	1.3	1	0	0	1	1	1	1	TFIIB	zinc-binding
OrfB_Zn_ribbon	PF07282.6	gi|408403197|ref|YP_006861180.1|	-	0.00075	19.1	2.0	0.0011	18.5	1.4	1.2	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
zf-ribbon_3	PF13248.1	gi|408403197|ref|YP_006861180.1|	-	0.00077	18.5	5.7	0.003	16.7	3.7	1.9	1	1	1	2	2	2	2	zinc-ribbon	domain
DUF2225	PF09986.4	gi|408403197|ref|YP_006861180.1|	-	0.0009	18.7	0.4	0.0041	16.5	0.0	1.8	1	1	1	2	2	2	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2225)
Ribosomal_S27e	PF01667.12	gi|408403197|ref|YP_006861180.1|	-	0.0027	17.1	0.7	0.0037	16.7	0.5	1.2	1	0	0	1	1	1	1	Ribosomal	protein	S27
zinc_ribbon_5	PF13719.1	gi|408403197|ref|YP_006861180.1|	-	0.0032	17.0	3.6	0.0095	15.4	2.5	1.7	1	1	0	1	1	1	1	zinc-ribbon	domain
HypA	PF01155.14	gi|408403197|ref|YP_006861180.1|	-	0.0037	16.9	0.3	0.004	16.8	0.2	1.1	1	0	0	1	1	1	1	Hydrogenase	expression/synthesis	hypA	family
zinc_ribbon_4	PF13717.1	gi|408403197|ref|YP_006861180.1|	-	0.0071	16.0	3.8	0.035	13.8	2.6	1.9	1	1	0	1	1	1	1	zinc-ribbon	domain
DUF2387	PF09526.5	gi|408403197|ref|YP_006861180.1|	-	0.011	15.6	1.6	0.015	15.1	1.1	1.3	1	1	0	1	1	1	0	Probable	metal-binding	protein	(DUF2387)
DZR	PF12773.2	gi|408403197|ref|YP_006861180.1|	-	0.012	15.4	2.2	0.019	14.7	1.6	1.4	1	1	0	1	1	1	0	Double	zinc	ribbon
zinc_ribbon_6	PF14599.1	gi|408403197|ref|YP_006861180.1|	-	0.018	14.8	0.8	0.024	14.4	0.6	1.2	1	0	0	1	1	1	0	Zinc-ribbon
DNA_RNApol_7kD	PF03604.8	gi|408403197|ref|YP_006861180.1|	-	0.022	14.2	3.4	0.045	13.2	2.4	1.5	1	1	0	1	1	1	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
CpXC	PF14353.1	gi|408403197|ref|YP_006861180.1|	-	0.026	14.4	2.1	1.5	8.7	0.1	2.1	1	1	1	2	2	2	0	CpXC	protein
Zn_ribbon_recom	PF13408.1	gi|408403197|ref|YP_006861180.1|	-	0.031	14.5	1.0	6.1	7.1	0.1	2.1	2	0	0	2	2	2	0	Recombinase	zinc	beta	ribbon	domain
Prok-RING_1	PF14446.1	gi|408403197|ref|YP_006861180.1|	-	0.035	13.8	1.3	0.046	13.4	0.9	1.2	1	0	0	1	1	1	0	Prokaryotic	RING	finger	family	1
IBR	PF01485.16	gi|408403197|ref|YP_006861180.1|	-	0.047	13.5	1.6	0.067	13.0	1.1	1.2	1	0	0	1	1	1	0	IBR	domain
zf-ISL3	PF14690.1	gi|408403197|ref|YP_006861180.1|	-	0.06	13.3	3.4	0.95	9.5	0.2	2.1	1	1	1	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
PhnA_Zn_Ribbon	PF08274.7	gi|408403197|ref|YP_006861180.1|	-	0.061	13.1	1.4	7.5	6.4	0.0	2.1	2	0	0	2	2	2	0	PhnA	Zinc-Ribbon
Mu-like_Com	PF10122.4	gi|408403197|ref|YP_006861180.1|	-	0.08	12.0	3.9	3.1	6.9	0.5	2.2	1	1	1	2	2	2	0	Mu-like	prophage	protein	Com
DUF329	PF03884.9	gi|408403197|ref|YP_006861180.1|	-	0.11	12.0	2.3	0.86	9.2	0.3	2.2	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF329)
Ogr_Delta	PF04606.7	gi|408403197|ref|YP_006861180.1|	-	0.12	12.0	2.0	0.73	9.5	0.2	2.1	2	0	0	2	2	2	0	Ogr/Delta-like	zinc	finger
zinc_ribbon_2	PF13240.1	gi|408403197|ref|YP_006861180.1|	-	0.12	11.8	8.6	1.1	8.8	6.0	2.1	1	1	0	1	1	1	0	zinc-ribbon	domain
Zn-ribbon_8	PF09723.5	gi|408403197|ref|YP_006861180.1|	-	0.13	12.2	5.4	0.73	9.8	3.8	1.9	1	1	0	1	1	1	0	Zinc	ribbon	domain
DUF164	PF02591.10	gi|408403197|ref|YP_006861180.1|	-	0.14	11.9	1.0	14	5.6	0.2	2.2	2	0	0	2	2	2	0	Putative	zinc	ribbon	domain
Mcm10	PF09332.6	gi|408403197|ref|YP_006861180.1|	-	0.15	11.4	0.2	0.15	11.4	0.1	1.1	1	0	0	1	1	1	0	Mcm10	replication	factor
DUF2082	PF09855.4	gi|408403197|ref|YP_006861180.1|	-	0.15	11.8	2.8	1.2	9.0	0.1	2.1	1	1	1	2	2	2	0	Nucleic-acid-binding	protein	containing	Zn-ribbon	domain	(DUF2082)
Elf1	PF05129.8	gi|408403197|ref|YP_006861180.1|	-	0.2	11.3	1.6	0.42	10.3	1.1	1.6	1	1	0	1	1	1	0	Transcription	elongation	factor	Elf1	like
Lar_restr_allev	PF14354.1	gi|408403197|ref|YP_006861180.1|	-	0.31	11.3	3.0	0.8	10.0	2.1	1.7	1	1	0	1	1	1	0	Restriction	alleviation	protein	Lar
YyzF	PF14116.1	gi|408403197|ref|YP_006861180.1|	-	0.36	10.8	3.3	3.4	7.6	0.1	2.2	1	1	1	2	2	2	0	YyzF-like	protein
zf-H2C2_2	PF13465.1	gi|408403197|ref|YP_006861180.1|	-	0.41	11.0	2.4	18	5.8	0.2	2.1	2	0	0	2	2	2	0	Zinc-finger	double	domain
A2L_zn_ribbon	PF08792.5	gi|408403197|ref|YP_006861180.1|	-	0.45	10.0	2.6	1.8	8.1	1.8	1.9	1	1	0	1	1	1	0	A2L	zinc	ribbon	domain
DUF35_N	PF12172.3	gi|408403197|ref|YP_006861180.1|	-	0.57	10.1	3.4	13	5.8	0.3	2.1	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
zf-HIT	PF04438.11	gi|408403197|ref|YP_006861180.1|	-	0.75	9.4	3.6	4.3	7.0	0.1	2.1	2	0	0	2	2	2	0	HIT	zinc	finger
UPF0547	PF10571.4	gi|408403197|ref|YP_006861180.1|	-	0.78	9.4	9.1	5.7	6.7	6.3	2.0	1	1	0	1	1	1	0	Uncharacterised	protein	family	UPF0547
Auto_anti-p27	PF06677.7	gi|408403197|ref|YP_006861180.1|	-	1.3	8.8	4.1	0.87	9.4	0.3	2.0	2	0	0	2	2	2	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
zf-C2H2	PF00096.21	gi|408403197|ref|YP_006861180.1|	-	3.1	8.3	4.6	32	5.1	0.3	2.2	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
Zn_Tnp_IS1595	PF12760.2	gi|408403197|ref|YP_006861180.1|	-	3.2	7.6	6.0	17	5.3	0.3	2.1	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
Ribosomal_S6e	PF01092.14	gi|408403198|ref|YP_006861181.1|	-	1.6e-18	66.5	0.9	2e-18	66.2	0.6	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S6e
GTP_EFTU	PF00009.22	gi|408403199|ref|YP_006861182.1|	-	3.9e-43	147.0	0.0	6e-43	146.4	0.0	1.3	1	0	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
eIF2_C	PF09173.6	gi|408403199|ref|YP_006861182.1|	-	2.5e-27	94.7	1.3	5e-27	93.7	0.3	2.0	2	0	0	2	2	2	1	Initiation	factor	eIF2	gamma,	C	terminal
GTP_EFTU_D2	PF03144.20	gi|408403199|ref|YP_006861182.1|	-	0.00045	20.2	0.3	0.0013	18.8	0.2	1.8	1	0	0	1	1	1	1	Elongation	factor	Tu	domain	2
MMR_HSR1	PF01926.18	gi|408403199|ref|YP_006861182.1|	-	0.00063	19.6	0.0	0.0016	18.3	0.0	1.8	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
AAA_23	PF13476.1	gi|408403199|ref|YP_006861182.1|	-	0.011	16.0	0.2	3.6	7.8	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
Dynamin_N	PF00350.18	gi|408403199|ref|YP_006861182.1|	-	0.033	14.0	0.0	1.2	8.9	0.0	3.0	1	1	0	1	1	1	0	Dynamin	family
NOB1_Zn_bind	PF08772.6	gi|408403199|ref|YP_006861182.1|	-	0.084	12.7	0.1	0.22	11.3	0.1	1.6	1	0	0	1	1	1	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
zf-ribbon_3	PF13248.1	gi|408403199|ref|YP_006861182.1|	-	1.7	7.9	8.3	2.9	7.2	5.7	1.4	1	0	0	1	1	1	0	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.6	gi|408403200|ref|YP_006861183.1|	-	3.3e-16	58.6	0.2	4.7e-16	58.2	0.2	1.2	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
Ribosomal_L37ae	PF01780.14	gi|408403200|ref|YP_006861183.1|	-	0.085	12.7	0.1	0.13	12.1	0.1	1.2	1	0	0	1	1	1	0	Ribosomal	L37ae	protein	family
HypA	PF01155.14	gi|408403200|ref|YP_006861183.1|	-	0.086	12.5	0.1	0.12	12.0	0.1	1.3	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
Lactamase_B_3	PF13483.1	gi|408403201|ref|YP_006861184.1|	-	1.4e-28	99.6	0.3	1.6e-28	99.4	0.2	1.1	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_2	PF12706.2	gi|408403201|ref|YP_006861184.1|	-	5.6e-19	68.4	0.1	7.2e-19	68.0	0.1	1.1	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.22	gi|408403201|ref|YP_006861184.1|	-	0.3	10.6	3.2	0.86	9.2	2.2	1.9	1	1	0	1	1	1	0	Metallo-beta-lactamase	superfamily
Rpr2	PF04032.11	gi|408403202|ref|YP_006861185.1|	-	0.31	10.9	2.1	0.47	10.3	1.5	1.4	1	1	0	1	1	1	0	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
Asn_synthase	PF00733.16	gi|408403205|ref|YP_006861188.1|	-	1.3e-19	70.6	0.0	2e-19	70.0	0.0	1.2	1	0	0	1	1	1	1	Asparagine	synthase
Glycos_transf_2	PF00535.21	gi|408403206|ref|YP_006861189.1|	-	3.1e-13	49.7	0.0	5.6e-13	48.9	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.1	gi|408403206|ref|YP_006861189.1|	-	8.1e-05	22.5	0.0	0.00028	20.7	0.0	1.7	1	1	1	2	2	2	1	Glycosyltransferase	like	family	2
Glyco_transf_21	PF13506.1	gi|408403206|ref|YP_006861189.1|	-	0.0094	15.2	0.0	0.014	14.6	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	21
Glyco_trans_2_3	PF13632.1	gi|408403206|ref|YP_006861189.1|	-	0.044	13.4	0.0	0.34	10.5	0.0	2.1	1	1	1	2	2	2	0	Glycosyl	transferase	family	group	2
Formyl_trans_C	PF02911.13	gi|408403207|ref|YP_006861190.1|	-	1.9e-20	72.8	0.0	3.6e-20	71.9	0.0	1.4	1	0	0	1	1	1	1	Formyl	transferase,	C-terminal	domain
Formyl_trans_N	PF00551.14	gi|408403207|ref|YP_006861190.1|	-	7.6e-18	64.6	0.0	2.6e-17	62.9	0.0	1.9	2	0	0	2	2	2	1	Formyl	transferase
IFP_35_N	PF07334.8	gi|408403207|ref|YP_006861190.1|	-	0.22	11.5	1.5	0.55	10.2	1.0	1.6	1	0	0	1	1	1	0	Interferon-induced	35	kDa	protein	(IFP	35)	N-terminus
DUF3801	PF12687.2	gi|408403207|ref|YP_006861190.1|	-	0.31	10.5	1.9	0.27	10.7	0.2	1.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3801)
Polysacc_deac_1	PF01522.16	gi|408403208|ref|YP_006861191.1|	-	0.0073	15.9	0.1	0.014	14.9	0.0	1.6	1	0	0	1	1	1	1	Polysaccharide	deacetylase
DUF1415	PF07209.7	gi|408403208|ref|YP_006861191.1|	-	0.15	11.7	1.2	0.6	9.8	0.1	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1415)
Glycos_transf_1	PF00534.15	gi|408403209|ref|YP_006861192.1|	-	4.7e-17	61.9	0.0	6.5e-17	61.4	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.1	gi|408403209|ref|YP_006861192.1|	-	3.4e-09	36.9	0.0	8.4e-09	35.6	0.0	1.6	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.1	gi|408403209|ref|YP_006861192.1|	-	2.3e-06	27.7	0.0	5.2e-06	26.6	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
DDE_Tnp_IS1595	PF12762.2	gi|408403210|ref|YP_006861193.1|	-	0.00028	20.7	0.0	0.00031	20.6	0.0	1.0	1	0	0	1	1	1	1	ISXO2-like	transposase	domain
Pox_T4_N	PF04491.7	gi|408403212|ref|YP_006861195.1|	-	0.0077	16.0	0.5	0.012	15.4	0.0	1.6	2	0	0	2	2	2	1	Poxvirus	T4	protein,	N	terminus
PspC	PF04024.7	gi|408403212|ref|YP_006861195.1|	-	0.047	13.1	0.0	0.065	12.7	0.0	1.2	1	0	0	1	1	1	0	PspC	domain
Methyltransf_11	PF08241.7	gi|408403214|ref|YP_006861197.1|	-	2.9e-21	75.7	0.1	8.9e-21	74.1	0.0	1.8	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|408403214|ref|YP_006861197.1|	-	1.3e-15	57.5	0.0	1.8e-15	57.0	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|408403214|ref|YP_006861197.1|	-	1.3e-15	57.3	0.0	1.7e-15	56.9	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|408403214|ref|YP_006861197.1|	-	3.4e-12	46.6	0.0	6.9e-12	45.7	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.13	gi|408403214|ref|YP_006861197.1|	-	9.5e-11	41.2	0.0	1.5e-10	40.5	0.0	1.2	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_25	PF13649.1	gi|408403214|ref|YP_006861197.1|	-	1.5e-08	34.8	0.1	5.5e-08	33.0	0.0	1.9	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|408403214|ref|YP_006861197.1|	-	3.5e-08	34.0	0.0	6.8e-08	33.0	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_8	PF05148.10	gi|408403214|ref|YP_006861197.1|	-	4.7e-07	29.6	0.0	7.1e-07	29.0	0.0	1.3	1	0	0	1	1	1	1	Hypothetical	methyltransferase
MetW	PF07021.7	gi|408403214|ref|YP_006861197.1|	-	1.1e-06	28.1	0.0	1.5e-06	27.6	0.0	1.2	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
MTS	PF05175.9	gi|408403214|ref|YP_006861197.1|	-	0.0003	20.2	0.0	0.00096	18.5	0.0	1.8	2	1	0	2	2	2	1	Methyltransferase	small	domain
Methyltransf_32	PF13679.1	gi|408403214|ref|YP_006861197.1|	-	0.0016	18.1	0.0	0.0024	17.5	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_29	PF03141.11	gi|408403214|ref|YP_006861197.1|	-	0.019	13.3	0.0	0.029	12.7	0.0	1.3	1	0	0	1	1	1	0	Putative	S-adenosyl-L-methionine-dependent	methyltransferase
p450	PF00067.17	gi|408403214|ref|YP_006861197.1|	-	0.052	12.0	0.0	0.088	11.3	0.0	1.3	1	0	0	1	1	1	0	Cytochrome	P450
Epimerase	PF01370.16	gi|408403215|ref|YP_006861198.1|	-	1.5e-43	148.9	0.1	2e-43	148.5	0.1	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
3Beta_HSD	PF01073.14	gi|408403215|ref|YP_006861198.1|	-	1.1e-14	53.7	0.9	1.4e-14	53.4	0.6	1.2	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
RmlD_sub_bind	PF04321.12	gi|408403215|ref|YP_006861198.1|	-	1.9e-12	46.6	0.1	2.6e-12	46.2	0.1	1.2	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
NAD_binding_4	PF07993.7	gi|408403215|ref|YP_006861198.1|	-	3.2e-11	42.6	0.9	3.9e-06	25.9	0.0	2.4	1	1	1	2	2	2	2	Male	sterility	protein
Polysacc_synt_2	PF02719.10	gi|408403215|ref|YP_006861198.1|	-	7.5e-10	38.1	0.1	5.7e-09	35.2	0.1	2.0	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
NAD_binding_10	PF13460.1	gi|408403215|ref|YP_006861198.1|	-	8.6e-09	35.6	0.0	2.3e-07	30.9	0.0	2.1	1	1	1	2	2	2	1	NADH(P)-binding
adh_short	PF00106.20	gi|408403215|ref|YP_006861198.1|	-	1.8e-06	28.0	0.0	8.5e-06	25.7	0.0	2.0	1	1	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.5	gi|408403215|ref|YP_006861198.1|	-	7.3e-05	22.5	0.2	0.0027	17.3	0.1	2.6	1	1	0	1	1	1	1	KR	domain
Epimerase_Csub	PF13950.1	gi|408403215|ref|YP_006861198.1|	-	0.00017	21.4	0.0	0.0049	16.7	0.0	2.3	2	0	0	2	2	2	1	UDP-glucose	4-epimerase	C-term	subunit
UDPG_MGDP_dh_N	PF03721.9	gi|408403215|ref|YP_006861198.1|	-	0.0025	17.2	0.3	0.34	10.2	0.0	2.6	2	1	0	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
NmrA	PF05368.8	gi|408403215|ref|YP_006861198.1|	-	0.0031	16.7	0.3	0.14	11.3	0.0	2.4	2	1	0	2	2	2	1	NmrA-like	family
NAD_binding_7	PF13241.1	gi|408403215|ref|YP_006861198.1|	-	0.0092	16.2	0.1	0.079	13.2	0.0	2.3	2	1	0	2	2	2	1	Putative	NAD(P)-binding
Glyco_transf_4	PF13439.1	gi|408403215|ref|YP_006861198.1|	-	0.018	14.8	0.0	0.058	13.1	0.0	1.9	1	1	1	2	2	2	0	Glycosyltransferase	Family	4
NAD_binding_2	PF03446.10	gi|408403215|ref|YP_006861198.1|	-	0.03	14.1	0.1	0.4	10.4	0.0	2.2	2	0	0	2	2	2	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
F420_oxidored	PF03807.12	gi|408403215|ref|YP_006861198.1|	-	0.037	14.4	0.1	2.9	8.3	0.0	2.5	2	0	0	2	2	2	0	NADP	oxidoreductase	coenzyme	F420-dependent
TrkA_N	PF02254.13	gi|408403215|ref|YP_006861198.1|	-	0.082	12.9	0.4	0.89	9.5	0.0	2.3	2	0	0	2	2	2	0	TrkA-N	domain
Glycos_transf_1	PF00534.15	gi|408403216|ref|YP_006861199.1|	-	4.3e-13	49.0	0.0	8.2e-13	48.1	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_2	PF13477.1	gi|408403216|ref|YP_006861199.1|	-	0.012	15.3	0.3	0.11	12.2	0.1	2.3	2	0	0	2	2	2	0	Glycosyl	transferase	4-like
Sterile	PF03015.14	gi|408403216|ref|YP_006861199.1|	-	0.061	13.5	0.4	3.6	7.9	0.0	2.4	2	0	0	2	2	2	0	Male	sterility	protein
Pro_isomerase	PF00160.16	gi|408403217|ref|YP_006861200.1|	-	9.3e-50	168.8	0.1	1.7e-49	167.9	0.1	1.4	1	0	0	1	1	1	1	Cyclophilin	type	peptidyl-prolyl	cis-trans	isomerase/CLD
STT3	PF02516.9	gi|408403217|ref|YP_006861200.1|	-	2e-43	149.1	33.2	4.8e-43	147.8	23.0	1.8	1	1	0	1	1	1	1	Oligosaccharyl	transferase	STT3	subunit
PMT_2	PF13231.1	gi|408403217|ref|YP_006861200.1|	-	1.3e-07	31.6	14.5	1.3e-07	31.6	10.0	3.1	2	1	2	4	4	4	1	Dolichyl-phosphate-mannose-protein	mannosyltransferase
CcoS	PF03597.10	gi|408403217|ref|YP_006861200.1|	-	0.13	11.7	3.1	2.7	7.5	0.0	3.6	2	0	0	2	2	2	0	Cytochrome	oxidase	maturation	protein	cbb3-type
ParBc	PF02195.13	gi|408403220|ref|YP_006861203.1|	-	3.7e-19	68.6	0.2	1.1e-18	67.1	0.0	1.9	2	0	0	2	2	2	1	ParB-like	nuclease	domain
KorB	PF08535.5	gi|408403220|ref|YP_006861203.1|	-	2.2e-07	30.9	0.1	6.9e-07	29.3	0.1	1.9	1	0	0	1	1	1	1	KorB	domain
DUF2770	PF10968.3	gi|408403220|ref|YP_006861203.1|	-	0.052	13.2	0.9	1	9.1	0.0	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2770)
DUF1389	PF07146.6	gi|408403220|ref|YP_006861203.1|	-	0.06	12.4	1.2	0.098	11.6	0.8	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1389)
HTH_5	PF01022.15	gi|408403220|ref|YP_006861203.1|	-	0.072	12.7	0.1	0.33	10.6	0.0	2.1	2	0	0	2	2	2	0	Bacterial	regulatory	protein,	arsR	family
DUF148	PF02520.12	gi|408403220|ref|YP_006861203.1|	-	0.075	12.8	3.5	0.31	10.8	1.5	2.5	1	1	1	2	2	2	0	Domain	of	unknown	function	DUF148
HTH_24	PF13412.1	gi|408403220|ref|YP_006861203.1|	-	0.096	12.0	6.2	3.5	7.0	0.1	3.6	4	0	0	4	4	4	0	Winged	helix-turn-helix	DNA-binding
ScdA_N	PF04405.9	gi|408403220|ref|YP_006861203.1|	-	0.12	11.7	0.0	0.28	10.6	0.0	1.6	1	0	0	1	1	1	0	Domain	of	Unknown	function	(DUF542)
H-kinase_dim	PF02895.9	gi|408403220|ref|YP_006861203.1|	-	1.5	9.2	4.4	2.9	8.2	0.1	2.9	4	1	0	4	4	4	0	Signal	transducing	histidine	kinase,	homodimeric	domain
HTH_24	PF13412.1	gi|408403221|ref|YP_006861204.1|	-	5.9e-05	22.3	1.3	0.21	10.9	0.0	2.2	2	0	0	2	2	2	2	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.1	gi|408403221|ref|YP_006861204.1|	-	0.0011	18.3	0.1	0.6	9.6	0.1	2.1	2	0	0	2	2	2	2	AsnC-type	helix-turn-helix	domain
DUF1192	PF06698.6	gi|408403221|ref|YP_006861204.1|	-	0.16	11.7	0.3	0.39	10.5	0.2	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1192)
SSF	PF00474.12	gi|408403222|ref|YP_006861205.1|	-	3.1e-29	101.8	39.8	6.4e-29	100.8	27.6	1.5	1	0	0	1	1	1	1	Sodium:solute	symporter	family
Usp	PF00582.21	gi|408403222|ref|YP_006861205.1|	-	8.1e-19	68.1	0.1	1.8e-18	67.0	0.1	1.6	1	0	0	1	1	1	1	Universal	stress	protein	family
NicO	PF03824.11	gi|408403223|ref|YP_006861206.1|	-	0.0002	20.7	0.3	0.00021	20.6	0.2	1.1	1	0	0	1	1	1	1	High-affinity	nickel-transport	protein
OrfB_IS605	PF01385.14	gi|408403224|ref|YP_006861207.1|	-	1.9e-07	30.7	2.8	2.4e-07	30.4	1.9	1.1	1	0	0	1	1	1	1	Probable	transposase
EH_Signature	PF15611.1	gi|408403224|ref|YP_006861207.1|	-	0.0028	16.7	2.6	0.0032	16.5	1.8	1.0	1	0	0	1	1	1	1	EH_Signature	domain
UT	PF03253.9	gi|408403226|ref|YP_006861209.1|	-	2.1e-50	171.3	35.1	2.5e-23	82.4	6.3	3.1	2	1	1	3	3	3	3	Urea	transporter
Urease_gamma	PF00547.13	gi|408403228|ref|YP_006861211.1|	-	5.2e-44	148.3	0.0	5.7e-44	148.1	0.0	1.0	1	0	0	1	1	1	1	Urease,	gamma	subunit
Urease_beta	PF00699.15	gi|408403229|ref|YP_006861212.1|	-	1.4e-41	140.3	0.0	1.7e-41	140.0	0.0	1.1	1	0	0	1	1	1	1	Urease	beta	subunit
Amidohydro_1	PF01979.15	gi|408403230|ref|YP_006861213.1|	-	2.5e-51	175.3	5.8	3.3e-51	174.9	4.0	1.1	1	0	0	1	1	1	1	Amidohydrolase	family
Urease_alpha	PF00449.15	gi|408403230|ref|YP_006861213.1|	-	6e-50	168.4	0.7	1.2e-49	167.4	0.5	1.6	1	0	0	1	1	1	1	Urease	alpha-subunit,	N-terminal	domain
Amidohydro_5	PF13594.1	gi|408403230|ref|YP_006861213.1|	-	4.4e-05	23.2	1.1	0.00021	21.0	0.7	2.3	2	0	0	2	2	2	1	Amidohydrolase
Amidohydro_3	PF07969.6	gi|408403230|ref|YP_006861213.1|	-	0.00012	21.4	1.3	0.00012	21.4	0.9	2.2	2	0	0	2	2	2	1	Amidohydrolase	family
Cpn60_TCP1	PF00118.19	gi|408403231|ref|YP_006861214.1|	-	1e-106	357.4	8.0	1.3e-106	357.1	5.6	1.0	1	0	0	1	1	1	1	TCP-1/cpn60	chaperonin	family
MCR_gamma	PF02240.11	gi|408403232|ref|YP_006861215.1|	-	0.067	12.3	0.0	0.093	11.8	0.0	1.3	1	0	0	1	1	1	0	Methyl-coenzyme	M	reductase	gamma	subunit
UreE_N	PF02814.10	gi|408403233|ref|YP_006861216.1|	-	3.9e-10	39.0	0.0	8.9e-10	37.9	0.0	1.6	1	0	0	1	1	1	1	UreE	urease	accessory	protein,	N-terminal	domain
UreE_C	PF05194.7	gi|408403233|ref|YP_006861216.1|	-	1.2e-05	25.2	0.1	2e-05	24.5	0.1	1.4	1	0	0	1	1	1	1	UreE	urease	accessory	protein,	C-terminal	domain
UreF	PF01730.11	gi|408403234|ref|YP_006861217.1|	-	1.8e-27	96.2	0.0	2.4e-27	95.8	0.0	1.1	1	0	0	1	1	1	1	UreF
cobW	PF02492.14	gi|408403235|ref|YP_006861218.1|	-	9.6e-34	116.3	0.0	1.1e-33	116.1	0.0	1.1	1	0	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
ArgK	PF03308.11	gi|408403235|ref|YP_006861218.1|	-	6.6e-10	38.2	1.8	1.8e-09	36.7	1.3	1.6	1	1	0	1	1	1	1	ArgK	protein
MobB	PF03205.9	gi|408403235|ref|YP_006861218.1|	-	8.6e-08	31.9	0.0	1.6e-07	31.1	0.0	1.5	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
NTPase_1	PF03266.10	gi|408403235|ref|YP_006861218.1|	-	0.00053	19.7	0.0	0.00091	18.9	0.0	1.4	1	0	0	1	1	1	1	NTPase
AAA_10	PF12846.2	gi|408403235|ref|YP_006861218.1|	-	0.0063	15.9	0.0	0.0081	15.6	0.0	1.3	1	0	0	1	1	1	1	AAA-like	domain
SRP54	PF00448.17	gi|408403235|ref|YP_006861218.1|	-	0.0082	15.6	0.0	0.018	14.5	0.0	1.5	2	0	0	2	2	2	1	SRP54-type	protein,	GTPase	domain
GTP_EFTU	PF00009.22	gi|408403235|ref|YP_006861218.1|	-	0.0094	15.3	0.1	3.5	7.0	0.0	2.8	2	1	1	3	3	3	1	Elongation	factor	Tu	GTP	binding	domain
LpxK	PF02606.9	gi|408403235|ref|YP_006861218.1|	-	0.02	13.8	0.0	0.028	13.3	0.0	1.2	1	0	0	1	1	1	0	Tetraacyldisaccharide-1-P	4'-kinase
ATP_bind_1	PF03029.12	gi|408403235|ref|YP_006861218.1|	-	0.054	13.0	0.1	0.089	12.3	0.1	1.3	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
AAA_30	PF13604.1	gi|408403235|ref|YP_006861218.1|	-	0.089	12.3	0.0	0.13	11.8	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
AAA_17	PF13207.1	gi|408403235|ref|YP_006861218.1|	-	0.11	13.3	0.0	0.64	10.8	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
UreD	PF01774.12	gi|408403236|ref|YP_006861219.1|	-	8.3e-48	162.6	0.0	1e-47	162.3	0.0	1.1	1	0	0	1	1	1	1	UreD	urease	accessory	protein
HTH_45	PF14947.1	gi|408403237|ref|YP_006861220.1|	-	0.0006	19.5	0.0	0.00076	19.2	0.0	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
Rrf2	PF02082.15	gi|408403237|ref|YP_006861220.1|	-	0.054	13.6	0.0	0.092	12.8	0.0	1.3	1	0	0	1	1	1	0	Transcriptional	regulator
Hyd_WA	PF06462.7	gi|408403237|ref|YP_006861220.1|	-	0.066	12.8	0.6	0.12	12.0	0.1	1.7	2	0	0	2	2	2	0	Propeller
HTH_Crp_2	PF13545.1	gi|408403237|ref|YP_006861220.1|	-	0.09	12.5	0.0	0.16	11.7	0.0	1.5	1	1	0	1	1	1	0	Crp-like	helix-turn-helix	domain
DUF2334	PF10096.4	gi|408403238|ref|YP_006861221.1|	-	0.084	12.2	0.0	0.098	12.0	0.0	1.0	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2334)
NicO	PF03824.11	gi|408403239|ref|YP_006861222.1|	-	0.018	14.3	28.6	0.16	11.3	19.8	2.4	1	1	0	1	1	1	0	High-affinity	nickel-transport	protein
DUF3754	PF12576.3	gi|408403239|ref|YP_006861222.1|	-	2.8	7.5	6.9	2.1	8.0	0.2	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3754)
DS	PF01916.12	gi|408403240|ref|YP_006861223.1|	-	1.2e-81	274.1	0.1	1.4e-81	273.9	0.0	1.0	1	0	0	1	1	1	1	Deoxyhypusine	synthase
Hpre_diP_synt_I	PF07456.6	gi|408403240|ref|YP_006861223.1|	-	0.057	13.2	0.0	0.11	12.3	0.0	1.4	1	0	0	1	1	1	0	Heptaprenyl	diphosphate	synthase	component	I
Na_H_Exchanger	PF00999.16	gi|408403241|ref|YP_006861224.1|	-	9e-13	47.4	5.8	9.3e-13	47.4	4.0	1.0	1	0	0	1	1	1	1	Sodium/hydrogen	exchanger	family
BTP	PF05232.7	gi|408403241|ref|YP_006861224.1|	-	2.3	8.0	7.8	2.7	7.8	1.4	2.1	2	0	0	2	2	2	0	Bacterial	Transmembrane	Pair	family
DUF4229	PF14012.1	gi|408403241|ref|YP_006861224.1|	-	2.9	7.8	6.1	0.67	9.9	0.2	2.6	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF4229)
Na_H_Exchanger	PF00999.16	gi|408403242|ref|YP_006861225.1|	-	1.4e-39	135.7	24.4	1.6e-39	135.5	16.9	1.0	1	0	0	1	1	1	1	Sodium/hydrogen	exchanger	family
DS	PF01916.12	gi|408403243|ref|YP_006861226.1|	-	2.2e-49	168.2	0.0	2.6e-49	167.9	0.0	1.1	1	0	0	1	1	1	1	Deoxyhypusine	synthase
DapH_N	PF08503.5	gi|408403244|ref|YP_006861227.1|	-	0.11	12.6	0.0	0.4	10.8	0.0	1.8	2	0	0	2	2	2	0	Tetrahydrodipicolinate	succinyltransferase	N-terminal
2TM	PF13239.1	gi|408403245|ref|YP_006861228.1|	-	0.025	14.6	0.0	0.032	14.2	0.0	1.3	1	0	0	1	1	1	0	2TM	domain
NAD_binding_1	PF00175.16	gi|408403246|ref|YP_006861229.1|	-	5.5e-09	36.5	0.0	7.9e-09	36.0	0.0	1.2	1	0	0	1	1	1	1	Oxidoreductase	NAD-binding	domain
LcrG	PF07216.7	gi|408403246|ref|YP_006861229.1|	-	0.028	14.4	0.0	0.031	14.3	0.0	1.1	1	0	0	1	1	1	0	LcrG	protein
DUF3412	PF11892.3	gi|408403246|ref|YP_006861229.1|	-	0.03	14.1	0.0	0.034	13.9	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3412)
DUF608	PF04685.8	gi|408403247|ref|YP_006861230.1|	-	1.4e-08	33.8	0.0	1.6e-08	33.6	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF608
GDE_C	PF06202.9	gi|408403247|ref|YP_006861230.1|	-	1.4e-06	27.2	0.1	0.00038	19.2	0.1	2.6	1	1	0	1	1	1	1	Amylo-alpha-1,6-glucosidase
Glyco_hydro_63	PF03200.11	gi|408403247|ref|YP_006861230.1|	-	0.029	12.2	0.1	0.17	9.6	0.0	1.9	2	0	0	2	2	2	0	Mannosyl	oligosaccharide	glucosidase
Bac_rhamnosid	PF05592.6	gi|408403247|ref|YP_006861230.1|	-	0.039	12.1	0.0	0.053	11.7	0.0	1.2	1	0	0	1	1	1	0	Bacterial	alpha-L-rhamnosidase
Trehalase	PF01204.13	gi|408403247|ref|YP_006861230.1|	-	0.096	11.3	0.2	0.5	8.9	0.0	1.8	1	1	1	2	2	2	0	Trehalase
zf-C2H2	PF00096.21	gi|408403248|ref|YP_006861231.1|	-	4e-05	23.6	0.3	5.3e-05	23.3	0.2	1.2	1	0	0	1	1	1	1	Zinc	finger,	C2H2	type
zf-C2H2_4	PF13894.1	gi|408403248|ref|YP_006861231.1|	-	0.00034	20.7	0.1	0.00046	20.3	0.1	1.2	1	0	0	1	1	1	1	C2H2-type	zinc	finger
Zn-ribbon_8	PF09723.5	gi|408403248|ref|YP_006861231.1|	-	0.0018	18.2	0.1	0.0024	17.7	0.1	1.3	1	0	0	1	1	1	1	Zinc	ribbon	domain
DUF629	PF04780.7	gi|408403248|ref|YP_006861231.1|	-	0.0099	14.4	0.1	0.0099	14.4	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF629)
zf-C2H2_2	PF12756.2	gi|408403248|ref|YP_006861231.1|	-	0.023	14.8	0.1	0.023	14.8	0.1	1.1	1	0	0	1	1	1	0	C2H2	type	zinc-finger	(2	copies)
zf-C2H2_6	PF13912.1	gi|408403248|ref|YP_006861231.1|	-	0.035	14.0	2.7	0.057	13.3	1.9	1.5	1	1	0	1	1	1	0	C2H2-type	zinc	finger
zf-H2C2_5	PF13909.1	gi|408403248|ref|YP_006861231.1|	-	0.061	13.5	0.2	0.093	13.0	0.2	1.3	1	0	0	1	1	1	0	C2H2-type	zinc-finger	domain
NinG	PF05766.7	gi|408403248|ref|YP_006861231.1|	-	0.072	12.8	0.1	0.076	12.7	0.1	1.0	1	0	0	1	1	1	0	Bacteriophage	Lambda	NinG	protein
zf-HIT	PF04438.11	gi|408403248|ref|YP_006861231.1|	-	0.076	12.6	0.1	0.094	12.3	0.1	1.1	1	0	0	1	1	1	0	HIT	zinc	finger
zf-met	PF12874.2	gi|408403248|ref|YP_006861231.1|	-	0.13	12.4	0.2	0.2	11.9	0.1	1.4	1	0	0	1	1	1	0	Zinc-finger	of	C2H2	type
DUF2757	PF10955.3	gi|408403248|ref|YP_006861231.1|	-	0.13	12.4	1.5	0.78	9.9	1.0	1.8	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2757)
NAD_binding_2	PF03446.10	gi|408403249|ref|YP_006861232.1|	-	6.1e-34	117.2	0.0	8.8e-34	116.6	0.0	1.2	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
6PGD	PF00393.14	gi|408403249|ref|YP_006861232.1|	-	2.8e-16	59.6	0.0	3.9e-16	59.1	0.0	1.2	1	0	0	1	1	1	1	6-phosphogluconate	dehydrogenase,	C-terminal	domain
2-Hacid_dh_C	PF02826.14	gi|408403249|ref|YP_006861232.1|	-	5e-05	22.5	0.0	7.4e-05	21.9	0.0	1.3	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
GFO_IDH_MocA	PF01408.17	gi|408403249|ref|YP_006861232.1|	-	0.0066	16.9	0.0	0.01	16.3	0.0	1.3	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
F420_oxidored	PF03807.12	gi|408403249|ref|YP_006861232.1|	-	0.012	16.0	0.0	0.02	15.3	0.0	1.4	1	0	0	1	1	1	0	NADP	oxidoreductase	coenzyme	F420-dependent
DUF4350	PF14258.1	gi|408403249|ref|YP_006861232.1|	-	0.026	14.7	0.0	0.11	12.7	0.0	1.9	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4350)
NAD_binding_11	PF14833.1	gi|408403249|ref|YP_006861232.1|	-	0.046	13.7	0.0	0.086	12.9	0.0	1.6	1	1	0	1	1	1	0	NAD-binding	of	NADP-dependent	3-hydroxyisobutyrate	dehydrogenase
ApbA	PF02558.11	gi|408403249|ref|YP_006861232.1|	-	0.073	12.5	0.0	0.15	11.4	0.0	1.6	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
NAD_binding_10	PF13460.1	gi|408403249|ref|YP_006861232.1|	-	0.12	12.3	0.0	0.18	11.7	0.0	1.3	1	0	0	1	1	1	0	NADH(P)-binding
Cupin_2	PF07883.6	gi|408403250|ref|YP_006861233.1|	-	2.8e-15	55.5	0.1	4.5e-15	54.8	0.0	1.4	1	0	0	1	1	1	1	Cupin	domain
Cupin_1	PF00190.17	gi|408403250|ref|YP_006861233.1|	-	4.5e-09	35.8	0.0	6.2e-09	35.4	0.0	1.2	1	0	0	1	1	1	1	Cupin
AraC_binding	PF02311.14	gi|408403250|ref|YP_006861233.1|	-	1.6e-07	31.0	0.1	2.7e-07	30.3	0.1	1.3	1	0	0	1	1	1	1	AraC-like	ligand	binding	domain
MannoseP_isomer	PF01050.13	gi|408403250|ref|YP_006861233.1|	-	6e-07	29.1	0.0	7.9e-07	28.8	0.0	1.1	1	0	0	1	1	1	1	Mannose-6-phosphate	isomerase
Cupin_3	PF05899.7	gi|408403250|ref|YP_006861233.1|	-	9.6e-06	24.8	0.1	2.5e-05	23.5	0.0	1.7	2	1	0	2	2	2	1	Protein	of	unknown	function	(DUF861)
ARD	PF03079.9	gi|408403250|ref|YP_006861233.1|	-	0.00067	19.6	0.0	0.00073	19.5	0.0	1.2	1	0	0	1	1	1	1	ARD/ARD'	family
CENP-C_C	PF11699.3	gi|408403250|ref|YP_006861233.1|	-	0.0026	17.7	0.0	0.0047	16.8	0.0	1.4	1	1	1	2	2	2	1	Mif2/CENP-C	like
Cupin_6	PF12852.2	gi|408403250|ref|YP_006861233.1|	-	0.022	14.4	0.0	0.028	14.0	0.0	1.1	1	0	0	1	1	1	0	Cupin
Pirin_C	PF05726.8	gi|408403250|ref|YP_006861233.1|	-	0.022	14.8	0.0	0.032	14.2	0.0	1.3	1	0	0	1	1	1	0	Pirin	C-terminal	cupin	domain
EutQ	PF06249.7	gi|408403250|ref|YP_006861233.1|	-	0.032	13.7	0.1	0.043	13.3	0.0	1.2	1	0	0	1	1	1	0	Ethanolamine	utilisation	protein	EutQ
Cupin_7	PF12973.2	gi|408403250|ref|YP_006861233.1|	-	0.036	13.8	0.0	0.054	13.3	0.0	1.3	1	0	0	1	1	1	0	ChrR	Cupin-like	domain
Ectoine_synth	PF06339.7	gi|408403250|ref|YP_006861233.1|	-	0.14	12.1	0.0	0.18	11.7	0.0	1.2	1	0	0	1	1	1	0	Ectoine	synthase
Cyclase	PF04199.8	gi|408403251|ref|YP_006861234.1|	-	3e-34	118.1	0.3	4.4e-34	117.6	0.2	1.2	1	0	0	1	1	1	1	Putative	cyclase
CPDase	PF07823.6	gi|408403251|ref|YP_006861234.1|	-	0.11	11.9	0.0	0.72	9.3	0.0	1.9	2	0	0	2	2	2	0	Cyclic	phosphodiesterase-like	protein
Rib_5-P_isom_A	PF06026.9	gi|408403252|ref|YP_006861235.1|	-	1.7e-50	170.7	0.0	2.1e-50	170.4	0.0	1.1	1	0	0	1	1	1	1	Ribose	5-phosphate	isomerase	A	(phosphoriboisomerase	A)
DeoRC	PF00455.17	gi|408403252|ref|YP_006861235.1|	-	0.022	14.3	0.1	1.9	8.0	0.0	2.1	1	1	1	2	2	2	0	DeoR	C	terminal	sensor	domain
Sugar-bind	PF04198.8	gi|408403252|ref|YP_006861235.1|	-	0.099	11.5	0.0	0.18	10.6	0.0	1.4	1	0	0	1	1	1	0	Putative	sugar-binding	domain
Bac_luciferase	PF00296.15	gi|408403253|ref|YP_006861236.1|	-	1.4e-58	198.5	0.2	1.5e-58	198.3	0.2	1.0	1	0	0	1	1	1	1	Luciferase-like	monooxygenase
LigT_PEase	PF02834.11	gi|408403254|ref|YP_006861237.1|	-	8.7e-25	86.5	0.0	4.8e-14	52.1	0.0	2.1	2	0	0	2	2	2	2	LigT	like	Phosphoesterase
2_5_RNA_ligase2	PF13563.1	gi|408403254|ref|YP_006861237.1|	-	4.2e-13	49.2	0.0	6.7e-13	48.6	0.0	1.3	1	1	0	1	1	1	1	2'-5'	RNA	ligase	superfamily
AKAP7_NLS	PF10469.4	gi|408403254|ref|YP_006861237.1|	-	3.9e-12	46.3	0.0	4.8e-12	46.0	0.0	1.1	1	0	0	1	1	1	1	AKAP7	2'5'	RNA	ligase-like	domain
tRNA_NucTransf2	PF09249.6	gi|408403255|ref|YP_006861238.1|	-	2.4e-37	127.2	0.0	5.6e-37	126.1	0.0	1.6	1	0	0	1	1	1	1	tRNA	nucleotidyltransferase,	second	domain
NTP_transf_2	PF01909.18	gi|408403255|ref|YP_006861238.1|	-	1.3e-06	28.5	0.0	4.5e-06	26.9	0.0	1.9	1	1	0	1	1	1	1	Nucleotidyltransferase	domain
RIO1	PF01163.17	gi|408403256|ref|YP_006861239.1|	-	1.4e-05	24.5	0.0	2.9e-05	23.5	0.0	1.5	1	0	0	1	1	1	1	RIO1	family
HhH-GPD	PF00730.20	gi|408403257|ref|YP_006861240.1|	-	1.1e-20	73.9	0.1	5.9e-20	71.5	0.0	1.9	2	0	0	2	2	2	1	HhH-GPD	superfamily	base	excision	DNA	repair	protein
HHH	PF00633.18	gi|408403257|ref|YP_006861240.1|	-	0.039	13.6	0.0	0.12	12.0	0.0	1.9	1	0	0	1	1	1	0	Helix-hairpin-helix	motif
TFIIE_alpha	PF02002.12	gi|408403258|ref|YP_006861241.1|	-	0.014	14.8	3.6	0.023	14.2	0.3	2.5	1	1	2	3	3	3	0	TFIIE	alpha	subunit
Ribosomal_L2_C	PF03947.13	gi|408403259|ref|YP_006861242.1|	-	6.2e-36	123.0	1.7	1e-35	122.3	1.2	1.3	1	0	0	1	1	1	1	Ribosomal	Proteins	L2,	C-terminal	domain
Ribosomal_L2	PF00181.18	gi|408403259|ref|YP_006861242.1|	-	2.7e-10	40.0	0.1	6.4e-10	38.8	0.1	1.7	1	0	0	1	1	1	1	Ribosomal	Proteins	L2,	RNA	binding	domain
Glyoxalase_2	PF12681.2	gi|408403260|ref|YP_006861243.1|	-	9.4e-18	64.8	0.0	1.2e-17	64.5	0.0	1.1	1	0	0	1	1	1	1	Glyoxalase-like	domain
Glyoxalase	PF00903.20	gi|408403260|ref|YP_006861243.1|	-	1.1e-11	44.7	0.0	2e-11	43.9	0.0	1.4	1	1	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_4	PF13669.1	gi|408403260|ref|YP_006861243.1|	-	0.0017	18.3	0.0	0.0028	17.6	0.0	1.4	1	1	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
NIR_SIR	PF01077.17	gi|408403261|ref|YP_006861244.1|	-	1.7e-43	147.7	0.1	1.4e-29	102.4	0.0	2.5	3	0	0	3	3	3	2	Nitrite	and	sulphite	reductase	4Fe-4S	domain
NIR_SIR_ferr	PF03460.12	gi|408403261|ref|YP_006861244.1|	-	1.5e-32	110.9	0.0	7.1e-19	67.2	0.0	2.6	2	0	0	2	2	2	2	Nitrite/Sulfite	reductase	ferredoxin-like	half	domain
Rhodanese	PF00581.15	gi|408403262|ref|YP_006861245.1|	-	3e-36	124.1	0.0	2.4e-17	63.2	0.0	2.2	2	0	0	2	2	2	2	Rhodanese-like	domain
Arch_ATPase	PF01637.13	gi|408403262|ref|YP_006861245.1|	-	0.062	12.9	0.0	4	7.0	0.0	2.2	2	0	0	2	2	2	0	Archaeal	ATPase
AAA_18	PF13238.1	gi|408403263|ref|YP_006861246.1|	-	3e-16	59.9	0.0	4.5e-16	59.3	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_17	PF13207.1	gi|408403263|ref|YP_006861246.1|	-	1.1e-10	42.4	0.0	1.9e-10	41.6	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
ADK	PF00406.17	gi|408403263|ref|YP_006861246.1|	-	0.00024	21.0	0.3	0.00034	20.5	0.2	1.3	1	1	0	1	1	1	1	Adenylate	kinase
AAA_33	PF13671.1	gi|408403263|ref|YP_006861246.1|	-	0.0003	20.6	0.1	0.00094	19.0	0.1	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_28	PF13521.1	gi|408403263|ref|YP_006861246.1|	-	0.00052	20.0	0.0	0.00084	19.3	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
APS_kinase	PF01583.15	gi|408403263|ref|YP_006861246.1|	-	0.0024	17.5	0.0	0.0048	16.5	0.0	1.5	1	0	0	1	1	1	1	Adenylylsulphate	kinase
CoaE	PF01121.15	gi|408403263|ref|YP_006861246.1|	-	0.0029	17.0	0.3	0.013	14.9	0.1	2.0	1	1	0	2	2	2	1	Dephospho-CoA	kinase
AAA_22	PF13401.1	gi|408403263|ref|YP_006861246.1|	-	0.0043	17.1	0.1	0.007	16.5	0.1	1.5	1	1	0	1	1	1	1	AAA	domain
ArgK	PF03308.11	gi|408403263|ref|YP_006861246.1|	-	0.0081	14.9	0.2	0.019	13.7	0.1	1.6	2	0	0	2	2	2	1	ArgK	protein
NTPase_1	PF03266.10	gi|408403263|ref|YP_006861246.1|	-	0.0084	15.8	0.2	0.02	14.5	0.1	1.7	1	1	0	1	1	1	1	NTPase
ABC_tran	PF00005.22	gi|408403263|ref|YP_006861246.1|	-	0.01	16.1	0.0	0.026	14.8	0.0	1.7	1	1	0	1	1	1	0	ABC	transporter
AAA_16	PF13191.1	gi|408403263|ref|YP_006861246.1|	-	0.012	15.6	0.1	0.015	15.2	0.1	1.5	1	1	0	1	1	1	0	AAA	ATPase	domain
Torsin	PF06309.6	gi|408403263|ref|YP_006861246.1|	-	0.018	14.9	0.0	0.073	12.9	0.0	1.9	1	1	1	2	2	2	0	Torsin
Zeta_toxin	PF06414.7	gi|408403263|ref|YP_006861246.1|	-	0.02	13.9	0.1	0.041	12.9	0.0	1.5	2	0	0	2	2	2	0	Zeta	toxin
KTI12	PF08433.5	gi|408403263|ref|YP_006861246.1|	-	0.024	13.8	0.1	0.066	12.4	0.0	1.7	2	0	0	2	2	2	0	Chromatin	associated	protein	KTI12
RNA_binding	PF01877.12	gi|408403264|ref|YP_006861247.1|	-	1.1e-14	54.4	0.0	2e-14	53.6	0.0	1.4	1	1	0	1	1	1	1	RNA	binding
zf-ISL3	PF14690.1	gi|408403265|ref|YP_006861248.1|	-	0.0061	16.5	3.6	0.12	12.4	0.2	2.1	2	0	0	2	2	2	1	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
GFA	PF04828.9	gi|408403265|ref|YP_006861248.1|	-	0.0081	16.0	2.2	0.015	15.1	1.5	1.6	1	1	0	1	1	1	1	Glutathione-dependent	formaldehyde-activating	enzyme
DZR	PF12773.2	gi|408403265|ref|YP_006861248.1|	-	0.013	15.3	3.2	0.025	14.3	2.2	1.5	1	1	0	1	1	1	0	Double	zinc	ribbon
HypA	PF01155.14	gi|408403265|ref|YP_006861248.1|	-	0.013	15.1	1.0	0.014	15.1	0.7	1.0	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
zf-IS66	PF13005.2	gi|408403265|ref|YP_006861248.1|	-	0.017	15.0	0.9	0.073	13.0	0.1	1.9	2	0	0	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
Rad50_zn_hook	PF04423.9	gi|408403265|ref|YP_006861248.1|	-	0.017	14.5	0.3	0.024	14.1	0.2	1.4	1	1	0	1	1	1	0	Rad50	zinc	hook	motif
zf-NADH-PPase	PF09297.6	gi|408403265|ref|YP_006861248.1|	-	0.024	14.1	0.2	0.044	13.3	0.1	1.5	1	0	0	1	1	1	0	NADH	pyrophosphatase	zinc	ribbon	domain
Auto_anti-p27	PF06677.7	gi|408403265|ref|YP_006861248.1|	-	0.025	14.3	1.4	0.3	10.8	0.1	2.2	2	0	0	2	2	2	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
zinc_ribbon_2	PF13240.1	gi|408403265|ref|YP_006861248.1|	-	0.041	13.3	2.5	0.39	10.2	1.7	2.1	1	1	0	1	1	1	0	zinc-ribbon	domain
ADK_lid	PF05191.9	gi|408403265|ref|YP_006861248.1|	-	0.043	13.4	1.4	0.13	11.9	0.1	1.9	2	0	0	2	2	2	0	Adenylate	kinase,	active	site	lid
Cys_rich_KTR	PF14205.1	gi|408403265|ref|YP_006861248.1|	-	0.05	13.0	3.7	3	7.3	0.3	2.1	2	0	0	2	2	2	0	Cysteine-rich	KTR
TF_Zn_Ribbon	PF08271.7	gi|408403265|ref|YP_006861248.1|	-	0.056	12.7	1.8	1.1	8.6	0.3	2.1	2	0	0	2	2	2	0	TFIIB	zinc-binding
DUF3795	PF12675.2	gi|408403265|ref|YP_006861248.1|	-	0.063	13.4	2.3	0.065	13.4	1.6	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3795)
DNA_ligase_ZBD	PF03119.11	gi|408403265|ref|YP_006861248.1|	-	0.087	12.5	0.1	0.21	11.3	0.1	1.7	1	0	0	1	1	1	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
zf-Di19	PF05605.7	gi|408403265|ref|YP_006861248.1|	-	0.095	12.8	3.4	0.26	11.4	0.2	2.0	1	1	1	2	2	2	0	Drought	induced	19	protein	(Di19),	zinc-binding
Prok-RING_1	PF14446.1	gi|408403265|ref|YP_006861248.1|	-	0.18	11.5	2.0	2.8	7.7	0.1	2.1	2	0	0	2	2	2	0	Prokaryotic	RING	finger	family	1
zf-ribbon_3	PF13248.1	gi|408403265|ref|YP_006861248.1|	-	0.22	10.8	4.8	3	7.1	3.3	2.1	1	1	0	1	1	1	0	zinc-ribbon	domain
zinc_ribbon_4	PF13717.1	gi|408403265|ref|YP_006861248.1|	-	0.26	10.9	4.1	1.5	8.5	2.8	1.9	1	1	0	1	1	1	0	zinc-ribbon	domain
Zn-ribbon_8	PF09723.5	gi|408403265|ref|YP_006861248.1|	-	0.32	10.9	3.4	2.7	8.0	2.3	2.0	1	1	0	1	1	1	0	Zinc	ribbon	domain
Prim_Zn_Ribbon	PF08273.7	gi|408403265|ref|YP_006861248.1|	-	0.34	11.0	1.7	4.9	7.3	0.2	2.1	2	0	0	2	2	2	0	Zinc-binding	domain	of	primase-helicase
YdjO	PF14169.1	gi|408403265|ref|YP_006861248.1|	-	0.41	10.1	3.4	1.3	8.5	0.1	2.1	1	1	1	2	2	2	0	Cold-inducible	protein	YdjO
zinc_ribbon_5	PF13719.1	gi|408403265|ref|YP_006861248.1|	-	0.49	10.0	4.6	3.4	7.3	3.2	2.0	1	1	0	1	1	1	0	zinc-ribbon	domain
DUF4451	PF14616.1	gi|408403265|ref|YP_006861248.1|	-	0.57	9.9	3.1	1.2	8.8	0.9	1.8	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4451)
DUF2072	PF09845.4	gi|408403265|ref|YP_006861248.1|	-	0.65	9.9	3.1	1.2	9.0	2.2	1.5	1	1	0	1	1	1	0	Zn-ribbon	containing	protein	(DUF2072)
zf-C3HC4_3	PF13920.1	gi|408403265|ref|YP_006861248.1|	-	0.69	9.6	4.2	1.5	8.5	2.9	1.6	1	1	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
zf-RING_5	PF14634.1	gi|408403265|ref|YP_006861248.1|	-	0.81	9.4	4.5	1.9	8.2	3.1	1.6	1	1	0	1	1	1	0	zinc-RING	finger	domain
DUF2387	PF09526.5	gi|408403265|ref|YP_006861248.1|	-	1.6	8.6	6.5	0.41	10.5	0.5	2.0	1	1	1	2	2	2	0	Probable	metal-binding	protein	(DUF2387)
zf-RanBP	PF00641.13	gi|408403265|ref|YP_006861248.1|	-	2.7	7.1	5.7	5	6.3	0.4	2.1	2	0	0	2	2	2	0	Zn-finger	in	Ran	binding	protein	and	others
ABC_tran	PF00005.22	gi|408403266|ref|YP_006861249.1|	-	3.7e-32	111.4	0.0	6e-32	110.8	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|408403266|ref|YP_006861249.1|	-	1.3e-11	45.0	0.0	9.1e-08	32.3	0.0	2.2	1	1	1	2	2	2	2	AAA	domain
AAA_15	PF13175.1	gi|408403266|ref|YP_006861249.1|	-	6.4e-05	22.1	0.1	0.0075	15.3	0.0	2.2	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_29	PF13555.1	gi|408403266|ref|YP_006861249.1|	-	8.9e-05	21.9	0.3	0.00017	21.0	0.2	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_22	PF13401.1	gi|408403266|ref|YP_006861249.1|	-	0.00019	21.5	0.1	0.00056	20.0	0.1	1.7	1	1	0	1	1	1	1	AAA	domain
AAA	PF00004.24	gi|408403266|ref|YP_006861249.1|	-	0.001	19.2	0.0	0.011	15.8	0.0	2.6	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF4162	PF13732.1	gi|408403266|ref|YP_006861249.1|	-	0.0011	19.4	0.0	0.0023	18.3	0.0	1.6	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4162)
AAA_23	PF13476.1	gi|408403266|ref|YP_006861249.1|	-	0.0017	18.6	0.0	0.0029	17.9	0.0	1.5	2	0	0	2	2	2	1	AAA	domain
AAA_14	PF13173.1	gi|408403266|ref|YP_006861249.1|	-	0.005	16.7	0.0	3	7.7	0.0	3.2	3	0	0	3	3	3	1	AAA	domain
SRP54	PF00448.17	gi|408403266|ref|YP_006861249.1|	-	0.0067	15.8	0.1	0.012	15.0	0.1	1.4	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
Zeta_toxin	PF06414.7	gi|408403266|ref|YP_006861249.1|	-	0.022	13.8	0.0	0.81	8.7	0.0	2.4	2	0	0	2	2	2	0	Zeta	toxin
AAA_19	PF13245.1	gi|408403266|ref|YP_006861249.1|	-	0.048	13.4	0.1	0.11	12.3	0.0	1.6	1	0	0	1	1	1	0	Part	of	AAA	domain
SbcCD_C	PF13558.1	gi|408403266|ref|YP_006861249.1|	-	0.059	13.2	0.0	0.16	11.9	0.0	1.8	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
AAA_30	PF13604.1	gi|408403266|ref|YP_006861249.1|	-	0.13	11.8	0.0	0.82	9.2	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
ABC2_membrane	PF01061.19	gi|408403267|ref|YP_006861250.1|	-	4e-39	133.9	18.1	5.3e-39	133.5	12.5	1.2	1	0	0	1	1	1	1	ABC-2	type	transporter
ABC2_membrane_3	PF12698.2	gi|408403267|ref|YP_006861250.1|	-	4.6e-16	58.8	25.1	4.6e-16	58.8	17.4	1.5	1	1	1	2	2	2	1	ABC-2	family	transporter	protein
ABC2_membrane_4	PF12730.2	gi|408403267|ref|YP_006861250.1|	-	9.1e-09	34.8	21.2	1.1e-08	34.5	14.7	1.1	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_2	PF12679.2	gi|408403267|ref|YP_006861250.1|	-	5.5e-07	28.7	20.0	2e-06	26.9	13.9	1.8	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
GcpE	PF04551.9	gi|408403268|ref|YP_006861251.1|	-	0.092	11.5	0.0	0.092	11.5	0.0	1.0	1	0	0	1	1	1	0	GcpE	protein
End3	PF12761.2	gi|408403271|ref|YP_006861254.1|	-	0.048	13.3	0.5	0.056	13.0	0.4	1.1	1	0	0	1	1	1	0	Actin	cytoskeleton-regulatory	complex	protein	END3
Iron_permease	PF04120.7	gi|408403271|ref|YP_006861254.1|	-	0.06	12.9	0.1	0.07	12.7	0.1	1.1	1	0	0	1	1	1	0	Low	affinity	iron	permease
GABP-alpha	PF11620.3	gi|408403271|ref|YP_006861254.1|	-	0.13	12.2	0.2	0.18	11.7	0.1	1.2	1	0	0	1	1	1	0	GA-binding	protein	alpha	chain
Vps36_ESCRT-II	PF11605.3	gi|408403275|ref|YP_006861258.1|	-	0.00026	20.7	0.0	0.0003	20.5	0.0	1.1	1	0	0	1	1	1	1	Vacuolar	protein	sorting	protein	36	Vps36
GRAM	PF02893.15	gi|408403275|ref|YP_006861258.1|	-	0.0044	16.4	0.0	0.0057	16.1	0.0	1.3	1	0	0	1	1	1	1	GRAM	domain
bPH_3	PF14470.1	gi|408403275|ref|YP_006861258.1|	-	0.019	15.2	0.0	0.022	14.9	0.0	1.2	1	0	0	1	1	1	0	Bacterial	PH	domain
Antitoxin-MazE	PF04014.13	gi|408403277|ref|YP_006861260.1|	-	0.0042	16.7	0.1	0.01	15.5	0.0	1.8	1	1	0	1	1	1	1	Antidote-toxin	recognition	MazE
MotA_activ	PF09114.5	gi|408403277|ref|YP_006861260.1|	-	0.063	13.0	0.0	0.068	12.9	0.0	1.2	1	0	0	1	1	1	0	Transcription	factor	MotA,	activation	domain
DUF4095	PF13338.1	gi|408403278|ref|YP_006861261.1|	-	1.4e-20	73.7	0.0	2.2e-20	73.0	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4095)
MarR_2	PF12802.2	gi|408403278|ref|YP_006861261.1|	-	0.11	12.2	0.0	0.2	11.3	0.0	1.4	1	0	0	1	1	1	0	MarR	family
DUF1814	PF08843.6	gi|408403279|ref|YP_006861262.1|	-	2.6e-12	47.0	0.1	3.1e-12	46.7	0.1	1.2	1	0	0	1	1	1	1	Nucleotidyl	transferase	of	unknown	function	(DUF1814)
DUF1383	PF07134.6	gi|408403279|ref|YP_006861262.1|	-	0.095	11.5	0.0	0.12	11.2	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1383)
DUF1814	PF08843.6	gi|408403280|ref|YP_006861263.1|	-	6.2e-16	58.8	0.1	6.9e-16	58.7	0.0	1.0	1	0	0	1	1	1	1	Nucleotidyl	transferase	of	unknown	function	(DUF1814)
PrgI	PF12666.2	gi|408403281|ref|YP_006861264.1|	-	0.0044	17.1	0.6	0.007	16.4	0.4	1.2	1	0	0	1	1	1	1	PrgI	family	protein
DUF2635	PF10948.3	gi|408403281|ref|YP_006861264.1|	-	0.043	13.1	0.0	0.096	12.0	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2635)
AAA_10	PF12846.2	gi|408403284|ref|YP_006861267.1|	-	7.4e-29	101.1	0.1	5.1e-25	88.5	0.0	2.0	1	1	1	2	2	2	2	AAA-like	domain
TraG-D_C	PF12696.2	gi|408403284|ref|YP_006861267.1|	-	0.0017	18.2	0.0	0.01	15.6	0.0	1.9	2	0	0	2	2	2	1	TraM	recognition	site	of	TraD	and	TraG
DUF87	PF01935.12	gi|408403284|ref|YP_006861267.1|	-	0.043	13.6	0.0	0.068	12.9	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	DUF87
DUF4443	PF14544.1	gi|408403285|ref|YP_006861268.1|	-	5.2e-06	26.3	0.0	8.6e-06	25.6	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4443)
HTH_45	PF14947.1	gi|408403285|ref|YP_006861268.1|	-	0.033	13.9	0.1	0.063	13.1	0.1	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix
DUF4093	PF13331.1	gi|408403285|ref|YP_006861268.1|	-	0.045	13.9	0.3	0.12	12.5	0.1	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4093)
HTH_24	PF13412.1	gi|408403285|ref|YP_006861268.1|	-	0.089	12.1	0.1	0.17	11.2	0.1	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
tRNA_bind	PF01588.15	gi|408403285|ref|YP_006861268.1|	-	0.1	12.4	0.2	1.5	8.7	0.1	2.3	2	0	0	2	2	2	0	Putative	tRNA	binding	domain
DUF4007	PF13182.1	gi|408403285|ref|YP_006861268.1|	-	0.12	11.1	0.0	0.18	10.5	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4007)
DUF1461	PF07314.6	gi|408403286|ref|YP_006861269.1|	-	0.012	15.3	1.0	0.013	15.2	0.7	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1461)
DUF308	PF03729.8	gi|408403286|ref|YP_006861269.1|	-	0.016	15.1	0.3	0.017	15.1	0.2	1.2	1	0	0	1	1	1	0	Short	repeat	of	unknown	function	(DUF308)
LHC	PF00556.15	gi|408403286|ref|YP_006861269.1|	-	0.018	14.8	0.1	0.026	14.3	0.0	1.4	1	0	0	1	1	1	0	Antenna	complex	alpha/beta	subunit
EpsG	PF14897.1	gi|408403286|ref|YP_006861269.1|	-	0.04	12.8	1.0	0.043	12.7	0.7	1.0	1	0	0	1	1	1	0	EpsG	family
DUF872	PF05915.7	gi|408403286|ref|YP_006861269.1|	-	0.052	13.4	0.2	0.052	13.4	0.2	1.1	1	0	0	1	1	1	0	Eukaryotic	protein	of	unknown	function	(DUF872)
DUF2116	PF09889.4	gi|408403286|ref|YP_006861269.1|	-	0.12	12.2	2.1	0.15	11.8	1.4	1.2	1	0	0	1	1	1	0	Uncharacterized	protein	containing	a	Zn-ribbon	(DUF2116)
DUF2905	PF11146.3	gi|408403286|ref|YP_006861269.1|	-	0.13	12.2	1.0	0.19	11.7	0.7	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2905)
DUF948	PF06103.6	gi|408403286|ref|YP_006861269.1|	-	0.14	12.0	0.5	0.2	11.5	0.3	1.3	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF948)
ATP1G1_PLM_MAT8	PF02038.11	gi|408403286|ref|YP_006861269.1|	-	1.3	8.1	5.8	1.7	7.7	4.0	1.4	1	1	0	1	1	1	0	ATP1G1/PLM/MAT8	family
ABC-3	PF00950.12	gi|408403287|ref|YP_006861270.1|	-	1.6e-70	237.3	33.0	1.8e-70	237.1	22.9	1.0	1	0	0	1	1	1	1	ABC	3	transport	family
FecCD	PF01032.13	gi|408403287|ref|YP_006861270.1|	-	2.1e-10	39.9	30.2	4.3e-10	38.9	21.0	1.6	1	1	0	1	1	1	1	FecCD	transport	family
Peptidase_M48	PF01435.13	gi|408403287|ref|YP_006861270.1|	-	0.18	11.3	5.0	0.91	9.0	0.1	2.5	2	0	0	2	2	2	0	Peptidase	family	M48
Chordopox_L2	PF05803.7	gi|408403287|ref|YP_006861270.1|	-	0.62	9.7	4.2	4.6	6.9	0.5	2.8	2	1	0	2	2	2	0	Chordopoxvirus	L2	protein
ABC_tran	PF00005.22	gi|408403288|ref|YP_006861271.1|	-	1.6e-26	93.2	0.0	2.9e-26	92.4	0.0	1.5	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|408403288|ref|YP_006861271.1|	-	3.8e-16	59.8	0.0	1.1e-09	38.6	0.0	2.1	2	0	0	2	2	2	2	AAA	domain
SbcCD_C	PF13558.1	gi|408403288|ref|YP_006861271.1|	-	8e-05	22.4	0.1	0.0021	17.9	0.0	2.2	1	1	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
AAA_15	PF13175.1	gi|408403288|ref|YP_006861271.1|	-	9.8e-05	21.5	0.3	0.073	12.1	0.0	2.1	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA_22	PF13401.1	gi|408403288|ref|YP_006861271.1|	-	0.00016	21.7	0.2	0.00053	20.1	0.1	1.8	1	1	0	1	1	1	1	AAA	domain
SMC_N	PF02463.14	gi|408403288|ref|YP_006861271.1|	-	0.00052	19.3	0.1	0.36	10.0	0.0	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
T2SE	PF00437.15	gi|408403288|ref|YP_006861271.1|	-	0.0021	16.9	0.0	0.0042	16.0	0.0	1.4	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_23	PF13476.1	gi|408403288|ref|YP_006861271.1|	-	0.0025	18.1	0.1	0.0045	17.3	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_25	PF13481.1	gi|408403288|ref|YP_006861271.1|	-	0.0026	17.2	0.0	0.0058	16.0	0.0	1.6	2	0	0	2	2	2	1	AAA	domain
AAA_18	PF13238.1	gi|408403288|ref|YP_006861271.1|	-	0.0071	16.6	0.2	0.02	15.1	0.1	2.0	1	1	0	1	1	1	1	AAA	domain
Arch_ATPase	PF01637.13	gi|408403288|ref|YP_006861271.1|	-	0.0084	15.8	0.2	0.062	12.9	0.1	1.9	2	0	0	2	2	2	1	Archaeal	ATPase
AAA_29	PF13555.1	gi|408403288|ref|YP_006861271.1|	-	0.0085	15.5	0.1	0.018	14.5	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.1	gi|408403288|ref|YP_006861271.1|	-	0.0098	15.8	0.0	0.031	14.2	0.0	1.7	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_17	PF13207.1	gi|408403288|ref|YP_006861271.1|	-	0.015	16.0	0.1	0.034	14.9	0.1	1.6	1	0	0	1	1	1	0	AAA	domain
NB-ARC	PF00931.17	gi|408403288|ref|YP_006861271.1|	-	0.015	14.1	0.8	0.098	11.4	0.2	2.0	2	0	0	2	2	2	0	NB-ARC	domain
AAA_19	PF13245.1	gi|408403288|ref|YP_006861271.1|	-	0.017	14.8	0.1	0.035	13.8	0.1	1.5	1	0	0	1	1	1	0	Part	of	AAA	domain
AAA_30	PF13604.1	gi|408403288|ref|YP_006861271.1|	-	0.017	14.6	0.0	0.048	13.2	0.0	1.6	2	0	0	2	2	2	0	AAA	domain
AAA	PF00004.24	gi|408403288|ref|YP_006861271.1|	-	0.025	14.7	0.3	1.4	9.1	0.1	2.2	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
NACHT	PF05729.7	gi|408403288|ref|YP_006861271.1|	-	0.043	13.4	0.1	0.095	12.3	0.1	1.5	1	0	0	1	1	1	0	NACHT	domain
AAA_10	PF12846.2	gi|408403288|ref|YP_006861271.1|	-	0.053	12.9	1.0	0.091	12.1	0.5	1.5	2	0	0	2	2	2	0	AAA-like	domain
DUF258	PF03193.11	gi|408403288|ref|YP_006861271.1|	-	0.054	12.6	0.0	0.074	12.2	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
MobB	PF03205.9	gi|408403288|ref|YP_006861271.1|	-	0.059	13.0	0.1	0.11	12.1	0.0	1.4	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
RecA	PF00154.16	gi|408403288|ref|YP_006861271.1|	-	0.067	12.2	0.0	0.095	11.7	0.0	1.2	1	0	0	1	1	1	0	recA	bacterial	DNA	recombination	protein
IstB_IS21	PF01695.12	gi|408403288|ref|YP_006861271.1|	-	0.1	11.9	2.0	2.5	7.4	0.0	2.2	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
MMR_HSR1	PF01926.18	gi|408403288|ref|YP_006861271.1|	-	0.11	12.4	0.0	0.71	9.8	0.0	2.1	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
Zot	PF05707.7	gi|408403288|ref|YP_006861271.1|	-	0.13	11.7	0.1	0.39	10.1	0.0	1.8	2	0	0	2	2	2	0	Zonular	occludens	toxin	(Zot)
Miro	PF08477.8	gi|408403288|ref|YP_006861271.1|	-	0.14	12.6	0.1	0.48	10.9	0.0	1.8	2	0	0	2	2	2	0	Miro-like	protein
G-alpha	PF00503.15	gi|408403288|ref|YP_006861271.1|	-	0.15	10.6	0.0	0.24	10.0	0.0	1.2	1	0	0	1	1	1	0	G-protein	alpha	subunit
cobW	PF02492.14	gi|408403288|ref|YP_006861271.1|	-	0.17	11.3	1.0	0.35	10.2	0.7	1.5	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_24	PF13479.1	gi|408403288|ref|YP_006861271.1|	-	0.19	11.2	0.6	0.45	10.0	0.3	1.6	2	0	0	2	2	2	0	AAA	domain
TroA	PF01297.12	gi|408403289|ref|YP_006861272.1|	-	9e-74	247.9	0.0	1.1e-73	247.7	0.0	1.1	1	0	0	1	1	1	1	Periplasmic	solute	binding	protein	family
PMP22_Claudin	PF00822.15	gi|408403290|ref|YP_006861273.1|	-	0.0027	17.3	6.1	0.0037	16.9	4.2	1.3	1	1	0	1	1	1	1	PMP-22/EMP/MP20/Claudin	family
DUF1435	PF07256.7	gi|408403290|ref|YP_006861273.1|	-	0.056	13.4	1.0	0.056	13.4	0.7	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1435)
DUF3592	PF12158.3	gi|408403290|ref|YP_006861273.1|	-	1.8	8.3	0.0	1.8	8.3	0.0	2.4	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3592)
P12	PF12669.2	gi|408403290|ref|YP_006861273.1|	-	2.3	8.4	0.0	2.3	8.4	0.0	3.6	3	1	1	4	4	4	0	Virus	attachment	protein	p12	family
Claudin_2	PF13903.1	gi|408403290|ref|YP_006861273.1|	-	2.4	7.7	16.2	1.4	8.5	7.8	2.4	1	1	2	3	3	3	0	PMP-22/EMP/MP20/Claudin	tight	junction
Amastin	PF07344.6	gi|408403290|ref|YP_006861273.1|	-	2.5	7.6	8.0	3.9	7.0	5.1	1.7	1	1	0	1	1	1	0	Amastin	surface	glycoprotein
DUF4064	PF13273.1	gi|408403290|ref|YP_006861273.1|	-	8.2	6.5	16.3	44	4.2	9.5	2.7	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF4064)
NicO	PF03824.11	gi|408403291|ref|YP_006861274.1|	-	1.4e-07	31.1	16.5	1.4e-07	31.1	11.4	1.8	2	1	0	2	2	2	1	High-affinity	nickel-transport	protein
Cyto_ox_2	PF02322.10	gi|408403291|ref|YP_006861274.1|	-	0.076	12.1	7.0	0.061	12.4	1.3	2.3	2	0	0	2	2	2	0	Cytochrome	oxidase	subunit	II
DUF2244	PF10003.4	gi|408403291|ref|YP_006861274.1|	-	0.1	11.9	0.0	0.1	11.9	0.0	2.4	2	1	1	3	3	3	0	Integral	membrane	protein	(DUF2244)
NikR_C	PF08753.6	gi|408403292|ref|YP_006861275.1|	-	8.8e-24	83.2	3.0	1.6e-23	82.3	1.6	1.7	2	0	0	2	2	2	1	NikR	C	terminal	nickel	binding	domain
SBP_bac_5	PF00496.17	gi|408403293|ref|YP_006861276.1|	-	3.9e-41	141.1	0.0	5e-41	140.7	0.0	1.0	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
ThiC	PF01964.13	gi|408403294|ref|YP_006861277.1|	-	1.7e-171	570.4	0.5	1.9e-171	570.2	0.4	1.0	1	0	0	1	1	1	1	ThiC	family
K-box	PF01486.12	gi|408403295|ref|YP_006861278.1|	-	0.11	12.3	3.7	0.35	10.6	0.3	2.1	2	0	0	2	2	2	0	K-box	region
Nup54	PF13874.1	gi|408403295|ref|YP_006861278.1|	-	0.14	11.8	1.5	1	9.0	0.4	2.0	2	0	0	2	2	2	0	Nucleoporin	complex	subunit	54
BLOC1_2	PF10046.4	gi|408403295|ref|YP_006861278.1|	-	0.52	10.4	2.4	2.6	8.2	0.2	2.1	2	0	0	2	2	2	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
Snapin_Pallidin	PF14712.1	gi|408403295|ref|YP_006861278.1|	-	1.2	9.5	4.7	2.2	8.6	0.6	2.1	2	0	0	2	2	2	0	Snapin/Pallidin
Peptidase_A24	PF01478.13	gi|408403296|ref|YP_006861279.1|	-	7.2e-09	35.7	11.1	7.2e-09	35.7	7.7	2.1	2	0	0	2	2	2	1	Type	IV	leader	peptidase	family
Arc_PepC_II	PF06847.6	gi|408403296|ref|YP_006861279.1|	-	3.4e-06	27.3	0.0	1.6e-05	25.2	0.0	2.2	1	1	0	1	1	1	1	Archaeal	Peptidase	A24	C-terminus	Type	II
CbiN	PF02553.10	gi|408403296|ref|YP_006861279.1|	-	0.0029	17.5	0.4	0.0082	16.1	0.2	1.8	1	1	0	1	1	1	1	Cobalt	transport	protein	component	CbiN
RHH_2	PF03693.9	gi|408403297|ref|YP_006861280.1|	-	0.0018	18.3	0.0	0.0022	18.0	0.0	1.1	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0156)
RHH_1	PF01402.16	gi|408403297|ref|YP_006861280.1|	-	0.0094	15.8	0.1	0.017	14.9	0.0	1.5	2	0	0	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
DUF4319	PF14203.1	gi|408403297|ref|YP_006861280.1|	-	0.011	15.1	0.3	0.079	12.5	0.2	1.9	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4319)
RHH_1	PF01402.16	gi|408403298|ref|YP_006861281.1|	-	0.027	14.3	0.0	0.034	14.0	0.0	1.2	1	0	0	1	1	1	0	Ribbon-helix-helix	protein,	copG	family
DUF2969	PF11184.3	gi|408403298|ref|YP_006861281.1|	-	0.057	13.5	0.0	0.065	13.3	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2969)
DUF217	PF02697.9	gi|408403298|ref|YP_006861281.1|	-	0.066	13.4	0.1	0.08	13.1	0.0	1.2	1	1	0	1	1	1	0	Uncharacterized	ACR,	COG1753
Ribosomal_S21	PF01165.15	gi|408403298|ref|YP_006861281.1|	-	0.11	11.9	0.4	0.17	11.3	0.3	1.4	1	0	0	1	1	1	0	Ribosomal	protein	S21
Glyco_hydro_2_C	PF02836.12	gi|408403299|ref|YP_006861282.1|	-	0.017	14.0	0.0	0.023	13.6	0.0	1.2	1	0	0	1	1	1	0	Glycosyl	hydrolases	family	2,	TIM	barrel	domain
Glyco_hydro_71	PF03659.9	gi|408403300|ref|YP_006861283.1|	-	0.058	11.8	0.0	0.11	10.9	0.0	1.3	1	1	0	1	1	1	0	Glycosyl	hydrolase	family	71
Epimerase	PF01370.16	gi|408403302|ref|YP_006861285.1|	-	1.8e-08	34.0	0.0	2.1e-08	33.8	0.0	1.0	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
3Beta_HSD	PF01073.14	gi|408403302|ref|YP_006861285.1|	-	3e-07	29.4	0.0	3.9e-07	29.0	0.0	1.1	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
adh_short	PF00106.20	gi|408403302|ref|YP_006861285.1|	-	5.9e-06	26.3	0.1	4.1e-05	23.5	0.1	2.2	1	1	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.5	gi|408403302|ref|YP_006861285.1|	-	8e-06	25.6	0.2	0.00069	19.3	0.2	2.5	1	1	0	1	1	1	1	KR	domain
NAD_binding_10	PF13460.1	gi|408403302|ref|YP_006861285.1|	-	5.1e-05	23.3	0.0	6.6e-05	22.9	0.0	1.2	1	0	0	1	1	1	1	NADH(P)-binding
RmlD_sub_bind	PF04321.12	gi|408403302|ref|YP_006861285.1|	-	0.00035	19.5	0.0	0.00045	19.1	0.0	1.1	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
NAD_binding_4	PF07993.7	gi|408403302|ref|YP_006861285.1|	-	0.035	13.0	0.0	0.13	11.1	0.0	1.7	1	1	1	2	2	2	0	Male	sterility	protein
DUF4574	PF15141.1	gi|408403303|ref|YP_006861286.1|	-	0.00082	19.0	2.7	0.00082	19.0	1.9	1.9	1	1	1	2	2	2	1	Domain	of	unknown	function	(DUF4574)
DUF2938	PF11158.3	gi|408403303|ref|YP_006861286.1|	-	0.0058	15.9	3.3	0.12	11.7	0.3	2.5	1	1	1	3	3	3	1	Protein	of	unknown	function	(DUF2938)
DUF3068	PF11271.3	gi|408403303|ref|YP_006861286.1|	-	0.0073	15.3	0.0	0.0085	15.1	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3068)
DUF4214	PF13946.1	gi|408403303|ref|YP_006861286.1|	-	0.031	13.9	1.8	4.9	6.9	0.2	2.8	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF4214)
ATP-synt_C	PF00137.16	gi|408403303|ref|YP_006861286.1|	-	0.052	13.4	0.3	0.27	11.1	0.0	2.1	2	1	0	2	2	2	0	ATP	synthase	subunit	C
HemX	PF04375.9	gi|408403303|ref|YP_006861286.1|	-	0.12	10.9	7.4	0.052	12.1	3.7	1.4	1	1	1	2	2	2	0	HemX
Methyltrn_RNA_4	PF09936.4	gi|408403303|ref|YP_006861286.1|	-	0.14	11.6	1.5	0.19	11.2	1.1	1.2	1	0	0	1	1	1	0	SAM-dependent	RNA	methyltransferase
DUF937	PF06078.6	gi|408403303|ref|YP_006861286.1|	-	0.18	11.9	5.6	0.25	11.5	3.9	1.1	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF937)
DUF2232	PF09991.4	gi|408403303|ref|YP_006861286.1|	-	0.56	9.1	13.1	0.87	8.5	8.1	1.9	1	1	0	1	1	1	0	Predicted	membrane	protein	(DUF2232)
Choline_kinase	PF01633.15	gi|408403303|ref|YP_006861286.1|	-	2.4	7.6	11.0	2.1	7.8	6.7	1.5	1	1	1	2	2	2	0	Choline/ethanolamine	kinase
DUF95	PF01944.12	gi|408403303|ref|YP_006861286.1|	-	4.7	6.8	9.6	0.37	10.4	2.7	1.9	1	1	1	2	2	2	0	Integral	membrane	protein	DUF95
NCKAP5	PF15246.1	gi|408403303|ref|YP_006861286.1|	-	8.3	5.6	16.7	16	4.7	11.6	1.4	1	1	0	1	1	1	0	Nck-associated	protein	5,	Peripheral	clock	protein
SGL	PF08450.7	gi|408403304|ref|YP_006861287.1|	-	2e-10	40.4	0.4	2.9e-06	26.8	0.2	3.1	2	1	1	3	3	3	2	SMP-30/Gluconolaconase/LRE-like	region
NHL	PF01436.16	gi|408403304|ref|YP_006861287.1|	-	0.0052	16.6	0.4	0.21	11.5	0.1	3.8	4	0	0	4	4	4	1	NHL	repeat
SBBP	PF06739.6	gi|408403304|ref|YP_006861287.1|	-	0.18	11.6	1.6	13	5.7	0.0	3.9	4	0	0	4	4	4	0	Beta-propeller	repeat
PSII_BNR	PF14870.1	gi|408403305|ref|YP_006861288.1|	-	1.1e-08	34.4	0.4	1.5e-05	24.1	0.1	2.7	2	1	1	3	3	3	2	Photosynthesis	system	II	assembly	factor	YCF48
BNR	PF02012.15	gi|408403305|ref|YP_006861288.1|	-	1.4e-06	27.2	11.5	0.017	14.8	0.2	4.9	4	0	0	4	4	4	3	BNR/Asp-box	repeat
SBBP	PF06739.6	gi|408403305|ref|YP_006861288.1|	-	0.0039	16.9	0.0	0.13	12.0	0.0	3.0	3	0	0	3	3	3	1	Beta-propeller	repeat
BNR_2	PF13088.1	gi|408403305|ref|YP_006861288.1|	-	0.0052	16.1	0.6	0.23	10.6	0.2	2.5	1	1	1	2	2	2	1	BNR	repeat-like	domain
Reg_prop	PF07494.6	gi|408403305|ref|YP_006861288.1|	-	0.0064	16.3	0.0	20	5.6	0.0	3.8	3	0	0	3	3	3	1	Two	component	regulator	propeller
DUF4185	PF13810.1	gi|408403305|ref|YP_006861288.1|	-	0.008	15.1	1.3	0.71	8.7	0.0	3.3	2	2	2	4	4	4	1	Domain	of	unknown	function	(DUF4185)
SKG6	PF08693.5	gi|408403305|ref|YP_006861288.1|	-	0.47	9.7	8.3	0.096	12.0	2.0	2.5	2	0	0	2	2	2	0	Transmembrane	alpha-helix	domain
NAD_binding_2	PF03446.10	gi|408403306|ref|YP_006861289.1|	-	2.1e-18	66.7	0.0	2.6e-18	66.4	0.0	1.1	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
6PGD	PF00393.14	gi|408403306|ref|YP_006861289.1|	-	8.9e-08	31.6	0.0	1.4e-07	31.0	0.0	1.3	1	0	0	1	1	1	1	6-phosphogluconate	dehydrogenase,	C-terminal	domain
6PGD	PF00393.14	gi|408403307|ref|YP_006861290.1|	-	0.018	14.3	0.0	0.018	14.2	0.0	1.1	1	0	0	1	1	1	0	6-phosphogluconate	dehydrogenase,	C-terminal	domain
DUF2717	PF10911.3	gi|408403307|ref|YP_006861290.1|	-	0.12	11.8	0.0	1.1	8.7	0.0	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2717)
DUF608	PF04685.8	gi|408403308|ref|YP_006861291.1|	-	4.3e-08	32.2	0.1	7.3e-08	31.5	0.1	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF608
GDE_C	PF06202.9	gi|408403308|ref|YP_006861291.1|	-	1.1e-05	24.3	1.4	0.0026	16.5	0.2	2.5	2	1	1	3	3	3	2	Amylo-alpha-1,6-glucosidase
Trehalase	PF01204.13	gi|408403308|ref|YP_006861291.1|	-	0.013	14.1	0.1	0.02	13.5	0.0	1.2	1	0	0	1	1	1	0	Trehalase
Zn-ribbon_8	PF09723.5	gi|408403309|ref|YP_006861292.1|	-	0.00066	19.5	0.1	0.00091	19.1	0.1	1.3	1	0	0	1	1	1	1	Zinc	ribbon	domain
zf-C2H2	PF00096.21	gi|408403309|ref|YP_006861292.1|	-	0.00078	19.6	0.2	0.0016	18.6	0.1	1.6	1	1	0	1	1	1	1	Zinc	finger,	C2H2	type
zf-C2H2_2	PF12756.2	gi|408403309|ref|YP_006861292.1|	-	0.0022	18.0	0.1	0.0023	17.9	0.1	1.1	1	0	0	1	1	1	1	C2H2	type	zinc-finger	(2	copies)
zf-C2H2_4	PF13894.1	gi|408403309|ref|YP_006861292.1|	-	0.0034	17.6	0.3	0.0052	17.0	0.2	1.3	1	0	0	1	1	1	1	C2H2-type	zinc	finger
zf-BED	PF02892.10	gi|408403309|ref|YP_006861292.1|	-	0.041	13.6	0.1	0.054	13.2	0.1	1.2	1	0	0	1	1	1	0	BED	zinc	finger
C1_4	PF07975.7	gi|408403309|ref|YP_006861292.1|	-	0.062	13.3	0.0	0.071	13.1	0.0	1.1	1	0	0	1	1	1	0	TFIIH	C1-like	domain
zf-H2C2_2	PF13465.1	gi|408403309|ref|YP_006861292.1|	-	0.14	12.4	0.8	2.6	8.4	0.0	2.1	2	0	0	2	2	2	0	Zinc-finger	double	domain
zf-C2H2_6	PF13912.1	gi|408403309|ref|YP_006861292.1|	-	0.19	11.6	1.4	0.29	11.1	1.0	1.4	1	1	0	1	1	1	0	C2H2-type	zinc	finger
Lactamase_B_5	PF14597.1	gi|408403310|ref|YP_006861293.1|	-	0.0034	16.8	0.0	0.0067	15.8	0.0	1.4	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Rubrerythrin	PF02915.12	gi|408403312|ref|YP_006861295.1|	-	0.01	16.1	0.0	0.012	15.9	0.0	1.2	1	0	0	1	1	1	0	Rubrerythrin
Ferritin_2	PF13668.1	gi|408403312|ref|YP_006861295.1|	-	0.026	14.4	0.4	0.053	13.4	0.2	1.4	1	1	0	1	1	1	0	Ferritin-like	domain
XH	PF03469.9	gi|408403312|ref|YP_006861295.1|	-	0.064	12.9	0.2	0.078	12.6	0.1	1.1	1	0	0	1	1	1	0	XH	domain
DUF608	PF04685.8	gi|408403313|ref|YP_006861296.1|	-	7.4e-08	31.4	0.1	8.5e-08	31.2	0.1	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF608
Death	PF00531.17	gi|408403313|ref|YP_006861296.1|	-	0.046	13.4	0.1	0.21	11.3	0.1	2.0	2	0	0	2	2	2	0	Death	domain
adh_short_C2	PF13561.1	gi|408403315|ref|YP_006861298.1|	-	2.1e-32	112.8	0.5	2.4e-32	112.6	0.3	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.20	gi|408403315|ref|YP_006861298.1|	-	8.2e-32	110.4	0.0	1.1e-31	110.0	0.0	1.2	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.5	gi|408403315|ref|YP_006861298.1|	-	9.2e-11	41.7	0.0	1.4e-10	41.1	0.0	1.3	1	0	0	1	1	1	1	KR	domain
DUF1776	PF08643.5	gi|408403315|ref|YP_006861298.1|	-	0.00043	19.5	0.0	0.00063	18.9	0.0	1.2	1	0	0	1	1	1	1	Fungal	family	of	unknown	function	(DUF1776)
Eno-Rase_NADH_b	PF12242.3	gi|408403315|ref|YP_006861298.1|	-	0.031	14.0	1.0	0.083	12.6	0.1	2.2	3	0	0	3	3	3	0	NAD(P)H	binding	domain	of	trans-2-enoyl-CoA	reductase
F420_oxidored	PF03807.12	gi|408403315|ref|YP_006861298.1|	-	0.032	14.6	1.1	0.054	13.9	0.2	1.8	2	0	0	2	2	2	0	NADP	oxidoreductase	coenzyme	F420-dependent
Epimerase	PF01370.16	gi|408403315|ref|YP_006861298.1|	-	0.054	12.9	1.0	0.15	11.4	0.4	1.9	1	1	1	2	2	2	0	NAD	dependent	epimerase/dehydratase	family
Saccharop_dh	PF03435.13	gi|408403315|ref|YP_006861298.1|	-	0.068	12.1	0.1	0.11	11.5	0.1	1.2	1	0	0	1	1	1	0	Saccharopine	dehydrogenase
NAD_binding_1	PF00175.16	gi|408403316|ref|YP_006861299.1|	-	2.3e-27	95.7	0.1	6.3e-27	94.2	0.0	1.8	2	0	0	2	2	2	1	Oxidoreductase	NAD-binding	domain
Rieske	PF00355.21	gi|408403316|ref|YP_006861299.1|	-	6.9e-14	51.1	0.0	1.6e-13	50.0	0.0	1.6	1	0	0	1	1	1	1	Rieske	[2Fe-2S]	domain
Rieske_2	PF13806.1	gi|408403316|ref|YP_006861299.1|	-	6.4e-06	25.8	0.0	1.2e-05	24.9	0.0	1.5	1	0	0	1	1	1	1	Rieske-like	[2Fe-2S]	domain
FAD_binding_6	PF00970.19	gi|408403316|ref|YP_006861299.1|	-	0.00027	21.0	0.0	0.00049	20.1	0.0	1.5	1	0	0	1	1	1	1	Oxidoreductase	FAD-binding	domain
NAD_binding_6	PF08030.7	gi|408403316|ref|YP_006861299.1|	-	0.00051	19.9	0.0	0.16	11.8	0.0	2.5	1	1	1	2	2	2	2	Ferric	reductase	NAD	binding	domain
SIP	PF04954.8	gi|408403316|ref|YP_006861299.1|	-	0.078	13.3	0.0	0.16	12.3	0.0	1.5	1	0	0	1	1	1	0	Siderophore-interacting	protein
Lactonase	PF10282.4	gi|408403317|ref|YP_006861300.1|	-	3.4e-06	26.3	0.3	1.6e-05	24.2	0.2	2.0	1	1	1	2	2	2	1	Lactonase,	7-bladed	beta-propeller
SBP56	PF05694.6	gi|408403317|ref|YP_006861300.1|	-	0.0052	15.3	0.1	0.33	9.4	0.0	2.2	2	0	0	2	2	2	2	56kDa	selenium	binding	protein	(SBP56)
Cupredoxin_1	PF13473.1	gi|408403317|ref|YP_006861300.1|	-	0.022	14.6	0.0	0.06	13.2	0.0	1.8	1	0	0	1	1	1	0	Cupredoxin-like	domain
Copper-bind	PF00127.15	gi|408403317|ref|YP_006861300.1|	-	0.083	13.1	0.2	0.5	10.6	0.0	2.3	2	0	0	2	2	2	0	Copper	binding	proteins,	plastocyanin/azurin	family
CbtB	PF09489.5	gi|408403318|ref|YP_006861301.1|	-	5.5e-07	29.3	3.2	2.1e-05	24.3	0.8	2.4	2	0	0	2	2	2	2	Probable	cobalt	transporter	subunit	(CbtB)
SecE	PF00584.15	gi|408403318|ref|YP_006861301.1|	-	0.023	14.2	0.2	0.037	13.5	0.1	1.3	1	0	0	1	1	1	0	SecE/Sec61-gamma	subunits	of	protein	translocation	complex
CbtA	PF09490.5	gi|408403319|ref|YP_006861302.1|	-	0.0011	18.3	0.4	0.0013	18.1	0.3	1.0	1	0	0	1	1	1	1	Probable	cobalt	transporter	subunit	(CbtA)
WSS_VP	PF12175.3	gi|408403319|ref|YP_006861302.1|	-	0.25	10.3	2.3	0.3	10.1	1.6	1.0	1	0	0	1	1	1	0	White	spot	syndrome	virus	structural	envelope	protein	VP
GSDH	PF07995.6	gi|408403322|ref|YP_006861305.1|	-	1.6e-07	30.7	0.0	1e-05	24.8	0.0	2.4	2	0	0	2	2	2	2	Glucose	/	Sorbosone	dehydrogenase
NHL	PF01436.16	gi|408403322|ref|YP_006861305.1|	-	0.017	15.0	1.3	11	6.1	0.0	4.6	5	0	0	5	5	5	0	NHL	repeat
AP_endonuc_2	PF01261.19	gi|408403323|ref|YP_006861306.1|	-	5e-13	48.8	0.0	6.9e-13	48.3	0.0	1.2	1	1	0	1	1	1	1	Xylose	isomerase-like	TIM	barrel
AP_endonuc_2_N	PF07582.7	gi|408403323|ref|YP_006861306.1|	-	0.048	13.2	0.1	0.13	11.8	0.0	1.8	1	1	0	1	1	1	0	AP	endonuclease	family	2	C	terminus
Phosphodiest	PF01663.17	gi|408403324|ref|YP_006861307.1|	-	2.5e-51	175.1	0.0	2.9e-51	174.9	0.0	1.0	1	0	0	1	1	1	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
Sulfatase	PF00884.18	gi|408403324|ref|YP_006861307.1|	-	0.00092	18.4	0.0	0.011	14.9	0.0	2.0	1	1	0	1	1	1	1	Sulfatase
UbiA	PF01040.13	gi|408403325|ref|YP_006861308.1|	-	2e-16	59.9	33.3	3.8e-15	55.8	23.1	2.2	1	1	0	1	1	1	1	UbiA	prenyltransferase	family
DUF898	PF05987.8	gi|408403325|ref|YP_006861308.1|	-	3.4	6.4	19.9	5.9	5.6	13.8	1.4	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF898)
AP_endonuc_2	PF01261.19	gi|408403326|ref|YP_006861309.1|	-	9.6e-36	123.0	0.0	4.5e-35	120.8	0.0	1.8	2	0	0	2	2	2	1	Xylose	isomerase-like	TIM	barrel
UxuA	PF03786.8	gi|408403326|ref|YP_006861309.1|	-	0.0013	17.3	0.1	0.008	14.7	0.0	1.9	2	0	0	2	2	2	1	D-mannonate	dehydratase	(UxuA)
AP_endonuc_2_N	PF07582.7	gi|408403326|ref|YP_006861309.1|	-	0.016	14.7	0.0	0.1	12.1	0.0	2.1	2	0	0	2	2	2	0	AP	endonuclease	family	2	C	terminus
DUF1864	PF08933.6	gi|408403326|ref|YP_006861309.1|	-	0.069	11.6	0.0	0.1	11.1	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1864)
TatD_DNase	PF01026.16	gi|408403327|ref|YP_006861310.1|	-	3.3e-22	78.9	0.0	4.1e-22	78.6	0.0	1.0	1	0	0	1	1	1	1	TatD	related	DNase
ADH_N	PF08240.7	gi|408403328|ref|YP_006861311.1|	-	7.1e-24	83.6	2.9	1.3e-23	82.8	2.0	1.4	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.21	gi|408403328|ref|YP_006861311.1|	-	1.5e-12	47.2	0.1	2.2e-12	46.6	0.0	1.3	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_zinc_N_2	PF13602.1	gi|408403328|ref|YP_006861311.1|	-	0.017	15.9	0.0	0.029	15.2	0.0	1.4	1	0	0	1	1	1	0	Zinc-binding	dehydrogenase
RNase_PH_C	PF03725.10	gi|408403329|ref|YP_006861312.1|	-	0.05	13.5	0.1	0.071	13.0	0.1	1.3	1	0	0	1	1	1	0	3'	exoribonuclease	family,	domain	2
PNPase	PF03726.9	gi|408403329|ref|YP_006861312.1|	-	0.062	13.5	0.2	0.1	12.9	0.1	1.4	1	1	0	1	1	1	0	Polyribonucleotide	nucleotidyltransferase,	RNA	binding	domain
DUF2535	PF10751.4	gi|408403330|ref|YP_006861313.1|	-	0.14	12.3	0.4	0.22	11.6	0.1	1.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2535)
Creatininase	PF02633.9	gi|408403331|ref|YP_006861314.1|	-	5e-15	55.2	0.0	5.4e-15	55.1	0.0	1.0	1	0	0	1	1	1	1	Creatinine	amidohydrolase
DUF4242	PF14026.1	gi|408403332|ref|YP_006861315.1|	-	0.096	12.7	0.0	0.13	12.4	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4242)
YCII	PF03795.9	gi|408403332|ref|YP_006861315.1|	-	0.13	12.5	0.0	0.18	12.0	0.0	1.3	1	0	0	1	1	1	0	YCII-related	domain
eIF-4B	PF06273.6	gi|408403332|ref|YP_006861315.1|	-	0.14	10.8	0.0	0.14	10.8	0.0	1.1	1	0	0	1	1	1	0	Plant	specific	eukaryotic	initiation	factor	4B
Cupredoxin_1	PF13473.1	gi|408403334|ref|YP_006861317.1|	-	7.4e-10	38.6	0.0	1.1e-09	38.1	0.0	1.3	1	0	0	1	1	1	1	Cupredoxin-like	domain
Copper-bind	PF00127.15	gi|408403334|ref|YP_006861317.1|	-	9.7e-05	22.5	0.3	0.021	15.0	0.0	2.5	2	1	1	3	3	3	2	Copper	binding	proteins,	plastocyanin/azurin	family
Lactamase_B_2	PF12706.2	gi|408403335|ref|YP_006861318.1|	-	6.6e-09	35.5	0.0	1.2e-07	31.4	0.0	2.1	2	0	0	2	2	2	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.22	gi|408403335|ref|YP_006861318.1|	-	0.038	13.6	0.0	0.35	10.4	0.0	2.4	2	2	0	2	2	2	0	Metallo-beta-lactamase	superfamily
SBP_bac_1	PF01547.20	gi|408403335|ref|YP_006861318.1|	-	0.063	12.9	0.0	0.092	12.4	0.0	1.3	1	0	0	1	1	1	0	Bacterial	extracellular	solute-binding	protein
DinB_2	PF12867.2	gi|408403336|ref|YP_006861319.1|	-	9.7e-08	32.4	0.0	1e-07	32.3	0.0	1.0	1	0	0	1	1	1	1	DinB	superfamily
DinB	PF05163.7	gi|408403336|ref|YP_006861319.1|	-	0.00026	20.7	0.0	0.00027	20.6	0.0	1.0	1	0	0	1	1	1	1	DinB	family
DDE_Tnp_1	PF01609.16	gi|408403339|ref|YP_006861322.1|	-	0.0042	16.6	0.2	0.0078	15.7	0.1	1.5	1	1	0	1	1	1	1	Transposase	DDE	domain
DUF1815	PF08844.5	gi|408403339|ref|YP_006861322.1|	-	0.018	14.6	0.2	0.049	13.2	0.0	1.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1815)
FTR1	PF03239.9	gi|408403340|ref|YP_006861323.1|	-	9.9e-19	67.4	24.0	1.8e-12	46.8	5.8	2.3	1	1	1	2	2	2	2	Iron	permease	FTR1	family
Radical_SAM	PF04055.16	gi|408403341|ref|YP_006861324.1|	-	1.1e-12	48.4	0.6	3.8e-12	46.6	0.4	1.8	2	0	0	2	2	2	1	Radical	SAM	superfamily
Fer4_14	PF13394.1	gi|408403341|ref|YP_006861324.1|	-	2.1e-07	30.9	0.2	4.7e-07	29.8	0.1	1.6	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_12	PF13353.1	gi|408403341|ref|YP_006861324.1|	-	4.8e-06	26.7	0.3	9.6e-06	25.7	0.2	1.4	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
DUF2296	PF10058.4	gi|408403342|ref|YP_006861325.1|	-	0.0015	18.2	0.2	0.0031	17.2	0.2	1.5	1	1	0	1	1	1	1	Predicted	integral	membrane	metal-binding	protein	(DUF2296)
zf-H2C2_2	PF13465.1	gi|408403342|ref|YP_006861325.1|	-	0.0045	17.2	1.2	3.3	8.1	0.1	2.3	2	0	0	2	2	2	2	Zinc-finger	double	domain
zinc_ribbon_5	PF13719.1	gi|408403342|ref|YP_006861325.1|	-	0.0068	15.9	0.5	0.87	9.2	0.1	2.3	2	0	0	2	2	2	1	zinc-ribbon	domain
zinc_ribbon_4	PF13717.1	gi|408403342|ref|YP_006861325.1|	-	0.0085	15.7	0.4	1.4	8.6	0.1	2.3	2	0	0	2	2	2	1	zinc-ribbon	domain
tRNA-synt_1f	PF01921.13	gi|408403342|ref|YP_006861325.1|	-	0.012	14.2	0.0	0.015	13.9	0.0	1.1	1	0	0	1	1	1	0	tRNA	synthetases	class	I	(K)
OrfB_Zn_ribbon	PF07282.6	gi|408403342|ref|YP_006861325.1|	-	0.013	15.1	0.1	0.021	14.4	0.1	1.4	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
zf-C2H2	PF00096.21	gi|408403342|ref|YP_006861325.1|	-	0.023	14.9	1.3	4.8	7.7	0.2	2.5	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
zf-ribbon_3	PF13248.1	gi|408403342|ref|YP_006861325.1|	-	0.048	12.8	1.8	0.43	9.8	0.2	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-CHY	PF05495.7	gi|408403342|ref|YP_006861325.1|	-	0.053	13.6	0.1	0.087	12.9	0.1	1.3	1	0	0	1	1	1	0	CHY	zinc	finger
C1_1	PF00130.17	gi|408403342|ref|YP_006861325.1|	-	0.057	13.1	0.2	0.087	12.5	0.1	1.3	1	0	0	1	1	1	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
Elf1	PF05129.8	gi|408403342|ref|YP_006861325.1|	-	0.06	13.0	1.0	0.11	12.1	0.7	1.5	1	1	0	1	1	1	0	Transcription	elongation	factor	Elf1	like
zf-C2H2_4	PF13894.1	gi|408403342|ref|YP_006861325.1|	-	0.06	13.7	0.5	2.3	8.7	0.0	2.5	2	0	0	2	2	2	0	C2H2-type	zinc	finger
Nudix_N_2	PF14803.1	gi|408403342|ref|YP_006861325.1|	-	0.069	12.8	1.8	1.9	8.2	0.1	2.2	2	0	0	2	2	2	0	Nudix	N-terminal
HypA	PF01155.14	gi|408403342|ref|YP_006861325.1|	-	0.084	12.5	0.4	0.17	11.5	0.2	1.7	1	1	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
CpXC	PF14353.1	gi|408403342|ref|YP_006861325.1|	-	0.098	12.6	1.7	1.2	9.1	0.1	2.3	1	1	1	2	2	2	0	CpXC	protein
Zn-ribbon_8	PF09723.5	gi|408403342|ref|YP_006861325.1|	-	0.13	12.2	2.6	1.2	9.2	1.5	2.4	1	1	1	2	2	2	0	Zinc	ribbon	domain
zf-C2H2_6	PF13912.1	gi|408403342|ref|YP_006861325.1|	-	0.13	12.1	1.6	4.4	7.3	0.1	2.4	2	0	0	2	2	2	0	C2H2-type	zinc	finger
TFIIS_C	PF01096.13	gi|408403342|ref|YP_006861325.1|	-	0.14	11.8	1.8	4.3	7.0	0.1	2.4	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
zinc_ribbon_2	PF13240.1	gi|408403342|ref|YP_006861325.1|	-	0.14	11.6	0.9	2.1	7.9	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.7	gi|408403342|ref|YP_006861325.1|	-	0.14	11.4	6.5	4	6.8	0.0	2.9	2	1	0	2	2	2	0	TFIIB	zinc-binding
Rubredoxin	PF00301.15	gi|408403342|ref|YP_006861325.1|	-	0.2	11.5	2.6	0.74	9.7	0.1	2.6	3	0	0	3	3	3	0	Rubredoxin
DZR	PF12773.2	gi|408403342|ref|YP_006861325.1|	-	0.21	11.4	1.1	1.5	8.6	0.7	2.0	1	1	1	2	2	2	0	Double	zinc	ribbon
DUF1610	PF07754.6	gi|408403342|ref|YP_006861325.1|	-	0.42	10.7	0.1	0.42	10.7	0.1	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1610)
Prim_Zn_Ribbon	PF08273.7	gi|408403342|ref|YP_006861325.1|	-	0.46	10.6	2.3	14	5.8	0.4	2.3	2	0	0	2	2	2	0	Zinc-binding	domain	of	primase-helicase
zf-Mss51	PF13824.1	gi|408403342|ref|YP_006861325.1|	-	1.3	8.9	4.5	5.4	6.9	3.1	2.2	1	1	0	1	1	1	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
DNA_pol3_delta2	PF13177.1	gi|408403343|ref|YP_006861326.1|	-	2.8e-19	69.3	0.2	4.5e-18	65.4	0.2	2.4	1	1	0	1	1	1	1	DNA	polymerase	III,	delta	subunit
AAA	PF00004.24	gi|408403343|ref|YP_006861326.1|	-	3.2e-16	59.7	0.8	5.3e-16	59.0	0.1	1.7	2	0	0	2	2	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Rep_fac_C	PF08542.6	gi|408403343|ref|YP_006861326.1|	-	6.8e-10	38.8	0.0	2.4e-09	37.0	0.0	2.0	1	0	0	1	1	1	1	Replication	factor	C	C-terminal	domain
Rad17	PF03215.10	gi|408403343|ref|YP_006861326.1|	-	1.5e-09	37.1	1.2	3.1e-06	26.1	0.1	2.4	1	1	1	2	2	2	2	Rad17	cell	cycle	checkpoint	protein
AAA_14	PF13173.1	gi|408403343|ref|YP_006861326.1|	-	1.9e-07	31.0	0.0	4.2e-07	29.9	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
AAA_22	PF13401.1	gi|408403343|ref|YP_006861326.1|	-	4.4e-07	30.1	0.4	0.012	15.7	0.0	2.5	1	1	1	2	2	2	2	AAA	domain
RuvB_N	PF05496.7	gi|408403343|ref|YP_006861326.1|	-	4.6e-07	29.1	0.0	1.4e-06	27.5	0.0	1.8	1	0	0	1	1	1	1	Holliday	junction	DNA	helicase	ruvB	N-terminus
DNA_pol3_delta	PF06144.8	gi|408403343|ref|YP_006861326.1|	-	6e-07	29.1	0.2	1.4e-06	27.9	0.0	1.7	2	0	0	2	2	2	1	DNA	polymerase	III,	delta	subunit
AAA_10	PF12846.2	gi|408403343|ref|YP_006861326.1|	-	1e-05	25.1	0.8	0.097	12.0	0.0	2.9	2	1	0	3	3	3	2	AAA-like	domain
AAA_16	PF13191.1	gi|408403343|ref|YP_006861326.1|	-	1.5e-05	25.0	0.0	0.0094	15.9	0.0	2.3	1	1	1	2	2	2	1	AAA	ATPase	domain
AAA_5	PF07728.9	gi|408403343|ref|YP_006861326.1|	-	2.9e-05	23.8	0.1	0.00012	21.7	0.0	2.0	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
PhoH	PF02562.11	gi|408403343|ref|YP_006861326.1|	-	3.8e-05	22.9	0.1	0.052	12.7	0.0	2.4	2	0	0	2	2	2	2	PhoH-like	protein
TIP49	PF06068.8	gi|408403343|ref|YP_006861326.1|	-	7.4e-05	21.6	0.5	0.092	11.4	0.0	2.5	1	1	1	2	2	2	2	TIP49	C-terminus
AAA_19	PF13245.1	gi|408403343|ref|YP_006861326.1|	-	9.9e-05	22.0	0.0	0.0016	18.1	0.0	2.3	2	0	0	2	2	2	1	Part	of	AAA	domain
DEAD	PF00270.24	gi|408403343|ref|YP_006861326.1|	-	0.00048	19.6	0.2	0.26	10.7	0.0	2.3	1	1	1	2	2	2	2	DEAD/DEAH	box	helicase
Mg_chelatase	PF01078.16	gi|408403343|ref|YP_006861326.1|	-	0.0011	18.1	0.2	0.12	11.5	0.0	2.6	1	1	1	2	2	2	1	Magnesium	chelatase,	subunit	ChlI
AAA_25	PF13481.1	gi|408403343|ref|YP_006861326.1|	-	0.0033	16.8	0.2	0.011	15.1	0.2	1.8	1	1	0	1	1	1	1	AAA	domain
Arch_ATPase	PF01637.13	gi|408403343|ref|YP_006861326.1|	-	0.0035	17.0	0.3	0.13	11.9	0.3	2.2	1	1	1	2	2	2	2	Archaeal	ATPase
AAA_2	PF07724.9	gi|408403343|ref|YP_006861326.1|	-	0.0037	17.2	0.2	0.038	13.9	0.0	2.2	2	1	0	2	2	2	1	AAA	domain	(Cdc48	subfamily)
ResIII	PF04851.10	gi|408403343|ref|YP_006861326.1|	-	0.007	16.2	0.0	0.028	14.2	0.0	1.9	1	1	1	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
Sigma54_activat	PF00158.21	gi|408403343|ref|YP_006861326.1|	-	0.0075	15.7	0.0	0.15	11.4	0.0	2.3	1	1	0	1	1	1	1	Sigma-54	interaction	domain
AAA_30	PF13604.1	gi|408403343|ref|YP_006861326.1|	-	0.0087	15.6	1.7	0.012	15.1	0.1	2.0	2	1	0	2	2	2	1	AAA	domain
ArgK	PF03308.11	gi|408403343|ref|YP_006861326.1|	-	0.017	13.9	0.3	0.1	11.3	0.1	2.1	1	1	0	2	2	2	0	ArgK	protein
NACHT	PF05729.7	gi|408403343|ref|YP_006861326.1|	-	0.022	14.4	0.1	0.66	9.6	0.1	2.4	1	1	0	1	1	1	0	NACHT	domain
MipZ	PF09140.6	gi|408403343|ref|YP_006861326.1|	-	0.031	13.3	0.0	0.063	12.3	0.0	1.4	1	0	0	1	1	1	0	ATPase	MipZ
IstB_IS21	PF01695.12	gi|408403343|ref|YP_006861326.1|	-	0.041	13.2	0.3	0.16	11.3	0.2	1.8	1	1	0	1	1	1	0	IstB-like	ATP	binding	protein
T2SE	PF00437.15	gi|408403343|ref|YP_006861326.1|	-	0.055	12.3	0.0	0.11	11.3	0.0	1.5	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
DUF258	PF03193.11	gi|408403343|ref|YP_006861326.1|	-	0.065	12.4	0.0	0.47	9.6	0.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function,	DUF258
AAA_18	PF13238.1	gi|408403343|ref|YP_006861326.1|	-	0.074	13.3	0.7	0.26	11.6	0.1	2.0	2	1	0	2	2	2	0	AAA	domain
RNA_helicase	PF00910.17	gi|408403343|ref|YP_006861326.1|	-	0.088	12.9	0.0	0.36	11.0	0.0	2.0	2	0	0	2	2	1	0	RNA	helicase
ArsA_ATPase	PF02374.10	gi|408403343|ref|YP_006861326.1|	-	0.099	11.6	1.4	0.42	9.6	0.1	2.6	1	1	1	2	2	2	0	Anion-transporting	ATPase
AAA_17	PF13207.1	gi|408403343|ref|YP_006861326.1|	-	0.1	13.3	0.5	0.41	11.4	0.4	2.0	1	1	0	1	1	1	0	AAA	domain
DUF3088	PF11287.3	gi|408403343|ref|YP_006861326.1|	-	0.12	11.8	0.0	0.26	10.7	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3088)
NTPase_1	PF03266.10	gi|408403343|ref|YP_006861326.1|	-	0.2	11.3	1.1	3.5	7.2	0.1	2.3	1	1	1	2	2	2	0	NTPase
FtsK_SpoIIIE	PF01580.13	gi|408403343|ref|YP_006861326.1|	-	0.26	10.7	1.5	1.4	8.3	0.0	2.5	2	1	1	3	3	3	0	FtsK/SpoIIIE	family
OrfB_IS605	PF01385.14	gi|408403345|ref|YP_006861328.1|	-	1.9e-23	83.0	2.3	5.3e-23	81.5	1.6	1.7	1	1	0	1	1	1	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.6	gi|408403345|ref|YP_006861328.1|	-	5.5e-22	77.1	0.5	1.1e-21	76.1	0.4	1.6	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
HTH_OrfB_IS605	PF12323.3	gi|408403345|ref|YP_006861328.1|	-	3.7e-13	48.5	1.4	8.2e-13	47.4	0.2	2.2	2	0	0	2	2	2	1	Helix-turn-helix	domain
HypA	PF01155.14	gi|408403345|ref|YP_006861328.1|	-	0.043	13.5	0.1	0.098	12.3	0.0	1.5	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
DZR	PF12773.2	gi|408403345|ref|YP_006861328.1|	-	0.09	12.6	0.3	0.23	11.3	0.2	1.6	1	0	0	1	1	1	0	Double	zinc	ribbon
Rpr2	PF04032.11	gi|408403345|ref|YP_006861328.1|	-	0.5	10.2	5.2	2.2	8.2	0.1	3.1	2	1	1	3	3	3	0	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
Sld5	PF05916.6	gi|408403346|ref|YP_006861329.1|	-	1.5e-06	28.4	0.0	2.2e-06	27.9	0.0	1.2	1	0	0	1	1	1	1	GINS	complex	protein
MCM	PF00493.18	gi|408403347|ref|YP_006861330.1|	-	3.7e-125	417.1	0.1	5e-125	416.6	0.1	1.2	1	0	0	1	1	1	1	MCM2/3/5	family
MCM_N	PF14551.1	gi|408403347|ref|YP_006861330.1|	-	1.5e-20	73.9	0.2	4.4e-20	72.3	0.1	1.9	1	0	0	1	1	1	1	MCM	N-terminal	domain
Mg_chelatase	PF01078.16	gi|408403347|ref|YP_006861330.1|	-	4e-07	29.4	0.1	6.3e-05	22.2	0.0	2.5	2	1	0	2	2	2	1	Magnesium	chelatase,	subunit	ChlI
AAA_5	PF07728.9	gi|408403347|ref|YP_006861330.1|	-	6.4e-07	29.1	0.0	3.3e-06	26.8	0.0	2.2	2	1	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
AAA_3	PF07726.6	gi|408403347|ref|YP_006861330.1|	-	0.00031	20.3	0.0	0.0012	18.4	0.0	2.0	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
HypA	PF01155.14	gi|408403347|ref|YP_006861330.1|	-	0.012	15.3	0.3	0.03	14.0	0.2	1.6	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
Zn-ribbon_8	PF09723.5	gi|408403347|ref|YP_006861330.1|	-	0.029	14.3	1.1	0.057	13.3	0.8	1.5	1	0	0	1	1	1	0	Zinc	ribbon	domain
AAA_2	PF07724.9	gi|408403347|ref|YP_006861330.1|	-	0.062	13.2	0.1	0.2	11.5	0.0	1.9	1	1	0	1	1	1	0	AAA	domain	(Cdc48	subfamily)
Ly49	PF08391.5	gi|408403347|ref|YP_006861330.1|	-	0.12	12.4	0.0	0.36	10.9	0.0	1.8	1	1	0	1	1	1	0	Ly49-like	protein,	N-terminal	region
DEAD	PF00270.24	gi|408403348|ref|YP_006861331.1|	-	7.9e-26	90.5	0.0	1.6e-25	89.5	0.0	1.5	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
HHH_5	PF14520.1	gi|408403348|ref|YP_006861331.1|	-	6.7e-10	39.0	1.3	3.5e-09	36.6	0.9	2.3	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
Helicase_C	PF00271.26	gi|408403348|ref|YP_006861331.1|	-	1e-09	38.0	0.0	2.3e-09	36.9	0.0	1.6	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.10	gi|408403348|ref|YP_006861331.1|	-	8.7e-07	28.9	0.0	4.3e-06	26.6	0.0	1.9	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
HHH_2	PF12826.2	gi|408403348|ref|YP_006861331.1|	-	0.0083	15.9	0.0	0.024	14.5	0.0	1.8	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
KaiC	PF06745.8	gi|408403348|ref|YP_006861331.1|	-	0.0093	15.1	0.0	0.02	14.0	0.0	1.5	1	0	0	1	1	1	1	KaiC
HHH	PF00633.18	gi|408403348|ref|YP_006861331.1|	-	0.014	15.0	2.3	0.42	10.4	0.0	2.9	2	0	0	2	2	2	0	Helix-hairpin-helix	motif
AAA_26	PF13500.1	gi|408403348|ref|YP_006861331.1|	-	0.024	14.2	0.0	0.041	13.4	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
T2SE	PF00437.15	gi|408403348|ref|YP_006861331.1|	-	0.1	11.4	0.1	0.17	10.7	0.1	1.3	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
Sec63	PF02889.11	gi|408403348|ref|YP_006861331.1|	-	0.13	11.4	0.0	1.3	8.1	0.0	2.1	1	1	0	1	1	1	0	Sec63	Brl	domain
AAA_19	PF13245.1	gi|408403348|ref|YP_006861331.1|	-	0.79	9.5	3.9	0.62	9.8	0.0	2.7	3	1	0	3	3	3	0	Part	of	AAA	domain
Glycos_transf_4	PF00953.16	gi|408403349|ref|YP_006861332.1|	-	8e-25	87.4	13.2	8e-25	87.4	9.2	2.3	3	0	0	3	3	3	1	Glycosyl	transferase	family	4
DUF2628	PF10947.3	gi|408403350|ref|YP_006861333.1|	-	0.006	16.3	4.4	0.0073	16.0	3.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2628)
DUF1385	PF07136.6	gi|408403350|ref|YP_006861333.1|	-	0.0062	15.6	3.3	0.0071	15.4	2.3	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1385)
DUF2182	PF09948.4	gi|408403350|ref|YP_006861333.1|	-	0.067	13.0	2.5	0.094	12.6	1.7	1.2	1	0	0	1	1	1	0	Predicted	metal-binding	integral	membrane	protein	(DUF2182)
O-antigen_lig	PF13425.1	gi|408403350|ref|YP_006861333.1|	-	0.075	13.0	7.2	0.089	12.7	5.0	1.1	1	0	0	1	1	1	0	O-antigen	ligase	like	membrane	protein
DUF2976	PF11190.3	gi|408403350|ref|YP_006861333.1|	-	0.19	11.2	5.0	0.26	10.8	3.5	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2976)
DUF1469	PF07332.6	gi|408403350|ref|YP_006861333.1|	-	0.54	9.9	10.2	0.62	9.8	7.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1469)
DUF1077	PF06417.7	gi|408403350|ref|YP_006861333.1|	-	0.61	9.4	3.0	0.87	8.9	2.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1077)
NfeD	PF01957.13	gi|408403350|ref|YP_006861333.1|	-	0.71	10.0	8.6	1	9.5	5.9	1.3	1	1	0	1	1	1	0	NfeD-like	C-terminal,	partner-binding
MttA_Hcf106	PF02416.11	gi|408403350|ref|YP_006861333.1|	-	0.93	8.6	5.4	0.31	10.1	0.2	2.2	2	0	0	2	2	2	0	mttA/Hcf106	family
DUF805	PF05656.9	gi|408403350|ref|YP_006861333.1|	-	3.1	7.6	5.4	3.9	7.3	3.7	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF805)
DUF1304	PF06993.7	gi|408403350|ref|YP_006861333.1|	-	4.4	7.0	8.3	6.8	6.4	5.8	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1304)
E1-E2_ATPase	PF00122.15	gi|408403350|ref|YP_006861333.1|	-	9.2	5.2	7.2	11	4.9	5.0	1.1	1	0	0	1	1	1	0	E1-E2	ATPase
LTD	PF00932.14	gi|408403351|ref|YP_006861334.1|	-	3.6e-07	30.2	0.8	3.6e-07	30.2	0.6	2.3	1	1	2	3	3	3	1	Lamin	Tail	Domain
SNase	PF00565.12	gi|408403351|ref|YP_006861334.1|	-	0.012	15.8	0.0	0.022	15.0	0.0	1.4	1	0	0	1	1	1	0	Staphylococcal	nuclease	homologue
DUF4358	PF14270.1	gi|408403352|ref|YP_006861335.1|	-	0.11	12.3	0.8	1.3	8.9	0.1	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4358)
HTH_45	PF14947.1	gi|408403353|ref|YP_006861336.1|	-	7.8e-17	60.8	0.1	9.4e-17	60.6	0.1	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF4364	PF14277.1	gi|408403353|ref|YP_006861336.1|	-	0.027	14.0	0.0	0.029	14.0	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
P-II	PF00543.17	gi|408403355|ref|YP_006861338.1|	-	5e-23	81.5	3.1	5.8e-23	81.3	2.1	1.0	1	0	0	1	1	1	1	Nitrogen	regulatory	protein	P-II
PrmA	PF06325.8	gi|408403355|ref|YP_006861338.1|	-	0.02	14.0	0.1	0.022	13.8	0.1	1.1	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
DUF2179	PF10035.4	gi|408403355|ref|YP_006861338.1|	-	0.084	12.4	1.8	9.2	5.9	0.1	2.8	3	0	0	3	3	3	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2179)
AAA_10	PF12846.2	gi|408403356|ref|YP_006861339.1|	-	6.8e-15	55.2	0.4	5.5e-07	29.3	0.0	2.3	1	1	1	2	2	2	2	AAA-like	domain
DUF87	PF01935.12	gi|408403356|ref|YP_006861339.1|	-	8e-09	35.6	0.0	2.3e-08	34.1	0.0	1.8	1	1	0	1	1	1	1	Domain	of	unknown	function	DUF87
MobB	PF03205.9	gi|408403356|ref|YP_006861339.1|	-	0.01	15.5	0.4	0.025	14.2	0.1	1.8	2	0	0	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_17	PF13207.1	gi|408403356|ref|YP_006861339.1|	-	0.014	16.2	0.1	0.58	10.9	0.0	2.7	3	0	0	3	3	3	0	AAA	domain
DUF853	PF05872.7	gi|408403356|ref|YP_006861339.1|	-	0.014	13.7	0.0	0.29	9.4	0.0	2.1	2	0	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF853)
CbiA	PF01656.18	gi|408403356|ref|YP_006861339.1|	-	0.036	13.4	0.0	0.061	12.7	0.0	1.4	1	0	0	1	1	1	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_14	PF13173.1	gi|408403356|ref|YP_006861339.1|	-	0.065	13.1	0.1	0.21	11.4	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
AAA_29	PF13555.1	gi|408403356|ref|YP_006861339.1|	-	0.071	12.6	0.0	0.15	11.5	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
KTI12	PF08433.5	gi|408403356|ref|YP_006861339.1|	-	0.075	12.2	0.0	0.14	11.2	0.0	1.4	1	0	0	1	1	1	0	Chromatin	associated	protein	KTI12
AAA_22	PF13401.1	gi|408403356|ref|YP_006861339.1|	-	0.08	13.0	0.0	0.38	10.8	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
NurA	PF09376.5	gi|408403357|ref|YP_006861340.1|	-	1.3e-09	37.8	0.3	1.5e-07	31.1	0.2	2.1	1	1	0	1	1	1	1	NurA	domain
HR1	PF02185.11	gi|408403358|ref|YP_006861341.1|	-	0.047	13.4	0.0	0.092	12.5	0.0	1.4	1	0	0	1	1	1	0	Hr1	repeat
Penicillinase_R	PF03965.11	gi|408403358|ref|YP_006861341.1|	-	0.072	13.1	0.0	0.26	11.3	0.0	1.8	2	0	0	2	2	2	0	Penicillinase	repressor
HTH_27	PF13463.1	gi|408403359|ref|YP_006861342.1|	-	0.00086	19.5	0.1	0.0027	17.9	0.0	1.8	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_45	PF14947.1	gi|408403359|ref|YP_006861342.1|	-	0.0022	17.7	0.0	0.03	14.1	0.0	2.2	2	1	0	2	2	2	1	Winged	helix-turn-helix
HTH_34	PF13601.1	gi|408403359|ref|YP_006861342.1|	-	0.021	14.8	0.2	0.18	11.8	0.0	2.4	2	1	0	2	2	2	0	Winged	helix	DNA-binding	domain
TrmB	PF01978.14	gi|408403359|ref|YP_006861342.1|	-	0.056	13.1	0.0	0.15	11.8	0.0	1.8	1	1	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.2	gi|408403359|ref|YP_006861342.1|	-	0.079	12.6	0.0	0.15	11.7	0.0	1.5	1	0	0	1	1	1	0	MarR	family
FokI_C	PF02980.11	gi|408403359|ref|YP_006861342.1|	-	0.1	12.2	0.1	2.8	7.5	0.0	2.3	1	1	1	2	2	2	0	Restriction	endonuclease	FokI,	catalytic	domain
Rio2_N	PF09202.6	gi|408403359|ref|YP_006861342.1|	-	0.1	12.6	0.0	0.29	11.2	0.0	1.8	2	1	0	2	2	2	0	Rio2,	N-terminal
Abi	PF02517.11	gi|408403361|ref|YP_006861344.1|	-	2.2e-06	27.6	3.6	2.2e-06	27.6	2.5	1.8	2	0	0	2	2	2	1	CAAX	protease	self-immunity
DUF3311	PF11755.3	gi|408403361|ref|YP_006861344.1|	-	0.049	13.1	1.2	0.41	10.2	0.7	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3311)
7tm_1	PF00001.16	gi|408403361|ref|YP_006861344.1|	-	0.36	9.9	2.9	0.52	9.4	2.0	1.2	1	0	0	1	1	1	0	7	transmembrane	receptor	(rhodopsin	family)
GatB_N	PF02934.10	gi|408403363|ref|YP_006861346.1|	-	2.9e-74	249.5	0.1	5.5e-74	248.6	0.0	1.4	2	0	0	2	2	2	1	GatB/GatE	catalytic	domain
GatB_Yqey	PF02637.13	gi|408403363|ref|YP_006861346.1|	-	1e-18	67.4	1.9	1e-18	67.4	1.3	1.9	2	0	0	2	2	2	1	GatB	domain
GAD	PF02938.9	gi|408403363|ref|YP_006861346.1|	-	2.1e-07	30.9	0.0	8.8e-07	29.0	0.0	2.1	1	0	0	1	1	1	1	GAD	domain
YqeY	PF09424.5	gi|408403363|ref|YP_006861346.1|	-	0.00048	20.0	1.3	0.00048	20.0	0.9	2.1	2	0	0	2	2	2	1	Yqey-like	protein
Asparaginase	PF00710.15	gi|408403364|ref|YP_006861347.1|	-	1.9e-88	296.3	0.4	2.5e-88	295.9	0.3	1.1	1	0	0	1	1	1	1	Asparaginase
TauE	PF01925.14	gi|408403365|ref|YP_006861348.1|	-	1.1e-30	106.8	25.9	1.3e-30	106.6	18.0	1.0	1	0	0	1	1	1	1	Sulfite	exporter	TauE/SafE
APG9	PF04109.11	gi|408403365|ref|YP_006861348.1|	-	0.72	8.7	5.2	0.37	9.6	0.7	2.2	1	1	1	2	2	2	0	Autophagy	protein	Apg9
HTH_20	PF12840.2	gi|408403368|ref|YP_006861351.1|	-	0.044	13.5	0.0	0.077	12.8	0.0	1.4	1	1	0	1	1	1	0	Helix-turn-helix	domain
zf-BED	PF02892.10	gi|408403369|ref|YP_006861352.1|	-	0.62	9.8	5.1	1.6	8.5	3.5	1.7	1	1	0	1	1	1	0	BED	zinc	finger
DUF2024	PF09630.5	gi|408403370|ref|YP_006861353.1|	-	6.2e-35	118.7	0.7	6.8e-35	118.6	0.5	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF2024)
MarC	PF01914.12	gi|408403371|ref|YP_006861354.1|	-	4.4e-46	156.5	20.1	5.4e-46	156.2	14.0	1.1	1	0	0	1	1	1	1	MarC	family	integral	membrane	protein
FA_desaturase	PF00487.19	gi|408403371|ref|YP_006861354.1|	-	6.3	6.1	7.8	0.39	10.1	1.4	1.8	1	1	1	2	2	2	0	Fatty	acid	desaturase
CTP_transf_2	PF01467.21	gi|408403373|ref|YP_006861356.1|	-	5.1e-19	68.8	0.0	6.5e-19	68.5	0.0	1.2	1	0	0	1	1	1	1	Cytidylyltransferase
RTC	PF01137.16	gi|408403374|ref|YP_006861357.1|	-	3.7e-70	235.2	0.1	4.3e-70	235.0	0.0	1.0	1	0	0	1	1	1	1	RNA	3'-terminal	phosphate	cyclase
RTC_insert	PF05189.8	gi|408403374|ref|YP_006861357.1|	-	4.7e-14	52.2	0.1	9.9e-14	51.2	0.0	1.5	1	0	0	1	1	1	1	RNA	3'-terminal	phosphate	cyclase	(RTC),	insert	domain
CopD	PF05425.8	gi|408403375|ref|YP_006861358.1|	-	2.2e-15	56.7	3.3	4e-15	55.9	2.3	1.4	1	0	0	1	1	1	1	Copper	resistance	protein	D
DUF4149	PF13664.1	gi|408403375|ref|YP_006861358.1|	-	0.00072	19.5	0.6	0.00072	19.5	0.4	1.7	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4149)
DUF989	PF06181.6	gi|408403375|ref|YP_006861358.1|	-	0.097	11.7	1.4	0.12	11.4	0.1	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF989)
UPF0093	PF03653.8	gi|408403375|ref|YP_006861358.1|	-	0.97	9.3	5.1	2.2	8.2	3.5	1.6	1	1	0	1	1	1	0	Uncharacterised	protein	family	(UPF0093)
LEA_2	PF03168.8	gi|408403376|ref|YP_006861359.1|	-	0.00012	22.3	0.0	0.00029	21.1	0.0	1.7	1	1	0	1	1	1	1	Late	embryogenesis	abundant	protein
DUF2393	PF09624.5	gi|408403376|ref|YP_006861359.1|	-	0.00016	21.1	0.0	0.00017	21.1	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2393)
DUF3754	PF12576.3	gi|408403376|ref|YP_006861359.1|	-	0.095	12.3	0.2	0.21	11.2	0.0	1.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3754)
DUF218	PF02698.12	gi|408403377|ref|YP_006861360.1|	-	0.0007	19.1	0.0	0.0011	18.4	0.0	1.3	1	0	0	1	1	1	1	DUF218	domain
IlvN	PF07991.7	gi|408403377|ref|YP_006861360.1|	-	0.054	12.8	0.0	0.11	11.8	0.0	1.5	1	0	0	1	1	1	0	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
DUF3877	PF12993.2	gi|408403378|ref|YP_006861361.1|	-	0.041	13.4	0.3	0.048	13.2	0.2	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function,	E.	rectale	Gene	description	(DUF3877)
SYF2	PF08231.7	gi|408403378|ref|YP_006861361.1|	-	0.059	13.4	0.5	0.069	13.2	0.3	1.2	1	0	0	1	1	1	0	SYF2	splicing	factor
Flavokinase	PF01687.12	gi|408403378|ref|YP_006861361.1|	-	0.095	12.5	0.4	13	5.6	0.1	2.8	1	1	1	2	2	2	0	Riboflavin	kinase
DUF964	PF06133.6	gi|408403378|ref|YP_006861361.1|	-	0.14	12.2	0.6	0.19	11.7	0.4	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF964)
UbiD	PF01977.11	gi|408403379|ref|YP_006861362.1|	-	5.5e-106	354.4	0.2	6.4e-106	354.2	0.1	1.0	1	0	0	1	1	1	1	3-octaprenyl-4-hydroxybenzoate	carboxy-lyase
DUF3386	PF11866.3	gi|408403380|ref|YP_006861363.1|	-	0.025	13.8	0.0	0.037	13.2	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3386)
Phage_T4_gp36	PF03903.8	gi|408403380|ref|YP_006861363.1|	-	0.051	13.6	0.1	0.059	13.4	0.0	1.0	1	0	0	1	1	1	0	Phage	T4	tail	fibre
Zn_ribbon_recom	PF13408.1	gi|408403381|ref|YP_006861364.1|	-	0.013	15.7	0.7	0.013	15.7	0.5	1.9	2	1	0	2	2	2	0	Recombinase	zinc	beta	ribbon	domain
Cys_rich_CPCC	PF14206.1	gi|408403381|ref|YP_006861364.1|	-	0.015	14.8	1.3	0.065	12.7	0.2	2.1	2	0	0	2	2	2	0	Cysteine-rich	CPCC
Diphthamide_syn	PF01866.12	gi|408403382|ref|YP_006861365.1|	-	6.1e-75	252.2	0.1	7.4e-75	252.0	0.1	1.0	1	0	0	1	1	1	1	Putative	diphthamide	synthesis	protein
Fe-ADH_2	PF13685.1	gi|408403382|ref|YP_006861365.1|	-	0.11	11.7	0.1	0.2	10.8	0.0	1.4	1	0	0	1	1	1	0	Iron-containing	alcohol	dehydrogenase
Mu-like_Com	PF10122.4	gi|408403382|ref|YP_006861365.1|	-	0.12	11.4	0.0	0.27	10.3	0.0	1.6	1	0	0	1	1	1	0	Mu-like	prophage	protein	Com
Fer4_7	PF12838.2	gi|408403383|ref|YP_006861366.1|	-	1.6e-10	41.1	14.3	4.6e-07	30.1	5.4	1.7	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4	PF00037.22	gi|408403383|ref|YP_006861366.1|	-	8.3e-10	37.8	11.8	9.6e-08	31.3	1.3	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_9	PF13187.1	gi|408403383|ref|YP_006861366.1|	-	4.8e-09	36.3	5.1	7.3e-09	35.7	3.5	1.3	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|408403383|ref|YP_006861366.1|	-	1.4e-07	31.1	5.8	2.8e-07	30.2	4.1	1.4	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_8	PF13183.1	gi|408403383|ref|YP_006861366.1|	-	1.9e-07	30.9	1.1	0.015	15.3	0.2	2.1	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.2	gi|408403383|ref|YP_006861366.1|	-	9.1e-07	28.4	12.0	2.1e-05	24.1	0.9	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_17	PF13534.1	gi|408403383|ref|YP_006861366.1|	-	1.8e-06	28.2	0.6	0.027	14.7	0.0	2.1	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_21	PF14697.1	gi|408403383|ref|YP_006861366.1|	-	5.7e-06	26.0	12.0	4.8e-05	23.1	3.9	1.7	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_18	PF13746.1	gi|408403383|ref|YP_006861366.1|	-	8e-06	26.1	3.0	0.018	15.4	0.0	2.2	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_3	PF12798.2	gi|408403383|ref|YP_006861366.1|	-	1.8e-05	24.9	12.3	0.0031	17.9	1.1	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_2	PF12797.2	gi|408403383|ref|YP_006861366.1|	-	8.5e-05	22.2	9.5	0.0021	17.8	0.7	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_15	PF13459.1	gi|408403383|ref|YP_006861366.1|	-	0.00044	20.7	11.4	0.0028	18.1	0.9	2.2	1	1	1	2	2	2	2	4Fe-4S	single	cluster	domain
Fer4_4	PF12800.2	gi|408403383|ref|YP_006861366.1|	-	0.0022	18.1	8.8	0.047	14.0	0.2	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_16	PF13484.1	gi|408403383|ref|YP_006861366.1|	-	0.0027	18.4	7.7	0.41	11.4	1.1	2.4	1	1	1	3	3	3	3	4Fe-4S	double	cluster	binding	domain
Fer4_13	PF13370.1	gi|408403383|ref|YP_006861366.1|	-	0.023	15.0	8.4	0.11	12.9	0.4	2.2	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain
A2M_N	PF01835.14	gi|408403384|ref|YP_006861367.1|	-	2.1e-12	47.1	0.5	2.1e-11	43.9	0.0	2.3	1	1	1	2	2	2	1	MG2	domain
Alph_Pro_TM	PF09608.5	gi|408403384|ref|YP_006861367.1|	-	0.00034	20.1	3.4	0.001	18.6	0.3	2.3	1	1	0	2	2	2	1	Putative	transmembrane	protein	(Alph_Pro_TM)
FlgD_ig	PF13860.1	gi|408403384|ref|YP_006861367.1|	-	0.0019	17.8	6.9	0.0033	17.1	0.6	3.2	2	2	0	2	2	2	1	FlgD	Ig-like	domain
DUF3426	PF11906.3	gi|408403384|ref|YP_006861367.1|	-	0.0056	16.3	0.2	0.015	14.9	0.1	1.9	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF3426)
CopC	PF04234.7	gi|408403384|ref|YP_006861367.1|	-	0.013	16.1	3.4	0.035	14.7	0.1	2.8	3	0	0	3	3	3	0	CopC	domain
DUF3244	PF11589.3	gi|408403384|ref|YP_006861367.1|	-	0.026	14.2	4.4	0.13	11.9	0.0	3.1	2	1	0	3	3	3	0	Domain	of	unknown	function	(DUF3244)
Gmad2	PF10648.4	gi|408403384|ref|YP_006861367.1|	-	0.083	13.0	2.4	0.13	12.4	0.1	2.6	3	1	1	4	4	4	0	Immunoglobulin-like	domain	of	bacterial	spore	germination
Big_3_4	PF13754.1	gi|408403384|ref|YP_006861367.1|	-	0.13	12.5	0.2	0.13	12.5	0.1	3.2	3	2	1	4	4	4	0	Bacterial	Ig-like	domain	(group	3)
A2M_N_2	PF07703.9	gi|408403384|ref|YP_006861367.1|	-	0.2	11.4	3.3	1.7	8.4	2.3	2.4	1	1	0	1	1	1	0	Alpha-2-macroglobulin	family	N-terminal	region
HTH_45	PF14947.1	gi|408403385|ref|YP_006861368.1|	-	9.3e-23	79.8	1.6	1.2e-22	79.5	1.1	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF4364	PF14277.1	gi|408403385|ref|YP_006861368.1|	-	0.00049	19.7	1.3	0.00056	19.5	0.9	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4364)
HTH_24	PF13412.1	gi|408403385|ref|YP_006861368.1|	-	0.0022	17.3	0.0	0.0035	16.6	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
ER	PF01133.12	gi|408403385|ref|YP_006861368.1|	-	0.046	13.4	0.1	0.055	13.1	0.0	1.2	1	0	0	1	1	1	0	Enhancer	of	rudimentary
DUF2250	PF10007.4	gi|408403385|ref|YP_006861368.1|	-	0.064	13.1	0.0	0.087	12.7	0.0	1.3	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
Acetyltransf_13	PF13880.1	gi|408403385|ref|YP_006861368.1|	-	0.098	12.4	0.1	4.9	6.9	0.0	2.1	2	0	0	2	2	2	0	ESCO1/2	acetyl-transferase
Tn7_Tnp_TnsA_N	PF08722.6	gi|408403389|ref|YP_006861372.1|	-	0.026	14.4	0.3	0.046	13.6	0.0	1.5	2	0	0	2	2	2	0	TnsA	endonuclease	N	terminal
DUF1703	PF08011.6	gi|408403389|ref|YP_006861372.1|	-	0.075	12.7	0.8	0.16	11.7	0.2	1.7	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1703)
Peptidase_S64	PF08192.6	gi|408403389|ref|YP_006861372.1|	-	0.095	11.0	1.6	0.11	10.7	1.1	1.0	1	0	0	1	1	1	0	Peptidase	family	S64
E6	PF00518.12	gi|408403391|ref|YP_006861374.1|	-	0.075	13.3	0.2	0.075	13.3	0.2	1.1	1	0	0	1	1	1	0	Early	Protein	(E6)
Ribosomal_L44	PF00935.14	gi|408403391|ref|YP_006861374.1|	-	0.096	12.7	0.1	0.12	12.4	0.1	1.2	1	1	0	1	1	1	0	Ribosomal	protein	L44
DUF35_N	PF12172.3	gi|408403391|ref|YP_006861374.1|	-	0.2	11.6	1.6	0.57	10.1	1.1	1.7	1	1	1	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
HTH_45	PF14947.1	gi|408403392|ref|YP_006861375.1|	-	3.1e-13	49.3	0.0	3.7e-13	49.0	0.0	1.0	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_5	PF01022.15	gi|408403392|ref|YP_006861375.1|	-	0.0015	18.1	0.0	0.0023	17.5	0.0	1.2	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
DUF4364	PF14277.1	gi|408403392|ref|YP_006861375.1|	-	0.0017	17.9	0.0	0.002	17.7	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4364)
PadR	PF03551.9	gi|408403392|ref|YP_006861375.1|	-	0.02	14.6	0.0	0.028	14.2	0.0	1.3	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
RP-C	PF03428.8	gi|408403392|ref|YP_006861375.1|	-	0.027	13.9	0.0	0.049	13.0	0.0	1.6	1	1	0	1	1	1	0	Replication	protein	C	N-terminal	domain
HTH_12	PF08461.5	gi|408403392|ref|YP_006861375.1|	-	0.087	12.5	0.0	0.14	11.8	0.0	1.4	1	0	0	1	1	1	0	Ribonuclease	R	winged-helix	domain
Mrr_N	PF14338.1	gi|408403392|ref|YP_006861375.1|	-	0.099	12.7	0.0	0.25	11.4	0.0	1.6	1	1	1	2	2	2	0	Mrr	N-terminal	domain
HTH_27	PF13463.1	gi|408403392|ref|YP_006861375.1|	-	0.1	12.9	0.0	0.13	12.6	0.0	1.1	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_20	PF12840.2	gi|408403392|ref|YP_006861375.1|	-	0.13	12.0	0.0	0.21	11.3	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF2250	PF10007.4	gi|408403392|ref|YP_006861375.1|	-	0.13	12.1	0.2	3.1	7.7	0.2	2.1	1	1	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
SlyX	PF04102.7	gi|408403393|ref|YP_006861376.1|	-	0.011	16.0	1.3	0.24	11.8	0.0	2.8	3	0	0	3	3	3	0	SlyX
zf-UBP	PF02148.14	gi|408403393|ref|YP_006861376.1|	-	0.015	15.3	0.0	0.048	13.7	0.0	1.8	2	0	0	2	2	2	0	Zn-finger	in	ubiquitin-hydrolases	and	other	protein
Pkinase	PF00069.20	gi|408403403|ref|YP_006861386.1|	-	6.9e-47	159.7	0.0	8.6e-47	159.4	0.0	1.1	1	0	0	1	1	1	1	Protein	kinase	domain
Pkinase_Tyr	PF07714.12	gi|408403403|ref|YP_006861386.1|	-	3.7e-27	95.0	0.0	4.5e-27	94.7	0.0	1.0	1	0	0	1	1	1	1	Protein	tyrosine	kinase
APH	PF01636.18	gi|408403403|ref|YP_006861386.1|	-	2.9e-06	27.1	0.2	0.035	13.8	0.3	2.1	1	1	0	2	2	2	2	Phosphotransferase	enzyme	family
Kdo	PF06293.9	gi|408403403|ref|YP_006861386.1|	-	0.012	14.7	0.1	0.049	12.6	0.1	1.8	2	0	0	2	2	2	0	Lipopolysaccharide	kinase	(Kdo/WaaP)	family
OrfB_IS605	PF01385.14	gi|408403404|ref|YP_006861387.1|	-	1.6e-13	50.5	0.3	2.7e-13	49.8	0.2	1.3	1	1	0	1	1	1	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.6	gi|408403405|ref|YP_006861388.1|	-	4.9e-23	80.5	0.2	8.9e-23	79.7	0.2	1.4	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.14	gi|408403405|ref|YP_006861388.1|	-	0.0016	17.9	0.8	0.0024	17.2	0.2	1.6	2	0	0	2	2	2	1	Probable	transposase
TF_Zn_Ribbon	PF08271.7	gi|408403405|ref|YP_006861388.1|	-	0.0018	17.5	0.4	0.019	14.2	0.0	2.1	2	0	0	2	2	2	1	TFIIB	zinc-binding
DZR	PF12773.2	gi|408403405|ref|YP_006861388.1|	-	0.0054	16.5	0.2	0.009	15.8	0.1	1.3	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-ribbon_3	PF13248.1	gi|408403405|ref|YP_006861388.1|	-	0.0063	15.6	1.8	0.038	13.2	1.4	1.9	1	1	1	2	2	2	2	zinc-ribbon	domain
HypA	PF01155.14	gi|408403405|ref|YP_006861388.1|	-	0.011	15.4	0.1	0.015	15.0	0.0	1.1	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
zinc_ribbon_2	PF13240.1	gi|408403405|ref|YP_006861388.1|	-	0.023	14.1	1.3	0.36	10.3	1.2	2.1	1	1	2	3	3	3	0	zinc-ribbon	domain
FYVE	PF01363.16	gi|408403405|ref|YP_006861388.1|	-	0.034	14.0	0.1	0.049	13.5	0.0	1.3	1	0	0	1	1	1	0	FYVE	zinc	finger
Prok-RING_1	PF14446.1	gi|408403405|ref|YP_006861388.1|	-	0.041	13.6	1.1	0.062	13.0	0.7	1.3	1	0	0	1	1	1	0	Prokaryotic	RING	finger	family	1
Nudix_N_2	PF14803.1	gi|408403405|ref|YP_006861388.1|	-	0.052	13.2	3.1	0.72	9.5	2.1	2.2	1	1	0	1	1	1	0	Nudix	N-terminal
Ribosomal_L37e	PF01907.14	gi|408403405|ref|YP_006861388.1|	-	0.064	13.0	0.6	0.18	11.6	0.4	1.7	1	0	0	1	1	1	0	Ribosomal	protein	L37e
zf-NADH-PPase	PF09297.6	gi|408403405|ref|YP_006861388.1|	-	0.081	12.4	2.4	0.16	11.5	1.7	1.5	1	1	0	1	1	1	0	NADH	pyrophosphatase	zinc	ribbon	domain
Rpr2	PF04032.11	gi|408403405|ref|YP_006861388.1|	-	0.086	12.7	1.0	3.2	7.7	0.7	2.4	1	1	0	1	1	1	0	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
NinF	PF05810.7	gi|408403405|ref|YP_006861388.1|	-	0.1	12.4	0.5	0.17	11.7	0.3	1.3	1	0	0	1	1	1	0	NinF	protein
DUF72	PF01904.13	gi|408403408|ref|YP_006861391.1|	-	1.9e-19	70.3	0.0	2.1e-19	70.2	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF72
DUF72	PF01904.13	gi|408403409|ref|YP_006861392.1|	-	2.5e-08	33.9	0.0	2.5e-08	33.9	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF72
BLVR	PF06375.6	gi|408403413|ref|YP_006861396.1|	-	0.044	13.6	2.3	0.06	13.1	1.6	1.2	1	0	0	1	1	1	0	Bovine	leukaemia	virus	receptor	(BLVR)
Baculo_LEF-2	PF03041.9	gi|408403413|ref|YP_006861396.1|	-	0.11	12.1	0.3	0.14	11.8	0.2	1.2	1	0	0	1	1	1	0	lef-2
DivIVA	PF05103.8	gi|408403414|ref|YP_006861397.1|	-	0.004	17.1	0.5	0.0064	16.5	0.3	1.2	1	0	0	1	1	1	1	DivIVA	protein
Cgr1	PF03879.9	gi|408403414|ref|YP_006861397.1|	-	0.076	13.1	0.6	0.11	12.6	0.4	1.3	1	0	0	1	1	1	0	Cgr1	family
UvrD_C	PF13361.1	gi|408403414|ref|YP_006861397.1|	-	0.088	12.2	0.5	0.096	12.1	0.3	1.0	1	0	0	1	1	1	0	UvrD-like	helicase	C-terminal	domain
DUF2129	PF09902.4	gi|408403414|ref|YP_006861397.1|	-	0.26	11.0	1.9	0.67	9.7	0.9	1.9	1	1	1	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2129)
DUF4157	PF13699.1	gi|408403415|ref|YP_006861398.1|	-	0.0027	17.8	0.0	0.0029	17.7	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4157)
CBS	PF00571.23	gi|408403417|ref|YP_006861400.1|	-	1.1e-16	60.2	1.6	6.7e-07	28.9	0.1	3.0	3	0	0	3	3	3	2	CBS	domain
HTH_3	PF01381.17	gi|408403417|ref|YP_006861400.1|	-	1.8e-13	50.1	0.3	4.8e-13	48.7	0.2	1.8	1	0	0	1	1	1	1	Helix-turn-helix
HTH_19	PF12844.2	gi|408403417|ref|YP_006861400.1|	-	1.4e-09	37.8	0.2	2.3e-08	33.9	0.1	2.3	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_31	PF13560.1	gi|408403417|ref|YP_006861400.1|	-	9.5e-08	32.1	0.0	1.8e-07	31.2	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_25	PF13413.1	gi|408403417|ref|YP_006861400.1|	-	2.2e-05	23.9	0.5	0.0012	18.3	0.0	2.3	1	1	1	2	2	2	1	Helix-turn-helix	domain
Pou	PF00157.12	gi|408403417|ref|YP_006861400.1|	-	0.056	13.1	0.4	0.18	11.5	0.3	1.9	1	1	0	1	1	1	0	Pou	domain	-	N-terminal	to	homeobox	domain
Arc_PepC_II	PF06847.6	gi|408403421|ref|YP_006861404.1|	-	1.3e-07	31.9	0.0	3.9e-07	30.4	0.0	1.8	1	1	0	1	1	1	1	Archaeal	Peptidase	A24	C-terminus	Type	II
Peptidase_A24	PF01478.13	gi|408403421|ref|YP_006861404.1|	-	0.0003	20.9	10.5	0.0003	20.9	7.3	1.9	2	1	0	2	2	2	1	Type	IV	leader	peptidase	family
Big_1	PF02369.11	gi|408403423|ref|YP_006861406.1|	-	1.3e-06	28.2	0.3	1.3e-06	28.2	0.2	4.0	4	0	0	4	4	4	2	Bacterial	Ig-like	domain	(group	1)
CarboxypepD_reg	PF13620.1	gi|408403423|ref|YP_006861406.1|	-	0.00013	21.9	0.6	0.00013	21.9	0.4	3.8	3	1	1	4	4	4	1	Carboxypeptidase	regulatory-like	domain
DUF4198	PF10670.4	gi|408403423|ref|YP_006861406.1|	-	0.00052	20.0	0.0	0.0014	18.6	0.0	1.7	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4198)
DUF824	PF05688.6	gi|408403423|ref|YP_006861406.1|	-	0.017	14.7	2.0	0.14	11.8	0.2	3.3	3	0	0	3	3	3	0	Salmonella	repeat	of	unknown	function	(DUF824)
HTH_45	PF14947.1	gi|408403424|ref|YP_006861407.1|	-	3.6e-21	74.7	0.8	4.3e-21	74.5	0.6	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_27	PF13463.1	gi|408403424|ref|YP_006861407.1|	-	0.011	15.9	0.0	0.016	15.4	0.0	1.4	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain
DUF4364	PF14277.1	gi|408403424|ref|YP_006861407.1|	-	0.037	13.6	0.0	0.041	13.4	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
Aldolase	PF01081.14	gi|408403424|ref|YP_006861407.1|	-	0.039	13.1	0.0	0.043	12.9	0.0	1.0	1	0	0	1	1	1	0	KDPG	and	KHG	aldolase
HTH_24	PF13412.1	gi|408403424|ref|YP_006861407.1|	-	0.042	13.2	0.2	0.078	12.3	0.0	1.6	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
Penicillinase_R	PF03965.11	gi|408403424|ref|YP_006861407.1|	-	0.091	12.8	0.0	0.1	12.7	0.0	1.1	1	0	0	1	1	1	0	Penicillinase	repressor
YfdX	PF10938.3	gi|408403425|ref|YP_006861408.1|	-	0.0042	16.7	5.0	0.23	11.0	0.3	2.9	1	1	2	3	3	3	3	YfdX	protein
FliS	PF02561.9	gi|408403425|ref|YP_006861408.1|	-	0.83	9.5	5.5	7	6.5	0.1	3.2	1	1	1	3	3	3	0	Flagellar	protein	FliS
Cytochrom_B562	PF07361.6	gi|408403425|ref|YP_006861408.1|	-	0.9	9.9	8.5	1.9	8.9	0.3	3.7	3	1	1	4	4	4	0	Cytochrome	b562
DUF4398	PF14346.1	gi|408403425|ref|YP_006861408.1|	-	7.3	6.7	13.4	1.4	8.9	0.4	3.4	3	1	1	4	4	4	0	Domain	of	unknown	function	(DUF4398)
DUF2232	PF09991.4	gi|408403427|ref|YP_006861410.1|	-	0.25	10.3	0.1	0.25	10.3	0.1	1.6	2	0	0	2	2	2	0	Predicted	membrane	protein	(DUF2232)
HhH-GPD	PF00730.20	gi|408403428|ref|YP_006861411.1|	-	4.5e-28	97.6	0.0	6.3e-28	97.2	0.0	1.2	1	0	0	1	1	1	1	HhH-GPD	superfamily	base	excision	DNA	repair	protein
HHH	PF00633.18	gi|408403428|ref|YP_006861411.1|	-	5.3e-09	35.2	0.0	6.8e-08	31.7	0.0	2.5	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
HHH_5	PF14520.1	gi|408403428|ref|YP_006861411.1|	-	6.3e-05	23.0	0.0	0.0004	20.4	0.0	2.1	1	1	0	1	1	1	1	Helix-hairpin-helix	domain
DUF2400	PF09674.5	gi|408403428|ref|YP_006861411.1|	-	0.00079	19.1	0.1	0.0042	16.8	0.0	1.9	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF2400)
HHH_2	PF12826.2	gi|408403428|ref|YP_006861411.1|	-	0.043	13.6	0.0	8.4	6.3	0.0	2.4	2	0	0	2	2	2	0	Helix-hairpin-helix	motif
DUF3349	PF11829.3	gi|408403428|ref|YP_006861411.1|	-	0.093	13.1	0.0	0.2	12.1	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3349)
OrfB_IS605	PF01385.14	gi|408403429|ref|YP_006861412.1|	-	4.9e-08	32.6	4.1	8.8e-08	31.8	2.9	1.6	1	1	0	1	1	1	1	Probable	transposase
Ferritin	PF00210.19	gi|408403429|ref|YP_006861412.1|	-	0.048	13.4	0.0	0.082	12.6	0.0	1.4	1	0	0	1	1	1	0	Ferritin-like	domain
DUF521	PF04412.8	gi|408403430|ref|YP_006861413.1|	-	4.7e-110	367.8	0.7	1.5e-109	366.2	0.5	1.6	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF521)
DUF126	PF01989.11	gi|408403431|ref|YP_006861414.1|	-	1.3e-28	98.5	0.1	1.9e-28	97.9	0.1	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF126
HTH_OrfB_IS605	PF12323.3	gi|408403432|ref|YP_006861415.1|	-	2.8e-14	52.1	1.3	6.2e-14	51.0	0.4	1.8	1	1	1	2	2	2	1	Helix-turn-helix	domain
HemolysinCabind	PF00353.14	gi|408403433|ref|YP_006861416.1|	-	9.4e-08	31.7	61.8	0.047	14.0	1.0	6.9	5	1	1	6	6	6	5	Hemolysin-type	calcium-binding	repeat	(2	copies)
Reprolysin_5	PF13688.1	gi|408403433|ref|YP_006861416.1|	-	0.0019	18.1	0.3	0.0046	16.9	0.2	1.6	1	0	0	1	1	1	1	Metallo-peptidase	family	M12
Peptidase_M66	PF10462.4	gi|408403433|ref|YP_006861416.1|	-	0.0021	16.9	3.8	0.0038	16.1	2.6	1.3	1	0	0	1	1	1	1	Peptidase	M66
Reprolysin_3	PF13582.1	gi|408403433|ref|YP_006861416.1|	-	0.005	17.3	0.1	0.005	17.3	0.1	2.8	3	0	0	3	3	3	1	Metallo-peptidase	family	M12B	Reprolysin-like
Reprolysin_2	PF13574.1	gi|408403433|ref|YP_006861416.1|	-	0.011	15.8	0.0	0.027	14.5	0.0	1.6	1	0	0	1	1	1	0	Metallo-peptidase	family	M12B	Reprolysin-like
Peptidase_M10	PF00413.19	gi|408403433|ref|YP_006861416.1|	-	0.056	13.1	0.0	0.084	12.5	0.0	1.3	1	0	0	1	1	1	0	Matrixin
Reprolysin_4	PF13583.1	gi|408403433|ref|YP_006861416.1|	-	0.07	12.6	0.1	0.19	11.2	0.0	1.7	1	0	0	1	1	1	0	Metallo-peptidase	family	M12B	Reprolysin-like
DUF4144	PF13642.1	gi|408403433|ref|YP_006861416.1|	-	0.14	12.5	0.0	7	7.0	0.0	2.3	2	0	0	2	2	2	0	protein	structure	with	unknown	function
HTH_45	PF14947.1	gi|408403434|ref|YP_006861417.1|	-	1.5e-13	50.3	0.0	1.6e-13	50.2	0.0	1.0	1	0	0	1	1	1	1	Winged	helix-turn-helix
PadR	PF03551.9	gi|408403434|ref|YP_006861417.1|	-	0.0023	17.6	0.0	0.0029	17.3	0.0	1.2	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
DUF4364	PF14277.1	gi|408403434|ref|YP_006861417.1|	-	0.013	15.1	0.0	0.015	14.9	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
HTH_27	PF13463.1	gi|408403434|ref|YP_006861417.1|	-	0.018	15.3	0.0	0.028	14.7	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
DUF1495	PF07381.6	gi|408403434|ref|YP_006861417.1|	-	0.026	14.1	0.0	0.034	13.8	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain	(DUF1495)
HTH_IclR	PF09339.5	gi|408403434|ref|YP_006861417.1|	-	0.1	12.2	0.0	0.19	11.3	0.0	1.5	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
RQC	PF09382.5	gi|408403434|ref|YP_006861417.1|	-	0.1	12.3	0.0	0.13	12.0	0.0	1.1	1	0	0	1	1	1	0	RQC	domain
Rio2_N	PF09202.6	gi|408403434|ref|YP_006861417.1|	-	0.13	12.3	0.0	0.16	12.0	0.0	1.1	1	0	0	1	1	1	0	Rio2,	N-terminal
HxlR	PF01638.12	gi|408403434|ref|YP_006861417.1|	-	0.13	11.8	0.0	0.16	11.6	0.0	1.2	1	0	0	1	1	1	0	HxlR-like	helix-turn-helix
DUF167	PF02594.11	gi|408403435|ref|YP_006861418.1|	-	1.1e-16	60.4	0.1	1.2e-16	60.3	0.1	1.0	1	0	0	1	1	1	1	Uncharacterised	ACR,	YggU	family	COG1872
TF_Zn_Ribbon	PF08271.7	gi|408403436|ref|YP_006861419.1|	-	1.5e-06	27.3	0.6	2.1e-06	26.9	0.4	1.2	1	0	0	1	1	1	1	TFIIB	zinc-binding
OrfB_Zn_ribbon	PF07282.6	gi|408403436|ref|YP_006861419.1|	-	0.00052	19.6	0.3	0.00088	18.8	0.2	1.4	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
DZR	PF12773.2	gi|408403436|ref|YP_006861419.1|	-	0.00062	19.5	0.5	0.00088	19.0	0.3	1.3	1	0	0	1	1	1	1	Double	zinc	ribbon
Zn-ribbon_8	PF09723.5	gi|408403436|ref|YP_006861419.1|	-	0.0057	16.5	2.1	1.3	9.0	0.1	2.4	2	0	0	2	2	2	2	Zinc	ribbon	domain
Zn_Tnp_IS1595	PF12760.2	gi|408403436|ref|YP_006861419.1|	-	0.0061	16.3	0.3	0.0093	15.7	0.2	1.3	1	0	0	1	1	1	1	Transposase	zinc-ribbon	domain
Nudix_N_2	PF14803.1	gi|408403436|ref|YP_006861419.1|	-	0.014	15.1	3.8	0.13	11.9	2.6	2.2	1	1	0	1	1	1	0	Nudix	N-terminal
FYDLN_acid	PF09538.5	gi|408403436|ref|YP_006861419.1|	-	0.028	14.9	0.9	0.035	14.6	0.6	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(FYDLN_acid)
Zn_Tnp_IS91	PF14319.1	gi|408403436|ref|YP_006861419.1|	-	0.029	13.8	0.1	0.043	13.3	0.1	1.3	1	0	0	1	1	1	0	Transposase	zinc-binding	domain
Prim_Zn_Ribbon	PF08273.7	gi|408403436|ref|YP_006861419.1|	-	0.044	13.8	1.1	0.083	12.9	0.7	1.4	1	0	0	1	1	1	0	Zinc-binding	domain	of	primase-helicase
zf-IS66	PF13005.2	gi|408403436|ref|YP_006861419.1|	-	0.065	13.2	0.4	0.54	10.2	0.1	2.1	2	0	0	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
zf-NADH-PPase	PF09297.6	gi|408403436|ref|YP_006861419.1|	-	0.12	11.9	1.4	0.73	9.4	0.2	2.2	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
zf-ribbon_3	PF13248.1	gi|408403436|ref|YP_006861419.1|	-	0.19	10.9	6.4	1.1	8.5	4.5	2.0	1	1	0	1	1	1	0	zinc-ribbon	domain
Auto_anti-p27	PF06677.7	gi|408403436|ref|YP_006861419.1|	-	0.2	11.4	1.7	0.33	10.7	1.2	1.4	1	0	0	1	1	1	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
FYVE	PF01363.16	gi|408403436|ref|YP_006861419.1|	-	0.29	11.0	2.7	0.42	10.5	1.8	1.5	1	1	0	1	1	1	0	FYVE	zinc	finger
PhnA_Zn_Ribbon	PF08274.7	gi|408403436|ref|YP_006861419.1|	-	0.41	10.4	2.7	2.1	8.2	1.9	1.9	1	1	0	1	1	1	0	PhnA	Zinc-Ribbon
RNA_POL_M_15KD	PF02150.11	gi|408403436|ref|YP_006861419.1|	-	1.4	8.6	5.2	3.4	7.4	3.6	1.6	1	1	0	1	1	1	0	RNA	polymerases	M/15	Kd	subunit
zinc_ribbon_2	PF13240.1	gi|408403436|ref|YP_006861419.1|	-	2.7	7.6	9.4	0.29	10.6	1.0	2.2	1	1	0	1	1	1	0	zinc-ribbon	domain
UPF0547	PF10571.4	gi|408403436|ref|YP_006861419.1|	-	8.1	6.2	6.3	70	3.2	4.5	2.0	1	1	0	1	1	1	0	Uncharacterised	protein	family	UPF0547
AsnC_trans_reg	PF01037.16	gi|408403437|ref|YP_006861420.1|	-	4.7e-15	55.0	0.1	6.9e-15	54.5	0.1	1.3	1	0	0	1	1	1	1	AsnC	family
HTH_AsnC-type	PF13404.1	gi|408403437|ref|YP_006861420.1|	-	9.7e-13	47.4	0.5	1.9e-12	46.4	0.3	1.5	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_24	PF13412.1	gi|408403437|ref|YP_006861420.1|	-	5.4e-12	44.9	0.2	1.2e-11	43.8	0.2	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.2	gi|408403437|ref|YP_006861420.1|	-	1.2e-06	28.2	0.1	3.4e-06	26.7	0.1	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.2	gi|408403437|ref|YP_006861420.1|	-	6.4e-06	25.7	0.1	1.2e-05	24.8	0.1	1.5	1	0	0	1	1	1	1	MarR	family
HTH_5	PF01022.15	gi|408403437|ref|YP_006861420.1|	-	2.6e-05	23.7	0.0	4.8e-05	22.9	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_34	PF13601.1	gi|408403437|ref|YP_006861420.1|	-	0.00014	21.8	0.2	0.0072	16.3	0.0	2.3	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_11	PF08279.7	gi|408403437|ref|YP_006861420.1|	-	0.00021	20.8	0.3	0.0005	19.6	0.1	1.8	2	0	0	2	2	2	1	HTH	domain
MarR	PF01047.17	gi|408403437|ref|YP_006861420.1|	-	0.00042	19.9	0.8	0.0032	17.1	0.1	2.3	2	1	1	3	3	3	1	MarR	family
HTH_IclR	PF09339.5	gi|408403437|ref|YP_006861420.1|	-	0.00066	19.2	0.0	0.0013	18.2	0.0	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_27	PF13463.1	gi|408403437|ref|YP_006861420.1|	-	0.0042	17.3	0.2	0.053	13.8	0.0	2.2	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_Tnp_ISL3	PF13542.1	gi|408403437|ref|YP_006861420.1|	-	0.0052	15.9	0.0	0.01	15.0	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	transposase	family	ISL3
Sigma70_r4_2	PF08281.7	gi|408403437|ref|YP_006861420.1|	-	0.0059	16.0	0.1	0.014	14.8	0.0	1.7	1	0	0	1	1	1	1	Sigma-70,	region	4
GerE	PF00196.14	gi|408403437|ref|YP_006861420.1|	-	0.0065	15.7	0.0	0.017	14.4	0.0	1.7	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	luxR	family
RepL	PF05732.6	gi|408403437|ref|YP_006861420.1|	-	0.015	14.5	0.5	0.61	9.2	0.0	2.1	2	0	0	2	2	2	0	Firmicute	plasmid	replication	protein	(RepL)
Fe_dep_repress	PF01325.14	gi|408403437|ref|YP_006861420.1|	-	0.024	14.5	0.2	0.19	11.7	0.0	2.2	2	0	0	2	2	2	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
TrmB	PF01978.14	gi|408403437|ref|YP_006861420.1|	-	0.026	14.2	0.0	0.054	13.1	0.0	1.5	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
Sigma70_r4	PF04545.11	gi|408403437|ref|YP_006861420.1|	-	0.056	12.7	0.0	0.11	11.7	0.0	1.5	1	0	0	1	1	1	0	Sigma-70,	region	4
B-block_TFIIIC	PF04182.7	gi|408403437|ref|YP_006861420.1|	-	0.074	12.9	0.0	0.12	12.2	0.0	1.4	1	0	0	1	1	1	0	B-block	binding	subunit	of	TFIIIC
DUF2774	PF11242.3	gi|408403437|ref|YP_006861420.1|	-	0.087	12.8	0.0	0.29	11.1	0.0	1.9	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2774)
HTH_10	PF04967.7	gi|408403437|ref|YP_006861420.1|	-	0.094	12.3	0.0	0.26	10.8	0.0	1.7	1	0	0	1	1	1	0	HTH	DNA	binding	domain
ATP_bind_3	PF01171.15	gi|408403438|ref|YP_006861421.1|	-	4.6e-20	71.8	0.0	6.9e-20	71.2	0.0	1.3	1	0	0	1	1	1	1	PP-loop	family
tRNA_Me_trans	PF03054.11	gi|408403438|ref|YP_006861421.1|	-	0.0042	15.7	0.4	0.0089	14.6	0.0	1.7	2	0	0	2	2	2	1	tRNA	methyl	transferase
QueC	PF06508.8	gi|408403438|ref|YP_006861421.1|	-	0.053	12.8	0.0	0.17	11.1	0.0	1.9	1	0	0	1	1	1	0	Queuosine	biosynthesis	protein	QueC
DUF2392	PF10288.4	gi|408403438|ref|YP_006861421.1|	-	0.053	13.8	0.1	0.14	12.4	0.0	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2392)
RecR	PF02132.10	gi|408403438|ref|YP_006861421.1|	-	0.27	10.6	15.8	0.052	12.9	1.2	3.5	4	0	0	4	4	4	0	RecR	protein
DZR	PF12773.2	gi|408403438|ref|YP_006861421.1|	-	1.8	8.4	9.2	13	5.7	0.5	3.4	3	0	0	3	3	3	0	Double	zinc	ribbon
DUF4206	PF13901.1	gi|408403438|ref|YP_006861421.1|	-	8.2	5.9	9.2	7.4	6.0	0.2	3.0	3	1	1	4	4	4	0	Domain	of	unknown	function	(DUF4206)
HemolysinCabind	PF00353.14	gi|408403439|ref|YP_006861422.1|	-	7.1e-15	53.8	89.1	0.00019	21.4	1.5	11.3	4	2	8	15	15	15	13	Hemolysin-type	calcium-binding	repeat	(2	copies)
ABM	PF03992.11	gi|408403440|ref|YP_006861423.1|	-	3.9e-08	33.2	0.0	4.4e-08	33.0	0.0	1.0	1	0	0	1	1	1	1	Antibiotic	biosynthesis	monooxygenase
Mu-like_gpT	PF10124.4	gi|408403440|ref|YP_006861423.1|	-	0.079	11.9	0.0	0.085	11.8	0.0	1.0	1	0	0	1	1	1	0	Mu-like	prophage	major	head	subunit	gpT
ProRS-C_1	PF09180.6	gi|408403444|ref|YP_006861427.1|	-	0.1	12.5	0.1	6.9	6.6	0.0	2.0	2	0	0	2	2	2	0	Prolyl-tRNA	synthetase,	C-terminal
DUF955	PF06114.8	gi|408403444|ref|YP_006861427.1|	-	0.13	12.0	0.0	0.14	11.9	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF955)
HTH_45	PF14947.1	gi|408403445|ref|YP_006861428.1|	-	4e-22	77.8	1.3	4.8e-22	77.5	0.9	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF4364	PF14277.1	gi|408403445|ref|YP_006861428.1|	-	0.00021	20.9	0.4	0.00022	20.8	0.3	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4364)
HTH_24	PF13412.1	gi|408403445|ref|YP_006861428.1|	-	0.0023	17.2	0.0	0.0035	16.7	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
DUF2250	PF10007.4	gi|408403445|ref|YP_006861428.1|	-	0.059	13.2	0.0	0.076	12.9	0.0	1.3	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
Copper-bind	PF00127.15	gi|408403446|ref|YP_006861429.1|	-	1.8e-06	28.0	0.0	3.1e-06	27.3	0.0	1.3	1	0	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
Cupredoxin_1	PF13473.1	gi|408403446|ref|YP_006861429.1|	-	1.4e-05	24.8	0.0	2.6e-05	24.0	0.0	1.4	1	0	0	1	1	1	1	Cupredoxin-like	domain
TrmB	PF01978.14	gi|408403448|ref|YP_006861431.1|	-	0.0015	18.1	0.1	0.0028	17.3	0.1	1.6	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
FUR	PF01475.14	gi|408403448|ref|YP_006861431.1|	-	0.0019	18.1	0.0	0.077	12.9	0.0	2.3	1	1	1	2	2	2	1	Ferric	uptake	regulator	family
DUF742	PF05331.6	gi|408403448|ref|YP_006861431.1|	-	0.004	16.7	0.0	0.005	16.4	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF742)
HTH_IclR	PF09339.5	gi|408403448|ref|YP_006861431.1|	-	0.041	13.4	0.0	0.085	12.4	0.0	1.6	1	1	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_28	PF13518.1	gi|408403448|ref|YP_006861431.1|	-	0.055	13.4	0.0	0.099	12.6	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_20	PF12840.2	gi|408403448|ref|YP_006861431.1|	-	0.068	12.9	0.0	0.14	11.9	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_11	PF08279.7	gi|408403448|ref|YP_006861431.1|	-	0.12	12.0	0.2	0.88	9.2	0.0	2.4	1	1	2	3	3	3	0	HTH	domain
FlaF	PF07309.6	gi|408403450|ref|YP_006861433.1|	-	0.00027	20.7	0.9	0.76	9.6	0.1	3.0	2	1	0	2	2	2	2	Flagellar	protein	FlaF
CDC37_N	PF03234.9	gi|408403450|ref|YP_006861433.1|	-	3.1	8.1	11.8	0.5	10.6	1.3	3.4	2	2	1	3	3	3	0	Cdc37	N	terminal	kinase	binding
DUF3677	PF12432.3	gi|408403451|ref|YP_006861434.1|	-	0.016	15.5	0.8	0.47	10.9	0.1	2.8	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3677)
DUF1024	PF06260.7	gi|408403451|ref|YP_006861434.1|	-	3	8.0	7.9	0.24	11.5	0.2	3.0	3	2	0	3	3	3	0	Protein	of	unknown	function	(DUF1024)
PE	PF00934.15	gi|408403452|ref|YP_006861435.1|	-	0.012	15.6	7.3	7.3	6.7	0.2	3.3	3	0	0	3	3	3	0	PE	family
4HB_MCP_1	PF12729.2	gi|408403453|ref|YP_006861436.1|	-	0.38	10.0	2.0	0.45	9.8	0.1	1.8	1	1	1	2	2	2	0	Four	helix	bundle	sensory	module	for	signal	transduction
Response_reg	PF00072.19	gi|408403455|ref|YP_006861438.1|	-	1.5e-07	31.4	0.1	1.6e-07	31.3	0.0	1.0	1	0	0	1	1	1	1	Response	regulator	receiver	domain
MEDS	PF14417.1	gi|408403456|ref|YP_006861439.1|	-	5.1e-07	28.9	0.1	6.6e-07	28.5	0.1	1.1	1	0	0	1	1	1	1	MEDS:	MEthanogen/methylotroph,	DcmR	Sensory	domain
Response_reg	PF00072.19	gi|408403457|ref|YP_006861440.1|	-	2.4e-14	53.2	0.1	2.6e-14	53.1	0.1	1.1	1	0	0	1	1	1	1	Response	regulator	receiver	domain
PEGA	PF08308.6	gi|408403460|ref|YP_006861443.1|	-	0.1	12.3	0.0	0.29	10.9	0.0	1.7	2	0	0	2	2	2	0	PEGA	domain
HIPIP	PF01355.12	gi|408403461|ref|YP_006861444.1|	-	0.017	15.2	2.7	3.3	7.9	0.1	2.5	2	0	0	2	2	2	0	High	potential	iron-sulfur	protein
C1_1	PF00130.17	gi|408403461|ref|YP_006861444.1|	-	0.84	9.4	4.2	1.4	8.6	0.2	2.4	2	1	0	2	2	2	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
PBCV_basic_adap	PF08789.5	gi|408403461|ref|YP_006861444.1|	-	5.1	6.8	6.5	1.2	8.8	0.7	2.5	3	0	0	3	3	3	0	PBCV-specific	basic	adaptor	domain
DUF1628	PF07790.6	gi|408403462|ref|YP_006861445.1|	-	0.042	14.5	1.8	0.042	14.5	1.3	1.8	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1628)
HisKA_3	PF07730.8	gi|408403464|ref|YP_006861447.1|	-	0.00028	21.1	16.1	0.015	15.5	0.2	4.0	1	1	2	3	3	3	1	Histidine	kinase
Dicistro_VP4	PF11492.3	gi|408403464|ref|YP_006861447.1|	-	0.01	15.8	2.0	0.079	12.9	0.1	2.9	4	0	0	4	4	3	0	Cricket	paralysis	virus,	VP4
Syntaxin_2	PF14523.1	gi|408403464|ref|YP_006861447.1|	-	0.025	14.6	4.5	0.03	14.3	1.2	2.2	1	1	1	2	2	2	0	Syntaxin-like	protein
ApoO	PF09769.4	gi|408403464|ref|YP_006861447.1|	-	0.029	14.0	8.8	0.58	9.8	1.3	2.0	1	1	1	2	2	2	0	Apolipoprotein	O
4HB_MCP_1	PF12729.2	gi|408403464|ref|YP_006861447.1|	-	0.062	12.6	9.9	0.077	12.3	6.9	1.1	1	0	0	1	1	1	0	Four	helix	bundle	sensory	module	for	signal	transduction
DUF651	PF04895.7	gi|408403464|ref|YP_006861447.1|	-	0.073	12.7	7.2	0.2	11.2	0.9	2.6	1	1	1	2	2	2	0	Archaeal	protein	of	unknown	function	(DUF651)
PhageMin_Tail	PF10145.4	gi|408403464|ref|YP_006861447.1|	-	0.082	12.5	8.6	0.31	10.6	3.8	2.2	1	1	1	2	2	2	0	Phage-related	minor	tail	protein
Laminin_II	PF06009.7	gi|408403464|ref|YP_006861447.1|	-	0.085	12.6	12.2	0.1	12.3	1.1	2.8	1	1	1	2	2	2	0	Laminin	Domain	II
WXG100	PF06013.7	gi|408403464|ref|YP_006861447.1|	-	0.093	12.7	9.3	1	9.3	1.4	3.5	1	1	2	3	3	3	0	Proteins	of	100	residues	with	WXG
Rapamycin_bind	PF08771.6	gi|408403464|ref|YP_006861447.1|	-	0.093	12.8	0.9	0.8	9.8	0.0	2.2	1	1	1	2	2	2	0	Rapamycin	binding	domain
DUF2250	PF10007.4	gi|408403464|ref|YP_006861447.1|	-	0.11	12.3	2.0	7.9	6.4	0.0	2.9	1	1	3	4	4	4	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
DUF883	PF05957.8	gi|408403464|ref|YP_006861447.1|	-	0.24	11.8	19.7	2.2	8.7	6.2	3.0	1	1	2	3	3	3	0	Bacterial	protein	of	unknown	function	(DUF883)
Med11	PF10280.4	gi|408403464|ref|YP_006861447.1|	-	0.25	11.4	4.7	0.75	9.8	3.2	1.9	1	1	0	1	1	1	0	Mediator	complex	protein
PTPA	PF03095.10	gi|408403464|ref|YP_006861447.1|	-	0.27	10.3	0.8	0.31	10.1	0.6	1.1	1	0	0	1	1	1	0	Phosphotyrosyl	phosphate	activator	(PTPA)	protein
DUF241	PF03087.9	gi|408403464|ref|YP_006861447.1|	-	0.33	10.4	4.2	0.41	10.1	2.9	1.1	1	0	0	1	1	1	0	Arabidopsis	protein	of	unknown	function
YtxH	PF12732.2	gi|408403464|ref|YP_006861447.1|	-	0.44	10.9	16.9	1.6e+03	-0.5	11.7	3.0	1	1	0	1	1	1	0	YtxH-like	protein
Spectrin	PF00435.16	gi|408403464|ref|YP_006861447.1|	-	0.46	10.7	4.5	5.3	7.3	3.0	2.2	1	1	1	2	2	2	0	Spectrin	repeat
ApoLp-III	PF07464.6	gi|408403464|ref|YP_006861447.1|	-	0.55	10.2	14.0	1.4	8.9	9.5	1.8	1	1	0	1	1	1	0	Apolipophorin-III	precursor	(apoLp-III)
Fib_alpha	PF08702.5	gi|408403464|ref|YP_006861447.1|	-	0.58	10.2	7.6	2.8	8.0	0.4	2.4	1	1	1	2	2	2	0	Fibrinogen	alpha/beta	chain	family
Phasin_2	PF09361.5	gi|408403464|ref|YP_006861447.1|	-	0.78	9.8	9.0	0.63	10.1	1.2	2.6	1	1	0	2	2	2	0	Phasin	protein
Prominin	PF05478.6	gi|408403464|ref|YP_006861447.1|	-	1	6.8	6.0	9.5	3.6	3.7	1.9	1	1	0	1	1	1	0	Prominin
DUF1664	PF07889.7	gi|408403464|ref|YP_006861447.1|	-	1.4	8.7	6.1	0.94	9.2	0.7	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1664)
DUF1470	PF07336.6	gi|408403464|ref|YP_006861447.1|	-	1.5	9.1	11.8	2.1	8.6	1.9	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1470)
HisKA	PF00512.20	gi|408403464|ref|YP_006861447.1|	-	1.8	8.5	9.7	0.63	10.0	0.2	3.2	1	1	1	2	2	2	0	His	Kinase	A	(phospho-acceptor)	domain
MxiH	PF09392.5	gi|408403464|ref|YP_006861447.1|	-	2.8	8.5	10.6	1.1e+03	0.2	7.3	2.9	1	1	0	1	1	1	0	Type	III	secretion	needle	MxiH	like
Latarcin	PF10279.4	gi|408403464|ref|YP_006861447.1|	-	2.9	8.1	8.3	0.69	10.1	0.3	2.4	1	1	0	2	2	2	0	Latarcin	precursor
DUF2229	PF09989.4	gi|408403464|ref|YP_006861447.1|	-	4.2	6.7	13.1	3.8	6.8	0.7	2.0	1	1	1	2	2	2	0	CoA	enzyme	activase	uncharacterised	domain	(DUF2229)
DUF2203	PF09969.4	gi|408403464|ref|YP_006861447.1|	-	5.1	7.3	11.5	2.4	8.3	0.7	2.3	1	1	1	2	2	2	0	Uncharacterized	conserved	protein	(DUF2203)
ISG65-75	PF11727.3	gi|408403464|ref|YP_006861447.1|	-	5.4	5.9	15.7	5.6	5.9	9.8	1.7	1	1	1	2	2	2	0	Invariant	surface	glycoprotein
TMP_2	PF06791.8	gi|408403464|ref|YP_006861447.1|	-	9.4	5.7	13.9	0.86	9.1	1.5	2.0	1	1	1	2	2	2	0	Prophage	tail	length	tape	measure	protein
AAA_13	PF13166.1	gi|408403465|ref|YP_006861448.1|	-	0.00063	18.3	1.4	0.00069	18.2	1.0	1.0	1	0	0	1	1	1	1	AAA	domain
YtxH	PF12732.2	gi|408403465|ref|YP_006861448.1|	-	0.0012	19.1	10.1	1.3	9.4	0.1	3.3	3	1	0	3	3	3	2	YtxH-like	protein
CDC37_N	PF03234.9	gi|408403465|ref|YP_006861448.1|	-	0.0023	18.2	3.4	0.0027	18.0	2.0	1.3	1	1	0	1	1	1	1	Cdc37	N	terminal	kinase	binding
DUF948	PF06103.6	gi|408403465|ref|YP_006861448.1|	-	0.0081	15.9	7.5	0.73	9.7	0.3	3.3	2	2	1	3	3	3	1	Bacterial	protein	of	unknown	function	(DUF948)
Syntaxin-6_N	PF09177.6	gi|408403465|ref|YP_006861448.1|	-	0.009	16.3	5.2	0.092	13.1	0.2	2.8	1	1	1	2	2	2	1	Syntaxin	6,	N-terminal
BAR_3_WASP_bdg	PF10456.4	gi|408403465|ref|YP_006861448.1|	-	0.01	15.1	1.0	0.021	14.0	0.1	1.8	2	0	0	2	2	2	0	WASP-binding	domain	of	Sorting	nexin	protein
CAMP_factor	PF07373.6	gi|408403465|ref|YP_006861448.1|	-	0.013	15.0	0.7	0.047	13.1	0.5	1.9	1	1	0	1	1	1	0	CAMP	factor	(Cfa)
Syntaxin	PF00804.20	gi|408403465|ref|YP_006861448.1|	-	0.014	15.5	7.1	0.2	11.8	0.2	2.5	3	0	0	3	3	2	0	Syntaxin
Laminin_I	PF06008.9	gi|408403465|ref|YP_006861448.1|	-	0.022	14.0	3.9	0.12	11.6	0.4	2.7	1	1	2	3	3	3	0	Laminin	Domain	I
DUF2379	PF09543.5	gi|408403465|ref|YP_006861448.1|	-	0.03	14.2	0.1	0.08	12.8	0.1	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2379)
PK_C	PF02887.11	gi|408403465|ref|YP_006861448.1|	-	0.054	13.0	0.1	0.11	12.0	0.1	1.8	1	1	0	1	1	1	0	Pyruvate	kinase,	alpha/beta	domain
DUF883	PF05957.8	gi|408403465|ref|YP_006861448.1|	-	0.078	13.3	3.8	21	5.5	0.0	3.3	2	1	1	3	3	3	0	Bacterial	protein	of	unknown	function	(DUF883)
HisKA_3	PF07730.8	gi|408403465|ref|YP_006861448.1|	-	0.091	13.1	2.7	54	4.2	0.0	4.1	3	2	1	4	4	4	0	Histidine	kinase
DUF2408	PF10303.4	gi|408403465|ref|YP_006861448.1|	-	0.095	12.8	2.7	0.13	12.3	1.3	1.6	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2408)
DUF3829	PF12889.2	gi|408403465|ref|YP_006861448.1|	-	0.099	11.8	3.7	0.17	11.0	2.4	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3829)
GATase_2	PF00310.16	gi|408403465|ref|YP_006861448.1|	-	0.11	11.2	1.1	0.14	10.8	0.8	1.4	1	1	0	1	1	1	0	Glutamine	amidotransferases	class-II
SNARE	PF05739.14	gi|408403465|ref|YP_006861448.1|	-	0.12	12.1	6.4	1.1	8.9	0.4	3.1	3	0	0	3	3	3	0	SNARE	domain
DUF2203	PF09969.4	gi|408403465|ref|YP_006861448.1|	-	0.16	12.2	4.9	0.73	10.0	0.8	2.3	2	1	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2203)
DUF1098	PF06497.6	gi|408403465|ref|YP_006861448.1|	-	0.16	12.0	1.5	5.2	7.2	0.1	2.8	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF1098)
HHH_6	PF14579.1	gi|408403465|ref|YP_006861448.1|	-	0.16	12.0	0.7	0.82	9.7	0.1	2.3	2	1	0	2	2	2	0	Helix-hairpin-helix	motif
ZipA_C	PF04354.8	gi|408403465|ref|YP_006861448.1|	-	0.18	11.3	0.9	4.4	6.7	0.1	2.2	2	0	0	2	2	2	0	ZipA,	C-terminal	FtsZ-binding	domain
Ku_C	PF03730.9	gi|408403465|ref|YP_006861448.1|	-	0.19	12.2	3.6	1.3	9.6	0.2	2.6	2	1	0	2	2	2	0	Ku70/Ku80	C-terminal	arm
DUF2250	PF10007.4	gi|408403465|ref|YP_006861448.1|	-	0.26	11.2	2.7	0.5	10.3	0.3	2.3	2	1	0	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
APG17	PF04108.7	gi|408403465|ref|YP_006861448.1|	-	0.34	9.6	3.5	2.2	6.9	2.4	2.2	1	1	0	1	1	1	0	Autophagy	protein	Apg17
SAS4	PF15460.1	gi|408403465|ref|YP_006861448.1|	-	0.43	10.4	6.0	0.47	10.3	1.3	2.6	2	1	1	3	3	3	0	Something	about	silencing,	SAS,	complex	subunit	4
DUF2666	PF10869.3	gi|408403465|ref|YP_006861448.1|	-	0.64	10.0	7.0	0.9	9.5	0.3	2.5	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF2666)
THOC7	PF05615.8	gi|408403465|ref|YP_006861448.1|	-	8.7	6.6	8.7	5.2	7.3	1.9	2.3	2	1	0	2	2	2	0	Tho	complex	subunit	7
UPF0104	PF03706.8	gi|408403466|ref|YP_006861449.1|	-	0.00047	19.5	0.6	0.00056	19.2	0.4	1.0	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0104)
Herpes_glycop	PF01528.11	gi|408403466|ref|YP_006861449.1|	-	0.041	12.5	0.3	0.045	12.4	0.2	1.0	1	0	0	1	1	1	0	Herpesvirus	glycoprotein	M
ApoO	PF09769.4	gi|408403467|ref|YP_006861450.1|	-	0.0067	16.1	6.8	0.23	11.1	4.7	2.3	1	1	0	1	1	1	1	Apolipoprotein	O
HisKA_3	PF07730.8	gi|408403467|ref|YP_006861450.1|	-	0.037	14.3	17.3	0.042	14.2	0.1	4.1	1	1	2	3	3	3	0	Histidine	kinase
Prominin	PF05478.6	gi|408403467|ref|YP_006861450.1|	-	2.9	5.3	8.6	6.5	4.1	6.0	1.5	1	1	0	1	1	1	0	Prominin
Tape_meas_lam_C	PF09718.5	gi|408403467|ref|YP_006861450.1|	-	3.5	7.5	11.9	2.6	8.0	0.2	3.7	2	1	1	3	3	3	0	Lambda	phage	tail	tape-measure	protein	(Tape_meas_lam_C)
Response_reg	PF00072.19	gi|408403468|ref|YP_006861451.1|	-	5.5e-24	84.3	0.0	6.4e-24	84.1	0.0	1.0	1	0	0	1	1	1	1	Response	regulator	receiver	domain
GxGYxYP	PF14323.1	gi|408403468|ref|YP_006861451.1|	-	0.13	10.9	0.0	0.17	10.5	0.0	1.2	1	0	0	1	1	1	0	GxGYxY	sequence	motif	in	domain	of	unknown	function
COX2_TM	PF02790.10	gi|408403469|ref|YP_006861452.1|	-	0.056	13.3	0.6	0.074	13.0	0.4	1.3	1	0	0	1	1	1	0	Cytochrome	C	oxidase	subunit	II,	transmembrane	domain
HATPase_c	PF02518.21	gi|408403470|ref|YP_006861453.1|	-	9.7e-26	89.6	0.2	3e-25	88.0	0.2	1.9	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.20	gi|408403470|ref|YP_006861453.1|	-	4.6e-15	55.3	0.8	1.6e-14	53.6	0.5	2.1	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
Regulator_TrmB	PF11495.3	gi|408403470|ref|YP_006861453.1|	-	0.00016	20.7	6.5	0.0021	17.0	0.2	2.8	3	0	0	3	3	3	2	Archaeal	transcriptional	regulator	TrmB
PLDc_2	PF13091.1	gi|408403470|ref|YP_006861453.1|	-	0.00044	20.0	3.3	0.0094	15.7	0.1	3.3	3	0	0	3	3	3	1	PLD-like	domain
Gp-FAR-1	PF05823.7	gi|408403470|ref|YP_006861453.1|	-	0.0011	18.8	2.6	0.082	12.8	0.5	2.7	2	0	0	2	2	2	2	Nematode	fatty	acid	retinoid	binding	protein	(Gp-FAR-1)
HATPase_c_3	PF13589.1	gi|408403470|ref|YP_006861453.1|	-	0.0012	18.4	0.2	0.0034	17.0	0.1	1.7	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
MEDS	PF14417.1	gi|408403471|ref|YP_006861454.1|	-	1.4e-12	47.0	0.0	1.8e-12	46.7	0.0	1.1	1	0	0	1	1	1	1	MEDS:	MEthanogen/methylotroph,	DcmR	Sensory	domain
KaiC	PF06745.8	gi|408403471|ref|YP_006861454.1|	-	3.6e-06	26.2	0.0	5.8e-06	25.5	0.0	1.4	1	0	0	1	1	1	1	KaiC
PhoD	PF09423.5	gi|408403472|ref|YP_006861455.1|	-	2.4e-09	36.3	0.1	5.1e-07	28.6	0.0	2.9	2	1	0	2	2	2	2	PhoD-like	phosphatase
NADHdeh_related	PF10125.4	gi|408403475|ref|YP_006861458.1|	-	0.38	9.8	5.4	0.53	9.4	3.7	1.3	1	0	0	1	1	1	0	NADH	dehydrogenase	I,	subunit	N	related	protein
HTH_5	PF01022.15	gi|408403476|ref|YP_006861459.1|	-	5.2e-10	38.8	0.0	9.6e-10	37.9	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.2	gi|408403476|ref|YP_006861459.1|	-	9.8e-08	31.6	0.0	1.8e-07	30.8	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.1	gi|408403476|ref|YP_006861459.1|	-	1.8e-05	24.0	0.5	4.5e-05	22.7	0.1	1.8	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_45	PF14947.1	gi|408403476|ref|YP_006861459.1|	-	0.00011	21.9	0.3	0.00025	20.8	0.1	1.7	1	1	0	1	1	1	1	Winged	helix-turn-helix
TrmB	PF01978.14	gi|408403476|ref|YP_006861459.1|	-	0.00011	21.8	0.0	0.00019	21.0	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_11	PF08279.7	gi|408403476|ref|YP_006861459.1|	-	0.005	16.4	0.0	0.0084	15.7	0.0	1.4	1	0	0	1	1	1	1	HTH	domain
HTH_29	PF13551.1	gi|408403476|ref|YP_006861459.1|	-	0.0074	16.4	0.0	0.01	15.9	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn	helix
B-block_TFIIIC	PF04182.7	gi|408403476|ref|YP_006861459.1|	-	0.01	15.6	0.0	0.021	14.6	0.0	1.5	1	0	0	1	1	1	1	B-block	binding	subunit	of	TFIIIC
HTH_34	PF13601.1	gi|408403476|ref|YP_006861459.1|	-	0.013	15.5	0.0	0.28	11.2	0.0	2.2	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
Phage_rep_org_N	PF09681.5	gi|408403476|ref|YP_006861459.1|	-	0.014	14.9	0.0	0.027	14.0	0.0	1.4	2	0	0	2	2	2	0	N-terminal	phage	replisome	organiser	(Phage_rep_org_N)
MarR_2	PF12802.2	gi|408403476|ref|YP_006861459.1|	-	0.047	13.3	0.0	0.071	12.7	0.0	1.3	1	0	0	1	1	1	0	MarR	family
Nup35_RRM	PF05172.8	gi|408403476|ref|YP_006861459.1|	-	0.079	12.7	0.0	0.13	12.0	0.0	1.3	1	0	0	1	1	1	0	Nup53/35/40-type	RNA	recognition	motif
LexA_DNA_bind	PF01726.11	gi|408403476|ref|YP_006861459.1|	-	0.084	12.4	0.0	0.14	11.7	0.0	1.4	1	0	0	1	1	1	0	LexA	DNA	binding	domain
Fe_dep_repress	PF01325.14	gi|408403476|ref|YP_006861459.1|	-	0.11	12.3	0.0	0.69	9.8	0.0	2.0	1	1	1	2	2	2	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
PAC2	PF09754.4	gi|408403482|ref|YP_006861465.1|	-	8.8e-28	97.6	0.0	1.3e-27	97.0	0.0	1.2	1	0	0	1	1	1	1	PAC2	family
HATPase_c	PF02518.21	gi|408403484|ref|YP_006861467.1|	-	1.5e-25	89.0	0.1	5.1e-25	87.3	0.1	2.0	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.20	gi|408403484|ref|YP_006861467.1|	-	1.2e-13	50.8	0.7	1.2e-13	50.8	0.5	2.7	3	0	0	3	3	3	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_5	PF14501.1	gi|408403484|ref|YP_006861467.1|	-	3.6e-05	23.4	0.0	0.00011	21.8	0.0	1.9	1	0	0	1	1	1	1	GHKL	domain
PTS_IIA	PF02255.11	gi|408403484|ref|YP_006861467.1|	-	0.00091	19.0	0.7	0.0028	17.4	0.5	1.8	1	0	0	1	1	1	1	PTS	system,	Lactose/Cellobiose	specific	IIA	subunit
HATPase_c_3	PF13589.1	gi|408403484|ref|YP_006861467.1|	-	0.0013	18.4	0.1	0.0039	16.8	0.0	1.9	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
CHASE	PF03924.8	gi|408403484|ref|YP_006861467.1|	-	0.043	13.0	0.0	0.084	12.0	0.0	1.5	1	0	0	1	1	1	0	CHASE	domain
TMEM51	PF15345.1	gi|408403484|ref|YP_006861467.1|	-	0.045	13.4	0.8	0.087	12.5	0.6	1.4	1	0	0	1	1	1	0	Transmembrane	protein	51
OrfB_IS605	PF01385.14	gi|408403485|ref|YP_006861468.1|	-	3e-24	85.6	4.9	5.6e-24	84.7	3.4	1.4	1	1	0	1	1	1	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.6	gi|408403485|ref|YP_006861468.1|	-	5.4e-22	77.2	0.3	1.3e-21	75.9	0.2	1.7	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
HTH_OrfB_IS605	PF12323.3	gi|408403485|ref|YP_006861468.1|	-	7.3e-16	57.2	1.7	2.1e-15	55.7	1.2	1.9	1	0	0	1	1	1	1	Helix-turn-helix	domain
HypA	PF01155.14	gi|408403485|ref|YP_006861468.1|	-	0.0099	15.5	0.0	0.025	14.2	0.0	1.7	1	0	0	1	1	1	1	Hydrogenase	expression/synthesis	hypA	family
FYVE	PF01363.16	gi|408403485|ref|YP_006861468.1|	-	0.014	15.2	0.0	0.04	13.8	0.0	1.8	1	0	0	1	1	1	0	FYVE	zinc	finger
DZR	PF12773.2	gi|408403485|ref|YP_006861468.1|	-	0.019	14.7	0.4	0.045	13.5	0.3	1.5	1	0	0	1	1	1	0	Double	zinc	ribbon
zf-ribbon_3	PF13248.1	gi|408403485|ref|YP_006861468.1|	-	0.072	12.3	2.0	1	8.6	1.6	2.3	1	1	1	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_2	PF13240.1	gi|408403485|ref|YP_006861468.1|	-	0.11	12.0	0.8	0.62	9.6	0.7	2.1	1	1	1	2	2	2	0	zinc-ribbon	domain
HATPase_c	PF02518.21	gi|408403486|ref|YP_006861469.1|	-	4.8e-28	97.0	0.0	8.7e-28	96.2	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.20	gi|408403486|ref|YP_006861469.1|	-	3.5e-12	46.1	0.1	1.3e-11	44.2	0.1	2.1	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_5	PF14501.1	gi|408403486|ref|YP_006861469.1|	-	0.0001	21.9	0.0	0.0006	19.4	0.0	2.2	2	0	0	2	2	2	1	GHKL	domain
HATPase_c_3	PF13589.1	gi|408403486|ref|YP_006861469.1|	-	0.00026	20.6	0.0	0.00068	19.2	0.0	1.7	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.1	gi|408403486|ref|YP_006861469.1|	-	0.00085	19.1	0.0	0.0023	17.7	0.0	1.7	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
SIMPL	PF04402.9	gi|408403486|ref|YP_006861469.1|	-	0.023	14.5	0.9	0.023	14.5	0.6	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF541)
Lectin_N	PF03954.9	gi|408403486|ref|YP_006861469.1|	-	1.5	8.2	4.9	0.52	9.7	0.9	2.3	2	1	0	2	2	2	0	Hepatic	lectin,	N-terminal	domain
HemolysinCabind	PF00353.14	gi|408403487|ref|YP_006861470.1|	-	2.8e-10	39.5	86.2	0.0049	17.1	7.0	8.8	1	1	12	13	13	13	12	Hemolysin-type	calcium-binding	repeat	(2	copies)
HYR	PF02494.11	gi|408403487|ref|YP_006861470.1|	-	0.065	13.2	8.5	2.1	8.4	0.7	4.0	2	1	0	2	2	2	0	HYR	domain
Response_reg	PF00072.19	gi|408403488|ref|YP_006861471.1|	-	4.7e-21	74.8	0.1	1.1e-20	73.7	0.1	1.6	1	0	0	1	1	1	1	Response	regulator	receiver	domain
PrpR_N	PF06506.6	gi|408403488|ref|YP_006861471.1|	-	0.096	12.0	0.0	2	7.7	0.0	2.3	1	1	1	2	2	2	0	Propionate	catabolism	activator
Macoilin	PF09726.4	gi|408403489|ref|YP_006861472.1|	-	1.3	7.1	20.2	1.8	6.7	14.0	1.1	1	0	0	1	1	1	0	Transmembrane	protein
V4R	PF02830.13	gi|408403490|ref|YP_006861473.1|	-	1.2e-09	37.8	0.0	2.7e-09	36.7	0.0	1.6	2	0	0	2	2	1	1	V4R	domain
HTH_24	PF13412.1	gi|408403490|ref|YP_006861473.1|	-	1.7e-05	24.0	0.0	3.7e-05	23.0	0.0	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.2	gi|408403490|ref|YP_006861473.1|	-	0.004	16.9	0.0	0.0063	16.2	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.15	gi|408403490|ref|YP_006861473.1|	-	0.0044	16.6	0.0	0.0071	15.9	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_38	PF13936.1	gi|408403490|ref|YP_006861473.1|	-	0.012	15.1	0.3	0.03	13.8	0.1	1.7	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_34	PF13601.1	gi|408403490|ref|YP_006861473.1|	-	0.014	15.4	0.0	0.024	14.6	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_CodY	PF08222.6	gi|408403490|ref|YP_006861473.1|	-	0.027	13.8	0.2	0.063	12.6	0.1	1.6	1	0	0	1	1	1	0	CodY	helix-turn-helix	domain
Cro	PF09048.5	gi|408403490|ref|YP_006861473.1|	-	0.043	13.4	0.1	0.13	11.8	0.0	1.8	2	0	0	2	2	2	0	Cro
HTH_11	PF08279.7	gi|408403490|ref|YP_006861473.1|	-	0.051	13.2	0.0	0.12	11.9	0.0	1.6	1	0	0	1	1	1	0	HTH	domain
Rrf2	PF02082.15	gi|408403490|ref|YP_006861473.1|	-	0.052	13.6	0.1	0.1	12.7	0.1	1.5	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_IclR	PF09339.5	gi|408403490|ref|YP_006861473.1|	-	0.057	13.0	0.0	0.18	11.3	0.0	1.7	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
HTH_29	PF13551.1	gi|408403490|ref|YP_006861473.1|	-	0.062	13.4	0.1	0.18	11.9	0.0	1.8	2	0	0	2	2	2	0	Winged	helix-turn	helix
HTH_23	PF13384.1	gi|408403490|ref|YP_006861473.1|	-	0.067	12.8	0.0	0.15	11.7	0.0	1.5	1	0	0	1	1	1	0	Homeodomain-like	domain
KorB	PF08535.5	gi|408403490|ref|YP_006861473.1|	-	0.1	12.7	0.0	0.93	9.6	0.0	2.3	2	0	0	2	2	2	0	KorB	domain
DDE_Tnp_1	PF01609.16	gi|408403492|ref|YP_006861475.1|	-	0.0006	19.4	0.1	0.00063	19.3	0.1	1.0	1	0	0	1	1	1	1	Transposase	DDE	domain
Methyltrn_RNA_4	PF09936.4	gi|408403492|ref|YP_006861475.1|	-	0.034	13.6	0.1	0.04	13.4	0.1	1.1	1	0	0	1	1	1	0	SAM-dependent	RNA	methyltransferase
OrfB_IS605	PF01385.14	gi|408403497|ref|YP_006861480.1|	-	1.6e-25	89.8	5.6	2.7e-25	89.1	3.9	1.4	1	0	0	1	1	1	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.6	gi|408403497|ref|YP_006861480.1|	-	4.7e-21	74.2	0.9	1e-20	73.1	0.6	1.6	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
EH_Signature	PF15611.1	gi|408403497|ref|YP_006861480.1|	-	0.011	14.7	2.3	0.018	14.1	1.6	1.3	1	0	0	1	1	1	0	EH_Signature	domain
TF_Zn_Ribbon	PF08271.7	gi|408403497|ref|YP_006861480.1|	-	0.041	13.2	0.0	0.12	11.6	0.0	1.7	1	0	0	1	1	1	0	TFIIB	zinc-binding
PALP	PF00291.20	gi|408403498|ref|YP_006861481.1|	-	0.0017	17.6	0.1	0.0018	17.6	0.1	1.1	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
Cu_amine_oxidN1	PF07833.6	gi|408403499|ref|YP_006861482.1|	-	0.0091	16.3	6.4	9.2	6.6	0.1	4.3	2	1	2	4	4	4	4	Copper	amine	oxidase	N-terminal	domain
DUF3188	PF11384.3	gi|408403500|ref|YP_006861483.1|	-	0.015	14.8	0.9	0.023	14.2	0.6	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3188)
OrfB_IS605	PF01385.14	gi|408403502|ref|YP_006861485.1|	-	7.2e-23	81.1	4.9	1.2e-22	80.4	3.4	1.3	1	0	0	1	1	1	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.6	gi|408403502|ref|YP_006861485.1|	-	1.1e-19	69.8	0.2	2.4e-19	68.7	0.2	1.6	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
TF_Zn_Ribbon	PF08271.7	gi|408403502|ref|YP_006861485.1|	-	0.0021	17.3	0.1	0.12	11.6	0.0	2.5	2	0	0	2	2	2	1	TFIIB	zinc-binding
HypA	PF01155.14	gi|408403502|ref|YP_006861485.1|	-	0.012	15.2	0.1	0.031	13.9	0.0	1.6	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
DZR	PF12773.2	gi|408403502|ref|YP_006861485.1|	-	0.014	15.2	0.2	0.035	13.9	0.2	1.7	1	0	0	1	1	1	0	Double	zinc	ribbon
zf-ribbon_3	PF13248.1	gi|408403502|ref|YP_006861485.1|	-	0.032	13.4	2.3	0.31	10.3	1.8	2.3	1	1	2	3	3	3	0	zinc-ribbon	domain
FYVE	PF01363.16	gi|408403502|ref|YP_006861485.1|	-	0.064	13.1	0.2	0.19	11.6	0.0	1.9	2	0	0	2	2	2	0	FYVE	zinc	finger
Ribosomal_L37e	PF01907.14	gi|408403502|ref|YP_006861485.1|	-	0.078	12.7	1.4	0.22	11.3	0.2	2.3	2	0	0	2	2	2	0	Ribosomal	protein	L37e
zinc_ribbon_2	PF13240.1	gi|408403502|ref|YP_006861485.1|	-	0.21	11.1	1.8	3.9	7.0	1.5	2.5	1	1	2	3	3	3	0	zinc-ribbon	domain
zf-Mss51	PF13824.1	gi|408403502|ref|YP_006861485.1|	-	0.42	10.5	3.5	0.62	9.9	0.1	2.9	2	1	1	3	3	3	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
EH_Signature	PF15611.1	gi|408403503|ref|YP_006861486.1|	-	0.061	12.3	0.0	0.067	12.2	0.0	1.1	1	0	0	1	1	1	0	EH_Signature	domain
Enkurin	PF13864.1	gi|408403503|ref|YP_006861486.1|	-	1.2	9.4	5.8	1.9	8.7	0.2	2.8	2	1	1	3	3	3	0	Calmodulin-binding
Response_reg	PF00072.19	gi|408403504|ref|YP_006861487.1|	-	7.4e-11	42.0	0.2	8.4e-11	41.8	0.2	1.0	1	0	0	1	1	1	1	Response	regulator	receiver	domain
APS_kinase	PF01583.15	gi|408403506|ref|YP_006861489.1|	-	2.3e-61	206.0	0.0	2.7e-61	205.8	0.0	1.0	1	0	0	1	1	1	1	Adenylylsulphate	kinase
KTI12	PF08433.5	gi|408403506|ref|YP_006861489.1|	-	1.1e-09	37.9	0.0	1.3e-09	37.6	0.0	1.1	1	0	0	1	1	1	1	Chromatin	associated	protein	KTI12
AAA_33	PF13671.1	gi|408403506|ref|YP_006861489.1|	-	2.3e-09	37.2	0.0	3.1e-09	36.8	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_18	PF13238.1	gi|408403506|ref|YP_006861489.1|	-	5.8e-08	33.0	0.0	9.6e-08	32.4	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_17	PF13207.1	gi|408403506|ref|YP_006861489.1|	-	1.7e-05	25.6	0.0	2.3e-05	25.2	0.0	1.4	1	1	0	1	1	1	1	AAA	domain
Zeta_toxin	PF06414.7	gi|408403506|ref|YP_006861489.1|	-	0.00011	21.4	0.0	0.00017	20.7	0.0	1.3	1	0	0	1	1	1	1	Zeta	toxin
ArgK	PF03308.11	gi|408403506|ref|YP_006861489.1|	-	0.00072	18.4	0.1	0.0017	17.1	0.0	1.5	1	1	1	2	2	2	1	ArgK	protein
NTPase_1	PF03266.10	gi|408403506|ref|YP_006861489.1|	-	0.001	18.8	0.0	0.0014	18.3	0.0	1.3	1	0	0	1	1	1	1	NTPase
ABC_tran	PF00005.22	gi|408403506|ref|YP_006861489.1|	-	0.0023	18.2	0.0	0.0024	18.1	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
CPT	PF07931.7	gi|408403506|ref|YP_006861489.1|	-	0.0026	17.4	0.1	0.032	13.8	0.1	2.3	1	1	0	1	1	1	1	Chloramphenicol	phosphotransferase-like	protein
SKI	PF01202.17	gi|408403506|ref|YP_006861489.1|	-	0.0042	16.9	0.0	0.0058	16.5	0.0	1.3	1	0	0	1	1	1	1	Shikimate	kinase
SRP54	PF00448.17	gi|408403506|ref|YP_006861489.1|	-	0.0052	16.2	0.0	0.0075	15.7	0.0	1.3	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
CbiA	PF01656.18	gi|408403506|ref|YP_006861489.1|	-	0.0074	15.7	0.0	0.0077	15.6	0.0	1.2	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
Thymidylate_kin	PF02223.12	gi|408403506|ref|YP_006861489.1|	-	0.015	14.7	0.1	0.032	13.5	0.1	1.5	1	1	0	1	1	1	0	Thymidylate	kinase
6PF2K	PF01591.13	gi|408403506|ref|YP_006861489.1|	-	0.017	14.2	0.0	0.023	13.7	0.0	1.2	1	0	0	1	1	1	0	6-phosphofructo-2-kinase
AAA_30	PF13604.1	gi|408403506|ref|YP_006861489.1|	-	0.033	13.7	0.0	0.053	13.1	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
cobW	PF02492.14	gi|408403506|ref|YP_006861489.1|	-	0.033	13.6	0.0	0.052	12.9	0.0	1.3	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_19	PF13245.1	gi|408403506|ref|YP_006861489.1|	-	0.045	13.4	0.3	0.1	12.3	0.2	1.8	1	1	0	1	1	1	0	Part	of	AAA	domain
AAA_22	PF13401.1	gi|408403506|ref|YP_006861489.1|	-	0.091	12.9	0.0	0.18	11.9	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
ATP_bind_1	PF03029.12	gi|408403506|ref|YP_006861489.1|	-	0.091	12.2	0.0	0.15	11.6	0.0	1.3	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
AAA	PF00004.24	gi|408403506|ref|YP_006861489.1|	-	0.1	12.8	0.0	0.12	12.5	0.0	1.4	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
Torsin	PF06309.6	gi|408403506|ref|YP_006861489.1|	-	0.13	12.1	0.0	0.22	11.4	0.0	1.4	1	0	0	1	1	1	0	Torsin
MobB	PF03205.9	gi|408403506|ref|YP_006861489.1|	-	0.14	11.8	0.0	0.21	11.3	0.0	1.4	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
DUF763	PF05559.6	gi|408403506|ref|YP_006861489.1|	-	0.15	10.9	0.0	0.23	10.3	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF763)
OrfB_IS605	PF01385.14	gi|408403507|ref|YP_006861490.1|	-	2.9e-36	124.9	4.3	4.7e-36	124.2	3.0	1.2	1	0	0	1	1	1	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.6	gi|408403507|ref|YP_006861490.1|	-	2.1e-22	78.5	0.2	4.2e-22	77.5	0.1	1.6	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
HTH_OrfB_IS605	PF12323.3	gi|408403507|ref|YP_006861490.1|	-	2.9e-14	52.0	0.0	9.2e-14	50.5	0.0	1.9	1	0	0	1	1	1	1	Helix-turn-helix	domain
Zn_Tnp_IS1595	PF12760.2	gi|408403507|ref|YP_006861490.1|	-	0.083	12.7	0.7	0.27	11.0	0.5	1.8	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
Y1_Tnp	PF01797.11	gi|408403508|ref|YP_006861491.1|	-	5.9e-13	48.7	0.0	6.4e-13	48.6	0.0	1.0	1	0	0	1	1	1	1	Transposase	IS200	like
HATPase_c	PF02518.21	gi|408403509|ref|YP_006861492.1|	-	2.7e-26	91.4	0.1	7.5e-26	90.0	0.0	1.8	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.20	gi|408403509|ref|YP_006861492.1|	-	1.8e-10	40.6	0.7	5.9e-10	38.9	0.5	2.0	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
eRF1_1	PF03463.10	gi|408403509|ref|YP_006861492.1|	-	0.00049	19.6	0.0	0.0011	18.4	0.0	1.5	1	0	0	1	1	1	1	eRF1	domain	1
HATPase_c_5	PF14501.1	gi|408403509|ref|YP_006861492.1|	-	0.005	16.5	0.0	0.012	15.2	0.0	1.6	1	0	0	1	1	1	1	GHKL	domain
HATPase_c_3	PF13589.1	gi|408403509|ref|YP_006861492.1|	-	0.0054	16.3	0.1	0.012	15.2	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
DUF1761	PF08570.5	gi|408403509|ref|YP_006861492.1|	-	0.03	14.3	0.0	0.93	9.5	0.0	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1761)
DUF1049	PF06305.6	gi|408403509|ref|YP_006861492.1|	-	0.03	13.8	0.9	2	7.9	0.1	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1049)
Cache_3	PF14827.1	gi|408403509|ref|YP_006861492.1|	-	0.05	13.5	0.1	0.64	9.9	0.0	2.5	2	0	0	2	2	2	0	Sensory	domain	of	two-component	sensor	kinase
DUF2393	PF09624.5	gi|408403509|ref|YP_006861492.1|	-	0.055	12.9	0.4	0.42	10.1	0.1	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2393)
DUF2157	PF09925.4	gi|408403509|ref|YP_006861492.1|	-	0.06	12.9	0.1	0.74	9.4	0.0	2.2	2	0	0	2	2	2	0	Predicted	membrane	protein	(DUF2157)
DUF4307	PF14155.1	gi|408403509|ref|YP_006861492.1|	-	0.12	12.1	0.3	1.5	8.6	0.0	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4307)
GNVR	PF13807.1	gi|408403509|ref|YP_006861492.1|	-	0.19	11.4	0.1	0.19	11.4	0.0	1.9	2	0	0	2	2	1	0	G-rich	domain	on	putative	tyrosine	kinase
DUF2681	PF10883.3	gi|408403509|ref|YP_006861492.1|	-	1.2	9.3	4.6	4.7	7.4	0.4	2.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2681)
DUF1151	PF06625.6	gi|408403509|ref|YP_006861492.1|	-	5.4	6.7	8.8	2.3	7.9	0.6	3.1	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF1151)
DDE_Tnp_1	PF01609.16	gi|408403510|ref|YP_006861493.1|	-	0.00039	20.0	0.0	0.00093	18.7	0.0	1.6	1	1	0	1	1	1	1	Transposase	DDE	domain
DUF772	PF05598.6	gi|408403510|ref|YP_006861493.1|	-	0.0029	17.4	0.1	0.0059	16.4	0.1	1.5	1	0	0	1	1	1	1	Transposase	domain	(DUF772)
DDE_Tnp_1_assoc	PF13808.1	gi|408403510|ref|YP_006861493.1|	-	0.014	15.0	0.0	0.024	14.2	0.0	1.3	1	0	0	1	1	1	0	DDE_Tnp_1-associated
DDE_Tnp_1_5	PF13737.1	gi|408403510|ref|YP_006861493.1|	-	0.016	15.3	0.0	0.045	13.9	0.0	1.8	1	1	0	1	1	1	0	Transposase	DDE	domain
Polysacc_deac_1	PF01522.16	gi|408403511|ref|YP_006861494.1|	-	2.2e-07	30.5	0.0	4.1e-07	29.6	0.0	1.4	1	0	0	1	1	1	1	Polysaccharide	deacetylase
Laminin_G_3	PF13385.1	gi|408403512|ref|YP_006861495.1|	-	9.2e-11	42.2	0.0	1.3e-10	41.6	0.0	1.1	1	0	0	1	1	1	1	Concanavalin	A-like	lectin/glucanases	superfamily
rve	PF00665.21	gi|408403513|ref|YP_006861496.1|	-	3.1e-18	66.0	0.1	9e-18	64.5	0.0	1.7	2	0	0	2	2	2	1	Integrase	core	domain
rve_3	PF13683.1	gi|408403513|ref|YP_006861496.1|	-	1.6e-13	49.9	0.6	3.2e-13	48.9	0.4	1.6	1	0	0	1	1	1	1	Integrase	core	domain
SET_assoc	PF11767.3	gi|408403513|ref|YP_006861496.1|	-	0.08	12.2	0.6	13	5.2	0.0	2.3	2	0	0	2	2	2	0	Histone	lysine	methyltransferase	SET	associated
rve_2	PF13333.1	gi|408403513|ref|YP_006861496.1|	-	0.15	12.1	1.7	0.31	11.1	1.2	1.6	1	0	0	1	1	1	0	Integrase	core	domain
HTH_AraC	PF00165.18	gi|408403513|ref|YP_006861496.1|	-	0.78	9.6	3.9	0.99	9.3	0.2	2.8	3	0	0	3	3	3	0	Bacterial	regulatory	helix-turn-helix	proteins,	AraC	family
HTH_28	PF13518.1	gi|408403514|ref|YP_006861497.1|	-	8.3e-14	51.2	1.5	3.4e-11	42.9	0.1	2.2	2	0	0	2	2	2	2	Helix-turn-helix	domain
HTH_29	PF13551.1	gi|408403514|ref|YP_006861497.1|	-	1.2e-13	51.2	0.3	1.4e-13	50.9	0.2	1.1	1	0	0	1	1	1	1	Winged	helix-turn	helix
LZ_Tnp_IS481	PF13011.1	gi|408403514|ref|YP_006861497.1|	-	6.5e-12	45.6	0.1	2.5e-11	43.7	0.0	1.8	2	0	0	2	2	2	1	leucine-zipper	of	insertion	element	IS481
HTH_32	PF13565.1	gi|408403514|ref|YP_006861497.1|	-	1.4e-11	45.0	0.3	1.9e-11	44.5	0.2	1.2	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_23	PF13384.1	gi|408403514|ref|YP_006861497.1|	-	2.8e-09	36.3	0.8	2.5e-06	26.9	0.1	2.3	2	0	0	2	2	2	2	Homeodomain-like	domain
HTH_21	PF13276.1	gi|408403514|ref|YP_006861497.1|	-	0.0027	17.6	0.1	0.048	13.6	0.0	2.1	2	0	0	2	2	2	1	HTH-like	domain
HTH_Tnp_IS630	PF01710.11	gi|408403514|ref|YP_006861497.1|	-	0.016	14.8	0.1	0.078	12.6	0.0	1.9	2	0	0	2	2	2	0	Transposase
Terminase_5	PF06056.7	gi|408403514|ref|YP_006861497.1|	-	0.032	13.7	0.1	0.075	12.5	0.0	1.6	2	0	0	2	2	2	0	Putative	ATPase	subunit	of	terminase	(gpP-like)
FUR	PF01475.14	gi|408403514|ref|YP_006861497.1|	-	0.073	12.9	0.2	0.12	12.3	0.0	1.4	2	0	0	2	2	2	0	Ferric	uptake	regulator	family
HTH_36	PF13730.1	gi|408403514|ref|YP_006861497.1|	-	0.075	13.1	1.0	2.9	8.0	0.1	2.3	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_Tnp_1	PF01527.15	gi|408403514|ref|YP_006861497.1|	-	0.095	12.6	0.0	0.14	12.0	0.0	1.4	1	0	0	1	1	1	0	Transposase
HTH_7	PF02796.10	gi|408403514|ref|YP_006861497.1|	-	0.17	11.7	1.4	11	5.9	0.1	2.3	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	resolvase
HTH_17	PF12728.2	gi|408403514|ref|YP_006861497.1|	-	0.18	12.1	1.1	1.9	8.7	0.1	2.2	2	0	0	2	2	2	0	Helix-turn-helix	domain
Glycos_transf_2	PF00535.21	gi|408403515|ref|YP_006861498.1|	-	2.8e-25	88.9	0.7	3.7e-25	88.5	0.5	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.1	gi|408403515|ref|YP_006861498.1|	-	1.3e-08	34.8	0.0	1.8e-08	34.4	0.0	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_4	PF13704.1	gi|408403515|ref|YP_006861498.1|	-	0.0073	16.5	0.0	0.016	15.5	0.0	1.5	1	1	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_transf_21	PF13506.1	gi|408403515|ref|YP_006861498.1|	-	0.044	13.0	0.0	0.07	12.4	0.0	1.4	1	0	0	1	1	1	0	Glycosyl	transferase	family	21
DUF3040	PF11239.3	gi|408403515|ref|YP_006861498.1|	-	0.23	11.5	4.6	0.18	11.8	2.0	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3040)
Glycos_transf_1	PF00534.15	gi|408403516|ref|YP_006861499.1|	-	1.7e-26	92.6	0.0	7.3e-26	90.6	0.0	2.0	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.1	gi|408403516|ref|YP_006861499.1|	-	1.2e-20	74.0	0.0	3.1e-20	72.7	0.0	1.7	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.1	gi|408403516|ref|YP_006861499.1|	-	3.5e-08	33.7	0.0	6.1e-08	32.9	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	4-like	domain
Glyco_transf_4	PF13439.1	gi|408403516|ref|YP_006861499.1|	-	2.4e-07	30.6	0.0	4.4e-06	26.5	0.0	2.3	1	1	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_1_2	PF13524.1	gi|408403516|ref|YP_006861499.1|	-	1e-05	25.7	0.0	2.5e-05	24.4	0.0	1.7	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Epimerase_2	PF02350.14	gi|408403517|ref|YP_006861500.1|	-	1.7e-98	329.5	0.0	2e-98	329.3	0.0	1.0	1	0	0	1	1	1	1	UDP-N-acetylglucosamine	2-epimerase
DUF354	PF04007.7	gi|408403517|ref|YP_006861500.1|	-	2.2e-07	30.0	0.5	2.8e-07	29.7	0.4	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF354)
DUF1884	PF08967.5	gi|408403517|ref|YP_006861500.1|	-	0.033	14.2	0.2	0.3	11.1	0.0	2.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1884)
Transposase_20	PF02371.11	gi|408403519|ref|YP_006861502.1|	-	2.4e-25	88.4	0.0	4.5e-25	87.5	0.0	1.5	1	0	0	1	1	1	1	Transposase	IS116/IS110/IS902	family
DEDD_Tnp_IS110	PF01548.12	gi|408403519|ref|YP_006861502.1|	-	4.9e-16	58.6	0.1	9.7e-16	57.7	0.1	1.5	1	0	0	1	1	1	1	Transposase
DDE_Tnp_1_2	PF13586.1	gi|408403520|ref|YP_006861503.1|	-	8.9e-14	51.4	1.1	9.5e-14	51.3	0.8	1.0	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1	PF01609.16	gi|408403520|ref|YP_006861503.1|	-	0.013	15.0	4.9	0.014	14.9	3.4	1.1	1	0	0	1	1	1	0	Transposase	DDE	domain
DDE_Tnp_1_6	PF13751.1	gi|408403520|ref|YP_006861503.1|	-	0.05	13.6	0.7	0.058	13.4	0.5	1.1	1	0	0	1	1	1	0	Transposase	DDE	domain
DUF772	PF05598.6	gi|408403522|ref|YP_006861505.1|	-	0.0022	17.8	0.1	0.0045	16.8	0.0	1.6	2	0	0	2	2	2	1	Transposase	domain	(DUF772)
DDE_Tnp_1_5	PF13737.1	gi|408403522|ref|YP_006861505.1|	-	0.0096	16.0	0.1	0.075	13.1	0.0	2.5	1	1	2	3	3	3	1	Transposase	DDE	domain
Glycos_transf_1	PF00534.15	gi|408403525|ref|YP_006861508.1|	-	9.9e-22	77.1	0.0	1.6e-21	76.4	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.1	gi|408403525|ref|YP_006861508.1|	-	1.2e-20	74.0	0.0	2.2e-20	73.1	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.1	gi|408403525|ref|YP_006861508.1|	-	6.3e-07	29.5	0.0	1.1e-06	28.8	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.1	gi|408403525|ref|YP_006861508.1|	-	8.2e-06	25.6	0.0	5.2e-05	23.0	0.0	2.1	1	1	0	1	1	1	1	Glycosyltransferase	Family	4
Epimerase_2	PF02350.14	gi|408403525|ref|YP_006861508.1|	-	9.7e-06	24.5	0.0	1.5e-05	23.9	0.0	1.2	1	0	0	1	1	1	1	UDP-N-acetylglucosamine	2-epimerase
Glyco_trans_4_4	PF13579.1	gi|408403525|ref|YP_006861508.1|	-	0.00014	22.0	0.0	0.00022	21.4	0.0	1.5	1	1	0	1	1	1	1	Glycosyl	transferase	4-like	domain
DUF2602	PF10782.4	gi|408403525|ref|YP_006861508.1|	-	0.088	12.6	0.1	0.51	10.2	0.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2602)
Polysacc_synt_3	PF13440.1	gi|408403526|ref|YP_006861509.1|	-	7.5e-08	32.1	25.7	7.5e-08	32.1	17.8	2.1	1	1	1	2	2	2	2	Polysaccharide	biosynthesis	protein
Polysacc_synt	PF01943.12	gi|408403526|ref|YP_006861509.1|	-	9.7e-06	25.0	26.7	9.7e-06	25.0	18.5	3.0	1	1	1	2	2	2	1	Polysaccharide	biosynthesis	protein
Polysacc_synt_C	PF14667.1	gi|408403526|ref|YP_006861509.1|	-	0.0012	18.6	9.2	0.0012	18.6	6.4	4.4	2	1	2	4	4	4	2	Polysaccharide	biosynthesis	C-terminal	domain
DUF3159	PF11361.3	gi|408403527|ref|YP_006861510.1|	-	0.083	12.3	0.0	0.1	12.0	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3159)
DUF457	PF04307.9	gi|408403529|ref|YP_006861512.1|	-	3.5e-09	36.1	13.8	7.1e-09	35.1	9.6	1.6	1	1	0	1	1	1	1	Predicted	membrane-bound	metal-dependent	hydrolase	(DUF457)
FeoB_C	PF07664.7	gi|408403529|ref|YP_006861512.1|	-	0.17	11.3	2.3	3.1	7.2	0.0	3.1	2	0	0	2	2	2	0	Ferrous	iron	transport	protein	B	C	terminus
Polysacc_deac_1	PF01522.16	gi|408403532|ref|YP_006861515.1|	-	4.5e-05	23.0	0.0	7.4e-05	22.3	0.0	1.3	1	0	0	1	1	1	1	Polysaccharide	deacetylase
Antitoxin-MazE	PF04014.13	gi|408403533|ref|YP_006861516.1|	-	4.9e-08	32.5	0.3	6.8e-08	32.0	0.2	1.2	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE
PIN	PF01850.16	gi|408403534|ref|YP_006861517.1|	-	2.3e-06	27.9	0.1	3.6e-06	27.3	0.1	1.3	1	1	0	1	1	1	1	PIN	domain
OrfB_Zn_ribbon	PF07282.6	gi|408403535|ref|YP_006861518.1|	-	1.2e-17	63.3	0.4	1.7e-17	62.8	0.3	1.2	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
TF_Zn_Ribbon	PF08271.7	gi|408403535|ref|YP_006861518.1|	-	0.0052	16.0	2.7	0.061	12.6	1.8	2.3	1	1	1	2	2	2	1	TFIIB	zinc-binding
zf-TFIIB	PF13453.1	gi|408403535|ref|YP_006861518.1|	-	0.016	14.3	0.8	0.029	13.5	0.6	1.4	1	0	0	1	1	1	0	Transcription	factor	zinc-finger
NMD3	PF04981.8	gi|408403535|ref|YP_006861518.1|	-	0.028	13.5	0.2	0.032	13.3	0.1	1.2	1	0	0	1	1	1	0	NMD3	family
zf-ribbon_3	PF13248.1	gi|408403535|ref|YP_006861518.1|	-	0.076	12.2	0.4	5.8	6.2	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-CSL	PF05207.8	gi|408403535|ref|YP_006861518.1|	-	0.09	12.2	0.7	0.18	11.3	0.5	1.5	1	0	0	1	1	1	0	CSL	zinc	finger
zf-C2H2_3	PF13878.1	gi|408403535|ref|YP_006861518.1|	-	0.11	12.1	0.2	6.1	6.5	0.1	2.2	2	0	0	2	2	2	0	zinc-finger	of	acetyl-transferase	ESCO
Methyltransf_13	PF08421.6	gi|408403535|ref|YP_006861518.1|	-	0.21	11.0	1.5	0.3	10.5	0.0	1.9	1	1	1	2	2	2	0	Putative	zinc	binding	domain
Zn_Tnp_IS1595	PF12760.2	gi|408403535|ref|YP_006861518.1|	-	0.49	10.2	2.7	1.2	8.9	1.8	1.7	1	1	0	1	1	1	0	Transposase	zinc-ribbon	domain
zf-RanBP	PF00641.13	gi|408403535|ref|YP_006861518.1|	-	1.5	7.9	3.9	2.6	7.2	0.2	2.1	2	0	0	2	2	2	0	Zn-finger	in	Ran	binding	protein	and	others
OrfB_IS605	PF01385.14	gi|408403536|ref|YP_006861519.1|	-	2e-35	122.2	3.9	3e-35	121.6	2.7	1.2	1	0	0	1	1	1	1	Probable	transposase
HTH_OrfB_IS605	PF12323.3	gi|408403536|ref|YP_006861519.1|	-	1.4e-13	49.9	0.0	3.5e-13	48.6	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
P12	PF12669.2	gi|408403537|ref|YP_006861520.1|	-	3.7	7.8	6.6	31	4.8	0.0	2.4	2	0	0	2	2	2	0	Virus	attachment	protein	p12	family
HTH_29	PF13551.1	gi|408403539|ref|YP_006861522.1|	-	2.3e-13	50.2	0.7	3e-13	49.8	0.5	1.2	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_32	PF13565.1	gi|408403539|ref|YP_006861522.1|	-	3.3e-13	50.2	0.8	3.3e-13	50.2	0.5	2.0	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_33	PF13592.1	gi|408403539|ref|YP_006861522.1|	-	2e-11	43.2	1.5	3.8e-11	42.3	1.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_28	PF13518.1	gi|408403539|ref|YP_006861522.1|	-	3.5e-09	36.4	2.1	6.9e-08	32.3	0.1	2.3	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_23	PF13384.1	gi|408403539|ref|YP_006861522.1|	-	6.7e-09	35.1	2.8	3.3e-07	29.7	0.0	3.1	3	0	0	3	3	3	1	Homeodomain-like	domain
LZ_Tnp_IS481	PF13011.1	gi|408403539|ref|YP_006861522.1|	-	1.6e-07	31.5	0.6	3e-07	30.7	0.1	1.6	1	1	1	2	2	2	1	leucine-zipper	of	insertion	element	IS481
HTH_Tnp_Tc3_2	PF01498.13	gi|408403539|ref|YP_006861522.1|	-	0.019	15.0	0.3	0.037	14.0	0.2	1.5	1	0	0	1	1	1	0	Transposase
PIN	PF01850.16	gi|408403540|ref|YP_006861523.1|	-	1.1e-18	67.7	0.1	1.2e-18	67.5	0.1	1.0	1	0	0	1	1	1	1	PIN	domain
Antitoxin-MazE	PF04014.13	gi|408403541|ref|YP_006861524.1|	-	0.00019	21.0	0.1	0.00033	20.3	0.0	1.5	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE
ATP_bind_2	PF03668.10	gi|408403541|ref|YP_006861524.1|	-	0.025	13.6	0.3	0.025	13.6	0.2	1.0	1	0	0	1	1	1	0	P-loop	ATPase	protein	family
Salt_tol_Pase	PF09506.5	gi|408403541|ref|YP_006861524.1|	-	0.03	12.8	0.1	0.034	12.7	0.0	1.1	1	0	0	1	1	1	0	Glucosylglycerol-phosphate	phosphatase	(Salt_tol_Pase)
HTH_28	PF13518.1	gi|408403542|ref|YP_006861525.1|	-	3.4e-17	62.1	1.7	2.6e-14	52.8	0.2	2.2	2	0	0	2	2	2	2	Helix-turn-helix	domain
HTH_29	PF13551.1	gi|408403542|ref|YP_006861525.1|	-	1.1e-16	61.0	0.7	1.2e-16	60.8	0.5	1.1	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_23	PF13384.1	gi|408403542|ref|YP_006861525.1|	-	2.7e-12	45.9	1.8	1.7e-09	37.0	0.0	2.6	2	1	0	2	2	2	2	Homeodomain-like	domain
HTH_32	PF13565.1	gi|408403542|ref|YP_006861525.1|	-	3.5e-12	46.9	0.9	3.5e-12	46.9	0.6	1.7	1	1	1	2	2	2	1	Homeodomain-like	domain
LZ_Tnp_IS481	PF13011.1	gi|408403542|ref|YP_006861525.1|	-	2.8e-10	40.3	0.3	2.4e-09	37.3	0.0	2.0	1	1	0	2	2	2	1	leucine-zipper	of	insertion	element	IS481
HTH_Tnp_1	PF01527.15	gi|408403542|ref|YP_006861525.1|	-	4e-08	33.0	0.0	6.4e-08	32.4	0.0	1.3	1	0	0	1	1	1	1	Transposase
HTH_21	PF13276.1	gi|408403542|ref|YP_006861525.1|	-	0.00066	19.6	1.0	0.0031	17.4	0.2	2.2	2	0	0	2	2	2	1	HTH-like	domain
HTH_Tnp_IS630	PF01710.11	gi|408403542|ref|YP_006861525.1|	-	0.0007	19.2	1.0	0.0024	17.5	0.2	1.9	1	1	0	2	2	2	1	Transposase
HTH_36	PF13730.1	gi|408403542|ref|YP_006861525.1|	-	0.0012	18.9	0.9	0.16	12.0	0.1	2.2	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_7	PF02796.10	gi|408403542|ref|YP_006861525.1|	-	0.0056	16.5	3.6	0.21	11.4	0.1	2.6	3	0	0	3	3	3	1	Helix-turn-helix	domain	of	resolvase
Phage_AlpA	PF05930.7	gi|408403542|ref|YP_006861525.1|	-	0.0065	16.1	0.1	0.32	10.7	0.0	2.5	2	0	0	2	2	2	1	Prophage	CP4-57	regulatory	protein	(AlpA)
HTH_19	PF12844.2	gi|408403542|ref|YP_006861525.1|	-	0.0093	16.0	0.3	0.027	14.5	0.1	1.8	2	0	0	2	2	2	1	Helix-turn-helix	domain
Terminase_5	PF06056.7	gi|408403542|ref|YP_006861525.1|	-	0.012	15.1	0.2	0.031	13.8	0.0	1.7	2	0	0	2	2	2	0	Putative	ATPase	subunit	of	terminase	(gpP-like)
HTH_33	PF13592.1	gi|408403542|ref|YP_006861525.1|	-	0.017	14.6	0.1	0.042	13.4	0.1	1.7	1	0	0	1	1	1	0	Winged	helix-turn	helix
HTH_AraC	PF00165.18	gi|408403542|ref|YP_006861525.1|	-	0.024	14.4	0.8	0.14	12.0	0.1	2.3	2	1	1	3	3	3	0	Bacterial	regulatory	helix-turn-helix	proteins,	AraC	family
HTH_Tnp_Tc3_2	PF01498.13	gi|408403542|ref|YP_006861525.1|	-	0.024	14.6	0.1	0.061	13.3	0.0	1.7	1	0	0	1	1	1	0	Transposase
DUF1492	PF07374.6	gi|408403542|ref|YP_006861525.1|	-	0.032	14.3	0.2	0.066	13.3	0.0	1.7	2	0	0	2	2	1	0	Protein	of	unknown	function	(DUF1492)
HTH_11	PF08279.7	gi|408403542|ref|YP_006861525.1|	-	0.056	13.1	0.2	1.6	8.4	0.1	2.4	2	0	0	2	2	2	0	HTH	domain
HTH_Tnp_1_2	PF13022.1	gi|408403542|ref|YP_006861525.1|	-	0.064	13.0	0.0	0.085	12.6	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	of	insertion	element	transposase
HTH_17	PF12728.2	gi|408403542|ref|YP_006861525.1|	-	0.074	13.3	0.6	3.1	8.1	0.0	2.3	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_22	PF13309.1	gi|408403542|ref|YP_006861525.1|	-	0.099	12.4	0.2	4.1	7.2	0.0	2.4	2	0	0	2	2	2	0	HTH	domain
HTH_psq	PF05225.11	gi|408403542|ref|YP_006861525.1|	-	0.14	11.7	0.6	0.81	9.2	0.0	2.1	2	0	0	2	2	2	0	helix-turn-helix,	Psq	domain
Mga	PF05043.8	gi|408403542|ref|YP_006861525.1|	-	0.15	12.3	0.5	1.6	9.0	0.0	2.4	2	1	0	2	2	2	0	Mga	helix-turn-helix	domain
rve_2	PF13333.1	gi|408403545|ref|YP_006861528.1|	-	0.0042	17.1	0.0	0.0061	16.6	0.0	1.3	1	0	0	1	1	1	1	Integrase	core	domain
DEDD_Tnp_IS110	PF01548.12	gi|408403550|ref|YP_006861533.1|	-	0.0041	16.7	0.0	0.0048	16.5	0.0	1.0	1	0	0	1	1	1	1	Transposase
Transposase_20	PF02371.11	gi|408403551|ref|YP_006861534.1|	-	1.6e-17	63.3	0.0	3.4e-17	62.3	0.0	1.5	2	0	0	2	2	2	1	Transposase	IS116/IS110/IS902	family
Epimerase	PF01370.16	gi|408403553|ref|YP_006861536.1|	-	7e-43	146.7	0.0	9.3e-43	146.3	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
3Beta_HSD	PF01073.14	gi|408403553|ref|YP_006861536.1|	-	1.2e-19	70.0	0.2	6.7e-19	67.6	0.1	1.8	1	1	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Polysacc_synt_2	PF02719.10	gi|408403553|ref|YP_006861536.1|	-	2.3e-07	30.0	0.2	7.7e-07	28.2	0.2	1.7	2	0	0	2	2	2	1	Polysaccharide	biosynthesis	protein
NAD_binding_10	PF13460.1	gi|408403553|ref|YP_006861536.1|	-	9.5e-07	28.9	0.1	1.5e-06	28.3	0.1	1.3	1	0	0	1	1	1	1	NADH(P)-binding
NAD_binding_4	PF07993.7	gi|408403553|ref|YP_006861536.1|	-	8.2e-06	24.9	0.0	0.00029	19.8	0.0	2.1	1	1	0	1	1	1	1	Male	sterility	protein
adh_short	PF00106.20	gi|408403553|ref|YP_006861536.1|	-	1.9e-05	24.6	0.1	3.7e-05	23.7	0.1	1.4	1	1	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.5	gi|408403553|ref|YP_006861536.1|	-	0.047	13.3	0.0	0.069	12.8	0.0	1.3	1	0	0	1	1	1	0	KR	domain
NmrA	PF05368.8	gi|408403553|ref|YP_006861536.1|	-	0.051	12.8	0.9	0.087	12.0	0.4	1.6	2	0	0	2	2	2	0	NmrA-like	family
Glyco_transf_4	PF13439.1	gi|408403553|ref|YP_006861536.1|	-	0.11	12.1	0.0	0.18	11.5	0.0	1.2	1	0	0	1	1	1	0	Glycosyltransferase	Family	4
Pyr_redox	PF00070.22	gi|408403553|ref|YP_006861536.1|	-	0.11	12.8	0.0	0.3	11.5	0.0	1.7	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
DDE_Tnp_1	PF01609.16	gi|408403554|ref|YP_006861537.1|	-	0.00021	20.9	1.0	0.00038	20.0	0.7	1.4	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_2	PF13586.1	gi|408403554|ref|YP_006861537.1|	-	0.0095	16.0	0.6	0.02	15.0	0.4	1.5	1	0	0	1	1	1	1	Transposase	DDE	domain
Epimerase	PF01370.16	gi|408403557|ref|YP_006861540.1|	-	2.9e-60	203.6	0.0	3.5e-60	203.3	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
3Beta_HSD	PF01073.14	gi|408403557|ref|YP_006861540.1|	-	9.8e-31	106.4	0.0	1.3e-30	106.0	0.0	1.1	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Polysacc_synt_2	PF02719.10	gi|408403557|ref|YP_006861540.1|	-	9.8e-30	103.4	0.4	7.9e-29	100.4	0.3	1.9	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
RmlD_sub_bind	PF04321.12	gi|408403557|ref|YP_006861540.1|	-	1.2e-24	86.7	0.0	1.5e-24	86.3	0.0	1.2	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
NAD_binding_4	PF07993.7	gi|408403557|ref|YP_006861540.1|	-	2e-18	66.2	0.1	8.9e-13	47.7	0.0	2.2	1	1	1	2	2	2	2	Male	sterility	protein
adh_short	PF00106.20	gi|408403557|ref|YP_006861540.1|	-	7.6e-12	45.4	0.5	1.3e-11	44.6	0.4	1.4	1	0	0	1	1	1	1	short	chain	dehydrogenase
NAD_binding_10	PF13460.1	gi|408403557|ref|YP_006861540.1|	-	2.7e-11	43.7	0.0	4e-11	43.2	0.0	1.3	1	1	0	1	1	1	1	NADH(P)-binding
KR	PF08659.5	gi|408403557|ref|YP_006861540.1|	-	6e-06	26.0	0.5	1.4e-05	24.7	0.3	1.6	1	1	0	1	1	1	1	KR	domain
NmrA	PF05368.8	gi|408403557|ref|YP_006861540.1|	-	1.9e-05	24.0	0.5	3.1e-05	23.3	0.3	1.6	1	1	0	1	1	1	1	NmrA-like	family
Saccharop_dh	PF03435.13	gi|408403557|ref|YP_006861540.1|	-	0.0004	19.4	0.1	0.00066	18.7	0.0	1.3	1	0	0	1	1	1	1	Saccharopine	dehydrogenase
NAD_binding_2	PF03446.10	gi|408403557|ref|YP_006861540.1|	-	0.0039	17.0	0.1	0.0064	16.3	0.1	1.4	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
TrkA_N	PF02254.13	gi|408403557|ref|YP_006861540.1|	-	0.0073	16.3	0.1	0.028	14.4	0.1	1.9	2	0	0	2	2	2	1	TrkA-N	domain
CPSase_L_chain	PF00289.17	gi|408403557|ref|YP_006861540.1|	-	0.016	15.2	0.1	0.041	13.9	0.1	1.7	2	0	0	2	2	1	0	Carbamoyl-phosphate	synthase	L	chain,	N-terminal	domain
F420_oxidored	PF03807.12	gi|408403557|ref|YP_006861540.1|	-	0.058	13.8	0.0	0.14	12.6	0.0	1.7	1	0	0	1	1	1	0	NADP	oxidoreductase	coenzyme	F420-dependent
Pyr_redox_2	PF07992.9	gi|408403557|ref|YP_006861540.1|	-	0.085	12.7	0.1	0.41	10.4	0.0	2.0	1	1	1	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_3	PF03447.11	gi|408403557|ref|YP_006861540.1|	-	0.094	13.1	0.0	0.18	12.2	0.0	1.4	1	0	0	1	1	1	0	Homoserine	dehydrogenase,	NAD	binding	domain
DDE_Tnp_1_5	PF13737.1	gi|408403559|ref|YP_006861542.1|	-	1.6e-06	28.2	0.0	1.8e-06	28.0	0.0	1.1	1	0	0	1	1	1	1	Transposase	DDE	domain
Acyl-ACP_TE	PF01643.12	gi|408403559|ref|YP_006861542.1|	-	0.087	11.7	0.1	0.09	11.7	0.1	1.0	1	0	0	1	1	1	0	Acyl-ACP	thioesterase
DDE_Tnp_1	PF01609.16	gi|408403560|ref|YP_006861543.1|	-	4.2e-18	65.6	0.4	7.8e-18	64.8	0.2	1.3	1	1	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_2	PF13586.1	gi|408403560|ref|YP_006861543.1|	-	2.3e-05	24.5	0.8	0.00011	22.2	0.5	2.0	1	1	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_3	PF13612.1	gi|408403560|ref|YP_006861543.1|	-	2.6e-05	24.0	0.5	5.1e-05	23.0	0.3	1.4	1	1	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_7	PF13843.1	gi|408403560|ref|YP_006861543.1|	-	0.009	15.0	0.0	0.0096	15.0	0.0	1.1	1	0	0	1	1	1	1	Transposase	IS4
rve	PF00665.21	gi|408403560|ref|YP_006861543.1|	-	0.0092	16.0	0.0	0.025	14.6	0.0	1.7	2	0	0	2	2	2	1	Integrase	core	domain
DDE_Tnp_4	PF13359.1	gi|408403560|ref|YP_006861543.1|	-	0.11	12.1	0.9	0.16	11.5	0.6	1.3	1	1	0	1	1	1	0	DDE	superfamily	endonuclease
DDE_Tnp_IS66	PF03050.9	gi|408403561|ref|YP_006861544.1|	-	0.05	12.8	0.0	0.052	12.7	0.0	1.1	1	0	0	1	1	1	0	Transposase	IS66	family
bZIP_1	PF00170.16	gi|408403562|ref|YP_006861545.1|	-	0.0008	19.3	0.7	0.0008	19.3	0.5	1.8	2	0	0	2	2	2	1	bZIP	transcription	factor
DUF972	PF06156.8	gi|408403562|ref|YP_006861545.1|	-	0.013	15.8	0.5	0.024	14.9	0.3	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF972)
DUF904	PF06005.7	gi|408403562|ref|YP_006861545.1|	-	0.02	15.1	0.7	0.045	14.0	0.3	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF904)
HALZ	PF02183.13	gi|408403562|ref|YP_006861545.1|	-	0.028	14.1	1.1	0.068	12.8	0.7	1.6	1	0	0	1	1	1	0	Homeobox	associated	leucine	zipper
HAP1_N	PF04849.8	gi|408403562|ref|YP_006861545.1|	-	0.055	12.4	0.4	0.077	11.9	0.3	1.1	1	0	0	1	1	1	0	HAP1	N-terminal	conserved	region
DUF1959	PF09218.5	gi|408403564|ref|YP_006861547.1|	-	0.032	14.0	0.1	0.17	11.6	0.0	2.0	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF1959)
DUF3800	PF12686.2	gi|408403564|ref|YP_006861547.1|	-	0.056	13.0	0.1	0.066	12.8	0.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3800)
DUF1814	PF08843.6	gi|408403566|ref|YP_006861549.1|	-	0.00021	21.1	0.1	0.012	15.4	0.1	2.0	1	1	0	1	1	1	1	Nucleotidyl	transferase	of	unknown	function	(DUF1814)
CRC_subunit	PF08624.5	gi|408403567|ref|YP_006861550.1|	-	0.0061	16.4	1.0	0.24	11.2	0.0	2.5	3	0	0	3	3	3	2	Chromatin	remodelling	complex	Rsc7/Swp82	subunit
WYL	PF13280.1	gi|408403568|ref|YP_006861551.1|	-	0.0039	17.0	0.0	0.0048	16.7	0.0	1.1	1	0	0	1	1	1	1	WYL	domain
DDE_3	PF13358.1	gi|408403570|ref|YP_006861553.1|	-	8.5e-17	61.2	0.1	1e-16	61.0	0.0	1.1	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
DUF3114	PF11311.3	gi|408403570|ref|YP_006861553.1|	-	0.0088	15.4	0.1	0.012	15.0	0.1	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3114)
HTH_29	PF13551.1	gi|408403571|ref|YP_006861554.1|	-	2.3e-13	50.2	0.7	3e-13	49.8	0.5	1.2	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_32	PF13565.1	gi|408403571|ref|YP_006861554.1|	-	3.3e-13	50.2	0.8	3.3e-13	50.2	0.5	2.0	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_33	PF13592.1	gi|408403571|ref|YP_006861554.1|	-	2e-11	43.2	1.5	3.8e-11	42.3	1.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_28	PF13518.1	gi|408403571|ref|YP_006861554.1|	-	3.5e-09	36.4	2.1	6.9e-08	32.3	0.1	2.3	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_23	PF13384.1	gi|408403571|ref|YP_006861554.1|	-	6.7e-09	35.1	2.8	3.3e-07	29.7	0.0	3.1	3	0	0	3	3	3	1	Homeodomain-like	domain
LZ_Tnp_IS481	PF13011.1	gi|408403571|ref|YP_006861554.1|	-	1.6e-07	31.5	0.6	3e-07	30.7	0.1	1.6	1	1	1	2	2	2	1	leucine-zipper	of	insertion	element	IS481
HTH_Tnp_Tc3_2	PF01498.13	gi|408403571|ref|YP_006861554.1|	-	0.019	15.0	0.3	0.037	14.0	0.2	1.5	1	0	0	1	1	1	0	Transposase
OrfB_IS605	PF01385.14	gi|408403572|ref|YP_006861555.1|	-	8e-44	149.7	0.7	1.2e-43	149.0	0.5	1.3	1	0	0	1	1	1	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.6	gi|408403572|ref|YP_006861555.1|	-	0.00043	19.8	1.3	0.001	18.6	0.9	1.6	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
SAM_PNT	PF02198.11	gi|408403572|ref|YP_006861555.1|	-	0.081	12.6	0.1	0.16	11.7	0.1	1.4	1	0	0	1	1	1	0	Sterile	alpha	motif	(SAM)/Pointed	domain
HTH_23	PF13384.1	gi|408403573|ref|YP_006861556.1|	-	9.3e-06	25.1	0.4	7.6e-05	22.2	0.1	2.7	2	1	1	3	3	3	1	Homeodomain-like	domain
HTH_28	PF13518.1	gi|408403573|ref|YP_006861556.1|	-	9.5e-05	22.3	0.3	0.00047	20.0	0.1	2.4	2	0	0	2	2	2	1	Helix-turn-helix	domain
GerE	PF00196.14	gi|408403573|ref|YP_006861556.1|	-	0.0017	17.6	0.0	0.0074	15.5	0.0	2.1	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	luxR	family
Med4	PF10018.4	gi|408403573|ref|YP_006861556.1|	-	0.0063	15.9	3.1	0.0063	15.9	2.2	3.2	3	1	0	4	4	4	1	Vitamin-D-receptor	interacting	Mediator	subunit	4
LPP	PF04728.8	gi|408403573|ref|YP_006861556.1|	-	0.0083	15.9	2.3	1.3	8.8	0.1	3.2	2	1	0	2	2	2	1	Lipoprotein	leucine-zipper
Nab1	PF04902.7	gi|408403573|ref|YP_006861556.1|	-	0.026	14.0	0.5	0.055	12.9	0.4	1.5	1	0	0	1	1	1	0	Conserved	region	in	Nab1
GCR1_C	PF12550.3	gi|408403573|ref|YP_006861556.1|	-	0.032	14.1	3.4	0.15	11.9	0.1	3.2	3	0	0	3	3	3	0	Transcriptional	activator	of	glycolytic	enzymes
CENP-B_N	PF04218.8	gi|408403573|ref|YP_006861556.1|	-	0.032	13.6	0.0	0.13	11.6	0.0	2.1	1	0	0	1	1	1	0	CENP-B	N-terminal	DNA-binding	domain
HTH_29	PF13551.1	gi|408403573|ref|YP_006861556.1|	-	0.033	14.3	0.2	0.12	12.5	0.0	2.1	2	0	0	2	2	1	0	Winged	helix-turn	helix
FtsK_SpoIIIE	PF01580.13	gi|408403573|ref|YP_006861556.1|	-	0.12	11.8	0.7	14	5.0	0.0	2.8	2	1	1	3	3	3	0	FtsK/SpoIIIE	family
DUF2935	PF11155.3	gi|408403573|ref|YP_006861556.1|	-	0.16	12.0	10.7	0.21	11.6	0.2	4.1	3	2	0	3	3	3	0	Domain	of	unknown	function	(DUF2935)
HCMV_UL139	PF12507.3	gi|408403573|ref|YP_006861556.1|	-	0.26	11.4	3.7	0.13	12.4	0.3	2.1	2	0	0	2	2	2	0	Human	Cytomegalovirus	UL139	protein
Reo_sigmaC	PF04582.7	gi|408403573|ref|YP_006861556.1|	-	1.7	7.7	10.6	2	7.5	1.9	2.9	2	1	0	3	3	3	0	Reovirus	sigma	C	capsid	protein
CENP-R	PF06729.7	gi|408403573|ref|YP_006861556.1|	-	2	8.0	9.9	0.93	9.1	1.5	2.9	2	1	1	3	3	3	0	Kinetochore	component,	CENP-R
5_3_exonuc	PF01367.15	gi|408403573|ref|YP_006861556.1|	-	2.7	8.2	6.6	5.3	7.3	0.0	4.2	4	1	0	4	4	4	0	5'-3'	exonuclease,	C-terminal	SAM	fold
DUF4110	PF13422.1	gi|408403573|ref|YP_006861556.1|	-	6.4	6.6	7.8	23	4.8	0.1	3.7	3	1	1	4	4	4	0	Domain	of	unknown	function	(DUF4110)
DDE_Tnp_1	PF01609.16	gi|408403574|ref|YP_006861557.1|	-	0.017	14.6	0.0	0.017	14.6	0.0	1.0	1	0	0	1	1	1	0	Transposase	DDE	domain
DDE_Tnp_IS66	PF03050.9	gi|408403578|ref|YP_006861561.1|	-	8.2e-06	25.2	0.0	8.9e-06	25.1	0.0	1.0	1	0	0	1	1	1	1	Transposase	IS66	family
zf-IS66	PF13005.2	gi|408403579|ref|YP_006861562.1|	-	5.5e-06	26.2	0.3	1.4e-05	24.9	0.2	1.7	1	0	0	1	1	1	1	zinc-finger	binding	domain	of	transposase	IS66
bZIP_1	PF00170.16	gi|408403579|ref|YP_006861562.1|	-	0.00012	22.0	1.2	0.00012	22.0	0.8	2.1	2	1	0	2	2	2	1	bZIP	transcription	factor
DUF972	PF06156.8	gi|408403579|ref|YP_006861562.1|	-	0.0021	18.4	1.9	0.0029	17.9	1.3	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF972)
DUF904	PF06005.7	gi|408403579|ref|YP_006861562.1|	-	0.0028	17.9	0.7	0.0052	17.0	0.5	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF904)
TSC22	PF01166.13	gi|408403579|ref|YP_006861562.1|	-	0.0047	16.8	0.3	0.0075	16.2	0.2	1.3	1	0	0	1	1	1	1	TSC-22/dip/bun	family
DUF4164	PF13747.1	gi|408403579|ref|YP_006861562.1|	-	0.0065	16.5	0.4	0.011	15.8	0.3	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4164)
HALZ	PF02183.13	gi|408403579|ref|YP_006861562.1|	-	0.036	13.7	1.4	0.071	12.8	1.0	1.5	1	0	0	1	1	1	0	Homeobox	associated	leucine	zipper
DivIVA	PF05103.8	gi|408403579|ref|YP_006861562.1|	-	0.043	13.8	1.9	0.06	13.3	1.3	1.2	1	0	0	1	1	1	0	DivIVA	protein
HAP1_N	PF04849.8	gi|408403579|ref|YP_006861562.1|	-	0.044	12.7	0.7	0.061	12.2	0.5	1.1	1	0	0	1	1	1	0	HAP1	N-terminal	conserved	region
RasGAP_C	PF03836.10	gi|408403579|ref|YP_006861562.1|	-	0.046	13.4	3.6	0.075	12.7	2.5	1.3	1	0	0	1	1	1	0	RasGAP	C-terminus
Mto2_bdg	PF12808.2	gi|408403579|ref|YP_006861562.1|	-	0.052	13.6	2.0	0.074	13.1	0.5	2.0	2	0	0	2	2	2	0	Micro-tubular	organiser	Mto1	C-term	Mto2-binding	region
DivIC	PF04977.10	gi|408403579|ref|YP_006861562.1|	-	0.11	12.0	2.7	0.18	11.3	1.9	1.4	1	0	0	1	1	1	0	Septum	formation	initiator
IncA	PF04156.9	gi|408403579|ref|YP_006861562.1|	-	0.15	11.6	2.5	0.23	11.0	1.7	1.2	1	0	0	1	1	1	0	IncA	protein
EzrA	PF06160.7	gi|408403579|ref|YP_006861562.1|	-	0.18	9.9	1.9	0.21	9.6	1.3	1.1	1	0	0	1	1	1	0	Septation	ring	formation	regulator,	EzrA
Striatin	PF08232.7	gi|408403579|ref|YP_006861562.1|	-	0.25	11.6	3.3	0.33	11.2	2.3	1.2	1	0	0	1	1	1	0	Striatin	family
Ribosomal_L19e	PF01280.15	gi|408403579|ref|YP_006861562.1|	-	1.5	8.5	7.9	2.6	7.7	5.2	1.6	1	1	0	1	1	1	0	Ribosomal	protein	L19e
Antitoxin-MazE	PF04014.13	gi|408403580|ref|YP_006861563.1|	-	0.035	13.8	0.1	0.053	13.2	0.1	1.4	1	0	0	1	1	1	0	Antidote-toxin	recognition	MazE
PemK	PF02452.12	gi|408403581|ref|YP_006861564.1|	-	4.7e-18	65.3	0.1	5.2e-18	65.2	0.1	1.0	1	0	0	1	1	1	1	PemK-like	protein
DDE_Tnp_1	PF01609.16	gi|408403582|ref|YP_006861565.1|	-	6.8e-10	38.8	3.0	8.4e-10	38.5	2.1	1.1	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_7	PF13843.1	gi|408403582|ref|YP_006861565.1|	-	0.0026	16.8	0.9	0.0031	16.6	0.6	1.2	1	0	0	1	1	1	1	Transposase	IS4
Auxin_resp	PF06507.8	gi|408403582|ref|YP_006861565.1|	-	0.053	13.3	0.1	0.11	12.3	0.0	1.5	1	0	0	1	1	1	0	Auxin	response	factor
HATPase_c	PF02518.21	gi|408403585|ref|YP_006861568.1|	-	3.3e-26	91.1	0.0	8.5e-26	89.8	0.0	1.7	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.20	gi|408403585|ref|YP_006861568.1|	-	3.2e-11	43.0	0.3	9.8e-11	41.5	0.2	1.9	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_5	PF14501.1	gi|408403585|ref|YP_006861568.1|	-	3.1e-05	23.5	0.6	0.00014	21.5	0.1	2.3	2	0	0	2	2	2	1	GHKL	domain
HATPase_c_3	PF13589.1	gi|408403585|ref|YP_006861568.1|	-	0.0019	17.8	0.0	0.0058	16.2	0.0	1.8	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
Cache_1	PF02743.13	gi|408403585|ref|YP_006861568.1|	-	0.054	13.0	0.1	0.26	10.8	0.0	2.2	2	0	0	2	2	2	0	Cache	domain
Nucleic_acid_bd	PF13820.1	gi|408403586|ref|YP_006861569.1|	-	0.023	14.2	0.1	0.03	13.9	0.1	1.1	1	0	0	1	1	1	0	Putative	nucleic	acid-binding	region
OrfB_Zn_ribbon	PF07282.6	gi|408403587|ref|YP_006861570.1|	-	1.5e-17	62.9	0.2	1.8e-17	62.7	0.2	1.1	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
zinc_ribbon_2	PF13240.1	gi|408403587|ref|YP_006861570.1|	-	0.00044	19.6	0.4	0.58	9.7	0.0	2.1	2	0	0	2	2	2	2	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.7	gi|408403587|ref|YP_006861570.1|	-	0.0009	18.5	0.2	0.083	12.2	0.0	2.1	2	0	0	2	2	2	1	TFIIB	zinc-binding
DZR	PF12773.2	gi|408403587|ref|YP_006861570.1|	-	0.0018	18.0	0.3	0.0029	17.4	0.2	1.4	1	1	0	1	1	1	1	Double	zinc	ribbon
zf-ribbon_3	PF13248.1	gi|408403587|ref|YP_006861570.1|	-	0.002	17.2	2.4	0.021	14.0	1.9	2.0	1	1	2	3	3	3	3	zinc-ribbon	domain
Prok-RING_1	PF14446.1	gi|408403587|ref|YP_006861570.1|	-	0.0032	17.1	0.6	0.0045	16.6	0.4	1.2	1	0	0	1	1	1	1	Prokaryotic	RING	finger	family	1
Nudix_N_2	PF14803.1	gi|408403587|ref|YP_006861570.1|	-	0.005	16.5	4.2	0.17	11.6	2.9	2.2	1	1	0	1	1	1	1	Nudix	N-terminal
FYVE	PF01363.16	gi|408403587|ref|YP_006861570.1|	-	0.0076	16.1	0.1	0.0082	16.0	0.1	1.1	1	0	0	1	1	1	1	FYVE	zinc	finger
Ribosomal_L37e	PF01907.14	gi|408403587|ref|YP_006861570.1|	-	0.0095	15.7	0.4	0.015	15.1	0.3	1.3	1	0	0	1	1	1	1	Ribosomal	protein	L37e
zf-NADH-PPase	PF09297.6	gi|408403587|ref|YP_006861570.1|	-	0.0097	15.4	1.7	0.019	14.4	1.2	1.5	1	1	0	1	1	1	1	NADH	pyrophosphatase	zinc	ribbon	domain
Auto_anti-p27	PF06677.7	gi|408403587|ref|YP_006861570.1|	-	0.019	14.6	0.4	2.9	7.7	0.0	2.2	2	0	0	2	2	2	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
NinF	PF05810.7	gi|408403587|ref|YP_006861570.1|	-	0.02	14.7	0.1	0.024	14.4	0.1	1.3	1	0	0	1	1	1	0	NinF	protein
TFIIS_C	PF01096.13	gi|408403587|ref|YP_006861570.1|	-	0.031	13.8	1.5	3.8	7.2	0.1	2.1	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
Ribosomal_L37ae	PF01780.14	gi|408403587|ref|YP_006861570.1|	-	0.033	14.0	0.2	0.039	13.8	0.1	1.1	1	0	0	1	1	1	0	Ribosomal	L37ae	protein	family
DUF1451	PF07295.6	gi|408403587|ref|YP_006861570.1|	-	0.045	13.5	0.3	0.055	13.2	0.2	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1451)
zinc_ribbon_4	PF13717.1	gi|408403587|ref|YP_006861570.1|	-	0.049	13.3	1.0	1.7	8.4	0.0	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
HypA	PF01155.14	gi|408403587|ref|YP_006861570.1|	-	0.049	13.3	0.2	0.055	13.1	0.1	1.1	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
zinc_ribbon_5	PF13719.1	gi|408403587|ref|YP_006861570.1|	-	0.052	13.1	0.9	1.8	8.2	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
Viral_NABP	PF05515.6	gi|408403587|ref|YP_006861570.1|	-	0.064	13.5	0.1	0.073	13.3	0.1	1.2	1	1	0	1	1	1	0	Viral	nucleic	acid	binding
Ribosomal_S26e	PF01283.14	gi|408403587|ref|YP_006861570.1|	-	0.074	13.2	0.8	0.31	11.2	0.5	1.8	1	1	1	2	2	2	0	Ribosomal	protein	S26e
Rpr2	PF04032.11	gi|408403587|ref|YP_006861570.1|	-	0.11	12.3	1.2	5.8	6.8	0.1	2.0	1	1	1	2	2	2	0	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
A2L_zn_ribbon	PF08792.5	gi|408403587|ref|YP_006861570.1|	-	0.12	11.9	1.7	7.2	6.2	0.0	2.2	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
NMD3	PF04981.8	gi|408403587|ref|YP_006861570.1|	-	0.13	11.3	1.2	1.2	8.2	0.0	1.9	1	1	1	2	2	2	0	NMD3	family
RecR	PF02132.10	gi|408403587|ref|YP_006861570.1|	-	0.2	11.1	2.2	1.4	8.4	0.0	2.1	2	0	0	2	2	2	0	RecR	protein
zf-tcix	PF14952.1	gi|408403587|ref|YP_006861570.1|	-	0.25	10.7	2.5	0.7	9.2	0.0	2.1	2	0	0	2	2	2	0	Putative	treble-clef,	zinc-finger,	Zn-binding
zf-LITAF-like	PF10601.4	gi|408403587|ref|YP_006861570.1|	-	0.43	10.4	2.8	5.5	6.9	0.1	2.1	1	1	1	2	2	2	0	LITAF-like	zinc	ribbon	domain
zf-dskA_traR	PF01258.12	gi|408403587|ref|YP_006861570.1|	-	0.98	9.2	3.0	1	9.1	0.1	2.0	1	1	1	2	2	2	0	Prokaryotic	dksA/traR	C4-type	zinc	finger
zf-TFIIB	PF13453.1	gi|408403587|ref|YP_006861570.1|	-	1	8.5	4.9	4.9	6.4	3.4	1.9	1	1	0	1	1	1	0	Transcription	factor	zinc-finger
zf-HYPF	PF07503.7	gi|408403587|ref|YP_006861570.1|	-	1.4	8.4	5.0	3.3	7.2	0.3	2.3	2	1	0	2	2	2	0	HypF	finger
DNA_RNApol_7kD	PF03604.8	gi|408403587|ref|YP_006861570.1|	-	1.7	8.1	5.8	2.6	7.6	0.3	2.2	1	1	2	3	3	3	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
YwiC	PF14256.1	gi|408403588|ref|YP_006861571.1|	-	0.0088	16.1	0.1	0.0091	16.0	0.0	1.1	1	0	0	1	1	1	1	YwiC-like	protein
TauE	PF01925.14	gi|408403588|ref|YP_006861571.1|	-	0.028	13.8	7.6	0.034	13.5	5.3	1.1	1	0	0	1	1	1	0	Sulfite	exporter	TauE/SafE
zf-NADH-PPase	PF09297.6	gi|408403588|ref|YP_006861571.1|	-	0.037	13.5	3.7	0.062	12.8	0.5	2.1	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
Zn-ribbon_8	PF09723.5	gi|408403588|ref|YP_006861571.1|	-	0.05	13.5	5.1	0.72	9.8	0.7	2.2	1	1	1	2	2	2	0	Zinc	ribbon	domain
DZR	PF12773.2	gi|408403588|ref|YP_006861571.1|	-	0.053	13.3	1.3	0.083	12.7	0.9	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
zf-C3HC4_3	PF13920.1	gi|408403588|ref|YP_006861571.1|	-	0.071	12.7	0.9	0.1	12.3	0.6	1.2	1	0	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
DUF4321	PF14209.1	gi|408403588|ref|YP_006861571.1|	-	0.11	12.2	2.9	0.12	12.0	1.3	1.6	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4321)
zinc-ribbons_6	PF07191.7	gi|408403588|ref|YP_006861571.1|	-	0.11	12.2	0.1	0.17	11.7	0.0	1.3	1	0	0	1	1	1	0	zinc-ribbons
UbiA	PF01040.13	gi|408403588|ref|YP_006861571.1|	-	0.12	11.6	4.6	0.13	11.4	3.2	1.1	1	0	0	1	1	1	0	UbiA	prenyltransferase	family
DUF2878	PF11086.3	gi|408403588|ref|YP_006861571.1|	-	0.12	12.3	2.7	0.11	12.5	1.2	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2878)
TF_Zn_Ribbon	PF08271.7	gi|408403588|ref|YP_006861571.1|	-	0.21	10.9	2.1	3.3	7.1	0.1	2.1	2	0	0	2	2	2	0	TFIIB	zinc-binding
Peptidase_C74	PF12387.3	gi|408403588|ref|YP_006861571.1|	-	0.42	9.7	2.7	1.1	8.3	0.7	1.9	2	0	0	2	2	2	0	Pestivirus	NS2	peptidase
TFIIS_C	PF01096.13	gi|408403588|ref|YP_006861571.1|	-	0.75	9.4	8.4	1.3	8.6	0.1	3.1	3	0	0	3	3	3	0	Transcription	factor	S-II	(TFIIS)
zf-HIT	PF04438.11	gi|408403588|ref|YP_006861571.1|	-	0.85	9.3	3.7	1.8	8.2	2.6	1.6	1	1	0	1	1	1	0	HIT	zinc	finger
DUF4131	PF13567.1	gi|408403588|ref|YP_006861571.1|	-	1.4	8.3	3.5	1.7	8.0	2.4	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4131)
Ogr_Delta	PF04606.7	gi|408403588|ref|YP_006861571.1|	-	2.3	7.9	4.3	0.85	9.3	0.5	1.9	2	0	0	2	2	2	0	Ogr/Delta-like	zinc	finger
Zn_Tnp_IS1595	PF12760.2	gi|408403588|ref|YP_006861571.1|	-	2.7	7.8	5.4	3.2	7.6	0.5	2.1	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
DUF989	PF06181.6	gi|408403589|ref|YP_006861572.1|	-	0.051	12.6	0.0	0.051	12.6	0.0	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF989)
Reo_sigmaC	PF04582.7	gi|408403591|ref|YP_006861574.1|	-	0.086	12.0	0.7	0.096	11.8	0.5	1.1	1	0	0	1	1	1	0	Reovirus	sigma	C	capsid	protein
Fib_alpha	PF08702.5	gi|408403591|ref|YP_006861574.1|	-	0.086	12.9	10.3	0.076	13.1	5.9	1.7	1	1	1	2	2	2	0	Fibrinogen	alpha/beta	chain	family
Phage_Gp23	PF10669.4	gi|408403591|ref|YP_006861574.1|	-	0.1	12.7	0.6	0.1	12.7	0.4	2.4	1	1	0	2	2	2	0	Protein	gp23	(Bacteriophage	A118)
GP41	PF00517.12	gi|408403591|ref|YP_006861574.1|	-	0.11	11.9	6.6	0.044	13.3	2.6	1.7	1	1	1	2	2	2	0	Retroviral	envelope	protein
ADIP	PF11559.3	gi|408403591|ref|YP_006861574.1|	-	0.2	11.5	19.4	0.026	14.4	10.0	1.8	1	1	1	2	2	2	0	Afadin-	and	alpha	-actinin-Binding
Sigma70_ner	PF04546.8	gi|408403591|ref|YP_006861574.1|	-	0.3	10.6	13.1	0.4	10.2	9.1	1.2	1	0	0	1	1	1	0	Sigma-70,	non-essential	region
DUF2586	PF10758.4	gi|408403591|ref|YP_006861574.1|	-	0.56	9.2	6.5	0.66	8.9	4.5	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2586)
NPV_P10	PF05531.7	gi|408403591|ref|YP_006861574.1|	-	0.99	9.6	5.5	4.9	7.4	0.8	2.3	1	1	1	2	2	2	0	Nucleopolyhedrovirus	P10	protein
V_ATPase_I	PF01496.14	gi|408403591|ref|YP_006861574.1|	-	2.6	5.8	6.3	2.8	5.6	4.3	1.2	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
Sec20	PF03908.8	gi|408403591|ref|YP_006861574.1|	-	2.8	7.7	6.0	4.3	7.1	0.7	2.4	1	1	1	2	2	2	0	Sec20
Syntaxin-6_N	PF09177.6	gi|408403591|ref|YP_006861574.1|	-	3	8.3	7.8	6.9	7.1	5.4	1.9	1	1	0	1	1	1	0	Syntaxin	6,	N-terminal
Tweety	PF04906.8	gi|408403591|ref|YP_006861574.1|	-	4.4	5.5	7.0	1.2	7.4	0.7	1.8	1	1	1	2	2	2	0	Tweety
Cluap1	PF10234.4	gi|408403591|ref|YP_006861574.1|	-	4.9	6.2	15.4	5	6.2	9.9	1.5	1	1	0	1	1	1	0	Clusterin-associated	protein-1
Mucin	PF01456.12	gi|408403591|ref|YP_006861574.1|	-	7.2	6.3	8.5	4.3	7.1	4.5	1.6	1	1	1	2	2	2	0	Mucin-like	glycoprotein
Mt_ATP-synt_B	PF05405.9	gi|408403591|ref|YP_006861574.1|	-	7.2	6.0	12.6	9.8	5.6	7.0	1.9	1	1	1	2	2	2	0	Mitochondrial	ATP	synthase	B	chain	precursor	(ATP-synt_B)
DUF3138	PF11336.3	gi|408403591|ref|YP_006861574.1|	-	7.4	4.6	11.6	0.5	8.4	3.9	1.8	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3138)
Ferritin	PF00210.19	gi|408403593|ref|YP_006861576.1|	-	2.2e-19	69.6	0.0	2.7e-19	69.3	0.0	1.1	1	0	0	1	1	1	1	Ferritin-like	domain
Rubrerythrin	PF02915.12	gi|408403593|ref|YP_006861576.1|	-	0.018	15.3	0.0	0.03	14.6	0.0	1.4	1	1	0	1	1	1	0	Rubrerythrin
DUF1168	PF06658.7	gi|408403594|ref|YP_006861577.1|	-	0.019	14.5	2.5	0.028	13.9	1.7	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1168)
CXCL17	PF15211.1	gi|408403594|ref|YP_006861577.1|	-	2	8.8	6.7	3.9	7.9	4.7	1.5	1	1	0	1	1	1	0	VEGF	co-regulated	chemokine	1
VPS11_C	PF12451.3	gi|408403594|ref|YP_006861577.1|	-	3.4	7.5	6.0	15	5.5	0.9	2.7	2	1	1	3	3	3	0	Vacuolar	protein	sorting	protein	11	C	terminal
PBP_like_2	PF12849.2	gi|408403596|ref|YP_006861579.1|	-	9.2e-56	189.3	1.1	1.4e-55	188.7	0.8	1.3	1	0	0	1	1	1	1	PBP	superfamily	domain
BPD_transp_1	PF00528.17	gi|408403596|ref|YP_006861579.1|	-	8.1e-17	61.3	20.3	8.1e-17	61.3	14.1	3.0	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
SBP_bac_1	PF01547.20	gi|408403596|ref|YP_006861579.1|	-	5.2e-16	59.2	0.0	1.3e-15	58.0	0.0	1.7	2	1	0	2	2	2	1	Bacterial	extracellular	solute-binding	protein
PBP_like	PF12727.2	gi|408403596|ref|YP_006861579.1|	-	4.2e-07	29.1	0.0	1.9e-06	26.9	0.0	2.0	1	1	0	1	1	1	1	PBP	superfamily	domain
DUF859	PF05895.7	gi|408403596|ref|YP_006861579.1|	-	0.011	13.9	0.0	0.018	13.3	0.0	1.1	1	0	0	1	1	1	0	Siphovirus	protein	of	unknown	function	(DUF859)
BPD_transp_1	PF00528.17	gi|408403597|ref|YP_006861580.1|	-	1.2e-18	67.3	15.9	1.2e-18	67.3	11.0	2.0	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
DUF3333	PF11812.3	gi|408403597|ref|YP_006861580.1|	-	0.4	10.6	0.1	0.4	10.6	0.0	1.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3333)
Lamprin	PF06403.6	gi|408403597|ref|YP_006861580.1|	-	1.3	8.7	11.7	0.21	11.3	5.4	1.7	2	0	0	2	2	2	0	Lamprin
ABC_tran	PF00005.22	gi|408403598|ref|YP_006861581.1|	-	6.2e-33	114.0	0.0	8.9e-33	113.4	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|408403598|ref|YP_006861581.1|	-	3.9e-14	53.3	0.0	1.5e-07	31.6	0.0	2.2	1	1	1	2	2	2	2	AAA	domain
SMC_N	PF02463.14	gi|408403598|ref|YP_006861581.1|	-	8.8e-08	31.6	0.1	3.8e-06	26.2	0.0	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.1	gi|408403598|ref|YP_006861581.1|	-	4.5e-06	26.8	0.0	2.6e-05	24.3	0.0	2.0	1	1	0	1	1	1	1	AAA	domain
DUF258	PF03193.11	gi|408403598|ref|YP_006861581.1|	-	2.5e-05	23.5	0.0	4.2e-05	22.8	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
AAA_16	PF13191.1	gi|408403598|ref|YP_006861581.1|	-	6.7e-05	22.9	0.2	0.00033	20.6	0.1	2.0	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_23	PF13476.1	gi|408403598|ref|YP_006861581.1|	-	0.00011	22.5	0.3	0.00022	21.6	0.1	1.6	2	0	0	2	2	2	1	AAA	domain
AAA_15	PF13175.1	gi|408403598|ref|YP_006861581.1|	-	0.00031	19.9	0.1	0.036	13.1	0.0	2.1	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_29	PF13555.1	gi|408403598|ref|YP_006861581.1|	-	0.00087	18.7	0.0	0.0016	17.9	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
Rad17	PF03215.10	gi|408403598|ref|YP_006861581.1|	-	0.0013	17.4	0.0	0.0019	16.9	0.0	1.1	1	0	0	1	1	1	1	Rad17	cell	cycle	checkpoint	protein
ABC_ATPase	PF09818.4	gi|408403598|ref|YP_006861581.1|	-	0.0017	17.0	0.0	0.69	8.4	0.0	2.1	2	0	0	2	2	2	2	Predicted	ATPase	of	the	ABC	class
Adeno_IVa2	PF02456.10	gi|408403598|ref|YP_006861581.1|	-	0.0044	15.7	0.0	0.0076	14.9	0.0	1.3	1	0	0	1	1	1	1	Adenovirus	IVa2	protein
AAA_10	PF12846.2	gi|408403598|ref|YP_006861581.1|	-	0.0047	16.4	0.0	0.023	14.1	0.0	1.9	1	1	0	2	2	2	1	AAA-like	domain
AAA_28	PF13521.1	gi|408403598|ref|YP_006861581.1|	-	0.0059	16.5	0.0	0.013	15.4	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
Arch_ATPase	PF01637.13	gi|408403598|ref|YP_006861581.1|	-	0.0067	16.1	0.0	0.015	15.0	0.0	1.5	2	0	0	2	2	1	1	Archaeal	ATPase
AAA	PF00004.24	gi|408403598|ref|YP_006861581.1|	-	0.0067	16.6	0.0	0.13	12.4	0.0	2.3	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_17	PF13207.1	gi|408403598|ref|YP_006861581.1|	-	0.0078	17.0	0.2	0.018	15.8	0.1	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_11	PF13086.1	gi|408403598|ref|YP_006861581.1|	-	0.0091	15.5	0.0	0.012	15.2	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
AAA_18	PF13238.1	gi|408403598|ref|YP_006861581.1|	-	0.012	15.8	0.0	0.027	14.7	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
AAA_19	PF13245.1	gi|408403598|ref|YP_006861581.1|	-	0.019	14.7	0.0	0.083	12.6	0.0	2.0	2	0	0	2	2	2	0	Part	of	AAA	domain
ATP-synt_ab	PF00006.20	gi|408403598|ref|YP_006861581.1|	-	0.02	14.4	0.6	0.12	11.8	0.4	1.9	1	1	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
MobB	PF03205.9	gi|408403598|ref|YP_006861581.1|	-	0.021	14.5	0.0	0.062	13.0	0.0	1.8	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
PduV-EutP	PF10662.4	gi|408403598|ref|YP_006861581.1|	-	0.036	13.5	0.1	0.076	12.5	0.0	1.5	1	0	0	1	1	1	0	Ethanolamine	utilisation	-	propanediol	utilisation
AAA_14	PF13173.1	gi|408403598|ref|YP_006861581.1|	-	0.043	13.7	0.0	0.096	12.5	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
AAA_33	PF13671.1	gi|408403598|ref|YP_006861581.1|	-	0.043	13.6	0.0	0.16	11.8	0.0	1.7	1	1	1	2	2	2	0	AAA	domain
AAA_24	PF13479.1	gi|408403598|ref|YP_006861581.1|	-	0.064	12.8	0.0	0.13	11.8	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
PRK	PF00485.13	gi|408403598|ref|YP_006861581.1|	-	0.067	12.7	0.0	0.12	11.8	0.0	1.3	1	0	0	1	1	1	0	Phosphoribulokinase	/	Uridine	kinase	family
DUF2186	PF09952.4	gi|408403598|ref|YP_006861581.1|	-	0.079	13.2	0.0	0.14	12.4	0.0	1.4	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2186)
Viral_helicase1	PF01443.13	gi|408403598|ref|YP_006861581.1|	-	0.088	12.3	0.0	0.15	11.6	0.0	1.4	1	0	0	1	1	1	0	Viral	(Superfamily	1)	RNA	helicase
SbcCD_C	PF13558.1	gi|408403598|ref|YP_006861581.1|	-	0.098	12.5	0.1	0.86	9.5	0.1	2.1	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
NB-ARC	PF00931.17	gi|408403598|ref|YP_006861581.1|	-	0.14	11.0	0.0	0.25	10.1	0.0	1.4	1	0	0	1	1	1	0	NB-ARC	domain
NACHT	PF05729.7	gi|408403598|ref|YP_006861581.1|	-	0.14	11.8	0.0	0.33	10.5	0.0	1.6	1	0	0	1	1	1	0	NACHT	domain
OrfB_Zn_ribbon	PF07282.6	gi|408403599|ref|YP_006861582.1|	-	6.5e-23	80.1	0.7	1.3e-22	79.2	0.5	1.5	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.14	gi|408403599|ref|YP_006861582.1|	-	2.9e-16	59.5	1.5	3.7e-16	59.2	0.6	1.6	1	1	0	1	1	1	1	Probable	transposase
HypA	PF01155.14	gi|408403599|ref|YP_006861582.1|	-	0.0047	16.5	0.2	0.011	15.3	0.1	1.6	1	0	0	1	1	1	1	Hydrogenase	expression/synthesis	hypA	family
Zn_Tnp_IS1595	PF12760.2	gi|408403599|ref|YP_006861582.1|	-	0.32	10.8	5.6	0.65	9.8	3.9	1.5	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
PhoU	PF01895.14	gi|408403600|ref|YP_006861583.1|	-	5e-28	97.3	2.5	3.7e-18	65.7	0.3	2.1	2	0	0	2	2	2	2	PhoU	domain
CCDC144C	PF14915.1	gi|408403600|ref|YP_006861583.1|	-	0.1	11.5	0.1	0.36	9.7	0.0	1.7	2	0	0	2	2	2	0	CCDC144C	protein	coiled-coil	region
DUF2363	PF10155.4	gi|408403602|ref|YP_006861585.1|	-	0.057	13.3	0.1	0.073	13.0	0.0	1.2	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2363)
zf-met	PF12874.2	gi|408403603|ref|YP_006861586.1|	-	0.02	15.0	0.2	0.028	14.6	0.1	1.3	1	0	0	1	1	1	0	Zinc-finger	of	C2H2	type
DUF4379	PF14311.1	gi|408403603|ref|YP_006861586.1|	-	0.052	13.3	0.6	0.069	12.9	0.2	1.5	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4379)
zf-C2H2_jaz	PF12171.3	gi|408403603|ref|YP_006861586.1|	-	0.12	12.5	0.1	0.17	12.0	0.1	1.3	1	0	0	1	1	1	0	Zinc-finger	double-stranded	RNA-binding
DDE_Tnp_1	PF01609.16	gi|408403607|ref|YP_006861590.1|	-	0.0042	16.6	0.2	0.0078	15.7	0.1	1.5	1	1	0	1	1	1	1	Transposase	DDE	domain
DUF1815	PF08844.5	gi|408403607|ref|YP_006861590.1|	-	0.018	14.6	0.2	0.049	13.2	0.0	1.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1815)
T2SG	PF08334.6	gi|408403611|ref|YP_006861594.1|	-	0.04	13.6	0.0	0.051	13.3	0.0	1.4	1	1	0	1	1	1	0	Type	II	secretion	system	(T2SS),	protein	G
HATPase_c	PF02518.21	gi|408403613|ref|YP_006861596.1|	-	1.9e-28	98.3	1.8	2.1e-27	95.0	0.0	3.1	4	0	0	4	4	4	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.20	gi|408403613|ref|YP_006861596.1|	-	2.5e-12	46.5	1.4	7.2e-12	45.1	1.0	1.9	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_5	PF14501.1	gi|408403613|ref|YP_006861596.1|	-	3.2e-05	23.5	0.3	0.00036	20.1	0.0	2.9	2	0	0	2	2	2	1	GHKL	domain
HATPase_c_2	PF13581.1	gi|408403613|ref|YP_006861596.1|	-	0.00016	21.4	0.0	0.0013	18.5	0.0	2.5	2	0	0	2	2	2	1	Histidine	kinase-like	ATPase	domain
HATPase_c_3	PF13589.1	gi|408403613|ref|YP_006861596.1|	-	0.00055	19.5	0.9	0.0011	18.6	0.0	1.9	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
Condensin2nSMC	PF12422.3	gi|408403613|ref|YP_006861596.1|	-	0.033	13.9	3.9	0.052	13.2	0.1	3.0	3	1	1	4	4	4	0	Condensin	II	non	structural	maintenance	of	chromosomes	subunit
SSPI	PF14098.1	gi|408403614|ref|YP_006861597.1|	-	0.069	13.0	0.0	0.15	12.0	0.0	1.5	1	0	0	1	1	1	0	Small,	acid-soluble	spore	protein	I
RRN7	PF11781.3	gi|408403614|ref|YP_006861597.1|	-	0.11	12.0	0.2	0.21	11.1	0.2	1.5	1	0	0	1	1	1	0	RNA	polymerase	I-specific	transcription	initiation	factor	Rrn7
Cys_rich_CPCC	PF14206.1	gi|408403615|ref|YP_006861598.1|	-	0.04	13.4	2.6	0.064	12.8	0.2	2.0	2	0	0	2	2	2	0	Cysteine-rich	CPCC
zf-C2H2_6	PF13912.1	gi|408403616|ref|YP_006861599.1|	-	0.0012	18.7	0.2	0.0012	18.7	0.1	1.7	3	0	0	3	3	3	1	C2H2-type	zinc	finger
zf-Di19	PF05605.7	gi|408403616|ref|YP_006861599.1|	-	0.0056	16.7	0.6	0.0066	16.5	0.4	1.2	1	0	0	1	1	1	1	Drought	induced	19	protein	(Di19),	zinc-binding
zf-HYPF	PF07503.7	gi|408403616|ref|YP_006861599.1|	-	0.016	14.6	0.3	0.021	14.2	0.2	1.2	1	0	0	1	1	1	0	HypF	finger
zf-C2H2	PF00096.21	gi|408403616|ref|YP_006861599.1|	-	0.018	15.3	0.3	0.025	14.9	0.2	1.3	1	0	0	1	1	1	0	Zinc	finger,	C2H2	type
DUF4187	PF13821.1	gi|408403616|ref|YP_006861599.1|	-	0.027	14.0	0.6	0.036	13.6	0.4	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4187)
zf-C2H2_2	PF12756.2	gi|408403616|ref|YP_006861599.1|	-	0.044	13.9	1.0	0.053	13.6	0.7	1.1	1	0	0	1	1	1	0	C2H2	type	zinc-finger	(2	copies)
zf-C2H2_4	PF13894.1	gi|408403616|ref|YP_006861599.1|	-	0.05	13.9	0.4	0.069	13.5	0.3	1.3	1	0	0	1	1	1	0	C2H2-type	zinc	finger
zf-C4_ClpX	PF06689.8	gi|408403616|ref|YP_006861599.1|	-	0.081	12.4	0.1	0.096	12.2	0.0	1.2	1	0	0	1	1	1	0	ClpX	C4-type	zinc	finger
zf-H2C2_2	PF13465.1	gi|408403616|ref|YP_006861599.1|	-	0.17	12.2	0.2	0.17	12.2	0.2	1.7	2	0	0	2	2	2	0	Zinc-finger	double	domain
Sigma70_ner	PF04546.8	gi|408403618|ref|YP_006861601.1|	-	0.048	13.2	10.7	0.059	12.9	7.4	1.1	1	0	0	1	1	1	0	Sigma-70,	non-essential	region
ADIP	PF11559.3	gi|408403618|ref|YP_006861601.1|	-	0.062	13.1	19.3	0.017	15.0	9.7	1.9	1	1	1	2	2	2	0	Afadin-	and	alpha	-actinin-Binding
Reo_sigmaC	PF04582.7	gi|408403618|ref|YP_006861601.1|	-	0.079	12.1	2.5	0.089	11.9	1.8	1.1	1	0	0	1	1	1	0	Reovirus	sigma	C	capsid	protein
GP41	PF00517.12	gi|408403618|ref|YP_006861601.1|	-	0.11	12.0	6.5	0.27	10.7	4.5	1.7	1	1	0	1	1	1	0	Retroviral	envelope	protein
DUF4194	PF13835.1	gi|408403618|ref|YP_006861601.1|	-	0.13	11.7	3.7	0.19	11.1	2.6	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4194)
Fib_alpha	PF08702.5	gi|408403618|ref|YP_006861601.1|	-	0.21	11.7	11.8	0.082	13.0	6.1	1.8	1	1	1	2	2	2	0	Fibrinogen	alpha/beta	chain	family
Phage_Gp23	PF10669.4	gi|408403618|ref|YP_006861601.1|	-	0.22	11.6	4.1	0.091	12.8	0.7	2.0	1	1	1	2	2	2	0	Protein	gp23	(Bacteriophage	A118)
NPV_P10	PF05531.7	gi|408403618|ref|YP_006861601.1|	-	0.89	9.8	5.4	4.9	7.4	0.7	2.3	1	1	1	2	2	2	0	Nucleopolyhedrovirus	P10	protein
DUF4559	PF15112.1	gi|408403618|ref|YP_006861601.1|	-	0.99	8.5	7.7	0.53	9.4	4.3	1.3	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4559)
BSP_II	PF05432.6	gi|408403618|ref|YP_006861601.1|	-	1.7	7.8	12.5	0.41	9.8	6.6	1.5	2	0	0	2	2	2	0	Bone	sialoprotein	II	(BSP-II)
WES_acyltransf	PF03007.11	gi|408403618|ref|YP_006861601.1|	-	1.7	8.1	6.6	2.8	7.4	2.5	1.9	1	1	1	2	2	2	0	Wax	ester	synthase-like	Acyl-CoA	acyltransferase	domain
V_ATPase_I	PF01496.14	gi|408403618|ref|YP_006861601.1|	-	1.9	6.2	5.6	2.1	6.1	3.9	1.2	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
NSP2_assoc	PF14758.1	gi|408403618|ref|YP_006861601.1|	-	1.9	8.5	8.6	0.73	9.9	3.0	2.1	1	1	1	2	2	2	0	Non-essential	region	of	nsp2	of	arterivirus	polyprotein
DUF3138	PF11336.3	gi|408403618|ref|YP_006861601.1|	-	3.7	5.5	11.2	0.18	9.9	3.8	1.6	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3138)
Syntaxin-6_N	PF09177.6	gi|408403618|ref|YP_006861601.1|	-	3.8	7.9	7.9	0.94	9.9	2.8	1.9	1	1	1	2	2	2	0	Syntaxin	6,	N-terminal
Tweety	PF04906.8	gi|408403618|ref|YP_006861601.1|	-	5.2	5.3	7.0	1.1	7.5	0.6	1.8	1	1	1	2	2	2	0	Tweety
IncA	PF04156.9	gi|408403618|ref|YP_006861601.1|	-	7	6.2	15.8	11	5.5	10.9	1.5	1	1	0	1	1	1	0	IncA	protein
Sec20	PF03908.8	gi|408403618|ref|YP_006861601.1|	-	7.7	6.2	8.0	4.5	7.0	0.7	2.6	1	1	2	3	3	3	0	Sec20
DUF77	PF01910.12	gi|408403619|ref|YP_006861602.1|	-	1.4e-06	27.8	0.1	1.7e-06	27.6	0.1	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF77
Response_reg	PF00072.19	gi|408403620|ref|YP_006861603.1|	-	0.0032	17.4	0.0	0.0048	16.9	0.0	1.3	1	0	0	1	1	1	1	Response	regulator	receiver	domain
Myb_DNA-binding	PF00249.26	gi|408403620|ref|YP_006861603.1|	-	0.0093	16.0	0.1	0.015	15.3	0.1	1.4	1	0	0	1	1	1	1	Myb-like	DNA-binding	domain
RmuC	PF02646.11	gi|408403620|ref|YP_006861603.1|	-	0.037	12.8	0.1	0.04	12.7	0.1	1.2	1	0	0	1	1	1	0	RmuC	family
Bacillus_HBL	PF05791.6	gi|408403620|ref|YP_006861603.1|	-	0.1	11.9	0.1	0.15	11.4	0.1	1.3	1	1	0	1	1	1	0	Bacillus	haemolytic	enterotoxin	(HBL)
Hemerythrin	PF01814.18	gi|408403620|ref|YP_006861603.1|	-	0.12	12.5	0.4	0.24	11.5	0.2	1.3	1	1	0	1	1	1	0	Hemerythrin	HHE	cation	binding	domain
Prefoldin_2	PF01920.15	gi|408403620|ref|YP_006861603.1|	-	0.2	11.4	2.0	0.43	10.3	0.7	1.9	2	0	0	2	2	2	0	Prefoldin	subunit
ERM	PF00769.14	gi|408403622|ref|YP_006861605.1|	-	0.0048	16.4	21.6	0.0048	16.4	15.0	2.2	1	1	1	2	2	2	1	Ezrin/radixin/moesin	family
TrmB	PF01978.14	gi|408403623|ref|YP_006861606.1|	-	2.5e-14	52.7	0.0	7.8e-14	51.1	0.0	1.9	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_5	PF01022.15	gi|408403623|ref|YP_006861606.1|	-	1.6e-05	24.4	0.0	4e-05	23.1	0.0	1.7	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_24	PF13412.1	gi|408403623|ref|YP_006861606.1|	-	0.00019	20.7	0.1	0.00081	18.7	0.0	2.1	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_IclR	PF09339.5	gi|408403623|ref|YP_006861606.1|	-	0.00068	19.1	0.0	0.0014	18.1	0.0	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_9	PF08221.6	gi|408403623|ref|YP_006861606.1|	-	0.0008	19.2	0.1	0.088	12.6	0.0	3.0	3	0	0	3	3	3	1	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
TFIIE_alpha	PF02002.12	gi|408403623|ref|YP_006861606.1|	-	0.0069	15.8	0.2	0.032	13.7	0.0	2.3	1	1	0	1	1	1	1	TFIIE	alpha	subunit
TRC8_N	PF13705.1	gi|408403623|ref|YP_006861606.1|	-	0.0087	14.6	0.1	0.012	14.2	0.1	1.2	1	0	0	1	1	1	1	TRC8	N-terminal	domain
Regulator_TrmB	PF11495.3	gi|408403623|ref|YP_006861606.1|	-	0.01	14.8	1.0	0.073	12.0	0.1	2.1	2	0	0	2	2	2	0	Archaeal	transcriptional	regulator	TrmB
FaeA	PF04703.7	gi|408403623|ref|YP_006861606.1|	-	0.017	15.2	0.0	0.039	14.0	0.0	1.6	1	0	0	1	1	1	0	FaeA-like	protein
MarR_2	PF12802.2	gi|408403623|ref|YP_006861606.1|	-	0.066	12.8	0.0	0.14	11.8	0.0	1.5	1	0	0	1	1	1	0	MarR	family
DUF977	PF06163.6	gi|408403623|ref|YP_006861606.1|	-	0.087	12.5	0.0	0.2	11.4	0.0	1.7	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF977)
HTH_AsnC-type	PF13404.1	gi|408403623|ref|YP_006861606.1|	-	0.12	11.9	0.0	0.34	10.4	0.0	1.7	2	0	0	2	2	2	0	AsnC-type	helix-turn-helix	domain
Arch_flagellin	PF01917.11	gi|408403624|ref|YP_006861607.1|	-	2e-22	79.7	7.9	2.4e-22	79.5	5.5	1.1	1	0	0	1	1	1	1	Archaebacterial	flagellin
EIID-AGA	PF03613.9	gi|408403624|ref|YP_006861607.1|	-	0.0049	15.8	0.7	0.0076	15.2	0.5	1.2	1	0	0	1	1	1	1	PTS	system	mannose/fructose/sorbose	family	IID	component
Tmemb_cc2	PF10267.4	gi|408403625|ref|YP_006861608.1|	-	0.00019	20.1	2.8	0.00019	20.1	1.9	1.6	1	1	0	2	2	2	1	Predicted	transmembrane	and	coiled-coil	2	protein
FlaC_arch	PF05377.6	gi|408403625|ref|YP_006861608.1|	-	0.0045	16.8	3.1	0.011	15.5	2.2	1.7	1	0	0	1	1	1	1	Flagella	accessory	protein	C	(FlaC)
DUF948	PF06103.6	gi|408403625|ref|YP_006861608.1|	-	0.1	12.5	2.0	0.25	11.2	1.4	1.7	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF948)
STAT_alpha	PF01017.15	gi|408403625|ref|YP_006861608.1|	-	0.29	10.8	4.4	5.1	6.7	0.1	2.3	2	0	0	2	2	2	0	STAT	protein,	all-alpha	domain
DUF972	PF06156.8	gi|408403625|ref|YP_006861608.1|	-	1.3	9.4	4.9	0.27	11.5	0.3	2.1	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF972)
Arch_flagellin	PF01917.11	gi|408403626|ref|YP_006861609.1|	-	1.6e-06	27.8	10.3	1.1e-05	25.0	7.2	1.9	1	1	0	1	1	1	1	Archaebacterial	flagellin
DUF2612	PF11041.3	gi|408403626|ref|YP_006861609.1|	-	0.074	12.6	0.0	0.094	12.2	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2612)
IncA	PF04156.9	gi|408403627|ref|YP_006861610.1|	-	0.011	15.3	0.1	0.015	14.9	0.1	1.1	1	0	0	1	1	1	0	IncA	protein
Arch_flagellin	PF01917.11	gi|408403627|ref|YP_006861610.1|	-	0.016	14.8	3.4	0.021	14.4	2.3	1.5	1	1	0	1	1	1	0	Archaebacterial	flagellin
Tad	PF13400.1	gi|408403627|ref|YP_006861610.1|	-	0.1	12.6	0.5	0.19	11.7	0.4	1.5	1	0	0	1	1	1	0	Putative	Flp	pilus-assembly	TadE/G-like
KaiC	PF06745.8	gi|408403628|ref|YP_006861611.1|	-	1e-25	90.1	0.3	1.2e-25	90.0	0.2	1.0	1	0	0	1	1	1	1	KaiC
AAA_25	PF13481.1	gi|408403628|ref|YP_006861611.1|	-	1.7e-11	43.8	0.0	2.6e-11	43.2	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
PAXNEB	PF05625.6	gi|408403628|ref|YP_006861611.1|	-	3.6e-07	29.3	1.6	8.8e-05	21.5	0.2	2.1	1	1	1	2	2	2	2	PAXNEB	protein
AAA_24	PF13479.1	gi|408403628|ref|YP_006861611.1|	-	1.5e-05	24.7	0.0	2.8e-05	23.8	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
DUF835	PF05763.7	gi|408403628|ref|YP_006861611.1|	-	2.4e-05	23.8	0.2	6.3e-05	22.5	0.1	1.8	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF835)
Rad51	PF08423.6	gi|408403628|ref|YP_006861611.1|	-	0.00011	21.2	0.0	0.00015	20.7	0.0	1.2	1	0	0	1	1	1	1	Rad51
AAA_22	PF13401.1	gi|408403628|ref|YP_006861611.1|	-	0.00011	22.3	0.0	0.00023	21.2	0.0	1.4	1	1	0	1	1	1	1	AAA	domain
RecA	PF00154.16	gi|408403628|ref|YP_006861611.1|	-	0.00013	21.2	0.1	0.026	13.6	0.0	2.1	2	0	0	2	2	2	1	recA	bacterial	DNA	recombination	protein
AAA_16	PF13191.1	gi|408403628|ref|YP_006861611.1|	-	0.00029	20.8	0.0	0.00043	20.3	0.0	1.3	1	0	0	1	1	1	1	AAA	ATPase	domain
Arch_ATPase	PF01637.13	gi|408403628|ref|YP_006861611.1|	-	0.00033	20.4	0.0	0.00046	19.9	0.0	1.2	1	0	0	1	1	1	1	Archaeal	ATPase
NACHT	PF05729.7	gi|408403628|ref|YP_006861611.1|	-	0.0014	18.2	0.1	0.0047	16.6	0.0	2.0	2	1	0	2	2	2	1	NACHT	domain
AAA_14	PF13173.1	gi|408403628|ref|YP_006861611.1|	-	0.007	16.2	0.5	0.013	15.3	0.1	1.8	2	1	0	2	2	1	1	AAA	domain
AAA_19	PF13245.1	gi|408403628|ref|YP_006861611.1|	-	0.013	15.2	0.0	0.024	14.3	0.0	1.4	1	0	0	1	1	1	0	Part	of	AAA	domain
RNA_helicase	PF00910.17	gi|408403628|ref|YP_006861611.1|	-	0.014	15.5	0.1	0.044	13.9	0.0	1.8	2	0	0	2	2	2	0	RNA	helicase
Sigma54_activat	PF00158.21	gi|408403628|ref|YP_006861611.1|	-	0.023	14.1	0.0	0.037	13.5	0.0	1.4	1	0	0	1	1	1	0	Sigma-54	interaction	domain
Helicase_RecD	PF05127.9	gi|408403628|ref|YP_006861611.1|	-	0.024	14.2	0.0	0.037	13.6	0.0	1.4	1	1	0	1	1	1	0	Helicase
Elong_Iki1	PF10483.4	gi|408403628|ref|YP_006861611.1|	-	0.025	13.9	0.1	0.035	13.4	0.0	1.2	1	0	0	1	1	1	0	Elongator	subunit	Iki1
DUF2075	PF09848.4	gi|408403628|ref|YP_006861611.1|	-	0.033	13.1	0.0	0.052	12.5	0.0	1.4	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
ResIII	PF04851.10	gi|408403628|ref|YP_006861611.1|	-	0.039	13.7	0.0	0.06	13.1	0.0	1.4	1	0	0	1	1	1	0	Type	III	restriction	enzyme,	res	subunit
UPF0079	PF02367.12	gi|408403628|ref|YP_006861611.1|	-	0.042	13.4	0.1	0.18	11.4	0.0	1.9	2	0	0	2	2	2	0	Uncharacterised	P-loop	hydrolase	UPF0079
ArsA_ATPase	PF02374.10	gi|408403628|ref|YP_006861611.1|	-	0.056	12.4	0.8	1.3	7.9	0.0	2.1	1	1	1	2	2	2	0	Anion-transporting	ATPase
NTPase_1	PF03266.10	gi|408403628|ref|YP_006861611.1|	-	0.057	13.1	0.1	1.6	8.4	0.0	2.8	1	1	0	1	1	1	0	NTPase
IstB_IS21	PF01695.12	gi|408403628|ref|YP_006861611.1|	-	0.062	12.7	0.0	0.2	11.0	0.0	1.7	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
Zot	PF05707.7	gi|408403628|ref|YP_006861611.1|	-	0.078	12.4	0.0	0.14	11.5	0.0	1.5	1	0	0	1	1	1	0	Zonular	occludens	toxin	(Zot)
AAA	PF00004.24	gi|408403628|ref|YP_006861611.1|	-	0.091	12.9	0.2	0.18	11.9	0.2	1.7	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_5	PF07728.9	gi|408403628|ref|YP_006861611.1|	-	0.094	12.4	0.0	0.5	10.0	0.0	2.0	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
DNA_pol3_delta2	PF13177.1	gi|408403628|ref|YP_006861611.1|	-	0.11	12.1	0.0	0.13	11.9	0.0	1.4	1	1	0	1	1	1	0	DNA	polymerase	III,	delta	subunit
AAA_30	PF13604.1	gi|408403628|ref|YP_006861611.1|	-	0.12	11.9	0.0	0.21	11.1	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
T2SF	PF00482.18	gi|408403629|ref|YP_006861612.1|	-	1.5e-05	24.9	8.0	0.0016	18.3	0.3	3.4	3	1	0	3	3	3	2	Type	II	secretion	system	(T2SS),	protein	F
NAGLU_N	PF12971.2	gi|408403629|ref|YP_006861612.1|	-	0.11	12.1	0.0	5.2	6.8	0.0	2.4	2	0	0	2	2	2	0	Alpha-N-acetylglucosaminidase	(NAGLU)	N-terminal	domain
T2SE	PF00437.15	gi|408403630|ref|YP_006861613.1|	-	1.6e-44	151.9	0.0	2.1e-44	151.4	0.0	1.1	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
Kinesin	PF00225.18	gi|408403630|ref|YP_006861613.1|	-	0.078	11.6	0.1	0.12	11.0	0.0	1.2	1	0	0	1	1	1	0	Kinesin	motor	domain
CheR	PF01739.13	gi|408403631|ref|YP_006861614.1|	-	1.4e-55	187.6	0.0	1.9e-55	187.2	0.0	1.2	1	0	0	1	1	1	1	CheR	methyltransferase,	SAM	binding	domain
Methyltransf_18	PF12847.2	gi|408403631|ref|YP_006861614.1|	-	4.8e-07	30.3	0.0	8.6e-07	29.5	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
CheR_N	PF03705.10	gi|408403631|ref|YP_006861614.1|	-	5.6e-07	28.8	0.4	1.3e-06	27.6	0.3	1.7	1	0	0	1	1	1	1	CheR	methyltransferase,	all-alpha	domain
Methyltransf_11	PF08241.7	gi|408403631|ref|YP_006861614.1|	-	3.5e-06	27.3	0.0	1.9e-05	25.0	0.0	2.1	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|408403631|ref|YP_006861614.1|	-	9.6e-06	26.0	0.0	3.2e-05	24.3	0.0	1.8	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|408403631|ref|YP_006861614.1|	-	0.00015	22.0	0.0	0.0003	21.0	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|408403631|ref|YP_006861614.1|	-	0.00035	20.1	0.0	0.64	9.5	0.0	2.2	2	0	0	2	2	2	2	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|408403631|ref|YP_006861614.1|	-	0.0011	18.7	0.0	0.0017	18.1	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_2	PF00891.13	gi|408403631|ref|YP_006861614.1|	-	0.0017	17.6	0.0	0.0027	16.9	0.0	1.3	1	0	0	1	1	1	1	O-methyltransferase
Methyltransf_26	PF13659.1	gi|408403631|ref|YP_006861614.1|	-	0.018	15.0	0.0	0.031	14.2	0.0	1.4	1	0	0	1	1	1	0	Methyltransferase	domain
CheD	PF03975.8	gi|408403632|ref|YP_006861615.1|	-	1e-24	86.5	0.0	1.4e-24	86.0	0.0	1.1	1	0	0	1	1	1	1	CheD	chemotactic	sensory	transduction
CheC	PF04509.7	gi|408403633|ref|YP_006861616.1|	-	3.1e-05	23.6	0.6	8.8e-05	22.1	0.0	2.1	2	0	0	2	2	2	1	CheC-like	family
CheX	PF13690.1	gi|408403633|ref|YP_006861616.1|	-	0.0079	16.0	0.0	0.018	14.8	0.0	1.6	1	0	0	1	1	1	1	Chemotaxis	phosphatase	CheX
Hpt	PF01627.18	gi|408403634|ref|YP_006861617.1|	-	2.2e-22	78.8	1.1	9.6e-22	76.8	0.2	2.2	2	0	0	2	2	2	1	Hpt	domain
CheW	PF01584.14	gi|408403634|ref|YP_006861617.1|	-	2.6e-20	72.3	0.6	5.1e-20	71.3	0.4	1.5	1	0	0	1	1	1	1	CheW-like	domain
HATPase_c	PF02518.21	gi|408403634|ref|YP_006861617.1|	-	8.2e-19	67.3	1.7	8.2e-19	67.3	1.2	2.8	1	1	2	3	3	3	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
H-kinase_dim	PF02895.9	gi|408403634|ref|YP_006861617.1|	-	2.7e-12	46.8	3.6	2.7e-12	46.8	2.5	2.3	2	0	0	2	2	2	1	Signal	transducing	histidine	kinase,	homodimeric	domain
HATPase_c_2	PF13581.1	gi|408403634|ref|YP_006861617.1|	-	0.019	14.7	0.3	0.073	12.8	0.0	2.1	2	0	0	2	2	2	0	Histidine	kinase-like	ATPase	domain
HATPase_c_3	PF13589.1	gi|408403634|ref|YP_006861617.1|	-	0.021	14.4	0.1	0.057	13.0	0.1	1.7	1	1	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
DUF1515	PF07439.6	gi|408403634|ref|YP_006861617.1|	-	1	9.1	4.3	8.6	6.2	0.2	3.1	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF1515)
CheB_methylest	PF01339.12	gi|408403635|ref|YP_006861618.1|	-	2e-65	219.6	0.4	3.5e-65	218.8	0.3	1.4	1	0	0	1	1	1	1	CheB	methylesterase
Response_reg	PF00072.19	gi|408403635|ref|YP_006861618.1|	-	9.9e-21	73.8	0.1	2.4e-20	72.6	0.1	1.7	1	0	0	1	1	1	1	Response	regulator	receiver	domain
Response_reg	PF00072.19	gi|408403636|ref|YP_006861619.1|	-	4.2e-29	100.8	0.8	4.7e-29	100.6	0.6	1.0	1	0	0	1	1	1	1	Response	regulator	receiver	domain
CheW	PF01584.14	gi|408403637|ref|YP_006861620.1|	-	4.2e-34	116.9	0.5	5.3e-34	116.6	0.3	1.1	1	0	0	1	1	1	1	CheW-like	domain
MCPsignal	PF00015.16	gi|408403638|ref|YP_006861621.1|	-	8.7e-52	175.7	47.4	4.2e-46	157.1	20.3	3.1	1	1	1	2	2	2	2	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
DUF948	PF06103.6	gi|408403638|ref|YP_006861621.1|	-	0.00032	20.4	15.8	0.0008	19.2	1.7	4.3	3	1	1	4	4	3	1	Bacterial	protein	of	unknown	function	(DUF948)
APG6	PF04111.7	gi|408403638|ref|YP_006861621.1|	-	0.0075	15.3	12.3	0.011	14.8	1.6	2.7	1	1	2	3	3	3	2	Autophagy	protein	Apg6
DUF2365	PF10157.4	gi|408403638|ref|YP_006861621.1|	-	0.031	14.1	1.5	0.031	14.1	1.0	3.7	2	2	1	4	4	4	0	Uncharacterized	conserved	protein	(DUF2365)
DUF4515	PF14988.1	gi|408403638|ref|YP_006861621.1|	-	0.098	12.3	7.9	0.031	13.9	1.2	2.5	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4515)
Syntaxin-6_N	PF09177.6	gi|408403638|ref|YP_006861621.1|	-	0.14	12.5	13.8	1.1	9.7	0.4	4.0	3	1	1	4	4	4	0	Syntaxin	6,	N-terminal
APG17	PF04108.7	gi|408403638|ref|YP_006861621.1|	-	0.15	10.8	13.4	1.3	7.7	0.6	2.9	1	1	1	2	2	2	0	Autophagy	protein	Apg17
IFT57	PF10498.4	gi|408403638|ref|YP_006861621.1|	-	0.44	9.2	14.7	1.3	7.7	1.6	3.2	2	1	0	2	2	2	0	Intra-flagellar	transport	protein	57
DUF2935	PF11155.3	gi|408403638|ref|YP_006861621.1|	-	0.65	10.0	5.4	25	4.9	0.9	3.9	2	2	0	2	2	2	0	Domain	of	unknown	function	(DUF2935)
DUF1664	PF07889.7	gi|408403638|ref|YP_006861621.1|	-	0.84	9.4	20.5	0.063	13.0	2.2	4.2	2	1	3	5	5	5	0	Protein	of	unknown	function	(DUF1664)
MutS_III	PF05192.13	gi|408403638|ref|YP_006861621.1|	-	0.89	9.2	10.8	1e+02	2.5	7.5	2.8	1	1	0	1	1	1	0	MutS	domain	III
Fib_alpha	PF08702.5	gi|408403638|ref|YP_006861621.1|	-	1.2	9.3	14.6	1.8	8.7	2.1	3.8	2	2	1	3	3	3	0	Fibrinogen	alpha/beta	chain	family
Sec8_exocyst	PF04048.9	gi|408403638|ref|YP_006861621.1|	-	1.8	8.2	12.8	0.1	12.2	0.6	3.5	3	1	1	4	4	4	0	Sec8	exocyst	complex	component	specific	domain
Dak2	PF02734.12	gi|408403638|ref|YP_006861621.1|	-	1.8	8.2	27.1	2.9	7.5	4.3	3.4	2	1	1	3	3	3	0	DAK2	domain
DUF3647	PF12363.3	gi|408403638|ref|YP_006861621.1|	-	2.3	8.3	11.3	0.39	10.8	0.5	3.6	3	1	1	4	4	4	0	Phage	protein
PhageMin_Tail	PF10145.4	gi|408403638|ref|YP_006861621.1|	-	2.3	7.8	30.2	0.14	11.7	9.6	3.1	1	1	1	2	2	2	0	Phage-related	minor	tail	protein
TMPIT	PF07851.8	gi|408403638|ref|YP_006861621.1|	-	3.6	6.5	9.0	2.4	7.1	0.3	2.9	2	1	1	3	3	3	0	TMPIT-like	protein
DUF972	PF06156.8	gi|408403638|ref|YP_006861621.1|	-	5.1	7.5	8.2	4.4	7.6	0.2	3.5	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF972)
Reo_sigmaC	PF04582.7	gi|408403638|ref|YP_006861621.1|	-	7.7	5.5	23.9	4.7	6.2	6.5	3.1	1	1	1	3	3	3	0	Reovirus	sigma	C	capsid	protein
Atg14	PF10186.4	gi|408403638|ref|YP_006861621.1|	-	9	5.1	14.3	1.7	7.5	2.0	2.9	1	1	1	3	3	3	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
MCPsignal	PF00015.16	gi|408403639|ref|YP_006861622.1|	-	1.5e-12	47.5	3.4	2.4e-12	46.8	2.4	1.3	1	0	0	1	1	1	1	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
Cache_1	PF02743.13	gi|408403639|ref|YP_006861622.1|	-	0.059	12.9	0.0	0.22	11.0	0.0	1.9	1	1	0	1	1	1	0	Cache	domain
OrfB_IS605	PF01385.14	gi|408403643|ref|YP_006861626.1|	-	8.4e-32	110.4	0.7	1e-31	110.1	0.5	1.1	1	0	0	1	1	1	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.6	gi|408403643|ref|YP_006861626.1|	-	1.3e-12	47.1	1.8	2.4e-12	46.3	1.2	1.4	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
ATP-sulfurylase	PF01747.12	gi|408403645|ref|YP_006861628.1|	-	6.6e-87	290.3	0.3	8.4e-87	289.9	0.2	1.1	1	0	0	1	1	1	1	ATP-sulfurylase
PUA_2	PF14306.1	gi|408403645|ref|YP_006861628.1|	-	9.7e-43	145.3	0.0	1.5e-42	144.6	0.0	1.3	1	0	0	1	1	1	1	PUA-like	domain
PAPS_reduct	PF01507.14	gi|408403646|ref|YP_006861629.1|	-	2.4e-44	151.2	0.0	2.9e-44	150.9	0.0	1.1	1	0	0	1	1	1	1	Phosphoadenosine	phosphosulfate	reductase	family
OrfB_IS605	PF01385.14	gi|408403647|ref|YP_006861630.1|	-	1.1e-26	93.6	5.5	3.1e-26	92.1	3.8	1.7	1	1	0	1	1	1	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.6	gi|408403647|ref|YP_006861630.1|	-	1.2e-22	79.3	0.3	2.2e-22	78.4	0.2	1.5	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
HTH_OrfB_IS605	PF12323.3	gi|408403647|ref|YP_006861630.1|	-	2.2e-15	55.6	0.2	9e-15	53.7	0.1	2.1	1	0	0	1	1	1	1	Helix-turn-helix	domain
DZR	PF12773.2	gi|408403647|ref|YP_006861630.1|	-	0.014	15.2	0.4	0.033	13.9	0.3	1.6	1	0	0	1	1	1	0	Double	zinc	ribbon
FYVE	PF01363.16	gi|408403647|ref|YP_006861630.1|	-	0.024	14.5	0.0	0.055	13.3	0.0	1.6	1	0	0	1	1	1	0	FYVE	zinc	finger
zf-ribbon_3	PF13248.1	gi|408403647|ref|YP_006861630.1|	-	0.092	11.9	2.8	1.2	8.3	1.4	2.7	2	1	1	3	3	3	0	zinc-ribbon	domain
zinc_ribbon_2	PF13240.1	gi|408403647|ref|YP_006861630.1|	-	0.096	12.2	1.3	0.51	9.9	0.5	2.4	2	1	1	3	3	3	0	zinc-ribbon	domain
Ribosomal_L37e	PF01907.14	gi|408403647|ref|YP_006861630.1|	-	2.8	7.7	5.5	0.52	10.1	0.3	2.2	2	0	0	2	2	2	0	Ribosomal	protein	L37e
HIT	PF01230.18	gi|408403649|ref|YP_006861632.1|	-	1.3e-23	83.3	0.2	1.8e-23	82.8	0.1	1.1	1	0	0	1	1	1	1	HIT	domain
DcpS_C	PF11969.3	gi|408403649|ref|YP_006861632.1|	-	7.9e-17	61.5	0.0	9.9e-17	61.2	0.0	1.1	1	0	0	1	1	1	1	Scavenger	mRNA	decapping	enzyme	C-term	binding
CwfJ_C_1	PF04677.10	gi|408403649|ref|YP_006861632.1|	-	0.00089	18.8	0.2	0.0017	17.9	0.1	1.6	1	1	0	1	1	1	1	Protein	similar	to	CwfJ	C-terminus	1
HAD_2	PF13419.1	gi|408403650|ref|YP_006861633.1|	-	6.7e-20	72.0	0.0	9e-20	71.6	0.0	1.2	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.1	gi|408403650|ref|YP_006861633.1|	-	1.1e-12	47.4	0.0	1.7e-12	46.8	0.0	1.3	1	0	0	1	1	1	1	HAD-hyrolase-like
Hydrolase	PF00702.21	gi|408403650|ref|YP_006861633.1|	-	4.9e-08	33.6	0.0	6.4e-08	33.2	0.0	1.4	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
PGP_phosphatase	PF09419.5	gi|408403650|ref|YP_006861633.1|	-	0.0023	17.3	0.0	0.0036	16.6	0.0	1.3	1	0	0	1	1	1	1	Mitochondrial	PGP	phosphatase
DDE_Tnp_1	PF01609.16	gi|408403651|ref|YP_006861634.1|	-	0.0042	16.6	0.2	0.0078	15.7	0.1	1.5	1	1	0	1	1	1	1	Transposase	DDE	domain
DUF1815	PF08844.5	gi|408403651|ref|YP_006861634.1|	-	0.018	14.6	0.2	0.049	13.2	0.0	1.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1815)
Phage_integrase	PF00589.17	gi|408403652|ref|YP_006861635.1|	-	0.01	15.5	0.0	0.018	14.7	0.0	1.5	1	0	0	1	1	1	0	Phage	integrase	family
Rhodanese	PF00581.15	gi|408403654|ref|YP_006861637.1|	-	1e-43	148.2	0.1	1.6e-23	83.1	0.0	2.1	2	0	0	2	2	2	2	Rhodanese-like	domain
ComA	PF02679.10	gi|408403656|ref|YP_006861639.1|	-	5.2e-49	166.4	0.3	1e-48	165.5	0.1	1.5	2	0	0	2	2	2	1	(2R)-phospho-3-sulfolactate	synthase	(ComA)
HTH_36	PF13730.1	gi|408403656|ref|YP_006861639.1|	-	4.7e-05	23.4	0.0	9.6e-05	22.4	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
TrmB	PF01978.14	gi|408403656|ref|YP_006861639.1|	-	0.00066	19.3	0.0	0.0013	18.3	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_43	PF09904.4	gi|408403656|ref|YP_006861639.1|	-	0.0026	17.5	0.0	0.0094	15.7	0.0	1.9	2	0	0	2	2	2	1	Winged	helix-turn	helix
MarR_2	PF12802.2	gi|408403656|ref|YP_006861639.1|	-	0.0054	16.3	0.1	0.019	14.6	0.0	2.0	2	0	0	2	2	2	1	MarR	family
MarR	PF01047.17	gi|408403656|ref|YP_006861639.1|	-	0.043	13.5	0.2	0.086	12.5	0.1	1.5	1	0	0	1	1	1	0	MarR	family
HTH_11	PF08279.7	gi|408403656|ref|YP_006861639.1|	-	0.051	13.2	0.1	0.13	11.9	0.0	1.7	1	0	0	1	1	1	0	HTH	domain
HTH_27	PF13463.1	gi|408403656|ref|YP_006861639.1|	-	0.057	13.7	0.0	0.12	12.6	0.0	1.5	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_24	PF13412.1	gi|408403656|ref|YP_006861639.1|	-	0.074	12.4	0.0	0.14	11.5	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
RNA_pol_Rpc34	PF05158.7	gi|408403656|ref|YP_006861639.1|	-	0.087	11.9	0.0	0.13	11.4	0.0	1.2	1	0	0	1	1	1	0	RNA	polymerase	Rpc34	subunit
HTH_Crp_2	PF13545.1	gi|408403656|ref|YP_006861639.1|	-	0.15	11.8	0.1	0.37	10.6	0.0	1.6	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
NMT1_2	PF13379.1	gi|408403657|ref|YP_006861640.1|	-	1.7e-34	119.3	0.0	2.5e-34	118.7	0.0	1.2	1	0	0	1	1	1	1	NMT1-like	family
NMT1	PF09084.6	gi|408403657|ref|YP_006861640.1|	-	9.8e-14	51.4	0.1	1.5e-13	50.8	0.1	1.3	1	0	0	1	1	1	1	NMT1/THI5	like
Phosphonate-bd	PF12974.2	gi|408403657|ref|YP_006861640.1|	-	8.8e-12	44.9	0.0	1.2e-11	44.5	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter,	phosphonate,	periplasmic	substrate-binding	protein
OpuAC	PF04069.7	gi|408403657|ref|YP_006861640.1|	-	0.00084	18.7	0.2	0.0016	17.8	0.1	1.6	1	1	0	1	1	1	1	Substrate	binding	domain	of	ABC-type	glycine	betaine	transport	system
UPF0228	PF05727.6	gi|408403657|ref|YP_006861640.1|	-	0.076	12.7	0.2	0.14	11.8	0.1	1.4	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0228)
ABC_tran	PF00005.22	gi|408403658|ref|YP_006861641.1|	-	2.3e-31	108.9	0.0	3.8e-31	108.2	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|408403658|ref|YP_006861641.1|	-	6.8e-10	39.3	4.0	6.5e-06	26.3	0.1	2.3	1	1	1	2	2	2	2	AAA	domain
AAA_15	PF13175.1	gi|408403658|ref|YP_006861641.1|	-	1.9e-08	33.7	1.6	0.00055	19.1	0.2	2.2	1	1	0	2	2	2	2	AAA	ATPase	domain
DUF258	PF03193.11	gi|408403658|ref|YP_006861641.1|	-	2.1e-06	27.0	0.0	3.6e-06	26.2	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
ABC_ATPase	PF09818.4	gi|408403658|ref|YP_006861641.1|	-	9.1e-06	24.5	0.4	0.0055	15.3	0.0	2.3	2	0	0	2	2	2	2	Predicted	ATPase	of	the	ABC	class
SMC_N	PF02463.14	gi|408403658|ref|YP_006861641.1|	-	6.3e-05	22.3	2.4	0.0014	17.9	1.7	2.2	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_25	PF13481.1	gi|408403658|ref|YP_006861641.1|	-	0.00087	18.7	0.0	0.0034	16.8	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.1	gi|408403658|ref|YP_006861641.1|	-	0.0014	18.6	0.3	0.0024	17.8	0.2	1.7	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_29	PF13555.1	gi|408403658|ref|YP_006861641.1|	-	0.0018	17.7	0.0	0.004	16.6	0.0	1.6	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_19	PF13245.1	gi|408403658|ref|YP_006861641.1|	-	0.0026	17.4	0.2	1.1	9.0	0.0	2.7	2	1	1	3	3	3	1	Part	of	AAA	domain
AAA_17	PF13207.1	gi|408403658|ref|YP_006861641.1|	-	0.0078	17.0	1.2	0.016	15.9	0.8	2.0	1	1	0	1	1	1	1	AAA	domain
NB-ARC	PF00931.17	gi|408403658|ref|YP_006861641.1|	-	0.01	14.6	0.0	0.019	13.8	0.0	1.4	1	0	0	1	1	1	0	NB-ARC	domain
AAA_18	PF13238.1	gi|408403658|ref|YP_006861641.1|	-	0.012	15.9	1.2	0.031	14.6	0.8	2.0	1	1	0	1	1	1	0	AAA	domain
AAA_22	PF13401.1	gi|408403658|ref|YP_006861641.1|	-	0.012	15.7	0.5	0.13	12.4	0.0	2.4	3	0	0	3	3	2	0	AAA	domain
KaiC	PF06745.8	gi|408403658|ref|YP_006861641.1|	-	0.012	14.7	0.0	0.61	9.1	0.0	2.3	2	0	0	2	2	2	0	KaiC
MMR_HSR1	PF01926.18	gi|408403658|ref|YP_006861641.1|	-	0.014	15.3	0.8	0.029	14.3	0.6	1.8	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
Arch_ATPase	PF01637.13	gi|408403658|ref|YP_006861641.1|	-	0.014	15.1	0.0	0.027	14.1	0.0	1.6	1	1	0	1	1	1	0	Archaeal	ATPase
Miro	PF08477.8	gi|408403658|ref|YP_006861641.1|	-	0.014	15.8	0.1	0.056	13.9	0.0	1.9	2	0	0	2	2	2	0	Miro-like	protein
AAA	PF00004.24	gi|408403658|ref|YP_006861641.1|	-	0.02	15.1	0.3	2.7	8.1	0.0	2.5	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_10	PF12846.2	gi|408403658|ref|YP_006861641.1|	-	0.023	14.1	0.4	0.078	12.4	0.0	1.8	2	0	0	2	2	2	0	AAA-like	domain
AAA_28	PF13521.1	gi|408403658|ref|YP_006861641.1|	-	0.04	13.8	0.8	0.099	12.6	0.0	2.1	2	1	0	2	2	2	0	AAA	domain
AAA_14	PF13173.1	gi|408403658|ref|YP_006861641.1|	-	0.049	13.5	0.0	0.15	11.9	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
Septin	PF00735.13	gi|408403658|ref|YP_006861641.1|	-	0.073	12.0	0.0	0.12	11.3	0.0	1.3	1	0	0	1	1	1	0	Septin
SbcCD_C	PF13558.1	gi|408403658|ref|YP_006861641.1|	-	0.093	12.6	0.3	0.79	9.6	0.2	2.2	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
MobB	PF03205.9	gi|408403658|ref|YP_006861641.1|	-	0.1	12.2	0.3	0.35	10.5	0.1	2.0	2	0	0	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
NACHT	PF05729.7	gi|408403658|ref|YP_006861641.1|	-	0.1	12.2	0.0	0.22	11.1	0.0	1.5	1	0	0	1	1	1	0	NACHT	domain
Dynamin_N	PF00350.18	gi|408403658|ref|YP_006861641.1|	-	0.13	12.0	0.2	0.32	10.8	0.2	1.7	1	0	0	1	1	1	0	Dynamin	family
BPD_transp_1	PF00528.17	gi|408403659|ref|YP_006861642.1|	-	6.3e-12	45.3	23.0	6.3e-12	45.3	16.0	2.1	1	1	2	3	3	3	1	Binding-protein-dependent	transport	system	inner	membrane	component
OrfB_IS605	PF01385.14	gi|408403660|ref|YP_006861643.1|	-	4.3e-13	49.1	0.2	4.9e-13	49.0	0.1	1.0	1	0	0	1	1	1	1	Probable	transposase
HTH_OrfB_IS605	PF12323.3	gi|408403661|ref|YP_006861644.1|	-	6.7e-13	47.7	0.3	6.7e-13	47.7	0.2	1.8	2	0	0	2	2	2	1	Helix-turn-helix	domain
DAO	PF01266.19	gi|408403662|ref|YP_006861645.1|	-	5.3e-09	35.4	0.2	0.00039	19.4	0.0	2.2	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.19	gi|408403662|ref|YP_006861645.1|	-	6.9e-07	28.4	1.4	0.0083	15.0	0.0	2.2	2	0	0	2	2	2	2	FAD	binding	domain
Trp_halogenase	PF04820.9	gi|408403662|ref|YP_006861645.1|	-	8.5e-05	21.3	0.4	0.015	13.9	0.1	2.2	2	0	0	2	2	2	2	Tryptophan	halogenase
Lycopene_cycl	PF05834.7	gi|408403662|ref|YP_006861645.1|	-	0.0016	17.3	0.1	0.0023	16.8	0.1	1.3	1	1	0	1	1	1	1	Lycopene	cyclase	protein
FAD_oxidored	PF12831.2	gi|408403662|ref|YP_006861645.1|	-	0.011	14.8	2.0	0.032	13.3	1.4	1.7	1	1	0	1	1	1	0	FAD	dependent	oxidoreductase
GDI	PF00996.13	gi|408403662|ref|YP_006861645.1|	-	0.012	13.9	0.0	0.018	13.4	0.0	1.2	1	0	0	1	1	1	0	GDP	dissociation	inhibitor
FAD_binding_3	PF01494.14	gi|408403662|ref|YP_006861645.1|	-	0.018	14.0	0.4	1.1	8.2	0.0	2.7	2	1	0	2	2	2	0	FAD	binding	domain
HI0933_like	PF03486.9	gi|408403662|ref|YP_006861645.1|	-	0.029	12.8	0.1	0.055	11.9	0.0	1.4	1	0	0	1	1	1	0	HI0933-like	protein
Thi4	PF01946.12	gi|408403662|ref|YP_006861645.1|	-	0.033	13.2	0.5	0.22	10.5	0.1	2.3	3	0	0	3	3	3	0	Thi4	family
Pyr_redox_2	PF07992.9	gi|408403662|ref|YP_006861645.1|	-	0.15	11.8	1.6	0.42	10.4	1.0	1.9	1	1	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
CorA	PF01544.13	gi|408403664|ref|YP_006861647.1|	-	0.026	13.5	0.1	0.029	13.3	0.1	1.1	1	0	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
DUF310	PF03750.8	gi|408403664|ref|YP_006861647.1|	-	0.08	13.1	0.0	0.092	12.9	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF310)
Translin	PF01997.11	gi|408403665|ref|YP_006861648.1|	-	6e-27	94.5	0.5	6.7e-27	94.3	0.3	1.0	1	0	0	1	1	1	1	Translin	family
OrfB_Zn_ribbon	PF07282.6	gi|408403666|ref|YP_006861649.1|	-	8.8e-23	79.7	0.6	1.7e-22	78.8	0.4	1.5	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.14	gi|408403666|ref|YP_006861649.1|	-	4.2e-21	75.4	6.3	7.9e-21	74.4	4.4	1.4	1	0	0	1	1	1	1	Probable	transposase
HTH_OrfB_IS605	PF12323.3	gi|408403666|ref|YP_006861649.1|	-	7.6e-13	47.5	0.1	2.5e-12	45.9	0.1	2.0	1	0	0	1	1	1	1	Helix-turn-helix	domain
HypA	PF01155.14	gi|408403666|ref|YP_006861649.1|	-	0.0042	16.7	0.1	0.0084	15.7	0.1	1.4	1	0	0	1	1	1	1	Hydrogenase	expression/synthesis	hypA	family
DZR	PF12773.2	gi|408403666|ref|YP_006861649.1|	-	0.081	12.7	0.4	0.18	11.6	0.3	1.6	1	0	0	1	1	1	0	Double	zinc	ribbon
FKS1_dom1	PF14288.1	gi|408403666|ref|YP_006861649.1|	-	0.13	12.1	1.5	0.64	9.9	0.2	2.2	2	0	0	2	2	2	0	1,3-beta-glucan	synthase	subunit	FKS1,	domain-1
zf-ribbon_3	PF13248.1	gi|408403666|ref|YP_006861649.1|	-	0.35	10.1	1.6	25	4.2	2.3	2.4	1	1	1	2	2	2	0	zinc-ribbon	domain
zf-C3HC4_3	PF13920.1	gi|408403666|ref|YP_006861649.1|	-	0.61	9.8	3.9	0.19	11.4	0.7	1.7	2	0	0	2	2	2	0	Zinc	finger,	C3HC4	type	(RING	finger)
Rpr2	PF04032.11	gi|408403666|ref|YP_006861649.1|	-	2.7	7.9	8.3	57	3.6	0.2	3.8	2	1	0	2	2	2	0	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
Hjc	PF01870.13	gi|408403667|ref|YP_006861650.1|	-	1.8e-09	37.0	0.0	3.4e-09	36.1	0.0	1.4	1	0	0	1	1	1	1	Archaeal	holliday	junction	resolvase	(hjc)
VRR_NUC	PF08774.6	gi|408403667|ref|YP_006861650.1|	-	0.065	13.2	0.0	0.14	12.2	0.0	1.6	1	0	0	1	1	1	0	VRR-NUC	domain
RRM_2	PF04059.7	gi|408403667|ref|YP_006861650.1|	-	0.079	12.9	0.1	0.16	11.9	0.0	1.5	1	1	0	1	1	1	0	RNA	recognition	motif	2
Cyclophil_like	PF04126.8	gi|408403668|ref|YP_006861651.1|	-	2.4e-35	120.7	0.0	2.9e-35	120.4	0.0	1.1	1	0	0	1	1	1	1	Cyclophilin-like
DUF3830	PF12903.2	gi|408403668|ref|YP_006861651.1|	-	0.021	14.2	0.0	0.033	13.5	0.0	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3830)
Lactamase_B	PF00753.22	gi|408403669|ref|YP_006861652.1|	-	1e-10	41.5	5.2	4.7e-10	39.4	2.8	2.3	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.2	gi|408403669|ref|YP_006861652.1|	-	1.2e-06	28.2	0.1	2.1e-06	27.4	0.1	1.6	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_3	PF13483.1	gi|408403669|ref|YP_006861652.1|	-	2.2e-05	24.2	0.6	6e-05	22.8	0.4	1.7	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
DUF3006	PF11213.3	gi|408403670|ref|YP_006861653.1|	-	2.8e-09	36.5	0.0	3.4e-09	36.3	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3006)
Ribosomal_S7e	PF01251.13	gi|408403670|ref|YP_006861653.1|	-	0.0079	15.6	0.3	0.0095	15.4	0.2	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S7e
CsgE	PF10627.4	gi|408403670|ref|YP_006861653.1|	-	0.11	12.3	0.0	0.12	12.1	0.0	1.2	1	0	0	1	1	1	0	Curli	assembly	protein	CsgE
Hexapep	PF00132.19	gi|408403671|ref|YP_006861654.1|	-	1.7e-15	55.7	17.3	2.3e-07	29.9	0.1	5.5	3	1	2	5	5	5	5	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.1	gi|408403671|ref|YP_006861654.1|	-	2e-05	24.0	16.0	0.037	13.5	0.1	4.2	4	1	1	5	5	5	4	Hexapeptide	repeat	of	succinyl-transferase
Fucokinase	PF07959.7	gi|408403671|ref|YP_006861654.1|	-	0.0019	16.8	0.2	0.32	9.5	0.0	2.3	1	1	1	2	2	2	2	L-fucokinase
Peptidase_S8	PF00082.17	gi|408403672|ref|YP_006861655.1|	-	5.3e-57	193.1	2.5	7.3e-57	192.6	1.7	1.1	1	0	0	1	1	1	1	Subtilase	family
Response_reg	PF00072.19	gi|408403673|ref|YP_006861656.1|	-	3.9e-16	59.0	0.0	4.4e-16	58.8	0.0	1.1	1	0	0	1	1	1	1	Response	regulator	receiver	domain
TFIIB	PF00382.14	gi|408403674|ref|YP_006861657.1|	-	5e-32	109.5	2.6	1.2e-15	57.0	0.1	2.2	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
Sigma70_r4	PF04545.11	gi|408403674|ref|YP_006861657.1|	-	2.1e-05	23.7	0.0	0.0027	16.9	0.0	2.7	2	0	0	2	2	2	1	Sigma-70,	region	4
HTH_AsnC-type	PF13404.1	gi|408403674|ref|YP_006861657.1|	-	4.9e-05	22.7	0.3	0.0005	19.5	0.0	2.8	3	0	0	3	3	3	1	AsnC-type	helix-turn-helix	domain
HTH_11	PF08279.7	gi|408403674|ref|YP_006861657.1|	-	8.9e-05	22.0	0.1	0.015	14.9	0.0	2.7	2	0	0	2	2	2	1	HTH	domain
Rrf2	PF02082.15	gi|408403674|ref|YP_006861657.1|	-	0.0066	16.5	0.1	7	6.8	0.0	2.8	2	1	1	3	3	3	2	Transcriptional	regulator
GerE	PF00196.14	gi|408403674|ref|YP_006861657.1|	-	0.0075	15.5	1.0	0.46	9.8	0.0	3.2	3	0	0	3	3	3	1	Bacterial	regulatory	proteins,	luxR	family
Cyclin_N	PF00134.18	gi|408403674|ref|YP_006861657.1|	-	0.0091	15.5	0.0	2.5	7.6	0.0	2.2	2	0	0	2	2	2	2	Cyclin,	N-terminal	domain
HTH_24	PF13412.1	gi|408403674|ref|YP_006861657.1|	-	0.014	14.7	0.4	0.053	12.9	0.0	2.3	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
Sigma70_r4_2	PF08281.7	gi|408403674|ref|YP_006861657.1|	-	0.018	14.4	0.1	0.13	11.7	0.0	2.4	2	0	0	2	2	2	0	Sigma-70,	region	4
HTH_23	PF13384.1	gi|408403674|ref|YP_006861657.1|	-	0.042	13.5	0.4	0.36	10.5	0.0	2.7	3	0	0	3	3	3	0	Homeodomain-like	domain
HTH_Tnp_ISL3	PF13542.1	gi|408403674|ref|YP_006861657.1|	-	0.082	12.1	0.2	1.3	8.2	0.0	2.8	3	0	0	3	3	3	0	Helix-turn-helix	domain	of	transposase	family	ISL3
LacI	PF00356.16	gi|408403674|ref|YP_006861657.1|	-	0.12	12.0	4.1	0.56	9.8	0.0	3.4	3	1	0	3	3	3	0	Bacterial	regulatory	proteins,	lacI	family
Crp	PF00325.15	gi|408403674|ref|YP_006861657.1|	-	0.27	10.7	1.6	21	4.6	0.0	3.0	2	1	1	3	3	3	0	Bacterial	regulatory	proteins,	crp	family
BNR	PF02012.15	gi|408403675|ref|YP_006861658.1|	-	0.00077	18.9	0.1	1	9.4	0.0	3.1	2	0	0	2	2	2	2	BNR/Asp-box	repeat
BNR_2	PF13088.1	gi|408403675|ref|YP_006861658.1|	-	0.0053	16.0	0.3	0.0062	15.8	0.2	1.2	1	0	0	1	1	1	1	BNR	repeat-like	domain
DDE_Tnp_1	PF01609.16	gi|408403677|ref|YP_006861660.1|	-	0.0042	16.6	0.2	0.0078	15.7	0.1	1.5	1	1	0	1	1	1	1	Transposase	DDE	domain
DUF1815	PF08844.5	gi|408403677|ref|YP_006861660.1|	-	0.018	14.6	0.2	0.049	13.2	0.0	1.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1815)
Cation_efflux	PF01545.16	gi|408403679|ref|YP_006861662.1|	-	4.2e-66	222.9	15.9	2.2e-48	164.7	5.2	3.0	3	0	0	3	3	3	3	Cation	efflux	family
AMP-binding_C_2	PF14535.1	gi|408403679|ref|YP_006861662.1|	-	0.0019	18.2	0.2	0.01	15.8	0.0	2.2	2	0	0	2	2	2	1	AMP-binding	enzyme	C-terminal	domain
BON	PF04972.12	gi|408403679|ref|YP_006861662.1|	-	0.099	12.4	4.6	0.39	10.4	0.0	3.6	4	0	0	4	4	4	0	BON	domain
Peptidase_A24	PF01478.13	gi|408403679|ref|YP_006861662.1|	-	6	7.0	12.4	39	4.4	8.6	2.2	1	1	0	1	1	1	0	Type	IV	leader	peptidase	family
Response_reg	PF00072.19	gi|408403680|ref|YP_006861663.1|	-	3e-27	94.8	0.0	3.4e-27	94.6	0.0	1.0	1	0	0	1	1	1	1	Response	regulator	receiver	domain
Carb_kinase	PF01256.12	gi|408403681|ref|YP_006861664.1|	-	1.3e-43	149.0	0.9	1.5e-43	148.7	0.6	1.0	1	0	0	1	1	1	1	Carbohydrate	kinase
HK	PF02110.10	gi|408403681|ref|YP_006861664.1|	-	8.7e-11	41.4	0.9	2.1e-10	40.1	0.6	1.6	1	1	0	1	1	1	1	Hydroxyethylthiazole	kinase	family
Phos_pyr_kin	PF08543.7	gi|408403681|ref|YP_006861664.1|	-	9.6e-06	24.9	0.1	4e-05	22.9	0.0	1.9	1	1	0	1	1	1	1	Phosphomethylpyrimidine	kinase
DUF4257	PF14074.1	gi|408403681|ref|YP_006861664.1|	-	0.018	14.7	0.0	0.041	13.5	0.0	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4257)
tRNA_bind	PF01588.15	gi|408403682|ref|YP_006861665.1|	-	7.2e-19	67.4	0.1	8.4e-19	67.2	0.0	1.1	1	0	0	1	1	1	1	Putative	tRNA	binding	domain
DUF1529	PF07485.6	gi|408403685|ref|YP_006861668.1|	-	9e-11	41.5	0.1	3e-10	39.8	0.1	1.9	1	1	1	2	2	2	1	Domain	of	Unknown	Function	(DUF1259)
TraC	PF07820.7	gi|408403685|ref|YP_006861668.1|	-	4.7	7.4	7.4	3.3	7.9	0.1	2.3	2	0	0	2	2	2	0	TraC-like	protein
Usp	PF00582.21	gi|408403687|ref|YP_006861670.1|	-	6.5e-11	42.5	0.0	7.9e-11	42.3	0.0	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
DUF756	PF05506.7	gi|408403687|ref|YP_006861670.1|	-	0.041	14.3	0.0	0.047	14.1	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF756)
CDC48_N	PF02359.13	gi|408403689|ref|YP_006861672.1|	-	0.00079	19.3	0.1	0.00083	19.2	0.1	1.3	1	1	0	1	1	1	1	Cell	division	protein	48	(CDC48),	N-terminal	domain
CDC48_N	PF02359.13	gi|408403690|ref|YP_006861673.1|	-	0.00049	19.9	0.2	0.00086	19.2	0.0	1.5	2	0	0	2	2	2	1	Cell	division	protein	48	(CDC48),	N-terminal	domain
SNF2_N	PF00176.18	gi|408403691|ref|YP_006861674.1|	-	0.056	12.2	0.4	0.075	11.8	0.3	1.1	1	0	0	1	1	1	0	SNF2	family	N-terminal	domain
V-ATPase_G	PF03179.10	gi|408403691|ref|YP_006861674.1|	-	0.089	13.0	1.3	0.22	11.8	0.9	1.6	1	0	0	1	1	1	0	Vacuolar	(H+)-ATPase	G	subunit
EF-hand_like	PF09279.6	gi|408403691|ref|YP_006861674.1|	-	0.17	11.9	2.3	0.24	11.4	1.1	1.8	1	1	1	2	2	2	0	Phosphoinositide-specific	phospholipase	C,	efhand-like
DUF308	PF03729.8	gi|408403692|ref|YP_006861675.1|	-	0.0019	18.1	12.7	0.62	10.1	0.1	3.3	3	0	0	3	3	3	2	Short	repeat	of	unknown	function	(DUF308)
TctB	PF07331.6	gi|408403692|ref|YP_006861675.1|	-	0.073	12.7	11.5	6.4	6.4	1.4	3.1	2	1	0	3	3	3	0	Tripartite	tricarboxylate	transporter	TctB	family
Adeno_E3B	PF03376.9	gi|408403692|ref|YP_006861675.1|	-	0.088	12.7	0.8	2.5	8.0	0.0	2.7	3	1	0	3	3	3	0	Adenovirus	E3B	protein
YfhO	PF09586.5	gi|408403692|ref|YP_006861675.1|	-	0.23	9.4	6.0	0.29	9.1	4.2	1.2	1	0	0	1	1	1	0	Bacterial	membrane	protein	YfhO
PMP22_Claudin	PF00822.15	gi|408403692|ref|YP_006861675.1|	-	0.34	10.5	6.2	0.79	9.3	3.8	2.1	1	1	0	1	1	1	0	PMP-22/EMP/MP20/Claudin	family
Peptidase_U4	PF03419.8	gi|408403692|ref|YP_006861675.1|	-	2.1	7.3	10.1	2.6	7.0	7.0	1.2	1	0	0	1	1	1	0	Sporulation	factor	SpoIIGA
DUF373	PF04123.8	gi|408403692|ref|YP_006861675.1|	-	2.7	6.9	13.5	0.66	8.9	6.2	2.0	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF373)
YtpI	PF14007.1	gi|408403692|ref|YP_006861675.1|	-	4	7.4	18.5	1.8	8.5	6.2	3.2	1	1	2	3	3	3	0	YtpI-like	protein
DUF3671	PF12420.3	gi|408403692|ref|YP_006861675.1|	-	5.2	7.1	5.7	20	5.2	2.9	2.2	1	1	0	2	2	2	0	Protein	of	unknown	function
Corona_M	PF01635.13	gi|408403692|ref|YP_006861675.1|	-	5.2	5.9	7.7	1.5	7.7	2.0	2.1	2	1	0	2	2	2	0	Coronavirus	M	matrix/glycoprotein
DUF4231	PF14015.1	gi|408403692|ref|YP_006861675.1|	-	9.1	6.3	9.2	3.3	7.7	0.8	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF4231)
PAC2	PF09754.4	gi|408403693|ref|YP_006861676.1|	-	8.2e-26	91.2	0.0	9.9e-26	90.9	0.0	1.0	1	0	0	1	1	1	1	PAC2	family
NAD_binding_2	PF03446.10	gi|408403694|ref|YP_006861677.1|	-	6.9e-40	136.5	1.4	1.1e-39	135.9	1.0	1.3	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
NAD_binding_11	PF14833.1	gi|408403694|ref|YP_006861677.1|	-	1.8e-25	89.3	0.2	3.1e-25	88.6	0.1	1.4	1	0	0	1	1	1	1	NAD-binding	of	NADP-dependent	3-hydroxyisobutyrate	dehydrogenase
F420_oxidored	PF03807.12	gi|408403694|ref|YP_006861677.1|	-	8e-10	39.0	0.0	2.6e-09	37.4	0.0	1.9	1	1	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
3HCDH_N	PF02737.13	gi|408403694|ref|YP_006861677.1|	-	5.3e-09	35.9	0.1	7.4e-06	25.7	0.1	2.2	1	1	1	2	2	2	2	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
2-Hacid_dh_C	PF02826.14	gi|408403694|ref|YP_006861677.1|	-	7.4e-06	25.2	0.0	1.2e-05	24.5	0.0	1.3	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Shikimate_DH	PF01488.15	gi|408403694|ref|YP_006861677.1|	-	0.00034	20.7	0.1	0.00094	19.2	0.0	1.8	1	1	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
ApbA	PF02558.11	gi|408403694|ref|YP_006861677.1|	-	0.0022	17.4	0.0	0.0043	16.5	0.0	1.5	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
Rossmann-like	PF10727.4	gi|408403694|ref|YP_006861677.1|	-	0.0031	17.2	0.1	0.0055	16.4	0.1	1.5	1	0	0	1	1	1	1	Rossmann-like	domain
NAD_Gly3P_dh_N	PF01210.18	gi|408403694|ref|YP_006861677.1|	-	0.0081	15.8	0.0	0.018	14.7	0.0	1.7	1	1	0	1	1	1	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
UDPG_MGDP_dh_N	PF03721.9	gi|408403694|ref|YP_006861677.1|	-	0.027	13.8	0.1	0.077	12.3	0.0	1.7	1	1	0	2	2	2	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
GFO_IDH_MocA	PF01408.17	gi|408403694|ref|YP_006861677.1|	-	0.035	14.6	0.0	0.1	13.1	0.0	1.8	2	0	0	2	2	2	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
NAD_binding_10	PF13460.1	gi|408403694|ref|YP_006861677.1|	-	0.088	12.8	0.1	0.24	11.4	0.0	1.8	1	1	1	2	2	2	0	NADH(P)-binding
Radical_SAM	PF04055.16	gi|408403695|ref|YP_006861678.1|	-	1.2e-07	32.0	0.3	1.9e-07	31.3	0.2	1.4	1	0	0	1	1	1	1	Radical	SAM	superfamily
Fer4_14	PF13394.1	gi|408403695|ref|YP_006861678.1|	-	0.0012	18.8	0.0	0.0034	17.4	0.0	1.7	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_12	PF13353.1	gi|408403695|ref|YP_006861678.1|	-	0.0079	16.3	0.2	0.016	15.3	0.1	1.7	1	1	0	1	1	1	1	4Fe-4S	single	cluster	domain
DUF1848	PF08902.6	gi|408403695|ref|YP_006861678.1|	-	0.052	13.0	1.0	0.18	11.2	0.4	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1848)
NUDIX	PF00293.23	gi|408403697|ref|YP_006861680.1|	-	8.8e-21	73.9	0.0	1e-20	73.7	0.0	1.1	1	0	0	1	1	1	1	NUDIX	domain
NUDIX_4	PF14815.1	gi|408403697|ref|YP_006861680.1|	-	0.0019	17.6	0.0	0.005	16.2	0.0	1.6	1	1	0	1	1	1	1	NUDIX	domain
OrfB_IS605	PF01385.14	gi|408403698|ref|YP_006861681.1|	-	1e-23	83.9	4.3	1.8e-23	83.1	3.0	1.3	1	0	0	1	1	1	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.6	gi|408403698|ref|YP_006861681.1|	-	1.6e-19	69.3	0.5	3e-19	68.4	0.3	1.5	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
HTH_OrfB_IS605	PF12323.3	gi|408403698|ref|YP_006861681.1|	-	3.4e-13	48.6	0.2	9.4e-13	47.2	0.1	1.8	1	0	0	1	1	1	1	Helix-turn-helix	domain
EH_Signature	PF15611.1	gi|408403698|ref|YP_006861681.1|	-	0.086	11.8	4.3	0.063	12.3	1.5	1.7	1	1	1	2	2	2	0	EH_Signature	domain
DZR	PF12773.2	gi|408403698|ref|YP_006861681.1|	-	0.12	12.2	0.3	0.28	11.0	0.2	1.5	1	0	0	1	1	1	0	Double	zinc	ribbon
Rpr2	PF04032.11	gi|408403698|ref|YP_006861681.1|	-	2.6	7.9	7.0	43	4.0	2.0	3.8	2	1	0	2	2	2	0	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
FeoC	PF09012.5	gi|408403699|ref|YP_006861682.1|	-	0.019	14.6	1.0	0.63	9.7	0.0	2.3	2	1	0	2	2	2	0	FeoC	like	transcriptional	regulator
Pox_F12L	PF03337.8	gi|408403699|ref|YP_006861682.1|	-	0.079	10.8	0.2	0.076	10.9	0.1	1.0	1	0	0	1	1	1	0	Poxvirus	F12L	protein
RC-P840_PscD	PF10657.4	gi|408403699|ref|YP_006861682.1|	-	0.09	12.6	0.0	0.1	12.4	0.0	1.2	1	0	0	1	1	1	0	Photosystem	P840	reaction	centre	protein	PscD
UPF0051	PF01458.12	gi|408403700|ref|YP_006861683.1|	-	4.2e-72	242.3	0.6	6.2e-72	241.7	0.4	1.3	1	0	0	1	1	1	1	Uncharacterized	protein	family	(UPF0051)
Pico_P1A	PF02226.11	gi|408403700|ref|YP_006861683.1|	-	0.0082	15.8	1.2	1.6	8.5	0.1	3.0	3	0	0	3	3	3	2	Picornavirus	coat	protein	(VP4)
UPF0051	PF01458.12	gi|408403701|ref|YP_006861684.1|	-	1.6e-60	204.4	0.2	2e-60	204.1	0.2	1.1	1	0	0	1	1	1	1	Uncharacterized	protein	family	(UPF0051)
Rieske	PF00355.21	gi|408403702|ref|YP_006861685.1|	-	5e-19	67.6	0.0	5.6e-19	67.5	0.0	1.0	1	0	0	1	1	1	1	Rieske	[2Fe-2S]	domain
Rieske_2	PF13806.1	gi|408403702|ref|YP_006861685.1|	-	4.1e-14	52.1	0.0	4.7e-14	51.9	0.0	1.0	1	0	0	1	1	1	1	Rieske-like	[2Fe-2S]	domain
Aminotran_5	PF00266.14	gi|408403703|ref|YP_006861686.1|	-	7.4e-155	515.2	0.7	8.4e-155	515.0	0.5	1.0	1	0	0	1	1	1	1	Aminotransferase	class-V
Beta_elim_lyase	PF01212.16	gi|408403703|ref|YP_006861686.1|	-	3.4e-08	32.9	0.1	7.7e-07	28.5	0.1	2.1	1	1	0	2	2	2	1	Beta-eliminating	lyase
Aminotran_1_2	PF00155.16	gi|408403703|ref|YP_006861686.1|	-	3.4e-06	26.2	0.2	5.2e-06	25.6	0.1	1.3	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
SelA	PF03841.8	gi|408403703|ref|YP_006861686.1|	-	0.00025	19.9	0.3	0.00068	18.4	0.1	1.6	1	1	0	1	1	1	1	L-seryl-tRNA	selenium	transferase
DegT_DnrJ_EryC1	PF01041.12	gi|408403703|ref|YP_006861686.1|	-	0.00027	20.1	0.1	0.00044	19.4	0.1	1.3	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
NifU_N	PF01592.11	gi|408403704|ref|YP_006861687.1|	-	3.8e-32	110.9	0.0	4.4e-32	110.7	0.0	1.0	1	0	0	1	1	1	1	NifU-like	N	terminal	domain
Lip_prot_lig_C	PF10437.4	gi|408403704|ref|YP_006861687.1|	-	0.075	12.7	0.0	0.11	12.1	0.0	1.3	1	0	0	1	1	1	0	Bacterial	lipoate	protein	ligase	C-terminus
GCC2_GCC3	PF07699.8	gi|408403705|ref|YP_006861688.1|	-	0.012	15.1	1.3	0.017	14.6	0.9	1.2	1	0	0	1	1	1	0	GCC2	and	GCC3
DZR	PF12773.2	gi|408403705|ref|YP_006861688.1|	-	0.045	13.5	1.1	0.073	12.9	0.7	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
DUF3647	PF12363.3	gi|408403705|ref|YP_006861688.1|	-	0.048	13.7	0.2	0.09	12.8	0.1	1.5	1	1	0	1	1	1	0	Phage	protein
zinc_ribbon_2	PF13240.1	gi|408403705|ref|YP_006861688.1|	-	0.12	11.9	0.5	0.12	11.9	0.3	1.6	2	0	0	2	2	2	0	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.7	gi|408403705|ref|YP_006861688.1|	-	0.59	9.4	4.1	0.24	10.7	1.0	1.8	2	0	0	2	2	2	0	TFIIB	zinc-binding
zf-ribbon_3	PF13248.1	gi|408403705|ref|YP_006861688.1|	-	0.79	9.0	6.0	4.7	6.5	4.2	2.0	1	1	0	1	1	1	0	zinc-ribbon	domain
Zn-ribbon_8	PF09723.5	gi|408403705|ref|YP_006861688.1|	-	2.7	8.0	5.1	17	5.4	3.7	2.0	1	1	1	2	2	2	0	Zinc	ribbon	domain
PAP2	PF01569.16	gi|408403706|ref|YP_006861689.1|	-	7.5e-21	74.1	2.8	7.5e-21	74.1	2.0	2.3	2	0	0	2	2	2	1	PAP2	superfamily
PAP2_C	PF14360.1	gi|408403706|ref|YP_006861689.1|	-	0.0025	18.0	0.3	0.0025	18.0	0.2	2.8	3	0	0	3	3	3	1	PAP2	superfamily	C-terminal
PAP2_3	PF14378.1	gi|408403706|ref|YP_006861689.1|	-	0.0051	16.3	2.9	0.0051	16.3	2.0	2.0	1	1	1	2	2	2	1	PAP2	superfamily
DUF1430	PF07242.6	gi|408403706|ref|YP_006861689.1|	-	0.031	14.3	9.0	1	9.4	0.1	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1430)
OppC_N	PF12911.2	gi|408403706|ref|YP_006861689.1|	-	0.15	11.4	0.2	0.15	11.4	0.1	2.6	3	0	0	3	3	3	0	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
Rab5ip	PF07019.7	gi|408403706|ref|YP_006861689.1|	-	3	8.0	9.4	4	7.6	0.4	3.0	3	1	1	4	4	4	0	Rab5-interacting	protein	(Rab5ip)
DUF1514	PF07438.6	gi|408403707|ref|YP_006861690.1|	-	0.49	10.3	2.6	0.65	9.9	1.8	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1514)
MttA_Hcf106	PF02416.11	gi|408403711|ref|YP_006861694.1|	-	2.8e-10	39.1	0.1	5.3e-10	38.2	0.1	1.5	1	0	0	1	1	1	1	mttA/Hcf106	family
ELFV_dehydrog	PF00208.16	gi|408403712|ref|YP_006861695.1|	-	6e-74	248.6	3.3	1.5e-73	247.4	2.3	1.6	2	0	0	2	2	2	1	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
ELFV_dehydrog_N	PF02812.13	gi|408403712|ref|YP_006861695.1|	-	5.9e-57	190.8	0.0	1.4e-56	189.6	0.0	1.6	2	0	0	2	2	2	1	Glu/Leu/Phe/Val	dehydrogenase,	dimerisation	domain
2-Hacid_dh_C	PF02826.14	gi|408403712|ref|YP_006861695.1|	-	0.085	12.0	0.3	0.16	11.1	0.2	1.4	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Fe-S_biosyn	PF01521.15	gi|408403713|ref|YP_006861696.1|	-	1.1e-24	86.4	0.0	1.3e-24	86.3	0.0	1.0	1	0	0	1	1	1	1	Iron-sulphur	cluster	biosynthesis
FKBP_C	PF00254.23	gi|408403714|ref|YP_006861697.1|	-	5.8e-14	51.8	0.0	1.4e-13	50.6	0.0	1.7	1	1	0	1	1	1	1	FKBP-type	peptidyl-prolyl	cis-trans	isomerase
Asp23	PF03780.8	gi|408403714|ref|YP_006861697.1|	-	0.066	13.4	0.0	0.73	10.1	0.0	2.2	2	0	0	2	2	2	0	Asp23	family
Tn7_Tnp_TnsA_C	PF08721.6	gi|408403714|ref|YP_006861697.1|	-	0.15	12.1	0.0	6.2	6.9	0.0	2.4	2	0	0	2	2	2	0	TnsA	endonuclease	C	terminal
Aminotran_5	PF00266.14	gi|408403715|ref|YP_006861698.1|	-	1.9e-36	125.5	0.0	2.4e-36	125.2	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class-V
Cys_Met_Meta_PP	PF01053.15	gi|408403715|ref|YP_006861698.1|	-	0.015	13.5	0.0	0.024	12.9	0.0	1.2	1	0	0	1	1	1	0	Cys/Met	metabolism	PLP-dependent	enzyme
HemolysinCabind	PF00353.14	gi|408403716|ref|YP_006861699.1|	-	3e-16	58.1	67.1	0.0001	22.3	2.4	10.5	8	1	5	13	13	13	11	Hemolysin-type	calcium-binding	repeat	(2	copies)
Peptidase_M24	PF00557.19	gi|408403717|ref|YP_006861700.1|	-	1e-53	182.0	0.1	1.3e-53	181.6	0.0	1.1	1	0	0	1	1	1	1	Metallopeptidase	family	M24
Creatinase_N	PF01321.13	gi|408403717|ref|YP_006861700.1|	-	1.6e-08	35.0	0.0	4.4e-08	33.6	0.0	1.7	2	0	0	2	2	2	1	Creatinase/Prolidase	N-terminal	domain
DFP	PF04127.10	gi|408403719|ref|YP_006861702.1|	-	4.6e-56	189.3	5.5	3.8e-55	186.3	1.9	2.2	2	0	0	2	2	2	1	DNA	/	pantothenate	metabolism	flavoprotein
Flavoprotein	PF02441.14	gi|408403719|ref|YP_006861702.1|	-	2.1e-27	95.3	2.6	3.1e-27	94.7	0.8	2.0	2	0	0	2	2	2	1	Flavoprotein
YjeF_N	PF03853.10	gi|408403719|ref|YP_006861702.1|	-	0.0015	18.2	0.2	1.2	8.7	0.0	2.4	2	0	0	2	2	2	2	YjeF-related	protein	N-terminus
DUF3798	PF12683.2	gi|408403719|ref|YP_006861702.1|	-	0.13	11.3	2.6	0.91	8.5	0.0	2.6	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF3798)
Pantoate_transf	PF02548.10	gi|408403720|ref|YP_006861703.1|	-	4.3e-108	360.3	2.1	4.9e-108	360.1	1.5	1.0	1	0	0	1	1	1	1	Ketopantoate	hydroxymethyltransferase
PEP_mutase	PF13714.1	gi|408403720|ref|YP_006861703.1|	-	0.00049	19.3	1.1	0.00091	18.5	0.2	1.7	2	0	0	2	2	2	1	Phosphoenolpyruvate	phosphomutase
AFOR_N	PF02730.10	gi|408403720|ref|YP_006861703.1|	-	0.023	14.0	0.2	0.043	13.1	0.1	1.5	1	1	0	1	1	1	0	Aldehyde	ferredoxin	oxidoreductase,	N-terminal	domain
DUF137	PF02006.11	gi|408403721|ref|YP_006861704.1|	-	1.6e-76	255.6	0.5	1.9e-76	255.3	0.4	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF137
Phage_GPD	PF05954.6	gi|408403721|ref|YP_006861704.1|	-	0.084	12.0	0.0	0.13	11.4	0.0	1.3	1	0	0	1	1	1	0	Phage	late	control	gene	D	protein	(GPD)
TPP_enzyme_M	PF00205.17	gi|408403721|ref|YP_006861704.1|	-	0.18	11.5	3.0	0.41	10.4	0.4	2.2	2	1	0	2	2	2	0	Thiamine	pyrophosphate	enzyme,	central	domain
GHMP_kinases_N	PF00288.21	gi|408403722|ref|YP_006861705.1|	-	7.6e-10	38.7	1.8	1.8e-09	37.5	1.2	1.7	1	0	0	1	1	1	1	GHMP	kinases	N	terminal	domain
PhoU	PF01895.14	gi|408403723|ref|YP_006861706.1|	-	8.7e-15	54.9	9.2	1.5e-10	41.3	3.1	2.6	2	0	0	2	2	2	2	PhoU	domain
Antitoxin-MazE	PF04014.13	gi|408403723|ref|YP_006861706.1|	-	4.7e-05	22.9	0.1	0.00013	21.5	0.0	1.8	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE
Patatin	PF01734.17	gi|408403724|ref|YP_006861707.1|	-	3.1e-15	56.6	0.0	3.4e-15	56.5	0.0	1.0	1	0	0	1	1	1	1	Patatin-like	phospholipase
ACT	PF01842.20	gi|408403724|ref|YP_006861707.1|	-	0.018	14.5	0.2	0.03	13.7	0.1	1.5	1	1	0	1	1	1	0	ACT	domain
DDE_Tnp_1	PF01609.16	gi|408403725|ref|YP_006861708.1|	-	0.0042	16.6	0.2	0.0078	15.7	0.1	1.5	1	1	0	1	1	1	1	Transposase	DDE	domain
DUF1815	PF08844.5	gi|408403725|ref|YP_006861708.1|	-	0.018	14.6	0.2	0.049	13.2	0.0	1.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1815)
DUF3734	PF12536.3	gi|408403726|ref|YP_006861709.1|	-	2.8e-05	24.2	0.3	9e-05	22.5	0.2	1.9	1	1	0	1	1	1	1	Patatin	phospholipase
DUF3461	PF11944.3	gi|408403726|ref|YP_006861709.1|	-	0.0029	17.4	2.0	0.0052	16.6	1.4	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3461)
GHMP_kinases_N	PF00288.21	gi|408403727|ref|YP_006861710.1|	-	2.3e-18	66.0	0.3	2.3e-18	66.0	0.2	2.3	3	0	0	3	3	3	1	GHMP	kinases	N	terminal	domain
GHMP_kinases_C	PF08544.8	gi|408403727|ref|YP_006861710.1|	-	1.1e-15	57.5	0.6	2.6e-15	56.3	0.4	1.7	1	0	0	1	1	1	1	GHMP	kinases	C	terminal
I_LWEQ	PF01608.12	gi|408403727|ref|YP_006861710.1|	-	0.029	14.3	0.2	0.075	12.9	0.0	1.7	2	0	0	2	2	2	0	I/LWEQ	domain
Memo	PF01875.12	gi|408403728|ref|YP_006861711.1|	-	1.2e-77	260.4	0.0	1.4e-77	260.2	0.0	1.0	1	0	0	1	1	1	1	Memo-like	protein
Ribosomal_S2	PF00318.15	gi|408403729|ref|YP_006861712.1|	-	1.9e-34	118.7	0.0	1.9e-17	63.2	0.0	2.1	1	1	1	2	2	2	2	Ribosomal	protein	S2
Peripla_BP_4	PF13407.1	gi|408403729|ref|YP_006861712.1|	-	0.081	12.2	1.2	0.14	11.5	0.8	1.3	1	0	0	1	1	1	0	Periplasmic	binding	protein	domain
PD40	PF07676.7	gi|408403730|ref|YP_006861713.1|	-	2e-06	27.3	0.3	0.025	14.2	0.0	3.4	4	0	0	4	4	4	2	WD40-like	Beta	Propeller	Repeat
DPPIV_N	PF00930.16	gi|408403730|ref|YP_006861713.1|	-	0.00027	19.6	0.0	0.0006	18.5	0.0	1.5	1	0	0	1	1	1	1	Dipeptidyl	peptidase	IV	(DPP	IV)	N-terminal	region
Gmad1	PF10647.4	gi|408403730|ref|YP_006861713.1|	-	0.00084	18.8	0.0	0.002	17.5	0.0	1.6	1	1	0	1	1	1	1	Lipoprotein	LpqB	beta-propeller	domain
eIF2A	PF08662.6	gi|408403730|ref|YP_006861713.1|	-	0.0025	17.5	0.4	0.15	11.7	0.0	2.4	1	1	1	2	2	2	1	Eukaryotic	translation	initiation	factor	eIF2A
SGL	PF08450.7	gi|408403730|ref|YP_006861713.1|	-	0.0058	16.0	0.0	0.016	14.6	0.0	1.6	2	0	0	2	2	2	1	SMP-30/Gluconolaconase/LRE-like	region
Glyco_hydro_80	PF13647.1	gi|408403730|ref|YP_006861713.1|	-	0.015	14.6	0.2	0.021	14.0	0.1	1.2	1	0	0	1	1	1	0	Glycosyl	hydrolase	family	80	of	chitosanase	A
Peptidase_S9_N	PF02897.10	gi|408403730|ref|YP_006861713.1|	-	0.042	12.4	0.0	0.067	11.7	0.0	1.3	1	0	0	1	1	1	0	Prolyl	oligopeptidase,	N-terminal	beta-propeller	domain
Enolase_C	PF00113.17	gi|408403734|ref|YP_006861717.1|	-	1e-58	198.6	0.1	1.3e-58	198.2	0.0	1.1	1	0	0	1	1	1	1	Enolase,	C-terminal	TIM	barrel	domain
Enolase_N	PF03952.11	gi|408403734|ref|YP_006861717.1|	-	1.4e-28	99.4	0.1	2.8e-28	98.4	0.0	1.6	1	0	0	1	1	1	1	Enolase,	N-terminal	domain
MR_MLE	PF01188.16	gi|408403734|ref|YP_006861717.1|	-	0.0013	19.1	0.0	0.032	14.7	0.0	2.5	2	1	0	2	2	2	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	C-terminal	domain
MR_MLE_C	PF13378.1	gi|408403734|ref|YP_006861717.1|	-	0.013	15.4	0.0	0.026	14.5	0.0	1.5	1	0	0	1	1	1	0	Enolase	C-terminal	domain-like
5_3_exonuc_N	PF02739.11	gi|408403734|ref|YP_006861717.1|	-	0.044	13.1	0.1	0.1	11.9	0.0	1.6	2	0	0	2	2	2	0	5'-3'	exonuclease,	N-terminal	resolvase-like	domain
RNA_pol_N	PF01194.12	gi|408403735|ref|YP_006861718.1|	-	3.6e-28	97.3	1.0	4.7e-28	96.9	0.7	1.2	1	0	0	1	1	1	1	RNA	polymerases	N	/	8	kDa	subunit
ASFV_360	PF01671.11	gi|408403736|ref|YP_006861719.1|	-	0.047	13.0	0.4	0.049	13.0	0.3	1.0	1	0	0	1	1	1	0	African	swine	fever	virus	multigene	family	360	protein
TetR_C_8	PF14278.1	gi|408403737|ref|YP_006861720.1|	-	0.021	15.1	0.5	0.021	15.1	0.4	2.6	3	1	0	3	3	3	0	Transcriptional	regulator	C-terminal	region
RHH_1	PF01402.16	gi|408403737|ref|YP_006861720.1|	-	0.022	14.6	0.0	0.05	13.5	0.0	1.7	1	0	0	1	1	1	0	Ribbon-helix-helix	protein,	copG	family
Cupredoxin_1	PF13473.1	gi|408403738|ref|YP_006861721.1|	-	8.4e-06	25.6	0.0	1.3e-05	25.0	0.0	1.4	1	0	0	1	1	1	1	Cupredoxin-like	domain
Copper-bind	PF00127.15	gi|408403738|ref|YP_006861721.1|	-	0.00038	20.6	0.0	0.00068	19.8	0.0	1.4	1	1	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
FeoB_C	PF07664.7	gi|408403738|ref|YP_006861721.1|	-	0.022	14.1	0.2	0.039	13.3	0.1	1.3	1	0	0	1	1	1	0	Ferrous	iron	transport	protein	B	C	terminus
ETRAMP	PF09716.5	gi|408403738|ref|YP_006861721.1|	-	0.023	14.6	0.1	0.038	13.9	0.1	1.4	1	0	0	1	1	1	0	Malarial	early	transcribed	membrane	protein	(ETRAMP)
TrmB	PF01978.14	gi|408403739|ref|YP_006861722.1|	-	0.01	15.5	0.1	0.015	15.0	0.0	1.3	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
LexA_DNA_bind	PF01726.11	gi|408403739|ref|YP_006861722.1|	-	0.017	14.6	0.0	0.024	14.1	0.0	1.2	1	0	0	1	1	1	0	LexA	DNA	binding	domain
DUF4423	PF14394.1	gi|408403739|ref|YP_006861722.1|	-	0.077	12.5	0.0	0.1	12.1	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
DDE_Tnp_1	PF01609.16	gi|408403740|ref|YP_006861723.1|	-	0.0042	16.6	0.2	0.0078	15.7	0.1	1.5	1	1	0	1	1	1	1	Transposase	DDE	domain
DUF1815	PF08844.5	gi|408403740|ref|YP_006861723.1|	-	0.018	14.6	0.2	0.049	13.2	0.0	1.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1815)
DUF131	PF01998.12	gi|408403741|ref|YP_006861724.1|	-	0.013	14.8	0.4	0.013	14.8	0.3	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	DUF131
Copper-bind	PF00127.15	gi|408403742|ref|YP_006861725.1|	-	2.1e-13	50.2	0.1	3e-13	49.8	0.1	1.2	1	0	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
Cupredoxin_1	PF13473.1	gi|408403742|ref|YP_006861725.1|	-	2.4e-06	27.3	0.0	4.4e-06	26.5	0.0	1.4	1	0	0	1	1	1	1	Cupredoxin-like	domain
HTH_38	PF13936.1	gi|408403746|ref|YP_006861729.1|	-	0.0016	17.9	0.2	0.0058	16.1	0.1	2.0	2	0	0	2	2	2	1	Helix-turn-helix	domain
Ribosomal_L27	PF01016.14	gi|408403746|ref|YP_006861729.1|	-	0.15	11.8	0.4	0.31	10.8	0.1	1.6	2	0	0	2	2	2	0	Ribosomal	L27	protein
Antitoxin-MazE	PF04014.13	gi|408403747|ref|YP_006861730.1|	-	0.0082	15.8	0.2	0.012	15.3	0.1	1.4	2	0	0	2	2	2	1	Antidote-toxin	recognition	MazE
NTP_transf_5	PF14907.1	gi|408403749|ref|YP_006861732.1|	-	0.00033	20.0	0.1	0.0019	17.6	0.1	1.9	1	1	0	1	1	1	1	Uncharacterised	nucleotidyltransferase
LEA_2	PF03168.8	gi|408403750|ref|YP_006861733.1|	-	3.6e-08	33.7	0.0	4.8e-08	33.2	0.0	1.3	1	0	0	1	1	1	1	Late	embryogenesis	abundant	protein
BNR_2	PF13088.1	gi|408403751|ref|YP_006861734.1|	-	8.4e-05	21.9	0.5	0.0071	15.6	0.2	2.4	2	1	0	2	2	2	2	BNR	repeat-like	domain
BNR	PF02012.15	gi|408403751|ref|YP_006861734.1|	-	0.0056	16.3	5.3	5.9	7.1	0.0	5.4	5	0	0	5	5	5	1	BNR/Asp-box	repeat
Kelch_6	PF13964.1	gi|408403751|ref|YP_006861734.1|	-	0.042	14.0	5.3	5.4	7.3	0.1	4.6	5	0	0	5	5	5	0	Kelch	motif
BOF	PF04076.8	gi|408403752|ref|YP_006861735.1|	-	0.034	13.9	0.1	0.042	13.6	0.1	1.2	1	0	0	1	1	1	0	Bacterial	OB	fold	(BOF)	protein
Rubrerythrin	PF02915.12	gi|408403753|ref|YP_006861736.1|	-	0.00032	21.0	0.6	0.0018	18.5	0.4	2.0	1	1	0	1	1	1	1	Rubrerythrin
Ferritin	PF00210.19	gi|408403753|ref|YP_006861736.1|	-	0.0051	16.5	2.6	0.016	14.9	1.8	1.9	1	1	0	1	1	1	1	Ferritin-like	domain
DUF2383	PF09537.5	gi|408403753|ref|YP_006861736.1|	-	0.0065	16.7	0.3	0.14	12.3	0.1	2.1	1	1	1	2	2	2	1	Domain	of	unknown	function	(DUF2383)
DUF892	PF05974.7	gi|408403753|ref|YP_006861736.1|	-	0.051	13.3	1.6	2.4	7.9	0.1	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF892)
Kinase-PPPase	PF03618.9	gi|408403753|ref|YP_006861736.1|	-	0.056	12.9	0.1	0.069	12.6	0.1	1.1	1	0	0	1	1	1	0	Kinase/pyrophosphorylase
DUF2951	PF11166.3	gi|408403753|ref|YP_006861736.1|	-	0.1	12.4	0.1	0.23	11.3	0.0	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2951)
MgtE_N	PF03448.12	gi|408403753|ref|YP_006861736.1|	-	1.6	9.0	4.7	6.3	7.1	0.3	2.3	2	0	0	2	2	2	0	MgtE	intracellular	N	domain
HTH_45	PF14947.1	gi|408403754|ref|YP_006861737.1|	-	2.1e-17	62.6	0.0	2.7e-17	62.3	0.0	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
AhpC-TSA	PF00578.16	gi|408403755|ref|YP_006861738.1|	-	4.4e-42	142.6	0.0	5.1e-42	142.4	0.0	1.0	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.5	gi|408403755|ref|YP_006861738.1|	-	4.5e-28	97.6	0.0	5.3e-28	97.3	0.0	1.0	1	0	0	1	1	1	1	Redoxin
AhpC-TSA_2	PF13911.1	gi|408403755|ref|YP_006861738.1|	-	3e-08	33.5	0.0	6.3e-08	32.5	0.0	1.5	1	1	0	1	1	1	1	AhpC/TSA	antioxidant	enzyme
Thioredoxin_8	PF13905.1	gi|408403755|ref|YP_006861738.1|	-	2.1e-07	30.9	0.0	3.1e-07	30.4	0.0	1.3	1	0	0	1	1	1	1	Thioredoxin-like
DUF899	PF05988.7	gi|408403755|ref|YP_006861738.1|	-	2.1e-07	30.6	0.0	2.6e-07	30.2	0.0	1.1	1	0	0	1	1	1	1	Bacterial	protein	of	unknown	function	(DUF899)
SCO1-SenC	PF02630.9	gi|408403755|ref|YP_006861738.1|	-	0.00064	19.3	0.3	0.0072	15.9	0.2	2.0	1	1	0	1	1	1	1	SCO1/SenC
GSHPx	PF00255.14	gi|408403755|ref|YP_006861738.1|	-	0.0029	16.9	0.0	0.0051	16.1	0.0	1.5	1	0	0	1	1	1	1	Glutathione	peroxidase
AhpC-TSA	PF00578.16	gi|408403757|ref|YP_006861740.1|	-	4e-10	39.4	0.0	7.6e-10	38.5	0.0	1.5	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.5	gi|408403757|ref|YP_006861740.1|	-	2.5e-08	33.6	0.0	4e-08	32.9	0.0	1.2	1	0	0	1	1	1	1	Redoxin
Thioredoxin_8	PF13905.1	gi|408403757|ref|YP_006861740.1|	-	4.2e-07	29.9	0.2	8.2e-07	29.0	0.1	1.5	1	0	0	1	1	1	1	Thioredoxin-like
Thioredoxin_2	PF13098.1	gi|408403757|ref|YP_006861740.1|	-	0.012	15.7	0.0	0.022	14.9	0.0	1.4	1	0	0	1	1	1	0	Thioredoxin-like	domain
Lysozyme_like	PF13702.1	gi|408403757|ref|YP_006861740.1|	-	0.065	12.7	0.2	0.11	11.9	0.2	1.3	1	0	0	1	1	1	0	Lysozyme-like
adh_short	PF00106.20	gi|408403758|ref|YP_006861741.1|	-	3.2e-40	137.7	0.1	4.8e-40	137.1	0.1	1.3	1	0	0	1	1	1	1	short	chain	dehydrogenase
adh_short_C2	PF13561.1	gi|408403758|ref|YP_006861741.1|	-	1.1e-18	67.9	0.1	1.4e-18	67.6	0.0	1.1	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
KR	PF08659.5	gi|408403758|ref|YP_006861741.1|	-	5.6e-16	58.7	0.1	8.3e-16	58.1	0.1	1.3	1	0	0	1	1	1	1	KR	domain
3HCDH_N	PF02737.13	gi|408403758|ref|YP_006861741.1|	-	0.00097	18.8	0.5	0.041	13.5	0.2	2.2	2	0	0	2	2	2	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
UDPG_MGDP_dh_N	PF03721.9	gi|408403758|ref|YP_006861741.1|	-	0.036	13.4	0.3	0.23	10.8	0.3	1.9	2	0	0	2	2	2	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
NAD_binding_10	PF13460.1	gi|408403758|ref|YP_006861741.1|	-	0.075	13.0	0.3	0.18	11.7	0.2	1.7	2	1	0	2	2	2	0	NADH(P)-binding
PD40	PF07676.7	gi|408403759|ref|YP_006861742.1|	-	0.0075	15.9	0.3	0.015	14.9	0.0	1.8	2	1	0	2	2	2	1	WD40-like	Beta	Propeller	Repeat
DPPIV_N	PF00930.16	gi|408403759|ref|YP_006861742.1|	-	0.052	12.1	0.0	0.067	11.7	0.0	1.2	1	0	0	1	1	1	0	Dipeptidyl	peptidase	IV	(DPP	IV)	N-terminal	region
Ldr_toxin	PF13940.1	gi|408403759|ref|YP_006861742.1|	-	0.37	10.6	2.8	0.61	9.9	1.9	1.4	1	0	0	1	1	1	0	Toxin	Ldr,	type	I	toxin-antitoxin	system
DPPIV_N	PF00930.16	gi|408403760|ref|YP_006861743.1|	-	3e-05	22.8	0.0	3.3e-05	22.6	0.0	1.1	1	0	0	1	1	1	1	Dipeptidyl	peptidase	IV	(DPP	IV)	N-terminal	region
PD40	PF07676.7	gi|408403760|ref|YP_006861743.1|	-	0.00012	21.6	0.4	0.0028	17.2	0.0	2.3	2	0	0	2	2	2	1	WD40-like	Beta	Propeller	Repeat
Pectate_lyase22	PF14583.1	gi|408403760|ref|YP_006861743.1|	-	0.072	11.5	0.1	0.19	10.1	0.0	1.5	1	1	1	2	2	2	0	Oligogalacturonate	lyase
DPPIV_N	PF00930.16	gi|408403761|ref|YP_006861744.1|	-	0.0052	15.4	0.1	0.03	12.9	0.0	1.8	1	1	1	2	2	2	1	Dipeptidyl	peptidase	IV	(DPP	IV)	N-terminal	region
Cupin_2	PF07883.6	gi|408403762|ref|YP_006861745.1|	-	2.2e-07	30.2	1.2	4.4e-06	26.0	0.9	2.1	1	1	0	1	1	1	1	Cupin	domain
Cupin_1	PF00190.17	gi|408403762|ref|YP_006861745.1|	-	2.3e-05	23.8	0.0	3e-05	23.4	0.0	1.2	1	0	0	1	1	1	1	Cupin
Auxin_BP	PF02041.11	gi|408403762|ref|YP_006861745.1|	-	6.3e-05	22.4	0.0	7.5e-05	22.2	0.0	1.2	1	0	0	1	1	1	1	Auxin	binding	protein
PmbA_TldD	PF01523.11	gi|408403763|ref|YP_006861746.1|	-	2.4e-68	230.5	4.6	3.6e-68	229.9	3.2	1.3	1	0	0	1	1	1	1	Putative	modulator	of	DNA	gyrase
PmbA_TldD	PF01523.11	gi|408403764|ref|YP_006861747.1|	-	4.8e-65	219.7	3.4	6.3e-65	219.3	2.4	1.2	1	0	0	1	1	1	1	Putative	modulator	of	DNA	gyrase
FAD_oxidored	PF12831.2	gi|408403765|ref|YP_006861748.1|	-	6e-20	71.7	0.0	8.6e-20	71.2	0.0	1.3	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
DAO	PF01266.19	gi|408403765|ref|YP_006861748.1|	-	5.5e-13	48.5	2.1	1.1e-08	34.3	1.0	2.2	1	1	1	2	2	2	2	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.19	gi|408403765|ref|YP_006861748.1|	-	5.6e-11	41.9	1.1	1.1e-09	37.6	0.2	2.1	2	0	0	2	2	2	1	FAD	binding	domain
Lycopene_cycl	PF05834.7	gi|408403765|ref|YP_006861748.1|	-	1.1e-09	37.7	0.0	2.1e-09	36.8	0.0	1.6	1	1	0	1	1	1	1	Lycopene	cyclase	protein
FAD_binding_3	PF01494.14	gi|408403765|ref|YP_006861748.1|	-	1.5e-09	37.4	0.3	3.1e-08	33.0	0.2	2.1	1	1	0	1	1	1	1	FAD	binding	domain
Thi4	PF01946.12	gi|408403765|ref|YP_006861748.1|	-	3.4e-09	36.1	0.8	9.3e-07	28.1	0.1	2.3	2	0	0	2	2	2	2	Thi4	family
HI0933_like	PF03486.9	gi|408403765|ref|YP_006861748.1|	-	5e-09	35.1	1.7	9.6e-09	34.1	0.2	1.9	2	0	0	2	2	2	1	HI0933-like	protein
NAD_binding_8	PF13450.1	gi|408403765|ref|YP_006861748.1|	-	8.5e-09	35.3	0.0	2e-08	34.1	0.0	1.6	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Trp_halogenase	PF04820.9	gi|408403765|ref|YP_006861748.1|	-	2e-08	33.3	0.4	0.0016	17.1	0.0	2.5	1	1	1	2	2	2	2	Tryptophan	halogenase
Pyr_redox_2	PF07992.9	gi|408403765|ref|YP_006861748.1|	-	4.8e-08	33.1	0.6	9.6e-08	32.1	0.4	1.6	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.17	gi|408403765|ref|YP_006861748.1|	-	4.2e-07	29.1	1.4	5.7e-07	28.7	0.4	1.6	2	0	0	2	2	2	1	Glucose	inhibited	division	protein	A
Pyr_redox_3	PF13738.1	gi|408403765|ref|YP_006861748.1|	-	1.7e-05	24.9	0.1	3.2e-05	24.1	0.1	1.5	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.22	gi|408403765|ref|YP_006861748.1|	-	0.0005	20.4	0.0	0.0014	19.0	0.0	1.8	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
3HCDH_N	PF02737.13	gi|408403765|ref|YP_006861748.1|	-	0.00092	18.9	0.5	0.0018	17.9	0.0	1.7	2	0	0	2	2	2	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
AlaDh_PNT_C	PF01262.16	gi|408403765|ref|YP_006861748.1|	-	0.0026	17.3	0.0	0.0043	16.6	0.0	1.3	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
NAD_binding_7	PF13241.1	gi|408403765|ref|YP_006861748.1|	-	0.01	16.0	0.0	0.029	14.5	0.0	1.7	2	0	0	2	2	2	0	Putative	NAD(P)-binding
TrkA_N	PF02254.13	gi|408403765|ref|YP_006861748.1|	-	0.04	13.9	0.0	0.096	12.6	0.0	1.6	1	0	0	1	1	1	0	TrkA-N	domain
NAD_Gly3P_dh_N	PF01210.18	gi|408403765|ref|YP_006861748.1|	-	0.1	12.3	0.2	0.18	11.5	0.2	1.3	1	0	0	1	1	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
NAD_binding_9	PF13454.1	gi|408403765|ref|YP_006861748.1|	-	0.11	12.3	0.1	0.37	10.5	0.0	1.8	2	0	0	2	2	2	0	FAD-NAD(P)-binding
Oxidored_q4	PF00507.14	gi|408403766|ref|YP_006861749.1|	-	3.2e-14	52.5	1.8	4e-14	52.2	1.3	1.1	1	0	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase,	chain	3
DUF2244	PF10003.4	gi|408403766|ref|YP_006861749.1|	-	9.6	5.5	12.7	0.82	9.0	5.2	2.0	2	1	0	2	2	2	0	Integral	membrane	protein	(DUF2244)
Oxidored_q6	PF01058.17	gi|408403767|ref|YP_006861750.1|	-	1.4e-24	86.1	0.1	1.9e-24	85.7	0.1	1.2	1	0	0	1	1	1	1	NADH	ubiquinone	oxidoreductase,	20	Kd	subunit
Complex1_30kDa	PF00329.14	gi|408403768|ref|YP_006861751.1|	-	2e-29	101.8	0.0	2.7e-29	101.4	0.0	1.2	1	0	0	1	1	1	1	Respiratory-chain	NADH	dehydrogenase,	30	Kd	subunit
Complex1_49kDa	PF00346.14	gi|408403769|ref|YP_006861752.1|	-	3e-63	213.3	0.0	4.3e-49	166.9	0.0	2.1	1	1	1	2	2	2	2	Respiratory-chain	NADH	dehydrogenase,	49	Kd	subunit
NADHdh	PF00146.16	gi|408403770|ref|YP_006861753.1|	-	5.4e-77	258.9	15.0	5.4e-77	258.9	10.4	1.4	1	1	0	1	1	1	1	NADH	dehydrogenase
Fer4	PF00037.22	gi|408403771|ref|YP_006861754.1|	-	3.2e-13	48.6	11.0	2.7e-09	36.2	1.2	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.2	gi|408403771|ref|YP_006861754.1|	-	5.4e-10	39.4	8.1	9.4e-10	38.7	5.6	1.4	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|408403771|ref|YP_006861754.1|	-	1.3e-09	37.7	5.2	2.4e-09	36.8	3.6	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_2	PF12797.2	gi|408403771|ref|YP_006861754.1|	-	2.7e-08	33.2	11.9	6.8e-05	22.5	1.7	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.1	gi|408403771|ref|YP_006861754.1|	-	3e-08	33.3	20.4	1.6e-06	27.9	6.9	1.8	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.2	gi|408403771|ref|YP_006861754.1|	-	1.4e-07	31.0	12.2	5.1e-06	26.1	1.2	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_9	PF13187.1	gi|408403771|ref|YP_006861754.1|	-	7.1e-07	29.4	9.2	4.9e-06	26.7	7.0	1.9	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_4	PF12800.2	gi|408403771|ref|YP_006861754.1|	-	1.1e-06	28.4	8.5	0.0025	18.0	0.8	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_8	PF13183.1	gi|408403771|ref|YP_006861754.1|	-	1.4e-06	28.2	16.1	6.5e-05	22.8	5.7	1.8	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.1	gi|408403771|ref|YP_006861754.1|	-	1.1e-05	26.0	8.0	3.2e-05	24.5	5.8	1.6	1	1	0	1	1	1	1	4Fe-4S	double	cluster	binding	domain
Fer4_15	PF13459.1	gi|408403771|ref|YP_006861754.1|	-	4.9e-05	23.8	3.8	0.063	13.8	0.1	2.3	2	0	0	2	2	2	2	4Fe-4S	single	cluster	domain
Fer4_17	PF13534.1	gi|408403771|ref|YP_006861754.1|	-	5e-05	23.5	7.9	0.0073	16.6	0.2	2.3	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_3	PF12798.2	gi|408403771|ref|YP_006861754.1|	-	0.0057	17.1	4.0	0.0057	17.1	2.8	2.3	2	0	0	2	2	2	1	4Fe-4S	binding	domain
Fer4_18	PF13746.1	gi|408403771|ref|YP_006861754.1|	-	0.0065	16.8	12.4	0.011	16.2	0.9	2.3	1	1	1	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_13	PF13370.1	gi|408403771|ref|YP_006861754.1|	-	0.014	15.8	8.9	0.11	12.9	0.1	2.3	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain
Oxidored_q3	PF00499.15	gi|408403772|ref|YP_006861755.1|	-	1.5e-18	66.9	11.7	1.9e-18	66.6	8.1	1.1	1	0	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	6
DUF4040	PF13244.1	gi|408403772|ref|YP_006861755.1|	-	0.0037	17.2	15.6	0.0037	17.2	10.8	2.2	3	0	0	3	3	3	1	Domain	of	unknown	function	(DUF4040)
EpsG	PF14897.1	gi|408403772|ref|YP_006861755.1|	-	0.031	13.1	2.5	0.044	12.7	1.7	1.2	1	0	0	1	1	1	0	EpsG	family
DUF4239	PF14023.1	gi|408403772|ref|YP_006861755.1|	-	0.27	10.5	6.9	1.4	8.2	1.4	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF4239)
Oxidored_q2	PF00420.19	gi|408403773|ref|YP_006861756.1|	-	2e-22	78.6	3.6	2.2e-22	78.4	2.5	1.0	1	0	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	4L
DUF3096	PF11295.3	gi|408403773|ref|YP_006861756.1|	-	0.03	13.8	2.1	0.03	13.8	1.4	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3096)
Cytochrom_B_N	PF00033.14	gi|408403773|ref|YP_006861756.1|	-	0.048	13.0	2.2	1	8.6	0.2	1.9	1	1	1	2	2	2	0	Cytochrome	b(N-terminal)/b6/petB
E1-E2_ATPase	PF00122.15	gi|408403773|ref|YP_006861756.1|	-	0.41	9.6	3.0	0.55	9.2	2.1	1.2	1	0	0	1	1	1	0	E1-E2	ATPase
DUF4383	PF14325.1	gi|408403773|ref|YP_006861756.1|	-	0.41	10.6	7.5	0.19	11.7	1.4	2.0	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4383)
YiaAB	PF05360.9	gi|408403773|ref|YP_006861756.1|	-	0.77	9.3	4.5	2.4	7.7	0.2	2.3	2	0	0	2	2	2	0	yiaA/B	two	helix	domain
Oxidored_q1	PF00361.15	gi|408403774|ref|YP_006861757.1|	-	9.4e-64	215.2	24.5	9.4e-64	215.2	17.0	2.7	3	0	0	3	3	3	1	NADH-Ubiquinone/plastoquinone	(complex	I),	various	chains
Oxidored_q1_N	PF00662.15	gi|408403774|ref|YP_006861757.1|	-	0.12	12.0	0.0	0.12	12.0	0.0	2.7	3	0	0	3	3	3	0	NADH-Ubiquinone	oxidoreductase	(complex	I),	chain	5	N-terminus
DUF1515	PF07439.6	gi|408403774|ref|YP_006861757.1|	-	3	7.6	4.2	0.88	9.4	0.6	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1515)
Oxidored_q1	PF00361.15	gi|408403775|ref|YP_006861758.1|	-	7.7e-60	202.4	29.5	3.4e-55	187.2	13.6	3.3	3	0	0	3	3	3	2	NADH-Ubiquinone/plastoquinone	(complex	I),	various	chains
Oxidored_q1_N	PF00662.15	gi|408403775|ref|YP_006861758.1|	-	6.4e-10	38.4	1.3	3.2e-09	36.1	0.9	2.2	1	0	0	1	1	1	1	NADH-Ubiquinone	oxidoreductase	(complex	I),	chain	5	N-terminus
Oxidored_q1	PF00361.15	gi|408403776|ref|YP_006861759.1|	-	1.3e-59	201.7	15.1	1.3e-59	201.7	10.4	2.5	3	0	0	3	3	3	1	NADH-Ubiquinone/plastoquinone	(complex	I),	various	chains
Bac_luciferase	PF00296.15	gi|408403776|ref|YP_006861759.1|	-	0.057	12.5	0.1	0.11	11.6	0.1	1.3	1	0	0	1	1	1	0	Luciferase-like	monooxygenase
polyprenyl_synt	PF00348.12	gi|408403777|ref|YP_006861760.1|	-	7.9e-45	152.7	0.1	9.9e-45	152.4	0.0	1.2	1	0	0	1	1	1	1	Polyprenyl	synthetase
TENA_THI-4	PF03070.11	gi|408403778|ref|YP_006861761.1|	-	7.1e-16	58.5	1.0	8.9e-16	58.2	0.7	1.1	1	0	0	1	1	1	1	TENA/THI-4/PQQC	family
Haem_oxygenas_2	PF14518.1	gi|408403778|ref|YP_006861761.1|	-	2.7e-12	46.7	0.1	9.5e-10	38.5	0.0	2.3	1	1	1	2	2	2	2	Iron-containing	redox	enzyme
TFIID_30kDa	PF03540.8	gi|408403778|ref|YP_006861761.1|	-	0.13	12.1	0.1	12	5.7	0.0	2.4	2	0	0	2	2	2	0	Transcription	initiation	factor	TFIID	23-30kDa	subunit
Endonuc-FokI_C	PF09254.6	gi|408403779|ref|YP_006861762.1|	-	0.086	11.9	0.5	0.12	11.4	0.3	1.3	1	0	0	1	1	1	0	Restriction	endonuclease	FokI,	C	terminal
DNA_pol_B	PF00136.16	gi|408403780|ref|YP_006861763.1|	-	1.6e-07	30.5	0.2	0.0001	21.2	0.2	2.1	2	0	0	2	2	2	2	DNA	polymerase	family	B
HTH_45	PF14947.1	gi|408403782|ref|YP_006861765.1|	-	8.6e-07	28.6	0.0	2.1e-05	24.2	0.0	2.3	1	1	1	2	2	2	1	Winged	helix-turn-helix
MarR	PF01047.17	gi|408403782|ref|YP_006861765.1|	-	0.00066	19.3	0.0	0.0021	17.7	0.0	1.8	2	0	0	2	2	2	1	MarR	family
HTH_24	PF13412.1	gi|408403782|ref|YP_006861765.1|	-	0.0068	15.7	0.0	0.023	14.0	0.0	1.9	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
BNR	PF02012.15	gi|408403784|ref|YP_006861767.1|	-	0.0038	16.8	17.6	0.27	11.2	0.2	4.9	4	0	0	4	4	4	3	BNR/Asp-box	repeat
BNR_2	PF13088.1	gi|408403785|ref|YP_006861768.1|	-	0.00074	18.8	0.2	0.0013	18.1	0.1	1.5	1	0	0	1	1	1	1	BNR	repeat-like	domain
BNR	PF02012.15	gi|408403785|ref|YP_006861768.1|	-	0.3	11.0	0.1	0.3	11.0	0.1	3.5	3	0	0	3	3	3	0	BNR/Asp-box	repeat
Response_reg	PF00072.19	gi|408403787|ref|YP_006861770.1|	-	1.2e-09	38.1	0.0	1.4e-09	37.9	0.0	1.0	1	0	0	1	1	1	1	Response	regulator	receiver	domain
DUF43	PF01861.11	gi|408403787|ref|YP_006861770.1|	-	0.1	11.5	0.1	0.11	11.4	0.1	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	DUF43
Spot_14	PF07084.7	gi|408403788|ref|YP_006861771.1|	-	0.0027	17.5	0.6	0.0089	15.9	0.0	1.9	2	0	0	2	2	2	1	Thyroid	hormone-inducible	hepatic	protein	Spot	14
CHDCT2	PF08074.6	gi|408403788|ref|YP_006861771.1|	-	0.28	10.8	1.6	0.54	9.9	1.1	1.5	1	0	0	1	1	1	0	CHDCT2	(NUC038)	domain
DUF566	PF04484.7	gi|408403788|ref|YP_006861771.1|	-	1	8.7	11.1	4.3	6.7	7.7	1.8	1	1	0	1	1	1	0	Family	of	unknown	function	(DUF566)
DUF1631	PF07793.6	gi|408403788|ref|YP_006861771.1|	-	3	5.8	11.3	18	3.3	0.1	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1631)
Copper-bind	PF00127.15	gi|408403790|ref|YP_006861773.1|	-	2e-12	47.1	0.4	1.2e-11	44.7	0.0	2.5	2	0	0	2	2	2	1	Copper	binding	proteins,	plastocyanin/azurin	family
Cupredoxin_1	PF13473.1	gi|408403790|ref|YP_006861773.1|	-	2.5e-06	27.3	0.0	1.1e-05	25.2	0.0	2.1	2	0	0	2	2	2	1	Cupredoxin-like	domain
MFS_1	PF07690.11	gi|408403791|ref|YP_006861774.1|	-	1.3e-31	109.5	60.7	3.6e-30	104.8	30.2	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
Sugar_tr	PF00083.19	gi|408403791|ref|YP_006861774.1|	-	4.1e-07	28.9	37.3	1.7e-06	26.8	8.7	2.8	2	1	2	4	4	4	3	Sugar	(and	other)	transporter
OATP	PF03137.15	gi|408403791|ref|YP_006861774.1|	-	0.0044	15.1	2.3	0.0044	15.1	1.6	2.1	2	1	0	2	2	2	1	Organic	Anion	Transporter	Polypeptide	(OATP)	family
MFS_3	PF05977.8	gi|408403791|ref|YP_006861774.1|	-	0.0065	14.6	24.4	0.013	13.6	16.8	1.5	1	1	0	1	1	1	1	Transmembrane	secretion	effector
Phage_holin_3	PF05106.7	gi|408403791|ref|YP_006861774.1|	-	0.39	10.7	6.4	0.047	13.6	0.7	2.3	2	0	0	2	2	2	0	Phage	holin	family	(Lysis	protein	S)
Methyltransf_11	PF08241.7	gi|408403793|ref|YP_006861776.1|	-	5.7e-12	45.9	0.0	7.2e-12	45.6	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|408403793|ref|YP_006861776.1|	-	4e-06	26.5	0.0	4.9e-06	26.2	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|408403793|ref|YP_006861776.1|	-	4.5e-06	26.4	0.0	5.4e-06	26.2	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|408403793|ref|YP_006861776.1|	-	2.2e-05	24.8	0.0	3e-05	24.4	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.9	gi|408403793|ref|YP_006861776.1|	-	2.8e-05	23.5	0.0	6.1e-05	22.4	0.0	1.5	1	1	0	1	1	1	1	Methyltransferase	small	domain
CMAS	PF02353.15	gi|408403793|ref|YP_006861776.1|	-	0.0026	16.8	0.0	0.0035	16.4	0.0	1.2	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
Methyltransf_26	PF13659.1	gi|408403793|ref|YP_006861776.1|	-	0.015	15.2	0.0	0.024	14.6	0.0	1.4	1	1	0	1	1	1	0	Methyltransferase	domain
Ubie_methyltran	PF01209.13	gi|408403793|ref|YP_006861776.1|	-	0.085	11.9	0.0	0.097	11.7	0.0	1.1	1	0	0	1	1	1	0	ubiE/COQ5	methyltransferase	family
Isochorismatase	PF00857.15	gi|408403794|ref|YP_006861777.1|	-	2.2e-42	144.9	0.0	2.8e-42	144.6	0.0	1.1	1	0	0	1	1	1	1	Isochorismatase	family
SBF	PF01758.11	gi|408403795|ref|YP_006861778.1|	-	6e-14	51.8	17.4	6e-14	51.8	12.0	2.4	2	1	1	3	3	3	1	Sodium	Bile	acid	symporter	family
Glycos_transf_2	PF00535.21	gi|408403796|ref|YP_006861779.1|	-	2.4e-15	56.6	0.0	3.1e-15	56.2	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.1	gi|408403796|ref|YP_006861779.1|	-	3.3e-06	27.0	0.0	4.3e-06	26.7	0.0	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_4	PF13704.1	gi|408403796|ref|YP_006861779.1|	-	0.022	15.0	0.0	0.041	14.1	0.0	1.4	1	0	0	1	1	1	0	Glycosyl	transferase	family	2
ADH_zinc_N	PF00107.21	gi|408403796|ref|YP_006861779.1|	-	0.15	11.5	0.8	1.1	8.8	0.1	2.1	1	1	1	2	2	2	0	Zinc-binding	dehydrogenase
Glycos_transf_1	PF00534.15	gi|408403797|ref|YP_006861780.1|	-	1.2e-24	86.6	0.2	2.2e-24	85.8	0.1	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.1	gi|408403797|ref|YP_006861780.1|	-	5.4e-12	46.0	0.0	2.5e-11	43.8	0.0	2.0	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Exostosin	PF03016.10	gi|408403797|ref|YP_006861780.1|	-	0.0009	18.3	0.0	0.0014	17.7	0.0	1.2	1	0	0	1	1	1	1	Exostosin	family
MSP7_C	PF12948.2	gi|408403797|ref|YP_006861780.1|	-	0.0013	18.9	0.8	0.32	11.2	0.0	3.3	3	0	0	3	3	3	1	MSP7-like	protein	C-terminal	domain
Glyco_transf_4	PF13439.1	gi|408403797|ref|YP_006861780.1|	-	0.012	15.3	0.0	0.19	11.4	0.0	2.4	1	1	0	1	1	1	0	Glycosyltransferase	Family	4
tRNA_NucTransf2	PF09249.6	gi|408403797|ref|YP_006861780.1|	-	0.034	14.0	0.2	0.092	12.6	0.1	1.7	2	0	0	2	2	2	0	tRNA	nucleotidyltransferase,	second	domain
DUF826	PF05696.6	gi|408403797|ref|YP_006861780.1|	-	0.15	12.1	0.2	0.37	10.9	0.1	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF826)
Nudix_N_2	PF14803.1	gi|408403798|ref|YP_006861781.1|	-	0.019	14.6	0.3	0.11	12.1	0.0	2.2	2	0	0	2	2	2	0	Nudix	N-terminal
DUF1307	PF06998.6	gi|408403798|ref|YP_006861781.1|	-	0.032	14.2	0.2	0.033	14.2	0.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1307)
DUF608	PF04685.8	gi|408403799|ref|YP_006861782.1|	-	3.3e-07	29.3	0.2	6e-07	28.5	0.1	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF608
GDE_C	PF06202.9	gi|408403799|ref|YP_006861782.1|	-	2e-06	26.7	0.5	0.025	13.3	0.0	2.4	2	0	0	2	2	2	2	Amylo-alpha-1,6-glucosidase
Trehalase	PF01204.13	gi|408403799|ref|YP_006861782.1|	-	0.016	13.8	0.1	0.024	13.2	0.1	1.2	1	0	0	1	1	1	0	Trehalase
PQ-loop	PF04193.9	gi|408403800|ref|YP_006861783.1|	-	6.8e-13	47.9	0.7	6.8e-13	47.9	0.5	1.6	1	1	1	2	2	2	1	PQ	loop	repeat
MtN3_slv	PF03083.11	gi|408403800|ref|YP_006861783.1|	-	2.1e-10	40.3	1.2	2.4e-10	40.1	0.8	1.0	1	0	0	1	1	1	1	Sugar	efflux	transporter	for	intercellular	exchange
CRCB	PF02537.10	gi|408403800|ref|YP_006861783.1|	-	0.061	13.2	1.3	0.07	13.0	0.3	1.5	2	0	0	2	2	2	0	CrcB-like	protein
RseC_MucC	PF04246.7	gi|408403800|ref|YP_006861783.1|	-	0.17	11.4	0.3	0.23	11.0	0.1	1.3	1	1	0	1	1	1	0	Positive	regulator	of	sigma(E),	RseC/MucC
ATP-synt_E	PF05680.7	gi|408403801|ref|YP_006861784.1|	-	0.33	10.9	2.7	0.44	10.5	1.9	1.3	1	0	0	1	1	1	0	ATP	synthase	E	chain
DUF2058	PF09831.4	gi|408403801|ref|YP_006861784.1|	-	9.9	6.0	9.6	11	5.8	6.6	1.1	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2058)
Guanylate_cyc	PF00211.15	gi|408403802|ref|YP_006861785.1|	-	1.2e-13	50.8	0.0	1.7e-13	50.3	0.0	1.2	1	0	0	1	1	1	1	Adenylate	and	Guanylate	cyclase	catalytic	domain
SHOCT	PF09851.4	gi|408403803|ref|YP_006861786.1|	-	4.8e-07	29.0	0.4	1.1e-06	27.9	0.3	1.6	1	0	0	1	1	1	1	Short	C-terminal	domain
SWIM	PF04434.12	gi|408403804|ref|YP_006861787.1|	-	2.7e-08	33.0	0.1	3.8e-08	32.6	0.1	1.2	1	0	0	1	1	1	1	SWIM	zinc	finger
DUF2024	PF09630.5	gi|408403805|ref|YP_006861788.1|	-	1.8e-10	40.3	0.5	9e-10	38.1	0.3	1.8	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF2024)
PAC2	PF09754.4	gi|408403809|ref|YP_006861792.1|	-	2.1e-30	106.2	0.0	2.4e-30	106.0	0.0	1.0	1	0	0	1	1	1	1	PAC2	family
TryThrA_C	PF12319.3	gi|408403810|ref|YP_006861793.1|	-	0.044	12.9	2.7	0.048	12.8	1.8	1.0	1	0	0	1	1	1	0	Tryptophan-Threonine-rich	plasmodium	antigen	C	terminal
DUF3435	PF11917.3	gi|408403810|ref|YP_006861793.1|	-	0.2	10.3	4.2	0.23	10.1	2.9	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3435)
DUF3504	PF12012.3	gi|408403810|ref|YP_006861793.1|	-	0.56	9.9	4.9	1.1	9.0	3.4	1.6	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF3504)
Bax1-I	PF01027.15	gi|408403811|ref|YP_006861794.1|	-	0.016	14.8	0.5	0.02	14.5	0.4	1.2	1	0	0	1	1	1	0	Inhibitor	of	apoptosis-promoting	Bax1
DUF308	PF03729.8	gi|408403811|ref|YP_006861794.1|	-	0.026	14.5	3.2	0.92	9.5	0.7	2.3	2	0	0	2	2	2	0	Short	repeat	of	unknown	function	(DUF308)
DUF3185	PF11381.3	gi|408403811|ref|YP_006861794.1|	-	0.12	12.2	7.9	0.8	9.5	2.2	2.4	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3185)
Ni_hydr_CYTB	PF01292.15	gi|408403811|ref|YP_006861794.1|	-	0.12	11.7	0.3	0.16	11.3	0.2	1.2	1	0	0	1	1	1	0	Prokaryotic	cytochrome	b561
YtpI	PF14007.1	gi|408403811|ref|YP_006861794.1|	-	0.15	12.0	4.4	0.3	11.0	0.7	2.1	2	0	0	2	2	2	0	YtpI-like	protein
DUF3188	PF11384.3	gi|408403811|ref|YP_006861794.1|	-	0.17	11.5	0.1	0.17	11.5	0.0	2.8	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3188)
DUF3784	PF12650.2	gi|408403811|ref|YP_006861794.1|	-	0.81	9.6	4.5	4.2	7.3	3.1	1.9	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF3784)
DUF3098	PF11297.3	gi|408403811|ref|YP_006861794.1|	-	0.93	9.2	7.1	1	9.1	1.1	2.1	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3098)
FtsX	PF02687.16	gi|408403811|ref|YP_006861794.1|	-	1.3	8.8	7.5	2.2	8.0	5.2	1.5	1	1	0	1	1	1	0	FtsX-like	permease	family
Gram_pos_anchor	PF00746.16	gi|408403811|ref|YP_006861794.1|	-	2.8	7.8	7.4	4	7.3	1.1	2.5	2	0	0	2	2	2	0	Gram	positive	anchor
PepSY_TM_2	PF13703.1	gi|408403811|ref|YP_006861794.1|	-	3.1	8.0	7.0	4.9	7.4	0.2	2.1	1	1	1	2	2	2	0	PepSY-associated	TM	helix
IncA	PF04156.9	gi|408403811|ref|YP_006861794.1|	-	5.1	6.6	6.3	7.5	6.0	2.0	2.0	2	0	0	2	2	2	0	IncA	protein
Talin_middle	PF09141.5	gi|408403812|ref|YP_006861795.1|	-	0.057	13.1	0.0	0.061	12.9	0.0	1.1	1	0	0	1	1	1	0	Talin,	middle	domain
NPV_P10	PF05531.7	gi|408403812|ref|YP_006861795.1|	-	0.096	12.9	0.3	1.8	8.8	0.0	2.0	1	1	1	2	2	2	0	Nucleopolyhedrovirus	P10	protein
Nitroreductase	PF00881.19	gi|408403813|ref|YP_006861796.1|	-	1.7e-30	106.0	0.0	2e-30	105.7	0.0	1.1	1	0	0	1	1	1	1	Nitroreductase	family
Multi_ubiq	PF14452.1	gi|408403815|ref|YP_006861798.1|	-	4.5e-06	26.5	0.0	6.6e-06	26.0	0.0	1.1	1	0	0	1	1	1	1	Multiubiquitin
ATP-synt_10	PF05176.9	gi|408403815|ref|YP_006861798.1|	-	0.053	12.7	0.1	0.078	12.2	0.0	1.3	1	1	0	1	1	1	0	ATP10	protein
Abhydrolase_5	PF12695.2	gi|408403817|ref|YP_006861800.1|	-	4.6e-20	71.8	0.3	6e-20	71.4	0.2	1.1	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_6	PF12697.2	gi|408403817|ref|YP_006861800.1|	-	5.6e-13	49.3	0.5	4.1e-06	26.8	0.3	2.1	1	1	1	2	2	2	2	Alpha/beta	hydrolase	family
DLH	PF01738.13	gi|408403817|ref|YP_006861800.1|	-	1.6e-12	47.1	0.0	2.3e-12	46.6	0.0	1.1	1	0	0	1	1	1	1	Dienelactone	hydrolase	family
Peptidase_S15	PF02129.13	gi|408403817|ref|YP_006861800.1|	-	3.1e-06	26.8	0.8	0.0094	15.4	0.4	2.1	1	1	1	2	2	2	2	X-Pro	dipeptidyl-peptidase	(S15	family)
Peptidase_S9	PF00326.16	gi|408403817|ref|YP_006861800.1|	-	2.1e-05	23.8	1.3	0.017	14.3	0.4	2.5	2	1	1	3	3	3	2	Prolyl	oligopeptidase	family
BAAT_C	PF08840.6	gi|408403817|ref|YP_006861800.1|	-	0.00018	21.3	0.2	0.02	14.6	0.1	2.2	1	1	1	2	2	2	1	BAAT	/	Acyl-CoA	thioester	hydrolase	C	terminal
DUF347	PF03988.7	gi|408403817|ref|YP_006861800.1|	-	0.021	14.6	2.0	0.05	13.4	0.1	2.3	3	0	0	3	3	3	0	Repeat	of	Unknown	Function	(DUF347)
Abhydrolase_1	PF00561.15	gi|408403817|ref|YP_006861800.1|	-	0.026	14.0	0.7	0.29	10.6	0.3	2.1	1	1	1	2	2	2	0	alpha/beta	hydrolase	fold
Abhydrolase_2	PF02230.11	gi|408403817|ref|YP_006861800.1|	-	0.03	13.7	0.0	2.4	7.5	0.0	2.2	2	0	0	2	2	2	0	Phospholipase/Carboxylesterase
Abhydrolase_3	PF07859.8	gi|408403817|ref|YP_006861800.1|	-	0.036	13.6	1.2	2.1	7.8	0.9	2.4	1	1	1	2	2	2	0	alpha/beta	hydrolase	fold
DUF1749	PF08538.5	gi|408403817|ref|YP_006861800.1|	-	0.059	12.2	0.0	0.13	11.0	0.0	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1749)
PAF-AH_p_II	PF03403.8	gi|408403817|ref|YP_006861800.1|	-	0.12	10.6	0.0	1.3	7.1	0.0	2.0	2	0	0	2	2	2	0	Platelet-activating	factor	acetylhydrolase,	isoform	II
Erythro_esteras	PF05139.9	gi|408403818|ref|YP_006861801.1|	-	8.2e-32	110.7	0.1	9.6e-32	110.5	0.0	1.1	1	0	0	1	1	1	1	Erythromycin	esterase
Erythro_esteras	PF05139.9	gi|408403819|ref|YP_006861802.1|	-	5.6e-62	209.9	0.1	6.2e-62	209.7	0.1	1.0	1	0	0	1	1	1	1	Erythromycin	esterase
Oxidored_q6	PF01058.17	gi|408403820|ref|YP_006861803.1|	-	8.7e-24	83.5	0.0	1.2e-23	83.1	0.0	1.2	1	0	0	1	1	1	1	NADH	ubiquinone	oxidoreductase,	20	Kd	subunit
Complex1_49kDa	PF00346.14	gi|408403821|ref|YP_006861804.1|	-	6.6e-68	228.6	0.0	1.5e-53	181.5	0.0	2.1	1	1	1	2	2	2	2	Respiratory-chain	NADH	dehydrogenase,	49	Kd	subunit
NiFeSe_Hases	PF00374.14	gi|408403821|ref|YP_006861804.1|	-	0.066	11.9	0.0	2.2	6.9	0.0	2.1	2	0	0	2	2	2	0	Nickel-dependent	hydrogenase
Bac_luciferase	PF00296.15	gi|408403822|ref|YP_006861805.1|	-	4.3e-25	88.4	0.5	4.8e-25	88.3	0.3	1.0	1	0	0	1	1	1	1	Luciferase-like	monooxygenase
DUF4366	PF14283.1	gi|408403823|ref|YP_006861806.1|	-	0.0005	19.5	0.4	0.32	10.3	0.0	2.0	1	1	1	2	2	2	2	Domain	of	unknown	function	(DUF4366)
SpoIIIAH	PF12685.2	gi|408403823|ref|YP_006861806.1|	-	0.08	12.4	0.0	0.1	12.0	0.0	1.1	1	0	0	1	1	1	0	SpoIIIAH-like	protein
Apolipoprotein	PF01442.13	gi|408403825|ref|YP_006861808.1|	-	0.0075	15.8	2.9	0.0075	15.8	2.0	2.2	2	0	0	2	2	2	1	Apolipoprotein	A1/A4/E	domain
Phasin_2	PF09361.5	gi|408403825|ref|YP_006861808.1|	-	0.0097	15.9	8.9	0.27	11.2	1.1	2.6	2	1	0	2	2	2	2	Phasin	protein
DUF3810	PF12725.2	gi|408403825|ref|YP_006861808.1|	-	0.025	13.5	0.9	0.055	12.3	0.1	1.7	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3810)
DUF643	PF04867.7	gi|408403825|ref|YP_006861808.1|	-	0.12	12.8	0.2	0.31	11.4	0.0	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF643)
Colicin_immun	PF09204.5	gi|408403825|ref|YP_006861808.1|	-	0.12	12.4	1.2	0.27	11.3	0.9	1.6	1	0	0	1	1	1	0	Bacterial	self-protective	colicin-like	immunity
Ribosomal_L20	PF00453.13	gi|408403825|ref|YP_006861808.1|	-	0.28	11.1	10.5	1.8	8.5	1.1	2.2	2	0	0	2	2	2	0	Ribosomal	protein	L20
Pepsin-I3	PF06394.8	gi|408403825|ref|YP_006861808.1|	-	0.79	9.4	5.3	0.21	11.2	0.3	2.5	3	1	0	3	3	3	0	Pepsin	inhibitor-3-like	repeated	domain
Phage_GPO	PF05929.6	gi|408403825|ref|YP_006861808.1|	-	1.6	7.9	6.6	8.8	5.4	3.5	2.0	2	0	0	2	2	2	0	Phage	capsid	scaffolding	protein	(GPO)	serine	peptidase
HisKA_3	PF07730.8	gi|408403825|ref|YP_006861808.1|	-	2.3	8.6	10.1	5.4	7.4	2.7	3.2	2	1	1	3	3	3	0	Histidine	kinase
DUF1664	PF07889.7	gi|408403825|ref|YP_006861808.1|	-	4.9	6.9	6.0	1.1	9.0	0.6	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1664)
YtxH	PF12732.2	gi|408403825|ref|YP_006861808.1|	-	6.3	7.2	7.1	2.4e+02	2.1	4.9	2.9	1	1	0	1	1	1	0	YtxH-like	protein
Peptidase_M23	PF01551.17	gi|408403827|ref|YP_006861810.1|	-	5.4e-21	74.4	0.1	8.2e-21	73.8	0.1	1.2	1	0	0	1	1	1	1	Peptidase	family	M23
RF-1	PF00472.15	gi|408403828|ref|YP_006861811.1|	-	0.014	15.2	0.3	0.023	14.4	0.0	1.7	2	1	0	2	2	2	0	RF-1	domain
PRC	PF05239.11	gi|408403830|ref|YP_006861813.1|	-	0.0021	17.9	0.4	0.0034	17.2	0.3	1.5	1	1	0	1	1	1	1	PRC-barrel	domain
DUF2171	PF09939.4	gi|408403830|ref|YP_006861813.1|	-	0.064	13.2	0.0	0.19	11.7	0.0	1.7	1	1	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2171)
DUF2795	PF11387.3	gi|408403832|ref|YP_006861815.1|	-	0.0081	15.9	1.5	0.024	14.5	0.2	2.4	2	1	0	2	2	2	1	Protein	of	unknown	function	(DUF2795)
rRNA_processing	PF08524.6	gi|408403832|ref|YP_006861815.1|	-	0.038	13.7	0.4	1.6	8.5	0.0	2.3	1	1	1	2	2	2	0	rRNA	processing
zf-C2H2	PF00096.21	gi|408403833|ref|YP_006861816.1|	-	0.00035	20.7	0.1	0.00057	20.0	0.1	1.4	1	0	0	1	1	1	1	Zinc	finger,	C2H2	type
zf-C2H2_4	PF13894.1	gi|408403833|ref|YP_006861816.1|	-	0.0016	18.6	0.2	0.0025	18.0	0.1	1.3	1	0	0	1	1	1	1	C2H2-type	zinc	finger
zf-C2H2_2	PF12756.2	gi|408403833|ref|YP_006861816.1|	-	0.0031	17.5	0.0	0.0056	16.7	0.0	1.4	1	0	0	1	1	1	1	C2H2	type	zinc-finger	(2	copies)
DUF2795	PF11387.3	gi|408403833|ref|YP_006861816.1|	-	0.0052	16.6	0.1	0.013	15.3	0.1	1.7	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF2795)
zf-H2C2_2	PF13465.1	gi|408403833|ref|YP_006861816.1|	-	0.023	14.9	1.3	2.3	8.6	0.0	2.3	2	0	0	2	2	2	0	Zinc-finger	double	domain
zf-C2H2_6	PF13912.1	gi|408403833|ref|YP_006861816.1|	-	0.038	13.8	0.2	0.051	13.5	0.2	1.2	1	0	0	1	1	1	0	C2H2-type	zinc	finger
zf-Di19	PF05605.7	gi|408403833|ref|YP_006861816.1|	-	0.042	13.9	0.0	0.057	13.5	0.0	1.3	1	0	0	1	1	1	0	Drought	induced	19	protein	(Di19),	zinc-binding
zf-met2	PF12907.2	gi|408403833|ref|YP_006861816.1|	-	0.074	13.0	1.4	0.15	12.0	1.0	1.5	1	1	0	1	1	1	0	Zinc-binding
zf-DBF	PF07535.7	gi|408403833|ref|YP_006861816.1|	-	0.086	12.5	0.5	0.14	11.8	0.3	1.3	1	0	0	1	1	1	0	DBF	zinc	finger
Pectinesterase	PF01095.14	gi|408403833|ref|YP_006861816.1|	-	0.1	11.1	0.1	0.11	11.0	0.1	1.1	1	0	0	1	1	1	0	Pectinesterase
zf-BED	PF02892.10	gi|408403833|ref|YP_006861816.1|	-	0.12	12.1	0.0	0.24	11.2	0.0	1.5	1	0	0	1	1	1	0	BED	zinc	finger
DUF3042	PF11240.3	gi|408403834|ref|YP_006861817.1|	-	0.21	11.3	2.1	0.57	10.0	1.5	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3042)
ResIII	PF04851.10	gi|408403835|ref|YP_006861818.1|	-	0.063	13.1	0.0	0.083	12.7	0.0	1.2	1	0	0	1	1	1	0	Type	III	restriction	enzyme,	res	subunit
Usp	PF00582.21	gi|408403837|ref|YP_006861820.1|	-	7.6e-33	113.6	0.2	9.1e-33	113.4	0.2	1.1	1	0	0	1	1	1	1	Universal	stress	protein	family
AP_endonuc_2	PF01261.19	gi|408403837|ref|YP_006861820.1|	-	0.0047	16.2	0.0	0.0085	15.3	0.0	1.4	1	1	0	1	1	1	1	Xylose	isomerase-like	TIM	barrel
ADH_zinc_N	PF00107.21	gi|408403837|ref|YP_006861820.1|	-	0.022	14.2	0.3	0.048	13.2	0.1	1.6	1	1	1	2	2	2	0	Zinc-binding	dehydrogenase
ETF	PF01012.16	gi|408403837|ref|YP_006861820.1|	-	0.058	13.1	0.7	0.33	10.6	0.5	2.1	1	1	0	1	1	1	0	Electron	transfer	flavoprotein	domain
Glyco_hydro_97	PF10566.4	gi|408403837|ref|YP_006861820.1|	-	0.13	11.3	0.3	12	4.9	0.0	2.2	1	1	1	2	2	2	0	Glycoside	hydrolase	97
zf-C2H2_6	PF13912.1	gi|408403838|ref|YP_006861821.1|	-	0.00026	20.7	0.1	0.00034	20.4	0.0	1.2	1	0	0	1	1	1	1	C2H2-type	zinc	finger
zf-C2H2	PF00096.21	gi|408403838|ref|YP_006861821.1|	-	0.00048	20.3	0.3	0.00064	19.9	0.2	1.2	1	0	0	1	1	1	1	Zinc	finger,	C2H2	type
zf-C2H2_4	PF13894.1	gi|408403838|ref|YP_006861821.1|	-	0.00062	19.9	0.1	0.00089	19.4	0.1	1.2	1	0	0	1	1	1	1	C2H2-type	zinc	finger
zf-C2H2_jaz	PF12171.3	gi|408403838|ref|YP_006861821.1|	-	0.013	15.6	0.2	0.018	15.1	0.1	1.3	1	0	0	1	1	1	0	Zinc-finger	double-stranded	RNA-binding
YhfH	PF14149.1	gi|408403838|ref|YP_006861821.1|	-	0.019	14.7	0.1	0.023	14.4	0.1	1.2	1	0	0	1	1	1	0	YhfH-like	protein
zf-met	PF12874.2	gi|408403838|ref|YP_006861821.1|	-	0.025	14.8	0.1	0.034	14.3	0.1	1.3	1	0	0	1	1	1	0	Zinc-finger	of	C2H2	type
Bunya_G2	PF03563.8	gi|408403838|ref|YP_006861821.1|	-	0.042	12.7	0.0	0.042	12.7	0.0	1.1	1	0	0	1	1	1	0	Bunyavirus	glycoprotein	G2
C1_2	PF03107.11	gi|408403838|ref|YP_006861821.1|	-	0.064	13.3	0.3	0.12	12.5	0.2	1.5	1	0	0	1	1	1	0	C1	domain
zf-FCS	PF06467.9	gi|408403838|ref|YP_006861821.1|	-	0.072	12.7	0.0	0.1	12.2	0.0	1.2	1	0	0	1	1	1	0	MYM-type	Zinc	finger	with	FCS	sequence	motif
Prok-RING_1	PF14446.1	gi|408403838|ref|YP_006861821.1|	-	0.08	12.6	0.3	0.11	12.2	0.2	1.2	1	0	0	1	1	1	0	Prokaryotic	RING	finger	family	1
zf-C2HC_2	PF13913.1	gi|408403838|ref|YP_006861821.1|	-	0.095	12.3	0.2	0.12	12.0	0.1	1.2	1	0	0	1	1	1	0	zinc-finger	of	a	C2HC-type
zf-H2C2_2	PF13465.1	gi|408403838|ref|YP_006861821.1|	-	0.19	12.0	0.5	0.19	12.0	0.4	1.7	2	0	0	2	2	2	0	Zinc-finger	double	domain
DUF4443	PF14544.1	gi|408403839|ref|YP_006861822.1|	-	3.8e-08	33.1	0.0	6.1e-08	32.5	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4443)
DUF4093	PF13331.1	gi|408403839|ref|YP_006861822.1|	-	0.006	16.7	0.1	0.016	15.3	0.0	1.7	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4093)
HTH_Mga	PF08280.6	gi|408403839|ref|YP_006861822.1|	-	0.15	11.8	0.0	0.25	11.1	0.0	1.3	1	0	0	1	1	1	0	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
CbtB	PF09489.5	gi|408403840|ref|YP_006861823.1|	-	4.1e-07	29.8	3.9	3.3e-05	23.6	0.5	2.1	2	0	0	2	2	2	2	Probable	cobalt	transporter	subunit	(CbtB)
CbtA	PF09490.5	gi|408403841|ref|YP_006861824.1|	-	5.4e-19	68.4	6.1	9.7e-19	67.5	4.3	1.4	1	1	0	1	1	1	1	Probable	cobalt	transporter	subunit	(CbtA)
EpsG	PF14897.1	gi|408403841|ref|YP_006861824.1|	-	0.028	13.3	0.2	0.045	12.6	0.1	1.4	1	1	0	1	1	1	0	EpsG	family
Gly-zipper_YMGG	PF13441.1	gi|408403841|ref|YP_006861824.1|	-	2.1	7.9	7.7	5.2	6.6	0.3	2.6	2	0	0	2	2	2	0	YMGG-like	Gly-zipper
HisKA_3	PF07730.8	gi|408403842|ref|YP_006861825.1|	-	0.061	13.6	8.9	0.19	12.1	0.3	2.8	1	1	2	3	3	3	0	Histidine	kinase
DUF948	PF06103.6	gi|408403842|ref|YP_006861825.1|	-	0.087	12.6	1.7	0.56	10.0	0.4	2.1	2	0	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF948)
Intimin_C	PF07979.6	gi|408403842|ref|YP_006861825.1|	-	0.089	12.9	0.2	0.15	12.3	0.1	1.3	1	0	0	1	1	1	0	Intimin	C-type	lectin	domain
DUF2590	PF10761.4	gi|408403842|ref|YP_006861825.1|	-	0.13	12.0	1.6	0.27	11.0	1.1	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2590)
DUF3726	PF12525.3	gi|408403842|ref|YP_006861825.1|	-	0.15	11.8	3.0	0.17	11.6	0.4	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3726)
HisKA	PF00512.20	gi|408403842|ref|YP_006861825.1|	-	0.69	9.9	2.7	13	5.9	1.9	2.3	1	1	0	1	1	1	0	His	Kinase	A	(phospho-acceptor)	domain
OspD	PF03207.8	gi|408403842|ref|YP_006861825.1|	-	4.5	6.3	8.4	8.6	5.4	5.8	1.5	1	1	0	1	1	1	0	Borrelia	outer	surface	protein	D	(OspD)
DUF1423	PF07227.6	gi|408403842|ref|YP_006861825.1|	-	4.6	5.7	9.4	5.8	5.4	6.5	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1423)
PhageMin_Tail	PF10145.4	gi|408403842|ref|YP_006861825.1|	-	7.1	6.2	8.3	11	5.6	5.8	1.3	1	0	0	1	1	1	0	Phage-related	minor	tail	protein
Baculo_p33	PF05214.7	gi|408403843|ref|YP_006861826.1|	-	0.032	13.4	0.2	0.14	11.3	0.2	1.9	2	0	0	2	2	2	0	Baculovirus	P33
Polyketide_cyc2	PF10604.4	gi|408403844|ref|YP_006861827.1|	-	7.9e-14	52.0	0.1	8.9e-14	51.8	0.1	1.0	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
Polyketide_cyc	PF03364.15	gi|408403844|ref|YP_006861827.1|	-	6.1e-08	32.7	0.0	1.1e-07	31.9	0.0	1.4	1	1	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
AHSA1	PF08327.6	gi|408403844|ref|YP_006861827.1|	-	0.00084	19.4	0.0	0.0011	19.0	0.0	1.2	1	0	0	1	1	1	1	Activator	of	Hsp90	ATPase	homolog	1-like	protein
COXG	PF06240.8	gi|408403844|ref|YP_006861827.1|	-	0.0039	16.8	0.2	0.017	14.8	0.1	1.9	1	1	0	1	1	1	1	Carbon	monoxide	dehydrogenase	subunit	G	(CoxG)
Glycos_transf_2	PF00535.21	gi|408403845|ref|YP_006861828.1|	-	2.4e-28	98.9	0.0	3.5e-28	98.4	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.1	gi|408403845|ref|YP_006861828.1|	-	5.3e-23	82.0	0.0	7.4e-23	81.5	0.0	1.1	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_transf_21	PF13506.1	gi|408403845|ref|YP_006861828.1|	-	1.8e-10	40.3	0.0	4.2e-10	39.1	0.0	1.6	1	1	0	1	1	1	1	Glycosyl	transferase	family	21
Glyco_tranf_2_2	PF10111.4	gi|408403845|ref|YP_006861828.1|	-	5.1e-06	25.7	0.0	6.6e-06	25.4	0.0	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_4	PF13704.1	gi|408403845|ref|YP_006861828.1|	-	0.00027	21.1	0.0	0.00048	20.3	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glycophorin_A	PF01102.13	gi|408403845|ref|YP_006861828.1|	-	0.056	13.2	0.0	0.12	12.1	0.0	1.6	1	0	0	1	1	1	0	Glycophorin	A
DUF3595	PF12166.3	gi|408403845|ref|YP_006861828.1|	-	0.18	10.5	1.2	0.28	9.9	0.8	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3595)
HTH_45	PF14947.1	gi|408403846|ref|YP_006861829.1|	-	7.9e-21	73.6	1.3	9.3e-21	73.4	0.9	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF4364	PF14277.1	gi|408403846|ref|YP_006861829.1|	-	0.00014	21.5	0.3	0.00017	21.2	0.2	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4364)
HTH_27	PF13463.1	gi|408403846|ref|YP_006861829.1|	-	0.0072	16.6	0.0	0.011	16.0	0.0	1.3	1	1	0	1	1	1	1	Winged	helix	DNA-binding	domain
DUF3139	PF11337.3	gi|408403846|ref|YP_006861829.1|	-	0.026	14.7	0.1	0.12	12.6	0.0	1.8	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3139)
HTH_24	PF13412.1	gi|408403846|ref|YP_006861829.1|	-	0.053	12.9	0.1	0.093	12.1	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
Penicillinase_R	PF03965.11	gi|408403846|ref|YP_006861829.1|	-	0.062	13.4	0.1	0.071	13.2	0.1	1.3	1	0	0	1	1	1	0	Penicillinase	repressor
Phage_rep_O	PF04492.8	gi|408403846|ref|YP_006861829.1|	-	0.064	13.4	0.0	0.09	12.9	0.0	1.2	1	0	0	1	1	1	0	Bacteriophage	replication	protein	O
Trypsin_2	PF13365.1	gi|408403847|ref|YP_006861830.1|	-	2e-20	72.9	0.3	3.7e-20	72.0	0.2	1.5	1	0	0	1	1	1	1	Trypsin-like	peptidase	domain
PDZ_2	PF13180.1	gi|408403847|ref|YP_006861830.1|	-	9e-14	51.1	0.4	2.4e-13	49.7	0.1	1.9	2	0	0	2	2	2	1	PDZ	domain
Trypsin	PF00089.21	gi|408403847|ref|YP_006861830.1|	-	1.2e-11	44.6	0.0	2.6e-11	43.5	0.0	1.5	1	1	0	1	1	1	1	Trypsin
PDZ	PF00595.19	gi|408403847|ref|YP_006861830.1|	-	8.6e-05	22.6	2.6	0.26	11.4	0.0	3.2	3	0	0	3	3	3	2	PDZ	domain	(Also	known	as	DHR	or	GLGF)
Peptidase_S29	PF02907.10	gi|408403847|ref|YP_006861830.1|	-	0.0039	16.7	0.1	0.0068	15.9	0.1	1.4	1	0	0	1	1	1	1	Hepatitis	C	virus	NS3	protease
Peptidase_S46	PF10459.4	gi|408403847|ref|YP_006861830.1|	-	0.029	12.8	0.3	0.05	12.0	0.2	1.3	1	0	0	1	1	1	0	Peptidase	S46
Peptidase_S7	PF00949.16	gi|408403847|ref|YP_006861830.1|	-	0.13	11.7	0.5	0.27	10.6	0.1	1.7	2	0	0	2	2	2	0	Peptidase	S7,	Flavivirus	NS3	serine	protease
Radical_SAM	PF04055.16	gi|408403848|ref|YP_006861831.1|	-	5.9e-11	42.8	0.0	9.7e-11	42.1	0.0	1.4	1	0	0	1	1	1	1	Radical	SAM	superfamily
DUF4590	PF15257.1	gi|408403848|ref|YP_006861831.1|	-	0.1	12.3	0.1	0.17	11.6	0.1	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4590)
Radical_SAM	PF04055.16	gi|408403849|ref|YP_006861832.1|	-	2.2e-18	67.0	0.0	5.6e-18	65.6	0.0	1.7	2	0	0	2	2	2	1	Radical	SAM	superfamily
TFIIB	PF00382.14	gi|408403850|ref|YP_006861833.1|	-	7.2e-30	102.6	2.7	4.3e-17	61.6	0.1	2.4	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.7	gi|408403850|ref|YP_006861833.1|	-	0.00026	20.2	2.3	0.0005	19.3	1.6	1.4	1	0	0	1	1	1	1	TFIIB	zinc-binding
HTH_11	PF08279.7	gi|408403850|ref|YP_006861833.1|	-	0.012	15.2	0.7	0.92	9.2	0.0	2.9	2	0	0	2	2	2	0	HTH	domain
HTH_36	PF13730.1	gi|408403850|ref|YP_006861833.1|	-	0.05	13.7	0.0	0.14	12.2	0.0	1.9	1	0	0	1	1	1	0	Helix-turn-helix	domain
Potex_coat	PF06184.6	gi|408403850|ref|YP_006861833.1|	-	0.1	11.9	0.0	0.34	10.2	0.0	1.8	2	0	0	2	2	2	0	Potexvirus	coat	protein
LST1	PF05083.8	gi|408403850|ref|YP_006861833.1|	-	0.1	12.6	0.1	0.27	11.2	0.1	1.7	1	0	0	1	1	1	0	LST-1	protein
Cyclin_N	PF00134.18	gi|408403850|ref|YP_006861833.1|	-	0.15	11.6	0.6	1.6	8.2	0.0	2.3	2	0	0	2	2	2	0	Cyclin,	N-terminal	domain
HTH_45	PF14947.1	gi|408403851|ref|YP_006861834.1|	-	0.00065	19.4	0.1	0.0011	18.7	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF3353	PF11833.3	gi|408403851|ref|YP_006861834.1|	-	0.00095	18.6	0.7	0.0014	18.1	0.5	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3353)
HTH_5	PF01022.15	gi|408403851|ref|YP_006861834.1|	-	0.0045	16.6	0.0	0.0084	15.7	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_24	PF13412.1	gi|408403851|ref|YP_006861834.1|	-	0.029	13.7	0.0	0.045	13.1	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
DUF3099	PF11298.3	gi|408403851|ref|YP_006861834.1|	-	0.51	10.1	3.6	2	8.2	2.5	2.1	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3099)
FA_desaturase	PF00487.19	gi|408403851|ref|YP_006861834.1|	-	2.2	7.6	6.2	0.78	9.1	2.3	1.6	1	1	1	2	2	2	0	Fatty	acid	desaturase
Proteasome	PF00227.21	gi|408403853|ref|YP_006861836.1|	-	3.8e-05	23.0	0.1	0.0015	17.8	0.0	2.5	1	1	0	2	2	2	1	Proteasome	subunit
ATP-cone	PF03477.11	gi|408403853|ref|YP_006861836.1|	-	0.03	14.7	1.4	0.03	14.7	1.0	2.6	2	1	0	2	2	2	0	ATP	cone	domain
Hs1pro-1_N	PF07231.7	gi|408403853|ref|YP_006861836.1|	-	0.046	13.3	0.0	0.078	12.5	0.0	1.3	1	0	0	1	1	1	0	Hs1pro-1	N-terminus
DUF3887	PF13026.1	gi|408403853|ref|YP_006861836.1|	-	0.14	12.4	0.4	0.14	12.4	0.3	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3887)
Antitoxin-MazE	PF04014.13	gi|408403854|ref|YP_006861837.1|	-	2.6e-05	23.8	0.4	3.3e-05	23.5	0.2	1.2	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE
DDE_Tnp_IS240	PF13610.1	gi|408403855|ref|YP_006861838.1|	-	5e-19	68.6	1.6	1.3e-18	67.3	1.1	1.7	1	1	0	1	1	1	1	DDE	domain
rve	PF00665.21	gi|408403855|ref|YP_006861838.1|	-	1e-09	38.5	0.1	2e-09	37.6	0.0	1.4	1	0	0	1	1	1	1	Integrase	core	domain
rve_3	PF13683.1	gi|408403855|ref|YP_006861838.1|	-	6.1e-06	25.6	0.1	2.1e-05	23.9	0.0	1.9	1	0	0	1	1	1	1	Integrase	core	domain
MULE	PF10551.4	gi|408403855|ref|YP_006861838.1|	-	9.1e-05	22.5	0.0	0.00055	20.0	0.0	2.1	2	0	0	2	2	2	1	MULE	transposase	domain
Transposase_mut	PF00872.13	gi|408403855|ref|YP_006861838.1|	-	0.00012	20.7	1.3	0.089	11.3	0.0	2.1	1	1	1	2	2	2	2	Transposase,	Mutator	family
SWIM	PF04434.12	gi|408403855|ref|YP_006861838.1|	-	0.00035	19.9	0.2	0.0011	18.3	0.1	1.8	1	0	0	1	1	1	1	SWIM	zinc	finger
Zn_Tnp_IS1595	PF12760.2	gi|408403855|ref|YP_006861838.1|	-	0.017	14.9	1.1	0.047	13.5	0.8	1.8	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
DDE_Tnp_IS1595	PF12762.2	gi|408403855|ref|YP_006861838.1|	-	0.019	14.7	0.3	0.035	13.9	0.2	1.4	1	0	0	1	1	1	0	ISXO2-like	transposase	domain
HTH_28	PF13518.1	gi|408403855|ref|YP_006861838.1|	-	0.094	12.7	0.0	0.29	11.1	0.0	1.8	1	0	0	1	1	1	0	Helix-turn-helix	domain
Zn-ribbon_8	PF09723.5	gi|408403855|ref|YP_006861838.1|	-	0.11	12.4	4.1	2.9	7.9	0.4	3.2	3	0	0	3	3	3	0	Zinc	ribbon	domain
OrfB_Zn_ribbon	PF07282.6	gi|408403855|ref|YP_006861838.1|	-	0.29	10.8	3.0	0.67	9.6	0.7	2.3	2	0	0	2	2	2	0	Putative	transposase	DNA-binding	domain
TFIIS_C	PF01096.13	gi|408403855|ref|YP_006861838.1|	-	0.63	9.7	4.2	5.4	6.7	1.4	2.5	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
zf-C2H2	PF00096.21	gi|408403855|ref|YP_006861838.1|	-	1.7	9.1	6.5	0.37	11.2	1.3	2.3	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
BCDHK_Adom3	PF10436.4	gi|408403857|ref|YP_006861840.1|	-	0.033	13.7	0.0	0.047	13.1	0.0	1.2	1	0	0	1	1	1	0	Mitochondrial	branched-chain	alpha-ketoacid	dehydrogenase	kinase
HEPN	PF05168.9	gi|408403858|ref|YP_006861841.1|	-	0.0067	16.2	0.5	0.03	14.2	0.1	2.2	2	1	1	3	3	3	1	HEPN	domain
Vac_Fusion	PF02346.11	gi|408403858|ref|YP_006861841.1|	-	0.019	14.3	0.1	0.053	12.9	0.1	1.8	1	0	0	1	1	1	0	Chordopoxvirus	fusion	protein
KilA-N	PF04383.8	gi|408403858|ref|YP_006861841.1|	-	0.021	14.4	0.2	1.5	8.5	0.0	2.3	2	0	0	2	2	2	0	KilA-N	domain
DNA_methylase	PF00145.12	gi|408403859|ref|YP_006861842.1|	-	8.3e-34	117.1	0.7	3.7e-31	108.4	0.5	2.0	1	1	0	1	1	1	1	C-5	cytosine-specific	DNA	methylase
Methyltransf_26	PF13659.1	gi|408403859|ref|YP_006861842.1|	-	3.3e-06	27.1	0.0	4.4e-06	26.7	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_15	PF09445.5	gi|408403859|ref|YP_006861842.1|	-	0.00046	19.7	1.3	0.0013	18.2	0.9	1.8	1	1	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
MethyltransfD12	PF02086.10	gi|408403859|ref|YP_006861842.1|	-	0.003	17.0	0.0	0.0049	16.3	0.0	1.3	1	1	0	1	1	1	1	D12	class	N6	adenine-specific	DNA	methyltransferase
Cons_hypoth95	PF03602.10	gi|408403859|ref|YP_006861842.1|	-	0.029	13.7	0.0	0.042	13.2	0.0	1.4	1	1	0	1	1	1	0	Conserved	hypothetical	protein	95
Methyltransf_31	PF13847.1	gi|408403859|ref|YP_006861842.1|	-	0.034	13.7	0.0	0.036	13.6	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	domain
Eco57I	PF07669.6	gi|408403859|ref|YP_006861842.1|	-	0.039	14.3	0.0	0.075	13.4	0.0	1.4	1	0	0	1	1	1	0	Eco57I	restriction-modification	methylase
PrmA	PF06325.8	gi|408403859|ref|YP_006861842.1|	-	0.045	12.8	0.0	0.06	12.4	0.0	1.2	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
UPF0020	PF01170.13	gi|408403859|ref|YP_006861842.1|	-	0.079	12.5	0.0	0.13	11.7	0.0	1.4	1	1	0	1	1	1	0	Putative	RNA	methylase	family	UPF0020
TIR_2	PF13676.1	gi|408403861|ref|YP_006861844.1|	-	5.8e-24	84.2	0.0	8.3e-24	83.6	0.0	1.2	1	0	0	1	1	1	1	TIR	domain
DUF1863	PF08937.6	gi|408403861|ref|YP_006861844.1|	-	3.2e-06	27.2	1.2	2e-05	24.6	0.7	2.1	2	1	0	2	2	2	1	MTH538	TIR-like	domain	(DUF1863)
TIR	PF01582.15	gi|408403861|ref|YP_006861844.1|	-	0.00011	21.7	0.0	0.00015	21.2	0.0	1.2	1	0	0	1	1	1	1	TIR	domain
zinc_ribbon_2	PF13240.1	gi|408403861|ref|YP_006861844.1|	-	0.0048	16.3	2.2	0.0093	15.4	1.5	1.5	1	0	0	1	1	1	1	zinc-ribbon	domain
A2L_zn_ribbon	PF08792.5	gi|408403861|ref|YP_006861844.1|	-	0.013	14.9	4.3	7.6	6.1	0.1	3.2	3	0	0	3	3	3	0	A2L	zinc	ribbon	domain
Lar_restr_allev	PF14354.1	gi|408403861|ref|YP_006861844.1|	-	0.036	14.3	1.2	0.063	13.5	0.8	1.4	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
zf-TFIIB	PF13453.1	gi|408403861|ref|YP_006861844.1|	-	0.037	13.2	0.4	0.086	12.0	0.3	1.6	1	0	0	1	1	1	0	Transcription	factor	zinc-finger
zf-ribbon_3	PF13248.1	gi|408403861|ref|YP_006861844.1|	-	0.042	13.0	1.2	0.25	10.5	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
DUF3797	PF12677.2	gi|408403861|ref|YP_006861844.1|	-	0.081	12.5	0.5	0.16	11.6	0.4	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3797)
TF_Zn_Ribbon	PF08271.7	gi|408403861|ref|YP_006861844.1|	-	0.21	10.9	3.6	0.74	9.1	2.5	1.9	1	1	0	1	1	1	0	TFIIB	zinc-binding
UPF0547	PF10571.4	gi|408403861|ref|YP_006861844.1|	-	0.25	11.0	2.7	1	9.1	0.1	2.4	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
AAA_4	PF04326.9	gi|408403864|ref|YP_006861847.1|	-	1.1e-14	54.5	0.0	2e-14	53.7	0.0	1.4	1	0	0	1	1	1	1	Divergent	AAA	domain
DUF3146	PF11344.3	gi|408403864|ref|YP_006861847.1|	-	0.039	13.3	1.2	0.31	10.5	0.0	2.5	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF3146)
4HB_MCP_1	PF12729.2	gi|408403865|ref|YP_006861848.1|	-	2.8e-10	39.8	0.2	3.5e-10	39.5	0.1	1.0	1	0	0	1	1	1	1	Four	helix	bundle	sensory	module	for	signal	transduction
TarH	PF02203.10	gi|408403865|ref|YP_006861848.1|	-	0.0006	19.6	0.0	0.00074	19.4	0.0	1.1	1	0	0	1	1	1	1	Tar	ligand	binding	domain	homologue
HAMP	PF00672.20	gi|408403866|ref|YP_006861849.1|	-	1.9e-12	47.2	0.0	3e-12	46.5	0.0	1.4	1	0	0	1	1	1	1	HAMP	domain
DUF3713	PF12506.3	gi|408403866|ref|YP_006861849.1|	-	0.1	12.7	0.6	0.14	12.2	0.1	1.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3713)
HATPase_c	PF02518.21	gi|408403867|ref|YP_006861850.1|	-	2e-23	82.2	0.3	3.6e-23	81.3	0.2	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.20	gi|408403867|ref|YP_006861850.1|	-	7.8e-07	28.9	0.7	3.6e-06	26.8	0.0	2.3	3	0	0	3	3	3	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_5	PF14501.1	gi|408403867|ref|YP_006861850.1|	-	0.018	14.7	0.4	0.063	12.9	0.0	1.9	2	0	0	2	2	2	0	GHKL	domain
HATPase_c_3	PF13589.1	gi|408403867|ref|YP_006861850.1|	-	0.054	13.1	0.3	0.076	12.6	0.2	1.4	1	1	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
Response_reg	PF00072.19	gi|408403868|ref|YP_006861851.1|	-	7.2e-10	38.8	0.1	8e-10	38.7	0.1	1.0	1	0	0	1	1	1	1	Response	regulator	receiver	domain
AlaDh_PNT_N	PF05222.10	gi|408403869|ref|YP_006861852.1|	-	3.4e-39	133.9	0.0	7.5e-39	132.8	0.0	1.6	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	N-terminal	domain
AlaDh_PNT_C	PF01262.16	gi|408403869|ref|YP_006861852.1|	-	1.9e-15	56.8	0.2	1.6e-14	53.8	0.2	2.1	1	1	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
NAD_binding_7	PF13241.1	gi|408403869|ref|YP_006861852.1|	-	2.5e-06	27.6	0.4	5.8e-06	26.5	0.3	1.6	1	0	0	1	1	1	1	Putative	NAD(P)-binding
Shikimate_DH	PF01488.15	gi|408403869|ref|YP_006861852.1|	-	1.2e-05	25.3	0.4	2.6e-05	24.3	0.3	1.5	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
2-Hacid_dh_C	PF02826.14	gi|408403869|ref|YP_006861852.1|	-	1.5e-05	24.2	0.3	3.3e-05	23.1	0.1	1.6	2	0	0	2	2	2	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
XdhC_C	PF13478.1	gi|408403869|ref|YP_006861852.1|	-	0.00012	22.3	0.0	0.00033	20.9	0.0	1.7	2	0	0	2	2	2	1	XdhC	Rossmann	domain
TrkA_N	PF02254.13	gi|408403869|ref|YP_006861852.1|	-	0.00029	20.8	0.2	0.00061	19.7	0.1	1.6	1	0	0	1	1	1	1	TrkA-N	domain
F420_oxidored	PF03807.12	gi|408403869|ref|YP_006861852.1|	-	0.00036	20.9	0.7	0.0012	19.1	0.5	2.0	1	1	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
Pyr_redox	PF00070.22	gi|408403869|ref|YP_006861852.1|	-	0.00072	19.9	0.2	0.0025	18.1	0.2	1.9	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
ADH_zinc_N	PF00107.21	gi|408403869|ref|YP_006861852.1|	-	0.004	16.6	0.5	0.019	14.5	0.4	2.3	1	1	0	1	1	1	1	Zinc-binding	dehydrogenase
FAD_binding_3	PF01494.14	gi|408403869|ref|YP_006861852.1|	-	0.0062	15.6	0.0	0.011	14.8	0.0	1.3	1	0	0	1	1	1	1	FAD	binding	domain
DUF2404	PF10296.4	gi|408403869|ref|YP_006861852.1|	-	0.0076	16.3	0.0	4	7.6	0.0	2.9	3	0	0	3	3	3	1	Putative	integral	membrane	protein	conserved	region	(DUF2404)
ELFV_dehydrog	PF00208.16	gi|408403869|ref|YP_006861852.1|	-	0.013	15.1	0.0	0.026	14.1	0.0	1.6	1	0	0	1	1	1	0	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
HI0933_like	PF03486.9	gi|408403869|ref|YP_006861852.1|	-	0.031	12.7	0.3	0.048	12.1	0.2	1.2	1	0	0	1	1	1	0	HI0933-like	protein
OCD_Mu_crystall	PF02423.10	gi|408403869|ref|YP_006861852.1|	-	0.031	13.0	0.0	0.092	11.4	0.0	1.7	2	0	0	2	2	2	0	Ornithine	cyclodeaminase/mu-crystallin	family
DAO	PF01266.19	gi|408403869|ref|YP_006861852.1|	-	0.047	12.5	0.3	0.093	11.6	0.2	1.4	1	0	0	1	1	1	0	FAD	dependent	oxidoreductase
AdoHcyase_NAD	PF00670.16	gi|408403869|ref|YP_006861852.1|	-	0.062	13.1	0.3	0.18	11.6	0.1	1.8	2	0	0	2	2	2	0	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
NAD_Gly3P_dh_N	PF01210.18	gi|408403869|ref|YP_006861852.1|	-	0.071	12.8	0.0	0.19	11.4	0.0	1.8	1	0	0	1	1	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
Glyco_trans_4_2	PF13477.1	gi|408403870|ref|YP_006861853.1|	-	0.015	15.1	0.1	0.018	14.8	0.1	1.1	1	0	0	1	1	1	0	Glycosyl	transferase	4-like
Rieske	PF00355.21	gi|408403871|ref|YP_006861854.1|	-	1.6e-12	46.7	0.0	1.9e-12	46.5	0.0	1.1	1	0	0	1	1	1	1	Rieske	[2Fe-2S]	domain
Rieske_2	PF13806.1	gi|408403871|ref|YP_006861854.1|	-	3e-06	26.8	0.0	3.2e-06	26.7	0.0	1.1	1	0	0	1	1	1	1	Rieske-like	[2Fe-2S]	domain
FMN_red	PF03358.10	gi|408403872|ref|YP_006861855.1|	-	9.9e-05	21.8	0.0	0.00014	21.3	0.0	1.2	1	0	0	1	1	1	1	NADPH-dependent	FMN	reductase
UvrC_HhH_N	PF08459.6	gi|408403875|ref|YP_006861858.1|	-	4.3e-45	153.0	0.0	8.6e-45	152.0	0.0	1.5	1	0	0	1	1	1	1	UvrC	Helix-hairpin-helix	N-terminal
GIY-YIG	PF01541.19	gi|408403875|ref|YP_006861858.1|	-	2e-10	40.8	0.1	5.7e-10	39.4	0.1	1.8	1	0	0	1	1	1	1	GIY-YIG	catalytic	domain
UVR	PF02151.14	gi|408403875|ref|YP_006861858.1|	-	8.7e-06	25.0	1.2	8.7e-06	25.0	0.9	2.4	2	0	0	2	2	2	1	UvrB/uvrC	motif
ABC_tran	PF00005.22	gi|408403876|ref|YP_006861859.1|	-	4.3e-23	82.1	0.2	1e-08	35.5	0.0	4.6	3	1	0	3	3	3	3	ABC	transporter
AAA_21	PF13304.1	gi|408403876|ref|YP_006861859.1|	-	3.3e-11	43.6	7.6	0.00089	19.2	0.0	5.3	4	1	0	4	4	4	2	AAA	domain
SMC_N	PF02463.14	gi|408403876|ref|YP_006861859.1|	-	3.9e-11	42.6	0.1	0.23	10.6	0.0	4.1	4	0	0	4	4	4	4	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.1	gi|408403876|ref|YP_006861859.1|	-	9.5e-10	37.8	0.1	0.0013	18.1	0.0	3.1	3	0	0	3	3	3	2	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.1	gi|408403876|ref|YP_006861859.1|	-	1.5e-08	34.8	0.0	0.00035	20.6	0.0	3.3	3	0	0	3	3	3	2	AAA	ATPase	domain
AAA_25	PF13481.1	gi|408403876|ref|YP_006861859.1|	-	1.2e-07	31.3	0.0	0.034	13.5	0.0	3.9	5	0	0	5	5	4	2	AAA	domain
AAA_14	PF13173.1	gi|408403876|ref|YP_006861859.1|	-	5e-07	29.6	0.1	0.055	13.3	0.0	4.2	4	0	0	4	4	4	2	AAA	domain
DUF258	PF03193.11	gi|408403876|ref|YP_006861859.1|	-	8.6e-07	28.2	0.0	0.018	14.2	0.0	2.4	2	0	0	2	2	2	2	Protein	of	unknown	function,	DUF258
AAA_33	PF13671.1	gi|408403876|ref|YP_006861859.1|	-	1.5e-06	28.1	0.1	0.16	11.8	0.0	3.9	4	0	0	4	4	4	2	AAA	domain
AAA_22	PF13401.1	gi|408403876|ref|YP_006861859.1|	-	1.6e-06	28.3	1.6	0.41	10.8	0.0	4.5	4	0	0	4	4	4	2	AAA	domain
DnaJ_CXXCXGXG	PF00684.14	gi|408403876|ref|YP_006861859.1|	-	3.5e-06	26.9	10.2	0.0044	17.0	0.4	4.5	5	0	0	5	5	4	1	DnaJ	central	domain
AAA_10	PF12846.2	gi|408403876|ref|YP_006861859.1|	-	3.7e-06	26.5	0.1	0.017	14.6	0.0	3.0	2	0	0	2	2	2	2	AAA-like	domain
AAA_17	PF13207.1	gi|408403876|ref|YP_006861859.1|	-	5.3e-06	27.2	6.2	0.089	13.6	0.4	4.6	5	0	0	5	5	4	2	AAA	domain
AAA_15	PF13175.1	gi|408403876|ref|YP_006861859.1|	-	1.2e-05	24.5	0.6	0.19	10.7	0.0	4.4	4	0	0	4	4	4	1	AAA	ATPase	domain
AAA_19	PF13245.1	gi|408403876|ref|YP_006861859.1|	-	1.5e-05	24.6	0.0	0.27	10.9	0.0	3.4	4	0	0	4	4	2	2	Part	of	AAA	domain
NB-ARC	PF00931.17	gi|408403876|ref|YP_006861859.1|	-	1.8e-05	23.7	0.2	0.55	9.0	0.0	3.3	3	0	0	3	3	3	1	NB-ARC	domain
Arch_ATPase	PF01637.13	gi|408403876|ref|YP_006861859.1|	-	1.8e-05	24.5	0.2	0.092	12.4	0.0	3.1	3	0	0	3	3	3	2	Archaeal	ATPase
AAA_18	PF13238.1	gi|408403876|ref|YP_006861859.1|	-	3.1e-05	24.2	0.1	0.36	11.1	0.0	3.2	3	0	0	3	3	2	2	AAA	domain
AAA_23	PF13476.1	gi|408403876|ref|YP_006861859.1|	-	9.1e-05	22.8	9.4	0.0017	18.7	0.3	3.3	4	0	0	4	4	3	2	AAA	domain
APS_kinase	PF01583.15	gi|408403876|ref|YP_006861859.1|	-	9.5e-05	22.1	0.2	0.28	10.8	0.0	2.9	3	0	0	3	3	3	2	Adenylylsulphate	kinase
KaiC	PF06745.8	gi|408403876|ref|YP_006861859.1|	-	0.00013	21.1	0.0	0.71	8.9	0.0	3.1	3	0	0	3	3	3	2	KaiC
DUF2075	PF09848.4	gi|408403876|ref|YP_006861859.1|	-	0.00013	21.0	0.0	0.38	9.6	0.0	3.0	3	0	0	3	3	3	2	Uncharacterized	conserved	protein	(DUF2075)
FtsK_SpoIIIE	PF01580.13	gi|408403876|ref|YP_006861859.1|	-	0.00015	21.3	0.1	0.12	11.7	0.0	2.5	2	0	0	2	2	2	1	FtsK/SpoIIIE	family
NACHT	PF05729.7	gi|408403876|ref|YP_006861859.1|	-	0.00037	20.2	0.0	0.41	10.2	0.0	2.6	2	0	0	2	2	2	1	NACHT	domain
cobW	PF02492.14	gi|408403876|ref|YP_006861859.1|	-	0.00052	19.5	0.3	0.16	11.3	0.0	2.7	2	0	0	2	2	2	1	CobW/HypB/UreG,	nucleotide-binding	domain
T2SE	PF00437.15	gi|408403876|ref|YP_006861859.1|	-	0.0006	18.8	0.0	1	8.2	0.0	2.4	2	0	0	2	2	2	2	Type	II/IV	secretion	system	protein
MMR_HSR1	PF01926.18	gi|408403876|ref|YP_006861859.1|	-	0.00071	19.5	0.0	1.7	8.6	0.0	3.6	3	0	0	3	3	3	1	50S	ribosome-binding	GTPase
Viral_helicase1	PF01443.13	gi|408403876|ref|YP_006861859.1|	-	0.0011	18.5	0.0	0.17	11.3	0.0	3.0	2	0	0	2	2	2	1	Viral	(Superfamily	1)	RNA	helicase
MobB	PF03205.9	gi|408403876|ref|YP_006861859.1|	-	0.0016	18.1	0.2	0.96	9.1	0.0	2.8	3	0	0	3	3	2	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
NTPase_1	PF03266.10	gi|408403876|ref|YP_006861859.1|	-	0.0021	17.7	0.2	1.9	8.1	0.0	3.4	3	0	0	3	3	2	1	NTPase
DAP3	PF10236.4	gi|408403876|ref|YP_006861859.1|	-	0.0061	15.5	0.0	1.4	7.8	0.0	2.6	2	0	0	2	2	2	1	Mitochondrial	ribosomal	death-associated	protein	3
ArgK	PF03308.11	gi|408403876|ref|YP_006861859.1|	-	0.0061	15.3	0.7	3.6	6.2	0.0	3.1	3	0	0	3	3	3	0	ArgK	protein
RNA_helicase	PF00910.17	gi|408403876|ref|YP_006861859.1|	-	0.0065	16.6	0.0	1.2	9.3	0.0	2.7	2	0	0	2	2	2	1	RNA	helicase
AAA_28	PF13521.1	gi|408403876|ref|YP_006861859.1|	-	0.012	15.6	0.0	6.2	6.7	0.0	2.6	2	0	0	2	2	2	0	AAA	domain
SbcCD_C	PF13558.1	gi|408403876|ref|YP_006861859.1|	-	0.015	15.2	0.2	3.2	7.7	0.0	3.8	3	2	0	3	3	3	0	Putative	exonuclease	SbcCD,	C	subunit
AAA_30	PF13604.1	gi|408403876|ref|YP_006861859.1|	-	0.034	13.7	0.0	9.8	5.6	0.0	2.6	2	0	0	2	2	2	0	AAA	domain
BCA_ABC_TP_C	PF12399.3	gi|408403876|ref|YP_006861859.1|	-	0.039	13.6	2.8	0.077	12.7	0.1	2.5	3	0	0	3	3	2	0	Branched-chain	amino	acid	ATP-binding	cassette	transporter
zf-ribbon_3	PF13248.1	gi|408403876|ref|YP_006861859.1|	-	0.052	12.7	1.0	9	5.6	0.1	2.6	2	0	0	2	2	2	0	zinc-ribbon	domain
Sigma54_activat	PF00158.21	gi|408403876|ref|YP_006861859.1|	-	0.073	12.5	0.0	2.1	7.7	0.0	2.4	2	0	0	2	2	2	0	Sigma-54	interaction	domain
zinc_ribbon_2	PF13240.1	gi|408403876|ref|YP_006861859.1|	-	0.088	12.3	3.9	3	7.4	0.3	2.9	2	0	0	2	2	2	0	zinc-ribbon	domain
Zeta_toxin	PF06414.7	gi|408403876|ref|YP_006861859.1|	-	0.11	11.5	0.0	2.6	7.0	0.0	2.4	2	0	0	2	2	2	0	Zeta	toxin
DUF87	PF01935.12	gi|408403876|ref|YP_006861859.1|	-	0.13	12.0	4.5	3.2	7.5	0.0	3.8	4	0	0	4	4	4	0	Domain	of	unknown	function	DUF87
CobU	PF02283.11	gi|408403876|ref|YP_006861859.1|	-	0.67	9.3	2.8	20	4.5	0.0	3.2	3	0	0	3	3	3	0	Cobinamide	kinase	/	cobinamide	phosphate	guanyltransferase
UPF0547	PF10571.4	gi|408403876|ref|YP_006861859.1|	-	1.6	8.4	6.3	8.5	6.1	0.1	2.9	3	0	0	3	3	2	0	Uncharacterised	protein	family	UPF0547
Zn_Tnp_IS1595	PF12760.2	gi|408403876|ref|YP_006861859.1|	-	3.6	7.4	9.9	8.5	6.2	0.0	3.9	4	0	0	4	4	3	0	Transposase	zinc-ribbon	domain
zf-ISL3	PF14690.1	gi|408403876|ref|YP_006861859.1|	-	3.9	7.5	6.6	12	6.0	0.0	3.7	4	0	0	4	4	3	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
PADR1	PF08063.7	gi|408403876|ref|YP_006861859.1|	-	8.2	5.9	7.9	7.5	6.0	0.0	4.2	5	0	0	5	5	5	0	PADR1	(NUC008)	domain
UvrB	PF12344.3	gi|408403877|ref|YP_006861860.1|	-	4.8e-20	70.8	2.7	4.8e-20	70.8	1.9	2.1	2	0	0	2	2	2	1	Ultra-violet	resistance	protein	B
Helicase_C	PF00271.26	gi|408403877|ref|YP_006861860.1|	-	2.2e-14	53.0	0.0	6.7e-14	51.5	0.0	1.8	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.10	gi|408403877|ref|YP_006861860.1|	-	8.6e-11	42.0	0.0	8.6e-11	42.0	0.0	2.5	4	0	0	4	4	4	1	Type	III	restriction	enzyme,	res	subunit
DEAD	PF00270.24	gi|408403877|ref|YP_006861860.1|	-	1.1e-07	31.5	1.6	0.00017	21.1	0.0	3.7	4	0	0	4	4	4	1	DEAD/DEAH	box	helicase
AAA_19	PF13245.1	gi|408403877|ref|YP_006861860.1|	-	0.00018	21.1	0.2	0.0023	17.6	0.0	2.5	2	0	0	2	2	2	1	Part	of	AAA	domain
UVR	PF02151.14	gi|408403877|ref|YP_006861860.1|	-	0.0023	17.4	3.3	0.0023	17.4	2.3	2.8	3	0	0	3	3	3	1	UvrB/uvrC	motif
Kinesin	PF00225.18	gi|408403877|ref|YP_006861860.1|	-	0.0045	15.7	0.0	0.01	14.6	0.0	1.5	1	0	0	1	1	1	1	Kinesin	motor	domain
UB2H	PF14814.1	gi|408403877|ref|YP_006861860.1|	-	0.0089	15.7	0.0	0.027	14.2	0.0	1.9	1	0	0	1	1	1	1	Bifunctional	transglycosylase	second	domain
ATP-synt_ab	PF00006.20	gi|408403877|ref|YP_006861860.1|	-	0.05	13.0	0.0	0.1	12.0	0.0	1.5	1	0	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
Met_synt_B12	PF02965.12	gi|408403877|ref|YP_006861860.1|	-	0.086	12.0	1.8	0.57	9.3	0.1	2.3	2	0	0	2	2	2	0	Vitamin	B12	dependent	methionine	synthase,	activation	domain
ABC_tran	PF00005.22	gi|408403877|ref|YP_006861860.1|	-	0.13	12.5	1.9	0.37	11.0	0.0	2.6	3	0	0	3	3	3	0	ABC	transporter
UvrD-helicase	PF00580.16	gi|408403877|ref|YP_006861860.1|	-	1.6	7.9	13.4	3.1	6.9	0.2	2.6	2	1	0	2	2	2	0	UvrD/REP	helicase	N-terminal	domain
DUF87	PF01935.12	gi|408403877|ref|YP_006861860.1|	-	3	7.5	9.0	0.66	9.7	0.2	2.8	2	1	0	2	2	2	0	Domain	of	unknown	function	DUF87
Halogen_Hydrol	PF10112.4	gi|408403878|ref|YP_006861861.1|	-	0.0049	16.3	0.5	0.0063	15.9	0.4	1.2	1	0	0	1	1	1	1	5-bromo-4-chloroindolyl	phosphate	hydrolysis	protein
DUF4231	PF14015.1	gi|408403878|ref|YP_006861861.1|	-	0.013	15.4	0.6	0.015	15.2	0.4	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4231)
EcsB	PF05975.7	gi|408403878|ref|YP_006861861.1|	-	0.024	13.0	0.5	0.026	12.9	0.4	1.1	1	0	0	1	1	1	0	Bacterial	ABC	transporter	protein	EcsB
MHYT	PF03707.11	gi|408403878|ref|YP_006861861.1|	-	0.025	14.7	0.5	0.034	14.2	0.3	1.3	1	0	0	1	1	1	0	Bacterial	signalling	protein	N	terminal	repeat
Tetraspannin	PF00335.15	gi|408403878|ref|YP_006861861.1|	-	0.058	12.6	0.1	0.074	12.3	0.1	1.2	1	0	0	1	1	1	0	Tetraspanin	family
PgaD	PF13994.1	gi|408403878|ref|YP_006861861.1|	-	0.06	12.8	1.0	0.076	12.5	0.7	1.2	1	1	0	1	1	1	0	PgaD-like	protein
Git3	PF11710.3	gi|408403878|ref|YP_006861861.1|	-	0.075	12.5	1.4	0.079	12.5	0.1	1.6	1	1	1	2	2	2	0	G	protein-coupled	glucose	receptor	regulating	Gpa2
IncA	PF04156.9	gi|408403878|ref|YP_006861861.1|	-	0.081	12.5	0.2	0.1	12.1	0.1	1.1	1	0	0	1	1	1	0	IncA	protein
RSN1_TM	PF13967.1	gi|408403878|ref|YP_006861861.1|	-	0.17	11.4	0.2	0.17	11.4	0.1	1.7	2	0	0	2	2	2	0	Late	exocytosis,	associated	with	Golgi	transport
HD_4	PF13328.1	gi|408403879|ref|YP_006861862.1|	-	2.7e-12	46.6	0.0	4.1e-12	46.0	0.0	1.2	1	0	0	1	1	1	1	HD	domain
ETF	PF01012.16	gi|408403880|ref|YP_006861863.1|	-	2.7e-21	75.9	0.1	3.9e-21	75.4	0.0	1.2	1	0	0	1	1	1	1	Electron	transfer	flavoprotein	domain
ETF_alpha	PF00766.14	gi|408403881|ref|YP_006861864.1|	-	4.4e-29	99.9	0.1	7.9e-29	99.1	0.1	1.4	1	0	0	1	1	1	1	Electron	transfer	flavoprotein	FAD-binding	domain
ETF	PF01012.16	gi|408403881|ref|YP_006861864.1|	-	3e-14	53.0	0.0	5.3e-14	52.2	0.0	1.4	1	0	0	1	1	1	1	Electron	transfer	flavoprotein	domain
DAO	PF01266.19	gi|408403882|ref|YP_006861865.1|	-	1.9e-09	36.9	0.0	0.001	18.0	0.0	2.4	2	1	0	2	2	2	2	FAD	dependent	oxidoreductase
FAD_binding_3	PF01494.14	gi|408403882|ref|YP_006861865.1|	-	6.2e-08	32.0	2.1	0.00052	19.1	1.1	3.2	2	1	0	2	2	2	2	FAD	binding	domain
Pyr_redox_2	PF07992.9	gi|408403882|ref|YP_006861865.1|	-	9.9e-07	28.8	0.1	1.5e-05	24.9	0.0	2.4	2	1	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.9	gi|408403882|ref|YP_006861865.1|	-	1.8e-05	23.4	3.3	3.3e-05	22.5	0.9	2.0	2	0	0	2	2	2	1	HI0933-like	protein
Pyr_redox_3	PF13738.1	gi|408403882|ref|YP_006861865.1|	-	4.5e-05	23.5	0.3	0.00012	22.2	0.0	1.8	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.1	gi|408403882|ref|YP_006861865.1|	-	0.0011	18.9	0.2	0.0075	16.2	0.0	2.4	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
Thi4	PF01946.12	gi|408403882|ref|YP_006861865.1|	-	0.0013	17.9	1.1	0.0021	17.1	0.3	1.7	2	0	0	2	2	2	1	Thi4	family
FAD_binding_2	PF00890.19	gi|408403882|ref|YP_006861865.1|	-	0.002	17.0	0.5	0.002	17.0	0.4	2.1	3	0	0	3	3	3	1	FAD	binding	domain
FAD_oxidored	PF12831.2	gi|408403882|ref|YP_006861865.1|	-	0.0022	17.1	0.1	0.0036	16.4	0.1	1.4	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
DUF2816	PF10992.3	gi|408403882|ref|YP_006861865.1|	-	0.013	15.0	0.1	0.42	10.2	0.1	2.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2816)
PsbU	PF06514.6	gi|408403882|ref|YP_006861865.1|	-	0.018	14.8	0.1	0.055	13.3	0.1	1.8	1	0	0	1	1	1	0	Photosystem	II	12	kDa	extrinsic	protein	(PsbU)
Amino_oxidase	PF01593.19	gi|408403882|ref|YP_006861865.1|	-	0.025	13.6	0.4	4	6.3	0.0	2.4	2	0	0	2	2	2	0	Flavin	containing	amine	oxidoreductase
GIDA	PF01134.17	gi|408403882|ref|YP_006861865.1|	-	0.05	12.4	0.3	0.11	11.3	0.2	1.5	1	0	0	1	1	1	0	Glucose	inhibited	division	protein	A
Lycopene_cycl	PF05834.7	gi|408403882|ref|YP_006861865.1|	-	0.087	11.7	0.8	2.3	7.0	0.3	2.8	3	0	0	3	3	3	0	Lycopene	cyclase	protein
Pyr_redox	PF00070.22	gi|408403882|ref|YP_006861865.1|	-	0.094	13.1	0.2	0.34	11.3	0.2	2.0	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_9	PF13454.1	gi|408403882|ref|YP_006861865.1|	-	0.54	10.0	4.0	2.5	7.8	0.5	3.0	4	0	0	4	4	4	0	FAD-NAD(P)-binding
Fer4	PF00037.22	gi|408403882|ref|YP_006861865.1|	-	1.8	8.2	4.9	0.26	10.9	0.6	1.7	2	0	0	2	2	2	0	4Fe-4S	binding	domain
AhpC-TSA	PF00578.16	gi|408403883|ref|YP_006861866.1|	-	1.1e-23	83.2	0.0	1.4e-23	82.9	0.0	1.1	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.5	gi|408403883|ref|YP_006861866.1|	-	1.9e-16	59.9	0.0	2.4e-16	59.5	0.0	1.1	1	0	0	1	1	1	1	Redoxin
GSHPx	PF00255.14	gi|408403883|ref|YP_006861866.1|	-	2.5e-05	23.5	0.0	3.6e-05	23.0	0.0	1.2	1	0	0	1	1	1	1	Glutathione	peroxidase
Thioredoxin_8	PF13905.1	gi|408403883|ref|YP_006861866.1|	-	0.0019	18.2	0.0	0.0025	17.8	0.0	1.3	1	1	0	1	1	1	1	Thioredoxin-like
SCO1-SenC	PF02630.9	gi|408403883|ref|YP_006861866.1|	-	0.05	13.2	0.0	0.071	12.7	0.0	1.2	1	0	0	1	1	1	0	SCO1/SenC
Radical_SAM	PF04055.16	gi|408403887|ref|YP_006861870.1|	-	6.5e-23	81.7	0.2	1e-22	81.0	0.1	1.3	1	0	0	1	1	1	1	Radical	SAM	superfamily
UPF0004	PF00919.15	gi|408403887|ref|YP_006861870.1|	-	1.3e-16	60.1	0.3	4.4e-16	58.5	0.0	2.0	2	0	0	2	2	2	1	Uncharacterized	protein	family	UPF0004
Tubulin	PF00091.20	gi|408403888|ref|YP_006861871.1|	-	5.2e-13	49.3	0.4	1.4e-11	44.6	0.1	2.1	1	1	1	2	2	2	2	Tubulin/FtsZ	family,	GTPase	domain
zf-trcl	PF13451.1	gi|408403889|ref|YP_006861872.1|	-	0.12	12.0	0.2	0.12	12.0	0.1	2.6	2	1	1	3	3	3	0	Probable	zinc-binding	domain
COX5B	PF01215.14	gi|408403889|ref|YP_006861872.1|	-	0.19	11.3	2.7	0.22	11.1	1.9	1.1	1	0	0	1	1	1	0	Cytochrome	c	oxidase	subunit	Vb
zf-C2H2	PF00096.21	gi|408403889|ref|YP_006861872.1|	-	0.33	11.3	0.5	0.33	11.3	0.4	3.1	3	1	0	3	3	3	0	Zinc	finger,	C2H2	type
zf-tcix	PF14952.1	gi|408403889|ref|YP_006861872.1|	-	0.41	10.0	4.3	5.3	6.4	0.6	2.3	2	0	0	2	2	2	0	Putative	treble-clef,	zinc-finger,	Zn-binding
DUF3795	PF12675.2	gi|408403889|ref|YP_006861872.1|	-	0.47	10.6	7.7	0.65	10.2	5.3	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3795)
HypA	PF01155.14	gi|408403889|ref|YP_006861872.1|	-	8.5	6.1	6.9	0.72	9.5	0.5	1.8	2	0	0	2	2	2	0	Hydrogenase	expression/synthesis	hypA	family
Glycolipid_bind	PF06475.6	gi|408403890|ref|YP_006861873.1|	-	2.4e-06	26.8	0.0	2.4e-06	26.8	0.0	1.0	1	0	0	1	1	1	1	Putative	glycolipid-binding
Ribosomal_L31e	PF01198.14	gi|408403891|ref|YP_006861874.1|	-	1.9e-24	85.1	1.8	2.4e-24	84.7	1.0	1.4	1	1	0	1	1	1	1	Ribosomal	protein	L31e
DUF3664	PF12406.3	gi|408403891|ref|YP_006861874.1|	-	0.061	13.9	5.0	0.092	13.3	3.5	1.4	1	0	0	1	1	1	0	Surface	protein
Ribosomal_L39	PF00832.15	gi|408403892|ref|YP_006861875.1|	-	3.5e-17	61.5	15.8	5.9e-17	60.8	10.9	1.4	1	0	0	1	1	1	1	Ribosomal	L39	protein
Cys_rich_KTR	PF14205.1	gi|408403895|ref|YP_006861878.1|	-	0.0063	15.9	2.9	0.0089	15.4	1.3	1.7	2	0	0	2	2	2	1	Cysteine-rich	KTR
zf-SNAP50_C	PF12251.3	gi|408403895|ref|YP_006861878.1|	-	0.038	13.3	1.5	0.037	13.4	1.1	1.1	1	0	0	1	1	1	0	snRNA-activating	protein	of	50kDa	MW	C	terminal
Elf1	PF05129.8	gi|408403895|ref|YP_006861878.1|	-	0.089	12.4	2.0	0.14	11.8	1.4	1.3	1	1	0	1	1	1	0	Transcription	elongation	factor	Elf1	like
Zn_Tnp_IS1595	PF12760.2	gi|408403895|ref|YP_006861878.1|	-	0.24	11.2	1.9	0.32	10.8	1.3	1.2	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
PHD	PF00628.24	gi|408403895|ref|YP_006861878.1|	-	0.28	10.9	3.2	0.51	10.0	2.2	1.5	1	1	0	1	1	1	0	PHD-finger
Lon_C	PF05362.8	gi|408403896|ref|YP_006861879.1|	-	1.4e-07	31.0	0.6	2.6e-07	30.1	0.4	1.5	1	0	0	1	1	1	1	Lon	protease	(S16)	C-terminal	proteolytic	domain
Reo_sigmaC	PF04582.7	gi|408403896|ref|YP_006861879.1|	-	2.1e-06	27.1	6.0	3.3e-06	26.5	4.1	1.2	1	0	0	1	1	1	1	Reovirus	sigma	C	capsid	protein
TMF_DNA_bd	PF12329.3	gi|408403896|ref|YP_006861879.1|	-	1.8e-05	24.4	12.3	1.8e-05	24.4	8.6	2.3	1	1	1	2	2	2	1	TATA	element	modulatory	factor	1	DNA	binding
Laminin_I	PF06008.9	gi|408403896|ref|YP_006861879.1|	-	6.3e-05	22.4	15.5	8.6e-05	21.9	10.8	1.1	1	0	0	1	1	1	1	Laminin	Domain	I
IncA	PF04156.9	gi|408403896|ref|YP_006861879.1|	-	0.0011	18.6	17.1	0.0019	17.8	11.8	1.4	1	0	0	1	1	1	1	IncA	protein
ADIP	PF11559.3	gi|408403896|ref|YP_006861879.1|	-	0.0026	17.6	16.8	0.0048	16.7	11.6	1.4	1	1	0	1	1	1	1	Afadin-	and	alpha	-actinin-Binding
DUF869	PF05911.6	gi|408403896|ref|YP_006861879.1|	-	0.0039	15.5	10.6	0.0051	15.1	7.4	1.1	1	0	0	1	1	1	1	Plant	protein	of	unknown	function	(DUF869)
APG6	PF04111.7	gi|408403896|ref|YP_006861879.1|	-	0.0044	16.1	11.8	0.0059	15.6	8.2	1.1	1	0	0	1	1	1	1	Autophagy	protein	Apg6
Atg14	PF10186.4	gi|408403896|ref|YP_006861879.1|	-	0.0051	15.8	11.9	0.009	14.9	8.3	1.3	1	0	0	1	1	1	1	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
DivIC	PF04977.10	gi|408403896|ref|YP_006861879.1|	-	0.0083	15.5	21.2	0.6	9.6	4.2	3.4	1	1	2	3	3	3	2	Septum	formation	initiator
DUF4618	PF15397.1	gi|408403896|ref|YP_006861879.1|	-	0.01	15.2	8.7	0.016	14.5	6.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4618)
AAA_13	PF13166.1	gi|408403896|ref|YP_006861879.1|	-	0.01	14.3	9.5	0.016	13.6	6.6	1.3	1	0	0	1	1	1	0	AAA	domain
Med9	PF07544.8	gi|408403896|ref|YP_006861879.1|	-	0.011	15.4	8.0	0.011	15.4	5.5	2.4	1	1	0	2	2	2	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
CENP-F_leu_zip	PF10473.4	gi|408403896|ref|YP_006861879.1|	-	0.016	15.0	15.7	0.023	14.5	10.3	1.5	1	1	0	1	1	1	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
CALCOCO1	PF07888.6	gi|408403896|ref|YP_006861879.1|	-	0.018	13.3	9.3	0.025	12.8	6.4	1.1	1	0	0	1	1	1	0	Calcium	binding	and	coiled-coil	domain	(CALCOCO1)	like
SlyX	PF04102.7	gi|408403896|ref|YP_006861879.1|	-	0.027	14.8	22.3	0.068	13.5	7.1	3.3	1	1	2	3	3	3	0	SlyX
ATG16	PF08614.6	gi|408403896|ref|YP_006861879.1|	-	0.032	14.0	18.9	0.14	11.9	2.8	2.1	1	1	1	2	2	2	0	Autophagy	protein	16	(ATG16)
Spc7	PF08317.6	gi|408403896|ref|YP_006861879.1|	-	0.034	12.8	17.8	0.34	9.5	12.5	1.9	1	1	0	1	1	1	0	Spc7	kinetochore	protein
Filament	PF00038.16	gi|408403896|ref|YP_006861879.1|	-	0.074	12.5	16.2	0.29	10.5	10.4	1.8	1	1	1	2	2	2	0	Intermediate	filament	protein
GAS	PF13851.1	gi|408403896|ref|YP_006861879.1|	-	0.093	11.9	12.3	0.16	11.1	8.5	1.3	1	0	0	1	1	1	0	Growth-arrest	specific	micro-tubule	binding
Tropomyosin_1	PF12718.2	gi|408403896|ref|YP_006861879.1|	-	0.15	11.9	16.0	0.28	11.0	11.1	1.4	1	0	0	1	1	1	0	Tropomyosin	like
DUF4140	PF13600.1	gi|408403896|ref|YP_006861879.1|	-	0.19	12.1	14.8	0.73	10.3	6.9	2.5	1	1	1	2	2	2	0	N-terminal	domain	of	unknown	function	(DUF4140)
DUF2968	PF11180.3	gi|408403896|ref|YP_006861879.1|	-	0.21	10.9	20.3	0.31	10.4	14.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2968)
APCDDC	PF14921.1	gi|408403896|ref|YP_006861879.1|	-	0.37	10.0	1.9	0.63	9.3	1.3	1.3	1	0	0	1	1	1	0	Adenomatosis	polyposis	coli	down-regulated	1
MscS_porin	PF12795.2	gi|408403896|ref|YP_006861879.1|	-	0.46	9.7	30.6	0.67	9.2	9.9	2.1	1	1	1	2	2	2	0	Mechanosensitive	ion	channel	porin	domain
ERM	PF00769.14	gi|408403896|ref|YP_006861879.1|	-	0.54	9.7	16.4	0.8	9.1	11.4	1.1	1	0	0	1	1	1	0	Ezrin/radixin/moesin	family
DUF1319	PF07028.6	gi|408403896|ref|YP_006861879.1|	-	0.55	10.4	10.4	0.54	10.4	1.2	2.3	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1319)
V_ATPase_I	PF01496.14	gi|408403896|ref|YP_006861879.1|	-	0.63	7.8	4.7	0.88	7.3	3.3	1.2	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
DUF3584	PF12128.3	gi|408403896|ref|YP_006861879.1|	-	0.86	6.8	14.4	1.1	6.4	10.0	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
DUF3138	PF11336.3	gi|408403896|ref|YP_006861879.1|	-	1.1	7.3	8.5	1.8	6.6	5.7	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3138)
Fib_alpha	PF08702.5	gi|408403896|ref|YP_006861879.1|	-	1.2	9.2	15.0	3.3	7.8	8.3	2.1	1	1	1	2	2	2	0	Fibrinogen	alpha/beta	chain	family
Fmp27_WPPW	PF10359.4	gi|408403896|ref|YP_006861879.1|	-	1.2	7.4	6.4	1.7	6.9	4.4	1.2	1	0	0	1	1	1	0	RNA	pol	II	promoter	Fmp27	protein	domain
DUF812	PF05667.6	gi|408403896|ref|YP_006861879.1|	-	1.2	7.5	14.5	2.4	6.5	10.1	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF812)
Mod_r	PF07200.8	gi|408403896|ref|YP_006861879.1|	-	1.4	8.8	15.4	0.24	11.3	6.3	2.0	1	1	1	2	2	2	0	Modifier	of	rudimentary	(Mod(r))	protein
DUF4200	PF13863.1	gi|408403896|ref|YP_006861879.1|	-	1.4	8.8	16.9	7.2	6.5	11.7	2.1	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4200)
TPR_MLP1_2	PF07926.7	gi|408403896|ref|YP_006861879.1|	-	1.5	8.5	19.6	1.1	9.0	8.7	2.3	1	1	1	2	2	2	0	TPR/MLP1/MLP2-like	protein
TBPIP	PF07106.8	gi|408403896|ref|YP_006861879.1|	-	1.5	8.3	13.8	0.54	9.7	7.1	1.8	1	1	1	2	2	2	0	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
DUF724	PF05266.9	gi|408403896|ref|YP_006861879.1|	-	1.5	8.3	10.5	1.2	8.6	6.0	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF724)
Macoilin	PF09726.4	gi|408403896|ref|YP_006861879.1|	-	1.5	6.9	7.2	2.6	6.2	5.0	1.4	1	0	0	1	1	1	0	Transmembrane	protein
Bap31	PF05529.7	gi|408403896|ref|YP_006861879.1|	-	2.4	7.5	13.1	61	2.9	9.1	2.2	1	1	0	1	1	1	0	B-cell	receptor-associated	protein	31-like
PspA_IM30	PF04012.7	gi|408403896|ref|YP_006861879.1|	-	3.5	6.9	20.3	17	4.6	14.1	1.8	1	1	0	1	1	1	0	PspA/IM30	family
zf-C4H2	PF10146.4	gi|408403896|ref|YP_006861879.1|	-	3.6	7.5	6.3	5.3	6.9	4.3	1.2	1	0	0	1	1	1	0	Zinc	finger-containing	protein
BRE1	PF08647.6	gi|408403896|ref|YP_006861879.1|	-	3.8	7.5	14.7	7.1	6.6	10.2	1.5	1	1	0	1	1	1	0	BRE1	E3	ubiquitin	ligase
DUF1423	PF07227.6	gi|408403896|ref|YP_006861879.1|	-	4.4	5.8	9.4	11	4.4	6.5	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1423)
bZIP_1	PF00170.16	gi|408403896|ref|YP_006861879.1|	-	5.3	7.0	11.3	0.74	9.8	0.7	3.1	1	1	3	4	4	4	0	bZIP	transcription	factor
DUF3450	PF11932.3	gi|408403896|ref|YP_006861879.1|	-	6.7	5.8	21.5	1.4e+02	1.5	15.0	2.0	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3450)
HrpB7	PF09486.5	gi|408403896|ref|YP_006861879.1|	-	6.9	6.5	15.6	87	3.0	10.9	2.2	1	1	0	1	1	1	0	Bacterial	type	III	secretion	protein	(HrpB7)
HlyD	PF00529.15	gi|408403896|ref|YP_006861879.1|	-	7.1	5.8	22.4	12	5.0	15.5	1.3	1	0	0	1	1	1	0	HlyD	family	secretion	protein
DUF2730	PF10805.3	gi|408403896|ref|YP_006861879.1|	-	7.4	6.3	11.4	1.8	8.3	2.7	2.3	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2730)
FemAB	PF02388.11	gi|408403896|ref|YP_006861879.1|	-	7.9	5.0	8.1	13	4.3	5.6	1.4	1	1	0	1	1	1	0	FemAB	family
Kinetocho_Slk19	PF12709.2	gi|408403896|ref|YP_006861879.1|	-	8.8	6.4	11.0	14	5.8	0.8	3.3	2	1	1	3	3	3	0	Central	kinetochore-associated
Flavin_Reduct	PF01613.13	gi|408403898|ref|YP_006861881.1|	-	1.3e-26	93.3	0.0	2e-26	92.6	0.0	1.2	1	0	0	1	1	1	1	Flavin	reductase	like	domain
DUF447	PF04289.7	gi|408403898|ref|YP_006861881.1|	-	0.11	12.0	0.0	0.27	10.7	0.0	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF447)
Aminotran_3	PF00202.16	gi|408403899|ref|YP_006861882.1|	-	4.9e-57	193.3	0.0	6.3e-57	192.9	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class-III
YjgF_endoribonc	PF14588.1	gi|408403903|ref|YP_006861886.1|	-	6.2e-40	136.5	0.0	6.8e-40	136.4	0.0	1.0	1	0	0	1	1	1	1	YjgF/chorismate_mutase-like,	putative	endoribonuclease
Ribonuc_L-PSP	PF01042.16	gi|408403903|ref|YP_006861886.1|	-	1.4e-19	69.9	0.0	1.9e-19	69.5	0.0	1.1	1	0	0	1	1	1	1	Endoribonuclease	L-PSP
DHHA1	PF02272.14	gi|408403904|ref|YP_006861887.1|	-	1.8e-12	46.7	0.1	4.5e-12	45.5	0.1	1.7	1	0	0	1	1	1	1	DHHA1	domain
DHH	PF01368.15	gi|408403904|ref|YP_006861887.1|	-	1.4e-05	24.7	1.3	2.7e-05	23.8	0.7	1.7	1	1	0	1	1	1	1	DHH	family
HMGL-like	PF00682.14	gi|408403904|ref|YP_006861887.1|	-	0.03	14.0	0.5	0.064	12.9	0.3	1.7	1	1	0	1	1	1	0	HMGL-like
TMEM151	PF14857.1	gi|408403904|ref|YP_006861887.1|	-	0.091	11.3	0.0	0.14	10.7	0.0	1.2	1	0	0	1	1	1	0	TMEM151	family
DUF2247	PF10004.4	gi|408403904|ref|YP_006861887.1|	-	0.13	11.9	0.2	2.2	7.9	0.0	2.3	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2247)
Thioredox_DsbH	PF03190.10	gi|408403905|ref|YP_006861888.1|	-	2.7e-76	254.8	0.0	7.6e-76	253.3	0.0	1.7	2	0	0	2	2	2	1	Protein	of	unknown	function,	DUF255
Thioredoxin_7	PF13899.1	gi|408403905|ref|YP_006861888.1|	-	1.1e-13	50.9	0.0	2.6e-13	49.8	0.0	1.7	1	0	0	1	1	1	1	Thioredoxin-like
Glyco_hydro_88	PF07470.8	gi|408403905|ref|YP_006861888.1|	-	6.4e-11	41.8	4.4	2.9e-05	23.2	0.0	3.4	2	1	1	3	3	3	2	Glycosyl	Hydrolase	Family	88
C5-epim_C	PF06662.8	gi|408403905|ref|YP_006861888.1|	-	4.2e-10	39.2	6.7	0.00024	20.4	0.1	4.0	4	0	0	4	4	4	3	D-glucuronyl	C5-epimerase	C-terminus
Glyco_hydro_76	PF03663.9	gi|408403905|ref|YP_006861888.1|	-	3e-09	36.7	2.0	0.00076	18.9	1.0	3.4	3	1	0	3	3	3	2	Glycosyl	hydrolase	family	76
DUF1680	PF07944.7	gi|408403905|ref|YP_006861888.1|	-	0.00017	19.9	2.3	0.025	12.8	0.3	3.1	2	1	1	3	3	3	2	Putative	glycosyl	hydrolase	of	unknown	function	(DUF1680)
Glyco_hydro_47	PF01532.15	gi|408403905|ref|YP_006861888.1|	-	0.00018	20.3	0.7	0.6	8.7	0.1	3.2	2	1	0	2	2	2	1	Glycosyl	hydrolase	family	47
Thioredoxin_2	PF13098.1	gi|408403905|ref|YP_006861888.1|	-	0.00045	20.3	0.5	0.0022	18.1	0.0	2.4	3	0	0	3	3	3	1	Thioredoxin-like	domain
GlcNAc_2-epim	PF07221.6	gi|408403905|ref|YP_006861888.1|	-	0.0098	14.9	5.5	1.4	7.8	0.1	3.2	3	1	0	3	3	3	2	N-acylglucosamine	2-epimerase	(GlcNAc	2-epimerase)
PMBR	PF09373.5	gi|408403905|ref|YP_006861888.1|	-	0.12	12.3	0.8	7.8	6.6	0.0	3.2	4	0	0	4	4	4	0	Pseudomurein-binding	repeat
BicD	PF09730.4	gi|408403906|ref|YP_006861889.1|	-	0.0022	16.4	0.1	0.0025	16.2	0.1	1.0	1	0	0	1	1	1	1	Microtubule-associated	protein	Bicaudal-D
KdpD	PF02702.12	gi|408403906|ref|YP_006861889.1|	-	0.09	11.9	0.2	0.12	11.5	0.2	1.0	1	0	0	1	1	1	0	Osmosensitive	K+	channel	His	kinase	sensor	domain
Pyridox_ox_2	PF12900.2	gi|408403908|ref|YP_006861891.1|	-	7e-25	87.5	0.0	8.5e-25	87.2	0.0	1.1	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Pyridox_oxidase	PF01243.15	gi|408403908|ref|YP_006861891.1|	-	1.3e-18	66.7	0.0	2.5e-18	65.8	0.0	1.5	1	1	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
FMN_bind_2	PF04299.7	gi|408403908|ref|YP_006861891.1|	-	8.9e-06	25.3	0.0	1.4e-05	24.6	0.0	1.3	1	0	0	1	1	1	1	Putative	FMN-binding	domain
ChaB	PF06150.7	gi|408403909|ref|YP_006861892.1|	-	0.017	14.9	0.2	0.047	13.4	0.1	1.7	2	0	0	2	2	2	0	ChaB
SAE2	PF08573.5	gi|408403909|ref|YP_006861892.1|	-	0.066	13.9	2.8	0.073	13.7	1.5	1.5	1	1	1	2	2	2	0	DNA	repair	protein	endonuclease	SAE2/CtIP	C-terminus
Spt4	PF06093.8	gi|408403909|ref|YP_006861892.1|	-	0.15	11.9	0.4	0.25	11.2	0.3	1.4	1	0	0	1	1	1	0	Spt4/RpoE2	zinc	finger
HTH_45	PF14947.1	gi|408403910|ref|YP_006861893.1|	-	3.1e-17	62.1	1.0	3.4e-17	62.0	0.7	1.0	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF4364	PF14277.1	gi|408403910|ref|YP_006861893.1|	-	6.4e-05	22.6	0.1	7.5e-05	22.3	0.1	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4364)
DUF2250	PF10007.4	gi|408403910|ref|YP_006861893.1|	-	0.021	14.7	0.2	0.32	10.9	0.1	2.0	1	1	1	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_45	PF14947.1	gi|408403912|ref|YP_006861895.1|	-	5.4e-09	35.7	0.0	6.6e-09	35.4	0.0	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
MarR	PF01047.17	gi|408403912|ref|YP_006861895.1|	-	0.00082	19.0	0.0	0.0011	18.5	0.0	1.3	1	0	0	1	1	1	1	MarR	family
FeoC	PF09012.5	gi|408403912|ref|YP_006861895.1|	-	0.00084	18.9	0.0	0.001	18.7	0.0	1.1	1	0	0	1	1	1	1	FeoC	like	transcriptional	regulator
HTH_24	PF13412.1	gi|408403912|ref|YP_006861895.1|	-	0.00084	18.6	0.0	0.0012	18.2	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.14	gi|408403912|ref|YP_006861895.1|	-	0.0042	16.7	0.0	0.0055	16.3	0.0	1.1	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_5	PF01022.15	gi|408403912|ref|YP_006861895.1|	-	0.0055	16.3	0.1	0.0079	15.8	0.0	1.2	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
Rrf2	PF02082.15	gi|408403912|ref|YP_006861895.1|	-	0.026	14.6	0.0	0.034	14.2	0.0	1.1	1	0	0	1	1	1	0	Transcriptional	regulator
MarR_2	PF12802.2	gi|408403912|ref|YP_006861895.1|	-	0.059	13.0	0.0	0.079	12.6	0.0	1.2	1	0	0	1	1	1	0	MarR	family
PadR	PF03551.9	gi|408403913|ref|YP_006861896.1|	-	1.7e-07	30.9	0.0	7.8e-07	28.7	0.0	2.1	2	1	1	3	3	3	1	Transcriptional	regulator	PadR-like	family
HTH_45	PF14947.1	gi|408403913|ref|YP_006861896.1|	-	7.9e-05	22.3	0.0	0.00017	21.3	0.0	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF1104	PF06518.6	gi|408403913|ref|YP_006861896.1|	-	0.0031	17.5	0.6	0.0055	16.8	0.5	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1104)
HTH_27	PF13463.1	gi|408403913|ref|YP_006861896.1|	-	0.038	14.3	0.1	0.21	11.9	0.0	2.1	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
HemN_C	PF06969.11	gi|408403913|ref|YP_006861896.1|	-	0.066	13.2	0.4	0.19	11.8	0.0	1.9	2	0	0	2	2	2	0	HemN	C-terminal	domain
DUF1525	PF07511.6	gi|408403913|ref|YP_006861896.1|	-	0.11	12.5	0.3	0.16	12.0	0.2	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1525)
Na_H_Exchanger	PF00999.16	gi|408403915|ref|YP_006861898.1|	-	3.6e-71	239.6	50.6	4.6e-71	239.3	35.1	1.0	1	0	0	1	1	1	1	Sodium/hydrogen	exchanger	family
Regulator_TrmB	PF11495.3	gi|408403916|ref|YP_006861899.1|	-	0.061	12.2	0.0	0.079	11.9	0.0	1.1	1	0	0	1	1	1	0	Archaeal	transcriptional	regulator	TrmB
DUF2326	PF10088.4	gi|408403916|ref|YP_006861899.1|	-	0.15	11.6	0.0	0.24	11.0	0.0	1.3	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2326)
Response_reg	PF00072.19	gi|408403917|ref|YP_006861900.1|	-	6.6e-21	74.4	0.1	7.5e-21	74.2	0.1	1.0	1	0	0	1	1	1	1	Response	regulator	receiver	domain
FTCD_C	PF04961.7	gi|408403917|ref|YP_006861900.1|	-	0.043	13.2	0.0	0.05	13.0	0.0	1.1	1	0	0	1	1	1	0	Formiminotransferase-cyclodeaminase
Cation_efflux	PF01545.16	gi|408403918|ref|YP_006861901.1|	-	3.5e-49	167.4	6.0	3.8e-49	167.2	4.1	1.0	1	0	0	1	1	1	1	Cation	efflux	family
Rab5ip	PF07019.7	gi|408403918|ref|YP_006861901.1|	-	0.26	11.4	0.1	0.26	11.4	0.1	3.1	2	2	0	3	3	3	0	Rab5-interacting	protein	(Rab5ip)
Cation_ATPase_C	PF00689.16	gi|408403918|ref|YP_006861901.1|	-	0.28	10.6	6.4	0.099	12.1	2.1	1.9	2	0	0	2	2	2	0	Cation	transporting	ATPase,	C-terminus
MASE1	PF05231.9	gi|408403918|ref|YP_006861901.1|	-	5.3	5.9	11.9	0.22	10.5	4.2	1.6	2	0	0	2	2	2	0	MASE1
YqhR	PF11085.3	gi|408403921|ref|YP_006861904.1|	-	6.8	6.1	14.2	2	7.8	5.1	2.6	1	1	2	3	3	3	0	Conserved	membrane	protein	YqhR
DUF2937	PF11157.3	gi|408403922|ref|YP_006861905.1|	-	0.13	11.5	1.9	0.16	11.2	0.1	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2937)
Thioredoxin_4	PF13462.1	gi|408403924|ref|YP_006861907.1|	-	1e-30	106.9	0.0	1.4e-30	106.4	0.0	1.2	1	0	0	1	1	1	1	Thioredoxin
DSBA	PF01323.15	gi|408403924|ref|YP_006861907.1|	-	1.2e-14	54.2	0.0	6.6e-13	48.6	0.0	2.2	1	1	0	1	1	1	1	DSBA-like	thioredoxin	domain
Thioredoxin_2	PF13098.1	gi|408403924|ref|YP_006861907.1|	-	3.1e-07	30.5	0.0	1.2e-06	28.6	0.0	1.9	1	1	0	1	1	1	1	Thioredoxin-like	domain
DUF948	PF06103.6	gi|408403925|ref|YP_006861908.1|	-	1.1e-05	25.1	12.0	1.5	8.7	0.1	6.1	4	2	2	6	6	6	2	Bacterial	protein	of	unknown	function	(DUF948)
Spc7	PF08317.6	gi|408403925|ref|YP_006861908.1|	-	5e-05	22.1	29.5	0.00068	18.3	3.7	3.1	2	1	0	3	3	3	2	Spc7	kinetochore	protein
DegS	PF05384.6	gi|408403925|ref|YP_006861908.1|	-	0.0062	15.7	1.1	0.0062	15.7	0.7	3.9	3	1	0	3	3	3	2	Sensor	protein	DegS
Allexi_40kDa	PF05549.6	gi|408403925|ref|YP_006861908.1|	-	0.016	14.5	0.6	0.016	14.5	0.4	3.7	1	1	3	4	4	4	0	Allexivirus	40kDa	protein
Cob_adeno_trans	PF01923.13	gi|408403925|ref|YP_006861908.1|	-	0.022	14.5	1.3	0.022	14.5	0.9	3.1	2	1	0	3	3	3	0	Cobalamin	adenosyltransferase
DUF4140	PF13600.1	gi|408403925|ref|YP_006861908.1|	-	0.029	14.8	1.4	0.029	14.8	1.0	4.9	4	3	1	5	5	4	0	N-terminal	domain	of	unknown	function	(DUF4140)
Semialdhyde_dhC	PF02774.13	gi|408403925|ref|YP_006861908.1|	-	0.045	13.5	1.3	0.26	11.1	0.2	2.5	2	1	1	3	3	3	0	Semialdehyde	dehydrogenase,	dimerisation	domain
V-SNARE	PF05008.10	gi|408403925|ref|YP_006861908.1|	-	0.046	13.8	0.7	0.046	13.8	0.5	4.7	5	1	0	5	5	4	0	Vesicle	transport	v-SNARE	protein	N-terminus
UBN2	PF14223.1	gi|408403925|ref|YP_006861908.1|	-	0.06	13.1	12.7	0.087	12.6	0.3	4.2	2	2	0	3	3	3	0	gag-polypeptide	of	LTR	copia-type
Baculo_PEP_C	PF04513.7	gi|408403925|ref|YP_006861908.1|	-	0.2	11.4	12.8	0.19	11.5	0.8	4.7	2	1	3	5	5	5	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
DUF1664	PF07889.7	gi|408403925|ref|YP_006861908.1|	-	0.26	11.0	17.9	3.2	7.5	1.1	5.2	3	2	3	6	6	6	0	Protein	of	unknown	function	(DUF1664)
Flagellin_N	PF00669.15	gi|408403925|ref|YP_006861908.1|	-	0.27	11.0	5.5	0.12	12.1	1.3	2.4	2	0	0	2	2	2	0	Bacterial	flagellin	N-terminal	helical	region
UBN2_2	PF14227.1	gi|408403925|ref|YP_006861908.1|	-	0.27	10.7	4.4	1.9	8.0	0.1	3.6	3	0	0	3	3	3	0	gag-polypeptide	of	LTR	copia-type
Tropomyosin_1	PF12718.2	gi|408403925|ref|YP_006861908.1|	-	0.28	11.0	26.4	0.55	10.0	3.6	3.6	3	0	0	3	3	3	0	Tropomyosin	like
Fib_alpha	PF08702.5	gi|408403925|ref|YP_006861908.1|	-	0.45	10.6	18.6	1.2	9.2	1.6	4.3	1	1	2	4	4	4	0	Fibrinogen	alpha/beta	chain	family
RGCC	PF15151.1	gi|408403925|ref|YP_006861908.1|	-	0.67	10.3	7.7	6.9	7.1	0.0	3.7	4	0	0	4	4	4	0	Response	gene	to	complement	32	protein	family
Reo_sigmaC	PF04582.7	gi|408403925|ref|YP_006861908.1|	-	0.71	9.0	6.9	1.2	8.2	0.3	2.9	1	1	0	2	2	2	0	Reovirus	sigma	C	capsid	protein
WXG100	PF06013.7	gi|408403925|ref|YP_006861908.1|	-	0.72	9.9	21.9	0.056	13.4	0.8	5.9	5	3	0	5	5	5	0	Proteins	of	100	residues	with	WXG
DUF2203	PF09969.4	gi|408403925|ref|YP_006861908.1|	-	0.95	9.6	20.5	1.4	9.1	0.4	5.0	1	1	3	4	4	4	0	Uncharacterized	conserved	protein	(DUF2203)
DUF2408	PF10303.4	gi|408403925|ref|YP_006861908.1|	-	1	9.4	18.4	8	6.5	0.2	4.2	2	2	1	3	3	3	0	Protein	of	unknown	function	(DUF2408)
FlaC_arch	PF05377.6	gi|408403925|ref|YP_006861908.1|	-	1.2	9.0	17.5	0.3	11.0	0.2	5.7	6	1	0	6	6	6	0	Flagella	accessory	protein	C	(FlaC)
eIF3_N	PF09440.5	gi|408403925|ref|YP_006861908.1|	-	1.6	8.9	11.0	1.7	8.7	0.8	3.8	3	1	1	4	4	4	0	eIF3	subunit	6	N	terminal	domain
ADIP	PF11559.3	gi|408403925|ref|YP_006861908.1|	-	2.4	8.0	24.8	0.53	10.1	4.0	3.9	2	2	0	3	3	3	0	Afadin-	and	alpha	-actinin-Binding
Tweety	PF04906.8	gi|408403925|ref|YP_006861908.1|	-	4.4	5.6	7.1	0.29	9.4	0.2	2.4	3	1	0	3	3	3	0	Tweety
IncA	PF04156.9	gi|408403925|ref|YP_006861908.1|	-	6	6.4	34.7	4.1	6.9	6.5	4.0	1	1	2	3	3	3	0	IncA	protein
DUF342	PF03961.8	gi|408403925|ref|YP_006861908.1|	-	6.5	5.0	21.6	0.038	12.4	3.4	3.0	1	1	1	3	3	3	0	Protein	of	unknown	function	(DUF342)
Sec8_exocyst	PF04048.9	gi|408403925|ref|YP_006861908.1|	-	6.7	6.3	20.8	3.8	7.1	0.4	4.9	2	1	2	5	5	5	0	Sec8	exocyst	complex	component	specific	domain
FliJ	PF02050.11	gi|408403925|ref|YP_006861908.1|	-	8.3	6.4	27.8	0.24	11.4	1.3	4.7	1	1	2	4	4	4	0	Flagellar	FliJ	protein
DivIVA	PF05103.8	gi|408403925|ref|YP_006861908.1|	-	8.4	6.4	28.0	0.24	11.4	0.4	4.3	3	1	1	4	4	4	0	DivIVA	protein
FUN14	PF04930.10	gi|408403927|ref|YP_006861910.1|	-	4.3e-20	71.8	7.1	5.1e-20	71.6	4.9	1.1	1	0	0	1	1	1	1	FUN14	family
O-antigen_lig	PF13425.1	gi|408403927|ref|YP_006861910.1|	-	0.062	13.2	9.6	0.1	12.5	4.6	1.9	1	1	1	2	2	2	0	O-antigen	ligase	like	membrane	protein
SPC12	PF06645.8	gi|408403927|ref|YP_006861910.1|	-	0.9	9.3	4.8	0.69	9.7	1.8	1.9	2	0	0	2	2	2	0	Microsomal	signal	peptidase	12	kDa	subunit	(SPC12)
DUF4341	PF14241.1	gi|408403927|ref|YP_006861910.1|	-	4	7.2	11.5	2.2	8.0	2.4	2.7	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4341)
DUF3482	PF11981.3	gi|408403927|ref|YP_006861910.1|	-	7.7	5.6	7.7	0.46	9.6	1.0	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3482)
RVT_3	PF13456.1	gi|408403928|ref|YP_006861911.1|	-	9.3e-20	70.2	0.1	1.2e-19	69.8	0.0	1.1	1	0	0	1	1	1	1	Reverse	transcriptase-like
RNase_H	PF00075.19	gi|408403928|ref|YP_006861911.1|	-	1.2e-11	45.0	0.0	1.4e-11	44.8	0.0	1.1	1	0	0	1	1	1	1	RNase	H
DM13	PF10517.4	gi|408403929|ref|YP_006861912.1|	-	2.1e-26	92.4	0.0	2.5e-26	92.1	0.0	1.1	1	0	0	1	1	1	1	Electron	transfer	DM13
MFS_1	PF07690.11	gi|408403930|ref|YP_006861913.1|	-	0.011	14.4	0.6	0.011	14.4	0.4	1.0	1	0	0	1	1	1	0	Major	Facilitator	Superfamily
DUF3054	PF11255.3	gi|408403932|ref|YP_006861915.1|	-	0.057	13.2	0.7	0.064	13.0	0.5	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3054)
FIST_C	PF10442.4	gi|408403933|ref|YP_006861916.1|	-	0.036	13.9	0.0	0.044	13.7	0.0	1.1	1	0	0	1	1	1	0	FIST	C	domain
TetR_N	PF00440.18	gi|408403934|ref|YP_006861917.1|	-	1.1e-19	69.7	0.5	4.4e-19	67.8	0.1	2.0	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	tetR	family
TetR_C_6	PF13977.1	gi|408403934|ref|YP_006861917.1|	-	1.2e-11	44.6	0.0	2.6e-11	43.5	0.0	1.5	1	0	0	1	1	1	1	Bacterial	transcriptional	repressor
HTH_22	PF13309.1	gi|408403934|ref|YP_006861917.1|	-	0.0074	16.0	0.0	0.03	14.0	0.0	2.1	2	0	0	2	2	2	1	HTH	domain
HTH_23	PF13384.1	gi|408403934|ref|YP_006861917.1|	-	0.023	14.3	0.1	0.079	12.6	0.0	2.0	2	0	0	2	2	2	0	Homeodomain-like	domain
UBA_3	PF09288.5	gi|408403934|ref|YP_006861917.1|	-	0.043	13.4	0.0	0.11	12.0	0.0	1.7	1	0	0	1	1	1	0	Fungal	ubiquitin-associated	domain
HTH_10	PF04967.7	gi|408403934|ref|YP_006861917.1|	-	0.05	13.1	0.0	0.18	11.3	0.0	2.0	1	0	0	1	1	1	0	HTH	DNA	binding	domain
HTH_24	PF13412.1	gi|408403934|ref|YP_006861917.1|	-	0.057	12.8	0.0	0.14	11.5	0.0	1.6	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_17	PF12728.2	gi|408403934|ref|YP_006861917.1|	-	0.06	13.5	0.0	0.19	12.0	0.0	1.8	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_7	PF02796.10	gi|408403934|ref|YP_006861917.1|	-	0.086	12.7	0.0	0.27	11.1	0.0	1.9	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	resolvase
HTH_AsnC-type	PF13404.1	gi|408403934|ref|YP_006861917.1|	-	0.1	12.1	0.0	0.3	10.6	0.0	1.8	2	0	0	2	2	2	0	AsnC-type	helix-turn-helix	domain
Pro_isomerase	PF00160.16	gi|408403935|ref|YP_006861918.1|	-	6.6e-53	179.0	0.1	7.5e-53	178.9	0.0	1.0	1	0	0	1	1	1	1	Cyclophilin	type	peptidyl-prolyl	cis-trans	isomerase/CLD
HTH_45	PF14947.1	gi|408403936|ref|YP_006861919.1|	-	2.4e-16	59.2	0.5	2.7e-16	59.1	0.3	1.0	1	0	0	1	1	1	1	Winged	helix-turn-helix
Rio2_N	PF09202.6	gi|408403936|ref|YP_006861919.1|	-	0.013	15.5	0.5	0.018	15.1	0.3	1.1	1	0	0	1	1	1	0	Rio2,	N-terminal
RNA_pol_Rpc34	PF05158.7	gi|408403936|ref|YP_006861919.1|	-	0.032	13.4	0.1	0.036	13.2	0.1	1.1	1	0	0	1	1	1	0	RNA	polymerase	Rpc34	subunit
UNC45-central	PF11701.3	gi|408403937|ref|YP_006861920.1|	-	0.1	12.2	0.1	0.12	11.9	0.1	1.1	1	0	0	1	1	1	0	Myosin-binding	striated	muscle	assembly	central
Gmx_para_CXXCG	PF09535.5	gi|408403939|ref|YP_006861922.1|	-	0.0038	16.2	0.2	0.0042	16.1	0.1	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(Gmx_para_CXXCG)
zf-DHHC	PF01529.15	gi|408403939|ref|YP_006861922.1|	-	0.92	8.8	5.3	1.1	8.5	3.7	1.1	1	0	0	1	1	1	0	DHHC	palmitoyltransferase
IMS	PF00817.15	gi|408403940|ref|YP_006861923.1|	-	2.7e-42	144.0	0.4	4.6e-42	143.3	0.3	1.4	1	0	0	1	1	1	1	impB/mucB/samB	family
DUF72	PF01904.13	gi|408403940|ref|YP_006861923.1|	-	1.3e-19	70.8	0.0	2.4e-19	70.0	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF72
IMS_C	PF11799.3	gi|408403940|ref|YP_006861923.1|	-	1.2e-16	60.7	0.2	2.3e-16	59.8	0.1	1.5	1	0	0	1	1	1	1	impB/mucB/samB	family	C-terminal	domain
HHH_5	PF14520.1	gi|408403940|ref|YP_006861923.1|	-	0.0001	22.4	0.0	0.00025	21.1	0.0	1.6	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
IMS_HHH	PF11798.3	gi|408403940|ref|YP_006861923.1|	-	0.00083	19.2	0.1	0.0022	17.9	0.0	1.8	1	0	0	1	1	1	1	IMS	family	HHH	motif
DUF4332	PF14229.1	gi|408403940|ref|YP_006861923.1|	-	0.0018	18.2	0.0	0.0093	15.9	0.0	2.1	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4332)
Cdd1	PF11731.3	gi|408403940|ref|YP_006861923.1|	-	0.02	14.7	0.1	0.1	12.5	0.0	2.3	3	0	0	3	3	3	0	Pathogenicity	locus
DUF2182	PF09948.4	gi|408403941|ref|YP_006861924.1|	-	3.8e-47	160.6	21.3	6.3e-47	159.9	14.7	1.3	1	1	0	1	1	1	1	Predicted	metal-binding	integral	membrane	protein	(DUF2182)
EmrE	PF13536.1	gi|408403941|ref|YP_006861924.1|	-	0.00065	19.8	6.3	0.00065	19.8	4.3	2.8	2	1	0	2	2	2	1	Multidrug	resistance	efflux	transporter
Methyltransf_2	PF00891.13	gi|408403943|ref|YP_006861926.1|	-	1.5e-39	135.6	0.0	2e-39	135.2	0.0	1.1	1	0	0	1	1	1	1	O-methyltransferase
Methyltransf_12	PF08242.7	gi|408403943|ref|YP_006861926.1|	-	2.6e-06	27.8	0.0	4.7e-06	26.9	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|408403943|ref|YP_006861926.1|	-	4.2e-06	26.5	0.0	5.6e-06	26.1	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|408403943|ref|YP_006861926.1|	-	1.6e-05	25.4	0.0	3.1e-05	24.5	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_16	PF10294.4	gi|408403943|ref|YP_006861926.1|	-	0.00021	20.8	0.0	0.00036	20.0	0.0	1.4	1	0	0	1	1	1	1	Putative	methyltransferase
MTS	PF05175.9	gi|408403943|ref|YP_006861926.1|	-	0.011	15.1	0.0	0.017	14.4	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	small	domain
Methyltransf_31	PF13847.1	gi|408403943|ref|YP_006861926.1|	-	0.014	14.9	0.0	0.022	14.3	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
PrmA	PF06325.8	gi|408403943|ref|YP_006861926.1|	-	0.018	14.1	0.0	0.027	13.5	0.0	1.2	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
zf-AN1	PF01428.11	gi|408403945|ref|YP_006861928.1|	-	1.6e-11	43.8	5.6	2.5e-11	43.2	3.9	1.2	1	0	0	1	1	1	1	AN1-like	Zinc	finger
Peptidase_M50	PF02163.17	gi|408403945|ref|YP_006861928.1|	-	4.7e-08	32.2	12.2	7.5e-07	28.2	8.4	2.2	1	1	0	1	1	1	1	Peptidase	family	M50
Acyl-CoA_dh_1	PF00441.19	gi|408403947|ref|YP_006861930.1|	-	4.5e-30	104.7	2.7	8.6e-29	100.5	1.9	2.3	1	1	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_N	PF02771.11	gi|408403947|ref|YP_006861930.1|	-	9.3e-21	74.5	0.0	3.1e-20	72.8	0.0	1.9	2	0	0	2	2	2	1	Acyl-CoA	dehydrogenase,	N-terminal	domain
Acyl-CoA_dh_M	PF02770.14	gi|408403947|ref|YP_006861930.1|	-	6.9e-16	57.5	0.0	1.5e-15	56.4	0.0	1.6	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	middle	domain
Acyl-CoA_dh_2	PF08028.6	gi|408403947|ref|YP_006861930.1|	-	1e-09	38.7	5.4	5.1e-09	36.4	3.8	1.9	1	1	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
DUF1326	PF07040.6	gi|408403948|ref|YP_006861931.1|	-	3.9e-54	183.2	0.0	4.4e-54	183.0	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1326)
Aminotran_3	PF00202.16	gi|408403949|ref|YP_006861932.1|	-	6.5e-79	265.2	0.0	8.1e-79	264.9	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class-III
Beta_elim_lyase	PF01212.16	gi|408403949|ref|YP_006861932.1|	-	0.048	12.7	0.0	0.072	12.2	0.0	1.3	1	0	0	1	1	1	0	Beta-eliminating	lyase
Response_reg	PF00072.19	gi|408403950|ref|YP_006861933.1|	-	6.3e-18	64.8	1.4	8.6e-18	64.3	0.9	1.2	1	0	0	1	1	1	1	Response	regulator	receiver	domain
DUF1487	PF07368.6	gi|408403950|ref|YP_006861933.1|	-	0.045	12.9	0.1	0.077	12.2	0.1	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1487)
PDZ_2	PF13180.1	gi|408403951|ref|YP_006861934.1|	-	3.4e-13	49.2	0.1	4.8e-13	48.7	0.1	1.2	1	0	0	1	1	1	1	PDZ	domain
Tricorn_PDZ	PF14685.1	gi|408403951|ref|YP_006861934.1|	-	0.051	13.3	0.2	0.094	12.5	0.1	1.6	1	1	0	1	1	1	0	Tricorn	protease	PDZ	domain
PDZ	PF00595.19	gi|408403951|ref|YP_006861934.1|	-	0.16	12.1	4.2	1.8	8.8	0.6	2.2	2	0	0	2	2	2	0	PDZ	domain	(Also	known	as	DHR	or	GLGF)
OapA	PF04225.7	gi|408403951|ref|YP_006861934.1|	-	0.16	11.8	0.1	0.26	11.1	0.1	1.3	1	0	0	1	1	1	0	Opacity-associated	protein	A	LysM-like	domain
GFA	PF04828.9	gi|408403952|ref|YP_006861935.1|	-	0.0061	16.4	0.7	0.35	10.8	0.0	2.2	1	1	1	2	2	2	2	Glutathione-dependent	formaldehyde-activating	enzyme
DZR	PF12773.2	gi|408403952|ref|YP_006861935.1|	-	0.019	14.7	0.0	0.035	13.9	0.0	1.4	1	1	0	1	1	1	0	Double	zinc	ribbon
Rpr2	PF04032.11	gi|408403952|ref|YP_006861935.1|	-	0.031	14.1	0.4	0.58	10.0	0.3	2.2	1	1	0	1	1	1	0	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
Arc_trans_TRASH	PF08394.5	gi|408403952|ref|YP_006861935.1|	-	0.04	14.0	0.9	0.28	11.3	0.0	2.2	2	0	0	2	2	2	0	Archaeal	TRASH	domain
Hemerythrin	PF01814.18	gi|408403953|ref|YP_006861936.1|	-	3.1e-15	56.5	4.4	3.3e-15	56.4	1.5	2.0	2	1	0	2	2	2	1	Hemerythrin	HHE	cation	binding	domain
MIase	PF02426.11	gi|408403954|ref|YP_006861937.1|	-	1.1e-06	28.3	0.0	4e-06	26.5	0.0	1.8	1	1	1	2	2	2	1	Muconolactone	delta-isomerase
Gln-synt_C	PF00120.19	gi|408403955|ref|YP_006861938.1|	-	3.2e-77	259.1	0.0	4.1e-77	258.8	0.0	1.1	1	0	0	1	1	1	1	Glutamine	synthetase,	catalytic	domain
Gln-synt_N	PF03951.14	gi|408403955|ref|YP_006861938.1|	-	1.1e-14	53.7	0.0	2.6e-14	52.5	0.0	1.7	1	0	0	1	1	1	1	Glutamine	synthetase,	beta-Grasp	domain
AsnC_trans_reg	PF01037.16	gi|408403956|ref|YP_006861939.1|	-	3.8e-12	45.7	0.1	5.7e-12	45.1	0.1	1.3	1	0	0	1	1	1	1	AsnC	family
HTH_24	PF13412.1	gi|408403956|ref|YP_006861939.1|	-	2.1e-08	33.4	0.0	4.7e-08	32.3	0.0	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.1	gi|408403956|ref|YP_006861939.1|	-	1.1e-05	24.9	0.0	1.9e-05	24.1	0.0	1.4	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
Fe_dep_repress	PF01325.14	gi|408403956|ref|YP_006861939.1|	-	0.0003	20.6	0.1	0.00056	19.7	0.1	1.5	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_28	PF13518.1	gi|408403956|ref|YP_006861939.1|	-	0.016	15.1	0.0	0.027	14.4	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
MarR	PF01047.17	gi|408403956|ref|YP_006861939.1|	-	0.025	14.2	0.0	0.05	13.3	0.0	1.5	1	0	0	1	1	1	0	MarR	family
HTH_1	PF00126.22	gi|408403956|ref|YP_006861939.1|	-	0.033	13.9	0.0	0.062	13.0	0.0	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
HTH_5	PF01022.15	gi|408403956|ref|YP_006861939.1|	-	0.041	13.5	0.0	0.14	11.8	0.0	1.9	3	0	0	3	3	3	0	Bacterial	regulatory	protein,	arsR	family
HTH_23	PF13384.1	gi|408403956|ref|YP_006861939.1|	-	0.067	12.8	0.0	0.14	11.8	0.0	1.6	1	0	0	1	1	1	0	Homeodomain-like	domain
Cdc6_C	PF09079.6	gi|408403956|ref|YP_006861939.1|	-	0.072	12.8	0.0	6.4	6.5	0.0	2.3	2	0	0	2	2	2	0	CDC6,	C	terminal
Rrf2	PF02082.15	gi|408403956|ref|YP_006861939.1|	-	0.089	12.9	0.0	0.32	11.1	0.0	1.9	2	0	0	2	2	2	0	Transcriptional	regulator
HTH_10	PF04967.7	gi|408403956|ref|YP_006861939.1|	-	0.099	12.2	0.0	0.2	11.2	0.0	1.5	1	0	0	1	1	1	0	HTH	DNA	binding	domain
HTH_Crp_2	PF13545.1	gi|408403956|ref|YP_006861939.1|	-	0.11	12.2	0.0	0.18	11.6	0.0	1.5	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
MarR_2	PF12802.2	gi|408403956|ref|YP_006861939.1|	-	0.12	12.0	0.0	0.24	11.0	0.0	1.5	1	0	0	1	1	1	0	MarR	family
TrmB	PF01978.14	gi|408403956|ref|YP_006861939.1|	-	0.14	11.9	0.1	0.43	10.3	0.0	1.8	1	1	1	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
TFIIB	PF00382.14	gi|408403957|ref|YP_006861940.1|	-	3e-31	107.0	5.2	6.4e-16	57.9	0.1	2.4	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.7	gi|408403957|ref|YP_006861940.1|	-	1.7e-06	27.1	3.0	2.8e-06	26.5	2.1	1.3	1	0	0	1	1	1	1	TFIIB	zinc-binding
Sigma70_r4	PF04545.11	gi|408403957|ref|YP_006861940.1|	-	0.0018	17.5	0.4	1.4	8.3	0.0	3.0	3	0	0	3	3	3	2	Sigma-70,	region	4
Cyclin_N	PF00134.18	gi|408403957|ref|YP_006861940.1|	-	0.011	15.2	0.2	4.1	6.9	0.0	2.4	2	0	0	2	2	2	0	Cyclin,	N-terminal	domain
HTH_11	PF08279.7	gi|408403957|ref|YP_006861940.1|	-	0.051	13.2	1.0	9.8	5.9	0.0	3.0	3	0	0	3	3	3	0	HTH	domain
Ribosomal_S27e	PF01667.12	gi|408403957|ref|YP_006861940.1|	-	0.16	11.5	5.7	0.34	10.4	3.9	1.5	1	0	0	1	1	1	0	Ribosomal	protein	S27
OrfB_Zn_ribbon	PF07282.6	gi|408403957|ref|YP_006861940.1|	-	0.19	11.4	1.5	0.43	10.2	1.1	1.6	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
zf-CHY	PF05495.7	gi|408403957|ref|YP_006861940.1|	-	0.3	11.2	3.5	0.6	10.3	2.4	1.5	1	0	0	1	1	1	0	CHY	zinc	finger
Zn_Tnp_IS91	PF14319.1	gi|408403957|ref|YP_006861940.1|	-	0.49	9.9	2.6	0.45	10.0	0.4	2.0	2	0	0	2	2	2	0	Transposase	zinc-binding	domain
zf-ribbon_3	PF13248.1	gi|408403957|ref|YP_006861940.1|	-	2.1	7.6	4.8	28	4.0	0.1	2.1	1	1	1	2	2	2	0	zinc-ribbon	domain
DUF4182	PF13790.1	gi|408403957|ref|YP_006861940.1|	-	2.8	7.8	7.3	1.2	8.9	0.6	2.9	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4182)
Rrf2	PF02082.15	gi|408403957|ref|YP_006861940.1|	-	3.6	7.7	5.3	8.8	6.5	0.1	3.4	3	2	2	5	5	5	0	Transcriptional	regulator
HTH_45	PF14947.1	gi|408403958|ref|YP_006861941.1|	-	3.2e-20	71.7	0.2	4e-20	71.4	0.2	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
Rad60-SLD	PF11976.3	gi|408403961|ref|YP_006861944.1|	-	0.082	12.5	0.0	0.098	12.3	0.0	1.2	1	0	0	1	1	1	0	Ubiquitin-2	like	Rad60	SUMO-like
Antitoxin-MazE	PF04014.13	gi|408403963|ref|YP_006861946.1|	-	0.00019	21.0	0.1	0.00045	19.8	0.1	1.6	1	1	0	1	1	1	1	Antidote-toxin	recognition	MazE
FKBP_N	PF01346.13	gi|408403964|ref|YP_006861947.1|	-	0.032	14.2	0.0	0.037	14.0	0.0	1.1	1	0	0	1	1	1	0	Domain	amino	terminal	to	FKBP-type	peptidyl-prolyl	isomerase
LKAAEAR	PF15478.1	gi|408403965|ref|YP_006861948.1|	-	0.031	14.5	0.1	0.042	14.1	0.1	1.2	1	0	0	1	1	1	0	Family	of	unknown	function	with	LKAAEAR	motif
RseA_C	PF03873.8	gi|408403965|ref|YP_006861948.1|	-	0.12	12.3	0.0	0.21	11.5	0.0	1.4	1	0	0	1	1	1	0	Anti	sigma-E	protein	RseA,	C-terminal	domain
GvpG	PF05120.7	gi|408403966|ref|YP_006861949.1|	-	0.074	12.8	0.1	0.19	11.5	0.1	1.6	1	0	0	1	1	1	0	Gas	vesicle	protein	G
SHOCT	PF09851.4	gi|408403966|ref|YP_006861949.1|	-	0.15	11.5	0.2	0.38	10.2	0.0	1.8	2	0	0	2	2	2	0	Short	C-terminal	domain
DUF202	PF02656.10	gi|408403966|ref|YP_006861949.1|	-	9.3	6.5	10.7	35	4.6	2.1	3.1	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF202)
DUF1181	PF06680.6	gi|408403967|ref|YP_006861950.1|	-	0.084	12.5	0.6	0.12	12.0	0.4	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1181)
zf-UBP	PF02148.14	gi|408403968|ref|YP_006861951.1|	-	0.0024	17.9	0.2	0.0032	17.5	0.2	1.2	1	0	0	1	1	1	1	Zn-finger	in	ubiquitin-hydrolases	and	other	protein
Histone_HNS	PF00816.16	gi|408403968|ref|YP_006861951.1|	-	0.035	14.6	0.5	0.044	14.2	0.3	1.3	1	1	0	1	1	1	0	H-NS	histone	family
DUF3696	PF12476.3	gi|408403974|ref|YP_006861957.1|	-	0.14	12.1	2.1	0.46	10.5	0.0	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3696)
GerE	PF00196.14	gi|408403975|ref|YP_006861958.1|	-	2.8e-06	26.5	0.2	7.6e-06	25.1	0.2	1.7	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	luxR	family
HTH_23	PF13384.1	gi|408403975|ref|YP_006861958.1|	-	3.3e-05	23.3	0.1	8.2e-05	22.1	0.1	1.7	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_38	PF13936.1	gi|408403975|ref|YP_006861958.1|	-	4.3e-05	22.9	0.0	8.9e-05	21.9	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_11	PF08279.7	gi|408403975|ref|YP_006861958.1|	-	7.9e-05	22.2	0.5	7.9e-05	22.2	0.3	2.0	2	0	0	2	2	2	1	HTH	domain
Sigma70_r4_2	PF08281.7	gi|408403975|ref|YP_006861958.1|	-	0.00013	21.3	0.2	0.00046	19.5	0.0	2.0	2	0	0	2	2	2	1	Sigma-70,	region	4
Sigma70_ECF	PF07638.6	gi|408403975|ref|YP_006861958.1|	-	0.00099	18.8	0.1	0.0021	17.7	0.1	1.6	1	0	0	1	1	1	1	ECF	sigma	factor
Trp_repressor	PF01371.14	gi|408403975|ref|YP_006861958.1|	-	0.0013	18.6	0.1	0.0027	17.5	0.1	1.6	1	0	0	1	1	1	1	Trp	repressor	protein
HTH_Crp_2	PF13545.1	gi|408403975|ref|YP_006861958.1|	-	0.0056	16.4	0.0	0.012	15.3	0.0	1.6	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_7	PF02796.10	gi|408403975|ref|YP_006861958.1|	-	0.012	15.4	0.0	0.034	14.0	0.0	1.8	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	resolvase
HTH_Tnp_ISL3	PF13542.1	gi|408403975|ref|YP_006861958.1|	-	0.019	14.1	0.2	0.038	13.1	0.1	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_24	PF13412.1	gi|408403975|ref|YP_006861958.1|	-	0.02	14.2	0.2	0.067	12.5	0.0	2.0	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
HTH_40	PF14493.1	gi|408403975|ref|YP_006861958.1|	-	0.025	14.7	0.8	0.063	13.5	0.6	2.0	1	1	0	1	1	1	0	Helix-turn-helix	domain
HTH_20	PF12840.2	gi|408403975|ref|YP_006861958.1|	-	0.046	13.5	0.0	0.16	11.8	0.0	1.9	2	0	0	2	2	2	0	Helix-turn-helix	domain
CPSase_L_D3	PF02787.14	gi|408403975|ref|YP_006861958.1|	-	0.1	12.3	0.3	0.1	12.3	0.2	2.0	2	1	0	2	2	2	0	Carbamoyl-phosphate	synthetase	large	chain,	oligomerisation	domain
HTH_3	PF01381.17	gi|408403975|ref|YP_006861958.1|	-	0.14	12.0	0.0	0.14	12.0	0.0	2.4	3	0	0	3	3	3	0	Helix-turn-helix
Phage_integrase	PF00589.17	gi|408403977|ref|YP_006861960.1|	-	0.011	15.4	0.0	0.035	13.7	0.0	2.0	2	0	0	2	2	2	0	Phage	integrase	family
CSTF_C	PF14304.1	gi|408403977|ref|YP_006861960.1|	-	0.011	14.9	0.2	0.021	14.0	0.1	1.4	1	0	0	1	1	1	0	Transcription	termination	and	cleavage	factor	C-terminal
Phage_int_SAM_1	PF02899.12	gi|408403977|ref|YP_006861960.1|	-	0.04	14.0	3.0	0.19	11.9	0.1	3.5	3	1	0	3	3	3	0	Phage	integrase,	N-terminal	SAM-like	domain
GLTP	PF08718.6	gi|408403977|ref|YP_006861960.1|	-	0.072	13.1	1.0	6.1	6.8	0.1	2.5	2	0	0	2	2	2	0	Glycolipid	transfer	protein	(GLTP)
DUF3166	PF11365.3	gi|408403977|ref|YP_006861960.1|	-	0.078	13.4	0.1	0.16	12.4	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3166)
DUF4446	PF14584.1	gi|408403977|ref|YP_006861960.1|	-	0.36	10.6	2.2	0.31	10.8	0.2	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4446)
4HB_MCP_1	PF12729.2	gi|408403977|ref|YP_006861960.1|	-	1.2	8.4	9.9	0.14	11.5	0.5	2.5	2	1	0	3	3	3	0	Four	helix	bundle	sensory	module	for	signal	transduction
GARS_A	PF01071.14	gi|408403978|ref|YP_006861961.1|	-	2.2e-12	46.9	0.0	2.8e-11	43.3	0.0	2.4	2	0	0	2	2	2	1	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
GARS_C	PF02843.11	gi|408403978|ref|YP_006861961.1|	-	2.6e-09	37.1	0.0	8.3e-09	35.5	0.0	2.0	1	1	0	1	1	1	1	Phosphoribosylglycinamide	synthetase,	C	domain
ATP-grasp_4	PF13535.1	gi|408403978|ref|YP_006861961.1|	-	2.2e-05	24.2	0.0	0.0002	21.1	0.0	2.1	2	0	0	2	2	2	1	ATP-grasp	domain
LAGLIDADG_3	PF14528.1	gi|408403978|ref|YP_006861961.1|	-	0.0005	20.2	0.0	0.0052	17.0	0.0	2.4	2	0	0	2	2	2	1	LAGLIDADG-like	domain
Hint_2	PF13403.1	gi|408403978|ref|YP_006861961.1|	-	0.0014	18.5	0.0	0.0033	17.3	0.0	1.6	1	1	0	1	1	1	1	Hint	domain
Syntaxin-6_N	PF09177.6	gi|408403978|ref|YP_006861961.1|	-	0.1	13.0	0.0	0.23	11.8	0.0	1.6	1	0	0	1	1	1	0	Syntaxin	6,	N-terminal
AsnC_trans_reg	PF01037.16	gi|408403979|ref|YP_006861962.1|	-	3.6e-09	36.1	0.1	3.9e-09	36.0	0.0	1.0	1	0	0	1	1	1	1	AsnC	family
GYD	PF08734.6	gi|408403979|ref|YP_006861962.1|	-	0.0071	16.0	0.0	0.0083	15.8	0.0	1.1	1	0	0	1	1	1	1	GYD	domain
ACT_4	PF13291.1	gi|408403979|ref|YP_006861962.1|	-	0.0086	16.3	0.1	2.6	8.4	0.0	2.2	2	0	0	2	2	2	2	ACT	domain
HMA	PF00403.21	gi|408403979|ref|YP_006861962.1|	-	0.19	11.8	1.8	0.68	10.1	1.2	1.9	1	1	1	2	2	2	0	Heavy-metal-associated	domain
TFIIE_beta	PF02186.10	gi|408403980|ref|YP_006861963.1|	-	0.013	15.4	0.1	0.015	15.2	0.1	1.1	1	0	0	1	1	1	0	TFIIE	beta	subunit	core	domain
NPHI_C	PF08469.5	gi|408403980|ref|YP_006861963.1|	-	0.025	14.4	0.6	0.025	14.4	0.4	1.0	1	0	0	1	1	1	0	Nucleoside	triphosphatase	I	C-terminal
DUF1761	PF08570.5	gi|408403981|ref|YP_006861964.1|	-	0.03	14.3	2.0	0.05	13.6	1.4	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1761)
DUF3007	PF11460.3	gi|408403981|ref|YP_006861964.1|	-	0.1	12.6	0.2	0.18	11.8	0.1	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3007)
adh_short	PF00106.20	gi|408403982|ref|YP_006861965.1|	-	2e-23	83.1	0.5	9.3e-23	80.9	0.2	1.9	2	0	0	2	2	2	1	short	chain	dehydrogenase
Epimerase	PF01370.16	gi|408403982|ref|YP_006861965.1|	-	2.3e-10	40.3	0.1	3e-10	39.9	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
KR	PF08659.5	gi|408403982|ref|YP_006861965.1|	-	2.6e-09	36.9	0.2	3.9e-09	36.4	0.1	1.3	1	0	0	1	1	1	1	KR	domain
adh_short_C2	PF13561.1	gi|408403982|ref|YP_006861965.1|	-	4.6e-09	36.3	0.2	2.8e-08	33.8	0.1	2.0	1	1	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
3HCDH_N	PF02737.13	gi|408403982|ref|YP_006861965.1|	-	0.00016	21.4	0.1	0.00029	20.5	0.1	1.4	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_binding_10	PF13460.1	gi|408403982|ref|YP_006861965.1|	-	0.0005	20.1	0.7	0.004	17.1	0.5	2.2	1	1	0	1	1	1	1	NADH(P)-binding
Polysacc_synt_2	PF02719.10	gi|408403982|ref|YP_006861965.1|	-	0.00087	18.2	0.1	0.0013	17.6	0.0	1.2	1	0	0	1	1	1	1	Polysaccharide	biosynthesis	protein
Eno-Rase_NADH_b	PF12242.3	gi|408403982|ref|YP_006861965.1|	-	0.015	15.1	0.1	0.031	14.0	0.1	1.6	1	0	0	1	1	1	0	NAD(P)H	binding	domain	of	trans-2-enoyl-CoA	reductase
2-Hacid_dh_C	PF02826.14	gi|408403982|ref|YP_006861965.1|	-	0.028	13.5	0.1	0.043	12.9	0.0	1.3	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
DUF1776	PF08643.5	gi|408403982|ref|YP_006861965.1|	-	0.036	13.1	0.1	0.15	11.1	0.1	1.9	1	1	0	1	1	1	0	Fungal	family	of	unknown	function	(DUF1776)
THF_DHG_CYH_C	PF02882.14	gi|408403982|ref|YP_006861965.1|	-	0.047	12.7	0.2	0.092	11.8	0.0	1.6	2	0	0	2	2	2	0	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
Shikimate_DH	PF01488.15	gi|408403982|ref|YP_006861965.1|	-	0.12	12.4	0.3	0.24	11.5	0.1	1.7	2	0	0	2	2	2	0	Shikimate	/	quinate	5-dehydrogenase
Amidohydro_4	PF13147.1	gi|408403983|ref|YP_006861966.1|	-	3.6e-27	96.0	0.0	6.3e-27	95.2	0.0	1.4	1	1	0	1	1	1	1	Amidohydrolase
Amidohydro_5	PF13594.1	gi|408403983|ref|YP_006861966.1|	-	9e-15	54.2	0.1	2.2e-14	53.0	0.1	1.7	1	0	0	1	1	1	1	Amidohydrolase
Amidohydro_1	PF01979.15	gi|408403983|ref|YP_006861966.1|	-	8.5e-13	48.6	0.1	1.4e-08	34.7	0.0	2.2	2	0	0	2	2	2	2	Amidohydrolase	family
Amidohydro_3	PF07969.6	gi|408403983|ref|YP_006861966.1|	-	1.1e-06	28.1	0.0	0.00028	20.2	0.0	2.4	2	0	0	2	2	2	2	Amidohydrolase	family
Urease_alpha	PF00449.15	gi|408403983|ref|YP_006861966.1|	-	0.00061	19.9	0.8	0.0019	18.3	0.6	1.8	1	0	0	1	1	1	1	Urease	alpha-subunit,	N-terminal	domain
TatD_DNase	PF01026.16	gi|408403983|ref|YP_006861966.1|	-	0.0036	16.5	0.0	0.0097	15.1	0.0	1.7	2	0	0	2	2	2	1	TatD	related	DNase
MscL	PF01741.13	gi|408403984|ref|YP_006861967.1|	-	7.8e-23	81.0	0.2	9.3e-23	80.7	0.2	1.0	1	0	0	1	1	1	1	Large-conductance	mechanosensitive	channel,	MscL
Glycoprotein_B	PF00606.13	gi|408403984|ref|YP_006861967.1|	-	0.023	12.7	0.2	0.03	12.3	0.2	1.1	1	0	0	1	1	1	0	Herpesvirus	Glycoprotein	B
FtsX	PF02687.16	gi|408403984|ref|YP_006861967.1|	-	0.08	12.7	2.3	0.1	12.3	1.6	1.1	1	0	0	1	1	1	0	FtsX-like	permease	family
ABC2_membrane_5	PF13346.1	gi|408403984|ref|YP_006861967.1|	-	0.11	11.7	4.7	0.29	10.4	3.2	1.6	1	1	0	1	1	1	0	ABC-2	family	transporter	protein
Rib_5-P_isom_A	PF06026.9	gi|408403985|ref|YP_006861968.1|	-	1.2e-51	174.4	0.0	1.5e-51	174.1	0.0	1.1	1	0	0	1	1	1	1	Ribose	5-phosphate	isomerase	A	(phosphoriboisomerase	A)
DeoRC	PF00455.17	gi|408403985|ref|YP_006861968.1|	-	4.5e-07	29.6	0.5	0.0068	16.0	0.0	2.2	1	1	1	2	2	2	2	DeoR	C	terminal	sensor	domain
Sugar-bind	PF04198.8	gi|408403985|ref|YP_006861968.1|	-	0.084	11.7	0.1	0.17	10.7	0.0	1.5	2	0	0	2	2	2	0	Putative	sugar-binding	domain
DctQ	PF04290.7	gi|408403988|ref|YP_006861971.1|	-	0.01	15.6	4.2	0.01	15.5	2.9	1.0	1	0	0	1	1	1	0	Tripartite	ATP-independent	periplasmic	transporters,	DctQ	component
MscS_TM	PF12794.2	gi|408403988|ref|YP_006861971.1|	-	0.031	12.8	1.9	0.036	12.6	1.3	1.1	1	0	0	1	1	1	0	Mechanosensitive	ion	channel	inner	membrane	domain	1
DUF872	PF05915.7	gi|408403988|ref|YP_006861971.1|	-	0.042	13.7	3.9	0.05	13.4	2.1	1.6	1	1	1	2	2	2	0	Eukaryotic	protein	of	unknown	function	(DUF872)
ABC2_membrane_2	PF12679.2	gi|408403988|ref|YP_006861971.1|	-	0.83	8.4	10.9	0.97	8.2	7.5	1.0	1	0	0	1	1	1	0	ABC-2	family	transporter	protein
DUF1049	PF06305.6	gi|408403988|ref|YP_006861971.1|	-	1.1	8.7	10.8	1.3	8.5	1.1	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1049)
DUF3955	PF13127.1	gi|408403988|ref|YP_006861971.1|	-	3.4	7.2	9.1	2.4	7.7	0.9	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3955)
YtpI	PF14007.1	gi|408403988|ref|YP_006861971.1|	-	5.4	7.0	7.2	0.39	10.6	1.0	2.1	2	2	0	2	2	2	0	YtpI-like	protein
DUF1700	PF08006.6	gi|408403988|ref|YP_006861971.1|	-	9.1	5.5	6.9	10	5.3	4.8	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1700)
TFIIB	PF00382.14	gi|408403989|ref|YP_006861972.1|	-	3.1e-37	126.1	7.1	3e-18	65.3	0.4	2.2	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.7	gi|408403989|ref|YP_006861972.1|	-	4.2e-09	35.5	0.2	7.3e-09	34.8	0.1	1.4	1	0	0	1	1	1	1	TFIIB	zinc-binding
Sigma70_r4	PF04545.11	gi|408403989|ref|YP_006861972.1|	-	9.4e-05	21.6	0.0	0.0055	16.0	0.0	2.7	2	0	0	2	2	2	1	Sigma-70,	region	4
Cyclin_N	PF00134.18	gi|408403989|ref|YP_006861972.1|	-	0.00057	19.4	0.1	0.02	14.4	0.0	2.1	2	0	0	2	2	2	1	Cyclin,	N-terminal	domain
Cyclin_C	PF02984.14	gi|408403989|ref|YP_006861972.1|	-	0.0017	18.2	0.1	0.93	9.4	0.0	2.4	2	1	0	2	2	2	2	Cyclin,	C-terminal	domain
HTH_AsnC-type	PF13404.1	gi|408403989|ref|YP_006861972.1|	-	0.0043	16.5	0.0	0.3	10.6	0.0	3.0	3	0	0	3	3	3	1	AsnC-type	helix-turn-helix	domain
HTH_3	PF01381.17	gi|408403989|ref|YP_006861972.1|	-	0.019	14.7	0.0	0.088	12.6	0.0	2.2	2	0	0	2	2	2	0	Helix-turn-helix
LacI	PF00356.16	gi|408403989|ref|YP_006861972.1|	-	0.025	14.2	3.0	0.51	9.9	0.1	3.3	3	0	0	3	3	3	0	Bacterial	regulatory	proteins,	lacI	family
HTH_23	PF13384.1	gi|408403989|ref|YP_006861972.1|	-	0.031	13.9	0.0	0.64	9.7	0.0	2.8	2	0	0	2	2	2	0	Homeodomain-like	domain
HTH_11	PF08279.7	gi|408403989|ref|YP_006861972.1|	-	0.054	13.1	0.1	5	6.8	0.0	2.6	2	0	0	2	2	2	0	HTH	domain
Sigma70_r4_2	PF08281.7	gi|408403989|ref|YP_006861972.1|	-	0.055	12.9	0.2	0.33	10.4	0.0	2.3	2	0	0	2	2	2	0	Sigma-70,	region	4
Rrf2	PF02082.15	gi|408403989|ref|YP_006861972.1|	-	0.057	13.5	0.4	21	5.2	0.0	3.1	3	0	0	3	3	3	0	Transcriptional	regulator
zf-ribbon_3	PF13248.1	gi|408403989|ref|YP_006861972.1|	-	0.11	11.7	0.3	0.21	10.8	0.2	1.4	1	0	0	1	1	1	0	zinc-ribbon	domain
MerR	PF00376.18	gi|408403989|ref|YP_006861972.1|	-	0.13	11.8	0.1	1.5	8.4	0.0	2.6	2	0	0	2	2	2	0	MerR	family	regulatory	protein
FliT	PF05400.8	gi|408403990|ref|YP_006861973.1|	-	0.35	11.3	1.5	10	6.5	0.0	3.0	2	1	1	3	3	3	0	Flagellar	protein	FliT
SUI1	PF01253.17	gi|408403991|ref|YP_006861974.1|	-	7.1e-23	80.2	0.2	9e-23	79.8	0.1	1.1	1	0	0	1	1	1	1	Translation	initiation	factor	SUI1
Metallothio_2	PF01439.13	gi|408403991|ref|YP_006861974.1|	-	0.028	14.9	0.7	0.039	14.4	0.5	1.2	1	0	0	1	1	1	0	Metallothionein
Auto_anti-p27	PF06677.7	gi|408403992|ref|YP_006861975.1|	-	2.2e-08	33.7	0.3	4.2e-08	32.8	0.2	1.5	1	0	0	1	1	1	1	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
OrfB_Zn_ribbon	PF07282.6	gi|408403992|ref|YP_006861975.1|	-	0.0049	16.5	0.3	0.0086	15.7	0.2	1.4	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
zf-ribbon_3	PF13248.1	gi|408403992|ref|YP_006861975.1|	-	0.0092	15.1	3.4	0.46	9.7	0.3	2.3	2	0	0	2	2	2	2	zinc-ribbon	domain
zinc_ribbon_2	PF13240.1	gi|408403992|ref|YP_006861975.1|	-	0.0098	15.3	2.9	0.79	9.2	0.2	2.3	2	0	0	2	2	2	2	zinc-ribbon	domain
Zn_Tnp_IS1595	PF12760.2	gi|408403992|ref|YP_006861975.1|	-	0.035	13.9	3.5	0.38	10.5	0.0	2.3	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
DZR	PF12773.2	gi|408403992|ref|YP_006861975.1|	-	0.043	13.6	2.4	0.093	12.5	1.6	1.5	1	1	0	1	1	1	0	Double	zinc	ribbon
zf-TFIIB	PF13453.1	gi|408403992|ref|YP_006861975.1|	-	0.087	12.0	0.5	0.15	11.2	0.0	1.6	2	0	0	2	2	2	0	Transcription	factor	zinc-finger
DUF2039	PF10217.4	gi|408403992|ref|YP_006861975.1|	-	0.098	12.6	0.5	0.16	11.9	0.3	1.3	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2039)
Spidroin_MaSp	PF11260.3	gi|408403992|ref|YP_006861975.1|	-	0.13	12.3	1.1	0.74	9.9	0.1	2.1	2	0	0	2	2	2	0	Major	ampullate	spidroin	1	and	2
Ribosomal_S27e	PF01667.12	gi|408403992|ref|YP_006861975.1|	-	0.21	11.1	1.8	0.36	10.3	1.2	1.3	1	0	0	1	1	1	0	Ribosomal	protein	S27
TF_Zn_Ribbon	PF08271.7	gi|408403992|ref|YP_006861975.1|	-	0.25	10.6	3.1	0.57	9.5	2.1	1.6	1	1	0	1	1	1	0	TFIIB	zinc-binding
Zn-ribbon_8	PF09723.5	gi|408403992|ref|YP_006861975.1|	-	0.54	10.2	3.6	3	7.8	0.3	2.2	1	1	1	2	2	2	0	Zinc	ribbon	domain
zf-RanBP	PF00641.13	gi|408403992|ref|YP_006861975.1|	-	0.59	9.2	2.8	4.8	6.3	1.9	2.1	1	1	0	1	1	1	0	Zn-finger	in	Ran	binding	protein	and	others
Sec61_beta	PF03911.11	gi|408403993|ref|YP_006861976.1|	-	3.6e-14	52.2	0.2	4.1e-14	52.0	0.1	1.1	1	0	0	1	1	1	1	Sec61beta	family
DUF2070	PF09843.4	gi|408403994|ref|YP_006861977.1|	-	5.1e-31	107.5	0.1	7.9e-31	106.9	0.1	1.3	1	0	0	1	1	1	1	Predicted	membrane	protein	(DUF2070)
Mrr_cat	PF04471.7	gi|408403995|ref|YP_006861978.1|	-	2.8e-07	30.3	0.0	6.6e-07	29.1	0.0	1.6	1	0	0	1	1	1	1	Restriction	endonuclease
NERD	PF08378.6	gi|408403995|ref|YP_006861978.1|	-	0.00028	21.1	0.0	0.00047	20.3	0.0	1.4	1	1	0	1	1	1	1	Nuclease-related	domain
SLS	PF14611.1	gi|408403995|ref|YP_006861978.1|	-	0.0068	15.8	0.0	0.012	15.0	0.0	1.4	1	0	0	1	1	1	1	Mitochondrial	inner-membrane-bound	regulator
CofC	PF01983.11	gi|408403997|ref|YP_006861980.1|	-	1.1e-30	106.2	0.0	1.3e-30	106.0	0.0	1.0	1	0	0	1	1	1	1	Guanylyl	transferase	CofC	like
NTP_transf_3	PF12804.2	gi|408403997|ref|YP_006861980.1|	-	1.1e-08	35.2	0.4	2.6e-08	34.0	0.3	1.5	1	1	0	1	1	1	1	MobA-like	NTP	transferase	domain
DUF2064	PF09837.4	gi|408403997|ref|YP_006861980.1|	-	3.7e-05	23.3	0.3	6.2e-05	22.6	0.2	1.3	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2064)
UPF0052	PF01933.13	gi|408403998|ref|YP_006861981.1|	-	5.7e-45	153.9	1.2	1.9e-44	152.2	0.8	1.6	1	1	0	1	1	1	1	Uncharacterised	protein	family	UPF0052
CcmH	PF03918.9	gi|408403998|ref|YP_006861981.1|	-	0.06	12.3	0.0	0.1	11.5	0.0	1.3	1	0	0	1	1	1	0	Cytochrome	C	biogenesis	protein
UPF0113	PF03657.8	gi|408404000|ref|YP_006861983.1|	-	4.7e-20	71.8	0.0	5.6e-20	71.6	0.0	1.0	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0113)
PUA	PF01472.15	gi|408404000|ref|YP_006861983.1|	-	2.9e-07	30.1	0.1	5.2e-07	29.3	0.1	1.4	1	0	0	1	1	1	1	PUA	domain
Nol1_Nop2_Fmu	PF01189.12	gi|408404001|ref|YP_006861984.1|	-	7.1e-60	202.7	0.0	8.1e-60	202.5	0.0	1.0	1	0	0	1	1	1	1	NOL1/NOP2/sun	family
Methyltransf_26	PF13659.1	gi|408404001|ref|YP_006861984.1|	-	1.1e-07	31.8	0.1	1.7e-07	31.2	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
FtsJ	PF01728.14	gi|408404001|ref|YP_006861984.1|	-	1.6e-06	28.2	0.1	2.9e-06	27.3	0.0	1.3	1	0	0	1	1	1	1	FtsJ-like	methyltransferase
Methyltransf_31	PF13847.1	gi|408404001|ref|YP_006861984.1|	-	8.6e-06	25.4	0.0	4.2e-05	23.1	0.0	1.9	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|408404001|ref|YP_006861984.1|	-	2.4e-05	24.8	0.1	5.2e-05	23.7	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.9	gi|408404001|ref|YP_006861984.1|	-	0.00029	20.2	0.0	0.00043	19.7	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	small	domain
Met_10	PF02475.11	gi|408404001|ref|YP_006861984.1|	-	0.0016	18.0	0.0	0.0028	17.2	0.0	1.3	1	0	0	1	1	1	1	Met-10+	like-protein
PCMT	PF01135.14	gi|408404001|ref|YP_006861984.1|	-	0.0028	17.1	0.0	0.0041	16.6	0.0	1.3	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
RrnaAD	PF00398.15	gi|408404001|ref|YP_006861984.1|	-	0.028	13.4	0.0	0.042	12.8	0.0	1.2	1	0	0	1	1	1	0	Ribosomal	RNA	adenine	dimethylase
Methyltransf_11	PF08241.7	gi|408404001|ref|YP_006861984.1|	-	0.042	14.3	0.1	4	8.0	0.0	3.1	2	1	0	2	2	2	0	Methyltransferase	domain
Peptidase_M15_3	PF08291.6	gi|408404002|ref|YP_006861985.1|	-	0.089	12.6	0.0	0.13	12.0	0.0	1.3	1	0	0	1	1	1	0	Peptidase	M15
DUF4307	PF14155.1	gi|408404002|ref|YP_006861985.1|	-	0.09	12.5	0.3	0.09	12.5	0.2	1.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4307)
NVEALA	PF14055.1	gi|408404002|ref|YP_006861985.1|	-	0.16	11.7	0.3	0.28	10.9	0.2	1.4	1	0	0	1	1	1	0	NVEALA	protein
Nic96	PF04097.9	gi|408404003|ref|YP_006861986.1|	-	0.14	10.2	0.0	0.16	10.0	0.0	1.0	1	0	0	1	1	1	0	Nup93/Nic96
MethyltransfD12	PF02086.10	gi|408404004|ref|YP_006861987.1|	-	2.4e-56	191.0	0.0	2.8e-56	190.8	0.0	1.0	1	0	0	1	1	1	1	D12	class	N6	adenine-specific	DNA	methyltransferase
Cons_hypoth95	PF03602.10	gi|408404004|ref|YP_006861987.1|	-	0.00036	19.9	0.0	0.1	12.0	0.0	2.3	2	1	0	2	2	2	2	Conserved	hypothetical	protein	95
Methyltransf_26	PF13659.1	gi|408404004|ref|YP_006861987.1|	-	0.00057	19.9	0.0	0.00098	19.1	0.0	1.4	1	1	0	1	1	1	1	Methyltransferase	domain
PRC	PF05239.11	gi|408404005|ref|YP_006861988.1|	-	0.0015	18.3	0.5	0.005	16.6	0.4	1.8	1	1	1	2	2	2	1	PRC-barrel	domain
PilP	PF04351.8	gi|408404005|ref|YP_006861988.1|	-	0.29	11.0	2.8	0.43	10.4	0.2	1.9	2	0	0	2	2	2	0	Pilus	assembly	protein,	PilP
DUF2757	PF10955.3	gi|408404006|ref|YP_006861989.1|	-	0.018	15.2	0.1	0.021	15.0	0.0	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2757)
zf-C2H2_2	PF12756.2	gi|408404006|ref|YP_006861989.1|	-	0.032	14.3	0.1	0.032	14.3	0.0	1.0	1	0	0	1	1	1	0	C2H2	type	zinc-finger	(2	copies)
zf-DBF	PF07535.7	gi|408404006|ref|YP_006861989.1|	-	0.073	12.7	0.5	0.09	12.4	0.3	1.2	1	0	0	1	1	1	0	DBF	zinc	finger
TF_Zn_Ribbon	PF08271.7	gi|408404006|ref|YP_006861989.1|	-	0.086	12.1	0.0	0.14	11.4	0.0	1.4	1	0	0	1	1	1	0	TFIIB	zinc-binding
DUF678	PF05077.7	gi|408404007|ref|YP_006861990.1|	-	0.027	14.4	0.1	0.028	14.4	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF678)
SecIII_SopE_N	PF05364.9	gi|408404007|ref|YP_006861990.1|	-	0.086	12.6	0.0	0.091	12.6	0.0	1.0	1	0	0	1	1	1	0	Salmonella	type	III	secretion	SopE	effector	N-terminus
SAS4	PF15460.1	gi|408404007|ref|YP_006861990.1|	-	0.11	12.3	0.2	0.12	12.3	0.1	1.1	1	0	0	1	1	1	0	Something	about	silencing,	SAS,	complex	subunit	4
DUF367	PF04034.8	gi|408404008|ref|YP_006861991.1|	-	3.6e-40	136.4	0.0	4.5e-40	136.2	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF367)
RLI	PF04068.10	gi|408404008|ref|YP_006861991.1|	-	0.0041	16.6	0.0	0.007	15.9	0.0	1.4	1	0	0	1	1	1	1	Possible	Fer4-like	domain	in	RNase	L	inhibitor,	RLI
ResIII	PF04851.10	gi|408404009|ref|YP_006861992.1|	-	1.5e-13	51.0	0.0	9.9e-13	48.3	0.0	2.2	1	1	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
Helicase_C	PF00271.26	gi|408404009|ref|YP_006861992.1|	-	8.4e-10	38.3	0.0	1.5e-09	37.5	0.0	1.5	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
DEAD	PF00270.24	gi|408404009|ref|YP_006861992.1|	-	2.7e-08	33.4	0.0	1.3e-07	31.2	0.0	2.1	2	1	0	2	2	2	1	DEAD/DEAH	box	helicase
AAA_30	PF13604.1	gi|408404009|ref|YP_006861992.1|	-	0.0011	18.6	0.2	0.7	9.4	0.0	3.2	3	1	0	3	3	3	2	AAA	domain
3HCDH_N	PF02737.13	gi|408404011|ref|YP_006861994.1|	-	3.8e-64	215.6	0.0	6.6e-64	214.8	0.0	1.4	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
3HCDH	PF00725.17	gi|408404011|ref|YP_006861994.1|	-	1.9e-28	98.7	0.1	6.7e-23	80.9	0.0	3.2	3	0	0	3	3	3	2	3-hydroxyacyl-CoA	dehydrogenase,	C-terminal	domain
NAD_Gly3P_dh_N	PF01210.18	gi|408404011|ref|YP_006861994.1|	-	3.4e-06	26.8	0.1	6.6e-06	25.9	0.0	1.5	1	0	0	1	1	1	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
NAD_binding_2	PF03446.10	gi|408404011|ref|YP_006861994.1|	-	5.1e-05	23.1	0.1	8.5e-05	22.4	0.1	1.4	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
F420_oxidored	PF03807.12	gi|408404011|ref|YP_006861994.1|	-	0.00055	20.3	0.2	0.019	15.3	0.1	2.6	2	1	0	2	2	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
UDPG_MGDP_dh_N	PF03721.9	gi|408404011|ref|YP_006861994.1|	-	0.0066	15.8	0.0	0.011	15.1	0.0	1.3	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
Lysine_decarbox	PF03641.9	gi|408404012|ref|YP_006861995.1|	-	6.9e-09	35.6	0.4	1.2e-07	31.6	0.3	2.3	1	1	0	1	1	1	1	Possible	lysine	decarboxylase
DNA_processg_A	PF02481.10	gi|408404012|ref|YP_006861995.1|	-	5.3e-05	22.2	0.3	9e-05	21.4	0.1	1.4	2	0	0	2	2	2	1	DNA	recombination-mediator	protein	A
DAGK_cat	PF00781.19	gi|408404012|ref|YP_006861995.1|	-	0.077	12.4	6.9	0.62	9.5	0.1	2.7	2	1	1	3	3	3	0	Diacylglycerol	kinase	catalytic	domain
Pribosyltran	PF00156.22	gi|408404013|ref|YP_006861996.1|	-	3.1e-22	78.6	0.8	4.8e-22	77.9	0.5	1.3	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
PRTase_2	PF15609.1	gi|408404013|ref|YP_006861996.1|	-	1.2e-05	24.6	0.0	0.0031	16.8	0.0	2.2	2	0	0	2	2	2	2	Phosphoribosyl	transferase
UPRTase	PF14681.1	gi|408404013|ref|YP_006861996.1|	-	0.0029	16.8	0.0	0.0047	16.1	0.0	1.3	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
AdoHcyase	PF05221.12	gi|408404014|ref|YP_006861997.1|	-	4.1e-68	229.2	0.3	4.5e-68	229.0	0.2	1.0	1	0	0	1	1	1	1	S-adenosyl-L-homocysteine	hydrolase
AdoHcyase_NAD	PF00670.16	gi|408404014|ref|YP_006861997.1|	-	1.3e-55	187.6	4.9	5.3e-55	185.6	3.0	2.0	2	0	0	2	2	2	1	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
2-Hacid_dh_C	PF02826.14	gi|408404014|ref|YP_006861997.1|	-	3.7e-11	42.5	2.9	6.6e-11	41.6	0.4	2.3	2	2	0	2	2	2	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
IlvN	PF07991.7	gi|408404014|ref|YP_006861997.1|	-	3.4e-06	26.5	1.1	9.5e-06	25.0	0.8	1.8	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
ELFV_dehydrog	PF00208.16	gi|408404014|ref|YP_006861997.1|	-	0.002	17.7	1.2	0.0038	16.8	0.9	1.4	1	0	0	1	1	1	1	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
Shikimate_DH	PF01488.15	gi|408404014|ref|YP_006861997.1|	-	0.003	17.6	2.7	0.052	13.6	0.6	2.4	1	1	1	2	2	2	1	Shikimate	/	quinate	5-dehydrogenase
TrkA_N	PF02254.13	gi|408404014|ref|YP_006861997.1|	-	0.0049	16.8	0.2	0.015	15.3	0.2	1.9	1	0	0	1	1	1	1	TrkA-N	domain
F420_oxidored	PF03807.12	gi|408404014|ref|YP_006861997.1|	-	0.016	15.6	1.0	0.054	13.9	0.4	2.1	2	0	0	2	2	2	0	NADP	oxidoreductase	coenzyme	F420-dependent
AlaDh_PNT_C	PF01262.16	gi|408404014|ref|YP_006861997.1|	-	0.048	13.2	4.5	0.083	12.4	1.4	2.3	1	1	1	2	2	2	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
3HCDH_N	PF02737.13	gi|408404014|ref|YP_006861997.1|	-	0.092	12.3	1.3	0.18	11.4	0.9	1.5	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_binding_7	PF13241.1	gi|408404014|ref|YP_006861997.1|	-	0.3	11.3	2.4	0.32	11.2	0.4	2.0	2	0	0	2	2	2	0	Putative	NAD(P)-binding
DnaJ_CXXCXGXG	PF00684.14	gi|408404016|ref|YP_006861999.1|	-	0.0032	17.4	1.7	0.0038	17.2	1.2	1.2	1	0	0	1	1	1	1	DnaJ	central	domain
DZR	PF12773.2	gi|408404016|ref|YP_006861999.1|	-	0.016	15.0	1.2	0.019	14.7	0.8	1.2	1	0	0	1	1	1	0	Double	zinc	ribbon
Ribosomal_L40e	PF01020.12	gi|408404016|ref|YP_006861999.1|	-	0.031	13.8	2.4	0.036	13.6	1.7	1.2	1	0	0	1	1	1	0	Ribosomal	L40e	family
Paired_CXXCH_1	PF09699.5	gi|408404016|ref|YP_006861999.1|	-	0.048	13.1	0.8	0.79	9.2	0.1	2.1	2	0	0	2	2	2	0	Doubled	CXXCH	motif	(Paired_CXXCH_1)
PocR	PF10114.4	gi|408404016|ref|YP_006861999.1|	-	0.074	12.2	0.4	0.074	12.2	0.3	1.0	1	0	0	1	1	1	0	Sensory	domain	found	in	PocR
zinc_ribbon_2	PF13240.1	gi|408404016|ref|YP_006861999.1|	-	0.078	12.4	2.7	0.11	12.0	1.9	1.2	1	0	0	1	1	1	0	zinc-ribbon	domain
Cytochrome_C7	PF14522.1	gi|408404016|ref|YP_006861999.1|	-	0.15	11.7	2.2	0.38	10.4	1.6	1.5	1	1	1	2	2	2	0	Cytochrome	c7
DNA_RNApol_7kD	PF03604.8	gi|408404016|ref|YP_006861999.1|	-	0.15	11.5	5.2	0.26	10.7	3.6	1.5	1	1	0	1	1	1	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
zf-CCHC	PF00098.18	gi|408404016|ref|YP_006861999.1|	-	3.9	7.5	9.0	3.8	7.6	1.8	2.2	2	0	0	2	2	2	0	Zinc	knuckle
Cupin_2	PF07883.6	gi|408404017|ref|YP_006862000.1|	-	3.8e-13	48.7	0.1	4.7e-13	48.4	0.1	1.1	1	0	0	1	1	1	1	Cupin	domain
ARD	PF03079.9	gi|408404017|ref|YP_006862000.1|	-	3.9e-07	30.1	0.0	5.3e-07	29.7	0.0	1.2	1	0	0	1	1	1	1	ARD/ARD'	family
Cupin_1	PF00190.17	gi|408404017|ref|YP_006862000.1|	-	6.5e-06	25.6	0.0	8.3e-06	25.2	0.0	1.2	1	0	0	1	1	1	1	Cupin
AraC_binding	PF02311.14	gi|408404017|ref|YP_006862000.1|	-	0.00015	21.4	0.0	0.0002	21.0	0.0	1.2	1	0	0	1	1	1	1	AraC-like	ligand	binding	domain
CENP-C_C	PF11699.3	gi|408404017|ref|YP_006862000.1|	-	0.0021	17.9	0.0	0.0026	17.7	0.0	1.1	1	0	0	1	1	1	1	Mif2/CENP-C	like
Cupin_6	PF12852.2	gi|408404017|ref|YP_006862000.1|	-	0.018	14.6	0.0	0.022	14.3	0.0	1.2	1	0	0	1	1	1	0	Cupin
Cupin_3	PF05899.7	gi|408404017|ref|YP_006862000.1|	-	0.026	13.9	0.0	0.037	13.4	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF861)
Auxin_BP	PF02041.11	gi|408404017|ref|YP_006862000.1|	-	0.029	13.8	0.0	0.044	13.2	0.0	1.4	1	1	0	1	1	1	0	Auxin	binding	protein
GPI	PF06560.6	gi|408404017|ref|YP_006862000.1|	-	0.03	13.3	0.0	0.073	12.0	0.0	1.7	1	1	1	2	2	2	0	Glucose-6-phosphate	isomerase	(GPI)
VGCC_alpha2	PF08473.6	gi|408404018|ref|YP_006862001.1|	-	0.097	12.4	0.1	0.18	11.5	0.0	1.5	1	1	0	1	1	1	0	Neuronal	voltage-dependent	calcium	channel	alpha	2acd
CCP_MauG	PF03150.9	gi|408404018|ref|YP_006862001.1|	-	4.4	7.5	5.2	51	4.1	0.0	2.8	2	1	1	3	3	3	0	Di-haem	cytochrome	c	peroxidase
SIMPL	PF04402.9	gi|408404019|ref|YP_006862002.1|	-	2.8e-47	161.3	1.7	3.6e-47	160.9	1.2	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF541)
Beta_propel	PF09826.4	gi|408404020|ref|YP_006862003.1|	-	1.5e-158	528.4	8.5	1.7e-158	528.2	5.9	1.0	1	0	0	1	1	1	1	Beta	propeller	domain
Catalase-rel	PF06628.7	gi|408404020|ref|YP_006862003.1|	-	0.017	14.9	0.1	0.33	10.8	0.1	2.3	2	0	0	2	2	2	0	Catalase-related	immune-responsive
NS3_envE	PF02723.9	gi|408404020|ref|YP_006862003.1|	-	1.1	9.2	3.3	2.1	8.2	0.8	2.4	2	0	0	2	2	2	0	Non-structural	protein	NS3/Small	envelope	protein	E
DUF3298	PF11738.3	gi|408404020|ref|YP_006862003.1|	-	2.4	8.7	7.8	0.95	10.0	0.1	3.6	4	0	0	4	4	4	0	Protein	of	unknown	function	(DUF3298)
DUF2296	PF10058.4	gi|408404021|ref|YP_006862004.1|	-	0.039	13.7	0.7	0.049	13.3	0.0	1.5	2	0	0	2	2	2	0	Predicted	integral	membrane	metal-binding	protein	(DUF2296)
zf-DNA_Pol	PF08996.5	gi|408404021|ref|YP_006862004.1|	-	0.065	12.5	0.6	0.064	12.6	0.4	1.1	1	0	0	1	1	1	0	DNA	Polymerase	alpha	zinc	finger
zf-dskA_traR	PF01258.12	gi|408404021|ref|YP_006862004.1|	-	0.078	12.7	0.3	0.17	11.6	0.2	1.6	1	1	0	1	1	1	0	Prokaryotic	dksA/traR	C4-type	zinc	finger
DUF1922	PF09082.5	gi|408404021|ref|YP_006862004.1|	-	0.087	12.8	0.2	0.1	12.6	0.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1922)
DUF1451	PF07295.6	gi|408404021|ref|YP_006862004.1|	-	0.28	10.9	1.8	0.57	9.9	0.1	1.9	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1451)
DUF4182	PF13790.1	gi|408404021|ref|YP_006862004.1|	-	1.6	8.5	5.1	12	5.7	0.1	2.7	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4182)
Response_reg	PF00072.19	gi|408404023|ref|YP_006862006.1|	-	2.1e-20	72.8	0.1	2.4e-20	72.6	0.0	1.0	1	0	0	1	1	1	1	Response	regulator	receiver	domain
N6_N4_Mtase	PF01555.13	gi|408404024|ref|YP_006862007.1|	-	1.1e-39	136.3	0.0	1.5e-39	135.8	0.0	1.2	1	0	0	1	1	1	1	DNA	methylase
Methyltransf_26	PF13659.1	gi|408404024|ref|YP_006862007.1|	-	5.5e-09	36.0	0.0	0.0013	18.7	0.0	2.3	2	0	0	2	2	2	2	Methyltransferase	domain
UPF0020	PF01170.13	gi|408404024|ref|YP_006862007.1|	-	0.081	12.4	0.0	1.8	8.0	0.0	2.1	2	0	0	2	2	2	0	Putative	RNA	methylase	family	UPF0020
CHASE4	PF05228.8	gi|408404026|ref|YP_006862009.1|	-	0.14	11.7	0.0	0.15	11.6	0.0	1.0	1	0	0	1	1	1	0	CHASE4	domain
HTH_45	PF14947.1	gi|408404027|ref|YP_006862010.1|	-	1.4e-23	82.5	3.2	1.5e-23	82.3	2.2	1.0	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF4364	PF14277.1	gi|408404027|ref|YP_006862010.1|	-	0.00045	19.8	0.6	0.00045	19.8	0.4	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4364)
DUF4423	PF14394.1	gi|408404027|ref|YP_006862010.1|	-	0.037	13.5	0.0	0.04	13.4	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
TrmB	PF01978.14	gi|408404027|ref|YP_006862010.1|	-	0.048	13.3	0.1	0.057	13.1	0.0	1.2	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
DUF2250	PF10007.4	gi|408404027|ref|YP_006862010.1|	-	0.051	13.4	0.1	0.064	13.1	0.1	1.2	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_24	PF13412.1	gi|408404027|ref|YP_006862010.1|	-	0.076	12.4	0.1	0.15	11.4	0.1	1.5	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
APC2	PF08672.6	gi|408404027|ref|YP_006862010.1|	-	0.08	13.2	0.4	0.11	12.7	0.2	1.3	1	0	0	1	1	1	0	Anaphase	promoting	complex	(APC)	subunit	2
ParBc	PF02195.13	gi|408404028|ref|YP_006862011.1|	-	6.1e-19	67.9	0.2	1.4e-18	66.7	0.1	1.7	1	0	0	1	1	1	1	ParB-like	nuclease	domain
KorB	PF08535.5	gi|408404028|ref|YP_006862011.1|	-	1.1e-05	25.4	0.1	3e-05	24.0	0.1	1.8	1	1	0	1	1	1	1	KorB	domain
HTH_24	PF13412.1	gi|408404028|ref|YP_006862011.1|	-	0.013	14.8	0.9	1	8.8	0.0	3.1	3	0	0	3	3	3	0	Winged	helix-turn-helix	DNA-binding
SWIB	PF02201.13	gi|408404028|ref|YP_006862011.1|	-	0.066	12.9	0.0	0.2	11.3	0.0	1.9	1	0	0	1	1	1	0	SWIB/MDM2	domain
Chorion_3	PF05387.6	gi|408404030|ref|YP_006862013.1|	-	5.6	6.3	18.0	6.3	6.1	12.5	1.0	1	0	0	1	1	1	0	Chorion	family	3
Sporozoite_P67	PF05642.6	gi|408404031|ref|YP_006862014.1|	-	5.3	4.7	15.6	6.6	4.4	10.8	1.2	1	0	0	1	1	1	0	Sporozoite	P67	surface	antigen
HTH_45	PF14947.1	gi|408404032|ref|YP_006862015.1|	-	1.1e-19	69.9	3.4	1.3e-19	69.8	2.3	1.0	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF4364	PF14277.1	gi|408404032|ref|YP_006862015.1|	-	0.019	14.6	0.7	0.023	14.3	0.5	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
DUF1795	PF08786.6	gi|408404033|ref|YP_006862016.1|	-	0.00035	20.4	0.1	0.00048	19.9	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1795)
YjeF_N	PF03853.10	gi|408404034|ref|YP_006862017.1|	-	7.5e-50	168.8	0.0	8.7e-50	168.6	0.0	1.0	1	0	0	1	1	1	1	YjeF-related	protein	N-terminus
Lactamase_B	PF00753.22	gi|408404035|ref|YP_006862018.1|	-	5.8e-27	94.6	2.1	9.9e-27	93.8	1.4	1.4	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.2	gi|408404035|ref|YP_006862018.1|	-	5.8e-06	25.9	0.1	1e-05	25.1	0.1	1.5	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
CBS	PF00571.23	gi|408404035|ref|YP_006862018.1|	-	0.035	13.9	0.0	0.066	13.0	0.0	1.4	1	0	0	1	1	1	0	CBS	domain
HtrL_YibB	PF09612.5	gi|408404035|ref|YP_006862018.1|	-	0.15	11.3	0.0	0.21	10.7	0.0	1.2	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(HtrL_YibB)
DBI_PRT	PF02277.12	gi|408404036|ref|YP_006862019.1|	-	6.3e-30	104.3	4.1	6.3e-30	104.3	2.9	1.4	1	1	0	1	1	1	1	Phosphoribosyltransferase
DUF3911	PF13050.1	gi|408404037|ref|YP_006862020.1|	-	0.022	14.8	0.2	0.14	12.2	0.0	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3911)
Herpes_UL17	PF04559.7	gi|408404037|ref|YP_006862020.1|	-	0.15	10.6	0.0	0.16	10.4	0.0	1.0	1	0	0	1	1	1	0	Herpesvirus	UL17	protein
Pur_DNA_glyco	PF02245.11	gi|408404038|ref|YP_006862021.1|	-	3.8e-58	195.6	0.0	4.3e-58	195.4	0.0	1.0	1	0	0	1	1	1	1	Methylpurine-DNA	glycosylase	(MPG)
UDG	PF03167.14	gi|408404039|ref|YP_006862022.1|	-	5e-42	142.9	0.0	6.3e-42	142.6	0.0	1.1	1	0	0	1	1	1	1	Uracil	DNA	glycosylase	superfamily
DUF4064	PF13273.1	gi|408404040|ref|YP_006862023.1|	-	0.025	14.6	0.3	0.035	14.2	0.2	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4064)
Protocadherin	PF08374.6	gi|408404040|ref|YP_006862023.1|	-	0.037	13.6	0.4	0.059	13.0	0.0	1.5	2	0	0	2	2	2	0	Protocadherin
DUF2339	PF10101.4	gi|408404040|ref|YP_006862023.1|	-	0.069	11.4	0.1	0.076	11.2	0.1	1.1	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2339)
DUF808	PF05661.7	gi|408404040|ref|YP_006862023.1|	-	0.13	11.0	0.7	0.16	10.7	0.5	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF808)
Claudin_2	PF13903.1	gi|408404040|ref|YP_006862023.1|	-	0.72	9.5	3.2	1.3	8.6	2.2	1.5	1	1	0	1	1	1	0	PMP-22/EMP/MP20/Claudin	tight	junction
Transglut_core2	PF13369.1	gi|408404041|ref|YP_006862024.1|	-	2.9e-40	137.2	0.0	4.5e-40	136.6	0.0	1.3	1	0	0	1	1	1	1	Transglutaminase-like	superfamily
TPR_9	PF13371.1	gi|408404041|ref|YP_006862024.1|	-	1.5e-08	34.3	0.1	2.8e-08	33.4	0.0	1.5	1	0	0	1	1	1	1	Tetratricopeptide	repeat
TPR_11	PF13414.1	gi|408404041|ref|YP_006862024.1|	-	0.022	14.3	0.0	0.05	13.2	0.0	1.6	1	0	0	1	1	1	0	TPR	repeat
TPR_19	PF14559.1	gi|408404041|ref|YP_006862024.1|	-	0.029	14.7	0.1	0.085	13.1	0.1	1.8	1	0	0	1	1	1	0	Tetratricopeptide	repeat
TPR_1	PF00515.23	gi|408404041|ref|YP_006862024.1|	-	0.033	13.7	0.0	0.089	12.4	0.0	1.7	1	0	0	1	1	1	0	Tetratricopeptide	repeat
TPR_14	PF13428.1	gi|408404041|ref|YP_006862024.1|	-	0.036	14.6	0.0	0.13	12.9	0.0	2.0	1	0	0	1	1	1	0	Tetratricopeptide	repeat
TPR_2	PF07719.12	gi|408404041|ref|YP_006862024.1|	-	0.066	13.1	0.0	0.17	11.8	0.0	1.8	1	0	0	1	1	1	0	Tetratricopeptide	repeat
Ammonium_transp	PF00909.16	gi|408404042|ref|YP_006862025.1|	-	2e-117	392.0	37.0	2e-117	392.0	25.6	1.3	2	0	0	2	2	2	1	Ammonium	Transporter	Family
Na_H_Exchanger	PF00999.16	gi|408404043|ref|YP_006862026.1|	-	4.9e-64	216.2	62.3	5.8e-64	215.9	43.2	1.0	1	0	0	1	1	1	1	Sodium/hydrogen	exchanger	family
LVIVD	PF08309.6	gi|408404044|ref|YP_006862027.1|	-	0.79	8.7	5.9	0.44	9.5	0.2	2.3	2	0	0	2	2	2	0	LVIVD	repeat
BNR	PF02012.15	gi|408404045|ref|YP_006862028.1|	-	2.8	8.1	4.1	1.5	8.9	0.4	2.2	2	0	0	2	2	2	0	BNR/Asp-box	repeat
Frankia_peptide	PF14407.1	gi|408404046|ref|YP_006862029.1|	-	0.0008	19.1	0.0	0.0011	18.7	0.0	1.3	1	0	0	1	1	1	1	Ribosomally	synthesized	peptide	prototyped	by	Frankia	Franean1_4349.
LigA	PF07746.6	gi|408404046|ref|YP_006862029.1|	-	0.084	12.8	0.0	0.11	12.5	0.0	1.2	1	0	0	1	1	1	0	Aromatic-ring-opening	dioxygenase	LigAB,	LigA	subunit
OGG_N	PF07934.7	gi|408404048|ref|YP_006862031.1|	-	1.5e-13	50.7	0.2	5.6e-13	48.8	0.0	2.0	2	1	0	2	2	2	1	8-oxoguanine	DNA	glycosylase,	N-terminal	domain
HhH-GPD	PF00730.20	gi|408404048|ref|YP_006862031.1|	-	2.7e-11	43.6	0.0	5.5e-11	42.7	0.0	1.5	2	0	0	2	2	2	1	HhH-GPD	superfamily	base	excision	DNA	repair	protein
HHH	PF00633.18	gi|408404048|ref|YP_006862031.1|	-	0.008	15.8	0.0	0.79	9.5	0.0	2.6	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
HHH_8	PF14716.1	gi|408404048|ref|YP_006862031.1|	-	0.05	13.7	0.1	0.11	12.6	0.1	1.6	1	0	0	1	1	1	0	Helix-hairpin-helix	domain
HHH_3	PF12836.2	gi|408404048|ref|YP_006862031.1|	-	0.1	12.5	0.0	15	5.6	0.0	2.9	3	0	0	3	3	3	0	Helix-hairpin-helix	motif
HHH_2	PF12826.2	gi|408404048|ref|YP_006862031.1|	-	0.11	12.3	0.0	0.66	9.9	0.0	2.3	3	0	0	3	3	3	0	Helix-hairpin-helix	motif
Antitoxin-MazE	PF04014.13	gi|408404049|ref|YP_006862032.1|	-	0.00072	19.2	0.3	0.0014	18.3	0.2	1.4	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE
AstA	PF04958.7	gi|408404049|ref|YP_006862032.1|	-	0.11	10.9	0.0	0.13	10.7	0.0	1.0	1	0	0	1	1	1	0	Arginine	N-succinyltransferase	beta	subunit
Abhydrolase_6	PF12697.2	gi|408404050|ref|YP_006862033.1|	-	2.9e-39	135.2	0.0	3.3e-39	135.1	0.0	1.0	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_1	PF00561.15	gi|408404050|ref|YP_006862033.1|	-	4.1e-28	98.5	0.0	5.2e-28	98.1	0.0	1.1	1	0	0	1	1	1	1	alpha/beta	hydrolase	fold
Abhydrolase_5	PF12695.2	gi|408404050|ref|YP_006862033.1|	-	8.4e-20	71.0	0.0	1.9e-19	69.8	0.0	1.5	1	1	0	1	1	1	1	Alpha/beta	hydrolase	family
Ndr	PF03096.9	gi|408404050|ref|YP_006862033.1|	-	6e-06	24.9	0.0	2.5e-05	22.9	0.0	1.8	1	1	0	1	1	1	1	Ndr	family
Abhydrolase_3	PF07859.8	gi|408404050|ref|YP_006862033.1|	-	3e-05	23.6	0.0	5.2e-05	22.9	0.0	1.4	1	1	0	1	1	1	1	alpha/beta	hydrolase	fold
Ser_hydrolase	PF06821.8	gi|408404050|ref|YP_006862033.1|	-	6.7e-05	22.5	0.0	0.031	13.8	0.0	2.2	2	0	0	2	2	2	2	Serine	hydrolase
Abhydrolase_2	PF02230.11	gi|408404050|ref|YP_006862033.1|	-	0.00034	20.1	0.0	0.22	10.9	0.0	3.1	3	0	0	3	3	3	1	Phospholipase/Carboxylesterase
Hydrolase_4	PF12146.3	gi|408404050|ref|YP_006862033.1|	-	0.0011	18.7	0.0	0.0021	17.8	0.0	1.5	1	0	0	1	1	1	1	Putative	lysophospholipase
Abhydrolase_4	PF08386.5	gi|408404050|ref|YP_006862033.1|	-	0.0046	16.8	0.0	0.0086	15.9	0.0	1.4	1	0	0	1	1	1	1	TAP-like	protein
UPF0227	PF05728.7	gi|408404050|ref|YP_006862033.1|	-	0.018	14.8	0.0	0.024	14.3	0.0	1.4	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0227)
BAAT_C	PF08840.6	gi|408404050|ref|YP_006862033.1|	-	0.018	14.7	0.0	0.041	13.5	0.0	1.6	1	1	0	1	1	1	0	BAAT	/	Acyl-CoA	thioester	hydrolase	C	terminal
Peptidase_S9	PF00326.16	gi|408404050|ref|YP_006862033.1|	-	0.093	11.9	0.0	0.76	8.9	0.0	2.1	1	1	0	1	1	1	0	Prolyl	oligopeptidase	family
PAF-AH_p_II	PF03403.8	gi|408404050|ref|YP_006862033.1|	-	0.11	10.7	0.0	0.3	9.3	0.0	1.7	2	0	0	2	2	2	0	Platelet-activating	factor	acetylhydrolase,	isoform	II
Peptidase_S10	PF00450.17	gi|408404050|ref|YP_006862033.1|	-	0.15	11.1	0.0	0.32	10.0	0.0	1.5	2	0	0	2	2	2	0	Serine	carboxypeptidase
RVT_3	PF13456.1	gi|408404051|ref|YP_006862034.1|	-	0.00014	21.5	0.2	0.00023	20.8	0.1	1.3	1	0	0	1	1	1	1	Reverse	transcriptase-like
CAAP1	PF15335.1	gi|408404051|ref|YP_006862034.1|	-	0.0034	17.5	0.3	0.0059	16.7	0.2	1.4	1	0	0	1	1	1	1	Caspase	activity	and	apoptosis	inhibitor	1
RNase_H	PF00075.19	gi|408404051|ref|YP_006862034.1|	-	0.034	14.4	0.0	0.064	13.5	0.0	1.5	1	1	0	1	1	1	0	RNase	H
zf-CCHC_2	PF13696.1	gi|408404052|ref|YP_006862035.1|	-	0.047	13.1	0.2	0.047	13.1	0.2	1.8	2	0	0	2	2	2	0	Zinc	knuckle
OrfB_Zn_ribbon	PF07282.6	gi|408404052|ref|YP_006862035.1|	-	0.2	11.3	1.3	0.28	10.8	0.9	1.2	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
PhnA_Zn_Ribbon	PF08274.7	gi|408404052|ref|YP_006862035.1|	-	0.53	10.1	4.0	1.6	8.5	2.8	1.8	1	1	0	1	1	1	0	PhnA	Zinc-Ribbon
Prim_Zn_Ribbon	PF08273.7	gi|408404052|ref|YP_006862035.1|	-	5.2	7.2	10.3	13	5.9	7.1	1.6	1	1	0	1	1	1	0	Zinc-binding	domain	of	primase-helicase
RRN7	PF11781.3	gi|408404052|ref|YP_006862035.1|	-	8.2	6.0	9.9	29	4.2	6.9	1.8	1	1	0	1	1	1	0	RNA	polymerase	I-specific	transcription	initiation	factor	Rrn7
OrfB_Zn_ribbon	PF07282.6	gi|408404053|ref|YP_006862036.1|	-	7e-25	86.4	0.3	9.3e-25	86.0	0.2	1.2	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
Rubredoxin	PF00301.15	gi|408404053|ref|YP_006862036.1|	-	0.06	13.2	0.5	6.9	6.6	0.0	2.4	2	0	0	2	2	2	0	Rubredoxin
STAS	PF01740.16	gi|408404053|ref|YP_006862036.1|	-	0.061	12.7	0.0	0.1	12.0	0.0	1.3	1	0	0	1	1	1	0	STAS	domain
Zn_Tnp_IS1595	PF12760.2	gi|408404053|ref|YP_006862036.1|	-	0.061	13.1	0.3	0.15	11.9	0.2	1.7	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
zf-RanBP	PF00641.13	gi|408404053|ref|YP_006862036.1|	-	0.36	9.9	2.9	1.8	7.7	0.1	2.6	2	0	0	2	2	2	0	Zn-finger	in	Ran	binding	protein	and	others
zf-CSL	PF05207.8	gi|408404053|ref|YP_006862036.1|	-	0.9	9.0	3.6	2.4	7.7	2.5	1.7	1	1	0	1	1	1	0	CSL	zinc	finger
OrfB_IS605	PF01385.14	gi|408404054|ref|YP_006862037.1|	-	0.00019	20.9	0.0	0.00019	20.9	0.0	1.0	1	0	0	1	1	1	1	Probable	transposase
HTH_OrfB_IS605	PF12323.3	gi|408404055|ref|YP_006862038.1|	-	4.4e-12	45.1	0.1	1.1e-11	43.8	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
Rrf2	PF02082.15	gi|408404056|ref|YP_006862039.1|	-	0.0095	16.0	0.0	0.022	14.8	0.0	1.6	2	0	0	2	2	2	1	Transcriptional	regulator
TrmB	PF01978.14	gi|408404056|ref|YP_006862039.1|	-	0.012	15.2	0.1	0.017	14.8	0.0	1.2	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_36	PF13730.1	gi|408404056|ref|YP_006862039.1|	-	0.05	13.7	0.5	0.086	12.9	0.1	1.6	2	0	0	2	2	2	0	Helix-turn-helix	domain
DUF342	PF03961.8	gi|408404057|ref|YP_006862040.1|	-	0.03	12.7	1.7	0.033	12.6	1.2	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF342)
DUF3841	PF12952.2	gi|408404057|ref|YP_006862040.1|	-	0.053	12.9	1.4	0.067	12.6	1.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3841)
Rapamycin_bind	PF08771.6	gi|408404057|ref|YP_006862040.1|	-	0.053	13.5	0.9	0.072	13.1	0.6	1.3	1	0	0	1	1	1	0	Rapamycin	binding	domain
RFC1	PF08519.7	gi|408404057|ref|YP_006862040.1|	-	0.068	12.9	1.9	0.082	12.6	1.3	1.3	1	1	0	1	1	1	0	Replication	factor	RFC1	C	terminal	domain
p25-alpha	PF05517.7	gi|408404057|ref|YP_006862040.1|	-	0.13	12.4	0.6	2.2	8.5	0.0	2.0	1	1	1	2	2	2	0	p25-alpha
V_ATPase_I	PF01496.14	gi|408404057|ref|YP_006862040.1|	-	0.35	8.6	3.2	0.36	8.6	2.2	1.0	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
Occludin_ELL	PF07303.8	gi|408404057|ref|YP_006862040.1|	-	0.54	11.0	6.1	0.89	10.3	4.2	1.5	1	1	0	1	1	1	0	Occludin	homology	domain
YgaB	PF14182.1	gi|408404057|ref|YP_006862040.1|	-	0.57	10.4	5.2	1.3	9.3	3.6	1.7	1	1	0	1	1	1	0	YgaB-like	protein
Copper-bind	PF00127.15	gi|408404060|ref|YP_006862043.1|	-	5.5e-11	42.5	0.0	7.6e-11	42.1	0.0	1.2	1	0	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
Cupredoxin_1	PF13473.1	gi|408404060|ref|YP_006862043.1|	-	2.1e-06	27.5	0.0	4.6e-06	26.4	0.0	1.6	1	1	0	1	1	1	1	Cupredoxin-like	domain
Cytochrom_B_N_2	PF13631.1	gi|408404061|ref|YP_006862044.1|	-	1e-24	87.2	11.1	1e-24	87.2	7.7	3.7	3	1	0	3	3	3	1	Cytochrome	b(N-terminal)/b6/petB
Cytochrom_B_C	PF00032.12	gi|408404061|ref|YP_006862044.1|	-	1.2e-08	35.0	2.3	1.2e-08	35.0	1.6	3.9	4	1	1	5	5	5	1	Cytochrome	b(C-terminal)/b6/petD
DUF4220	PF13968.1	gi|408404061|ref|YP_006862044.1|	-	3.9	6.4	8.2	0.11	11.5	0.2	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4220)
Rieske	PF00355.21	gi|408404062|ref|YP_006862045.1|	-	1.3e-08	34.3	0.2	2.5e-08	33.3	0.1	1.6	1	1	0	1	1	1	1	Rieske	[2Fe-2S]	domain
Pentapeptide	PF00805.17	gi|408404063|ref|YP_006862046.1|	-	1.1e-33	113.9	36.0	1.5e-10	40.0	0.1	4.7	1	1	4	6	6	6	5	Pentapeptide	repeats	(8	copies)
Pentapeptide_4	PF13599.1	gi|408404063|ref|YP_006862046.1|	-	7.4e-15	54.5	1.1	6.2e-08	32.3	0.2	2.6	1	1	2	3	3	3	2	Pentapeptide	repeats	(9	copies)
Pentapeptide_3	PF13576.1	gi|408404063|ref|YP_006862046.1|	-	3.5e-09	36.4	0.0	0.0014	18.4	0.0	3.6	1	1	1	2	2	2	2	Pentapeptide	repeats	(9	copies)
TP_methylase	PF00590.15	gi|408404064|ref|YP_006862047.1|	-	1.4e-15	57.6	0.0	3.6e-15	56.2	0.0	1.7	2	0	0	2	2	2	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
DUF357	PF04010.8	gi|408404064|ref|YP_006862047.1|	-	1.7e-09	37.2	0.1	3.6e-09	36.1	0.1	1.6	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF357)
HEPN	PF05168.9	gi|408404064|ref|YP_006862047.1|	-	0.11	12.3	0.0	0.26	11.1	0.0	1.7	1	0	0	1	1	1	0	HEPN	domain
Peptidase_M20	PF01546.23	gi|408404065|ref|YP_006862048.1|	-	3.1e-29	101.8	0.1	3.9e-29	101.4	0.0	1.1	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.9	gi|408404065|ref|YP_006862048.1|	-	3.1e-14	52.6	0.0	5.3e-14	51.9	0.0	1.4	1	0	0	1	1	1	1	Peptidase	dimerisation	domain
Peptidase_M42	PF05343.9	gi|408404065|ref|YP_006862048.1|	-	0.00013	20.8	0.3	0.11	11.2	0.0	2.8	1	1	1	3	3	3	2	M42	glutamyl	aminopeptidase
Peptidase_M28	PF04389.12	gi|408404065|ref|YP_006862048.1|	-	0.0018	18.0	0.1	0.0046	16.7	0.0	1.8	2	0	0	2	2	2	1	Peptidase	family	M28
RimK	PF08443.6	gi|408404066|ref|YP_006862049.1|	-	5.8e-47	159.6	0.0	7.7e-47	159.2	0.0	1.2	1	0	0	1	1	1	1	RimK-like	ATP-grasp	domain
ATP-grasp_4	PF13535.1	gi|408404066|ref|YP_006862049.1|	-	6.1e-12	45.6	0.1	1.1e-11	44.7	0.0	1.4	1	0	0	1	1	1	1	ATP-grasp	domain
GSH-S_ATP	PF02955.11	gi|408404066|ref|YP_006862049.1|	-	1.5e-09	37.1	0.0	2.2e-09	36.6	0.0	1.2	1	0	0	1	1	1	1	Prokaryotic	glutathione	synthetase,	ATP-grasp	domain
ATPgrasp_Ter	PF15632.1	gi|408404066|ref|YP_006862049.1|	-	8e-08	31.3	0.1	8.3e-07	28.0	0.1	2.0	1	1	0	1	1	1	1	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
ATP-grasp_3	PF02655.9	gi|408404066|ref|YP_006862049.1|	-	8.4e-08	32.2	0.0	1.7e-07	31.2	0.0	1.5	2	0	0	2	2	2	1	ATP-grasp	domain
CPSase_L_D2	PF02786.12	gi|408404066|ref|YP_006862049.1|	-	1.7e-07	30.7	0.1	9e-07	28.3	0.1	2.2	2	1	0	2	2	2	1	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
ATP-grasp	PF02222.17	gi|408404066|ref|YP_006862049.1|	-	1.4e-05	24.5	0.0	3.3e-05	23.2	0.0	1.6	1	1	0	1	1	1	1	ATP-grasp	domain
ATP-grasp_5	PF13549.1	gi|408404066|ref|YP_006862049.1|	-	0.012	14.8	0.0	0.022	13.9	0.0	1.4	1	0	0	1	1	1	0	ATP-grasp	domain
Dala_Dala_lig_C	PF07478.8	gi|408404066|ref|YP_006862049.1|	-	0.047	13.0	0.0	7.4	5.8	0.0	2.2	2	0	0	2	2	2	0	D-ala	D-ala	ligase	C-terminus
GARS_A	PF01071.14	gi|408404066|ref|YP_006862049.1|	-	0.048	13.2	0.0	0.079	12.5	0.0	1.3	1	0	0	1	1	1	0	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
zinc_ribbon_4	PF13717.1	gi|408404067|ref|YP_006862050.1|	-	1.9e-07	30.6	5.4	2.7e-05	23.7	1.6	2.3	2	1	1	3	3	2	2	zinc-ribbon	domain
zinc_ribbon_5	PF13719.1	gi|408404067|ref|YP_006862050.1|	-	2.5e-07	30.1	2.2	0.0057	16.2	0.2	2.4	1	1	1	2	2	2	2	zinc-ribbon	domain
zf-ribbon_3	PF13248.1	gi|408404067|ref|YP_006862050.1|	-	1.5e-05	23.9	0.6	0.074	12.2	0.0	2.2	2	0	0	2	2	2	2	zinc-ribbon	domain
HypA	PF01155.14	gi|408404067|ref|YP_006862050.1|	-	0.00011	21.8	0.2	0.00012	21.7	0.2	1.0	1	0	0	1	1	1	1	Hydrogenase	expression/synthesis	hypA	family
Prok-RING_1	PF14446.1	gi|408404067|ref|YP_006862050.1|	-	0.00014	21.4	3.4	0.00048	19.7	2.3	1.7	1	1	0	1	1	1	1	Prokaryotic	RING	finger	family	1
zf-HYPF	PF07503.7	gi|408404067|ref|YP_006862050.1|	-	0.00016	21.0	1.5	0.0016	17.8	1.0	2.0	1	1	0	1	1	1	1	HypF	finger
zinc_ribbon_2	PF13240.1	gi|408404067|ref|YP_006862050.1|	-	0.00028	20.2	1.2	0.21	11.1	0.1	2.2	2	0	0	2	2	2	2	zinc-ribbon	domain
PhnA_Zn_Ribbon	PF08274.7	gi|408404067|ref|YP_006862050.1|	-	0.00038	20.1	0.7	0.27	11.0	0.0	2.1	2	0	0	2	2	2	2	PhnA	Zinc-Ribbon
UPF0547	PF10571.4	gi|408404067|ref|YP_006862050.1|	-	0.00052	19.6	4.1	0.035	13.7	0.2	2.2	2	0	0	2	2	2	1	Uncharacterised	protein	family	UPF0547
zf-C4_Topoisom	PF01396.14	gi|408404067|ref|YP_006862050.1|	-	0.0013	18.1	1.3	0.73	9.3	0.2	2.1	2	0	0	2	2	2	2	Topoisomerase	DNA	binding	C4	zinc	finger
zf-IS66	PF13005.2	gi|408404067|ref|YP_006862050.1|	-	0.0015	18.4	1.1	0.083	12.8	0.1	2.3	2	1	0	2	2	2	1	zinc-finger	binding	domain	of	transposase	IS66
TerY-C	PF15616.1	gi|408404067|ref|YP_006862050.1|	-	0.0021	17.9	0.6	0.036	14.0	0.4	2.0	1	1	0	1	1	1	1	TerY-C	metal	binding	domain
Zn_Tnp_IS1	PF03811.8	gi|408404067|ref|YP_006862050.1|	-	0.0051	16.2	0.8	2.3	7.7	0.1	2.2	2	0	0	2	2	2	1	InsA	N-terminal	domain
TF_Zn_Ribbon	PF08271.7	gi|408404067|ref|YP_006862050.1|	-	0.0059	15.9	3.6	0.01	15.0	2.5	1.4	1	1	0	1	1	1	1	TFIIB	zinc-binding
OrfB_Zn_ribbon	PF07282.6	gi|408404067|ref|YP_006862050.1|	-	0.0076	15.8	0.3	0.011	15.4	0.2	1.2	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
Lar_restr_allev	PF14354.1	gi|408404067|ref|YP_006862050.1|	-	0.0078	16.5	1.8	0.58	10.4	0.1	2.0	1	1	1	2	2	2	1	Restriction	alleviation	protein	Lar
Ribosomal_S27e	PF01667.12	gi|408404067|ref|YP_006862050.1|	-	0.012	15.1	1.8	0.026	14.0	1.3	1.6	1	1	0	1	1	1	0	Ribosomal	protein	S27
DZR	PF12773.2	gi|408404067|ref|YP_006862050.1|	-	0.012	15.3	0.9	0.025	14.3	0.6	1.5	1	1	0	1	1	1	0	Double	zinc	ribbon
DUF329	PF03884.9	gi|408404067|ref|YP_006862050.1|	-	0.013	15.0	2.6	1.1	8.8	0.2	2.2	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF329)
zf-TFIIB	PF13453.1	gi|408404067|ref|YP_006862050.1|	-	0.014	14.5	2.5	0.021	14.0	1.7	1.3	1	0	0	1	1	1	0	Transcription	factor	zinc-finger
A2L_zn_ribbon	PF08792.5	gi|408404067|ref|YP_006862050.1|	-	0.018	14.5	1.7	0.11	11.9	0.1	2.1	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
DNA_ligase_ZBD	PF03119.11	gi|408404067|ref|YP_006862050.1|	-	0.018	14.7	4.3	1.1	9.0	0.5	2.4	2	1	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
ADK_lid	PF05191.9	gi|408404067|ref|YP_006862050.1|	-	0.024	14.3	0.6	0.081	12.5	0.0	2.0	2	0	0	2	2	2	0	Adenylate	kinase,	active	site	lid
Zn-ribbon_8	PF09723.5	gi|408404067|ref|YP_006862050.1|	-	0.034	14.0	4.4	0.22	11.5	3.0	2.0	1	1	0	1	1	1	0	Zinc	ribbon	domain
zinc-ribbons_6	PF07191.7	gi|408404067|ref|YP_006862050.1|	-	0.037	13.8	1.1	0.097	12.4	0.8	1.6	1	1	0	1	1	1	0	zinc-ribbons
DNA_RNApol_7kD	PF03604.8	gi|408404067|ref|YP_006862050.1|	-	0.042	13.3	3.6	0.21	11.0	2.5	2.0	1	1	0	1	1	1	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
DUF164	PF02591.10	gi|408404067|ref|YP_006862050.1|	-	0.043	13.6	4.0	0.46	10.3	0.1	2.2	1	1	1	2	2	2	0	Putative	zinc	ribbon	domain
zf-RING_3	PF14369.1	gi|408404067|ref|YP_006862050.1|	-	0.044	13.7	3.9	0.19	11.7	2.8	1.8	1	1	1	2	2	2	0	zinc-finger
zf-CSL	PF05207.8	gi|408404067|ref|YP_006862050.1|	-	0.047	13.2	2.3	0.093	12.2	1.6	1.6	1	1	0	1	1	1	0	CSL	zinc	finger
CpXC	PF14353.1	gi|408404067|ref|YP_006862050.1|	-	0.049	13.5	1.5	4.2	7.3	0.1	2.1	1	1	1	2	2	2	0	CpXC	protein
COX5B	PF01215.14	gi|408404067|ref|YP_006862050.1|	-	0.057	13.0	0.4	0.17	11.5	0.0	1.7	1	1	1	2	2	2	0	Cytochrome	c	oxidase	subunit	Vb
Sgf11	PF08209.6	gi|408404067|ref|YP_006862050.1|	-	0.062	12.6	1.0	5.1	6.5	0.0	2.1	2	0	0	2	2	2	0	Sgf11	(transcriptional	regulation	protein)
zf-H2C2_2	PF13465.1	gi|408404067|ref|YP_006862050.1|	-	0.07	13.4	1.0	7.7	7.0	0.0	2.1	2	0	0	2	2	2	0	Zinc-finger	double	domain
Ogr_Delta	PF04606.7	gi|408404067|ref|YP_006862050.1|	-	0.095	12.3	1.2	7	6.3	0.1	2.1	2	0	0	2	2	2	0	Ogr/Delta-like	zinc	finger
IBR	PF01485.16	gi|408404067|ref|YP_006862050.1|	-	0.098	12.5	0.5	0.14	12.0	0.3	1.3	1	0	0	1	1	1	0	IBR	domain
Zn_ribbon_recom	PF13408.1	gi|408404067|ref|YP_006862050.1|	-	0.1	12.8	0.1	1.5	9.1	0.0	2.0	2	0	0	2	2	2	0	Recombinase	zinc	beta	ribbon	domain
DUF35_N	PF12172.3	gi|408404067|ref|YP_006862050.1|	-	0.11	12.4	0.5	6.3	6.8	0.0	2.2	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
zf-C2H2_6	PF13912.1	gi|408404067|ref|YP_006862050.1|	-	0.12	12.3	0.2	4.3	7.3	0.0	2.1	2	0	0	2	2	2	0	C2H2-type	zinc	finger
zf-ISL3	PF14690.1	gi|408404067|ref|YP_006862050.1|	-	0.12	12.4	0.2	4.1	7.5	0.0	2.1	2	0	0	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
Mu-like_Com	PF10122.4	gi|408404067|ref|YP_006862050.1|	-	0.14	11.2	0.4	1.7	7.7	0.0	2.0	1	1	1	2	2	2	0	Mu-like	prophage	protein	Com
DUF3797	PF12677.2	gi|408404067|ref|YP_006862050.1|	-	0.16	11.5	2.9	1.3	8.7	0.0	2.2	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3797)
zf-NADH-PPase	PF09297.6	gi|408404067|ref|YP_006862050.1|	-	0.17	11.3	0.8	12	5.5	0.1	2.3	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
zf-C2H2_3	PF13878.1	gi|408404067|ref|YP_006862050.1|	-	0.19	11.3	0.5	2.8	7.5	0.0	2.1	2	0	0	2	2	2	0	zinc-finger	of	acetyl-transferase	ESCO
zf-C2H2	PF00096.21	gi|408404067|ref|YP_006862050.1|	-	0.23	11.9	0.8	5.2	7.6	0.0	2.1	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
zf-tcix	PF14952.1	gi|408404067|ref|YP_006862050.1|	-	0.26	10.6	1.9	5.4	6.4	0.1	2.1	2	0	0	2	2	2	0	Putative	treble-clef,	zinc-finger,	Zn-binding
Zn_Tnp_IS1595	PF12760.2	gi|408404067|ref|YP_006862050.1|	-	0.3	10.9	3.3	2.4	8.0	0.1	2.1	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
DUF2387	PF09526.5	gi|408404067|ref|YP_006862050.1|	-	0.31	10.9	2.3	0.42	10.5	1.6	1.3	1	1	0	1	1	1	0	Probable	metal-binding	protein	(DUF2387)
Rubredoxin	PF00301.15	gi|408404067|ref|YP_006862050.1|	-	0.4	10.5	5.4	4.8	7.1	0.3	2.4	2	1	0	2	2	2	0	Rubredoxin
RRN7	PF11781.3	gi|408404067|ref|YP_006862050.1|	-	0.48	9.9	2.4	1	8.9	0.1	2.0	1	1	1	2	2	2	0	RNA	polymerase	I-specific	transcription	initiation	factor	Rrn7
HMGL-like	PF00682.14	gi|408404068|ref|YP_006862051.1|	-	2.2e-64	217.3	1.2	3e-64	216.9	0.8	1.1	1	0	0	1	1	1	1	HMGL-like
Lyase_1	PF00206.15	gi|408404069|ref|YP_006862052.1|	-	1.2e-52	179.0	1.4	3.7e-52	177.4	0.0	1.9	2	0	0	2	2	2	1	Lyase
ASL_C2	PF14698.1	gi|408404069|ref|YP_006862052.1|	-	4e-12	46.0	0.1	1.3e-11	44.3	0.0	1.9	2	0	0	2	2	2	1	Argininosuccinate	lyase	C-terminal
DUF354	PF04007.7	gi|408404071|ref|YP_006862054.1|	-	6.2e-49	166.6	0.0	7.4e-49	166.4	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF354)
LpxB	PF02684.10	gi|408404071|ref|YP_006862054.1|	-	0.0026	16.4	0.1	0.0035	16.0	0.0	1.2	1	0	0	1	1	1	1	Lipid-A-disaccharide	synthetase
Epimerase_2	PF02350.14	gi|408404071|ref|YP_006862054.1|	-	0.037	12.7	0.0	0.2	10.3	0.0	1.9	2	0	0	2	2	2	0	UDP-N-acetylglucosamine	2-epimerase
Glyco_trans_1_3	PF13528.1	gi|408404071|ref|YP_006862054.1|	-	0.062	12.4	0.0	8.3	5.4	0.0	2.2	2	0	0	2	2	2	0	Glycosyl	transferase	family	1
Usp	PF00582.21	gi|408404071|ref|YP_006862054.1|	-	0.081	13.1	0.0	0.31	11.2	0.0	2.0	2	0	0	2	2	2	0	Universal	stress	protein	family
Glyco_tran_28_C	PF04101.11	gi|408404071|ref|YP_006862054.1|	-	0.087	12.4	0.2	0.27	10.8	0.1	1.8	1	1	0	1	1	1	0	Glycosyltransferase	family	28	C-terminal	domain
RNase_P_Rpp14	PF01900.14	gi|408404072|ref|YP_006862055.1|	-	0.1	12.5	0.0	0.36	10.7	0.0	1.9	2	0	0	2	2	2	0	Rpp14/Pop5	family
CutA1	PF03091.10	gi|408404073|ref|YP_006862056.1|	-	6.1e-30	102.8	0.0	7e-30	102.7	0.0	1.0	1	0	0	1	1	1	1	CutA1	divalent	ion	tolerance	protein
ABC_tran_2	PF12848.2	gi|408404073|ref|YP_006862056.1|	-	0.05	13.4	0.1	0.068	13.0	0.1	1.2	1	0	0	1	1	1	0	ABC	transporter
AMP-binding_C	PF13193.1	gi|408404073|ref|YP_006862056.1|	-	0.061	14.2	0.0	0.12	13.3	0.0	1.4	1	1	0	1	1	1	0	AMP-binding	enzyme	C-terminal	domain
eRF1_1	PF03463.10	gi|408404074|ref|YP_006862057.1|	-	6.7e-21	74.2	0.5	1.5e-20	73.1	0.4	1.5	1	0	0	1	1	1	1	eRF1	domain	1
eRF1_3	PF03465.10	gi|408404074|ref|YP_006862057.1|	-	7.6e-12	45.4	0.9	2.5e-11	43.8	0.2	2.2	3	0	0	3	3	3	1	eRF1	domain	3
eRF1_2	PF03464.10	gi|408404074|ref|YP_006862057.1|	-	5.7e-10	39.6	0.1	1.2e-09	38.5	0.0	1.6	1	0	0	1	1	1	1	eRF1	domain	2
T2SE_Nter	PF05157.10	gi|408404075|ref|YP_006862058.1|	-	0.023	14.7	0.0	0.046	13.7	0.0	1.5	2	0	0	2	2	2	0	Type	II	secretion	system	(T2SS),	protein	E,	N-terminal	domain
Fe_dep_repr_C	PF02742.10	gi|408404076|ref|YP_006862059.1|	-	8.8e-21	73.3	0.5	1.4e-20	72.7	0.3	1.4	1	0	0	1	1	1	1	Iron	dependent	repressor,	metal	binding	and	dimerisation	domain
Fe_dep_repress	PF01325.14	gi|408404076|ref|YP_006862059.1|	-	5.8e-14	51.7	0.4	1.1e-13	50.9	0.3	1.3	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
MarR_2	PF12802.2	gi|408404076|ref|YP_006862059.1|	-	7.2e-05	22.3	0.0	0.00012	21.6	0.0	1.4	1	0	0	1	1	1	1	MarR	family
Rrf2	PF02082.15	gi|408404076|ref|YP_006862059.1|	-	0.00049	20.1	0.1	0.00083	19.4	0.0	1.4	1	0	0	1	1	1	1	Transcriptional	regulator
MarR	PF01047.17	gi|408404076|ref|YP_006862059.1|	-	0.00082	19.0	0.0	0.0014	18.3	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_5	PF01022.15	gi|408404076|ref|YP_006862059.1|	-	0.0034	17.0	0.1	0.01	15.4	0.0	1.9	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
HTH_27	PF13463.1	gi|408404076|ref|YP_006862059.1|	-	0.0053	17.0	0.0	0.0092	16.2	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_1	PF00126.22	gi|408404076|ref|YP_006862059.1|	-	0.0075	15.9	0.0	0.018	14.8	0.0	1.6	1	1	0	1	1	1	1	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
HTH_Crp_2	PF13545.1	gi|408404076|ref|YP_006862059.1|	-	0.0076	16.0	0.0	0.014	15.1	0.0	1.4	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_45	PF14947.1	gi|408404076|ref|YP_006862059.1|	-	0.015	15.0	0.0	0.025	14.4	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn-helix
HTH_6	PF01418.12	gi|408404076|ref|YP_006862059.1|	-	0.023	14.3	0.0	0.046	13.4	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain,	rpiR	family
HTH_37	PF13744.1	gi|408404076|ref|YP_006862059.1|	-	0.027	14.2	0.0	0.055	13.2	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
TrmB	PF01978.14	gi|408404076|ref|YP_006862059.1|	-	0.03	14.0	0.2	0.05	13.3	0.1	1.4	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
IF2_N	PF04760.10	gi|408404076|ref|YP_006862059.1|	-	0.03	13.9	0.4	0.15	11.7	0.0	2.1	2	1	0	2	2	2	0	Translation	initiation	factor	IF-2,	N-terminal	region
NLPC_P60	PF00877.14	gi|408404076|ref|YP_006862059.1|	-	0.067	13.0	0.0	0.2	11.5	0.0	1.7	1	1	1	2	2	2	0	NlpC/P60	family
HTH_IclR	PF09339.5	gi|408404076|ref|YP_006862059.1|	-	0.075	12.6	0.0	0.17	11.5	0.0	1.6	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
TFIIE_beta	PF02186.10	gi|408404076|ref|YP_006862059.1|	-	0.085	12.8	0.1	0.2	11.6	0.0	1.6	2	0	0	2	2	2	0	TFIIE	beta	subunit	core	domain
TrmB	PF01978.14	gi|408404077|ref|YP_006862060.1|	-	2.7e-23	81.4	0.0	8.2e-23	79.8	0.0	1.9	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
Regulator_TrmB	PF11495.3	gi|408404077|ref|YP_006862060.1|	-	1e-08	34.4	0.0	1.4e-08	33.9	0.0	1.2	1	0	0	1	1	1	1	Archaeal	transcriptional	regulator	TrmB
HTH_IclR	PF09339.5	gi|408404077|ref|YP_006862060.1|	-	2.4e-05	23.8	0.0	5e-05	22.8	0.0	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR	PF01047.17	gi|408404077|ref|YP_006862060.1|	-	0.00018	21.1	0.0	0.00042	19.9	0.0	1.6	1	0	0	1	1	1	1	MarR	family
HTH_27	PF13463.1	gi|408404077|ref|YP_006862060.1|	-	0.00027	21.2	0.0	0.00063	20.0	0.0	1.7	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_24	PF13412.1	gi|408404077|ref|YP_006862060.1|	-	0.00066	19.0	0.0	0.0012	18.1	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_36	PF13730.1	gi|408404077|ref|YP_006862060.1|	-	0.0023	18.0	0.2	0.0055	16.8	0.1	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_29	PF13551.1	gi|408404077|ref|YP_006862060.1|	-	0.0089	16.1	0.5	0.035	14.2	0.0	2.3	2	1	0	2	2	2	1	Winged	helix-turn	helix
Rrf2	PF02082.15	gi|408404077|ref|YP_006862060.1|	-	0.015	15.3	0.0	0.033	14.2	0.0	1.5	1	0	0	1	1	1	0	Transcriptional	regulator
MarR_2	PF12802.2	gi|408404077|ref|YP_006862060.1|	-	0.016	14.8	0.0	0.032	13.9	0.0	1.5	1	0	0	1	1	1	0	MarR	family
Penicillinase_R	PF03965.11	gi|408404077|ref|YP_006862060.1|	-	0.018	15.1	0.0	0.049	13.7	0.0	1.8	2	0	0	2	2	2	0	Penicillinase	repressor
PadR	PF03551.9	gi|408404077|ref|YP_006862060.1|	-	0.043	13.5	0.1	0.16	11.7	0.0	2.0	3	0	0	3	3	3	0	Transcriptional	regulator	PadR-like	family
HTH_9	PF08221.6	gi|408404077|ref|YP_006862060.1|	-	0.1	12.4	0.0	0.21	11.4	0.0	1.4	1	0	0	1	1	1	0	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
FaeA	PF04703.7	gi|408404077|ref|YP_006862060.1|	-	0.13	12.3	0.3	0.55	10.4	0.0	2.2	2	1	0	2	2	2	0	FaeA-like	protein
Radical_SAM	PF04055.16	gi|408404078|ref|YP_006862061.1|	-	5.2e-18	65.7	0.1	5.2e-18	65.7	0.0	2.7	3	0	0	3	3	3	1	Radical	SAM	superfamily
Fer4_12	PF13353.1	gi|408404078|ref|YP_006862061.1|	-	7.9e-09	35.7	0.0	2.2e-08	34.2	0.0	1.8	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_14	PF13394.1	gi|408404078|ref|YP_006862061.1|	-	4.9e-08	33.0	0.0	4.9e-08	33.0	0.0	2.0	2	0	0	2	2	2	1	4Fe-4S	single	cluster	domain
HTH_45	PF14947.1	gi|408404079|ref|YP_006862062.1|	-	0.0009	19.0	0.0	0.002	17.9	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix
Rieske	PF00355.21	gi|408404080|ref|YP_006862063.1|	-	7e-08	31.9	0.0	1.2e-07	31.1	0.0	1.3	1	0	0	1	1	1	1	Rieske	[2Fe-2S]	domain
TAT_signal	PF10518.4	gi|408404080|ref|YP_006862063.1|	-	0.00061	19.5	0.7	0.0011	18.7	0.5	1.4	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
UCR_Fe-S_N	PF10399.4	gi|408404080|ref|YP_006862063.1|	-	0.021	13.9	0.4	0.039	13.1	0.2	1.5	1	0	0	1	1	1	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
Peptidase_M3	PF01432.15	gi|408404081|ref|YP_006862064.1|	-	2e-07	30.4	4.2	3.4e-07	29.6	0.3	2.3	1	1	0	2	2	2	2	Peptidase	family	M3
Proteasome	PF00227.21	gi|408404082|ref|YP_006862065.1|	-	1e-53	181.4	2.0	1.2e-53	181.2	1.4	1.0	1	0	0	1	1	1	1	Proteasome	subunit
Cupredoxin_1	PF13473.1	gi|408404084|ref|YP_006862067.1|	-	0.051	13.4	0.1	0.058	13.2	0.0	1.2	1	0	0	1	1	1	0	Cupredoxin-like	domain
DUF3142	PF11340.3	gi|408404084|ref|YP_006862067.1|	-	0.13	11.9	0.0	0.14	11.7	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3142)
Aconitase	PF00330.15	gi|408404085|ref|YP_006862068.1|	-	3.1e-169	563.3	0.0	3.5e-169	563.1	0.0	1.0	1	0	0	1	1	1	1	Aconitase	family	(aconitate	hydratase)
DUF521	PF04412.8	gi|408404085|ref|YP_006862068.1|	-	0.01	14.3	0.0	0.015	13.8	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF521)
Aconitase_C	PF00694.14	gi|408404086|ref|YP_006862069.1|	-	5.5e-40	136.4	0.0	7.8e-40	136.0	0.0	1.2	1	0	0	1	1	1	1	Aconitase	C-terminal	domain
Aconitase_2_N	PF06434.8	gi|408404086|ref|YP_006862069.1|	-	0.12	11.7	0.0	3.3	7.0	0.0	2.1	1	1	0	1	1	1	0	Aconitate	hydratase	2	N-terminus
Pribosyltran	PF00156.22	gi|408404087|ref|YP_006862070.1|	-	0.00068	19.3	0.0	0.0012	18.5	0.0	1.5	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
BOF	PF04076.8	gi|408404087|ref|YP_006862070.1|	-	0.034	13.9	0.0	0.091	12.6	0.0	1.7	1	0	0	1	1	1	0	Bacterial	OB	fold	(BOF)	protein
Tcell_CD4_Cterm	PF12104.3	gi|408404089|ref|YP_006862072.1|	-	0.17	11.5	0.6	1.1	8.9	0.0	2.0	2	0	0	2	2	2	0	T	cell	CD4	receptor	C	terminal	region
NT5C	PF06941.7	gi|408404090|ref|YP_006862073.1|	-	7e-12	45.2	0.0	8.9e-12	44.9	0.0	1.1	1	0	0	1	1	1	1	5'	nucleotidase,	deoxy	(Pyrimidine),	cytosolic	type	C	protein	(NT5C)
zf-C2H2_6	PF13912.1	gi|408404091|ref|YP_006862074.1|	-	0.034	14.0	0.1	0.052	13.4	0.1	1.4	1	0	0	1	1	1	0	C2H2-type	zinc	finger
zf-C2H2_3	PF13878.1	gi|408404091|ref|YP_006862074.1|	-	0.063	12.8	0.0	0.1	12.2	0.0	1.4	1	0	0	1	1	1	0	zinc-finger	of	acetyl-transferase	ESCO
C1_4	PF07975.7	gi|408404091|ref|YP_006862074.1|	-	0.065	13.2	0.7	0.092	12.7	0.4	1.3	1	1	0	1	1	1	0	TFIIH	C1-like	domain
Rep_fac-A_C	PF08646.5	gi|408404091|ref|YP_006862074.1|	-	0.067	12.8	0.3	0.068	12.8	0.2	1.2	1	0	0	1	1	1	0	Replication	factor-A	C	terminal	domain
NnrS	PF05940.7	gi|408404093|ref|YP_006862076.1|	-	0.0013	17.7	36.1	0.0029	16.5	25.0	1.5	1	1	0	1	1	1	1	NnrS	protein
DUF2583	PF10762.4	gi|408404093|ref|YP_006862076.1|	-	0.22	11.6	11.1	3.5	7.8	0.2	4.2	3	1	1	4	4	4	0	Protein	of	unknown	function	(DUF2583)
DIM	PF08194.7	gi|408404093|ref|YP_006862076.1|	-	6.6	6.7	9.1	10	6.1	0.2	3.8	2	0	0	2	2	2	0	DIM	protein
TMEM51	PF15345.1	gi|408404094|ref|YP_006862077.1|	-	0.01	15.5	0.0	0.011	15.4	0.0	1.1	1	0	0	1	1	1	0	Transmembrane	protein	51
zf-C2H2	PF00096.21	gi|408404095|ref|YP_006862078.1|	-	0.0086	16.3	0.0	0.012	15.8	0.0	1.3	1	0	0	1	1	1	1	Zinc	finger,	C2H2	type
zf-Di19	PF05605.7	gi|408404095|ref|YP_006862078.1|	-	0.015	15.4	0.2	0.028	14.5	0.1	1.3	1	1	0	1	1	1	0	Drought	induced	19	protein	(Di19),	zinc-binding
zf-C2H2_4	PF13894.1	gi|408404095|ref|YP_006862078.1|	-	0.076	13.3	0.0	0.11	12.8	0.0	1.3	1	0	0	1	1	1	0	C2H2-type	zinc	finger
Epimerase	PF01370.16	gi|408404096|ref|YP_006862079.1|	-	1.1e-22	80.6	0.0	1.7e-22	80.0	0.0	1.3	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
RmlD_sub_bind	PF04321.12	gi|408404096|ref|YP_006862079.1|	-	0.0015	17.5	0.0	0.0067	15.3	0.0	2.1	2	1	0	2	2	2	1	RmlD	substrate	binding	domain
UDPG_MGDP_dh_N	PF03721.9	gi|408404096|ref|YP_006862079.1|	-	0.012	15.0	0.0	0.022	14.1	0.0	1.5	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
UPF0146	PF03686.8	gi|408404096|ref|YP_006862079.1|	-	0.018	14.8	0.0	0.052	13.3	0.0	1.8	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0146)
Polysacc_synt_2	PF02719.10	gi|408404096|ref|YP_006862079.1|	-	0.02	13.7	0.0	0.035	13.0	0.0	1.4	1	0	0	1	1	1	0	Polysaccharide	biosynthesis	protein
DAO	PF01266.19	gi|408404096|ref|YP_006862079.1|	-	0.022	13.6	0.0	0.032	13.1	0.0	1.2	1	0	0	1	1	1	0	FAD	dependent	oxidoreductase
PIG-L	PF02585.12	gi|408404097|ref|YP_006862080.1|	-	1.2e-05	25.8	0.1	1.9e-05	25.2	0.0	1.3	1	0	0	1	1	1	1	GlcNAc-PI	de-N-acetylase
PIG-L	PF02585.12	gi|408404098|ref|YP_006862081.1|	-	1.9e-25	89.8	0.2	2.7e-25	89.3	0.1	1.2	1	0	0	1	1	1	1	GlcNAc-PI	de-N-acetylase
ATPgrasp_Ter	PF15632.1	gi|408404099|ref|YP_006862082.1|	-	1.8e-41	141.9	0.0	3.5e-41	141.0	0.0	1.4	1	1	0	1	1	1	1	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
ATP-grasp_4	PF13535.1	gi|408404099|ref|YP_006862082.1|	-	5.9e-22	78.2	0.0	8.6e-22	77.7	0.0	1.2	1	0	0	1	1	1	1	ATP-grasp	domain
ATP-grasp_3	PF02655.9	gi|408404099|ref|YP_006862082.1|	-	2.2e-13	50.4	0.0	4e-13	49.5	0.0	1.4	1	0	0	1	1	1	1	ATP-grasp	domain
CPSase_L_D2	PF02786.12	gi|408404099|ref|YP_006862082.1|	-	0.0029	16.9	0.0	0.0074	15.6	0.0	1.8	1	1	0	1	1	1	1	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
RimK	PF08443.6	gi|408404099|ref|YP_006862082.1|	-	0.0071	15.8	0.0	0.014	14.8	0.0	1.6	1	1	0	1	1	1	1	RimK-like	ATP-grasp	domain
Dala_Dala_lig_C	PF07478.8	gi|408404099|ref|YP_006862082.1|	-	0.013	14.8	0.0	0.77	9.1	0.0	2.2	1	1	0	1	1	1	0	D-ala	D-ala	ligase	C-terminus
DUF1297	PF06973.7	gi|408404099|ref|YP_006862082.1|	-	0.027	13.7	0.3	0.076	12.3	0.0	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1297)
GSH-S_ATP	PF02955.11	gi|408404099|ref|YP_006862082.1|	-	0.059	12.5	0.0	0.16	11.0	0.0	1.7	1	0	0	1	1	1	0	Prokaryotic	glutathione	synthetase,	ATP-grasp	domain
PHP	PF02811.14	gi|408404100|ref|YP_006862083.1|	-	1.3e-13	51.1	0.4	2.2e-13	50.3	0.3	1.4	1	1	0	1	1	1	1	PHP	domain
PHP_C	PF13263.1	gi|408404100|ref|YP_006862083.1|	-	0.0035	16.7	0.0	0.016	14.7	0.0	2.1	1	0	0	1	1	1	1	PHP-associated
Mo-co_dimer	PF03404.11	gi|408404101|ref|YP_006862084.1|	-	1.9e-16	59.9	3.6	2.9e-10	39.8	0.2	3.0	2	1	0	2	2	2	2	Mo-co	oxidoreductase	dimerisation	domain
F5_F8_type_C	PF00754.20	gi|408404101|ref|YP_006862084.1|	-	3.7e-15	55.8	5.9	3.7e-15	55.8	4.1	2.4	2	0	0	2	2	2	1	F5/8	type	C	domain
Big_3_4	PF13754.1	gi|408404101|ref|YP_006862084.1|	-	8.4e-09	35.6	19.3	2.9e-06	27.4	1.2	4.9	4	1	1	6	6	6	2	Bacterial	Ig-like	domain	(group	3)
Big_3_2	PF12245.3	gi|408404101|ref|YP_006862084.1|	-	0.0052	16.3	2.3	0.51	9.9	0.2	2.9	2	0	0	2	2	2	2	Bacterial	Ig-like	domain	(group	3)
HYR	PF02494.11	gi|408404101|ref|YP_006862084.1|	-	0.023	14.7	7.0	0.22	11.5	0.1	3.7	4	0	0	4	4	4	0	HYR	domain
Big_5	PF13205.1	gi|408404101|ref|YP_006862084.1|	-	0.037	14.6	19.0	0.49	11.0	6.5	3.1	2	0	0	2	2	2	0	Bacterial	Ig-like	domain
Big_3_3	PF13750.1	gi|408404101|ref|YP_006862084.1|	-	0.96	8.8	12.3	1.8	7.9	0.2	3.2	2	1	1	3	3	3	0	Bacterial	Ig-like	domain	(group	3)
GSDH	PF07995.6	gi|408404103|ref|YP_006862086.1|	-	9.3e-10	38.0	0.0	1.2e-09	37.7	0.0	1.0	1	0	0	1	1	1	1	Glucose	/	Sorbosone	dehydrogenase
PsbN	PF02468.10	gi|408404104|ref|YP_006862087.1|	-	0.82	9.3	2.5	3.7	7.2	0.4	2.1	2	0	0	2	2	2	0	Photosystem	II	reaction	centre	N	protein	(psbN)
ATPgrasp_Ter	PF15632.1	gi|408404105|ref|YP_006862088.1|	-	2.4e-38	131.6	0.0	2.2e-37	128.5	0.0	1.9	1	1	0	1	1	1	1	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
ATP-grasp_4	PF13535.1	gi|408404105|ref|YP_006862088.1|	-	2.1e-17	63.4	0.0	4e-17	62.5	0.0	1.5	1	0	0	1	1	1	1	ATP-grasp	domain
ATP-grasp_3	PF02655.9	gi|408404105|ref|YP_006862088.1|	-	1.9e-11	44.0	0.0	3.1e-10	40.1	0.0	2.6	2	1	0	2	2	2	1	ATP-grasp	domain
CPSase_L_D2	PF02786.12	gi|408404105|ref|YP_006862088.1|	-	0.00031	20.1	0.0	0.077	12.2	0.0	2.3	2	0	0	2	2	2	2	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
Dala_Dala_lig_C	PF07478.8	gi|408404105|ref|YP_006862088.1|	-	0.00034	20.0	0.0	0.00066	19.1	0.0	1.4	1	0	0	1	1	1	1	D-ala	D-ala	ligase	C-terminus
RimK	PF08443.6	gi|408404105|ref|YP_006862088.1|	-	0.0049	16.3	0.0	0.01	15.3	0.0	1.5	1	0	0	1	1	1	1	RimK-like	ATP-grasp	domain
Glyco_tranf_2_3	PF13641.1	gi|408404107|ref|YP_006862090.1|	-	1.1e-25	90.7	0.0	1.8e-25	90.0	0.0	1.3	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glycos_transf_2	PF00535.21	gi|408404107|ref|YP_006862090.1|	-	3.7e-24	85.2	0.0	5.7e-24	84.6	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_trans_2_3	PF13632.1	gi|408404107|ref|YP_006862090.1|	-	1.5e-17	63.9	0.2	1.5e-17	63.9	0.1	2.5	2	1	0	2	2	2	1	Glycosyl	transferase	family	group	2
Glyco_transf_21	PF13506.1	gi|408404107|ref|YP_006862090.1|	-	6.7e-15	54.8	0.0	1.1e-14	54.1	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	21
Glyco_tranf_2_2	PF10111.4	gi|408404107|ref|YP_006862090.1|	-	2.5e-06	26.7	0.0	4.1e-06	26.0	0.0	1.3	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Maf_N	PF08383.6	gi|408404109|ref|YP_006862092.1|	-	0.14	11.7	0.0	0.24	10.9	0.0	1.4	1	0	0	1	1	1	0	Maf	N-terminal	region
zinc_ribbon_2	PF13240.1	gi|408404109|ref|YP_006862092.1|	-	0.25	10.8	1.3	22	4.6	0.1	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
DUF892	PF05974.7	gi|408404110|ref|YP_006862093.1|	-	6.5e-17	61.7	1.4	6.5e-17	61.7	0.9	2.2	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF892)
Ferritin	PF00210.19	gi|408404110|ref|YP_006862093.1|	-	0.0011	18.6	0.2	0.0011	18.6	0.2	2.8	2	1	1	3	3	3	1	Ferritin-like	domain
zf-TFIIB	PF13453.1	gi|408404114|ref|YP_006862097.1|	-	3e-11	42.3	0.1	4.5e-11	41.7	0.1	1.3	1	0	0	1	1	1	1	Transcription	factor	zinc-finger
zf-met	PF12874.2	gi|408404115|ref|YP_006862098.1|	-	8.8e-05	22.5	0.1	0.00021	21.3	0.0	1.7	1	0	0	1	1	1	1	Zinc-finger	of	C2H2	type
zf-C2H2_jaz	PF12171.3	gi|408404115|ref|YP_006862098.1|	-	0.00012	22.1	0.1	0.00044	20.2	0.0	2.0	2	0	0	2	2	2	1	Zinc-finger	double-stranded	RNA-binding
zf-C2H2_4	PF13894.1	gi|408404115|ref|YP_006862098.1|	-	0.00024	21.2	0.1	0.0004	20.5	0.1	1.4	1	0	0	1	1	1	1	C2H2-type	zinc	finger
zf-C2H2	PF00096.21	gi|408404115|ref|YP_006862098.1|	-	0.0015	18.7	0.2	0.0025	18.0	0.1	1.4	1	0	0	1	1	1	1	Zinc	finger,	C2H2	type
zf-C2H2_6	PF13912.1	gi|408404115|ref|YP_006862098.1|	-	0.0018	18.0	0.2	0.0026	17.6	0.1	1.2	1	0	0	1	1	1	1	C2H2-type	zinc	finger
Isochorismatase	PF00857.15	gi|408404116|ref|YP_006862099.1|	-	2.4e-14	53.6	0.0	3e-14	53.3	0.0	1.1	1	0	0	1	1	1	1	Isochorismatase	family
DUF2171	PF09939.4	gi|408404118|ref|YP_006862101.1|	-	0.00025	20.9	0.0	0.00031	20.6	0.0	1.1	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2171)
DUF677	PF05055.7	gi|408404119|ref|YP_006862102.1|	-	0.04	12.5	0.3	0.049	12.2	0.2	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF677)
E7	PF00527.13	gi|408404119|ref|YP_006862102.1|	-	0.16	12.1	4.3	0.28	11.3	2.9	1.5	1	0	0	1	1	1	0	E7	protein,	Early	protein
Cytochrom_c3_2	PF14537.1	gi|408404119|ref|YP_006862102.1|	-	0.49	10.7	4.2	0.61	10.4	2.9	1.2	1	0	0	1	1	1	0	Cytochrome	c3
DUF4606	PF15379.1	gi|408404119|ref|YP_006862102.1|	-	1.7	8.7	6.1	3.8	7.6	0.4	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4606)
zinc_ribbon_6	PF14599.1	gi|408404119|ref|YP_006862102.1|	-	3.4	7.5	8.2	4.4	7.1	0.5	2.2	2	0	0	2	2	2	0	Zinc-ribbon
XPA_N	PF01286.13	gi|408404119|ref|YP_006862102.1|	-	8.6	6.1	10.0	2.1	8.0	0.5	2.8	3	0	0	3	3	3	0	XPA	protein	N-terminal
DUF2207	PF09972.4	gi|408404120|ref|YP_006862103.1|	-	0.016	13.8	0.4	0.021	13.4	0.3	1.2	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
DUF3754	PF12576.3	gi|408404120|ref|YP_006862103.1|	-	0.038	13.6	0.3	0.043	13.4	0.2	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3754)
PrgI	PF12666.2	gi|408404120|ref|YP_006862103.1|	-	0.039	14.0	0.7	0.05	13.7	0.5	1.2	1	0	0	1	1	1	0	PrgI	family	protein
LMF1	PF06762.9	gi|408404120|ref|YP_006862103.1|	-	0.061	12.1	0.0	0.064	12.0	0.0	1.0	1	0	0	1	1	1	0	Lipase	maturation	factor
Cation_ATPase_C	PF00689.16	gi|408404120|ref|YP_006862103.1|	-	0.074	12.5	3.4	0.092	12.2	2.3	1.1	1	0	0	1	1	1	0	Cation	transporting	ATPase,	C-terminus
ETRAMP	PF09716.5	gi|408404120|ref|YP_006862103.1|	-	0.15	12.0	0.2	0.26	11.2	0.0	1.5	1	1	0	1	1	1	0	Malarial	early	transcribed	membrane	protein	(ETRAMP)
PepSY_TM_2	PF13703.1	gi|408404120|ref|YP_006862103.1|	-	0.18	11.9	5.3	0.051	13.7	1.5	1.6	1	1	1	2	2	2	0	PepSY-associated	TM	helix
DUF2852	PF11014.3	gi|408404120|ref|YP_006862103.1|	-	1	9.3	7.8	2.3	8.2	0.1	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2852)
HTH_45	PF14947.1	gi|408404121|ref|YP_006862104.1|	-	6.8e-08	32.2	0.0	7.9e-08	32.0	0.0	1.0	1	0	0	1	1	1	1	Winged	helix-turn-helix
MarR	PF01047.17	gi|408404121|ref|YP_006862104.1|	-	0.00066	19.3	0.0	0.0012	18.4	0.0	1.4	1	0	0	1	1	1	1	MarR	family
Copper-bind	PF00127.15	gi|408404122|ref|YP_006862105.1|	-	7.1e-16	58.2	1.2	1.5e-14	53.9	0.9	2.2	1	1	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
Cupredoxin_1	PF13473.1	gi|408404122|ref|YP_006862105.1|	-	7.3e-13	48.3	0.0	8.4e-13	48.1	0.0	1.2	1	0	0	1	1	1	1	Cupredoxin-like	domain
ASC	PF00858.19	gi|408404123|ref|YP_006862106.1|	-	3.7	6.0	4.3	6.7	5.2	0.1	2.0	2	0	0	2	2	2	0	Amiloride-sensitive	sodium	channel
DUF4064	PF13273.1	gi|408404123|ref|YP_006862106.1|	-	4.8	7.3	6.6	18	5.5	4.6	2.0	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF4064)
DUF202	PF02656.10	gi|408404123|ref|YP_006862106.1|	-	5.4	7.3	10.5	52	4.1	6.6	2.5	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF202)
TctB	PF07331.6	gi|408404123|ref|YP_006862106.1|	-	7.4	6.2	13.6	2.1	8.0	6.8	2.0	1	1	0	1	1	1	0	Tripartite	tricarboxylate	transporter	TctB	family
DUF2530	PF10745.4	gi|408404124|ref|YP_006862107.1|	-	0.025	14.5	3.1	0.025	14.5	2.1	2.0	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2530)
Oxidored_q2	PF00420.19	gi|408404124|ref|YP_006862107.1|	-	8.2	6.1	13.0	1.4	8.5	5.0	2.3	1	1	1	2	2	2	0	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	4L
DUF3487	PF11990.3	gi|408404124|ref|YP_006862107.1|	-	9.1	5.7	9.8	0.58	9.5	0.8	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3487)
DUF3623	PF12291.3	gi|408404125|ref|YP_006862108.1|	-	0.15	10.9	5.4	0.18	10.7	3.7	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3623)
FadA	PF09403.5	gi|408404126|ref|YP_006862109.1|	-	0.026	14.5	2.3	0.045	13.7	1.5	1.6	1	1	0	1	1	1	0	Adhesion	protein	FadA
DUF2547	PF10818.3	gi|408404126|ref|YP_006862109.1|	-	0.032	14.8	1.8	1.4	9.6	0.6	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2547)
Rootletin	PF15035.1	gi|408404126|ref|YP_006862109.1|	-	0.06	13.3	1.1	0.084	12.8	0.4	1.6	1	1	1	2	2	2	0	Ciliary	rootlet	component,	centrosome	cohesion
CarboxypepD_reg	PF13620.1	gi|408404128|ref|YP_006862111.1|	-	0.0041	17.1	3.3	0.0041	17.1	2.3	2.3	1	1	0	2	2	2	1	Carboxypeptidase	regulatory-like	domain
GAPT	PF11770.3	gi|408404128|ref|YP_006862111.1|	-	0.0047	16.6	0.0	0.0053	16.4	0.0	1.1	1	0	0	1	1	1	1	GRB2-binding	adapter	(GAPT)
Dioxygenase_C	PF00775.16	gi|408404128|ref|YP_006862111.1|	-	0.0084	15.3	0.1	0.014	14.6	0.1	1.4	1	0	0	1	1	1	1	Dioxygenase
Cna_B	PF05738.8	gi|408404128|ref|YP_006862111.1|	-	0.052	13.3	13.4	0.57	9.9	9.3	2.2	1	1	0	1	1	1	0	Cna	protein	B-type	domain
DUF3446	PF11928.3	gi|408404128|ref|YP_006862111.1|	-	0.093	12.9	5.3	0.34	11.1	0.3	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3446)
Flagellin_D3	PF08884.6	gi|408404128|ref|YP_006862111.1|	-	1.5	9.0	14.8	6.7	6.9	10.3	1.9	1	1	0	1	1	1	0	Flagellin	D3	domain
TraG-D_C	PF12696.2	gi|408404128|ref|YP_006862111.1|	-	1.9	8.3	5.1	3.6	7.4	0.3	2.1	2	0	0	2	2	2	0	TraM	recognition	site	of	TraD	and	TraG
MCR_beta_N	PF02783.10	gi|408404130|ref|YP_006862113.1|	-	0.36	10.2	2.7	0.38	10.1	0.9	1.7	1	1	1	2	2	2	0	Methyl-coenzyme	M	reductase	beta	subunit,	N-terminal	domain
CBM-like	PF14683.1	gi|408404130|ref|YP_006862113.1|	-	0.41	10.2	2.7	0.44	10.1	1.9	1.1	1	0	0	1	1	1	0	Polysaccharide	lyase	family	4,	domain	III
AAA_19	PF13245.1	gi|408404130|ref|YP_006862113.1|	-	0.89	9.3	5.8	0.084	12.6	1.0	1.6	2	0	0	2	2	2	0	Part	of	AAA	domain
MSP1_C	PF07462.6	gi|408404130|ref|YP_006862113.1|	-	1.3	7.2	7.5	1.6	7.0	5.2	1.0	1	0	0	1	1	1	0	Merozoite	surface	protein	1	(MSP1)	C-terminus
ScpA_ScpB	PF02616.9	gi|408404131|ref|YP_006862114.1|	-	1.1e-16	61.1	2.1	1.9e-08	34.2	0.2	2.1	1	1	1	2	2	2	2	ScpA/B	protein
DUF1032	PF06278.6	gi|408404131|ref|YP_006862114.1|	-	0.026	13.0	0.1	0.034	12.6	0.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1032)
DUF2207	PF09972.4	gi|408404131|ref|YP_006862114.1|	-	0.044	12.3	0.0	0.051	12.1	0.0	1.1	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
DUF387	PF04079.11	gi|408404132|ref|YP_006862115.1|	-	8.9e-37	125.8	0.5	1.1e-36	125.6	0.4	1.0	1	0	0	1	1	1	1	Putative	transcriptional	regulators	(Ypuh-like)
HTH_15	PF12324.3	gi|408404132|ref|YP_006862115.1|	-	0.00069	19.2	0.0	0.04	13.5	0.0	2.4	2	0	0	2	2	2	1	Helix-turn-helix	domain	of	alkylmercury	lyase
HTH_20	PF12840.2	gi|408404132|ref|YP_006862115.1|	-	0.0033	17.1	0.1	0.055	13.2	0.0	2.3	2	0	0	2	2	2	1	Helix-turn-helix	domain
TrmB	PF01978.14	gi|408404132|ref|YP_006862115.1|	-	0.045	13.4	0.7	0.31	10.7	0.1	2.2	2	0	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
Ribosomal_S8e	PF01201.17	gi|408404133|ref|YP_006862116.1|	-	3e-29	101.8	5.7	3.3e-29	101.7	3.9	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S8e
Phage_min_tail	PF05939.8	gi|408404134|ref|YP_006862117.1|	-	0.081	12.8	0.1	0.19	11.6	0.0	1.7	2	1	0	2	2	2	0	Phage	minor	tail	protein
SRP19	PF01922.12	gi|408404135|ref|YP_006862118.1|	-	2.3e-19	69.7	0.1	2.7e-19	69.5	0.1	1.1	1	0	0	1	1	1	1	SRP19	protein
ApbA_C	PF08546.6	gi|408404135|ref|YP_006862118.1|	-	0.025	14.5	0.6	0.11	12.5	0.4	1.8	1	1	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA	C	terminal
SurA_N_3	PF13624.1	gi|408404135|ref|YP_006862118.1|	-	0.03	14.3	0.3	0.034	14.1	0.2	1.1	1	0	0	1	1	1	0	SurA	N-terminal	domain
Gar1	PF04410.9	gi|408404136|ref|YP_006862119.1|	-	4.5e-06	26.2	0.0	5.2e-06	25.9	0.0	1.1	1	0	0	1	1	1	1	Gar1/Naf1	RNA	binding	region
TFIIB	PF00382.14	gi|408404137|ref|YP_006862120.1|	-	6.4e-25	86.7	3.7	1e-11	44.4	0.0	2.3	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.7	gi|408404137|ref|YP_006862120.1|	-	8.3e-08	31.4	2.9	8.3e-08	31.4	2.0	2.0	2	0	0	2	2	2	1	TFIIB	zinc-binding
RRN7	PF11781.3	gi|408404137|ref|YP_006862120.1|	-	0.02	14.3	3.7	0.06	12.8	2.6	1.9	1	0	0	1	1	1	0	RNA	polymerase	I-specific	transcription	initiation	factor	Rrn7
IFRD	PF05004.8	gi|408404137|ref|YP_006862120.1|	-	0.022	13.8	0.1	0.034	13.2	0.1	1.2	1	0	0	1	1	1	0	Interferon-related	developmental	regulator	(IFRD)
Cyclin_C	PF02984.14	gi|408404137|ref|YP_006862120.1|	-	0.078	12.9	0.7	1.6	8.6	0.0	2.5	2	1	0	2	2	2	0	Cyclin,	C-terminal	domain
Cyclin_N	PF00134.18	gi|408404137|ref|YP_006862120.1|	-	0.087	12.3	2.1	0.19	11.2	1.2	1.8	1	1	1	2	2	2	0	Cyclin,	N-terminal	domain
NapD	PF03927.8	gi|408404137|ref|YP_006862120.1|	-	0.087	12.6	0.2	0.38	10.6	0.0	2.0	2	0	0	2	2	2	0	NapD	protein
OrfB_Zn_ribbon	PF07282.6	gi|408404137|ref|YP_006862120.1|	-	0.97	9.1	8.6	0.039	13.6	1.5	2.0	2	0	0	2	2	2	0	Putative	transposase	DNA-binding	domain
A2L_zn_ribbon	PF08792.5	gi|408404137|ref|YP_006862120.1|	-	1.3	8.6	10.4	0.92	9.0	4.3	2.3	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
zf-C4_Topoisom	PF01396.14	gi|408404137|ref|YP_006862120.1|	-	2.4	7.7	5.4	2	7.9	1.8	2.3	2	1	1	3	3	3	0	Topoisomerase	DNA	binding	C4	zinc	finger
Auto_anti-p27	PF06677.7	gi|408404137|ref|YP_006862120.1|	-	2.7	7.8	9.3	6.2	6.6	0.0	2.9	2	1	1	3	3	3	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
DZR	PF12773.2	gi|408404137|ref|YP_006862120.1|	-	3	7.7	8.5	0.19	11.5	1.3	2.1	2	0	0	2	2	2	0	Double	zinc	ribbon
Zn_ribbon_recom	PF13408.1	gi|408404137|ref|YP_006862120.1|	-	3.8	7.8	6.9	0.55	10.5	1.3	2.2	2	0	0	2	2	2	0	Recombinase	zinc	beta	ribbon	domain
Lar_restr_allev	PF14354.1	gi|408404137|ref|YP_006862120.1|	-	9.7	6.5	10.4	5.4	7.3	0.6	3.4	2	1	1	3	3	3	0	Restriction	alleviation	protein	Lar
DUF4379	PF14311.1	gi|408404138|ref|YP_006862121.1|	-	0.0039	16.9	1.4	0.0049	16.6	1.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4379)
DZR	PF12773.2	gi|408404138|ref|YP_006862121.1|	-	0.37	10.6	3.7	0.94	9.3	2.5	1.6	1	1	0	1	1	1	0	Double	zinc	ribbon
zf-RanBP	PF00641.13	gi|408404138|ref|YP_006862121.1|	-	0.75	8.9	6.8	0.37	9.9	1.0	2.0	1	1	1	2	2	2	0	Zn-finger	in	Ran	binding	protein	and	others
zinc_ribbon_2	PF13240.1	gi|408404138|ref|YP_006862121.1|	-	1.1	8.8	4.0	11	5.6	0.3	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-ribbon_3	PF13248.1	gi|408404138|ref|YP_006862121.1|	-	1.1	8.5	6.3	5.6	6.3	0.7	2.2	1	1	1	2	2	2	0	zinc-ribbon	domain
DUF3487	PF11990.3	gi|408404139|ref|YP_006862122.1|	-	0.01	15.2	2.9	0.011	15.1	2.0	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3487)
NfeD	PF01957.13	gi|408404139|ref|YP_006862122.1|	-	0.089	12.9	2.8	0.099	12.7	1.9	1.1	1	0	0	1	1	1	0	NfeD-like	C-terminal,	partner-binding
SdpI	PF13630.1	gi|408404139|ref|YP_006862122.1|	-	0.17	11.5	3.8	0.2	11.3	2.6	1.1	1	0	0	1	1	1	0	SdpI/YhfL	protein	family
SKG6	PF08693.5	gi|408404139|ref|YP_006862122.1|	-	0.22	10.8	5.3	1.8	7.9	0.1	2.1	2	0	0	2	2	2	0	Transmembrane	alpha-helix	domain
VPEP	PF07589.6	gi|408404139|ref|YP_006862122.1|	-	0.94	9.4	4.2	1.4	8.9	2.2	1.8	2	0	0	2	2	2	0	PEP-CTERM	motif
DUF3185	PF11381.3	gi|408404139|ref|YP_006862122.1|	-	1.3	8.7	13.0	0.4	10.4	3.5	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3185)
DUF2065	PF09838.4	gi|408404139|ref|YP_006862122.1|	-	6.2	6.6	9.8	1.4	8.7	1.3	2.5	2	1	1	3	3	3	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2065)
PhosphMutase	PF10143.4	gi|408404140|ref|YP_006862123.1|	-	9.2e-43	145.8	0.0	1.4e-42	145.2	0.0	1.3	1	0	0	1	1	1	1	2,3-bisphosphoglycerate-independent	phosphoglycerate	mutase
Metalloenzyme	PF01676.13	gi|408404140|ref|YP_006862123.1|	-	6.1e-27	94.6	0.0	1.3e-26	93.5	0.0	1.6	1	1	0	1	1	1	1	Metalloenzyme	superfamily
Phosphodiest	PF01663.17	gi|408404140|ref|YP_006862123.1|	-	0.00011	21.6	0.0	0.0013	18.0	0.0	2.3	2	0	0	2	2	2	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
HIT	PF01230.18	gi|408404142|ref|YP_006862125.1|	-	4.9e-12	46.2	0.0	4.7e-05	23.8	0.0	2.6	3	0	0	3	3	3	2	HIT	domain
GalP_UDP_transf	PF01087.17	gi|408404142|ref|YP_006862125.1|	-	1.1e-10	41.9	0.0	2.3e-09	37.5	0.0	2.3	2	0	0	2	2	2	1	Galactose-1-phosphate	uridyl	transferase,	N-terminal	domain
DcpS_C	PF11969.3	gi|408404142|ref|YP_006862125.1|	-	9.7e-07	29.0	0.0	0.0066	16.6	0.0	2.4	2	0	0	2	2	2	2	Scavenger	mRNA	decapping	enzyme	C-term	binding
GalP_UDP_tr_C	PF02744.12	gi|408404142|ref|YP_006862125.1|	-	0.001	18.6	0.0	0.002	17.6	0.0	1.4	1	0	0	1	1	1	1	Galactose-1-phosphate	uridyl	transferase,	C-terminal	domain
zf-Di19	PF05605.7	gi|408404142|ref|YP_006862125.1|	-	0.085	12.9	0.1	18	5.5	0.0	2.4	2	0	0	2	2	2	0	Drought	induced	19	protein	(Di19),	zinc-binding
KGG	PF10685.4	gi|408404143|ref|YP_006862126.1|	-	0.0061	16.4	5.0	7.9	6.5	0.0	3.6	3	0	0	3	3	3	3	Stress-induced	bacterial	acidophilic	repeat	motif
FAM70	PF14967.1	gi|408404144|ref|YP_006862127.1|	-	1.2	8.2	5.3	1.7	7.7	3.7	1.2	1	0	0	1	1	1	0	FAM70	protein
PrgI	PF12666.2	gi|408404145|ref|YP_006862128.1|	-	0.022	14.8	4.1	0.022	14.8	2.8	1.9	2	1	1	3	3	3	0	PrgI	family	protein
DUF4536	PF15055.1	gi|408404146|ref|YP_006862129.1|	-	0.24	11.5	0.3	0.24	11.5	0.2	2.4	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4536)
Epimerase_2	PF02350.14	gi|408404147|ref|YP_006862130.1|	-	6.1e-51	173.2	0.0	7.4e-51	172.9	0.0	1.1	1	0	0	1	1	1	1	UDP-N-acetylglucosamine	2-epimerase
DUF3976	PF13121.1	gi|408404147|ref|YP_006862130.1|	-	0.16	11.8	0.5	0.33	10.8	0.0	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3976)
NTP_transf_4	PF13562.1	gi|408404148|ref|YP_006862131.1|	-	6.2e-13	48.6	0.0	1.4e-12	47.5	0.0	1.5	2	0	0	2	2	2	1	Sugar	nucleotidyl	transferase
Hexapep	PF00132.19	gi|408404148|ref|YP_006862131.1|	-	0.15	11.6	7.9	14	5.4	0.0	5.3	4	2	2	6	6	6	0	Bacterial	transferase	hexapeptide	(six	repeats)
NTP_transferase	PF00483.18	gi|408404149|ref|YP_006862132.1|	-	4.9e-35	121.0	0.0	5.5e-35	120.8	0.0	1.0	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.2	gi|408404149|ref|YP_006862132.1|	-	5.7e-11	42.7	0.0	7.1e-11	42.4	0.0	1.2	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
CTP_transf_3	PF02348.14	gi|408404149|ref|YP_006862132.1|	-	9.4e-06	25.4	0.0	1.5e-05	24.7	0.0	1.4	1	1	0	1	1	1	1	Cytidylyltransferase
IspD	PF01128.14	gi|408404149|ref|YP_006862132.1|	-	0.0024	17.4	0.0	0.0043	16.6	0.0	1.4	1	0	0	1	1	1	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
Phos_pyr_kin	PF08543.7	gi|408404150|ref|YP_006862133.1|	-	3.6e-88	294.9	0.2	4.7e-88	294.5	0.2	1.1	1	0	0	1	1	1	1	Phosphomethylpyrimidine	kinase
Aldolase_2	PF10120.4	gi|408404150|ref|YP_006862133.1|	-	1.5e-56	190.4	0.1	4.3e-56	188.9	0.0	1.8	2	0	0	2	2	2	1	Putative	aldolase
PfkB	PF00294.19	gi|408404150|ref|YP_006862133.1|	-	2.8e-15	56.2	0.0	4.3e-15	55.6	0.0	1.2	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
HK	PF02110.10	gi|408404150|ref|YP_006862133.1|	-	4e-05	22.9	0.5	6.6e-05	22.1	0.4	1.3	1	0	0	1	1	1	1	Hydroxyethylthiazole	kinase	family
Carb_kinase	PF01256.12	gi|408404150|ref|YP_006862133.1|	-	0.027	13.7	0.1	0.041	13.1	0.1	1.4	1	0	0	1	1	1	0	Carbohydrate	kinase
MCPVI	PF02993.9	gi|408404151|ref|YP_006862134.1|	-	7.1	6.7	9.4	11	6.1	6.5	1.3	1	0	0	1	1	1	0	Minor	capsid	protein	VI
HemolysinCabind	PF00353.14	gi|408404152|ref|YP_006862135.1|	-	5e-06	26.4	27.5	0.027	14.8	4.9	5.2	4	1	0	5	5	5	4	Hemolysin-type	calcium-binding	repeat	(2	copies)
Transp_cyt_pur	PF02133.10	gi|408404153|ref|YP_006862136.1|	-	2.6e-32	111.9	38.7	5.6e-32	110.8	26.8	1.4	1	1	0	1	1	1	1	Permease	for	cytosine/purines,	uracil,	thiamine,	allantoin
ATP-grasp_2	PF08442.5	gi|408404154|ref|YP_006862137.1|	-	3.9e-40	137.3	0.0	6.8e-40	136.6	0.0	1.4	1	0	0	1	1	1	1	ATP-grasp	domain
ATP-grasp_5	PF13549.1	gi|408404154|ref|YP_006862137.1|	-	2e-13	50.1	0.0	4.7e-13	48.8	0.0	1.7	1	1	0	1	1	1	1	ATP-grasp	domain
Ligase_CoA	PF00549.14	gi|408404154|ref|YP_006862137.1|	-	2.5e-12	46.6	1.3	4.5e-12	45.8	0.9	1.4	1	0	0	1	1	1	1	CoA-ligase
ATP-grasp_4	PF13535.1	gi|408404154|ref|YP_006862137.1|	-	2.1e-05	24.3	0.0	3.7e-05	23.5	0.0	1.5	1	0	0	1	1	1	1	ATP-grasp	domain
ATP-grasp	PF02222.17	gi|408404154|ref|YP_006862137.1|	-	0.00059	19.2	0.0	0.0011	18.3	0.0	1.4	1	0	0	1	1	1	1	ATP-grasp	domain
CPSase_L_D2	PF02786.12	gi|408404154|ref|YP_006862137.1|	-	0.0032	16.7	0.0	0.0061	15.8	0.0	1.5	1	0	0	1	1	1	1	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
SDH_sah	PF01972.11	gi|408404154|ref|YP_006862137.1|	-	0.092	11.5	0.0	4.4	6.0	0.0	2.1	2	0	0	2	2	2	0	Serine	dehydrogenase	proteinase
CoA_binding	PF02629.14	gi|408404155|ref|YP_006862138.1|	-	2.6e-21	75.9	0.2	1e-20	74.0	0.1	2.0	1	0	0	1	1	1	1	CoA	binding	domain
Ligase_CoA	PF00549.14	gi|408404155|ref|YP_006862138.1|	-	4e-10	39.4	0.0	6.8e-10	38.7	0.0	1.3	1	0	0	1	1	1	1	CoA-ligase
Succ_CoA_lig	PF13607.1	gi|408404155|ref|YP_006862138.1|	-	6.7e-05	22.5	0.0	0.00011	21.7	0.0	1.4	1	0	0	1	1	1	1	Succinyl-CoA	ligase	like	flavodoxin	domain
CoA_binding_2	PF13380.1	gi|408404155|ref|YP_006862138.1|	-	0.00046	20.3	0.0	0.0012	18.9	0.0	1.7	2	0	0	2	2	2	1	CoA	binding	domain
Glu_synthase	PF01645.12	gi|408404155|ref|YP_006862138.1|	-	0.043	12.7	0.1	0.071	12.0	0.1	1.3	1	0	0	1	1	1	0	Conserved	region	in	glutamate	synthase
GFO_IDH_MocA	PF01408.17	gi|408404155|ref|YP_006862138.1|	-	0.076	13.5	0.0	0.27	11.7	0.0	1.8	2	0	0	2	2	2	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
Methyltransf_31	PF13847.1	gi|408404157|ref|YP_006862140.1|	-	0.017	14.7	0.0	0.085	12.4	0.0	1.9	2	0	0	2	2	2	0	Methyltransferase	domain
Glycos_transf_1	PF00534.15	gi|408404158|ref|YP_006862141.1|	-	4.1e-17	62.1	0.0	7.1e-17	61.3	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.1	gi|408404158|ref|YP_006862141.1|	-	2.9e-05	24.2	0.0	4.6e-05	23.5	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Na_Ca_ex	PF01699.19	gi|408404159|ref|YP_006862142.1|	-	6.7e-26	90.5	32.9	1.5e-13	50.5	6.6	2.1	2	0	0	2	2	2	2	Sodium/calcium	exchanger	protein
DUF1240	PF06836.7	gi|408404159|ref|YP_006862142.1|	-	0.24	11.6	2.5	0.95	9.7	1.7	2.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1240)
Usp	PF00582.21	gi|408404160|ref|YP_006862143.1|	-	9e-38	129.6	0.1	1e-37	129.4	0.1	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
Pox_H7	PF04787.7	gi|408404160|ref|YP_006862143.1|	-	0.038	13.7	0.0	0.049	13.4	0.0	1.1	1	0	0	1	1	1	0	Late	protein	H7
ETF	PF01012.16	gi|408404160|ref|YP_006862143.1|	-	0.062	13.0	0.1	1	9.0	0.1	2.2	1	1	0	1	1	1	0	Electron	transfer	flavoprotein	domain
CCDC-167	PF15188.1	gi|408404161|ref|YP_006862144.1|	-	0.037	13.9	0.4	0.04	13.8	0.3	1.1	1	0	0	1	1	1	0	Coiled-coil	domain-containing	protein	167
HTH_45	PF14947.1	gi|408404162|ref|YP_006862145.1|	-	0.045	13.5	0.0	0.15	11.9	0.0	1.8	2	0	0	2	2	2	0	Winged	helix-turn-helix
HTH_27	PF13463.1	gi|408404162|ref|YP_006862145.1|	-	0.11	12.8	0.0	0.34	11.2	0.0	1.7	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
UPF0147	PF03685.8	gi|408404163|ref|YP_006862146.1|	-	4.5e-22	77.7	2.3	5.2e-22	77.5	1.6	1.0	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0147)
DUF1216	PF06746.6	gi|408404163|ref|YP_006862146.1|	-	0.0027	17.4	2.6	0.85	9.3	0.4	2.1	1	1	1	2	2	2	2	Protein	of	unknown	function	(DUF1216)
Linker_histone	PF00538.14	gi|408404163|ref|YP_006862146.1|	-	0.0056	16.7	0.5	0.011	15.8	0.1	1.8	2	1	0	2	2	2	1	linker	histone	H1	and	H5	family
Arm_2	PF04826.8	gi|408404163|ref|YP_006862146.1|	-	0.026	13.6	1.7	1.5	7.8	0.3	2.0	1	1	1	2	2	2	0	Armadillo-like
DUF3107	PF11305.3	gi|408404163|ref|YP_006862146.1|	-	0.044	13.6	0.1	0.058	13.2	0.1	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3107)
YtzH	PF14165.1	gi|408404163|ref|YP_006862146.1|	-	0.12	12.6	1.4	0.63	10.3	0.5	2.1	1	1	1	2	2	2	0	YtzH-like	protein
Beta-Casp	PF10996.3	gi|408404164|ref|YP_006862147.1|	-	7e-28	97.0	0.0	1.4e-27	96.1	0.0	1.5	1	0	0	1	1	1	1	Beta-Casp	domain
Lactamase_B	PF00753.22	gi|408404164|ref|YP_006862147.1|	-	8.7e-16	58.1	0.0	1.9e-15	57.0	0.0	1.6	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
RMMBL	PF07521.7	gi|408404164|ref|YP_006862147.1|	-	4.2e-15	55.2	0.0	3.9e-14	52.1	0.0	2.4	2	0	0	2	2	2	1	RNA-metabolising	metallo-beta-lactamase
Lactamase_B_2	PF12706.2	gi|408404164|ref|YP_006862147.1|	-	5.7e-11	42.3	0.0	5.1e-09	35.9	0.0	2.5	2	0	0	2	2	2	1	Beta-lactamase	superfamily	domain
DRMBL	PF07522.9	gi|408404164|ref|YP_006862147.1|	-	0.11	12.5	0.0	0.27	11.2	0.0	1.7	1	0	0	1	1	1	0	DNA	repair	metallo-beta-lactamase
Peptidase_M50	PF02163.17	gi|408404165|ref|YP_006862148.1|	-	1.3e-29	102.5	0.0	3.3e-29	101.2	0.0	1.7	1	1	0	1	1	1	1	Peptidase	family	M50
zf-C2H2_3	PF13878.1	gi|408404167|ref|YP_006862150.1|	-	0.013	15.0	0.2	0.017	14.6	0.1	1.3	1	0	0	1	1	1	0	zinc-finger	of	acetyl-transferase	ESCO
CpXC	PF14353.1	gi|408404167|ref|YP_006862150.1|	-	0.017	15.0	0.3	0.019	14.9	0.2	1.1	1	0	0	1	1	1	0	CpXC	protein
OrfB_Zn_ribbon	PF07282.6	gi|408404167|ref|YP_006862150.1|	-	0.031	13.9	0.4	0.037	13.6	0.3	1.2	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
zf-Mss51	PF13824.1	gi|408404167|ref|YP_006862150.1|	-	0.25	11.2	3.1	0.35	10.7	2.1	1.2	1	0	0	1	1	1	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
DUF1610	PF07754.6	gi|408404167|ref|YP_006862150.1|	-	0.45	10.6	4.7	0.91	9.6	1.4	2.2	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF1610)
DUF1936	PF09151.5	gi|408404167|ref|YP_006862150.1|	-	1.2	8.6	6.4	2.3	7.7	4.5	1.6	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF1936)
ABC_tran	PF00005.22	gi|408404168|ref|YP_006862151.1|	-	1.2e-28	100.1	0.0	1.7e-28	99.5	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|408404168|ref|YP_006862151.1|	-	5.2e-10	39.7	0.0	7.5e-07	29.3	0.0	2.2	1	1	1	2	2	2	2	AAA	domain
AAA_10	PF12846.2	gi|408404168|ref|YP_006862151.1|	-	0.00031	20.2	0.0	0.0028	17.1	0.0	1.9	1	1	1	2	2	2	1	AAA-like	domain
UPF0079	PF02367.12	gi|408404168|ref|YP_006862151.1|	-	0.00045	19.8	0.0	0.00086	18.9	0.0	1.4	1	0	0	1	1	1	1	Uncharacterised	P-loop	hydrolase	UPF0079
SMC_N	PF02463.14	gi|408404168|ref|YP_006862151.1|	-	0.0013	18.0	0.0	0.11	11.7	0.0	2.1	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.1	gi|408404168|ref|YP_006862151.1|	-	0.0014	18.8	0.1	0.005	16.9	0.1	2.0	1	1	0	1	1	1	1	AAA	domain
AAA_29	PF13555.1	gi|408404168|ref|YP_006862151.1|	-	0.0027	17.2	0.4	0.008	15.6	0.0	1.9	2	0	0	2	2	2	1	P-loop	containing	region	of	AAA	domain
AAA	PF00004.24	gi|408404168|ref|YP_006862151.1|	-	0.013	15.6	0.0	0.03	14.5	0.0	1.7	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_30	PF13604.1	gi|408404168|ref|YP_006862151.1|	-	0.019	14.5	0.1	0.047	13.2	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
SbcCD_C	PF13558.1	gi|408404168|ref|YP_006862151.1|	-	0.021	14.7	0.0	0.17	11.8	0.0	2.4	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
AAA_33	PF13671.1	gi|408404168|ref|YP_006862151.1|	-	0.13	12.0	0.1	0.31	10.9	0.1	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_23	PF13476.1	gi|408404168|ref|YP_006862151.1|	-	0.35	11.1	3.8	0.37	11.1	0.2	2.0	1	1	0	2	2	2	0	AAA	domain
ABC2_membrane	PF01061.19	gi|408404169|ref|YP_006862152.1|	-	2.3e-16	59.6	26.0	2.3e-16	59.6	18.0	1.6	1	1	1	2	2	2	1	ABC-2	type	transporter
ABC2_membrane_3	PF12698.2	gi|408404169|ref|YP_006862152.1|	-	2.2e-09	36.8	27.4	2.2e-09	36.8	19.0	1.6	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
Pribosyltran	PF00156.22	gi|408404170|ref|YP_006862153.1|	-	5.7e-05	22.8	0.0	7.2e-05	22.5	0.0	1.1	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
zf-C2H2_4	PF13894.1	gi|408404171|ref|YP_006862154.1|	-	0.00043	20.4	15.3	0.079	13.3	0.5	3.4	3	0	0	3	3	3	3	C2H2-type	zinc	finger
zf-Di19	PF05605.7	gi|408404171|ref|YP_006862154.1|	-	0.0018	18.3	9.4	0.14	12.3	0.2	2.6	2	0	0	2	2	2	2	Drought	induced	19	protein	(Di19),	zinc-binding
DUF629	PF04780.7	gi|408404171|ref|YP_006862154.1|	-	0.37	9.2	5.2	0.51	8.7	1.2	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF629)
DUF2296	PF10058.4	gi|408404171|ref|YP_006862154.1|	-	0.66	9.7	6.2	2.7	7.8	0.3	2.5	2	0	0	2	2	2	0	Predicted	integral	membrane	metal-binding	protein	(DUF2296)
Terminase_GpA	PF05876.7	gi|408404171|ref|YP_006862154.1|	-	1	7.6	5.5	1.6	6.9	3.8	1.2	1	0	0	1	1	1	0	Phage	terminase	large	subunit	(GpA)
Pox_A32	PF04665.7	gi|408404174|ref|YP_006862157.1|	-	0.00086	18.6	0.2	0.0014	17.9	0.1	1.5	1	1	0	1	1	1	1	Poxvirus	A32	protein
AAA_22	PF13401.1	gi|408404174|ref|YP_006862157.1|	-	0.0079	16.3	0.0	0.014	15.5	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_14	PF13173.1	gi|408404174|ref|YP_006862157.1|	-	0.019	14.8	0.1	0.03	14.2	0.1	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_18	PF13238.1	gi|408404174|ref|YP_006862157.1|	-	0.054	13.8	0.0	0.11	12.7	0.0	1.8	1	1	0	1	1	1	0	AAA	domain
AAA_17	PF13207.1	gi|408404174|ref|YP_006862157.1|	-	0.11	13.2	0.0	0.16	12.8	0.0	1.4	1	1	0	1	1	1	0	AAA	domain
AAA_16	PF13191.1	gi|408404174|ref|YP_006862157.1|	-	0.12	12.3	0.0	0.23	11.4	0.0	1.4	1	1	0	1	1	1	0	AAA	ATPase	domain
SWM_repeat	PF13753.1	gi|408404178|ref|YP_006862161.1|	-	0.0019	17.3	0.4	0.0035	16.4	0.3	1.4	1	0	0	1	1	1	1	Putative	flagellar	system-associated	repeat
ATP-synt_J	PF04911.7	gi|408404179|ref|YP_006862162.1|	-	0.015	14.7	0.7	0.029	13.8	0.5	1.6	1	0	0	1	1	1	0	ATP	synthase	j	chain
PHO4	PF01384.15	gi|408404179|ref|YP_006862162.1|	-	0.25	9.9	8.9	0.074	11.6	1.2	1.9	1	1	1	2	2	2	0	Phosphate	transporter	family
Mo-co_dimer	PF03404.11	gi|408404182|ref|YP_006862165.1|	-	0.031	13.9	0.4	0.057	13.0	0.3	1.4	1	0	0	1	1	1	0	Mo-co	oxidoreductase	dimerisation	domain
TraY	PF05509.6	gi|408404183|ref|YP_006862166.1|	-	0.04	13.6	0.1	0.098	12.4	0.0	1.7	2	0	0	2	2	2	0	TraY	domain
DUF2962	PF11176.3	gi|408404183|ref|YP_006862166.1|	-	0.07	12.6	0.1	0.096	12.2	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2962)
CAT_RBD	PF03123.10	gi|408404183|ref|YP_006862166.1|	-	0.19	11.4	0.8	0.97	9.1	0.0	2.3	2	0	0	2	2	2	0	CAT	RNA	binding	domain
HTH_33	PF13592.1	gi|408404184|ref|YP_006862167.1|	-	0.0013	18.1	0.0	0.17	11.4	0.0	2.6	2	0	0	2	2	2	1	Winged	helix-turn	helix
Phage_integrase	PF00589.17	gi|408404184|ref|YP_006862167.1|	-	0.0029	17.2	0.0	0.0054	16.4	0.0	1.5	1	0	0	1	1	1	1	Phage	integrase	family
HTH_32	PF13565.1	gi|408404184|ref|YP_006862167.1|	-	0.0091	16.7	1.7	0.083	13.7	0.0	3.1	3	1	0	3	3	3	1	Homeodomain-like	domain
HTH_29	PF13551.1	gi|408404184|ref|YP_006862167.1|	-	0.024	14.7	0.0	2.9	8.0	0.0	2.6	2	0	0	2	2	2	0	Winged	helix-turn	helix
T4_baseplate	PF12322.3	gi|408404185|ref|YP_006862168.1|	-	0.011	15.0	0.2	0.012	14.8	0.1	1.1	1	0	0	1	1	1	0	T4	bacteriophage	base	plate	protein
DUF4182	PF13790.1	gi|408404185|ref|YP_006862168.1|	-	0.028	14.1	0.0	0.061	13.1	0.0	1.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4182)
zinc_ribbon_2	PF13240.1	gi|408404185|ref|YP_006862168.1|	-	0.045	13.2	0.1	0.073	12.5	0.0	1.3	1	0	0	1	1	1	0	zinc-ribbon	domain
zf-ribbon_3	PF13248.1	gi|408404185|ref|YP_006862168.1|	-	0.054	12.7	0.0	0.081	12.1	0.0	1.3	1	0	0	1	1	1	0	zinc-ribbon	domain
zf-FPG_IleRS	PF06827.9	gi|408404185|ref|YP_006862168.1|	-	0.057	13.0	0.2	0.13	11.8	0.1	1.6	1	0	0	1	1	1	0	Zinc	finger	found	in	FPG	and	IleRS
zf-dskA_traR	PF01258.12	gi|408404185|ref|YP_006862168.1|	-	0.063	13.0	0.2	0.11	12.2	0.1	1.4	1	0	0	1	1	1	0	Prokaryotic	dksA/traR	C4-type	zinc	finger
PTPlike_phytase	PF14566.1	gi|408404185|ref|YP_006862168.1|	-	0.073	13.1	0.3	0.1	12.6	0.2	1.2	1	0	0	1	1	1	0	Inositol	hexakisphosphate
Zn-ribbon_8	PF09723.5	gi|408404185|ref|YP_006862168.1|	-	0.077	12.9	0.1	0.12	12.3	0.0	1.4	1	0	0	1	1	1	0	Zinc	ribbon	domain
DZR	PF12773.2	gi|408404185|ref|YP_006862168.1|	-	0.083	12.7	0.0	0.087	12.6	0.0	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
FYDLN_acid	PF09538.5	gi|408404185|ref|YP_006862168.1|	-	0.098	13.2	0.2	0.13	12.8	0.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(FYDLN_acid)
DUF2324	PF10086.4	gi|408404188|ref|YP_006862171.1|	-	0.0072	15.5	0.2	0.0073	15.5	0.1	1.1	1	0	0	1	1	1	1	Putative	membrane	peptidase	family	(DUF2324)
Virul_fac_BrkB	PF03631.10	gi|408404188|ref|YP_006862171.1|	-	0.022	14.1	1.0	0.025	13.9	0.7	1.0	1	0	0	1	1	1	0	Virulence	factor	BrkB
DUF1469	PF07332.6	gi|408404188|ref|YP_006862171.1|	-	0.024	14.3	0.2	0.034	13.8	0.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1469)
DUF3270	PF11674.3	gi|408404188|ref|YP_006862171.1|	-	0.04	13.9	2.9	0.061	13.3	2.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3270)
DUF2207	PF09972.4	gi|408404188|ref|YP_006862171.1|	-	0.45	9.0	2.0	0.48	8.9	1.4	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
PurS	PF02700.9	gi|408404189|ref|YP_006862172.1|	-	1.8e-18	66.2	0.4	2e-18	66.1	0.3	1.0	1	0	0	1	1	1	1	Phosphoribosylformylglycinamidine	(FGAM)	synthase
DUF2179	PF10035.4	gi|408404189|ref|YP_006862172.1|	-	0.026	14.1	0.4	0.041	13.4	0.1	1.5	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2179)
Diphthamide_syn	PF01866.12	gi|408404189|ref|YP_006862172.1|	-	0.072	12.3	0.0	0.078	12.2	0.0	1.0	1	0	0	1	1	1	0	Putative	diphthamide	synthesis	protein
PLDc_2	PF13091.1	gi|408404190|ref|YP_006862173.1|	-	0.015	15.0	0.5	0.08	12.6	0.3	1.9	1	1	0	1	1	1	0	PLD-like	domain
DUF1724	PF08350.5	gi|408404190|ref|YP_006862173.1|	-	0.039	13.4	0.2	0.066	12.7	0.1	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1724)
CarboxypepD_reg	PF13620.1	gi|408404192|ref|YP_006862175.1|	-	1.7e-07	31.1	0.3	3.2e-07	30.3	0.2	1.4	1	0	0	1	1	1	1	Carboxypeptidase	regulatory-like	domain
DUF4480	PF13715.1	gi|408404192|ref|YP_006862175.1|	-	0.099	12.7	0.0	0.15	12.1	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4480)
CBS	PF00571.23	gi|408404194|ref|YP_006862177.1|	-	4.9e-30	103.0	0.8	1.7e-15	56.4	0.3	2.1	2	0	0	2	2	2	2	CBS	domain
GATase_5	PF13507.1	gi|408404195|ref|YP_006862178.1|	-	9.5e-45	152.5	0.0	1.4e-44	151.9	0.0	1.2	1	0	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
GATase_3	PF07685.9	gi|408404195|ref|YP_006862178.1|	-	9.9e-09	34.9	0.0	4.5e-08	32.8	0.0	2.0	2	0	0	2	2	2	1	CobB/CobQ-like	glutamine	amidotransferase	domain
GATase	PF00117.23	gi|408404195|ref|YP_006862178.1|	-	3.8e-08	32.9	0.0	8.9e-08	31.8	0.0	1.6	1	1	0	1	1	1	1	Glutamine	amidotransferase	class-I
DJ-1_PfpI	PF01965.19	gi|408404195|ref|YP_006862178.1|	-	6.6e-08	32.1	0.0	2e-07	30.5	0.0	1.8	2	1	0	2	2	2	1	DJ-1/PfpI	family
DUF4066	PF13278.1	gi|408404195|ref|YP_006862178.1|	-	6.4e-05	22.2	0.0	0.00018	20.8	0.0	1.6	2	0	0	2	2	2	1	Putative	amidotransferase
Peptidase_C26	PF07722.8	gi|408404195|ref|YP_006862178.1|	-	0.0023	17.3	0.1	0.004	16.6	0.0	1.6	1	1	0	1	1	1	1	Peptidase	C26
SNO	PF01174.14	gi|408404195|ref|YP_006862178.1|	-	0.0053	16.4	0.0	0.015	14.9	0.0	1.7	1	1	0	1	1	1	1	SNO	glutamine	amidotransferase	family
DUF807	PF05660.6	gi|408404195|ref|YP_006862178.1|	-	0.094	12.3	0.0	0.14	11.7	0.0	1.2	1	0	0	1	1	1	0	Coxiella	burnetii	protein	of	unknown	function	(DUF807)
AIRS_C	PF02769.17	gi|408404196|ref|YP_006862179.1|	-	3.7e-45	153.6	0.2	4.4e-22	78.7	0.0	2.2	2	0	0	2	2	2	2	AIR	synthase	related	protein,	C-terminal	domain
AIRS	PF00586.19	gi|408404196|ref|YP_006862179.1|	-	2.4e-38	130.2	2.4	6.2e-23	80.8	0.3	2.6	2	0	0	2	2	2	2	AIR	synthase	related	protein,	N-terminal	domain
MAP	PF03642.8	gi|408404196|ref|YP_006862179.1|	-	0.13	12.5	0.1	0.49	10.6	0.0	1.9	2	0	0	2	2	2	0	MAP	domain
GATase_2	PF00310.16	gi|408404197|ref|YP_006862180.1|	-	4.9e-22	78.1	0.1	4.5e-11	42.0	0.0	3.1	3	0	0	3	3	3	3	Glutamine	amidotransferases	class-II
GATase_6	PF13522.1	gi|408404197|ref|YP_006862180.1|	-	9.6e-16	57.9	0.0	1.6e-15	57.2	0.0	1.3	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
GATase_7	PF13537.1	gi|408404197|ref|YP_006862180.1|	-	6.4e-14	51.7	0.0	1e-13	51.0	0.0	1.3	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
Pribosyltran	PF00156.22	gi|408404197|ref|YP_006862180.1|	-	3.1e-11	43.0	0.1	5.9e-11	42.1	0.1	1.4	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
GATase_4	PF13230.1	gi|408404197|ref|YP_006862180.1|	-	8.5e-07	27.9	0.0	2.5e-06	26.4	0.0	1.7	2	0	0	2	2	2	1	Glutamine	amidotransferases	class-II
Auto_anti-p27	PF06677.7	gi|408404198|ref|YP_006862181.1|	-	0.028	14.1	0.7	0.059	13.1	0.1	1.8	2	0	0	2	2	2	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
RNA_pol_N	PF01194.12	gi|408404198|ref|YP_006862181.1|	-	0.08	12.9	0.0	0.17	11.9	0.0	1.6	1	0	0	1	1	1	0	RNA	polymerases	N	/	8	kDa	subunit
zf-FCS	PF06467.9	gi|408404198|ref|YP_006862181.1|	-	0.14	11.7	3.0	2.4	7.8	0.5	2.5	2	0	0	2	2	2	0	MYM-type	Zinc	finger	with	FCS	sequence	motif
CoA_binding_2	PF13380.1	gi|408404200|ref|YP_006862183.1|	-	6e-41	139.2	0.3	6.9e-41	139.0	0.2	1.0	1	0	0	1	1	1	1	CoA	binding	domain
CoA_binding	PF02629.14	gi|408404200|ref|YP_006862183.1|	-	2.5e-10	40.7	0.1	4.3e-10	39.9	0.1	1.3	1	0	0	1	1	1	1	CoA	binding	domain
TroA	PF01297.12	gi|408404200|ref|YP_006862183.1|	-	0.00014	21.2	0.0	0.00029	20.1	0.0	1.5	2	0	0	2	2	2	1	Periplasmic	solute	binding	protein	family
SpoU_sub_bind	PF08032.7	gi|408404200|ref|YP_006862183.1|	-	0.03	14.4	0.2	0.13	12.4	0.1	1.9	2	0	0	2	2	2	0	RNA	2'-O	ribose	methyltransferase	substrate	binding
Bestrophin	PF01062.16	gi|408404201|ref|YP_006862184.1|	-	0.12	11.3	0.0	0.12	11.3	0.0	1.1	1	0	0	1	1	1	0	Bestrophin,	RFP-TM,	chloride	channel
Zn_Tnp_IS1	PF03811.8	gi|408404202|ref|YP_006862185.1|	-	0.074	12.5	0.0	0.14	11.6	0.0	1.5	1	0	0	1	1	1	0	InsA	N-terminal	domain
DUF2387	PF09526.5	gi|408404202|ref|YP_006862185.1|	-	0.89	9.5	4.4	0.43	10.5	0.5	2.4	2	0	0	2	2	2	0	Probable	metal-binding	protein	(DUF2387)
Mt_ATP-synt_D	PF05873.7	gi|408404202|ref|YP_006862185.1|	-	1.9	8.0	16.0	0.26	10.8	3.3	2.6	1	1	1	2	2	2	0	ATP	synthase	D	chain,	mitochondrial	(ATP5H)
Colicin-DNase	PF12639.2	gi|408404202|ref|YP_006862185.1|	-	3.5	7.9	7.9	2.4	8.4	1.1	2.7	1	1	1	2	2	2	0	DNase/tRNase	domain	of	colicin-like	bacteriocin
Baculo_PEP_C	PF04513.7	gi|408404202|ref|YP_006862185.1|	-	4.9	6.9	7.8	2.3	8.0	3.3	2.2	2	1	0	2	2	2	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
Cauli_AT	PF03233.8	gi|408404202|ref|YP_006862185.1|	-	6	6.5	11.9	0.16	11.6	1.9	2.4	1	1	1	2	2	2	0	Aphid	transmission	protein
MMR_HSR1_C	PF08438.5	gi|408404203|ref|YP_006862186.1|	-	1.4e-34	118.5	0.1	2.7e-34	117.6	0.0	1.5	1	0	0	1	1	1	1	GTPase	of	unknown	function	C-terminal
MMR_HSR1	PF01926.18	gi|408404203|ref|YP_006862186.1|	-	7.4e-17	61.3	0.0	2.4e-16	59.7	0.0	2.1	2	1	1	3	3	3	1	50S	ribosome-binding	GTPase
TGS	PF02824.16	gi|408404203|ref|YP_006862186.1|	-	2.4e-10	40.0	0.0	4.6e-10	39.1	0.0	1.4	1	0	0	1	1	1	1	TGS	domain
FeoB_N	PF02421.13	gi|408404203|ref|YP_006862186.1|	-	4.6e-08	32.5	0.1	1.1e-05	24.7	0.1	3.2	4	0	0	4	4	4	1	Ferrous	iron	transport	protein	B
Dynamin_N	PF00350.18	gi|408404203|ref|YP_006862186.1|	-	0.00016	21.5	0.1	0.065	13.0	0.0	2.4	1	1	1	2	2	2	2	Dynamin	family
GTP_EFTU	PF00009.22	gi|408404203|ref|YP_006862186.1|	-	0.0088	15.4	0.5	4	6.8	0.1	2.7	2	1	0	2	2	2	2	Elongation	factor	Tu	GTP	binding	domain
Choline_kin_N	PF04428.9	gi|408404204|ref|YP_006862187.1|	-	0.16	11.4	0.9	5.2	6.6	0.0	2.2	1	1	1	2	2	2	0	Choline	kinase	N	terminus
HTH_45	PF14947.1	gi|408404205|ref|YP_006862188.1|	-	1.6e-14	53.4	1.0	1.8e-14	53.2	0.7	1.0	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_27	PF13463.1	gi|408404205|ref|YP_006862188.1|	-	0.00034	20.8	0.6	0.00043	20.5	0.4	1.1	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_24	PF13412.1	gi|408404205|ref|YP_006862188.1|	-	0.00038	19.7	0.3	0.00056	19.2	0.2	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
DUF387	PF04079.11	gi|408404205|ref|YP_006862188.1|	-	0.003	16.9	0.1	0.0031	16.8	0.1	1.1	1	0	0	1	1	1	1	Putative	transcriptional	regulators	(Ypuh-like)
PadR	PF03551.9	gi|408404205|ref|YP_006862188.1|	-	0.0078	15.9	0.4	0.0099	15.6	0.3	1.2	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
Rio2_N	PF09202.6	gi|408404205|ref|YP_006862188.1|	-	0.0099	15.9	0.2	0.012	15.6	0.2	1.1	1	0	0	1	1	1	1	Rio2,	N-terminal
RNA_pol_Rpc34	PF05158.7	gi|408404205|ref|YP_006862188.1|	-	0.011	14.9	0.1	0.011	14.8	0.0	1.1	1	0	0	1	1	1	0	RNA	polymerase	Rpc34	subunit
DUF4364	PF14277.1	gi|408404205|ref|YP_006862188.1|	-	0.019	14.5	0.1	0.02	14.5	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
HTH_34	PF13601.1	gi|408404205|ref|YP_006862188.1|	-	0.026	14.5	0.3	0.03	14.3	0.2	1.1	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
DUF3169	PF11368.3	gi|408404205|ref|YP_006862188.1|	-	0.028	13.6	0.0	0.028	13.6	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3169)
CARD	PF00619.16	gi|408404205|ref|YP_006862188.1|	-	0.033	14.0	0.1	0.045	13.5	0.1	1.2	1	0	0	1	1	1	0	Caspase	recruitment	domain
BPL_LplA_LipB	PF03099.14	gi|408404206|ref|YP_006862189.1|	-	1.8e-23	82.9	0.2	1.3e-22	80.1	0.0	2.0	2	0	0	2	2	2	1	Biotin/lipoate	A/B	protein	ligase	family
HTH_11	PF08279.7	gi|408404206|ref|YP_006862189.1|	-	2.9e-14	52.4	0.1	6.5e-14	51.3	0.1	1.6	1	0	0	1	1	1	1	HTH	domain
BPL_C	PF02237.12	gi|408404206|ref|YP_006862189.1|	-	5.9e-09	35.4	1.5	7.5e-09	35.1	0.3	1.8	2	0	0	2	2	2	1	Biotin	protein	ligase	C	terminal	domain
HTH_24	PF13412.1	gi|408404206|ref|YP_006862189.1|	-	4e-06	26.1	0.1	1.7e-05	24.1	0.0	2.0	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
Rrf2	PF02082.15	gi|408404206|ref|YP_006862189.1|	-	0.0056	16.7	0.0	0.015	15.3	0.0	1.7	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_AsnC-type	PF13404.1	gi|408404206|ref|YP_006862189.1|	-	0.016	14.7	0.1	0.051	13.1	0.0	1.9	2	0	0	2	2	2	0	AsnC-type	helix-turn-helix	domain
HTH_10	PF04967.7	gi|408404206|ref|YP_006862189.1|	-	0.037	13.6	0.1	0.13	11.8	0.0	1.9	2	0	0	2	2	2	0	HTH	DNA	binding	domain
HTH_1	PF00126.22	gi|408404206|ref|YP_006862189.1|	-	0.048	13.4	0.0	0.11	12.2	0.0	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
DUF4147	PF13660.1	gi|408404207|ref|YP_006862190.1|	-	9.7e-83	276.9	2.3	1.3e-82	276.5	1.6	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4147)
MOFRL	PF05161.8	gi|408404207|ref|YP_006862190.1|	-	7.8e-33	112.8	0.2	2.2e-32	111.3	0.2	1.8	1	0	0	1	1	1	1	MOFRL	family
TF_Zn_Ribbon	PF08271.7	gi|408404208|ref|YP_006862191.1|	-	0.012	14.9	6.4	0.022	14.0	4.4	1.4	1	0	0	1	1	1	0	TFIIB	zinc-binding
HypA	PF01155.14	gi|408404208|ref|YP_006862191.1|	-	0.16	11.6	4.1	0.18	11.4	2.9	1.2	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
zf-C4_Topoisom	PF01396.14	gi|408404208|ref|YP_006862191.1|	-	1.1	8.7	5.1	2.3	7.7	3.6	1.6	1	1	0	1	1	1	0	Topoisomerase	DNA	binding	C4	zinc	finger
PhnA_Zn_Ribbon	PF08274.7	gi|408404208|ref|YP_006862191.1|	-	1.4	8.7	6.8	2.8	7.8	4.7	1.6	1	0	0	1	1	1	0	PhnA	Zinc-Ribbon
C1_3	PF07649.7	gi|408404208|ref|YP_006862191.1|	-	1.7	8.7	11.0	0.17	11.9	4.4	1.8	1	1	0	1	1	1	0	C1-like	domain
zf-TFIIB	PF13453.1	gi|408404208|ref|YP_006862191.1|	-	4.7	6.4	6.6	6.2	6.0	3.4	2.1	2	1	0	2	2	2	0	Transcription	factor	zinc-finger
Osmo_MPGsynth	PF09488.5	gi|408404210|ref|YP_006862193.1|	-	8.6e-156	518.3	0.1	9.8e-156	518.2	0.0	1.0	1	0	0	1	1	1	1	Mannosyl-3-phosphoglycerate	synthase	(osmo_MPGsynth)
Glycos_transf_2	PF00535.21	gi|408404210|ref|YP_006862193.1|	-	0.0033	17.1	0.2	0.089	12.4	0.1	2.3	1	1	0	1	1	1	1	Glycosyl	transferase	family	2
GDE_C	PF06202.9	gi|408404211|ref|YP_006862194.1|	-	3.6e-39	134.5	0.1	7.7e-39	133.4	0.1	1.5	1	0	0	1	1	1	1	Amylo-alpha-1,6-glucosidase
DUF608	PF04685.8	gi|408404211|ref|YP_006862194.1|	-	1e-11	44.1	0.1	2e-11	43.2	0.1	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF608
Bac_rhamnosid	PF05592.6	gi|408404211|ref|YP_006862194.1|	-	3.9e-09	35.2	0.0	6e-09	34.6	0.0	1.2	1	0	0	1	1	1	1	Bacterial	alpha-L-rhamnosidase
Glyco_hydro_100	PF12899.2	gi|408404211|ref|YP_006862194.1|	-	3.4e-08	32.3	0.1	0.0017	16.8	0.1	2.2	2	0	0	2	2	2	2	Alkaline	and	neutral	invertase
Trehalase	PF01204.13	gi|408404211|ref|YP_006862194.1|	-	3.6e-08	32.5	0.8	5.7e-08	31.8	0.1	1.5	2	0	0	2	2	2	1	Trehalase
DUF2203	PF09969.4	gi|408404212|ref|YP_006862195.1|	-	8.9e-36	122.7	0.4	1e-35	122.5	0.3	1.0	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2203)
HsdM_N	PF12161.3	gi|408404212|ref|YP_006862195.1|	-	0.028	14.8	0.1	0.039	14.3	0.1	1.3	1	0	0	1	1	1	0	HsdM	N-terminal	domain
DUF964	PF06133.6	gi|408404212|ref|YP_006862195.1|	-	0.039	13.9	2.6	0.051	13.5	1.8	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF964)
Sigma70_r4_2	PF08281.7	gi|408404213|ref|YP_006862196.1|	-	0.00027	20.3	0.0	0.00043	19.6	0.0	1.3	1	0	0	1	1	1	1	Sigma-70,	region	4
RPA_C	PF08784.6	gi|408404213|ref|YP_006862196.1|	-	0.00084	19.7	0.0	0.0011	19.3	0.0	1.1	1	0	0	1	1	1	1	Replication	protein	A	C	terminal
TrmB	PF01978.14	gi|408404213|ref|YP_006862196.1|	-	0.0055	16.3	0.0	0.0078	15.8	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
CPSase_L_D3	PF02787.14	gi|408404213|ref|YP_006862196.1|	-	0.0055	16.4	0.0	0.0074	16.0	0.0	1.3	1	0	0	1	1	1	1	Carbamoyl-phosphate	synthetase	large	chain,	oligomerisation	domain
GerE	PF00196.14	gi|408404213|ref|YP_006862196.1|	-	0.0063	15.8	0.1	0.012	14.9	0.0	1.4	1	1	0	1	1	1	1	Bacterial	regulatory	proteins,	luxR	family
HTH_Crp_2	PF13545.1	gi|408404213|ref|YP_006862196.1|	-	0.0086	15.8	0.0	0.012	15.3	0.0	1.3	1	1	0	1	1	1	1	Crp-like	helix-turn-helix	domain
Rrf2	PF02082.15	gi|408404213|ref|YP_006862196.1|	-	0.0087	16.1	0.0	0.0099	15.9	0.0	1.1	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_11	PF08279.7	gi|408404213|ref|YP_006862196.1|	-	0.019	14.6	0.0	0.028	14.0	0.0	1.4	1	0	0	1	1	1	0	HTH	domain
HTH_24	PF13412.1	gi|408404213|ref|YP_006862196.1|	-	0.026	13.9	0.0	0.044	13.1	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_37	PF13744.1	gi|408404213|ref|YP_006862196.1|	-	0.026	14.3	0.0	0.033	13.9	0.0	1.4	1	1	0	1	1	1	0	Helix-turn-helix	domain
Cas_APE2256	PF09651.5	gi|408404213|ref|YP_006862196.1|	-	0.051	13.2	0.0	0.055	13.1	0.0	1.0	1	0	0	1	1	1	0	CRISPR-associated	protein	(Cas_APE2256)
HTH_6	PF01418.12	gi|408404213|ref|YP_006862196.1|	-	0.097	12.4	0.1	0.12	12.0	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain,	rpiR	family
HTH_23	PF13384.1	gi|408404213|ref|YP_006862196.1|	-	0.11	12.1	0.0	0.21	11.2	0.0	1.4	1	0	0	1	1	1	0	Homeodomain-like	domain
UbiA	PF01040.13	gi|408404214|ref|YP_006862197.1|	-	3e-29	102.0	25.4	3.9e-29	101.6	17.6	1.1	1	0	0	1	1	1	1	UbiA	prenyltransferase	family
DUF3989	PF13150.1	gi|408404214|ref|YP_006862197.1|	-	6.1	6.3	6.0	1.2	8.6	1.2	2.0	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3989)
HTH_45	PF14947.1	gi|408404215|ref|YP_006862198.1|	-	1.4e-08	34.4	0.0	1.7e-08	34.1	0.0	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF2513	PF10711.4	gi|408404215|ref|YP_006862198.1|	-	0.00058	19.9	0.1	0.0011	18.9	0.0	1.5	1	1	0	1	1	1	1	Hypothetical	protein	(DUF2513)
Rio2_N	PF09202.6	gi|408404215|ref|YP_006862198.1|	-	0.0015	18.5	0.1	0.0017	18.3	0.0	1.2	1	0	0	1	1	1	1	Rio2,	N-terminal
Aldo_ket_red	PF00248.16	gi|408404217|ref|YP_006862200.1|	-	1.9e-29	102.3	1.2	2.4e-27	95.5	0.8	2.8	1	1	0	1	1	1	1	Aldo/keto	reductase	family
ABM	PF03992.11	gi|408404218|ref|YP_006862201.1|	-	1.3e-15	57.1	0.0	1.6e-15	56.8	0.0	1.1	1	0	0	1	1	1	1	Antibiotic	biosynthesis	monooxygenase
COX5A	PF02284.11	gi|408404218|ref|YP_006862201.1|	-	0.069	13.1	0.0	0.15	12.0	0.0	1.5	2	0	0	2	2	2	0	Cytochrome	c	oxidase	subunit	Va
TPR_11	PF13414.1	gi|408404219|ref|YP_006862202.1|	-	3.4e-20	71.4	6.4	1.5e-10	40.5	1.4	2.6	1	1	2	3	3	3	3	TPR	repeat
TPR_1	PF00515.23	gi|408404219|ref|YP_006862202.1|	-	6.3e-13	47.7	14.1	3e-06	26.5	2.3	4.8	4	1	0	4	4	4	2	Tetratricopeptide	repeat
TPR_2	PF07719.12	gi|408404219|ref|YP_006862202.1|	-	6.6e-13	47.5	10.2	0.00035	20.2	1.2	4.5	4	0	0	4	4	4	3	Tetratricopeptide	repeat
TPR_12	PF13424.1	gi|408404219|ref|YP_006862202.1|	-	2.5e-12	46.5	8.9	3.3e-07	30.1	0.5	2.7	1	1	2	3	3	3	3	Tetratricopeptide	repeat
TPR_16	PF13432.1	gi|408404219|ref|YP_006862202.1|	-	1.1e-10	41.8	6.3	5.5e-08	33.2	0.1	2.8	2	1	1	3	3	3	2	Tetratricopeptide	repeat
TPR_17	PF13431.1	gi|408404219|ref|YP_006862202.1|	-	1.8e-08	33.8	7.3	1.8e-05	24.5	1.2	3.7	3	0	0	3	3	3	2	Tetratricopeptide	repeat
TPR_9	PF13371.1	gi|408404219|ref|YP_006862202.1|	-	3.1e-08	33.3	0.2	2.4e-06	27.3	0.0	3.0	2	1	1	3	3	3	1	Tetratricopeptide	repeat
TPR_14	PF13428.1	gi|408404219|ref|YP_006862202.1|	-	2.8e-07	30.5	3.2	0.09	13.4	0.1	4.2	2	1	2	4	4	4	3	Tetratricopeptide	repeat
TPR_8	PF13181.1	gi|408404219|ref|YP_006862202.1|	-	1.9e-06	27.2	9.3	8.3e-05	22.1	1.3	4.0	4	1	1	5	5	5	2	Tetratricopeptide	repeat
TPR_19	PF14559.1	gi|408404219|ref|YP_006862202.1|	-	4.8e-06	26.8	7.6	0.00046	20.4	0.1	3.2	2	1	1	3	3	3	2	Tetratricopeptide	repeat
TPR_7	PF13176.1	gi|408404219|ref|YP_006862202.1|	-	0.00014	21.4	4.5	0.55	10.1	0.0	4.3	4	0	0	4	4	4	1	Tetratricopeptide	repeat
Peptidase_C39_2	PF13529.1	gi|408404219|ref|YP_006862202.1|	-	0.00043	20.6	0.1	0.0039	17.5	0.0	2.3	1	1	0	1	1	1	1	Peptidase_C39	like	family
DUF2974	PF11187.3	gi|408404219|ref|YP_006862202.1|	-	0.039	13.3	0.1	3.8	6.8	0.0	2.3	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2974)
Sel1	PF08238.7	gi|408404219|ref|YP_006862202.1|	-	0.097	13.3	6.2	3.6	8.3	2.6	2.7	2	0	0	2	2	2	0	Sel1	repeat
TPR_6	PF13174.1	gi|408404219|ref|YP_006862202.1|	-	0.14	12.7	7.6	1.5	9.4	0.0	3.8	4	0	0	4	4	4	0	Tetratricopeptide	repeat
MIT	PF04212.13	gi|408404219|ref|YP_006862202.1|	-	2.6	8.0	7.0	1.6	8.7	0.1	3.1	3	0	0	3	3	3	0	MIT	(microtubule	interacting	and	transport)	domain
GATase	PF00117.23	gi|408404220|ref|YP_006862203.1|	-	4.4e-26	91.5	0.0	4.9e-26	91.3	0.0	1.0	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.8	gi|408404220|ref|YP_006862203.1|	-	2.5e-09	36.8	0.0	1.1e-08	34.7	0.0	2.1	1	1	0	1	1	1	1	Peptidase	C26
SNO	PF01174.14	gi|408404220|ref|YP_006862203.1|	-	0.01	15.5	0.0	0.96	9.0	0.0	2.1	2	0	0	2	2	2	2	SNO	glutamine	amidotransferase	family
GATase_3	PF07685.9	gi|408404220|ref|YP_006862203.1|	-	0.071	12.7	0.5	0.61	9.6	0.3	2.0	1	1	0	1	1	1	0	CobB/CobQ-like	glutamine	amidotransferase	domain
UPF0182	PF03699.8	gi|408404221|ref|YP_006862204.1|	-	3.5e-35	121.1	22.6	1.4e-33	115.9	15.6	2.9	1	1	0	1	1	1	1	Uncharacterised	protein	family	(UPF0182)
DNA_primase_S	PF01896.14	gi|408404223|ref|YP_006862206.1|	-	8.9e-14	51.5	0.0	1.9e-13	50.4	0.0	1.5	1	0	0	1	1	1	1	Eukaryotic	and	archaeal	DNA	primase	small	subunit
DUF2296	PF10058.4	gi|408404223|ref|YP_006862206.1|	-	0.018	14.7	1.5	0.061	13.0	1.1	1.9	1	0	0	1	1	1	0	Predicted	integral	membrane	metal-binding	protein	(DUF2296)
Gmx_para_CXXCG	PF09535.5	gi|408404223|ref|YP_006862206.1|	-	0.13	11.2	2.7	0.095	11.6	0.8	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(Gmx_para_CXXCG)
OrfB_Zn_ribbon	PF07282.6	gi|408404223|ref|YP_006862206.1|	-	0.62	9.7	5.0	0.32	10.7	1.6	1.9	1	1	1	2	2	2	0	Putative	transposase	DNA-binding	domain
DZR	PF12773.2	gi|408404223|ref|YP_006862206.1|	-	2.8	7.8	9.8	1.6	8.5	4.7	2.1	2	0	0	2	2	2	0	Double	zinc	ribbon
zf-ribbon_3	PF13248.1	gi|408404223|ref|YP_006862206.1|	-	9.1	5.6	9.7	8.4	5.7	0.1	2.9	3	0	0	3	3	3	0	zinc-ribbon	domain
DNA_primase_lrg	PF04104.9	gi|408404224|ref|YP_006862207.1|	-	8.1e-30	103.9	0.2	8.1e-30	103.9	0.2	2.1	2	0	0	2	2	2	1	Eukaryotic	and	archaeal	DNA	primase,	large	subunit
HTH_40	PF14493.1	gi|408404224|ref|YP_006862207.1|	-	0.062	13.5	0.3	0.21	11.8	0.0	1.9	2	0	0	2	2	2	0	Helix-turn-helix	domain
RNA_pol_Rpb4	PF03874.11	gi|408404224|ref|YP_006862207.1|	-	0.51	10.3	3.7	0.41	10.6	1.0	2.0	2	0	0	2	2	2	0	RNA	polymerase	Rpb4
AP_endonuc_2	PF01261.19	gi|408404225|ref|YP_006862208.1|	-	8.6e-28	97.0	0.0	1e-27	96.8	0.0	1.1	1	0	0	1	1	1	1	Xylose	isomerase-like	TIM	barrel
NAF	PF03822.9	gi|408404226|ref|YP_006862209.1|	-	0.067	12.9	0.0	0.11	12.2	0.0	1.3	1	0	0	1	1	1	0	NAF	domain
DeoC	PF01791.4	gi|408404228|ref|YP_006862211.1|	-	1e-49	169.0	0.0	1.2e-49	168.7	0.0	1.0	1	0	0	1	1	1	1	DeoC/LacD	family	aldolase
PEP_mutase	PF13714.1	gi|408404228|ref|YP_006862211.1|	-	0.0064	15.7	0.2	0.044	13.0	0.2	2.2	1	1	0	1	1	1	1	Phosphoenolpyruvate	phosphomutase
OMPdecase	PF00215.19	gi|408404228|ref|YP_006862211.1|	-	0.0082	15.5	0.1	0.012	15.0	0.1	1.2	1	0	0	1	1	1	1	Orotidine	5'-phosphate	decarboxylase	/	HUMPS	family
ThiG	PF05690.9	gi|408404228|ref|YP_006862211.1|	-	0.41	9.6	2.6	0.75	8.8	0.4	2.3	2	1	0	2	2	2	0	Thiazole	biosynthesis	protein	ThiG
DHQS	PF01959.11	gi|408404229|ref|YP_006862212.1|	-	8.6e-113	376.6	1.2	1e-112	376.3	0.8	1.0	1	0	0	1	1	1	1	3-dehydroquinate	synthase	(EC	4.6.1.3)
FAIM1	PF06905.8	gi|408404229|ref|YP_006862212.1|	-	0.051	12.7	0.0	0.098	11.8	0.0	1.5	1	0	0	1	1	1	0	Fas	apoptotic	inhibitory	molecule	(FAIM1)
Helicase_RecD	PF05127.9	gi|408404229|ref|YP_006862212.1|	-	0.072	12.7	0.0	0.13	11.8	0.0	1.3	1	0	0	1	1	1	0	Helicase
N6_N4_Mtase	PF01555.13	gi|408404230|ref|YP_006862213.1|	-	6.2e-35	120.7	0.0	7.5e-35	120.4	0.0	1.1	1	0	0	1	1	1	1	DNA	methylase
Methyltransf_26	PF13659.1	gi|408404230|ref|YP_006862213.1|	-	8.4e-10	38.7	0.0	0.00031	20.7	0.0	2.2	2	0	0	2	2	2	2	Methyltransferase	domain
Methyltransf_11	PF08241.7	gi|408404230|ref|YP_006862213.1|	-	0.00061	20.2	0.0	0.27	11.7	0.0	2.4	2	0	0	2	2	2	2	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|408404230|ref|YP_006862213.1|	-	0.00071	19.1	0.0	0.013	15.1	0.0	2.1	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|408404230|ref|YP_006862213.1|	-	0.059	13.7	0.0	0.11	12.9	0.0	1.4	1	0	0	1	1	1	0	Methyltransferase	domain
UPF0020	PF01170.13	gi|408404230|ref|YP_006862213.1|	-	0.12	11.9	0.0	1.4	8.5	0.0	2.3	2	0	0	2	2	2	0	Putative	RNA	methylase	family	UPF0020
Pyridox_oxidase	PF01243.15	gi|408404231|ref|YP_006862214.1|	-	0.14	12.1	0.0	0.14	12.1	0.0	1.1	1	0	0	1	1	1	0	Pyridoxamine	5'-phosphate	oxidase
DUF2854	PF11016.3	gi|408404234|ref|YP_006862217.1|	-	0.076	12.5	0.1	0.097	12.2	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2854)
Transp_Tc5_C	PF04236.10	gi|408404234|ref|YP_006862217.1|	-	0.11	12.7	0.2	0.16	12.1	0.1	1.3	1	0	0	1	1	1	0	Tc5	transposase	C-terminal	domain
DHquinase_I	PF01487.10	gi|408404235|ref|YP_006862218.1|	-	1.3e-49	168.8	0.0	1.4e-49	168.7	0.0	1.0	1	0	0	1	1	1	1	Type	I	3-dehydroquinase
HyaE	PF07449.6	gi|408404235|ref|YP_006862218.1|	-	0.08	12.8	0.0	0.12	12.3	0.0	1.3	1	0	0	1	1	1	0	Hydrogenase-1	expression	protein	HyaE
Shikimate_dh_N	PF08501.6	gi|408404236|ref|YP_006862219.1|	-	1.1e-30	105.5	0.1	2.1e-30	104.5	0.0	1.5	1	0	0	1	1	1	1	Shikimate	dehydrogenase	substrate	binding	domain
Shikimate_DH	PF01488.15	gi|408404236|ref|YP_006862219.1|	-	1.3e-16	60.9	0.1	2e-16	60.2	0.1	1.3	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
Saccharop_dh	PF03435.13	gi|408404236|ref|YP_006862219.1|	-	1.4e-06	27.5	0.5	2.3e-06	26.8	0.4	1.3	1	0	0	1	1	1	1	Saccharopine	dehydrogenase
OCD_Mu_crystall	PF02423.10	gi|408404236|ref|YP_006862219.1|	-	2.3e-06	26.6	0.3	3.3e-06	26.1	0.2	1.1	1	0	0	1	1	1	1	Ornithine	cyclodeaminase/mu-crystallin	family
GARS_N	PF02844.10	gi|408404236|ref|YP_006862219.1|	-	0.0069	16.8	0.1	0.015	15.7	0.1	1.6	1	0	0	1	1	1	1	Phosphoribosylglycinamide	synthetase,	N	domain
GHMP_kinases_N	PF00288.21	gi|408404237|ref|YP_006862220.1|	-	3.3e-12	46.2	0.5	1e-11	44.6	0.3	1.9	1	0	0	1	1	1	1	GHMP	kinases	N	terminal	domain
GHMP_kinases_C	PF08544.8	gi|408404237|ref|YP_006862220.1|	-	4.1e-05	23.6	0.3	0.00014	21.9	0.1	1.9	2	0	0	2	2	2	1	GHMP	kinases	C	terminal
EPSP_synthase	PF00275.15	gi|408404238|ref|YP_006862221.1|	-	7.2e-109	363.9	2.3	8.9e-109	363.6	1.6	1.0	1	0	0	1	1	1	1	EPSP	synthase	(3-phosphoshikimate	1-carboxyvinyltransferase)
Chorismate_synt	PF01264.16	gi|408404239|ref|YP_006862222.1|	-	1.6e-136	454.4	0.0	1.8e-136	454.2	0.0	1.0	1	0	0	1	1	1	1	Chorismate	synthase
Aminotran_1_2	PF00155.16	gi|408404240|ref|YP_006862223.1|	-	1.2e-54	185.6	0.0	1.6e-54	185.2	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Cys_Met_Meta_PP	PF01053.15	gi|408404240|ref|YP_006862223.1|	-	2.6e-10	39.1	0.0	4.2e-10	38.4	0.0	1.3	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Aminotran_5	PF00266.14	gi|408404240|ref|YP_006862223.1|	-	6.6e-09	34.9	0.0	1.1e-08	34.3	0.0	1.2	1	0	0	1	1	1	1	Aminotransferase	class-V
Beta_elim_lyase	PF01212.16	gi|408404240|ref|YP_006862223.1|	-	2.1e-07	30.3	0.0	4.3e-07	29.3	0.0	1.4	1	0	0	1	1	1	1	Beta-eliminating	lyase
CM_2	PF01817.16	gi|408404240|ref|YP_006862223.1|	-	1.1e-06	28.6	2.2	2.2e-06	27.6	1.5	1.6	1	0	0	1	1	1	1	Chorismate	mutase	type	II
DegT_DnrJ_EryC1	PF01041.12	gi|408404240|ref|YP_006862223.1|	-	0.0018	17.4	0.1	0.0058	15.7	0.0	1.8	2	0	0	2	2	2	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
PDH	PF02153.12	gi|408404241|ref|YP_006862224.1|	-	2e-22	79.3	0.2	2.6e-22	78.9	0.2	1.1	1	0	0	1	1	1	1	Prephenate	dehydrogenase
3HCDH_N	PF02737.13	gi|408404241|ref|YP_006862224.1|	-	8.8e-07	28.7	0.5	0.00031	20.4	0.0	3.4	2	1	1	3	3	3	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_binding_2	PF03446.10	gi|408404241|ref|YP_006862224.1|	-	1.2e-06	28.4	0.3	8.1e-06	25.7	0.0	2.1	2	0	0	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
NAD_Gly3P_dh_N	PF01210.18	gi|408404241|ref|YP_006862224.1|	-	1.4e-05	24.8	0.6	0.002	17.8	0.0	2.8	1	1	1	2	2	2	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
F420_oxidored	PF03807.12	gi|408404241|ref|YP_006862224.1|	-	3.1e-05	24.3	0.3	9e-05	22.8	0.0	1.9	2	0	0	2	2	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_binding_10	PF13460.1	gi|408404241|ref|YP_006862224.1|	-	0.00085	19.3	0.0	0.0013	18.8	0.0	1.4	1	0	0	1	1	1	1	NADH(P)-binding
CoA_binding_2	PF13380.1	gi|408404241|ref|YP_006862224.1|	-	0.019	15.1	0.1	0.06	13.5	0.0	1.9	2	0	0	2	2	2	0	CoA	binding	domain
Ldh_1_N	PF00056.18	gi|408404241|ref|YP_006862224.1|	-	0.045	13.5	0.1	0.75	9.6	0.0	2.5	1	1	0	1	1	1	0	lactate/malate	dehydrogenase,	NAD	binding	domain
Prok-RING_1	PF14446.1	gi|408404242|ref|YP_006862225.1|	-	0.019	14.6	3.6	0.024	14.3	2.5	1.2	1	0	0	1	1	1	0	Prokaryotic	RING	finger	family	1
C1_1	PF00130.17	gi|408404242|ref|YP_006862225.1|	-	0.035	13.8	3.8	0.054	13.2	2.6	1.3	1	0	0	1	1	1	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
Fer2_2	PF01799.15	gi|408404242|ref|YP_006862225.1|	-	0.085	12.7	1.9	5.3	7.0	0.2	2.1	1	1	1	2	2	2	0	[2Fe-2S]	binding	domain
DUF2180	PF09947.4	gi|408404242|ref|YP_006862225.1|	-	0.13	12.0	1.9	0.15	11.7	1.3	1.2	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2180)
zf-Di19	PF05605.7	gi|408404242|ref|YP_006862225.1|	-	0.37	10.9	4.8	3.1	8.0	0.7	2.1	1	1	1	2	2	2	0	Drought	induced	19	protein	(Di19),	zinc-binding
PyrI_C	PF02748.10	gi|408404242|ref|YP_006862225.1|	-	0.47	9.9	3.6	3.9	6.9	0.2	2.4	1	1	1	2	2	2	0	Aspartate	carbamoyltransferase	regulatory	chain,	metal	binding	domain
zf-C2H2_6	PF13912.1	gi|408404242|ref|YP_006862225.1|	-	0.86	9.5	6.4	1.1	9.3	0.2	3.0	3	0	0	3	3	3	0	C2H2-type	zinc	finger
DUF4157	PF13699.1	gi|408404244|ref|YP_006862227.1|	-	2.5e-26	91.6	1.9	5.3e-26	90.5	0.2	2.1	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4157)
AsnC_trans_reg	PF01037.16	gi|408404246|ref|YP_006862229.1|	-	1.6e-09	37.3	0.1	2e-09	36.9	0.0	1.1	1	0	0	1	1	1	1	AsnC	family
ACT_4	PF13291.1	gi|408404246|ref|YP_006862229.1|	-	0.011	16.0	0.1	0.67	10.3	0.0	2.1	2	0	0	2	2	2	0	ACT	domain
NapD	PF03927.8	gi|408404246|ref|YP_006862229.1|	-	0.13	12.0	0.1	1.5	8.6	0.0	1.8	1	1	0	1	1	1	0	NapD	protein
DUF2353	PF09789.4	gi|408404250|ref|YP_006862233.1|	-	4e-05	23.0	5.4	5.1e-05	22.6	3.7	1.1	1	0	0	1	1	1	1	Uncharacterized	coiled-coil	protein	(DUF2353)
HALZ	PF02183.13	gi|408404250|ref|YP_006862233.1|	-	0.00072	19.2	18.7	0.0034	17.0	0.9	4.5	3	2	2	5	5	5	1	Homeobox	associated	leucine	zipper
TMF_TATA_bd	PF12325.3	gi|408404250|ref|YP_006862233.1|	-	0.0015	18.2	14.9	0.012	15.3	0.6	2.2	1	1	1	2	2	2	1	TATA	element	modulatory	factor	1	TATA	binding
Kinesin-relat_1	PF12711.2	gi|408404250|ref|YP_006862233.1|	-	0.0021	18.4	10.8	2.2	8.7	1.2	4.0	1	1	3	4	4	4	1	Kinesin	motor
APG6	PF04111.7	gi|408404250|ref|YP_006862233.1|	-	0.0037	16.3	14.1	0.024	13.6	7.0	2.1	1	1	1	2	2	2	1	Autophagy	protein	Apg6
DUF972	PF06156.8	gi|408404250|ref|YP_006862233.1|	-	0.0065	16.7	11.2	0.066	13.5	2.2	2.8	1	1	1	2	2	2	2	Protein	of	unknown	function	(DUF972)
DUF4201	PF13870.1	gi|408404250|ref|YP_006862233.1|	-	0.011	15.2	10.7	0.33	10.3	0.1	2.9	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF4201)
GAS	PF13851.1	gi|408404250|ref|YP_006862233.1|	-	0.012	14.8	14.3	0.016	14.4	8.3	2.0	1	1	1	2	2	2	0	Growth-arrest	specific	micro-tubule	binding
DivIC	PF04977.10	gi|408404250|ref|YP_006862233.1|	-	0.022	14.2	22.0	0.16	11.4	0.3	4.0	1	1	2	3	3	3	0	Septum	formation	initiator
SPAM	PF02090.10	gi|408404250|ref|YP_006862233.1|	-	0.032	14.2	0.9	0.032	14.2	0.6	2.2	1	1	1	2	2	2	0	Salmonella	surface	presentation	of	antigen	gene	type	M	protein
SNAPc_SNAP43	PF09808.4	gi|408404250|ref|YP_006862233.1|	-	0.051	13.2	1.0	0.077	12.6	0.7	1.2	1	0	0	1	1	1	0	Small	nuclear	RNA	activating	complex	(SNAPc),	subunit	SNAP43
Syntaxin_2	PF14523.1	gi|408404250|ref|YP_006862233.1|	-	0.074	13.0	5.8	0.17	11.9	4.0	1.7	1	1	0	1	1	1	0	Syntaxin-like	protein
CCDC155	PF14662.1	gi|408404250|ref|YP_006862233.1|	-	0.078	12.5	17.0	0.12	11.9	0.2	2.4	1	1	1	2	2	2	0	Coiled-coil	region	of	CCDC155
ADIP	PF11559.3	gi|408404250|ref|YP_006862233.1|	-	0.084	12.7	16.5	0.13	12.1	1.5	2.3	1	1	1	2	2	2	0	Afadin-	and	alpha	-actinin-Binding
ATG16	PF08614.6	gi|408404250|ref|YP_006862233.1|	-	0.088	12.6	14.1	0.36	10.6	9.8	1.8	1	1	0	1	1	1	0	Autophagy	protein	16	(ATG16)
DivIVA	PF05103.8	gi|408404250|ref|YP_006862233.1|	-	0.096	12.7	13.5	0.12	12.4	5.5	2.2	1	1	1	2	2	2	0	DivIVA	protein
TMF_DNA_bd	PF12329.3	gi|408404250|ref|YP_006862233.1|	-	0.11	12.2	20.5	0.43	10.4	4.6	3.2	1	1	2	3	3	3	0	TATA	element	modulatory	factor	1	DNA	binding
CDO_I	PF05995.7	gi|408404250|ref|YP_006862233.1|	-	0.14	11.3	0.9	2.8	7.0	0.3	2.1	2	0	0	2	2	2	0	Cysteine	dioxygenase	type	I
DUF848	PF05852.6	gi|408404250|ref|YP_006862233.1|	-	0.15	11.8	9.5	1.3	8.8	4.3	2.1	1	1	1	2	2	2	0	Gammaherpesvirus	protein	of	unknown	function	(DUF848)
Filament	PF00038.16	gi|408404250|ref|YP_006862233.1|	-	0.21	11.0	12.7	0.78	9.1	8.6	1.9	1	1	0	1	1	1	0	Intermediate	filament	protein
HAP1_N	PF04849.8	gi|408404250|ref|YP_006862233.1|	-	0.23	10.3	13.0	0.91	8.4	0.3	2.1	1	1	0	2	2	2	0	HAP1	N-terminal	conserved	region
DUF1192	PF06698.6	gi|408404250|ref|YP_006862233.1|	-	0.29	10.9	11.7	1.9	8.3	0.1	4.3	3	2	2	5	5	5	0	Protein	of	unknown	function	(DUF1192)
DUF501	PF04417.7	gi|408404250|ref|YP_006862233.1|	-	0.35	10.7	3.9	2.8	7.7	0.1	2.2	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF501)
DUF4407	PF14362.1	gi|408404250|ref|YP_006862233.1|	-	0.37	9.7	9.0	0.52	9.2	6.3	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
Atg14	PF10186.4	gi|408404250|ref|YP_006862233.1|	-	0.44	9.4	11.1	0.96	8.3	7.4	1.8	1	1	0	1	1	1	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
Mto2_bdg	PF12808.2	gi|408404250|ref|YP_006862233.1|	-	0.52	10.4	16.6	5.1	7.2	0.4	4.0	2	2	1	3	3	3	0	Micro-tubular	organiser	Mto1	C-term	Mto2-binding	region
bZIP_1	PF00170.16	gi|408404250|ref|YP_006862233.1|	-	0.67	9.9	16.3	51	3.9	6.0	4.3	1	1	3	4	4	4	0	bZIP	transcription	factor
Rootletin	PF15035.1	gi|408404250|ref|YP_006862233.1|	-	0.69	9.8	13.0	3.4	7.6	9.0	2.2	1	1	0	1	1	1	0	Ciliary	rootlet	component,	centrosome	cohesion
Cep57_CLD_2	PF14197.1	gi|408404250|ref|YP_006862233.1|	-	0.91	9.5	15.2	2.2	8.3	0.1	3.3	2	2	0	3	3	3	0	Centrosome	localisation	domain	of	PPC89
IncA	PF04156.9	gi|408404250|ref|YP_006862233.1|	-	1.1	8.7	17.0	9.7	5.7	11.8	2.1	1	1	0	1	1	1	0	IncA	protein
bZIP_2	PF07716.10	gi|408404250|ref|YP_006862233.1|	-	1.4	8.7	17.7	7.5	6.4	4.2	4.5	2	2	3	5	5	5	0	Basic	region	leucine	zipper
FlgN	PF05130.7	gi|408404250|ref|YP_006862233.1|	-	1.5	9.0	16.9	10	6.3	0.2	2.4	1	1	1	2	2	2	0	FlgN	protein
Rab5-bind	PF09311.6	gi|408404250|ref|YP_006862233.1|	-	1.7	8.5	15.4	6.4	6.6	8.1	2.2	1	1	1	2	2	2	0	Rabaptin-like	protein
DUF342	PF03961.8	gi|408404250|ref|YP_006862233.1|	-	1.8	6.8	8.7	3.9	5.7	6.1	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF342)
GldM_N	PF12081.3	gi|408404250|ref|YP_006862233.1|	-	2.5	7.5	10.5	1.5	8.2	0.1	2.3	1	1	0	2	2	2	0	GldM	N-terminal	domain
DUF904	PF06005.7	gi|408404250|ref|YP_006862233.1|	-	2.7	8.3	19.3	2.2e+02	2.2	0.1	3.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF904)
YlqD	PF11068.3	gi|408404250|ref|YP_006862233.1|	-	2.8	7.9	9.8	1.3e+02	2.5	6.6	2.2	1	1	0	1	1	1	0	YlqD	protein
Baculo_PEP_C	PF04513.7	gi|408404250|ref|YP_006862233.1|	-	3.7	7.3	8.6	4.7	7.0	5.2	1.6	1	1	1	2	2	2	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
NYD-SP28_assoc	PF14775.1	gi|408404250|ref|YP_006862233.1|	-	6.8	6.4	14.0	3	7.6	0.1	4.5	3	2	1	4	4	3	0	Sperm	tail	C-terminal	domain
Polyketide_cyc2	PF10604.4	gi|408404252|ref|YP_006862235.1|	-	5.5e-17	62.2	0.0	6.1e-17	62.1	0.0	1.0	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
AHSA1	PF08327.6	gi|408404252|ref|YP_006862235.1|	-	4.1e-11	43.0	0.1	4.8e-11	42.8	0.1	1.1	1	0	0	1	1	1	1	Activator	of	Hsp90	ATPase	homolog	1-like	protein
Polyketide_cyc	PF03364.15	gi|408404252|ref|YP_006862235.1|	-	1.9e-06	27.9	0.0	2.3e-06	27.6	0.0	1.4	1	1	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
COXG	PF06240.8	gi|408404252|ref|YP_006862235.1|	-	0.069	12.8	0.0	0.12	12.0	0.0	1.5	1	0	0	1	1	1	0	Carbon	monoxide	dehydrogenase	subunit	G	(CoxG)
DnaJ	PF00226.26	gi|408404253|ref|YP_006862236.1|	-	1.6e-26	91.8	4.2	3.3e-26	90.7	0.8	2.0	2	0	0	2	2	2	1	DnaJ	domain
DUF493	PF04359.9	gi|408404253|ref|YP_006862236.1|	-	0.0021	18.3	0.1	0.0034	17.7	0.1	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF493)
Gp-FAR-1	PF05823.7	gi|408404253|ref|YP_006862236.1|	-	0.087	12.7	0.2	0.12	12.3	0.1	1.1	1	0	0	1	1	1	0	Nematode	fatty	acid	retinoid	binding	protein	(Gp-FAR-1)
ATP-synt_F	PF01990.12	gi|408404254|ref|YP_006862237.1|	-	5.1e-17	62.0	0.0	5.6e-17	61.9	0.0	1.0	1	0	0	1	1	1	1	ATP	synthase	(F/14-kDa)	subunit
tRNA_synt_1c_R1	PF04558.10	gi|408404254|ref|YP_006862237.1|	-	0.12	11.9	0.0	0.14	11.6	0.0	1.2	1	0	0	1	1	1	0	Glutaminyl-tRNA	synthetase,	non-specific	RNA	binding	region	part	1
Aldolase_II	PF00596.16	gi|408404255|ref|YP_006862238.1|	-	8.8e-42	142.7	0.0	9.9e-42	142.6	0.0	1.0	1	0	0	1	1	1	1	Class	II	Aldolase	and	Adducin	N-terminal	domain
GSDH	PF07995.6	gi|408404256|ref|YP_006862239.1|	-	3.3e-48	164.4	0.3	4e-48	164.2	0.2	1.1	1	0	0	1	1	1	1	Glucose	/	Sorbosone	dehydrogenase
Response_reg	PF00072.19	gi|408404257|ref|YP_006862240.1|	-	0.00012	22.0	0.1	0.00015	21.7	0.0	1.1	1	0	0	1	1	1	1	Response	regulator	receiver	domain
CDP-OH_P_transf	PF01066.16	gi|408404259|ref|YP_006862242.1|	-	1.4e-14	54.2	8.6	2.8e-14	53.2	6.0	1.7	1	1	0	1	1	1	1	CDP-alcohol	phosphatidyltransferase
DUF4131	PF13567.1	gi|408404259|ref|YP_006862242.1|	-	4.1	6.7	8.9	2.8	7.3	0.3	2.5	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4131)
Ribosomal_S26e	PF01283.14	gi|408404260|ref|YP_006862243.1|	-	4.5e-30	104.2	1.7	4.9e-30	104.1	1.1	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S26e
zf-dskA_traR	PF01258.12	gi|408404260|ref|YP_006862243.1|	-	0.034	13.9	0.1	3	7.6	0.0	2.3	2	0	0	2	2	2	0	Prokaryotic	dksA/traR	C4-type	zinc	finger
Auto_anti-p27	PF06677.7	gi|408404260|ref|YP_006862243.1|	-	0.06	13.1	1.8	1.1	9.0	0.1	2.3	2	0	0	2	2	2	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
Lar_restr_allev	PF14354.1	gi|408404260|ref|YP_006862243.1|	-	0.085	13.1	1.4	0.86	9.9	0.0	2.1	1	1	1	2	2	2	0	Restriction	alleviation	protein	Lar
DUF2112	PF09885.4	gi|408404260|ref|YP_006862243.1|	-	0.13	11.8	0.0	0.17	11.5	0.0	1.1	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2112)
PfkB	PF00294.19	gi|408404262|ref|YP_006862245.1|	-	1.3e-06	27.7	0.0	2.7e-06	26.7	0.0	1.5	1	1	0	1	1	1	1	pfkB	family	carbohydrate	kinase
Phos_pyr_kin	PF08543.7	gi|408404262|ref|YP_006862245.1|	-	0.003	16.7	0.0	0.0044	16.2	0.0	1.2	1	0	0	1	1	1	1	Phosphomethylpyrimidine	kinase
NAD_kinase	PF01513.16	gi|408404263|ref|YP_006862246.1|	-	1.8e-34	118.8	0.1	2.2e-34	118.5	0.1	1.1	1	0	0	1	1	1	1	ATP-NAD	kinase
MarR	PF01047.17	gi|408404263|ref|YP_006862246.1|	-	0.00035	20.2	0.3	0.00067	19.3	0.2	1.5	1	0	0	1	1	1	1	MarR	family
MarR_2	PF12802.2	gi|408404263|ref|YP_006862246.1|	-	0.00038	20.0	0.1	0.00067	19.2	0.1	1.4	1	0	0	1	1	1	1	MarR	family
HTH_27	PF13463.1	gi|408404263|ref|YP_006862246.1|	-	0.00053	20.2	0.2	0.0012	19.1	0.1	1.6	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
TrmB	PF01978.14	gi|408404263|ref|YP_006862246.1|	-	0.0043	16.7	0.2	0.01	15.4	0.1	1.7	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.1	gi|408404263|ref|YP_006862246.1|	-	0.0075	15.6	0.2	0.016	14.6	0.1	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
FeoC	PF09012.5	gi|408404263|ref|YP_006862246.1|	-	0.0077	15.9	0.1	0.016	14.8	0.0	1.5	1	0	0	1	1	1	1	FeoC	like	transcriptional	regulator
RNA_pol_Rpc34	PF05158.7	gi|408404263|ref|YP_006862246.1|	-	0.019	14.1	0.1	0.025	13.7	0.1	1.2	1	0	0	1	1	1	0	RNA	polymerase	Rpc34	subunit
HTH_9	PF08221.6	gi|408404263|ref|YP_006862246.1|	-	0.022	14.6	0.1	0.048	13.5	0.0	1.5	1	0	0	1	1	1	0	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
HTH_IclR	PF09339.5	gi|408404263|ref|YP_006862246.1|	-	0.054	13.0	0.1	0.2	11.2	0.1	2.0	1	1	1	2	2	2	0	IclR	helix-turn-helix	domain
TFIIE_alpha	PF02002.12	gi|408404263|ref|YP_006862246.1|	-	0.076	12.5	0.1	0.2	11.1	0.1	1.7	2	0	0	2	2	2	0	TFIIE	alpha	subunit
CTP_synth_N	PF06418.9	gi|408404264|ref|YP_006862247.1|	-	9.4e-124	411.9	0.0	1.2e-123	411.6	0.0	1.1	1	0	0	1	1	1	1	CTP	synthase	N-terminus
GATase	PF00117.23	gi|408404264|ref|YP_006862247.1|	-	2e-45	154.6	0.0	3.1e-45	154.0	0.0	1.3	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.8	gi|408404264|ref|YP_006862247.1|	-	9e-11	41.6	0.0	6.1e-10	38.9	0.0	2.0	2	0	0	2	2	2	1	Peptidase	C26
CbiA	PF01656.18	gi|408404264|ref|YP_006862247.1|	-	3.9e-06	26.3	0.1	6e-06	25.7	0.0	1.3	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
SERTA	PF06031.8	gi|408404266|ref|YP_006862249.1|	-	0.039	13.2	0.6	0.14	11.5	0.1	2.0	2	0	0	2	2	2	0	SERTA	motif
LAGLIDADG_1	PF00961.14	gi|408404267|ref|YP_006862250.1|	-	0.0046	17.4	0.2	0.0055	17.2	0.1	1.2	1	0	0	1	1	1	1	LAGLIDADG	endonuclease
TrmB	PF01978.14	gi|408404267|ref|YP_006862250.1|	-	0.038	13.7	0.2	0.053	13.2	0.1	1.4	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HisK_N	PF09385.5	gi|408404267|ref|YP_006862250.1|	-	0.075	12.6	0.5	0.08	12.5	0.4	1.0	1	0	0	1	1	1	0	Histidine	kinase	N	terminal
AAA_22	PF13401.1	gi|408404268|ref|YP_006862251.1|	-	4.5e-08	33.3	0.1	1.6e-07	31.5	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.1	gi|408404268|ref|YP_006862251.1|	-	2.6e-05	24.2	0.0	7.9e-05	22.7	0.0	1.9	2	1	0	2	2	2	1	AAA	ATPase	domain
Arch_ATPase	PF01637.13	gi|408404268|ref|YP_006862251.1|	-	0.00033	20.4	2.4	0.00066	19.4	0.5	2.1	1	1	1	2	2	2	1	Archaeal	ATPase
AAA	PF00004.24	gi|408404268|ref|YP_006862251.1|	-	0.00076	19.6	0.0	0.003	17.7	0.0	2.0	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
NB-ARC	PF00931.17	gi|408404268|ref|YP_006862251.1|	-	0.023	13.5	0.0	0.037	12.8	0.0	1.3	1	0	0	1	1	1	0	NB-ARC	domain
NACHT	PF05729.7	gi|408404268|ref|YP_006862251.1|	-	0.078	12.6	0.1	0.19	11.3	0.0	1.7	1	1	0	1	1	1	0	NACHT	domain
MarR_2	PF12802.2	gi|408404268|ref|YP_006862251.1|	-	0.12	12.0	0.1	0.34	10.6	0.1	1.8	1	0	0	1	1	1	0	MarR	family
IGPS	PF00218.16	gi|408404269|ref|YP_006862252.1|	-	4.8e-64	215.8	0.5	5.5e-64	215.6	0.4	1.0	1	0	0	1	1	1	1	Indole-3-glycerol	phosphate	synthase
QRPTase_C	PF01729.14	gi|408404269|ref|YP_006862252.1|	-	3e-05	23.5	0.4	4.8e-05	22.9	0.0	1.5	2	0	0	2	2	2	1	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
NanE	PF04131.9	gi|408404269|ref|YP_006862252.1|	-	0.0058	15.6	0.4	0.41	9.5	0.3	3.4	1	1	2	3	3	3	1	Putative	N-acetylmannosamine-6-phosphate	epimerase
AP_endonuc_2	PF01261.19	gi|408404269|ref|YP_006862252.1|	-	0.021	14.1	0.0	0.03	13.6	0.0	1.3	1	0	0	1	1	1	0	Xylose	isomerase-like	TIM	barrel
His_biosynth	PF00977.16	gi|408404269|ref|YP_006862252.1|	-	0.057	12.6	0.2	0.18	11.0	0.0	1.8	2	0	0	2	2	2	0	Histidine	biosynthesis	protein
FMN_dh	PF01070.13	gi|408404269|ref|YP_006862252.1|	-	0.1	11.3	0.2	0.79	8.4	0.1	2.0	1	1	0	1	1	1	0	FMN-dependent	dehydrogenase
Hydrolase_like	PF13242.1	gi|408404269|ref|YP_006862252.1|	-	0.11	12.2	0.1	7.2	6.3	0.0	2.4	2	0	0	2	2	2	0	HAD-hyrolase-like
Glyco_hydro_97	PF10566.4	gi|408404269|ref|YP_006862252.1|	-	0.16	11.0	0.0	0.22	10.5	0.0	1.2	1	0	0	1	1	1	0	Glycoside	hydrolase	97
PALP	PF00291.20	gi|408404270|ref|YP_006862253.1|	-	3.8e-39	134.7	0.2	4.6e-39	134.4	0.2	1.1	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
Trp_syntA	PF00290.15	gi|408404271|ref|YP_006862254.1|	-	2.5e-88	294.9	0.2	3e-88	294.7	0.1	1.0	1	0	0	1	1	1	1	Tryptophan	synthase	alpha	chain
His_biosynth	PF00977.16	gi|408404271|ref|YP_006862254.1|	-	2.2e-06	27.1	0.1	4.4e-06	26.1	0.0	1.5	1	0	0	1	1	1	1	Histidine	biosynthesis	protein
ThiG	PF05690.9	gi|408404271|ref|YP_006862254.1|	-	4.4e-05	22.6	0.1	8.7e-05	21.7	0.1	1.5	1	0	0	1	1	1	1	Thiazole	biosynthesis	protein	ThiG
PcrB	PF01884.12	gi|408404271|ref|YP_006862254.1|	-	6e-05	22.4	1.2	0.00021	20.6	0.2	2.0	2	0	0	2	2	2	1	PcrB	family
NanE	PF04131.9	gi|408404271|ref|YP_006862254.1|	-	0.0001	21.3	0.3	0.00032	19.7	0.0	1.8	2	0	0	2	2	2	1	Putative	N-acetylmannosamine-6-phosphate	epimerase
Ribul_P_3_epim	PF00834.14	gi|408404271|ref|YP_006862254.1|	-	0.00052	19.1	0.1	0.002	17.2	0.0	1.8	2	0	0	2	2	2	1	Ribulose-phosphate	3	epimerase	family
DHO_dh	PF01180.16	gi|408404271|ref|YP_006862254.1|	-	0.00086	18.3	0.1	0.0012	17.9	0.0	1.2	1	0	0	1	1	1	1	Dihydroorotate	dehydrogenase
IMPDH	PF00478.20	gi|408404271|ref|YP_006862254.1|	-	0.0018	17.2	1.8	0.086	11.7	0.2	2.2	2	1	0	2	2	2	1	IMP	dehydrogenase	/	GMP	reductase	domain
HMGL-like	PF00682.14	gi|408404271|ref|YP_006862254.1|	-	0.041	13.5	0.1	4.6	6.8	0.0	2.3	2	0	0	2	2	2	0	HMGL-like
FMN_dh	PF01070.13	gi|408404271|ref|YP_006862254.1|	-	0.042	12.6	0.2	0.11	11.3	0.1	1.6	2	0	0	2	2	2	0	FMN-dependent	dehydrogenase
IGPS	PF00218.16	gi|408404271|ref|YP_006862254.1|	-	0.12	11.3	0.0	0.25	10.3	0.0	1.5	1	0	0	1	1	1	0	Indole-3-glycerol	phosphate	synthase
YcfA	PF07927.7	gi|408404273|ref|YP_006862256.1|	-	0.006	16.4	0.1	0.0092	15.8	0.1	1.2	1	0	0	1	1	1	1	YcfA-like	protein
Cloacin_immun	PF03513.9	gi|408404274|ref|YP_006862257.1|	-	0.11	12.5	0.0	0.18	11.8	0.0	1.3	1	0	0	1	1	1	0	Cloacin	immunity	protein
APG6	PF04111.7	gi|408404275|ref|YP_006862258.1|	-	0.00089	18.3	7.3	0.00089	18.3	5.1	2.1	1	1	1	2	2	2	1	Autophagy	protein	Apg6
UPF0228	PF05727.6	gi|408404275|ref|YP_006862258.1|	-	0.002	17.8	2.6	0.0043	16.7	1.7	1.7	1	1	0	1	1	1	1	Uncharacterised	protein	family	(UPF0228)
DUF4201	PF13870.1	gi|408404275|ref|YP_006862258.1|	-	0.012	15.0	23.0	0.015	14.7	6.4	2.7	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF4201)
Cep57_CLD_2	PF14197.1	gi|408404275|ref|YP_006862258.1|	-	0.034	14.0	2.1	0.034	14.0	1.4	3.6	2	2	1	3	3	3	0	Centrosome	localisation	domain	of	PPC89
Reo_sigmaC	PF04582.7	gi|408404275|ref|YP_006862258.1|	-	0.14	11.3	7.5	1.3	8.0	0.7	2.1	1	1	1	2	2	2	0	Reovirus	sigma	C	capsid	protein
FdhE	PF04216.7	gi|408404275|ref|YP_006862258.1|	-	0.23	11.1	8.5	0.19	11.3	4.9	1.5	1	1	0	1	1	1	0	Protein	involved	in	formate	dehydrogenase	formation
DUF2461	PF09365.5	gi|408404275|ref|YP_006862258.1|	-	0.24	10.7	4.3	0.18	11.1	1.2	2.0	1	1	0	1	1	1	0	Conserved	hypothetical	protein	(DUF2461)
Sec34	PF04136.10	gi|408404275|ref|YP_006862258.1|	-	0.39	10.4	7.9	0.61	9.7	0.2	3.1	1	1	2	4	4	4	0	Sec34-like	family
Cupin_4	PF08007.7	gi|408404275|ref|YP_006862258.1|	-	0.47	9.6	6.5	0.13	11.4	1.4	2.0	2	0	0	2	2	2	0	Cupin	superfamily	protein
UPF0184	PF03670.8	gi|408404275|ref|YP_006862258.1|	-	0.56	10.4	8.9	2.3	8.4	0.0	3.7	2	2	2	4	4	4	0	Uncharacterised	protein	family	(UPF0184)
DUF2265	PF10023.4	gi|408404275|ref|YP_006862258.1|	-	0.67	9.0	6.7	0.16	11.0	0.3	2.2	1	1	0	2	2	2	0	Predicted	aminopeptidase	(DUF2265)
Nup54	PF13874.1	gi|408404275|ref|YP_006862258.1|	-	1.2	8.8	18.9	1.1	8.8	2.4	2.6	1	1	1	2	2	2	0	Nucleoporin	complex	subunit	54
Atg14	PF10186.4	gi|408404275|ref|YP_006862258.1|	-	1.9	7.3	26.5	4.8	6.0	7.5	2.2	1	1	1	2	2	2	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
FUSC	PF04632.7	gi|408404275|ref|YP_006862258.1|	-	1.9	6.8	8.6	4.3	5.6	5.9	1.5	1	1	0	1	1	1	0	Fusaric	acid	resistance	protein	family
Laminin_II	PF06009.7	gi|408404275|ref|YP_006862258.1|	-	1.9	8.2	17.6	0.19	11.4	0.9	2.9	1	1	1	3	3	3	0	Laminin	Domain	II
TPR_MLP1_2	PF07926.7	gi|408404275|ref|YP_006862258.1|	-	2.2	8.0	25.2	0.22	11.2	1.2	3.6	1	1	1	2	2	1	0	TPR/MLP1/MLP2-like	protein
DUF4407	PF14362.1	gi|408404275|ref|YP_006862258.1|	-	2.4	7.0	19.2	1.1e+02	1.6	13.0	2.3	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
DUF1664	PF07889.7	gi|408404275|ref|YP_006862258.1|	-	4	7.2	19.1	7.3	6.4	3.4	3.5	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF1664)
TMPIT	PF07851.8	gi|408404275|ref|YP_006862258.1|	-	5.6	5.9	12.9	0.49	9.4	2.3	2.2	1	1	1	2	2	2	0	TMPIT-like	protein
DUF342	PF03961.8	gi|408404275|ref|YP_006862258.1|	-	6	5.1	22.2	0.2	10.0	2.8	2.6	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF342)
Flagellin_C	PF00700.16	gi|408404275|ref|YP_006862258.1|	-	6.9	6.9	10.2	4.3	7.5	0.3	3.4	2	1	1	4	4	4	0	Bacterial	flagellin	C-terminal	helical	region
GLE1	PF07817.8	gi|408404275|ref|YP_006862258.1|	-	9.9	5.0	8.6	1	8.2	0.6	2.3	2	0	0	2	2	2	0	GLE1-like	protein
Rad51	PF08423.6	gi|408404276|ref|YP_006862259.1|	-	6.2e-90	300.5	0.0	7.7e-90	300.2	0.0	1.1	1	0	0	1	1	1	1	Rad51
KaiC	PF06745.8	gi|408404276|ref|YP_006862259.1|	-	3.3e-11	42.7	0.1	5.8e-11	41.9	0.0	1.4	1	0	0	1	1	1	1	KaiC
AAA_25	PF13481.1	gi|408404276|ref|YP_006862259.1|	-	1.1e-10	41.3	0.0	1.7e-10	40.6	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
RecA	PF00154.16	gi|408404276|ref|YP_006862259.1|	-	1.5e-09	37.4	0.1	2.4e-09	36.7	0.1	1.3	1	0	0	1	1	1	1	recA	bacterial	DNA	recombination	protein
HHH_5	PF14520.1	gi|408404276|ref|YP_006862259.1|	-	2.1e-09	37.4	2.2	4.3e-09	36.4	0.9	2.0	2	0	0	2	2	2	1	Helix-hairpin-helix	domain
DUF4332	PF14229.1	gi|408404276|ref|YP_006862259.1|	-	0.0014	18.5	0.1	0.0046	16.9	0.0	1.9	3	0	0	3	3	3	1	Domain	of	unknown	function	(DUF4332)
Cdd1	PF11731.3	gi|408404276|ref|YP_006862259.1|	-	0.0069	16.2	0.0	0.015	15.1	0.0	1.5	1	0	0	1	1	1	1	Pathogenicity	locus
TfoX_C	PF04994.8	gi|408404276|ref|YP_006862259.1|	-	0.015	15.2	0.0	0.041	13.8	0.0	1.8	2	0	0	2	2	2	0	TfoX	C-terminal	domain
AAA	PF00004.24	gi|408404276|ref|YP_006862259.1|	-	0.035	14.2	1.1	0.24	11.6	0.1	2.6	2	1	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
DNA_pol_lambd_f	PF10391.4	gi|408404276|ref|YP_006862259.1|	-	0.043	13.3	0.0	0.11	12.0	0.0	1.7	1	0	0	1	1	1	0	Fingers	domain	of	DNA	polymerase	lambda
TrwB_AAD_bind	PF10412.4	gi|408404276|ref|YP_006862259.1|	-	0.056	12.0	0.0	0.1	11.2	0.0	1.4	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
HHH	PF00633.18	gi|408404276|ref|YP_006862259.1|	-	0.065	12.9	0.0	0.18	11.5	0.0	1.7	1	0	0	1	1	1	0	Helix-hairpin-helix	motif
IMS_HHH	PF11798.3	gi|408404276|ref|YP_006862259.1|	-	0.13	12.3	0.0	0.39	10.8	0.0	1.9	1	0	0	1	1	1	0	IMS	family	HHH	motif
Glycos_transf_3	PF00591.16	gi|408404277|ref|YP_006862260.1|	-	2.1e-79	266.4	0.4	2.7e-79	266.1	0.3	1.1	1	0	0	1	1	1	1	Glycosyl	transferase	family,	a/b	domain
Glycos_trans_3N	PF02885.12	gi|408404277|ref|YP_006862260.1|	-	8.7e-16	57.2	0.1	1.7e-15	56.3	0.1	1.5	1	0	0	1	1	1	1	Glycosyl	transferase	family,	helical	bundle	domain
GATase	PF00117.23	gi|408404278|ref|YP_006862261.1|	-	1.9e-59	200.3	0.1	2.2e-59	200.1	0.1	1.0	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.8	gi|408404278|ref|YP_006862261.1|	-	8.5e-11	41.7	0.0	1.4e-10	41.0	0.0	1.3	1	0	0	1	1	1	1	Peptidase	C26
SNO	PF01174.14	gi|408404278|ref|YP_006862261.1|	-	0.0081	15.7	0.0	0.014	15.0	0.0	1.4	1	1	0	1	1	1	1	SNO	glutamine	amidotransferase	family
Response_reg	PF00072.19	gi|408404278|ref|YP_006862261.1|	-	0.11	12.5	0.0	0.28	11.2	0.0	1.7	1	1	0	1	1	1	0	Response	regulator	receiver	domain
DapB_N	PF01113.15	gi|408404279|ref|YP_006862262.1|	-	4.7e-07	29.7	0.1	1e-05	25.4	0.1	2.2	2	0	0	2	2	2	1	Dihydrodipicolinate	reductase,	N-terminus
Gp_dh_N	PF00044.19	gi|408404279|ref|YP_006862262.1|	-	2.6e-06	27.4	4.2	2.8e-06	27.3	1.0	2.4	2	1	0	2	2	2	1	Glyceraldehyde	3-phosphate	dehydrogenase,	NAD	binding	domain
Gp_dh_C	PF02800.15	gi|408404279|ref|YP_006862262.1|	-	0.0033	16.9	0.0	0.0075	15.7	0.0	1.6	1	0	0	1	1	1	1	Glyceraldehyde	3-phosphate	dehydrogenase,	C-terminal	domain
F420_oxidored	PF03807.12	gi|408404279|ref|YP_006862262.1|	-	0.014	15.8	0.3	0.056	13.8	0.2	2.0	1	1	0	1	1	1	0	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_binding_3	PF03447.11	gi|408404279|ref|YP_006862262.1|	-	0.019	15.3	0.1	0.074	13.4	0.0	1.9	2	0	0	2	2	2	0	Homoserine	dehydrogenase,	NAD	binding	domain
TrkA_N	PF02254.13	gi|408404279|ref|YP_006862262.1|	-	0.089	12.7	0.0	0.22	11.5	0.0	1.6	1	0	0	1	1	1	0	TrkA-N	domain
2-Hacid_dh_C	PF02826.14	gi|408404279|ref|YP_006862262.1|	-	0.14	11.2	0.5	1.4	7.9	0.1	2.5	2	1	0	2	2	2	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Methyltransf_21	PF05050.7	gi|408404283|ref|YP_006862266.1|	-	1.3e-25	90.2	0.1	1.8e-25	89.8	0.1	1.2	1	0	0	1	1	1	1	Methyltransferase	FkbM	domain
Met_10	PF02475.11	gi|408404283|ref|YP_006862266.1|	-	3.6e-08	33.2	0.0	6.2e-08	32.4	0.0	1.4	1	0	0	1	1	1	1	Met-10+	like-protein
Methyltransf_18	PF12847.2	gi|408404283|ref|YP_006862266.1|	-	0.00017	22.1	0.0	0.00032	21.2	0.0	1.6	1	1	0	1	1	1	1	Methyltransferase	domain
V_cholerae_RfbT	PF05575.6	gi|408404283|ref|YP_006862266.1|	-	0.00083	18.4	0.6	0.0012	17.9	0.4	1.1	1	0	0	1	1	1	1	Vibrio	cholerae	RfbT	protein
FtsJ	PF01728.14	gi|408404283|ref|YP_006862266.1|	-	0.0065	16.4	0.0	0.0098	15.8	0.0	1.3	1	1	0	1	1	1	1	FtsJ-like	methyltransferase
PCMT	PF01135.14	gi|408404283|ref|YP_006862266.1|	-	0.0073	15.8	0.0	0.012	15.2	0.0	1.2	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_10	PF05971.7	gi|408404283|ref|YP_006862266.1|	-	0.042	12.9	0.0	0.058	12.5	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF890)
Methyltransf_22	PF13383.1	gi|408404283|ref|YP_006862266.1|	-	0.062	12.8	0.0	0.093	12.2	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltransf_21	PF05050.7	gi|408404284|ref|YP_006862267.1|	-	1e-26	93.8	0.0	1.6e-26	93.2	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	FkbM	domain
Met_10	PF02475.11	gi|408404284|ref|YP_006862267.1|	-	1.3e-09	37.9	0.0	2.6e-09	36.9	0.0	1.4	1	0	0	1	1	1	1	Met-10+	like-protein
Methyltransf_18	PF12847.2	gi|408404284|ref|YP_006862267.1|	-	5.3e-06	26.9	0.0	2.2e-05	25.0	0.0	2.1	3	0	0	3	3	3	1	Methyltransferase	domain
Methyltransf_3	PF01596.12	gi|408404284|ref|YP_006862267.1|	-	0.00064	18.8	0.0	0.0011	18.0	0.0	1.3	1	0	0	1	1	1	1	O-methyltransferase
Methyltransf_22	PF13383.1	gi|408404284|ref|YP_006862267.1|	-	0.0019	17.7	0.1	0.0031	17.0	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
FtsJ	PF01728.14	gi|408404284|ref|YP_006862267.1|	-	0.0073	16.3	0.0	0.01	15.8	0.0	1.2	1	0	0	1	1	1	1	FtsJ-like	methyltransferase
Methyltransf_26	PF13659.1	gi|408404284|ref|YP_006862267.1|	-	0.019	14.9	0.0	0.044	13.8	0.0	1.7	2	0	0	2	2	2	0	Methyltransferase	domain
Methyltransf_4	PF02390.12	gi|408404284|ref|YP_006862267.1|	-	0.029	13.4	0.0	0.049	12.6	0.0	1.3	1	0	0	1	1	1	0	Putative	methyltransferase
PCMT	PF01135.14	gi|408404284|ref|YP_006862267.1|	-	0.055	13.0	0.0	0.091	12.2	0.0	1.3	1	0	0	1	1	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Glyco_trans_1_4	PF13692.1	gi|408404285|ref|YP_006862268.1|	-	1.6e-08	34.8	0.0	5.2e-08	33.1	0.0	1.9	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glycos_transf_1	PF00534.15	gi|408404285|ref|YP_006862268.1|	-	3.5e-06	26.5	0.0	9.7e-06	25.1	0.0	1.7	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.1	gi|408404285|ref|YP_006862268.1|	-	5.4e-06	26.5	0.0	1.2e-05	25.4	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.1	gi|408404285|ref|YP_006862268.1|	-	0.00049	19.8	0.0	0.001	18.8	0.0	1.6	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_transf_5	PF08323.6	gi|408404285|ref|YP_006862268.1|	-	0.00054	19.5	0.1	0.0056	16.2	0.0	2.3	1	1	0	2	2	2	1	Starch	synthase	catalytic	domain
Glyco_trans_4_4	PF13579.1	gi|408404285|ref|YP_006862268.1|	-	0.00066	19.8	0.0	0.023	14.8	0.0	2.4	1	1	0	1	1	1	1	Glycosyl	transferase	4-like	domain
SHP	PF03579.8	gi|408404286|ref|YP_006862269.1|	-	0.098	12.0	1.9	0.1	12.0	0.1	1.9	2	0	0	2	2	2	0	Small	hydrophobic	protein
Glyco_trans_1_4	PF13692.1	gi|408404287|ref|YP_006862270.1|	-	2e-08	34.4	0.0	4.3e-08	33.3	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glycos_transf_1	PF00534.15	gi|408404287|ref|YP_006862270.1|	-	0.00011	21.6	0.0	0.00041	19.8	0.0	2.0	1	1	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_5	PF08323.6	gi|408404287|ref|YP_006862270.1|	-	0.00053	19.5	0.0	0.0044	16.5	0.0	2.4	3	0	0	3	3	3	1	Starch	synthase	catalytic	domain
Glyco_transf_4	PF13439.1	gi|408404287|ref|YP_006862270.1|	-	0.0028	17.4	0.0	0.027	14.2	0.0	2.0	1	1	1	2	2	2	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.1	gi|408404287|ref|YP_006862270.1|	-	0.012	15.7	0.0	0.043	13.9	0.0	1.9	1	1	0	1	1	1	0	Glycosyl	transferase	4-like	domain
Glycos_transf_1	PF00534.15	gi|408404288|ref|YP_006862271.1|	-	1.1e-23	83.4	0.0	4.3e-23	81.5	0.0	1.8	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.1	gi|408404288|ref|YP_006862271.1|	-	2e-10	40.9	0.0	6.7e-10	39.2	0.0	1.8	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.1	gi|408404288|ref|YP_006862271.1|	-	4.2e-09	36.3	0.0	7.8e-09	35.4	0.0	1.5	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Transketolase_C	PF02780.15	gi|408404288|ref|YP_006862271.1|	-	0.077	12.9	0.1	0.25	11.2	0.0	1.9	2	0	0	2	2	2	0	Transketolase,	C-terminal	domain
mRNA_cap_enzyme	PF01331.14	gi|408404290|ref|YP_006862273.1|	-	0.063	12.9	0.1	0.089	12.4	0.1	1.3	1	1	1	2	2	2	0	mRNA	capping	enzyme,	catalytic	domain
DUF2660	PF10859.3	gi|408404290|ref|YP_006862273.1|	-	0.093	12.9	0.1	0.097	12.8	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2660)
CBS	PF00571.23	gi|408404293|ref|YP_006862276.1|	-	1.9e-15	56.3	4.9	1.3e-10	40.9	0.1	2.9	2	1	0	2	2	2	2	CBS	domain
HTH_3	PF01381.17	gi|408404293|ref|YP_006862276.1|	-	2.9e-13	49.4	0.2	5.4e-13	48.5	0.1	1.4	1	0	0	1	1	1	1	Helix-turn-helix
HTH_19	PF12844.2	gi|408404293|ref|YP_006862276.1|	-	3.6e-12	46.1	0.1	7.3e-12	45.1	0.1	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_31	PF13560.1	gi|408404293|ref|YP_006862276.1|	-	1.1e-11	44.6	0.0	1.8e-11	44.0	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_25	PF13413.1	gi|408404293|ref|YP_006862276.1|	-	0.00033	20.2	0.0	0.00057	19.4	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_26	PF13443.1	gi|408404293|ref|YP_006862276.1|	-	0.014	15.5	0.1	0.033	14.3	0.0	1.6	1	0	0	1	1	1	0	Cro/C1-type	HTH	DNA-binding	domain
HTH_37	PF13744.1	gi|408404293|ref|YP_006862276.1|	-	0.014	15.1	0.1	0.041	13.6	0.0	1.7	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_23	PF13384.1	gi|408404293|ref|YP_006862276.1|	-	0.13	11.9	0.1	0.25	11.0	0.1	1.5	1	0	0	1	1	1	0	Homeodomain-like	domain
DUF4157	PF13699.1	gi|408404295|ref|YP_006862278.1|	-	2e-22	79.0	0.0	4.6e-22	77.9	0.0	1.6	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4157)
eRF1_2	PF03464.10	gi|408404296|ref|YP_006862279.1|	-	1.3e-36	125.8	0.8	2.6e-36	124.8	0.0	1.9	3	0	0	3	3	3	1	eRF1	domain	2
eRF1_3	PF03465.10	gi|408404296|ref|YP_006862279.1|	-	1.3e-21	76.9	0.1	3.4e-21	75.6	0.1	1.8	1	0	0	1	1	1	1	eRF1	domain	3
eRF1_1	PF03463.10	gi|408404296|ref|YP_006862279.1|	-	7.1e-20	70.9	0.0	1.3e-19	70.1	0.0	1.4	1	0	0	1	1	1	1	eRF1	domain	1
Ribosomal_L7Ae	PF01248.21	gi|408404296|ref|YP_006862279.1|	-	0.02	14.3	0.2	0.045	13.2	0.1	1.7	1	0	0	1	1	1	0	Ribosomal	protein	L7Ae/L30e/S12e/Gadd45	family
Cytochrome_C7	PF14522.1	gi|408404296|ref|YP_006862279.1|	-	0.027	14.1	0.1	0.046	13.3	0.1	1.3	1	0	0	1	1	1	0	Cytochrome	c7
HypA	PF01155.14	gi|408404296|ref|YP_006862279.1|	-	0.067	12.8	0.2	0.14	11.8	0.2	1.5	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
Glyco_transf_90	PF05686.7	gi|408404296|ref|YP_006862279.1|	-	0.14	10.8	0.0	0.2	10.2	0.0	1.2	1	0	0	1	1	1	0	Glycosyl	transferase	family	90
Zn-ribbon_8	PF09723.5	gi|408404296|ref|YP_006862279.1|	-	1.3	9.0	5.8	1.6	8.7	2.2	2.5	2	1	0	2	2	2	0	Zinc	ribbon	domain
HATPase_c_3	PF13589.1	gi|408404297|ref|YP_006862280.1|	-	1.1e-12	47.7	0.0	2e-12	46.9	0.0	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c	PF02518.21	gi|408404297|ref|YP_006862280.1|	-	0.0022	17.6	0.1	0.0062	16.2	0.0	1.8	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PP2C_C	PF07830.8	gi|408404297|ref|YP_006862280.1|	-	2	8.5	4.2	18	5.4	0.1	3.7	4	1	0	4	4	4	0	Protein	serine/threonine	phosphatase	2C,	C-terminal	domain
Proteasome	PF00227.21	gi|408404298|ref|YP_006862281.1|	-	8.7e-51	171.9	0.1	1e-50	171.6	0.1	1.0	1	0	0	1	1	1	1	Proteasome	subunit
PUA	PF01472.15	gi|408404299|ref|YP_006862282.1|	-	6.4e-19	67.4	0.8	1.2e-18	66.5	0.4	1.7	2	0	0	2	2	2	1	PUA	domain
GCV_H	PF01597.14	gi|408404299|ref|YP_006862282.1|	-	0.016	14.8	0.2	0.031	13.9	0.1	1.4	1	0	0	1	1	1	0	Glycine	cleavage	H-protein
AIM24	PF01987.12	gi|408404300|ref|YP_006862283.1|	-	4.6e-30	104.6	0.2	5e-30	104.5	0.1	1.0	1	0	0	1	1	1	1	Mitochondrial	biogenesis	AIM24
Gin	PF10764.4	gi|408404301|ref|YP_006862284.1|	-	0.011	15.4	0.9	0.32	10.7	0.1	2.1	1	1	1	2	2	2	0	Inhibitor	of	sigma-G	Gin
zf-FPG_IleRS	PF06827.9	gi|408404301|ref|YP_006862284.1|	-	0.016	14.8	0.7	1.1	9.0	0.0	2.2	2	0	0	2	2	2	0	Zinc	finger	found	in	FPG	and	IleRS
Zn_Tnp_IS1595	PF12760.2	gi|408404301|ref|YP_006862284.1|	-	0.07	12.9	0.4	0.096	12.5	0.3	1.3	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
DUF4428	PF14471.1	gi|408404301|ref|YP_006862284.1|	-	0.2	11.4	0.9	0.38	10.5	0.6	1.7	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4428)
zf-B_box	PF00643.19	gi|408404301|ref|YP_006862284.1|	-	0.6	10.0	3.5	5.8	6.9	2.4	2.0	1	1	0	1	1	1	0	B-box	zinc	finger
Homoserine_dh	PF00742.14	gi|408404302|ref|YP_006862285.1|	-	1.4e-57	194.2	0.4	2.2e-57	193.6	0.3	1.3	1	0	0	1	1	1	1	Homoserine	dehydrogenase
NAD_binding_3	PF03447.11	gi|408404302|ref|YP_006862285.1|	-	1.8e-07	31.5	0.0	1.5e-06	28.5	0.0	2.4	2	1	0	2	2	2	1	Homoserine	dehydrogenase,	NAD	binding	domain
ELFV_dehydrog	PF00208.16	gi|408404302|ref|YP_006862285.1|	-	6.5e-05	22.6	0.1	0.00017	21.2	0.1	1.7	1	1	0	1	1	1	1	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
GFO_IDH_MocA	PF01408.17	gi|408404302|ref|YP_006862285.1|	-	0.006	17.0	0.0	0.013	16.0	0.0	1.5	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
Pyr_redox	PF00070.22	gi|408404302|ref|YP_006862285.1|	-	0.24	11.8	2.1	50	4.4	0.0	3.7	4	0	0	4	4	4	0	Pyridine	nucleotide-disulphide	oxidoreductase
HTH_AsnC-type	PF13404.1	gi|408404303|ref|YP_006862286.1|	-	7.7e-11	41.3	1.6	1.6e-10	40.3	1.1	1.6	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_24	PF13412.1	gi|408404303|ref|YP_006862286.1|	-	1.8e-10	40.0	0.6	3.1e-10	39.2	0.4	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
AsnC_trans_reg	PF01037.16	gi|408404303|ref|YP_006862286.1|	-	8.8e-10	38.1	0.0	1.4e-09	37.5	0.0	1.3	1	0	0	1	1	1	1	AsnC	family
HTH_11	PF08279.7	gi|408404303|ref|YP_006862286.1|	-	8.1e-06	25.3	0.3	1.7e-05	24.3	0.2	1.5	1	0	0	1	1	1	1	HTH	domain
HTH_Mga	PF08280.6	gi|408404303|ref|YP_006862286.1|	-	0.0031	17.2	0.0	0.0051	16.5	0.0	1.4	1	0	0	1	1	1	1	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
HTH_DeoR	PF08220.7	gi|408404303|ref|YP_006862286.1|	-	0.0065	15.9	0.5	0.016	14.7	0.4	1.6	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
HTH_20	PF12840.2	gi|408404303|ref|YP_006862286.1|	-	0.011	15.4	0.1	0.023	14.4	0.1	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
HrcA_DNA-bdg	PF03444.10	gi|408404303|ref|YP_006862286.1|	-	0.014	14.8	0.5	0.037	13.4	0.1	1.9	2	0	0	2	2	2	0	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
PaaX	PF07848.7	gi|408404303|ref|YP_006862286.1|	-	0.058	13.3	0.2	0.12	12.4	0.2	1.4	1	0	0	1	1	1	0	PaaX-like	protein
Stk19	PF10494.4	gi|408404303|ref|YP_006862286.1|	-	0.084	12.2	0.1	0.097	12.0	0.1	1.2	1	0	0	1	1	1	0	Serine-threonine	protein	kinase	19
HTH_23	PF13384.1	gi|408404303|ref|YP_006862286.1|	-	0.092	12.4	0.2	0.29	10.8	0.0	1.9	2	0	0	2	2	2	0	Homeodomain-like	domain
Phage_integrase	PF00589.17	gi|408404304|ref|YP_006862287.1|	-	3.4e-07	30.0	0.3	0.014	15.1	0.0	2.8	3	0	0	3	3	3	2	Phage	integrase	family
Phage_int_SAM_4	PF13495.1	gi|408404304|ref|YP_006862287.1|	-	1.6e-06	28.3	0.6	1.3e-05	25.3	0.2	2.5	2	0	0	2	2	2	1	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_1	PF02899.12	gi|408404304|ref|YP_006862287.1|	-	9.7e-05	22.4	0.0	0.00088	19.3	0.0	2.6	3	0	0	3	3	3	1	Phage	integrase,	N-terminal	SAM-like	domain
Clenterotox	PF03505.9	gi|408404305|ref|YP_006862288.1|	-	0.11	11.8	0.0	0.2	11.0	0.0	1.4	1	0	0	1	1	1	0	Clostridium	enterotoxin
Antitoxin-MazE	PF04014.13	gi|408404306|ref|YP_006862289.1|	-	0.00036	20.1	0.0	0.00046	19.8	0.0	1.2	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE
THP2	PF09432.5	gi|408404307|ref|YP_006862290.1|	-	0.00098	18.9	0.9	0.0011	18.7	0.7	1.1	1	0	0	1	1	1	1	Tho	complex	subunit	THP2
WWE	PF02825.15	gi|408404307|ref|YP_006862290.1|	-	0.0067	15.8	0.5	0.061	12.7	0.0	2.0	1	1	1	2	2	2	1	WWE	domain
Cortex-I_coil	PF09304.5	gi|408404307|ref|YP_006862290.1|	-	0.0097	15.9	1.1	0.012	15.6	0.8	1.2	1	0	0	1	1	1	1	Cortexillin	I,	coiled	coil
Dak2	PF02734.12	gi|408404307|ref|YP_006862290.1|	-	0.026	14.1	0.1	0.028	14.0	0.1	1.1	1	0	0	1	1	1	0	DAK2	domain
Spc42p	PF11544.3	gi|408404307|ref|YP_006862290.1|	-	0.035	14.0	1.6	3.1	7.7	0.0	2.3	2	1	0	2	2	2	0	Spindle	pole	body	component	Spc42p
DASH_Spc19	PF08287.6	gi|408404307|ref|YP_006862290.1|	-	0.041	13.4	1.6	0.045	13.3	1.1	1.1	1	0	0	1	1	1	0	Spc19
Flagellar_rod	PF05149.7	gi|408404307|ref|YP_006862290.1|	-	0.056	12.6	1.3	0.085	12.0	0.2	1.6	1	1	0	1	1	1	0	Paraflagellar	rod	protein
Val_tRNA-synt_C	PF10458.4	gi|408404307|ref|YP_006862290.1|	-	0.08	13.0	2.2	0.24	11.5	0.1	2.4	2	1	0	2	2	2	0	Valyl	tRNA	synthetase	tRNA	binding	arm
DUF2508	PF10704.4	gi|408404307|ref|YP_006862290.1|	-	0.15	12.2	1.3	6.4	7.0	0.1	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2508)
LsmAD	PF06741.8	gi|408404307|ref|YP_006862290.1|	-	0.16	12.1	0.7	0.18	11.9	0.5	1.3	1	1	0	1	1	1	0	LsmAD	domain
DUF4164	PF13747.1	gi|408404307|ref|YP_006862290.1|	-	0.35	11.0	3.5	0.44	10.6	2.3	1.3	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4164)
MCM	PF00493.18	gi|408404309|ref|YP_006862292.1|	-	7.6e-18	64.3	0.1	1.7e-17	63.2	0.1	1.6	1	0	0	1	1	1	1	MCM2/3/5	family
VacJ	PF04333.8	gi|408404309|ref|YP_006862292.1|	-	0.047	13.1	0.0	0.1	12.0	0.0	1.6	1	0	0	1	1	1	0	VacJ	like	lipoprotein
Antitoxin-MazE	PF04014.13	gi|408404311|ref|YP_006862294.1|	-	0.015	14.9	0.1	0.02	14.6	0.1	1.2	1	0	0	1	1	1	0	Antidote-toxin	recognition	MazE
SpoA	PF01052.15	gi|408404311|ref|YP_006862294.1|	-	0.02	14.4	0.0	0.026	14.1	0.0	1.2	1	0	0	1	1	1	0	Surface	presentation	of	antigens	(SPOA)
hSH3	PF14603.1	gi|408404311|ref|YP_006862294.1|	-	0.067	13.1	0.0	0.08	12.9	0.0	1.1	1	0	0	1	1	1	0	Helically-extended	SH3	domain
ProRS-C_1	PF09180.6	gi|408404312|ref|YP_006862295.1|	-	0.048	13.5	0.1	0.068	13.0	0.1	1.3	1	1	0	1	1	1	0	Prolyl-tRNA	synthetase,	C-terminal
E7	PF00527.13	gi|408404312|ref|YP_006862295.1|	-	0.053	13.6	0.3	0.078	13.1	0.0	1.4	2	0	0	2	2	2	0	E7	protein,	Early	protein
Evr1_Alr	PF04777.8	gi|408404312|ref|YP_006862295.1|	-	0.14	12.0	0.7	0.21	11.5	0.5	1.4	1	1	0	1	1	1	0	Erv1	/	Alr	family
PyrI_C	PF02748.10	gi|408404312|ref|YP_006862295.1|	-	0.17	11.3	1.4	0.41	10.1	0.3	1.9	1	1	1	2	2	2	0	Aspartate	carbamoyltransferase	regulatory	chain,	metal	binding	domain
Antitoxin-MazE	PF04014.13	gi|408404313|ref|YP_006862296.1|	-	5.4e-09	35.5	0.2	6.2e-09	35.3	0.1	1.1	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE
SpoA	PF01052.15	gi|408404313|ref|YP_006862296.1|	-	0.025	14.1	0.0	0.65	9.6	0.0	2.1	1	1	1	2	2	2	0	Surface	presentation	of	antigens	(SPOA)
CusF_Ec	PF11604.3	gi|408404313|ref|YP_006862296.1|	-	0.084	12.7	0.0	0.11	12.3	0.0	1.2	1	0	0	1	1	1	0	Copper	binding	periplasmic	protein	CusF
PP_kinase	PF02503.12	gi|408404314|ref|YP_006862297.1|	-	0.00068	19.2	0.0	0.001	18.5	0.0	1.2	1	0	0	1	1	1	1	Polyphosphate	kinase	middle	domain
IPPT	PF01715.12	gi|408404314|ref|YP_006862297.1|	-	0.036	13.0	0.0	0.064	12.2	0.0	1.3	1	0	0	1	1	1	0	IPP	transferase
DUF1056	PF06341.6	gi|408404316|ref|YP_006862299.1|	-	0.0039	17.1	2.1	0.0057	16.6	1.5	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1056)
DUF2207	PF09972.4	gi|408404316|ref|YP_006862299.1|	-	0.013	14.0	0.5	0.015	13.8	0.3	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
Glt_symporter	PF03616.9	gi|408404316|ref|YP_006862299.1|	-	0.033	12.6	0.1	0.036	12.5	0.1	1.0	1	0	0	1	1	1	0	Sodium/glutamate	symporter
VanZ	PF04892.7	gi|408404316|ref|YP_006862299.1|	-	0.044	13.7	0.3	0.054	13.4	0.2	1.2	1	0	0	1	1	1	0	VanZ	like	family
PMT	PF02366.13	gi|408404316|ref|YP_006862299.1|	-	0.12	11.7	3.5	0.25	10.6	2.4	1.6	1	1	0	1	1	1	0	Dolichyl-phosphate-mannose-protein	mannosyltransferase
PMP1_2	PF08114.6	gi|408404316|ref|YP_006862299.1|	-	3.2	7.3	9.2	0.34	10.4	1.9	2.4	1	1	1	2	2	2	0	ATPase	proteolipid	family
Y_phosphatase	PF00102.22	gi|408404317|ref|YP_006862300.1|	-	0.014	14.7	0.2	0.02	14.2	0.2	1.2	1	0	0	1	1	1	0	Protein-tyrosine	phosphatase
SAC3	PF12209.3	gi|408404317|ref|YP_006862300.1|	-	0.17	12.0	1.2	18	5.5	0.2	2.5	2	0	0	2	2	2	0	Leucine	permease	transcriptional	regulator	helical	domain
TF_Zn_Ribbon	PF08271.7	gi|408404318|ref|YP_006862301.1|	-	0.0035	16.6	0.9	0.0065	15.7	0.6	1.4	1	0	0	1	1	1	1	TFIIB	zinc-binding
HTH_22	PF13309.1	gi|408404319|ref|YP_006862302.1|	-	0.052	13.3	0.0	0.19	11.5	0.0	2.0	2	0	0	2	2	2	0	HTH	domain
DUF4443	PF14544.1	gi|408404319|ref|YP_006862302.1|	-	0.12	12.2	0.0	0.2	11.5	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4443)
DNA_processg_A	PF02481.10	gi|408404321|ref|YP_006862304.1|	-	1.8e-57	193.6	0.0	2.1e-57	193.4	0.0	1.0	1	0	0	1	1	1	1	DNA	recombination-mediator	protein	A
Pribosyltran	PF00156.22	gi|408404322|ref|YP_006862305.1|	-	0.0003	20.5	0.0	0.00052	19.7	0.0	1.5	2	0	0	2	2	2	1	Phosphoribosyl	transferase	domain
PRTase_2	PF15609.1	gi|408404322|ref|YP_006862305.1|	-	0.00084	18.6	0.0	0.0011	18.2	0.0	1.2	1	0	0	1	1	1	1	Phosphoribosyl	transferase
Antitoxin-MazE	PF04014.13	gi|408404323|ref|YP_006862306.1|	-	0.00034	20.2	0.2	0.00062	19.4	0.1	1.6	1	1	0	1	1	1	1	Antidote-toxin	recognition	MazE
TauE	PF01925.14	gi|408404324|ref|YP_006862307.1|	-	5.9e-51	173.2	34.3	7.2e-51	172.9	23.7	1.0	1	0	0	1	1	1	1	Sulfite	exporter	TauE/SafE
Ceramidase	PF05875.7	gi|408404324|ref|YP_006862307.1|	-	0.12	11.4	0.4	0.23	10.5	0.3	1.4	1	0	0	1	1	1	0	Ceramidase
adh_short	PF00106.20	gi|408404325|ref|YP_006862308.1|	-	8.8e-29	100.5	2.4	9.7e-22	77.6	0.4	3.2	3	1	0	3	3	3	2	short	chain	dehydrogenase
adh_short_C2	PF13561.1	gi|408404325|ref|YP_006862308.1|	-	1.5e-19	70.7	2.9	1.8e-12	47.5	0.0	3.2	3	0	0	3	3	3	2	Enoyl-(Acyl	carrier	protein)	reductase
KR	PF08659.5	gi|408404325|ref|YP_006862308.1|	-	2.7e-16	59.7	3.7	1.9e-12	47.2	0.0	3.8	4	1	0	4	4	4	2	KR	domain
Epimerase	PF01370.16	gi|408404325|ref|YP_006862308.1|	-	2e-06	27.4	2.2	0.022	14.1	0.3	2.9	2	1	0	2	2	2	2	NAD	dependent	epimerase/dehydratase	family
NAD_binding_10	PF13460.1	gi|408404325|ref|YP_006862308.1|	-	0.00055	19.9	1.4	0.95	9.4	0.3	2.9	2	1	0	2	2	2	2	NADH(P)-binding
3HCDH_N	PF02737.13	gi|408404325|ref|YP_006862308.1|	-	0.00066	19.3	0.8	0.00066	19.3	0.5	2.3	2	0	0	2	2	2	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
THF_DHG_CYH_C	PF02882.14	gi|408404325|ref|YP_006862308.1|	-	0.00066	18.7	1.2	0.02	14.0	0.3	2.6	2	1	0	2	2	2	1	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
PDH	PF02153.12	gi|408404325|ref|YP_006862308.1|	-	0.0011	17.9	0.6	0.0073	15.2	0.0	2.5	3	0	0	3	3	3	1	Prephenate	dehydrogenase
2-Hacid_dh_C	PF02826.14	gi|408404325|ref|YP_006862308.1|	-	0.0012	18.0	1.8	0.0054	15.8	0.2	2.5	2	1	1	3	3	3	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Eno-Rase_NADH_b	PF12242.3	gi|408404325|ref|YP_006862308.1|	-	0.0056	16.4	1.2	0.038	13.7	0.1	2.6	2	0	0	2	2	2	1	NAD(P)H	binding	domain	of	trans-2-enoyl-CoA	reductase
Shikimate_DH	PF01488.15	gi|408404325|ref|YP_006862308.1|	-	0.015	15.4	4.4	0.016	15.3	0.5	2.9	3	1	0	3	3	3	0	Shikimate	/	quinate	5-dehydrogenase
ApbA	PF02558.11	gi|408404325|ref|YP_006862308.1|	-	0.021	14.2	0.2	1.1	8.7	0.1	2.4	2	0	0	2	2	2	0	Ketopantoate	reductase	PanE/ApbA
IF-2B	PF01008.12	gi|408404325|ref|YP_006862308.1|	-	0.067	12.1	1.9	0.33	9.9	1.0	2.0	2	0	0	2	2	2	0	Initiation	factor	2	subunit	family
NAD_binding_7	PF13241.1	gi|408404325|ref|YP_006862308.1|	-	0.15	12.3	7.0	0.42	10.8	0.1	3.2	4	0	0	4	4	4	0	Putative	NAD(P)-binding
ISG65-75	PF11727.3	gi|408404325|ref|YP_006862308.1|	-	0.23	10.4	2.2	0.46	9.5	1.5	1.5	1	1	0	1	1	1	0	Invariant	surface	glycoprotein
AIRC	PF00731.15	gi|408404328|ref|YP_006862311.1|	-	3e-67	224.5	1.7	3.5e-67	224.3	1.2	1.0	1	0	0	1	1	1	1	AIR	carboxylase
PrpR_N	PF06506.6	gi|408404328|ref|YP_006862311.1|	-	0.021	14.2	0.1	0.037	13.4	0.1	1.6	1	1	0	1	1	1	0	Propionate	catabolism	activator
ATP-grasp	PF02222.17	gi|408404329|ref|YP_006862312.1|	-	1.3e-58	197.1	0.0	1.9e-58	196.6	0.0	1.2	1	0	0	1	1	1	1	ATP-grasp	domain
ATP-grasp_4	PF13535.1	gi|408404329|ref|YP_006862312.1|	-	5.3e-16	58.8	0.1	8.4e-16	58.2	0.0	1.3	1	0	0	1	1	1	1	ATP-grasp	domain
Dala_Dala_lig_C	PF07478.8	gi|408404329|ref|YP_006862312.1|	-	6.6e-10	38.7	0.0	3.9e-09	36.1	0.0	2.0	1	1	0	1	1	1	1	D-ala	D-ala	ligase	C-terminus
ATPgrasp_Ter	PF15632.1	gi|408404329|ref|YP_006862312.1|	-	5.5e-09	35.2	0.1	4.3e-07	28.9	0.1	2.1	2	0	0	2	2	2	2	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
RimK	PF08443.6	gi|408404329|ref|YP_006862312.1|	-	5.7e-06	25.9	0.0	3e-05	23.5	0.0	2.0	1	1	0	1	1	1	1	RimK-like	ATP-grasp	domain
ATP-grasp_3	PF02655.9	gi|408404329|ref|YP_006862312.1|	-	2.7e-05	24.0	0.0	5.6e-05	23.0	0.0	1.5	2	0	0	2	2	2	1	ATP-grasp	domain
CPSase_L_D2	PF02786.12	gi|408404329|ref|YP_006862312.1|	-	0.00018	20.8	0.0	0.00033	20.0	0.0	1.4	1	0	0	1	1	1	1	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
ATP-grasp_5	PF13549.1	gi|408404329|ref|YP_006862312.1|	-	0.031	13.4	0.0	0.064	12.4	0.0	1.6	1	0	0	1	1	1	0	ATP-grasp	domain
SAICAR_synt	PF01259.13	gi|408404330|ref|YP_006862313.1|	-	1.9e-67	226.9	0.0	2.3e-67	226.7	0.0	1.0	1	0	0	1	1	1	1	SAICAR	synthetase
Usg	PF06233.7	gi|408404330|ref|YP_006862313.1|	-	0.14	12.0	0.0	0.23	11.3	0.0	1.4	1	0	0	1	1	1	0	Usg-like	family
HTH_20	PF12840.2	gi|408404331|ref|YP_006862314.1|	-	9.5e-12	44.5	0.0	1.9e-11	43.6	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.15	gi|408404331|ref|YP_006862314.1|	-	9.7e-09	34.7	1.5	3.4e-08	33.0	0.2	2.4	2	1	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
HTH_12	PF08461.5	gi|408404331|ref|YP_006862314.1|	-	3.3e-06	26.7	0.1	7.5e-06	25.5	0.1	1.6	1	0	0	1	1	1	1	Ribonuclease	R	winged-helix	domain
HTH_11	PF08279.7	gi|408404331|ref|YP_006862314.1|	-	0.00013	21.5	0.7	0.0005	19.6	0.5	2.0	1	1	0	1	1	1	1	HTH	domain
HTH_24	PF13412.1	gi|408404331|ref|YP_006862314.1|	-	0.00014	21.1	0.1	0.00049	19.4	0.1	2.0	1	1	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
PadR	PF03551.9	gi|408404331|ref|YP_006862314.1|	-	0.00074	19.2	0.1	0.0018	18.0	0.1	1.6	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
TrmB	PF01978.14	gi|408404331|ref|YP_006862314.1|	-	0.0012	18.5	0.1	0.016	14.9	0.0	2.4	2	1	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
TFIIE_alpha	PF02002.12	gi|408404331|ref|YP_006862314.1|	-	0.0053	16.2	0.1	0.011	15.2	0.1	1.6	1	1	0	1	1	1	1	TFIIE	alpha	subunit
DUF2088	PF09861.4	gi|408404331|ref|YP_006862314.1|	-	0.011	14.7	0.1	0.2	10.6	0.0	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF2088)
FUR	PF01475.14	gi|408404331|ref|YP_006862314.1|	-	0.018	14.9	0.1	0.03	14.2	0.1	1.5	1	1	0	1	1	1	0	Ferric	uptake	regulator	family
DUF3253	PF11625.3	gi|408404331|ref|YP_006862314.1|	-	0.023	14.5	0.0	0.045	13.6	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3253)
DUF2250	PF10007.4	gi|408404331|ref|YP_006862314.1|	-	0.028	14.3	0.1	0.058	13.3	0.1	1.6	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_34	PF13601.1	gi|408404331|ref|YP_006862314.1|	-	0.041	13.9	0.2	0.11	12.5	0.1	1.8	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
LexA_DNA_bind	PF01726.11	gi|408404331|ref|YP_006862314.1|	-	0.078	12.5	0.7	0.29	10.7	0.1	2.3	3	0	0	3	3	3	0	LexA	DNA	binding	domain
DUF371	PF04027.8	gi|408404332|ref|YP_006862315.1|	-	2.6e-42	143.6	0.3	2.8e-42	143.4	0.2	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF371)
Proteasome	PF00227.21	gi|408404333|ref|YP_006862316.1|	-	8.8e-56	188.1	0.4	1e-55	187.9	0.3	1.1	1	0	0	1	1	1	1	Proteasome	subunit
Redoxin	PF08534.5	gi|408404334|ref|YP_006862317.1|	-	2.8e-07	30.1	0.0	7.1e-05	22.3	0.0	2.3	2	1	0	2	2	2	2	Redoxin
AhpC-TSA	PF00578.16	gi|408404334|ref|YP_006862317.1|	-	2.4e-06	27.2	0.0	2.5e-05	23.9	0.0	2.2	1	1	0	1	1	1	1	AhpC/TSA	family
GSHPx	PF00255.14	gi|408404334|ref|YP_006862317.1|	-	0.0033	16.7	0.0	0.0061	15.9	0.0	1.4	1	0	0	1	1	1	1	Glutathione	peroxidase
Thioredoxin_2	PF13098.1	gi|408404334|ref|YP_006862317.1|	-	0.019	15.1	0.1	0.31	11.2	0.1	2.2	1	1	0	1	1	1	0	Thioredoxin-like	domain
Methyltrn_RNA_3	PF02598.12	gi|408404335|ref|YP_006862318.1|	-	1e-47	162.8	0.0	1.2e-47	162.6	0.0	1.0	1	0	0	1	1	1	1	Putative	RNA	methyltransferase
SPOUT_MTase_2	PF14419.1	gi|408404335|ref|YP_006862318.1|	-	0.012	14.8	0.1	0.023	13.8	0.0	1.5	2	0	0	2	2	2	0	AF2226-like	SPOUT	RNA	Methylase	fused	to	THUMP
Methyltrn_RNA_4	PF09936.4	gi|408404335|ref|YP_006862318.1|	-	0.15	11.5	0.1	1.8	8.0	0.0	2.1	2	0	0	2	2	2	0	SAM-dependent	RNA	methyltransferase
SIMPL	PF04402.9	gi|408404336|ref|YP_006862319.1|	-	9.3e-43	146.5	0.5	1.1e-42	146.3	0.3	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF541)
Ribosomal_L3	PF00297.17	gi|408404337|ref|YP_006862320.1|	-	1.3e-55	188.6	0.9	1.5e-55	188.4	0.6	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L3
Ribosomal_L4	PF00573.17	gi|408404338|ref|YP_006862321.1|	-	6.1e-39	133.3	0.2	7.1e-39	133.1	0.1	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L4/L1	family
Ribosomal_L23	PF00276.15	gi|408404339|ref|YP_006862322.1|	-	4.5e-12	45.7	2.0	9.8e-12	44.6	1.4	1.6	1	1	0	1	1	1	1	Ribosomal	protein	L23
Ribosomal_S19	PF00203.16	gi|408404340|ref|YP_006862323.1|	-	4.8e-27	93.3	0.4	6.3e-27	93.0	0.3	1.2	1	0	0	1	1	1	1	Ribosomal	protein	S19
Ribosomal_L30_N	PF08079.7	gi|408404340|ref|YP_006862323.1|	-	0.0028	17.6	0.3	0.0055	16.7	0.2	1.4	1	0	0	1	1	1	1	Ribosomal	L30	N-terminal	domain
Ribosomal_L22	PF00237.14	gi|408404341|ref|YP_006862324.1|	-	4.3e-31	106.9	0.2	5.1e-31	106.7	0.1	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L22p/L17e
KH_2	PF07650.12	gi|408404342|ref|YP_006862325.1|	-	4.2e-14	51.8	0.0	6.7e-14	51.2	0.0	1.3	1	0	0	1	1	1	1	KH	domain
Ribosomal_S3_C	PF00189.15	gi|408404342|ref|YP_006862325.1|	-	8.5e-13	48.3	0.3	1.6e-12	47.4	0.2	1.4	1	0	0	1	1	1	1	Ribosomal	protein	S3,	C-terminal	domain
KH_3	PF13014.1	gi|408404342|ref|YP_006862325.1|	-	0.12	12.0	0.3	0.32	10.6	0.2	1.8	1	0	0	1	1	1	0	KH	domain
Ribosomal_L29	PF00831.18	gi|408404343|ref|YP_006862326.1|	-	7.7e-17	60.7	5.1	9.2e-17	60.4	3.5	1.1	1	0	0	1	1	1	1	Ribosomal	L29	protein
DUF3259	PF11652.3	gi|408404343|ref|YP_006862326.1|	-	0.017	15.2	0.6	0.024	14.8	0.2	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3259)
Flavi_capsid	PF01003.14	gi|408404343|ref|YP_006862326.1|	-	0.13	11.8	1.7	0.15	11.5	0.9	1.4	1	1	0	1	1	1	0	Flavivirus	capsid	protein	C
Ist1	PF03398.9	gi|408404343|ref|YP_006862326.1|	-	0.47	9.8	2.9	5.9	6.2	0.1	2.0	1	1	1	2	2	2	0	Regulator	of	Vps4	activity	in	the	MVB	pathway
DUF1843	PF08898.5	gi|408404343|ref|YP_006862326.1|	-	1	9.4	6.8	0.8	9.7	1.6	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1843)
UPF0086	PF01868.11	gi|408404344|ref|YP_006862327.1|	-	2.3e-18	65.5	0.1	2.7e-18	65.4	0.1	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	UPF0086
Ribosomal_S17	PF00366.15	gi|408404345|ref|YP_006862328.1|	-	9.5e-21	73.6	0.4	1.2e-20	73.3	0.3	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S17
Ribosomal_L14	PF00238.14	gi|408404346|ref|YP_006862329.1|	-	2.8e-32	111.0	0.1	3.2e-32	110.8	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L14p/L23e
KOW	PF00467.24	gi|408404347|ref|YP_006862330.1|	-	2.5e-07	30.1	2.5	2.5e-07	30.1	1.7	2.0	2	0	0	2	2	2	1	KOW	motif
Ribosomal_S4e	PF00900.15	gi|408404348|ref|YP_006862331.1|	-	7.6e-21	73.5	0.5	1.7e-20	72.4	0.3	1.6	1	0	0	1	1	1	1	Ribosomal	family	S4e
RS4NT	PF08071.7	gi|408404348|ref|YP_006862331.1|	-	6.5e-11	41.9	2.1	1e-10	41.2	1.5	1.3	1	0	0	1	1	1	1	RS4NT	(NUC023)	domain
S4	PF01479.20	gi|408404348|ref|YP_006862331.1|	-	1e-08	34.4	0.2	2.9e-08	33.0	0.1	1.8	2	0	0	2	2	2	1	S4	domain
KOW	PF00467.24	gi|408404348|ref|YP_006862331.1|	-	0.01	15.5	0.9	0.047	13.4	0.1	2.6	2	0	0	2	2	2	0	KOW	motif
TraA	PF05513.6	gi|408404348|ref|YP_006862331.1|	-	0.013	15.7	0.0	0.021	15.0	0.0	1.4	1	0	0	1	1	1	0	TraA
S4_2	PF13275.1	gi|408404348|ref|YP_006862331.1|	-	0.16	11.5	2.1	0.59	9.7	0.1	2.8	3	0	0	3	3	3	0	S4	domain
Ribosomal_L5_C	PF00673.16	gi|408404349|ref|YP_006862332.1|	-	1.1e-24	85.9	0.0	1.8e-24	85.3	0.0	1.3	1	0	0	1	1	1	1	ribosomal	L5P	family	C-terminus
Ribosomal_L5	PF00281.14	gi|408404349|ref|YP_006862332.1|	-	2.2e-15	56.1	0.1	4.5e-15	55.1	0.1	1.5	1	0	0	1	1	1	1	Ribosomal	protein	L5
Ribosomal_S14	PF00253.16	gi|408404350|ref|YP_006862333.1|	-	5.8e-16	57.6	2.9	7.1e-16	57.3	2.0	1.2	1	0	0	1	1	1	1	Ribosomal	protein	S14p/S29e
zf-P11	PF03854.9	gi|408404350|ref|YP_006862333.1|	-	0.062	12.7	1.4	0.078	12.4	1.0	1.2	1	0	0	1	1	1	0	P-11	zinc	finger
DZR	PF12773.2	gi|408404350|ref|YP_006862333.1|	-	0.11	12.3	0.6	0.19	11.6	0.4	1.4	1	1	0	1	1	1	0	Double	zinc	ribbon
zf-FPG_IleRS	PF06827.9	gi|408404350|ref|YP_006862333.1|	-	0.13	11.9	2.5	0.93	9.2	0.1	2.1	2	0	0	2	2	2	0	Zinc	finger	found	in	FPG	and	IleRS
Prim_Zn_Ribbon	PF08273.7	gi|408404350|ref|YP_006862333.1|	-	0.3	11.1	3.2	0.76	9.8	0.5	2.1	2	0	0	2	2	2	0	Zinc-binding	domain	of	primase-helicase
zf-tcix	PF14952.1	gi|408404350|ref|YP_006862333.1|	-	0.54	9.6	4.4	0.89	8.9	3.1	1.5	1	1	0	1	1	1	0	Putative	treble-clef,	zinc-finger,	Zn-binding
Ribosomal_S8	PF00410.14	gi|408404351|ref|YP_006862334.1|	-	3e-22	78.8	0.0	4.1e-22	78.3	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	protein	S8
Ribosomal_L6	PF00347.18	gi|408404352|ref|YP_006862335.1|	-	1.2e-16	60.9	8.6	1e-09	38.7	1.4	2.1	2	0	0	2	2	2	2	Ribosomal	protein	L6
TrmB	PF01978.14	gi|408404353|ref|YP_006862336.1|	-	0.0075	15.9	0.5	0.012	15.2	0.3	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_20	PF12840.2	gi|408404353|ref|YP_006862336.1|	-	0.012	15.3	0.0	0.029	14.1	0.0	1.6	2	0	0	2	2	2	0	Helix-turn-helix	domain
LexA_DNA_bind	PF01726.11	gi|408404353|ref|YP_006862336.1|	-	0.036	13.6	0.0	0.06	12.9	0.0	1.3	1	0	0	1	1	1	0	LexA	DNA	binding	domain
DUF3107	PF11305.3	gi|408404353|ref|YP_006862336.1|	-	0.077	12.8	0.4	0.24	11.3	0.1	1.9	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3107)
DUF35_N	PF12172.3	gi|408404355|ref|YP_006862338.1|	-	7.9e-07	28.8	0.4	1.6e-06	27.8	0.3	1.4	1	0	0	1	1	1	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
zf-C3HC4_3	PF13920.1	gi|408404355|ref|YP_006862338.1|	-	0.042	13.5	1.5	0.077	12.6	1.1	1.3	1	0	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
DZR	PF12773.2	gi|408404355|ref|YP_006862338.1|	-	0.045	13.5	1.3	0.047	13.5	0.3	1.4	2	0	0	2	2	2	0	Double	zinc	ribbon
Zn_Tnp_IS1595	PF12760.2	gi|408404355|ref|YP_006862338.1|	-	0.18	11.6	0.2	0.18	11.6	0.2	2.3	2	1	1	3	3	3	0	Transposase	zinc-ribbon	domain
Thiolase_C	PF02803.13	gi|408404356|ref|YP_006862339.1|	-	5.1e-11	42.0	1.0	1.6e-10	40.4	0.7	1.9	1	0	0	1	1	1	1	Thiolase,	C-terminal	domain
ACP_syn_III	PF08545.5	gi|408404356|ref|YP_006862339.1|	-	1.6e-05	24.4	0.1	0.001	18.6	0.0	2.5	2	0	0	2	2	2	1	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III
Thiolase_N	PF00108.18	gi|408404356|ref|YP_006862339.1|	-	4.7e-05	22.5	0.8	0.00053	19.0	0.1	2.3	2	1	0	2	2	2	1	Thiolase,	N-terminal	domain
ketoacyl-synt	PF00109.21	gi|408404356|ref|YP_006862339.1|	-	0.014	14.8	0.1	0.034	13.6	0.1	1.6	1	0	0	1	1	1	0	Beta-ketoacyl	synthase,	N-terminal	domain
Peptidase_M20	PF01546.23	gi|408404356|ref|YP_006862339.1|	-	0.11	11.9	0.3	0.5	9.8	0.1	1.9	1	1	0	2	2	2	0	Peptidase	family	M20/M25/M40
Ketoacyl-synt_C	PF02801.17	gi|408404356|ref|YP_006862339.1|	-	0.88	9.4	6.3	0.76	9.6	0.1	3.0	2	1	0	2	2	2	0	Beta-ketoacyl	synthase,	C-terminal	domain
Bac_luciferase	PF00296.15	gi|408404357|ref|YP_006862340.1|	-	3.5e-60	203.7	0.0	4.2e-60	203.4	0.0	1.0	1	0	0	1	1	1	1	Luciferase-like	monooxygenase
EFG_C	PF00679.19	gi|408404357|ref|YP_006862340.1|	-	0.068	13.0	0.0	4.1	7.3	0.0	2.8	3	0	0	3	3	3	0	Elongation	factor	G	C-terminus
NTP_transferase	PF00483.18	gi|408404358|ref|YP_006862341.1|	-	1.6e-33	116.0	0.0	3.9e-33	114.7	0.0	1.6	1	1	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.2	gi|408404358|ref|YP_006862341.1|	-	2e-09	37.7	0.0	3e-09	37.1	0.0	1.2	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
IspD	PF01128.14	gi|408404358|ref|YP_006862341.1|	-	0.017	14.6	0.0	0.026	14.0	0.0	1.2	1	0	0	1	1	1	0	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
DUF2182	PF09948.4	gi|408404359|ref|YP_006862342.1|	-	0.032	14.1	0.5	0.043	13.7	0.4	1.2	1	0	0	1	1	1	0	Predicted	metal-binding	integral	membrane	protein	(DUF2182)
SAM_MT	PF04445.8	gi|408404359|ref|YP_006862342.1|	-	0.089	11.9	0.2	0.11	11.6	0.2	1.1	1	0	0	1	1	1	0	Putative	SAM-dependent	methyltransferase
DUF2975	PF11188.3	gi|408404359|ref|YP_006862342.1|	-	0.15	11.7	4.7	0.41	10.3	0.6	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2975)
Tetraspannin	PF00335.15	gi|408404359|ref|YP_006862342.1|	-	0.74	9.0	9.7	0.54	9.5	3.4	2.2	1	1	0	2	2	2	0	Tetraspanin	family
DUF2157	PF09925.4	gi|408404359|ref|YP_006862342.1|	-	3.4	7.2	12.0	0.52	9.9	4.6	2.2	2	1	0	2	2	2	0	Predicted	membrane	protein	(DUF2157)
AAA_26	PF13500.1	gi|408404361|ref|YP_006862344.1|	-	9.9e-46	155.8	0.0	1.1e-45	155.6	0.0	1.0	1	0	0	1	1	1	1	AAA	domain
CbiA	PF01656.18	gi|408404361|ref|YP_006862344.1|	-	1.7e-11	43.9	0.0	2.5e-11	43.3	0.0	1.2	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ArsA_ATPase	PF02374.10	gi|408404361|ref|YP_006862344.1|	-	0.0013	17.8	0.5	0.062	12.3	0.1	2.2	2	0	0	2	2	2	2	Anion-transporting	ATPase
ParA	PF10609.4	gi|408404361|ref|YP_006862344.1|	-	0.017	14.9	0.5	0.055	13.3	0.3	1.9	1	1	0	1	1	1	0	ParA/MinD	ATPase	like
YhjQ	PF06564.7	gi|408404361|ref|YP_006862344.1|	-	0.14	11.4	0.0	0.18	11.1	0.0	1.2	1	0	0	1	1	1	0	YhjQ	protein
DUF1611	PF07755.6	gi|408404361|ref|YP_006862344.1|	-	0.18	10.4	0.8	5.8	5.4	0.2	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1611)
Aminotran_3	PF00202.16	gi|408404362|ref|YP_006862345.1|	-	3.6e-89	298.9	0.0	4.2e-89	298.7	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class-III
Beta_elim_lyase	PF01212.16	gi|408404362|ref|YP_006862345.1|	-	0.013	14.7	0.0	0.028	13.5	0.0	1.6	1	1	0	1	1	1	0	Beta-eliminating	lyase
FAD_binding_2	PF00890.19	gi|408404362|ref|YP_006862345.1|	-	0.018	13.8	0.0	0.035	12.9	0.0	1.4	1	0	0	1	1	1	0	FAD	binding	domain
SIS_2	PF13580.1	gi|408404362|ref|YP_006862345.1|	-	0.081	12.6	0.0	0.97	9.1	0.0	2.3	2	0	0	2	2	2	0	SIS	domain
Resolvase	PF00239.16	gi|408404363|ref|YP_006862346.1|	-	3.2e-34	117.7	0.1	5e-34	117.1	0.1	1.3	1	0	0	1	1	1	1	Resolvase,	N	terminal	domain
HTH_7	PF02796.10	gi|408404363|ref|YP_006862346.1|	-	1.9e-08	34.0	0.1	4.3e-08	32.8	0.1	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	resolvase
HTH_23	PF13384.1	gi|408404363|ref|YP_006862346.1|	-	7.2e-06	25.4	0.6	1.6e-05	24.4	0.0	1.9	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_38	PF13936.1	gi|408404363|ref|YP_006862346.1|	-	5.7e-05	22.5	0.0	0.00014	21.3	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
CENP-B_N	PF04218.8	gi|408404363|ref|YP_006862346.1|	-	0.00023	20.4	0.2	0.00082	18.7	0.0	2.0	3	0	0	3	3	3	1	CENP-B	N-terminal	DNA-binding	domain
HTH_28	PF13518.1	gi|408404363|ref|YP_006862346.1|	-	0.001	18.9	0.0	0.0025	17.7	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_22	PF13309.1	gi|408404363|ref|YP_006862346.1|	-	0.0025	17.5	0.1	0.014	15.0	0.0	2.2	2	0	0	2	2	2	1	HTH	domain
HTH_11	PF08279.7	gi|408404363|ref|YP_006862346.1|	-	0.0034	16.9	0.3	0.008	15.8	0.2	1.7	1	0	0	1	1	1	1	HTH	domain
HTH_30	PF13556.1	gi|408404363|ref|YP_006862346.1|	-	0.026	14.0	0.2	0.046	13.3	0.1	1.4	1	0	0	1	1	1	0	PucR	C-terminal	helix-turn-helix	domain
HTH_10	PF04967.7	gi|408404363|ref|YP_006862346.1|	-	0.027	14.0	0.1	0.06	12.9	0.0	1.5	1	0	0	1	1	1	0	HTH	DNA	binding	domain
HTH_29	PF13551.1	gi|408404363|ref|YP_006862346.1|	-	0.045	13.9	0.2	0.34	11.0	0.0	2.5	2	1	1	3	3	3	0	Winged	helix-turn	helix
TetR_N	PF00440.18	gi|408404363|ref|YP_006862346.1|	-	0.049	13.2	0.0	0.14	11.8	0.0	1.8	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	tetR	family
Trp_repressor	PF01371.14	gi|408404363|ref|YP_006862346.1|	-	0.061	13.2	0.5	0.18	11.7	0.0	2.0	2	0	0	2	2	2	0	Trp	repressor	protein
HTH_8	PF02954.14	gi|408404363|ref|YP_006862346.1|	-	0.072	12.6	0.2	0.072	12.6	0.1	1.9	2	0	0	2	2	2	0	Bacterial	regulatory	protein,	Fis	family
TrmB	PF01978.14	gi|408404363|ref|YP_006862346.1|	-	0.087	12.5	0.1	0.15	11.7	0.1	1.4	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
BATS	PF06968.8	gi|408404364|ref|YP_006862347.1|	-	1.7e-25	88.6	0.0	4.8e-25	87.2	0.0	1.8	1	0	0	1	1	1	1	Biotin	and	Thiamin	Synthesis	associated	domain
Radical_SAM	PF04055.16	gi|408404364|ref|YP_006862347.1|	-	8.9e-16	58.5	0.2	1.9e-15	57.4	0.1	1.5	1	0	0	1	1	1	1	Radical	SAM	superfamily
DeoC	PF01791.4	gi|408404364|ref|YP_006862347.1|	-	0.026	13.8	0.1	2.6	7.2	0.0	2.8	3	0	0	3	3	3	0	DeoC/LacD	family	aldolase
His_biosynth	PF00977.16	gi|408404364|ref|YP_006862347.1|	-	0.046	12.9	0.0	0.1	11.8	0.0	1.6	1	0	0	1	1	1	0	Histidine	biosynthesis	protein
DUF849	PF05853.7	gi|408404364|ref|YP_006862347.1|	-	0.08	11.8	0.0	0.11	11.3	0.0	1.3	1	0	0	1	1	1	0	Prokaryotic	protein	of	unknown	function	(DUF849)
Aminotran_1_2	PF00155.16	gi|408404365|ref|YP_006862348.1|	-	8.5e-64	215.7	0.0	9.7e-64	215.5	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Aminotran_5	PF00266.14	gi|408404365|ref|YP_006862348.1|	-	1.7e-06	27.0	0.1	3.1e-06	26.1	0.1	1.4	1	0	0	1	1	1	1	Aminotransferase	class-V
Cys_Met_Meta_PP	PF01053.15	gi|408404365|ref|YP_006862348.1|	-	7e-05	21.2	0.0	0.0001	20.7	0.0	1.2	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Beta_elim_lyase	PF01212.16	gi|408404365|ref|YP_006862348.1|	-	0.014	14.5	0.0	0.042	12.9	0.0	1.5	1	1	0	1	1	1	0	Beta-eliminating	lyase
Microvir_H	PF04687.7	gi|408404367|ref|YP_006862350.1|	-	0.016	14.3	0.3	0.023	13.7	0.2	1.2	1	0	0	1	1	1	0	Microvirus	H	protein	(pilot	protein)
DASH_Duo1	PF08651.5	gi|408404367|ref|YP_006862350.1|	-	0.27	10.8	1.8	0.47	10.0	0.2	2.1	2	0	0	2	2	2	0	DASH	complex	subunit	Duo1
Snf7	PF03357.16	gi|408404367|ref|YP_006862350.1|	-	0.34	10.2	7.0	0.79	9.0	4.8	1.7	1	1	0	1	1	1	0	Snf7
Ehrlichia_rpt	PF09528.5	gi|408404368|ref|YP_006862351.1|	-	0.025	12.7	0.0	0.025	12.7	0.0	1.1	1	0	0	1	1	1	0	Ehrlichia	tandem	repeat	(Ehrlichia_rpt)
OprD	PF03573.8	gi|408404368|ref|YP_006862351.1|	-	0.036	12.8	0.1	0.036	12.8	0.1	1.0	1	0	0	1	1	1	0	outer	membrane	porin,	OprD	family
Snf7	PF03357.16	gi|408404368|ref|YP_006862351.1|	-	0.037	13.3	2.6	0.041	13.2	1.0	1.7	1	1	1	2	2	2	0	Snf7
EST1_DNA_bind	PF10373.4	gi|408404368|ref|YP_006862351.1|	-	0.049	12.8	0.2	0.05	12.8	0.1	1.0	1	0	0	1	1	1	0	Est1	DNA/RNA	binding	domain
NOSIC	PF08060.8	gi|408404368|ref|YP_006862351.1|	-	0.076	12.8	0.0	0.16	11.7	0.0	1.6	1	1	0	1	1	1	0	NOSIC	(NUC001)	domain
PALP	PF00291.20	gi|408404369|ref|YP_006862352.1|	-	7e-45	153.5	0.0	9.2e-45	153.1	0.0	1.1	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
PK_C	PF02887.11	gi|408404369|ref|YP_006862352.1|	-	0.049	13.1	0.8	0.91	9.0	0.2	2.4	2	0	0	2	2	2	0	Pyruvate	kinase,	alpha/beta	domain
Chorismate_bind	PF00425.13	gi|408404370|ref|YP_006862353.1|	-	1.4e-92	309.6	0.0	8.1e-92	307.1	0.0	2.0	2	0	0	2	2	2	1	chorismate	binding	enzyme
Anth_synt_I_N	PF04715.8	gi|408404370|ref|YP_006862353.1|	-	2.4e-22	79.4	0.0	3.5e-21	75.6	0.0	2.3	2	0	0	2	2	2	1	Anthranilate	synthase	component	I,	N	terminal	region
ILVD_EDD	PF00920.16	gi|408404371|ref|YP_006862354.1|	-	4.9e-221	734.6	7.5	5.5e-221	734.4	5.2	1.0	1	0	0	1	1	1	1	Dehydratase	family
Elf1	PF05129.8	gi|408404372|ref|YP_006862355.1|	-	0.0024	17.5	0.2	0.0027	17.3	0.1	1.1	1	0	0	1	1	1	1	Transcription	elongation	factor	Elf1	like
zinc_ribbon_5	PF13719.1	gi|408404372|ref|YP_006862355.1|	-	0.033	13.7	0.2	8.1	6.1	0.0	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
Rubredoxin	PF00301.15	gi|408404372|ref|YP_006862355.1|	-	0.043	13.6	0.1	2.6	7.9	0.0	2.1	2	0	0	2	2	2	0	Rubredoxin
Mu-like_Com	PF10122.4	gi|408404372|ref|YP_006862355.1|	-	0.08	12.0	0.2	0.81	8.7	0.1	2.0	1	1	1	2	2	2	0	Mu-like	prophage	protein	Com
zinc_ribbon_4	PF13717.1	gi|408404372|ref|YP_006862355.1|	-	0.097	12.3	0.2	9.2	6.0	0.0	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
HypA	PF01155.14	gi|408404372|ref|YP_006862355.1|	-	0.1	12.2	0.1	0.14	11.8	0.1	1.2	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
Zn-ribbon_8	PF09723.5	gi|408404372|ref|YP_006862355.1|	-	0.32	10.9	2.1	0.54	10.2	1.5	1.4	1	1	0	1	1	1	0	Zinc	ribbon	domain
HIT	PF01230.18	gi|408404373|ref|YP_006862356.1|	-	2.1e-23	82.7	0.3	3e-23	82.1	0.2	1.2	1	0	0	1	1	1	1	HIT	domain
DcpS_C	PF11969.3	gi|408404373|ref|YP_006862356.1|	-	1.4e-16	60.7	0.0	1.9e-16	60.3	0.0	1.1	1	0	0	1	1	1	1	Scavenger	mRNA	decapping	enzyme	C-term	binding
CwfJ_C_1	PF04677.10	gi|408404373|ref|YP_006862356.1|	-	0.0053	16.3	0.4	0.011	15.4	0.3	1.5	1	1	0	1	1	1	1	Protein	similar	to	CwfJ	C-terminus	1
Integrase_AP2	PF14657.1	gi|408404375|ref|YP_006862358.1|	-	5.8	6.7	6.3	0.38	10.5	0.3	2.0	2	0	0	2	2	2	0	AP2-like	DNA-binding	integrase	domain
tRNA_int_endo	PF01974.12	gi|408404377|ref|YP_006862360.1|	-	1.7e-26	91.8	0.0	2.6e-26	91.2	0.0	1.3	1	0	0	1	1	1	1	tRNA	intron	endonuclease,	catalytic	C-terminal	domain
tRNA_int_endo_N	PF02778.9	gi|408404377|ref|YP_006862360.1|	-	1.1e-15	56.9	0.0	1.6e-15	56.3	0.0	1.3	1	0	0	1	1	1	1	tRNA	intron	endonuclease,	N-terminal	domain
PhoU_div	PF01865.11	gi|408404378|ref|YP_006862361.1|	-	2.2e-19	69.4	6.9	2.7e-19	69.2	4.8	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF47
PhoU	PF01895.14	gi|408404378|ref|YP_006862361.1|	-	0.00043	20.6	8.3	0.18	12.2	0.2	2.5	2	1	0	2	2	2	2	PhoU	domain
HAP1_N	PF04849.8	gi|408404378|ref|YP_006862361.1|	-	0.0017	17.3	1.5	0.0034	16.3	1.0	1.5	1	0	0	1	1	1	1	HAP1	N-terminal	conserved	region
Reo_sigmaC	PF04582.7	gi|408404378|ref|YP_006862361.1|	-	0.0027	16.9	1.4	0.16	11.0	0.1	2.2	1	1	1	2	2	2	2	Reovirus	sigma	C	capsid	protein
DUF458	PF04308.7	gi|408404378|ref|YP_006862361.1|	-	0.069	12.8	1.0	2.8	7.6	0.0	2.8	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF458)
Syntaxin_2	PF14523.1	gi|408404378|ref|YP_006862361.1|	-	0.076	13.0	1.7	0.22	11.5	0.4	2.1	2	0	0	2	2	2	0	Syntaxin-like	protein
HR1	PF02185.11	gi|408404378|ref|YP_006862361.1|	-	0.077	12.7	4.1	2.6	7.8	0.4	2.7	1	1	1	2	2	2	0	Hr1	repeat
DUF4423	PF14394.1	gi|408404378|ref|YP_006862361.1|	-	0.087	12.3	0.3	0.21	11.0	0.2	1.7	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
COG2	PF06148.6	gi|408404378|ref|YP_006862361.1|	-	0.11	12.4	4.4	0.12	12.1	0.6	2.4	1	1	1	2	2	2	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
LXG	PF04740.7	gi|408404378|ref|YP_006862361.1|	-	0.22	11.2	2.7	0.92	9.2	0.4	2.2	2	0	0	2	2	2	0	LXG	domain	of	WXG	superfamily
DUF948	PF06103.6	gi|408404378|ref|YP_006862361.1|	-	0.6	10.0	3.1	5	7.0	0.1	3.0	2	2	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF948)
IncA	PF04156.9	gi|408404378|ref|YP_006862361.1|	-	1.3	8.6	5.0	0.42	10.1	1.0	1.9	2	1	0	2	2	2	0	IncA	protein
DUF1664	PF07889.7	gi|408404378|ref|YP_006862361.1|	-	1.9	8.3	6.1	4.1	7.2	0.3	2.7	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF1664)
Polysacc_deac_1	PF01522.16	gi|408404379|ref|YP_006862362.1|	-	1.4e-13	50.5	0.0	3.3e-13	49.3	0.0	1.6	1	0	0	1	1	1	1	Polysaccharide	deacetylase
Glyco_hydro_57	PF03065.10	gi|408404379|ref|YP_006862362.1|	-	0.009	14.9	0.2	0.056	12.3	0.2	1.9	1	1	0	1	1	1	1	Glycosyl	hydrolase	family	57
TIR-like	PF10137.4	gi|408404379|ref|YP_006862362.1|	-	0.028	14.0	0.1	0.048	13.2	0.0	1.3	1	0	0	1	1	1	0	Predicted	nucleotide-binding	protein	containing	TIR-like	domain
Radical_SAM	PF04055.16	gi|408404380|ref|YP_006862363.1|	-	1.9e-19	70.4	0.2	1.1e-18	67.9	0.1	2.0	2	0	0	2	2	2	1	Radical	SAM	superfamily
Fer4_14	PF13394.1	gi|408404380|ref|YP_006862363.1|	-	0.033	14.1	0.0	0.58	10.1	0.0	2.3	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain
RNase_P_Rpp14	PF01900.14	gi|408404381|ref|YP_006862364.1|	-	8.5e-08	32.0	0.1	3.4e-07	30.1	0.1	1.7	1	1	0	1	1	1	1	Rpp14/Pop5	family
RNase_P_p30	PF01876.11	gi|408404382|ref|YP_006862365.1|	-	0.0026	17.0	0.0	0.0031	16.7	0.0	1.1	1	0	0	1	1	1	1	RNase	P	subunit	p30
RNA_binding	PF01877.12	gi|408404383|ref|YP_006862366.1|	-	6.3e-22	77.8	0.0	7.8e-22	77.5	0.0	1.0	1	0	0	1	1	1	1	RNA	binding
Ribosomal_S3Ae	PF01015.13	gi|408404384|ref|YP_006862367.1|	-	2.5e-46	157.5	2.7	2.8e-46	157.2	1.9	1.0	1	0	0	1	1	1	1	Ribosomal	S3Ae	family
tRNA-synt_2b	PF00587.20	gi|408404385|ref|YP_006862368.1|	-	2.4e-33	115.1	0.0	3.9e-33	114.4	0.0	1.4	1	0	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
Seryl_tRNA_N	PF02403.17	gi|408404385|ref|YP_006862368.1|	-	1.6e-25	89.2	7.2	3.3e-25	88.2	5.0	1.6	1	0	0	1	1	1	1	Seryl-tRNA	synthetase	N-terminal	domain
CRA	PF06589.6	gi|408404385|ref|YP_006862368.1|	-	0.08	12.2	0.7	1.4	8.2	0.5	2.3	2	0	0	2	2	2	0	Circumsporozoite-related	antigen	(CRA)
APG6	PF04111.7	gi|408404385|ref|YP_006862368.1|	-	0.62	9.0	6.3	0.47	9.4	2.6	1.9	2	0	0	2	2	2	0	Autophagy	protein	Apg6
Pcc1	PF09341.5	gi|408404386|ref|YP_006862369.1|	-	0.00056	19.8	0.0	0.00078	19.4	0.0	1.4	1	1	0	1	1	1	1	Transcription	factor	Pcc1
DHH	PF01368.15	gi|408404387|ref|YP_006862370.1|	-	2.2e-11	43.5	0.0	3.7e-11	42.8	0.0	1.3	1	0	0	1	1	1	1	DHH	family
DHHA1	PF02272.14	gi|408404387|ref|YP_006862370.1|	-	5.8e-09	35.5	0.0	1.8e-08	33.9	0.0	1.9	1	0	0	1	1	1	1	DHHA1	domain
Ribosomal_S13_N	PF08069.7	gi|408404388|ref|YP_006862371.1|	-	1.9e-22	78.8	0.3	3.6e-22	77.9	0.2	1.5	1	0	0	1	1	1	1	Ribosomal	S13/S15	N-terminal	domain
Ribosomal_S15	PF00312.17	gi|408404388|ref|YP_006862371.1|	-	8.6e-16	57.4	0.5	8.6e-16	57.4	0.4	1.5	2	0	0	2	2	2	1	Ribosomal	protein	S15
SecG	PF03840.9	gi|408404389|ref|YP_006862372.1|	-	0.15	11.8	1.7	1.2	8.8	0.1	2.2	2	0	0	2	2	2	0	Preprotein	translocase	SecG	subunit
DUF1282	PF06930.7	gi|408404389|ref|YP_006862372.1|	-	0.2	11.2	2.3	3.2	7.3	0.0	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1282)
FixQ	PF05545.6	gi|408404390|ref|YP_006862373.1|	-	0.021	14.4	2.5	0.03	13.9	1.7	1.2	1	0	0	1	1	1	0	Cbb3-type	cytochrome	oxidase	component	FixQ
DUF347	PF03988.7	gi|408404390|ref|YP_006862373.1|	-	0.032	14.1	1.1	0.044	13.6	0.7	1.2	1	0	0	1	1	1	0	Repeat	of	Unknown	Function	(DUF347)
Peptidase_M17_N	PF02789.12	gi|408404391|ref|YP_006862374.1|	-	0.082	12.6	0.2	0.24	11.1	0.1	1.7	1	1	0	2	2	2	0	Cytosol	aminopeptidase	family,	N-terminal	domain
DUF555	PF04475.7	gi|408404391|ref|YP_006862374.1|	-	0.098	12.6	0.2	0.14	12.1	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF555)
Glyco_trans_1_3	PF13528.1	gi|408404392|ref|YP_006862375.1|	-	1.5e-18	67.1	0.0	1.7e-08	34.0	0.0	2.2	2	0	0	2	2	2	2	Glycosyl	transferase	family	1
Glyco_tran_28_C	PF04101.11	gi|408404392|ref|YP_006862375.1|	-	3.7e-10	39.7	0.0	5.8e-10	39.0	0.0	1.3	1	0	0	1	1	1	1	Glycosyltransferase	family	28	C-terminal	domain
UDPGT	PF00201.13	gi|408404392|ref|YP_006862375.1|	-	5.3e-06	25.2	0.0	3e-05	22.7	0.0	1.8	2	0	0	2	2	2	1	UDP-glucoronosyl	and	UDP-glucosyl	transferase
Glycos_transf_1	PF00534.15	gi|408404392|ref|YP_006862375.1|	-	0.00046	19.6	0.0	0.00097	18.5	0.0	1.4	1	1	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.1	gi|408404392|ref|YP_006862375.1|	-	0.0021	18.2	0.0	0.0039	17.3	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
AMMECR1	PF01871.12	gi|408404393|ref|YP_006862376.1|	-	5.3e-52	175.3	0.0	6.2e-52	175.1	0.0	1.0	1	0	0	1	1	1	1	AMMECR1
bPH_3	PF14470.1	gi|408404394|ref|YP_006862377.1|	-	5.7e-10	39.3	0.2	6.5e-10	39.1	0.2	1.1	1	0	0	1	1	1	1	Bacterial	PH	domain
bPH_1	PF08000.6	gi|408404394|ref|YP_006862377.1|	-	0.044	13.4	0.4	0.71	9.5	0.2	2.0	1	1	1	2	2	2	0	Bacterial	PH	domain
zf-ribbon_3	PF13248.1	gi|408404395|ref|YP_006862378.1|	-	0.025	13.7	1.1	0.15	11.2	0.1	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-HIT	PF04438.11	gi|408404395|ref|YP_006862378.1|	-	0.045	13.4	2.1	0.72	9.5	0.1	2.2	2	0	0	2	2	2	0	HIT	zinc	finger
DUF3268	PF11672.3	gi|408404395|ref|YP_006862378.1|	-	0.056	13.5	0.2	0.058	13.4	0.2	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3268)
Zn-ribbon_8	PF09723.5	gi|408404395|ref|YP_006862378.1|	-	0.083	12.8	2.1	4.9	7.1	0.2	2.2	2	0	0	2	2	2	0	Zinc	ribbon	domain
DZR	PF12773.2	gi|408404395|ref|YP_006862378.1|	-	0.12	12.2	0.8	0.23	11.2	0.5	1.6	1	1	0	1	1	1	0	Double	zinc	ribbon
ADK_lid	PF05191.9	gi|408404395|ref|YP_006862378.1|	-	0.13	11.9	3.1	0.49	10.0	2.1	1.9	1	1	0	1	1	1	0	Adenylate	kinase,	active	site	lid
Zn_Tnp_IS1595	PF12760.2	gi|408404395|ref|YP_006862378.1|	-	0.15	11.9	2.5	0.29	10.9	1.7	1.5	1	1	0	1	1	1	0	Transposase	zinc-ribbon	domain
zf-ISL3	PF14690.1	gi|408404395|ref|YP_006862378.1|	-	0.16	12.0	1.3	1.7	8.7	0.1	2.1	1	1	1	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
DNA_ligase_ZBD	PF03119.11	gi|408404395|ref|YP_006862378.1|	-	0.2	11.4	0.0	0.2	11.4	0.0	1.7	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
DUF329	PF03884.9	gi|408404395|ref|YP_006862378.1|	-	0.38	10.3	2.4	1.5	8.3	1.7	2.1	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF329)
Glyoxalase_2	PF12681.2	gi|408404396|ref|YP_006862379.1|	-	1.5e-11	44.8	0.0	1.8e-11	44.6	0.0	1.1	1	0	0	1	1	1	1	Glyoxalase-like	domain
Glyoxalase	PF00903.20	gi|408404396|ref|YP_006862379.1|	-	3.4e-08	33.5	0.0	5.3e-08	32.9	0.0	1.3	1	1	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
PEP_mutase	PF13714.1	gi|408404397|ref|YP_006862380.1|	-	4.2e-60	202.9	0.0	4.9e-60	202.7	0.0	1.0	1	0	0	1	1	1	1	Phosphoenolpyruvate	phosphomutase
ICL	PF00463.16	gi|408404397|ref|YP_006862380.1|	-	3e-16	58.7	0.0	4.4e-15	54.8	0.0	2.2	1	1	1	2	2	2	2	Isocitrate	lyase	family
HisG_C	PF08029.6	gi|408404397|ref|YP_006862380.1|	-	0.11	12.4	0.0	2.5	8.1	0.0	2.6	2	0	0	2	2	2	0	HisG,	C-terminal	domain
4HBT	PF03061.17	gi|408404399|ref|YP_006862382.1|	-	3.1e-16	59.2	0.1	4.9e-16	58.6	0.0	1.3	1	0	0	1	1	1	1	Thioesterase	superfamily
NAD_binding_8	PF13450.1	gi|408404400|ref|YP_006862383.1|	-	0.00019	21.4	0.0	0.00043	20.2	0.0	1.7	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
ApbA	PF02558.11	gi|408404400|ref|YP_006862383.1|	-	0.0054	16.1	0.0	0.0089	15.4	0.0	1.3	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
FAD_binding_3	PF01494.14	gi|408404400|ref|YP_006862383.1|	-	0.099	11.6	0.0	0.13	11.3	0.0	1.2	1	0	0	1	1	1	0	FAD	binding	domain
Pyr_redox_2	PF07992.9	gi|408404400|ref|YP_006862383.1|	-	0.13	12.1	0.0	0.29	10.9	0.0	1.3	1	1	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
Nop10p	PF04135.7	gi|408404401|ref|YP_006862384.1|	-	2.3e-21	75.2	6.8	2.8e-21	75.0	4.7	1.1	1	0	0	1	1	1	1	Nucleolar	RNA-binding	protein,	Nop10p	family
RecR	PF02132.10	gi|408404401|ref|YP_006862384.1|	-	0.0031	16.9	2.4	0.0046	16.3	1.7	1.3	1	1	0	1	1	1	1	RecR	protein
PolC_DP2	PF03833.8	gi|408404401|ref|YP_006862384.1|	-	0.01	13.5	0.6	0.01	13.5	0.4	1.1	1	0	0	1	1	1	0	DNA	polymerase	II	large	subunit	DP2
DNA_ligase_ZBD	PF03119.11	gi|408404401|ref|YP_006862384.1|	-	0.028	14.0	2.4	1.8	8.3	0.1	2.2	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
DUF1272	PF06906.6	gi|408404401|ref|YP_006862384.1|	-	0.11	12.4	2.4	0.13	12.0	1.7	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1272)
zf-C4_Topoisom	PF01396.14	gi|408404401|ref|YP_006862384.1|	-	0.14	11.7	4.3	3	7.4	0.1	2.3	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
DZR	PF12773.2	gi|408404401|ref|YP_006862384.1|	-	0.25	11.1	4.9	0.46	10.3	3.4	1.4	1	1	0	1	1	1	0	Double	zinc	ribbon
zf-FPG_IleRS	PF06827.9	gi|408404401|ref|YP_006862384.1|	-	0.4	10.3	5.8	3.8	7.2	0.3	2.2	1	1	1	2	2	2	0	Zinc	finger	found	in	FPG	and	IleRS
zf-ribbon_3	PF13248.1	gi|408404401|ref|YP_006862384.1|	-	0.45	9.7	7.5	3.1	7.1	0.5	2.2	1	1	1	2	2	2	0	zinc-ribbon	domain
Integrase_Zn	PF02022.14	gi|408404401|ref|YP_006862384.1|	-	0.64	9.5	3.3	6.5	6.2	0.1	2.1	2	0	0	2	2	2	0	Integrase	Zinc	binding	domain
zf-C3HC4_3	PF13920.1	gi|408404401|ref|YP_006862384.1|	-	0.84	9.3	6.8	4.3	7.0	4.7	1.9	1	1	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
zf-TFIIB	PF13453.1	gi|408404401|ref|YP_006862384.1|	-	1.7	7.9	9.0	4.9	6.4	0.5	2.1	1	1	2	3	3	3	0	Transcription	factor	zinc-finger
zinc_ribbon_5	PF13719.1	gi|408404401|ref|YP_006862384.1|	-	1.8	8.2	7.5	6.9	6.3	0.4	2.6	3	0	0	3	3	3	0	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.7	gi|408404401|ref|YP_006862384.1|	-	2.7	7.3	7.0	6.7	6.1	0.9	2.2	2	0	0	2	2	2	0	TFIIB	zinc-binding
Auto_anti-p27	PF06677.7	gi|408404401|ref|YP_006862384.1|	-	2.8	7.7	8.1	0.73	9.6	1.1	2.1	1	1	1	2	2	2	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
zinc_ribbon_2	PF13240.1	gi|408404401|ref|YP_006862384.1|	-	2.9	7.4	7.0	3.6	7.2	0.4	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-tcix	PF14952.1	gi|408404401|ref|YP_006862384.1|	-	3.6	7.0	9.5	0.26	10.6	0.5	2.1	1	1	1	2	2	2	0	Putative	treble-clef,	zinc-finger,	Zn-binding
zf-LITAF-like	PF10601.4	gi|408404401|ref|YP_006862384.1|	-	4.3	7.2	7.5	10	6.0	0.9	2.1	1	1	1	2	2	2	0	LITAF-like	zinc	ribbon	domain
zinc_ribbon_4	PF13717.1	gi|408404401|ref|YP_006862384.1|	-	5.1	6.8	8.9	11	5.8	0.8	2.7	3	0	0	3	3	3	0	zinc-ribbon	domain
DUF329	PF03884.9	gi|408404401|ref|YP_006862384.1|	-	6	6.5	10.5	6.1	6.4	2.4	2.2	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF329)
EIF_2_alpha	PF07541.7	gi|408404402|ref|YP_006862385.1|	-	1.4e-22	79.5	2.0	3.2e-22	78.3	0.7	2.0	2	0	0	2	2	2	1	Eukaryotic	translation	initiation	factor	2	alpha	subunit
S1	PF00575.18	gi|408404402|ref|YP_006862385.1|	-	5.5e-14	52.0	0.9	1.6e-13	50.5	0.1	2.1	2	0	0	2	2	2	1	S1	RNA	binding	domain
COG5	PF10392.4	gi|408404402|ref|YP_006862385.1|	-	0.011	15.7	1.9	0.021	14.7	0.2	2.0	2	0	0	2	2	2	0	Golgi	transport	complex	subunit	5
MBT	PF02820.13	gi|408404402|ref|YP_006862385.1|	-	0.047	13.6	0.0	0.097	12.5	0.0	1.5	1	0	0	1	1	1	0	mbt	repeat
ATP-cone	PF03477.11	gi|408404403|ref|YP_006862386.1|	-	0.00095	19.5	0.6	0.0018	18.6	0.4	1.4	1	0	0	1	1	1	1	ATP	cone	domain
CobA_CobO_BtuR	PF02572.10	gi|408404404|ref|YP_006862387.1|	-	8e-63	211.1	0.0	9e-63	210.9	0.0	1.0	1	0	0	1	1	1	1	ATP:corrinoid	adenosyltransferase	BtuR/CobO/CobP
IstB_IS21	PF01695.12	gi|408404404|ref|YP_006862387.1|	-	2.9e-07	30.0	0.7	0.00085	18.7	0.0	2.1	2	0	0	2	2	2	2	IstB-like	ATP	binding	protein
AAA_19	PF13245.1	gi|408404404|ref|YP_006862387.1|	-	0.025	14.3	0.2	0.054	13.2	0.2	1.6	1	0	0	1	1	1	0	Part	of	AAA	domain
AAA_22	PF13401.1	gi|408404404|ref|YP_006862387.1|	-	0.098	12.7	1.9	0.43	10.7	1.3	1.8	1	1	0	1	1	1	0	AAA	domain
GATase_3	PF07685.9	gi|408404405|ref|YP_006862388.1|	-	1.2e-29	102.9	0.1	1.7e-29	102.4	0.1	1.2	1	0	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
CbiA	PF01656.18	gi|408404405|ref|YP_006862388.1|	-	8.3e-24	84.0	0.5	1.7e-23	83.0	0.4	1.5	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_26	PF13500.1	gi|408404405|ref|YP_006862388.1|	-	3.9e-15	55.9	2.9	1.1e-09	38.1	0.0	2.5	1	1	0	2	2	2	2	AAA	domain
AAA_17	PF13207.1	gi|408404405|ref|YP_006862388.1|	-	0.011	16.5	0.1	0.088	13.6	0.0	2.6	3	1	0	3	3	3	0	AAA	domain
Peptidase_S51	PF03575.12	gi|408404405|ref|YP_006862388.1|	-	0.041	13.6	0.0	0.076	12.7	0.0	1.4	1	0	0	1	1	1	0	Peptidase	family	S51
CbiC	PF02570.10	gi|408404406|ref|YP_006862389.1|	-	3e-73	245.4	0.2	3.5e-73	245.2	0.1	1.0	1	0	0	1	1	1	1	Precorrin-8X	methylmutase
CbiX	PF01903.12	gi|408404407|ref|YP_006862390.1|	-	3.6e-35	120.2	0.0	4.1e-18	65.4	0.0	2.1	2	0	0	2	2	2	2	CbiX
CbiK	PF06180.6	gi|408404407|ref|YP_006862390.1|	-	3.4e-11	42.7	0.1	5.5e-11	42.0	0.1	1.3	1	0	0	1	1	1	1	Cobalt	chelatase	(CbiK)
PMT	PF02366.13	gi|408404409|ref|YP_006862392.1|	-	9.1e-14	51.3	9.4	9.1e-14	51.3	6.5	2.7	2	1	0	2	2	2	1	Dolichyl-phosphate-mannose-protein	mannosyltransferase
PMT_2	PF13231.1	gi|408404410|ref|YP_006862393.1|	-	1.9e-13	50.6	19.7	1.9e-13	50.6	13.6	3.6	3	1	1	4	4	4	1	Dolichyl-phosphate-mannose-protein	mannosyltransferase
CbiG_N	PF11760.3	gi|408404411|ref|YP_006862394.1|	-	9.2e-33	111.8	0.3	1.6e-32	111.0	0.2	1.4	1	0	0	1	1	1	1	Cobalamin	synthesis	G	N-terminal
CbiG_C	PF01890.11	gi|408404411|ref|YP_006862394.1|	-	4.7e-29	101.0	0.0	8.9e-29	100.2	0.0	1.5	1	0	0	1	1	1	1	Cobalamin	synthesis	G	C-terminus
CbiG_mid	PF11761.3	gi|408404411|ref|YP_006862394.1|	-	5e-12	45.8	0.0	1.2e-11	44.7	0.0	1.7	1	0	0	1	1	1	1	Cobalamin	biosynthesis	central	region
HTH_AsnC-type	PF13404.1	gi|408404413|ref|YP_006862396.1|	-	1.5e-12	46.8	0.0	2.4e-12	46.2	0.0	1.4	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_24	PF13412.1	gi|408404413|ref|YP_006862396.1|	-	1.1e-10	40.6	0.0	1.6e-10	40.1	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.14	gi|408404413|ref|YP_006862396.1|	-	1.8e-05	24.3	0.1	3.6e-05	23.3	0.0	1.4	1	1	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_5	PF01022.15	gi|408404413|ref|YP_006862396.1|	-	5.3e-05	22.8	0.0	8.5e-05	22.1	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
zf-FCS	PF06467.9	gi|408404413|ref|YP_006862396.1|	-	5.4e-05	22.7	4.7	0.00012	21.6	3.3	1.6	1	0	0	1	1	1	1	MYM-type	Zinc	finger	with	FCS	sequence	motif
Arc_trans_TRASH	PF08394.5	gi|408404413|ref|YP_006862396.1|	-	0.00019	21.5	2.6	0.00041	20.4	1.8	1.6	1	0	0	1	1	1	1	Archaeal	TRASH	domain
DUF2250	PF10007.4	gi|408404413|ref|YP_006862396.1|	-	0.00054	19.8	0.9	0.00085	19.1	0.6	1.4	1	1	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
DUF2089	PF09862.4	gi|408404413|ref|YP_006862396.1|	-	0.0021	17.8	0.3	0.038	13.7	0.1	2.2	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF2089)
HTH_9	PF08221.6	gi|408404413|ref|YP_006862396.1|	-	0.0022	17.8	0.0	0.0035	17.1	0.0	1.3	1	0	0	1	1	1	1	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
FeoC	PF09012.5	gi|408404413|ref|YP_006862396.1|	-	0.0032	17.1	0.0	0.0032	17.1	0.0	2.0	2	0	0	2	2	2	1	FeoC	like	transcriptional	regulator
HTH_Tnp_ISL3	PF13542.1	gi|408404413|ref|YP_006862396.1|	-	0.0099	15.0	0.1	0.017	14.2	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	transposase	family	ISL3
Kinetocho_Slk19	PF12709.2	gi|408404413|ref|YP_006862396.1|	-	0.027	14.5	3.9	1.2	9.2	0.2	2.4	2	0	0	2	2	2	0	Central	kinetochore-associated
CBM_10	PF02013.11	gi|408404413|ref|YP_006862396.1|	-	0.03	14.5	0.1	0.057	13.6	0.1	1.4	1	0	0	1	1	1	0	Cellulose	or	protein	binding	domain
HTH_28	PF13518.1	gi|408404413|ref|YP_006862396.1|	-	0.056	13.4	0.0	0.12	12.3	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
Fe_dep_repress	PF01325.14	gi|408404413|ref|YP_006862396.1|	-	0.067	13.1	0.0	0.11	12.3	0.0	1.4	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
MarR_2	PF12802.2	gi|408404413|ref|YP_006862396.1|	-	0.068	12.8	0.0	0.094	12.4	0.0	1.2	1	0	0	1	1	1	0	MarR	family
Sigma70_r4_2	PF08281.7	gi|408404413|ref|YP_006862396.1|	-	0.076	12.4	0.3	0.25	10.8	0.0	2.0	3	0	0	3	3	3	0	Sigma-70,	region	4
DUF4423	PF14394.1	gi|408404413|ref|YP_006862396.1|	-	0.1	12.1	0.0	0.17	11.4	0.0	1.3	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
ATPase-cat_bd	PF12156.3	gi|408404413|ref|YP_006862396.1|	-	0.84	10.2	5.2	0.46	11.0	1.9	1.8	2	1	1	3	3	3	0	Putative	metal-binding	domain	of	cation	transport	ATPase
CbiD	PF01888.12	gi|408404414|ref|YP_006862397.1|	-	8.4e-86	287.1	6.9	1.1e-85	286.7	4.8	1.1	1	0	0	1	1	1	1	CbiD
YonK	PF09642.5	gi|408404414|ref|YP_006862397.1|	-	0.25	11.0	1.4	0.51	10.0	0.2	2.1	2	0	0	2	2	2	0	YonK	protein
adh_short_C2	PF13561.1	gi|408404415|ref|YP_006862398.1|	-	1.5e-30	106.7	0.2	1.8e-30	106.5	0.2	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.20	gi|408404415|ref|YP_006862398.1|	-	1.6e-28	99.7	0.0	2.3e-28	99.1	0.0	1.3	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.5	gi|408404415|ref|YP_006862398.1|	-	2.7e-10	40.1	0.0	4.9e-10	39.3	0.0	1.4	1	0	0	1	1	1	1	KR	domain
Epimerase	PF01370.16	gi|408404415|ref|YP_006862398.1|	-	1.1e-06	28.3	0.2	3.4e-06	26.6	0.1	1.8	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
NAD_binding_10	PF13460.1	gi|408404415|ref|YP_006862398.1|	-	1.4e-05	25.1	0.0	2.2e-05	24.5	0.0	1.3	1	0	0	1	1	1	1	NADH(P)-binding
RmlD_sub_bind	PF04321.12	gi|408404415|ref|YP_006862398.1|	-	0.0016	17.3	0.0	0.0027	16.6	0.0	1.3	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
DFP	PF04127.10	gi|408404415|ref|YP_006862398.1|	-	0.0035	16.9	0.1	0.0069	16.0	0.1	1.4	1	0	0	1	1	1	1	DNA	/	pantothenate	metabolism	flavoprotein
F420_oxidored	PF03807.12	gi|408404415|ref|YP_006862398.1|	-	0.0041	17.5	0.2	0.011	16.0	0.1	1.7	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
3HCDH_N	PF02737.13	gi|408404415|ref|YP_006862398.1|	-	0.076	12.6	1.0	0.09	12.4	0.2	1.5	2	0	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
S-AdoMet_synt_C	PF02773.11	gi|408404416|ref|YP_006862399.1|	-	3.1e-71	237.4	0.4	5.7e-71	236.6	0.3	1.4	1	0	0	1	1	1	1	S-adenosylmethionine	synthetase,	C-terminal	domain
S-AdoMet_synt_M	PF02772.11	gi|408404416|ref|YP_006862399.1|	-	2.5e-50	169.4	0.2	1.5e-49	166.8	0.0	2.2	3	0	0	3	3	3	1	S-adenosylmethionine	synthetase,	central	domain
S-AdoMet_synt_N	PF00438.15	gi|408404416|ref|YP_006862399.1|	-	1e-43	147.6	0.5	2.1e-43	146.6	0.0	1.7	2	0	0	2	2	2	1	S-adenosylmethionine	synthetase,	N-terminal	domain
AdoMet_Synthase	PF01941.14	gi|408404416|ref|YP_006862399.1|	-	0.094	11.1	0.1	0.78	8.1	0.0	2.1	2	1	0	2	2	2	0	S-adenosylmethionine	synthetase	(AdoMet	synthetase)
LSM	PF01423.17	gi|408404417|ref|YP_006862400.1|	-	3.7e-17	61.6	0.8	5.5e-17	61.0	0.5	1.3	1	0	0	1	1	1	1	LSM	domain
Rad51	PF08423.6	gi|408404418|ref|YP_006862401.1|	-	1.9e-30	105.5	0.4	2.8e-29	101.8	0.0	2.0	1	1	1	2	2	2	1	Rad51
RecA	PF00154.16	gi|408404418|ref|YP_006862401.1|	-	6.7e-11	41.8	0.8	7.6e-11	41.6	0.5	1.3	1	1	0	1	1	1	1	recA	bacterial	DNA	recombination	protein
AAA_25	PF13481.1	gi|408404418|ref|YP_006862401.1|	-	6.9e-10	38.6	0.7	5e-09	35.8	0.5	2.0	1	1	0	1	1	1	1	AAA	domain
KaiC	PF06745.8	gi|408404418|ref|YP_006862401.1|	-	3.6e-06	26.2	1.6	5.7e-05	22.3	0.3	2.7	1	1	1	3	3	3	1	KaiC
AAA_10	PF12846.2	gi|408404418|ref|YP_006862401.1|	-	0.00064	19.2	0.0	0.0012	18.3	0.0	1.4	1	1	0	1	1	1	1	AAA-like	domain
TrwB_AAD_bind	PF10412.4	gi|408404418|ref|YP_006862401.1|	-	0.004	15.8	0.0	0.0088	14.7	0.0	1.5	1	0	0	1	1	1	1	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
ABC_tran	PF00005.22	gi|408404418|ref|YP_006862401.1|	-	0.018	15.3	0.1	0.054	13.7	0.0	1.6	1	1	0	1	1	1	0	ABC	transporter
RNA_helicase	PF00910.17	gi|408404418|ref|YP_006862401.1|	-	0.019	15.1	0.0	0.1	12.7	0.0	2.0	2	0	0	2	2	2	0	RNA	helicase
AAA_22	PF13401.1	gi|408404418|ref|YP_006862401.1|	-	0.03	14.4	0.1	0.1	12.7	0.1	1.9	1	1	0	1	1	1	0	AAA	domain
AAA_24	PF13479.1	gi|408404418|ref|YP_006862401.1|	-	0.12	11.9	0.1	0.25	10.9	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
AAA_33	PF13671.1	gi|408404418|ref|YP_006862401.1|	-	0.13	12.1	0.1	0.54	10.1	0.1	2.0	1	1	0	1	1	1	0	AAA	domain
AAA_16	PF13191.1	gi|408404418|ref|YP_006862401.1|	-	0.17	11.8	0.4	0.67	9.9	0.2	2.1	1	1	0	1	1	1	0	AAA	ATPase	domain
PAXNEB	PF05625.6	gi|408404418|ref|YP_006862401.1|	-	0.43	9.3	1.6	0.65	8.7	1.1	1.2	1	0	0	1	1	1	0	PAXNEB	protein
Glycos_transf_2	PF00535.21	gi|408404419|ref|YP_006862402.1|	-	8.8e-36	123.1	0.0	1.4e-35	122.4	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.1	gi|408404419|ref|YP_006862402.1|	-	1.5e-18	67.4	0.0	5.1e-18	65.7	0.0	1.8	1	1	1	2	2	2	1	Glycosyltransferase	like	family	2
GtrA	PF04138.9	gi|408404419|ref|YP_006862402.1|	-	9.2e-18	64.3	13.5	8.3e-17	61.2	9.9	2.0	1	1	0	1	1	1	1	GtrA-like	protein
NTP_transf_3	PF12804.2	gi|408404419|ref|YP_006862402.1|	-	4.6e-07	30.0	0.0	7.6e-07	29.3	0.0	1.3	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
Glyco_transf_21	PF13506.1	gi|408404419|ref|YP_006862402.1|	-	5.6e-05	22.4	0.0	0.00011	21.5	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferase	family	21
Glyco_tranf_2_2	PF10111.4	gi|408404419|ref|YP_006862402.1|	-	8.5e-05	21.7	0.0	0.00013	21.1	0.0	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_trans_2_3	PF13632.1	gi|408404419|ref|YP_006862402.1|	-	0.012	15.3	0.2	0.012	15.3	0.1	1.6	2	0	0	2	2	2	0	Glycosyl	transferase	family	group	2
Glyco_tranf_2_4	PF13704.1	gi|408404419|ref|YP_006862402.1|	-	0.044	14.0	0.0	0.076	13.3	0.0	1.4	1	0	0	1	1	1	0	Glycosyl	transferase	family	2
HTH_45	PF14947.1	gi|408404420|ref|YP_006862403.1|	-	0.0014	18.3	0.2	0.0017	18.1	0.1	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
dUTPase_2	PF08761.6	gi|408404422|ref|YP_006862405.1|	-	8e-20	71.5	2.5	4e-14	53.0	0.1	2.0	1	1	1	2	2	2	2	dUTPase
DUF550	PF04447.7	gi|408404422|ref|YP_006862405.1|	-	0.0027	17.2	0.4	0.0055	16.2	0.0	1.6	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF550)
PRA-PH	PF01503.12	gi|408404422|ref|YP_006862405.1|	-	0.087	13.1	0.0	0.11	12.8	0.0	1.2	1	0	0	1	1	1	0	Phosphoribosyl-ATP	pyrophosphohydrolase
MtrA	PF04208.9	gi|408404423|ref|YP_006862406.1|	-	6.3e-28	97.3	0.0	7.2e-28	97.2	0.0	1.0	1	0	0	1	1	1	1	Tetrahydromethanopterin	S-methyltransferase,	subunit	A
Pyridox_oxidase	PF01243.15	gi|408404424|ref|YP_006862407.1|	-	7.3e-19	67.5	0.0	1e-18	67.0	0.0	1.2	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Pyridox_ox_2	PF12900.2	gi|408404424|ref|YP_006862407.1|	-	1.1e-11	44.7	0.0	1.6e-11	44.2	0.0	1.2	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
P12	PF12669.2	gi|408404425|ref|YP_006862408.1|	-	0.0076	16.4	0.2	1.2	9.3	0.0	2.3	2	0	0	2	2	2	1	Virus	attachment	protein	p12	family
EphA2_TM	PF14575.1	gi|408404425|ref|YP_006862408.1|	-	0.014	15.8	0.9	1.5	9.2	0.1	2.1	1	1	1	2	2	2	0	Ephrin	type-A	receptor	2	transmembrane	domain
DUF1361	PF07099.6	gi|408404425|ref|YP_006862408.1|	-	0.023	14.5	0.0	0.029	14.1	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1361)
DUF2798	PF11391.3	gi|408404425|ref|YP_006862408.1|	-	0.03	14.0	0.6	0.03	14.0	0.4	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2798)
DUF2615	PF11027.3	gi|408404425|ref|YP_006862408.1|	-	0.063	13.2	0.2	0.23	11.3	0.0	1.7	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2615)
Herpes_UL45	PF05473.7	gi|408404425|ref|YP_006862408.1|	-	0.14	11.5	0.1	0.21	10.9	0.1	1.3	1	1	0	1	1	1	0	UL45	protein
Syndecan	PF01034.15	gi|408404425|ref|YP_006862408.1|	-	0.15	11.7	5.4	3.9	7.1	1.7	2.1	1	1	1	2	2	2	0	Syndecan	domain
NnrS	PF05940.7	gi|408404425|ref|YP_006862408.1|	-	0.16	10.8	3.1	0.36	9.6	2.1	1.7	1	1	0	1	1	1	0	NnrS	protein
DUF1469	PF07332.6	gi|408404425|ref|YP_006862408.1|	-	2.9	7.6	7.5	8.6	6.1	5.2	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1469)
dUTPase_2	PF08761.6	gi|408404426|ref|YP_006862409.1|	-	0.24	11.4	3.0	1.1	9.3	0.1	2.4	1	1	1	2	2	2	0	dUTPase
DUF892	PF05974.7	gi|408404427|ref|YP_006862410.1|	-	6.9e-07	29.2	0.2	8e-07	28.9	0.2	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF892)
N_NLPC_P60	PF12912.2	gi|408404427|ref|YP_006862410.1|	-	0.086	12.9	0.6	0.096	12.7	0.4	1.3	1	1	0	1	1	1	0	NLPC_P60	stabilising	domain,	N	term
Cupin_3	PF05899.7	gi|408404428|ref|YP_006862411.1|	-	1.5e-07	30.7	0.0	4e-07	29.3	0.0	1.6	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF861)
Cupin_2	PF07883.6	gi|408404428|ref|YP_006862411.1|	-	4.9e-07	29.1	0.1	8.6e-07	28.3	0.1	1.5	1	1	0	1	1	1	1	Cupin	domain
AraC_binding_2	PF14525.1	gi|408404428|ref|YP_006862411.1|	-	4.3e-06	26.4	0.0	5.2e-06	26.1	0.0	1.1	1	0	0	1	1	1	1	AraC-binding-like	domain
AraC_binding	PF02311.14	gi|408404428|ref|YP_006862411.1|	-	0.00033	20.3	0.1	0.0005	19.7	0.0	1.2	1	0	0	1	1	1	1	AraC-like	ligand	binding	domain
Cupin_6	PF12852.2	gi|408404428|ref|YP_006862411.1|	-	0.011	15.4	0.0	0.013	15.1	0.0	1.1	1	0	0	1	1	1	0	Cupin
EutQ	PF06249.7	gi|408404428|ref|YP_006862411.1|	-	0.026	14.0	0.0	0.039	13.4	0.0	1.5	1	1	0	1	1	1	0	Ethanolamine	utilisation	protein	EutQ
Methyltransf_31	PF13847.1	gi|408404429|ref|YP_006862412.1|	-	1.7e-15	56.9	0.0	2.7e-15	56.2	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|408404429|ref|YP_006862412.1|	-	2.4e-13	50.1	0.0	3.5e-13	49.5	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.7	gi|408404429|ref|YP_006862412.1|	-	6.8e-13	48.9	0.0	1.1e-12	48.2	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|408404429|ref|YP_006862412.1|	-	2.6e-11	44.0	0.0	4.2e-11	43.4	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|408404429|ref|YP_006862412.1|	-	1.3e-09	38.3	0.0	2.8e-09	37.3	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|408404429|ref|YP_006862412.1|	-	1.2e-08	35.2	0.0	2e-08	34.5	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.13	gi|408404429|ref|YP_006862412.1|	-	2.8e-08	33.1	0.0	6.2e-07	28.7	0.0	2.1	2	0	0	2	2	2	1	ubiE/COQ5	methyltransferase	family
Methyltransf_26	PF13659.1	gi|408404429|ref|YP_006862412.1|	-	1.4e-05	25.0	0.2	2.5e-05	24.2	0.1	1.5	1	1	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.9	gi|408404429|ref|YP_006862412.1|	-	0.00018	20.9	0.1	0.00042	19.7	0.0	1.5	2	0	0	2	2	2	1	Methyltransferase	small	domain
PCMT	PF01135.14	gi|408404429|ref|YP_006862412.1|	-	0.0025	17.3	0.0	0.0041	16.6	0.0	1.2	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
PrmA	PF06325.8	gi|408404429|ref|YP_006862412.1|	-	0.026	13.6	0.0	0.043	12.9	0.0	1.3	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
GCD14	PF08704.5	gi|408404429|ref|YP_006862412.1|	-	0.038	13.5	0.0	0.069	12.6	0.0	1.4	1	0	0	1	1	1	0	tRNA	methyltransferase	complex	GCD14	subunit
FtsJ	PF01728.14	gi|408404429|ref|YP_006862412.1|	-	0.066	13.1	0.0	0.11	12.5	0.0	1.3	1	0	0	1	1	1	0	FtsJ-like	methyltransferase
CMAS	PF02353.15	gi|408404429|ref|YP_006862412.1|	-	0.13	11.3	0.0	0.25	10.3	0.0	1.4	2	0	0	2	2	2	0	Mycolic	acid	cyclopropane	synthetase
HSP20	PF00011.16	gi|408404431|ref|YP_006862414.1|	-	5.5e-09	35.8	0.0	7.2e-09	35.4	0.0	1.1	1	0	0	1	1	1	1	Hsp20/alpha	crystallin	family
OCD_Mu_crystall	PF02423.10	gi|408404432|ref|YP_006862415.1|	-	0.009	14.8	1.7	0.0096	14.7	1.2	1.1	1	0	0	1	1	1	1	Ornithine	cyclodeaminase/mu-crystallin	family
Med27	PF11571.3	gi|408404434|ref|YP_006862417.1|	-	0.054	13.6	0.0	0.059	13.5	0.0	1.0	1	0	0	1	1	1	0	Mediator	complex	subunit	27
SSV1_ORF_D-335	PF07935.6	gi|408404434|ref|YP_006862417.1|	-	0.1	12.3	0.0	0.1	12.3	0.0	1.1	1	0	0	1	1	1	0	ORF	D-335-like	protein
HTH_45	PF14947.1	gi|408404435|ref|YP_006862418.1|	-	4.7e-14	51.9	1.1	5.5e-14	51.7	0.8	1.0	1	0	0	1	1	1	1	Winged	helix-turn-helix
AroM	PF07302.6	gi|408404437|ref|YP_006862420.1|	-	0.025	13.9	0.0	0.031	13.5	0.0	1.1	1	0	0	1	1	1	0	AroM	protein
Arginase	PF00491.16	gi|408404439|ref|YP_006862422.1|	-	0.012	14.9	0.1	0.013	14.7	0.1	1.0	1	0	0	1	1	1	0	Arginase	family
DUF4112	PF13430.1	gi|408404439|ref|YP_006862422.1|	-	0.027	14.3	1.0	5.4	6.9	0.0	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4112)
Dicistro_VP4	PF11492.3	gi|408404439|ref|YP_006862422.1|	-	0.029	14.3	1.3	0.57	10.2	0.3	2.1	1	1	0	2	2	2	0	Cricket	paralysis	virus,	VP4
bPH_3	PF14470.1	gi|408404440|ref|YP_006862423.1|	-	0.0045	17.2	0.0	0.0045	17.2	0.0	1.2	1	0	0	1	1	1	1	Bacterial	PH	domain
Phage-tail_1	PF09097.5	gi|408404440|ref|YP_006862423.1|	-	0.11	12.0	0.0	0.11	12.0	0.0	1.1	1	0	0	1	1	1	0	Baseplate	structural	protein,	domain	1
Glyoxalase_2	PF12681.2	gi|408404441|ref|YP_006862424.1|	-	4.8e-16	59.3	0.0	5.7e-16	59.0	0.0	1.1	1	0	0	1	1	1	1	Glyoxalase-like	domain
Glyoxalase	PF00903.20	gi|408404441|ref|YP_006862424.1|	-	8.2e-12	45.2	0.0	9.8e-12	44.9	0.0	1.1	1	0	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
DUF669	PF05037.8	gi|408404441|ref|YP_006862424.1|	-	0.032	14.1	0.4	0.97	9.3	0.1	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF669)
Glyoxalase_4	PF13669.1	gi|408404441|ref|YP_006862424.1|	-	0.041	13.8	0.0	0.11	12.5	0.0	1.8	1	1	0	1	1	1	0	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Methyltransf_31	PF13847.1	gi|408404442|ref|YP_006862425.1|	-	6.8e-15	54.9	0.0	1.7e-14	53.6	0.0	1.6	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|408404442|ref|YP_006862425.1|	-	8.4e-15	55.3	0.0	1.4e-14	54.6	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.7	gi|408404442|ref|YP_006862425.1|	-	3.3e-14	53.1	0.0	6.6e-14	52.1	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|408404442|ref|YP_006862425.1|	-	3.6e-14	52.7	0.0	5.4e-14	52.2	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|408404442|ref|YP_006862425.1|	-	2.5e-12	47.1	0.0	4.3e-12	46.3	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|408404442|ref|YP_006862425.1|	-	2.3e-08	34.3	0.0	5.6e-08	33.0	0.0	1.7	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_2	PF00891.13	gi|408404442|ref|YP_006862425.1|	-	4.5e-08	32.5	0.0	1.2e-07	31.2	0.0	1.7	1	1	0	1	1	1	1	O-methyltransferase
MTS	PF05175.9	gi|408404442|ref|YP_006862425.1|	-	5.2e-08	32.4	0.0	8.4e-08	31.7	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_9	PF08003.6	gi|408404442|ref|YP_006862425.1|	-	2.5e-07	29.6	0.0	3.4e-07	29.2	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1698)
MetW	PF07021.7	gi|408404442|ref|YP_006862425.1|	-	1.2e-06	28.0	0.0	1.7e-06	27.5	0.0	1.2	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
Methyltransf_26	PF13659.1	gi|408404442|ref|YP_006862425.1|	-	3.6e-06	27.0	0.0	8.5e-06	25.7	0.0	1.6	1	1	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.13	gi|408404442|ref|YP_006862425.1|	-	1.3e-05	24.4	0.0	2.4e-05	23.5	0.0	1.4	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_4	PF02390.12	gi|408404442|ref|YP_006862425.1|	-	1.5e-05	24.1	0.0	4.7e-05	22.5	0.0	1.8	1	1	1	2	2	2	1	Putative	methyltransferase
CMAS	PF02353.15	gi|408404442|ref|YP_006862425.1|	-	0.00025	20.2	0.0	0.00036	19.6	0.0	1.2	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
NodS	PF05401.6	gi|408404442|ref|YP_006862425.1|	-	0.00031	20.1	0.0	0.00047	19.6	0.0	1.2	1	0	0	1	1	1	1	Nodulation	protein	S	(NodS)
PCMT	PF01135.14	gi|408404442|ref|YP_006862425.1|	-	0.011	15.2	0.0	0.031	13.8	0.0	1.7	2	0	0	2	2	2	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_32	PF13679.1	gi|408404442|ref|YP_006862425.1|	-	0.012	15.3	0.0	0.019	14.6	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
PrmA	PF06325.8	gi|408404442|ref|YP_006862425.1|	-	0.033	13.3	0.0	0.046	12.8	0.0	1.2	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
Pox_MCEL	PF03291.11	gi|408404442|ref|YP_006862425.1|	-	0.052	12.4	0.0	0.083	11.7	0.0	1.5	1	0	0	1	1	1	0	mRNA	capping	enzyme
FAD-oxidase_C	PF02913.14	gi|408404443|ref|YP_006862426.1|	-	1.6e-48	165.1	0.0	2.2e-48	164.7	0.0	1.2	1	0	0	1	1	1	1	FAD	linked	oxidases,	C-terminal	domain
FAD_binding_4	PF01565.18	gi|408404443|ref|YP_006862426.1|	-	5.1e-37	126.4	0.0	9.5e-37	125.5	0.0	1.4	1	0	0	1	1	1	1	FAD	binding	domain
DnaJ_CXXCXGXG	PF00684.14	gi|408404444|ref|YP_006862427.1|	-	0.0005	20.0	1.5	0.0005	20.0	1.1	2.4	1	1	1	2	2	2	2	DnaJ	central	domain
Lar_restr_allev	PF14354.1	gi|408404444|ref|YP_006862427.1|	-	0.0047	17.1	14.0	0.17	12.1	0.5	3.0	1	1	2	3	3	3	2	Restriction	alleviation	protein	Lar
DUF329	PF03884.9	gi|408404444|ref|YP_006862427.1|	-	0.15	11.6	11.1	0.17	11.4	0.4	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF329)
SerH	PF06873.6	gi|408404444|ref|YP_006862427.1|	-	0.16	10.5	5.4	0.18	10.3	3.8	1.1	1	0	0	1	1	1	0	Cell	surface	immobilisation	antigen	SerH
Zn_Tnp_IS1595	PF12760.2	gi|408404444|ref|YP_006862427.1|	-	0.59	9.9	12.3	5.2	6.9	2.7	3.1	1	1	2	3	3	3	0	Transposase	zinc-ribbon	domain
Zn-ribbon_8	PF09723.5	gi|408404444|ref|YP_006862427.1|	-	0.68	9.9	11.7	9.4	6.2	0.3	3.3	2	1	1	3	3	3	0	Zinc	ribbon	domain
Zn_Tnp_IS1	PF03811.8	gi|408404444|ref|YP_006862427.1|	-	1.3	8.6	9.6	5.1	6.6	0.0	3.2	3	0	0	3	3	3	0	InsA	N-terminal	domain
zf-nanos	PF05741.8	gi|408404444|ref|YP_006862427.1|	-	1.8	8.5	12.7	5.5	7.0	5.9	2.6	2	1	0	2	2	2	0	Nanos	RNA	binding	domain
zf-Di19	PF05605.7	gi|408404444|ref|YP_006862427.1|	-	4.8	7.3	15.3	11	6.2	0.2	3.0	1	1	1	2	2	2	0	Drought	induced	19	protein	(Di19),	zinc-binding
Prok-RING_4	PF14447.1	gi|408404444|ref|YP_006862427.1|	-	5.4	6.6	12.3	16	5.1	0.1	3.2	3	0	0	3	3	3	0	Prokaryotic	RING	finger	family	4
Cys_rich_KTR	PF14205.1	gi|408404444|ref|YP_006862427.1|	-	7.8	6.0	11.9	3.2	7.2	0.1	3.0	2	1	1	3	3	3	0	Cysteine-rich	KTR
zf-C2H2_4	PF13894.1	gi|408404444|ref|YP_006862427.1|	-	8.8	6.9	15.8	18	5.9	1.0	3.6	3	2	0	3	3	3	0	C2H2-type	zinc	finger
Antifungal_prot	PF11402.3	gi|408404444|ref|YP_006862427.1|	-	9.5	6.4	12.0	2	8.6	5.0	2.1	1	1	0	2	2	2	0	Antifungal	protein
DUF359	PF04019.7	gi|408404445|ref|YP_006862428.1|	-	4.4e-35	119.6	0.0	6.7e-35	119.0	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF359)
HEM4	PF02602.10	gi|408404445|ref|YP_006862428.1|	-	0.041	13.1	0.0	0.075	12.2	0.0	1.5	1	1	0	1	1	1	0	Uroporphyrinogen-III	synthase	HemD
GxGYxYP	PF14323.1	gi|408404445|ref|YP_006862428.1|	-	0.1	11.2	0.0	0.1	11.2	0.0	1.1	1	0	0	1	1	1	0	GxGYxY	sequence	motif	in	domain	of	unknown	function
MAF_flag10	PF01973.13	gi|408404445|ref|YP_006862428.1|	-	0.12	11.8	0.0	0.16	11.5	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	DUF115
ParA	PF10609.4	gi|408404446|ref|YP_006862429.1|	-	6.5e-36	122.0	0.3	1.4e-35	120.9	0.2	1.6	1	0	0	1	1	1	1	ParA/MinD	ATPase	like
CbiA	PF01656.18	gi|408404446|ref|YP_006862429.1|	-	2.2e-22	79.4	0.1	3.3e-22	78.8	0.0	1.2	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
DUF59	PF01883.14	gi|408404446|ref|YP_006862429.1|	-	2.1e-20	72.4	1.5	2.7e-20	72.1	0.0	1.9	2	0	0	2	2	2	1	Domain	of	unknown	function	DUF59
AAA_31	PF13614.1	gi|408404446|ref|YP_006862429.1|	-	1.7e-11	44.3	0.0	1.1e-10	41.7	0.0	2.0	2	0	0	2	2	2	1	AAA	domain
MipZ	PF09140.6	gi|408404446|ref|YP_006862429.1|	-	1.3e-07	31.0	0.2	3.3e-07	29.6	0.0	1.8	2	1	0	2	2	2	1	ATPase	MipZ
Fer4_NifH	PF00142.13	gi|408404446|ref|YP_006862429.1|	-	1.5e-06	27.5	0.2	7.6e-05	22.0	0.0	2.2	2	0	0	2	2	2	1	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
ArsA_ATPase	PF02374.10	gi|408404446|ref|YP_006862429.1|	-	4e-06	26.1	1.3	4e-06	26.1	0.9	2.4	2	1	1	3	3	3	1	Anion-transporting	ATPase
AAA_26	PF13500.1	gi|408404446|ref|YP_006862429.1|	-	8.1e-06	25.5	0.6	0.065	12.8	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
VirC1	PF07015.6	gi|408404446|ref|YP_006862429.1|	-	0.0001	21.4	0.1	0.00021	20.4	0.1	1.5	1	0	0	1	1	1	1	VirC1	protein
SRP54	PF00448.17	gi|408404446|ref|YP_006862429.1|	-	0.0055	16.1	0.3	0.013	14.9	0.2	1.6	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
AAA_25	PF13481.1	gi|408404446|ref|YP_006862429.1|	-	0.0072	15.7	0.1	0.016	14.6	0.1	1.5	1	0	0	1	1	1	1	AAA	domain
APS_kinase	PF01583.15	gi|408404446|ref|YP_006862429.1|	-	0.073	12.7	0.0	0.14	11.8	0.0	1.4	1	0	0	1	1	1	0	Adenylylsulphate	kinase
YhjQ	PF06564.7	gi|408404446|ref|YP_006862429.1|	-	0.088	12.1	0.2	0.24	10.7	0.2	1.7	2	0	0	2	2	2	0	YhjQ	protein
DUF258	PF03193.11	gi|408404446|ref|YP_006862429.1|	-	0.12	11.5	0.2	0.24	10.6	0.1	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
AAA_19	PF13245.1	gi|408404446|ref|YP_006862429.1|	-	0.75	9.5	4.5	0.66	9.7	0.9	2.3	2	0	0	2	2	2	0	Part	of	AAA	domain
TFIIB	PF00382.14	gi|408404447|ref|YP_006862430.1|	-	2.7e-24	84.7	4.0	9.6e-15	54.1	0.4	2.3	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.7	gi|408404447|ref|YP_006862430.1|	-	2.4e-12	45.9	1.1	2.4e-12	45.9	0.7	1.7	2	0	0	2	2	2	1	TFIIB	zinc-binding
Ribosomal_S27e	PF01667.12	gi|408404447|ref|YP_006862430.1|	-	0.024	14.1	2.0	0.049	13.1	1.4	1.4	1	0	0	1	1	1	0	Ribosomal	protein	S27
DUF778	PF05608.7	gi|408404447|ref|YP_006862430.1|	-	0.03	14.2	0.1	0.061	13.2	0.1	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF778)
DUF3106	PF11304.3	gi|408404447|ref|YP_006862430.1|	-	0.057	13.8	0.1	0.13	12.6	0.1	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3106)
DUF2318	PF10080.4	gi|408404447|ref|YP_006862430.1|	-	0.075	12.8	0.6	0.16	11.7	0.4	1.5	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2318)
DZR	PF12773.2	gi|408404447|ref|YP_006862430.1|	-	0.099	12.4	0.3	0.2	11.4	0.2	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
RHH_1	PF01402.16	gi|408404448|ref|YP_006862431.1|	-	0.00074	19.2	2.0	0.00099	18.9	0.0	2.3	3	0	0	3	3	3	1	Ribbon-helix-helix	protein,	copG	family
RHH_4	PF13467.1	gi|408404448|ref|YP_006862431.1|	-	0.014	15.2	0.0	0.023	14.5	0.0	1.4	1	0	0	1	1	1	0	Ribbon-helix-helix	domain
SHS2_Rpb7-N	PF03876.12	gi|408404449|ref|YP_006862432.1|	-	2.8e-17	62.5	0.0	5e-16	58.5	0.0	2.2	2	0	0	2	2	2	1	SHS2	domain	found	in	N	terminus	of	Rpb7p/Rpc25p/MJ0397
S1	PF00575.18	gi|408404449|ref|YP_006862432.1|	-	4.1e-13	49.2	0.1	7.4e-13	48.3	0.0	1.4	1	0	0	1	1	1	1	S1	RNA	binding	domain
S1_2	PF13509.1	gi|408404449|ref|YP_006862432.1|	-	0.0022	17.8	0.0	0.0036	17.1	0.0	1.4	1	0	0	1	1	1	1	S1	domain
Spt4	PF06093.8	gi|408404450|ref|YP_006862433.1|	-	3.8e-15	55.5	0.2	4.7e-15	55.2	0.1	1.1	1	0	0	1	1	1	1	Spt4/RpoE2	zinc	finger
TF_Zn_Ribbon	PF08271.7	gi|408404450|ref|YP_006862433.1|	-	0.01	15.1	0.6	0.016	14.4	0.0	1.6	2	0	0	2	2	2	0	TFIIB	zinc-binding
RecR	PF02132.10	gi|408404450|ref|YP_006862433.1|	-	0.024	14.0	1.7	0.033	13.6	1.2	1.2	1	0	0	1	1	1	0	RecR	protein
DZR	PF12773.2	gi|408404450|ref|YP_006862433.1|	-	0.031	14.0	1.1	0.047	13.5	0.7	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
Laminin_EGF	PF00053.19	gi|408404450|ref|YP_006862433.1|	-	0.049	13.5	0.9	0.062	13.2	0.6	1.2	1	0	0	1	1	1	0	Laminin	EGF-like	(Domains	III	and	V)
zf-ribbon_3	PF13248.1	gi|408404450|ref|YP_006862433.1|	-	0.055	12.6	0.8	0.23	10.7	0.0	2.0	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-RING_4	PF14570.1	gi|408404450|ref|YP_006862433.1|	-	0.22	11.1	3.5	0.32	10.6	2.5	1.2	1	0	0	1	1	1	0	RING/Ubox	like	zinc-binding	domain
zf-FPG_IleRS	PF06827.9	gi|408404450|ref|YP_006862433.1|	-	0.26	10.9	3.1	4	7.1	0.1	2.2	2	0	0	2	2	2	0	Zinc	finger	found	in	FPG	and	IleRS
QRPTase_C	PF01729.14	gi|408404451|ref|YP_006862434.1|	-	1.8e-54	183.7	0.5	2.7e-54	183.2	0.3	1.3	1	0	0	1	1	1	1	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
QRPTase_N	PF02749.11	gi|408404451|ref|YP_006862434.1|	-	1.3e-26	92.1	0.1	2.4e-26	91.3	0.1	1.4	1	0	0	1	1	1	1	Quinolinate	phosphoribosyl	transferase,	N-terminal	domain
Ribul_P_3_epim	PF00834.14	gi|408404451|ref|YP_006862434.1|	-	0.0022	17.1	0.1	0.0093	15.0	0.0	1.8	1	1	1	2	2	2	1	Ribulose-phosphate	3	epimerase	family
HlyD_2	PF12700.2	gi|408404451|ref|YP_006862434.1|	-	0.0089	15.2	0.0	0.014	14.6	0.0	1.3	1	0	0	1	1	1	1	HlyD	family	secretion	protein
Biotin_lipoyl_2	PF13533.1	gi|408404451|ref|YP_006862434.1|	-	0.037	13.6	0.0	0.1	12.3	0.0	1.7	1	0	0	1	1	1	0	Biotin-lipoyl	like
NadA	PF02445.11	gi|408404452|ref|YP_006862435.1|	-	3.9e-117	390.2	5.9	4.4e-117	390.1	4.1	1.0	1	0	0	1	1	1	1	Quinolinate	synthetase	A	protein
Beta_propel	PF09826.4	gi|408404452|ref|YP_006862435.1|	-	0.077	11.3	0.0	0.1	10.9	0.0	1.1	1	0	0	1	1	1	0	Beta	propeller	domain
Ribosomal_S30	PF04758.9	gi|408404453|ref|YP_006862436.1|	-	1.9e-08	33.9	4.7	2.8e-08	33.3	3.2	1.4	1	1	0	1	1	1	1	Ribosomal	protein	S30
DUF108	PF01958.13	gi|408404454|ref|YP_006862437.1|	-	8.3e-34	115.6	1.0	1.4e-33	114.9	0.7	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF108
NAD_binding_3	PF03447.11	gi|408404454|ref|YP_006862437.1|	-	7.5e-17	61.8	0.1	1.7e-16	60.6	0.0	1.6	2	0	0	2	2	2	1	Homoserine	dehydrogenase,	NAD	binding	domain
Phage_coat	PF09063.5	gi|408404454|ref|YP_006862437.1|	-	0.0052	16.5	0.1	0.0097	15.6	0.0	1.4	1	0	0	1	1	1	1	Phage	PP7	coat	protein
TRAM	PF01938.15	gi|408404455|ref|YP_006862438.1|	-	1.6e-12	47.0	0.9	1.9e-12	46.7	0.6	1.1	1	0	0	1	1	1	1	TRAM	domain
Cupredoxin_1	PF13473.1	gi|408404456|ref|YP_006862439.1|	-	1.7e-06	27.8	0.0	2.3e-06	27.4	0.0	1.3	1	0	0	1	1	1	1	Cupredoxin-like	domain
Copper-bind	PF00127.15	gi|408404456|ref|YP_006862439.1|	-	0.1	12.8	0.0	0.15	12.2	0.0	1.3	1	1	0	1	1	1	0	Copper	binding	proteins,	plastocyanin/azurin	family
TGS	PF02824.16	gi|408404457|ref|YP_006862440.1|	-	4.5e-23	80.8	0.0	1e-22	79.7	0.0	1.6	1	0	0	1	1	1	1	TGS	domain
MMR_HSR1	PF01926.18	gi|408404457|ref|YP_006862440.1|	-	7.8e-20	70.9	0.0	1.8e-19	69.7	0.0	1.6	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
FeoB_N	PF02421.13	gi|408404457|ref|YP_006862440.1|	-	1.5e-16	60.0	0.1	1.9e-13	49.9	0.0	2.2	2	0	0	2	2	2	2	Ferrous	iron	transport	protein	B
GTP_EFTU	PF00009.22	gi|408404457|ref|YP_006862440.1|	-	0.00015	21.2	1.4	0.16	11.3	0.1	3.5	2	1	0	2	2	2	1	Elongation	factor	Tu	GTP	binding	domain
AIG1	PF04548.11	gi|408404457|ref|YP_006862440.1|	-	0.00016	20.9	0.1	0.00032	19.8	0.0	1.5	1	0	0	1	1	1	1	AIG1	family
cobW	PF02492.14	gi|408404457|ref|YP_006862440.1|	-	0.00054	19.4	0.2	0.46	9.8	0.0	2.4	2	0	0	2	2	2	2	CobW/HypB/UreG,	nucleotide-binding	domain
Arf	PF00025.16	gi|408404457|ref|YP_006862440.1|	-	0.00055	19.2	0.2	0.077	12.2	0.0	2.4	2	0	0	2	2	2	1	ADP-ribosylation	factor	family
Dynamin_N	PF00350.18	gi|408404457|ref|YP_006862440.1|	-	0.00055	19.7	0.1	0.44	10.3	0.1	2.5	1	1	1	2	2	2	2	Dynamin	family
Ras	PF00071.17	gi|408404457|ref|YP_006862440.1|	-	0.0012	18.2	0.0	0.47	9.8	0.0	2.5	2	0	0	2	2	2	2	Ras	family
DNA_pol_A	PF00476.15	gi|408404457|ref|YP_006862440.1|	-	0.0019	16.8	0.0	0.0033	16.0	0.0	1.3	1	0	0	1	1	1	1	DNA	polymerase	family	A
SRPRB	PF09439.5	gi|408404457|ref|YP_006862440.1|	-	0.0022	17.2	0.0	0.005	16.0	0.0	1.5	1	0	0	1	1	1	1	Signal	recognition	particle	receptor	beta	subunit
DUF258	PF03193.11	gi|408404457|ref|YP_006862440.1|	-	0.0052	15.9	0.1	0.016	14.4	0.0	1.8	2	0	0	2	2	2	1	Protein	of	unknown	function,	DUF258
Miro	PF08477.8	gi|408404457|ref|YP_006862440.1|	-	0.009	16.5	0.0	0.028	14.8	0.0	1.9	1	0	0	1	1	1	1	Miro-like	protein
AAA_22	PF13401.1	gi|408404457|ref|YP_006862440.1|	-	0.019	15.0	0.1	0.12	12.5	0.0	2.2	1	1	1	2	2	2	0	AAA	domain
MCM	PF00493.18	gi|408404457|ref|YP_006862440.1|	-	0.027	13.2	0.0	0.043	12.6	0.0	1.2	1	0	0	1	1	1	0	MCM2/3/5	family
ArgK	PF03308.11	gi|408404457|ref|YP_006862440.1|	-	0.035	12.8	0.0	0.091	11.5	0.0	1.7	1	0	0	1	1	1	0	ArgK	protein
AAA_28	PF13521.1	gi|408404457|ref|YP_006862440.1|	-	0.036	14.0	0.1	0.077	12.9	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_33	PF13671.1	gi|408404457|ref|YP_006862440.1|	-	0.093	12.6	0.0	0.18	11.6	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
DDE_Tnp_IS1595	PF12762.2	gi|408404458|ref|YP_006862441.1|	-	0.00018	21.3	0.0	0.00026	20.8	0.0	1.4	1	0	0	1	1	1	1	ISXO2-like	transposase	domain
EamA	PF00892.15	gi|408404460|ref|YP_006862443.1|	-	1.5e-13	50.8	34.2	5.9e-07	29.5	5.0	2.2	2	0	0	2	2	2	2	EamA-like	transporter	family
Herpes_MCP	PF03122.9	gi|408404461|ref|YP_006862444.1|	-	0.028	11.7	0.0	0.029	11.7	0.0	1.0	1	0	0	1	1	1	0	Herpes	virus	major	capsid	protein
DUF3273	PF11677.3	gi|408404461|ref|YP_006862444.1|	-	0.049	12.8	0.4	0.054	12.7	0.3	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3273)
DUF3175	PF11373.3	gi|408404463|ref|YP_006862446.1|	-	7.8e-11	41.8	0.3	1.3e-10	41.1	0.2	1.4	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF3175)
Mu-like_Com	PF10122.4	gi|408404465|ref|YP_006862448.1|	-	0.13	11.3	0.0	0.19	10.8	0.0	1.3	1	0	0	1	1	1	0	Mu-like	prophage	protein	Com
tRNA_int_endo	PF01974.12	gi|408404466|ref|YP_006862449.1|	-	1.9e-19	69.2	0.2	3.6e-19	68.3	0.1	1.4	1	0	0	1	1	1	1	tRNA	intron	endonuclease,	catalytic	C-terminal	domain
tRNA_int_endo_N	PF02778.9	gi|408404466|ref|YP_006862449.1|	-	4.2e-07	29.4	0.0	8.6e-07	28.4	0.0	1.5	1	0	0	1	1	1	1	tRNA	intron	endonuclease,	N-terminal	domain
tRNA_int_end_N2	PF12928.2	gi|408404466|ref|YP_006862449.1|	-	0.039	13.4	0.0	0.088	12.2	0.0	1.5	1	0	0	1	1	1	0	tRNA-splicing	endonuclease	subunit	sen54	N-term
Ribosomal_L16	PF00252.13	gi|408404467|ref|YP_006862450.1|	-	3e-28	98.2	0.2	3.4e-28	98.0	0.1	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L16p/L10e
Sda	PF08970.5	gi|408404467|ref|YP_006862450.1|	-	0.11	12.0	0.0	0.21	11.0	0.0	1.4	1	0	0	1	1	1	0	Sporulation	inhibitor	A
DUF929	PF06053.6	gi|408404468|ref|YP_006862451.1|	-	1.6e-24	86.3	0.0	6.8e-23	81.0	0.0	2.0	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF929)
DUF2674	PF10879.3	gi|408404468|ref|YP_006862451.1|	-	0.064	12.9	0.0	0.17	11.6	0.0	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2674)
HTH_Tnp_Tc3_1	PF11427.3	gi|408404469|ref|YP_006862452.1|	-	0.012	15.2	0.0	0.016	14.8	0.0	1.2	1	0	0	1	1	1	0	Tc3	transposase
Occludin_ELL	PF07303.8	gi|408404469|ref|YP_006862452.1|	-	0.015	15.9	0.4	0.017	15.8	0.3	1.1	1	0	0	1	1	1	0	Occludin	homology	domain
TMF_TATA_bd	PF12325.3	gi|408404469|ref|YP_006862452.1|	-	0.049	13.3	1.5	0.054	13.2	1.1	1.1	1	0	0	1	1	1	0	TATA	element	modulatory	factor	1	TATA	binding
CM_2	PF01817.16	gi|408404469|ref|YP_006862452.1|	-	0.067	13.2	0.5	0.088	12.9	0.3	1.3	1	1	0	1	1	1	0	Chorismate	mutase	type	II
PhoU_div	PF01865.11	gi|408404469|ref|YP_006862452.1|	-	0.096	11.8	0.1	0.098	11.8	0.0	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	DUF47
Imm31	PF15595.1	gi|408404469|ref|YP_006862452.1|	-	0.1	12.3	0.1	0.11	12.2	0.1	1.1	1	0	0	1	1	1	0	Immunity	protein	31
F_actin_cap_B	PF01115.12	gi|408404469|ref|YP_006862452.1|	-	0.12	11.5	0.3	0.14	11.3	0.2	1.0	1	0	0	1	1	1	0	F-actin	capping	protein,	beta	subunit
Chordopox_A15	PF05846.7	gi|408404470|ref|YP_006862453.1|	-	0.13	12.3	0.0	0.15	12.1	0.0	1.2	1	0	0	1	1	1	0	Chordopoxvirus	A15	protein
Arginase	PF00491.16	gi|408404473|ref|YP_006862456.1|	-	2.5e-11	43.4	0.0	2.8e-11	43.2	0.0	1.0	1	0	0	1	1	1	1	Arginase	family
PS-DH	PF14765.1	gi|408404474|ref|YP_006862457.1|	-	0.13	11.3	0.1	0.16	11.1	0.1	1.0	1	0	0	1	1	1	0	Polyketide	synthase	dehydratase
Cation_efflux	PF01545.16	gi|408404475|ref|YP_006862458.1|	-	4.8e-40	137.4	5.8	5.6e-40	137.2	4.0	1.0	1	0	0	1	1	1	1	Cation	efflux	family
DUF485	PF04341.7	gi|408404475|ref|YP_006862458.1|	-	0.082	12.6	2.0	0.68	9.6	0.2	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function,	DUF485
DUF2627	PF11118.3	gi|408404475|ref|YP_006862458.1|	-	1.1	9.4	5.3	1.2	9.2	0.1	2.9	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF2627)
PGK	PF00162.14	gi|408404476|ref|YP_006862459.1|	-	5.5e-129	430.0	0.0	6.2e-129	429.9	0.0	1.0	1	0	0	1	1	1	1	Phosphoglycerate	kinase
SGL	PF08450.7	gi|408404478|ref|YP_006862461.1|	-	5.4e-08	32.5	0.2	0.026	13.9	0.0	4.6	5	0	0	5	5	5	3	SMP-30/Gluconolaconase/LRE-like	region
NHL	PF01436.16	gi|408404478|ref|YP_006862461.1|	-	3.4e-05	23.5	1.2	0.0076	16.1	0.1	4.0	5	0	0	5	5	5	1	NHL	repeat
B_lectin	PF01453.19	gi|408404478|ref|YP_006862461.1|	-	0.0019	18.0	0.7	0.04	13.8	0.2	2.7	2	1	0	2	2	2	1	D-mannose	binding	lectin
DUF1034	PF06280.7	gi|408404478|ref|YP_006862461.1|	-	0.12	12.8	0.0	2.6	8.4	0.0	2.5	1	1	1	2	2	2	0	Fn3-like	domain	(DUF1034)
Reg_prop	PF07494.6	gi|408404478|ref|YP_006862461.1|	-	5.3	7.4	9.4	45	4.5	0.0	5.2	6	0	0	6	6	6	0	Two	component	regulator	propeller
EamA	PF00892.15	gi|408404479|ref|YP_006862462.1|	-	2.5e-36	124.4	33.8	7.1e-19	68.0	9.0	2.1	2	0	0	2	2	2	2	EamA-like	transporter	family
EmrE	PF13536.1	gi|408404479|ref|YP_006862462.1|	-	9.3e-11	41.9	27.6	5.1e-06	26.6	4.3	2.8	2	1	0	2	2	2	2	Multidrug	resistance	efflux	transporter
UPF0546	PF10639.4	gi|408404479|ref|YP_006862462.1|	-	0.073	12.8	0.4	0.073	12.8	0.3	3.7	3	1	1	4	4	4	0	Uncharacterised	protein	family	UPF0546
TPT	PF03151.11	gi|408404479|ref|YP_006862462.1|	-	0.4	10.3	28.1	0.12	11.9	8.1	3.0	2	1	0	2	2	2	0	Triose-phosphate	Transporter	family
PTH2	PF01981.11	gi|408404480|ref|YP_006862463.1|	-	1e-43	147.6	0.1	1.1e-43	147.5	0.1	1.0	1	0	0	1	1	1	1	Peptidyl-tRNA	hydrolase	PTH2
PhnG	PF06754.7	gi|408404480|ref|YP_006862463.1|	-	0.034	13.7	0.1	0.041	13.4	0.1	1.1	1	0	0	1	1	1	0	Phosphonate	metabolism	protein	PhnG
FAD_binding_3	PF01494.14	gi|408404481|ref|YP_006862464.1|	-	1.1e-08	34.5	4.6	0.001	18.2	1.5	2.9	2	1	0	2	2	2	2	FAD	binding	domain
DAO	PF01266.19	gi|408404481|ref|YP_006862464.1|	-	4.8e-06	25.7	5.7	0.026	13.4	0.0	2.5	1	1	1	2	2	2	2	FAD	dependent	oxidoreductase
FAD_oxidored	PF12831.2	gi|408404481|ref|YP_006862464.1|	-	2.2e-05	23.7	1.0	2.8e-05	23.3	0.3	1.6	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
HI0933_like	PF03486.9	gi|408404481|ref|YP_006862464.1|	-	6.8e-05	21.5	0.5	0.0027	16.2	0.2	2.2	2	0	0	2	2	2	1	HI0933-like	protein
Thi4	PF01946.12	gi|408404481|ref|YP_006862464.1|	-	0.0016	17.5	1.7	0.0036	16.4	1.2	1.5	1	0	0	1	1	1	1	Thi4	family
FAD_binding_2	PF00890.19	gi|408404481|ref|YP_006862464.1|	-	0.0022	16.9	3.6	0.0044	15.9	2.5	1.5	1	0	0	1	1	1	1	FAD	binding	domain
Lycopene_cycl	PF05834.7	gi|408404481|ref|YP_006862464.1|	-	0.01	14.7	2.5	1.7	7.4	0.0	2.6	3	0	0	3	3	3	0	Lycopene	cyclase	protein
Pyr_redox_2	PF07992.9	gi|408404481|ref|YP_006862464.1|	-	0.015	15.1	0.4	0.039	13.8	0.1	1.8	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.1	gi|408404481|ref|YP_006862464.1|	-	0.15	12.1	4.4	0.1	12.6	0.8	2.5	3	0	0	3	3	3	0	NAD(P)-binding	Rossmann-like	domain
DUF1610	PF07754.6	gi|408404482|ref|YP_006862465.1|	-	8.1e-05	22.6	5.5	8.1e-05	22.6	3.8	2.4	2	1	0	2	2	2	1	Domain	of	unknown	function	(DUF1610)
zf-ribbon_3	PF13248.1	gi|408404482|ref|YP_006862465.1|	-	0.022	13.9	0.2	0.022	13.9	0.1	3.1	4	0	0	4	4	4	0	zinc-ribbon	domain
DZR	PF12773.2	gi|408404482|ref|YP_006862465.1|	-	0.2	11.5	12.7	1.8	8.4	8.8	2.4	1	1	0	1	1	1	0	Double	zinc	ribbon
UPF0547	PF10571.4	gi|408404482|ref|YP_006862465.1|	-	0.21	11.2	0.4	0.21	11.2	0.3	2.7	2	1	1	3	3	3	0	Uncharacterised	protein	family	UPF0547
DUF2321	PF10083.4	gi|408404482|ref|YP_006862465.1|	-	0.26	10.7	2.2	0.28	10.6	1.5	1.2	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2321)
C1_1	PF00130.17	gi|408404482|ref|YP_006862465.1|	-	0.36	10.5	10.4	0.39	10.4	2.1	2.3	1	1	1	2	2	2	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
PolC_DP2	PF03833.8	gi|408404482|ref|YP_006862465.1|	-	0.72	7.4	6.3	0.78	7.3	4.3	1.0	1	0	0	1	1	1	0	DNA	polymerase	II	large	subunit	DP2
IBR	PF01485.16	gi|408404482|ref|YP_006862465.1|	-	0.78	9.6	11.4	1.7	8.5	8.0	1.6	1	1	0	1	1	1	0	IBR	domain
zf-NADH-PPase	PF09297.6	gi|408404482|ref|YP_006862465.1|	-	2.2	7.8	7.1	6	6.4	0.1	3.1	3	0	0	3	3	3	0	NADH	pyrophosphatase	zinc	ribbon	domain
zf-B_box	PF00643.19	gi|408404482|ref|YP_006862465.1|	-	3.1	7.7	13.8	5.1	7.0	4.4	2.7	1	1	1	2	2	2	0	B-box	zinc	finger
Spt4	PF06093.8	gi|408404482|ref|YP_006862465.1|	-	6	6.8	8.5	14	5.6	5.9	1.7	1	1	0	1	1	1	0	Spt4/RpoE2	zinc	finger
zinc_ribbon_2	PF13240.1	gi|408404482|ref|YP_006862465.1|	-	6.9	6.2	11.9	5.1	6.7	4.3	3.0	2	1	0	2	2	2	0	zinc-ribbon	domain
Tnp_zf-ribbon_2	PF13842.1	gi|408404482|ref|YP_006862465.1|	-	7.2	7.1	12.5	1.4e+02	3.0	8.6	2.2	1	1	0	1	1	1	0	DDE_Tnp_1-like	zinc-ribbon
EF1_GNE	PF00736.14	gi|408404483|ref|YP_006862466.1|	-	3.1e-20	71.6	0.2	3.3e-20	71.5	0.1	1.0	1	0	0	1	1	1	1	EF-1	guanine	nucleotide	exchange	domain
AAA	PF00004.24	gi|408404484|ref|YP_006862467.1|	-	4.8e-91	301.8	0.0	5.4e-47	159.2	0.0	2.8	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
CDC48_N	PF02359.13	gi|408404484|ref|YP_006862467.1|	-	2.8e-26	91.2	0.5	1e-25	89.4	0.4	2.0	1	0	0	1	1	1	1	Cell	division	protein	48	(CDC48),	N-terminal	domain
AAA_2	PF07724.9	gi|408404484|ref|YP_006862467.1|	-	4.6e-14	52.6	0.0	1.5e-07	31.4	0.0	2.4	2	0	0	2	2	2	2	AAA	domain	(Cdc48	subfamily)
RuvB_N	PF05496.7	gi|408404484|ref|YP_006862467.1|	-	1.5e-13	50.3	0.1	1.4e-06	27.5	0.0	2.7	3	0	0	3	3	2	2	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_16	PF13191.1	gi|408404484|ref|YP_006862467.1|	-	2.9e-13	50.2	0.0	2.4e-05	24.3	0.0	3.0	2	1	0	2	2	2	2	AAA	ATPase	domain
AAA_22	PF13401.1	gi|408404484|ref|YP_006862467.1|	-	3.6e-13	49.7	0.1	0.00039	20.5	0.0	4.5	2	2	0	2	2	2	2	AAA	domain
AAA_5	PF07728.9	gi|408404484|ref|YP_006862467.1|	-	4.4e-13	49.1	0.2	0.00018	21.2	0.0	4.7	3	2	0	3	3	3	2	AAA	domain	(dynein-related	subfamily)
AAA_14	PF13173.1	gi|408404484|ref|YP_006862467.1|	-	1.4e-11	44.3	0.0	2.9e-06	27.2	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
AAA_25	PF13481.1	gi|408404484|ref|YP_006862467.1|	-	1.3e-10	40.9	3.7	0.0014	18.0	0.1	4.5	2	2	2	4	4	4	2	AAA	domain
AAA_17	PF13207.1	gi|408404484|ref|YP_006862467.1|	-	1.6e-10	41.8	0.0	0.0005	20.8	0.0	2.9	2	0	0	2	2	2	2	AAA	domain
AAA_33	PF13671.1	gi|408404484|ref|YP_006862467.1|	-	1.1e-09	38.3	0.0	0.00093	19.0	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
AAA_28	PF13521.1	gi|408404484|ref|YP_006862467.1|	-	2.2e-08	34.2	0.0	0.0075	16.2	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
Zeta_toxin	PF06414.7	gi|408404484|ref|YP_006862467.1|	-	4.2e-08	32.5	0.0	0.0012	17.9	0.0	2.5	2	0	0	2	2	2	2	Zeta	toxin
RNA_helicase	PF00910.17	gi|408404484|ref|YP_006862467.1|	-	7.8e-08	32.4	0.0	0.015	15.4	0.0	2.6	2	0	0	2	2	2	2	RNA	helicase
IstB_IS21	PF01695.12	gi|408404484|ref|YP_006862467.1|	-	8.5e-08	31.8	0.1	0.0025	17.2	0.0	2.4	2	0	0	2	2	2	2	IstB-like	ATP	binding	protein
TIP49	PF06068.8	gi|408404484|ref|YP_006862467.1|	-	2e-07	30.0	0.0	0.0097	14.6	0.0	2.5	2	0	0	2	2	2	2	TIP49	C-terminus
KaiC	PF06745.8	gi|408404484|ref|YP_006862467.1|	-	2.5e-07	30.0	0.1	0.012	14.7	0.0	3.4	2	1	1	3	3	3	2	KaiC
Mg_chelatase	PF01078.16	gi|408404484|ref|YP_006862467.1|	-	3.1e-07	29.7	0.5	0.017	14.2	0.1	2.4	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
Arch_ATPase	PF01637.13	gi|408404484|ref|YP_006862467.1|	-	3.3e-07	30.2	0.0	0.011	15.4	0.0	3.5	2	1	1	3	3	3	1	Archaeal	ATPase
AAA_18	PF13238.1	gi|408404484|ref|YP_006862467.1|	-	6.6e-07	29.6	0.0	0.058	13.7	0.0	2.7	2	0	0	2	2	2	2	AAA	domain
ABC_tran	PF00005.22	gi|408404484|ref|YP_006862467.1|	-	2.4e-06	27.8	0.0	0.13	12.6	0.0	3.1	3	0	0	3	3	2	2	ABC	transporter
CDC48_2	PF02933.12	gi|408404484|ref|YP_006862467.1|	-	4.8e-06	26.1	0.1	1.1e-05	24.9	0.1	1.6	1	0	0	1	1	1	1	Cell	division	protein	48	(CDC48),	domain	2
Sigma54_activ_2	PF14532.1	gi|408404484|ref|YP_006862467.1|	-	6.4e-06	26.2	0.0	0.14	12.2	0.0	2.6	2	0	0	2	2	2	2	Sigma-54	interaction	domain
AAA_19	PF13245.1	gi|408404484|ref|YP_006862467.1|	-	8.9e-06	25.3	0.6	0.026	14.2	0.1	2.9	2	0	0	2	2	2	2	Part	of	AAA	domain
ATP-synt_ab	PF00006.20	gi|408404484|ref|YP_006862467.1|	-	1.3e-05	24.7	0.0	0.07	12.6	0.0	2.3	2	0	0	2	2	2	2	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
DUF2075	PF09848.4	gi|408404484|ref|YP_006862467.1|	-	1.4e-05	24.2	0.0	0.086	11.8	0.0	2.9	2	1	0	2	2	2	2	Uncharacterized	conserved	protein	(DUF2075)
Sigma54_activat	PF00158.21	gi|408404484|ref|YP_006862467.1|	-	2.4e-05	23.8	0.1	0.4	10.1	0.0	3.5	3	1	0	3	3	3	2	Sigma-54	interaction	domain
AAA_24	PF13479.1	gi|408404484|ref|YP_006862467.1|	-	3.7e-05	23.4	0.2	0.055	13.0	0.0	2.6	2	0	0	2	2	2	2	AAA	domain
NACHT	PF05729.7	gi|408404484|ref|YP_006862467.1|	-	3.9e-05	23.3	0.3	1	8.9	0.0	3.8	4	0	0	4	4	3	1	NACHT	domain
PhoH	PF02562.11	gi|408404484|ref|YP_006862467.1|	-	0.00011	21.5	1.7	0.21	10.8	0.0	3.3	2	1	1	3	3	3	2	PhoH-like	protein
DUF815	PF05673.8	gi|408404484|ref|YP_006862467.1|	-	0.00014	20.8	0.0	0.29	10.0	0.0	2.3	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF815)
Viral_helicase1	PF01443.13	gi|408404484|ref|YP_006862467.1|	-	0.00016	21.2	0.0	0.64	9.4	0.0	2.3	2	0	0	2	2	2	2	Viral	(Superfamily	1)	RNA	helicase
Parvo_NS1	PF01057.12	gi|408404484|ref|YP_006862467.1|	-	0.00027	19.8	0.1	0.37	9.6	0.0	2.3	2	0	0	2	2	2	2	Parvovirus	non-structural	protein	NS1
AAA_3	PF07726.6	gi|408404484|ref|YP_006862467.1|	-	0.00032	20.3	0.0	0.56	9.8	0.0	2.7	2	1	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
ResIII	PF04851.10	gi|408404484|ref|YP_006862467.1|	-	0.00048	20.0	0.0	0.4	10.4	0.0	2.3	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
Bac_DnaA	PF00308.13	gi|408404484|ref|YP_006862467.1|	-	0.00082	19.0	0.0	0.28	10.8	0.0	2.7	2	0	0	2	2	2	1	Bacterial	dnaA	protein
SKI	PF01202.17	gi|408404484|ref|YP_006862467.1|	-	0.0012	18.7	0.1	1.6	8.5	0.0	3.2	3	0	0	3	3	3	1	Shikimate	kinase
DAP3	PF10236.4	gi|408404484|ref|YP_006862467.1|	-	0.016	14.1	0.0	2.4	6.9	0.0	2.2	2	0	0	2	2	2	0	Mitochondrial	ribosomal	death-associated	protein	3
T2SE	PF00437.15	gi|408404484|ref|YP_006862467.1|	-	0.019	13.8	0.2	6.1	5.6	0.0	3.3	2	1	0	2	2	2	0	Type	II/IV	secretion	system	protein
KTI12	PF08433.5	gi|408404484|ref|YP_006862467.1|	-	0.024	13.8	0.0	6	5.9	0.0	2.4	2	0	0	2	2	2	0	Chromatin	associated	protein	KTI12
UPF0079	PF02367.12	gi|408404484|ref|YP_006862467.1|	-	0.034	13.7	0.0	6.9	6.3	0.0	2.5	2	0	0	2	2	2	0	Uncharacterised	P-loop	hydrolase	UPF0079
Rad17	PF03215.10	gi|408404484|ref|YP_006862467.1|	-	0.041	12.5	0.0	5.5	5.5	0.0	2.6	2	1	1	3	3	3	0	Rad17	cell	cycle	checkpoint	protein
NB-ARC	PF00931.17	gi|408404484|ref|YP_006862467.1|	-	0.042	12.7	0.0	5.2	5.8	0.0	2.3	2	0	0	2	2	2	0	NB-ARC	domain
AAA_11	PF13086.1	gi|408404484|ref|YP_006862467.1|	-	0.059	12.9	0.0	1.4	8.4	0.0	2.4	2	0	0	2	2	2	0	AAA	domain
SRPRB	PF09439.5	gi|408404484|ref|YP_006862467.1|	-	0.12	11.6	0.0	15	4.7	0.0	2.6	2	0	0	2	2	2	0	Signal	recognition	particle	receptor	beta	subunit
IPT	PF01745.11	gi|408404484|ref|YP_006862467.1|	-	0.14	11.2	0.1	1.1	8.3	0.0	2.2	2	0	0	2	2	2	0	Isopentenyl	transferase
AAA_21	PF13304.1	gi|408404484|ref|YP_006862467.1|	-	0.17	11.7	1.4	7	6.5	0.0	3.1	2	1	1	3	3	3	0	AAA	domain
AAA_10	PF12846.2	gi|408404484|ref|YP_006862467.1|	-	0.17	11.2	1.0	22	4.3	0.0	3.8	2	2	1	3	3	3	0	AAA-like	domain
NTPase_1	PF03266.10	gi|408404484|ref|YP_006862467.1|	-	0.33	10.6	2.8	39	3.9	0.0	4.0	3	2	1	4	4	4	0	NTPase
NEAT	PF05031.7	gi|408404485|ref|YP_006862468.1|	-	0.094	12.7	0.9	12	5.9	0.1	2.9	1	1	1	2	2	2	0	Iron	Transport-associated	domain
UbiA	PF01040.13	gi|408404487|ref|YP_006862470.1|	-	4.2e-31	108.0	28.2	5.8e-31	107.6	19.5	1.2	1	0	0	1	1	1	1	UbiA	prenyltransferase	family
PepSY_TM_3	PF13706.1	gi|408404487|ref|YP_006862470.1|	-	4.2	6.8	16.0	14	5.1	0.4	3.9	3	0	0	3	3	3	0	PepSY-associated	TM	helix
Microvir_H	PF04687.7	gi|408404489|ref|YP_006862472.1|	-	0.028	13.4	3.2	0.23	10.4	0.1	2.2	2	0	0	2	2	2	0	Microvirus	H	protein	(pilot	protein)
NPV_P10	PF05531.7	gi|408404489|ref|YP_006862472.1|	-	0.039	14.2	0.1	0.078	13.2	0.1	1.4	1	0	0	1	1	1	0	Nucleopolyhedrovirus	P10	protein
DegS	PF05384.6	gi|408404489|ref|YP_006862472.1|	-	0.042	13.0	1.8	0.25	10.5	0.4	2.0	2	0	0	2	2	2	0	Sensor	protein	DegS
DUF3300	PF11737.3	gi|408404489|ref|YP_006862472.1|	-	0.047	12.9	2.2	0.054	12.7	0.2	1.8	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3300)
Tmemb_cc2	PF10267.4	gi|408404489|ref|YP_006862472.1|	-	0.076	11.5	0.4	0.11	11.0	0.2	1.3	1	1	0	1	1	1	0	Predicted	transmembrane	and	coiled-coil	2	protein
DUF1100	PF06500.6	gi|408404489|ref|YP_006862472.1|	-	0.079	11.5	1.4	0.092	11.2	1.0	1.1	1	0	0	1	1	1	0	Alpha/beta	hydrolase	of	unknown	function	(DUF1100)
Chlorosome_CsmC	PF11098.3	gi|408404489|ref|YP_006862472.1|	-	0.11	12.2	1.6	4.2	7.0	0.2	2.4	2	0	0	2	2	2	0	Chlorosome	envelope	protein	C
Ribosomal_60s	PF00428.14	gi|408404489|ref|YP_006862472.1|	-	0.11	12.8	3.7	0.22	11.9	2.6	1.5	1	0	0	1	1	1	0	60s	Acidic	ribosomal	protein
DUF883	PF05957.8	gi|408404489|ref|YP_006862472.1|	-	0.22	11.9	8.6	1.7	9.0	0.9	2.9	2	1	1	3	3	3	0	Bacterial	protein	of	unknown	function	(DUF883)
DUF2664	PF10867.3	gi|408404489|ref|YP_006862472.1|	-	0.41	11.3	6.4	4	8.1	0.1	2.7	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2664)
Myosin_tail_1	PF01576.14	gi|408404489|ref|YP_006862472.1|	-	0.59	7.7	6.1	0.071	10.8	1.6	1.3	2	0	0	2	2	2	0	Myosin	tail
Atg14	PF10186.4	gi|408404489|ref|YP_006862472.1|	-	0.61	8.9	3.4	0.86	8.4	2.4	1.2	1	0	0	1	1	1	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
IncA	PF04156.9	gi|408404489|ref|YP_006862472.1|	-	0.85	9.1	3.9	1.3	8.5	2.7	1.3	1	0	0	1	1	1	0	IncA	protein
Syntaxin_2	PF14523.1	gi|408404489|ref|YP_006862472.1|	-	0.99	9.4	3.8	1.3	9.0	1.3	1.9	2	0	0	2	2	2	0	Syntaxin-like	protein
TBPIP	PF07106.8	gi|408404489|ref|YP_006862472.1|	-	1.3	8.5	3.7	0.47	9.9	0.9	1.4	2	0	0	2	2	2	0	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
phiKZ_IP	PF12699.2	gi|408404489|ref|YP_006862472.1|	-	1.5	7.6	7.1	0.19	10.6	1.1	1.9	2	0	0	2	2	2	0	phiKZ-like	phage	internal	head	proteins
ADIP	PF11559.3	gi|408404489|ref|YP_006862472.1|	-	2.6	7.9	6.3	1	9.2	2.7	1.5	2	0	0	2	2	2	0	Afadin-	and	alpha	-actinin-Binding
APG6	PF04111.7	gi|408404489|ref|YP_006862472.1|	-	2.6	6.9	4.6	0.88	8.5	1.6	1.3	2	0	0	2	2	2	0	Autophagy	protein	Apg6
DUF2795	PF11387.3	gi|408404490|ref|YP_006862473.1|	-	3.1e-07	30.1	0.0	5.9e-07	29.2	0.0	1.5	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF2795)
Glu-tRNAGln	PF02686.10	gi|408404490|ref|YP_006862473.1|	-	0.12	12.1	0.3	0.49	10.2	0.0	2.0	2	0	0	2	2	2	0	Glu-tRNAGln	amidotransferase	C	subunit
PRC	PF05239.11	gi|408404491|ref|YP_006862474.1|	-	0.0024	17.7	0.0	0.0035	17.1	0.0	1.3	1	0	0	1	1	1	1	PRC-barrel	domain
zf-C2H2	PF00096.21	gi|408404491|ref|YP_006862474.1|	-	0.088	13.1	0.1	0.15	12.4	0.1	1.4	1	0	0	1	1	1	0	Zinc	finger,	C2H2	type
Copper-bind	PF00127.15	gi|408404492|ref|YP_006862475.1|	-	2.2e-17	63.0	0.8	6.6e-08	32.6	0.2	2.8	2	1	0	2	2	2	2	Copper	binding	proteins,	plastocyanin/azurin	family
Cupredoxin_1	PF13473.1	gi|408404492|ref|YP_006862475.1|	-	1.2e-13	50.8	0.0	1.8e-06	27.7	0.0	2.5	2	1	0	2	2	2	2	Cupredoxin-like	domain
MerC	PF03203.9	gi|408404492|ref|YP_006862475.1|	-	0.22	11.8	8.7	0.61	10.4	0.8	2.5	1	1	1	2	2	2	0	MerC	mercury	resistance	protein
PrgI	PF12666.2	gi|408404492|ref|YP_006862475.1|	-	4.8	7.3	15.5	0.32	11.1	4.3	2.5	2	1	0	2	2	2	0	PrgI	family	protein
Prok-JAB	PF14464.1	gi|408404493|ref|YP_006862476.1|	-	1.6e-17	62.9	0.0	1.9e-17	62.7	0.0	1.1	1	0	0	1	1	1	1	Prokaryotic	homologs	of	the	JAB	domain
JAB	PF01398.16	gi|408404493|ref|YP_006862476.1|	-	2.7e-05	23.8	0.0	4e-05	23.3	0.0	1.4	1	1	0	1	1	1	1	JAB1/Mov34/MPN/PAD-1	ubiquitin	protease
tRNA-synt_2	PF00152.15	gi|408404494|ref|YP_006862477.1|	-	1e-86	290.7	0.0	1.4e-86	290.3	0.0	1.2	1	0	0	1	1	1	1	tRNA	synthetases	class	II	(D,	K	and	N)
tRNA_anti-codon	PF01336.20	gi|408404494|ref|YP_006862477.1|	-	6.4e-10	38.7	1.8	1.3e-09	37.7	1.3	1.5	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
tRNA-synt_2d	PF01409.15	gi|408404494|ref|YP_006862477.1|	-	0.00018	20.7	0.4	0.045	12.9	0.0	2.4	2	0	0	2	2	2	2	tRNA	synthetases	class	II	core	domain	(F)
tRNA-synt_2b	PF00587.20	gi|408404494|ref|YP_006862477.1|	-	0.13	11.8	0.0	0.26	10.8	0.0	1.4	1	0	0	1	1	1	0	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
KH_5	PF13184.1	gi|408404495|ref|YP_006862478.1|	-	3.3e-06	26.7	0.4	1.1e-05	25.1	0.0	2.0	2	0	0	2	2	2	1	NusA-like	KH	domain
Response_reg	PF00072.19	gi|408404496|ref|YP_006862479.1|	-	1.4e-06	28.2	0.0	1.9e-06	27.8	0.0	1.2	1	0	0	1	1	1	1	Response	regulator	receiver	domain
ABC_tran	PF00005.22	gi|408404497|ref|YP_006862480.1|	-	2.7e-28	98.9	0.0	4e-28	98.4	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.7	gi|408404497|ref|YP_006862480.1|	-	4.3e-22	78.2	0.2	7.5e-22	77.4	0.1	1.4	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.1	gi|408404497|ref|YP_006862480.1|	-	1.2e-13	51.6	0.7	2.3e-11	44.1	0.1	2.2	1	1	1	2	2	2	2	AAA	domain
AAA_15	PF13175.1	gi|408404497|ref|YP_006862480.1|	-	3e-05	23.2	0.1	0.00013	21.1	0.1	1.8	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.1	gi|408404497|ref|YP_006862480.1|	-	0.0015	18.6	1.0	0.013	15.6	0.7	2.1	1	1	0	1	1	1	1	AAA	domain
SMC_N	PF02463.14	gi|408404497|ref|YP_006862480.1|	-	0.0016	17.7	0.8	0.0095	15.1	0.5	2.0	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_25	PF13481.1	gi|408404497|ref|YP_006862480.1|	-	0.0054	16.1	0.0	3	7.2	0.0	2.3	2	0	0	2	2	2	2	AAA	domain
ABC_ATPase	PF09818.4	gi|408404497|ref|YP_006862480.1|	-	0.0059	15.2	0.3	0.31	9.5	0.1	2.4	2	1	0	2	2	2	1	Predicted	ATPase	of	the	ABC	class
AAA_18	PF13238.1	gi|408404497|ref|YP_006862480.1|	-	0.012	15.8	0.0	0.071	13.4	0.0	2.1	1	1	0	1	1	1	0	AAA	domain
AAA_29	PF13555.1	gi|408404497|ref|YP_006862480.1|	-	0.015	14.8	0.0	0.029	13.8	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.1	gi|408404497|ref|YP_006862480.1|	-	0.05	13.5	0.1	0.089	12.7	0.1	1.6	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_10	PF12846.2	gi|408404497|ref|YP_006862480.1|	-	0.13	11.7	0.4	11	5.3	0.0	2.2	1	1	0	2	2	2	0	AAA-like	domain
PRK	PF00485.13	gi|408404497|ref|YP_006862480.1|	-	0.15	11.5	0.0	0.27	10.7	0.0	1.3	1	0	0	1	1	1	0	Phosphoribulokinase	/	Uridine	kinase	family
AAA	PF00004.24	gi|408404497|ref|YP_006862480.1|	-	0.16	12.1	0.4	1.8	8.7	0.3	2.3	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF258	PF03193.11	gi|408404497|ref|YP_006862480.1|	-	0.28	10.3	0.9	0.34	10.1	0.0	1.6	2	0	0	2	2	2	0	Protein	of	unknown	function,	DUF258
Ion_trans	PF00520.26	gi|408404498|ref|YP_006862481.1|	-	8.4e-39	132.8	14.3	1.3e-38	132.3	9.9	1.3	1	0	0	1	1	1	1	Ion	transport	protein
PKD_channel	PF08016.7	gi|408404498|ref|YP_006862481.1|	-	2e-11	43.0	8.9	9.2e-10	37.5	5.4	2.1	1	1	1	2	2	2	2	Polycystin	cation	channel
IncA	PF04156.9	gi|408404498|ref|YP_006862481.1|	-	0.028	14.0	0.0	0.028	14.0	0.0	1.9	2	0	0	2	2	2	0	IncA	protein
Zn_peptidase_2	PF04298.7	gi|408404498|ref|YP_006862481.1|	-	0.039	13.3	2.1	0.94	8.7	0.0	2.5	2	0	0	2	2	2	0	Putative	neutral	zinc	metallopeptidase
RPAP3_C	PF13877.1	gi|408404498|ref|YP_006862481.1|	-	0.12	12.3	0.1	1.3	9.0	0.1	2.3	2	0	0	2	2	2	0	Potential	Monad-binding	region	of	RPAP3
DUF4446	PF14584.1	gi|408404498|ref|YP_006862481.1|	-	0.18	11.6	0.1	0.18	11.6	0.0	2.0	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF4446)
DUF4032	PF13224.1	gi|408404499|ref|YP_006862482.1|	-	0.057	13.1	0.0	0.057	13.1	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4032)
XPA_N	PF01286.13	gi|408404500|ref|YP_006862483.1|	-	0.064	12.9	0.2	0.12	12.0	0.2	1.4	1	0	0	1	1	1	0	XPA	protein	N-terminal
zf-CCHC_4	PF14392.1	gi|408404500|ref|YP_006862483.1|	-	0.086	12.5	0.1	0.11	12.1	0.0	1.4	1	0	0	1	1	1	0	Zinc	knuckle
DM	PF00751.13	gi|408404500|ref|YP_006862483.1|	-	0.19	11.2	1.2	1.7	8.2	0.5	2.1	2	0	0	2	2	2	0	DM	DNA	binding	domain
Helicase_C_2	PF13307.1	gi|408404501|ref|YP_006862484.1|	-	8.3e-23	81.1	0.0	2e-22	79.9	0.0	1.6	1	0	0	1	1	1	1	Helicase	C-terminal	domain
ResIII	PF04851.10	gi|408404501|ref|YP_006862484.1|	-	5.4e-07	29.6	0.0	0.00017	21.4	0.0	3.2	3	0	0	3	3	3	1	Type	III	restriction	enzyme,	res	subunit
DEAD_2	PF06733.10	gi|408404501|ref|YP_006862484.1|	-	1.1e-05	24.8	0.5	2.8e-05	23.5	0.0	1.9	2	0	0	2	2	2	1	DEAD_2
DEAD	PF00270.24	gi|408404501|ref|YP_006862484.1|	-	0.00038	19.9	0.0	1.4	8.4	0.0	2.9	3	0	0	3	3	3	2	DEAD/DEAH	box	helicase
AAA_22	PF13401.1	gi|408404501|ref|YP_006862484.1|	-	0.035	14.2	0.6	3.6	7.7	0.0	3.3	2	1	1	3	3	3	0	AAA	domain
RuvB_N	PF05496.7	gi|408404501|ref|YP_006862484.1|	-	0.052	12.5	0.0	0.43	9.5	0.0	2.2	2	0	0	2	2	2	0	Holliday	junction	DNA	helicase	ruvB	N-terminus
Exosortase_EpsH	PF09721.5	gi|408404502|ref|YP_006862485.1|	-	9.7e-05	21.7	23.3	0.00034	19.9	16.2	2.0	1	1	0	1	1	1	1	Transmembrane	exosortase	(Exosortase_EpsH)
IMS	PF00817.15	gi|408404503|ref|YP_006862486.1|	-	3.6e-41	140.4	0.3	6.8e-41	139.5	0.2	1.5	1	0	0	1	1	1	1	impB/mucB/samB	family
IMS_C	PF11799.3	gi|408404503|ref|YP_006862486.1|	-	2.6e-09	37.1	0.3	4.3e-09	36.3	0.2	1.3	1	0	0	1	1	1	1	impB/mucB/samB	family	C-terminal	domain
HHH_5	PF14520.1	gi|408404503|ref|YP_006862486.1|	-	2.3e-07	30.8	0.1	5.8e-07	29.5	0.0	1.6	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
IMS_HHH	PF11798.3	gi|408404503|ref|YP_006862486.1|	-	2.7e-05	23.9	0.0	5.7e-05	22.9	0.0	1.6	1	0	0	1	1	1	1	IMS	family	HHH	motif
DUF4332	PF14229.1	gi|408404503|ref|YP_006862486.1|	-	0.0028	17.5	0.0	0.017	15.1	0.0	2.2	2	1	0	2	2	2	1	Domain	of	unknown	function	(DUF4332)
Cdd1	PF11731.3	gi|408404503|ref|YP_006862486.1|	-	0.0064	16.3	0.0	0.037	13.9	0.0	2.3	2	1	0	2	2	2	1	Pathogenicity	locus
DNA_pol_lambd_f	PF10391.4	gi|408404503|ref|YP_006862486.1|	-	0.015	14.8	0.0	0.037	13.5	0.0	1.6	1	0	0	1	1	1	0	Fingers	domain	of	DNA	polymerase	lambda
DUF2893	PF11459.3	gi|408404503|ref|YP_006862486.1|	-	0.015	15.0	0.2	0.16	11.8	0.1	2.2	2	0	0	2	2	2	0	Protein	of	unknwon	function	(DUF2893)
Alba	PF01918.16	gi|408404505|ref|YP_006862488.1|	-	2.8e-12	46.0	0.2	3.8e-12	45.6	0.2	1.2	1	0	0	1	1	1	1	Alba
Rpp20	PF12328.3	gi|408404505|ref|YP_006862488.1|	-	0.0034	17.0	1.5	0.026	14.1	0.1	2.1	1	1	1	2	2	2	1	Rpp20	subunit	of	nuclear	RNase	MRP	and	P
LysE	PF01810.13	gi|408404506|ref|YP_006862489.1|	-	7.4e-19	67.7	17.8	8.7e-19	67.5	12.3	1.0	1	0	0	1	1	1	1	LysE	type	translocator
Radical_SAM	PF04055.16	gi|408404507|ref|YP_006862490.1|	-	1.5e-16	61.0	0.4	2.5e-16	60.2	0.3	1.4	1	0	0	1	1	1	1	Radical	SAM	superfamily
Fer4_12	PF13353.1	gi|408404507|ref|YP_006862490.1|	-	2.3e-06	27.7	0.2	5.3e-06	26.6	0.1	1.5	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_14	PF13394.1	gi|408404507|ref|YP_006862490.1|	-	2.9e-06	27.3	0.4	6.3e-06	26.2	0.1	1.7	2	0	0	2	2	2	1	4Fe-4S	single	cluster	domain
SPASM	PF13186.1	gi|408404507|ref|YP_006862490.1|	-	0.0035	17.6	0.9	0.0091	16.3	0.6	1.7	1	0	0	1	1	1	1	Iron-sulfur	cluster-binding	domain
DUF2452	PF10504.4	gi|408404508|ref|YP_006862491.1|	-	0.062	12.5	0.0	0.075	12.3	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2452)
MscS_porin	PF12795.2	gi|408404508|ref|YP_006862491.1|	-	0.076	12.3	0.2	0.082	12.2	0.1	1.0	1	0	0	1	1	1	0	Mechanosensitive	ion	channel	porin	domain
tRNA-synt_1e	PF01406.14	gi|408404509|ref|YP_006862492.1|	-	3.4e-72	243.1	0.0	6.1e-72	242.2	0.0	1.3	1	1	1	2	2	2	1	tRNA	synthetases	class	I	(C)	catalytic	domain
tRNA-synt_1g	PF09334.6	gi|408404509|ref|YP_006862492.1|	-	5.1e-15	55.0	0.0	2.1e-07	29.9	0.0	2.1	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(M)
tRNA-synt_1	PF00133.17	gi|408404509|ref|YP_006862492.1|	-	3.1e-08	32.0	0.0	9e-08	30.5	0.0	1.7	2	0	0	2	2	2	1	tRNA	synthetases	class	I	(I,	L,	M	and	V)
tRNA-synt_1f	PF01921.13	gi|408404509|ref|YP_006862492.1|	-	4.3e-06	25.6	0.0	0.00031	19.5	0.0	2.1	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(K)
tRNA-synt_1c	PF00749.16	gi|408404509|ref|YP_006862492.1|	-	7.3e-06	24.8	0.1	0.0013	17.4	0.0	3.0	2	1	0	2	2	2	1	tRNA	synthetases	class	I	(E	and	Q),	catalytic	domain
DALR_2	PF09190.6	gi|408404509|ref|YP_006862492.1|	-	0.0031	17.7	0.0	0.0092	16.2	0.0	1.8	1	0	0	1	1	1	1	DALR	domain
tRNA-synt_1d	PF00750.14	gi|408404509|ref|YP_006862492.1|	-	0.074	11.8	0.0	1.7	7.4	0.0	2.2	2	0	0	2	2	2	0	tRNA	synthetases	class	I	(R)
Acetyltransf_7	PF13508.1	gi|408404510|ref|YP_006862493.1|	-	5.6e-07	29.6	0.0	1e-06	28.8	0.0	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.1	gi|408404510|ref|YP_006862493.1|	-	0.00074	19.6	0.0	0.0051	16.9	0.0	2.0	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
NAD_binding_5	PF07994.7	gi|408404512|ref|YP_006862495.1|	-	3.1e-49	168.0	0.0	3.1e-48	164.7	0.0	1.9	1	1	0	1	1	1	1	Myo-inositol-1-phosphate	synthase
Inos-1-P_synth	PF01658.12	gi|408404512|ref|YP_006862495.1|	-	4.2e-26	90.9	0.0	6.9e-26	90.2	0.0	1.4	1	0	0	1	1	1	1	Myo-inositol-1-phosphate	synthase
SMC_N	PF02463.14	gi|408404513|ref|YP_006862496.1|	-	1e-62	211.2	0.0	2.8e-62	209.8	0.0	1.7	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_21	PF13304.1	gi|408404513|ref|YP_006862496.1|	-	3.4e-17	63.3	3.0	3.5e-09	37.0	0.1	2.8	2	1	0	2	2	2	2	AAA	domain
SMC_hinge	PF06470.8	gi|408404513|ref|YP_006862496.1|	-	3.6e-14	52.7	0.0	1.4e-13	50.8	0.0	2.1	1	0	0	1	1	1	1	SMC	proteins	Flexible	Hinge	Domain
AAA_23	PF13476.1	gi|408404513|ref|YP_006862496.1|	-	4.8e-12	46.6	29.4	4.8e-12	46.6	20.4	5.4	2	2	0	2	2	1	1	AAA	domain
AAA_29	PF13555.1	gi|408404513|ref|YP_006862496.1|	-	4.2e-06	26.1	0.1	1.2e-05	24.6	0.0	1.8	2	0	0	2	2	2	1	P-loop	containing	region	of	AAA	domain
AAA_15	PF13175.1	gi|408404513|ref|YP_006862496.1|	-	9.3e-05	21.6	30.1	0.00043	19.4	7.0	4.1	2	2	0	2	2	2	1	AAA	ATPase	domain
ABC_tran	PF00005.22	gi|408404513|ref|YP_006862496.1|	-	0.0035	17.6	14.4	2	8.6	5.0	5.4	3	2	0	3	3	3	2	ABC	transporter
CENP-F_leu_zip	PF10473.4	gi|408404513|ref|YP_006862496.1|	-	0.005	16.7	7.5	0.005	16.7	5.2	7.7	2	2	4	8	8	8	2	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
SbcCD_C	PF13558.1	gi|408404513|ref|YP_006862496.1|	-	0.011	15.6	0.0	0.066	13.1	0.0	2.4	2	0	0	2	2	2	0	Putative	exonuclease	SbcCD,	C	subunit
DUF869	PF05911.6	gi|408404513|ref|YP_006862496.1|	-	0.011	13.9	70.5	0.029	12.6	14.1	4.1	2	1	2	4	4	4	0	Plant	protein	of	unknown	function	(DUF869)
Reo_sigmaC	PF04582.7	gi|408404513|ref|YP_006862496.1|	-	0.026	13.7	31.5	0.031	13.4	0.7	5.3	2	2	3	5	5	5	0	Reovirus	sigma	C	capsid	protein
AAA_16	PF13191.1	gi|408404513|ref|YP_006862496.1|	-	0.034	14.1	0.0	0.034	14.1	0.0	3.4	4	0	0	4	4	4	0	AAA	ATPase	domain
Spc7	PF08317.6	gi|408404513|ref|YP_006862496.1|	-	0.36	9.4	75.3	0.0048	15.6	2.8	6.1	2	2	5	7	7	7	0	Spc7	kinetochore	protein
AAA_17	PF13207.1	gi|408404513|ref|YP_006862496.1|	-	1.9	9.3	10.2	2.3	9.0	0.0	4.8	3	2	0	4	4	4	0	AAA	domain
AAA_13	PF13166.1	gi|408404513|ref|YP_006862496.1|	-	2.7	6.3	69.4	0.18	10.2	9.2	5.7	3	2	1	5	5	5	0	AAA	domain
NPV_P10	PF05531.7	gi|408404513|ref|YP_006862496.1|	-	3.3	8.0	15.8	1.2	9.4	0.0	5.9	4	2	1	5	5	5	0	Nucleopolyhedrovirus	P10	protein
Cation_efflux	PF01545.16	gi|408404514|ref|YP_006862497.1|	-	5.5e-48	163.4	9.9	6e-48	163.3	6.9	1.0	1	0	0	1	1	1	1	Cation	efflux	family
PRRSV_2b	PF07069.6	gi|408404514|ref|YP_006862497.1|	-	3.1	8.1	6.0	0.81	10.0	1.6	1.9	2	0	0	2	2	2	0	Porcine	reproductive	and	respiratory	syndrome	virus	2b
FA_hydroxylase	PF04116.8	gi|408404514|ref|YP_006862497.1|	-	5.8	7.3	6.8	2.5	8.5	2.1	2.2	1	1	1	2	2	2	0	Fatty	acid	hydroxylase	superfamily
DUF2387	PF09526.5	gi|408404515|ref|YP_006862498.1|	-	0.0044	16.9	0.2	0.0046	16.8	0.2	1.2	1	0	0	1	1	1	1	Probable	metal-binding	protein	(DUF2387)
zinc_ribbon_4	PF13717.1	gi|408404515|ref|YP_006862498.1|	-	0.01	15.4	0.9	3.5	7.4	0.0	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_5	PF13719.1	gi|408404515|ref|YP_006862498.1|	-	0.013	15.1	1.0	3.6	7.2	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
C1_4	PF07975.7	gi|408404515|ref|YP_006862498.1|	-	0.062	13.3	1.3	0.47	10.5	1.1	1.9	1	1	0	1	1	1	0	TFIIH	C1-like	domain
PADR1	PF08063.7	gi|408404515|ref|YP_006862498.1|	-	0.068	12.5	1.8	0.12	11.7	1.2	1.4	1	1	0	1	1	1	0	PADR1	(NUC008)	domain
Elf1	PF05129.8	gi|408404515|ref|YP_006862498.1|	-	0.15	11.7	0.7	0.21	11.3	0.5	1.1	1	0	0	1	1	1	0	Transcription	elongation	factor	Elf1	like
zf-TFIIB	PF13453.1	gi|408404515|ref|YP_006862498.1|	-	1.1	8.5	3.4	3.2	7.0	2.4	1.8	1	1	0	1	1	1	0	Transcription	factor	zinc-finger
DUF645	PF04875.7	gi|408404516|ref|YP_006862499.1|	-	0.11	12.1	0.0	0.15	11.7	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF645
Guanylate_cyc	PF00211.15	gi|408404517|ref|YP_006862500.1|	-	0.028	13.7	0.0	0.03	13.6	0.0	1.1	1	0	0	1	1	1	0	Adenylate	and	Guanylate	cyclase	catalytic	domain
DDE_Tnp_1	PF01609.16	gi|408404518|ref|YP_006862501.1|	-	0.0042	16.6	0.2	0.0078	15.7	0.1	1.5	1	1	0	1	1	1	1	Transposase	DDE	domain
DUF1815	PF08844.5	gi|408404518|ref|YP_006862501.1|	-	0.018	14.6	0.2	0.049	13.2	0.0	1.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1815)
DUF543	PF04418.7	gi|408404521|ref|YP_006862504.1|	-	0.0064	16.4	7.9	2.5	8.1	0.0	5.0	6	0	0	6	6	6	3	Domain	of	unknown	function	(DUF543)
SNARE_assoc	PF09335.6	gi|408404527|ref|YP_006862510.1|	-	5.1e-15	55.7	4.1	5.1e-15	55.7	2.8	2.5	1	1	2	3	3	3	1	SNARE	associated	Golgi	protein
ProRS-C_1	PF09180.6	gi|408404528|ref|YP_006862511.1|	-	3.9e-27	93.9	0.8	1.9e-26	91.7	0.4	2.1	2	0	0	2	2	2	1	Prolyl-tRNA	synthetase,	C-terminal
tRNA-synt_2b	PF00587.20	gi|408404528|ref|YP_006862511.1|	-	1.3e-18	67.1	0.0	2.2e-18	66.4	0.0	1.3	1	0	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
HGTP_anticodon	PF03129.15	gi|408404528|ref|YP_006862511.1|	-	1.7e-17	63.1	0.2	3.8e-17	62.0	0.2	1.6	1	0	0	1	1	1	1	Anticodon	binding	domain
DUF650	PF04894.7	gi|408404531|ref|YP_006862514.1|	-	3.4e-82	275.9	0.0	5.2e-82	275.3	0.0	1.2	1	0	0	1	1	1	1	Archaeal	protein	of	unknown	function	(DUF650)
DUF651	PF04895.7	gi|408404531|ref|YP_006862514.1|	-	3.9e-37	126.2	0.0	6.5e-37	125.5	0.0	1.4	1	0	0	1	1	1	1	Archaeal	protein	of	unknown	function	(DUF651)
Peptidase_S8	PF00082.17	gi|408404532|ref|YP_006862515.1|	-	9.2e-17	61.0	0.1	2e-16	59.9	0.1	1.5	1	0	0	1	1	1	1	Subtilase	family
F5_F8_type_C	PF00754.20	gi|408404532|ref|YP_006862515.1|	-	2.1e-08	34.0	0.1	6.3e-08	32.5	0.0	1.9	1	0	0	1	1	1	1	F5/8	type	C	domain
Big_3_4	PF13754.1	gi|408404532|ref|YP_006862515.1|	-	2.2e-08	34.3	13.2	0.009	16.3	1.9	4.0	3	0	0	3	3	3	3	Bacterial	Ig-like	domain	(group	3)
BiPBP_C	PF06832.7	gi|408404532|ref|YP_006862515.1|	-	0.00053	19.8	0.1	0.49	10.3	0.0	3.9	3	1	0	3	3	3	1	Penicillin-Binding	Protein	C-terminus	Family
PKD	PF00801.15	gi|408404532|ref|YP_006862515.1|	-	0.051	13.3	1.5	35	4.2	0.0	4.1	4	0	0	4	4	4	0	PKD	domain
CTP_transf_2	PF01467.21	gi|408404533|ref|YP_006862516.1|	-	2.7e-09	37.2	0.2	6.2e-09	36.1	0.2	1.6	1	1	0	1	1	1	1	Cytidylyltransferase
DUF2122	PF09895.4	gi|408404533|ref|YP_006862516.1|	-	0.045	13.9	0.2	4	7.6	0.0	2.2	2	0	0	2	2	2	0	RecB-family	nuclease	(DUF2122)
FAD_syn	PF06574.7	gi|408404533|ref|YP_006862516.1|	-	0.1	12.2	0.1	0.26	10.8	0.1	1.6	2	0	0	2	2	2	0	FAD	synthetase
CTP-dep_RFKase	PF01982.11	gi|408404534|ref|YP_006862517.1|	-	6.2e-42	142.0	0.0	9e-42	141.5	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF120
MarR_2	PF12802.2	gi|408404534|ref|YP_006862517.1|	-	0.00069	19.2	0.0	0.0012	18.5	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_27	PF13463.1	gi|408404534|ref|YP_006862517.1|	-	0.00098	19.4	0.1	0.0018	18.5	0.0	1.5	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
TrmB	PF01978.14	gi|408404534|ref|YP_006862517.1|	-	0.0016	18.0	0.0	0.0029	17.2	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_20	PF12840.2	gi|408404534|ref|YP_006862517.1|	-	0.0017	18.1	0.1	0.0027	17.4	0.1	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.1	gi|408404534|ref|YP_006862517.1|	-	0.004	16.5	0.0	0.0075	15.6	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_34	PF13601.1	gi|408404534|ref|YP_006862517.1|	-	0.0044	17.0	0.1	0.009	16.0	0.1	1.6	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
MarR	PF01047.17	gi|408404534|ref|YP_006862517.1|	-	0.0067	16.1	0.0	0.011	15.4	0.0	1.4	1	0	0	1	1	1	1	MarR	family
LexA_DNA_bind	PF01726.11	gi|408404534|ref|YP_006862517.1|	-	0.036	13.6	0.0	0.086	12.4	0.0	1.6	1	0	0	1	1	1	0	LexA	DNA	binding	domain
ETX_MTX2	PF03318.8	gi|408404534|ref|YP_006862517.1|	-	0.063	12.8	0.0	0.1	12.1	0.0	1.2	1	0	0	1	1	1	0	Clostridium	epsilon	toxin	ETX/Bacillus	mosquitocidal	toxin	MTX2
HTH_11	PF08279.7	gi|408404534|ref|YP_006862517.1|	-	0.096	12.3	0.0	0.18	11.5	0.0	1.4	1	0	0	1	1	1	0	HTH	domain
Toprim_4	PF13662.1	gi|408404535|ref|YP_006862518.1|	-	2.3e-08	33.9	0.2	6.6e-08	32.4	0.2	1.8	1	0	0	1	1	1	1	Toprim	domain
Toprim_2	PF13155.1	gi|408404535|ref|YP_006862518.1|	-	0.027	14.7	0.0	0.066	13.5	0.0	1.7	1	0	0	1	1	1	0	Toprim-like
Toprim	PF01751.17	gi|408404535|ref|YP_006862518.1|	-	0.046	13.6	0.3	0.2	11.6	0.2	2.1	1	1	0	1	1	1	0	Toprim	domain
Toprim_4	PF13662.1	gi|408404536|ref|YP_006862519.1|	-	2.2e-08	34.0	0.0	3.2e-08	33.4	0.0	1.2	1	0	0	1	1	1	1	Toprim	domain
Toprim	PF01751.17	gi|408404536|ref|YP_006862519.1|	-	5.1e-06	26.3	0.1	0.00011	22.1	0.1	2.2	1	1	0	1	1	1	1	Toprim	domain
Toprim_2	PF13155.1	gi|408404536|ref|YP_006862519.1|	-	0.0012	19.1	0.0	0.002	18.4	0.0	1.5	1	1	0	1	1	1	1	Toprim-like
Toprim_3	PF13362.1	gi|408404536|ref|YP_006862519.1|	-	0.015	15.5	0.0	0.02	15.1	0.0	1.3	1	0	0	1	1	1	0	Toprim	domain
RinB	PF06116.7	gi|408404536|ref|YP_006862519.1|	-	0.041	13.4	0.0	0.093	12.3	0.0	1.5	1	0	0	1	1	1	0	Transcriptional	activator	RinB
GATase	PF00117.23	gi|408404537|ref|YP_006862520.1|	-	2e-23	82.8	0.0	2.7e-23	82.4	0.0	1.1	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.8	gi|408404537|ref|YP_006862520.1|	-	2.2e-07	30.5	0.1	4.3e-07	29.5	0.0	1.6	1	1	0	1	1	1	1	Peptidase	C26
DJ-1_PfpI	PF01965.19	gi|408404537|ref|YP_006862520.1|	-	7.6e-05	22.1	0.0	0.0001	21.7	0.0	1.2	1	0	0	1	1	1	1	DJ-1/PfpI	family
GATase_3	PF07685.9	gi|408404537|ref|YP_006862520.1|	-	0.0015	18.1	0.0	0.0024	17.4	0.0	1.3	1	0	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
HTS	PF04204.11	gi|408404537|ref|YP_006862520.1|	-	0.0056	15.4	0.0	0.0073	15.0	0.0	1.1	1	0	0	1	1	1	1	Homoserine	O-succinyltransferase
UPF0180	PF03698.8	gi|408404537|ref|YP_006862520.1|	-	0.024	14.4	0.0	0.046	13.5	0.0	1.4	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0180)
ATP-grasp_5	PF13549.1	gi|408404538|ref|YP_006862521.1|	-	1e-59	201.4	0.1	1.6e-59	200.8	0.1	1.3	1	0	0	1	1	1	1	ATP-grasp	domain
Succ_CoA_lig	PF13607.1	gi|408404538|ref|YP_006862521.1|	-	7.9e-47	158.3	0.1	6.2e-46	155.4	0.1	2.3	2	0	0	2	2	2	1	Succinyl-CoA	ligase	like	flavodoxin	domain
CoA_binding_2	PF13380.1	gi|408404538|ref|YP_006862521.1|	-	6.5e-22	77.8	0.0	1.9e-21	76.3	0.0	1.9	1	0	0	1	1	1	1	CoA	binding	domain
CoA_binding	PF02629.14	gi|408404538|ref|YP_006862521.1|	-	5.2e-12	46.1	3.3	8.1e-12	45.5	0.1	3.0	4	0	0	4	4	4	1	CoA	binding	domain
ATP-grasp_4	PF13535.1	gi|408404538|ref|YP_006862521.1|	-	0.011	15.5	0.0	0.055	13.1	0.0	2.1	2	0	0	2	2	2	0	ATP-grasp	domain
ATP-grasp	PF02222.17	gi|408404538|ref|YP_006862521.1|	-	0.097	12.0	0.1	0.21	10.9	0.0	1.6	1	0	0	1	1	1	0	ATP-grasp	domain
UPF0086	PF01868.11	gi|408404539|ref|YP_006862522.1|	-	0.00034	20.2	0.2	0.47	10.1	0.0	2.2	2	0	0	2	2	2	2	Domain	of	unknown	function	UPF0086
Kelch_2	PF07646.10	gi|408404539|ref|YP_006862522.1|	-	0.012	15.3	0.1	2.7	7.8	0.0	2.4	2	0	0	2	2	2	0	Kelch	motif
Metallophos_3	PF14582.1	gi|408404539|ref|YP_006862522.1|	-	0.027	13.6	0.0	0.96	8.5	0.0	2.1	2	0	0	2	2	2	0	Metallophosphoesterase,	calcineurin	superfamily
7TMR-DISM_7TM	PF07695.6	gi|408404540|ref|YP_006862523.1|	-	0.16	11.6	7.9	1.5	8.4	0.8	2.1	2	0	0	2	2	2	0	7TM	diverse	intracellular	signalling
ResIII	PF04851.10	gi|408404541|ref|YP_006862524.1|	-	2.1e-11	44.0	0.0	1.1e-10	41.6	0.0	1.9	1	1	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
DEAD	PF00270.24	gi|408404541|ref|YP_006862524.1|	-	6.1e-05	22.5	0.0	0.00016	21.1	0.0	1.7	1	1	0	1	1	1	1	DEAD/DEAH	box	helicase
Flavi_DEAD	PF07652.9	gi|408404541|ref|YP_006862524.1|	-	0.14	11.9	0.0	0.21	11.3	0.0	1.3	1	0	0	1	1	1	0	Flavivirus	DEAD	domain
DUF3323	PF11796.3	gi|408404542|ref|YP_006862525.1|	-	0.011	15.0	0.1	0.012	14.9	0.1	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	N-terminus	(DUF3323)
DUF3565	PF12088.3	gi|408404542|ref|YP_006862525.1|	-	0.13	12.0	0.1	0.18	11.5	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3565)
Helicase_C	PF00271.26	gi|408404543|ref|YP_006862526.1|	-	0.00033	20.4	0.0	0.00042	20.1	0.0	1.2	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
Phage_integrase	PF00589.17	gi|408404544|ref|YP_006862527.1|	-	2.9e-07	30.3	0.0	8.3e-07	28.8	0.0	1.7	1	0	0	1	1	1	1	Phage	integrase	family
Voltage_CLC	PF00654.15	gi|408404545|ref|YP_006862528.1|	-	0.018	14.0	0.4	0.023	13.7	0.3	1.1	1	0	0	1	1	1	0	Voltage	gated	chloride	channel
Adenylate_cycl	PF01295.13	gi|408404547|ref|YP_006862530.1|	-	0.017	13.4	0.0	0.017	13.4	0.0	1.2	1	0	0	1	1	1	0	Adenylate	cyclase,	class-I
Peptidase_A24	PF01478.13	gi|408404551|ref|YP_006862534.1|	-	6.6e-12	45.5	8.1	6.6e-12	45.5	5.6	2.2	2	0	0	2	2	2	1	Type	IV	leader	peptidase	family
Arc_PepC_II	PF06847.6	gi|408404551|ref|YP_006862534.1|	-	7.5e-08	32.7	0.0	1.4e-07	31.7	0.0	1.5	1	0	0	1	1	1	1	Archaeal	Peptidase	A24	C-terminus	Type	II
CbiN	PF02553.10	gi|408404551|ref|YP_006862534.1|	-	0.02	14.8	0.2	0.05	13.6	0.0	1.7	1	1	0	1	1	1	0	Cobalt	transport	protein	component	CbiN
K-box	PF01486.12	gi|408404552|ref|YP_006862535.1|	-	0.0027	17.4	4.0	0.022	14.5	0.3	2.1	2	0	0	2	2	2	1	K-box	region
DUF4172	PF13776.1	gi|408404552|ref|YP_006862535.1|	-	0.022	14.8	0.1	0.05	13.6	0.0	1.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4172)
TMF_TATA_bd	PF12325.3	gi|408404552|ref|YP_006862535.1|	-	0.046	13.4	1.4	0.51	10.0	0.1	2.1	2	0	0	2	2	2	0	TATA	element	modulatory	factor	1	TATA	binding
DUF3788	PF12663.2	gi|408404552|ref|YP_006862535.1|	-	0.064	12.9	0.6	0.11	12.1	0.2	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3788)
Laminin_I	PF06008.9	gi|408404552|ref|YP_006862535.1|	-	0.12	11.7	1.2	2.4	7.3	0.0	2.0	2	0	0	2	2	2	0	Laminin	Domain	I
ELH	PF02323.10	gi|408404552|ref|YP_006862535.1|	-	0.16	11.1	1.0	0.3	10.2	0.4	1.7	1	1	0	1	1	1	0	Egg-laying	hormone	precursor
MbeD_MobD	PF04899.7	gi|408404552|ref|YP_006862535.1|	-	0.17	11.8	0.9	0.73	9.7	0.0	2.1	2	1	0	2	2	2	0	MbeD/MobD	like
Nup54	PF13874.1	gi|408404552|ref|YP_006862535.1|	-	0.2	11.3	3.2	0.63	9.6	0.6	2.0	2	0	0	2	2	2	0	Nucleoporin	complex	subunit	54
HATPase_c_3	PF13589.1	gi|408404556|ref|YP_006862539.1|	-	0.0025	17.4	0.0	0.008	15.8	0.0	1.8	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PapC_N	PF13954.1	gi|408404560|ref|YP_006862543.1|	-	0.011	15.2	1.4	0.083	12.4	0.0	2.1	1	1	1	2	2	2	0	PapC	N-terminal	domain
DUF2141	PF09912.4	gi|408404560|ref|YP_006862543.1|	-	0.021	14.4	0.0	0.037	13.6	0.0	1.4	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2141)
SnoaL	PF07366.7	gi|408404560|ref|YP_006862543.1|	-	0.034	13.7	0.0	0.055	13.0	0.0	1.4	1	1	0	1	1	1	0	SnoaL-like	polyketide	cyclase
SLX9	PF15341.1	gi|408404560|ref|YP_006862543.1|	-	2.7	8.4	9.0	2.7	8.4	5.8	1.4	1	1	0	1	1	1	0	Ribosome	biogenesis	protein	SLX9
PRiA4_ORF3	PF07929.6	gi|408404562|ref|YP_006862545.1|	-	0.0017	17.7	0.0	0.0023	17.3	0.0	1.2	1	0	0	1	1	1	1	Plasmid	pRiA4b	ORF-3-like	protein
zf-DNL	PF05180.7	gi|408404562|ref|YP_006862545.1|	-	0.8	9.4	5.1	0.41	10.3	1.4	2.1	2	0	0	2	2	2	0	DNL	zinc	finger
ResIII	PF04851.10	gi|408404563|ref|YP_006862546.1|	-	4.8e-10	39.5	0.0	1.4e-09	38.0	0.0	1.8	1	1	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
SNF2_N	PF00176.18	gi|408404563|ref|YP_006862546.1|	-	2.6e-09	36.3	0.0	3.1e-09	36.0	0.0	1.2	1	0	0	1	1	1	1	SNF2	family	N-terminal	domain
DEAD	PF00270.24	gi|408404563|ref|YP_006862546.1|	-	7.7e-07	28.7	0.0	1.3e-06	28.0	0.0	1.3	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.26	gi|408404563|ref|YP_006862546.1|	-	2.6e-06	27.2	0.0	7.7e-06	25.6	0.0	1.8	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
DEAD	PF00270.24	gi|408404564|ref|YP_006862547.1|	-	3.6e-23	81.8	0.1	1.2e-22	80.2	0.0	1.8	2	0	0	2	2	2	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.26	gi|408404564|ref|YP_006862547.1|	-	1.2e-22	79.5	0.0	3.1e-22	78.2	0.0	1.7	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.10	gi|408404564|ref|YP_006862547.1|	-	2.9e-15	56.5	0.0	5.6e-15	55.6	0.0	1.4	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
PhoH	PF02562.11	gi|408404564|ref|YP_006862547.1|	-	0.058	12.6	0.0	0.77	8.9	0.0	2.3	2	0	0	2	2	2	0	PhoH-like	protein
SNF2_N	PF00176.18	gi|408404564|ref|YP_006862547.1|	-	0.083	11.6	0.1	0.17	10.6	0.0	1.4	1	0	0	1	1	1	0	SNF2	family	N-terminal	domain
HEAT_2	PF13646.1	gi|408404566|ref|YP_006862549.1|	-	8.7e-06	25.9	2.7	0.0035	17.5	0.8	2.6	1	1	1	2	2	2	2	HEAT	repeats
DUF1186	PF06685.6	gi|408404566|ref|YP_006862549.1|	-	0.00068	18.8	0.0	0.00084	18.5	0.0	1.3	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF1186)
HEAT_PBS	PF03130.11	gi|408404566|ref|YP_006862549.1|	-	0.025	15.0	0.0	3.2	8.5	0.0	3.1	3	0	0	3	3	3	0	PBS	lyase	HEAT-like	repeat
AAA_10	PF12846.2	gi|408404568|ref|YP_006862551.1|	-	2.3e-18	66.6	0.0	4e-18	65.8	0.0	1.3	1	0	0	1	1	1	1	AAA-like	domain
FtsK_SpoIIIE	PF01580.13	gi|408404568|ref|YP_006862551.1|	-	1.6e-06	27.7	0.0	1.1e-05	24.9	0.0	2.2	2	0	0	2	2	2	1	FtsK/SpoIIIE	family
AAA_22	PF13401.1	gi|408404568|ref|YP_006862551.1|	-	0.00019	21.6	0.0	0.021	14.9	0.0	2.9	3	0	0	3	3	3	1	AAA	domain
TrwB_AAD_bind	PF10412.4	gi|408404568|ref|YP_006862551.1|	-	0.00021	20.0	0.0	0.0011	17.7	0.0	2.0	1	1	0	1	1	1	1	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
HTH_45	PF14947.1	gi|408404568|ref|YP_006862551.1|	-	0.00038	20.2	0.1	0.0091	15.7	0.0	2.6	2	0	0	2	2	2	1	Winged	helix-turn-helix
AAA_14	PF13173.1	gi|408404568|ref|YP_006862551.1|	-	0.00074	19.4	0.1	0.021	14.7	0.0	2.7	2	0	0	2	2	2	1	AAA	domain
Arch_ATPase	PF01637.13	gi|408404568|ref|YP_006862551.1|	-	0.0021	17.8	2.9	0.1	12.3	0.0	3.1	3	0	0	3	3	3	1	Archaeal	ATPase
MMR_HSR1	PF01926.18	gi|408404568|ref|YP_006862551.1|	-	0.011	15.6	0.8	0.039	13.8	0.0	2.4	3	0	0	3	3	3	0	50S	ribosome-binding	GTPase
Miro	PF08477.8	gi|408404568|ref|YP_006862551.1|	-	0.016	15.6	0.0	0.12	12.8	0.0	2.3	2	0	0	2	2	2	0	Miro-like	protein
HTH_27	PF13463.1	gi|408404568|ref|YP_006862551.1|	-	0.11	12.8	0.1	13	6.1	0.0	2.8	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
CBS	PF00571.23	gi|408404570|ref|YP_006862553.1|	-	0.00072	19.2	0.1	0.057	13.2	0.0	2.5	2	1	0	2	2	2	2	CBS	domain
CBS	PF00571.23	gi|408404571|ref|YP_006862554.1|	-	0.0019	17.9	0.5	0.71	9.7	0.0	2.4	2	1	0	2	2	2	2	CBS	domain
DctQ	PF04290.7	gi|408404572|ref|YP_006862555.1|	-	0.069	12.9	1.1	0.081	12.6	0.7	1.1	1	0	0	1	1	1	0	Tripartite	ATP-independent	periplasmic	transporters,	DctQ	component
DUF418	PF04235.7	gi|408404573|ref|YP_006862556.1|	-	0.028	14.0	2.2	0.044	13.4	0.1	1.9	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF418)
GtrA	PF04138.9	gi|408404573|ref|YP_006862556.1|	-	0.052	13.5	0.1	0.092	12.7	0.0	1.4	1	1	0	1	1	1	0	GtrA-like	protein
ECF-ribofla_trS	PF07155.7	gi|408404573|ref|YP_006862556.1|	-	0.071	12.8	3.1	0.092	12.4	2.2	1.1	1	0	0	1	1	1	0	ECF-type	riboflavin	transporter,	S	component
Rab5ip	PF07019.7	gi|408404573|ref|YP_006862556.1|	-	0.11	12.5	3.2	0.29	11.2	0.2	2.1	2	0	0	2	2	2	0	Rab5-interacting	protein	(Rab5ip)
Yip1	PF04893.12	gi|408404573|ref|YP_006862556.1|	-	0.49	9.8	9.7	4.5	6.7	6.7	1.9	1	1	0	1	1	1	0	Yip1	domain
TrbC	PF04956.8	gi|408404573|ref|YP_006862556.1|	-	1.4	9.0	6.8	4.7	7.2	0.2	2.6	2	1	0	2	2	2	0	TrbC/VIRB2	family
Pyr_redox_2	PF07992.9	gi|408404574|ref|YP_006862557.1|	-	2.5e-39	135.2	2.4	3.6e-38	131.4	1.7	3.1	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.17	gi|408404574|ref|YP_006862557.1|	-	1.4e-30	105.5	0.3	2.9e-30	104.5	0.2	1.5	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
Pyr_redox	PF00070.22	gi|408404574|ref|YP_006862557.1|	-	1.6e-17	63.6	1.4	1.4e-13	51.0	0.0	2.7	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.17	gi|408404574|ref|YP_006862557.1|	-	1.8e-12	46.8	0.7	6.9e-11	41.6	0.0	2.7	3	0	0	3	3	3	1	Glucose	inhibited	division	protein	A
Pyr_redox_3	PF13738.1	gi|408404574|ref|YP_006862557.1|	-	9.7e-08	32.3	0.2	0.0015	18.6	0.1	2.7	2	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.9	gi|408404574|ref|YP_006862557.1|	-	1.8e-06	26.7	5.0	0.003	16.0	0.8	3.6	3	1	1	4	4	4	2	HI0933-like	protein
FAD_oxidored	PF12831.2	gi|408404574|ref|YP_006862557.1|	-	4.6e-05	22.6	1.8	4.6e-05	22.6	1.2	2.1	2	1	1	3	3	3	1	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.19	gi|408404574|ref|YP_006862557.1|	-	6e-05	22.0	3.2	0.0014	17.5	2.1	2.5	2	1	1	3	3	3	1	FAD	binding	domain
DAO	PF01266.19	gi|408404574|ref|YP_006862557.1|	-	0.00015	20.7	4.0	0.0085	15.0	0.5	2.4	2	1	0	2	2	2	2	FAD	dependent	oxidoreductase
K_oxygenase	PF13434.1	gi|408404574|ref|YP_006862557.1|	-	0.00018	20.5	0.1	0.096	11.5	0.0	3.0	2	1	1	3	3	3	1	L-lysine	6-monooxygenase	(NADPH-requiring)
NAD_binding_8	PF13450.1	gi|408404574|ref|YP_006862557.1|	-	0.00094	19.1	4.5	0.4	10.7	1.7	2.7	2	0	0	2	2	2	2	NAD(P)-binding	Rossmann-like	domain
Thi4	PF01946.12	gi|408404574|ref|YP_006862557.1|	-	0.0042	16.2	0.1	0.22	10.5	0.1	3.0	3	0	0	3	3	3	1	Thi4	family
FAD_binding_3	PF01494.14	gi|408404574|ref|YP_006862557.1|	-	0.019	14.0	0.4	0.47	9.4	0.1	2.2	2	0	0	2	2	2	0	FAD	binding	domain
Lycopene_cycl	PF05834.7	gi|408404574|ref|YP_006862557.1|	-	0.085	11.7	0.2	0.53	9.1	0.3	2.0	2	0	0	2	2	2	0	Lycopene	cyclase	protein
Bacteriocin_IIc	PF10439.4	gi|408404575|ref|YP_006862558.1|	-	0.21	11.7	8.9	0.29	11.2	6.2	1.2	1	0	0	1	1	1	0	Bacteriocin	class	II	with	double-glycine	leader	peptide
HxlR	PF01638.12	gi|408404576|ref|YP_006862559.1|	-	1.2e-22	79.3	0.2	1.7e-22	78.8	0.1	1.2	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
PadR	PF03551.9	gi|408404576|ref|YP_006862559.1|	-	0.0003	20.5	0.1	0.00055	19.6	0.1	1.5	2	0	0	2	2	2	1	Transcriptional	regulator	PadR-like	family
B-block_TFIIIC	PF04182.7	gi|408404576|ref|YP_006862559.1|	-	0.0073	16.1	0.0	0.0095	15.7	0.0	1.4	1	1	0	1	1	1	1	B-block	binding	subunit	of	TFIIIC
RepL	PF05732.6	gi|408404576|ref|YP_006862559.1|	-	0.013	14.7	0.0	0.016	14.4	0.0	1.2	1	0	0	1	1	1	0	Firmicute	plasmid	replication	protein	(RepL)
HTH_24	PF13412.1	gi|408404576|ref|YP_006862559.1|	-	0.021	14.2	0.4	0.034	13.5	0.3	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
FUR	PF01475.14	gi|408404576|ref|YP_006862559.1|	-	0.077	12.9	0.0	0.094	12.6	0.0	1.2	1	0	0	1	1	1	0	Ferric	uptake	regulator	family
HTH_20	PF12840.2	gi|408404576|ref|YP_006862559.1|	-	0.14	11.9	0.0	0.23	11.3	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF478	PF04334.7	gi|408404577|ref|YP_006862560.1|	-	0.056	13.2	2.5	0.1	12.4	0.4	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF478)
Prominin	PF05478.6	gi|408404577|ref|YP_006862560.1|	-	0.37	8.2	5.7	0.46	7.9	3.9	1.1	1	0	0	1	1	1	0	Prominin
AhpC-TSA	PF00578.16	gi|408404578|ref|YP_006862561.1|	-	3.9e-09	36.2	0.0	5.7e-09	35.7	0.0	1.2	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.5	gi|408404578|ref|YP_006862561.1|	-	7.6e-09	35.2	0.0	9.7e-09	34.9	0.0	1.1	1	0	0	1	1	1	1	Redoxin
Thioredoxin_8	PF13905.1	gi|408404578|ref|YP_006862561.1|	-	2.6e-07	30.6	0.0	4e-07	30.0	0.0	1.3	1	0	0	1	1	1	1	Thioredoxin-like
Thioredoxin_2	PF13098.1	gi|408404578|ref|YP_006862561.1|	-	5.2e-06	26.6	0.0	6.4e-06	26.3	0.0	1.1	1	0	0	1	1	1	1	Thioredoxin-like	domain
Thioredoxin_7	PF13899.1	gi|408404578|ref|YP_006862561.1|	-	0.00011	22.1	0.0	0.00018	21.4	0.0	1.5	1	1	0	1	1	1	1	Thioredoxin-like
Thioredoxin	PF00085.15	gi|408404578|ref|YP_006862561.1|	-	0.00072	19.2	0.0	0.0018	17.9	0.0	1.6	2	0	0	2	2	2	1	Thioredoxin
YtfJ_HI0045	PF09695.5	gi|408404578|ref|YP_006862561.1|	-	0.073	12.4	0.0	0.098	11.9	0.0	1.2	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(YtfJ_HI0045)
NADH_4Fe-4S	PF10589.4	gi|408404578|ref|YP_006862561.1|	-	0.097	11.8	0.1	0.17	11.0	0.0	1.3	1	0	0	1	1	1	0	NADH-ubiquinone	oxidoreductase-F	iron-sulfur	binding	region
DUF2628	PF10947.3	gi|408404579|ref|YP_006862562.1|	-	0.64	9.8	6.1	0.67	9.7	1.4	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2628)
DUF751	PF05421.6	gi|408404579|ref|YP_006862562.1|	-	0.69	10.2	0.1	0.69	10.2	0.1	2.9	2	2	1	3	3	3	0	Protein	of	unknown	function	(DUF751)
VIT1	PF01988.14	gi|408404579|ref|YP_006862562.1|	-	4.9	6.5	13.6	1.4	8.3	2.6	2.1	1	1	1	2	2	2	0	VIT	family
DUF3179	PF11376.3	gi|408404580|ref|YP_006862563.1|	-	4.2e-99	331.0	0.5	7.9e-98	326.8	0.3	2.9	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF3179)
DUF3820	PF12843.2	gi|408404580|ref|YP_006862563.1|	-	0.18	11.4	0.9	1.3	8.6	0.1	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3820)
DoxX_2	PF13564.1	gi|408404581|ref|YP_006862564.1|	-	0.096	12.6	2.7	2.1	8.3	0.2	2.2	2	0	0	2	2	2	0	DoxX-like	family
Asp-Al_Ex	PF06826.7	gi|408404581|ref|YP_006862564.1|	-	0.49	9.8	7.8	0.044	13.2	1.1	1.9	1	1	1	2	2	2	0	Predicted	Permease	Membrane	Region
DUF1887	PF09002.6	gi|408404582|ref|YP_006862565.1|	-	0.0058	15.0	0.0	0.0091	14.4	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1887)
Copper-bind	PF00127.15	gi|408404583|ref|YP_006862566.1|	-	5e-11	42.7	0.1	1.4e-10	41.3	0.1	1.8	1	0	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
Cupredoxin_1	PF13473.1	gi|408404583|ref|YP_006862566.1|	-	1.9e-09	37.3	0.4	7.4e-08	32.2	0.1	3.2	2	1	0	2	2	2	1	Cupredoxin-like	domain
DUF3244	PF11589.3	gi|408404583|ref|YP_006862566.1|	-	0.12	12.0	0.1	1.1	8.9	0.0	2.3	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3244)
Thioredoxin_4	PF13462.1	gi|408404584|ref|YP_006862567.1|	-	4.9e-40	137.2	0.0	6.9e-40	136.7	0.0	1.2	1	0	0	1	1	1	1	Thioredoxin
DSBA	PF01323.15	gi|408404584|ref|YP_006862567.1|	-	5.6e-16	58.6	0.0	2e-14	53.5	0.0	2.1	1	1	0	1	1	1	1	DSBA-like	thioredoxin	domain
Thioredoxin_2	PF13098.1	gi|408404584|ref|YP_006862567.1|	-	1.4e-09	38.1	0.0	2.9e-09	37.1	0.0	1.5	1	1	0	1	1	1	1	Thioredoxin-like	domain
Thioredoxin_5	PF13743.1	gi|408404584|ref|YP_006862567.1|	-	7.4e-05	22.3	0.0	0.0001	21.9	0.0	1.3	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_8	PF13905.1	gi|408404584|ref|YP_006862567.1|	-	0.016	15.3	0.0	0.83	9.8	0.0	2.6	1	1	0	1	1	1	0	Thioredoxin-like
DUF1610	PF07754.6	gi|408404584|ref|YP_006862567.1|	-	0.17	12.0	0.8	0.39	10.8	0.5	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1610)
zf-C2H2_jaz	PF12171.3	gi|408404586|ref|YP_006862569.1|	-	1.9e-07	31.0	4.2	0.0064	16.6	0.5	2.4	2	0	0	2	2	2	2	Zinc-finger	double-stranded	RNA-binding
zf-met	PF12874.2	gi|408404586|ref|YP_006862569.1|	-	2.1e-07	30.8	7.1	0.0025	17.9	1.0	2.3	2	0	0	2	2	2	2	Zinc-finger	of	C2H2	type
zf-C2H2_6	PF13912.1	gi|408404586|ref|YP_006862569.1|	-	2.5e-07	30.3	5.7	0.00024	20.9	0.0	2.2	2	0	0	2	2	2	2	C2H2-type	zinc	finger
zf-C2H2_4	PF13894.1	gi|408404586|ref|YP_006862569.1|	-	8.5e-06	25.7	4.3	0.048	14.0	0.7	2.4	2	1	0	2	2	2	2	C2H2-type	zinc	finger
zf-C2H2	PF00096.21	gi|408404586|ref|YP_006862569.1|	-	1.6e-05	24.9	4.6	0.025	14.9	0.1	2.3	2	0	0	2	2	2	2	Zinc	finger,	C2H2	type
GATA	PF00320.22	gi|408404586|ref|YP_006862569.1|	-	6e-05	22.3	0.1	0.022	14.0	0.0	2.3	2	0	0	2	2	2	1	GATA	zinc	finger
DUF4187	PF13821.1	gi|408404586|ref|YP_006862569.1|	-	0.0013	18.3	1.9	0.74	9.4	0.0	2.1	1	1	1	2	2	2	2	Domain	of	unknown	function	(DUF4187)
DUF678	PF05077.7	gi|408404586|ref|YP_006862569.1|	-	0.0031	17.4	0.1	1	9.3	0.0	2.1	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF678)
zf-Mss51	PF13824.1	gi|408404586|ref|YP_006862569.1|	-	0.0044	16.8	9.0	0.075	12.9	2.9	2.1	1	1	1	2	2	2	1	Zinc-finger	of	mitochondrial	splicing	suppressor	51
zinc_ribbon_4	PF13717.1	gi|408404586|ref|YP_006862569.1|	-	0.0045	16.6	2.0	0.11	12.2	0.0	2.2	2	0	0	2	2	2	1	zinc-ribbon	domain
zinc_ribbon_5	PF13719.1	gi|408404586|ref|YP_006862569.1|	-	0.0046	16.5	2.3	0.078	12.5	0.0	2.2	2	0	0	2	2	2	1	zinc-ribbon	domain
DZR	PF12773.2	gi|408404586|ref|YP_006862569.1|	-	0.011	15.4	0.8	0.02	14.7	0.5	1.4	1	1	0	1	1	1	0	Double	zinc	ribbon
C1_1	PF00130.17	gi|408404586|ref|YP_006862569.1|	-	0.012	15.3	2.2	0.032	13.9	1.5	1.6	1	1	0	1	1	1	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
Zn-ribbon_8	PF09723.5	gi|408404586|ref|YP_006862569.1|	-	0.035	14.0	2.3	3.6	7.6	0.2	2.2	2	0	0	2	2	2	0	Zinc	ribbon	domain
DUF2318	PF10080.4	gi|408404586|ref|YP_006862569.1|	-	0.037	13.8	1.4	3.7	7.3	0.1	2.1	1	1	1	2	2	2	0	Predicted	membrane	protein	(DUF2318)
Zn_Tnp_IS1595	PF12760.2	gi|408404586|ref|YP_006862569.1|	-	0.038	13.8	0.4	4.1	7.3	0.1	2.1	2	0	0	2	2	2	0	Transposase	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.6	gi|408404586|ref|YP_006862569.1|	-	0.041	13.5	4.0	2.4	7.8	2.8	2.1	1	1	1	2	2	2	0	Putative	transposase	DNA-binding	domain
Elf1	PF05129.8	gi|408404586|ref|YP_006862569.1|	-	0.047	13.3	3.4	2.1	8.0	0.1	2.1	1	1	1	2	2	2	0	Transcription	elongation	factor	Elf1	like
HypA	PF01155.14	gi|408404586|ref|YP_006862569.1|	-	0.052	13.2	1.8	0.086	12.5	1.3	1.5	1	1	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
Prok-RING_1	PF14446.1	gi|408404586|ref|YP_006862569.1|	-	0.058	13.1	6.6	0.53	10.0	0.2	2.2	2	0	0	2	2	2	0	Prokaryotic	RING	finger	family	1
zf-ribbon_3	PF13248.1	gi|408404586|ref|YP_006862569.1|	-	0.071	12.3	1.5	1.4	8.2	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
Baculo_ME53	PF06061.6	gi|408404586|ref|YP_006862569.1|	-	0.08	11.9	1.0	0.1	11.6	0.7	1.2	1	0	0	1	1	1	0	Baculoviridae	ME53
DUF2946	PF11162.3	gi|408404586|ref|YP_006862569.1|	-	0.095	12.9	2.3	0.1	12.7	1.6	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2946)
CpXC	PF14353.1	gi|408404586|ref|YP_006862569.1|	-	0.096	12.6	2.6	0.4	10.6	1.8	1.8	1	1	0	1	1	1	0	CpXC	protein
Rubredoxin	PF00301.15	gi|408404586|ref|YP_006862569.1|	-	0.11	12.3	0.8	0.98	9.3	0.6	2.0	1	1	1	2	2	2	0	Rubredoxin
zf-C2H2_2	PF12756.2	gi|408404586|ref|YP_006862569.1|	-	0.11	12.5	13.0	0.83	9.7	3.1	2.1	1	1	1	2	2	2	0	C2H2	type	zinc-finger	(2	copies)
zf-BED	PF02892.10	gi|408404586|ref|YP_006862569.1|	-	0.11	12.2	8.3	0.34	10.7	0.7	2.3	1	1	1	2	2	2	0	BED	zinc	finger
zf-HYPF	PF07503.7	gi|408404586|ref|YP_006862569.1|	-	0.11	11.8	0.3	7.9	5.9	0.1	2.2	2	0	0	2	2	2	0	HypF	finger
Lar_restr_allev	PF14354.1	gi|408404586|ref|YP_006862569.1|	-	0.13	12.6	2.9	1.6	9.1	0.2	2.1	1	1	1	2	2	2	0	Restriction	alleviation	protein	Lar
Terminase_GpA	PF05876.7	gi|408404586|ref|YP_006862569.1|	-	0.13	10.5	4.0	0.15	10.3	2.8	1.0	1	0	0	1	1	1	0	Phage	terminase	large	subunit	(GpA)
zf-trcl	PF13451.1	gi|408404586|ref|YP_006862569.1|	-	0.14	11.8	3.5	6.2	6.5	0.1	2.2	2	0	0	2	2	2	0	Probable	zinc-binding	domain
DNA_RNApol_7kD	PF03604.8	gi|408404586|ref|YP_006862569.1|	-	0.32	10.4	2.8	5.3	6.6	0.1	2.4	3	0	0	3	3	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
zf-CSL	PF05207.8	gi|408404586|ref|YP_006862569.1|	-	0.36	10.3	2.4	0.9	9.1	1.5	1.7	1	1	0	1	1	1	0	CSL	zinc	finger
DUF2387	PF09526.5	gi|408404586|ref|YP_006862569.1|	-	0.45	10.4	4.2	5.8	6.9	0.6	2.1	1	1	1	2	2	2	0	Probable	metal-binding	protein	(DUF2387)
LIM	PF00412.17	gi|408404586|ref|YP_006862569.1|	-	0.46	10.5	6.5	7.9	6.6	4.5	2.1	1	1	0	1	1	1	0	LIM	domain
zf-H2C2_2	PF13465.1	gi|408404586|ref|YP_006862569.1|	-	0.49	10.7	0.5	0.49	10.7	0.3	3.0	3	0	0	3	3	3	0	Zinc-finger	double	domain
PHD	PF00628.24	gi|408404586|ref|YP_006862569.1|	-	1.3	8.7	5.7	4.8	6.9	1.9	2.1	2	0	0	2	2	2	0	PHD-finger
FYVE	PF01363.16	gi|408404586|ref|YP_006862569.1|	-	1.8	8.5	6.8	35	4.4	4.7	2.1	1	1	0	1	1	1	0	FYVE	zinc	finger
zf-CCHC_6	PF15288.1	gi|408404586|ref|YP_006862569.1|	-	4.8	6.9	8.1	11	5.7	2.0	2.3	2	0	0	2	2	2	0	Zinc	knuckle
DUF3186	PF11382.3	gi|408404587|ref|YP_006862570.1|	-	0.00026	20.2	0.5	0.00034	19.8	0.4	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3186)
Med21	PF11221.3	gi|408404587|ref|YP_006862570.1|	-	0.032	14.2	0.3	0.054	13.4	0.2	1.3	1	0	0	1	1	1	0	Subunit	21	of	Mediator	complex
Herpes_UL6	PF01763.11	gi|408404587|ref|YP_006862570.1|	-	0.057	11.5	0.0	0.071	11.2	0.0	1.1	1	0	0	1	1	1	0	Herpesvirus	UL6	like
MFS_1	PF07690.11	gi|408404588|ref|YP_006862571.1|	-	0.021	13.5	12.6	0.026	13.2	8.7	1.1	1	0	0	1	1	1	0	Major	Facilitator	Superfamily
DUF4161	PF13722.1	gi|408404588|ref|YP_006862571.1|	-	0.55	10.5	4.3	0.6	10.4	1.9	1.9	1	1	1	2	2	2	0	C-terminal	domain	on	CstA	(DUF4161)
HxlR	PF01638.12	gi|408404589|ref|YP_006862572.1|	-	3.6e-22	77.7	0.1	5.1e-22	77.2	0.0	1.2	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
MarR	PF01047.17	gi|408404589|ref|YP_006862572.1|	-	0.003	17.2	0.1	0.0047	16.6	0.1	1.3	1	0	0	1	1	1	1	MarR	family
PadR	PF03551.9	gi|408404589|ref|YP_006862572.1|	-	0.014	15.1	0.0	0.023	14.4	0.0	1.4	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
HTH_34	PF13601.1	gi|408404589|ref|YP_006862572.1|	-	0.018	15.0	0.0	0.025	14.5	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
AAA_10	PF12846.2	gi|408404590|ref|YP_006862573.1|	-	9.9e-38	130.2	0.1	1.7e-24	86.7	0.0	2.3	1	1	1	2	2	2	2	AAA-like	domain
DUF87	PF01935.12	gi|408404590|ref|YP_006862573.1|	-	2.6e-09	37.2	0.0	5.1e-09	36.2	0.0	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF87
TraG-D_C	PF12696.2	gi|408404590|ref|YP_006862573.1|	-	0.0068	16.2	0.0	0.028	14.2	0.0	2.0	2	0	0	2	2	2	1	TraM	recognition	site	of	TraD	and	TraG
TrwB_AAD_bind	PF10412.4	gi|408404590|ref|YP_006862573.1|	-	0.0085	14.7	0.0	1.7	7.1	0.0	2.3	2	0	0	2	2	2	2	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
YcgR	PF07317.7	gi|408404590|ref|YP_006862573.1|	-	0.036	13.7	0.0	3.8	7.2	0.0	2.5	2	0	0	2	2	2	0	Flagellar	regulator	YcgR
AAA_22	PF13401.1	gi|408404590|ref|YP_006862573.1|	-	0.066	13.3	0.0	1.8	8.6	0.0	2.9	1	1	0	1	1	1	0	AAA	domain
FtsK_SpoIIIE	PF01580.13	gi|408404590|ref|YP_006862573.1|	-	0.086	12.3	0.0	0.41	10.0	0.0	1.9	2	0	0	2	2	2	0	FtsK/SpoIIIE	family
PrgI	PF12666.2	gi|408404591|ref|YP_006862574.1|	-	0.0031	17.6	0.6	0.0048	16.9	0.4	1.2	1	0	0	1	1	1	1	PrgI	family	protein
DUF2635	PF10948.3	gi|408404591|ref|YP_006862574.1|	-	0.029	13.6	0.0	0.064	12.5	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2635)
DUF3955	PF13127.1	gi|408404591|ref|YP_006862574.1|	-	0.079	12.5	6.0	1.1	8.8	0.0	3.2	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF3955)
DUF123	PF01986.11	gi|408404592|ref|YP_006862575.1|	-	2.1e-30	104.7	0.1	2.7e-30	104.4	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF123
GIY-YIG	PF01541.19	gi|408404592|ref|YP_006862575.1|	-	0.026	14.8	0.0	0.04	14.2	0.0	1.5	1	0	0	1	1	1	0	GIY-YIG	catalytic	domain
Ribosomal_L21e	PF01157.13	gi|408404593|ref|YP_006862576.1|	-	0.047	13.4	0.0	0.057	13.2	0.0	1.1	1	0	0	1	1	1	0	Ribosomal	protein	L21e
Acetyltransf_7	PF13508.1	gi|408404594|ref|YP_006862577.1|	-	9.2e-08	32.1	0.2	1.3e-07	31.6	0.1	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.19	gi|408404594|ref|YP_006862577.1|	-	7.3e-06	25.9	0.1	1.1e-05	25.3	0.1	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_6	PF13480.1	gi|408404594|ref|YP_006862577.1|	-	0.017	15.0	0.0	0.036	14.0	0.0	1.5	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
PUA	PF01472.15	gi|408404594|ref|YP_006862577.1|	-	0.13	11.9	0.1	0.25	11.0	0.1	1.4	1	0	0	1	1	1	0	PUA	domain
Hepcidin	PF06446.7	gi|408404594|ref|YP_006862577.1|	-	0.14	12.6	0.1	0.25	11.7	0.1	1.5	1	0	0	1	1	1	0	Hepcidin
DUF3782	PF12644.2	gi|408404595|ref|YP_006862578.1|	-	0.14	12.0	0.1	0.88	9.4	0.0	1.9	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3782)
Vps36_ESCRT-II	PF11605.3	gi|408404596|ref|YP_006862579.1|	-	0.0098	15.6	0.1	0.018	14.8	0.0	1.5	1	0	0	1	1	1	1	Vacuolar	protein	sorting	protein	36	Vps36
DUF4541	PF15074.1	gi|408404596|ref|YP_006862579.1|	-	0.012	16.1	0.2	0.57	10.7	0.0	2.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4541)
GRAM	PF02893.15	gi|408404596|ref|YP_006862579.1|	-	0.023	14.2	0.0	0.18	11.3	0.0	2.2	2	0	0	2	2	2	0	GRAM	domain
T2SF	PF00482.18	gi|408404598|ref|YP_006862581.1|	-	1.7e-07	31.1	12.0	2.3e-06	27.5	0.0	3.7	3	0	0	3	3	3	2	Type	II	secretion	system	(T2SS),	protein	F
T2SE	PF00437.15	gi|408404599|ref|YP_006862582.1|	-	1.3e-40	139.0	0.0	2e-40	138.4	0.0	1.1	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_18	PF13238.1	gi|408404599|ref|YP_006862582.1|	-	0.00025	21.3	0.0	0.0019	18.5	0.0	2.4	2	0	0	2	2	2	1	AAA	domain
ABC_tran	PF00005.22	gi|408404599|ref|YP_006862582.1|	-	0.00057	20.1	0.0	0.0034	17.6	0.0	2.2	2	0	0	2	2	2	1	ABC	transporter
AAA_29	PF13555.1	gi|408404599|ref|YP_006862582.1|	-	0.0022	17.4	0.4	0.0065	15.9	0.1	1.9	2	0	0	2	2	2	1	P-loop	containing	region	of	AAA	domain
MobB	PF03205.9	gi|408404599|ref|YP_006862582.1|	-	0.02	14.6	0.0	0.32	10.6	0.0	2.4	2	0	0	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
Miro	PF08477.8	gi|408404599|ref|YP_006862582.1|	-	0.021	15.3	0.0	0.29	11.6	0.0	2.6	3	0	0	3	3	3	0	Miro-like	protein
AAA_30	PF13604.1	gi|408404599|ref|YP_006862582.1|	-	0.021	14.4	0.1	0.23	11.0	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
FtsK_SpoIIIE	PF01580.13	gi|408404599|ref|YP_006862582.1|	-	0.023	14.1	1.1	0.039	13.4	0.1	1.8	2	0	0	2	2	2	0	FtsK/SpoIIIE	family
SRP54	PF00448.17	gi|408404599|ref|YP_006862582.1|	-	0.029	13.8	0.7	0.056	12.8	0.2	1.6	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
TrwB_AAD_bind	PF10412.4	gi|408404599|ref|YP_006862582.1|	-	0.038	12.6	0.1	0.064	11.8	0.1	1.3	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
AAA_28	PF13521.1	gi|408404599|ref|YP_006862582.1|	-	0.039	13.9	1.0	0.12	12.3	0.0	2.2	2	1	0	2	2	2	0	AAA	domain
AAA_10	PF12846.2	gi|408404599|ref|YP_006862582.1|	-	0.066	12.6	1.4	0.14	11.5	1.0	1.5	1	0	0	1	1	1	0	AAA-like	domain
cobW	PF02492.14	gi|408404599|ref|YP_006862582.1|	-	0.068	12.6	0.1	0.14	11.6	0.1	1.5	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_17	PF13207.1	gi|408404599|ref|YP_006862582.1|	-	0.077	13.8	0.2	0.47	11.2	0.0	2.4	3	0	0	3	3	3	0	AAA	domain
AAA_22	PF13401.1	gi|408404599|ref|YP_006862582.1|	-	0.079	13.1	0.0	0.21	11.7	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
Zeta_toxin	PF06414.7	gi|408404599|ref|YP_006862582.1|	-	0.11	11.5	0.0	0.53	9.3	0.0	2.0	2	0	0	2	2	2	0	Zeta	toxin
AAA_5	PF07728.9	gi|408404599|ref|YP_006862582.1|	-	0.12	12.1	0.0	1.3	8.7	0.0	2.5	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
AAA_23	PF13476.1	gi|408404599|ref|YP_006862582.1|	-	0.18	12.1	0.0	0.37	11.0	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
DDE_Tnp_1	PF01609.16	gi|408404600|ref|YP_006862583.1|	-	0.0042	16.6	0.2	0.0078	15.7	0.1	1.5	1	1	0	1	1	1	1	Transposase	DDE	domain
DUF1815	PF08844.5	gi|408404600|ref|YP_006862583.1|	-	0.018	14.6	0.2	0.049	13.2	0.0	1.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1815)
I-set	PF07679.11	gi|408404601|ref|YP_006862584.1|	-	2.3e-05	24.1	3.2	3.6	7.5	0.0	7.7	9	0	0	9	9	9	1	Immunoglobulin	I-set	domain
BiPBP_C	PF06832.7	gi|408404601|ref|YP_006862584.1|	-	0.002	18.0	0.6	4.6	7.2	0.0	5.7	5	1	0	6	6	6	1	Penicillin-Binding	Protein	C-terminus	Family
Y_Y_Y	PF07495.8	gi|408404601|ref|YP_006862584.1|	-	0.0054	16.4	5.8	0.55	10.0	0.0	6.0	8	0	0	8	8	8	1	Y_Y_Y	domain
DUF4625	PF15418.1	gi|408404601|ref|YP_006862584.1|	-	0.012	15.7	0.0	49	4.0	0.0	5.4	6	0	0	6	6	6	0	Domain	of	unknown	function	(DUF4625)
A2M_N_2	PF07703.9	gi|408404601|ref|YP_006862584.1|	-	0.015	15.1	12.9	1.8	8.3	0.0	5.5	4	2	0	4	4	4	0	Alpha-2-macroglobulin	family	N-terminal	region
CopC	PF04234.7	gi|408404601|ref|YP_006862584.1|	-	0.061	13.9	13.4	2.1	8.9	0.0	6.6	9	0	0	9	9	9	0	CopC	domain
NPCBM_assoc	PF10633.4	gi|408404601|ref|YP_006862584.1|	-	0.11	12.5	43.5	0.9	9.6	0.1	10.5	9	0	0	9	9	9	0	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
DUF1966	PF09260.6	gi|408404601|ref|YP_006862584.1|	-	0.59	10.2	14.7	0.041	13.9	0.5	5.7	5	0	0	5	5	5	0	Domain	of	unknown	function	(DUF1966)
Cadherin	PF00028.12	gi|408404601|ref|YP_006862584.1|	-	3.2	8.0	14.2	13	6.0	0.2	6.3	6	0	0	6	6	6	0	Cadherin	domain
DUF1628	PF07790.6	gi|408404602|ref|YP_006862585.1|	-	0.0058	17.3	1.0	0.01	16.5	0.7	1.6	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF1628)
DUF2393	PF09624.5	gi|408404603|ref|YP_006862586.1|	-	0.013	14.9	3.6	0.019	14.5	2.5	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2393)
CBM_4_9	PF02018.12	gi|408404603|ref|YP_006862586.1|	-	0.015	15.3	1.0	1.9	8.4	0.0	2.1	1	1	0	2	2	2	0	Carbohydrate	binding	domain
Cadherin-like	PF12733.2	gi|408404603|ref|YP_006862586.1|	-	0.016	15.4	5.3	0.086	13.1	3.6	2.0	1	1	0	1	1	1	0	Cadherin-like	beta	sandwich	domain
VirB8	PF04335.8	gi|408404603|ref|YP_006862586.1|	-	0.023	14.2	1.1	0.023	14.2	0.7	1.7	1	1	1	2	2	2	0	VirB8	protein
DUF1034	PF06280.7	gi|408404603|ref|YP_006862586.1|	-	0.031	14.6	3.5	0.045	14.1	2.4	1.2	1	0	0	1	1	1	0	Fn3-like	domain	(DUF1034)
fn3	PF00041.16	gi|408404603|ref|YP_006862586.1|	-	0.036	14.1	0.6	0.49	10.5	0.1	2.3	2	0	0	2	2	2	0	Fibronectin	type	III	domain
CARDB	PF07705.6	gi|408404603|ref|YP_006862586.1|	-	0.081	12.9	3.0	0.19	11.8	2.0	1.7	1	1	0	1	1	1	0	CARDB
DUF3426	PF11906.3	gi|408404603|ref|YP_006862586.1|	-	0.091	12.4	0.4	0.15	11.7	0.0	1.5	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3426)
Big_2	PF02368.13	gi|408404603|ref|YP_006862586.1|	-	0.14	12.0	0.5	0.14	12.0	0.3	2.3	1	1	1	2	2	2	0	Bacterial	Ig-like	domain	(group	2)
DUF1628	PF07790.6	gi|408404603|ref|YP_006862586.1|	-	0.44	11.3	5.1	0.28	11.9	2.2	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1628)
ParBc	PF02195.13	gi|408404604|ref|YP_006862587.1|	-	3e-12	46.4	0.0	5.7e-12	45.5	0.0	1.5	1	0	0	1	1	1	1	ParB-like	nuclease	domain
zinc_ribbon_5	PF13719.1	gi|408404604|ref|YP_006862587.1|	-	0.093	12.3	0.9	71	3.0	0.0	3.4	3	0	0	3	3	3	0	zinc-ribbon	domain
PBP1_TM	PF14812.1	gi|408404604|ref|YP_006862587.1|	-	6.6	7.1	7.8	0.5	10.7	1.7	1.8	2	0	0	2	2	2	0	Transmembrane	domain	of	transglycosylase	PBP1	at	N-terminal
DUF3456	PF11938.3	gi|408404605|ref|YP_006862588.1|	-	0.0011	19.0	1.2	0.004	17.1	0.9	1.8	1	1	0	1	1	1	1	TLR4	regulator	and	MIR-interacting	MSAP
TF_Zn_Ribbon	PF08271.7	gi|408404605|ref|YP_006862588.1|	-	0.019	14.3	0.4	0.041	13.1	0.2	1.5	1	0	0	1	1	1	0	TFIIB	zinc-binding
TFIIB	PF00382.14	gi|408404605|ref|YP_006862588.1|	-	0.057	13.2	0.4	9.1	6.1	0.1	2.5	2	0	0	2	2	2	0	Transcription	factor	TFIIB	repeat
HTH_IclR	PF09339.5	gi|408404607|ref|YP_006862590.1|	-	2.5e-06	26.9	0.0	5e-06	25.9	0.0	1.6	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_24	PF13412.1	gi|408404607|ref|YP_006862590.1|	-	3.8e-05	22.9	0.0	7.1e-05	22.1	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.14	gi|408404607|ref|YP_006862590.1|	-	5.6e-05	22.7	0.0	9.2e-05	22.0	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_5	PF01022.15	gi|408404607|ref|YP_006862590.1|	-	7.2e-05	22.3	0.0	0.00018	21.0	0.0	1.7	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.2	gi|408404607|ref|YP_006862590.1|	-	0.00011	21.8	0.0	0.00022	20.8	0.0	1.6	1	1	0	1	1	1	1	MarR	family
FaeA	PF04703.7	gi|408404607|ref|YP_006862590.1|	-	0.00054	20.0	0.0	0.0009	19.3	0.0	1.4	1	0	0	1	1	1	1	FaeA-like	protein
HTH_20	PF12840.2	gi|408404607|ref|YP_006862590.1|	-	0.0014	18.4	0.0	0.0023	17.6	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
SpoIIID	PF12116.3	gi|408404607|ref|YP_006862590.1|	-	0.0014	18.4	0.0	0.003	17.4	0.0	1.5	1	0	0	1	1	1	1	Stage	III	sporulation	protein	D
MarR	PF01047.17	gi|408404607|ref|YP_006862590.1|	-	0.0016	18.0	0.1	0.0052	16.4	0.0	1.8	2	1	0	2	2	2	1	MarR	family
HTH_10	PF04967.7	gi|408404607|ref|YP_006862590.1|	-	0.002	17.6	0.1	0.0035	16.8	0.0	1.3	1	0	0	1	1	1	1	HTH	DNA	binding	domain
Fe_dep_repress	PF01325.14	gi|408404607|ref|YP_006862590.1|	-	0.0028	17.5	0.0	0.0055	16.6	0.0	1.5	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_28	PF13518.1	gi|408404607|ref|YP_006862590.1|	-	0.0029	17.5	0.0	0.0054	16.7	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
DUF4423	PF14394.1	gi|408404607|ref|YP_006862590.1|	-	0.0039	16.7	0.1	0.094	12.2	0.0	2.0	1	1	1	2	2	2	1	Domain	of	unknown	function	(DUF4423)
HTH_23	PF13384.1	gi|408404607|ref|YP_006862590.1|	-	0.0056	16.3	0.0	0.011	15.3	0.0	1.4	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_11	PF08279.7	gi|408404607|ref|YP_006862590.1|	-	0.007	15.9	0.1	0.017	14.7	0.0	1.7	1	0	0	1	1	1	1	HTH	domain
HTH_27	PF13463.1	gi|408404607|ref|YP_006862590.1|	-	0.0093	16.2	0.0	0.25	11.6	0.0	2.3	1	1	1	2	2	2	1	Winged	helix	DNA-binding	domain
GntR	PF00392.16	gi|408404607|ref|YP_006862590.1|	-	0.017	14.5	0.1	0.041	13.3	0.0	1.7	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	gntR	family
HTH_Crp_2	PF13545.1	gi|408404607|ref|YP_006862590.1|	-	0.025	14.3	0.0	0.036	13.8	0.0	1.4	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_29	PF13551.1	gi|408404607|ref|YP_006862590.1|	-	0.034	14.2	0.0	0.071	13.2	0.0	1.6	1	0	0	1	1	1	0	Winged	helix-turn	helix
HTH_36	PF13730.1	gi|408404607|ref|YP_006862590.1|	-	0.04	14.0	0.0	0.12	12.5	0.0	1.8	1	1	1	2	2	2	0	Helix-turn-helix	domain
Phage_integrase	PF00589.17	gi|408404608|ref|YP_006862591.1|	-	8.7e-06	25.5	0.0	0.00018	21.2	0.0	2.2	1	1	0	1	1	1	1	Phage	integrase	family
Tad	PF13400.1	gi|408404609|ref|YP_006862592.1|	-	0.72	9.9	4.2	20	5.3	1.3	2.1	2	0	0	2	2	2	0	Putative	Flp	pilus-assembly	TadE/G-like
PepSY_TM	PF03929.11	gi|408404609|ref|YP_006862592.1|	-	8.7	6.9	6.2	8.8	6.9	0.1	2.6	2	1	0	2	2	2	0	PepSY-associated	TM	helix
PQQ	PF01011.16	gi|408404610|ref|YP_006862593.1|	-	0.0024	17.2	0.1	8	6.1	0.0	3.7	3	0	0	3	3	3	2	PQQ	enzyme	repeat
PQQ_2	PF13360.1	gi|408404610|ref|YP_006862593.1|	-	0.04	13.3	0.0	0.8	9.1	0.0	2.5	2	1	0	2	2	2	0	PQQ-like	domain
BCD	PF15461.1	gi|408404611|ref|YP_006862594.1|	-	0.037	13.4	0.0	0.04	13.3	0.0	1.0	1	0	0	1	1	1	0	Beta-carotene	15,15'-dioxygenase
DUF4064	PF13273.1	gi|408404611|ref|YP_006862594.1|	-	2.3	8.3	4.7	0.69	10.0	0.6	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4064)
PepSY	PF03413.14	gi|408404612|ref|YP_006862595.1|	-	0.00045	20.8	0.3	0.00097	19.7	0.2	1.6	1	1	0	1	1	1	1	Peptidase	propeptide	and	YPEB	domain
AAA_7	PF12775.2	gi|408404612|ref|YP_006862595.1|	-	0.13	11.3	0.0	0.28	10.2	0.0	1.6	1	1	0	1	1	1	0	P-loop	containing	dynein	motor	region	D3
UPF0233	PF06781.7	gi|408404613|ref|YP_006862596.1|	-	0.27	10.8	1.6	1.1	8.9	0.0	2.0	2	0	0	2	2	2	0	Uncharacterised	protein	family	(UPF0233)
YrhK	PF14145.1	gi|408404613|ref|YP_006862596.1|	-	3.2	7.4	6.6	1.9	8.1	1.3	2.2	1	1	1	2	2	2	0	YrhK-like	protein
HTH_20	PF12840.2	gi|408404615|ref|YP_006862598.1|	-	2.6e-08	33.5	0.0	3.9e-08	32.9	0.0	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
Rrf2	PF02082.15	gi|408404615|ref|YP_006862598.1|	-	1.6e-06	28.1	0.3	2.2e-06	27.7	0.2	1.2	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_5	PF01022.15	gi|408404615|ref|YP_006862598.1|	-	6.1e-05	22.6	0.2	0.00013	21.5	0.1	1.6	1	1	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
RepL	PF05732.6	gi|408404615|ref|YP_006862598.1|	-	0.0006	19.0	0.1	0.00067	18.9	0.0	1.1	1	0	0	1	1	1	1	Firmicute	plasmid	replication	protein	(RepL)
MarR_2	PF12802.2	gi|408404615|ref|YP_006862598.1|	-	0.0009	18.8	0.0	0.0013	18.3	0.0	1.2	1	0	0	1	1	1	1	MarR	family
HTH_34	PF13601.1	gi|408404615|ref|YP_006862598.1|	-	0.0052	16.7	0.1	0.0074	16.3	0.0	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
TrmB	PF01978.14	gi|408404615|ref|YP_006862598.1|	-	0.0063	16.1	0.1	0.0081	15.8	0.1	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_36	PF13730.1	gi|408404615|ref|YP_006862598.1|	-	0.0065	16.5	0.0	0.01	15.9	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_11	PF08279.7	gi|408404615|ref|YP_006862598.1|	-	0.0068	16.0	0.0	0.0097	15.5	0.0	1.2	1	0	0	1	1	1	1	HTH	domain
DUF1495	PF07381.6	gi|408404615|ref|YP_006862598.1|	-	0.026	14.1	0.4	0.049	13.3	0.1	1.5	1	1	1	2	2	2	0	Winged	helix	DNA-binding	domain	(DUF1495)
B-block_TFIIIC	PF04182.7	gi|408404615|ref|YP_006862598.1|	-	0.047	13.5	0.1	0.065	13.0	0.0	1.2	1	0	0	1	1	1	0	B-block	binding	subunit	of	TFIIIC
HTH_24	PF13412.1	gi|408404615|ref|YP_006862598.1|	-	0.06	12.7	0.2	0.14	11.5	0.1	1.6	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
DUF2513	PF10711.4	gi|408404615|ref|YP_006862598.1|	-	0.066	13.2	0.0	0.09	12.8	0.0	1.3	1	1	0	1	1	1	0	Hypothetical	protein	(DUF2513)
HTH_27	PF13463.1	gi|408404615|ref|YP_006862598.1|	-	0.073	13.4	0.0	0.11	12.8	0.0	1.3	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain
DUF2922	PF11148.3	gi|408404615|ref|YP_006862598.1|	-	0.073	12.7	0.0	0.095	12.3	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2922)
DUF4423	PF14394.1	gi|408404615|ref|YP_006862598.1|	-	0.08	12.4	0.0	0.087	12.3	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
AAA_22	PF13401.1	gi|408404616|ref|YP_006862599.1|	-	1e-08	35.4	0.0	2.1e-08	34.3	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
Cdc6_C	PF09079.6	gi|408404616|ref|YP_006862599.1|	-	1.6e-08	34.1	0.0	7.7e-08	31.9	0.1	2.1	3	0	0	3	3	3	1	CDC6,	C	terminal
AAA_16	PF13191.1	gi|408404616|ref|YP_006862599.1|	-	3e-05	24.0	0.0	0.00024	21.1	0.0	2.1	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA	PF00004.24	gi|408404616|ref|YP_006862599.1|	-	0.0025	18.0	0.1	0.0057	16.8	0.1	1.6	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Arch_ATPase	PF01637.13	gi|408404616|ref|YP_006862599.1|	-	0.0072	16.0	1.5	0.037	13.7	0.3	2.4	2	1	0	2	2	2	1	Archaeal	ATPase
AAA_24	PF13479.1	gi|408404616|ref|YP_006862599.1|	-	0.083	12.4	1.0	0.21	11.1	0.7	1.7	1	1	0	1	1	1	0	AAA	domain
DPM3	PF08285.6	gi|408404618|ref|YP_006862601.1|	-	0.066	13.0	0.1	0.078	12.8	0.0	1.1	1	0	0	1	1	1	0	Dolichol-phosphate	mannosyltransferase	subunit	3	(DPM3)
DUF4149	PF13664.1	gi|408404618|ref|YP_006862601.1|	-	0.07	13.2	0.3	0.079	13.0	0.2	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4149)
DUF3185	PF11381.3	gi|408404618|ref|YP_006862601.1|	-	0.24	11.1	2.1	0.93	9.3	0.1	2.2	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3185)
Nitroreductase	PF00881.19	gi|408404619|ref|YP_006862602.1|	-	5.1e-33	114.2	0.0	6.2e-33	113.9	0.0	1.1	1	0	0	1	1	1	1	Nitroreductase	family
Imm43	PF15602.1	gi|408404619|ref|YP_006862602.1|	-	0.011	15.6	0.2	0.072	13.0	0.2	1.9	1	1	0	1	1	1	0	Immunity	protein	43
CBS	PF00571.23	gi|408404621|ref|YP_006862604.1|	-	1.4e-55	184.7	10.7	1.2e-14	53.8	0.1	4.1	4	0	0	4	4	4	4	CBS	domain
DUF4282	PF14110.1	gi|408404622|ref|YP_006862605.1|	-	6.8	6.9	14.2	2.2	8.5	0.9	2.9	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF4282)
PA14	PF07691.7	gi|408404624|ref|YP_006862607.1|	-	0.016	14.8	0.2	0.37	10.4	0.1	2.0	2	0	0	2	2	2	0	PA14	domain
DUF11	PF01345.13	gi|408404624|ref|YP_006862607.1|	-	0.027	14.5	1.0	0.073	13.1	0.7	1.7	1	0	0	1	1	1	0	Domain	of	unknown	function	DUF11
D-aminoacyl_C	PF07908.7	gi|408404624|ref|YP_006862607.1|	-	0.13	11.6	0.2	0.34	10.2	0.2	1.7	1	0	0	1	1	1	0	D-aminoacylase,	C-terminal	region
CarboxypepD_reg	PF13620.1	gi|408404624|ref|YP_006862607.1|	-	3.7	7.6	6.5	5.7	7.0	0.4	2.9	2	1	0	2	2	2	0	Carboxypeptidase	regulatory-like	domain
RDD	PF06271.7	gi|408404625|ref|YP_006862608.1|	-	2.1e-18	66.5	3.5	2.1e-18	66.5	2.4	1.6	2	0	0	2	2	2	1	RDD	family
PIRT	PF15099.1	gi|408404625|ref|YP_006862608.1|	-	0.094	11.9	0.1	0.18	11.0	0.0	1.4	1	0	0	1	1	1	0	Phosphoinositide-interacting	protein	family
DUF3040	PF11239.3	gi|408404625|ref|YP_006862608.1|	-	0.16	12.0	0.7	0.72	9.9	0.0	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3040)
RseC_MucC	PF04246.7	gi|408404626|ref|YP_006862609.1|	-	0.32	10.5	8.9	0.5	9.9	0.1	2.6	2	1	0	3	3	3	0	Positive	regulator	of	sigma(E),	RseC/MucC
DUF373	PF04123.8	gi|408404626|ref|YP_006862609.1|	-	0.49	9.3	5.4	0.6	9.0	3.7	1.2	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF373)
LIM	PF00412.17	gi|408404628|ref|YP_006862611.1|	-	0.00013	21.9	1.0	0.00059	19.8	0.7	1.9	1	1	1	2	2	2	1	LIM	domain
zf-ribbon_3	PF13248.1	gi|408404628|ref|YP_006862611.1|	-	0.0017	17.5	5.3	4.1	6.7	0.1	3.2	3	0	0	3	3	3	0	zinc-ribbon	domain
DZR	PF12773.2	gi|408404628|ref|YP_006862611.1|	-	0.0022	17.7	5.2	0.31	10.8	3.6	2.4	1	1	0	1	1	1	1	Double	zinc	ribbon
GATA	PF00320.22	gi|408404628|ref|YP_006862611.1|	-	0.0053	16.0	0.4	3.4	7.0	0.0	2.6	2	1	0	2	2	2	1	GATA	zinc	finger
Lar_restr_allev	PF14354.1	gi|408404628|ref|YP_006862611.1|	-	0.0089	16.3	2.0	0.0089	16.3	1.4	1.7	1	1	1	2	2	2	1	Restriction	alleviation	protein	Lar
Auto_anti-p27	PF06677.7	gi|408404628|ref|YP_006862611.1|	-	0.01	15.5	7.4	0.67	9.7	0.3	3.1	2	1	0	2	2	2	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
OrfB_Zn_ribbon	PF07282.6	gi|408404628|ref|YP_006862611.1|	-	0.015	14.9	1.8	1.4	8.6	0.8	2.3	1	1	1	2	2	2	0	Putative	transposase	DNA-binding	domain
TF_Zn_Ribbon	PF08271.7	gi|408404628|ref|YP_006862611.1|	-	0.017	14.3	4.3	0.47	9.8	0.1	2.6	3	0	0	3	3	3	0	TFIIB	zinc-binding
Prok-RING_1	PF14446.1	gi|408404628|ref|YP_006862611.1|	-	0.023	14.3	9.5	0.28	10.9	3.2	3.3	2	1	0	2	2	2	0	Prokaryotic	RING	finger	family	1
RRN7	PF11781.3	gi|408404628|ref|YP_006862611.1|	-	0.031	13.7	3.5	13	5.3	0.1	3.2	2	1	1	3	3	3	0	RNA	polymerase	I-specific	transcription	initiation	factor	Rrn7
zf-CCHC_6	PF15288.1	gi|408404628|ref|YP_006862611.1|	-	0.065	12.9	0.3	0.71	9.5	0.0	2.3	2	0	0	2	2	2	0	Zinc	knuckle
DUF678	PF05077.7	gi|408404628|ref|YP_006862611.1|	-	0.072	13.0	2.2	0.78	9.7	0.2	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF678)
Nudix_N_2	PF14803.1	gi|408404628|ref|YP_006862611.1|	-	0.075	12.7	3.7	25	4.6	0.1	3.2	3	0	0	3	3	3	0	Nudix	N-terminal
Siva	PF05458.7	gi|408404628|ref|YP_006862611.1|	-	0.08	12.5	1.1	0.086	12.4	0.7	1.2	1	0	0	1	1	1	0	Cd27	binding	protein	(Siva)
zf-NADH-PPase	PF09297.6	gi|408404628|ref|YP_006862611.1|	-	0.098	12.1	6.1	7.7	6.1	0.2	3.2	3	0	0	3	3	3	0	NADH	pyrophosphatase	zinc	ribbon	domain
FYVE	PF01363.16	gi|408404628|ref|YP_006862611.1|	-	0.099	12.5	3.8	0.38	10.6	2.6	2.0	1	1	0	1	1	1	0	FYVE	zinc	finger
Zn_ribbon_2	PF12674.2	gi|408404628|ref|YP_006862611.1|	-	0.11	12.7	3.1	8.7	6.7	0.6	2.1	1	1	1	2	2	2	0	Putative	zinc	ribbon	domain
DUF1272	PF06906.6	gi|408404628|ref|YP_006862611.1|	-	0.12	12.1	3.8	3.8	7.4	0.7	2.6	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1272)
Endonuclease_7	PF02945.10	gi|408404628|ref|YP_006862611.1|	-	0.15	11.7	4.4	0.057	13.1	0.5	1.8	1	1	1	2	2	2	0	Recombination	endonuclease	VII
zf-ISL3	PF14690.1	gi|408404628|ref|YP_006862611.1|	-	0.16	12.0	4.0	10	6.2	0.1	3.0	2	1	1	3	3	3	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
DUF2256	PF10013.4	gi|408404628|ref|YP_006862611.1|	-	0.21	11.3	4.9	0.22	11.3	0.0	2.5	3	0	0	3	3	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2256)
UPF0547	PF10571.4	gi|408404628|ref|YP_006862611.1|	-	0.29	10.8	4.5	12	5.7	0.1	3.1	3	0	0	3	3	3	0	Uncharacterised	protein	family	UPF0547
zinc_ribbon_4	PF13717.1	gi|408404628|ref|YP_006862611.1|	-	0.32	10.7	5.4	3	7.6	0.9	3.0	2	1	1	3	3	3	0	zinc-ribbon	domain
Zn_ribbon_recom	PF13408.1	gi|408404628|ref|YP_006862611.1|	-	0.36	11.1	6.1	1.7	8.9	1.8	2.5	1	1	1	2	2	2	0	Recombinase	zinc	beta	ribbon	domain
Cys_rich_KTR	PF14205.1	gi|408404628|ref|YP_006862611.1|	-	0.52	9.8	2.7	9	5.8	0.0	2.3	2	1	0	2	2	2	0	Cysteine-rich	KTR
zf-RING_3	PF14369.1	gi|408404628|ref|YP_006862611.1|	-	0.54	10.3	2.4	1.6	8.8	0.0	2.5	3	1	0	3	3	3	0	zinc-finger
zf-IS66	PF13005.2	gi|408404628|ref|YP_006862611.1|	-	0.68	9.9	4.1	11	6.1	0.0	2.9	2	1	1	3	3	3	0	zinc-finger	binding	domain	of	transposase	IS66
zinc_ribbon_5	PF13719.1	gi|408404628|ref|YP_006862611.1|	-	0.73	9.4	6.1	4.5	6.9	0.1	3.0	2	1	1	3	3	3	0	zinc-ribbon	domain
zinc_ribbon_2	PF13240.1	gi|408404628|ref|YP_006862611.1|	-	0.74	9.3	6.7	6.3	6.4	0.0	3.2	3	0	0	3	3	3	0	zinc-ribbon	domain
C1_1	PF00130.17	gi|408404628|ref|YP_006862611.1|	-	0.77	9.5	6.8	2.8	7.7	0.7	2.9	1	1	1	2	2	2	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
NOB1_Zn_bind	PF08772.6	gi|408404628|ref|YP_006862611.1|	-	1	9.2	6.4	9.3	6.1	0.1	2.5	1	1	0	2	2	2	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
Vps39_2	PF10367.4	gi|408404628|ref|YP_006862611.1|	-	1.1	9.4	3.8	1.8	8.7	0.1	2.2	2	1	0	2	2	2	0	Vacuolar	sorting	protein	39	domain	2
HypA	PF01155.14	gi|408404628|ref|YP_006862611.1|	-	1.1	8.9	3.6	6.8	6.4	0.4	2.2	1	1	1	2	2	2	0	Hydrogenase	expression/synthesis	hypA	family
Yippee-Mis18	PF03226.9	gi|408404628|ref|YP_006862611.1|	-	1.3	9.1	5.2	0.61	10.1	0.5	2.1	1	1	1	2	2	2	0	Yippee	zinc-binding/DNA-binding	/Mis18,	centromere	assembly
Prim_Zn_Ribbon	PF08273.7	gi|408404628|ref|YP_006862611.1|	-	1.5	8.9	7.5	9.1	6.4	1.4	2.8	2	1	0	2	2	2	0	Zinc-binding	domain	of	primase-helicase
zf-B_box	PF00643.19	gi|408404628|ref|YP_006862611.1|	-	1.7	8.6	5.0	30	4.6	0.3	2.9	3	0	0	3	3	3	0	B-box	zinc	finger
zf-HIT	PF04438.11	gi|408404628|ref|YP_006862611.1|	-	2	8.1	5.4	47	3.7	0.1	3.1	3	0	0	3	3	3	0	HIT	zinc	finger
zf-Sec23_Sec24	PF04810.10	gi|408404628|ref|YP_006862611.1|	-	2.6	7.6	5.2	5	6.7	1.6	2.6	2	1	0	2	2	2	0	Sec23/Sec24	zinc	finger
Zn-ribbon_8	PF09723.5	gi|408404628|ref|YP_006862611.1|	-	2.6	8.0	7.4	7.6	6.5	1.1	2.8	1	1	2	3	3	3	0	Zinc	ribbon	domain
DNA_RNApol_7kD	PF03604.8	gi|408404628|ref|YP_006862611.1|	-	7.7	6.0	7.9	4.1	6.9	0.4	2.9	3	0	0	3	3	3	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
zf-C3HC4_3	PF13920.1	gi|408404628|ref|YP_006862611.1|	-	8.7	6.1	7.9	8.8	6.0	0.0	2.7	2	1	0	2	2	2	0	Zinc	finger,	C3HC4	type	(RING	finger)
Usp	PF00582.21	gi|408404629|ref|YP_006862612.1|	-	1.4e-34	119.3	0.2	1.7e-34	119.0	0.1	1.1	1	0	0	1	1	1	1	Universal	stress	protein	family
SRP54	PF00448.17	gi|408404629|ref|YP_006862612.1|	-	0.033	13.6	0.0	0.068	12.5	0.0	1.5	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
DUF3731	PF12531.3	gi|408404629|ref|YP_006862612.1|	-	0.086	12.3	0.0	0.11	12.0	0.0	1.1	1	0	0	1	1	1	0	DNA-K	related	protein
Pterin_bind	PF00809.17	gi|408404629|ref|YP_006862612.1|	-	0.087	12.1	0.2	2.4	7.4	0.0	2.0	2	0	0	2	2	2	0	Pterin	binding	enzyme
CBS	PF00571.23	gi|408404630|ref|YP_006862613.1|	-	4.9e-43	144.6	4.8	9.4e-14	50.9	0.4	4.1	4	0	0	4	4	4	4	CBS	domain
FA_desaturase_2	PF03405.9	gi|408404630|ref|YP_006862613.1|	-	0.056	12.1	0.0	0.072	11.8	0.0	1.2	1	0	0	1	1	1	0	Fatty	acid	desaturase
DUF325	PF03804.8	gi|408404630|ref|YP_006862613.1|	-	0.075	12.7	0.1	0.84	9.3	0.0	2.3	2	0	0	2	2	2	0	Viral	domain	of	unknown	function
ADH_zinc_N	PF00107.21	gi|408404631|ref|YP_006862614.1|	-	4.1e-31	107.2	0.9	4.6e-31	107.0	0.1	1.5	2	0	0	2	2	2	1	Zinc-binding	dehydrogenase
ADH_N	PF08240.7	gi|408404631|ref|YP_006862614.1|	-	6.4e-27	93.4	0.0	1.1e-26	92.7	0.0	1.4	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N_2	PF13602.1	gi|408404631|ref|YP_006862614.1|	-	6.5e-13	49.6	0.1	1.3e-12	48.7	0.1	1.5	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
CoA_binding	PF02629.14	gi|408404631|ref|YP_006862614.1|	-	0.078	13.4	0.2	0.18	12.3	0.1	1.6	1	0	0	1	1	1	0	CoA	binding	domain
ApbA	PF02558.11	gi|408404631|ref|YP_006862614.1|	-	0.11	11.8	0.2	0.19	11.1	0.1	1.3	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
Methyltransf_31	PF13847.1	gi|408404631|ref|YP_006862614.1|	-	0.14	11.7	0.2	0.56	9.7	0.1	1.9	1	1	0	1	1	1	0	Methyltransferase	domain
CBS	PF00571.23	gi|408404632|ref|YP_006862615.1|	-	1.5e-15	56.6	2.8	6.5e-07	29.0	0.0	4.0	4	0	0	4	4	4	3	CBS	domain
HTH_38	PF13936.1	gi|408404633|ref|YP_006862616.1|	-	0.0013	18.2	0.1	0.002	17.6	0.1	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_7	PF02796.10	gi|408404633|ref|YP_006862616.1|	-	0.0046	16.7	0.1	0.0083	15.9	0.1	1.5	1	1	0	1	1	1	1	Helix-turn-helix	domain	of	resolvase
HTH_23	PF13384.1	gi|408404633|ref|YP_006862616.1|	-	0.006	16.2	0.0	0.0091	15.6	0.0	1.3	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_AraC	PF00165.18	gi|408404633|ref|YP_006862616.1|	-	0.0077	16.0	0.1	0.068	13.0	0.0	2.1	2	0	0	2	2	2	1	Bacterial	regulatory	helix-turn-helix	proteins,	AraC	family
HTH_24	PF13412.1	gi|408404633|ref|YP_006862616.1|	-	0.0083	15.4	0.4	0.012	14.9	0.3	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
DUF4116	PF13475.1	gi|408404633|ref|YP_006862616.1|	-	0.021	14.3	0.0	0.025	14.0	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4116)
Sigma70_r4_2	PF08281.7	gi|408404633|ref|YP_006862616.1|	-	0.021	14.2	0.0	0.03	13.8	0.0	1.3	1	0	0	1	1	1	0	Sigma-70,	region	4
RPA_C	PF08784.6	gi|408404633|ref|YP_006862616.1|	-	0.046	14.1	0.0	0.049	14.0	0.0	1.1	1	0	0	1	1	1	0	Replication	protein	A	C	terminal
FeoC	PF09012.5	gi|408404633|ref|YP_006862616.1|	-	0.055	13.1	0.1	0.071	12.8	0.1	1.2	1	0	0	1	1	1	0	FeoC	like	transcriptional	regulator
RNA_pol_Rpc34	PF05158.7	gi|408404633|ref|YP_006862616.1|	-	0.067	12.3	0.1	0.072	12.2	0.0	1.1	1	0	0	1	1	1	0	RNA	polymerase	Rpc34	subunit
HTH_3	PF01381.17	gi|408404633|ref|YP_006862616.1|	-	0.1	12.4	0.4	5.2	7.0	0.0	2.3	1	1	1	2	2	2	0	Helix-turn-helix
MarR_2	PF12802.2	gi|408404633|ref|YP_006862616.1|	-	0.11	12.1	0.0	0.18	11.4	0.0	1.3	1	0	0	1	1	1	0	MarR	family
Abhydrolase_1	PF00561.15	gi|408404636|ref|YP_006862619.1|	-	4.6e-12	45.9	0.0	7.3e-11	42.0	0.0	2.2	1	1	0	1	1	1	1	alpha/beta	hydrolase	fold
Abhydrolase_6	PF12697.2	gi|408404636|ref|YP_006862619.1|	-	1.4e-11	44.7	0.0	3.1e-11	43.5	0.0	1.5	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
DUF3141	PF11339.3	gi|408404636|ref|YP_006862619.1|	-	1.2e-08	33.7	0.1	3.9e-08	32.0	0.0	1.7	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF3141)
Abhydrolase_5	PF12695.2	gi|408404636|ref|YP_006862619.1|	-	1.6e-07	31.1	0.0	0.0056	16.4	0.0	2.2	2	0	0	2	2	2	2	Alpha/beta	hydrolase	family
PhaC_N	PF07167.8	gi|408404636|ref|YP_006862619.1|	-	5.4e-07	29.1	0.0	1e-06	28.2	0.0	1.4	1	0	0	1	1	1	1	Poly-beta-hydroxybutyrate	polymerase	(PhaC)	N-terminus
DLH	PF01738.13	gi|408404636|ref|YP_006862619.1|	-	2.8e-06	26.7	0.0	0.00019	20.7	0.0	2.2	2	0	0	2	2	2	1	Dienelactone	hydrolase	family
FSH1	PF03959.8	gi|408404636|ref|YP_006862619.1|	-	0.00068	19.1	0.0	0.0052	16.2	0.0	2.0	2	0	0	2	2	2	1	Serine	hydrolase	(FSH1)
BAAT_C	PF08840.6	gi|408404636|ref|YP_006862619.1|	-	0.0033	17.1	0.0	0.056	13.1	0.0	2.1	1	1	0	1	1	1	1	BAAT	/	Acyl-CoA	thioester	hydrolase	C	terminal
AXE1	PF05448.7	gi|408404636|ref|YP_006862619.1|	-	0.14	10.6	0.0	0.72	8.2	0.0	1.9	2	0	0	2	2	2	0	Acetyl	xylan	esterase	(AXE1)
CBS	PF00571.23	gi|408404637|ref|YP_006862620.1|	-	6.1e-26	89.9	1.4	3.8e-14	52.1	0.2	2.1	2	0	0	2	2	2	2	CBS	domain
EnY2	PF10163.4	gi|408404637|ref|YP_006862620.1|	-	0.07	13.0	0.2	0.15	11.9	0.0	1.7	2	0	0	2	2	2	0	Transcription	factor	e(y)2
OTCace_N	PF02729.16	gi|408404637|ref|YP_006862620.1|	-	0.12	12.0	1.7	14	5.3	0.1	2.7	1	1	2	3	3	3	0	Aspartate/ornithine	carbamoyltransferase,	carbamoyl-P	binding	domain
Vmethyltransf	PF01660.12	gi|408404637|ref|YP_006862620.1|	-	0.13	10.8	0.0	0.22	10.1	0.0	1.3	1	0	0	1	1	1	0	Viral	methyltransferase
DUF2620	PF10941.3	gi|408404638|ref|YP_006862621.1|	-	0.024	14.6	0.0	0.033	14.2	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	DUF2620
DUF4258	PF14076.1	gi|408404638|ref|YP_006862621.1|	-	0.073	13.0	0.0	0.27	11.2	0.0	2.0	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF4258)
DUF488	PF04343.8	gi|408404639|ref|YP_006862622.1|	-	1.5e-18	67.3	0.1	1.8e-18	67.1	0.1	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF488
Hemerythrin	PF01814.18	gi|408404640|ref|YP_006862623.1|	-	3.1e-11	43.5	8.8	5.4e-08	33.0	2.9	2.0	1	1	1	2	2	2	2	Hemerythrin	HHE	cation	binding	domain
NAAA-beta	PF15508.1	gi|408404640|ref|YP_006862623.1|	-	0.16	12.3	1.4	0.66	10.3	0.2	2.3	1	1	1	2	2	2	0	beta	subunit	of	N-acylethanolamine-hydrolyzing	acid	amidase
DivIVA	PF05103.8	gi|408404640|ref|YP_006862623.1|	-	2.2	8.3	7.4	4.5	7.3	5.1	1.6	1	1	0	1	1	1	0	DivIVA	protein
Fer4_7	PF12838.2	gi|408404641|ref|YP_006862624.1|	-	1.7e-11	44.3	26.6	2.8e-07	30.8	6.5	2.2	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4	PF00037.22	gi|408404641|ref|YP_006862624.1|	-	2.1e-11	42.9	10.2	6.3e-06	25.5	0.6	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_10	PF13237.1	gi|408404641|ref|YP_006862624.1|	-	1.8e-09	37.2	2.3	0.00015	21.4	0.3	2.3	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.2	gi|408404641|ref|YP_006862624.1|	-	4.2e-09	35.8	10.5	2e-05	24.2	2.3	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_9	PF13187.1	gi|408404641|ref|YP_006862624.1|	-	5.1e-09	36.2	5.8	1.8e-08	34.5	4.0	1.8	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_8	PF13183.1	gi|408404641|ref|YP_006862624.1|	-	2.5e-08	33.8	22.3	1.2e-05	25.2	5.0	2.1	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_2	PF12797.2	gi|408404641|ref|YP_006862624.1|	-	1.2e-07	31.2	8.7	0.00087	19.0	1.0	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_16	PF13484.1	gi|408404641|ref|YP_006862624.1|	-	1.6e-07	31.9	3.3	0.00011	22.8	0.5	2.5	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_21	PF14697.1	gi|408404641|ref|YP_006862624.1|	-	3.1e-06	26.9	7.3	0.00018	21.3	5.1	2.2	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_17	PF13534.1	gi|408404641|ref|YP_006862624.1|	-	6.5e-06	26.3	10.5	0.00028	21.1	4.2	2.2	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_18	PF13746.1	gi|408404641|ref|YP_006862624.1|	-	8e-06	26.1	8.2	0.00076	19.8	1.2	2.3	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_4	PF12800.2	gi|408404641|ref|YP_006862624.1|	-	1.2e-05	25.2	7.6	0.021	15.1	1.7	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_15	PF13459.1	gi|408404641|ref|YP_006862624.1|	-	2.5e-05	24.7	7.2	0.011	16.2	0.1	2.8	3	0	0	3	3	2	2	4Fe-4S	single	cluster	domain
Fer4_3	PF12798.2	gi|408404641|ref|YP_006862624.1|	-	0.001	19.4	14.1	0.13	12.9	0.9	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_13	PF13370.1	gi|408404641|ref|YP_006862624.1|	-	0.0015	18.8	12.3	0.035	14.4	0.1	3.0	3	1	1	4	4	4	2	4Fe-4S	single	cluster	domain
Fer4_11	PF13247.1	gi|408404641|ref|YP_006862624.1|	-	0.0072	16.1	0.9	1.6	8.6	0.1	2.2	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Usp	PF00582.21	gi|408404642|ref|YP_006862625.1|	-	3e-31	108.4	0.1	8.7e-31	106.9	0.1	1.6	1	1	0	1	1	1	1	Universal	stress	protein	family
DXP_reductoisom	PF02670.11	gi|408404642|ref|YP_006862625.1|	-	0.033	14.7	0.0	0.045	14.2	0.0	1.3	1	0	0	1	1	1	0	1-deoxy-D-xylulose	5-phosphate	reductoisomerase
GARS_N	PF02844.10	gi|408404642|ref|YP_006862625.1|	-	0.089	13.2	0.2	0.35	11.3	0.1	1.9	1	1	0	1	1	1	0	Phosphoribosylglycinamide	synthetase,	N	domain
DUF2304	PF10066.4	gi|408404643|ref|YP_006862626.1|	-	0.33	10.7	2.8	0.62	9.9	1.9	1.5	1	1	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2304)
VIT1	PF01988.14	gi|408404644|ref|YP_006862627.1|	-	6.2e-69	231.7	2.2	6.9e-69	231.5	1.5	1.0	1	0	0	1	1	1	1	VIT	family
SieB	PF14163.1	gi|408404644|ref|YP_006862627.1|	-	0.034	13.7	7.2	0.043	13.3	0.0	2.6	2	1	1	3	3	3	0	Superinfection	exclusion	protein	B
IncA	PF04156.9	gi|408404644|ref|YP_006862627.1|	-	2.1	7.9	0.0	2.1	7.9	0.0	2.5	2	1	0	3	3	3	0	IncA	protein
RseC_MucC	PF04246.7	gi|408404644|ref|YP_006862627.1|	-	4.6	6.8	6.8	1	8.9	1.0	2.3	2	1	0	2	2	2	0	Positive	regulator	of	sigma(E),	RseC/MucC
AA_permease_2	PF13520.1	gi|408404645|ref|YP_006862628.1|	-	1.1e-57	195.5	55.2	1.3e-57	195.2	38.2	1.0	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease	PF00324.16	gi|408404645|ref|YP_006862628.1|	-	1.8e-34	118.9	53.3	2.1e-34	118.6	36.9	1.0	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease_C	PF13906.1	gi|408404645|ref|YP_006862628.1|	-	1.1	9.1	0.0	1.1	9.1	0.0	6.6	8	1	0	8	8	8	0	C-terminus	of	AA_permease
CBS	PF00571.23	gi|408404646|ref|YP_006862629.1|	-	1.8e-18	66.0	0.4	2.4e-18	65.6	0.3	1.2	1	0	0	1	1	1	1	CBS	domain
PRC	PF05239.11	gi|408404646|ref|YP_006862629.1|	-	0.0039	17.0	0.2	0.16	11.8	0.1	2.2	1	1	1	2	2	2	1	PRC-barrel	domain
Herpes_U5	PF05999.6	gi|408404646|ref|YP_006862629.1|	-	0.031	12.8	0.0	0.032	12.8	0.0	1.0	1	0	0	1	1	1	0	Herpesvirus	U5-like	family
CBS	PF00571.23	gi|408404647|ref|YP_006862630.1|	-	8.7e-26	89.4	4.2	3.6e-14	52.2	0.5	2.5	2	0	0	2	2	2	2	CBS	domain
zf-C2H2_4	PF13894.1	gi|408404647|ref|YP_006862630.1|	-	1.4e-05	25.1	0.1	3.3e-05	23.9	0.1	1.7	1	0	0	1	1	1	1	C2H2-type	zinc	finger
zf-C2H2	PF00096.21	gi|408404647|ref|YP_006862630.1|	-	0.00049	20.2	0.3	0.001	19.3	0.2	1.5	1	0	0	1	1	1	1	Zinc	finger,	C2H2	type
zf-Di19	PF05605.7	gi|408404647|ref|YP_006862630.1|	-	0.005	16.9	0.0	0.013	15.6	0.0	1.6	1	0	0	1	1	1	1	Drought	induced	19	protein	(Di19),	zinc-binding
zf-CHCC	PF10276.4	gi|408404647|ref|YP_006862630.1|	-	0.014	15.2	0.0	0.024	14.4	0.0	1.3	1	0	0	1	1	1	0	Zinc-finger	domain
MTBP_mid	PF14919.1	gi|408404647|ref|YP_006862630.1|	-	0.03	13.0	0.1	0.054	12.1	0.0	1.4	1	1	0	1	1	1	0	MDM2-binding
zinc_ribbon_5	PF13719.1	gi|408404647|ref|YP_006862630.1|	-	0.12	11.9	0.0	0.27	10.8	0.0	1.5	1	0	0	1	1	1	0	zinc-ribbon	domain
zf-C2H2_2	PF12756.2	gi|408404647|ref|YP_006862630.1|	-	0.13	12.4	0.0	0.28	11.3	0.0	1.5	1	0	0	1	1	1	0	C2H2	type	zinc-finger	(2	copies)
zinc_ribbon_4	PF13717.1	gi|408404647|ref|YP_006862630.1|	-	0.15	11.7	0.0	0.31	10.7	0.0	1.5	1	0	0	1	1	1	0	zinc-ribbon	domain
HicB	PF05534.7	gi|408404648|ref|YP_006862631.1|	-	0.0052	16.3	0.0	0.011	15.3	0.0	1.5	1	0	0	1	1	1	1	HicB	family
DUF4415	PF14384.1	gi|408404648|ref|YP_006862631.1|	-	0.0072	16.4	0.0	0.015	15.4	0.0	1.6	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4415)
RHH_1	PF01402.16	gi|408404648|ref|YP_006862631.1|	-	0.051	13.4	0.2	0.12	12.2	0.1	1.7	1	0	0	1	1	1	0	Ribbon-helix-helix	protein,	copG	family
RHH_4	PF13467.1	gi|408404648|ref|YP_006862631.1|	-	0.11	12.3	0.0	0.21	11.5	0.0	1.4	1	0	0	1	1	1	0	Ribbon-helix-helix	domain
Adeno_GP19K	PF04881.8	gi|408404648|ref|YP_006862631.1|	-	0.11	12.1	0.0	0.19	11.4	0.0	1.4	1	0	0	1	1	1	0	Adenovirus	GP19K
SnoaL_4	PF13577.1	gi|408404649|ref|YP_006862632.1|	-	4.1e-05	23.5	0.0	8.9e-05	22.3	0.0	1.5	1	1	0	1	1	1	1	SnoaL-like	domain
SnoaL_2	PF12680.2	gi|408404649|ref|YP_006862632.1|	-	0.00015	22.0	0.0	0.00023	21.5	0.0	1.4	1	1	0	1	1	1	1	SnoaL-like	domain
NTF2	PF02136.15	gi|408404649|ref|YP_006862632.1|	-	0.0041	17.4	0.0	0.006	16.9	0.0	1.3	1	1	0	1	1	1	1	Nuclear	transport	factor	2	(NTF2)	domain
Usp	PF00582.21	gi|408404650|ref|YP_006862633.1|	-	3.8e-28	98.4	0.3	4.4e-28	98.2	0.2	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
zf-C3HC4_3	PF13920.1	gi|408404651|ref|YP_006862634.1|	-	0.051	13.2	2.9	0.087	12.5	2.0	1.4	1	0	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
UPF0547	PF10571.4	gi|408404651|ref|YP_006862634.1|	-	0.1	12.3	0.3	0.1	12.3	0.2	2.1	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
DUF1272	PF06906.6	gi|408404651|ref|YP_006862634.1|	-	0.1	12.4	2.4	0.17	11.7	1.7	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1272)
zf-dskA_traR	PF01258.12	gi|408404651|ref|YP_006862634.1|	-	0.1	12.3	4.0	0.34	10.6	0.4	2.4	2	0	0	2	2	2	0	Prokaryotic	dksA/traR	C4-type	zinc	finger
DUF1451	PF07295.6	gi|408404651|ref|YP_006862634.1|	-	0.27	10.9	1.3	0.34	10.6	0.9	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1451)
Cys_rich_CPCC	PF14206.1	gi|408404651|ref|YP_006862634.1|	-	8	6.1	9.3	2.8	7.5	0.4	2.3	1	1	1	2	2	2	0	Cysteine-rich	CPCC
zf-C2H2_2	PF12756.2	gi|408404652|ref|YP_006862635.1|	-	3.2e-06	27.1	0.0	0.093	12.8	0.0	2.2	2	0	0	2	2	2	2	C2H2	type	zinc-finger	(2	copies)
zf-C2H2_jaz	PF12171.3	gi|408404652|ref|YP_006862635.1|	-	0.053	13.6	4.6	0.52	10.5	0.2	2.3	2	0	0	2	2	2	0	Zinc-finger	double-stranded	RNA-binding
C1_3	PF07649.7	gi|408404652|ref|YP_006862635.1|	-	0.13	12.3	3.0	3	7.9	0.0	2.4	2	0	0	2	2	2	0	C1-like	domain
Zn-ribbon_8	PF09723.5	gi|408404652|ref|YP_006862635.1|	-	0.19	11.7	1.0	14	5.7	0.1	2.4	2	0	0	2	2	2	0	Zinc	ribbon	domain
TFIIS_C	PF01096.13	gi|408404652|ref|YP_006862635.1|	-	3.4	7.3	5.9	8.8	6.0	0.3	2.3	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
Cu-oxidase_3	PF07732.10	gi|408404653|ref|YP_006862636.1|	-	2.9e-25	88.2	4.9	1.5e-21	76.2	0.1	3.4	3	1	0	3	3	3	2	Multicopper	oxidase
Cu-oxidase_2	PF07731.9	gi|408404653|ref|YP_006862636.1|	-	2.6e-22	78.8	4.2	3.8e-10	39.4	0.0	3.4	3	0	0	3	3	3	3	Multicopper	oxidase
Cupredoxin_1	PF13473.1	gi|408404653|ref|YP_006862636.1|	-	3.9e-11	42.7	0.0	2.7e-07	30.3	0.0	3.5	3	1	0	3	3	3	2	Cupredoxin-like	domain
Copper-bind	PF00127.15	gi|408404653|ref|YP_006862636.1|	-	8.3e-11	41.9	2.7	3.4e-07	30.4	0.1	3.6	2	2	0	2	2	2	2	Copper	binding	proteins,	plastocyanin/azurin	family
Cu-oxidase	PF00394.17	gi|408404653|ref|YP_006862636.1|	-	0.00048	20.0	0.0	0.073	12.9	0.0	3.1	2	1	1	3	3	3	1	Multicopper	oxidase
HSP20	PF00011.16	gi|408404654|ref|YP_006862637.1|	-	2.2e-22	78.8	4.1	3.5e-22	78.1	2.8	1.3	1	0	0	1	1	1	1	Hsp20/alpha	crystallin	family
DUF4097	PF13349.1	gi|408404654|ref|YP_006862637.1|	-	0.028	13.9	0.9	0.037	13.5	0.6	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4097)
CS	PF04969.11	gi|408404654|ref|YP_006862637.1|	-	0.17	12.4	2.4	0.47	11.0	1.0	2.0	1	1	1	2	2	2	0	CS	domain
zf-DHHC	PF01529.15	gi|408404655|ref|YP_006862638.1|	-	0.035	13.4	5.5	0.039	13.3	3.8	1.0	1	0	0	1	1	1	0	DHHC	palmitoyltransferase
Fer4_2	PF12797.2	gi|408404655|ref|YP_006862638.1|	-	0.099	12.6	5.5	5.5	7.1	1.5	2.2	2	0	0	2	2	2	0	4Fe-4S	binding	domain
DZR	PF12773.2	gi|408404655|ref|YP_006862638.1|	-	0.15	11.8	8.6	0.79	9.5	5.9	2.1	1	1	0	1	1	1	0	Double	zinc	ribbon
zinc_ribbon_2	PF13240.1	gi|408404655|ref|YP_006862638.1|	-	0.17	11.4	0.7	0.17	11.4	0.5	2.5	2	1	0	2	2	2	0	zinc-ribbon	domain
ADK_lid	PF05191.9	gi|408404655|ref|YP_006862638.1|	-	0.35	10.5	4.8	4.6	6.9	0.1	2.3	2	0	0	2	2	2	0	Adenylate	kinase,	active	site	lid
zf-ribbon_3	PF13248.1	gi|408404655|ref|YP_006862638.1|	-	0.37	10.0	9.5	0.46	9.7	0.6	2.5	1	1	2	3	3	3	0	zinc-ribbon	domain
C1_1	PF00130.17	gi|408404655|ref|YP_006862638.1|	-	0.8	9.4	9.2	1.9	8.2	6.4	1.7	1	1	0	1	1	1	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
NOB1_Zn_bind	PF08772.6	gi|408404655|ref|YP_006862638.1|	-	3.3	7.5	10.6	1.7	8.5	1.9	2.2	1	1	1	2	2	2	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
Zn-ribbon_8	PF09723.5	gi|408404655|ref|YP_006862638.1|	-	3.3	7.7	7.7	0.73	9.8	0.6	2.5	1	1	1	2	2	2	0	Zinc	ribbon	domain
CBS	PF00571.23	gi|408404657|ref|YP_006862640.1|	-	3.1e-24	84.4	3.3	5.7e-12	45.2	0.1	2.2	2	0	0	2	2	2	2	CBS	domain
Acetyltransf_10	PF13673.1	gi|408404657|ref|YP_006862640.1|	-	0.008	16.2	0.0	0.03	14.4	0.0	1.8	1	1	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
COX1	PF00115.15	gi|408404659|ref|YP_006862642.1|	-	0.00092	17.9	10.7	0.00092	17.9	7.5	2.7	1	1	2	3	3	3	1	Cytochrome	C	and	Quinol	oxidase	polypeptide	I
FtsX	PF02687.16	gi|408404659|ref|YP_006862642.1|	-	1.4	8.6	14.2	3.4	7.4	6.5	2.3	1	1	1	2	2	2	0	FtsX-like	permease	family
DUF4500	PF14937.1	gi|408404659|ref|YP_006862642.1|	-	4.9	7.0	5.2	6.5	6.6	0.3	2.5	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF4500)
RseC_MucC	PF04246.7	gi|408404659|ref|YP_006862642.1|	-	9.6	5.7	7.8	3.7	7.1	0.7	2.6	2	1	1	3	3	3	0	Positive	regulator	of	sigma(E),	RseC/MucC
CBS	PF00571.23	gi|408404660|ref|YP_006862643.1|	-	1.7e-25	88.5	0.9	3.2e-13	49.2	0.1	2.5	3	0	0	3	3	3	2	CBS	domain
MarR_2	PF12802.2	gi|408404660|ref|YP_006862643.1|	-	0.0012	18.4	0.0	0.0061	16.1	0.0	2.1	2	0	0	2	2	2	1	MarR	family
HTH_IclR	PF09339.5	gi|408404660|ref|YP_006862643.1|	-	0.015	14.8	0.0	0.12	11.9	0.0	2.2	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
UPF0122	PF04297.9	gi|408404660|ref|YP_006862643.1|	-	0.019	14.9	0.8	0.035	14.1	0.5	1.5	1	1	0	1	1	1	0	Putative	helix-turn-helix	protein,	YlxM	/	p13	like
MarR	PF01047.17	gi|408404660|ref|YP_006862643.1|	-	0.031	13.9	0.1	0.072	12.8	0.0	1.6	1	0	0	1	1	1	0	MarR	family
HTH_24	PF13412.1	gi|408404660|ref|YP_006862643.1|	-	0.04	13.2	0.0	0.079	12.3	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
Sigma70_r4_2	PF08281.7	gi|408404660|ref|YP_006862643.1|	-	0.05	13.0	0.1	0.27	10.7	0.0	2.1	2	0	0	2	2	2	0	Sigma-70,	region	4
PCI	PF01399.22	gi|408404660|ref|YP_006862643.1|	-	0.059	13.6	0.8	0.11	12.7	0.5	1.5	1	0	0	1	1	1	0	PCI	domain
NblA	PF04485.7	gi|408404660|ref|YP_006862643.1|	-	0.27	11.1	1.3	0.41	10.5	0.1	1.9	2	0	0	2	2	2	0	Phycobilisome	degradation	protein	nblA
NAD_kinase	PF01513.16	gi|408404661|ref|YP_006862644.1|	-	3.5e-05	22.7	0.2	0.00011	21.0	0.0	1.8	2	0	0	2	2	2	1	ATP-NAD	kinase
Usp	PF00582.21	gi|408404662|ref|YP_006862645.1|	-	1.6e-34	119.0	0.4	1.9e-34	118.8	0.3	1.1	1	0	0	1	1	1	1	Universal	stress	protein	family
P-II	PF00543.17	gi|408404664|ref|YP_006862647.1|	-	2.1e-15	57.0	0.1	2.3e-15	56.8	0.1	1.0	1	0	0	1	1	1	1	Nitrogen	regulatory	protein	P-II
PAC2	PF09754.4	gi|408404665|ref|YP_006862648.1|	-	2.2e-30	106.1	0.0	2.9e-30	105.7	0.0	1.1	1	0	0	1	1	1	1	PAC2	family
Cpn60_TCP1	PF00118.19	gi|408404666|ref|YP_006862649.1|	-	2.2e-157	524.5	15.2	2.5e-157	524.3	10.5	1.0	1	0	0	1	1	1	1	TCP-1/cpn60	chaperonin	family
zf-C3HC4_3	PF13920.1	gi|408404667|ref|YP_006862650.1|	-	0.12	12.1	4.5	0.15	11.7	3.1	1.2	1	0	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
zf-C2HC5	PF06221.8	gi|408404667|ref|YP_006862650.1|	-	0.13	12.0	5.7	0.3	10.8	4.0	1.7	1	1	0	1	1	1	0	Putative	zinc	finger	motif,	C2HC5-type
zf-CHCC	PF10276.4	gi|408404667|ref|YP_006862650.1|	-	0.79	9.6	0.1	0.79	9.6	0.1	2.5	2	0	0	2	2	2	0	Zinc-finger	domain
Methylase_S	PF01420.14	gi|408404668|ref|YP_006862651.1|	-	0.00084	19.3	0.1	0.0011	19.0	0.1	1.2	1	0	0	1	1	1	1	Type	I	restriction	modification	DNA	specificity	domain
PP2C_C	PF07830.8	gi|408404668|ref|YP_006862651.1|	-	0.0047	16.9	0.1	0.01	15.9	0.0	1.5	1	0	0	1	1	1	1	Protein	serine/threonine	phosphatase	2C,	C-terminal	domain
Sif	PF06767.6	gi|408404668|ref|YP_006862651.1|	-	0.022	13.5	0.2	0.028	13.2	0.1	1.1	1	0	0	1	1	1	0	Sif	protein
DUF2642	PF10842.3	gi|408404668|ref|YP_006862651.1|	-	0.053	13.0	0.1	0.79	9.2	0.0	2.5	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF2642)
PHA_synth_III_E	PF09712.5	gi|408404672|ref|YP_006862655.1|	-	3.4e-17	62.8	0.1	9.4e-17	61.3	0.1	1.8	1	1	0	1	1	1	1	Poly(R)-hydroxyalkanoic	acid	synthase	subunit	(PHA_synth_III_E)
DUF2730	PF10805.3	gi|408404672|ref|YP_006862655.1|	-	0.0037	16.9	0.2	0.24	11.1	0.0	2.7	2	1	1	3	3	3	1	Protein	of	unknown	function	(DUF2730)
Phasin	PF05597.6	gi|408404672|ref|YP_006862655.1|	-	0.028	14.2	0.2	0.065	13.0	0.1	1.7	1	1	1	2	2	2	0	Poly(hydroxyalcanoate)	granule	associated	protein	(phasin)
SHNi-TPR	PF10516.4	gi|408404672|ref|YP_006862655.1|	-	0.14	11.3	1.0	7.1	5.9	0.0	2.5	2	0	0	2	2	2	0	SHNi-TPR
Rootletin	PF15035.1	gi|408404672|ref|YP_006862655.1|	-	0.19	11.7	2.6	14	5.6	0.0	3.0	2	1	0	3	3	3	0	Ciliary	rootlet	component,	centrosome	cohesion
Halo_GVPC	PF05465.8	gi|408404672|ref|YP_006862655.1|	-	1.4	8.9	7.4	5.5	7.0	1.2	3.6	4	1	0	4	4	4	0	Halobacterial	gas	vesicle	protein	C	(GVPC)	repeat
Abhydrolase_1	PF00561.15	gi|408404673|ref|YP_006862656.1|	-	8.9e-14	51.5	0.1	8.8e-13	48.3	0.1	2.1	1	1	0	1	1	1	1	alpha/beta	hydrolase	fold
Abhydrolase_6	PF12697.2	gi|408404673|ref|YP_006862656.1|	-	3.3e-11	43.4	0.0	6.2e-11	42.6	0.0	1.3	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
PhaC_N	PF07167.8	gi|408404673|ref|YP_006862656.1|	-	7.5e-11	41.7	0.0	1.3e-10	40.9	0.0	1.4	1	0	0	1	1	1	1	Poly-beta-hydroxybutyrate	polymerase	(PhaC)	N-terminus
Abhydrolase_5	PF12695.2	gi|408404673|ref|YP_006862656.1|	-	5.3e-08	32.7	0.0	1.1e-06	28.4	0.0	2.2	1	1	0	1	1	1	1	Alpha/beta	hydrolase	family
PHB_depo_C	PF06850.6	gi|408404673|ref|YP_006862656.1|	-	0.00031	20.0	0.0	0.0044	16.2	0.0	2.1	2	0	0	2	2	2	1	PHB	de-polymerase	C-terminus
DLH	PF01738.13	gi|408404673|ref|YP_006862656.1|	-	0.0019	17.5	0.0	0.71	9.1	0.0	2.7	2	0	0	2	2	2	2	Dienelactone	hydrolase	family
BAAT_C	PF08840.6	gi|408404673|ref|YP_006862656.1|	-	0.0044	16.7	0.2	0.21	11.2	0.0	2.6	3	0	0	3	3	3	1	BAAT	/	Acyl-CoA	thioester	hydrolase	C	terminal
FSH1	PF03959.8	gi|408404673|ref|YP_006862656.1|	-	0.011	15.1	0.0	0.17	11.3	0.0	2.4	1	1	0	1	1	1	0	Serine	hydrolase	(FSH1)
DUF1626	PF07788.6	gi|408404673|ref|YP_006862656.1|	-	0.074	12.8	0.0	0.23	11.2	0.0	1.9	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1626)
Spt5-NGN	PF03439.8	gi|408404674|ref|YP_006862657.1|	-	0.04	13.6	0.1	0.054	13.2	0.1	1.3	1	0	0	1	1	1	0	Early	transcription	elongation	factor	of	RNA	pol	II,	NGN	section
Hydantoinase_A	PF01968.13	gi|408404676|ref|YP_006862659.1|	-	1.4e-50	172.0	4.4	1.4e-50	172.0	3.0	2.2	2	0	0	2	2	2	1	Hydantoinase/oxoprolinase
Hydant_A_N	PF05378.8	gi|408404676|ref|YP_006862659.1|	-	1.2e-27	96.5	6.3	5.1e-26	91.2	1.3	3.2	3	0	0	3	3	3	2	Hydantoinase/oxoprolinase	N-terminal	region
MutL	PF13941.1	gi|408404676|ref|YP_006862659.1|	-	1.9e-08	33.1	3.7	3.8e-06	25.4	0.4	2.4	2	0	0	2	2	2	2	MutL	protein
FGGY_N	PF00370.16	gi|408404676|ref|YP_006862659.1|	-	3.9e-06	26.3	1.6	1.2e-05	24.7	1.1	1.9	1	1	0	1	1	1	1	FGGY	family	of	carbohydrate	kinases,	N-terminal	domain
BcrAD_BadFG	PF01869.15	gi|408404676|ref|YP_006862659.1|	-	0.00013	21.3	6.2	0.0053	16.0	4.3	3.4	1	1	0	1	1	1	1	BadF/BadG/BcrA/BcrD	ATPase	family
Sua5_yciO_yrdC	PF01300.13	gi|408404677|ref|YP_006862660.1|	-	2.5e-51	173.4	0.0	2.9e-51	173.2	0.0	1.0	1	0	0	1	1	1	1	Telomere	recombination
THUMP	PF02926.12	gi|408404678|ref|YP_006862661.1|	-	3.6e-16	59.3	0.7	4.3e-16	59.0	0.5	1.2	1	0	0	1	1	1	1	THUMP	domain
DUF1512	PF07431.7	gi|408404678|ref|YP_006862661.1|	-	0.015	14.0	0.1	0.021	13.5	0.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1512)
CRS1_YhbY	PF01985.16	gi|408404678|ref|YP_006862661.1|	-	0.02	14.9	0.1	0.09	12.7	0.0	1.9	2	0	0	2	2	2	0	CRS1	/	YhbY	(CRM)	domain
Pyridox_oxidase	PF01243.15	gi|408404679|ref|YP_006862662.1|	-	3.2e-09	36.6	0.0	4e-09	36.3	0.0	1.2	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Pyridox_ox_2	PF12900.2	gi|408404679|ref|YP_006862662.1|	-	0.0011	18.7	0.0	0.0013	18.5	0.0	1.3	1	1	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
DUF385	PF04075.9	gi|408404679|ref|YP_006862662.1|	-	0.0045	16.9	0.1	0.0066	16.4	0.0	1.3	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF385)
CGI-121	PF08617.5	gi|408404680|ref|YP_006862663.1|	-	3.8e-12	46.1	0.0	5.4e-12	45.6	0.0	1.2	1	0	0	1	1	1	1	Kinase	binding	protein	CGI-121
ThiS	PF02597.15	gi|408404680|ref|YP_006862663.1|	-	5.7e-08	33.0	1.0	4.6e-07	30.1	0.1	2.5	3	0	0	3	3	3	1	ThiS	family
Urm1	PF09138.6	gi|408404680|ref|YP_006862663.1|	-	0.02	15.0	0.1	0.084	13.0	0.0	2.2	2	1	0	2	2	2	0	Urm1	(Ubiquitin	related	modifier)
DUF1967	PF09269.6	gi|408404680|ref|YP_006862663.1|	-	0.32	10.7	2.8	4.2	7.1	0.0	2.8	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF1967)
Ribosomal_S17e	PF00833.13	gi|408404681|ref|YP_006862664.1|	-	5.7e-17	61.6	0.2	6e-17	61.5	0.2	1.0	1	0	0	1	1	1	1	Ribosomal	S17
DUF4054	PF13262.1	gi|408404681|ref|YP_006862664.1|	-	0.0089	16.2	0.1	0.0093	16.1	0.1	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF4054)
Ribosomal_60s	PF00428.14	gi|408404681|ref|YP_006862664.1|	-	0.016	15.5	4.0	0.016	15.5	2.8	1.2	1	0	0	1	1	1	0	60s	Acidic	ribosomal	protein
Lsr2	PF11774.3	gi|408404681|ref|YP_006862664.1|	-	0.08	12.8	1.6	0.15	12.0	0.8	1.6	1	1	1	2	2	2	0	Lsr2
TatD_DNase	PF01026.16	gi|408404682|ref|YP_006862665.1|	-	1.7e-39	135.5	0.0	2.1e-39	135.2	0.0	1.0	1	0	0	1	1	1	1	TatD	related	DNase
CBFD_NFYB_HMF	PF00808.18	gi|408404683|ref|YP_006862666.1|	-	2.9e-16	59.2	0.2	3.2e-16	59.1	0.1	1.0	1	0	0	1	1	1	1	Histone-like	transcription	factor	(CBF/NF-Y)	and	archaeal	histone
Histone	PF00125.19	gi|408404683|ref|YP_006862666.1|	-	2.5e-11	43.5	0.4	3e-11	43.2	0.3	1.1	1	0	0	1	1	1	1	Core	histone	H2A/H2B/H3/H4
CENP-S	PF15630.1	gi|408404683|ref|YP_006862666.1|	-	0.00022	21.3	0.1	0.00024	21.2	0.1	1.1	1	0	0	1	1	1	1	Kinetochore	component	CENP-S
TAF	PF02969.12	gi|408404683|ref|YP_006862666.1|	-	0.002	18.0	0.4	0.0025	17.7	0.3	1.1	1	0	0	1	1	1	1	TATA	box	binding	protein	associated	factor	(TAF)
Bromo_TP	PF07524.8	gi|408404683|ref|YP_006862666.1|	-	0.01	15.5	0.0	0.012	15.3	0.0	1.1	1	0	0	1	1	1	0	Bromodomain	associated
TFIID-31kDa	PF02291.10	gi|408404683|ref|YP_006862666.1|	-	0.011	15.4	0.0	0.013	15.2	0.0	1.0	1	0	0	1	1	1	0	Transcription	initiation	factor	IID,	31kD	subunit
TFIID-18kDa	PF02269.11	gi|408404683|ref|YP_006862666.1|	-	0.019	14.7	0.0	0.021	14.6	0.0	1.1	1	0	0	1	1	1	0	Transcription	initiation	factor	IID,	18kD	subunit
CENP-T	PF15511.1	gi|408404683|ref|YP_006862666.1|	-	0.021	14.0	0.1	0.022	13.9	0.1	1.1	1	0	0	1	1	1	0	Centromere	kinetochore	component	CENP-T
TFIIB	PF00382.14	gi|408404683|ref|YP_006862666.1|	-	0.035	13.8	0.1	0.05	13.4	0.1	1.5	1	0	0	1	1	1	0	Transcription	factor	TFIIB	repeat
GPW_gp25	PF04965.9	gi|408404683|ref|YP_006862666.1|	-	0.053	13.0	0.0	0.053	13.0	0.0	1.1	1	0	0	1	1	1	0	Gene	25-like	lysozyme
ATP-synt_B	PF00430.13	gi|408404683|ref|YP_006862666.1|	-	0.085	12.6	0.6	0.1	12.4	0.4	1.1	1	0	0	1	1	1	0	ATP	synthase	B/B'	CF(0)
TFIID_20kDa	PF03847.8	gi|408404683|ref|YP_006862666.1|	-	0.11	12.8	0.2	0.12	12.6	0.1	1.1	1	0	0	1	1	1	0	Transcription	initiation	factor	TFIID	subunit	A
HK97-gp10_like	PF04883.7	gi|408404683|ref|YP_006862666.1|	-	0.15	12.9	0.5	0.18	12.7	0.4	1.4	1	0	0	1	1	1	0	Bacteriophage	HK97-gp10,	putative	tail-component
DUF4149	PF13664.1	gi|408404686|ref|YP_006862669.1|	-	0.00085	19.3	1.1	0.00096	19.1	0.8	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4149)
DUF3353	PF11833.3	gi|408404686|ref|YP_006862669.1|	-	0.1	12.0	1.4	0.14	11.5	0.9	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3353)
PqqD	PF05402.7	gi|408404689|ref|YP_006862672.1|	-	3e-07	30.3	0.0	3.6e-07	30.1	0.0	1.1	1	0	0	1	1	1	1	Coenzyme	PQQ	synthesis	protein	D	(PqqD)
Prok-JAB	PF14464.1	gi|408404690|ref|YP_006862673.1|	-	1.4e-10	40.7	0.0	2.1e-10	40.1	0.0	1.3	1	0	0	1	1	1	1	Prokaryotic	homologs	of	the	JAB	domain
Toxin-JAB1	PF15659.1	gi|408404690|ref|YP_006862673.1|	-	0.11	12.3	0.2	0.17	11.7	0.2	1.4	1	0	0	1	1	1	0	JAB-like	toxin	1
Cecropin	PF00272.14	gi|408404690|ref|YP_006862673.1|	-	2	8.0	9.1	2.3	7.8	0.2	2.7	2	1	0	2	2	2	0	Cecropin	family
zf-C3HC4_3	PF13920.1	gi|408404691|ref|YP_006862674.1|	-	0.008	15.8	3.1	0.011	15.4	2.1	1.2	1	0	0	1	1	1	1	Zinc	finger,	C3HC4	type	(RING	finger)
DZR	PF12773.2	gi|408404691|ref|YP_006862674.1|	-	0.051	13.4	1.3	0.065	13.0	0.9	1.2	1	0	0	1	1	1	0	Double	zinc	ribbon
PhnA_Zn_Ribbon	PF08274.7	gi|408404691|ref|YP_006862674.1|	-	3.9	7.3	6.8	4.2	7.2	0.2	2.3	2	1	0	2	2	2	0	PhnA	Zinc-Ribbon
zf-NADH-PPase	PF09297.6	gi|408404692|ref|YP_006862675.1|	-	0.0017	17.8	3.1	0.054	13.0	0.3	2.2	2	0	0	2	2	2	1	NADH	pyrophosphatase	zinc	ribbon	domain
Zn-ribbon_8	PF09723.5	gi|408404692|ref|YP_006862675.1|	-	0.01	15.7	5.1	2	8.4	3.5	2.2	1	1	0	1	1	1	0	Zinc	ribbon	domain
TFIIS_C	PF01096.13	gi|408404692|ref|YP_006862675.1|	-	0.018	14.6	3.7	0.17	11.5	0.1	2.2	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
TF_Zn_Ribbon	PF08271.7	gi|408404692|ref|YP_006862675.1|	-	0.043	13.1	1.1	2	7.8	0.0	2.1	2	0	0	2	2	2	0	TFIIB	zinc-binding
DZR	PF12773.2	gi|408404692|ref|YP_006862675.1|	-	0.061	13.1	0.8	0.087	12.6	0.6	1.2	1	0	0	1	1	1	0	Double	zinc	ribbon
Rax2	PF12768.2	gi|408404692|ref|YP_006862675.1|	-	0.081	12.1	0.3	0.094	11.9	0.2	1.1	1	0	0	1	1	1	0	Cortical	protein	marker	for	cell	polarity
YoqO	PF14037.1	gi|408404692|ref|YP_006862675.1|	-	0.12	12.5	0.9	0.14	12.2	0.6	1.1	1	0	0	1	1	1	0	YoqO-like	protein
zf-ISL3	PF14690.1	gi|408404692|ref|YP_006862675.1|	-	0.33	11.0	0.5	0.33	11.0	0.4	2.0	1	1	1	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
zinc_ribbon_2	PF13240.1	gi|408404692|ref|YP_006862675.1|	-	0.56	9.7	3.6	28	4.3	2.8	2.1	1	1	1	2	2	2	0	zinc-ribbon	domain
Peptidase_C74	PF12387.3	gi|408404692|ref|YP_006862675.1|	-	0.64	9.1	3.3	1.1	8.3	0.6	2.0	2	0	0	2	2	2	0	Pestivirus	NS2	peptidase
Ogr_Delta	PF04606.7	gi|408404692|ref|YP_006862675.1|	-	0.72	9.5	5.6	0.97	9.1	0.6	2.2	2	0	0	2	2	2	0	Ogr/Delta-like	zinc	finger
zf-ribbon_3	PF13248.1	gi|408404692|ref|YP_006862675.1|	-	0.79	9.0	4.0	10	5.5	2.8	2.1	1	1	0	1	1	1	0	zinc-ribbon	domain
Zn_Tnp_IS1595	PF12760.2	gi|408404692|ref|YP_006862675.1|	-	1.4	8.7	6.1	8.7	6.2	2.7	2.1	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
Glyco_hydro_14	PF01373.12	gi|408404693|ref|YP_006862676.1|	-	0.0025	16.6	0.0	0.0028	16.4	0.0	1.1	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	14
GNAT_acetyltran	PF12746.2	gi|408404693|ref|YP_006862676.1|	-	0.093	11.5	0.0	0.1	11.4	0.0	1.0	1	0	0	1	1	1	0	GNAT	acetyltransferase
MCM	PF00493.18	gi|408404694|ref|YP_006862677.1|	-	8.6e-07	28.0	0.0	0.0047	15.7	0.0	2.6	2	1	0	2	2	2	2	MCM2/3/5	family
AAA_3	PF07726.6	gi|408404694|ref|YP_006862677.1|	-	3.8e-05	23.2	0.0	0.004	16.7	0.0	2.9	3	0	0	3	3	3	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Sigma54_activat	PF00158.21	gi|408404694|ref|YP_006862677.1|	-	5.1e-05	22.8	0.0	0.00012	21.5	0.0	1.6	2	0	0	2	2	2	1	Sigma-54	interaction	domain
AAA_5	PF07728.9	gi|408404694|ref|YP_006862677.1|	-	0.00062	19.4	0.1	0.041	13.6	0.1	2.2	1	1	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
AAA	PF00004.24	gi|408404694|ref|YP_006862677.1|	-	0.0028	17.8	0.1	0.017	15.3	0.1	2.2	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_22	PF13401.1	gi|408404694|ref|YP_006862677.1|	-	0.013	15.5	0.0	0.22	11.6	0.0	2.1	1	1	2	3	3	3	0	AAA	domain
RuvB_N	PF05496.7	gi|408404694|ref|YP_006862677.1|	-	0.028	13.4	0.0	0.055	12.5	0.0	1.5	1	1	0	1	1	1	0	Holliday	junction	DNA	helicase	ruvB	N-terminus
DNA_pol3_delta2	PF13177.1	gi|408404694|ref|YP_006862677.1|	-	0.078	12.6	0.1	1.2	8.7	0.0	2.6	2	1	0	2	2	2	0	DNA	polymerase	III,	delta	subunit
XPG_I	PF00867.13	gi|408404695|ref|YP_006862678.1|	-	9.6e-24	83.2	0.0	2e-23	82.2	0.0	1.6	1	0	0	1	1	1	1	XPG	I-region
XPG_N	PF00752.12	gi|408404695|ref|YP_006862678.1|	-	1.4e-15	57.3	0.0	2.7e-15	56.4	0.0	1.4	1	0	0	1	1	1	1	XPG	N-terminal	domain
5_3_exonuc	PF01367.15	gi|408404695|ref|YP_006862678.1|	-	5.1e-05	23.4	0.0	0.00012	22.2	0.0	1.6	1	0	0	1	1	1	1	5'-3'	exonuclease,	C-terminal	SAM	fold
HHH_5	PF14520.1	gi|408404695|ref|YP_006862678.1|	-	0.071	13.2	0.0	0.19	11.9	0.0	1.8	1	0	0	1	1	1	0	Helix-hairpin-helix	domain
Transposase_20	PF02371.11	gi|408404695|ref|YP_006862678.1|	-	0.13	12.3	0.0	0.59	10.2	0.0	1.9	2	0	0	2	2	2	0	Transposase	IS116/IS110/IS902	family
MIP	PF00230.15	gi|408404696|ref|YP_006862679.1|	-	1.2e-54	185.2	23.4	1.4e-54	184.9	16.2	1.0	1	0	0	1	1	1	1	Major	intrinsic	protein
Ferritin	PF00210.19	gi|408404697|ref|YP_006862680.1|	-	2.5e-16	59.7	0.0	3.1e-16	59.4	0.0	1.1	1	0	0	1	1	1	1	Ferritin-like	domain
Rubrerythrin	PF02915.12	gi|408404697|ref|YP_006862680.1|	-	0.064	13.5	0.0	0.09	13.0	0.0	1.2	1	0	0	1	1	1	0	Rubrerythrin
Archease	PF01951.11	gi|408404698|ref|YP_006862681.1|	-	2.2e-38	131.3	0.8	2.4e-38	131.1	0.6	1.0	1	0	0	1	1	1	1	Archease	protein	family	(MTH1598/TM1083)
UPF0150	PF03681.10	gi|408404698|ref|YP_006862681.1|	-	0.012	15.2	0.3	0.055	13.0	0.1	2.1	2	0	0	2	2	2	0	Uncharacterised	protein	family	(UPF0150)
Jag_N	PF14804.1	gi|408404698|ref|YP_006862681.1|	-	0.029	14.3	0.5	0.091	12.7	0.1	1.9	2	0	0	2	2	2	0	Jag	N-terminus
tRNA-synt_His	PF13393.1	gi|408404699|ref|YP_006862682.1|	-	9.2e-40	136.6	0.1	1.2e-39	136.1	0.0	1.2	1	0	0	1	1	1	1	Histidyl-tRNA	synthetase
tRNA-synt_2b	PF00587.20	gi|408404699|ref|YP_006862682.1|	-	5.3e-16	58.6	0.1	8.8e-16	57.9	0.1	1.4	1	0	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
HGTP_anticodon	PF03129.15	gi|408404699|ref|YP_006862682.1|	-	1.4e-11	44.1	1.8	2.4e-11	43.4	0.1	2.1	2	0	0	2	2	2	1	Anticodon	binding	domain
tRNA-synt_2d	PF01409.15	gi|408404699|ref|YP_006862682.1|	-	0.022	13.9	0.0	0.038	13.1	0.0	1.4	1	0	0	1	1	1	0	tRNA	synthetases	class	II	core	domain	(F)
FAD_binding_2	PF00890.19	gi|408404702|ref|YP_006862685.1|	-	1.2e-98	330.7	0.2	1.6e-98	330.3	0.1	1.2	1	0	0	1	1	1	1	FAD	binding	domain
Succ_DH_flav_C	PF02910.15	gi|408404702|ref|YP_006862685.1|	-	4.1e-39	133.3	0.3	6.8e-39	132.6	0.2	1.4	1	0	0	1	1	1	1	Fumarate	reductase	flavoprotein	C-term
Pyr_redox_2	PF07992.9	gi|408404702|ref|YP_006862685.1|	-	2.7e-06	27.4	0.1	0.00014	21.8	0.0	2.6	3	0	0	3	3	3	1	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.17	gi|408404702|ref|YP_006862685.1|	-	0.0048	15.8	0.1	0.023	13.5	0.2	1.8	2	0	0	2	2	2	1	Glucose	inhibited	division	protein	A
DAO	PF01266.19	gi|408404702|ref|YP_006862685.1|	-	0.0052	15.7	0.0	0.011	14.6	0.0	1.6	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
FAD_oxidored	PF12831.2	gi|408404702|ref|YP_006862685.1|	-	0.048	12.7	3.0	0.049	12.7	0.5	2.1	2	1	0	2	2	2	0	FAD	dependent	oxidoreductase
HI0933_like	PF03486.9	gi|408404702|ref|YP_006862685.1|	-	0.097	11.1	0.9	0.22	9.9	0.6	1.6	1	0	0	1	1	1	0	HI0933-like	protein
AlaDh_PNT_C	PF01262.16	gi|408404702|ref|YP_006862685.1|	-	0.13	11.8	1.2	0.57	9.7	0.1	2.3	2	0	0	2	2	2	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
Sdh_cyt	PF01127.17	gi|408404703|ref|YP_006862686.1|	-	6.9e-15	54.9	0.3	9.1e-15	54.5	0.2	1.1	1	0	0	1	1	1	1	Succinate	dehydrogenase/Fumarate	reductase	transmembrane	subunit
Fumarate_red_C	PF02300.12	gi|408404703|ref|YP_006862686.1|	-	0.0029	17.4	0.4	0.0052	16.6	0.0	1.6	2	0	0	2	2	2	1	Fumarate	reductase	subunit	C
Ferric_reduct	PF01794.14	gi|408404703|ref|YP_006862686.1|	-	0.018	15.1	0.8	0.057	13.5	0.5	1.7	1	1	0	1	1	1	0	Ferric	reductase	like	transmembrane	component
Sdh_cyt	PF01127.17	gi|408404704|ref|YP_006862687.1|	-	9.7e-09	35.1	6.1	1.3e-08	34.7	4.3	1.2	1	0	0	1	1	1	1	Succinate	dehydrogenase/Fumarate	reductase	transmembrane	subunit
Ferric_reduct	PF01794.14	gi|408404704|ref|YP_006862687.1|	-	0.0025	17.9	7.1	0.0048	16.9	4.9	1.5	1	1	0	1	1	1	1	Ferric	reductase	like	transmembrane	component
DUF4405	PF14358.1	gi|408404704|ref|YP_006862687.1|	-	0.024	14.7	1.1	0.024	14.7	0.7	2.4	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF4405)
DUF2474	PF10617.4	gi|408404704|ref|YP_006862687.1|	-	0.24	11.0	3.0	0.99	9.0	0.4	2.6	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2474)
Serpentine_r_xa	PF03383.10	gi|408404704|ref|YP_006862687.1|	-	0.37	10.5	4.9	0.46	10.2	3.4	1.1	1	0	0	1	1	1	0	Caenorhabditis	serpentine	receptor-like	protein,	class	xa
ABA_GPCR	PF12430.3	gi|408404704|ref|YP_006862687.1|	-	0.68	9.0	4.0	0.63	9.1	0.4	1.9	1	1	1	2	2	2	0	Abscisic	acid	G-protein	coupled	receptor
Arif-1	PF06770.6	gi|408404704|ref|YP_006862687.1|	-	0.95	8.7	5.3	1.2	8.4	3.7	1.1	1	0	0	1	1	1	0	Actin-rearrangement-inducing	factor	(Arif-1)
DUF2231	PF09990.4	gi|408404704|ref|YP_006862687.1|	-	2.7	8.3	7.4	1.2	9.4	1.3	2.4	1	1	0	2	2	2	0	Predicted	membrane	protein	(DUF2231)
Fer2_3	PF13085.1	gi|408404705|ref|YP_006862688.1|	-	1.1e-28	99.1	0.1	4.7e-28	97.1	0.0	1.9	2	0	0	2	2	2	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer4_8	PF13183.1	gi|408404705|ref|YP_006862688.1|	-	6.9e-12	45.2	4.0	2.6e-11	43.3	1.4	2.3	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|408404705|ref|YP_006862688.1|	-	1.6e-08	34.2	5.8	1.9e-08	33.9	1.2	2.3	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_17	PF13534.1	gi|408404705|ref|YP_006862688.1|	-	2e-08	34.4	0.8	2e-08	34.4	0.6	2.3	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_18	PF13746.1	gi|408404705|ref|YP_006862688.1|	-	3.4e-08	33.7	6.6	1.1e-06	28.9	0.8	2.7	2	1	1	3	3	2	2	4Fe-4S	dicluster	domain
Fer4_7	PF12838.2	gi|408404705|ref|YP_006862688.1|	-	2.4e-07	31.0	2.9	2.4e-07	31.0	2.0	2.3	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|408404705|ref|YP_006862688.1|	-	3.3e-07	30.4	2.7	3.3e-07	30.4	1.9	2.4	2	1	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer2	PF00111.22	gi|408404705|ref|YP_006862688.1|	-	6.2e-06	25.8	0.0	1.9e-05	24.3	0.0	1.8	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer4	PF00037.22	gi|408404705|ref|YP_006862688.1|	-	1.2e-05	24.7	1.0	1.2e-05	24.7	0.7	3.1	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_16	PF13484.1	gi|408404705|ref|YP_006862688.1|	-	8.1e-05	23.2	2.6	8.1e-05	23.2	1.8	2.3	2	0	0	2	2	2	1	4Fe-4S	double	cluster	binding	domain
Fer4_2	PF12797.2	gi|408404705|ref|YP_006862688.1|	-	0.00029	20.5	0.5	0.00029	20.5	0.4	3.3	3	0	0	3	3	3	1	4Fe-4S	binding	domain
Fer4_6	PF12837.2	gi|408404705|ref|YP_006862688.1|	-	0.0022	17.7	2.3	0.0022	17.7	1.6	2.9	3	0	0	3	3	2	1	4Fe-4S	binding	domain
Fer4_4	PF12800.2	gi|408404705|ref|YP_006862688.1|	-	0.0037	17.4	1.2	0.0037	17.4	0.8	3.3	3	0	0	3	3	3	1	4Fe-4S	binding	domain
Fer4_21	PF14697.1	gi|408404705|ref|YP_006862688.1|	-	3.6	7.5	15.4	0.25	11.2	5.2	2.7	2	1	0	2	2	1	0	4Fe-4S	dicluster	domain
Fer4_3	PF12798.2	gi|408404705|ref|YP_006862688.1|	-	4.2	8.1	22.7	0.51	11.0	0.5	3.1	3	0	0	3	3	2	0	4Fe-4S	binding	domain
Fer4_15	PF13459.1	gi|408404705|ref|YP_006862688.1|	-	5.6	7.6	8.6	0.97	10.0	0.2	2.7	3	0	0	3	3	2	0	4Fe-4S	single	cluster	domain
DUF59	PF01883.14	gi|408404706|ref|YP_006862689.1|	-	2.7e-14	52.8	0.0	4.1e-14	52.2	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF59
HMA	PF00403.21	gi|408404706|ref|YP_006862689.1|	-	0.01	15.9	0.2	0.14	12.3	0.0	2.3	2	0	0	2	2	2	0	Heavy-metal-associated	domain
2-Hacid_dh_C	PF02826.14	gi|408404708|ref|YP_006862691.1|	-	1.8e-65	219.3	0.0	2.4e-65	219.0	0.0	1.2	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
2-Hacid_dh	PF00389.25	gi|408404708|ref|YP_006862691.1|	-	1.8e-27	95.3	0.0	2.1e-27	95.1	0.0	1.0	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	catalytic	domain
NAD_binding_2	PF03446.10	gi|408404708|ref|YP_006862691.1|	-	0.0076	16.0	0.0	0.014	15.2	0.0	1.5	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
Shikimate_DH	PF01488.15	gi|408404708|ref|YP_006862691.1|	-	0.037	14.1	0.0	0.067	13.2	0.0	1.4	1	0	0	1	1	1	0	Shikimate	/	quinate	5-dehydrogenase
IlvN	PF07991.7	gi|408404708|ref|YP_006862691.1|	-	0.069	12.5	0.1	0.42	9.9	0.0	2.2	2	1	1	3	3	3	0	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
F420_oxidored	PF03807.12	gi|408404708|ref|YP_006862691.1|	-	0.11	12.8	0.2	0.27	11.7	0.2	1.8	1	1	0	1	1	1	0	NADP	oxidoreductase	coenzyme	F420-dependent
Hexapep	PF00132.19	gi|408404709|ref|YP_006862692.1|	-	5.6e-22	76.2	13.3	3.4e-09	35.7	0.2	3.6	2	1	0	3	3	3	3	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.1	gi|408404709|ref|YP_006862692.1|	-	1.6e-13	49.9	9.2	1.2e-05	24.7	0.9	4.2	3	1	1	4	4	4	4	Hexapeptide	repeat	of	succinyl-transferase
Trm112p	PF03966.11	gi|408404710|ref|YP_006862693.1|	-	2e-08	34.4	0.4	6.2e-08	32.8	0.3	1.8	1	1	0	1	1	1	1	Trm112p-like	protein
GFO_IDH_MocA	PF01408.17	gi|408404711|ref|YP_006862694.1|	-	7.2e-28	97.5	0.8	1.1e-27	96.9	0.1	1.6	2	0	0	2	2	2	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
GFO_IDH_MocA_C	PF02894.12	gi|408404711|ref|YP_006862694.1|	-	3.2e-09	36.5	0.0	8.6e-09	35.2	0.0	1.8	1	1	0	1	1	1	1	Oxidoreductase	family,	C-terminal	alpha/beta	domain
IlvN	PF07991.7	gi|408404711|ref|YP_006862694.1|	-	2.8e-06	26.7	0.1	4.6e-06	26.0	0.0	1.4	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
Shikimate_DH	PF01488.15	gi|408404711|ref|YP_006862694.1|	-	4.7e-05	23.4	0.5	0.00014	21.9	0.0	2.0	2	0	0	2	2	2	1	Shikimate	/	quinate	5-dehydrogenase
NAD_binding_2	PF03446.10	gi|408404711|ref|YP_006862694.1|	-	0.00011	22.0	0.6	0.0002	21.2	0.1	1.8	2	1	0	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
2-Hacid_dh_C	PF02826.14	gi|408404711|ref|YP_006862694.1|	-	0.004	16.3	0.1	0.0071	15.5	0.0	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Semialdhyde_dh	PF01118.19	gi|408404711|ref|YP_006862694.1|	-	0.0091	16.2	0.3	0.69	10.2	0.0	2.4	2	0	0	2	2	2	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
DUF2621	PF11084.3	gi|408404711|ref|YP_006862694.1|	-	0.0097	15.5	0.0	0.016	14.8	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2621)
NAD_binding_3	PF03447.11	gi|408404711|ref|YP_006862694.1|	-	0.014	15.7	0.8	1.4	9.3	0.0	2.2	2	0	0	2	2	2	0	Homoserine	dehydrogenase,	NAD	binding	domain
NAD_Gly3P_dh_N	PF01210.18	gi|408404711|ref|YP_006862694.1|	-	0.023	14.4	1.7	0.039	13.6	0.3	2.1	2	1	0	2	2	2	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
CoA_binding	PF02629.14	gi|408404711|ref|YP_006862694.1|	-	0.032	14.7	2.0	0.4	11.2	0.0	3.0	2	1	1	3	3	3	0	CoA	binding	domain
InvH	PF04741.7	gi|408404711|ref|YP_006862694.1|	-	0.045	13.6	0.2	0.076	12.8	0.1	1.3	1	0	0	1	1	1	0	InvH	outer	membrane	lipoprotein
ThiF	PF00899.16	gi|408404711|ref|YP_006862694.1|	-	0.12	12.2	1.7	0.26	11.1	0.1	2.4	3	1	0	3	3	3	0	ThiF	family
AdoHcyase_NAD	PF00670.16	gi|408404711|ref|YP_006862694.1|	-	0.12	12.2	1.4	0.19	11.5	0.1	1.9	2	0	0	2	2	2	0	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
Aminotran_4	PF01063.14	gi|408404712|ref|YP_006862695.1|	-	4.6e-45	153.8	0.0	5.6e-45	153.5	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class	IV
V4R	PF02830.13	gi|408404713|ref|YP_006862696.1|	-	9.4e-12	44.6	0.5	1.5e-11	43.9	0.4	1.3	1	0	0	1	1	1	1	V4R	domain
KAT11	PF08214.6	gi|408404713|ref|YP_006862696.1|	-	0.0037	16.3	0.0	0.0045	16.1	0.0	1.1	1	0	0	1	1	1	1	Histone	acetylation	protein
DeoC	PF01791.4	gi|408404713|ref|YP_006862696.1|	-	0.09	12.0	0.0	0.13	11.4	0.0	1.2	1	0	0	1	1	1	0	DeoC/LacD	family	aldolase
zf-Sec23_Sec24	PF04810.10	gi|408404713|ref|YP_006862696.1|	-	0.69	9.5	0.0	0.69	9.5	0.0	2.4	3	0	0	3	3	3	0	Sec23/Sec24	zinc	finger
OrfB_Zn_ribbon	PF07282.6	gi|408404715|ref|YP_006862698.1|	-	4.4e-05	23.0	0.1	5.3e-05	22.7	0.0	1.2	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
DisA_N	PF02457.11	gi|408404715|ref|YP_006862698.1|	-	0.015	14.4	0.0	0.015	14.3	0.0	1.1	1	0	0	1	1	1	0	DisA	bacterial	checkpoint	controller	nucleotide-binding
DUF2951	PF11166.3	gi|408404716|ref|YP_006862699.1|	-	0.054	13.3	3.7	0.058	13.2	2.5	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2951)
Atrophin-1	PF03154.10	gi|408404716|ref|YP_006862699.1|	-	0.34	8.9	4.6	0.32	9.0	3.2	1.0	1	0	0	1	1	1	0	Atrophin-1	family
Gon7	PF08738.5	gi|408404716|ref|YP_006862699.1|	-	0.42	10.6	4.7	0.5	10.3	3.2	1.1	1	0	0	1	1	1	0	Gon7	family
Alba	PF01918.16	gi|408404717|ref|YP_006862700.1|	-	4e-10	39.1	0.1	5.4e-10	38.7	0.1	1.2	1	0	0	1	1	1	1	Alba
Rpp20	PF12328.3	gi|408404717|ref|YP_006862700.1|	-	0.091	12.4	1.0	1.2	8.8	0.1	2.2	1	1	1	2	2	2	0	Rpp20	subunit	of	nuclear	RNase	MRP	and	P
Methyltransf_31	PF13847.1	gi|408404719|ref|YP_006862702.1|	-	9.3e-17	61.0	0.0	1.6e-16	60.2	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.7	gi|408404719|ref|YP_006862702.1|	-	8.9e-13	48.5	0.0	1.7e-12	47.6	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|408404719|ref|YP_006862702.1|	-	2.6e-10	40.6	0.0	5e-10	39.7	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|408404719|ref|YP_006862702.1|	-	5.9e-10	39.7	0.0	1.3e-09	38.6	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|408404719|ref|YP_006862702.1|	-	2.5e-09	37.0	0.0	5.5e-09	35.9	0.0	1.5	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|408404719|ref|YP_006862702.1|	-	9.2e-09	35.5	0.0	1.8e-08	34.6	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.13	gi|408404719|ref|YP_006862702.1|	-	3.4e-08	32.9	0.0	1.7e-07	30.5	0.0	1.9	1	1	1	2	2	2	1	ubiE/COQ5	methyltransferase	family
Methyltransf_26	PF13659.1	gi|408404719|ref|YP_006862702.1|	-	0.0035	17.3	0.0	0.013	15.5	0.0	1.9	1	1	1	2	2	2	1	Methyltransferase	domain
DREV	PF05219.7	gi|408404719|ref|YP_006862702.1|	-	0.017	14.0	0.0	0.023	13.6	0.0	1.3	1	0	0	1	1	1	0	DREV	methyltransferase
Methyltransf_9	PF08003.6	gi|408404719|ref|YP_006862702.1|	-	0.05	12.2	0.0	0.073	11.7	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1698)
Methyltransf_4	PF02390.12	gi|408404719|ref|YP_006862702.1|	-	0.12	11.3	0.0	0.23	10.4	0.0	1.4	1	0	0	1	1	1	0	Putative	methyltransferase
Trm112p	PF03966.11	gi|408404719|ref|YP_006862702.1|	-	0.13	12.5	0.1	0.25	11.7	0.0	1.5	1	0	0	1	1	1	0	Trm112p-like	protein
MTS	PF05175.9	gi|408404719|ref|YP_006862702.1|	-	0.15	11.3	0.0	0.27	10.5	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	small	domain
SIS	PF01380.17	gi|408404720|ref|YP_006862703.1|	-	7.2e-14	51.5	1.7	6.4e-08	32.2	0.7	2.7	2	1	0	2	2	2	2	SIS	domain
SIS_2	PF13580.1	gi|408404720|ref|YP_006862703.1|	-	0.0084	15.8	2.1	0.016	14.9	0.2	2.3	2	1	1	3	3	3	1	SIS	domain
Rhodanese	PF00581.15	gi|408404721|ref|YP_006862704.1|	-	7.8e-44	148.6	0.1	2.3e-22	79.4	0.0	2.1	2	0	0	2	2	2	2	Rhodanese-like	domain
Fe_dep_repress	PF01325.14	gi|408404723|ref|YP_006862706.1|	-	1.5e-21	76.0	0.8	1.5e-21	76.0	0.5	1.7	2	0	0	2	2	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Fe_dep_repr_C	PF02742.10	gi|408404723|ref|YP_006862706.1|	-	2.1e-14	52.9	0.4	4.3e-14	51.9	0.3	1.5	1	0	0	1	1	1	1	Iron	dependent	repressor,	metal	binding	and	dimerisation	domain
TrmB	PF01978.14	gi|408404723|ref|YP_006862706.1|	-	4.3e-05	23.1	0.1	9.9e-05	21.9	0.1	1.6	1	1	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_27	PF13463.1	gi|408404723|ref|YP_006862706.1|	-	0.00011	22.4	0.0	0.00024	21.3	0.0	1.6	2	0	0	2	2	1	1	Winged	helix	DNA-binding	domain
MarR_2	PF12802.2	gi|408404723|ref|YP_006862706.1|	-	0.00023	20.7	0.0	0.00046	19.8	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.1	gi|408404723|ref|YP_006862706.1|	-	0.00028	20.2	0.2	0.0006	19.1	0.0	1.7	2	0	0	2	2	1	1	Winged	helix-turn-helix	DNA-binding
LexA_DNA_bind	PF01726.11	gi|408404723|ref|YP_006862706.1|	-	0.00028	20.3	0.0	0.00072	19.0	0.0	1.7	2	0	0	2	2	2	1	LexA	DNA	binding	domain
MarR	PF01047.17	gi|408404723|ref|YP_006862706.1|	-	0.00032	20.3	0.1	0.00079	19.0	0.0	1.7	2	0	0	2	2	1	1	MarR	family
HTH_11	PF08279.7	gi|408404723|ref|YP_006862706.1|	-	0.00036	20.1	0.1	0.00097	18.7	0.0	1.8	2	0	0	2	2	2	1	HTH	domain
FeoC	PF09012.5	gi|408404723|ref|YP_006862706.1|	-	0.00069	19.2	0.0	0.0015	18.1	0.0	1.6	2	0	0	2	2	1	1	FeoC	like	transcriptional	regulator
HTH_DeoR	PF08220.7	gi|408404723|ref|YP_006862706.1|	-	0.0012	18.2	0.0	0.015	14.8	0.0	2.4	1	1	1	2	2	2	1	DeoR-like	helix-turn-helix	domain
Rrf2	PF02082.15	gi|408404723|ref|YP_006862706.1|	-	0.0079	16.2	0.0	0.02	14.9	0.0	1.6	1	1	1	2	2	2	1	Transcriptional	regulator
TFIIE_alpha	PF02002.12	gi|408404723|ref|YP_006862706.1|	-	0.009	15.5	0.0	0.016	14.6	0.0	1.5	1	0	0	1	1	1	1	TFIIE	alpha	subunit
DUF977	PF06163.6	gi|408404723|ref|YP_006862706.1|	-	0.017	14.8	0.1	0.03	14.0	0.0	1.4	2	0	0	2	2	1	0	Bacterial	protein	of	unknown	function	(DUF977)
PAX	PF00292.13	gi|408404723|ref|YP_006862706.1|	-	0.027	14.1	0.0	0.038	13.7	0.0	1.2	1	0	0	1	1	1	0	'Paired	box'	domain
TALPID3	PF15324.1	gi|408404723|ref|YP_006862706.1|	-	0.03	11.7	0.1	0.031	11.6	0.1	1.0	1	0	0	1	1	1	0	Hedgehog	signalling	target
EAP30	PF04157.11	gi|408404723|ref|YP_006862706.1|	-	0.041	13.0	0.0	0.058	12.5	0.0	1.3	1	0	0	1	1	1	0	EAP30/Vps36	family
HTH_Crp_2	PF13545.1	gi|408404723|ref|YP_006862706.1|	-	0.052	13.3	0.0	0.12	12.1	0.0	1.6	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_45	PF14947.1	gi|408404723|ref|YP_006862706.1|	-	0.075	12.8	0.9	0.098	12.4	0.1	1.6	2	0	0	2	2	2	0	Winged	helix-turn-helix
DDRGK	PF09756.4	gi|408404723|ref|YP_006862706.1|	-	0.11	11.9	0.1	0.34	10.2	0.0	1.8	2	1	0	2	2	2	0	DDRGK	domain
HTH_23	PF13384.1	gi|408404723|ref|YP_006862706.1|	-	0.11	12.1	0.0	0.26	10.9	0.0	1.7	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_6	PF01418.12	gi|408404723|ref|YP_006862706.1|	-	0.13	12.0	0.0	0.26	11.0	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain,	rpiR	family
HTH_1	PF00126.22	gi|408404723|ref|YP_006862706.1|	-	0.13	11.9	0.0	0.39	10.5	0.0	1.9	1	1	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
T2SE	PF00437.15	gi|408404724|ref|YP_006862707.1|	-	1.9e-13	49.9	0.0	5e-13	48.5	0.0	1.7	1	1	0	1	1	1	1	Type	II/IV	secretion	system	protein
KH_1	PF00013.24	gi|408404724|ref|YP_006862707.1|	-	2e-09	36.9	1.2	6.2e-09	35.3	0.6	2.1	1	1	0	1	1	1	1	KH	domain
KH_3	PF13014.1	gi|408404724|ref|YP_006862707.1|	-	7.7e-07	28.6	0.1	3.7e-06	26.4	0.1	2.3	1	0	0	1	1	1	1	KH	domain
PIN_4	PF13638.1	gi|408404724|ref|YP_006862707.1|	-	3.7e-06	27.0	0.3	2.1e-05	24.6	0.1	2.3	2	1	0	2	2	1	1	PIN	domain
AAA_17	PF13207.1	gi|408404724|ref|YP_006862707.1|	-	7.4e-06	26.7	0.0	9.3e-05	23.2	0.0	2.8	3	0	0	3	3	2	1	AAA	domain
ArgK	PF03308.11	gi|408404724|ref|YP_006862707.1|	-	8.1e-06	24.7	0.0	1.5e-05	23.8	0.0	1.4	1	0	0	1	1	1	1	ArgK	protein
AAA_14	PF13173.1	gi|408404724|ref|YP_006862707.1|	-	1.2e-05	25.2	0.0	5.4e-05	23.0	0.0	2.1	3	0	0	3	3	1	1	AAA	domain
AAA_16	PF13191.1	gi|408404724|ref|YP_006862707.1|	-	1.7e-05	24.9	0.0	3.4e-05	23.9	0.0	1.4	1	0	0	1	1	1	1	AAA	ATPase	domain
AAA_18	PF13238.1	gi|408404724|ref|YP_006862707.1|	-	0.00011	22.4	0.0	0.00031	21.0	0.0	1.9	1	0	0	1	1	1	1	AAA	domain
AAA_25	PF13481.1	gi|408404724|ref|YP_006862707.1|	-	0.00028	20.3	0.0	0.00061	19.2	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_22	PF13401.1	gi|408404724|ref|YP_006862707.1|	-	0.00031	20.8	0.1	0.012	15.7	0.0	2.5	2	0	0	2	2	2	1	AAA	domain
ABC_tran	PF00005.22	gi|408404724|ref|YP_006862707.1|	-	0.00038	20.7	0.0	0.0021	18.3	0.0	2.1	2	0	0	2	2	2	1	ABC	transporter
KH_2	PF07650.12	gi|408404724|ref|YP_006862707.1|	-	0.00068	19.1	0.2	0.0028	17.1	0.2	2.1	1	0	0	1	1	1	1	KH	domain
UPF0278	PF08745.6	gi|408404724|ref|YP_006862707.1|	-	0.0018	17.5	0.0	0.0058	15.8	0.0	2.0	1	0	0	1	1	1	1	UPF0278	family
IstB_IS21	PF01695.12	gi|408404724|ref|YP_006862707.1|	-	0.002	17.5	0.0	0.0042	16.5	0.0	1.5	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
AAA_5	PF07728.9	gi|408404724|ref|YP_006862707.1|	-	0.0031	17.2	0.0	0.0085	15.8	0.0	1.8	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
Zeta_toxin	PF06414.7	gi|408404724|ref|YP_006862707.1|	-	0.0038	16.3	0.1	0.0091	15.1	0.1	1.6	1	0	0	1	1	1	1	Zeta	toxin
AAA_19	PF13245.1	gi|408404724|ref|YP_006862707.1|	-	0.0038	16.9	0.0	0.01	15.5	0.0	1.7	1	0	0	1	1	1	1	Part	of	AAA	domain
AAA_10	PF12846.2	gi|408404724|ref|YP_006862707.1|	-	0.0049	16.3	0.0	0.0082	15.6	0.0	1.4	1	0	0	1	1	1	1	AAA-like	domain
KTI12	PF08433.5	gi|408404724|ref|YP_006862707.1|	-	0.0052	16.0	0.0	0.012	14.7	0.0	1.6	1	0	0	1	1	1	1	Chromatin	associated	protein	KTI12
AAA_30	PF13604.1	gi|408404724|ref|YP_006862707.1|	-	0.0074	15.8	0.0	0.018	14.6	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
AAA_33	PF13671.1	gi|408404724|ref|YP_006862707.1|	-	0.0075	16.1	0.0	0.019	14.8	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
ATP_bind_1	PF03029.12	gi|408404724|ref|YP_006862707.1|	-	0.0089	15.5	0.0	0.016	14.7	0.0	1.4	1	0	0	1	1	1	1	Conserved	hypothetical	ATP	binding	protein
KH_4	PF13083.1	gi|408404724|ref|YP_006862707.1|	-	0.011	15.3	2.0	0.091	12.4	0.0	3.1	3	0	0	3	3	3	0	KH	domain
NTPase_1	PF03266.10	gi|408404724|ref|YP_006862707.1|	-	0.011	15.3	0.0	0.056	13.1	0.0	2.2	2	0	0	2	2	1	0	NTPase
MobB	PF03205.9	gi|408404724|ref|YP_006862707.1|	-	0.012	15.3	0.0	0.035	13.8	0.0	1.8	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA	PF00004.24	gi|408404724|ref|YP_006862707.1|	-	0.013	15.7	0.0	0.04	14.1	0.0	1.9	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_28	PF13521.1	gi|408404724|ref|YP_006862707.1|	-	0.017	15.0	0.0	0.032	14.2	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_29	PF13555.1	gi|408404724|ref|YP_006862707.1|	-	0.018	14.5	0.1	0.058	12.9	0.0	1.8	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
Mg_chelatase	PF01078.16	gi|408404724|ref|YP_006862707.1|	-	0.03	13.4	0.0	0.063	12.4	0.0	1.5	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
PPV_E1_C	PF00519.12	gi|408404724|ref|YP_006862707.1|	-	0.031	12.9	0.0	0.046	12.3	0.0	1.1	1	0	0	1	1	1	0	Papillomavirus	helicase
NACHT	PF05729.7	gi|408404724|ref|YP_006862707.1|	-	0.032	13.9	0.0	0.06	13.0	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
Sigma54_activ_2	PF14532.1	gi|408404724|ref|YP_006862707.1|	-	0.057	13.4	0.0	0.12	12.4	0.0	1.5	1	0	0	1	1	1	0	Sigma-54	interaction	domain
RNA_helicase	PF00910.17	gi|408404724|ref|YP_006862707.1|	-	0.062	13.4	0.0	0.12	12.5	0.0	1.6	1	0	0	1	1	1	0	RNA	helicase
MMR_HSR1	PF01926.18	gi|408404724|ref|YP_006862707.1|	-	0.11	12.4	0.0	0.23	11.3	0.0	1.6	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
NB-ARC	PF00931.17	gi|408404724|ref|YP_006862707.1|	-	0.11	11.2	0.0	0.19	10.5	0.0	1.3	1	0	0	1	1	1	0	NB-ARC	domain
DUF258	PF03193.11	gi|408404724|ref|YP_006862707.1|	-	0.15	11.2	0.0	0.28	10.3	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
P-II	PF00543.17	gi|408404726|ref|YP_006862709.1|	-	8.8e-28	96.7	0.3	1.1e-27	96.4	0.2	1.1	1	0	0	1	1	1	1	Nitrogen	regulatory	protein	P-II
Peptidase_M10	PF00413.19	gi|408404727|ref|YP_006862710.1|	-	1.6e-05	24.6	0.1	2.2e-05	24.2	0.0	1.3	1	1	0	1	1	1	1	Matrixin
Peptidase_M66	PF10462.4	gi|408404727|ref|YP_006862710.1|	-	0.0025	16.7	0.1	0.0036	16.2	0.0	1.2	1	0	0	1	1	1	1	Peptidase	M66
Peptidase_M54	PF07998.6	gi|408404727|ref|YP_006862710.1|	-	0.017	14.8	0.0	0.033	13.9	0.0	1.4	1	0	0	1	1	1	0	Peptidase	family	M54
Metallopep	PF12044.3	gi|408404727|ref|YP_006862710.1|	-	0.034	12.6	0.1	0.049	12.0	0.1	1.1	1	0	0	1	1	1	0	Putative	peptidase	family
DUF3152	PF11350.3	gi|408404727|ref|YP_006862710.1|	-	0.096	12.1	0.5	0.12	11.9	0.3	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3152)
Peptidase_M24	PF00557.19	gi|408404728|ref|YP_006862711.1|	-	4.5e-40	137.4	0.1	5.1e-40	137.2	0.1	1.2	1	0	0	1	1	1	1	Metallopeptidase	family	M24
zf-DNL	PF05180.7	gi|408404729|ref|YP_006862712.1|	-	0.00082	19.0	1.4	0.0011	18.6	0.9	1.2	1	0	0	1	1	1	1	DNL	zinc	finger
Zn-ribbon_8	PF09723.5	gi|408404729|ref|YP_006862712.1|	-	0.037	13.9	0.6	1.8	8.6	0.1	2.2	2	0	0	2	2	2	0	Zinc	ribbon	domain
Nudix_N_2	PF14803.1	gi|408404729|ref|YP_006862712.1|	-	0.069	12.8	1.4	0.24	11.1	0.1	2.0	2	0	0	2	2	2	0	Nudix	N-terminal
HypA	PF01155.14	gi|408404729|ref|YP_006862712.1|	-	0.18	11.5	0.5	0.21	11.2	0.4	1.1	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
TF_Zn_Ribbon	PF08271.7	gi|408404729|ref|YP_006862712.1|	-	0.19	11.0	2.5	2	7.8	0.0	2.3	2	1	1	3	3	3	0	TFIIB	zinc-binding
zinc_ribbon_6	PF14599.1	gi|408404729|ref|YP_006862712.1|	-	0.3	10.8	3.8	0.67	9.7	2.7	1.6	1	1	0	1	1	1	0	Zinc-ribbon
DZR	PF12773.2	gi|408404729|ref|YP_006862712.1|	-	0.6	9.9	3.7	1.5	8.6	2.6	1.7	1	1	0	1	1	1	0	Double	zinc	ribbon
OrfB_Zn_ribbon	PF07282.6	gi|408404729|ref|YP_006862712.1|	-	0.73	9.5	5.2	1.7	8.3	3.6	1.6	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
DUF1512	PF07431.7	gi|408404730|ref|YP_006862713.1|	-	2.3e-106	355.5	11.6	2.5e-106	355.4	8.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1512)
7TM_GPCR_Srz	PF10325.4	gi|408404730|ref|YP_006862713.1|	-	0.43	9.6	3.0	0.26	10.3	0.2	1.9	2	0	0	2	2	2	0	Serpentine	type	7TM	GPCR	chemoreceptor	Srz
Reo_sigmaC	PF04582.7	gi|408404732|ref|YP_006862715.1|	-	0.033	13.3	5.2	0.22	10.6	1.3	2.5	1	1	2	3	3	3	0	Reovirus	sigma	C	capsid	protein
LemA	PF04011.7	gi|408404732|ref|YP_006862715.1|	-	0.051	12.6	21.5	0.033	13.2	8.4	2.4	1	1	1	2	2	2	0	LemA	family
KNOX2	PF03791.8	gi|408404732|ref|YP_006862715.1|	-	0.054	12.7	0.5	0.27	10.5	0.1	2.4	2	0	0	2	2	2	0	KNOX2	domain
UPF0184	PF03670.8	gi|408404732|ref|YP_006862715.1|	-	0.096	12.8	9.6	0.07	13.3	2.8	3.2	2	2	1	3	3	3	0	Uncharacterised	protein	family	(UPF0184)
Vip3A_N	PF12495.3	gi|408404732|ref|YP_006862715.1|	-	0.12	11.9	3.2	1.2	8.7	0.1	2.5	2	0	0	2	2	2	0	Vegetative	insecticide	protein	3A	N	terminal
HN	PF00423.14	gi|408404732|ref|YP_006862715.1|	-	0.14	10.3	2.2	0.2	9.9	1.5	1.3	1	0	0	1	1	1	0	Haemagglutinin-neuraminidase
FlaC_arch	PF05377.6	gi|408404732|ref|YP_006862715.1|	-	0.27	11.1	22.3	10	6.0	4.4	4.8	3	2	1	4	4	4	0	Flagella	accessory	protein	C	(FlaC)
Tweety	PF04906.8	gi|408404732|ref|YP_006862715.1|	-	1.4	7.2	17.4	0.22	9.9	0.8	3.1	1	1	2	3	3	3	0	Tweety
DUF1664	PF07889.7	gi|408404732|ref|YP_006862715.1|	-	3.4	7.4	24.3	0.69	9.7	0.8	3.6	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF1664)
Spc7	PF08317.6	gi|408404732|ref|YP_006862715.1|	-	9.5	4.7	46.4	13	4.3	10.6	3.0	1	1	1	2	2	2	0	Spc7	kinetochore	protein
Peptidase_C65	PF10275.4	gi|408404733|ref|YP_006862716.1|	-	0.045	13.1	0.0	0.062	12.6	0.0	1.2	1	0	0	1	1	1	0	Peptidase	C65	Otubain
Ubie_methyltran	PF01209.13	gi|408404735|ref|YP_006862718.1|	-	3.6e-20	72.0	0.0	4.5e-20	71.7	0.0	1.1	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_11	PF08241.7	gi|408404735|ref|YP_006862718.1|	-	1.2e-18	67.3	0.0	2.8e-18	66.1	0.0	1.6	2	0	0	2	2	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|408404735|ref|YP_006862718.1|	-	8.9e-12	45.0	0.0	1.4e-11	44.4	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|408404735|ref|YP_006862718.1|	-	3e-11	43.1	0.0	3.8e-11	42.7	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|408404735|ref|YP_006862718.1|	-	4e-10	40.2	0.0	7.2e-10	39.4	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|408404735|ref|YP_006862718.1|	-	9.3e-10	38.8	0.0	1.9e-09	37.8	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|408404735|ref|YP_006862718.1|	-	3.3e-09	37.0	0.0	6.6e-09	36.0	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|408404735|ref|YP_006862718.1|	-	3.1e-08	33.6	0.0	9.1e-08	32.1	0.0	1.7	1	1	0	1	1	1	1	Methyltransferase	domain
PrmA	PF06325.8	gi|408404735|ref|YP_006862718.1|	-	5.5e-05	22.4	0.0	9.7e-05	21.6	0.0	1.5	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_24	PF13578.1	gi|408404735|ref|YP_006862718.1|	-	0.0007	20.3	0.0	0.0018	19.0	0.0	1.7	2	0	0	2	2	1	1	Methyltransferase	domain
MTS	PF05175.9	gi|408404735|ref|YP_006862718.1|	-	0.0026	17.1	0.0	0.0053	16.1	0.0	1.6	1	1	0	1	1	1	1	Methyltransferase	small	domain
MetW	PF07021.7	gi|408404735|ref|YP_006862718.1|	-	0.012	14.9	0.0	0.018	14.4	0.0	1.2	1	0	0	1	1	1	0	Methionine	biosynthesis	protein	MetW
NodS	PF05401.6	gi|408404735|ref|YP_006862718.1|	-	0.038	13.3	0.0	0.064	12.6	0.0	1.2	1	0	0	1	1	1	0	Nodulation	protein	S	(NodS)
DUF1538	PF07556.6	gi|408404736|ref|YP_006862719.1|	-	0.011	14.8	6.2	0.0093	15.0	2.8	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1538)
DUF3325	PF11804.3	gi|408404736|ref|YP_006862719.1|	-	0.022	14.6	7.9	5.1	7.0	4.7	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3325)
DUF98	PF01947.11	gi|408404737|ref|YP_006862720.1|	-	0.0015	18.3	0.3	0.016	14.9	0.2	2.3	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF98)
Chordopox_RPO7	PF05864.7	gi|408404737|ref|YP_006862720.1|	-	0.15	12.1	0.6	0.57	10.3	0.1	2.0	2	0	0	2	2	2	0	Chordopoxvirus	DNA-directed	RNA	polymerase	7	kDa	polypeptide	(RPO7)
TCR_zetazeta	PF11628.3	gi|408404738|ref|YP_006862721.1|	-	0.066	12.6	0.1	0.095	12.1	0.0	1.2	1	0	0	1	1	1	0	T-cell	surface	glycoprotein	CD3	zeta	chain
DUF4363	PF14276.1	gi|408404738|ref|YP_006862721.1|	-	0.12	12.1	0.1	0.18	11.5	0.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4363)
NUDIX	PF00293.23	gi|408404739|ref|YP_006862722.1|	-	2.7e-20	72.4	0.0	3.1e-20	72.2	0.0	1.0	1	0	0	1	1	1	1	NUDIX	domain
DUF3357	PF11837.3	gi|408404740|ref|YP_006862723.1|	-	0.0012	18.6	0.1	0.0015	18.3	0.1	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF3357)
Radical_SAM	PF04055.16	gi|408404741|ref|YP_006862724.1|	-	2.6e-13	50.4	0.0	5e-13	49.5	0.0	1.5	1	0	0	1	1	1	1	Radical	SAM	superfamily
B12-binding	PF02310.14	gi|408404741|ref|YP_006862724.1|	-	0.034	14.0	0.0	0.31	10.9	0.0	2.2	2	0	0	2	2	2	0	B12	binding	domain
Laminin_N	PF00055.12	gi|408404741|ref|YP_006862724.1|	-	0.19	10.7	0.0	8.7	5.2	0.0	2.2	2	0	0	2	2	2	0	Laminin	N-terminal	(Domain	VI)
NAD_binding_1	PF00175.16	gi|408404743|ref|YP_006862726.1|	-	6.9e-11	42.6	0.0	1.4e-10	41.6	0.0	1.5	1	0	0	1	1	1	1	Oxidoreductase	NAD-binding	domain
FAD_binding_6	PF00970.19	gi|408404743|ref|YP_006862726.1|	-	9.5e-11	41.7	0.0	1.3e-10	41.2	0.0	1.2	1	0	0	1	1	1	1	Oxidoreductase	FAD-binding	domain
NAD_binding_6	PF08030.7	gi|408404743|ref|YP_006862726.1|	-	0.23	11.3	0.8	0.92	9.3	0.2	2.1	2	1	1	3	3	3	0	Ferric	reductase	NAD	binding	domain
BACK	PF07707.10	gi|408404745|ref|YP_006862728.1|	-	0.12	12.2	0.1	0.14	12.0	0.0	1.1	1	0	0	1	1	1	0	BTB	And	C-terminal	Kelch
RVT_3	PF13456.1	gi|408404750|ref|YP_006862733.1|	-	0.00062	19.4	0.1	0.0029	17.3	0.1	2.0	1	1	0	1	1	1	1	Reverse	transcriptase-like
UPRTase	PF14681.1	gi|408404750|ref|YP_006862733.1|	-	0.1	11.8	0.0	0.16	11.1	0.0	1.3	1	0	0	1	1	1	0	Uracil	phosphoribosyltransferase
Frizzled	PF01534.12	gi|408404753|ref|YP_006862736.1|	-	0.068	11.9	0.0	0.068	11.9	0.0	1.1	1	0	0	1	1	1	0	Frizzled/Smoothened	family	membrane	region
Phage_min_tail	PF05939.8	gi|408404753|ref|YP_006862736.1|	-	0.091	12.7	0.0	0.11	12.4	0.0	1.1	1	0	0	1	1	1	0	Phage	minor	tail	protein
MEDS	PF14417.1	gi|408404754|ref|YP_006862737.1|	-	1.6e-06	27.2	0.4	2.2e-06	26.8	0.3	1.1	1	0	0	1	1	1	1	MEDS:	MEthanogen/methylotroph,	DcmR	Sensory	domain
KaiC	PF06745.8	gi|408404754|ref|YP_006862737.1|	-	7.9e-06	25.1	0.3	9.7e-06	24.8	0.2	1.1	1	0	0	1	1	1	1	KaiC
PEP_mutase	PF13714.1	gi|408404754|ref|YP_006862737.1|	-	0.0051	16.0	0.2	0.0065	15.7	0.1	1.1	1	0	0	1	1	1	1	Phosphoenolpyruvate	phosphomutase
Response_reg	PF00072.19	gi|408404756|ref|YP_006862739.1|	-	3.7e-12	46.2	0.0	1e-11	44.8	0.0	1.7	1	1	0	1	1	1	1	Response	regulator	receiver	domain
NTNH_C	PF08470.5	gi|408404756|ref|YP_006862739.1|	-	0.054	13.1	0.0	0.085	12.4	0.0	1.2	1	0	0	1	1	1	0	Nontoxic	nonhaemagglutinin	C-terminal
HATPase_c	PF02518.21	gi|408404757|ref|YP_006862740.1|	-	1.6e-25	88.9	0.1	2.8e-25	88.1	0.1	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.20	gi|408404757|ref|YP_006862740.1|	-	2.7e-13	49.6	1.8	6.1e-13	48.5	1.3	1.6	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_3	PF13589.1	gi|408404757|ref|YP_006862740.1|	-	0.038	13.6	0.0	0.092	12.4	0.0	1.6	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
DUF261	PF03196.8	gi|408404758|ref|YP_006862741.1|	-	0.03	14.2	0.2	0.047	13.6	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF261
ALIX_LYPXL_bnd	PF13949.1	gi|408404759|ref|YP_006862742.1|	-	0.0047	15.9	0.3	0.0058	15.6	0.2	1.2	1	0	0	1	1	1	1	ALIX	V-shaped	domain	binding	to	HIV
Mer2	PF09074.5	gi|408404759|ref|YP_006862742.1|	-	0.026	14.4	0.7	0.029	14.2	0.5	1.1	1	0	0	1	1	1	0	Mer2
AAA	PF00004.24	gi|408404759|ref|YP_006862742.1|	-	0.046	13.9	0.1	0.051	13.7	0.1	1.2	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
FAA_hydrolase	PF01557.13	gi|408404761|ref|YP_006862744.1|	-	3e-67	226.2	0.0	3.7e-67	225.9	0.0	1.1	1	0	0	1	1	1	1	Fumarylacetoacetate	(FAA)	hydrolase	family
tRNA-synt_1c	PF00749.16	gi|408404762|ref|YP_006862745.1|	-	4.9e-77	258.6	0.0	6.9e-77	258.1	0.0	1.2	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(E	and	Q),	catalytic	domain
tRNA-synt_1c_C	PF03950.13	gi|408404762|ref|YP_006862745.1|	-	5e-30	104.4	0.0	8.7e-30	103.6	0.0	1.4	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(E	and	Q),	anti-codon	binding	domain
polyprenyl_synt	PF00348.12	gi|408404763|ref|YP_006862746.1|	-	6.4e-63	212.0	0.0	8.5e-63	211.6	0.0	1.1	1	0	0	1	1	1	1	Polyprenyl	synthetase
UPF0113	PF03657.8	gi|408404763|ref|YP_006862746.1|	-	0.061	12.9	0.0	0.26	10.9	0.0	2.0	2	0	0	2	2	2	0	Uncharacterised	protein	family	(UPF0113)
FMN_dh	PF01070.13	gi|408404764|ref|YP_006862747.1|	-	6.2e-31	107.5	0.0	1.7e-21	76.4	0.0	2.0	1	1	1	2	2	2	2	FMN-dependent	dehydrogenase
Glu_synthase	PF01645.12	gi|408404764|ref|YP_006862747.1|	-	5.8e-05	22.1	0.7	5.8e-05	22.1	0.5	1.6	2	0	0	2	2	2	1	Conserved	region	in	glutamate	synthase
IMPDH	PF00478.20	gi|408404764|ref|YP_006862747.1|	-	0.00025	20.0	2.0	0.017	14.0	0.1	2.8	2	2	2	4	4	4	2	IMP	dehydrogenase	/	GMP	reductase	domain
NMO	PF03060.10	gi|408404764|ref|YP_006862747.1|	-	0.0014	17.8	0.2	0.0031	16.7	0.1	1.5	1	0	0	1	1	1	1	Nitronate	monooxygenase
His_biosynth	PF00977.16	gi|408404764|ref|YP_006862747.1|	-	0.049	12.8	0.4	0.23	10.7	0.0	2.1	2	0	0	2	2	2	0	Histidine	biosynthesis	protein
DUF561	PF04481.7	gi|408404764|ref|YP_006862747.1|	-	0.081	11.8	0.7	3.9	6.3	0.0	2.6	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF561)
AA_kinase	PF00696.23	gi|408404765|ref|YP_006862748.1|	-	8.7e-28	97.4	0.4	1e-27	97.2	0.2	1.0	1	0	0	1	1	1	1	Amino	acid	kinase	family
HI0933_like	PF03486.9	gi|408404766|ref|YP_006862749.1|	-	0.013	13.9	0.0	0.15	10.5	0.0	2.1	2	0	0	2	2	2	0	HI0933-like	protein
WD40	PF00400.27	gi|408404766|ref|YP_006862749.1|	-	0.11	12.3	0.2	7.2	6.6	0.0	3.6	4	0	0	4	4	4	0	WD	domain,	G-beta	repeat
CTDII	PF01556.13	gi|408404767|ref|YP_006862750.1|	-	0.11	12.3	0.1	0.15	12.0	0.1	1.2	1	0	0	1	1	1	0	DnaJ	C	terminal	domain
TPR_1	PF00515.23	gi|408404768|ref|YP_006862751.1|	-	1e-28	97.7	7.9	2.7e-14	52.0	1.6	4.7	4	0	0	4	4	4	4	Tetratricopeptide	repeat
TPR_11	PF13414.1	gi|408404768|ref|YP_006862751.1|	-	1.7e-27	94.8	4.3	6.5e-16	57.7	0.5	2.7	2	0	0	2	2	2	2	TPR	repeat
TPR_2	PF07719.12	gi|408404768|ref|YP_006862751.1|	-	2.2e-27	92.7	4.9	2.4e-11	42.6	0.5	4.8	4	0	0	4	4	4	4	Tetratricopeptide	repeat
TPR_16	PF13432.1	gi|408404768|ref|YP_006862751.1|	-	1.8e-17	63.4	0.2	5.9e-07	30.0	0.1	3.4	2	1	1	3	3	3	2	Tetratricopeptide	repeat
TPR_17	PF13431.1	gi|408404768|ref|YP_006862751.1|	-	3.7e-17	61.0	3.0	4.7e-06	26.3	0.0	3.8	3	1	0	3	3	3	3	Tetratricopeptide	repeat
TPR_9	PF13371.1	gi|408404768|ref|YP_006862751.1|	-	1e-12	47.7	0.2	7.6e-06	25.6	0.1	2.7	1	1	2	3	3	3	3	Tetratricopeptide	repeat
TPR_12	PF13424.1	gi|408404768|ref|YP_006862751.1|	-	4.7e-12	45.6	1.4	7.8e-08	32.1	0.0	2.7	1	1	1	2	2	2	2	Tetratricopeptide	repeat
TPR_19	PF14559.1	gi|408404768|ref|YP_006862751.1|	-	2.2e-11	43.9	0.1	0.00012	22.3	0.0	2.8	3	0	0	3	3	2	2	Tetratricopeptide	repeat
TPR_14	PF13428.1	gi|408404768|ref|YP_006862751.1|	-	2.8e-11	43.0	0.0	6.5e-05	23.2	0.1	4.4	2	1	3	5	5	4	2	Tetratricopeptide	repeat
TPR_8	PF13181.1	gi|408404768|ref|YP_006862751.1|	-	3.8e-11	41.9	11.1	1.8e-08	33.5	0.9	4.7	5	0	0	5	5	5	2	Tetratricopeptide	repeat
Apc3	PF12895.2	gi|408404768|ref|YP_006862751.1|	-	9.1e-10	38.5	8.7	2.4e-06	27.5	0.3	2.5	1	1	2	3	3	3	3	Anaphase-promoting	complex,	cyclosome,	subunit	3
Fis1_TPR_C	PF14853.1	gi|408404768|ref|YP_006862751.1|	-	1.3e-08	34.5	0.4	0.001	18.8	0.2	2.6	1	1	1	2	2	2	2	Fis1	C-terminal	tetratricopeptide	repeat
TPR_7	PF13176.1	gi|408404768|ref|YP_006862751.1|	-	2.2e-07	30.1	1.6	0.0075	15.9	0.0	3.7	4	0	0	4	4	3	2	Tetratricopeptide	repeat
TPR_6	PF13174.1	gi|408404768|ref|YP_006862751.1|	-	2.1e-05	24.6	4.5	0.0089	16.4	0.0	4.4	6	0	0	6	6	3	1	Tetratricopeptide	repeat
YfiO	PF13525.1	gi|408404768|ref|YP_006862751.1|	-	0.00013	21.4	0.4	0.17	11.3	0.1	2.7	3	0	0	3	3	3	2	Outer	membrane	lipoprotein
NARP1	PF12569.3	gi|408404768|ref|YP_006862751.1|	-	0.0031	16.3	0.1	0.17	10.5	0.0	2.2	1	1	1	2	2	2	1	NMDA	receptor-regulated	protein	1
TPR_20	PF14561.1	gi|408404768|ref|YP_006862751.1|	-	0.016	15.2	0.0	1.4	9.0	0.0	2.6	1	1	1	2	2	2	0	Tetratricopeptide	repeat
TPR_18	PF13512.1	gi|408404768|ref|YP_006862751.1|	-	0.021	14.8	0.7	7.4	6.5	0.0	3.0	1	1	0	2	2	2	0	Tetratricopeptide	repeat
Mitofilin	PF09731.4	gi|408404768|ref|YP_006862751.1|	-	0.067	11.8	0.0	0.12	11.0	0.0	1.3	1	0	0	1	1	1	0	Mitochondrial	inner	membrane	protein
MIT	PF04212.13	gi|408404768|ref|YP_006862751.1|	-	0.13	12.1	2.9	6.3	6.7	0.2	4.0	3	2	1	4	4	4	0	MIT	(microtubule	interacting	and	transport)	domain
NAD_binding_5	PF07994.7	gi|408404769|ref|YP_006862752.1|	-	6.8e-29	101.2	0.0	1.3e-26	93.8	0.0	2.2	1	1	0	1	1	1	1	Myo-inositol-1-phosphate	synthase
Inos-1-P_synth	PF01658.12	gi|408404769|ref|YP_006862752.1|	-	1.6e-13	50.4	0.0	3e-13	49.5	0.0	1.5	1	0	0	1	1	1	1	Myo-inositol-1-phosphate	synthase
CoA_binding	PF02629.14	gi|408404769|ref|YP_006862752.1|	-	0.97	9.9	3.6	1.7	9.1	0.1	2.8	1	1	1	2	2	2	0	CoA	binding	domain
Thi4	PF01946.12	gi|408404770|ref|YP_006862753.1|	-	1.1e-61	207.8	0.0	1.4e-61	207.5	0.0	1.0	1	0	0	1	1	1	1	Thi4	family
FAD_binding_2	PF00890.19	gi|408404770|ref|YP_006862753.1|	-	2.8e-11	42.9	1.2	2.9e-07	29.6	0.1	2.8	2	1	1	3	3	3	2	FAD	binding	domain
FAD_oxidored	PF12831.2	gi|408404770|ref|YP_006862753.1|	-	7.7e-09	35.1	0.0	1.2e-08	34.4	0.0	1.3	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
DAO	PF01266.19	gi|408404770|ref|YP_006862753.1|	-	2e-08	33.5	1.8	2.2e-05	23.5	0.5	2.2	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
FAD_binding_3	PF01494.14	gi|408404770|ref|YP_006862753.1|	-	5e-08	32.3	0.1	7.3e-08	31.8	0.0	1.2	1	0	0	1	1	1	1	FAD	binding	domain
NAD_binding_8	PF13450.1	gi|408404770|ref|YP_006862753.1|	-	5.2e-08	32.8	0.2	1e-07	31.8	0.1	1.5	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox_2	PF07992.9	gi|408404770|ref|YP_006862753.1|	-	4e-07	30.1	0.2	8.3e-07	29.0	0.2	1.5	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.9	gi|408404770|ref|YP_006862753.1|	-	3.6e-06	25.7	0.3	5.1e-06	25.2	0.2	1.2	1	0	0	1	1	1	1	HI0933-like	protein
Lycopene_cycl	PF05834.7	gi|408404770|ref|YP_006862753.1|	-	1.6e-05	24.0	0.4	0.00011	21.3	0.2	1.9	1	1	0	1	1	1	1	Lycopene	cyclase	protein
Pyr_redox_3	PF13738.1	gi|408404770|ref|YP_006862753.1|	-	2e-05	24.7	0.3	3.1e-05	24.1	0.2	1.4	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.17	gi|408404770|ref|YP_006862753.1|	-	0.00013	20.9	0.7	0.00021	20.2	0.5	1.3	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
Trp_halogenase	PF04820.9	gi|408404770|ref|YP_006862753.1|	-	0.0018	16.9	0.5	0.61	8.6	0.0	2.1	2	0	0	2	2	2	2	Tryptophan	halogenase
ThiF	PF00899.16	gi|408404770|ref|YP_006862753.1|	-	0.0063	16.3	0.1	0.022	14.5	0.0	1.9	2	1	1	3	3	2	1	ThiF	family
Amino_oxidase	PF01593.19	gi|408404770|ref|YP_006862753.1|	-	0.046	12.7	0.0	0.068	12.2	0.0	1.2	1	0	0	1	1	1	0	Flavin	containing	amine	oxidoreductase
NAD_binding_9	PF13454.1	gi|408404770|ref|YP_006862753.1|	-	0.058	13.1	0.3	0.11	12.2	0.2	1.4	1	0	0	1	1	1	0	FAD-NAD(P)-binding
Pyr_redox	PF00070.22	gi|408404770|ref|YP_006862753.1|	-	0.074	13.4	0.3	0.26	11.7	0.2	2.0	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
Shikimate_DH	PF01488.15	gi|408404770|ref|YP_006862753.1|	-	0.11	12.5	0.0	0.33	11.0	0.0	1.7	2	0	0	2	2	2	0	Shikimate	/	quinate	5-dehydrogenase
Ferritin	PF00210.19	gi|408404774|ref|YP_006862757.1|	-	3.1e-18	65.8	2.2	3.8e-18	65.6	1.5	1.0	1	0	0	1	1	1	1	Ferritin-like	domain
Rubrerythrin	PF02915.12	gi|408404774|ref|YP_006862757.1|	-	1.3e-08	35.2	2.8	1.6e-08	34.9	1.9	1.1	1	0	0	1	1	1	1	Rubrerythrin
Ferritin_2	PF13668.1	gi|408404774|ref|YP_006862757.1|	-	1.8e-05	24.6	0.3	2.2e-05	24.4	0.2	1.1	1	0	0	1	1	1	1	Ferritin-like	domain
DUF2383	PF09537.5	gi|408404774|ref|YP_006862757.1|	-	0.055	13.7	0.3	0.16	12.2	0.0	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF2383)
NTase_sub_bind	PF08780.6	gi|408404774|ref|YP_006862757.1|	-	0.081	12.6	0.1	0.13	12.0	0.1	1.5	1	1	0	1	1	1	0	Nucleotidyltransferase	substrate	binding	protein	like
RNA_POL_M_15KD	PF02150.11	gi|408404775|ref|YP_006862758.1|	-	0.00015	21.4	0.2	0.064	12.9	0.0	2.1	2	0	0	2	2	2	2	RNA	polymerases	M/15	Kd	subunit
GFA	PF04828.9	gi|408404775|ref|YP_006862758.1|	-	0.00047	20.0	1.0	0.003	17.4	0.7	1.8	1	1	0	1	1	1	1	Glutathione-dependent	formaldehyde-activating	enzyme
DZR	PF12773.2	gi|408404775|ref|YP_006862758.1|	-	0.017	14.9	1.4	2.8	7.8	0.1	2.0	1	1	1	2	2	2	0	Double	zinc	ribbon
Cript	PF10235.4	gi|408404775|ref|YP_006862758.1|	-	0.018	15.3	0.9	0.019	15.2	0.6	1.1	1	0	0	1	1	1	0	Microtubule-associated	protein	CRIPT
PAAR_motif	PF05488.8	gi|408404775|ref|YP_006862758.1|	-	0.025	14.5	0.1	0.031	14.2	0.1	1.1	1	0	0	1	1	1	0	PAAR	motif
DUF2321	PF10083.4	gi|408404775|ref|YP_006862758.1|	-	0.027	13.9	0.6	0.06	12.8	0.4	1.6	1	1	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2321)
Nudix_N_2	PF14803.1	gi|408404775|ref|YP_006862758.1|	-	0.031	13.9	0.7	0.63	9.7	0.0	2.1	2	0	0	2	2	2	0	Nudix	N-terminal
C1_1	PF00130.17	gi|408404775|ref|YP_006862758.1|	-	0.034	13.8	2.3	3.9	7.2	0.1	2.1	1	1	1	2	2	2	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
DM	PF00751.13	gi|408404775|ref|YP_006862758.1|	-	0.053	13.0	0.6	6	6.4	0.0	2.1	2	0	0	2	2	2	0	DM	DNA	binding	domain
Med27	PF11571.3	gi|408404775|ref|YP_006862758.1|	-	0.068	13.3	0.9	2.4	8.3	0.0	2.0	1	1	1	2	2	2	0	Mediator	complex	subunit	27
HypA	PF01155.14	gi|408404775|ref|YP_006862758.1|	-	0.079	12.6	0.2	0.08	12.6	0.1	1.1	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
Cys_rich_KTR	PF14205.1	gi|408404775|ref|YP_006862758.1|	-	0.083	12.3	2.5	0.31	10.5	0.2	2.1	1	1	1	2	2	2	0	Cysteine-rich	KTR
zf-C2HC5	PF06221.8	gi|408404775|ref|YP_006862758.1|	-	0.088	12.5	0.5	4.4	7.1	0.0	2.1	1	1	1	2	2	2	0	Putative	zinc	finger	motif,	C2HC5-type
DNA_RNApol_7kD	PF03604.8	gi|408404775|ref|YP_006862758.1|	-	0.097	12.1	0.8	1.7	8.1	0.0	2.2	2	0	0	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
zf-NADH-PPase	PF09297.6	gi|408404775|ref|YP_006862758.1|	-	0.18	11.3	1.9	0.18	11.3	0.2	1.8	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
zf-ribbon_3	PF13248.1	gi|408404775|ref|YP_006862758.1|	-	0.22	10.7	1.1	4.2	6.7	0.1	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
Rpr2	PF04032.11	gi|408404775|ref|YP_006862758.1|	-	0.47	10.3	2.6	3.3	7.6	0.0	2.0	1	1	1	2	2	2	0	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
zinc_ribbon_2	PF13240.1	gi|408404775|ref|YP_006862758.1|	-	0.56	9.7	5.8	4.7	6.8	4.0	2.1	1	1	0	1	1	1	0	zinc-ribbon	domain
Pyr_redox_2	PF07992.9	gi|408404777|ref|YP_006862760.1|	-	6.6e-32	111.0	4.3	9.7e-31	107.2	3.0	3.1	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.22	gi|408404777|ref|YP_006862760.1|	-	9.7e-19	67.5	1.8	2.5e-18	66.2	0.2	2.2	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.1	gi|408404777|ref|YP_006862760.1|	-	4.8e-17	62.6	0.2	3.6e-13	50.0	0.0	3.0	2	1	1	3	3	3	1	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.19	gi|408404777|ref|YP_006862760.1|	-	6.4e-09	35.1	2.3	0.00013	21.0	0.0	3.5	3	1	1	4	4	4	2	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.19	gi|408404777|ref|YP_006862760.1|	-	3.8e-07	29.3	6.1	0.0014	17.5	0.1	4.8	2	2	4	6	6	6	1	FAD	binding	domain
FAD_binding_3	PF01494.14	gi|408404777|ref|YP_006862760.1|	-	2.6e-06	26.7	0.9	0.065	12.2	0.1	3.1	2	1	1	3	3	3	2	FAD	binding	domain
K_oxygenase	PF13434.1	gi|408404777|ref|YP_006862760.1|	-	9.4e-06	24.7	0.2	0.0035	16.2	0.0	2.7	2	1	1	3	3	3	2	L-lysine	6-monooxygenase	(NADPH-requiring)
Thi4	PF01946.12	gi|408404777|ref|YP_006862760.1|	-	3.9e-05	22.8	0.8	0.021	13.9	0.0	2.7	2	1	0	2	2	2	2	Thi4	family
NAD_binding_7	PF13241.1	gi|408404777|ref|YP_006862760.1|	-	6.8e-05	23.0	0.6	0.0034	17.6	0.3	2.5	2	1	0	2	2	2	1	Putative	NAD(P)-binding
GIDA	PF01134.17	gi|408404777|ref|YP_006862760.1|	-	7e-05	21.8	2.2	0.11	11.2	0.1	3.9	3	1	0	4	4	4	1	Glucose	inhibited	division	protein	A
NAD_binding_8	PF13450.1	gi|408404777|ref|YP_006862760.1|	-	0.00059	19.8	0.5	0.36	10.8	0.0	2.9	3	0	0	3	3	3	1	NAD(P)-binding	Rossmann-like	domain
FAD_oxidored	PF12831.2	gi|408404777|ref|YP_006862760.1|	-	0.00098	18.2	1.6	0.0076	15.3	0.0	2.5	2	1	1	3	3	3	1	FAD	dependent	oxidoreductase
HI0933_like	PF03486.9	gi|408404777|ref|YP_006862760.1|	-	0.0036	15.8	0.2	0.87	7.9	0.0	3.1	3	0	0	3	3	3	1	HI0933-like	protein
Lycopene_cycl	PF05834.7	gi|408404777|ref|YP_006862760.1|	-	0.0066	15.4	0.6	6	5.6	0.0	3.3	3	1	1	4	4	4	1	Lycopene	cyclase	protein
Shikimate_DH	PF01488.15	gi|408404777|ref|YP_006862760.1|	-	0.038	14.1	0.1	0.88	9.6	0.0	2.4	2	0	0	2	2	2	0	Shikimate	/	quinate	5-dehydrogenase
NAD_binding_9	PF13454.1	gi|408404777|ref|YP_006862760.1|	-	0.11	12.3	1.4	1.9	8.2	0.0	3.1	3	0	0	3	3	3	0	FAD-NAD(P)-binding
Yip1	PF04893.12	gi|408404778|ref|YP_006862761.1|	-	0.013	14.9	2.5	0.014	14.8	1.8	1.1	1	0	0	1	1	1	0	Yip1	domain
SNARE_assoc	PF09335.6	gi|408404778|ref|YP_006862761.1|	-	0.072	13.2	6.0	0.19	11.9	4.1	1.6	1	1	0	1	1	1	0	SNARE	associated	Golgi	protein
TMEM138	PF14935.1	gi|408404778|ref|YP_006862761.1|	-	0.21	11.8	3.1	3.6	7.9	0.0	2.1	2	0	0	2	2	2	0	Transmembrane	protein	138
PALP	PF00291.20	gi|408404779|ref|YP_006862762.1|	-	1.2e-56	192.2	0.0	1.4e-56	191.9	0.0	1.1	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
Methyltransf_25	PF13649.1	gi|408404779|ref|YP_006862762.1|	-	0.14	12.4	0.0	0.37	11.1	0.0	1.7	1	0	0	1	1	1	0	Methyltransferase	domain
TusA	PF01206.12	gi|408404780|ref|YP_006862763.1|	-	1.1e-24	85.7	0.0	1.3e-24	85.6	0.0	1.0	1	0	0	1	1	1	1	Sulfurtransferase	TusA
DUF2249	PF10006.4	gi|408404780|ref|YP_006862763.1|	-	0.013	15.0	0.0	0.019	14.5	0.0	1.2	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2249)
MEDS	PF14417.1	gi|408404782|ref|YP_006862765.1|	-	5.3e-07	28.8	0.7	6.5e-07	28.6	0.5	1.1	1	0	0	1	1	1	1	MEDS:	MEthanogen/methylotroph,	DcmR	Sensory	domain
Response_reg	PF00072.19	gi|408404782|ref|YP_006862765.1|	-	0.01	15.8	0.0	0.021	14.8	0.0	1.6	1	0	0	1	1	1	0	Response	regulator	receiver	domain
KaiC	PF06745.8	gi|408404782|ref|YP_006862765.1|	-	0.061	12.4	0.0	0.11	11.6	0.0	1.3	1	0	0	1	1	1	0	KaiC
MEDS	PF14417.1	gi|408404784|ref|YP_006862767.1|	-	0.0063	15.5	0.2	0.0082	15.2	0.0	1.3	2	0	0	2	2	2	1	MEDS:	MEthanogen/methylotroph,	DcmR	Sensory	domain
F420_ligase	PF01996.11	gi|408404785|ref|YP_006862768.1|	-	1.9e-70	236.5	2.6	2.1e-70	236.3	1.8	1.0	1	0	0	1	1	1	1	F420-0:Gamma-glutamyl	ligase
Abhydrolase_3	PF07859.8	gi|408404786|ref|YP_006862769.1|	-	9.5e-14	51.4	0.0	9.6e-14	51.4	0.0	1.0	1	0	0	1	1	1	1	alpha/beta	hydrolase	fold
HAD	PF12710.2	gi|408404787|ref|YP_006862770.1|	-	2.6e-10	40.8	0.1	3.4e-10	40.4	0.0	1.2	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.21	gi|408404787|ref|YP_006862770.1|	-	2.9e-10	40.9	0.3	1.3e-09	38.7	0.2	1.9	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HAD_2	PF13419.1	gi|408404787|ref|YP_006862770.1|	-	7.2e-07	29.5	0.0	1.3e-06	28.7	0.0	1.5	1	1	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase_3	PF08282.7	gi|408404787|ref|YP_006862770.1|	-	4.7e-05	23.0	0.1	7.1e-05	22.4	0.0	1.5	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
S6PP	PF05116.8	gi|408404787|ref|YP_006862770.1|	-	0.0007	18.9	0.0	0.001	18.4	0.0	1.2	1	0	0	1	1	1	1	Sucrose-6F-phosphate	phosphohydrolase
Hydrolase_6	PF13344.1	gi|408404787|ref|YP_006862770.1|	-	0.092	12.6	0.0	0.67	9.8	0.0	2.4	1	1	0	1	1	1	0	Haloacid	dehalogenase-like	hydrolase
VWA_2	PF13519.1	gi|408404788|ref|YP_006862771.1|	-	1.4e-11	44.8	0.0	6.7e-11	42.5	0.0	2.2	2	1	0	2	2	2	1	von	Willebrand	factor	type	A	domain
VWA_3	PF13768.1	gi|408404788|ref|YP_006862771.1|	-	0.0038	16.9	0.5	0.13	11.9	0.0	3.1	3	1	0	3	3	3	1	von	Willebrand	factor	type	A	domain
VWA	PF00092.23	gi|408404788|ref|YP_006862771.1|	-	0.087	12.5	0.0	0.23	11.1	0.0	1.8	1	1	0	1	1	1	0	von	Willebrand	factor	type	A	domain
AAA_5	PF07728.9	gi|408404789|ref|YP_006862772.1|	-	1.2e-09	38.0	0.0	1.3e-05	24.9	0.0	2.4	2	0	0	2	2	2	2	AAA	domain	(dynein-related	subfamily)
Sigma54_activat	PF00158.21	gi|408404789|ref|YP_006862772.1|	-	2.7e-09	36.7	0.0	4.6e-07	29.4	0.0	2.3	2	0	0	2	2	2	2	Sigma-54	interaction	domain
AAA_3	PF07726.6	gi|408404789|ref|YP_006862772.1|	-	3.5e-07	29.8	0.0	8.8e-05	22.1	0.0	3.4	4	0	0	4	4	4	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_PrkA	PF08298.6	gi|408404789|ref|YP_006862772.1|	-	5e-06	25.4	0.1	2.7e-05	23.0	0.0	1.9	1	1	0	1	1	1	1	PrkA	AAA	domain
Mg_chelatase	PF01078.16	gi|408404789|ref|YP_006862772.1|	-	3.8e-05	22.9	0.0	0.41	9.7	0.0	2.9	3	1	0	3	3	3	2	Magnesium	chelatase,	subunit	ChlI
MCM	PF00493.18	gi|408404789|ref|YP_006862772.1|	-	0.00033	19.5	0.0	0.0021	16.9	0.0	2.1	2	0	0	2	2	2	1	MCM2/3/5	family
AAA	PF00004.24	gi|408404789|ref|YP_006862772.1|	-	0.0069	16.5	0.0	1.9	8.6	0.0	3.3	3	0	0	3	3	3	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Ribosomal_S13	PF00416.17	gi|408404791|ref|YP_006862774.1|	-	1.1e-29	103.0	0.1	1.4e-29	102.6	0.1	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S13/S18
S4	PF01479.20	gi|408404792|ref|YP_006862775.1|	-	1.1e-12	47.2	3.0	8.2e-11	41.1	0.0	2.6	3	0	0	3	3	3	2	S4	domain
Ribosomal_S4	PF00163.14	gi|408404792|ref|YP_006862775.1|	-	0.02	15.2	0.9	0.26	11.6	0.1	2.2	1	1	1	2	2	2	0	Ribosomal	protein	S4/S9	N-terminal	domain
S_layer_C	PF05124.7	gi|408404793|ref|YP_006862776.1|	-	2.4e-10	40.4	0.1	4e-10	39.7	0.0	1.3	1	0	0	1	1	1	1	S-layer	like	family,	C-terminal	region
HTH_20	PF12840.2	gi|408404793|ref|YP_006862776.1|	-	3.3e-07	29.9	0.0	5.7e-07	29.2	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
TrmB	PF01978.14	gi|408404793|ref|YP_006862776.1|	-	1.8e-05	24.3	0.2	3.9e-05	23.2	0.1	1.6	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_5	PF01022.15	gi|408404793|ref|YP_006862776.1|	-	0.032	13.9	0.0	0.053	13.1	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
EF-hand_5	PF13202.1	gi|408404793|ref|YP_006862776.1|	-	0.068	12.5	0.4	0.16	11.4	0.3	1.6	1	0	0	1	1	1	0	EF	hand
DUF2250	PF10007.4	gi|408404793|ref|YP_006862776.1|	-	0.087	12.7	0.0	0.16	11.9	0.0	1.4	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
BcsB	PF03170.8	gi|408404793|ref|YP_006862776.1|	-	0.2	9.6	0.0	1.3	6.9	0.0	1.9	1	1	1	2	2	2	0	Bacterial	cellulose	synthase	subunit
SIS	PF01380.17	gi|408404794|ref|YP_006862777.1|	-	1.9e-50	169.8	3.6	6.2e-28	97.0	1.4	2.5	2	0	0	2	2	2	2	SIS	domain
GATase_6	PF13522.1	gi|408404794|ref|YP_006862777.1|	-	8.5e-24	84.0	0.2	5.4e-23	81.4	0.0	2.2	2	0	0	2	2	2	1	Glutamine	amidotransferase	domain
GATase_2	PF00310.16	gi|408404794|ref|YP_006862777.1|	-	1.4e-21	76.6	0.3	1.7e-17	63.1	0.1	2.8	1	1	1	2	2	2	2	Glutamine	amidotransferases	class-II
GATase_7	PF13537.1	gi|408404794|ref|YP_006862777.1|	-	5.9e-18	64.8	0.0	2.8e-17	62.6	0.0	2.2	2	0	0	2	2	2	1	Glutamine	amidotransferase	domain
GATase_4	PF13230.1	gi|408404794|ref|YP_006862777.1|	-	1.8e-06	26.8	0.1	2.9e-06	26.1	0.0	1.4	1	0	0	1	1	1	1	Glutamine	amidotransferases	class-II
SIS_2	PF13580.1	gi|408404794|ref|YP_006862777.1|	-	0.00022	20.9	10.3	0.0021	17.7	0.3	3.6	3	1	1	4	4	4	2	SIS	domain
SET	PF00856.23	gi|408404795|ref|YP_006862778.1|	-	0.0021	18.4	3.7	0.87	9.8	2.5	2.1	1	1	0	1	1	1	1	SET	domain
Snf7	PF03357.16	gi|408404797|ref|YP_006862780.1|	-	4.8e-07	29.3	0.7	6.9e-07	28.8	0.5	1.2	1	0	0	1	1	1	1	Snf7
LOH1CR12	PF10158.4	gi|408404797|ref|YP_006862780.1|	-	0.016	14.9	0.5	0.026	14.3	0.3	1.3	1	0	0	1	1	1	0	Tumour	suppressor	protein
DUF922	PF06037.6	gi|408404797|ref|YP_006862780.1|	-	0.02	14.2	0.1	0.032	13.5	0.0	1.5	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF922)
CK2S	PF15011.1	gi|408404797|ref|YP_006862780.1|	-	0.076	12.8	2.0	0.18	11.5	1.3	1.7	1	1	1	2	2	2	0	Casein	Kinase	2	substrate
IFT57	PF10498.4	gi|408404797|ref|YP_006862780.1|	-	0.091	11.4	7.0	0.12	11.0	4.8	1.1	1	0	0	1	1	1	0	Intra-flagellar	transport	protein	57
Nup54	PF13874.1	gi|408404797|ref|YP_006862780.1|	-	0.18	11.4	6.7	0.28	10.8	4.6	1.3	1	0	0	1	1	1	0	Nucleoporin	complex	subunit	54
Nuc_rec_co-act	PF08815.5	gi|408404797|ref|YP_006862780.1|	-	1.8	8.1	4.9	2.7	7.5	0.0	3.2	4	0	0	4	4	4	0	Nuclear	receptor	coactivator
FliJ	PF02050.11	gi|408404797|ref|YP_006862780.1|	-	1.9	8.5	12.0	6.2	6.8	5.4	2.5	2	1	1	3	3	3	0	Flagellar	FliJ	protein
Matrilin_ccoil	PF10393.4	gi|408404797|ref|YP_006862780.1|	-	2.7	7.4	9.1	0.27	10.6	1.3	2.4	2	0	0	2	2	2	0	Trimeric	coiled-coil	oligomerisation	domain	of	matrilin
UPF0104	PF03706.8	gi|408404799|ref|YP_006862782.1|	-	3.3e-22	79.1	22.2	4.6e-22	78.6	15.4	1.1	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0104)
Reticulon	PF02453.12	gi|408404799|ref|YP_006862782.1|	-	0.36	10.4	6.1	0.049	13.2	0.9	1.9	2	0	0	2	2	2	0	Reticulon
ATP_bind_1	PF03029.12	gi|408404800|ref|YP_006862783.1|	-	5.9e-52	176.5	0.0	7.3e-52	176.2	0.0	1.0	1	0	0	1	1	1	1	Conserved	hypothetical	ATP	binding	protein
AAA_16	PF13191.1	gi|408404800|ref|YP_006862783.1|	-	8.5e-05	22.6	0.0	0.00017	21.6	0.0	1.4	1	0	0	1	1	1	1	AAA	ATPase	domain
CbiA	PF01656.18	gi|408404800|ref|YP_006862783.1|	-	0.00067	19.1	0.0	0.0011	18.3	0.0	1.5	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_22	PF13401.1	gi|408404800|ref|YP_006862783.1|	-	0.0013	18.8	0.0	0.0028	17.8	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
AAA_10	PF12846.2	gi|408404800|ref|YP_006862783.1|	-	0.0018	17.7	0.0	0.0035	16.8	0.0	1.4	1	0	0	1	1	1	1	AAA-like	domain
AAA_18	PF13238.1	gi|408404800|ref|YP_006862783.1|	-	0.0083	16.4	0.3	0.025	14.8	0.1	2.0	2	1	0	2	2	1	1	AAA	domain
MMR_HSR1	PF01926.18	gi|408404800|ref|YP_006862783.1|	-	0.0097	15.8	0.0	0.045	13.6	0.0	2.0	1	1	1	2	2	2	1	50S	ribosome-binding	GTPase
DUF2075	PF09848.4	gi|408404800|ref|YP_006862783.1|	-	0.01	14.8	0.0	0.015	14.2	0.0	1.2	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
cobW	PF02492.14	gi|408404800|ref|YP_006862783.1|	-	0.012	15.0	0.4	1	8.7	0.0	2.6	2	1	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_17	PF13207.1	gi|408404800|ref|YP_006862783.1|	-	0.016	15.9	0.0	0.031	15.1	0.0	1.8	1	1	0	1	1	1	0	AAA	domain
TrwB_AAD_bind	PF10412.4	gi|408404800|ref|YP_006862783.1|	-	0.044	12.4	0.0	0.065	11.8	0.0	1.3	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
KaiC	PF06745.8	gi|408404800|ref|YP_006862783.1|	-	0.047	12.7	0.0	1.8	7.6	0.0	2.1	2	0	0	2	2	2	0	KaiC
AAA_25	PF13481.1	gi|408404800|ref|YP_006862783.1|	-	0.06	12.7	1.1	4.3	6.6	0.1	2.3	2	0	0	2	2	2	0	AAA	domain
GTP_EFTU	PF00009.22	gi|408404800|ref|YP_006862783.1|	-	0.063	12.7	0.1	3.6	6.9	0.1	2.7	2	1	0	2	2	2	0	Elongation	factor	Tu	GTP	binding	domain
AAA_14	PF13173.1	gi|408404800|ref|YP_006862783.1|	-	0.068	13.0	0.0	0.13	12.1	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
ArgK	PF03308.11	gi|408404800|ref|YP_006862783.1|	-	0.073	11.8	0.0	0.2	10.3	0.0	1.7	2	0	0	2	2	2	0	ArgK	protein
SRP54	PF00448.17	gi|408404800|ref|YP_006862783.1|	-	0.078	12.4	0.0	8.2	5.8	0.0	2.3	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
AAA_24	PF13479.1	gi|408404800|ref|YP_006862783.1|	-	0.086	12.4	0.0	0.14	11.6	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
LigB	PF02900.13	gi|408404800|ref|YP_006862783.1|	-	0.11	11.4	0.0	0.16	10.9	0.0	1.2	1	0	0	1	1	1	0	Catalytic	LigB	subunit	of	aromatic	ring-opening	dioxygenase
NACHT	PF05729.7	gi|408404800|ref|YP_006862783.1|	-	0.15	11.7	0.0	0.27	10.8	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
HSBP1	PF06825.7	gi|408404800|ref|YP_006862783.1|	-	0.19	11.3	0.8	0.43	10.1	0.6	1.5	1	0	0	1	1	1	0	Heat	shock	factor	binding	protein	1
GHMP_kinases_N	PF00288.21	gi|408404801|ref|YP_006862784.1|	-	2.9e-15	56.0	1.8	2.9e-15	56.0	1.3	2.1	2	0	0	2	2	2	1	GHMP	kinases	N	terminal	domain
GHMP_kinases_C	PF08544.8	gi|408404801|ref|YP_006862784.1|	-	6.1e-07	29.5	0.1	1.4e-06	28.4	0.0	1.6	1	0	0	1	1	1	1	GHMP	kinases	C	terminal
ECH	PF00378.15	gi|408404802|ref|YP_006862785.1|	-	3.6e-71	239.1	1.2	4.2e-71	238.9	0.8	1.0	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase	family
Peptidase_S49	PF01343.13	gi|408404802|ref|YP_006862785.1|	-	0.00035	20.3	0.0	0.011	15.4	0.0	2.3	2	0	0	2	2	2	1	Peptidase	family	S49
ECH_C	PF13766.1	gi|408404802|ref|YP_006862785.1|	-	0.0033	17.5	0.2	0.0087	16.1	0.1	1.7	2	0	0	2	2	2	1	2-enoyl-CoA	Hydratase	C-terminal	region
Arginase	PF00491.16	gi|408404803|ref|YP_006862786.1|	-	4e-58	196.8	0.0	4.6e-58	196.7	0.0	1.0	1	0	0	1	1	1	1	Arginase	family
Response_reg	PF00072.19	gi|408404804|ref|YP_006862787.1|	-	2.5e-09	37.1	0.4	2.9e-09	36.9	0.2	1.0	1	0	0	1	1	1	1	Response	regulator	receiver	domain
B12-binding	PF02310.14	gi|408404804|ref|YP_006862787.1|	-	0.13	12.1	0.0	0.19	11.6	0.0	1.2	1	0	0	1	1	1	0	B12	binding	domain
HATPase_c	PF02518.21	gi|408404805|ref|YP_006862788.1|	-	3.4e-26	91.1	0.1	7.1e-26	90.1	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.20	gi|408404805|ref|YP_006862788.1|	-	2.1e-13	50.0	2.1	2.7e-13	49.6	0.5	2.0	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_5	PF14501.1	gi|408404805|ref|YP_006862788.1|	-	4.7e-05	23.0	0.0	0.00012	21.7	0.0	1.6	1	0	0	1	1	1	1	GHKL	domain
HATPase_c_3	PF13589.1	gi|408404805|ref|YP_006862788.1|	-	0.0015	18.2	0.1	0.004	16.8	0.0	1.7	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.1	gi|408404805|ref|YP_006862788.1|	-	0.011	15.5	0.0	0.023	14.4	0.0	1.6	1	0	0	1	1	1	0	Histidine	kinase-like	ATPase	domain
HALZ	PF02183.13	gi|408404805|ref|YP_006862788.1|	-	0.062	13.0	0.5	0.16	11.7	0.3	1.7	1	0	0	1	1	1	0	Homeobox	associated	leucine	zipper
FtsL	PF04999.8	gi|408404805|ref|YP_006862788.1|	-	0.18	11.5	2.9	0.35	10.6	0.5	2.2	2	0	0	2	2	2	0	Cell	division	protein	FtsL
GvpG	PF05120.7	gi|408404806|ref|YP_006862789.1|	-	1.6e-06	27.8	0.7	1.9e-06	27.5	0.5	1.1	1	0	0	1	1	1	1	Gas	vesicle	protein	G
ICAT	PF06384.6	gi|408404806|ref|YP_006862789.1|	-	0.014	15.1	0.1	0.021	14.6	0.0	1.3	1	0	0	1	1	1	0	Beta-catenin-interacting	protein	ICAT
Spore_YpjB	PF09577.5	gi|408404806|ref|YP_006862789.1|	-	0.017	14.7	0.1	0.02	14.4	0.1	1.1	1	0	0	1	1	1	0	Sporulation	protein	YpjB	(SpoYpjB)
Nup54	PF13874.1	gi|408404806|ref|YP_006862789.1|	-	0.04	13.5	0.6	0.046	13.3	0.4	1.1	1	0	0	1	1	1	0	Nucleoporin	complex	subunit	54
MCRS_N	PF13325.1	gi|408404806|ref|YP_006862789.1|	-	0.043	13.3	0.5	0.046	13.2	0.3	1.0	1	0	0	1	1	1	0	N-terminal	region	of	micro-spherule	protein
Prok-TraM	PF09228.5	gi|408404806|ref|YP_006862789.1|	-	0.083	13.0	1.0	0.12	12.5	0.7	1.3	1	1	0	1	1	1	0	Prokaryotic	Transcriptional	repressor	TraM
GvpL_GvpF	PF06386.6	gi|408404807|ref|YP_006862790.1|	-	4e-57	193.6	0.0	4.4e-57	193.5	0.0	1.0	1	0	0	1	1	1	1	Gas	vesicle	synthesis	protein	GvpL/GvpF
TBPIP	PF07106.8	gi|408404807|ref|YP_006862790.1|	-	2.3	7.7	11.8	5.4	6.5	0.8	2.8	2	1	1	3	3	3	0	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
Atg14	PF10186.4	gi|408404807|ref|YP_006862790.1|	-	2.9	6.7	7.3	0.75	8.6	2.7	1.6	1	1	0	2	2	2	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
GvpK	PF05121.7	gi|408404808|ref|YP_006862791.1|	-	1.3e-20	72.9	0.7	1.3e-20	72.9	0.5	1.6	2	0	0	2	2	2	1	Gas	vesicle	protein	K
Gas_vesicle	PF00741.13	gi|408404808|ref|YP_006862791.1|	-	5.7e-08	32.4	7.3	1.1e-07	31.5	5.1	1.5	1	0	0	1	1	1	1	Gas	vesicle	protein
DnaB_C	PF03796.10	gi|408404808|ref|YP_006862791.1|	-	0.024	13.5	0.3	0.031	13.1	0.2	1.1	1	0	0	1	1	1	0	DnaB-like	helicase	C	terminal	domain
ACP_syn_III_C	PF08541.5	gi|408404808|ref|YP_006862791.1|	-	0.031	14.2	0.0	0.049	13.6	0.0	1.3	1	0	0	1	1	1	0	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III	C	terminal
Gas_vesicle	PF00741.13	gi|408404809|ref|YP_006862792.1|	-	5.3e-17	61.4	4.6	7e-17	61.0	3.2	1.2	1	0	0	1	1	1	1	Gas	vesicle	protein
DUF866	PF05907.8	gi|408404810|ref|YP_006862793.1|	-	0.071	12.5	0.0	0.092	12.2	0.0	1.1	1	0	0	1	1	1	0	Eukaryotic	protein	of	unknown	function	(DUF866)
Cas_CXXC_CXXC	PF09706.5	gi|408404810|ref|YP_006862793.1|	-	0.18	11.9	1.2	6.6	6.9	0.0	2.5	3	0	0	3	3	3	0	CRISPR-associated	protein	(Cas_CXXC_CXXC)
zf-ribbon_3	PF13248.1	gi|408404810|ref|YP_006862793.1|	-	0.62	9.3	6.7	1.3	8.3	0.4	3.2	3	1	0	3	3	3	0	zinc-ribbon	domain
zf-DNL	PF05180.7	gi|408404810|ref|YP_006862793.1|	-	3.2	7.5	4.7	0.49	10.1	0.5	1.7	2	0	0	2	2	2	0	DNL	zinc	finger
DUF35_N	PF12172.3	gi|408404810|ref|YP_006862793.1|	-	9.8	6.2	7.0	0.93	9.4	0.1	2.6	3	1	0	3	3	3	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
Gas_vesicle	PF00741.13	gi|408404811|ref|YP_006862794.1|	-	5.6e-14	51.7	8.8	7.5e-14	51.3	6.1	1.2	1	0	0	1	1	1	1	Gas	vesicle	protein
CbiA	PF01656.18	gi|408404812|ref|YP_006862795.1|	-	1.2e-22	80.2	0.2	1.5e-22	79.9	0.1	1.1	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.1	gi|408404812|ref|YP_006862795.1|	-	9.6e-10	38.6	0.0	1.8e-09	37.7	0.0	1.4	1	1	0	1	1	1	1	AAA	domain
MipZ	PF09140.6	gi|408404812|ref|YP_006862795.1|	-	7.1e-07	28.5	0.1	6.5e-06	25.4	0.1	2.0	1	1	0	1	1	1	1	ATPase	MipZ
YhjQ	PF06564.7	gi|408404812|ref|YP_006862795.1|	-	0.00057	19.3	0.1	0.002	17.5	0.1	1.8	1	1	0	1	1	1	1	YhjQ	protein
ArsA_ATPase	PF02374.10	gi|408404812|ref|YP_006862795.1|	-	0.00081	18.5	0.1	0.0016	17.5	0.0	1.4	1	1	0	1	1	1	1	Anion-transporting	ATPase
AAA_25	PF13481.1	gi|408404812|ref|YP_006862795.1|	-	0.0009	18.6	0.2	0.0024	17.3	0.0	1.8	2	1	0	2	2	2	1	AAA	domain
VirC1	PF07015.6	gi|408404812|ref|YP_006862795.1|	-	0.0018	17.4	0.1	0.0051	15.9	0.0	1.8	2	0	0	2	2	2	1	VirC1	protein
ArgK	PF03308.11	gi|408404812|ref|YP_006862795.1|	-	0.0066	15.2	0.0	0.04	12.7	0.1	1.9	2	0	0	2	2	2	1	ArgK	protein
Fer4_NifH	PF00142.13	gi|408404812|ref|YP_006862795.1|	-	0.021	14.0	0.0	0.053	12.6	0.0	1.6	2	0	0	2	2	2	0	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
AAA_19	PF13245.1	gi|408404812|ref|YP_006862795.1|	-	0.088	12.5	0.0	3.1	7.6	0.1	2.5	2	0	0	2	2	2	0	Part	of	AAA	domain
ParA	PF10609.4	gi|408404812|ref|YP_006862795.1|	-	0.095	12.5	0.1	2.7	7.9	0.1	2.5	3	0	0	3	3	3	0	ParA/MinD	ATPase	like
SRP54	PF00448.17	gi|408404812|ref|YP_006862795.1|	-	0.13	11.6	0.2	2.3	7.6	0.0	2.3	2	1	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
Apc4_WD40	PF12894.2	gi|408404812|ref|YP_006862795.1|	-	0.14	11.7	0.0	0.29	10.6	0.0	1.6	1	0	0	1	1	1	0	Anaphase-promoting	complex	subunit	4	WD40	domain
HATPase_c	PF02518.21	gi|408404813|ref|YP_006862796.1|	-	2.3e-23	82.0	0.2	4.2e-23	81.1	0.2	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.20	gi|408404813|ref|YP_006862796.1|	-	1.8e-12	47.0	0.5	1.8e-12	47.0	0.3	3.4	2	1	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_5	PF14501.1	gi|408404813|ref|YP_006862796.1|	-	0.0002	20.9	0.0	0.00076	19.1	0.0	1.9	2	0	0	2	2	2	1	GHKL	domain
Regulator_TrmB	PF11495.3	gi|408404813|ref|YP_006862796.1|	-	0.00027	20.0	0.3	0.0013	17.7	0.0	2.2	2	0	0	2	2	2	1	Archaeal	transcriptional	regulator	TrmB
ApoLp-III	PF07464.6	gi|408404813|ref|YP_006862796.1|	-	0.00083	19.4	1.9	0.00083	19.4	1.3	1.9	2	0	0	2	2	2	1	Apolipophorin-III	precursor	(apoLp-III)
HATPase_c_2	PF13581.1	gi|408404813|ref|YP_006862796.1|	-	0.0055	16.4	0.0	0.017	14.9	0.0	1.8	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
OmpH	PF03938.9	gi|408404813|ref|YP_006862796.1|	-	0.049	13.5	0.3	0.049	13.5	0.2	2.3	2	1	0	2	2	2	0	Outer	membrane	protein	(OmpH-like)
PLDc_2	PF13091.1	gi|408404813|ref|YP_006862796.1|	-	0.054	13.2	0.0	0.14	11.9	0.0	1.7	1	0	0	1	1	1	0	PLD-like	domain
Phage_Mu_Gam	PF07352.7	gi|408404813|ref|YP_006862796.1|	-	0.11	12.0	7.3	0.34	10.4	2.9	2.6	2	1	0	2	2	2	0	Bacteriophage	Mu	Gam	like	protein
BAR_2	PF10455.4	gi|408404813|ref|YP_006862796.1|	-	0.18	10.6	6.1	0.6	8.9	0.7	2.2	2	0	0	2	2	2	0	Bin/amphiphysin/Rvs	domain	for	vesicular	trafficking
DUF1803	PF08820.5	gi|408404814|ref|YP_006862797.1|	-	0.037	13.7	0.1	0.045	13.4	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1803)
HMA	PF00403.21	gi|408404816|ref|YP_006862799.1|	-	1.9e-12	47.1	0.1	2.2e-12	46.9	0.1	1.0	1	0	0	1	1	1	1	Heavy-metal-associated	domain
DUF2963	PF11178.3	gi|408404816|ref|YP_006862799.1|	-	0.017	14.4	0.3	0.022	14.1	0.2	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2963)
ChlI	PF13541.1	gi|408404816|ref|YP_006862799.1|	-	0.03	13.8	0.0	0.063	12.7	0.0	1.6	1	1	1	2	2	2	0	Subunit	ChlI	of	Mg-chelatase
E1-E2_ATPase	PF00122.15	gi|408404817|ref|YP_006862800.1|	-	9.9e-57	191.6	1.3	9.9e-57	191.6	0.9	1.8	2	0	0	2	2	2	1	E1-E2	ATPase
Hydrolase	PF00702.21	gi|408404817|ref|YP_006862800.1|	-	3.2e-55	187.8	5.8	3.2e-55	187.8	4.0	1.9	2	0	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.2	gi|408404817|ref|YP_006862800.1|	-	1.7e-19	70.7	0.0	4.5e-19	69.3	0.0	1.8	2	0	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
YHS	PF04945.8	gi|408404817|ref|YP_006862800.1|	-	1.5e-08	34.3	0.2	2.8e-08	33.4	0.1	1.4	1	0	0	1	1	1	1	YHS	domain
Hydrolase_3	PF08282.7	gi|408404817|ref|YP_006862800.1|	-	1.4e-07	31.3	1.6	0.0036	16.9	0.1	2.3	1	1	1	2	2	2	2	haloacid	dehalogenase-like	hydrolase
Hydrolase_6	PF13344.1	gi|408404817|ref|YP_006862800.1|	-	0.00025	20.9	0.0	0.001	18.9	0.0	2.1	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Fimbrial_PilY2	PF14481.1	gi|408404817|ref|YP_006862800.1|	-	0.0073	15.7	0.0	0.16	11.4	0.0	3.0	3	0	0	3	3	3	1	Type	4	fimbrial	biogenesis	protein	PilY2
DUF2116	PF09889.4	gi|408404817|ref|YP_006862800.1|	-	0.011	15.5	0.2	0.057	13.2	0.0	2.3	2	0	0	2	2	2	0	Uncharacterized	protein	containing	a	Zn-ribbon	(DUF2116)
zf-FCS	PF06467.9	gi|408404817|ref|YP_006862800.1|	-	0.083	12.5	0.4	0.15	11.7	0.3	1.4	1	0	0	1	1	1	0	MYM-type	Zinc	finger	with	FCS	sequence	motif
NAD_binding_5	PF07994.7	gi|408404818|ref|YP_006862801.1|	-	0.0057	16.1	0.0	2.8	7.3	0.0	2.3	2	1	0	2	2	2	2	Myo-inositol-1-phosphate	synthase
DUF1887	PF09002.6	gi|408404819|ref|YP_006862802.1|	-	0.007	14.8	0.0	0.01	14.2	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1887)
DUF1469	PF07332.6	gi|408404820|ref|YP_006862803.1|	-	0.054	13.2	0.0	0.061	13.0	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1469)
Pyr_redox_dim	PF02852.17	gi|408404821|ref|YP_006862804.1|	-	2.2e-10	40.5	0.2	2.3e-10	40.4	0.1	1.0	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
Pyr_redox_2	PF07992.9	gi|408404822|ref|YP_006862805.1|	-	2.4e-07	30.8	0.3	3.7e-07	30.2	0.0	1.4	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.22	gi|408404823|ref|YP_006862806.1|	-	6.7e-14	52.0	0.0	2.7e-13	50.1	0.0	1.7	1	1	1	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_2	PF07992.9	gi|408404823|ref|YP_006862806.1|	-	9.9e-06	25.5	0.0	4.5e-05	23.4	0.0	1.8	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
3HCDH_N	PF02737.13	gi|408404823|ref|YP_006862806.1|	-	0.0085	15.7	0.0	0.01	15.4	0.0	1.3	1	1	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_binding_8	PF13450.1	gi|408404823|ref|YP_006862806.1|	-	0.016	15.1	0.0	0.85	9.6	0.0	2.2	2	0	0	2	2	2	0	NAD(P)-binding	Rossmann-like	domain
Pyr_redox_3	PF13738.1	gi|408404823|ref|YP_006862806.1|	-	0.019	15.0	0.0	0.5	10.4	0.0	2.0	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.9	gi|408404823|ref|YP_006862806.1|	-	0.046	12.1	0.2	3.7	5.9	0.0	2.0	1	1	1	2	2	2	0	HI0933-like	protein
adh_short	PF00106.20	gi|408404823|ref|YP_006862806.1|	-	0.13	12.1	0.0	0.14	12.0	0.0	1.2	1	0	0	1	1	1	0	short	chain	dehydrogenase
GIDA	PF01134.17	gi|408404823|ref|YP_006862806.1|	-	0.14	10.9	0.1	1.4	7.7	0.0	1.9	1	1	1	2	2	2	0	Glucose	inhibited	division	protein	A
Pyr_redox_2	PF07992.9	gi|408404824|ref|YP_006862807.1|	-	2.2e-23	83.2	0.0	2.7e-23	82.9	0.0	1.0	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.17	gi|408404824|ref|YP_006862807.1|	-	2.9e-12	46.1	0.4	7.5e-12	44.7	0.3	1.6	1	1	0	1	1	1	1	Glucose	inhibited	division	protein	A
HI0933_like	PF03486.9	gi|408404824|ref|YP_006862807.1|	-	1.3e-05	23.8	0.6	0.0021	16.5	0.4	2.2	2	0	0	2	2	2	2	HI0933-like	protein
FAD_binding_2	PF00890.19	gi|408404824|ref|YP_006862807.1|	-	0.0002	20.3	1.7	0.00031	19.7	1.2	1.3	1	0	0	1	1	1	1	FAD	binding	domain
FAD_oxidored	PF12831.2	gi|408404824|ref|YP_006862807.1|	-	0.00056	19.1	1.8	0.00074	18.6	1.3	1.1	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
DAO	PF01266.19	gi|408404824|ref|YP_006862807.1|	-	0.0017	17.3	0.5	0.027	13.3	0.4	2.1	1	1	0	2	2	2	1	FAD	dependent	oxidoreductase
Pyr_redox_3	PF13738.1	gi|408404824|ref|YP_006862807.1|	-	0.0026	17.8	0.1	0.024	14.6	0.1	2.0	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
K_oxygenase	PF13434.1	gi|408404824|ref|YP_006862807.1|	-	0.0051	15.7	0.0	1.5	7.6	0.0	2.2	2	0	0	2	2	2	2	L-lysine	6-monooxygenase	(NADPH-requiring)
Lycopene_cycl	PF05834.7	gi|408404824|ref|YP_006862807.1|	-	0.021	13.7	0.5	0.63	8.8	0.2	2.0	2	0	0	2	2	2	0	Lycopene	cyclase	protein
Thi4	PF01946.12	gi|408404824|ref|YP_006862807.1|	-	0.061	12.4	0.6	0.095	11.7	0.1	1.5	2	0	0	2	2	2	0	Thi4	family
Trp_halogenase	PF04820.9	gi|408404824|ref|YP_006862807.1|	-	0.083	11.4	0.3	0.22	10.1	0.2	1.6	2	0	0	2	2	2	0	Tryptophan	halogenase
DUF3918	PF13056.1	gi|408404824|ref|YP_006862807.1|	-	0.093	12.0	0.1	0.23	10.8	0.1	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3918)
GATase_3	PF07685.9	gi|408404824|ref|YP_006862807.1|	-	0.15	11.6	0.0	0.31	10.6	0.0	1.5	2	0	0	2	2	2	0	CobB/CobQ-like	glutamine	amidotransferase	domain
Methyltransf_3	PF01596.12	gi|408404825|ref|YP_006862808.1|	-	7.9e-34	116.4	0.0	9.4e-34	116.2	0.0	1.1	1	0	0	1	1	1	1	O-methyltransferase
Methyltransf_24	PF13578.1	gi|408404825|ref|YP_006862808.1|	-	1e-13	51.9	0.0	1.7e-13	51.3	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|408404825|ref|YP_006862808.1|	-	1.7e-10	40.7	0.0	2.2e-10	40.2	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|408404825|ref|YP_006862808.1|	-	2.4e-10	40.9	0.1	3.5e-10	40.4	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
PCMT	PF01135.14	gi|408404825|ref|YP_006862808.1|	-	2.5e-08	33.7	0.0	3.6e-08	33.2	0.0	1.3	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_26	PF13659.1	gi|408404825|ref|YP_006862808.1|	-	4.2e-07	30.0	0.0	6e-07	29.5	0.0	1.3	1	1	0	1	1	1	1	Methyltransferase	domain
CmcI	PF04989.7	gi|408404825|ref|YP_006862808.1|	-	0.00017	20.9	0.0	0.00027	20.3	0.0	1.3	1	1	0	1	1	1	1	Cephalosporin	hydroxylase
GCD14	PF08704.5	gi|408404825|ref|YP_006862808.1|	-	0.0003	20.3	0.0	0.0004	19.9	0.0	1.1	1	0	0	1	1	1	1	tRNA	methyltransferase	complex	GCD14	subunit
Methyltransf_11	PF08241.7	gi|408404825|ref|YP_006862808.1|	-	0.017	15.6	0.0	0.033	14.6	0.0	1.5	1	0	0	1	1	1	0	Methyltransferase	domain
PrmA	PF06325.8	gi|408404825|ref|YP_006862808.1|	-	0.043	12.9	0.0	0.061	12.4	0.0	1.3	1	1	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
Ubie_methyltran	PF01209.13	gi|408404825|ref|YP_006862808.1|	-	0.066	12.3	0.1	0.096	11.7	0.0	1.3	1	0	0	1	1	1	0	ubiE/COQ5	methyltransferase	family
TRM	PF02005.11	gi|408404825|ref|YP_006862808.1|	-	0.069	12.0	0.0	0.078	11.8	0.0	1.1	1	0	0	1	1	1	0	N2,N2-dimethylguanosine	tRNA	methyltransferase
Methyltransf_21	PF05050.7	gi|408404825|ref|YP_006862808.1|	-	0.13	12.1	0.0	0.19	11.6	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	FkbM	domain
Methyltransf_15	PF09445.5	gi|408404825|ref|YP_006862808.1|	-	0.14	11.7	0.0	0.18	11.3	0.0	1.2	1	0	0	1	1	1	0	RNA	cap	guanine-N2	methyltransferase
PAC2	PF09754.4	gi|408404827|ref|YP_006862810.1|	-	1.3e-22	80.7	0.0	1.5e-22	80.5	0.0	1.0	1	0	0	1	1	1	1	PAC2	family
DUF4136	PF13590.1	gi|408404827|ref|YP_006862810.1|	-	0.032	14.2	0.1	0.06	13.3	0.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4136)
DNA_ligase_A_M	PF01068.16	gi|408404830|ref|YP_006862813.1|	-	1.1e-53	181.6	3.1	1.7e-53	181.0	2.1	1.3	1	0	0	1	1	1	1	ATP	dependent	DNA	ligase	domain
DNA_ligase_A_N	PF04675.9	gi|408404830|ref|YP_006862813.1|	-	3.2e-52	176.8	0.3	2.3e-51	174.1	0.0	2.3	2	0	0	2	2	2	1	DNA	ligase	N	terminus
DNA_ligase_A_C	PF04679.10	gi|408404830|ref|YP_006862813.1|	-	9.4e-23	80.4	0.0	3e-22	78.8	0.0	1.9	2	0	0	2	2	2	1	ATP	dependent	DNA	ligase	C	terminal	region
EH_Signature	PF15611.1	gi|408404830|ref|YP_006862813.1|	-	0.091	11.7	0.0	0.16	11.0	0.0	1.3	1	0	0	1	1	1	0	EH_Signature	domain
Ribosomal_S25	PF03297.10	gi|408404831|ref|YP_006862814.1|	-	2e-07	30.9	0.9	2.8e-07	30.5	0.6	1.3	1	0	0	1	1	1	1	S25	ribosomal	protein
MarR	PF01047.17	gi|408404831|ref|YP_006862814.1|	-	0.0011	18.6	0.2	0.0017	18.0	0.1	1.3	1	0	0	1	1	1	1	MarR	family
HTH_Crp_2	PF13545.1	gi|408404831|ref|YP_006862814.1|	-	0.0051	16.5	0.1	0.0069	16.1	0.0	1.3	1	1	0	1	1	1	1	Crp-like	helix-turn-helix	domain
TrmB	PF01978.14	gi|408404831|ref|YP_006862814.1|	-	0.0073	15.9	0.0	0.011	15.4	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Rrf2	PF02082.15	gi|408404831|ref|YP_006862814.1|	-	0.019	15.0	0.2	0.031	14.4	0.2	1.3	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_24	PF13412.1	gi|408404831|ref|YP_006862814.1|	-	0.027	13.8	0.1	0.036	13.4	0.1	1.3	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
EAP30	PF04157.11	gi|408404831|ref|YP_006862814.1|	-	0.092	11.8	0.0	0.11	11.6	0.0	1.2	1	0	0	1	1	1	0	EAP30/Vps36	family
Arb1	PF09692.5	gi|408404831|ref|YP_006862814.1|	-	0.11	11.3	0.0	0.13	11.1	0.0	1.0	1	0	0	1	1	1	0	Argonaute	siRNA	chaperone	(ARC)	complex	subunit	Arb1
z-alpha	PF02295.12	gi|408404831|ref|YP_006862814.1|	-	0.12	12.1	0.0	0.21	11.4	0.0	1.3	1	0	0	1	1	1	0	Adenosine	deaminase	z-alpha	domain
Cyclophil_like	PF04126.8	gi|408404832|ref|YP_006862815.1|	-	6.6e-09	35.3	0.0	9e-09	34.9	0.0	1.1	1	0	0	1	1	1	1	Cyclophilin-like
DUF3830	PF12903.2	gi|408404832|ref|YP_006862815.1|	-	0.00094	18.5	0.0	0.0011	18.4	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3830)
RNA_pol_Rpb6	PF01192.17	gi|408404833|ref|YP_006862816.1|	-	9.6e-10	38.0	0.0	1.7e-09	37.2	0.0	1.4	1	0	0	1	1	1	1	RNA	polymerase	Rpb6
Med3	PF11593.3	gi|408404833|ref|YP_006862816.1|	-	0.012	14.8	0.7	0.013	14.7	0.5	1.0	1	0	0	1	1	1	0	Mediator	complex	subunit	3	fungal
HTH_20	PF12840.2	gi|408404834|ref|YP_006862817.1|	-	3.6e-08	33.0	0.0	6.4e-08	32.2	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.1	gi|408404834|ref|YP_006862817.1|	-	2.3e-06	26.8	0.2	5.8e-06	25.5	0.1	1.7	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.2	gi|408404834|ref|YP_006862817.1|	-	5.4e-06	25.9	0.0	1.5e-05	24.5	0.0	1.7	1	0	0	1	1	1	1	MarR	family
HTH_27	PF13463.1	gi|408404834|ref|YP_006862817.1|	-	7.8e-05	22.9	0.1	0.00021	21.5	0.0	1.8	2	0	0	2	2	1	1	Winged	helix	DNA-binding	domain
HTH_5	PF01022.15	gi|408404834|ref|YP_006862817.1|	-	0.00021	20.8	0.1	0.00051	19.6	0.1	1.7	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
TrmB	PF01978.14	gi|408404834|ref|YP_006862817.1|	-	0.00037	20.1	0.6	0.003	17.2	0.0	2.5	3	0	0	3	3	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_45	PF14947.1	gi|408404834|ref|YP_006862817.1|	-	0.00053	19.7	0.4	0.0015	18.3	0.0	2.0	2	0	0	2	2	1	1	Winged	helix-turn-helix
HTH_11	PF08279.7	gi|408404834|ref|YP_006862817.1|	-	0.00075	19.1	0.0	0.0017	17.9	0.0	1.6	1	0	0	1	1	1	1	HTH	domain
DUF4423	PF14394.1	gi|408404834|ref|YP_006862817.1|	-	0.0014	18.2	0.0	0.0034	16.9	0.0	1.6	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4423)
DUF2250	PF10007.4	gi|408404834|ref|YP_006862817.1|	-	0.0037	17.1	0.2	0.0098	15.7	0.0	1.7	2	0	0	2	2	2	1	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_34	PF13601.1	gi|408404834|ref|YP_006862817.1|	-	0.0042	17.0	0.0	0.009	16.0	0.0	1.6	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
MarR	PF01047.17	gi|408404834|ref|YP_006862817.1|	-	0.01	15.5	0.7	0.027	14.1	0.1	2.0	2	0	0	2	2	2	0	MarR	family
Mrr_N	PF14338.1	gi|408404834|ref|YP_006862817.1|	-	0.01	15.8	0.0	0.023	14.8	0.0	1.6	1	0	0	1	1	1	0	Mrr	N-terminal	domain
HTH_IclR	PF09339.5	gi|408404834|ref|YP_006862817.1|	-	0.044	13.3	0.0	0.082	12.5	0.0	1.4	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_AsnC-type	PF13404.1	gi|408404834|ref|YP_006862817.1|	-	0.064	12.8	0.0	0.12	11.9	0.0	1.4	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
GCFC	PF07842.7	gi|408404834|ref|YP_006862817.1|	-	0.077	12.3	0.0	0.13	11.6	0.0	1.3	1	0	0	1	1	1	0	GC-rich	sequence	DNA-binding	factor-like	protein
HTH_Crp_2	PF13545.1	gi|408404834|ref|YP_006862817.1|	-	0.082	12.7	0.0	0.18	11.6	0.0	1.6	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
LZ_Tnp_IS481	PF13011.1	gi|408404834|ref|YP_006862817.1|	-	0.15	12.3	0.0	0.29	11.4	0.0	1.4	1	0	0	1	1	1	0	leucine-zipper	of	insertion	element	IS481
TFIIE_alpha	PF02002.12	gi|408404834|ref|YP_006862817.1|	-	0.22	11.0	1.4	0.34	10.4	0.1	1.9	2	0	0	2	2	2	0	TFIIE	alpha	subunit
TctB	PF07331.6	gi|408404835|ref|YP_006862818.1|	-	0.00082	19.0	1.0	0.00092	18.8	0.7	1.0	1	0	0	1	1	1	1	Tripartite	tricarboxylate	transporter	TctB	family
DUF1469	PF07332.6	gi|408404835|ref|YP_006862818.1|	-	0.0015	18.2	1.7	0.0018	18.0	1.2	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1469)
7TMR-DISM_7TM	PF07695.6	gi|408404835|ref|YP_006862818.1|	-	0.0083	15.8	1.8	0.0093	15.6	1.2	1.0	1	0	0	1	1	1	1	7TM	diverse	intracellular	signalling
DUF973	PF06157.6	gi|408404835|ref|YP_006862818.1|	-	0.041	12.8	2.2	0.048	12.6	1.5	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF973)
CbiQ	PF02361.11	gi|408404835|ref|YP_006862818.1|	-	0.14	11.7	0.9	0.16	11.4	0.6	1.0	1	0	0	1	1	1	0	Cobalt	transport	protein
DUF3098	PF11297.3	gi|408404835|ref|YP_006862818.1|	-	0.15	11.8	0.2	0.15	11.8	0.2	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3098)
IncA	PF04156.9	gi|408404835|ref|YP_006862818.1|	-	0.26	10.8	3.6	0.36	10.4	2.5	1.2	1	1	0	1	1	1	0	IncA	protein
OAD_gamma	PF04277.8	gi|408404835|ref|YP_006862818.1|	-	1.3	9.4	3.2	1.2	9.6	0.9	1.7	2	0	0	2	2	2	0	Oxaloacetate	decarboxylase,	gamma	chain
FixQ	PF05545.6	gi|408404835|ref|YP_006862818.1|	-	1.5	8.5	3.7	21	4.8	0.9	2.1	2	0	0	2	2	2	0	Cbb3-type	cytochrome	oxidase	component	FixQ
HTH_3	PF01381.17	gi|408404836|ref|YP_006862819.1|	-	3.6e-06	26.7	0.2	8.8e-06	25.4	0.1	1.6	2	0	0	2	2	2	1	Helix-turn-helix
HTH_19	PF12844.2	gi|408404836|ref|YP_006862819.1|	-	8.2e-05	22.5	0.1	0.0012	18.9	0.0	2.1	1	1	1	2	2	2	1	Helix-turn-helix	domain
HTH_37	PF13744.1	gi|408404836|ref|YP_006862819.1|	-	9e-05	22.2	0.1	0.00018	21.2	0.0	1.5	1	1	0	1	1	1	1	Helix-turn-helix	domain
P22_Cro	PF14549.1	gi|408404836|ref|YP_006862819.1|	-	0.013	15.1	0.3	0.049	13.3	0.1	2.0	1	1	1	2	2	2	0	DNA-binding	transcriptional	regulator	Cro
HTH_26	PF13443.1	gi|408404836|ref|YP_006862819.1|	-	0.029	14.5	0.1	0.089	13.0	0.0	1.8	2	0	0	2	2	2	0	Cro/C1-type	HTH	DNA-binding	domain
CPSase_L_D3	PF02787.14	gi|408404836|ref|YP_006862819.1|	-	0.045	13.5	0.0	0.059	13.1	0.0	1.2	1	0	0	1	1	1	0	Carbamoyl-phosphate	synthetase	large	chain,	oligomerisation	domain
HTH_23	PF13384.1	gi|408404836|ref|YP_006862819.1|	-	0.13	11.9	0.1	0.46	10.2	0.0	1.9	1	1	1	2	2	2	0	Homeodomain-like	domain
ADH_N	PF08240.7	gi|408404837|ref|YP_006862820.1|	-	2.2e-24	85.3	2.4	2.2e-24	85.3	1.6	1.6	2	0	0	2	2	2	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.21	gi|408404837|ref|YP_006862820.1|	-	7e-22	77.3	0.0	1.4e-21	76.4	0.0	1.5	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
HI0933_like	PF03486.9	gi|408404837|ref|YP_006862820.1|	-	0.0023	16.4	0.1	0.0034	15.9	0.0	1.2	1	0	0	1	1	1	1	HI0933-like	protein
FAD_binding_3	PF01494.14	gi|408404837|ref|YP_006862820.1|	-	0.023	13.7	0.0	0.039	12.9	0.0	1.3	1	0	0	1	1	1	0	FAD	binding	domain
Pyr_redox_2	PF07992.9	gi|408404837|ref|YP_006862820.1|	-	0.054	13.3	1.1	0.23	11.3	0.4	2.2	1	1	1	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.1	gi|408404837|ref|YP_006862820.1|	-	0.11	12.5	0.1	0.19	11.7	0.0	1.4	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
Laminin_G_3	PF13385.1	gi|408404839|ref|YP_006862822.1|	-	4.6e-28	98.4	1.7	6.6e-28	97.9	1.2	1.2	1	0	0	1	1	1	1	Concanavalin	A-like	lectin/glucanases	superfamily
Laminin_G_2	PF02210.19	gi|408404839|ref|YP_006862822.1|	-	0.00029	20.8	0.1	0.0004	20.4	0.0	1.2	1	0	0	1	1	1	1	Laminin	G	domain
Laminin_G_1	PF00054.18	gi|408404839|ref|YP_006862822.1|	-	0.004	17.1	0.0	0.0077	16.2	0.0	1.4	1	1	0	1	1	1	1	Laminin	G	domain
DUF1080	PF06439.6	gi|408404839|ref|YP_006862822.1|	-	0.028	14.3	0.2	0.049	13.5	0.2	1.4	1	0	0	1	1	1	0	Domain	of	Unknown	Function	(DUF1080)
DeoC	PF01791.4	gi|408404841|ref|YP_006862824.1|	-	7.9e-17	61.3	0.0	1.1e-16	60.9	0.0	1.2	1	0	0	1	1	1	1	DeoC/LacD	family	aldolase
SnoaL_3	PF13474.1	gi|408404842|ref|YP_006862825.1|	-	4.8e-08	33.0	0.0	5.7e-08	32.8	0.0	1.1	1	0	0	1	1	1	1	SnoaL-like	domain
CaMKII_AD	PF08332.5	gi|408404842|ref|YP_006862825.1|	-	0.00087	19.1	0.2	0.0011	18.8	0.1	1.3	1	1	0	1	1	1	1	Calcium/calmodulin	dependent	protein	kinase	II	Association
Pyridox_oxidase	PF01243.15	gi|408404843|ref|YP_006862826.1|	-	7.6e-14	51.4	0.0	9.5e-14	51.1	0.0	1.1	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
TPP_enzyme_N	PF02776.13	gi|408404844|ref|YP_006862827.1|	-	5.3e-62	208.3	0.9	6.7e-61	204.7	0.2	2.3	2	1	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
TPP_enzyme_C	PF02775.16	gi|408404844|ref|YP_006862827.1|	-	3.7e-45	153.2	0.8	5.6e-44	149.4	0.3	2.6	2	1	1	3	3	3	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
TPP_enzyme_M	PF00205.17	gi|408404844|ref|YP_006862827.1|	-	9.3e-45	151.7	0.1	2.9e-44	150.1	0.1	1.9	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	central	domain
DegT_DnrJ_EryC1	PF01041.12	gi|408404844|ref|YP_006862827.1|	-	0.077	12.0	0.3	1.7	7.6	0.0	2.2	2	0	0	2	2	2	0	DegT/DnrJ/EryC1/StrS	aminotransferase	family
GCR1_C	PF12550.3	gi|408404844|ref|YP_006862827.1|	-	0.27	11.1	1.5	0.31	10.9	0.2	1.7	2	0	0	2	2	2	0	Transcriptional	activator	of	glycolytic	enzymes
ALS_ss_C	PF10369.4	gi|408404845|ref|YP_006862828.1|	-	3.6e-29	100.2	0.9	2.9e-27	94.1	0.0	2.6	2	1	0	2	2	2	1	Small	subunit	of	acetolactate	synthase
ACT_5	PF13710.1	gi|408404845|ref|YP_006862828.1|	-	1.1e-20	73.1	0.9	3.5e-20	71.5	0.4	1.9	2	0	0	2	2	2	1	ACT	domain
ACT	PF01842.20	gi|408404845|ref|YP_006862828.1|	-	5.4e-16	57.7	0.0	1e-15	56.8	0.0	1.5	1	0	0	1	1	1	1	ACT	domain
ACT_4	PF13291.1	gi|408404845|ref|YP_006862828.1|	-	1.7e-06	28.2	0.7	3.3e-06	27.3	0.4	1.6	2	0	0	2	2	2	1	ACT	domain
Acylphosphatase	PF00708.13	gi|408404845|ref|YP_006862828.1|	-	0.01	15.9	0.0	1.9	8.6	0.0	2.2	2	0	0	2	2	2	1	Acylphosphatase
Saccharop_dh_N	PF04455.7	gi|408404845|ref|YP_006862828.1|	-	0.015	15.4	0.2	0.034	14.2	0.1	1.5	1	1	0	1	1	1	0	LOR/SDH	bifunctional	enzyme	conserved	region
NIL	PF09383.5	gi|408404845|ref|YP_006862828.1|	-	0.02	14.4	0.1	3	7.4	0.0	2.3	2	0	0	2	2	2	0	NIL	domain
Trans_reg_C	PF00486.23	gi|408404845|ref|YP_006862828.1|	-	0.028	14.3	0.3	0.14	12.1	0.2	2.0	1	1	1	2	2	2	0	Transcriptional	regulatory	protein,	C	terminal
ZipA_C	PF04354.8	gi|408404845|ref|YP_006862828.1|	-	0.044	13.2	0.0	0.075	12.5	0.0	1.4	1	0	0	1	1	1	0	ZipA,	C-terminal	FtsZ-binding	domain
HMGL-like	PF00682.14	gi|408404846|ref|YP_006862829.1|	-	2.4e-80	269.5	2.9	2.4e-80	269.5	2.0	1.9	3	0	0	3	3	3	1	HMGL-like
LeuA_dimer	PF08502.5	gi|408404846|ref|YP_006862829.1|	-	8.1e-30	103.3	3.8	8.1e-30	103.3	2.6	1.8	2	0	0	2	2	2	1	LeuA	allosteric	(dimerisation)	domain
UPF0154	PF03672.8	gi|408404846|ref|YP_006862829.1|	-	0.1	12.1	0.0	0.28	10.8	0.0	1.7	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0154)
Iso_dh	PF00180.15	gi|408404847|ref|YP_006862830.1|	-	3.7e-97	325.3	0.1	4.4e-97	325.1	0.1	1.0	1	0	0	1	1	1	1	Isocitrate/isopropylmalate	dehydrogenase
PdxA	PF04166.7	gi|408404847|ref|YP_006862830.1|	-	0.004	16.4	0.0	0.008	15.4	0.0	1.5	1	0	0	1	1	1	1	Pyridoxal	phosphate	biosynthetic	protein	PdxA
HTH_45	PF14947.1	gi|408404848|ref|YP_006862831.1|	-	3.5e-05	23.5	0.1	6e-05	22.7	0.1	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_5	PF01022.15	gi|408404848|ref|YP_006862831.1|	-	0.00045	19.8	0.4	0.0021	17.6	0.0	2.0	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.2	gi|408404848|ref|YP_006862831.1|	-	0.00059	19.5	0.1	0.0013	18.4	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
Ly49	PF08391.5	gi|408404848|ref|YP_006862831.1|	-	0.028	14.5	0.1	0.085	12.9	0.0	1.7	2	0	0	2	2	2	0	Ly49-like	protein,	N-terminal	region
HTH_27	PF13463.1	gi|408404848|ref|YP_006862831.1|	-	0.07	13.4	0.0	0.13	12.6	0.0	1.5	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
DUF3465	PF11948.3	gi|408404848|ref|YP_006862831.1|	-	0.13	12.0	0.1	0.23	11.2	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3465)
SIMPL	PF04402.9	gi|408404849|ref|YP_006862832.1|	-	6.7e-28	97.9	7.7	1.5e-17	64.1	2.1	2.2	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF541)
CheR	PF01739.13	gi|408404849|ref|YP_006862832.1|	-	0.11	11.7	2.0	0.28	10.4	0.3	2.1	2	0	0	2	2	2	0	CheR	methyltransferase,	SAM	binding	domain
RSN1_TM	PF13967.1	gi|408404850|ref|YP_006862833.1|	-	0.0038	16.7	1.1	0.0049	16.4	0.1	1.6	2	0	0	2	2	2	1	Late	exocytosis,	associated	with	Golgi	transport
PHF5	PF03660.9	gi|408404850|ref|YP_006862833.1|	-	0.015	15.3	9.7	0.074	13.1	4.2	2.1	1	1	1	2	2	2	0	PHF5-like	protein
zf-B_box	PF00643.19	gi|408404850|ref|YP_006862833.1|	-	0.021	14.7	7.0	0.021	14.7	4.9	1.9	2	0	0	2	2	2	0	B-box	zinc	finger
zf-C3HC4_3	PF13920.1	gi|408404850|ref|YP_006862833.1|	-	0.065	12.9	11.0	0.092	12.4	7.7	1.2	1	0	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
FYVE_2	PF02318.11	gi|408404850|ref|YP_006862833.1|	-	0.6	10.0	8.1	0.85	9.5	5.6	1.2	1	0	0	1	1	1	0	FYVE-type	zinc	finger
RDD	PF06271.7	gi|408404850|ref|YP_006862833.1|	-	0.69	9.8	6.9	1.6	8.6	4.8	1.5	1	1	0	1	1	1	0	RDD	family
zf-C3HC4	PF00097.20	gi|408404850|ref|YP_006862833.1|	-	1.9	8.2	11.9	2.7	7.7	8.2	1.3	1	0	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
CPSase_sm_chain	PF00988.17	gi|408404851|ref|YP_006862834.1|	-	5.4e-50	168.2	0.0	9.1e-50	167.5	0.0	1.4	1	0	0	1	1	1	1	Carbamoyl-phosphate	synthase	small	chain,	CPSase	domain
GATase	PF00117.23	gi|408404851|ref|YP_006862834.1|	-	8.5e-45	152.5	0.0	1.3e-44	151.9	0.0	1.3	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.8	gi|408404851|ref|YP_006862834.1|	-	1.4e-09	37.6	0.2	5.5e-07	29.2	0.1	2.5	1	1	0	1	1	1	1	Peptidase	C26
CPSase_L_D2	PF02786.12	gi|408404852|ref|YP_006862835.1|	-	6e-109	362.2	0.0	2.3e-75	252.4	0.0	2.3	2	0	0	2	2	2	2	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
CPSase_L_D3	PF02787.14	gi|408404852|ref|YP_006862835.1|	-	2.6e-44	149.9	0.2	5.7e-44	148.8	0.2	1.6	1	0	0	1	1	1	1	Carbamoyl-phosphate	synthetase	large	chain,	oligomerisation	domain
CPSase_L_chain	PF00289.17	gi|408404852|ref|YP_006862835.1|	-	7.2e-32	109.7	0.2	1.2e-17	63.9	0.0	3.4	3	0	0	3	3	3	2	Carbamoyl-phosphate	synthase	L	chain,	N-terminal	domain
ATP-grasp_4	PF13535.1	gi|408404852|ref|YP_006862835.1|	-	3e-30	105.3	0.0	3.6e-16	59.4	0.0	2.5	2	0	0	2	2	2	2	ATP-grasp	domain
ATPgrasp_Ter	PF15632.1	gi|408404852|ref|YP_006862835.1|	-	2.6e-22	79.0	0.0	7.4e-13	47.9	0.0	3.7	2	2	0	2	2	2	2	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
ATP-grasp	PF02222.17	gi|408404852|ref|YP_006862835.1|	-	2.7e-14	52.9	0.3	2.9e-06	26.7	0.0	2.7	2	0	0	2	2	2	2	ATP-grasp	domain
MGS	PF02142.17	gi|408404852|ref|YP_006862835.1|	-	2.6e-13	49.7	0.6	1.3e-12	47.4	0.0	2.6	4	0	0	4	4	4	1	MGS-like	domain
Dala_Dala_lig_C	PF07478.8	gi|408404852|ref|YP_006862835.1|	-	1.3e-10	41.0	0.5	1.8e-07	30.7	0.0	2.5	2	0	0	2	2	2	2	D-ala	D-ala	ligase	C-terminus
GARS_A	PF01071.14	gi|408404852|ref|YP_006862835.1|	-	8.3e-06	25.5	0.1	0.00094	18.7	0.0	2.8	2	0	0	2	2	2	1	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
ATP-grasp_5	PF13549.1	gi|408404852|ref|YP_006862835.1|	-	0.00011	21.5	0.0	0.11	11.7	0.0	2.8	2	0	0	2	2	2	2	ATP-grasp	domain
ATP-grasp_2	PF08442.5	gi|408404852|ref|YP_006862835.1|	-	0.006	15.9	0.0	0.033	13.5	0.0	2.2	2	0	0	2	2	2	1	ATP-grasp	domain
Peripla_BP_6	PF13458.1	gi|408404852|ref|YP_006862835.1|	-	0.061	12.6	0.0	2.7	7.2	0.0	2.6	2	1	1	3	3	3	0	Periplasmic	binding	protein
DUF4336	PF14234.1	gi|408404853|ref|YP_006862836.1|	-	0.046	12.8	0.0	0.052	12.7	0.0	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4336)
Synaptobrevin	PF00957.16	gi|408404854|ref|YP_006862837.1|	-	0.0055	16.2	0.8	0.0071	15.9	0.0	1.5	2	0	0	2	2	2	1	Synaptobrevin
DUF4184	PF13803.1	gi|408404854|ref|YP_006862837.1|	-	0.017	14.4	0.5	0.019	14.2	0.3	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4184)
Methyltrn_RNA_4	PF09936.4	gi|408404854|ref|YP_006862837.1|	-	0.037	13.5	0.0	0.045	13.2	0.0	1.1	1	0	0	1	1	1	0	SAM-dependent	RNA	methyltransferase
Gemini_mov	PF01708.11	gi|408404854|ref|YP_006862837.1|	-	0.48	10.0	2.1	3.5	7.2	0.1	2.0	1	1	1	2	2	2	0	Geminivirus	putative	movement	protein
Sec62	PF03839.11	gi|408404854|ref|YP_006862837.1|	-	8.3	5.7	7.9	0.85	8.9	1.7	1.7	1	1	1	2	2	2	0	Translocation	protein	Sec62
Response_reg	PF00072.19	gi|408404855|ref|YP_006862838.1|	-	1.6e-09	37.7	0.0	1.6e-09	37.7	0.0	1.0	1	0	0	1	1	1	1	Response	regulator	receiver	domain
FtsX	PF02687.16	gi|408404856|ref|YP_006862839.1|	-	0.062	13.0	0.0	0.062	13.0	0.0	1.1	1	0	0	1	1	1	0	FtsX-like	permease	family
DUF385	PF04075.9	gi|408404858|ref|YP_006862841.1|	-	1e-09	38.4	0.1	1.2e-09	38.2	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF385)
DUF2255	PF10012.4	gi|408404858|ref|YP_006862841.1|	-	2.6e-09	37.0	0.1	2.9e-09	36.9	0.0	1.1	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2255)
Metallophos	PF00149.23	gi|408404859|ref|YP_006862842.1|	-	1.4e-08	34.3	0.2	1.3e-07	31.2	0.0	2.1	2	0	0	2	2	2	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.2	gi|408404859|ref|YP_006862842.1|	-	3.8e-08	33.3	0.0	8.6e-08	32.1	0.0	1.5	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
SWIM	PF04434.12	gi|408404860|ref|YP_006862843.1|	-	0.07	12.6	0.2	0.1	12.0	0.2	1.3	1	0	0	1	1	1	0	SWIM	zinc	finger
LEA_5	PF00477.12	gi|408404861|ref|YP_006862844.1|	-	5.5e-10	39.4	20.3	9.3e-07	29.1	4.9	3.0	1	1	2	3	3	3	3	Small	hydrophilic	plant	seed	protein
KGG	PF10685.4	gi|408404861|ref|YP_006862844.1|	-	8.4e-07	28.7	15.8	0.69	9.9	0.0	5.6	5	0	0	5	5	5	4	Stress-induced	bacterial	acidophilic	repeat	motif
GARS_A	PF01071.14	gi|408404862|ref|YP_006862845.1|	-	6.7e-79	263.9	0.2	9.1e-79	263.5	0.2	1.2	1	0	0	1	1	1	1	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
GARS_N	PF02844.10	gi|408404862|ref|YP_006862845.1|	-	7.2e-33	113.0	0.0	1.4e-32	112.0	0.0	1.5	1	0	0	1	1	1	1	Phosphoribosylglycinamide	synthetase,	N	domain
GARS_C	PF02843.11	gi|408404862|ref|YP_006862845.1|	-	9.4e-28	96.2	0.3	2.2e-27	95.0	0.2	1.6	1	0	0	1	1	1	1	Phosphoribosylglycinamide	synthetase,	C	domain
ATP-grasp_4	PF13535.1	gi|408404862|ref|YP_006862845.1|	-	3.3e-16	59.5	0.0	5.8e-16	58.7	0.0	1.3	1	0	0	1	1	1	1	ATP-grasp	domain
ATPgrasp_Ter	PF15632.1	gi|408404862|ref|YP_006862845.1|	-	1.4e-07	30.6	0.0	2.2e-05	23.3	0.0	2.1	2	0	0	2	2	2	2	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
ATP-grasp_3	PF02655.9	gi|408404862|ref|YP_006862845.1|	-	2e-06	27.7	0.0	4.4e-06	26.6	0.0	1.6	1	0	0	1	1	1	1	ATP-grasp	domain
ATP-grasp	PF02222.17	gi|408404862|ref|YP_006862845.1|	-	6.7e-05	22.2	0.0	0.00013	21.4	0.0	1.4	1	0	0	1	1	1	1	ATP-grasp	domain
CPSase_L_D2	PF02786.12	gi|408404862|ref|YP_006862845.1|	-	8.3e-05	21.9	0.3	0.00029	20.1	0.2	1.9	1	1	0	1	1	1	1	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
ATP-grasp_2	PF08442.5	gi|408404862|ref|YP_006862845.1|	-	0.00016	21.0	0.2	0.00058	19.2	0.1	1.8	2	0	0	2	2	2	1	ATP-grasp	domain
Dala_Dala_lig_C	PF07478.8	gi|408404862|ref|YP_006862845.1|	-	0.0002	20.8	0.0	0.00037	19.9	0.0	1.4	1	1	0	1	1	1	1	D-ala	D-ala	ligase	C-terminus
RimK	PF08443.6	gi|408404862|ref|YP_006862845.1|	-	0.0002	20.8	0.0	0.00062	19.2	0.0	1.8	2	0	0	2	2	2	1	RimK-like	ATP-grasp	domain
Polysacc_deac_2	PF04748.8	gi|408404862|ref|YP_006862845.1|	-	0.014	14.4	0.3	0.03	13.3	0.2	1.5	1	0	0	1	1	1	0	Divergent	polysaccharide	deacetylase
ATPgrasp_ST	PF14397.1	gi|408404862|ref|YP_006862845.1|	-	0.017	14.2	0.1	0.043	12.8	0.0	1.7	2	0	0	2	2	2	0	Sugar-transfer	associated	ATP-grasp
ATP-grasp_5	PF13549.1	gi|408404862|ref|YP_006862845.1|	-	0.027	13.6	0.1	0.049	12.8	0.1	1.4	1	0	0	1	1	1	0	ATP-grasp	domain
5-FTHF_cyc-lig	PF01812.15	gi|408404863|ref|YP_006862846.1|	-	4.5e-38	130.8	0.0	5.1e-38	130.7	0.0	1.0	1	0	0	1	1	1	1	5-formyltetrahydrofolate	cyclo-ligase	family
THF_DHG_CYH_C	PF02882.14	gi|408404864|ref|YP_006862847.1|	-	3.6e-63	211.4	1.3	5.2e-63	210.9	0.9	1.2	1	0	0	1	1	1	1	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
THF_DHG_CYH	PF00763.18	gi|408404864|ref|YP_006862847.1|	-	3.5e-41	139.8	0.6	1.5e-40	137.8	0.1	2.0	2	0	0	2	2	2	1	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	catalytic	domain
Semialdhyde_dh	PF01118.19	gi|408404864|ref|YP_006862847.1|	-	0.018	15.3	0.1	0.068	13.4	0.0	2.1	2	1	0	2	2	2	0	Semialdehyde	dehydrogenase,	NAD	binding	domain
HTH_45	PF14947.1	gi|408404865|ref|YP_006862848.1|	-	5.1e-21	74.2	1.6	5.9e-21	74.0	1.1	1.0	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF4364	PF14277.1	gi|408404865|ref|YP_006862848.1|	-	0.00055	19.5	0.6	0.00062	19.4	0.4	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4364)
HTH_24	PF13412.1	gi|408404865|ref|YP_006862848.1|	-	0.053	12.9	0.0	0.092	12.1	0.0	1.5	1	1	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_27	PF13463.1	gi|408404865|ref|YP_006862848.1|	-	0.093	13.0	0.1	0.13	12.6	0.1	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
DUF4423	PF14394.1	gi|408404865|ref|YP_006862848.1|	-	0.097	12.2	0.0	0.11	12.0	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
DAGK_cat	PF00781.19	gi|408404866|ref|YP_006862849.1|	-	4.8e-18	64.8	0.3	1.1e-17	63.6	0.1	1.6	2	0	0	2	2	2	1	Diacylglycerol	kinase	catalytic	domain
NAD_kinase	PF01513.16	gi|408404866|ref|YP_006862849.1|	-	0.00013	20.8	0.2	0.00036	19.4	0.1	1.8	2	0	0	2	2	2	1	ATP-NAD	kinase
RVT_N	PF13655.1	gi|408404867|ref|YP_006862850.1|	-	0.44	10.6	4.8	14	5.8	0.2	3.2	1	1	1	2	2	2	0	N-terminal	domain	of	reverse	transcriptase
Cytochrom_B562	PF07361.6	gi|408404867|ref|YP_006862850.1|	-	0.83	10.0	5.8	6	7.3	0.5	2.2	2	0	0	2	2	2	0	Cytochrome	b562
TMF_DNA_bd	PF12329.3	gi|408404867|ref|YP_006862850.1|	-	1.5	8.6	7.3	3.3	7.5	0.4	2.7	2	1	0	2	2	2	0	TATA	element	modulatory	factor	1	DNA	binding
Ribosomal_L37e	PF01907.14	gi|408404868|ref|YP_006862851.1|	-	3e-23	81.3	10.7	3.5e-23	81.1	7.4	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L37e
DNA_RNApol_7kD	PF03604.8	gi|408404868|ref|YP_006862851.1|	-	0.00069	19.0	6.5	0.013	14.9	2.0	2.2	2	0	0	2	2	2	1	DNA	directed	RNA	polymerase,	7	kDa	subunit
HypA	PF01155.14	gi|408404868|ref|YP_006862851.1|	-	0.0035	17.0	0.4	0.0037	16.9	0.3	1.1	1	0	0	1	1	1	1	Hydrogenase	expression/synthesis	hypA	family
DZR	PF12773.2	gi|408404868|ref|YP_006862851.1|	-	0.0064	16.2	1.3	0.0083	15.9	0.9	1.3	1	0	0	1	1	1	1	Double	zinc	ribbon
zinc_ribbon_6	PF14599.1	gi|408404868|ref|YP_006862851.1|	-	0.0065	16.2	1.7	0.009	15.7	1.2	1.2	1	0	0	1	1	1	1	Zinc-ribbon
Stc1	PF12898.2	gi|408404868|ref|YP_006862851.1|	-	0.011	15.7	1.0	0.012	15.6	0.7	1.1	1	0	0	1	1	1	0	Stc1	domain
OrfB_Zn_ribbon	PF07282.6	gi|408404868|ref|YP_006862851.1|	-	0.038	13.6	3.1	0.048	13.3	2.2	1.3	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
zinc_ribbon_2	PF13240.1	gi|408404868|ref|YP_006862851.1|	-	0.046	13.2	5.8	0.073	12.5	4.0	1.3	1	0	0	1	1	1	0	zinc-ribbon	domain
Zn-ribbon_8	PF09723.5	gi|408404868|ref|YP_006862851.1|	-	0.11	12.4	2.6	1.9	8.4	0.1	2.1	1	1	1	2	2	2	0	Zinc	ribbon	domain
zf-ribbon_3	PF13248.1	gi|408404868|ref|YP_006862851.1|	-	0.15	11.3	4.7	0.31	10.3	3.2	1.6	1	1	0	1	1	1	0	zinc-ribbon	domain
GCC2_GCC3	PF07699.8	gi|408404868|ref|YP_006862851.1|	-	0.17	11.4	4.0	0.3	10.7	2.8	1.4	1	0	0	1	1	1	0	GCC2	and	GCC3
UPF0547	PF10571.4	gi|408404868|ref|YP_006862851.1|	-	0.21	11.2	6.8	2.2	8.0	0.3	2.3	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
DUF35_N	PF12172.3	gi|408404868|ref|YP_006862851.1|	-	0.27	11.1	5.3	0.39	10.6	3.7	1.3	1	0	0	1	1	1	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
zinc_ribbon_4	PF13717.1	gi|408404868|ref|YP_006862851.1|	-	0.45	10.2	6.2	0.59	9.8	0.4	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-ISL3	PF14690.1	gi|408404868|ref|YP_006862851.1|	-	0.48	10.4	10.2	1.2	9.2	2.6	2.2	1	1	1	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
zinc_ribbon_5	PF13719.1	gi|408404868|ref|YP_006862851.1|	-	0.66	9.6	6.5	0.78	9.3	0.4	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
RNA_POL_M_15KD	PF02150.11	gi|408404868|ref|YP_006862851.1|	-	1.6	8.4	6.7	35	4.1	0.5	2.1	1	1	1	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
DUF2082	PF09855.4	gi|408404868|ref|YP_006862851.1|	-	2	8.3	4.0	4.3	7.2	0.2	2.1	1	1	1	2	2	2	0	Nucleic-acid-binding	protein	containing	Zn-ribbon	domain	(DUF2082)
Ribosomal_S14	PF00253.16	gi|408404868|ref|YP_006862851.1|	-	2.9	7.3	10.7	0.82	9.1	0.6	2.1	1	1	1	2	2	2	0	Ribosomal	protein	S14p/S29e
YhfH	PF14149.1	gi|408404868|ref|YP_006862851.1|	-	7.6	6.4	9.3	10	5.9	0.7	2.2	1	1	0	2	2	2	0	YhfH-like	protein
LSM	PF01423.17	gi|408404869|ref|YP_006862852.1|	-	4.4e-22	77.3	1.6	5.1e-22	77.2	1.1	1.0	1	0	0	1	1	1	1	LSM	domain
SM-ATX	PF14438.1	gi|408404869|ref|YP_006862852.1|	-	0.017	15.0	0.1	0.019	14.8	0.1	1.2	1	0	0	1	1	1	0	Ataxin	2	SM	domain
Creatininase	PF02633.9	gi|408404870|ref|YP_006862853.1|	-	7.6e-65	218.3	0.1	9.3e-65	218.0	0.1	1.0	1	0	0	1	1	1	1	Creatinine	amidohydrolase
zf-C4_ClpX	PF06689.8	gi|408404870|ref|YP_006862853.1|	-	0.1	12.1	0.3	0.17	11.4	0.2	1.3	1	0	0	1	1	1	0	ClpX	C4-type	zinc	finger
DUF3704	PF12488.3	gi|408404870|ref|YP_006862853.1|	-	0.14	11.7	0.9	0.89	9.2	0.0	2.6	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3704)
Formyl_trans_N	PF00551.14	gi|408404871|ref|YP_006862854.1|	-	2e-44	151.2	0.1	2.7e-44	150.8	0.0	1.2	1	0	0	1	1	1	1	Formyl	transferase
ACT_6	PF13740.1	gi|408404871|ref|YP_006862854.1|	-	2e-11	43.4	0.0	4.1e-11	42.4	0.0	1.5	1	0	0	1	1	1	1	ACT	domain
ACT	PF01842.20	gi|408404871|ref|YP_006862854.1|	-	2.1e-08	33.4	0.5	1e-07	31.2	0.1	2.2	2	0	0	2	2	2	1	ACT	domain
ACT_4	PF13291.1	gi|408404871|ref|YP_006862854.1|	-	4.9e-05	23.5	0.5	0.0001	22.5	0.0	1.8	2	0	0	2	2	2	1	ACT	domain
CbiG_C	PF01890.11	gi|408404871|ref|YP_006862854.1|	-	0.14	12.3	0.1	4.8	7.4	0.0	2.6	3	0	0	3	3	3	0	Cobalamin	synthesis	G	C-terminus
N6_Mtase	PF02384.11	gi|408404872|ref|YP_006862855.1|	-	1.7e-15	56.8	0.1	1.2e-07	31.1	0.0	2.5	2	0	0	2	2	2	2	N-6	DNA	Methylase
Methyltransf_26	PF13659.1	gi|408404872|ref|YP_006862855.1|	-	2.1e-13	50.3	0.0	5.3e-13	49.0	0.0	1.7	1	0	0	1	1	1	1	Methyltransferase	domain
Eco57I	PF07669.6	gi|408404872|ref|YP_006862855.1|	-	3.5e-06	27.3	0.0	1.1e-05	25.6	0.0	1.9	1	0	0	1	1	1	1	Eco57I	restriction-modification	methylase
UPF0020	PF01170.13	gi|408404872|ref|YP_006862855.1|	-	9.8e-05	22.0	0.0	0.052	13.1	0.0	2.7	2	0	0	2	2	2	2	Putative	RNA	methylase	family	UPF0020
MTS	PF05175.9	gi|408404872|ref|YP_006862855.1|	-	0.00048	19.5	0.6	0.26	10.6	0.0	3.5	3	1	0	3	3	3	1	Methyltransferase	small	domain
Methyltransf_31	PF13847.1	gi|408404872|ref|YP_006862855.1|	-	0.0072	15.9	0.0	0.87	9.1	0.0	3.2	3	0	0	3	3	3	1	Methyltransferase	domain
P16-Arc	PF04699.9	gi|408404872|ref|YP_006862855.1|	-	0.049	13.6	0.0	0.26	11.2	0.0	2.3	1	0	0	1	1	1	0	ARP2/3	complex	16	kDa	subunit	(p16-Arc)
DUF1128	PF06569.6	gi|408404872|ref|YP_006862855.1|	-	0.067	12.9	0.4	0.97	9.1	0.1	2.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1128)
DDE_Tnp_IS240	PF13610.1	gi|408404873|ref|YP_006862856.1|	-	5.5e-21	74.9	1.8	1.3e-20	73.8	1.2	1.6	1	0	0	1	1	1	1	DDE	domain
DDE_Tnp_IS66	PF03050.9	gi|408404873|ref|YP_006862856.1|	-	9.6e-11	41.4	0.3	1.7e-10	40.5	0.2	1.5	1	1	0	1	1	1	1	Transposase	IS66	family
rve_3	PF13683.1	gi|408404873|ref|YP_006862856.1|	-	1.1e-09	37.7	0.1	4e-09	35.8	0.1	2.0	1	0	0	1	1	1	1	Integrase	core	domain
rve	PF00665.21	gi|408404873|ref|YP_006862856.1|	-	2.7e-08	33.9	0.7	7.7e-08	32.4	0.1	2.0	2	0	0	2	2	2	1	Integrase	core	domain
SWIM	PF04434.12	gi|408404873|ref|YP_006862856.1|	-	3.8e-08	32.6	0.1	9.1e-08	31.4	0.0	1.6	1	0	0	1	1	1	1	SWIM	zinc	finger
Zn_Tnp_IS1	PF03811.8	gi|408404873|ref|YP_006862856.1|	-	8.5e-06	25.1	0.3	2.2e-05	23.8	0.2	1.8	1	0	0	1	1	1	1	InsA	N-terminal	domain
Transposase_mut	PF00872.13	gi|408404873|ref|YP_006862856.1|	-	7.6e-05	21.4	0.3	0.012	14.1	0.0	2.3	2	0	0	2	2	2	2	Transposase,	Mutator	family
KLRAQ	PF10205.4	gi|408404873|ref|YP_006862856.1|	-	0.084	12.9	0.2	0.18	11.8	0.1	1.5	1	0	0	1	1	1	0	Predicted	coiled-coil	domain-containing	protein
Antitoxin-MazE	PF04014.13	gi|408404874|ref|YP_006862857.1|	-	3.3e-07	29.8	0.1	4.2e-07	29.5	0.0	1.1	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE
DDE_Tnp_1	PF01609.16	gi|408404879|ref|YP_006862862.1|	-	1.6e-05	24.5	0.8	4.8e-05	23.0	0.6	1.7	1	1	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_6	PF13751.1	gi|408404879|ref|YP_006862862.1|	-	4.6e-05	23.4	0.0	6.2e-05	22.9	0.0	1.2	1	0	0	1	1	1	1	Transposase	DDE	domain
RAP1	PF07218.6	gi|408404879|ref|YP_006862862.1|	-	0.00015	20.0	0.3	0.00016	19.9	0.2	1.0	1	0	0	1	1	1	1	Rhoptry-associated	protein	1	(RAP-1)
DDE_Tnp_1_2	PF13586.1	gi|408404879|ref|YP_006862862.1|	-	0.12	12.5	0.2	1.9	8.7	0.1	2.2	1	1	0	1	1	1	0	Transposase	DDE	domain
zf-HC5HC2H_2	PF13832.1	gi|408404880|ref|YP_006862863.1|	-	0.023	14.6	4.5	0.026	14.5	3.2	1.1	1	0	0	1	1	1	0	PHD-zinc-finger	like	domain
zf-tcix	PF14952.1	gi|408404880|ref|YP_006862863.1|	-	0.041	13.2	1.4	0.062	12.6	1.0	1.3	1	0	0	1	1	1	0	Putative	treble-clef,	zinc-finger,	Zn-binding
zf-HIT	PF04438.11	gi|408404880|ref|YP_006862863.1|	-	0.36	10.5	4.4	0.62	9.7	3.1	1.4	1	0	0	1	1	1	0	HIT	zinc	finger
zf-AN1	PF01428.11	gi|408404880|ref|YP_006862863.1|	-	0.84	9.5	11.2	1.4	8.8	7.7	1.4	1	0	0	1	1	1	0	AN1-like	Zinc	finger
Copper-bind	PF00127.15	gi|408404881|ref|YP_006862864.1|	-	5.9e-08	32.8	0.1	5.9e-08	32.8	0.1	2.2	2	0	0	2	2	2	1	Copper	binding	proteins,	plastocyanin/azurin	family
Cupredoxin_1	PF13473.1	gi|408404881|ref|YP_006862864.1|	-	4.8e-06	26.3	1.8	8.4e-06	25.6	0.1	2.2	2	1	0	2	2	2	1	Cupredoxin-like	domain
YibE_F	PF07907.6	gi|408404882|ref|YP_006862865.1|	-	0.011	14.9	1.5	0.022	13.9	1.0	1.5	1	0	0	1	1	1	0	YibE/F-like	protein
DUF3040	PF11239.3	gi|408404882|ref|YP_006862865.1|	-	0.13	12.3	0.1	0.13	12.3	0.1	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3040)
Polysacc_synt_C	PF14667.1	gi|408404882|ref|YP_006862865.1|	-	0.4	10.4	8.6	0.086	12.6	3.7	1.6	2	0	0	2	2	2	0	Polysaccharide	biosynthesis	C-terminal	domain
YuiB	PF14068.1	gi|408404882|ref|YP_006862865.1|	-	0.49	10.7	11.6	0.03	14.6	3.2	2.2	2	1	1	3	3	3	0	Putative	membrane	protein
OppC_N	PF12911.2	gi|408404882|ref|YP_006862865.1|	-	2.1	7.7	4.6	0.91	8.9	0.1	2.4	2	0	0	2	2	2	0	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
Cyt_c_ox_IV	PF12270.3	gi|408404882|ref|YP_006862865.1|	-	2.5	7.8	6.8	0.58	9.9	1.8	2.0	3	0	0	3	3	3	0	Cytochrome	c	oxidase	subunit	IV
PAC2	PF09754.4	gi|408404883|ref|YP_006862866.1|	-	1.2e-39	136.4	0.0	1.5e-39	136.1	0.0	1.0	1	0	0	1	1	1	1	PAC2	family
tRNA_anti-codon	PF01336.20	gi|408404884|ref|YP_006862867.1|	-	4e-09	36.1	0.2	5.1e-09	35.8	0.2	1.1	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
TerC	PF03741.11	gi|408404885|ref|YP_006862868.1|	-	0.03	13.7	0.2	0.034	13.5	0.2	1.0	1	0	0	1	1	1	0	Integral	membrane	protein	TerC	family
Bundlin	PF05307.6	gi|408404885|ref|YP_006862868.1|	-	0.04	13.7	0.5	0.061	13.2	0.3	1.3	1	1	0	1	1	1	0	Bundlin
Mycobact_memb	PF05423.8	gi|408404885|ref|YP_006862868.1|	-	0.084	12.6	0.1	0.1	12.3	0.0	1.1	1	0	0	1	1	1	0	Mycobacterium	membrane	protein
DUF2537	PF10801.3	gi|408404886|ref|YP_006862869.1|	-	0.082	13.0	0.1	0.12	12.4	0.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2537)
HTH_11	PF08279.7	gi|408404887|ref|YP_006862870.1|	-	0.00044	19.8	0.0	0.00074	19.1	0.0	1.4	1	0	0	1	1	1	1	HTH	domain
HTH_Mga	PF08280.6	gi|408404887|ref|YP_006862870.1|	-	0.00083	19.0	0.0	0.0015	18.2	0.0	1.3	1	0	0	1	1	1	1	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
HTH_23	PF13384.1	gi|408404887|ref|YP_006862870.1|	-	0.004	16.7	0.0	0.016	14.8	0.0	1.9	1	1	1	2	2	2	1	Homeodomain-like	domain
HTH_38	PF13936.1	gi|408404887|ref|YP_006862870.1|	-	0.011	15.2	0.0	0.033	13.7	0.0	1.9	1	1	0	1	1	1	0	Helix-turn-helix	domain
FUR	PF01475.14	gi|408404887|ref|YP_006862870.1|	-	0.042	13.7	0.1	0.089	12.7	0.1	1.6	1	1	0	1	1	1	0	Ferric	uptake	regulator	family
HTH_IclR	PF09339.5	gi|408404887|ref|YP_006862870.1|	-	0.053	13.1	0.0	0.54	9.8	0.0	2.1	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
HTH_24	PF13412.1	gi|408404887|ref|YP_006862870.1|	-	0.057	12.8	0.0	0.12	11.8	0.0	1.6	1	1	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
Sigma70_r4_2	PF08281.7	gi|408404887|ref|YP_006862870.1|	-	0.059	12.8	0.0	0.12	11.8	0.0	1.5	1	0	0	1	1	1	0	Sigma-70,	region	4
Rrf2	PF02082.15	gi|408404887|ref|YP_006862870.1|	-	0.091	12.8	0.0	0.12	12.4	0.0	1.2	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_45	PF14947.1	gi|408404887|ref|YP_006862870.1|	-	0.11	12.3	0.3	0.19	11.5	0.0	1.6	2	1	0	2	2	2	0	Winged	helix-turn-helix
B-block_TFIIIC	PF04182.7	gi|408404887|ref|YP_006862870.1|	-	0.12	12.1	0.0	0.18	11.6	0.0	1.3	1	0	0	1	1	1	0	B-block	binding	subunit	of	TFIIIC
NADH_B2	PF14813.1	gi|408404888|ref|YP_006862871.1|	-	0.068	12.8	0.0	0.075	12.7	0.0	1.1	1	0	0	1	1	1	0	NADH	dehydrogenase	1	beta	subcomplex	subunit	2
DUF192	PF02643.10	gi|408404889|ref|YP_006862872.1|	-	1.7e-18	66.2	0.0	2.1e-18	65.9	0.0	1.1	1	0	0	1	1	1	1	Uncharacterized	ACR,	COG1430
Pyridox_oxidase	PF01243.15	gi|408404890|ref|YP_006862873.1|	-	1.1e-13	51.0	0.0	1.4e-13	50.6	0.0	1.2	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Pyridox_ox_2	PF12900.2	gi|408404890|ref|YP_006862873.1|	-	4.8e-07	29.6	0.0	5.8e-07	29.4	0.0	1.1	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
AMP-binding	PF00501.23	gi|408404891|ref|YP_006862874.1|	-	2e-100	336.1	0.1	2.4e-100	335.8	0.0	1.1	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.1	gi|408404891|ref|YP_006862874.1|	-	2.5e-21	76.3	0.1	2.8e-20	73.0	0.0	2.4	2	0	0	2	2	2	1	AMP-binding	enzyme	C-terminal	domain
HTH_45	PF14947.1	gi|408404892|ref|YP_006862875.1|	-	6.9e-22	77.0	1.5	7.7e-22	76.9	1.0	1.0	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF4364	PF14277.1	gi|408404892|ref|YP_006862875.1|	-	0.00021	20.9	0.4	0.00022	20.8	0.3	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4364)
HTH_24	PF13412.1	gi|408404892|ref|YP_006862875.1|	-	0.0012	18.2	0.1	0.0018	17.6	0.1	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_27	PF13463.1	gi|408404892|ref|YP_006862875.1|	-	0.026	14.8	0.0	0.038	14.3	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
APC2	PF08672.6	gi|408404892|ref|YP_006862875.1|	-	0.034	14.3	0.6	0.088	13.0	0.1	2.0	2	1	0	2	2	2	0	Anaphase	promoting	complex	(APC)	subunit	2
TrmB	PF01978.14	gi|408404892|ref|YP_006862875.1|	-	0.064	12.9	0.1	0.085	12.5	0.0	1.2	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
DUF4423	PF14394.1	gi|408404892|ref|YP_006862875.1|	-	0.076	12.5	0.0	0.084	12.4	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
DUF2250	PF10007.4	gi|408404892|ref|YP_006862875.1|	-	0.1	12.4	0.1	0.12	12.2	0.1	1.2	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
PRC	PF05239.11	gi|408404893|ref|YP_006862876.1|	-	0.0032	17.3	3.0	0.0075	16.1	2.0	1.6	1	0	0	1	1	1	1	PRC-barrel	domain
Ribosomal_L29	PF00831.18	gi|408404893|ref|YP_006862876.1|	-	0.0036	16.9	1.8	0.13	11.9	0.1	2.7	1	1	1	2	2	2	1	Ribosomal	L29	protein
DUF724	PF05266.9	gi|408404893|ref|YP_006862876.1|	-	0.0077	15.8	6.4	0.0077	15.8	4.4	1.8	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF724)
Cut8_C	PF08559.5	gi|408404893|ref|YP_006862876.1|	-	0.25	11.1	2.5	9.1	6.1	0.4	2.2	2	0	0	2	2	2	0	Cut8	six-helix	bundle
DUF1840	PF08895.6	gi|408404893|ref|YP_006862876.1|	-	2.6	8.0	7.9	0.26	11.3	1.9	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1840)
GvpG	PF05120.7	gi|408404893|ref|YP_006862876.1|	-	2.7	7.8	6.6	0.92	9.3	1.5	2.4	1	1	1	3	3	3	0	Gas	vesicle	protein	G
Thy1	PF02511.10	gi|408404894|ref|YP_006862877.1|	-	2.2e-36	124.9	1.0	3.5e-19	68.9	1.4	2.5	2	1	0	2	2	2	2	Thymidylate	synthase	complementing	protein
DUF3349	PF11829.3	gi|408404894|ref|YP_006862877.1|	-	0.055	13.9	0.0	0.15	12.4	0.0	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3349)
DUF2834	PF11196.3	gi|408404895|ref|YP_006862878.1|	-	0.088	12.9	0.9	0.18	12.0	0.6	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2834)
Dynamin_M	PF01031.15	gi|408404896|ref|YP_006862879.1|	-	0.027	13.2	0.2	0.045	12.5	0.1	1.3	1	0	0	1	1	1	0	Dynamin	central	region
DUF2365	PF10157.4	gi|408404896|ref|YP_006862879.1|	-	0.068	13.0	0.2	4.4	7.1	0.0	2.1	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2365)
Wx5_PLAF3D7	PF09688.5	gi|408404896|ref|YP_006862879.1|	-	0.25	11.3	2.4	0.76	9.7	1.3	1.9	1	1	1	2	2	2	0	Protein	of	unknown	function	(Wx5_PLAF3D7)
Fer4	PF00037.22	gi|408404897|ref|YP_006862880.1|	-	9.6e-09	34.4	22.5	5.3e-05	22.6	1.9	3.1	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_7	PF12838.2	gi|408404897|ref|YP_006862880.1|	-	3.7e-07	30.4	8.5	3.7e-07	30.4	5.9	2.0	2	0	0	2	2	1	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|408404897|ref|YP_006862880.1|	-	5.8e-07	29.6	7.4	5.8e-07	29.6	5.1	2.1	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|408404897|ref|YP_006862880.1|	-	1.5e-05	24.7	10.0	1.5e-05	24.7	7.0	2.2	2	1	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_21	PF14697.1	gi|408404897|ref|YP_006862880.1|	-	4.9e-05	23.0	8.5	4.9e-05	23.0	5.9	1.9	2	1	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_8	PF13183.1	gi|408404897|ref|YP_006862880.1|	-	5.1e-05	23.2	6.4	5.1e-05	23.2	4.5	2.1	2	1	1	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_18	PF13746.1	gi|408404897|ref|YP_006862880.1|	-	0.00069	19.9	7.6	0.054	13.9	0.5	2.7	3	0	0	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.2	gi|408404897|ref|YP_006862880.1|	-	0.0026	17.5	19.7	0.065	13.1	1.8	3.0	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_6	PF12837.2	gi|408404897|ref|YP_006862880.1|	-	0.0043	16.8	24.1	0.0076	16.0	3.1	3.1	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_4	PF12800.2	gi|408404897|ref|YP_006862880.1|	-	0.1	12.9	17.1	0.092	13.1	2.1	3.1	3	1	0	3	3	3	0	4Fe-4S	binding	domain
Fer4_3	PF12798.2	gi|408404897|ref|YP_006862880.1|	-	0.15	12.6	24.1	0.17	12.5	2.1	2.9	3	0	0	3	3	2	0	4Fe-4S	binding	domain
Fer4_15	PF13459.1	gi|408404897|ref|YP_006862880.1|	-	0.38	11.3	12.3	2.2	8.8	0.6	2.8	3	0	0	3	3	3	0	4Fe-4S	single	cluster	domain
Fer4_17	PF13534.1	gi|408404897|ref|YP_006862880.1|	-	1.1	9.6	14.0	3	8.2	0.3	2.9	2	1	1	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_13	PF13370.1	gi|408404897|ref|YP_006862880.1|	-	7.7	6.9	17.1	1.6	9.1	0.8	2.7	3	0	0	3	3	2	0	4Fe-4S	single	cluster	domain
Fer4_16	PF13484.1	gi|408404897|ref|YP_006862880.1|	-	9.9	6.9	16.7	1.8	9.3	2.1	2.9	2	1	2	4	4	3	0	4Fe-4S	double	cluster	binding	domain
Glyco_tranf_2_3	PF13641.1	gi|408404898|ref|YP_006862881.1|	-	3.6e-35	121.8	0.1	7.1e-35	120.8	0.0	1.4	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_trans_2_3	PF13632.1	gi|408404898|ref|YP_006862881.1|	-	2.5e-20	73.0	1.4	2.5e-20	73.0	1.0	2.3	2	0	0	2	2	2	1	Glycosyl	transferase	family	group	2
Glycos_transf_2	PF00535.21	gi|408404898|ref|YP_006862881.1|	-	7.4e-17	61.5	0.0	2e-16	60.1	0.0	1.7	2	0	0	2	2	2	1	Glycosyl	transferase	family	2
Glyco_transf_21	PF13506.1	gi|408404898|ref|YP_006862881.1|	-	7.1e-11	41.6	0.1	1.6e-10	40.5	0.1	1.6	1	0	0	1	1	1	1	Glycosyl	transferase	family	21
Cellulose_synt	PF03552.9	gi|408404898|ref|YP_006862881.1|	-	0.00077	17.8	0.6	0.00077	17.8	0.4	1.6	2	0	0	2	2	2	1	Cellulose	synthase
Glyco_tranf_2_2	PF10111.4	gi|408404898|ref|YP_006862881.1|	-	0.0033	16.5	0.1	0.0074	15.3	0.0	1.5	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
CtIP_N	PF10482.4	gi|408404899|ref|YP_006862882.1|	-	0.037	13.8	0.2	0.12	12.1	0.0	1.9	2	0	0	2	2	2	0	Tumour-suppressor	protein	CtIP	N-terminal	domain
AKAP7_NLS	PF10469.4	gi|408404900|ref|YP_006862883.1|	-	0.071	12.8	0.5	0.46	10.1	0.0	2.3	3	0	0	3	3	3	0	AKAP7	2'5'	RNA	ligase-like	domain
AAA_22	PF13401.1	gi|408404900|ref|YP_006862883.1|	-	0.074	13.1	0.9	2.8	8.1	0.0	3.1	3	0	0	3	3	3	0	AAA	domain
zf-Sec23_Sec24	PF04810.10	gi|408404901|ref|YP_006862884.1|	-	0.024	14.2	0.1	0.052	13.1	0.1	1.6	1	0	0	1	1	1	0	Sec23/Sec24	zinc	finger
AphA_like	PF14557.1	gi|408404904|ref|YP_006862887.1|	-	0.00043	19.8	0.2	0.00049	19.6	0.1	1.0	1	0	0	1	1	1	1	Putative	AphA-like	transcriptional	regulator
NKWYS	PF10364.4	gi|408404904|ref|YP_006862887.1|	-	0.011	15.4	0.0	0.012	15.3	0.0	1.2	1	0	0	1	1	1	0	Putative	capsular	polysaccharide	synthesis	protein
Apolipoprotein	PF01442.13	gi|408404904|ref|YP_006862887.1|	-	0.012	15.1	0.7	0.012	15.1	0.5	1.1	1	0	0	1	1	1	0	Apolipoprotein	A1/A4/E	domain
Phasin	PF05597.6	gi|408404904|ref|YP_006862887.1|	-	0.013	15.2	0.4	0.015	15.0	0.3	1.2	1	0	0	1	1	1	0	Poly(hydroxyalcanoate)	granule	associated	protein	(phasin)
ISG65-75	PF11727.3	gi|408404904|ref|YP_006862887.1|	-	0.019	14.0	0.5	0.02	13.9	0.3	1.0	1	0	0	1	1	1	0	Invariant	surface	glycoprotein
AF0941-like	PF14591.1	gi|408404904|ref|YP_006862887.1|	-	0.027	14.5	0.2	0.032	14.2	0.1	1.1	1	0	0	1	1	1	0	AF0941-like
Phage_int_SAM_5	PF13102.1	gi|408404904|ref|YP_006862887.1|	-	0.065	13.2	0.5	0.068	13.1	0.4	1.0	1	0	0	1	1	1	0	Phage	integrase	SAM-like	domain
SbcD_C	PF12320.3	gi|408404904|ref|YP_006862887.1|	-	0.072	13.1	0.2	0.081	12.9	0.2	1.1	1	0	0	1	1	1	0	Type	5	capsule	protein	repressor	C-terminal	domain
DUF4546	PF15079.1	gi|408404904|ref|YP_006862887.1|	-	0.072	12.2	0.7	0.1	11.7	0.5	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4546)
DUF3701	PF12482.3	gi|408404904|ref|YP_006862887.1|	-	0.1	12.3	0.0	0.17	11.6	0.0	1.4	1	0	0	1	1	1	0	Phage	integrase	protein
DUF2291	PF10054.4	gi|408404904|ref|YP_006862887.1|	-	0.11	11.7	0.1	0.12	11.5	0.1	1.1	1	0	0	1	1	1	0	Predicted	periplasmic	lipoprotein	(DUF2291)
Gluconate_2-dh3	PF13618.1	gi|408404904|ref|YP_006862887.1|	-	0.13	12.4	0.3	0.14	12.3	0.2	1.1	1	0	0	1	1	1	0	Gluconate	2-dehydrogenase	subunit	3
Glyco_transf_90	PF05686.7	gi|408404905|ref|YP_006862888.1|	-	0.055	12.1	0.1	0.068	11.8	0.1	1.1	1	0	0	1	1	1	0	Glycosyl	transferase	family	90
ALAD	PF00490.16	gi|408404906|ref|YP_006862889.1|	-	4.6e-137	456.2	0.2	5.2e-137	456.0	0.1	1.0	1	0	0	1	1	1	1	Delta-aminolevulinic	acid	dehydratase
DUF2070	PF09843.4	gi|408404906|ref|YP_006862889.1|	-	0.055	12.9	0.0	0.094	12.1	0.0	1.4	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2070)
GlutR_N	PF05201.10	gi|408404907|ref|YP_006862890.1|	-	6.2e-39	133.0	0.0	1.6e-38	131.6	0.0	1.7	1	0	0	1	1	1	1	Glutamyl-tRNAGlu	reductase,	N-terminal	domain
Shikimate_DH	PF01488.15	gi|408404907|ref|YP_006862890.1|	-	4.4e-25	88.3	0.2	9.2e-25	87.3	0.1	1.6	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
GlutR_dimer	PF00745.15	gi|408404907|ref|YP_006862890.1|	-	5e-20	71.3	0.8	9.3e-20	70.4	0.6	1.5	1	0	0	1	1	1	1	Glutamyl-tRNAGlu	reductase,	dimerisation	domain
F420_oxidored	PF03807.12	gi|408404907|ref|YP_006862890.1|	-	5.2e-05	23.6	0.0	0.00023	21.5	0.0	2.2	2	0	0	2	2	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
2-Hacid_dh_C	PF02826.14	gi|408404907|ref|YP_006862890.1|	-	7.1e-05	22.0	0.0	0.00012	21.2	0.0	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
NAD_binding_10	PF13460.1	gi|408404907|ref|YP_006862890.1|	-	0.0031	17.5	0.0	0.0075	16.2	0.0	1.7	1	1	0	1	1	1	1	NADH(P)-binding
NAD_binding_2	PF03446.10	gi|408404907|ref|YP_006862890.1|	-	0.0059	16.4	0.5	0.029	14.2	0.0	2.1	1	1	1	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
TrkA_N	PF02254.13	gi|408404907|ref|YP_006862890.1|	-	0.022	14.7	0.0	0.93	9.5	0.0	2.6	2	0	0	2	2	2	0	TrkA-N	domain
DUF3530	PF12048.3	gi|408404907|ref|YP_006862890.1|	-	0.051	12.5	0.0	0.081	11.8	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3530)
NAD_binding_7	PF13241.1	gi|408404907|ref|YP_006862890.1|	-	0.097	12.9	0.1	0.31	11.3	0.0	1.9	2	0	0	2	2	2	0	Putative	NAD(P)-binding
Cmyb_C	PF09316.5	gi|408404907|ref|YP_006862890.1|	-	0.14	11.8	0.5	6.7	6.3	0.0	2.5	2	0	0	2	2	2	0	C-myb,	C-terminal
Hrs_helical	PF12210.3	gi|408404907|ref|YP_006862890.1|	-	0.35	11.1	3.7	6.4	7.1	0.2	2.6	1	1	1	2	2	2	0	Hepatocyte	growth	factor-regulated	tyrosine	kinase	substrate
NAD_binding_7	PF13241.1	gi|408404908|ref|YP_006862891.1|	-	4.7e-20	71.7	0.6	9.8e-20	70.7	0.1	1.7	2	0	0	2	2	2	1	Putative	NAD(P)-binding
TrkA_N	PF02254.13	gi|408404908|ref|YP_006862891.1|	-	8.1e-06	25.8	1.1	1.5e-05	24.9	0.3	1.9	1	1	1	2	2	2	1	TrkA-N	domain
Shikimate_DH	PF01488.15	gi|408404908|ref|YP_006862891.1|	-	0.00058	19.9	3.4	0.0012	18.9	0.8	2.2	1	1	1	2	2	2	1	Shikimate	/	quinate	5-dehydrogenase
Sirohm_synth_M	PF14824.1	gi|408404908|ref|YP_006862891.1|	-	0.0092	14.9	0.0	0.028	13.3	0.0	1.8	1	0	0	1	1	1	1	Sirohaem	biosynthesis	protein	central
DUF4363	PF14276.1	gi|408404908|ref|YP_006862891.1|	-	0.067	12.9	0.4	0.13	11.9	0.3	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4363)
Pyr_redox_3	PF13738.1	gi|408404908|ref|YP_006862891.1|	-	0.13	12.2	0.1	4	7.4	0.0	2.1	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_2	PF07992.9	gi|408404908|ref|YP_006862891.1|	-	0.14	12.0	0.5	0.28	11.0	0.1	1.5	1	1	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
Spt5-NGN	PF03439.8	gi|408404909|ref|YP_006862892.1|	-	3.4e-21	74.7	0.0	5.4e-21	74.1	0.0	1.3	1	0	0	1	1	1	1	Early	transcription	elongation	factor	of	RNA	pol	II,	NGN	section
KOW	PF00467.24	gi|408404909|ref|YP_006862892.1|	-	5.3e-06	25.9	0.0	1.4e-05	24.6	0.0	1.7	1	0	0	1	1	1	1	KOW	motif
NusG	PF02357.14	gi|408404909|ref|YP_006862892.1|	-	0.0051	17.0	0.0	0.015	15.5	0.0	1.8	1	1	0	1	1	1	1	Transcription	termination	factor	nusG
Etmic-2	PF06670.6	gi|408404909|ref|YP_006862892.1|	-	0.13	10.9	3.2	0.24	10.0	2.2	1.4	1	0	0	1	1	1	0	Microneme	protein	Etmic-2
DUF2360	PF10152.4	gi|408404909|ref|YP_006862892.1|	-	0.28	11.4	2.8	0.43	10.8	2.0	1.4	1	0	0	1	1	1	0	Predicted	coiled-coil	domain-containing	protein	(DUF2360)
tRNA_deacylase	PF04414.7	gi|408404911|ref|YP_006862894.1|	-	1.6e-61	207.1	0.0	1.8e-61	206.9	0.0	1.0	1	0	0	1	1	1	1	D-aminoacyl-tRNA	deacylase
DNA_binding_1	PF01035.15	gi|408404912|ref|YP_006862895.1|	-	1.1e-31	108.4	0.0	1.3e-31	108.1	0.0	1.1	1	0	0	1	1	1	1	6-O-methylguanine	DNA	methyltransferase,	DNA	binding	domain
Ribosomal_L19e	PF01280.15	gi|408404913|ref|YP_006862896.1|	-	1.3e-39	135.3	6.9	1.5e-39	135.1	4.7	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L19e
HTH_12	PF08461.5	gi|408404913|ref|YP_006862896.1|	-	0.0061	16.2	0.1	0.017	14.8	0.1	1.8	1	0	0	1	1	1	1	Ribonuclease	R	winged-helix	domain
Ribosomal_L32e	PF01655.13	gi|408404914|ref|YP_006862897.1|	-	1.1e-42	144.5	1.5	1.4e-42	144.2	1.1	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L32
GvpD	PF07088.6	gi|408404916|ref|YP_006862899.1|	-	1.8e-26	92.5	0.2	2.4e-21	75.6	0.0	2.6	1	1	1	2	2	2	2	GvpD	gas	vesicle	protein
KaiC	PF06745.8	gi|408404916|ref|YP_006862899.1|	-	3.3e-13	49.3	0.1	1.5e-11	43.8	0.0	2.8	2	1	0	2	2	2	1	KaiC
AAA_22	PF13401.1	gi|408404916|ref|YP_006862899.1|	-	2.5e-07	30.8	0.0	4.9e-07	29.9	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
NACHT	PF05729.7	gi|408404916|ref|YP_006862899.1|	-	5e-05	23.0	0.0	0.001	18.7	0.0	2.6	2	1	1	3	3	3	1	NACHT	domain
AAA_14	PF13173.1	gi|408404916|ref|YP_006862899.1|	-	8.8e-05	22.4	1.1	0.0058	16.5	0.3	2.8	2	1	0	2	2	1	1	AAA	domain
AAA_25	PF13481.1	gi|408404916|ref|YP_006862899.1|	-	0.00012	21.5	0.0	0.00037	19.9	0.0	1.8	1	1	0	1	1	1	1	AAA	domain
AAA	PF00004.24	gi|408404916|ref|YP_006862899.1|	-	0.00059	20.0	0.0	0.0022	18.2	0.0	1.9	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Arch_ATPase	PF01637.13	gi|408404916|ref|YP_006862899.1|	-	0.0019	17.9	0.0	0.0045	16.7	0.0	1.7	1	0	0	1	1	1	1	Archaeal	ATPase
AAA_5	PF07728.9	gi|408404916|ref|YP_006862899.1|	-	0.0035	17.0	0.0	0.0063	16.2	0.0	1.4	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
AAA_16	PF13191.1	gi|408404916|ref|YP_006862899.1|	-	0.0049	16.8	0.0	0.011	15.7	0.0	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
DUF2075	PF09848.4	gi|408404916|ref|YP_006862899.1|	-	0.005	15.8	0.0	0.012	14.6	0.0	1.6	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2075)
TIP49	PF06068.8	gi|408404916|ref|YP_006862899.1|	-	0.0065	15.2	0.0	0.011	14.4	0.0	1.2	1	0	0	1	1	1	1	TIP49	C-terminus
T2SE	PF00437.15	gi|408404916|ref|YP_006862899.1|	-	0.015	14.2	0.0	0.023	13.5	0.0	1.3	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
Pox_A32	PF04665.7	gi|408404916|ref|YP_006862899.1|	-	0.022	14.0	0.5	0.043	13.1	0.3	1.4	1	0	0	1	1	1	0	Poxvirus	A32	protein
Phosphodiest	PF01663.17	gi|408404916|ref|YP_006862899.1|	-	0.03	13.6	0.0	0.046	13.0	0.0	1.2	1	0	0	1	1	1	0	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
NB-ARC	PF00931.17	gi|408404916|ref|YP_006862899.1|	-	0.033	13.0	0.0	0.049	12.4	0.0	1.4	1	0	0	1	1	1	0	NB-ARC	domain
AAA_18	PF13238.1	gi|408404916|ref|YP_006862899.1|	-	0.035	14.4	0.0	0.15	12.3	0.0	2.1	1	1	0	1	1	1	0	AAA	domain
AAA_30	PF13604.1	gi|408404916|ref|YP_006862899.1|	-	0.048	13.2	0.0	0.093	12.3	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
Sigma54_activat	PF00158.21	gi|408404916|ref|YP_006862899.1|	-	0.049	13.0	0.0	0.088	12.2	0.0	1.3	1	0	0	1	1	1	0	Sigma-54	interaction	domain
AAA_19	PF13245.1	gi|408404916|ref|YP_006862899.1|	-	0.082	12.6	0.0	0.18	11.5	0.0	1.5	1	0	0	1	1	1	0	Part	of	AAA	domain
Viral_helicase1	PF01443.13	gi|408404916|ref|YP_006862899.1|	-	0.086	12.3	0.0	0.13	11.7	0.0	1.3	1	0	0	1	1	1	0	Viral	(Superfamily	1)	RNA	helicase
cobW	PF02492.14	gi|408404916|ref|YP_006862899.1|	-	0.14	11.5	0.3	0.76	9.2	0.1	2.0	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
IstB_IS21	PF01695.12	gi|408404916|ref|YP_006862899.1|	-	0.14	11.5	0.0	0.86	8.9	0.0	2.0	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
ResIII	PF04851.10	gi|408404916|ref|YP_006862899.1|	-	0.15	11.8	0.0	0.25	11.1	0.0	1.4	1	0	0	1	1	1	0	Type	III	restriction	enzyme,	res	subunit
HTH_45	PF14947.1	gi|408404917|ref|YP_006862900.1|	-	7e-21	73.8	0.6	8.3e-21	73.5	0.4	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF4364	PF14277.1	gi|408404917|ref|YP_006862900.1|	-	0.0001	21.9	0.1	0.00013	21.6	0.1	1.3	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4364)
DUF1495	PF07381.6	gi|408404917|ref|YP_006862900.1|	-	0.00012	21.6	0.1	0.0048	16.5	0.0	2.1	1	1	1	2	2	2	1	Winged	helix	DNA-binding	domain	(DUF1495)
DUF3116	PF11313.3	gi|408404917|ref|YP_006862900.1|	-	0.0054	16.3	0.5	0.1	12.1	0.4	2.0	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF3116)
HTH_27	PF13463.1	gi|408404917|ref|YP_006862900.1|	-	0.019	15.2	0.0	0.028	14.7	0.0	1.4	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain
TrmB	PF01978.14	gi|408404917|ref|YP_006862900.1|	-	0.049	13.3	0.1	0.083	12.6	0.1	1.4	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_34	PF13601.1	gi|408404917|ref|YP_006862900.1|	-	0.055	13.5	0.0	0.068	13.2	0.0	1.4	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain
DUF2250	PF10007.4	gi|408404917|ref|YP_006862900.1|	-	0.08	12.8	0.5	0.2	11.5	0.3	1.8	1	1	1	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
Mrr_N	PF14338.1	gi|408404917|ref|YP_006862900.1|	-	0.12	12.5	0.0	0.16	12.0	0.0	1.3	1	0	0	1	1	1	0	Mrr	N-terminal	domain
HTH_45	PF14947.1	gi|408404918|ref|YP_006862901.1|	-	4.5e-16	58.4	0.4	5.1e-16	58.2	0.3	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
TrmB	PF01978.14	gi|408404918|ref|YP_006862901.1|	-	0.00031	20.3	0.0	0.00047	19.8	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Replic_Relax	PF13814.1	gi|408404918|ref|YP_006862901.1|	-	0.061	13.1	0.0	0.074	12.9	0.0	1.1	1	0	0	1	1	1	0	Replication-relaxation
DUF2317	PF10079.4	gi|408404919|ref|YP_006862902.1|	-	0.0018	16.9	0.0	0.0054	15.4	0.0	1.7	2	0	0	2	2	2	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2317)
PilJ	PF13675.1	gi|408404919|ref|YP_006862902.1|	-	0.32	11.3	2.6	10	6.4	0.2	2.8	3	0	0	3	3	3	0	Type	IV	pili	methyl-accepting	chemotaxis	transducer	N-term
PIG-L	PF02585.12	gi|408404920|ref|YP_006862903.1|	-	1.9e-24	86.5	0.1	2.8e-24	86.0	0.1	1.2	1	0	0	1	1	1	1	GlcNAc-PI	de-N-acetylase
SNAP	PF14938.1	gi|408404921|ref|YP_006862904.1|	-	1.1e-05	24.6	1.6	1.6e-05	24.2	1.1	1.1	1	0	0	1	1	1	1	Soluble	NSF	attachment	protein,	SNAP
TPR_12	PF13424.1	gi|408404921|ref|YP_006862904.1|	-	0.039	13.9	1.4	5.5	7.0	0.1	2.5	2	1	0	2	2	2	0	Tetratricopeptide	repeat
MIT	PF04212.13	gi|408404921|ref|YP_006862904.1|	-	0.071	13.0	0.7	0.4	10.5	0.0	2.5	2	1	0	2	2	2	0	MIT	(microtubule	interacting	and	transport)	domain
Glycos_transf_1	PF00534.15	gi|408404922|ref|YP_006862905.1|	-	4.3e-33	114.1	0.0	7.2e-33	113.4	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
DUF3492	PF11997.3	gi|408404922|ref|YP_006862905.1|	-	1.3e-32	113.4	0.0	1.9e-32	112.8	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF3492)
Glyco_trans_1_4	PF13692.1	gi|408404922|ref|YP_006862905.1|	-	4.1e-19	69.0	0.0	9.5e-19	67.8	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.1	gi|408404922|ref|YP_006862905.1|	-	1.8e-10	40.9	0.0	4.8e-10	39.5	0.0	1.7	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.1	gi|408404922|ref|YP_006862905.1|	-	5.9e-10	39.1	0.0	1.1e-09	38.2	0.0	1.4	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.1	gi|408404922|ref|YP_006862905.1|	-	2.8e-07	30.8	0.0	4.9e-07	30.0	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	4-like	domain
Epimerase	PF01370.16	gi|408404923|ref|YP_006862906.1|	-	2.8e-63	213.5	0.3	3.4e-63	213.2	0.2	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
Polysacc_synt_2	PF02719.10	gi|408404923|ref|YP_006862906.1|	-	1.9e-23	82.8	0.1	4.5e-23	81.5	0.0	1.5	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
3Beta_HSD	PF01073.14	gi|408404923|ref|YP_006862906.1|	-	2.8e-23	82.0	0.4	3.6e-23	81.6	0.2	1.1	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
NAD_binding_4	PF07993.7	gi|408404923|ref|YP_006862906.1|	-	2.9e-14	52.5	0.3	1.7e-12	46.7	0.2	2.2	1	1	0	1	1	1	1	Male	sterility	protein
RmlD_sub_bind	PF04321.12	gi|408404923|ref|YP_006862906.1|	-	9.4e-13	47.6	0.0	1.2e-12	47.2	0.0	1.1	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
NAD_binding_10	PF13460.1	gi|408404923|ref|YP_006862906.1|	-	2.9e-10	40.4	0.0	4.7e-10	39.7	0.0	1.3	1	0	0	1	1	1	1	NADH(P)-binding
adh_short	PF00106.20	gi|408404923|ref|YP_006862906.1|	-	6.9e-09	35.8	1.1	1.4e-08	34.8	0.8	1.6	1	1	0	1	1	1	1	short	chain	dehydrogenase
NmrA	PF05368.8	gi|408404923|ref|YP_006862906.1|	-	5.6e-07	29.0	0.0	9.2e-07	28.3	0.0	1.3	1	1	0	1	1	1	1	NmrA-like	family
KR	PF08659.5	gi|408404923|ref|YP_006862906.1|	-	0.0048	16.5	1.2	0.054	13.1	0.8	2.6	1	1	0	1	1	1	1	KR	domain
Epimerase_Csub	PF13950.1	gi|408404923|ref|YP_006862906.1|	-	0.019	14.9	0.0	0.043	13.7	0.0	1.5	1	0	0	1	1	1	0	UDP-glucose	4-epimerase	C-term	subunit
ATPgrasp_Ter	PF15632.1	gi|408404925|ref|YP_006862908.1|	-	4.2e-44	150.6	0.0	1.7e-43	148.6	0.0	1.7	1	1	0	1	1	1	1	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
ATP-grasp_4	PF13535.1	gi|408404925|ref|YP_006862908.1|	-	9.3e-21	74.3	0.0	1.4e-20	73.7	0.0	1.3	1	0	0	1	1	1	1	ATP-grasp	domain
ATP-grasp_3	PF02655.9	gi|408404925|ref|YP_006862908.1|	-	1.7e-14	53.9	0.0	2.4e-14	53.4	0.0	1.2	1	0	0	1	1	1	1	ATP-grasp	domain
Dala_Dala_lig_C	PF07478.8	gi|408404925|ref|YP_006862908.1|	-	2.3e-05	23.8	0.0	3.3e-05	23.3	0.0	1.2	1	0	0	1	1	1	1	D-ala	D-ala	ligase	C-terminus
CPSase_L_D2	PF02786.12	gi|408404925|ref|YP_006862908.1|	-	4.3e-05	22.9	0.0	0.023	13.9	0.0	2.3	2	0	0	2	2	2	2	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
RimK	PF08443.6	gi|408404925|ref|YP_006862908.1|	-	0.085	12.3	0.0	0.14	11.6	0.0	1.5	1	0	0	1	1	1	0	RimK-like	ATP-grasp	domain
Metallophos	PF00149.23	gi|408404926|ref|YP_006862909.1|	-	3.2e-22	78.9	0.0	4.2e-22	78.5	0.0	1.2	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.2	gi|408404926|ref|YP_006862909.1|	-	1.9e-07	31.0	0.0	2.5e-07	30.6	0.0	1.2	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
TFIIB	PF00382.14	gi|408404927|ref|YP_006862910.1|	-	6.3e-28	96.3	2.8	9e-15	54.2	0.1	2.2	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.7	gi|408404927|ref|YP_006862910.1|	-	0.00069	18.8	0.1	0.0012	18.0	0.1	1.5	1	0	0	1	1	1	1	TFIIB	zinc-binding
Cyclin_N	PF00134.18	gi|408404927|ref|YP_006862910.1|	-	0.0015	18.0	0.9	0.014	14.9	0.1	2.1	2	0	0	2	2	2	1	Cyclin,	N-terminal	domain
DDT	PF02791.12	gi|408404927|ref|YP_006862910.1|	-	0.017	14.8	0.0	0.037	13.8	0.0	1.5	1	0	0	1	1	1	0	DDT	domain
GerE	PF00196.14	gi|408404927|ref|YP_006862910.1|	-	0.017	14.4	0.0	1.3	8.3	0.0	2.7	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	luxR	family
HTH_Mga	PF08280.6	gi|408404927|ref|YP_006862910.1|	-	0.12	12.1	0.5	1.1	9.1	0.1	2.5	2	0	0	2	2	2	0	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
Glyco_tranf_2_3	PF13641.1	gi|408404928|ref|YP_006862911.1|	-	4e-13	49.6	0.0	7.7e-13	48.7	0.0	1.4	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_trans_2_3	PF13632.1	gi|408404928|ref|YP_006862911.1|	-	6.4e-11	42.3	2.9	1.6e-10	41.0	1.4	2.2	2	1	0	2	2	2	1	Glycosyl	transferase	family	group	2
Fringe	PF02434.11	gi|408404928|ref|YP_006862911.1|	-	0.0021	17.3	0.0	0.0035	16.5	0.0	1.3	1	0	0	1	1	1	1	Fringe-like
Glycos_transf_2	PF00535.21	gi|408404928|ref|YP_006862911.1|	-	0.0063	16.2	0.0	0.011	15.4	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Lactamase_B_2	PF12706.2	gi|408404930|ref|YP_006862913.1|	-	5.7e-29	101.0	0.0	8.1e-29	100.5	0.0	1.2	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.22	gi|408404930|ref|YP_006862913.1|	-	2.2e-08	33.9	0.0	2e-07	30.8	0.0	2.2	2	1	0	2	2	2	1	Metallo-beta-lactamase	superfamily
Lactamase_B_4	PF13691.1	gi|408404930|ref|YP_006862913.1|	-	0.0051	16.2	0.0	0.013	14.9	0.0	1.6	1	0	0	1	1	1	1	tRNase	Z	endonuclease
Pribosyltran_N	PF13793.1	gi|408404931|ref|YP_006862914.1|	-	2.7e-29	101.2	0.5	1.2e-28	99.1	0.0	2.2	2	1	0	2	2	2	1	N-terminal	domain	of	ribose	phosphate	pyrophosphokinase
Pribosyl_synth	PF14572.1	gi|408404931|ref|YP_006862914.1|	-	4.7e-18	65.5	1.4	3.9e-17	62.6	0.2	2.3	2	0	0	2	2	2	1	Phosphoribosyl	synthetase-associated	domain
Pribosyltran	PF00156.22	gi|408404931|ref|YP_006862914.1|	-	7e-09	35.4	0.4	7e-09	35.4	0.3	2.4	3	0	0	3	3	3	1	Phosphoribosyl	transferase	domain
UPRTase	PF14681.1	gi|408404931|ref|YP_006862914.1|	-	6.6e-06	25.4	0.2	9e-06	25.0	0.1	1.3	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
Ribosomal_S5_C	PF03719.10	gi|408404931|ref|YP_006862914.1|	-	0.037	13.3	0.6	7.2	5.9	0.0	2.4	2	0	0	2	2	2	0	Ribosomal	protein	S5,	C-terminal	domain
DUF3426	PF11906.3	gi|408404932|ref|YP_006862915.1|	-	2.5e-06	27.2	0.6	0.043	13.4	0.0	2.8	3	0	0	3	3	3	2	Protein	of	unknown	function	(DUF3426)
DUF2393	PF09624.5	gi|408404932|ref|YP_006862915.1|	-	0.061	12.8	0.3	1.3	8.5	0.1	2.6	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2393)
DUF309	PF03745.9	gi|408404933|ref|YP_006862916.1|	-	1.1e-17	63.2	0.1	1.7e-17	62.6	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF309)
Imm22	PF15592.1	gi|408404933|ref|YP_006862916.1|	-	0.08	13.2	0.0	0.14	12.5	0.0	1.5	1	0	0	1	1	1	0	Immunity	protein	22
Cu-oxidase_3	PF07732.10	gi|408404934|ref|YP_006862917.1|	-	4.3e-28	97.4	4.1	3.3e-23	81.6	0.3	2.4	2	0	0	2	2	2	2	Multicopper	oxidase
Cu-oxidase_2	PF07731.9	gi|408404934|ref|YP_006862917.1|	-	3.1e-24	85.0	6.2	3.2e-11	42.9	0.1	3.2	3	0	0	3	3	3	3	Multicopper	oxidase
Cupredoxin_1	PF13473.1	gi|408404934|ref|YP_006862917.1|	-	7.3e-05	22.6	0.0	0.021	14.7	0.0	2.4	2	0	0	2	2	2	2	Cupredoxin-like	domain
CAT_RBD	PF03123.10	gi|408404934|ref|YP_006862917.1|	-	0.0052	16.4	0.0	0.011	15.4	0.0	1.4	1	0	0	1	1	1	1	CAT	RNA	binding	domain
Zip	PF02535.17	gi|408404935|ref|YP_006862918.1|	-	2.8e-06	26.5	13.5	2.8e-06	26.5	9.4	2.5	2	1	1	3	3	3	1	ZIP	Zinc	transporter
TraO	PF10626.4	gi|408404935|ref|YP_006862918.1|	-	0.038	13.3	0.2	0.061	12.7	0.1	1.3	1	0	0	1	1	1	0	Conjugative	transposon	protein	TraO
DUF217	PF02697.9	gi|408404936|ref|YP_006862919.1|	-	0.025	14.8	0.1	0.097	12.9	0.1	1.8	1	1	0	1	1	1	0	Uncharacterized	ACR,	COG1753
zinc_ribbon_5	PF13719.1	gi|408404939|ref|YP_006862922.1|	-	6e-05	22.5	1.8	0.021	14.4	0.1	2.3	2	0	0	2	2	2	2	zinc-ribbon	domain
zinc_ribbon_4	PF13717.1	gi|408404939|ref|YP_006862922.1|	-	0.00075	19.1	2.5	0.12	12.1	0.3	2.3	2	0	0	2	2	2	2	zinc-ribbon	domain
UPF0547	PF10571.4	gi|408404939|ref|YP_006862922.1|	-	0.033	13.8	6.2	1.4	8.6	0.6	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
Zn-ribbon_8	PF09723.5	gi|408404939|ref|YP_006862922.1|	-	0.037	13.9	1.2	0.069	13.1	0.8	1.5	1	1	0	1	1	1	0	Zinc	ribbon	domain
TFIIS_C	PF01096.13	gi|408404939|ref|YP_006862922.1|	-	0.088	12.4	3.7	1.7	8.3	0.6	2.2	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
OrfB_Zn_ribbon	PF07282.6	gi|408404939|ref|YP_006862922.1|	-	0.15	11.7	1.0	6.6	6.4	0.0	2.0	2	0	0	2	2	2	0	Putative	transposase	DNA-binding	domain
zf-RING_4	PF14570.1	gi|408404939|ref|YP_006862922.1|	-	0.86	9.2	3.7	1.3	8.6	2.6	1.2	1	0	0	1	1	1	0	RING/Ubox	like	zinc-binding	domain
PhnA_Zn_Ribbon	PF08274.7	gi|408404939|ref|YP_006862922.1|	-	1.9	8.3	6.4	4.8	7.0	0.8	2.3	2	0	0	2	2	2	0	PhnA	Zinc-Ribbon
Cu-oxidase_3	PF07732.10	gi|408404940|ref|YP_006862923.1|	-	1.7e-11	43.8	1.0	4.7e-11	42.4	0.7	1.8	1	1	0	1	1	1	1	Multicopper	oxidase
Cu-oxidase_2	PF07731.9	gi|408404940|ref|YP_006862923.1|	-	5.5e-07	29.1	3.3	0.016	14.6	0.2	3.3	3	0	0	3	3	3	3	Multicopper	oxidase
Cupredoxin_1	PF13473.1	gi|408404940|ref|YP_006862923.1|	-	6.3e-05	22.8	0.0	0.00016	21.5	0.0	1.6	1	0	0	1	1	1	1	Cupredoxin-like	domain
HTH_45	PF14947.1	gi|408404942|ref|YP_006862925.1|	-	5.7e-24	83.7	1.0	6.5e-24	83.5	0.7	1.0	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF4364	PF14277.1	gi|408404942|ref|YP_006862925.1|	-	3.3e-05	23.5	0.3	3.6e-05	23.4	0.2	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4364)
HTH_24	PF13412.1	gi|408404942|ref|YP_006862925.1|	-	0.0033	16.7	0.1	0.0044	16.3	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.14	gi|408404942|ref|YP_006862925.1|	-	0.0095	15.6	0.1	0.013	15.1	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
APC2	PF08672.6	gi|408404942|ref|YP_006862925.1|	-	0.018	15.3	0.1	0.026	14.7	0.1	1.4	1	0	0	1	1	1	0	Anaphase	promoting	complex	(APC)	subunit	2
HTH_27	PF13463.1	gi|408404942|ref|YP_006862925.1|	-	0.024	14.9	0.0	0.029	14.6	0.0	1.1	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
DUF4423	PF14394.1	gi|408404942|ref|YP_006862925.1|	-	0.048	13.2	0.1	0.053	13.0	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
PKD	PF00801.15	gi|408404943|ref|YP_006862926.1|	-	2.7e-06	27.0	0.8	7.3e-06	25.6	0.1	1.9	1	1	1	2	2	2	1	PKD	domain
SprB	PF13573.1	gi|408404943|ref|YP_006862926.1|	-	0.017	14.7	0.2	0.034	13.7	0.2	1.5	1	0	0	1	1	1	0	SprB	repeat
GTP_EFTU_D2	PF03144.20	gi|408404944|ref|YP_006862927.1|	-	1.9e-11	43.9	0.8	5e-11	42.5	0.2	2.0	2	0	0	2	2	2	1	Elongation	factor	Tu	domain	2
GTP_EFTU_D4	PF14578.1	gi|408404944|ref|YP_006862927.1|	-	0.00029	20.3	0.6	0.00093	18.7	0.2	2.0	2	0	0	2	2	2	1	Elongation	factor	Tu	domain	4
Hydant_A_N	PF05378.8	gi|408404944|ref|YP_006862927.1|	-	0.075	12.5	0.1	0.25	10.8	0.1	1.8	2	0	0	2	2	2	0	Hydantoinase/oxoprolinase	N-terminal	region
DUF99	PF01949.11	gi|408404945|ref|YP_006862928.1|	-	1.6e-57	193.6	0.0	1.9e-57	193.3	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF99
Polyketide_cyc	PF03364.15	gi|408404946|ref|YP_006862929.1|	-	5.9e-06	26.2	0.0	7.2e-06	26.0	0.0	1.1	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
Polyketide_cyc2	PF10604.4	gi|408404946|ref|YP_006862929.1|	-	0.0014	18.7	0.0	0.0016	18.6	0.0	1.1	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
Fe-ADH_2	PF13685.1	gi|408404947|ref|YP_006862930.1|	-	3.1e-61	206.8	0.4	4.2e-61	206.4	0.3	1.2	1	0	0	1	1	1	1	Iron-containing	alcohol	dehydrogenase
Fe-ADH	PF00465.14	gi|408404947|ref|YP_006862930.1|	-	3e-22	78.7	3.1	1.5e-21	76.4	2.2	1.8	1	1	0	1	1	1	1	Iron-containing	alcohol	dehydrogenase
DHQ_synthase	PF01761.15	gi|408404947|ref|YP_006862930.1|	-	1.9e-07	30.3	0.7	1.2e-05	24.3	0.1	3.3	2	1	0	2	2	2	1	3-dehydroquinate	synthase
AIRC	PF00731.15	gi|408404947|ref|YP_006862930.1|	-	0.0025	17.1	0.5	0.0079	15.4	0.1	2.1	2	0	0	2	2	2	1	AIR	carboxylase
UPF0261	PF06792.6	gi|408404947|ref|YP_006862930.1|	-	0.052	12.0	0.1	0.074	11.5	0.1	1.2	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0261)
TRAM	PF01938.15	gi|408404948|ref|YP_006862931.1|	-	2.8e-12	46.2	1.5	3.7e-12	45.8	1.0	1.2	1	0	0	1	1	1	1	TRAM	domain
Beta-Casp	PF10996.3	gi|408404949|ref|YP_006862932.1|	-	2.2e-23	82.5	0.0	1.8e-22	79.6	0.0	2.5	3	0	0	3	3	3	1	Beta-Casp	domain
Lactamase_B	PF00753.22	gi|408404949|ref|YP_006862932.1|	-	5.8e-21	75.0	0.2	1.5e-20	73.6	0.1	1.7	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.2	gi|408404949|ref|YP_006862932.1|	-	2.9e-12	46.5	0.0	5.5e-11	42.3	0.0	2.2	2	0	0	2	2	2	1	Beta-lactamase	superfamily	domain
RMMBL	PF07521.7	gi|408404949|ref|YP_006862932.1|	-	1.3e-08	34.4	0.0	2.8e-08	33.4	0.0	1.6	1	0	0	1	1	1	1	RNA-metabolising	metallo-beta-lactamase
Lactamase_B_3	PF13483.1	gi|408404949|ref|YP_006862932.1|	-	0.00024	20.8	0.0	0.0031	17.2	0.0	2.3	2	0	0	2	2	2	1	Beta-lactamase	superfamily	domain
DUF552	PF04472.7	gi|408404950|ref|YP_006862933.1|	-	4.4e-17	61.7	0.2	4.9e-17	61.6	0.1	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF552)
DUF814	PF05670.8	gi|408404951|ref|YP_006862934.1|	-	5.3e-07	29.4	0.0	9.5e-07	28.6	0.0	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF814)
ThiI	PF02568.9	gi|408404951|ref|YP_006862934.1|	-	3.7e-06	26.5	0.0	5.9e-06	25.8	0.0	1.3	1	0	0	1	1	1	1	Thiamine	biosynthesis	protein	(ThiI)
tRNA_Me_trans	PF03054.11	gi|408404951|ref|YP_006862934.1|	-	0.0002	20.0	0.0	0.00031	19.4	0.0	1.3	1	0	0	1	1	1	1	tRNA	methyl	transferase
Terminase_5	PF06056.7	gi|408404951|ref|YP_006862934.1|	-	0.088	12.3	0.0	0.16	11.5	0.0	1.3	1	0	0	1	1	1	0	Putative	ATPase	subunit	of	terminase	(gpP-like)
HTH_23	PF13384.1	gi|408404951|ref|YP_006862934.1|	-	0.14	11.8	0.0	0.32	10.6	0.0	1.6	1	0	0	1	1	1	0	Homeodomain-like	domain
DUF3852	PF12963.2	gi|408404952|ref|YP_006862935.1|	-	0.2	11.6	1.0	1.3	9.1	0.1	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3852)
B5	PF03484.10	gi|408404953|ref|YP_006862936.1|	-	4.3e-18	64.9	0.2	4.3e-17	61.6	0.0	2.5	2	0	0	2	2	2	1	tRNA	synthetase	B5	domain
B3_4	PF03483.12	gi|408404953|ref|YP_006862936.1|	-	1.1e-11	44.4	0.0	2.2e-11	43.5	0.0	1.4	1	0	0	1	1	1	1	B3/4	domain
tRNA-synt_2d	PF01409.15	gi|408404953|ref|YP_006862936.1|	-	0.0037	16.4	0.0	0.0067	15.6	0.0	1.3	1	0	0	1	1	1	1	tRNA	synthetases	class	II	core	domain	(F)
tRNA-synt_2d	PF01409.15	gi|408404954|ref|YP_006862937.1|	-	1.1e-84	283.5	0.0	1.5e-84	283.0	0.0	1.2	1	0	0	1	1	1	1	tRNA	synthetases	class	II	core	domain	(F)
tRNA-synt_2	PF00152.15	gi|408404954|ref|YP_006862937.1|	-	2.9e-07	29.6	0.5	5.9e-05	21.9	0.0	3.1	3	0	0	3	3	3	1	tRNA	synthetases	class	II	(D,	K	and	N)
tRNA-synt_2b	PF00587.20	gi|408404954|ref|YP_006862937.1|	-	0.0052	16.3	0.1	0.02	14.4	0.1	2.0	1	1	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
tRNA-synt_His	PF13393.1	gi|408404954|ref|YP_006862937.1|	-	0.036	13.1	0.1	0.12	11.4	0.0	1.8	2	0	0	2	2	2	0	Histidyl-tRNA	synthetase
Clp_N	PF02861.15	gi|408404954|ref|YP_006862937.1|	-	0.084	12.8	0.2	0.21	11.5	0.1	1.6	1	0	0	1	1	1	0	Clp	amino	terminal	domain
tRNA-synt_1b	PF00579.20	gi|408404955|ref|YP_006862938.1|	-	1.2e-19	70.4	0.0	2.2e-19	69.7	0.0	1.3	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(W	and	Y)
PTPS	PF01242.14	gi|408404955|ref|YP_006862938.1|	-	0.043	13.5	0.1	0.15	11.7	0.0	1.9	2	0	0	2	2	2	0	6-pyruvoyl	tetrahydropterin	synthase
tRNA-synt_1f	PF01921.13	gi|408404955|ref|YP_006862938.1|	-	0.056	12.1	0.0	0.12	10.9	0.0	1.5	1	1	0	1	1	1	0	tRNA	synthetases	class	I	(K)
CTP_transf_2	PF01467.21	gi|408404958|ref|YP_006862941.1|	-	7.5e-13	48.8	0.0	4.2e-12	46.4	0.0	1.9	1	1	0	1	1	1	1	Cytidylyltransferase
FAD_syn	PF06574.7	gi|408404958|ref|YP_006862941.1|	-	0.002	17.7	0.2	0.0055	16.3	0.1	1.8	2	0	0	2	2	2	1	FAD	synthetase
Fer4	PF00037.22	gi|408404959|ref|YP_006862942.1|	-	3.8e-09	35.7	17.4	0.0001	21.7	1.9	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_9	PF13187.1	gi|408404959|ref|YP_006862942.1|	-	6.5e-07	29.5	7.4	1.3e-06	28.5	5.1	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.2	gi|408404959|ref|YP_006862942.1|	-	7.9e-07	29.3	9.4	1.6e-06	28.3	6.5	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|408404959|ref|YP_006862942.1|	-	9.9e-06	25.2	9.4	2.1e-05	24.2	6.5	1.6	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_8	PF13183.1	gi|408404959|ref|YP_006862942.1|	-	5.1e-05	23.2	6.6	9.3e-05	22.3	4.3	1.6	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_6	PF12837.2	gi|408404959|ref|YP_006862942.1|	-	5.9e-05	22.7	15.0	0.014	15.2	3.1	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.1	gi|408404959|ref|YP_006862942.1|	-	7.7e-05	22.4	8.5	0.00012	21.8	5.9	1.3	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_18	PF13746.1	gi|408404959|ref|YP_006862942.1|	-	0.00048	20.4	4.8	0.1	13.0	0.5	2.5	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.2	gi|408404959|ref|YP_006862942.1|	-	0.00094	18.9	15.2	0.12	12.3	1.8	2.5	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_3	PF12798.2	gi|408404959|ref|YP_006862942.1|	-	0.0049	17.3	16.7	0.32	11.6	2.1	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
DBINO	PF13892.1	gi|408404959|ref|YP_006862942.1|	-	0.028	14.4	0.4	0.042	13.8	0.3	1.2	1	0	0	1	1	1	0	DNA-binding	domain
Fer4_4	PF12800.2	gi|408404959|ref|YP_006862942.1|	-	0.029	14.6	12.1	0.17	12.2	2.1	2.4	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_13	PF13370.1	gi|408404959|ref|YP_006862942.1|	-	0.29	11.5	10.7	3	8.2	0.8	2.7	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain
Fer4_17	PF13534.1	gi|408404959|ref|YP_006862942.1|	-	0.36	11.2	9.3	5.7	7.3	0.3	2.5	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_15	PF13459.1	gi|408404959|ref|YP_006862942.1|	-	0.44	11.1	10.4	4.2	8.0	0.6	2.6	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain
Fer4_16	PF13484.1	gi|408404959|ref|YP_006862942.1|	-	0.57	10.9	10.5	3.2	8.5	2.1	2.6	1	1	2	3	3	3	0	4Fe-4S	double	cluster	binding	domain
DUF2360	PF10152.4	gi|408404959|ref|YP_006862942.1|	-	2.2	8.5	4.3	3.4	7.9	2.9	1.2	1	0	0	1	1	1	0	Predicted	coiled-coil	domain-containing	protein	(DUF2360)
zf-C2H2_6	PF13912.1	gi|408404960|ref|YP_006862943.1|	-	3.3e-06	26.7	0.2	4.2e-06	26.4	0.1	1.2	1	0	0	1	1	1	1	C2H2-type	zinc	finger
zf-C2H2	PF00096.21	gi|408404960|ref|YP_006862943.1|	-	2e-05	24.6	0.9	2.5e-05	24.3	0.6	1.2	1	0	0	1	1	1	1	Zinc	finger,	C2H2	type
zf-C2H2_4	PF13894.1	gi|408404960|ref|YP_006862943.1|	-	0.0053	17.0	0.2	0.0074	16.5	0.1	1.3	1	0	0	1	1	1	1	C2H2-type	zinc	finger
zf-C2HC_2	PF13913.1	gi|408404960|ref|YP_006862943.1|	-	0.014	15.0	0.6	0.019	14.6	0.4	1.2	1	0	0	1	1	1	0	zinc-finger	of	a	C2HC-type
FYVE	PF01363.16	gi|408404960|ref|YP_006862943.1|	-	0.019	14.8	0.1	0.019	14.8	0.1	1.2	1	0	0	1	1	1	0	FYVE	zinc	finger
zf-C2H2_jaz	PF12171.3	gi|408404960|ref|YP_006862943.1|	-	0.028	14.5	0.1	0.035	14.2	0.1	1.2	1	0	0	1	1	1	0	Zinc-finger	double-stranded	RNA-binding
zf-H2C2_2	PF13465.1	gi|408404960|ref|YP_006862943.1|	-	0.028	14.6	0.4	0.2	12.0	0.0	2.0	2	0	0	2	2	2	0	Zinc-finger	double	domain
zf-met	PF12874.2	gi|408404960|ref|YP_006862943.1|	-	0.04	14.1	0.1	0.069	13.3	0.1	1.4	1	0	0	1	1	1	0	Zinc-finger	of	C2H2	type
zf-C2H2_2	PF12756.2	gi|408404960|ref|YP_006862943.1|	-	0.099	12.7	0.1	0.099	12.7	0.1	1.1	1	0	0	1	1	1	0	C2H2	type	zinc-finger	(2	copies)
DUF629	PF04780.7	gi|408404960|ref|YP_006862943.1|	-	0.099	11.1	0.1	0.11	11.0	0.0	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF629)
NTF-like	PF14540.1	gi|408404961|ref|YP_006862944.1|	-	0.1	12.2	0.0	0.14	11.7	0.0	1.3	1	0	0	1	1	1	0	Nucleotidyltransferase-like
PKD	PF00801.15	gi|408404962|ref|YP_006862945.1|	-	0.059	13.1	0.0	0.15	11.7	0.0	1.7	1	1	0	1	1	1	0	PKD	domain
Filamin	PF00630.14	gi|408404962|ref|YP_006862945.1|	-	0.11	13.0	0.0	0.18	12.3	0.0	1.3	1	1	0	1	1	1	0	Filamin/ABP280	repeat
GldH_lipo	PF14109.1	gi|408404962|ref|YP_006862945.1|	-	0.13	12.4	0.1	0.23	11.6	0.0	1.3	1	1	0	1	1	1	0	GldH	lipoprotein
zf-C2H2_4	PF13894.1	gi|408404963|ref|YP_006862946.1|	-	0.0015	18.7	0.3	0.0022	18.2	0.2	1.3	1	0	0	1	1	1	1	C2H2-type	zinc	finger
zf-C2H2_2	PF12756.2	gi|408404963|ref|YP_006862946.1|	-	0.0017	18.4	0.0	0.0018	18.3	0.0	1.1	1	0	0	1	1	1	1	C2H2	type	zinc-finger	(2	copies)
zf-C2H2	PF00096.21	gi|408404963|ref|YP_006862946.1|	-	0.038	14.3	0.4	0.054	13.8	0.3	1.3	1	0	0	1	1	1	0	Zinc	finger,	C2H2	type
DUF4072	PF13284.1	gi|408404965|ref|YP_006862948.1|	-	0.31	11.2	1.8	0.3	11.2	0.4	1.6	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4072)
Rhodanese	PF00581.15	gi|408404967|ref|YP_006862950.1|	-	1.8e-41	141.0	0.1	2.8e-24	85.6	0.0	2.1	2	0	0	2	2	2	2	Rhodanese-like	domain
DUF442	PF04273.8	gi|408404967|ref|YP_006862950.1|	-	0.065	13.0	0.0	0.56	10.0	0.0	2.1	2	0	0	2	2	2	0	Putative	phosphatase	(DUF442)
DUF4052	PF13261.1	gi|408404968|ref|YP_006862951.1|	-	0.069	12.5	0.0	0.081	12.3	0.0	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4052)
DUF2964	PF11177.3	gi|408404968|ref|YP_006862951.1|	-	0.1	12.5	0.1	0.16	11.9	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2964)
TC1	PF15063.1	gi|408404971|ref|YP_006862954.1|	-	0.058	12.9	0.0	0.072	12.6	0.0	1.3	1	1	0	1	1	1	0	Thyroid	cancer	protein	1
DNA_pol3_beta_3	PF02768.10	gi|408404972|ref|YP_006862955.1|	-	0.0041	16.6	0.3	0.0043	16.6	0.2	1.0	1	0	0	1	1	1	1	DNA	polymerase	III	beta	subunit,	C-terminal	domain
Rieske	PF00355.21	gi|408404973|ref|YP_006862956.1|	-	2.6e-16	58.9	0.1	3.1e-16	58.7	0.0	1.2	1	0	0	1	1	1	1	Rieske	[2Fe-2S]	domain
Rieske_2	PF13806.1	gi|408404973|ref|YP_006862956.1|	-	1.5e-07	31.0	0.0	1.8e-07	30.7	0.0	1.1	1	0	0	1	1	1	1	Rieske-like	[2Fe-2S]	domain
Ferritin	PF00210.19	gi|408404974|ref|YP_006862957.1|	-	1.8e-19	69.8	0.0	2.2e-19	69.6	0.0	1.1	1	0	0	1	1	1	1	Ferritin-like	domain
Rubrerythrin	PF02915.12	gi|408404974|ref|YP_006862957.1|	-	0.015	15.5	0.0	0.024	14.9	0.0	1.3	1	1	0	1	1	1	0	Rubrerythrin
Glutaredoxin	PF00462.19	gi|408404976|ref|YP_006862959.1|	-	0.011	15.6	0.0	0.016	15.2	0.0	1.3	1	0	0	1	1	1	0	Glutaredoxin
NAD_kinase	PF01513.16	gi|408404977|ref|YP_006862960.1|	-	8.5e-30	103.4	1.3	1.9e-29	102.3	0.9	1.5	1	1	0	1	1	1	1	ATP-NAD	kinase
DAGK_cat	PF00781.19	gi|408404977|ref|YP_006862960.1|	-	0.065	12.6	0.0	0.11	11.9	0.0	1.4	1	0	0	1	1	1	0	Diacylglycerol	kinase	catalytic	domain
PIN	PF01850.16	gi|408404978|ref|YP_006862961.1|	-	1.3e-05	25.4	0.3	1.9e-05	24.9	0.2	1.3	1	0	0	1	1	1	1	PIN	domain
NOB1_Zn_bind	PF08772.6	gi|408404978|ref|YP_006862961.1|	-	0.00043	20.0	2.1	0.00043	20.0	0.6	1.7	2	0	0	2	2	2	1	Nin	one	binding	(NOB1)	Zn-ribbon	like
DZR	PF12773.2	gi|408404978|ref|YP_006862961.1|	-	0.0012	18.6	0.6	0.0024	17.6	0.4	1.5	1	0	0	1	1	1	1	Double	zinc	ribbon
DUF2597	PF10772.4	gi|408404978|ref|YP_006862961.1|	-	0.0019	18.0	0.1	0.0026	17.6	0.1	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2597)
DUF4411	PF14367.1	gi|408404978|ref|YP_006862961.1|	-	0.002	17.8	0.1	0.0031	17.2	0.1	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4411)
zf-ribbon_3	PF13248.1	gi|408404978|ref|YP_006862961.1|	-	0.002	17.2	4.9	0.0035	16.4	3.4	1.4	1	0	0	1	1	1	1	zinc-ribbon	domain
PIN_2	PF10130.4	gi|408404978|ref|YP_006862961.1|	-	0.039	13.9	0.1	0.053	13.5	0.0	1.3	1	0	0	1	1	1	0	PIN	domain
zf-C3HC4_3	PF13920.1	gi|408404978|ref|YP_006862961.1|	-	0.059	13.0	0.6	0.09	12.4	0.4	1.3	1	0	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
DUF35_N	PF12172.3	gi|408404978|ref|YP_006862961.1|	-	0.074	12.9	1.4	0.13	12.2	0.9	1.3	1	0	0	1	1	1	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
UPF0278	PF08745.6	gi|408404978|ref|YP_006862961.1|	-	0.087	12.0	0.2	0.65	9.2	0.0	2.3	3	0	0	3	3	3	0	UPF0278	family
zinc-ribbons_6	PF07191.7	gi|408404978|ref|YP_006862961.1|	-	0.11	12.3	0.5	2.2	8.1	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbons
Cys_rich_KTR	PF14205.1	gi|408404978|ref|YP_006862961.1|	-	0.13	11.6	2.5	0.14	11.6	0.2	2.0	2	0	0	2	2	2	0	Cysteine-rich	KTR
zinc_ribbon_2	PF13240.1	gi|408404978|ref|YP_006862961.1|	-	0.25	10.8	5.2	0.86	9.1	3.6	1.9	1	1	0	1	1	1	0	zinc-ribbon	domain
Nudix_N_2	PF14803.1	gi|408404978|ref|YP_006862961.1|	-	1.1	9.0	3.7	13	5.6	0.7	2.4	2	0	0	2	2	2	0	Nudix	N-terminal
zf-C2HC_2	PF13913.1	gi|408404978|ref|YP_006862961.1|	-	3.6	7.3	5.7	9.2	6.0	0.3	2.5	2	0	0	2	2	2	0	zinc-finger	of	a	C2HC-type
ERCC4	PF02732.10	gi|408404979|ref|YP_006862962.1|	-	1.4e-24	86.4	0.0	2.1e-24	85.9	0.0	1.3	1	0	0	1	1	1	1	ERCC4	domain
HHH_5	PF14520.1	gi|408404979|ref|YP_006862962.1|	-	2e-09	37.4	0.5	7.3e-09	35.6	0.0	2.1	2	1	0	2	2	2	1	Helix-hairpin-helix	domain
HHH_2	PF12826.2	gi|408404979|ref|YP_006862962.1|	-	2.4e-07	30.5	0.0	8e-07	28.8	0.0	1.9	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
HHH	PF00633.18	gi|408404979|ref|YP_006862962.1|	-	1.3e-06	27.7	0.8	0.058	13.1	0.0	3.3	3	0	0	3	3	3	2	Helix-hairpin-helix	motif
IMS_HHH	PF11798.3	gi|408404979|ref|YP_006862962.1|	-	0.0065	16.4	0.0	0.048	13.7	0.0	2.4	2	0	0	2	2	2	1	IMS	family	HHH	motif
HHH_3	PF12836.2	gi|408404979|ref|YP_006862962.1|	-	0.007	16.2	0.1	6.4	6.8	0.0	2.6	2	0	0	2	2	2	2	Helix-hairpin-helix	motif
Transposase_20	PF02371.11	gi|408404979|ref|YP_006862962.1|	-	0.022	14.8	0.0	0.17	12.0	0.0	2.2	1	1	1	2	2	2	0	Transposase	IS116/IS110/IS902	family
HHH_8	PF14716.1	gi|408404979|ref|YP_006862962.1|	-	0.05	13.7	0.0	1.4	9.1	0.0	2.5	1	1	1	2	2	2	0	Helix-hairpin-helix	domain
Topo-VIb_trans	PF09239.6	gi|408404979|ref|YP_006862962.1|	-	0.053	13.0	0.0	0.086	12.3	0.0	1.3	1	0	0	1	1	1	0	Topoisomerase	VI	B	subunit,	transducer
5_3_exonuc	PF01367.15	gi|408404979|ref|YP_006862962.1|	-	0.093	12.9	0.0	0.55	10.4	0.0	2.2	1	1	0	2	2	2	0	5'-3'	exonuclease,	C-terminal	SAM	fold
Prefoldin_2	PF01920.15	gi|408404980|ref|YP_006862963.1|	-	1.2e-21	76.4	16.2	1.3e-21	76.3	11.3	1.0	1	0	0	1	1	1	1	Prefoldin	subunit
Cortex-I_coil	PF09304.5	gi|408404980|ref|YP_006862963.1|	-	0.00033	20.6	7.3	0.013	15.4	0.7	2.1	2	0	0	2	2	2	2	Cortexillin	I,	coiled	coil
Lipoprotein_7	PF01540.11	gi|408404980|ref|YP_006862963.1|	-	0.013	14.6	0.8	0.015	14.3	0.6	1.2	1	0	0	1	1	1	0	Adhesin	lipoprotein
DUF4657	PF15552.1	gi|408404980|ref|YP_006862963.1|	-	0.025	13.8	2.9	0.033	13.4	2.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4657)
Mod_r	PF07200.8	gi|408404980|ref|YP_006862963.1|	-	0.052	13.4	8.8	0.49	10.3	0.8	2.0	2	0	0	2	2	2	0	Modifier	of	rudimentary	(Mod(r))	protein
Rad50_zn_hook	PF04423.9	gi|408404980|ref|YP_006862963.1|	-	0.51	9.8	3.9	3.8	7.0	0.0	2.8	3	0	0	3	3	3	0	Rad50	zinc	hook	motif
AAA_23	PF13476.1	gi|408404980|ref|YP_006862963.1|	-	0.58	10.4	8.2	0.82	9.9	5.7	1.2	1	0	0	1	1	1	0	AAA	domain
ETC_C1_NDUFA5	PF04716.9	gi|408404980|ref|YP_006862963.1|	-	0.75	9.3	3.5	8.6	5.9	2.4	2.4	1	1	0	1	1	1	0	ETC	complex	I	subunit	conserved	region
EzrA	PF06160.7	gi|408404980|ref|YP_006862963.1|	-	2.4	6.2	13.2	0.12	10.5	2.3	1.9	1	1	1	2	2	2	0	Septation	ring	formation	regulator,	EzrA
Pedibin	PF08182.6	gi|408404980|ref|YP_006862963.1|	-	3.6	7.1	10.1	0.096	12.2	1.4	2.4	2	0	0	2	2	2	0	Pedibin/Hym-346	family
DUF2361	PF10153.4	gi|408404980|ref|YP_006862963.1|	-	3.9	7.7	9.7	2.3	8.4	4.9	1.7	1	1	1	2	2	2	0	Uncharacterised	conserved	protein	(DUF2361)
DUF972	PF06156.8	gi|408404980|ref|YP_006862963.1|	-	4.4	7.6	11.0	70	3.8	7.6	2.1	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF972)
DUF919	PF06034.6	gi|408404980|ref|YP_006862963.1|	-	6.3	6.5	11.2	0.072	12.7	1.2	2.4	3	0	0	3	3	3	0	Nucleopolyhedrovirus	protein	of	unknown	function	(DUF919)
DUF2203	PF09969.4	gi|408404980|ref|YP_006862963.1|	-	9.2	6.5	9.2	3.8e+02	1.3	6.4	2.1	1	1	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2203)
PMSI1	PF15322.1	gi|408404981|ref|YP_006862964.1|	-	0.27	10.2	4.1	0.36	9.8	2.8	1.1	1	0	0	1	1	1	0	Protein	missing	in	infertile	sperm	1,	putative
DUF2613	PF11021.3	gi|408404981|ref|YP_006862964.1|	-	1.6	8.5	7.3	0.25	11.0	2.0	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2613)
DUF3187	PF11383.3	gi|408404981|ref|YP_006862964.1|	-	1.8	7.6	8.1	0.41	9.7	2.3	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3187)
Pcc1	PF09341.5	gi|408404982|ref|YP_006862965.1|	-	2.3e-10	40.3	0.1	2.5e-10	40.2	0.1	1.1	1	0	0	1	1	1	1	Transcription	factor	Pcc1
Ribosomal_L37ae	PF01780.14	gi|408404983|ref|YP_006862966.1|	-	6e-16	58.0	0.6	6.3e-16	58.0	0.4	1.0	1	0	0	1	1	1	1	Ribosomal	L37ae	protein	family
Zn_Tnp_IS1595	PF12760.2	gi|408404983|ref|YP_006862966.1|	-	0.00021	21.0	3.0	0.00029	20.5	2.1	1.2	1	0	0	1	1	1	1	Transposase	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.6	gi|408404983|ref|YP_006862966.1|	-	0.0026	17.3	1.0	0.0038	16.8	0.7	1.3	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
C1_1	PF00130.17	gi|408404983|ref|YP_006862966.1|	-	0.0044	16.7	1.0	0.0065	16.1	0.7	1.1	1	0	0	1	1	1	1	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
zf-ribbon_3	PF13248.1	gi|408404983|ref|YP_006862966.1|	-	0.0047	16.1	1.4	0.75	9.0	0.1	2.2	2	0	0	2	2	2	1	zinc-ribbon	domain
zf-RanBP	PF00641.13	gi|408404983|ref|YP_006862966.1|	-	0.0099	14.9	3.5	0.062	12.4	0.3	2.1	2	0	0	2	2	2	1	Zn-finger	in	Ran	binding	protein	and	others
Rubredoxin	PF00301.15	gi|408404983|ref|YP_006862966.1|	-	0.023	14.5	0.8	2.9	7.8	0.2	2.2	2	0	0	2	2	2	0	Rubredoxin
Zn-ribbon_8	PF09723.5	gi|408404983|ref|YP_006862966.1|	-	0.032	14.1	0.5	1.5	8.8	0.0	2.2	2	0	0	2	2	2	0	Zinc	ribbon	domain
DUF4379	PF14311.1	gi|408404983|ref|YP_006862966.1|	-	0.042	13.6	1.6	6.4	6.6	0.2	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4379)
zinc_ribbon_2	PF13240.1	gi|408404983|ref|YP_006862966.1|	-	0.063	12.7	2.9	5.1	6.7	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-TFIIB	PF13453.1	gi|408404983|ref|YP_006862966.1|	-	0.065	12.4	1.0	7.1	5.9	0.0	2.3	2	0	0	2	2	2	0	Transcription	factor	zinc-finger
DNA_ligase_ZBD	PF03119.11	gi|408404983|ref|YP_006862966.1|	-	0.1	12.3	3.5	1	9.1	0.5	2.3	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
zf-C4_Topoisom	PF01396.14	gi|408404983|ref|YP_006862966.1|	-	0.15	11.6	4.6	4.4	6.8	0.1	2.6	3	0	0	3	3	3	0	Topoisomerase	DNA	binding	C4	zinc	finger
zf-H2C2_2	PF13465.1	gi|408404983|ref|YP_006862966.1|	-	0.15	12.3	1.4	8.6	6.8	0.0	2.3	2	0	0	2	2	2	0	Zinc-finger	double	domain
DZR	PF12773.2	gi|408404983|ref|YP_006862966.1|	-	0.16	11.7	2.3	10	6.0	2.6	2.0	1	1	0	1	1	1	0	Double	zinc	ribbon
UPF0547	PF10571.4	gi|408404983|ref|YP_006862966.1|	-	0.26	11.0	2.5	5.1	6.8	0.4	2.1	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
DUF2296	PF10058.4	gi|408404983|ref|YP_006862966.1|	-	0.26	11.0	2.0	6.7	6.5	0.2	2.2	2	0	0	2	2	2	0	Predicted	integral	membrane	metal-binding	protein	(DUF2296)
zf-NADH-PPase	PF09297.6	gi|408404983|ref|YP_006862966.1|	-	0.36	10.3	4.4	0.37	10.3	0.2	2.2	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
zf-tcix	PF14952.1	gi|408404983|ref|YP_006862966.1|	-	0.39	10.0	8.1	2	7.8	1.4	2.3	1	1	1	2	2	2	0	Putative	treble-clef,	zinc-finger,	Zn-binding
zf-ISL3	PF14690.1	gi|408404983|ref|YP_006862966.1|	-	0.41	10.7	6.1	2.2	8.3	0.3	2.6	3	0	0	3	3	3	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
zf-C2H2_4	PF13894.1	gi|408404983|ref|YP_006862966.1|	-	0.45	10.9	4.5	1.5	9.3	0.0	2.5	2	1	0	2	2	2	0	C2H2-type	zinc	finger
zinc_ribbon_5	PF13719.1	gi|408404983|ref|YP_006862966.1|	-	1.3	8.6	6.7	7.2	6.2	1.0	2.6	2	1	0	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_4	PF13717.1	gi|408404983|ref|YP_006862966.1|	-	1.6	8.4	6.9	8	6.2	1.1	2.6	2	1	0	2	2	2	0	zinc-ribbon	domain
DUF1610	PF07754.6	gi|408404983|ref|YP_006862966.1|	-	3.5	7.8	5.9	13	6.0	0.4	2.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1610)
RNase_PH	PF01138.16	gi|408404984|ref|YP_006862967.1|	-	1.1e-25	90.4	0.0	2.2e-25	89.5	0.0	1.5	1	0	0	1	1	1	1	3'	exoribonuclease	family,	domain	1
RNase_PH_C	PF03725.10	gi|408404984|ref|YP_006862967.1|	-	1.3e-10	41.0	0.0	2.4e-10	40.1	0.0	1.5	1	0	0	1	1	1	1	3'	exoribonuclease	family,	domain	2
DUF3237	PF11578.3	gi|408404984|ref|YP_006862967.1|	-	0.0065	15.7	0.0	0.11	11.7	0.0	2.2	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF3237)
RNase_PH	PF01138.16	gi|408404985|ref|YP_006862968.1|	-	9.8e-34	116.5	0.0	1.3e-33	116.1	0.0	1.2	1	0	0	1	1	1	1	3'	exoribonuclease	family,	domain	1
RNase_PH_C	PF03725.10	gi|408404985|ref|YP_006862968.1|	-	2.5e-16	59.3	0.1	1.3e-15	57.0	0.1	2.2	2	0	0	2	2	2	1	3'	exoribonuclease	family,	domain	2
KH_1	PF00013.24	gi|408404986|ref|YP_006862969.1|	-	1.8e-11	43.4	2.8	1.8e-11	43.4	2.0	1.8	2	0	0	2	2	2	1	KH	domain
KH_3	PF13014.1	gi|408404986|ref|YP_006862969.1|	-	6.8e-05	22.4	1.5	0.0002	20.9	1.1	1.9	1	0	0	1	1	1	1	KH	domain
KH_2	PF07650.12	gi|408404986|ref|YP_006862969.1|	-	0.00026	20.4	1.4	0.00081	18.9	0.9	1.8	1	1	0	1	1	1	1	KH	domain
SBDS	PF01172.13	gi|408404987|ref|YP_006862970.1|	-	1.1e-23	82.8	0.0	1.8e-23	82.1	0.0	1.4	1	0	0	1	1	1	1	Shwachman-Bodian-Diamond	syndrome	(SBDS)	protein
SBDS_C	PF09377.5	gi|408404987|ref|YP_006862970.1|	-	2.8e-18	65.8	0.3	5.9e-18	64.7	0.0	1.6	2	0	0	2	2	2	1	SBDS	protein	C-terminal	domain
HD_assoc	PF13286.1	gi|408404987|ref|YP_006862970.1|	-	0.036	14.3	0.9	0.11	12.7	0.2	2.1	2	1	1	3	3	3	0	Phosphohydrolase-associated	domain
XkdN	PF08890.6	gi|408404987|ref|YP_006862970.1|	-	0.061	13.0	0.1	0.12	12.1	0.0	1.5	1	0	0	1	1	1	0	Phage	XkdN-like	protein
RNA_pol_A_bac	PF01000.21	gi|408404989|ref|YP_006862972.1|	-	1.7e-25	89.3	0.0	4.4e-25	87.9	0.0	1.6	2	0	0	2	2	2	1	RNA	polymerase	Rpb3/RpoA	insert	domain
RNA_pol_L	PF01193.19	gi|408404989|ref|YP_006862972.1|	-	0.00012	21.1	0.0	0.00012	21.1	0.0	1.2	1	0	0	1	1	1	1	RNA	polymerase	Rpb3/Rpb11	dimerisation	domain
RNA_pol_L_2	PF13656.1	gi|408404989|ref|YP_006862972.1|	-	0.08	12.3	0.0	0.13	11.7	0.0	1.3	1	0	0	1	1	1	0	RNA	polymerase	Rpb3/Rpb11	dimerisation	domain
Ribosomal_L18e	PF00828.14	gi|408404990|ref|YP_006862973.1|	-	2e-13	50.8	0.4	2.6e-13	50.4	0.3	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L18e/L15
NosL	PF05573.7	gi|408404990|ref|YP_006862973.1|	-	0.14	11.8	0.0	0.17	11.5	0.0	1.2	1	0	0	1	1	1	0	NosL
Ribosomal_L13	PF00572.13	gi|408404991|ref|YP_006862974.1|	-	6.1e-27	94.2	0.1	7.4e-27	93.9	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L13
Ribosomal_S9	PF00380.14	gi|408404992|ref|YP_006862975.1|	-	1.5e-31	109.1	0.6	1.8e-31	108.9	0.4	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S9/S16
HTH_45	PF14947.1	gi|408404993|ref|YP_006862976.1|	-	8.8e-20	70.3	1.7	1e-19	70.1	1.2	1.0	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF4364	PF14277.1	gi|408404993|ref|YP_006862976.1|	-	0.012	15.2	0.4	0.013	15.0	0.3	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
ER	PF01133.12	gi|408404993|ref|YP_006862976.1|	-	0.034	13.8	0.2	0.042	13.5	0.2	1.2	1	0	0	1	1	1	0	Enhancer	of	rudimentary
HTH_27	PF13463.1	gi|408404993|ref|YP_006862976.1|	-	0.13	12.6	0.1	0.2	12.0	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
Guanylate_cyc	PF00211.15	gi|408404994|ref|YP_006862977.1|	-	2.8e-17	62.6	0.0	4.3e-17	62.0	0.0	1.2	1	0	0	1	1	1	1	Adenylate	and	Guanylate	cyclase	catalytic	domain
DUF1043	PF06295.7	gi|408404995|ref|YP_006862978.1|	-	0.33	10.5	2.5	0.76	9.4	0.8	2.1	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF1043)
MFS_1	PF07690.11	gi|408404996|ref|YP_006862979.1|	-	1.9e-29	102.5	38.6	1.5e-16	60.1	11.3	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
ATG22	PF11700.3	gi|408404996|ref|YP_006862979.1|	-	9.6e-05	21.0	27.3	0.0016	16.9	10.2	3.1	1	1	1	2	2	2	2	Vacuole	effluxer	Atg22	like
Dr_adhesin	PF12393.3	gi|408404996|ref|YP_006862979.1|	-	4.1	7.6	6.2	42	4.4	1.5	3.1	2	0	0	2	2	2	0	Dr	family	adhesin
MS_channel	PF00924.13	gi|408404998|ref|YP_006862981.1|	-	1.9e-51	174.3	0.5	1.9e-51	174.3	0.3	1.5	2	0	0	2	2	2	1	Mechanosensitive	ion	channel
FtsX	PF02687.16	gi|408404998|ref|YP_006862981.1|	-	6.8	6.4	12.7	4.3	7.1	1.5	2.4	1	1	1	2	2	2	0	FtsX-like	permease	family
DUF432	PF04254.8	gi|408404999|ref|YP_006862982.1|	-	3.4e-32	110.9	0.6	5.6e-32	110.2	0.4	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF432)
Nitroreductase	PF00881.19	gi|408405000|ref|YP_006862983.1|	-	2.7e-28	98.8	0.0	3.9e-28	98.3	0.0	1.2	1	0	0	1	1	1	1	Nitroreductase	family
DUF2741	PF10890.3	gi|408405001|ref|YP_006862984.1|	-	0.029	14.5	0.0	0.044	13.9	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2741)
CTV_P6	PF06706.6	gi|408405001|ref|YP_006862984.1|	-	0.099	12.1	0.0	0.15	11.5	0.0	1.3	1	0	0	1	1	1	0	Citrus	tristeza	virus	6-kDa	protein
NHL	PF01436.16	gi|408405002|ref|YP_006862985.1|	-	1.9e-25	87.4	2.8	1.5e-05	24.7	0.0	7.9	8	0	0	8	8	8	6	NHL	repeat
Redoxin	PF08534.5	gi|408405002|ref|YP_006862985.1|	-	6.5e-15	54.9	0.0	1.5e-14	53.8	0.0	1.6	1	0	0	1	1	1	1	Redoxin
AhpC-TSA	PF00578.16	gi|408405002|ref|YP_006862985.1|	-	1.9e-14	53.4	0.0	3.1e-14	52.7	0.0	1.4	1	0	0	1	1	1	1	AhpC/TSA	family
Thioredoxin_8	PF13905.1	gi|408405002|ref|YP_006862985.1|	-	1.2e-13	50.9	0.0	2.3e-13	50.0	0.0	1.4	1	0	0	1	1	1	1	Thioredoxin-like
Thioredoxin_2	PF13098.1	gi|408405002|ref|YP_006862985.1|	-	2e-06	27.9	0.0	3.7e-06	27.0	0.0	1.4	1	0	0	1	1	1	1	Thioredoxin-like	domain
SGL	PF08450.7	gi|408405002|ref|YP_006862985.1|	-	0.00011	21.6	0.0	0.85	8.9	0.0	3.6	3	1	1	4	4	4	2	SMP-30/Gluconolaconase/LRE-like	region
Thioredoxin	PF00085.15	gi|408405002|ref|YP_006862985.1|	-	0.00046	19.8	0.0	0.14	11.8	0.0	2.3	2	0	0	2	2	2	2	Thioredoxin
LVIVD	PF08309.6	gi|408405002|ref|YP_006862985.1|	-	0.00089	18.2	0.9	0.71	8.9	0.0	3.3	4	0	0	4	4	4	2	LVIVD	repeat
GSHPx	PF00255.14	gi|408405002|ref|YP_006862985.1|	-	0.045	13.1	0.0	0.082	12.2	0.0	1.4	1	0	0	1	1	1	0	Glutathione	peroxidase
DUF1582	PF07621.6	gi|408405002|ref|YP_006862985.1|	-	0.18	11.8	0.4	19	5.4	0.0	3.1	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF1582)
Cu-oxidase_3	PF07732.10	gi|408405003|ref|YP_006862986.1|	-	6.7e-27	93.5	1.7	6e-22	77.6	0.2	2.2	2	0	0	2	2	2	2	Multicopper	oxidase
Cu-oxidase_2	PF07731.9	gi|408405003|ref|YP_006862986.1|	-	5.9e-18	64.7	2.6	1.5e-07	31.0	0.0	3.2	2	1	0	2	2	2	2	Multicopper	oxidase
Cupredoxin_1	PF13473.1	gi|408405003|ref|YP_006862986.1|	-	0.11	12.3	0.0	3.7	7.4	0.0	2.5	2	0	0	2	2	2	0	Cupredoxin-like	domain
DUF2024	PF09630.5	gi|408405004|ref|YP_006862987.1|	-	2.9e-33	113.4	0.6	3.2e-33	113.2	0.4	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF2024)
PALP	PF00291.20	gi|408405005|ref|YP_006862988.1|	-	3.6e-81	272.7	4.4	4.5e-81	272.4	3.1	1.1	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
ACT	PF01842.20	gi|408405005|ref|YP_006862988.1|	-	0.0021	17.5	0.0	0.0056	16.1	0.0	1.7	1	0	0	1	1	1	1	ACT	domain
ACT_4	PF13291.1	gi|408405005|ref|YP_006862988.1|	-	0.0037	17.5	0.0	0.0098	16.2	0.0	1.6	1	0	0	1	1	1	1	ACT	domain
Tnp_zf-ribbon_2	PF13842.1	gi|408405006|ref|YP_006862989.1|	-	0.093	13.1	0.3	0.12	12.8	0.2	1.1	1	0	0	1	1	1	0	DDE_Tnp_1-like	zinc-ribbon
zf-C2H2_6	PF13912.1	gi|408405006|ref|YP_006862989.1|	-	5	7.1	6.1	8.8	6.3	4.2	1.4	1	1	0	1	1	1	0	C2H2-type	zinc	finger
HMG_CoA_synt_C	PF08540.5	gi|408405007|ref|YP_006862990.1|	-	3.6e-33	115.2	0.2	6.6e-33	114.3	0.1	1.4	1	1	0	1	1	1	1	Hydroxymethylglutaryl-coenzyme	A	synthase	C	terminal
HMG_CoA_synt_N	PF01154.12	gi|408405007|ref|YP_006862990.1|	-	6.9e-30	103.8	0.4	1.5e-29	102.7	0.1	1.6	2	0	0	2	2	2	1	Hydroxymethylglutaryl-coenzyme	A	synthase	N	terminal
DUF948	PF06103.6	gi|408405011|ref|YP_006862994.1|	-	0.058	13.2	0.3	0.16	11.8	0.2	1.8	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF948)
Sod_Fe_C	PF02777.13	gi|408405012|ref|YP_006862995.1|	-	2.9e-41	139.5	2.0	4.7e-41	138.9	1.4	1.3	1	0	0	1	1	1	1	Iron/manganese	superoxide	dismutases,	C-terminal	domain
Sod_Fe_N	PF00081.17	gi|408405012|ref|YP_006862995.1|	-	6.2e-29	100.0	0.9	6.2e-29	100.0	0.6	1.7	2	0	0	2	2	2	1	Iron/manganese	superoxide	dismutases,	alpha-hairpin	domain
CxxCxxCC	PF03692.10	gi|408405013|ref|YP_006862996.1|	-	5.2e-08	33.2	0.0	1.2e-07	32.0	0.0	1.7	1	1	0	1	1	1	1	Putative	zinc-	or	iron-chelating	domain
HTH_5	PF01022.15	gi|408405015|ref|YP_006862998.1|	-	0.0016	18.0	0.0	0.0037	16.8	0.0	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
TrmB	PF01978.14	gi|408405015|ref|YP_006862998.1|	-	0.0036	16.9	0.0	0.014	15.1	0.0	2.0	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
CARD	PF00619.16	gi|408405015|ref|YP_006862998.1|	-	0.061	13.1	0.3	0.31	10.8	0.1	2.1	2	0	0	2	2	2	0	Caspase	recruitment	domain
HTH_9	PF08221.6	gi|408405015|ref|YP_006862998.1|	-	0.074	12.9	0.0	0.17	11.7	0.0	1.6	1	0	0	1	1	1	0	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
HTH_24	PF13412.1	gi|408405015|ref|YP_006862998.1|	-	0.092	12.1	0.1	0.69	9.3	0.0	2.5	3	0	0	3	3	3	0	Winged	helix-turn-helix	DNA-binding
Cu-oxidase	PF00394.17	gi|408405021|ref|YP_006863004.1|	-	0.0049	16.7	0.2	0.0062	16.4	0.1	1.2	1	0	0	1	1	1	1	Multicopper	oxidase
YtzH	PF14165.1	gi|408405021|ref|YP_006863004.1|	-	0.12	12.6	1.1	0.2	11.9	0.8	1.4	1	1	0	1	1	1	0	YtzH-like	protein
PEPCK_ATP	PF01293.15	gi|408405022|ref|YP_006863005.1|	-	2.8e-225	748.1	0.0	3.2e-225	747.9	0.0	1.0	1	0	0	1	1	1	1	Phosphoenolpyruvate	carboxykinase
PSD1	PF07587.6	gi|408405022|ref|YP_006863005.1|	-	0.18	11.1	0.0	0.28	10.5	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1553)
DAGK_cat	PF00781.19	gi|408405024|ref|YP_006863007.1|	-	0.015	14.7	0.0	0.017	14.5	0.0	1.2	1	0	0	1	1	1	0	Diacylglycerol	kinase	catalytic	domain
CMD	PF02627.15	gi|408405024|ref|YP_006863007.1|	-	0.027	14.3	0.0	0.05	13.4	0.0	1.4	1	0	0	1	1	1	0	Carboxymuconolactone	decarboxylase	family
Sigma70_r3	PF04539.11	gi|408405024|ref|YP_006863007.1|	-	0.061	13.2	0.0	0.13	12.1	0.0	1.6	1	0	0	1	1	1	0	Sigma-70	region	3
MSC	PF09402.5	gi|408405024|ref|YP_006863007.1|	-	0.13	10.9	0.0	0.13	10.9	0.0	1.1	1	0	0	1	1	1	0	Man1-Src1p-C-terminal	domain
DOT1	PF08123.8	gi|408405026|ref|YP_006863009.1|	-	1.6e-10	40.6	0.1	1.1e-08	34.5	0.0	2.2	1	1	0	1	1	1	1	Histone	methylation	protein	DOT1
Methyltransf_26	PF13659.1	gi|408405026|ref|YP_006863009.1|	-	6e-07	29.5	0.0	7.6e-07	29.1	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|408405026|ref|YP_006863009.1|	-	1.3e-05	24.8	0.0	1.8e-05	24.4	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|408405026|ref|YP_006863009.1|	-	1.4e-05	25.6	0.2	3.4e-05	24.3	0.1	1.8	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|408405026|ref|YP_006863009.1|	-	2.8e-05	24.4	0.0	5e-05	23.6	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
RrnaAD	PF00398.15	gi|408405026|ref|YP_006863009.1|	-	3.3e-05	23.0	0.0	5.1e-05	22.4	0.0	1.3	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
CMAS	PF02353.15	gi|408405026|ref|YP_006863009.1|	-	4.2e-05	22.7	0.0	6.3e-05	22.1	0.0	1.2	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
Methyltransf_12	PF08242.7	gi|408405026|ref|YP_006863009.1|	-	8.8e-05	22.9	0.0	0.00016	22.0	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.7	gi|408405026|ref|YP_006863009.1|	-	0.00013	22.3	0.0	0.00024	21.5	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_4	PF02390.12	gi|408405026|ref|YP_006863009.1|	-	0.001	18.1	0.0	0.0015	17.6	0.0	1.2	1	0	0	1	1	1	1	Putative	methyltransferase
DUF3052	PF11253.3	gi|408405026|ref|YP_006863009.1|	-	0.011	15.2	0.0	0.019	14.5	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3052)
DUF77	PF01910.12	gi|408405027|ref|YP_006863010.1|	-	4e-26	90.5	1.1	4.5e-26	90.3	0.8	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF77
HrpA_pilin	PF09589.5	gi|408405027|ref|YP_006863010.1|	-	0.0091	16.4	0.3	0.012	16.0	0.2	1.2	1	0	0	1	1	1	1	HrpA	pilus	formation	protein
NPV_P10	PF05531.7	gi|408405027|ref|YP_006863010.1|	-	0.062	13.5	4.1	0.49	10.6	0.2	2.2	1	1	1	2	2	2	0	Nucleopolyhedrovirus	P10	protein
ADH_zinc_N	PF00107.21	gi|408405027|ref|YP_006863010.1|	-	0.1	12.1	0.2	0.16	11.4	0.2	1.3	1	0	0	1	1	1	0	Zinc-binding	dehydrogenase
YbaB_DNA_bd	PF02575.11	gi|408405027|ref|YP_006863010.1|	-	5	7.0	7.4	4.5	7.2	1.1	2.2	2	0	0	2	2	2	0	YbaB/EbfC	DNA-binding	family
Na_H_Exchanger	PF00999.16	gi|408405028|ref|YP_006863011.1|	-	7.4e-62	209.0	50.6	8.8e-62	208.7	35.0	1.0	1	0	0	1	1	1	1	Sodium/hydrogen	exchanger	family
DUF4605	PF15378.1	gi|408405028|ref|YP_006863011.1|	-	0.015	15.0	2.4	0.015	15.0	1.6	3.0	4	0	0	4	4	4	0	Domain	of	unknown	function	(DUF4605)
DUF4231	PF14015.1	gi|408405029|ref|YP_006863012.1|	-	0.077	12.9	0.1	0.077	12.9	0.1	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4231)
Rieske	PF00355.21	gi|408405030|ref|YP_006863013.1|	-	7.2e-18	63.9	0.0	7.9e-18	63.8	0.0	1.1	1	0	0	1	1	1	1	Rieske	[2Fe-2S]	domain
Rieske_2	PF13806.1	gi|408405030|ref|YP_006863013.1|	-	2.8e-07	30.2	0.0	3.6e-07	29.8	0.0	1.1	1	0	0	1	1	1	1	Rieske-like	[2Fe-2S]	domain
OrfB_Zn_ribbon	PF07282.6	gi|408405030|ref|YP_006863013.1|	-	0.11	12.1	0.0	0.17	11.5	0.0	1.3	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
DUF763	PF05559.6	gi|408405031|ref|YP_006863014.1|	-	1e-120	402.5	0.0	1.2e-120	402.3	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF763)
HHH	PF00633.18	gi|408405031|ref|YP_006863014.1|	-	9.6e-05	21.8	0.0	0.00022	20.7	0.0	1.5	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
SNARE_assoc	PF09335.6	gi|408405032|ref|YP_006863015.1|	-	8.6e-23	80.8	9.2	8.6e-23	80.8	6.4	2.5	2	1	2	4	4	4	1	SNARE	associated	Golgi	protein
Ldr_toxin	PF13940.1	gi|408405032|ref|YP_006863015.1|	-	0.32	10.8	1.8	1.2	8.9	0.7	2.2	2	0	0	2	2	2	0	Toxin	Ldr,	type	I	toxin-antitoxin	system
DUF92	PF01940.11	gi|408405032|ref|YP_006863015.1|	-	2.1	7.4	11.6	1.7	7.7	0.2	3.1	3	0	0	3	3	3	0	Integral	membrane	protein	DUF92
DUF204	PF02659.10	gi|408405032|ref|YP_006863015.1|	-	3.1	7.9	13.4	1.1	9.4	2.5	2.9	2	0	0	2	2	2	0	Domain	of	unknown	function	DUF
TcpE	PF12648.2	gi|408405032|ref|YP_006863015.1|	-	4.6	7.4	7.3	0.96	9.6	0.8	2.5	2	1	0	2	2	2	0	TcpE	family
OTCace_N	PF02729.16	gi|408405033|ref|YP_006863016.1|	-	1.1e-51	174.1	0.0	1.6e-51	173.6	0.0	1.2	1	0	0	1	1	1	1	Aspartate/ornithine	carbamoyltransferase,	carbamoyl-P	binding	domain
OTCace	PF00185.19	gi|408405033|ref|YP_006863016.1|	-	4.3e-50	169.6	0.0	6.5e-50	169.0	0.0	1.3	1	0	0	1	1	1	1	Aspartate/ornithine	carbamoyltransferase,	Asp/Orn	binding	domain
SRP54	PF00448.17	gi|408405034|ref|YP_006863017.1|	-	8.2e-70	234.2	0.4	1.5e-69	233.4	0.3	1.4	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
SRP54_N	PF02881.14	gi|408405034|ref|YP_006863017.1|	-	1.5e-08	34.6	4.9	1.5e-08	34.6	3.4	2.2	2	0	0	2	2	1	1	SRP54-type	protein,	helical	bundle	domain
AAA_30	PF13604.1	gi|408405034|ref|YP_006863017.1|	-	2.1e-06	27.4	0.3	4.2e-06	26.4	0.2	1.5	1	0	0	1	1	1	1	AAA	domain
CbiA	PF01656.18	gi|408405034|ref|YP_006863017.1|	-	8.8e-05	21.9	1.8	8.8e-05	21.9	1.3	2.2	2	1	0	2	2	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
MobB	PF03205.9	gi|408405034|ref|YP_006863017.1|	-	0.00044	19.9	0.3	0.00044	19.9	0.2	2.9	3	0	0	3	3	3	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_19	PF13245.1	gi|408405034|ref|YP_006863017.1|	-	0.00093	18.9	0.3	0.0017	18.0	0.2	1.4	1	0	0	1	1	1	1	Part	of	AAA	domain
APS_kinase	PF01583.15	gi|408405034|ref|YP_006863017.1|	-	0.001	18.7	0.3	0.0031	17.1	0.0	1.9	2	0	0	2	2	2	1	Adenylylsulphate	kinase
AAA	PF00004.24	gi|408405034|ref|YP_006863017.1|	-	0.003	17.7	0.4	0.0086	16.2	0.0	2.0	2	0	0	2	2	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_33	PF13671.1	gi|408405034|ref|YP_006863017.1|	-	0.0056	16.5	1.3	0.0076	16.1	0.0	1.9	2	0	0	2	2	1	1	AAA	domain
AAA_22	PF13401.1	gi|408405034|ref|YP_006863017.1|	-	0.0082	16.2	0.4	0.024	14.7	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
cobW	PF02492.14	gi|408405034|ref|YP_006863017.1|	-	0.011	15.1	0.5	0.011	15.1	0.3	1.8	2	1	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
LpxK	PF02606.9	gi|408405034|ref|YP_006863017.1|	-	0.012	14.5	0.1	0.023	13.6	0.0	1.5	1	0	0	1	1	1	0	Tetraacyldisaccharide-1-P	4'-kinase
DUF2075	PF09848.4	gi|408405034|ref|YP_006863017.1|	-	0.015	14.2	0.1	0.034	13.1	0.1	1.5	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
AAA_16	PF13191.1	gi|408405034|ref|YP_006863017.1|	-	0.016	15.1	0.7	0.041	13.8	0.1	1.9	1	1	1	2	2	2	0	AAA	ATPase	domain
Thymidylate_kin	PF02223.12	gi|408405034|ref|YP_006863017.1|	-	0.02	14.2	0.0	0.02	14.2	0.0	2.6	2	0	0	2	2	2	0	Thymidylate	kinase
LytR_C	PF13399.1	gi|408405034|ref|YP_006863017.1|	-	0.03	14.7	2.8	0.058	13.7	0.2	2.4	2	0	0	2	2	2	0	LytR	cell	envelope-related	transcriptional	attenuator
AAA_28	PF13521.1	gi|408405034|ref|YP_006863017.1|	-	0.036	14.0	0.0	0.036	14.0	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
6PF2K	PF01591.13	gi|408405034|ref|YP_006863017.1|	-	0.038	13.0	0.1	0.073	12.1	0.0	1.4	1	0	0	1	1	1	0	6-phosphofructo-2-kinase
Mur_ligase_M	PF08245.7	gi|408405034|ref|YP_006863017.1|	-	0.043	13.8	1.3	0.16	11.9	0.9	2.2	1	1	0	1	1	1	0	Mur	ligase	middle	domain
AAA_10	PF12846.2	gi|408405034|ref|YP_006863017.1|	-	0.057	12.8	0.7	0.087	12.2	0.0	1.6	2	0	0	2	2	2	0	AAA-like	domain
ArgK	PF03308.11	gi|408405034|ref|YP_006863017.1|	-	0.058	12.1	2.8	0.073	11.8	0.3	2.1	2	0	0	2	2	2	0	ArgK	protein
ABC_tran	PF00005.22	gi|408405034|ref|YP_006863017.1|	-	0.13	12.5	0.8	0.2	11.9	0.0	1.8	2	0	0	2	2	1	0	ABC	transporter
NTPase_1	PF03266.10	gi|408405034|ref|YP_006863017.1|	-	0.13	11.9	3.9	0.14	11.8	0.9	2.3	2	1	0	2	2	1	0	NTPase
AAA_17	PF13207.1	gi|408405034|ref|YP_006863017.1|	-	0.27	12.0	0.1	0.27	12.0	0.1	2.8	3	1	0	3	3	2	0	AAA	domain
SPOUT_MTase	PF02590.12	gi|408405034|ref|YP_006863017.1|	-	0.53	9.9	0.0	0.53	9.9	0.0	2.8	3	0	0	3	3	2	0	Predicted	SPOUT	methyltransferase
G-alpha	PF00503.15	gi|408405034|ref|YP_006863017.1|	-	0.67	8.5	11.2	0.98	8.0	0.0	2.3	2	0	0	2	2	2	0	G-protein	alpha	subunit
PAT1	PF09770.4	gi|408405034|ref|YP_006863017.1|	-	2.2	6.4	16.2	3.4	5.7	11.3	1.2	1	0	0	1	1	1	0	Topoisomerase	II-associated	protein	PAT1
DUF853	PF05872.7	gi|408405034|ref|YP_006863017.1|	-	5	5.3	9.8	0.38	9.0	0.2	2.3	2	0	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF853)
DUF1510	PF07423.6	gi|408405034|ref|YP_006863017.1|	-	8.8	5.6	18.0	18	4.6	12.5	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1510)
Prefoldin	PF02996.12	gi|408405035|ref|YP_006863018.1|	-	1.3e-18	66.7	3.1	2.2e-18	66.0	2.1	1.4	1	1	0	1	1	1	1	Prefoldin	subunit
Prefoldin_2	PF01920.15	gi|408405035|ref|YP_006863018.1|	-	0.0052	16.5	2.0	0.0052	16.5	1.4	2.5	1	1	1	2	2	2	1	Prefoldin	subunit
FNIP_C	PF14638.1	gi|408405035|ref|YP_006863018.1|	-	0.052	12.8	0.3	0.089	12.1	0.2	1.5	1	0	0	1	1	1	0	Folliculin-interacting	protein	C-terminus
Med4	PF10018.4	gi|408405035|ref|YP_006863018.1|	-	0.059	12.7	2.9	1.7	7.9	0.9	2.1	2	0	0	2	2	2	0	Vitamin-D-receptor	interacting	Mediator	subunit	4
Ribosomal_L5	PF00281.14	gi|408405035|ref|YP_006863018.1|	-	0.1	12.4	0.2	0.45	10.3	0.0	2.0	2	1	0	2	2	2	0	Ribosomal	protein	L5
DUF3287	PF11690.3	gi|408405035|ref|YP_006863018.1|	-	0.1	12.6	0.3	0.1	12.6	0.2	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3287)
CDC37_N	PF03234.9	gi|408405035|ref|YP_006863018.1|	-	0.22	11.8	4.0	0.28	11.5	2.8	1.1	1	0	0	1	1	1	0	Cdc37	N	terminal	kinase	binding
DMPK_coil	PF08826.5	gi|408405035|ref|YP_006863018.1|	-	0.26	11.2	9.8	0.15	11.9	2.1	2.8	2	1	1	3	3	3	0	DMPK	coiled	coil	domain	like
Ax_dynein_light	PF10211.4	gi|408405035|ref|YP_006863018.1|	-	0.33	10.7	8.6	0.052	13.3	1.5	2.0	2	0	0	2	2	2	0	Axonemal	dynein	light	chain
Mod_r	PF07200.8	gi|408405035|ref|YP_006863018.1|	-	0.35	10.7	6.1	0.13	12.2	0.8	2.0	2	0	0	2	2	2	0	Modifier	of	rudimentary	(Mod(r))	protein
Talin_middle	PF09141.5	gi|408405035|ref|YP_006863018.1|	-	0.4	10.3	4.1	1.8	8.2	0.5	2.2	1	1	0	2	2	2	0	Talin,	middle	domain
DUF2968	PF11180.3	gi|408405035|ref|YP_006863018.1|	-	1.3	8.3	10.4	0.046	13.0	2.3	1.9	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2968)
Seryl_tRNA_N	PF02403.17	gi|408405035|ref|YP_006863018.1|	-	1.7	8.6	6.7	1.2	9.1	1.2	2.3	2	1	0	2	2	2	0	Seryl-tRNA	synthetase	N-terminal	domain
DUF972	PF06156.8	gi|408405035|ref|YP_006863018.1|	-	2.2	8.6	5.6	10	6.5	0.3	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF972)
DUF4200	PF13863.1	gi|408405035|ref|YP_006863018.1|	-	5.8	6.8	12.9	1.3	8.9	4.8	2.3	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4200)
YlqD	PF11068.3	gi|408405035|ref|YP_006863018.1|	-	9.6	6.2	14.5	19	5.3	0.5	2.2	1	1	1	2	2	2	0	YlqD	protein
NAD_binding_2	PF03446.10	gi|408405036|ref|YP_006863019.1|	-	0.039	13.7	0.1	0.06	13.1	0.0	1.3	1	0	0	1	1	1	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
DUF2917	PF11142.3	gi|408405036|ref|YP_006863019.1|	-	0.17	11.0	0.0	0.32	10.1	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2917)
tRNA-synt_1	PF00133.17	gi|408405038|ref|YP_006863021.1|	-	5.1e-70	236.1	1.3	2.1e-68	230.8	0.9	2.5	1	1	0	1	1	1	1	tRNA	synthetases	class	I	(I,	L,	M	and	V)
tRNA-synt_1g	PF09334.6	gi|408405038|ref|YP_006863021.1|	-	1.4e-26	93.0	2.6	7.4e-12	44.6	0.1	3.9	3	1	1	4	4	4	2	tRNA	synthetases	class	I	(M)
Anticodon_1	PF08264.8	gi|408405038|ref|YP_006863021.1|	-	1.3e-22	80.2	0.1	3.7e-22	78.7	0.1	1.8	1	0	0	1	1	1	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1_2	PF13603.1	gi|408405038|ref|YP_006863021.1|	-	1.6e-13	50.3	0.1	8.3e-13	48.0	0.0	2.1	1	1	1	2	2	2	1	Leucyl-tRNA	synthetase,	Domain	2
tRNA-synt_1e	PF01406.14	gi|408405038|ref|YP_006863021.1|	-	7.9e-13	48.1	0.1	5.4e-08	32.3	0.0	2.5	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(C)	catalytic	domain
HTH_23	PF13384.1	gi|408405038|ref|YP_006863021.1|	-	0.082	12.5	0.2	1	9.1	0.0	2.8	3	0	0	3	3	3	0	Homeodomain-like	domain
tRNA-synt_2c	PF01411.14	gi|408405039|ref|YP_006863022.1|	-	3.3e-83	279.8	0.0	1.2e-82	278.0	0.0	1.8	1	1	0	1	1	1	1	tRNA	synthetases	class	II	(A)
tRNA_SAD	PF07973.9	gi|408405039|ref|YP_006863022.1|	-	2.5e-16	59.2	7.0	1.2e-15	57.0	0.8	3.5	3	0	0	3	3	3	1	Threonyl	and	Alanyl	tRNA	synthetase	second	additional	domain
DHHA1	PF02272.14	gi|408405039|ref|YP_006863022.1|	-	0.0018	17.9	4.7	0.0046	16.6	3.2	1.7	1	0	0	1	1	1	1	DHHA1	domain
RsbU_N	PF08673.5	gi|408405039|ref|YP_006863022.1|	-	0.038	14.0	0.0	0.14	12.1	0.0	2.0	1	0	0	1	1	1	0	Phosphoserine	phosphatase	RsbU,	N-terminal	domain
Thioredoxin	PF00085.15	gi|408405040|ref|YP_006863023.1|	-	4.1e-30	103.5	0.0	4.8e-30	103.3	0.0	1.1	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_2	PF13098.1	gi|408405040|ref|YP_006863023.1|	-	3.2e-10	40.1	0.0	1.5e-09	38.0	0.0	1.9	1	1	0	1	1	1	1	Thioredoxin-like	domain
Thioredoxin_8	PF13905.1	gi|408405040|ref|YP_006863023.1|	-	8.6e-08	32.2	0.0	0.00011	22.2	0.0	2.3	1	1	1	2	2	2	2	Thioredoxin-like
Thioredoxin_7	PF13899.1	gi|408405040|ref|YP_006863023.1|	-	5.4e-06	26.3	0.0	7.5e-06	25.8	0.0	1.2	1	0	0	1	1	1	1	Thioredoxin-like
Thioredoxin_9	PF14595.1	gi|408405040|ref|YP_006863023.1|	-	5.5e-06	25.9	0.0	7e-06	25.6	0.0	1.2	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_3	PF13192.1	gi|408405040|ref|YP_006863023.1|	-	1.4e-05	24.8	0.0	1.9e-05	24.3	0.0	1.3	1	0	0	1	1	1	1	Thioredoxin	domain
AhpC-TSA	PF00578.16	gi|408405040|ref|YP_006863023.1|	-	0.0014	18.3	0.0	0.0034	17.0	0.0	1.5	1	1	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.5	gi|408405040|ref|YP_006863023.1|	-	0.0016	18.0	0.0	0.002	17.6	0.0	1.2	1	0	0	1	1	1	1	Redoxin
HyaE	PF07449.6	gi|408405040|ref|YP_006863023.1|	-	0.047	13.5	0.0	0.072	12.9	0.0	1.3	1	0	0	1	1	1	0	Hydrogenase-1	expression	protein	HyaE
DUF836	PF05768.9	gi|408405040|ref|YP_006863023.1|	-	0.1	12.8	0.0	0.13	12.4	0.0	1.3	1	0	0	1	1	1	0	Glutaredoxin-like	domain	(DUF836)
TrbC_Ftype	PF09673.5	gi|408405040|ref|YP_006863023.1|	-	0.13	11.9	0.0	0.17	11.4	0.0	1.2	1	0	0	1	1	1	0	Type-F	conjugative	transfer	system	pilin	assembly	protein
CCDC84	PF14968.1	gi|408405041|ref|YP_006863024.1|	-	0.078	12.4	0.1	0.086	12.3	0.0	1.1	1	0	0	1	1	1	0	Coiled	coil	protein	84
AsnC_trans_reg	PF01037.16	gi|408405042|ref|YP_006863025.1|	-	1.8e-13	49.9	0.1	2.8e-13	49.3	0.0	1.3	1	0	0	1	1	1	1	AsnC	family
HTH_24	PF13412.1	gi|408405042|ref|YP_006863025.1|	-	2.7e-07	29.8	0.8	5e-07	29.0	0.5	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.1	gi|408405042|ref|YP_006863025.1|	-	4.7e-06	26.0	0.2	8.4e-06	25.2	0.2	1.4	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
B-block_TFIIIC	PF04182.7	gi|408405042|ref|YP_006863025.1|	-	0.004	16.9	0.1	0.0058	16.4	0.0	1.4	1	0	0	1	1	1	1	B-block	binding	subunit	of	TFIIIC
HTH_11	PF08279.7	gi|408405042|ref|YP_006863025.1|	-	0.0044	16.6	0.3	0.0098	15.5	0.2	1.6	1	0	0	1	1	1	1	HTH	domain
HTH_20	PF12840.2	gi|408405042|ref|YP_006863025.1|	-	0.0064	16.2	0.1	0.024	14.4	0.0	1.8	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_34	PF13601.1	gi|408405042|ref|YP_006863025.1|	-	0.015	15.3	0.3	0.084	12.9	0.1	2.0	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
HTH_psq	PF05225.11	gi|408405042|ref|YP_006863025.1|	-	0.019	14.5	0.2	0.032	13.7	0.1	1.4	1	0	0	1	1	1	0	helix-turn-helix,	Psq	domain
MarR	PF01047.17	gi|408405042|ref|YP_006863025.1|	-	0.022	14.4	0.2	0.043	13.5	0.1	1.5	1	0	0	1	1	1	0	MarR	family
HTH_27	PF13463.1	gi|408405042|ref|YP_006863025.1|	-	0.053	13.8	0.1	0.11	12.8	0.0	1.5	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
Sulfolobus_pRN	PF05584.6	gi|408405042|ref|YP_006863025.1|	-	0.061	13.3	1.0	0.49	10.3	0.2	2.2	2	1	0	2	2	2	0	Sulfolobus	plasmid	regulatory	protein
Ribosomal_S25	PF03297.10	gi|408405042|ref|YP_006863025.1|	-	0.068	13.2	1.7	0.23	11.5	0.5	2.0	2	0	0	2	2	2	0	S25	ribosomal	protein
MarR_2	PF12802.2	gi|408405042|ref|YP_006863025.1|	-	0.091	12.4	0.1	0.15	11.7	0.1	1.3	1	0	0	1	1	1	0	MarR	family
Shikimate_DH	PF01488.15	gi|408405042|ref|YP_006863025.1|	-	0.092	12.8	0.2	0.12	12.4	0.2	1.3	1	0	0	1	1	1	0	Shikimate	/	quinate	5-dehydrogenase
Rrf2	PF02082.15	gi|408405042|ref|YP_006863025.1|	-	0.12	12.5	0.1	0.23	11.6	0.1	1.5	1	0	0	1	1	1	0	Transcriptional	regulator
HNH_3	PF13392.1	gi|408405044|ref|YP_006863027.1|	-	0.0049	16.2	0.0	0.0079	15.5	0.0	1.4	1	0	0	1	1	1	1	HNH	endonuclease
UPF0547	PF10571.4	gi|408405044|ref|YP_006863027.1|	-	0.0069	16.0	0.4	0.28	10.9	0.0	2.2	2	0	0	2	2	2	1	Uncharacterised	protein	family	UPF0547
Terminase_GpA	PF05876.7	gi|408405044|ref|YP_006863027.1|	-	0.011	14.1	0.1	0.012	14.0	0.1	1.0	1	0	0	1	1	1	0	Phage	terminase	large	subunit	(GpA)
HNH	PF01844.18	gi|408405044|ref|YP_006863027.1|	-	0.014	15.2	0.2	0.023	14.5	0.1	1.4	1	0	0	1	1	1	0	HNH	endonuclease
Baculo_ME53	PF06061.6	gi|408405044|ref|YP_006863027.1|	-	0.038	12.9	1.6	0.045	12.7	1.1	1.1	1	0	0	1	1	1	0	Baculoviridae	ME53
zf-C2H2_3	PF13878.1	gi|408405044|ref|YP_006863027.1|	-	0.13	11.9	0.3	0.28	10.8	0.0	1.8	2	0	0	2	2	2	0	zinc-finger	of	acetyl-transferase	ESCO
Nudix_N_2	PF14803.1	gi|408405044|ref|YP_006863027.1|	-	0.13	11.9	1.4	8.9	6.1	0.2	2.5	2	0	0	2	2	2	0	Nudix	N-terminal
DZR	PF12773.2	gi|408405044|ref|YP_006863027.1|	-	0.31	10.8	3.9	0.72	9.7	2.7	1.5	1	1	0	1	1	1	0	Double	zinc	ribbon
zf-CCHC_3	PF13917.1	gi|408405044|ref|YP_006863027.1|	-	0.88	9.3	3.9	0.72	9.6	0.9	2.1	2	0	0	2	2	2	0	Zinc	knuckle
zf-HYPF	PF07503.7	gi|408405044|ref|YP_006863027.1|	-	4.2	6.8	5.4	10	5.6	0.6	2.3	2	0	0	2	2	2	0	HypF	finger
Chordopox_RPO7	PF05864.7	gi|408405045|ref|YP_006863028.1|	-	0.016	15.3	0.1	0.021	14.8	0.1	1.4	1	1	0	1	1	1	0	Chordopoxvirus	DNA-directed	RNA	polymerase	7	kDa	polypeptide	(RPO7)
HTH_45	PF14947.1	gi|408405046|ref|YP_006863029.1|	-	6.1e-14	51.6	0.1	7.1e-14	51.3	0.1	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
PadR	PF03551.9	gi|408405046|ref|YP_006863029.1|	-	0.0023	17.6	0.3	0.0041	16.8	0.1	1.5	2	0	0	2	2	2	1	Transcriptional	regulator	PadR-like	family
DUF4364	PF14277.1	gi|408405046|ref|YP_006863029.1|	-	0.0037	16.8	0.0	0.0047	16.5	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4364)
Mrr_N	PF14338.1	gi|408405046|ref|YP_006863029.1|	-	0.0041	17.1	0.0	0.0052	16.8	0.0	1.4	1	0	0	1	1	1	1	Mrr	N-terminal	domain
TrmB	PF01978.14	gi|408405046|ref|YP_006863029.1|	-	0.007	16.0	0.0	0.011	15.4	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
DUF1495	PF07381.6	gi|408405046|ref|YP_006863029.1|	-	0.035	13.7	0.1	0.052	13.2	0.0	1.4	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain	(DUF1495)
HTH_34	PF13601.1	gi|408405046|ref|YP_006863029.1|	-	0.054	13.5	0.0	0.073	13.1	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
Rrf2	PF02082.15	gi|408405046|ref|YP_006863029.1|	-	0.09	12.9	0.0	0.19	11.8	0.0	1.6	1	0	0	1	1	1	0	Transcriptional	regulator
MarR	PF01047.17	gi|408405046|ref|YP_006863029.1|	-	0.11	12.2	0.0	0.19	11.4	0.0	1.4	1	0	0	1	1	1	0	MarR	family
SIMPL	PF04402.9	gi|408405047|ref|YP_006863030.1|	-	1.2e-44	152.7	9.5	1.2e-44	152.7	6.6	1.4	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF541)
DUF1657	PF07870.6	gi|408405047|ref|YP_006863030.1|	-	0.0034	17.0	0.1	0.0088	15.7	0.1	1.7	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1657)
PRTP	PF01366.13	gi|408405047|ref|YP_006863030.1|	-	0.039	11.9	0.1	0.048	11.6	0.1	1.0	1	0	0	1	1	1	0	Herpesvirus	processing	and	transport	protein
DUF2564	PF10819.3	gi|408405047|ref|YP_006863030.1|	-	3.7	7.7	10.2	2	8.5	0.9	3.1	2	2	1	3	3	3	0	Protein	of	unknown	function	(DUF2564)
CxxCxxCC	PF03692.10	gi|408405049|ref|YP_006863032.1|	-	3e-09	37.2	0.0	6.3e-09	36.1	0.0	1.6	1	1	0	1	1	1	1	Putative	zinc-	or	iron-chelating	domain
DUF504	PF04457.7	gi|408405050|ref|YP_006863033.1|	-	0.0037	17.3	0.0	0.0062	16.6	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF504)
ChaB	PF06150.7	gi|408405051|ref|YP_006863034.1|	-	5.6e-17	61.2	1.7	7.6e-17	60.8	1.2	1.2	1	0	0	1	1	1	1	ChaB
Tombus_movement	PF05318.7	gi|408405051|ref|YP_006863034.1|	-	8.3	7.1	8.9	1.1	9.9	2.4	2.0	1	1	1	2	2	2	0	Tombusvirus	movement	protein
Aconitase_C	PF00694.14	gi|408405052|ref|YP_006863035.1|	-	6.7e-23	81.2	0.1	3.2e-21	75.7	0.0	2.4	2	1	0	2	2	2	1	Aconitase	C-terminal	domain
Aconitase_2_N	PF06434.8	gi|408405052|ref|YP_006863035.1|	-	0.0077	15.6	0.1	0.039	13.3	0.0	1.9	1	1	0	1	1	1	1	Aconitate	hydratase	2	N-terminus
Aconitase	PF00330.15	gi|408405053|ref|YP_006863036.1|	-	1e-78	264.9	3.9	1.8e-51	175.0	0.3	2.2	1	1	1	2	2	2	2	Aconitase	family	(aconitate	hydratase)
DUF521	PF04412.8	gi|408405053|ref|YP_006863036.1|	-	0.0043	15.6	0.0	0.0066	15.0	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF521)
F420_ligase	PF01996.11	gi|408405054|ref|YP_006863037.1|	-	4.1e-57	192.8	0.0	5.1e-57	192.5	0.0	1.0	1	0	0	1	1	1	1	F420-0:Gamma-glutamyl	ligase
DUF2854	PF11016.3	gi|408405057|ref|YP_006863040.1|	-	0.057	12.9	0.1	0.17	11.4	0.0	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2854)
DUF1628	PF07790.6	gi|408405058|ref|YP_006863041.1|	-	0.017	15.8	0.5	0.028	15.1	0.3	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1628)
GH97_C	PF14509.1	gi|408405059|ref|YP_006863042.1|	-	0.0051	16.8	0.2	0.027	14.5	0.0	2.2	2	0	0	2	2	2	1	Glycosyl-hydrolase	97	C-terminal,	oligomerisation
DUF1628	PF07790.6	gi|408405059|ref|YP_006863042.1|	-	0.049	14.3	0.9	0.049	14.3	0.6	2.8	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF1628)
OrfB_Zn_ribbon	PF07282.6	gi|408405060|ref|YP_006863043.1|	-	2.8e-23	81.3	0.8	3.9e-23	80.8	0.6	1.2	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
Ribosomal_L37ae	PF01780.14	gi|408405060|ref|YP_006863043.1|	-	0.0089	15.8	0.4	0.013	15.3	0.3	1.3	1	0	0	1	1	1	1	Ribosomal	L37ae	protein	family
DZR	PF12773.2	gi|408405060|ref|YP_006863043.1|	-	0.022	14.5	1.8	0.037	13.8	1.3	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
TF_Zn_Ribbon	PF08271.7	gi|408405060|ref|YP_006863043.1|	-	0.042	13.1	3.7	0.073	12.4	2.6	1.4	1	0	0	1	1	1	0	TFIIB	zinc-binding
Zn_Tnp_IS1595	PF12760.2	gi|408405060|ref|YP_006863043.1|	-	0.096	12.5	3.4	0.23	11.3	2.3	1.6	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
A2L_zn_ribbon	PF08792.5	gi|408405060|ref|YP_006863043.1|	-	0.12	11.8	4.8	0.26	10.7	3.3	1.6	1	1	0	1	1	1	0	A2L	zinc	ribbon	domain
zf-C2H2	PF00096.21	gi|408405060|ref|YP_006863043.1|	-	2.1	8.8	7.8	1.7	9.1	1.5	2.6	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
PhnA_Zn_Ribbon	PF08274.7	gi|408405060|ref|YP_006863043.1|	-	2.2	8.1	6.1	0.44	10.3	0.9	2.2	2	1	0	2	2	2	0	PhnA	Zinc-Ribbon
UbiA	PF01040.13	gi|408405061|ref|YP_006863044.1|	-	7.9e-36	123.5	13.4	1.1e-35	123.1	9.3	1.2	1	0	0	1	1	1	1	UbiA	prenyltransferase	family
HTH_45	PF14947.1	gi|408405062|ref|YP_006863045.1|	-	0.00096	18.9	0.1	0.0027	17.4	0.1	1.7	1	0	0	1	1	1	1	Winged	helix-turn-helix
MTH865	PF07747.6	gi|408405062|ref|YP_006863045.1|	-	0.12	12.0	0.0	0.25	11.0	0.0	1.5	1	0	0	1	1	1	0	MTH865-like	family
Abhydrolase_6	PF12697.2	gi|408405063|ref|YP_006863046.1|	-	1.4e-26	93.7	0.0	1.7e-26	93.4	0.0	1.0	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_5	PF12695.2	gi|408405063|ref|YP_006863046.1|	-	9.7e-22	77.2	0.0	1.4e-21	76.7	0.0	1.2	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_1	PF00561.15	gi|408405063|ref|YP_006863046.1|	-	8e-12	45.1	0.1	8.5e-11	41.8	0.0	2.0	1	1	0	1	1	1	1	alpha/beta	hydrolase	fold
Hydrolase_4	PF12146.3	gi|408405063|ref|YP_006863046.1|	-	1.4e-11	44.0	0.0	1.1e-10	41.2	0.0	2.2	1	1	1	2	2	2	1	Putative	lysophospholipase
Peptidase_S9	PF00326.16	gi|408405063|ref|YP_006863046.1|	-	2.1e-05	23.8	0.0	0.00059	19.1	0.0	2.2	2	0	0	2	2	2	1	Prolyl	oligopeptidase	family
DUF2305	PF10230.4	gi|408405063|ref|YP_006863046.1|	-	0.00037	20.0	0.0	0.0012	18.2	0.0	1.7	2	0	0	2	2	2	1	Uncharacterised	conserved	protein	(DUF2305)
DUF1057	PF06342.7	gi|408405063|ref|YP_006863046.1|	-	0.0056	15.5	0.0	0.0083	14.9	0.0	1.2	1	0	0	1	1	1	1	Alpha/beta	hydrolase	of	unknown	function	(DUF1057)
Abhydrolase_2	PF02230.11	gi|408405063|ref|YP_006863046.1|	-	0.0085	15.5	0.0	0.12	11.8	0.0	2.5	3	0	0	3	3	3	1	Phospholipase/Carboxylesterase
Ser_hydrolase	PF06821.8	gi|408405063|ref|YP_006863046.1|	-	0.011	15.3	0.0	0.025	14.2	0.0	1.6	2	0	0	2	2	2	0	Serine	hydrolase
PGAP1	PF07819.8	gi|408405063|ref|YP_006863046.1|	-	0.015	14.9	0.0	0.067	12.7	0.0	1.9	2	0	0	2	2	2	0	PGAP1-like	protein
FSH1	PF03959.8	gi|408405063|ref|YP_006863046.1|	-	0.048	13.0	0.0	5.2	6.4	0.0	2.9	2	1	0	2	2	2	0	Serine	hydrolase	(FSH1)
Abhydro_lipase	PF04083.11	gi|408405063|ref|YP_006863046.1|	-	0.082	12.2	0.0	2.1	7.7	0.0	2.8	3	0	0	3	3	3	0	Partial	alpha/beta-hydrolase	lipase	region
Phage_AlpA	PF05930.7	gi|408405063|ref|YP_006863046.1|	-	0.089	12.5	0.0	0.19	11.4	0.0	1.5	1	0	0	1	1	1	0	Prophage	CP4-57	regulatory	protein	(AlpA)
DUF900	PF05990.7	gi|408405063|ref|YP_006863046.1|	-	0.11	11.8	0.0	0.44	9.8	0.0	1.9	2	0	0	2	2	2	0	Alpha/beta	hydrolase	of	unknown	function	(DUF900)
LCAT	PF02450.10	gi|408405063|ref|YP_006863046.1|	-	0.11	11.4	0.0	0.18	10.7	0.0	1.2	1	0	0	1	1	1	0	Lecithin:cholesterol	acyltransferase
Methyltransf_31	PF13847.1	gi|408405064|ref|YP_006863047.1|	-	2.9e-19	69.1	0.0	5.2e-19	68.3	0.0	1.4	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_11	PF08241.7	gi|408405064|ref|YP_006863047.1|	-	7e-18	64.9	0.1	1.1e-17	64.2	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|408405064|ref|YP_006863047.1|	-	5.2e-15	55.5	0.0	7.8e-15	54.9	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|408405064|ref|YP_006863047.1|	-	3.7e-13	50.0	0.1	7.6e-13	49.0	0.0	1.5	2	0	0	2	2	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|408405064|ref|YP_006863047.1|	-	2.5e-12	47.1	0.0	4.2e-12	46.3	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|408405064|ref|YP_006863047.1|	-	6.8e-12	45.6	0.1	1.1e-11	44.9	0.1	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.13	gi|408405064|ref|YP_006863047.1|	-	1.1e-09	37.8	0.0	1.6e-09	37.2	0.0	1.2	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_26	PF13659.1	gi|408405064|ref|YP_006863047.1|	-	2e-07	31.0	0.0	2.8e-07	30.5	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.9	gi|408405064|ref|YP_006863047.1|	-	2.1e-06	27.2	0.0	3.3e-06	26.5	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
PCMT	PF01135.14	gi|408405064|ref|YP_006863047.1|	-	5.5e-06	26.0	0.0	6.9e-06	25.7	0.0	1.2	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
CMAS	PF02353.15	gi|408405064|ref|YP_006863047.1|	-	2.4e-05	23.5	0.0	3.5e-05	23.0	0.0	1.2	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
FtsJ	PF01728.14	gi|408405064|ref|YP_006863047.1|	-	6.5e-05	22.9	0.1	0.0002	21.4	0.0	1.8	1	1	0	1	1	1	1	FtsJ-like	methyltransferase
Methyltransf_9	PF08003.6	gi|408405064|ref|YP_006863047.1|	-	0.00043	19.0	0.0	0.00062	18.5	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1698)
GCD14	PF08704.5	gi|408405064|ref|YP_006863047.1|	-	0.0028	17.1	0.1	0.017	14.6	0.0	1.9	2	0	0	2	2	2	1	tRNA	methyltransferase	complex	GCD14	subunit
Methyltransf_24	PF13578.1	gi|408405064|ref|YP_006863047.1|	-	0.0079	17.0	0.0	0.013	16.3	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
PrmA	PF06325.8	gi|408405064|ref|YP_006863047.1|	-	0.0089	15.1	0.0	0.012	14.7	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
RrnaAD	PF00398.15	gi|408405064|ref|YP_006863047.1|	-	0.009	15.0	0.0	0.013	14.5	0.0	1.3	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
Methyltransf_32	PF13679.1	gi|408405064|ref|YP_006863047.1|	-	0.011	15.4	0.0	0.015	15.0	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
MetW	PF07021.7	gi|408405064|ref|YP_006863047.1|	-	0.013	14.9	0.1	0.019	14.3	0.1	1.2	1	0	0	1	1	1	0	Methionine	biosynthesis	protein	MetW
GidB	PF02527.10	gi|408405064|ref|YP_006863047.1|	-	0.025	13.7	0.1	0.067	12.3	0.1	1.8	1	1	0	1	1	1	0	rRNA	small	subunit	methyltransferase	G
Peptidase_U57	PF05582.7	gi|408405064|ref|YP_006863047.1|	-	0.09	11.7	0.0	0.13	11.2	0.0	1.2	1	0	0	1	1	1	0	YabG	peptidase	U57
PHO4	PF01384.15	gi|408405066|ref|YP_006863049.1|	-	1.4e-28	99.4	8.9	1.6e-28	99.3	6.2	1.0	1	0	0	1	1	1	1	Phosphate	transporter	family
PhoU_div	PF01865.11	gi|408405067|ref|YP_006863050.1|	-	2.8e-22	78.9	5.2	3.4e-22	78.6	3.6	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF47
DUF310	PF03750.8	gi|408405067|ref|YP_006863050.1|	-	0.047	13.8	0.4	0.83	9.8	0.0	2.4	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF310)
COLFI	PF01410.13	gi|408405067|ref|YP_006863050.1|	-	0.11	11.9	0.0	0.13	11.6	0.0	1.2	1	0	0	1	1	1	0	Fibrillar	collagen	C-terminal	domain
zf-AD	PF07776.10	gi|408405068|ref|YP_006863051.1|	-	0.046	13.7	0.1	0.09	12.7	0.1	1.4	1	0	0	1	1	1	0	Zinc-finger	associated	domain	(zf-AD)
A2L_zn_ribbon	PF08792.5	gi|408405068|ref|YP_006863051.1|	-	0.059	12.8	0.1	0.12	11.8	0.1	1.5	1	0	0	1	1	1	0	A2L	zinc	ribbon	domain
zf-C2H2_4	PF13894.1	gi|408405068|ref|YP_006863051.1|	-	0.23	11.8	1.8	1	9.8	0.4	2.1	2	0	0	2	2	2	0	C2H2-type	zinc	finger
zf-C2H2	PF00096.21	gi|408405068|ref|YP_006863051.1|	-	0.38	11.2	3.5	0.33	11.3	1.0	1.9	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
DZR	PF12773.2	gi|408405069|ref|YP_006863052.1|	-	6.6e-12	45.0	31.3	6.4e-08	32.2	7.6	2.0	1	1	2	3	3	3	3	Double	zinc	ribbon
bPH_3	PF14470.1	gi|408405069|ref|YP_006863052.1|	-	1.1e-11	44.8	0.0	1.7e-11	44.2	0.0	1.3	1	0	0	1	1	1	1	Bacterial	PH	domain
zf-ribbon_3	PF13248.1	gi|408405069|ref|YP_006863052.1|	-	2.8e-08	32.7	11.7	7.8e-05	21.7	0.8	2.3	2	0	0	2	2	2	2	zinc-ribbon	domain
zinc_ribbon_2	PF13240.1	gi|408405069|ref|YP_006863052.1|	-	8.5e-06	25.0	10.7	0.0046	16.4	2.4	2.4	2	0	0	2	2	2	2	zinc-ribbon	domain
zf-DHHC	PF01529.15	gi|408405069|ref|YP_006863052.1|	-	1.2e-05	24.8	5.9	0.00094	18.6	0.1	2.1	1	1	1	2	2	2	2	DHHC	palmitoyltransferase
UPF0547	PF10571.4	gi|408405069|ref|YP_006863052.1|	-	0.00079	19.0	13.9	0.011	15.4	1.5	2.8	2	1	0	2	2	2	2	Uncharacterised	protein	family	UPF0547
zf-NADH-PPase	PF09297.6	gi|408405069|ref|YP_006863052.1|	-	0.0017	17.8	3.7	0.0022	17.4	0.2	2.4	2	0	0	2	2	2	1	NADH	pyrophosphatase	zinc	ribbon	domain
Helicase_IV_N	PF12462.3	gi|408405069|ref|YP_006863052.1|	-	0.002	17.8	0.0	0.0026	17.4	0.0	1.2	1	0	0	1	1	1	1	DNA	helicase	IV	/	RNA	helicase	N	terminal
bPH_1	PF08000.6	gi|408405069|ref|YP_006863052.1|	-	0.015	14.9	0.1	0.052	13.1	0.0	1.9	1	1	0	1	1	1	0	Bacterial	PH	domain
NOB1_Zn_bind	PF08772.6	gi|408405069|ref|YP_006863052.1|	-	0.22	11.3	12.0	0.17	11.7	1.8	2.4	1	1	1	2	2	2	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
zf-dskA_traR	PF01258.12	gi|408405069|ref|YP_006863052.1|	-	0.27	11.0	3.0	15	5.4	0.1	3.1	2	1	1	3	3	3	0	Prokaryotic	dksA/traR	C4-type	zinc	finger
zf-TRM13_CCCH	PF11722.3	gi|408405069|ref|YP_006863052.1|	-	0.36	10.2	2.6	0.53	9.7	0.6	2.0	2	0	0	2	2	2	0	CCCH	zinc	finger	in	TRM13	protein
Prok-RING_1	PF14446.1	gi|408405069|ref|YP_006863052.1|	-	0.87	9.3	12.2	0.22	11.2	1.7	2.6	1	1	2	3	3	3	0	Prokaryotic	RING	finger	family	1
PhnA_Zn_Ribbon	PF08274.7	gi|408405069|ref|YP_006863052.1|	-	1	9.1	3.9	2	8.2	0.5	2.3	2	0	0	2	2	2	0	PhnA	Zinc-Ribbon
HNH	PF01844.18	gi|408405069|ref|YP_006863052.1|	-	1.2	9.1	6.9	6.2	6.7	0.0	3.4	2	1	0	2	2	2	0	HNH	endonuclease
DNA_ligase_ZBD	PF03119.11	gi|408405069|ref|YP_006863052.1|	-	1.2	8.9	4.6	8.5	6.1	0.1	2.6	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
PLATZ	PF04640.9	gi|408405069|ref|YP_006863052.1|	-	1.2	9.3	5.4	3.8	7.7	0.2	2.6	1	1	1	2	2	2	0	PLATZ	transcription	factor
HypA	PF01155.14	gi|408405069|ref|YP_006863052.1|	-	1.6	8.4	9.9	8.9	6.0	6.9	2.3	1	1	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
zf-RING_3	PF14369.1	gi|408405069|ref|YP_006863052.1|	-	4.3	7.4	14.6	1.4	8.9	1.5	3.5	1	1	2	3	3	3	0	zinc-finger
DUF2616	PF11077.3	gi|408405069|ref|YP_006863052.1|	-	4.8	6.6	11.0	1.4	8.3	1.1	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2616)
OrfB_Zn_ribbon	PF07282.6	gi|408405069|ref|YP_006863052.1|	-	8.3	6.1	9.4	60	3.3	6.1	2.6	1	1	1	2	2	2	0	Putative	transposase	DNA-binding	domain
N6_N4_Mtase	PF01555.13	gi|408405073|ref|YP_006863056.1|	-	2.9e-50	170.9	0.1	2.8e-49	167.7	0.0	1.9	1	1	0	1	1	1	1	DNA	methylase
Methyltransf_26	PF13659.1	gi|408405073|ref|YP_006863056.1|	-	8.7e-16	58.0	0.0	2.4e-07	30.7	0.0	2.3	2	0	0	2	2	2	2	Methyltransferase	domain
UPF0020	PF01170.13	gi|408405073|ref|YP_006863056.1|	-	1.5e-05	24.6	0.0	0.0012	18.4	0.0	2.4	2	0	0	2	2	2	1	Putative	RNA	methylase	family	UPF0020
MTS	PF05175.9	gi|408405073|ref|YP_006863056.1|	-	3.8e-05	23.1	0.0	0.0016	17.8	0.0	2.2	2	0	0	2	2	2	1	Methyltransferase	small	domain
Cons_hypoth95	PF03602.10	gi|408405073|ref|YP_006863056.1|	-	0.0016	17.8	0.0	0.035	13.5	0.0	2.2	2	0	0	2	2	2	1	Conserved	hypothetical	protein	95
Methyltransf_18	PF12847.2	gi|408405073|ref|YP_006863056.1|	-	0.0033	17.9	0.0	0.21	12.1	0.0	2.5	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|408405073|ref|YP_006863056.1|	-	0.005	16.4	0.0	0.013	15.1	0.0	1.6	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_15	PF09445.5	gi|408405073|ref|YP_006863056.1|	-	0.017	14.6	0.0	0.49	9.9	0.0	2.4	2	0	0	2	2	2	0	RNA	cap	guanine-N2	methyltransferase
Methyltransf_23	PF13489.1	gi|408405073|ref|YP_006863056.1|	-	0.06	13.0	0.0	4.6	6.9	0.0	2.4	2	0	0	2	2	2	0	Methyltransferase	domain
Nitroreductase	PF00881.19	gi|408405074|ref|YP_006863057.1|	-	1.3e-25	90.1	0.1	3.7e-25	88.6	0.1	1.7	1	1	0	1	1	1	1	Nitroreductase	family
Methyltransf_4	PF02390.12	gi|408405075|ref|YP_006863058.1|	-	1.6e-07	30.6	0.0	4.2e-07	29.2	0.0	1.6	1	1	0	1	1	1	1	Putative	methyltransferase
HD	PF01966.17	gi|408405075|ref|YP_006863058.1|	-	0.029	14.3	0.0	0.084	12.8	0.0	1.8	1	0	0	1	1	1	0	HD	domain
PDEase_I	PF00233.14	gi|408405075|ref|YP_006863058.1|	-	0.044	13.5	0.1	1.3	8.6	0.0	2.2	2	0	0	2	2	2	0	3'5'-cyclic	nucleotide	phosphodiesterase
HATPase_c	PF02518.21	gi|408405076|ref|YP_006863059.1|	-	6.9e-24	83.7	0.4	6.9e-23	80.4	0.1	2.2	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.20	gi|408405076|ref|YP_006863059.1|	-	4.4e-09	36.2	0.2	2.3e-08	33.8	0.0	2.4	2	1	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
HAMP	PF00672.20	gi|408405076|ref|YP_006863059.1|	-	1.2e-08	35.0	0.4	1.2e-08	35.0	0.3	2.7	2	0	0	2	2	2	1	HAMP	domain
HATPase_c_3	PF13589.1	gi|408405076|ref|YP_006863059.1|	-	3.9e-05	23.3	0.3	0.0001	21.9	0.2	1.8	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_5	PF14501.1	gi|408405076|ref|YP_006863059.1|	-	4.4e-05	23.1	0.1	0.00011	21.8	0.1	1.7	1	0	0	1	1	1	1	GHKL	domain
HATPase_c_2	PF13581.1	gi|408405076|ref|YP_006863059.1|	-	0.00011	21.9	0.0	0.00021	21.0	0.0	1.4	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
ADIP	PF11559.3	gi|408405076|ref|YP_006863059.1|	-	0.0055	16.6	9.9	0.0093	15.8	6.9	1.3	1	0	0	1	1	1	1	Afadin-	and	alpha	-actinin-Binding
DUF904	PF06005.7	gi|408405076|ref|YP_006863059.1|	-	0.0056	16.9	8.0	0.017	15.4	2.4	2.7	2	1	1	3	3	2	1	Protein	of	unknown	function	(DUF904)
IncA	PF04156.9	gi|408405076|ref|YP_006863059.1|	-	0.011	15.3	20.6	0.03	13.9	14.3	1.9	1	1	0	1	1	1	0	IncA	protein
OmpH	PF03938.9	gi|408405076|ref|YP_006863059.1|	-	0.028	14.3	10.1	0.048	13.5	7.0	1.5	1	1	0	1	1	1	0	Outer	membrane	protein	(OmpH-like)
IFT57	PF10498.4	gi|408405076|ref|YP_006863059.1|	-	0.031	13.0	7.5	0.048	12.4	5.2	1.2	1	0	0	1	1	1	0	Intra-flagellar	transport	protein	57
ATG16	PF08614.6	gi|408405076|ref|YP_006863059.1|	-	0.033	14.0	9.6	0.094	12.5	6.6	1.8	1	0	0	1	1	1	0	Autophagy	protein	16	(ATG16)
COG5	PF10392.4	gi|408405076|ref|YP_006863059.1|	-	0.042	13.8	3.4	0.075	12.9	2.3	1.5	1	0	0	1	1	1	0	Golgi	transport	complex	subunit	5
DUF3169	PF11368.3	gi|408405076|ref|YP_006863059.1|	-	0.059	12.5	1.7	0.098	11.8	1.2	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3169)
Reo_sigmaC	PF04582.7	gi|408405076|ref|YP_006863059.1|	-	0.12	11.5	1.0	0.18	10.9	0.7	1.2	1	0	0	1	1	1	0	Reovirus	sigma	C	capsid	protein
NPV_P10	PF05531.7	gi|408405076|ref|YP_006863059.1|	-	0.16	12.2	4.9	0.6	10.4	1.5	2.6	1	1	1	2	2	2	0	Nucleopolyhedrovirus	P10	protein
DUF4206	PF13901.1	gi|408405076|ref|YP_006863059.1|	-	0.28	10.7	3.1	3	7.3	0.4	2.2	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4206)
Sec20	PF03908.8	gi|408405076|ref|YP_006863059.1|	-	0.57	9.9	4.7	3.4	7.4	0.2	2.6	1	1	1	2	2	2	0	Sec20
Pyridox_oxidase	PF01243.15	gi|408405077|ref|YP_006863060.1|	-	2.2e-12	46.8	0.0	2.9e-12	46.4	0.0	1.1	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
RHH_1	PF01402.16	gi|408405079|ref|YP_006863062.1|	-	1.7e-05	24.5	0.5	2.6e-05	23.9	0.4	1.3	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
SIR2_2	PF13289.1	gi|408405079|ref|YP_006863062.1|	-	0.023	14.5	0.0	0.025	14.4	0.0	1.1	1	0	0	1	1	1	0	SIR2-like	domain
ADSL_C	PF10397.4	gi|408405079|ref|YP_006863062.1|	-	0.069	13.1	0.1	8.9	6.3	0.0	2.3	2	1	0	2	2	2	0	Adenylosuccinate	lyase	C-terminus
HATPase_c	PF02518.21	gi|408405082|ref|YP_006863065.1|	-	1e-26	92.8	0.2	1.8e-26	92.0	0.2	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_9	PF13426.1	gi|408405082|ref|YP_006863065.1|	-	5.6e-15	55.6	0.0	1.4e-14	54.2	0.0	1.7	1	0	0	1	1	1	1	PAS	domain
HisKA	PF00512.20	gi|408405082|ref|YP_006863065.1|	-	1.7e-13	50.3	0.0	3.1e-13	49.5	0.0	1.5	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
PAS	PF00989.19	gi|408405082|ref|YP_006863065.1|	-	1.6e-11	44.0	0.0	4.9e-11	42.3	0.0	1.9	2	0	0	2	2	2	1	PAS	fold
PAS_4	PF08448.5	gi|408405082|ref|YP_006863065.1|	-	2.5e-07	30.7	0.0	4.6e-07	29.8	0.0	1.4	1	0	0	1	1	1	1	PAS	fold
PAS_3	PF08447.6	gi|408405082|ref|YP_006863065.1|	-	8.1e-06	25.8	0.0	2e-05	24.5	0.0	1.7	1	0	0	1	1	1	1	PAS	fold
PAS_8	PF13188.1	gi|408405082|ref|YP_006863065.1|	-	4e-05	23.3	0.0	0.00011	21.9	0.0	1.8	1	0	0	1	1	1	1	PAS	domain
HATPase_c_2	PF13581.1	gi|408405082|ref|YP_006863065.1|	-	0.0012	18.6	0.0	0.0021	17.8	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
HATPase_c_3	PF13589.1	gi|408405082|ref|YP_006863065.1|	-	0.0027	17.3	0.1	0.0055	16.3	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
FeoC	PF09012.5	gi|408405082|ref|YP_006863065.1|	-	0.065	12.9	0.2	0.42	10.3	0.1	2.1	2	0	0	2	2	2	0	FeoC	like	transcriptional	regulator
Response_reg	PF00072.19	gi|408405083|ref|YP_006863066.1|	-	1e-11	44.8	0.5	1.8e-11	44.0	0.3	1.4	1	0	0	1	1	1	1	Response	regulator	receiver	domain
SopA_C	PF13979.1	gi|408405083|ref|YP_006863066.1|	-	0.0011	18.5	0.0	0.0017	17.9	0.0	1.3	1	1	0	1	1	1	1	SopA-like	catalytic	domain
HTH_45	PF14947.1	gi|408405085|ref|YP_006863068.1|	-	9.6e-07	28.5	0.3	1.1e-06	28.2	0.2	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF2680	PF10925.3	gi|408405085|ref|YP_006863068.1|	-	0.0095	15.7	0.4	0.88	9.4	0.0	2.3	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF2680)
MarR	PF01047.17	gi|408405085|ref|YP_006863068.1|	-	0.012	15.2	0.0	0.02	14.5	0.0	1.3	1	0	0	1	1	1	0	MarR	family
Toxin_64	PF15542.1	gi|408405085|ref|YP_006863068.1|	-	0.028	14.9	0.1	0.035	14.6	0.1	1.1	1	0	0	1	1	1	0	Putative	toxin	64
DUF2407_C	PF13373.1	gi|408405086|ref|YP_006863069.1|	-	8.3	6.3	6.2	2.5	8.0	0.6	2.4	3	0	0	3	3	3	0	DUF2407	C-terminal	domain
SHOCT	PF09851.4	gi|408405087|ref|YP_006863070.1|	-	1.2e-09	37.2	0.8	1.7e-09	36.8	0.5	1.2	1	0	0	1	1	1	1	Short	C-terminal	domain
DUF4271	PF14093.1	gi|408405087|ref|YP_006863070.1|	-	0.0085	15.7	0.2	0.009	15.7	0.1	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4271)
DUF2207	PF09972.4	gi|408405087|ref|YP_006863070.1|	-	0.098	11.2	0.4	0.1	11.1	0.3	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
UL2	PF08196.6	gi|408405087|ref|YP_006863070.1|	-	0.5	10.1	3.9	0.91	9.3	2.7	1.4	1	0	0	1	1	1	0	UL2	protein
FeoB_C	PF07664.7	gi|408405087|ref|YP_006863070.1|	-	1.7	8.1	8.1	0.3	10.5	1.0	2.2	2	0	0	2	2	2	0	Ferrous	iron	transport	protein	B	C	terminus
DUF4381	PF14316.1	gi|408405087|ref|YP_006863070.1|	-	4.3	7.4	9.0	0.14	12.2	1.4	1.9	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4381)
PepSY	PF03413.14	gi|408405088|ref|YP_006863071.1|	-	0.022	15.4	0.4	0.028	15.0	0.3	1.3	1	1	0	1	1	1	0	Peptidase	propeptide	and	YPEB	domain
DUF3992	PF13157.1	gi|408405088|ref|YP_006863071.1|	-	0.061	13.5	0.4	0.061	13.5	0.3	2.1	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3992)
Syndecan	PF01034.15	gi|408405088|ref|YP_006863071.1|	-	1.3	8.7	6.4	0.24	11.0	1.5	1.8	2	0	0	2	2	2	0	Syndecan	domain
Tic20	PF09685.5	gi|408405089|ref|YP_006863072.1|	-	0.39	10.7	8.2	0.049	13.6	1.9	1.9	1	1	1	2	2	2	0	Tic20-like	protein
DUF3483	PF11982.3	gi|408405089|ref|YP_006863072.1|	-	0.96	8.6	7.4	0.36	10.1	3.0	1.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3483)
HxlR	PF01638.12	gi|408405090|ref|YP_006863073.1|	-	1.5e-16	59.7	0.4	1.8e-16	59.5	0.2	1.1	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
HTH_27	PF13463.1	gi|408405090|ref|YP_006863073.1|	-	0.032	14.5	0.1	0.042	14.1	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
MarR	PF01047.17	gi|408405090|ref|YP_006863073.1|	-	0.035	13.8	0.1	0.055	13.1	0.0	1.2	1	0	0	1	1	1	0	MarR	family
IlvN	PF07991.7	gi|408405091|ref|YP_006863074.1|	-	1.2e-68	229.6	1.2	1.7e-68	229.1	0.8	1.2	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
IlvC	PF01450.14	gi|408405091|ref|YP_006863074.1|	-	2.9e-51	173.1	0.1	5.2e-51	172.4	0.1	1.4	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
NAD_binding_2	PF03446.10	gi|408405091|ref|YP_006863074.1|	-	2.2e-07	30.8	0.5	4.7e-07	29.8	0.3	1.5	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
2-Hacid_dh_C	PF02826.14	gi|408405091|ref|YP_006863074.1|	-	1.5e-06	27.4	0.1	2.9e-06	26.5	0.1	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
F420_oxidored	PF03807.12	gi|408405091|ref|YP_006863074.1|	-	6.2e-05	23.3	1.0	0.00015	22.1	0.7	1.7	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
AdoHcyase_NAD	PF00670.16	gi|408405091|ref|YP_006863074.1|	-	0.0039	17.0	0.2	0.0077	16.0	0.1	1.4	1	0	0	1	1	1	1	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
DUF1425	PF07233.7	gi|408405092|ref|YP_006863075.1|	-	0.014	14.9	0.0	0.027	14.0	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1425)
HisKA	PF00512.20	gi|408405092|ref|YP_006863075.1|	-	0.022	14.7	0.0	0.061	13.3	0.0	1.8	1	0	0	1	1	1	0	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c	PF02518.21	gi|408405093|ref|YP_006863076.1|	-	6.4e-06	25.8	0.1	2.2e-05	24.1	0.0	1.7	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
MTS	PF05175.9	gi|408405093|ref|YP_006863076.1|	-	0.0087	15.4	0.0	0.01	15.1	0.0	1.0	1	0	0	1	1	1	1	Methyltransferase	small	domain
Met_10	PF02475.11	gi|408405093|ref|YP_006863076.1|	-	0.027	14.0	0.0	0.033	13.7	0.0	1.1	1	0	0	1	1	1	0	Met-10+	like-protein
HATPase_c	PF02518.21	gi|408405094|ref|YP_006863077.1|	-	9.4e-10	38.2	0.0	1.3e-09	37.7	0.0	1.1	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
DUF3863	PF12979.2	gi|408405094|ref|YP_006863077.1|	-	0.025	13.2	0.0	0.028	13.0	0.0	1.1	1	0	0	1	1	1	0	Domain	of	Unknown	Function	with	PDB	structure	(DUF3863)
Pyridox_oxidase	PF01243.15	gi|408405095|ref|YP_006863078.1|	-	2.7e-15	56.1	0.0	3.7e-15	55.6	0.0	1.2	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Pyridox_ox_2	PF12900.2	gi|408405095|ref|YP_006863078.1|	-	5.5e-07	29.5	0.0	6.1e-07	29.3	0.0	1.1	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
B12-binding	PF02310.14	gi|408405096|ref|YP_006863079.1|	-	5.6e-18	64.9	0.0	6.9e-18	64.6	0.0	1.1	1	0	0	1	1	1	1	B12	binding	domain
Ocnus	PF05005.10	gi|408405096|ref|YP_006863079.1|	-	0.0058	16.4	0.0	0.0077	16.0	0.0	1.2	1	0	0	1	1	1	1	Janus/Ocnus	family	(Ocnus)
MAP7	PF05672.6	gi|408405097|ref|YP_006863080.1|	-	0.059	12.7	5.6	0.059	12.7	3.9	1.0	1	0	0	1	1	1	0	MAP7	(E-MAP-115)	family
GvpL_GvpF	PF06386.6	gi|408405097|ref|YP_006863080.1|	-	0.17	11.4	2.2	0.18	11.3	1.5	1.0	1	0	0	1	1	1	0	Gas	vesicle	synthesis	protein	GvpL/GvpF
ArgK	PF03308.11	gi|408405098|ref|YP_006863081.1|	-	4e-80	268.4	4.0	4.7e-80	268.1	2.7	1.0	1	0	0	1	1	1	1	ArgK	protein
CbiA	PF01656.18	gi|408405098|ref|YP_006863081.1|	-	2.4e-07	30.3	0.5	5.4e-07	29.2	0.3	1.7	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ATP_bind_1	PF03029.12	gi|408405098|ref|YP_006863081.1|	-	4.3e-07	29.7	0.0	0.0083	15.6	0.0	2.2	2	0	0	2	2	2	2	Conserved	hypothetical	ATP	binding	protein
MobB	PF03205.9	gi|408405098|ref|YP_006863081.1|	-	3.1e-05	23.7	0.0	0.00093	18.9	0.0	2.4	2	0	0	2	2	2	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
cobW	PF02492.14	gi|408405098|ref|YP_006863081.1|	-	0.00068	19.1	0.1	0.0091	15.4	0.1	2.3	1	1	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
DUF258	PF03193.11	gi|408405098|ref|YP_006863081.1|	-	0.0022	17.2	0.0	0.0046	16.1	0.0	1.7	2	0	0	2	2	2	1	Protein	of	unknown	function,	DUF258
AAA_10	PF12846.2	gi|408405098|ref|YP_006863081.1|	-	0.0047	16.4	0.2	0.01	15.2	0.1	1.8	1	1	0	1	1	1	1	AAA-like	domain
AAA_30	PF13604.1	gi|408405098|ref|YP_006863081.1|	-	0.0088	15.6	0.2	0.042	13.4	0.0	2.1	3	0	0	3	3	3	1	AAA	domain
AAA_16	PF13191.1	gi|408405098|ref|YP_006863081.1|	-	0.0094	15.9	0.1	0.12	12.2	0.0	2.2	2	0	0	2	2	2	1	AAA	ATPase	domain
GTP_EFTU	PF00009.22	gi|408405098|ref|YP_006863081.1|	-	0.035	13.5	0.0	0.68	9.3	0.0	2.4	1	1	0	1	1	1	0	Elongation	factor	Tu	GTP	binding	domain
ABC_tran	PF00005.22	gi|408405098|ref|YP_006863081.1|	-	0.13	12.5	0.4	0.3	11.3	0.0	1.8	2	0	0	2	2	2	0	ABC	transporter
ArsA_ATPase	PF02374.10	gi|408405098|ref|YP_006863081.1|	-	0.58	9.1	3.4	0.64	9.0	0.2	2.1	2	1	0	2	2	2	0	Anion-transporting	ATPase
MM_CoA_mutase	PF01642.17	gi|408405099|ref|YP_006863082.1|	-	3.8e-199	662.1	0.0	4.3e-199	661.9	0.0	1.0	1	0	0	1	1	1	1	Methylmalonyl-CoA	mutase
PAP_PilO	PF06864.7	gi|408405099|ref|YP_006863082.1|	-	0.00046	18.6	0.0	0.00084	17.7	0.0	1.3	1	0	0	1	1	1	1	Pilin	accessory	protein	(PilO)
ELFV_dehydrog_N	PF02812.13	gi|408405099|ref|YP_006863082.1|	-	0.11	12.1	0.0	0.2	11.2	0.0	1.4	1	0	0	1	1	1	0	Glu/Leu/Phe/Val	dehydrogenase,	dimerisation	domain
DUF3037	PF11236.3	gi|408405099|ref|YP_006863082.1|	-	0.18	11.8	3.7	3.2	7.8	0.1	3.3	3	1	1	4	4	4	0	Protein	of	unknown	function	(DUF3037)
Spore_GerAC	PF05504.6	gi|408405099|ref|YP_006863082.1|	-	0.53	10.0	7.4	1.3	8.8	3.4	2.2	2	0	0	2	2	2	0	Spore	germination	B3/	GerAC	like,	C-terminal
Na_H_Exchanger	PF00999.16	gi|408405100|ref|YP_006863083.1|	-	1.8e-56	191.3	55.3	2.1e-56	191.0	38.3	1.0	1	0	0	1	1	1	1	Sodium/hydrogen	exchanger	family
Glyoxalase_4	PF13669.1	gi|408405101|ref|YP_006863084.1|	-	9.4e-24	83.5	0.0	1.1e-23	83.3	0.0	1.1	1	0	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase	PF00903.20	gi|408405101|ref|YP_006863084.1|	-	3.6e-14	52.8	0.0	4.2e-14	52.6	0.0	1.0	1	0	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_2	PF12681.2	gi|408405101|ref|YP_006863084.1|	-	1.8e-09	38.1	0.0	2.1e-09	37.9	0.0	1.1	1	0	0	1	1	1	1	Glyoxalase-like	domain
Glyoxalase_3	PF13468.1	gi|408405101|ref|YP_006863084.1|	-	1.2e-08	35.0	0.0	1.4e-08	34.8	0.0	1.1	1	0	0	1	1	1	1	Glyoxalase-like	domain
Fucose_iso_C	PF02952.12	gi|408405101|ref|YP_006863084.1|	-	0.063	12.7	0.1	3	7.3	0.0	2.1	2	0	0	2	2	2	0	L-fucose	isomerase,	C-terminal	domain
Cation_efflux	PF01545.16	gi|408405101|ref|YP_006863084.1|	-	0.11	11.5	0.3	0.15	11.1	0.2	1.1	1	0	0	1	1	1	0	Cation	efflux	family
Asn_synthase	PF00733.16	gi|408405102|ref|YP_006863085.1|	-	1.6e-31	109.6	0.1	2.2e-30	106.0	0.1	2.0	1	1	0	1	1	1	1	Asparagine	synthase
DUF3240	PF11582.3	gi|408405102|ref|YP_006863085.1|	-	0.054	13.4	0.0	0.12	12.3	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3240)
ABC_tran	PF00005.22	gi|408405104|ref|YP_006863087.1|	-	3.4e-34	118.1	0.0	5.7e-34	117.3	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|408405104|ref|YP_006863087.1|	-	8.5e-15	55.4	0.2	3.8e-09	36.9	0.0	2.2	1	1	1	2	2	2	2	AAA	domain
SMC_N	PF02463.14	gi|408405104|ref|YP_006863087.1|	-	1.2e-07	31.2	1.0	1.5e-06	27.6	0.7	2.0	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_15	PF13175.1	gi|408405104|ref|YP_006863087.1|	-	2.6e-06	26.7	0.0	0.002	17.2	0.0	2.1	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA_29	PF13555.1	gi|408405104|ref|YP_006863087.1|	-	5.2e-05	22.6	0.1	9.8e-05	21.8	0.1	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_22	PF13401.1	gi|408405104|ref|YP_006863087.1|	-	6e-05	23.1	0.1	0.00035	20.7	0.1	2.0	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.1	gi|408405104|ref|YP_006863087.1|	-	0.00025	21.1	0.1	0.00038	20.4	0.0	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
DUF258	PF03193.11	gi|408405104|ref|YP_006863087.1|	-	0.00054	19.1	0.1	0.0008	18.6	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
AAA_10	PF12846.2	gi|408405104|ref|YP_006863087.1|	-	0.00056	19.4	0.7	0.0033	16.8	0.2	1.9	1	1	0	2	2	2	1	AAA-like	domain
MMR_HSR1	PF01926.18	gi|408405104|ref|YP_006863087.1|	-	0.0007	19.5	0.7	0.0021	17.9	0.5	1.8	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
AAA_17	PF13207.1	gi|408405104|ref|YP_006863087.1|	-	0.0025	18.6	0.0	0.0039	18.0	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_25	PF13481.1	gi|408405104|ref|YP_006863087.1|	-	0.0044	16.4	0.0	0.023	14.1	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
AAA_23	PF13476.1	gi|408405104|ref|YP_006863087.1|	-	0.0054	17.0	0.0	0.0082	16.4	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_33	PF13671.1	gi|408405104|ref|YP_006863087.1|	-	0.0056	16.5	0.4	0.016	15.0	0.3	1.9	1	1	0	1	1	1	1	AAA	domain
NACHT	PF05729.7	gi|408405104|ref|YP_006863087.1|	-	0.0092	15.6	0.0	0.095	12.3	0.0	2.1	2	0	0	2	2	2	1	NACHT	domain
Dynamin_N	PF00350.18	gi|408405104|ref|YP_006863087.1|	-	0.013	15.2	0.9	0.83	9.4	0.1	2.2	2	0	0	2	2	2	0	Dynamin	family
MobB	PF03205.9	gi|408405104|ref|YP_006863087.1|	-	0.016	14.8	0.0	0.044	13.4	0.0	1.7	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
IstB_IS21	PF01695.12	gi|408405104|ref|YP_006863087.1|	-	0.027	13.8	0.1	1.1	8.6	0.0	2.1	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
Arch_ATPase	PF01637.13	gi|408405104|ref|YP_006863087.1|	-	0.033	13.8	0.0	0.06	13.0	0.0	1.4	1	0	0	1	1	1	0	Archaeal	ATPase
cobW	PF02492.14	gi|408405104|ref|YP_006863087.1|	-	0.036	13.5	0.1	0.068	12.6	0.0	1.5	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
G-alpha	PF00503.15	gi|408405104|ref|YP_006863087.1|	-	0.041	12.5	0.0	0.05	12.2	0.0	1.1	1	0	0	1	1	1	0	G-protein	alpha	subunit
ABC_ATPase	PF09818.4	gi|408405104|ref|YP_006863087.1|	-	0.049	12.2	0.1	0.33	9.4	0.0	1.9	2	0	0	2	2	2	0	Predicted	ATPase	of	the	ABC	class
AAA_19	PF13245.1	gi|408405104|ref|YP_006863087.1|	-	0.058	13.1	0.1	0.17	11.6	0.1	1.8	1	0	0	1	1	1	0	Part	of	AAA	domain
AAA_30	PF13604.1	gi|408405104|ref|YP_006863087.1|	-	0.06	12.9	0.0	0.12	11.8	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_18	PF13238.1	gi|408405104|ref|YP_006863087.1|	-	0.065	13.5	0.1	0.22	11.8	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
NB-ARC	PF00931.17	gi|408405104|ref|YP_006863087.1|	-	0.081	11.7	0.1	0.15	10.8	0.0	1.4	1	0	0	1	1	1	0	NB-ARC	domain
T2SE	PF00437.15	gi|408405104|ref|YP_006863087.1|	-	0.082	11.7	0.1	0.15	10.8	0.0	1.4	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
DUF1191	PF06697.7	gi|408405104|ref|YP_006863087.1|	-	0.098	11.4	0.0	0.14	10.9	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1191)
ArgK	PF03308.11	gi|408405104|ref|YP_006863087.1|	-	0.1	11.3	0.2	0.18	10.5	0.1	1.4	1	0	0	1	1	1	0	ArgK	protein
ATP-synt_ab	PF00006.20	gi|408405104|ref|YP_006863087.1|	-	0.1	12.0	0.0	0.17	11.3	0.0	1.3	1	1	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
NPCBM_assoc	PF10633.4	gi|408405105|ref|YP_006863088.1|	-	8.1e-07	29.0	1.2	0.049	13.6	0.0	3.8	3	0	0	3	3	3	2	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
Alpha_adaptinC2	PF02883.15	gi|408405105|ref|YP_006863088.1|	-	0.00059	20.1	0.8	1	9.7	0.1	2.4	2	0	0	2	2	2	2	Adaptin	C-terminal	domain
DUF11	PF01345.13	gi|408405105|ref|YP_006863088.1|	-	0.0077	16.2	1.7	0.032	14.2	0.2	2.5	2	0	0	2	2	2	1	Domain	of	unknown	function	DUF11
ApoL	PF05461.6	gi|408405105|ref|YP_006863088.1|	-	0.096	11.9	0.1	0.15	11.2	0.1	1.2	1	0	0	1	1	1	0	Apolipoprotein	L
CARDB	PF07705.6	gi|408405105|ref|YP_006863088.1|	-	0.57	10.2	11.0	0.78	9.8	0.7	4.2	2	2	2	4	4	4	0	CARDB
MacB_PCD	PF12704.2	gi|408405106|ref|YP_006863089.1|	-	4.7e-31	108.1	0.9	4.7e-31	108.1	0.6	2.3	2	1	0	2	2	2	2	MacB-like	periplasmic	core	domain
FtsX	PF02687.16	gi|408405106|ref|YP_006863089.1|	-	1.7e-21	76.2	9.0	1.7e-21	76.2	6.2	2.0	2	0	0	2	2	2	1	FtsX-like	permease	family
DLH	PF01738.13	gi|408405107|ref|YP_006863090.1|	-	1e-17	64.1	0.0	1.5e-17	63.6	0.0	1.1	1	0	0	1	1	1	1	Dienelactone	hydrolase	family
Abhydrolase_5	PF12695.2	gi|408405107|ref|YP_006863090.1|	-	0.015	15.0	0.0	0.017	14.8	0.0	1.2	1	0	0	1	1	1	0	Alpha/beta	hydrolase	family
Peptidase_C25_C	PF03785.9	gi|408405107|ref|YP_006863090.1|	-	0.14	11.9	0.3	1.2	8.9	0.1	2.0	1	1	1	2	2	2	0	Peptidase	family	C25,	C	terminal	ig-like	domain
AmoC	PF04896.7	gi|408405109|ref|YP_006863092.1|	-	2e-15	56.5	5.7	2.2e-15	56.3	4.0	1.1	1	0	0	1	1	1	1	Ammonia	monooxygenase/methane	monooxygenase,	subunit	C
OAD_gamma	PF04277.8	gi|408405109|ref|YP_006863092.1|	-	0.25	11.7	1.9	1.5	9.2	0.0	2.2	2	0	0	2	2	2	0	Oxaloacetate	decarboxylase,	gamma	chain
Metallophos	PF00149.23	gi|408405111|ref|YP_006863094.1|	-	7.7e-18	64.6	0.2	1.1e-17	64.1	0.1	1.2	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.2	gi|408405111|ref|YP_006863094.1|	-	1.5e-16	60.6	0.0	1.9e-16	60.2	0.0	1.1	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Iso_dh	PF00180.15	gi|408405113|ref|YP_006863096.1|	-	7e-80	268.5	0.0	8.6e-80	268.2	0.0	1.0	1	0	0	1	1	1	1	Isocitrate/isopropylmalate	dehydrogenase
MTS	PF05175.9	gi|408405114|ref|YP_006863097.1|	-	4.5e-13	48.9	0.0	6.1e-13	48.4	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_26	PF13659.1	gi|408405114|ref|YP_006863097.1|	-	1.2e-12	47.9	0.1	1.6e-12	47.5	0.1	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|408405114|ref|YP_006863097.1|	-	0.00015	21.4	0.0	0.00086	19.0	0.0	1.8	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_11	PF08241.7	gi|408405114|ref|YP_006863097.1|	-	0.00054	20.3	0.0	0.0013	19.1	0.0	1.6	2	0	0	2	2	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|408405114|ref|YP_006863097.1|	-	0.0015	18.8	0.0	0.0026	18.0	0.0	1.6	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|408405114|ref|YP_006863097.1|	-	0.0033	17.0	0.0	0.0066	16.0	0.0	1.5	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|408405114|ref|YP_006863097.1|	-	0.006	17.1	0.0	0.0093	16.5	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Eco57I	PF07669.6	gi|408405114|ref|YP_006863097.1|	-	0.014	15.6	0.0	0.022	15.1	0.0	1.2	1	0	0	1	1	1	0	Eco57I	restriction-modification	methylase
Methyltransf_12	PF08242.7	gi|408405114|ref|YP_006863097.1|	-	0.024	15.1	0.1	0.057	13.8	0.1	1.7	1	1	0	1	1	1	0	Methyltransferase	domain
DUF165	PF02592.10	gi|408405114|ref|YP_006863097.1|	-	0.045	13.9	0.0	1.2	9.3	0.0	2.2	1	1	0	1	1	1	0	Uncharacterized	ACR,	YhhQ	family	COG1738
N6_Mtase	PF02384.11	gi|408405114|ref|YP_006863097.1|	-	0.046	12.8	0.0	0.093	11.7	0.0	1.5	2	0	0	2	2	2	0	N-6	DNA	Methylase
UPF0020	PF01170.13	gi|408405114|ref|YP_006863097.1|	-	0.14	11.7	0.0	0.3	10.6	0.0	1.9	1	1	0	1	1	1	0	Putative	RNA	methylase	family	UPF0020
RrnaAD	PF00398.15	gi|408405115|ref|YP_006863098.1|	-	4.5e-41	140.6	0.1	5.2e-41	140.4	0.1	1.1	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
Methyltransf_26	PF13659.1	gi|408405115|ref|YP_006863098.1|	-	2.2e-07	30.9	0.0	3.2e-07	30.3	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|408405115|ref|YP_006863098.1|	-	8.3e-07	29.5	0.0	1.3e-06	28.9	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|408405115|ref|YP_006863098.1|	-	2.2e-06	27.3	0.0	3e-06	26.9	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.9	gi|408405115|ref|YP_006863098.1|	-	7.1e-06	25.4	0.0	1.4e-05	24.5	0.0	1.4	2	0	0	2	2	2	1	Methyltransferase	small	domain
PCMT	PF01135.14	gi|408405115|ref|YP_006863098.1|	-	1.5e-05	24.6	0.1	0.0002	20.9	0.0	2.1	2	0	0	2	2	2	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_23	PF13489.1	gi|408405115|ref|YP_006863098.1|	-	0.0013	18.4	0.0	0.002	17.8	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.7	gi|408405115|ref|YP_006863098.1|	-	0.0038	17.6	0.0	0.0071	16.8	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
PrmA	PF06325.8	gi|408405115|ref|YP_006863098.1|	-	0.036	13.1	0.0	0.079	12.0	0.0	1.5	2	0	0	2	2	2	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
DREV	PF05219.7	gi|408405115|ref|YP_006863098.1|	-	0.037	12.9	0.0	0.051	12.4	0.0	1.3	1	0	0	1	1	1	0	DREV	methyltransferase
Methyltransf_32	PF13679.1	gi|408405115|ref|YP_006863098.1|	-	0.052	13.2	0.0	0.08	12.6	0.0	1.4	1	0	0	1	1	1	0	Methyltransferase	domain
DUF655	PF04919.7	gi|408405116|ref|YP_006863099.1|	-	6.4e-56	188.9	0.9	7.4e-56	188.7	0.6	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF655)
HHH_6	PF14579.1	gi|408405116|ref|YP_006863099.1|	-	5e-05	23.2	0.2	0.00021	21.2	0.0	2.0	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
HHH_3	PF12836.2	gi|408405116|ref|YP_006863099.1|	-	0.0041	17.0	0.0	0.01	15.7	0.0	1.7	1	1	0	1	1	1	1	Helix-hairpin-helix	motif
RNA_pol_Rpb4	PF03874.11	gi|408405117|ref|YP_006863100.1|	-	3e-13	49.8	0.8	3.9e-13	49.4	0.5	1.1	1	0	0	1	1	1	1	RNA	polymerase	Rpb4
Atx10homo_assoc	PF09759.4	gi|408405117|ref|YP_006863100.1|	-	0.0025	17.5	0.3	0.0033	17.1	0.2	1.2	1	0	0	1	1	1	1	Spinocerebellar	ataxia	type	10	protein	domain
DUF3458	PF11940.3	gi|408405117|ref|YP_006863100.1|	-	0.046	12.5	0.2	0.053	12.3	0.1	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3458)
Dna2	PF08696.6	gi|408405117|ref|YP_006863100.1|	-	0.056	12.7	0.3	0.06	12.6	0.2	1.2	1	0	0	1	1	1	0	DNA	replication	factor	Dna2
DUF4315	PF14193.1	gi|408405117|ref|YP_006863100.1|	-	0.067	13.1	0.8	0.11	12.4	0.6	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4315)
Acetyltransf_4	PF13420.1	gi|408405117|ref|YP_006863100.1|	-	0.073	13.0	0.1	0.075	12.9	0.1	1.3	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Glycos_trans_3N	PF02885.12	gi|408405117|ref|YP_006863100.1|	-	0.11	12.1	0.1	2.2	7.9	0.0	2.4	1	1	1	2	2	2	0	Glycosyl	transferase	family,	helical	bundle	domain
Ribosomal_L21e	PF01157.13	gi|408405118|ref|YP_006863101.1|	-	1.1e-12	47.6	1.6	1.3e-12	47.3	1.1	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L21e
Rad51	PF08423.6	gi|408405119|ref|YP_006863102.1|	-	1.5e-90	302.5	0.4	1.7e-90	302.3	0.3	1.0	1	0	0	1	1	1	1	Rad51
AAA_25	PF13481.1	gi|408405119|ref|YP_006863102.1|	-	8e-14	51.4	0.0	1.1e-13	50.9	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
RecA	PF00154.16	gi|408405119|ref|YP_006863102.1|	-	6.3e-13	48.4	0.1	8.4e-13	48.0	0.1	1.1	1	0	0	1	1	1	1	recA	bacterial	DNA	recombination	protein
KaiC	PF06745.8	gi|408405119|ref|YP_006863102.1|	-	2.8e-10	39.6	0.2	4.6e-10	39.0	0.1	1.3	1	1	0	1	1	1	1	KaiC
AAA_22	PF13401.1	gi|408405119|ref|YP_006863102.1|	-	0.0011	19.0	0.1	0.0021	18.1	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_18	PF13238.1	gi|408405119|ref|YP_006863102.1|	-	0.018	15.3	0.0	0.04	14.2	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
XOO_2897-deam	PF14440.1	gi|408405119|ref|YP_006863102.1|	-	0.027	14.1	0.0	3.3	7.4	0.0	3.0	3	0	0	3	3	3	0	Xanthomonas	XOO_2897-like	deaminase
PAXNEB	PF05625.6	gi|408405119|ref|YP_006863102.1|	-	0.047	12.5	0.1	0.15	10.8	0.0	1.7	2	0	0	2	2	2	0	PAXNEB	protein
ABC_tran	PF00005.22	gi|408405119|ref|YP_006863102.1|	-	0.071	13.3	0.0	0.13	12.5	0.0	1.4	1	0	0	1	1	1	0	ABC	transporter
Monooxygenase_B	PF04744.7	gi|408405120|ref|YP_006863103.1|	-	2.5e-08	33.0	0.0	4.5e-08	32.2	0.0	1.4	1	0	0	1	1	1	1	Monooxygenase	subunit	B	protein
FtsL	PF04999.8	gi|408405120|ref|YP_006863103.1|	-	0.13	12.0	0.4	0.23	11.2	0.3	1.4	1	0	0	1	1	1	0	Cell	division	protein	FtsL
TP_methylase	PF00590.15	gi|408405121|ref|YP_006863104.1|	-	1.4e-35	122.9	0.0	1.7e-35	122.6	0.0	1.1	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
AA_kinase	PF00696.23	gi|408405122|ref|YP_006863105.1|	-	1.9e-52	178.2	0.7	1.9e-52	178.2	0.5	2.0	2	1	0	2	2	2	1	Amino	acid	kinase	family
ACT_7	PF13840.1	gi|408405122|ref|YP_006863105.1|	-	8.6e-24	82.8	1.8	3.1e-11	42.6	0.1	2.6	2	0	0	2	2	2	2	ACT	domain
ACT	PF01842.20	gi|408405122|ref|YP_006863105.1|	-	6.4e-23	79.8	0.5	6.9e-12	44.5	0.1	2.6	2	0	0	2	2	2	2	ACT	domain
ACT_6	PF13740.1	gi|408405122|ref|YP_006863105.1|	-	0.0031	17.2	1.8	0.14	11.8	0.0	3.1	3	0	0	3	3	3	1	ACT	domain
LytR_C	PF13399.1	gi|408405122|ref|YP_006863105.1|	-	0.0047	17.2	0.2	3	8.2	0.0	2.6	1	1	1	2	2	2	2	LytR	cell	envelope-related	transcriptional	attenuator
PCNA_N	PF00705.13	gi|408405123|ref|YP_006863106.1|	-	4.9e-18	64.8	0.0	8.5e-17	60.8	0.0	2.0	2	0	0	2	2	2	1	Proliferating	cell	nuclear	antigen,	N-terminal	domain
PCNA_C	PF02747.10	gi|408405123|ref|YP_006863106.1|	-	2.9e-16	59.5	0.1	3.3e-15	56.1	0.0	2.3	2	1	0	2	2	2	1	Proliferating	cell	nuclear	antigen,	C-terminal	domain
Rad1	PF02144.11	gi|408405123|ref|YP_006863106.1|	-	3e-09	36.0	0.0	1.7e-05	23.7	0.0	2.1	1	1	0	2	2	2	2	Repair	protein	Rad1/Rec1/Rad17
Rad9	PF04139.8	gi|408405123|ref|YP_006863106.1|	-	0.00029	20.0	0.0	0.00039	19.6	0.0	1.1	1	0	0	1	1	1	1	Rad9
TFIIS_C	PF01096.13	gi|408405124|ref|YP_006863107.1|	-	7.1e-19	67.1	12.7	1.2e-18	66.3	4.2	2.2	2	0	0	2	2	2	1	Transcription	factor	S-II	(TFIIS)
DUF2387	PF09526.5	gi|408405124|ref|YP_006863107.1|	-	0.00019	21.3	5.7	0.066	13.1	0.5	2.4	2	1	0	2	2	2	2	Probable	metal-binding	protein	(DUF2387)
zinc_ribbon_5	PF13719.1	gi|408405124|ref|YP_006863107.1|	-	0.00047	19.6	12.3	0.1	12.1	1.0	3.2	3	0	0	3	3	3	2	zinc-ribbon	domain
zinc_ribbon_4	PF13717.1	gi|408405124|ref|YP_006863107.1|	-	0.0005	19.7	12.4	0.11	12.1	1.2	3.2	3	0	0	3	3	3	2	zinc-ribbon	domain
DUF2752	PF10825.3	gi|408405124|ref|YP_006863107.1|	-	0.001	19.0	0.3	0.025	14.6	0.0	2.3	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF2752)
DZR	PF12773.2	gi|408405124|ref|YP_006863107.1|	-	0.002	17.9	6.8	0.29	10.9	4.7	2.3	1	1	0	1	1	1	1	Double	zinc	ribbon
Zn_Tnp_IS1595	PF12760.2	gi|408405124|ref|YP_006863107.1|	-	0.0029	17.3	8.2	0.041	13.6	2.8	2.4	2	1	0	2	2	2	1	Transposase	zinc-ribbon	domain
zf-DNA_Pol	PF08996.5	gi|408405124|ref|YP_006863107.1|	-	0.0082	15.5	0.4	0.0082	15.5	0.2	2.1	1	1	0	2	2	2	1	DNA	Polymerase	alpha	zinc	finger
DNA_RNApol_7kD	PF03604.8	gi|408405124|ref|YP_006863107.1|	-	0.014	14.8	5.6	4.3	6.8	0.1	3.2	3	0	0	3	3	3	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
zf-CSL	PF05207.8	gi|408405124|ref|YP_006863107.1|	-	0.019	14.4	0.6	0.56	9.7	0.1	2.3	2	0	0	2	2	2	0	CSL	zinc	finger
Lar_restr_allev	PF14354.1	gi|408405124|ref|YP_006863107.1|	-	0.024	14.9	6.4	0.7	10.2	0.9	2.3	1	1	0	2	2	2	0	Restriction	alleviation	protein	Lar
Zn-ribbon_8	PF09723.5	gi|408405124|ref|YP_006863107.1|	-	0.026	14.4	10.2	6.3	6.8	0.1	3.4	3	0	0	3	3	3	0	Zinc	ribbon	domain
Baculo_LEF5_C	PF11792.3	gi|408405124|ref|YP_006863107.1|	-	0.027	13.8	0.1	0.027	13.8	0.1	2.1	3	0	0	3	3	2	0	Baculoviridae	late	expression	factor	5	C-terminal	domain
zf-ISL3	PF14690.1	gi|408405124|ref|YP_006863107.1|	-	0.027	14.4	7.0	0.69	9.9	0.2	3.1	3	0	0	3	3	3	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
zf-H2C2_2	PF13465.1	gi|408405124|ref|YP_006863107.1|	-	0.027	14.7	6.4	6.5	7.2	0.4	3.3	3	0	0	3	3	3	0	Zinc-finger	double	domain
zf-ribbon_3	PF13248.1	gi|408405124|ref|YP_006863107.1|	-	0.031	13.5	9.7	0.42	9.8	0.2	3.1	3	0	0	3	3	3	0	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.7	gi|408405124|ref|YP_006863107.1|	-	0.037	13.3	3.8	0.19	11.1	0.2	2.6	2	1	0	2	2	2	0	TFIIB	zinc-binding
VP_N-CPKC	PF11475.3	gi|408405124|ref|YP_006863107.1|	-	0.045	13.3	4.5	9.9	5.7	0.3	3.4	3	0	0	3	3	3	0	Virion	protein	N	terminal	domain
zinc_ribbon_2	PF13240.1	gi|408405124|ref|YP_006863107.1|	-	0.047	13.1	11.5	1.1	8.8	0.3	3.3	3	0	0	3	3	3	0	zinc-ribbon	domain
UPF0547	PF10571.4	gi|408405124|ref|YP_006863107.1|	-	0.053	13.2	6.6	2	8.1	0.1	3.0	3	0	0	3	3	3	0	Uncharacterised	protein	family	UPF0547
Zn_Tnp_IS1	PF03811.8	gi|408405124|ref|YP_006863107.1|	-	0.067	12.7	5.7	5.5	6.5	0.1	3.2	3	0	0	3	3	3	0	InsA	N-terminal	domain
Rubredoxin	PF00301.15	gi|408405124|ref|YP_006863107.1|	-	0.082	12.7	5.8	4.9	7.1	0.0	3.2	3	0	0	3	3	3	0	Rubredoxin
Ogr_Delta	PF04606.7	gi|408405124|ref|YP_006863107.1|	-	0.16	11.6	13.9	2.9	7.6	0.4	2.9	2	2	0	2	2	2	0	Ogr/Delta-like	zinc	finger
zf-C2H2_4	PF13894.1	gi|408405124|ref|YP_006863107.1|	-	0.24	11.8	5.0	15	6.2	0.0	3.2	3	0	0	3	3	3	0	C2H2-type	zinc	finger
PolC_DP2	PF03833.8	gi|408405124|ref|YP_006863107.1|	-	0.31	8.6	2.4	0.22	9.1	0.9	1.3	1	1	0	1	1	1	0	DNA	polymerase	II	large	subunit	DP2
zf-PHD-like	PF15446.1	gi|408405124|ref|YP_006863107.1|	-	0.35	10.1	5.8	0.65	9.2	0.4	2.0	1	1	1	2	2	2	0	PHD/FYVE-zinc-finger	like	domain
DUF3797	PF12677.2	gi|408405124|ref|YP_006863107.1|	-	0.42	10.2	6.0	1.9	8.2	0.0	3.0	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF3797)
C1_4	PF07975.7	gi|408405124|ref|YP_006863107.1|	-	0.58	10.2	0.1	0.58	10.2	0.1	2.9	2	1	0	2	2	2	0	TFIIH	C1-like	domain
CIAPIN1	PF05093.8	gi|408405124|ref|YP_006863107.1|	-	0.58	10.2	4.1	0.23	11.5	0.8	1.7	2	0	0	2	2	2	0	Cytokine-induced	anti-apoptosis	inhibitor	1,	Fe-S	biogenesis
OrfB_Zn_ribbon	PF07282.6	gi|408405124|ref|YP_006863107.1|	-	0.72	9.5	10.2	3.7	7.2	0.6	2.9	1	1	1	2	2	2	0	Putative	transposase	DNA-binding	domain
DUF329	PF03884.9	gi|408405124|ref|YP_006863107.1|	-	0.74	9.4	6.2	7.5	6.2	0.3	3.0	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF329)
zf-Mss51	PF13824.1	gi|408405124|ref|YP_006863107.1|	-	0.79	9.6	7.6	4.3	7.2	0.2	3.0	2	1	1	3	3	3	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
zf-4CXXC_R1	PF10497.4	gi|408405124|ref|YP_006863107.1|	-	0.95	9.6	4.8	1.8	8.7	3.3	1.5	1	1	0	1	1	1	0	Zinc-finger	domain	of	monoamine-oxidase	A	repressor	R1
Zn_Tnp_IS91	PF14319.1	gi|408405124|ref|YP_006863107.1|	-	0.98	8.9	8.6	2.2	7.8	0.2	3.0	1	1	2	3	3	3	0	Transposase	zinc-binding	domain
Cys_rich_KTR	PF14205.1	gi|408405124|ref|YP_006863107.1|	-	1	8.8	7.9	15	5.1	0.1	2.9	2	1	0	2	2	2	0	Cysteine-rich	KTR
PhnA_Zn_Ribbon	PF08274.7	gi|408405124|ref|YP_006863107.1|	-	1.1	9.1	4.9	4.7	7.0	0.4	2.7	2	1	0	2	2	2	0	PhnA	Zinc-Ribbon
Nudix_N_2	PF14803.1	gi|408405124|ref|YP_006863107.1|	-	1.3	8.8	8.3	13	5.5	0.2	3.8	4	0	0	4	4	4	0	Nudix	N-terminal
RNA_POL_M_15KD	PF02150.11	gi|408405124|ref|YP_006863107.1|	-	1.7	8.4	5.7	4.4	7.0	0.5	2.9	2	1	0	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
DUF2082	PF09855.4	gi|408405124|ref|YP_006863107.1|	-	1.7	8.5	9.8	22	4.9	1.7	3.3	3	1	0	3	3	3	0	Nucleic-acid-binding	protein	containing	Zn-ribbon	domain	(DUF2082)
zf-C2H2	PF00096.21	gi|408405124|ref|YP_006863107.1|	-	2	8.9	6.7	56	4.3	0.2	3.2	3	0	0	3	3	3	0	Zinc	finger,	C2H2	type
Elf1	PF05129.8	gi|408405124|ref|YP_006863107.1|	-	2	8.1	7.7	0.79	9.4	1.7	2.5	1	1	1	2	2	2	0	Transcription	elongation	factor	Elf1	like
Fer4_9	PF13187.1	gi|408405124|ref|YP_006863107.1|	-	2.6	8.4	6.5	14	6.0	4.5	2.0	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
zf-C4_Topoisom	PF01396.14	gi|408405124|ref|YP_006863107.1|	-	3.6	7.1	11.7	3.8	7.0	0.4	2.8	2	1	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
DUF4109	PF13397.1	gi|408405124|ref|YP_006863107.1|	-	3.9	7.8	6.6	3.4	8.0	1.1	2.3	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4109)
Prim_Zn_Ribbon	PF08273.7	gi|408405124|ref|YP_006863107.1|	-	4.5	7.4	8.3	17	5.5	2.5	2.6	2	1	0	2	2	2	0	Zinc-binding	domain	of	primase-helicase
zf-HIT	PF04438.11	gi|408405124|ref|YP_006863107.1|	-	4.7	6.9	9.1	26	4.5	0.5	3.1	3	0	0	3	3	3	0	HIT	zinc	finger
DUF3795	PF12675.2	gi|408405124|ref|YP_006863107.1|	-	5.4	7.2	7.1	12	6.1	5.0	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3795)
FYDLN_acid	PF09538.5	gi|408405124|ref|YP_006863107.1|	-	6.2	7.4	7.3	3.3	8.3	1.5	2.3	1	1	1	2	2	2	0	Protein	of	unknown	function	(FYDLN_acid)
HypA	PF01155.14	gi|408405124|ref|YP_006863107.1|	-	7.8	6.2	8.2	7.9	6.2	1.8	2.7	1	1	1	2	2	2	0	Hydrogenase	expression/synthesis	hypA	family
zf-RING_3	PF14369.1	gi|408405124|ref|YP_006863107.1|	-	8.7	6.4	7.6	1.6	8.7	0.1	2.7	3	0	0	3	3	3	0	zinc-finger
RNA_pol_L_2	PF13656.1	gi|408405125|ref|YP_006863108.1|	-	2.2e-18	65.4	0.5	3e-18	65.0	0.2	1.3	1	1	1	2	2	2	1	RNA	polymerase	Rpb3/Rpb11	dimerisation	domain
Radical_SAM	PF04055.16	gi|408405127|ref|YP_006863110.1|	-	1.5e-13	51.2	0.1	2.9e-13	50.3	0.0	1.5	1	0	0	1	1	1	1	Radical	SAM	superfamily
Fer4_12	PF13353.1	gi|408405127|ref|YP_006863110.1|	-	0.00044	20.3	0.0	0.00092	19.3	0.0	1.5	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
OrfB_Zn_ribbon	PF07282.6	gi|408405128|ref|YP_006863111.1|	-	7.9e-21	73.5	0.4	1.1e-20	72.9	0.3	1.3	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
Zn_Tnp_IS1595	PF12760.2	gi|408405128|ref|YP_006863111.1|	-	0.041	13.6	0.2	0.076	12.8	0.2	1.4	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.7	gi|408405128|ref|YP_006863111.1|	-	0.053	12.8	0.3	3.6	6.9	0.0	2.2	2	0	0	2	2	2	0	TFIIB	zinc-binding
zinc_ribbon_4	PF13717.1	gi|408405128|ref|YP_006863111.1|	-	0.072	12.8	3.4	3.7	7.3	0.6	2.7	2	1	1	3	3	3	0	zinc-ribbon	domain
zinc_ribbon_5	PF13719.1	gi|408405128|ref|YP_006863111.1|	-	0.19	11.3	3.9	5.2	6.7	0.7	2.7	2	1	1	3	3	3	0	zinc-ribbon	domain
zf-C2H2_3	PF13878.1	gi|408405128|ref|YP_006863111.1|	-	5.7	6.5	6.1	11	5.6	0.4	2.3	1	1	1	2	2	2	0	zinc-finger	of	acetyl-transferase	ESCO
HTH_OrfB_IS605	PF12323.3	gi|408405129|ref|YP_006863112.1|	-	2.1e-09	36.5	0.0	2.1e-09	36.5	0.0	1.8	3	0	0	3	3	3	1	Helix-turn-helix	domain
Nitroreductase	PF00881.19	gi|408405130|ref|YP_006863113.1|	-	5.8e-16	58.7	0.0	8.1e-16	58.2	0.0	1.2	1	0	0	1	1	1	1	Nitroreductase	family
Archaeal_AmoA	PF12942.2	gi|408405131|ref|YP_006863114.1|	-	1.6e-107	357.2	9.7	1.9e-107	357.0	6.7	1.0	1	0	0	1	1	1	1	Archaeal	ammonia	monooxygenase	subunit	A	(AmoA)
Cys_rich_CPCC	PF14206.1	gi|408405136|ref|YP_006863119.1|	-	0.014	14.9	1.2	0.061	12.8	0.2	2.1	2	0	0	2	2	2	0	Cysteine-rich	CPCC
Zn_ribbon_recom	PF13408.1	gi|408405136|ref|YP_006863119.1|	-	0.081	13.1	0.6	0.081	13.1	0.4	2.0	2	1	0	2	2	2	0	Recombinase	zinc	beta	ribbon	domain
GCIP	PF13324.1	gi|408405137|ref|YP_006863120.1|	-	0.076	12.2	0.0	0.13	11.4	0.0	1.3	1	0	0	1	1	1	0	Grap2	and	cyclin-D-interacting
UDPG_MGDP_dh_N	PF03721.9	gi|408405138|ref|YP_006863121.1|	-	4.4e-36	124.0	0.0	1.1e-35	122.6	0.0	1.6	2	0	0	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
UDPG_MGDP_dh	PF00984.14	gi|408405138|ref|YP_006863121.1|	-	1.8e-20	72.9	0.0	3.8e-20	71.8	0.0	1.6	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	central	domain
UDPG_MGDP_dh_C	PF03720.10	gi|408405138|ref|YP_006863121.1|	-	1.6e-19	70.0	0.0	4.7e-18	65.2	0.0	2.3	2	0	0	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	UDP	binding	domain
NAD_Gly3P_dh_N	PF01210.18	gi|408405138|ref|YP_006863121.1|	-	4.4e-05	23.2	0.1	0.084	12.6	0.0	2.6	2	0	0	2	2	2	2	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
NAD_binding_2	PF03446.10	gi|408405138|ref|YP_006863121.1|	-	0.00053	19.8	0.0	0.0037	17.1	0.0	2.4	3	1	0	3	3	3	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
3HCDH_N	PF02737.13	gi|408405138|ref|YP_006863121.1|	-	0.0021	17.7	0.0	0.0055	16.3	0.0	1.7	2	0	0	2	2	2	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
F420_oxidored	PF03807.12	gi|408405138|ref|YP_006863121.1|	-	0.0054	17.1	0.2	0.26	11.7	0.0	3.1	3	1	0	3	3	3	1	NADP	oxidoreductase	coenzyme	F420-dependent
TrkA_N	PF02254.13	gi|408405138|ref|YP_006863121.1|	-	0.014	15.4	0.0	0.063	13.2	0.0	2.1	2	0	0	2	2	2	0	TrkA-N	domain
Methyltransf_18	PF12847.2	gi|408405138|ref|YP_006863121.1|	-	0.019	15.5	0.0	0.24	11.9	0.0	2.4	1	1	0	1	1	1	0	Methyltransferase	domain
2-Hacid_dh_C	PF02826.14	gi|408405138|ref|YP_006863121.1|	-	0.029	13.5	0.0	0.097	11.8	0.0	1.9	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Methyltransf_31	PF13847.1	gi|408405138|ref|YP_006863121.1|	-	0.12	11.9	0.0	0.58	9.7	0.0	2.1	1	1	0	1	1	1	0	Methyltransferase	domain
XdhC_C	PF13478.1	gi|408405138|ref|YP_006863121.1|	-	0.13	12.5	0.0	0.26	11.6	0.0	1.5	1	0	0	1	1	1	0	XdhC	Rossmann	domain
ThiF	PF00899.16	gi|408405138|ref|YP_006863121.1|	-	0.14	12.0	0.1	4.5	7.1	0.1	2.5	2	0	0	2	2	2	0	ThiF	family
IF-2B	PF01008.12	gi|408405139|ref|YP_006863122.1|	-	1.5e-92	309.5	0.1	1.8e-92	309.3	0.0	1.0	1	0	0	1	1	1	1	Initiation	factor	2	subunit	family
DUF59	PF01883.14	gi|408405140|ref|YP_006863123.1|	-	4.6e-14	52.1	0.1	1e-13	51.0	0.0	1.6	2	0	0	2	2	2	1	Domain	of	unknown	function	DUF59
PqqD	PF05402.7	gi|408405140|ref|YP_006863123.1|	-	1.3e-08	34.6	0.1	2.2e-08	33.9	0.1	1.3	1	0	0	1	1	1	1	Coenzyme	PQQ	synthesis	protein	D	(PqqD)
Methyltransf_4	PF02390.12	gi|408405141|ref|YP_006863124.1|	-	8.9e-12	44.4	0.0	1.1e-11	44.1	0.0	1.1	1	0	0	1	1	1	1	Putative	methyltransferase
Methyltransf_26	PF13659.1	gi|408405141|ref|YP_006863124.1|	-	7.4e-09	35.6	0.0	1.1e-08	35.1	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.7	gi|408405141|ref|YP_006863124.1|	-	1.6e-08	34.9	0.0	3e-08	34.0	0.0	1.5	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|408405141|ref|YP_006863124.1|	-	4.5e-05	23.9	0.0	8e-05	23.1	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|408405141|ref|YP_006863124.1|	-	5.4e-05	22.8	0.0	7e-05	22.4	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Glyco_hydro_67C	PF07477.7	gi|408405141|ref|YP_006863124.1|	-	0.0014	18.1	0.0	0.0018	17.7	0.0	1.1	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	67	C-terminus
Methyltransf_12	PF08242.7	gi|408405141|ref|YP_006863124.1|	-	0.0049	17.3	0.0	0.016	15.6	0.0	1.8	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|408405141|ref|YP_006863124.1|	-	0.0077	15.9	0.0	0.029	14.0	0.0	1.8	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|408405141|ref|YP_006863124.1|	-	0.022	15.1	0.0	0.031	14.6	0.0	1.4	1	0	0	1	1	1	0	Methyltransferase	domain
MTS	PF05175.9	gi|408405141|ref|YP_006863124.1|	-	0.031	13.6	0.0	0.039	13.3	0.0	1.1	1	0	0	1	1	1	0	Methyltransferase	small	domain
Methyltransf_24	PF13578.1	gi|408405141|ref|YP_006863124.1|	-	0.084	13.7	0.0	0.14	12.9	0.0	1.4	1	0	0	1	1	1	0	Methyltransferase	domain
Spermine_synth	PF01564.12	gi|408405141|ref|YP_006863124.1|	-	0.092	11.6	0.0	0.4	9.5	0.0	1.8	1	1	0	1	1	1	0	Spermine/spermidine	synthase
zf-FCS	PF06467.9	gi|408405142|ref|YP_006863125.1|	-	0.00041	19.9	6.5	0.0007	19.1	4.5	1.4	1	0	0	1	1	1	1	MYM-type	Zinc	finger	with	FCS	sequence	motif
zf-C2H2_4	PF13894.1	gi|408405142|ref|YP_006863125.1|	-	0.051	13.9	11.0	0.81	10.1	0.5	2.5	2	0	0	2	2	2	0	C2H2-type	zinc	finger
zf-MYND	PF01753.13	gi|408405142|ref|YP_006863125.1|	-	0.069	13.0	8.3	0.12	12.2	5.7	1.4	1	0	0	1	1	1	0	MYND	finger
zf-C2H2_6	PF13912.1	gi|408405142|ref|YP_006863125.1|	-	1.4	8.8	5.4	2.2	8.2	0.2	2.5	2	0	0	2	2	2	0	C2H2-type	zinc	finger
DUF581	PF04570.9	gi|408405142|ref|YP_006863125.1|	-	2.2	7.6	7.9	4.8	6.5	5.5	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF581)
tRNA-synt_2b	PF00587.20	gi|408405143|ref|YP_006863126.1|	-	1.6e-45	154.8	0.2	2.6e-45	154.0	0.1	1.4	1	0	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
HGTP_anticodon	PF03129.15	gi|408405143|ref|YP_006863126.1|	-	4.9e-18	64.8	0.1	9.8e-18	63.8	0.0	1.5	1	0	0	1	1	1	1	Anticodon	binding	domain
zinc_ribbon_5	PF13719.1	gi|408405143|ref|YP_006863126.1|	-	0.015	14.8	4.2	0.68	9.5	0.2	2.8	3	0	0	3	3	3	0	zinc-ribbon	domain
zf-C3HC	PF07967.8	gi|408405143|ref|YP_006863126.1|	-	0.046	13.4	0.0	0.094	12.4	0.0	1.4	1	0	0	1	1	1	0	C3HC	zinc	finger-like
zinc_ribbon_4	PF13717.1	gi|408405143|ref|YP_006863126.1|	-	0.065	12.9	4.9	2	8.1	0.3	2.8	3	0	0	3	3	3	0	zinc-ribbon	domain
Zn-ribbon_8	PF09723.5	gi|408405143|ref|YP_006863126.1|	-	0.072	13.0	0.2	4.1	7.4	0.0	2.6	2	0	0	2	2	2	0	Zinc	ribbon	domain
Aminotran_1_2	PF00155.16	gi|408405144|ref|YP_006863127.1|	-	4.7e-62	210.0	0.0	5.4e-62	209.8	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Aminotran_5	PF00266.14	gi|408405144|ref|YP_006863127.1|	-	1.1e-05	24.4	0.0	1.9e-05	23.6	0.0	1.3	1	0	0	1	1	1	1	Aminotransferase	class-V
DegT_DnrJ_EryC1	PF01041.12	gi|408405144|ref|YP_006863127.1|	-	4.4e-05	22.6	0.0	0.0001	21.4	0.0	1.5	2	0	0	2	2	2	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Beta_elim_lyase	PF01212.16	gi|408405144|ref|YP_006863127.1|	-	0.00031	19.9	0.0	0.00061	19.0	0.0	1.4	1	0	0	1	1	1	1	Beta-eliminating	lyase
Alliinase_C	PF04864.8	gi|408405144|ref|YP_006863127.1|	-	0.00095	17.9	0.0	0.0027	16.4	0.0	1.7	2	0	0	2	2	2	1	Allinase
Cys_Met_Meta_PP	PF01053.15	gi|408405144|ref|YP_006863127.1|	-	0.0018	16.6	0.0	0.0037	15.6	0.0	1.5	2	0	0	2	2	2	1	Cys/Met	metabolism	PLP-dependent	enzyme
MFS_1	PF07690.11	gi|408405145|ref|YP_006863128.1|	-	6.2e-45	153.4	71.2	2.9e-41	141.3	33.1	2.1	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_2	PF13347.1	gi|408405145|ref|YP_006863128.1|	-	0.00041	18.8	4.6	0.00041	18.8	3.2	3.2	1	1	1	2	2	2	1	MFS/sugar	transport	protein
TfoX_N	PF04993.8	gi|408405146|ref|YP_006863129.1|	-	0.022	14.6	0.0	0.029	14.2	0.0	1.3	1	0	0	1	1	1	0	TfoX	N-terminal	domain
HxlR	PF01638.12	gi|408405148|ref|YP_006863131.1|	-	1.1e-21	76.2	0.3	1.2e-21	76.0	0.2	1.1	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
PadR	PF03551.9	gi|408405148|ref|YP_006863131.1|	-	0.00031	20.4	0.0	0.00046	19.8	0.0	1.2	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
MarR	PF01047.17	gi|408405148|ref|YP_006863131.1|	-	0.0025	17.4	0.2	0.0047	16.6	0.1	1.5	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.1	gi|408405148|ref|YP_006863131.1|	-	0.011	15.0	0.2	0.024	14.0	0.1	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_45	PF14947.1	gi|408405148|ref|YP_006863131.1|	-	0.013	15.2	0.4	0.025	14.4	0.2	1.4	1	1	0	1	1	1	0	Winged	helix-turn-helix
DUF505	PF04458.7	gi|408405148|ref|YP_006863131.1|	-	0.024	12.7	0.0	0.026	12.6	0.0	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF505)
HTH_12	PF08461.5	gi|408405148|ref|YP_006863131.1|	-	0.024	14.3	0.3	0.036	13.7	0.2	1.4	1	0	0	1	1	1	0	Ribonuclease	R	winged-helix	domain
HTH_20	PF12840.2	gi|408405148|ref|YP_006863131.1|	-	0.059	13.1	0.0	0.11	12.3	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
Polyketide_cyc2	PF10604.4	gi|408405149|ref|YP_006863132.1|	-	7.1e-20	71.5	0.0	8.1e-20	71.4	0.0	1.0	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
Polyketide_cyc	PF03364.15	gi|408405149|ref|YP_006863132.1|	-	0.11	12.5	0.0	0.12	12.3	0.0	1.3	1	1	0	1	1	1	0	Polyketide	cyclase	/	dehydrase	and	lipid	transport
Peptidase_M48	PF01435.13	gi|408405150|ref|YP_006863133.1|	-	1.3e-36	126.2	0.0	1.8e-36	125.8	0.0	1.2	1	0	0	1	1	1	1	Peptidase	family	M48
Peptidase_M56	PF05569.6	gi|408405150|ref|YP_006863133.1|	-	2.2e-09	36.6	0.7	2e-08	33.5	0.5	2.2	2	1	0	2	2	2	1	BlaR1	peptidase	M56
NBP1	PF08537.5	gi|408405152|ref|YP_006863135.1|	-	0.02	14.1	4.7	0.023	13.9	3.2	1.1	1	0	0	1	1	1	0	Fungal	Nap	binding	protein	NBP1
LXG	PF04740.7	gi|408405152|ref|YP_006863135.1|	-	0.025	14.3	0.1	0.048	13.4	0.1	1.4	1	0	0	1	1	1	0	LXG	domain	of	WXG	superfamily
S4	PF01479.20	gi|408405152|ref|YP_006863135.1|	-	0.36	10.2	0.1	0.36	10.2	0.1	2.7	3	0	0	3	3	3	0	S4	domain
MRP-S31	PF15433.1	gi|408405152|ref|YP_006863135.1|	-	3.2	7.1	6.2	3.4	6.9	4.3	1.1	1	0	0	1	1	1	0	Mitochondrial	28S	ribosomal	protein	S31
PspA_IM30	PF04012.7	gi|408405153|ref|YP_006863136.1|	-	7.9e-26	90.7	29.2	9.8e-26	90.4	20.2	1.1	1	0	0	1	1	1	1	PspA/IM30	family
Flagellin_C	PF00700.16	gi|408405153|ref|YP_006863136.1|	-	0.025	14.7	1.6	0.025	14.7	1.1	3.2	3	1	0	3	3	3	0	Bacterial	flagellin	C-terminal	helical	region
DUF2559	PF10832.3	gi|408405153|ref|YP_006863136.1|	-	0.086	12.6	3.7	0.13	12.0	0.7	2.7	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2559)
DUF1409	PF07197.7	gi|408405153|ref|YP_006863136.1|	-	2	8.5	11.0	3.1	7.9	0.2	3.5	3	1	0	3	3	3	0	Protein	of	unknown	function	(DUF1409)
Phage_GP20	PF06810.6	gi|408405153|ref|YP_006863136.1|	-	3	7.2	24.5	0.26	10.7	6.2	2.5	1	1	1	2	2	2	0	Phage	minor	structural	protein	GP20
AAA_13	PF13166.1	gi|408405153|ref|YP_006863136.1|	-	3.8	5.8	25.7	9.6	4.5	17.8	1.6	1	1	0	1	1	1	0	AAA	domain
Snf7	PF03357.16	gi|408405153|ref|YP_006863136.1|	-	4.2	6.7	36.1	19	4.5	20.7	2.9	2	1	1	3	3	3	0	Snf7
V_ATPase_I	PF01496.14	gi|408405153|ref|YP_006863136.1|	-	4.5	4.9	20.7	6	4.5	14.0	1.5	1	1	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
Osmo_CC	PF08946.5	gi|408405153|ref|YP_006863136.1|	-	4.6	7.3	12.4	0.22	11.5	0.7	3.9	2	1	0	2	2	2	0	Osmosensory	transporter	coiled	coil
DUF308	PF03729.8	gi|408405154|ref|YP_006863137.1|	-	0.0052	16.7	0.7	1.2	9.1	0.1	2.1	2	0	0	2	2	2	2	Short	repeat	of	unknown	function	(DUF308)
MFS_2	PF13347.1	gi|408405154|ref|YP_006863137.1|	-	0.013	13.9	0.2	0.015	13.7	0.2	1.1	1	0	0	1	1	1	0	MFS/sugar	transport	protein
TctB	PF07331.6	gi|408405154|ref|YP_006863137.1|	-	0.057	13.0	0.0	0.56	9.8	0.0	1.9	2	0	0	2	2	2	0	Tripartite	tricarboxylate	transporter	TctB	family
DUF202	PF02656.10	gi|408405154|ref|YP_006863137.1|	-	0.059	13.6	0.0	5.5	7.2	0.0	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF202)
DUF4401	PF14351.1	gi|408405154|ref|YP_006863137.1|	-	0.1	11.5	2.6	0.23	10.4	1.8	1.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4401)
F420_oxidored	PF03807.12	gi|408405155|ref|YP_006863138.1|	-	3.8e-14	52.8	0.0	8.1e-14	51.8	0.0	1.6	2	0	0	2	2	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_Gly3P_dh_N	PF01210.18	gi|408405155|ref|YP_006863138.1|	-	0.0021	17.7	0.0	0.0035	17.0	0.0	1.4	1	0	0	1	1	1	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
JAB	PF01398.16	gi|408405155|ref|YP_006863138.1|	-	0.034	13.8	0.0	0.11	12.2	0.0	1.8	1	1	0	1	1	1	0	JAB1/Mov34/MPN/PAD-1	ubiquitin	protease
NAD_binding_2	PF03446.10	gi|408405155|ref|YP_006863138.1|	-	0.059	13.2	0.0	0.11	12.2	0.0	1.5	1	0	0	1	1	1	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
adh_short	PF00106.20	gi|408405155|ref|YP_006863138.1|	-	0.093	12.6	0.1	0.17	11.7	0.1	1.3	1	0	0	1	1	1	0	short	chain	dehydrogenase
CorA	PF01544.13	gi|408405156|ref|YP_006863139.1|	-	5.9e-43	146.9	6.3	7.2e-43	146.6	4.3	1.0	1	0	0	1	1	1	1	CorA-like	Mg2+	transporter	protein
His_Phos_1	PF00300.17	gi|408405157|ref|YP_006863140.1|	-	7.3e-32	110.6	0.0	9.3e-32	110.3	0.0	1.1	1	0	0	1	1	1	1	Histidine	phosphatase	superfamily	(branch	1)
RSV_NS2	PF03113.9	gi|408405157|ref|YP_006863140.1|	-	0.055	13.4	0.0	0.098	12.6	0.0	1.5	1	0	0	1	1	1	0	Respiratory	synctial	virus	non-structural	protein	NS2
Flavi_M	PF01004.14	gi|408405158|ref|YP_006863141.1|	-	0.091	12.2	0.1	0.12	11.8	0.1	1.4	1	0	0	1	1	1	0	Flavivirus	envelope	glycoprotein	M
Ion_trans_N	PF08412.5	gi|408405158|ref|YP_006863141.1|	-	0.51	9.6	4.2	0.19	11.0	0.3	1.9	1	1	1	2	2	2	0	Ion	transport	protein	N-terminal
COX2	PF00116.15	gi|408405159|ref|YP_006863142.1|	-	3.5e-26	91.4	0.5	1.3e-22	79.8	0.0	2.1	1	1	1	2	2	2	2	Cytochrome	C	oxidase	subunit	II,	periplasmic	domain
Cupredoxin_1	PF13473.1	gi|408405159|ref|YP_006863142.1|	-	1e-06	28.5	0.0	1.4e-06	28.1	0.0	1.3	1	0	0	1	1	1	1	Cupredoxin-like	domain
COX1	PF00115.15	gi|408405160|ref|YP_006863143.1|	-	3.8e-142	474.0	64.3	4.8e-142	473.7	44.6	1.0	1	0	0	1	1	1	1	Cytochrome	C	and	Quinol	oxidase	polypeptide	I
Mpv17_PMP22	PF04117.7	gi|408405160|ref|YP_006863143.1|	-	0.019	14.5	2.0	0.019	14.5	1.4	3.9	4	1	0	4	4	4	0	Mpv17	/	PMP22	family
Copper-bind	PF00127.15	gi|408405161|ref|YP_006863144.1|	-	9.1e-15	54.7	0.1	3e-09	36.9	0.0	2.3	2	0	0	2	2	2	2	Copper	binding	proteins,	plastocyanin/azurin	family
Cupredoxin_1	PF13473.1	gi|408405161|ref|YP_006863144.1|	-	1.2e-13	50.7	0.1	1.6e-10	40.7	0.0	2.4	2	1	0	2	2	2	2	Cupredoxin-like	domain
COX15-CtaA	PF02628.10	gi|408405162|ref|YP_006863145.1|	-	1.3e-27	96.5	7.5	1.6e-27	96.2	5.2	1.1	1	0	0	1	1	1	1	Cytochrome	oxidase	assembly	protein
Cytochrom_B561	PF03188.11	gi|408405162|ref|YP_006863145.1|	-	0.81	9.5	7.9	4.2	7.1	5.5	2.0	1	1	0	1	1	1	0	Eukaryotic	cytochrome	b561
DUF2530	PF10745.4	gi|408405162|ref|YP_006863145.1|	-	2.3	8.2	7.3	0.78	9.7	2.3	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2530)
Fe-ADH	PF00465.14	gi|408405164|ref|YP_006863147.1|	-	7.2e-51	172.9	0.0	2e-50	171.4	0.0	1.6	1	1	0	1	1	1	1	Iron-containing	alcohol	dehydrogenase
Fe-ADH_2	PF13685.1	gi|408405164|ref|YP_006863147.1|	-	1.1e-17	64.1	0.0	1.6e-17	63.6	0.0	1.2	1	0	0	1	1	1	1	Iron-containing	alcohol	dehydrogenase
Polyketide_cyc2	PF10604.4	gi|408405165|ref|YP_006863148.1|	-	1.2e-11	44.8	0.0	1.5e-11	44.6	0.0	1.1	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
AHSA1	PF08327.6	gi|408405165|ref|YP_006863148.1|	-	9.5e-09	35.4	0.0	1.3e-08	34.9	0.0	1.2	1	0	0	1	1	1	1	Activator	of	Hsp90	ATPase	homolog	1-like	protein
Polyketide_cyc	PF03364.15	gi|408405165|ref|YP_006863148.1|	-	9.8e-07	28.8	0.0	1.5e-06	28.2	0.0	1.3	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
DUF217	PF02697.9	gi|408405165|ref|YP_006863148.1|	-	0.0015	18.7	0.1	0.0034	17.5	0.0	1.6	1	0	0	1	1	1	1	Uncharacterized	ACR,	COG1753
DUF3213	PF11491.3	gi|408405166|ref|YP_006863149.1|	-	0.056	13.3	0.0	0.056	13.3	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3213)
DUF72	PF01904.13	gi|408405169|ref|YP_006863152.1|	-	8.9e-14	51.7	0.2	1.5e-13	51.0	0.1	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF72
Phage_int_SAM_1	PF02899.12	gi|408405169|ref|YP_006863152.1|	-	0.0045	17.1	0.1	1.5	8.9	0.1	2.6	1	1	1	2	2	2	2	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_4	PF13495.1	gi|408405169|ref|YP_006863152.1|	-	0.027	14.7	0.6	2.7	8.3	0.0	2.6	3	0	0	3	3	3	0	Phage	integrase,	N-terminal	SAM-like	domain
Fip1	PF05182.8	gi|408405169|ref|YP_006863152.1|	-	1.8	7.8	4.7	2.7	7.3	0.2	2.8	3	0	0	3	3	3	0	Fip1	motif
HTH_45	PF14947.1	gi|408405171|ref|YP_006863154.1|	-	0.011	15.5	0.2	0.011	15.5	0.1	1.0	1	0	0	1	1	1	0	Winged	helix-turn-helix
Dodecin	PF07311.7	gi|408405172|ref|YP_006863155.1|	-	3.8e-19	68.4	0.3	4.9e-19	68.1	0.2	1.1	1	0	0	1	1	1	1	Dodecin
DUF77	PF01910.12	gi|408405173|ref|YP_006863156.1|	-	3.6e-25	87.4	0.7	4.1e-25	87.2	0.5	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF77
Bac_luciferase	PF00296.15	gi|408405174|ref|YP_006863157.1|	-	1.6e-51	175.2	0.0	2e-51	174.9	0.0	1.1	1	0	0	1	1	1	1	Luciferase-like	monooxygenase
Usp	PF00582.21	gi|408405175|ref|YP_006863158.1|	-	7.8e-30	103.9	1.7	1.4e-29	103.0	1.2	1.4	1	1	0	1	1	1	1	Universal	stress	protein	family
Toprim_4	PF13662.1	gi|408405175|ref|YP_006863158.1|	-	0.0038	17.1	0.0	0.0062	16.5	0.0	1.3	1	0	0	1	1	1	1	Toprim	domain
DXP_reductoisom	PF02670.11	gi|408405175|ref|YP_006863158.1|	-	0.031	14.8	0.1	0.27	11.7	0.1	2.1	1	1	0	1	1	1	0	1-deoxy-D-xylulose	5-phosphate	reductoisomerase
HSP20	PF00011.16	gi|408405176|ref|YP_006863159.1|	-	0.00066	19.4	0.1	0.0011	18.8	0.1	1.3	1	0	0	1	1	1	1	Hsp20/alpha	crystallin	family
Hjc	PF01870.13	gi|408405176|ref|YP_006863159.1|	-	0.13	11.8	0.0	0.18	11.3	0.0	1.2	1	0	0	1	1	1	0	Archaeal	holliday	junction	resolvase	(hjc)
HSP20	PF00011.16	gi|408405177|ref|YP_006863160.1|	-	7.1e-09	35.4	0.0	7.2e-09	35.4	0.0	1.0	1	0	0	1	1	1	1	Hsp20/alpha	crystallin	family
zf-C2H2_2	PF12756.2	gi|408405178|ref|YP_006863161.1|	-	0.0049	16.9	0.1	0.0077	16.3	0.1	1.3	1	0	0	1	1	1	1	C2H2	type	zinc-finger	(2	copies)
Afaf	PF15339.1	gi|408405178|ref|YP_006863161.1|	-	0.0065	16.0	0.2	0.011	15.3	0.2	1.3	1	0	0	1	1	1	1	Acrosome	formation-associated	factor
zf-C2H2_4	PF13894.1	gi|408405178|ref|YP_006863161.1|	-	0.081	13.2	0.3	0.15	12.4	0.2	1.4	1	0	0	1	1	1	0	C2H2-type	zinc	finger
zf-DBF	PF07535.7	gi|408405178|ref|YP_006863161.1|	-	0.11	12.2	0.5	0.17	11.5	0.3	1.3	1	0	0	1	1	1	0	DBF	zinc	finger
zf-C2H2_jaz	PF12171.3	gi|408405178|ref|YP_006863161.1|	-	0.14	12.3	0.7	0.22	11.7	0.5	1.4	1	0	0	1	1	1	0	Zinc-finger	double-stranded	RNA-binding
DUF1440	PF07274.7	gi|408405178|ref|YP_006863161.1|	-	0.14	12.1	2.7	0.36	10.8	0.6	2.3	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1440)
zf-C2H2	PF00096.21	gi|408405178|ref|YP_006863161.1|	-	0.15	12.4	0.4	0.27	11.6	0.3	1.4	1	0	0	1	1	1	0	Zinc	finger,	C2H2	type
Mito_carr	PF00153.22	gi|408405178|ref|YP_006863161.1|	-	1.4	8.6	7.0	7.4	6.3	2.6	3.1	2	1	1	3	3	3	0	Mitochondrial	carrier	protein
Gly-zipper_OmpA	PF13436.1	gi|408405178|ref|YP_006863161.1|	-	5	6.8	12.0	0.73	9.5	1.7	3.3	2	1	0	3	3	3	0	Glycine-zipper	containing	OmpA-like	membrane	domain
zf-H2C2_2	PF13465.1	gi|408405178|ref|YP_006863161.1|	-	9.2	6.7	6.2	0.84	10.0	0.1	2.2	2	0	0	2	2	2	0	Zinc-finger	double	domain
KGG	PF10685.4	gi|408405179|ref|YP_006863162.1|	-	0.0013	18.6	0.2	0.0013	18.6	0.2	2.7	2	1	1	3	3	3	2	Stress-induced	bacterial	acidophilic	repeat	motif
zf-C2H2_4	PF13894.1	gi|408405180|ref|YP_006863163.1|	-	0.034	14.4	0.0	0.051	13.9	0.0	1.3	1	0	0	1	1	1	0	C2H2-type	zinc	finger
zf-C2H2	PF00096.21	gi|408405180|ref|YP_006863163.1|	-	0.13	12.6	0.1	0.25	11.7	0.1	1.5	1	1	0	1	1	1	0	Zinc	finger,	C2H2	type
Abhydrolase_1	PF00561.15	gi|408405183|ref|YP_006863166.1|	-	1.1e-14	54.5	0.5	5.6e-14	52.2	0.1	2.2	2	1	0	2	2	2	1	alpha/beta	hydrolase	fold
Abhydrolase_6	PF12697.2	gi|408405183|ref|YP_006863166.1|	-	3.9e-13	49.8	0.0	7.8e-13	48.8	0.0	1.4	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_5	PF12695.2	gi|408405183|ref|YP_006863166.1|	-	1.3e-08	34.7	0.0	0.00026	20.7	0.0	2.2	2	0	0	2	2	2	2	Alpha/beta	hydrolase	family
DLH	PF01738.13	gi|408405183|ref|YP_006863166.1|	-	3.8e-07	29.6	0.0	0.00018	20.8	0.0	2.5	2	0	0	2	2	2	2	Dienelactone	hydrolase	family
FSH1	PF03959.8	gi|408405183|ref|YP_006863166.1|	-	1.6e-05	24.4	0.3	0.0016	17.9	0.0	3.2	2	1	2	4	4	4	1	Serine	hydrolase	(FSH1)
PhaC_N	PF07167.8	gi|408405183|ref|YP_006863166.1|	-	0.00021	20.7	0.1	0.00044	19.7	0.1	1.5	1	0	0	1	1	1	1	Poly-beta-hydroxybutyrate	polymerase	(PhaC)	N-terminus
DUF3141	PF11339.3	gi|408405183|ref|YP_006863166.1|	-	0.00046	18.6	0.2	0.0016	16.8	0.0	1.9	2	1	0	2	2	2	1	Protein	of	unknown	function	(DUF3141)
BAAT_C	PF08840.6	gi|408405183|ref|YP_006863166.1|	-	0.077	12.6	0.0	0.27	10.9	0.0	1.8	2	0	0	2	2	2	0	BAAT	/	Acyl-CoA	thioester	hydrolase	C	terminal
Cpn60_TCP1	PF00118.19	gi|408405184|ref|YP_006863167.1|	-	1.4e-164	548.3	10.5	1.6e-164	548.1	7.3	1.0	1	0	0	1	1	1	1	TCP-1/cpn60	chaperonin	family
DUF3088	PF11287.3	gi|408405184|ref|YP_006863167.1|	-	0.061	12.7	0.0	0.22	10.9	0.0	2.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3088)
MEDS	PF14417.1	gi|408405186|ref|YP_006863169.1|	-	0.012	14.7	0.0	0.013	14.5	0.0	1.0	1	0	0	1	1	1	0	MEDS:	MEthanogen/methylotroph,	DcmR	Sensory	domain
MutS_V	PF00488.16	gi|408405186|ref|YP_006863169.1|	-	0.024	14.0	0.0	0.026	13.9	0.0	1.0	1	0	0	1	1	1	0	MutS	domain	V
IU_nuc_hydro	PF01156.14	gi|408405188|ref|YP_006863171.1|	-	4.7e-73	246.1	0.0	5.6e-73	245.8	0.0	1.0	1	0	0	1	1	1	1	Inosine-uridine	preferring	nucleoside	hydrolase
PfkB	PF00294.19	gi|408405189|ref|YP_006863172.1|	-	1.1e-40	139.7	0.1	1.2e-40	139.4	0.1	1.0	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
Phos_pyr_kin	PF08543.7	gi|408405189|ref|YP_006863172.1|	-	0.0067	15.6	0.0	0.013	14.7	0.0	1.5	1	0	0	1	1	1	1	Phosphomethylpyrimidine	kinase
Fer4	PF00037.22	gi|408405191|ref|YP_006863174.1|	-	3.5e-09	35.8	11.0	5.7e-06	25.7	0.6	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.2	gi|408405191|ref|YP_006863174.1|	-	7.6e-09	35.8	27.4	4.2e-06	27.0	6.7	2.3	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|408405191|ref|YP_006863174.1|	-	8.7e-08	32.3	6.2	3.3e-07	30.4	4.3	1.9	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_8	PF13183.1	gi|408405191|ref|YP_006863174.1|	-	1.7e-07	31.1	22.4	4.1e-05	23.5	5.4	2.2	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_2	PF12797.2	gi|408405191|ref|YP_006863174.1|	-	3.5e-07	29.7	9.8	0.003	17.3	1.2	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_10	PF13237.1	gi|408405191|ref|YP_006863174.1|	-	1.5e-06	27.8	19.9	2.1e-05	24.2	6.7	2.1	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.2	gi|408405191|ref|YP_006863174.1|	-	2.2e-06	27.2	11.4	0.0021	17.8	2.7	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_4	PF12800.2	gi|408405191|ref|YP_006863174.1|	-	5.6e-06	26.2	6.2	0.029	14.6	1.0	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_15	PF13459.1	gi|408405191|ref|YP_006863174.1|	-	1.5e-05	25.4	7.6	0.0095	16.4	1.2	2.6	2	1	0	2	2	2	2	4Fe-4S	single	cluster	domain
Fer4_21	PF14697.1	gi|408405191|ref|YP_006863174.1|	-	1.6e-05	24.6	7.4	0.00056	19.7	5.1	2.3	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_17	PF13534.1	gi|408405191|ref|YP_006863174.1|	-	1.9e-05	24.9	5.8	0.00032	21.0	4.8	2.1	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_18	PF13746.1	gi|408405191|ref|YP_006863174.1|	-	3.8e-05	24.0	7.5	6e-05	23.3	3.8	2.1	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.1	gi|408405191|ref|YP_006863174.1|	-	3.9e-05	24.3	6.1	0.0028	18.3	5.0	2.4	1	1	1	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_13	PF13370.1	gi|408405191|ref|YP_006863174.1|	-	4.8e-05	23.6	7.8	0.01	16.1	0.1	2.8	3	0	0	3	3	3	2	4Fe-4S	single	cluster	domain
Fer4_11	PF13247.1	gi|408405191|ref|YP_006863174.1|	-	0.024	14.5	3.1	2.5	8.0	0.4	2.2	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_3	PF12798.2	gi|408405191|ref|YP_006863174.1|	-	0.051	14.1	14.9	0.28	11.8	0.7	2.4	2	0	0	2	2	2	0	4Fe-4S	binding	domain
HTH_45	PF14947.1	gi|408405194|ref|YP_006863177.1|	-	8.7e-23	79.9	2.1	9.9e-23	79.7	1.4	1.0	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF4364	PF14277.1	gi|408405194|ref|YP_006863177.1|	-	0.00016	21.2	0.3	0.00018	21.1	0.2	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4364)
HTH_27	PF13463.1	gi|408405194|ref|YP_006863177.1|	-	0.0098	16.1	0.0	0.013	15.7	0.0	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
Omptin	PF01278.15	gi|408405194|ref|YP_006863177.1|	-	0.03	13.4	0.0	0.037	13.1	0.0	1.1	1	0	0	1	1	1	0	Omptin	family
PMT_C	PF11647.3	gi|408405194|ref|YP_006863177.1|	-	0.063	12.8	0.7	0.21	11.2	0.5	1.8	1	1	0	1	1	1	0	C-terminal	region	of	Pasteurella	multocida	toxin	residues	569-1285
PadR	PF03551.9	gi|408405194|ref|YP_006863177.1|	-	0.083	12.6	0.5	0.11	12.2	0.4	1.4	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
Response_reg	PF00072.19	gi|408405195|ref|YP_006863178.1|	-	4.2e-19	68.5	0.2	4.8e-19	68.4	0.1	1.0	1	0	0	1	1	1	1	Response	regulator	receiver	domain
DUF1900	PF08954.6	gi|408405195|ref|YP_006863178.1|	-	0.025	14.1	0.1	0.03	13.8	0.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1900)
Pyridox_oxidase	PF01243.15	gi|408405196|ref|YP_006863179.1|	-	8.7e-15	54.5	0.0	1.1e-14	54.1	0.0	1.2	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Pyridox_ox_2	PF12900.2	gi|408405196|ref|YP_006863179.1|	-	1.1e-12	48.0	0.0	1.2e-12	47.8	0.0	1.1	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Pyridox_oxase_2	PF12766.2	gi|408405196|ref|YP_006863179.1|	-	0.027	14.7	0.0	0.046	14.0	0.0	1.4	1	0	0	1	1	1	0	Pyridoxamine	5'-phosphate	oxidase
Pyrid_oxidase_2	PF13883.1	gi|408405196|ref|YP_006863179.1|	-	0.059	13.1	0.0	0.067	12.9	0.0	1.2	1	0	0	1	1	1	0	Pyridoxamine	5'-phosphate	oxidase
DUF3578	PF12102.3	gi|408405196|ref|YP_006863179.1|	-	0.07	12.7	0.3	0.12	11.9	0.2	1.4	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF3578)
DUF447	PF04289.7	gi|408405196|ref|YP_006863179.1|	-	0.07	12.6	0.1	0.082	12.4	0.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF447)
zf-C2H2_4	PF13894.1	gi|408405197|ref|YP_006863180.1|	-	0.0078	16.4	0.2	0.014	15.6	0.1	1.4	1	0	0	1	1	1	1	C2H2-type	zinc	finger
zf-C2H2	PF00096.21	gi|408405197|ref|YP_006863180.1|	-	0.037	14.3	0.2	0.07	13.5	0.1	1.5	1	0	0	1	1	1	0	Zinc	finger,	C2H2	type
zf-DBF	PF07535.7	gi|408405197|ref|YP_006863180.1|	-	0.12	12.1	0.2	0.23	11.1	0.2	1.5	1	0	0	1	1	1	0	DBF	zinc	finger
DUF4157	PF13699.1	gi|408405203|ref|YP_006863186.1|	-	0.11	12.7	0.0	0.18	11.9	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4157)
FANCL_C	PF11793.3	gi|408405203|ref|YP_006863186.1|	-	0.14	12.1	0.2	8.8	6.3	0.1	2.3	2	0	0	2	2	2	0	FANCL	C-terminal	domain
HTH_45	PF14947.1	gi|408405204|ref|YP_006863187.1|	-	5.2e-15	55.0	0.1	6.4e-15	54.7	0.1	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
Rubrerythrin	PF02915.12	gi|408405205|ref|YP_006863188.1|	-	0.011	16.0	0.6	0.013	15.8	0.4	1.1	1	0	0	1	1	1	0	Rubrerythrin
Cep57_MT_bd	PF06657.8	gi|408405205|ref|YP_006863188.1|	-	0.023	14.6	0.7	2.1	8.3	0.0	2.1	2	0	0	2	2	2	0	Centrosome	microtubule-binding	domain	of	Cep57
Ferritin	PF00210.19	gi|408405205|ref|YP_006863188.1|	-	0.026	14.2	0.7	0.029	14.1	0.5	1.2	1	0	0	1	1	1	0	Ferritin-like	domain
DUF3243	PF11588.3	gi|408405205|ref|YP_006863188.1|	-	0.038	13.9	0.8	0.052	13.5	0.5	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3243)
Ferritin_2	PF13668.1	gi|408405205|ref|YP_006863188.1|	-	0.047	13.6	0.1	0.057	13.3	0.1	1.2	1	0	0	1	1	1	0	Ferritin-like	domain
DUF455	PF04305.9	gi|408405205|ref|YP_006863188.1|	-	0.063	12.5	0.1	0.064	12.5	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF455)
DUF2383	PF09537.5	gi|408405205|ref|YP_006863188.1|	-	0.066	13.4	0.5	0.081	13.1	0.4	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF2383)
DNA_repr_REX1B	PF14966.1	gi|408405205|ref|YP_006863188.1|	-	0.1	12.9	0.2	0.12	12.7	0.2	1.3	1	0	0	1	1	1	0	DNA	repair	REX1-B
HEM4	PF02602.10	gi|408405206|ref|YP_006863189.1|	-	4.2e-47	160.3	0.3	4.8e-47	160.1	0.2	1.0	1	0	0	1	1	1	1	Uroporphyrinogen-III	synthase	HemD
NMT1	PF09084.6	gi|408405206|ref|YP_006863189.1|	-	0.009	15.6	0.0	0.31	10.5	0.0	2.5	2	1	0	2	2	2	1	NMT1/THI5	like
Nitro_FeMo-Co	PF02579.12	gi|408405206|ref|YP_006863189.1|	-	0.01	15.8	0.0	4.4	7.4	0.0	3.3	4	0	0	4	4	4	0	Dinitrogenase	iron-molybdenum	cofactor
TP_methylase	PF00590.15	gi|408405207|ref|YP_006863190.1|	-	4.7e-50	170.2	0.2	5.4e-50	170.0	0.1	1.0	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
Porphobil_deam	PF01379.15	gi|408405208|ref|YP_006863191.1|	-	3e-73	245.2	0.0	4.5e-73	244.7	0.0	1.2	1	0	0	1	1	1	1	Porphobilinogen	deaminase,	dipyromethane	cofactor	binding	domain
Porphobil_deamC	PF03900.10	gi|408405208|ref|YP_006863191.1|	-	2.2e-17	62.9	0.5	5.7e-17	61.5	0.1	1.9	2	0	0	2	2	2	1	Porphobilinogen	deaminase,	C-terminal	domain
YfdX	PF10938.3	gi|408405208|ref|YP_006863191.1|	-	0.0024	17.5	0.1	0.0055	16.3	0.0	1.5	1	1	0	1	1	1	1	YfdX	protein
LysR_substrate	PF03466.15	gi|408405208|ref|YP_006863191.1|	-	0.025	13.6	0.0	5.1	6.1	0.0	2.7	2	1	0	2	2	2	0	LysR	substrate	binding	domain
Aminotran_3	PF00202.16	gi|408405209|ref|YP_006863192.1|	-	4.8e-60	203.2	0.6	6.1e-60	202.8	0.4	1.1	1	0	0	1	1	1	1	Aminotransferase	class-III
Aminotran_1_2	PF00155.16	gi|408405209|ref|YP_006863192.1|	-	1.4e-06	27.5	0.0	2e-06	26.9	0.0	1.3	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
DUF3108	PF11306.3	gi|408405211|ref|YP_006863194.1|	-	2.3e-07	30.7	0.3	1.3e-05	24.9	0.0	2.1	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF3108)
HTH_45	PF14947.1	gi|408405212|ref|YP_006863195.1|	-	2.9e-21	75.0	2.6	3.1e-21	74.9	1.8	1.0	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF4364	PF14277.1	gi|408405212|ref|YP_006863195.1|	-	0.00012	21.6	0.5	0.00014	21.5	0.4	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4364)
HTH_27	PF13463.1	gi|408405212|ref|YP_006863195.1|	-	0.037	14.3	0.1	0.05	13.9	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
APC2	PF08672.6	gi|408405212|ref|YP_006863195.1|	-	0.049	13.8	0.2	0.085	13.1	0.1	1.5	1	0	0	1	1	1	0	Anaphase	promoting	complex	(APC)	subunit	2
HTH_24	PF13412.1	gi|408405212|ref|YP_006863195.1|	-	0.12	11.7	0.0	0.18	11.2	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
UPF0181	PF03701.9	gi|408405213|ref|YP_006863196.1|	-	0.013	14.7	0.6	0.013	14.7	0.4	2.8	3	1	1	4	4	4	0	Uncharacterised	protein	family	(UPF0181)
HisKA_3	PF07730.8	gi|408405213|ref|YP_006863196.1|	-	0.017	15.4	9.7	0.39	11.1	0.3	3.1	1	1	1	2	2	2	0	Histidine	kinase
Laminin_II	PF06009.7	gi|408405213|ref|YP_006863196.1|	-	0.038	13.7	5.9	0.07	12.8	3.4	1.8	1	1	1	2	2	2	0	Laminin	Domain	II
DUF948	PF06103.6	gi|408405213|ref|YP_006863196.1|	-	0.11	12.3	0.8	0.24	11.2	0.5	1.7	1	1	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF948)
DUF2250	PF10007.4	gi|408405213|ref|YP_006863196.1|	-	0.15	12.0	1.7	5.3	7.0	0.1	2.4	1	1	1	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
DUF99	PF01949.11	gi|408405213|ref|YP_006863196.1|	-	0.16	11.0	2.0	0.2	10.7	1.4	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	DUF99
Relaxase	PF03432.9	gi|408405213|ref|YP_006863196.1|	-	0.19	11.0	2.6	0.24	10.7	1.8	1.1	1	0	0	1	1	1	0	Relaxase/Mobilisation	nuclease	domain
Prominin	PF05478.6	gi|408405213|ref|YP_006863196.1|	-	0.22	9.0	1.4	0.26	8.7	0.9	1.2	1	0	0	1	1	1	0	Prominin
PhageMin_Tail	PF10145.4	gi|408405213|ref|YP_006863196.1|	-	0.28	10.7	4.8	1.8	8.1	1.4	2.4	1	1	1	3	3	3	0	Phage-related	minor	tail	protein
HisKA	PF00512.20	gi|408405213|ref|YP_006863196.1|	-	1.2	9.2	7.9	3.8e+02	1.1	5.5	3.0	1	1	0	1	1	1	0	His	Kinase	A	(phospho-acceptor)	domain
DUF2203	PF09969.4	gi|408405213|ref|YP_006863196.1|	-	1.3	9.2	4.3	3.9	7.7	3.0	1.8	1	1	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2203)
WXG100	PF06013.7	gi|408405213|ref|YP_006863196.1|	-	1.9	8.5	5.8	11	6.0	1.0	2.9	1	1	0	2	2	2	0	Proteins	of	100	residues	with	WXG
YtxH	PF12732.2	gi|408405213|ref|YP_006863196.1|	-	2.5	8.5	10.7	7.7e+02	0.5	7.4	2.5	1	1	0	1	1	1	0	YtxH-like	protein
Nop25	PF09805.4	gi|408405213|ref|YP_006863196.1|	-	4.8	7.2	8.6	6.8	6.7	6.0	1.3	1	0	0	1	1	1	0	Nucleolar	protein	12	(25kDa)
PDH	PF02153.12	gi|408405214|ref|YP_006863197.1|	-	0.0069	15.3	2.8	0.36	9.6	0.0	2.6	2	1	1	3	3	3	1	Prephenate	dehydrogenase
YkyA	PF10368.4	gi|408405214|ref|YP_006863197.1|	-	0.0069	15.7	5.5	0.011	15.0	3.8	1.5	1	1	0	1	1	1	1	Putative	cell-wall	binding	lipoprotein
Laminin_II	PF06009.7	gi|408405214|ref|YP_006863197.1|	-	0.008	15.9	7.5	0.11	12.2	2.5	2.2	1	1	1	2	2	2	2	Laminin	Domain	II
YlbD_coat	PF14071.1	gi|408405214|ref|YP_006863197.1|	-	0.009	16.0	0.4	3.3	7.7	0.0	2.4	1	1	1	2	2	2	1	Putative	coat	protein
HisKA	PF00512.20	gi|408405214|ref|YP_006863197.1|	-	0.01	15.7	3.2	0.24	11.3	0.3	3.2	1	1	1	2	2	2	0	His	Kinase	A	(phospho-acceptor)	domain
DHC_N2	PF08393.8	gi|408405214|ref|YP_006863197.1|	-	0.028	12.9	0.3	0.057	11.9	0.2	1.6	1	1	0	1	1	1	0	Dynein	heavy	chain,	N-terminal	region	2
TBPIP	PF07106.8	gi|408405214|ref|YP_006863197.1|	-	0.033	13.7	5.2	0.037	13.5	1.8	2.0	1	1	1	2	2	2	0	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
Syntaxin-6_N	PF09177.6	gi|408405214|ref|YP_006863197.1|	-	0.034	14.5	3.5	5.3	7.5	1.7	2.7	1	1	1	2	2	2	0	Syntaxin	6,	N-terminal
Med9	PF07544.8	gi|408405214|ref|YP_006863197.1|	-	0.042	13.5	2.7	1.2	8.9	0.5	2.7	1	1	1	2	2	2	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
AAA_13	PF13166.1	gi|408405214|ref|YP_006863197.1|	-	0.042	12.3	2.8	0.049	12.0	1.9	1.1	1	0	0	1	1	1	0	AAA	domain
DUF1664	PF07889.7	gi|408405214|ref|YP_006863197.1|	-	0.048	13.4	5.5	0.11	12.2	0.6	2.6	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1664)
PLU-1	PF08429.6	gi|408405214|ref|YP_006863197.1|	-	0.051	12.4	1.4	0.16	10.8	0.8	1.7	1	1	1	2	2	2	0	PLU-1-like	protein
D5_N	PF08706.6	gi|408405214|ref|YP_006863197.1|	-	0.056	13.5	0.7	0.15	12.1	0.5	1.8	1	1	0	1	1	1	0	D5	N	terminal	like
Coa1	PF08695.5	gi|408405214|ref|YP_006863197.1|	-	0.063	12.7	0.3	0.13	11.7	0.1	1.6	2	0	0	2	2	2	0	Cytochrome	oxidase	complex	assembly	protein	1
YtxH	PF12732.2	gi|408405214|ref|YP_006863197.1|	-	0.071	13.4	6.4	1.1	9.6	0.1	2.9	2	1	0	2	2	2	0	YtxH-like	protein
Apolipoprotein	PF01442.13	gi|408405214|ref|YP_006863197.1|	-	0.083	12.3	2.5	3.6	7.0	0.1	2.2	1	1	1	2	2	2	0	Apolipoprotein	A1/A4/E	domain
WXG100	PF06013.7	gi|408405214|ref|YP_006863197.1|	-	0.094	12.7	2.9	30	4.7	0.0	3.8	3	1	1	5	5	3	0	Proteins	of	100	residues	with	WXG
Bacillus_HBL	PF05791.6	gi|408405214|ref|YP_006863197.1|	-	0.096	12.0	0.9	1.3	8.3	0.3	2.3	1	1	1	2	2	2	0	Bacillus	haemolytic	enterotoxin	(HBL)
HisKA_3	PF07730.8	gi|408405214|ref|YP_006863197.1|	-	0.15	12.3	6.6	38	4.7	0.0	4.7	1	1	4	5	5	5	0	Histidine	kinase
CENP-Q	PF13094.1	gi|408405214|ref|YP_006863197.1|	-	0.16	11.9	2.9	0.22	11.5	0.8	1.9	1	1	1	2	2	2	0	CENP-Q,	a	CENPA-CAD	centromere	complex	subunit
DUF2120	PF09893.4	gi|408405214|ref|YP_006863197.1|	-	0.17	11.8	4.7	0.33	10.8	0.9	2.2	1	1	1	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2120)
DASH_Duo1	PF08651.5	gi|408405214|ref|YP_006863197.1|	-	0.18	11.3	5.5	1.7	8.2	0.6	3.4	1	1	1	3	3	3	0	DASH	complex	subunit	Duo1
CHASE3	PF05227.8	gi|408405214|ref|YP_006863197.1|	-	0.2	11.3	4.1	0.52	9.9	2.2	2.2	1	1	1	2	2	2	0	CHASE3	domain
HR1	PF02185.11	gi|408405214|ref|YP_006863197.1|	-	0.22	11.2	3.3	0.81	9.4	0.6	2.8	1	1	2	3	3	3	0	Hr1	repeat
Prominin	PF05478.6	gi|408405214|ref|YP_006863197.1|	-	0.25	8.8	2.5	1.3	6.4	0.6	1.9	1	1	1	2	2	2	0	Prominin
Baculo_p24	PF05073.7	gi|408405214|ref|YP_006863197.1|	-	0.26	10.8	2.7	4.1	6.9	0.7	2.2	1	1	0	2	2	2	0	Baculovirus	P24	capsid	protein
Vps53_N	PF04100.7	gi|408405214|ref|YP_006863197.1|	-	0.4	9.4	4.1	0.2	10.3	0.6	1.9	1	1	1	2	2	2	0	Vps53-like,	N-terminal
DUF16	PF01519.11	gi|408405214|ref|YP_006863197.1|	-	0.64	10.2	3.1	3.2	8.0	2.1	2.1	1	1	0	1	1	1	0	Protein	of	unknown	function	DUF16
DUF883	PF05957.8	gi|408405214|ref|YP_006863197.1|	-	0.66	10.4	5.2	9.5	6.6	0.1	3.2	1	1	3	4	4	4	0	Bacterial	protein	of	unknown	function	(DUF883)
Latarcin	PF10279.4	gi|408405214|ref|YP_006863197.1|	-	0.81	9.9	5.8	3.9	7.7	3.3	2.6	1	1	1	2	2	2	0	Latarcin	precursor
DUF2203	PF09969.4	gi|408405214|ref|YP_006863197.1|	-	0.9	9.7	4.8	5	7.3	2.5	2.4	1	1	1	2	2	2	0	Uncharacterized	conserved	protein	(DUF2203)
ApoLp-III	PF07464.6	gi|408405214|ref|YP_006863197.1|	-	0.92	9.5	7.9	2.8	7.9	4.2	2.2	1	1	1	2	2	2	0	Apolipophorin-III	precursor	(apoLp-III)
DUF2666	PF10869.3	gi|408405214|ref|YP_006863197.1|	-	1.6	8.7	5.7	3	7.8	1.2	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2666)
EVE	PF01878.13	gi|408405215|ref|YP_006863198.1|	-	6.1e-39	133.3	0.0	7e-39	133.1	0.0	1.0	1	0	0	1	1	1	1	EVE	domain
DUF288	PF03385.12	gi|408405217|ref|YP_006863200.1|	-	0.085	11.2	0.1	0.098	11.1	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF288
Pyr_redox_2	PF07992.9	gi|408405218|ref|YP_006863201.1|	-	9.4e-05	22.3	0.0	0.00014	21.8	0.0	1.4	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_2	PF07992.9	gi|408405219|ref|YP_006863202.1|	-	4e-10	39.9	0.0	5.2e-10	39.5	0.0	1.2	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.1	gi|408405219|ref|YP_006863202.1|	-	1.9e-05	24.8	1.6	0.00066	19.7	0.0	2.1	1	1	1	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.9	gi|408405219|ref|YP_006863202.1|	-	0.00011	20.7	0.5	0.092	11.1	0.1	2.1	2	0	0	2	2	2	2	HI0933-like	protein
DAO	PF01266.19	gi|408405219|ref|YP_006863202.1|	-	0.00018	20.5	7.2	0.013	14.4	1.0	2.1	1	1	1	2	2	2	2	FAD	dependent	oxidoreductase
UDPG_MGDP_dh_N	PF03721.9	gi|408405219|ref|YP_006863202.1|	-	0.00069	19.0	0.3	0.037	13.4	0.1	2.1	2	0	0	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
FAD_binding_3	PF01494.14	gi|408405219|ref|YP_006863202.1|	-	0.002	17.2	0.6	0.0042	16.2	0.1	1.6	2	0	0	2	2	2	1	FAD	binding	domain
NAD_binding_9	PF13454.1	gi|408405219|ref|YP_006863202.1|	-	0.0022	17.7	2.5	0.11	12.2	0.1	2.2	2	0	0	2	2	2	1	FAD-NAD(P)-binding
GIDA	PF01134.17	gi|408405219|ref|YP_006863202.1|	-	0.0023	16.8	0.4	0.21	10.4	0.1	2.1	2	0	0	2	2	2	2	Glucose	inhibited	division	protein	A
FAD_binding_2	PF00890.19	gi|408405219|ref|YP_006863202.1|	-	0.0061	15.4	1.2	0.0089	14.9	0.3	1.6	2	0	0	2	2	2	1	FAD	binding	domain
NAD_binding_8	PF13450.1	gi|408405219|ref|YP_006863202.1|	-	0.018	15.0	0.4	0.036	14.1	0.3	1.5	1	0	0	1	1	1	0	NAD(P)-binding	Rossmann-like	domain
Thi4	PF01946.12	gi|408405219|ref|YP_006863202.1|	-	0.021	13.9	0.4	0.14	11.2	0.1	1.9	2	0	0	2	2	2	0	Thi4	family
K_oxygenase	PF13434.1	gi|408405219|ref|YP_006863202.1|	-	0.16	10.8	0.2	4.2	6.1	0.0	2.0	2	0	0	2	2	2	0	L-lysine	6-monooxygenase	(NADPH-requiring)
AlaDh_PNT_C	PF01262.16	gi|408405219|ref|YP_006863202.1|	-	0.22	11.1	1.2	0.65	9.5	0.1	2.0	2	0	0	2	2	2	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
Lycopene_cycl	PF05834.7	gi|408405219|ref|YP_006863202.1|	-	0.3	9.9	4.2	3.3	6.5	0.7	2.1	1	1	1	2	2	2	0	Lycopene	cyclase	protein
Ribosomal_L13e	PF01294.13	gi|408405221|ref|YP_006863204.1|	-	1.5e-12	47.3	0.1	1.8e-12	47.1	0.1	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L13e
TruD	PF01142.13	gi|408405222|ref|YP_006863205.1|	-	3.8e-60	203.5	0.0	4.9e-60	203.1	0.0	1.1	1	0	0	1	1	1	1	tRNA	pseudouridine	synthase	D	(TruD)
Cas_Cas4	PF01930.12	gi|408405224|ref|YP_006863207.1|	-	1.6e-06	28.1	0.0	2.4e-06	27.5	0.0	1.3	1	1	0	1	1	1	1	Domain	of	unknown	function	DUF83
LEA_2	PF03168.8	gi|408405225|ref|YP_006863208.1|	-	0.0085	16.4	0.1	0.015	15.6	0.1	1.4	1	0	0	1	1	1	1	Late	embryogenesis	abundant	protein
AA_kinase	PF00696.23	gi|408405228|ref|YP_006863211.1|	-	1.8e-30	106.2	2.9	2.2e-30	105.9	2.0	1.1	1	0	0	1	1	1	1	Amino	acid	kinase	family
CPSase_L_chain	PF00289.17	gi|408405228|ref|YP_006863211.1|	-	0.046	13.8	1.1	0.27	11.3	0.2	2.4	2	1	0	2	2	2	0	Carbamoyl-phosphate	synthase	L	chain,	N-terminal	domain
HD	PF01966.17	gi|408405229|ref|YP_006863212.1|	-	2e-13	50.4	0.4	5.3e-13	49.0	0.3	1.8	1	0	0	1	1	1	1	HD	domain
HDOD	PF08668.7	gi|408405229|ref|YP_006863212.1|	-	0.083	12.1	0.3	0.25	10.5	0.0	1.9	2	0	0	2	2	2	0	HDOD	domain
Thymidylate_kin	PF02223.12	gi|408405230|ref|YP_006863213.1|	-	4.7e-32	110.8	0.0	5.4e-32	110.6	0.0	1.0	1	0	0	1	1	1	1	Thymidylate	kinase
UPF0079	PF02367.12	gi|408405230|ref|YP_006863213.1|	-	0.0017	18.0	0.1	0.0033	17.0	0.0	1.5	1	0	0	1	1	1	1	Uncharacterised	P-loop	hydrolase	UPF0079
AAA_28	PF13521.1	gi|408405230|ref|YP_006863213.1|	-	0.0048	16.8	0.0	0.0064	16.4	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
AAA_17	PF13207.1	gi|408405230|ref|YP_006863213.1|	-	0.0055	17.5	0.0	0.0085	16.9	0.0	1.6	1	1	0	1	1	1	1	AAA	domain
Zeta_toxin	PF06414.7	gi|408405230|ref|YP_006863213.1|	-	0.012	14.6	0.0	0.022	13.8	0.0	1.4	1	0	0	1	1	1	0	Zeta	toxin
DUF374	PF04028.8	gi|408405230|ref|YP_006863213.1|	-	0.024	13.8	0.1	0.56	9.4	0.0	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF374)
AAA_18	PF13238.1	gi|408405230|ref|YP_006863213.1|	-	0.043	14.1	0.1	0.11	12.8	0.0	1.7	1	1	0	2	2	2	0	AAA	domain
CPT	PF07931.7	gi|408405230|ref|YP_006863213.1|	-	0.08	12.5	0.1	0.18	11.4	0.0	1.5	2	0	0	2	2	2	0	Chloramphenicol	phosphotransferase-like	protein
DUF1610	PF07754.6	gi|408405232|ref|YP_006863215.1|	-	0.0013	18.7	5.0	0.0013	18.7	3.4	2.4	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF1610)
Zn_Tnp_IS1595	PF12760.2	gi|408405232|ref|YP_006863215.1|	-	0.012	15.3	18.9	0.02	14.7	9.1	2.1	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
zf-RING_3	PF14369.1	gi|408405232|ref|YP_006863215.1|	-	0.014	15.4	1.8	0.014	15.4	1.2	2.0	2	0	0	2	2	2	0	zinc-finger
DZR	PF12773.2	gi|408405232|ref|YP_006863215.1|	-	0.066	13.0	14.4	1.1	9.0	5.4	2.3	1	1	1	2	2	2	0	Double	zinc	ribbon
Rubredoxin	PF00301.15	gi|408405232|ref|YP_006863215.1|	-	0.12	12.2	16.3	1	9.2	1.0	3.9	1	1	2	3	3	3	0	Rubredoxin
HypA	PF01155.14	gi|408405232|ref|YP_006863215.1|	-	0.12	12.0	10.1	0.098	12.3	3.0	2.1	1	1	1	2	2	2	0	Hydrogenase	expression/synthesis	hypA	family
C1_2	PF03107.11	gi|408405232|ref|YP_006863215.1|	-	0.22	11.6	0.5	0.22	11.6	0.3	2.8	2	1	0	2	2	2	0	C1	domain
OrfB_Zn_ribbon	PF07282.6	gi|408405232|ref|YP_006863215.1|	-	0.22	11.2	14.2	0.22	11.2	1.6	2.7	1	1	2	3	3	3	0	Putative	transposase	DNA-binding	domain
zf-RING_5	PF14634.1	gi|408405232|ref|YP_006863215.1|	-	0.27	10.9	11.3	0.36	10.5	0.8	2.3	2	1	0	2	2	2	0	zinc-RING	finger	domain
zf-C3HC4_3	PF13920.1	gi|408405232|ref|YP_006863215.1|	-	0.29	10.8	11.0	0.13	11.9	1.1	2.1	1	1	1	2	2	2	0	Zinc	finger,	C3HC4	type	(RING	finger)
Desulfoferrod_N	PF06397.7	gi|408405232|ref|YP_006863215.1|	-	0.36	10.2	12.2	0.82	9.1	0.7	3.4	2	1	2	4	4	4	0	Desulfoferrodoxin,	N-terminal	domain
C1_3	PF07649.7	gi|408405232|ref|YP_006863215.1|	-	0.37	10.8	14.1	0.15	12.1	1.3	2.8	2	2	0	2	2	2	0	C1-like	domain
zf-HIT	PF04438.11	gi|408405232|ref|YP_006863215.1|	-	0.46	10.1	20.3	0.11	12.1	4.2	3.0	2	1	0	2	2	2	0	HIT	zinc	finger
zf-MYND	PF01753.13	gi|408405232|ref|YP_006863215.1|	-	0.74	9.7	13.8	0.32	10.9	0.6	2.2	1	1	1	2	2	2	0	MYND	finger
C1_1	PF00130.17	gi|408405232|ref|YP_006863215.1|	-	0.92	9.2	12.2	2e+02	1.8	8.4	2.7	1	1	0	1	1	1	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
zf-UBR	PF02207.15	gi|408405232|ref|YP_006863215.1|	-	0.95	9.2	9.2	6.4	6.5	5.3	2.1	1	1	0	1	1	1	0	Putative	zinc	finger	in	N-recognin	(UBR	box)
zf-B_box	PF00643.19	gi|408405232|ref|YP_006863215.1|	-	0.97	9.3	12.7	0.31	10.9	1.5	2.9	2	1	1	3	3	3	0	B-box	zinc	finger
CcmH	PF03918.9	gi|408405232|ref|YP_006863215.1|	-	1	8.3	3.9	0.14	11.1	0.3	1.4	2	0	0	2	2	2	0	Cytochrome	C	biogenesis	protein
PolC_DP2	PF03833.8	gi|408405232|ref|YP_006863215.1|	-	1.1	6.8	6.7	1.1	6.8	4.7	1.0	1	0	0	1	1	1	0	DNA	polymerase	II	large	subunit	DP2
Elf1	PF05129.8	gi|408405232|ref|YP_006863215.1|	-	1.3	8.7	10.3	0.091	12.4	2.9	1.9	1	1	1	2	2	2	0	Transcription	elongation	factor	Elf1	like
Prok-RING_1	PF14446.1	gi|408405232|ref|YP_006863215.1|	-	1.9	8.2	13.7	7	6.4	4.5	2.9	1	1	1	2	2	2	0	Prokaryotic	RING	finger	family	1
DUF678	PF05077.7	gi|408405232|ref|YP_006863215.1|	-	3.9	7.5	7.6	11	6.0	0.1	2.5	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF678)
DUF2387	PF09526.5	gi|408405232|ref|YP_006863215.1|	-	4.2	7.3	7.3	1	9.2	2.5	1.8	2	0	0	2	2	2	0	Probable	metal-binding	protein	(DUF2387)
zf-H2C2_2	PF13465.1	gi|408405232|ref|YP_006863215.1|	-	6.5	7.2	14.5	20	5.7	3.4	3.5	3	1	0	3	3	3	0	Zinc-finger	double	domain
NOB1_Zn_bind	PF08772.6	gi|408405232|ref|YP_006863215.1|	-	7.4	6.4	12.2	1.8	8.4	3.5	2.2	1	1	1	2	2	2	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
Fer4_4	PF12800.2	gi|408405232|ref|YP_006863215.1|	-	8.4	7.0	15.3	15	6.2	0.1	4.0	4	0	0	4	4	4	0	4Fe-4S	binding	domain
PDGF	PF00341.12	gi|408405232|ref|YP_006863215.1|	-	9	6.4	11.1	16	5.6	7.7	1.5	1	1	0	1	1	1	0	PDGF/VEGF	domain
CpXC	PF14353.1	gi|408405232|ref|YP_006863215.1|	-	9.4	6.2	11.2	18	5.2	0.0	3.2	1	1	2	3	3	3	0	CpXC	protein
Tnp_zf-ribbon_2	PF13842.1	gi|408405232|ref|YP_006863215.1|	-	9.6	6.7	17.1	57	4.2	4.9	2.8	1	1	1	2	2	2	0	DDE_Tnp_1-like	zinc-ribbon
HSP20	PF00011.16	gi|408405233|ref|YP_006863216.1|	-	1e-10	41.3	0.0	1.2e-10	41.1	0.0	1.1	1	0	0	1	1	1	1	Hsp20/alpha	crystallin	family
rve_3	PF13683.1	gi|408405234|ref|YP_006863217.1|	-	0.0019	17.6	0.0	0.003	17.0	0.0	1.3	1	0	0	1	1	1	1	Integrase	core	domain
rve_2	PF13333.1	gi|408405234|ref|YP_006863217.1|	-	0.0032	17.5	0.0	0.0048	16.9	0.0	1.3	1	0	0	1	1	1	1	Integrase	core	domain
HTH_28	PF13518.1	gi|408405235|ref|YP_006863218.1|	-	2.2e-16	59.5	4.0	1.4e-14	53.7	0.4	2.2	2	0	0	2	2	2	2	Helix-turn-helix	domain
HTH_29	PF13551.1	gi|408405235|ref|YP_006863218.1|	-	6.5e-16	58.4	0.3	1e-15	57.8	0.1	1.3	1	1	0	1	1	1	1	Winged	helix-turn	helix
HTH_23	PF13384.1	gi|408405235|ref|YP_006863218.1|	-	1.2e-12	47.0	2.6	1.4e-11	43.6	0.1	2.5	2	1	0	2	2	2	1	Homeodomain-like	domain
LZ_Tnp_IS481	PF13011.1	gi|408405235|ref|YP_006863218.1|	-	4.7e-12	46.0	0.3	1.1e-10	41.6	0.0	2.1	2	0	0	2	2	2	1	leucine-zipper	of	insertion	element	IS481
HTH_32	PF13565.1	gi|408405235|ref|YP_006863218.1|	-	9.1e-11	42.4	1.9	9.5e-11	42.3	0.4	1.7	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_Tnp_1	PF01527.15	gi|408405235|ref|YP_006863218.1|	-	8.5e-09	35.2	0.1	2.4e-08	33.8	0.0	1.8	2	0	0	2	2	2	1	Transposase
HTH_7	PF02796.10	gi|408405235|ref|YP_006863218.1|	-	0.0034	17.1	2.3	0.0074	16.1	0.1	2.5	3	0	0	3	3	3	1	Helix-turn-helix	domain	of	resolvase
HTH_Tnp_IS630	PF01710.11	gi|408405235|ref|YP_006863218.1|	-	0.0036	16.9	2.9	0.0091	15.6	2.0	1.7	1	1	0	1	1	1	1	Transposase
Terminase_5	PF06056.7	gi|408405235|ref|YP_006863218.1|	-	0.0059	16.1	0.0	0.019	14.5	0.0	1.8	2	0	0	2	2	2	1	Putative	ATPase	subunit	of	terminase	(gpP-like)
CENP-B_N	PF04218.8	gi|408405235|ref|YP_006863218.1|	-	0.0069	15.7	0.0	0.015	14.7	0.0	1.5	1	0	0	1	1	1	1	CENP-B	N-terminal	DNA-binding	domain
HTH_AraC	PF00165.18	gi|408405235|ref|YP_006863218.1|	-	0.022	14.5	0.1	0.11	12.3	0.0	2.2	2	0	0	2	2	2	0	Bacterial	regulatory	helix-turn-helix	proteins,	AraC	family
HTH_36	PF13730.1	gi|408405235|ref|YP_006863218.1|	-	0.029	14.4	1.0	0.058	13.5	0.1	1.9	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_psq	PF05225.11	gi|408405235|ref|YP_006863218.1|	-	0.083	12.4	0.1	0.16	11.5	0.1	1.5	1	0	0	1	1	1	0	helix-turn-helix,	Psq	domain
DUF1492	PF07374.6	gi|408405235|ref|YP_006863218.1|	-	0.1	12.6	0.1	0.21	11.7	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1492)
Mor	PF08765.6	gi|408405235|ref|YP_006863218.1|	-	0.14	11.9	0.5	2.2	8.0	0.1	2.3	2	0	0	2	2	2	0	Mor	transcription	activator	family
HTH_21	PF13276.1	gi|408405235|ref|YP_006863218.1|	-	0.19	11.7	4.1	0.16	11.9	0.8	2.1	2	0	0	2	2	2	0	HTH-like	domain
Daxx	PF03344.10	gi|408405236|ref|YP_006863219.1|	-	0.47	8.8	5.7	0.5	8.7	4.0	1.1	1	0	0	1	1	1	0	Daxx	Family
TRAP_alpha	PF03896.11	gi|408405236|ref|YP_006863219.1|	-	1.3	7.9	5.4	0.16	10.9	1.1	1.4	2	0	0	2	2	2	0	Translocon-associated	protein	(TRAP),	alpha	subunit
NOA36	PF06524.7	gi|408405236|ref|YP_006863219.1|	-	2.3	7.4	9.4	3.4	6.8	6.5	1.2	1	0	0	1	1	1	0	NOA36	protein
TTSSLRR	PF12468.3	gi|408405237|ref|YP_006863220.1|	-	0.29	10.7	0.1	0.29	10.7	0.1	1.6	2	0	0	2	2	2	0	Type	III	secretion	system	leucine	rich	repeat	protein
DUF2215	PF10225.4	gi|408405238|ref|YP_006863221.1|	-	0.0046	16.4	0.4	0.0053	16.2	0.3	1.0	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2215)
FtsX	PF02687.16	gi|408405238|ref|YP_006863221.1|	-	0.025	14.3	1.0	0.029	14.1	0.7	1.2	1	0	0	1	1	1	0	FtsX-like	permease	family
TrbC	PF04956.8	gi|408405238|ref|YP_006863221.1|	-	0.06	13.3	0.2	0.078	12.9	0.1	1.2	1	0	0	1	1	1	0	TrbC/VIRB2	family
DUF2177	PF09945.4	gi|408405238|ref|YP_006863221.1|	-	0.086	12.8	1.1	0.096	12.6	0.8	1.1	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2177)
Colicin_V	PF02674.11	gi|408405238|ref|YP_006863221.1|	-	0.11	12.3	1.9	0.11	12.3	1.4	1.1	1	0	0	1	1	1	0	Colicin	V	production	protein
ABC1	PF03109.11	gi|408405239|ref|YP_006863222.1|	-	1.5e-25	89.4	0.0	3.5e-25	88.2	0.0	1.6	1	0	0	1	1	1	1	ABC1	family
APH	PF01636.18	gi|408405239|ref|YP_006863222.1|	-	0.00097	18.9	1.5	0.0069	16.1	0.3	2.3	1	1	1	2	2	2	1	Phosphotransferase	enzyme	family
Pkinase	PF00069.20	gi|408405239|ref|YP_006863222.1|	-	0.0061	15.7	0.0	0.014	14.5	0.0	1.6	1	0	0	1	1	1	1	Protein	kinase	domain
CesT	PF05932.8	gi|408405239|ref|YP_006863222.1|	-	0.062	13.1	0.0	0.15	11.9	0.0	1.6	1	0	0	1	1	1	0	Tir	chaperone	protein	(CesT)	family
Gly-zipper_OmpA	PF13436.1	gi|408405240|ref|YP_006863223.1|	-	0.24	11.0	7.4	0.68	9.5	4.0	2.0	2	0	0	2	2	2	0	Glycine-zipper	containing	OmpA-like	membrane	domain
NUDIX	PF00293.23	gi|408405241|ref|YP_006863224.1|	-	3.3e-16	59.1	0.0	4.1e-16	58.8	0.0	1.1	1	0	0	1	1	1	1	NUDIX	domain
ComA	PF02679.10	gi|408405242|ref|YP_006863225.1|	-	1.3e-53	181.5	0.7	1.7e-53	181.1	0.2	1.3	2	0	0	2	2	2	1	(2R)-phospho-3-sulfolactate	synthase	(ComA)
MarR_2	PF12802.2	gi|408405242|ref|YP_006863225.1|	-	2.6e-05	23.7	0.0	5.1e-05	22.8	0.0	1.5	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.14	gi|408405242|ref|YP_006863225.1|	-	9.6e-05	22.0	0.0	0.0002	20.9	0.0	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR	PF01047.17	gi|408405242|ref|YP_006863225.1|	-	0.023	14.3	0.1	0.049	13.3	0.1	1.5	1	0	0	1	1	1	0	MarR	family
DUF4393	PF14337.1	gi|408405242|ref|YP_006863225.1|	-	0.037	13.4	0.0	0.071	12.5	0.0	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4393)
AP_endonuc_2	PF01261.19	gi|408405242|ref|YP_006863225.1|	-	0.053	12.8	0.0	0.1	11.8	0.0	1.5	2	0	0	2	2	2	0	Xylose	isomerase-like	TIM	barrel
HTH_36	PF13730.1	gi|408405242|ref|YP_006863225.1|	-	0.083	13.0	0.0	0.18	11.9	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_11	PF08279.7	gi|408405242|ref|YP_006863225.1|	-	0.11	12.1	0.0	0.3	10.7	0.0	1.7	1	0	0	1	1	1	0	HTH	domain
HTH_43	PF09904.4	gi|408405242|ref|YP_006863225.1|	-	0.13	12.0	0.0	0.27	11.0	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn	helix
BPD_transp_1	PF00528.17	gi|408405243|ref|YP_006863226.1|	-	7.3e-12	45.1	20.2	7.3e-12	45.1	14.0	1.8	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
ABC_tran	PF00005.22	gi|408405244|ref|YP_006863227.1|	-	8.9e-34	116.7	0.0	1.5e-33	115.9	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|408405244|ref|YP_006863227.1|	-	2e-11	44.4	0.7	1.5e-05	25.1	0.0	2.3	1	1	1	2	2	2	2	AAA	domain
AAA_15	PF13175.1	gi|408405244|ref|YP_006863227.1|	-	5.4e-07	29.0	1.0	0.0012	18.0	0.1	2.1	1	1	1	2	2	2	2	AAA	ATPase	domain
DUF258	PF03193.11	gi|408405244|ref|YP_006863227.1|	-	1.9e-06	27.1	0.0	3.4e-06	26.3	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
SMC_N	PF02463.14	gi|408405244|ref|YP_006863227.1|	-	2.1e-05	23.8	1.1	0.094	11.9	0.1	2.2	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
ABC_ATPase	PF09818.4	gi|408405244|ref|YP_006863227.1|	-	2.1e-05	23.3	0.3	0.0086	14.6	0.0	2.2	2	0	0	2	2	2	2	Predicted	ATPase	of	the	ABC	class
AAA_16	PF13191.1	gi|408405244|ref|YP_006863227.1|	-	7.6e-05	22.7	0.0	0.00018	21.5	0.0	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA	PF00004.24	gi|408405244|ref|YP_006863227.1|	-	0.00032	20.8	0.8	0.0058	16.8	0.6	2.3	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_29	PF13555.1	gi|408405244|ref|YP_006863227.1|	-	0.00034	20.0	0.0	0.00087	18.7	0.0	1.7	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
Arch_ATPase	PF01637.13	gi|408405244|ref|YP_006863227.1|	-	0.0016	18.1	0.0	0.0034	17.1	0.0	1.5	1	1	0	1	1	1	1	Archaeal	ATPase
AAA_23	PF13476.1	gi|408405244|ref|YP_006863227.1|	-	0.0028	17.9	0.1	0.006	16.9	0.1	1.6	1	0	0	1	1	1	1	AAA	domain
AAA_25	PF13481.1	gi|408405244|ref|YP_006863227.1|	-	0.0049	16.3	0.1	0.014	14.8	0.0	1.7	2	0	0	2	2	2	1	AAA	domain
AAA_17	PF13207.1	gi|408405244|ref|YP_006863227.1|	-	0.0057	17.4	0.7	0.0098	16.7	0.5	1.9	1	1	0	1	1	1	1	AAA	domain
MMR_HSR1	PF01926.18	gi|408405244|ref|YP_006863227.1|	-	0.006	16.5	0.1	0.013	15.4	0.1	1.8	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
AAA_22	PF13401.1	gi|408405244|ref|YP_006863227.1|	-	0.0062	16.6	0.3	0.032	14.3	0.0	2.0	2	0	0	2	2	2	1	AAA	domain
AAA_18	PF13238.1	gi|408405244|ref|YP_006863227.1|	-	0.0075	16.5	0.5	0.031	14.6	0.4	2.1	1	1	0	1	1	1	1	AAA	domain
NB-ARC	PF00931.17	gi|408405244|ref|YP_006863227.1|	-	0.0093	14.8	0.0	0.016	14.0	0.0	1.3	1	0	0	1	1	1	1	NB-ARC	domain
Miro	PF08477.8	gi|408405244|ref|YP_006863227.1|	-	0.014	15.9	0.0	0.031	14.7	0.0	1.6	1	0	0	1	1	1	0	Miro-like	protein
AAA_10	PF12846.2	gi|408405244|ref|YP_006863227.1|	-	0.016	14.6	0.0	0.045	13.1	0.0	1.7	1	0	0	1	1	1	0	AAA-like	domain
AAA_14	PF13173.1	gi|408405244|ref|YP_006863227.1|	-	0.016	15.0	0.0	0.036	13.9	0.0	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_19	PF13245.1	gi|408405244|ref|YP_006863227.1|	-	0.018	14.7	0.1	0.076	12.7	0.0	2.0	2	0	0	2	2	2	0	Part	of	AAA	domain
Rad17	PF03215.10	gi|408405244|ref|YP_006863227.1|	-	0.024	13.3	0.0	0.037	12.7	0.0	1.2	1	0	0	1	1	1	0	Rad17	cell	cycle	checkpoint	protein
AAA_33	PF13671.1	gi|408405244|ref|YP_006863227.1|	-	0.027	14.3	0.1	0.25	11.2	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
AAA_28	PF13521.1	gi|408405244|ref|YP_006863227.1|	-	0.034	14.0	0.0	0.073	13.0	0.0	1.6	2	0	0	2	2	2	0	AAA	domain
DUF4152	PF13680.1	gi|408405244|ref|YP_006863227.1|	-	0.041	12.9	0.0	0.083	11.9	0.0	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF4152)
RNA_helicase	PF00910.17	gi|408405244|ref|YP_006863227.1|	-	0.048	13.8	0.0	0.13	12.4	0.0	1.8	1	0	0	1	1	1	0	RNA	helicase
NACHT	PF05729.7	gi|408405244|ref|YP_006863227.1|	-	0.066	12.8	0.0	0.13	11.9	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
MutS_V	PF00488.16	gi|408405244|ref|YP_006863227.1|	-	0.081	12.3	0.3	0.14	11.5	0.0	1.5	2	0	0	2	2	1	0	MutS	domain	V
SbcCD_C	PF13558.1	gi|408405244|ref|YP_006863227.1|	-	0.089	12.7	0.4	0.36	10.7	0.2	2.0	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
MobB	PF03205.9	gi|408405244|ref|YP_006863227.1|	-	0.1	12.3	0.0	0.26	11.0	0.0	1.7	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
NMT1_2	PF13379.1	gi|408405245|ref|YP_006863228.1|	-	3e-33	115.2	0.1	4e-33	114.8	0.1	1.1	1	0	0	1	1	1	1	NMT1-like	family
NMT1	PF09084.6	gi|408405245|ref|YP_006863228.1|	-	1.4e-14	54.2	0.1	1.8e-14	53.8	0.0	1.1	1	0	0	1	1	1	1	NMT1/THI5	like
Phosphonate-bd	PF12974.2	gi|408405245|ref|YP_006863228.1|	-	2.7e-11	43.3	0.0	1.1e-10	41.3	0.0	1.8	1	1	1	2	2	2	2	ABC	transporter,	phosphonate,	periplasmic	substrate-binding	protein
OpuAC	PF04069.7	gi|408405245|ref|YP_006863228.1|	-	3.5e-05	23.2	0.3	8.6e-05	22.0	0.2	1.6	1	1	0	1	1	1	1	Substrate	binding	domain	of	ABC-type	glycine	betaine	transport	system
HHH_5	PF14520.1	gi|408405246|ref|YP_006863229.1|	-	0.057	13.6	0.2	0.083	13.0	0.1	1.2	1	0	0	1	1	1	0	Helix-hairpin-helix	domain
HHH_2	PF12826.2	gi|408405246|ref|YP_006863229.1|	-	0.091	12.6	0.0	0.12	12.2	0.0	1.3	1	0	0	1	1	1	0	Helix-hairpin-helix	motif
TPP_enzyme_N	PF02776.13	gi|408405247|ref|YP_006863230.1|	-	8.9e-49	165.2	0.0	6.6e-48	162.4	0.0	2.1	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
TPP_enzyme_C	PF02775.16	gi|408405247|ref|YP_006863230.1|	-	8.5e-42	142.3	0.1	2.5e-41	140.7	0.0	1.9	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
TPP_enzyme_M	PF00205.17	gi|408405247|ref|YP_006863230.1|	-	9.4e-31	106.3	0.1	2.1e-30	105.2	0.0	1.6	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	central	domain
POR_N	PF01855.14	gi|408405247|ref|YP_006863230.1|	-	1.9e-05	24.2	0.1	4.4e-05	23.0	0.1	1.6	1	0	0	1	1	1	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
DXP_synthase_N	PF13292.1	gi|408405247|ref|YP_006863230.1|	-	7.9e-05	21.7	0.1	0.079	11.8	0.0	2.5	3	0	0	3	3	3	2	1-deoxy-D-xylulose-5-phosphate	synthase
Pterin_4a	PF01329.14	gi|408405248|ref|YP_006863231.1|	-	1.3e-33	114.6	0.1	1.5e-33	114.3	0.1	1.1	1	0	0	1	1	1	1	Pterin	4	alpha	carbinolamine	dehydratase
IF-2	PF11987.3	gi|408405248|ref|YP_006863231.1|	-	0.0031	17.3	0.3	0.01	15.7	0.1	1.8	1	1	1	2	2	2	1	Translation-initiation	factor	2
PLAT	PF01477.18	gi|408405248|ref|YP_006863231.1|	-	0.037	14.3	0.3	0.066	13.5	0.2	1.4	1	1	0	1	1	1	0	PLAT/LH2	domain
A2M_N	PF01835.14	gi|408405249|ref|YP_006863232.1|	-	0.00086	19.5	0.6	0.0039	17.4	0.0	2.4	3	0	0	3	3	3	1	MG2	domain
LrgA	PF03788.9	gi|408405250|ref|YP_006863233.1|	-	0.032	13.9	1.7	0.044	13.4	1.2	1.3	1	1	0	1	1	1	0	LrgA	family
MVIN	PF03023.9	gi|408405250|ref|YP_006863233.1|	-	0.039	12.3	0.7	0.045	12.1	0.5	1.0	1	0	0	1	1	1	0	MviN-like	protein
DUF4328	PF14219.1	gi|408405250|ref|YP_006863233.1|	-	0.044	13.0	1.0	0.051	12.8	0.5	1.3	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4328)
TrbC	PF04956.8	gi|408405250|ref|YP_006863233.1|	-	0.17	11.9	2.5	0.2	11.6	1.8	1.1	1	0	0	1	1	1	0	TrbC/VIRB2	family
Peripla_BP_2	PF01497.13	gi|408405251|ref|YP_006863234.1|	-	0.01	15.0	0.0	0.01	14.9	0.0	1.0	1	0	0	1	1	1	1	Periplasmic	binding	protein
Spc7	PF08317.6	gi|408405251|ref|YP_006863234.1|	-	0.037	12.6	0.3	0.04	12.5	0.2	1.0	1	0	0	1	1	1	0	Spc7	kinetochore	protein
Med9	PF07544.8	gi|408405251|ref|YP_006863234.1|	-	0.065	12.9	0.5	0.083	12.6	0.3	1.1	1	0	0	1	1	1	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
Phage_HK97_TLTM	PF06120.6	gi|408405251|ref|YP_006863234.1|	-	0.13	11.5	0.1	0.13	11.5	0.1	1.0	1	0	0	1	1	1	0	Tail	length	tape	measure	protein
DUF2256	PF10013.4	gi|408405252|ref|YP_006863235.1|	-	0.54	10.0	0.2	0.54	10.0	0.2	1.9	2	1	0	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2256)
MEDS	PF14417.1	gi|408405253|ref|YP_006863236.1|	-	0.0014	17.7	0.0	0.0024	16.9	0.0	1.6	1	1	0	1	1	1	1	MEDS:	MEthanogen/methylotroph,	DcmR	Sensory	domain
DUF2935	PF11155.3	gi|408405253|ref|YP_006863236.1|	-	0.1	12.6	0.0	0.53	10.3	0.0	2.0	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF2935)
Response_reg	PF00072.19	gi|408405254|ref|YP_006863237.1|	-	2.2e-23	82.4	0.1	2.4e-23	82.2	0.1	1.0	1	0	0	1	1	1	1	Response	regulator	receiver	domain
Methyltransf_25	PF13649.1	gi|408405254|ref|YP_006863237.1|	-	0.003	17.8	0.0	0.004	17.4	0.0	1.3	1	1	0	1	1	1	1	Methyltransferase	domain
Peptidase_M20	PF01546.23	gi|408405255|ref|YP_006863238.1|	-	9.6e-30	103.4	0.0	1.4e-29	102.9	0.0	1.3	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.9	gi|408405255|ref|YP_006863238.1|	-	2.9e-14	52.7	0.0	4.9e-14	52.0	0.0	1.3	1	0	0	1	1	1	1	Peptidase	dimerisation	domain
WG_beta_rep	PF14903.1	gi|408405255|ref|YP_006863238.1|	-	0.097	12.9	0.0	0.75	10.1	0.0	2.4	2	0	0	2	2	2	0	WG	containing	repeat
ATP-grasp_5	PF13549.1	gi|408405257|ref|YP_006863240.1|	-	7.3e-84	280.4	0.4	1.7e-83	279.2	0.2	1.7	2	0	0	2	2	2	1	ATP-grasp	domain
Succ_CoA_lig	PF13607.1	gi|408405257|ref|YP_006863240.1|	-	4.3e-55	185.1	1.5	4.3e-55	185.1	1.1	2.0	2	0	0	2	2	2	1	Succinyl-CoA	ligase	like	flavodoxin	domain
CoA_binding_2	PF13380.1	gi|408405257|ref|YP_006863240.1|	-	1.2e-23	83.4	1.0	2.3e-22	79.3	0.1	3.3	3	1	0	3	3	3	1	CoA	binding	domain
CoA_binding	PF02629.14	gi|408405257|ref|YP_006863240.1|	-	1.1e-13	51.5	3.6	2.8e-13	50.1	0.5	2.9	3	0	0	3	3	3	1	CoA	binding	domain
ATP-grasp_4	PF13535.1	gi|408405257|ref|YP_006863240.1|	-	4.7e-06	26.4	0.0	1e-05	25.3	0.0	1.5	1	0	0	1	1	1	1	ATP-grasp	domain
ATP-grasp_2	PF08442.5	gi|408405257|ref|YP_006863240.1|	-	5.3e-06	25.9	0.2	1.1e-05	24.9	0.2	1.6	1	0	0	1	1	1	1	ATP-grasp	domain
CPSase_L_D2	PF02786.12	gi|408405257|ref|YP_006863240.1|	-	0.00063	19.0	0.1	0.0013	18.0	0.1	1.5	1	0	0	1	1	1	1	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
DZR	PF12773.2	gi|408405258|ref|YP_006863241.1|	-	2.7e-06	27.1	7.9	0.00013	21.7	0.4	2.7	2	1	0	2	2	2	2	Double	zinc	ribbon
zf-ribbon_3	PF13248.1	gi|408405258|ref|YP_006863241.1|	-	6.4e-06	25.2	5.1	6.4e-06	25.2	3.5	3.1	3	0	0	3	3	3	1	zinc-ribbon	domain
zinc_ribbon_2	PF13240.1	gi|408405258|ref|YP_006863241.1|	-	0.00011	21.5	4.8	0.00011	21.5	3.3	3.2	3	0	0	3	3	3	1	zinc-ribbon	domain
zf-RanBP	PF00641.13	gi|408405258|ref|YP_006863241.1|	-	0.045	12.8	1.2	0.045	12.8	0.8	2.4	3	0	0	3	3	3	0	Zn-finger	in	Ran	binding	protein	and	others
SprT-like	PF10263.4	gi|408405258|ref|YP_006863241.1|	-	0.054	13.1	0.1	0.096	12.3	0.0	1.4	1	0	0	1	1	1	0	SprT-like	family
PRC	PF05239.11	gi|408405258|ref|YP_006863241.1|	-	0.099	12.5	0.1	0.24	11.2	0.1	1.7	1	1	0	1	1	1	0	PRC-barrel	domain
DUF2199	PF09965.4	gi|408405258|ref|YP_006863241.1|	-	0.11	12.3	1.1	2	8.2	0.2	2.4	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2199)
HypA	PF01155.14	gi|408405258|ref|YP_006863241.1|	-	0.31	10.7	6.0	7.5	6.2	0.8	2.6	2	1	0	2	2	2	0	Hydrogenase	expression/synthesis	hypA	family
FYVE	PF01363.16	gi|408405258|ref|YP_006863241.1|	-	0.34	10.8	3.8	3.1	7.7	0.0	2.5	2	1	0	2	2	2	0	FYVE	zinc	finger
Zn-ribbon_8	PF09723.5	gi|408405258|ref|YP_006863241.1|	-	0.41	10.6	0.1	0.41	10.6	0.1	4.0	3	1	0	3	3	3	0	Zinc	ribbon	domain
GCC2_GCC3	PF07699.8	gi|408405258|ref|YP_006863241.1|	-	0.52	9.9	8.6	0.2	11.2	0.8	3.0	3	0	0	3	3	3	0	GCC2	and	GCC3
DUF3279	PF11682.3	gi|408405258|ref|YP_006863241.1|	-	0.52	9.8	3.8	11	5.6	0.1	3.1	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3279)
DUF678	PF05077.7	gi|408405258|ref|YP_006863241.1|	-	1.5	8.9	4.4	31	4.6	0.0	3.2	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF678)
zf-B_box	PF00643.19	gi|408405258|ref|YP_006863241.1|	-	1.5	8.7	9.6	9.7	6.1	0.3	3.1	3	0	0	3	3	3	0	B-box	zinc	finger
RNA_POL_M_15KD	PF02150.11	gi|408405258|ref|YP_006863241.1|	-	1.7	8.3	13.0	25	4.6	0.0	4.3	4	0	0	4	4	4	0	RNA	polymerases	M/15	Kd	subunit
PHD	PF00628.24	gi|408405258|ref|YP_006863241.1|	-	2.9	7.6	7.3	12	5.7	0.1	3.2	3	0	0	3	3	3	0	PHD-finger
zf-BED	PF02892.10	gi|408405258|ref|YP_006863241.1|	-	3	7.6	6.9	9.7	6.0	0.1	2.8	3	0	0	3	3	3	0	BED	zinc	finger
TFIIS_C	PF01096.13	gi|408405258|ref|YP_006863241.1|	-	3.5	7.3	12.0	1.5	8.4	0.1	4.0	4	0	0	4	4	4	0	Transcription	factor	S-II	(TFIIS)
Tnp_zf-ribbon_2	PF13842.1	gi|408405258|ref|YP_006863241.1|	-	4.2	7.8	7.9	12	6.3	0.1	3.0	3	0	0	3	3	3	0	DDE_Tnp_1-like	zinc-ribbon
GFA	PF04828.9	gi|408405258|ref|YP_006863241.1|	-	5.9	6.9	9.3	8.1	6.4	0.4	3.2	2	2	0	2	2	2	0	Glutathione-dependent	formaldehyde-activating	enzyme
OrfB_Zn_ribbon	PF07282.6	gi|408405258|ref|YP_006863241.1|	-	7.5	6.3	8.1	3.1	7.5	0.7	2.9	3	0	0	3	3	3	0	Putative	transposase	DNA-binding	domain
ABC2_membrane	PF01061.19	gi|408405259|ref|YP_006863242.1|	-	5e-21	74.8	27.0	5e-21	74.8	18.7	1.6	2	0	0	2	2	2	1	ABC-2	type	transporter
ABC2_membrane_3	PF12698.2	gi|408405259|ref|YP_006863242.1|	-	5.5e-12	45.3	40.1	1.1e-11	44.4	21.4	2.0	1	1	1	2	2	2	2	ABC-2	family	transporter	protein
ABC2_membrane_4	PF12730.2	gi|408405259|ref|YP_006863242.1|	-	5.5e-08	32.2	33.6	8.1e-08	31.7	23.3	1.2	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_2	PF12679.2	gi|408405259|ref|YP_006863242.1|	-	6.6e-05	21.9	24.3	9e-05	21.4	16.8	1.1	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_5	PF13346.1	gi|408405259|ref|YP_006863242.1|	-	6.7	5.9	34.3	1.6e+02	1.4	23.7	2.6	1	1	0	1	1	1	0	ABC-2	family	transporter	protein
ABC_tran	PF00005.22	gi|408405260|ref|YP_006863243.1|	-	4.2e-31	108.0	0.0	7.3e-31	107.2	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|408405260|ref|YP_006863243.1|	-	2.2e-12	47.5	0.0	2.9e-07	30.7	0.0	2.3	1	1	0	2	2	2	2	AAA	domain
AAA_15	PF13175.1	gi|408405260|ref|YP_006863243.1|	-	2.4e-05	23.5	0.0	0.0051	15.9	0.0	2.5	2	1	1	3	3	3	2	AAA	ATPase	domain
AAA_23	PF13476.1	gi|408405260|ref|YP_006863243.1|	-	0.0006	20.1	0.4	0.0011	19.3	0.3	1.4	1	1	0	1	1	1	1	AAA	domain
DUF4162	PF13732.1	gi|408405260|ref|YP_006863243.1|	-	0.0008	19.8	0.0	0.0019	18.6	0.0	1.7	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4162)
AAA_29	PF13555.1	gi|408405260|ref|YP_006863243.1|	-	0.0014	18.1	0.1	0.0026	17.2	0.1	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
ACT_4	PF13291.1	gi|408405260|ref|YP_006863243.1|	-	0.022	15.0	0.1	0.055	13.8	0.1	1.6	1	0	0	1	1	1	0	ACT	domain
AAA	PF00004.24	gi|408405260|ref|YP_006863243.1|	-	0.027	14.6	0.6	0.072	13.2	0.1	1.9	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
SRP54	PF00448.17	gi|408405260|ref|YP_006863243.1|	-	0.031	13.7	0.3	0.058	12.8	0.2	1.4	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
SbcCD_C	PF13558.1	gi|408405260|ref|YP_006863243.1|	-	0.075	12.9	0.0	0.14	12.0	0.0	1.4	1	0	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
AAA_30	PF13604.1	gi|408405260|ref|YP_006863243.1|	-	0.12	11.9	0.0	0.23	11.0	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_28	PF13521.1	gi|408405260|ref|YP_006863243.1|	-	0.13	12.2	0.1	0.29	11.0	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
Pyr_redox_2	PF07992.9	gi|408405261|ref|YP_006863244.1|	-	4.9e-36	124.5	3.7	3.7e-35	121.6	2.6	3.0	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.17	gi|408405261|ref|YP_006863244.1|	-	5.6e-25	87.4	0.1	1.1e-24	86.6	0.1	1.5	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
Pyr_redox	PF00070.22	gi|408405261|ref|YP_006863244.1|	-	1e-16	61.0	2.4	2.7e-13	50.1	0.0	3.0	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.1	gi|408405261|ref|YP_006863244.1|	-	2.9e-11	43.8	0.5	2.2e-06	27.8	0.1	3.0	2	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
K_oxygenase	PF13434.1	gi|408405261|ref|YP_006863244.1|	-	2.4e-09	36.5	0.0	8.3e-06	24.9	0.0	2.5	1	1	1	2	2	2	2	L-lysine	6-monooxygenase	(NADPH-requiring)
FAD_binding_2	PF00890.19	gi|408405261|ref|YP_006863244.1|	-	2.9e-05	23.0	3.3	0.0012	17.7	1.0	2.6	2	1	1	3	3	3	1	FAD	binding	domain
HI0933_like	PF03486.9	gi|408405261|ref|YP_006863244.1|	-	0.0013	17.2	1.1	0.13	10.6	0.3	3.0	3	0	0	3	3	3	1	HI0933-like	protein
XdhC_C	PF13478.1	gi|408405261|ref|YP_006863244.1|	-	0.0049	17.1	0.0	0.038	14.3	0.0	2.3	2	0	0	2	2	2	1	XdhC	Rossmann	domain
Thi4	PF01946.12	gi|408405261|ref|YP_006863244.1|	-	0.016	14.3	0.4	0.027	13.5	0.3	1.4	1	0	0	1	1	1	0	Thi4	family
3HCDH_N	PF02737.13	gi|408405261|ref|YP_006863244.1|	-	0.027	14.1	0.8	1.3	8.6	0.0	2.4	2	0	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
DAO	PF01266.19	gi|408405261|ref|YP_006863244.1|	-	0.027	13.3	0.7	0.027	13.3	0.5	2.6	4	0	0	4	4	4	0	FAD	dependent	oxidoreductase
PCMT	PF01135.14	gi|408405261|ref|YP_006863244.1|	-	0.063	12.8	0.1	0.52	9.7	0.0	2.3	3	0	0	3	3	3	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
FAD_oxidored	PF12831.2	gi|408405261|ref|YP_006863244.1|	-	0.25	10.3	1.5	0.86	8.5	0.5	2.0	2	0	0	2	2	2	0	FAD	dependent	oxidoreductase
NAD_binding_8	PF13450.1	gi|408405261|ref|YP_006863244.1|	-	0.31	11.0	4.2	1.8	8.6	0.7	2.6	2	0	0	2	2	2	0	NAD(P)-binding	Rossmann-like	domain
tRNA_anti-codon	PF01336.20	gi|408405262|ref|YP_006863245.1|	-	1e-13	50.8	1.3	0.00086	19.1	0.0	3.6	3	0	0	3	3	3	3	OB-fold	nucleic	acid	binding	domain
tRNA_anti_2	PF13742.1	gi|408405262|ref|YP_006863245.1|	-	0.013	15.3	0.0	11	5.9	0.0	3.3	3	0	0	3	3	3	0	OB-fold	nucleic	acid	binding	domain
MCE	PF02470.15	gi|408405262|ref|YP_006863245.1|	-	0.21	11.6	1.8	2.8	8.0	0.1	2.9	2	0	0	2	2	2	0	mce	related	protein
GCS2	PF04107.8	gi|408405263|ref|YP_006863246.1|	-	5.2e-06	25.7	0.0	1.3e-05	24.4	0.0	1.7	1	1	0	1	1	1	1	Glutamate-cysteine	ligase	family	2(GCS2)
Amidoligase_2	PF12224.3	gi|408405263|ref|YP_006863246.1|	-	0.075	12.6	0.2	1.1	8.8	0.1	2.2	1	1	0	1	1	1	0	Putative	amidoligase	enzyme
DEAD_assoc	PF08494.6	gi|408405264|ref|YP_006863247.1|	-	2.8e-34	118.5	0.0	7.1e-34	117.1	0.0	1.8	1	0	0	1	1	1	1	DEAD/H	associated
DEAD	PF00270.24	gi|408405264|ref|YP_006863247.1|	-	2e-31	108.7	0.8	1.6e-30	105.8	0.2	2.4	2	0	0	2	2	2	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.26	gi|408405264|ref|YP_006863247.1|	-	1.5e-18	66.4	0.3	2.7e-17	62.3	0.0	3.1	3	0	0	3	3	3	1	Helicase	conserved	C-terminal	domain
SNF2_N	PF00176.18	gi|408405264|ref|YP_006863247.1|	-	2.2e-06	26.6	0.3	1e-05	24.5	0.0	2.1	2	0	0	2	2	2	1	SNF2	family	N-terminal	domain
ResIII	PF04851.10	gi|408405264|ref|YP_006863247.1|	-	2.8e-06	27.3	0.0	6.7e-06	26.0	0.0	1.7	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
MRC1	PF09444.5	gi|408405264|ref|YP_006863247.1|	-	0.011	16.0	2.0	3.6	7.9	0.1	2.5	2	0	0	2	2	2	0	MRC1-like	domain
Cas_APE2256	PF09651.5	gi|408405264|ref|YP_006863247.1|	-	0.014	15.1	0.3	1.6	8.4	0.0	3.7	4	0	0	4	4	4	0	CRISPR-associated	protein	(Cas_APE2256)
AAA_16	PF13191.1	gi|408405264|ref|YP_006863247.1|	-	0.07	13.1	0.2	0.24	11.3	0.1	1.9	2	0	0	2	2	2	0	AAA	ATPase	domain
zf-C3HC4_3	PF13920.1	gi|408405264|ref|YP_006863247.1|	-	0.28	10.8	0.8	0.49	10.1	0.5	1.3	1	0	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
UPF0104	PF03706.8	gi|408405266|ref|YP_006863249.1|	-	0.057	12.6	0.0	0.058	12.6	0.0	1.0	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0104)
EphA2_TM	PF14575.1	gi|408405266|ref|YP_006863249.1|	-	0.057	13.8	0.1	0.094	13.1	0.0	1.4	1	0	0	1	1	1	0	Ephrin	type-A	receptor	2	transmembrane	domain
Amnionless	PF14828.1	gi|408405266|ref|YP_006863249.1|	-	0.082	11.3	0.0	0.086	11.3	0.0	1.0	1	0	0	1	1	1	0	Amnionless
Vpu	PF00558.14	gi|408405266|ref|YP_006863249.1|	-	0.24	10.9	2.3	0.45	10.1	1.6	1.5	1	1	0	1	1	1	0	Vpu	protein
PrgI	PF12666.2	gi|408405267|ref|YP_006863250.1|	-	0.083	13.0	0.1	0.18	11.9	0.0	1.5	1	0	0	1	1	1	0	PrgI	family	protein
Ribosomal_L15e	PF00827.12	gi|408405270|ref|YP_006863253.1|	-	2.4e-47	160.9	1.9	3.1e-47	160.5	1.3	1.0	1	0	0	1	1	1	1	Ribosomal	L15
2-Hacid_dh_C	PF02826.14	gi|408405271|ref|YP_006863254.1|	-	6e-66	220.9	0.0	1e-65	220.2	0.0	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
2-Hacid_dh	PF00389.25	gi|408405271|ref|YP_006863254.1|	-	2.3e-29	101.5	0.2	2.6e-29	101.3	0.1	1.0	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	catalytic	domain
NAD_binding_2	PF03446.10	gi|408405271|ref|YP_006863254.1|	-	2.3e-07	30.8	0.2	1.1e-06	28.5	0.0	2.0	2	1	0	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
AdoHcyase_NAD	PF00670.16	gi|408405271|ref|YP_006863254.1|	-	0.0038	17.0	0.2	0.093	12.5	0.0	2.2	2	0	0	2	2	2	1	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
Lyase_1	PF00206.15	gi|408405273|ref|YP_006863256.1|	-	1.6e-93	313.3	0.3	2e-93	313.0	0.2	1.1	1	0	0	1	1	1	1	Lyase
FumaraseC_C	PF10415.4	gi|408405273|ref|YP_006863256.1|	-	1.2e-18	66.9	0.2	3.4e-18	65.4	0.1	1.8	1	0	0	1	1	1	1	Fumarase	C	C-terminus
ADH_N	PF08240.7	gi|408405275|ref|YP_006863258.1|	-	4.1e-35	119.8	0.3	6.6e-35	119.1	0.2	1.3	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.21	gi|408405275|ref|YP_006863258.1|	-	4.7e-27	94.1	0.2	8.9e-27	93.1	0.1	1.4	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_zinc_N_2	PF13602.1	gi|408405275|ref|YP_006863258.1|	-	2.9e-11	44.3	0.0	5.4e-11	43.4	0.0	1.4	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
AlaDh_PNT_C	PF01262.16	gi|408405275|ref|YP_006863258.1|	-	0.011	15.3	0.4	0.019	14.5	0.3	1.3	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
TrkA_N	PF02254.13	gi|408405275|ref|YP_006863258.1|	-	0.012	15.5	0.4	0.025	14.5	0.3	1.5	1	0	0	1	1	1	0	TrkA-N	domain
Integrase_DNA	PF02920.10	gi|408405276|ref|YP_006863259.1|	-	0.14	11.6	0.1	0.21	10.9	0.0	1.3	1	0	0	1	1	1	0	DNA	binding	domain	of	tn916	integrase
4HB_MCP_1	PF12729.2	gi|408405277|ref|YP_006863260.1|	-	0.0088	15.4	1.4	0.014	14.7	0.9	1.3	1	0	0	1	1	1	1	Four	helix	bundle	sensory	module	for	signal	transduction
ToxN_toxin	PF13958.1	gi|408405277|ref|YP_006863260.1|	-	0.056	13.0	0.1	0.085	12.5	0.1	1.3	1	0	0	1	1	1	0	Toxin	ToxN,	type	III	toxin-antitoxin	system
Cytochrom_B562	PF07361.6	gi|408405277|ref|YP_006863260.1|	-	0.27	11.6	2.8	0.73	10.2	0.1	2.1	1	1	1	2	2	2	0	Cytochrome	b562
Aldedh	PF00171.17	gi|408405278|ref|YP_006863261.1|	-	3e-151	503.8	0.2	3.7e-151	503.5	0.2	1.0	1	0	0	1	1	1	1	Aldehyde	dehydrogenase	family
ALAD	PF00490.16	gi|408405279|ref|YP_006863262.1|	-	8.9e-110	366.5	1.7	1.1e-109	366.3	1.2	1.0	1	0	0	1	1	1	1	Delta-aminolevulinic	acid	dehydratase
Glycos_transf_2	PF00535.21	gi|408405280|ref|YP_006863263.1|	-	1.4e-24	86.6	0.0	2.2e-24	86.0	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.1	gi|408405280|ref|YP_006863263.1|	-	2.6e-20	73.1	0.0	6e-20	72.0	0.0	1.6	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_trans_2_3	PF13632.1	gi|408405280|ref|YP_006863263.1|	-	4.2e-08	33.1	0.0	5.4e-08	32.7	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	group	2
Glyco_tranf_2_2	PF10111.4	gi|408405280|ref|YP_006863263.1|	-	9.7e-07	28.1	0.0	1.3e-06	27.6	0.0	1.1	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_4	PF13704.1	gi|408405280|ref|YP_006863263.1|	-	0.004	17.4	0.0	0.049	13.9	0.0	2.2	2	0	0	2	2	2	1	Glycosyl	transferase	family	2
CorA	PF01544.13	gi|408405281|ref|YP_006863264.1|	-	8.1e-62	208.8	1.5	9.3e-62	208.6	1.0	1.0	1	0	0	1	1	1	1	CorA-like	Mg2+	transporter	protein
DUF1474	PF07342.6	gi|408405281|ref|YP_006863264.1|	-	0.0084	16.3	3.1	0.093	12.9	0.1	2.3	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF1474)
EMP24_GP25L	PF01105.19	gi|408405281|ref|YP_006863264.1|	-	0.1	12.3	0.2	0.1	12.3	0.1	1.6	2	0	0	2	2	2	0	emp24/gp25L/p24	family/GOLD
eIF-5a	PF01287.15	gi|408405283|ref|YP_006863266.1|	-	1.2e-11	44.3	1.5	1.7e-11	43.9	1.0	1.2	1	0	0	1	1	1	1	Eukaryotic	elongation	factor	5A	hypusine,	DNA-binding	OB	fold
EFP_N	PF08207.7	gi|408405283|ref|YP_006863266.1|	-	8.5e-09	35.1	0.0	1.5e-07	31.1	0.0	2.2	2	0	0	2	2	2	1	Elongation	factor	P	(EF-P)	KOW-like	domain
EFP	PF01132.15	gi|408405283|ref|YP_006863266.1|	-	0.01	15.4	0.0	0.03	13.9	0.0	1.8	2	0	0	2	2	2	0	Elongation	factor	P	(EF-P)	OB	domain
KOW	PF00467.24	gi|408405283|ref|YP_006863266.1|	-	0.011	15.3	0.8	0.024	14.3	0.0	2.0	2	0	0	2	2	2	0	KOW	motif
BPD_transp_1	PF00528.17	gi|408405284|ref|YP_006863267.1|	-	9.2e-28	97.0	8.9	9.2e-28	97.0	6.2	1.7	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.2	gi|408405284|ref|YP_006863267.1|	-	0.0011	18.2	0.0	0.0045	16.3	0.0	2.0	1	0	0	1	1	1	1	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
BPD_transp_1	PF00528.17	gi|408405285|ref|YP_006863268.1|	-	1.2e-35	122.7	18.1	1.2e-35	122.7	12.5	1.7	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
SBP_bac_5	PF00496.17	gi|408405286|ref|YP_006863269.1|	-	1.8e-20	73.1	0.9	8.2e-19	67.6	0.1	3.1	3	0	0	3	3	3	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
Gmad2	PF10648.4	gi|408405286|ref|YP_006863269.1|	-	0.021	14.9	0.2	0.091	12.9	0.1	2.1	2	0	0	2	2	2	0	Immunoglobulin-like	domain	of	bacterial	spore	germination
NfeD	PF01957.13	gi|408405286|ref|YP_006863269.1|	-	3.1	7.9	9.4	0.73	9.9	3.8	1.8	1	1	1	2	2	2	0	NfeD-like	C-terminal,	partner-binding
ABC_tran	PF00005.22	gi|408405287|ref|YP_006863270.1|	-	2.6e-32	112.0	0.0	3.3e-32	111.6	0.0	1.1	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.7	gi|408405287|ref|YP_006863270.1|	-	1e-07	32.1	0.0	2.1e-07	31.1	0.0	1.5	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.1	gi|408405287|ref|YP_006863270.1|	-	2e-07	31.2	0.0	6.2e-05	23.0	0.0	2.1	1	1	1	2	2	2	1	AAA	domain
AAA_22	PF13401.1	gi|408405287|ref|YP_006863270.1|	-	1.9e-05	24.8	0.1	0.00017	21.7	0.1	2.0	1	1	0	1	1	1	1	AAA	domain
Zeta_toxin	PF06414.7	gi|408405287|ref|YP_006863270.1|	-	0.00036	19.6	0.1	0.00067	18.8	0.1	1.6	1	1	0	1	1	1	1	Zeta	toxin
AAA_16	PF13191.1	gi|408405287|ref|YP_006863270.1|	-	0.0005	20.1	0.0	0.00095	19.1	0.0	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_18	PF13238.1	gi|408405287|ref|YP_006863270.1|	-	0.00071	19.8	0.0	0.0013	19.0	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
UPF0079	PF02367.12	gi|408405287|ref|YP_006863270.1|	-	0.00084	18.9	0.1	0.0014	18.2	0.0	1.3	1	0	0	1	1	1	1	Uncharacterised	P-loop	hydrolase	UPF0079
AAA_17	PF13207.1	gi|408405287|ref|YP_006863270.1|	-	0.0018	19.0	0.2	0.0083	16.9	0.0	2.0	2	1	0	2	2	2	1	AAA	domain
AAA	PF00004.24	gi|408405287|ref|YP_006863270.1|	-	0.0031	17.7	0.0	0.0059	16.8	0.0	1.6	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_29	PF13555.1	gi|408405287|ref|YP_006863270.1|	-	0.0052	16.2	0.1	0.0097	15.4	0.1	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_19	PF13245.1	gi|408405287|ref|YP_006863270.1|	-	0.0063	16.2	0.0	0.014	15.1	0.0	1.6	1	0	0	1	1	1	1	Part	of	AAA	domain
DUF258	PF03193.11	gi|408405287|ref|YP_006863270.1|	-	0.0085	15.2	0.0	0.014	14.6	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
AAA_25	PF13481.1	gi|408405287|ref|YP_006863270.1|	-	0.009	15.4	0.1	0.019	14.3	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
EspG	PF06872.6	gi|408405287|ref|YP_006863270.1|	-	0.0098	14.2	0.0	0.013	13.9	0.0	1.1	1	0	0	1	1	1	1	EspG	protein
Sigma54_activ_2	PF14532.1	gi|408405287|ref|YP_006863270.1|	-	0.015	15.3	0.0	0.03	14.3	0.0	1.5	1	0	0	1	1	1	0	Sigma-54	interaction	domain
GvpD	PF07088.6	gi|408405287|ref|YP_006863270.1|	-	0.017	13.4	0.0	0.024	12.9	0.0	1.2	1	0	0	1	1	1	0	GvpD	gas	vesicle	protein
Sigma54_activat	PF00158.21	gi|408405287|ref|YP_006863270.1|	-	0.017	14.6	0.0	0.03	13.7	0.0	1.4	1	0	0	1	1	1	0	Sigma-54	interaction	domain
AAA_33	PF13671.1	gi|408405287|ref|YP_006863270.1|	-	0.021	14.7	0.1	0.037	13.8	0.1	1.8	1	1	0	1	1	1	0	AAA	domain
AAA_5	PF07728.9	gi|408405287|ref|YP_006863270.1|	-	0.024	14.3	0.0	0.066	12.9	0.0	1.7	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
APS_kinase	PF01583.15	gi|408405287|ref|YP_006863270.1|	-	0.025	14.2	0.0	0.11	12.0	0.0	1.9	2	0	0	2	2	2	0	Adenylylsulphate	kinase
SRP54	PF00448.17	gi|408405287|ref|YP_006863270.1|	-	0.025	14.0	0.0	0.2	11.0	0.0	2.0	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
AAA_13	PF13166.1	gi|408405287|ref|YP_006863270.1|	-	0.032	12.7	0.0	5.3	5.3	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
AAA_15	PF13175.1	gi|408405287|ref|YP_006863270.1|	-	0.039	12.9	0.0	4.6	6.1	0.0	2.1	2	0	0	2	2	2	0	AAA	ATPase	domain
DEAD	PF00270.24	gi|408405287|ref|YP_006863270.1|	-	0.044	13.2	0.1	0.2	11.1	0.1	2.0	1	1	0	1	1	1	0	DEAD/DEAH	box	helicase
AAA_10	PF12846.2	gi|408405287|ref|YP_006863270.1|	-	0.054	12.9	0.1	0.19	11.1	0.0	1.8	1	1	1	2	2	2	0	AAA-like	domain
NACHT	PF05729.7	gi|408405287|ref|YP_006863270.1|	-	0.057	13.0	0.0	0.13	11.9	0.0	1.6	1	0	0	1	1	1	0	NACHT	domain
T2SE	PF00437.15	gi|408405287|ref|YP_006863270.1|	-	0.082	11.7	0.0	0.12	11.2	0.0	1.3	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
AAA_30	PF13604.1	gi|408405287|ref|YP_006863270.1|	-	0.083	12.4	0.1	0.17	11.4	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
PRK	PF00485.13	gi|408405287|ref|YP_006863270.1|	-	0.098	12.2	0.0	0.15	11.5	0.0	1.4	1	0	0	1	1	1	0	Phosphoribulokinase	/	Uridine	kinase	family
DUF927	PF06048.6	gi|408405287|ref|YP_006863270.1|	-	0.098	11.8	0.2	2.9	7.0	0.1	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF927)
MobB	PF03205.9	gi|408405287|ref|YP_006863270.1|	-	0.14	11.9	0.2	0.32	10.7	0.0	1.8	2	0	0	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
RNA_helicase	PF00910.17	gi|408405287|ref|YP_006863270.1|	-	0.14	12.2	0.0	0.25	11.5	0.0	1.4	1	0	0	1	1	1	0	RNA	helicase
ATP_bind_4	PF01902.12	gi|408405288|ref|YP_006863271.1|	-	2.4e-64	216.6	0.0	2.8e-64	216.5	0.0	1.0	1	0	0	1	1	1	1	ATP-binding	region
QueC	PF06508.8	gi|408405288|ref|YP_006863271.1|	-	0.018	14.3	0.0	0.042	13.1	0.0	1.6	1	0	0	1	1	1	0	Queuosine	biosynthesis	protein	QueC
tRNA_Me_trans	PF03054.11	gi|408405288|ref|YP_006863271.1|	-	0.096	11.2	0.0	0.13	10.7	0.0	1.2	1	0	0	1	1	1	0	tRNA	methyl	transferase
SRP54	PF00448.17	gi|408405289|ref|YP_006863272.1|	-	5.7e-72	241.2	1.0	8.6e-72	240.7	0.7	1.3	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
SRP_SPB	PF02978.14	gi|408405289|ref|YP_006863272.1|	-	2.1e-23	82.5	10.4	4.8e-23	81.3	4.1	2.9	3	0	0	3	3	2	1	Signal	peptide	binding	domain
SRP54_N	PF02881.14	gi|408405289|ref|YP_006863272.1|	-	1.8e-16	59.9	2.9	1.4e-15	57.0	0.2	3.0	3	0	0	3	3	3	1	SRP54-type	protein,	helical	bundle	domain
CbiA	PF01656.18	gi|408405289|ref|YP_006863272.1|	-	8.3e-12	44.9	0.3	2.5e-11	43.3	0.2	1.7	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
cobW	PF02492.14	gi|408405289|ref|YP_006863272.1|	-	3.9e-07	29.6	1.4	2.4e-06	27.1	0.9	2.2	1	1	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
MobB	PF03205.9	gi|408405289|ref|YP_006863272.1|	-	5.6e-06	26.1	1.8	7.9e-06	25.6	0.1	2.1	2	0	0	2	2	2	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_22	PF13401.1	gi|408405289|ref|YP_006863272.1|	-	2.2e-05	24.6	0.1	0.0001	22.4	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
ArgK	PF03308.11	gi|408405289|ref|YP_006863272.1|	-	9.6e-05	21.2	0.2	9.6e-05	21.2	0.1	2.4	2	2	0	2	2	2	1	ArgK	protein
6PF2K	PF01591.13	gi|408405289|ref|YP_006863272.1|	-	0.00022	20.3	0.0	0.00065	18.8	0.0	1.8	2	0	0	2	2	1	1	6-phosphofructo-2-kinase
AAA	PF00004.24	gi|408405289|ref|YP_006863272.1|	-	0.00031	20.9	0.0	0.0037	17.4	0.0	2.7	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
PduV-EutP	PF10662.4	gi|408405289|ref|YP_006863272.1|	-	0.00032	20.2	0.6	0.2	11.1	0.0	2.6	2	0	0	2	2	2	1	Ethanolamine	utilisation	-	propanediol	utilisation
APS_kinase	PF01583.15	gi|408405289|ref|YP_006863272.1|	-	0.00054	19.6	0.0	0.0013	18.4	0.0	1.7	1	0	0	1	1	1	1	Adenylylsulphate	kinase
MipZ	PF09140.6	gi|408405289|ref|YP_006863272.1|	-	0.00055	19.0	0.7	0.032	13.3	0.5	2.4	1	1	0	1	1	1	1	ATPase	MipZ
AAA_33	PF13671.1	gi|408405289|ref|YP_006863272.1|	-	0.00077	19.3	0.0	0.0014	18.4	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.1	gi|408405289|ref|YP_006863272.1|	-	0.0017	18.3	0.0	0.0041	17.1	0.0	1.8	1	1	0	1	1	1	1	AAA	ATPase	domain
KTI12	PF08433.5	gi|408405289|ref|YP_006863272.1|	-	0.0023	17.2	0.0	0.0058	15.8	0.0	1.7	2	0	0	2	2	1	1	Chromatin	associated	protein	KTI12
AAA_17	PF13207.1	gi|408405289|ref|YP_006863272.1|	-	0.0025	18.6	0.0	0.0084	16.9	0.0	2.0	1	0	0	1	1	1	1	AAA	domain
AAA_10	PF12846.2	gi|408405289|ref|YP_006863272.1|	-	0.0027	17.2	0.1	0.0041	16.5	0.1	1.5	1	1	0	1	1	1	1	AAA-like	domain
Thymidylate_kin	PF02223.12	gi|408405289|ref|YP_006863272.1|	-	0.0037	16.6	0.2	0.013	14.9	0.1	1.9	2	0	0	2	2	1	1	Thymidylate	kinase
LpxK	PF02606.9	gi|408405289|ref|YP_006863272.1|	-	0.0091	14.9	0.4	0.021	13.8	0.3	1.5	1	0	0	1	1	1	1	Tetraacyldisaccharide-1-P	4'-kinase
AAA_30	PF13604.1	gi|408405289|ref|YP_006863272.1|	-	0.01	15.4	1.0	0.024	14.2	0.0	2.2	3	0	0	3	3	1	1	AAA	domain
VirC1	PF07015.6	gi|408405289|ref|YP_006863272.1|	-	0.01	14.9	0.0	0.02	14.0	0.0	1.4	1	0	0	1	1	1	0	VirC1	protein
Mur_ligase_M	PF08245.7	gi|408405289|ref|YP_006863272.1|	-	0.013	15.5	0.0	0.026	14.5	0.0	1.6	1	0	0	1	1	1	0	Mur	ligase	middle	domain
SRPRB	PF09439.5	gi|408405289|ref|YP_006863272.1|	-	0.015	14.5	0.4	0.7	9.0	0.0	2.3	2	0	0	2	2	2	0	Signal	recognition	particle	receptor	beta	subunit
AAA_25	PF13481.1	gi|408405289|ref|YP_006863272.1|	-	0.022	14.1	1.1	0.072	12.4	0.8	1.9	1	1	0	1	1	1	0	AAA	domain
ArsA_ATPase	PF02374.10	gi|408405289|ref|YP_006863272.1|	-	0.022	13.7	4.8	0.099	11.6	0.1	3.1	3	0	0	3	3	3	0	Anion-transporting	ATPase
Zeta_toxin	PF06414.7	gi|408405289|ref|YP_006863272.1|	-	0.028	13.5	0.0	0.048	12.7	0.0	1.4	1	0	0	1	1	1	0	Zeta	toxin
ATP_bind_1	PF03029.12	gi|408405289|ref|YP_006863272.1|	-	0.038	13.5	0.0	0.09	12.3	0.0	1.8	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
RNA_helicase	PF00910.17	gi|408405289|ref|YP_006863272.1|	-	0.043	14.0	0.0	0.15	12.2	0.0	1.9	1	1	0	1	1	1	0	RNA	helicase
AAA_18	PF13238.1	gi|408405289|ref|YP_006863272.1|	-	0.053	13.8	0.2	0.053	13.8	0.2	2.7	3	1	0	3	3	2	0	AAA	domain
LytR_C	PF13399.1	gi|408405289|ref|YP_006863272.1|	-	0.067	13.5	0.0	0.22	11.8	0.0	1.9	1	0	0	1	1	1	0	LytR	cell	envelope-related	transcriptional	attenuator
AAA_31	PF13614.1	gi|408405289|ref|YP_006863272.1|	-	0.092	12.6	0.0	9	6.2	0.0	2.5	2	0	0	2	2	2	0	AAA	domain
AAA_26	PF13500.1	gi|408405289|ref|YP_006863272.1|	-	0.097	12.2	0.3	0.74	9.3	0.1	2.0	1	1	0	2	2	2	0	AAA	domain
Radical_SAM_N	PF08497.5	gi|408405289|ref|YP_006863272.1|	-	0.1	11.5	0.4	0.47	9.3	0.0	2.2	2	1	1	3	3	3	0	Radical	SAM	N-terminal
NTPase_1	PF03266.10	gi|408405289|ref|YP_006863272.1|	-	0.16	11.6	0.1	0.16	11.6	0.1	2.8	2	1	1	3	3	3	0	NTPase
THUMP	PF02926.12	gi|408405290|ref|YP_006863273.1|	-	2.5e-05	24.1	0.3	0.00038	20.3	0.0	2.2	2	0	0	2	2	2	1	THUMP	domain
DUF3633	PF12315.3	gi|408405291|ref|YP_006863274.1|	-	0.024	13.9	0.2	0.037	13.3	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3633)
NTP_transf_2	PF01909.18	gi|408405292|ref|YP_006863275.1|	-	6.4e-07	29.6	0.4	2.2e-06	27.8	0.3	2.0	1	1	0	1	1	1	1	Nucleotidyltransferase	domain
Ribosomal_S27	PF01599.14	gi|408405293|ref|YP_006863276.1|	-	6.1e-21	73.9	4.5	8e-21	73.6	3.1	1.2	1	0	0	1	1	1	1	Ribosomal	protein	S27a
GCC2_GCC3	PF07699.8	gi|408405293|ref|YP_006863276.1|	-	2.2e-05	23.9	3.0	2.7e-05	23.6	2.1	1.2	1	0	0	1	1	1	1	GCC2	and	GCC3
OrfB_Zn_ribbon	PF07282.6	gi|408405293|ref|YP_006863276.1|	-	0.0013	18.3	1.5	0.0017	18.0	1.1	1.2	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
Ribosomal_L37e	PF01907.14	gi|408405293|ref|YP_006863276.1|	-	0.0022	17.7	5.1	0.0028	17.4	3.5	1.3	1	0	0	1	1	1	1	Ribosomal	protein	L37e
IBR	PF01485.16	gi|408405293|ref|YP_006863276.1|	-	0.0048	16.7	0.5	0.0057	16.5	0.3	1.2	1	0	0	1	1	1	1	IBR	domain
DUF2082	PF09855.4	gi|408405293|ref|YP_006863276.1|	-	0.0054	16.5	3.4	0.097	12.5	0.3	2.3	1	1	1	2	2	2	1	Nucleic-acid-binding	protein	containing	Zn-ribbon	domain	(DUF2082)
DZR	PF12773.2	gi|408405293|ref|YP_006863276.1|	-	0.0061	16.3	1.6	0.008	15.9	1.1	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-Mss51	PF13824.1	gi|408405293|ref|YP_006863276.1|	-	0.014	15.2	1.3	0.48	10.3	0.9	2.1	1	1	0	1	1	1	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
NCD3G	PF07562.9	gi|408405293|ref|YP_006863276.1|	-	0.015	14.9	0.6	0.024	14.3	0.4	1.3	1	0	0	1	1	1	0	Nine	Cysteines	Domain	of	family	3	GPCR
GFA	PF04828.9	gi|408405293|ref|YP_006863276.1|	-	0.016	15.1	3.0	0.17	11.8	0.1	2.0	1	1	1	2	2	2	0	Glutathione-dependent	formaldehyde-activating	enzyme
Zn_Tnp_IS1595	PF12760.2	gi|408405293|ref|YP_006863276.1|	-	0.027	14.2	4.4	0.051	13.3	2.9	1.6	1	1	0	1	1	1	0	Transposase	zinc-ribbon	domain
DUF1451	PF07295.6	gi|408405293|ref|YP_006863276.1|	-	0.03	14.1	1.0	0.032	13.9	0.7	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1451)
zf-CCHC_5	PF14787.1	gi|408405293|ref|YP_006863276.1|	-	0.036	13.5	0.7	0.036	13.5	0.5	2.1	2	0	0	2	2	2	0	GAG-polyprotein	viral	zinc-finger
zinc_ribbon_2	PF13240.1	gi|408405293|ref|YP_006863276.1|	-	0.042	13.3	2.5	1.5	8.3	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-C2H2_4	PF13894.1	gi|408405293|ref|YP_006863276.1|	-	0.069	13.5	2.6	5.4	7.5	0.3	2.3	2	0	0	2	2	2	0	C2H2-type	zinc	finger
HypA	PF01155.14	gi|408405293|ref|YP_006863276.1|	-	0.092	12.4	1.1	0.12	12.0	0.7	1.2	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
DNA_RNApol_7kD	PF03604.8	gi|408405293|ref|YP_006863276.1|	-	0.13	11.7	1.6	0.26	10.8	1.1	1.5	1	0	0	1	1	1	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
A2L_zn_ribbon	PF08792.5	gi|408405293|ref|YP_006863276.1|	-	0.17	11.3	2.4	0.98	8.9	1.6	2.0	1	1	0	1	1	1	0	A2L	zinc	ribbon	domain
Nudix_N_2	PF14803.1	gi|408405293|ref|YP_006863276.1|	-	0.19	11.4	7.5	1.7	8.3	3.0	2.2	1	1	1	2	2	2	0	Nudix	N-terminal
DUF2387	PF09526.5	gi|408405293|ref|YP_006863276.1|	-	0.2	11.6	1.6	0.43	10.5	1.1	1.6	1	1	0	1	1	1	0	Probable	metal-binding	protein	(DUF2387)
Lar_restr_allev	PF14354.1	gi|408405293|ref|YP_006863276.1|	-	0.21	11.9	3.0	0.31	11.3	2.0	1.5	1	1	0	1	1	1	0	Restriction	alleviation	protein	Lar
TF_Zn_Ribbon	PF08271.7	gi|408405293|ref|YP_006863276.1|	-	0.31	10.3	3.6	0.54	9.6	2.5	1.4	1	1	0	1	1	1	0	TFIIB	zinc-binding
zf-NADH-PPase	PF09297.6	gi|408405293|ref|YP_006863276.1|	-	0.34	10.4	0.3	0.34	10.4	0.2	2.4	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
TFIIS_C	PF01096.13	gi|408405293|ref|YP_006863276.1|	-	0.38	10.4	2.6	12	5.6	0.2	2.2	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
DUF1610	PF07754.6	gi|408405293|ref|YP_006863276.1|	-	0.53	10.4	5.5	4.1	7.6	0.2	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1610)
FeS	PF04060.8	gi|408405293|ref|YP_006863276.1|	-	0.55	9.8	3.3	0.91	9.1	0.4	2.3	2	0	0	2	2	2	0	Putative	Fe-S	cluster
zf-ribbon_3	PF13248.1	gi|408405293|ref|YP_006863276.1|	-	0.69	9.2	6.5	18	4.7	4.6	2.2	1	1	1	2	2	2	0	zinc-ribbon	domain
Zn-ribbon_8	PF09723.5	gi|408405293|ref|YP_006863276.1|	-	0.84	9.6	6.4	4	7.4	0.5	2.3	1	1	0	2	2	2	0	Zinc	ribbon	domain
zf-C2H2	PF00096.21	gi|408405293|ref|YP_006863276.1|	-	0.98	9.8	5.3	3.2	8.2	0.6	2.3	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
zf-ISL3	PF14690.1	gi|408405293|ref|YP_006863276.1|	-	1.1	9.2	7.2	3.4	7.7	0.5	2.4	1	1	1	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
zinc_ribbon_5	PF13719.1	gi|408405293|ref|YP_006863276.1|	-	3.7	7.2	6.0	17	5.0	0.0	2.8	3	1	0	3	3	2	0	zinc-ribbon	domain
ADK_lid	PF05191.9	gi|408405293|ref|YP_006863276.1|	-	3.8	7.2	9.0	2.9	7.6	0.3	2.3	2	0	0	2	2	2	0	Adenylate	kinase,	active	site	lid
zinc_ribbon_4	PF13717.1	gi|408405293|ref|YP_006863276.1|	-	5.4	6.7	6.2	21	4.9	0.0	2.8	3	1	0	3	3	2	0	zinc-ribbon	domain
Ribosomal_S24e	PF01282.14	gi|408405294|ref|YP_006863277.1|	-	2.7e-09	36.6	0.5	4.1e-09	36.0	0.3	1.4	1	1	0	1	1	1	1	Ribosomal	protein	S24e
Spore_GerQ	PF09671.5	gi|408405296|ref|YP_006863279.1|	-	0.029	14.0	0.0	0.034	13.7	0.0	1.3	1	0	0	1	1	1	0	Spore	coat	protein	(Spore_GerQ)
DUF1699	PF08004.6	gi|408405296|ref|YP_006863279.1|	-	0.098	12.1	0.0	0.13	11.7	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1699)
AAA	PF00004.24	gi|408405297|ref|YP_006863280.1|	-	0.00074	19.7	0.0	0.0008	19.6	0.0	1.1	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
UbiD	PF01977.11	gi|408405300|ref|YP_006863283.1|	-	1.7e-156	520.8	0.6	1.9e-156	520.6	0.4	1.0	1	0	0	1	1	1	1	3-octaprenyl-4-hydroxybenzoate	carboxy-lyase
Radical_SAM	PF04055.16	gi|408405301|ref|YP_006863284.1|	-	1.8e-16	60.7	0.1	3.3e-16	59.9	0.1	1.5	2	0	0	2	2	2	1	Radical	SAM	superfamily
BATS	PF06968.8	gi|408405301|ref|YP_006863284.1|	-	0.11	12.3	0.0	4.2	7.2	0.0	3.1	3	1	0	3	3	3	0	Biotin	and	Thiamin	Synthesis	associated	domain
Radical_SAM	PF04055.16	gi|408405302|ref|YP_006863285.1|	-	3.5e-13	50.0	0.1	7.3e-13	49.0	0.0	1.6	1	0	0	1	1	1	1	Radical	SAM	superfamily
Hemagglutinin	PF00509.13	gi|408405304|ref|YP_006863287.1|	-	0.0046	15.1	0.0	0.0054	14.9	0.0	1.0	1	0	0	1	1	1	1	Haemagglutinin
DUF3702	PF12486.3	gi|408405304|ref|YP_006863287.1|	-	0.048	13.3	0.0	0.062	12.9	0.0	1.1	1	0	0	1	1	1	0	ImpA	domain	protein
Sugarporin_N	PF11471.3	gi|408405304|ref|YP_006863287.1|	-	0.098	12.3	0.0	0.15	11.7	0.0	1.2	1	0	0	1	1	1	0	Maltoporin	periplasmic	N-terminal	extension
Cortex-I_coil	PF09304.5	gi|408405304|ref|YP_006863287.1|	-	0.1	12.6	0.0	0.14	12.2	0.0	1.2	1	0	0	1	1	1	0	Cortexillin	I,	coiled	coil
Trypsin_2	PF13365.1	gi|408405305|ref|YP_006863288.1|	-	1.6e-22	79.7	1.0	1.6e-22	79.7	0.7	1.7	2	0	0	2	2	2	1	Trypsin-like	peptidase	domain
Trypsin	PF00089.21	gi|408405305|ref|YP_006863288.1|	-	1.9e-15	57.0	0.3	5e-15	55.6	0.2	1.6	1	1	0	1	1	1	1	Trypsin
PDZ_2	PF13180.1	gi|408405305|ref|YP_006863288.1|	-	1.6e-13	50.3	0.0	5.3e-13	48.6	0.0	2.0	1	0	0	1	1	1	1	PDZ	domain
Peptidase_S29	PF02907.10	gi|408405305|ref|YP_006863288.1|	-	0.005	16.3	0.1	0.014	14.9	0.0	1.7	1	0	0	1	1	1	1	Hepatitis	C	virus	NS3	protease
PDZ	PF00595.19	gi|408405305|ref|YP_006863288.1|	-	0.013	15.6	0.2	0.63	10.2	0.1	3.2	2	1	0	2	2	2	0	PDZ	domain	(Also	known	as	DHR	or	GLGF)
S1_2	PF13509.1	gi|408405305|ref|YP_006863288.1|	-	0.11	12.4	0.1	0.27	11.1	0.1	1.7	1	0	0	1	1	1	0	S1	domain
Peptidase_S46	PF10459.4	gi|408405305|ref|YP_006863288.1|	-	0.17	10.2	0.6	0.29	9.5	0.4	1.3	1	0	0	1	1	1	0	Peptidase	S46
VitK2_biosynth	PF02621.9	gi|408405306|ref|YP_006863289.1|	-	2e-67	227.0	0.0	2.3e-67	226.8	0.0	1.0	1	0	0	1	1	1	1	Menaquinone	biosynthesis
SBP_bac_3	PF00497.15	gi|408405306|ref|YP_006863289.1|	-	0.059	12.6	0.0	0.11	11.7	0.0	1.3	1	0	0	1	1	1	0	Bacterial	extracellular	solute-binding	proteins,	family	3
GTP_EFTU	PF00009.22	gi|408405307|ref|YP_006863290.1|	-	6.6e-52	175.6	0.1	1.1e-51	174.9	0.0	1.3	1	0	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
EFG_IV	PF03764.13	gi|408405307|ref|YP_006863290.1|	-	3.6e-25	87.8	0.0	1.6e-24	85.7	0.0	2.1	2	0	0	2	2	2	1	Elongation	factor	G,	domain	IV
EFG_C	PF00679.19	gi|408405307|ref|YP_006863290.1|	-	4.1e-20	71.4	0.0	9.9e-20	70.2	0.0	1.7	1	0	0	1	1	1	1	Elongation	factor	G	C-terminus
EFG_II	PF14492.1	gi|408405307|ref|YP_006863290.1|	-	3.5e-19	68.4	0.4	6.5e-19	67.5	0.3	1.5	1	0	0	1	1	1	1	Elongation	Factor	G,	domain	II
GTP_EFTU_D2	PF03144.20	gi|408405307|ref|YP_006863290.1|	-	7e-13	48.4	0.1	2.3e-12	46.8	0.0	2.0	1	0	0	1	1	1	1	Elongation	factor	Tu	domain	2
Polyketide_cyc2	PF10604.4	gi|408405311|ref|YP_006863294.1|	-	1.3e-13	51.3	0.0	1.4e-13	51.2	0.0	1.0	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
Polyketide_cyc	PF03364.15	gi|408405311|ref|YP_006863294.1|	-	5.6e-11	42.5	0.0	6.8e-11	42.2	0.0	1.0	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
AHSA1	PF08327.6	gi|408405311|ref|YP_006863294.1|	-	0.0064	16.5	0.0	0.011	15.7	0.0	1.5	1	1	0	1	1	1	1	Activator	of	Hsp90	ATPase	homolog	1-like	protein
COXG	PF06240.8	gi|408405311|ref|YP_006863294.1|	-	0.037	13.7	0.0	0.12	12.0	0.0	1.8	1	1	0	1	1	1	0	Carbon	monoxide	dehydrogenase	subunit	G	(CoxG)
Osmo_MPGsynth	PF09488.5	gi|408405314|ref|YP_006863297.1|	-	1.3e-167	557.3	0.0	1.5e-167	557.1	0.0	1.0	1	0	0	1	1	1	1	Mannosyl-3-phosphoglycerate	synthase	(osmo_MPGsynth)
Glycos_transf_2	PF00535.21	gi|408405314|ref|YP_006863297.1|	-	0.12	12.1	0.0	0.29	10.8	0.0	1.7	1	0	0	1	1	1	0	Glycosyl	transferase	family	2
HAD	PF12710.2	gi|408405315|ref|YP_006863298.1|	-	6e-14	52.6	0.1	7.8e-14	52.2	0.1	1.2	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.21	gi|408405315|ref|YP_006863298.1|	-	1e-09	39.1	0.1	4.9e-07	30.3	0.0	2.1	1	1	1	2	2	2	2	haloacid	dehalogenase-like	hydrolase
Hydrolase_3	PF08282.7	gi|408405315|ref|YP_006863298.1|	-	4.6e-09	36.2	0.1	3.3e-07	30.1	0.0	2.3	2	1	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
Put_Phosphatase	PF06888.7	gi|408405315|ref|YP_006863298.1|	-	1.3e-05	24.4	0.1	4.3e-05	22.7	0.0	1.8	1	1	0	1	1	1	1	Putative	Phosphatase
HAD_2	PF13419.1	gi|408405315|ref|YP_006863298.1|	-	1.7e-05	25.0	0.1	0.012	15.8	0.0	2.2	2	0	0	2	2	2	2	Haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.1	gi|408405315|ref|YP_006863298.1|	-	0.0066	16.1	0.0	0.019	14.6	0.0	1.7	2	0	0	2	2	2	1	HAD-hyrolase-like
S6PP	PF05116.8	gi|408405315|ref|YP_006863298.1|	-	0.058	12.6	0.0	0.093	12.0	0.0	1.3	1	0	0	1	1	1	0	Sucrose-6F-phosphate	phosphohydrolase
DHFR_2	PF06442.6	gi|408405315|ref|YP_006863298.1|	-	0.062	12.9	0.0	11	5.7	0.0	2.7	3	0	0	3	3	3	0	R67	dihydrofolate	reductase
Asn_synthase	PF00733.16	gi|408405316|ref|YP_006863299.1|	-	7.1e-54	182.9	0.3	1.2e-53	182.2	0.2	1.3	1	0	0	1	1	1	1	Asparagine	synthase
GATase_7	PF13537.1	gi|408405316|ref|YP_006863299.1|	-	2.2e-34	117.9	0.0	5.3e-34	116.6	0.0	1.7	2	0	0	2	2	2	1	Glutamine	amidotransferase	domain
GATase_6	PF13522.1	gi|408405316|ref|YP_006863299.1|	-	3.4e-33	114.4	0.0	7.8e-33	113.2	0.0	1.7	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
GATase_2	PF00310.16	gi|408405316|ref|YP_006863299.1|	-	2.2e-12	46.3	0.4	4.7e-09	35.4	0.0	2.9	1	1	1	2	2	2	2	Glutamine	amidotransferases	class-II
NAD_synthase	PF02540.12	gi|408405316|ref|YP_006863299.1|	-	8.4e-05	21.5	0.0	0.00032	19.7	0.0	1.8	2	0	0	2	2	2	1	NAD	synthase
GATase_4	PF13230.1	gi|408405316|ref|YP_006863299.1|	-	0.00017	20.3	0.0	0.00028	19.6	0.0	1.2	1	0	0	1	1	1	1	Glutamine	amidotransferases	class-II
QueC	PF06508.8	gi|408405316|ref|YP_006863299.1|	-	0.002	17.4	0.0	0.0051	16.1	0.0	1.7	1	0	0	1	1	1	1	Queuosine	biosynthesis	protein	QueC
PAPS_reduct	PF01507.14	gi|408405316|ref|YP_006863299.1|	-	0.0028	17.5	0.0	0.0063	16.3	0.0	1.6	1	0	0	1	1	1	1	Phosphoadenosine	phosphosulfate	reductase	family
tRNA_Me_trans	PF03054.11	gi|408405316|ref|YP_006863299.1|	-	0.029	12.9	0.1	0.075	11.5	0.1	1.7	1	1	0	1	1	1	0	tRNA	methyl	transferase
DUF188	PF02639.9	gi|408405316|ref|YP_006863299.1|	-	0.089	12.2	0.0	0.21	11.0	0.0	1.6	1	0	0	1	1	1	0	Uncharacterized	BCR,	YaiI/YqxD	family	COG1671
MerT	PF02411.10	gi|408405317|ref|YP_006863300.1|	-	4.7	7.0	14.4	0.063	13.0	3.1	2.9	1	1	1	3	3	3	0	MerT	mercuric	transport	protein
DNase-RNase	PF02577.9	gi|408405318|ref|YP_006863301.1|	-	1.2e-08	34.2	0.0	1.5e-08	33.9	0.0	1.1	1	0	0	1	1	1	1	Bifunctional	nuclease
DUF3463	PF11946.3	gi|408405319|ref|YP_006863302.1|	-	0.0016	18.0	0.4	0.0021	17.6	0.3	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF3463)
SPASM	PF13186.1	gi|408405319|ref|YP_006863302.1|	-	0.0094	16.2	0.2	0.016	15.5	0.1	1.3	1	0	0	1	1	1	1	Iron-sulfur	cluster-binding	domain
Radical_SAM	PF04055.16	gi|408405320|ref|YP_006863303.1|	-	6.2e-06	26.4	0.0	7.1e-06	26.2	0.0	1.0	1	0	0	1	1	1	1	Radical	SAM	superfamily
Fer4_14	PF13394.1	gi|408405320|ref|YP_006863303.1|	-	0.0026	17.7	0.0	0.003	17.5	0.0	1.1	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Radical_SAM	PF04055.16	gi|408405322|ref|YP_006863305.1|	-	6.5e-14	52.4	0.0	1.2e-13	51.6	0.0	1.4	1	0	0	1	1	1	1	Radical	SAM	superfamily
B12-binding	PF02310.14	gi|408405322|ref|YP_006863305.1|	-	0.021	14.6	0.0	0.057	13.2	0.0	1.8	1	0	0	1	1	1	0	B12	binding	domain
DUF2636	PF11120.3	gi|408405323|ref|YP_006863306.1|	-	0.0044	16.4	0.0	0.0046	16.4	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2636)
Zn_Tnp_IS1595	PF12760.2	gi|408405323|ref|YP_006863306.1|	-	0.043	13.6	0.3	0.055	13.2	0.2	1.2	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
zf-FPG_IleRS	PF06827.9	gi|408405323|ref|YP_006863306.1|	-	0.047	13.3	0.9	0.077	12.6	0.7	1.4	1	0	0	1	1	1	0	Zinc	finger	found	in	FPG	and	IleRS
zf-H2C2_2	PF13465.1	gi|408405323|ref|YP_006863306.1|	-	0.062	13.6	0.6	0.092	13.0	0.4	1.3	1	0	0	1	1	1	0	Zinc-finger	double	domain
NinF	PF05810.7	gi|408405323|ref|YP_006863306.1|	-	0.12	12.1	0.1	0.15	11.8	0.1	1.2	1	0	0	1	1	1	0	NinF	protein
zf-Dof	PF02701.10	gi|408405323|ref|YP_006863306.1|	-	0.41	10.5	1.9	0.45	10.4	0.9	1.5	1	1	0	1	1	1	0	Dof	domain,	zinc	finger
Copper-bind	PF00127.15	gi|408405324|ref|YP_006863307.1|	-	6.9e-06	26.2	0.0	1.2e-05	25.4	0.0	1.4	1	0	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
Cupredoxin_1	PF13473.1	gi|408405324|ref|YP_006863307.1|	-	0.00046	20.0	0.0	0.00066	19.5	0.0	1.3	1	0	0	1	1	1	1	Cupredoxin-like	domain
CS	PF04969.11	gi|408405324|ref|YP_006863307.1|	-	0.042	14.4	0.1	0.07	13.6	0.0	1.3	1	0	0	1	1	1	0	CS	domain
FeoB_C	PF07664.7	gi|408405324|ref|YP_006863307.1|	-	0.13	11.6	0.3	0.2	11.0	0.2	1.3	1	0	0	1	1	1	0	Ferrous	iron	transport	protein	B	C	terminus
PepSY	PF03413.14	gi|408405326|ref|YP_006863309.1|	-	4.2e-06	27.3	0.0	6.6e-06	26.6	0.0	1.3	1	0	0	1	1	1	1	Peptidase	propeptide	and	YPEB	domain
DDE_5	PF13546.1	gi|408405326|ref|YP_006863309.1|	-	0.0091	14.8	0.0	0.01	14.6	0.0	1.1	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
EBV-NA3	PF05009.7	gi|408405327|ref|YP_006863310.1|	-	0.038	13.2	0.0	0.047	12.9	0.0	1.0	1	0	0	1	1	1	0	Epstein-Barr	virus	nuclear	antigen	3	(EBNA-3)
Phage_integrase	PF00589.17	gi|408405328|ref|YP_006863311.1|	-	0.0026	17.4	0.0	0.043	13.4	0.0	2.2	1	1	0	1	1	1	1	Phage	integrase	family
Pyr_redox_2	PF07992.9	gi|408405329|ref|YP_006863312.1|	-	1.8e-06	27.9	1.2	3.6e-05	23.7	0.1	2.0	1	1	1	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
K_oxygenase	PF13434.1	gi|408405329|ref|YP_006863312.1|	-	0.0019	17.1	0.0	0.0022	16.9	0.0	1.1	1	0	0	1	1	1	1	L-lysine	6-monooxygenase	(NADPH-requiring)
Pyr_redox_3	PF13738.1	gi|408405329|ref|YP_006863312.1|	-	0.015	15.3	0.0	0.017	15.1	0.0	1.1	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_9	PF13454.1	gi|408405329|ref|YP_006863312.1|	-	0.024	14.3	0.0	0.44	10.2	0.0	2.1	2	0	0	2	2	2	0	FAD-NAD(P)-binding
Neisseria_PilC	PF05567.6	gi|408405329|ref|YP_006863312.1|	-	0.059	12.3	0.0	0.067	12.2	0.0	1.2	1	0	0	1	1	1	0	Neisseria	PilC	beta-propeller	domain
Pyr_redox_2	PF07992.9	gi|408405330|ref|YP_006863313.1|	-	3.5e-08	33.5	0.0	3.5e-08	33.5	0.0	1.2	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.17	gi|408405331|ref|YP_006863314.1|	-	3e-21	75.5	0.0	3.7e-21	75.2	0.0	1.0	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
Thioredoxin_3	PF13192.1	gi|408405332|ref|YP_006863315.1|	-	2.7e-08	33.5	2.2	5.3e-08	32.5	1.5	1.6	1	1	0	1	1	1	1	Thioredoxin	domain
Thioredoxin_4	PF13462.1	gi|408405332|ref|YP_006863315.1|	-	0.028	14.4	0.4	3.4	7.6	0.0	2.1	1	1	1	2	2	2	0	Thioredoxin
Glutaredoxin	PF00462.19	gi|408405332|ref|YP_006863315.1|	-	0.096	12.6	0.2	0.3	11.1	0.1	1.9	1	1	0	1	1	1	0	Glutaredoxin
DUF1525	PF07511.6	gi|408405332|ref|YP_006863315.1|	-	0.15	12.0	0.0	0.18	11.7	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1525)
Pyr_redox_2	PF07992.9	gi|408405333|ref|YP_006863316.1|	-	7.9e-40	136.8	0.6	3.3e-23	82.6	0.0	3.4	1	1	2	3	3	3	3	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.17	gi|408405333|ref|YP_006863316.1|	-	3.9e-29	100.8	0.8	9.6e-29	99.6	0.5	1.7	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
Pyr_redox	PF00070.22	gi|408405333|ref|YP_006863316.1|	-	6.3e-18	64.9	2.5	9.8e-15	54.7	0.1	2.7	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.1	gi|408405333|ref|YP_006863316.1|	-	1.4e-10	41.5	0.1	4.5e-05	23.6	0.0	2.5	2	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.17	gi|408405333|ref|YP_006863316.1|	-	4e-10	39.1	6.0	6.7e-10	38.3	0.3	3.3	1	1	2	3	3	3	1	Glucose	inhibited	division	protein	A
HI0933_like	PF03486.9	gi|408405333|ref|YP_006863316.1|	-	1.8e-07	29.9	8.7	0.005	15.3	1.2	3.8	3	1	1	4	4	4	2	HI0933-like	protein
FAD_oxidored	PF12831.2	gi|408405333|ref|YP_006863316.1|	-	3.5e-06	26.3	4.6	0.00018	20.7	1.9	2.3	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.19	gi|408405333|ref|YP_006863316.1|	-	6.3e-06	25.3	6.3	0.00033	19.6	1.6	2.7	2	1	1	3	3	3	2	FAD	binding	domain
K_oxygenase	PF13434.1	gi|408405333|ref|YP_006863316.1|	-	2.9e-05	23.1	0.8	0.12	11.3	0.0	3.1	2	1	1	3	3	3	2	L-lysine	6-monooxygenase	(NADPH-requiring)
DAO	PF01266.19	gi|408405333|ref|YP_006863316.1|	-	0.00024	20.1	5.4	0.092	11.6	1.0	2.7	2	1	0	2	2	2	2	FAD	dependent	oxidoreductase
Thi4	PF01946.12	gi|408405333|ref|YP_006863316.1|	-	0.0015	17.6	0.8	0.011	14.8	0.3	2.5	2	0	0	2	2	2	1	Thi4	family
NAD_binding_8	PF13450.1	gi|408405333|ref|YP_006863316.1|	-	0.0051	16.8	4.7	0.72	9.9	1.2	2.7	2	0	0	2	2	2	2	NAD(P)-binding	Rossmann-like	domain
FAD_binding_3	PF01494.14	gi|408405333|ref|YP_006863316.1|	-	0.029	13.4	1.2	0.26	10.3	0.1	2.2	2	0	0	2	2	2	0	FAD	binding	domain
3HCDH_N	PF02737.13	gi|408405333|ref|YP_006863316.1|	-	0.28	10.8	0.0	0.28	10.8	0.0	2.6	3	1	0	4	4	4	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
RseC_MucC	PF04246.7	gi|408405334|ref|YP_006863317.1|	-	0.06	12.9	0.0	0.083	12.4	0.0	1.3	1	1	0	1	1	1	0	Positive	regulator	of	sigma(E),	RseC/MucC
Bacteriocin_IIc	PF10439.4	gi|408405334|ref|YP_006863317.1|	-	0.5	10.5	8.6	0.71	10.0	6.0	1.2	1	0	0	1	1	1	0	Bacteriocin	class	II	with	double-glycine	leader	peptide
Gly-zipper_Omp	PF13488.1	gi|408405334|ref|YP_006863317.1|	-	1.6	8.4	8.4	2.3	7.8	5.8	1.2	1	0	0	1	1	1	0	Glycine	zipper
DUF3231	PF11553.3	gi|408405335|ref|YP_006863318.1|	-	8.4e-11	41.6	0.1	1.1e-10	41.2	0.1	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3231)
DUF303	PF03629.13	gi|408405335|ref|YP_006863318.1|	-	0.08	12.1	0.2	0.1	11.7	0.1	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF303)
HxlR	PF01638.12	gi|408405336|ref|YP_006863319.1|	-	3.6e-22	77.7	0.1	4.3e-22	77.5	0.1	1.1	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
PadR	PF03551.9	gi|408405336|ref|YP_006863319.1|	-	0.00073	19.2	0.0	0.0011	18.7	0.0	1.3	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_24	PF13412.1	gi|408405336|ref|YP_006863319.1|	-	0.0084	15.4	0.1	0.013	14.8	0.1	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
B-block_TFIIIC	PF04182.7	gi|408405336|ref|YP_006863319.1|	-	0.021	14.6	0.0	0.025	14.4	0.0	1.3	1	0	0	1	1	1	0	B-block	binding	subunit	of	TFIIIC
MarR	PF01047.17	gi|408405336|ref|YP_006863319.1|	-	0.1	12.3	0.0	0.15	11.8	0.0	1.2	1	0	0	1	1	1	0	MarR	family
RepL	PF05732.6	gi|408405336|ref|YP_006863319.1|	-	0.13	11.4	0.0	0.14	11.3	0.0	1.1	1	0	0	1	1	1	0	Firmicute	plasmid	replication	protein	(RepL)
DUF2627	PF11118.3	gi|408405337|ref|YP_006863320.1|	-	0.085	12.9	4.1	0.043	13.9	1.0	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2627)
AhpC-TSA	PF00578.16	gi|408405338|ref|YP_006863321.1|	-	1.7e-14	53.5	0.1	6e-14	51.7	0.0	1.7	2	0	0	2	2	2	1	AhpC/TSA	family
Redoxin	PF08534.5	gi|408405338|ref|YP_006863321.1|	-	1e-11	44.5	0.1	1.7e-11	43.8	0.0	1.3	1	0	0	1	1	1	1	Redoxin
Thioredoxin_8	PF13905.1	gi|408405338|ref|YP_006863321.1|	-	3.2e-08	33.5	0.0	4.9e-08	32.9	0.0	1.3	1	0	0	1	1	1	1	Thioredoxin-like
Thioredoxin_2	PF13098.1	gi|408405338|ref|YP_006863321.1|	-	1e-06	28.8	0.1	1.9e-06	28.0	0.0	1.4	1	1	0	1	1	1	1	Thioredoxin-like	domain
Thioredoxin	PF00085.15	gi|408405338|ref|YP_006863321.1|	-	2.8e-06	26.9	0.0	4.5e-05	23.0	0.0	2.1	2	0	0	2	2	2	1	Thioredoxin
SCO1-SenC	PF02630.9	gi|408405338|ref|YP_006863321.1|	-	0.00054	19.6	0.0	0.0009	18.8	0.0	1.4	1	1	0	1	1	1	1	SCO1/SenC
Thioredoxin_7	PF13899.1	gi|408405338|ref|YP_006863321.1|	-	0.00054	19.9	0.0	0.001	19.0	0.0	1.5	1	0	0	1	1	1	1	Thioredoxin-like
NADH_4Fe-4S	PF10589.4	gi|408405338|ref|YP_006863321.1|	-	0.1	11.7	0.1	0.18	11.0	0.0	1.3	1	0	0	1	1	1	0	NADH-ubiquinone	oxidoreductase-F	iron-sulfur	binding	region
DUF1297	PF06973.7	gi|408405340|ref|YP_006863323.1|	-	6.1e-73	244.1	0.0	8.5e-73	243.6	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1297)
DUF1246	PF06849.7	gi|408405340|ref|YP_006863323.1|	-	3.4e-47	159.2	0.0	9.7e-47	157.8	0.0	1.8	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF1246)
ATP-grasp_4	PF13535.1	gi|408405340|ref|YP_006863323.1|	-	0.00055	19.7	0.0	0.001	18.8	0.0	1.6	1	1	0	1	1	1	1	ATP-grasp	domain
MttA_Hcf106	PF02416.11	gi|408405341|ref|YP_006863324.1|	-	5e-14	51.1	2.5	6.3e-14	50.8	1.1	1.5	1	1	1	2	2	2	1	mttA/Hcf106	family
DUF349	PF03993.7	gi|408405341|ref|YP_006863324.1|	-	0.043	13.9	1.5	0.059	13.5	1.0	1.3	1	0	0	1	1	1	0	Domain	of	Unknown	Function	(DUF349)
Lip_A_acyltrans	PF03279.8	gi|408405341|ref|YP_006863324.1|	-	0.13	11.0	0.1	0.18	10.6	0.0	1.1	1	0	0	1	1	1	0	Bacterial	lipid	A	biosynthesis	acyltransferase
ATP-synt_B	PF00430.13	gi|408405341|ref|YP_006863324.1|	-	0.84	9.4	5.6	0.37	10.6	2.5	1.7	1	1	0	1	1	1	0	ATP	synthase	B/B'	CF(0)
DUF4051	PF13260.1	gi|408405341|ref|YP_006863324.1|	-	1.8	7.9	4.1	2.9	7.2	2.8	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF4051)
TatC	PF00902.13	gi|408405342|ref|YP_006863325.1|	-	7e-57	192.2	19.0	8.2e-57	192.0	13.2	1.0	1	0	0	1	1	1	1	Sec-independent	protein	translocase	protein	(TatC)
DDT	PF02791.12	gi|408405342|ref|YP_006863325.1|	-	0.14	11.9	1.5	0.21	11.3	0.1	1.9	1	1	1	2	2	2	0	DDT	domain
DUF2919	PF11143.3	gi|408405342|ref|YP_006863325.1|	-	0.16	11.8	5.0	0.1	12.3	1.6	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2919)
PqqD	PF05402.7	gi|408405343|ref|YP_006863326.1|	-	0.14	12.1	0.0	15	5.7	0.0	2.2	2	0	0	2	2	2	0	Coenzyme	PQQ	synthesis	protein	D	(PqqD)
BLOC1_2	PF10046.4	gi|408405345|ref|YP_006863328.1|	-	0.021	14.9	2.5	0.15	12.2	0.4	2.2	2	0	0	2	2	2	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
DUF3508	PF12018.3	gi|408405345|ref|YP_006863328.1|	-	0.1	11.5	0.2	0.14	11.1	0.1	1.3	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF3508)
NPV_P10	PF05531.7	gi|408405345|ref|YP_006863328.1|	-	0.14	12.4	0.6	9.4	6.5	0.0	2.5	2	1	0	2	2	2	0	Nucleopolyhedrovirus	P10	protein
DivIC	PF04977.10	gi|408405345|ref|YP_006863328.1|	-	0.31	10.5	3.5	3.8	7.0	0.1	2.5	2	1	0	2	2	2	0	Septum	formation	initiator
HEAT_2	PF13646.1	gi|408405347|ref|YP_006863330.1|	-	2e-26	92.0	1.7	1.4e-14	54.0	0.0	2.0	1	1	1	2	2	2	2	HEAT	repeats
HEAT	PF02985.17	gi|408405347|ref|YP_006863330.1|	-	9.4e-14	50.1	0.4	0.0095	15.9	0.1	4.2	4	0	0	4	4	4	4	HEAT	repeat
HEAT_PBS	PF03130.11	gi|408405347|ref|YP_006863330.1|	-	1.2e-13	50.1	1.8	0.0019	18.4	0.0	4.2	4	0	0	4	4	4	3	PBS	lyase	HEAT-like	repeat
HEAT_EZ	PF13513.1	gi|408405347|ref|YP_006863330.1|	-	1.1e-11	44.8	0.4	0.024	15.1	0.1	4.0	4	0	0	4	4	4	3	HEAT-like	repeat
Arm	PF00514.18	gi|408405347|ref|YP_006863330.1|	-	4.6e-06	26.2	0.7	0.11	12.3	0.0	4.0	3	1	1	4	4	4	1	Armadillo/beta-catenin-like	repeat
Cnd1	PF12717.2	gi|408405347|ref|YP_006863330.1|	-	0.0022	17.8	0.0	1.8	8.3	0.0	2.7	1	1	0	2	2	2	2	non-SMC	mitotic	condensation	complex	subunit	1
Adaptin_N	PF01602.15	gi|408405347|ref|YP_006863330.1|	-	0.011	14.1	0.1	1.3	7.2	0.0	2.2	1	1	1	2	2	2	0	Adaptin	N	terminal	region
DUF2019	PF09450.5	gi|408405347|ref|YP_006863330.1|	-	0.041	13.7	0.1	1.8	8.4	0.0	2.3	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF2019)
UPF0253	PF06786.7	gi|408405347|ref|YP_006863330.1|	-	2.6	8.2	4.3	2.6	8.2	0.1	2.7	3	1	0	3	3	3	0	Uncharacterised	protein	family	(UPF0253)
TrkH	PF02386.11	gi|408405349|ref|YP_006863332.1|	-	5.5e-28	97.5	36.5	1.2e-25	89.8	4.4	3.2	1	1	2	3	3	3	3	Cation	transport	protein
CBS	PF00571.23	gi|408405349|ref|YP_006863332.1|	-	5.3e-19	67.7	0.6	1.2e-09	37.8	0.0	2.5	2	0	0	2	2	2	2	CBS	domain
OrfB_Zn_ribbon	PF07282.6	gi|408405350|ref|YP_006863333.1|	-	1.7e-22	78.8	0.4	2.9e-22	78.0	0.3	1.4	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.14	gi|408405350|ref|YP_006863333.1|	-	3.7e-18	65.7	1.0	6.1e-18	65.0	0.7	1.3	1	0	0	1	1	1	1	Probable	transposase
HTH_OrfB_IS605	PF12323.3	gi|408405351|ref|YP_006863334.1|	-	5.5e-14	51.2	0.0	1.3e-13	50.0	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
OrfB_IS605	PF01385.14	gi|408405351|ref|YP_006863334.1|	-	1.3e-11	44.3	0.8	1.9e-11	43.8	0.6	1.3	1	0	0	1	1	1	1	Probable	transposase
Y1_Tnp	PF01797.11	gi|408405352|ref|YP_006863335.1|	-	3.5e-10	39.7	0.0	3.8e-10	39.6	0.0	1.0	1	0	0	1	1	1	1	Transposase	IS200	like
Y1_Tnp	PF01797.11	gi|408405353|ref|YP_006863336.1|	-	8.8e-08	32.0	0.3	9.2e-08	31.9	0.2	1.0	1	0	0	1	1	1	1	Transposase	IS200	like
MoCF_biosynth	PF00994.19	gi|408405353|ref|YP_006863336.1|	-	0.078	12.3	0.0	0.078	12.3	0.0	1.0	1	0	0	1	1	1	0	Probable	molybdopterin	binding	domain
ABC-3	PF00950.12	gi|408405354|ref|YP_006863337.1|	-	3.8e-71	239.3	38.2	4.4e-71	239.2	26.5	1.0	1	0	0	1	1	1	1	ABC	3	transport	family
FecCD	PF01032.13	gi|408405354|ref|YP_006863337.1|	-	6.9e-11	41.5	37.4	1.5e-10	40.4	17.8	2.1	1	1	0	2	2	2	2	FecCD	transport	family
ABC_tran	PF00005.22	gi|408405355|ref|YP_006863338.1|	-	9.7e-34	116.6	0.0	2.2e-33	115.4	0.0	1.5	2	0	0	2	2	2	1	ABC	transporter
AAA_21	PF13304.1	gi|408405355|ref|YP_006863338.1|	-	3.5e-13	50.1	0.1	5.8e-11	42.8	0.0	2.1	1	1	0	1	1	1	1	AAA	domain
AAA_15	PF13175.1	gi|408405355|ref|YP_006863338.1|	-	2.7e-06	26.6	0.2	0.00042	19.4	0.0	2.1	2	0	0	2	2	2	2	AAA	ATPase	domain
SMC_N	PF02463.14	gi|408405355|ref|YP_006863338.1|	-	0.00037	19.7	0.5	0.012	14.8	0.3	2.2	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
SbcCD_C	PF13558.1	gi|408405355|ref|YP_006863338.1|	-	0.0015	18.3	0.0	0.044	13.6	0.0	2.3	1	1	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
AAA_23	PF13476.1	gi|408405355|ref|YP_006863338.1|	-	0.002	18.4	3.6	0.0052	17.1	2.5	1.8	1	1	0	1	1	1	1	AAA	domain
Mg_chelatase	PF01078.16	gi|408405355|ref|YP_006863338.1|	-	0.0032	16.6	0.0	0.0057	15.8	0.0	1.4	1	0	0	1	1	1	1	Magnesium	chelatase,	subunit	ChlI
IstB_IS21	PF01695.12	gi|408405355|ref|YP_006863338.1|	-	0.0079	15.6	0.1	1.1	8.6	0.0	2.3	2	0	0	2	2	2	1	IstB-like	ATP	binding	protein
DUF258	PF03193.11	gi|408405355|ref|YP_006863338.1|	-	0.0088	15.2	0.0	0.018	14.2	0.0	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
T2SE	PF00437.15	gi|408405355|ref|YP_006863338.1|	-	0.012	14.4	0.0	0.019	13.8	0.0	1.4	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
AAA_33	PF13671.1	gi|408405355|ref|YP_006863338.1|	-	0.013	15.3	0.0	0.2	11.5	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
AAA_29	PF13555.1	gi|408405355|ref|YP_006863338.1|	-	0.014	14.8	0.0	0.029	13.8	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA	PF00004.24	gi|408405355|ref|YP_006863338.1|	-	0.017	15.2	0.8	0.35	11.0	0.5	2.4	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_10	PF12846.2	gi|408405355|ref|YP_006863338.1|	-	0.021	14.2	0.1	0.087	12.2	0.0	1.8	2	0	0	2	2	2	0	AAA-like	domain
MMR_HSR1	PF01926.18	gi|408405355|ref|YP_006863338.1|	-	0.044	13.7	0.1	0.13	12.2	0.1	1.9	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
Arch_ATPase	PF01637.13	gi|408405355|ref|YP_006863338.1|	-	0.1	12.2	0.0	0.16	11.6	0.0	1.5	1	1	0	1	1	1	0	Archaeal	ATPase
Zeta_toxin	PF06414.7	gi|408405355|ref|YP_006863338.1|	-	0.11	11.6	0.0	0.17	10.9	0.0	1.3	1	0	0	1	1	1	0	Zeta	toxin
DEAD	PF00270.24	gi|408405355|ref|YP_006863338.1|	-	0.12	11.8	0.1	2.8	7.4	0.1	2.2	1	1	0	1	1	1	0	DEAD/DEAH	box	helicase
AAA_30	PF13604.1	gi|408405355|ref|YP_006863338.1|	-	0.12	11.8	0.0	0.28	10.7	0.0	1.8	1	1	0	1	1	1	0	AAA	domain
TroA	PF01297.12	gi|408405356|ref|YP_006863339.1|	-	7.3e-79	264.6	0.0	8.5e-79	264.4	0.0	1.0	1	0	0	1	1	1	1	Periplasmic	solute	binding	protein	family
PsbX	PF06596.6	gi|408405356|ref|YP_006863339.1|	-	3.3	7.4	8.0	3.6	7.3	2.6	2.6	3	0	0	3	3	3	0	Photosystem	II	reaction	centre	X	protein	(PsbX)
NikR_C	PF08753.6	gi|408405357|ref|YP_006863340.1|	-	2.3e-11	43.4	0.8	3.7e-11	42.7	0.6	1.3	1	0	0	1	1	1	1	NikR	C	terminal	nickel	binding	domain
RHH_1	PF01402.16	gi|408405357|ref|YP_006863340.1|	-	2.6e-05	23.9	1.2	7.5e-05	22.4	0.3	2.2	2	0	0	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
DUF2191	PF09957.4	gi|408405357|ref|YP_006863340.1|	-	0.0017	18.1	0.1	0.0042	16.8	0.0	1.7	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2191)
RHH_2	PF03693.9	gi|408405357|ref|YP_006863340.1|	-	0.0068	16.5	0.6	0.034	14.3	0.1	2.0	1	1	1	2	2	2	1	Uncharacterised	protein	family	(UPF0156)
DUF1837	PF08878.6	gi|408405357|ref|YP_006863340.1|	-	0.051	13.1	0.2	0.067	12.7	0.1	1.3	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF1837)
TMEM107	PF14995.1	gi|408405359|ref|YP_006863342.1|	-	0.63	10.1	4.9	0.83	9.7	3.4	1.2	1	0	0	1	1	1	0	Transmembrane	protein
Response_reg	PF00072.19	gi|408405360|ref|YP_006863343.1|	-	2.6e-10	40.3	0.1	3.1e-10	40.0	0.0	1.1	1	0	0	1	1	1	1	Response	regulator	receiver	domain
C1_4	PF07975.7	gi|408405361|ref|YP_006863344.1|	-	0.066	13.2	0.1	0.082	12.9	0.0	1.2	1	0	0	1	1	1	0	TFIIH	C1-like	domain
A2L_zn_ribbon	PF08792.5	gi|408405361|ref|YP_006863344.1|	-	0.078	12.4	0.1	0.12	11.9	0.1	1.3	1	0	0	1	1	1	0	A2L	zinc	ribbon	domain
HATPase_c	PF02518.21	gi|408405362|ref|YP_006863345.1|	-	8.2e-28	96.3	0.5	3.6e-27	94.2	0.3	2.0	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HAMP	PF00672.20	gi|408405362|ref|YP_006863345.1|	-	3.9e-11	42.9	0.0	1.1e-10	41.5	0.0	1.8	1	0	0	1	1	1	1	HAMP	domain
HisKA	PF00512.20	gi|408405362|ref|YP_006863345.1|	-	1.7e-10	40.6	0.1	3.6e-10	39.6	0.1	1.6	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_5	PF14501.1	gi|408405362|ref|YP_006863345.1|	-	0.00033	20.2	0.0	0.0011	18.5	0.0	1.9	1	0	0	1	1	1	1	GHKL	domain
HATPase_c_3	PF13589.1	gi|408405362|ref|YP_006863345.1|	-	0.0049	16.5	0.0	0.01	15.4	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.1	gi|408405362|ref|YP_006863345.1|	-	0.013	15.3	0.0	0.024	14.4	0.0	1.4	1	0	0	1	1	1	0	Histidine	kinase-like	ATPase	domain
TarH	PF02203.10	gi|408405362|ref|YP_006863345.1|	-	0.21	11.4	1.4	0.27	11.0	0.2	1.8	2	0	0	2	2	2	0	Tar	ligand	binding	domain	homologue
DUF4231	PF14015.1	gi|408405362|ref|YP_006863345.1|	-	0.51	10.3	3.3	14	5.7	0.1	3.0	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF4231)
Response_reg	PF00072.19	gi|408405363|ref|YP_006863346.1|	-	3e-18	65.8	0.0	3.7e-18	65.5	0.0	1.1	1	0	0	1	1	1	1	Response	regulator	receiver	domain
DUF2208	PF09973.4	gi|408405369|ref|YP_006863352.1|	-	0.091	11.9	3.0	0.15	11.2	2.1	1.3	1	1	0	1	1	1	0	Predicted	membrane	protein	(DUF2208)
DUF805	PF05656.9	gi|408405369|ref|YP_006863352.1|	-	0.79	9.5	8.1	2	8.2	0.5	2.9	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF805)
DUF716	PF04819.7	gi|408405369|ref|YP_006863352.1|	-	1.6	8.1	8.8	0.036	13.4	1.7	1.5	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF716)
DUF723	PF05265.8	gi|408405370|ref|YP_006863353.1|	-	0.6	9.9	3.5	3	7.7	2.4	2.1	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF723)
DUF72	PF01904.13	gi|408405372|ref|YP_006863355.1|	-	4.3e-43	147.7	0.0	5.1e-43	147.4	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF72
Pyrid_oxidase_2	PF13883.1	gi|408405373|ref|YP_006863356.1|	-	0.12	12.1	1.0	0.19	11.4	0.2	1.7	2	0	0	2	2	2	0	Pyridoxamine	5'-phosphate	oxidase
Rad51	PF08423.6	gi|408405374|ref|YP_006863357.1|	-	2.9e-06	26.3	0.2	3.6e-06	26.0	0.2	1.2	1	0	0	1	1	1	1	Rad51
YmgB	PF10798.3	gi|408405376|ref|YP_006863359.1|	-	0.023	14.5	0.4	4.2	7.2	0.0	2.2	2	0	0	2	2	2	0	Biofilm	development	protein	YmgB/AriR
DNA_pol_B	PF00136.16	gi|408405377|ref|YP_006863360.1|	-	4.4e-39	134.5	0.6	9.3e-39	133.4	0.3	1.5	2	0	0	2	2	2	1	DNA	polymerase	family	B
DNA_pol_B_exo1	PF03104.14	gi|408405377|ref|YP_006863360.1|	-	3.2e-11	42.6	0.0	2.8e-10	39.5	0.0	2.1	1	1	0	1	1	1	1	DNA	polymerase	family	B,	exonuclease	domain
EcoRII-C	PF09019.6	gi|408405379|ref|YP_006863362.1|	-	1.2e-21	77.2	0.9	1.7e-21	76.7	0.6	1.3	1	0	0	1	1	1	1	EcoRII	C	terminal
N6_N4_Mtase	PF01555.13	gi|408405380|ref|YP_006863363.1|	-	2.4e-11	43.5	0.1	5.3e-09	35.8	0.0	2.6	2	1	0	2	2	2	2	DNA	methylase
Methyltransf_26	PF13659.1	gi|408405380|ref|YP_006863363.1|	-	1.6e-09	37.8	0.0	3e-09	36.9	0.0	1.5	1	1	0	1	1	1	1	Methyltransferase	domain
UPF0020	PF01170.13	gi|408405380|ref|YP_006863363.1|	-	1.9e-08	34.0	0.0	1.1e-06	28.2	0.0	2.3	2	0	0	2	2	2	1	Putative	RNA	methylase	family	UPF0020
MethyltransfD12	PF02086.10	gi|408405380|ref|YP_006863363.1|	-	0.011	15.2	0.0	0.024	14.0	0.0	1.6	1	1	0	1	1	1	0	D12	class	N6	adenine-specific	DNA	methyltransferase
N6_Mtase	PF02384.11	gi|408405380|ref|YP_006863363.1|	-	0.053	12.5	0.0	0.16	11.0	0.0	1.8	1	1	0	1	1	1	0	N-6	DNA	Methylase
Cons_hypoth95	PF03602.10	gi|408405380|ref|YP_006863363.1|	-	0.12	11.7	0.0	0.28	10.5	0.0	1.6	2	0	0	2	2	2	0	Conserved	hypothetical	protein	95
Methyltransf_31	PF13847.1	gi|408405380|ref|YP_006863363.1|	-	0.12	11.9	0.0	3	7.3	0.0	2.5	2	0	0	2	2	2	0	Methyltransferase	domain
PRANC	PF09372.5	gi|408405381|ref|YP_006863364.1|	-	0.025	14.5	0.5	0.041	13.8	0.4	1.3	1	0	0	1	1	1	0	PRANC	domain
MarR	PF01047.17	gi|408405382|ref|YP_006863365.1|	-	0.013	15.1	0.0	0.049	13.3	0.0	1.9	2	0	0	2	2	2	0	MarR	family
DUF708	PF05341.6	gi|408405382|ref|YP_006863365.1|	-	0.021	14.6	0.2	0.061	13.1	0.1	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF708)
HTH_45	PF14947.1	gi|408405382|ref|YP_006863365.1|	-	0.05	13.4	0.0	0.15	11.9	0.0	1.8	1	0	0	1	1	1	0	Winged	helix-turn-helix
HTH_24	PF13412.1	gi|408405382|ref|YP_006863365.1|	-	0.062	12.6	0.1	0.12	11.7	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
WHG	PF13305.1	gi|408405382|ref|YP_006863365.1|	-	0.069	13.7	0.0	0.17	12.4	0.0	1.7	1	0	0	1	1	1	0	WHG	domain
HTH_5	PF01022.15	gi|408405382|ref|YP_006863365.1|	-	0.098	12.3	0.0	0.2	11.3	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
zf-RanBP	PF00641.13	gi|408405383|ref|YP_006863366.1|	-	2.3	7.3	8.5	0.08	12.0	0.5	2.1	2	0	0	2	2	2	0	Zn-finger	in	Ran	binding	protein	and	others
Rpr2	PF04032.11	gi|408405386|ref|YP_006863369.1|	-	0.074	12.9	0.2	0.47	10.3	0.1	2.3	2	1	0	2	2	2	0	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
Ecl1	PF12855.2	gi|408405386|ref|YP_006863369.1|	-	0.17	11.1	1.8	0.32	10.3	1.2	1.4	1	0	0	1	1	1	0	Life-span	regulatory	factor
Turandot	PF07240.6	gi|408405387|ref|YP_006863370.1|	-	0.0085	15.5	0.0	0.028	13.8	0.0	1.7	2	0	0	2	2	2	1	Stress-inducible	humoral	factor	Turandot
MacB_PCD	PF12704.2	gi|408405387|ref|YP_006863370.1|	-	0.2	11.1	3.5	1.2	8.6	2.4	1.9	1	1	0	1	1	1	0	MacB-like	periplasmic	core	domain
DDE_Tnp_1	PF01609.16	gi|408405388|ref|YP_006863371.1|	-	0.0042	16.6	0.2	0.0078	15.7	0.1	1.5	1	1	0	1	1	1	1	Transposase	DDE	domain
DUF1815	PF08844.5	gi|408405388|ref|YP_006863371.1|	-	0.018	14.6	0.2	0.049	13.2	0.0	1.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1815)
zinc_ribbon_5	PF13719.1	gi|408405390|ref|YP_006863373.1|	-	0.15	11.6	0.6	0.32	10.6	0.0	1.9	2	0	0	2	2	2	0	zinc-ribbon	domain
DUF998	PF06197.8	gi|408405391|ref|YP_006863374.1|	-	0.0038	16.5	2.1	0.0043	16.3	1.5	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF998)
MARVEL	PF01284.18	gi|408405391|ref|YP_006863374.1|	-	0.0047	16.7	0.2	0.0054	16.5	0.1	1.1	1	0	0	1	1	1	1	Membrane-associating	domain
MFS_1	PF07690.11	gi|408405391|ref|YP_006863374.1|	-	0.0052	15.5	0.9	0.0058	15.3	0.6	1.0	1	0	0	1	1	1	1	Major	Facilitator	Superfamily
CoA_binding_3	PF13727.1	gi|408405391|ref|YP_006863374.1|	-	0.0053	16.6	0.2	0.0061	16.4	0.1	1.0	1	0	0	1	1	1	1	CoA-binding	domain
NfeD	PF01957.13	gi|408405391|ref|YP_006863374.1|	-	0.0094	16.1	0.9	0.01	15.9	0.6	1.0	1	0	0	1	1	1	1	NfeD-like	C-terminal,	partner-binding
DUF3487	PF11990.3	gi|408405391|ref|YP_006863374.1|	-	0.012	15.0	0.6	0.013	14.8	0.4	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3487)
Claudin_2	PF13903.1	gi|408405391|ref|YP_006863374.1|	-	0.033	13.8	1.2	0.039	13.6	0.8	1.1	1	0	0	1	1	1	0	PMP-22/EMP/MP20/Claudin	tight	junction
DUF418	PF04235.7	gi|408405391|ref|YP_006863374.1|	-	0.048	13.3	0.4	0.05	13.2	0.3	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF418)
Polysacc_synt_C	PF14667.1	gi|408405391|ref|YP_006863374.1|	-	0.064	13.0	2.7	0.073	12.8	1.9	1.0	1	0	0	1	1	1	0	Polysaccharide	biosynthesis	C-terminal	domain
ExoD	PF06055.7	gi|408405391|ref|YP_006863374.1|	-	0.068	12.2	2.0	0.081	12.0	1.4	1.1	1	0	0	1	1	1	0	Exopolysaccharide	synthesis,	ExoD
DUF3325	PF11804.3	gi|408405391|ref|YP_006863374.1|	-	0.11	12.4	1.5	0.16	11.8	1.1	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3325)
DUF485	PF04341.7	gi|408405391|ref|YP_006863374.1|	-	0.17	11.6	4.1	0.37	10.5	2.8	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function,	DUF485
DUF202	PF02656.10	gi|408405391|ref|YP_006863374.1|	-	0.22	11.7	4.4	0.57	10.4	3.0	2.0	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF202)
DUF2306	PF10067.4	gi|408405391|ref|YP_006863374.1|	-	0.54	10.4	3.3	12	6.0	0.1	2.0	1	1	1	2	2	2	0	Predicted	membrane	protein	(DUF2306)
DUF308	PF03729.8	gi|408405391|ref|YP_006863374.1|	-	2.9	7.9	11.4	9	6.3	7.9	1.7	1	1	1	2	2	2	0	Short	repeat	of	unknown	function	(DUF308)
SdpI	PF13630.1	gi|408405391|ref|YP_006863374.1|	-	3.5	7.3	7.2	16	5.2	5.0	1.8	1	1	0	1	1	1	0	SdpI/YhfL	protein	family
DUF4536	PF15055.1	gi|408405391|ref|YP_006863374.1|	-	8.8	6.4	7.7	22	5.1	1.5	2.7	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4536)
Prp18	PF02840.10	gi|408405393|ref|YP_006863376.1|	-	0.098	12.4	5.1	0.14	11.9	3.5	1.3	1	0	0	1	1	1	0	Prp18	domain
Ribosomal_L6e	PF01159.14	gi|408405393|ref|YP_006863376.1|	-	0.4	10.9	4.2	0.75	10.0	2.9	1.4	1	0	0	1	1	1	0	Ribosomal	protein	L6e
IncA	PF04156.9	gi|408405393|ref|YP_006863376.1|	-	0.74	9.3	12.2	1.1	8.8	8.5	1.2	1	0	0	1	1	1	0	IncA	protein
DUF148	PF02520.12	gi|408405396|ref|YP_006863379.1|	-	0.023	14.4	0.0	0.028	14.2	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	DUF148
Tna_leader	PF08053.6	gi|408405396|ref|YP_006863379.1|	-	0.72	9.2	2.4	1.8	8.0	0.0	2.1	2	0	0	2	2	2	0	Tryptophanese	operon	leader	peptide
DUF2225	PF09986.4	gi|408405397|ref|YP_006863380.1|	-	0.0014	18.0	0.1	0.0037	16.7	0.0	1.7	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2225)
DZR	PF12773.2	gi|408405397|ref|YP_006863380.1|	-	0.023	14.4	1.1	0.045	13.5	0.8	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
KxDL	PF10241.4	gi|408405397|ref|YP_006863380.1|	-	3.4	7.6	8.5	14	5.6	0.1	3.7	4	0	0	4	4	4	0	Uncharacterized	conserved	protein
DivIC	PF04977.10	gi|408405397|ref|YP_006863380.1|	-	5	6.6	8.1	0.99	8.9	1.6	2.6	2	0	0	2	2	2	0	Septum	formation	initiator
Spherulin4	PF12138.3	gi|408405398|ref|YP_006863381.1|	-	5.4e-13	48.9	0.4	9.7e-13	48.1	0.2	1.4	1	1	0	1	1	1	1	Spherulation-specific	family	4
DPRP	PF04244.8	gi|408405398|ref|YP_006863381.1|	-	0.0024	17.4	0.0	0.0034	16.9	0.0	1.2	1	0	0	1	1	1	1	Deoxyribodipyrimidine	photo-lyase-related	protein
zf-UBR	PF02207.15	gi|408405400|ref|YP_006863383.1|	-	0.0042	16.7	0.4	0.0045	16.6	0.3	1.1	1	0	0	1	1	1	1	Putative	zinc	finger	in	N-recognin	(UBR	box)
DUF870	PF05912.6	gi|408405400|ref|YP_006863383.1|	-	0.045	13.5	0.3	0.049	13.4	0.2	1.0	1	0	0	1	1	1	0	Caenorhabditis	elegans	protein	of	unknown	function	(DUF870)
zf-B_box	PF00643.19	gi|408405400|ref|YP_006863383.1|	-	0.069	13.0	1.9	0.11	12.4	1.3	1.4	1	1	0	1	1	1	0	B-box	zinc	finger
Cyclase	PF04199.8	gi|408405403|ref|YP_006863386.1|	-	6e-33	113.9	0.0	7.1e-33	113.6	0.0	1.1	1	0	0	1	1	1	1	Putative	cyclase
AsnC_trans_reg	PF01037.16	gi|408405404|ref|YP_006863387.1|	-	1.3e-13	50.4	0.2	1.4e-13	50.2	0.2	1.0	1	0	0	1	1	1	1	AsnC	family
Aminotran_5	PF00266.14	gi|408405405|ref|YP_006863388.1|	-	2.3e-70	237.2	0.0	2.7e-70	236.9	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class-V
Aminotran_1_2	PF00155.16	gi|408405405|ref|YP_006863388.1|	-	6.2e-06	25.4	0.0	9.3e-06	24.8	0.0	1.2	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
DegT_DnrJ_EryC1	PF01041.12	gi|408405405|ref|YP_006863388.1|	-	0.00027	20.0	0.0	0.0043	16.1	0.0	2.1	2	0	0	2	2	2	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Beta_elim_lyase	PF01212.16	gi|408405405|ref|YP_006863388.1|	-	0.0048	16.0	0.0	0.0054	15.9	0.0	1.2	1	0	0	1	1	1	1	Beta-eliminating	lyase
HTH_45	PF14947.1	gi|408405407|ref|YP_006863390.1|	-	3.4e-12	45.9	1.4	4e-12	45.7	1.0	1.0	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF4364	PF14277.1	gi|408405407|ref|YP_006863390.1|	-	0.00056	19.5	0.5	0.00064	19.3	0.4	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4364)
PgaD	PF13994.1	gi|408405408|ref|YP_006863391.1|	-	0.0018	17.7	0.5	0.0025	17.3	0.3	1.3	1	0	0	1	1	1	1	PgaD-like	protein
OST3_OST6	PF04756.8	gi|408405408|ref|YP_006863391.1|	-	0.0045	16.5	5.7	0.061	12.8	4.0	2.0	1	1	0	1	1	1	1	OST3	/	OST6	family
FxsA	PF04186.8	gi|408405408|ref|YP_006863391.1|	-	0.04	13.5	2.8	0.087	12.4	1.7	1.8	1	1	0	1	1	1	0	FxsA	cytoplasmic	membrane	protein
DUF2231	PF09990.4	gi|408405408|ref|YP_006863391.1|	-	0.15	12.3	5.5	0.26	11.6	3.8	1.3	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2231)
DUF2165	PF09933.4	gi|408405408|ref|YP_006863391.1|	-	0.23	11.1	1.8	0.23	11.1	0.2	1.7	2	0	0	2	2	2	0	Predicted	small	integral	membrane	protein	(DUF2165)
Ni_hydr_CYTB	PF01292.15	gi|408405408|ref|YP_006863391.1|	-	2.6	7.4	7.2	4.3	6.6	4.9	1.4	1	1	0	1	1	1	0	Prokaryotic	cytochrome	b561
Cpn60_TCP1	PF00118.19	gi|408405410|ref|YP_006863393.1|	-	2.3e-169	564.1	16.4	2.6e-169	563.9	11.4	1.0	1	0	0	1	1	1	1	TCP-1/cpn60	chaperonin	family
DUF1861	PF08950.5	gi|408405410|ref|YP_006863393.1|	-	0.019	13.7	0.1	0.035	12.9	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1861)
Ustilago_mating	PF05722.7	gi|408405410|ref|YP_006863393.1|	-	0.039	13.2	0.0	0.082	12.2	0.0	1.5	1	0	0	1	1	1	0	Ustilago	B	locus	mating-type	protein
Rhomboid	PF01694.17	gi|408405411|ref|YP_006863394.1|	-	8.6e-31	106.9	16.1	1.3e-30	106.3	11.2	1.2	1	0	0	1	1	1	1	Rhomboid	family
DUF1751	PF08551.5	gi|408405411|ref|YP_006863394.1|	-	0.016	15.5	0.6	0.029	14.6	0.0	1.8	2	0	0	2	2	2	0	Eukaryotic	integral	membrane	protein	(DUF1751)
zf-C2H2_4	PF13894.1	gi|408405412|ref|YP_006863395.1|	-	4.6e-06	26.5	1.8	6.2e-06	26.1	1.2	1.2	1	0	0	1	1	1	1	C2H2-type	zinc	finger
zf-C2H2	PF00096.21	gi|408405412|ref|YP_006863395.1|	-	0.00022	21.3	2.2	0.00029	20.9	1.5	1.2	1	0	0	1	1	1	1	Zinc	finger,	C2H2	type
zf-H2C2_5	PF13909.1	gi|408405412|ref|YP_006863395.1|	-	0.00069	19.6	1.3	0.0011	19.1	0.9	1.3	1	0	0	1	1	1	1	C2H2-type	zinc-finger	domain
DUF629	PF04780.7	gi|408405412|ref|YP_006863395.1|	-	0.0016	17.0	0.2	0.0016	17.0	0.1	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF629)
zf-BED	PF02892.10	gi|408405412|ref|YP_006863395.1|	-	0.0016	18.1	0.8	0.002	17.8	0.6	1.2	1	0	0	1	1	1	1	BED	zinc	finger
zf-H2C2_2	PF13465.1	gi|408405412|ref|YP_006863395.1|	-	0.0018	18.4	1.5	0.11	12.7	0.2	2.2	2	0	0	2	2	2	1	Zinc-finger	double	domain
zf-Di19	PF05605.7	gi|408405412|ref|YP_006863395.1|	-	0.0026	17.8	0.1	0.0032	17.5	0.1	1.1	1	0	0	1	1	1	1	Drought	induced	19	protein	(Di19),	zinc-binding
zf-C2H2_2	PF12756.2	gi|408405412|ref|YP_006863395.1|	-	0.018	15.1	0.2	0.02	15.0	0.2	1.1	1	0	0	1	1	1	0	C2H2	type	zinc-finger	(2	copies)
zf-MIZ	PF02891.15	gi|408405412|ref|YP_006863395.1|	-	0.019	14.4	0.3	0.03	13.8	0.2	1.3	1	0	0	1	1	1	0	MIZ/SP-RING	zinc	finger
DUF2296	PF10058.4	gi|408405412|ref|YP_006863395.1|	-	0.023	14.4	0.1	0.03	14.0	0.0	1.2	1	0	0	1	1	1	0	Predicted	integral	membrane	metal-binding	protein	(DUF2296)
OrfB_Zn_ribbon	PF07282.6	gi|408405412|ref|YP_006863395.1|	-	0.046	13.3	0.3	0.061	12.9	0.2	1.3	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
zf-like	PF04071.7	gi|408405412|ref|YP_006863395.1|	-	0.052	13.2	0.2	0.054	13.2	0.1	1.1	1	0	0	1	1	1	0	Cysteine-rich	small	domain
DUF1364	PF07102.7	gi|408405412|ref|YP_006863395.1|	-	0.074	12.9	0.2	0.079	12.8	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1364)
zf-C2H2_jaz	PF12171.3	gi|408405412|ref|YP_006863395.1|	-	0.12	12.5	0.6	0.16	12.1	0.4	1.3	1	0	0	1	1	1	0	Zinc-finger	double-stranded	RNA-binding
MFS_1	PF07690.11	gi|408405413|ref|YP_006863396.1|	-	3e-22	78.8	37.6	3e-22	78.8	26.1	1.8	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
Methyltransf_9	PF08003.6	gi|408405413|ref|YP_006863396.1|	-	0.18	10.4	0.0	0.29	9.7	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1698)
AsnC_trans_reg	PF01037.16	gi|408405414|ref|YP_006863397.1|	-	7.2e-13	48.0	0.3	7.6e-13	47.9	0.2	1.0	1	0	0	1	1	1	1	AsnC	family
GYD	PF08734.6	gi|408405414|ref|YP_006863397.1|	-	0.022	14.4	0.1	0.027	14.2	0.0	1.2	1	0	0	1	1	1	0	GYD	domain
DUF3600	PF12207.3	gi|408405414|ref|YP_006863397.1|	-	0.047	13.2	0.1	0.05	13.1	0.1	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3600)
DUF3937	PF13073.1	gi|408405415|ref|YP_006863398.1|	-	0.073	12.9	0.0	0.11	12.3	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3937)
HTH_20	PF12840.2	gi|408405416|ref|YP_006863399.1|	-	4e-06	26.5	0.2	7e-06	25.7	0.1	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.2	gi|408405416|ref|YP_006863399.1|	-	0.001	18.6	0.2	0.084	12.5	0.1	2.3	2	0	0	2	2	2	1	MarR	family
HTH_45	PF14947.1	gi|408405416|ref|YP_006863399.1|	-	0.014	15.1	0.2	0.034	13.9	0.1	1.6	1	0	0	1	1	1	0	Winged	helix-turn-helix
HTH_27	PF13463.1	gi|408405416|ref|YP_006863399.1|	-	0.071	13.4	0.0	0.15	12.3	0.0	1.5	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
Chromadorea_ALT	PF05535.7	gi|408405416|ref|YP_006863399.1|	-	0.15	12.1	0.0	0.46	10.6	0.0	1.8	2	0	0	2	2	2	0	Chromadorea	ALT	protein
Ribosomal_L11_N	PF03946.9	gi|408405418|ref|YP_006863401.1|	-	1.3e-21	75.7	1.1	2.2e-21	75.0	0.7	1.4	1	0	0	1	1	1	1	Ribosomal	protein	L11,	N-terminal	domain
Ribosomal_L11	PF00298.14	gi|408405418|ref|YP_006863401.1|	-	8e-20	70.7	0.9	1.6e-19	69.8	0.6	1.5	1	0	0	1	1	1	1	Ribosomal	protein	L11,	RNA	binding	domain
Peptidase_S8	PF00082.17	gi|408405419|ref|YP_006863402.1|	-	9.8e-30	103.6	0.0	2.7e-29	102.2	0.0	1.8	1	1	0	1	1	1	1	Subtilase	family
Big_3_4	PF13754.1	gi|408405419|ref|YP_006863402.1|	-	7.3e-17	61.4	7.1	5.6e-05	23.3	0.0	5.4	3	1	1	4	4	4	3	Bacterial	Ig-like	domain	(group	3)
Big_3_3	PF13750.1	gi|408405419|ref|YP_006863402.1|	-	8e-10	38.3	0.5	0.025	14.0	0.1	3.7	3	0	0	3	3	3	3	Bacterial	Ig-like	domain	(group	3)
Big_3_2	PF12245.3	gi|408405419|ref|YP_006863402.1|	-	2.9e-06	26.7	0.0	0.022	14.2	0.0	3.0	2	0	0	2	2	2	2	Bacterial	Ig-like	domain	(group	3)
DUF4625	PF15418.1	gi|408405419|ref|YP_006863402.1|	-	0.0043	17.1	0.2	1.9	8.6	0.0	3.0	3	0	0	3	3	3	2	Domain	of	unknown	function	(DUF4625)
Thioredoxin	PF00085.15	gi|408405420|ref|YP_006863403.1|	-	5.9e-28	96.6	0.0	6.7e-28	96.4	0.0	1.1	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_8	PF13905.1	gi|408405420|ref|YP_006863403.1|	-	1.4e-08	34.7	0.1	1.1e-06	28.6	0.0	2.2	1	1	1	2	2	2	1	Thioredoxin-like
Thioredoxin_2	PF13098.1	gi|408405420|ref|YP_006863403.1|	-	6.1e-08	32.8	0.0	5e-07	29.8	0.0	2.0	1	1	0	1	1	1	1	Thioredoxin-like	domain
Redoxin	PF08534.5	gi|408405420|ref|YP_006863403.1|	-	5.6e-07	29.2	0.1	1.3e-06	28.0	0.1	1.7	1	1	0	1	1	1	1	Redoxin
AhpC-TSA	PF00578.16	gi|408405420|ref|YP_006863403.1|	-	0.00018	21.1	0.1	0.0004	20.0	0.1	1.6	1	1	0	1	1	1	1	AhpC/TSA	family
Thioredoxin_7	PF13899.1	gi|408405420|ref|YP_006863403.1|	-	0.0002	21.3	0.3	0.00035	20.5	0.2	1.4	1	1	0	1	1	1	1	Thioredoxin-like
Thioredoxin_9	PF14595.1	gi|408405420|ref|YP_006863403.1|	-	0.00074	19.0	0.0	0.00079	18.9	0.0	1.2	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_3	PF13192.1	gi|408405420|ref|YP_006863403.1|	-	0.012	15.3	0.0	0.017	14.9	0.0	1.2	1	0	0	1	1	1	0	Thioredoxin	domain
T4_deiodinase	PF00837.12	gi|408405420|ref|YP_006863403.1|	-	0.11	11.5	0.0	0.12	11.4	0.0	1.1	1	0	0	1	1	1	0	Iodothyronine	deiodinase
GTP_EFTU	PF00009.22	gi|408405421|ref|YP_006863404.1|	-	2e-24	86.0	0.0	4.7e-24	84.8	0.0	1.6	1	0	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
IF-2	PF11987.3	gi|408405421|ref|YP_006863404.1|	-	1.1e-22	79.9	5.6	2.4e-22	78.8	0.9	2.3	2	0	0	2	2	2	1	Translation-initiation	factor	2
GTP_EFTU_D4	PF14578.1	gi|408405421|ref|YP_006863404.1|	-	8.5e-14	50.9	0.3	8.5e-14	50.9	0.2	2.4	2	0	0	2	2	2	1	Elongation	factor	Tu	domain	4
GTP_EFTU_D2	PF03144.20	gi|408405421|ref|YP_006863404.1|	-	2.8e-05	24.1	1.5	0.00061	19.8	0.0	2.9	2	0	0	2	2	2	1	Elongation	factor	Tu	domain	2
ATP_bind_1	PF03029.12	gi|408405421|ref|YP_006863404.1|	-	0.0013	18.3	0.0	0.0024	17.4	0.0	1.4	1	0	0	1	1	1	1	Conserved	hypothetical	ATP	binding	protein
Ras	PF00071.17	gi|408405421|ref|YP_006863404.1|	-	0.012	15.0	0.0	0.039	13.3	0.0	1.8	2	0	0	2	2	2	0	Ras	family
MMR_HSR1	PF01926.18	gi|408405421|ref|YP_006863404.1|	-	0.02	14.8	0.2	0.085	12.8	0.0	2.1	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
NDK	PF00334.14	gi|408405422|ref|YP_006863405.1|	-	7.8e-49	164.9	0.0	8.6e-49	164.8	0.0	1.0	1	0	0	1	1	1	1	Nucleoside	diphosphate	kinase
Ribosomal_L24e	PF01246.15	gi|408405423|ref|YP_006863406.1|	-	1.3e-17	63.3	0.8	1.6e-17	63.1	0.5	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L24e
DUF581	PF04570.9	gi|408405423|ref|YP_006863406.1|	-	0.0026	17.0	0.5	0.0043	16.3	0.4	1.4	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF581)
zf-FCS	PF06467.9	gi|408405423|ref|YP_006863406.1|	-	0.0031	17.1	2.2	0.0046	16.5	1.5	1.3	1	0	0	1	1	1	1	MYM-type	Zinc	finger	with	FCS	sequence	motif
DUF2175	PF09943.4	gi|408405423|ref|YP_006863406.1|	-	0.01	15.8	0.2	0.012	15.6	0.1	1.1	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2175)
DUF2116	PF09889.4	gi|408405423|ref|YP_006863406.1|	-	0.067	12.9	2.5	0.26	11.0	0.3	2.0	2	0	0	2	2	2	0	Uncharacterized	protein	containing	a	Zn-ribbon	(DUF2116)
A2L_zn_ribbon	PF08792.5	gi|408405423|ref|YP_006863406.1|	-	0.54	9.7	2.8	21	4.7	0.0	2.6	2	1	1	3	3	3	0	A2L	zinc	ribbon	domain
Ribosomal_S28e	PF01200.13	gi|408405424|ref|YP_006863407.1|	-	2.3e-30	104.1	7.0	2.5e-30	104.0	4.8	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S28e
Ribosomal_L7Ae	PF01248.21	gi|408405425|ref|YP_006863408.1|	-	3.1e-27	93.8	0.0	3.7e-27	93.6	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L7Ae/L30e/S12e/Gadd45	family
PELOTA_1	PF15608.1	gi|408405425|ref|YP_006863408.1|	-	0.016	15.0	0.1	0.021	14.5	0.1	1.2	1	0	0	1	1	1	0	PELOTA	RNA	binding	domain
eRF1_3	PF03465.10	gi|408405425|ref|YP_006863408.1|	-	0.13	12.5	0.0	0.4	10.9	0.0	1.8	1	1	0	1	1	1	0	eRF1	domain	3
PGM_PMM_I	PF02878.11	gi|408405426|ref|YP_006863409.1|	-	8.9e-39	132.1	0.1	1e-37	128.6	0.0	2.3	2	0	0	2	2	2	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	I
PGM_PMM_II	PF02879.11	gi|408405426|ref|YP_006863409.1|	-	1.5e-21	76.6	0.2	3.5e-21	75.4	0.1	1.7	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	II
PGM_PMM_III	PF02880.11	gi|408405426|ref|YP_006863409.1|	-	2.8e-19	69.2	0.1	5.2e-19	68.3	0.0	1.4	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	III
PGM_PMM_IV	PF00408.15	gi|408405426|ref|YP_006863409.1|	-	1.5e-09	37.7	0.0	3.9e-09	36.3	0.0	1.7	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	C-terminal	domain
Phage_integrase	PF00589.17	gi|408405428|ref|YP_006863411.1|	-	6.1e-15	55.3	0.0	1.1e-14	54.4	0.0	1.5	1	0	0	1	1	1	1	Phage	integrase	family
zf-ribbon_3	PF13248.1	gi|408405428|ref|YP_006863411.1|	-	2.8e-05	23.1	1.4	4.4e-05	22.5	1.0	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.2	gi|408405428|ref|YP_006863411.1|	-	0.0036	17.0	0.8	0.0064	16.2	0.5	1.3	1	0	0	1	1	1	1	Double	zinc	ribbon
YhfH	PF14149.1	gi|408405428|ref|YP_006863411.1|	-	0.014	15.2	5.1	0.13	12.1	0.2	2.5	1	1	1	2	2	2	0	YhfH-like	protein
Ribosomal_L37e	PF01907.14	gi|408405428|ref|YP_006863411.1|	-	0.021	14.6	1.3	0.045	13.5	0.9	1.5	1	0	0	1	1	1	0	Ribosomal	protein	L37e
TF_Zn_Ribbon	PF08271.7	gi|408405428|ref|YP_006863411.1|	-	0.092	12.0	2.7	0.32	10.3	1.9	1.9	1	1	0	1	1	1	0	TFIIB	zinc-binding
tRNA-synt_1g	PF09334.6	gi|408405428|ref|YP_006863411.1|	-	0.14	10.8	0.1	0.2	10.2	0.1	1.2	1	0	0	1	1	1	0	tRNA	synthetases	class	I	(M)
zinc_ribbon_2	PF13240.1	gi|408405428|ref|YP_006863411.1|	-	0.29	10.6	6.4	1.1	8.8	4.5	1.9	1	1	0	1	1	1	0	zinc-ribbon	domain
UPF0547	PF10571.4	gi|408405428|ref|YP_006863411.1|	-	0.42	10.3	6.2	1.4	8.6	4.3	1.9	1	1	0	1	1	1	0	Uncharacterised	protein	family	UPF0547
zf-tcix	PF14952.1	gi|408405428|ref|YP_006863411.1|	-	2	7.7	10.4	33	3.9	6.9	2.3	1	1	1	2	2	2	0	Putative	treble-clef,	zinc-finger,	Zn-binding
RHH_1	PF01402.16	gi|408405430|ref|YP_006863413.1|	-	0.0008	19.2	0.0	0.0013	18.5	0.0	1.3	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
DUF217	PF02697.9	gi|408405430|ref|YP_006863413.1|	-	0.05	13.8	0.0	0.076	13.2	0.0	1.3	1	1	0	1	1	1	0	Uncharacterized	ACR,	COG1753
RHH_2	PF03693.9	gi|408405431|ref|YP_006863414.1|	-	0.0019	18.2	0.0	0.0023	18.0	0.0	1.1	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0156)
RHH_1	PF01402.16	gi|408405431|ref|YP_006863414.1|	-	0.11	12.4	0.0	0.15	12.0	0.0	1.3	1	1	0	1	1	1	0	Ribbon-helix-helix	protein,	copG	family
zf-CDGSH	PF09360.5	gi|408405432|ref|YP_006863415.1|	-	4.1e-15	55.3	0.2	6.8e-15	54.6	0.1	1.4	1	0	0	1	1	1	1	Iron-binding	zinc	finger	CDGSH	type
Adeno_E3	PF06040.6	gi|408405433|ref|YP_006863416.1|	-	3.1	7.7	5.7	0.29	11.0	0.2	2.1	2	1	1	3	3	3	0	Adenovirus	E3	protein
Kinocilin	PF15033.1	gi|408405433|ref|YP_006863416.1|	-	7.6	6.0	7.6	1.3	8.5	1.0	2.3	2	0	0	2	2	2	0	Kinocilin	protein
DUF4367	PF14285.1	gi|408405434|ref|YP_006863417.1|	-	0.018	14.3	0.4	0.021	14.1	0.3	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4367)
RskA	PF10099.4	gi|408405434|ref|YP_006863417.1|	-	0.026	14.2	0.7	0.033	13.9	0.5	1.2	1	0	0	1	1	1	0	Anti-sigma-K	factor	rskA
DUF4179	PF13786.1	gi|408405434|ref|YP_006863417.1|	-	0.034	14.3	0.9	0.045	13.9	0.6	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4179)
HAMP	PF00672.20	gi|408405434|ref|YP_006863417.1|	-	0.045	13.9	0.1	0.058	13.5	0.1	1.2	1	0	0	1	1	1	0	HAMP	domain
Lipoprotein_X	PF03305.8	gi|408405434|ref|YP_006863417.1|	-	0.076	12.3	0.1	0.089	12.1	0.1	1.1	1	0	0	1	1	1	0	Mycoplasma	MG185/MG260	protein
ETRAMP	PF09716.5	gi|408405434|ref|YP_006863417.1|	-	0.1	12.5	0.0	0.15	11.9	0.0	1.3	1	0	0	1	1	1	0	Malarial	early	transcribed	membrane	protein	(ETRAMP)
Arc_PepC_II	PF06847.6	gi|408405435|ref|YP_006863418.1|	-	2.2e-06	28.0	0.3	1.4e-05	25.4	0.2	1.8	1	1	0	1	1	1	1	Archaeal	Peptidase	A24	C-terminus	Type	II
CD4-extracel	PF09191.5	gi|408405435|ref|YP_006863418.1|	-	0.14	12.1	0.0	0.2	11.6	0.0	1.3	1	1	0	1	1	1	0	CD4,	extracellular
Na_Ca_ex	PF01699.19	gi|408405438|ref|YP_006863421.1|	-	3.7e-34	117.3	39.8	1.3e-20	73.3	10.1	2.5	3	0	0	3	3	3	2	Sodium/calcium	exchanger	protein
FA_desaturase	PF00487.19	gi|408405438|ref|YP_006863421.1|	-	7.1	5.9	13.9	19	4.5	1.8	3.3	3	0	0	3	3	3	0	Fatty	acid	desaturase
Hemerythrin	PF01814.18	gi|408405439|ref|YP_006863422.1|	-	0.0076	16.4	0.1	0.0086	16.2	0.1	1.2	1	0	0	1	1	1	1	Hemerythrin	HHE	cation	binding	domain
SNO	PF01174.14	gi|408405441|ref|YP_006863424.1|	-	2.9e-48	164.0	0.2	3.3e-48	163.8	0.1	1.0	1	0	0	1	1	1	1	SNO	glutamine	amidotransferase	family
GATase_3	PF07685.9	gi|408405441|ref|YP_006863424.1|	-	3.6e-13	49.3	0.0	6.1e-13	48.6	0.0	1.3	1	0	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
GATase	PF00117.23	gi|408405441|ref|YP_006863424.1|	-	1e-11	44.6	0.0	2.5e-11	43.3	0.0	1.5	1	1	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.8	gi|408405441|ref|YP_006863424.1|	-	9.9e-08	31.6	0.0	6.9e-07	28.9	0.0	2.1	1	1	0	1	1	1	1	Peptidase	C26
Peptidase_S51	PF03575.12	gi|408405441|ref|YP_006863424.1|	-	0.00091	19.0	0.0	0.0013	18.4	0.0	1.2	1	0	0	1	1	1	1	Peptidase	family	S51
DJ-1_PfpI	PF01965.19	gi|408405441|ref|YP_006863424.1|	-	0.07	12.5	0.0	0.11	11.9	0.0	1.4	1	0	0	1	1	1	0	DJ-1/PfpI	family
SOR_SNZ	PF01680.12	gi|408405442|ref|YP_006863425.1|	-	2.8e-93	311.2	4.7	3.7e-93	310.8	3.2	1.2	1	0	0	1	1	1	1	SOR/SNZ	family
ThiG	PF05690.9	gi|408405442|ref|YP_006863425.1|	-	6.7e-08	31.9	5.8	1.4e-06	27.5	0.1	2.4	2	1	0	2	2	2	2	Thiazole	biosynthesis	protein	ThiG
Dus	PF01207.12	gi|408405442|ref|YP_006863425.1|	-	1.7e-05	23.7	0.5	0.061	12.1	0.0	2.4	2	0	0	2	2	2	2	Dihydrouridine	synthase	(Dus)
His_biosynth	PF00977.16	gi|408405442|ref|YP_006863425.1|	-	2e-05	23.9	1.3	0.031	13.5	0.0	3.2	2	1	0	2	2	2	1	Histidine	biosynthesis	protein
IGPS	PF00218.16	gi|408405442|ref|YP_006863425.1|	-	0.00076	18.6	0.1	0.012	14.6	0.0	2.4	2	1	0	2	2	2	1	Indole-3-glycerol	phosphate	synthase
NanE	PF04131.9	gi|408405442|ref|YP_006863425.1|	-	0.0019	17.2	2.9	0.14	11.0	0.0	2.8	2	1	0	2	2	2	2	Putative	N-acetylmannosamine-6-phosphate	epimerase
TMP-TENI	PF02581.12	gi|408405442|ref|YP_006863425.1|	-	0.0069	15.5	0.5	0.49	9.4	0.0	2.5	2	0	0	2	2	2	1	Thiamine	monophosphate	synthase/TENI
NMO	PF03060.10	gi|408405442|ref|YP_006863425.1|	-	0.019	14.1	8.2	0.16	11.1	0.1	2.4	2	1	0	2	2	2	0	Nitronate	monooxygenase
OMPdecase	PF00215.19	gi|408405442|ref|YP_006863425.1|	-	0.027	13.8	0.0	1.7	7.9	0.0	2.4	1	1	1	2	2	2	0	Orotidine	5'-phosphate	decarboxylase	/	HUMPS	family
FMN_dh	PF01070.13	gi|408405442|ref|YP_006863425.1|	-	0.043	12.6	1.6	0.16	10.8	0.0	2.2	2	1	0	2	2	2	0	FMN-dependent	dehydrogenase
Aconitase	PF00330.15	gi|408405444|ref|YP_006863427.1|	-	1e-112	377.0	1.5	9.7e-84	281.4	0.0	2.1	1	1	1	2	2	2	2	Aconitase	family	(aconitate	hydratase)
Aconitase_C	PF00694.14	gi|408405444|ref|YP_006863427.1|	-	1.3e-22	80.3	0.1	3.3e-22	79.0	0.1	1.7	1	0	0	1	1	1	1	Aconitase	C-terminal	domain
DUF521	PF04412.8	gi|408405444|ref|YP_006863427.1|	-	0.00079	18.0	0.0	0.0013	17.4	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF521)
zf-TFIIB	PF13453.1	gi|408405445|ref|YP_006863428.1|	-	0.0033	16.5	0.5	0.28	10.3	0.1	2.7	3	0	0	3	3	3	1	Transcription	factor	zinc-finger
OrfB_Zn_ribbon	PF07282.6	gi|408405445|ref|YP_006863428.1|	-	0.0035	16.9	0.8	0.086	12.5	0.1	2.2	2	0	0	2	2	2	1	Putative	transposase	DNA-binding	domain
DZR	PF12773.2	gi|408405445|ref|YP_006863428.1|	-	0.009	15.8	0.2	0.016	14.9	0.1	1.4	1	0	0	1	1	1	1	Double	zinc	ribbon
Zn-ribbon_8	PF09723.5	gi|408405445|ref|YP_006863428.1|	-	0.014	15.3	1.9	0.014	15.2	0.5	1.7	2	0	0	2	2	2	0	Zinc	ribbon	domain
zinc_ribbon_2	PF13240.1	gi|408405445|ref|YP_006863428.1|	-	0.023	14.2	0.2	0.023	14.2	0.1	1.9	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-ribbon_3	PF13248.1	gi|408405445|ref|YP_006863428.1|	-	0.032	13.4	0.4	0.071	12.3	0.0	1.7	2	0	0	2	2	2	0	zinc-ribbon	domain
HypA	PF01155.14	gi|408405445|ref|YP_006863428.1|	-	0.052	13.2	0.1	0.062	12.9	0.1	1.2	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
zf-IS66	PF13005.2	gi|408405445|ref|YP_006863428.1|	-	0.053	13.5	2.2	1.9	8.5	0.4	2.3	1	1	1	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
Zn_Tnp_IS1595	PF12760.2	gi|408405445|ref|YP_006863428.1|	-	0.082	12.7	0.1	0.2	11.4	0.0	1.7	2	0	0	2	2	2	0	Transposase	zinc-ribbon	domain
OS-D	PF03392.8	gi|408405445|ref|YP_006863428.1|	-	0.15	12.0	0.4	0.18	11.8	0.3	1.3	1	1	0	1	1	1	0	Insect	pheromone-binding	family,	A10/OS-D
zf-CCHC_5	PF14787.1	gi|408405445|ref|YP_006863428.1|	-	0.34	10.4	3.0	0.88	9.1	2.1	1.7	1	0	0	1	1	1	0	GAG-polyprotein	viral	zinc-finger
zf-C4_Topoisom	PF01396.14	gi|408405445|ref|YP_006863428.1|	-	3.4	7.2	5.5	0.75	9.3	0.3	2.2	3	0	0	3	3	3	0	Topoisomerase	DNA	binding	C4	zinc	finger
Spherulin4	PF12138.3	gi|408405446|ref|YP_006863429.1|	-	8.6e-12	45.0	0.9	1.5e-11	44.2	0.6	1.3	1	0	0	1	1	1	1	Spherulation-specific	family	4
HAD	PF12710.2	gi|408405446|ref|YP_006863429.1|	-	0.025	14.7	0.0	0.055	13.6	0.0	1.6	1	0	0	1	1	1	0	haloacid	dehalogenase-like	hydrolase
GDPD	PF03009.12	gi|408405446|ref|YP_006863429.1|	-	0.038	13.5	0.0	0.12	11.8	0.0	1.8	2	0	0	2	2	2	0	Glycerophosphoryl	diester	phosphodiesterase	family
TFIIB	PF00382.14	gi|408405447|ref|YP_006863430.1|	-	2.5e-26	91.2	3.3	1.3e-15	56.9	0.0	2.2	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.7	gi|408405447|ref|YP_006863430.1|	-	2.5e-10	39.4	0.9	4.8e-10	38.5	0.6	1.5	1	0	0	1	1	1	1	TFIIB	zinc-binding
Cyclin_N	PF00134.18	gi|408405447|ref|YP_006863430.1|	-	0.0015	18.0	0.4	0.033	13.7	0.0	2.2	2	0	0	2	2	2	1	Cyclin,	N-terminal	domain
zf-ribbon_3	PF13248.1	gi|408405447|ref|YP_006863430.1|	-	0.0065	15.6	1.4	0.014	14.5	0.9	1.6	1	0	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.2	gi|408405447|ref|YP_006863430.1|	-	0.029	14.2	0.2	0.078	12.8	0.2	1.7	1	0	0	1	1	1	0	Double	zinc	ribbon
Cyclin_C	PF02984.14	gi|408405447|ref|YP_006863430.1|	-	0.03	14.2	0.2	0.77	9.7	0.2	2.2	1	1	1	2	2	2	0	Cyclin,	C-terminal	domain
Auto_anti-p27	PF06677.7	gi|408405447|ref|YP_006863430.1|	-	0.06	13.1	0.9	0.16	11.7	0.6	1.7	1	0	0	1	1	1	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
SIS	PF01380.17	gi|408405448|ref|YP_006863431.1|	-	1.2e-47	160.7	2.7	2.9e-25	88.3	1.4	2.3	2	0	0	2	2	2	2	SIS	domain
GATase_6	PF13522.1	gi|408405448|ref|YP_006863431.1|	-	8.7e-22	77.5	0.0	2e-21	76.3	0.0	1.6	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
GATase_2	PF00310.16	gi|408405448|ref|YP_006863431.1|	-	3.1e-19	68.9	0.0	2.2e-15	56.2	0.0	2.5	1	1	1	2	2	2	2	Glutamine	amidotransferases	class-II
GATase_7	PF13537.1	gi|408405448|ref|YP_006863431.1|	-	2.3e-17	62.8	0.0	5.4e-17	61.6	0.0	1.7	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
GATase_4	PF13230.1	gi|408405448|ref|YP_006863431.1|	-	0.00015	20.5	0.0	0.00024	19.9	0.0	1.2	1	0	0	1	1	1	1	Glutamine	amidotransferases	class-II
SIS_2	PF13580.1	gi|408405448|ref|YP_006863431.1|	-	0.0037	16.9	3.7	0.052	13.2	0.2	3.2	2	1	1	3	3	3	1	SIS	domain
CW_binding_2	PF04122.7	gi|408405448|ref|YP_006863431.1|	-	0.007	16.5	1.4	1.2	9.4	0.2	2.7	2	0	0	2	2	2	1	Putative	cell	wall	binding	repeat	2
POR_N	PF01855.14	gi|408405449|ref|YP_006863432.1|	-	1.7e-61	207.6	0.0	2.5e-61	207.1	0.0	1.2	1	0	0	1	1	1	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
POR	PF01558.13	gi|408405449|ref|YP_006863432.1|	-	3e-35	121.6	0.1	5.5e-35	120.8	0.1	1.4	1	0	0	1	1	1	1	Pyruvate	ferredoxin/flavodoxin	oxidoreductase
Transketolase_C	PF02780.15	gi|408405449|ref|YP_006863432.1|	-	3.4e-06	27.0	0.1	1.6e-05	24.8	0.0	2.2	2	0	0	2	2	2	1	Transketolase,	C-terminal	domain
TPP_enzyme_N	PF02776.13	gi|408405449|ref|YP_006863432.1|	-	0.00046	19.7	0.0	0.0023	17.4	0.0	2.1	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
DUF3845	PF12956.2	gi|408405449|ref|YP_006863432.1|	-	0.044	13.1	0.0	0.081	12.3	0.0	1.4	1	0	0	1	1	1	0	Domain	of	Unknown	Function	with	PDB	structure
Dicty_REP	PF05086.7	gi|408405449|ref|YP_006863432.1|	-	0.13	10.0	0.0	0.17	9.5	0.0	1.1	1	0	0	1	1	1	0	Dictyostelium	(Slime	Mold)	REP	protein
TPP_enzyme_C	PF02775.16	gi|408405450|ref|YP_006863433.1|	-	1.8e-31	108.7	0.1	3.2e-31	107.9	0.1	1.4	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
PFO_beta_C	PF12367.3	gi|408405450|ref|YP_006863433.1|	-	7.9e-10	38.5	0.7	1e-07	31.7	0.5	2.5	1	1	0	1	1	1	1	Pyruvate	ferredoxin	oxidoreductase	beta	subunit	C	terminal
zf-ribbon_3	PF13248.1	gi|408405451|ref|YP_006863434.1|	-	0.08	12.1	1.8	0.21	10.8	0.3	2.0	2	0	0	2	2	2	0	zinc-ribbon	domain
OPA3	PF07047.7	gi|408405452|ref|YP_006863435.1|	-	0.041	13.6	0.0	0.057	13.2	0.0	1.2	1	0	0	1	1	1	0	Optic	atrophy	3	protein	(OPA3)
AsnC_trans_reg	PF01037.16	gi|408405453|ref|YP_006863436.1|	-	3.1e-13	49.2	0.4	3.4e-13	49.0	0.3	1.0	1	0	0	1	1	1	1	AsnC	family
ACT_5	PF13710.1	gi|408405453|ref|YP_006863436.1|	-	0.057	13.2	0.0	5.6	6.8	0.0	2.2	2	0	0	2	2	2	0	ACT	domain
HTH_OrfB_IS605	PF12323.3	gi|408405454|ref|YP_006863437.1|	-	9.8e-13	47.2	1.3	1e-12	47.1	0.0	1.7	2	0	0	2	2	2	1	Helix-turn-helix	domain
OrfB_IS605	PF01385.14	gi|408405454|ref|YP_006863437.1|	-	6.4e-06	25.7	0.4	0.001	18.5	0.0	2.1	2	0	0	2	2	2	2	Probable	transposase
DUF3387	PF11867.3	gi|408405454|ref|YP_006863437.1|	-	0.025	13.5	0.1	0.029	13.3	0.1	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3387)
DPCD	PF14913.1	gi|408405454|ref|YP_006863437.1|	-	0.036	13.1	0.1	0.052	12.6	0.0	1.2	1	0	0	1	1	1	0	DPCD	protein	family
OrfB_IS605	PF01385.14	gi|408405455|ref|YP_006863438.1|	-	2.3e-22	79.5	4.5	3.1e-22	79.0	3.1	1.1	1	0	0	1	1	1	1	Probable	transposase
Treslin_N	PF15292.1	gi|408405455|ref|YP_006863438.1|	-	0.014	13.2	2.2	0.018	12.9	1.5	1.1	1	0	0	1	1	1	0	Treslin	N-terminus
DUF3490	PF11995.3	gi|408405455|ref|YP_006863438.1|	-	0.018	14.6	2.0	0.029	13.9	1.4	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3490)
Chorein_N	PF12624.2	gi|408405455|ref|YP_006863438.1|	-	0.039	13.4	1.3	0.2	11.1	0.1	2.3	1	1	1	2	2	2	0	N-terminal	region	of	Chorein,	a	TM	vesicle-mediated	sorter
DUF4428	PF14471.1	gi|408405456|ref|YP_006863439.1|	-	0.00077	19.1	0.9	0.0018	17.9	0.6	1.6	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4428)
DUF2296	PF10058.4	gi|408405457|ref|YP_006863440.1|	-	0.017	14.8	2.9	0.62	9.8	0.0	2.1	1	1	1	2	2	2	0	Predicted	integral	membrane	metal-binding	protein	(DUF2296)
zf-met2	PF12907.2	gi|408405457|ref|YP_006863440.1|	-	0.021	14.7	0.3	3.5	7.6	0.0	2.1	2	0	0	2	2	2	0	Zinc-binding
zf-C2HC_2	PF13913.1	gi|408405457|ref|YP_006863440.1|	-	0.043	13.4	0.1	0.043	13.4	0.1	2.1	2	0	0	2	2	2	0	zinc-finger	of	a	C2HC-type
zf-trcl	PF13451.1	gi|408405457|ref|YP_006863440.1|	-	0.053	13.1	0.2	3	7.5	0.0	2.1	2	0	0	2	2	2	0	Probable	zinc-binding	domain
zf-RING_3	PF14369.1	gi|408405457|ref|YP_006863440.1|	-	0.09	12.7	0.1	9.6	6.2	0.0	2.1	2	0	0	2	2	2	0	zinc-finger
Cupredoxin_1	PF13473.1	gi|408405458|ref|YP_006863441.1|	-	0.0011	18.8	0.0	0.0013	18.5	0.0	1.2	1	0	0	1	1	1	1	Cupredoxin-like	domain
Copper-bind	PF00127.15	gi|408405458|ref|YP_006863441.1|	-	0.002	18.3	0.0	0.0033	17.6	0.0	1.4	1	0	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
TPX2	PF06886.6	gi|408405459|ref|YP_006863442.1|	-	0.076	13.0	0.3	2.8	8.0	0.0	2.1	2	0	0	2	2	2	0	Targeting	protein	for	Xklp2	(TPX2)
HTH_45	PF14947.1	gi|408405460|ref|YP_006863443.1|	-	1.3e-20	72.9	1.4	1.4e-20	72.8	1.0	1.0	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF4364	PF14277.1	gi|408405460|ref|YP_006863443.1|	-	0.00075	19.1	0.1	0.00083	19.0	0.1	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4364)
HTH_27	PF13463.1	gi|408405460|ref|YP_006863443.1|	-	0.025	14.8	0.0	0.034	14.4	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
DUF4423	PF14394.1	gi|408405460|ref|YP_006863443.1|	-	0.026	14.0	0.0	0.026	14.0	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
HxlR	PF01638.12	gi|408405460|ref|YP_006863443.1|	-	0.037	13.6	0.1	0.042	13.4	0.0	1.3	1	1	0	1	1	1	0	HxlR-like	helix-turn-helix
FaeA	PF04703.7	gi|408405460|ref|YP_006863443.1|	-	0.051	13.7	0.1	0.078	13.1	0.0	1.3	1	0	0	1	1	1	0	FaeA-like	protein
DUF2250	PF10007.4	gi|408405460|ref|YP_006863443.1|	-	0.063	13.1	0.2	0.086	12.7	0.1	1.3	1	1	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
Response_reg	PF00072.19	gi|408405461|ref|YP_006863444.1|	-	6.3e-05	22.9	0.3	6.9e-05	22.8	0.2	1.1	1	0	0	1	1	1	1	Response	regulator	receiver	domain
HATPase_c	PF02518.21	gi|408405462|ref|YP_006863445.1|	-	7.5e-31	106.1	0.7	3.4e-30	104.0	0.1	2.1	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.20	gi|408405462|ref|YP_006863445.1|	-	4e-12	45.9	0.6	1.2e-11	44.4	0.4	1.9	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_2	PF13581.1	gi|408405462|ref|YP_006863445.1|	-	6.6e-05	22.6	0.0	0.00017	21.3	0.0	1.7	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
PLDc_2	PF13091.1	gi|408405462|ref|YP_006863445.1|	-	0.00017	21.3	0.1	0.00061	19.5	0.0	1.9	1	1	0	1	1	1	1	PLD-like	domain
HATPase_c_5	PF14501.1	gi|408405462|ref|YP_006863445.1|	-	0.00037	20.1	0.0	0.0011	18.6	0.0	1.8	2	0	0	2	2	2	1	GHKL	domain
HATPase_c_3	PF13589.1	gi|408405462|ref|YP_006863445.1|	-	0.0026	17.4	0.0	0.006	16.2	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
Copper-bind	PF00127.15	gi|408405463|ref|YP_006863446.1|	-	1.6e-10	41.0	0.0	2.9e-10	40.2	0.0	1.4	1	0	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
Copine	PF07002.11	gi|408405463|ref|YP_006863446.1|	-	0.042	13.5	0.1	0.073	12.8	0.0	1.3	1	0	0	1	1	1	0	Copine
RNA_pol_L_2	PF13656.1	gi|408405467|ref|YP_006863450.1|	-	0.018	14.4	0.1	0.92	8.9	0.0	2.1	1	1	1	2	2	2	0	RNA	polymerase	Rpb3/Rpb11	dimerisation	domain
UTRA	PF07702.8	gi|408405467|ref|YP_006863450.1|	-	0.022	14.3	0.0	0.025	14.1	0.0	1.1	1	0	0	1	1	1	0	UTRA	domain
Response_reg	PF00072.19	gi|408405468|ref|YP_006863451.1|	-	1.2e-14	54.2	0.0	1.4e-14	54.0	0.0	1.1	1	0	0	1	1	1	1	Response	regulator	receiver	domain
DUF4149	PF13664.1	gi|408405469|ref|YP_006863452.1|	-	1.8	8.7	16.3	0.87	9.6	2.8	3.3	3	1	0	3	3	3	0	Domain	of	unknown	function	(DUF4149)
PSI_PsaJ	PF01701.13	gi|408405469|ref|YP_006863452.1|	-	1.9	8.3	4.9	6	6.7	0.2	2.9	2	0	0	2	2	2	0	Photosystem	I	reaction	centre	subunit	IX	/	PsaJ
DUF2721	PF11026.3	gi|408405469|ref|YP_006863452.1|	-	2.2	7.9	11.1	4.5	6.9	0.7	3.2	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF2721)
ABC_tran	PF00005.22	gi|408405470|ref|YP_006863453.1|	-	2.1e-23	83.1	0.0	3.6e-23	82.3	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|408405470|ref|YP_006863453.1|	-	6.5e-14	52.5	0.2	4.7e-12	46.4	0.1	2.1	1	1	0	1	1	1	1	AAA	domain
SMC_N	PF02463.14	gi|408405470|ref|YP_006863453.1|	-	8.1e-11	41.5	0.5	0.0002	20.6	0.0	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_13	PF13166.1	gi|408405470|ref|YP_006863453.1|	-	5e-06	25.2	0.0	0.036	12.5	0.0	2.1	2	0	0	2	2	2	2	AAA	domain
AAA_29	PF13555.1	gi|408405470|ref|YP_006863453.1|	-	2.5e-05	23.6	0.1	5.2e-05	22.6	0.1	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.1	gi|408405470|ref|YP_006863453.1|	-	8.1e-05	23.0	0.3	0.00011	22.5	0.2	1.6	1	1	0	1	1	1	1	AAA	domain
AAA_25	PF13481.1	gi|408405470|ref|YP_006863453.1|	-	0.00015	21.1	0.0	0.0085	15.5	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
DUF258	PF03193.11	gi|408405470|ref|YP_006863453.1|	-	0.00017	20.8	0.1	0.00037	19.7	0.1	1.5	2	0	0	2	2	1	1	Protein	of	unknown	function,	DUF258
AAA_17	PF13207.1	gi|408405470|ref|YP_006863453.1|	-	0.00025	21.8	0.1	0.00061	20.6	0.0	2.0	1	1	0	1	1	1	1	AAA	domain
AAA_33	PF13671.1	gi|408405470|ref|YP_006863453.1|	-	0.00057	19.7	0.0	0.00093	19.0	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_18	PF13238.1	gi|408405470|ref|YP_006863453.1|	-	0.00064	20.0	0.4	0.32	11.2	0.0	2.7	2	1	1	3	3	2	1	AAA	domain
AAA_22	PF13401.1	gi|408405470|ref|YP_006863453.1|	-	0.0032	17.6	0.1	0.35	11.0	0.0	2.4	2	1	0	2	2	2	1	AAA	domain
MutS_V	PF00488.16	gi|408405470|ref|YP_006863453.1|	-	0.0041	16.5	0.2	1.7	8.0	0.0	2.1	2	0	0	2	2	2	2	MutS	domain	V
Arch_ATPase	PF01637.13	gi|408405470|ref|YP_006863453.1|	-	0.0041	16.8	0.7	0.35	10.5	0.0	2.2	2	1	0	2	2	2	1	Archaeal	ATPase
AAA_10	PF12846.2	gi|408405470|ref|YP_006863453.1|	-	0.0068	15.8	0.3	0.035	13.5	0.0	2.1	2	1	1	3	3	3	1	AAA-like	domain
AAA_14	PF13173.1	gi|408405470|ref|YP_006863453.1|	-	0.0096	15.8	0.0	0.12	12.3	0.0	2.5	1	1	0	1	1	1	1	AAA	domain
MMR_HSR1	PF01926.18	gi|408405470|ref|YP_006863453.1|	-	0.011	15.7	0.4	0.018	14.9	0.3	1.8	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
AAA_16	PF13191.1	gi|408405470|ref|YP_006863453.1|	-	0.011	15.7	0.0	0.025	14.5	0.0	1.6	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_15	PF13175.1	gi|408405470|ref|YP_006863453.1|	-	0.014	14.4	0.0	3.7	6.4	0.0	2.2	1	1	0	2	2	2	0	AAA	ATPase	domain
ANF_receptor	PF01094.23	gi|408405470|ref|YP_006863453.1|	-	0.015	14.1	0.0	0.71	8.6	0.0	2.2	2	0	0	2	2	2	0	Receptor	family	ligand	binding	region
Dynamin_N	PF00350.18	gi|408405470|ref|YP_006863453.1|	-	0.017	14.9	0.1	0.039	13.7	0.1	1.8	1	1	0	1	1	1	0	Dynamin	family
ABC_ATPase	PF09818.4	gi|408405470|ref|YP_006863453.1|	-	0.025	13.1	0.1	0.041	12.4	0.0	1.3	1	0	0	1	1	1	0	Predicted	ATPase	of	the	ABC	class
DUF87	PF01935.12	gi|408405470|ref|YP_006863453.1|	-	0.028	14.2	0.1	5.7	6.6	0.0	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	DUF87
T2SE	PF00437.15	gi|408405470|ref|YP_006863453.1|	-	0.029	13.2	0.0	0.054	12.3	0.0	1.4	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
AAA	PF00004.24	gi|408405470|ref|YP_006863453.1|	-	0.032	14.4	0.2	0.17	12.1	0.1	2.1	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_19	PF13245.1	gi|408405470|ref|YP_006863453.1|	-	0.041	13.6	0.4	0.89	9.3	0.0	2.3	2	0	0	2	2	2	0	Part	of	AAA	domain
NB-ARC	PF00931.17	gi|408405470|ref|YP_006863453.1|	-	0.057	12.2	0.1	0.11	11.2	0.1	1.4	1	0	0	1	1	1	0	NB-ARC	domain
AIG1	PF04548.11	gi|408405470|ref|YP_006863453.1|	-	0.073	12.1	0.0	0.19	10.7	0.0	1.6	1	0	0	1	1	1	0	AIG1	family
IstB_IS21	PF01695.12	gi|408405470|ref|YP_006863453.1|	-	0.14	11.6	0.1	0.3	10.4	0.0	1.5	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
Rhodanese	PF00581.15	gi|408405471|ref|YP_006863454.1|	-	0.094	13.0	0.0	0.11	12.9	0.0	1.0	1	0	0	1	1	1	0	Rhodanese-like	domain
Chlor_dismutase	PF06778.7	gi|408405472|ref|YP_006863455.1|	-	2e-55	187.4	1.1	2.5e-55	187.1	0.7	1.0	1	0	0	1	1	1	1	Chlorite	dismutase
DUF1802	PF08819.6	gi|408405473|ref|YP_006863456.1|	-	1.4e-56	190.8	0.1	1.6e-56	190.7	0.0	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1802)
Aldo_ket_red	PF00248.16	gi|408405474|ref|YP_006863457.1|	-	6.7e-52	176.0	0.1	7.5e-52	175.8	0.0	1.0	1	0	0	1	1	1	1	Aldo/keto	reductase	family
Hemerythrin	PF01814.18	gi|408405475|ref|YP_006863458.1|	-	3.6e-11	43.3	2.3	3.6e-11	43.3	1.6	1.5	2	0	0	2	2	2	1	Hemerythrin	HHE	cation	binding	domain
HTH_AsnC-type	PF13404.1	gi|408405476|ref|YP_006863459.1|	-	1.9e-10	40.0	0.0	4.9e-07	29.1	0.0	2.7	2	0	0	2	2	2	2	AsnC-type	helix-turn-helix	domain
AsnC_trans_reg	PF01037.16	gi|408405476|ref|YP_006863459.1|	-	9e-07	28.5	0.0	0.032	13.9	0.0	3.3	2	1	0	2	2	2	2	AsnC	family
HTH_24	PF13412.1	gi|408405476|ref|YP_006863459.1|	-	3.2e-05	23.2	1.2	3.2e-05	23.2	0.8	2.7	2	1	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
Sigma70_r4	PF04545.11	gi|408405476|ref|YP_006863459.1|	-	0.00066	18.9	0.4	0.52	9.6	0.0	3.0	3	0	0	3	3	3	2	Sigma-70,	region	4
HTH_11	PF08279.7	gi|408405476|ref|YP_006863459.1|	-	0.0088	15.6	0.2	0.018	14.7	0.1	1.5	1	0	0	1	1	1	1	HTH	domain
HTH_20	PF12840.2	gi|408405476|ref|YP_006863459.1|	-	0.018	14.8	0.0	0.039	13.7	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF2250	PF10007.4	gi|408405476|ref|YP_006863459.1|	-	0.037	13.9	0.0	0.34	10.8	0.0	2.5	2	1	0	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
MarR_2	PF12802.2	gi|408405476|ref|YP_006863459.1|	-	0.097	12.3	0.1	0.21	11.2	0.0	1.5	1	0	0	1	1	1	0	MarR	family
ECF-ribofla_trS	PF07155.7	gi|408405478|ref|YP_006863461.1|	-	0.063	13.0	2.0	0.069	12.8	1.4	1.1	1	0	0	1	1	1	0	ECF-type	riboflavin	transporter,	S	component
DUF3487	PF11990.3	gi|408405478|ref|YP_006863461.1|	-	0.11	11.9	0.3	0.12	11.7	0.2	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3487)
DZR	PF12773.2	gi|408405479|ref|YP_006863462.1|	-	0.00024	20.8	8.8	0.0011	18.6	6.2	1.8	1	1	1	2	2	2	2	Double	zinc	ribbon
zf-RING_3	PF14369.1	gi|408405479|ref|YP_006863462.1|	-	0.17	11.8	0.0	0.17	11.8	0.0	3.4	3	1	0	3	3	3	0	zinc-finger
DnaJ_CXXCXGXG	PF00684.14	gi|408405479|ref|YP_006863462.1|	-	0.33	11.0	12.5	8.5	6.5	8.7	2.3	1	1	0	1	1	1	0	DnaJ	central	domain
CpXC	PF14353.1	gi|408405479|ref|YP_006863462.1|	-	0.39	10.6	2.9	1.8	8.5	0.0	2.3	2	1	0	2	2	2	0	CpXC	protein
FYVE	PF01363.16	gi|408405479|ref|YP_006863462.1|	-	0.64	9.9	9.8	14	5.6	6.8	2.4	1	1	0	1	1	1	0	FYVE	zinc	finger
NMD3	PF04981.8	gi|408405479|ref|YP_006863462.1|	-	0.99	8.4	5.4	0.15	11.1	0.8	1.6	1	1	1	2	2	2	0	NMD3	family
HypA	PF01155.14	gi|408405479|ref|YP_006863462.1|	-	1.2	8.8	7.2	11	5.7	3.9	2.1	1	1	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
zf-C2H2_7	PF15269.1	gi|408405479|ref|YP_006863462.1|	-	1.3	8.8	5.8	0.9	9.4	0.2	2.4	2	0	0	2	2	2	0	Zinc-finger
zf-ribbon_3	PF13248.1	gi|408405479|ref|YP_006863462.1|	-	1.6	8.0	14.1	2.9	7.2	1.9	2.6	2	2	0	2	2	2	0	zinc-ribbon	domain
XPA_N	PF01286.13	gi|408405479|ref|YP_006863462.1|	-	2.3	7.9	15.0	0.32	10.7	1.9	3.4	3	1	1	4	4	4	0	XPA	protein	N-terminal
Ribosomal_L37e	PF01907.14	gi|408405479|ref|YP_006863462.1|	-	3.9	7.3	15.5	1.7	8.4	1.0	2.4	1	1	1	2	2	2	0	Ribosomal	protein	L37e
zf-RING_5	PF14634.1	gi|408405479|ref|YP_006863462.1|	-	5.9	6.7	10.7	0.8	9.4	1.5	2.8	3	0	0	3	3	3	0	zinc-RING	finger	domain
RNHCP	PF12647.2	gi|408405479|ref|YP_006863462.1|	-	8.9	6.2	7.5	5.3	6.9	2.1	2.1	1	1	1	2	2	2	0	RNHCP	domain
Response_reg	PF00072.19	gi|408405480|ref|YP_006863463.1|	-	1.1e-20	73.6	0.2	1.3e-20	73.4	0.1	1.1	1	0	0	1	1	1	1	Response	regulator	receiver	domain
DUF43	PF01861.11	gi|408405480|ref|YP_006863463.1|	-	0.065	12.2	0.1	0.11	11.4	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	DUF43
MEDS	PF14417.1	gi|408405481|ref|YP_006863464.1|	-	1.3e-06	27.5	0.2	1.6e-06	27.2	0.1	1.1	1	0	0	1	1	1	1	MEDS:	MEthanogen/methylotroph,	DcmR	Sensory	domain
KaiC	PF06745.8	gi|408405481|ref|YP_006863464.1|	-	0.00077	18.6	0.0	0.00086	18.4	0.0	1.1	1	0	0	1	1	1	1	KaiC
NTP_transf_5	PF14907.1	gi|408405481|ref|YP_006863464.1|	-	0.034	13.4	0.1	0.043	13.1	0.0	1.2	1	0	0	1	1	1	0	Uncharacterised	nucleotidyltransferase
Response_reg	PF00072.19	gi|408405482|ref|YP_006863465.1|	-	2.9e-11	43.3	0.1	3.2e-11	43.2	0.1	1.0	1	0	0	1	1	1	1	Response	regulator	receiver	domain
Cpn60_TCP1	PF00118.19	gi|408405483|ref|YP_006863466.1|	-	2.3e-164	547.6	13.1	2.6e-164	547.4	9.1	1.0	1	0	0	1	1	1	1	TCP-1/cpn60	chaperonin	family
HTH_20	PF12840.2	gi|408405484|ref|YP_006863467.1|	-	2.7e-16	59.1	0.1	2.2e-13	49.7	0.0	2.6	2	1	0	2	2	2	2	Helix-turn-helix	domain
HTH_5	PF01022.15	gi|408405484|ref|YP_006863467.1|	-	8.4e-13	47.7	0.3	9e-11	41.2	0.0	2.6	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
HTH_24	PF13412.1	gi|408405484|ref|YP_006863467.1|	-	3.9e-07	29.3	0.3	1.4e-05	24.3	0.1	2.5	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
ArsR	PF09824.4	gi|408405484|ref|YP_006863467.1|	-	5.6e-05	22.5	0.1	0.00026	20.3	0.0	1.9	2	1	0	2	2	2	1	ArsR	transcriptional	regulator
TrmB	PF01978.14	gi|408405484|ref|YP_006863467.1|	-	9.6e-05	22.0	0.8	0.0089	15.7	0.0	2.4	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
PadR	PF03551.9	gi|408405484|ref|YP_006863467.1|	-	0.00011	21.8	1.5	0.00061	19.4	0.1	2.8	2	2	1	3	3	3	1	Transcriptional	regulator	PadR-like	family
MarR_2	PF12802.2	gi|408405484|ref|YP_006863467.1|	-	0.00044	19.8	0.0	0.014	15.0	0.0	2.3	2	0	0	2	2	2	1	MarR	family
MarR	PF01047.17	gi|408405484|ref|YP_006863467.1|	-	0.00075	19.1	0.1	0.0041	16.7	0.0	2.2	2	0	0	2	2	2	1	MarR	family
HTH_11	PF08279.7	gi|408405484|ref|YP_006863467.1|	-	0.00093	18.7	0.1	0.0032	17.0	0.1	2.0	1	0	0	1	1	1	1	HTH	domain
STAT_int	PF02865.12	gi|408405484|ref|YP_006863467.1|	-	0.0046	16.9	0.5	0.02	14.8	0.1	2.1	1	1	1	2	2	2	1	STAT	protein,	protein	interaction	domain
HTH_Crp_2	PF13545.1	gi|408405484|ref|YP_006863467.1|	-	0.01	15.5	0.0	0.026	14.3	0.0	1.7	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_29	PF13551.1	gi|408405484|ref|YP_006863467.1|	-	0.013	15.6	0.1	0.041	14.0	0.0	1.8	2	0	0	2	2	2	0	Winged	helix-turn	helix
HTH_34	PF13601.1	gi|408405484|ref|YP_006863467.1|	-	0.048	13.6	0.0	0.15	12.1	0.0	1.8	2	0	0	2	2	1	0	Winged	helix	DNA-binding	domain
STAT_alpha	PF01017.15	gi|408405484|ref|YP_006863467.1|	-	0.069	12.8	0.8	0.12	12.0	0.4	1.7	1	1	0	1	1	1	0	STAT	protein,	all-alpha	domain
Reo_sigmaC	PF04582.7	gi|408405484|ref|YP_006863467.1|	-	0.071	12.2	1.1	0.097	11.8	0.8	1.1	1	0	0	1	1	1	0	Reovirus	sigma	C	capsid	protein
HTH_CodY	PF08222.6	gi|408405484|ref|YP_006863467.1|	-	0.098	12.0	0.0	0.28	10.5	0.0	1.8	2	0	0	2	2	2	0	CodY	helix-turn-helix	domain
LexA_DNA_bind	PF01726.11	gi|408405484|ref|YP_006863467.1|	-	0.12	11.9	0.0	0.54	9.8	0.0	2.1	2	0	0	2	2	1	0	LexA	DNA	binding	domain
HTH_38	PF13936.1	gi|408405484|ref|YP_006863467.1|	-	0.15	11.6	1.3	0.81	9.2	0.0	2.6	3	1	0	3	3	3	0	Helix-turn-helix	domain
Syntaxin-6_N	PF09177.6	gi|408405484|ref|YP_006863467.1|	-	0.15	12.4	2.4	2.4	8.5	0.3	2.4	1	1	1	2	2	2	0	Syntaxin	6,	N-terminal
BMFP	PF04380.8	gi|408405484|ref|YP_006863467.1|	-	0.17	12.0	1.8	15	5.7	0.1	2.8	1	1	2	3	3	3	0	Membrane	fusogenic	activity
DUF4140	PF13600.1	gi|408405484|ref|YP_006863467.1|	-	0.32	11.4	3.0	1.1	9.7	0.2	2.2	2	0	0	2	2	2	0	N-terminal	domain	of	unknown	function	(DUF4140)
HTH_AsnC-type	PF13404.1	gi|408405484|ref|YP_006863467.1|	-	0.35	10.4	3.0	2.7	7.6	0.2	3.3	2	2	1	3	3	3	0	AsnC-type	helix-turn-helix	domain
KaiC	PF06745.8	gi|408405485|ref|YP_006863468.1|	-	0.0052	15.9	0.0	0.0054	15.8	0.0	1.0	1	0	0	1	1	1	1	KaiC
ABM	PF03992.11	gi|408405486|ref|YP_006863469.1|	-	1e-06	28.6	0.0	1.4e-06	28.2	0.0	1.2	1	0	0	1	1	1	1	Antibiotic	biosynthesis	monooxygenase
Cu-oxidase_3	PF07732.10	gi|408405488|ref|YP_006863471.1|	-	4.4e-25	87.6	6.5	7.4e-23	80.5	0.1	3.8	3	1	0	3	3	3	2	Multicopper	oxidase
Cu-oxidase_2	PF07731.9	gi|408405488|ref|YP_006863471.1|	-	7.2e-16	57.9	4.6	2.4e-06	27.1	0.1	3.6	3	0	0	3	3	3	3	Multicopper	oxidase
Copper-bind	PF00127.15	gi|408405488|ref|YP_006863471.1|	-	7.5e-10	38.9	2.7	1.4e-08	34.8	0.4	3.4	2	1	0	2	2	2	1	Copper	binding	proteins,	plastocyanin/azurin	family
Cupredoxin_1	PF13473.1	gi|408405488|ref|YP_006863471.1|	-	2.5e-09	36.9	0.0	4.7e-08	32.8	0.0	2.8	3	0	0	3	3	3	1	Cupredoxin-like	domain
Cu-oxidase	PF00394.17	gi|408405488|ref|YP_006863471.1|	-	0.012	15.5	0.0	0.29	11.0	0.0	2.5	2	0	0	2	2	2	0	Multicopper	oxidase
DUF488	PF04343.8	gi|408405489|ref|YP_006863472.1|	-	3.1e-31	108.2	0.1	3.5e-31	108.1	0.1	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF488
Fer4	PF00037.22	gi|408405490|ref|YP_006863473.1|	-	3e-10	39.2	11.9	2.3e-06	26.9	0.9	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.2	gi|408405490|ref|YP_006863473.1|	-	3.4e-10	40.1	26.8	1.7e-06	28.3	6.6	2.3	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|408405490|ref|YP_006863473.1|	-	1.3e-08	34.9	6.0	3.7e-08	33.5	4.2	1.7	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_8	PF13183.1	gi|408405490|ref|YP_006863473.1|	-	1.2e-07	31.6	23.0	4.2e-05	23.4	5.6	2.1	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_6	PF12837.2	gi|408405490|ref|YP_006863473.1|	-	1.7e-07	30.8	12.5	0.00071	19.3	2.7	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_10	PF13237.1	gi|408405490|ref|YP_006863473.1|	-	3.1e-07	30.0	19.3	9.4e-06	25.3	6.2	2.2	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.2	gi|408405490|ref|YP_006863473.1|	-	3.7e-07	29.6	10.2	0.0028	17.4	1.2	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_15	PF13459.1	gi|408405490|ref|YP_006863473.1|	-	3.9e-07	30.5	5.0	0.00085	19.8	0.2	2.6	3	0	0	3	3	2	2	4Fe-4S	single	cluster	domain
Fer4_16	PF13484.1	gi|408405490|ref|YP_006863473.1|	-	7.4e-07	29.8	4.1	0.00065	20.3	0.4	2.4	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_13	PF13370.1	gi|408405490|ref|YP_006863473.1|	-	2.7e-06	27.6	5.2	0.0035	17.6	0.2	2.7	3	0	0	3	3	2	2	4Fe-4S	single	cluster	domain
Fer4_4	PF12800.2	gi|408405490|ref|YP_006863473.1|	-	8.1e-06	25.7	5.6	0.026	14.8	0.9	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.1	gi|408405490|ref|YP_006863473.1|	-	1.1e-05	25.2	8.2	0.00047	19.9	5.7	2.2	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_17	PF13534.1	gi|408405490|ref|YP_006863473.1|	-	1.2e-05	25.5	11.5	0.00029	21.1	4.7	2.0	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_18	PF13746.1	gi|408405490|ref|YP_006863473.1|	-	3.2e-05	24.2	8.2	0.00016	22.0	4.4	2.3	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_3	PF12798.2	gi|408405490|ref|YP_006863473.1|	-	0.03	14.8	15.4	0.13	12.9	0.9	2.3	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_11	PF13247.1	gi|408405490|ref|YP_006863473.1|	-	0.033	14.0	4.1	2.1	8.2	0.1	2.2	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
SIMPL	PF04402.9	gi|408405492|ref|YP_006863475.1|	-	1.5e-15	57.6	0.1	1.9e-15	57.2	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF541)
SIMPL	PF04402.9	gi|408405493|ref|YP_006863476.1|	-	4e-10	39.9	0.1	6.8e-10	39.1	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF541)
MarR	PF01047.17	gi|408405495|ref|YP_006863478.1|	-	3.4e-14	52.2	0.0	6.6e-14	51.3	0.0	1.5	1	0	0	1	1	1	1	MarR	family
MarR_2	PF12802.2	gi|408405495|ref|YP_006863478.1|	-	6.1e-11	41.8	0.1	1.4e-10	40.7	0.1	1.6	2	0	0	2	2	2	1	MarR	family
HTH_27	PF13463.1	gi|408405495|ref|YP_006863478.1|	-	4.8e-06	26.8	0.1	1.1e-05	25.6	0.0	1.7	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_24	PF13412.1	gi|408405495|ref|YP_006863478.1|	-	5.4e-06	25.6	0.0	8.3e-05	21.9	0.0	2.4	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_IclR	PF09339.5	gi|408405495|ref|YP_006863478.1|	-	0.0007	19.1	0.1	0.0018	17.8	0.0	1.7	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_34	PF13601.1	gi|408405495|ref|YP_006863478.1|	-	0.0014	18.6	0.0	0.0027	17.7	0.0	1.4	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
TrmB	PF01978.14	gi|408405495|ref|YP_006863478.1|	-	0.0081	15.8	0.0	0.028	14.1	0.0	1.8	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
CK2S	PF15011.1	gi|408405495|ref|YP_006863478.1|	-	0.019	14.7	0.0	0.032	14.0	0.0	1.4	1	0	0	1	1	1	0	Casein	Kinase	2	substrate
HTH_36	PF13730.1	gi|408405495|ref|YP_006863478.1|	-	0.11	12.6	0.0	0.25	11.4	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF2379	PF09543.5	gi|408405497|ref|YP_006863480.1|	-	0.011	15.6	2.2	0.011	15.6	1.5	2.4	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2379)
DUF4130	PF13566.1	gi|408405497|ref|YP_006863480.1|	-	0.046	13.2	1.2	0.1	12.1	0.7	1.6	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4130
DUF1664	PF07889.7	gi|408405497|ref|YP_006863480.1|	-	0.1	12.3	7.6	0.079	12.7	2.2	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1664)
Apolipoprotein	PF01442.13	gi|408405497|ref|YP_006863480.1|	-	0.24	10.8	14.7	2.8	7.4	10.0	2.0	1	1	0	1	1	1	0	Apolipoprotein	A1/A4/E	domain
Laminin_II	PF06009.7	gi|408405497|ref|YP_006863480.1|	-	0.36	10.5	14.5	1	9.0	8.4	2.0	1	1	1	2	2	2	0	Laminin	Domain	II
ISG65-75	PF11727.3	gi|408405497|ref|YP_006863480.1|	-	1.3	8.0	15.5	2	7.3	10.6	1.5	1	1	0	1	1	1	0	Invariant	surface	glycoprotein
HTH_12	PF08461.5	gi|408405497|ref|YP_006863480.1|	-	1.4	8.7	6.7	1.5	8.6	2.6	2.3	2	1	1	3	3	3	0	Ribonuclease	R	winged-helix	domain
LacI	PF00356.16	gi|408405497|ref|YP_006863480.1|	-	1.4	8.6	6.0	6.8	6.3	0.8	3.4	2	2	1	3	3	3	0	Bacterial	regulatory	proteins,	lacI	family
Fib_alpha	PF08702.5	gi|408405497|ref|YP_006863480.1|	-	1.9	8.6	5.6	7	6.7	0.2	2.5	1	1	1	2	2	2	0	Fibrinogen	alpha/beta	chain	family
Apo-CIII	PF05778.7	gi|408405497|ref|YP_006863480.1|	-	4.6	6.7	9.2	2.2	7.7	0.7	3.4	1	1	3	4	4	4	0	Apolipoprotein	CIII	(Apo-CIII)
DUF4194	PF13835.1	gi|408405497|ref|YP_006863480.1|	-	5.1	6.5	8.8	6.7	6.1	0.8	2.6	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF4194)
DUF948	PF06103.6	gi|408405497|ref|YP_006863480.1|	-	7.3	6.5	7.4	9.5	6.1	0.8	3.0	1	1	2	3	3	3	0	Bacterial	protein	of	unknown	function	(DUF948)
DUF2203	PF09969.4	gi|408405497|ref|YP_006863480.1|	-	9.5	6.4	11.3	3.5	7.8	2.1	2.1	1	1	1	2	2	2	0	Uncharacterized	conserved	protein	(DUF2203)
YtkA	PF13115.1	gi|408405499|ref|YP_006863482.1|	-	0.029	14.7	0.0	1.9	8.9	0.0	2.7	3	0	0	3	3	3	0	YtkA-like
FixG_C	PF11614.3	gi|408405499|ref|YP_006863482.1|	-	0.031	14.3	0.0	0.072	13.1	0.0	1.5	2	0	0	2	2	2	0	IG-like	fold	at	C-terminal	of	FixG,	putative	oxidoreductase
PBP-Tp47_a	PF14889.1	gi|408405499|ref|YP_006863482.1|	-	0.1	11.9	0.0	0.15	11.3	0.0	1.2	1	0	0	1	1	1	0	Penicillin-binding	protein	Tp47	domain	a
Methyltransf_25	PF13649.1	gi|408405501|ref|YP_006863484.1|	-	1.4e-07	31.8	0.1	2.2e-07	31.1	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|408405501|ref|YP_006863484.1|	-	1.8e-06	27.6	0.0	2.4e-06	27.2	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
CheR	PF01739.13	gi|408405501|ref|YP_006863484.1|	-	7.9e-06	25.2	1.1	6.3e-05	22.3	0.4	2.0	1	1	1	2	2	2	1	CheR	methyltransferase,	SAM	binding	domain
Methyltransf_23	PF13489.1	gi|408405501|ref|YP_006863484.1|	-	7.7e-05	22.4	0.0	0.00011	21.9	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|408405501|ref|YP_006863484.1|	-	0.0002	21.8	0.0	0.00037	21.0	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_32	PF13679.1	gi|408405501|ref|YP_006863484.1|	-	0.00059	19.5	0.1	0.00095	18.8	0.1	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|408405501|ref|YP_006863484.1|	-	0.0016	18.8	0.2	0.0034	17.8	0.1	1.6	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.7	gi|408405501|ref|YP_006863484.1|	-	0.0023	18.4	0.0	0.0041	17.5	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
OSR1_C	PF12202.3	gi|408405501|ref|YP_006863484.1|	-	0.027	14.1	0.1	0.064	12.9	0.1	1.6	1	0	0	1	1	1	0	Oxidative-stress-responsive	kinase	1	C	terminal
HTH_20	PF12840.2	gi|408405502|ref|YP_006863485.1|	-	0.005	16.6	0.1	0.0097	15.6	0.1	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_27	PF13463.1	gi|408405502|ref|YP_006863485.1|	-	0.016	15.5	0.0	0.061	13.6	0.0	2.0	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
HTH_11	PF08279.7	gi|408405502|ref|YP_006863485.1|	-	0.084	12.5	2.0	0.35	10.5	0.0	2.8	3	0	0	3	3	3	0	HTH	domain
DUF1814	PF08843.6	gi|408405503|ref|YP_006863486.1|	-	3.8e-05	23.6	0.1	8.4e-05	22.4	0.1	1.6	1	1	0	1	1	1	1	Nucleotidyl	transferase	of	unknown	function	(DUF1814)
Tubulin_2	PF13809.1	gi|408405503|ref|YP_006863486.1|	-	0.039	12.9	0.4	0.19	10.5	0.1	1.9	2	0	0	2	2	2	0	Tubulin	like
AAA_4	PF04326.9	gi|408405504|ref|YP_006863487.1|	-	1.8e-18	66.8	0.7	4.2e-18	65.6	0.1	1.9	2	0	0	2	2	2	1	Divergent	AAA	domain
HEPN	PF05168.9	gi|408405505|ref|YP_006863488.1|	-	2.6e-05	24.0	1.7	0.00096	19.0	0.4	2.7	2	0	0	2	2	2	2	HEPN	domain
PDDEXK_1	PF12705.2	gi|408405505|ref|YP_006863488.1|	-	0.11	11.8	0.0	0.17	11.2	0.0	1.3	1	0	0	1	1	1	0	PD-(D/E)XK	nuclease	superfamily
N6_Mtase	PF02384.11	gi|408405506|ref|YP_006863489.1|	-	2.6e-123	411.0	0.0	3.5e-123	410.6	0.0	1.1	1	0	0	1	1	1	1	N-6	DNA	Methylase
HsdM_N	PF12161.3	gi|408405506|ref|YP_006863489.1|	-	4.7e-29	101.5	2.6	4.7e-29	101.5	1.8	2.3	2	1	0	2	2	2	1	HsdM	N-terminal	domain
Methyltransf_26	PF13659.1	gi|408405506|ref|YP_006863489.1|	-	4.5e-11	42.8	0.0	9.2e-11	41.8	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
UPF0020	PF01170.13	gi|408405506|ref|YP_006863489.1|	-	2.5e-05	23.9	0.0	5.3e-05	22.8	0.0	1.4	1	0	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
MTS	PF05175.9	gi|408405506|ref|YP_006863489.1|	-	0.00012	21.4	0.0	0.00024	20.5	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_15	PF09445.5	gi|408405506|ref|YP_006863489.1|	-	0.048	13.2	0.0	0.084	12.4	0.0	1.4	1	0	0	1	1	1	0	RNA	cap	guanine-N2	methyltransferase
Seryl_tRNA_N	PF02403.17	gi|408405506|ref|YP_006863489.1|	-	0.077	13.0	6.9	2.4	8.1	0.1	2.7	3	0	0	3	3	3	0	Seryl-tRNA	synthetase	N-terminal	domain
TipAS	PF07739.8	gi|408405506|ref|YP_006863489.1|	-	0.65	10.3	5.2	0.43	10.9	0.4	2.9	4	0	0	4	4	4	0	TipAS	antibiotic-recognition	domain
Methylase_S	PF01420.14	gi|408405507|ref|YP_006863490.1|	-	3.6e-51	173.4	0.7	2.5e-34	118.6	0.4	2.1	2	0	0	2	2	2	2	Type	I	restriction	modification	DNA	specificity	domain
DUF3387	PF11867.3	gi|408405508|ref|YP_006863491.1|	-	6e-130	433.0	17.3	6e-130	433.0	12.0	1.6	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF3387)
HSDR_N	PF04313.9	gi|408405508|ref|YP_006863491.1|	-	4.6e-44	150.4	0.2	4.6e-44	150.4	0.1	2.9	2	1	1	3	3	3	1	Type	I	restriction	enzyme	R	protein	N	terminus	(HSDR_N)
ResIII	PF04851.10	gi|408405508|ref|YP_006863491.1|	-	7.8e-20	71.4	1.5	1.9e-19	70.2	0.0	2.3	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
HTH_38	PF13936.1	gi|408405510|ref|YP_006863493.1|	-	0.003	17.0	0.2	0.022	14.3	0.0	2.4	1	1	1	2	2	2	1	Helix-turn-helix	domain
HTH_23	PF13384.1	gi|408405510|ref|YP_006863493.1|	-	0.005	16.4	0.1	0.015	14.9	0.0	1.9	1	1	0	1	1	1	1	Homeodomain-like	domain
ATP12	PF07542.6	gi|408405510|ref|YP_006863493.1|	-	0.036	13.9	0.2	0.061	13.2	0.2	1.5	1	0	0	1	1	1	0	ATP12	chaperone	protein
HTH_11	PF08279.7	gi|408405510|ref|YP_006863493.1|	-	0.072	12.7	0.0	0.21	11.2	0.0	1.8	1	0	0	1	1	1	0	HTH	domain
DUF4349	PF14257.1	gi|408405510|ref|YP_006863493.1|	-	0.28	10.3	3.9	0.58	9.3	2.7	1.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4349)
MarR	PF01047.17	gi|408405511|ref|YP_006863494.1|	-	0.0013	18.3	0.0	0.0032	17.1	0.0	1.7	1	0	0	1	1	1	1	MarR	family
HTH_27	PF13463.1	gi|408405511|ref|YP_006863494.1|	-	0.012	15.9	0.1	0.069	13.4	0.0	2.3	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
MarR_2	PF12802.2	gi|408405511|ref|YP_006863494.1|	-	0.058	13.0	0.0	0.13	11.9	0.0	1.6	1	0	0	1	1	1	0	MarR	family
DUF2399	PF09664.5	gi|408405513|ref|YP_006863496.1|	-	0.14	11.9	0.0	0.53	10.1	0.0	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	C-terminus	(DUF2399)
Phage_integrase	PF00589.17	gi|408405514|ref|YP_006863497.1|	-	1.8e-09	37.4	0.0	1.4e-08	34.6	0.0	2.3	2	1	0	2	2	2	1	Phage	integrase	family
DZR	PF12773.2	gi|408405514|ref|YP_006863497.1|	-	3.6e-05	23.4	0.8	8e-05	22.3	0.6	1.5	1	0	0	1	1	1	1	Double	zinc	ribbon
Phage_int_SAM_4	PF13495.1	gi|408405514|ref|YP_006863497.1|	-	0.00015	21.9	0.5	0.0008	19.6	0.1	2.5	2	0	0	2	2	2	1	Phage	integrase,	N-terminal	SAM-like	domain
zf-ribbon_3	PF13248.1	gi|408405514|ref|YP_006863497.1|	-	0.0003	19.8	4.9	0.0003	19.8	3.4	1.7	2	0	0	2	2	2	1	zinc-ribbon	domain
zinc_ribbon_2	PF13240.1	gi|408405514|ref|YP_006863497.1|	-	0.25	10.8	11.9	0.14	11.6	6.6	1.8	2	0	0	2	2	2	0	zinc-ribbon	domain
UPF0158	PF03682.8	gi|408405516|ref|YP_006863499.1|	-	0.11	12.1	2.2	0.15	11.6	1.6	1.3	1	1	0	1	1	1	0	Uncharacterised	protein	family	(UPF0158)
DUF3976	PF13121.1	gi|408405516|ref|YP_006863499.1|	-	0.16	11.8	0.0	0.29	10.9	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3976)
OSCP	PF00213.13	gi|408405517|ref|YP_006863500.1|	-	0.15	11.8	0.5	0.24	11.2	0.1	1.5	2	0	0	2	2	2	0	ATP	synthase	delta	(OSCP)	subunit
MCPVI	PF02993.9	gi|408405517|ref|YP_006863500.1|	-	0.84	9.7	5.1	1	9.4	3.5	1.1	1	0	0	1	1	1	0	Minor	capsid	protein	VI
HypA	PF01155.14	gi|408405517|ref|YP_006863500.1|	-	1.7	8.3	5.4	2.7	7.7	3.7	1.3	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
TrmB	PF01978.14	gi|408405519|ref|YP_006863502.1|	-	8.5e-15	54.2	0.0	1.8e-14	53.2	0.0	1.6	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.5	gi|408405519|ref|YP_006863502.1|	-	5.8e-05	22.6	0.1	0.00017	21.0	0.0	1.8	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
Regulator_TrmB	PF11495.3	gi|408405519|ref|YP_006863502.1|	-	0.00016	20.7	0.4	0.00022	20.2	0.3	1.2	1	0	0	1	1	1	1	Archaeal	transcriptional	regulator	TrmB
MarR_2	PF12802.2	gi|408405519|ref|YP_006863502.1|	-	0.00046	19.8	0.0	0.001	18.7	0.0	1.6	1	1	0	1	1	1	1	MarR	family
HTH_24	PF13412.1	gi|408405519|ref|YP_006863502.1|	-	0.013	14.8	0.0	0.03	13.7	0.0	1.7	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
DUF977	PF06163.6	gi|408405519|ref|YP_006863502.1|	-	0.069	12.9	0.0	0.17	11.6	0.0	1.8	1	1	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF977)
HTH_9	PF08221.6	gi|408405519|ref|YP_006863502.1|	-	0.091	12.6	0.1	2	8.3	0.0	2.4	2	0	0	2	2	2	0	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
HTH_5	PF01022.15	gi|408405519|ref|YP_006863502.1|	-	0.11	12.1	0.0	0.31	10.7	0.0	1.7	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
VWA_2	PF13519.1	gi|408405520|ref|YP_006863503.1|	-	3.5e-07	30.4	0.0	7.3e-07	29.4	0.0	1.5	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
VWA_CoxE	PF05762.9	gi|408405520|ref|YP_006863503.1|	-	0.042	12.9	0.0	0.079	12.0	0.0	1.5	1	0	0	1	1	1	0	VWA	domain	containing	CoxE-like	protein
AAA_5	PF07728.9	gi|408405521|ref|YP_006863504.1|	-	8.3e-22	77.4	0.0	3.5e-21	75.3	0.0	1.9	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
CbbQ_C	PF08406.5	gi|408405521|ref|YP_006863504.1|	-	5.4e-12	45.5	0.1	1e-11	44.6	0.1	1.4	1	0	0	1	1	1	1	CbbQ/NirQ/NorQ	C-terminal
AAA	PF00004.24	gi|408405521|ref|YP_006863504.1|	-	1e-05	25.7	0.0	2.4e-05	24.5	0.0	1.7	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Sigma54_activat	PF00158.21	gi|408405521|ref|YP_006863504.1|	-	0.00021	20.8	0.0	0.0004	19.8	0.0	1.4	1	0	0	1	1	1	1	Sigma-54	interaction	domain
Mg_chelatase	PF01078.16	gi|408405521|ref|YP_006863504.1|	-	0.0014	17.8	0.0	0.45	9.6	0.0	2.8	3	0	0	3	3	3	1	Magnesium	chelatase,	subunit	ChlI
IstB_IS21	PF01695.12	gi|408405521|ref|YP_006863504.1|	-	0.0021	17.4	0.0	0.0043	16.4	0.0	1.5	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
AAA_17	PF13207.1	gi|408405521|ref|YP_006863504.1|	-	0.0043	17.8	0.1	0.012	16.4	0.1	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_30	PF13604.1	gi|408405521|ref|YP_006863504.1|	-	0.007	15.9	0.1	0.31	10.5	0.0	2.5	3	0	0	3	3	3	1	AAA	domain
AAA_16	PF13191.1	gi|408405521|ref|YP_006863504.1|	-	0.03	14.2	0.0	0.14	12.1	0.0	1.9	2	0	0	2	2	2	0	AAA	ATPase	domain
AAA_19	PF13245.1	gi|408405521|ref|YP_006863504.1|	-	0.051	13.3	0.0	0.11	12.2	0.0	1.5	1	0	0	1	1	1	0	Part	of	AAA	domain
PhoH	PF02562.11	gi|408405521|ref|YP_006863504.1|	-	0.079	12.1	0.0	0.17	11.0	0.0	1.5	1	0	0	1	1	1	0	PhoH-like	protein
AAA_22	PF13401.1	gi|408405521|ref|YP_006863504.1|	-	0.11	12.6	0.4	0.6	10.2	0.3	2.1	1	1	0	1	1	1	0	AAA	domain
AAA_29	PF13555.1	gi|408405521|ref|YP_006863504.1|	-	0.13	11.8	0.0	1	8.9	0.0	2.2	2	0	0	2	2	2	0	P-loop	containing	region	of	AAA	domain
AAA_21	PF13304.1	gi|408405521|ref|YP_006863504.1|	-	0.16	11.9	0.5	0.49	10.3	0.0	2.1	3	0	0	3	3	3	0	AAA	domain
YiaAB	PF05360.9	gi|408405523|ref|YP_006863506.1|	-	0.01	15.3	1.6	0.039	13.4	0.2	2.0	2	0	0	2	2	2	0	yiaA/B	two	helix	domain
Tetraspannin	PF00335.15	gi|408405523|ref|YP_006863506.1|	-	0.12	11.6	5.8	0.14	11.4	4.0	1.1	1	0	0	1	1	1	0	Tetraspanin	family
DUF3185	PF11381.3	gi|408405523|ref|YP_006863506.1|	-	0.41	10.4	9.3	0.37	10.5	1.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3185)
COPI_assoc	PF08507.5	gi|408405523|ref|YP_006863506.1|	-	9.1	5.9	7.7	1.6	8.3	1.0	1.9	1	1	1	2	2	2	0	COPI	associated	protein
Uds1	PF15456.1	gi|408405524|ref|YP_006863507.1|	-	0.25	11.3	3.0	4.8	7.1	2.1	2.2	1	1	0	1	1	1	0	Up-regulated	During	Septation
Ribosomal_60s	PF00428.14	gi|408405524|ref|YP_006863507.1|	-	0.82	10.1	9.5	0.042	14.2	1.7	2.3	2	1	1	3	3	3	0	60s	Acidic	ribosomal	protein
Chordopox_A30L	PF06015.7	gi|408405525|ref|YP_006863508.1|	-	0.12	11.9	1.5	0.36	10.4	0.7	2.3	1	1	0	1	1	1	0	Chordopoxvirus	A30L	protein
DUF2393	PF09624.5	gi|408405526|ref|YP_006863509.1|	-	0.0017	17.8	1.5	0.0022	17.5	1.1	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2393)
Bundlin	PF05307.6	gi|408405526|ref|YP_006863509.1|	-	0.081	12.8	0.6	0.15	11.9	0.4	1.6	1	0	0	1	1	1	0	Bundlin
DUF4330	PF14221.1	gi|408405526|ref|YP_006863509.1|	-	0.096	12.5	2.0	0.064	13.1	0.3	1.6	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4330)
DUF3169	PF11368.3	gi|408405526|ref|YP_006863509.1|	-	0.1	11.8	1.5	0.14	11.3	1.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3169)
Arch_flagellin	PF01917.11	gi|408405526|ref|YP_006863509.1|	-	0.86	9.1	19.2	0.17	11.4	5.4	2.1	2	0	0	2	2	2	0	Archaebacterial	flagellin
DUF1628	PF07790.6	gi|408405526|ref|YP_006863509.1|	-	8.2	7.2	8.6	1.5	9.5	2.2	2.2	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1628)
T2SE	PF00437.15	gi|408405527|ref|YP_006863510.1|	-	2.5e-49	167.6	0.0	3.8e-49	167.0	0.0	1.2	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_29	PF13555.1	gi|408405527|ref|YP_006863510.1|	-	0.0015	17.9	0.1	0.0034	16.8	0.1	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
ABC_tran	PF00005.22	gi|408405527|ref|YP_006863510.1|	-	0.0022	18.3	0.0	0.0067	16.7	0.0	1.8	1	0	0	1	1	1	1	ABC	transporter
Miro	PF08477.8	gi|408405527|ref|YP_006863510.1|	-	0.018	15.5	0.0	0.048	14.1	0.0	1.8	1	0	0	1	1	1	0	Miro-like	protein
AAA_23	PF13476.1	gi|408405527|ref|YP_006863510.1|	-	0.04	14.2	6.1	0.16	12.2	0.1	2.4	2	0	0	2	2	2	0	AAA	domain
FtsK_SpoIIIE	PF01580.13	gi|408405527|ref|YP_006863510.1|	-	0.079	12.4	0.0	0.16	11.4	0.0	1.4	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
DUF258	PF03193.11	gi|408405527|ref|YP_006863510.1|	-	0.13	11.3	0.0	0.31	10.2	0.0	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
Pkip-1	PF06878.6	gi|408405527|ref|YP_006863510.1|	-	0.46	10.3	4.1	0.35	10.7	0.4	2.1	2	0	0	2	2	2	0	Pkip-1	protein
T2SF	PF00482.18	gi|408405528|ref|YP_006863511.1|	-	3.3e-11	43.1	5.3	2.6e-08	33.7	0.1	2.9	2	0	0	2	2	2	2	Type	II	secretion	system	(T2SS),	protein	F
HTH_45	PF14947.1	gi|408405529|ref|YP_006863512.1|	-	0.0062	16.3	0.9	0.0099	15.6	0.1	1.7	2	0	0	2	2	2	1	Winged	helix-turn-helix
TrmB	PF01978.14	gi|408405529|ref|YP_006863512.1|	-	0.0085	15.7	0.0	0.017	14.8	0.0	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Rio2_N	PF09202.6	gi|408405529|ref|YP_006863512.1|	-	0.13	12.3	0.2	0.35	10.9	0.1	1.7	1	1	1	2	2	2	0	Rio2,	N-terminal
Asn_synthase	PF00733.16	gi|408405530|ref|YP_006863513.1|	-	2.2e-40	138.7	0.0	6.1e-40	137.3	0.0	1.6	1	1	0	1	1	1	1	Asparagine	synthase
NAD_synthase	PF02540.12	gi|408405530|ref|YP_006863513.1|	-	1.4e-08	33.9	0.1	1.9e-08	33.5	0.1	1.2	1	0	0	1	1	1	1	NAD	synthase
ATP_bind_3	PF01171.15	gi|408405530|ref|YP_006863513.1|	-	0.00017	21.1	0.0	0.00033	20.2	0.0	1.6	1	0	0	1	1	1	1	PP-loop	family
tRNA_Me_trans	PF03054.11	gi|408405530|ref|YP_006863513.1|	-	0.00061	18.4	0.1	0.0016	17.0	0.1	1.7	1	1	0	1	1	1	1	tRNA	methyl	transferase
QueC	PF06508.8	gi|408405530|ref|YP_006863513.1|	-	0.00084	18.6	0.0	0.0014	17.9	0.0	1.4	1	0	0	1	1	1	1	Queuosine	biosynthesis	protein	QueC
His_biosynth	PF00977.16	gi|408405530|ref|YP_006863513.1|	-	0.028	13.6	0.1	0.038	13.2	0.0	1.2	1	0	0	1	1	1	0	Histidine	biosynthesis	protein
Antitoxin-MazE	PF04014.13	gi|408405531|ref|YP_006863514.1|	-	0.062	13.0	0.0	0.1	12.3	0.0	1.4	1	0	0	1	1	1	0	Antidote-toxin	recognition	MazE
Arc	PF03869.9	gi|408405531|ref|YP_006863514.1|	-	0.13	11.9	0.1	0.58	9.8	0.0	2.0	2	1	0	2	2	2	0	Arc-like	DNA	binding	domain
PIN	PF01850.16	gi|408405532|ref|YP_006863515.1|	-	4e-11	43.3	0.3	4.6e-11	43.1	0.2	1.1	1	0	0	1	1	1	1	PIN	domain
Cas_Cas1	PF01867.11	gi|408405533|ref|YP_006863516.1|	-	2.2e-10	40.0	0.0	2.4e-10	39.9	0.0	1.0	1	0	0	1	1	1	1	CRISPR	associated	protein	Cas1
Talin_middle	PF09141.5	gi|408405533|ref|YP_006863516.1|	-	0.016	14.8	0.0	0.019	14.6	0.0	1.1	1	0	0	1	1	1	0	Talin,	middle	domain
SIR2	PF02146.12	gi|408405533|ref|YP_006863516.1|	-	0.15	11.8	0.1	0.18	11.4	0.1	1.1	1	0	0	1	1	1	0	Sir2	family
Cas_Cas1	PF01867.11	gi|408405534|ref|YP_006863517.1|	-	3.9e-13	49.1	0.0	4.2e-13	49.0	0.0	1.0	1	0	0	1	1	1	1	CRISPR	associated	protein	Cas1
HTH_OrfB_IS605	PF12323.3	gi|408405535|ref|YP_006863518.1|	-	1.2e-07	30.8	1.3	1.2e-07	30.8	0.9	2.0	2	1	1	3	3	3	1	Helix-turn-helix	domain
PTPS	PF01242.14	gi|408405536|ref|YP_006863519.1|	-	2.5e-20	72.3	0.0	1.1e-18	67.0	0.0	2.1	1	1	1	2	2	2	2	6-pyruvoyl	tetrahydropterin	synthase
RmuC	PF02646.11	gi|408405536|ref|YP_006863519.1|	-	0.016	14.0	0.1	0.024	13.4	0.1	1.2	1	0	0	1	1	1	0	RmuC	family
QueC	PF06508.8	gi|408405537|ref|YP_006863520.1|	-	3.4e-48	163.7	0.0	4.1e-48	163.4	0.0	1.1	1	0	0	1	1	1	1	Queuosine	biosynthesis	protein	QueC
ThiI	PF02568.9	gi|408405537|ref|YP_006863520.1|	-	2.9e-05	23.6	0.0	0.00024	20.6	0.0	2.1	1	1	0	1	1	1	1	Thiamine	biosynthesis	protein	(ThiI)
Asn_synthase	PF00733.16	gi|408405537|ref|YP_006863520.1|	-	0.0073	15.8	0.0	0.011	15.2	0.0	1.3	1	0	0	1	1	1	1	Asparagine	synthase
tRNA_Me_trans	PF03054.11	gi|408405537|ref|YP_006863520.1|	-	0.0087	14.6	0.0	0.13	10.8	0.0	2.0	2	0	0	2	2	2	1	tRNA	methyl	transferase
ATP_bind_3	PF01171.15	gi|408405537|ref|YP_006863520.1|	-	0.016	14.7	0.0	0.081	12.4	0.0	2.0	1	1	0	1	1	1	0	PP-loop	family
Arginosuc_synth	PF00764.14	gi|408405537|ref|YP_006863520.1|	-	0.027	13.5	0.0	0.18	10.7	0.0	1.9	2	0	0	2	2	2	0	Arginosuccinate	synthase
NAD_synthase	PF02540.12	gi|408405537|ref|YP_006863520.1|	-	0.044	12.6	0.0	0.27	10.0	0.0	1.9	2	0	0	2	2	2	0	NAD	synthase
MobB	PF03205.9	gi|408405538|ref|YP_006863521.1|	-	3.3e-08	33.3	0.0	6e-08	32.4	0.0	1.4	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_29	PF13555.1	gi|408405538|ref|YP_006863521.1|	-	0.12	11.9	1.3	0.17	11.4	0.1	1.8	2	0	0	2	2	2	0	P-loop	containing	region	of	AAA	domain
PhoH	PF02562.11	gi|408405538|ref|YP_006863521.1|	-	0.13	11.4	0.1	0.39	9.9	0.1	1.8	1	1	1	2	2	2	0	PhoH-like	protein
AA_permease_2	PF13520.1	gi|408405539|ref|YP_006863522.1|	-	6.1e-43	146.9	51.4	8.4e-43	146.4	35.6	1.1	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease	PF00324.16	gi|408405539|ref|YP_006863522.1|	-	1.4e-34	119.2	45.3	1.9e-34	118.8	31.4	1.1	1	0	0	1	1	1	1	Amino	acid	permease
Usp	PF00582.21	gi|408405539|ref|YP_006863522.1|	-	6.4e-14	52.3	0.0	6.6e-08	32.8	0.0	2.4	2	0	0	2	2	2	2	Universal	stress	protein	family
AA_permease_C	PF13906.1	gi|408405539|ref|YP_006863522.1|	-	4.1e-05	23.3	4.1	4.1e-05	23.3	2.8	3.3	3	0	0	3	3	3	1	C-terminus	of	AA_permease
CDC48_N	PF02359.13	gi|408405540|ref|YP_006863523.1|	-	1.9e-15	56.5	2.0	3.9e-15	55.5	0.7	1.8	2	0	0	2	2	2	1	Cell	division	protein	48	(CDC48),	N-terminal	domain
HN	PF00423.14	gi|408405542|ref|YP_006863525.1|	-	0.046	12.0	0.1	0.085	11.1	0.1	1.4	1	0	0	1	1	1	0	Haemagglutinin-neuraminidase
HMG_CoA_synt_C	PF08540.5	gi|408405542|ref|YP_006863525.1|	-	0.11	11.9	0.9	0.18	11.2	0.1	1.7	2	0	0	2	2	2	0	Hydroxymethylglutaryl-coenzyme	A	synthase	C	terminal
BNR_2	PF13088.1	gi|408405543|ref|YP_006863526.1|	-	0.00052	19.3	1.4	0.004	16.4	1.0	2.3	1	1	0	1	1	1	1	BNR	repeat-like	domain
BNR	PF02012.15	gi|408405543|ref|YP_006863526.1|	-	0.0035	16.9	6.8	1.5	8.9	0.0	4.6	3	0	0	3	3	3	2	BNR/Asp-box	repeat
PQQ_2	PF13360.1	gi|408405543|ref|YP_006863526.1|	-	0.028	13.8	3.4	0.27	10.6	0.1	3.2	3	1	1	4	4	4	0	PQQ-like	domain
HTH_45	PF14947.1	gi|408405544|ref|YP_006863527.1|	-	1.4e-07	31.2	0.0	8.3e-07	28.7	0.0	1.9	1	1	1	2	2	2	1	Winged	helix-turn-helix
MarR	PF01047.17	gi|408405544|ref|YP_006863527.1|	-	3.2e-05	23.5	0.0	5e-05	22.9	0.0	1.2	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.1	gi|408405544|ref|YP_006863527.1|	-	0.0026	17.1	0.0	0.0041	16.4	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_27	PF13463.1	gi|408405544|ref|YP_006863527.1|	-	0.028	14.7	0.0	0.041	14.1	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_IclR	PF09339.5	gi|408405544|ref|YP_006863527.1|	-	0.049	13.2	0.0	0.078	12.5	0.0	1.4	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
DUF72	PF01904.13	gi|408405545|ref|YP_006863528.1|	-	9.2e-62	208.7	0.3	1.1e-61	208.5	0.2	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF72
zinc_ribbon_5	PF13719.1	gi|408405546|ref|YP_006863529.1|	-	0.03	13.9	2.5	0.038	13.5	0.1	2.0	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-HIT	PF04438.11	gi|408405546|ref|YP_006863529.1|	-	0.038	13.6	0.7	5.5	6.7	0.0	2.4	2	0	0	2	2	2	0	HIT	zinc	finger
zinc_ribbon_4	PF13717.1	gi|408405546|ref|YP_006863529.1|	-	0.055	13.1	2.9	0.061	13.0	0.1	2.0	2	0	0	2	2	2	0	zinc-ribbon	domain
Desulfoferrod_N	PF06397.7	gi|408405546|ref|YP_006863529.1|	-	0.099	12.0	1.5	1.1	8.7	0.0	2.2	2	0	0	2	2	2	0	Desulfoferrodoxin,	N-terminal	domain
TF_Zn_Ribbon	PF08271.7	gi|408405546|ref|YP_006863529.1|	-	0.23	10.7	1.3	5.3	6.4	0.0	2.1	2	0	0	2	2	2	0	TFIIB	zinc-binding
Zn_Tnp_IS1595	PF12760.2	gi|408405546|ref|YP_006863529.1|	-	0.39	10.5	2.7	1.6	8.6	2.0	1.9	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
Anp1	PF03452.9	gi|408405548|ref|YP_006863531.1|	-	0.043	12.9	0.1	0.051	12.7	0.0	1.1	1	0	0	1	1	1	0	Anp1
NinG	PF05766.7	gi|408405550|ref|YP_006863533.1|	-	2.3e-05	24.2	7.5	2.5e-05	24.1	5.2	1.0	1	0	0	1	1	1	1	Bacteriophage	Lambda	NinG	protein
zf-C2H2_jaz	PF12171.3	gi|408405550|ref|YP_006863533.1|	-	0.003	17.6	1.0	0.0071	16.4	0.7	1.7	1	0	0	1	1	1	1	Zinc-finger	double-stranded	RNA-binding
Ecl1	PF12855.2	gi|408405550|ref|YP_006863533.1|	-	0.003	16.8	2.4	0.0042	16.3	1.6	1.3	1	0	0	1	1	1	1	Life-span	regulatory	factor
zf-FCS	PF06467.9	gi|408405550|ref|YP_006863533.1|	-	0.0049	16.4	2.2	0.0072	15.9	1.5	1.4	1	0	0	1	1	1	1	MYM-type	Zinc	finger	with	FCS	sequence	motif
Molybdop_Fe4S4	PF04879.11	gi|408405550|ref|YP_006863533.1|	-	0.018	14.8	1.3	0.072	12.9	0.0	2.1	2	0	0	2	2	2	0	Molybdopterin	oxidoreductase	Fe4S4	domain
C1_1	PF00130.17	gi|408405550|ref|YP_006863533.1|	-	0.085	12.6	1.4	0.12	12.1	1.0	1.3	1	0	0	1	1	1	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
zf-H2C2_2	PF13465.1	gi|408405550|ref|YP_006863533.1|	-	0.13	12.6	0.6	0.13	12.6	0.4	1.8	2	0	0	2	2	2	0	Zinc-finger	double	domain
zf-CHCC	PF10276.4	gi|408405550|ref|YP_006863533.1|	-	0.2	11.5	0.9	0.2	11.5	0.6	1.7	2	0	0	2	2	2	0	Zinc-finger	domain
zf-MYND	PF01753.13	gi|408405550|ref|YP_006863533.1|	-	0.4	10.5	8.2	1.7	8.6	5.7	1.9	1	1	0	1	1	1	0	MYND	finger
zf-BED	PF02892.10	gi|408405550|ref|YP_006863533.1|	-	0.78	9.5	4.7	1.5	8.6	3.2	1.8	1	1	0	1	1	1	0	BED	zinc	finger
HD	PF01966.17	gi|408405553|ref|YP_006863536.1|	-	5.8e-13	48.9	0.3	1.2e-12	47.9	0.1	1.6	2	0	0	2	2	2	1	HD	domain
DUF2274	PF10038.4	gi|408405553|ref|YP_006863536.1|	-	0.025	14.7	0.0	0.056	13.5	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2274)
DUF796	PF05638.7	gi|408405555|ref|YP_006863538.1|	-	4.8e-10	39.5	0.0	5.1e-10	39.4	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF796)
TNV_CP	PF03898.8	gi|408405555|ref|YP_006863538.1|	-	0.041	12.9	0.0	0.045	12.8	0.0	1.0	1	0	0	1	1	1	0	Satellite	tobacco	necrosis	virus	coat	protein
Tubulin	PF00091.20	gi|408405557|ref|YP_006863540.1|	-	9.9e-27	94.1	1.2	4.4e-26	92.0	0.8	1.8	1	1	0	1	1	1	1	Tubulin/FtsZ	family,	GTPase	domain
FtsZ_C	PF12327.3	gi|408405557|ref|YP_006863540.1|	-	1.8e-26	92.0	1.1	4.5e-26	90.7	0.8	1.7	1	0	0	1	1	1	1	FtsZ	family,	C-terminal	domain
DUF1888	PF08985.6	gi|408405557|ref|YP_006863540.1|	-	0.0065	16.1	0.3	0.012	15.3	0.2	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1888)
Shikimate_DH	PF01488.15	gi|408405557|ref|YP_006863540.1|	-	0.051	13.6	0.2	0.14	12.2	0.2	1.7	1	0	0	1	1	1	0	Shikimate	/	quinate	5-dehydrogenase
ThiF	PF00899.16	gi|408405557|ref|YP_006863540.1|	-	0.49	10.2	3.2	0.28	10.9	0.1	2.2	2	1	1	3	3	3	0	ThiF	family
Radical_SAM	PF04055.16	gi|408405559|ref|YP_006863542.1|	-	3.4e-08	33.8	0.1	7.9e-08	32.6	0.0	1.6	1	0	0	1	1	1	1	Radical	SAM	superfamily
Propeptide_C25	PF08126.6	gi|408405559|ref|YP_006863542.1|	-	0.035	13.1	0.0	0.058	12.3	0.0	1.2	1	0	0	1	1	1	0	Propeptide_C25
HTH_20	PF12840.2	gi|408405560|ref|YP_006863543.1|	-	0.017	14.9	0.1	3.1	7.6	0.0	2.8	3	0	0	3	3	3	0	Helix-turn-helix	domain
TrmB	PF01978.14	gi|408405560|ref|YP_006863543.1|	-	0.066	12.9	0.2	0.55	9.9	0.1	2.4	2	0	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_45	PF14947.1	gi|408405560|ref|YP_006863543.1|	-	0.087	12.6	0.0	0.25	11.1	0.0	1.7	1	0	0	1	1	1	0	Winged	helix-turn-helix
HTH_24	PF13412.1	gi|408405560|ref|YP_006863543.1|	-	0.15	11.4	0.6	0.95	8.9	0.0	2.7	3	0	0	3	3	3	0	Winged	helix-turn-helix	DNA-binding
UbiA	PF01040.13	gi|408405561|ref|YP_006863544.1|	-	3.7e-31	108.2	15.9	4.8e-31	107.9	11.0	1.1	1	0	0	1	1	1	1	UbiA	prenyltransferase	family
zf-C2H2_2	PF12756.2	gi|408405562|ref|YP_006863545.1|	-	0.0085	16.1	0.2	0.0085	16.1	0.1	1.1	1	0	0	1	1	1	1	C2H2	type	zinc-finger	(2	copies)
Glyco_transf_4	PF13439.1	gi|408405562|ref|YP_006863545.1|	-	0.012	15.2	0.0	0.012	15.2	0.0	1.1	1	0	0	1	1	1	0	Glycosyltransferase	Family	4
DUF3880	PF12996.2	gi|408405562|ref|YP_006863545.1|	-	0.077	12.9	0.0	0.12	12.3	0.0	1.3	1	0	0	1	1	1	0	DUF	based	on	E.	rectale	Gene	description	(DUF3880)
zf-C2H2_jaz	PF12171.3	gi|408405562|ref|YP_006863545.1|	-	0.077	13.1	0.8	0.13	12.4	0.6	1.4	1	0	0	1	1	1	0	Zinc-finger	double-stranded	RNA-binding
KaiC	PF06745.8	gi|408405563|ref|YP_006863546.1|	-	0.00076	18.6	0.1	0.0012	17.9	0.0	1.2	1	0	0	1	1	1	1	KaiC
RHH_1	PF01402.16	gi|408405563|ref|YP_006863546.1|	-	0.17	11.7	3.1	0.46	10.4	0.0	2.9	4	0	0	4	4	4	0	Ribbon-helix-helix	protein,	copG	family
DHO_dh	PF01180.16	gi|408405564|ref|YP_006863547.1|	-	5.2e-38	130.6	0.0	6e-38	130.4	0.0	1.0	1	0	0	1	1	1	1	Dihydroorotate	dehydrogenase
FMN_dh	PF01070.13	gi|408405564|ref|YP_006863547.1|	-	0.043	12.6	0.0	0.067	12.0	0.0	1.2	1	0	0	1	1	1	0	FMN-dependent	dehydrogenase
NMO	PF03060.10	gi|408405564|ref|YP_006863547.1|	-	0.07	12.2	0.0	0.1	11.7	0.0	1.2	1	0	0	1	1	1	0	Nitronate	monooxygenase
MannoseP_isomer	PF01050.13	gi|408405566|ref|YP_006863549.1|	-	4e-23	81.7	0.1	4.7e-23	81.4	0.0	1.0	1	0	0	1	1	1	1	Mannose-6-phosphate	isomerase
Cupin_2	PF07883.6	gi|408405566|ref|YP_006863549.1|	-	3e-08	33.0	0.0	4.2e-08	32.5	0.0	1.2	1	0	0	1	1	1	1	Cupin	domain
FdtA	PF05523.6	gi|408405566|ref|YP_006863549.1|	-	5.3e-06	25.9	0.1	7.8e-06	25.4	0.0	1.3	1	0	0	1	1	1	1	WxcM-like,	C-terminal
AraC_binding	PF02311.14	gi|408405566|ref|YP_006863549.1|	-	0.011	15.4	0.0	0.018	14.7	0.0	1.4	1	1	0	1	1	1	0	AraC-like	ligand	binding	domain
Cupin_6	PF12852.2	gi|408405566|ref|YP_006863549.1|	-	0.016	14.7	0.0	0.017	14.7	0.0	1.1	1	0	0	1	1	1	0	Cupin
Cupin_7	PF12973.2	gi|408405566|ref|YP_006863549.1|	-	0.027	14.3	0.0	0.039	13.7	0.0	1.2	1	0	0	1	1	1	0	ChrR	Cupin-like	domain
DUF4384	PF14326.1	gi|408405566|ref|YP_006863549.1|	-	0.095	12.5	0.0	0.21	11.4	0.0	1.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4384)
Rieske	PF00355.21	gi|408405567|ref|YP_006863550.1|	-	0.0087	15.6	0.5	0.0089	15.5	0.3	1.1	1	0	0	1	1	1	1	Rieske	[2Fe-2S]	domain
PQ-loop	PF04193.9	gi|408405568|ref|YP_006863551.1|	-	2.9e-11	42.7	0.5	4.2e-11	42.2	0.1	1.5	1	1	1	2	2	2	1	PQ	loop	repeat
MtN3_slv	PF03083.11	gi|408405568|ref|YP_006863551.1|	-	4.8e-09	35.9	2.4	5.3e-09	35.8	1.7	1.0	1	0	0	1	1	1	1	Sugar	efflux	transporter	for	intercellular	exchange
LAB_N	PF07578.6	gi|408405568|ref|YP_006863551.1|	-	0.0025	17.7	0.5	0.0031	17.4	0.3	1.2	1	0	0	1	1	1	1	Lipid	A	Biosynthesis	N-terminal	domain
MFS_Mycoplasma	PF07672.8	gi|408405568|ref|YP_006863551.1|	-	0.058	12.5	2.9	0.062	12.4	2.0	1.1	1	0	0	1	1	1	0	Mycoplasma	MFS	transporter
Rod_cone_degen	PF15201.1	gi|408405569|ref|YP_006863552.1|	-	0.071	12.9	0.0	0.092	12.6	0.0	1.2	1	0	0	1	1	1	0	Progressive	rod-cone	degeneration
Topo-VIb_trans	PF09239.6	gi|408405570|ref|YP_006863553.1|	-	1.3e-33	115.8	0.9	8.9e-31	106.5	0.1	2.9	2	1	1	3	3	3	2	Topoisomerase	VI	B	subunit,	transducer
HATPase_c	PF02518.21	gi|408405570|ref|YP_006863553.1|	-	4.6e-11	42.4	0.0	1.1e-10	41.2	0.0	1.7	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_3	PF13589.1	gi|408405570|ref|YP_006863553.1|	-	2.8e-09	36.7	0.0	1.1e-08	34.8	0.0	2.0	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
TP6A_N	PF04406.9	gi|408405571|ref|YP_006863554.1|	-	3.5e-12	45.8	0.0	7.2e-12	44.7	0.0	1.5	1	0	0	1	1	1	1	Type	IIB	DNA	topoisomerase
DUF2399	PF09664.5	gi|408405571|ref|YP_006863554.1|	-	0.021	14.6	0.0	0.037	13.8	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	C-terminus	(DUF2399)
Integrin_beta	PF00362.13	gi|408405572|ref|YP_006863555.1|	-	0.021	13.7	0.0	0.026	13.4	0.0	1.1	1	0	0	1	1	1	0	Integrin,	beta	chain
Kelch_2	PF07646.10	gi|408405573|ref|YP_006863556.1|	-	0.0025	17.4	0.2	0.77	9.6	0.0	2.9	2	1	0	2	2	2	2	Kelch	motif
UPF0086	PF01868.11	gi|408405573|ref|YP_006863556.1|	-	0.011	15.3	0.1	0.49	10.0	0.0	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	UPF0086
Kelch_6	PF13964.1	gi|408405573|ref|YP_006863556.1|	-	0.08	13.1	0.1	11	6.4	0.0	2.7	3	0	0	3	3	3	0	Kelch	motif
DUF1697	PF08002.6	gi|408405575|ref|YP_006863558.1|	-	0.0057	16.6	0.0	0.0079	16.2	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1697)
Lactamase_B	PF00753.22	gi|408405576|ref|YP_006863559.1|	-	5.7e-13	48.9	0.4	1.2e-12	47.9	0.3	1.7	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.2	gi|408405576|ref|YP_006863559.1|	-	4e-08	33.0	0.1	8.7e-08	31.9	0.1	1.7	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
DUF45	PF01863.12	gi|408405577|ref|YP_006863560.1|	-	9e-54	182.3	1.1	1e-53	182.1	0.7	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF45
WLM	PF08325.5	gi|408405577|ref|YP_006863560.1|	-	3.9e-05	23.6	0.2	6.5e-05	22.8	0.1	1.3	1	0	0	1	1	1	1	WLM	domain
DUF2268	PF10026.4	gi|408405577|ref|YP_006863560.1|	-	0.048	13.0	0.1	0.085	12.2	0.0	1.4	1	0	0	1	1	1	0	Predicted	Zn-dependent	protease	(DUF2268)
DUF2171	PF09939.4	gi|408405578|ref|YP_006863561.1|	-	9e-10	38.4	0.2	0.011	15.7	0.0	3.2	3	0	0	3	3	3	3	Uncharacterized	protein	conserved	in	bacteria	(DUF2171)
bPH_2	PF03703.9	gi|408405578|ref|YP_006863561.1|	-	0.00049	20.0	0.0	1.3	9.0	0.0	3.1	3	0	0	3	3	3	2	Bacterial	PH	domain
Autophagy_act_C	PF03987.10	gi|408405578|ref|YP_006863561.1|	-	0.0092	16.1	0.5	7.7	6.7	0.1	2.8	2	0	0	2	2	2	2	Autophagocytosis	associated	protein,	active-site	domain
PRC	PF05239.11	gi|408405578|ref|YP_006863561.1|	-	0.053	13.3	3.7	12	5.8	0.0	3.5	3	0	0	3	3	3	0	PRC-barrel	domain
tRNA-synt_1b	PF00579.20	gi|408405580|ref|YP_006863563.1|	-	1e-41	143.0	0.0	2.3e-41	141.8	0.0	1.5	1	1	0	1	1	1	1	tRNA	synthetases	class	I	(W	and	Y)
Mannosyl_trans2	PF04188.8	gi|408405582|ref|YP_006863565.1|	-	0.0096	14.8	0.3	0.0096	14.8	0.2	1.0	1	0	0	1	1	1	1	Mannosyltransferase	(PIG-V))
Potass_KdpF	PF09604.5	gi|408405582|ref|YP_006863565.1|	-	0.53	10.1	2.1	0.94	9.3	1.4	1.5	1	1	0	1	1	1	0	F	subunit	of	K+-transporting	ATPase	(Potass_KdpF)
MFS_1	PF07690.11	gi|408405583|ref|YP_006863566.1|	-	0.0046	15.7	7.3	0.0055	15.4	5.0	1.0	1	0	0	1	1	1	1	Major	Facilitator	Superfamily
DUF1700	PF08006.6	gi|408405583|ref|YP_006863566.1|	-	8.1	5.6	6.3	8.8	5.5	4.4	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1700)
HTH_AsnC-type	PF13404.1	gi|408405585|ref|YP_006863568.1|	-	1.9e-15	56.1	0.1	5.6e-15	54.6	0.0	1.8	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
HTH_24	PF13412.1	gi|408405585|ref|YP_006863568.1|	-	1.8e-14	52.8	0.6	3e-14	52.1	0.1	1.6	2	0	0	2	2	1	1	Winged	helix-turn-helix	DNA-binding
AsnC_trans_reg	PF01037.16	gi|408405585|ref|YP_006863568.1|	-	1.1e-12	47.4	0.1	1.8e-12	46.7	0.1	1.3	1	0	0	1	1	1	1	AsnC	family
TrmB	PF01978.14	gi|408405585|ref|YP_006863568.1|	-	0.00018	21.1	0.4	0.0021	17.7	0.0	2.2	1	1	1	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.2	gi|408405585|ref|YP_006863568.1|	-	0.00021	20.8	0.1	0.00047	19.7	0.0	1.6	2	0	0	2	2	1	1	MarR	family
HTH_5	PF01022.15	gi|408405585|ref|YP_006863568.1|	-	0.00054	19.5	0.0	0.0027	17.3	0.0	2.2	3	0	0	3	3	2	1	Bacterial	regulatory	protein,	arsR	family
HTH_11	PF08279.7	gi|408405585|ref|YP_006863568.1|	-	0.0007	19.2	0.1	0.0017	17.9	0.1	1.7	1	0	0	1	1	1	1	HTH	domain
HTH_IclR	PF09339.5	gi|408405585|ref|YP_006863568.1|	-	0.00092	18.7	0.0	0.0017	17.9	0.0	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR	PF01047.17	gi|408405585|ref|YP_006863568.1|	-	0.0042	16.7	1.2	0.014	15.1	0.0	2.2	3	0	0	3	3	3	1	MarR	family
HTH_Tnp_ISL3	PF13542.1	gi|408405585|ref|YP_006863568.1|	-	0.0059	15.7	0.0	0.021	14.0	0.0	1.9	2	0	0	2	2	2	1	Helix-turn-helix	domain	of	transposase	family	ISL3
NapD	PF03927.8	gi|408405585|ref|YP_006863568.1|	-	0.011	15.6	1.4	0.021	14.6	0.3	1.8	2	0	0	2	2	2	0	NapD	protein
GYD	PF08734.6	gi|408405585|ref|YP_006863568.1|	-	0.013	15.2	0.1	0.057	13.1	0.0	2.0	1	1	0	1	1	1	0	GYD	domain
Sigma70_r4	PF04545.11	gi|408405585|ref|YP_006863568.1|	-	0.015	14.6	0.1	0.024	13.9	0.0	1.4	1	0	0	1	1	1	0	Sigma-70,	region	4
DUF2774	PF11242.3	gi|408405585|ref|YP_006863568.1|	-	0.016	15.2	0.3	0.045	13.7	0.0	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2774)
HTH_27	PF13463.1	gi|408405585|ref|YP_006863568.1|	-	0.019	15.2	0.0	0.055	13.7	0.0	1.8	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain
Mga	PF05043.8	gi|408405585|ref|YP_006863568.1|	-	0.026	14.8	0.0	0.06	13.6	0.0	1.6	2	0	0	2	2	1	0	Mga	helix-turn-helix	domain
HTH_DeoR	PF08220.7	gi|408405585|ref|YP_006863568.1|	-	0.027	14.0	0.1	0.055	13.0	0.0	1.5	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
FaeA	PF04703.7	gi|408405585|ref|YP_006863568.1|	-	0.038	14.1	0.0	0.071	13.2	0.0	1.5	1	0	0	1	1	1	0	FaeA-like	protein
RP-C	PF03428.8	gi|408405585|ref|YP_006863568.1|	-	0.038	13.4	0.0	0.075	12.4	0.0	1.4	1	0	0	1	1	1	0	Replication	protein	C	N-terminal	domain
HTH_20	PF12840.2	gi|408405585|ref|YP_006863568.1|	-	0.042	13.6	0.0	0.11	12.2	0.0	1.7	2	0	0	2	2	1	0	Helix-turn-helix	domain
DUF742	PF05331.6	gi|408405585|ref|YP_006863568.1|	-	0.065	12.8	0.1	0.13	11.8	0.0	1.6	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF742)
HTH_Mga	PF08280.6	gi|408405585|ref|YP_006863568.1|	-	0.072	12.8	0.1	0.27	11.0	0.0	2.0	2	0	0	2	2	2	0	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
LexA_DNA_bind	PF01726.11	gi|408405585|ref|YP_006863568.1|	-	0.08	12.5	0.2	1.4	8.5	0.0	2.6	3	0	0	3	3	3	0	LexA	DNA	binding	domain
MIase	PF02426.11	gi|408405585|ref|YP_006863568.1|	-	0.094	12.5	0.0	0.16	11.8	0.0	1.5	1	1	0	1	1	1	0	Muconolactone	delta-isomerase
Rrf2	PF02082.15	gi|408405585|ref|YP_006863568.1|	-	0.096	12.8	0.2	0.38	10.8	0.1	2.1	1	1	1	2	2	2	0	Transcriptional	regulator
Sigma70_r4_2	PF08281.7	gi|408405585|ref|YP_006863568.1|	-	0.097	12.1	0.0	0.25	10.8	0.0	1.7	1	0	0	1	1	1	0	Sigma-70,	region	4
B-block_TFIIIC	PF04182.7	gi|408405585|ref|YP_006863568.1|	-	0.11	12.2	0.0	0.22	11.3	0.0	1.6	1	1	0	1	1	1	0	B-block	binding	subunit	of	TFIIIC
HTH_34	PF13601.1	gi|408405585|ref|YP_006863568.1|	-	0.12	12.3	0.0	0.25	11.3	0.0	1.5	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain
Aminotran_3	PF00202.16	gi|408405586|ref|YP_006863569.1|	-	2e-105	352.3	0.0	2.6e-105	352.0	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class-III
Aminotran_1_2	PF00155.16	gi|408405586|ref|YP_006863569.1|	-	0.00014	20.9	0.0	0.00028	19.9	0.0	1.4	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
DUF3545	PF12065.3	gi|408405586|ref|YP_006863569.1|	-	0.094	12.4	0.4	0.2	11.4	0.3	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3545)
AA_kinase	PF00696.23	gi|408405587|ref|YP_006863570.1|	-	5.1e-34	117.9	5.6	5.8e-34	117.6	3.9	1.0	1	0	0	1	1	1	1	Amino	acid	kinase	family
Semialdhyde_dh	PF01118.19	gi|408405588|ref|YP_006863571.1|	-	2.9e-37	127.6	0.0	5.4e-37	126.7	0.0	1.5	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
Semialdhyde_dhC	PF02774.13	gi|408405588|ref|YP_006863571.1|	-	3.5e-22	79.1	0.0	4.9e-22	78.6	0.0	1.2	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	dimerisation	domain
F420_oxidored	PF03807.12	gi|408405588|ref|YP_006863571.1|	-	0.00013	22.2	0.0	0.00031	21.1	0.0	1.6	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
DapB_N	PF01113.15	gi|408405588|ref|YP_006863571.1|	-	0.00073	19.4	0.1	0.0015	18.4	0.0	1.6	1	0	0	1	1	1	1	Dihydrodipicolinate	reductase,	N-terminus
GFO_IDH_MocA	PF01408.17	gi|408405588|ref|YP_006863571.1|	-	0.0049	17.3	0.0	0.0092	16.5	0.0	1.5	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
NAD_binding_10	PF13460.1	gi|408405588|ref|YP_006863571.1|	-	0.011	15.6	0.0	0.022	14.7	0.0	1.5	1	0	0	1	1	1	0	NADH(P)-binding
Saccharop_dh	PF03435.13	gi|408405588|ref|YP_006863571.1|	-	0.086	11.7	0.0	0.11	11.4	0.0	1.2	1	0	0	1	1	1	0	Saccharopine	dehydrogenase
RimK	PF08443.6	gi|408405589|ref|YP_006863572.1|	-	1.6e-49	167.9	0.0	2.4e-49	167.3	0.0	1.3	1	0	0	1	1	1	1	RimK-like	ATP-grasp	domain
ATP-grasp_4	PF13535.1	gi|408405589|ref|YP_006863572.1|	-	4.3e-13	49.3	0.0	6.4e-13	48.8	0.0	1.2	1	0	0	1	1	1	1	ATP-grasp	domain
GSH-S_ATP	PF02955.11	gi|408405589|ref|YP_006863572.1|	-	1.9e-12	46.6	0.0	2.7e-12	46.1	0.0	1.2	1	0	0	1	1	1	1	Prokaryotic	glutathione	synthetase,	ATP-grasp	domain
ATP-grasp_3	PF02655.9	gi|408405589|ref|YP_006863572.1|	-	1.9e-08	34.3	0.0	4.4e-08	33.1	0.0	1.6	2	0	0	2	2	2	1	ATP-grasp	domain
ATPgrasp_Ter	PF15632.1	gi|408405589|ref|YP_006863572.1|	-	4.1e-08	32.3	0.0	1.2e-07	30.8	0.0	1.7	1	1	0	1	1	1	1	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
ATP-grasp	PF02222.17	gi|408405589|ref|YP_006863572.1|	-	5.3e-07	29.1	0.0	1.1e-06	28.1	0.0	1.5	1	1	0	1	1	1	1	ATP-grasp	domain
ATPgrasp_YheCD	PF14398.1	gi|408405589|ref|YP_006863572.1|	-	0.00016	20.5	0.0	0.032	13.0	0.0	2.4	1	1	1	2	2	2	2	YheC/D	like	ATP-grasp
CPSase_L_D2	PF02786.12	gi|408405589|ref|YP_006863572.1|	-	0.00025	20.4	0.1	0.00084	18.6	0.0	1.9	2	1	0	2	2	2	1	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
ATP-grasp_5	PF13549.1	gi|408405589|ref|YP_006863572.1|	-	0.0052	16.0	0.1	0.018	14.2	0.0	1.9	2	0	0	2	2	2	1	ATP-grasp	domain
Dala_Dala_lig_C	PF07478.8	gi|408405589|ref|YP_006863572.1|	-	0.03	13.6	0.0	0.17	11.2	0.0	2.1	1	1	0	1	1	1	0	D-ala	D-ala	ligase	C-terminus
zinc_ribbon_5	PF13719.1	gi|408405590|ref|YP_006863573.1|	-	6.5e-05	22.4	0.3	0.18	11.3	0.0	2.1	2	0	0	2	2	2	2	zinc-ribbon	domain
zinc_ribbon_4	PF13717.1	gi|408405590|ref|YP_006863573.1|	-	0.00014	21.4	1.0	0.014	15.0	1.1	2.1	1	1	1	2	2	2	2	zinc-ribbon	domain
HypA	PF01155.14	gi|408405590|ref|YP_006863573.1|	-	0.0005	19.7	0.5	0.00052	19.6	0.3	1.0	1	0	0	1	1	1	1	Hydrogenase	expression/synthesis	hypA	family
zf-ribbon_3	PF13248.1	gi|408405590|ref|YP_006863573.1|	-	0.00077	18.5	0.9	0.72	9.1	0.1	2.2	2	0	0	2	2	2	2	zinc-ribbon	domain
Lar_restr_allev	PF14354.1	gi|408405590|ref|YP_006863573.1|	-	0.0048	17.1	3.0	0.51	10.6	0.2	2.1	1	1	1	2	2	2	2	Restriction	alleviation	protein	Lar
PAAR_motif	PF05488.8	gi|408405590|ref|YP_006863573.1|	-	0.0067	16.3	0.7	0.01	15.7	0.1	1.6	1	1	0	2	2	2	1	PAAR	motif
Prok-RING_1	PF14446.1	gi|408405590|ref|YP_006863573.1|	-	0.0077	15.9	5.4	0.052	13.2	3.7	2.0	1	1	0	1	1	1	1	Prokaryotic	RING	finger	family	1
zf-C4_Topoisom	PF01396.14	gi|408405590|ref|YP_006863573.1|	-	0.0099	15.3	1.7	1.1	8.8	0.0	2.1	2	0	0	2	2	2	1	Topoisomerase	DNA	binding	C4	zinc	finger
Zn-ribbon_8	PF09723.5	gi|408405590|ref|YP_006863573.1|	-	0.013	15.3	3.2	0.054	13.4	2.3	1.8	1	1	1	2	2	2	0	Zinc	ribbon	domain
DNA_RNApol_7kD	PF03604.8	gi|408405590|ref|YP_006863573.1|	-	0.015	14.7	5.7	0.54	9.7	3.1	2.8	1	1	2	3	3	3	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
zinc_ribbon_2	PF13240.1	gi|408405590|ref|YP_006863573.1|	-	0.019	14.4	2.2	0.16	11.5	1.5	2.1	1	1	0	1	1	1	0	zinc-ribbon	domain
DZR	PF12773.2	gi|408405590|ref|YP_006863573.1|	-	0.02	14.7	0.6	0.035	13.9	0.4	1.5	1	1	0	1	1	1	0	Double	zinc	ribbon
zf-RING_3	PF14369.1	gi|408405590|ref|YP_006863573.1|	-	0.024	14.6	1.3	0.044	13.7	0.9	1.5	1	1	0	1	1	1	0	zinc-finger
OrfB_Zn_ribbon	PF07282.6	gi|408405590|ref|YP_006863573.1|	-	0.032	13.9	0.2	0.049	13.2	0.2	1.3	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
Zn_Tnp_IS1595	PF12760.2	gi|408405590|ref|YP_006863573.1|	-	0.038	13.7	0.2	1.3	8.8	0.0	2.1	2	0	0	2	2	2	0	Transposase	zinc-ribbon	domain
YhfH	PF14149.1	gi|408405590|ref|YP_006863573.1|	-	0.049	13.4	2.0	1.1	9.1	0.1	2.2	2	0	0	2	2	2	0	YhfH-like	protein
ADK_lid	PF05191.9	gi|408405590|ref|YP_006863573.1|	-	0.052	13.2	0.7	0.67	9.6	0.0	2.1	2	0	0	2	2	2	0	Adenylate	kinase,	active	site	lid
RNHCP	PF12647.2	gi|408405590|ref|YP_006863573.1|	-	0.062	13.1	0.1	0.069	12.9	0.1	1.1	1	0	0	1	1	1	0	RNHCP	domain
A2L_zn_ribbon	PF08792.5	gi|408405590|ref|YP_006863573.1|	-	0.076	12.4	2.3	2.6	7.5	0.1	2.2	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
Zn_ribbon_recom	PF13408.1	gi|408405590|ref|YP_006863573.1|	-	0.079	13.2	0.1	3.7	7.8	0.0	2.1	2	0	0	2	2	2	0	Recombinase	zinc	beta	ribbon	domain
zf-HYPF	PF07503.7	gi|408405590|ref|YP_006863573.1|	-	0.085	12.2	2.0	2	7.9	0.1	2.0	2	0	0	2	2	2	0	HypF	finger
Sgf11	PF08209.6	gi|408405590|ref|YP_006863573.1|	-	0.087	12.1	1.0	6.3	6.1	0.1	2.1	2	0	0	2	2	2	0	Sgf11	(transcriptional	regulation	protein)
DUF983	PF06170.7	gi|408405590|ref|YP_006863573.1|	-	0.088	12.9	0.7	6.7	6.9	0.1	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF983)
DUF1451	PF07295.6	gi|408405590|ref|YP_006863573.1|	-	0.17	11.6	0.4	0.22	11.2	0.3	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1451)
DUF3797	PF12677.2	gi|408405590|ref|YP_006863573.1|	-	0.17	11.5	3.1	3.5	7.3	0.1	2.2	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3797)
DUF1272	PF06906.6	gi|408405590|ref|YP_006863573.1|	-	0.17	11.7	3.5	4.3	7.2	0.3	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1272)
zf-dskA_traR	PF01258.12	gi|408405590|ref|YP_006863573.1|	-	0.19	11.5	4.5	3.3	7.5	0.3	2.2	2	0	0	2	2	2	0	Prokaryotic	dksA/traR	C4-type	zinc	finger
DUF329	PF03884.9	gi|408405590|ref|YP_006863573.1|	-	0.2	11.2	1.1	4.1	7.0	0.0	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF329)
Nudix_N_2	PF14803.1	gi|408405590|ref|YP_006863573.1|	-	0.24	11.1	2.6	5.5	6.7	0.2	2.2	2	0	0	2	2	2	0	Nudix	N-terminal
UPF0547	PF10571.4	gi|408405590|ref|YP_006863573.1|	-	0.24	11.0	1.6	8.2	6.2	0.2	2.3	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
Ribosomal_S27e	PF01667.12	gi|408405590|ref|YP_006863573.1|	-	0.25	10.9	2.5	5.7	6.5	0.1	1.9	1	1	0	2	2	2	0	Ribosomal	protein	S27
zf-CSL	PF05207.8	gi|408405590|ref|YP_006863573.1|	-	0.29	10.6	2.6	1.2	8.7	1.8	1.8	1	1	1	2	2	2	0	CSL	zinc	finger
BssC_TutF	PF08201.6	gi|408405590|ref|YP_006863573.1|	-	0.36	10.3	2.4	4.4	6.8	1.7	2.1	1	1	0	1	1	1	0	BssC/TutF	protein
TF_Zn_Ribbon	PF08271.7	gi|408405590|ref|YP_006863573.1|	-	0.37	10.1	3.6	1.6	8.1	0.4	1.8	1	1	1	2	2	2	0	TFIIB	zinc-binding
zf-IS66	PF13005.2	gi|408405590|ref|YP_006863573.1|	-	0.39	10.7	6.3	0.5	10.3	0.5	2.3	1	1	1	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
DUF164	PF02591.10	gi|408405590|ref|YP_006863573.1|	-	1.2	9.0	4.2	21	5.0	3.0	2.1	1	1	1	2	2	2	0	Putative	zinc	ribbon	domain
zf-C2H2_3	PF13878.1	gi|408405590|ref|YP_006863573.1|	-	1.7	8.2	3.8	9.8	5.8	0.1	2.2	1	1	1	2	2	2	0	zinc-finger	of	acetyl-transferase	ESCO
zf-TFIIB	PF13453.1	gi|408405590|ref|YP_006863573.1|	-	1.9	7.7	4.4	1.7	7.8	0.2	2.2	2	0	0	2	2	2	0	Transcription	factor	zinc-finger
Arginosuc_synth	PF00764.14	gi|408405591|ref|YP_006863574.1|	-	6.5e-162	538.9	0.6	7.5e-162	538.7	0.4	1.0	1	0	0	1	1	1	1	Arginosuccinate	synthase
Asn_synthase	PF00733.16	gi|408405591|ref|YP_006863574.1|	-	0.00032	20.2	0.0	0.0005	19.6	0.0	1.3	1	0	0	1	1	1	1	Asparagine	synthase
QueC	PF06508.8	gi|408405591|ref|YP_006863574.1|	-	0.0036	16.5	0.4	0.0089	15.3	0.0	1.9	3	0	0	3	3	3	1	Queuosine	biosynthesis	protein	QueC
Phenyl_P_gamma	PF09662.5	gi|408405591|ref|YP_006863574.1|	-	0.025	14.2	0.0	0.19	11.4	0.0	2.1	2	0	0	2	2	2	0	Phenylphosphate	carboxylase	gamma	subunit	(Phenyl_P_gamma)
tRNA_Me_trans	PF03054.11	gi|408405591|ref|YP_006863574.1|	-	0.048	12.2	0.0	0.085	11.3	0.0	1.5	1	0	0	1	1	1	0	tRNA	methyl	transferase
ACT_7	PF13840.1	gi|408405592|ref|YP_006863575.1|	-	3.5e-07	29.6	0.0	9.1e-07	28.3	0.0	1.8	1	0	0	1	1	1	1	ACT	domain
DUF4413	PF14372.1	gi|408405592|ref|YP_006863575.1|	-	0.075	13.0	0.0	0.18	11.7	0.0	1.8	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4413)
Spermine_synth	PF01564.12	gi|408405593|ref|YP_006863576.1|	-	7.7e-11	41.4	0.0	1.2e-10	40.7	0.0	1.3	1	0	0	1	1	1	1	Spermine/spermidine	synthase
Methyltransf_26	PF13659.1	gi|408405593|ref|YP_006863576.1|	-	1.2e-06	28.4	0.0	6.3e-06	26.2	0.0	2.2	2	0	0	2	2	2	1	Methyltransferase	domain
B12-binding_2	PF02607.12	gi|408405594|ref|YP_006863577.1|	-	2.3e-08	33.9	0.1	4.9e-08	32.9	0.1	1.6	1	0	0	1	1	1	1	B12	binding	domain
HTH_11	PF08279.7	gi|408405594|ref|YP_006863577.1|	-	5.4e-06	25.9	0.1	9.5e-06	25.1	0.1	1.4	1	0	0	1	1	1	1	HTH	domain
HTH_24	PF13412.1	gi|408405594|ref|YP_006863577.1|	-	4.3e-05	22.8	0.1	8.8e-05	21.8	0.0	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR	PF01047.17	gi|408405594|ref|YP_006863577.1|	-	0.0023	17.6	0.0	0.0054	16.4	0.0	1.7	1	0	0	1	1	1	1	MarR	family
DUF2250	PF10007.4	gi|408405594|ref|YP_006863577.1|	-	0.0059	16.4	0.1	0.012	15.4	0.0	1.5	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_IclR	PF09339.5	gi|408405594|ref|YP_006863577.1|	-	0.0073	15.8	0.0	0.019	14.5	0.0	1.7	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
GntR	PF00392.16	gi|408405594|ref|YP_006863577.1|	-	0.014	14.8	0.0	0.063	12.7	0.0	2.0	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	gntR	family
HTH_5	PF01022.15	gi|408405594|ref|YP_006863577.1|	-	0.024	14.2	0.0	0.053	13.2	0.0	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.2	gi|408405594|ref|YP_006863577.1|	-	0.025	14.2	0.0	0.073	12.7	0.0	1.8	1	0	0	1	1	1	0	MarR	family
HTH_45	PF14947.1	gi|408405594|ref|YP_006863577.1|	-	0.04	13.7	0.1	0.087	12.6	0.1	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix
Mnd1	PF03962.10	gi|408405594|ref|YP_006863577.1|	-	0.078	12.6	0.1	0.17	11.4	0.1	1.7	1	1	0	1	1	1	0	Mnd1	family
TrmB	PF01978.14	gi|408405594|ref|YP_006863577.1|	-	0.11	12.1	0.0	0.32	10.7	0.0	1.7	2	0	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
Yip1	PF04893.12	gi|408405595|ref|YP_006863578.1|	-	0.35	10.3	32.9	0.16	11.4	20.3	1.8	1	1	1	2	2	2	0	Yip1	domain
Dodecin	PF07311.7	gi|408405596|ref|YP_006863579.1|	-	3.8e-22	78.1	2.3	4.1e-22	78.0	1.6	1.0	1	0	0	1	1	1	1	Dodecin
YfdX	PF10938.3	gi|408405597|ref|YP_006863580.1|	-	0.07	12.7	1.5	0.083	12.5	0.1	1.6	1	1	0	1	1	1	0	YfdX	protein
Mn_catalase	PF05067.7	gi|408405598|ref|YP_006863581.1|	-	9.9e-22	77.0	0.0	1.2e-21	76.6	0.0	1.1	1	0	0	1	1	1	1	Manganese	containing	catalase
RE_HindIII	PF09518.5	gi|408405598|ref|YP_006863581.1|	-	0.099	11.5	0.0	0.13	11.1	0.0	1.1	1	0	0	1	1	1	0	HindIII	restriction	endonuclease
Mn_catalase	PF05067.7	gi|408405599|ref|YP_006863582.1|	-	0.00072	18.3	0.0	0.00091	18.0	0.0	1.1	1	0	0	1	1	1	1	Manganese	containing	catalase
ADH_zinc_N	PF00107.21	gi|408405600|ref|YP_006863583.1|	-	1.9e-33	114.7	0.2	3.2e-33	114.0	0.2	1.4	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_N	PF08240.7	gi|408405600|ref|YP_006863583.1|	-	1.6e-26	92.2	0.0	3e-26	91.3	0.0	1.5	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N_2	PF13602.1	gi|408405600|ref|YP_006863583.1|	-	1.5e-16	61.4	0.0	3.4e-16	60.3	0.0	1.5	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
Methyltransf_16	PF10294.4	gi|408405600|ref|YP_006863583.1|	-	0.0026	17.2	0.3	0.0041	16.5	0.2	1.3	1	0	0	1	1	1	1	Putative	methyltransferase
ACP_syn_III_C	PF08541.5	gi|408405600|ref|YP_006863583.1|	-	0.066	13.2	0.2	0.17	11.9	0.1	1.7	1	0	0	1	1	1	0	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III	C	terminal
TrkA_N	PF02254.13	gi|408405600|ref|YP_006863583.1|	-	0.07	13.1	0.0	0.18	11.7	0.0	1.7	1	0	0	1	1	1	0	TrkA-N	domain
AAA_7	PF12775.2	gi|408405601|ref|YP_006863584.1|	-	0.031	13.3	0.0	0.034	13.2	0.0	1.2	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region	D3
Pro_CA	PF00484.14	gi|408405601|ref|YP_006863584.1|	-	0.033	14.1	1.8	0.049	13.6	1.2	1.5	1	1	0	1	1	1	0	Carbonic	anhydrase
UPF0086	PF01868.11	gi|408405602|ref|YP_006863585.1|	-	0.063	12.9	0.1	14	5.4	0.0	2.6	2	1	0	2	2	2	0	Domain	of	unknown	function	UPF0086
Kelch_2	PF07646.10	gi|408405602|ref|YP_006863585.1|	-	0.074	12.8	0.0	0.82	9.5	0.0	2.4	2	1	1	3	3	3	0	Kelch	motif
DUF3296	PF11726.3	gi|408405603|ref|YP_006863586.1|	-	0.065	12.7	1.8	5.6	6.4	0.1	2.5	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF3296)
HicB	PF05534.7	gi|408405603|ref|YP_006863586.1|	-	0.078	12.5	0.0	0.15	11.6	0.0	1.5	1	0	0	1	1	1	0	HicB	family
DZR	PF12773.2	gi|408405604|ref|YP_006863587.1|	-	0.2	11.5	1.9	0.31	10.9	1.3	1.4	1	1	0	1	1	1	0	Double	zinc	ribbon
DUF164	PF02591.10	gi|408405604|ref|YP_006863587.1|	-	1	9.2	7.2	1.9	8.3	1.3	2.2	1	1	1	2	2	2	0	Putative	zinc	ribbon	domain
Ferritin	PF00210.19	gi|408405605|ref|YP_006863588.1|	-	0.0032	17.2	0.1	0.0037	17.0	0.1	1.0	1	0	0	1	1	1	1	Ferritin-like	domain
DUF964	PF06133.6	gi|408405605|ref|YP_006863588.1|	-	0.011	15.7	1.6	0.013	15.5	1.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF964)
Ku_PK_bind	PF08785.6	gi|408405605|ref|YP_006863588.1|	-	0.055	13.3	0.0	0.056	13.3	0.0	1.0	1	0	0	1	1	1	0	Ku	C	terminal	domain	like
eIF-1a	PF01176.14	gi|408405606|ref|YP_006863589.1|	-	2.1e-21	75.0	1.1	2.6e-21	74.8	0.8	1.1	1	0	0	1	1	1	1	Translation	initiation	factor	1A	/	IF-1
Myosin_N	PF02736.14	gi|408405606|ref|YP_006863589.1|	-	0.0054	16.3	0.5	0.017	14.7	0.1	1.9	2	0	0	2	2	2	1	Myosin	N-terminal	SH3-like	domain
DUF1314	PF07013.6	gi|408405606|ref|YP_006863589.1|	-	0.067	12.5	0.0	0.086	12.2	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1314)
zf-C2H2	PF00096.21	gi|408405607|ref|YP_006863590.1|	-	2.2e-05	24.5	1.5	2.9e-05	24.1	1.0	1.2	1	0	0	1	1	1	1	Zinc	finger,	C2H2	type
zf-C2H2_4	PF13894.1	gi|408405607|ref|YP_006863590.1|	-	0.0017	18.5	1.0	0.0025	18.0	0.7	1.3	1	0	0	1	1	1	1	C2H2-type	zinc	finger
zf-H2C2_2	PF13465.1	gi|408405607|ref|YP_006863590.1|	-	0.0051	17.0	3.3	0.28	11.5	0.1	2.2	2	0	0	2	2	2	2	Zinc-finger	double	domain
Zn-ribbon_8	PF09723.5	gi|408405607|ref|YP_006863590.1|	-	0.012	15.4	0.2	0.019	14.9	0.2	1.2	1	0	0	1	1	1	0	Zinc	ribbon	domain
SAE2	PF08573.5	gi|408405607|ref|YP_006863590.1|	-	0.021	15.4	0.2	0.022	15.4	0.2	1.1	1	0	0	1	1	1	0	DNA	repair	protein	endonuclease	SAE2/CtIP	C-terminus
zinc_ribbon_4	PF13717.1	gi|408405607|ref|YP_006863590.1|	-	0.022	14.4	0.1	0.29	10.8	0.1	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-C2HC_2	PF13913.1	gi|408405607|ref|YP_006863590.1|	-	0.023	14.3	1.1	0.043	13.4	0.8	1.5	1	1	0	1	1	1	0	zinc-finger	of	a	C2HC-type
zinc_ribbon_5	PF13719.1	gi|408405607|ref|YP_006863590.1|	-	0.029	13.9	0.4	0.32	10.6	0.2	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-C2H2_6	PF13912.1	gi|408405607|ref|YP_006863590.1|	-	0.04	13.8	2.5	0.049	13.5	1.7	1.2	1	0	0	1	1	1	0	C2H2-type	zinc	finger
DNA_alkylation	PF08713.6	gi|408405608|ref|YP_006863591.1|	-	1.4e-10	41.0	0.0	1.6e-10	40.8	0.0	1.1	1	0	0	1	1	1	1	DNA	alkylation	repair	enzyme
Toprim_2	PF13155.1	gi|408405608|ref|YP_006863591.1|	-	0.0037	17.5	0.0	0.005	17.1	0.0	1.2	1	0	0	1	1	1	1	Toprim-like
Toprim_4	PF13662.1	gi|408405608|ref|YP_006863591.1|	-	0.0037	17.2	0.0	0.0052	16.7	0.0	1.3	1	0	0	1	1	1	1	Toprim	domain
DNA_alkylation	PF08713.6	gi|408405609|ref|YP_006863592.1|	-	8.8e-36	123.4	0.9	1.1e-35	123.1	0.6	1.0	1	0	0	1	1	1	1	DNA	alkylation	repair	enzyme
Ribosomal_60s	PF00428.14	gi|408405610|ref|YP_006863593.1|	-	8e-18	64.6	18.3	9.2e-18	64.4	12.7	1.0	1	0	0	1	1	1	1	60s	Acidic	ribosomal	protein
DUF3824	PF12868.2	gi|408405610|ref|YP_006863593.1|	-	1.8	9.5	5.5	2.5	9.0	3.8	1.3	1	0	0	1	1	1	0	Domain	of	unknwon	function	(DUF3824)
PfkB	PF00294.19	gi|408405611|ref|YP_006863594.1|	-	1.6e-16	60.2	0.8	2.2e-16	59.8	0.5	1.1	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
Robl_LC7	PF03259.12	gi|408405613|ref|YP_006863596.1|	-	0.095	12.2	0.0	0.15	11.6	0.0	1.4	1	0	0	1	1	1	0	Roadblock/LC7	domain
DUF1869	PF08956.5	gi|408405613|ref|YP_006863596.1|	-	0.13	11.8	0.6	12	5.6	0.4	2.4	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF1869)
HMG-CoA_red	PF00368.13	gi|408405616|ref|YP_006863599.1|	-	0.11	11.1	5.5	0.13	10.9	3.8	1.0	1	0	0	1	1	1	0	Hydroxymethylglutaryl-coenzyme	A	reductase
HYR	PF02494.11	gi|408405617|ref|YP_006863600.1|	-	0.049	13.6	1.5	0.094	12.7	1.0	1.4	1	0	0	1	1	1	0	HYR	domain
HTH_45	PF14947.1	gi|408405618|ref|YP_006863601.1|	-	2.6e-11	43.1	0.3	2.9e-11	43.0	0.2	1.0	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF4364	PF14277.1	gi|408405618|ref|YP_006863601.1|	-	0.00096	18.7	0.1	0.0011	18.6	0.1	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4364)
Glyco_trans_1_4	PF13692.1	gi|408405621|ref|YP_006863604.1|	-	6.3e-05	23.1	0.0	0.00011	22.3	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.1	gi|408405621|ref|YP_006863604.1|	-	0.00042	20.5	0.0	0.00091	19.4	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glycos_transf_1	PF00534.15	gi|408405621|ref|YP_006863604.1|	-	0.0011	18.3	0.0	0.0023	17.4	0.0	1.6	1	1	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.1	gi|408405621|ref|YP_006863604.1|	-	0.0041	16.8	0.0	0.016	14.9	0.0	1.9	1	1	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.1	gi|408405621|ref|YP_006863604.1|	-	0.062	13.4	0.0	0.22	11.6	0.0	1.9	1	1	0	1	1	1	0	Glycosyl	transferase	4-like	domain
Glyco_transf_5	PF08323.6	gi|408405621|ref|YP_006863604.1|	-	0.14	11.6	0.1	0.52	9.7	0.1	2.0	1	1	1	2	2	2	0	Starch	synthase	catalytic	domain
Glycos_transf_1	PF00534.15	gi|408405622|ref|YP_006863605.1|	-	2.8e-18	65.8	0.0	4.7e-18	65.1	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.1	gi|408405622|ref|YP_006863605.1|	-	1.2e-06	28.4	0.0	1.6e-06	27.9	0.0	1.2	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_1_4	PF13692.1	gi|408405622|ref|YP_006863605.1|	-	0.00037	20.6	0.0	0.00073	19.6	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
HSP20	PF00011.16	gi|408405623|ref|YP_006863606.1|	-	1.6e-10	40.7	0.2	1.3e-08	34.6	0.1	2.3	1	1	0	1	1	1	1	Hsp20/alpha	crystallin	family
GvpH	PF05455.6	gi|408405623|ref|YP_006863606.1|	-	6e-05	22.7	0.1	0.0001	22.0	0.1	1.3	1	1	0	1	1	1	1	GvpH
CS	PF04969.11	gi|408405623|ref|YP_006863606.1|	-	0.00019	21.8	0.0	0.00029	21.3	0.0	1.3	1	0	0	1	1	1	1	CS	domain
DnaJ	PF00226.26	gi|408405624|ref|YP_006863607.1|	-	2e-29	101.0	4.9	3.2e-29	100.4	3.4	1.3	1	0	0	1	1	1	1	DnaJ	domain
CTDII	PF01556.13	gi|408405624|ref|YP_006863607.1|	-	2.5e-27	94.5	2.7	4.3e-20	71.3	0.1	3.4	3	1	0	3	3	3	2	DnaJ	C	terminal	domain
DnaJ_CXXCXGXG	PF00684.14	gi|408405624|ref|YP_006863607.1|	-	1.1e-12	47.7	16.6	1.7e-12	47.1	11.5	1.3	1	0	0	1	1	1	1	DnaJ	central	domain
HSP70	PF00012.15	gi|408405625|ref|YP_006863608.1|	-	2.1e-216	719.5	17.9	7.9e-197	654.8	8.6	2.0	1	1	1	2	2	2	2	Hsp70	protein
MreB_Mbl	PF06723.8	gi|408405625|ref|YP_006863608.1|	-	1.9e-17	62.8	5.2	5.4e-17	61.3	3.6	1.8	1	1	0	1	1	1	1	MreB/Mbl	protein
FGGY_C	PF02782.11	gi|408405625|ref|YP_006863608.1|	-	9.8e-05	22.0	0.3	0.0002	21.0	0.2	1.5	1	0	0	1	1	1	1	FGGY	family	of	carbohydrate	kinases,	C-terminal	domain
StbA	PF06406.6	gi|408405625|ref|YP_006863608.1|	-	0.0013	17.7	0.2	0.0034	16.3	0.2	1.7	1	0	0	1	1	1	1	StbA	protein
CDC37_C	PF08564.5	gi|408405625|ref|YP_006863608.1|	-	0.042	13.6	0.1	0.042	13.6	0.1	2.8	3	0	0	3	3	3	0	Cdc37	C	terminal	domain
MHC_I_2	PF14586.1	gi|408405625|ref|YP_006863608.1|	-	0.07	12.7	0.0	0.19	11.2	0.0	1.7	1	0	0	1	1	1	0	Class	I	Histocompatibility	antigen,	NKG2D	ligand,	domains	1	and	2
Hydantoinase_A	PF01968.13	gi|408405625|ref|YP_006863608.1|	-	2.9	6.9	10.3	0.5	9.4	0.1	3.7	3	1	1	4	4	4	0	Hydantoinase/oxoprolinase
FtsA	PF14450.1	gi|408405625|ref|YP_006863608.1|	-	3.9	7.3	14.2	19	5.0	0.4	4.9	2	1	0	2	2	2	0	Cell	division	protein	FtsA
SrfB	PF07520.6	gi|408405625|ref|YP_006863608.1|	-	6.9	3.9	7.4	3.7	4.8	0.0	2.5	3	0	0	3	3	3	0	Virulence	factor	SrfB
GrpE	PF01025.14	gi|408405626|ref|YP_006863609.1|	-	8.2e-41	139.3	5.7	1.1e-40	138.8	4.0	1.2	1	0	0	1	1	1	1	GrpE
AA_permease_N	PF08403.5	gi|408405626|ref|YP_006863609.1|	-	0.035	13.4	0.3	0.23	10.7	0.0	2.2	2	0	0	2	2	2	0	Amino	acid	permease	N-terminal
AMH_N	PF04709.7	gi|408405626|ref|YP_006863609.1|	-	0.039	12.8	1.5	0.053	12.4	1.1	1.1	1	0	0	1	1	1	0	Anti-Mullerian	hormone,	N	terminal	region
Guanylate_cyc	PF00211.15	gi|408405626|ref|YP_006863609.1|	-	0.046	13.0	0.1	0.14	11.4	0.0	1.7	1	1	1	2	2	2	0	Adenylate	and	Guanylate	cyclase	catalytic	domain
Sugarporin_N	PF11471.3	gi|408405626|ref|YP_006863609.1|	-	0.046	13.3	1.6	0.13	11.9	1.1	1.7	1	0	0	1	1	1	0	Maltoporin	periplasmic	N-terminal	extension
DUF3166	PF11365.3	gi|408405626|ref|YP_006863609.1|	-	0.13	12.7	3.0	0.39	11.1	2.1	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3166)
PilJ	PF13675.1	gi|408405626|ref|YP_006863609.1|	-	0.18	12.1	4.0	0.32	11.3	2.6	1.5	1	1	0	1	1	1	0	Type	IV	pili	methyl-accepting	chemotaxis	transducer	N-term
Prominin	PF05478.6	gi|408405626|ref|YP_006863609.1|	-	0.19	9.2	1.3	0.25	8.8	0.9	1.1	1	0	0	1	1	1	0	Prominin
V-SNARE	PF05008.10	gi|408405626|ref|YP_006863609.1|	-	0.25	11.5	5.0	2.9	8.1	0.2	2.5	1	1	1	2	2	2	0	Vesicle	transport	v-SNARE	protein	N-terminus
Erythro_esteras	PF05139.9	gi|408405626|ref|YP_006863609.1|	-	0.33	10.0	2.2	0.47	9.5	1.5	1.2	1	0	0	1	1	1	0	Erythromycin	esterase
DUF3391	PF11871.3	gi|408405626|ref|YP_006863609.1|	-	2.1	8.5	5.6	0.95	9.6	2.1	1.8	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF3391)
DUF883	PF05957.8	gi|408405626|ref|YP_006863609.1|	-	4.1	7.8	5.8	16	5.9	2.9	2.4	1	1	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF883)
DUF4404	PF14357.1	gi|408405626|ref|YP_006863609.1|	-	4.9	7.6	7.1	1.9	8.9	1.7	2.4	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF4404)
IncA	PF04156.9	gi|408405626|ref|YP_006863609.1|	-	9.1	5.8	8.7	13	5.3	6.1	1.2	1	0	0	1	1	1	0	IncA	protein
Thioredoxin	PF00085.15	gi|408405627|ref|YP_006863610.1|	-	7.9e-32	109.0	0.0	1.1e-31	108.5	0.0	1.2	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_2	PF13098.1	gi|408405627|ref|YP_006863610.1|	-	1.5e-11	44.4	0.1	1.1e-10	41.6	0.0	2.1	1	1	0	1	1	1	1	Thioredoxin-like	domain
Thioredoxin_8	PF13905.1	gi|408405627|ref|YP_006863610.1|	-	1.8e-08	34.3	0.0	1e-05	25.5	0.0	2.4	1	1	1	2	2	2	2	Thioredoxin-like
Redoxin	PF08534.5	gi|408405627|ref|YP_006863610.1|	-	1.5e-05	24.5	0.1	0.02	14.4	0.0	2.2	1	1	1	2	2	2	2	Redoxin
Thioredoxin_9	PF14595.1	gi|408405627|ref|YP_006863610.1|	-	2.4e-05	23.9	0.1	3.6e-05	23.3	0.1	1.4	1	1	0	1	1	1	1	Thioredoxin
Thioredoxin_3	PF13192.1	gi|408405627|ref|YP_006863610.1|	-	0.00024	20.8	0.1	0.00054	19.7	0.0	1.6	1	1	1	2	2	2	1	Thioredoxin	domain
Thioredoxin_4	PF13462.1	gi|408405627|ref|YP_006863610.1|	-	0.0016	18.4	0.1	0.42	10.5	0.0	2.3	1	1	1	2	2	2	2	Thioredoxin
Thioredoxin_5	PF13743.1	gi|408405627|ref|YP_006863610.1|	-	0.0029	17.1	0.5	2.5	7.6	0.0	2.9	2	1	1	3	3	3	2	Thioredoxin
HyaE	PF07449.6	gi|408405627|ref|YP_006863610.1|	-	0.0039	17.0	0.0	0.0089	15.9	0.0	1.5	1	0	0	1	1	1	1	Hydrogenase-1	expression	protein	HyaE
AhpC-TSA	PF00578.16	gi|408405627|ref|YP_006863610.1|	-	0.0091	15.6	0.1	0.49	10.0	0.0	2.2	1	1	1	2	2	2	1	AhpC/TSA	family
Thioredoxin_7	PF13899.1	gi|408405627|ref|YP_006863610.1|	-	0.014	15.4	0.0	0.023	14.7	0.0	1.4	1	0	0	1	1	1	0	Thioredoxin-like
Thioredoxin_6	PF13848.1	gi|408405627|ref|YP_006863610.1|	-	0.031	14.0	0.0	0.041	13.6	0.0	1.3	1	0	0	1	1	1	0	Thioredoxin-like	domain
Glutaredoxin	PF00462.19	gi|408405627|ref|YP_006863610.1|	-	0.056	13.4	0.0	0.15	12.0	0.0	1.8	1	1	0	1	1	1	0	Glutaredoxin
TraF	PF13728.1	gi|408405627|ref|YP_006863610.1|	-	0.074	12.5	0.1	0.19	11.1	0.0	1.8	1	1	1	2	2	2	0	F	plasmid	transfer	operon	protein
AhpC-TSA	PF00578.16	gi|408405630|ref|YP_006863613.1|	-	0.021	14.4	0.1	0.024	14.2	0.0	1.1	1	0	0	1	1	1	0	AhpC/TSA	family
DUF3505	PF12013.3	gi|408405630|ref|YP_006863613.1|	-	0.026	14.7	0.5	0.033	14.4	0.3	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3505)
zf-C2H2_2	PF12756.2	gi|408405630|ref|YP_006863613.1|	-	0.058	13.5	0.6	0.22	11.6	0.3	1.7	1	1	1	2	2	2	0	C2H2	type	zinc-finger	(2	copies)
zf-U1	PF06220.7	gi|408405630|ref|YP_006863613.1|	-	0.074	12.6	0.1	0.15	11.6	0.1	1.5	1	0	0	1	1	1	0	U1	zinc	finger
zf-DNA_Pol	PF08996.5	gi|408405630|ref|YP_006863613.1|	-	0.12	11.7	0.4	0.13	11.5	0.2	1.1	1	0	0	1	1	1	0	DNA	Polymerase	alpha	zinc	finger
E6	PF00518.12	gi|408405630|ref|YP_006863613.1|	-	0.18	12.1	1.5	0.46	10.8	1.0	1.6	1	1	0	1	1	1	0	Early	Protein	(E6)
eIF-5_eIF-2B	PF01873.12	gi|408405632|ref|YP_006863615.1|	-	1.9e-28	98.6	0.0	2.3e-28	98.3	0.0	1.1	1	0	0	1	1	1	1	Domain	found	in	IF2B/IF5
Lar_restr_allev	PF14354.1	gi|408405632|ref|YP_006863615.1|	-	0.00017	21.8	1.0	0.00027	21.1	0.7	1.2	1	0	0	1	1	1	1	Restriction	alleviation	protein	Lar
TF_Zn_Ribbon	PF08271.7	gi|408405632|ref|YP_006863615.1|	-	0.00081	18.6	0.4	0.0016	17.7	0.3	1.5	1	0	0	1	1	1	1	TFIIB	zinc-binding
Elf1	PF05129.8	gi|408405632|ref|YP_006863615.1|	-	0.033	13.8	0.1	0.054	13.1	0.1	1.3	1	0	0	1	1	1	0	Transcription	elongation	factor	Elf1	like
Cys_rich_KTR	PF14205.1	gi|408405632|ref|YP_006863615.1|	-	0.041	13.3	0.8	3.5	7.1	0.0	2.7	3	0	0	3	3	3	0	Cysteine-rich	KTR
DZR	PF12773.2	gi|408405632|ref|YP_006863615.1|	-	0.13	12.0	1.4	0.25	11.2	0.9	1.5	1	1	0	1	1	1	0	Double	zinc	ribbon
DNA_RNApol_7kD	PF03604.8	gi|408405632|ref|YP_006863615.1|	-	0.16	11.4	1.0	12	5.4	0.0	2.3	2	0	0	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
Prok-RING_1	PF14446.1	gi|408405632|ref|YP_006863615.1|	-	0.18	11.5	3.7	1.9	8.2	0.3	2.1	1	1	1	2	2	2	0	Prokaryotic	RING	finger	family	1
zf-ribbon_3	PF13248.1	gi|408405632|ref|YP_006863615.1|	-	0.21	10.8	3.9	1.4	8.2	2.8	2.0	1	1	1	2	2	2	0	zinc-ribbon	domain
Cys_rich_CPCC	PF14206.1	gi|408405632|ref|YP_006863615.1|	-	0.22	11.1	1.2	0.48	10.0	0.8	1.5	1	0	0	1	1	1	0	Cysteine-rich	CPCC
OrfB_Zn_ribbon	PF07282.6	gi|408405632|ref|YP_006863615.1|	-	0.23	11.1	0.9	0.48	10.1	0.6	1.4	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
Prim_Zn_Ribbon	PF08273.7	gi|408405632|ref|YP_006863615.1|	-	0.39	10.8	3.7	1.5	8.9	2.6	1.9	1	1	0	1	1	1	0	Zinc-binding	domain	of	primase-helicase
zf-TFIIB	PF13453.1	gi|408405632|ref|YP_006863615.1|	-	0.41	9.8	1.8	0.83	8.8	1.2	1.5	1	0	0	1	1	1	0	Transcription	factor	zinc-finger
Zn-ribbon_8	PF09723.5	gi|408405632|ref|YP_006863615.1|	-	1.3	9.0	3.8	3.5	7.6	0.2	2.2	1	1	1	2	2	2	0	Zinc	ribbon	domain
N6_N4_Mtase	PF01555.13	gi|408405633|ref|YP_006863616.1|	-	6.7e-40	137.0	2.8	1e-39	136.3	1.9	1.3	1	1	0	1	1	1	1	DNA	methylase
Methyltransf_26	PF13659.1	gi|408405633|ref|YP_006863616.1|	-	9.9e-09	35.2	0.0	4.8e-05	23.3	0.0	2.4	2	0	0	2	2	2	2	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|408405633|ref|YP_006863616.1|	-	0.00024	20.7	0.1	0.062	12.8	0.0	2.3	2	0	0	2	2	2	2	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|408405633|ref|YP_006863616.1|	-	0.0013	19.2	0.1	0.39	11.3	0.0	2.7	3	0	0	3	3	3	1	Methyltransferase	domain
MethyltransfD12	PF02086.10	gi|408405633|ref|YP_006863616.1|	-	0.003	17.0	0.0	1.9	7.8	0.0	2.5	2	0	0	2	2	2	2	D12	class	N6	adenine-specific	DNA	methyltransferase
Methyltransf_23	PF13489.1	gi|408405633|ref|YP_006863616.1|	-	0.0043	16.7	0.0	0.059	13.0	0.0	2.3	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|408405633|ref|YP_006863616.1|	-	0.012	16.0	1.1	0.34	11.4	0.0	3.1	4	0	0	4	4	4	0	Methyltransferase	domain
Methyltransf_11	PF08241.7	gi|408405633|ref|YP_006863616.1|	-	0.019	15.4	0.0	1	9.8	0.0	2.8	3	0	0	3	3	2	0	Methyltransferase	domain
Cons_hypoth95	PF03602.10	gi|408405633|ref|YP_006863616.1|	-	0.033	13.5	0.1	0.14	11.5	0.0	2.1	2	0	0	2	2	2	0	Conserved	hypothetical	protein	95
PrmA	PF06325.8	gi|408405633|ref|YP_006863616.1|	-	0.06	12.4	0.0	0.086	11.9	0.0	1.3	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
N6-adenineMlase	PF10237.4	gi|408405633|ref|YP_006863616.1|	-	0.099	12.3	0.0	0.23	11.1	0.0	1.7	1	0	0	1	1	1	0	Probable	N6-adenine	methyltransferase
Glycos_transf_2	PF00535.21	gi|408405637|ref|YP_006863620.1|	-	6.8e-35	120.2	0.2	1.1e-34	119.5	0.1	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.1	gi|408405637|ref|YP_006863620.1|	-	2.1e-31	109.5	0.0	7.8e-31	107.6	0.0	1.8	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
Chitin_synth_2	PF03142.10	gi|408405637|ref|YP_006863620.1|	-	1.4e-17	63.2	10.0	1.1e-16	60.3	5.5	2.7	2	1	0	2	2	2	1	Chitin	synthase
Glyco_trans_2_3	PF13632.1	gi|408405637|ref|YP_006863620.1|	-	2e-14	53.7	4.3	1.9e-13	50.5	3.0	2.2	1	1	0	1	1	1	1	Glycosyl	transferase	family	group	2
Glyco_transf_21	PF13506.1	gi|408405637|ref|YP_006863620.1|	-	1.9e-10	40.3	0.2	4.3e-07	29.3	0.0	2.2	1	1	1	2	2	2	2	Glycosyl	transferase	family	21
Glyco_tranf_2_2	PF10111.4	gi|408405637|ref|YP_006863620.1|	-	2.9e-07	29.8	0.2	2.9e-07	29.8	0.2	1.5	2	0	0	2	2	2	1	Glycosyltransferase	like	family	2
NTP_transferase	PF00483.18	gi|408405637|ref|YP_006863620.1|	-	0.014	14.7	0.1	0.021	14.1	0.1	1.2	1	0	0	1	1	1	0	Nucleotidyl	transferase
Glyco_tranf_2_4	PF13704.1	gi|408405637|ref|YP_006863620.1|	-	0.021	15.1	0.0	0.069	13.4	0.0	1.8	2	0	0	2	2	2	0	Glycosyl	transferase	family	2
Polysacc_deac_1	PF01522.16	gi|408405638|ref|YP_006863621.1|	-	2.1e-10	40.2	0.0	4e-10	39.3	0.0	1.4	2	0	0	2	2	2	1	Polysaccharide	deacetylase
ExbD	PF02472.11	gi|408405638|ref|YP_006863621.1|	-	0.087	12.8	0.0	0.32	10.9	0.0	1.9	2	0	0	2	2	2	0	Biopolymer	transport	protein	ExbD/TolR
UCR_Fe-S_N	PF10399.4	gi|408405638|ref|YP_006863621.1|	-	0.47	9.6	1.9	0.83	8.8	1.3	1.3	1	0	0	1	1	1	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
Epimerase	PF01370.16	gi|408405639|ref|YP_006863622.1|	-	1.8e-16	60.3	0.0	3.3e-16	59.4	0.0	1.4	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
DAO	PF01266.19	gi|408405639|ref|YP_006863622.1|	-	0.0021	16.9	0.1	0.0033	16.3	0.1	1.2	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
UDPG_MGDP_dh_N	PF03721.9	gi|408405639|ref|YP_006863622.1|	-	0.0027	17.0	0.0	0.0046	16.3	0.0	1.3	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
RmlD_sub_bind	PF04321.12	gi|408405639|ref|YP_006863622.1|	-	0.014	14.2	0.0	0.4	9.5	0.0	2.6	2	1	0	2	2	2	0	RmlD	substrate	binding	domain
Rossmann-like	PF10727.4	gi|408405639|ref|YP_006863622.1|	-	0.037	13.7	0.0	0.067	12.9	0.0	1.3	1	0	0	1	1	1	0	Rossmann-like	domain
DegT_DnrJ_EryC1	PF01041.12	gi|408405640|ref|YP_006863623.1|	-	4.2e-118	394.5	0.1	4.7e-118	394.3	0.1	1.0	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Aminotran_1_2	PF00155.16	gi|408405640|ref|YP_006863623.1|	-	1.2e-09	37.6	0.1	2.5e-09	36.5	0.0	1.6	2	0	0	2	2	2	1	Aminotransferase	class	I	and	II
Beta_elim_lyase	PF01212.16	gi|408405640|ref|YP_006863623.1|	-	1.3e-08	34.3	0.3	2.1e-08	33.6	0.2	1.3	1	0	0	1	1	1	1	Beta-eliminating	lyase
Aminotran_5	PF00266.14	gi|408405640|ref|YP_006863623.1|	-	1.3e-07	30.7	0.1	2.1e-07	30.0	0.1	1.3	1	0	0	1	1	1	1	Aminotransferase	class-V
Cys_Met_Meta_PP	PF01053.15	gi|408405640|ref|YP_006863623.1|	-	4.4e-06	25.2	0.2	6.2e-06	24.7	0.1	1.2	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
OKR_DC_1	PF01276.15	gi|408405640|ref|YP_006863623.1|	-	0.0013	17.3	0.0	0.002	16.7	0.0	1.2	1	0	0	1	1	1	1	Orn/Lys/Arg	decarboxylase,	major	domain
DUF1967	PF09269.6	gi|408405640|ref|YP_006863623.1|	-	0.015	14.9	0.0	0.035	13.7	0.0	1.7	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1967)
ComK	PF06338.6	gi|408405640|ref|YP_006863623.1|	-	0.066	12.6	0.0	0.12	11.8	0.0	1.4	1	0	0	1	1	1	0	ComK	protein
Ammonium_transp	PF00909.16	gi|408405641|ref|YP_006863624.1|	-	2.6e-109	365.3	31.5	3e-109	365.1	21.8	1.0	1	0	0	1	1	1	1	Ammonium	Transporter	Family
ArsA_ATPase	PF02374.10	gi|408405642|ref|YP_006863625.1|	-	2.7e-63	213.8	0.0	3.1e-63	213.6	0.0	1.0	1	0	0	1	1	1	1	Anion-transporting	ATPase
CbiA	PF01656.18	gi|408405642|ref|YP_006863625.1|	-	2.6e-12	46.5	0.5	9.9e-12	44.6	0.1	2.1	2	1	0	2	2	2	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
Fer4_NifH	PF00142.13	gi|408405642|ref|YP_006863625.1|	-	6.7e-05	22.2	0.1	0.00012	21.3	0.0	1.3	1	0	0	1	1	1	1	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
AAA_31	PF13614.1	gi|408405642|ref|YP_006863625.1|	-	0.00028	20.8	0.0	0.0018	18.2	0.0	2.0	1	1	0	1	1	1	1	AAA	domain
KaiC	PF06745.8	gi|408405642|ref|YP_006863625.1|	-	0.0014	17.8	0.0	0.0024	17.0	0.0	1.4	1	0	0	1	1	1	1	KaiC
PhoH	PF02562.11	gi|408405642|ref|YP_006863625.1|	-	0.0035	16.5	0.0	0.0078	15.4	0.0	1.6	2	0	0	2	2	2	1	PhoH-like	protein
IstB_IS21	PF01695.12	gi|408405642|ref|YP_006863625.1|	-	0.026	13.9	0.0	0.046	13.1	0.0	1.3	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
AAA_10	PF12846.2	gi|408405642|ref|YP_006863625.1|	-	0.054	12.9	0.0	0.074	12.4	0.0	1.3	1	1	0	1	1	1	0	AAA-like	domain
T2SE	PF00437.15	gi|408405642|ref|YP_006863625.1|	-	0.072	11.9	0.0	0.15	10.9	0.0	1.5	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
MipZ	PF09140.6	gi|408405642|ref|YP_006863625.1|	-	0.078	12.0	0.0	0.19	10.8	0.0	1.6	2	0	0	2	2	2	0	ATPase	MipZ
ArgK	PF03308.11	gi|408405642|ref|YP_006863625.1|	-	0.14	10.8	0.2	0.33	9.6	0.1	1.6	2	0	0	2	2	2	0	ArgK	protein
Fer4	PF00037.22	gi|408405643|ref|YP_006863626.1|	-	5.9e-09	35.1	12.6	6.4e-06	25.5	1.2	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.2	gi|408405643|ref|YP_006863626.1|	-	1.8e-08	34.6	29.6	1.1e-05	25.6	7.7	2.2	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|408405643|ref|YP_006863626.1|	-	1e-07	32.0	6.1	2.6e-07	30.7	4.3	1.7	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_8	PF13183.1	gi|408405643|ref|YP_006863626.1|	-	1.4e-07	31.3	24.6	2.3e-05	24.3	5.9	2.1	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|408405643|ref|YP_006863626.1|	-	9.5e-07	28.5	18.3	1.8e-05	24.4	5.7	2.0	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_15	PF13459.1	gi|408405643|ref|YP_006863626.1|	-	1.4e-06	28.7	4.5	0.0037	17.8	0.3	2.6	2	0	0	2	2	2	2	4Fe-4S	single	cluster	domain
Fer4_6	PF12837.2	gi|408405643|ref|YP_006863626.1|	-	2.3e-06	27.2	13.1	0.002	17.9	2.7	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_2	PF12797.2	gi|408405643|ref|YP_006863626.1|	-	5.3e-06	26.0	11.9	0.0055	16.5	1.9	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_17	PF13534.1	gi|408405643|ref|YP_006863626.1|	-	6.9e-06	26.3	9.0	6.1e-05	23.2	3.0	1.9	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_18	PF13746.1	gi|408405643|ref|YP_006863626.1|	-	2.5e-05	24.5	8.3	0.00013	22.2	4.4	2.3	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.1	gi|408405643|ref|YP_006863626.1|	-	3e-05	24.6	15.2	0.0012	19.5	4.9	2.3	1	1	1	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_21	PF14697.1	gi|408405643|ref|YP_006863626.1|	-	6.3e-05	22.7	8.8	0.0077	16.0	6.3	2.2	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_4	PF12800.2	gi|408405643|ref|YP_006863626.1|	-	7.7e-05	22.7	6.9	0.036	14.4	1.2	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_13	PF13370.1	gi|408405643|ref|YP_006863626.1|	-	9.4e-05	22.7	6.5	0.054	13.8	0.1	2.8	3	0	0	3	3	3	2	4Fe-4S	single	cluster	domain
Fer4_11	PF13247.1	gi|408405643|ref|YP_006863626.1|	-	0.0035	17.1	0.8	2	8.3	0.1	2.1	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_3	PF12798.2	gi|408405643|ref|YP_006863626.1|	-	0.077	13.5	16.7	0.27	11.8	1.5	2.4	2	0	0	2	2	2	0	4Fe-4S	binding	domain
hGDE_N	PF14699.1	gi|408405644|ref|YP_006863627.1|	-	0.0059	16.4	0.0	0.0092	15.8	0.0	1.3	1	0	0	1	1	1	1	N-terminal	domain	from	the	human	glycogen	debranching	enzyme
AlgF	PF11182.3	gi|408405644|ref|YP_006863627.1|	-	0.11	12.1	0.1	0.15	11.7	0.1	1.1	1	0	0	1	1	1	0	Alginate	O-acetyl	transferase	AlgF
NICE-3	PF07406.6	gi|408405645|ref|YP_006863628.1|	-	0.093	12.2	0.0	0.15	11.5	0.0	1.2	1	0	0	1	1	1	0	NICE-3	protein
FeoA	PF04023.9	gi|408405646|ref|YP_006863629.1|	-	0.0014	18.5	0.0	0.002	18.0	0.0	1.3	1	0	0	1	1	1	1	FeoA	domain
NapD	PF03927.8	gi|408405647|ref|YP_006863630.1|	-	0.067	13.0	0.0	0.067	13.0	0.0	1.1	1	0	0	1	1	1	0	NapD	protein
AAA	PF00004.24	gi|408405648|ref|YP_006863631.1|	-	5.1e-97	321.1	0.0	9.1e-49	165.0	0.0	2.3	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
CDC48_N	PF02359.13	gi|408405648|ref|YP_006863631.1|	-	5.6e-31	106.3	0.5	1.7e-30	104.7	0.3	1.9	1	0	0	1	1	1	1	Cell	division	protein	48	(CDC48),	N-terminal	domain
AAA_16	PF13191.1	gi|408405648|ref|YP_006863631.1|	-	1.7e-15	57.5	0.1	2.2e-07	31.0	0.0	3.3	2	1	1	3	3	3	2	AAA	ATPase	domain
AAA_2	PF07724.9	gi|408405648|ref|YP_006863631.1|	-	5.4e-15	55.7	0.0	1.3e-06	28.4	0.0	2.7	3	0	0	3	3	2	2	AAA	domain	(Cdc48	subfamily)
RuvB_N	PF05496.7	gi|408405648|ref|YP_006863631.1|	-	2.3e-14	53.0	0.0	8.8e-09	34.7	0.0	2.4	2	0	0	2	2	2	2	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_22	PF13401.1	gi|408405648|ref|YP_006863631.1|	-	1.5e-13	51.0	0.2	2.2e-05	24.5	0.0	4.0	2	2	0	2	2	2	2	AAA	domain
AAA_17	PF13207.1	gi|408405648|ref|YP_006863631.1|	-	1.2e-12	48.6	0.0	3.5e-05	24.6	0.0	2.8	2	1	0	2	2	2	2	AAA	domain
AAA_14	PF13173.1	gi|408405648|ref|YP_006863631.1|	-	5e-11	42.6	0.0	6.1e-05	22.9	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
TIP49	PF06068.8	gi|408405648|ref|YP_006863631.1|	-	1.5e-10	40.4	1.2	0.00014	20.6	0.0	2.6	3	0	0	3	3	3	2	TIP49	C-terminus
AAA_33	PF13671.1	gi|408405648|ref|YP_006863631.1|	-	5.9e-10	39.1	0.0	0.00028	20.7	0.0	2.6	2	1	0	2	2	2	2	AAA	domain
Zeta_toxin	PF06414.7	gi|408405648|ref|YP_006863631.1|	-	1.5e-09	37.2	0.1	8.2e-05	21.7	0.0	2.5	2	0	0	2	2	2	2	Zeta	toxin
AAA_5	PF07728.9	gi|408405648|ref|YP_006863631.1|	-	2e-09	37.3	1.9	0.0003	20.5	0.1	4.4	4	2	0	4	4	3	2	AAA	domain	(dynein-related	subfamily)
IstB_IS21	PF01695.12	gi|408405648|ref|YP_006863631.1|	-	1.7e-08	34.0	0.5	0.0034	16.8	0.0	2.3	2	0	0	2	2	2	2	IstB-like	ATP	binding	protein
Sigma54_activat	PF00158.21	gi|408405648|ref|YP_006863631.1|	-	4.6e-08	32.7	0.1	0.016	14.7	0.0	3.4	3	1	0	3	3	2	2	Sigma-54	interaction	domain
AAA_18	PF13238.1	gi|408405648|ref|YP_006863631.1|	-	5.2e-07	30.0	0.0	0.028	14.7	0.0	2.7	2	0	0	2	2	2	2	AAA	domain
AAA_19	PF13245.1	gi|408405648|ref|YP_006863631.1|	-	7.3e-07	28.8	4.6	0.0051	16.5	0.1	3.0	3	0	0	3	3	2	2	Part	of	AAA	domain
AAA_28	PF13521.1	gi|408405648|ref|YP_006863631.1|	-	8e-07	29.1	0.0	0.0091	15.9	0.0	2.6	2	0	0	2	2	2	2	AAA	domain
RNA_helicase	PF00910.17	gi|408405648|ref|YP_006863631.1|	-	8.2e-07	29.1	0.0	0.029	14.5	0.0	2.6	2	0	0	2	2	2	2	RNA	helicase
KaiC	PF06745.8	gi|408405648|ref|YP_006863631.1|	-	2.1e-06	27.0	1.4	0.11	11.6	0.0	3.4	2	1	1	3	3	3	2	KaiC
Arch_ATPase	PF01637.13	gi|408405648|ref|YP_006863631.1|	-	2.8e-06	27.2	0.0	0.0043	16.7	0.0	3.3	2	1	1	3	3	3	1	Archaeal	ATPase
Bac_DnaA	PF00308.13	gi|408405648|ref|YP_006863631.1|	-	5.1e-06	26.3	0.0	0.016	14.8	0.0	2.6	2	0	0	2	2	2	2	Bacterial	dnaA	protein
PhoH	PF02562.11	gi|408405648|ref|YP_006863631.1|	-	6.8e-06	25.4	0.6	0.067	12.4	0.1	2.4	2	0	0	2	2	2	2	PhoH-like	protein
NACHT	PF05729.7	gi|408405648|ref|YP_006863631.1|	-	7.9e-06	25.6	0.1	0.4	10.3	0.0	3.6	4	0	0	4	4	4	2	NACHT	domain
Mg_chelatase	PF01078.16	gi|408405648|ref|YP_006863631.1|	-	1.1e-05	24.7	0.8	0.033	13.3	0.0	2.5	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
AAA_24	PF13479.1	gi|408405648|ref|YP_006863631.1|	-	1.8e-05	24.4	0.7	0.027	14.0	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
ABC_tran	PF00005.22	gi|408405648|ref|YP_006863631.1|	-	1.9e-05	25.0	0.1	0.15	12.3	0.0	2.6	2	0	0	2	2	2	2	ABC	transporter
Sigma54_activ_2	PF14532.1	gi|408405648|ref|YP_006863631.1|	-	1.9e-05	24.7	0.0	0.1	12.6	0.0	2.5	2	0	0	2	2	2	2	Sigma-54	interaction	domain
NB-ARC	PF00931.17	gi|408405648|ref|YP_006863631.1|	-	4.8e-05	22.3	0.1	0.1	11.4	0.0	2.2	2	0	0	2	2	2	2	NB-ARC	domain
AAA_25	PF13481.1	gi|408405648|ref|YP_006863631.1|	-	5e-05	22.7	5.5	0.66	9.3	0.2	3.9	2	2	2	4	4	4	2	AAA	domain
CDC48_2	PF02933.12	gi|408405648|ref|YP_006863631.1|	-	6.2e-05	22.5	0.0	0.00015	21.3	0.0	1.7	1	0	0	1	1	1	1	Cell	division	protein	48	(CDC48),	domain	2
DUF2075	PF09848.4	gi|408405648|ref|YP_006863631.1|	-	0.0001	21.3	0.0	0.39	9.6	0.0	2.4	2	0	0	2	2	2	2	Uncharacterized	conserved	protein	(DUF2075)
DUF815	PF05673.8	gi|408405648|ref|YP_006863631.1|	-	0.00032	19.7	0.0	0.09	11.6	0.0	2.5	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF815)
ATP-synt_ab	PF00006.20	gi|408405648|ref|YP_006863631.1|	-	0.00032	20.2	0.0	0.69	9.3	0.0	2.4	2	0	0	2	2	2	2	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
T2SE	PF00437.15	gi|408405648|ref|YP_006863631.1|	-	0.00055	18.9	0.0	0.62	8.9	0.0	2.3	2	0	0	2	2	2	2	Type	II/IV	secretion	system	protein
AAA_3	PF07726.6	gi|408405648|ref|YP_006863631.1|	-	0.00066	19.2	0.0	0.52	9.9	0.0	2.5	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
NTPase_1	PF03266.10	gi|408405648|ref|YP_006863631.1|	-	0.00071	19.3	0.3	4.1	7.0	0.0	3.8	2	1	1	3	3	3	0	NTPase
ResIII	PF04851.10	gi|408405648|ref|YP_006863631.1|	-	0.0015	18.4	0.0	0.52	10.1	0.0	2.3	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
Parvo_NS1	PF01057.12	gi|408405648|ref|YP_006863631.1|	-	0.0022	16.9	0.1	0.26	10.1	0.0	2.2	2	0	0	2	2	2	1	Parvovirus	non-structural	protein	NS1
AAA_30	PF13604.1	gi|408405648|ref|YP_006863631.1|	-	0.0022	17.5	0.1	2.1	7.8	0.0	2.5	2	0	0	2	2	2	1	AAA	domain
UPF0079	PF02367.12	gi|408405648|ref|YP_006863631.1|	-	0.0032	17.0	0.0	2.6	7.6	0.0	2.7	3	0	0	3	3	2	1	Uncharacterised	P-loop	hydrolase	UPF0079
SKI	PF01202.17	gi|408405648|ref|YP_006863631.1|	-	0.0036	17.1	0.1	0.95	9.3	0.0	2.4	2	0	0	2	2	2	1	Shikimate	kinase
AAA_11	PF13086.1	gi|408405648|ref|YP_006863631.1|	-	0.0062	16.1	0.0	1	8.9	0.0	2.4	2	0	0	2	2	2	1	AAA	domain
Guanylate_kin	PF00625.16	gi|408405648|ref|YP_006863631.1|	-	0.015	14.7	0.1	12	5.2	0.0	3.4	3	1	1	4	4	3	0	Guanylate	kinase
Viral_helicase1	PF01443.13	gi|408405648|ref|YP_006863631.1|	-	0.026	14.0	0.0	0.9	9.0	0.0	2.2	2	0	0	2	2	2	0	Viral	(Superfamily	1)	RNA	helicase
AFG1_ATPase	PF03969.11	gi|408405648|ref|YP_006863631.1|	-	0.031	13.0	0.0	6.9	5.3	0.0	2.6	2	0	0	2	2	2	0	AFG1-like	ATPase
AAA_29	PF13555.1	gi|408405648|ref|YP_006863631.1|	-	0.035	13.6	0.6	5.3	6.6	0.1	2.4	2	0	0	2	2	2	0	P-loop	containing	region	of	AAA	domain
IPT	PF01745.11	gi|408405648|ref|YP_006863631.1|	-	0.041	13.0	0.9	8.3	5.5	0.1	2.8	3	0	0	3	3	3	0	Isopentenyl	transferase
AAA_23	PF13476.1	gi|408405648|ref|YP_006863631.1|	-	0.046	14.0	0.5	5	7.3	0.1	2.5	2	0	0	2	2	2	0	AAA	domain
CPT	PF07931.7	gi|408405648|ref|YP_006863631.1|	-	0.073	12.6	0.0	8.9	5.8	0.0	2.7	2	0	0	2	2	2	0	Chloramphenicol	phosphotransferase-like	protein
SRPRB	PF09439.5	gi|408405648|ref|YP_006863631.1|	-	0.15	11.2	0.0	13	4.9	0.0	2.3	2	0	0	2	2	2	0	Signal	recognition	particle	receptor	beta	subunit
KAP_NTPase	PF07693.9	gi|408405648|ref|YP_006863631.1|	-	0.17	10.8	0.1	7.2	5.4	0.0	2.5	2	1	1	3	3	3	0	KAP	family	P-loop	domain
PIF1	PF05970.9	gi|408405648|ref|YP_006863631.1|	-	0.18	10.7	0.0	17	4.2	0.0	2.2	2	0	0	2	2	2	0	PIF1-like	helicase
DUF258	PF03193.11	gi|408405648|ref|YP_006863631.1|	-	0.18	10.9	0.0	9.5	5.3	0.0	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function,	DUF258
DUF2436	PF10365.4	gi|408405649|ref|YP_006863632.1|	-	0.033	13.8	0.3	0.052	13.1	0.1	1.3	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF2436)
zf-C2H2	PF00096.21	gi|408405650|ref|YP_006863633.1|	-	2.1e-05	24.6	0.1	2.8e-05	24.2	0.1	1.2	1	0	0	1	1	1	1	Zinc	finger,	C2H2	type
zf-C2H2_4	PF13894.1	gi|408405650|ref|YP_006863633.1|	-	0.00014	21.9	0.2	0.00023	21.2	0.1	1.3	1	0	0	1	1	1	1	C2H2-type	zinc	finger
zf-C2H2_jaz	PF12171.3	gi|408405650|ref|YP_006863633.1|	-	0.1	12.8	0.0	0.17	12.0	0.0	1.3	1	0	0	1	1	1	0	Zinc-finger	double-stranded	RNA-binding
zf-C2HC_2	PF13913.1	gi|408405650|ref|YP_006863633.1|	-	0.15	11.7	0.5	0.29	10.8	0.3	1.5	1	1	0	1	1	1	0	zinc-finger	of	a	C2HC-type
CBS	PF00571.23	gi|408405651|ref|YP_006863634.1|	-	1.9e-24	85.1	2.3	7.8e-13	47.9	0.1	2.1	2	0	0	2	2	2	2	CBS	domain
CBS	PF00571.23	gi|408405652|ref|YP_006863635.1|	-	5e-40	135.0	8.7	2.6e-11	43.0	0.4	4.3	4	0	0	4	4	4	4	CBS	domain
Ribosomal_S30AE	PF02482.14	gi|408405652|ref|YP_006863635.1|	-	0.031	14.6	0.9	0.092	13.1	0.6	1.7	1	0	0	1	1	1	0	Sigma	54	modulation	protein	/	S30EA	ribosomal	protein
N-glycanase_N	PF09112.5	gi|408405652|ref|YP_006863635.1|	-	0.12	11.7	0.1	3	7.1	0.0	2.7	3	0	0	3	3	3	0	Peptide-N-glycosidase	F,	N	terminal
GSDH	PF07995.6	gi|408405653|ref|YP_006863636.1|	-	5.5e-91	305.0	0.0	8.6e-91	304.4	0.0	1.2	1	0	0	1	1	1	1	Glucose	/	Sorbosone	dehydrogenase
Reg_prop	PF07494.6	gi|408405653|ref|YP_006863636.1|	-	0.0036	17.1	0.0	0.84	9.8	0.0	3.2	3	0	0	3	3	3	1	Two	component	regulator	propeller
SGL	PF08450.7	gi|408405653|ref|YP_006863636.1|	-	0.049	12.9	0.0	7.7	5.8	0.0	2.5	2	1	0	2	2	2	0	SMP-30/Gluconolaconase/LRE-like	region
PQQ_3	PF13570.1	gi|408405653|ref|YP_006863636.1|	-	0.05	13.8	0.9	36	4.8	0.1	3.8	4	0	0	4	4	4	0	PQQ-like	domain
HMG-CoA_red	PF00368.13	gi|408405654|ref|YP_006863637.1|	-	3.9e-87	292.3	12.8	4.6e-87	292.1	8.9	1.0	1	0	0	1	1	1	1	Hydroxymethylglutaryl-coenzyme	A	reductase
HisG	PF01634.13	gi|408405655|ref|YP_006863638.1|	-	6.3e-38	129.9	0.1	8.2e-38	129.5	0.0	1.1	1	0	0	1	1	1	1	ATP	phosphoribosyltransferase
HisG_C	PF08029.6	gi|408405655|ref|YP_006863638.1|	-	3.1e-14	52.6	0.0	8.9e-14	51.1	0.0	1.9	1	0	0	1	1	1	1	HisG,	C-terminal	domain
Histidinol_dh	PF00815.15	gi|408405656|ref|YP_006863639.1|	-	6.4e-140	466.4	8.2	7.6e-140	466.1	5.7	1.0	1	0	0	1	1	1	1	Histidinol	dehydrogenase
Aminotran_1_2	PF00155.16	gi|408405657|ref|YP_006863640.1|	-	4.9e-43	147.4	0.0	5.4e-43	147.3	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Alliinase_C	PF04864.8	gi|408405657|ref|YP_006863640.1|	-	3.1e-06	26.1	0.0	5.4e-06	25.3	0.0	1.4	1	0	0	1	1	1	1	Allinase
Cys_Met_Meta_PP	PF01053.15	gi|408405657|ref|YP_006863640.1|	-	0.03	12.5	0.0	0.046	12.0	0.0	1.2	1	0	0	1	1	1	0	Cys/Met	metabolism	PLP-dependent	enzyme
DUF3294	PF07957.6	gi|408405657|ref|YP_006863640.1|	-	0.073	12.5	0.1	0.4	10.1	0.0	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3294)
HAD_2	PF13419.1	gi|408405658|ref|YP_006863641.1|	-	5.5e-07	29.9	0.1	0.023	14.9	0.0	2.3	2	0	0	2	2	2	2	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.21	gi|408405658|ref|YP_006863641.1|	-	3.5e-06	27.5	0.1	3.7e-05	24.2	0.0	2.3	2	1	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.1	gi|408405658|ref|YP_006863641.1|	-	0.00041	20.0	0.1	0.00072	19.2	0.0	1.4	1	0	0	1	1	1	1	HAD-hyrolase-like
HAD	PF12710.2	gi|408405658|ref|YP_006863641.1|	-	0.0011	19.1	0.1	0.0029	17.7	0.0	1.8	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Thioredoxin_5	PF13743.1	gi|408405658|ref|YP_006863641.1|	-	0.059	12.9	0.0	0.47	10.0	0.0	2.0	2	0	0	2	2	2	0	Thioredoxin
HSP20	PF00011.16	gi|408405659|ref|YP_006863642.1|	-	8.7e-12	44.7	1.6	1.3e-10	41.0	1.1	2.1	1	1	0	1	1	1	1	Hsp20/alpha	crystallin	family
CS	PF04969.11	gi|408405659|ref|YP_006863642.1|	-	3.5e-05	24.2	1.1	5.2e-05	23.7	0.7	1.2	1	0	0	1	1	1	1	CS	domain
GvpH	PF05455.6	gi|408405659|ref|YP_006863642.1|	-	0.0091	15.6	0.0	0.01	15.4	0.0	1.2	1	0	0	1	1	1	1	GvpH
IGPD	PF00475.13	gi|408405660|ref|YP_006863643.1|	-	2.6e-46	157.0	2.6	4e-46	156.4	1.8	1.3	1	0	0	1	1	1	1	Imidazoleglycerol-phosphate	dehydratase
GATase	PF00117.23	gi|408405661|ref|YP_006863644.1|	-	1.4e-34	119.2	0.0	1.5e-34	119.1	0.0	1.0	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
GATase_3	PF07685.9	gi|408405661|ref|YP_006863644.1|	-	5.1e-09	35.9	0.1	6.2e-09	35.6	0.1	1.3	1	1	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
Peptidase_C26	PF07722.8	gi|408405661|ref|YP_006863644.1|	-	3.4e-08	33.2	0.5	5.3e-06	26.0	0.4	2.8	1	1	0	1	1	1	1	Peptidase	C26
SNO	PF01174.14	gi|408405661|ref|YP_006863644.1|	-	7.8e-08	32.1	0.0	7.1e-05	22.5	0.0	2.0	2	0	0	2	2	2	2	SNO	glutamine	amidotransferase	family
His_biosynth	PF00977.16	gi|408405662|ref|YP_006863645.1|	-	3.8e-71	238.9	4.2	4.3e-71	238.8	2.9	1.0	1	0	0	1	1	1	1	Histidine	biosynthesis	protein
DHO_dh	PF01180.16	gi|408405662|ref|YP_006863645.1|	-	3.2e-09	36.1	0.6	7.8e-05	21.7	0.1	2.1	2	0	0	2	2	2	2	Dihydroorotate	dehydrogenase
Dus	PF01207.12	gi|408405662|ref|YP_006863645.1|	-	5.4e-09	35.3	0.5	2.7e-07	29.7	0.0	2.1	2	0	0	2	2	2	1	Dihydrouridine	synthase	(Dus)
PcrB	PF01884.12	gi|408405662|ref|YP_006863645.1|	-	2.7e-08	33.3	1.6	0.00034	19.9	0.1	2.3	2	0	0	2	2	2	2	PcrB	family
NMO	PF03060.10	gi|408405662|ref|YP_006863645.1|	-	5.5e-05	22.4	2.0	0.0049	16.0	0.1	2.2	2	0	0	2	2	2	2	Nitronate	monooxygenase
IMPDH	PF00478.20	gi|408405662|ref|YP_006863645.1|	-	0.00024	20.1	1.9	0.012	14.5	0.2	2.2	2	0	0	2	2	2	2	IMP	dehydrogenase	/	GMP	reductase	domain
IGPS	PF00218.16	gi|408405662|ref|YP_006863645.1|	-	0.00057	19.0	0.7	0.18	10.8	0.0	2.6	2	1	1	3	3	3	2	Indole-3-glycerol	phosphate	synthase
FMN_dh	PF01070.13	gi|408405662|ref|YP_006863645.1|	-	0.0037	16.1	2.1	0.022	13.5	0.3	2.2	2	0	0	2	2	2	1	FMN-dependent	dehydrogenase
ThiG	PF05690.9	gi|408405662|ref|YP_006863645.1|	-	0.0061	15.6	1.9	0.59	9.1	0.1	2.7	2	1	1	3	3	3	1	Thiazole	biosynthesis	protein	ThiG
Pterin_bind	PF00809.17	gi|408405662|ref|YP_006863645.1|	-	0.028	13.7	0.9	0.041	13.2	0.6	1.3	1	0	0	1	1	1	0	Pterin	binding	enzyme
Trp_syntA	PF00290.15	gi|408405662|ref|YP_006863645.1|	-	0.033	12.7	2.5	0.11	11.0	0.1	2.3	2	0	0	2	2	2	0	Tryptophan	synthase	alpha	chain
Oxidored_FMN	PF00724.15	gi|408405662|ref|YP_006863645.1|	-	0.072	12.0	0.0	0.1	11.5	0.0	1.2	1	0	0	1	1	1	0	NADH:flavin	oxidoreductase	/	NADH	oxidase	family
TMP-TENI	PF02581.12	gi|408405662|ref|YP_006863645.1|	-	0.36	9.9	2.6	3.6	6.6	0.3	2.4	2	1	0	2	2	2	0	Thiamine	monophosphate	synthase/TENI
His_biosynth	PF00977.16	gi|408405663|ref|YP_006863646.1|	-	3.4e-87	291.4	2.7	4e-87	291.2	1.9	1.0	1	0	0	1	1	1	1	Histidine	biosynthesis	protein
Dus	PF01207.12	gi|408405663|ref|YP_006863646.1|	-	3.1e-09	36.0	0.1	8.2e-05	21.5	0.0	2.1	1	1	1	2	2	2	2	Dihydrouridine	synthase	(Dus)
PcrB	PF01884.12	gi|408405663|ref|YP_006863646.1|	-	9.4e-06	25.0	2.9	1.3e-05	24.5	0.1	2.4	2	2	2	4	4	4	1	PcrB	family
ThiG	PF05690.9	gi|408405663|ref|YP_006863646.1|	-	3.2e-05	23.1	0.3	0.018	14.1	0.0	2.1	2	0	0	2	2	2	2	Thiazole	biosynthesis	protein	ThiG
NMO	PF03060.10	gi|408405663|ref|YP_006863646.1|	-	6.4e-05	22.2	0.4	0.1	11.6	0.0	2.2	2	0	0	2	2	2	2	Nitronate	monooxygenase
DHO_dh	PF01180.16	gi|408405663|ref|YP_006863646.1|	-	0.00027	19.9	0.1	0.022	13.7	0.0	2.2	2	0	0	2	2	2	2	Dihydroorotate	dehydrogenase
TMP-TENI	PF02581.12	gi|408405663|ref|YP_006863646.1|	-	0.00049	19.2	0.1	0.4	9.7	0.0	2.3	2	0	0	2	2	2	2	Thiamine	monophosphate	synthase/TENI
Trp_syntA	PF00290.15	gi|408405663|ref|YP_006863646.1|	-	0.055	12.0	0.1	0.085	11.3	0.1	1.2	1	0	0	1	1	1	0	Tryptophan	synthase	alpha	chain
DUF2207	PF09972.4	gi|408405664|ref|YP_006863647.1|	-	0.011	14.3	0.5	0.011	14.3	0.3	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
DUF2852	PF11014.3	gi|408405664|ref|YP_006863647.1|	-	0.076	12.9	4.1	4.5	7.2	0.0	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2852)
CbiQ	PF02361.11	gi|408405664|ref|YP_006863647.1|	-	0.18	11.3	8.0	0.61	9.6	5.5	1.7	1	1	0	1	1	1	0	Cobalt	transport	protein
PrgI	PF12666.2	gi|408405664|ref|YP_006863647.1|	-	1.6	8.9	7.1	4.7	7.4	4.9	1.7	1	1	0	1	1	1	0	PrgI	family	protein
DUF805	PF05656.9	gi|408405664|ref|YP_006863647.1|	-	4.7	7.0	6.7	8.9	6.1	4.6	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF805)
HTH_45	PF14947.1	gi|408405665|ref|YP_006863648.1|	-	0.019	14.7	0.0	0.021	14.6	0.0	1.2	1	0	0	1	1	1	0	Winged	helix-turn-helix
Copper-bind	PF00127.15	gi|408405666|ref|YP_006863649.1|	-	2.9e-09	37.0	0.4	9.8e-08	32.1	0.3	2.1	1	1	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
Cupredoxin_1	PF13473.1	gi|408405666|ref|YP_006863649.1|	-	6.4e-08	32.4	0.0	7.8e-08	32.1	0.0	1.1	1	0	0	1	1	1	1	Cupredoxin-like	domain
DUF2207	PF09972.4	gi|408405667|ref|YP_006863650.1|	-	7.8	4.9	7.1	9	4.7	4.9	1.1	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
Acylphosphatase	PF00708.13	gi|408405669|ref|YP_006863652.1|	-	4e-29	100.5	0.2	4.3e-29	100.4	0.1	1.0	1	0	0	1	1	1	1	Acylphosphatase
Orn_Arg_deC_N	PF02784.11	gi|408405670|ref|YP_006863653.1|	-	9.1e-40	136.4	0.0	1.2e-39	135.9	0.0	1.1	1	0	0	1	1	1	1	Pyridoxal-dependent	decarboxylase,	pyridoxal	binding	domain
Orn_DAP_Arg_deC	PF00278.17	gi|408405670|ref|YP_006863653.1|	-	2.2e-08	33.8	0.0	4.9e-08	32.6	0.0	1.5	1	0	0	1	1	1	1	Pyridoxal-dependent	decarboxylase,	C-terminal	sheet	domain
AAA	PF00004.24	gi|408405671|ref|YP_006863654.1|	-	1.1e-100	333.0	0.1	4.7e-51	172.4	0.0	2.6	3	0	0	3	3	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
CDC48_N	PF02359.13	gi|408405671|ref|YP_006863654.1|	-	1.3e-29	101.9	0.3	3.4e-29	100.6	0.2	1.8	1	0	0	1	1	1	1	Cell	division	protein	48	(CDC48),	N-terminal	domain
AAA_2	PF07724.9	gi|408405671|ref|YP_006863654.1|	-	3.1e-17	63.0	0.0	3.2e-08	33.6	0.0	2.4	2	0	0	2	2	2	2	AAA	domain	(Cdc48	subfamily)
RuvB_N	PF05496.7	gi|408405671|ref|YP_006863654.1|	-	5.8e-15	54.9	0.1	3.6e-09	36.0	0.0	2.7	3	0	0	3	3	2	2	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_16	PF13191.1	gi|408405671|ref|YP_006863654.1|	-	1.3e-14	54.5	0.1	4.7e-07	29.9	0.0	3.2	2	1	0	2	2	2	2	AAA	ATPase	domain
AAA_22	PF13401.1	gi|408405671|ref|YP_006863654.1|	-	3.3e-13	49.9	0.1	1.4e-05	25.2	0.0	4.2	2	2	0	2	2	2	2	AAA	domain
AAA_17	PF13207.1	gi|408405671|ref|YP_006863654.1|	-	2.1e-11	44.7	0.0	1.3e-05	26.0	0.0	2.8	2	0	0	2	2	2	2	AAA	domain
AAA_33	PF13671.1	gi|408405671|ref|YP_006863654.1|	-	4.5e-11	42.7	0.0	0.00041	20.2	0.0	2.6	2	1	0	2	2	2	2	AAA	domain
AAA_5	PF07728.9	gi|408405671|ref|YP_006863654.1|	-	6.8e-11	42.0	0.9	0.00011	21.8	0.1	4.1	2	2	0	2	2	2	2	AAA	domain	(dynein-related	subfamily)
TIP49	PF06068.8	gi|408405671|ref|YP_006863654.1|	-	7.3e-11	41.4	0.1	0.00012	20.9	0.0	2.3	2	0	0	2	2	2	2	TIP49	C-terminus
AAA_14	PF13173.1	gi|408405671|ref|YP_006863654.1|	-	1.2e-10	41.4	0.0	1.6e-05	24.8	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
Zeta_toxin	PF06414.7	gi|408405671|ref|YP_006863654.1|	-	1e-09	37.7	0.0	6.3e-05	22.1	0.0	2.6	2	0	0	2	2	2	2	Zeta	toxin
IstB_IS21	PF01695.12	gi|408405671|ref|YP_006863654.1|	-	1.7e-08	34.0	0.2	0.0032	16.9	0.0	2.3	2	0	0	2	2	2	2	IstB-like	ATP	binding	protein
Sigma54_activat	PF00158.21	gi|408405671|ref|YP_006863654.1|	-	3.3e-08	33.1	0.2	0.026	13.9	0.0	3.6	3	1	0	3	3	3	2	Sigma-54	interaction	domain
CDC48_2	PF02933.12	gi|408405671|ref|YP_006863654.1|	-	5.5e-08	32.3	0.1	1.4e-07	30.9	0.0	1.7	1	0	0	1	1	1	1	Cell	division	protein	48	(CDC48),	domain	2
Bac_DnaA	PF00308.13	gi|408405671|ref|YP_006863654.1|	-	9e-07	28.7	0.0	0.001	18.7	0.0	2.4	2	0	0	2	2	2	1	Bacterial	dnaA	protein
KaiC	PF06745.8	gi|408405671|ref|YP_006863654.1|	-	1.2e-06	27.8	0.9	0.1	11.6	0.0	3.6	2	1	1	3	3	3	2	KaiC
AAA_19	PF13245.1	gi|408405671|ref|YP_006863654.1|	-	1.2e-06	28.1	4.9	0.0051	16.5	0.1	3.7	3	0	0	3	3	3	2	Part	of	AAA	domain
RNA_helicase	PF00910.17	gi|408405671|ref|YP_006863654.1|	-	1.5e-06	28.3	0.0	0.035	14.2	0.0	2.8	2	0	0	2	2	2	2	RNA	helicase
Arch_ATPase	PF01637.13	gi|408405671|ref|YP_006863654.1|	-	2e-06	27.7	0.1	0.0014	18.3	0.1	3.7	2	2	2	4	4	4	2	Archaeal	ATPase
AAA_25	PF13481.1	gi|408405671|ref|YP_006863654.1|	-	2e-06	27.3	5.1	0.58	9.5	0.2	4.2	2	2	1	4	4	4	2	AAA	domain
AAA_28	PF13521.1	gi|408405671|ref|YP_006863654.1|	-	3.3e-06	27.1	0.0	0.011	15.7	0.0	2.7	2	0	0	2	2	2	2	AAA	domain
PhoH	PF02562.11	gi|408405671|ref|YP_006863654.1|	-	4.1e-06	26.1	0.6	0.041	13.1	0.1	2.4	2	0	0	2	2	2	2	PhoH-like	protein
NACHT	PF05729.7	gi|408405671|ref|YP_006863654.1|	-	5.8e-06	26.0	0.1	0.74	9.4	0.0	3.9	4	0	0	4	4	4	2	NACHT	domain
Mg_chelatase	PF01078.16	gi|408405671|ref|YP_006863654.1|	-	6.1e-06	25.5	1.8	0.033	13.3	0.0	2.6	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
Sigma54_activ_2	PF14532.1	gi|408405671|ref|YP_006863654.1|	-	2.1e-05	24.6	0.0	0.096	12.7	0.0	2.6	2	0	0	2	2	2	2	Sigma-54	interaction	domain
AAA_18	PF13238.1	gi|408405671|ref|YP_006863654.1|	-	2.6e-05	24.5	0.0	0.035	14.4	0.0	2.7	2	0	0	2	2	2	1	AAA	domain
AAA_24	PF13479.1	gi|408405671|ref|YP_006863654.1|	-	3.3e-05	23.5	0.1	0.021	14.3	0.0	2.5	2	0	0	2	2	2	1	AAA	domain
NB-ARC	PF00931.17	gi|408405671|ref|YP_006863654.1|	-	6.2e-05	21.9	0.1	0.09	11.6	0.0	2.4	2	0	0	2	2	2	2	NB-ARC	domain
DUF815	PF05673.8	gi|408405671|ref|YP_006863654.1|	-	8.4e-05	21.6	0.0	0.039	12.8	0.0	2.4	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF815)
ABC_tran	PF00005.22	gi|408405671|ref|YP_006863654.1|	-	0.0001	22.6	0.0	0.73	10.1	0.0	2.4	2	0	0	2	2	2	2	ABC	transporter
DUF2075	PF09848.4	gi|408405671|ref|YP_006863654.1|	-	0.00053	19.0	0.0	0.32	9.9	0.0	2.4	2	0	0	2	2	2	2	Uncharacterized	conserved	protein	(DUF2075)
SKI	PF01202.17	gi|408405671|ref|YP_006863654.1|	-	0.0007	19.5	0.0	0.49	10.2	0.0	2.9	3	0	0	3	3	3	1	Shikimate	kinase
AAA_3	PF07726.6	gi|408405671|ref|YP_006863654.1|	-	0.00072	19.1	0.0	0.38	10.3	0.0	2.5	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
NTPase_1	PF03266.10	gi|408405671|ref|YP_006863654.1|	-	0.0014	18.4	1.0	4	7.1	0.0	3.8	3	1	1	4	4	3	0	NTPase
ATP-synt_ab	PF00006.20	gi|408405671|ref|YP_006863654.1|	-	0.0019	17.7	0.1	1.3	8.4	0.0	2.9	3	0	0	3	3	3	1	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
AAA_30	PF13604.1	gi|408405671|ref|YP_006863654.1|	-	0.0023	17.5	0.1	2.3	7.7	0.0	2.7	2	0	0	2	2	2	1	AAA	domain
Parvo_NS1	PF01057.12	gi|408405671|ref|YP_006863654.1|	-	0.0024	16.7	0.1	0.25	10.1	0.0	2.2	2	0	0	2	2	2	1	Parvovirus	non-structural	protein	NS1
UPF0079	PF02367.12	gi|408405671|ref|YP_006863654.1|	-	0.0025	17.4	0.1	2.6	7.7	0.0	2.4	2	0	0	2	2	2	1	Uncharacterised	P-loop	hydrolase	UPF0079
AFG1_ATPase	PF03969.11	gi|408405671|ref|YP_006863654.1|	-	0.0028	16.5	0.1	1	8.1	0.1	2.8	2	1	0	2	2	2	1	AFG1-like	ATPase
T2SE	PF00437.15	gi|408405671|ref|YP_006863654.1|	-	0.0056	15.6	0.0	1.7	7.4	0.0	2.3	2	0	0	2	2	2	1	Type	II/IV	secretion	system	protein
ResIII	PF04851.10	gi|408405671|ref|YP_006863654.1|	-	0.0091	15.8	0.0	3.7	7.3	0.0	2.4	2	0	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
AAA_11	PF13086.1	gi|408405671|ref|YP_006863654.1|	-	0.016	14.8	0.0	0.85	9.1	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
Guanylate_kin	PF00625.16	gi|408405671|ref|YP_006863654.1|	-	0.029	13.7	0.2	22	4.4	0.0	3.5	2	1	1	3	3	3	0	Guanylate	kinase
KAP_NTPase	PF07693.9	gi|408405671|ref|YP_006863654.1|	-	0.036	13.0	0.0	1.9	7.4	0.0	2.6	2	1	1	3	3	3	0	KAP	family	P-loop	domain
AAA_29	PF13555.1	gi|408405671|ref|YP_006863654.1|	-	0.047	13.2	0.5	7.8	6.1	0.1	2.5	2	0	0	2	2	2	0	P-loop	containing	region	of	AAA	domain
PduV-EutP	PF10662.4	gi|408405671|ref|YP_006863654.1|	-	0.049	13.1	0.0	16	4.9	0.0	2.9	3	0	0	3	3	3	0	Ethanolamine	utilisation	-	propanediol	utilisation
DEAD	PF00270.24	gi|408405671|ref|YP_006863654.1|	-	0.071	12.5	3.0	9.1	5.7	0.1	3.6	3	2	1	5	5	3	0	DEAD/DEAH	box	helicase
Viral_helicase1	PF01443.13	gi|408405671|ref|YP_006863654.1|	-	0.078	12.4	0.0	3.8	6.9	0.0	2.3	2	0	0	2	2	2	0	Viral	(Superfamily	1)	RNA	helicase
CPT	PF07931.7	gi|408405671|ref|YP_006863654.1|	-	0.12	12.0	0.0	13	5.3	0.0	2.6	2	0	0	2	2	2	0	Chloramphenicol	phosphotransferase-like	protein
IPT	PF01745.11	gi|408405671|ref|YP_006863654.1|	-	0.15	11.1	0.2	10	5.1	0.0	2.4	2	0	0	2	2	2	0	Isopentenyl	transferase
DUF258	PF03193.11	gi|408405671|ref|YP_006863654.1|	-	0.16	11.1	0.0	9.2	5.4	0.0	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function,	DUF258
AAA_10	PF12846.2	gi|408405671|ref|YP_006863654.1|	-	0.16	11.3	0.2	24	4.2	0.1	3.2	2	2	0	2	2	2	0	AAA-like	domain
EXOSC1	PF10447.4	gi|408405672|ref|YP_006863655.1|	-	9.9e-06	25.4	0.1	8.6e-05	22.4	0.1	2.4	1	1	0	1	1	1	1	Exosome	component	EXOSC1/CSL4
ECR1_N	PF14382.1	gi|408405672|ref|YP_006863655.1|	-	2.9e-05	23.2	0.2	5.2e-05	22.4	0.1	1.5	1	0	0	1	1	1	1	Exosome	complex	exonuclease	RRP4	N-terminal	region
DNA_RNApol_7kD	PF03604.8	gi|408405672|ref|YP_006863655.1|	-	0.56	9.7	2.3	1.4	8.4	1.6	1.6	1	0	0	1	1	1	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
PDT	PF00800.13	gi|408405673|ref|YP_006863656.1|	-	8.5e-62	207.9	0.0	1.1e-61	207.5	0.0	1.1	1	0	0	1	1	1	1	Prephenate	dehydratase
ACT	PF01842.20	gi|408405673|ref|YP_006863656.1|	-	2.3e-08	33.3	0.0	4.2e-08	32.4	0.0	1.5	1	0	0	1	1	1	1	ACT	domain
Copper-bind	PF00127.15	gi|408405674|ref|YP_006863657.1|	-	1.5e-09	37.9	0.0	4.2e-09	36.5	0.0	1.8	1	0	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
Cupredoxin_1	PF13473.1	gi|408405674|ref|YP_006863657.1|	-	8.9e-07	28.7	0.0	2e-06	27.5	0.0	1.7	1	0	0	1	1	1	1	Cupredoxin-like	domain
MDM1	PF15501.1	gi|408405674|ref|YP_006863657.1|	-	0.6	8.9	5.3	0.74	8.6	3.7	1.0	1	0	0	1	1	1	0	Nuclear	protein	MDM1
WBP-1	PF11669.3	gi|408405675|ref|YP_006863658.1|	-	1.5	8.9	7.6	2.7	8.1	5.3	1.5	1	1	0	1	1	1	0	WW	domain-binding	protein	1
EMP24_GP25L	PF01105.19	gi|408405676|ref|YP_006863659.1|	-	0.0021	17.7	0.0	0.0028	17.3	0.0	1.2	1	0	0	1	1	1	1	emp24/gp25L/p24	family/GOLD
A2M_N	PF01835.14	gi|408405676|ref|YP_006863659.1|	-	0.12	12.6	0.0	0.17	12.1	0.0	1.3	1	0	0	1	1	1	0	MG2	domain
BNR_2	PF13088.1	gi|408405677|ref|YP_006863660.1|	-	0.00017	20.9	0.8	0.21	10.8	0.0	3.1	1	1	1	2	2	2	2	BNR	repeat-like	domain
Cofilin_ADF	PF00241.15	gi|408405677|ref|YP_006863660.1|	-	0.04	13.8	0.0	0.12	12.3	0.0	1.7	1	0	0	1	1	1	0	Cofilin/tropomyosin-type	actin-binding	protein
BNR	PF02012.15	gi|408405677|ref|YP_006863660.1|	-	0.68	9.9	3.5	46	4.4	0.0	4.0	3	0	0	3	3	3	0	BNR/Asp-box	repeat
Pap_E4	PF02711.9	gi|408405677|ref|YP_006863660.1|	-	2.4	9.0	3.9	2.3	9.0	0.7	2.4	2	0	0	2	2	2	0	E4	protein
IMPDH	PF00478.20	gi|408405679|ref|YP_006863662.1|	-	8.2e-140	465.6	6.1	9.4e-140	465.4	4.2	1.0	1	0	0	1	1	1	1	IMP	dehydrogenase	/	GMP	reductase	domain
CBS	PF00571.23	gi|408405679|ref|YP_006863662.1|	-	4.5e-28	96.7	0.5	1.3e-12	47.2	0.0	2.9	2	0	0	2	2	2	2	CBS	domain
NMO	PF03060.10	gi|408405679|ref|YP_006863662.1|	-	4.6e-15	55.5	10.0	1.1e-10	41.1	3.9	2.5	1	1	1	2	2	2	2	Nitronate	monooxygenase
His_biosynth	PF00977.16	gi|408405679|ref|YP_006863662.1|	-	5e-08	32.4	1.5	0.00023	20.4	0.1	2.5	1	1	1	2	2	2	2	Histidine	biosynthesis	protein
FMN_dh	PF01070.13	gi|408405679|ref|YP_006863662.1|	-	7.5e-08	31.5	10.7	1.3e-07	30.8	5.3	2.6	3	1	0	3	3	3	1	FMN-dependent	dehydrogenase
DHO_dh	PF01180.16	gi|408405679|ref|YP_006863662.1|	-	4.3e-05	22.6	4.1	0.00025	20.0	0.3	2.5	1	1	1	2	2	2	1	Dihydroorotate	dehydrogenase
PEP_mutase	PF13714.1	gi|408405679|ref|YP_006863662.1|	-	0.0016	17.7	1.8	0.013	14.7	0.1	2.4	2	0	0	2	2	2	1	Phosphoenolpyruvate	phosphomutase
IGPS	PF00218.16	gi|408405679|ref|YP_006863662.1|	-	0.0025	16.9	0.2	1.5	7.8	0.0	2.8	3	0	0	3	3	3	2	Indole-3-glycerol	phosphate	synthase
Radical_SAM	PF04055.16	gi|408405679|ref|YP_006863662.1|	-	0.0052	16.9	0.0	4.1	7.5	0.0	2.7	1	1	1	2	2	2	2	Radical	SAM	superfamily
ThiG	PF05690.9	gi|408405679|ref|YP_006863662.1|	-	0.0086	15.1	2.5	0.016	14.2	0.4	2.3	1	1	1	2	2	2	1	Thiazole	biosynthesis	protein	ThiG
DUF561	PF04481.7	gi|408405679|ref|YP_006863662.1|	-	0.0099	14.8	3.7	0.39	9.6	0.5	2.3	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF561)
PcrB	PF01884.12	gi|408405679|ref|YP_006863662.1|	-	0.051	12.8	11.3	0.83	8.8	0.2	3.7	3	2	1	4	4	4	0	PcrB	family
YSIRK_signal	PF04650.12	gi|408405679|ref|YP_006863662.1|	-	1.2	8.8	3.7	2.9	7.5	2.6	1.7	1	0	0	1	1	1	0	YSIRK	type	signal	peptide
Pterin_bind	PF00809.17	gi|408405680|ref|YP_006863663.1|	-	1.1e-37	129.4	1.4	7e-37	126.8	1.0	2.0	1	1	0	1	1	1	1	Pterin	binding	enzyme
Abhydrolase_6	PF12697.2	gi|408405681|ref|YP_006863664.1|	-	2.9e-35	122.1	0.0	3.4e-35	121.9	0.0	1.0	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_1	PF00561.15	gi|408405681|ref|YP_006863664.1|	-	5.3e-22	78.4	0.0	7.4e-21	74.7	0.0	2.0	1	1	0	1	1	1	1	alpha/beta	hydrolase	fold
Abhydrolase_5	PF12695.2	gi|408405681|ref|YP_006863664.1|	-	7.2e-16	58.2	0.0	3.5e-15	56.0	0.0	1.8	1	1	0	1	1	1	1	Alpha/beta	hydrolase	family
Ndr	PF03096.9	gi|408405681|ref|YP_006863664.1|	-	4e-09	35.3	0.0	5.5e-09	34.9	0.0	1.1	1	0	0	1	1	1	1	Ndr	family
PGAP1	PF07819.8	gi|408405681|ref|YP_006863664.1|	-	2.7e-05	23.8	0.0	3.6e-05	23.4	0.0	1.2	1	0	0	1	1	1	1	PGAP1-like	protein
Peptidase_S9	PF00326.16	gi|408405681|ref|YP_006863664.1|	-	4.7e-05	22.7	0.0	0.00037	19.7	0.0	2.1	2	0	0	2	2	2	1	Prolyl	oligopeptidase	family
Hydrolase_4	PF12146.3	gi|408405681|ref|YP_006863664.1|	-	0.00023	20.9	0.1	0.00057	19.6	0.0	1.7	2	0	0	2	2	1	1	Putative	lysophospholipase
BAAT_C	PF08840.6	gi|408405681|ref|YP_006863664.1|	-	0.00044	20.0	0.0	0.00075	19.2	0.0	1.3	1	0	0	1	1	1	1	BAAT	/	Acyl-CoA	thioester	hydrolase	C	terminal
Thioesterase	PF00975.15	gi|408405681|ref|YP_006863664.1|	-	0.00062	20.0	0.0	0.00075	19.7	0.0	1.2	1	0	0	1	1	1	1	Thioesterase	domain
Lipase_3	PF01764.20	gi|408405681|ref|YP_006863664.1|	-	0.00069	19.2	0.0	0.0013	18.4	0.0	1.5	1	0	0	1	1	1	1	Lipase	(class	3)
Abhydrolase_8	PF06259.7	gi|408405681|ref|YP_006863664.1|	-	0.0016	17.9	0.0	0.0034	16.9	0.0	1.4	1	0	0	1	1	1	1	Alpha/beta	hydrolase
UPF0227	PF05728.7	gi|408405681|ref|YP_006863664.1|	-	0.0025	17.5	0.0	0.0076	15.9	0.0	1.9	1	1	0	1	1	1	1	Uncharacterised	protein	family	(UPF0227)
DUF2305	PF10230.4	gi|408405681|ref|YP_006863664.1|	-	0.0032	16.9	0.2	0.0088	15.4	0.1	1.7	1	1	0	1	1	1	1	Uncharacterised	conserved	protein	(DUF2305)
Esterase	PF00756.15	gi|408405681|ref|YP_006863664.1|	-	0.0034	16.8	0.0	0.0081	15.6	0.0	1.4	1	1	0	1	1	1	1	Putative	esterase
DLH	PF01738.13	gi|408405681|ref|YP_006863664.1|	-	0.009	15.3	0.0	0.17	11.1	0.0	2.2	2	0	0	2	2	2	1	Dienelactone	hydrolase	family
Ser_hydrolase	PF06821.8	gi|408405681|ref|YP_006863664.1|	-	0.012	15.1	0.0	0.037	13.6	0.0	1.7	2	0	0	2	2	2	0	Serine	hydrolase
DUF3530	PF12048.3	gi|408405681|ref|YP_006863664.1|	-	0.015	14.2	0.0	0.021	13.7	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3530)
DUF1057	PF06342.7	gi|408405681|ref|YP_006863664.1|	-	0.019	13.8	0.3	0.042	12.6	0.1	1.6	2	1	0	2	2	2	0	Alpha/beta	hydrolase	of	unknown	function	(DUF1057)
Peptidase_S15	PF02129.13	gi|408405681|ref|YP_006863664.1|	-	0.021	14.2	0.0	0.027	13.9	0.0	1.4	1	1	0	1	1	1	0	X-Pro	dipeptidyl-peptidase	(S15	family)
DUF2048	PF09752.4	gi|408405681|ref|YP_006863664.1|	-	0.043	12.6	0.0	0.077	11.8	0.0	1.3	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2048)
Abhydrolase_3	PF07859.8	gi|408405681|ref|YP_006863664.1|	-	0.048	13.2	0.0	0.068	12.7	0.0	1.2	1	0	0	1	1	1	0	alpha/beta	hydrolase	fold
DUF915	PF06028.6	gi|408405681|ref|YP_006863664.1|	-	0.061	12.4	0.1	0.12	11.4	0.0	1.5	2	0	0	2	2	1	0	Alpha/beta	hydrolase	of	unknown	function	(DUF915)
DUF676	PF05057.9	gi|408405681|ref|YP_006863664.1|	-	0.091	12.0	0.1	0.16	11.2	0.0	1.4	1	0	0	1	1	1	0	Putative	serine	esterase	(DUF676)
Patatin	PF01734.17	gi|408405681|ref|YP_006863664.1|	-	0.15	11.9	0.0	0.22	11.4	0.0	1.2	1	0	0	1	1	1	0	Patatin-like	phospholipase
PvlArgDC	PF01862.11	gi|408405682|ref|YP_006863665.1|	-	1.5e-61	206.8	0.0	1.6e-61	206.6	0.0	1.0	1	0	0	1	1	1	1	Pyruvoyl-dependent	arginine	decarboxylase	(PvlArgDC)
IF3_N	PF05198.11	gi|408405682|ref|YP_006863665.1|	-	0.13	12.2	0.1	0.26	11.2	0.0	1.5	2	0	0	2	2	2	0	Translation	initiation	factor	IF-3,	N-terminal	domain
MliC	PF09864.4	gi|408405683|ref|YP_006863666.1|	-	0.0021	17.7	0.0	0.0037	16.9	0.0	1.3	1	0	0	1	1	1	1	Membrane-bound	lysozyme-inhibitor	of	c-type	lysozyme
EutN_CcmL	PF03319.8	gi|408405683|ref|YP_006863666.1|	-	0.0065	16.8	0.4	1.1	9.7	0.2	2.3	2	0	0	2	2	2	1	Ethanolamine	utilisation	protein	EutN/carboxysome
A2M_N	PF01835.14	gi|408405683|ref|YP_006863666.1|	-	0.018	15.2	0.0	0.03	14.5	0.0	1.3	1	0	0	1	1	1	0	MG2	domain
CARDB	PF07705.6	gi|408405683|ref|YP_006863666.1|	-	0.052	13.5	0.0	0.1	12.6	0.0	1.5	1	1	0	1	1	1	0	CARDB
ATG27	PF09451.5	gi|408405683|ref|YP_006863666.1|	-	0.053	12.7	0.0	0.073	12.2	0.0	1.2	1	0	0	1	1	1	0	Autophagy-related	protein	27
DUF11	PF01345.13	gi|408405683|ref|YP_006863666.1|	-	0.086	12.8	0.1	0.17	11.9	0.1	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	DUF11
ADH_N	PF08240.7	gi|408405685|ref|YP_006863668.1|	-	8.3e-30	102.7	1.6	3e-29	100.9	0.5	2.1	2	0	0	2	2	2	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_N_assoc	PF13823.1	gi|408405685|ref|YP_006863668.1|	-	1.6e-09	37.2	3.7	3.9e-09	35.9	2.6	1.7	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-associated
ADH_zinc_N	PF00107.21	gi|408405685|ref|YP_006863668.1|	-	3.2e-06	26.7	0.1	1.1e-05	25.0	0.0	1.9	2	0	0	2	2	2	1	Zinc-binding	dehydrogenase
HI0933_like	PF03486.9	gi|408405685|ref|YP_006863668.1|	-	0.0025	16.3	0.0	0.0035	15.8	0.0	1.1	1	0	0	1	1	1	1	HI0933-like	protein
AlaDh_PNT_C	PF01262.16	gi|408405685|ref|YP_006863668.1|	-	0.031	13.8	0.0	0.051	13.1	0.0	1.3	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
ADH_zinc_N_2	PF13602.1	gi|408405685|ref|YP_006863668.1|	-	0.051	14.4	0.0	0.11	13.4	0.0	1.6	1	1	0	1	1	1	0	Zinc-binding	dehydrogenase
DUF892	PF05974.7	gi|408405686|ref|YP_006863669.1|	-	5.2e-14	52.3	12.2	2.2e-13	50.3	8.4	1.8	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF892)
DUF2383	PF09537.5	gi|408405686|ref|YP_006863669.1|	-	0.42	10.8	5.1	1.3	9.3	0.3	2.6	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF2383)
FUSC	PF04632.7	gi|408405686|ref|YP_006863669.1|	-	0.95	7.8	3.4	1.1	7.5	2.4	1.1	1	0	0	1	1	1	0	Fusaric	acid	resistance	protein	family
Ferritin	PF00210.19	gi|408405689|ref|YP_006863672.1|	-	6.5e-26	90.7	1.8	7.9e-26	90.5	1.3	1.0	1	0	0	1	1	1	1	Ferritin-like	domain
Peptidase_M50	PF02163.17	gi|408405690|ref|YP_006863673.1|	-	5.5e-21	74.4	7.8	4.4e-18	64.9	5.1	2.6	1	1	0	1	1	1	1	Peptidase	family	M50
CBS	PF00571.23	gi|408405690|ref|YP_006863673.1|	-	1.1e-17	63.5	1.2	2.2e-08	33.7	0.0	2.5	2	0	0	2	2	2	2	CBS	domain
Peptidase_M50B	PF13398.1	gi|408405690|ref|YP_006863673.1|	-	4.1e-05	23.0	7.2	0.012	15.0	1.1	2.7	2	1	0	2	2	2	2	Peptidase	M50B-like
DUF3267	PF11667.3	gi|408405690|ref|YP_006863673.1|	-	0.024	14.8	3.1	0.09	12.9	0.3	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3267)
CoA_binding_3	PF13727.1	gi|408405690|ref|YP_006863673.1|	-	1.3	8.8	7.1	0.33	10.7	0.4	2.5	2	0	0	2	2	2	0	CoA-binding	domain
zf-C2H2_4	PF13894.1	gi|408405691|ref|YP_006863674.1|	-	8.1e-05	22.6	0.1	0.00017	21.6	0.0	1.6	1	0	0	1	1	1	1	C2H2-type	zinc	finger
zf-met	PF12874.2	gi|408405691|ref|YP_006863674.1|	-	0.0035	17.5	0.3	0.0091	16.1	0.0	1.8	2	0	0	2	2	2	1	Zinc-finger	of	C2H2	type
zf-C2H2_jaz	PF12171.3	gi|408405691|ref|YP_006863674.1|	-	0.0066	16.5	0.4	0.013	15.6	0.1	1.6	2	0	0	2	2	2	1	Zinc-finger	double-stranded	RNA-binding
zf-C2H2_2	PF12756.2	gi|408405691|ref|YP_006863674.1|	-	0.0094	16.0	0.0	0.011	15.8	0.0	1.2	1	0	0	1	1	1	1	C2H2	type	zinc-finger	(2	copies)
Glyco_transf_10	PF00852.14	gi|408405691|ref|YP_006863674.1|	-	0.02	13.4	0.0	0.025	13.1	0.0	1.1	1	0	0	1	1	1	0	Glycosyltransferase	family	10	(fucosyltransferase)
Rad50_zn_hook	PF04423.9	gi|408405691|ref|YP_006863674.1|	-	0.02	14.3	0.1	0.067	12.6	0.1	2.0	1	1	0	1	1	1	0	Rad50	zinc	hook	motif
Lactamase_B	PF00753.22	gi|408405694|ref|YP_006863677.1|	-	0.015	14.9	0.0	0.02	14.5	0.0	1.1	1	0	0	1	1	1	0	Metallo-beta-lactamase	superfamily
DUF1326	PF07040.6	gi|408405695|ref|YP_006863678.1|	-	5.1e-30	104.6	0.5	5.9e-30	104.3	0.3	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1326)
zf-C2H2	PF00096.21	gi|408405697|ref|YP_006863680.1|	-	0.0032	17.7	0.2	0.0046	17.2	0.1	1.3	1	0	0	1	1	1	1	Zinc	finger,	C2H2	type
zf-Mss51	PF13824.1	gi|408405697|ref|YP_006863680.1|	-	0.0051	16.6	0.1	0.0052	16.6	0.1	1.1	1	0	0	1	1	1	1	Zinc-finger	of	mitochondrial	splicing	suppressor	51
CpXC	PF14353.1	gi|408405697|ref|YP_006863680.1|	-	0.01	15.7	0.0	0.01	15.7	0.0	1.1	1	0	0	1	1	1	0	CpXC	protein
zinc_ribbon_5	PF13719.1	gi|408405697|ref|YP_006863680.1|	-	0.058	12.9	0.0	0.087	12.4	0.0	1.3	1	0	0	1	1	1	0	zinc-ribbon	domain
zinc_ribbon_4	PF13717.1	gi|408405697|ref|YP_006863680.1|	-	0.089	12.5	0.0	0.12	12.0	0.0	1.3	1	0	0	1	1	1	0	zinc-ribbon	domain
zf-H2C2_2	PF13465.1	gi|408405697|ref|YP_006863680.1|	-	0.1	12.9	0.7	1.4	9.3	0.2	2.2	2	0	0	2	2	2	0	Zinc-finger	double	domain
DUF678	PF05077.7	gi|408405697|ref|YP_006863680.1|	-	0.15	12.0	0.1	0.75	9.8	0.1	1.9	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF678)
Robl_LC7	PF03259.12	gi|408405699|ref|YP_006863682.1|	-	0.036	13.6	0.0	0.053	13.0	0.0	1.3	1	0	0	1	1	1	0	Roadblock/LC7	domain
Ecl1	PF12855.2	gi|408405700|ref|YP_006863683.1|	-	0.00012	21.2	0.0	0.00015	21.0	0.0	1.1	1	0	0	1	1	1	1	Life-span	regulatory	factor
zf-FCS	PF06467.9	gi|408405700|ref|YP_006863683.1|	-	0.00088	18.8	0.5	0.0032	17.0	0.3	1.8	1	1	0	1	1	1	1	MYM-type	Zinc	finger	with	FCS	sequence	motif
DUF2116	PF09889.4	gi|408405700|ref|YP_006863683.1|	-	0.081	12.7	0.6	0.94	9.3	0.0	2.0	2	0	0	2	2	2	0	Uncharacterized	protein	containing	a	Zn-ribbon	(DUF2116)
Zn_Tnp_IS1595	PF12760.2	gi|408405702|ref|YP_006863685.1|	-	0.038	13.7	1.5	0.053	13.3	1.0	1.2	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
DUF1660	PF07874.6	gi|408405702|ref|YP_006863685.1|	-	0.11	12.8	0.1	0.11	12.8	0.1	1.1	1	0	0	1	1	1	0	Prophage	protein	(DUF1660)
zf-CHY	PF05495.7	gi|408405702|ref|YP_006863685.1|	-	0.13	12.3	1.3	0.15	12.2	0.9	1.2	1	0	0	1	1	1	0	CHY	zinc	finger
Rdx	PF10262.4	gi|408405702|ref|YP_006863685.1|	-	0.14	12.1	0.6	2.1	8.4	0.1	2.2	1	1	1	2	2	2	0	Rdx	family
OrfB_Zn_ribbon	PF07282.6	gi|408405702|ref|YP_006863685.1|	-	0.15	11.6	1.2	0.2	11.3	0.8	1.2	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
C1_3	PF07649.7	gi|408405702|ref|YP_006863685.1|	-	0.19	11.7	3.9	0.49	10.4	2.7	1.7	1	1	0	1	1	1	0	C1-like	domain
Zn-ribbon_8	PF09723.5	gi|408405702|ref|YP_006863685.1|	-	0.26	11.2	2.4	0.75	9.8	1.2	1.8	1	1	1	2	2	2	0	Zinc	ribbon	domain
zf-ribbon_3	PF13248.1	gi|408405702|ref|YP_006863685.1|	-	1.4	8.1	5.2	4.6	6.5	3.6	1.8	1	1	0	1	1	1	0	zinc-ribbon	domain
PhnA_Zn_Ribbon	PF08274.7	gi|408405702|ref|YP_006863685.1|	-	1.9	8.3	5.3	23	4.8	3.9	2.1	1	1	1	2	2	2	0	PhnA	Zinc-Ribbon
Glyoxalase	PF00903.20	gi|408405703|ref|YP_006863686.1|	-	7.5e-25	87.3	1.1	1.7e-12	47.4	0.0	2.2	2	0	0	2	2	2	2	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_2	PF12681.2	gi|408405703|ref|YP_006863686.1|	-	1.4e-22	80.3	0.1	3e-11	43.8	0.0	2.1	2	0	0	2	2	2	2	Glyoxalase-like	domain
Glyoxalase_4	PF13669.1	gi|408405703|ref|YP_006863686.1|	-	9.4e-09	35.2	0.0	0.0051	16.8	0.0	2.7	2	1	0	2	2	2	2	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_3	PF13468.1	gi|408405703|ref|YP_006863686.1|	-	0.0095	15.8	0.2	0.65	9.8	0.2	2.9	2	1	1	3	3	3	1	Glyoxalase-like	domain
TPR_1	PF00515.23	gi|408405703|ref|YP_006863686.1|	-	0.01	15.4	0.0	0.064	12.8	0.0	2.1	2	0	0	2	2	2	0	Tetratricopeptide	repeat
CppA_N	PF14506.1	gi|408405703|ref|YP_006863686.1|	-	0.012	15.2	0.0	1	9.0	0.0	2.2	2	0	0	2	2	2	0	CppA	N-terminal
TPR_2	PF07719.12	gi|408405703|ref|YP_006863686.1|	-	0.066	13.1	0.0	0.22	11.5	0.0	1.9	2	0	0	2	2	2	0	Tetratricopeptide	repeat
ADH_zinc_N	PF00107.21	gi|408405704|ref|YP_006863687.1|	-	6.2e-39	132.5	1.5	1.1e-38	131.6	1.1	1.5	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_zinc_N_2	PF13602.1	gi|408405704|ref|YP_006863687.1|	-	1.5e-21	77.6	0.3	3.8e-21	76.2	0.0	1.8	2	0	0	2	2	2	1	Zinc-binding	dehydrogenase
ADH_N	PF08240.7	gi|408405704|ref|YP_006863687.1|	-	1.1e-19	70.2	5.6	5.7e-19	67.8	3.9	2.0	1	1	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
Eno-Rase_NADH_b	PF12242.3	gi|408405704|ref|YP_006863687.1|	-	0.0047	16.6	1.1	0.013	15.2	0.8	1.7	1	0	0	1	1	1	1	NAD(P)H	binding	domain	of	trans-2-enoyl-CoA	reductase
Pterin_bind	PF00809.17	gi|408405704|ref|YP_006863687.1|	-	0.026	13.8	0.3	0.3	10.4	0.0	2.4	1	1	1	2	2	2	0	Pterin	binding	enzyme
TrkA_N	PF02254.13	gi|408405704|ref|YP_006863687.1|	-	0.036	14.0	0.0	0.083	12.9	0.0	1.6	1	0	0	1	1	1	0	TrkA-N	domain
EutN_CcmL	PF03319.8	gi|408405704|ref|YP_006863687.1|	-	0.052	13.9	0.7	0.97	9.8	0.0	3.0	3	1	0	3	3	3	0	Ethanolamine	utilisation	protein	EutN/carboxysome
tRNA-synt_1	PF00133.17	gi|408405705|ref|YP_006863688.1|	-	3.4e-117	391.9	0.0	2.5e-116	389.1	0.0	2.0	1	1	0	1	1	1	1	tRNA	synthetases	class	I	(I,	L,	M	and	V)
Anticodon_1	PF08264.8	gi|408405705|ref|YP_006863688.1|	-	2.6e-32	111.6	1.6	3.4e-32	111.3	0.4	1.8	2	0	0	2	2	2	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1g	PF09334.6	gi|408405705|ref|YP_006863688.1|	-	3.7e-27	94.9	0.1	1.4e-13	50.2	0.0	3.4	3	1	0	3	3	3	3	tRNA	synthetases	class	I	(M)
tRNA-synt_1_2	PF13603.1	gi|408405705|ref|YP_006863688.1|	-	2.6e-05	23.6	0.0	0.014	14.7	0.0	2.7	1	1	1	2	2	2	2	Leucyl-tRNA	synthetase,	Domain	2
zf-TFIIB	PF13453.1	gi|408405705|ref|YP_006863688.1|	-	0.006	15.7	0.7	9.3	5.5	0.0	3.4	3	0	0	3	3	3	2	Transcription	factor	zinc-finger
tRNA-synt_1e	PF01406.14	gi|408405705|ref|YP_006863688.1|	-	0.061	12.4	0.0	0.44	9.6	0.0	2.1	2	0	0	2	2	2	0	tRNA	synthetases	class	I	(C)	catalytic	domain
zf-ribbon_3	PF13248.1	gi|408405705|ref|YP_006863688.1|	-	1	8.6	7.6	2.2	7.5	0.1	2.6	2	0	0	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_2	PF13240.1	gi|408405705|ref|YP_006863688.1|	-	4.2	6.9	8.9	5.3	6.6	0.1	2.6	2	0	0	2	2	2	0	zinc-ribbon	domain
Herpes_U5	PF05999.6	gi|408405706|ref|YP_006863689.1|	-	0.025	13.1	0.2	0.038	12.6	0.1	1.2	1	0	0	1	1	1	0	Herpesvirus	U5-like	family
CoA_binding_3	PF13727.1	gi|408405707|ref|YP_006863690.1|	-	0.0069	16.2	1.1	0.0069	16.2	0.8	1.7	2	0	0	2	2	2	1	CoA-binding	domain
Rhomboid	PF01694.17	gi|408405707|ref|YP_006863690.1|	-	1.7	8.6	10.9	2.4	8.1	7.3	1.5	1	1	0	1	1	1	0	Rhomboid	family
MAF_flag10	PF01973.13	gi|408405708|ref|YP_006863691.1|	-	1.2e-39	135.5	0.2	1.5e-39	135.1	0.1	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF115
TPK_catalytic	PF04263.11	gi|408405708|ref|YP_006863691.1|	-	0.0046	16.5	0.3	0.06	12.9	0.1	2.2	1	1	0	2	2	2	1	Thiamin	pyrophosphokinase,	catalytic	domain
CST-I	PF06002.7	gi|408405708|ref|YP_006863691.1|	-	0.072	12.3	0.3	1	8.6	0.0	2.3	2	1	0	2	2	2	0	Alpha-2,3-sialyltransferase	(CST-I)
Peptidase_M27	PF01742.12	gi|408405708|ref|YP_006863691.1|	-	0.084	11.7	0.0	0.13	11.0	0.0	1.2	1	0	0	1	1	1	0	Clostridial	neurotoxin	zinc	protease
UPF0228	PF05727.6	gi|408405708|ref|YP_006863691.1|	-	0.12	12.1	0.3	0.24	11.1	0.2	1.5	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0228)
Rotavirus_VP1	PF12289.3	gi|408405709|ref|YP_006863692.1|	-	0.0071	15.9	0.0	0.016	14.8	0.0	1.5	1	0	0	1	1	1	1	Rotavirus	VP1	structural	protein
A2M_N	PF01835.14	gi|408405711|ref|YP_006863694.1|	-	0.0031	17.7	0.2	0.0078	16.4	0.1	1.7	1	1	1	2	2	2	1	MG2	domain
DUF1573	PF07610.6	gi|408405711|ref|YP_006863694.1|	-	0.11	12.1	0.8	0.4	10.3	0.0	2.3	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF1573)
DDE_Tnp_1	PF01609.16	gi|408405712|ref|YP_006863695.1|	-	0.0042	16.6	0.2	0.0078	15.7	0.1	1.5	1	1	0	1	1	1	1	Transposase	DDE	domain
DUF1815	PF08844.5	gi|408405712|ref|YP_006863695.1|	-	0.018	14.6	0.2	0.049	13.2	0.0	1.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1815)
DUF3108	PF11306.3	gi|408405713|ref|YP_006863696.1|	-	0.0056	16.3	0.0	0.37	10.4	0.0	2.1	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF3108)
HTH_45	PF14947.1	gi|408405714|ref|YP_006863697.1|	-	1.7e-06	27.7	0.1	2.1e-06	27.4	0.0	1.0	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF4364	PF14277.1	gi|408405714|ref|YP_006863697.1|	-	5e-05	22.9	0.0	5.4e-05	22.8	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4364)
Ribosomal_S19e	PF01090.14	gi|408405714|ref|YP_006863697.1|	-	0.0083	15.5	0.1	0.0085	15.5	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S19e
Mrr_N	PF14338.1	gi|408405714|ref|YP_006863697.1|	-	0.016	15.2	0.0	0.019	15.0	0.0	1.3	1	0	0	1	1	1	0	Mrr	N-terminal	domain
PadR	PF03551.9	gi|408405714|ref|YP_006863697.1|	-	0.019	14.6	0.0	0.023	14.4	0.0	1.2	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
DUF2084	PF09857.4	gi|408405714|ref|YP_006863697.1|	-	0.064	12.9	0.0	0.076	12.7	0.0	1.1	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2084)
HTH_27	PF13463.1	gi|408405714|ref|YP_006863697.1|	-	0.071	13.4	0.0	0.093	13.0	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HATPase_c	PF02518.21	gi|408405716|ref|YP_006863699.1|	-	2.6e-26	91.5	0.1	5.8e-26	90.3	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.20	gi|408405716|ref|YP_006863699.1|	-	8.4e-09	35.3	0.0	1.8e-08	34.2	0.0	1.6	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_5	PF14501.1	gi|408405716|ref|YP_006863699.1|	-	0.00087	18.9	0.0	0.0021	17.7	0.0	1.6	1	0	0	1	1	1	1	GHKL	domain
HATPase_c_3	PF13589.1	gi|408405716|ref|YP_006863699.1|	-	0.0051	16.4	0.0	0.011	15.4	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PLDc_2	PF13091.1	gi|408405716|ref|YP_006863699.1|	-	0.01	15.5	0.2	0.077	12.7	0.1	2.2	2	0	0	2	2	2	0	PLD-like	domain
HATPase_c_2	PF13581.1	gi|408405716|ref|YP_006863699.1|	-	0.025	14.3	0.0	0.054	13.2	0.0	1.6	1	0	0	1	1	1	0	Histidine	kinase-like	ATPase	domain
DUF892	PF05974.7	gi|408405717|ref|YP_006863700.1|	-	3.7e-07	30.0	0.2	6.1e-07	29.3	0.2	1.4	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF892)
MerR-DNA-bind	PF09278.6	gi|408405717|ref|YP_006863700.1|	-	0.0057	17.0	1.9	0.0091	16.3	1.3	1.5	1	1	0	1	1	1	1	MerR,	DNA	binding
Tektin	PF03148.9	gi|408405717|ref|YP_006863700.1|	-	0.0066	15.0	0.4	0.0088	14.6	0.3	1.1	1	0	0	1	1	1	1	Tektin	family
Ferritin	PF00210.19	gi|408405717|ref|YP_006863700.1|	-	0.0099	15.6	0.7	0.028	14.1	0.4	1.6	1	1	1	2	2	2	2	Ferritin-like	domain
DUF2383	PF09537.5	gi|408405717|ref|YP_006863700.1|	-	0.013	15.7	0.2	0.017	15.3	0.2	1.3	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF2383)
Coat_F	PF07875.7	gi|408405717|ref|YP_006863700.1|	-	0.022	14.8	0.1	0.038	14.1	0.1	1.3	1	0	0	1	1	1	0	Coat	F	domain
DUF4164	PF13747.1	gi|408405717|ref|YP_006863700.1|	-	0.037	14.1	2.8	0.063	13.4	1.9	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4164)
DUF3435	PF11917.3	gi|408405717|ref|YP_006863700.1|	-	0.069	11.8	0.3	0.076	11.7	0.2	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3435)
DUF892	PF05974.7	gi|408405718|ref|YP_006863701.1|	-	1.5e-05	24.8	0.0	1.7e-05	24.6	0.0	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF892)
Abhydrolase_2	PF02230.11	gi|408405722|ref|YP_006863705.1|	-	2.8e-11	43.2	0.0	1.2e-10	41.1	0.0	1.8	1	1	0	1	1	1	1	Phospholipase/Carboxylesterase
Abhydrolase_5	PF12695.2	gi|408405722|ref|YP_006863705.1|	-	2.9e-09	36.8	0.0	5.3e-09	35.9	0.0	1.4	1	1	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_6	PF12697.2	gi|408405722|ref|YP_006863705.1|	-	1.2e-08	35.1	0.1	2.1e-05	24.5	0.2	2.2	1	1	1	2	2	2	2	Alpha/beta	hydrolase	family
Peptidase_S9	PF00326.16	gi|408405722|ref|YP_006863705.1|	-	1.7e-06	27.4	0.0	0.037	13.2	0.0	2.9	2	1	1	3	3	3	2	Prolyl	oligopeptidase	family
DLH	PF01738.13	gi|408405722|ref|YP_006863705.1|	-	1.2e-05	24.7	0.0	1.8e-05	24.1	0.0	1.2	1	0	0	1	1	1	1	Dienelactone	hydrolase	family
Abhydrolase_1	PF00561.15	gi|408405722|ref|YP_006863705.1|	-	8.6e-05	22.1	0.0	0.0077	15.8	0.0	2.1	1	1	1	2	2	2	2	alpha/beta	hydrolase	fold
Abhydrolase_3	PF07859.8	gi|408405722|ref|YP_006863705.1|	-	0.0014	18.2	0.0	0.0021	17.6	0.0	1.2	1	0	0	1	1	1	1	alpha/beta	hydrolase	fold
Abhydrolase_4	PF08386.5	gi|408405722|ref|YP_006863705.1|	-	0.04	13.8	0.0	0.12	12.2	0.0	1.7	2	0	0	2	2	2	0	TAP-like	protein
DUF915	PF06028.6	gi|408405722|ref|YP_006863705.1|	-	0.11	11.5	0.0	30	3.6	0.0	2.8	3	0	0	3	3	3	0	Alpha/beta	hydrolase	of	unknown	function	(DUF915)
Glyoxalase	PF00903.20	gi|408405723|ref|YP_006863706.1|	-	4.4e-26	91.3	1.3	2.4e-15	56.6	0.1	2.5	2	1	0	2	2	2	2	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_2	PF12681.2	gi|408405723|ref|YP_006863706.1|	-	2.7e-10	40.7	0.0	6.1e-09	36.4	0.0	2.2	2	0	0	2	2	2	1	Glyoxalase-like	domain
Glyoxalase_4	PF13669.1	gi|408405723|ref|YP_006863706.1|	-	0.0058	16.6	0.1	0.89	9.5	0.0	3.5	1	1	0	2	2	2	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
DUF21	PF01595.15	gi|408405724|ref|YP_006863707.1|	-	4e-48	163.1	5.6	5.6e-48	162.6	3.9	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF21
CBS	PF00571.23	gi|408405724|ref|YP_006863707.1|	-	1e-19	70.0	0.6	1e-08	34.8	0.0	2.4	2	0	0	2	2	2	2	CBS	domain
CorC_HlyC	PF03471.12	gi|408405724|ref|YP_006863707.1|	-	2.1e-18	65.8	0.3	2.1e-18	65.8	0.2	2.1	2	0	0	2	2	2	1	Transporter	associated	domain
DUF1108	PF06531.6	gi|408405724|ref|YP_006863707.1|	-	0.037	14.1	0.4	0.12	12.4	0.1	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1108)
Spc42p	PF11544.3	gi|408405725|ref|YP_006863708.1|	-	0.57	10.1	2.9	9	6.3	0.2	2.5	2	0	0	2	2	2	0	Spindle	pole	body	component	Spc42p
GATase	PF00117.23	gi|408405726|ref|YP_006863709.1|	-	1.6e-43	148.4	0.0	2.3e-43	147.9	0.0	1.3	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
GMP_synt_C	PF00958.17	gi|408405726|ref|YP_006863709.1|	-	4.3e-32	109.6	0.0	9.5e-32	108.5	0.0	1.6	1	0	0	1	1	1	1	GMP	synthase	C	terminal	domain
NAD_synthase	PF02540.12	gi|408405726|ref|YP_006863709.1|	-	3.7e-12	45.6	0.4	1.5e-06	27.3	0.1	2.3	2	0	0	2	2	2	2	NAD	synthase
Peptidase_C26	PF07722.8	gi|408405726|ref|YP_006863709.1|	-	1.9e-11	43.8	0.0	2.4e-10	40.2	0.0	2.4	1	1	0	1	1	1	1	Peptidase	C26
Asn_synthase	PF00733.16	gi|408405726|ref|YP_006863709.1|	-	2e-06	27.5	0.0	3.9e-06	26.5	0.0	1.4	1	0	0	1	1	1	1	Asparagine	synthase
ATP_bind_3	PF01171.15	gi|408405726|ref|YP_006863709.1|	-	4.9e-06	26.1	0.0	8.6e-06	25.3	0.0	1.4	1	0	0	1	1	1	1	PP-loop	family
QueC	PF06508.8	gi|408405726|ref|YP_006863709.1|	-	9.8e-05	21.7	0.0	0.00098	18.4	0.0	2.1	1	1	1	2	2	2	1	Queuosine	biosynthesis	protein	QueC
tRNA_Me_trans	PF03054.11	gi|408405726|ref|YP_006863709.1|	-	0.0015	17.1	0.0	0.0055	15.3	0.0	1.8	2	0	0	2	2	2	1	tRNA	methyl	transferase
ThiI	PF02568.9	gi|408405726|ref|YP_006863709.1|	-	0.0015	18.0	0.0	0.016	14.6	0.0	2.1	2	0	0	2	2	2	1	Thiamine	biosynthesis	protein	(ThiI)
PAPS_reduct	PF01507.14	gi|408405726|ref|YP_006863709.1|	-	0.081	12.7	0.0	0.13	12.0	0.0	1.3	1	0	0	1	1	1	0	Phosphoadenosine	phosphosulfate	reductase	family
AAA_assoc_C	PF09821.4	gi|408405728|ref|YP_006863711.1|	-	8.8e-05	22.7	0.0	0.013	15.8	0.0	2.4	2	0	0	2	2	2	2	C-terminal	AAA-associated	domain
AAA_assoc_C	PF09821.4	gi|408405730|ref|YP_006863713.1|	-	4.5e-06	26.9	0.0	7.3e-06	26.2	0.0	1.4	1	0	0	1	1	1	1	C-terminal	AAA-associated	domain
HTH_Tnp_ISL3	PF13542.1	gi|408405730|ref|YP_006863713.1|	-	0.0017	17.4	0.0	0.0033	16.5	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_17	PF12728.2	gi|408405730|ref|YP_006863713.1|	-	0.0025	18.0	0.0	0.0053	16.9	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
DUF746	PF05344.6	gi|408405730|ref|YP_006863713.1|	-	0.0032	16.9	0.0	0.036	13.6	0.0	2.3	3	0	0	3	3	3	1	Domain	of	Unknown	Function	(DUF746)
HTH_23	PF13384.1	gi|408405730|ref|YP_006863713.1|	-	0.0086	15.6	0.2	0.33	10.6	0.1	3.0	2	2	0	2	2	2	1	Homeodomain-like	domain
GTP_EFTU_D4	PF14578.1	gi|408405730|ref|YP_006863713.1|	-	0.041	13.5	1.0	1.2	8.8	0.2	2.2	2	0	0	2	2	2	0	Elongation	factor	Tu	domain	4
Sigma70_r4_2	PF08281.7	gi|408405730|ref|YP_006863713.1|	-	0.061	12.7	0.7	0.78	9.2	0.0	2.8	2	1	1	3	3	3	0	Sigma-70,	region	4
Peptidase_M32	PF02074.10	gi|408405732|ref|YP_006863715.1|	-	3.1e-170	567.0	3.1	3.8e-170	566.7	2.1	1.0	1	0	0	1	1	1	1	Carboxypeptidase	Taq	(M32)	metallopeptidase
TrmB	PF01978.14	gi|408405732|ref|YP_006863715.1|	-	0.0024	17.5	0.0	0.0082	15.8	0.0	1.9	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
ThylakoidFormat	PF11264.3	gi|408405732|ref|YP_006863715.1|	-	0.014	15.0	0.1	3.5	7.1	0.1	2.8	3	0	0	3	3	3	0	Thylakoid	formation	protein
AsnC_trans_reg	PF01037.16	gi|408405733|ref|YP_006863716.1|	-	2.6e-12	46.2	0.2	2.9e-12	46.1	0.2	1.0	1	0	0	1	1	1	1	AsnC	family
NapD	PF03927.8	gi|408405733|ref|YP_006863716.1|	-	0.0003	20.5	0.6	0.00036	20.3	0.4	1.1	1	0	0	1	1	1	1	NapD	protein
GYD	PF08734.6	gi|408405733|ref|YP_006863716.1|	-	0.00055	19.6	0.1	0.00061	19.4	0.0	1.1	1	0	0	1	1	1	1	GYD	domain
ACT_4	PF13291.1	gi|408405733|ref|YP_006863716.1|	-	0.001	19.3	0.1	0.11	12.8	0.0	2.1	2	0	0	2	2	2	1	ACT	domain
Flagellin_IN	PF07196.8	gi|408405733|ref|YP_006863716.1|	-	0.008	16.1	1.1	0.011	15.6	0.8	1.3	1	0	0	1	1	1	1	Flagellin	hook	IN	motif
MMR_HSR1_C	PF08438.5	gi|408405733|ref|YP_006863716.1|	-	0.078	13.2	0.2	0.94	9.7	0.0	2.0	1	1	1	2	2	2	0	GTPase	of	unknown	function	C-terminal
Form_Nir_trans	PF01226.12	gi|408405735|ref|YP_006863718.1|	-	7.4e-56	188.8	28.9	7.4e-56	188.8	20.0	1.7	2	0	0	2	2	2	1	Formate/nitrite	transporter
LTD	PF00932.14	gi|408405737|ref|YP_006863720.1|	-	0.0033	17.4	0.2	0.0088	16.1	0.1	1.7	1	0	0	1	1	1	1	Lamin	Tail	Domain
Cyanate_lyase	PF02560.9	gi|408405738|ref|YP_006863721.1|	-	1.4e-21	75.7	0.2	3.3e-21	74.5	0.2	1.6	1	1	0	1	1	1	1	Cyanate	lyase	C-terminal	domain
SHOCT	PF09851.4	gi|408405739|ref|YP_006863722.1|	-	1.9e-08	33.4	0.2	4.1e-08	32.4	0.2	1.6	1	0	0	1	1	1	1	Short	C-terminal	domain
AGT	PF11440.3	gi|408405739|ref|YP_006863722.1|	-	0.038	12.8	0.1	0.065	12.0	0.0	1.3	1	0	0	1	1	1	0	DNA	alpha-glucosyltransferase
DUF288	PF03385.12	gi|408405739|ref|YP_006863722.1|	-	0.069	11.6	0.1	0.12	10.8	0.1	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF288
GvpG	PF05120.7	gi|408405739|ref|YP_006863722.1|	-	0.12	12.2	0.2	0.23	11.3	0.1	1.4	1	0	0	1	1	1	0	Gas	vesicle	protein	G
DUF3099	PF11298.3	gi|408405740|ref|YP_006863723.1|	-	0.095	12.4	0.0	0.096	12.4	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3099)
ParBc	PF02195.13	gi|408405741|ref|YP_006863724.1|	-	1.4e-21	76.4	0.1	3.2e-21	75.2	0.1	1.7	1	0	0	1	1	1	1	ParB-like	nuclease	domain
KorB	PF08535.5	gi|408405741|ref|YP_006863724.1|	-	0.00014	21.9	0.8	0.0006	19.9	0.1	2.3	3	0	0	3	3	3	1	KorB	domain
DUF1861	PF08950.5	gi|408405741|ref|YP_006863724.1|	-	0.048	12.4	0.0	0.076	11.8	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1861)
Peptidase_C36	PF05415.6	gi|408405742|ref|YP_006863725.1|	-	0.05	13.4	0.0	0.066	13.1	0.0	1.1	1	0	0	1	1	1	0	Beet	necrotic	yellow	vein	furovirus-type	papain-like	endopeptidase
Gly_reductase	PF09338.6	gi|408405742|ref|YP_006863725.1|	-	0.12	10.5	0.0	0.16	10.1	0.0	1.1	1	0	0	1	1	1	0	Glycine/sarcosine/betaine	reductase	component	B	subunits
HTH_24	PF13412.1	gi|408405743|ref|YP_006863726.1|	-	1e-05	24.8	0.8	3.3e-05	23.1	0.6	1.8	1	1	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_12	PF08461.5	gi|408405743|ref|YP_006863726.1|	-	0.00089	18.9	0.6	0.0014	18.3	0.4	1.3	1	0	0	1	1	1	1	Ribonuclease	R	winged-helix	domain
HTH_AsnC-type	PF13404.1	gi|408405743|ref|YP_006863726.1|	-	0.0025	17.2	0.4	0.014	14.8	0.3	2.0	1	1	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
NTP_transf_2	PF01909.18	gi|408405744|ref|YP_006863727.1|	-	8.8e-08	32.3	0.2	1.5e-07	31.6	0.1	1.5	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
HTH_20	PF12840.2	gi|408405744|ref|YP_006863727.1|	-	0.003	17.3	0.0	0.0046	16.7	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
DUF4269	PF14091.1	gi|408405744|ref|YP_006863727.1|	-	0.0042	17.0	0.0	0.0068	16.3	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4269)
HTH_24	PF13412.1	gi|408405744|ref|YP_006863727.1|	-	0.0044	16.3	0.0	0.0088	15.4	0.0	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.2	gi|408405744|ref|YP_006863727.1|	-	0.038	13.6	0.0	0.079	12.6	0.0	1.5	1	0	0	1	1	1	0	MarR	family
HTH_Crp_2	PF13545.1	gi|408405744|ref|YP_006863727.1|	-	0.054	13.2	0.0	0.096	12.4	0.0	1.4	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
GntR	PF00392.16	gi|408405744|ref|YP_006863727.1|	-	0.069	12.5	0.0	0.17	11.3	0.0	1.7	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
TrmB	PF01978.14	gi|408405744|ref|YP_006863727.1|	-	0.12	12.1	0.0	0.22	11.2	0.0	1.4	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HEPN	PF05168.9	gi|408405745|ref|YP_006863728.1|	-	6.7e-05	22.7	0.0	7.4e-05	22.6	0.0	1.1	1	0	0	1	1	1	1	HEPN	domain
ThiC	PF01964.13	gi|408405747|ref|YP_006863730.1|	-	3.4e-176	585.9	0.6	4.2e-176	585.6	0.4	1.0	1	0	0	1	1	1	1	ThiC	family
ATG11	PF10377.4	gi|408405748|ref|YP_006863731.1|	-	0.13	12.1	0.0	0.13	12.1	0.0	1.2	1	0	0	1	1	1	0	Autophagy-related	protein	11
Dict-STAT-coil	PF09267.5	gi|408405750|ref|YP_006863733.1|	-	0.078	13.1	0.2	0.091	12.9	0.1	1.1	1	0	0	1	1	1	0	Dictyostelium	STAT,	coiled	coil
DUF4290	PF14123.1	gi|408405752|ref|YP_006863735.1|	-	0.078	12.1	0.0	0.11	11.6	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4290)
YlbE	PF14003.1	gi|408405752|ref|YP_006863735.1|	-	0.094	12.8	0.3	4.4	7.4	0.0	2.6	2	0	0	2	2	2	0	YlbE-like	protein
DUF4149	PF13664.1	gi|408405754|ref|YP_006863737.1|	-	0.012	15.5	2.1	0.012	15.5	1.5	2.5	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF4149)
DUF2269	PF10027.4	gi|408405754|ref|YP_006863737.1|	-	0.097	12.4	6.2	0.068	12.9	3.2	1.6	1	1	0	1	1	1	0	Predicted	integral	membrane	protein	(DUF2269)
Tetraspannin	PF00335.15	gi|408405754|ref|YP_006863737.1|	-	0.51	9.5	2.7	0.64	9.2	1.2	1.7	1	1	1	2	2	2	0	Tetraspanin	family
DUF4293	PF14126.1	gi|408405754|ref|YP_006863737.1|	-	0.54	10.1	6.1	0.07	13.0	1.1	1.8	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4293)
DUF412	PF04217.8	gi|408405754|ref|YP_006863737.1|	-	2.2	8.0	6.4	2.3	8.0	2.4	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function,	DUF412
NapE	PF06796.6	gi|408405754|ref|YP_006863737.1|	-	6.5	6.1	10.4	4.4	6.6	0.2	3.1	3	0	0	3	3	3	0	Periplasmic	nitrate	reductase	protein	NapE
AP_endonuc_2	PF01261.19	gi|408405755|ref|YP_006863738.1|	-	3.3e-11	42.8	0.0	5.9e-10	38.7	0.0	2.1	1	1	0	1	1	1	1	Xylose	isomerase-like	TIM	barrel
DnaJ_CXXCXGXG	PF00684.14	gi|408405756|ref|YP_006863739.1|	-	0.098	12.7	18.9	0.37	10.8	6.9	2.8	1	1	0	1	1	1	0	DnaJ	central	domain
zf-CCHC	PF00098.18	gi|408405756|ref|YP_006863739.1|	-	0.17	11.8	2.0	0.17	11.8	1.4	3.8	4	0	0	4	4	4	0	Zinc	knuckle
Opy2	PF09463.5	gi|408405756|ref|YP_006863739.1|	-	1.1	9.4	4.7	0.73	9.9	1.6	1.9	1	1	0	1	1	1	0	Opy2	protein
TNFR_c6	PF00020.13	gi|408405756|ref|YP_006863739.1|	-	1.9	8.6	9.4	4.3	7.4	0.6	2.2	2	0	0	2	2	2	0	TNFR/NGFR	cysteine-rich	region
FYVE_2	PF02318.11	gi|408405756|ref|YP_006863739.1|	-	3.9	7.3	5.6	15	5.4	3.9	1.8	1	1	0	1	1	1	0	FYVE-type	zinc	finger
DZR	PF12773.2	gi|408405756|ref|YP_006863739.1|	-	4.2	7.2	14.2	2.8e+02	1.4	10.0	2.5	1	1	0	1	1	1	0	Double	zinc	ribbon
AAA	PF00004.24	gi|408405758|ref|YP_006863741.1|	-	8.5e-98	323.6	0.0	1.8e-47	160.8	0.0	2.3	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_2	PF07724.9	gi|408405758|ref|YP_006863741.1|	-	3.1e-15	56.4	0.0	2.4e-06	27.5	0.0	2.5	2	0	0	2	2	2	2	AAA	domain	(Cdc48	subfamily)
RuvB_N	PF05496.7	gi|408405758|ref|YP_006863741.1|	-	8.5e-15	54.4	0.0	1e-07	31.2	0.0	2.7	2	0	0	2	2	2	2	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_22	PF13401.1	gi|408405758|ref|YP_006863741.1|	-	1.7e-14	54.0	0.1	0.00064	19.8	0.0	4.2	2	2	1	3	3	3	3	AAA	domain
AAA_16	PF13191.1	gi|408405758|ref|YP_006863741.1|	-	2.6e-13	50.3	0.0	3.6e-06	27.0	0.0	3.4	2	1	1	3	3	3	2	AAA	ATPase	domain
CDC48_2	PF02933.12	gi|408405758|ref|YP_006863741.1|	-	3.2e-12	45.9	0.0	7.6e-12	44.6	0.0	1.6	1	0	0	1	1	1	1	Cell	division	protein	48	(CDC48),	domain	2
AAA_17	PF13207.1	gi|408405758|ref|YP_006863741.1|	-	7.9e-12	46.0	0.0	1.4e-05	25.9	0.0	2.7	2	0	0	2	2	2	2	AAA	domain
AAA_5	PF07728.9	gi|408405758|ref|YP_006863741.1|	-	1.2e-11	44.4	1.1	6.3e-05	22.7	0.1	4.4	2	2	0	2	2	2	2	AAA	domain	(dynein-related	subfamily)
AAA_33	PF13671.1	gi|408405758|ref|YP_006863741.1|	-	6.1e-11	42.3	0.0	3e-06	27.1	0.0	2.6	2	0	0	2	2	2	2	AAA	domain
Zeta_toxin	PF06414.7	gi|408405758|ref|YP_006863741.1|	-	1.9e-10	40.2	0.0	0.00038	19.5	0.0	2.3	2	0	0	2	2	2	2	Zeta	toxin
AAA_14	PF13173.1	gi|408405758|ref|YP_006863741.1|	-	2.3e-10	40.4	0.0	0.00024	20.9	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
AAA_19	PF13245.1	gi|408405758|ref|YP_006863741.1|	-	2.8e-09	36.6	0.7	0.00074	19.2	0.1	3.0	2	0	0	2	2	2	2	Part	of	AAA	domain
TIP49	PF06068.8	gi|408405758|ref|YP_006863741.1|	-	3.4e-09	35.9	0.0	0.002	16.9	0.0	2.4	2	0	0	2	2	2	2	TIP49	C-terminus
IstB_IS21	PF01695.12	gi|408405758|ref|YP_006863741.1|	-	2.9e-08	33.3	0.2	0.002	17.5	0.0	2.4	2	0	0	2	2	2	2	IstB-like	ATP	binding	protein
AAA_18	PF13238.1	gi|408405758|ref|YP_006863741.1|	-	1.1e-07	32.1	0.3	0.0064	16.7	0.0	3.0	3	0	0	3	3	3	2	AAA	domain
RNA_helicase	PF00910.17	gi|408405758|ref|YP_006863741.1|	-	7.6e-07	29.2	0.0	0.039	14.1	0.0	2.8	2	0	0	2	2	2	2	RNA	helicase
Mg_chelatase	PF01078.16	gi|408405758|ref|YP_006863741.1|	-	1.2e-06	27.8	0.6	0.049	12.7	0.0	2.6	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
AAA_28	PF13521.1	gi|408405758|ref|YP_006863741.1|	-	1.9e-06	27.9	0.0	0.0023	17.9	0.0	2.6	2	0	0	2	2	2	1	AAA	domain
Arch_ATPase	PF01637.13	gi|408405758|ref|YP_006863741.1|	-	1.9e-06	27.7	0.0	0.04	13.6	0.0	3.5	2	1	1	3	3	3	2	Archaeal	ATPase
Sigma54_activat	PF00158.21	gi|408405758|ref|YP_006863741.1|	-	2.8e-06	26.9	0.5	0.21	11.0	0.0	4.3	4	1	0	4	4	4	2	Sigma-54	interaction	domain
PhoH	PF02562.11	gi|408405758|ref|YP_006863741.1|	-	3.4e-06	26.4	0.3	0.014	14.6	0.0	2.5	2	0	0	2	2	2	2	PhoH-like	protein
AAA_25	PF13481.1	gi|408405758|ref|YP_006863741.1|	-	4.5e-06	26.2	3.0	0.56	9.5	0.0	4.0	3	1	0	4	4	4	2	AAA	domain
NACHT	PF05729.7	gi|408405758|ref|YP_006863741.1|	-	1.1e-05	25.2	0.0	0.11	12.1	0.0	3.6	4	0	0	4	4	4	1	NACHT	domain
AAA_3	PF07726.6	gi|408405758|ref|YP_006863741.1|	-	1.1e-05	25.0	0.0	0.12	11.9	0.0	3.0	3	0	0	3	3	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF815	PF05673.8	gi|408405758|ref|YP_006863741.1|	-	3.2e-05	23.0	0.0	0.05	12.5	0.0	2.6	2	1	0	2	2	2	2	Protein	of	unknown	function	(DUF815)
AAA_24	PF13479.1	gi|408405758|ref|YP_006863741.1|	-	3.5e-05	23.4	0.5	0.065	12.8	0.1	2.7	2	0	0	2	2	2	2	AAA	domain
AAA_30	PF13604.1	gi|408405758|ref|YP_006863741.1|	-	3.8e-05	23.3	0.2	0.31	10.6	0.0	3.1	3	0	0	3	3	3	2	AAA	domain
ATP-synt_ab	PF00006.20	gi|408405758|ref|YP_006863741.1|	-	5.9e-05	22.6	0.0	0.13	11.7	0.0	2.6	2	1	0	2	2	2	2	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
DUF2075	PF09848.4	gi|408405758|ref|YP_006863741.1|	-	7.1e-05	21.9	0.0	0.041	12.8	0.0	2.2	2	0	0	2	2	2	2	Uncharacterized	conserved	protein	(DUF2075)
ABC_tran	PF00005.22	gi|408405758|ref|YP_006863741.1|	-	7.6e-05	23.0	0.0	0.094	13.0	0.0	2.4	2	0	0	2	2	2	1	ABC	transporter
NB-ARC	PF00931.17	gi|408405758|ref|YP_006863741.1|	-	0.0001	21.3	0.0	0.051	12.4	0.0	2.4	2	0	0	2	2	2	1	NB-ARC	domain
KaiC	PF06745.8	gi|408405758|ref|YP_006863741.1|	-	0.00018	20.6	0.7	0.54	9.3	0.0	3.2	2	1	1	3	3	3	2	KaiC
Sigma54_activ_2	PF14532.1	gi|408405758|ref|YP_006863741.1|	-	0.00024	21.1	0.0	1	9.4	0.0	2.6	2	0	0	2	2	2	2	Sigma-54	interaction	domain
NTPase_1	PF03266.10	gi|408405758|ref|YP_006863741.1|	-	0.00026	20.7	1.9	0.4	10.3	0.0	3.9	3	1	1	4	4	4	1	NTPase
AAA_11	PF13086.1	gi|408405758|ref|YP_006863741.1|	-	0.00028	20.5	0.0	0.3	10.6	0.0	2.3	2	0	0	2	2	2	2	AAA	domain
Parvo_NS1	PF01057.12	gi|408405758|ref|YP_006863741.1|	-	0.00093	18.1	0.3	0.82	8.4	0.0	2.2	2	0	0	2	2	2	2	Parvovirus	non-structural	protein	NS1
T2SE	PF00437.15	gi|408405758|ref|YP_006863741.1|	-	0.0012	17.8	0.0	0.71	8.7	0.0	2.6	2	1	0	2	2	2	1	Type	II/IV	secretion	system	protein
SurE	PF01975.12	gi|408405758|ref|YP_006863741.1|	-	0.0012	18.1	0.5	0.073	12.3	0.1	2.2	2	0	0	2	2	2	1	Survival	protein	SurE
ResIII	PF04851.10	gi|408405758|ref|YP_006863741.1|	-	0.0014	18.4	0.0	2	8.2	0.0	2.5	2	1	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
AFG1_ATPase	PF03969.11	gi|408405758|ref|YP_006863741.1|	-	0.002	17.0	0.0	1.7	7.3	0.0	2.4	2	0	0	2	2	2	2	AFG1-like	ATPase
KTI12	PF08433.5	gi|408405758|ref|YP_006863741.1|	-	0.0025	17.0	0.0	0.23	10.6	0.0	2.5	2	1	0	2	2	2	1	Chromatin	associated	protein	KTI12
Bac_DnaA	PF00308.13	gi|408405758|ref|YP_006863741.1|	-	0.0042	16.7	0.0	1.5	8.4	0.0	2.7	2	1	0	2	2	2	1	Bacterial	dnaA	protein
Viral_helicase1	PF01443.13	gi|408405758|ref|YP_006863741.1|	-	0.0043	16.6	0.0	1.4	8.3	0.0	2.3	2	0	0	2	2	2	1	Viral	(Superfamily	1)	RNA	helicase
UPF0079	PF02367.12	gi|408405758|ref|YP_006863741.1|	-	0.0052	16.3	0.0	1.6	8.3	0.0	2.4	2	0	0	2	2	2	1	Uncharacterised	P-loop	hydrolase	UPF0079
KAP_NTPase	PF07693.9	gi|408405758|ref|YP_006863741.1|	-	0.0053	15.7	0.0	0.82	8.5	0.0	2.9	2	1	0	3	3	3	1	KAP	family	P-loop	domain
SKI	PF01202.17	gi|408405758|ref|YP_006863741.1|	-	0.011	15.6	0.0	2.7	7.8	0.0	2.4	2	0	0	2	2	2	0	Shikimate	kinase
Cytidylate_kin2	PF13189.1	gi|408405758|ref|YP_006863741.1|	-	0.017	15.0	0.0	0.071	13.0	0.0	1.9	2	0	0	2	2	2	0	Cytidylate	kinase-like	family
CPT	PF07931.7	gi|408405758|ref|YP_006863741.1|	-	0.026	14.1	0.0	2.4	7.7	0.0	2.5	2	0	0	2	2	2	0	Chloramphenicol	phosphotransferase-like	protein
Guanylate_kin	PF00625.16	gi|408405758|ref|YP_006863741.1|	-	0.029	13.8	0.2	6.5	6.1	0.0	3.4	3	1	1	4	4	3	0	Guanylate	kinase
Torsin	PF06309.6	gi|408405758|ref|YP_006863741.1|	-	0.045	13.6	0.0	1.6	8.5	0.0	2.5	2	0	0	2	2	2	0	Torsin
cobW	PF02492.14	gi|408405758|ref|YP_006863741.1|	-	0.061	12.7	0.3	7.4	5.9	0.0	2.6	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
DAP3	PF10236.4	gi|408405758|ref|YP_006863741.1|	-	0.068	12.1	0.0	6.4	5.6	0.0	2.2	2	0	0	2	2	2	0	Mitochondrial	ribosomal	death-associated	protein	3
SRPRB	PF09439.5	gi|408405758|ref|YP_006863741.1|	-	0.14	11.3	0.0	7.6	5.7	0.0	2.6	2	1	0	2	2	2	0	Signal	recognition	particle	receptor	beta	subunit
Zot	PF05707.7	gi|408405758|ref|YP_006863741.1|	-	0.31	10.4	0.7	69	2.8	0.0	3.5	3	1	1	4	4	4	0	Zonular	occludens	toxin	(Zot)
Virulence_RhuM	PF13310.1	gi|408405759|ref|YP_006863742.1|	-	0.031	13.2	0.0	0.037	13.0	0.0	1.1	1	0	0	1	1	1	0	Virulence	protein	RhuM	family
Aldo_ket_red	PF00248.16	gi|408405761|ref|YP_006863744.1|	-	3.1e-57	193.5	0.0	4.1e-57	193.1	0.0	1.2	1	0	0	1	1	1	1	Aldo/keto	reductase	family
Endonuc-BsobI	PF09194.5	gi|408405761|ref|YP_006863744.1|	-	0.08	11.8	0.0	0.12	11.2	0.0	1.2	1	0	0	1	1	1	0	Restriction	endonuclease	BsobI
SpoU_methylase	PF00588.14	gi|408405762|ref|YP_006863745.1|	-	1.5e-26	92.9	0.1	2.2e-26	92.4	0.1	1.2	1	0	0	1	1	1	1	SpoU	rRNA	Methylase	family
Methyltrn_RNA_4	PF09936.4	gi|408405762|ref|YP_006863745.1|	-	0.00036	20.0	0.2	0.0035	16.8	0.1	2.1	1	1	0	1	1	1	1	SAM-dependent	RNA	methyltransferase
DUF1326	PF07040.6	gi|408405764|ref|YP_006863747.1|	-	5.5e-40	137.0	0.0	6.1e-40	136.9	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1326)
HYR	PF02494.11	gi|408405766|ref|YP_006863749.1|	-	0.0036	17.2	0.3	0.076	13.0	0.0	2.5	2	1	0	2	2	2	1	HYR	domain
EF1G	PF00647.14	gi|408405766|ref|YP_006863749.1|	-	0.014	15.0	0.0	0.027	14.1	0.0	1.4	1	0	0	1	1	1	0	Elongation	factor	1	gamma,	conserved	domain
Lar_restr_allev	PF14354.1	gi|408405770|ref|YP_006863753.1|	-	0.032	14.5	0.1	0.041	14.1	0.1	1.3	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
DUF2719	PF10891.3	gi|408405770|ref|YP_006863753.1|	-	0.11	12.2	0.1	0.19	11.4	0.1	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2719)
Cys_rich_CPCC	PF14206.1	gi|408405770|ref|YP_006863753.1|	-	0.11	12.0	2.0	0.37	10.3	1.4	1.8	1	1	1	2	2	2	0	Cysteine-rich	CPCC
Prok-RING_1	PF14446.1	gi|408405770|ref|YP_006863753.1|	-	0.19	11.4	2.5	0.38	10.5	1.7	1.5	1	1	0	1	1	1	0	Prokaryotic	RING	finger	family	1
N6_N4_Mtase	PF01555.13	gi|408405771|ref|YP_006863754.1|	-	2.8e-39	134.9	0.0	3.8e-39	134.5	0.0	1.1	1	0	0	1	1	1	1	DNA	methylase
Methyltransf_26	PF13659.1	gi|408405771|ref|YP_006863754.1|	-	4.1e-08	33.2	0.0	0.0048	16.9	0.0	2.3	2	0	0	2	2	2	2	Methyltransferase	domain
UPF0020	PF01170.13	gi|408405771|ref|YP_006863754.1|	-	0.0043	16.6	0.0	0.49	9.9	0.0	2.3	2	0	0	2	2	2	2	Putative	RNA	methylase	family	UPF0020
Methyltransf_18	PF12847.2	gi|408405772|ref|YP_006863755.1|	-	3.3e-18	66.3	0.1	5.8e-18	65.5	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|408405772|ref|YP_006863755.1|	-	1.9e-16	60.0	0.1	3.1e-16	59.3	0.1	1.4	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|408405772|ref|YP_006863755.1|	-	6.5e-11	42.4	0.1	1.5e-10	41.3	0.0	1.6	2	0	0	2	2	1	1	Methyltransferase	domain
MTS	PF05175.9	gi|408405772|ref|YP_006863755.1|	-	7.2e-11	41.7	0.3	4.2e-10	39.2	0.2	2.2	1	1	0	1	1	1	1	Methyltransferase	small	domain
PrmA	PF06325.8	gi|408405772|ref|YP_006863755.1|	-	2.7e-09	36.5	0.9	3.5e-09	36.2	0.7	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_11	PF08241.7	gi|408405772|ref|YP_006863755.1|	-	7.7e-09	35.9	0.2	2.8e-08	34.1	0.0	1.8	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|408405772|ref|YP_006863755.1|	-	9.9e-09	35.2	0.0	3.2e-08	33.5	0.0	1.9	2	1	0	2	2	1	1	Methyltransferase	domain
PCMT	PF01135.14	gi|408405772|ref|YP_006863755.1|	-	1.9e-08	34.0	0.1	2.4e-08	33.7	0.1	1.1	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_24	PF13578.1	gi|408405772|ref|YP_006863755.1|	-	1.4e-07	32.3	0.0	2.1e-07	31.7	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_4	PF02390.12	gi|408405772|ref|YP_006863755.1|	-	2.3e-07	30.0	0.1	2.5e-05	23.3	0.0	2.1	2	0	0	2	2	2	1	Putative	methyltransferase
Methyltransf_12	PF08242.7	gi|408405772|ref|YP_006863755.1|	-	2.6e-07	31.0	0.0	5.6e-07	29.9	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
UPF0020	PF01170.13	gi|408405772|ref|YP_006863755.1|	-	3.9e-07	29.8	0.1	1e-06	28.4	0.0	1.6	1	1	0	2	2	2	1	Putative	RNA	methylase	family	UPF0020
Methyltransf_23	PF13489.1	gi|408405772|ref|YP_006863755.1|	-	8.3e-07	28.8	0.0	1.2e-06	28.3	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
GCD14	PF08704.5	gi|408405772|ref|YP_006863755.1|	-	1.3e-06	28.1	0.0	1.7e-06	27.6	0.0	1.2	1	0	0	1	1	1	1	tRNA	methyltransferase	complex	GCD14	subunit
CMAS	PF02353.15	gi|408405772|ref|YP_006863755.1|	-	1.5e-06	27.5	0.1	2e-06	27.1	0.0	1.2	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
Cons_hypoth95	PF03602.10	gi|408405772|ref|YP_006863755.1|	-	1.2e-05	24.7	0.0	1.6e-05	24.3	0.0	1.2	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
Ubie_methyltran	PF01209.13	gi|408405772|ref|YP_006863755.1|	-	2.1e-05	23.7	0.1	2.7e-05	23.3	0.1	1.2	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
RrnaAD	PF00398.15	gi|408405772|ref|YP_006863755.1|	-	2.9e-05	23.2	0.0	4.3e-05	22.6	0.0	1.3	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
Spermine_synth	PF01564.12	gi|408405772|ref|YP_006863755.1|	-	0.00011	21.2	0.1	0.00016	20.7	0.1	1.3	1	1	0	1	1	1	1	Spermine/spermidine	synthase
Methyltransf_15	PF09445.5	gi|408405772|ref|YP_006863755.1|	-	0.00037	20.0	0.0	0.00072	19.1	0.0	1.3	1	1	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
Methyltransf_3	PF01596.12	gi|408405772|ref|YP_006863755.1|	-	0.00044	19.3	0.2	0.00072	18.6	0.1	1.4	1	1	0	1	1	1	1	O-methyltransferase
Met_10	PF02475.11	gi|408405772|ref|YP_006863755.1|	-	0.00069	19.2	0.0	0.00093	18.8	0.0	1.2	1	0	0	1	1	1	1	Met-10+	like-protein
FmrO	PF07091.6	gi|408405772|ref|YP_006863755.1|	-	0.0012	17.9	0.0	0.0018	17.3	0.0	1.3	1	0	0	1	1	1	1	Ribosomal	RNA	methyltransferase	(FmrO)
Methyltransf_5	PF01795.14	gi|408405772|ref|YP_006863755.1|	-	0.0012	18.1	0.0	0.0039	16.5	0.0	1.7	1	1	1	2	2	2	1	MraW	methylase	family
GidB	PF02527.10	gi|408405772|ref|YP_006863755.1|	-	0.0013	17.9	0.1	0.0017	17.5	0.1	1.3	1	1	0	1	1	1	1	rRNA	small	subunit	methyltransferase	G
Methyltransf_32	PF13679.1	gi|408405772|ref|YP_006863755.1|	-	0.0015	18.2	0.1	0.0025	17.5	0.0	1.4	2	0	0	2	2	1	1	Methyltransferase	domain
POR	PF01558.13	gi|408405772|ref|YP_006863755.1|	-	0.0018	18.2	0.1	0.0065	16.3	0.1	1.7	1	1	1	2	2	2	1	Pyruvate	ferredoxin/flavodoxin	oxidoreductase
DOT1	PF08123.8	gi|408405772|ref|YP_006863755.1|	-	0.0019	17.5	0.3	0.016	14.5	0.0	1.9	2	0	0	2	2	2	1	Histone	methylation	protein	DOT1
DUF633	PF04816.7	gi|408405772|ref|YP_006863755.1|	-	0.0026	17.1	0.1	0.0041	16.5	0.1	1.3	1	1	0	1	1	1	1	Family	of	unknown	function	(DUF633)
NNMT_PNMT_TEMT	PF01234.12	gi|408405772|ref|YP_006863755.1|	-	0.0051	15.8	0.1	0.39	9.6	0.1	2.1	2	0	0	2	2	2	1	NNMT/PNMT/TEMT	family
NodS	PF05401.6	gi|408405772|ref|YP_006863755.1|	-	0.016	14.5	0.2	0.038	13.3	0.0	1.7	2	0	0	2	2	2	0	Nodulation	protein	S	(NodS)
FtsJ	PF01728.14	gi|408405772|ref|YP_006863755.1|	-	0.019	14.9	0.1	0.14	12.0	0.1	1.9	1	1	0	1	1	1	0	FtsJ-like	methyltransferase
TylF	PF05711.6	gi|408405772|ref|YP_006863755.1|	-	0.089	11.8	0.0	0.11	11.5	0.0	1.1	1	0	0	1	1	1	0	Macrocin-O-methyltransferase	(TylF)
MetW	PF07021.7	gi|408405772|ref|YP_006863755.1|	-	0.12	11.7	0.1	0.15	11.4	0.1	1.2	1	0	0	1	1	1	0	Methionine	biosynthesis	protein	MetW
NfeD	PF01957.13	gi|408405773|ref|YP_006863756.1|	-	0.011	15.9	0.5	0.011	15.9	0.3	1.7	1	1	1	2	2	2	0	NfeD-like	C-terminal,	partner-binding
OppC_N	PF12911.2	gi|408405773|ref|YP_006863756.1|	-	0.57	9.5	2.6	2	7.8	0.1	2.6	2	1	0	2	2	2	0	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
Rab5ip	PF07019.7	gi|408405773|ref|YP_006863756.1|	-	0.95	9.6	0.0	0.95	9.6	0.0	3.1	2	1	1	3	3	3	0	Rab5-interacting	protein	(Rab5ip)
FbpA	PF05833.6	gi|408405775|ref|YP_006863758.1|	-	8.4e-37	126.7	4.1	1.1e-36	126.3	2.8	1.1	1	0	0	1	1	1	1	Fibronectin-binding	protein	A	N-terminus	(FbpA)
DUF814	PF05670.8	gi|408405775|ref|YP_006863758.1|	-	8.4e-20	70.4	0.0	3.8e-18	65.1	0.0	2.5	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF814)
KLRAQ	PF10205.4	gi|408405775|ref|YP_006863758.1|	-	0.13	12.3	4.9	1.4	9.0	0.2	2.7	2	0	0	2	2	2	0	Predicted	coiled-coil	domain-containing	protein
Ribosomal_S13	PF00416.17	gi|408405775|ref|YP_006863758.1|	-	0.16	12.4	1.2	0.92	9.9	0.8	2.3	1	1	0	1	1	1	0	Ribosomal	protein	S13/S18
Spore_YabQ	PF09578.5	gi|408405776|ref|YP_006863759.1|	-	0.6	10.1	4.5	0.54	10.2	0.8	1.9	1	1	1	2	2	2	0	Spore	cortex	protein	YabQ	(Spore_YabQ)
DUF2975	PF11188.3	gi|408405776|ref|YP_006863759.1|	-	2.3	7.9	6.4	2.5	7.8	4.4	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2975)
DUF202	PF02656.10	gi|408405776|ref|YP_006863759.1|	-	5.5	7.2	5.6	18	5.6	3.9	1.8	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF202)
CBS	PF00571.23	gi|408405777|ref|YP_006863760.1|	-	2.8e-30	103.8	1.2	3.6e-16	58.6	0.1	2.4	2	0	0	2	2	2	2	CBS	domain
TF_Zn_Ribbon	PF08271.7	gi|408405777|ref|YP_006863760.1|	-	0.027	13.7	2.3	0.058	12.7	1.6	1.5	1	0	0	1	1	1	0	TFIIB	zinc-binding
ABC2_membrane_3	PF12698.2	gi|408405777|ref|YP_006863760.1|	-	0.076	12.0	0.1	0.33	9.9	0.0	1.8	1	1	0	1	1	1	0	ABC-2	family	transporter	protein
Mut7-C	PF01927.11	gi|408405778|ref|YP_006863761.1|	-	2.5e-38	131.3	0.0	2.9e-38	131.1	0.0	1.0	1	0	0	1	1	1	1	Mut7-C	RNAse	domain
zf-TFIIIC	PF12660.2	gi|408405778|ref|YP_006863761.1|	-	0.11	12.4	0.1	0.15	11.9	0.0	1.2	1	0	0	1	1	1	0	Putative	zinc-finger	of	transcription	factor	IIIC	complex
Rubredoxin	PF00301.15	gi|408405778|ref|YP_006863761.1|	-	0.16	11.8	1.9	9.3	6.2	0.4	2.2	2	0	0	2	2	2	0	Rubredoxin
vATP-synt_E	PF01991.13	gi|408405779|ref|YP_006863762.1|	-	2.6e-27	95.4	9.9	4.3e-27	94.6	6.5	1.5	1	1	1	2	2	2	1	ATP	synthase	(E/31	kDa)	subunit
UPF0254	PF06787.6	gi|408405779|ref|YP_006863762.1|	-	0.026	14.0	0.3	0.051	13.0	0.2	1.5	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0254)
Apolipoprotein	PF01442.13	gi|408405779|ref|YP_006863762.1|	-	0.033	13.7	3.2	0.093	12.2	2.2	1.7	1	1	0	1	1	1	0	Apolipoprotein	A1/A4/E	domain
DUF371	PF04027.8	gi|408405779|ref|YP_006863762.1|	-	0.039	13.6	1.7	1.5	8.4	0.1	2.6	1	1	0	2	2	2	0	Domain	of	unknown	function	(DUF371)
FliH	PF02108.11	gi|408405779|ref|YP_006863762.1|	-	0.066	13.1	0.2	0.066	13.1	0.2	2.3	1	1	1	2	2	2	0	Flagellar	assembly	protein	FliH
UN_NPL4	PF11543.3	gi|408405779|ref|YP_006863762.1|	-	0.12	12.6	0.7	0.93	9.8	0.0	2.6	3	0	0	3	3	3	0	Nuclear	pore	localisation	protein	NPL4
Prominin	PF05478.6	gi|408405779|ref|YP_006863762.1|	-	0.13	9.7	2.1	0.13	9.7	0.4	1.6	1	1	1	2	2	2	0	Prominin
Herpes_UL14	PF03580.9	gi|408405779|ref|YP_006863762.1|	-	0.16	11.7	5.7	1	9.1	1.2	2.4	2	1	0	2	2	2	0	Herpesvirus	UL14-like	protein
Filament	PF00038.16	gi|408405779|ref|YP_006863762.1|	-	1.7	8.0	9.5	5.1	6.4	6.6	1.9	1	1	0	1	1	1	0	Intermediate	filament	protein
ATP-synt_ab	PF00006.20	gi|408405780|ref|YP_006863763.1|	-	8.7e-95	316.2	0.0	1.2e-94	315.8	0.0	1.2	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
ATP-synt_ab_C	PF00306.22	gi|408405780|ref|YP_006863763.1|	-	1.6e-16	60.7	0.8	2.8e-16	60.0	0.6	1.4	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	chain,	C	terminal	domain
ATP-synt_ab_N	PF02874.18	gi|408405780|ref|YP_006863763.1|	-	2.4e-13	50.0	3.1	4.7e-13	49.1	0.2	2.7	3	0	0	3	3	3	1	ATP	synthase	alpha/beta	family,	beta-barrel	domain
AAA_19	PF13245.1	gi|408405780|ref|YP_006863763.1|	-	0.0025	17.5	0.1	0.028	14.1	0.1	2.7	1	1	0	1	1	1	1	Part	of	AAA	domain
AAA_22	PF13401.1	gi|408405780|ref|YP_006863763.1|	-	0.059	13.5	0.0	0.13	12.4	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
ATP-synt_ab	PF00006.20	gi|408405781|ref|YP_006863764.1|	-	9.2e-63	211.6	0.0	1.4e-62	211.0	0.0	1.3	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
ATP-synt_ab_C	PF00306.22	gi|408405781|ref|YP_006863764.1|	-	7.1e-11	42.5	0.0	1.3e-10	41.6	0.0	1.5	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	chain,	C	terminal	domain
ATP-synt_ab_N	PF02874.18	gi|408405781|ref|YP_006863764.1|	-	2.7e-08	33.9	0.7	6.5e-08	32.6	0.5	1.7	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	family,	beta-barrel	domain
HAS-barrel	PF09378.5	gi|408405781|ref|YP_006863764.1|	-	7.6e-05	22.5	0.5	0.00052	19.8	0.3	2.3	2	0	0	2	2	2	1	HAS	barrel	domain
ATP-synt_D	PF01813.12	gi|408405782|ref|YP_006863765.1|	-	6.9e-53	179.1	5.5	8e-53	178.9	3.8	1.0	1	0	0	1	1	1	1	ATP	synthase	subunit	D
DUF4356	PF14266.1	gi|408405782|ref|YP_006863765.1|	-	0.035	12.5	0.9	0.043	12.2	0.2	1.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4356)
ATP-synt_C	PF00137.16	gi|408405783|ref|YP_006863766.1|	-	2.1e-18	65.9	18.5	2.7e-18	65.6	12.8	1.1	1	0	0	1	1	1	1	ATP	synthase	subunit	C
DUF1469	PF07332.6	gi|408405783|ref|YP_006863766.1|	-	0.72	9.6	8.8	0.92	9.2	6.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1469)
V_ATPase_I	PF01496.14	gi|408405784|ref|YP_006863767.1|	-	1.4e-51	175.2	8.1	5.5e-51	173.3	5.6	1.9	1	1	0	1	1	1	1	V-type	ATPase	116kDa	subunit	family
FlaC_arch	PF05377.6	gi|408405784|ref|YP_006863767.1|	-	0.12	12.3	1.0	0.58	10.0	0.7	2.2	1	0	0	1	1	1	0	Flagella	accessory	protein	C	(FlaC)
Prefoldin	PF02996.12	gi|408405784|ref|YP_006863767.1|	-	2.7	7.6	7.3	2.6	7.7	1.2	2.8	2	1	0	2	2	2	0	Prefoldin	subunit
vATP-synt_AC39	PF01992.11	gi|408405785|ref|YP_006863768.1|	-	3.6e-42	144.7	7.8	4.3e-42	144.4	5.4	1.0	1	0	0	1	1	1	1	ATP	synthase	(C/AC39)	subunit
Trigger_N	PF05697.8	gi|408405785|ref|YP_006863768.1|	-	0.012	15.4	0.2	0.043	13.6	0.0	2.0	2	0	0	2	2	2	0	Bacterial	trigger	factor	protein	(TF)
DUF4191	PF13829.1	gi|408405786|ref|YP_006863769.1|	-	0.15	11.1	0.0	0.15	11.1	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4191)
DUF4231	PF14015.1	gi|408405787|ref|YP_006863770.1|	-	0.0034	17.3	1.2	0.053	13.5	0.1	2.1	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF4231)
OrfB_Zn_ribbon	PF07282.6	gi|408405788|ref|YP_006863771.1|	-	9.9e-22	76.3	0.5	2e-21	75.3	0.3	1.6	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.14	gi|408405788|ref|YP_006863771.1|	-	1.2e-09	37.8	0.5	1.8e-09	37.3	0.4	1.3	1	0	0	1	1	1	1	Probable	transposase
OmpH	PF03938.9	gi|408405788|ref|YP_006863771.1|	-	0.022	14.6	0.0	0.038	13.9	0.0	1.3	1	0	0	1	1	1	0	Outer	membrane	protein	(OmpH-like)
DUF2209	PF09974.4	gi|408405788|ref|YP_006863771.1|	-	0.026	14.6	0.0	0.2	11.7	0.0	2.0	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2209)
PhnA_Zn_Ribbon	PF08274.7	gi|408405788|ref|YP_006863771.1|	-	0.035	13.8	2.3	0.067	12.9	1.6	1.4	1	0	0	1	1	1	0	PhnA	Zinc-Ribbon
TF_Zn_Ribbon	PF08271.7	gi|408405788|ref|YP_006863771.1|	-	0.052	12.8	2.4	0.097	12.0	1.7	1.4	1	0	0	1	1	1	0	TFIIB	zinc-binding
Ribosomal_L37ae	PF01780.14	gi|408405788|ref|YP_006863771.1|	-	0.055	13.3	0.3	0.13	12.1	0.2	1.6	1	0	0	1	1	1	0	Ribosomal	L37ae	protein	family
Methyltransf_26	PF13659.1	gi|408405788|ref|YP_006863771.1|	-	0.064	13.2	0.0	0.086	12.8	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
Zn_Tnp_IS1595	PF12760.2	gi|408405788|ref|YP_006863771.1|	-	0.073	12.8	2.0	0.14	11.9	1.4	1.5	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
DZR	PF12773.2	gi|408405788|ref|YP_006863771.1|	-	0.077	12.8	1.2	0.14	11.9	0.9	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
VIT1	PF01988.14	gi|408405789|ref|YP_006863772.1|	-	0.21	11.0	5.0	0.26	10.7	3.5	1.1	1	0	0	1	1	1	0	VIT	family
DUF4018	PF13210.1	gi|408405789|ref|YP_006863772.1|	-	0.46	9.8	5.2	1.2	8.4	3.6	1.7	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4018)
PyrI	PF01948.13	gi|408405791|ref|YP_006863774.1|	-	9e-37	125.0	2.2	9e-37	125.0	1.5	1.8	2	0	0	2	2	2	1	Aspartate	carbamoyltransferase	regulatory	chain,	allosteric	domain
PyrI_C	PF02748.10	gi|408405791|ref|YP_006863774.1|	-	5.9e-16	57.6	1.0	1.1e-15	56.8	0.7	1.4	1	0	0	1	1	1	1	Aspartate	carbamoyltransferase	regulatory	chain,	metal	binding	domain
DZR	PF12773.2	gi|408405792|ref|YP_006863775.1|	-	0.00031	20.4	8.2	0.0014	18.4	5.8	1.8	1	1	1	2	2	2	2	Double	zinc	ribbon
Ribosomal_L37e	PF01907.14	gi|408405792|ref|YP_006863775.1|	-	0.045	13.5	11.6	0.44	10.3	2.9	2.2	1	1	1	2	2	2	0	Ribosomal	protein	L37e
PHF5	PF03660.9	gi|408405792|ref|YP_006863775.1|	-	0.057	13.4	5.0	0.072	13.1	3.5	1.2	1	0	0	1	1	1	0	PHF5-like	protein
NMD3	PF04981.8	gi|408405792|ref|YP_006863775.1|	-	0.21	10.6	3.6	0.63	9.1	0.5	2.0	1	1	1	2	2	2	0	NMD3	family
zf-ribbon_3	PF13248.1	gi|408405792|ref|YP_006863775.1|	-	0.26	10.5	10.7	1.5	8.1	1.4	2.5	2	1	0	2	2	2	0	zinc-ribbon	domain
zf-RING_3	PF14369.1	gi|408405792|ref|YP_006863775.1|	-	0.44	10.5	0.0	0.44	10.5	0.0	3.4	3	1	0	3	3	3	0	zinc-finger
DnaJ_CXXCXGXG	PF00684.14	gi|408405792|ref|YP_006863775.1|	-	1.2	9.2	12.2	58	3.8	8.9	2.3	1	1	1	2	2	2	0	DnaJ	central	domain
zf-C2H2_7	PF15269.1	gi|408405792|ref|YP_006863775.1|	-	1.2	9.0	6.0	0.8	9.6	0.1	2.4	2	0	0	2	2	2	0	Zinc-finger
Fer4_2	PF12797.2	gi|408405792|ref|YP_006863775.1|	-	3.8	7.6	12.0	5	7.2	0.3	3.7	4	0	0	4	4	4	0	4Fe-4S	binding	domain
Cytochrom_c3_2	PF14537.1	gi|408405792|ref|YP_006863775.1|	-	3.8	7.9	6.2	19	5.6	4.3	1.9	1	1	0	1	1	1	0	Cytochrome	c3
zinc_ribbon_2	PF13240.1	gi|408405792|ref|YP_006863775.1|	-	4.4	6.9	15.0	1.8	8.1	0.1	3.5	4	0	0	4	4	4	0	zinc-ribbon	domain
NCD3G	PF07562.9	gi|408405792|ref|YP_006863775.1|	-	4.8	6.9	7.7	3.1	7.5	0.4	2.3	2	1	0	2	2	2	0	Nine	Cysteines	Domain	of	family	3	GPCR
XPA_N	PF01286.13	gi|408405792|ref|YP_006863775.1|	-	6	6.6	13.8	0.42	10.3	1.9	3.2	3	1	1	4	4	4	0	XPA	protein	N-terminal
FYVE	PF01363.16	gi|408405792|ref|YP_006863775.1|	-	7.8	6.4	8.3	1e+02	2.9	5.8	2.5	1	1	0	1	1	1	0	FYVE	zinc	finger
Redoxin	PF08534.5	gi|408405793|ref|YP_006863776.1|	-	1.8e-15	56.7	0.2	9.9e-15	54.3	0.0	2.1	1	1	1	2	2	2	1	Redoxin
AhpC-TSA	PF00578.16	gi|408405793|ref|YP_006863776.1|	-	2.6e-14	52.9	0.1	4.4e-14	52.2	0.0	1.3	1	0	0	1	1	1	1	AhpC/TSA	family
Thioredoxin_8	PF13905.1	gi|408405793|ref|YP_006863776.1|	-	1.6e-09	37.7	0.2	3e-09	36.8	0.2	1.4	1	0	0	1	1	1	1	Thioredoxin-like
GSHPx	PF00255.14	gi|408405793|ref|YP_006863776.1|	-	0.0019	17.5	0.0	0.0057	16.0	0.0	1.8	2	0	0	2	2	2	1	Glutathione	peroxidase
Thioredoxin_2	PF13098.1	gi|408405793|ref|YP_006863776.1|	-	0.021	14.9	0.1	0.066	13.4	0.0	1.8	2	0	0	2	2	2	0	Thioredoxin-like	domain
SCO1-SenC	PF02630.9	gi|408405793|ref|YP_006863776.1|	-	0.027	14.1	0.2	0.79	9.3	0.0	2.3	1	1	1	2	2	2	0	SCO1/SenC
DsbD	PF02683.10	gi|408405794|ref|YP_006863777.1|	-	4.3e-45	153.9	19.7	5.3e-44	150.3	13.6	1.9	1	1	0	1	1	1	1	Cytochrome	C	biogenesis	protein	transmembrane	region
DsbD_2	PF13386.1	gi|408405794|ref|YP_006863777.1|	-	3.9e-07	30.0	17.3	5.6e-07	29.4	12.0	1.3	1	0	0	1	1	1	1	Cytochrome	C	biogenesis	protein	transmembrane	region
DUF2182	PF09948.4	gi|408405794|ref|YP_006863777.1|	-	0.0049	16.8	4.5	0.047	13.6	3.1	2.1	1	1	0	1	1	1	1	Predicted	metal-binding	integral	membrane	protein	(DUF2182)
DUF2781	PF10914.3	gi|408405794|ref|YP_006863777.1|	-	0.19	11.4	3.0	0.97	9.2	0.1	2.6	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF2781)
DUF2910	PF11139.3	gi|408405794|ref|YP_006863777.1|	-	0.25	10.4	14.3	0.7	8.9	9.9	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2910)
TrbC	PF04956.8	gi|408405794|ref|YP_006863777.1|	-	0.73	9.8	12.9	2.8	7.9	2.3	2.9	2	1	0	2	2	2	0	TrbC/VIRB2	family
Tmemb_14	PF03647.8	gi|408405795|ref|YP_006863778.1|	-	0.036	14.4	2.1	0.036	14.4	1.5	1.5	2	0	0	2	2	2	0	Transmembrane	proteins	14C
DUF4077	PF13295.1	gi|408405795|ref|YP_006863778.1|	-	0.21	11.3	5.2	0.24	11.0	3.6	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4077)
DUF3816	PF12822.2	gi|408405795|ref|YP_006863778.1|	-	0.21	11.4	5.8	0.22	11.3	4.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3816)
DUF2759	PF10958.3	gi|408405795|ref|YP_006863778.1|	-	0.79	9.3	8.4	0.38	10.3	2.5	2.7	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2759)
DUF2614	PF11023.3	gi|408405795|ref|YP_006863778.1|	-	4.7	7.0	5.7	4.1	7.2	3.3	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2614)
HTH_5	PF01022.15	gi|408405796|ref|YP_006863779.1|	-	2.3e-08	33.5	0.0	4.3e-08	32.6	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.2	gi|408405796|ref|YP_006863779.1|	-	9.6e-07	28.5	0.0	2.1e-06	27.4	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
TrmB	PF01978.14	gi|408405796|ref|YP_006863779.1|	-	1.9e-05	24.3	0.0	2.8e-05	23.7	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.1	gi|408405796|ref|YP_006863779.1|	-	2.2e-05	23.7	0.0	4.1e-05	22.8	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.2	gi|408405796|ref|YP_006863779.1|	-	0.0042	16.7	0.0	0.01	15.4	0.0	1.8	1	1	0	1	1	1	1	MarR	family
HTH_11	PF08279.7	gi|408405796|ref|YP_006863779.1|	-	0.0081	15.7	0.0	0.018	14.6	0.0	1.6	1	0	0	1	1	1	1	HTH	domain
HTH_45	PF14947.1	gi|408405796|ref|YP_006863779.1|	-	0.02	14.7	0.1	0.031	14.0	0.0	1.2	1	0	0	1	1	1	0	Winged	helix-turn-helix
HTH_19	PF12844.2	gi|408405796|ref|YP_006863779.1|	-	0.023	14.7	0.0	0.043	13.8	0.0	1.6	1	1	0	1	1	1	0	Helix-turn-helix	domain
MarR	PF01047.17	gi|408405796|ref|YP_006863779.1|	-	0.026	14.2	0.0	0.045	13.4	0.0	1.4	1	0	0	1	1	1	0	MarR	family
CtsR	PF05848.6	gi|408405796|ref|YP_006863779.1|	-	0.03	14.2	0.1	0.038	13.9	0.1	1.0	1	0	0	1	1	1	0	Firmicute	transcriptional	repressor	of	class	III	stress	genes	(CtsR)
HTH_10	PF04967.7	gi|408405796|ref|YP_006863779.1|	-	0.031	13.8	0.0	0.056	13.0	0.0	1.5	1	0	0	1	1	1	0	HTH	DNA	binding	domain
DUF4423	PF14394.1	gi|408405796|ref|YP_006863779.1|	-	0.041	13.4	0.0	0.069	12.6	0.0	1.3	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
Phage_rep_org_N	PF09681.5	gi|408405796|ref|YP_006863779.1|	-	0.048	13.2	0.0	0.049	13.1	0.0	1.1	1	0	0	1	1	1	0	N-terminal	phage	replisome	organiser	(Phage_rep_org_N)
HTH_28	PF13518.1	gi|408405796|ref|YP_006863779.1|	-	0.06	13.3	0.0	0.19	11.7	0.0	1.8	1	1	1	2	2	2	0	Helix-turn-helix	domain
Phage_rep_O	PF04492.8	gi|408405796|ref|YP_006863779.1|	-	0.067	13.4	0.0	0.096	12.9	0.0	1.2	1	0	0	1	1	1	0	Bacteriophage	replication	protein	O
MotA_activ	PF09114.5	gi|408405796|ref|YP_006863779.1|	-	0.074	12.8	0.1	0.088	12.5	0.1	1.3	1	0	0	1	1	1	0	Transcription	factor	MotA,	activation	domain
Rrf2	PF02082.15	gi|408405796|ref|YP_006863779.1|	-	0.083	13.0	0.0	0.14	12.3	0.0	1.3	1	0	0	1	1	1	0	Transcriptional	regulator
B-block_TFIIIC	PF04182.7	gi|408405796|ref|YP_006863779.1|	-	0.1	12.4	0.0	0.14	12.0	0.0	1.4	1	1	0	1	1	1	0	B-block	binding	subunit	of	TFIIIC
DEAD	PF00270.24	gi|408405797|ref|YP_006863780.1|	-	2.3e-52	176.8	0.5	1.8e-50	170.7	0.0	2.5	2	1	1	3	3	3	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.26	gi|408405797|ref|YP_006863780.1|	-	6.8e-28	96.3	0.2	2.6e-27	94.4	0.1	2.0	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
SNF2_N	PF00176.18	gi|408405797|ref|YP_006863780.1|	-	2e-05	23.5	0.0	3.4e-05	22.8	0.0	1.3	1	0	0	1	1	1	1	SNF2	family	N-terminal	domain
AAA_30	PF13604.1	gi|408405797|ref|YP_006863780.1|	-	0.0002	20.9	0.2	0.018	14.6	0.0	2.6	2	1	0	2	2	2	1	AAA	domain
DUF1253	PF06862.7	gi|408405797|ref|YP_006863780.1|	-	0.00035	19.1	0.1	0.0052	15.2	0.0	2.4	2	1	0	2	2	2	1	Protein	of	unknown	function	(DUF1253)
ResIII	PF04851.10	gi|408405797|ref|YP_006863780.1|	-	0.00043	20.1	0.1	0.0011	18.8	0.0	1.7	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
Helicase_RecD	PF05127.9	gi|408405797|ref|YP_006863780.1|	-	0.001	18.7	0.0	0.0032	17.1	0.0	1.8	2	0	0	2	2	2	1	Helicase
Flavi_DEAD	PF07652.9	gi|408405797|ref|YP_006863780.1|	-	0.0014	18.3	0.1	0.26	11.0	0.1	2.5	2	1	0	2	2	2	1	Flavivirus	DEAD	domain
CMS1	PF14617.1	gi|408405797|ref|YP_006863780.1|	-	0.0031	16.6	0.8	0.0067	15.5	0.4	1.6	1	1	0	1	1	1	1	U3-containing	90S	pre-ribosomal	complex	subunit
zinc_ribbon_2	PF13240.1	gi|408405798|ref|YP_006863781.1|	-	0.00052	19.4	1.0	0.00087	18.6	0.7	1.4	1	0	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.2	gi|408405798|ref|YP_006863781.1|	-	0.00084	19.1	0.6	0.0013	18.4	0.4	1.3	1	0	0	1	1	1	1	Double	zinc	ribbon
UPF0547	PF10571.4	gi|408405798|ref|YP_006863781.1|	-	0.0011	18.6	3.0	0.0017	18.0	2.1	1.3	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0547
zf-ribbon_3	PF13248.1	gi|408405798|ref|YP_006863781.1|	-	0.0014	17.7	1.0	0.0022	17.1	0.7	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
DUF2116	PF09889.4	gi|408405798|ref|YP_006863781.1|	-	0.041	13.6	1.1	0.079	12.7	0.8	1.5	1	0	0	1	1	1	0	Uncharacterized	protein	containing	a	Zn-ribbon	(DUF2116)
zf-DHHC	PF01529.15	gi|408405798|ref|YP_006863781.1|	-	0.042	13.2	0.5	0.1	11.9	0.1	1.7	2	0	0	2	2	2	0	DHHC	palmitoyltransferase
WASH-7_N	PF14745.1	gi|408405798|ref|YP_006863781.1|	-	0.062	11.4	0.0	0.078	11.1	0.0	1.0	1	0	0	1	1	1	0	WASH	complex	subunit	7,	N-terminal
Ecl1	PF12855.2	gi|408405798|ref|YP_006863781.1|	-	0.14	11.5	1.2	0.32	10.3	0.8	1.6	1	0	0	1	1	1	0	Life-span	regulatory	factor
NOB1_Zn_bind	PF08772.6	gi|408405798|ref|YP_006863781.1|	-	0.19	11.5	2.3	0.73	9.6	1.1	2.1	2	0	0	2	2	2	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
zinc_ribbon_2	PF13240.1	gi|408405799|ref|YP_006863782.1|	-	4e-08	32.4	3.7	6.9e-08	31.7	2.6	1.4	1	0	0	1	1	1	1	zinc-ribbon	domain
zf-ribbon_3	PF13248.1	gi|408405799|ref|YP_006863782.1|	-	5.6e-07	28.5	4.1	1e-06	27.7	2.9	1.5	1	0	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.2	gi|408405799|ref|YP_006863782.1|	-	8.3e-06	25.5	1.2	1.4e-05	24.8	0.8	1.3	1	0	0	1	1	1	1	Double	zinc	ribbon
Nudix_N_2	PF14803.1	gi|408405799|ref|YP_006863782.1|	-	0.011	15.4	5.4	0.54	9.9	0.1	2.7	2	0	0	2	2	2	0	Nudix	N-terminal
RNA_POL_M_15KD	PF02150.11	gi|408405799|ref|YP_006863782.1|	-	0.022	14.4	2.8	1.7	8.4	0.1	2.5	2	0	0	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
zf-DHHC	PF01529.15	gi|408405799|ref|YP_006863782.1|	-	0.026	13.9	0.0	0.026	13.9	0.0	1.1	1	0	0	1	1	1	0	DHHC	palmitoyltransferase
RRN7	PF11781.3	gi|408405799|ref|YP_006863782.1|	-	0.052	13.0	1.4	2.3	7.7	0.1	2.3	2	0	0	2	2	2	0	RNA	polymerase	I-specific	transcription	initiation	factor	Rrn7
C1_1	PF00130.17	gi|408405799|ref|YP_006863782.1|	-	0.18	11.5	1.7	0.28	10.9	1.1	1.2	1	0	0	1	1	1	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
Prok-RING_1	PF14446.1	gi|408405799|ref|YP_006863782.1|	-	0.19	11.4	1.8	0.32	10.7	1.3	1.2	1	0	0	1	1	1	0	Prokaryotic	RING	finger	family	1
NOB1_Zn_bind	PF08772.6	gi|408405799|ref|YP_006863782.1|	-	0.34	10.7	8.6	1.9	8.3	0.8	2.5	1	1	1	2	2	2	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
UPF0547	PF10571.4	gi|408405799|ref|YP_006863782.1|	-	0.43	10.3	2.6	0.96	9.2	1.8	1.5	1	1	0	1	1	1	0	Uncharacterised	protein	family	UPF0547
YhfH	PF14149.1	gi|408405799|ref|YP_006863782.1|	-	0.61	9.9	6.0	2.6	7.9	0.2	2.3	1	1	1	2	2	2	0	YhfH-like	protein
RecR	PF02132.10	gi|408405799|ref|YP_006863782.1|	-	2.7	7.4	4.5	12	5.3	0.3	2.2	1	1	1	2	2	2	0	RecR	protein
zf-NADH-PPase	PF09297.6	gi|408405799|ref|YP_006863782.1|	-	4.2	6.9	6.4	8.1	6.0	0.6	2.3	1	1	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
AAA_18	PF13238.1	gi|408405800|ref|YP_006863783.1|	-	4e-13	49.7	0.1	5.6e-13	49.3	0.1	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_17	PF13207.1	gi|408405800|ref|YP_006863783.1|	-	3.6e-08	34.2	0.1	5.3e-08	33.7	0.1	1.3	1	1	0	1	1	1	1	AAA	domain
AAA	PF00004.24	gi|408405800|ref|YP_006863783.1|	-	0.00015	21.9	0.1	0.00031	20.9	0.0	1.6	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
SKI	PF01202.17	gi|408405800|ref|YP_006863783.1|	-	0.0048	16.7	0.3	0.016	15.1	0.2	1.7	1	1	0	1	1	1	1	Shikimate	kinase
UPF0175	PF03683.8	gi|408405800|ref|YP_006863783.1|	-	0.018	14.4	0.1	0.039	13.4	0.0	1.7	1	1	0	1	1	1	0	Uncharacterised	protein	family	(UPF0175)
NTPase_1	PF03266.10	gi|408405800|ref|YP_006863783.1|	-	0.044	13.4	0.6	0.15	11.7	0.2	2.0	1	1	0	2	2	2	0	NTPase
RuvB_N	PF05496.7	gi|408405800|ref|YP_006863783.1|	-	0.048	12.6	0.0	0.081	11.9	0.0	1.3	1	0	0	1	1	1	0	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_19	PF13245.1	gi|408405800|ref|YP_006863783.1|	-	0.055	13.2	0.4	0.15	11.8	0.3	1.7	1	0	0	1	1	1	0	Part	of	AAA	domain
T2SE	PF00437.15	gi|408405800|ref|YP_006863783.1|	-	0.085	11.7	0.5	0.17	10.7	0.2	1.5	2	0	0	2	2	2	0	Type	II/IV	secretion	system	protein
Cytidylate_kin2	PF13189.1	gi|408405800|ref|YP_006863783.1|	-	0.11	12.4	0.2	11	5.8	0.0	2.2	1	1	1	2	2	2	0	Cytidylate	kinase-like	family
KTI12	PF08433.5	gi|408405800|ref|YP_006863783.1|	-	0.15	11.2	0.0	0.28	10.3	0.0	1.5	1	0	0	1	1	1	0	Chromatin	associated	protein	KTI12
NPP1	PF05630.6	gi|408405801|ref|YP_006863784.1|	-	0.033	13.9	0.3	0.035	13.8	0.2	1.2	1	0	0	1	1	1	0	Necrosis	inducing	protein	(NPP1)
AHSA1	PF08327.6	gi|408405802|ref|YP_006863785.1|	-	0.028	14.5	0.1	0.035	14.2	0.1	1.2	1	0	0	1	1	1	0	Activator	of	Hsp90	ATPase	homolog	1-like	protein
DUF2414	PF10309.4	gi|408405802|ref|YP_006863785.1|	-	0.045	13.4	0.5	0.081	12.6	0.4	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2414)
DUF2218	PF09981.4	gi|408405802|ref|YP_006863785.1|	-	0.19	11.9	1.4	0.26	11.4	1.0	1.2	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2218)
Lsm_C	PF14894.1	gi|408405803|ref|YP_006863786.1|	-	5.2e-23	80.3	1.8	1.3e-22	79.0	0.1	2.0	2	0	0	2	2	2	1	Lsm	C-terminal
LSM	PF01423.17	gi|408405803|ref|YP_006863786.1|	-	8.2e-05	22.0	0.5	0.00014	21.3	0.3	1.4	1	0	0	1	1	1	1	LSM	domain
SM-ATX	PF14438.1	gi|408405803|ref|YP_006863786.1|	-	0.00032	20.5	0.1	0.00053	19.8	0.0	1.3	1	0	0	1	1	1	1	Ataxin	2	SM	domain
LSM14	PF12701.2	gi|408405803|ref|YP_006863786.1|	-	0.00052	19.7	0.0	0.00095	18.9	0.0	1.6	1	1	0	1	1	1	1	Scd6-like	Sm	domain
BPL_C	PF02237.12	gi|408405803|ref|YP_006863786.1|	-	0.073	12.7	0.0	0.18	11.4	0.0	1.7	1	0	0	1	1	1	0	Biotin	protein	ligase	C	terminal	domain
TGT	PF01702.13	gi|408405804|ref|YP_006863787.1|	-	1.4e-49	168.5	0.0	2.1e-49	167.9	0.0	1.2	1	0	0	1	1	1	1	Queuine	tRNA-ribosyltransferase
Endonuclease_5	PF04493.9	gi|408405805|ref|YP_006863788.1|	-	2.3e-42	144.7	0.4	3.8e-42	143.9	0.3	1.2	1	1	0	1	1	1	1	Endonuclease	V
Adeno_E3	PF06040.6	gi|408405806|ref|YP_006863789.1|	-	2.4	8.1	6.2	0.23	11.3	0.3	2.2	3	0	0	3	3	3	0	Adenovirus	E3	protein
Fer4	PF00037.22	gi|408405807|ref|YP_006863790.1|	-	6.8e-13	47.6	10.8	1e-07	31.2	0.3	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_6	PF12837.2	gi|408405807|ref|YP_006863790.1|	-	8.9e-11	41.1	10.2	1.3e-05	24.8	0.6	2.1	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.2	gi|408405807|ref|YP_006863790.1|	-	3.6e-10	40.0	4.5	5.1e-10	39.5	3.1	1.2	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|408405807|ref|YP_006863790.1|	-	4.2e-09	36.0	3.2	6.1e-09	35.5	2.2	1.3	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_2	PF12797.2	gi|408405807|ref|YP_006863790.1|	-	4.7e-09	35.6	9.2	0.00028	20.6	1.6	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.1	gi|408405807|ref|YP_006863790.1|	-	7.7e-08	32.0	1.4	1.1e-07	31.5	1.0	1.3	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_13	PF13370.1	gi|408405807|ref|YP_006863790.1|	-	4.2e-07	30.2	5.4	0.0038	17.5	1.0	2.3	2	0	0	2	2	2	2	4Fe-4S	single	cluster	domain
Fer4_15	PF13459.1	gi|408405807|ref|YP_006863790.1|	-	5.2e-07	30.1	9.6	7.9e-05	23.1	0.9	2.4	1	1	1	2	2	2	2	4Fe-4S	single	cluster	domain
Fer4_9	PF13187.1	gi|408405807|ref|YP_006863790.1|	-	1.2e-06	28.6	5.8	4.3e-06	26.8	4.2	1.7	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_4	PF12800.2	gi|408405807|ref|YP_006863790.1|	-	2.9e-06	27.1	8.6	0.01	16.1	0.1	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_8	PF13183.1	gi|408405807|ref|YP_006863790.1|	-	1.1e-05	25.3	3.6	2.4e-05	24.2	2.5	1.5	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_16	PF13484.1	gi|408405807|ref|YP_006863790.1|	-	7.7e-05	23.3	1.9	0.17	12.6	0.0	2.2	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_17	PF13534.1	gi|408405807|ref|YP_006863790.1|	-	0.00018	21.7	6.1	0.0045	17.2	4.2	2.1	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_3	PF12798.2	gi|408405807|ref|YP_006863790.1|	-	0.00072	19.9	15.1	0.071	13.7	1.2	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_18	PF13746.1	gi|408405807|ref|YP_006863790.1|	-	0.0035	17.7	7.1	0.23	11.9	1.8	2.1	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Methyltransf_23	PF13489.1	gi|408405809|ref|YP_006863792.1|	-	0.00079	19.1	0.0	0.0015	18.3	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
MetW	PF07021.7	gi|408405809|ref|YP_006863792.1|	-	0.052	12.9	0.0	0.083	12.2	0.0	1.3	1	0	0	1	1	1	0	Methionine	biosynthesis	protein	MetW
Methyltransf_23	PF13489.1	gi|408405810|ref|YP_006863793.1|	-	0.0017	18.0	0.0	0.0029	17.3	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
MetW	PF07021.7	gi|408405810|ref|YP_006863793.1|	-	0.049	12.9	0.0	0.086	12.2	0.0	1.4	1	0	0	1	1	1	0	Methionine	biosynthesis	protein	MetW
Methyltransf_31	PF13847.1	gi|408405810|ref|YP_006863793.1|	-	0.066	12.8	0.0	0.14	11.7	0.0	1.7	1	0	0	1	1	1	0	Methyltransferase	domain
Beta-Casp	PF10996.3	gi|408405811|ref|YP_006863794.1|	-	1.2e-17	64.0	0.0	2.7e-17	62.8	0.0	1.6	2	0	0	2	2	2	1	Beta-Casp	domain
Lactamase_B	PF00753.22	gi|408405811|ref|YP_006863794.1|	-	5e-13	49.1	0.4	6.9e-10	38.8	0.1	2.3	2	0	0	2	2	2	2	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.2	gi|408405811|ref|YP_006863794.1|	-	5.8e-13	48.8	0.1	1.3e-12	47.6	0.0	1.5	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
RMMBL	PF07521.7	gi|408405811|ref|YP_006863794.1|	-	8.8e-07	28.6	0.3	4.2e-06	26.4	0.0	2.3	2	0	0	2	2	2	1	RNA-metabolising	metallo-beta-lactamase
Lactamase_B_3	PF13483.1	gi|408405811|ref|YP_006863794.1|	-	2.2e-05	24.2	0.2	5.2e-05	23.0	0.1	1.6	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
DUF2175	PF09943.4	gi|408405812|ref|YP_006863795.1|	-	0.014	15.4	0.4	0.016	15.2	0.3	1.1	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2175)
C6_DPF	PF10170.4	gi|408405812|ref|YP_006863795.1|	-	0.016	15.2	0.5	0.02	14.9	0.4	1.1	1	0	0	1	1	1	0	Cysteine-rich	domain
zf-FCS	PF06467.9	gi|408405812|ref|YP_006863795.1|	-	0.044	13.4	1.3	0.071	12.7	0.9	1.6	1	1	0	1	1	1	0	MYM-type	Zinc	finger	with	FCS	sequence	motif
DUF2039	PF10217.4	gi|408405812|ref|YP_006863795.1|	-	0.11	12.5	1.6	0.15	12.1	1.1	1.3	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2039)
zf-C4pol	PF14260.1	gi|408405812|ref|YP_006863795.1|	-	0.13	12.3	1.1	0.15	12.0	0.8	1.2	1	0	0	1	1	1	0	C4-type	zinc-finger	of	DNA	polymerase	delta
DZR	PF12773.2	gi|408405812|ref|YP_006863795.1|	-	0.24	11.2	1.7	5.4	6.9	0.0	2.0	1	1	0	1	1	1	0	Double	zinc	ribbon
DUF581	PF04570.9	gi|408405812|ref|YP_006863795.1|	-	0.47	9.7	2.7	0.84	8.9	1.9	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF581)
Bactofilin	PF04519.8	gi|408405813|ref|YP_006863796.1|	-	0.00047	20.1	2.6	0.32	11.0	0.2	2.1	1	1	1	2	2	2	2	Polymer-forming	cytoskeletal
PcrB	PF01884.12	gi|408405813|ref|YP_006863796.1|	-	0.086	12.0	0.1	0.13	11.4	0.0	1.4	2	0	0	2	2	2	0	PcrB	family
tRNA-synt_1e	PF01406.14	gi|408405814|ref|YP_006863797.1|	-	1.1e-124	415.4	0.0	1.6e-124	414.8	0.0	1.2	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(C)	catalytic	domain
tRNA-synt_1g	PF09334.6	gi|408405814|ref|YP_006863797.1|	-	4.8e-15	55.1	1.2	9e-08	31.1	0.2	2.2	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(M)
DALR_2	PF09190.6	gi|408405814|ref|YP_006863797.1|	-	9.1e-10	38.6	2.7	2.7e-09	37.1	1.9	1.8	1	0	0	1	1	1	1	DALR	domain
tRNA-synt_1	PF00133.17	gi|408405814|ref|YP_006863797.1|	-	6.6e-07	27.7	0.1	7.2e-05	20.9	0.0	2.3	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(I,	L,	M	and	V)
tRNA-synt_1f	PF01921.13	gi|408405814|ref|YP_006863797.1|	-	2.9e-05	22.9	0.1	0.0062	15.2	0.0	2.2	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(K)
tRNA-synt_1d	PF00750.14	gi|408405814|ref|YP_006863797.1|	-	0.006	15.4	0.3	0.13	11.0	0.0	2.4	3	0	0	3	3	3	1	tRNA	synthetases	class	I	(R)
tRNA-synt_1c	PF00749.16	gi|408405814|ref|YP_006863797.1|	-	0.0069	15.0	0.8	2.7	6.5	0.2	2.9	2	1	0	2	2	2	2	tRNA	synthetases	class	I	(E	and	Q),	catalytic	domain
ARPC4	PF05856.7	gi|408405814|ref|YP_006863797.1|	-	0.043	13.2	0.6	0.085	12.2	0.1	1.7	2	0	0	2	2	2	0	ARP2/3	complex	20	kDa	subunit	(ARPC4)
HIGH_NTase1	PF05636.6	gi|408405814|ref|YP_006863797.1|	-	0.044	12.8	0.2	0.092	11.7	0.2	1.5	1	0	0	1	1	1	0	HIGH	Nucleotidyl	Transferase
DUF1858	PF08984.6	gi|408405814|ref|YP_006863797.1|	-	0.1	12.2	0.0	0.21	11.2	0.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1858)
Pyridox_oxidase	PF01243.15	gi|408405815|ref|YP_006863798.1|	-	2.3e-13	49.9	0.0	4e-13	49.1	0.0	1.4	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Pyridox_ox_2	PF12900.2	gi|408405815|ref|YP_006863798.1|	-	2.5e-08	33.8	0.0	3e-08	33.6	0.0	1.1	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Pyridox_oxase_2	PF12766.2	gi|408405815|ref|YP_006863798.1|	-	0.0089	16.3	0.0	0.014	15.6	0.0	1.4	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
DUF447	PF04289.7	gi|408405815|ref|YP_006863798.1|	-	0.1	12.1	0.0	0.13	11.8	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF447)
Rieske	PF00355.21	gi|408405816|ref|YP_006863799.1|	-	9.5e-15	53.9	0.0	1e-14	53.8	0.0	1.0	1	0	0	1	1	1	1	Rieske	[2Fe-2S]	domain
Rieske_2	PF13806.1	gi|408405816|ref|YP_006863799.1|	-	5.4e-14	51.7	0.0	6e-14	51.6	0.0	1.0	1	0	0	1	1	1	1	Rieske-like	[2Fe-2S]	domain
DUF3918	PF13056.1	gi|408405817|ref|YP_006863800.1|	-	0.68	9.3	2.8	1.6	8.1	1.9	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3918)
AdoHcyase	PF05221.12	gi|408405818|ref|YP_006863801.1|	-	7.7e-55	185.7	0.0	9.5e-55	185.4	0.0	1.0	1	0	0	1	1	1	1	S-adenosyl-L-homocysteine	hydrolase
AdoHcyase_NAD	PF00670.16	gi|408405818|ref|YP_006863801.1|	-	6.1e-54	182.2	1.5	8.4e-54	181.7	0.2	1.9	2	0	0	2	2	2	1	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
2-Hacid_dh_C	PF02826.14	gi|408405818|ref|YP_006863801.1|	-	4e-11	42.3	0.1	1.2e-10	40.8	0.1	1.9	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
IlvN	PF07991.7	gi|408405818|ref|YP_006863801.1|	-	6.3e-07	28.9	0.0	1.2e-06	27.9	0.0	1.5	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
AlaDh_PNT_C	PF01262.16	gi|408405818|ref|YP_006863801.1|	-	0.00012	21.6	0.8	0.0038	16.7	0.3	2.5	2	0	0	2	2	2	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
TrkA_N	PF02254.13	gi|408405818|ref|YP_006863801.1|	-	0.00082	19.3	0.0	0.0026	17.7	0.0	1.9	1	0	0	1	1	1	1	TrkA-N	domain
THF_DHG_CYH_C	PF02882.14	gi|408405818|ref|YP_006863801.1|	-	0.0038	16.3	0.2	0.021	13.9	0.1	2.0	1	1	0	1	1	1	1	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
3HCDH_N	PF02737.13	gi|408405818|ref|YP_006863801.1|	-	0.078	12.6	1.4	0.28	10.8	0.3	2.2	2	0	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
tRNA-synt_1g	PF09334.6	gi|408405819|ref|YP_006863802.1|	-	8.6e-134	446.0	0.1	1.1e-133	445.7	0.1	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(M)
tRNA-synt_1	PF00133.17	gi|408405819|ref|YP_006863802.1|	-	2.1e-18	65.6	0.4	6.9e-09	34.2	0.1	3.9	3	1	0	3	3	3	3	tRNA	synthetases	class	I	(I,	L,	M	and	V)
Anticodon_1	PF08264.8	gi|408405819|ref|YP_006863802.1|	-	8.8e-14	51.5	0.0	1.8e-13	50.5	0.0	1.5	1	0	0	1	1	1	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1e	PF01406.14	gi|408405819|ref|YP_006863802.1|	-	1.7e-11	43.7	0.2	0.00011	21.4	0.1	2.2	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(C)	catalytic	domain
tRNA-synt_1f	PF01921.13	gi|408405819|ref|YP_006863802.1|	-	0.0026	16.5	0.2	0.086	11.5	0.0	2.8	2	1	1	3	3	3	1	tRNA	synthetases	class	I	(K)
zf-ribbon_3	PF13248.1	gi|408405819|ref|YP_006863802.1|	-	0.0052	15.9	4.9	0.17	11.1	3.4	2.4	1	1	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.2	gi|408405819|ref|YP_006863802.1|	-	0.12	12.2	6.0	0.21	11.4	4.1	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
TF_Zn_Ribbon	PF08271.7	gi|408405819|ref|YP_006863802.1|	-	2.4	7.5	6.1	0.56	9.5	1.2	2.1	2	0	0	2	2	2	0	TFIIB	zinc-binding
zinc_ribbon_2	PF13240.1	gi|408405819|ref|YP_006863802.1|	-	9.7	5.8	11.7	3.9	7.0	4.3	2.9	2	1	0	2	2	2	0	zinc-ribbon	domain
CTP_transf_2	PF01467.21	gi|408405820|ref|YP_006863803.1|	-	4.6e-14	52.7	0.0	5.7e-14	52.4	0.0	1.1	1	0	0	1	1	1	1	Cytidylyltransferase
TrkA_N	PF02254.13	gi|408405820|ref|YP_006863803.1|	-	0.0093	15.9	0.0	0.082	12.9	0.0	2.1	2	0	0	2	2	2	1	TrkA-N	domain
MS_channel	PF00924.13	gi|408405821|ref|YP_006863804.1|	-	6.3e-09	35.4	3.0	1.8e-08	33.9	2.0	1.6	1	1	0	1	1	1	1	Mechanosensitive	ion	channel
Pirin	PF02678.11	gi|408405823|ref|YP_006863806.1|	-	8.5e-32	109.2	0.9	1.7e-31	108.2	0.2	1.8	2	1	0	2	2	2	1	Pirin
Pirin_C	PF05726.8	gi|408405823|ref|YP_006863806.1|	-	1.3e-06	28.4	0.0	0.00015	21.7	0.0	2.2	2	0	0	2	2	2	2	Pirin	C-terminal	cupin	domain
Cupin_2	PF07883.6	gi|408405823|ref|YP_006863806.1|	-	5.4e-05	22.6	3.6	0.0011	18.4	0.1	3.2	3	1	1	4	4	4	1	Cupin	domain
FMN_red	PF03358.10	gi|408405824|ref|YP_006863807.1|	-	4.5e-29	100.9	0.0	5.9e-29	100.5	0.0	1.1	1	0	0	1	1	1	1	NADPH-dependent	FMN	reductase
Flavodoxin_2	PF02525.12	gi|408405824|ref|YP_006863807.1|	-	8.9e-11	41.6	0.0	1.2e-10	41.2	0.0	1.2	1	0	0	1	1	1	1	Flavodoxin-like	fold
Flavodoxin_5	PF12724.2	gi|408405824|ref|YP_006863807.1|	-	0.002	18.1	0.0	0.0037	17.2	0.0	1.5	1	1	0	1	1	1	1	Flavodoxin	domain
Usp	PF00582.21	gi|408405824|ref|YP_006863807.1|	-	0.047	13.8	0.3	0.076	13.2	0.2	1.3	1	0	0	1	1	1	0	Universal	stress	protein	family
Trypsin_2	PF13365.1	gi|408405826|ref|YP_006863809.1|	-	7.9e-24	83.9	0.7	1.2e-23	83.4	0.5	1.3	1	0	0	1	1	1	1	Trypsin-like	peptidase	domain
PDZ_2	PF13180.1	gi|408405826|ref|YP_006863809.1|	-	4.1e-16	58.6	0.1	5.1e-15	55.1	0.0	2.4	2	0	0	2	2	2	1	PDZ	domain
Trypsin	PF00089.21	gi|408405826|ref|YP_006863809.1|	-	1.4e-13	50.9	0.1	3.3e-13	49.7	0.0	1.5	1	1	0	1	1	1	1	Trypsin
PDZ	PF00595.19	gi|408405826|ref|YP_006863809.1|	-	7.7e-07	29.2	0.0	2.5e-06	27.5	0.0	1.9	2	0	0	2	2	2	1	PDZ	domain	(Also	known	as	DHR	or	GLGF)
Peptidase_S46	PF10459.4	gi|408405826|ref|YP_006863809.1|	-	0.0044	15.4	0.3	0.86	7.9	0.1	2.3	3	0	0	3	3	3	2	Peptidase	S46
Tricorn_PDZ	PF14685.1	gi|408405826|ref|YP_006863809.1|	-	0.029	14.1	0.0	0.15	11.8	0.0	2.2	2	1	0	2	2	2	0	Tricorn	protease	PDZ	domain
GRASP55_65	PF04495.9	gi|408405826|ref|YP_006863809.1|	-	0.046	13.7	0.0	0.12	12.3	0.0	1.7	1	0	0	1	1	1	0	GRASP55/65	PDZ-like	domain
PDZ_1	PF12812.2	gi|408405826|ref|YP_006863809.1|	-	0.05	13.4	0.0	0.11	12.3	0.0	1.6	1	0	0	1	1	1	0	PDZ-like	domain
Peptidase_S7	PF00949.16	gi|408405826|ref|YP_006863809.1|	-	0.12	11.7	0.1	0.22	10.9	0.1	1.3	1	0	0	1	1	1	0	Peptidase	S7,	Flavivirus	NS3	serine	protease
DUF31	PF01732.11	gi|408405826|ref|YP_006863809.1|	-	0.18	11.0	0.2	1.6	7.9	0.1	2.3	2	1	1	3	3	3	0	Putative	peptidase	(DUF31)
SUI1	PF01253.17	gi|408405827|ref|YP_006863810.1|	-	7e-20	70.6	1.9	8.3e-20	70.3	1.3	1.1	1	0	0	1	1	1	1	Translation	initiation	factor	SUI1
Img2	PF05046.9	gi|408405827|ref|YP_006863810.1|	-	0.05	13.8	0.2	0.076	13.2	0.1	1.4	1	1	0	1	1	1	0	Mitochondrial	large	subunit	ribosomal	protein	(Img2)
TRIQK	PF15168.1	gi|408405827|ref|YP_006863810.1|	-	0.081	12.8	0.1	0.11	12.3	0.1	1.3	1	0	0	1	1	1	0	Triple	QxxK/R	motif-containing	protein	family
DUF2250	PF10007.4	gi|408405828|ref|YP_006863811.1|	-	4.2e-06	26.5	0.1	0.0013	18.6	0.1	3.0	2	1	1	3	3	3	1	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
MarR	PF01047.17	gi|408405828|ref|YP_006863811.1|	-	7.2e-06	25.6	0.1	2.2e-05	24.0	0.0	1.8	2	0	0	2	2	2	1	MarR	family
MarR_2	PF12802.2	gi|408405828|ref|YP_006863811.1|	-	0.00013	21.5	0.0	0.00031	20.3	0.0	1.6	2	0	0	2	2	1	1	MarR	family
HTH_5	PF01022.15	gi|408405828|ref|YP_006863811.1|	-	0.00024	20.6	0.1	0.00052	19.6	0.1	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_24	PF13412.1	gi|408405828|ref|YP_006863811.1|	-	0.0013	18.1	0.0	0.0024	17.2	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.14	gi|408405828|ref|YP_006863811.1|	-	0.0065	16.1	0.0	0.02	14.6	0.0	1.9	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_45	PF14947.1	gi|408405828|ref|YP_006863811.1|	-	0.0072	16.1	0.0	0.024	14.4	0.0	1.9	1	1	1	2	2	2	1	Winged	helix-turn-helix
HTH_IclR	PF09339.5	gi|408405828|ref|YP_006863811.1|	-	0.01	15.4	0.1	0.029	13.9	0.1	1.8	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_11	PF08279.7	gi|408405828|ref|YP_006863811.1|	-	0.024	14.2	0.0	0.051	13.2	0.0	1.6	1	0	0	1	1	1	0	HTH	domain
HTH_20	PF12840.2	gi|408405828|ref|YP_006863811.1|	-	0.026	14.3	0.1	0.049	13.4	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
Tropomyosin_1	PF12718.2	gi|408405828|ref|YP_006863811.1|	-	0.065	13.0	4.3	0.11	12.2	3.0	1.4	1	0	0	1	1	1	0	Tropomyosin	like
Rrf2	PF02082.15	gi|408405828|ref|YP_006863811.1|	-	0.067	13.3	0.1	1.7	8.7	0.1	2.4	2	0	0	2	2	2	0	Transcriptional	regulator
HTH_27	PF13463.1	gi|408405828|ref|YP_006863811.1|	-	0.081	13.2	0.0	0.26	11.6	0.0	1.9	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
DUF4396	PF14342.1	gi|408405829|ref|YP_006863812.1|	-	1.2e-24	87.0	6.0	1.4e-24	86.8	4.2	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4396)
DUF2269	PF10027.4	gi|408405829|ref|YP_006863812.1|	-	0.012	15.4	5.9	0.049	13.4	1.5	2.1	1	1	1	2	2	2	0	Predicted	integral	membrane	protein	(DUF2269)
DUF1049	PF06305.6	gi|408405829|ref|YP_006863812.1|	-	0.35	10.3	7.8	0.47	9.9	3.8	2.2	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1049)
DUF326	PF03860.11	gi|408405834|ref|YP_006863817.1|	-	7.8e-10	38.0	29.1	1.3e-05	24.7	9.1	2.1	2	0	0	2	2	2	2	Domain	of	Unknown	Function	(DUF326)
DUF457	PF04307.9	gi|408405835|ref|YP_006863818.1|	-	2e-07	30.4	7.9	3.1e-07	29.8	5.5	1.3	1	0	0	1	1	1	1	Predicted	membrane-bound	metal-dependent	hydrolase	(DUF457)
DUF4184	PF13803.1	gi|408405835|ref|YP_006863818.1|	-	4.2e-06	26.2	7.1	0.00011	21.5	4.9	2.5	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4184)
Zn_dep_PLPC	PF00882.13	gi|408405835|ref|YP_006863818.1|	-	7.5e-06	25.6	0.0	9.8e-06	25.3	0.0	1.3	1	0	0	1	1	1	1	Zinc	dependent	phospholipase	C
IncA	PF04156.9	gi|408405836|ref|YP_006863819.1|	-	0.19	11.2	0.6	0.35	10.4	0.0	1.6	2	0	0	2	2	2	0	IncA	protein
Proteasome	PF00227.21	gi|408405837|ref|YP_006863820.1|	-	9e-48	162.0	0.6	1.1e-47	161.7	0.4	1.0	1	0	0	1	1	1	1	Proteasome	subunit
Proteasome	PF00227.21	gi|408405838|ref|YP_006863821.1|	-	4.2e-40	137.0	0.0	5.1e-40	136.7	0.0	1.1	1	0	0	1	1	1	1	Proteasome	subunit
HxlR	PF01638.12	gi|408405839|ref|YP_006863822.1|	-	2.1e-26	91.3	0.9	2.7e-26	91.0	0.6	1.1	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
HTH_34	PF13601.1	gi|408405839|ref|YP_006863822.1|	-	0.00073	19.5	0.0	0.0011	18.9	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
PadR	PF03551.9	gi|408405839|ref|YP_006863822.1|	-	0.0075	16.0	0.0	0.013	15.3	0.0	1.5	1	1	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
MarR	PF01047.17	gi|408405839|ref|YP_006863822.1|	-	0.023	14.3	0.2	0.045	13.4	0.1	1.4	1	0	0	1	1	1	0	MarR	family
HTH_24	PF13412.1	gi|408405839|ref|YP_006863822.1|	-	0.047	13.0	0.7	0.23	10.8	0.5	2.0	1	1	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.2	gi|408405839|ref|YP_006863822.1|	-	0.049	13.4	0.1	0.096	12.4	0.1	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
MotA_ExbB	PF01618.11	gi|408405840|ref|YP_006863823.1|	-	0.1	12.2	0.1	0.13	11.8	0.0	1.1	1	0	0	1	1	1	0	MotA/TolQ/ExbB	proton	channel	family
Gram_pos_anchor	PF00746.16	gi|408405840|ref|YP_006863823.1|	-	8.9	6.2	6.0	0.85	9.4	0.7	1.9	2	0	0	2	2	2	0	Gram	positive	anchor
TFIIB	PF00382.14	gi|408405841|ref|YP_006863824.1|	-	1.6e-25	88.6	1.8	1.5e-12	47.1	0.2	2.2	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.7	gi|408405841|ref|YP_006863824.1|	-	6.5e-09	34.9	4.1	1.1e-08	34.2	2.8	1.3	1	0	0	1	1	1	1	TFIIB	zinc-binding
RRN7	PF11781.3	gi|408405841|ref|YP_006863824.1|	-	0.011	15.2	0.5	0.019	14.4	0.3	1.4	1	0	0	1	1	1	0	RNA	polymerase	I-specific	transcription	initiation	factor	Rrn7
OrfB_Zn_ribbon	PF07282.6	gi|408405841|ref|YP_006863824.1|	-	0.017	14.7	0.4	0.035	13.7	0.3	1.4	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
CHAD	PF05235.9	gi|408405841|ref|YP_006863824.1|	-	0.046	13.3	1.1	0.086	12.4	0.8	1.4	1	0	0	1	1	1	0	CHAD	domain
DUF2387	PF09526.5	gi|408405841|ref|YP_006863824.1|	-	0.047	13.6	0.2	0.14	12.0	0.1	1.8	2	0	0	2	2	2	0	Probable	metal-binding	protein	(DUF2387)
Zn_Tnp_IS1595	PF12760.2	gi|408405841|ref|YP_006863824.1|	-	0.075	12.8	0.1	0.14	11.9	0.1	1.5	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
Rubredoxin	PF00301.15	gi|408405841|ref|YP_006863824.1|	-	0.088	12.6	0.4	3.3	7.6	0.0	2.3	2	0	0	2	2	2	0	Rubredoxin
DZR	PF12773.2	gi|408405841|ref|YP_006863824.1|	-	0.093	12.5	0.2	0.18	11.6	0.1	1.5	1	0	0	1	1	1	0	Double	zinc	ribbon
zf-ribbon_3	PF13248.1	gi|408405841|ref|YP_006863824.1|	-	0.12	11.6	3.9	0.39	9.9	2.7	1.8	1	1	0	1	1	1	0	zinc-ribbon	domain
DNA_RNApol_7kD	PF03604.8	gi|408405841|ref|YP_006863824.1|	-	5	6.6	6.7	13	5.3	2.9	2.6	2	1	1	3	3	3	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
SieB	PF14163.1	gi|408405842|ref|YP_006863825.1|	-	0.12	11.9	1.3	0.13	11.8	0.8	1.2	1	1	0	1	1	1	0	Superinfection	exclusion	protein	B
CDC48_N	PF02359.13	gi|408405843|ref|YP_006863826.1|	-	4.2e-05	23.4	0.0	0.00016	21.5	0.0	1.8	2	0	0	2	2	2	1	Cell	division	protein	48	(CDC48),	N-terminal	domain
Inositol_P	PF00459.20	gi|408405844|ref|YP_006863827.1|	-	3.6e-29	101.9	0.0	4e-29	101.7	0.0	1.0	1	0	0	1	1	1	1	Inositol	monophosphatase	family
SAP	PF02037.22	gi|408405844|ref|YP_006863827.1|	-	0.062	12.8	0.0	2.7	7.5	0.0	2.4	2	0	0	2	2	2	0	SAP	domain
Pro_dh	PF01619.13	gi|408405845|ref|YP_006863828.1|	-	8.6e-42	143.2	0.4	1.7e-41	142.2	0.3	1.4	1	1	0	1	1	1	1	Proline	dehydrogenase
Aldedh	PF00171.17	gi|408405846|ref|YP_006863829.1|	-	4.2e-148	493.5	0.1	5.3e-148	493.1	0.0	1.0	1	0	0	1	1	1	1	Aldehyde	dehydrogenase	family
LuxC	PF05893.9	gi|408405846|ref|YP_006863829.1|	-	0.00013	20.8	0.1	0.0017	17.1	0.1	2.6	2	1	0	2	2	2	1	Acyl-CoA	reductase	(LuxC)
DUF1218	PF06749.7	gi|408405847|ref|YP_006863830.1|	-	0.01	16.2	0.9	0.011	16.2	0.6	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1218)
GRP	PF07172.6	gi|408405847|ref|YP_006863830.1|	-	0.016	15.6	0.0	0.017	15.5	0.0	1.1	1	0	0	1	1	1	0	Glycine	rich	protein	family
MpPF26	PF07666.6	gi|408405847|ref|YP_006863830.1|	-	0.04	13.8	2.0	0.046	13.6	1.4	1.0	1	0	0	1	1	1	0	M	penetrans	paralogue	family	26
7kD_coat	PF02495.12	gi|408405847|ref|YP_006863830.1|	-	0.04	13.3	6.9	0.21	11.0	4.8	1.9	1	1	0	1	1	1	0	7kD	viral	coat	protein
DUF4367	PF14285.1	gi|408405847|ref|YP_006863830.1|	-	0.052	12.8	0.6	0.053	12.8	0.4	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4367)
EI24	PF07264.6	gi|408405847|ref|YP_006863830.1|	-	0.057	12.8	0.6	0.059	12.8	0.4	1.0	1	0	0	1	1	1	0	Etoposide-induced	protein	2.4	(EI24)
DUF3529	PF12046.3	gi|408405847|ref|YP_006863830.1|	-	0.061	12.3	0.2	0.063	12.2	0.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3529)
DUF2254	PF10011.4	gi|408405847|ref|YP_006863830.1|	-	0.1	11.0	0.3	0.11	10.9	0.2	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2254)
Orbi_NS3	PF01616.11	gi|408405847|ref|YP_006863830.1|	-	0.14	11.0	0.5	0.15	11.0	0.3	1.0	1	0	0	1	1	1	0	Orbivirus	NS3
MacB_PCD	PF12704.2	gi|408405847|ref|YP_006863830.1|	-	0.14	11.6	0.8	0.16	11.5	0.5	1.0	1	0	0	1	1	1	0	MacB-like	periplasmic	core	domain
CarboxypepD_reg	PF13620.1	gi|408405848|ref|YP_006863831.1|	-	9.1e-47	157.0	20.9	6.1e-13	48.6	0.1	7.0	5	2	0	5	5	5	5	Carboxypeptidase	regulatory-like	domain
DUF4480	PF13715.1	gi|408405848|ref|YP_006863831.1|	-	1.2e-31	108.5	3.2	4.7e-08	32.9	0.0	6.4	5	1	1	6	6	6	5	Domain	of	unknown	function	(DUF4480)
phage_tail_N	PF08400.5	gi|408405848|ref|YP_006863831.1|	-	1.9e-11	43.8	2.5	0.038	13.7	0.0	4.9	2	2	2	4	4	4	3	Prophage	tail	fibre	N-terminal
fn3_3	PF14686.1	gi|408405848|ref|YP_006863831.1|	-	1.8e-09	37.6	0.0	0.99	9.5	0.0	4.8	4	0	0	4	4	4	3	Polysaccharide	lyase	family	4,	domain	II
Big_1	PF02369.11	gi|408405848|ref|YP_006863831.1|	-	1.8e-09	37.4	8.9	0.00018	21.3	0.5	5.2	3	3	1	4	4	4	2	Bacterial	Ig-like	domain	(group	1)
Dioxygenase_C	PF00775.16	gi|408405848|ref|YP_006863831.1|	-	1.4e-06	27.6	4.2	2	7.6	0.0	5.5	3	3	2	5	5	5	3	Dioxygenase
DUF4198	PF10670.4	gi|408405848|ref|YP_006863831.1|	-	1.9e-05	24.7	1.0	0.0012	18.9	0.1	2.9	3	0	0	3	3	3	1	Domain	of	unknown	function	(DUF4198)
Cna_B	PF05738.8	gi|408405848|ref|YP_006863831.1|	-	0.00025	20.7	1.3	0.22	11.3	0.0	4.0	3	1	1	4	4	4	1	Cna	protein	B-type	domain
DUF824	PF05688.6	gi|408405848|ref|YP_006863831.1|	-	0.0012	18.4	5.5	0.73	9.5	0.0	4.6	5	0	0	5	5	5	2	Salmonella	repeat	of	unknown	function	(DUF824)
Mfa2	PF08842.5	gi|408405848|ref|YP_006863831.1|	-	0.0016	17.8	0.0	0.0044	16.4	0.0	1.7	1	1	0	1	1	1	1	Fimbrillin-A	associated	anchor	proteins	Mfa1	and	Mfa2
Wzt_C	PF14524.1	gi|408405848|ref|YP_006863831.1|	-	0.018	14.7	0.1	49	3.5	0.0	4.0	4	1	0	4	4	4	0	Wzt	C-terminal	domain
PapC_N	PF13954.1	gi|408405848|ref|YP_006863831.1|	-	0.085	12.4	0.0	1	8.9	0.0	2.8	5	0	0	5	5	5	0	PapC	N-terminal	domain
Big_3_4	PF13754.1	gi|408405848|ref|YP_006863831.1|	-	0.093	13.0	11.5	15	5.9	0.1	5.4	5	0	0	5	5	5	0	Bacterial	Ig-like	domain	(group	3)
AAA_10	PF12846.2	gi|408405849|ref|YP_006863832.1|	-	1.5e-21	77.1	0.0	6.8e-21	75.0	0.0	1.9	1	1	0	1	1	1	1	AAA-like	domain
DUF87	PF01935.12	gi|408405849|ref|YP_006863832.1|	-	5.1e-13	49.3	0.1	5.1e-13	49.3	0.1	2.8	2	1	0	2	2	1	1	Domain	of	unknown	function	DUF87
DUF853	PF05872.7	gi|408405849|ref|YP_006863832.1|	-	1.1e-07	30.5	0.0	1.1e-07	30.5	0.0	2.9	3	0	0	3	3	3	1	Bacterial	protein	of	unknown	function	(DUF853)
FtsK_SpoIIIE	PF01580.13	gi|408405849|ref|YP_006863832.1|	-	1.8e-05	24.3	1.5	5.5e-05	22.7	0.0	2.3	2	1	1	3	3	3	1	FtsK/SpoIIIE	family
TrwB_AAD_bind	PF10412.4	gi|408405849|ref|YP_006863832.1|	-	0.0006	18.5	0.2	0.0019	16.8	0.0	1.9	2	0	0	2	2	2	1	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
AAA_13	PF13166.1	gi|408405849|ref|YP_006863832.1|	-	0.0024	16.4	15.1	0.33	9.3	10.3	2.2	2	0	0	2	2	2	2	AAA	domain
T2SE	PF00437.15	gi|408405849|ref|YP_006863832.1|	-	0.029	13.2	0.1	0.059	12.2	0.1	1.4	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
ResIII	PF04851.10	gi|408405849|ref|YP_006863832.1|	-	0.14	11.9	0.0	0.14	11.9	0.0	2.8	2	1	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
WTX	PF09422.5	gi|408405849|ref|YP_006863832.1|	-	0.21	10.5	4.6	0.32	9.9	3.2	1.1	1	0	0	1	1	1	0	WTX	protein
ABC_tran	PF00005.22	gi|408405849|ref|YP_006863832.1|	-	0.33	11.2	0.0	0.33	11.2	0.0	2.5	2	1	0	2	2	1	0	ABC	transporter
Baculo_PEP_C	PF04513.7	gi|408405849|ref|YP_006863832.1|	-	0.52	10.1	2.3	7.5	6.3	0.1	2.4	2	0	0	2	2	2	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
IncA	PF04156.9	gi|408405849|ref|YP_006863832.1|	-	1.2	8.7	11.6	2.9	7.4	8.0	1.7	1	0	0	1	1	1	0	IncA	protein
Peptidase_S46	PF10459.4	gi|408405849|ref|YP_006863832.1|	-	1.3	7.3	7.4	1.9	6.7	5.1	1.2	1	0	0	1	1	1	0	Peptidase	S46
ATG16	PF08614.6	gi|408405849|ref|YP_006863832.1|	-	3.6	7.3	21.1	0.14	11.9	6.7	2.2	1	1	1	2	2	2	0	Autophagy	protein	16	(ATG16)
APG6	PF04111.7	gi|408405849|ref|YP_006863832.1|	-	4.5	6.2	15.4	1	8.3	8.1	1.7	1	1	0	1	1	1	0	Autophagy	protein	Apg6
V_ATPase_I	PF01496.14	gi|408405849|ref|YP_006863832.1|	-	6.2	4.5	8.0	9	4.0	5.5	1.2	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
NPV_P10	PF05531.7	gi|408405849|ref|YP_006863832.1|	-	6.4	7.1	7.5	51	4.2	4.0	2.6	2	1	1	3	3	2	0	Nucleopolyhedrovirus	P10	protein
Spectrin	PF00435.16	gi|408405850|ref|YP_006863833.1|	-	0.041	14.1	1.1	0.051	13.8	0.8	1.1	1	0	0	1	1	1	0	Spectrin	repeat
HLH	PF00010.21	gi|408405850|ref|YP_006863833.1|	-	0.079	12.6	0.1	0.11	12.2	0.1	1.2	1	0	0	1	1	1	0	Helix-loop-helix	DNA-binding	domain
RibD_C	PF01872.12	gi|408405851|ref|YP_006863834.1|	-	5.4e-52	176.3	2.1	6.1e-52	176.1	1.4	1.0	1	0	0	1	1	1	1	RibD	C-terminal	domain
Amidohydro_1	PF01979.15	gi|408405852|ref|YP_006863835.1|	-	6.5e-27	95.0	0.9	2.2e-26	93.3	0.6	1.7	1	1	0	1	1	1	1	Amidohydrolase	family
Amidohydro_4	PF13147.1	gi|408405852|ref|YP_006863835.1|	-	1.5e-10	41.6	1.5	6.7e-10	39.4	1.0	2.1	1	1	0	1	1	1	1	Amidohydrolase
Amidohydro_5	PF13594.1	gi|408405852|ref|YP_006863835.1|	-	1.6e-09	37.3	0.1	3.7e-09	36.2	0.0	1.7	1	0	0	1	1	1	1	Amidohydrolase
Amidohydro_3	PF07969.6	gi|408405852|ref|YP_006863835.1|	-	5.2e-07	29.2	4.3	0.00012	21.4	0.2	2.5	1	1	1	2	2	2	2	Amidohydrolase	family
DUF2064	PF09837.4	gi|408405852|ref|YP_006863835.1|	-	0.087	12.4	0.0	0.18	11.4	0.0	1.5	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2064)
GGDN	PF05165.7	gi|408405853|ref|YP_006863836.1|	-	4.1e-60	202.8	0.7	5e-60	202.6	0.5	1.0	1	0	0	1	1	1	1	GGDN	family
Guanylate_cyc	PF00211.15	gi|408405853|ref|YP_006863836.1|	-	0.0034	16.7	0.1	0.0079	15.5	0.1	1.6	1	0	0	1	1	1	1	Adenylate	and	Guanylate	cyclase	catalytic	domain
GGDEF	PF00990.16	gi|408405853|ref|YP_006863836.1|	-	0.03	13.8	0.1	0.066	12.7	0.0	1.6	1	1	0	1	1	1	0	GGDEF	domain
DMRL_synthase	PF00885.14	gi|408405854|ref|YP_006863837.1|	-	2.1e-35	121.4	0.2	2.6e-35	121.2	0.1	1.0	1	0	0	1	1	1	1	6,7-dimethyl-8-ribityllumazine	synthase
DHBP_synthase	PF00926.14	gi|408405855|ref|YP_006863838.1|	-	6.6e-63	211.4	0.3	7.5e-63	211.2	0.2	1.0	1	0	0	1	1	1	1	3,4-dihydroxy-2-butanone	4-phosphate	synthase
EF-hand_7	PF13499.1	gi|408405855|ref|YP_006863838.1|	-	0.1	12.7	0.2	0.73	10.0	0.0	2.1	2	0	0	2	2	2	0	EF-hand	domain	pair
Lum_binding	PF00677.12	gi|408405857|ref|YP_006863840.1|	-	4.4e-46	154.6	0.4	3e-23	81.5	0.0	2.0	2	0	0	2	2	2	2	Lumazine	binding	domain
Hist_deacetyl	PF00850.14	gi|408405858|ref|YP_006863841.1|	-	6.7e-72	242.3	0.0	8e-72	242.1	0.0	1.0	1	0	0	1	1	1	1	Histone	deacetylase	domain
MFS_1	PF07690.11	gi|408405859|ref|YP_006863842.1|	-	2.6e-22	79.0	45.7	3.7e-16	58.7	22.8	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_1_like	PF12832.2	gi|408405859|ref|YP_006863842.1|	-	0.064	13.0	21.4	0.097	12.4	0.9	4.9	4	2	2	6	6	6	0	MFS_1	like	family
DUF1435	PF07256.7	gi|408405859|ref|YP_006863842.1|	-	2.9	7.9	8.4	0.15	12.0	0.6	2.8	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF1435)
Abhydrolase_1	PF00561.15	gi|408405861|ref|YP_006863844.1|	-	1.4e-08	34.5	0.3	4e-08	33.1	0.2	1.9	1	1	0	1	1	1	1	alpha/beta	hydrolase	fold
Abhydrolase_6	PF12697.2	gi|408405861|ref|YP_006863844.1|	-	2.7e-08	33.9	0.0	5.2e-08	33.0	0.0	1.4	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_5	PF12695.2	gi|408405861|ref|YP_006863844.1|	-	8.2e-07	28.8	0.1	2.4e-05	24.1	0.1	2.2	1	1	0	1	1	1	1	Alpha/beta	hydrolase	family
PhaC_N	PF07167.8	gi|408405861|ref|YP_006863844.1|	-	3e-06	26.7	0.2	5.9e-06	25.8	0.2	1.4	1	0	0	1	1	1	1	Poly-beta-hydroxybutyrate	polymerase	(PhaC)	N-terminus
FSH1	PF03959.8	gi|408405861|ref|YP_006863844.1|	-	0.00034	20.1	0.0	0.31	10.4	0.0	2.4	2	0	0	2	2	2	2	Serine	hydrolase	(FSH1)
PHB_depo_C	PF06850.6	gi|408405861|ref|YP_006863844.1|	-	0.0038	16.4	0.0	0.0061	15.7	0.0	1.3	1	0	0	1	1	1	1	PHB	de-polymerase	C-terminus
Peptidase_S76	PF13611.1	gi|408405861|ref|YP_006863844.1|	-	0.07	13.2	0.0	0.15	12.1	0.0	1.5	1	0	0	1	1	1	0	Serine	peptidase	of	plant	viral	polyprotein,	P1
Rad50_zn_hook	PF04423.9	gi|408405862|ref|YP_006863845.1|	-	0.00028	20.2	0.1	0.00031	20.1	0.0	1.1	1	0	0	1	1	1	1	Rad50	zinc	hook	motif
zf-C2H2_4	PF13894.1	gi|408405862|ref|YP_006863845.1|	-	0.0013	18.8	0.6	0.0022	18.2	0.4	1.3	1	0	0	1	1	1	1	C2H2-type	zinc	finger
zf-C2H2	PF00096.21	gi|408405862|ref|YP_006863845.1|	-	0.019	15.3	1.0	0.029	14.6	0.7	1.3	1	0	0	1	1	1	0	Zinc	finger,	C2H2	type
Prok-RING_4	PF14447.1	gi|408405862|ref|YP_006863845.1|	-	0.036	13.6	0.1	0.047	13.2	0.1	1.2	1	0	0	1	1	1	0	Prokaryotic	RING	finger	family	4
zf-C2HC_2	PF13913.1	gi|408405862|ref|YP_006863845.1|	-	0.045	13.4	1.8	0.081	12.6	1.3	1.4	1	0	0	1	1	1	0	zinc-finger	of	a	C2HC-type
zf-C2H2_6	PF13912.1	gi|408405862|ref|YP_006863845.1|	-	0.054	13.4	1.1	0.098	12.5	0.8	1.6	1	1	0	1	1	1	0	C2H2-type	zinc	finger
zf-C3HC4_3	PF13920.1	gi|408405862|ref|YP_006863845.1|	-	0.088	12.4	0.0	0.1	12.2	0.0	1.1	1	0	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
zf-C2H2_jaz	PF12171.3	gi|408405862|ref|YP_006863845.1|	-	0.1	12.7	0.1	0.16	12.1	0.1	1.3	1	0	0	1	1	1	0	Zinc-finger	double-stranded	RNA-binding
Ribosomal_L36e	PF01158.13	gi|408405862|ref|YP_006863845.1|	-	0.12	12.3	0.0	0.12	12.2	0.0	1.0	1	0	0	1	1	1	0	Ribosomal	protein	L36e
zf-H2C2_2	PF13465.1	gi|408405862|ref|YP_006863845.1|	-	0.18	12.1	0.0	0.18	12.1	0.0	1.6	2	0	0	2	2	2	0	Zinc-finger	double	domain
Glyco_tranf_2_3	PF13641.1	gi|408405863|ref|YP_006863846.1|	-	2.1e-29	102.9	0.0	2.8e-29	102.5	0.0	1.1	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glycos_transf_2	PF00535.21	gi|408405863|ref|YP_006863846.1|	-	2.5e-21	76.0	0.2	4e-21	75.4	0.2	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_trans_2_3	PF13632.1	gi|408405863|ref|YP_006863846.1|	-	5.4e-11	42.5	0.0	8e-11	42.0	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	group	2
Glyco_tranf_2_4	PF13704.1	gi|408405863|ref|YP_006863846.1|	-	3.2e-05	24.1	0.0	5.6e-05	23.3	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_2	PF10111.4	gi|408405863|ref|YP_006863846.1|	-	0.00026	20.1	0.1	0.00051	19.2	0.1	1.5	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_transf_21	PF13506.1	gi|408405863|ref|YP_006863846.1|	-	0.0023	17.2	0.0	0.016	14.5	0.0	2.2	1	1	0	1	1	1	1	Glycosyl	transferase	family	21
RRM_4	PF10598.4	gi|408405863|ref|YP_006863846.1|	-	0.0047	16.7	0.1	0.95	9.3	0.0	3.1	1	1	3	4	4	4	1	RNA	recognition	motif	of	the	spliceosomal	PrP8
HATPase_c	PF02518.21	gi|408405864|ref|YP_006863847.1|	-	2.6e-28	97.9	0.2	4.9e-28	97.0	0.1	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.20	gi|408405864|ref|YP_006863847.1|	-	6.5e-11	42.0	7.9	6.1e-10	38.9	0.2	3.7	3	0	0	3	3	3	1	His	Kinase	A	(phospho-acceptor)	domain
Cache_3	PF14827.1	gi|408405864|ref|YP_006863847.1|	-	7e-06	25.9	0.8	0.087	12.7	0.0	3.5	2	2	0	2	2	2	2	Sensory	domain	of	two-component	sensor	kinase
HATPase_c_2	PF13581.1	gi|408405864|ref|YP_006863847.1|	-	4e-05	23.3	0.0	9.8e-05	22.1	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
HATPase_c_5	PF14501.1	gi|408405864|ref|YP_006863847.1|	-	0.00042	19.9	1.0	0.001	18.7	0.0	2.2	3	0	0	3	3	3	1	GHKL	domain
HATPase_c_3	PF13589.1	gi|408405864|ref|YP_006863847.1|	-	0.00075	19.1	0.0	0.0016	18.1	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
DUF3186	PF11382.3	gi|408405864|ref|YP_006863847.1|	-	0.0022	17.1	1.0	0.0052	15.9	0.7	1.6	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3186)
RskA	PF10099.4	gi|408405864|ref|YP_006863847.1|	-	0.011	15.5	1.1	0.84	9.3	0.0	2.3	2	0	0	2	2	2	0	Anti-sigma-K	factor	rskA
Claudin_2	PF13903.1	gi|408405864|ref|YP_006863847.1|	-	0.028	14.1	1.7	3.1	7.4	0.0	2.3	2	0	0	2	2	2	0	PMP-22/EMP/MP20/Claudin	tight	junction
Cache_2	PF08269.6	gi|408405864|ref|YP_006863847.1|	-	0.045	13.7	6.7	0.85	9.6	0.0	3.3	3	0	0	3	3	3	0	Cache	domain
PTS_IIA	PF02255.11	gi|408405864|ref|YP_006863847.1|	-	0.049	13.4	0.3	0.16	11.8	0.2	1.8	1	0	0	1	1	1	0	PTS	system,	Lactose/Cellobiose	specific	IIA	subunit
DUF948	PF06103.6	gi|408405864|ref|YP_006863847.1|	-	0.69	9.8	5.9	1.4	8.7	0.1	3.4	4	0	0	4	4	4	0	Bacterial	protein	of	unknown	function	(DUF948)
TipAS	PF07739.8	gi|408405864|ref|YP_006863847.1|	-	1.1	9.6	4.0	3.4	8.0	0.1	3.2	3	1	0	3	3	3	0	TipAS	antibiotic-recognition	domain
GvpG	PF05120.7	gi|408405864|ref|YP_006863847.1|	-	6	6.7	6.9	1.2	8.9	0.5	2.6	2	1	0	2	2	2	0	Gas	vesicle	protein	G
DnaJ	PF00226.26	gi|408405866|ref|YP_006863849.1|	-	1.5e-24	85.5	1.6	2.6e-24	84.7	1.1	1.4	1	0	0	1	1	1	1	DnaJ	domain
DZR	PF12773.2	gi|408405866|ref|YP_006863849.1|	-	0.00043	20.0	6.7	0.0013	18.5	4.6	1.8	1	1	0	1	1	1	1	Double	zinc	ribbon
Rubredoxin	PF00301.15	gi|408405866|ref|YP_006863849.1|	-	0.0024	17.7	1.8	0.0024	17.7	1.2	2.5	3	1	0	3	3	2	1	Rubredoxin
Zn_ribbon_recom	PF13408.1	gi|408405866|ref|YP_006863849.1|	-	0.014	15.6	0.7	7.2	6.9	0.0	2.6	2	0	0	2	2	2	0	Recombinase	zinc	beta	ribbon	domain
TF_Zn_Ribbon	PF08271.7	gi|408405866|ref|YP_006863849.1|	-	0.019	14.2	9.3	0.69	9.2	1.6	2.6	2	0	0	2	2	2	0	TFIIB	zinc-binding
DUF3374	PF11854.3	gi|408405866|ref|YP_006863849.1|	-	0.05	11.8	0.0	0.06	11.6	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3374)
zf-CHY	PF05495.7	gi|408405866|ref|YP_006863849.1|	-	0.05	13.7	5.9	0.094	12.8	4.1	1.5	1	0	0	1	1	1	0	CHY	zinc	finger
Glyco_transf_29	PF00777.13	gi|408405866|ref|YP_006863849.1|	-	0.069	12.2	0.0	0.11	11.6	0.0	1.3	1	0	0	1	1	1	0	Glycosyltransferase	family	29	(sialyltransferase)
DUF1364	PF07102.7	gi|408405866|ref|YP_006863849.1|	-	0.091	12.6	0.1	0.18	11.7	0.1	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1364)
PhnA_Zn_Ribbon	PF08274.7	gi|408405866|ref|YP_006863849.1|	-	0.12	12.2	10.0	1.3	8.8	0.8	3.0	2	1	0	2	2	2	0	PhnA	Zinc-Ribbon
zf-FCS	PF06467.9	gi|408405866|ref|YP_006863849.1|	-	0.12	12.0	6.0	2.8	7.6	0.1	3.3	2	1	1	3	3	3	0	MYM-type	Zinc	finger	with	FCS	sequence	motif
OrfB_Zn_ribbon	PF07282.6	gi|408405866|ref|YP_006863849.1|	-	0.23	11.1	6.2	4.4	7.0	0.7	2.6	2	0	0	2	2	2	0	Putative	transposase	DNA-binding	domain
zinc_ribbon_5	PF13719.1	gi|408405866|ref|YP_006863849.1|	-	0.29	10.7	9.9	3.5	7.2	0.5	3.9	4	0	0	4	4	4	0	zinc-ribbon	domain
zinc_ribbon_4	PF13717.1	gi|408405866|ref|YP_006863849.1|	-	0.33	10.6	9.7	4.4	7.0	0.5	4.0	4	0	0	4	4	4	0	zinc-ribbon	domain
zf-AN1	PF01428.11	gi|408405866|ref|YP_006863849.1|	-	0.85	9.5	10.1	4	7.3	0.8	2.4	2	0	0	2	2	2	0	AN1-like	Zinc	finger
RRN7	PF11781.3	gi|408405866|ref|YP_006863849.1|	-	1.1	8.8	12.6	2.9	7.4	0.1	3.8	2	2	2	4	4	4	0	RNA	polymerase	I-specific	transcription	initiation	factor	Rrn7
zf-UBP	PF02148.14	gi|408405866|ref|YP_006863849.1|	-	2	8.6	8.8	0.35	11.0	0.6	2.2	2	0	0	2	2	2	0	Zn-finger	in	ubiquitin-hydrolases	and	other	protein
C1_3	PF07649.7	gi|408405866|ref|YP_006863849.1|	-	3.9	7.6	7.3	36	4.4	0.0	3.7	4	0	0	4	4	4	0	C1-like	domain
C1_4	PF07975.7	gi|408405866|ref|YP_006863849.1|	-	4.8	7.2	8.4	17	5.4	0.1	3.3	2	2	1	3	3	3	0	TFIIH	C1-like	domain
Spt4	PF06093.8	gi|408405866|ref|YP_006863849.1|	-	6.7	6.6	6.7	4.4	7.2	0.7	2.3	2	0	0	2	2	2	0	Spt4/RpoE2	zinc	finger
Abhydrolase_6	PF12697.2	gi|408405867|ref|YP_006863850.1|	-	4.4e-42	144.5	0.1	5.5e-42	144.2	0.1	1.1	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_1	PF00561.15	gi|408405867|ref|YP_006863850.1|	-	3.2e-24	85.7	0.0	4.9e-22	78.6	0.0	2.1	1	1	0	1	1	1	1	alpha/beta	hydrolase	fold
Abhydrolase_5	PF12695.2	gi|408405867|ref|YP_006863850.1|	-	4.6e-23	81.5	0.0	1.2e-22	80.2	0.0	1.6	1	1	0	1	1	1	1	Alpha/beta	hydrolase	family
DUF676	PF05057.9	gi|408405867|ref|YP_006863850.1|	-	3.6e-07	29.7	0.0	5.4e-07	29.1	0.0	1.2	1	0	0	1	1	1	1	Putative	serine	esterase	(DUF676)
Hydrolase_4	PF12146.3	gi|408405867|ref|YP_006863850.1|	-	1.7e-06	27.7	0.0	3.6e-06	26.7	0.0	1.5	1	0	0	1	1	1	1	Putative	lysophospholipase
Thioesterase	PF00975.15	gi|408405867|ref|YP_006863850.1|	-	4e-05	23.9	0.0	5.6e-05	23.4	0.0	1.3	1	0	0	1	1	1	1	Thioesterase	domain
Abhydrolase_2	PF02230.11	gi|408405867|ref|YP_006863850.1|	-	4.3e-05	23.0	0.1	0.13	11.7	0.0	3.5	3	1	1	4	4	4	1	Phospholipase/Carboxylesterase
UPF0227	PF05728.7	gi|408405867|ref|YP_006863850.1|	-	0.0004	20.1	0.0	0.001	18.8	0.0	1.9	1	1	0	1	1	1	1	Uncharacterised	protein	family	(UPF0227)
FSH1	PF03959.8	gi|408405867|ref|YP_006863850.1|	-	0.00081	18.8	0.0	0.022	14.2	0.0	2.6	2	1	0	2	2	2	1	Serine	hydrolase	(FSH1)
Abhydrolase_4	PF08386.5	gi|408405867|ref|YP_006863850.1|	-	0.0019	18.0	0.0	0.0043	16.9	0.0	1.5	1	0	0	1	1	1	1	TAP-like	protein
DUF2305	PF10230.4	gi|408405867|ref|YP_006863850.1|	-	0.0026	17.2	0.0	0.0041	16.5	0.0	1.3	1	0	0	1	1	1	1	Uncharacterised	conserved	protein	(DUF2305)
PGAP1	PF07819.8	gi|408405867|ref|YP_006863850.1|	-	0.0038	16.8	0.1	0.03	13.9	0.1	2.1	1	1	0	1	1	1	1	PGAP1-like	protein
BAAT_C	PF08840.6	gi|408405867|ref|YP_006863850.1|	-	0.007	16.0	0.0	0.013	15.1	0.0	1.4	1	1	0	1	1	1	1	BAAT	/	Acyl-CoA	thioester	hydrolase	C	terminal
DLH	PF01738.13	gi|408405867|ref|YP_006863850.1|	-	0.0074	15.5	0.0	3.5	6.8	0.0	2.7	2	1	1	3	3	3	1	Dienelactone	hydrolase	family
Ser_hydrolase	PF06821.8	gi|408405867|ref|YP_006863850.1|	-	0.014	15.0	0.0	1.2	8.7	0.0	2.3	2	0	0	2	2	2	0	Serine	hydrolase
Abhydro_lipase	PF04083.11	gi|408405867|ref|YP_006863850.1|	-	0.014	14.7	0.0	0.032	13.5	0.0	1.5	1	0	0	1	1	1	0	Partial	alpha/beta-hydrolase	lipase	region
Ndr	PF03096.9	gi|408405867|ref|YP_006863850.1|	-	0.017	13.6	0.0	0.93	7.9	0.0	2.8	1	1	2	3	3	3	0	Ndr	family
Peptidase_S9	PF00326.16	gi|408405867|ref|YP_006863850.1|	-	0.044	13.0	0.0	1.1	8.3	0.0	2.3	2	0	0	2	2	2	0	Prolyl	oligopeptidase	family
DUF1057	PF06342.7	gi|408405867|ref|YP_006863850.1|	-	0.069	11.9	0.0	0.11	11.3	0.0	1.4	1	1	0	1	1	1	0	Alpha/beta	hydrolase	of	unknown	function	(DUF1057)
VPS11_C	PF12451.3	gi|408405867|ref|YP_006863850.1|	-	0.11	12.3	0.5	4.2	7.3	0.2	2.5	2	0	0	2	2	2	0	Vacuolar	protein	sorting	protein	11	C	terminal
DUF2974	PF11187.3	gi|408405867|ref|YP_006863850.1|	-	0.16	11.2	0.0	0.24	10.7	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2974)
SHMT	PF00464.14	gi|408405868|ref|YP_006863851.1|	-	1.8e-74	250.4	0.1	2.7e-74	249.9	0.0	1.2	1	0	0	1	1	1	1	Serine	hydroxymethyltransferase
Beta_elim_lyase	PF01212.16	gi|408405868|ref|YP_006863851.1|	-	9.5e-09	34.7	0.2	1.5e-08	34.1	0.1	1.2	1	0	0	1	1	1	1	Beta-eliminating	lyase
Aminotran_5	PF00266.14	gi|408405868|ref|YP_006863851.1|	-	8.7e-08	31.2	0.4	3.1e-06	26.1	0.3	2.4	1	1	0	1	1	1	1	Aminotransferase	class-V
Aminotran_1_2	PF00155.16	gi|408405868|ref|YP_006863851.1|	-	3.2e-06	26.3	0.0	8.8e-06	24.9	0.0	1.6	1	1	0	1	1	1	1	Aminotransferase	class	I	and	II
SelA	PF03841.8	gi|408405868|ref|YP_006863851.1|	-	0.00046	19.0	0.0	0.00092	18.0	0.0	1.4	1	0	0	1	1	1	1	L-seryl-tRNA	selenium	transferase
Peptidase_M32	PF02074.10	gi|408405869|ref|YP_006863852.1|	-	4.4e-164	546.7	4.7	5.4e-164	546.4	3.3	1.0	1	0	0	1	1	1	1	Carboxypeptidase	Taq	(M32)	metallopeptidase
TrmB	PF01978.14	gi|408405869|ref|YP_006863852.1|	-	0.0014	18.3	0.0	0.0061	16.2	0.0	2.1	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
ThylakoidFormat	PF11264.3	gi|408405869|ref|YP_006863852.1|	-	0.044	13.3	0.3	4.6	6.7	0.3	2.5	2	0	0	2	2	2	0	Thylakoid	formation	protein
RPW8	PF05659.6	gi|408405869|ref|YP_006863852.1|	-	0.058	12.9	2.4	0.38	10.2	0.7	2.3	2	0	0	2	2	2	0	Arabidopsis	broad-spectrum	mildew	resistance	protein	RPW8
Sec15	PF04091.7	gi|408405870|ref|YP_006863853.1|	-	0.1	11.9	0.0	0.12	11.7	0.0	1.1	1	0	0	1	1	1	0	Exocyst	complex	subunit	Sec15-like
MarR	PF01047.17	gi|408405871|ref|YP_006863854.1|	-	0.00084	18.9	0.1	0.0018	17.9	0.0	1.6	2	0	0	2	2	2	1	MarR	family
HTH_Crp_2	PF13545.1	gi|408405871|ref|YP_006863854.1|	-	0.0018	18.0	0.1	0.01	15.6	0.0	2.0	2	0	0	2	2	2	1	Crp-like	helix-turn-helix	domain
HTH_20	PF12840.2	gi|408405871|ref|YP_006863854.1|	-	0.0062	16.3	0.0	0.011	15.5	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
TrmB	PF01978.14	gi|408405871|ref|YP_006863854.1|	-	0.011	15.4	0.0	0.02	14.6	0.0	1.5	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
DUF1803	PF08820.5	gi|408405871|ref|YP_006863854.1|	-	0.034	13.8	0.0	0.063	12.9	0.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1803)
FeoC	PF09012.5	gi|408405871|ref|YP_006863854.1|	-	0.064	12.9	0.1	6.1	6.6	0.0	2.3	2	0	0	2	2	2	0	FeoC	like	transcriptional	regulator
MarR_2	PF12802.2	gi|408405871|ref|YP_006863854.1|	-	0.09	12.4	0.0	0.19	11.4	0.0	1.5	1	0	0	1	1	1	0	MarR	family
DUF4423	PF14394.1	gi|408405871|ref|YP_006863854.1|	-	0.096	12.2	0.6	0.27	10.7	0.0	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4423)
Ets	PF00178.17	gi|408405871|ref|YP_006863854.1|	-	0.11	12.6	0.2	0.29	11.3	0.0	1.7	2	0	0	2	2	2	0	Ets-domain
HTH_11	PF08279.7	gi|408405871|ref|YP_006863854.1|	-	0.12	12.0	0.6	0.21	11.2	0.1	1.8	2	0	0	2	2	2	0	HTH	domain
HTH_24	PF13412.1	gi|408405871|ref|YP_006863854.1|	-	0.8	9.1	5.4	3.1	7.2	0.0	2.6	3	0	0	3	3	3	0	Winged	helix-turn-helix	DNA-binding
Trypsin_2	PF13365.1	gi|408405872|ref|YP_006863855.1|	-	3.9e-21	75.2	0.2	8.8e-21	74.1	0.1	1.6	2	0	0	2	2	2	1	Trypsin-like	peptidase	domain
PDZ_2	PF13180.1	gi|408405872|ref|YP_006863855.1|	-	8.9e-16	57.5	0.1	2.2e-15	56.3	0.1	1.7	1	0	0	1	1	1	1	PDZ	domain
Trypsin	PF00089.21	gi|408405872|ref|YP_006863855.1|	-	8.7e-11	41.8	0.2	1.4e-10	41.1	0.1	1.3	1	0	0	1	1	1	1	Trypsin
PDZ	PF00595.19	gi|408405872|ref|YP_006863855.1|	-	1.7e-07	31.3	0.9	2.7e-07	30.6	0.1	1.8	2	0	0	2	2	2	1	PDZ	domain	(Also	known	as	DHR	or	GLGF)
GRASP55_65	PF04495.9	gi|408405872|ref|YP_006863855.1|	-	0.00035	20.5	0.0	0.00088	19.2	0.0	1.7	1	0	0	1	1	1	1	GRASP55/65	PDZ-like	domain
Tricorn_PDZ	PF14685.1	gi|408405872|ref|YP_006863855.1|	-	0.00081	19.1	0.2	0.0023	17.6	0.1	1.9	1	0	0	1	1	1	1	Tricorn	protease	PDZ	domain
Peptidase_S46	PF10459.4	gi|408405872|ref|YP_006863855.1|	-	0.011	14.1	0.7	2	6.7	0.1	2.1	2	0	0	2	2	2	0	Peptidase	S46
Antitoxin-MazE	PF04014.13	gi|408405872|ref|YP_006863855.1|	-	0.013	15.2	0.0	0.057	13.1	0.0	2.1	2	0	0	2	2	2	0	Antidote-toxin	recognition	MazE
HemolysinCabind	PF00353.14	gi|408405873|ref|YP_006863856.1|	-	1.9e-09	37.0	60.9	0.0042	17.3	1.5	10.0	6	1	7	13	13	13	12	Hemolysin-type	calcium-binding	repeat	(2	copies)
Asparaginase_2	PF01112.13	gi|408405874|ref|YP_006863857.1|	-	1.4e-24	86.4	0.7	1.5e-24	86.2	0.5	1.0	1	0	0	1	1	1	1	Asparaginase
MFS_2	PF13347.1	gi|408405875|ref|YP_006863858.1|	-	0.0012	17.3	3.2	0.0012	17.3	2.2	2.0	2	0	0	2	2	2	1	MFS/sugar	transport	protein
OATP	PF03137.15	gi|408405875|ref|YP_006863858.1|	-	0.0013	16.8	0.7	0.0041	15.2	0.0	1.9	1	1	1	2	2	2	1	Organic	Anion	Transporter	Polypeptide	(OATP)	family
FA_desaturase	PF00487.19	gi|408405875|ref|YP_006863858.1|	-	0.4	10.0	3.7	11	5.3	0.0	2.6	2	1	1	3	3	3	0	Fatty	acid	desaturase
DUF2628	PF10947.3	gi|408405875|ref|YP_006863858.1|	-	0.69	9.7	0.0	0.69	9.7	0.0	2.9	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2628)
MFS_1	PF07690.11	gi|408405876|ref|YP_006863859.1|	-	2.9e-16	59.1	20.3	3.5e-16	58.8	14.0	1.0	1	0	0	1	1	1	1	Major	Facilitator	Superfamily
Sugar_tr	PF00083.19	gi|408405876|ref|YP_006863859.1|	-	0.00022	19.9	8.2	0.00024	19.7	5.7	1.1	1	0	0	1	1	1	1	Sugar	(and	other)	transporter
DUF2243	PF10002.4	gi|408405876|ref|YP_006863859.1|	-	0.0018	18.0	1.0	0.0032	17.2	0.1	1.7	2	0	0	2	2	2	1	Predicted	membrane	protein	(DUF2243)
DUF3754	PF12576.3	gi|408405876|ref|YP_006863859.1|	-	0.12	11.9	1.8	0.15	11.6	1.3	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3754)
DUF3021	PF11457.3	gi|408405876|ref|YP_006863859.1|	-	6.8	6.5	9.1	0.87	9.4	2.6	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3021)
Sulfotransfer_3	PF13469.1	gi|408405877|ref|YP_006863860.1|	-	8e-15	56.1	0.1	9.9e-15	55.7	0.1	1.1	1	0	0	1	1	1	1	Sulfotransferase	family
Sulfotransfer_1	PF00685.22	gi|408405877|ref|YP_006863860.1|	-	3e-14	52.9	0.1	7.8e-14	51.5	0.1	1.7	1	1	0	1	1	1	1	Sulfotransferase	domain
AAA_17	PF13207.1	gi|408405877|ref|YP_006863860.1|	-	0.0061	17.3	0.2	0.049	14.4	0.0	2.2	2	1	0	2	2	2	1	AAA	domain
Metallophos_2	PF12850.2	gi|408405878|ref|YP_006863861.1|	-	6.1e-27	94.3	0.2	7.2e-27	94.1	0.1	1.1	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.23	gi|408405878|ref|YP_006863861.1|	-	9.3e-09	34.9	1.2	5.8e-07	29.1	0.8	2.7	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_3	PF14582.1	gi|408405878|ref|YP_006863861.1|	-	5.5e-06	25.7	0.2	0.04	13.0	0.1	2.1	2	0	0	2	2	2	2	Metallophosphoesterase,	calcineurin	superfamily
Transposase_22	PF02994.9	gi|408405878|ref|YP_006863861.1|	-	0.15	10.5	0.1	0.16	10.4	0.1	1.1	1	0	0	1	1	1	0	L1	transposable	element
DUF3263	PF11662.3	gi|408405881|ref|YP_006863864.1|	-	0.019	14.3	0.0	0.053	12.9	0.0	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3263)
TrmB	PF01978.14	gi|408405881|ref|YP_006863864.1|	-	0.051	13.2	0.0	0.12	12.0	0.0	1.6	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_45	PF14947.1	gi|408405881|ref|YP_006863864.1|	-	0.051	13.3	0.5	0.12	12.1	0.3	1.7	1	1	0	1	1	1	0	Winged	helix-turn-helix
PLDc_2	PF13091.1	gi|408405881|ref|YP_006863864.1|	-	0.051	13.3	0.9	0.084	12.6	0.2	1.9	2	1	0	2	2	2	0	PLD-like	domain
TFIIE_alpha	PF02002.12	gi|408405881|ref|YP_006863864.1|	-	0.085	12.3	0.5	0.61	9.6	0.1	2.3	2	0	0	2	2	2	0	TFIIE	alpha	subunit
HTH_24	PF13412.1	gi|408405881|ref|YP_006863864.1|	-	0.18	11.2	1.9	0.31	10.4	0.0	2.4	3	0	0	3	3	3	0	Winged	helix-turn-helix	DNA-binding
Sugar_tr	PF00083.19	gi|408405882|ref|YP_006863865.1|	-	1.1e-43	149.4	25.2	1.4e-43	149.1	17.5	1.0	1	0	0	1	1	1	1	Sugar	(and	other)	transporter
MFS_1	PF07690.11	gi|408405882|ref|YP_006863865.1|	-	1.2e-35	122.8	50.9	1.6e-32	112.6	15.3	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
DUF1228	PF06779.9	gi|408405882|ref|YP_006863865.1|	-	0.00054	19.9	4.7	0.019	14.9	0.4	3.0	2	1	1	3	3	3	2	Protein	of	unknown	function	(DUF1228)
Glyoxalase	PF00903.20	gi|408405883|ref|YP_006863866.1|	-	0.006	16.5	0.0	0.006	16.5	0.0	1.1	1	0	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_2	PF12681.2	gi|408405883|ref|YP_006863866.1|	-	0.077	13.6	0.0	0.079	13.5	0.0	1.1	1	0	0	1	1	1	0	Glyoxalase-like	domain
MEDS	PF14417.1	gi|408405886|ref|YP_006863869.1|	-	0.0015	17.6	0.0	0.0017	17.4	0.0	1.1	1	0	0	1	1	1	1	MEDS:	MEthanogen/methylotroph,	DcmR	Sensory	domain
DUF1075	PF06388.6	gi|408405886|ref|YP_006863869.1|	-	0.024	14.2	0.1	0.028	14.0	0.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1075)
SelR	PF01641.13	gi|408405887|ref|YP_006863870.1|	-	4.6e-37	126.4	0.0	5.5e-37	126.2	0.0	1.0	1	0	0	1	1	1	1	SelR	domain
RIG-I_C-RD	PF11648.3	gi|408405887|ref|YP_006863870.1|	-	0.0023	17.8	0.1	2	8.2	0.0	2.1	2	0	0	2	2	2	2	C-terminal	domain	of	RIG-I
Tnp_zf-ribbon_2	PF13842.1	gi|408405887|ref|YP_006863870.1|	-	0.068	13.5	0.2	9.2	6.7	0.0	2.4	2	0	0	2	2	2	0	DDE_Tnp_1-like	zinc-ribbon
GFA	PF04828.9	gi|408405887|ref|YP_006863870.1|	-	0.16	11.9	1.0	3.8	7.5	0.1	2.2	1	1	1	2	2	2	0	Glutathione-dependent	formaldehyde-activating	enzyme
Ribosomal_L37e	PF01907.14	gi|408405887|ref|YP_006863870.1|	-	0.22	11.3	0.2	0.22	11.3	0.1	2.5	3	0	0	3	3	3	0	Ribosomal	protein	L37e
DZR	PF12773.2	gi|408405887|ref|YP_006863870.1|	-	0.22	11.3	4.1	3.6	7.4	2.8	2.3	1	1	0	1	1	1	0	Double	zinc	ribbon
zf-HIT	PF04438.11	gi|408405887|ref|YP_006863870.1|	-	0.28	10.8	2.1	1.8	8.2	0.2	2.3	2	0	0	2	2	2	0	HIT	zinc	finger
TF_Zn_Ribbon	PF08271.7	gi|408405887|ref|YP_006863870.1|	-	0.45	9.8	2.3	6.4	6.1	0.3	2.4	2	0	0	2	2	2	0	TFIIB	zinc-binding
RRN7	PF11781.3	gi|408405887|ref|YP_006863870.1|	-	1.3	8.5	5.4	2.8	7.5	1.6	2.2	2	0	0	2	2	2	0	RNA	polymerase	I-specific	transcription	initiation	factor	Rrn7
PMSR	PF01625.16	gi|408405888|ref|YP_006863871.1|	-	1.8e-63	213.1	0.2	2.2e-63	212.7	0.2	1.1	1	0	0	1	1	1	1	Peptide	methionine	sulfoxide	reductase
GN3L_Grn1	PF08701.6	gi|408405888|ref|YP_006863871.1|	-	0.08	12.8	0.4	0.12	12.2	0.3	1.2	1	0	0	1	1	1	0	GNL3L/Grn1	putative	GTPase
DUF2795	PF11387.3	gi|408405889|ref|YP_006863872.1|	-	3e-05	23.7	0.2	6.1e-05	22.8	0.1	1.5	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF2795)
eIF-5_eIF-2B	PF01873.12	gi|408405890|ref|YP_006863873.1|	-	0.11	12.1	0.0	0.12	12.0	0.0	1.0	1	0	0	1	1	1	0	Domain	found	in	IF2B/IF5
zinc-ribbons_6	PF07191.7	gi|408405891|ref|YP_006863874.1|	-	6.4e-05	22.6	1.4	0.038	13.7	0.1	2.1	2	0	0	2	2	2	2	zinc-ribbons
DZR	PF12773.2	gi|408405891|ref|YP_006863874.1|	-	0.00078	19.2	0.1	0.0011	18.7	0.1	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
DNA_ligase_ZBD	PF03119.11	gi|408405891|ref|YP_006863874.1|	-	0.001	18.6	0.3	0.001	18.6	0.2	1.7	2	0	0	2	2	1	1	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
Zn-ribbon_8	PF09723.5	gi|408405891|ref|YP_006863874.1|	-	0.0061	16.4	3.8	0.26	11.2	0.0	2.2	2	0	0	2	2	2	1	Zinc	ribbon	domain
Nudix_N_2	PF14803.1	gi|408405891|ref|YP_006863874.1|	-	0.007	16.0	3.8	0.013	15.1	0.1	2.1	2	0	0	2	2	2	1	Nudix	N-terminal
TF_Zn_Ribbon	PF08271.7	gi|408405891|ref|YP_006863874.1|	-	0.011	15.0	1.9	0.39	10.0	0.1	2.2	2	0	0	2	2	2	0	TFIIB	zinc-binding
Lar_restr_allev	PF14354.1	gi|408405891|ref|YP_006863874.1|	-	0.012	15.9	0.1	0.015	15.5	0.1	1.3	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
DUF3973	PF13119.1	gi|408405891|ref|YP_006863874.1|	-	0.012	15.4	0.3	0.019	14.8	0.2	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3973)
zf-TFIIB	PF13453.1	gi|408405891|ref|YP_006863874.1|	-	0.013	14.7	2.5	0.031	13.4	1.7	1.6	1	1	0	1	1	1	0	Transcription	factor	zinc-finger
Zn_Tnp_IS1595	PF12760.2	gi|408405891|ref|YP_006863874.1|	-	0.016	14.9	1.3	0.046	13.5	0.9	1.7	1	1	0	1	1	1	0	Transposase	zinc-ribbon	domain
Prim_Zn_Ribbon	PF08273.7	gi|408405891|ref|YP_006863874.1|	-	0.017	15.1	0.5	1.3	9.1	0.1	2.1	2	0	0	2	2	2	0	Zinc-binding	domain	of	primase-helicase
zf-ribbon_3	PF13248.1	gi|408405891|ref|YP_006863874.1|	-	0.022	13.9	0.3	0.63	9.3	0.0	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-ISL3	PF14690.1	gi|408405891|ref|YP_006863874.1|	-	0.026	14.5	0.9	6.4	6.8	0.1	2.3	2	0	0	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
DUF678	PF05077.7	gi|408405891|ref|YP_006863874.1|	-	0.03	14.3	0.1	0.15	12.0	0.0	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF678)
Trm112p	PF03966.11	gi|408405891|ref|YP_006863874.1|	-	0.034	14.5	0.6	0.043	14.1	0.4	1.2	1	0	0	1	1	1	0	Trm112p-like	protein
OrfB_Zn_ribbon	PF07282.6	gi|408405891|ref|YP_006863874.1|	-	0.04	13.5	1.0	0.19	11.3	0.7	1.8	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
zf-IS66	PF13005.2	gi|408405891|ref|YP_006863874.1|	-	0.04	13.8	2.5	0.11	12.4	0.1	2.1	2	0	0	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
zinc_ribbon_2	PF13240.1	gi|408405891|ref|YP_006863874.1|	-	0.042	13.3	3.9	1.1	8.8	0.2	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-RING_2	PF13639.1	gi|408405891|ref|YP_006863874.1|	-	0.043	13.6	0.4	0.069	12.9	0.3	1.4	1	1	0	1	1	1	0	Ring	finger	domain
TFIIS_C	PF01096.13	gi|408405891|ref|YP_006863874.1|	-	0.045	13.4	2.5	1.7	8.3	0.3	2.2	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
zf-C2H2_6	PF13912.1	gi|408405891|ref|YP_006863874.1|	-	0.045	13.6	2.7	0.94	9.4	0.2	2.1	2	0	0	2	2	2	0	C2H2-type	zinc	finger
RRN7	PF11781.3	gi|408405891|ref|YP_006863874.1|	-	0.057	12.9	2.4	5.3	6.6	0.0	2.2	2	0	0	2	2	2	0	RNA	polymerase	I-specific	transcription	initiation	factor	Rrn7
Rad50_zn_hook	PF04423.9	gi|408405891|ref|YP_006863874.1|	-	0.057	12.8	0.4	0.094	12.2	0.3	1.3	1	0	0	1	1	1	0	Rad50	zinc	hook	motif
zf-H2C2_2	PF13465.1	gi|408405891|ref|YP_006863874.1|	-	0.08	13.2	2.3	3.4	8.1	0.2	2.1	2	0	0	2	2	2	0	Zinc-finger	double	domain
A2L_zn_ribbon	PF08792.5	gi|408405891|ref|YP_006863874.1|	-	0.1	12.0	0.7	6.2	6.4	0.1	2.2	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
Rubredoxin	PF00301.15	gi|408405891|ref|YP_006863874.1|	-	0.28	11.0	1.5	1.6	8.6	0.0	2.0	2	0	0	2	2	2	0	Rubredoxin
zf-B_box	PF00643.19	gi|408405891|ref|YP_006863874.1|	-	0.89	9.5	3.2	2	8.3	0.5	2.0	2	0	0	2	2	2	0	B-box	zinc	finger
C1_2	PF03107.11	gi|408405891|ref|YP_006863874.1|	-	1.3	9.1	4.0	2.9	8.1	0.8	2.0	2	0	0	2	2	2	0	C1	domain
Aldo_ket_red	PF00248.16	gi|408405892|ref|YP_006863875.1|	-	2.1e-67	226.8	0.0	2.4e-67	226.7	0.0	1.0	1	0	0	1	1	1	1	Aldo/keto	reductase	family
DUF4064	PF13273.1	gi|408405893|ref|YP_006863876.1|	-	0.0044	17.0	0.1	0.005	16.9	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF4064)
DUF1772	PF08592.6	gi|408405893|ref|YP_006863876.1|	-	0.014	15.1	0.0	0.021	14.5	0.0	1.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF1772)
Cellulase	PF00150.13	gi|408405896|ref|YP_006863879.1|	-	0.00032	19.9	0.0	0.00036	19.8	0.0	1.1	1	0	0	1	1	1	1	Cellulase	(glycosyl	hydrolase	family	5)
Fer4_12	PF13353.1	gi|408405897|ref|YP_006863880.1|	-	1.1e-06	28.8	0.0	2.6e-06	27.5	0.0	1.6	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Radical_SAM	PF04055.16	gi|408405897|ref|YP_006863880.1|	-	2.8e-06	27.6	0.0	6.9e-06	26.3	0.0	1.7	1	0	0	1	1	1	1	Radical	SAM	superfamily
Fer4_14	PF13394.1	gi|408405897|ref|YP_006863880.1|	-	1.6e-05	24.9	2.3	1.7e-05	24.8	0.0	2.1	2	0	0	2	2	2	1	4Fe-4S	single	cluster	domain
AbfB	PF05270.8	gi|408405897|ref|YP_006863880.1|	-	0.057	13.1	0.0	0.13	11.9	0.0	1.7	1	0	0	1	1	1	0	Alpha-L-arabinofuranosidase	B	(ABFB)
RRM_6	PF14259.1	gi|408405900|ref|YP_006863883.1|	-	0.12	12.3	0.0	7.9	6.5	0.0	2.3	2	0	0	2	2	2	0	RNA	recognition	motif	(a.k.a.	RRM,	RBD,	or	RNP	domain)
Sushi_2	PF09014.5	gi|408405901|ref|YP_006863884.1|	-	0.097	12.4	0.1	0.17	11.6	0.1	1.4	1	0	0	1	1	1	0	Beta-2-glycoprotein-1	fifth	domain
DZR	PF12773.2	gi|408405902|ref|YP_006863885.1|	-	0.057	13.2	0.8	0.1	12.4	0.5	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
Rdx	PF10262.4	gi|408405902|ref|YP_006863885.1|	-	0.15	12.1	1.1	4.6	7.3	0.1	2.5	2	1	0	2	2	2	0	Rdx	family
Uteroglobin	PF01099.12	gi|408405903|ref|YP_006863886.1|	-	0.065	13.0	0.1	0.28	11.0	0.0	1.9	1	1	1	2	2	2	0	Uteroglobin	family
Response_reg	PF00072.19	gi|408405904|ref|YP_006863887.1|	-	1.6e-18	66.7	0.0	2e-18	66.3	0.0	1.1	1	0	0	1	1	1	1	Response	regulator	receiver	domain
CcmH	PF03918.9	gi|408405905|ref|YP_006863888.1|	-	0.13	11.2	0.2	0.21	10.6	0.1	1.4	1	1	0	1	1	1	0	Cytochrome	C	biogenesis	protein
HAMP	PF00672.20	gi|408405906|ref|YP_006863889.1|	-	6.4e-05	23.0	0.0	0.0001	22.4	0.0	1.3	1	0	0	1	1	1	1	HAMP	domain
HisKA	PF00512.20	gi|408405907|ref|YP_006863890.1|	-	0.00044	20.1	0.2	0.0005	20.0	0.1	1.1	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c	PF02518.21	gi|408405908|ref|YP_006863891.1|	-	1.7e-10	40.6	0.1	1.9e-10	40.4	0.1	1.1	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
Response_reg	PF00072.19	gi|408405909|ref|YP_006863892.1|	-	3.1e-07	30.3	0.4	5.3e-07	29.6	0.1	1.5	2	0	0	2	2	2	1	Response	regulator	receiver	domain
HATPase_c	PF02518.21	gi|408405910|ref|YP_006863893.1|	-	8.5e-21	73.7	0.3	1.1e-20	73.4	0.2	1.1	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.1	gi|408405910|ref|YP_006863893.1|	-	0.0062	16.3	0.0	0.0092	15.7	0.0	1.3	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
YABBY	PF04690.8	gi|408405911|ref|YP_006863894.1|	-	0.076	13.2	0.0	0.19	11.9	0.0	1.6	2	0	0	2	2	2	0	YABBY	protein
HMG_box	PF00505.14	gi|408405911|ref|YP_006863894.1|	-	0.096	12.9	0.0	0.27	11.5	0.0	1.7	1	0	0	1	1	1	0	HMG	(high	mobility	group)	box
YqhR	PF11085.3	gi|408405913|ref|YP_006863896.1|	-	0.1	12.0	4.6	0.75	9.3	2.1	2.1	1	1	1	2	2	2	0	Conserved	membrane	protein	YqhR
DUF1691	PF07950.6	gi|408405913|ref|YP_006863896.1|	-	0.13	12.1	3.0	2.5	8.0	0.1	2.4	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1691)
PrsW-protease	PF13367.1	gi|408405913|ref|YP_006863896.1|	-	0.46	9.6	12.4	4.8	6.3	0.2	2.9	1	1	0	2	2	2	0	Protease	prsW	family
DUF543	PF04418.7	gi|408405913|ref|YP_006863896.1|	-	5.1	7.1	6.6	9.5	6.2	1.0	3.0	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF543)
DUF2937	PF11157.3	gi|408405914|ref|YP_006863897.1|	-	0.029	13.7	0.0	0.029	13.7	0.0	2.6	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF2937)
Trep_Strep	PF09605.5	gi|408405914|ref|YP_006863897.1|	-	0.59	9.7	9.3	0.82	9.3	6.5	1.1	1	0	0	1	1	1	0	Hypothetical	bacterial	integral	membrane	protein	(Trep_Strep)
DUF892	PF05974.7	gi|408405915|ref|YP_006863898.1|	-	4.1e-10	39.6	3.5	4.2e-06	26.6	0.1	2.7	2	1	0	2	2	2	2	Domain	of	unknown	function	(DUF892)
Coat_F	PF07875.7	gi|408405915|ref|YP_006863898.1|	-	0.083	13.0	0.2	0.083	13.0	0.2	2.0	2	0	0	2	2	2	0	Coat	F	domain
Lir1	PF07207.6	gi|408405915|ref|YP_006863898.1|	-	0.11	12.7	0.3	0.11	12.7	0.2	1.6	2	0	0	2	2	2	0	Light	regulated	protein	Lir1
nsp8	PF08717.5	gi|408405915|ref|YP_006863898.1|	-	0.26	10.8	3.2	0.47	10.0	2.2	1.4	1	0	0	1	1	1	0	nsp8	replicase
DUF2011	PF09428.5	gi|408405915|ref|YP_006863898.1|	-	1.7	8.5	13.1	0.31	10.9	5.7	2.0	2	0	0	2	2	2	0	Fungal	protein	of	unknown	function	(DUF2011)
Rad50_zn_hook	PF04423.9	gi|408405917|ref|YP_006863900.1|	-	0.038	13.4	4.2	0.069	12.6	0.4	2.3	2	0	0	2	2	2	0	Rad50	zinc	hook	motif
Cys_rich_CPCC	PF14206.1	gi|408405917|ref|YP_006863900.1|	-	1.2	8.7	5.9	1.8	8.1	0.4	2.2	2	0	0	2	2	2	0	Cysteine-rich	CPCC
C1_1	PF00130.17	gi|408405917|ref|YP_006863900.1|	-	1.3	8.8	8.8	0.4	10.4	3.8	1.8	1	1	1	2	2	2	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
Cupredoxin_1	PF13473.1	gi|408405918|ref|YP_006863901.1|	-	1.5e-09	37.6	0.3	2.3e-09	37.0	0.2	1.2	1	0	0	1	1	1	1	Cupredoxin-like	domain
Copper-bind	PF00127.15	gi|408405918|ref|YP_006863901.1|	-	0.01	16.0	0.8	0.015	15.4	0.5	1.4	1	1	0	1	1	1	0	Copper	binding	proteins,	plastocyanin/azurin	family
COX2	PF00116.15	gi|408405918|ref|YP_006863901.1|	-	0.055	13.2	0.0	0.084	12.7	0.0	1.3	1	0	0	1	1	1	0	Cytochrome	C	oxidase	subunit	II,	periplasmic	domain
DUF2207	PF09972.4	gi|408405919|ref|YP_006863902.1|	-	0.0031	16.1	0.4	0.0036	15.9	0.3	1.0	1	0	0	1	1	1	1	Predicted	membrane	protein	(DUF2207)
DUF2142	PF09913.4	gi|408405919|ref|YP_006863902.1|	-	0.016	13.8	0.5	0.018	13.7	0.4	1.1	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2142)
DUF2955	PF11168.3	gi|408405919|ref|YP_006863902.1|	-	0.032	13.8	1.4	0.039	13.6	1.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2955)
DUF4231	PF14015.1	gi|408405919|ref|YP_006863902.1|	-	0.098	12.6	3.0	0.21	11.5	2.0	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF4231)
Tetraspannin	PF00335.15	gi|408405919|ref|YP_006863902.1|	-	0.11	11.7	0.6	2.5	7.3	0.0	2.0	2	0	0	2	2	2	0	Tetraspanin	family
DUF2976	PF11190.3	gi|408405919|ref|YP_006863902.1|	-	0.78	9.3	7.3	0.095	12.2	2.1	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2976)
Lipase_chap	PF03280.9	gi|408405919|ref|YP_006863902.1|	-	1.7	8.0	4.6	0.77	9.2	0.6	1.9	2	0	0	2	2	2	0	Proteobacterial	lipase	chaperone	protein
DUF308	PF03729.8	gi|408405919|ref|YP_006863902.1|	-	3.4	7.7	10.4	7.6	6.6	5.4	2.3	1	1	1	2	2	2	0	Short	repeat	of	unknown	function	(DUF308)
Holin_BlyA	PF05102.7	gi|408405919|ref|YP_006863902.1|	-	8.5	6.1	7.2	64	3.3	4.8	2.5	1	1	1	2	2	2	0	holin,	BlyA	family
HTH_45	PF14947.1	gi|408405920|ref|YP_006863903.1|	-	1.2e-07	31.4	0.3	2.1e-07	30.6	0.2	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix
TrmB	PF01978.14	gi|408405920|ref|YP_006863903.1|	-	0.021	14.4	0.0	0.035	13.8	0.0	1.3	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
MarR	PF01047.17	gi|408405920|ref|YP_006863903.1|	-	0.022	14.4	0.0	0.041	13.5	0.0	1.5	1	0	0	1	1	1	0	MarR	family
HTH_34	PF13601.1	gi|408405920|ref|YP_006863903.1|	-	0.029	14.3	0.0	0.043	13.8	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
PadR	PF03551.9	gi|408405920|ref|YP_006863903.1|	-	0.031	14.0	0.0	0.053	13.2	0.0	1.4	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
DUF2680	PF10925.3	gi|408405920|ref|YP_006863903.1|	-	0.035	13.9	0.5	1.1	9.1	0.0	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2680)
HATPase_c	PF02518.21	gi|408405921|ref|YP_006863904.1|	-	1.9e-30	104.8	0.1	2e-28	98.3	0.0	3.5	4	0	0	4	4	4	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.20	gi|408405921|ref|YP_006863904.1|	-	7.6e-12	45.0	2.5	4.7e-11	42.5	0.3	2.8	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_2	PF13581.1	gi|408405921|ref|YP_006863904.1|	-	2.6e-06	27.2	0.1	1.5e-05	24.8	0.0	2.3	2	0	0	2	2	2	1	Histidine	kinase-like	ATPase	domain
Regulator_TrmB	PF11495.3	gi|408405921|ref|YP_006863904.1|	-	1.1e-05	24.4	1.7	0.00031	19.8	0.1	2.7	2	0	0	2	2	2	1	Archaeal	transcriptional	regulator	TrmB
PLDc_2	PF13091.1	gi|408405921|ref|YP_006863904.1|	-	4.9e-05	23.0	0.0	0.012	15.3	0.0	2.9	2	0	0	2	2	2	1	PLD-like	domain
HATPase_c_5	PF14501.1	gi|408405921|ref|YP_006863904.1|	-	7.4e-05	22.3	0.0	0.00053	19.6	0.0	2.4	2	1	0	2	2	2	1	GHKL	domain
HATPase_c_3	PF13589.1	gi|408405921|ref|YP_006863904.1|	-	0.0012	18.5	0.0	0.028	14.0	0.0	2.5	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
ATG_C	PF09333.6	gi|408405921|ref|YP_006863904.1|	-	0.019	15.1	0.0	0.059	13.5	0.0	1.8	1	0	0	1	1	1	0	ATG	C	terminal	domain
Matrilin_ccoil	PF10393.4	gi|408405921|ref|YP_006863904.1|	-	0.044	13.1	0.8	0.12	11.7	0.5	1.8	1	0	0	1	1	1	0	Trimeric	coiled-coil	oligomerisation	domain	of	matrilin
DUF496	PF04363.7	gi|408405921|ref|YP_006863904.1|	-	0.17	11.7	4.0	2	8.3	0.1	3.0	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF496)
Snapin_Pallidin	PF14712.1	gi|408405921|ref|YP_006863904.1|	-	0.22	11.8	0.2	0.22	11.8	0.1	2.5	2	0	0	2	2	2	0	Snapin/Pallidin
Syntaxin-6_N	PF09177.6	gi|408405921|ref|YP_006863904.1|	-	1.6	9.1	7.9	0.38	11.1	0.2	3.0	3	0	0	3	3	3	0	Syntaxin	6,	N-terminal
Response_reg	PF00072.19	gi|408405922|ref|YP_006863905.1|	-	2e-14	53.5	0.0	2.4e-14	53.2	0.0	1.1	1	0	0	1	1	1	1	Response	regulator	receiver	domain
Glyco_trans_4_2	PF13477.1	gi|408405922|ref|YP_006863905.1|	-	0.078	12.8	0.0	0.11	12.3	0.0	1.2	1	0	0	1	1	1	0	Glycosyl	transferase	4-like
Mut7-C	PF01927.11	gi|408405925|ref|YP_006863908.1|	-	0.0053	16.7	0.2	0.0065	16.4	0.2	1.3	1	1	0	1	1	1	1	Mut7-C	RNAse	domain
DUF188	PF02639.9	gi|408405925|ref|YP_006863908.1|	-	0.038	13.4	0.3	0.11	11.9	0.2	1.8	1	1	0	1	1	1	0	Uncharacterized	BCR,	YaiI/YqxD	family	COG1671
DUF2590	PF10761.4	gi|408405925|ref|YP_006863908.1|	-	0.12	12.1	0.2	0.18	11.5	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2590)
LTXXQ	PF07813.7	gi|408405927|ref|YP_006863910.1|	-	0.00066	20.0	0.0	0.001	19.4	0.0	1.4	1	0	0	1	1	1	1	LTXXQ	motif	family	protein
DUF2680	PF10925.3	gi|408405927|ref|YP_006863910.1|	-	0.064	13.1	0.0	0.12	12.2	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2680)
HxlR	PF01638.12	gi|408405928|ref|YP_006863911.1|	-	2.8e-08	33.2	0.0	2.9e-08	33.2	0.0	1.0	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
HTH_24	PF13412.1	gi|408405928|ref|YP_006863911.1|	-	0.0031	16.8	0.1	0.0098	15.2	0.0	1.7	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
MarR	PF01047.17	gi|408405928|ref|YP_006863911.1|	-	0.012	15.2	0.0	0.017	14.7	0.0	1.3	1	0	0	1	1	1	0	MarR	family
HxlR	PF01638.12	gi|408405929|ref|YP_006863912.1|	-	7.4e-05	22.3	0.0	7.7e-05	22.2	0.0	1.0	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
Cyt_c_ox_IV	PF12270.3	gi|408405934|ref|YP_006863917.1|	-	0.11	12.2	0.4	0.11	12.2	0.3	2.0	2	1	1	3	3	3	0	Cytochrome	c	oxidase	subunit	IV
DUF1201	PF06716.6	gi|408405934|ref|YP_006863917.1|	-	0.17	11.7	1.1	0.94	9.3	0.2	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1201)
AsnC_trans_reg	PF01037.16	gi|408405935|ref|YP_006863918.1|	-	6e-05	22.6	1.3	9.8e-05	21.9	0.9	1.3	1	1	0	1	1	1	1	AsnC	family
DZR	PF12773.2	gi|408405936|ref|YP_006863919.1|	-	0.0072	16.1	1.8	0.011	15.5	1.2	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-NADH-PPase	PF09297.6	gi|408405936|ref|YP_006863919.1|	-	0.038	13.4	5.4	0.52	9.8	0.8	2.2	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
zf-C3HC4_3	PF13920.1	gi|408405936|ref|YP_006863919.1|	-	0.06	13.0	1.2	0.08	12.6	0.8	1.2	1	0	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
DUF1272	PF06906.6	gi|408405936|ref|YP_006863919.1|	-	0.089	12.6	1.1	0.13	12.1	0.8	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1272)
PolC_DP2	PF03833.8	gi|408405936|ref|YP_006863919.1|	-	0.11	10.1	0.5	0.13	9.9	0.3	1.1	1	0	0	1	1	1	0	DNA	polymerase	II	large	subunit	DP2
zf-ribbon_3	PF13248.1	gi|408405936|ref|YP_006863919.1|	-	0.35	10.1	5.2	1.7	7.9	3.6	1.9	1	1	0	1	1	1	0	zinc-ribbon	domain
Zn-ribbon_8	PF09723.5	gi|408405936|ref|YP_006863919.1|	-	0.53	10.2	6.7	4.8	7.2	4.6	2.0	1	1	0	1	1	1	0	Zinc	ribbon	domain
TFIIS_C	PF01096.13	gi|408405936|ref|YP_006863919.1|	-	0.79	9.4	4.0	4.2	7.0	0.2	2.2	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
zinc_ribbon_2	PF13240.1	gi|408405936|ref|YP_006863919.1|	-	1.2	8.6	7.1	4.5	6.8	1.1	2.2	1	1	2	3	3	2	0	zinc-ribbon	domain
RRN7	PF11781.3	gi|408405936|ref|YP_006863919.1|	-	1.3	8.5	5.1	1.4	8.4	0.7	2.2	1	1	1	2	2	2	0	RNA	polymerase	I-specific	transcription	initiation	factor	Rrn7
Ribosomal_L24e	PF01246.15	gi|408405938|ref|YP_006863921.1|	-	1.4e-17	63.3	1.2	1.7e-17	63.0	0.8	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L24e
Arc_trans_TRASH	PF08394.5	gi|408405938|ref|YP_006863921.1|	-	0.0083	16.2	0.1	0.018	15.1	0.0	1.6	1	1	1	2	2	2	1	Archaeal	TRASH	domain
zf-FCS	PF06467.9	gi|408405938|ref|YP_006863921.1|	-	0.025	14.2	0.5	0.34	10.5	0.0	2.1	2	0	0	2	2	2	0	MYM-type	Zinc	finger	with	FCS	sequence	motif
A2L_zn_ribbon	PF08792.5	gi|408405938|ref|YP_006863921.1|	-	0.054	12.9	1.1	2.7	7.5	0.1	2.2	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
DUF2116	PF09889.4	gi|408405938|ref|YP_006863921.1|	-	0.085	12.6	0.6	3.6	7.4	0.0	2.1	2	0	0	2	2	2	0	Uncharacterized	protein	containing	a	Zn-ribbon	(DUF2116)
zf-ribbon_3	PF13248.1	gi|408405938|ref|YP_006863921.1|	-	0.19	10.9	0.1	0.19	10.9	0.1	1.7	2	0	0	2	2	2	0	zinc-ribbon	domain
Zn_ribbon_recom	PF13408.1	gi|408405938|ref|YP_006863921.1|	-	0.31	11.3	1.7	0.54	10.5	1.2	1.5	1	1	0	1	1	1	0	Recombinase	zinc	beta	ribbon	domain
HATPase_c	PF02518.21	gi|408405939|ref|YP_006863922.1|	-	1e-13	50.9	0.0	1.9e-13	50.1	0.0	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.20	gi|408405939|ref|YP_006863922.1|	-	4.5e-07	29.7	2.2	1.2e-06	28.4	1.0	2.0	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_5	PF14501.1	gi|408405939|ref|YP_006863922.1|	-	0.047	13.4	0.0	0.11	12.2	0.0	1.6	1	0	0	1	1	1	0	GHKL	domain
HATPase_c_3	PF13589.1	gi|408405939|ref|YP_006863922.1|	-	0.062	12.9	0.0	0.12	11.9	0.0	1.5	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.1	gi|408405939|ref|YP_006863922.1|	-	0.11	12.2	0.0	0.27	11.0	0.0	1.6	1	0	0	1	1	1	0	Histidine	kinase-like	ATPase	domain
Fe_dep_repr_C	PF02742.10	gi|408405941|ref|YP_006863924.1|	-	0.16	11.6	0.4	0.23	11.1	0.3	1.2	1	0	0	1	1	1	0	Iron	dependent	repressor,	metal	binding	and	dimerisation	domain
Aminotran_3	PF00202.16	gi|408405942|ref|YP_006863925.1|	-	6.7e-49	166.5	0.0	7.5e-49	166.3	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class-III
Beta_elim_lyase	PF01212.16	gi|408405942|ref|YP_006863925.1|	-	0.00073	18.7	0.0	0.00094	18.4	0.0	1.2	1	0	0	1	1	1	1	Beta-eliminating	lyase
Aminotran_1_2	PF00155.16	gi|408405942|ref|YP_006863925.1|	-	0.037	12.9	0.0	0.055	12.4	0.0	1.2	1	0	0	1	1	1	0	Aminotransferase	class	I	and	II
zf-C2H2_4	PF13894.1	gi|408405944|ref|YP_006863927.1|	-	0.00086	19.4	0.3	0.0015	18.7	0.2	1.4	1	0	0	1	1	1	1	C2H2-type	zinc	finger
zf-C2H2_jaz	PF12171.3	gi|408405944|ref|YP_006863927.1|	-	0.0039	17.2	0.2	0.0063	16.6	0.1	1.3	1	0	0	1	1	1	1	Zinc-finger	double-stranded	RNA-binding
zf-C2H2_6	PF13912.1	gi|408405944|ref|YP_006863927.1|	-	0.027	14.3	0.2	0.027	14.3	0.1	1.6	2	0	0	2	2	2	0	C2H2-type	zinc	finger
zf-C2H2	PF00096.21	gi|408405944|ref|YP_006863927.1|	-	0.033	14.5	0.3	0.057	13.7	0.2	1.4	1	0	0	1	1	1	0	Zinc	finger,	C2H2	type
zf-H2C2_5	PF13909.1	gi|408405944|ref|YP_006863927.1|	-	0.047	13.9	0.3	0.079	13.2	0.2	1.4	1	0	0	1	1	1	0	C2H2-type	zinc-finger	domain
zf-met	PF12874.2	gi|408405944|ref|YP_006863927.1|	-	0.11	12.7	0.2	0.18	12.0	0.1	1.4	1	0	0	1	1	1	0	Zinc-finger	of	C2H2	type
AmoC	PF04896.7	gi|408405946|ref|YP_006863929.1|	-	6.7e-16	58.0	5.3	8.2e-16	57.8	3.7	1.1	1	0	0	1	1	1	1	Ammonia	monooxygenase/methane	monooxygenase,	subunit	C
OAD_gamma	PF04277.8	gi|408405946|ref|YP_006863929.1|	-	0.43	10.9	1.7	3	8.3	0.0	2.2	2	0	0	2	2	2	0	Oxaloacetate	decarboxylase,	gamma	chain
CcdA	PF07362.7	gi|408405947|ref|YP_006863930.1|	-	0.058	13.2	0.3	0.13	12.1	0.0	1.7	2	0	0	2	2	2	0	Post-segregation	antitoxin	CcdA
HTH_32	PF13565.1	gi|408405947|ref|YP_006863930.1|	-	0.12	13.2	0.1	0.48	11.2	0.0	1.9	2	0	0	2	2	2	0	Homeodomain-like	domain
Sec23_helical	PF04815.10	gi|408405947|ref|YP_006863930.1|	-	0.12	11.8	0.0	0.29	10.5	0.0	1.7	1	0	0	1	1	1	0	Sec23/Sec24	helical	domain
Ammonium_transp	PF00909.16	gi|408405948|ref|YP_006863931.1|	-	4.6e-116	387.5	36.0	5.6e-116	387.2	24.9	1.1	1	0	0	1	1	1	1	Ammonium	Transporter	Family
K-cyclin_vir_C	PF09080.5	gi|408405948|ref|YP_006863931.1|	-	4.6	7.5	7.0	9.6	6.4	0.0	2.6	2	0	0	2	2	2	0	K	cyclin,	C	terminal
NIF3	PF01784.13	gi|408405949|ref|YP_006863932.1|	-	0.0099	15.4	0.0	0.011	15.3	0.0	1.1	1	0	0	1	1	1	1	NIF3	(NGG1p	interacting	factor	3)
ABC_tran	PF00005.22	gi|408405950|ref|YP_006863933.1|	-	7.3e-34	117.0	0.0	1e-33	116.5	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|408405950|ref|YP_006863933.1|	-	2.9e-14	53.7	0.5	8.9e-13	48.8	0.3	2.1	1	1	0	1	1	1	1	AAA	domain
AAA_22	PF13401.1	gi|408405950|ref|YP_006863933.1|	-	9e-06	25.8	0.1	0.00012	22.1	0.1	2.2	1	1	0	1	1	1	1	AAA	domain
AAA_29	PF13555.1	gi|408405950|ref|YP_006863933.1|	-	2.4e-05	23.7	0.1	4.6e-05	22.8	0.1	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.1	gi|408405950|ref|YP_006863933.1|	-	7.1e-05	22.8	0.4	0.00052	20.0	0.3	2.2	1	1	0	1	1	1	1	AAA	ATPase	domain
DUF258	PF03193.11	gi|408405950|ref|YP_006863933.1|	-	7.3e-05	22.0	0.1	0.00012	21.3	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
SMC_N	PF02463.14	gi|408405950|ref|YP_006863933.1|	-	0.00014	21.1	0.5	0.12	11.5	0.1	2.2	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_25	PF13481.1	gi|408405950|ref|YP_006863933.1|	-	0.00024	20.5	0.1	0.0049	16.2	0.1	2.2	1	1	0	1	1	1	1	AAA	domain
IstB_IS21	PF01695.12	gi|408405950|ref|YP_006863933.1|	-	0.0005	19.5	0.0	0.067	12.6	0.0	2.2	2	0	0	2	2	2	1	IstB-like	ATP	binding	protein
AAA_10	PF12846.2	gi|408405950|ref|YP_006863933.1|	-	0.0016	17.9	0.8	0.012	15.0	0.2	2.1	1	1	1	2	2	2	1	AAA-like	domain
AAA_23	PF13476.1	gi|408405950|ref|YP_006863933.1|	-	0.0054	17.0	0.1	0.0091	16.3	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_17	PF13207.1	gi|408405950|ref|YP_006863933.1|	-	0.0056	17.4	0.0	0.011	16.5	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
AAA_15	PF13175.1	gi|408405950|ref|YP_006863933.1|	-	0.013	14.6	0.0	0.39	9.7	0.0	2.1	1	1	0	2	2	2	0	AAA	ATPase	domain
AAA_18	PF13238.1	gi|408405950|ref|YP_006863933.1|	-	0.018	15.3	0.0	0.042	14.1	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
T2SE	PF00437.15	gi|408405950|ref|YP_006863933.1|	-	0.021	13.7	0.1	0.034	13.0	0.1	1.2	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
MobB	PF03205.9	gi|408405950|ref|YP_006863933.1|	-	0.03	14.0	0.1	0.078	12.6	0.0	1.7	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
SbcCD_C	PF13558.1	gi|408405950|ref|YP_006863933.1|	-	0.03	14.2	0.1	0.22	11.4	0.1	2.1	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
AAA_33	PF13671.1	gi|408405950|ref|YP_006863933.1|	-	0.032	14.1	0.2	0.056	13.3	0.1	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_19	PF13245.1	gi|408405950|ref|YP_006863933.1|	-	0.036	13.8	0.0	0.11	12.2	0.0	1.8	1	0	0	1	1	1	0	Part	of	AAA	domain
MMR_HSR1	PF01926.18	gi|408405950|ref|YP_006863933.1|	-	0.038	13.9	0.5	0.063	13.2	0.3	1.8	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
NACHT	PF05729.7	gi|408405950|ref|YP_006863933.1|	-	0.1	12.2	0.0	0.18	11.4	0.0	1.5	1	0	0	1	1	1	0	NACHT	domain
NB-ARC	PF00931.17	gi|408405950|ref|YP_006863933.1|	-	0.12	11.2	0.1	0.21	10.3	0.1	1.4	1	0	0	1	1	1	0	NB-ARC	domain
MacB_PCD	PF12704.2	gi|408405951|ref|YP_006863934.1|	-	1.9e-26	93.1	2.2	1.9e-26	93.1	1.5	2.7	2	2	1	3	3	3	1	MacB-like	periplasmic	core	domain
FtsX	PF02687.16	gi|408405951|ref|YP_006863934.1|	-	1.3e-24	86.2	5.7	1.3e-24	86.2	3.9	2.2	2	0	0	2	2	2	1	FtsX-like	permease	family
RVP	PF00077.15	gi|408405953|ref|YP_006863936.1|	-	0.0045	16.8	0.0	0.01	15.7	0.0	1.6	1	1	0	1	1	1	1	Retroviral	aspartyl	protease
Pterin_4a	PF01329.14	gi|408405955|ref|YP_006863938.1|	-	1.1e-35	121.2	0.2	1.2e-35	121.0	0.1	1.0	1	0	0	1	1	1	1	Pterin	4	alpha	carbinolamine	dehydratase
Fer4	PF00037.22	gi|408405956|ref|YP_006863939.1|	-	1.2e-09	37.2	11.8	1.6e-06	27.4	0.9	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.2	gi|408405956|ref|YP_006863939.1|	-	1.3e-09	38.2	27.7	1.7e-06	28.3	6.9	2.1	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|408405956|ref|YP_006863939.1|	-	7e-08	32.6	6.2	2e-07	31.1	4.3	1.7	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_8	PF13183.1	gi|408405956|ref|YP_006863939.1|	-	1.5e-07	31.3	24.2	3.6e-05	23.6	5.9	2.1	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_6	PF12837.2	gi|408405956|ref|YP_006863939.1|	-	3.1e-07	29.9	12.6	0.002	17.9	2.7	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_2	PF12797.2	gi|408405956|ref|YP_006863939.1|	-	3.4e-07	29.8	11.5	0.0015	18.3	1.1	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_10	PF13237.1	gi|408405956|ref|YP_006863939.1|	-	5.9e-07	29.1	19.9	1.1e-05	25.1	6.7	2.1	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_15	PF13459.1	gi|408405956|ref|YP_006863939.1|	-	4.7e-06	27.0	7.6	0.0046	17.4	1.3	2.7	2	1	0	2	2	2	2	4Fe-4S	single	cluster	domain
Fer4_21	PF14697.1	gi|408405956|ref|YP_006863939.1|	-	6.8e-06	25.8	7.2	0.00025	20.8	5.0	2.2	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_17	PF13534.1	gi|408405956|ref|YP_006863939.1|	-	9.4e-06	25.8	11.1	0.00016	21.9	4.5	2.0	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_13	PF13370.1	gi|408405956|ref|YP_006863939.1|	-	1e-05	25.8	6.2	0.0082	16.5	0.1	2.9	3	0	0	3	3	3	2	4Fe-4S	single	cluster	domain
Fer4_4	PF12800.2	gi|408405956|ref|YP_006863939.1|	-	1.6e-05	24.8	6.6	0.036	14.4	1.2	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_18	PF13746.1	gi|408405956|ref|YP_006863939.1|	-	2.2e-05	24.7	8.0	6.7e-05	23.2	4.3	2.2	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.1	gi|408405956|ref|YP_006863939.1|	-	2.5e-05	24.9	6.5	0.0011	19.6	5.3	2.3	1	1	1	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_11	PF13247.1	gi|408405956|ref|YP_006863939.1|	-	0.014	15.2	3.7	1.7	8.6	0.1	2.1	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_3	PF12798.2	gi|408405956|ref|YP_006863939.1|	-	0.028	14.9	15.4	0.13	12.9	0.9	2.3	2	0	0	2	2	2	0	4Fe-4S	binding	domain
DUF1073	PF06381.6	gi|408405956|ref|YP_006863939.1|	-	0.028	12.8	0.0	0.036	12.5	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1073)
OTCace_N	PF02729.16	gi|408405957|ref|YP_006863940.1|	-	1.3e-42	144.7	0.0	2.2e-42	144.0	0.0	1.3	1	0	0	1	1	1	1	Aspartate/ornithine	carbamoyltransferase,	carbamoyl-P	binding	domain
OTCace	PF00185.19	gi|408405957|ref|YP_006863940.1|	-	1.6e-38	132.1	0.0	2.3e-38	131.5	0.0	1.3	1	0	0	1	1	1	1	Aspartate/ornithine	carbamoyltransferase,	Asp/Orn	binding	domain
OrfB_Zn_ribbon	PF07282.6	gi|408405958|ref|YP_006863941.1|	-	2.1e-22	78.5	2.9	3e-22	78.0	1.2	1.9	2	0	0	2	2	2	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.14	gi|408405958|ref|YP_006863941.1|	-	5.4e-16	58.6	1.4	1.1e-15	57.6	1.0	1.6	1	1	0	1	1	1	1	Probable	transposase
Zn_Tnp_IS1595	PF12760.2	gi|408405958|ref|YP_006863941.1|	-	0.0016	18.2	3.7	0.0039	16.9	2.6	1.7	1	0	0	1	1	1	1	Transposase	zinc-ribbon	domain
DUF2387	PF09526.5	gi|408405958|ref|YP_006863941.1|	-	0.0071	16.2	1.8	0.018	14.9	1.2	1.6	1	0	0	1	1	1	1	Probable	metal-binding	protein	(DUF2387)
IBR	PF01485.16	gi|408405958|ref|YP_006863941.1|	-	0.019	14.8	0.6	0.036	13.9	0.4	1.4	1	0	0	1	1	1	0	IBR	domain
UPF0047	PF01894.12	gi|408405959|ref|YP_006863942.1|	-	2.9e-34	117.4	0.0	3.8e-34	117.0	0.0	1.1	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0047
AA_synth	PF06684.6	gi|408405959|ref|YP_006863942.1|	-	0.017	14.5	0.0	0.025	13.9	0.0	1.2	1	0	0	1	1	1	0	Amino	acid	synthesis
DUF2505	PF10698.4	gi|408405959|ref|YP_006863942.1|	-	0.059	12.8	0.0	0.079	12.4	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2505)
Methyltransf_31	PF13847.1	gi|408405960|ref|YP_006863943.1|	-	2.3e-05	24.0	0.0	0.00024	20.7	0.0	2.0	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_11	PF08241.7	gi|408405960|ref|YP_006863943.1|	-	2.9e-05	24.4	0.0	0.00014	22.3	0.0	1.9	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|408405960|ref|YP_006863943.1|	-	0.0012	19.2	0.0	0.0092	16.3	0.0	2.1	2	1	0	2	2	2	1	Methyltransferase	domain
Ubie_methyltran	PF01209.13	gi|408405960|ref|YP_006863943.1|	-	0.0014	17.8	0.0	0.0056	15.8	0.0	1.9	2	0	0	2	2	2	1	ubiE/COQ5	methyltransferase	family
Methyltransf_18	PF12847.2	gi|408405960|ref|YP_006863943.1|	-	0.0031	18.0	0.0	0.019	15.5	0.0	1.9	2	0	0	2	2	2	1	Methyltransferase	domain
UPF0020	PF01170.13	gi|408405960|ref|YP_006863943.1|	-	0.0072	15.9	0.0	0.011	15.3	0.0	1.2	1	0	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
DUF1379	PF07126.7	gi|408405960|ref|YP_006863943.1|	-	0.038	13.3	0.0	0.063	12.6	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1379)
Methyltransf_26	PF13659.1	gi|408405960|ref|YP_006863943.1|	-	0.039	13.9	0.0	0.075	13.0	0.0	1.5	1	0	0	1	1	1	0	Methyltransferase	domain
HTH_34	PF13601.1	gi|408405961|ref|YP_006863944.1|	-	0.002	18.1	0.0	0.0044	17.0	0.0	1.6	1	1	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_27	PF13463.1	gi|408405961|ref|YP_006863944.1|	-	0.0088	16.3	0.0	0.017	15.4	0.0	1.6	1	1	0	1	1	1	1	Winged	helix	DNA-binding	domain
MarR	PF01047.17	gi|408405961|ref|YP_006863944.1|	-	0.013	15.1	0.1	0.026	14.2	0.1	1.5	1	0	0	1	1	1	0	MarR	family
TFIIE_alpha	PF02002.12	gi|408405961|ref|YP_006863944.1|	-	0.03	13.8	0.1	0.048	13.1	0.0	1.5	1	1	0	1	1	1	0	TFIIE	alpha	subunit
Uso1_p115_C	PF04871.8	gi|408405962|ref|YP_006863945.1|	-	0.00038	20.4	0.1	0.00038	20.4	0.1	1.1	1	0	0	1	1	1	1	Uso1	/	p115	like	vesicle	tethering	protein,	C	terminal	region
Nif11	PF07862.6	gi|408405962|ref|YP_006863945.1|	-	0.037	13.9	1.2	0.07	13.0	0.8	1.5	1	0	0	1	1	1	0	Nitrogen	fixation	protein	of	unknown	function
DUF385	PF04075.9	gi|408405963|ref|YP_006863946.1|	-	3.1e-10	40.1	0.0	3.3e-10	40.0	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF385)
Pyridox_oxidase	PF01243.15	gi|408405963|ref|YP_006863946.1|	-	0.077	13.0	0.0	0.092	12.7	0.0	1.2	1	0	0	1	1	1	0	Pyridoxamine	5'-phosphate	oxidase
TrkH	PF02386.11	gi|408405964|ref|YP_006863947.1|	-	1.2e-16	60.3	6.8	1.3e-16	60.1	4.7	1.0	1	0	0	1	1	1	1	Cation	transport	protein
DUF204	PF02659.10	gi|408405964|ref|YP_006863947.1|	-	0.025	14.7	4.2	0.37	10.9	0.2	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	DUF
TrkH	PF02386.11	gi|408406189|ref|YP_006863948.1|	-	3.8e-05	22.4	0.1	3.8e-05	22.4	0.1	2.1	2	1	0	2	2	2	1	Cation	transport	protein
DUF1279	PF06916.8	gi|408406189|ref|YP_006863948.1|	-	0.15	12.3	0.1	0.15	12.3	0.1	1.6	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1279)
DUF161	PF02588.10	gi|408406189|ref|YP_006863948.1|	-	0.29	11.4	2.9	0.3	11.4	0.6	2.1	2	1	0	2	2	2	0	Uncharacterized	BCR,	YitT	family	COG1284
CBS	PF00571.23	gi|408405966|ref|YP_006863950.1|	-	2.8e-09	36.5	0.2	1e-07	31.6	0.0	2.3	2	0	0	2	2	2	2	CBS	domain
CBS	PF00571.23	gi|408405967|ref|YP_006863951.1|	-	0.018	14.8	0.0	0.031	14.0	0.0	1.4	1	0	0	1	1	1	0	CBS	domain
eIF-6	PF01912.13	gi|408405968|ref|YP_006863952.1|	-	7e-60	201.5	0.1	8.4e-60	201.2	0.1	1.1	1	0	0	1	1	1	1	eIF-6	family
MoCF_biosynth	PF00994.19	gi|408405969|ref|YP_006863953.1|	-	1e-30	106.0	0.1	1.5e-30	105.5	0.0	1.2	1	0	0	1	1	1	1	Probable	molybdopterin	binding	domain
HemolysinCabind	PF00353.14	gi|408405971|ref|YP_006863955.1|	-	4.2e-21	73.2	95.9	0.00064	19.8	2.0	10.2	5	2	5	11	11	11	10	Hemolysin-type	calcium-binding	repeat	(2	copies)
FtsZ_C	PF12327.3	gi|408405972|ref|YP_006863956.1|	-	7.3e-27	93.2	0.7	1.8e-26	92.0	0.5	1.7	1	0	0	1	1	1	1	FtsZ	family,	C-terminal	domain
Tubulin	PF00091.20	gi|408405972|ref|YP_006863956.1|	-	9.3e-27	94.2	1.3	4.2e-26	92.1	0.9	1.8	1	1	0	1	1	1	1	Tubulin/FtsZ	family,	GTPase	domain
Tubulin_2	PF13809.1	gi|408405972|ref|YP_006863956.1|	-	0.079	11.8	0.7	0.68	8.8	0.0	2.2	2	0	0	2	2	2	0	Tubulin	like
PALP	PF00291.20	gi|408405972|ref|YP_006863956.1|	-	0.12	11.5	1.5	4.4	6.4	0.0	2.2	1	1	1	2	2	2	0	Pyridoxal-phosphate	dependent	enzyme
zf-C4pol	PF14260.1	gi|408405973|ref|YP_006863957.1|	-	0.08	12.9	0.1	0.083	12.9	0.1	1.1	1	0	0	1	1	1	0	C4-type	zinc-finger	of	DNA	polymerase	delta
SWIM	PF04434.12	gi|408405973|ref|YP_006863957.1|	-	0.09	12.2	1.3	0.15	11.5	0.9	1.3	1	0	0	1	1	1	0	SWIM	zinc	finger
Fer4_4	PF12800.2	gi|408405973|ref|YP_006863957.1|	-	0.79	10.2	4.0	8	7.0	0.3	2.2	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_2	PF12797.2	gi|408405973|ref|YP_006863957.1|	-	0.98	9.4	3.5	16	5.6	0.1	2.2	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4	PF00037.22	gi|408405973|ref|YP_006863957.1|	-	1.1	9.0	3.8	16	5.3	0.2	2.3	2	0	0	2	2	2	0	4Fe-4S	binding	domain
DUF106	PF01956.11	gi|408405974|ref|YP_006863958.1|	-	1.8	8.0	3.9	0.61	9.5	0.5	1.8	2	1	0	2	2	2	0	Integral	membrane	protein	DUF106
Aminotran_4	PF01063.14	gi|408405975|ref|YP_006863959.1|	-	1.5e-45	155.4	0.0	1.9e-45	155.1	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class	IV
DDE_Tnp_1	PF01609.16	gi|408405975|ref|YP_006863959.1|	-	0.13	11.8	0.0	0.16	11.4	0.0	1.2	1	0	0	1	1	1	0	Transposase	DDE	domain
AA_kinase	PF00696.23	gi|408405976|ref|YP_006863960.1|	-	3.5e-23	82.4	0.3	6.2e-23	81.5	0.2	1.4	1	0	0	1	1	1	1	Amino	acid	kinase	family
ACT	PF01842.20	gi|408405976|ref|YP_006863960.1|	-	0.015	14.8	0.4	0.037	13.5	0.3	1.7	1	0	0	1	1	1	0	ACT	domain
Band_7	PF01145.20	gi|408405977|ref|YP_006863961.1|	-	2.1e-33	115.7	2.1	3.3e-33	115.0	1.4	1.3	1	0	0	1	1	1	1	SPFH	domain	/	Band	7	family
Band_7_1	PF13421.1	gi|408405977|ref|YP_006863961.1|	-	7.9e-06	25.5	0.1	3.3e-05	23.5	0.0	2.0	2	0	0	2	2	2	1	SPFH	domain-Band	7	family
Phage_P2_GpE	PF06528.7	gi|408405977|ref|YP_006863961.1|	-	0.013	14.9	0.4	0.033	13.6	0.3	1.7	1	0	0	1	1	1	0	Phage	P2	GpE
RNase_E_G	PF10150.4	gi|408405977|ref|YP_006863961.1|	-	0.021	14.0	0.3	0.021	14.0	0.2	1.8	1	1	1	2	2	2	0	Ribonuclease	E/G	family
NfeD	PF01957.13	gi|408405978|ref|YP_006863962.1|	-	6.5e-21	74.9	4.4	6.5e-21	74.9	3.1	2.4	1	1	1	2	2	2	1	NfeD-like	C-terminal,	partner-binding
CLP_protease	PF00574.18	gi|408405978|ref|YP_006863962.1|	-	2.3e-06	27.4	0.2	3e-05	23.7	0.1	2.1	2	0	0	2	2	2	1	Clp	protease
SDH_sah	PF01972.11	gi|408405978|ref|YP_006863962.1|	-	0.0018	17.0	0.1	0.0028	16.4	0.0	1.2	1	0	0	1	1	1	1	Serine	dehydrogenase	proteinase
DUF1342	PF07072.6	gi|408405979|ref|YP_006863963.1|	-	0.015	14.9	0.8	0.02	14.5	0.5	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1342)
Kinesin-relat_1	PF12711.2	gi|408405979|ref|YP_006863963.1|	-	0.02	15.3	3.7	0.029	14.7	2.6	1.3	1	0	0	1	1	1	0	Kinesin	motor
Glu-tRNAGln	PF02686.10	gi|408405979|ref|YP_006863963.1|	-	0.024	14.4	3.3	0.066	13.0	1.2	2.0	1	1	1	2	2	2	0	Glu-tRNAGln	amidotransferase	C	subunit
DnaI_N	PF07319.6	gi|408405979|ref|YP_006863963.1|	-	0.034	14.3	1.2	0.046	13.9	0.8	1.3	1	0	0	1	1	1	0	Primosomal	protein	DnaI	N-terminus
Fmp27	PF10344.4	gi|408405979|ref|YP_006863963.1|	-	0.052	11.2	0.9	0.058	11.0	0.7	1.0	1	0	0	1	1	1	0	Mitochondrial	protein	from	FMP27
DUF3090	PF11290.3	gi|408405979|ref|YP_006863963.1|	-	0.1	12.0	0.1	3	7.2	0.1	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3090)
HMG_box_5	PF14887.1	gi|408405979|ref|YP_006863963.1|	-	0.12	12.1	0.0	0.16	11.7	0.0	1.3	1	0	0	1	1	1	0	HMG	(high	mobility	group)	box	5
Snf7	PF03357.16	gi|408405979|ref|YP_006863963.1|	-	0.6	9.4	5.8	1.7	8.0	3.5	2.0	1	1	1	2	2	2	0	Snf7
DUF2312	PF10073.4	gi|408405979|ref|YP_006863963.1|	-	3.3	7.1	6.0	5.9	6.3	0.8	2.6	2	1	1	3	3	3	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2312)
DUF389	PF04087.9	gi|408405981|ref|YP_006863965.1|	-	6.3e-29	100.6	19.8	6.3e-29	100.6	13.7	2.2	2	1	1	3	3	3	1	Domain	of	unknown	function	(DUF389)
PIN	PF01850.16	gi|408405982|ref|YP_006863966.1|	-	4.1e-17	62.6	0.4	4.5e-17	62.5	0.3	1.0	1	0	0	1	1	1	1	PIN	domain
adh_short_C2	PF13561.1	gi|408405982|ref|YP_006863966.1|	-	0.0016	18.2	0.0	0.0017	18.1	0.0	1.1	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
PIN_3	PF13470.1	gi|408405982|ref|YP_006863966.1|	-	0.024	15.3	0.1	0.031	14.9	0.1	1.2	1	0	0	1	1	1	0	PIN	domain
HemolysinCabind	PF00353.14	gi|408405983|ref|YP_006863967.1|	-	5e-20	69.8	79.6	0.00038	20.5	1.0	10.4	8	2	2	10	10	10	9	Hemolysin-type	calcium-binding	repeat	(2	copies)
Response_reg	PF00072.19	gi|408405984|ref|YP_006863968.1|	-	5.2e-18	65.0	0.1	6.3e-18	64.8	0.1	1.1	1	0	0	1	1	1	1	Response	regulator	receiver	domain
Glyco_trans_4_2	PF13477.1	gi|408405984|ref|YP_006863968.1|	-	0.083	12.7	0.0	0.12	12.2	0.0	1.3	1	0	0	1	1	1	0	Glycosyl	transferase	4-like
UPF0086	PF01868.11	gi|408405985|ref|YP_006863969.1|	-	0.0098	15.5	0.8	0.57	9.8	0.0	2.3	2	0	0	2	2	2	2	Domain	of	unknown	function	UPF0086
Usp	PF00582.21	gi|408405986|ref|YP_006863970.1|	-	4e-27	95.1	2.5	1.2e-26	93.5	1.7	1.7	1	1	0	1	1	1	1	Universal	stress	protein	family
DXP_reductoisom	PF02670.11	gi|408405986|ref|YP_006863970.1|	-	0.006	17.1	0.5	0.011	16.2	0.3	1.4	1	0	0	1	1	1	1	1-deoxy-D-xylulose	5-phosphate	reductoisomerase
Glu_synthase	PF01645.12	gi|408405986|ref|YP_006863970.1|	-	0.033	13.0	0.2	0.043	12.7	0.2	1.1	1	0	0	1	1	1	0	Conserved	region	in	glutamate	synthase
UPF0081	PF03652.10	gi|408405986|ref|YP_006863970.1|	-	0.044	13.8	0.8	1.1	9.3	0.3	2.5	2	1	0	2	2	2	0	Uncharacterised	protein	family	(UPF0081)
DUF1216	PF06746.6	gi|408405986|ref|YP_006863970.1|	-	0.057	13.2	1.3	0.086	12.6	0.9	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1216)
TerC	PF03741.11	gi|408405987|ref|YP_006863971.1|	-	4.7e-53	179.3	18.5	9.2e-53	178.4	10.6	2.6	3	0	0	3	3	3	1	Integral	membrane	protein	TerC	family
PHO4	PF01384.15	gi|408405987|ref|YP_006863971.1|	-	0.013	14.1	6.2	0.014	14.0	0.4	2.3	2	0	0	2	2	2	0	Phosphate	transporter	family
DUF4083	PF13314.1	gi|408405987|ref|YP_006863971.1|	-	0.018	14.8	0.2	0.18	11.6	0.0	2.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4083)
Glycophorin_A	PF01102.13	gi|408405987|ref|YP_006863971.1|	-	0.024	14.3	3.8	7.8	6.2	0.0	3.5	3	0	0	3	3	3	0	Glycophorin	A
DUF1049	PF06305.6	gi|408405987|ref|YP_006863971.1|	-	0.064	12.7	1.5	0.75	9.3	0.1	3.2	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1049)
IncA	PF04156.9	gi|408405987|ref|YP_006863971.1|	-	0.17	11.4	0.8	5.3	6.5	0.1	3.2	3	0	0	3	3	3	0	IncA	protein
Cloacin_immun	PF03513.9	gi|408405988|ref|YP_006863972.1|	-	0.017	15.1	0.0	0.035	14.1	0.0	1.6	1	1	0	1	1	1	0	Cloacin	immunity	protein
DUF387	PF04079.11	gi|408405988|ref|YP_006863972.1|	-	0.17	11.2	1.6	0.34	10.2	1.1	1.5	1	1	0	1	1	1	0	Putative	transcriptional	regulators	(Ypuh-like)
DUF2130	PF09903.4	gi|408405989|ref|YP_006863973.1|	-	1e-05	24.4	1.8	1.9e-05	23.5	1.3	1.4	1	1	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2130)
DUF2458	PF10454.4	gi|408405989|ref|YP_006863973.1|	-	0.025	14.4	0.8	0.036	13.9	0.6	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2458)
Laminin_I	PF06008.9	gi|408405989|ref|YP_006863973.1|	-	0.051	12.8	2.1	0.11	11.7	1.5	1.6	1	1	0	1	1	1	0	Laminin	Domain	I
SMC_N	PF02463.14	gi|408405991|ref|YP_006863975.1|	-	2.1e-22	79.4	6.0	3e-11	42.9	0.4	2.6	2	1	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.1	gi|408405991|ref|YP_006863975.1|	-	7.7e-14	52.4	30.9	1.8e-10	41.4	21.4	3.5	1	1	0	1	1	1	1	AAA	domain
AAA_21	PF13304.1	gi|408405991|ref|YP_006863975.1|	-	1.7e-13	51.1	0.4	7.5e-07	29.3	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
AAA_15	PF13175.1	gi|408405991|ref|YP_006863975.1|	-	1.1e-12	47.7	0.8	1.1e-05	24.6	0.0	3.1	3	0	0	3	3	3	2	AAA	ATPase	domain
SbcCD_C	PF13558.1	gi|408405991|ref|YP_006863975.1|	-	3.5e-10	39.6	0.0	1.1e-09	38.0	0.0	1.9	1	0	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
AAA_13	PF13166.1	gi|408405991|ref|YP_006863975.1|	-	2.8e-09	36.0	24.0	2.3e-07	29.7	3.4	4.0	2	1	1	3	3	3	2	AAA	domain
AAA_29	PF13555.1	gi|408405991|ref|YP_006863975.1|	-	2.4e-08	33.3	0.1	4.9e-08	32.3	0.1	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
ABC_tran	PF00005.22	gi|408405991|ref|YP_006863975.1|	-	5.3e-05	23.5	4.7	0.13	12.5	0.0	3.8	2	1	0	2	2	2	2	ABC	transporter
zf-C3HC4_3	PF13920.1	gi|408405991|ref|YP_006863975.1|	-	0.005	16.4	0.5	0.008	15.8	0.4	1.3	1	0	0	1	1	1	1	Zinc	finger,	C3HC4	type	(RING	finger)
AAA_33	PF13671.1	gi|408405991|ref|YP_006863975.1|	-	0.016	15.0	0.0	0.13	12.1	0.0	2.6	2	0	0	2	2	2	0	AAA	domain
DNA_ligase_ZBD	PF03119.11	gi|408405991|ref|YP_006863975.1|	-	0.018	14.6	0.1	0.054	13.1	0.1	1.8	1	0	0	1	1	1	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
DUF258	PF03193.11	gi|408405991|ref|YP_006863975.1|	-	0.048	12.8	0.1	0.11	11.6	0.0	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
AAA_16	PF13191.1	gi|408405991|ref|YP_006863975.1|	-	0.1	12.6	0.1	0.1	12.6	0.1	2.9	3	2	0	3	3	3	0	AAA	ATPase	domain
IncA	PF04156.9	gi|408405991|ref|YP_006863975.1|	-	2.8	7.4	33.8	0.5	9.9	1.9	3.7	1	1	2	3	3	3	0	IncA	protein
Metallophos_2	PF12850.2	gi|408405992|ref|YP_006863976.1|	-	6.1e-11	42.3	0.1	9.2e-11	41.8	0.0	1.3	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.23	gi|408405992|ref|YP_006863976.1|	-	4.9e-10	39.1	0.2	1.2e-09	37.9	0.1	1.6	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
WSS_VP	PF12175.3	gi|408405992|ref|YP_006863976.1|	-	0.17	10.9	0.0	0.28	10.2	0.0	1.2	1	0	0	1	1	1	0	White	spot	syndrome	virus	structural	envelope	protein	VP
RNA_pol_Rpc4	PF05132.9	gi|408405995|ref|YP_006863979.1|	-	0.12	12.4	0.0	0.19	11.7	0.0	1.4	1	0	0	1	1	1	0	RNA	polymerase	III	RPC4
A2M_N	PF01835.14	gi|408405996|ref|YP_006863980.1|	-	3e-08	33.8	0.0	5.5e-08	32.9	0.0	1.4	1	0	0	1	1	1	1	MG2	domain
EMP24_GP25L	PF01105.19	gi|408405996|ref|YP_006863980.1|	-	0.022	14.4	0.1	1.3	8.6	0.0	2.7	2	1	1	3	3	3	0	emp24/gp25L/p24	family/GOLD
FlgD_ig	PF13860.1	gi|408405996|ref|YP_006863980.1|	-	0.038	13.7	0.1	0.11	12.1	0.0	1.8	1	0	0	1	1	1	0	FlgD	Ig-like	domain
Big_3_4	PF13754.1	gi|408405996|ref|YP_006863980.1|	-	0.19	12.1	3.2	0.41	11.0	0.2	2.7	2	0	0	2	2	2	0	Bacterial	Ig-like	domain	(group	3)
DUF87	PF01935.12	gi|408405998|ref|YP_006863982.1|	-	4.3e-38	131.4	0.6	7.1e-38	130.7	0.4	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF87
AAA_10	PF12846.2	gi|408405998|ref|YP_006863982.1|	-	2.8e-18	66.4	0.3	1.6e-15	57.3	0.2	2.1	1	1	0	1	1	1	1	AAA-like	domain
DUF853	PF05872.7	gi|408405998|ref|YP_006863982.1|	-	3.9e-05	22.1	0.1	0.046	12.0	0.0	2.2	2	0	0	2	2	2	2	Bacterial	protein	of	unknown	function	(DUF853)
HAS-barrel	PF09378.5	gi|408405998|ref|YP_006863982.1|	-	0.0021	17.9	0.2	0.0056	16.5	0.1	1.8	1	0	0	1	1	1	1	HAS	barrel	domain
AAA_16	PF13191.1	gi|408405998|ref|YP_006863982.1|	-	0.0021	18.0	0.1	0.011	15.6	0.0	2.3	2	1	0	2	2	2	1	AAA	ATPase	domain
FtsK_SpoIIIE	PF01580.13	gi|408405998|ref|YP_006863982.1|	-	0.012	15.1	2.5	3	7.2	0.0	2.7	3	0	0	3	3	3	0	FtsK/SpoIIIE	family
TrwB_AAD_bind	PF10412.4	gi|408405998|ref|YP_006863982.1|	-	0.051	12.1	0.1	0.15	10.6	0.0	1.7	2	0	0	2	2	2	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
ABC_tran	PF00005.22	gi|408405998|ref|YP_006863982.1|	-	0.066	13.5	0.0	0.12	12.6	0.0	1.5	1	0	0	1	1	1	0	ABC	transporter
Zot	PF05707.7	gi|408405998|ref|YP_006863982.1|	-	0.069	12.6	0.0	0.12	11.7	0.0	1.4	1	0	0	1	1	1	0	Zonular	occludens	toxin	(Zot)
TPM	PF04536.9	gi|408405998|ref|YP_006863982.1|	-	0.085	12.7	2.2	0.29	10.9	0.6	2.3	2	0	0	2	2	2	0	TLP18.3,	Psb32	and	MOLO-1	founding	proteins	of	phosphatase
NurA	PF09376.5	gi|408405999|ref|YP_006863983.1|	-	1.4e-09	37.8	0.3	5.3e-08	32.6	0.2	2.5	1	1	0	1	1	1	1	NurA	domain
OrfB_Zn_ribbon	PF07282.6	gi|408406000|ref|YP_006863984.1|	-	3.5e-12	45.8	0.4	6e-12	45.0	0.3	1.4	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
ENTH	PF01417.15	gi|408406000|ref|YP_006863984.1|	-	0.06	13.2	0.5	2.2	8.1	0.1	2.5	2	0	0	2	2	2	0	ENTH	domain
Zn_Tnp_IS1595	PF12760.2	gi|408406000|ref|YP_006863984.1|	-	0.096	12.5	3.8	0.21	11.3	2.7	1.6	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
Uds1	PF15456.1	gi|408406000|ref|YP_006863984.1|	-	0.1	12.5	0.2	0.46	10.4	0.0	2.0	2	0	0	2	2	2	0	Up-regulated	During	Septation
DZR	PF12773.2	gi|408406000|ref|YP_006863984.1|	-	0.13	12.0	2.0	0.27	11.0	1.4	1.5	1	0	0	1	1	1	0	Double	zinc	ribbon
DAO	PF01266.19	gi|408406002|ref|YP_006863986.1|	-	2.5e-44	151.6	0.0	3.9e-44	151.0	0.0	1.3	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
Mqo	PF06039.10	gi|408406002|ref|YP_006863986.1|	-	2.7e-09	35.7	0.0	8.1e-07	27.5	0.0	2.3	2	1	0	2	2	2	2	Malate:quinone	oxidoreductase	(Mqo)
Pyr_redox_3	PF13738.1	gi|408406002|ref|YP_006863986.1|	-	4.3e-06	26.9	0.0	0.0003	20.8	0.0	2.3	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_2	PF07992.9	gi|408406002|ref|YP_006863986.1|	-	5.5e-06	26.4	0.0	0.00056	19.8	0.0	2.2	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.9	gi|408406002|ref|YP_006863986.1|	-	8.7e-05	21.1	0.2	0.0027	16.2	0.0	2.1	2	0	0	2	2	2	1	HI0933-like	protein
FAD_binding_3	PF01494.14	gi|408406002|ref|YP_006863986.1|	-	0.0001	21.4	0.1	0.086	11.8	0.0	2.4	2	0	0	2	2	2	2	FAD	binding	domain
NAD_binding_9	PF13454.1	gi|408406002|ref|YP_006863986.1|	-	0.00012	21.9	0.1	0.057	13.1	0.0	2.5	2	0	0	2	2	2	2	FAD-NAD(P)-binding
Lycopene_cycl	PF05834.7	gi|408406002|ref|YP_006863986.1|	-	0.00016	20.6	0.1	0.52	9.1	0.0	2.4	2	0	0	2	2	2	2	Lycopene	cyclase	protein
NAD_binding_8	PF13450.1	gi|408406002|ref|YP_006863986.1|	-	0.00054	19.9	0.0	0.0018	18.2	0.0	1.9	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox	PF00070.22	gi|408406002|ref|YP_006863986.1|	-	0.0051	17.1	0.0	0.065	13.6	0.0	2.4	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_Gly3P_dh_N	PF01210.18	gi|408406002|ref|YP_006863986.1|	-	0.033	13.9	0.0	0.062	13.0	0.0	1.4	1	0	0	1	1	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
Trp_halogenase	PF04820.9	gi|408406002|ref|YP_006863986.1|	-	0.075	11.6	0.2	2.5	6.6	0.1	2.1	2	0	0	2	2	2	0	Tryptophan	halogenase
3HCDH_N	PF02737.13	gi|408406002|ref|YP_006863986.1|	-	0.11	12.1	0.0	0.22	11.1	0.0	1.5	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
DUF1326	PF07040.6	gi|408406003|ref|YP_006863987.1|	-	7.1e-47	159.5	0.0	8.1e-47	159.3	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1326)
OrfB_IS605	PF01385.14	gi|408406005|ref|YP_006863989.1|	-	5e-25	88.2	5.7	7.4e-25	87.6	3.9	1.2	1	0	0	1	1	1	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.6	gi|408406005|ref|YP_006863989.1|	-	3.4e-17	61.8	2.0	6.2e-17	61.0	1.4	1.5	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
HTH_OrfB_IS605	PF12323.3	gi|408406005|ref|YP_006863989.1|	-	4.2e-12	45.1	0.2	1.2e-11	43.7	0.1	1.9	1	0	0	1	1	1	1	Helix-turn-helix	domain
DNA_pol_B	PF00136.16	gi|408406006|ref|YP_006863990.1|	-	5.5e-75	252.9	0.7	2.7e-49	168.2	0.0	2.7	2	0	0	2	2	2	2	DNA	polymerase	family	B
DNA_pol_B_exo1	PF03104.14	gi|408406006|ref|YP_006863990.1|	-	1.1e-31	109.8	3.4	4.7e-31	107.8	0.1	2.6	2	0	0	2	2	2	1	DNA	polymerase	family	B,	exonuclease	domain
LAGLIDADG_3	PF14528.1	gi|408406006|ref|YP_006863990.1|	-	4.9e-13	49.1	0.1	0.0013	18.9	0.0	4.9	4	0	0	4	4	4	3	LAGLIDADG-like	domain
Hom_end	PF05204.9	gi|408406006|ref|YP_006863990.1|	-	7.4e-12	45.1	0.1	2.4e-07	30.6	0.1	2.7	2	0	0	2	2	2	2	Homing	endonuclease
DNA_pol_B_exo2	PF10108.4	gi|408406006|ref|YP_006863990.1|	-	4.8e-05	23.0	0.0	0.00013	21.5	0.0	1.7	2	0	0	2	2	2	1	Predicted	3'-5'	exonuclease	related	to	the	exonuclease	domain	of	PolB
RNase_H_2	PF13482.1	gi|408406006|ref|YP_006863990.1|	-	5.2e-05	23.1	0.5	0.002	17.9	0.0	3.0	3	0	0	3	3	3	1	RNase_H	superfamily
DNA_pol_A_exo1	PF01612.15	gi|408406006|ref|YP_006863990.1|	-	0.017	14.6	0.0	0.057	12.9	0.0	2.0	1	0	0	1	1	1	0	3'-5'	exonuclease
Radical_SAM	PF04055.16	gi|408406007|ref|YP_006863991.1|	-	2e-13	50.8	0.2	4.7e-13	49.6	0.0	1.7	2	0	0	2	2	2	1	Radical	SAM	superfamily
Arginase	PF00491.16	gi|408406008|ref|YP_006863992.1|	-	5.1e-59	199.8	0.0	5.9e-59	199.6	0.0	1.0	1	0	0	1	1	1	1	Arginase	family
Pox_VP8_L4R	PF04498.7	gi|408406008|ref|YP_006863992.1|	-	0.011	15.1	0.0	0.017	14.4	0.0	1.3	1	0	0	1	1	1	0	Poxvirus	nucleic	acid	binding	protein	VP8/L4R
UPF0489	PF12640.2	gi|408406008|ref|YP_006863992.1|	-	0.076	13.2	0.0	0.12	12.5	0.0	1.3	1	0	0	1	1	1	0	UPF0489	domain
Neur_chan_memb	PF02932.11	gi|408406009|ref|YP_006863993.1|	-	1.1e-06	28.6	3.6	1.4e-06	28.3	2.5	1.0	1	0	0	1	1	1	1	Neurotransmitter-gated	ion-channel	transmembrane	region
60KD_IMP	PF02096.15	gi|408406009|ref|YP_006863993.1|	-	0.76	9.4	5.9	1.2	8.7	4.1	1.4	1	1	0	1	1	1	0	60Kd	inner	membrane	protein
DUF1345	PF07077.6	gi|408406009|ref|YP_006863993.1|	-	1.9	7.9	4.9	0.39	10.2	0.4	1.9	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1345)
FUSC_2	PF13515.1	gi|408406009|ref|YP_006863993.1|	-	3.9	7.4	7.6	28	4.6	5.3	2.0	1	1	0	1	1	1	0	Fusaric	acid	resistance	protein-like
DDE_Tnp_1	PF01609.16	gi|408406010|ref|YP_006863994.1|	-	0.0042	16.6	0.2	0.0078	15.7	0.1	1.5	1	1	0	1	1	1	1	Transposase	DDE	domain
DUF1815	PF08844.5	gi|408406010|ref|YP_006863994.1|	-	0.018	14.6	0.2	0.049	13.2	0.0	1.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1815)
Neur_chan_LBD	PF02931.18	gi|408406011|ref|YP_006863995.1|	-	0.026	13.6	0.0	0.061	12.4	0.0	1.7	2	0	0	2	2	2	0	Neurotransmitter-gated	ion-channel	ligand	binding	domain
tRNA-Thr_ED	PF08915.6	gi|408406012|ref|YP_006863996.1|	-	1.1e-44	151.7	0.0	2.4e-44	150.6	0.0	1.6	1	0	0	1	1	1	1	Archaea-specific	editing	domain	of	threonyl-tRNA	synthetase
HGTP_anticodon	PF03129.15	gi|408406012|ref|YP_006863996.1|	-	5.6e-28	96.7	2.6	1.4e-27	95.4	1.8	1.7	1	0	0	1	1	1	1	Anticodon	binding	domain
tRNA-synt_2b	PF00587.20	gi|408406012|ref|YP_006863996.1|	-	1.2e-24	86.7	1.5	2.3e-24	85.9	1.0	1.4	1	0	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
UPF0270	PF06794.7	gi|408406012|ref|YP_006863996.1|	-	0.034	13.8	0.5	23	4.8	0.0	3.6	3	0	0	3	3	3	0	Uncharacterised	protein	family	(UPF0270)
DUF4355	PF14265.1	gi|408406012|ref|YP_006863996.1|	-	0.16	11.9	5.0	4.3	7.2	0.0	3.5	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4355)
HTH_45	PF14947.1	gi|408406014|ref|YP_006863998.1|	-	5.3e-15	54.9	0.3	1.2e-14	53.8	0.2	1.5	1	1	0	1	1	1	1	Winged	helix-turn-helix
TrmB	PF01978.14	gi|408406014|ref|YP_006863998.1|	-	0.02	14.5	0.1	0.031	13.9	0.0	1.3	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
DUF4364	PF14277.1	gi|408406014|ref|YP_006863998.1|	-	0.038	13.6	0.1	0.052	13.1	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
Mrr_N	PF14338.1	gi|408406014|ref|YP_006863998.1|	-	0.045	13.8	0.0	0.064	13.3	0.0	1.3	1	0	0	1	1	1	0	Mrr	N-terminal	domain
RPA_C	PF08784.6	gi|408406014|ref|YP_006863998.1|	-	0.049	14.0	0.0	0.063	13.7	0.0	1.2	1	0	0	1	1	1	0	Replication	protein	A	C	terminal
Pex16	PF08610.5	gi|408406014|ref|YP_006863998.1|	-	0.083	11.8	0.0	0.097	11.6	0.0	1.0	1	0	0	1	1	1	0	Peroxisomal	membrane	protein	(Pex16)
MarR_2	PF12802.2	gi|408406014|ref|YP_006863998.1|	-	0.15	11.7	0.0	0.21	11.2	0.0	1.4	1	1	0	1	1	1	0	MarR	family
zinc_ribbon_5	PF13719.1	gi|408406016|ref|YP_006864000.1|	-	0.0095	15.5	4.7	0.21	11.2	3.3	2.1	1	1	0	1	1	1	1	zinc-ribbon	domain
zinc_ribbon_4	PF13717.1	gi|408406016|ref|YP_006864000.1|	-	0.014	15.0	4.9	0.39	10.4	3.4	2.1	1	1	0	1	1	1	0	zinc-ribbon	domain
zinc_ribbon_6	PF14599.1	gi|408406016|ref|YP_006864000.1|	-	0.025	14.3	0.7	0.032	14.0	0.5	1.2	1	0	0	1	1	1	0	Zinc-ribbon
Ribosomal_S27e	PF01667.12	gi|408406016|ref|YP_006864000.1|	-	0.058	12.9	3.6	0.14	11.6	2.5	1.6	1	1	0	1	1	1	0	Ribosomal	protein	S27
IBR	PF01485.16	gi|408406016|ref|YP_006864000.1|	-	0.077	12.8	1.1	0.11	12.3	0.7	1.2	1	0	0	1	1	1	0	IBR	domain
DUF329	PF03884.9	gi|408406016|ref|YP_006864000.1|	-	0.085	12.4	1.1	0.52	9.9	0.1	2.0	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF329)
HypA	PF01155.14	gi|408406016|ref|YP_006864000.1|	-	0.14	11.8	0.2	0.15	11.7	0.2	1.1	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
Lar_restr_allev	PF14354.1	gi|408406016|ref|YP_006864000.1|	-	0.16	12.2	3.0	1.7	9.0	2.0	2.0	1	1	0	1	1	1	0	Restriction	alleviation	protein	Lar
Sgf11	PF08209.6	gi|408406016|ref|YP_006864000.1|	-	0.26	10.6	1.9	8.8	5.7	0.0	2.2	2	0	0	2	2	2	0	Sgf11	(transcriptional	regulation	protein)
Zn_ribbon_recom	PF13408.1	gi|408406016|ref|YP_006864000.1|	-	0.52	10.5	2.4	5.2	7.4	0.2	2.1	2	0	0	2	2	2	0	Recombinase	zinc	beta	ribbon	domain
zf-ribbon_3	PF13248.1	gi|408406016|ref|YP_006864000.1|	-	0.75	9.0	5.5	7.1	5.9	0.4	2.2	1	1	1	2	2	2	0	zinc-ribbon	domain
TFIIS_C	PF01096.13	gi|408406016|ref|YP_006864000.1|	-	1	9.0	3.3	5.1	6.8	0.2	2.1	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
Laminin_EGF	PF00053.19	gi|408406017|ref|YP_006864001.1|	-	0.019	14.8	2.0	0.027	14.3	1.4	1.2	1	0	0	1	1	1	0	Laminin	EGF-like	(Domains	III	and	V)
zf-NADH-PPase	PF09297.6	gi|408406017|ref|YP_006864001.1|	-	0.061	12.8	2.2	2.1	7.8	0.4	2.2	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
Peptidase_U4	PF03419.8	gi|408406017|ref|YP_006864001.1|	-	0.17	10.9	0.8	0.21	10.6	0.5	1.1	1	0	0	1	1	1	0	Sporulation	factor	SpoIIGA
FtsX	PF02687.16	gi|408406017|ref|YP_006864001.1|	-	0.18	11.6	8.8	0.11	12.3	1.9	2.0	1	1	1	2	2	2	0	FtsX-like	permease	family
PrgI	PF12666.2	gi|408406017|ref|YP_006864001.1|	-	0.23	11.6	2.0	0.32	11.1	1.4	1.2	1	0	0	1	1	1	0	PrgI	family	protein
zf-ribbon_3	PF13248.1	gi|408406017|ref|YP_006864001.1|	-	0.27	10.4	3.9	0.9	8.8	2.7	1.8	1	1	0	1	1	1	0	zinc-ribbon	domain
DNA_RNApol_7kD	PF03604.8	gi|408406017|ref|YP_006864001.1|	-	2.1	7.8	5.0	32	4.0	3.4	2.1	1	1	0	1	1	1	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
SKG6	PF08693.5	gi|408406017|ref|YP_006864001.1|	-	9.7	5.5	7.1	10	5.5	0.6	2.2	2	0	0	2	2	2	0	Transmembrane	alpha-helix	domain
Iron_traffic	PF04362.9	gi|408406018|ref|YP_006864002.1|	-	3.9e-09	35.8	0.2	5.1e-09	35.4	0.1	1.4	1	1	0	1	1	1	1	Bacterial	Fe(2+)	trafficking
YhfH	PF14149.1	gi|408406018|ref|YP_006864002.1|	-	0.005	16.6	0.9	0.005	16.6	0.7	1.9	2	0	0	2	2	2	1	YhfH-like	protein
OrfB_Zn_ribbon	PF07282.6	gi|408406018|ref|YP_006864002.1|	-	0.012	15.3	0.1	0.016	14.8	0.0	1.3	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
CM_1	PF07736.6	gi|408406018|ref|YP_006864002.1|	-	0.036	14.1	0.0	0.044	13.8	0.0	1.1	1	0	0	1	1	1	0	Chorismate	mutase	type	I
Zn-ribbon_8	PF09723.5	gi|408406018|ref|YP_006864002.1|	-	0.074	13.0	0.3	0.13	12.2	0.2	1.4	1	0	0	1	1	1	0	Zinc	ribbon	domain
DUF4182	PF13790.1	gi|408406018|ref|YP_006864002.1|	-	0.18	11.6	0.8	0.28	10.9	0.5	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4182)
Adenylsucc_synt	PF00709.16	gi|408406020|ref|YP_006864004.1|	-	9.7e-84	281.4	0.2	4.4e-40	137.6	0.0	3.0	1	1	2	3	3	3	3	Adenylosuccinate	synthetase
ALIX_LYPXL_bnd	PF13949.1	gi|408406021|ref|YP_006864005.1|	-	0.015	14.2	0.1	0.015	14.2	0.0	1.1	1	0	0	1	1	1	0	ALIX	V-shaped	domain	binding	to	HIV
OMPdecase	PF00215.19	gi|408406023|ref|YP_006864007.1|	-	1.9e-29	102.7	0.1	2.4e-29	102.3	0.1	1.1	1	0	0	1	1	1	1	Orotidine	5'-phosphate	decarboxylase	/	HUMPS	family
His_biosynth	PF00977.16	gi|408406023|ref|YP_006864007.1|	-	0.015	14.6	0.2	2.7	7.1	0.1	2.6	1	1	0	2	2	2	0	Histidine	biosynthesis	protein
Peripla_BP_4	PF13407.1	gi|408406023|ref|YP_006864007.1|	-	0.019	14.3	2.6	0.97	8.7	0.1	2.9	3	0	0	3	3	3	0	Periplasmic	binding	protein	domain
FMN_dh	PF01070.13	gi|408406023|ref|YP_006864007.1|	-	0.022	13.5	3.0	0.073	11.9	2.1	2.1	1	1	0	1	1	1	0	FMN-dependent	dehydrogenase
PcrB	PF01884.12	gi|408406023|ref|YP_006864007.1|	-	0.062	12.5	3.4	0.54	9.4	1.2	2.6	1	1	3	4	4	4	0	PcrB	family
ThiG	PF05690.9	gi|408406023|ref|YP_006864007.1|	-	0.31	10.0	2.1	0.39	9.7	0.2	1.8	2	0	0	2	2	2	0	Thiazole	biosynthesis	protein	ThiG
NUDIX	PF00293.23	gi|408406024|ref|YP_006864008.1|	-	8.1e-17	61.1	0.1	9.9e-17	60.8	0.0	1.1	1	0	0	1	1	1	1	NUDIX	domain
Imm45	PF15603.1	gi|408406024|ref|YP_006864008.1|	-	0.014	15.4	0.0	0.046	13.8	0.0	1.9	2	1	0	2	2	2	0	Immunity	protein	45
NUDIX_4	PF14815.1	gi|408406024|ref|YP_006864008.1|	-	0.11	11.9	0.0	0.15	11.5	0.0	1.3	1	1	0	1	1	1	0	NUDIX	domain
DUF373	PF04123.8	gi|408406025|ref|YP_006864009.1|	-	1.1e-99	333.7	9.7	1.3e-99	333.4	6.7	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF373)
Bac_export_2	PF01312.14	gi|408406025|ref|YP_006864009.1|	-	0.98	8.2	3.4	1.7	7.4	2.4	1.4	1	1	0	1	1	1	0	FlhB	HrpN	YscU	SpaS	Family
FtsJ	PF01728.14	gi|408406026|ref|YP_006864010.1|	-	1.6e-54	184.6	0.0	1.8e-54	184.4	0.0	1.0	1	0	0	1	1	1	1	FtsJ-like	methyltransferase
Methyltransf_31	PF13847.1	gi|408406026|ref|YP_006864010.1|	-	9.3e-06	25.2	0.0	0.00024	20.7	0.0	2.5	2	1	0	2	2	2	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|408406026|ref|YP_006864010.1|	-	9.6e-05	22.1	0.0	0.00042	20.0	0.0	2.2	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|408406026|ref|YP_006864010.1|	-	0.0048	16.9	0.0	0.011	15.7	0.0	1.7	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|408406026|ref|YP_006864010.1|	-	0.0062	17.0	0.0	0.016	15.7	0.0	1.9	1	1	0	1	1	1	1	Methyltransferase	domain
PCMT	PF01135.14	gi|408406026|ref|YP_006864010.1|	-	0.017	14.6	0.0	0.025	14.0	0.0	1.2	1	0	0	1	1	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
MetW	PF07021.7	gi|408406026|ref|YP_006864010.1|	-	0.034	13.5	0.0	0.06	12.7	0.0	1.4	1	0	0	1	1	1	0	Methionine	biosynthesis	protein	MetW
Ubie_methyltran	PF01209.13	gi|408406026|ref|YP_006864010.1|	-	0.043	12.9	0.0	0.082	12.0	0.0	1.4	1	0	0	1	1	1	0	ubiE/COQ5	methyltransferase	family
Methyltrans_Mon	PF14314.1	gi|408406026|ref|YP_006864010.1|	-	0.066	11.0	0.0	0.079	10.7	0.0	1.1	1	0	0	1	1	1	0	Virus-capping	methyltransferase
NSP13	PF06460.7	gi|408406026|ref|YP_006864010.1|	-	0.14	10.9	0.0	0.25	10.1	0.0	1.3	1	0	0	1	1	1	0	Coronavirus	NSP13
RNA_pol_Rpc34	PF05158.7	gi|408406027|ref|YP_006864011.1|	-	2.5e-06	26.8	1.3	0.00013	21.2	0.2	2.0	1	1	1	2	2	2	2	RNA	polymerase	Rpc34	subunit
MarR	PF01047.17	gi|408406027|ref|YP_006864011.1|	-	0.0071	16.0	0.3	0.012	15.3	0.2	1.4	1	0	0	1	1	1	1	MarR	family
B-block_TFIIIC	PF04182.7	gi|408406027|ref|YP_006864011.1|	-	0.011	15.5	0.1	0.013	15.3	0.0	1.3	1	1	0	1	1	1	0	B-block	binding	subunit	of	TFIIIC
MarR_2	PF12802.2	gi|408406027|ref|YP_006864011.1|	-	0.077	12.6	0.2	0.11	12.1	0.2	1.2	1	0	0	1	1	1	0	MarR	family
HpaB_N	PF11794.3	gi|408406028|ref|YP_006864012.1|	-	1.2e-87	293.6	0.0	4e-87	291.9	0.0	1.7	2	0	0	2	2	2	1	4-hydroxyphenylacetate	3-hydroxylase	N	terminal
HpaB	PF03241.8	gi|408406028|ref|YP_006864012.1|	-	2.7e-72	241.8	0.7	4e-72	241.3	0.5	1.2	1	0	0	1	1	1	1	4-hydroxyphenylacetate	3-hydroxylase	C	terminal
Peptidase_M10	PF00413.19	gi|408406029|ref|YP_006864013.1|	-	0.066	12.9	0.1	0.14	11.9	0.1	1.7	1	1	0	1	1	1	0	Matrixin
Pribosyltran	PF00156.22	gi|408406030|ref|YP_006864014.1|	-	4.5e-18	65.1	0.8	6.2e-18	64.7	0.5	1.2	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
UPRTase	PF14681.1	gi|408406030|ref|YP_006864014.1|	-	0.00018	20.7	0.0	0.00024	20.4	0.0	1.1	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
PNP_UDP_1	PF01048.15	gi|408406031|ref|YP_006864015.1|	-	3.2e-45	153.9	0.0	3.6e-45	153.7	0.0	1.0	1	0	0	1	1	1	1	Phosphorylase	superfamily
TrmB	PF01978.14	gi|408406034|ref|YP_006864018.1|	-	2.5e-06	27.1	0.0	3.7e-06	26.5	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Ferritin	PF00210.19	gi|408406035|ref|YP_006864019.1|	-	3.3e-21	75.5	0.3	3.9e-21	75.2	0.2	1.0	1	0	0	1	1	1	1	Ferritin-like	domain
Rubrerythrin	PF02915.12	gi|408406035|ref|YP_006864019.1|	-	0.0001	22.6	0.1	0.00013	22.2	0.1	1.3	1	0	0	1	1	1	1	Rubrerythrin
PspA_IM30	PF04012.7	gi|408406035|ref|YP_006864019.1|	-	0.03	13.6	0.6	0.03	13.6	0.4	1.5	2	0	0	2	2	2	0	PspA/IM30	family
PfkB	PF00294.19	gi|408406036|ref|YP_006864020.1|	-	5.3e-26	91.4	0.1	1e-25	90.5	0.1	1.3	1	1	0	1	1	1	1	pfkB	family	carbohydrate	kinase
Flavoprotein	PF02441.14	gi|408406037|ref|YP_006864021.1|	-	4e-28	97.6	0.1	5.5e-28	97.2	0.0	1.2	1	0	0	1	1	1	1	Flavoprotein
GvpH	PF05455.6	gi|408406038|ref|YP_006864022.1|	-	0.0061	16.2	0.1	0.0067	16.0	0.1	1.1	1	0	0	1	1	1	1	GvpH
HSP20	PF00011.16	gi|408406038|ref|YP_006864022.1|	-	0.068	13.0	0.0	7.9	6.4	0.0	2.3	1	1	1	2	2	2	0	Hsp20/alpha	crystallin	family
KH_1	PF00013.24	gi|408406039|ref|YP_006864023.1|	-	5.1e-18	64.4	9.5	9.7e-12	44.3	1.7	2.2	2	0	0	2	2	2	2	KH	domain
KH_3	PF13014.1	gi|408406039|ref|YP_006864023.1|	-	4e-12	45.5	8.8	4.5e-07	29.3	1.3	2.4	2	0	0	2	2	2	2	KH	domain
KH_2	PF07650.12	gi|408406039|ref|YP_006864023.1|	-	0.00021	20.7	6.1	0.022	14.3	0.4	2.3	2	0	0	2	2	2	2	KH	domain
KH_4	PF13083.1	gi|408406039|ref|YP_006864023.1|	-	9.3	5.9	7.4	6.2	6.5	0.9	2.7	2	1	0	2	2	2	0	KH	domain
RIO1	PF01163.17	gi|408406040|ref|YP_006864024.1|	-	3.1e-57	192.9	0.0	4.2e-57	192.5	0.0	1.2	1	0	0	1	1	1	1	RIO1	family
Pkinase	PF00069.20	gi|408406040|ref|YP_006864024.1|	-	6.8e-05	22.1	0.0	0.00014	21.1	0.0	1.5	1	1	0	1	1	1	1	Protein	kinase	domain
APH	PF01636.18	gi|408406040|ref|YP_006864024.1|	-	0.00017	21.4	0.3	0.53	9.9	0.0	3.3	2	1	1	3	3	3	2	Phosphotransferase	enzyme	family
Kdo	PF06293.9	gi|408406040|ref|YP_006864024.1|	-	0.0019	17.2	0.0	0.17	10.8	0.0	2.3	2	0	0	2	2	2	2	Lipopolysaccharide	kinase	(Kdo/WaaP)	family
Methyltransf_17	PF12692.2	gi|408406040|ref|YP_006864024.1|	-	0.082	12.5	0.0	0.18	11.5	0.0	1.5	1	1	0	1	1	1	0	S-adenosyl-L-methionine	methyltransferase
DUF424	PF04242.8	gi|408406041|ref|YP_006864025.1|	-	1.9e-17	63.1	0.2	2e-17	62.9	0.1	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF424)
DUF1874	PF08960.5	gi|408406041|ref|YP_006864025.1|	-	0.02	14.6	0.2	0.026	14.2	0.1	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1874)
DUF1257	PF06868.6	gi|408406041|ref|YP_006864025.1|	-	0.023	14.5	0.3	0.035	13.9	0.2	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1257)
NAD_binding_1	PF00175.16	gi|408406042|ref|YP_006864026.1|	-	5.2e-15	55.9	0.0	9e-15	55.1	0.0	1.4	1	0	0	1	1	1	1	Oxidoreductase	NAD-binding	domain
FAD_binding_6	PF00970.19	gi|408406042|ref|YP_006864026.1|	-	5.8e-14	52.0	0.0	1.1e-13	51.1	0.0	1.4	1	0	0	1	1	1	1	Oxidoreductase	FAD-binding	domain
NAD_binding_6	PF08030.7	gi|408406042|ref|YP_006864026.1|	-	0.02	14.7	0.0	0.033	14.1	0.0	1.4	1	0	0	1	1	1	0	Ferric	reductase	NAD	binding	domain
FadA	PF09403.5	gi|408406043|ref|YP_006864027.1|	-	0.0027	17.6	0.1	0.0038	17.2	0.1	1.1	1	0	0	1	1	1	1	Adhesion	protein	FadA
TRM	PF02005.11	gi|408406044|ref|YP_006864028.1|	-	3.2e-91	306.0	0.0	3.6e-91	305.8	0.0	1.0	1	0	0	1	1	1	1	N2,N2-dimethylguanosine	tRNA	methyltransferase
Met_10	PF02475.11	gi|408406044|ref|YP_006864028.1|	-	0.00025	20.6	0.0	0.0004	20.0	0.0	1.3	1	0	0	1	1	1	1	Met-10+	like-protein
MarR_2	PF12802.2	gi|408406044|ref|YP_006864028.1|	-	0.00041	19.9	0.0	0.00098	18.7	0.0	1.6	1	0	0	1	1	1	1	MarR	family
PrmA	PF06325.8	gi|408406044|ref|YP_006864028.1|	-	0.00062	18.9	0.0	0.001	18.2	0.0	1.3	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_31	PF13847.1	gi|408406044|ref|YP_006864028.1|	-	0.00069	19.2	0.0	0.0013	18.3	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|408406044|ref|YP_006864028.1|	-	0.0013	18.7	0.0	0.0026	17.7	0.0	1.7	1	1	0	1	1	1	1	Methyltransferase	domain
Rrf2	PF02082.15	gi|408406044|ref|YP_006864028.1|	-	0.0053	16.8	0.0	0.016	15.3	0.0	1.8	1	0	0	1	1	1	1	Transcriptional	regulator
MTS	PF05175.9	gi|408406044|ref|YP_006864028.1|	-	0.0091	15.3	0.0	0.018	14.4	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	small	domain
TrmB	PF01978.14	gi|408406044|ref|YP_006864028.1|	-	0.02	14.5	0.0	0.14	11.8	0.0	2.4	3	0	0	3	3	3	0	Sugar-specific	transcriptional	regulator	TrmB
HypA	PF01155.14	gi|408406044|ref|YP_006864028.1|	-	0.03	14.0	0.6	0.09	12.4	0.1	1.9	2	0	0	2	2	2	0	Hydrogenase	expression/synthesis	hypA	family
TF_Zn_Ribbon	PF08271.7	gi|408406044|ref|YP_006864028.1|	-	0.044	13.1	0.9	0.084	12.2	0.6	1.5	1	0	0	1	1	1	0	TFIIB	zinc-binding
DUF1451	PF07295.6	gi|408406044|ref|YP_006864028.1|	-	0.056	13.2	0.7	0.11	12.2	0.5	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1451)
FYVE	PF01363.16	gi|408406044|ref|YP_006864028.1|	-	0.063	13.1	0.2	0.12	12.3	0.1	1.4	1	0	0	1	1	1	0	FYVE	zinc	finger
Acetyltransf_4	PF13420.1	gi|408406044|ref|YP_006864028.1|	-	0.073	13.0	0.0	0.14	12.1	0.0	1.3	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Fe_dep_repress	PF01325.14	gi|408406044|ref|YP_006864028.1|	-	0.1	12.5	0.0	0.21	11.5	0.0	1.5	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
zf-ribbon_3	PF13248.1	gi|408406044|ref|YP_006864028.1|	-	0.14	11.4	1.0	0.27	10.5	0.7	1.5	1	0	0	1	1	1	0	zinc-ribbon	domain
RNase_HII	PF01351.13	gi|408406045|ref|YP_006864029.1|	-	1.3e-41	142.4	0.1	1.6e-41	142.1	0.1	1.0	1	0	0	1	1	1	1	Ribonuclease	HII
Fibrillarin	PF01269.12	gi|408406046|ref|YP_006864030.1|	-	1.6e-87	292.2	0.0	1.8e-87	292.0	0.0	1.0	1	0	0	1	1	1	1	Fibrillarin
PCMT	PF01135.14	gi|408406046|ref|YP_006864030.1|	-	0.00014	21.4	0.1	0.00019	21.0	0.1	1.2	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
GCD14	PF08704.5	gi|408406046|ref|YP_006864030.1|	-	0.00032	20.3	0.0	0.00047	19.7	0.0	1.2	1	0	0	1	1	1	1	tRNA	methyltransferase	complex	GCD14	subunit
FtsJ	PF01728.14	gi|408406046|ref|YP_006864030.1|	-	0.021	14.8	0.0	0.028	14.4	0.0	1.2	1	0	0	1	1	1	0	FtsJ-like	methyltransferase
Methyltransf_26	PF13659.1	gi|408406046|ref|YP_006864030.1|	-	0.04	13.9	0.0	0.11	12.4	0.0	1.8	1	1	0	1	1	1	0	Methyltransferase	domain
Nop	PF01798.13	gi|408406047|ref|YP_006864031.1|	-	1.2e-48	164.2	2.7	2.3e-48	163.3	0.8	1.9	2	0	0	2	2	2	1	Putative	snoRNA	binding	domain
NOSIC	PF08060.8	gi|408406047|ref|YP_006864031.1|	-	1.7e-20	72.5	0.0	6.8e-20	70.6	0.0	2.0	2	0	0	2	2	2	1	NOSIC	(NUC001)	domain
EcoEI_R_C	PF08463.5	gi|408406047|ref|YP_006864031.1|	-	0.011	15.5	0.3	0.049	13.4	0.2	2.3	1	1	0	1	1	1	0	EcoEI	R	protein	C-terminal
TAF1D	PF15333.1	gi|408406047|ref|YP_006864031.1|	-	0.014	15.2	2.3	0.023	14.4	1.6	1.3	1	0	0	1	1	1	0	TATA	box-binding	protein-associated	factor	1D
Peptidase_S24	PF00717.18	gi|408406049|ref|YP_006864033.1|	-	8.6e-09	34.9	2.7	1.8e-08	33.9	1.1	2.0	1	1	1	2	2	2	1	Peptidase	S24-like
Syndecan	PF01034.15	gi|408406049|ref|YP_006864033.1|	-	0.44	10.2	0.0	0.44	10.2	0.0	1.7	2	0	0	2	2	2	0	Syndecan	domain
UPF0047	PF01894.12	gi|408406050|ref|YP_006864034.1|	-	6.2e-38	129.2	0.0	7.2e-38	129.0	0.0	1.0	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0047
TBP	PF00352.16	gi|408406051|ref|YP_006864035.1|	-	1.8e-60	200.2	0.1	2.5e-29	100.4	0.1	2.0	2	0	0	2	2	2	2	Transcription	factor	TFIID	(or	TATA-binding	protein,	TBP)
DUF3378	PF11858.3	gi|408406051|ref|YP_006864035.1|	-	4.3e-06	26.7	0.0	0.0055	16.7	0.0	2.3	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF3378)
Pribosyltran	PF00156.22	gi|408406052|ref|YP_006864036.1|	-	1.7e-14	53.6	2.5	9.4e-14	51.2	1.7	2.1	1	1	0	1	1	1	1	Phosphoribosyl	transferase	domain
PRTase_2	PF15609.1	gi|408406052|ref|YP_006864036.1|	-	0.0028	16.9	0.1	0.0045	16.3	0.1	1.3	1	0	0	1	1	1	1	Phosphoribosyl	transferase
DUF674	PF05056.7	gi|408406052|ref|YP_006864036.1|	-	0.0032	16.1	0.0	0.0044	15.7	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF674)
UPRTase	PF14681.1	gi|408406052|ref|YP_006864036.1|	-	0.0057	15.8	0.1	0.0079	15.4	0.1	1.2	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
Peptidase_M50	PF02163.17	gi|408406054|ref|YP_006864038.1|	-	6.3e-14	51.3	9.7	2.9e-12	45.9	5.4	2.6	2	1	0	2	2	2	1	Peptidase	family	M50
Acetyltransf_1	PF00583.19	gi|408406055|ref|YP_006864039.1|	-	9e-20	70.5	0.1	1.5e-19	69.7	0.1	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_7	PF13508.1	gi|408406055|ref|YP_006864039.1|	-	1.5e-11	44.2	0.2	2.7e-11	43.4	0.1	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.5	gi|408406055|ref|YP_006864039.1|	-	1.7e-11	43.6	0.3	5e-11	42.2	0.1	1.8	2	1	0	2	2	2	1	FR47-like	protein
Acetyltransf_10	PF13673.1	gi|408406055|ref|YP_006864039.1|	-	4.5e-09	36.4	0.0	6.6e-09	35.9	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.1	gi|408406055|ref|YP_006864039.1|	-	1.4e-06	28.1	0.0	3.6e-06	26.8	0.0	1.7	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.1	gi|408406055|ref|YP_006864039.1|	-	8.7e-06	25.7	0.1	1.3e-05	25.2	0.1	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_8	PF13523.1	gi|408406055|ref|YP_006864039.1|	-	3e-05	23.9	0.0	6.6e-05	22.8	0.0	1.6	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_3	PF13302.1	gi|408406055|ref|YP_006864039.1|	-	0.0002	21.5	0.1	0.00038	20.6	0.1	1.5	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
GNAT_acetyltran	PF12746.2	gi|408406055|ref|YP_006864039.1|	-	0.022	13.6	0.0	0.035	12.9	0.0	1.5	1	1	0	1	1	1	0	GNAT	acetyltransferase
DUF4225	PF13988.1	gi|408406055|ref|YP_006864039.1|	-	0.083	12.3	0.0	0.12	11.8	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4225)
Met_10	PF02475.11	gi|408406056|ref|YP_006864040.1|	-	1.4e-65	220.6	0.8	1.8e-65	220.3	0.5	1.1	1	0	0	1	1	1	1	Met-10+	like-protein
Methyltransf_15	PF09445.5	gi|408406056|ref|YP_006864040.1|	-	3.5e-07	29.9	0.0	6.3e-07	29.0	0.0	1.4	1	0	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
Methyltransf_26	PF13659.1	gi|408406056|ref|YP_006864040.1|	-	1.3e-06	28.4	0.0	3e-06	27.2	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|408406056|ref|YP_006864040.1|	-	2.6e-05	24.7	0.1	5e-05	23.8	0.1	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.9	gi|408406056|ref|YP_006864040.1|	-	6.3e-05	22.4	0.1	0.00012	21.4	0.1	1.5	1	1	0	1	1	1	1	Methyltransferase	small	domain
TRM	PF02005.11	gi|408406056|ref|YP_006864040.1|	-	7.8e-05	21.7	0.4	9.5e-05	21.4	0.3	1.2	1	0	0	1	1	1	1	N2,N2-dimethylguanosine	tRNA	methyltransferase
DUF2096	PF09869.4	gi|408406056|ref|YP_006864040.1|	-	0.0021	17.9	0.1	0.011	15.6	0.0	2.1	2	0	0	2	2	2	1	Uncharacterized	protein	conserved	in	archaea	(DUF2096)
PrmA	PF06325.8	gi|408406056|ref|YP_006864040.1|	-	0.027	13.5	0.5	0.045	12.8	0.3	1.3	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_24	PF13578.1	gi|408406056|ref|YP_006864040.1|	-	0.048	14.5	0.0	0.13	13.0	0.0	1.8	1	1	0	1	1	1	0	Methyltransferase	domain
ABC_tran	PF00005.22	gi|408406057|ref|YP_006864041.1|	-	2.3e-38	131.5	0.0	6.3e-18	65.3	0.0	2.5	2	0	0	2	2	2	2	ABC	transporter
AAA_21	PF13304.1	gi|408406057|ref|YP_006864041.1|	-	6.4e-13	49.3	1.6	0.0067	16.4	0.0	4.3	2	2	0	3	3	3	3	AAA	domain
SMC_N	PF02463.14	gi|408406057|ref|YP_006864041.1|	-	9.2e-12	44.6	0.7	7.8e-05	21.9	0.1	3.0	2	2	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
Fer4	PF00037.22	gi|408406057|ref|YP_006864041.1|	-	4.2e-08	32.4	3.4	7.2e-08	31.7	2.3	1.4	1	0	0	1	1	1	1	4Fe-4S	binding	domain
Fer4_6	PF12837.2	gi|408406057|ref|YP_006864041.1|	-	2.6e-05	23.8	1.9	4.5e-05	23.1	1.3	1.4	1	0	0	1	1	1	1	4Fe-4S	binding	domain
SbcCD_C	PF13558.1	gi|408406057|ref|YP_006864041.1|	-	0.00011	22.0	0.2	0.86	9.5	0.1	2.9	2	1	0	2	2	2	2	Putative	exonuclease	SbcCD,	C	subunit
Fer4_21	PF14697.1	gi|408406057|ref|YP_006864041.1|	-	0.00021	21.0	2.3	0.00037	20.2	1.6	1.3	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
AAA_25	PF13481.1	gi|408406057|ref|YP_006864041.1|	-	0.00023	20.6	0.7	0.33	10.3	0.0	2.9	3	0	0	3	3	3	2	AAA	domain
AAA_29	PF13555.1	gi|408406057|ref|YP_006864041.1|	-	0.00029	20.2	0.3	0.039	13.4	0.0	2.7	2	0	0	2	2	2	1	P-loop	containing	region	of	AAA	domain
AAA_15	PF13175.1	gi|408406057|ref|YP_006864041.1|	-	0.00031	19.9	0.0	1.1	8.1	0.0	3.1	3	0	0	3	3	3	1	AAA	ATPase	domain
Fer4_10	PF13237.1	gi|408406057|ref|YP_006864041.1|	-	0.00044	20.0	0.2	0.00077	19.2	0.1	1.4	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.2	gi|408406057|ref|YP_006864041.1|	-	0.00056	20.2	0.7	0.0011	19.2	0.5	1.4	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Miro	PF08477.8	gi|408406057|ref|YP_006864041.1|	-	0.0006	20.2	1.1	2.1	8.8	0.0	3.2	2	1	0	2	2	2	2	Miro-like	protein
Fer4_9	PF13187.1	gi|408406057|ref|YP_006864041.1|	-	0.0022	18.2	1.5	0.0049	17.0	1.0	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_2	PF12797.2	gi|408406057|ref|YP_006864041.1|	-	0.0024	17.7	1.9	0.0044	16.8	1.3	1.4	1	0	0	1	1	1	1	4Fe-4S	binding	domain
DUF258	PF03193.11	gi|408406057|ref|YP_006864041.1|	-	0.0036	16.4	0.1	0.095	11.8	0.0	2.4	2	0	0	2	2	2	1	Protein	of	unknown	function,	DUF258
AAA_16	PF13191.1	gi|408406057|ref|YP_006864041.1|	-	0.0048	16.8	2.3	4.5	7.2	0.0	3.1	2	1	0	2	2	2	0	AAA	ATPase	domain
Fer4_16	PF13484.1	gi|408406057|ref|YP_006864041.1|	-	0.0062	17.2	0.1	0.014	16.1	0.1	1.5	1	0	0	1	1	1	1	4Fe-4S	double	cluster	binding	domain
Fer4_3	PF12798.2	gi|408406057|ref|YP_006864041.1|	-	0.0097	16.4	3.7	0.017	15.6	2.5	1.4	1	0	0	1	1	1	1	4Fe-4S	binding	domain
Fer4_8	PF13183.1	gi|408406057|ref|YP_006864041.1|	-	0.013	15.4	0.1	0.026	14.5	0.0	1.4	1	0	0	1	1	1	0	4Fe-4S	dicluster	domain
AAA_23	PF13476.1	gi|408406057|ref|YP_006864041.1|	-	0.015	15.6	3.0	3.7	7.8	0.5	2.5	2	1	0	2	2	2	0	AAA	domain
MMR_HSR1	PF01926.18	gi|408406057|ref|YP_006864041.1|	-	0.017	15.0	0.0	1.5	8.7	0.0	2.7	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
NB-ARC	PF00931.17	gi|408406057|ref|YP_006864041.1|	-	0.041	12.7	2.0	0.3	9.9	0.0	2.4	2	0	0	2	2	2	0	NB-ARC	domain
Fer4_11	PF13247.1	gi|408406057|ref|YP_006864041.1|	-	0.051	13.4	0.1	0.087	12.7	0.0	1.3	1	0	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_17	PF13534.1	gi|408406057|ref|YP_006864041.1|	-	0.056	13.8	0.2	0.14	12.4	0.1	1.6	1	0	0	1	1	1	0	4Fe-4S	dicluster	domain
AAA_17	PF13207.1	gi|408406057|ref|YP_006864041.1|	-	0.075	13.8	5.6	4	8.2	0.2	3.3	2	2	0	2	2	2	0	AAA	domain
Fer4_4	PF12800.2	gi|408406057|ref|YP_006864041.1|	-	0.079	13.3	2.5	0.14	12.5	1.7	1.3	1	0	0	1	1	1	0	4Fe-4S	binding	domain
VirE	PF05272.6	gi|408406057|ref|YP_006864041.1|	-	0.099	12.1	0.2	1.6	8.1	0.0	2.5	2	1	0	2	2	2	0	Virulence-associated	protein	E
AAA_28	PF13521.1	gi|408406057|ref|YP_006864041.1|	-	0.12	12.2	2.2	34	4.3	0.1	3.7	4	0	0	4	4	4	0	AAA	domain
UPF0079	PF02367.12	gi|408406057|ref|YP_006864041.1|	-	0.17	11.5	0.7	5.4	6.6	0.1	2.5	2	0	0	2	2	2	0	Uncharacterised	P-loop	hydrolase	UPF0079
Fer4_18	PF13746.1	gi|408406057|ref|YP_006864041.1|	-	0.19	12.1	2.2	0.47	10.9	1.5	1.6	1	0	0	1	1	1	0	4Fe-4S	dicluster	domain
AAA_33	PF13671.1	gi|408406057|ref|YP_006864041.1|	-	0.19	11.6	0.7	44	3.9	0.0	3.4	3	1	0	3	3	2	0	AAA	domain
AAA_14	PF13173.1	gi|408406057|ref|YP_006864041.1|	-	0.25	11.2	1.6	10	6.0	0.0	3.4	4	0	0	4	4	3	0	AAA	domain
MobB	PF03205.9	gi|408406057|ref|YP_006864041.1|	-	0.25	11.0	5.8	1.6	8.4	0.0	3.2	3	0	0	3	3	3	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
ArgK	PF03308.11	gi|408406057|ref|YP_006864041.1|	-	0.69	8.6	3.1	0.88	8.2	0.3	2.2	2	0	0	2	2	2	0	ArgK	protein
DUF1510	PF07423.6	gi|408406058|ref|YP_006864042.1|	-	0.23	10.8	8.7	0.25	10.6	6.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1510)
Hid1	PF12722.2	gi|408406058|ref|YP_006864042.1|	-	2.1	5.8	7.9	2.2	5.8	5.5	1.0	1	0	0	1	1	1	0	High-temperature-induced	dauer-formation	protein
DHHW	PF14286.1	gi|408406058|ref|YP_006864042.1|	-	3.2	6.9	6.5	4	6.6	4.5	1.1	1	0	0	1	1	1	0	DHHW	protein
Macoilin	PF09726.4	gi|408406058|ref|YP_006864042.1|	-	8.9	4.4	9.4	9.6	4.3	6.5	1.0	1	0	0	1	1	1	0	Transmembrane	protein
Yip1	PF04893.12	gi|408406061|ref|YP_006864045.1|	-	0.00092	18.7	26.3	0.0013	18.2	18.3	1.2	1	0	0	1	1	1	1	Yip1	domain
Peptidase_U4	PF03419.8	gi|408406061|ref|YP_006864045.1|	-	0.22	10.5	9.0	0.28	10.2	6.2	1.1	1	0	0	1	1	1	0	Sporulation	factor	SpoIIGA
DUF3816	PF12822.2	gi|408406061|ref|YP_006864045.1|	-	5.1	6.9	21.7	6.7	6.5	15.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3816)
Peptidase_M17	PF00883.16	gi|408406063|ref|YP_006864047.1|	-	3.3e-116	387.5	0.0	4.1e-116	387.2	0.0	1.1	1	0	0	1	1	1	1	Cytosol	aminopeptidase	family,	catalytic	domain
Peptidase_M17_N	PF02789.12	gi|408406063|ref|YP_006864047.1|	-	2.7e-22	78.8	0.7	9.6e-22	77.0	0.1	2.3	4	0	0	4	4	4	1	Cytosol	aminopeptidase	family,	N-terminal	domain
DUF2122	PF09895.4	gi|408406063|ref|YP_006864047.1|	-	0.13	12.4	1.5	0.97	9.6	0.1	2.4	2	0	0	2	2	2	0	RecB-family	nuclease	(DUF2122)
FYRN	PF05964.9	gi|408406064|ref|YP_006864048.1|	-	0.029	13.8	0.0	0.059	12.8	0.0	1.5	1	0	0	1	1	1	0	F/Y-rich	N-terminus
Transketolase_N	PF00456.16	gi|408406065|ref|YP_006864049.1|	-	4.4e-64	216.4	0.0	6.6e-64	215.8	0.0	1.2	1	0	0	1	1	1	1	Transketolase,	thiamine	diphosphate	binding	domain
Ribul_P_3_epim	PF00834.14	gi|408406065|ref|YP_006864049.1|	-	2.7e-58	196.3	0.0	4.3e-58	195.7	0.0	1.2	1	0	0	1	1	1	1	Ribulose-phosphate	3	epimerase	family
E1_dh	PF00676.15	gi|408406065|ref|YP_006864049.1|	-	1.2e-08	34.0	0.0	1.9e-08	33.4	0.0	1.2	1	0	0	1	1	1	1	Dehydrogenase	E1	component
DXP_synthase_N	PF13292.1	gi|408406065|ref|YP_006864049.1|	-	1.3e-07	30.8	0.1	0.00015	20.7	0.1	2.6	3	0	0	3	3	3	2	1-deoxy-D-xylulose-5-phosphate	synthase
TPP_enzyme_C	PF02775.16	gi|408406065|ref|YP_006864049.1|	-	0.00038	20.0	0.4	0.0096	15.5	0.3	2.3	1	1	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
XFP_N	PF09364.5	gi|408406065|ref|YP_006864049.1|	-	0.035	12.6	0.0	0.058	11.9	0.0	1.3	1	0	0	1	1	1	0	XFP	N-terminal	domain
Transket_pyr	PF02779.19	gi|408406066|ref|YP_006864050.1|	-	3.3e-35	121.1	0.0	4.8e-35	120.6	0.0	1.2	1	0	0	1	1	1	1	Transketolase,	pyrimidine	binding	domain
Transketolase_C	PF02780.15	gi|408406066|ref|YP_006864050.1|	-	5.2e-31	107.1	1.9	9.6e-31	106.3	0.2	2.1	2	0	0	2	2	2	1	Transketolase,	C-terminal	domain
Transaldolase	PF00923.14	gi|408406067|ref|YP_006864051.1|	-	1.3e-60	204.9	1.1	2.4e-59	200.8	0.8	2.0	1	1	0	1	1	1	1	Transaldolase
VWA	PF00092.23	gi|408406068|ref|YP_006864052.1|	-	2.8e-06	27.1	0.0	6.7e-06	25.9	0.0	1.6	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
vWA-TerF-like	PF10138.4	gi|408406068|ref|YP_006864052.1|	-	0.034	13.9	0.1	0.16	11.7	0.0	2.1	2	1	0	2	2	2	0	vWA	found	in	TerF	C	terminus
DUF3507	PF12015.3	gi|408406068|ref|YP_006864052.1|	-	0.08	12.4	0.1	0.14	11.6	0.1	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3507)
AAA_5	PF07728.9	gi|408406069|ref|YP_006864053.1|	-	6.9e-28	97.1	0.0	9.9e-28	96.6	0.0	1.2	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
AAA_3	PF07726.6	gi|408406069|ref|YP_006864053.1|	-	6.4e-12	45.2	0.0	9.7e-12	44.6	0.0	1.3	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA	PF00004.24	gi|408406069|ref|YP_006864053.1|	-	6.6e-08	32.8	0.0	1.1e-07	32.0	0.0	1.4	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_16	PF13191.1	gi|408406069|ref|YP_006864053.1|	-	1.4e-07	31.7	0.2	2.7e-07	30.7	0.1	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
Arch_ATPase	PF01637.13	gi|408406069|ref|YP_006864053.1|	-	1.5e-06	28.0	0.0	3e-06	27.1	0.0	1.5	1	0	0	1	1	1	1	Archaeal	ATPase
AAA_14	PF13173.1	gi|408406069|ref|YP_006864053.1|	-	5.9e-06	26.2	0.0	1.5e-05	24.8	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
RuvB_N	PF05496.7	gi|408406069|ref|YP_006864053.1|	-	5.9e-06	25.4	0.2	0.00012	21.1	0.1	2.1	1	1	0	1	1	1	1	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_17	PF13207.1	gi|408406069|ref|YP_006864053.1|	-	2.1e-05	25.3	0.0	4.1e-05	24.3	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_22	PF13401.1	gi|408406069|ref|YP_006864053.1|	-	5.4e-05	23.3	0.2	0.00016	21.7	0.1	1.9	1	1	0	1	1	1	1	AAA	domain
Sigma54_activ_2	PF14532.1	gi|408406069|ref|YP_006864053.1|	-	5.6e-05	23.2	0.0	0.00044	20.3	0.0	2.2	2	1	0	2	2	2	1	Sigma-54	interaction	domain
KAP_NTPase	PF07693.9	gi|408406069|ref|YP_006864053.1|	-	0.00023	20.2	0.0	0.00028	19.9	0.0	1.2	1	0	0	1	1	1	1	KAP	family	P-loop	domain
MobB	PF03205.9	gi|408406069|ref|YP_006864053.1|	-	0.00024	20.8	0.0	0.00047	19.8	0.0	1.5	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
Sigma54_activat	PF00158.21	gi|408406069|ref|YP_006864053.1|	-	0.00028	20.4	0.1	0.00084	18.8	0.1	1.7	1	1	0	1	1	1	1	Sigma-54	interaction	domain
Mg_chelatase	PF01078.16	gi|408406069|ref|YP_006864053.1|	-	0.00048	19.3	0.1	0.65	9.1	0.0	2.3	1	1	1	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
NACHT	PF05729.7	gi|408406069|ref|YP_006864053.1|	-	0.00067	19.3	0.0	0.0011	18.5	0.0	1.4	1	0	0	1	1	1	1	NACHT	domain
AAA_11	PF13086.1	gi|408406069|ref|YP_006864053.1|	-	0.00078	19.0	0.0	0.0012	18.4	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_28	PF13521.1	gi|408406069|ref|YP_006864053.1|	-	0.00091	19.2	0.1	0.0036	17.2	0.0	2.0	2	0	0	2	2	2	1	AAA	domain
AAA_19	PF13245.1	gi|408406069|ref|YP_006864053.1|	-	0.00092	18.9	0.0	0.0023	17.6	0.0	1.7	1	0	0	1	1	1	1	Part	of	AAA	domain
ABC_tran	PF00005.22	gi|408406069|ref|YP_006864053.1|	-	0.001	19.3	0.1	0.002	18.4	0.0	1.8	1	1	0	1	1	1	1	ABC	transporter
Miro	PF08477.8	gi|408406069|ref|YP_006864053.1|	-	0.0017	18.8	0.1	0.011	16.2	0.1	2.1	2	0	0	2	2	2	1	Miro-like	protein
SRP54	PF00448.17	gi|408406069|ref|YP_006864053.1|	-	0.0021	17.5	0.0	0.0047	16.3	0.0	1.5	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
T2SE	PF00437.15	gi|408406069|ref|YP_006864053.1|	-	0.003	16.5	0.1	0.0094	14.8	0.0	1.7	2	0	0	2	2	2	1	Type	II/IV	secretion	system	protein
AAA_18	PF13238.1	gi|408406069|ref|YP_006864053.1|	-	0.0044	17.3	0.2	0.0081	16.4	0.1	1.7	1	1	0	1	1	1	1	AAA	domain
CbbQ_C	PF08406.5	gi|408406069|ref|YP_006864053.1|	-	0.0047	16.9	0.1	0.0075	16.2	0.0	1.4	1	0	0	1	1	1	1	CbbQ/NirQ/NorQ	C-terminal
UPF0079	PF02367.12	gi|408406069|ref|YP_006864053.1|	-	0.006	16.2	0.0	0.014	15.0	0.0	1.7	1	0	0	1	1	1	1	Uncharacterised	P-loop	hydrolase	UPF0079
AAA_33	PF13671.1	gi|408406069|ref|YP_006864053.1|	-	0.008	16.0	0.1	0.014	15.2	0.1	1.6	1	1	0	1	1	1	1	AAA	domain
AAA_24	PF13479.1	gi|408406069|ref|YP_006864053.1|	-	0.0088	15.6	0.1	0.021	14.4	0.1	1.6	2	0	0	2	2	1	1	AAA	domain
RNA_helicase	PF00910.17	gi|408406069|ref|YP_006864053.1|	-	0.0093	16.1	0.0	0.018	15.2	0.0	1.5	1	0	0	1	1	1	1	RNA	helicase
AAA_30	PF13604.1	gi|408406069|ref|YP_006864053.1|	-	0.01	15.4	0.5	0.033	13.7	0.1	2.1	2	1	0	2	2	2	0	AAA	domain
AAA_25	PF13481.1	gi|408406069|ref|YP_006864053.1|	-	0.011	15.1	0.1	0.025	13.9	0.1	1.6	1	1	0	1	1	1	0	AAA	domain
NTPase_1	PF03266.10	gi|408406069|ref|YP_006864053.1|	-	0.014	15.1	0.0	0.025	14.3	0.0	1.5	1	0	0	1	1	1	0	NTPase
AAA_29	PF13555.1	gi|408406069|ref|YP_006864053.1|	-	0.017	14.6	0.0	0.036	13.5	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
KaiC	PF06745.8	gi|408406069|ref|YP_006864053.1|	-	0.019	14.1	0.0	0.034	13.2	0.0	1.4	1	0	0	1	1	1	0	KaiC
AAA_35	PF14516.1	gi|408406069|ref|YP_006864053.1|	-	0.024	13.3	0.0	0.055	12.0	0.0	1.6	1	1	1	2	2	2	0	AAA-like	domain
DUF258	PF03193.11	gi|408406069|ref|YP_006864053.1|	-	0.031	13.4	0.0	0.053	12.7	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
AAA_32	PF13654.1	gi|408406069|ref|YP_006864053.1|	-	0.067	11.8	0.0	0.11	11.1	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
DUF815	PF05673.8	gi|408406069|ref|YP_006864053.1|	-	0.089	11.7	0.1	0.26	10.1	0.0	1.8	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF815)
PhoH	PF02562.11	gi|408406069|ref|YP_006864053.1|	-	0.097	11.8	0.0	0.16	11.2	0.0	1.4	1	0	0	1	1	1	0	PhoH-like	protein
AAA_13	PF13166.1	gi|408406069|ref|YP_006864053.1|	-	0.1	11.0	0.0	0.14	10.6	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
NB-ARC	PF00931.17	gi|408406069|ref|YP_006864053.1|	-	0.11	11.3	0.0	0.14	10.9	0.0	1.3	1	0	0	1	1	1	0	NB-ARC	domain
AAA_23	PF13476.1	gi|408406069|ref|YP_006864053.1|	-	0.12	12.6	0.1	0.25	11.6	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
Viral_helicase1	PF01443.13	gi|408406069|ref|YP_006864053.1|	-	0.13	11.7	0.0	0.19	11.1	0.0	1.2	1	0	0	1	1	1	0	Viral	(Superfamily	1)	RNA	helicase
Rad17	PF03215.10	gi|408406069|ref|YP_006864053.1|	-	0.13	10.8	0.0	0.24	10.0	0.0	1.4	1	0	0	1	1	1	0	Rad17	cell	cycle	checkpoint	protein
G-alpha	PF00503.15	gi|408406069|ref|YP_006864053.1|	-	0.16	10.6	0.0	0.19	10.3	0.0	1.4	1	1	0	1	1	1	0	G-protein	alpha	subunit
Cytochrom_CIII	PF02085.11	gi|408406070|ref|YP_006864054.1|	-	0.031	14.3	6.1	0.036	14.1	4.2	1.1	1	0	0	1	1	1	0	Class	III	cytochrome	C	family
Ribosomal_L37ae	PF01780.14	gi|408406070|ref|YP_006864054.1|	-	0.097	12.5	2.6	0.11	12.3	1.8	1.2	1	0	0	1	1	1	0	Ribosomal	L37ae	protein	family
GFA	PF04828.9	gi|408406070|ref|YP_006864054.1|	-	0.12	12.2	7.1	1.4	8.9	0.1	2.1	2	0	0	2	2	2	0	Glutathione-dependent	formaldehyde-activating	enzyme
DUF4503	PF14951.1	gi|408406070|ref|YP_006864054.1|	-	0.13	10.3	3.7	0.13	10.4	1.6	1.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4503)
Zn_Tnp_IS1595	PF12760.2	gi|408406070|ref|YP_006864054.1|	-	0.4	10.5	7.4	0.59	9.9	5.1	1.3	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
Ribosomal_L37e	PF01907.14	gi|408406070|ref|YP_006864054.1|	-	3.4	7.5	9.0	9.8	6.0	5.5	2.1	2	1	0	2	2	2	0	Ribosomal	protein	L37e
DUF2250	PF10007.4	gi|408406071|ref|YP_006864055.1|	-	0.064	13.1	0.2	0.11	12.3	0.1	1.4	1	1	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
Hydrolase_like	PF13242.1	gi|408406071|ref|YP_006864055.1|	-	0.25	11.0	1.8	0.26	11.0	0.5	1.7	2	0	0	2	2	2	0	HAD-hyrolase-like
RNR_N	PF08343.5	gi|408406072|ref|YP_006864056.1|	-	0.012	15.3	0.1	0.024	14.4	0.1	1.5	1	0	0	1	1	1	0	Ribonucleotide	reductase	N-terminal
MgtE_N	PF03448.12	gi|408406072|ref|YP_006864056.1|	-	0.038	14.3	0.0	0.061	13.6	0.0	1.4	1	0	0	1	1	1	0	MgtE	intracellular	N	domain
DUF2555	PF10742.4	gi|408406072|ref|YP_006864056.1|	-	0.058	13.0	0.0	0.082	12.5	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2555)
TerC	PF03741.11	gi|408406073|ref|YP_006864057.1|	-	5.1e-54	182.5	18.2	4.3e-53	179.4	9.5	3.0	3	0	0	3	3	3	1	Integral	membrane	protein	TerC	family
DUF4492	PF14899.1	gi|408406073|ref|YP_006864057.1|	-	6.8	6.2	7.8	9	5.8	1.5	3.3	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4492)
DUF3291	PF11695.3	gi|408406074|ref|YP_006864058.1|	-	0.00014	21.2	0.6	0.00015	21.1	0.4	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF3291)
DUF4188	PF13826.1	gi|408406074|ref|YP_006864058.1|	-	0.012	15.6	0.4	0.012	15.6	0.3	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4188)
DUF460	PF04312.8	gi|408406075|ref|YP_006864059.1|	-	9.6e-05	21.9	0.1	0.00016	21.2	0.1	1.5	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF460)
UPF0081	PF03652.10	gi|408406075|ref|YP_006864059.1|	-	0.0011	19.0	0.3	0.017	15.2	0.2	2.2	1	1	0	1	1	1	1	Uncharacterised	protein	family	(UPF0081)
EIIBC-GUT_C	PF07663.6	gi|408406075|ref|YP_006864059.1|	-	0.012	15.7	0.0	0.017	15.2	0.0	1.3	1	0	0	1	1	1	0	Sorbitol	phosphotransferase	enzyme	II	C-terminus
Glyco_transf_54	PF04666.8	gi|408406075|ref|YP_006864059.1|	-	0.037	12.7	0.1	0.069	11.8	0.1	1.4	1	1	0	1	1	1	0	N-Acetylglucosaminyltransferase-IV	(GnT-IV)	conserved	region
DUF972	PF06156.8	gi|408406076|ref|YP_006864060.1|	-	0.0038	17.5	1.9	0.0062	16.8	1.3	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF972)
Apolipoprotein	PF01442.13	gi|408406076|ref|YP_006864060.1|	-	0.0043	16.5	0.9	0.005	16.3	0.7	1.1	1	0	0	1	1	1	1	Apolipoprotein	A1/A4/E	domain
ATP-synt_B	PF00430.13	gi|408406076|ref|YP_006864060.1|	-	0.0073	16.1	8.8	0.029	14.1	6.3	1.8	1	1	1	2	2	2	1	ATP	synthase	B/B'	CF(0)
DivIVA	PF05103.8	gi|408406076|ref|YP_006864060.1|	-	0.0095	15.9	4.0	0.015	15.3	2.8	1.4	1	0	0	1	1	1	1	DivIVA	protein
DUF883	PF05957.8	gi|408406076|ref|YP_006864060.1|	-	0.011	16.0	3.3	0.13	12.6	1.6	2.2	1	1	1	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF883)
Reo_sigmaC	PF04582.7	gi|408406076|ref|YP_006864060.1|	-	0.012	14.8	0.5	0.015	14.5	0.3	1.2	1	0	0	1	1	1	0	Reovirus	sigma	C	capsid	protein
Hyccin	PF09790.4	gi|408406076|ref|YP_006864060.1|	-	0.014	14.2	0.3	0.017	13.9	0.2	1.2	1	0	0	1	1	1	0	Hyccin
VBS	PF08913.5	gi|408406076|ref|YP_006864060.1|	-	0.027	14.7	0.4	0.049	13.8	0.3	1.4	1	0	0	1	1	1	0	Vinculin	Binding	Site
Spore_III_AB	PF09548.5	gi|408406076|ref|YP_006864060.1|	-	0.029	14.1	1.1	0.056	13.2	0.8	1.4	1	1	0	1	1	1	0	Stage	III	sporulation	protein	AB	(spore_III_AB)
Spc7	PF08317.6	gi|408406076|ref|YP_006864060.1|	-	0.03	13.0	0.6	0.034	12.7	0.4	1.1	1	0	0	1	1	1	0	Spc7	kinetochore	protein
Exonuc_VII_L	PF02601.10	gi|408406076|ref|YP_006864060.1|	-	0.033	13.3	1.9	0.039	13.1	1.3	1.1	1	0	0	1	1	1	0	Exonuclease	VII,	large	subunit
MIS13	PF08202.6	gi|408406076|ref|YP_006864060.1|	-	0.037	13.1	0.8	0.066	12.2	0.5	1.5	1	1	0	1	1	1	0	Mis12-Mtw1	protein	family
DUF826	PF05696.6	gi|408406076|ref|YP_006864060.1|	-	0.045	13.8	3.4	0.054	13.6	0.2	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF826)
Herpes_U30	PF04523.8	gi|408406076|ref|YP_006864060.1|	-	0.052	11.0	0.1	0.053	10.9	0.0	1.0	1	0	0	1	1	1	0	Herpes	virus	tegument	protein	U30
DUF760	PF05542.6	gi|408406076|ref|YP_006864060.1|	-	0.088	12.9	1.0	1.6	8.9	0.0	2.4	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF760)
Gp_dh_C	PF02800.15	gi|408406076|ref|YP_006864060.1|	-	0.095	12.1	0.7	0.17	11.3	0.5	1.5	1	1	0	1	1	1	0	Glyceraldehyde	3-phosphate	dehydrogenase,	C-terminal	domain
Duffy_binding	PF05424.6	gi|408406076|ref|YP_006864060.1|	-	0.095	12.5	0.3	0.12	12.1	0.2	1.2	1	0	0	1	1	1	0	Duffy	binding	domain
CDC37_N	PF03234.9	gi|408406076|ref|YP_006864060.1|	-	0.12	12.6	2.8	0.15	12.3	1.9	1.1	1	0	0	1	1	1	0	Cdc37	N	terminal	kinase	binding
DUF1664	PF07889.7	gi|408406076|ref|YP_006864060.1|	-	0.19	11.5	2.7	0.38	10.5	0.9	1.9	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1664)
DUF4611	PF15387.1	gi|408406076|ref|YP_006864060.1|	-	0.22	11.7	2.4	0.72	10.0	1.4	1.9	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF4611)
DUF2894	PF11445.3	gi|408406076|ref|YP_006864060.1|	-	0.22	11.7	2.2	0.31	11.2	1.5	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2894)
DUF3552	PF12072.3	gi|408406076|ref|YP_006864060.1|	-	0.25	10.5	10.3	0.2	10.8	5.4	1.9	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3552)
HrpE	PF06188.7	gi|408406076|ref|YP_006864060.1|	-	0.37	10.5	4.0	0.57	9.8	2.8	1.3	1	1	0	1	1	1	0	HrpE/YscL/FliH	and	V-type	ATPase	subunit	E
Phage_Mu_Gam	PF07352.7	gi|408406076|ref|YP_006864060.1|	-	0.4	10.1	5.0	2.9	7.3	1.1	2.1	1	1	1	2	2	2	0	Bacteriophage	Mu	Gam	like	protein
KfrA_N	PF11740.3	gi|408406076|ref|YP_006864060.1|	-	0.67	10.4	8.4	1.9	8.9	3.5	2.2	1	1	1	2	2	2	0	Plasmid	replication	region	DNA-binding	N-term
FlaC_arch	PF05377.6	gi|408406076|ref|YP_006864060.1|	-	0.78	9.6	4.9	19	5.2	3.4	2.5	1	1	0	1	1	1	0	Flagella	accessory	protein	C	(FlaC)
V-ATPase_G	PF03179.10	gi|408406076|ref|YP_006864060.1|	-	0.91	9.8	9.4	3	8.1	1.4	2.9	1	1	2	3	3	3	0	Vacuolar	(H+)-ATPase	G	subunit
NAC	PF01849.13	gi|408406077|ref|YP_006864061.1|	-	2.9e-12	45.9	2.4	1.6e-11	43.5	0.6	2.0	2	0	0	2	2	2	1	NAC	domain
UBA	PF00627.26	gi|408406077|ref|YP_006864061.1|	-	0.00028	20.6	1.3	0.00029	20.5	0.1	1.7	2	0	0	2	2	2	1	UBA/TS-N	domain
DUF3826	PF12875.2	gi|408406077|ref|YP_006864061.1|	-	0.027	14.1	0.7	0.029	14.0	0.5	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3826)
GAS	PF13851.1	gi|408406077|ref|YP_006864061.1|	-	0.066	12.3	1.4	0.7	9.0	0.4	2.0	1	1	1	2	2	2	0	Growth-arrest	specific	micro-tubule	binding
PUA	PF01472.15	gi|408406078|ref|YP_006864062.1|	-	1.3e-09	37.5	0.0	2.1e-09	36.9	0.0	1.3	1	0	0	1	1	1	1	PUA	domain
TGT_C2	PF14810.1	gi|408406078|ref|YP_006864062.1|	-	8.5e-08	31.9	0.1	1.3e-07	31.3	0.1	1.3	1	0	0	1	1	1	1	Patch-forming	domain	C2	of	tRNA-guanine	transglycosylase
PhoU	PF01895.14	gi|408406079|ref|YP_006864063.1|	-	9.9e-26	90.0	16.4	1.5e-18	67.0	1.6	2.8	3	0	0	3	3	3	2	PhoU	domain
Antitoxin-MazE	PF04014.13	gi|408406079|ref|YP_006864063.1|	-	5.9e-10	38.6	0.4	2.2e-09	36.8	0.0	2.1	2	0	0	2	2	2	1	Antidote-toxin	recognition	MazE
HTH_3	PF01381.17	gi|408406080|ref|YP_006864064.1|	-	2.3e-07	30.5	0.1	4.1e-07	29.7	0.1	1.4	1	0	0	1	1	1	1	Helix-turn-helix
HTH_31	PF13560.1	gi|408406080|ref|YP_006864064.1|	-	1.9e-05	24.7	0.0	3.1e-05	24.0	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_19	PF12844.2	gi|408406080|ref|YP_006864064.1|	-	0.016	15.2	0.5	0.027	14.5	0.4	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_25	PF13413.1	gi|408406080|ref|YP_006864064.1|	-	0.021	14.4	0.2	0.06	12.9	0.1	1.8	1	1	0	1	1	1	0	Helix-turn-helix	domain
zf-dskA_traR	PF01258.12	gi|408406080|ref|YP_006864064.1|	-	0.046	13.4	1.5	0.17	11.6	1.0	1.9	1	1	0	1	1	1	0	Prokaryotic	dksA/traR	C4-type	zinc	finger
NOB1_Zn_bind	PF08772.6	gi|408406080|ref|YP_006864064.1|	-	0.18	11.6	1.8	0.48	10.2	1.2	1.8	1	1	1	2	2	2	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
zf-C2H2_jaz	PF12171.3	gi|408406080|ref|YP_006864064.1|	-	0.42	10.8	2.2	9.9	6.4	0.1	2.3	2	0	0	2	2	2	0	Zinc-finger	double-stranded	RNA-binding
MMR_HSR1	PF01926.18	gi|408406081|ref|YP_006864065.1|	-	9.7e-16	57.7	0.7	3.2e-15	56.1	0.2	2.0	2	0	0	2	2	2	1	50S	ribosome-binding	GTPase
GTP-bdg_N	PF13167.1	gi|408406081|ref|YP_006864065.1|	-	3.7e-12	46.2	0.4	1.3e-11	44.4	0.1	2.0	2	0	0	2	2	2	1	GTP-binding	GTPase	N-terminal
GTP_EFTU	PF00009.22	gi|408406081|ref|YP_006864065.1|	-	5.7e-06	25.8	1.6	0.0052	16.2	0.1	2.6	2	0	0	2	2	2	2	Elongation	factor	Tu	GTP	binding	domain
FeoB_N	PF02421.13	gi|408406081|ref|YP_006864065.1|	-	6.9e-06	25.4	0.6	2.3e-05	23.7	0.4	2.0	1	1	0	1	1	1	1	Ferrous	iron	transport	protein	B
PduV-EutP	PF10662.4	gi|408406081|ref|YP_006864065.1|	-	0.004	16.6	1.8	0.19	11.2	1.3	2.4	1	1	0	1	1	1	1	Ethanolamine	utilisation	-	propanediol	utilisation
ABC_tran	PF00005.22	gi|408406081|ref|YP_006864065.1|	-	0.0057	16.9	0.1	0.039	14.2	0.0	2.3	2	0	0	2	2	2	1	ABC	transporter
SRPRB	PF09439.5	gi|408406081|ref|YP_006864065.1|	-	0.0062	15.7	0.1	0.0062	15.7	0.1	2.0	2	0	0	2	2	2	1	Signal	recognition	particle	receptor	beta	subunit
MobB	PF03205.9	gi|408406081|ref|YP_006864065.1|	-	0.016	14.9	0.3	0.059	13.0	0.1	2.1	2	0	0	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
Ras	PF00071.17	gi|408406081|ref|YP_006864065.1|	-	0.034	13.5	1.2	0.16	11.3	0.2	2.4	2	1	0	2	2	2	0	Ras	family
T2SE	PF00437.15	gi|408406081|ref|YP_006864065.1|	-	0.036	12.9	0.6	0.15	10.9	0.1	2.1	2	0	0	2	2	2	0	Type	II/IV	secretion	system	protein
Miro	PF08477.8	gi|408406081|ref|YP_006864065.1|	-	0.041	14.3	0.1	0.14	12.6	0.1	2.0	1	0	0	1	1	1	0	Miro-like	protein
Dynamin_N	PF00350.18	gi|408406081|ref|YP_006864065.1|	-	0.044	13.5	0.4	0.92	9.3	0.0	2.5	1	1	1	2	2	2	0	Dynamin	family
DUF258	PF03193.11	gi|408406081|ref|YP_006864065.1|	-	0.11	11.6	0.0	0.29	10.3	0.0	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
cobW	PF02492.14	gi|408406081|ref|YP_006864065.1|	-	0.53	9.7	5.9	0.8	9.1	0.1	2.6	2	1	1	3	3	3	0	CobW/HypB/UreG,	nucleotide-binding	domain
Trm56	PF01994.11	gi|408406082|ref|YP_006864066.1|	-	8.3e-52	174.0	0.1	1.1e-51	173.6	0.1	1.1	1	0	0	1	1	1	1	tRNA	ribose	2'-O-methyltransferase,	aTrm56
SpoU_methylase	PF00588.14	gi|408406082|ref|YP_006864066.1|	-	0.00031	20.6	0.0	0.00041	20.2	0.0	1.1	1	0	0	1	1	1	1	SpoU	rRNA	Methylase	family
SPOUT_MTase_2	PF14419.1	gi|408406082|ref|YP_006864066.1|	-	0.031	13.4	0.0	0.067	12.3	0.0	1.4	1	1	0	1	1	1	0	AF2226-like	SPOUT	RNA	Methylase	fused	to	THUMP
Glyoxalase_4	PF13669.1	gi|408406082|ref|YP_006864066.1|	-	0.033	14.2	0.0	0.045	13.7	0.0	1.3	1	0	0	1	1	1	0	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
HTH_20	PF12840.2	gi|408406083|ref|YP_006864067.1|	-	2.1e-14	53.0	0.1	3.8e-14	52.2	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.15	gi|408406083|ref|YP_006864067.1|	-	1.2e-13	50.4	0.0	1.8e-13	49.9	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_24	PF13412.1	gi|408406083|ref|YP_006864067.1|	-	4.2e-06	26.0	0.0	8e-06	25.1	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.2	gi|408406083|ref|YP_006864067.1|	-	2e-05	24.1	0.1	2.9e-05	23.6	0.0	1.2	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.14	gi|408406083|ref|YP_006864067.1|	-	0.00042	19.9	0.0	0.00074	19.1	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_34	PF13601.1	gi|408406083|ref|YP_006864067.1|	-	0.0016	18.4	0.0	0.0028	17.6	0.0	1.4	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
MarR	PF01047.17	gi|408406083|ref|YP_006864067.1|	-	0.012	15.3	0.0	0.019	14.6	0.0	1.4	1	0	0	1	1	1	0	MarR	family
Rrf2	PF02082.15	gi|408406083|ref|YP_006864067.1|	-	0.016	15.3	0.0	0.021	14.9	0.0	1.2	1	0	0	1	1	1	0	Transcriptional	regulator
Phage_rep_org_N	PF09681.5	gi|408406083|ref|YP_006864067.1|	-	0.016	14.7	0.0	0.022	14.3	0.0	1.5	1	1	0	1	1	1	0	N-terminal	phage	replisome	organiser	(Phage_rep_org_N)
TFIIE_alpha	PF02002.12	gi|408406083|ref|YP_006864067.1|	-	0.055	12.9	0.1	0.088	12.3	0.1	1.5	1	1	0	1	1	1	0	TFIIE	alpha	subunit
HTH_27	PF13463.1	gi|408406083|ref|YP_006864067.1|	-	0.073	13.3	0.0	0.13	12.6	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_29	PF13551.1	gi|408406083|ref|YP_006864067.1|	-	0.084	13.0	0.0	0.11	12.6	0.0	1.2	1	0	0	1	1	1	0	Winged	helix-turn	helix
HTH_11	PF08279.7	gi|408406083|ref|YP_006864067.1|	-	0.1	12.2	0.0	0.15	11.6	0.0	1.4	1	0	0	1	1	1	0	HTH	domain
Bac_globin	PF01152.16	gi|408406084|ref|YP_006864068.1|	-	0.12	12.4	0.0	0.17	11.8	0.0	1.3	1	0	0	1	1	1	0	Bacterial-like	globin
CTP_transf_1	PF01148.15	gi|408406085|ref|YP_006864069.1|	-	1.2e-12	48.0	15.3	3.7e-10	39.8	5.1	2.4	1	1	1	2	2	2	2	Cytidylyltransferase	family
DUF1664	PF07889.7	gi|408406085|ref|YP_006864069.1|	-	0.022	14.5	0.1	0.034	13.9	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
DUF697	PF05128.7	gi|408406085|ref|YP_006864069.1|	-	1.2	8.6	3.4	2.9	7.3	0.1	2.3	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF697)
AMP-binding	PF00501.23	gi|408406086|ref|YP_006864070.1|	-	2.1e-87	293.1	0.0	2.8e-87	292.8	0.0	1.1	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.1	gi|408406086|ref|YP_006864070.1|	-	1.3e-19	70.8	0.5	3.1e-19	69.6	0.4	1.7	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
Cons_hypoth95	PF03602.10	gi|408406087|ref|YP_006864071.1|	-	0.00021	20.7	0.0	0.00023	20.6	0.0	1.1	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
RsmJ	PF04378.8	gi|408406087|ref|YP_006864071.1|	-	0.011	14.7	0.0	0.011	14.7	0.0	1.1	1	0	0	1	1	1	0	Ribosomal	RNA	small	subunit	methyltransferase	D,	RsmJ
MethyltransfD12	PF02086.10	gi|408406087|ref|YP_006864071.1|	-	0.02	14.3	0.0	0.02	14.3	0.0	1.1	1	0	0	1	1	1	0	D12	class	N6	adenine-specific	DNA	methyltransferase
Methyltransf_26	PF13659.1	gi|408406087|ref|YP_006864071.1|	-	0.03	14.3	0.0	0.03	14.3	0.0	1.1	1	0	0	1	1	1	0	Methyltransferase	domain
SAM_MT	PF04445.8	gi|408406087|ref|YP_006864071.1|	-	0.068	12.3	0.0	0.083	12.0	0.0	1.1	1	0	0	1	1	1	0	Putative	SAM-dependent	methyltransferase
N6_N4_Mtase	PF01555.13	gi|408406087|ref|YP_006864071.1|	-	0.14	11.6	0.0	0.16	11.4	0.0	1.1	1	0	0	1	1	1	0	DNA	methylase
N6_N4_Mtase	PF01555.13	gi|408406088|ref|YP_006864072.1|	-	1.2e-08	34.7	0.0	1.2e-08	34.7	0.0	1.0	1	0	0	1	1	1	1	DNA	methylase
N6_N4_Mtase	PF01555.13	gi|408406089|ref|YP_006864073.1|	-	4.6e-21	75.3	0.0	5.2e-21	75.2	0.0	1.1	1	0	0	1	1	1	1	DNA	methylase
Methyltransf_26	PF13659.1	gi|408406089|ref|YP_006864073.1|	-	2.9e-05	24.0	0.0	3.7e-05	23.7	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|408406089|ref|YP_006864073.1|	-	0.0031	17.1	0.0	0.0042	16.6	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
MethyltransfD12	PF02086.10	gi|408406089|ref|YP_006864073.1|	-	0.013	15.0	0.0	0.016	14.7	0.0	1.1	1	0	0	1	1	1	0	D12	class	N6	adenine-specific	DNA	methyltransferase
UPF0020	PF01170.13	gi|408406089|ref|YP_006864073.1|	-	0.015	14.8	0.0	0.02	14.4	0.0	1.2	1	0	0	1	1	1	0	Putative	RNA	methylase	family	UPF0020
Methyltransf_15	PF09445.5	gi|408406089|ref|YP_006864073.1|	-	0.044	13.3	0.0	0.068	12.7	0.0	1.3	1	0	0	1	1	1	0	RNA	cap	guanine-N2	methyltransferase
Methyltransf_25	PF13649.1	gi|408406089|ref|YP_006864073.1|	-	0.063	13.6	0.0	0.088	13.1	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
Mrr_cat	PF04471.7	gi|408406090|ref|YP_006864074.1|	-	0.0015	18.2	0.0	0.0024	17.6	0.0	1.4	1	0	0	1	1	1	1	Restriction	endonuclease
rve_3	PF13683.1	gi|408406091|ref|YP_006864075.1|	-	0.00014	21.2	0.1	0.0002	20.8	0.0	1.2	1	0	0	1	1	1	1	Integrase	core	domain
DUF4187	PF13821.1	gi|408406091|ref|YP_006864075.1|	-	0.034	13.7	0.1	0.048	13.2	0.1	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4187)
DUF1749	PF08538.5	gi|408406091|ref|YP_006864075.1|	-	0.097	11.5	0.1	0.099	11.5	0.1	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1749)
DDE_Tnp_IS240	PF13610.1	gi|408406091|ref|YP_006864075.1|	-	0.11	12.4	0.2	0.18	11.7	0.1	1.4	2	0	0	2	2	2	0	DDE	domain
DDE_Tnp_IS66	PF03050.9	gi|408406092|ref|YP_006864076.1|	-	0.0011	18.3	0.0	0.0015	17.8	0.0	1.2	1	0	0	1	1	1	1	Transposase	IS66	family
Zn_ribbon_recom	PF13408.1	gi|408406092|ref|YP_006864076.1|	-	0.011	15.9	1.2	0.026	14.7	0.8	1.6	1	0	0	1	1	1	0	Recombinase	zinc	beta	ribbon	domain
Arg_repressor	PF01316.16	gi|408406092|ref|YP_006864076.1|	-	0.02	14.4	0.0	0.039	13.5	0.0	1.4	1	0	0	1	1	1	0	Arginine	repressor,	DNA	binding	domain
Zn_Tnp_IS1595	PF12760.2	gi|408406092|ref|YP_006864076.1|	-	0.02	14.7	3.4	0.043	13.6	2.4	1.5	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
Transposase_mut	PF00872.13	gi|408406092|ref|YP_006864076.1|	-	0.057	11.9	0.0	0.12	10.9	0.0	1.5	1	1	0	1	1	1	0	Transposase,	Mutator	family
HTH_28	PF13518.1	gi|408406092|ref|YP_006864076.1|	-	0.059	13.3	0.7	1.1	9.3	0.1	3.0	2	1	0	2	2	2	0	Helix-turn-helix	domain
Zn-ribbon_8	PF09723.5	gi|408406092|ref|YP_006864076.1|	-	0.11	12.4	1.6	16	5.5	0.0	2.7	2	0	0	2	2	2	0	Zinc	ribbon	domain
Terminase_5	PF06056.7	gi|408406092|ref|YP_006864076.1|	-	0.12	11.8	0.0	0.26	10.8	0.0	1.6	1	0	0	1	1	1	0	Putative	ATPase	subunit	of	terminase	(gpP-like)
Zn_Tnp_IS1	PF03811.8	gi|408406092|ref|YP_006864076.1|	-	1	8.9	4.8	2.2	7.8	3.3	1.6	1	0	0	1	1	1	0	InsA	N-terminal	domain
Peptidase_M1	PF01433.15	gi|408406094|ref|YP_006864078.1|	-	1.5e-76	258.0	0.7	2.2e-76	257.4	0.5	1.2	1	0	0	1	1	1	1	Peptidase	family	M1
HEAT_2	PF13646.1	gi|408406094|ref|YP_006864078.1|	-	3.9e-27	94.3	7.4	1.8e-09	37.7	0.1	3.5	2	1	1	3	3	3	3	HEAT	repeats
Peptidase_MA_2	PF13485.1	gi|408406094|ref|YP_006864078.1|	-	5.1e-17	62.1	1.3	1e-16	61.1	0.9	1.5	1	0	0	1	1	1	1	Peptidase	MA	superfamily
HEAT_PBS	PF03130.11	gi|408406094|ref|YP_006864078.1|	-	1.7e-14	52.7	14.1	0.036	14.5	0.8	6.7	6	0	0	6	6	6	4	PBS	lyase	HEAT-like	repeat
HEAT	PF02985.17	gi|408406094|ref|YP_006864078.1|	-	1.3e-07	31.0	2.1	1.3	9.2	0.1	5.4	5	0	0	5	5	5	2	HEAT	repeat
HEAT_EZ	PF13513.1	gi|408406094|ref|YP_006864078.1|	-	0.014	15.8	7.7	0.19	12.2	0.1	4.3	2	2	3	5	5	5	0	HEAT-like	repeat
Abhydrolase_6	PF12697.2	gi|408406095|ref|YP_006864079.1|	-	1.4e-41	142.9	0.0	1.5e-41	142.7	0.0	1.0	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_1	PF00561.15	gi|408406095|ref|YP_006864079.1|	-	1.3e-21	77.2	0.0	3.7e-20	72.4	0.0	2.0	1	1	0	1	1	1	1	alpha/beta	hydrolase	fold
Abhydrolase_5	PF12695.2	gi|408406095|ref|YP_006864079.1|	-	1.1e-20	73.8	0.0	1.2e-19	70.5	0.0	2.0	1	1	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_2	PF02230.11	gi|408406095|ref|YP_006864079.1|	-	0.00087	18.7	0.2	1.8	7.9	0.0	3.0	2	1	1	3	3	3	1	Phospholipase/Carboxylesterase
Ndr	PF03096.9	gi|408406095|ref|YP_006864079.1|	-	0.0011	17.5	0.0	0.0033	15.9	0.0	2.0	1	1	0	1	1	1	1	Ndr	family
UPF0227	PF05728.7	gi|408406095|ref|YP_006864079.1|	-	0.0014	18.3	0.0	0.0028	17.4	0.0	1.7	1	1	0	1	1	1	1	Uncharacterised	protein	family	(UPF0227)
BAAT_C	PF08840.6	gi|408406095|ref|YP_006864079.1|	-	0.002	17.8	0.0	0.019	14.6	0.0	2.0	1	1	0	1	1	1	1	BAAT	/	Acyl-CoA	thioester	hydrolase	C	terminal
Hydrolase_4	PF12146.3	gi|408406095|ref|YP_006864079.1|	-	0.0032	17.2	0.0	0.0062	16.3	0.0	1.4	1	0	0	1	1	1	1	Putative	lysophospholipase
Abhydrolase_3	PF07859.8	gi|408406095|ref|YP_006864079.1|	-	0.0041	16.7	0.1	0.0064	16.0	0.0	1.5	1	1	0	1	1	1	1	alpha/beta	hydrolase	fold
Peptidase_S9	PF00326.16	gi|408406095|ref|YP_006864079.1|	-	0.0064	15.7	0.0	1.7	7.7	0.0	2.3	1	1	1	2	2	2	2	Prolyl	oligopeptidase	family
Esterase	PF00756.15	gi|408406095|ref|YP_006864079.1|	-	0.013	14.9	0.0	0.02	14.3	0.0	1.2	1	0	0	1	1	1	0	Putative	esterase
DLH	PF01738.13	gi|408406095|ref|YP_006864079.1|	-	0.017	14.4	0.0	0.93	8.7	0.0	2.2	2	0	0	2	2	2	0	Dienelactone	hydrolase	family
PGAP1	PF07819.8	gi|408406095|ref|YP_006864079.1|	-	0.018	14.6	0.4	0.29	10.6	0.2	2.2	1	1	0	1	1	1	0	PGAP1-like	protein
Thioesterase	PF00975.15	gi|408406095|ref|YP_006864079.1|	-	0.033	14.4	0.0	0.075	13.2	0.0	1.6	1	1	0	1	1	1	0	Thioesterase	domain
DUF2305	PF10230.4	gi|408406095|ref|YP_006864079.1|	-	0.055	12.8	0.0	0.12	11.7	0.0	1.7	1	1	0	1	1	1	0	Uncharacterised	conserved	protein	(DUF2305)
DUF2048	PF09752.4	gi|408406095|ref|YP_006864079.1|	-	0.14	11.0	0.0	0.21	10.4	0.0	1.2	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2048)
DUF2920	PF11144.3	gi|408406095|ref|YP_006864079.1|	-	0.16	10.9	0.0	2.5	7.0	0.0	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2920)
Acetyltransf_1	PF00583.19	gi|408406096|ref|YP_006864080.1|	-	1.1e-16	60.5	0.0	3.4e-16	59.0	0.0	1.8	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	family
Acetyltransf_3	PF13302.1	gi|408406096|ref|YP_006864080.1|	-	6e-09	36.2	0.1	2.7e-08	34.1	0.0	2.1	2	1	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.1	gi|408406096|ref|YP_006864080.1|	-	1.6e-08	34.4	0.0	3e-08	33.5	0.0	1.6	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.1	gi|408406096|ref|YP_006864080.1|	-	6.2e-07	29.4	0.0	1.7e-06	28.1	0.0	1.8	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.1	gi|408406096|ref|YP_006864080.1|	-	2e-06	27.8	0.0	0.00026	21.1	0.0	2.3	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.1	gi|408406096|ref|YP_006864080.1|	-	0.00044	20.2	0.0	0.0034	17.3	0.0	2.2	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.5	gi|408406096|ref|YP_006864080.1|	-	0.00079	19.1	0.0	0.0015	18.2	0.0	1.3	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_8	PF13523.1	gi|408406096|ref|YP_006864080.1|	-	0.044	13.6	0.0	0.077	12.8	0.0	1.4	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Acetyltransf_13	PF13880.1	gi|408406096|ref|YP_006864080.1|	-	0.048	13.4	0.0	0.16	11.7	0.0	1.9	1	0	0	1	1	1	0	ESCO1/2	acetyl-transferase
Acetyltransf_6	PF13480.1	gi|408406096|ref|YP_006864080.1|	-	0.087	12.7	0.0	0.17	11.8	0.0	1.4	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
dCMP_cyt_deam_1	PF00383.17	gi|408406098|ref|YP_006864082.1|	-	1.6e-24	85.4	0.6	2.1e-24	85.1	0.4	1.1	1	0	0	1	1	1	1	Cytidine	and	deoxycytidylate	deaminase	zinc-binding	region
MafB19-deam	PF14437.1	gi|408406098|ref|YP_006864082.1|	-	0.0037	16.8	0.2	0.0052	16.4	0.1	1.2	1	0	0	1	1	1	1	MafB19-like	deaminase
APOBEC_N	PF08210.6	gi|408406098|ref|YP_006864082.1|	-	0.0055	16.3	0.1	0.0081	15.7	0.1	1.2	1	0	0	1	1	1	1	APOBEC-like	N-terminal	domain
XOO_2897-deam	PF14440.1	gi|408406098|ref|YP_006864082.1|	-	0.011	15.4	0.0	0.013	15.1	0.0	1.3	1	0	0	1	1	1	0	Xanthomonas	XOO_2897-like	deaminase
DNA_pol_B_thumb	PF14791.1	gi|408406101|ref|YP_006864085.1|	-	1.3e-24	85.6	0.1	3.1e-24	84.4	0.0	1.7	1	0	0	1	1	1	1	DNA	polymerase	beta	thumb
HHH_8	PF14716.1	gi|408406101|ref|YP_006864085.1|	-	1.1e-15	57.5	1.1	8.3e-15	54.7	0.1	2.9	3	0	0	3	3	3	1	Helix-hairpin-helix	domain
HHH_5	PF14520.1	gi|408406101|ref|YP_006864085.1|	-	7.3e-11	42.0	3.4	3.2e-06	27.1	0.1	3.9	4	0	0	4	4	4	2	Helix-hairpin-helix	domain
PHP	PF02811.14	gi|408406101|ref|YP_006864085.1|	-	2.4e-09	37.1	0.4	9e-09	35.3	0.1	2.1	2	1	0	2	2	2	1	PHP	domain
HHH	PF00633.18	gi|408406101|ref|YP_006864085.1|	-	0.00033	20.1	0.5	0.01	15.4	0.0	2.9	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
DNA_pol_B_palm	PF14792.1	gi|408406101|ref|YP_006864085.1|	-	0.00071	19.6	0.0	0.0018	18.2	0.0	1.6	1	0	0	1	1	1	1	DNA	polymerase	beta	palm
HHH_2	PF12826.2	gi|408406101|ref|YP_006864085.1|	-	0.0092	15.8	0.2	0.7	9.8	0.0	2.9	3	0	0	3	3	3	1	Helix-hairpin-helix	motif
DNA_pol_lambd_f	PF10391.4	gi|408406101|ref|YP_006864085.1|	-	0.019	14.4	0.0	0.13	11.8	0.0	2.5	3	0	0	3	3	3	0	Fingers	domain	of	DNA	polymerase	lambda
DUF4179	PF13786.1	gi|408406102|ref|YP_006864086.1|	-	0.2	11.8	0.7	3.2	8.0	0.0	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4179)
DUF4234	PF14018.1	gi|408406102|ref|YP_006864086.1|	-	2.3	8.0	13.3	0.34	10.6	0.5	2.9	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4234)
Pyr_redox_2	PF07992.9	gi|408406103|ref|YP_006864087.1|	-	6.9e-18	65.2	0.0	9.1e-18	64.8	0.0	1.2	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.22	gi|408406103|ref|YP_006864087.1|	-	1.2e-06	28.8	0.0	0.059	13.7	0.0	2.7	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.1	gi|408406103|ref|YP_006864087.1|	-	6.6e-06	26.3	0.0	0.042	13.9	0.1	3.3	3	0	0	3	3	3	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.1	gi|408406103|ref|YP_006864087.1|	-	0.00034	20.5	0.1	0.00078	19.4	0.0	1.6	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
NAD_binding_9	PF13454.1	gi|408406103|ref|YP_006864087.1|	-	0.0022	17.7	0.1	0.43	10.3	0.0	2.7	2	1	1	3	3	3	1	FAD-NAD(P)-binding
FAD_binding_2	PF00890.19	gi|408406103|ref|YP_006864087.1|	-	0.0035	16.2	0.0	0.018	13.8	0.0	2.1	2	1	1	3	3	3	1	FAD	binding	domain
DAO	PF01266.19	gi|408406103|ref|YP_006864087.1|	-	0.0048	15.8	0.0	0.094	11.5	0.0	2.1	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
HI0933_like	PF03486.9	gi|408406103|ref|YP_006864087.1|	-	0.017	13.5	0.0	1.7	7.0	0.0	2.9	3	0	0	3	3	3	0	HI0933-like	protein
Saccharop_dh	PF03435.13	gi|408406103|ref|YP_006864087.1|	-	0.061	12.2	0.0	0.1	11.5	0.0	1.3	1	0	0	1	1	1	0	Saccharopine	dehydrogenase
Thi4	PF01946.12	gi|408406103|ref|YP_006864087.1|	-	0.077	12.0	0.0	0.16	11.0	0.0	1.4	1	0	0	1	1	1	0	Thi4	family
Trp_halogenase	PF04820.9	gi|408406103|ref|YP_006864087.1|	-	0.093	11.3	0.0	0.9	8.0	0.0	2.0	2	0	0	2	2	2	0	Tryptophan	halogenase
Lycopene_cycl	PF05834.7	gi|408406103|ref|YP_006864087.1|	-	0.13	11.1	0.0	0.2	10.5	0.0	1.3	1	0	0	1	1	1	0	Lycopene	cyclase	protein
adh_short	PF00106.20	gi|408406105|ref|YP_006864089.1|	-	1.8e-38	132.0	1.5	2.2e-38	131.7	0.3	1.6	2	0	0	2	2	2	1	short	chain	dehydrogenase
adh_short_C2	PF13561.1	gi|408406105|ref|YP_006864089.1|	-	1.3e-19	70.9	0.8	1.7e-19	70.5	0.6	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
KR	PF08659.5	gi|408406105|ref|YP_006864089.1|	-	1.6e-13	50.6	0.2	2.8e-13	49.9	0.1	1.3	1	1	0	1	1	1	1	KR	domain
NAD_binding_10	PF13460.1	gi|408406105|ref|YP_006864089.1|	-	4.7e-07	30.0	1.5	1.5e-06	28.3	1.1	1.7	1	1	0	1	1	1	1	NADH(P)-binding
Epimerase	PF01370.16	gi|408406105|ref|YP_006864089.1|	-	2e-05	24.1	0.4	0.00023	20.7	0.3	2.1	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
THF_DHG_CYH_C	PF02882.14	gi|408406105|ref|YP_006864089.1|	-	0.013	14.5	0.3	0.087	11.9	0.0	2.2	1	1	0	2	2	2	0	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
Eno-Rase_NADH_b	PF12242.3	gi|408406105|ref|YP_006864089.1|	-	0.024	14.4	5.9	0.027	14.2	2.9	2.0	2	0	0	2	2	2	0	NAD(P)H	binding	domain	of	trans-2-enoyl-CoA	reductase
PulG	PF11773.3	gi|408406105|ref|YP_006864089.1|	-	0.038	13.7	1.0	0.21	11.3	0.2	2.1	2	0	0	2	2	2	0	Type	II	secretory	pathway	pseudopilin
Wax2_C	PF12076.3	gi|408406105|ref|YP_006864089.1|	-	0.085	12.5	0.3	0.21	11.3	0.0	1.7	2	0	0	2	2	2	0	WAX2	C-terminal	domain
DDE_Tnp_ISL3	PF01610.12	gi|408406106|ref|YP_006864090.1|	-	0.097	12.2	0.1	0.1	12.1	0.1	1.0	1	0	0	1	1	1	0	Transposase
Acyl_transf_3	PF01757.17	gi|408406107|ref|YP_006864091.1|	-	0.00023	20.1	1.1	0.00024	20.0	0.8	1.0	1	0	0	1	1	1	1	Acyltransferase	family
YajC	PF02699.10	gi|408406107|ref|YP_006864091.1|	-	0.046	13.4	0.1	0.046	13.4	0.1	2.3	3	0	0	3	3	3	0	Preprotein	translocase	subunit
CreD	PF06123.7	gi|408406107|ref|YP_006864091.1|	-	0.08	11.4	1.7	0.09	11.2	1.2	1.0	1	0	0	1	1	1	0	Inner	membrane	protein	CreD
MFS_1	PF07690.11	gi|408406107|ref|YP_006864091.1|	-	0.16	10.6	5.9	0.18	10.4	4.1	1.0	1	0	0	1	1	1	0	Major	Facilitator	Superfamily
RseC_MucC	PF04246.7	gi|408406107|ref|YP_006864091.1|	-	0.44	10.1	2.6	0.41	10.2	0.8	1.6	1	1	1	2	2	2	0	Positive	regulator	of	sigma(E),	RseC/MucC
FUSC	PF04632.7	gi|408406107|ref|YP_006864091.1|	-	0.7	8.2	3.0	0.79	8.0	2.1	1.0	1	0	0	1	1	1	0	Fusaric	acid	resistance	protein	family
YrhC	PF14143.1	gi|408406107|ref|YP_006864091.1|	-	1.7	8.6	6.9	1.1	9.2	1.3	2.0	1	1	1	2	2	2	0	YrhC-like	protein
PepSY_2	PF13670.1	gi|408406108|ref|YP_006864092.1|	-	0.056	13.3	0.2	9.9	6.1	0.0	2.3	1	1	1	2	2	2	0	Peptidase	propeptide	and	YPEB	domain
Gln-synt_C	PF00120.19	gi|408406109|ref|YP_006864093.1|	-	2.5e-90	302.1	0.0	3.2e-90	301.8	0.0	1.1	1	0	0	1	1	1	1	Glutamine	synthetase,	catalytic	domain
Gln-synt_N	PF03951.14	gi|408406109|ref|YP_006864093.1|	-	1.1e-24	85.8	0.0	4.7e-24	83.7	0.0	2.0	2	0	0	2	2	2	1	Glutamine	synthetase,	beta-Grasp	domain
ATP1G1_PLM_MAT8	PF02038.11	gi|408406110|ref|YP_006864094.1|	-	0.1	11.6	0.8	0.27	10.2	0.0	2.1	2	0	0	2	2	2	0	ATP1G1/PLM/MAT8	family
Rotamase	PF00639.16	gi|408406113|ref|YP_006864097.1|	-	2.2e-27	95.5	0.0	2.6e-27	95.3	0.0	1.1	1	0	0	1	1	1	1	PPIC-type	PPIASE	domain
Rotamase_3	PF13616.1	gi|408406113|ref|YP_006864097.1|	-	5.1e-27	94.4	0.0	5.7e-27	94.3	0.0	1.0	1	0	0	1	1	1	1	PPIC-type	PPIASE	domain
Rotamase_2	PF13145.1	gi|408406113|ref|YP_006864097.1|	-	2e-11	44.5	0.0	2.2e-11	44.4	0.0	1.0	1	0	0	1	1	1	1	PPIC-type	PPIASE	domain
HTH_38	PF13936.1	gi|408406113|ref|YP_006864097.1|	-	0.074	12.6	0.1	0.12	11.9	0.1	1.4	1	1	0	1	1	1	0	Helix-turn-helix	domain
DUF1638	PF07796.6	gi|408406115|ref|YP_006864099.1|	-	0.017	14.7	0.0	0.018	14.6	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1638)
MS_channel	PF00924.13	gi|408406116|ref|YP_006864100.1|	-	2.4e-14	53.1	4.2	2.4e-14	53.1	2.9	1.6	2	0	0	2	2	2	1	Mechanosensitive	ion	channel
RskA	PF10099.4	gi|408406116|ref|YP_006864100.1|	-	0.051	13.3	0.3	0.072	12.8	0.2	1.4	1	0	0	1	1	1	0	Anti-sigma-K	factor	rskA
HD_4	PF13328.1	gi|408406117|ref|YP_006864101.1|	-	3.1e-19	69.1	2.1	4.1e-19	68.7	1.4	1.1	1	0	0	1	1	1	1	HD	domain
HD	PF01966.17	gi|408406117|ref|YP_006864101.1|	-	0.00077	19.4	1.8	0.0014	18.6	1.1	1.6	1	1	0	1	1	1	1	HD	domain
DAO	PF01266.19	gi|408406117|ref|YP_006864101.1|	-	0.13	11.0	0.1	0.16	10.8	0.0	1.2	1	0	0	1	1	1	0	FAD	dependent	oxidoreductase
Spherulin4	PF12138.3	gi|408406118|ref|YP_006864102.1|	-	4.7e-35	121.2	0.6	4.7e-35	121.2	0.4	2.0	2	0	0	2	2	2	1	Spherulation-specific	family	4
Flg_new	PF09479.5	gi|408406118|ref|YP_006864102.1|	-	4.7e-05	23.3	11.7	0.24	11.4	0.4	5.0	4	0	0	4	4	4	2	Listeria-Bacteroides	repeat	domain	(List_Bact_rpt)
DUF824	PF05688.6	gi|408406118|ref|YP_006864102.1|	-	0.032	13.8	4.7	3.1	7.5	0.1	3.4	4	0	0	4	4	4	0	Salmonella	repeat	of	unknown	function	(DUF824)
Glyco_hydro_114	PF03537.8	gi|408406118|ref|YP_006864102.1|	-	0.15	11.9	2.7	23	4.8	0.1	3.7	4	0	0	4	4	4	0	Glycoside-hydrolase	family	GH114
FixQ	PF05545.6	gi|408406119|ref|YP_006864103.1|	-	0.41	10.3	2.9	0.66	9.6	2.0	1.3	1	0	0	1	1	1	0	Cbb3-type	cytochrome	oxidase	component	FixQ
DnaJ	PF00226.26	gi|408406120|ref|YP_006864104.1|	-	3.9e-24	84.1	1.2	5.9e-24	83.5	0.8	1.3	1	0	0	1	1	1	1	DnaJ	domain
Fer4_15	PF13459.1	gi|408406120|ref|YP_006864104.1|	-	1.6e-07	31.7	3.5	1.6e-07	31.7	2.4	1.8	2	0	0	2	2	2	1	4Fe-4S	single	cluster	domain
Fer4_13	PF13370.1	gi|408406120|ref|YP_006864104.1|	-	3.9e-06	27.1	3.2	1.1e-05	25.7	2.2	1.8	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_19	PF06902.6	gi|408406120|ref|YP_006864104.1|	-	7.4e-06	25.7	0.9	1.7e-05	24.5	0.6	1.6	1	0	0	1	1	1	1	Divergent	4Fe-4S	mono-cluster
Fer4_7	PF12838.2	gi|408406120|ref|YP_006864104.1|	-	0.027	14.8	1.7	5.1	7.5	0.0	2.9	1	1	2	3	3	3	0	4Fe-4S	dicluster	domain
Trypan_PARP	PF05887.6	gi|408406120|ref|YP_006864104.1|	-	0.12	12.2	2.3	0.17	11.7	1.6	1.3	1	0	0	1	1	1	0	Procyclic	acidic	repetitive	protein	(PARP)
TP_methylase	PF00590.15	gi|408406121|ref|YP_006864105.1|	-	3.4e-49	167.3	0.1	3.9e-49	167.2	0.1	1.0	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
TP_methylase	PF00590.15	gi|408406122|ref|YP_006864106.1|	-	2.8e-45	154.6	0.3	3.9e-45	154.1	0.2	1.2	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
Radical_SAM	PF04055.16	gi|408406122|ref|YP_006864106.1|	-	0.018	15.2	0.0	0.051	13.7	0.0	1.7	1	1	0	1	1	1	0	Radical	SAM	superfamily
Snf7	PF03357.16	gi|408406123|ref|YP_006864107.1|	-	0.0033	16.8	0.6	0.0033	16.8	0.4	1.7	2	0	0	2	2	2	1	Snf7
GHMP_kinases_C	PF08544.8	gi|408406123|ref|YP_006864107.1|	-	0.036	14.2	0.1	0.4	10.8	0.0	2.4	2	0	0	2	2	2	0	GHMP	kinases	C	terminal
CENP-F_leu_zip	PF10473.4	gi|408406123|ref|YP_006864107.1|	-	0.15	11.8	1.6	0.42	10.4	1.2	1.7	1	1	0	1	1	1	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
Glyoxalase_2	PF12681.2	gi|408406126|ref|YP_006864110.1|	-	5.3e-18	65.6	0.0	6.2e-18	65.3	0.0	1.1	1	0	0	1	1	1	1	Glyoxalase-like	domain
Glyoxalase	PF00903.20	gi|408406126|ref|YP_006864110.1|	-	1.1e-14	54.5	0.0	1.4e-14	54.1	0.0	1.1	1	0	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_4	PF13669.1	gi|408406126|ref|YP_006864110.1|	-	0.066	13.2	0.0	2	8.4	0.0	2.1	1	1	0	1	1	1	0	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
DUF1264	PF06884.6	gi|408406129|ref|YP_006864113.1|	-	5.7e-21	74.7	0.0	7.1e-21	74.3	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1264)
DUF2517	PF10725.4	gi|408406130|ref|YP_006864114.1|	-	0.059	13.0	0.1	0.084	12.5	0.1	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2517)
DUF2371	PF10177.4	gi|408406130|ref|YP_006864114.1|	-	0.098	12.5	0.4	0.12	12.1	0.3	1.2	1	0	0	1	1	1	0	Uncharacterised	conserved	protein	(DUF2371)
SKG6	PF08693.5	gi|408406130|ref|YP_006864114.1|	-	1.2	8.5	5.7	0.27	10.5	0.4	2.1	2	0	0	2	2	2	0	Transmembrane	alpha-helix	domain
DUF3270	PF11674.3	gi|408406133|ref|YP_006864117.1|	-	0.0023	17.8	2.1	0.0028	17.6	1.4	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3270)
EcsB	PF05975.7	gi|408406133|ref|YP_006864117.1|	-	0.017	13.6	1.7	0.018	13.5	1.2	1.0	1	0	0	1	1	1	0	Bacterial	ABC	transporter	protein	EcsB
EmrE	PF13536.1	gi|408406133|ref|YP_006864117.1|	-	0.018	15.2	2.3	0.021	14.9	1.6	1.1	1	0	0	1	1	1	0	Multidrug	resistance	efflux	transporter
Tic20	PF09685.5	gi|408406133|ref|YP_006864117.1|	-	0.022	14.7	1.7	0.027	14.4	1.2	1.1	1	0	0	1	1	1	0	Tic20-like	protein
YwiC	PF14256.1	gi|408406133|ref|YP_006864117.1|	-	0.026	14.6	1.4	0.028	14.5	1.0	1.0	1	0	0	1	1	1	0	YwiC-like	protein
Reticulon	PF02453.12	gi|408406133|ref|YP_006864117.1|	-	0.12	11.9	2.0	0.15	11.6	1.4	1.1	1	0	0	1	1	1	0	Reticulon
DUF2244	PF10003.4	gi|408406133|ref|YP_006864117.1|	-	0.12	11.7	2.3	0.15	11.4	1.6	1.1	1	0	0	1	1	1	0	Integral	membrane	protein	(DUF2244)
DUF2207	PF09972.4	gi|408406133|ref|YP_006864117.1|	-	0.26	9.8	2.2	0.27	9.7	1.5	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
TMEM154	PF15102.1	gi|408406133|ref|YP_006864117.1|	-	0.28	10.9	3.4	2.4	7.8	2.4	1.9	1	1	0	1	1	1	0	TMEM154	protein	family
DUF202	PF02656.10	gi|408406133|ref|YP_006864117.1|	-	0.39	10.9	4.6	10	6.4	3.2	2.0	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF202)
SdpI	PF13630.1	gi|408406133|ref|YP_006864117.1|	-	0.63	9.7	7.0	0.9	9.2	4.9	1.2	1	0	0	1	1	1	0	SdpI/YhfL	protein	family
Vpu	PF00558.14	gi|408406133|ref|YP_006864117.1|	-	2.3	7.8	8.2	7.4	6.2	5.7	1.8	1	1	0	1	1	1	0	Vpu	protein
Oleosin	PF01277.12	gi|408406133|ref|YP_006864117.1|	-	9.2	5.8	7.6	12	5.5	5.3	1.1	1	0	0	1	1	1	0	Oleosin
DUF3892	PF13031.1	gi|408406134|ref|YP_006864118.1|	-	1.2e-08	35.1	0.2	1.7e-08	34.7	0.1	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3892)
CarD_CdnL_TRCF	PF02559.11	gi|408406134|ref|YP_006864118.1|	-	0.0036	17.3	0.3	0.0081	16.1	0.2	1.6	1	1	1	2	2	2	1	CarD-like/TRCF	domain
MgtC	PF02308.11	gi|408406135|ref|YP_006864119.1|	-	4e-29	101.1	4.8	4.7e-29	100.9	3.4	1.0	1	0	0	1	1	1	1	MgtC	family
DUF4536	PF15055.1	gi|408406135|ref|YP_006864119.1|	-	0.012	15.7	0.4	0.034	14.2	0.3	1.8	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4536)
EI24	PF07264.6	gi|408406135|ref|YP_006864119.1|	-	0.043	13.2	0.4	0.053	12.9	0.3	1.3	1	1	0	1	1	1	0	Etoposide-induced	protein	2.4	(EI24)
DUF2339	PF10101.4	gi|408406135|ref|YP_006864119.1|	-	0.49	8.6	6.2	0.57	8.3	4.3	1.2	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2339)
AsnC_trans_reg	PF01037.16	gi|408406136|ref|YP_006864120.1|	-	2.2e-14	52.9	0.2	2.7e-14	52.6	0.1	1.1	1	0	0	1	1	1	1	AsnC	family
GYD	PF08734.6	gi|408406136|ref|YP_006864120.1|	-	0.011	15.4	0.0	0.013	15.2	0.0	1.1	1	0	0	1	1	1	0	GYD	domain
TIP120	PF08623.5	gi|408406136|ref|YP_006864120.1|	-	0.016	14.7	0.5	0.018	14.6	0.3	1.0	1	0	0	1	1	1	0	TATA-binding	protein	interacting	(TIP20)
Arf	PF00025.16	gi|408406136|ref|YP_006864120.1|	-	0.023	13.9	0.1	0.028	13.6	0.1	1.0	1	0	0	1	1	1	0	ADP-ribosylation	factor	family
NapD	PF03927.8	gi|408406136|ref|YP_006864120.1|	-	0.04	13.7	0.3	0.12	12.1	0.2	1.7	1	1	0	1	1	1	0	NapD	protein
HisG	PF01634.13	gi|408406136|ref|YP_006864120.1|	-	0.059	12.9	0.1	0.066	12.7	0.1	1.2	1	0	0	1	1	1	0	ATP	phosphoribosyltransferase
INT_SG_DDX_CT_C	PF15300.1	gi|408406136|ref|YP_006864120.1|	-	0.095	12.1	0.1	1.6	8.2	0.1	2.1	2	0	0	2	2	2	0	INTS6/SAGE1/DDX26B/CT45	C-terminus
Asp_Glu_race	PF01177.17	gi|408406137|ref|YP_006864121.1|	-	9.6e-29	100.8	0.0	1.3e-28	100.4	0.0	1.2	1	0	0	1	1	1	1	Asp/Glu/Hydantoin	racemase
Prenyltransf	PF01255.14	gi|408406138|ref|YP_006864122.1|	-	2.2e-77	259.1	0.3	2.5e-77	258.9	0.2	1.0	1	0	0	1	1	1	1	Putative	undecaprenyl	diphosphate	synthase
FAD_binding_1	PF00667.15	gi|408406138|ref|YP_006864122.1|	-	0.014	14.8	0.4	0.37	10.1	0.2	2.0	2	0	0	2	2	2	0	FAD	binding	domain
PepSY	PF03413.14	gi|408406139|ref|YP_006864123.1|	-	3.3e-06	27.6	0.0	0.00056	20.4	0.0	3.0	3	0	0	3	3	3	2	Peptidase	propeptide	and	YPEB	domain
DUF230	PF03003.11	gi|408406140|ref|YP_006864124.1|	-	0.00018	21.0	0.0	14	5.1	0.0	4.1	2	2	2	4	4	4	2	Poxvirus	proteins	of	unknown	function
Filamin	PF00630.14	gi|408406140|ref|YP_006864124.1|	-	0.00089	19.7	1.7	0.21	12.1	0.1	3.0	3	0	0	3	3	3	2	Filamin/ABP280	repeat
SecB	PF02556.9	gi|408406140|ref|YP_006864124.1|	-	0.16	11.6	0.0	9.9	5.7	0.0	2.3	2	0	0	2	2	2	0	Preprotein	translocase	subunit	SecB
GSDH	PF07995.6	gi|408406142|ref|YP_006864126.1|	-	3.6e-51	174.1	0.0	4.4e-51	173.9	0.0	1.1	1	0	0	1	1	1	1	Glucose	/	Sorbosone	dehydrogenase
PQQ_3	PF13570.1	gi|408406142|ref|YP_006864126.1|	-	0.23	11.7	3.2	22	5.4	0.1	3.3	3	0	0	3	3	3	0	PQQ-like	domain
DUF2231	PF09990.4	gi|408406143|ref|YP_006864127.1|	-	0.03	14.6	1.8	0.051	13.9	1.3	1.4	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2231)
PBP_like_2	PF12849.2	gi|408406144|ref|YP_006864128.1|	-	3.6e-21	75.8	1.9	5.7e-21	75.2	1.2	1.3	1	1	0	1	1	1	1	PBP	superfamily	domain
PBP_like	PF12727.2	gi|408406144|ref|YP_006864128.1|	-	0.021	13.8	0.0	0.031	13.2	0.0	1.3	1	0	0	1	1	1	0	PBP	superfamily	domain
DUF4367	PF14285.1	gi|408406148|ref|YP_006864132.1|	-	0.11	11.7	0.1	0.13	11.5	0.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4367)
NAD_synthase	PF02540.12	gi|408406149|ref|YP_006864133.1|	-	2.4e-76	255.8	0.0	2.7e-76	255.6	0.0	1.0	1	0	0	1	1	1	1	NAD	synthase
tRNA_Me_trans	PF03054.11	gi|408406149|ref|YP_006864133.1|	-	3.9e-06	25.6	0.0	0.0032	16.0	0.0	2.3	2	0	0	2	2	2	2	tRNA	methyl	transferase
Asn_synthase	PF00733.16	gi|408406149|ref|YP_006864133.1|	-	3e-05	23.6	0.0	4.9e-05	22.9	0.0	1.3	1	0	0	1	1	1	1	Asparagine	synthase
QueC	PF06508.8	gi|408406149|ref|YP_006864133.1|	-	0.00089	18.5	0.0	0.0023	17.2	0.0	1.6	2	0	0	2	2	2	1	Queuosine	biosynthesis	protein	QueC
HTH_23	PF13384.1	gi|408406149|ref|YP_006864133.1|	-	0.018	14.6	0.0	0.26	11.0	0.0	2.7	3	0	0	3	3	3	0	Homeodomain-like	domain
ATP_bind_3	PF01171.15	gi|408406149|ref|YP_006864133.1|	-	0.13	11.7	0.0	0.26	10.7	0.0	1.6	2	0	0	2	2	2	0	PP-loop	family
DUF4242	PF14026.1	gi|408406150|ref|YP_006864134.1|	-	5.5e-12	45.6	0.0	9.4e-12	44.8	0.0	1.4	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF4242)
PLDc_2	PF13091.1	gi|408406151|ref|YP_006864135.1|	-	0.015	15.0	1.8	0.2	11.3	0.3	2.6	2	2	0	2	2	2	0	PLD-like	domain
Regulator_TrmB	PF11495.3	gi|408406151|ref|YP_006864135.1|	-	0.015	14.2	0.7	0.047	12.6	0.3	1.9	2	0	0	2	2	2	0	Archaeal	transcriptional	regulator	TrmB
Arc_trans_TRASH	PF08394.5	gi|408406152|ref|YP_006864136.1|	-	0.0086	16.2	0.2	0.013	15.6	0.2	1.3	1	0	0	1	1	1	1	Archaeal	TRASH	domain
Noggin	PF05806.7	gi|408406152|ref|YP_006864136.1|	-	0.1	11.8	0.0	0.1	11.8	0.0	1.0	1	0	0	1	1	1	0	Noggin
KaiC	PF06745.8	gi|408406153|ref|YP_006864137.1|	-	3.1e-15	55.9	0.0	5.9e-15	54.9	0.0	1.3	1	0	0	1	1	1	1	KaiC
GvpD	PF07088.6	gi|408406153|ref|YP_006864137.1|	-	4.4e-07	28.5	0.0	5.8e-07	28.1	0.0	1.3	1	0	0	1	1	1	1	GvpD	gas	vesicle	protein
Guanylate_cyc	PF00211.15	gi|408406153|ref|YP_006864137.1|	-	2.1e-06	27.2	0.0	4.8e-06	26.0	0.0	1.5	1	0	0	1	1	1	1	Adenylate	and	Guanylate	cyclase	catalytic	domain
AAA_22	PF13401.1	gi|408406153|ref|YP_006864137.1|	-	0.0041	17.2	0.0	0.011	15.8	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_25	PF13481.1	gi|408406153|ref|YP_006864137.1|	-	0.0072	15.7	0.4	0.033	13.5	0.1	2.2	2	1	0	2	2	2	1	AAA	domain
Arch_ATPase	PF01637.13	gi|408406153|ref|YP_006864137.1|	-	0.011	15.3	0.0	0.018	14.7	0.0	1.2	1	0	0	1	1	1	0	Archaeal	ATPase
AAA	PF00004.24	gi|408406153|ref|YP_006864137.1|	-	0.021	15.0	0.0	0.056	13.6	0.0	1.7	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
UPF0079	PF02367.12	gi|408406153|ref|YP_006864137.1|	-	0.03	13.9	0.1	0.058	13.0	0.0	1.4	1	0	0	1	1	1	0	Uncharacterised	P-loop	hydrolase	UPF0079
AAA_19	PF13245.1	gi|408406153|ref|YP_006864137.1|	-	0.042	13.5	0.0	0.11	12.2	0.0	1.7	1	0	0	1	1	1	0	Part	of	AAA	domain
AAA_16	PF13191.1	gi|408406153|ref|YP_006864137.1|	-	0.052	13.5	0.1	0.11	12.4	0.1	1.6	1	1	0	1	1	1	0	AAA	ATPase	domain
MEDS	PF14417.1	gi|408406153|ref|YP_006864137.1|	-	0.13	11.2	0.0	0.28	10.2	0.0	1.5	1	1	0	1	1	1	0	MEDS:	MEthanogen/methylotroph,	DcmR	Sensory	domain
CbiA	PF01656.18	gi|408406154|ref|YP_006864138.1|	-	9e-23	80.7	0.0	1.2e-22	80.2	0.0	1.1	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.1	gi|408406154|ref|YP_006864138.1|	-	1.2e-11	44.8	0.3	1.4e-09	38.0	0.0	2.4	3	0	0	3	3	3	1	AAA	domain
MipZ	PF09140.6	gi|408406154|ref|YP_006864138.1|	-	6.3e-09	35.2	0.0	3.2e-07	29.7	0.0	2.1	2	0	0	2	2	2	1	ATPase	MipZ
ArsA_ATPase	PF02374.10	gi|408406154|ref|YP_006864138.1|	-	2.9e-07	29.8	0.0	4.8e-07	29.1	0.0	1.3	1	0	0	1	1	1	1	Anion-transporting	ATPase
Fer4_NifH	PF00142.13	gi|408406154|ref|YP_006864138.1|	-	1.5e-05	24.3	0.0	0.002	17.3	0.0	2.2	2	0	0	2	2	2	1	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
VirC1	PF07015.6	gi|408406154|ref|YP_006864138.1|	-	7.5e-05	21.9	0.0	0.00017	20.7	0.0	1.6	2	0	0	2	2	2	1	VirC1	protein
AAA_17	PF13207.1	gi|408406154|ref|YP_006864138.1|	-	0.002	18.9	0.1	0.0048	17.6	0.0	1.6	1	1	0	1	1	1	1	AAA	domain
SRP54	PF00448.17	gi|408406154|ref|YP_006864138.1|	-	0.0036	16.7	0.1	0.013	14.9	0.0	1.8	2	0	0	2	2	2	1	SRP54-type	protein,	GTPase	domain
ATP_bind_1	PF03029.12	gi|408406154|ref|YP_006864138.1|	-	0.005	16.4	0.0	0.015	14.8	0.0	1.7	1	1	0	1	1	1	1	Conserved	hypothetical	ATP	binding	protein
APS_kinase	PF01583.15	gi|408406154|ref|YP_006864138.1|	-	0.0071	16.0	0.0	0.012	15.2	0.0	1.3	1	0	0	1	1	1	1	Adenylylsulphate	kinase
AAA_18	PF13238.1	gi|408406154|ref|YP_006864138.1|	-	0.041	14.1	0.1	0.14	12.4	0.0	1.9	1	1	0	1	1	1	0	AAA	domain
AAA_25	PF13481.1	gi|408406154|ref|YP_006864138.1|	-	0.045	13.1	0.8	0.1	11.9	0.5	1.8	1	1	0	1	1	1	0	AAA	domain
MobB	PF03205.9	gi|408406154|ref|YP_006864138.1|	-	0.057	13.1	0.0	0.37	10.4	0.0	2.1	2	0	0	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_19	PF13245.1	gi|408406154|ref|YP_006864138.1|	-	0.09	12.5	0.1	0.21	11.3	0.0	1.5	1	0	0	1	1	1	0	Part	of	AAA	domain
LpxK	PF02606.9	gi|408406154|ref|YP_006864138.1|	-	0.14	11.0	0.1	0.23	10.3	0.0	1.2	1	0	0	1	1	1	0	Tetraacyldisaccharide-1-P	4'-kinase
Thymidylate_kin	PF02223.12	gi|408406154|ref|YP_006864138.1|	-	0.14	11.4	0.1	1.2	8.4	0.0	2.0	2	0	0	2	2	2	0	Thymidylate	kinase
MMPL	PF03176.10	gi|408406156|ref|YP_006864140.1|	-	0.9	8.1	13.3	2.2	6.9	9.2	1.6	1	0	0	1	1	1	0	MMPL	family
APS_kinase	PF01583.15	gi|408406157|ref|YP_006864141.1|	-	9.3e-20	70.8	0.2	1.1e-19	70.6	0.1	1.0	1	0	0	1	1	1	1	Adenylylsulphate	kinase
N6_N4_Mtase	PF01555.13	gi|408406158|ref|YP_006864142.1|	-	1.4e-23	83.6	0.1	1.2e-15	57.6	0.0	2.1	2	0	0	2	2	2	2	DNA	methylase
Dev_Cell_Death	PF10539.4	gi|408406158|ref|YP_006864142.1|	-	1.2e-16	60.4	0.0	2e-16	59.7	0.0	1.3	1	0	0	1	1	1	1	Development	and	cell	death	domain
Methyltransf_26	PF13659.1	gi|408406158|ref|YP_006864142.1|	-	1.8e-10	40.8	0.0	5.8e-10	39.2	0.0	1.8	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.7	gi|408406158|ref|YP_006864142.1|	-	5e-06	26.9	0.0	0.00017	22.0	0.0	2.4	1	1	0	1	1	1	1	Methyltransferase	domain
UPF0020	PF01170.13	gi|408406158|ref|YP_006864142.1|	-	9.9e-06	25.2	0.0	0.054	13.0	0.0	2.3	2	0	0	2	2	2	2	Putative	RNA	methylase	family	UPF0020
Methyltransf_8	PF05148.10	gi|408406158|ref|YP_006864142.1|	-	0.00096	18.8	0.0	0.0038	16.9	0.0	1.9	2	0	0	2	2	2	1	Hypothetical	methyltransferase
Cons_hypoth95	PF03602.10	gi|408406158|ref|YP_006864142.1|	-	0.15	11.4	0.0	3.4	7.0	0.0	2.2	2	0	0	2	2	2	0	Conserved	hypothetical	protein	95
BacA	PF02673.13	gi|408406159|ref|YP_006864143.1|	-	1.1e-65	221.3	15.2	1.3e-65	221.1	10.5	1.0	1	0	0	1	1	1	1	Bacitracin	resistance	protein	BacA
PhoU	PF01895.14	gi|408406160|ref|YP_006864144.1|	-	1.6e-21	76.5	13.7	9.4e-16	58.0	0.5	2.6	2	0	0	2	2	2	2	PhoU	domain
Antitoxin-MazE	PF04014.13	gi|408406160|ref|YP_006864144.1|	-	0.0002	20.9	0.0	0.00061	19.4	0.0	1.8	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE
SpoIIID	PF12116.3	gi|408406160|ref|YP_006864144.1|	-	0.048	13.6	0.1	1.1	9.1	0.0	2.7	2	0	0	2	2	2	0	Stage	III	sporulation	protein	D
PhoU	PF01895.14	gi|408406161|ref|YP_006864145.1|	-	4.4e-05	23.8	0.1	7.7e-05	23.0	0.0	1.5	1	0	0	1	1	1	1	PhoU	domain
E2F_TDP	PF02319.15	gi|408406161|ref|YP_006864145.1|	-	0.083	12.4	0.0	0.16	11.5	0.0	1.6	1	0	0	1	1	1	0	E2F/DP	family	winged-helix	DNA-binding	domain
PBP_like_2	PF12849.2	gi|408406162|ref|YP_006864146.1|	-	8.4e-57	192.7	4.9	1.4e-56	192.0	3.4	1.3	1	0	0	1	1	1	1	PBP	superfamily	domain
SBP_bac_1	PF01547.20	gi|408406162|ref|YP_006864146.1|	-	5.4e-19	69.0	1.0	5.4e-19	69.0	0.7	1.7	2	0	0	2	2	2	1	Bacterial	extracellular	solute-binding	protein
PBP_like	PF12727.2	gi|408406162|ref|YP_006864146.1|	-	2.2e-09	36.5	0.0	7.3e-09	34.8	0.0	1.8	1	1	0	1	1	1	1	PBP	superfamily	domain
PBP_like_2	PF12849.2	gi|408406163|ref|YP_006864147.1|	-	0.00015	21.3	0.0	0.00016	21.2	0.0	1.0	1	0	0	1	1	1	1	PBP	superfamily	domain
SBP_bac_1	PF01547.20	gi|408406163|ref|YP_006864147.1|	-	0.027	14.2	0.0	0.04	13.6	0.0	1.3	1	1	0	1	1	1	0	Bacterial	extracellular	solute-binding	protein
PBP_like_2	PF12849.2	gi|408406164|ref|YP_006864148.1|	-	1.4e-11	44.3	0.0	1.5e-11	44.3	0.0	1.0	1	0	0	1	1	1	1	PBP	superfamily	domain
SBP_bac_1	PF01547.20	gi|408406164|ref|YP_006864148.1|	-	0.0032	17.2	0.0	0.0037	17.0	0.0	1.0	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
DUF859	PF05895.7	gi|408406164|ref|YP_006864148.1|	-	0.11	10.7	0.0	0.12	10.5	0.0	1.0	1	0	0	1	1	1	0	Siphovirus	protein	of	unknown	function	(DUF859)
PBP_like_2	PF12849.2	gi|408406165|ref|YP_006864149.1|	-	1.7e-12	47.4	0.4	2.4e-12	46.9	0.3	1.2	1	0	0	1	1	1	1	PBP	superfamily	domain
zf-HIT	PF04438.11	gi|408406166|ref|YP_006864150.1|	-	0.0045	16.6	4.7	0.0094	15.5	0.9	2.2	2	0	0	2	2	2	1	HIT	zinc	finger
DZR	PF12773.2	gi|408406166|ref|YP_006864150.1|	-	0.0073	16.1	7.6	0.029	14.1	5.3	1.9	1	1	0	1	1	1	1	Double	zinc	ribbon
zinc-ribbons_6	PF07191.7	gi|408406166|ref|YP_006864150.1|	-	0.02	14.6	1.6	0.02	14.6	1.1	2.0	1	1	1	2	2	2	0	zinc-ribbons
DUF2321	PF10083.4	gi|408406166|ref|YP_006864150.1|	-	0.11	11.9	3.5	0.47	9.9	2.5	1.7	1	1	1	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2321)
zf-C3HC4_2	PF13923.1	gi|408406166|ref|YP_006864150.1|	-	0.11	12.5	5.9	0.17	11.9	4.1	1.4	1	1	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
C1_2	PF03107.11	gi|408406166|ref|YP_006864150.1|	-	0.48	10.5	6.8	2.1	8.5	1.4	2.4	2	0	0	2	2	2	0	C1	domain
PHD_3	PF13922.1	gi|408406166|ref|YP_006864150.1|	-	0.6	10.3	9.0	0.57	10.4	5.6	1.7	1	1	0	1	1	1	0	PHD	domain	of	transcriptional	enhancer,	Asx
Flavi_propep	PF01570.12	gi|408406166|ref|YP_006864150.1|	-	0.78	9.5	4.9	0.97	9.2	1.0	1.9	1	1	1	2	2	2	0	Flavivirus	polyprotein	propeptide
zf-BED	PF02892.10	gi|408406166|ref|YP_006864150.1|	-	1.1	9.0	4.1	2.2	8.0	2.6	1.9	1	1	0	1	1	1	0	BED	zinc	finger
zf-ribbon_3	PF13248.1	gi|408406166|ref|YP_006864150.1|	-	5.1	6.4	9.1	1.6	8.0	1.5	2.7	1	1	2	3	3	3	0	zinc-ribbon	domain
zinc_ribbon_2	PF13240.1	gi|408406166|ref|YP_006864150.1|	-	5.3	6.6	6.6	27	4.4	0.0	3.2	3	0	0	3	3	3	0	zinc-ribbon	domain
HxlR	PF01638.12	gi|408406167|ref|YP_006864151.1|	-	1.2e-22	79.3	0.4	1.5e-22	79.0	0.3	1.1	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
HTH_34	PF13601.1	gi|408406167|ref|YP_006864151.1|	-	0.00084	19.3	0.0	0.0013	18.7	0.0	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
PadR	PF03551.9	gi|408406167|ref|YP_006864151.1|	-	0.0012	18.6	0.2	0.0017	18.0	0.2	1.3	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_20	PF12840.2	gi|408406167|ref|YP_006864151.1|	-	0.0034	17.1	0.0	0.0048	16.6	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.1	gi|408406167|ref|YP_006864151.1|	-	0.012	15.0	0.1	0.023	14.0	0.1	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_12	PF08461.5	gi|408406167|ref|YP_006864151.1|	-	0.056	13.1	0.5	0.18	11.5	0.1	2.1	1	1	1	2	2	2	0	Ribonuclease	R	winged-helix	domain
LexA_DNA_bind	PF01726.11	gi|408406167|ref|YP_006864151.1|	-	0.075	12.6	0.1	0.2	11.2	0.0	1.7	1	0	0	1	1	1	0	LexA	DNA	binding	domain
HTH_45	PF14947.1	gi|408406167|ref|YP_006864151.1|	-	0.088	12.6	0.2	0.17	11.7	0.0	1.6	2	0	0	2	2	2	0	Winged	helix-turn-helix
Methyltransf_31	PF13847.1	gi|408406168|ref|YP_006864152.1|	-	9.3e-34	116.2	0.1	1.3e-33	115.6	0.1	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.7	gi|408406168|ref|YP_006864152.1|	-	2.1e-20	73.0	0.0	4.6e-20	71.9	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|408406168|ref|YP_006864152.1|	-	1e-16	61.4	0.1	2.3e-16	60.3	0.1	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.13	gi|408406168|ref|YP_006864152.1|	-	2.4e-16	59.5	0.3	3.9e-16	58.8	0.2	1.3	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_25	PF13649.1	gi|408406168|ref|YP_006864152.1|	-	2.5e-13	50.2	0.0	4.9e-13	49.3	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|408406168|ref|YP_006864152.1|	-	9.5e-12	44.9	0.0	1.8e-11	44.0	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|408406168|ref|YP_006864152.1|	-	1e-11	44.8	0.0	1.6e-11	44.1	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|408406168|ref|YP_006864152.1|	-	2e-11	44.2	0.0	3.6e-11	43.4	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
PCMT	PF01135.14	gi|408406168|ref|YP_006864152.1|	-	2.9e-11	43.2	0.2	9.1e-11	41.6	0.1	1.7	1	1	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
PrmA	PF06325.8	gi|408406168|ref|YP_006864152.1|	-	3.9e-09	36.0	0.7	5.6e-09	35.5	0.5	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
MTS	PF05175.9	gi|408406168|ref|YP_006864152.1|	-	3.7e-08	32.9	0.0	5.8e-08	32.2	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_8	PF05148.10	gi|408406168|ref|YP_006864152.1|	-	6.3e-06	25.9	0.2	1.4e-05	24.8	0.0	1.6	2	0	0	2	2	2	1	Hypothetical	methyltransferase
Methyltransf_32	PF13679.1	gi|408406168|ref|YP_006864152.1|	-	5.5e-05	22.8	0.0	9.6e-05	22.0	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
DOT1	PF08123.8	gi|408406168|ref|YP_006864152.1|	-	0.00039	19.7	0.3	0.0014	17.9	0.2	1.8	1	1	0	1	1	1	1	Histone	methylation	protein	DOT1
CMAS	PF02353.15	gi|408406168|ref|YP_006864152.1|	-	0.00058	19.0	0.1	0.00076	18.6	0.0	1.2	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
UPF0020	PF01170.13	gi|408406168|ref|YP_006864152.1|	-	0.00069	19.2	0.0	0.00087	18.9	0.0	1.3	1	0	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
Methyltransf_24	PF13578.1	gi|408406168|ref|YP_006864152.1|	-	0.00074	20.3	0.0	0.0012	19.6	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_2	PF00891.13	gi|408406168|ref|YP_006864152.1|	-	0.0025	17.0	0.2	0.0045	16.2	0.1	1.3	1	1	0	1	1	1	1	O-methyltransferase
Methyltransf_9	PF08003.6	gi|408406168|ref|YP_006864152.1|	-	0.014	14.1	0.0	0.02	13.6	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1698)
Methyltransf_3	PF01596.12	gi|408406168|ref|YP_006864152.1|	-	0.028	13.4	0.1	0.044	12.8	0.0	1.3	1	1	0	1	1	1	0	O-methyltransferase
Methyltransf_15	PF09445.5	gi|408406168|ref|YP_006864152.1|	-	0.03	13.8	0.1	0.039	13.4	0.0	1.2	1	0	0	1	1	1	0	RNA	cap	guanine-N2	methyltransferase
Methyltransf_4	PF02390.12	gi|408406168|ref|YP_006864152.1|	-	0.056	12.4	0.0	0.17	10.9	0.0	1.7	2	0	0	2	2	2	0	Putative	methyltransferase
Methyltransf_29	PF03141.11	gi|408406168|ref|YP_006864152.1|	-	0.1	10.8	0.0	0.14	10.4	0.0	1.1	1	0	0	1	1	1	0	Putative	S-adenosyl-L-methionine-dependent	methyltransferase
Methyltransf_16	PF10294.4	gi|408406168|ref|YP_006864152.1|	-	0.12	11.8	0.4	0.2	11.0	0.1	1.4	1	1	0	1	1	1	0	Putative	methyltransferase
FtsJ	PF01728.14	gi|408406168|ref|YP_006864152.1|	-	0.12	12.2	0.0	0.19	11.6	0.0	1.5	1	0	0	1	1	1	0	FtsJ-like	methyltransferase
NNMT_PNMT_TEMT	PF01234.12	gi|408406168|ref|YP_006864152.1|	-	0.14	11.1	0.1	11	4.9	0.0	2.2	1	1	1	2	2	2	0	NNMT/PNMT/TEMT	family
LMWPc	PF01451.16	gi|408406169|ref|YP_006864153.1|	-	3.3e-27	95.5	0.0	5.1e-27	94.8	0.0	1.3	1	1	0	1	1	1	1	Low	molecular	weight	phosphotyrosine	protein	phosphatase
MIP	PF00230.15	gi|408406170|ref|YP_006864154.1|	-	7.7e-32	110.5	20.0	9.4e-32	110.2	13.9	1.0	1	0	0	1	1	1	1	Major	intrinsic	protein
Na_H_Exchanger	PF00999.16	gi|408406171|ref|YP_006864155.1|	-	4.9e-55	186.5	53.0	5.9e-55	186.3	36.7	1.0	1	0	0	1	1	1	1	Sodium/hydrogen	exchanger	family
DUF95	PF01944.12	gi|408406172|ref|YP_006864156.1|	-	1.2e-09	38.0	10.8	1.7e-09	37.5	7.5	1.2	1	0	0	1	1	1	1	Integral	membrane	protein	DUF95
DUF3810	PF12725.2	gi|408406172|ref|YP_006864156.1|	-	0.22	10.3	0.6	1.6	7.5	0.5	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3810)
TP_methylase	PF00590.15	gi|408406174|ref|YP_006864158.1|	-	2.2e-33	115.7	0.0	2.6e-33	115.5	0.0	1.0	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
AsnC_trans_reg	PF01037.16	gi|408406175|ref|YP_006864159.1|	-	1.7e-09	37.2	0.3	1.9e-09	37.1	0.2	1.0	1	0	0	1	1	1	1	AsnC	family
GYD	PF08734.6	gi|408406175|ref|YP_006864159.1|	-	0.0023	17.6	0.1	0.0027	17.3	0.1	1.2	1	0	0	1	1	1	1	GYD	domain
bPH_3	PF14470.1	gi|408406176|ref|YP_006864160.1|	-	0.002	18.3	0.1	0.0064	16.7	0.0	1.8	2	0	0	2	2	2	1	Bacterial	PH	domain
Fer4	PF00037.22	gi|408406177|ref|YP_006864161.1|	-	3.6e-11	42.1	10.3	4.1e-07	29.3	0.5	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.2	gi|408406177|ref|YP_006864161.1|	-	1e-09	38.6	4.3	1.3e-09	38.2	3.0	1.2	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|408406177|ref|YP_006864161.1|	-	3e-08	33.3	3.3	5.3e-08	32.5	2.4	1.4	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_6	PF12837.2	gi|408406177|ref|YP_006864161.1|	-	4.2e-08	32.7	9.4	3.6e-05	23.4	0.6	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_2	PF12797.2	gi|408406177|ref|YP_006864161.1|	-	2.2e-07	30.4	8.4	0.0031	17.3	0.5	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.1	gi|408406177|ref|YP_006864161.1|	-	8.5e-07	28.7	4.1	1.3e-06	28.1	2.9	1.3	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|408406177|ref|YP_006864161.1|	-	4.9e-06	26.7	5.5	1.5e-05	25.1	3.9	1.7	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_13	PF13370.1	gi|408406177|ref|YP_006864161.1|	-	7.7e-05	22.9	5.8	0.09	13.1	0.7	2.3	2	0	0	2	2	2	2	4Fe-4S	single	cluster	domain
Fer4_16	PF13484.1	gi|408406177|ref|YP_006864161.1|	-	0.0001	22.9	1.5	0.22	12.3	0.0	2.2	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_4	PF12800.2	gi|408406177|ref|YP_006864161.1|	-	0.00014	21.8	9.5	0.035	14.4	0.3	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_8	PF13183.1	gi|408406177|ref|YP_006864161.1|	-	0.00017	21.5	4.4	0.00048	20.1	3.1	1.6	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_15	PF13459.1	gi|408406177|ref|YP_006864161.1|	-	0.00018	22.0	9.8	0.024	15.1	6.8	2.7	1	1	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_3	PF12798.2	gi|408406177|ref|YP_006864161.1|	-	0.00054	20.3	14.0	0.073	13.6	0.8	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_17	PF13534.1	gi|408406177|ref|YP_006864161.1|	-	0.0016	18.7	6.3	0.034	14.4	4.4	2.1	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_18	PF13746.1	gi|408406177|ref|YP_006864161.1|	-	0.002	18.5	6.1	0.15	12.5	1.4	2.1	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
AFP	PF02420.10	gi|408406177|ref|YP_006864161.1|	-	0.13	12.4	0.4	0.13	12.4	0.3	2.4	3	0	0	3	3	2	0	Insect	antifreeze	protein	repeat
DUF1743	PF08489.6	gi|408406178|ref|YP_006864162.1|	-	1.2e-31	108.8	0.0	1.9e-31	108.2	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1743)
OrfB_Zn_ribbon	PF07282.6	gi|408406178|ref|YP_006864162.1|	-	0.044	13.4	4.1	0.1	12.2	2.8	1.5	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
C1_1	PF00130.17	gi|408406178|ref|YP_006864162.1|	-	0.089	12.5	2.3	0.2	11.4	1.6	1.5	1	0	0	1	1	1	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
HypA	PF01155.14	gi|408406178|ref|YP_006864162.1|	-	0.09	12.4	0.2	0.2	11.3	0.1	1.5	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
Zn_Tnp_IS1595	PF12760.2	gi|408406178|ref|YP_006864162.1|	-	0.45	10.3	5.1	0.29	10.9	2.0	1.8	2	0	0	2	2	2	0	Transposase	zinc-ribbon	domain
CRCB	PF02537.10	gi|408406179|ref|YP_006864163.1|	-	2.4e-23	82.2	9.3	3.1e-23	81.8	6.5	1.1	1	0	0	1	1	1	1	CrcB-like	protein
DUF190	PF02641.10	gi|408406180|ref|YP_006864164.1|	-	5.1e-18	64.7	0.1	5.9e-18	64.5	0.0	1.0	1	0	0	1	1	1	1	Uncharacterized	ACR,	COG1993
DUF3240	PF11582.3	gi|408406180|ref|YP_006864164.1|	-	0.031	14.2	0.0	0.044	13.7	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3240)
Herpes_UL14	PF03580.9	gi|408406180|ref|YP_006864164.1|	-	0.15	11.8	0.0	0.19	11.4	0.0	1.2	1	0	0	1	1	1	0	Herpesvirus	UL14-like	protein
PRA-CH	PF01502.13	gi|408406181|ref|YP_006864165.1|	-	8.8e-36	121.3	0.1	1.1e-35	121.0	0.1	1.1	1	0	0	1	1	1	1	Phosphoribosyl-AMP	cyclohydrolase
PALP	PF00291.20	gi|408406182|ref|YP_006864166.1|	-	2.1e-66	224.2	0.6	2.4e-66	224.0	0.4	1.0	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
NinF	PF05810.7	gi|408406182|ref|YP_006864166.1|	-	0.0071	16.1	0.2	0.02	14.6	0.1	1.8	1	0	0	1	1	1	1	NinF	protein
PK_C	PF02887.11	gi|408406182|ref|YP_006864166.1|	-	0.018	14.5	0.3	0.049	13.1	0.1	1.8	2	0	0	2	2	2	0	Pyruvate	kinase,	alpha/beta	domain
HypA	PF01155.14	gi|408406182|ref|YP_006864166.1|	-	0.1	12.2	0.3	0.19	11.4	0.2	1.4	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
zinc_ribbon_2	PF13240.1	gi|408406182|ref|YP_006864166.1|	-	1	8.9	4.0	1.8	8.1	2.8	1.4	1	0	0	1	1	1	0	zinc-ribbon	domain
C1_3	PF07649.7	gi|408406182|ref|YP_006864166.1|	-	1	9.4	3.3	1.9	8.5	2.3	1.4	1	0	0	1	1	1	0	C1-like	domain
ThiF	PF00899.16	gi|408406183|ref|YP_006864167.1|	-	5.6e-46	155.7	0.3	8.8e-46	155.1	0.2	1.3	1	0	0	1	1	1	1	ThiF	family
MoeZ_MoeB	PF05237.8	gi|408406183|ref|YP_006864167.1|	-	1e-20	73.0	0.1	2.1e-20	72.0	0.1	1.5	1	0	0	1	1	1	1	MoeZ/MoeB	domain
ThiS	PF02597.15	gi|408406183|ref|YP_006864167.1|	-	1.1e-09	38.5	0.0	3.1e-09	37.1	0.0	1.8	1	0	0	1	1	1	1	ThiS	family
Shikimate_DH	PF01488.15	gi|408406183|ref|YP_006864167.1|	-	8.1e-07	29.2	0.1	1.5e-06	28.3	0.1	1.4	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
TBP	PF00352.16	gi|408406183|ref|YP_006864167.1|	-	0.0012	18.1	0.0	0.0031	16.8	0.0	1.7	1	0	0	1	1	1	1	Transcription	factor	TFIID	(or	TATA-binding	protein,	TBP)
2-Hacid_dh_C	PF02826.14	gi|408406183|ref|YP_006864167.1|	-	0.01	15.0	0.0	0.017	14.2	0.0	1.3	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Saccharop_dh	PF03435.13	gi|408406183|ref|YP_006864167.1|	-	0.033	13.1	0.2	0.054	12.4	0.1	1.3	1	0	0	1	1	1	0	Saccharopine	dehydrogenase
NAD_binding_7	PF13241.1	gi|408406183|ref|YP_006864167.1|	-	0.042	14.1	0.2	0.1	12.8	0.1	1.6	1	0	0	1	1	1	0	Putative	NAD(P)-binding
PolC_DP2	PF03833.8	gi|408406184|ref|YP_006864168.1|	-	4.2e-271	901.6	3.3	2.4e-270	899.1	0.3	2.5	2	1	0	2	2	2	1	DNA	polymerase	II	large	subunit	DP2
zinc-ribbons_6	PF07191.7	gi|408406184|ref|YP_006864168.1|	-	0.17	11.7	12.7	0.39	10.5	0.2	2.6	2	1	0	2	2	2	0	zinc-ribbons
HypA	PF01155.14	gi|408406184|ref|YP_006864168.1|	-	1.2	8.8	13.3	0.65	9.7	0.5	3.8	4	0	0	4	4	4	0	Hydrogenase	expression/synthesis	hypA	family
PcrB	PF01884.12	gi|408406185|ref|YP_006864169.1|	-	2.1e-69	233.3	0.9	2.7e-69	232.9	0.6	1.0	1	0	0	1	1	1	1	PcrB	family
His_biosynth	PF00977.16	gi|408406185|ref|YP_006864169.1|	-	3.7e-10	39.4	0.4	1.1e-08	34.6	0.0	2.2	2	0	0	2	2	2	1	Histidine	biosynthesis	protein
IMPDH	PF00478.20	gi|408406185|ref|YP_006864169.1|	-	2.5e-06	26.6	0.2	3.2e-05	22.9	0.0	1.9	2	0	0	2	2	2	1	IMP	dehydrogenase	/	GMP	reductase	domain
NanE	PF04131.9	gi|408406185|ref|YP_006864169.1|	-	5.7e-05	22.1	0.6	0.0041	16.1	0.1	2.3	2	0	0	2	2	2	1	Putative	N-acetylmannosamine-6-phosphate	epimerase
ThiG	PF05690.9	gi|408406185|ref|YP_006864169.1|	-	0.00046	19.3	1.3	0.084	11.9	0.1	2.1	2	0	0	2	2	2	2	Thiazole	biosynthesis	protein	ThiG
Ribul_P_3_epim	PF00834.14	gi|408406185|ref|YP_006864169.1|	-	0.0013	17.9	0.6	0.0028	16.8	0.1	1.6	2	0	0	2	2	2	1	Ribulose-phosphate	3	epimerase	family
Trp_syntA	PF00290.15	gi|408406185|ref|YP_006864169.1|	-	0.0018	16.8	0.2	0.0018	16.8	0.1	1.9	2	1	0	2	2	2	1	Tryptophan	synthase	alpha	chain
Dus	PF01207.12	gi|408406185|ref|YP_006864169.1|	-	0.0023	16.8	0.4	1.2	7.8	0.0	2.1	2	0	0	2	2	2	2	Dihydrouridine	synthase	(Dus)
IGPS	PF00218.16	gi|408406185|ref|YP_006864169.1|	-	0.004	16.2	0.1	0.21	10.5	0.0	2.2	2	0	0	2	2	2	1	Indole-3-glycerol	phosphate	synthase
Glyco_tran_WecB	PF03808.8	gi|408406185|ref|YP_006864169.1|	-	0.0042	16.5	0.2	0.4	10.0	0.0	2.3	2	0	0	2	2	2	1	Glycosyl	transferase	WecB/TagA/CpsF	family
BtpA	PF03437.10	gi|408406185|ref|YP_006864169.1|	-	0.0077	15.5	0.7	0.21	10.7	0.1	2.2	2	0	0	2	2	2	1	BtpA	family
DHO_dh	PF01180.16	gi|408406185|ref|YP_006864169.1|	-	0.014	14.3	1.4	0.016	14.2	0.3	1.6	2	0	0	2	2	2	0	Dihydroorotate	dehydrogenase
TMP-TENI	PF02581.12	gi|408406185|ref|YP_006864169.1|	-	0.016	14.3	0.8	0.049	12.7	0.0	2.0	2	1	0	2	2	2	0	Thiamine	monophosphate	synthase/TENI
FMN_dh	PF01070.13	gi|408406185|ref|YP_006864169.1|	-	0.021	13.6	0.0	0.12	11.1	0.0	1.9	2	0	0	2	2	2	0	FMN-dependent	dehydrogenase
Aldolase	PF01081.14	gi|408406185|ref|YP_006864169.1|	-	0.038	13.1	0.6	0.22	10.6	0.0	2.2	2	0	0	2	2	2	0	KDPG	and	KHG	aldolase
Oxidored_FMN	PF00724.15	gi|408406185|ref|YP_006864169.1|	-	0.12	11.3	0.0	0.21	10.5	0.0	1.4	1	0	0	1	1	1	0	NADH:flavin	oxidoreductase	/	NADH	oxidase	family
PS_pyruv_trans	PF04230.8	gi|408406185|ref|YP_006864169.1|	-	0.12	12.0	0.0	0.26	10.9	0.0	1.5	2	0	0	2	2	2	0	Polysaccharide	pyruvyl	transferase
TrmB	PF01978.14	gi|408406187|ref|YP_006864171.1|	-	3.6e-05	23.3	0.0	7.7e-05	22.3	0.0	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_27	PF13463.1	gi|408406187|ref|YP_006864171.1|	-	4.7e-05	23.6	0.5	0.00016	21.9	0.1	2.0	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_20	PF12840.2	gi|408406187|ref|YP_006864171.1|	-	0.017	14.9	0.2	0.037	13.8	0.1	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_5	PF01022.15	gi|408406187|ref|YP_006864171.1|	-	0.022	14.4	0.0	0.048	13.3	0.0	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_24	PF13412.1	gi|408406187|ref|YP_006864171.1|	-	0.023	14.0	0.0	0.048	13.0	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
PadR	PF03551.9	gi|408406187|ref|YP_006864171.1|	-	0.044	13.5	0.0	0.12	12.1	0.0	1.8	1	1	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
HTH_34	PF13601.1	gi|408406187|ref|YP_006864171.1|	-	0.05	13.6	0.0	0.1	12.6	0.0	1.5	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_IclR	PF09339.5	gi|408406187|ref|YP_006864171.1|	-	0.057	13.0	0.3	0.11	12.0	0.2	1.5	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
DUF2360	PF10152.4	gi|408406187|ref|YP_006864171.1|	-	0.061	13.6	0.3	0.082	13.1	0.2	1.2	1	0	0	1	1	1	0	Predicted	coiled-coil	domain-containing	protein	(DUF2360)
Orthopox_A5L	PF06193.6	gi|408406187|ref|YP_006864171.1|	-	0.09	12.7	0.2	0.12	12.3	0.2	1.1	1	0	0	1	1	1	0	Orthopoxvirus	A5L	protein-like
Penicillinase_R	PF03965.11	gi|408406188|ref|YP_006864172.1|	-	0.013	15.6	0.0	0.021	14.9	0.0	1.3	1	0	0	1	1	1	0	Penicillinase	repressor